Query 003558
Match_columns 811
No_of_seqs 668 out of 4462
Neff 7.3
Searched_HMMs 46136
Date Fri Mar 29 01:43:02 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/003558.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/003558hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG0039 Ferric reductase, NADH 100.0 1.1E-73 2.3E-78 671.5 30.4 492 221-751 2-495 (646)
2 PLN02631 ferric-chelate reduct 100.0 9E-48 1.9E-52 448.9 29.3 314 368-747 110-437 (699)
3 PLN02292 ferric-chelate reduct 100.0 5.7E-46 1.2E-50 434.8 32.3 288 397-747 166-456 (702)
4 PLN02844 oxidoreductase/ferric 100.0 9.6E-45 2.1E-49 425.6 32.6 322 368-747 112-448 (722)
5 COG4097 Predicted ferric reduc 100.0 1E-33 2.2E-38 297.7 29.0 326 410-798 50-394 (438)
6 cd06189 flavin_oxioreductase N 99.9 3.3E-21 7.2E-26 200.8 18.3 169 603-799 1-185 (224)
7 PRK08051 fre FMN reductase; Va 99.9 5E-21 1.1E-25 200.7 19.3 172 601-800 3-190 (232)
8 cd06186 NOX_Duox_like_FAD_NADP 99.9 4E-21 8.6E-26 198.0 14.6 127 606-748 2-132 (210)
9 cd06210 MMO_FAD_NAD_binding Me 99.9 2.3E-20 4.9E-25 195.9 19.2 173 601-800 2-196 (236)
10 cd06217 FNR_iron_sulfur_bindin 99.8 5.5E-20 1.2E-24 192.7 19.8 175 600-799 1-195 (235)
11 cd06212 monooxygenase_like The 99.8 5.7E-20 1.2E-24 192.5 19.5 173 602-801 2-194 (232)
12 cd06209 BenDO_FAD_NAD Benzoate 99.8 8E-20 1.7E-24 190.9 20.2 169 602-799 3-188 (228)
13 cd06216 FNR_iron_sulfur_bindin 99.8 7.3E-20 1.6E-24 193.1 19.8 180 589-798 2-203 (243)
14 cd06191 FNR_iron_sulfur_bindin 99.8 8.5E-20 1.9E-24 191.0 20.0 171 604-799 2-191 (231)
15 PRK07609 CDP-6-deoxy-delta-3,4 99.8 3.8E-20 8.2E-25 204.9 18.1 173 600-800 102-294 (339)
16 cd06211 phenol_2-monooxygenase 99.8 6.7E-20 1.5E-24 192.8 18.9 172 601-799 7-198 (238)
17 cd06190 T4MO_e_transfer_like T 99.8 5.7E-20 1.2E-24 192.4 18.2 172 606-801 2-192 (232)
18 cd06187 O2ase_reductase_like T 99.8 5.6E-20 1.2E-24 191.3 17.8 169 605-799 1-185 (224)
19 cd06215 FNR_iron_sulfur_bindin 99.8 1.1E-19 2.4E-24 189.9 19.2 173 603-799 1-191 (231)
20 cd06195 FNR1 Ferredoxin-NADP+ 99.8 8.3E-20 1.8E-24 192.4 18.2 166 604-796 1-185 (241)
21 cd06184 flavohem_like_fad_nad_ 99.8 1.8E-19 3.9E-24 190.5 20.5 176 600-797 6-202 (247)
22 cd06213 oxygenase_e_transfer_s 99.8 1.7E-19 3.8E-24 188.2 18.8 170 602-799 2-190 (227)
23 cd06188 NADH_quinone_reductase 99.8 1.1E-19 2.5E-24 196.1 17.9 172 601-799 10-240 (283)
24 cd06214 PA_degradation_oxidore 99.8 5.3E-19 1.1E-23 186.1 20.8 172 601-797 2-194 (241)
25 PRK11872 antC anthranilate dio 99.8 2.6E-19 5.5E-24 198.2 19.0 171 600-798 106-295 (340)
26 cd06221 sulfite_reductase_like 99.8 3.9E-19 8.4E-24 188.8 18.0 165 605-799 1-185 (253)
27 PRK08221 anaerobic sulfite red 99.8 6.6E-19 1.4E-23 188.0 19.3 165 601-798 8-185 (263)
28 cd06196 FNR_like_1 Ferredoxin 99.8 6.6E-19 1.4E-23 182.6 18.7 120 602-748 2-125 (218)
29 cd00322 FNR_like Ferredoxin re 99.8 6.7E-19 1.5E-23 182.5 18.8 160 607-792 2-177 (223)
30 PRK10684 HCP oxidoreductase, N 99.8 7.1E-19 1.5E-23 194.1 20.0 171 601-798 10-196 (332)
31 PRK00054 dihydroorotate dehydr 99.8 7.1E-19 1.5E-23 186.5 18.6 165 600-798 4-177 (250)
32 cd06197 FNR_like_2 FAD/NAD(P) 99.8 3.4E-19 7.4E-24 185.2 15.3 167 607-796 2-207 (220)
33 cd06183 cyt_b5_reduct_like Cyt 99.8 1.5E-18 3.2E-23 181.6 19.3 170 604-799 2-193 (234)
34 PRK10926 ferredoxin-NADP reduc 99.8 1.7E-18 3.6E-23 183.4 19.4 168 600-795 4-189 (248)
35 TIGR02160 PA_CoA_Oxy5 phenylac 99.8 1.5E-18 3.3E-23 193.1 20.0 169 601-794 2-192 (352)
36 cd06198 FNR_like_3 NAD(P) bind 99.8 1E-18 2.2E-23 181.0 16.6 113 613-748 7-121 (216)
37 COG5126 FRQ1 Ca2+-binding prot 99.8 5.4E-19 1.2E-23 170.8 13.1 142 164-318 14-159 (160)
38 PRK08345 cytochrome-c3 hydroge 99.8 2.4E-18 5.2E-23 186.2 19.6 123 600-748 5-134 (289)
39 cd06194 FNR_N-term_Iron_sulfur 99.8 1.3E-18 2.8E-23 180.9 16.5 119 605-748 1-123 (222)
40 cd06192 DHOD_e_trans_like FAD/ 99.8 2.3E-18 5E-23 181.7 18.0 120 605-747 1-122 (243)
41 PRK13289 bifunctional nitric o 99.8 3.3E-18 7.1E-23 193.7 20.4 176 598-797 152-351 (399)
42 cd06219 DHOD_e_trans_like1 FAD 99.8 2.6E-18 5.6E-23 182.0 18.3 161 604-800 2-175 (248)
43 PLN03116 ferredoxin--NADP+ red 99.8 2.7E-18 5.9E-23 187.3 18.8 171 601-797 25-247 (307)
44 cd06218 DHOD_e_trans FAD/NAD b 99.8 2.4E-18 5.2E-23 182.0 17.6 164 605-800 1-176 (246)
45 PRK06222 ferredoxin-NADP(+) re 99.8 2.5E-18 5.5E-23 185.3 17.9 163 603-800 2-176 (281)
46 PTZ00274 cytochrome b5 reducta 99.8 6E-18 1.3E-22 185.0 20.6 175 597-797 49-253 (325)
47 TIGR02911 sulfite_red_B sulfit 99.8 4.1E-18 8.8E-23 181.7 18.8 163 602-798 7-183 (261)
48 PF08022 FAD_binding_8: FAD-bi 99.8 9.7E-21 2.1E-25 173.6 -1.9 100 601-715 2-104 (105)
49 COG1018 Hmp Flavodoxin reducta 99.8 8.9E-18 1.9E-22 178.4 19.4 129 599-749 4-137 (266)
50 PTZ00319 NADH-cytochrome B5 re 99.8 7.1E-18 1.5E-22 183.3 18.6 175 598-799 31-254 (300)
51 cd06208 CYPOR_like_FNR These f 99.8 9.3E-18 2E-22 181.4 18.7 171 601-797 9-226 (286)
52 cd06220 DHOD_e_trans_like2 FAD 99.8 7.3E-18 1.6E-22 176.8 17.1 154 603-799 1-163 (233)
53 PRK05802 hypothetical protein; 99.8 1.2E-17 2.6E-22 182.7 18.3 125 601-748 65-198 (320)
54 PRK05464 Na(+)-translocating N 99.8 1.2E-17 2.5E-22 189.5 18.4 171 601-798 134-363 (409)
55 KOG0034 Ca2+/calmodulin-depend 99.7 8.3E-18 1.8E-22 168.1 13.0 150 165-320 28-180 (187)
56 PLN03115 ferredoxin--NADP(+) r 99.7 4.1E-17 8.8E-22 180.6 18.9 170 602-797 92-306 (367)
57 COG0543 UbiB 2-polyprenylpheno 99.7 5.3E-17 1.1E-21 172.1 18.8 164 602-800 9-188 (252)
58 TIGR01941 nqrF NADH:ubiquinone 99.7 2.7E-17 5.9E-22 186.2 16.8 171 601-798 130-359 (405)
59 KOG0027 Calmodulin and related 99.7 5E-17 1.1E-21 159.1 13.9 139 166-316 4-150 (151)
60 PRK05713 hypothetical protein; 99.7 6.1E-17 1.3E-21 177.2 16.1 171 601-797 92-292 (312)
61 cd06200 SiR_like1 Cytochrome p 99.7 2.7E-16 5.8E-21 166.3 18.5 109 614-747 17-134 (245)
62 PLN02252 nitrate reductase [NA 99.7 1.9E-16 4.2E-21 192.4 19.7 176 598-799 632-848 (888)
63 KOG0534 NADH-cytochrome b-5 re 99.7 4.9E-16 1.1E-20 164.3 17.9 180 599-804 50-251 (286)
64 cd06182 CYPOR_like NADPH cytoc 99.7 5.4E-16 1.2E-20 165.9 17.4 110 612-746 14-139 (267)
65 PF08414 NADPH_Ox: Respiratory 99.7 6.6E-17 1.4E-21 141.0 7.7 99 142-243 1-100 (100)
66 TIGR03224 benzo_boxA benzoyl-C 99.7 9.1E-16 2E-20 173.5 18.9 167 601-797 143-350 (411)
67 cd06185 PDR_like Phthalate dio 99.7 9.6E-16 2.1E-20 158.0 16.6 115 607-747 2-123 (211)
68 PRK12778 putative bifunctional 99.7 9.8E-16 2.1E-20 186.6 18.5 163 603-800 2-176 (752)
69 cd06201 SiR_like2 Cytochrome p 99.6 5E-15 1.1E-19 160.3 19.4 144 599-768 44-211 (289)
70 PRK12779 putative bifunctional 99.6 8.7E-15 1.9E-19 180.2 20.3 173 599-801 647-838 (944)
71 PTZ00183 centrin; Provisional 99.6 5.2E-15 1.1E-19 144.9 13.8 144 163-318 10-157 (158)
72 PRK12775 putative trifunctiona 99.6 1.5E-14 3.3E-19 179.5 18.7 165 603-801 2-178 (1006)
73 KOG0044 Ca2+ sensor (EF-Hand s 99.6 4.7E-15 1E-19 148.4 11.4 148 167-320 26-180 (193)
74 PTZ00184 calmodulin; Provision 99.6 1.7E-14 3.8E-19 139.4 13.3 139 164-314 5-147 (149)
75 PTZ00306 NADH-dependent fumara 99.6 5.2E-14 1.1E-18 177.9 20.0 175 599-799 913-1122(1167)
76 KOG0028 Ca2+-binding protein ( 99.5 5.8E-14 1.3E-18 132.9 12.5 140 165-316 28-171 (172)
77 cd06193 siderophore_interactin 99.5 4.8E-14 1E-18 148.1 13.2 119 605-747 1-145 (235)
78 COG5126 FRQ1 Ca2+-binding prot 99.4 1.8E-12 4E-17 125.7 11.7 127 139-270 25-155 (160)
79 KOG0038 Ca2+-binding kinase in 99.4 2.8E-12 6.1E-17 119.0 12.2 146 167-320 25-182 (189)
80 PF01794 Ferric_reduct: Ferric 99.4 9.1E-13 2E-17 124.1 8.8 118 409-558 6-124 (125)
81 KOG0031 Myosin regulatory ligh 99.4 8.2E-12 1.8E-16 117.5 12.6 134 166-315 28-165 (171)
82 KOG0027 Calmodulin and related 99.3 1.2E-11 2.7E-16 121.0 11.7 129 139-270 13-148 (151)
83 KOG0377 Protein serine/threoni 99.3 1.1E-11 2.3E-16 133.3 11.7 163 138-317 439-617 (631)
84 PF00970 FAD_binding_6: Oxidor 99.2 3.8E-11 8.2E-16 108.6 8.7 91 603-716 2-98 (99)
85 COG2871 NqrF Na+-transporting 99.2 1.1E-10 2.5E-15 119.9 10.9 165 615-797 149-363 (410)
86 KOG0028 Ca2+-binding protein ( 99.2 7.1E-11 1.5E-15 112.1 8.2 129 138-270 37-169 (172)
87 KOG0030 Myosin essential light 99.2 2.6E-10 5.7E-15 105.8 11.5 137 167-314 8-150 (152)
88 KOG0037 Ca2+-binding protein, 99.2 4.6E-10 9.9E-15 112.3 13.8 131 170-317 57-190 (221)
89 PTZ00183 centrin; Provisional 99.1 3.6E-10 7.9E-15 110.5 11.7 127 140-270 23-153 (158)
90 PRK06567 putative bifunctional 99.1 4.4E-10 9.6E-15 135.7 14.3 118 602-746 792-914 (1028)
91 PF13499 EF-hand_7: EF-hand do 99.1 2.5E-10 5.5E-15 95.2 8.3 66 244-313 1-66 (66)
92 cd06199 SiR Cytochrome p450- l 99.1 1.9E-10 4.2E-15 128.4 9.7 97 625-747 129-238 (360)
93 KOG0036 Predicted mitochondria 99.1 4.7E-10 1E-14 120.9 12.1 132 170-318 14-149 (463)
94 TIGR01931 cysJ sulfite reducta 99.1 2.6E-10 5.6E-15 135.1 9.6 139 626-797 367-532 (597)
95 KOG0037 Ca2+-binding protein, 99.0 9.2E-10 2E-14 110.2 10.7 154 140-314 63-219 (221)
96 PTZ00184 calmodulin; Provision 99.0 1.3E-09 2.7E-14 105.3 11.0 127 140-270 17-147 (149)
97 cd06203 methionine_synthase_re 99.0 2.9E-09 6.4E-14 120.5 13.9 133 643-797 171-332 (398)
98 cd06207 CyPoR_like NADPH cytoc 99.0 3.2E-09 6.9E-14 119.7 12.9 81 643-746 161-254 (382)
99 KOG4223 Reticulocalbin, calume 99.0 2.3E-09 4.9E-14 113.1 9.5 160 141-309 120-299 (325)
100 cd06206 bifunctional_CYPOR The 98.9 2.5E-09 5.4E-14 120.6 10.2 92 628-746 147-254 (384)
101 PLN02964 phosphatidylserine de 98.9 6E-09 1.3E-13 122.0 10.2 100 167-271 140-243 (644)
102 PRK06214 sulfite reductase; Pr 98.8 2.8E-08 6.2E-13 115.2 12.2 81 643-746 313-407 (530)
103 PRK10953 cysJ sulfite reductas 98.8 1.5E-08 3.2E-13 119.8 10.0 96 626-747 370-478 (600)
104 KOG3378 Globins and related he 98.8 2.8E-08 6.2E-13 101.8 10.3 133 598-751 147-291 (385)
105 KOG4223 Reticulocalbin, calume 98.7 4.6E-08 9.9E-13 103.4 10.3 147 160-318 67-231 (325)
106 cd05022 S-100A13 S-100A13: S-1 98.7 2.6E-08 5.7E-13 88.2 6.9 68 243-316 8-76 (89)
107 cd06204 CYPOR NADPH cytochrome 98.7 1.2E-07 2.6E-12 108.0 13.0 100 643-745 175-288 (416)
108 cd06202 Nitric_oxide_synthase 98.7 2E-07 4.3E-12 105.9 13.5 125 644-797 175-337 (406)
109 cd05026 S-100Z S-100Z: S-100Z 98.6 1.1E-07 2.3E-12 85.3 7.7 70 243-315 10-81 (93)
110 KOG0036 Predicted mitochondria 98.6 1E-07 2.2E-12 103.1 8.0 164 139-317 19-185 (463)
111 KOG0044 Ca2+ sensor (EF-Hand s 98.6 2.1E-07 4.6E-12 93.7 9.7 106 202-317 24-130 (193)
112 cd05027 S-100B S-100B: S-100B 98.6 1.1E-07 2.3E-12 84.3 6.7 67 243-315 8-79 (88)
113 KOG0034 Ca2+/calmodulin-depend 98.6 1.1E-07 2.5E-12 95.5 7.4 137 121-270 25-174 (187)
114 PF13499 EF-hand_7: EF-hand do 98.5 3.4E-07 7.3E-12 76.3 6.8 61 206-269 2-66 (66)
115 cd05025 S-100A1 S-100A1: S-100 98.5 4.8E-07 1E-11 80.9 7.8 71 242-315 8-80 (92)
116 cd05031 S-100A10_like S-100A10 98.4 4.4E-07 9.5E-12 81.5 6.7 71 242-316 7-80 (94)
117 cd00252 SPARC_EC SPARC_EC; ext 98.4 5.9E-07 1.3E-11 83.6 6.9 66 241-319 46-111 (116)
118 cd05023 S-100A11 S-100A11: S-1 98.4 1.1E-06 2.4E-11 78.0 7.9 70 243-315 9-80 (89)
119 smart00027 EH Eps15 homology d 98.4 1.5E-06 3.2E-11 78.4 8.4 65 242-316 9-73 (96)
120 PLN02964 phosphatidylserine de 98.3 1.6E-06 3.5E-11 101.9 10.7 99 204-317 143-245 (644)
121 KOG2562 Protein phosphatase 2 98.3 1E-06 2.2E-11 96.9 8.0 138 170-311 278-420 (493)
122 cd00052 EH Eps15 homology doma 98.3 1.2E-06 2.6E-11 72.8 6.5 61 246-316 2-62 (67)
123 cd00213 S-100 S-100: S-100 dom 98.3 1.7E-06 3.8E-11 76.5 7.7 72 242-316 7-80 (88)
124 cd05029 S-100A6 S-100A6: S-100 98.3 8.7E-07 1.9E-11 78.5 5.7 66 244-315 11-79 (88)
125 KOG0031 Myosin regulatory ligh 98.3 4.3E-06 9.2E-11 79.5 9.9 139 115-270 21-164 (171)
126 KOG4666 Predicted phosphate ac 98.3 2E-06 4.4E-11 90.3 7.7 141 166-320 219-364 (412)
127 PF13833 EF-hand_8: EF-hand do 98.2 5.4E-06 1.2E-10 66.2 6.5 50 221-270 2-52 (54)
128 KOG2643 Ca2+ binding protein, 98.2 1.1E-05 2.5E-10 88.1 10.9 158 143-314 208-383 (489)
129 PF00175 NAD_binding_1: Oxidor 98.1 3.9E-06 8.4E-11 76.8 6.2 72 727-801 1-85 (109)
130 KOG4251 Calcium binding protei 98.1 5.2E-06 1.1E-10 84.0 6.7 186 120-314 96-308 (362)
131 cd00051 EFh EF-hand, calcium b 98.1 4.4E-06 9.6E-11 67.0 5.1 61 245-313 2-62 (63)
132 PF13833 EF-hand_8: EF-hand do 98.1 1E-05 2.3E-10 64.5 6.8 53 256-315 1-53 (54)
133 cd05022 S-100A13 S-100A13: S-1 98.0 1.2E-05 2.6E-10 71.3 7.0 63 205-270 9-74 (89)
134 PF00036 EF-hand_1: EF hand; 98.0 5.6E-06 1.2E-10 57.4 3.8 27 244-270 1-27 (29)
135 cd05026 S-100Z S-100Z: S-100Z 98.0 2E-05 4.3E-10 70.6 8.0 64 205-270 11-80 (93)
136 cd05027 S-100B S-100B: S-100B 98.0 2.2E-05 4.8E-10 69.6 7.7 64 205-270 9-78 (88)
137 smart00027 EH Eps15 homology d 97.9 1.9E-05 4E-10 71.2 5.5 60 206-270 12-71 (96)
138 cd05030 calgranulins Calgranul 97.9 4.1E-05 8.8E-10 67.9 7.4 70 244-316 9-80 (88)
139 KOG0751 Mitochondrial aspartat 97.9 8.4E-05 1.8E-09 82.2 11.3 147 168-319 34-211 (694)
140 PRK05419 putative sulfite oxid 97.9 0.00016 3.5E-09 74.2 12.8 126 438-596 69-194 (205)
141 PF14658 EF-hand_9: EF-hand do 97.9 2.7E-05 5.8E-10 64.4 5.6 62 247-315 2-64 (66)
142 cd05025 S-100A1 S-100A1: S-100 97.9 5.1E-05 1.1E-09 67.8 7.8 65 204-270 9-79 (92)
143 cd00051 EFh EF-hand, calcium b 97.8 6.6E-05 1.4E-09 60.0 7.3 61 206-269 2-62 (63)
144 KOG2643 Ca2+ binding protein, 97.8 3.9E-05 8.5E-10 84.1 7.5 155 143-316 295-454 (489)
145 KOG0377 Protein serine/threoni 97.8 5.1E-05 1.1E-09 82.8 8.1 129 138-272 468-616 (631)
146 KOG0030 Myosin essential light 97.8 0.00018 4E-09 67.5 9.9 111 202-320 9-121 (152)
147 cd05031 S-100A10_like S-100A10 97.8 9.7E-05 2.1E-09 66.3 7.9 65 205-270 9-78 (94)
148 cd05023 S-100A11 S-100A11: S-1 97.7 0.00013 2.8E-09 64.8 8.0 63 206-270 11-79 (89)
149 KOG0041 Predicted Ca2+-binding 97.7 8.2E-05 1.8E-09 73.7 7.2 67 243-317 99-165 (244)
150 PF08030 NAD_binding_6: Ferric 97.7 4.3E-05 9.3E-10 74.8 5.3 28 722-749 1-28 (156)
151 cd00052 EH Eps15 homology doma 97.7 0.0001 2.2E-09 61.1 6.6 59 207-270 2-60 (67)
152 cd05029 S-100A6 S-100A6: S-100 97.7 8.1E-05 1.7E-09 66.0 6.0 63 207-270 13-78 (88)
153 PF00036 EF-hand_1: EF hand; 97.6 5.9E-05 1.3E-09 52.3 3.4 27 289-315 2-28 (29)
154 PF13405 EF-hand_6: EF-hand do 97.6 7.9E-05 1.7E-09 52.4 3.6 27 244-270 1-27 (31)
155 PRK12309 transaldolase/EF-hand 97.6 0.00021 4.6E-09 80.2 8.6 56 239-315 330-385 (391)
156 KOG4251 Calcium binding protei 97.5 7.2E-05 1.6E-09 75.9 4.3 135 170-314 101-263 (362)
157 PF13202 EF-hand_5: EF hand; P 97.5 0.0001 2.2E-09 49.3 3.4 25 245-269 1-25 (25)
158 cd00252 SPARC_EC SPARC_EC; ext 97.5 0.00029 6.3E-09 65.7 7.2 45 221-269 62-106 (116)
159 cd00213 S-100 S-100: S-100 dom 97.4 0.00039 8.5E-09 61.4 7.2 63 205-270 9-78 (88)
160 cd05030 calgranulins Calgranul 97.3 0.00063 1.4E-08 60.3 7.1 64 206-270 10-78 (88)
161 cd05024 S-100A10 S-100A10: A s 97.3 0.00058 1.3E-08 60.5 6.2 67 245-315 10-76 (91)
162 COG2717 Predicted membrane pro 97.2 0.0028 6.2E-08 64.4 11.4 123 441-596 72-194 (209)
163 COG0369 CysJ Sulfite reductase 97.2 0.002 4.3E-08 76.0 11.9 91 645-749 372-467 (587)
164 KOG0040 Ca2+-binding actin-bun 97.2 0.0013 2.8E-08 80.8 10.3 134 165-313 2248-2396(2399)
165 KOG4065 Uncharacterized conser 97.1 0.0015 3.3E-08 59.2 7.1 71 241-312 65-142 (144)
166 PRK12309 transaldolase/EF-hand 96.9 0.0013 2.9E-08 73.9 5.7 86 168-270 297-384 (391)
167 KOG1158 NADP/FAD dependent oxi 96.9 0.0029 6.4E-08 74.7 8.6 28 720-747 489-516 (645)
168 PF13202 EF-hand_5: EF hand; P 96.8 0.0015 3.2E-08 43.7 3.1 23 291-313 3-25 (25)
169 KOG0038 Ca2+-binding kinase in 96.7 0.0024 5.1E-08 60.4 5.3 89 178-270 79-176 (189)
170 PF14788 EF-hand_10: EF hand; 96.7 0.0044 9.6E-08 48.5 5.7 48 223-270 1-48 (51)
171 PF12763 EF-hand_4: Cytoskelet 96.7 0.0045 9.8E-08 56.6 6.5 90 240-342 7-96 (104)
172 KOG0751 Mitochondrial aspartat 96.6 0.006 1.3E-07 68.0 8.4 115 143-270 83-206 (694)
173 KOG0041 Predicted Ca2+-binding 96.3 0.017 3.7E-07 57.6 8.8 99 206-311 101-199 (244)
174 PF14658 EF-hand_9: EF-hand do 96.3 0.013 2.7E-07 48.7 6.6 59 209-270 3-63 (66)
175 PF12763 EF-hand_4: Cytoskelet 96.1 0.015 3.1E-07 53.3 6.4 48 221-270 23-70 (104)
176 PF10591 SPARC_Ca_bdg: Secrete 96.0 0.0085 1.8E-07 55.7 4.7 67 235-311 46-112 (113)
177 KOG2562 Protein phosphatase 2 95.9 0.025 5.4E-07 63.2 8.4 163 138-316 143-344 (493)
178 PF13405 EF-hand_6: EF-hand do 95.9 0.0093 2E-07 41.8 3.3 26 290-315 3-28 (31)
179 cd05024 S-100A10 S-100A10: A s 95.8 0.02 4.3E-07 50.9 5.9 63 169-236 7-77 (91)
180 PF14788 EF-hand_10: EF hand; 95.7 0.03 6.4E-07 44.0 5.8 49 259-315 1-49 (51)
181 KOG0046 Ca2+-binding actin-bun 95.7 0.024 5.2E-07 64.0 7.3 67 244-316 20-86 (627)
182 KOG1159 NADP-dependent flavopr 95.7 0.021 4.6E-07 64.1 6.7 92 637-747 362-457 (574)
183 COG2375 ViuB Siderophore-inter 95.4 0.23 4.9E-06 52.8 13.0 126 600-749 17-170 (265)
184 smart00054 EFh EF-hand, calciu 95.1 0.023 5E-07 37.4 3.0 26 245-270 2-27 (29)
185 KOG3866 DNA-binding protein of 94.8 0.05 1.1E-06 57.6 5.8 88 225-312 225-321 (442)
186 KOG0169 Phosphoinositide-speci 94.3 0.53 1.1E-05 56.1 13.3 162 143-318 104-277 (746)
187 PF08021 FAD_binding_9: Sidero 94.1 0.25 5.4E-06 46.3 8.4 89 604-715 1-117 (117)
188 PF10591 SPARC_Ca_bdg: Secrete 93.9 0.15 3.3E-06 47.4 6.5 32 166-197 50-81 (113)
189 smart00054 EFh EF-hand, calciu 93.9 0.073 1.6E-06 34.9 3.3 26 290-315 3-28 (29)
190 KOG0039 Ferric reductase, NADH 92.8 1.4 3E-05 53.4 14.0 79 184-270 2-88 (646)
191 KOG0040 Ca2+-binding actin-bun 92.8 0.36 7.8E-06 60.6 8.8 95 207-311 2256-2357(2399)
192 PF09279 EF-hand_like: Phospho 91.3 0.75 1.6E-05 39.9 7.0 69 244-319 1-73 (83)
193 KOG0046 Ca2+-binding actin-bun 91.2 0.36 7.9E-06 54.9 5.9 74 160-237 9-87 (627)
194 KOG1707 Predicted Ras related/ 89.1 1.5 3.2E-05 51.2 8.6 149 168-319 193-347 (625)
195 PLN02952 phosphoinositide phos 88.6 2.7 5.8E-05 50.0 10.7 93 221-316 14-111 (599)
196 KOG4666 Predicted phosphate ac 88.5 0.88 1.9E-05 49.0 5.9 96 170-270 259-358 (412)
197 KOG4065 Uncharacterized conser 88.2 0.64 1.4E-05 42.6 4.0 58 174-232 71-142 (144)
198 KOG1029 Endocytic adaptor prot 85.4 3.1 6.7E-05 49.5 8.6 62 242-313 194-255 (1118)
199 KOG3555 Ca2+-binding proteogly 84.3 0.99 2.2E-05 48.9 3.7 64 242-317 249-312 (434)
200 KOG4578 Uncharacterized conser 83.8 0.86 1.9E-05 49.0 3.0 69 244-319 334-402 (421)
201 KOG4347 GTPase-activating prot 83.3 2.9 6.3E-05 49.1 7.2 60 202-265 553-612 (671)
202 PF09279 EF-hand_like: Phospho 83.3 2.7 5.8E-05 36.4 5.5 61 206-270 2-68 (83)
203 PF08726 EFhand_Ca_insen: Ca2+ 78.3 0.81 1.8E-05 38.6 0.5 30 240-270 3-32 (69)
204 KOG0035 Ca2+-binding actin-bun 78.2 4.4 9.4E-05 49.8 6.7 101 166-267 743-848 (890)
205 KOG0169 Phosphoinositide-speci 75.3 11 0.00025 45.3 8.8 98 204-316 136-233 (746)
206 PF09069 EF-hand_3: EF-hand; 74.4 19 0.00041 32.1 8.0 72 242-320 2-80 (90)
207 PF05042 Caleosin: Caleosin re 74.1 20 0.00043 35.8 8.8 69 242-313 95-164 (174)
208 KOG0998 Synaptic vesicle prote 72.1 2.5 5.3E-05 52.7 2.6 66 243-318 283-348 (847)
209 KOG4578 Uncharacterized conser 69.1 4.8 0.0001 43.6 3.6 52 219-270 345-397 (421)
210 KOG1264 Phospholipase C [Lipid 65.1 34 0.00074 41.5 9.7 165 145-316 114-294 (1267)
211 KOG0035 Ca2+-binding actin-bun 63.0 14 0.0003 45.6 6.3 76 242-320 746-821 (890)
212 PF05517 p25-alpha: p25-alpha 61.8 64 0.0014 31.7 9.7 64 207-270 2-68 (154)
213 KOG3555 Ca2+-binding proteogly 60.2 11 0.00024 41.1 4.3 59 170-233 250-308 (434)
214 PLN02631 ferric-chelate reduct 57.8 18 0.00039 44.2 6.1 60 496-564 147-209 (699)
215 PF05042 Caleosin: Caleosin re 54.0 32 0.0007 34.3 6.1 30 287-316 96-125 (174)
216 KOG0042 Glycerol-3-phosphate d 53.3 12 0.00025 43.7 3.3 66 244-317 594-659 (680)
217 PLN02292 ferric-chelate reduct 52.4 32 0.0007 42.1 7.0 59 497-564 165-226 (702)
218 KOG4347 GTPase-activating prot 48.0 20 0.00044 42.4 4.2 77 224-309 535-612 (671)
219 KOG1029 Endocytic adaptor prot 47.1 16 0.00034 43.9 3.1 63 170-235 195-257 (1118)
220 KOG2243 Ca2+ release channel ( 46.5 26 0.00056 44.4 4.8 60 248-316 4062-4121(5019)
221 PLN02844 oxidoreductase/ferric 44.6 66 0.0014 39.6 8.1 58 498-564 152-212 (722)
222 KOG1707 Predicted Ras related/ 43.4 19 0.00041 42.3 3.1 89 166-257 311-400 (625)
223 PF00033 Cytochrom_B_N: Cytoch 42.7 67 0.0014 31.7 6.7 27 440-466 44-70 (188)
224 PF09068 EF-hand_2: EF hand; 41.8 3.1E+02 0.0068 26.0 10.8 103 207-314 3-124 (127)
225 KOG1955 Ral-GTPase effector RA 41.8 15 0.00033 41.9 1.9 66 167-236 228-294 (737)
226 KOG1955 Ral-GTPase effector RA 41.2 41 0.00089 38.6 5.1 63 243-315 231-293 (737)
227 KOG1265 Phospholipase C [Lipid 39.2 1.5E+02 0.0032 36.9 9.4 128 181-315 159-299 (1189)
228 PF08726 EFhand_Ca_insen: Ca2+ 39.2 13 0.00029 31.4 0.7 60 169-231 5-65 (69)
229 PF01794 Ferric_reduct: Ferric 37.8 65 0.0014 29.5 5.3 51 506-565 2-55 (125)
230 KOG0042 Glycerol-3-phosphate d 37.6 19 0.00041 42.1 1.8 50 221-270 607-656 (680)
231 KOG4403 Cell surface glycoprot 37.3 1.6E+02 0.0035 33.4 8.7 50 221-274 82-132 (575)
232 PF04876 Tenui_NCP: Tenuivirus 37.1 1.2E+02 0.0025 29.6 6.6 36 282-320 130-165 (175)
233 KOG2243 Ca2+ release channel ( 36.1 29 0.00063 44.0 3.1 57 175-234 4062-4119(5019)
234 PF05517 p25-alpha: p25-alpha 36.0 97 0.0021 30.4 6.4 60 173-236 2-70 (154)
235 PF01292 Ni_hydr_CYTB: Prokary 36.0 2.8E+02 0.006 27.2 9.9 22 443-464 43-64 (182)
236 PF09842 DUF2069: Predicted me 35.9 3.2E+02 0.0069 25.2 9.3 52 444-527 54-105 (109)
237 COG4097 Predicted ferric reduc 34.1 79 0.0017 35.5 5.8 64 494-565 33-97 (438)
238 PLN02952 phosphoinositide phos 33.7 95 0.0021 37.3 6.9 84 183-270 13-109 (599)
239 PF14358 DUF4405: Domain of un 32.0 46 0.00099 27.3 2.9 25 440-464 39-63 (64)
240 PF08414 NADPH_Ox: Respiratory 30.7 1.1E+02 0.0024 27.7 5.2 67 243-319 30-96 (100)
241 TIGR01848 PHA_reg_PhaR polyhyd 29.8 1.4E+02 0.003 27.5 5.6 69 250-320 10-82 (107)
242 PRK10639 formate dehydrogenase 29.4 2E+02 0.0042 29.7 7.7 23 541-563 146-169 (211)
243 cd06395 PB1_Map2k5 PB1 domain 27.9 78 0.0017 27.5 3.5 44 222-270 21-67 (91)
244 KOG3866 DNA-binding protein of 27.8 40 0.00087 36.4 2.2 22 175-196 249-270 (442)
245 cd02977 ArsC_family Arsenate R 27.8 1E+02 0.0023 27.7 4.8 64 249-322 26-92 (105)
246 PF13706 PepSY_TM_3: PepSY-ass 27.4 64 0.0014 23.6 2.6 17 442-458 4-20 (37)
247 PF00404 Dockerin_1: Dockerin 26.4 51 0.0011 21.2 1.7 16 253-268 1-16 (21)
248 KOG4004 Matricellular protein 25.5 38 0.00082 34.4 1.5 29 172-200 224-252 (259)
249 PF14145 YrhK: YrhK-like prote 25.4 1.2E+02 0.0027 24.7 4.2 36 561-597 21-56 (59)
250 PF09068 EF-hand_2: EF hand; 25.4 2.3E+02 0.005 26.9 6.7 104 142-270 11-124 (127)
251 MTH00156 CYTB cytochrome b; Pr 25.3 1E+03 0.022 26.8 12.9 30 498-527 271-300 (356)
252 MTH00074 CYTB cytochrome b; Pr 25.2 7.9E+02 0.017 27.9 12.1 19 442-460 179-197 (380)
253 PF03929 PepSY_TM: PepSY-assoc 24.0 1.1E+02 0.0024 21.0 3.0 20 443-462 2-21 (27)
254 PRK13553 fumarate reductase cy 23.5 1.3E+02 0.0027 32.2 5.0 108 444-565 26-145 (258)
255 PF05297 Herpes_LMP1: Herpesvi 22.4 29 0.00063 37.1 0.0 14 576-589 171-184 (381)
256 KOG4489 Uncharacterized conser 21.8 1.2E+02 0.0025 26.0 3.4 24 531-559 13-36 (87)
257 PRK11513 cytochrome b561; Prov 21.7 8.1E+02 0.018 24.4 10.3 24 442-465 41-64 (176)
258 MTH00053 CYTB cytochrome b; Pr 21.4 6.4E+02 0.014 28.7 10.4 20 441-460 178-197 (381)
259 PF13301 DUF4079: Protein of u 20.5 5.1E+02 0.011 26.1 8.4 48 503-563 118-166 (175)
260 PF13172 PepSY_TM_1: PepSY-ass 20.4 1.4E+02 0.0029 21.4 3.1 22 442-463 5-26 (34)
No 1
>KOG0039 consensus Ferric reductase, NADH/NADPH oxidase and related proteins [Inorganic ion transport and metabolism; Secondary metabolites biosynthesis, transport and catabolism]
Probab=100.00 E-value=1.1e-73 Score=671.48 Aligned_cols=492 Identities=52% Similarity=0.905 Sum_probs=433.4
Q ss_pred CCceeHHHHHHHHHHhccCChHHHHHHHhhhhcCCCCCceeHHHHHHHHHhhhccCCCcchHHHHHHHHHHHHHHcCCCC
Q 003558 221 GDTITKDQLREFWDQISDQSFDSRLQTFFDMVDKDADGRITEDEVREIISLSASANKLSNIQKQAEEYAALIMEELDPDH 300 (811)
Q Consensus 221 ~G~I~~~EF~~~~~~l~~~~~~e~l~~~F~~fDkD~dG~It~eE~~~il~~~~~~~~l~~~~~~~~e~~~~i~~e~D~d~ 300 (811)
+| |+++||. +.+.+.|++++.+|+++|+ +||.++.+|+.++++.+...+....++++..++.+.++++.|.++
T Consensus 2 ~~-~~~~~~~-----~~~~~~d~~l~~~f~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 74 (646)
T KOG0039|consen 2 EG-ISFQELK-----ITDCSYDDKLQTFFDMYDK-GDGKLTEEEVRELIMSSISANWLSLIKKQTEEYAALIMEELDPDH 74 (646)
T ss_pred CC-cchhhhc-----ccCCChhHHHHHHHHHHhh-hcCCccHHHHHHHHHHHHHhhhhhhhhhhhhHHHHHhhhhccccc
Confidence 56 9999999 7788999999999999999 999999999999999777766677788999999999999999999
Q ss_pred CCcccHHHHHHHHHhCCcccccCCCCc-ccchhccccCCCCCCCCCcccccccchhhhhccceeeeeehhHHHHHHHHHH
Q 003558 301 LGCIMIDNLEMLLLQAPAQSVKGGESR-NLSHMLSQKLKPTQFDNPIRRCCDSTMYFLLDNWQRVWVMAQWIGVMAGLFT 379 (811)
Q Consensus 301 dG~Is~eEF~~~l~~~p~~~~~~~~~~-~ls~~~s~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~lf~ 379 (811)
.|++.++++..++.+.|.........- .++..+++.++|.+ ..+..++..+..+|++++|.+++.+++|+.++++||.
T Consensus 75 ~~y~~~~~~~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~lf~ 153 (646)
T KOG0039|consen 75 KGYITNEDLEILLLQIPTLLFAILLSFANLSLLLSQPLKPTR-RKPLLRNLVRMGAFLPNLWLRVWVLFLWLGLNVGLFT 153 (646)
T ss_pred cceeeecchhHHHHhchHHHHHHHHHHHHHHhhhcccccccc-ccccchheeeeeeeeccceEeeeeehHHHHHHHHHHH
Confidence 999999999999999997532111111 45667777777755 4555677788889999999999999999999999999
Q ss_pred HHHhhcccchhhHHhhhhhhcccchhhhhhhHHHHHHHHhhhhhhhhcccccccCccccCcchhhHHHHHHHHHHHHHHH
Q 003558 380 YKYIQYKNRAAFEVMGHCVCMAKGAAETLKFNMALILLPVCRNTITWLRNKTKLSGVVPFDDNLNFHKVIAVGISIGVGI 459 (811)
Q Consensus 380 ~~~~~y~~~~~~~~~g~~~~~arg~a~~l~~n~~lillp~~Rn~i~~L~~~~~l~~~v~~d~~~~fHk~ig~~~~~~~~l 459 (811)
|++.+|.....+++||+|+++++++|.++++||+++++|+|||.++||+..+.+...+|+|+++.||+.+|..+..++.+
T Consensus 154 ~~~~~y~~~~~~~~~g~~~~~~~~~~~~l~~~~~~ill~~~R~~~~~L~~~~fl~~~~p~~~n~~fh~l~g~~~~~~~~~ 233 (646)
T KOG0039|consen 154 WRFLQYVYLGTRHILGLCLALARGSAETLNFNMALILLPVCRNRLTFLRCSTFLFSYLPFDRNLNFHKLVALTIAVFILL 233 (646)
T ss_pred HHHHHHHhhhhhhhhhheeeeeccccccchhhHHHHHHHHHHHHHHHHHHhhhhheEeeccccchHHHHHHHHHHHHHHH
Confidence 99999988888899999999999999999999999999999999999995555666799999999999999999999999
Q ss_pred HHHhhhccccceeeecCcCccC-CCCcccCCCCcchhhhhhcchhHHHHHHHHHHHHHHHhcchhhhcccCCCCCccccc
Q 003558 460 HAISHLACDFPRLINASEEKYE-PMEPYFGDQPKNYWHFVKSVEGVTGIVMVVLMAIAFTLATPWFRRNKLNLPKPLKKL 538 (811)
Q Consensus 460 H~i~~l~~~f~~~~~~~~~~~~-~~~~~~~~~~~~y~~~~~~~~~~tGiv~~v~~~i~~~~s~~~~Rr~~~~~~~p~~~~ 538 (811)
|.++|.+|.++.++|+....+. ....+++ ++.|+++..++.+++|++++++|.+|+++|+++|||+
T Consensus 234 H~w~~~~~~~~~~ih~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~tGv~~~i~~~im~v~s~~~fRR~----------- 300 (646)
T KOG0039|consen 234 HIWLHLVNFFPFLVHGLEYTISLASELFFL--PKTYKWLLLGVVGLTGVILLILMLIMFVLSLPFFRRR----------- 300 (646)
T ss_pred HHHHHHHHHHHHHHhhhHHHHHHHHHhccc--chhhhhhhcCCCcchhHHHHHHHHHHHHHhhHHHHHH-----------
Confidence 9999999999998887533221 2222233 5578889999999999999999999999999999998
Q ss_pred cchhHHHHHHHHHHHHHHHHHHHhhhhhhccccccceeeehhhHHHHHHHHHHHHHHhhccccceEEEEEEEecCCEEEE
Q 003558 539 TGFNAFWYSHHLFVIVYTLLIVHGQYLYLTKKWYKKTTWMYLAIPICLYATERLIRALRSSIKAVSIQKVAVYPGNVLAL 618 (811)
Q Consensus 539 ~~ye~F~~~H~l~~i~~vll~~H~~~~~~~~~w~~~~~w~y~~~~~~l~~~dr~~R~~r~~~~~~~i~~v~~~~~~v~~l 618 (811)
.||+|||+||+++++|+++++||...++. .+|+|+++|+++|++||++|..|+ ..++++.++..+|+|++++
T Consensus 301 -~~e~F~ytH~l~~v~~illi~hg~~~~~~------~~w~~~~~p~~ly~~dR~~r~~r~-~~~~~i~~~~llp~~vi~L 372 (646)
T KOG0039|consen 301 -FYEAFWYTHHLYIVFYILLIIHGGFRLLG------TTWMYIAVPVLLYILDRILRFLRS-QKNVKIAKVVLLPSDVLEL 372 (646)
T ss_pred -HHHHHHHHHHHHHHHHHHHHHHhcccccc------cchhHHHHHHHHHHHHHHHHHHHH-hcCceEEEEEEcCCCeEEE
Confidence 79999999999999999999999865432 689999999999999999999998 5789999999999999999
Q ss_pred EEEcCCCcccCCCcEEEEEeccCCCCeeecCcccCCCCCCeEEEEEEEcCCccHhHHHHhhhccCCCCCCCcccccccCC
Q 003558 619 HMSKPDRFRYKSGQYMFVNCAAVSPFEWHPFSITSAPDDDYLSVHIRTLGDWTRQLRTVFSEVCRPPPNGISGLLRAEGH 698 (811)
Q Consensus 619 ~l~~p~~~~~~pGQyv~l~~p~~s~~e~HPFSIas~p~~~~l~~~Ik~~g~~T~~L~~~~~~~~~~~~~G~sg~~~~~~~ 698 (811)
++++|++|+|+||||+||+||.++.+|||||||+|+|+|+++++|||++||||++|++.++..+++...+.
T Consensus 373 ~~~Kp~~f~y~~Gqyifv~~p~ls~~qwHPFTItSsp~dd~lsvhIk~~g~wT~~L~~~~~~~~~~~~~~~--------- 443 (646)
T KOG0039|consen 373 IMSKPPGFKYKPGQYIFVNCPSLSKLEWHPFTITSAPEDDFLSVHIKALGDWTEKLRNAFSEVSQPPESDK--------- 443 (646)
T ss_pred EEeCCCCCCCCCCCEEEEECccccccccCCceeecCCCCCEEEEEEEecCcHHHHHHHHHhhhcccccccc---------
Confidence 99999999999999999999999999999999999999999999999999999999999875443322210
Q ss_pred CCCCCCEEEEEcccCCCCCCCCCCCeEEEEEeCcCHHHHHHHHHHHHHhcccc
Q 003558 699 NNPDFPRVLIDGPYGAPAQDYKEYEVVLLVGLGIGATPMISIVKDIVNNMKAI 751 (811)
Q Consensus 699 ~~~~~~~v~idGPyG~~~~~~~~~~~vllIagGiGITP~lsil~~l~~~~~~~ 751 (811)
....+++.||||||.+.+++.++++++|||||+|+||++|++++++++.+..
T Consensus 444 -~~~~~~i~IdGPYG~~s~d~~~~e~~vLV~~GiGvtPf~sil~~l~~~~~~~ 495 (646)
T KOG0039|consen 444 -SYPFPKILIDGPYGAPSQDVFKYEVLVLVGGGIGVTPFASILKDLLNKISLG 495 (646)
T ss_pred -cccCceEEEECCCCCCchhhhhcceEEEEccCcccCccHHHHHHHHhhccCC
Confidence 0125899999999999999999999999999999999999999999986544
No 2
>PLN02631 ferric-chelate reductase
Probab=100.00 E-value=9e-48 Score=448.94 Aligned_cols=314 Identities=25% Similarity=0.443 Sum_probs=248.3
Q ss_pred hhHHHHHHHHHHHHHhhcccchh-------h---HHhhhhhhcccchhhhhhhHHHHHHHHhhhh-hhhhcccccccCcc
Q 003558 368 AQWIGVMAGLFTYKYIQYKNRAA-------F---EVMGHCVCMAKGAAETLKFNMALILLPVCRN-TITWLRNKTKLSGV 436 (811)
Q Consensus 368 ~l~~~~~~~lf~~~~~~y~~~~~-------~---~~~g~~~~~arg~a~~l~~n~~lillp~~Rn-~i~~L~~~~~l~~~ 436 (811)
++++.+.+++++|.+..|-.... . ........+|.++|.+...||+++++|++|| .+.|+++
T Consensus 110 ~~~~~~f~~~~~w~~~~y~~~~~~~~~~~~~~~~~~~~~l~~ig~RtGila~~~lpll~L~a~Rnn~L~~ltG------- 182 (699)
T PLN02631 110 LTFSLLFVALLAWSLYNYLYLSYHVHLHNDDNAKIWQAKFRAFGLRIGYVGHICWAFLFFPVTRASTILPLVG------- 182 (699)
T ss_pred HHHHHHHHHHHHHHHHHHHHhhheeccCCccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCHHHHHHC-------
Confidence 56777777777776654432110 0 0122334678899988899999999999998 4889975
Q ss_pred ccCcchhhHHHHHHHHHHHHHHHHHHhhhccccceeeecCcCccCCCCcccCCCCcchhhhhhcchhHHHHHHHHHHHHH
Q 003558 437 VPFDDNLNFHKVIAVGISIGVGIHAISHLACDFPRLINASEEKYEPMEPYFGDQPKNYWHFVKSVEGVTGIVMVVLMAIA 516 (811)
Q Consensus 437 v~~d~~~~fHk~ig~~~~~~~~lH~i~~l~~~f~~~~~~~~~~~~~~~~~~~~~~~~y~~~~~~~~~~tGiv~~v~~~i~ 516 (811)
++||+++.||||+|+++++++++|+++++. .+ ...+.+. ..+... ..| ..+++|+++++++++|
T Consensus 183 ~s~e~~i~yHRWlGri~~~la~iH~i~y~i-~~-----~~~~~~~---~~~~w~-~~~------~~~~~GviA~v~~~lm 246 (699)
T PLN02631 183 LTSESSIKYHIWLGHVSNFLFLVHTVVFLI-YW-----AMINKLM---ETFAWN-PTY------VPNLAGTIAMVIGIAM 246 (699)
T ss_pred CCHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HH-----Hhhchhh---hhhhcc-ccc------chHHHHHHHHHHHHHH
Confidence 579999999999999999999999999974 11 1011110 000000 112 2357899999999999
Q ss_pred HHhcchhhhcccCCCCCccccccchhHHHHHHHHHHHHHHHHHHHhhhhhhccccccceeeeh-hhHHHHHHHHHHHHHH
Q 003558 517 FTLATPWFRRNKLNLPKPLKKLTGFNAFWYSHHLFVIVYTLLIVHGQYLYLTKKWYKKTTWMY-LAIPICLYATERLIRA 595 (811)
Q Consensus 517 ~~~s~~~~Rr~~~~~~~p~~~~~~ye~F~~~H~l~~i~~vll~~H~~~~~~~~~w~~~~~w~y-~~~~~~l~~~dr~~R~ 595 (811)
+++|+++|||+ +||+|+++|++++++++++++|... .|.| +++++++|++||++|.
T Consensus 247 ~~~Sl~~~RRr------------~YE~F~~~Hillaifiv~~~~H~g~-----------~w~~~~~~~ialw~~DR~lR~ 303 (699)
T PLN02631 247 WVTSLPSFRRK------------KFELFFYTHHLYGLYIVFYVIHVGD-----------SWFCMILPNIFLFFIDRYLRF 303 (699)
T ss_pred HHhccHHHHhh------------hhhHHHHHHHHHHHHHHheEEecCC-----------chHHHHHHHHHHHHHHHHHHH
Confidence 99999999997 7999999999998866667888531 2433 3456789999999999
Q ss_pred hhccccceEEEEEEEecCCEEEEEEEcCCCcccCCCcEEEEEeccCCCCeeecCcccCCCC--CCeEEEEEEEcCCccHh
Q 003558 596 LRSSIKAVSIQKVAVYPGNVLALHMSKPDRFRYKSGQYMFVNCAAVSPFEWHPFSITSAPD--DDYLSVHIRTLGDWTRQ 673 (811)
Q Consensus 596 ~r~~~~~~~i~~v~~~~~~v~~l~l~~p~~~~~~pGQyv~l~~p~~s~~e~HPFSIas~p~--~~~l~~~Ik~~g~~T~~ 673 (811)
+|... ..++++++.++++++++++++|++++|+||||++|++|..+.+|+|||||+|.|+ ++.++++||+.|+||++
T Consensus 304 ~r~~~-~~~lv~~~~l~~d~l~l~~~~~~~~~~~PGQfvfL~~p~~s~~q~HPFSIaSsp~~~~~~L~~~IK~~Gg~T~~ 382 (699)
T PLN02631 304 LQSTK-RSRLVSARILPSDNLELTFSKTPGLHYTPTSILFLHVPSISKLQWHPFTITSSSNLEKDTLSVVIRRQGSWTQK 382 (699)
T ss_pred HHHhc-eEEEEEEEEeCCCeEEEEEEcCCCCcCCCCceEEEEeccCCccceEEEEEeccCCCCCCEEEEEEEcCChHHHH
Confidence 98764 4788889999999999999988889999999999999999899999999999984 57899999999999999
Q ss_pred HHHHhhhccCCCCCCCcccccccCCCCCCCCEEEEEcccCCCCCCCCCCCeEEEEEeCcCHHHHHHHHHHHHHh
Q 003558 674 LRTVFSEVCRPPPNGISGLLRAEGHNNPDFPRVLIDGPYGAPAQDYKEYEVVLLVGLGIGATPMISIVKDIVNN 747 (811)
Q Consensus 674 L~~~~~~~~~~~~~G~sg~~~~~~~~~~~~~~v~idGPyG~~~~~~~~~~~vllIagGiGITP~lsil~~l~~~ 747 (811)
|++.++. .| ...+|.||||||.+..+..+++++|+||||+||||++|++++++++
T Consensus 383 L~~~l~~------~g-------------~~i~V~VeGPYG~~~~~~~~~~~vVlIAGGsGITP~lSiL~~ll~~ 437 (699)
T PLN02631 383 LYTHLSS------SI-------------DSLEVSTEGPYGPNSFDVSRHNSLILVSGGSGITPFISVIRELIFQ 437 (699)
T ss_pred HHHhhhc------CC-------------CeeEEEEECCCCCCCCCcCCCCcEEEEEeCcChHhHHHHHHHHHhc
Confidence 9887632 11 1368999999998765667889999999999999999999999865
No 3
>PLN02292 ferric-chelate reductase
Probab=100.00 E-value=5.7e-46 Score=434.79 Aligned_cols=288 Identities=24% Similarity=0.445 Sum_probs=236.4
Q ss_pred hhhcccchhhhhhhHHHHHHHHhhhhh-hhhcccccccCccccCcchhhHHHHHHHHHHHHHHHHHHhhhccccceeeec
Q 003558 397 CVCMAKGAAETLKFNMALILLPVCRNT-ITWLRNKTKLSGVVPFDDNLNFHKVIAVGISIGVGIHAISHLACDFPRLINA 475 (811)
Q Consensus 397 ~~~~arg~a~~l~~n~~lillp~~Rn~-i~~L~~~~~l~~~v~~d~~~~fHk~ig~~~~~~~~lH~i~~l~~~f~~~~~~ 475 (811)
...+|.++|....++|+++++|++||. +.||++ +|||+++.||||+|+++++++++|++++++. +.
T Consensus 166 l~~vg~R~Gila~~~lpll~l~~~Rnn~L~~ltG-------~s~e~f~~yHRWlGrii~ll~~lH~i~y~i~------~~ 232 (702)
T PLN02292 166 LDSIAVRLGLVGNICLAFLFYPVARGSSLLAAVG-------LTSESSIKYHIWLGHLVMTLFTSHGLCYIIY------WI 232 (702)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhcCCHHHHHHC-------CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH------HH
Confidence 345788999888999999999999984 789975 6899999999999999999999999999742 11
Q ss_pred CcCccCCCCcccCCCCcchhhhhhcchhHHHHHHHHHHHHHHHhcchhhhcccCCCCCccccccchhHHHHHHHHHHHHH
Q 003558 476 SEEKYEPMEPYFGDQPKNYWHFVKSVEGVTGIVMVVLMAIAFTLATPWFRRNKLNLPKPLKKLTGFNAFWYSHHLFVIVY 555 (811)
Q Consensus 476 ~~~~~~~~~~~~~~~~~~y~~~~~~~~~~tGiv~~v~~~i~~~~s~~~~Rr~~~~~~~p~~~~~~ye~F~~~H~l~~i~~ 555 (811)
....+..+. .| ...+...++|+++++++.+|+++|.+++||+ +||.|+++|+++++++
T Consensus 233 ~~~~~~~~~---------~w-~~~~~~~i~G~iAlv~~~il~v~Sl~~iRR~------------~YE~F~~~HiL~~v~~ 290 (702)
T PLN02292 233 SMNQVSQML---------EW-DRTGVSNLAGEIALVAGLVMWATTYPKIRRR------------FFEVFFYTHYLYIVFM 290 (702)
T ss_pred hcCchhhhh---------hc-cccchHHHHHHHHHHHHHHHHHHhhHHHHhc------------ccHhHHHHHHHHHHHH
Confidence 111111110 11 1123346899999999999999999999998 7999999999998877
Q ss_pred HHHHHHhhhhhhccccccceeeehhhHHHHHHHHHHHHHHhhccccceEEEEEEEecCCEEEEEEEcCCCcccCCCcEEE
Q 003558 556 TLLIVHGQYLYLTKKWYKKTTWMYLAIPICLYATERLIRALRSSIKAVSIQKVAVYPGNVLALHMSKPDRFRYKSGQYMF 635 (811)
Q Consensus 556 vll~~H~~~~~~~~~w~~~~~w~y~~~~~~l~~~dr~~R~~r~~~~~~~i~~v~~~~~~v~~l~l~~p~~~~~~pGQyv~ 635 (811)
+++++|....+ +.++++++++|++||++|.+|.+ ..+++++++.++++++++++++|+.++|+||||+|
T Consensus 291 v~~~~H~~~~~----------~~~~~~~i~l~~~DR~lR~~r~~-~~~~Iv~~~~l~~dvv~L~~~~~~~~~~~PGQ~vf 359 (702)
T PLN02292 291 LFFVFHVGISF----------ALISFPGFYIFLVDRFLRFLQSR-NNVKLVSARVLPCDTVELNFSKNPMLMYSPTSIMF 359 (702)
T ss_pred eeeehhhhhHH----------HHHHHHHHHHHHHHHHHHHHHhh-cceEEEEEEEcCCCEEEEEEEcCCCCCcCCCCeEE
Confidence 77889964211 12344567799999999999874 68899999999999999999998889999999999
Q ss_pred EEeccCCCCeeecCcccCCC--CCCeEEEEEEEcCCccHhHHHHhhhccCCCCCCCcccccccCCCCCCCCEEEEEcccC
Q 003558 636 VNCAAVSPFEWHPFSITSAP--DDDYLSVHIRTLGDWTRQLRTVFSEVCRPPPNGISGLLRAEGHNNPDFPRVLIDGPYG 713 (811)
Q Consensus 636 l~~p~~s~~e~HPFSIas~p--~~~~l~~~Ik~~g~~T~~L~~~~~~~~~~~~~G~sg~~~~~~~~~~~~~~v~idGPyG 713 (811)
+++|..+.+++|||||+|+| ++++++++||..|+||++|.+.++. |. .....+|.|+||||
T Consensus 360 L~~P~~s~~q~HPFTIaSsp~~~~~~l~l~IK~~G~~T~~L~~~l~~-------gd----------~i~~~~V~VeGPYG 422 (702)
T PLN02292 360 VNIPSISKLQWHPFTITSSSKLEPEKLSVMIKSQGKWSTKLYHMLSS-------SD----------QIDRLAVSVEGPYG 422 (702)
T ss_pred EEEccCCccceeeeEeeccCCCCCCEEEEEEEcCCchhHHHHHhCCC-------CC----------ccccceEEEECCcc
Confidence 99999888999999999987 3678999999999999999887632 20 01135799999999
Q ss_pred CCCCCCCCCCeEEEEEeCcCHHHHHHHHHHHHHh
Q 003558 714 APAQDYKEYEVVLLVGLGIGATPMISIVKDIVNN 747 (811)
Q Consensus 714 ~~~~~~~~~~~vllIagGiGITP~lsil~~l~~~ 747 (811)
.+..+...++++++||||+||||++|++++++++
T Consensus 423 ~~~~~~~~~~~vvlIAGGiGITP~lsil~~L~~~ 456 (702)
T PLN02292 423 PASTDFLRHESLVMVSGGSGITPFISIIRDLIYT 456 (702)
T ss_pred CCccccccCCcEEEEEeccCHHHHHHHHHHHHhc
Confidence 8875566789999999999999999999999875
No 4
>PLN02844 oxidoreductase/ferric-chelate reductase
Probab=100.00 E-value=9.6e-45 Score=425.57 Aligned_cols=322 Identities=24% Similarity=0.452 Sum_probs=247.4
Q ss_pred hhHHHHHHHHHHHHHhhcccchhhH-----------HhhhhhhcccchhhhhhhHHHHHHHHhhhhh-hhhcccccccCc
Q 003558 368 AQWIGVMAGLFTYKYIQYKNRAAFE-----------VMGHCVCMAKGAAETLKFNMALILLPVCRNT-ITWLRNKTKLSG 435 (811)
Q Consensus 368 ~l~~~~~~~lf~~~~~~y~~~~~~~-----------~~g~~~~~arg~a~~l~~n~~lillp~~Rn~-i~~L~~~~~l~~ 435 (811)
++++.+.+++.+|.+..|-.+..-. .......+|++.|.....||+++++|++||+ +.|+.
T Consensus 112 ~~~~~~f~~~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~va~R~G~la~~~Lpll~llv~Rnn~l~~lt------- 184 (722)
T PLN02844 112 ILAVLLFFLFLAWTFYARISNDFKKLMPVKSLNLNLWQLKYLRVATRFGLLAEACLALLLLPVLRGLALFRLL------- 184 (722)
T ss_pred HHHHHHHHHHHHHHHHHHHHhhhhhhCccccccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccHHHHhh-------
Confidence 4566666677777665543221100 1223346788898888999999999999995 56665
Q ss_pred cccCcchhhHHHHHHHHHHHHHHHHHHhhhccccceeeecCcCccCCCCcccCCCCcchhhh-hhcchhHHHHHHHHHHH
Q 003558 436 VVPFDDNLNFHKVIAVGISIGVGIHAISHLACDFPRLINASEEKYEPMEPYFGDQPKNYWHF-VKSVEGVTGIVMVVLMA 514 (811)
Q Consensus 436 ~v~~d~~~~fHk~ig~~~~~~~~lH~i~~l~~~f~~~~~~~~~~~~~~~~~~~~~~~~y~~~-~~~~~~~tGiv~~v~~~ 514 (811)
++|||+++.||||+|+++++++++|+++|+.. + ...+.. ...+|.+ ..+...++|++++++++
T Consensus 185 Gis~e~~i~fHrWlGr~~~llallH~i~~~i~-w-----~~~~~~----------~~~~~~w~~~~~~~~~G~IAlv~l~ 248 (722)
T PLN02844 185 GIQFEASVRYHVWLGTSMIFFATVHGASTLFI-W-----GISHHI----------QDEIWKWQKTGRIYLAGEIALVTGL 248 (722)
T ss_pred CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-H-----Hhhcch----------hhhhhhhccCcchhhhHHHHHHHHH
Confidence 47899999999999999999999999988731 1 100000 0011111 12223578999999999
Q ss_pred HHHHhcchhhhcccCCCCCccccccchhHHHHHHHHHHHHHHHHHHHhhhhhhccccccceeeehhhHHHHHHHHHHHHH
Q 003558 515 IAFTLATPWFRRNKLNLPKPLKKLTGFNAFWYSHHLFVIVYTLLIVHGQYLYLTKKWYKKTTWMYLAIPICLYATERLIR 594 (811)
Q Consensus 515 i~~~~s~~~~Rr~~~~~~~p~~~~~~ye~F~~~H~l~~i~~vll~~H~~~~~~~~~w~~~~~w~y~~~~~~l~~~dr~~R 594 (811)
+|+++|++++||+ +||.||++|++++++++++++|+.. ..|.|+++++++|++||++|
T Consensus 249 iL~itSl~~iRR~------------~YElF~~~H~L~ivflv~~~~H~~~----------~~~~~v~~~i~L~~~DRllR 306 (722)
T PLN02844 249 VIWITSLPQIRRK------------RFEIFYYTHHLYIVFLIFFLFHAGD----------RHFYMVFPGIFLFGLDKLLR 306 (722)
T ss_pred HHHHHhhHHHHhh------------hhHHHHHHHHHHHHHHHhhhHhhcC----------cchhhhHHHHHHHHHHHHhh
Confidence 9999999999998 7999999999998887888999742 11235556788999999999
Q ss_pred HhhccccceEEEEEEEecCCEEEEEEEcCCCcccCCCcEEEEEeccCCCCeeecCcccCCC--CCCeEEEEEEEcCCccH
Q 003558 595 ALRSSIKAVSIQKVAVYPGNVLALHMSKPDRFRYKSGQYMFVNCAAVSPFEWHPFSITSAP--DDDYLSVHIRTLGDWTR 672 (811)
Q Consensus 595 ~~r~~~~~~~i~~v~~~~~~v~~l~l~~p~~~~~~pGQyv~l~~p~~s~~e~HPFSIas~p--~~~~l~~~Ik~~g~~T~ 672 (811)
.++... ...+.+++.++++++++++++|..++|+||||++|++|..++++||||||+|.| +++.++++||..||||+
T Consensus 307 ~~~s~~-~~~vvs~~~~~~~~v~l~i~r~~~~~f~PGQfV~L~vp~~s~~q~HPFSIaS~p~~~~~~l~~~IK~~gG~T~ 385 (722)
T PLN02844 307 IVQSRP-ETCILSARLFPCKAIELVLPKDPGLKYAPTSVIFMKIPSISRFQWHPFSITSSSNIDDHTMSVIIKCEGGWTN 385 (722)
T ss_pred eEEEee-eEEEEEEEEecCCEEEEEEECCCCCCcCCCeeEEEEECCCCceeEEEEEeecCCCCCCCeEEEEEEeCCCchH
Confidence 887653 344567788899999999999888999999999999999999999999999987 56789999999999999
Q ss_pred hHHHHhhhccCCCCCCCcccccccCCCCCCCCEEEEEcccCCCCCCCCCCCeEEEEEeCcCHHHHHHHHHHHHHh
Q 003558 673 QLRTVFSEVCRPPPNGISGLLRAEGHNNPDFPRVLIDGPYGAPAQDYKEYEVVLLVGLGIGATPMISIVKDIVNN 747 (811)
Q Consensus 673 ~L~~~~~~~~~~~~~G~sg~~~~~~~~~~~~~~v~idGPyG~~~~~~~~~~~vllIagGiGITP~lsil~~l~~~ 747 (811)
+|.+.++...+ +|. ......++.|+||||.+..+...++++++||||+||||++|+++++.++
T Consensus 386 ~L~~~i~~~l~---~g~---------~~~~~~~v~VeGPYG~~s~~~~~~~~lVLIAGGiGITPfLSiLrdl~~~ 448 (722)
T PLN02844 386 SLYNKIQAELD---SET---------NQMNCIPVAIEGPYGPASVDFLRYDSLLLVAGGIGITPFLSILKEIASQ 448 (722)
T ss_pred HHHHHHHhhcc---CCC---------CcccceEEEEECCccCCCCCccCCCeEEEEEcCcCHHHHHHHHHHHHhc
Confidence 99887653211 110 0011258999999999876666789999999999999999999999864
No 5
>COG4097 Predicted ferric reductase [Inorganic ion transport and metabolism]
Probab=100.00 E-value=1e-33 Score=297.68 Aligned_cols=326 Identities=20% Similarity=0.314 Sum_probs=221.6
Q ss_pred hHHHHHHHHhhhhhhhhcccccccCccccCcchhhHHHHHHHHHHHHHHHHHHhhhccccceeeecCcCccCC--CCccc
Q 003558 410 FNMALILLPVCRNTITWLRNKTKLSGVVPFDDNLNFHKVIAVGISIGVGIHAISHLACDFPRLINASEEKYEP--MEPYF 487 (811)
Q Consensus 410 ~n~~lillp~~Rn~i~~L~~~~~l~~~v~~d~~~~fHk~ig~~~~~~~~lH~i~~l~~~f~~~~~~~~~~~~~--~~~~~ 487 (811)
..|+++++.+.| +.|++.|+ -+.|..+.||||.|+.++++.+.|-+.....+ |.....-.+.+ ++.+.
T Consensus 50 ~~msl~~~LA~R--~~~iE~~~-----~GlD~~Y~~HK~~sIlailL~l~H~~~~~~g~---w~~~~~l~~k~a~v~~~l 119 (438)
T COG4097 50 ALMSLIFLLATR--LPLIEAWF-----NGLDKIYRFHKYTSILAILLLLAHNFILFIGN---WLTLQLLNFKPAPVKPSL 119 (438)
T ss_pred HHHHHHHHHHhc--hHHHhhhh-----hhhhHHhHHHHHHHHHHHHHHHHHHHHHHcCc---chhcccccccccccchhh
Confidence 357888888888 55788763 36899999999999999999999998855322 11110001111 11110
Q ss_pred CCCCcchhhhhhcchhHHHHHHHHHHHHHHHhcchhhhcccCCCCCccccccchhHHHHHHHHHHHHHHHHHHHhhhhhh
Q 003558 488 GDQPKNYWHFVKSVEGVTGIVMVVLMAIAFTLATPWFRRNKLNLPKPLKKLTGFNAFWYSHHLFVIVYTLLIVHGQYLYL 567 (811)
Q Consensus 488 ~~~~~~y~~~~~~~~~~tGiv~~v~~~i~~~~s~~~~Rr~~~~~~~p~~~~~~ye~F~~~H~l~~i~~vll~~H~~~~~~ 567 (811)
...|...+....+..+++.+++.+. ..|. .+.||.|.+.|.+++++|++..+|.....-
T Consensus 120 ----~~~~~s~~elG~~~~yi~~~lllV~----~l~~-------------~i~Ye~WR~~H~lm~vvYilg~~H~~~l~~ 178 (438)
T COG4097 120 ----AGMWRSAKELGEWSAYIFIGLLLVW----RLWL-------------NIGYENWRIAHRLMAVVYILGLLHSYGLLN 178 (438)
T ss_pred ----hhhhHHHHHHHHHHHHHHHHHHHHH----HHHH-------------hcCchhHHHHHHHHHHHHHHHHHHHHHhcc
Confidence 0122223333333333333333321 1121 246999999999999999999999875432
Q ss_pred cccccccee-eeh---hhHHHHHHHHHHHHHHhhccccceEEEEEEEecCCEEEEEEEcCCCcccCCCcEEEEEeccCC-
Q 003558 568 TKKWYKKTT-WMY---LAIPICLYATERLIRALRSSIKAVSIQKVAVYPGNVLALHMSKPDRFRYKSGQYMFVNCAAVS- 642 (811)
Q Consensus 568 ~~~w~~~~~-w~y---~~~~~~l~~~dr~~R~~r~~~~~~~i~~v~~~~~~v~~l~l~~p~~~~~~pGQyv~l~~p~~s- 642 (811)
...|..+.. |.- .+++...+++--..+..|+..+.++|+.++..+.++++++.....++-|+||||.|+.|+...
T Consensus 179 ~~~~s~~a~swl~~~~allG~l~~iysi~~y~~~s~~y~~~vt~~~r~~~~t~eit~~l~~~~~~qaGQFAfLk~~~~~~ 258 (438)
T COG4097 179 YLYLSWPAVSWLVIAFALLGLLAAIYSIFGYFGRSFPYLGKVTAPQRGNVDTLEITIGLQGPWLYQAGQFAFLKIEIEEF 258 (438)
T ss_pred hhHhhccHHHHHHHHHHHHHHHHHHHHHHHHhhcccccceEEechhhcCcchheeecccCCcccccCCceEEEEeccccc
Confidence 223333322 321 222222333334445567777889999999999898888887777788999999999998763
Q ss_pred CCeeecCcccCCCCCCeEEEEEEEcCCccHhHHHHhhhccCCCCCCCcccccccCCCCCCCCEEEEEcccCCCCCCCCCC
Q 003558 643 PFEWHPFSITSAPDDDYLSVHIRTLGDWTRQLRTVFSEVCRPPPNGISGLLRAEGHNNPDFPRVLIDGPYGAPAQDYKEY 722 (811)
Q Consensus 643 ~~e~HPFSIas~p~~~~l~~~Ik~~g~~T~~L~~~~~~~~~~~~~G~sg~~~~~~~~~~~~~~v~idGPyG~~~~~~~~~ 722 (811)
....|||||+++.+.+.++|.||+.||+|+.|++.+ ++| .++.||||||.+..+ +.-
T Consensus 259 ~~~~HPFTIa~s~~~sel~FsIK~LGD~Tk~l~dnL-------k~G---------------~k~~vdGPYG~F~~~-~g~ 315 (438)
T COG4097 259 RMRPHPFTIACSHEGSELRFSIKALGDFTKTLKDNL-------KVG---------------TKLEVDGPYGKFDFE-RGL 315 (438)
T ss_pred cCCCCCeeeeeCCCCceEEEEehhhhhhhHHHHHhc-------cCC---------------ceEEEecCcceeecc-cCC
Confidence 457899999999877899999999999999999866 344 899999999998642 222
Q ss_pred CeEEEEEeCcCHHHHHHHHHHHHHhc-----------ccchh-hHHHHHHHhhhcCCCeEEEEEcCCCCCCCcccCcccc
Q 003558 723 EVVLLVGLGIGATPMISIVKDIVNNM-----------KAIEE-EEENDLENGRDTGVNTTIIIIDNNYEPFFFWTQKKGP 790 (811)
Q Consensus 723 ~~vllIagGiGITP~lsil~~l~~~~-----------~~~~~-~~~~el~~~~~~~~~~~i~v~~~~~~~~~~w~g~~G~ 790 (811)
++-|+|||||||||++|+++.+..+. ++.++ .+.+|+.+..++.+++++|+.+. +..|+
T Consensus 316 ~~QVWIAGGIGITPFis~l~~l~~~~s~~~V~L~Y~~~n~e~~~y~~eLr~~~qkl~~~~lHiiDS---------s~~g~ 386 (438)
T COG4097 316 NTQVWIAGGIGITPFISMLFTLAERKSDPPVHLFYCSRNWEEALYAEELRALAQKLPNVVLHIIDS---------SKDGY 386 (438)
T ss_pred cccEEEecCcCcchHHHHHHhhcccccCCceEEEEEecCCchhHHHHHHHHHHhcCCCeEEEEecC---------CCCCc
Confidence 34899999999999999999998832 22333 34557777777788888988533 34456
Q ss_pred CCHHHHHH
Q 003558 791 IQDKKSIL 798 (811)
Q Consensus 791 i~~~~~~~ 798 (811)
++.+..+.
T Consensus 387 l~~e~ler 394 (438)
T COG4097 387 LDQEDLER 394 (438)
T ss_pred cCHHHhhc
Confidence 65554443
No 6
>cd06189 flavin_oxioreductase NAD(P)H dependent flavin oxidoreductases use flavin as a substrate in mediating electron transfer from iron complexes or iron proteins. Structurally similar to ferredoxin reductases, but with only 15% sequence identity, flavin reductases reduce FAD, FMN, or riboflavin via NAD(P)H. Flavin is used as a substrate, rather than a tightly bound prosthetic group as in flavoenzymes; weaker binding is due to the absence of a binding site for the AMP moeity of FAD.
Probab=99.87 E-value=3.3e-21 Score=200.79 Aligned_cols=169 Identities=21% Similarity=0.357 Sum_probs=132.7
Q ss_pred eEEEEEEEecCCEEEEEEEcCCCcccCCCcEEEEEeccCCCCeeecCcccCCCC-CCeEEEEEEEc--CCccHhHHHHhh
Q 003558 603 VSIQKVAVYPGNVLALHMSKPDRFRYKSGQYMFVNCAAVSPFEWHPFSITSAPD-DDYLSVHIRTL--GDWTRQLRTVFS 679 (811)
Q Consensus 603 ~~i~~v~~~~~~v~~l~l~~p~~~~~~pGQyv~l~~p~~s~~e~HPFSIas~p~-~~~l~~~Ik~~--g~~T~~L~~~~~ 679 (811)
++|++++.++++++++++..|..++|+||||+.|.++.. .+|||||+|.|. ++.++|+||.. |.+|+.|.+.+
T Consensus 1 ~~v~~~~~~t~~~~~l~l~~~~~~~~~pGQ~v~l~~~~~---~~r~ySi~s~~~~~~~l~~~vk~~~~G~~s~~l~~~l- 76 (224)
T cd06189 1 CKVESIEPLNDDVYRVRLKPPAPLDFLAGQYLDLLLDDG---DKRPFSIASAPHEDGEIELHIRAVPGGSFSDYVFEEL- 76 (224)
T ss_pred CEEEEEEeCCCceEEEEEecCCCcccCCCCEEEEEcCCC---CceeeecccCCCCCCeEEEEEEecCCCccHHHHHHhc-
Confidence 368889999999999999988788999999999999864 589999999986 68999999998 67888887644
Q ss_pred hccCCCCCCCcccccccCCCCCCCCEEEEEcccCCCCCCCCCCCeEEEEEeCcCHHHHHHHHHHHHHhccc---------
Q 003558 680 EVCRPPPNGISGLLRAEGHNNPDFPRVLIDGPYGAPAQDYKEYEVVLLVGLGIGATPMISIVKDIVNNMKA--------- 750 (811)
Q Consensus 680 ~~~~~~~~G~sg~~~~~~~~~~~~~~v~idGPyG~~~~~~~~~~~vllIagGiGITP~lsil~~l~~~~~~--------- 750 (811)
++| ++|.|.||||.+......++++||||||+||||++|++++++.....
T Consensus 77 ------~~G---------------~~v~i~gP~G~~~~~~~~~~~ivliagG~GiaP~~~~l~~l~~~~~~~~v~l~~~~ 135 (224)
T cd06189 77 ------KEN---------------GLVRIEGPLGDFFLREDSDRPLILIAGGTGFAPIKSILEHLLAQGSKRPIHLYWGA 135 (224)
T ss_pred ------cCC---------------CEEEEecCCccEEeccCCCCCEEEEecCcCHHHHHHHHHHHHhcCCCCCEEEEEec
Confidence 233 78999999999876444578999999999999999999999876422
Q ss_pred --chhh-HHHHHHHhhhcCCCeE-EEEEcCCCCCCCcccCccccCCHHHHHHh
Q 003558 751 --IEEE-EENDLENGRDTGVNTT-IIIIDNNYEPFFFWTQKKGPIQDKKSILL 799 (811)
Q Consensus 751 --~~~~-~~~el~~~~~~~~~~~-i~v~~~~~~~~~~w~g~~G~i~~~~~~~~ 799 (811)
..++ +.+++.++.....+.. +++++++.++ |.|..|++++.+.+.+
T Consensus 136 r~~~~~~~~~~l~~l~~~~~~~~~~~~~s~~~~~---~~g~~g~v~~~l~~~~ 185 (224)
T cd06189 136 RTEEDLYLDELLEAWAEAHPNFTYVPVLSEPEEG---WQGRTGLVHEAVLEDF 185 (224)
T ss_pred CChhhccCHHHHHHHHHhCCCeEEEEEeCCCCcC---CccccccHHHHHHhhc
Confidence 1222 3455555555556643 3455666666 8999999988776554
No 7
>PRK08051 fre FMN reductase; Validated
Probab=99.87 E-value=5e-21 Score=200.66 Aligned_cols=172 Identities=18% Similarity=0.263 Sum_probs=131.8
Q ss_pred cceEEEEEEEecCCEEEEEEEcCCCcccCCCcEEEEEeccCCCCeeecCcccCCC-CCCeEEEEEEEcCC--ccHhHHHH
Q 003558 601 KAVSIQKVAVYPGNVLALHMSKPDRFRYKSGQYMFVNCAAVSPFEWHPFSITSAP-DDDYLSVHIRTLGD--WTRQLRTV 677 (811)
Q Consensus 601 ~~~~i~~v~~~~~~v~~l~l~~p~~~~~~pGQyv~l~~p~~s~~e~HPFSIas~p-~~~~l~~~Ik~~g~--~T~~L~~~ 677 (811)
..++|.+++.++++++.|++..+..+.|+||||++|+++.. +.|||||+|.| +++.++|+||..++ .+..+...
T Consensus 3 ~~~~v~~i~~~~~~~~~l~l~~~~~~~~~pGQ~v~l~~~~~---~~r~ySias~p~~~~~l~~~v~~~~~~~~~~~~~~~ 79 (232)
T PRK08051 3 LSCKVTSVEAITDTVYRVRLVPEAPFSFRAGQYLMVVMGEK---DKRPFSIASTPREKGFIELHIGASELNLYAMAVMER 79 (232)
T ss_pred eEEEEEEEecCCCCeEEEEEecCCCCccCCCCEEEEEcCCC---cceeecccCCCCCCCcEEEEEEEcCCCcchHHHHHH
Confidence 46789999999999999999987788999999999999754 67999999998 57889999999765 34444333
Q ss_pred hhhccCCCCCCCcccccccCCCCCCCCEEEEEcccCCCCCCCCCCCeEEEEEeCcCHHHHHHHHHHHHHhccc-------
Q 003558 678 FSEVCRPPPNGISGLLRAEGHNNPDFPRVLIDGPYGAPAQDYKEYEVVLLVGLGIGATPMISIVKDIVNNMKA------- 750 (811)
Q Consensus 678 ~~~~~~~~~~G~sg~~~~~~~~~~~~~~v~idGPyG~~~~~~~~~~~vllIagGiGITP~lsil~~l~~~~~~------- 750 (811)
+ ++| ++|.|+||||.+.......+++||||||+||||++|+++++++....
T Consensus 80 l-------~~G---------------~~v~v~gP~G~~~~~~~~~~~~vliagG~GiaP~~~~l~~~~~~~~~~~v~l~~ 137 (232)
T PRK08051 80 I-------LKD---------------GEIEVDIPHGDAWLREESERPLLLIAGGTGFSYARSILLTALAQGPNRPITLYW 137 (232)
T ss_pred c-------CCC---------------CEEEEEcCCCceEccCCCCCcEEEEecCcCcchHHHHHHHHHHhCCCCcEEEEE
Confidence 2 333 88999999999875444567899999999999999999999875322
Q ss_pred ----chhh-HHHHHHHhhhcCCCe-EEEEEcCCCCCCCcccCccccCCHHHHHHhh
Q 003558 751 ----IEEE-EENDLENGRDTGVNT-TIIIIDNNYEPFFFWTQKKGPIQDKKSILLL 800 (811)
Q Consensus 751 ----~~~~-~~~el~~~~~~~~~~-~i~v~~~~~~~~~~w~g~~G~i~~~~~~~~~ 800 (811)
.++. +.+++.++..+..+. .+++++.+++. |.|..|++++.+.+.+.
T Consensus 138 g~r~~~~~~~~~el~~l~~~~~~~~~~~~~~~~~~~---~~~~~g~v~~~l~~~~~ 190 (232)
T PRK08051 138 GGREEDHLYDLDELEALALKHPNLHFVPVVEQPEEG---WQGKTGTVLTAVMQDFG 190 (232)
T ss_pred EeccHHHhhhhHHHHHHHHHCCCcEEEEEeCCCCCC---cccceeeehHHHHhhcc
Confidence 2223 345555655555553 34455666666 89999999988766543
No 8
>cd06186 NOX_Duox_like_FAD_NADP NADPH oxidase (NOX) catalyzes the generation of reactive oxygen species (ROS) such as superoxide and hydrogen peroxide. ROS were originally identified as bactericidal agents in phagocytes, but are now also implicated in cell signaling and metabolism. NOX has a 6-alpha helix heme-binding transmembrane domain fused to a flavoprotein with the nucleotide binding domain located in the cytoplasm. Duox enzymes link a peroxidase domain to the NOX domain via a single transmembrane and EF-hand Ca2+ binding sites. The flavoprotein module has a ferredoxin like FAD/NADPH binding domain. In classical phagocytic NOX2, electron transfer occurs from NADPH to FAD to the heme of cytb to oxygen leading to superoxide formation.
Probab=99.86 E-value=4e-21 Score=197.97 Aligned_cols=127 Identities=34% Similarity=0.606 Sum_probs=105.8
Q ss_pred EEEEEec-CCEEEEEEEcCCCcccCCCcEEEEEeccC-CCCeeecCcccCCCCC--CeEEEEEEEcCCccHhHHHHhhhc
Q 003558 606 QKVAVYP-GNVLALHMSKPDRFRYKSGQYMFVNCAAV-SPFEWHPFSITSAPDD--DYLSVHIRTLGDWTRQLRTVFSEV 681 (811)
Q Consensus 606 ~~v~~~~-~~v~~l~l~~p~~~~~~pGQyv~l~~p~~-s~~e~HPFSIas~p~~--~~l~~~Ik~~g~~T~~L~~~~~~~ 681 (811)
++++.++ ++++++++..|..+.|+||||++|++|.. +.+++|||||+|.|.+ +.++|+||..+|+|+++...+...
T Consensus 2 ~~~~~~~~~~~~~l~~~~~~~~~~~pGq~v~l~~~~~~~~~~~hpfsias~~~~~~~~i~~~vk~~~G~~t~~~~~~~~~ 81 (210)
T cd06186 2 ATVELLPDSDVIRLTIPKPKPFKWKPGQHVYLNFPSLLSFWQSHPFTIASSPEDEQDTLSLIIRAKKGFTTRLLRKALKS 81 (210)
T ss_pred eEEEEecCCCEEEEEEecCCCCccCCCCEEEEEeCCCCCCcccCCcEeeeCCCCCCCEEEEEEEecCChHHHHHHHHHhC
Confidence 4567788 99999999998888999999999999988 7889999999999975 899999999966666666554320
Q ss_pred cCCCCCCCcccccccCCCCCCCCEEEEEcccCCCCCCCCCCCeEEEEEeCcCHHHHHHHHHHHHHhc
Q 003558 682 CRPPPNGISGLLRAEGHNNPDFPRVLIDGPYGAPAQDYKEYEVVLLVGLGIGATPMISIVKDIVNNM 748 (811)
Q Consensus 682 ~~~~~~G~sg~~~~~~~~~~~~~~v~idGPyG~~~~~~~~~~~vllIagGiGITP~lsil~~l~~~~ 748 (811)
.+ ...+.++.|+||||.+..+...++++||||||+||||++|++++++.+.
T Consensus 82 -~~---------------~~~~~~v~v~GP~G~~~~~~~~~~~~vliagG~GItp~~s~l~~l~~~~ 132 (210)
T cd06186 82 -PG---------------GGVSLKVLVEGPYGSSSEDLLSYDNVLLVAGGSGITFVLPILRDLLRRS 132 (210)
T ss_pred -cC---------------CCceeEEEEECCCCCCccChhhCCeEEEEeccccHhhhHHHHHHHHhhh
Confidence 00 0124889999999998745667899999999999999999999998764
No 9
>cd06210 MMO_FAD_NAD_binding Methane monooxygenase (MMO) reductase of methanotrophs catalyzes the NADH-dependent hydroxylation of methane to methanol. This multicomponent enzyme mediates electron transfer via a hydroxylase (MMOH), a coupling protein, and a reductase which is comprised of an N-terminal [2Fe-2S] ferredoxin domain, an FAD binding subdomain, and an NADH binding subdomain. Oxygenases oxidize hydrocarbons using dioxygen as the oxidant. Dioxygenases add both atom of oxygen to the substrate, while mono-oxygenases add one atom to the substrate and one atom to water.
Probab=99.85 E-value=2.3e-20 Score=195.92 Aligned_cols=173 Identities=23% Similarity=0.317 Sum_probs=131.8
Q ss_pred cceEEEEEEEecCCEEEEEEEcCCC------cccCCCcEEEEEeccCCCCeeecCcccCCCC-CCeEEEEEEEc--CCcc
Q 003558 601 KAVSIQKVAVYPGNVLALHMSKPDR------FRYKSGQYMFVNCAAVSPFEWHPFSITSAPD-DDYLSVHIRTL--GDWT 671 (811)
Q Consensus 601 ~~~~i~~v~~~~~~v~~l~l~~p~~------~~~~pGQyv~l~~p~~s~~e~HPFSIas~p~-~~~l~~~Ik~~--g~~T 671 (811)
..++|.+++.++++++.++++.|.+ +.|+||||+.|.+|.. .++|||||+|.|. ++.++|+||.. |.+|
T Consensus 2 ~~~~v~~~~~~~~~~~~l~l~~~~~~~~~~~~~~~pGQ~v~l~~~~~--~~~R~ySi~s~~~~~~~l~~~i~~~~~G~~s 79 (236)
T cd06210 2 REAEIVAVDRVSSNVVRLRLQPDDAEGAGIAAEFVPGQFVEIEIPGT--DTRRSYSLANTPNWDGRLEFLIRLLPGGAFS 79 (236)
T ss_pred ceEEEEEEeecCCceEEEEEEeCCcccccccCCcCCCCEEEEEcCCC--ccceecccCCCCCCCCEEEEEEEEcCCCccc
Confidence 3578999999999999999998765 6899999999999853 3689999999986 67899999987 6678
Q ss_pred HhHHHHhhhccCCCCCCCcccccccCCCCCCCCEEEEEcccCCCCCCCCCCCeEEEEEeCcCHHHHHHHHHHHHHhcc--
Q 003558 672 RQLRTVFSEVCRPPPNGISGLLRAEGHNNPDFPRVLIDGPYGAPAQDYKEYEVVLLVGLGIGATPMISIVKDIVNNMK-- 749 (811)
Q Consensus 672 ~~L~~~~~~~~~~~~~G~sg~~~~~~~~~~~~~~v~idGPyG~~~~~~~~~~~vllIagGiGITP~lsil~~l~~~~~-- 749 (811)
..|.+.+ ++| +++.|.||||.+..+...++++||||||+||||++++++++.....
T Consensus 80 ~~l~~~~-------~~G---------------d~v~i~gP~G~f~l~~~~~~~~vliagGtGiaP~~~~l~~~~~~~~~~ 137 (236)
T cd06210 80 TYLETRA-------KVG---------------QRLNLRGPLGAFGLRENGLRPRWFVAGGTGLAPLLSMLRRMAEWGEPQ 137 (236)
T ss_pred hhhhhCc-------CCC---------------CEEEEecCcceeeecCCCCccEEEEccCcchhHHHHHHHHHHhcCCCc
Confidence 7776533 233 8899999999986544456789999999999999999999886532
Q ss_pred ---------cchhh-HHHHHHHhhhcCCCeEE-EEEcCCCCCCCcccCccccCCHHHHHHhh
Q 003558 750 ---------AIEEE-EENDLENGRDTGVNTTI-IIIDNNYEPFFFWTQKKGPIQDKKSILLL 800 (811)
Q Consensus 750 ---------~~~~~-~~~el~~~~~~~~~~~i-~v~~~~~~~~~~w~g~~G~i~~~~~~~~~ 800 (811)
+.++. +.+++.++..+..+..+ ++++++.+. |.|..|++.+.+.+.+.
T Consensus 138 ~v~l~~~~r~~~~~~~~~~l~~l~~~~~~~~~~~~~s~~~~~---~~~~~g~~~~~l~~~l~ 196 (236)
T cd06210 138 EARLFFGVNTEAELFYLDELKRLADSLPNLTVRICVWRPGGE---WEGYRGTVVDALREDLA 196 (236)
T ss_pred eEEEEEecCCHHHhhhHHHHHHHHHhCCCeEEEEEEcCCCCC---cCCccCcHHHHHHHhhc
Confidence 22223 34555555555556433 445555555 88999999877665553
No 10
>cd06217 FNR_iron_sulfur_binding_3 Iron-sulfur binding ferredoxin reductase (FNR) proteins combine the FAD and NAD(P) binding regions of FNR with an iron-sulfur binding cluster domain. Ferredoxin-NADP+ (oxido)reductase is an FAD-containing enzyme that catalyzes the reversible electron transfer between NADP(H) and electron carrier proteins such as ferredoxin and flavodoxin. Isoforms of these flavoproteins (i.e. having a non-covalently bound FAD as a prosthetic group) are present in chloroplasts, mitochondria, and bacteria in which they participate in a wide variety of redox metabolic pathways. The C-terminal domain contains most of the NADP(H) binding residues and the N-terminal domain interacts non-covalently with the isoalloxazine rings of the flavin molecule which lies largely in a large gap between the two domains. Ferredoxin-NADP+ reductase first accepts one electron from reduced ferredoxin to form a flavin semiquinone intermediate. The enzyme then accepts a second electron to form
Probab=99.84 E-value=5.5e-20 Score=192.73 Aligned_cols=175 Identities=17% Similarity=0.245 Sum_probs=130.4
Q ss_pred ccceEEEEEEEecCCEEEEEEEcCCC--cccCCCcEEEEEeccC-CCCeeecCcccCCCCC-CeEEEEEEEc--CCccHh
Q 003558 600 IKAVSIQKVAVYPGNVLALHMSKPDR--FRYKSGQYMFVNCAAV-SPFEWHPFSITSAPDD-DYLSVHIRTL--GDWTRQ 673 (811)
Q Consensus 600 ~~~~~i~~v~~~~~~v~~l~l~~p~~--~~~~pGQyv~l~~p~~-s~~e~HPFSIas~p~~-~~l~~~Ik~~--g~~T~~ 673 (811)
|..++|.+++.+++++.++++..|+. +.|+||||+.|.+|.. +...+|||||+|.|.+ +.++|+||.. |..|..
T Consensus 1 ~~~~~v~~~~~~~~~~~~~~l~~~~~~~~~~~pGQ~v~l~~~~~~~~~~~r~ySi~s~~~~~~~l~l~v~~~~~G~~s~~ 80 (235)
T cd06217 1 WRVLRVTEIIQETPTVKTFRLAVPDGVPPPFLAGQHVDLRLTAIDGYTAQRSYSIASSPTQRGRVELTVKRVPGGEVSPY 80 (235)
T ss_pred CceEEEEEEEecCCCeEEEEEECCCCCcCCcCCcCeEEEEEecCCCceeeeeecccCCCCCCCeEEEEEEEcCCCcchHH
Confidence 45788999999999999999998876 7899999999999843 3456799999999854 5899999998 456777
Q ss_pred HHHHhhhccCCCCCCCcccccccCCCCCCCCEEEEEcccCCCCCCCCCCCeEEEEEeCcCHHHHHHHHHHHHHhccc---
Q 003558 674 LRTVFSEVCRPPPNGISGLLRAEGHNNPDFPRVLIDGPYGAPAQDYKEYEVVLLVGLGIGATPMISIVKDIVNNMKA--- 750 (811)
Q Consensus 674 L~~~~~~~~~~~~~G~sg~~~~~~~~~~~~~~v~idGPyG~~~~~~~~~~~vllIagGiGITP~lsil~~l~~~~~~--- 750 (811)
|.+.+ ++| +.|.|.||||.+..+....+++||||||+||||++++++++++....
T Consensus 81 l~~~l-------~~G---------------d~v~i~gP~G~~~~~~~~~~~~vliagG~Giap~~~~~~~~~~~~~~~~i 138 (235)
T cd06217 81 LHDEV-------KVG---------------DLLEVRGPIGTFTWNPLHGDPVVLLAGGSGIVPLMSMIRYRRDLGWPVPF 138 (235)
T ss_pred HHhcC-------CCC---------------CEEEEeCCceeeEeCCCCCceEEEEecCcCccHHHHHHHHHHhcCCCceE
Confidence 65533 233 88999999999765433468999999999999999999999875422
Q ss_pred --------chhh-HHHHHHHhhhcCCCeEE-EEEcCC-CCCCCcccCccccCCHHHHHHh
Q 003558 751 --------IEEE-EENDLENGRDTGVNTTI-IIIDNN-YEPFFFWTQKKGPIQDKKSILL 799 (811)
Q Consensus 751 --------~~~~-~~~el~~~~~~~~~~~i-~v~~~~-~~~~~~w~g~~G~i~~~~~~~~ 799 (811)
.++. +.+++.+...+..+..+ ++.+++ .+. |.+..|++++...+.+
T Consensus 139 ~l~~~~r~~~~~~~~~el~~~~~~~~~~~~~~~~s~~~~~~---~~~~~g~~~~~~l~~~ 195 (235)
T cd06217 139 RLLYSARTAEDVIFRDELEQLARRHPNLHVTEALTRAAPAD---WLGPAGRITADLIAEL 195 (235)
T ss_pred EEEEecCCHHHhhHHHHHHHHHHHCCCeEEEEEeCCCCCCC---cCCcCcEeCHHHHHhh
Confidence 1222 34455555544445333 333443 445 8899999998765543
No 11
>cd06212 monooxygenase_like The oxygenase reductase FAD/NADH binding domain acts as part of the multi-component bacterial oxygenases which oxidize hydrocarbons. These flavoprotein monooxygenases use molecular oxygen as a substrate and require reduced FAD. One atom of oxygen is incorportated into the aromatic compond, while the other is used to form a molecule of water. In contrast dioxygenases add both atoms of oxygen to the substrate.
Probab=99.84 E-value=5.7e-20 Score=192.48 Aligned_cols=173 Identities=18% Similarity=0.324 Sum_probs=129.9
Q ss_pred ceEEEEEEEecCCEEEEEEEcCC--CcccCCCcEEEEEeccCCCCeeecCcccCCCCC-CeEEEEEEEc--CCccHhHHH
Q 003558 602 AVSIQKVAVYPGNVLALHMSKPD--RFRYKSGQYMFVNCAAVSPFEWHPFSITSAPDD-DYLSVHIRTL--GDWTRQLRT 676 (811)
Q Consensus 602 ~~~i~~v~~~~~~v~~l~l~~p~--~~~~~pGQyv~l~~p~~s~~e~HPFSIas~p~~-~~l~~~Ik~~--g~~T~~L~~ 676 (811)
.++|.+++.++++++++++..+. .+.|+||||+.|++|... .+|||||+|.|.+ +.++|+||.. |.+|..|.+
T Consensus 2 ~~~v~~~~~~~~~~~~~~l~~~~~~~~~~~pGQ~v~l~~~~~~--~~r~ySi~s~~~~~~~l~l~vk~~~~G~~s~~l~~ 79 (232)
T cd06212 2 VGTVVAVEALTHDIRRLRLRLEEPEPIKFFAGQYVDITVPGTE--ETRSFSMANTPADPGRLEFIIKKYPGGLFSSFLDD 79 (232)
T ss_pred ceEEEEEeecCCCeEEEEEEcCCCCcCCcCCCCeEEEEcCCCC--cccccccCCCCCCCCEEEEEEEECCCCchhhHHhh
Confidence 56899999999999999998654 578999999999998643 7899999999865 8999999997 567777765
Q ss_pred HhhhccCCCCCCCcccccccCCCCCCCCEEEEEcccCCCCCCCCCCCeEEEEEeCcCHHHHHHHHHHHHHhccc------
Q 003558 677 VFSEVCRPPPNGISGLLRAEGHNNPDFPRVLIDGPYGAPAQDYKEYEVVLLVGLGIGATPMISIVKDIVNNMKA------ 750 (811)
Q Consensus 677 ~~~~~~~~~~~G~sg~~~~~~~~~~~~~~v~idGPyG~~~~~~~~~~~vllIagGiGITP~lsil~~l~~~~~~------ 750 (811)
.+ ++| +++.|.||||.+......++++||||||+||||++|+++++.+....
T Consensus 80 ~l-------~~G---------------~~v~i~gP~G~~~~~~~~~~~~l~iagG~Giap~~~~l~~~~~~~~~~~v~l~ 137 (232)
T cd06212 80 GL-------AVG---------------DPVTVTGPYGTCTLRESRDRPIVLIGGGSGMAPLLSLLRDMAASGSDRPVRFF 137 (232)
T ss_pred cC-------CCC---------------CEEEEEcCcccceecCCCCCcEEEEecCcchhHHHHHHHHHHhcCCCCcEEEE
Confidence 33 233 78999999999875444578999999999999999999999876432
Q ss_pred -----chhh-HHHHHHHhhhcCCCeE-EEEEcCCC--CCCCcccCccccCCHHHHHHhhc
Q 003558 751 -----IEEE-EENDLENGRDTGVNTT-IIIIDNNY--EPFFFWTQKKGPIQDKKSILLLG 801 (811)
Q Consensus 751 -----~~~~-~~~el~~~~~~~~~~~-i~v~~~~~--~~~~~w~g~~G~i~~~~~~~~~~ 801 (811)
.+++ +.+++.++.+...+.. +++.+++. +. |.+..|++++.+.+.+.+
T Consensus 138 ~~~r~~~~~~~~~~l~~l~~~~~~~~~~~~~s~~~~~~~---~~~~~g~~~~~~~~~~~~ 194 (232)
T cd06212 138 YGARTARDLFYLEEIAALGEKIPDFTFIPALSESPDDEG---WSGETGLVTEVVQRNEAT 194 (232)
T ss_pred EeccchHHhccHHHHHHHHHhCCCEEEEEEECCCCCCCC---CcCCcccHHHHHHhhccC
Confidence 1222 3455555555445533 33444432 34 888999998766555444
No 12
>cd06209 BenDO_FAD_NAD Benzoate dioxygenase reductase (BenDO) FAD/NAD binding domain. Oxygenases oxidize hydrocarbons using dioxygen as the oxidant. As a Class I bacterial dioxygenases, benzoate dioxygenase like proteins combine an [2Fe-2S] cluster containing N-terminal ferredoxin at the end fused to an FAD/NADP(P) domain. In dioxygenase FAD/NAD(P) binding domain, the reductase transfers 2 electrons from NAD(P)H to the oxygenase which insert into an aromatic substrate, an initial step in microbial aerobic degradation of aromatic rings. Flavin oxidoreductases use flavins as substrates, unlike flavoenzymes which have a flavin prosthetic group.
Probab=99.84 E-value=8e-20 Score=190.86 Aligned_cols=169 Identities=21% Similarity=0.354 Sum_probs=129.5
Q ss_pred ceEEEEEEEecCCEEEEEEEcCC--CcccCCCcEEEEEeccCCCCeeecCcccCCCCCCeEEEEEEEc--CCccHhHHHH
Q 003558 602 AVSIQKVAVYPGNVLALHMSKPD--RFRYKSGQYMFVNCAAVSPFEWHPFSITSAPDDDYLSVHIRTL--GDWTRQLRTV 677 (811)
Q Consensus 602 ~~~i~~v~~~~~~v~~l~l~~p~--~~~~~pGQyv~l~~p~~s~~e~HPFSIas~p~~~~l~~~Ik~~--g~~T~~L~~~ 677 (811)
.++|.+++.+++++++++++.|. .+.|+||||+.|++|... .+|||||+|.|.++.++|+||.. |..|..|.+.
T Consensus 3 ~~~V~~~~~~t~~~~~l~l~~~~~~~~~~~pGQ~v~l~~~~~~--~~r~ysi~s~~~~~~i~~~i~~~~~G~~s~~l~~~ 80 (228)
T cd06209 3 EATVTEVERLSDSTIGLTLELDEAGALAFLPGQYVNLQVPGTD--ETRSYSFSSAPGDPRLEFLIRLLPGGAMSSYLRDR 80 (228)
T ss_pred eEEEEEEEEcCCCeEEEEEEcCCCCcCccCCCCEEEEEeCCCC--cccccccccCCCCCeEEEEEEEcCCCcchhhHHhc
Confidence 57899999999999999999887 678999999999998543 68999999999778999999986 6678877653
Q ss_pred hhhccCCCCCCCcccccccCCCCCCCCEEEEEcccCCCCCCCCCCCeEEEEEeCcCHHHHHHHHHHHHHhccc-------
Q 003558 678 FSEVCRPPPNGISGLLRAEGHNNPDFPRVLIDGPYGAPAQDYKEYEVVLLVGLGIGATPMISIVKDIVNNMKA------- 750 (811)
Q Consensus 678 ~~~~~~~~~~G~sg~~~~~~~~~~~~~~v~idGPyG~~~~~~~~~~~vllIagGiGITP~lsil~~l~~~~~~------- 750 (811)
+ ++| +.+.|.||+|.+... ...++++|||||+||||++|++++++.....
T Consensus 81 l-------~~G---------------~~v~v~gP~G~~~~~-~~~~~~vlia~GtGIaP~~~ll~~~~~~~~~~~v~l~~ 137 (228)
T cd06209 81 A-------QPG---------------DRLTLTGPLGSFYLR-EVKRPLLMLAGGTGLAPFLSMLDVLAEDGSAHPVHLVY 137 (228)
T ss_pred c-------CCC---------------CEEEEECCcccceec-CCCCeEEEEEcccCHhHHHHHHHHHHhcCCCCcEEEEE
Confidence 3 233 789999999998653 3347899999999999999999999876421
Q ss_pred ----chhh-HHHHHHHhhhcCCCeEEE-EEcCCCCCCCcccCccccCCHHHHHHh
Q 003558 751 ----IEEE-EENDLENGRDTGVNTTII-IIDNNYEPFFFWTQKKGPIQDKKSILL 799 (811)
Q Consensus 751 ----~~~~-~~~el~~~~~~~~~~~i~-v~~~~~~~~~~w~g~~G~i~~~~~~~~ 799 (811)
.++. +.+++.++..+..+..++ ++++ .+. |.+..|++++.+.+..
T Consensus 138 ~~r~~~~~~~~~~l~~l~~~~~~~~~~~~~s~-~~~---~~~~~g~v~~~~~~~~ 188 (228)
T cd06209 138 GVTRDADLVELDRLEALAERLPGFSFRTVVAD-PDS---WHPRKGYVTDHLEAED 188 (228)
T ss_pred ecCCHHHhccHHHHHHHHHhCCCeEEEEEEcC-CCc---cCCCcCCccHHHHHhh
Confidence 2223 345555555555564433 3443 333 7889999998766543
No 13
>cd06216 FNR_iron_sulfur_binding_2 Iron-sulfur binding ferredoxin reductase (FNR) proteins combine the FAD and NAD(P) binding regions of FNR with an iron-sulfur binding cluster domain. Ferredoxin-NADP+ (oxido)reductase is an FAD-containing enzyme that catalyzes the reversible electron transfer between NADP(H) and electron carrier proteins such as ferredoxin and flavodoxin. Isoforms of these flavoproteins (i.e. having a non-covalently bound FAD as a prosthetic group) are present in chloroplasts, mitochondria, and bacteria in which they participate in a wide variety of redox metabolic pathways. The C-terminal domain contains most of the NADP(H) binding residues and the N-terminal domain interacts non-covalently with the isoalloxazine rings of the flavin molecule which lies largely in a large gap betweed the two domains. Ferredoxin-NADP+ reductase first accepts one electron from reduced ferredoxin to form a flavin semiquinone intermediate. The enzyme then accepts a second electron to for
Probab=99.84 E-value=7.3e-20 Score=193.05 Aligned_cols=180 Identities=14% Similarity=0.212 Sum_probs=134.4
Q ss_pred HHHHHHHhh----ccccceEEEEEEEecCCEEEEEEEcCCC-cccCCCcEEEEEeccCCCCeeecCcccCCCC--CCeEE
Q 003558 589 TERLIRALR----SSIKAVSIQKVAVYPGNVLALHMSKPDR-FRYKSGQYMFVNCAAVSPFEWHPFSITSAPD--DDYLS 661 (811)
Q Consensus 589 ~dr~~R~~r----~~~~~~~i~~v~~~~~~v~~l~l~~p~~-~~~~pGQyv~l~~p~~s~~e~HPFSIas~p~--~~~l~ 661 (811)
+||.+|.++ .....++|.+++.+++++.++++..|.. ..|+||||++|.++..+...+|||||+|.|. ++.++
T Consensus 2 ~~~~~~~~~~~~~~~~~~~~v~~i~~~~~~~~~i~l~~~~~~~~~~pGQ~i~l~~~~~~~~~~r~ysi~s~~~~~~~~l~ 81 (243)
T cd06216 2 VDFYLELINPLWSARELRARVVAVRPETADMVTLTLRPNRGWPGHRAGQHVRLGVEIDGVRHWRSYSLSSSPTQEDGTIT 81 (243)
T ss_pred chhhhhhcCCCcccceeEEEEEEEEEcCCCcEEEEEecCCCCCCcCCCceEEEEEEECCeEEEEEEeccCCCcCCCCeEE
Confidence 467777644 3445788999999999999999998765 4799999999999876666789999999986 78999
Q ss_pred EEEEEc--CCccHhHHHHhhhccCCCCCCCcccccccCCCCCCCCEEEEEcccCCCCCCCCCCCeEEEEEeCcCHHHHHH
Q 003558 662 VHIRTL--GDWTRQLRTVFSEVCRPPPNGISGLLRAEGHNNPDFPRVLIDGPYGAPAQDYKEYEVVLLVGLGIGATPMIS 739 (811)
Q Consensus 662 ~~Ik~~--g~~T~~L~~~~~~~~~~~~~G~sg~~~~~~~~~~~~~~v~idGPyG~~~~~~~~~~~vllIagGiGITP~ls 739 (811)
|+||.. |.+|..|.+.+ ++| ++|.|.||||.+..+...++++++||||+||||++|
T Consensus 82 ~~ik~~~~G~~s~~l~~~~-------~~G---------------d~v~i~gP~G~f~l~~~~~~~~v~iagG~Giap~~s 139 (243)
T cd06216 82 LTVKAQPDGLVSNWLVNHL-------APG---------------DVVELSQPQGDFVLPDPLPPRLLLIAAGSGITPVMS 139 (243)
T ss_pred EEEEEcCCCcchhHHHhcC-------CCC---------------CEEEEECCceeeecCCCCCCCEEEEecCccHhHHHH
Confidence 999998 88888886533 233 889999999997654444789999999999999999
Q ss_pred HHHHHHHhcc-----------cchhh-HHHHHHHhhhcCCCeEEE-EEcCCCCCCCcccCccccCCHHHHHH
Q 003558 740 IVKDIVNNMK-----------AIEEE-EENDLENGRDTGVNTTII-IIDNNYEPFFFWTQKKGPIQDKKSIL 798 (811)
Q Consensus 740 il~~l~~~~~-----------~~~~~-~~~el~~~~~~~~~~~i~-v~~~~~~~~~~w~g~~G~i~~~~~~~ 798 (811)
+++++.+... +.++. +.+++.++.++..+..++ +.+++ +..|+++++..+.
T Consensus 140 ~l~~~~~~~~~~~i~l~~~~r~~~~~~~~~el~~l~~~~~~~~~~~~~s~~--------~~~g~~~~~~l~~ 203 (243)
T cd06216 140 MLRTLLARGPTADVVLLYYARTREDVIFADELRALAAQHPNLRLHLLYTRE--------ELDGRLSAAHLDA 203 (243)
T ss_pred HHHHHHhcCCCCCEEEEEEcCChhhhHHHHHHHHHHHhCCCeEEEEEEcCC--------ccCCCCCHHHHHH
Confidence 9999987521 12222 455665555455554333 33322 3567887765443
No 14
>cd06191 FNR_iron_sulfur_binding Iron-sulfur binding Ferredoxin Reductase (FNR) proteins combine the FAD and NAD(P) binding regions of FNR with a C-terminal iron-sulfur binding cluster domain. FNR was intially identified as a chloroplast reductase activity catalyzing the electron transfer from reduced iron-sulfur protein ferredoxin to NADP+ as the final step in the electron transport mechanism of photosystem I. FNR transfers electrons from reduced ferredoxin to FAD (forming FADH2 via a semiquinone intermediate) and then transfers a hydride ion to convert NADP+ to NADPH. FNR has since been shown to utilize a variety of electron acceptors and donors and has a variety of physiological functions including nitrogen assimilation, dinitrogen fixation, steroid hydroxylation, fatty acid metabolism, oxygenase activity, and methnae assimilation in a variety of organisms. FNR has an NAD(P)-binding sub-domain of the alpha/beta class and a discrete (usually N-terminal) flavin sub-domain which vary in
Probab=99.84 E-value=8.5e-20 Score=191.01 Aligned_cols=171 Identities=16% Similarity=0.232 Sum_probs=128.5
Q ss_pred EEEEEEEecCCEEEEEEEcCCC--cccCCCcEEEEEeccCCCCeeecCcccCCCCCCeEEEEEEEc--CCccHhHHHHhh
Q 003558 604 SIQKVAVYPGNVLALHMSKPDR--FRYKSGQYMFVNCAAVSPFEWHPFSITSAPDDDYLSVHIRTL--GDWTRQLRTVFS 679 (811)
Q Consensus 604 ~i~~v~~~~~~v~~l~l~~p~~--~~~~pGQyv~l~~p~~s~~e~HPFSIas~p~~~~l~~~Ik~~--g~~T~~L~~~~~ 679 (811)
+|++++.+++++.++++..|.. +.|+||||+.|.++..+...+|||||+|.|.++.++|+||.. |.+|..|.+.+
T Consensus 2 ~v~~i~~~t~~~~~~~l~~~~~~~~~~~pGQ~v~l~~~~~~~~~~r~ySi~s~~~~~~l~~~v~~~~~G~~s~~l~~~~- 80 (231)
T cd06191 2 RVAEVRSETPDAVTIVFAVPGPLQYGFRPGQHVTLKLDFDGEELRRCYSLCSSPAPDEISITVKRVPGGRVSNYLREHI- 80 (231)
T ss_pred EEEEEEecCCCcEEEEEeCCCCCCCCCCCCCeEEEEEecCCeEEeeeeeccCCCCCCeEEEEEEECCCCccchHHHhcC-
Confidence 6788899999999999997764 589999999999976555678999999998878899999998 67888876533
Q ss_pred hccCCCCCCCcccccccCCCCCCCCEEEEEcccCCCCCCCCCCCeEEEEEeCcCHHHHHHHHHHHHHhccc---------
Q 003558 680 EVCRPPPNGISGLLRAEGHNNPDFPRVLIDGPYGAPAQDYKEYEVVLLVGLGIGATPMISIVKDIVNNMKA--------- 750 (811)
Q Consensus 680 ~~~~~~~~G~sg~~~~~~~~~~~~~~v~idGPyG~~~~~~~~~~~vllIagGiGITP~lsil~~l~~~~~~--------- 750 (811)
++| +++.|+||||.+..+....+++||||||+||||++||++++.+....
T Consensus 81 ------~~G---------------d~v~i~gP~G~f~l~~~~~~~~lliagG~Gitp~~s~~~~~~~~~~~~~v~l~~~~ 139 (231)
T cd06191 81 ------QPG---------------MTVEVMGPQGHFVYQPQPPGRYLLVAAGSGITPLMAMIRATLQTAPESDFTLIHSA 139 (231)
T ss_pred ------CCC---------------CEEEEeCCccceEeCCCCCCcEEEEecCccHhHHHHHHHHHHhcCCCCCEEEEEec
Confidence 234 88999999999865444567899999999999999999998865322
Q ss_pred --chhh-HHHHHHHhhhcCCCeEE-EEEcC-C-CCCCCcccCccccCCHHHHHHh
Q 003558 751 --IEEE-EENDLENGRDTGVNTTI-IIIDN-N-YEPFFFWTQKKGPIQDKKSILL 799 (811)
Q Consensus 751 --~~~~-~~~el~~~~~~~~~~~i-~v~~~-~-~~~~~~w~g~~G~i~~~~~~~~ 799 (811)
.++. +.+++.++..+..+..+ ++.++ + .+. |.+..|++.+.+.+.+
T Consensus 140 r~~~~~~~~~el~~l~~~~~~~~~~~~~s~~~~~~~---~~~~~~~~~~~l~~~~ 191 (231)
T cd06191 140 RTPADMIFAQELRELADKPQRLRLLCIFTRETLDSD---LLHGRIDGEQSLGAAL 191 (231)
T ss_pred CCHHHHhHHHHHHHHHHhCCCeEEEEEECCCCCCcc---ccCCcccccHHHHHHh
Confidence 2222 34455554444455333 33433 2 234 8888899887766544
No 15
>PRK07609 CDP-6-deoxy-delta-3,4-glucoseen reductase; Validated
Probab=99.84 E-value=3.8e-20 Score=204.92 Aligned_cols=173 Identities=21% Similarity=0.325 Sum_probs=131.8
Q ss_pred ccceEEEEEEEecCCEEEEEEEcCC--CcccCCCcEEEEEeccCCCCeeecCcccCCCCC-CeEEEEEEEc--CCccHhH
Q 003558 600 IKAVSIQKVAVYPGNVLALHMSKPD--RFRYKSGQYMFVNCAAVSPFEWHPFSITSAPDD-DYLSVHIRTL--GDWTRQL 674 (811)
Q Consensus 600 ~~~~~i~~v~~~~~~v~~l~l~~p~--~~~~~pGQyv~l~~p~~s~~e~HPFSIas~p~~-~~l~~~Ik~~--g~~T~~L 674 (811)
...++|++++.++++++.++|..|. .+.|+||||+.|.+|.. ++|||||+|.|.+ +.++|+||.. |.+|..|
T Consensus 102 ~~~~~V~~~~~~~~d~~~l~l~~~~~~~~~~~pGQfv~l~~~~~---~~R~ySias~p~~~~~l~~~ik~~~~G~~s~~l 178 (339)
T PRK07609 102 KLPCRVASLERVAGDVMRLKLRLPATERLQYLAGQYIEFILKDG---KRRSYSIANAPHSGGPLELHIRHMPGGVFTDHV 178 (339)
T ss_pred EEEEEEEEEEcCCCcEEEEEEEcCCCCCCccCCCCeEEEECCCC---ceeeeecCCCCCCCCEEEEEEEecCCCccHHHH
Confidence 3578899999999999999999773 57899999999999853 5899999999965 7999999987 5667777
Q ss_pred HHHhhhccCCCCCCCcccccccCCCCCCCCEEEEEcccCCCCCCCCCCCeEEEEEeCcCHHHHHHHHHHHHHhcc-----
Q 003558 675 RTVFSEVCRPPPNGISGLLRAEGHNNPDFPRVLIDGPYGAPAQDYKEYEVVLLVGLGIGATPMISIVKDIVNNMK----- 749 (811)
Q Consensus 675 ~~~~~~~~~~~~~G~sg~~~~~~~~~~~~~~v~idGPyG~~~~~~~~~~~vllIagGiGITP~lsil~~l~~~~~----- 749 (811)
.+.+ ++| +.+.|+||||.+..+....+++||||||+||||++||++++++...
T Consensus 179 ~~~l-------~~G---------------~~v~v~gP~G~~~~~~~~~~~ivlIagGtGiaP~~s~l~~~~~~~~~~~i~ 236 (339)
T PRK07609 179 FGAL-------KER---------------DILRIEGPLGTFFLREDSDKPIVLLASGTGFAPIKSIVEHLRAKGIQRPVT 236 (339)
T ss_pred HHhc-------cCC---------------CEEEEEcCceeEEecCCCCCCEEEEecCcChhHHHHHHHHHHhcCCCCcEE
Confidence 6543 233 7899999999987654466789999999999999999999987532
Q ss_pred ------cchhhHHHHHH-HhhhcCCCeE-EEEEcC--CCCCCCcccCccccCCHHHHHHhh
Q 003558 750 ------AIEEEEENDLE-NGRDTGVNTT-IIIIDN--NYEPFFFWTQKKGPIQDKKSILLL 800 (811)
Q Consensus 750 ------~~~~~~~~el~-~~~~~~~~~~-i~v~~~--~~~~~~~w~g~~G~i~~~~~~~~~ 800 (811)
+.+++++.+++ ++..+..+.. ++++++ +++. |.|++|++++.+.+.+.
T Consensus 237 l~~g~r~~~dl~~~e~l~~~~~~~~~~~~~~~~s~~~~~~~---~~g~~G~v~~~~~~~~~ 294 (339)
T PRK07609 237 LYWGARRPEDLYLSALAEQWAEELPNFRYVPVVSDALDDDA---WTGRTGFVHQAVLEDFP 294 (339)
T ss_pred EEEecCChHHhccHHHHHHHHHhCCCeEEEEEecCCCCCCC---ccCccCcHHHHHHhhcc
Confidence 22334445544 3334455543 334443 3444 99999999988766543
No 16
>cd06211 phenol_2-monooxygenase_like Phenol 2-monooxygenase (phenol hydroxylase) is a flavoprotein monooxygenase, able to use molecular oxygen as a substrate in the microbial degredation of phenol. This protein is encoded by a single gene and uses a tightly bound FAD cofactor in the NAD(P)H dependent conversion of phenol and O2 to catechol and H2O. This group is related to the NAD binding ferredoxin reductases.
Probab=99.84 E-value=6.7e-20 Score=192.79 Aligned_cols=172 Identities=17% Similarity=0.271 Sum_probs=130.6
Q ss_pred cceEEEEEEEecCCEEEEEEEcCCCc--ccCCCcEEEEEeccCCCCeeecCcccCCCC-CCeEEEEEEEc--CCccHhHH
Q 003558 601 KAVSIQKVAVYPGNVLALHMSKPDRF--RYKSGQYMFVNCAAVSPFEWHPFSITSAPD-DDYLSVHIRTL--GDWTRQLR 675 (811)
Q Consensus 601 ~~~~i~~v~~~~~~v~~l~l~~p~~~--~~~pGQyv~l~~p~~s~~e~HPFSIas~p~-~~~l~~~Ik~~--g~~T~~L~ 675 (811)
+.++|.+++.+++++..+++..|.+. .|+||||+.|++|... +.|||||+|.|. ++.++|+||.. |..|..|.
T Consensus 7 ~~~~v~~~~~~t~~~~~~~l~~~~~~~~~~~pGQ~v~l~~~~~~--~~r~ySi~s~~~~~~~l~l~i~~~~~G~~s~~l~ 84 (238)
T cd06211 7 FEGTVVEIEDLTPTIKGVRLKLDEPEEIEFQAGQYVNLQAPGYE--GTRAFSIASSPSDAGEIELHIRLVPGGIATTYVH 84 (238)
T ss_pred EeEEEEEEEecCCCEEEEEEEcCCCCcCccCCCCeEEEEcCCCC--CccccccCCCCCCCCEEEEEEEECCCCcchhhHh
Confidence 46789999999999999999987764 8999999999998643 679999999985 67899999998 77888886
Q ss_pred HHhhhccCCCCCCCcccccccCCCCCCCCEEEEEcccCCCCCCCCCCCeEEEEEeCcCHHHHHHHHHHHHHhccc-----
Q 003558 676 TVFSEVCRPPPNGISGLLRAEGHNNPDFPRVLIDGPYGAPAQDYKEYEVVLLVGLGIGATPMISIVKDIVNNMKA----- 750 (811)
Q Consensus 676 ~~~~~~~~~~~~G~sg~~~~~~~~~~~~~~v~idGPyG~~~~~~~~~~~vllIagGiGITP~lsil~~l~~~~~~----- 750 (811)
+.+ ++| ++|.|.||+|.+.......+++|+||||+||||++|++++++++...
T Consensus 85 ~~l-------~~G---------------~~v~i~gP~G~~~~~~~~~~~~v~iagG~GiaP~~~~l~~~~~~~~~~~v~l 142 (238)
T cd06211 85 KQL-------KEG---------------DELEISGPYGDFFVRDSDQRPIIFIAGGSGLSSPRSMILDLLERGDTRKITL 142 (238)
T ss_pred hcC-------CCC---------------CEEEEECCccceEecCCCCCCEEEEeCCcCHHHHHHHHHHHHhcCCCCcEEE
Confidence 433 233 78999999999875444457899999999999999999999875321
Q ss_pred ------chhh-HHHHHHHhhhcCCCe-EEEEEcCC--CCCCCcccCccccCCHHHHHHh
Q 003558 751 ------IEEE-EENDLENGRDTGVNT-TIIIIDNN--YEPFFFWTQKKGPIQDKKSILL 799 (811)
Q Consensus 751 ------~~~~-~~~el~~~~~~~~~~-~i~v~~~~--~~~~~~w~g~~G~i~~~~~~~~ 799 (811)
.+++ +.+++.++.+...+. .+++.+++ .+. |.|..|++++.+.+.+
T Consensus 143 ~~~~r~~~~~~~~~~l~~l~~~~~~~~~~~~~s~~~~~~~---~~~~~g~v~~~l~~~~ 198 (238)
T cd06211 143 FFGARTRAELYYLDEFEALEKDHPNFKYVPALSREPPESN---WKGFTGFVHDAAKKHF 198 (238)
T ss_pred EEecCChhhhccHHHHHHHHHhCCCeEEEEEECCCCCCcC---cccccCcHHHHHHHhc
Confidence 2222 345555555555553 33344432 334 9999999988655544
No 17
>cd06190 T4MO_e_transfer_like Toluene-4-monoxygenase electron transfer component of Pseudomonas mendocina hydroxylates toluene and forms p-cresol as part of a three component toluene-4-monoxygenase system. Electron transfer is from NADH to an NADH:ferredoxin oxidoreductase (TmoF in P. mendocina) to ferredoxin to an iron-containing oxygenase. TmoF is homologous to other mono- and dioxygenase systems within the ferredoxin reductase family.
Probab=99.84 E-value=5.7e-20 Score=192.42 Aligned_cols=172 Identities=16% Similarity=0.231 Sum_probs=127.2
Q ss_pred EEEEEecCCEEEEEEEcCCCcccCCCcEEEEEeccCCCCeeecCcccCCCCC-CeEEEEEEEc--CCccHhHHHHhhhcc
Q 003558 606 QKVAVYPGNVLALHMSKPDRFRYKSGQYMFVNCAAVSPFEWHPFSITSAPDD-DYLSVHIRTL--GDWTRQLRTVFSEVC 682 (811)
Q Consensus 606 ~~v~~~~~~v~~l~l~~p~~~~~~pGQyv~l~~p~~s~~e~HPFSIas~p~~-~~l~~~Ik~~--g~~T~~L~~~~~~~~ 682 (811)
++++.++++++.++|..+..+.|+||||++|++|..+ ..|||||+|.|.+ +.++|+||.. |.+|+.|.+.+
T Consensus 2 ~~~~~~t~~~~~~~l~~~~~~~~~pGQ~v~l~~~~~~--~~r~ySi~s~~~~~~~~~~~vk~~~~G~~s~~l~~~~---- 75 (232)
T cd06190 2 VDVRELTHDVAEFRFALDGPADFLPGQYALLALPGVE--GARAYSMANLANASGEWEFIIKRKPGGAASNALFDNL---- 75 (232)
T ss_pred CceEEcCCCEEEEEEEcCCccccCCCCEEEEECCCCC--cccCccCCcCCCCCCEEEEEEEEcCCCcchHHHhhcC----
Confidence 4577889999999999888889999999999998654 6799999999865 7899999987 77888887643
Q ss_pred CCCCCCCcccccccCCCCCCCCEEEEEcccCCCCCCCCCCCeEEEEEeCcCHHHHHHHHHHHHHhc--c-----------
Q 003558 683 RPPPNGISGLLRAEGHNNPDFPRVLIDGPYGAPAQDYKEYEVVLLVGLGIGATPMISIVKDIVNNM--K----------- 749 (811)
Q Consensus 683 ~~~~~G~sg~~~~~~~~~~~~~~v~idGPyG~~~~~~~~~~~vllIagGiGITP~lsil~~l~~~~--~----------- 749 (811)
++| ++|.|.||||.+.......+++||||||+||||++|+++++.... .
T Consensus 76 ---~~g---------------~~v~v~gP~G~~~~~~~~~~~illIagG~GiaP~~~~l~~~~~~~~~~~~~v~l~~~~r 137 (232)
T cd06190 76 ---EPG---------------DELELDGPYGLAYLRPDEDRDIVCIAGGSGLAPMLSILRGAARSPYLSDRPVDLFYGGR 137 (232)
T ss_pred ---CCC---------------CEEEEECCcccceecCCCCCcEEEEeeCcCHHHHHHHHHHHHhcccCCCCeEEEEEeec
Confidence 233 789999999998754445679999999999999999999998751 1
Q ss_pred cchhh-HHHHHHHhhhcCCCeEE-EEEcCCC-CCCCcccCccccCCHHHHHHhhc
Q 003558 750 AIEEE-EENDLENGRDTGVNTTI-IIIDNNY-EPFFFWTQKKGPIQDKKSILLLG 801 (811)
Q Consensus 750 ~~~~~-~~~el~~~~~~~~~~~i-~v~~~~~-~~~~~w~g~~G~i~~~~~~~~~~ 801 (811)
+.+++ +.+++.++...+.+..+ ++++++. .....|.+.+|++++.+.+.+..
T Consensus 138 ~~~~~~~~~el~~l~~~~~~~~~~~~~s~~~~~~~~~~~~~~g~v~~~l~~~~~~ 192 (232)
T cd06190 138 TPSDLCALDELSALVALGARLRVTPAVSDAGSGSAAGWDGPTGFVHEVVEATLGD 192 (232)
T ss_pred CHHHHhhHHHHHHHHHhCCCEEEEEEeCCCCCCcCCCccCCcCcHHHHHHhhccC
Confidence 11222 34555555555445433 3334332 21123899999999876655543
No 18
>cd06187 O2ase_reductase_like The oxygenase reductase FAD/NADH binding domain acts as part of the multi-component bacterial oxygenases which oxidize hydrocarbons using oxygen as the oxidant. Electron transfer is from NADH via FAD (in the oxygenase reductase) and an [2FE-2S] ferredoxin center (fused to the FAD/NADH domain and/or discrete) to the oxygenase. Dioxygenases add both atoms of oxygen to the substrate, while mono-oxygenases (aka mixed oxygenases) add one atom to the substrate and one atom to water. In dioxygenases, Class I enzymes are 2 component, containing a reductase with Rieske type [2Fe-2S] redox centers and an oxygenase. Class II are 3 component, having discrete flavin and ferredoxin proteins and an oxygenase. Class III have 2 [2Fe-2S] centers, one fused to the flavin domain and the other separate.
Probab=99.84 E-value=5.6e-20 Score=191.27 Aligned_cols=169 Identities=19% Similarity=0.336 Sum_probs=128.9
Q ss_pred EEEEEEecCCEEEEEEEcCCCcccCCCcEEEEEeccCCCCeeecCcccCCCCC-CeEEEEEEEc--CCccHhHHHHhhhc
Q 003558 605 IQKVAVYPGNVLALHMSKPDRFRYKSGQYMFVNCAAVSPFEWHPFSITSAPDD-DYLSVHIRTL--GDWTRQLRTVFSEV 681 (811)
Q Consensus 605 i~~v~~~~~~v~~l~l~~p~~~~~~pGQyv~l~~p~~s~~e~HPFSIas~p~~-~~l~~~Ik~~--g~~T~~L~~~~~~~ 681 (811)
|.+++.++++++.+++..|..+.|+||||+.|.+|..+. .+|||||+|.|.+ +.++|+||.. |.+|+.|.+.+
T Consensus 1 v~~~~~~~~~~~~~~l~~~~~~~~~pGq~i~l~~~~~~~-~~r~ysi~s~~~~~~~~~~~i~~~~~G~~s~~l~~~l--- 76 (224)
T cd06187 1 VVSVERLTHDIAVVRLQLDQPLPFWAGQYVNVTVPGRPR-TWRAYSPANPPNEDGEIEFHVRAVPGGRVSNALHDEL--- 76 (224)
T ss_pred CeeeeecCCCEEEEEEEeCCCCCcCCCceEEEEcCCCCC-cceeccccCCCCCCCEEEEEEEeCCCCcchHHHhhcC---
Confidence 356788899999999998888899999999999986532 6899999999865 7899999998 77888887633
Q ss_pred cCCCCCCCcccccccCCCCCCCCEEEEEcccCCCCCCCCCCCeEEEEEeCcCHHHHHHHHHHHHHhccc-----------
Q 003558 682 CRPPPNGISGLLRAEGHNNPDFPRVLIDGPYGAPAQDYKEYEVVLLVGLGIGATPMISIVKDIVNNMKA----------- 750 (811)
Q Consensus 682 ~~~~~~G~sg~~~~~~~~~~~~~~v~idGPyG~~~~~~~~~~~vllIagGiGITP~lsil~~l~~~~~~----------- 750 (811)
++| +.|.|.||||.+......++++||||||+||||++|+++++..+...
T Consensus 77 ----~~G---------------~~v~i~gP~G~~~~~~~~~~~~lliagG~GI~p~~sll~~~~~~~~~~~v~l~~~~~~ 137 (224)
T cd06187 77 ----KVG---------------DRVRLSGPYGTFYLRRDHDRPVLCIAGGTGLAPLRAIVEDALRRGEPRPVHLFFGART 137 (224)
T ss_pred ----ccC---------------CEEEEeCCccceEecCCCCCCEEEEecCcCHHHHHHHHHHHHhcCCCCCEEEEEecCC
Confidence 233 88999999999875444478899999999999999999999875421
Q ss_pred chhh-HHHHHHHhhhcCCCeEE-EEEcCCCCCCCcccCccccCCHHHHHHh
Q 003558 751 IEEE-EENDLENGRDTGVNTTI-IIIDNNYEPFFFWTQKKGPIQDKKSILL 799 (811)
Q Consensus 751 ~~~~-~~~el~~~~~~~~~~~i-~v~~~~~~~~~~w~g~~G~i~~~~~~~~ 799 (811)
.++. +.+++..+..+..+..+ ++++++.+. |.|.+|++++.+.+..
T Consensus 138 ~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~---~~~~~g~~~~~~~~~~ 185 (224)
T cd06187 138 ERDLYDLEGLLALAARHPWLRVVPVVSHEEGA---WTGRRGLVTDVVGRDG 185 (224)
T ss_pred hhhhcChHHHHHHHHhCCCeEEEEEeCCCCCc---cCCCcccHHHHHHHhc
Confidence 1222 34555555555555433 344554454 8899999988776544
No 19
>cd06215 FNR_iron_sulfur_binding_1 Iron-sulfur binding ferredoxin reductase (FNR) proteins combine the FAD and NAD(P) binding regions of FNR with an iron-sulfur binding cluster domain. Ferredoxin-NADP+ (oxido)reductase is an FAD-containing enzyme that catalyzes the reversible electron transfer between NADP(H) and electron carrier proteins such as ferredoxin and flavodoxin. Isoforms of these flavoproteins (i.e. having a non-covalently bound FAD as a prosthetic group) are present in chloroplasts, mitochondria, and bacteria in which they participate in a wide variety of redox metabolic pathways. The C-terminal portion of the FAD/NAD binding domain contains most of the NADP(H) binding residues and the N-terminal sub-domain interacts non-covalently with the isoalloxazine rings of the flavin molecule which lies largely in a large gap betweed the two domains. In this ferredoxin like sub-group, the FAD/NAD sub-domains is typically fused to a C-terminal iron-sulfur binding domain. Iron-sulfur pr
Probab=99.83 E-value=1.1e-19 Score=189.92 Aligned_cols=173 Identities=21% Similarity=0.347 Sum_probs=128.4
Q ss_pred eEEEEEEEecCCEEEEEEEcCCC--cccCCCcEEEEEeccCCCCeeecCcccCCCCC-CeEEEEEEEc--CCccHhHHHH
Q 003558 603 VSIQKVAVYPGNVLALHMSKPDR--FRYKSGQYMFVNCAAVSPFEWHPFSITSAPDD-DYLSVHIRTL--GDWTRQLRTV 677 (811)
Q Consensus 603 ~~i~~v~~~~~~v~~l~l~~p~~--~~~~pGQyv~l~~p~~s~~e~HPFSIas~p~~-~~l~~~Ik~~--g~~T~~L~~~ 677 (811)
++|++++.+++++..++++.|.. +.|+||||+.|.+|..+...+|||||+|.|.+ +.++|+||.. |.+|+.|.+.
T Consensus 1 ~~v~~~~~~t~~~~~~~l~~~~~~~~~~~pGQ~v~l~~~~~~~~~~R~ySi~s~~~~~~~l~~~vk~~~~G~~s~~l~~~ 80 (231)
T cd06215 1 LRCVKIIQETPDVKTFRFAAPDGSLFAYKPGQFLTLELEIDGETVYRAYTLSSSPSRPDSLSITVKRVPGGLVSNWLHDN 80 (231)
T ss_pred CeEEEEEEcCCCeEEEEEECCCCCcCCcCCCCeEEEEEecCCCeEEEeeecccCCCCCCcEEEEEEEcCCCcchHHHHhc
Confidence 36788999999999999999876 78999999999998766667899999999865 5699999998 7788877643
Q ss_pred hhhccCCCCCCCcccccccCCCCCCCCEEEEEcccCCCCCCCCCCCeEEEEEeCcCHHHHHHHHHHHHHhccc-------
Q 003558 678 FSEVCRPPPNGISGLLRAEGHNNPDFPRVLIDGPYGAPAQDYKEYEVVLLVGLGIGATPMISIVKDIVNNMKA------- 750 (811)
Q Consensus 678 ~~~~~~~~~~G~sg~~~~~~~~~~~~~~v~idGPyG~~~~~~~~~~~vllIagGiGITP~lsil~~l~~~~~~------- 750 (811)
+ ++| +.+.|.||||.+.......+++||||||+||||+++++++++.....
T Consensus 81 ~-------~~G---------------~~v~i~gP~G~f~~~~~~~~~~vlIagG~Giap~~~~l~~~~~~~~~~~v~l~~ 138 (231)
T cd06215 81 L-------KVG---------------DELWASGPAGEFTLIDHPADKLLLLSAGSGITPMMSMARWLLDTRPDADIVFIH 138 (231)
T ss_pred C-------CCC---------------CEEEEEcCcceeEeCCCCCCcEEEEecCcCcchHHHHHHHHHhcCCCCcEEEEE
Confidence 3 233 78999999999875434468999999999999999999999865321
Q ss_pred ----chhh-HHHHHHHhhhcCCCeE-EEEEcCCCCCCCcccCccccCCHHHHHHh
Q 003558 751 ----IEEE-EENDLENGRDTGVNTT-IIIIDNNYEPFFFWTQKKGPIQDKKSILL 799 (811)
Q Consensus 751 ----~~~~-~~~el~~~~~~~~~~~-i~v~~~~~~~~~~w~g~~G~i~~~~~~~~ 799 (811)
.++. +.+++.++.++..+.. +++.+.+++. .|.+..|+++++..+..
T Consensus 139 ~~r~~~~~~~~~~l~~l~~~~~~~~~~~~~~~~~~~--~~~~~~g~~~~~~l~~~ 191 (231)
T cd06215 139 SARSPADIIFADELEELARRHPNFRLHLILEQPAPG--AWGGYRGRLNAELLALL 191 (231)
T ss_pred ecCChhhhhHHHHHHHHHHHCCCeEEEEEEccCCCC--cccccCCcCCHHHHHHh
Confidence 2222 3345555444444432 2333333321 27899999998655443
No 20
>cd06195 FNR1 Ferredoxin-NADP+ (oxido)reductase is an FAD-containing enzyme that catalyzes the reversible electron transfer between NADP(H) and electron carrier proteins such as ferredoxin and flavodoxin. Isoforms of these flavoproteins (i.e. having a non-covalently bound FAD as a prosthetic group) are present in chloroplasts, mitochondria, and bacteria in which they participate in a wide variety of redox metabolic pathways. The C-terminal domain contains most of the NADP(H) binding residues and the N-terminal domain interacts non-covalently with the isoalloxazine rings of the flavin molecule which lies largely in a large gap betweed the two domains. Ferredoxin-NADP+ reductase first accepts one electron from reduced ferredoxin to form a flavin semiquinone intermediate. The enzyme then accepts a second electron to form FADH2 which then transfers two electrons and a proton to NADP+ to form NADPH.
Probab=99.83 E-value=8.3e-20 Score=192.39 Aligned_cols=166 Identities=20% Similarity=0.302 Sum_probs=126.6
Q ss_pred EEEEEEEecCCEEEEEEEcCCCcccCCCcEEEEEeccC-CCCeeecCcccCCCCCCeEEEEEEEc--CCccHhHHHHhhh
Q 003558 604 SIQKVAVYPGNVLALHMSKPDRFRYKSGQYMFVNCAAV-SPFEWHPFSITSAPDDDYLSVHIRTL--GDWTRQLRTVFSE 680 (811)
Q Consensus 604 ~i~~v~~~~~~v~~l~l~~p~~~~~~pGQyv~l~~p~~-s~~e~HPFSIas~p~~~~l~~~Ik~~--g~~T~~L~~~~~~ 680 (811)
+|.+++.++++++++++..|..+.|+||||+.|+++.. +...+|||||+|.|.++.++|+||.. |.+|+.|.+ +
T Consensus 1 ~v~~~~~~t~~~~~~~l~~~~~~~~~pGQ~v~l~~~~~~~~~~~R~ySi~s~~~~~~i~~~i~~~~~G~~s~~l~~-l-- 77 (241)
T cd06195 1 TVLKRRDWTDDLFSFRVTRDIPFRFQAGQFTKLGLPNDDGKLVRRAYSIASAPYEENLEFYIILVPDGPLTPRLFK-L-- 77 (241)
T ss_pred CeEEEEEcCCCEEEEEEcCCCCCccCCCCeEEEeccCCCCCeeeecccccCCCCCCeEEEEEEEecCCCCchHHhc-C--
Confidence 36788899999999999988778899999999999876 66789999999999889999999976 788887753 2
Q ss_pred ccCCCCCCCcccccccCCCCCCCCEEEEE-cccCCCCCCCC-CCCeEEEEEeCcCHHHHHHHHHHHHHhcc---------
Q 003558 681 VCRPPPNGISGLLRAEGHNNPDFPRVLID-GPYGAPAQDYK-EYEVVLLVGLGIGATPMISIVKDIVNNMK--------- 749 (811)
Q Consensus 681 ~~~~~~~G~sg~~~~~~~~~~~~~~v~id-GPyG~~~~~~~-~~~~vllIagGiGITP~lsil~~l~~~~~--------- 749 (811)
++| +.+.+. ||+|.+..+.. ..+++||||||+||||+++|++++.....
T Consensus 78 -----~~G---------------d~v~v~~gP~G~f~~~~~~~~~~~vlIagGtGiaP~~~~l~~~~~~~~~~~v~l~~~ 137 (241)
T cd06195 78 -----KPG---------------DTIYVGKKPTGFLTLDEVPPGKRLWLLATGTGIAPFLSMLRDLEIWERFDKIVLVHG 137 (241)
T ss_pred -----CCC---------------CEEEECcCCCCceeecCCCCCceEEEEeeccchhhHHHHHHHHHhhCCCCcEEEEEc
Confidence 233 889999 99999865443 46899999999999999999999985422
Q ss_pred --cchhh-HHHHHHHhhhc-CCCeE-EEEEcCCCCCCCcccCccccCCHHHH
Q 003558 750 --AIEEE-EENDLENGRDT-GVNTT-IIIIDNNYEPFFFWTQKKGPIQDKKS 796 (811)
Q Consensus 750 --~~~~~-~~~el~~~~~~-~~~~~-i~v~~~~~~~~~~w~g~~G~i~~~~~ 796 (811)
+.+++ +.+++.++..+ ..+.. +++.+++++. | |..|++++.+.
T Consensus 138 ~r~~~d~~~~~el~~l~~~~~~~~~~~~~~s~~~~~---~-~~~g~v~~~l~ 185 (241)
T cd06195 138 VRYAEELAYQDEIEALAKQYNGKFRYVPIVSREKEN---G-ALTGRIPDLIE 185 (241)
T ss_pred cCCHHHhhhHHHHHHHHhhcCCCEEEEEEECcCCcc---C-CCceEhHHhhh
Confidence 22223 34555555444 33433 3345555555 6 78899987543
No 21
>cd06184 flavohem_like_fad_nad_binding FAD_NAD(P)H binding domain of flavohemoglobin. Flavohemoglobins have a globin domain containing a B-type heme fused with a ferredoxin reductase-like FAD/NAD-binding domain. Flavohemoglobins detoxify nitric oxide (NO) via an NO dioxygenase reaction. The hemoglobin domain adopts a globin fold with an embedded heme molecule. Flavohemoglobins also have a C-terminal reductase domain with bindiing sites for FAD and NAD(P)H. This domain catalyzes the conversion of NO + O2 + NAD(P)H to NO3- + NAD(P)+. Instead of the oxygen transport function of hemoglobins, flavohemoglobins seem to act in NO dioxygenation and NO signalling.
Probab=99.83 E-value=1.8e-19 Score=190.52 Aligned_cols=176 Identities=16% Similarity=0.211 Sum_probs=130.8
Q ss_pred ccceEEEEEEEecCCEEEEEEEcCCC---cccCCCcEEEEEeccCC--CCeeecCcccCCCCCCeEEEEEEEc--CCccH
Q 003558 600 IKAVSIQKVAVYPGNVLALHMSKPDR---FRYKSGQYMFVNCAAVS--PFEWHPFSITSAPDDDYLSVHIRTL--GDWTR 672 (811)
Q Consensus 600 ~~~~~i~~v~~~~~~v~~l~l~~p~~---~~~~pGQyv~l~~p~~s--~~e~HPFSIas~p~~~~l~~~Ik~~--g~~T~ 672 (811)
++.++|.+++.+++++.+|+|..|.. +.|+||||+.|.++..+ ...+|||||+|.|.++.++|+||.. |..|+
T Consensus 6 ~~~~~v~~~~~~s~~~~~l~l~~~~~~~~~~~~pGQ~v~l~~~~~~~~~~~~R~ySi~s~~~~~~l~~~ik~~~~G~~s~ 85 (247)
T cd06184 6 FRPFVVARKVAESEDITSFYLEPADGGPLPPFLPGQYLSVRVKLPGLGYRQIRQYSLSDAPNGDYYRISVKREPGGLVSN 85 (247)
T ss_pred cEEEEEEEEEEcCCCeEEEEEEeCCCCcCCCCCCCCEEEEEEecCCCCCceeEEeEeccCCCCCeEEEEEEEcCCCcchH
Confidence 46788999999999999999998753 68999999999997543 4689999999999878999999998 78888
Q ss_pred hHHHHhhhccCCCCCCCcccccccCCCCCCCCEEEEEcccCCCCCCCCCCCeEEEEEeCcCHHHHHHHHHHHHHhcc---
Q 003558 673 QLRTVFSEVCRPPPNGISGLLRAEGHNNPDFPRVLIDGPYGAPAQDYKEYEVVLLVGLGIGATPMISIVKDIVNNMK--- 749 (811)
Q Consensus 673 ~L~~~~~~~~~~~~~G~sg~~~~~~~~~~~~~~v~idGPyG~~~~~~~~~~~vllIagGiGITP~lsil~~l~~~~~--- 749 (811)
.|.+.+ ++| +++.|.||||.+..+...++++||||||+||||++++++++.++..
T Consensus 86 ~l~~~~-------~~G---------------d~v~i~gP~G~~~~~~~~~~~llliagGtGiaP~~~~l~~~~~~~~~~~ 143 (247)
T cd06184 86 YLHDNV-------KVG---------------DVLEVSAPAGDFVLDEASDRPLVLISAGVGITPMLSMLEALAAEGPGRP 143 (247)
T ss_pred HHHhcC-------CCC---------------CEEEEEcCCCceECCCCCCCcEEEEeccccHhHHHHHHHHHHhcCCCCc
Confidence 876532 233 8899999999987644467899999999999999999999987521
Q ss_pred --------cchhh-HHHHHHHhhhcCCCeEE-EEEcCCCCC-CCcccCccccCCHHHHH
Q 003558 750 --------AIEEE-EENDLENGRDTGVNTTI-IIIDNNYEP-FFFWTQKKGPIQDKKSI 797 (811)
Q Consensus 750 --------~~~~~-~~~el~~~~~~~~~~~i-~v~~~~~~~-~~~w~g~~G~i~~~~~~ 797 (811)
+.++. +.+++.++...+.+..+ .+++++.+. ...|.+..|+++.+...
T Consensus 144 i~l~~~~r~~~~~~~~~~l~~l~~~~~~~~~~~~~s~~~~~~~~~~~~~~g~~~~~~l~ 202 (247)
T cd06184 144 VTFIHAARNSAVHAFRDELEELAARLPNLKLHVFYSEPEAGDREEDYDHAGRIDLALLR 202 (247)
T ss_pred EEEEEEcCchhhHHHHHHHHHHHhhCCCeEEEEEECCCCcccccccccccCccCHHHHh
Confidence 12222 34555555555455433 344443332 00136778999876543
No 22
>cd06213 oxygenase_e_transfer_subunit The oxygenase reductase FAD/NADH binding domain acts as part of the multi-component bacterial oxygenases which oxidize hydrocarbons. Electron transfer is from NADH via FAD (in the oxygenase reductase) and an [2FE-2S] ferredoxin center (fused to the FAD/NADH domain and/or discrete) to the oxygenase. Dioxygenases add both atoms of oxygen to the substrate while mono-oxygenases add one atom to the substrate and one atom to water. In dioxygenases, Class I enzymes are 2 component, containing a reductase with Rieske type [2Fe-2S] redox centers and an oxygenase. Class II are 3 component, having discrete flavin and ferredoxin proteins and an oxygenase. Class III have 2 [2Fe-2S] centers, one fused to the flavin domain and the other separate.
Probab=99.83 E-value=1.7e-19 Score=188.23 Aligned_cols=170 Identities=19% Similarity=0.309 Sum_probs=128.1
Q ss_pred ceEEEEEEEecCCEEEEEEEcCCCcccCCCcEEEEEeccCCCCeeecCcccCCCC-CCeEEEEEEEc--CCccHhHHHHh
Q 003558 602 AVSIQKVAVYPGNVLALHMSKPDRFRYKSGQYMFVNCAAVSPFEWHPFSITSAPD-DDYLSVHIRTL--GDWTRQLRTVF 678 (811)
Q Consensus 602 ~~~i~~v~~~~~~v~~l~l~~p~~~~~~pGQyv~l~~p~~s~~e~HPFSIas~p~-~~~l~~~Ik~~--g~~T~~L~~~~ 678 (811)
.++|.+++.++++++++++..|..+.|+||||+.|.++... .+|||||+|+|. ++.++|+||.. |.+|+.|.+.+
T Consensus 2 ~~~v~~~~~~t~~~~~~~l~~~~~~~~~pGQ~~~l~~~~~~--~~r~ysi~s~~~~~~~l~~~vk~~~~G~~s~~l~~~l 79 (227)
T cd06213 2 RGTIVAQERLTHDIVRLTVQLDRPIAYKAGQYAELTLPGLP--AARSYSFANAPQGDGQLSFHIRKVPGGAFSGWLFGAD 79 (227)
T ss_pred eEEEEEEeecCCCEEEEEEecCCCCCcCCCCEEEEEeCCCC--cccccccCCCCCCCCEEEEEEEECCCCcchHHHHhcC
Confidence 46788999999999999999877788999999999998643 689999999986 47899999987 77888886543
Q ss_pred hhccCCCCCCCcccccccCCCCCCCCEEEEEcccCCCCCCCCCCCeEEEEEeCcCHHHHHHHHHHHHHhccc--------
Q 003558 679 SEVCRPPPNGISGLLRAEGHNNPDFPRVLIDGPYGAPAQDYKEYEVVLLVGLGIGATPMISIVKDIVNNMKA-------- 750 (811)
Q Consensus 679 ~~~~~~~~~G~sg~~~~~~~~~~~~~~v~idGPyG~~~~~~~~~~~vllIagGiGITP~lsil~~l~~~~~~-------- 750 (811)
++| ++|.|.||||.+... ...+++||||||+||||++++++++.++...
T Consensus 80 -------~~G---------------~~v~i~gP~G~~~~~-~~~~~~lliagG~GiaP~~~~~~~~~~~~~~~~i~l~~~ 136 (227)
T cd06213 80 -------RTG---------------ERLTVRGPFGDFWLR-PGDAPILCIAGGSGLAPILAILEQARAAGTKRDVTLLFG 136 (227)
T ss_pred -------CCC---------------CEEEEeCCCcceEeC-CCCCcEEEEecccchhHHHHHHHHHHhcCCCCcEEEEEe
Confidence 233 789999999998753 3457899999999999999999999876432
Q ss_pred ---chhh-HHHHHHHhhhcC-CCeE-EEEEcCC--CCCCCcccCccccCCHHHHHHh
Q 003558 751 ---IEEE-EENDLENGRDTG-VNTT-IIIIDNN--YEPFFFWTQKKGPIQDKKSILL 799 (811)
Q Consensus 751 ---~~~~-~~~el~~~~~~~-~~~~-i~v~~~~--~~~~~~w~g~~G~i~~~~~~~~ 799 (811)
.+++ +.+++.++..+. .+.. +.+.+++ +.. |.|..|++++.+.+.+
T Consensus 137 ~r~~~~~~~~~~l~~l~~~~~~~~~~~~~~s~~~~~~~---~~g~~g~v~~~l~~~~ 190 (227)
T cd06213 137 ARTQRDLYALDEIAAIAARWRGRFRFIPVLSEEPADSS---WKGARGLVTEHIAEVL 190 (227)
T ss_pred eCCHHHhccHHHHHHHHHhccCCeEEEEEecCCCCCCC---ccCCcccHHHHHHhhc
Confidence 1222 345555554433 3332 3334332 334 8899999987765544
No 23
>cd06188 NADH_quinone_reductase Na+-translocating NADH:quinone oxidoreductase (Na+-NQR) FAD/NADH binding domain. (Na+-NQR) provides a means of storing redox reaction energy via the transmembrane translocation of Na2+ ions. The C-terminal domain resembles ferredoxin:NADP+ oxidoreductase, and has NADH and FAD binding sites. (Na+-NQR) is distinct from H+-translocating NADH:quinone oxidoreductases and noncoupled NADH:quinone oxidoreductases. The NAD(P) binding domain of ferredoxin reductase-like proteins catalyze electron transfer between an NAD(P)-binding domain of the alpha/beta class and a discrete (usually N-terminal) domain which vary in orientation with respect to the NAD(P) binding domain. The N-terminal domain of this group typically contains an iron-sulfur cluster binding domain.
Probab=99.83 E-value=1.1e-19 Score=196.06 Aligned_cols=172 Identities=16% Similarity=0.259 Sum_probs=129.5
Q ss_pred cceEEEEEEEecCCEEEEEEEcCCC--cccCCCcEEEEEeccC-----------------------------CCCeeecC
Q 003558 601 KAVSIQKVAVYPGNVLALHMSKPDR--FRYKSGQYMFVNCAAV-----------------------------SPFEWHPF 649 (811)
Q Consensus 601 ~~~~i~~v~~~~~~v~~l~l~~p~~--~~~~pGQyv~l~~p~~-----------------------------s~~e~HPF 649 (811)
..++|.+++.+++++.++++..|.+ +.|+||||+.|.+|.. +....|||
T Consensus 10 ~~~~v~~~~~~~~d~~~l~l~~~~~~~~~~~pGQ~v~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~R~y 89 (283)
T cd06188 10 WECTVISNDNVATFIKELVLKLPSGEEIAFKAGGYIQIEIPAYEIAYADFDVAEKYRADWDKFGLWQLVFKHDEPVSRAY 89 (283)
T ss_pred EEEEEEEcccccchhhheEEecCCCceeeecCCceEEEEcCCccccccccccchhhhhHHhhhcccccccccCCcccccc
Confidence 4678999999999999999998875 7899999999999853 12245999
Q ss_pred cccCCCC-CCeEEEEEEE-----------cCCccHhHHHHhhhccCCCCCCCcccccccCCCCCCCCEEEEEcccCCCCC
Q 003558 650 SITSAPD-DDYLSVHIRT-----------LGDWTRQLRTVFSEVCRPPPNGISGLLRAEGHNNPDFPRVLIDGPYGAPAQ 717 (811)
Q Consensus 650 SIas~p~-~~~l~~~Ik~-----------~g~~T~~L~~~~~~~~~~~~~G~sg~~~~~~~~~~~~~~v~idGPyG~~~~ 717 (811)
||+|+|. ++.++|+||. .|..|+.|.+ + ++| ++|.|.||+|.+..
T Consensus 90 Sias~p~~~~~l~l~vk~~~~~~~~~~~~~G~~S~~L~~-l-------~~G---------------d~v~i~gP~G~f~l 146 (283)
T cd06188 90 SLANYPAEEGELKLNVRIATPPPGNSDIPPGIGSSYIFN-L-------KPG---------------DKVTASGPFGEFFI 146 (283)
T ss_pred CcCCCCCCCCeEEEEEEEeccCCccCCCCCceehhHHhc-C-------CCC---------------CEEEEECccccccc
Confidence 9999996 6789999997 4556777754 2 233 89999999999876
Q ss_pred CCCCCCeEEEEEeCcCHHHHHHHHHHHHHhcc------------cchhh-HHHHHHHhhhcCCCeEEE-EEcCCC--CCC
Q 003558 718 DYKEYEVVLLVGLGIGATPMISIVKDIVNNMK------------AIEEE-EENDLENGRDTGVNTTII-IIDNNY--EPF 781 (811)
Q Consensus 718 ~~~~~~~vllIagGiGITP~lsil~~l~~~~~------------~~~~~-~~~el~~~~~~~~~~~i~-v~~~~~--~~~ 781 (811)
+ ...+++||||||+||||++||+++++.... +.+++ +.+++.++...+.+..++ +++++. +.
T Consensus 147 ~-~~~~~~vlIAgGtGItP~~s~l~~~~~~~~~~~~v~l~~g~r~~~d~~~~~el~~l~~~~~~~~~~~~~s~~~~~~~- 224 (283)
T cd06188 147 K-DTDREMVFIGGGAGMAPLRSHIFHLLKTLKSKRKISFWYGARSLKELFYQEEFEALEKEFPNFKYHPVLSEPQPEDN- 224 (283)
T ss_pred c-CCCCcEEEEEecccHhHHHHHHHHHHhcCCCCceEEEEEecCCHHHhhHHHHHHHHHHHCCCeEEEEEECCCCccCC-
Confidence 4 356789999999999999999999876432 12223 445665655566664443 334433 44
Q ss_pred CcccCccccCCHHHHHHh
Q 003558 782 FFWTQKKGPIQDKKSILL 799 (811)
Q Consensus 782 ~~w~g~~G~i~~~~~~~~ 799 (811)
|.|.+|+|++...+.+
T Consensus 225 --~~~~~G~v~~~~~~~~ 240 (283)
T cd06188 225 --WDGYTGFIHQVLLENY 240 (283)
T ss_pred --CCCcceeecHHHHHHH
Confidence 8899999998876654
No 24
>cd06214 PA_degradation_oxidoreductase_like NAD(P) binding domain of ferredoxin reductase like phenylacetic acid (PA) degradation oxidoreductase. PA oxidoreductases of E. coli hydroxylate PA-CoA in the second step of PA degradation. Members of this group typically fuse a ferredoxin reductase-like domain with an iron-sulfur binding cluster domain. Ferredoxins catalyze electron transfer between an NAD(P)-binding domain of the alpha/beta class and a discrete (usually N-terminal) domain which vary in orientation with respect to the NAD(P) binding domain. The N-terminal portion may contain a flavin prosthetic group, as in flavoenzymes, or use flavin as a substrate. Ferredoxin-NADP+ (oxido)reductase is an FAD-containing enzyme that catalyzes the reversible electron transfer between NADP(H) and electron carrier proteins such as ferredoxin and flavodoxin. Isoforms of these flavoproteins (i.e. having a non-covalently bound FAD as a prosthetic group) are present in chloroplasts, mitochondria, and
Probab=99.82 E-value=5.3e-19 Score=186.09 Aligned_cols=172 Identities=17% Similarity=0.289 Sum_probs=130.5
Q ss_pred cceEEEEEEEecCCEEEEEEEcCCC----cccCCCcEEEEEeccCCCCeeecCcccCCCCCCeEEEEEEEc--CCccHhH
Q 003558 601 KAVSIQKVAVYPGNVLALHMSKPDR----FRYKSGQYMFVNCAAVSPFEWHPFSITSAPDDDYLSVHIRTL--GDWTRQL 674 (811)
Q Consensus 601 ~~~~i~~v~~~~~~v~~l~l~~p~~----~~~~pGQyv~l~~p~~s~~e~HPFSIas~p~~~~l~~~Ik~~--g~~T~~L 674 (811)
+.++|.+++.+++++.+++++.|.+ +.|+||||+.|.+|..+...+|||||+|.|+++.++|+|+.. |..|..|
T Consensus 2 ~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~GQ~v~l~~~~~g~~~~r~ysi~s~~~~~~l~~~i~~~~~G~~s~~l 81 (241)
T cd06214 2 HPLTVAEVVRETADAVSITFDVPEELRDAFRYRPGQFLTLRVPIDGEEVRRSYSICSSPGDDELRITVKRVPGGRFSNWA 81 (241)
T ss_pred ceEEEEEEEecCCCeEEEEEecCcccCCCCCcCCCCeEEEEeecCCCeeeeeeeecCCCCCCcEEEEEEEcCCCccchhH
Confidence 4678999999999999999998765 579999999999996566688999999999877999999998 5567777
Q ss_pred HHHhhhccCCCCCCCcccccccCCCCCCCCEEEEEcccCCCCCCCC-CCCeEEEEEeCcCHHHHHHHHHHHHHhc-----
Q 003558 675 RTVFSEVCRPPPNGISGLLRAEGHNNPDFPRVLIDGPYGAPAQDYK-EYEVVLLVGLGIGATPMISIVKDIVNNM----- 748 (811)
Q Consensus 675 ~~~~~~~~~~~~~G~sg~~~~~~~~~~~~~~v~idGPyG~~~~~~~-~~~~vllIagGiGITP~lsil~~l~~~~----- 748 (811)
.+.+ ++| +.+.|.||+|.+..... .++++||||||+||||++++++++....
T Consensus 82 ~~~~-------~~G---------------~~v~i~gP~G~~~~~~~~~~~~~llia~GtGiap~~~~~~~~~~~~~~~~v 139 (241)
T cd06214 82 NDEL-------KAG---------------DTLEVMPPAGRFTLPPLPGARHYVLFAAGSGITPVLSILKTALAREPASRV 139 (241)
T ss_pred Hhcc-------CCC---------------CEEEEeCCccccccCCCCCCCcEEEEecccChhhHHHHHHHHHhcCCCCcE
Confidence 5432 233 78999999999875444 5789999999999999999999988763
Q ss_pred ------ccchhh-HHHHHHHhhhcCC-Ce-EEEEEcCCCCCCCcccCccccCCHHHHH
Q 003558 749 ------KAIEEE-EENDLENGRDTGV-NT-TIIIIDNNYEPFFFWTQKKGPIQDKKSI 797 (811)
Q Consensus 749 ------~~~~~~-~~~el~~~~~~~~-~~-~i~v~~~~~~~~~~w~g~~G~i~~~~~~ 797 (811)
++..+. +.+++.++.+... +. ..+++++++.. |.+..|++++....
T Consensus 140 ~l~~~~r~~~~~~~~~~l~~l~~~~~~~~~~~~~~~~~~~~---~~~~~g~~~~~~~~ 194 (241)
T cd06214 140 TLVYGNRTEASVIFREELADLKARYPDRLTVIHVLSREQGD---PDLLRGRLDAAKLN 194 (241)
T ss_pred EEEEEeCCHHHhhHHHHHHHHHHhCcCceEEEEEecCCCCC---cccccCccCHHHHH
Confidence 122222 3455555544444 33 23345555555 88889999876543
No 25
>PRK11872 antC anthranilate dioxygenase reductase; Provisional
Probab=99.82 E-value=2.6e-19 Score=198.18 Aligned_cols=171 Identities=17% Similarity=0.285 Sum_probs=130.2
Q ss_pred ccceEEEEEEEecCCEEEEEEEcC---CCcccCCCcEEEEEeccCCCCeeecCcccCCCC-CCeEEEEEEEcC--CccHh
Q 003558 600 IKAVSIQKVAVYPGNVLALHMSKP---DRFRYKSGQYMFVNCAAVSPFEWHPFSITSAPD-DDYLSVHIRTLG--DWTRQ 673 (811)
Q Consensus 600 ~~~~~i~~v~~~~~~v~~l~l~~p---~~~~~~pGQyv~l~~p~~s~~e~HPFSIas~p~-~~~l~~~Ik~~g--~~T~~ 673 (811)
...++|++++.+++++..++|..+ +.+.|+||||+.|.+|... .+|||||+|.|. ++.++|+||..+ ..|..
T Consensus 106 ~~~~~V~~i~~~s~di~~l~l~~~~~~~~~~~~pGQ~v~l~~~~~~--~~R~ySias~p~~~~~l~~~ik~~~~G~~s~~ 183 (340)
T PRK11872 106 KISGVVTAVELVSETTAILHLDASAHGRQLDFLPGQYARLQIPGTD--DWRSYSFANRPNATNQLQFLIRLLPDGVMSNY 183 (340)
T ss_pred eeeEEEEEEEecCCCeEEEEEEcCCCCCccCcCCCCEEEEEeCCCC--ceeecccCCCCCCCCeEEEEEEECCCCcchhh
Confidence 346889999999999999999876 4678999999999998543 589999999985 578999999964 35677
Q ss_pred HHHHhhhccCCCCCCCcccccccCCCCCCCCEEEEEcccCCCCCCCCCCCeEEEEEeCcCHHHHHHHHHHHHHhcc----
Q 003558 674 LRTVFSEVCRPPPNGISGLLRAEGHNNPDFPRVLIDGPYGAPAQDYKEYEVVLLVGLGIGATPMISIVKDIVNNMK---- 749 (811)
Q Consensus 674 L~~~~~~~~~~~~~G~sg~~~~~~~~~~~~~~v~idGPyG~~~~~~~~~~~vllIagGiGITP~lsil~~l~~~~~---- 749 (811)
|.+.+ ++| +.|.|+||||.+..+ ...+++||||||+||||++|+++++++...
T Consensus 184 L~~~l-------~~G---------------~~v~i~gP~G~f~l~-~~~~~~vliagGtGiaP~~s~l~~~~~~~~~~~v 240 (340)
T PRK11872 184 LRERC-------QVG---------------DEILFEAPLGAFYLR-EVERPLVFVAGGTGLSAFLGMLDELAEQGCSPPV 240 (340)
T ss_pred HhhCC-------CCC---------------CEEEEEcCcceeEeC-CCCCcEEEEeCCcCccHHHHHHHHHHHcCCCCcE
Confidence 76432 334 889999999998754 335789999999999999999999987532
Q ss_pred -------cchhhH-HHHHHHhhhcCCCe-EEEEEcCCCCCCCcccCccccCCHHHHHH
Q 003558 750 -------AIEEEE-ENDLENGRDTGVNT-TIIIIDNNYEPFFFWTQKKGPIQDKKSIL 798 (811)
Q Consensus 750 -------~~~~~~-~~el~~~~~~~~~~-~i~v~~~~~~~~~~w~g~~G~i~~~~~~~ 798 (811)
+.++++ .+++.++..+..+. .+++++.++++ |.|..|+|++.+.+.
T Consensus 241 ~l~~g~r~~~dl~~~~el~~~~~~~~~~~~~~~~s~~~~~---~~g~~g~v~~~l~~~ 295 (340)
T PRK11872 241 HLYYGVRHAADLCELQRLAAYAERLPNFRYHPVVSKASAD---WQGKRGYIHEHFDKA 295 (340)
T ss_pred EEEEecCChHHhccHHHHHHHHHHCCCcEEEEEEeCCCCc---CCCceeeccHHHHHh
Confidence 222333 44555555555553 33455556666 999999999877653
No 26
>cd06221 sulfite_reductase_like Anaerobic sulfite reductase contains an FAD and NADPH binding module with structural similarity to ferredoxin reductase and sequence similarity to dihydroorotate dehydrogenases. Clostridium pasteurianum inducible dissimilatory type sulfite reductase is linked to ferredoxin and reduces NH2OH and SeO3 at a lesser rate than it's normal substate SO3(2-). Dihydroorotate dehydrogenases (DHODs) catalyze the only redox reaction in pyrimidine de novo biosynthesis. They catalyze the oxidation of (S)-dihydroorotate to orotate coupled with the reduction of NAD+.
Probab=99.81 E-value=3.9e-19 Score=188.81 Aligned_cols=165 Identities=26% Similarity=0.424 Sum_probs=122.2
Q ss_pred EEEEEEecCCEEEEEEEcCCC----cccCCCcEEEEEeccCCCCeeecCcccCCCC-CCeEEEEEEEcCCccHhHHHHhh
Q 003558 605 IQKVAVYPGNVLALHMSKPDR----FRYKSGQYMFVNCAAVSPFEWHPFSITSAPD-DDYLSVHIRTLGDWTRQLRTVFS 679 (811)
Q Consensus 605 i~~v~~~~~~v~~l~l~~p~~----~~~~pGQyv~l~~p~~s~~e~HPFSIas~p~-~~~l~~~Ik~~g~~T~~L~~~~~ 679 (811)
|.+++.+++++..+++..+.+ ++|+||||+.|.+|..+ .|||||+|+|+ ++.++|+||..|.+|+.|.+ +
T Consensus 1 v~~i~~~t~~v~~~~l~~~~~~~~~~~~~pGQ~i~l~~~~~~---~~pySi~s~~~~~~~l~~~Ik~~G~~S~~L~~-l- 75 (253)
T cd06221 1 IVEVVDETEDIKTFTLRLEDDDEELFTFKPGQFVMLSLPGVG---EAPISISSDPTRRGPLELTIRRVGRVTEALHE-L- 75 (253)
T ss_pred CceEEeccCCceEEEEEeCCCccccCCcCCCCEEEEEcCCCC---ccceEecCCCCCCCeEEEEEEeCChhhHHHHc-C-
Confidence 356788889887777776443 78999999999998653 39999999996 68999999999999988763 2
Q ss_pred hccCCCCCCCcccccccCCCCCCCCEEEEEcccCCCCC-CCCCCCeEEEEEeCcCHHHHHHHHHHHHHhcc---------
Q 003558 680 EVCRPPPNGISGLLRAEGHNNPDFPRVLIDGPYGAPAQ-DYKEYEVVLLVGLGIGATPMISIVKDIVNNMK--------- 749 (811)
Q Consensus 680 ~~~~~~~~G~sg~~~~~~~~~~~~~~v~idGPyG~~~~-~~~~~~~vllIagGiGITP~lsil~~l~~~~~--------- 749 (811)
++| +++.|+||||.+.. +...++++|+||||+||||++||++++++...
T Consensus 76 ------~~G---------------~~v~i~gP~G~~f~~~~~~~~~iv~IA~G~GitP~ls~l~~~~~~~~~~~~i~Li~ 134 (253)
T cd06221 76 ------KPG---------------DTVGLRGPFGNGFPVEEMKGKDLLLVAGGLGLAPLRSLINYILDNREDYGKVTLLY 134 (253)
T ss_pred ------CCC---------------CEEEEECCcCCCcccccccCCeEEEEccccchhHHHHHHHHHHhccccCCcEEEEE
Confidence 233 78999999999543 22257899999999999999999999987531
Q ss_pred ---cchhh-HHHHHHHhhhcCCCe-EEEEEcCCCCCCCcccCccccCCHHHHHHh
Q 003558 750 ---AIEEE-EENDLENGRDTGVNT-TIIIIDNNYEPFFFWTQKKGPIQDKKSILL 799 (811)
Q Consensus 750 ---~~~~~-~~~el~~~~~~~~~~-~i~v~~~~~~~~~~w~g~~G~i~~~~~~~~ 799 (811)
+.++. +.+++.++... .+. ..++++++.+. |.+..|++++.+.+..
T Consensus 135 ~~r~~~~~~~~~~L~~l~~~-~~~~~~~~~s~~~~~---~~~~~g~v~~~l~~~~ 185 (253)
T cd06221 135 GARTPEDLLFKEELKEWAKR-SDVEVILTVDRAEEG---WTGNVGLVTDLLPELT 185 (253)
T ss_pred ecCChHHcchHHHHHHHHhc-CCeEEEEEeCCCCCC---ccCCccccchhHHhcC
Confidence 11222 34555555544 443 33455555555 8889999988665543
No 27
>PRK08221 anaerobic sulfite reductase subunit B; Provisional
Probab=99.81 E-value=6.6e-19 Score=188.01 Aligned_cols=165 Identities=19% Similarity=0.288 Sum_probs=123.8
Q ss_pred cceEEEEEEEecCCEEEEEEEcCCCcccCCCcEEEEEeccCCCCeeecCcccCCCCCCeEEEEEEEcCCccHhHHHHhhh
Q 003558 601 KAVSIQKVAVYPGNVLALHMSKPDRFRYKSGQYMFVNCAAVSPFEWHPFSITSAPDDDYLSVHIRTLGDWTRQLRTVFSE 680 (811)
Q Consensus 601 ~~~~i~~v~~~~~~v~~l~l~~p~~~~~~pGQyv~l~~p~~s~~e~HPFSIas~p~~~~l~~~Ik~~g~~T~~L~~~~~~ 680 (811)
..++|++++.+++++..+++..| +.|+||||+.|.+|..+ .|||||++.+ ++.++|+||..|..|..|.+ +
T Consensus 8 ~~~~v~~i~~~t~~~~~~~l~~~--~~~~pGQfi~l~~~~~~---~~pySi~~~~-~~~~~~~Ik~~G~~S~~L~~-l-- 78 (263)
T PRK08221 8 AAYKILDITKHTDIEYTFRVEVD--GPVKPGQFFEVSLPKVG---EAPISVSDYG-DGYIDLTIRRVGKVTDEIFN-L-- 78 (263)
T ss_pred ccEEEEEEeccCCcEEEEEecCC--CCCCCCceEEEEeCCCC---cceeeccCCC-CCEEEEEEEeCCchhhHHHh-C--
Confidence 35789999999999999999875 58999999999998653 3999999875 77899999999998887754 2
Q ss_pred ccCCCCCCCcccccccCCCCCCCCEEEEEcccCC-CCCCCCCCCeEEEEEeCcCHHHHHHHHHHHHHhcc----------
Q 003558 681 VCRPPPNGISGLLRAEGHNNPDFPRVLIDGPYGA-PAQDYKEYEVVLLVGLGIGATPMISIVKDIVNNMK---------- 749 (811)
Q Consensus 681 ~~~~~~~G~sg~~~~~~~~~~~~~~v~idGPyG~-~~~~~~~~~~vllIagGiGITP~lsil~~l~~~~~---------- 749 (811)
++| +.|.|.||||. +..+....+++||||||+||||++|++++++++..
T Consensus 79 -----~~G---------------d~v~v~gP~G~~f~~~~~~~~~~llIAgGtGItP~~sil~~~~~~~~~~~~v~L~~g 138 (263)
T PRK08221 79 -----KEG---------------DKLFLRGPYGNGFPVDTYKGKELIVVAGGTGVAPVKGLMRYFYENPQEIKSLDLILG 138 (263)
T ss_pred -----CCC---------------CEEEEECCCCCCcccCccCCccEEEEcccccHHHHHHHHHHHHhCcccCceEEEEEe
Confidence 334 88999999998 54433346799999999999999999999986532
Q ss_pred --cchhhHHHHHHHhhhcCCCeEEEEEcCCCCCCCcccCccccCCHHHHHH
Q 003558 750 --AIEEEEENDLENGRDTGVNTTIIIIDNNYEPFFFWTQKKGPIQDKKSIL 798 (811)
Q Consensus 750 --~~~~~~~~el~~~~~~~~~~~i~v~~~~~~~~~~w~g~~G~i~~~~~~~ 798 (811)
+.+++++.++++......+.. ++++++.+. |.|..|++++.+.+.
T Consensus 139 ~r~~~~l~~~~el~~~~~~~~~~-~~~~~~~~~---~~~~~G~v~~~l~~~ 185 (263)
T PRK08221 139 FKNPDDILFKEDLKRWREKINLI-LTLDEGEEG---YRGNVGLVTKYIPEL 185 (263)
T ss_pred cCCHHHhhHHHHHHHHhhcCcEE-EEecCCCCC---CccCccccChhhHhc
Confidence 122334444443333344433 334444555 889999999766553
No 28
>cd06196 FNR_like_1 Ferredoxin reductase-like proteins catalyze electron transfer between an NAD(P)-binding domain of the alpha/beta class and a discrete (usually N-terminal) domain which varies in orientation with respect to the NAD(P) binding domain. The N-terminal region may contain a flavin prosthetic group (as in flavoenzymes) or use flavin as a substrate. Ferredoxin is reduced in the final stage of photosystem I. The flavoprotein Ferredoxin-NADP+ reductase transfers electrons from reduced ferredoxin to FAD (forming FADH2 via a semiquinone intermediate) which then transfers a hydride ion to convert NADP+ to NADPH.
Probab=99.81 E-value=6.6e-19 Score=182.59 Aligned_cols=120 Identities=28% Similarity=0.455 Sum_probs=102.3
Q ss_pred ceEEEEEEEecCCEEEEEEEcCCCcccCCCcEEEEEeccCC-CCeeecCcccCCCCCCeEEEEEEEc---CCccHhHHHH
Q 003558 602 AVSIQKVAVYPGNVLALHMSKPDRFRYKSGQYMFVNCAAVS-PFEWHPFSITSAPDDDYLSVHIRTL---GDWTRQLRTV 677 (811)
Q Consensus 602 ~~~i~~v~~~~~~v~~l~l~~p~~~~~~pGQyv~l~~p~~s-~~e~HPFSIas~p~~~~l~~~Ik~~---g~~T~~L~~~ 677 (811)
.++|.+++.++++++.+++..|..+.|+||||+.|.++..+ ..++|||||+|.|+++.++|+||.. |+.|+.|.++
T Consensus 2 ~~~v~~~~~~~~~~~~~~l~~~~~~~~~pGQ~v~l~~~~~~~~~~~r~ySi~s~~~~~~l~~~vk~~~~~g~~s~~l~~l 81 (218)
T cd06196 2 TVTLLSIEPVTHDVKRLRFDKPEGYDFTPGQATEVAIDKPGWRDEKRPFTFTSLPEDDVLEFVIKSYPDHDGVTEQLGRL 81 (218)
T ss_pred ceEEEEEEEcCCCeEEEEEcCCCcCCCCCCCEEEEEeeCCCCCccccccccccCCCCCeEEEEEEEcCCCCcHhHHHHhC
Confidence 56899999999999999999988899999999999997654 3478999999999889999999986 5677776432
Q ss_pred hhhccCCCCCCCcccccccCCCCCCCCEEEEEcccCCCCCCCCCCCeEEEEEeCcCHHHHHHHHHHHHHhc
Q 003558 678 FSEVCRPPPNGISGLLRAEGHNNPDFPRVLIDGPYGAPAQDYKEYEVVLLVGLGIGATPMISIVKDIVNNM 748 (811)
Q Consensus 678 ~~~~~~~~~~G~sg~~~~~~~~~~~~~~v~idGPyG~~~~~~~~~~~vllIagGiGITP~lsil~~l~~~~ 748 (811)
++| +++.+.||||.+.. .+++||||||+||||++|+++++....
T Consensus 82 --------~~G---------------~~v~i~gP~G~~~~----~~~~vlia~GtGiaP~~s~l~~~~~~~ 125 (218)
T cd06196 82 --------QPG---------------DTLLIEDPWGAIEY----KGPGVFIAGGAGITPFIAILRDLAAKG 125 (218)
T ss_pred --------CCC---------------CEEEEECCccceEe----cCceEEEecCCCcChHHHHHHHHHhCC
Confidence 344 78999999999753 257899999999999999999998753
No 29
>cd00322 FNR_like Ferredoxin reductase (FNR), an FAD and NAD(P) binding protein, was intially identified as a chloroplast reductase activity, catalyzing the electron transfer from reduced iron-sulfur protein ferredoxin to NADP+ as the final step in the electron transport mechanism of photosystem I. FNR transfers electrons from reduced ferredoxin to FAD (forming FADH2 via a semiquinone intermediate) and then transfers a hydride ion to convert NADP+ to NADPH. FNR has since been shown to utilize a variety of electron acceptors and donors and has a variety of physiological functions including nitrogen assimilation, dinitrogen fixation, steroid hydroxylation, fatty acid metabolism, oxygenase activity, and methane assimilation in many organisms. FNR has an NAD(P)-binding sub-domain of the alpha/beta class and a discrete (usually N-terminal) flavin sub-domain which vary in orientation with respect to the NAD(P) binding domain. The N-terminal moeity may contain a flavin prosthetic group (as in
Probab=99.81 E-value=6.7e-19 Score=182.49 Aligned_cols=160 Identities=22% Similarity=0.329 Sum_probs=122.3
Q ss_pred EEEEecCCEEEEEEEcCCCcccCCCcEEEEEeccCCCCeeecCcccCCCCC-CeEEEEEEEc--CCccHhHHHHhhhccC
Q 003558 607 KVAVYPGNVLALHMSKPDRFRYKSGQYMFVNCAAVSPFEWHPFSITSAPDD-DYLSVHIRTL--GDWTRQLRTVFSEVCR 683 (811)
Q Consensus 607 ~v~~~~~~v~~l~l~~p~~~~~~pGQyv~l~~p~~s~~e~HPFSIas~p~~-~~l~~~Ik~~--g~~T~~L~~~~~~~~~ 683 (811)
+++.+++++..+++..|..+.|+||||+.|.+|..+...+|||||+|.|.+ +.++|+||.. |.+|+.|.+.
T Consensus 2 ~~~~~~~~~~~~~l~~~~~~~~~pGQ~v~l~~~~~~~~~~r~ySi~s~~~~~~~~~l~vk~~~~G~~s~~l~~~------ 75 (223)
T cd00322 2 ATEDVTDDVRLFRLQLPNGFSFKPGQYVDLHLPGDGRGLRRAYSIASSPDEEGELELTVKIVPGGPFSAWLHDL------ 75 (223)
T ss_pred ceEEecCCeEEEEEecCCCCCcCCCcEEEEEecCCCCcceeeeeccCCCCCCCeEEEEEEEeCCCchhhHHhcC------
Confidence 345677899999999887788999999999999766678999999999976 8999999999 8899888753
Q ss_pred CCCCCCcccccccCCCCCCCCEEEEEcccCCCCCCCCCCCeEEEEEeCcCHHHHHHHHHHHHHhcc-----------cch
Q 003558 684 PPPNGISGLLRAEGHNNPDFPRVLIDGPYGAPAQDYKEYEVVLLVGLGIGATPMISIVKDIVNNMK-----------AIE 752 (811)
Q Consensus 684 ~~~~G~sg~~~~~~~~~~~~~~v~idGPyG~~~~~~~~~~~vllIagGiGITP~lsil~~l~~~~~-----------~~~ 752 (811)
++ ++++.|.||+|.+......++++||||||+||||++|+++++.+... +.+
T Consensus 76 --~~---------------G~~v~i~gP~G~~~~~~~~~~~~v~ia~G~Giap~~~~l~~~~~~~~~~~v~l~~~~r~~~ 138 (223)
T cd00322 76 --KP---------------GDEVEVSGPGGDFFLPLEESGPVVLIAGGIGITPFRSMLRHLAADKPGGEITLLYGARTPA 138 (223)
T ss_pred --CC---------------CCEEEEECCCcccccCcccCCcEEEEecCCchhHHHHHHHHHHhhCCCCcEEEEEecCCHH
Confidence 23 38899999999986545677899999999999999999999987521 122
Q ss_pred hh-HHHHHHHhhhcCCCeEE-EEEcCCCCCCCcccCccccCC
Q 003558 753 EE-EENDLENGRDTGVNTTI-IIIDNNYEPFFFWTQKKGPIQ 792 (811)
Q Consensus 753 ~~-~~~el~~~~~~~~~~~i-~v~~~~~~~~~~w~g~~G~i~ 792 (811)
+. +.+++.++.+...+..+ ++++++... |.+..+++.
T Consensus 139 ~~~~~~el~~l~~~~~~~~~~~~~~~~~~~---~~~~~~~~~ 177 (223)
T cd00322 139 DLLFLDELEELAKEGPNFRLVLALSRESEA---KLGPGGRID 177 (223)
T ss_pred HhhHHHHHHHHHHhCCCeEEEEEecCCCCC---CCcccceee
Confidence 23 34555555554555433 345554444 666666654
No 30
>PRK10684 HCP oxidoreductase, NADH-dependent; Provisional
Probab=99.81 E-value=7.1e-19 Score=194.15 Aligned_cols=171 Identities=15% Similarity=0.278 Sum_probs=126.8
Q ss_pred cceEEEEEEEecCCEEEEEEEcCCCcccCCCcEEEEEeccCCCCeeecCcccCCCCC-CeEEEEEEEc--CCccHhHHHH
Q 003558 601 KAVSIQKVAVYPGNVLALHMSKPDRFRYKSGQYMFVNCAAVSPFEWHPFSITSAPDD-DYLSVHIRTL--GDWTRQLRTV 677 (811)
Q Consensus 601 ~~~~i~~v~~~~~~v~~l~l~~p~~~~~~pGQyv~l~~p~~s~~e~HPFSIas~p~~-~~l~~~Ik~~--g~~T~~L~~~ 677 (811)
+.++|.+++.+++++..++|..++.+.|+||||+.|.++.. ...+|||||+|.|.+ +.++|+||+. |..|+.|.+.
T Consensus 10 ~~~~V~~i~~~t~~v~~l~l~~~~~~~f~pGQfv~l~~~~~-~~~~R~ySias~p~~~~~l~i~Vk~~~~G~~S~~L~~~ 88 (332)
T PRK10684 10 NRMQVHSIVQETPDVWTISLICHDFYPYRAGQYALVSIRNS-AETLRAYTLSSTPGVSEFITLTVRRIDDGVGSQWLTRD 88 (332)
T ss_pred eeEEEEEEEccCCCeEEEEEcCCCCCCcCCCCEEEEEecCC-CEeeeeecccCCCCCCCcEEEEEEEcCCCcchhHHHhc
Confidence 36789999999999999999887788999999999999853 235799999999964 6899999997 5677777653
Q ss_pred hhhccCCCCCCCcccccccCCCCCCCCEEEEEcccCCCCCCCCCCCeEEEEEeCcCHHHHHHHHHHHHHhcc--------
Q 003558 678 FSEVCRPPPNGISGLLRAEGHNNPDFPRVLIDGPYGAPAQDYKEYEVVLLVGLGIGATPMISIVKDIVNNMK-------- 749 (811)
Q Consensus 678 ~~~~~~~~~~G~sg~~~~~~~~~~~~~~v~idGPyG~~~~~~~~~~~vllIagGiGITP~lsil~~l~~~~~-------- 749 (811)
+ ++| ++|.|.||+|.+..+....+++|||||||||||++||+++++.+..
T Consensus 89 l-------~~G---------------d~v~v~gP~G~f~l~~~~~~~~vliAgG~GItP~~sml~~~~~~~~~~~v~l~y 146 (332)
T PRK10684 89 V-------KRG---------------DYLWLSDAMGEFTCDDKAEDKYLLLAAGCGVTPIMSMRRWLLKNRPQADVQVIF 146 (332)
T ss_pred C-------CCC---------------CEEEEeCCccccccCCCCCCcEEEEecCcCcchHHHHHHHHHhcCCCCCEEEEE
Confidence 3 334 8999999999987544456789999999999999999999876532
Q ss_pred ---cchhh-HHHHHHHhhhcCCCeEEEEEcCCCCCCCcccC-ccccCCHHHHHH
Q 003558 750 ---AIEEE-EENDLENGRDTGVNTTIIIIDNNYEPFFFWTQ-KKGPIQDKKSIL 798 (811)
Q Consensus 750 ---~~~~~-~~~el~~~~~~~~~~~i~v~~~~~~~~~~w~g-~~G~i~~~~~~~ 798 (811)
+.+++ +.+++.++..++.+..++++..... |.| ..|++++.....
T Consensus 147 ~~r~~~~~~~~~el~~l~~~~~~~~~~~~~~~~~----~~~~~~grl~~~~l~~ 196 (332)
T PRK10684 147 NVRTPQDVIFADEWRQLKQRYPQLNLTLVAENNA----TEGFIAGRLTRELLQQ 196 (332)
T ss_pred eCCChHHhhhHHHHHHHHHHCCCeEEEEEeccCC----CCCccccccCHHHHHH
Confidence 22223 4455555555555544443322221 233 589998765443
No 31
>PRK00054 dihydroorotate dehydrogenase electron transfer subunit; Reviewed
Probab=99.81 E-value=7.1e-19 Score=186.49 Aligned_cols=165 Identities=22% Similarity=0.297 Sum_probs=124.8
Q ss_pred ccceEEEEEEEecCCEEEEEEEcCCCcccCCCcEEEEEeccCCCCeeecCcccCCCCCCeEEEEEEEcCCccHhHHHHhh
Q 003558 600 IKAVSIQKVAVYPGNVLALHMSKPDRFRYKSGQYMFVNCAAVSPFEWHPFSITSAPDDDYLSVHIRTLGDWTRQLRTVFS 679 (811)
Q Consensus 600 ~~~~~i~~v~~~~~~v~~l~l~~p~~~~~~pGQyv~l~~p~~s~~e~HPFSIas~p~~~~l~~~Ik~~g~~T~~L~~~~~ 679 (811)
++.++|++++.+++++..+++..|..+.|+||||+.|.+|..+...+|||||+|.| ++.++|+||..|.+|+.|.+ +
T Consensus 4 ~~~~~V~~~~~~t~d~~~l~l~~~~~~~~~pGQ~v~l~~~~~~~~~~r~ySi~s~~-~~~l~l~Vk~~G~~t~~l~~-l- 80 (250)
T PRK00054 4 PENMKIVENKEIAPNIYTLVLDGEKVFDMKPGQFVMVWVPGVEPLLERPISISDID-KNEITILYRKVGEGTKKLSK-L- 80 (250)
T ss_pred ceEEEEEEEEEecCCeEEEEEeCccccCCCCCcEEEEEeCCCCCcCceeeEEeeeC-CCEEEEEEEEcChHHHHHhc-C-
Confidence 45688999999999999999998777889999999999997766789999999998 88999999999999987753 2
Q ss_pred hccCCCCCCCcccccccCCCCCCCCEEEEEcccCCCCCCCCCCCeEEEEEeCcCHHHHHHHHHHHHHhcc---------c
Q 003558 680 EVCRPPPNGISGLLRAEGHNNPDFPRVLIDGPYGAPAQDYKEYEVVLLVGLGIGATPMISIVKDIVNNMK---------A 750 (811)
Q Consensus 680 ~~~~~~~~G~sg~~~~~~~~~~~~~~v~idGPyG~~~~~~~~~~~vllIagGiGITP~lsil~~l~~~~~---------~ 750 (811)
++| +++.|.||||.+.......+++|+||||+||||++|+++++..... +
T Consensus 81 ------~~G---------------~~v~i~gP~G~~f~l~~~~~~~vlIagG~GiaP~~s~l~~~~~~~~~v~l~~~~r~ 139 (250)
T PRK00054 81 ------KEG---------------DELDIRGPLGNGFDLEEIGGKVLLVGGGIGVAPLYELAKELKKKGVEVTTVLGART 139 (250)
T ss_pred ------CCC---------------CEEEEEcccCCCCCCCCCCCeEEEEeccccHHHHHHHHHHHHHcCCcEEEEEEcCC
Confidence 233 7899999999843222366899999999999999999999986432 2
Q ss_pred chhhHHHHHHHhhhcCCCeEEEEEcCCCCCCCcccCccccCCHHHHHH
Q 003558 751 IEEEEENDLENGRDTGVNTTIIIIDNNYEPFFFWTQKKGPIQDKKSIL 798 (811)
Q Consensus 751 ~~~~~~~el~~~~~~~~~~~i~v~~~~~~~~~~w~g~~G~i~~~~~~~ 798 (811)
.++.++.+.++... + +++.. ++. |.|.+|++++.+.+.
T Consensus 140 ~~d~~~~~el~~~~---~--~~~~~--~~~---~~~~~g~v~~~l~~~ 177 (250)
T PRK00054 140 KDEVIFEEEFAKVG---D--VYVTT--DDG---SYGFKGFVTDVLDEL 177 (250)
T ss_pred HHHhhhHHHHHhcC---C--EEEEe--cCC---CCCcccchhHhHhhh
Confidence 22333333332221 1 22222 233 678889998876544
No 32
>cd06197 FNR_like_2 FAD/NAD(P) binding domain of ferredoxin reductase-like proteins. Ferredoxin reductase (FNR) was intially identified as a chloroplast reductase activity, catalyzing the electron transfer from reduced iron-sulfur protein ferredoxin to NADP+ as the final step in the electron transport mechanism of photosystem I. FNR transfers electrons from reduced ferredoxin to FAD (forming FADH2 via a semiquinone intermediate) and then transfers a hydride ion to convert NADP+ to NADPH. FNR has since been shown to utilize a variety of electron acceptors and donors and have a variety of physiological functions in a variety of organisms including nitrogen assimilation, dinitrogen fixation, steroid hydroxylation, fatty acid metabolism, oxygenase activity, and methane assimilation. FNR has an NAD(P)-binding sub-domain of the alpha/beta class and a discrete (usually N-terminal) flavin sub-domain which varies in orientation with respect to the NAD(P) binding domain. The N-terminal moeity
Probab=99.81 E-value=3.4e-19 Score=185.25 Aligned_cols=167 Identities=17% Similarity=0.188 Sum_probs=119.4
Q ss_pred EEEEecCCEEEEEEEcCCC---cccCCCcEEEEEeccC----------------CCCeeecCcccCCCCC----CeEEEE
Q 003558 607 KVAVYPGNVLALHMSKPDR---FRYKSGQYMFVNCAAV----------------SPFEWHPFSITSAPDD----DYLSVH 663 (811)
Q Consensus 607 ~v~~~~~~v~~l~l~~p~~---~~~~pGQyv~l~~p~~----------------s~~e~HPFSIas~p~~----~~l~~~ 663 (811)
+.+.++++|.+++|..|.+ +.|+|||||.|.+|.. +...+|||||+|.|++ +.++|+
T Consensus 2 ~~~~~s~~v~~~~l~~~~~~~~~~~~pGQ~v~l~~~~~~~~~~~~~~~~~p~~~~~~~~R~ySias~p~~~~~~~~l~l~ 81 (220)
T cd06197 2 KSEVITPTLTRFTFELSPPDVVGKWTPGQYITLDFSSELDSGYSHMADDDPQSLNDDFVRTFTVSSAPPHDPATDEFEIT 81 (220)
T ss_pred cceecccceeEEEEEecCCccccccCCCceEEEEccccccccccccccCCcchhcCCceeeEEeecCCccCCCCCEEEEE
Confidence 3567889999999998877 8999999999999853 1135688999999954 689999
Q ss_pred EEEcCCccHhHHHHhhhccCCCCCCCcccccccCCCCCCCCEEEEEcccCCCCCCC---CCCCeEEEEEeCcCHHHHHHH
Q 003558 664 IRTLGDWTRQLRTVFSEVCRPPPNGISGLLRAEGHNNPDFPRVLIDGPYGAPAQDY---KEYEVVLLVGLGIGATPMISI 740 (811)
Q Consensus 664 Ik~~g~~T~~L~~~~~~~~~~~~~G~sg~~~~~~~~~~~~~~v~idGPyG~~~~~~---~~~~~vllIagGiGITP~lsi 740 (811)
||+.|++|+.|.+..... .. .++.+.|+||||.+..+. ..++++|||||||||||++|+
T Consensus 82 vk~~G~~T~~L~~~~~~~---~~---------------~G~~v~v~gP~G~f~~~~~~~~~~~~illIagG~GItP~~si 143 (220)
T cd06197 82 VRKKGPVTGFLFQVARRL---RE---------------QGLEVPVLGVGGEFTLSLPGEGAERKMVWIAGGVGITPFLAM 143 (220)
T ss_pred EEeCCCCCHHHHHhhhcc---cC---------------CCceEEEEecCCcccCCcccccCCceEEEEecccchhhHHHH
Confidence 999999999998865320 00 147899999999987543 357899999999999999999
Q ss_pred HHHHHHhcc------------cchhh-HHHHHHHhhhcCCCeEEEEEcCCCCCCCcccCccccCCHHHH
Q 003558 741 VKDIVNNMK------------AIEEE-EENDLENGRDTGVNTTIIIIDNNYEPFFFWTQKKGPIQDKKS 796 (811)
Q Consensus 741 l~~l~~~~~------------~~~~~-~~~el~~~~~~~~~~~i~v~~~~~~~~~~w~g~~G~i~~~~~ 796 (811)
+++++.... +.+++ +.+++.+..........+.+. .++-||..|.++....
T Consensus 144 l~~l~~~~~~~~~v~l~~~~r~~~~~~~~~el~~~~~~~~~~~~~~~~-----~v~~CGP~~m~~~~~~ 207 (220)
T cd06197 144 LRAILSSRNTTWDITLLWSLREDDLPLVMDTLVRFPGLPVSTTLFITS-----EVYLCGPPALEKAVLE 207 (220)
T ss_pred HHHHHhcccCCCcEEEEEEecchhhHHHHHHHHhccCCceEEEEEEec-----cEEEECcHHHHHHHHH
Confidence 999986421 12222 344443322211112222221 3567898888875543
No 33
>cd06183 cyt_b5_reduct_like Cytochrome b5 reductase catalyzes the reduction of 2 molecules of cytochrome b5 using NADH as an electron donor. Like ferredoxin reductases, these proteins have an N-terminal FAD binding subdomain and a C-terminal NADH binding subdomain, separated by a cleft, which accepts FAD. The NADH-binding moiety interacts with part of the FAD and resembles a Rossmann fold. However, NAD is bound differently than in canonical Rossmann fold proteins. Nitrate reductases, flavoproteins similar to pyridine nucleotide cytochrome reductases, catalyze the reduction of nitrate to nitrite. The enzyme can be divided into three functional fragments that bind the cofactors molybdopterin, heme-iron, and FAD/NADH.
Probab=99.80 E-value=1.5e-18 Score=181.64 Aligned_cols=170 Identities=16% Similarity=0.259 Sum_probs=126.6
Q ss_pred EEEEEEEecCCEEEEEEEcCC---CcccCCCcEEEEEeccCCCCeeecCcccCCCC-CCeEEEEEEEc--CCccHhHHHH
Q 003558 604 SIQKVAVYPGNVLALHMSKPD---RFRYKSGQYMFVNCAAVSPFEWHPFSITSAPD-DDYLSVHIRTL--GDWTRQLRTV 677 (811)
Q Consensus 604 ~i~~v~~~~~~v~~l~l~~p~---~~~~~pGQyv~l~~p~~s~~e~HPFSIas~p~-~~~l~~~Ik~~--g~~T~~L~~~ 677 (811)
+|.+++.+++++..++|..|. .+.++||||+.|.+|..+....|||||+|.|. ++.++|+||.. |..|+.|.+
T Consensus 2 ~v~~~~~~~~~~~~~~l~~~~~~~~~~~~pGq~v~l~~~~~~~~~~R~ysi~s~~~~~~~~~~~v~~~~~G~~s~~l~~- 80 (234)
T cd06183 2 KLVSKEDISHDTRIFRFELPSPDQVLGLPVGQHVELKAPDDGEQVVRPYTPISPDDDKGYFDLLIKIYPGGKMSQYLHS- 80 (234)
T ss_pred EeEEeEecCCCEEEEEEECCCCCCcCCCCcccEEEEEecCCCcccccccccccCCCcCCEEEEEEEECCCCcchhHHhc-
Confidence 578889999999999999875 37899999999999986666899999999885 45899999997 667777653
Q ss_pred hhhccCCCCCCCcccccccCCCCCCCCEEEEEcccCCCCCCCCCC-CeEEEEEeCcCHHHHHHHHHHHHHhc--------
Q 003558 678 FSEVCRPPPNGISGLLRAEGHNNPDFPRVLIDGPYGAPAQDYKEY-EVVLLVGLGIGATPMISIVKDIVNNM-------- 748 (811)
Q Consensus 678 ~~~~~~~~~~G~sg~~~~~~~~~~~~~~v~idGPyG~~~~~~~~~-~~vllIagGiGITP~lsil~~l~~~~-------- 748 (811)
+ ++| +++.|.||||.+..+.... +++||||||+||||+++++++++.+.
T Consensus 81 ~-------~~G---------------~~v~i~gP~G~~~~~~~~~~~~~vliagGtGiaP~~~~l~~~~~~~~~~~~i~l 138 (234)
T cd06183 81 L-------KPG---------------DTVEIRGPFGKFEYKPNGKVKHIGMIAGGTGITPMLQLIRAILKDPEDKTKISL 138 (234)
T ss_pred C-------CCC---------------CEEEEECCccceeecCCCCccEEEEEcCCcchhHHHHHHHHHHhCcCcCcEEEE
Confidence 2 233 7899999999976543333 79999999999999999999998652
Q ss_pred ----ccchhh-HHHHHHHhhhcC-CCe-EEEEEcCCCCCCCcccCccccCCHHHHHHh
Q 003558 749 ----KAIEEE-EENDLENGRDTG-VNT-TIIIIDNNYEPFFFWTQKKGPIQDKKSILL 799 (811)
Q Consensus 749 ----~~~~~~-~~~el~~~~~~~-~~~-~i~v~~~~~~~~~~w~g~~G~i~~~~~~~~ 799 (811)
++.++. +.+++.++.... .+. .+++++++++. |.+..|++++......
T Consensus 139 ~~~~r~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~---~~~~~g~~~~~~l~~~ 193 (234)
T cd06183 139 LYANRTEEDILLREELDELAKKHPDRFKVHYVLSRPPEG---WKGGVGFITKEMIKEH 193 (234)
T ss_pred EEecCCHHHhhhHHHHHHHHHhCcccEEEEEEEcCCCcC---CccccceECHHHHHHh
Confidence 112222 344555444332 233 33345555555 8899999998765543
No 34
>PRK10926 ferredoxin-NADP reductase; Provisional
Probab=99.80 E-value=1.7e-18 Score=183.40 Aligned_cols=168 Identities=14% Similarity=0.155 Sum_probs=121.2
Q ss_pred ccceEEEEEEEecCCEEEEEEEcCCCcccCCCcEEEEEeccCCCCeeecCcccCCCCCCeEEEEEEEc--CCccHhHHHH
Q 003558 600 IKAVSIQKVAVYPGNVLALHMSKPDRFRYKSGQYMFVNCAAVSPFEWHPFSITSAPDDDYLSVHIRTL--GDWTRQLRTV 677 (811)
Q Consensus 600 ~~~~~i~~v~~~~~~v~~l~l~~p~~~~~~pGQyv~l~~p~~s~~e~HPFSIas~p~~~~l~~~Ik~~--g~~T~~L~~~ 677 (811)
|+.++|.+++.++++++++++..|. ..|+||||+.|.++..+...+|||||+|.|+++.++|+||.. |..|+.|.+
T Consensus 4 ~~~~~V~~i~~~t~~v~~l~l~~~~-~~~~pGQfv~l~~~~~g~~~~R~ySias~p~~~~l~~~ik~~~~G~~S~~L~~- 81 (248)
T PRK10926 4 WVTGKVTKVQNWTDALFSLTVHAPV-DPFTAGQFTKLGLEIDGERVQRAYSYVNAPDNPDLEFYLVTVPEGKLSPRLAA- 81 (248)
T ss_pred cEEEEEEEEEEcCCCeEEEEEeCCC-CCCCCCCEEEEEEecCCcEEEeeecccCCCCCCeEEEEEEEeCCCCcChHHHh-
Confidence 5678999999999999999998763 379999999999975454568999999999888999999997 778887753
Q ss_pred hhhccCCCCCCCcccccccCCCCCCCCEEEEEcccCC-CCCCCC-CCCeEEEEEeCcCHHHHHHHHHHHHHhcc------
Q 003558 678 FSEVCRPPPNGISGLLRAEGHNNPDFPRVLIDGPYGA-PAQDYK-EYEVVLLVGLGIGATPMISIVKDIVNNMK------ 749 (811)
Q Consensus 678 ~~~~~~~~~~G~sg~~~~~~~~~~~~~~v~idGPyG~-~~~~~~-~~~~vllIagGiGITP~lsil~~l~~~~~------ 749 (811)
+ ++| ++|.|.||+|. +..+.. ..+++|||||||||||++||++++.+...
T Consensus 82 l-------~~G---------------d~v~i~gp~~g~f~l~~~~~~~~~vlIagGtGItP~~s~l~~~~~~~~~~~v~l 139 (248)
T PRK10926 82 L-------KPG---------------DEVQVVSEAAGFFVLDEVPDCETLWMLATGTAIGPYLSILQEGKDLERFKNLVL 139 (248)
T ss_pred C-------CCC---------------CEEEEecCCCcceEccCCCCCCeEEEEEeeeeHHHHHHHHHhhHhhCCCCcEEE
Confidence 3 334 89999999854 433322 34789999999999999999999875422
Q ss_pred -----cchhh-HHHHHHHhhhcCC-CeE-EEEEcCCCCCCCcccCccccCCHHH
Q 003558 750 -----AIEEE-EENDLENGRDTGV-NTT-IIIIDNNYEPFFFWTQKKGPIQDKK 795 (811)
Q Consensus 750 -----~~~~~-~~~el~~~~~~~~-~~~-i~v~~~~~~~~~~w~g~~G~i~~~~ 795 (811)
+.++. +.+++.++..... +.. +++.++++. +.+.+|+|++.+
T Consensus 140 ~~g~r~~~d~~~~~el~~l~~~~~~~~~v~~~~s~~~~----~~~~~G~v~~~i 189 (248)
T PRK10926 140 VHAARYAADLSYLPLMQELEQRYEGKLRIQTVVSRETA----PGSLTGRVPALI 189 (248)
T ss_pred EEeCCcHHHHHHHHHHHHHHHhCcCCEEEEEEECCCCC----CCCcCCccchhh
Confidence 22233 3455555544443 443 334444322 335678887643
No 35
>TIGR02160 PA_CoA_Oxy5 phenylacetate-CoA oxygenase/reductase, PaaK subunit. Phenylacetate-CoA oxygenase is comprised of a five gene complex responsible for the hydroxylation of phenylacetate-CoA (PA-CoA) as the second catabolic step in phenylacetic acid (PA) degradation. Although the exact function of this enzyme has not been determined, it has been shown to be required for phenylacetic acid degradation and has been proposed to function in a multicomponent oxygenase acting on phenylacetate-CoA.
Probab=99.80 E-value=1.5e-18 Score=193.06 Aligned_cols=169 Identities=17% Similarity=0.262 Sum_probs=125.9
Q ss_pred cceEEEEEEEecCCEEEEEEEcCCC----cccCCCcEEEEEeccCCCCeeecCcccCCCCCCeEEEEEEEcC--CccHhH
Q 003558 601 KAVSIQKVAVYPGNVLALHMSKPDR----FRYKSGQYMFVNCAAVSPFEWHPFSITSAPDDDYLSVHIRTLG--DWTRQL 674 (811)
Q Consensus 601 ~~~~i~~v~~~~~~v~~l~l~~p~~----~~~~pGQyv~l~~p~~s~~e~HPFSIas~p~~~~l~~~Ik~~g--~~T~~L 674 (811)
+.++|.+++.+++++++|+|..|.+ +.|+||||+.|.++..+...+|||||+|.|+++.++|+||..+ ..|..|
T Consensus 2 ~~~~V~~i~~~t~~~~~l~l~~~~~~~~~~~~~pGQ~v~l~~~~~g~~~~R~ySi~s~p~~~~l~i~vk~~~~G~~S~~l 81 (352)
T TIGR02160 2 HRLTVAEVERLTADAVAISFEIPDELAEDYRFAPGQHLTLRREVDGEELRRSYSICSAPAPGEIRVAVKKIPGGLFSTWA 81 (352)
T ss_pred eEeEEEEEEecCCCeEEEEEeCCccccccCCCCCCCeEEEEEecCCcEeeeeccccCCCCCCcEEEEEEEeCCCcchHHH
Confidence 5678999999999999999997743 5899999999999755555689999999998889999999985 456666
Q ss_pred HHHhhhccCCCCCCCcccccccCCCCCCCCEEEEEcccCCCCCCCC--CCCeEEEEEeCcCHHHHHHHHHHHHHhcc---
Q 003558 675 RTVFSEVCRPPPNGISGLLRAEGHNNPDFPRVLIDGPYGAPAQDYK--EYEVVLLVGLGIGATPMISIVKDIVNNMK--- 749 (811)
Q Consensus 675 ~~~~~~~~~~~~~G~sg~~~~~~~~~~~~~~v~idGPyG~~~~~~~--~~~~vllIagGiGITP~lsil~~l~~~~~--- 749 (811)
.+.+ ++| +.+.|.||+|.+..+.. ..+++||||||+||||++||+++++.+..
T Consensus 82 ~~~l-------~~G---------------d~v~v~gP~G~f~~~~~~~~~~~~lliagG~GItP~~s~l~~~~~~~~~~~ 139 (352)
T TIGR02160 82 NDEI-------RPG---------------DTLEVMAPQGLFTPDLSTPHAGHYVAVAAGSGITPMLSIAETVLAAEPRST 139 (352)
T ss_pred HhcC-------CCC---------------CEEEEeCCceeeecCCCccccccEEEEeccccHhHHHHHHHHHHhcCCCce
Confidence 5433 334 88999999999864332 34789999999999999999999876532
Q ss_pred --------cchhh-HHHHHHHhhhcCCC-eEE-EEEcCCCCCCCcccCccccCCHH
Q 003558 750 --------AIEEE-EENDLENGRDTGVN-TTI-IIIDNNYEPFFFWTQKKGPIQDK 794 (811)
Q Consensus 750 --------~~~~~-~~~el~~~~~~~~~-~~i-~v~~~~~~~~~~w~g~~G~i~~~ 794 (811)
+.+++ +.+++.++.....+ ..+ ++.+++.+. |.+..|+++..
T Consensus 140 v~l~~~~r~~~d~~~~~el~~l~~~~~~~~~~~~~~s~~~~~---~~~~~gr~~~~ 192 (352)
T TIGR02160 140 FTLVYGNRRTASVMFAEELADLKDKHPQRFHLAHVLSREPRE---APLLSGRLDGE 192 (352)
T ss_pred EEEEEEeCCHHHHHHHHHHHHHHHhCcCcEEEEEEecCCCcC---cccccCccCHH
Confidence 22223 45566555555543 333 345554444 66678888754
No 36
>cd06198 FNR_like_3 NAD(P) binding domain of ferredoxin reductase-like proteins catalyze electron transfer between an NAD(P)-binding sub-domain of the alpha/beta class and a discrete (usually N-terminal) domain, which varies in orientation with respect to the NAD(P) binding domain. The N-terminal domain may contain a flavin prosthetic group (as in flavoenzymes) or use flavin as a substrate. Ferredoxin is reduced in the final stage of photosystem I. The flavoprotein Ferredoxin-NADP+ reductase transfers electrons from reduced ferredoxin to FAD (forming FADH2 via a semiquinone intermediate) which then transfers a hydride ion to convert NADP+ to NADPH.
Probab=99.80 E-value=1e-18 Score=181.02 Aligned_cols=113 Identities=31% Similarity=0.530 Sum_probs=96.0
Q ss_pred CCEEEEEEEcCCC-cccCCCcEEEEEeccCCCCeeecCcccCCCCC-CeEEEEEEEcCCccHhHHHHhhhccCCCCCCCc
Q 003558 613 GNVLALHMSKPDR-FRYKSGQYMFVNCAAVSPFEWHPFSITSAPDD-DYLSVHIRTLGDWTRQLRTVFSEVCRPPPNGIS 690 (811)
Q Consensus 613 ~~v~~l~l~~p~~-~~~~pGQyv~l~~p~~s~~e~HPFSIas~p~~-~~l~~~Ik~~g~~T~~L~~~~~~~~~~~~~G~s 690 (811)
.++++|++..+.+ +.|+|||||+|+++..+.+++|||||+|.|.+ +.++|+||..|++|+.|.+.+ ++|
T Consensus 7 ~~~~~i~l~~~~~~~~~~pGQ~v~l~~~~~~~~~~r~ySi~s~~~~~~~l~l~vk~~G~~t~~l~~~l-------~~G-- 77 (216)
T cd06198 7 RPTTTLTLEPRGPALGHRAGQFAFLRFDASGWEEPHPFTISSAPDPDGRLRFTIKALGDYTRRLAERL-------KPG-- 77 (216)
T ss_pred cceEEEEEeeCCCCCCcCCCCEEEEEeCCCCCCCCCCcEEecCCCCCCeEEEEEEeCChHHHHHHHhC-------CCC--
Confidence 4678888887665 78999999999998766678999999999865 599999999999999887543 233
Q ss_pred ccccccCCCCCCCCEEEEEcccCCCCCCCCCCCeEEEEEeCcCHHHHHHHHHHHHHhc
Q 003558 691 GLLRAEGHNNPDFPRVLIDGPYGAPAQDYKEYEVVLLVGLGIGATPMISIVKDIVNNM 748 (811)
Q Consensus 691 g~~~~~~~~~~~~~~v~idGPyG~~~~~~~~~~~vllIagGiGITP~lsil~~l~~~~ 748 (811)
++|.|.||||.+..+.. ++++||||||+||||++|+++++.++.
T Consensus 78 -------------~~v~i~gP~G~~~~~~~-~~~~vlia~GtGiap~~~~l~~~~~~~ 121 (216)
T cd06198 78 -------------TRVTVEGPYGRFTFDDR-RARQIWIAGGIGITPFLALLEALAARG 121 (216)
T ss_pred -------------CEEEEECCCCCCccccc-CceEEEEccccCHHHHHHHHHHHHhcC
Confidence 78999999999875433 789999999999999999999998764
No 37
>COG5126 FRQ1 Ca2+-binding protein (EF-Hand superfamily) [Signal transduction mechanisms / Cytoskeleton / Cell division and chromosome partitioning / General function prediction only]
Probab=99.79 E-value=5.4e-19 Score=170.84 Aligned_cols=142 Identities=20% Similarity=0.346 Sum_probs=123.1
Q ss_pred CCcccHHHHHHHHHhHccCCCCceehhhhcccc---cCCCCCHHHHHHHHHHHHccCCCCCCceeHHHHHHHHHHhc-cC
Q 003558 164 DGGAGWANVEKRFDEITASTNGVLPRARFGECI---GMNKDSKDFAVELFDALTRRRNIQGDTITKDQLREFWDQIS-DQ 239 (811)
Q Consensus 164 ~~~~~~~~l~~~F~~lD~d~dG~Is~~ef~~~l---g~~~~~~~~~~~lf~~l~d~d~~~~G~I~~~EF~~~~~~l~-~~ 239 (811)
.+.+++++++++|..+|.|++|.|++++|..++ |..+ ++.++.++|+. .+. + .+.|+|.||+.++.... ..
T Consensus 14 ~t~~qi~~lkeaF~l~D~d~~G~I~~~el~~ilr~lg~~~-s~~ei~~l~~~-~d~-~--~~~idf~~Fl~~ms~~~~~~ 88 (160)
T COG5126 14 LTEEQIQELKEAFQLFDRDSDGLIDRNELGKILRSLGFNP-SEAEINKLFEE-IDA-G--NETVDFPEFLTVMSVKLKRG 88 (160)
T ss_pred CCHHHHHHHHHHHHHhCcCCCCCCcHHHHHHHHHHcCCCC-cHHHHHHHHHh-ccC-C--CCccCHHHHHHHHHHHhccC
Confidence 456788999999999999999999999999987 7777 88999999996 343 4 79999999999998765 66
Q ss_pred ChHHHHHHHhhhhcCCCCCceeHHHHHHHHHhhhccCCCcchHHHHHHHHHHHHHHcCCCCCCcccHHHHHHHHHhCCc
Q 003558 240 SFDSRLQTFFDMVDKDADGRITEDEVREIISLSASANKLSNIQKQAEEYAALIMEELDPDHLGCIMIDNLEMLLLQAPA 318 (811)
Q Consensus 240 ~~~e~l~~~F~~fDkD~dG~It~eE~~~il~~~~~~~~l~~~~~~~~e~~~~i~~e~D~d~dG~Is~eEF~~~l~~~p~ 318 (811)
..+++++.+|+.||+|+||+|+.+||+.+++... ++..++.++.+++++|+|+||+|+|+||.+++...|.
T Consensus 89 ~~~Eel~~aF~~fD~d~dG~Is~~eL~~vl~~lg--------e~~~deev~~ll~~~d~d~dG~i~~~eF~~~~~~~~~ 159 (160)
T COG5126 89 DKEEELREAFKLFDKDHDGYISIGELRRVLKSLG--------ERLSDEEVEKLLKEYDEDGDGEIDYEEFKKLIKDSPT 159 (160)
T ss_pred CcHHHHHHHHHHhCCCCCceecHHHHHHHHHhhc--------ccCCHHHHHHHHHhcCCCCCceEeHHHHHHHHhccCC
Confidence 7799999999999999999999999999997222 2334566777999999999999999999999987653
No 38
>PRK08345 cytochrome-c3 hydrogenase subunit gamma; Provisional
Probab=99.79 E-value=2.4e-18 Score=186.20 Aligned_cols=123 Identities=27% Similarity=0.429 Sum_probs=97.7
Q ss_pred ccceEEEEEEEecCCEEEEEE--EcCC---CcccCCCcEEEEEeccCCCCeeecCcccCCCC-CCeEEEEEEEcCCccHh
Q 003558 600 IKAVSIQKVAVYPGNVLALHM--SKPD---RFRYKSGQYMFVNCAAVSPFEWHPFSITSAPD-DDYLSVHIRTLGDWTRQ 673 (811)
Q Consensus 600 ~~~~~i~~v~~~~~~v~~l~l--~~p~---~~~~~pGQyv~l~~p~~s~~e~HPFSIas~p~-~~~l~~~Ik~~g~~T~~ 673 (811)
++.++|.+++.+++++..+++ ..|. .+.|+||||+.|++|..+ .|||||+|.|. ++.++|+||..|.+|+.
T Consensus 5 ~~~~~V~~~~~~t~d~~~~~l~~~~~~~~~~~~~~pGQ~v~l~~~~~~---~~pySias~p~~~~~l~l~Ik~~G~~S~~ 81 (289)
T PRK08345 5 LHDAKILEVYDLTEREKLFLLRFEDPELAESFTFKPGQFVQVTIPGVG---EVPISICSSPTRKGFFELCIRRAGRVTTV 81 (289)
T ss_pred ceeEEEEEEEecCCCCCEEEEEEeCccccCCCCcCCCCEEEEEcCCCC---ceeeEecCCCCCCCEEEEEEEeCChHHHH
Confidence 457899999999998555544 4442 477999999999998643 48999999985 57899999999999988
Q ss_pred HHHHhhhccCCCCCCCcccccccCCCCCCCCEEEEEcccCCCC-CCCCCCCeEEEEEeCcCHHHHHHHHHHHHHhc
Q 003558 674 LRTVFSEVCRPPPNGISGLLRAEGHNNPDFPRVLIDGPYGAPA-QDYKEYEVVLLVGLGIGATPMISIVKDIVNNM 748 (811)
Q Consensus 674 L~~~~~~~~~~~~~G~sg~~~~~~~~~~~~~~v~idGPyG~~~-~~~~~~~~vllIagGiGITP~lsil~~l~~~~ 748 (811)
|.+ + ++| ++|.|+||||.+. .+....+++||||||+||||++||+++++.+.
T Consensus 82 L~~-l-------~~G---------------d~v~v~gP~G~~f~~~~~~~~~~llIAgGtGIaP~~s~l~~~l~~~ 134 (289)
T PRK08345 82 IHR-L-------KEG---------------DIVGVRGPYGNGFPVDEMEGMDLLLIAGGLGMAPLRSVLLYAMDNR 134 (289)
T ss_pred HHh-C-------CCC---------------CEEEEeCCCCCCCCcccccCceEEEEecccchhHHHHHHHHHHhcC
Confidence 753 2 233 7899999999843 32233468999999999999999999988654
No 39
>cd06194 FNR_N-term_Iron_sulfur_binding Iron-sulfur binding ferredoxin reductase (FNR) proteins combine the FAD and NAD(P) binding regions of FNR with an N-terminal Iron-Sulfur binding cluster domain. Ferredoxin-NADP+ (oxido)reductase is an FAD-containing enzyme that catalyzes the reversible electron transfer between NADP(H) and electron carrier proteins such as ferredoxin and flavodoxin. Isoforms of these flavoproteins (i.e. having a non-covalently bound FAD as a prosthetic group) are present in chloroplasts, mitochondria, and bacteria in which they participate in a wide variety of redox metabolic pathways. The C-terminal domain contains most of the NADP(H) binding residues and the N-terminal domain interacts non-covalently with the isoalloxazine rings of the flavin molecule which lies largely in a large gap betweed the two domains. Ferredoxin-NADP+ reductase first accepts one electron from reduced ferredoxin to form a flavin semiquinone intermediate. The enzyme then accepts a second e
Probab=99.79 E-value=1.3e-18 Score=180.92 Aligned_cols=119 Identities=25% Similarity=0.375 Sum_probs=100.0
Q ss_pred EEEEEEecCCEEEEEEEcCCCcccCCCcEEEEEeccCCCCeeecCcccCCCCC-CeEEEEEEEc--CCccHhHHHHhhhc
Q 003558 605 IQKVAVYPGNVLALHMSKPDRFRYKSGQYMFVNCAAVSPFEWHPFSITSAPDD-DYLSVHIRTL--GDWTRQLRTVFSEV 681 (811)
Q Consensus 605 i~~v~~~~~~v~~l~l~~p~~~~~~pGQyv~l~~p~~s~~e~HPFSIas~p~~-~~l~~~Ik~~--g~~T~~L~~~~~~~ 681 (811)
|.+++.+++++++++++.|+.+.|+||||++|+++.. ..|||||+|.|.+ +.++|+||.. |.+|..|.+.+
T Consensus 1 V~~~~~~~~~~~~i~l~~~~~~~~~pGQ~v~l~~~~~---~~r~ySi~s~~~~~~~~~~~i~~~~~G~~s~~l~~~~--- 74 (222)
T cd06194 1 VVSLQRLSPDVLRVRLEPDRPLPYLPGQYVNLRRAGG---LARSYSPTSLPDGDNELEFHIRRKPNGAFSGWLGEEA--- 74 (222)
T ss_pred CceeeecCCCEEEEEEecCCCCCcCCCCEEEEEcCCC---CceeeecCCCCCCCCEEEEEEEeccCCccchHHHhcc---
Confidence 3567888999999999988888999999999999863 5699999999865 7899999987 56788776643
Q ss_pred cCCCCCCCcccccccCCCCCCCCEEEEEcccCCCCCCC-CCCCeEEEEEeCcCHHHHHHHHHHHHHhc
Q 003558 682 CRPPPNGISGLLRAEGHNNPDFPRVLIDGPYGAPAQDY-KEYEVVLLVGLGIGATPMISIVKDIVNNM 748 (811)
Q Consensus 682 ~~~~~~G~sg~~~~~~~~~~~~~~v~idGPyG~~~~~~-~~~~~vllIagGiGITP~lsil~~l~~~~ 748 (811)
++| ++|.|.||||.+.... ...+++|+||||+||||+++++++++...
T Consensus 75 ----~~G---------------~~v~i~gP~G~~~~~~~~~~~~~v~iagG~Giap~~~~l~~~~~~~ 123 (222)
T cd06194 75 ----RPG---------------HALRLQGPFGQAFYRPEYGEGPLLLVGAGTGLAPLWGIARAALRQG 123 (222)
T ss_pred ----CCC---------------CEEEEecCcCCeeccCCCCCCCEEEEecCcchhhHHHHHHHHHhcC
Confidence 233 8899999999987543 45688999999999999999999988653
No 40
>cd06192 DHOD_e_trans_like FAD/NAD binding domain (electron transfer subunit) of dihydroorotate dehydrogenase-like proteins. Dihydroorotate dehydrogenases (DHODs) catalyze the only redox reaction in pyrimidine de novo biosynthesis. They catalyze the oxidation of (S)-dihydroorotate to orotate coupled with the reduction of NAD+. In L. lactis, DHOD B (encoded by pyrDa) is co-expressed with pyrK and both gene products are required for full activity, as well as NAD binding. NAD(P) binding domain of ferredoxin reductase-like proteins catalyze electron transfer between an NAD(P)-binding domain of the alpha/beta class and a discrete (usually N-terminal) domain which vary in orientation with respect to the NAD(P) binding domain. The N-terminal domain may contain a flavin prosthetic group (as in flavoenzymes) or use flavin as a substrate. Ferredoxin is reduced in the final stage of photosystem I. The flavoprotein Ferredoxin-NADP+ reductase transfers electrons from reduced ferredoxin to FAD (formi
Probab=99.79 E-value=2.3e-18 Score=181.74 Aligned_cols=120 Identities=25% Similarity=0.414 Sum_probs=100.9
Q ss_pred EEEEEEecCCEEEEEEEcCC-CcccCCCcEEEEEeccCCCCeeecCcccCCC-CCCeEEEEEEEcCCccHhHHHHhhhcc
Q 003558 605 IQKVAVYPGNVLALHMSKPD-RFRYKSGQYMFVNCAAVSPFEWHPFSITSAP-DDDYLSVHIRTLGDWTRQLRTVFSEVC 682 (811)
Q Consensus 605 i~~v~~~~~~v~~l~l~~p~-~~~~~pGQyv~l~~p~~s~~e~HPFSIas~p-~~~~l~~~Ik~~g~~T~~L~~~~~~~~ 682 (811)
|++++.+++++.++++..|. .+.|+||||++|.++......+|||||+|.| ++++++|+||..|..|+.|.+ +
T Consensus 1 i~~~~~~t~~~~~l~l~~~~~~~~~~pGQ~v~l~~~~~~~~~~rpySi~s~~~~~~~l~l~i~~~G~~t~~l~~-~---- 75 (243)
T cd06192 1 IVKKEQLEPNLVLLTIKAPLAARLFRPGQFVFLRNFESPGLERIPLSLAGVDPEEGTISLLVEIRGPKTKLIAE-L---- 75 (243)
T ss_pred CceEEEecCCEEEEEEEccchhhcCCCCCeEEEecCCCCCceeeeeEeeecCCCCCEEEEEEEEcCchHHHHHh-C----
Confidence 35677889999999999876 4689999999999976555689999999987 568999999999999887753 2
Q ss_pred CCCCCCCcccccccCCCCCCCCEEEEEcccCCCCCCCCCCCeEEEEEeCcCHHHHHHHHHHHHHh
Q 003558 683 RPPPNGISGLLRAEGHNNPDFPRVLIDGPYGAPAQDYKEYEVVLLVGLGIGATPMISIVKDIVNN 747 (811)
Q Consensus 683 ~~~~~G~sg~~~~~~~~~~~~~~v~idGPyG~~~~~~~~~~~vllIagGiGITP~lsil~~l~~~ 747 (811)
++| +++.|.||||.+.......+++||||||+||||++++++++.++
T Consensus 76 ---~~G---------------~~l~i~gP~G~~~~~~~~~~~~lliagGtGiap~~~~l~~~~~~ 122 (243)
T cd06192 76 ---KPG---------------EKLDVMGPLGNGFEGPKKGGTVLLVAGGIGLAPLLPIAKKLAAN 122 (243)
T ss_pred ---CCC---------------CEEEEEccCCCCCccCCCCCEEEEEeCcccHHHHHHHHHHHHHC
Confidence 233 78999999998765434478999999999999999999999875
No 41
>PRK13289 bifunctional nitric oxide dioxygenase/dihydropteridine reductase 2; Provisional
Probab=99.79 E-value=3.3e-18 Score=193.65 Aligned_cols=176 Identities=17% Similarity=0.198 Sum_probs=129.5
Q ss_pred ccccceEEEEEEEecCCEEEEEEEcCC---CcccCCCcEEEEEeccCC--CCeeecCcccCCCCCCeEEEEEEEc--CCc
Q 003558 598 SSIKAVSIQKVAVYPGNVLALHMSKPD---RFRYKSGQYMFVNCAAVS--PFEWHPFSITSAPDDDYLSVHIRTL--GDW 670 (811)
Q Consensus 598 ~~~~~~~i~~v~~~~~~v~~l~l~~p~---~~~~~pGQyv~l~~p~~s--~~e~HPFSIas~p~~~~l~~~Ik~~--g~~ 670 (811)
..++.++|++++.+++++..+++..++ .+.|+||||+.|.++..+ ..++|||||+|.|+++.++|+||.. |..
T Consensus 152 ~~~~~~~V~~~~~~t~~~~~~~l~~~~~~~~~~~~pGQ~v~l~~~~~~~~~~~~R~ySias~p~~~~l~~~Vk~~~~G~~ 231 (399)
T PRK13289 152 RGWRDFRVVKKVPESEVITSFYLEPVDGGPVADFKPGQYLGVRLDPEGEEYQEIRQYSLSDAPNGKYYRISVKREAGGKV 231 (399)
T ss_pred CCcEEEEEEEEEECCCCEEEEEEEcCCCCcCCCCCCCCeEEEEEecCCccccceeEEEeeeCCCCCeEEEEEEECCCCee
Confidence 345678999999999999999999764 257999999999997433 2357999999999888999999998 788
Q ss_pred cHhHHHHhhhccCCCCCCCcccccccCCCCCCCCEEEEEcccCCCCCCCCCCCeEEEEEeCcCHHHHHHHHHHHHHhcc-
Q 003558 671 TRQLRTVFSEVCRPPPNGISGLLRAEGHNNPDFPRVLIDGPYGAPAQDYKEYEVVLLVGLGIGATPMISIVKDIVNNMK- 749 (811)
Q Consensus 671 T~~L~~~~~~~~~~~~~G~sg~~~~~~~~~~~~~~v~idGPyG~~~~~~~~~~~vllIagGiGITP~lsil~~l~~~~~- 749 (811)
|..|.+.+ ++| ++|.|.||||.+..+....+++|||||||||||++||++++++...
T Consensus 232 S~~L~~~l-------~~G---------------d~v~v~gP~G~f~l~~~~~~~~vlIagGtGIaP~~s~l~~~~~~~~~ 289 (399)
T PRK13289 232 SNYLHDHV-------NVG---------------DVLELAAPAGDFFLDVASDTPVVLISGGVGITPMLSMLETLAAQQPK 289 (399)
T ss_pred hHHHhhcC-------CCC---------------CEEEEEcCccccccCCCCCCcEEEEecCccHHHHHHHHHHHHhcCCC
Confidence 88887533 334 8899999999987654456899999999999999999999986432
Q ss_pred ----------cchhh-HHHHHHHhhhcCCCe-EEEEEcCCCCCCCcccC----ccccCCHHHHH
Q 003558 750 ----------AIEEE-EENDLENGRDTGVNT-TIIIIDNNYEPFFFWTQ----KKGPIQDKKSI 797 (811)
Q Consensus 750 ----------~~~~~-~~~el~~~~~~~~~~-~i~v~~~~~~~~~~w~g----~~G~i~~~~~~ 797 (811)
+.+++ +.+++.++..++.+. .+++++++.+. .|.+ ..|+++++...
T Consensus 290 ~~v~l~~~~r~~~~~~~~~eL~~l~~~~~~~~~~~~~s~~~~~--~~~~~~~~~~g~i~~~~l~ 351 (399)
T PRK13289 290 RPVHFIHAARNGGVHAFRDEVEALAARHPNLKAHTWYREPTEQ--DRAGEDFDSEGLMDLEWLE 351 (399)
T ss_pred CCEEEEEEeCChhhchHHHHHHHHHHhCCCcEEEEEECCCccc--cccCCcccccCcccHHHHH
Confidence 22233 345555555555453 33444443321 1333 46999876544
No 42
>cd06219 DHOD_e_trans_like1 FAD/NAD binding domain in the electron transfer subunit of dihydroorotate dehydrogenase-like proteins. Dihydroorotate dehydrogenases (DHODs) catalyze the only redox reaction in pyrimidine de novo biosynthesis. They catalyze the oxidation of (S)-dihydroorotate to orotate coupled with the reduction of NAD+. In L. lactis, DHOD B (encoded by pyrDa) is co-expressed with pyrK and both gene products are required for full activity, as well as NAD binding. NAD(P) binding domain of ferredoxin reductase-like proteins catalyze electron transfer between an NAD(P)-binding domain of the alpha/beta class and a discrete (usually N-terminal) domain which vary in orientation with respect to the NAD(P) binding domain. The N-terminal domain may contain a flavin prosthetic group, as in flavoenzymes, or use flavin as a substrate. Ferredoxin is reduced in the final stage of photosystem I. The flavoprotein Ferredoxin-NADP+ reductase transfers electrons from reduced ferredoxin to FAD,
Probab=99.79 E-value=2.6e-18 Score=181.99 Aligned_cols=161 Identities=24% Similarity=0.388 Sum_probs=119.9
Q ss_pred EEEEEEEecCCEEEEEEEcCCC-cccCCCcEEEEEeccCCCCeeecCcccCCC-CCCeEEEEEEEcCCccHhHHHHhhhc
Q 003558 604 SIQKVAVYPGNVLALHMSKPDR-FRYKSGQYMFVNCAAVSPFEWHPFSITSAP-DDDYLSVHIRTLGDWTRQLRTVFSEV 681 (811)
Q Consensus 604 ~i~~v~~~~~~v~~l~l~~p~~-~~~~pGQyv~l~~p~~s~~e~HPFSIas~p-~~~~l~~~Ik~~g~~T~~L~~~~~~~ 681 (811)
+|++++.++++++.+++..|+. ..|+||||++|+++.. .++|||||+|+| +++.++|+||..|+.|..|.+ +
T Consensus 2 ~v~~~~~~t~d~~~~~l~~~~~~~~~~pGQf~~l~~~~~--~~~~pySi~s~~~~~~~~~~~vk~~G~~t~~l~~-l--- 75 (248)
T cd06219 2 KILEKEELAPNVKLFEIEAPLIAKKAKPGQFVIVRADEK--GERIPLTIADWDPEKGTITIVVQVVGKSTRELAT-L--- 75 (248)
T ss_pred EEEEEEEeCCCeEEEEEEChhhhccCCCCcEEEEEcCCC--CCccceEeEEEcCCCCEEEEEEEeCCchHHHHHh-c---
Confidence 6788899999999999998763 5799999999998643 367999999986 568999999999998877743 2
Q ss_pred cCCCCCCCcccccccCCCCCCCCEE-EEEcccCCCCCCCCCCCeEEEEEeCcCHHHHHHHHHHHHHhcc---------cc
Q 003558 682 CRPPPNGISGLLRAEGHNNPDFPRV-LIDGPYGAPAQDYKEYEVVLLVGLGIGATPMISIVKDIVNNMK---------AI 751 (811)
Q Consensus 682 ~~~~~~G~sg~~~~~~~~~~~~~~v-~idGPyG~~~~~~~~~~~vllIagGiGITP~lsil~~l~~~~~---------~~ 751 (811)
++| +++ .|+||||.+.. ....+++||||||+||||++|+++++....+ +.
T Consensus 76 ----~~G---------------~~v~~i~gP~G~~~~-~~~~~~~lliagG~GiaP~~~~l~~~~~~~~~v~l~~~~r~~ 135 (248)
T cd06219 76 ----EEG---------------DKIHDVVGPLGKPSE-IENYGTVVFVGGGVGIAPIYPIAKALKEAGNRVITIIGARTK 135 (248)
T ss_pred ----CCC---------------CEeeeeecCCCCCee-cCCCCeEEEEeCcccHHHHHHHHHHHHHcCCeEEEEEEcCCH
Confidence 233 778 69999999864 3456899999999999999999999886432 22
Q ss_pred hhhH-HHHHHHhhhcCCCeEEEEEcCCCCCCCcccCccccCCHHHHHHhh
Q 003558 752 EEEE-ENDLENGRDTGVNTTIIIIDNNYEPFFFWTQKKGPIQDKKSILLL 800 (811)
Q Consensus 752 ~~~~-~~el~~~~~~~~~~~i~v~~~~~~~~~~w~g~~G~i~~~~~~~~~ 800 (811)
++++ .+|+.++.. . ++++.+ +. |.|..|++++.+.+.+.
T Consensus 136 ~~~~~~~el~~l~~-~----~~~~~~--~~---~~~~~g~v~~~l~~~~~ 175 (248)
T cd06219 136 DLVILEDEFRAVSD-E----LIITTD--DG---SYGEKGFVTDPLKELIE 175 (248)
T ss_pred HHhhhHHHHHhhcC-e----EEEEeC--CC---CCCccccchHHHHHHHh
Confidence 2333 344444322 1 222222 33 77888999887766553
No 43
>PLN03116 ferredoxin--NADP+ reductase; Provisional
Probab=99.79 E-value=2.7e-18 Score=187.33 Aligned_cols=171 Identities=18% Similarity=0.157 Sum_probs=125.4
Q ss_pred cceEEEEEEEec-----CCEEEEEEEcCCCcccCCCcEEEEEeccCC------CCeeecCcccCCCCC-----CeEEEEE
Q 003558 601 KAVSIQKVAVYP-----GNVLALHMSKPDRFRYKSGQYMFVNCAAVS------PFEWHPFSITSAPDD-----DYLSVHI 664 (811)
Q Consensus 601 ~~~~i~~v~~~~-----~~v~~l~l~~p~~~~~~pGQyv~l~~p~~s------~~e~HPFSIas~p~~-----~~l~~~I 664 (811)
+.++|++++.++ +++.+|++..|..+.|+||||+.|.+|... ...+|+|||+|+|.+ ..++|+|
T Consensus 25 ~~~~V~~i~~~~~p~~~~~v~~l~l~~~~~~~f~aGQy~~l~~~~~~~~~~g~~~~~R~YSIaS~p~~~~~~~~~lel~V 104 (307)
T PLN03116 25 YTATIVSVERIVGPKAPGETCHIVIDHGGNVPYWEGQSYGVIPPGTNPKKPGAPHNVRLYSIASTRYGDDFDGKTASLCV 104 (307)
T ss_pred EEEEEEeeEEcccCCCCCceEEEEEecCCCCceecCceEeeeCCCCChhhcCCcCCceeEEecCCCCCcCCCCCEEEEEE
Confidence 478899999997 899999999988999999999999877421 124799999999832 2799999
Q ss_pred EEc---------------CCccHhHHHHhhhccCCCCCCCcccccccCCCCCCCCEEEEEcccCCCCCCC--CCCCeEEE
Q 003558 665 RTL---------------GDWTRQLRTVFSEVCRPPPNGISGLLRAEGHNNPDFPRVLIDGPYGAPAQDY--KEYEVVLL 727 (811)
Q Consensus 665 k~~---------------g~~T~~L~~~~~~~~~~~~~G~sg~~~~~~~~~~~~~~v~idGPyG~~~~~~--~~~~~vll 727 (811)
|.. |-.|..|.+ + ++| +.|.|.||+|.+.... ...+++||
T Consensus 105 r~~~~~~~~~~~~~~~~~G~~S~~L~~-l-------~~G---------------d~v~v~gP~G~f~~~~~~~~~~~~vl 161 (307)
T PLN03116 105 RRAVYYDPETGKEDPAKKGVCSNFLCD-A-------KPG---------------DKVQITGPSGKVMLLPEEDPNATHIM 161 (307)
T ss_pred EEEEEecCCcCCCCCccCcchhhhHhh-C-------CCC---------------CEEEEEEecCCceeCCCCCCCCcEEE
Confidence 975 445555554 3 333 8999999999986422 34468999
Q ss_pred EEeCcCHHHHHHHHHHHHHhcc----------------cchhh-HHHHHHHhhhcCC-Ce-EEEEEcCCCCCCCcccCcc
Q 003558 728 VGLGIGATPMISIVKDIVNNMK----------------AIEEE-EENDLENGRDTGV-NT-TIIIIDNNYEPFFFWTQKK 788 (811)
Q Consensus 728 IagGiGITP~lsil~~l~~~~~----------------~~~~~-~~~el~~~~~~~~-~~-~i~v~~~~~~~~~~w~g~~ 788 (811)
||||+||||++||+++++.... +.+++ +.+++.++..... +. .+++.+++.+. |.|.+
T Consensus 162 IAgGtGIaP~~sml~~~l~~~~~~~~~~~~v~L~~g~R~~~d~~~~deL~~l~~~~~~~~~~~~~~sr~~~~---~~g~~ 238 (307)
T PLN03116 162 VATGTGIAPFRGFLRRMFMEDVPAFKFGGLAWLFLGVANSDSLLYDDEFERYLKDYPDNFRYDYALSREQKN---KKGGK 238 (307)
T ss_pred EecCccHHHHHHHHHHHHhhccccccCCCcEEEEEecCCcccchHHHHHHHHHHhCCCcEEEEEEEccCCcc---cCCCc
Confidence 9999999999999999875431 12223 4455555555554 43 34455666666 88888
Q ss_pred ccCCHHHHH
Q 003558 789 GPIQDKKSI 797 (811)
Q Consensus 789 G~i~~~~~~ 797 (811)
|++++.+.+
T Consensus 239 g~v~~~l~~ 247 (307)
T PLN03116 239 MYVQDKIEE 247 (307)
T ss_pred cchhhHHHH
Confidence 999876544
No 44
>cd06218 DHOD_e_trans FAD/NAD binding domain in the electron transfer subunit of dihydroorotate dehydrogenase. Dihydroorotate dehydrogenases (DHODs) catalyze the only redox reaction in pyrimidine de novo biosynthesis. They catalyze the oxidation of (S)-dihydroorotate to orotate coupled with the reduction of NAD+. In L. lactis, DHOD B (encoded by pyrDa) is co-expressed with pyrK and both gene products are required for full activity, as well as 3 cofactors: FMN, FAD, and an [2Fe-2S] cluster.
Probab=99.79 E-value=2.4e-18 Score=181.99 Aligned_cols=164 Identities=20% Similarity=0.314 Sum_probs=121.2
Q ss_pred EEEEEEecCCEEEEEEEcCC-CcccCCCcEEEEEecc-CCCCeeecCcccCCC-CCCeEEEEEEEcCCccHhHHHHhhhc
Q 003558 605 IQKVAVYPGNVLALHMSKPD-RFRYKSGQYMFVNCAA-VSPFEWHPFSITSAP-DDDYLSVHIRTLGDWTRQLRTVFSEV 681 (811)
Q Consensus 605 i~~v~~~~~~v~~l~l~~p~-~~~~~pGQyv~l~~p~-~s~~e~HPFSIas~p-~~~~l~~~Ik~~g~~T~~L~~~~~~~ 681 (811)
|.+++.+++++.+|++..|. ...|+||||+.|.+|. .+++.+|||||+|.| +++.++|+||..|.+|+.|.+ +
T Consensus 1 V~~~~~~t~~v~~l~l~~~~~~~~~~pGQ~v~l~~~~~~~~~~~R~ySi~s~~~~~~~l~l~v~~~G~~s~~l~~-l--- 76 (246)
T cd06218 1 VLSNREIADDIYRLVLEAPEIAAAAKPGQFVMLRVPDGSDPLLRRPISIHDVDPEEGTITLLYKVVGKGTRLLSE-L--- 76 (246)
T ss_pred CcceeEecCCeEEEEEeCcchhccCCCCcEEEEEeCCCCCCcCCCceEeeeccCCCCEEEEEEEEECcchHHHhc-C---
Confidence 35678899999999999887 6789999999999986 356789999999988 478999999999999877643 2
Q ss_pred cCCCCCCCcccccccCCCCCCCCEEEEEcccCCCCCCCCCCCeEEEEEeCcCHHHHHHHHHHHHHhc---------ccch
Q 003558 682 CRPPPNGISGLLRAEGHNNPDFPRVLIDGPYGAPAQDYKEYEVVLLVGLGIGATPMISIVKDIVNNM---------KAIE 752 (811)
Q Consensus 682 ~~~~~~G~sg~~~~~~~~~~~~~~v~idGPyG~~~~~~~~~~~vllIagGiGITP~lsil~~l~~~~---------~~~~ 752 (811)
++| ++|.|.||||.+.......+++||||||+||||++|+++++.... ++.+
T Consensus 77 ----~~G---------------d~v~i~gP~G~~~~~~~~~~~~vlIagGtGIaP~~s~l~~~~~~~~~v~l~~~~r~~~ 137 (246)
T cd06218 77 ----KAG---------------DELDVLGPLGNGFDLPDDDGKVLLVGGGIGIAPLLFLAKQLAERGIKVTVLLGFRSAD 137 (246)
T ss_pred ----CCC---------------CEEEEEecCCCCcCCCCCCCcEEEEecccCHHHHHHHHHHHHhcCCceEEEEEccchh
Confidence 233 889999999974332335789999999999999999999998632 2233
Q ss_pred hhHHHHHHHhhhcCCCeEEEEEcCCCCCCCcccCccccCCHHHHHHhh
Q 003558 753 EEEENDLENGRDTGVNTTIIIIDNNYEPFFFWTQKKGPIQDKKSILLL 800 (811)
Q Consensus 753 ~~~~~el~~~~~~~~~~~i~v~~~~~~~~~~w~g~~G~i~~~~~~~~~ 800 (811)
+.++.+.++.... + +++..+ +. |.+.+|++++.+.+...
T Consensus 138 d~~~~~eL~~l~~--~--~~~~~~--~~---~~~~~g~v~~~l~~~~~ 176 (246)
T cd06218 138 DLFLVEEFEALGA--E--VYVATD--DG---SAGTKGFVTDLLKELLA 176 (246)
T ss_pred hhhhHHHHHhhCC--c--EEEEcC--CC---CCCcceehHHHHHHHhh
Confidence 3343333332211 2 233332 23 67888999987665544
No 45
>PRK06222 ferredoxin-NADP(+) reductase subunit alpha; Reviewed
Probab=99.79 E-value=2.5e-18 Score=185.28 Aligned_cols=163 Identities=21% Similarity=0.346 Sum_probs=120.5
Q ss_pred eEEEEEEEecCCEEEEEEEcCC-CcccCCCcEEEEEeccCCCCeeecCcccCCC-CCCeEEEEEEEcCCccHhHHHHhhh
Q 003558 603 VSIQKVAVYPGNVLALHMSKPD-RFRYKSGQYMFVNCAAVSPFEWHPFSITSAP-DDDYLSVHIRTLGDWTRQLRTVFSE 680 (811)
Q Consensus 603 ~~i~~v~~~~~~v~~l~l~~p~-~~~~~pGQyv~l~~p~~s~~e~HPFSIas~p-~~~~l~~~Ik~~g~~T~~L~~~~~~ 680 (811)
++|++++.+++++..+++..|. ...++||||+.|+++..+ ++|||||+|.| +++.++|+||..|..|+.|.+ +
T Consensus 2 ~~I~~~~~~t~~~~~l~l~~~~~~~~~~pGQfv~l~~~~~~--~~rpySias~~~~~~~i~l~vk~~G~~T~~L~~-l-- 76 (281)
T PRK06222 2 YKILEKEELAPNVFLMEIEAPRVAKKAKPGQFVIVRIDEKG--ERIPLTIADYDREKGTITIVFQAVGKSTRKLAE-L-- 76 (281)
T ss_pred cEEEEEEEecCCEEEEEEeCchhhccCCCCeEEEEEeCCCC--CceeeEeeEEcCCCCEEEEEEEeCCcHHHHHhc-C--
Confidence 4688899999999999998876 357999999999997543 57999999976 567899999999999988763 2
Q ss_pred ccCCCCCCCcccccccCCCCCCCCEE-EEEcccCCCCCCCCCCCeEEEEEeCcCHHHHHHHHHHHHHhcc---------c
Q 003558 681 VCRPPPNGISGLLRAEGHNNPDFPRV-LIDGPYGAPAQDYKEYEVVLLVGLGIGATPMISIVKDIVNNMK---------A 750 (811)
Q Consensus 681 ~~~~~~~G~sg~~~~~~~~~~~~~~v-~idGPyG~~~~~~~~~~~vllIagGiGITP~lsil~~l~~~~~---------~ 750 (811)
++| +.+ .|.||||.+.. ....+++||||||+||||++++++++.++.. +
T Consensus 77 -----~~G---------------d~v~~i~GP~G~~~~-~~~~~~~llIaGGiGiaPl~~l~~~l~~~~~~v~l~~g~r~ 135 (281)
T PRK06222 77 -----KEG---------------DSILDVVGPLGKPSE-IEKFGTVVCVGGGVGIAPVYPIAKALKEAGNKVITIIGARN 135 (281)
T ss_pred -----CCC---------------CEEeeEEcCCCCCcc-cCCCCeEEEEeCcCcHHHHHHHHHHHHHCCCeEEEEEecCC
Confidence 234 788 69999999764 3446799999999999999999999876432 2
Q ss_pred chhhHHHHHHHhhhcCCCeEEEEEcCCCCCCCcccCccccCCHHHHHHhh
Q 003558 751 IEEEEENDLENGRDTGVNTTIIIIDNNYEPFFFWTQKKGPIQDKKSILLL 800 (811)
Q Consensus 751 ~~~~~~~el~~~~~~~~~~~i~v~~~~~~~~~~w~g~~G~i~~~~~~~~~ 800 (811)
.+++++.+.++.... .++++.+ ++ |.|.+|++++.+.+.+.
T Consensus 136 ~~d~~~~~el~~~~~----~~~v~~~--d~---~~g~~G~v~~~l~~~~~ 176 (281)
T PRK06222 136 KDLLILEDEMKAVSD----ELYVTTD--DG---SYGRKGFVTDVLKELLE 176 (281)
T ss_pred HHHhhcHHHHHhhCC----eEEEEcC--CC---CcCcccchHHHHHHHhh
Confidence 222333333322211 1233332 34 78999999987665544
No 46
>PTZ00274 cytochrome b5 reductase; Provisional
Probab=99.78 E-value=6e-18 Score=185.02 Aligned_cols=175 Identities=12% Similarity=0.112 Sum_probs=130.4
Q ss_pred hccccceEEEEEEEecCCEEEEEEEcCC--CcccCCCcEEEEEeccC---CCCeeecCcccCCCC-CCeEEEEEEEcC--
Q 003558 597 RSSIKAVSIQKVAVYPGNVLALHMSKPD--RFRYKSGQYMFVNCAAV---SPFEWHPFSITSAPD-DDYLSVHIRTLG-- 668 (811)
Q Consensus 597 r~~~~~~~i~~v~~~~~~v~~l~l~~p~--~~~~~pGQyv~l~~p~~---s~~e~HPFSIas~p~-~~~l~~~Ik~~g-- 668 (811)
...++.++|.+++.+++++.+++|..|. .+.|+||||+.+.++.. ....+|||||+|.|+ +++++|+||..+
T Consensus 49 ~~~~~~~~V~~i~~~t~dv~~f~f~lp~~~~~~f~pGQ~l~l~~~~~~~~~~~~~R~YSiaS~p~~~~~le~~IK~~~~G 128 (325)
T PTZ00274 49 SQRYEPYQLGEVIPITHDTALFRFLLHSEEEFNLKPCSTLQACYKYGVQPMDQCQRFYTPVTANHTKGYFDIIVKRKKDG 128 (325)
T ss_pred CCceEEEEEEEEEEeCCCeEEEEEeCCcccccCCCCccEEEEEEecCCCCCCEEEEeeecCCCCCCCCeEEEEEEEcCCC
Confidence 3567889999999999999999998765 68999999999877632 123689999999995 578999999964
Q ss_pred CccHhHHHHhhhccCCCCCCCcccccccCCCCCCCCEEEEEcccCCCCCCCCCCCeEEEEEeCcCHHHHHHHHHHHHHhc
Q 003558 669 DWTRQLRTVFSEVCRPPPNGISGLLRAEGHNNPDFPRVLIDGPYGAPAQDYKEYEVVLLVGLGIGATPMISIVKDIVNNM 748 (811)
Q Consensus 669 ~~T~~L~~~~~~~~~~~~~G~sg~~~~~~~~~~~~~~v~idGPyG~~~~~~~~~~~vllIagGiGITP~lsil~~l~~~~ 748 (811)
..|..|.+ + ++| +.|.|.||+|.+..+....+++|||||||||||++||+++++++.
T Consensus 129 ~~S~~L~~-l-------k~G---------------d~v~v~GP~f~~~~~~~~~~~lvlIAGGsGITP~lsmlr~~l~~~ 185 (325)
T PTZ00274 129 LMTNHLFG-M-------HVG---------------DKLLFRSVTFKIQYRPNRWKHVGMIAGGTGFTPMLQIIRHSLTEP 185 (325)
T ss_pred cccHHHhc-C-------CCC---------------CEEEEeCCeeecccCCCCCceEEEEeCCcchhHHHHHHHHHHhcc
Confidence 45877764 3 344 899999998876544445579999999999999999999988642
Q ss_pred -----------------ccchhh-HHHHHHHhhhcCCC-e-EEEEEcCC--CCCCCcccCccccCCHHHHH
Q 003558 749 -----------------KAIEEE-EENDLENGRDTGVN-T-TIIIIDNN--YEPFFFWTQKKGPIQDKKSI 797 (811)
Q Consensus 749 -----------------~~~~~~-~~~el~~~~~~~~~-~-~i~v~~~~--~~~~~~w~g~~G~i~~~~~~ 797 (811)
++.+++ +.+++.++..+..+ . .+++++++ .+. |.|..|+|+++...
T Consensus 186 ~~~~~~~~~~v~Llyg~R~~~di~~~~eL~~La~~~~~~f~v~~~ls~~~~~~~---w~g~~G~V~~~ll~ 253 (325)
T PTZ00274 186 WDSGEVDRTKLSFLFCNRTERHILLKGLFDDLARRYSNRFKVYYTIDQAVEPDK---WNHFLGYVTKEMVR 253 (325)
T ss_pred cccccCCCCeEEEEEEcCCHHHhhHHHHHHHHHHhCCCcEEEEEEeCCCCcccC---CCCCCCccCHHHHH
Confidence 112223 44555555555553 3 34455533 344 99999999988644
No 47
>TIGR02911 sulfite_red_B sulfite reductase, subunit B. Members of this protein family include the B subunit, one of three subunits, of the anaerobic sulfite reductase of Salmonella, and close homologs from various Clostridum species, where the three-gene neighborhood is preserved. Two such gene clusters are found in Clostridium perfringens, but it may be that these sets of genes correspond to the distinct assimilatory and dissimilatory forms as seen in Clostridium pasteurianum.
Probab=99.78 E-value=4.1e-18 Score=181.74 Aligned_cols=163 Identities=22% Similarity=0.342 Sum_probs=121.3
Q ss_pred ceEEEEEEEecCCEEEEEEEcCCCcccCCCcEEEEEeccCCCCeeecCcccCCCCCCeEEEEEEEcCCccHhHHHHhhhc
Q 003558 602 AVSIQKVAVYPGNVLALHMSKPDRFRYKSGQYMFVNCAAVSPFEWHPFSITSAPDDDYLSVHIRTLGDWTRQLRTVFSEV 681 (811)
Q Consensus 602 ~~~i~~v~~~~~~v~~l~l~~p~~~~~~pGQyv~l~~p~~s~~e~HPFSIas~p~~~~l~~~Ik~~g~~T~~L~~~~~~~ 681 (811)
.++|+++...+++++.+++..| +.|+||||+.|.+|.. ..|||||++. +++.++|+||..|+.|..|.+ +
T Consensus 7 ~~~v~~~~~~t~~~~~~~~~~~--~~~~pGQ~v~l~~~~~---~~~pySi~~~-~~~~l~~~Vk~~G~~S~~L~~-l--- 76 (261)
T TIGR02911 7 KSEILEIIKHTDIEYTFRMSYD--GPVKPGQFFEVSLPKY---GEAPISVSGI-GEGYIDLTIRRVGKVTDEVFT-L--- 76 (261)
T ss_pred eEEEEEEeeccCCEEEEEcCCC--CCCCCCcEEEEEecCC---CccceecCCC-CCCeEEEEEEeCchhhHHHHc-C---
Confidence 5788899999999999999765 6799999999999864 3589999985 578899999999999987753 2
Q ss_pred cCCCCCCCcccccccCCCCCCCCEEEEEcccCC-CCCCCCCCCeEEEEEeCcCHHHHHHHHHHHHHhccc----------
Q 003558 682 CRPPPNGISGLLRAEGHNNPDFPRVLIDGPYGA-PAQDYKEYEVVLLVGLGIGATPMISIVKDIVNNMKA---------- 750 (811)
Q Consensus 682 ~~~~~~G~sg~~~~~~~~~~~~~~v~idGPyG~-~~~~~~~~~~vllIagGiGITP~lsil~~l~~~~~~---------- 750 (811)
++| ++|.|.||||. +..+....+++||||||+||||++||+++++++...
T Consensus 77 ----~~G---------------d~v~i~gP~G~~f~~~~~~~~~~llIAgGtGIaP~~sil~~l~~~~~~~~~v~L~~~~ 137 (261)
T TIGR02911 77 ----KEG---------------DNLFLRGPYGNGFDVDNYKHKELVVVAGGTGVAPVKGVVEYFVKNPKEIKSLNLILGF 137 (261)
T ss_pred ----CCC---------------CEEEEecCCCCCcccCccCCceEEEEecccCcHHHHHHHHHHHhCcccCceEEEEEec
Confidence 233 88999999998 543333567999999999999999999998865321
Q ss_pred --chhhH-HHHHHHhhhcCCCeEEEEEcCCCCCCCcccCccccCCHHHHHH
Q 003558 751 --IEEEE-ENDLENGRDTGVNTTIIIIDNNYEPFFFWTQKKGPIQDKKSIL 798 (811)
Q Consensus 751 --~~~~~-~~el~~~~~~~~~~~i~v~~~~~~~~~~w~g~~G~i~~~~~~~ 798 (811)
.++++ .+++.++. ...+..+ ++..+.++ |.+..|++++.+.+.
T Consensus 138 r~~~~~~~~~eL~~l~-~~~~~~~-~~~~~~~~---~~~~~g~v~~~l~~~ 183 (261)
T TIGR02911 138 KTPDDILFKEDIAEWK-GNINLTL-TLDEAEED---YKGNIGLVTKYIPEL 183 (261)
T ss_pred CCHHHhhHHHHHHHHH-hcCcEEE-EEcCCCCC---CcCCeeccCHhHHhc
Confidence 22233 34444443 3344333 34444455 888999999766543
No 48
>PF08022 FAD_binding_8: FAD-binding domain; InterPro: IPR013112 This FAD binding domain is associated with ferric reductase NAD binding proteins and the heavy chain of Cytochrome b-245.; GO: 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 3A1F_A.
Probab=99.78 E-value=9.7e-21 Score=173.59 Aligned_cols=100 Identities=39% Similarity=0.819 Sum_probs=7.2
Q ss_pred cceEEEEEEEecCCEEEEEEEcCCC-cccCCCcEEEEEeccCC--CCeeecCcccCCCCCCeEEEEEEEcCCccHhHHHH
Q 003558 601 KAVSIQKVAVYPGNVLALHMSKPDR-FRYKSGQYMFVNCAAVS--PFEWHPFSITSAPDDDYLSVHIRTLGDWTRQLRTV 677 (811)
Q Consensus 601 ~~~~i~~v~~~~~~v~~l~l~~p~~-~~~~pGQyv~l~~p~~s--~~e~HPFSIas~p~~~~l~~~Ik~~g~~T~~L~~~ 677 (811)
.++++++++.+++++++|++..|.. ++|+||||+||++|..+ .||||||||+|+|+++.++++||..||||++|.+.
T Consensus 2 ~~~~~~~v~~~~~~~v~i~i~~~~~~~~~~pGq~v~l~~p~~s~~~~q~HPFTIas~~~~~~i~l~ik~~g~~T~~L~~~ 81 (105)
T PF08022_consen 2 FNVRIASVELLPDDVVEITIPKPSSPFKWKPGQYVFLSFPSISKWFWQWHPFTIASSPEDNSITLIIKARGGWTKRLYEH 81 (105)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred CcEEEEEEEEcCCCEEEEEEECCCCCCCCCCceEEEEEEcCcCcCcccccccEeeccCCCCEEEEEEEeCCCchHHHHHH
Confidence 3577889999999999999999886 99999999999999999 56999999999999999999999999999999988
Q ss_pred hhhccCCCCCCCcccccccCCCCCCCCEEEEEcccCCC
Q 003558 678 FSEVCRPPPNGISGLLRAEGHNNPDFPRVLIDGPYGAP 715 (811)
Q Consensus 678 ~~~~~~~~~~G~sg~~~~~~~~~~~~~~v~idGPyG~~ 715 (811)
+.+.... .....++.||||||.+
T Consensus 82 ~~~~~~~---------------~~~~~~v~idGPYG~~ 104 (105)
T PF08022_consen 82 LSESPSK---------------QGNRLRVFIDGPYGAP 104 (105)
T ss_dssp ------------------------------TTSTTSHH
T ss_pred Hhhhccc---------------CCCceEEEEECCCCCC
Confidence 6542100 1124789999999974
No 49
>COG1018 Hmp Flavodoxin reductases (ferredoxin-NADPH reductases) family 1 [Energy production and conversion]
Probab=99.77 E-value=8.9e-18 Score=178.43 Aligned_cols=129 Identities=23% Similarity=0.426 Sum_probs=113.3
Q ss_pred cccceEEEEEEEecCCEEEEEEEcCCCcc--cCCCcEEEEEeccCCCCeeecCcccCCCCCC-eEEEEEEEc--CCccHh
Q 003558 599 SIKAVSIQKVAVYPGNVLALHMSKPDRFR--YKSGQYMFVNCAAVSPFEWHPFSITSAPDDD-YLSVHIRTL--GDWTRQ 673 (811)
Q Consensus 599 ~~~~~~i~~v~~~~~~v~~l~l~~p~~~~--~~pGQyv~l~~p~~s~~e~HPFSIas~p~~~-~l~~~Ik~~--g~~T~~ 673 (811)
.+..++|.+++..+++++++++..|.+.. |+||||+.|.++..+...+|.|||+|+|.++ .+.|.||+. |..|+.
T Consensus 4 ~~~~~~V~~v~~~t~di~sf~l~~~~g~~~~f~pGQ~i~v~l~~~~~~~~R~YSl~s~p~~~~~~~isVk~~~~G~~S~~ 83 (266)
T COG1018 4 GFRRVTVTSVEPETDDVFSFTLEPPDGLRLDFEPGQYITVGLPNGGEPLLRAYSLSSAPDEDSLYRISVKREDGGGGSNW 83 (266)
T ss_pred ceEEEEEEEEEEecCceEEEEEEcCCCCccccCCCCeEEEEecCCCceeeEEEEeccCCCCCceEEEEEEEeCCCcccHH
Confidence 35688999999999999999999998774 9999999999998877899999999999775 899999998 678888
Q ss_pred HHHHhhhccCCCCCCCcccccccCCCCCCCCEEEEEcccCCCCCCCCCCCeEEEEEeCcCHHHHHHHHHHHHHhcc
Q 003558 674 LRTVFSEVCRPPPNGISGLLRAEGHNNPDFPRVLIDGPYGAPAQDYKEYEVVLLVGLGIGATPMISIVKDIVNNMK 749 (811)
Q Consensus 674 L~~~~~~~~~~~~~G~sg~~~~~~~~~~~~~~v~idGPyG~~~~~~~~~~~vllIagGiGITP~lsil~~l~~~~~ 749 (811)
|++.+ ++| ++|.|.+|.|.|..+....++++||||||||||++||++++....+
T Consensus 84 Lh~~l-------k~G---------------d~l~v~~P~G~F~l~~~~~~~~llla~G~GITP~lSml~~~~~~~~ 137 (266)
T COG1018 84 LHDHL-------KVG---------------DTLEVSAPAGDFVLDDLPERKLLLLAGGIGITPFLSMLRTLLDRGP 137 (266)
T ss_pred HHhcC-------CCC---------------CEEEEecCCCCccCCCCCCCcEEEEeccccHhHHHHHHHHHHHhCC
Confidence 88655 344 8999999999998766555589999999999999999999888764
No 50
>PTZ00319 NADH-cytochrome B5 reductase; Provisional
Probab=99.77 E-value=7.1e-18 Score=183.30 Aligned_cols=175 Identities=17% Similarity=0.311 Sum_probs=127.0
Q ss_pred ccccceEEEEEEEecCCEEEEEEEcCC---CcccCCCcEEEEEeccCCC----CeeecCcccCCCC-CCeEEEEEEEc--
Q 003558 598 SSIKAVSIQKVAVYPGNVLALHMSKPD---RFRYKSGQYMFVNCAAVSP----FEWHPFSITSAPD-DDYLSVHIRTL-- 667 (811)
Q Consensus 598 ~~~~~~~i~~v~~~~~~v~~l~l~~p~---~~~~~pGQyv~l~~p~~s~----~e~HPFSIas~p~-~~~l~~~Ik~~-- 667 (811)
..++.++|++++.+++++..+++..+. .+.|+||||+.|+++..+. ...||||++|.|. ++.++|+||..
T Consensus 31 ~~~~~~~v~~~~~~s~d~~~~~~~~~~~~~~~~~~pGQfi~l~~~~~~~~~~~~~~R~YS~~s~~~~~~~i~~~Ik~~~~ 110 (300)
T PTZ00319 31 DMFQHFKLIKKTEVTHDTFIFRFALHSPTQRLGLPIGQHIVFRCDCTTPGKPETVQHSYTPISSDDEKGYVDFLIKVYFK 110 (300)
T ss_pred CceEEEEEEEEEEcCCCceEEEEECCCCcccCCCccceEEEEEEEeCCCCccceEEeeeccCCCcccCCEEEEEEEEecc
Confidence 445678999999999999999998643 2679999999999975321 4689999999884 57899999986
Q ss_pred ---------CCccHhHHHHhhhccCCCCCCCcccccccCCCCCCCCEEEEEcccCCCCCCC---------------CCCC
Q 003558 668 ---------GDWTRQLRTVFSEVCRPPPNGISGLLRAEGHNNPDFPRVLIDGPYGAPAQDY---------------KEYE 723 (811)
Q Consensus 668 ---------g~~T~~L~~~~~~~~~~~~~G~sg~~~~~~~~~~~~~~v~idGPyG~~~~~~---------------~~~~ 723 (811)
|..|+.|.. + ++| +.|.|.||+|.+.... ...+
T Consensus 111 ~~~~~~~~~G~~S~~L~~-l-------~~G---------------d~v~i~gP~G~f~~~~~~~~~~~~~~~~~~~~~~~ 167 (300)
T PTZ00319 111 GVHPSFPNGGRLSQHLYH-M-------KLG---------------DKIEMRGPVGKFEYLGNGTYTVHKGKGGLKTMHVD 167 (300)
T ss_pred CCCCCCCCCCChhhhhhc-C-------CCC---------------CEEEEEccceeeEecCCcceeeccccccccccccc
Confidence 677777742 2 344 8999999999874321 1235
Q ss_pred eEEEEEeCcCHHHHHHHHHHHHHhcc------------cchhhH-HHHHHHhhhcCCCeEE-EEEcC-CCCCCCcccCcc
Q 003558 724 VVLLVGLGIGATPMISIVKDIVNNMK------------AIEEEE-ENDLENGRDTGVNTTI-IIIDN-NYEPFFFWTQKK 788 (811)
Q Consensus 724 ~vllIagGiGITP~lsil~~l~~~~~------------~~~~~~-~~el~~~~~~~~~~~i-~v~~~-~~~~~~~w~g~~ 788 (811)
+++|||||+||||++||+++++.+.. +.++++ .+++.+ .....+..+ ++.++ +.+. |.|..
T Consensus 168 ~illIAgGtGIaP~~sml~~l~~~~~~~~~i~liyg~r~~~dl~~~~eL~~-~~~~~~~~~~~~~~~~~~~~---~~~~~ 243 (300)
T PTZ00319 168 AFAMIAGGTGITPMLQIIHAIKKNKEDRTKVFLVYANQTEDDILLRKELDE-AAKDPRFHVWYTLDREATPE---WKYGT 243 (300)
T ss_pred eEEEEecCcccCHHHHHHHHHHhCCCCCceEEEEEecCCHHHhhHHHHHHH-HhhCCCEEEEEEECCCCCCC---ccccc
Confidence 89999999999999999999986532 122233 445544 444445443 34443 4445 99999
Q ss_pred ccCCHHHHHHh
Q 003558 789 GPIQDKKSILL 799 (811)
Q Consensus 789 G~i~~~~~~~~ 799 (811)
|+|++...+..
T Consensus 244 G~v~~~~l~~~ 254 (300)
T PTZ00319 244 GYVDEEMLRAH 254 (300)
T ss_pred ceeCHHHHHhh
Confidence 99998766544
No 51
>cd06208 CYPOR_like_FNR These ferredoxin reductases are related to the NADPH cytochrome p450 reductases (CYPOR), but lack the FAD-binding region connecting sub-domain. Ferredoxin-NADP+ reductase (FNR) is an FAD-containing enzyme that catalyzes the reversible electron transfer between NADP(H) and electron carrier proteins, such as ferredoxin and flavodoxin. Isoforms of these flavoproteins (i.e. having a non-covalently bound FAD as a prosthetic group) are present in chloroplasts, mitochondria, and bacteria in which they participate in a wide variety of redox metabolic pathways. The C-terminal domain contains most of the NADP(H) binding residues and the N-terminal domain interacts non-covalently with the isoalloxazine rings of the flavin molecule which lies largely in a large gap between the two domains. Ferredoxin-NADP+ reductase first accepts one electron from reduced ferredoxin to form a flavin semiquinone intermediate. The enzyme then accepts a second electron to form FADH2, which then
Probab=99.77 E-value=9.3e-18 Score=181.44 Aligned_cols=171 Identities=18% Similarity=0.219 Sum_probs=125.4
Q ss_pred cceEEEEEEEec-----CCEEEEEEEcCCCcccCCCcEEEEEeccCC-----CCeeecCcccCCCCC-----CeEEEEEE
Q 003558 601 KAVSIQKVAVYP-----GNVLALHMSKPDRFRYKSGQYMFVNCAAVS-----PFEWHPFSITSAPDD-----DYLSVHIR 665 (811)
Q Consensus 601 ~~~~i~~v~~~~-----~~v~~l~l~~p~~~~~~pGQyv~l~~p~~s-----~~e~HPFSIas~p~~-----~~l~~~Ik 665 (811)
..++|++++.++ ++++++++..+..++|+|||||.|.+|... +...|||||+|.|.+ +.++|+||
T Consensus 9 ~~~~v~~~~~~~~~~~~~~~~~~~l~~~~~~~~~pGQ~v~l~~~~~~~~~g~~~~~R~YSIas~p~~~~~~~~~l~l~Vk 88 (286)
T cd06208 9 LIGKVVSNTRLTGPDAPGEVCHIVIDHGGKLPYLEGQSIGIIPPGTDAKNGKPHKLRLYSIASSRYGDDGDGKTLSLCVK 88 (286)
T ss_pred eEEEEEeceeccCCCCCcceEEEEEeCCCcccccCCceEEEECCCcchhcCCCCCceeeEecCCccccCCCCCEEEEEEE
Confidence 457889999987 689999999877889999999999876422 234799999998843 58999999
Q ss_pred Ec------------CCccHhHHHHhhhccCCCCCCCcccccccCCCCCCCCEEEEEcccCCCCCCC-CCCCeEEEEEeCc
Q 003558 666 TL------------GDWTRQLRTVFSEVCRPPPNGISGLLRAEGHNNPDFPRVLIDGPYGAPAQDY-KEYEVVLLVGLGI 732 (811)
Q Consensus 666 ~~------------g~~T~~L~~~~~~~~~~~~~G~sg~~~~~~~~~~~~~~v~idGPyG~~~~~~-~~~~~vllIagGi 732 (811)
.. |..|..|.+ + ++| ++|.|.||+|.+.... ...+++||||||+
T Consensus 89 ~~~~~~~~~~~~~~G~~S~~L~~-l-------~~G---------------d~v~v~gP~G~~~~~~~~~~~~~vlIagGt 145 (286)
T cd06208 89 RLVYTDPETDETKKGVCSNYLCD-L-------KPG---------------DDVQITGPVGKTMLLPEDPNATLIMIATGT 145 (286)
T ss_pred EEEEecCCCCceeccchHHHHhh-C-------CCC---------------CEEEEEeecCCcccCCCCCCCCEEEEecCc
Confidence 87 556666654 2 233 8999999999876432 2346899999999
Q ss_pred CHHHHHHHHHHHHHhc----------------ccchhhH-HHHHHHhhhcCC-Ce-EEEEEcCCCCCCCcccCccccCCH
Q 003558 733 GATPMISIVKDIVNNM----------------KAIEEEE-ENDLENGRDTGV-NT-TIIIIDNNYEPFFFWTQKKGPIQD 793 (811)
Q Consensus 733 GITP~lsil~~l~~~~----------------~~~~~~~-~~el~~~~~~~~-~~-~i~v~~~~~~~~~~w~g~~G~i~~ 793 (811)
||||++|++++++... ++.++++ .+++.++..++. +. .+++++++++. |.|.+|+|++
T Consensus 146 GIaP~~s~l~~~~~~~~~~~~~~~~v~L~~g~r~~~d~~~~~el~~l~~~~~~~~~~~~~~sr~~~~---~~g~~g~v~~ 222 (286)
T cd06208 146 GIAPFRSFLRRLFREKHADYKFTGLAWLFFGVPNSDSLLYDDELEKYPKQYPDNFRIDYAFSREQKN---ADGGKMYVQD 222 (286)
T ss_pred cHHHHHHHHHHHHHhhhcccCCCCCEEEEEEecCccchhHHHHHHHHHHhCCCcEEEEEEEcCCCCC---CCCCceehhh
Confidence 9999999999988651 1122233 455555555544 33 33455666666 8899999988
Q ss_pred HHHH
Q 003558 794 KKSI 797 (811)
Q Consensus 794 ~~~~ 797 (811)
.+.+
T Consensus 223 ~i~~ 226 (286)
T cd06208 223 RIAE 226 (286)
T ss_pred HHHH
Confidence 6654
No 52
>cd06220 DHOD_e_trans_like2 FAD/NAD binding domain in the electron transfer subunit of dihydroorotate dehydrogenase-like proteins. Dihydroorotate dehydrogenases (DHODs) catalyze the only redox reaction in pyrimidine de novo biosynthesis. They catalyze the oxidation of (S)-dihydroorotate to orotate coupled with the reduction of NAD+. In L. lactis, DHOD B (encoded by pyrDa) is co-expressed with pyrK and both gene products are required for full activity, as well as 3 cofactors: FMN, FAD, and an [2Fe-2S] cluster.
Probab=99.77 E-value=7.3e-18 Score=176.85 Aligned_cols=154 Identities=25% Similarity=0.358 Sum_probs=116.0
Q ss_pred eEEEEEEEecCCEEEEEEEcCCCcccCCCcEEEEEeccCCCCeeecCcccCCCCCCeEEEEEEEcCCccHhHHHHhhhcc
Q 003558 603 VSIQKVAVYPGNVLALHMSKPDRFRYKSGQYMFVNCAAVSPFEWHPFSITSAPDDDYLSVHIRTLGDWTRQLRTVFSEVC 682 (811)
Q Consensus 603 ~~i~~v~~~~~~v~~l~l~~p~~~~~~pGQyv~l~~p~~s~~e~HPFSIas~p~~~~l~~~Ik~~g~~T~~L~~~~~~~~ 682 (811)
++|.+++.+++++.+++++.| ++|+||||+.|.+|.. ..|||||+|.| +.++|+||..|.+|+.|.+ +
T Consensus 1 ~~v~~~~~~t~~~~~~~l~~~--~~~~pGQ~v~l~~~~~---~~~~~Si~s~~--~~l~~~v~~~G~~s~~L~~-l---- 68 (233)
T cd06220 1 VTIKEVIDETPTVKTFVFDWD--FDFKPGQFVMVWVPGV---DEIPMSLSYID--GPNSITVKKVGEATSALHD-L---- 68 (233)
T ss_pred CEEEEEEEEcCCEEEEEEecC--CCCCCCceEEEEeCCC---CcceeEEecCC--CeEEEEEEecChHHHHHHh-c----
Confidence 468899999999999999875 5899999999999864 46999999998 8899999999999998875 3
Q ss_pred CCCCCCCcccccccCCCCCCCCEEEEEcccCCCCCCCCCCCeEEEEEeCcCHHHHHHHHHHHHHh--------cccchhh
Q 003558 683 RPPPNGISGLLRAEGHNNPDFPRVLIDGPYGAPAQDYKEYEVVLLVGLGIGATPMISIVKDIVNN--------MKAIEEE 754 (811)
Q Consensus 683 ~~~~~G~sg~~~~~~~~~~~~~~v~idGPyG~~~~~~~~~~~vllIagGiGITP~lsil~~l~~~--------~~~~~~~ 754 (811)
++| +++.|.||||.+.. .. .+++|+||||+||||++|++++++.. .++.++.
T Consensus 69 ---~~G---------------d~v~i~gP~G~~f~-~~-~~~~vliAgGtGitP~~sil~~~~~~~~i~l~~~~r~~~d~ 128 (233)
T cd06220 69 ---KEG---------------DKLGIRGPYGNGFE-LV-GGKVLLIGGGIGIAPLAPLAERLKKAADVTVLLGARTKEEL 128 (233)
T ss_pred ---CCC---------------CEEEEECcCCCCcc-CC-CCeEEEEecCcChHHHHHHHHHHHhcCCEEEEEecCChHHC
Confidence 233 88999999998432 22 68999999999999999999999865 1222233
Q ss_pred HH-HHHHHhhhcCCCeEEEEEcCCCCCCCcccCccccCCHHHHHHh
Q 003558 755 EE-NDLENGRDTGVNTTIIIIDNNYEPFFFWTQKKGPIQDKKSILL 799 (811)
Q Consensus 755 ~~-~el~~~~~~~~~~~i~v~~~~~~~~~~w~g~~G~i~~~~~~~~ 799 (811)
++ +++.+ ..+ ++++.+ +. |.+.+|++++.+.+..
T Consensus 129 ~~~~eL~~----~~~--~~~~~~--~~---~~~~~g~~~~~l~~~~ 163 (233)
T cd06220 129 LFLDRLRK----SDE--LIVTTD--DG---SYGFKGFVTDLLKELD 163 (233)
T ss_pred hhHHHHhh----CCc--EEEEEe--CC---CCcccceehHHHhhhc
Confidence 33 33333 122 222222 23 7788899987654443
No 53
>PRK05802 hypothetical protein; Provisional
Probab=99.76 E-value=1.2e-17 Score=182.73 Aligned_cols=125 Identities=23% Similarity=0.380 Sum_probs=103.1
Q ss_pred cceEEEEEEEecCCEEEEEEEcCCC---cccCCCcEEEEEeccCCCCeeecCcccCCC-CCCeEEEEEEEcCCccHhHHH
Q 003558 601 KAVSIQKVAVYPGNVLALHMSKPDR---FRYKSGQYMFVNCAAVSPFEWHPFSITSAP-DDDYLSVHIRTLGDWTRQLRT 676 (811)
Q Consensus 601 ~~~~i~~v~~~~~~v~~l~l~~p~~---~~~~pGQyv~l~~p~~s~~e~HPFSIas~p-~~~~l~~~Ik~~g~~T~~L~~ 676 (811)
+.++|++++.+++++..+++..|.. ..++|||||+|+++..+.+..|||||+++| +++.++|+||..|..|+.|.+
T Consensus 65 ~~~~I~~~~~~t~dv~~l~l~~p~~~~~~~~~PGQFv~l~~~~~~~~~~rP~SI~~~~~~~g~l~l~ik~~G~~T~~L~~ 144 (320)
T PRK05802 65 YECKIIKKENIEDNLIILTLKVPHKLARDLVYPGSFVFLRNKNSSSFFDVPISIMEADTEENIIKVAIEIRGVKTKKIAK 144 (320)
T ss_pred EeEEEEEEEEecCCEEEEEEECCchhhhccCCCCceEEEEEcCCCCEeEEeeEecccCCCCCEEEEEEEecChhHHHHhc
Confidence 4688999999999999999998764 347999999999987666778999999987 468899999999999988863
Q ss_pred HhhhccCCCCCCCcccccccCCCCCCCCEEEEEcccCCC--CCC---CCCCCeEEEEEeCcCHHHHHHHHHHHHHhc
Q 003558 677 VFSEVCRPPPNGISGLLRAEGHNNPDFPRVLIDGPYGAP--AQD---YKEYEVVLLVGLGIGATPMISIVKDIVNNM 748 (811)
Q Consensus 677 ~~~~~~~~~~~G~sg~~~~~~~~~~~~~~v~idGPyG~~--~~~---~~~~~~vllIagGiGITP~lsil~~l~~~~ 748 (811)
+ ++| +++.|.||||+. ... ....+++|+|||||||||+++++++++++.
T Consensus 145 -l-------~~G---------------d~l~v~GP~GnG~F~l~~~~~~~~~~~llIaGGiGIaPl~~l~~~l~~~~ 198 (320)
T PRK05802 145 -L-------NKG---------------DEILLRGPYWNGILGLKNIKSTKNGKSLVIARGIGQAPGVPVIKKLYSNG 198 (320)
T ss_pred -C-------CCC---------------CEEEEeCCCCcCcCCcccccccCCCeEEEEEeEEeHHHHHHHHHHHHHcC
Confidence 2 233 889999999753 221 123568999999999999999999998753
No 54
>PRK05464 Na(+)-translocating NADH-quinone reductase subunit F; Provisional
Probab=99.76 E-value=1.2e-17 Score=189.46 Aligned_cols=171 Identities=17% Similarity=0.293 Sum_probs=127.5
Q ss_pred cceEEEEEEEecCCEEEEEEEcC--CCcccCCCcEEEEEeccC-----------------------------CCCeeecC
Q 003558 601 KAVSIQKVAVYPGNVLALHMSKP--DRFRYKSGQYMFVNCAAV-----------------------------SPFEWHPF 649 (811)
Q Consensus 601 ~~~~i~~v~~~~~~v~~l~l~~p--~~~~~~pGQyv~l~~p~~-----------------------------s~~e~HPF 649 (811)
+.++|++++.+++++.++++..| .++.|+||||+.|++|.. +....|||
T Consensus 134 ~~~~V~~~~~ls~~i~~l~l~~~~~~~~~~~pGQ~v~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~R~y 213 (409)
T PRK05464 134 WECTVISNDNVATFIKELVLKIPEGEEVPFRAGGYIQIEAPPHKVKYKDFDIPEEYRGDWDKFNLFRLVSKVDEPVIRAY 213 (409)
T ss_pred EEEEEEEcccCCchhheEEEecCCCCcccccCCceEEEEcccccccccccccchhhhhhhhhccccceeccCCCceeeee
Confidence 36789999999999999999887 357899999999999742 12467999
Q ss_pred cccCCCCC-CeEEEEEEEc-----------CCccHhHHHHhhhccCCCCCCCcccccccCCCCCCCCEEEEEcccCCCCC
Q 003558 650 SITSAPDD-DYLSVHIRTL-----------GDWTRQLRTVFSEVCRPPPNGISGLLRAEGHNNPDFPRVLIDGPYGAPAQ 717 (811)
Q Consensus 650 SIas~p~~-~~l~~~Ik~~-----------g~~T~~L~~~~~~~~~~~~~G~sg~~~~~~~~~~~~~~v~idGPyG~~~~ 717 (811)
||+|.|.+ +.++|+||.. |..|..|.+ + ++| +.+.|.||+|.+..
T Consensus 214 Sias~p~~~~~l~~~vr~~~~~~~~~~~~~G~~S~~L~~-l-------~~G---------------d~v~v~gP~G~f~~ 270 (409)
T PRK05464 214 SMANYPEEKGIIMLNVRIATPPPGNPDVPPGIMSSYIFS-L-------KPG---------------DKVTISGPFGEFFA 270 (409)
T ss_pred ccCCCCCCCCeEEEEEEEeecCCCcCCCCCCchhhHHHh-C-------CCC---------------CEEEEEccccCcEe
Confidence 99999964 6899999973 667777764 2 344 88999999999875
Q ss_pred CCCCCCeEEEEEeCcCHHHHHHHHHHHHHhcc------------cchhhH-HHHHHHhhhcCCCeEEE-EEcCC--CCCC
Q 003558 718 DYKEYEVVLLVGLGIGATPMISIVKDIVNNMK------------AIEEEE-ENDLENGRDTGVNTTII-IIDNN--YEPF 781 (811)
Q Consensus 718 ~~~~~~~vllIagGiGITP~lsil~~l~~~~~------------~~~~~~-~~el~~~~~~~~~~~i~-v~~~~--~~~~ 781 (811)
. ...+++||||||+||||++||+++++.... +.++.+ .+++.++..+..+..++ +++++ .+.
T Consensus 271 ~-~~~~~ivlIAgGtGIaP~~sml~~~l~~~~~~~~v~L~~g~r~~~d~~~~~el~~l~~~~~~~~~~~~~s~~~~~~~- 348 (409)
T PRK05464 271 K-DTDAEMVFIGGGAGMAPMRSHIFDQLKRLKSKRKISFWYGARSLREMFYVEDFDQLAAENPNFKWHVALSDPLPEDN- 348 (409)
T ss_pred c-CCCceEEEEEeccChhHHHHHHHHHHhCCCCCceEEEEEecCCHHHhhHHHHHHHHHHhCCCeEEEEEEcCCCCCCC-
Confidence 4 456899999999999999999998876422 122233 45555555555564333 44432 234
Q ss_pred CcccCccccCCHHHHHH
Q 003558 782 FFWTQKKGPIQDKKSIL 798 (811)
Q Consensus 782 ~~w~g~~G~i~~~~~~~ 798 (811)
|.|.+|++++.+.+.
T Consensus 349 --~~g~~G~v~~~l~~~ 363 (409)
T PRK05464 349 --WTGYTGFIHNVLYEN 363 (409)
T ss_pred --CCCccceeCHHHHHh
Confidence 889999999877654
No 55
>KOG0034 consensus Ca2+/calmodulin-dependent protein phosphatase (calcineurin subunit B), EF-Hand superfamily protein [Signal transduction mechanisms]
Probab=99.75 E-value=8.3e-18 Score=168.14 Aligned_cols=150 Identities=18% Similarity=0.281 Sum_probs=129.1
Q ss_pred CcccHHHHHHHHHhHccC-CCCceehhhhcccccCCCCCHHHHHHHHHHHHccCCCCCCc-eeHHHHHHHHHHhccCCh-
Q 003558 165 GGAGWANVEKRFDEITAS-TNGVLPRARFGECIGMNKDSKDFAVELFDALTRRRNIQGDT-ITKDQLREFWDQISDQSF- 241 (811)
Q Consensus 165 ~~~~~~~l~~~F~~lD~d-~dG~Is~~ef~~~lg~~~~~~~~~~~lf~~l~d~d~~~~G~-I~~~EF~~~~~~l~~~~~- 241 (811)
+..|++.+..+|.++|.+ ++|.++.+||..+.... .+.+.+++++. ++.++ +|. |+|+||+..+..+.....
T Consensus 28 s~~EI~~L~~rF~kl~~~~~~g~lt~eef~~i~~~~--~Np~~~rI~~~-f~~~~--~~~~v~F~~Fv~~ls~f~~~~~~ 102 (187)
T KOG0034|consen 28 SANEIERLYERFKKLDRNNGDGYLTKEEFLSIPELA--LNPLADRIIDR-FDTDG--NGDPVDFEEFVRLLSVFSPKASK 102 (187)
T ss_pred CHHHHHHHHHHHHHhccccccCccCHHHHHHHHHHh--cCcHHHHHHHH-HhccC--CCCccCHHHHHHHHhhhcCCccH
Confidence 356899999999999999 99999999999998554 35678999995 66666 555 999999999999876655
Q ss_pred HHHHHHHhhhhcCCCCCceeHHHHHHHHHhhhccCCCcchHHHHHHHHHHHHHHcCCCCCCcccHHHHHHHHHhCCccc
Q 003558 242 DSRLQTFFDMVDKDADGRITEDEVREIISLSASANKLSNIQKQAEEYAALIMEELDPDHLGCIMIDNLEMLLLQAPAQS 320 (811)
Q Consensus 242 ~e~l~~~F~~fDkD~dG~It~eE~~~il~~~~~~~~l~~~~~~~~e~~~~i~~e~D~d~dG~Is~eEF~~~l~~~p~~~ 320 (811)
+++++.+|++||.|+||+|+.+|+.+++......+... .+++.+++++.+|.++|.|+||+|+++||++.+.+.|...
T Consensus 103 ~~Kl~faF~vYD~~~~G~I~reel~~iv~~~~~~~~~~-~~e~~~~i~d~t~~e~D~d~DG~IsfeEf~~~v~~~P~~~ 180 (187)
T KOG0034|consen 103 REKLRFAFRVYDLDGDGFISREELKQILRMMVGENDDM-SDEQLEDIVDKTFEEADTDGDGKISFEEFCKVVEKQPDLL 180 (187)
T ss_pred HHHHHHHHHHhcCCCCCcCcHHHHHHHHHHHHccCCcc-hHHHHHHHHHHHHHHhCCCCCCcCcHHHHHHHHHcCccHH
Confidence 45999999999999999999999999998655544333 5788899999999999999999999999999999999764
No 56
>PLN03115 ferredoxin--NADP(+) reductase; Provisional
Probab=99.74 E-value=4.1e-17 Score=180.58 Aligned_cols=170 Identities=17% Similarity=0.211 Sum_probs=121.3
Q ss_pred ceEEEEEEEec-----CCEEEEEEEcCCCcccCCCcEEEEEeccC----CCCeeecCcccCCCC-----CCeEEEEEEEc
Q 003558 602 AVSIQKVAVYP-----GNVLALHMSKPDRFRYKSGQYMFVNCAAV----SPFEWHPFSITSAPD-----DDYLSVHIRTL 667 (811)
Q Consensus 602 ~~~i~~v~~~~-----~~v~~l~l~~p~~~~~~pGQyv~l~~p~~----s~~e~HPFSIas~p~-----~~~l~~~Ik~~ 667 (811)
..+|.....+. +++.+|+|..+..++|+||||+.|.+|.. .+...|||||+|+|. +++++|+||+.
T Consensus 92 ~~~v~~n~~i~~~~~~~~v~~l~l~~~~~~~f~~GQfv~I~~~g~~~~g~p~~~R~YSIAS~p~~~~~~~~~l~L~Vk~~ 171 (367)
T PLN03115 92 TGRCLLNTKITGDDAPGETWHMVFSTEGEIPYREGQSIGVIPDGIDKNGKPHKLRLYSIASSALGDFGDSKTVSLCVKRL 171 (367)
T ss_pred EEEEEeecccccCCCCCceEEEEEcCCCCCCcCCCCEEEEEcCCcCCCCCcCceeeeecCCCCcccCCCCCEEEEEEEEE
Confidence 34555555543 48999999887789999999999998743 234579999999983 46899999975
Q ss_pred -----------CCccHhHHHHhhhccCCCCCCCcccccccCCCCCCCCEEEEEcccCCCCCCC-CCCCeEEEEEeCcCHH
Q 003558 668 -----------GDWTRQLRTVFSEVCRPPPNGISGLLRAEGHNNPDFPRVLIDGPYGAPAQDY-KEYEVVLLVGLGIGAT 735 (811)
Q Consensus 668 -----------g~~T~~L~~~~~~~~~~~~~G~sg~~~~~~~~~~~~~~v~idGPyG~~~~~~-~~~~~vllIagGiGIT 735 (811)
|..|..|.+ + ++| +.|.|.||+|.+.... ....++||||||+|||
T Consensus 172 ~y~~~~g~~~~G~~S~~L~~-L-------k~G---------------d~V~v~GP~G~~fllp~~~~~~iImIAgGTGIA 228 (367)
T PLN03115 172 VYTNDQGEIVKGVCSNFLCD-L-------KPG---------------AEVKITGPVGKEMLMPKDPNATIIMLATGTGIA 228 (367)
T ss_pred EeecCCCccCCeehHhhHhh-C-------CCc---------------CEEEEEeecCCceeCCcCCCCCEEEEeCCeeHH
Confidence 445666654 2 344 8999999999875322 3446899999999999
Q ss_pred HHHHHHHHHHHhcc----------------cchhhH-HHHHHHhhhcCC-Ce-EEEEEcCCCCCCCcccCccccCCHHHH
Q 003558 736 PMISIVKDIVNNMK----------------AIEEEE-ENDLENGRDTGV-NT-TIIIIDNNYEPFFFWTQKKGPIQDKKS 796 (811)
Q Consensus 736 P~lsil~~l~~~~~----------------~~~~~~-~~el~~~~~~~~-~~-~i~v~~~~~~~~~~w~g~~G~i~~~~~ 796 (811)
|++|+|++++.... +.++++ .+|+.+...... +. .+++.+++++. |.|.+|+|++.+.
T Consensus 229 P~rs~L~~~~~~~~~~~~~~~~v~Lf~G~R~~~dlly~dELe~l~~~~p~~f~v~~a~SR~~~~---~~G~kgyVqd~i~ 305 (367)
T PLN03115 229 PFRSFLWKMFFEKHDDYKFNGLAWLFLGVPTSSSLLYKEEFEKMKEKAPENFRLDFAVSREQTN---AKGEKMYIQTRMA 305 (367)
T ss_pred HHHHHHHHHHhhccccccCCCcEEEEEccCCHHHhhHHHHHHHHHHhCCCCEEEEEEEcCCCcc---cCCcceeehhHHH
Confidence 99999998754321 122333 455555555544 43 45566776666 9999999988765
Q ss_pred H
Q 003558 797 I 797 (811)
Q Consensus 797 ~ 797 (811)
+
T Consensus 306 e 306 (367)
T PLN03115 306 E 306 (367)
T ss_pred H
Confidence 4
No 57
>COG0543 UbiB 2-polyprenylphenol hydroxylase and related flavodoxin oxidoreductases [Coenzyme metabolism / Energy production and conversion]
Probab=99.74 E-value=5.3e-17 Score=172.10 Aligned_cols=164 Identities=23% Similarity=0.372 Sum_probs=123.1
Q ss_pred ceEEEEEEEecCCEEEEEEEcCCC-cccCCCcEEEEEeccCCCCeeecCcccCCCC-CCeEEEEEE--EcCCccHhHHHH
Q 003558 602 AVSIQKVAVYPGNVLALHMSKPDR-FRYKSGQYMFVNCAAVSPFEWHPFSITSAPD-DDYLSVHIR--TLGDWTRQLRTV 677 (811)
Q Consensus 602 ~~~i~~v~~~~~~v~~l~l~~p~~-~~~~pGQyv~l~~p~~s~~e~HPFSIas~p~-~~~l~~~Ik--~~g~~T~~L~~~ 677 (811)
.++|.+++.+++++..+++..|.. +.++||||+.|+.|. ...+|||++|.|. ++.+.|+|+ ..|..|+.+.+.
T Consensus 9 ~~~I~~~~~is~~~~~l~~~~~~~~~~~~pGQfv~l~~~~---~~~~P~si~~~~~~~g~~~l~i~~~~~G~~T~~i~~~ 85 (252)
T COG0543 9 SYKVVEKEEISPDTFLLRLRLPFVALTFKPGQFVMLRVPG---GVRRPYSLASAPDDKGELELHIRVYEVGKVTKYIFGL 85 (252)
T ss_pred ccEEEEEEEecCceEEEEEeccccccccCCCcEEEEEeCC---CcEEEeeeccCCCcCCcEEEEEEEEeCChHHHHHhhc
Confidence 378999999999999999988765 689999999999998 3899999999986 455555555 578899888765
Q ss_pred hhhccCCCCCCCcccccccCCCCCCCCEEEEEcccCCCCCCCCCCCeEEEEEeCcCHHHHHHHHHHHHHhc---------
Q 003558 678 FSEVCRPPPNGISGLLRAEGHNNPDFPRVLIDGPYGAPAQDYKEYEVVLLVGLGIGATPMISIVKDIVNNM--------- 748 (811)
Q Consensus 678 ~~~~~~~~~~G~sg~~~~~~~~~~~~~~v~idGPyG~~~~~~~~~~~vllIagGiGITP~lsil~~l~~~~--------- 748 (811)
++ ++.+.|.||||++.......+++++||||+|++|++++++++.++.
T Consensus 86 --------k~---------------gd~i~v~GP~G~~~~~~~~~~~vlliagGtG~aPl~~i~~~~~~~~~~~~V~~~~ 142 (252)
T COG0543 86 --------KE---------------GDKIRVRGPLGNGFLREKIGKPVLLIAGGTGIAPLYAIAKELKEKGDANKVTLLY 142 (252)
T ss_pred --------cC---------------CCEEEEEcCCCCCccccccCCcEEEEecccCHhHHHHHHHHHHhcCCCceEEEEE
Confidence 12 3779999999998864444555999999999999999999999843
Q ss_pred --ccchhhHH-HHHHHhhhcCCCeEEEEEcCCCCCCCcccCccccCCHHHHHHhh
Q 003558 749 --KAIEEEEE-NDLENGRDTGVNTTIIIIDNNYEPFFFWTQKKGPIQDKKSILLL 800 (811)
Q Consensus 749 --~~~~~~~~-~el~~~~~~~~~~~i~v~~~~~~~~~~w~g~~G~i~~~~~~~~~ 800 (811)
++.++++. +++.+...+ ..+++++ ++ |.|.+|+++.+....+.
T Consensus 143 G~~~~~dl~~~~el~~~~~~---~~~~~~~---~~---~~G~~G~v~~~~~~~~~ 188 (252)
T COG0543 143 GARTAKDLLLLDELEELAEK---EVHPVTD---DG---WKGRKGFVTTDVLKELL 188 (252)
T ss_pred eccChhhcccHHHHHHhhcC---cEEEEEC---CC---CCccCcceeHHHHhhhc
Confidence 22333344 444443333 3344444 45 89999999666555444
No 58
>TIGR01941 nqrF NADH:ubiquinone oxidoreductase, Na(+)-translocating, F subunit. This model represents the NqrF subunit of the six-protein, Na(+)-pumping NADH-quinone reductase of a number of marine and pathogenic Gram-negative bacteria. This oxidoreductase complex functions primarily as a sodium ion pump.
Probab=99.74 E-value=2.7e-17 Score=186.21 Aligned_cols=171 Identities=18% Similarity=0.306 Sum_probs=125.5
Q ss_pred cceEEEEEEEecCCEEEEEEEcCC--CcccCCCcEEEEEeccC-----------------------------CCCeeecC
Q 003558 601 KAVSIQKVAVYPGNVLALHMSKPD--RFRYKSGQYMFVNCAAV-----------------------------SPFEWHPF 649 (811)
Q Consensus 601 ~~~~i~~v~~~~~~v~~l~l~~p~--~~~~~pGQyv~l~~p~~-----------------------------s~~e~HPF 649 (811)
..++|++++.+++++.++++..+. ++.|+||||+.|.+|.. +...+|||
T Consensus 130 ~~~~v~~~~~~s~~i~~l~l~~~~~~~~~~~pGQfv~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~R~y 209 (405)
T TIGR01941 130 WECEVISNDNVATFIKELVLKLPDGESVPFKAGGYIQIEAPPHVVKYADFDIPPEYRGDWEKFNLFDLVSKVDEETVRAY 209 (405)
T ss_pred eeeEEEEcccccchhheEEEecCCCceeeecCCceEEEEcccccccccccccchhhhhhHhhhcchheeccCCCccceee
Confidence 357888999999999999998764 47899999999999743 12357999
Q ss_pred cccCCCC-CCeEEEEEEEc-----------CCccHhHHHHhhhccCCCCCCCcccccccCCCCCCCCEEEEEcccCCCCC
Q 003558 650 SITSAPD-DDYLSVHIRTL-----------GDWTRQLRTVFSEVCRPPPNGISGLLRAEGHNNPDFPRVLIDGPYGAPAQ 717 (811)
Q Consensus 650 SIas~p~-~~~l~~~Ik~~-----------g~~T~~L~~~~~~~~~~~~~G~sg~~~~~~~~~~~~~~v~idGPyG~~~~ 717 (811)
||+|.|. ++.++|+||.. |..|..|.+ + ++| +.+.|.||+|.+..
T Consensus 210 Sias~p~~~~~l~~~vr~~~~~~~~~~~~~G~~S~~L~~-l-------~~G---------------d~v~i~gP~G~f~l 266 (405)
T TIGR01941 210 SMANYPAEKGIIKLNVRIATPPFINSDIPPGIMSSYIFS-L-------KPG---------------DKVTISGPFGEFFA 266 (405)
T ss_pred cCCCCCCCCCeEEEEEEEeccCcccCCCCCCcHHHHHhc-C-------CCc---------------CEEEEEeccCCCee
Confidence 9999996 46899999974 667777653 2 344 89999999999875
Q ss_pred CCCCCCeEEEEEeCcCHHHHHHHHHHHHHhc------------ccchhhH-HHHHHHhhhcCCCeEE-EEEcCC--CCCC
Q 003558 718 DYKEYEVVLLVGLGIGATPMISIVKDIVNNM------------KAIEEEE-ENDLENGRDTGVNTTI-IIIDNN--YEPF 781 (811)
Q Consensus 718 ~~~~~~~vllIagGiGITP~lsil~~l~~~~------------~~~~~~~-~~el~~~~~~~~~~~i-~v~~~~--~~~~ 781 (811)
. ...+++||||||+||||++||+++++... ++.++++ .+++.++..++.+..+ ++++++ .+.
T Consensus 267 ~-~~~~~lvlIAgGtGIaP~lsmi~~~l~~~~~~~~v~l~~g~R~~~dl~~~~el~~l~~~~~~~~~~~~~s~~~~~~~- 344 (405)
T TIGR01941 267 K-DTDAEMVFIGGGAGMAPMRSHIFDQLKRLKSKRKISFWYGARSLREMFYQEDFDQLEAENPNFVWHVALSDPQPEDN- 344 (405)
T ss_pred c-CCCCCEEEEecCcCcchHHHHHHHHHhcCCCCCeEEEEEecCCHHHHhHHHHHHHHHHhCCCeEEEEEeCCCCccCC-
Confidence 3 34578999999999999999999877532 1222333 3455555455556433 344432 344
Q ss_pred CcccCccccCCHHHHHH
Q 003558 782 FFWTQKKGPIQDKKSIL 798 (811)
Q Consensus 782 ~~w~g~~G~i~~~~~~~ 798 (811)
|.|.+|++++...+.
T Consensus 345 --~~g~~G~v~~~l~~~ 359 (405)
T TIGR01941 345 --WTGYTGFIHNVLYEN 359 (405)
T ss_pred --CCCccceeCHHHHHh
Confidence 899999999876543
No 59
>KOG0027 consensus Calmodulin and related proteins (EF-Hand superfamily) [Signal transduction mechanisms]
Probab=99.72 E-value=5e-17 Score=159.06 Aligned_cols=139 Identities=17% Similarity=0.336 Sum_probs=117.5
Q ss_pred cccHHHHHHHHHhHccCCCCceehhhhcccc---cCCCCCHHHHHHHHHHHHccCCCCCCceeHHHHHHHHHHhccCC--
Q 003558 166 GAGWANVEKRFDEITASTNGVLPRARFGECI---GMNKDSKDFAVELFDALTRRRNIQGDTITKDQLREFWDQISDQS-- 240 (811)
Q Consensus 166 ~~~~~~l~~~F~~lD~d~dG~Is~~ef~~~l---g~~~~~~~~~~~lf~~l~d~d~~~~G~I~~~EF~~~~~~l~~~~-- 240 (811)
.++..++++.|+.+|+|++|.|+..|+..++ |..+ +++.+..+++. .|.++ +|.|+++||..++.......
T Consensus 4 ~~~~~el~~~F~~fD~d~~G~i~~~el~~~lr~lg~~~-t~~el~~~~~~-~D~dg--~g~I~~~eF~~l~~~~~~~~~~ 79 (151)
T KOG0027|consen 4 EEQILELKEAFQLFDKDGDGKISVEELGAVLRSLGQNP-TEEELRDLIKE-IDLDG--DGTIDFEEFLDLMEKLGEEKTD 79 (151)
T ss_pred HHHHHHHHHHHHHHCCCCCCcccHHHHHHHHHHcCCCC-CHHHHHHHHHH-hCCCC--CCeEcHHHHHHHHHhhhccccc
Confidence 3567889999999999999999999999987 6677 78888889885 66776 99999999999998765432
Q ss_pred ---hHHHHHHHhhhhcCCCCCceeHHHHHHHHHhhhccCCCcchHHHHHHHHHHHHHHcCCCCCCcccHHHHHHHHHhC
Q 003558 241 ---FDSRLQTFFDMVDKDADGRITEDEVREIISLSASANKLSNIQKQAEEYAALIMEELDPDHLGCIMIDNLEMLLLQA 316 (811)
Q Consensus 241 ---~~e~l~~~F~~fDkD~dG~It~eE~~~il~~~~~~~~l~~~~~~~~e~~~~i~~e~D~d~dG~Is~eEF~~~l~~~ 316 (811)
..++++.+|+.||+|+||+||.+||+++|...... .+ .+.++.+++++|.|+||.|+|+||.+||...
T Consensus 80 ~~~~~~el~eaF~~fD~d~~G~Is~~el~~~l~~lg~~--~~------~~e~~~mi~~~d~d~dg~i~f~ef~~~m~~~ 150 (151)
T KOG0027|consen 80 EEASSEELKEAFRVFDKDGDGFISASELKKVLTSLGEK--LT------DEECKEMIREVDVDGDGKVNFEEFVKMMSGK 150 (151)
T ss_pred ccccHHHHHHHHHHHccCCCCcCcHHHHHHHHHHhCCc--CC------HHHHHHHHHhcCCCCCCeEeHHHHHHHHhcC
Confidence 34699999999999999999999999999744322 22 5567779999999999999999999999753
No 60
>PRK05713 hypothetical protein; Provisional
Probab=99.72 E-value=6.1e-17 Score=177.21 Aligned_cols=171 Identities=16% Similarity=0.272 Sum_probs=121.1
Q ss_pred cceEEEEEEEecCCEEEEEEEcCCCcccCCCcEEEEEeccCCCCeeecCcccCCCC-CCeEEEEEEEc--CCccHhHHHH
Q 003558 601 KAVSIQKVAVYPGNVLALHMSKPDRFRYKSGQYMFVNCAAVSPFEWHPFSITSAPD-DDYLSVHIRTL--GDWTRQLRTV 677 (811)
Q Consensus 601 ~~~~i~~v~~~~~~v~~l~l~~p~~~~~~pGQyv~l~~p~~s~~e~HPFSIas~p~-~~~l~~~Ik~~--g~~T~~L~~~ 677 (811)
.+++|++++.++++++.++++.+..+.|+||||+.|.++.. .+|||||+|.|. ++.++|+||.. |.+|..|.+
T Consensus 92 ~~~~V~~~~~~t~dv~~l~l~~~~~~~~~~GQfv~l~~~~~---~~R~ySias~p~~~~~l~~~I~~~~~G~~s~~l~~- 167 (312)
T PRK05713 92 LPARVVALDWLGGDVLRLRLEPERPLRYRAGQHLVLWTAGG---VARPYSLASLPGEDPFLEFHIDCSRPGAFCDAARQ- 167 (312)
T ss_pred CCeEEEEEecCCCCEEEEEEccCCcCCcCCCCEEEEecCCC---cccccccCcCCCCCCeEEEEEEEcCCCccchhhhc-
Confidence 46899999999999999999977788999999999998642 589999999985 57899999854 567776632
Q ss_pred hhhccCCCCCCCcccccccCCCCCCCCEEEEEcccCCC-CCCCC-CCCeEEEEEeCcCHHHHHHHHHHHHHhcc------
Q 003558 678 FSEVCRPPPNGISGLLRAEGHNNPDFPRVLIDGPYGAP-AQDYK-EYEVVLLVGLGIGATPMISIVKDIVNNMK------ 749 (811)
Q Consensus 678 ~~~~~~~~~~G~sg~~~~~~~~~~~~~~v~idGPyG~~-~~~~~-~~~~vllIagGiGITP~lsil~~l~~~~~------ 749 (811)
+ ++| ++|.|.||+|.+ ..+.. ..+++||||||+||||++||++++++...
T Consensus 168 l-------~~G---------------d~v~l~~p~gg~~~~~~~~~~~~~vlIAgGtGiaP~~s~l~~~~~~~~~~~v~l 225 (312)
T PRK05713 168 L-------QVG---------------DLLRLGELRGGALHYDPDWQERPLWLLAAGTGLAPLWGILREALRQGHQGPIRL 225 (312)
T ss_pred C-------CCC---------------CEEEEccCCCCceEecCCCCCCcEEEEecCcChhHHHHHHHHHHhcCCCCcEEE
Confidence 2 344 889999999853 22222 45789999999999999999999987532
Q ss_pred -----cchhhH-HHHHHHhhhcCCCeEE-EEEcC------------CCCCCCcccCccccCCHHHHH
Q 003558 750 -----AIEEEE-ENDLENGRDTGVNTTI-IIIDN------------NYEPFFFWTQKKGPIQDKKSI 797 (811)
Q Consensus 750 -----~~~~~~-~~el~~~~~~~~~~~i-~v~~~------------~~~~~~~w~g~~G~i~~~~~~ 797 (811)
+.++++ .+++.++..++.+..+ +++++ +....++-+|..+.++.....
T Consensus 226 ~~g~r~~~d~~~~~el~~l~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~vyiCGp~~mv~~~~~~ 292 (312)
T PRK05713 226 LHLARDSAGHYLAEPLAALAGRHPQLSVELVTAAQLPAALAELRLVSRQTMALLCGSPASVERFARR 292 (312)
T ss_pred EEEcCchHHhhhHHHHHHHHHHCCCcEEEEEECcchhhhhhhccCCCCCeEEEEeCCHHHHHHHHHH
Confidence 222333 4455555555555332 33321 111234567777777665444
No 61
>cd06200 SiR_like1 Cytochrome p450- like alpha subunits of E. coli sulfite reductase (SiR) multimerize with beta subunits to catalyze the NADPH dependent reduction of sulfite to sulfide. Beta subunits have an Fe4S4 cluster and a siroheme, while the alpha subunits (cysJ gene) are of the cytochrome p450 (CyPor) family having FAD and FMN as prosthetic groups and utilizing NADPH. Cypor (including cyt -450 reductase, nitric oxide synthase, and methionine synthase reductase) are ferredoxin reductase (FNR)-like proteins with an additional N-terminal FMN domain and a connecting sub-domain inserted within the flavin binding portion of the FNR-like domain. The connecting domain orients the N-terminal FMN domain with the C-terminal FNR domain. NADPH cytochrome p450 reductase (CYPOR) serves as an electron donor in several oxygenase systems and is a component of nitric oxide synthases and methionine synthase reductases. CYPOR transfers two electrons from NADPH to the heme of cytochrome p450 via FAD
Probab=99.71 E-value=2.7e-16 Score=166.30 Aligned_cols=109 Identities=17% Similarity=0.231 Sum_probs=88.6
Q ss_pred CEEEEEEEcC-CCcccCCCcEEEEEeccCCCCeeecCcccCCCCCCeEEEEEEEcCC-------ccHhHHHHhhhccCCC
Q 003558 614 NVLALHMSKP-DRFRYKSGQYMFVNCAAVSPFEWHPFSITSAPDDDYLSVHIRTLGD-------WTRQLRTVFSEVCRPP 685 (811)
Q Consensus 614 ~v~~l~l~~p-~~~~~~pGQyv~l~~p~~s~~e~HPFSIas~p~~~~l~~~Ik~~g~-------~T~~L~~~~~~~~~~~ 685 (811)
++.+|++..+ ..+.|+||||+.|.++. ...+|||||+|.|.++.++|+||..++ .|..|.+.+
T Consensus 17 ~v~~l~l~~~~~~~~f~pGQ~v~l~~~~--~~~~R~YSIas~p~~~~l~l~Vk~~~~~~~~~G~~S~~L~~~~------- 87 (245)
T cd06200 17 PLWRLRLTPPDAGAQWQAGDIAEIGPRH--PLPHREYSIASLPADGALELLVRQVRHADGGLGLGSGWLTRHA------- 87 (245)
T ss_pred ceEEEEEecCCCCCCccCCcEEEecCCC--CCCCcceEeccCCCCCEEEEEEEEeccCCCCCeeechhhhhCC-------
Confidence 5899999987 57899999999999764 357899999999988899999999754 677666543
Q ss_pred CCCCcccccccCCCCCCCCEEEEEcccC-CCCCCCCCCCeEEEEEeCcCHHHHHHHHHHHHHh
Q 003558 686 PNGISGLLRAEGHNNPDFPRVLIDGPYG-APAQDYKEYEVVLLVGLGIGATPMISIVKDIVNN 747 (811)
Q Consensus 686 ~~G~sg~~~~~~~~~~~~~~v~idGPyG-~~~~~~~~~~~vllIagGiGITP~lsil~~l~~~ 747 (811)
++ +++|.|.||.| .+..+ ...+++||||||+||||++|+++++..+
T Consensus 88 ~~---------------Gd~v~i~gp~gg~F~~~-~~~~~~vlIAgGtGIaP~~s~l~~~~~~ 134 (245)
T cd06200 88 PI---------------GASVALRLRENPGFHLP-DDGRPLILIGNGTGLAGLRSHLRARARA 134 (245)
T ss_pred CC---------------CCEEEEEecCCCcccCC-CCCCCEEEEecCcChHHHHHHHHHHHhc
Confidence 23 38999999876 45432 3457899999999999999999998764
No 62
>PLN02252 nitrate reductase [NADPH]
Probab=99.71 E-value=1.9e-16 Score=192.37 Aligned_cols=176 Identities=15% Similarity=0.249 Sum_probs=131.4
Q ss_pred ccccceEEEEEEEecCCEEEEEEEcCCC---cccCCCcEEEEEeccCCCCeeecCcccCCCC-CCeEEEEEEEc------
Q 003558 598 SSIKAVSIQKVAVYPGNVLALHMSKPDR---FRYKSGQYMFVNCAAVSPFEWHPFSITSAPD-DDYLSVHIRTL------ 667 (811)
Q Consensus 598 ~~~~~~~i~~v~~~~~~v~~l~l~~p~~---~~~~pGQyv~l~~p~~s~~e~HPFSIas~p~-~~~l~~~Ik~~------ 667 (811)
..+..++|++++.+++++..|+|..|.. +.++|||||+|.++..+....||||++|.++ ++.++|+||..
T Consensus 632 ~~~~~~~Lv~k~~lS~d~~~f~f~lp~~~~~lgl~pGQhV~l~~~~~g~~~~R~YSpaS~~~~~g~lel~VK~~~~~~~~ 711 (888)
T PLN02252 632 REKIPCRLVEKISLSHDVRLFRFALPSEDHVLGLPVGKHVFLCATINGKLCMRAYTPTSSDDEVGHFELVIKVYFKNVHP 711 (888)
T ss_pred CceEEEEEEEEEEccCCeEEEEEEECCCcccCCCCCCCEEEEEEecCCeEEEeeeEecccCCCCCEEEEEEEEEeccccC
Confidence 3467889999999999999999997754 5789999999999755555789999999985 57999999987
Q ss_pred -----CCccHhHHHHhhhccCCCCCCCcccccccCCCCCCCCEEEEEcccCCCCC--------C--CCCCCeEEEEEeCc
Q 003558 668 -----GDWTRQLRTVFSEVCRPPPNGISGLLRAEGHNNPDFPRVLIDGPYGAPAQ--------D--YKEYEVVLLVGLGI 732 (811)
Q Consensus 668 -----g~~T~~L~~~~~~~~~~~~~G~sg~~~~~~~~~~~~~~v~idGPyG~~~~--------~--~~~~~~vllIagGi 732 (811)
|..|+.|.+ + ++| +.|.|.||+|.+.. + ....++++|||||+
T Consensus 712 ~~p~gG~~S~~L~~-L-------~vG---------------d~V~V~GP~G~f~y~g~G~f~l~~~~~~~~~vvmIAGGs 768 (888)
T PLN02252 712 KFPNGGLMSQYLDS-L-------PIG---------------DTIDVKGPLGHIEYAGRGSFLVNGKPKFAKKLAMLAGGT 768 (888)
T ss_pred ccCCCCchhhHHhc-C-------CCC---------------CEEEEecCccceeecccceeeeccccccCceEEEEecce
Confidence 556766632 2 334 88999999998632 1 12357899999999
Q ss_pred CHHHHHHHHHHHHHhc------------ccchhh-HHHHHHHhhhcCCC--eEEEEEcCCC-CCCCcccCccccCCHHHH
Q 003558 733 GATPMISIVKDIVNNM------------KAIEEE-EENDLENGRDTGVN--TTIIIIDNNY-EPFFFWTQKKGPIQDKKS 796 (811)
Q Consensus 733 GITP~lsil~~l~~~~------------~~~~~~-~~~el~~~~~~~~~--~~i~v~~~~~-~~~~~w~g~~G~i~~~~~ 796 (811)
||||+++++++++... ++.+++ +.+++.++..++++ .++++++++. ++ |.|.+|+|++...
T Consensus 769 GITPi~silr~ll~~~~d~t~i~Liyg~Rt~~Dil~~eEL~~la~~~p~~~~v~~vls~~~~~~---w~g~~GrV~~~ll 845 (888)
T PLN02252 769 GITPMYQVIQAILRDPEDKTEMSLVYANRTEDDILLREELDRWAAEHPDRLKVWYVVSQVKREG---WKYSVGRVTEAML 845 (888)
T ss_pred ehhHHHHHHHHHHhccCCCCcEEEEEEECCHHHhhHHHHHHHHHHhCCCCEEEEEEecCCCcCC---CCCcCCcCCHHHH
Confidence 9999999999998642 222333 45566555555533 3455666544 55 9999999999866
Q ss_pred HHh
Q 003558 797 ILL 799 (811)
Q Consensus 797 ~~~ 799 (811)
+.+
T Consensus 846 ~~~ 848 (888)
T PLN02252 846 REH 848 (888)
T ss_pred HHh
Confidence 544
No 63
>KOG0534 consensus NADH-cytochrome b-5 reductase [Coenzyme transport and metabolism; Energy production and conversion]
Probab=99.69 E-value=4.9e-16 Score=164.30 Aligned_cols=180 Identities=18% Similarity=0.261 Sum_probs=143.6
Q ss_pred cccceEEEEEEEecCCEEEEEEEcCC---CcccCCCcEEEEEeccCCCCeeecCcccCCCCC-CeEEEEEEEc--CCccH
Q 003558 599 SIKAVSIQKVAVYPGNVLALHMSKPD---RFRYKSGQYMFVNCAAVSPFEWHPFSITSAPDD-DYLSVHIRTL--GDWTR 672 (811)
Q Consensus 599 ~~~~~~i~~v~~~~~~v~~l~l~~p~---~~~~~pGQyv~l~~p~~s~~e~HPFSIas~p~~-~~l~~~Ik~~--g~~T~ 672 (811)
.++.+++.+.+.++.|+..++|..|. .+....|||+++.+|..+....||||..|.+.+ +++.+.||.. |..|+
T Consensus 50 ~~~~~~l~~k~~~shdt~~f~f~lp~~~~~l~lp~g~hv~~~~~i~g~~vvRpYTPvs~~~~~g~~~l~VK~Y~~G~mS~ 129 (286)
T KOG0534|consen 50 SYYPFRLIDKTELSHDTSLFRFVLPSADHVLGLPIGQHVVLKAPIGGKLVVRPYTPVSLDDDKGYFDLVVKVYPKGKMSQ 129 (286)
T ss_pred ceEEEEEEEEEeccCCceeEEEecCCchhccCcccceEEEEEecCCCcEEEEecCCccCccccceEEEEEEeccCCcccH
Confidence 36788999999999999999998874 467899999999999988889999999999866 7999999987 55666
Q ss_pred hHHHHhhhccCCCCCCCcccccccCCCCCCCCEEEEEcccCCCCCCCCCCCeEEEEEeCcCHHHHHHHHHHHHHhccc--
Q 003558 673 QLRTVFSEVCRPPPNGISGLLRAEGHNNPDFPRVLIDGPYGAPAQDYKEYEVVLLVGLGIGATPMISIVKDIVNNMKA-- 750 (811)
Q Consensus 673 ~L~~~~~~~~~~~~~G~sg~~~~~~~~~~~~~~v~idGPyG~~~~~~~~~~~vllIagGiGITP~lsil~~l~~~~~~-- 750 (811)
.|.. ++.| +.|.+.||.|.+..+...++++.|||||+|||||++++++++.+..+
T Consensus 130 ~l~~--------LkiG---------------d~ve~rGP~G~~~~~~~~~~~l~miAgGtGItPmlqii~~il~~~~d~t 186 (286)
T KOG0534|consen 130 HLDS--------LKIG---------------DTVEFRGPIGEFKYDPQKAKHLGMIAGGTGITPMLQLIRAILKDPEDTT 186 (286)
T ss_pred HHhc--------CCCC---------------CEEEEecCccceEecCCCcceEEEEecccchhhHHHHHHHHhcCCCCCc
Confidence 5543 2444 89999999999876666689999999999999999999999987442
Q ss_pred ----------chhh-HHHHHHHhhhcCCC--eEEEEEcCCCCCCCcccCccccCCHHHHH-Hhhcccc
Q 003558 751 ----------IEEE-EENDLENGRDTGVN--TTIIIIDNNYEPFFFWTQKKGPIQDKKSI-LLLGYKR 804 (811)
Q Consensus 751 ----------~~~~-~~~el~~~~~~~~~--~~i~v~~~~~~~~~~w~g~~G~i~~~~~~-~~~~~~~ 804 (811)
.+++ +.+++..+..+++. ...++++.+.+. |+|..|+|+++.+. .+....+
T Consensus 187 ki~lly~N~te~DILlr~eL~~la~~~p~rf~~~y~v~~~~~~---w~~~~g~It~~~i~~~l~~~~~ 251 (286)
T KOG0534|consen 187 KISLLYANKTEDDILLREELEELASKYPERFKVWYVVDQPPEI---WDGSVGFITKDLIKEHLPPPKE 251 (286)
T ss_pred EEEEEEecCCccccchHHHHHHHHhhCcceEEEEEEEcCCccc---ccCccCccCHHHHHhhCCCCCC
Confidence 2333 56667777777773 455677777777 99999999998655 4444444
No 64
>cd06182 CYPOR_like NADPH cytochrome p450 reductase (CYPOR) serves as an electron donor in several oxygenase systems and is a component of nitric oxide synthases and methionine synthase reductases. CYPOR transfers two electrons from NADPH to the heme of cytochrome p450 via FAD and FMN. CYPOR has a C-terminal ferredoxin reducatase (FNR)- like FAD and NAD binding module, an FMN-binding domain, and an additional conecting domain (inserted within the FAD binding region) that orients the FNR and FMN binding domains. Ferredoxin-NADP+ (oxido)reductase is an FAD-containing enzyme that catalyzes the reversible electron transfer between NADP(H) and electron carrier proteins such as ferredoxin and flavodoxin. Isoforms of these flavoproteins (i.e. having a non-covalently bound FAD as a prosthetic group) are present in chloroplasts, mitochondria, and bacteria and participate in a wide variety of redox metabolic pathways. The C-terminal domain contains most of the NADP(H) binding residues and the N-t
Probab=99.69 E-value=5.4e-16 Score=165.94 Aligned_cols=110 Identities=19% Similarity=0.287 Sum_probs=91.5
Q ss_pred cCCEEEEEEEcC--CCcccCCCcEEEEEeccCCCCeeecCcccCCCCC--CeEEEEEEEc-----------CCccHhHHH
Q 003558 612 PGNVLALHMSKP--DRFRYKSGQYMFVNCAAVSPFEWHPFSITSAPDD--DYLSVHIRTL-----------GDWTRQLRT 676 (811)
Q Consensus 612 ~~~v~~l~l~~p--~~~~~~pGQyv~l~~p~~s~~e~HPFSIas~p~~--~~l~~~Ik~~-----------g~~T~~L~~ 676 (811)
+.++.+++|..| ..++|+||||+.|.+|. ....|||||+|.|++ +.++|+||.. |..|..|.+
T Consensus 14 ~~~v~~l~l~~~~~~~~~~~pGQ~v~l~~~~--~~~~R~ySias~p~~~~~~l~l~Ik~~~~~~~~~~~~~G~~S~~L~~ 91 (267)
T cd06182 14 PRSTRHLEFDLSGNSVLKYQPGDHLGVIPPN--PLQPRYYSIASSPDVDPGEVHLCVRVVSYEAPAGRIRKGVCSNFLAG 91 (267)
T ss_pred CCceEEEEEecCCCCcCccCCCCEEEEecCC--CCCCeeEeecCCCCCCCCEEEEEEEEEEEecCCCCeeccchhHHHhh
Confidence 347999999988 57889999999999875 346899999999864 8999999987 667777653
Q ss_pred HhhhccCCCCCCCcccccccCCCCCCCCEEEEEcccC-CCCCCCCCCCeEEEEEeCcCHHHHHHHHHHHHH
Q 003558 677 VFSEVCRPPPNGISGLLRAEGHNNPDFPRVLIDGPYG-APAQDYKEYEVVLLVGLGIGATPMISIVKDIVN 746 (811)
Q Consensus 677 ~~~~~~~~~~~G~sg~~~~~~~~~~~~~~v~idGPyG-~~~~~~~~~~~vllIagGiGITP~lsil~~l~~ 746 (811)
+ ++| +.|.|.||+| .+..+....+++||||||+||||++||+++++.
T Consensus 92 -l-------k~G---------------d~v~v~~p~G~~f~l~~~~~~~~vlIAgGtGIaP~~s~l~~~~~ 139 (267)
T cd06182 92 -L-------QLG---------------AKVTVFIRPAPSFRLPKDPTTPIIMVGPGTGIAPFRGFLQERAA 139 (267)
T ss_pred -C-------CCC---------------CEEEEEEecCCcccCCCCCCCCEEEEecCccHHHHHHHHHHHHH
Confidence 2 233 8899999999 776544446789999999999999999999986
No 65
>PF08414 NADPH_Ox: Respiratory burst NADPH oxidase; InterPro: IPR013623 This domain is found in plant proteins such as respiratory burst NADPH oxidase proteins which produce reactive oxygen species as a defence mechanism. It tends to occur to the N terminus of an EF-hand (IPR002048 from INTERPRO), which suggests a direct regulatory effect of Ca2+ on the activity of the NADPH oxidase in plants []. ; GO: 0004601 peroxidase activity, 0050664 oxidoreductase activity, acting on NADH or NADPH, oxygen as acceptor, 0055114 oxidation-reduction process; PDB: 3A8R_A.
Probab=99.68 E-value=6.6e-17 Score=141.00 Aligned_cols=99 Identities=71% Similarity=1.205 Sum_probs=76.6
Q ss_pred ccccCchhHHHHHhhhhhhhccCCc-ccHHHHHHHHHhHccCCCCceehhhhcccccCCCCCHHHHHHHHHHHHccCCCC
Q 003558 142 RFDRNKSAAAYALKGLKFISKTDGG-AGWANVEKRFDEITASTNGVLPRARFGECIGMNKDSKDFAVELFDALTRRRNIQ 220 (811)
Q Consensus 142 ~~dr~~s~a~~alk~l~~i~~~~~~-~~~~~l~~~F~~lD~d~dG~Is~~ef~~~lg~~~~~~~~~~~lf~~l~d~d~~~ 220 (811)
++||++|+|.+||++|+||.++... +.|.+++++|+++.. ||.|++++|.+|+||++ +++|+.+||++|.+++++.
T Consensus 1 rldRt~S~A~~ALkGLrFIskt~~~~~~W~~VE~RFd~La~--dG~L~rs~Fg~CIGM~d-SkeFA~eLFdALaRrr~i~ 77 (100)
T PF08414_consen 1 RLDRTKSGAQRALKGLRFISKTTGGADGWKEVEKRFDKLAK--DGLLPRSDFGECIGMKD-SKEFAGELFDALARRRGIK 77 (100)
T ss_dssp -----HHHHHHHHHHHHHHHHHH-----HHHHHHHHHHH-B--TTBEEGGGHHHHHT--S--HHHHHHHHHHHHHHTT--
T ss_pred CCCcchhHHHHHHhcccceecCCCCccCHHHHHHHHHHhCc--CCcccHHHHHHhcCCcc-cHHHHHHHHHHHHHhcCCc
Confidence 5799999999999999999988765 489999999999995 99999999999999998 9999999999999999888
Q ss_pred CCceeHHHHHHHHHHhccCChHH
Q 003558 221 GDTITKDQLREFWDQISDQSFDS 243 (811)
Q Consensus 221 ~G~I~~~EF~~~~~~l~~~~~~e 243 (811)
.+.|+.+|+.++|.++.++++|.
T Consensus 78 ~~~I~k~eL~efW~qisD~sFDs 100 (100)
T PF08414_consen 78 GDSITKDELKEFWEQISDQSFDS 100 (100)
T ss_dssp SSEE-HHHHHHHHHHHH---HHH
T ss_pred cCCcCHHHHHHHHHHhhccCCCC
Confidence 89999999999999999888763
No 66
>TIGR03224 benzo_boxA benzoyl-CoA oxygenase/reductase, BoxA protein. Members of this protein family are BoxA, the A component of the BoxAB benzoyl-CoA oxygenase/reductase. This oxygen-requiring enzyme acts in an aerobic pathway of benzoate catabolism via coenzyme A ligation. BoxA is a homodimeric iron-sulphur-flavoprotein and acts as an NADPH-dependent reductase for BoxB.
Probab=99.68 E-value=9.1e-16 Score=173.51 Aligned_cols=167 Identities=16% Similarity=0.208 Sum_probs=117.5
Q ss_pred cceEEEEEEEec-----CCEEEEEEEcCC-CcccCCCcEEEEEeccC----CCCeeecCcccCCCCC-----CeEEEEEE
Q 003558 601 KAVSIQKVAVYP-----GNVLALHMSKPD-RFRYKSGQYMFVNCAAV----SPFEWHPFSITSAPDD-----DYLSVHIR 665 (811)
Q Consensus 601 ~~~~i~~v~~~~-----~~v~~l~l~~p~-~~~~~pGQyv~l~~p~~----s~~e~HPFSIas~p~~-----~~l~~~Ik 665 (811)
...+|+.++.++ +++..|++..+. .+.|+||||+.|.+|.. .+..+|||||+|.|++ +.++|+||
T Consensus 143 ~~a~V~~~~~l~~~~~~~~v~~l~L~~~~~~~~~~pGQfv~l~~pg~~~~g~~~~~R~YSIas~~~~~~~~~~~l~l~Vk 222 (411)
T TIGR03224 143 ITATVVGNYRLTDEDASSDIHHIVLDFGSHPFPVLEGQSIGILPPGTDASGKPHYARMYSVASPRNGERPGYNNLALTVK 222 (411)
T ss_pred eEEEEeeeEEccCCCCCCceEEEEEeCCCCcCCccCCcEEEEecCCcCcCCCcCcceeeeecCCCCccCCCCCEEEEEEE
Confidence 457888888884 499999999876 68899999999998853 2346899999998732 47999999
Q ss_pred Ec----------CCccHhHHHHhhhccCCCCCCCcccccccCCCCCCCCEEEEEcccCCCCC-CCCCCCeEEEEEeCcCH
Q 003558 666 TL----------GDWTRQLRTVFSEVCRPPPNGISGLLRAEGHNNPDFPRVLIDGPYGAPAQ-DYKEYEVVLLVGLGIGA 734 (811)
Q Consensus 666 ~~----------g~~T~~L~~~~~~~~~~~~~G~sg~~~~~~~~~~~~~~v~idGPyG~~~~-~~~~~~~vllIagGiGI 734 (811)
.. |..|+.|.+ + ++| ++|.|.||||.+.. +.....++||||||+||
T Consensus 223 ~v~~~~~g~~~~G~~S~~L~~-l-------k~G---------------d~v~v~GP~G~~f~lp~~~~~~lllIagGtGI 279 (411)
T TIGR03224 223 RVTTDHQGNAVRGVASNYLCD-L-------KKG---------------DKVQVIGPFGSTFLMPNHPESSIMMICTGTGS 279 (411)
T ss_pred EEEecCCCCcCcccchhHHhc-C-------CCc---------------CEEEEEeccCCcccCCCCCCCCEEEEecccCc
Confidence 86 556776655 2 344 89999999998543 22234689999999999
Q ss_pred HHHHHHHHHHHHhc--------------ccchhh-HHHHHHHhhhcCCCeEEEEEcCCCCCCCcccCccccCCHHHHH
Q 003558 735 TPMISIVKDIVNNM--------------KAIEEE-EENDLENGRDTGVNTTIIIIDNNYEPFFFWTQKKGPIQDKKSI 797 (811)
Q Consensus 735 TP~lsil~~l~~~~--------------~~~~~~-~~~el~~~~~~~~~~~i~v~~~~~~~~~~w~g~~G~i~~~~~~ 797 (811)
||++||++++.... ++.+++ +.+++.++....++.. ++.+++.+ +.+|+|++.+.+
T Consensus 280 AP~~s~l~~~~~~~~~~~~~~v~L~~G~Rt~~dl~y~~eL~~l~~~~~~~~-~~~sr~~~------~~~g~V~d~l~~ 350 (411)
T TIGR03224 280 APMRAMTERRRRRRDHGEGGKLMLFFGARTKEELPYFGPLQKLPKDFIDIN-FAFSRTPE------QPKRYVQDAIRE 350 (411)
T ss_pred HHHHHHHHHHHHHhhcCCCCCEEEEEecCccccchHHHHHHHHHhcCceEE-EEeccCCc------cCcccHhhHHHH
Confidence 99999999987531 122233 3455555544444433 34444332 346888876544
No 67
>cd06185 PDR_like Phthalate dioxygenase reductase (PDR) is an FMN-dependent reductase that mediates electron transfer from NADH to FMN to an iron sulfur cluster. PDR has an an N-terminal ferrredoxin reductase (FNR)-like NAD(H) binding domain and a C-terminal iron-sulfur [2Fe-2S] cluster domain. Although structurally homologous to FNR, PDR binds FMN rather than FAD in it's FNR-like domain. Electron transfer between pyrimidines and iron-sulfur clusters (Rieske center [2Fe-2S]) or heme groups is mediated by flavins in respiration, photosynthesis, and oxygenase systems. Type I dioxygenase systems, including the hydroxylate phthalate system, have 2 components, a monomeric reductase consisting of a flavin and a 2Fe-2S center and a multimeric oxygenase. In contrast to other Rieske dioxygenases the ferredoxin like domain is C-, not N-terminal.
Probab=99.67 E-value=9.6e-16 Score=158.05 Aligned_cols=115 Identities=17% Similarity=0.301 Sum_probs=94.4
Q ss_pred EEEEecCCEEEEEEEcCCCc---ccCCCcEEEEEeccCCCCeeecCcccCCCCC-CeEEEEEEEcCC---ccHhHHHHhh
Q 003558 607 KVAVYPGNVLALHMSKPDRF---RYKSGQYMFVNCAAVSPFEWHPFSITSAPDD-DYLSVHIRTLGD---WTRQLRTVFS 679 (811)
Q Consensus 607 ~v~~~~~~v~~l~l~~p~~~---~~~pGQyv~l~~p~~s~~e~HPFSIas~p~~-~~l~~~Ik~~g~---~T~~L~~~~~ 679 (811)
+++.+++++++++++.|... .|+||||+.|++|. ...|||||+|.|.+ +.+.|+||..++ .|..|.+.+
T Consensus 2 ~~~~~~~~~~~~~l~~~~~~~~~~~~pGQ~~~l~~~~---~~~r~ySi~s~~~~~~~l~~~v~~~~~g~~~s~~l~~~~- 77 (211)
T cd06185 2 RIRDEAPDIRSFELEAPDGAPLPAFEPGAHIDVHLPN---GLVRQYSLCGDPADRDRYRIAVLREPASRGGSRYMHELL- 77 (211)
T ss_pred ceEEcCCCeEEEEEEeCCCCcCCCCCCCceEEEEcCC---CCceeeeccCCCCCCCEEEEEEEeccCCCchHHHHHhcC-
Confidence 46778899999999988753 89999999999986 26799999999865 899999998763 566665432
Q ss_pred hccCCCCCCCcccccccCCCCCCCCEEEEEcccCCCCCCCCCCCeEEEEEeCcCHHHHHHHHHHHHHh
Q 003558 680 EVCRPPPNGISGLLRAEGHNNPDFPRVLIDGPYGAPAQDYKEYEVVLLVGLGIGATPMISIVKDIVNN 747 (811)
Q Consensus 680 ~~~~~~~~G~sg~~~~~~~~~~~~~~v~idGPyG~~~~~~~~~~~vllIagGiGITP~lsil~~l~~~ 747 (811)
++| +++.|.||||.+... ...+++|+||||+||||++|+++++...
T Consensus 78 ------~~G---------------d~v~i~gP~g~f~~~-~~~~~~v~ia~GtGiap~~~il~~~~~~ 123 (211)
T cd06185 78 ------RVG---------------DELEVSAPRNLFPLD-EAARRHLLIAGGIGITPILSMARALAAR 123 (211)
T ss_pred ------CCC---------------CEEEEcCCccCCcCC-CCCCcEEEEeccchHhHHHHHHHHHHhC
Confidence 233 889999999988653 2457899999999999999999998864
No 68
>PRK12778 putative bifunctional 2-polyprenylphenol hydroxylase/glutamate synthase subunit beta; Provisional
Probab=99.67 E-value=9.8e-16 Score=186.57 Aligned_cols=163 Identities=23% Similarity=0.374 Sum_probs=122.7
Q ss_pred eEEEEEEEecCCEEEEEEEcCC-CcccCCCcEEEEEeccCCCCeeecCcccCCC-CCCeEEEEEEEcCCccHhHHHHhhh
Q 003558 603 VSIQKVAVYPGNVLALHMSKPD-RFRYKSGQYMFVNCAAVSPFEWHPFSITSAP-DDDYLSVHIRTLGDWTRQLRTVFSE 680 (811)
Q Consensus 603 ~~i~~v~~~~~~v~~l~l~~p~-~~~~~pGQyv~l~~p~~s~~e~HPFSIas~p-~~~~l~~~Ik~~g~~T~~L~~~~~~ 680 (811)
++|.+++.+++++..|+|..|. ...++||||+.|+++..+ +.|||||+|.| +++.++|+||..|..|..|.++
T Consensus 2 ~~I~~~~~~t~~v~~l~l~~p~~~~~~~pGQFv~l~~~~~~--~~rp~Si~~~~~~~g~i~~~vk~vG~~T~~L~~l--- 76 (752)
T PRK12778 2 NKIVEKEIFSEKVFLLEIEAPLIAKSRKPGQFVIVRVGEKG--ERIPLTIADADPEKGTITLVIQEVGLSTTKLCEL--- 76 (752)
T ss_pred CEEEEEEEEcCCEEEEEEeCCchhccCCCCeeEEEEeCCCC--CeeEEEeeeeCCCCCEEEEEEEEcCchHHHHhcC---
Confidence 4688889999999999999876 357999999999997543 57999999987 4678999999999999988642
Q ss_pred ccCCCCCCCcccccccCCCCCCCCEE-EEEcccCCCCCCCCCCCeEEEEEeCcCHHHHHHHHHHHHHhc---------cc
Q 003558 681 VCRPPPNGISGLLRAEGHNNPDFPRV-LIDGPYGAPAQDYKEYEVVLLVGLGIGATPMISIVKDIVNNM---------KA 750 (811)
Q Consensus 681 ~~~~~~~G~sg~~~~~~~~~~~~~~v-~idGPyG~~~~~~~~~~~vllIagGiGITP~lsil~~l~~~~---------~~ 750 (811)
++| +.+ .|.||||.+... ...++++|||||+||||++++++++..+. ++
T Consensus 77 -----~~G---------------d~v~~v~GP~G~~~~~-~~~~~~llvaGG~GiaPl~~l~~~l~~~~~~v~l~~g~r~ 135 (752)
T PRK12778 77 -----NEG---------------DYITDVVGPLGNPSEI-ENYGTVVCAGGGVGVAPMLPIVKALKAAGNRVITILGGRS 135 (752)
T ss_pred -----CCC---------------CEeCeEeCCCCCCccC-CCCCeEEEEECCEeHHHHHHHHHHHHHCCCeEEEEeccCC
Confidence 234 788 799999998753 34579999999999999999999998753 22
Q ss_pred chhhHHHHHHHhhhcCCCeEEEEEcCCCCCCCcccCccccCCHHHHHHhh
Q 003558 751 IEEEEENDLENGRDTGVNTTIIIIDNNYEPFFFWTQKKGPIQDKKSILLL 800 (811)
Q Consensus 751 ~~~~~~~el~~~~~~~~~~~i~v~~~~~~~~~~w~g~~G~i~~~~~~~~~ 800 (811)
.+++++.+.+...... ++++.+ ++ |.|.+|++++.+.+.+.
T Consensus 136 ~~~l~~~~el~~~~~~----~~~~t~--dg---~~g~~G~v~~~l~~~~~ 176 (752)
T PRK12778 136 KELIILEDEMRESSDE----VIIMTD--DG---SYGRKGLVTDGLEEVIK 176 (752)
T ss_pred HHHhhhHHHHHhhcCe----EEEEEC--CC---CCCCcccHHHHHHHHhh
Confidence 3333433333322221 233332 34 78999999987666553
No 69
>cd06201 SiR_like2 Cytochrome p450- like alpha subunits of E. coli sulfite reductase (SiR) multimerize with beta subunits to catalyze the NADPH dependent reduction of sulfite to sulfide. Beta subunits have an Fe4S4 cluster and a siroheme, while the alpha subunits (cysJ gene) are of the cytochrome p450 (CyPor) family having FAD and FMN as prosthetic groups and utilizing NADPH. Cypor (including cyt -450 reductase, nitric oxide synthase, and methionine synthase reductase) are ferredoxin reductase (FNR)-like proteins with an additional N-terminal FMN domain and a connecting sub-domain inserted within the flavin binding portion of the FNR-like domain. The connecting domain orients the N-terminal FMN domain with the C-terminal FNR domain. NADPH cytochrome p450 reductase (CYPOR) serves as an electron donor in several oxygenase systems and is a component of nitric oxide synthases and methionine synthase reductases. CYPOR transfers two electrons from NADPH to the heme of cytochrome p450 via F
Probab=99.65 E-value=5e-15 Score=160.34 Aligned_cols=144 Identities=17% Similarity=0.209 Sum_probs=108.0
Q ss_pred cccceEEEEEEEec----CCEEEEEEEcCC-------CcccCCCcEEEEEeccCCCCeeecCcccCCCCCCeEEEEEEE-
Q 003558 599 SIKAVSIQKVAVYP----GNVLALHMSKPD-------RFRYKSGQYMFVNCAAVSPFEWHPFSITSAPDDDYLSVHIRT- 666 (811)
Q Consensus 599 ~~~~~~i~~v~~~~----~~v~~l~l~~p~-------~~~~~pGQyv~l~~p~~s~~e~HPFSIas~p~~~~l~~~Ik~- 666 (811)
.+.+++|++.+.++ +++..++|..|. ...|+||||+.|..+.. ...|||||+|.|+++.++|+||.
T Consensus 44 ~~~~~~l~~~~~~~~~~~~~~~~l~l~~~~~~~~~~~~~~~~pGQ~v~v~~~g~--~~~R~YSias~p~~g~l~l~Vk~~ 121 (289)
T cd06201 44 RTKALELVERKDYGAAVQAPTAILRFKPAKRKLSGKGLPSFEAGDLLGILPPGS--DVPRFYSLASSSSDGFLEICVRKH 121 (289)
T ss_pred CccceEEEeeeecCCCCCCccEEEEEeCCCcccccCCCCCcCccCEEEEecCCC--CCCceEecCCCCCCCeEEEEEEeC
Confidence 35678899999888 599999999876 46799999999986543 35799999999988899999998
Q ss_pred -cCCccHhHHHHhhhccCCCCCCCcccccccCCCCCCCCEEEEE-cccCCCCCCCCCCCeEEEEEeCcCHHHHHHHHHHH
Q 003558 667 -LGDWTRQLRTVFSEVCRPPPNGISGLLRAEGHNNPDFPRVLID-GPYGAPAQDYKEYEVVLLVGLGIGATPMISIVKDI 744 (811)
Q Consensus 667 -~g~~T~~L~~~~~~~~~~~~~G~sg~~~~~~~~~~~~~~v~id-GPyG~~~~~~~~~~~vllIagGiGITP~lsil~~l 744 (811)
.|..|..|.+ + ++| +.|.+. +|+|.|..+ ...+++||||||+||||++||+++.
T Consensus 122 ~~G~~S~~L~~-l-------~~G---------------d~v~v~~~~~g~F~~~-~~~~~lvlIAgGtGIaP~~s~l~~~ 177 (289)
T cd06201 122 PGGLCSGYLHG-L-------KPG---------------DTIKAFIRPNPSFRPA-KGAAPVILIGAGTGIAPLAGFIRAN 177 (289)
T ss_pred CCccchhhHhh-C-------CCc---------------CEEEEEeccCCCccCC-CCCCCEEEEecCcCHHHHHHHHHhh
Confidence 5677887764 3 234 788887 478888653 4457899999999999999999986
Q ss_pred HHh--------cccch-hh-HHHHHHHhhhcCCC
Q 003558 745 VNN--------MKAIE-EE-EENDLENGRDTGVN 768 (811)
Q Consensus 745 ~~~--------~~~~~-~~-~~~el~~~~~~~~~ 768 (811)
... .++.+ +. +.+++.++...+.+
T Consensus 178 ~~~~~v~L~~g~r~~~~d~~~~~eL~~l~~~~~~ 211 (289)
T cd06201 178 AARRPMHLYWGGRDPASDFLYEDELDQYLADGRL 211 (289)
T ss_pred hccCCEEEEEEecCcccchHHHHHHHHHHHcCCC
Confidence 322 23332 33 45555555555544
No 70
>PRK12779 putative bifunctional glutamate synthase subunit beta/2-polyprenylphenol hydroxylase; Provisional
Probab=99.62 E-value=8.7e-15 Score=180.23 Aligned_cols=173 Identities=15% Similarity=0.181 Sum_probs=125.0
Q ss_pred cccceEEEEEEEecCCEEEEEEEcCCC-cccCCCcEEEEEeccCCCCeeecCcccCCC-CCCeEEEEEEEcCCccHhHHH
Q 003558 599 SIKAVSIQKVAVYPGNVLALHMSKPDR-FRYKSGQYMFVNCAAVSPFEWHPFSITSAP-DDDYLSVHIRTLGDWTRQLRT 676 (811)
Q Consensus 599 ~~~~~~i~~v~~~~~~v~~l~l~~p~~-~~~~pGQyv~l~~p~~s~~e~HPFSIas~p-~~~~l~~~Ik~~g~~T~~L~~ 676 (811)
.+..++|.+++.+++++..+++..|.. ..++||||+.|.++..+ +.|||||++.| +++.++|+||..|..|..|.+
T Consensus 647 ~~~~~~I~~~~~lt~dv~~~~l~~p~~~~~~~PGQFv~L~~~~~g--e~rP~SIas~~~~~g~i~l~Vk~vG~~T~~L~~ 724 (944)
T PRK12779 647 GQIPQTIVGKVQLAGGIVEFTVRAPMVARSAQAGQFVRVLPWEKG--ELIPLTLADWDAEKGTIDLVVQGMGTSSLEINR 724 (944)
T ss_pred cceEEEEEEEEEecCCEEEEEEeCCCccccCCCCceEEEEeCCCC--CEEeEEccCCCCCCCEEEEEEEeeccHHHHHhc
Confidence 356789999999999999999988764 47999999999986444 57999999987 467899999999987765543
Q ss_pred HhhhccCCCCCCCcccccccCCCCCCCCEEE-EEcccCCCCCCC--CCCCeEEEEEeCcCHHHHHHHHHHHHHhc-----
Q 003558 677 VFSEVCRPPPNGISGLLRAEGHNNPDFPRVL-IDGPYGAPAQDY--KEYEVVLLVGLGIGATPMISIVKDIVNNM----- 748 (811)
Q Consensus 677 ~~~~~~~~~~~G~sg~~~~~~~~~~~~~~v~-idGPyG~~~~~~--~~~~~vllIagGiGITP~lsil~~l~~~~----- 748 (811)
+ ++| +.+. |.||+|.+.... ...+++||||||+||||++++++++.+..
T Consensus 725 -l-------k~G---------------d~l~~I~GPlG~~f~~~~~~~~~~vllIAGGiGIAPl~sl~r~l~~~g~~V~l 781 (944)
T PRK12779 725 -M-------AIG---------------DAFSGIAGPLGRASELHRYEGNQTVVFCAGGVGLPPVYPIMRAHLRLGNHVTL 781 (944)
T ss_pred -C-------CCc---------------CEEeeeecCCCCCcCCccccCCCcEEEEEccEeHHHHHHHHHHHHHCCCCEEE
Confidence 2 334 7885 999999985311 22368999999999999999999988653
Q ss_pred ----ccchhhHHHH----HHHhhhcCCC-eEEEEEcCCCCCCCcccCccccCCHHHHHHhhc
Q 003558 749 ----KAIEEEEEND----LENGRDTGVN-TTIIIIDNNYEPFFFWTQKKGPIQDKKSILLLG 801 (811)
Q Consensus 749 ----~~~~~~~~~e----l~~~~~~~~~-~~i~v~~~~~~~~~~w~g~~G~i~~~~~~~~~~ 801 (811)
++.+++++.+ +.++.....+ ..++++++ ++ |.|.+|++++.+.+.+.+
T Consensus 782 i~G~Rs~edl~~~del~~L~~la~~~~~~~~v~~ttd--dg---s~G~~G~Vt~~l~~ll~~ 838 (944)
T PRK12779 782 ISGFRAKEFLFWTGDDERVGKLKAEFGDQLDVIYTTN--DG---SFGVKGFVTGPLEEMLKA 838 (944)
T ss_pred EEEeCCHHHhhhHHHHHHHHHHHHHcCCCeEEEEEec--CC---CCCCccccChHHHHHHHh
Confidence 2233344322 2223333332 34444543 34 679999999876555543
No 71
>PTZ00183 centrin; Provisional
Probab=99.62 E-value=5.2e-15 Score=144.90 Aligned_cols=144 Identities=11% Similarity=0.224 Sum_probs=117.8
Q ss_pred cCCcccHHHHHHHHHhHccCCCCceehhhhcccc---cCCCCCHHHHHHHHHHHHccCCCCCCceeHHHHHHHHHHh-cc
Q 003558 163 TDGGAGWANVEKRFDEITASTNGVLPRARFGECI---GMNKDSKDFAVELFDALTRRRNIQGDTITKDQLREFWDQI-SD 238 (811)
Q Consensus 163 ~~~~~~~~~l~~~F~~lD~d~dG~Is~~ef~~~l---g~~~~~~~~~~~lf~~l~d~d~~~~G~I~~~EF~~~~~~l-~~ 238 (811)
....++.+++++.|..+|.|++|.|+.+||..++ |... +...+..+|.. .|.++ +|.|+++||..++... ..
T Consensus 10 ~~~~~~~~~~~~~F~~~D~~~~G~i~~~e~~~~l~~~g~~~-~~~~~~~l~~~-~d~~~--~g~i~~~eF~~~~~~~~~~ 85 (158)
T PTZ00183 10 GLTEDQKKEIREAFDLFDTDGSGTIDPKELKVAMRSLGFEP-KKEEIKQMIAD-VDKDG--SGKIDFEEFLDIMTKKLGE 85 (158)
T ss_pred CCCHHHHHHHHHHHHHhCCCCCCcccHHHHHHHHHHhCCCC-CHHHHHHHHHH-hCCCC--CCcEeHHHHHHHHHHHhcC
Confidence 3445677899999999999999999999998877 4555 66778889984 66666 9999999999988764 34
Q ss_pred CChHHHHHHHhhhhcCCCCCceeHHHHHHHHHhhhccCCCcchHHHHHHHHHHHHHHcCCCCCCcccHHHHHHHHHhCCc
Q 003558 239 QSFDSRLQTFFDMVDKDADGRITEDEVREIISLSASANKLSNIQKQAEEYAALIMEELDPDHLGCIMIDNLEMLLLQAPA 318 (811)
Q Consensus 239 ~~~~e~l~~~F~~fDkD~dG~It~eE~~~il~~~~~~~~l~~~~~~~~e~~~~i~~e~D~d~dG~Is~eEF~~~l~~~p~ 318 (811)
...++.++.+|+.+|+|++|+|+.+||..++.... ..++ ++.++.+|..+|.|++|.|+++||..+|...|.
T Consensus 86 ~~~~~~l~~~F~~~D~~~~G~i~~~e~~~~l~~~~--~~l~------~~~~~~~~~~~d~~~~g~i~~~ef~~~~~~~~~ 157 (158)
T PTZ00183 86 RDPREEILKAFRLFDDDKTGKISLKNLKRVAKELG--ETIT------DEELQEMIDEADRNGDGEISEEEFYRIMKKTNL 157 (158)
T ss_pred CCcHHHHHHHHHHhCCCCCCcCcHHHHHHHHHHhC--CCCC------HHHHHHHHHHhCCCCCCcCcHHHHHHHHhcccC
Confidence 45678899999999999999999999999986332 1222 234556899999999999999999999998774
No 72
>PRK12775 putative trifunctional 2-polyprenylphenol hydroxylase/glutamate synthase subunit beta/ferritin domain-containing protein; Provisional
Probab=99.60 E-value=1.5e-14 Score=179.54 Aligned_cols=165 Identities=18% Similarity=0.260 Sum_probs=123.3
Q ss_pred eEEEEEEEecCCEEEEEEEcCC-CcccCCCcEEEEEeccCCCCeeecCcccCCC-CCCeEEEEEEEcCCccHhHHHHhhh
Q 003558 603 VSIQKVAVYPGNVLALHMSKPD-RFRYKSGQYMFVNCAAVSPFEWHPFSITSAP-DDDYLSVHIRTLGDWTRQLRTVFSE 680 (811)
Q Consensus 603 ~~i~~v~~~~~~v~~l~l~~p~-~~~~~pGQyv~l~~p~~s~~e~HPFSIas~p-~~~~l~~~Ik~~g~~T~~L~~~~~~ 680 (811)
++|++.+.+++++..+++..|. ...++|||||.|+++..+ +.+||||++.+ ++++++|.|+..|..|+.|...+
T Consensus 2 ~~I~~~~~l~~~~~~l~l~ap~~a~~~~PGQFV~l~~~~~~--errplSIa~~~~~~g~i~l~vk~vG~~T~~L~~~l-- 77 (1006)
T PRK12775 2 YSIVRREAFSDTTFLWEVEAPDVAASAEPGHFVMLRLYEGA--ERIPLTVADFDRKKGTITMVVQALGKTTREMMTKF-- 77 (1006)
T ss_pred cEEEEEEEecCCEEEEEEecCCcccCCCCCeeEEEEeCCCC--eeEEEEecCcCCCCCEEEEEEEecCcHHHHHHhcC--
Confidence 3688889999999999999886 467999999999997543 57999999876 56789999999999999886543
Q ss_pred ccCCCCCCCcccccccCCCCCCCCEE-EEEcccCCCCCCCCCCCeEEEEEeCcCHHHHHHHHHHHHHhcc---------c
Q 003558 681 VCRPPPNGISGLLRAEGHNNPDFPRV-LIDGPYGAPAQDYKEYEVVLLVGLGIGATPMISIVKDIVNNMK---------A 750 (811)
Q Consensus 681 ~~~~~~~G~sg~~~~~~~~~~~~~~v-~idGPyG~~~~~~~~~~~vllIagGiGITP~lsil~~l~~~~~---------~ 750 (811)
++| +.+ .+.||+|.+.. ....+++||||||+||||++|+++.+.+... +
T Consensus 78 -----k~G---------------d~l~~v~GPlG~~~~-~~~~~~vllVaGGiGIAPl~s~~r~l~~~g~~v~li~g~R~ 136 (1006)
T PRK12775 78 -----KAG---------------DTFEDFVGPLGLPQH-IDKAGHVVLVGGGLGVAPVYPQLRAFKEAGARTTGIIGFRN 136 (1006)
T ss_pred -----CCC---------------CEEeeeecCCCCCCC-CCCCCeEEEEEEhHHHHHHHHHHHHHHhCCCcEEEEEeCCC
Confidence 334 777 69999999864 3446789999999999999999999887532 2
Q ss_pred chhhHHHHHHHhhhcCCCeEEEEEcCCCCCCCcccCccccCCHHHHHHhhc
Q 003558 751 IEEEEENDLENGRDTGVNTTIIIIDNNYEPFFFWTQKKGPIQDKKSILLLG 801 (811)
Q Consensus 751 ~~~~~~~el~~~~~~~~~~~i~v~~~~~~~~~~w~g~~G~i~~~~~~~~~~ 801 (811)
.+.+++.+.+..... .++++.+ ++ |.|.+|++++.+.+.+.+
T Consensus 137 ~~~l~~~del~~~~~----~~~v~td--dg---s~G~~G~vt~~l~~~l~~ 178 (1006)
T PRK12775 137 KDLVFWEDKFGKYCD----DLIVCTD--DG---SYGKPGFVTAALKEVCEK 178 (1006)
T ss_pred hHHcccHHHHHhhcC----cEEEEEC--CC---CCCCCCChHHHHHHHhcc
Confidence 223333333322211 2344433 33 679999999887766643
No 73
>KOG0044 consensus Ca2+ sensor (EF-Hand superfamily) [Signal transduction mechanisms]
Probab=99.59 E-value=4.7e-15 Score=148.44 Aligned_cols=148 Identities=18% Similarity=0.230 Sum_probs=122.4
Q ss_pred ccHHHHHHHHHhHccCCCCceehhhhccccc----CCCCCHHHHHHHHHHHHccCCCCCCceeHHHHHHHHHHhccCChH
Q 003558 167 AGWANVEKRFDEITASTNGVLPRARFGECIG----MNKDSKDFAVELFDALTRRRNIQGDTITKDQLREFWDQISDQSFD 242 (811)
Q Consensus 167 ~~~~~l~~~F~~lD~d~dG~Is~~ef~~~lg----~~~~~~~~~~~lf~~l~d~d~~~~G~I~~~EF~~~~~~l~~~~~~ 242 (811)
.++++.++-|..-+ .+|.++.++|..++. ... ++.+++.+|++ +|.++ +|.|+|.||+.++..+.++..+
T Consensus 26 ~ei~~~Yr~Fk~~c--P~G~~~~~~F~~i~~~~fp~gd-~~~y~~~vF~~-fD~~~--dg~i~F~Efi~als~~~rGt~e 99 (193)
T KOG0044|consen 26 KEIQQWYRGFKNEC--PSGRLTLEEFREIYASFFPDGD-ASKYAELVFRT-FDKNK--DGTIDFLEFICALSLTSRGTLE 99 (193)
T ss_pred HHHHHHHHHhcccC--CCCccCHHHHHHHHHHHCCCCC-HHHHHHHHHHH-hcccC--CCCcCHHHHHHHHHHHcCCcHH
Confidence 45566777777644 699999999999873 233 67889999996 67776 9999999999999999999999
Q ss_pred HHHHHHhhhhcCCCCCceeHHHHHHHHHhhhc---cCCCcchHHHHHHHHHHHHHHcCCCCCCcccHHHHHHHHHhCCcc
Q 003558 243 SRLQTFFDMVDKDADGRITEDEVREIISLSAS---ANKLSNIQKQAEEYAALIMEELDPDHLGCIMIDNLEMLLLQAPAQ 319 (811)
Q Consensus 243 e~l~~~F~~fDkD~dG~It~eE~~~il~~~~~---~~~l~~~~~~~~e~~~~i~~e~D~d~dG~Is~eEF~~~l~~~p~~ 319 (811)
+++..+|++||.|+||+||.+|+-++++.... ....+..++..++.++.+|.++|.|+||.|+++||....+..|+.
T Consensus 100 ekl~w~F~lyD~dgdG~It~~Eml~iv~~i~~m~~~~~~~~~~~~~~~~v~~if~k~D~n~Dg~lT~eef~~~~~~d~~i 179 (193)
T KOG0044|consen 100 EKLKWAFRLYDLDGDGYITKEEMLKIVQAIYQMTGSKALPEDEETPEERVDKIFSKMDKNKDGKLTLEEFIEGCKADPSI 179 (193)
T ss_pred HHhhhhheeecCCCCceEcHHHHHHHHHHHHHHcccccCCcccccHHHHHHHHHHHcCCCCCCcccHHHHHHHhhhCHHH
Confidence 99999999999999999999999999873211 111222245568889999999999999999999999999988876
Q ss_pred c
Q 003558 320 S 320 (811)
Q Consensus 320 ~ 320 (811)
+
T Consensus 180 ~ 180 (193)
T KOG0044|consen 180 L 180 (193)
T ss_pred H
Confidence 4
No 74
>PTZ00184 calmodulin; Provisional
Probab=99.58 E-value=1.7e-14 Score=139.37 Aligned_cols=139 Identities=17% Similarity=0.314 Sum_probs=113.5
Q ss_pred CCcccHHHHHHHHHhHccCCCCceehhhhcccc---cCCCCCHHHHHHHHHHHHccCCCCCCceeHHHHHHHHHHh-ccC
Q 003558 164 DGGAGWANVEKRFDEITASTNGVLPRARFGECI---GMNKDSKDFAVELFDALTRRRNIQGDTITKDQLREFWDQI-SDQ 239 (811)
Q Consensus 164 ~~~~~~~~l~~~F~~lD~d~dG~Is~~ef~~~l---g~~~~~~~~~~~lf~~l~d~d~~~~G~I~~~EF~~~~~~l-~~~ 239 (811)
..+++++++++.|+.+|.|++|.|+.+||..++ +... ..+.+..+|+. .+.++ +|.|+|+||+.++... ...
T Consensus 5 ~~~~~~~~~~~~F~~~D~~~~G~i~~~e~~~~l~~~~~~~-~~~~~~~~~~~-~d~~~--~g~i~~~ef~~~l~~~~~~~ 80 (149)
T PTZ00184 5 LTEEQIAEFKEAFSLFDKDGDGTITTKELGTVMRSLGQNP-TEAELQDMINE-VDADG--NGTIDFPEFLTLMARKMKDT 80 (149)
T ss_pred cCHHHHHHHHHHHHHHcCCCCCcCCHHHHHHHHHHhCCCC-CHHHHHHHHHh-cCcCC--CCcCcHHHHHHHHHHhccCC
Confidence 345677899999999999999999999999876 4445 56778889984 66666 8999999999998765 334
Q ss_pred ChHHHHHHHhhhhcCCCCCceeHHHHHHHHHhhhccCCCcchHHHHHHHHHHHHHHcCCCCCCcccHHHHHHHHH
Q 003558 240 SFDSRLQTFFDMVDKDADGRITEDEVREIISLSASANKLSNIQKQAEEYAALIMEELDPDHLGCIMIDNLEMLLL 314 (811)
Q Consensus 240 ~~~e~l~~~F~~fDkD~dG~It~eE~~~il~~~~~~~~l~~~~~~~~e~~~~i~~e~D~d~dG~Is~eEF~~~l~ 314 (811)
..++.++.+|+.+|+|++|+|+.+||+.++.... ..++ ++.++.+++.+|.|++|.|+|+||..+|.
T Consensus 81 ~~~~~~~~~F~~~D~~~~g~i~~~e~~~~l~~~~--~~~~------~~~~~~~~~~~d~~~~g~i~~~ef~~~~~ 147 (149)
T PTZ00184 81 DSEEEIKEAFKVFDRDGNGFISAAELRHVMTNLG--EKLT------DEEVDEMIREADVDGDGQINYEEFVKMMM 147 (149)
T ss_pred cHHHHHHHHHHhhCCCCCCeEeHHHHHHHHHHHC--CCCC------HHHHHHHHHhcCCCCCCcCcHHHHHHHHh
Confidence 5677899999999999999999999999996431 1222 23455688999999999999999999875
No 75
>PTZ00306 NADH-dependent fumarate reductase; Provisional
Probab=99.57 E-value=5.2e-14 Score=177.91 Aligned_cols=175 Identities=18% Similarity=0.204 Sum_probs=126.8
Q ss_pred cccceEEEEEE---EecCCEEEEEEEcCCC---cccCCCcEEEEEeccCCCCeeecCcccCCCCC-CeEEEEEEEc-CCc
Q 003558 599 SIKAVSIQKVA---VYPGNVLALHMSKPDR---FRYKSGQYMFVNCAAVSPFEWHPFSITSAPDD-DYLSVHIRTL-GDW 670 (811)
Q Consensus 599 ~~~~~~i~~v~---~~~~~v~~l~l~~p~~---~~~~pGQyv~l~~p~~s~~e~HPFSIas~p~~-~~l~~~Ik~~-g~~ 670 (811)
.|.+++|.+++ .+++++..++|..|.. +.|+|||||.|+++..+.-..|+||++|.|++ +.+.|+||.. |..
T Consensus 913 ~w~~~~l~~~~~~~~~~~~~~~~~f~lp~~~~~~~~~pGQfv~l~~~~~g~~~~R~YS~~S~p~~~~~i~l~Vr~~~G~~ 992 (1167)
T PTZ00306 913 KWTTVVVREVREGGQFGTGSRVLRFNLPGALQRSGLTLGQFIAIRGDWDGQQLIGYYSPITLPDDLGVISILARGDKGTL 992 (1167)
T ss_pred ceEEEEEEEEeccccccCCeEEEEEECCCcccccCCCCCeEEEEEeeeCCeEEEEEeccCCCCCCCCeEEEEEEcCCChh
Confidence 46778888886 4578988899988753 46999999999987544345799999999954 6799999874 667
Q ss_pred cHhHHHHhhhccCCCCCCCcccccccCCCCCCCCEEEEEcccCCC----------CCCCCCCCeEEEEEeCcCHHHHHHH
Q 003558 671 TRQLRTVFSEVCRPPPNGISGLLRAEGHNNPDFPRVLIDGPYGAP----------AQDYKEYEVVLLVGLGIGATPMISI 740 (811)
Q Consensus 671 T~~L~~~~~~~~~~~~~G~sg~~~~~~~~~~~~~~v~idGPyG~~----------~~~~~~~~~vllIagGiGITP~lsi 740 (811)
|..|.+ + ++| +.|.|.||+|.+ ..+....+++||||||+||||++||
T Consensus 993 S~~L~~-l-------~~G---------------d~v~v~gp~G~~~~~~p~~~~f~~~~~~~~~ivlIAGGtGItP~~sm 1049 (1167)
T PTZ00306 993 KEWISA-L-------RPG---------------DSVEMKACGGLRIERRPADKQFVFRGHVIRKLALIAGGTGVAPMLQI 1049 (1167)
T ss_pred HHHHhh-C-------CCC---------------CEEEEeCCcCccccccCccceeeeccCCCceEEEEECCccHhHHHHH
Confidence 777742 2 344 899999998842 1122345789999999999999999
Q ss_pred HHHHHHhcc--------------cchhh-HHHHHHHhhhcCCC-e-EEEEEcCCCCCCCcccCccccCCHHHHHHh
Q 003558 741 VKDIVNNMK--------------AIEEE-EENDLENGRDTGVN-T-TIIIIDNNYEPFFFWTQKKGPIQDKKSILL 799 (811)
Q Consensus 741 l~~l~~~~~--------------~~~~~-~~~el~~~~~~~~~-~-~i~v~~~~~~~~~~w~g~~G~i~~~~~~~~ 799 (811)
+++++++.. +.+++ +.+++.++..+..+ + .+++++++++. |.+..|+|++...+.+
T Consensus 1050 l~~~l~~~~~~~~~~i~Llyg~r~~~dl~~~~eL~~l~~~~~~~f~~~~~ls~~~~~---w~~~~G~i~~~~l~~~ 1122 (1167)
T PTZ00306 1050 IRAALKKPYVDSIESIRLIYAAEDVSELTYRELLESYRKENPGKFKCHFVLNNPPEG---WTDGVGFVDRALLQSA 1122 (1167)
T ss_pred HHHHHhCcccCCCceEEEEEEeCCHHHhhHHHHHHHHHHHCCCCEEEEEEECCCCcc---cCCCCCCCCHHHHHHh
Confidence 999987531 12233 34555555555553 3 44566666666 9999999998755443
No 76
>KOG0028 consensus Ca2+-binding protein (centrin/caltractin), EF-Hand superfamily protein [Cytoskeleton; Cell cycle control, cell division, chromosome partitioning]
Probab=99.54 E-value=5.8e-14 Score=132.85 Aligned_cols=140 Identities=14% Similarity=0.304 Sum_probs=110.8
Q ss_pred CcccHHHHHHHHHhHccCCCCceehhhhcccc---cCCCCCHHHHHHHHHHHHccCCCCCCceeHHHHHHHHH-HhccCC
Q 003558 165 GGAGWANVEKRFDEITASTNGVLPRARFGECI---GMNKDSKDFAVELFDALTRRRNIQGDTITKDQLREFWD-QISDQS 240 (811)
Q Consensus 165 ~~~~~~~l~~~F~~lD~d~dG~Is~~ef~~~l---g~~~~~~~~~~~lf~~l~d~d~~~~G~I~~~EF~~~~~-~l~~~~ 240 (811)
..++-++++..|+.+|.|++|+|+.+||..++ |..+ .++.+.++..- .|+++ .|.|+|++|+..+. .++...
T Consensus 28 ~~~q~q~i~e~f~lfd~~~~g~iD~~EL~vAmralGFE~-~k~ei~kll~d-~dk~~--~g~i~fe~f~~~mt~k~~e~d 103 (172)
T KOG0028|consen 28 TEEQKQEIKEAFELFDPDMAGKIDVEELKVAMRALGFEP-KKEEILKLLAD-VDKEG--SGKITFEDFRRVMTVKLGERD 103 (172)
T ss_pred cHHHHhhHHHHHHhhccCCCCcccHHHHHHHHHHcCCCc-chHHHHHHHHh-hhhcc--CceechHHHHHHHHHHHhccC
Confidence 34455889999999999999999999996554 6655 55555555442 34444 89999999999965 567777
Q ss_pred hHHHHHHHhhhhcCCCCCceeHHHHHHHHHhhhccCCCcchHHHHHHHHHHHHHHcCCCCCCcccHHHHHHHHHhC
Q 003558 241 FDSRLQTFFDMVDKDADGRITEDEVREIISLSASANKLSNIQKQAEEYAALIMEELDPDHLGCIMIDNLEMLLLQA 316 (811)
Q Consensus 241 ~~e~l~~~F~~fDkD~dG~It~eE~~~il~~~~~~~~l~~~~~~~~e~~~~i~~e~D~d~dG~Is~eEF~~~l~~~ 316 (811)
+.++++.+|+.+|.|++|.|+..+|+.+...... .+. ++.+..+++|+|.|+||.|+-+||..+|++.
T Consensus 104 t~eEi~~afrl~D~D~~Gkis~~~lkrvakeLge--nlt------D~El~eMIeEAd~d~dgevneeEF~~imk~t 171 (172)
T KOG0028|consen 104 TKEEIKKAFRLFDDDKTGKISQRNLKRVAKELGE--NLT------DEELMEMIEEADRDGDGEVNEEEFIRIMKKT 171 (172)
T ss_pred cHHHHHHHHHcccccCCCCcCHHHHHHHHHHhCc--ccc------HHHHHHHHHHhcccccccccHHHHHHHHhcC
Confidence 9999999999999999999999999999863322 122 3445559999999999999999999999864
No 77
>cd06193 siderophore_interacting Siderophore interacting proteins share the domain structure of the ferredoxin reductase like family. Siderophores are produced in various bacteria (and some plants) to extract iron from hosts. Binding constants are high, so iron can be pilfered from transferrin and lactoferrin for bacterial uptake, contributing to pathogen virulence. Ferredoxin reductase (FNR), an FAD and NAD(P) binding protein, was intially identified as a chloroplast reductase activity, catalyzing the electron transfer from reduced iron-sulfur protein ferredoxin to NADP+ as the final step in the electron transport mechanism of photosystem I. FNR transfers electrons from reduced ferredoxin to FAD (forming FADH2 via a semiquinone intermediate) and then transfers a hydride ion to convert NADP+ to NADPH. FNR has since been shown to utilize a variety of electron acceptors and donors and has a variety of physiological functions including nitrogen assimilation, dinitrogen fixation, steroid hy
Probab=99.54 E-value=4.8e-14 Score=148.15 Aligned_cols=119 Identities=13% Similarity=0.154 Sum_probs=97.1
Q ss_pred EEEEEEecCCEEEEEEEcCCC---cccCCCcEEEEEeccCC-------------------CCeeecCcccCCC-CCCeEE
Q 003558 605 IQKVAVYPGNVLALHMSKPDR---FRYKSGQYMFVNCAAVS-------------------PFEWHPFSITSAP-DDDYLS 661 (811)
Q Consensus 605 i~~v~~~~~~v~~l~l~~p~~---~~~~pGQyv~l~~p~~s-------------------~~e~HPFSIas~p-~~~~l~ 661 (811)
|++++.+++++++|+|+.|.. ..|+||||+.|.++..+ ...+|+|||++.| ++++++
T Consensus 1 V~~~~~~s~~~~~l~l~~~~~~~~~~~~pGQ~v~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~R~YSi~~~~~~~~~l~ 80 (235)
T cd06193 1 VVRVERLTPHMRRITLGGPDLAGFPSDGPDQHVKLLFPDPGQAPPVLPVLGRRRWPPEEPRPVMRTYTVRRFDPEAGELD 80 (235)
T ss_pred CceeEecCCCEEEEEEecCccccCCCCCCCceEEEEecCCCCCCCCCccccccccCCcccCCcCcccceeEEcCCCCEEE
Confidence 457788999999999998764 57899999999998643 4678999999986 578999
Q ss_pred EEEEEc---CCccHhHHHHhhhccCCCCCCCcccccccCCCCCCCCEEEEEcccCCCCCCCCCCCeEEEEEeCcCHHHHH
Q 003558 662 VHIRTL---GDWTRQLRTVFSEVCRPPPNGISGLLRAEGHNNPDFPRVLIDGPYGAPAQDYKEYEVVLLVGLGIGATPMI 738 (811)
Q Consensus 662 ~~Ik~~---g~~T~~L~~~~~~~~~~~~~G~sg~~~~~~~~~~~~~~v~idGPyG~~~~~~~~~~~vllIagGiGITP~l 738 (811)
|.|+.. |..|+.+.+ + ++| +.|.|.||+|.+... ...+++||||||+||||++
T Consensus 81 ~~v~~~~~~G~~s~~l~~-l-------~~G---------------d~v~v~gP~G~~~~~-~~~~~~vlia~GtGi~p~~ 136 (235)
T cd06193 81 IDFVLHGDEGPASRWAAS-A-------QPG---------------DTLGIAGPGGSFLPP-PDADWYLLAGDETALPAIA 136 (235)
T ss_pred EEEEeCCCCCchHHHHhh-C-------CCC---------------CEEEEECCCCCCCCC-CCcceEEEEeccchHHHHH
Confidence 999887 445666642 2 344 899999999998763 3567899999999999999
Q ss_pred HHHHHHHHh
Q 003558 739 SIVKDIVNN 747 (811)
Q Consensus 739 sil~~l~~~ 747 (811)
+|++++.+.
T Consensus 137 ~il~~~~~~ 145 (235)
T cd06193 137 AILEELPAD 145 (235)
T ss_pred HHHHhCCCC
Confidence 999988754
No 78
>COG5126 FRQ1 Ca2+-binding protein (EF-Hand superfamily) [Signal transduction mechanisms / Cytoskeleton / Cell division and chromosome partitioning / General function prediction only]
Probab=99.40 E-value=1.8e-12 Score=125.68 Aligned_cols=127 Identities=20% Similarity=0.291 Sum_probs=114.2
Q ss_pred CCCccccCchhHHHHHhhhhhhhccCCcccHHHHHHHHHhHccCCCCceehhhhcccccC----CCCCHHHHHHHHHHHH
Q 003558 139 PPARFDRNKSAAAYALKGLKFISKTDGGAGWANVEKRFDEITASTNGVLPRARFGECIGM----NKDSKDFAVELFDALT 214 (811)
Q Consensus 139 ~~~~~dr~~s~a~~alk~l~~i~~~~~~~~~~~l~~~F~~lD~d~dG~Is~~ef~~~lg~----~~~~~~~~~~lf~~l~ 214 (811)
+|++||++++|.+..-+...++...+....-.++.++|..+|. ++|.|++.+|..+|+. .+ ..+.++..|+ ++
T Consensus 25 aF~l~D~d~~G~I~~~el~~ilr~lg~~~s~~ei~~l~~~~d~-~~~~idf~~Fl~~ms~~~~~~~-~~Eel~~aF~-~f 101 (160)
T COG5126 25 AFQLFDRDSDGLIDRNELGKILRSLGFNPSEAEINKLFEEIDA-GNETVDFPEFLTVMSVKLKRGD-KEEELREAFK-LF 101 (160)
T ss_pred HHHHhCcCCCCCCcHHHHHHHHHHcCCCCcHHHHHHHHHhccC-CCCccCHHHHHHHHHHHhccCC-cHHHHHHHHH-Hh
Confidence 3489999999999998888888877777777889999999998 8999999999999853 33 5788899999 58
Q ss_pred ccCCCCCCceeHHHHHHHHHHhccCChHHHHHHHhhhhcCCCCCceeHHHHHHHHH
Q 003558 215 RRRNIQGDTITKDQLREFWDQISDQSFDSRLQTFFDMVDKDADGRITEDEVREIIS 270 (811)
Q Consensus 215 d~d~~~~G~I~~~EF~~~~~~l~~~~~~e~l~~~F~~fDkD~dG~It~eE~~~il~ 270 (811)
|.|+ +|+|+.+|+..++..++...++++++.+++.+|+|+||+|+++||.+.+.
T Consensus 102 D~d~--dG~Is~~eL~~vl~~lge~~~deev~~ll~~~d~d~dG~i~~~eF~~~~~ 155 (160)
T COG5126 102 DKDH--DGYISIGELRRVLKSLGERLSDEEVEKLLKEYDEDGDGEIDYEEFKKLIK 155 (160)
T ss_pred CCCC--CceecHHHHHHHHHhhcccCCHHHHHHHHHhcCCCCCceEeHHHHHHHHh
Confidence 8888 99999999999999999999999999999999999999999999999875
No 79
>KOG0038 consensus Ca2+-binding kinase interacting protein (KIP) (EF-Hand protein superfamily) [General function prediction only]
Probab=99.40 E-value=2.8e-12 Score=119.03 Aligned_cols=146 Identities=18% Similarity=0.279 Sum_probs=119.0
Q ss_pred ccHHHHHHHHHhHccCC-----------CCceehhhhcccccCCCCCHHHHHHHHHHHHccCCCCCCceeHHHHHHHHHH
Q 003558 167 AGWANVEKRFDEITAST-----------NGVLPRARFGECIGMNKDSKDFAVELFDALTRRRNIQGDTITKDQLREFWDQ 235 (811)
Q Consensus 167 ~~~~~l~~~F~~lD~d~-----------dG~Is~~ef~~~lg~~~~~~~~~~~lf~~l~d~d~~~~G~I~~~EF~~~~~~ 235 (811)
.++-++.++|..+.++- +-+++.+...++-.+++ +.+-+++.++ +..|| .|.++|++|+++++.
T Consensus 25 KdIlrl~~Rf~~L~P~lVP~~~~~~~~~~v~vp~e~i~kMPELke--npfk~ri~e~-FSeDG--~GnlsfddFlDmfSV 99 (189)
T KOG0038|consen 25 KDILRLHKRFYELAPHLVPTDMTGNRPPIVKVPFELIEKMPELKE--NPFKRRICEV-FSEDG--RGNLSFDDFLDMFSV 99 (189)
T ss_pred HHHHHHHHHHHHhCcccccccccCCCCCceeecHHHHhhChhhhc--ChHHHHHHHH-hccCC--CCcccHHHHHHHHHH
Confidence 45677899999987521 22466666666666664 4567888886 56677 999999999999999
Q ss_pred hccCCh-HHHHHHHhhhhcCCCCCceeHHHHHHHHHhhhccCCCcchHHHHHHHHHHHHHHcCCCCCCcccHHHHHHHHH
Q 003558 236 ISDQSF-DSRLQTFFDMVDKDADGRITEDEVREIISLSASANKLSNIQKQAEEYAALIMEELDPDHLGCIMIDNLEMLLL 314 (811)
Q Consensus 236 l~~~~~-~e~l~~~F~~fDkD~dG~It~eE~~~il~~~~~~~~l~~~~~~~~e~~~~i~~e~D~d~dG~Is~eEF~~~l~ 314 (811)
+++..+ +-++..+|++||-|+|++|..+++...+..... +.++ .++++-+++.+++|+|.|+||++++.||+.|+.
T Consensus 100 ~sE~APrdlK~~YAFkIYDfd~D~~i~~~DL~~~l~~lTr-~eLs--~eEv~~i~ekvieEAD~DgDgkl~~~eFe~~i~ 176 (189)
T KOG0038|consen 100 FSEMAPRDLKAKYAFKIYDFDGDEFIGHDDLEKTLTSLTR-DELS--DEEVELICEKVIEEADLDGDGKLSFAEFEHVIL 176 (189)
T ss_pred HHhhChHHhhhhheeEEeecCCCCcccHHHHHHHHHHHhh-ccCC--HHHHHHHHHHHHHHhcCCCCCcccHHHHHHHHH
Confidence 988766 458999999999999999999999999974433 3455 677888999999999999999999999999999
Q ss_pred hCCccc
Q 003558 315 QAPAQS 320 (811)
Q Consensus 315 ~~p~~~ 320 (811)
+.|+.+
T Consensus 177 raPDFl 182 (189)
T KOG0038|consen 177 RAPDFL 182 (189)
T ss_pred hCcchH
Confidence 999975
No 80
>PF01794 Ferric_reduct: Ferric reductase like transmembrane component; InterPro: IPR013130 This family includes a common region in the transmembrane proteins mammalian cytochrome b-245 heavy chain (gp91-phox), ferric reductase transmembrane component in yeast and respiratory burst oxidase from Arabidopsis thaliana. This may be a family of flavocytochromes capable of moving electrons across the plasma membrane [] that include a potential FAD binding domain. Mutations in the sequence of cytochrome b-245 heavy chain (gp91-phox) lead to the X-linked chronic granulomatous disease. The bacteriocidal ability of phagocytic cells is reduced and is characterised by the absence of a functional plasma membrane associated NADPH oxidase [].; GO: 0005506 iron ion binding, 0009055 electron carrier activity, 0016491 oxidoreductase activity, 0050660 flavin adenine dinucleotide binding, 0016021 integral to membrane
Probab=99.39 E-value=9.1e-13 Score=124.12 Aligned_cols=118 Identities=25% Similarity=0.398 Sum_probs=87.4
Q ss_pred hhHHHHHHHHhhhhh-hhhcccccccCccccCcchhhHHHHHHHHHHHHHHHHHHhhhccccceeeecCcCccCCCCccc
Q 003558 409 KFNMALILLPVCRNT-ITWLRNKTKLSGVVPFDDNLNFHKVIAVGISIGVGIHAISHLACDFPRLINASEEKYEPMEPYF 487 (811)
Q Consensus 409 ~~n~~lillp~~Rn~-i~~L~~~~~l~~~v~~d~~~~fHk~ig~~~~~~~~lH~i~~l~~~f~~~~~~~~~~~~~~~~~~ 487 (811)
..|+++++++++||. +.+++ ++|+|+.+.+|||+|+++++++++|++.|+...... ...
T Consensus 6 ~~~l~~~~~l~~R~~~l~~~~-------~~~~~~~~~~Hr~lg~~~~~~~~~H~~~~~~~~~~~------~~~------- 65 (125)
T PF01794_consen 6 FALLPLVFLLGLRNSPLARLT-------GISFDRLLRFHRWLGRLAFFLALLHGVLYLINWLRF------GGW------- 65 (125)
T ss_pred HHHHHHHHHHHHhhhHHHHHh-------CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH------hhh-------
Confidence 457788888889985 33332 578999999999999999999999999998422110 000
Q ss_pred CCCCcchhhhhhcchhHHHHHHHHHHHHHHHhcchhhhcccCCCCCccccccchhHHHHHHHHHHHHHHHH
Q 003558 488 GDQPKNYWHFVKSVEGVTGIVMVVLMAIAFTLATPWFRRNKLNLPKPLKKLTGFNAFWYSHHLFVIVYTLL 558 (811)
Q Consensus 488 ~~~~~~y~~~~~~~~~~tGiv~~v~~~i~~~~s~~~~Rr~~~~~~~p~~~~~~ye~F~~~H~l~~i~~vll 558 (811)
.....++.........+|+++++++.+++++|.+++||++ .||.|+++|++++++++++
T Consensus 66 -~~~~~~~~~~~~~~~~~G~~a~~~l~~l~~tS~~~~R~r~-----------~ye~f~~~H~~~~~~~~l~ 124 (125)
T PF01794_consen 66 -DWQEWFNAWLTGPYNLTGIIALLLLLILAVTSFPWIRRRR-----------NYEIFYYLHILFYIAFLLA 124 (125)
T ss_pred -chhHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHhC-----------cHHHHHHHHHHHHHHHHHH
Confidence 0011122334445577999999999999999999999542 7999999999998877653
No 81
>KOG0031 consensus Myosin regulatory light chain, EF-Hand protein superfamily [Cytoskeleton]
Probab=99.35 E-value=8.2e-12 Score=117.51 Aligned_cols=134 Identities=13% Similarity=0.278 Sum_probs=113.4
Q ss_pred cccHHHHHHHHHhHccCCCCceehhhhcccc---cCCCCCHHHHHHHHHHHHccCCCCCCceeHHHHHHHHH-HhccCCh
Q 003558 166 GAGWANVEKRFDEITASTNGVLPRARFGECI---GMNKDSKDFAVELFDALTRRRNIQGDTITKDQLREFWD-QISDQSF 241 (811)
Q Consensus 166 ~~~~~~l~~~F~~lD~d~dG~Is~~ef~~~l---g~~~~~~~~~~~lf~~l~d~d~~~~G~I~~~EF~~~~~-~l~~~~~ 241 (811)
+.+++|+++.|..+|.|+||.|++++++..+ |... +++++..++.. ..|.|+|.-|+.++- .++...+
T Consensus 28 q~QIqEfKEAF~~mDqnrDG~IdkeDL~d~~aSlGk~~-~d~elDaM~~E-------a~gPINft~FLTmfGekL~gtdp 99 (171)
T KOG0031|consen 28 QSQIQEFKEAFNLMDQNRDGFIDKEDLRDMLASLGKIA-SDEELDAMMKE-------APGPINFTVFLTMFGEKLNGTDP 99 (171)
T ss_pred HHHHHHHHHHHHHHhccCCCcccHHHHHHHHHHcCCCC-CHHHHHHHHHh-------CCCCeeHHHHHHHHHHHhcCCCH
Confidence 4578999999999999999999999999876 5555 77778877762 278999999999986 5677788
Q ss_pred HHHHHHHhhhhcCCCCCceeHHHHHHHHHhhhccCCCcchHHHHHHHHHHHHHHcCCCCCCcccHHHHHHHHHh
Q 003558 242 DSRLQTFFDMVDKDADGRITEDEVREIISLSASANKLSNIQKQAEEYAALIMEELDPDHLGCIMIDNLEMLLLQ 315 (811)
Q Consensus 242 ~e~l~~~F~~fDkD~dG~It~eE~~~il~~~~~~~~l~~~~~~~~e~~~~i~~e~D~d~dG~Is~eEF~~~l~~ 315 (811)
++-+..+|.+||.+++|.|..+.|+++|...+ .+.+ ++.++.+++..=+|..|.|+|.+|..+|..
T Consensus 100 e~~I~~AF~~FD~~~~G~I~~d~lre~Ltt~g--Dr~~------~eEV~~m~r~~p~d~~G~~dy~~~~~~ith 165 (171)
T KOG0031|consen 100 EEVILNAFKTFDDEGSGKIDEDYLRELLTTMG--DRFT------DEEVDEMYREAPIDKKGNFDYKAFTYIITH 165 (171)
T ss_pred HHHHHHHHHhcCccCCCccCHHHHHHHHHHhc--ccCC------HHHHHHHHHhCCcccCCceeHHHHHHHHHc
Confidence 99999999999999999999999999997432 2232 445666999999999999999999999984
No 82
>KOG0027 consensus Calmodulin and related proteins (EF-Hand superfamily) [Signal transduction mechanisms]
Probab=99.31 E-value=1.2e-11 Score=120.97 Aligned_cols=129 Identities=15% Similarity=0.204 Sum_probs=115.5
Q ss_pred CCCccccCchhHHHHHhhhhhhhccCCcccHHHHHHHHHhHccCCCCceehhhhcccccCCC---C----CHHHHHHHHH
Q 003558 139 PPARFDRNKSAAAYALKGLKFISKTDGGAGWANVEKRFDEITASTNGVLPRARFGECIGMNK---D----SKDFAVELFD 211 (811)
Q Consensus 139 ~~~~~dr~~s~a~~alk~l~~i~~~~~~~~~~~l~~~F~~lD~d~dG~Is~~ef~~~lg~~~---~----~~~~~~~lf~ 211 (811)
+|+.||.++.|.++..+...++...+....-+++..+++.+|.|+||.|+++||..++.... . +.+.+++.|+
T Consensus 13 ~F~~fD~d~~G~i~~~el~~~lr~lg~~~t~~el~~~~~~~D~dg~g~I~~~eF~~l~~~~~~~~~~~~~~~~el~eaF~ 92 (151)
T KOG0027|consen 13 AFQLFDKDGDGKISVEELGAVLRSLGQNPTEEELRDLIKEIDLDGDGTIDFEEFLDLMEKLGEEKTDEEASSEELKEAFR 92 (151)
T ss_pred HHHHHCCCCCCcccHHHHHHHHHHcCCCCCHHHHHHHHHHhCCCCCCeEcHHHHHHHHHhhhcccccccccHHHHHHHHH
Confidence 34789999999999999999999988888889999999999999999999999999984221 0 2347889999
Q ss_pred HHHccCCCCCCceeHHHHHHHHHHhccCChHHHHHHHhhhhcCCCCCceeHHHHHHHHH
Q 003558 212 ALTRRRNIQGDTITKDQLREFWDQISDQSFDSRLQTFFDMVDKDADGRITEDEVREIIS 270 (811)
Q Consensus 212 ~l~d~d~~~~G~I~~~EF~~~~~~l~~~~~~e~l~~~F~~fDkD~dG~It~eE~~~il~ 270 (811)
++|.++ +|.|+.+||..++..++....++++..+++.+|.|+||.|+++||.+++.
T Consensus 93 -~fD~d~--~G~Is~~el~~~l~~lg~~~~~~e~~~mi~~~d~d~dg~i~f~ef~~~m~ 148 (151)
T KOG0027|consen 93 -VFDKDG--DGFISASELKKVLTSLGEKLTDEECKEMIREVDVDGDGKVNFEEFVKMMS 148 (151)
T ss_pred -HHccCC--CCcCcHHHHHHHHHHhCCcCCHHHHHHHHHhcCCCCCCeEeHHHHHHHHh
Confidence 588888 99999999999999999999999999999999999999999999999885
No 83
>KOG0377 consensus Protein serine/threonine phosphatase RDGC/PPEF, contains STphosphatase and EF-hand domains [Signal transduction mechanisms]
Probab=99.30 E-value=1.1e-11 Score=133.28 Aligned_cols=163 Identities=20% Similarity=0.257 Sum_probs=122.7
Q ss_pred CCCCccccCchhHHHHHhhhhhhhccCCcccHHHHHHHHHhHccCCCCceehhhhcccc----cCCCCCHHHHHHHHHHH
Q 003558 138 QPPARFDRNKSAAAYALKGLKFISKTDGGAGWANVEKRFDEITASTNGVLPRARFGECI----GMNKDSKDFAVELFDAL 213 (811)
Q Consensus 138 ~~~~~~dr~~s~a~~alk~l~~i~~~~~~~~~~~l~~~F~~lD~d~dG~Is~~ef~~~l----g~~~~~~~~~~~lf~~l 213 (811)
..+|++++.+++|+++|++.-+-.+. ++++.|+.+|.++.|+|+..++..|+ |++- . .+.+-..+
T Consensus 439 tlrqR~~~vEeSAlk~Lrerl~s~~s-------dL~~eF~~~D~~ksG~lsis~Wa~~mE~i~~L~L-P---Wr~L~~kl 507 (631)
T KOG0377|consen 439 TLRQRMGIVEESALKELRERLRSHRS-------DLEDEFRKYDPKKSGKLSISHWAKCMENITGLNL-P---WRLLRPKL 507 (631)
T ss_pred hHHHHhhHHHHHHHHHHHHHHHhhhh-------HHHHHHHhcChhhcCeeeHHHHHHHHHHHhcCCC-c---HHHhhhhc
Confidence 34589999999999999985544443 49999999999999999999999998 4432 1 34444444
Q ss_pred HccCCCCCCceeHHHHHHHHHH--hccC----------ChHHHHHHHhhhhcCCCCCceeHHHHHHHHHhhhccCCCcch
Q 003558 214 TRRRNIQGDTITKDQLREFWDQ--ISDQ----------SFDSRLQTFFDMVDKDADGRITEDEVREIISLSASANKLSNI 281 (811)
Q Consensus 214 ~d~d~~~~G~I~~~EF~~~~~~--l~~~----------~~~e~l~~~F~~fDkD~dG~It~eE~~~il~~~~~~~~l~~~ 281 (811)
...+. +|.+.|.+-++.+.. +... .....|+.+|+.+|+|++|.||.+||+.++.+..+..+....
T Consensus 508 a~~s~--d~~v~Y~~~~~~l~~e~~~~ea~~slvetLYr~ks~LetiF~~iD~D~SG~isldEF~~a~~l~~sh~~~~i~ 585 (631)
T KOG0377|consen 508 ANGSD--DGKVEYKSTLDNLDTEVILEEAGSSLVETLYRNKSSLETIFNIIDADNSGEISLDEFRTAWKLLSSHMNGAIS 585 (631)
T ss_pred cCCCc--CcceehHhHHHHhhhhhHHHHHHhHHHHHHHhchhhHHHHHHHhccCCCCceeHHHHHHHHHHHHhhcCCCcC
Confidence 44333 789999887665531 1111 224568999999999999999999999999977776665554
Q ss_pred HHHHHHHHHHHHHHcCCCCCCcccHHHHHHHHHhCC
Q 003558 282 QKQAEEYAALIMEELDPDHLGCIMIDNLEMLLLQAP 317 (811)
Q Consensus 282 ~~~~~e~~~~i~~e~D~d~dG~Is~eEF~~~l~~~p 317 (811)
++++.+.+ +.+|.|+||.|+++||.+..+-.+
T Consensus 586 ~~~i~~la----~~mD~NkDG~IDlNEfLeAFrlvd 617 (631)
T KOG0377|consen 586 DDEILELA----RSMDLNKDGKIDLNEFLEAFRLVD 617 (631)
T ss_pred HHHHHHHH----HhhccCCCCcccHHHHHHHHhhhc
Confidence 56555544 458999999999999999887544
No 84
>PF00970 FAD_binding_6: Oxidoreductase FAD-binding domain; InterPro: IPR008333 These sequences contain an oxidoreductase FAD-binding domain. To date, the 3D-structures of the flavoprotein domain of Zea mays (Maize) nitrate reductase [] and of pig NADH:cytochrome b5 reductase [] have been solved. The overall fold is similar to that of ferredoxin:NADP+ reductase []: the FAD-binding domain (N-terminal) has the topology of an anti-parallel beta-barrel, while the NAD(P)-binding domain (C-terminal) has the topology of a classical pyridine dinucleotide-binding fold (i.e. a central parallel beta-sheet flanked by 2 helices on each side).; PDB: 1JB9_A 3LVB_A 3LO8_A 1FRN_A 1FND_A 1BX1_A 1FNC_A 1FNB_A 1BX0_A 1FRQ_A ....
Probab=99.21 E-value=3.8e-11 Score=108.64 Aligned_cols=91 Identities=29% Similarity=0.514 Sum_probs=74.5
Q ss_pred eEEEEEEEecCCEEEEEEEcCC---CcccCCCcEEEEEeccCCCCeeecCcccCCCCC-CeEEEEEEEc--CCccHhHHH
Q 003558 603 VSIQKVAVYPGNVLALHMSKPD---RFRYKSGQYMFVNCAAVSPFEWHPFSITSAPDD-DYLSVHIRTL--GDWTRQLRT 676 (811)
Q Consensus 603 ~~i~~v~~~~~~v~~l~l~~p~---~~~~~pGQyv~l~~p~~s~~e~HPFSIas~p~~-~~l~~~Ik~~--g~~T~~L~~ 676 (811)
++|++++.+++++..++|..|. .+.|.||||+.|+++..+...+|||||+|.|.+ +.++|+||.. |..|+.|.+
T Consensus 2 ~~v~~~~~~s~~~~~~~~~~~~~~~~~~~~pGQ~v~v~~~~~~~~~~R~yS~~s~~~~~~~~~~~ik~~~~G~~S~~L~~ 81 (99)
T PF00970_consen 2 AKVVEIEELSPDVKIFRFKLPDPDQKLDFKPGQFVSVRVPINGKQVSRPYSPASSPDDKGYLEFAIKRYPNGRVSRYLHQ 81 (99)
T ss_dssp EEEEEEEEESSSEEEEEEEESSTTTT-SSTTT-EEEEEEEETTEEEEEEEEBCSSTTSSSEEEEEEEECTTSHHHHHHHT
T ss_pred EEEEEEEEeCCCeEEEEEEECCCCcccccCcceEEEEEEccCCcceecceeEeeecCCCCcEEEEEEeccCCHHHHHHHh
Confidence 6789999999999999998774 356999999999999555568999999999964 5999999999 667887744
Q ss_pred HhhhccCCCCCCCcccccccCCCCCCCCEEEEEcccCCCC
Q 003558 677 VFSEVCRPPPNGISGLLRAEGHNNPDFPRVLIDGPYGAPA 716 (811)
Q Consensus 677 ~~~~~~~~~~~G~sg~~~~~~~~~~~~~~v~idGPyG~~~ 716 (811)
+ ++| +.|.|.||+|.+.
T Consensus 82 -l-------~~G---------------d~v~i~gP~G~f~ 98 (99)
T PF00970_consen 82 -L-------KPG---------------DEVEIRGPYGNFT 98 (99)
T ss_dssp -S-------CTT---------------SEEEEEEEESSEE
T ss_pred -C-------CCC---------------CEEEEEEcccccC
Confidence 3 334 8999999999874
No 85
>COG2871 NqrF Na+-transporting NADH:ubiquinone oxidoreductase, subunit NqrF [Energy production and conversion]
Probab=99.18 E-value=1.1e-10 Score=119.88 Aligned_cols=165 Identities=16% Similarity=0.250 Sum_probs=111.1
Q ss_pred EEEEEEEcCC--CcccCCCcEEEEEeccCC----C----------C---------------eeecCcccCCCCC-CeEEE
Q 003558 615 VLALHMSKPD--RFRYKSGQYMFVNCAAVS----P----------F---------------EWHPFSITSAPDD-DYLSV 662 (811)
Q Consensus 615 v~~l~l~~p~--~~~~~pGQyv~l~~p~~s----~----------~---------------e~HPFSIas~p~~-~~l~~ 662 (811)
+.+|++..|. ..+|+||.|+.|.+|.-. . | ..+.||++|.|++ +.+-|
T Consensus 149 IKEL~laip~g~~vpFraGGyiQie~pph~v~y~Dfdi~~eY~~DWdkf~lf~~vs~v~e~~~rAYSmAsYPeE~giI~~ 228 (410)
T COG2871 149 IKELKLAIPEGEEVPFRAGGYIQIEAPPHTVNYKDFDIPPEYHEDWDKFNLFRYVSKVDEPIIRAYSMASYPEEKGIIKL 228 (410)
T ss_pred hhhheeeCCCCCccccCCCceEEEecCCccccccccCCChhHhcchhhhchheeeccccHHHHHHhhhhcChhhcCeEEE
Confidence 5567777765 578999999999998531 0 1 1367999999964 67788
Q ss_pred EEEEcCC-cc--HhHHHHhhhccCCCCCCCcccccccCCCCCCCCEEEEEcccCCCCCCCCCCCeEEEEEeCcCHHHHHH
Q 003558 663 HIRTLGD-WT--RQLRTVFSEVCRPPPNGISGLLRAEGHNNPDFPRVLIDGPYGAPAQDYKEYEVVLLVGLGIGATPMIS 739 (811)
Q Consensus 663 ~Ik~~g~-~T--~~L~~~~~~~~~~~~~G~sg~~~~~~~~~~~~~~v~idGPyG~~~~~~~~~~~vllIagGiGITP~ls 739 (811)
-||..-. .. ..-....+...-++++ +++|.|.||||.+.. -.....+|+|+||.|.+|+.|
T Consensus 229 NvRIAtPPp~~~~~PpG~mSSyi~sLKp---------------GDKvtisGPfGEfFa-KdtdaemvFigGGAGmapmRS 292 (410)
T COG2871 229 NVRIATPPPRNPDAPPGQMSSYIWSLKP---------------GDKVTISGPFGEFFA-KDTDAEMVFIGGGAGMAPMRS 292 (410)
T ss_pred EEEeccCCCCCCCCCccceeeeEEeecC---------------CCeEEEeccchhhhh-ccCCCceEEEecCcCcCchHH
Confidence 8886521 10 0011222222223344 499999999999874 234567999999999999999
Q ss_pred HHHHHHHhcccch------------hhHHHHH-HHhhhcCCCeEEE-EEcCC-CCCCCcccCccccCCHHHHH
Q 003558 740 IVKDIVNNMKAIE------------EEEENDL-ENGRDTGVNTTII-IIDNN-YEPFFFWTQKKGPIQDKKSI 797 (811)
Q Consensus 740 il~~l~~~~~~~~------------~~~~~el-~~~~~~~~~~~i~-v~~~~-~~~~~~w~g~~G~i~~~~~~ 797 (811)
.+-+++.+.+..+ +.+|.|. ..+.++.+|...| +++++ +++ +|+|.+|+|...+.+
T Consensus 293 HIfDqL~rlhSkRkis~WYGARS~rE~fY~Ed~d~L~ae~pNF~wH~aLSdplpED--nW~g~TgFihnv~~e 363 (410)
T COG2871 293 HIFDQLKRLHSKRKISFWYGARSLREMFYQEDFDQLQAENPNFHWHLALSDPLPED--NWDGYTGFIHNVLYE 363 (410)
T ss_pred HHHHHHHhhcccceeeeeeccchHHHhHHHHHHHHHHhhCCCcEEEEEecCCCCcC--CcccchhHHHHHHHh
Confidence 9999888754433 2355444 4566678885554 45554 233 599999999887655
No 86
>KOG0028 consensus Ca2+-binding protein (centrin/caltractin), EF-Hand superfamily protein [Cytoskeleton; Cell cycle control, cell division, chromosome partitioning]
Probab=99.17 E-value=7.1e-11 Score=112.14 Aligned_cols=129 Identities=16% Similarity=0.233 Sum_probs=118.5
Q ss_pred CCCCccccCchhHHHHHhhhhhhhccCCcccHHHHHHHHHhHccCCCCceehhhhcccc----cCCCCCHHHHHHHHHHH
Q 003558 138 QPPARFDRNKSAAAYALKGLKFISKTDGGAGWANVEKRFDEITASTNGVLPRARFGECI----GMNKDSKDFAVELFDAL 213 (811)
Q Consensus 138 ~~~~~~dr~~s~a~~alk~l~~i~~~~~~~~~~~l~~~F~~lD~d~dG~Is~~ef~~~l----g~~~~~~~~~~~lf~~l 213 (811)
++|+.||.++++++++-+....+...+.+..-+++.++...+|.++.|.|++++|...+ +..+ +.+.+...|+ +
T Consensus 37 e~f~lfd~~~~g~iD~~EL~vAmralGFE~~k~ei~kll~d~dk~~~g~i~fe~f~~~mt~k~~e~d-t~eEi~~afr-l 114 (172)
T KOG0028|consen 37 EAFELFDPDMAGKIDVEELKVAMRALGFEPKKEEILKLLADVDKEGSGKITFEDFRRVMTVKLGERD-TKEEIKKAFR-L 114 (172)
T ss_pred HHHHhhccCCCCcccHHHHHHHHHHcCCCcchHHHHHHHHhhhhccCceechHHHHHHHHHHHhccC-cHHHHHHHHH-c
Confidence 45688999999999999988888888988888999999999999999999999999875 5666 8899999999 5
Q ss_pred HccCCCCCCceeHHHHHHHHHHhccCChHHHHHHHhhhhcCCCCCceeHHHHHHHHH
Q 003558 214 TRRRNIQGDTITKDQLREFWDQISDQSFDSRLQTFFDMVDKDADGRITEDEVREIIS 270 (811)
Q Consensus 214 ~d~d~~~~G~I~~~EF~~~~~~l~~~~~~e~l~~~F~~fDkD~dG~It~eE~~~il~ 270 (811)
.|.|+ +|.|++.+|..++..++.+..+++++.+.+-+|.|+||-|+.+||-.+++
T Consensus 115 ~D~D~--~Gkis~~~lkrvakeLgenltD~El~eMIeEAd~d~dgevneeEF~~imk 169 (172)
T KOG0028|consen 115 FDDDK--TGKISQRNLKRVAKELGENLTDEELMEMIEEADRDGDGEVNEEEFIRIMK 169 (172)
T ss_pred ccccC--CCCcCHHHHHHHHHHhCccccHHHHHHHHHHhcccccccccHHHHHHHHh
Confidence 77777 99999999999999999999999999999999999999999999999885
No 87
>KOG0030 consensus Myosin essential light chain, EF-Hand protein superfamily [Cytoskeleton]
Probab=99.16 E-value=2.6e-10 Score=105.79 Aligned_cols=137 Identities=16% Similarity=0.375 Sum_probs=104.2
Q ss_pred ccHHHHHHHHHhHccCCCCceehhhhcccc---cCCCCCHHHHHHHHHHHHccCCCCCCceeHHHHHHHHHHhccC---C
Q 003558 167 AGWANVEKRFDEITASTNGVLPRARFGECI---GMNKDSKDFAVELFDALTRRRNIQGDTITKDQLREFWDQISDQ---S 240 (811)
Q Consensus 167 ~~~~~l~~~F~~lD~d~dG~Is~~ef~~~l---g~~~~~~~~~~~lf~~l~d~d~~~~G~I~~~EF~~~~~~l~~~---~ 240 (811)
+..++++++|..+|..+||+|+..+...|+ |.++ ++.++.+.... .+++..+...|+|++|+.++.++.++ .
T Consensus 8 d~~~e~ke~F~lfD~~gD~ki~~~q~gdvlRalG~nP-T~aeV~k~l~~-~~~~~~~~~rl~FE~fLpm~q~vaknk~q~ 85 (152)
T KOG0030|consen 8 DQMEEFKEAFLLFDRTGDGKISGSQVGDVLRALGQNP-TNAEVLKVLGQ-PKRREMNVKRLDFEEFLPMYQQVAKNKDQG 85 (152)
T ss_pred chHHHHHHHHHHHhccCcccccHHHHHHHHHHhcCCC-cHHHHHHHHcC-cccchhhhhhhhHHHHHHHHHHHHhccccC
Confidence 455889999999999999999999998876 8888 77766665543 22231124789999999999999765 3
Q ss_pred hHHHHHHHhhhhcCCCCCceeHHHHHHHHHhhhccCCCcchHHHHHHHHHHHHHHcCCCCCCcccHHHHHHHHH
Q 003558 241 FDSRLQTFFDMVDKDADGRITEDEVREIISLSASANKLSNIQKQAEEYAALIMEELDPDHLGCIMIDNLEMLLL 314 (811)
Q Consensus 241 ~~e~l~~~F~~fDkD~dG~It~eE~~~il~~~~~~~~l~~~~~~~~e~~~~i~~e~D~d~dG~Is~eEF~~~l~ 314 (811)
..+..-.-.+.||++++|.|...||+++|.... ++++ ++++++ ++.. -.|++|.|+|++|.+.+.
T Consensus 86 t~edfvegLrvFDkeg~G~i~~aeLRhvLttlG--ekl~--eeEVe~----Llag-~eD~nG~i~YE~fVk~i~ 150 (152)
T KOG0030|consen 86 TYEDFVEGLRVFDKEGNGTIMGAELRHVLTTLG--EKLT--EEEVEE----LLAG-QEDSNGCINYEAFVKHIM 150 (152)
T ss_pred cHHHHHHHHHhhcccCCcceeHHHHHHHHHHHH--hhcc--HHHHHH----HHcc-ccccCCcCcHHHHHHHHh
Confidence 456666678999999999999999999997443 4444 344444 4443 347899999999998764
No 88
>KOG0037 consensus Ca2+-binding protein, EF-Hand protein superfamily [Signal transduction mechanisms]
Probab=99.15 E-value=4.6e-10 Score=112.30 Aligned_cols=131 Identities=18% Similarity=0.308 Sum_probs=105.0
Q ss_pred HHHHHHHHhHccCCCCceehhhhcccccC---CCCCHHHHHHHHHHHHccCCCCCCceeHHHHHHHHHHhccCChHHHHH
Q 003558 170 ANVEKRFDEITASTNGVLPRARFGECIGM---NKDSKDFAVELFDALTRRRNIQGDTITKDQLREFWDQISDQSFDSRLQ 246 (811)
Q Consensus 170 ~~l~~~F~~lD~d~dG~Is~~ef~~~lg~---~~~~~~~~~~lf~~l~d~d~~~~G~I~~~EF~~~~~~l~~~~~~e~l~ 246 (811)
.++...|...|.|..|.|+-+|+..++.. ...+.+.++.|.. ++|.+. +|+|+++||.+.|..+. ..+
T Consensus 57 ~~~~~~f~~vD~d~sg~i~~~eLq~aLsn~~~~~Fs~~TcrlmI~-mfd~~~--~G~i~f~EF~~Lw~~i~------~Wr 127 (221)
T KOG0037|consen 57 PQLAGWFQSVDRDRSGRILAKELQQALSNGTWSPFSIETCRLMIS-MFDRDN--SGTIGFKEFKALWKYIN------QWR 127 (221)
T ss_pred HHHHHHHHhhCccccccccHHHHHHHhhcCCCCCCCHHHHHHHHH-HhcCCC--CCccCHHHHHHHHHHHH------HHH
Confidence 56888999999999999999999998741 2225577887777 577776 89999999999998884 589
Q ss_pred HHhhhhcCCCCCceeHHHHHHHHHhhhccCCCcchHHHHHHHHHHHHHHcCCCCCCcccHHHHHHHHHhCC
Q 003558 247 TFFDMVDKDADGRITEDEVREIISLSASANKLSNIQKQAEEYAALIMEELDPDHLGCIMIDNLEMLLLQAP 317 (811)
Q Consensus 247 ~~F~~fDkD~dG~It~eE~~~il~~~~~~~~l~~~~~~~~e~~~~i~~e~D~d~dG~Is~eEF~~~l~~~p 317 (811)
.+|+-||+|++|.|+..||++++.... -.++ .+..+.|++..|....|.|.|++|.+.+..-+
T Consensus 128 ~vF~~~D~D~SG~I~~sEL~~Al~~~G--y~Ls------pq~~~~lv~kyd~~~~g~i~FD~FI~ccv~L~ 190 (221)
T KOG0037|consen 128 NVFRTYDRDRSGTIDSSELRQALTQLG--YRLS------PQFYNLLVRKYDRFGGGRIDFDDFIQCCVVLQ 190 (221)
T ss_pred HHHHhcccCCCCcccHHHHHHHHHHcC--cCCC------HHHHHHHHHHhccccCCceeHHHHHHHHHHHH
Confidence 999999999999999999999997332 2333 34556688889987799999999998776544
No 89
>PTZ00183 centrin; Provisional
Probab=99.13 E-value=3.6e-10 Score=110.52 Aligned_cols=127 Identities=15% Similarity=0.220 Sum_probs=108.1
Q ss_pred CCccccCchhHHHHHhhhhhhhccCCcccHHHHHHHHHhHccCCCCceehhhhccccc----CCCCCHHHHHHHHHHHHc
Q 003558 140 PARFDRNKSAAAYALKGLKFISKTDGGAGWANVEKRFDEITASTNGVLPRARFGECIG----MNKDSKDFAVELFDALTR 215 (811)
Q Consensus 140 ~~~~dr~~s~a~~alk~l~~i~~~~~~~~~~~l~~~F~~lD~d~dG~Is~~ef~~~lg----~~~~~~~~~~~lf~~l~d 215 (811)
|..+|++++|.++..+...++...+.......+..+|..+|.|++|.|+++||..++. ... .+..++.+|+. .|
T Consensus 23 F~~~D~~~~G~i~~~e~~~~l~~~g~~~~~~~~~~l~~~~d~~~~g~i~~~eF~~~~~~~~~~~~-~~~~l~~~F~~-~D 100 (158)
T PTZ00183 23 FDLFDTDGSGTIDPKELKVAMRSLGFEPKKEEIKQMIADVDKDGSGKIDFEEFLDIMTKKLGERD-PREEILKAFRL-FD 100 (158)
T ss_pred HHHhCCCCCCcccHHHHHHHHHHhCCCCCHHHHHHHHHHhCCCCCCcEeHHHHHHHHHHHhcCCC-cHHHHHHHHHH-hC
Confidence 3679999999999888877777655445567899999999999999999999988763 223 45678889995 67
Q ss_pred cCCCCCCceeHHHHHHHHHHhccCChHHHHHHHhhhhcCCCCCceeHHHHHHHHH
Q 003558 216 RRNIQGDTITKDQLREFWDQISDQSFDSRLQTFFDMVDKDADGRITEDEVREIIS 270 (811)
Q Consensus 216 ~d~~~~G~I~~~EF~~~~~~l~~~~~~e~l~~~F~~fDkD~dG~It~eE~~~il~ 270 (811)
.++ +|.|+.+||..++..++....++.++.+|..+|.|++|.|+++||.+++.
T Consensus 101 ~~~--~G~i~~~e~~~~l~~~~~~l~~~~~~~~~~~~d~~~~g~i~~~ef~~~~~ 153 (158)
T PTZ00183 101 DDK--TGKISLKNLKRVAKELGETITDEELQEMIDEADRNGDGEISEEEFYRIMK 153 (158)
T ss_pred CCC--CCcCcHHHHHHHHHHhCCCCCHHHHHHHHHHhCCCCCCcCcHHHHHHHHh
Confidence 777 99999999999999887778889999999999999999999999999885
No 90
>PRK06567 putative bifunctional glutamate synthase subunit beta/2-polyprenylphenol hydroxylase; Validated
Probab=99.12 E-value=4.4e-10 Score=135.67 Aligned_cols=118 Identities=17% Similarity=0.321 Sum_probs=93.9
Q ss_pred ceEEEEEEEecCCEEEEEEEcCCC-cccCCCcEEEEEeccCC--CC-eeecCcccCCC-CCCeEEEEEEEcCCccHhHHH
Q 003558 602 AVSIQKVAVYPGNVLALHMSKPDR-FRYKSGQYMFVNCAAVS--PF-EWHPFSITSAP-DDDYLSVHIRTLGDWTRQLRT 676 (811)
Q Consensus 602 ~~~i~~v~~~~~~v~~l~l~~p~~-~~~~pGQyv~l~~p~~s--~~-e~HPFSIas~p-~~~~l~~~Ik~~g~~T~~L~~ 676 (811)
..+|.+++.++++++.+++..|.. -.++||||+.|+++..+ .. +..||||++.+ +.+.++|.++..|..|+.|.+
T Consensus 792 ~~~Vv~~~~lap~i~~L~l~aP~iA~~~kPGQFVmL~~~~~g~~~l~~p~P~SI~~vD~e~g~It~i~rvVGkgT~~Ls~ 871 (1028)
T PRK06567 792 TSRVNKINILDDKTFELIIHSPLAAKNFKFGQFFRLQNYSEDAAKLIEPVALSPIDIDVEKGLISFIVFEVGKSTSLCKT 871 (1028)
T ss_pred ceEEEEEEEecCCEEEEEEeCcchhhcCCCCceEEEEeCCCCCccccCceeEEeeccCCCCCEEEEEEEEEChHHHHHhc
Confidence 467899999999999999998863 36899999999986432 22 45689999876 567899999999999998865
Q ss_pred HhhhccCCCCCCCcccccccCCCCCCCCEEEEEcccCCCCCCCCCCCeEEEEEeCcCHHHHHHHHHHHHH
Q 003558 677 VFSEVCRPPPNGISGLLRAEGHNNPDFPRVLIDGPYGAPAQDYKEYEVVLLVGLGIGATPMISIVKDIVN 746 (811)
Q Consensus 677 ~~~~~~~~~~~G~sg~~~~~~~~~~~~~~v~idGPyG~~~~~~~~~~~vllIagGiGITP~lsil~~l~~ 746 (811)
+ ++| +.+.|.||+|.++. ...++++|+||||+|++|+ ++.+.+
T Consensus 872 l--------~~G---------------d~v~v~GPLG~pF~-i~~~k~vLLVgGGVGiApL---ak~Lk~ 914 (1028)
T PRK06567 872 L--------SEN---------------EKVVLMGPTGSPLE-IPQNKKIVIVDFEVGNIGL---LKVLKE 914 (1028)
T ss_pred C--------CCC---------------CEEEEEcccCCCCC-CCCCCeEEEEEccccHHHH---HHHHHH
Confidence 3 334 77999999999874 3346789999999999974 455544
No 91
>PF13499 EF-hand_7: EF-hand domain pair; PDB: 1TCF_A 2TN4_A 1TN4_A 1A2X_A 2CT9_B 2OTG_B 2OS8_B 1SNL_A 3O4Y_A 3J04_E ....
Probab=99.11 E-value=2.5e-10 Score=95.23 Aligned_cols=66 Identities=29% Similarity=0.456 Sum_probs=56.8
Q ss_pred HHHHHhhhhcCCCCCceeHHHHHHHHHhhhccCCCcchHHHHHHHHHHHHHHcCCCCCCcccHHHHHHHH
Q 003558 244 RLQTFFDMVDKDADGRITEDEVREIISLSASANKLSNIQKQAEEYAALIMEELDPDHLGCIMIDNLEMLL 313 (811)
Q Consensus 244 ~l~~~F~~fDkD~dG~It~eE~~~il~~~~~~~~l~~~~~~~~e~~~~i~~e~D~d~dG~Is~eEF~~~l 313 (811)
+++.+|+.+|+|+||+|+.+||+.++....... .++++++.++.+|+.+|+|+||.|+++||..+|
T Consensus 1 ~l~~~F~~~D~d~~G~i~~~el~~~~~~~~~~~----~~~~~~~~~~~~~~~~D~d~dG~i~~~Ef~~~~ 66 (66)
T PF13499_consen 1 RLKEAFKKFDKDGDGYISKEELRRALKHLGRDM----SDEESDEMIDQIFREFDTDGDGRISFDEFLNFM 66 (66)
T ss_dssp HHHHHHHHHSTTSSSEEEHHHHHHHHHHTTSHS----THHHHHHHHHHHHHHHTTTSSSSEEHHHHHHHH
T ss_pred CHHHHHHHHcCCccCCCCHHHHHHHHHHhcccc----cHHHHHHHHHHHHHHhCCCCcCCCcHHHHhccC
Confidence 578999999999999999999999997443221 156678889999999999999999999999876
No 92
>cd06199 SiR Cytochrome p450- like alpha subunits of E. coli sulfite reductase (SiR) multimerize with beta subunits to catalyze the NADPH dependent reduction of sulfite to sulfide. Beta subunits have an Fe4S4 cluster and a siroheme, while the alpha subunits (cysJ gene) are of the cytochrome p450 (CyPor) family having FAD and FMN as prosthetic groups and utilizing NADPH. Cypor (including cyt -450 reductase, nitric oxide synthase, and methionine synthase reductase) are ferredoxin reductase (FNR)-like proteins with an additional N-terminal FMN domain and a connecting sub-domain inserted within the flavin binding portion of the FNR-like domain. The connecting domain orients the N-terminal FMN domain with the C-terminal FNR domain.
Probab=99.11 E-value=1.9e-10 Score=128.41 Aligned_cols=97 Identities=14% Similarity=0.141 Sum_probs=73.3
Q ss_pred CcccCCCcEEEEEeccCCCCeeecCcccCCCC--CCeEEEEEEEc----------CCccHhHHHHhhhccCCCCCCCccc
Q 003558 625 RFRYKSGQYMFVNCAAVSPFEWHPFSITSAPD--DDYLSVHIRTL----------GDWTRQLRTVFSEVCRPPPNGISGL 692 (811)
Q Consensus 625 ~~~~~pGQyv~l~~p~~s~~e~HPFSIas~p~--~~~l~~~Ik~~----------g~~T~~L~~~~~~~~~~~~~G~sg~ 692 (811)
..++.||||+.+..| . ..|+|||+|+|. ++.++++|+.. |-.|..|.+.. ++
T Consensus 129 ~~~~~~gq~l~l~~~-~---~~R~YSIaSsp~~~~~~i~l~v~~v~~~~~~~~~~G~~S~~L~~~~-------~~----- 192 (360)
T cd06199 129 PARLTAEELLDLLRP-L---QPRLYSIASSPKAVPDEVHLTVAVVRYESHGRERKGVASTFLADRL-------KE----- 192 (360)
T ss_pred CCCCCHHHHHHhCcC-C---CCcceeeccCcccCCCeEEEEEEEeeecCCCCccceehhHHHHhcC-------CC-----
Confidence 367889999998644 2 679999999995 47899999864 55566665432 12
Q ss_pred ccccCCCCCCCCEEEEEccc-CCCCCCCCCCCeEEEEEeCcCHHHHHHHHHHHHHh
Q 003558 693 LRAEGHNNPDFPRVLIDGPY-GAPAQDYKEYEVVLLVGLGIGATPMISIVKDIVNN 747 (811)
Q Consensus 693 ~~~~~~~~~~~~~v~idGPy-G~~~~~~~~~~~vllIagGiGITP~lsil~~l~~~ 747 (811)
+++|.|.+|. |.|..+.....++||||||+||||++|++++.+..
T Consensus 193 ----------Gd~v~v~~~~~~~F~lp~~~~~piImIa~GtGIAP~~s~l~~~~~~ 238 (360)
T cd06199 193 ----------GDTVPVFVQPNPHFRLPEDPDAPIIMVGPGTGIAPFRAFLQEREAT 238 (360)
T ss_pred ----------CCEEEEEEecCCCcCCCCCCCCCEEEEecCcChHHHHHHHHHHHhc
Confidence 3789998755 46765444467899999999999999999987653
No 93
>KOG0036 consensus Predicted mitochondrial carrier protein [Nucleotide transport and metabolism]
Probab=99.10 E-value=4.7e-10 Score=120.89 Aligned_cols=132 Identities=20% Similarity=0.328 Sum_probs=109.4
Q ss_pred HHHHHHHHhHccCCCCceehhhhcccc---cC-CCCCHHHHHHHHHHHHccCCCCCCceeHHHHHHHHHHhccCChHHHH
Q 003558 170 ANVEKRFDEITASTNGVLPRARFGECI---GM-NKDSKDFAVELFDALTRRRNIQGDTITKDQLREFWDQISDQSFDSRL 245 (811)
Q Consensus 170 ~~l~~~F~~lD~d~dG~Is~~ef~~~l---g~-~~~~~~~~~~lf~~l~d~d~~~~G~I~~~EF~~~~~~l~~~~~~e~l 245 (811)
.+++.+|+.+|.++||.++..++.+++ +. ++ ..+.+..+|.+ .|.+. +|.+||+||..++.. .+.++
T Consensus 14 ~r~~~lf~~lD~~~~g~~d~~~l~k~~~~l~~~~~-~~~~~~~l~~~-~d~~~--dg~vDy~eF~~Y~~~-----~E~~l 84 (463)
T KOG0036|consen 14 IRIRCLFKELDSKNDGQVDLDQLEKGLEKLDHPKP-NYEAAKMLFSA-MDANR--DGRVDYSEFKRYLDN-----KELEL 84 (463)
T ss_pred HHHHHHHHHhccCCCCceeHHHHHHHHHhcCCCCC-chHHHHHHHHh-cccCc--CCcccHHHHHHHHHH-----hHHHH
Confidence 678999999999999999999999665 32 24 55677888886 55555 999999999999843 46789
Q ss_pred HHHhhhhcCCCCCceeHHHHHHHHHhhhccCCCcchHHHHHHHHHHHHHHcCCCCCCcccHHHHHHHHHhCCc
Q 003558 246 QTFFDMVDKDADGRITEDEVREIISLSASANKLSNIQKQAEEYAALIMEELDPDHLGCIMIDNLEMLLLQAPA 318 (811)
Q Consensus 246 ~~~F~~fDkD~dG~It~eE~~~il~~~~~~~~l~~~~~~~~e~~~~i~~e~D~d~dG~Is~eEF~~~l~~~p~ 318 (811)
..+|+..|.|.||.|+.+|+.+.+.... .+++ ++.++.+++.+|+|+++.|+++||.+.++-+|+
T Consensus 85 ~~~F~~iD~~hdG~i~~~Ei~~~l~~~g--i~l~------de~~~k~~e~~d~~g~~~I~~~e~rd~~ll~p~ 149 (463)
T KOG0036|consen 85 YRIFQSIDLEHDGKIDPNEIWRYLKDLG--IQLS------DEKAAKFFEHMDKDGKATIDLEEWRDHLLLYPE 149 (463)
T ss_pred HHHHhhhccccCCccCHHHHHHHHHHhC--CccC------HHHHHHHHHHhccCCCeeeccHHHHhhhhcCCh
Confidence 9999999999999999999999987332 3333 345666999999999999999999999999984
No 94
>TIGR01931 cysJ sulfite reductase [NADPH] flavoprotein, alpha-component. This model describes an NADPH-dependent sulfite reductase flavoprotein subunit. Most members of this family are found in Cys biosynthesis gene clusters. The closest homologs below the trusted cutoff are designated as subunits nitrate reductase.
Probab=99.08 E-value=2.6e-10 Score=135.09 Aligned_cols=139 Identities=14% Similarity=0.150 Sum_probs=94.9
Q ss_pred cccCCCcEEEEEeccCCCCeeecCcccCCCC--CCeEEEEEEEc----------CCccHhHHHHhhhccCCCCCCCcccc
Q 003558 626 FRYKSGQYMFVNCAAVSPFEWHPFSITSAPD--DDYLSVHIRTL----------GDWTRQLRTVFSEVCRPPPNGISGLL 693 (811)
Q Consensus 626 ~~~~pGQyv~l~~p~~s~~e~HPFSIas~p~--~~~l~~~Ik~~----------g~~T~~L~~~~~~~~~~~~~G~sg~~ 693 (811)
+++.||||+.+..| .+.|||||+|+|. ++.++|+|+.+ |..|..|.+.+ ++|
T Consensus 367 ~~~~~gq~v~ll~~----~~~R~YSIaSsp~~~~~~l~ltV~~v~~~~~~~~~~G~~S~~L~~~l-------~~G----- 430 (597)
T TIGR01931 367 ADLDAEQLISLLRP----LTPRLYSISSSQSEVGDEVHLTVGVVRYQAHGRARLGGASGFLAERL-------KEG----- 430 (597)
T ss_pred CCCCHHHHHHhCcc----cCCceeeeccCcccCCCEEEEEEEEEEecCCCCccccchhHHHHhhC-------CCC-----
Confidence 57899999998865 3679999999984 57899999865 77787776643 233
Q ss_pred cccCCCCCCCCEEEEEcccC-CCCCCCCCCCeEEEEEeCcCHHHHHHHHHHHHHhc-----------cc-chhh-HHHHH
Q 003558 694 RAEGHNNPDFPRVLIDGPYG-APAQDYKEYEVVLLVGLGIGATPMISIVKDIVNNM-----------KA-IEEE-EENDL 759 (811)
Q Consensus 694 ~~~~~~~~~~~~v~idGPyG-~~~~~~~~~~~vllIagGiGITP~lsil~~l~~~~-----------~~-~~~~-~~~el 759 (811)
++|.|.||.| .|..+.....++||||||+|||||+|++++..... ++ ..+. +.+|+
T Consensus 431 ----------d~v~v~~~~~~~F~lp~~~~~piImIg~GTGIAPfrsflq~r~~~~~~g~~~LffG~R~~~~D~ly~~El 500 (597)
T TIGR01931 431 ----------DTVPVYIEPNDNFRLPEDPDTPIIMIGPGTGVAPFRAFMQERAEDGAKGKNWLFFGNPHFTTDFLYQVEW 500 (597)
T ss_pred ----------CEEEEEEeeCCcccCCCCCCCCEEEEcCCcCchhHHHHHHHHHHccCCCCEEEEECCCCCCcchhHHHHH
Confidence 7899998654 56654444568999999999999999999887643 22 2233 44555
Q ss_pred HHhhhcCCCeEE-EEEcCCCCCCCcccCccccCCHHHHH
Q 003558 760 ENGRDTGVNTTI-IIIDNNYEPFFFWTQKKGPIQDKKSI 797 (811)
Q Consensus 760 ~~~~~~~~~~~i-~v~~~~~~~~~~w~g~~G~i~~~~~~ 797 (811)
......+....+ ...+++. +.+|+|++.+.+
T Consensus 501 ~~~~~~~~l~~l~~afSRd~-------~~k~yVqd~l~e 532 (597)
T TIGR01931 501 QNYLKKGVLTKMDLAFSRDQ-------AEKIYVQHRIRE 532 (597)
T ss_pred HHHHHcCCCceeEEEEecCC-------CCCccHHHHHHH
Confidence 554444444322 3334421 346777776543
No 95
>KOG0037 consensus Ca2+-binding protein, EF-Hand protein superfamily [Signal transduction mechanisms]
Probab=99.05 E-value=9.2e-10 Score=110.15 Aligned_cols=154 Identities=16% Similarity=0.137 Sum_probs=128.3
Q ss_pred CCccccCchhHHHHHhhhhhhhc-cCCcccHHHHHHHHHhHccCCCCceehhhhcccccCCCCCHHHHHHHHHHHHccCC
Q 003558 140 PARFDRNKSAAAYALKGLKFISK-TDGGAGWANVEKRFDEITASTNGVLPRARFGECIGMNKDSKDFAVELFDALTRRRN 218 (811)
Q Consensus 140 ~~~~dr~~s~a~~alk~l~~i~~-~~~~~~~~~l~~~F~~lD~d~dG~Is~~ef~~~lg~~~~~~~~~~~lf~~l~d~d~ 218 (811)
|+..|+++++.+.+.++...+.. +-+.-..+-++-+...+|.|++|+|.++||+++...-. ..+.+|+. .|+|+
T Consensus 63 f~~vD~d~sg~i~~~eLq~aLsn~~~~~Fs~~TcrlmI~mfd~~~~G~i~f~EF~~Lw~~i~----~Wr~vF~~-~D~D~ 137 (221)
T KOG0037|consen 63 FQSVDRDRSGRILAKELQQALSNGTWSPFSIETCRLMISMFDRDNSGTIGFKEFKALWKYIN----QWRNVFRT-YDRDR 137 (221)
T ss_pred HHhhCccccccccHHHHHHHhhcCCCCCCCHHHHHHHHHHhcCCCCCccCHHHHHHHHHHHH----HHHHHHHh-cccCC
Confidence 46899999999999998777763 33445668899999999999999999999998875432 37889995 78888
Q ss_pred CCCCceeHHHHHHHHHHhccCChHHHHHHHhhhhcCCCCCceeHHHHHHHHHhhhccCCCcchHHHHHHHHHHHHHHcCC
Q 003558 219 IQGDTITKDQLREFWDQISDQSFDSRLQTFFDMVDKDADGRITEDEVREIISLSASANKLSNIQKQAEEYAALIMEELDP 298 (811)
Q Consensus 219 ~~~G~I~~~EF~~~~~~l~~~~~~e~l~~~F~~fDkD~dG~It~eE~~~il~~~~~~~~l~~~~~~~~e~~~~i~~e~D~ 298 (811)
+|+|+..||..++.+++-..+.+-++.+++.||.-++|.|.+++|.+.+... +... ..|++.|+
T Consensus 138 --SG~I~~sEL~~Al~~~Gy~Lspq~~~~lv~kyd~~~~g~i~FD~FI~ccv~L-------------~~lt-~~Fr~~D~ 201 (221)
T KOG0037|consen 138 --SGTIDSSELRQALTQLGYRLSPQFYNLLVRKYDRFGGGRIDFDDFIQCCVVL-------------QRLT-EAFRRRDT 201 (221)
T ss_pred --CCcccHHHHHHHHHHcCcCCCHHHHHHHHHHhccccCCceeHHHHHHHHHHH-------------HHHH-HHHHHhcc
Confidence 9999999999999999999999999999999999999999999999988521 1111 28899999
Q ss_pred CCCCc--ccHHHHHHHHH
Q 003558 299 DHLGC--IMIDNLEMLLL 314 (811)
Q Consensus 299 d~dG~--Is~eEF~~~l~ 314 (811)
+.+|. |+|++|..|..
T Consensus 202 ~q~G~i~~~y~dfl~~t~ 219 (221)
T KOG0037|consen 202 AQQGSITISYDDFLQMTM 219 (221)
T ss_pred ccceeEEEeHHHHHHHhh
Confidence 99997 56899988653
No 96
>PTZ00184 calmodulin; Provisional
Probab=99.04 E-value=1.3e-09 Score=105.30 Aligned_cols=127 Identities=17% Similarity=0.258 Sum_probs=106.7
Q ss_pred CCccccCchhHHHHHhhhhhhhccCCcccHHHHHHHHHhHccCCCCceehhhhcccccC----CCCCHHHHHHHHHHHHc
Q 003558 140 PARFDRNKSAAAYALKGLKFISKTDGGAGWANVEKRFDEITASTNGVLPRARFGECIGM----NKDSKDFAVELFDALTR 215 (811)
Q Consensus 140 ~~~~dr~~s~a~~alk~l~~i~~~~~~~~~~~l~~~F~~lD~d~dG~Is~~ef~~~lg~----~~~~~~~~~~lf~~l~d 215 (811)
|..+|++++|.+..-+...++.........+.+..+|+.+|.+++|.|++++|..++.. .. ..+.+..+|+ ..|
T Consensus 17 F~~~D~~~~G~i~~~e~~~~l~~~~~~~~~~~~~~~~~~~d~~~~g~i~~~ef~~~l~~~~~~~~-~~~~~~~~F~-~~D 94 (149)
T PTZ00184 17 FSLFDKDGDGTITTKELGTVMRSLGQNPTEAELQDMINEVDADGNGTIDFPEFLTLMARKMKDTD-SEEEIKEAFK-VFD 94 (149)
T ss_pred HHHHcCCCCCcCCHHHHHHHHHHhCCCCCHHHHHHHHHhcCcCCCCcCcHHHHHHHHHHhccCCc-HHHHHHHHHH-hhC
Confidence 46789999999998888877766544445578999999999999999999999988742 12 4456788898 477
Q ss_pred cCCCCCCceeHHHHHHHHHHhccCChHHHHHHHhhhhcCCCCCceeHHHHHHHHH
Q 003558 216 RRNIQGDTITKDQLREFWDQISDQSFDSRLQTFFDMVDKDADGRITEDEVREIIS 270 (811)
Q Consensus 216 ~d~~~~G~I~~~EF~~~~~~l~~~~~~e~l~~~F~~fDkD~dG~It~eE~~~il~ 270 (811)
.++ +|.|+.+||..++..++....++.++.+|+.+|.|++|.|+.+||..++.
T Consensus 95 ~~~--~g~i~~~e~~~~l~~~~~~~~~~~~~~~~~~~d~~~~g~i~~~ef~~~~~ 147 (149)
T PTZ00184 95 RDG--NGFISAAELRHVMTNLGEKLTDEEVDEMIREADVDGDGQINYEEFVKMMM 147 (149)
T ss_pred CCC--CCeEeHHHHHHHHHHHCCCCCHHHHHHHHHhcCCCCCCcCcHHHHHHHHh
Confidence 777 99999999999999887777888999999999999999999999998874
No 97
>cd06203 methionine_synthase_red Human methionine synthase reductase (MSR) restores methionine sythase which is responsible for the regeneration of methionine from homocysteine, as well as the coversion of methyltetrahydrofolate to tetrahydrofolate. In MSR, electrons are transferred from NADPH to FAD to FMN to cob(II)alamin. MSR resembles proteins of the cytochrome p450 family including nitric oxide synthase, the alpha subunit of sulfite reductase, but contains an extended hinge region. NADPH cytochrome p450 reductase (CYPOR) serves as an electron donor in several oxygenase systems and is a component of nitric oxide synthases and methionine synthase reductases. CYPOR transfers two electrons from NADPH to the heme of cytochrome p450 via FAD and FMN. CYPORs resemble ferredoxin reductase (FNR) but have a connecting subdomain inserted within the flavin binding region, which helps orient the FMN binding doamin with the FNR module. Ferredoxin-NADP+ (oxido)reductase is an FAD-containing enzyme
Probab=99.00 E-value=2.9e-09 Score=120.49 Aligned_cols=133 Identities=17% Similarity=0.182 Sum_probs=89.4
Q ss_pred CCeeecCcccCCCCC--CeEEEEEEEc-----CCccHhHHHHhhhccCCCCCCCcccccccCCCCCCCCEEEEEc-ccCC
Q 003558 643 PFEWHPFSITSAPDD--DYLSVHIRTL-----GDWTRQLRTVFSEVCRPPPNGISGLLRAEGHNNPDFPRVLIDG-PYGA 714 (811)
Q Consensus 643 ~~e~HPFSIas~p~~--~~l~~~Ik~~-----g~~T~~L~~~~~~~~~~~~~G~sg~~~~~~~~~~~~~~v~idG-PyG~ 714 (811)
+.+.|+|||+|+|.. +.++++|+.. |-.|..|.++.... .++ ++.|.+.| |.|.
T Consensus 171 ~~~~R~YSIsSsp~~~~~~i~l~v~~v~~~~~G~~S~~L~~l~~~~---~~~---------------G~~v~i~~~~~g~ 232 (398)
T cd06203 171 RLQPRPYSIASSPLEGPGKLRFIFSVVEFPAKGLCTSWLESLCLSA---SSH---------------GVKVPFYLRSSSR 232 (398)
T ss_pred cCCCcceeecCCcccCCCeEEEEEEEEEecCCChhhHHHHHhhhhh---cCC---------------CCEEEEEEecCCC
Confidence 347899999999954 7899998875 44677776654210 002 37899999 6777
Q ss_pred CCCCCC-CCCeEEEEEeCcCHHHHHHHHHHHHHhc-----------------ccc-hhh-HHHHHHHhhhcCCCe-EEEE
Q 003558 715 PAQDYK-EYEVVLLVGLGIGATPMISIVKDIVNNM-----------------KAI-EEE-EENDLENGRDTGVNT-TIII 773 (811)
Q Consensus 715 ~~~~~~-~~~~vllIagGiGITP~lsil~~l~~~~-----------------~~~-~~~-~~~el~~~~~~~~~~-~i~v 773 (811)
|..+.. ...++||||||+||||++|++++..... ++. .+. +.+|+.+..+.+... .+.+
T Consensus 233 F~lp~~~~~~piImIa~GtGIAP~rs~lq~~~~~~~~~~~~~~~~~~Lf~G~R~~~~d~~y~~El~~~~~~~~~~~~~~a 312 (398)
T cd06203 233 FRLPPDDLRRPIIMVGPGTGVAPFLGFLQHREKLKESHTETVFGEAWLFFGCRHRDRDYLFRDELEEFLEEGILTRLIVA 312 (398)
T ss_pred cCCCCcCCCCCEEEEcCCcChHHHHHHHHHHHHHHhhcccCCCCCEEEEEeCCCCCcchhHHHHHHHHHHcCCCceEEEE
Confidence 765443 4578999999999999999999876521 112 223 445555555555543 4445
Q ss_pred EcCCCCCCCcccCccccCCHHHHH
Q 003558 774 IDNNYEPFFFWTQKKGPIQDKKSI 797 (811)
Q Consensus 774 ~~~~~~~~~~w~g~~G~i~~~~~~ 797 (811)
.+++.+. | |.+|+|++.+.+
T Consensus 313 ~SRd~~~---~-g~k~yVqd~l~~ 332 (398)
T cd06203 313 FSRDEND---G-STPKYVQDKLEE 332 (398)
T ss_pred ECCCCCC---C-CCceecchHHHh
Confidence 5655554 4 678999886554
No 98
>cd06207 CyPoR_like NADPH cytochrome p450 reductase (CYPOR) serves as an electron donor in several oxygenase systems and is a component of nitric oxide synthases and methionine synthase reductases. CYPOR transfers two electrons from NADPH to the heme of cytochrome p450 via FAD and FMN. Ferredoxin-NADP+ (oxido)reductase is an FAD-containing enzyme that catalyzes the reversible electron transfer between NADP(H) and electron carrier proteins such as ferredoxin and flavodoxin. Isoforms of these flavoproteins (i.e. having a non-covalently bound FAD as a prosthetic group) are present in chloroplasts, mitochondria, and bacteria in which they participate in a wide variety of redox metabolic pathways. The C-terminal domain contains most of the NADP(H) binding residues and the N-terminal domain interacts non-covalently with the isoalloxazine rings of the flavin molecule which lies largely in a large gap betweed the two domains. Ferredoxin-NADP+ reductase first accepts one electron from reduced fe
Probab=98.98 E-value=3.2e-09 Score=119.70 Aligned_cols=81 Identities=16% Similarity=0.158 Sum_probs=63.2
Q ss_pred CCeeecCcccCCCC--CCeEEEEEEEc-----------CCccHhHHHHhhhccCCCCCCCcccccccCCCCCCCCEEEEE
Q 003558 643 PFEWHPFSITSAPD--DDYLSVHIRTL-----------GDWTRQLRTVFSEVCRPPPNGISGLLRAEGHNNPDFPRVLID 709 (811)
Q Consensus 643 ~~e~HPFSIas~p~--~~~l~~~Ik~~-----------g~~T~~L~~~~~~~~~~~~~G~sg~~~~~~~~~~~~~~v~id 709 (811)
+.+.|||||+|+|. .+.++|+|+.. |-.|..|.+ .++ +++|.|.
T Consensus 161 ~l~~R~YSIaSsp~~~~~~i~l~V~~v~~~~~~~~~~~G~~S~~L~~--------l~~---------------Gd~v~v~ 217 (382)
T cd06207 161 LIKPRYYSISSSPLKNPNEVHLLVSLVSWKTPSGRSRYGLCSSYLAG--------LKV---------------GQRVTVF 217 (382)
T ss_pred CCCCceeeecCCCcCCCCeEEEEEEEEEeeCCCCCeecccHHHHHhh--------cCC---------------CCEEEEE
Confidence 45889999999995 47899999976 444444432 123 3789999
Q ss_pred cccCCCCCCCCCCCeEEEEEeCcCHHHHHHHHHHHHH
Q 003558 710 GPYGAPAQDYKEYEVVLLVGLGIGATPMISIVKDIVN 746 (811)
Q Consensus 710 GPyG~~~~~~~~~~~vllIagGiGITP~lsil~~l~~ 746 (811)
||+|.|..+.....++||||||+|||||+|++++...
T Consensus 218 ~p~g~F~lp~~~~~plImIa~GtGIAP~rs~l~~~~~ 254 (382)
T cd06207 218 IKKSSFKLPKDPKKPIIMVGPGTGLAPFRAFLQERAA 254 (382)
T ss_pred EECCcccCCCCCCCCEEEEcCCccHHHHHHHHHHHHH
Confidence 9999987544445789999999999999999998753
No 99
>KOG4223 consensus Reticulocalbin, calumenin, DNA supercoiling factor, and related Ca2+-binding proteins of the CREC family (EF-Hand protein superfamily) [Signal transduction mechanisms; Intracellular trafficking, secretion, and vesicular transport]
Probab=98.95 E-value=2.3e-09 Score=113.10 Aligned_cols=160 Identities=19% Similarity=0.223 Sum_probs=112.1
Q ss_pred CccccCchhHHHHHhhhhhhhc--------cCC------cccHHHHHHHHHhHccCCCCceehhhhcccccCCCCCHHHH
Q 003558 141 ARFDRNKSAAAYALKGLKFISK--------TDG------GAGWANVEKRFDEITASTNGVLPRARFGECIGMNKDSKDFA 206 (811)
Q Consensus 141 ~~~dr~~s~a~~alk~l~~i~~--------~~~------~~~~~~l~~~F~~lD~d~dG~Is~~ef~~~lg~~~~~~~~~ 206 (811)
...|+++++.+..-+-+...-. .+. ...+.+=+++|++-|.|+||.++++||...+...+ ...+.
T Consensus 120 ~~~d~~~Dg~i~~eey~~~~~~~~~~~~~~~d~e~~~~~~km~~rDe~rFk~AD~d~dg~lt~EEF~aFLHPEe-~p~M~ 198 (325)
T KOG4223|consen 120 DEYDKNKDGFITWEEYLPQTYGRVDLPDEFPDEEDNEEYKKMIARDEERFKAADQDGDGSLTLEEFTAFLHPEE-HPHMK 198 (325)
T ss_pred HHhccCccceeeHHHhhhhhhhcccCccccccchhcHHHHHHHHHHHHHHhhcccCCCCcccHHHHHhccChhh-cchHH
Confidence 3577778777765554433221 111 12345668899999999999999999999985543 22111
Q ss_pred H-HHHHHHHccCCCCCCceeHHHHHHHHHHhccCCh-----HHHHHHHhhhhcCCCCCceeHHHHHHHHHhhhccCCCcc
Q 003558 207 V-ELFDALTRRRNIQGDTITKDQLREFWDQISDQSF-----DSRLQTFFDMVDKDADGRITEDEVREIISLSASANKLSN 280 (811)
Q Consensus 207 ~-~lf~~l~d~d~~~~G~I~~~EF~~~~~~l~~~~~-----~e~l~~~F~~fDkD~dG~It~eE~~~il~~~~~~~~l~~ 280 (811)
. -+-+.+.+.|.|.+|.|+++||+.-+..-..+.. ..+-+.+|...|+|+||+++.+|++.-|. .. +
T Consensus 199 ~iVi~Etl~d~Dkn~DG~I~~eEfigd~~~~~~~~~epeWv~~Ere~F~~~~DknkDG~L~~dEl~~WI~--P~-~---- 271 (325)
T KOG4223|consen 199 DIVIAETLEDIDKNGDGKISLEEFIGDLYSHEGNEEEPEWVLTEREQFFEFRDKNKDGKLDGDELLDWIL--PS-E---- 271 (325)
T ss_pred HHHHHHHHhhcccCCCCceeHHHHHhHHhhccCCCCCcccccccHHHHHHHhhcCCCCccCHHHHhcccC--CC-C----
Confidence 1 1223455666666999999999987765543222 22446899999999999999999997774 11 1
Q ss_pred hHHHHHHHHHHHHHHcCCCCCCcccHHHH
Q 003558 281 IQKQAEEYAALIMEELDPDHLGCIMIDNL 309 (811)
Q Consensus 281 ~~~~~~e~~~~i~~e~D~d~dG~Is~eEF 309 (811)
...++.++..++-+.|.|+||++|++|-
T Consensus 272 -~d~A~~EA~hL~~eaD~dkD~kLs~eEI 299 (325)
T KOG4223|consen 272 -QDHAKAEARHLLHEADEDKDGKLSKEEI 299 (325)
T ss_pred -ccHHHHHHHHHhhhhccCccccccHHHH
Confidence 3456778888999999999999999974
No 100
>cd06206 bifunctional_CYPOR These bifunctional proteins fuse N-terminal cytochrome p450 with a cytochrome p450 reductase (CYPOR). NADPH cytochrome p450 reductase serves as an electron donor in several oxygenase systems and is a component of nitric oxide synthases and methionine synthase reductases. CYPOR transfers two electrons from NADPH to the heme of cytochrome p450 via FAD and FMN. Ferredoxin-NADP+ (oxido)reductase is an FAD-containing enzyme that catalyzes the reversible electron transfer between NADP(H) and electron carrier proteins such as ferredoxin and flavodoxin. Isoforms of these flavoproteins (i.e. having a non-covalently bound FAD as a prosthetic group) are present in chloroplasts, mitochondria, and bacteria in which they participate in a wide variety of redox metabolic pathways. The C-terminal domain contains most of the NADP(H) binding residues and the N-terminal domain interacts non-covalently with the isoalloxazine rings of the flavin molecule which lies largely in a la
Probab=98.94 E-value=2.5e-09 Score=120.61 Aligned_cols=92 Identities=12% Similarity=0.205 Sum_probs=66.4
Q ss_pred cCCCcEEEEEeccCCCCeeecCcccCCCC--CCeEEEEEEE------------cCCccHhHHHHhhhccCCCCCCCcccc
Q 003558 628 YKSGQYMFVNCAAVSPFEWHPFSITSAPD--DDYLSVHIRT------------LGDWTRQLRTVFSEVCRPPPNGISGLL 693 (811)
Q Consensus 628 ~~pGQyv~l~~p~~s~~e~HPFSIas~p~--~~~l~~~Ik~------------~g~~T~~L~~~~~~~~~~~~~G~sg~~ 693 (811)
...||++.+. |.. +.|||||+|+|. ++.+++.|+. .|..|..|.+ + ++|
T Consensus 147 ~~~~~~l~~~-p~l---~~R~YSIaSsp~~~~~~i~l~v~v~~~~~~~~~~~~~G~~S~~L~~-l-------~~G----- 209 (384)
T cd06206 147 LPLATFLAML-PPM---RPRQYSISSSPLVDPGHATLTVSVLDAPALSGQGRYRGVASSYLSS-L-------RPG----- 209 (384)
T ss_pred CCHHHHHHhC-ccc---CCcceeeccCccCCCCeEEEEEEEEEeecCCCCceeeeehHHHHhh-C-------CCC-----
Confidence 3458888775 543 779999999984 4556666654 3445665543 2 234
Q ss_pred cccCCCCCCCCEEE--EEcccCCCCCCCCCCCeEEEEEeCcCHHHHHHHHHHHHH
Q 003558 694 RAEGHNNPDFPRVL--IDGPYGAPAQDYKEYEVVLLVGLGIGATPMISIVKDIVN 746 (811)
Q Consensus 694 ~~~~~~~~~~~~v~--idGPyG~~~~~~~~~~~vllIagGiGITP~lsil~~l~~ 746 (811)
+.|. +.||+|.+..+....+++||||||+||||++|++++...
T Consensus 210 ----------d~v~v~i~~p~g~F~l~~~~~~piImIa~GtGIAP~~s~l~~~~~ 254 (384)
T cd06206 210 ----------DSIHVSVRPSHSAFRPPSDPSTPLIMIAAGTGLAPFRGFLQERAA 254 (384)
T ss_pred ----------CeEEEEEecCCCccCCCCCCCCCEEEEeCCCCcHHHHHHHHHHHH
Confidence 5555 579999987654456789999999999999999998764
No 101
>PLN02964 phosphatidylserine decarboxylase
Probab=98.87 E-value=6e-09 Score=122.01 Aligned_cols=100 Identities=13% Similarity=0.228 Sum_probs=85.3
Q ss_pred ccHHHHHHHHHhHccCCCCceehhhhccccc-CCCCCHH---HHHHHHHHHHccCCCCCCceeHHHHHHHHHHhccCChH
Q 003558 167 AGWANVEKRFDEITASTNGVLPRARFGECIG-MNKDSKD---FAVELFDALTRRRNIQGDTITKDQLREFWDQISDQSFD 242 (811)
Q Consensus 167 ~~~~~l~~~F~~lD~d~dG~Is~~ef~~~lg-~~~~~~~---~~~~lf~~l~d~d~~~~G~I~~~EF~~~~~~l~~~~~~ 242 (811)
.+.+++++.|+.+|+|+||.+ ...+...+| ..+ +++ +++++|+. .|.++ +|.|+++||++++..+.....+
T Consensus 140 kqi~elkeaF~lfD~dgdG~i-Lg~ilrslG~~~p-te~e~~fi~~mf~~-~D~Dg--dG~IdfdEFl~lL~~lg~~~se 214 (644)
T PLN02964 140 QEPESACESFDLLDPSSSNKV-VGSIFVSCSIEDP-VETERSFARRILAI-VDYDE--DGQLSFSEFSDLIKAFGNLVAA 214 (644)
T ss_pred HHHHHHHHHHHHHCCCCCCcC-HHHHHHHhCCCCC-CHHHHHHHHHHHHH-hCCCC--CCeEcHHHHHHHHHHhccCCCH
Confidence 466899999999999999997 555555567 355 444 47899995 67777 9999999999999988877888
Q ss_pred HHHHHHhhhhcCCCCCceeHHHHHHHHHh
Q 003558 243 SRLQTFFDMVDKDADGRITEDEVREIISL 271 (811)
Q Consensus 243 e~l~~~F~~fDkD~dG~It~eE~~~il~~ 271 (811)
++++.+|+.||+|+||+|+.+||++++..
T Consensus 215 EEL~eaFk~fDkDgdG~Is~dEL~~vL~~ 243 (644)
T PLN02964 215 NKKEELFKAADLNGDGVVTIDELAALLAL 243 (644)
T ss_pred HHHHHHHHHhCCCCCCcCCHHHHHHHHHh
Confidence 99999999999999999999999999974
No 102
>PRK06214 sulfite reductase; Provisional
Probab=98.79 E-value=2.8e-08 Score=115.21 Aligned_cols=81 Identities=22% Similarity=0.369 Sum_probs=59.7
Q ss_pred CCeeecCcccCCCC--CCeEEEEEEEc----------CCccHhHHHHhhhccCCCCCCCcccccccCCCCCCCCEEEE--
Q 003558 643 PFEWHPFSITSAPD--DDYLSVHIRTL----------GDWTRQLRTVFSEVCRPPPNGISGLLRAEGHNNPDFPRVLI-- 708 (811)
Q Consensus 643 ~~e~HPFSIas~p~--~~~l~~~Ik~~----------g~~T~~L~~~~~~~~~~~~~G~sg~~~~~~~~~~~~~~v~i-- 708 (811)
+.+.|||||+|+|. .+.++|+|+.+ |-.|..|.+.+ ++| +.|.|
T Consensus 313 ~l~pR~YSISSsP~~~~~~i~ltV~~V~~~~~~~~~~G~~S~~L~~~l-------~~G---------------d~V~v~i 370 (530)
T PRK06214 313 PLQPRLYSISSSPKATPGRVSLTVDAVRYEIGSRLRLGVASTFLGERL-------APG---------------TRVRVYV 370 (530)
T ss_pred CCCcEEEEeccCCcCCCCEEEEEEEEEeeccCCccccchhhHHHHhcC-------CCC---------------CEEEEEe
Confidence 45889999999994 57899999865 45556565433 334 55555
Q ss_pred EcccCCCCCCCCCCCeEEEEEeCcCHHHHHHHHHHHHH
Q 003558 709 DGPYGAPAQDYKEYEVVLLVGLGIGATPMISIVKDIVN 746 (811)
Q Consensus 709 dGPyG~~~~~~~~~~~vllIagGiGITP~lsil~~l~~ 746 (811)
.+|+| |..+.....++||||+|+|||||+|++++...
T Consensus 371 ~~~~g-F~lp~~~~~PiImIg~GTGIAPfrsfLq~r~~ 407 (530)
T PRK06214 371 QKAHG-FALPADPNTPIIMVGPGTGIAPFRAFLHERAA 407 (530)
T ss_pred cCCCC-CccCCCCCCCEEEEcCCeeHHHHHHHHHHHHH
Confidence 56777 65543445689999999999999999998664
No 103
>PRK10953 cysJ sulfite reductase subunit alpha; Provisional
Probab=98.79 E-value=1.5e-08 Score=119.79 Aligned_cols=96 Identities=13% Similarity=0.136 Sum_probs=69.6
Q ss_pred cccCCCcEEEEEeccCCCCeeecCcccCCCC--CCeEEEEEEEc----------CCccHhHHHHhhhccCCCCCCCcccc
Q 003558 626 FRYKSGQYMFVNCAAVSPFEWHPFSITSAPD--DDYLSVHIRTL----------GDWTRQLRTVFSEVCRPPPNGISGLL 693 (811)
Q Consensus 626 ~~~~pGQyv~l~~p~~s~~e~HPFSIas~p~--~~~l~~~Ik~~----------g~~T~~L~~~~~~~~~~~~~G~sg~~ 693 (811)
.++.||||+.+..| .+.|+|||+|+|. ++.+++.|+.+ |..|..|.+.+ ++
T Consensus 370 ~~~~~~q~l~ll~~----l~pR~YSIaSsp~~~~~~v~ltv~~v~~~~~g~~~~G~~S~~L~~~l-------~~------ 432 (600)
T PRK10953 370 AQLDAEQLIGLLRP----LTPRLYSIASSQAEVENEVHITVGVVRYDIEGRARAGGASSFLADRL-------EE------ 432 (600)
T ss_pred CCCCHHHHHHhCCC----CCCeeeecccCCCCCCCeEEEEEEEEEeecCCCCcCceEhhhhhhcC-------CC------
Confidence 36789999988765 3679999999984 46677776443 22344443322 23
Q ss_pred cccCCCCCCCCEEEEEcccC-CCCCCCCCCCeEEEEEeCcCHHHHHHHHHHHHHh
Q 003558 694 RAEGHNNPDFPRVLIDGPYG-APAQDYKEYEVVLLVGLGIGATPMISIVKDIVNN 747 (811)
Q Consensus 694 ~~~~~~~~~~~~v~idGPyG-~~~~~~~~~~~vllIagGiGITP~lsil~~l~~~ 747 (811)
+++|.|.||.| .|..+.....++||||+|+|||||+|++++....
T Consensus 433 ---------Gd~v~v~~~~~~~F~lp~~~~~piImIg~GTGIAPfrsflq~r~~~ 478 (600)
T PRK10953 433 ---------EGEVRVFIEHNDNFRLPANPETPVIMIGPGTGIAPFRAFMQQRAAD 478 (600)
T ss_pred ---------CCEEEEEeccCCcccCCCCCCCCEEEEecCcCcHHHHHHHHHHHHc
Confidence 37899999886 5655444557899999999999999999988765
No 104
>KOG3378 consensus Globins and related hemoproteins [Energy production and conversion]
Probab=98.78 E-value=2.8e-08 Score=101.83 Aligned_cols=133 Identities=17% Similarity=0.168 Sum_probs=96.3
Q ss_pred ccccceEEEEEEEecCCEEEEEEEcCC----CcccCCCcEEEEEeccCC--C--CeeecCcccCCCCCCeEEEEEEEcCC
Q 003558 598 SSIKAVSIQKVAVYPGNVLALHMSKPD----RFRYKSGQYMFVNCAAVS--P--FEWHPFSITSAPDDDYLSVHIRTLGD 669 (811)
Q Consensus 598 ~~~~~~~i~~v~~~~~~v~~l~l~~p~----~~~~~pGQyv~l~~p~~s--~--~e~HPFSIas~p~~~~l~~~Ik~~g~ 669 (811)
-++.+++|...+..++|+..+.+.+-. .....|||||.+....++ . ..-+.+|..++...+.+.|.||...+
T Consensus 147 ~G~~~F~vT~~~~~sSDv~~~~~~PK~~~~~~~~~~PGQYvsV~~~~~~~~~k~~~~~~~S~~~~t~rN~~R~sVr~~A~ 226 (385)
T KOG3378|consen 147 DGEVEFKVTELINESSDVKSVYLGPKDPAFRISHAHPGQYVSVLWEIPGLSHKTLREYSLSNRVDTCRNQFRISVRRVAG 226 (385)
T ss_pred CCccceeeeeeeccccceeEEEecCCCcceeeccCCCCceEEEeecCCccchhHHHHHHHhhhhhhhccceeEEEeehhc
Confidence 345788999999999999999997432 235789999999875443 1 12234566666667899999998755
Q ss_pred ccHhHHHHhhh-ccCCCCCCCcccccccCCCCCCCCEEEEEcccCCCCCC---CCCCCeEEEEEeCcCHHHHHHHHHHHH
Q 003558 670 WTRQLRTVFSE-VCRPPPNGISGLLRAEGHNNPDFPRVLIDGPYGAPAQD---YKEYEVVLLVGLGIGATPMISIVKDIV 745 (811)
Q Consensus 670 ~T~~L~~~~~~-~~~~~~~G~sg~~~~~~~~~~~~~~v~idGPyG~~~~~---~~~~~~vllIagGiGITP~lsil~~l~ 745 (811)
+++++ .+++.+.| +.|-+..|-|.|... .....+++|.|||+||||+++|++..+
T Consensus 227 ------G~VS~~~H~~~KVG---------------D~v~~S~PAG~F~~~r~~~~~N~PL~~~a~GiGiTPLi~iiE~~~ 285 (385)
T KOG3378|consen 227 ------GVVSNFVHDNLKVG---------------DIVGVSPPAGNFVYKRSEENVNRPLLCFAGGIGITPLIPIIETAL 285 (385)
T ss_pred ------hhhHHHhhcccccc---------------ceeeccCCCccceeehhhhccCCceEEecCCcCccccHHHHHHHH
Confidence 34444 23344444 889999999998732 334588999999999999999999877
Q ss_pred Hhcccc
Q 003558 746 NNMKAI 751 (811)
Q Consensus 746 ~~~~~~ 751 (811)
.-+.++
T Consensus 286 ~C~~~R 291 (385)
T KOG3378|consen 286 LCYSSR 291 (385)
T ss_pred hcCCCC
Confidence 654443
No 105
>KOG4223 consensus Reticulocalbin, calumenin, DNA supercoiling factor, and related Ca2+-binding proteins of the CREC family (EF-Hand protein superfamily) [Signal transduction mechanisms; Intracellular trafficking, secretion, and vesicular transport]
Probab=98.73 E-value=4.6e-08 Score=103.38 Aligned_cols=147 Identities=15% Similarity=0.169 Sum_probs=102.6
Q ss_pred hhccCCcccHHHHHHHHHhHccCCCCceehhhhcccccCCC--C-CHHHHHHHHHHHHccCCCCCCceeHHHHHHHHHHh
Q 003558 160 ISKTDGGAGWANVEKRFDEITASTNGVLPRARFGECIGMNK--D-SKDFAVELFDALTRRRNIQGDTITKDQLREFWDQI 236 (811)
Q Consensus 160 i~~~~~~~~~~~l~~~F~~lD~d~dG~Is~~ef~~~lg~~~--~-~~~~~~~lf~~l~d~d~~~~G~I~~~EF~~~~~~l 236 (811)
..+....+.-+.+.++|.++|.++||.|+.+|+..-+...- . ..+..+++.. .|++ .+|.|+++|++..+...
T Consensus 67 fd~l~~ee~~~rl~~l~~~iD~~~Dgfv~~~El~~wi~~s~k~~v~~~~~~~~~~--~d~~--~Dg~i~~eey~~~~~~~ 142 (325)
T KOG4223|consen 67 FDQLTPEESQERLGKLVPKIDSDSDGFVTESELKAWIMQSQKKYVVEEAARRWDE--YDKN--KDGFITWEEYLPQTYGR 142 (325)
T ss_pred hhhhCcchhHHHHHHHHhhhcCCCCCceeHHHHHHHHHHHHHHHHHHHHHHHHHH--hccC--ccceeeHHHhhhhhhhc
Confidence 33444455678999999999999999999999998774321 0 1122333333 4444 49999999999887642
Q ss_pred c-------cCC---hHH----HHHHHhhhhcCCCCCceeHHHHHHHHHhhhccCCCcchHHHHHH-HHHHHHHHcCCCCC
Q 003558 237 S-------DQS---FDS----RLQTFFDMVDKDADGRITEDEVREIISLSASANKLSNIQKQAEE-YAALIMEELDPDHL 301 (811)
Q Consensus 237 ~-------~~~---~~e----~l~~~F~~fDkD~dG~It~eE~~~il~~~~~~~~l~~~~~~~~e-~~~~i~~e~D~d~d 301 (811)
. +.. ... +-+.-|+.-|.|+||..|.+||..++- .. . -..+.+ .++.-|+++|+|+|
T Consensus 143 ~~~~~~~~d~e~~~~~~km~~rDe~rFk~AD~d~dg~lt~EEF~aFLH--PE----e--~p~M~~iVi~Etl~d~Dkn~D 214 (325)
T KOG4223|consen 143 VDLPDEFPDEEDNEEYKKMIARDEERFKAADQDGDGSLTLEEFTAFLH--PE----E--HPHMKDIVIAETLEDIDKNGD 214 (325)
T ss_pred ccCccccccchhcHHHHHHHHHHHHHHhhcccCCCCcccHHHHHhccC--hh----h--cchHHHHHHHHHHhhcccCCC
Confidence 1 111 111 235569999999999999999998873 11 1 112323 45678999999999
Q ss_pred CcccHHHHHHHHHhCCc
Q 003558 302 GCIMIDNLEMLLLQAPA 318 (811)
Q Consensus 302 G~Is~eEF~~~l~~~p~ 318 (811)
|+|+++||..=|-.++.
T Consensus 215 G~I~~eEfigd~~~~~~ 231 (325)
T KOG4223|consen 215 GKISLEEFIGDLYSHEG 231 (325)
T ss_pred CceeHHHHHhHHhhccC
Confidence 99999999997766553
No 106
>cd05022 S-100A13 S-100A13: S-100A13 domain found in proteins similar to S100A13. S100A13 is a calcium-binding protein belonging to a large S100 vertebrate-specific protein family within the EF-hand superfamily of calcium-binding proteins. Note that the S-100 hierarchy, to which this S-100A13 group belongs, contains only S-100 EF-hand domains, other EF-hands have been modeled separately. S100A13 is involved in the cellular export of interleukin-1 (IL-1) and of fibroblast growth factor-1 (FGF-1), which plays an important role in angiogenesis and tissue regeneration. Export is based on the CuII-dependent formation of multiprotein complexes containing the S100A13 protein. Assembly of these complexes occurs near the inner surface of the plasma membrane. Binding of two Ca(II) ions per monomer triggers key conformational changes leading to the creation of two identical and symmetrical Cu(II)-binding sites on the surface of the protein, close to the interface between the two monomers. These Cu
Probab=98.72 E-value=2.6e-08 Score=88.21 Aligned_cols=68 Identities=16% Similarity=0.187 Sum_probs=54.5
Q ss_pred HHHHHHhhhhcC-CCCCceeHHHHHHHHHhhhccCCCcchHHHHHHHHHHHHHHcCCCCCCcccHHHHHHHHHhC
Q 003558 243 SRLQTFFDMVDK-DADGRITEDEVREIISLSASANKLSNIQKQAEEYAALIMEELDPDHLGCIMIDNLEMLLLQA 316 (811)
Q Consensus 243 e~l~~~F~~fDk-D~dG~It~eE~~~il~~~~~~~~l~~~~~~~~e~~~~i~~e~D~d~dG~Is~eEF~~~l~~~ 316 (811)
..+..+|+.||+ |++|+|+.+||+.++..... +.++. + +.++.+|+.+|.|+||.|+|+||..+|...
T Consensus 8 ~~l~~~F~~fd~~~~~g~i~~~ELk~ll~~elg-~~ls~---~--~~v~~mi~~~D~d~DG~I~F~EF~~l~~~l 76 (89)
T cd05022 8 ETLVSNFHKASVKGGKESLTASEFQELLTQQLP-HLLKD---V--EGLEEKMKNLDVNQDSKLSFEEFWELIGEL 76 (89)
T ss_pred HHHHHHHHHHhCCCCCCeECHHHHHHHHHHHhh-hhccC---H--HHHHHHHHHhCCCCCCCCcHHHHHHHHHHH
Confidence 457899999999 99999999999999974221 22321 1 456779999999999999999999998643
No 107
>cd06204 CYPOR NADPH cytochrome p450 reductase (CYPOR) serves as an electron donor in several oxygenase systems and is a component of nitric oxide synthases and methionine synthase reductases. CYPOR transfers two electrons from NADPH to the heme of cytochrome p450 via FAD and FMN. Ferredoxin-NADP+ (oxido)reductase is an FAD-containing enzyme that catalyzes the reversible electron transfer between NADP(H) and electron carrier proteins such as ferredoxin and flavodoxin. Isoforms of these flavoproteins (i.e. having a non-covalently bound FAD as a prosthetic group) are present in chloroplasts, mitochondria, and bacteria in which they participate in a wide variety of redox metabolic pathways. The C-terminal domain contains most of the NADP(H) binding residues and the N-terminal domain interacts non-covalently with the isoalloxazine rings of the flavin molecule which lies largely in a large gap betweed the two domains. Ferredoxin-NADP+ reductase first accepts one electron from reduced ferredo
Probab=98.69 E-value=1.2e-07 Score=107.99 Aligned_cols=100 Identities=16% Similarity=0.195 Sum_probs=63.9
Q ss_pred CCeeecCcccCCCC--CCeEEEEEEEc-----------CCccHhHHHHhhhccC-CCCCCCcccccccCCCCCCCCEEEE
Q 003558 643 PFEWHPFSITSAPD--DDYLSVHIRTL-----------GDWTRQLRTVFSEVCR-PPPNGISGLLRAEGHNNPDFPRVLI 708 (811)
Q Consensus 643 ~~e~HPFSIas~p~--~~~l~~~Ik~~-----------g~~T~~L~~~~~~~~~-~~~~G~sg~~~~~~~~~~~~~~v~i 708 (811)
+.+.|+|||+|+|. .+.+++.|+.. |-.|..|.+....... ...+. . .+... .+...++.|.+
T Consensus 175 ~~~pR~YSIsSsp~~~~~~i~ltV~~v~~~~~~~~~~~G~~S~~L~~~~~~~~~~~~~~~-~-~~~~~-~~~~~g~~v~v 251 (416)
T cd06204 175 RLQPRYYSISSSSKVHPNRIHITAVVVKYPTPTGRIIKGVATNWLLALKPALNGEKPPTP-Y-YLSGP-RKKGGGSKVPV 251 (416)
T ss_pred cCCCcceeeccCccCCCCEEEEEEEEEEeeCCCCCEEeeeehHHHHhhhhhhcccccccc-c-ccccc-cccCCCCeEEE
Confidence 35889999999994 46788888754 4456666654421000 00000 0 00000 00012578999
Q ss_pred EcccCCCCCCCCCCCeEEEEEeCcCHHHHHHHHHHHH
Q 003558 709 DGPYGAPAQDYKEYEVVLLVGLGIGATPMISIVKDIV 745 (811)
Q Consensus 709 dGPyG~~~~~~~~~~~vllIagGiGITP~lsil~~l~ 745 (811)
.+|.|.|..+.....++||||||+||||++|++++..
T Consensus 252 ~~~~g~F~lp~~~~~piImIa~GtGIAP~~s~l~~~~ 288 (416)
T cd06204 252 FVRRSNFRLPTKPSTPVIMIGPGTGVAPFRGFIQERA 288 (416)
T ss_pred EEecCCCCCCCCCCCCEEEEeCCcchHHHHHHHHHHH
Confidence 9999988764444578999999999999999999864
No 108
>cd06202 Nitric_oxide_synthase The ferredoxin-reductase (FNR) like C-terminal domain of the nitric oxide synthase (NOS) fuses with a heme-containing N-terminal oxidase domain. The reductase portion is similar in structure to NADPH dependent cytochrome-450 reductase (CYPOR), having an inserted connecting sub-domain within the FAD binding portion of FNR. NOS differs from CYPOR in a requirement for the cofactor tetrahydrobiopterin and unlike most CYPOR is dimeric. Nitric oxide synthase produces nitric oxide in the conversion of L-arginine to L-citruline. NOS has been implicated in a variety of processes including cytotoxicity, anti-inflamation, neurotransmission, and vascular smooth muscle relaxation.
Probab=98.66 E-value=2e-07 Score=105.89 Aligned_cols=125 Identities=18% Similarity=0.183 Sum_probs=77.4
Q ss_pred CeeecCcccCCCC--CCeEEEEEEEc-------------CCccHhHHHHhhhccCCCCCCCcccccccCCCCCCCCEEEE
Q 003558 644 FEWHPFSITSAPD--DDYLSVHIRTL-------------GDWTRQLRTVFSEVCRPPPNGISGLLRAEGHNNPDFPRVLI 708 (811)
Q Consensus 644 ~e~HPFSIas~p~--~~~l~~~Ik~~-------------g~~T~~L~~~~~~~~~~~~~G~sg~~~~~~~~~~~~~~v~i 708 (811)
...|+|||+|+|. .+.+++.|+.+ |-.|..|.+ .++| +.|.|
T Consensus 175 l~pR~YSIsSsp~~~~~~~~l~v~vv~~~~~~~~~~~~~G~~S~~L~~--------l~~G---------------d~v~v 231 (406)
T cd06202 175 LQPRYYSISSSPDMYPGEIHLTVAVVSYRTRDGQGPVHHGVCSTWLNG--------LTPG---------------DTVPC 231 (406)
T ss_pred cCCcccccCCCccCCCCeEEEEEEEEEEECCCCCCCcccccHHHHHHh--------CCCC---------------CEEEE
Confidence 4789999999984 46777777653 334444432 2333 77888
Q ss_pred EcccC-CCCCCCCCCCeEEEEEeCcCHHHHHHHHHHHHHh-------------------cccc-hh-hHHHHHHHhhhcC
Q 003558 709 DGPYG-APAQDYKEYEVVLLVGLGIGATPMISIVKDIVNN-------------------MKAI-EE-EEENDLENGRDTG 766 (811)
Q Consensus 709 dGPyG-~~~~~~~~~~~vllIagGiGITP~lsil~~l~~~-------------------~~~~-~~-~~~~el~~~~~~~ 766 (811)
.+|.| .|..+.....++||||+|+|||||+|++++.... .++. .+ ++.+|+......+
T Consensus 232 ~~~~~~~F~lp~~~~~piImIa~GTGIAPfrsflq~r~~~~~~~~~~~~~~g~v~L~~G~R~~~~d~ly~~El~~~~~~~ 311 (406)
T cd06202 232 FVRSAPSFHLPEDPSVPVIMVGPGTGIAPFRSFWQQRQYDLRMSEDPGKKFGDMTLFFGCRNSTIDDIYKEETEEAKNKG 311 (406)
T ss_pred EEeeCCccCCCCCCCCCEEEEcCCcChHHHHHHHHHHHHHhhhcccccCCCCCEEEEEcCCCCCcccchHHHHHHHHHcC
Confidence 77543 5554334457899999999999999999975421 0112 22 3455655555555
Q ss_pred CCe-EEEEEcCCCCCCCcccCccccCCHHHHH
Q 003558 767 VNT-TIIIIDNNYEPFFFWTQKKGPIQDKKSI 797 (811)
Q Consensus 767 ~~~-~i~v~~~~~~~~~~w~g~~G~i~~~~~~ 797 (811)
... .+.+.+++++ +.+|+|++.+.+
T Consensus 312 ~~~~~~~a~SR~~~------~~k~yVq~~l~~ 337 (406)
T cd06202 312 VLTEVYTALSREPG------KPKTYVQDLLKE 337 (406)
T ss_pred CCceEEEEEcCCCC------CCCeehhhHHHH
Confidence 543 3444554332 246888876543
No 109
>cd05026 S-100Z S-100Z: S-100Z domain found in proteins similar to S100Z. S100Z is a member of the S100 domain family within the EF-hand Ca2+-binding proteins superfamily. Note that the S-100 hierarchy, to which this S-100Z group belongs, contains only S-100 EF-hand domains, other EF-hands have been modeled separately.S100 proteins exhibit unique patterns of tissue- and cell type-specific expression and have been implicated in the Ca2+-dependent regulation of diverse physiological processes, including cell cycle regulation, differentiation, growth, and metabolic control. S100Z is normally expressed in various tissues, with its highest level of expression being in spleen and leukocytes. The function of S100Z remains unclear. Preliminary structural data suggests that S100Z is homodimer, however a heterodimer with S100P has been reported. S100Z is capable of binding calcium ions. When calcium binds to S110Z, the protein experiences a conformational change, which exposes hydrophobic surfac
Probab=98.61 E-value=1.1e-07 Score=85.32 Aligned_cols=70 Identities=19% Similarity=0.339 Sum_probs=52.6
Q ss_pred HHHHHHhhhhc-CCCCC-ceeHHHHHHHHHhhhccCCCcchHHHHHHHHHHHHHHcCCCCCCcccHHHHHHHHHh
Q 003558 243 SRLQTFFDMVD-KDADG-RITEDEVREIISLSASANKLSNIQKQAEEYAALIMEELDPDHLGCIMIDNLEMLLLQ 315 (811)
Q Consensus 243 e~l~~~F~~fD-kD~dG-~It~eE~~~il~~~~~~~~l~~~~~~~~e~~~~i~~e~D~d~dG~Is~eEF~~~l~~ 315 (811)
..+..+|+.|| +|+|| +||.+||++++...... .+.. ...++.++.+|+++|.|+||.|+|+||..+|..
T Consensus 10 ~~~~~~F~~~dd~dgdg~~Is~~EL~~ll~~~~~~-~~~~--~~~~~~v~~i~~elD~n~dG~Idf~EF~~l~~~ 81 (93)
T cd05026 10 DTLIRIFHNYSGKEGDRYKLSKGELKELLQRELTD-FLSS--QKDPMLVDKIMNDLDSNKDNEVDFNEFVVLVAA 81 (93)
T ss_pred HHHHHHHHHHHccCCCCCEECHHHHHHHHHHHhHH-hccc--ccCHHHHHHHHHHhCCCCCCCCCHHHHHHHHHH
Confidence 35778899999 89999 59999999999632211 1110 012345666999999999999999999999864
No 110
>KOG0036 consensus Predicted mitochondrial carrier protein [Nucleotide transport and metabolism]
Probab=98.58 E-value=1e-07 Score=103.11 Aligned_cols=164 Identities=15% Similarity=0.186 Sum_probs=121.1
Q ss_pred CCCccccCchhHHHHHhhhhhhhccCC-cccHHHHHHHHHhHccCCCCceehhhhcccccCCCCCHHHHHHHHHHHHccC
Q 003558 139 PPARFDRNKSAAAYALKGLKFISKTDG-GAGWANVEKRFDEITASTNGVLPRARFGECIGMNKDSKDFAVELFDALTRRR 217 (811)
Q Consensus 139 ~~~~~dr~~s~a~~alk~l~~i~~~~~-~~~~~~l~~~F~~lD~d~dG~Is~~ef~~~lg~~~~~~~~~~~lf~~l~d~d 217 (811)
.|+.||.++.|..+.-+.-+-+.+... .-.-+..+..|..+|.|.||.++.+||...+..++ ..+.++|+. .|.+
T Consensus 19 lf~~lD~~~~g~~d~~~l~k~~~~l~~~~~~~~~~~~l~~~~d~~~dg~vDy~eF~~Y~~~~E---~~l~~~F~~-iD~~ 94 (463)
T KOG0036|consen 19 LFKELDSKNDGQVDLDQLEKGLEKLDHPKPNYEAAKMLFSAMDANRDGRVDYSEFKRYLDNKE---LELYRIFQS-IDLE 94 (463)
T ss_pred HHHHhccCCCCceeHHHHHHHHHhcCCCCCchHHHHHHHHhcccCcCCcccHHHHHHHHHHhH---HHHHHHHhh-hccc
Confidence 346789888887654433333333322 34557789999999999999999999999886654 345667776 4555
Q ss_pred CCCCCceeHHHHHHHHHHhccCChHHHHHHHhhhhcCCCCCceeHHHHHHHHHhhhccCCCcchHHHHHHHHHHH--HHH
Q 003558 218 NIQGDTITKDQLREFWDQISDQSFDSRLQTFFDMVDKDADGRITEDEVREIISLSASANKLSNIQKQAEEYAALI--MEE 295 (811)
Q Consensus 218 ~~~~G~I~~~EF~~~~~~l~~~~~~e~l~~~F~~fDkD~dG~It~eE~~~il~~~~~~~~l~~~~~~~~e~~~~i--~~e 295 (811)
. ||.|+.+|....+..++.+..+++++.+|+..|+||++.|+.+|+++.+.+.. ++.+++..+.. +.-
T Consensus 95 h--dG~i~~~Ei~~~l~~~gi~l~de~~~k~~e~~d~~g~~~I~~~e~rd~~ll~p--------~s~i~di~~~W~h~~~ 164 (463)
T KOG0036|consen 95 H--DGKIDPNEIWRYLKDLGIQLSDEKAAKFFEHMDKDGKATIDLEEWRDHLLLYP--------ESDLEDIYDFWRHVLL 164 (463)
T ss_pred c--CCccCHHHHHHHHHHhCCccCHHHHHHHHHHhccCCCeeeccHHHHhhhhcCC--------hhHHHHHHHhhhhheE
Confidence 5 99999999999999999999999999999999999999999999999986432 22233332211 113
Q ss_pred cCCCCCCcccHHHHHHHHHhCC
Q 003558 296 LDPDHLGCIMIDNLEMLLLQAP 317 (811)
Q Consensus 296 ~D~d~dG~Is~eEF~~~l~~~p 317 (811)
+|...|..|. |+|....++.-
T Consensus 165 idigE~~~iP-dg~s~~e~~~g 185 (463)
T KOG0036|consen 165 IDIGEDAVLP-DGDSKLENDSG 185 (463)
T ss_pred EEccccccCC-cchHHHHhccc
Confidence 6888888888 77777665543
No 111
>KOG0044 consensus Ca2+ sensor (EF-Hand superfamily) [Signal transduction mechanisms]
Probab=98.58 E-value=2.1e-07 Score=93.67 Aligned_cols=106 Identities=19% Similarity=0.206 Sum_probs=85.5
Q ss_pred CHHHHHHHHHHHHccCCCCCCceeHHHHHHHHHHhcc-CChHHHHHHHhhhhcCCCCCceeHHHHHHHHHhhhccCCCcc
Q 003558 202 SKDFAVELFDALTRRRNIQGDTITKDQLREFWDQISD-QSFDSRLQTFFDMVDKDADGRITEDEVREIISLSASANKLSN 280 (811)
Q Consensus 202 ~~~~~~~lf~~l~d~d~~~~G~I~~~EF~~~~~~l~~-~~~~e~l~~~F~~fDkD~dG~It~eE~~~il~~~~~~~~l~~ 280 (811)
++.++++++..+...-. +|.++.++|..++..+.. ++...-.+.+|+.||+|+||.|+++||...+.....+.
T Consensus 24 ~~~ei~~~Yr~Fk~~cP--~G~~~~~~F~~i~~~~fp~gd~~~y~~~vF~~fD~~~dg~i~F~Efi~als~~~rGt---- 97 (193)
T KOG0044|consen 24 SKKEIQQWYRGFKNECP--SGRLTLEEFREIYASFFPDGDASKYAELVFRTFDKNKDGTIDFLEFICALSLTSRGT---- 97 (193)
T ss_pred CHHHHHHHHHHhcccCC--CCccCHHHHHHHHHHHCCCCCHHHHHHHHHHHhcccCCCCcCHHHHHHHHHHHcCCc----
Confidence 56778888887554334 799999999999998864 67778889999999999999999999887776443332
Q ss_pred hHHHHHHHHHHHHHHcCCCCCCcccHHHHHHHHHhCC
Q 003558 281 IQKQAEEYAALIMEELDPDHLGCIMIDNLEMLLLQAP 317 (811)
Q Consensus 281 ~~~~~~e~~~~i~~e~D~d~dG~Is~eEF~~~l~~~p 317 (811)
+++..+-.|+-.|.|+||+|+++|+..+++..-
T Consensus 98 ----~eekl~w~F~lyD~dgdG~It~~Eml~iv~~i~ 130 (193)
T KOG0044|consen 98 ----LEEKLKWAFRLYDLDGDGYITKEEMLKIVQAIY 130 (193)
T ss_pred ----HHHHhhhhheeecCCCCceEcHHHHHHHHHHHH
Confidence 334444579999999999999999999887553
No 112
>cd05027 S-100B S-100B: S-100B domain found in proteins similar to S100B. S100B is a calcium-binding protein belonging to a large S100 vertebrate-specific protein family within the EF-hand superfamily of calcium-binding proteins. Note that the S-100 hierarchy, to which this S-100B group belongs, contains only S-100 EF-hand domains, other EF-hands have been modeled separately. S100B is most abundant in glial cells of the central nervous system, predominately in astrocytes. S100B is involved in signal transduction via the inhibition of protein phoshorylation, regulation of enzyme activity and by affecting the calcium homeostasis. Upon calcium binding the S100B homodimer changes conformation to expose a hydrophobic cleft, which represents the interaction site of S100B with its more than 20 known target proteins. These target proteins include several cellular architecture proteins such as tubulin and GFAP; S100B can inhibit polymerization of these oligomeric molecules. Furthermore, S100B i
Probab=98.58 E-value=1.1e-07 Score=84.34 Aligned_cols=67 Identities=21% Similarity=0.310 Sum_probs=52.4
Q ss_pred HHHHHHhhhhc-CCCCC-ceeHHHHHHHHHhhhc---cCCCcchHHHHHHHHHHHHHHcCCCCCCcccHHHHHHHHHh
Q 003558 243 SRLQTFFDMVD-KDADG-RITEDEVREIISLSAS---ANKLSNIQKQAEEYAALIMEELDPDHLGCIMIDNLEMLLLQ 315 (811)
Q Consensus 243 e~l~~~F~~fD-kD~dG-~It~eE~~~il~~~~~---~~~l~~~~~~~~e~~~~i~~e~D~d~dG~Is~eEF~~~l~~ 315 (811)
..+..+|+.|| +|+|| +|+.+||+.+|+.... +...+ ++.++.+|+++|.|+||.|+|+||..++..
T Consensus 8 ~~l~~aF~~fD~~dgdG~~I~~~eL~~ll~~~~~~~lg~~~~------~~~v~~~i~~~D~n~dG~v~f~eF~~li~~ 79 (88)
T cd05027 8 VALIDVFHQYSGREGDKHKLKKSELKELINNELSHFLEEIKE------QEVVDKVMETLDSDGDGECDFQEFMAFVAM 79 (88)
T ss_pred HHHHHHHHHhcccCCCcCEECHHHHHHHHHHHhHHHhcCCCC------HHHHHHHHHHhCCCCCCcCcHHHHHHHHHH
Confidence 45889999998 89999 6999999999974111 11111 234666999999999999999999998864
No 113
>KOG0034 consensus Ca2+/calmodulin-dependent protein phosphatase (calcineurin subunit B), EF-Hand superfamily protein [Signal transduction mechanisms]
Probab=98.57 E-value=1.1e-07 Score=95.52 Aligned_cols=137 Identities=17% Similarity=0.248 Sum_probs=95.7
Q ss_pred Hhhh-HHHHHhhhccCCCCCCCccccC-chhHHHHHhhhhhhhccCCcccHHHHHHHHHhHccCCCCc-eehhhhccccc
Q 003558 121 RQVS-QELKRLASFAKKPQPPARFDRN-KSAAAYALKGLKFISKTDGGAGWANVEKRFDEITASTNGV-LPRARFGECIG 197 (811)
Q Consensus 121 ~~~s-~~lk~~~~~~~~~~~~~~~dr~-~s~a~~alk~l~~i~~~~~~~~~~~l~~~F~~lD~d~dG~-Is~~ef~~~lg 197 (811)
.+|| +++.++- ..|.++++. .+|.++.-+.+..... ..+ .-..++|+.++++++|. |++++|...+.
T Consensus 25 ~~fs~~EI~~L~------~rF~kl~~~~~~g~lt~eef~~i~~~-~~N---p~~~rI~~~f~~~~~~~~v~F~~Fv~~ls 94 (187)
T KOG0034|consen 25 TQFSANEIERLY------ERFKKLDRNNGDGYLTKEEFLSIPEL-ALN---PLADRIIDRFDTDGNGDPVDFEEFVRLLS 94 (187)
T ss_pred cccCHHHHHHHH------HHHHHhccccccCccCHHHHHHHHHH-hcC---cHHHHHHHHHhccCCCCccCHHHHHHHHh
Confidence 4455 5665555 345677777 7766666666555522 111 23566677777777777 99999999884
Q ss_pred C---CCCCHHHHHHHHHHHHccCCCCCCceeHHHHHHHHHHhccC-Ch------HHHHHHHhhhhcCCCCCceeHHHHHH
Q 003558 198 M---NKDSKDFAVELFDALTRRRNIQGDTITKDQLREFWDQISDQ-SF------DSRLQTFFDMVDKDADGRITEDEVRE 267 (811)
Q Consensus 198 ~---~~~~~~~~~~lf~~l~d~d~~~~G~I~~~EF~~~~~~l~~~-~~------~e~l~~~F~~fDkD~dG~It~eE~~~ 267 (811)
. +...++.++=.|+ +.|.++ +|.|+.+|+..++..+... .. ++-+...|..+|.|+||+|+++|+.+
T Consensus 95 ~f~~~~~~~~Kl~faF~-vYD~~~--~G~I~reel~~iv~~~~~~~~~~~~e~~~~i~d~t~~e~D~d~DG~IsfeEf~~ 171 (187)
T KOG0034|consen 95 VFSPKASKREKLRFAFR-VYDLDG--DGFISREELKQILRMMVGENDDMSDEQLEDIVDKTFEEADTDGDGKISFEEFCK 171 (187)
T ss_pred hhcCCccHHHHHHHHHH-HhcCCC--CCcCcHHHHHHHHHHHHccCCcchHHHHHHHHHHHHHHhCCCCCCcCcHHHHHH
Confidence 2 2202224555688 578877 9999999999999987542 22 23456779999999999999999999
Q ss_pred HHH
Q 003558 268 IIS 270 (811)
Q Consensus 268 il~ 270 (811)
++.
T Consensus 172 ~v~ 174 (187)
T KOG0034|consen 172 VVE 174 (187)
T ss_pred HHH
Confidence 985
No 114
>PF13499 EF-hand_7: EF-hand domain pair; PDB: 1TCF_A 2TN4_A 1TN4_A 1A2X_A 2CT9_B 2OTG_B 2OS8_B 1SNL_A 3O4Y_A 3J04_E ....
Probab=98.48 E-value=3.4e-07 Score=76.26 Aligned_cols=61 Identities=26% Similarity=0.428 Sum_probs=48.7
Q ss_pred HHHHHHHHHccCCCCCCceeHHHHHHHHHHhccC----ChHHHHHHHhhhhcCCCCCceeHHHHHHHH
Q 003558 206 AVELFDALTRRRNIQGDTITKDQLREFWDQISDQ----SFDSRLQTFFDMVDKDADGRITEDEVREII 269 (811)
Q Consensus 206 ~~~lf~~l~d~d~~~~G~I~~~EF~~~~~~l~~~----~~~e~l~~~F~~fDkD~dG~It~eE~~~il 269 (811)
++++|+. .|.++ +|.|+.+||..++..+... ..++.++.+|+.+|+|+||.|+.+||.+++
T Consensus 2 l~~~F~~-~D~d~--~G~i~~~el~~~~~~~~~~~~~~~~~~~~~~~~~~~D~d~dG~i~~~Ef~~~~ 66 (66)
T PF13499_consen 2 LKEAFKK-FDKDG--DGYISKEELRRALKHLGRDMSDEESDEMIDQIFREFDTDGDGRISFDEFLNFM 66 (66)
T ss_dssp HHHHHHH-HSTTS--SSEEEHHHHHHHHHHTTSHSTHHHHHHHHHHHHHHHTTTSSSSEEHHHHHHHH
T ss_pred HHHHHHH-HcCCc--cCCCCHHHHHHHHHHhcccccHHHHHHHHHHHHHHhCCCCcCCCcHHHHhccC
Confidence 4677884 67776 8888888888888887643 345667778999999999999999998875
No 115
>cd05025 S-100A1 S-100A1: S-100A1 domain found in proteins similar to S100A1. S100A1 is a calcium-binding protein belonging to a large S100 vertebrate-specific protein family within the EF-hand superfamily of calcium-binding proteins. Note that the S-100 hierarchy, to which this S-100A1 group belongs, contains only S-100 EF-hand domains, other EF-hands have been modeled separately. As is the case with many other members of S100 protein family, S100A1 is implicated in intracellular and extracellular regulatory activities, including interaction with myosin-associated twitchin kinase, actin-capping protein CapZ, sinapsin I, and tubulin. Structural data suggests that S100A1 proteins exist within cells as antiparallel homodimers, while heterodimers with S100A4 and S100B also has been reported. Upon binding calcium S100A1 changes conformation to expose a hydrophobic cleft which is the interaction site of S100A1 with its more that 20 known target proteins.
Probab=98.47 E-value=4.8e-07 Score=80.87 Aligned_cols=71 Identities=20% Similarity=0.341 Sum_probs=53.5
Q ss_pred HHHHHHHhhhhc-CCCCC-ceeHHHHHHHHHhhhccCCCcchHHHHHHHHHHHHHHcCCCCCCcccHHHHHHHHHh
Q 003558 242 DSRLQTFFDMVD-KDADG-RITEDEVREIISLSASANKLSNIQKQAEEYAALIMEELDPDHLGCIMIDNLEMLLLQ 315 (811)
Q Consensus 242 ~e~l~~~F~~fD-kD~dG-~It~eE~~~il~~~~~~~~l~~~~~~~~e~~~~i~~e~D~d~dG~Is~eEF~~~l~~ 315 (811)
.+.++.+|+.|| +|++| .|+.+||+.++...... .+.. ...++.++.+|+++|.|++|.|+|+||..++..
T Consensus 8 ~~~l~~~F~~fDd~dg~G~~Is~~El~~~l~~~lg~-~~~~--~~s~~~v~~i~~~~D~d~~G~I~f~eF~~l~~~ 80 (92)
T cd05025 8 METLINVFHAHSGKEGDKYKLSKKELKDLLQTELSD-FLDA--QKDADAVDKIMKELDENGDGEVDFQEFVVLVAA 80 (92)
T ss_pred HHHHHHHHHHHhcccCCCCeECHHHHHHHHHHHHHH-HccC--CCCHHHHHHHHHHHCCCCCCcCcHHHHHHHHHH
Confidence 367899999997 99999 59999999999631110 0100 011344666999999999999999999998874
No 116
>cd05031 S-100A10_like S-100A10_like: S-100A10 domain found in proteins similar to S100A10. S100A10 is a member of the S100 family of EF-hand superfamily of calcium-binding proteins. Note that the S-100 hierarchy, to which this S-100A1_like group belongs, contains only S-100 EF-hand domains, other EF-hands have been modeled separately. S100 proteins are expressed exclusively in vertebrates, and are implicated in intracellular and extracellular regulatory activities. A unique feature of S100A10 is that it contains mutation in both of the calcium binding sites, making it calcium insensitive. S100A10 has been detected in brain, heart, gastrointestinal tract, kidney, liver, lung, spleen, testes, epidermis, aorta, and thymus. Structural data supports the homo- and hetero-dimeric as well as hetero-tetrameric nature of the protein. S100A10 has multiple binding partners in its calcium free state and is therefore involved in many diverse biological functions.
Probab=98.43 E-value=4.4e-07 Score=81.48 Aligned_cols=71 Identities=17% Similarity=0.215 Sum_probs=53.8
Q ss_pred HHHHHHHhhhhcC-CC-CCceeHHHHHHHHHhhhcc-CCCcchHHHHHHHHHHHHHHcCCCCCCcccHHHHHHHHHhC
Q 003558 242 DSRLQTFFDMVDK-DA-DGRITEDEVREIISLSASA-NKLSNIQKQAEEYAALIMEELDPDHLGCIMIDNLEMLLLQA 316 (811)
Q Consensus 242 ~e~l~~~F~~fDk-D~-dG~It~eE~~~il~~~~~~-~~l~~~~~~~~e~~~~i~~e~D~d~dG~Is~eEF~~~l~~~ 316 (811)
...++.+|+.||. |+ ||+|+.+||+.++...... .... ..++.++.+++++|.|++|.|+|+||+.+|...
T Consensus 7 ~~~l~~~F~~~D~~dg~dG~Is~~El~~~l~~~~g~~lg~~----~s~~ei~~~~~~~D~~~dg~I~f~eF~~l~~~~ 80 (94)
T cd05031 7 MESLILTFHRYAGKDGDKNTLSRKELKKLMEKELSEFLKNQ----KDPMAVDKIMKDLDQNRDGKVNFEEFVSLVAGL 80 (94)
T ss_pred HHHHHHHHHHHhccCCCCCeECHHHHHHHHHHHhHHHhhcc----ccHHHHHHHHHHhCCCCCCcCcHHHHHHHHHHH
Confidence 3568899999997 97 7999999999999632110 0111 123456669999999999999999999998744
No 117
>cd00252 SPARC_EC SPARC_EC; extracellular Ca2+ binding domain (containing 2 EF-hand motifs) of SPARC and related proteins (QR1, SC1/hevin, testican and tsc-36/FRP). SPARC (BM-40) is a multifunctional glycoprotein, a matricellular protein, that functions to regulate cell-matrix interactions; binds to such proteins as collagen and vitronectin and binds to endothelial cells thus inhibiting cellular proliferation. The EC domain interacts with a follistatin-like (FS) domain which appears to stabilize Ca2+ binding. The two EF-hands interact canonically but their conserved disulfide bonds confer a tight association between the EF-hand pair and an acid/amphiphilic N-terminal helix. Proposed active form involves a Ca2+ dependent symmetric homodimerization of EC-FS modules.
Probab=98.40 E-value=5.9e-07 Score=83.59 Aligned_cols=66 Identities=20% Similarity=0.281 Sum_probs=53.6
Q ss_pred hHHHHHHHhhhhcCCCCCceeHHHHHHHHHhhhccCCCcchHHHHHHHHHHHHHHcCCCCCCcccHHHHHHHHHhCCcc
Q 003558 241 FDSRLQTFFDMVDKDADGRITEDEVREIISLSASANKLSNIQKQAEEYAALIMEELDPDHLGCIMIDNLEMLLLQAPAQ 319 (811)
Q Consensus 241 ~~e~l~~~F~~fDkD~dG~It~eE~~~il~~~~~~~~l~~~~~~~~e~~~~i~~e~D~d~dG~Is~eEF~~~l~~~p~~ 319 (811)
..+++..+|..+|+|+||+||.+|+..+.. . ..+..++.+|+.+|.|+||+||++||+..+ ..++.
T Consensus 46 ~~~~l~w~F~~lD~d~DG~Ls~~EL~~~~l-~-----------~~e~~~~~f~~~~D~n~Dg~IS~~Ef~~cl-~~~~~ 111 (116)
T cd00252 46 CKDPVGWMFNQLDGNYDGKLSHHELAPIRL-D-----------PNEHCIKPFFESCDLDKDGSISLDEWCYCF-IKEDD 111 (116)
T ss_pred HHHHHHHHHHHHCCCCCCcCCHHHHHHHHc-c-----------chHHHHHHHHHHHCCCCCCCCCHHHHHHHH-hChhh
Confidence 456799999999999999999999998751 1 113445669999999999999999999999 44443
No 118
>cd05023 S-100A11 S-100A11: S-100A11 domain found in proteins similar to S100A11. S100A11 is a member of the S-100 domain family within EF-hand Ca2+-binding proteins superfamily. Note that the S-100 hierarchy, to which this S-100A11 group belongs, contains only S-100 EF-hand domains, other EF-hands have been modeled separately. S100 proteins exhibit unique patterns of tissue- and cell type-specific expression and have been implicated in the Ca2+-dependent regulation of diverse physiological processes, including cell cycle regulation, differentiation, growth, and metabolic control . S100 proteins have also been associated with a variety of pathological events, including neoplastic transformation and neurodegenerative diseases such as Alzheimer's, usually via over expression of the protein. S100A11 is expressed in smooth muscle and other tissues and involves in calcium-dependent membrane aggregation, which is important for cell vesiculation . As is the case for many other S100 proteins, S
Probab=98.38 E-value=1.1e-06 Score=78.02 Aligned_cols=70 Identities=16% Similarity=0.229 Sum_probs=52.2
Q ss_pred HHHHHHhhh-hcCCCCC-ceeHHHHHHHHHhhhccCCCcchHHHHHHHHHHHHHHcCCCCCCcccHHHHHHHHHh
Q 003558 243 SRLQTFFDM-VDKDADG-RITEDEVREIISLSASANKLSNIQKQAEEYAALIMEELDPDHLGCIMIDNLEMLLLQ 315 (811)
Q Consensus 243 e~l~~~F~~-fDkD~dG-~It~eE~~~il~~~~~~~~l~~~~~~~~e~~~~i~~e~D~d~dG~Is~eEF~~~l~~ 315 (811)
+.+..+|+. +|+|++| .|+.+||+.++....... +. ....++.++.+|+++|.|+||.|+|+||..+|..
T Consensus 9 ~~l~~~F~~y~~~dg~~~~Ls~~Elk~ll~~e~~~~-~~--~~~~~~~~~~ll~~~D~d~DG~I~f~EF~~l~~~ 80 (89)
T cd05023 9 ESLIAVFQKYAGKDGDSYQLSKTEFLSFMNTELASF-TK--NQKDPGVLDRMMKKLDLNSDGQLDFQEFLNLIGG 80 (89)
T ss_pred HHHHHHHHHHhccCCCcCeECHHHHHHHHHHhhhHh-hc--CCCCHHHHHHHHHHcCCCCCCcCcHHHHHHHHHH
Confidence 457888998 8899987 999999999997332110 00 0011345666999999999999999999998864
No 119
>smart00027 EH Eps15 homology domain. Pair of EF hand motifs that recognise proteins containing Asn-Pro-Phe (NPF) sequences.
Probab=98.36 E-value=1.5e-06 Score=78.38 Aligned_cols=65 Identities=25% Similarity=0.341 Sum_probs=53.8
Q ss_pred HHHHHHHhhhhcCCCCCceeHHHHHHHHHhhhccCCCcchHHHHHHHHHHHHHHcCCCCCCcccHHHHHHHHHhC
Q 003558 242 DSRLQTFFDMVDKDADGRITEDEVREIISLSASANKLSNIQKQAEEYAALIMEELDPDHLGCIMIDNLEMLLLQA 316 (811)
Q Consensus 242 ~e~l~~~F~~fDkD~dG~It~eE~~~il~~~~~~~~l~~~~~~~~e~~~~i~~e~D~d~dG~Is~eEF~~~l~~~ 316 (811)
.++++.+|+.||+|++|.|+.+|+++++... ..+ + +.++.++..+|.+++|+|+|+||+.+|...
T Consensus 9 ~~~l~~~F~~~D~d~~G~Is~~el~~~l~~~----~~~--~----~ev~~i~~~~d~~~~g~I~~~eF~~~~~~~ 73 (96)
T smart00027 9 KAKYEQIFRSLDKNQDGTVTGAQAKPILLKS----GLP--Q----TLLAKIWNLADIDNDGELDKDEFALAMHLI 73 (96)
T ss_pred HHHHHHHHHHhCCCCCCeEeHHHHHHHHHHc----CCC--H----HHHHHHHHHhcCCCCCCcCHHHHHHHHHHH
Confidence 4578999999999999999999999999731 122 2 345568999999999999999999988754
No 120
>PLN02964 phosphatidylserine decarboxylase
Probab=98.35 E-value=1.6e-06 Score=101.87 Aligned_cols=99 Identities=22% Similarity=0.341 Sum_probs=75.0
Q ss_pred HHHHHHHHHHHccCCCCCCceeHHHHHHHHHHhcc-CChHHH---HHHHhhhhcCCCCCceeHHHHHHHHHhhhccCCCc
Q 003558 204 DFAVELFDALTRRRNIQGDTITKDQLREFWDQISD-QSFDSR---LQTFFDMVDKDADGRITEDEVREIISLSASANKLS 279 (811)
Q Consensus 204 ~~~~~lf~~l~d~d~~~~G~I~~~EF~~~~~~l~~-~~~~e~---l~~~F~~fDkD~dG~It~eE~~~il~~~~~~~~l~ 279 (811)
+.+.+.|+ +.|.|+ +|.| +..++..++. ...+++ ++.+|+.+|.|+||.|+++||..++.... ...
T Consensus 143 ~elkeaF~-lfD~dg--dG~i----Lg~ilrslG~~~pte~e~~fi~~mf~~~D~DgdG~IdfdEFl~lL~~lg--~~~- 212 (644)
T PLN02964 143 ESACESFD-LLDPSS--SNKV----VGSIFVSCSIEDPVETERSFARRILAIVDYDEDGQLSFSEFSDLIKAFG--NLV- 212 (644)
T ss_pred HHHHHHHH-HHCCCC--CCcC----HHHHHHHhCCCCCCHHHHHHHHHHHHHhCCCCCCeEcHHHHHHHHHHhc--cCC-
Confidence 44566788 477776 8886 6666666662 333333 89999999999999999999999997322 111
Q ss_pred chHHHHHHHHHHHHHHcCCCCCCcccHHHHHHHHHhCC
Q 003558 280 NIQKQAEEYAALIMEELDPDHLGCIMIDNLEMLLLQAP 317 (811)
Q Consensus 280 ~~~~~~~e~~~~i~~e~D~d~dG~Is~eEF~~~l~~~p 317 (811)
.++.+..+|+.+|.|+||+|+++||..+|...+
T Consensus 213 -----seEEL~eaFk~fDkDgdG~Is~dEL~~vL~~~~ 245 (644)
T PLN02964 213 -----AANKKEELFKAADLNGDGVVTIDELAALLALQQ 245 (644)
T ss_pred -----CHHHHHHHHHHhCCCCCCcCCHHHHHHHHHhcc
Confidence 133466699999999999999999999998765
No 121
>KOG2562 consensus Protein phosphatase 2 regulatory subunit [RNA processing and modification]
Probab=98.34 E-value=1e-06 Score=96.92 Aligned_cols=138 Identities=15% Similarity=0.219 Sum_probs=105.6
Q ss_pred HHHHHHHHhHccCCCCceehhhhcccccCCCCCHHHHHHHHHHHHccCC-CCCCceeHHHHHHHHHHhccCChHHHHHHH
Q 003558 170 ANVEKRFDEITASTNGVLPRARFGECIGMNKDSKDFAVELFDALTRRRN-IQGDTITKDQLREFWDQISDQSFDSRLQTF 248 (811)
Q Consensus 170 ~~l~~~F~~lD~d~dG~Is~~ef~~~lg~~~~~~~~~~~lf~~l~d~d~-~~~G~I~~~EF~~~~~~l~~~~~~e~l~~~ 248 (811)
..+...|-.+|+|.||.|+.++++..-.-.. +.-+++++|+...+..- ..+|.++|++|+.++..+-+.....-++..
T Consensus 278 ~viy~kFweLD~Dhd~lidk~~L~ry~d~tl-t~~ivdRIFs~v~r~~~~~~eGrmdykdFv~FilA~e~k~t~~SleYw 356 (493)
T KOG2562|consen 278 YVIYCKFWELDTDHDGLIDKEDLKRYGDHTL-TERIVDRIFSQVPRGFTVKVEGRMDYKDFVDFILAEEDKDTPASLEYW 356 (493)
T ss_pred HHHHHHHhhhccccccccCHHHHHHHhccch-hhHHHHHHHhhccccceeeecCcccHHHHHHHHHHhccCCCccchhhh
Confidence 4455669999999999999999987654344 56789999994322111 136899999999999999888888889999
Q ss_pred hhhhcCCCCCceeHHHHHHHHHhhh----ccCCCcchHHHHHHHHHHHHHHcCCCCCCcccHHHHHH
Q 003558 249 FDMVDKDADGRITEDEVREIISLSA----SANKLSNIQKQAEEYAALIMEELDPDHLGCIMIDNLEM 311 (811)
Q Consensus 249 F~~fDkD~dG~It~eE~~~il~~~~----~~~~l~~~~~~~~e~~~~i~~e~D~d~dG~Is~eEF~~ 311 (811)
|+..|.|+||.++.+|++-+..... .....+ -..++...+|+..+.+.+.++|+++||..
T Consensus 357 FrclDld~~G~Lt~~el~~fyeeq~~rm~~~~~e~---l~fed~l~qi~DMvkP~~~~kItLqDlk~ 420 (493)
T KOG2562|consen 357 FRCLDLDGDGILTLNELRYFYEEQLQRMECMGQEA---LPFEDALCQIRDMVKPEDENKITLQDLKG 420 (493)
T ss_pred eeeeeccCCCcccHHHHHHHHHHHHHHHHhcCCCc---ccHHHHHHHHHHHhCccCCCceeHHHHhh
Confidence 9999999999999999987664211 111111 12356667788888999999999999987
No 122
>cd00052 EH Eps15 homology domain; found in proteins implicated in endocytosis, vesicle transport, and signal transduction. The alignment contains a pair of EF-hand motifs, typically one of them is canonical and binds to Ca2+, while the other may not bind to Ca2+. A hydrophobic binding pocket is formed by residues from both EF-hand motifs. The EH domain binds to proteins containing NPF (class I), [WF]W or SWG (class II), or H[TS]F (class III) sequence motifs.
Probab=98.33 E-value=1.2e-06 Score=72.80 Aligned_cols=61 Identities=26% Similarity=0.363 Sum_probs=50.3
Q ss_pred HHHhhhhcCCCCCceeHHHHHHHHHhhhccCCCcchHHHHHHHHHHHHHHcCCCCCCcccHHHHHHHHHhC
Q 003558 246 QTFFDMVDKDADGRITEDEVREIISLSASANKLSNIQKQAEEYAALIMEELDPDHLGCIMIDNLEMLLLQA 316 (811)
Q Consensus 246 ~~~F~~fDkD~dG~It~eE~~~il~~~~~~~~l~~~~~~~~e~~~~i~~e~D~d~dG~Is~eEF~~~l~~~ 316 (811)
+.+|+.+|+|++|.|+.+|++.++... ..+ ++.++.+++.+|.|++|.|+++||..+|...
T Consensus 2 ~~~F~~~D~~~~G~i~~~el~~~l~~~----g~~------~~~~~~i~~~~d~~~~g~i~~~ef~~~~~~~ 62 (67)
T cd00052 2 DQIFRSLDPDGDGLISGDEARPFLGKS----GLP------RSVLAQIWDLADTDKDGKLDKEEFAIAMHLI 62 (67)
T ss_pred hHHHHHhCCCCCCcCcHHHHHHHHHHc----CCC------HHHHHHHHHHhcCCCCCcCCHHHHHHHHHHH
Confidence 578999999999999999999998632 111 2345668999999999999999999988754
No 123
>cd00213 S-100 S-100: S-100 domain, which represents the largest family within the superfamily of proteins carrying the Ca-binding EF-hand motif. Note that this S-100 hierarchy contains only S-100 EF-hand domains, other EF-hands have been modeled separately. S100 proteins are expressed exclusively in vertebrates, and are implicated in intracellular and extracellular regulatory activities. Intracellularly, S100 proteins act as Ca-signaling or Ca-buffering proteins. The most unusual characteristic of certain S100 proteins is their occurrence in extracellular space, where they act in a cytokine-like manner through RAGE, the receptor for advanced glycation products. Structural data suggest that many S100 members exist within cells as homo- or heterodimers and even oligomers; oligomerization contributes to their functional diversification. Upon binding calcium, most S100 proteins change conformation to a more open structure exposing a hydrophobic cleft. This hydrophobic surface represents th
Probab=98.32 E-value=1.7e-06 Score=76.49 Aligned_cols=72 Identities=17% Similarity=0.270 Sum_probs=54.5
Q ss_pred HHHHHHHhhhhcC--CCCCceeHHHHHHHHHhhhccCCCcchHHHHHHHHHHHHHHcCCCCCCcccHHHHHHHHHhC
Q 003558 242 DSRLQTFFDMVDK--DADGRITEDEVREIISLSASANKLSNIQKQAEEYAALIMEELDPDHLGCIMIDNLEMLLLQA 316 (811)
Q Consensus 242 ~e~l~~~F~~fDk--D~dG~It~eE~~~il~~~~~~~~l~~~~~~~~e~~~~i~~e~D~d~dG~Is~eEF~~~l~~~ 316 (811)
.+.++.+|..||+ |++|.|+.+||+.++..... ...+ ....++.++.++.++|.|++|.|+|+||..+|...
T Consensus 7 ~~~l~~~F~~~D~~~~~~G~Is~~el~~~l~~~~g-~~~~--~~~~~~ei~~i~~~~d~~~~g~I~f~eF~~~~~~~ 80 (88)
T cd00213 7 IETIIDVFHKYSGKEGDKDTLSKKELKELLETELP-NFLK--NQKDPEAVDKIMKDLDVNKDGKVDFQEFLVLIGKL 80 (88)
T ss_pred HHHHHHHHHHHhhccCCCCcCcHHHHHHHHHHHhh-hhcc--CCCCHHHHHHHHHHhccCCCCcCcHHHHHHHHHHH
Confidence 3568899999999 89999999999999963211 1110 00123456669999999999999999999988743
No 124
>cd05029 S-100A6 S-100A6: S-100A6 domain found in proteins similar to S100A6. S100A6 is a member of the S100 domain family within EF-hand Ca2+-binding proteins superfamily. Note that the S-100 hierarchy, to which this S-100A6 group belongs, contains only S-100 EF-hand domains, other EF-hands have been modeled separately. S100 proteins exhibit unique patterns of tissue- and cell type-specific expression and have been implicated in the Ca2+-dependent regulation of diverse physiological processes, including cell cycle regulation, differentiation, growth, and metabolic control . S100A6 is normally expressed in the G1 phase of the cell cycle in neuronal cells. The function of S100A6 remains unclear, but evidence suggests that it is involved in cell cycle regulation and exocytosis. S100A6 may also be involved in tumorigenesis; the protein is overexpressed in several tumors. Ca2+ binding to S100A6 leads to a conformational change in the protein, which exposes a hydrophobic surface for interact
Probab=98.32 E-value=8.7e-07 Score=78.53 Aligned_cols=66 Identities=20% Similarity=0.298 Sum_probs=51.0
Q ss_pred HHHHHhhhhcC-CC-CCceeHHHHHHHHHhh-hccCCCcchHHHHHHHHHHHHHHcCCCCCCcccHHHHHHHHHh
Q 003558 244 RLQTFFDMVDK-DA-DGRITEDEVREIISLS-ASANKLSNIQKQAEEYAALIMEELDPDHLGCIMIDNLEMLLLQ 315 (811)
Q Consensus 244 ~l~~~F~~fDk-D~-dG~It~eE~~~il~~~-~~~~~l~~~~~~~~e~~~~i~~e~D~d~dG~Is~eEF~~~l~~ 315 (811)
.+-.+|..||. |+ +|+|+.+||+++++.. .-+.+.+ ++.++.+|+++|.|++|.|+|+||..+|..
T Consensus 11 ~~i~~F~~y~~~~~~~g~Is~~EL~~~l~~~~~lg~k~t------~~ev~~m~~~~D~d~dG~Idf~EFv~lm~~ 79 (88)
T cd05029 11 LLVAIFHKYSGREGDKNTLSKKELKELIQKELTIGSKLQ------DAEIAKLMEDLDRNKDQEVNFQEYVTFLGA 79 (88)
T ss_pred HHHHHHHHHHccCCCCCEECHHHHHHHHHHHHhcCCCCC------HHHHHHHHHHhcCCCCCCCcHHHHHHHHHH
Confidence 35678999998 78 8999999999999621 1122222 334556899999999999999999998864
No 125
>KOG0031 consensus Myosin regulatory light chain, EF-Hand protein superfamily [Cytoskeleton]
Probab=98.29 E-value=4.3e-06 Score=79.46 Aligned_cols=139 Identities=17% Similarity=0.212 Sum_probs=118.3
Q ss_pred hhhhhhHhhh-HHHHHhhhccCCCCCCCccccCchhHHHHHhhhhhhhccCCcccHHHHHHHHHhHccCCCCceehhhhc
Q 003558 115 TASARIRQVS-QELKRLASFAKKPQPPARFDRNKSAAAYALKGLKFISKTDGGAGWANVEKRFDEITASTNGVLPRARFG 193 (811)
Q Consensus 115 ~~~~~~~~~s-~~lk~~~~~~~~~~~~~~~dr~~s~a~~alk~l~~i~~~~~~~~~~~l~~~F~~lD~d~dG~Is~~ef~ 193 (811)
++-+...|.. ||+|+++ ..+|.+++|.+..-.....+++.+....-++|..+++. ..|-|++.-|.
T Consensus 21 nvFamf~q~QIqEfKEAF---------~~mDqnrDG~IdkeDL~d~~aSlGk~~~d~elDaM~~E----a~gPINft~FL 87 (171)
T KOG0031|consen 21 NVFAMFDQSQIQEFKEAF---------NLMDQNRDGFIDKEDLRDMLASLGKIASDEELDAMMKE----APGPINFTVFL 87 (171)
T ss_pred hHHHHhhHHHHHHHHHHH---------HHHhccCCCcccHHHHHHHHHHcCCCCCHHHHHHHHHh----CCCCeeHHHHH
Confidence 5777777777 8998766 78999999999988887888888776677888888887 57999999998
Q ss_pred ccccCC----CCCHHHHHHHHHHHHccCCCCCCceeHHHHHHHHHHhccCChHHHHHHHhhhhcCCCCCceeHHHHHHHH
Q 003558 194 ECIGMN----KDSKDFAVELFDALTRRRNIQGDTITKDQLREFWDQISDQSFDSRLQTFFDMVDKDADGRITEDEVREII 269 (811)
Q Consensus 194 ~~lg~~----~~~~~~~~~lf~~l~d~d~~~~G~I~~~EF~~~~~~l~~~~~~e~l~~~F~~fDkD~dG~It~eE~~~il 269 (811)
.++|.+ + .++.+...|.. +|.++ .|.|+-+.+.+.+...++.-.++++..+|+.+-.|..|.|+..+|..+|
T Consensus 88 TmfGekL~gtd-pe~~I~~AF~~-FD~~~--~G~I~~d~lre~Ltt~gDr~~~eEV~~m~r~~p~d~~G~~dy~~~~~~i 163 (171)
T KOG0031|consen 88 TMFGEKLNGTD-PEEVILNAFKT-FDDEG--SGKIDEDYLRELLTTMGDRFTDEEVDEMYREAPIDKKGNFDYKAFTYII 163 (171)
T ss_pred HHHHHHhcCCC-HHHHHHHHHHh-cCccC--CCccCHHHHHHHHHHhcccCCHHHHHHHHHhCCcccCCceeHHHHHHHH
Confidence 888532 3 56667777885 66665 8999999999999999999999999999999999999999999999998
Q ss_pred H
Q 003558 270 S 270 (811)
Q Consensus 270 ~ 270 (811)
+
T Consensus 164 t 164 (171)
T KOG0031|consen 164 T 164 (171)
T ss_pred H
Confidence 6
No 126
>KOG4666 consensus Predicted phosphate acyltransferase, contains PlsC domain [Lipid transport and metabolism]
Probab=98.26 E-value=2e-06 Score=90.33 Aligned_cols=141 Identities=12% Similarity=0.084 Sum_probs=110.8
Q ss_pred cccHHHHHHHHHhHc----cCCCCceehhhhcccccCCCCCHHHHHHHHHHHHccCCCCCCceeHHHHHHHHHHhccC-C
Q 003558 166 GAGWANVEKRFDEIT----ASTNGVLPRARFGECIGMNKDSKDFAVELFDALTRRRNIQGDTITKDQLREFWDQISDQ-S 240 (811)
Q Consensus 166 ~~~~~~l~~~F~~lD----~d~dG~Is~~ef~~~lg~~~~~~~~~~~lf~~l~d~d~~~~G~I~~~EF~~~~~~l~~~-~ 240 (811)
...|..+.+..+.+. ..+.+.|-..||...+.... + ...+.+|. |+|+.+ +|.+||.|....+.-++.. .
T Consensus 219 kL~~~gl~k~ld~y~~var~~kg~~igi~efa~~l~vpv-s-d~l~~~f~-LFde~~--tg~~D~re~v~~lavlc~p~~ 293 (412)
T KOG4666|consen 219 KLPLVGLIKKLDGYVYVAREAKGPDIGIVEFAVNLRVPV-S-DKLAPTFM-LFDEGT--TGNGDYRETVKTLAVLCGPPV 293 (412)
T ss_pred CCChHHHHHHHhhHHHHHHhccCCCcceeEeeeeeecch-h-hhhhhhhh-eecCCC--CCcccHHHHhhhheeeeCCCC
Confidence 356666666555443 13577899999999887765 4 45677888 688877 9999999999888877654 5
Q ss_pred hHHHHHHHhhhhcCCCCCceeHHHHHHHHHhhhccCCCcchHHHHHHHHHHHHHHcCCCCCCcccHHHHHHHHHhCCccc
Q 003558 241 FDSRLQTFFDMVDKDADGRITEDEVREIISLSASANKLSNIQKQAEEYAALIMEELDPDHLGCIMIDNLEMLLLQAPAQS 320 (811)
Q Consensus 241 ~~e~l~~~F~~fDkD~dG~It~eE~~~il~~~~~~~~l~~~~~~~~e~~~~i~~e~D~d~dG~Is~eEF~~~l~~~p~~~ 320 (811)
..+-+|.+|++||.+.||.+..++|..+++....-..+.. -.+|.++|+..||+|+++||.+++..+|++.
T Consensus 294 t~~iiq~afk~f~v~eDg~~ge~~ls~ilq~~lgv~~l~v---------~~lf~~i~q~d~~ki~~~~f~~fa~~~p~~a 364 (412)
T KOG4666|consen 294 TPVIIQYAFKRFSVAEDGISGEHILSLILQVVLGVEVLRV---------PVLFPSIEQKDDPKIYASNFRKFAATEPNLA 364 (412)
T ss_pred cHHHHHHHHHhcccccccccchHHHHHHHHHhcCcceeec---------cccchhhhcccCcceeHHHHHHHHHhCchhh
Confidence 5788999999999999999999999999985433332221 2288889999999999999999999999875
No 127
>PF13833 EF-hand_8: EF-hand domain pair; PDB: 3KF9_A 1TTX_A 1WLZ_A 1ALV_A 1NX3_A 1ALW_A 1NX2_A 1NX1_A 1NX0_A 1DF0_A ....
Probab=98.15 E-value=5.4e-06 Score=66.19 Aligned_cols=50 Identities=22% Similarity=0.409 Sum_probs=45.8
Q ss_pred CCceeHHHHHHHHHHhccC-ChHHHHHHHhhhhcCCCCCceeHHHHHHHHH
Q 003558 221 GDTITKDQLREFWDQISDQ-SFDSRLQTFFDMVDKDADGRITEDEVREIIS 270 (811)
Q Consensus 221 ~G~I~~~EF~~~~~~l~~~-~~~e~l~~~F~~fDkD~dG~It~eE~~~il~ 270 (811)
+|.|+.+||..++..++.. ..++++..+|+.+|.|+||+|+++||..++.
T Consensus 2 ~G~i~~~~~~~~l~~~g~~~~s~~e~~~l~~~~D~~~~G~I~~~EF~~~~~ 52 (54)
T PF13833_consen 2 DGKITREEFRRALSKLGIKDLSEEEVDRLFREFDTDGDGYISFDEFISMMQ 52 (54)
T ss_dssp SSEEEHHHHHHHHHHTTSSSSCHHHHHHHHHHHTTSSSSSEEHHHHHHHHH
T ss_pred cCEECHHHHHHHHHHhCCCCCCHHHHHHHHHhcccCCCCCCCHHHHHHHHH
Confidence 7899999999999777766 7788899999999999999999999998875
No 128
>KOG2643 consensus Ca2+ binding protein, contains EF-hand motifs [Inorganic ion transport and metabolism]
Probab=98.15 E-value=1.1e-05 Score=88.13 Aligned_cols=158 Identities=16% Similarity=0.246 Sum_probs=103.4
Q ss_pred cccCchhHHHHHhhhhhhhccCCcccHHHHHHHHHhHccCCCCceehhhhcccc---------cC------CC-C--CHH
Q 003558 143 FDRNKSAAAYALKGLKFISKTDGGAGWANVEKRFDEITASTNGVLPRARFGECI---------GM------NK-D--SKD 204 (811)
Q Consensus 143 ~dr~~s~a~~alk~l~~i~~~~~~~~~~~l~~~F~~lD~d~dG~Is~~ef~~~l---------g~------~~-~--~~~ 204 (811)
++-.++|.++..+- .|+...++ ......+=.|+.+|.|+||.|+.+||.... ++ .. . ..+
T Consensus 208 ~~lg~~GLIsfSdY-iFLlTlLS-~p~~~F~IAFKMFD~dgnG~IdkeEF~~v~~li~sQ~~~g~~hrd~~tt~~s~~~~ 285 (489)
T KOG2643|consen 208 YKLGESGLISFSDY-IFLLTLLS-IPERNFRIAFKMFDLDGNGEIDKEEFETVQQLIRSQTSVGVRHRDHFTTGNSFKVE 285 (489)
T ss_pred EEcCCCCeeeHHHH-HHHHHHHc-cCcccceeeeeeeecCCCCcccHHHHHHHHHHHHhccccceecccCccccceehhh
Confidence 44555566554443 22222221 111335667888999999999999998764 11 00 0 011
Q ss_pred HHHHHHHHHHccCCCCCCceeHHHHHHHHHHhccCChHHHHHHHhhhhcCCCCCceeHHHHHHHHHhhhccCCCcchHHH
Q 003558 205 FAVELFDALTRRRNIQGDTITKDQLREFWDQISDQSFDSRLQTFFDMVDKDADGRITEDEVREIISLSASANKLSNIQKQ 284 (811)
Q Consensus 205 ~~~~lf~~l~d~d~~~~G~I~~~EF~~~~~~l~~~~~~e~l~~~F~~fDkD~dG~It~eE~~~il~~~~~~~~l~~~~~~ 284 (811)
....|-.-++-.++ +++++++||++++.++ .+|-++.=|..+|+..+|.|+..+|.+++......+...
T Consensus 286 ~nsaL~~yFFG~rg--~~kLs~deF~~F~e~L----q~Eil~lEF~~~~~~~~g~Ise~DFA~~lL~~a~~n~~~----- 354 (489)
T KOG2643|consen 286 VNSALLTYFFGKRG--NGKLSIDEFLKFQENL----QEEILELEFERFDKGDSGAISEVDFAELLLAYAGVNSKK----- 354 (489)
T ss_pred hhhhHHHHhhccCC--CccccHHHHHHHHHHH----HHHHHHHHHHHhCcccccccCHHHHHHHHHHHcccchHh-----
Confidence 12223333566777 9999999999999888 356677779999999999999999999986444333221
Q ss_pred HHHHHHHHHHHcCCCCCCcccHHHHHHHHH
Q 003558 285 AEEYAALIMEELDPDHLGCIMIDNLEMLLL 314 (811)
Q Consensus 285 ~~e~~~~i~~e~D~d~dG~Is~eEF~~~l~ 314 (811)
-+.+....-++++.+ +-.|+++||.+...
T Consensus 355 k~~~lkrvk~kf~~~-~~gISl~Ef~~Ff~ 383 (489)
T KOG2643|consen 355 KHKYLKRVKEKFKDD-GKGISLQEFKAFFR 383 (489)
T ss_pred HHHHHHHHHHhccCC-CCCcCHHHHHHHHH
Confidence 123445566677765 66799999988765
No 129
>PF00175 NAD_binding_1: Oxidoreductase NAD-binding domain ; InterPro: IPR001433 Bacterial ferredoxin-NADP+ reductase may be bound to the thylakoid membrane or anchored to the thylakoid-bound phycobilisomes. Chloroplast ferredoxin-NADP+ reductase (1.18.1.2 from EC) may play a key role in regulating the relative amounts of cyclic and non-cyclic electron flow to meet the demands of the plant for ATP and reducing power. It is involved in the final step in the linear photosynthetic electron transport chain and has also been implicated in cyclic electron flow around photosystem I where its role would be to return electrons from ferredoxin to the cytochrome B-F complex. This domain is present in a variety of proteins that include, bacterial flavohemoprotein, mammalian NADH-cytochrome b5 reductase, eukaryotic NADPH-cytochrome P450 reductase, nitrate reductase from plants, nitric-oxide synthase, bacterial vanillate demethylase, as well as others.; GO: 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 1UMK_A 1CNE_A 2CND_A 1CNF_A 4FK8_A 4F7D_A 2XNJ_B 1FDR_A 1JB9_A 3LVB_A ....
Probab=98.14 E-value=3.9e-06 Score=76.83 Aligned_cols=72 Identities=21% Similarity=0.322 Sum_probs=51.4
Q ss_pred EEEeCcCHHHHHHHHHHHHHhc-----------ccchhh-HHHHHHHhhhcCCC-eEEEEEcCCCCCCCcccCccccCCH
Q 003558 727 LVGLGIGATPMISIVKDIVNNM-----------KAIEEE-EENDLENGRDTGVN-TTIIIIDNNYEPFFFWTQKKGPIQD 793 (811)
Q Consensus 727 lIagGiGITP~lsil~~l~~~~-----------~~~~~~-~~~el~~~~~~~~~-~~i~v~~~~~~~~~~w~g~~G~i~~ 793 (811)
|||||+||||++|++++++.+. ++.+++ +.+++.+......+ ..++.+..+.+. |.+..|+|++
T Consensus 1 lIagGtGIaP~~s~l~~~~~~~~~~~v~l~~~~r~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~---~~~~~g~v~~ 77 (109)
T PF00175_consen 1 LIAGGTGIAPFLSMLRYLLERNDNRKVTLFYGARTPEDLLFRDELEALAQEYPNRFHVVYVSSPDDG---WDGFKGRVTD 77 (109)
T ss_dssp EEEEGGGGHHHHHHHHHHHHHTCTSEEEEEEEESSGGGSTTHHHHHHHHHHSTTCEEEEEETTTTSS---TTSEESSHHH
T ss_pred CeecceeHHHHHHHHHHHHHhCCCCCEEEEEEEcccccccchhHHHHHHhhcccccccccccccccc---cCCceeehhH
Confidence 7999999999999999999762 223333 45666666666665 444444555555 8999999999
Q ss_pred HHHHHhhc
Q 003558 794 KKSILLLG 801 (811)
Q Consensus 794 ~~~~~~~~ 801 (811)
...+.+..
T Consensus 78 ~~~~~~~~ 85 (109)
T PF00175_consen 78 LLLEDLLP 85 (109)
T ss_dssp HHHHHHHH
T ss_pred HHHHhhcc
Confidence 98665543
No 130
>KOG4251 consensus Calcium binding protein [General function prediction only]
Probab=98.11 E-value=5.2e-06 Score=84.02 Aligned_cols=186 Identities=14% Similarity=0.188 Sum_probs=120.4
Q ss_pred hHhhhHHHHHhhhccCCCCCCCccccCchhHHHHHhhhhhhhccCC---cccHHHHHHHHHhHccCCCCceehhhhcccc
Q 003558 120 IRQVSQELKRLASFAKKPQPPARFDRNKSAAAYALKGLKFISKTDG---GAGWANVEKRFDEITASTNGVLPRARFGECI 196 (811)
Q Consensus 120 ~~~~s~~lk~~~~~~~~~~~~~~~dr~~s~a~~alk~l~~i~~~~~---~~~~~~l~~~F~~lD~d~dG~Is~~ef~~~l 196 (811)
.+|.+.+|+.++ .+.|.+.++.++|.+..++|.++.. ++..++-+--|+..|+|+||.|+-+||+.-+
T Consensus 96 prrsrrklmviF---------sKvDVNtDrkisAkEmqrwImektaEHfqeameeSkthFraVDpdgDGhvsWdEykvkF 166 (362)
T KOG4251|consen 96 PRRSRRKLMVIF---------SKVDVNTDRKISAKEMQRWIMEKTAEHFQEAMEESKTHFRAVDPDGDGHVSWDEYKVKF 166 (362)
T ss_pred hhHHHHHHHHHH---------hhcccCccccccHHHHHHHHHHHHHHHHHHHHhhhhhheeeeCCCCCCceehhhhhhHH
Confidence 355556666665 6789999999999999999987653 3455667778999999999999999997654
Q ss_pred -cCCCCC----------------HHHHHHHHHHHHccCCCCC-----CceeHHHHHHHHHH-hccCChHHHHHHHhhhhc
Q 003558 197 -GMNKDS----------------KDFAVELFDALTRRRNIQG-----DTITKDQLREFWDQ-ISDQSFDSRLQTFFDMVD 253 (811)
Q Consensus 197 -g~~~~~----------------~~~~~~lf~~l~d~d~~~~-----G~I~~~EF~~~~~~-l~~~~~~e~l~~~F~~fD 253 (811)
.+++.+ .++.+++.+.+.++.+.-+ =-++-+||..++.- -+.+.-..-++.+.+.+|
T Consensus 167 laskghsekevadairlneelkVDeEtqevlenlkdRwyqaDsppadlllteeEflsFLHPEhSrgmLrfmVkeivrdlD 246 (362)
T KOG4251|consen 167 LASKGHSEKEVADAIRLNEELKVDEETQEVLENLKDRWYQADSPPADLLLTEEEFLSFLHPEHSRGMLRFMVKEIVRDLD 246 (362)
T ss_pred HhhcCcchHHHHHHhhccCcccccHHHHHHHHhhhhhhccccCchhhhhhhHHHHHHHcChHhhhhhHHHHHHHHHHHhc
Confidence 111100 1223333343333322101 12445888877642 233444556778889999
Q ss_pred CCCCCceeHHHHHHHHHhhhccCCCcchH-HHHHHHHHHHHHHcCCCCCCcccHHHHHHHHH
Q 003558 254 KDADGRITEDEVREIISLSASANKLSNIQ-KQAEEYAALIMEELDPDHLGCIMIDNLEMLLL 314 (811)
Q Consensus 254 kD~dG~It~eE~~~il~~~~~~~~l~~~~-~~~~e~~~~i~~e~D~d~dG~Is~eEF~~~l~ 314 (811)
+|||-.++..||....--......-..++ ...++-....=+++|.|.||.++++|++..+.
T Consensus 247 qdgDkqlSvpeFislpvGTVenqqgqdiddnwvkdRkkEFeElIDsNhDGivTaeELe~y~d 308 (362)
T KOG4251|consen 247 QDGDKQLSVPEFISLPVGTVENQQGQDIDDNWVKDRKKEFEELIDSNHDGIVTAEELEDYVD 308 (362)
T ss_pred cCCCeeecchhhhcCCCcchhhhhccchHHHHHHHHHHHHHHHhhcCCccceeHHHHHhhcC
Confidence 99999999999876653111111111111 12334445566678999999999999998743
No 131
>cd00051 EFh EF-hand, calcium binding motif; A diverse superfamily of calcium sensors and calcium signal modulators; most examples in this alignment model have 2 active canonical EF hands. Ca2+ binding induces a conformational change in the EF-hand motif, leading to the activation or inactivation of target proteins. EF-hands tend to occur in pairs or higher copy numbers.
Probab=98.10 E-value=4.4e-06 Score=66.99 Aligned_cols=61 Identities=30% Similarity=0.449 Sum_probs=47.3
Q ss_pred HHHHhhhhcCCCCCceeHHHHHHHHHhhhccCCCcchHHHHHHHHHHHHHHcCCCCCCcccHHHHHHHH
Q 003558 245 LQTFFDMVDKDADGRITEDEVREIISLSASANKLSNIQKQAEEYAALIMEELDPDHLGCIMIDNLEMLL 313 (811)
Q Consensus 245 l~~~F~~fDkD~dG~It~eE~~~il~~~~~~~~l~~~~~~~~e~~~~i~~e~D~d~dG~Is~eEF~~~l 313 (811)
++.+|+.+|.|++|.|+.+|+..++..... . ..++.+..+++.+|.+++|.|+++||..++
T Consensus 2 ~~~~f~~~d~~~~g~l~~~e~~~~l~~~~~----~----~~~~~~~~~~~~~~~~~~~~l~~~ef~~~~ 62 (63)
T cd00051 2 LREAFRLFDKDGDGTISADELKAALKSLGE----G----LSEEEIDEMIREVDKDGDGKIDFEEFLELM 62 (63)
T ss_pred HHHHHHHhCCCCCCcCcHHHHHHHHHHhCC----C----CCHHHHHHHHHHhCCCCCCeEeHHHHHHHh
Confidence 577899999999999999999998863321 1 123445568888999999999999998765
No 132
>PF13833 EF-hand_8: EF-hand domain pair; PDB: 3KF9_A 1TTX_A 1WLZ_A 1ALV_A 1NX3_A 1ALW_A 1NX2_A 1NX1_A 1NX0_A 1DF0_A ....
Probab=98.08 E-value=1e-05 Score=64.53 Aligned_cols=53 Identities=32% Similarity=0.463 Sum_probs=41.1
Q ss_pred CCCceeHHHHHHHHHhhhccCCCcchHHHHHHHHHHHHHHcCCCCCCcccHHHHHHHHHh
Q 003558 256 ADGRITEDEVREIISLSASANKLSNIQKQAEEYAALIMEELDPDHLGCIMIDNLEMLLLQ 315 (811)
Q Consensus 256 ~dG~It~eE~~~il~~~~~~~~l~~~~~~~~e~~~~i~~e~D~d~dG~Is~eEF~~~l~~ 315 (811)
.+|+|+.+||+.++..... ..++ ++.++.+|..+|.|++|+|+|+||+.+|..
T Consensus 1 ~~G~i~~~~~~~~l~~~g~-~~~s------~~e~~~l~~~~D~~~~G~I~~~EF~~~~~~ 53 (54)
T PF13833_consen 1 KDGKITREEFRRALSKLGI-KDLS------EEEVDRLFREFDTDGDGYISFDEFISMMQR 53 (54)
T ss_dssp SSSEEEHHHHHHHHHHTTS-SSSC------HHHHHHHHHHHTTSSSSSEEHHHHHHHHHH
T ss_pred CcCEECHHHHHHHHHHhCC-CCCC------HHHHHHHHHhcccCCCCCCCHHHHHHHHHh
Confidence 3799999999999953211 1133 233666999999999999999999999864
No 133
>cd05022 S-100A13 S-100A13: S-100A13 domain found in proteins similar to S100A13. S100A13 is a calcium-binding protein belonging to a large S100 vertebrate-specific protein family within the EF-hand superfamily of calcium-binding proteins. Note that the S-100 hierarchy, to which this S-100A13 group belongs, contains only S-100 EF-hand domains, other EF-hands have been modeled separately. S100A13 is involved in the cellular export of interleukin-1 (IL-1) and of fibroblast growth factor-1 (FGF-1), which plays an important role in angiogenesis and tissue regeneration. Export is based on the CuII-dependent formation of multiprotein complexes containing the S100A13 protein. Assembly of these complexes occurs near the inner surface of the plasma membrane. Binding of two Ca(II) ions per monomer triggers key conformational changes leading to the creation of two identical and symmetrical Cu(II)-binding sites on the surface of the protein, close to the interface between the two monomers. These Cu
Probab=98.04 E-value=1.2e-05 Score=71.35 Aligned_cols=63 Identities=19% Similarity=0.301 Sum_probs=52.7
Q ss_pred HHHHHHHHHHcc-CCCCCCceeHHHHHHHHHH-hccCChH-HHHHHHhhhhcCCCCCceeHHHHHHHHH
Q 003558 205 FAVELFDALTRR-RNIQGDTITKDQLREFWDQ-ISDQSFD-SRLQTFFDMVDKDADGRITEDEVREIIS 270 (811)
Q Consensus 205 ~~~~lf~~l~d~-d~~~~G~I~~~EF~~~~~~-l~~~~~~-e~l~~~F~~fDkD~dG~It~eE~~~il~ 270 (811)
.+.++|+. +|+ ++ +|+|+.+||..++.. ++....+ +.++.+|+..|.|+||.|+++||..++.
T Consensus 9 ~l~~~F~~-fd~~~~--~g~i~~~ELk~ll~~elg~~ls~~~~v~~mi~~~D~d~DG~I~F~EF~~l~~ 74 (89)
T cd05022 9 TLVSNFHK-ASVKGG--KESLTASEFQELLTQQLPHLLKDVEGLEEKMKNLDVNQDSKLSFEEFWELIG 74 (89)
T ss_pred HHHHHHHH-HhCCCC--CCeECHHHHHHHHHHHhhhhccCHHHHHHHHHHhCCCCCCCCcHHHHHHHHH
Confidence 45677885 566 55 899999999999988 7655555 8899999999999999999999998886
No 134
>PF00036 EF-hand_1: EF hand; InterPro: IPR018248 Many calcium-binding proteins belong to the same evolutionary family and share a type of calcium-binding domain known as the EF-hand. This type of domain consists of a twelve residue loop flanked on both sides by a twelve residue alpha-helical domain. In an EF-hand loop the calcium ion is coordinated in a pentagonal bipyramidal configuration. The six residues involved in the binding are in positions 1, 3, 5, 7, 9 and 12; these residues are denoted by X, Y, Z, -Y, -X and -Z. The invariant Glu or Asp at position 12 provides two oxygens for liganding Ca (bidentate ligand).; PDB: 1BJF_A 1XFW_R 1XFV_O 2K0J_A 2F3Z_A 3BYA_A 1XFU_Q 2R28_B 1ZOT_B 3G43_D ....
Probab=98.03 E-value=5.6e-06 Score=57.38 Aligned_cols=27 Identities=37% Similarity=0.658 Sum_probs=25.1
Q ss_pred HHHHHhhhhcCCCCCceeHHHHHHHHH
Q 003558 244 RLQTFFDMVDKDADGRITEDEVREIIS 270 (811)
Q Consensus 244 ~l~~~F~~fDkD~dG~It~eE~~~il~ 270 (811)
+++.+|+.||+|+||+|+++||..+++
T Consensus 1 E~~~~F~~~D~d~dG~I~~~Ef~~~~~ 27 (29)
T PF00036_consen 1 ELKEAFREFDKDGDGKIDFEEFKEMMK 27 (29)
T ss_dssp HHHHHHHHHSTTSSSEEEHHHHHHHHH
T ss_pred CHHHHHHHHCCCCCCcCCHHHHHHHHH
Confidence 478999999999999999999999985
No 135
>cd05026 S-100Z S-100Z: S-100Z domain found in proteins similar to S100Z. S100Z is a member of the S100 domain family within the EF-hand Ca2+-binding proteins superfamily. Note that the S-100 hierarchy, to which this S-100Z group belongs, contains only S-100 EF-hand domains, other EF-hands have been modeled separately.S100 proteins exhibit unique patterns of tissue- and cell type-specific expression and have been implicated in the Ca2+-dependent regulation of diverse physiological processes, including cell cycle regulation, differentiation, growth, and metabolic control. S100Z is normally expressed in various tissues, with its highest level of expression being in spleen and leukocytes. The function of S100Z remains unclear. Preliminary structural data suggests that S100Z is homodimer, however a heterodimer with S100P has been reported. S100Z is capable of binding calcium ions. When calcium binds to S110Z, the protein experiences a conformational change, which exposes hydrophobic surfac
Probab=98.01 E-value=2e-05 Score=70.65 Aligned_cols=64 Identities=14% Similarity=0.303 Sum_probs=51.7
Q ss_pred HHHHHHHHHHccCCCCCC-ceeHHHHHHHHHHh-----ccCChHHHHHHHhhhhcCCCCCceeHHHHHHHHH
Q 003558 205 FAVELFDALTRRRNIQGD-TITKDQLREFWDQI-----SDQSFDSRLQTFFDMVDKDADGRITEDEVREIIS 270 (811)
Q Consensus 205 ~~~~lf~~l~d~d~~~~G-~I~~~EF~~~~~~l-----~~~~~~e~l~~~F~~fDkD~dG~It~eE~~~il~ 270 (811)
.+.++|+.+++.|+ +| +|+.+||..++... .....++.+..+++.+|.|+||.|+++||..++.
T Consensus 11 ~~~~~F~~~dd~dg--dg~~Is~~EL~~ll~~~~~~~~~~~~~~~~v~~i~~elD~n~dG~Idf~EF~~l~~ 80 (93)
T cd05026 11 TLIRIFHNYSGKEG--DRYKLSKGELKELLQRELTDFLSSQKDPMLVDKIMNDLDSNKDNEVDFNEFVVLVA 80 (93)
T ss_pred HHHHHHHHHHccCC--CCCEECHHHHHHHHHHHhHHhcccccCHHHHHHHHHHhCCCCCCCCCHHHHHHHHH
Confidence 35567887666777 77 59999999998663 2334667899999999999999999999999886
No 136
>cd05027 S-100B S-100B: S-100B domain found in proteins similar to S100B. S100B is a calcium-binding protein belonging to a large S100 vertebrate-specific protein family within the EF-hand superfamily of calcium-binding proteins. Note that the S-100 hierarchy, to which this S-100B group belongs, contains only S-100 EF-hand domains, other EF-hands have been modeled separately. S100B is most abundant in glial cells of the central nervous system, predominately in astrocytes. S100B is involved in signal transduction via the inhibition of protein phoshorylation, regulation of enzyme activity and by affecting the calcium homeostasis. Upon calcium binding the S100B homodimer changes conformation to expose a hydrophobic cleft, which represents the interaction site of S100B with its more than 20 known target proteins. These target proteins include several cellular architecture proteins such as tubulin and GFAP; S100B can inhibit polymerization of these oligomeric molecules. Furthermore, S100B i
Probab=97.99 E-value=2.2e-05 Score=69.61 Aligned_cols=64 Identities=16% Similarity=0.376 Sum_probs=51.3
Q ss_pred HHHHHHHHHHccCCCCCC-ceeHHHHHHHHHH-----hccCChHHHHHHHhhhhcCCCCCceeHHHHHHHHH
Q 003558 205 FAVELFDALTRRRNIQGD-TITKDQLREFWDQ-----ISDQSFDSRLQTFFDMVDKDADGRITEDEVREIIS 270 (811)
Q Consensus 205 ~~~~lf~~l~d~d~~~~G-~I~~~EF~~~~~~-----l~~~~~~e~l~~~F~~fDkD~dG~It~eE~~~il~ 270 (811)
.+.++|+.++++++ +| .|+.+||..++.. ++....++.+..+++.+|+|+||.|+++||..++.
T Consensus 9 ~l~~aF~~fD~~dg--dG~~I~~~eL~~ll~~~~~~~lg~~~~~~~v~~~i~~~D~n~dG~v~f~eF~~li~ 78 (88)
T cd05027 9 ALIDVFHQYSGREG--DKHKLKKSELKELINNELSHFLEEIKEQEVVDKVMETLDSDGDGECDFQEFMAFVA 78 (88)
T ss_pred HHHHHHHHhcccCC--CcCEECHHHHHHHHHHHhHHHhcCCCCHHHHHHHHHHhCCCCCCcCcHHHHHHHHH
Confidence 35667885444666 88 5888888888887 66666778899999999999999999999988875
No 137
>smart00027 EH Eps15 homology domain. Pair of EF hand motifs that recognise proteins containing Asn-Pro-Phe (NPF) sequences.
Probab=97.88 E-value=1.9e-05 Score=71.19 Aligned_cols=60 Identities=18% Similarity=0.296 Sum_probs=38.4
Q ss_pred HHHHHHHHHccCCCCCCceeHHHHHHHHHHhccCChHHHHHHHhhhhcCCCCCceeHHHHHHHHH
Q 003558 206 AVELFDALTRRRNIQGDTITKDQLREFWDQISDQSFDSRLQTFFDMVDKDADGRITEDEVREIIS 270 (811)
Q Consensus 206 ~~~lf~~l~d~d~~~~G~I~~~EF~~~~~~l~~~~~~e~l~~~F~~fDkD~dG~It~eE~~~il~ 270 (811)
+.++|+. .|.++ +|.|+++|+..++... +..+++++.+|..+|.|++|.|+++||..++.
T Consensus 12 l~~~F~~-~D~d~--~G~Is~~el~~~l~~~--~~~~~ev~~i~~~~d~~~~g~I~~~eF~~~~~ 71 (96)
T smart00027 12 YEQIFRS-LDKNQ--DGTVTGAQAKPILLKS--GLPQTLLAKIWNLADIDNDGELDKDEFALAMH 71 (96)
T ss_pred HHHHHHH-hCCCC--CCeEeHHHHHHHHHHc--CCCHHHHHHHHHHhcCCCCCCcCHHHHHHHHH
Confidence 4455653 44444 6666666666666553 23455677777777777777777777777665
No 138
>cd05030 calgranulins Calgranulins: S-100 domain found in proteins belonging to the Calgranulin subgroup of the S100 family of EF-hand calcium-modulated proteins, including S100A8, S100A9, and S100A12 . Note that the S-100 hierarchy, to which this Calgranulin group belongs, contains only S-100 EF-hand domains, other EF-hands have been modeled separately. These proteins are expressed mainly in granulocytes, and are involved in inflammation, allergy, and neuritogenesis, as well as in host-parasite response. Calgranulins are modulated not only by calcium, but also by other metals such as zinc and copper. Structural data suggested that calgranulins may exist in multiple structural forms, homodimers, as well as hetero-oligomers. For example, the S100A8/S100A9 complex called calprotectin plays important roles in the regulation of inflammatory processes, wound repair, and regulating zinc-dependent enzymes as well as microbial growth.
Probab=97.88 E-value=4.1e-05 Score=67.92 Aligned_cols=70 Identities=13% Similarity=0.291 Sum_probs=51.7
Q ss_pred HHHHHhhhhcCC--CCCceeHHHHHHHHHhhhccCCCcchHHHHHHHHHHHHHHcCCCCCCcccHHHHHHHHHhC
Q 003558 244 RLQTFFDMVDKD--ADGRITEDEVREIISLSASANKLSNIQKQAEEYAALIMEELDPDHLGCIMIDNLEMLLLQA 316 (811)
Q Consensus 244 ~l~~~F~~fDkD--~dG~It~eE~~~il~~~~~~~~l~~~~~~~~e~~~~i~~e~D~d~dG~Is~eEF~~~l~~~ 316 (811)
.+-..|..|+.+ .+|+|+.+||++++...... .++ ....++.++.+|+++|.|+||.|+|+||..+|...
T Consensus 9 ~~~~~f~~y~~~~~~~~~Is~~El~~ll~~~~g~-~~t--~~~~~~~v~~i~~~~D~d~dG~I~f~eF~~~~~~~ 80 (88)
T cd05030 9 TIINVFHQYSVRKGHPDTLYKKEFKQLVEKELPN-FLK--KEKNQKAIDKIFEDLDTNQDGQLSFEEFLVLVIKV 80 (88)
T ss_pred HHHHHHHHHhccCCCcccCCHHHHHHHHHHHhhH-hhc--cCCCHHHHHHHHHHcCCCCCCcCcHHHHHHHHHHH
Confidence 466789999865 48999999999999632211 111 01124567779999999999999999999998753
No 139
>KOG0751 consensus Mitochondrial aspartate/glutamate carrier protein Aralar/Citrin (contains EF-hand Ca2+-binding domains) [Energy production and conversion]
Probab=97.88 E-value=8.4e-05 Score=82.15 Aligned_cols=147 Identities=14% Similarity=0.234 Sum_probs=101.0
Q ss_pred cHHHHHHHHHhHccCCCCceehhhhcccc----cCCCCCHHHHHHHHHHHHccCCCCCCceeHHHHHHHHHHhccCChHH
Q 003558 168 GWANVEKRFDEITASTNGVLPRARFGECI----GMNKDSKDFAVELFDALTRRRNIQGDTITKDQLREFWDQISDQSFDS 243 (811)
Q Consensus 168 ~~~~l~~~F~~lD~d~dG~Is~~ef~~~l----g~~~~~~~~~~~lf~~l~d~d~~~~G~I~~~EF~~~~~~l~~~~~~e 243 (811)
+...+.-.|...+.++.-..+.++|.... +... .+....++....+|... ||-|+|+||..+-..++. +|.
T Consensus 34 eLr~if~~~as~e~~ge~~mt~edFv~~ylgL~~e~~-~n~~~v~Lla~iaD~tK--Dglisf~eF~afe~~lC~--pDa 108 (694)
T KOG0751|consen 34 ELRSIFLKYASIEKNGESYMTPEDFVRRYLGLYNESN-FNDKIVRLLASIADQTK--DGLISFQEFRAFESVLCA--PDA 108 (694)
T ss_pred HHHHHHHHHhHHhhccccccCHHHHHHHHHhhccccc-CChHHHHHHHhhhhhcc--cccccHHHHHHHHhhccC--chH
Confidence 33444444555556666789999997753 3333 34456667666677655 899999999988766653 477
Q ss_pred HHHHHhhhhcCCCCCceeHHHHHHHHHhhhccCCCc---------------------------chHHHHHHHHHHHHHHc
Q 003558 244 RLQTFFDMVDKDADGRITEDEVREIISLSASANKLS---------------------------NIQKQAEEYAALIMEEL 296 (811)
Q Consensus 244 ~l~~~F~~fDkD~dG~It~eE~~~il~~~~~~~~l~---------------------------~~~~~~~e~~~~i~~e~ 296 (811)
..+.+|+.||+.++|.+|.+++.+++.-..-.+... .+.+-..|.+++.|++-
T Consensus 109 l~~~aFqlFDr~~~~~vs~~~~~~if~~t~l~~~~~f~~d~efI~~~Fg~~~~r~~ny~~f~Q~lh~~~~E~~~qafr~~ 188 (694)
T KOG0751|consen 109 LFEVAFQLFDRLGNGEVSFEDVADIFGQTNLHHHIPFNWDSEFIKLHFGDIRKRHLNYAEFTQFLHEFQLEHAEQAFREK 188 (694)
T ss_pred HHHHHHHHhcccCCCceehHHHHHHHhccccccCCCccCCcchHHHHhhhHHHHhccHHHHHHHHHHHHHHHHHHHHHHh
Confidence 889999999999999999999999986221111111 01122344567788888
Q ss_pred CCCCCCcccHHHHHHHHHhCCcc
Q 003558 297 DPDHLGCIMIDNLEMLLLQAPAQ 319 (811)
Q Consensus 297 D~d~dG~Is~eEF~~~l~~~p~~ 319 (811)
|+.++|.|+--+|...|...-..
T Consensus 189 d~~~ng~is~Ldfq~imvt~~~h 211 (694)
T KOG0751|consen 189 DKAKNGFISVLDFQDIMVTIRIH 211 (694)
T ss_pred cccCCCeeeeechHhhhhhhhhh
Confidence 88888888888888877655433
No 140
>PRK05419 putative sulfite oxidase subunit YedZ; Reviewed
Probab=97.87 E-value=0.00016 Score=74.25 Aligned_cols=126 Identities=15% Similarity=0.104 Sum_probs=82.6
Q ss_pred cCcchhhHHHHHHHHHHHHHHHHHHhhhccccceeeecCcCccCCCCcccCCCCcchhhhhhcchhHHHHHHHHHHHHHH
Q 003558 438 PFDDNLNFHKVIAVGISIGVGIHAISHLACDFPRLINASEEKYEPMEPYFGDQPKNYWHFVKSVEGVTGIVMVVLMAIAF 517 (811)
Q Consensus 438 ~~d~~~~fHk~ig~~~~~~~~lH~i~~l~~~f~~~~~~~~~~~~~~~~~~~~~~~~y~~~~~~~~~~tGiv~~v~~~i~~ 517 (811)
+.++.+.+||++|..+++.+++|.+.++..+. .++ ....++ ...+....+.|.+++++++.+.
T Consensus 69 ~~~~l~~~RR~LGl~af~~a~lH~~~y~~~~~---------~~~-~~~~~~-------~i~~~~~i~~G~ia~~lLl~La 131 (205)
T PRK05419 69 GQPLLIRTRRLLGLWAFFYATLHLLSYLLLDL---------GLD-WSLLGK-------EIVKRPYITVGMAAFLILLPLA 131 (205)
T ss_pred CCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---------ccc-HHHHHH-------HHHhchHHHHHHHHHHHHHHHH
Confidence 45688999999999999999999987763211 110 000000 1122223456888888888888
Q ss_pred HhcchhhhcccCCCCCccccccchhHHHHHHHHHHHHHHHHHHHhhhhhhccccccceeeehhhHHHHHHHHHHHHHHh
Q 003558 518 TLATPWFRRNKLNLPKPLKKLTGFNAFWYSHHLFVIVYTLLIVHGQYLYLTKKWYKKTTWMYLAIPICLYATERLIRAL 596 (811)
Q Consensus 518 ~~s~~~~Rr~~~~~~~p~~~~~~ye~F~~~H~l~~i~~vll~~H~~~~~~~~~w~~~~~w~y~~~~~~l~~~dr~~R~~ 596 (811)
++|..+.||+. +| .|..+|.+..+++++.++|..... .... .....|.++ ++++..-|+.+..
T Consensus 132 iTS~~~~~rrL-----------g~-~Wk~LH~l~Y~a~~L~~~H~~~~~-k~~~--~~~~~y~~~-~~~ll~~R~~~~~ 194 (205)
T PRK05419 132 LTSTRASQRRL-----------GK-RWQKLHRLVYLIAILAPLHYLWSV-KSDS--PEPLIYAAI-VAVLLALRLKKLR 194 (205)
T ss_pred HHhhHHHHHHH-----------HH-HHHHHHHHHHHHHHHHHHHHHHHh-cccc--ccHHHHHHH-HHHHHHHHHHHHH
Confidence 99999988762 57 799999999888888899954321 1111 123456544 3455556777665
No 141
>PF14658 EF-hand_9: EF-hand domain
Probab=97.87 E-value=2.7e-05 Score=64.37 Aligned_cols=62 Identities=19% Similarity=0.366 Sum_probs=49.6
Q ss_pred HHhhhhcCCCCCceeHHHHHHHHHhhhccCCCcchHHHHHHHHHHHHHHcCCCCC-CcccHHHHHHHHHh
Q 003558 247 TFFDMVDKDADGRITEDEVREIISLSASANKLSNIQKQAEEYAALIMEELDPDHL-GCIMIDNLEMLLLQ 315 (811)
Q Consensus 247 ~~F~~fDkD~dG~It~eE~~~il~~~~~~~~l~~~~~~~~e~~~~i~~e~D~d~d-G~Is~eEF~~~l~~ 315 (811)
.+|++||.++.|.|...++..+|+..+..+. + +. .++.+..++|+++. |.|++++|+..|++
T Consensus 2 ~~F~~fD~~~tG~V~v~~l~~~Lra~~~~~p-~--e~----~Lq~l~~elDP~g~~~~v~~d~F~~iM~~ 64 (66)
T PF14658_consen 2 TAFDAFDTQKTGRVPVSDLITYLRAVTGRSP-E--ES----ELQDLINELDPEGRDGSVNFDTFLAIMRD 64 (66)
T ss_pred cchhhcCCcCCceEeHHHHHHHHHHHcCCCC-c--HH----HHHHHHHHhCCCCCCceEeHHHHHHHHHH
Confidence 4799999999999999999999985544111 1 22 34447888999998 99999999999975
No 142
>cd05025 S-100A1 S-100A1: S-100A1 domain found in proteins similar to S100A1. S100A1 is a calcium-binding protein belonging to a large S100 vertebrate-specific protein family within the EF-hand superfamily of calcium-binding proteins. Note that the S-100 hierarchy, to which this S-100A1 group belongs, contains only S-100 EF-hand domains, other EF-hands have been modeled separately. As is the case with many other members of S100 protein family, S100A1 is implicated in intracellular and extracellular regulatory activities, including interaction with myosin-associated twitchin kinase, actin-capping protein CapZ, sinapsin I, and tubulin. Structural data suggests that S100A1 proteins exist within cells as antiparallel homodimers, while heterodimers with S100A4 and S100B also has been reported. Upon binding calcium S100A1 changes conformation to expose a hydrophobic cleft which is the interaction site of S100A1 with its more that 20 known target proteins.
Probab=97.86 E-value=5.1e-05 Score=67.80 Aligned_cols=65 Identities=17% Similarity=0.409 Sum_probs=49.9
Q ss_pred HHHHHHHHHHHccCCCCCC-ceeHHHHHHHHHH-hcc----CChHHHHHHHhhhhcCCCCCceeHHHHHHHHH
Q 003558 204 DFAVELFDALTRRRNIQGD-TITKDQLREFWDQ-ISD----QSFDSRLQTFFDMVDKDADGRITEDEVREIIS 270 (811)
Q Consensus 204 ~~~~~lf~~l~d~d~~~~G-~I~~~EF~~~~~~-l~~----~~~~e~l~~~F~~fDkD~dG~It~eE~~~il~ 270 (811)
+.+.+.|+.++|+++ +| .|+.+|+..++.. ++. ...++.++.+|+.+|.|++|.|+++||..++.
T Consensus 9 ~~l~~~F~~fDd~dg--~G~~Is~~El~~~l~~~lg~~~~~~~s~~~v~~i~~~~D~d~~G~I~f~eF~~l~~ 79 (92)
T cd05025 9 ETLINVFHAHSGKEG--DKYKLSKKELKDLLQTELSDFLDAQKDADAVDKIMKELDENGDGEVDFQEFVVLVA 79 (92)
T ss_pred HHHHHHHHHHhcccC--CCCeECHHHHHHHHHHHHHHHccCCCCHHHHHHHHHHHCCCCCCcCcHHHHHHHHH
Confidence 456778885444776 88 4888888888864 432 23567899999999999999999999988875
No 143
>cd00051 EFh EF-hand, calcium binding motif; A diverse superfamily of calcium sensors and calcium signal modulators; most examples in this alignment model have 2 active canonical EF hands. Ca2+ binding induces a conformational change in the EF-hand motif, leading to the activation or inactivation of target proteins. EF-hands tend to occur in pairs or higher copy numbers.
Probab=97.82 E-value=6.6e-05 Score=60.01 Aligned_cols=61 Identities=25% Similarity=0.408 Sum_probs=52.6
Q ss_pred HHHHHHHHHccCCCCCCceeHHHHHHHHHHhccCChHHHHHHHhhhhcCCCCCceeHHHHHHHH
Q 003558 206 AVELFDALTRRRNIQGDTITKDQLREFWDQISDQSFDSRLQTFFDMVDKDADGRITEDEVREII 269 (811)
Q Consensus 206 ~~~lf~~l~d~d~~~~G~I~~~EF~~~~~~l~~~~~~e~l~~~F~~fDkD~dG~It~eE~~~il 269 (811)
+..+|+. .|.++ +|.|+++||..++..+.....++.++.+|+.+|.|++|.|+.+||..++
T Consensus 2 ~~~~f~~-~d~~~--~g~l~~~e~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~ef~~~~ 62 (63)
T cd00051 2 LREAFRL-FDKDG--DGTISADELKAALKSLGEGLSEEEIDEMIREVDKDGDGKIDFEEFLELM 62 (63)
T ss_pred HHHHHHH-hCCCC--CCcCcHHHHHHHHHHhCCCCCHHHHHHHHHHhCCCCCCeEeHHHHHHHh
Confidence 3567774 56666 8999999999999998888888999999999999999999999998765
No 144
>KOG2643 consensus Ca2+ binding protein, contains EF-hand motifs [Inorganic ion transport and metabolism]
Probab=97.82 E-value=3.9e-05 Score=84.09 Aligned_cols=155 Identities=14% Similarity=0.267 Sum_probs=101.4
Q ss_pred cccCchhHHHHHhhhhhhhccCCcccHHHHHHHHHhHccCCCCceehhhhcccc----cCCCC-CHHHHHHHHHHHHccC
Q 003558 143 FDRNKSAAAYALKGLKFISKTDGGAGWANVEKRFDEITASTNGVLPRARFGECI----GMNKD-SKDFAVELFDALTRRR 217 (811)
Q Consensus 143 ~dr~~s~a~~alk~l~~i~~~~~~~~~~~l~~~F~~lD~d~dG~Is~~ef~~~l----g~~~~-~~~~~~~lf~~l~d~d 217 (811)
|..++++..+.-|.++|.... +.+-++--|..+|+..+|.|+..+|++.+ +.+.. .....+++-+.+.+
T Consensus 295 FG~rg~~kLs~deF~~F~e~L----q~Eil~lEF~~~~~~~~g~Ise~DFA~~lL~~a~~n~~~k~~~lkrvk~kf~~-- 368 (489)
T KOG2643|consen 295 FGKRGNGKLSIDEFLKFQENL----QEEILELEFERFDKGDSGAISEVDFAELLLAYAGVNSKKKHKYLKRVKEKFKD-- 368 (489)
T ss_pred hccCCCccccHHHHHHHHHHH----HHHHHHHHHHHhCcccccccCHHHHHHHHHHHcccchHhHHHHHHHHHHhccC--
Confidence 556666666666666665543 23446667999999777999999999986 22210 11234444443211
Q ss_pred CCCCCceeHHHHHHHHHHhccCChHHHHHHHhhhhcCCCCCceeHHHHHHHHHhhhccCCCcchHHHHHHHHHHHHHHcC
Q 003558 218 NIQGDTITKDQLREFWDQISDQSFDSRLQTFFDMVDKDADGRITEDEVREIISLSASANKLSNIQKQAEEYAALIMEELD 297 (811)
Q Consensus 218 ~~~~G~I~~~EF~~~~~~l~~~~~~e~l~~~F~~fDkD~dG~It~eE~~~il~~~~~~~~l~~~~~~~~e~~~~i~~e~D 297 (811)
.+-.|+++||.++..-+.+...-+-.-.+|. ...+.|+..||+++..... +..++ +-.++.+|.-+|
T Consensus 369 --~~~gISl~Ef~~Ff~Fl~~l~dfd~Al~fy~----~Ag~~i~~~~f~raa~~vt-GveLS------dhVvdvvF~IFD 435 (489)
T KOG2643|consen 369 --DGKGISLQEFKAFFRFLNNLNDFDIALRFYH----MAGASIDEKTFQRAAKVVT-GVELS------DHVVDVVFTIFD 435 (489)
T ss_pred --CCCCcCHHHHHHHHHHHhhhhHHHHHHHHHH----HcCCCCCHHHHHHHHHHhc-Ccccc------cceeeeEEEEEc
Confidence 1457999999998876655444333333443 3567899999999986222 12233 224555888999
Q ss_pred CCCCCcccHHHHHHHHHhC
Q 003558 298 PDHLGCIMIDNLEMLLLQA 316 (811)
Q Consensus 298 ~d~dG~Is~eEF~~~l~~~ 316 (811)
.|+||.++++||..+|++-
T Consensus 436 ~N~Dg~LS~~EFl~Vmk~R 454 (489)
T KOG2643|consen 436 ENNDGTLSHKEFLAVMKRR 454 (489)
T ss_pred cCCCCcccHHHHHHHHHHH
Confidence 9999999999999999854
No 145
>KOG0377 consensus Protein serine/threonine phosphatase RDGC/PPEF, contains STphosphatase and EF-hand domains [Signal transduction mechanisms]
Probab=97.81 E-value=5.1e-05 Score=82.80 Aligned_cols=129 Identities=18% Similarity=0.285 Sum_probs=97.0
Q ss_pred CCCCccccCchhHHHHHhhhhhhhccCC-cccHHHHHHHHHhHccCCCCceehhhhcccccCC---------------CC
Q 003558 138 QPPARFDRNKSAAAYALKGLKFISKTDG-GAGWANVEKRFDEITASTNGVLPRARFGECIGMN---------------KD 201 (811)
Q Consensus 138 ~~~~~~dr~~s~a~~alk~l~~i~~~~~-~~~~~~l~~~F~~lD~d~dG~Is~~ef~~~lg~~---------------~~ 201 (811)
+.|+++|-.++|.+..++--.++....+ ...|..+.......+ .||.+...+..+.+... .
T Consensus 468 ~eF~~~D~~ksG~lsis~Wa~~mE~i~~L~LPWr~L~~kla~~s--~d~~v~Y~~~~~~l~~e~~~~ea~~slvetLYr- 544 (631)
T KOG0377|consen 468 DEFRKYDPKKSGKLSISHWAKCMENITGLNLPWRLLRPKLANGS--DDGKVEYKSTLDNLDTEVILEEAGSSLVETLYR- 544 (631)
T ss_pred HHHHhcChhhcCeeeHHHHHHHHHHHhcCCCcHHHhhhhccCCC--cCcceehHhHHHHhhhhhHHHHHHhHHHHHHHh-
Confidence 3457899999999988887777765443 577888877666655 57777766554444111 1
Q ss_pred CHHHHHHHHHHHHccCCCCCCceeHHHHHHHHHHhcc----CChHHHHHHHhhhhcCCCCCceeHHHHHHHHHhh
Q 003558 202 SKDFAVELFDALTRRRNIQGDTITKDQLREFWDQISD----QSFDSRLQTFFDMVDKDADGRITEDEVREIISLS 272 (811)
Q Consensus 202 ~~~~~~~lf~~l~d~d~~~~G~I~~~EF~~~~~~l~~----~~~~e~l~~~F~~fDkD~dG~It~eE~~~il~~~ 272 (811)
.+..++.+|++ .|.|+ +|.|+.+||.++|..++. ...++++-..-+.+|.|+||+|+..||-+++.+.
T Consensus 545 ~ks~LetiF~~-iD~D~--SG~isldEF~~a~~l~~sh~~~~i~~~~i~~la~~mD~NkDG~IDlNEfLeAFrlv 616 (631)
T KOG0377|consen 545 NKSSLETIFNI-IDADN--SGEISLDEFRTAWKLLSSHMNGAISDDEILELARSMDLNKDGKIDLNEFLEAFRLV 616 (631)
T ss_pred chhhHHHHHHH-hccCC--CCceeHHHHHHHHHHHHhhcCCCcCHHHHHHHHHhhccCCCCcccHHHHHHHHhhh
Confidence 23446788994 77777 999999999999987743 3567888889999999999999999999998744
No 146
>KOG0030 consensus Myosin essential light chain, EF-Hand protein superfamily [Cytoskeleton]
Probab=97.76 E-value=0.00018 Score=67.47 Aligned_cols=111 Identities=17% Similarity=0.181 Sum_probs=91.8
Q ss_pred CHHHHHHHHHHHHccCCCCCCceeHHHHHHHHHHhccCChHHHHHHHhhhhcCC--CCCceeHHHHHHHHHhhhccCCCc
Q 003558 202 SKDFAVELFDALTRRRNIQGDTITKDQLREFWDQISDQSFDSRLQTFFDMVDKD--ADGRITEDEVREIISLSASANKLS 279 (811)
Q Consensus 202 ~~~~~~~lf~~l~d~d~~~~G~I~~~EF~~~~~~l~~~~~~e~l~~~F~~fDkD--~dG~It~eE~~~il~~~~~~~~l~ 279 (811)
..+..+++|. ++|+.+ +|.|++.+.-++++.++.+..+.++.+.-..++++ +--+|++|+|--+++.... ++.
T Consensus 9 ~~~e~ke~F~-lfD~~g--D~ki~~~q~gdvlRalG~nPT~aeV~k~l~~~~~~~~~~~rl~FE~fLpm~q~vak-nk~- 83 (152)
T KOG0030|consen 9 QMEEFKEAFL-LFDRTG--DGKISGSQVGDVLRALGQNPTNAEVLKVLGQPKRREMNVKRLDFEEFLPMYQQVAK-NKD- 83 (152)
T ss_pred hHHHHHHHHH-HHhccC--cccccHHHHHHHHHHhcCCCcHHHHHHHHcCcccchhhhhhhhHHHHHHHHHHHHh-ccc-
Confidence 4567889999 688887 99999999999999999999999999999999988 6789999999998874433 221
Q ss_pred chHHHHHHHHHHHHHHcCCCCCCcccHHHHHHHHHhCCccc
Q 003558 280 NIQKQAEEYAALIMEELDPDHLGCIMIDNLEMLLLQAPAQS 320 (811)
Q Consensus 280 ~~~~~~~e~~~~i~~e~D~d~dG~Is~eEF~~~l~~~p~~~ 320 (811)
+-..+++++ -++-+|++++|.|...|++.+|...-+.+
T Consensus 84 --q~t~edfve-gLrvFDkeg~G~i~~aeLRhvLttlGekl 121 (152)
T KOG0030|consen 84 --QGTYEDFVE-GLRVFDKEGNGTIMGAELRHVLTTLGEKL 121 (152)
T ss_pred --cCcHHHHHH-HHHhhcccCCcceeHHHHHHHHHHHHhhc
Confidence 234566666 67889999999999999999998765544
No 147
>cd05031 S-100A10_like S-100A10_like: S-100A10 domain found in proteins similar to S100A10. S100A10 is a member of the S100 family of EF-hand superfamily of calcium-binding proteins. Note that the S-100 hierarchy, to which this S-100A1_like group belongs, contains only S-100 EF-hand domains, other EF-hands have been modeled separately. S100 proteins are expressed exclusively in vertebrates, and are implicated in intracellular and extracellular regulatory activities. A unique feature of S100A10 is that it contains mutation in both of the calcium binding sites, making it calcium insensitive. S100A10 has been detected in brain, heart, gastrointestinal tract, kidney, liver, lung, spleen, testes, epidermis, aorta, and thymus. Structural data supports the homo- and hetero-dimeric as well as hetero-tetrameric nature of the protein. S100A10 has multiple binding partners in its calcium free state and is therefore involved in many diverse biological functions.
Probab=97.76 E-value=9.7e-05 Score=66.28 Aligned_cols=65 Identities=12% Similarity=0.358 Sum_probs=48.2
Q ss_pred HHHHHHHHHHccCCCCCCceeHHHHHHHHHH-----hccCChHHHHHHHhhhhcCCCCCceeHHHHHHHHH
Q 003558 205 FAVELFDALTRRRNIQGDTITKDQLREFWDQ-----ISDQSFDSRLQTFFDMVDKDADGRITEDEVREIIS 270 (811)
Q Consensus 205 ~~~~lf~~l~d~d~~~~G~I~~~EF~~~~~~-----l~~~~~~e~l~~~F~~fDkD~dG~It~eE~~~il~ 270 (811)
.+.++|+.+++.++ ++|.|+.+|+..++.. ++....++.++.+|+.+|.|+||.|+++||..++.
T Consensus 9 ~l~~~F~~~D~~dg-~dG~Is~~El~~~l~~~~g~~lg~~~s~~ei~~~~~~~D~~~dg~I~f~eF~~l~~ 78 (94)
T cd05031 9 SLILTFHRYAGKDG-DKNTLSRKELKKLMEKELSEFLKNQKDPMAVDKIMKDLDQNRDGKVNFEEFVSLVA 78 (94)
T ss_pred HHHHHHHHHhccCC-CCCeECHHHHHHHHHHHhHHHhhccccHHHHHHHHHHhCCCCCCcCcHHHHHHHHH
Confidence 35566775443353 1488888888888775 23345677899999999999999999999988875
No 148
>cd05023 S-100A11 S-100A11: S-100A11 domain found in proteins similar to S100A11. S100A11 is a member of the S-100 domain family within EF-hand Ca2+-binding proteins superfamily. Note that the S-100 hierarchy, to which this S-100A11 group belongs, contains only S-100 EF-hand domains, other EF-hands have been modeled separately. S100 proteins exhibit unique patterns of tissue- and cell type-specific expression and have been implicated in the Ca2+-dependent regulation of diverse physiological processes, including cell cycle regulation, differentiation, growth, and metabolic control . S100 proteins have also been associated with a variety of pathological events, including neoplastic transformation and neurodegenerative diseases such as Alzheimer's, usually via over expression of the protein. S100A11 is expressed in smooth muscle and other tissues and involves in calcium-dependent membrane aggregation, which is important for cell vesiculation . As is the case for many other S100 proteins, S
Probab=97.72 E-value=0.00013 Score=64.81 Aligned_cols=63 Identities=16% Similarity=0.341 Sum_probs=49.2
Q ss_pred HHHHHHHHHccCCCCCC-ceeHHHHHHHHHHh-----ccCChHHHHHHHhhhhcCCCCCceeHHHHHHHHH
Q 003558 206 AVELFDALTRRRNIQGD-TITKDQLREFWDQI-----SDQSFDSRLQTFFDMVDKDADGRITEDEVREIIS 270 (811)
Q Consensus 206 ~~~lf~~l~d~d~~~~G-~I~~~EF~~~~~~l-----~~~~~~e~l~~~F~~fDkD~dG~It~eE~~~il~ 270 (811)
+..+|+..+++++ +| +|+.+||..++..- .....++.+..+++.+|.|+||.|+++||..++.
T Consensus 11 l~~~F~~y~~~dg--~~~~Ls~~Elk~ll~~e~~~~~~~~~~~~~~~~ll~~~D~d~DG~I~f~EF~~l~~ 79 (89)
T cd05023 11 LIAVFQKYAGKDG--DSYQLSKTEFLSFMNTELASFTKNQKDPGVLDRMMKKLDLNSDGQLDFQEFLNLIG 79 (89)
T ss_pred HHHHHHHHhccCC--CcCeECHHHHHHHHHHhhhHhhcCCCCHHHHHHHHHHcCCCCCCcCcHHHHHHHHH
Confidence 4556775566665 54 88888888888764 3344567899999999999999999999998885
No 149
>KOG0041 consensus Predicted Ca2+-binding protein, EF-Hand protein superfamily [General function prediction only]
Probab=97.72 E-value=8.2e-05 Score=73.67 Aligned_cols=67 Identities=19% Similarity=0.300 Sum_probs=52.2
Q ss_pred HHHHHHhhhhcCCCCCceeHHHHHHHHHhhhccCCCcchHHHHHHHHHHHHHHcCCCCCCcccHHHHHHHHHhCC
Q 003558 243 SRLQTFFDMVDKDADGRITEDEVREIISLSASANKLSNIQKQAEEYAALIMEELDPDHLGCIMIDNLEMLLLQAP 317 (811)
Q Consensus 243 e~l~~~F~~fDkD~dG~It~eE~~~il~~~~~~~~l~~~~~~~~e~~~~i~~e~D~d~dG~Is~eEF~~~l~~~p 317 (811)
+.+..+|+.||.|.||+|+..||+.+|..... .|..--...+|.++|.|.||+|+|-||.-+.+..-
T Consensus 99 k~~~~~Fk~yDe~rDgfIdl~ELK~mmEKLga--------pQTHL~lK~mikeVded~dgklSfreflLIfrkaa 165 (244)
T KOG0041|consen 99 KDAESMFKQYDEDRDGFIDLMELKRMMEKLGA--------PQTHLGLKNMIKEVDEDFDGKLSFREFLLIFRKAA 165 (244)
T ss_pred HHHHHHHHHhcccccccccHHHHHHHHHHhCC--------chhhHHHHHHHHHhhcccccchhHHHHHHHHHHHh
Confidence 34788999999999999999999999962211 11122234599999999999999999988887553
No 150
>PF08030 NAD_binding_6: Ferric reductase NAD binding domain; InterPro: IPR013121 This entry contains ferric reductase NAD binding proteins.; GO: 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 3A1F_A.
Probab=97.71 E-value=4.3e-05 Score=74.77 Aligned_cols=28 Identities=36% Similarity=0.738 Sum_probs=26.0
Q ss_pred CCeEEEEEeCcCHHHHHHHHHHHHHhcc
Q 003558 722 YEVVLLVGLGIGATPMISIVKDIVNNMK 749 (811)
Q Consensus 722 ~~~vllIagGiGITP~lsil~~l~~~~~ 749 (811)
|+++||||||+||||++|+++++++..+
T Consensus 1 y~~vvlvAGG~GIt~~l~~l~~l~~~~~ 28 (156)
T PF08030_consen 1 YDNVVLVAGGSGITPILPILRDLLQRQN 28 (156)
T ss_dssp SSEEEEEEEGGGHHHHHHHHHHHHHHHH
T ss_pred CCEEEEEecCcCHHHHHHHHHHHHHhhc
Confidence 7899999999999999999999998765
No 151
>cd00052 EH Eps15 homology domain; found in proteins implicated in endocytosis, vesicle transport, and signal transduction. The alignment contains a pair of EF-hand motifs, typically one of them is canonical and binds to Ca2+, while the other may not bind to Ca2+. A hydrophobic binding pocket is formed by residues from both EF-hand motifs. The EH domain binds to proteins containing NPF (class I), [WF]W or SWG (class II), or H[TS]F (class III) sequence motifs.
Probab=97.69 E-value=0.0001 Score=61.09 Aligned_cols=59 Identities=22% Similarity=0.385 Sum_probs=48.2
Q ss_pred HHHHHHHHccCCCCCCceeHHHHHHHHHHhccCChHHHHHHHhhhhcCCCCCceeHHHHHHHHH
Q 003558 207 VELFDALTRRRNIQGDTITKDQLREFWDQISDQSFDSRLQTFFDMVDKDADGRITEDEVREIIS 270 (811)
Q Consensus 207 ~~lf~~l~d~d~~~~G~I~~~EF~~~~~~l~~~~~~e~l~~~F~~fDkD~dG~It~eE~~~il~ 270 (811)
+++|+. .|.++ +|.|+.+|+..++..++ ..++.++.+|+.+|.|++|.|+++||..++.
T Consensus 2 ~~~F~~-~D~~~--~G~i~~~el~~~l~~~g--~~~~~~~~i~~~~d~~~~g~i~~~ef~~~~~ 60 (67)
T cd00052 2 DQIFRS-LDPDG--DGLISGDEARPFLGKSG--LPRSVLAQIWDLADTDKDGKLDKEEFAIAMH 60 (67)
T ss_pred hHHHHH-hCCCC--CCcCcHHHHHHHHHHcC--CCHHHHHHHHHHhcCCCCCcCCHHHHHHHHH
Confidence 457775 56666 89999999999888764 3677889999999999999999999988875
No 152
>cd05029 S-100A6 S-100A6: S-100A6 domain found in proteins similar to S100A6. S100A6 is a member of the S100 domain family within EF-hand Ca2+-binding proteins superfamily. Note that the S-100 hierarchy, to which this S-100A6 group belongs, contains only S-100 EF-hand domains, other EF-hands have been modeled separately. S100 proteins exhibit unique patterns of tissue- and cell type-specific expression and have been implicated in the Ca2+-dependent regulation of diverse physiological processes, including cell cycle regulation, differentiation, growth, and metabolic control . S100A6 is normally expressed in the G1 phase of the cell cycle in neuronal cells. The function of S100A6 remains unclear, but evidence suggests that it is involved in cell cycle regulation and exocytosis. S100A6 may also be involved in tumorigenesis; the protein is overexpressed in several tumors. Ca2+ binding to S100A6 leads to a conformational change in the protein, which exposes a hydrophobic surface for interact
Probab=97.68 E-value=8.1e-05 Score=66.01 Aligned_cols=63 Identities=19% Similarity=0.427 Sum_probs=37.8
Q ss_pred HHHHHHHHccCCCCCCceeHHHHHHHHHH---hccCChHHHHHHHhhhhcCCCCCceeHHHHHHHHH
Q 003558 207 VELFDALTRRRNIQGDTITKDQLREFWDQ---ISDQSFDSRLQTFFDMVDKDADGRITEDEVREIIS 270 (811)
Q Consensus 207 ~~lf~~l~d~d~~~~G~I~~~EF~~~~~~---l~~~~~~e~l~~~F~~fDkD~dG~It~eE~~~il~ 270 (811)
-.+|+..+.+++ ++|+|+.+||..++.. ++....++++..+|+.+|.|+||+|+++||..++.
T Consensus 13 i~~F~~y~~~~~-~~g~Is~~EL~~~l~~~~~lg~k~t~~ev~~m~~~~D~d~dG~Idf~EFv~lm~ 78 (88)
T cd05029 13 VAIFHKYSGREG-DKNTLSKKELKELIQKELTIGSKLQDAEIAKLMEDLDRNKDQEVNFQEYVTFLG 78 (88)
T ss_pred HHHHHHHHccCC-CCCEECHHHHHHHHHHHHhcCCCCCHHHHHHHHHHhcCCCCCCCcHHHHHHHHH
Confidence 345554322222 2466666666666642 46656666677777777777777777777766664
No 153
>PF00036 EF-hand_1: EF hand; InterPro: IPR018248 Many calcium-binding proteins belong to the same evolutionary family and share a type of calcium-binding domain known as the EF-hand. This type of domain consists of a twelve residue loop flanked on both sides by a twelve residue alpha-helical domain. In an EF-hand loop the calcium ion is coordinated in a pentagonal bipyramidal configuration. The six residues involved in the binding are in positions 1, 3, 5, 7, 9 and 12; these residues are denoted by X, Y, Z, -Y, -X and -Z. The invariant Glu or Asp at position 12 provides two oxygens for liganding Ca (bidentate ligand).; PDB: 1BJF_A 1XFW_R 1XFV_O 2K0J_A 2F3Z_A 3BYA_A 1XFU_Q 2R28_B 1ZOT_B 3G43_D ....
Probab=97.62 E-value=5.9e-05 Score=52.32 Aligned_cols=27 Identities=19% Similarity=0.266 Sum_probs=24.3
Q ss_pred HHHHHHHcCCCCCCcccHHHHHHHHHh
Q 003558 289 AALIMEELDPDHLGCIMIDNLEMLLLQ 315 (811)
Q Consensus 289 ~~~i~~e~D~d~dG~Is~eEF~~~l~~ 315 (811)
++.+|+.+|.|+||+|+++||..+|++
T Consensus 2 ~~~~F~~~D~d~dG~I~~~Ef~~~~~~ 28 (29)
T PF00036_consen 2 LKEAFREFDKDGDGKIDFEEFKEMMKK 28 (29)
T ss_dssp HHHHHHHHSTTSSSEEEHHHHHHHHHH
T ss_pred HHHHHHHHCCCCCCcCCHHHHHHHHHh
Confidence 345999999999999999999999975
No 154
>PF13405 EF-hand_6: EF-hand domain; PDB: 2AMI_A 3QRX_A 1W7J_B 1OE9_B 1W7I_B 1KFU_S 1KFX_S 2BL0_B 1Y1X_B 3MSE_B ....
Probab=97.58 E-value=7.9e-05 Score=52.44 Aligned_cols=27 Identities=48% Similarity=0.746 Sum_probs=24.4
Q ss_pred HHHHHhhhhcCCCCCceeHHHHHHHHH
Q 003558 244 RLQTFFDMVDKDADGRITEDEVREIIS 270 (811)
Q Consensus 244 ~l~~~F~~fDkD~dG~It~eE~~~il~ 270 (811)
+++.+|+.||+|+||+|+.+||+.++.
T Consensus 1 ~l~~~F~~~D~d~dG~I~~~el~~~l~ 27 (31)
T PF13405_consen 1 RLREAFKMFDKDGDGFIDFEELRAILR 27 (31)
T ss_dssp HHHHHHHHH-TTSSSEEEHHHHHHHHH
T ss_pred CHHHHHHHHCCCCCCcCcHHHHHHHHH
Confidence 578999999999999999999999986
No 155
>PRK12309 transaldolase/EF-hand domain-containing protein; Provisional
Probab=97.55 E-value=0.00021 Score=80.17 Aligned_cols=56 Identities=29% Similarity=0.398 Sum_probs=48.6
Q ss_pred CChHHHHHHHhhhhcCCCCCceeHHHHHHHHHhhhccCCCcchHHHHHHHHHHHHHHcCCCCCCcccHHHHHHHHHh
Q 003558 239 QSFDSRLQTFFDMVDKDADGRITEDEVREIISLSASANKLSNIQKQAEEYAALIMEELDPDHLGCIMIDNLEMLLLQ 315 (811)
Q Consensus 239 ~~~~e~l~~~F~~fDkD~dG~It~eE~~~il~~~~~~~~l~~~~~~~~e~~~~i~~e~D~d~dG~Is~eEF~~~l~~ 315 (811)
......++.+|+.+|.|+||+|+.+||.. ++.+|+.+|.|+||.|+++||...+..
T Consensus 330 ~~~~~~l~~aF~~~D~dgdG~Is~~E~~~---------------------~~~~F~~~D~d~DG~Is~eEf~~~~~~ 385 (391)
T PRK12309 330 EAFTHAAQEIFRLYDLDGDGFITREEWLG---------------------SDAVFDALDLNHDGKITPEEMRAGLGA 385 (391)
T ss_pred ChhhHHHHHHHHHhCCCCCCcCcHHHHHH---------------------HHHHHHHhCCCCCCCCcHHHHHHHHHH
Confidence 35678899999999999999999999831 133899999999999999999998864
No 156
>KOG4251 consensus Calcium binding protein [General function prediction only]
Probab=97.55 E-value=7.2e-05 Score=75.93 Aligned_cols=135 Identities=12% Similarity=0.041 Sum_probs=93.0
Q ss_pred HHHHHHHHhHccCCCCceehhhhcccccCCC--C---CHHHHHHHHHHHHccCCCCCCceeHHHHHHHHHHhccCC----
Q 003558 170 ANVEKRFDEITASTNGVLPRARFGECIGMNK--D---SKDFAVELFDALTRRRNIQGDTITKDQLREFWDQISDQS---- 240 (811)
Q Consensus 170 ~~l~~~F~~lD~d~dG~Is~~ef~~~lg~~~--~---~~~~~~~lf~~l~d~d~~~~G~I~~~EF~~~~~~l~~~~---- 240 (811)
+.+..+|.+.|.|.||+|+..|+++-+-.+. . +.+.-+.-|++ .|.|+ +|.|+.+||.--+......+
T Consensus 101 rklmviFsKvDVNtDrkisAkEmqrwImektaEHfqeameeSkthFra-VDpdg--DGhvsWdEykvkFlaskghsekev 177 (362)
T KOG4251|consen 101 RKLMVIFSKVDVNTDRKISAKEMQRWIMEKTAEHFQEAMEESKTHFRA-VDPDG--DGHVSWDEYKVKFLASKGHSEKEV 177 (362)
T ss_pred HHHHHHHhhcccCccccccHHHHHHHHHHHHHHHHHHHHhhhhhheee-eCCCC--CCceehhhhhhHHHhhcCcchHHH
Confidence 6788999999999999999999988763221 0 11223344774 67777 99999999976554432111
Q ss_pred ----------hHHHHHHHhhhhcCCCCCceeH---------HHHHHHHHhhhccCCCcchHHHHHHHHHHHHHHcCCCCC
Q 003558 241 ----------FDSRLQTFFDMVDKDADGRITE---------DEVREIISLSASANKLSNIQKQAEEYAALIMEELDPDHL 301 (811)
Q Consensus 241 ----------~~e~l~~~F~~fDkD~dG~It~---------eE~~~il~~~~~~~~l~~~~~~~~e~~~~i~~e~D~d~d 301 (811)
.-++-...|..-|+|.+|+.+. +||..++--.. + ..-+..++..|+..+|+|+|
T Consensus 178 adairlneelkVDeEtqevlenlkdRwyqaDsppadlllteeEflsFLHPEh-----S--rgmLrfmVkeivrdlDqdgD 250 (362)
T KOG4251|consen 178 ADAIRLNEELKVDEETQEVLENLKDRWYQADSPPADLLLTEEEFLSFLHPEH-----S--RGMLRFMVKEIVRDLDQDGD 250 (362)
T ss_pred HHHhhccCcccccHHHHHHHHhhhhhhccccCchhhhhhhHHHHHHHcChHh-----h--hhhHHHHHHHHHHHhccCCC
Confidence 1122234677778888887765 88876663111 1 23456677889999999999
Q ss_pred CcccHHHHHHHHH
Q 003558 302 GCIMIDNLEMLLL 314 (811)
Q Consensus 302 G~Is~eEF~~~l~ 314 (811)
..++..||..+.-
T Consensus 251 kqlSvpeFislpv 263 (362)
T KOG4251|consen 251 KQLSVPEFISLPV 263 (362)
T ss_pred eeecchhhhcCCC
Confidence 9999999987544
No 157
>PF13202 EF-hand_5: EF hand; PDB: 3DD4_A 2Q4U_A 2BE4_A 1UHJ_B 1UHI_A 1UHH_B 1EJ3_B 1UHK_A 2ZFD_A 1UHN_A ....
Probab=97.53 E-value=0.0001 Score=49.32 Aligned_cols=25 Identities=32% Similarity=0.667 Sum_probs=22.5
Q ss_pred HHHHhhhhcCCCCCceeHHHHHHHH
Q 003558 245 LQTFFDMVDKDADGRITEDEVREII 269 (811)
Q Consensus 245 l~~~F~~fDkD~dG~It~eE~~~il 269 (811)
++.+|+.+|+|+||.||.+||++++
T Consensus 1 l~~~F~~~D~d~DG~is~~E~~~~~ 25 (25)
T PF13202_consen 1 LKDAFQQFDTDGDGKISFEEFQRLV 25 (25)
T ss_dssp HHHHHHHHTTTSSSEEEHHHHHHHH
T ss_pred CHHHHHHHcCCCCCcCCHHHHHHHC
Confidence 5789999999999999999999864
No 158
>cd00252 SPARC_EC SPARC_EC; extracellular Ca2+ binding domain (containing 2 EF-hand motifs) of SPARC and related proteins (QR1, SC1/hevin, testican and tsc-36/FRP). SPARC (BM-40) is a multifunctional glycoprotein, a matricellular protein, that functions to regulate cell-matrix interactions; binds to such proteins as collagen and vitronectin and binds to endothelial cells thus inhibiting cellular proliferation. The EC domain interacts with a follistatin-like (FS) domain which appears to stabilize Ca2+ binding. The two EF-hands interact canonically but their conserved disulfide bonds confer a tight association between the EF-hand pair and an acid/amphiphilic N-terminal helix. Proposed active form involves a Ca2+ dependent symmetric homodimerization of EC-FS modules.
Probab=97.49 E-value=0.00029 Score=65.69 Aligned_cols=45 Identities=22% Similarity=0.336 Sum_probs=29.6
Q ss_pred CCceeHHHHHHHHHHhccCChHHHHHHHhhhhcCCCCCceeHHHHHHHH
Q 003558 221 GDTITKDQLREFWDQISDQSFDSRLQTFFDMVDKDADGRITEDEVREII 269 (811)
Q Consensus 221 ~G~I~~~EF~~~~~~l~~~~~~e~l~~~F~~fDkD~dG~It~eE~~~il 269 (811)
+|.|+.+|+..+. ....+..+..+|+.+|.|+||+||.+||...+
T Consensus 62 DG~Ls~~EL~~~~----l~~~e~~~~~f~~~~D~n~Dg~IS~~Ef~~cl 106 (116)
T cd00252 62 DGKLSHHELAPIR----LDPNEHCIKPFFESCDLDKDGSISLDEWCYCF 106 (116)
T ss_pred CCcCCHHHHHHHH----ccchHHHHHHHHHHHCCCCCCCCCHHHHHHHH
Confidence 4555555544433 12234556778888888888888888888777
No 159
>cd00213 S-100 S-100: S-100 domain, which represents the largest family within the superfamily of proteins carrying the Ca-binding EF-hand motif. Note that this S-100 hierarchy contains only S-100 EF-hand domains, other EF-hands have been modeled separately. S100 proteins are expressed exclusively in vertebrates, and are implicated in intracellular and extracellular regulatory activities. Intracellularly, S100 proteins act as Ca-signaling or Ca-buffering proteins. The most unusual characteristic of certain S100 proteins is their occurrence in extracellular space, where they act in a cytokine-like manner through RAGE, the receptor for advanced glycation products. Structural data suggest that many S100 members exist within cells as homo- or heterodimers and even oligomers; oligomerization contributes to their functional diversification. Upon binding calcium, most S100 proteins change conformation to a more open structure exposing a hydrophobic cleft. This hydrophobic surface represents th
Probab=97.44 E-value=0.00039 Score=61.38 Aligned_cols=63 Identities=17% Similarity=0.359 Sum_probs=46.7
Q ss_pred HHHHHHHHHHcc--CCCCCCceeHHHHHHHHHH-hccC----ChHHHHHHHhhhhcCCCCCceeHHHHHHHHH
Q 003558 205 FAVELFDALTRR--RNIQGDTITKDQLREFWDQ-ISDQ----SFDSRLQTFFDMVDKDADGRITEDEVREIIS 270 (811)
Q Consensus 205 ~~~~lf~~l~d~--d~~~~G~I~~~EF~~~~~~-l~~~----~~~e~l~~~F~~fDkD~dG~It~eE~~~il~ 270 (811)
.+.++|.. .|+ ++ +|.|+.+||..++.. ++.. ..++.+..+|+.+|.|++|.|+++||..++.
T Consensus 9 ~l~~~F~~-~D~~~~~--~G~Is~~el~~~l~~~~g~~~~~~~~~~ei~~i~~~~d~~~~g~I~f~eF~~~~~ 78 (88)
T cd00213 9 TIIDVFHK-YSGKEGD--KDTLSKKELKELLETELPNFLKNQKDPEAVDKIMKDLDVNKDGKVDFQEFLVLIG 78 (88)
T ss_pred HHHHHHHH-HhhccCC--CCcCcHHHHHHHHHHHhhhhccCCCCHHHHHHHHHHhccCCCCcCcHHHHHHHHH
Confidence 35566774 455 45 788888888888765 3221 2467788899999999999999999988875
No 160
>cd05030 calgranulins Calgranulins: S-100 domain found in proteins belonging to the Calgranulin subgroup of the S100 family of EF-hand calcium-modulated proteins, including S100A8, S100A9, and S100A12 . Note that the S-100 hierarchy, to which this Calgranulin group belongs, contains only S-100 EF-hand domains, other EF-hands have been modeled separately. These proteins are expressed mainly in granulocytes, and are involved in inflammation, allergy, and neuritogenesis, as well as in host-parasite response. Calgranulins are modulated not only by calcium, but also by other metals such as zinc and copper. Structural data suggested that calgranulins may exist in multiple structural forms, homodimers, as well as hetero-oligomers. For example, the S100A8/S100A9 complex called calprotectin plays important roles in the regulation of inflammatory processes, wound repair, and regulating zinc-dependent enzymes as well as microbial growth.
Probab=97.33 E-value=0.00063 Score=60.30 Aligned_cols=64 Identities=16% Similarity=0.419 Sum_probs=48.8
Q ss_pred HHHHHHHHHccCCCCCCceeHHHHHHHHH-HhccCCh----HHHHHHHhhhhcCCCCCceeHHHHHHHHH
Q 003558 206 AVELFDALTRRRNIQGDTITKDQLREFWD-QISDQSF----DSRLQTFFDMVDKDADGRITEDEVREIIS 270 (811)
Q Consensus 206 ~~~lf~~l~d~d~~~~G~I~~~EF~~~~~-~l~~~~~----~e~l~~~F~~fDkD~dG~It~eE~~~il~ 270 (811)
+..+|...+.+++ .+|.|+.+||..++. .+..... ++.+..+|+.+|.|+||.|+++||..++.
T Consensus 10 ~~~~f~~y~~~~~-~~~~Is~~El~~ll~~~~g~~~t~~~~~~~v~~i~~~~D~d~dG~I~f~eF~~~~~ 78 (88)
T cd05030 10 IINVFHQYSVRKG-HPDTLYKKEFKQLVEKELPNFLKKEKNQKAIDKIFEDLDTNQDGQLSFEEFLVLVI 78 (88)
T ss_pred HHHHHHHHhccCC-CcccCCHHHHHHHHHHHhhHhhccCCCHHHHHHHHHHcCCCCCCcCcHHHHHHHHH
Confidence 3456776444433 368899999998886 3433333 78899999999999999999999998886
No 161
>cd05024 S-100A10 S-100A10: A subgroup of the S-100A10 domain found in proteins similar to S100A10. S100A10 is a member of the S100 family of EF-hand superfamily of calcium-binding proteins. Note that the S-100 hierarchy, to which this S-100A10 group belongs, contains only S-100 EF-hand domains, other EF-hands have been modeled separately. S100 proteins are expressed exclusively in vertebrates, and are implicated in intracellular and extracellular regulatory activities. A unique feature of S100A10 is that it contains mutation in both of the calcium binding sites, making it calcium insensitive. S100A10 has been detected in brain, heart, gastrointestinal tract, kidney, liver, lung, spleen, testes, epidermis, aorta, and thymus. Structural data supports the homo- and hetero-dimeric as well as hetero-tetrameric nature of the protein. S100A10 has multiple binding partners in its calcium free state and is therefore involved in many diverse biological functions.
Probab=97.28 E-value=0.00058 Score=60.47 Aligned_cols=67 Identities=16% Similarity=0.206 Sum_probs=47.9
Q ss_pred HHHHhhhhcCCCCCceeHHHHHHHHHhhhccCCCcchHHHHHHHHHHHHHHcCCCCCCcccHHHHHHHHHh
Q 003558 245 LQTFFDMVDKDADGRITEDEVREIISLSASANKLSNIQKQAEEYAALIMEELDPDHLGCIMIDNLEMLLLQ 315 (811)
Q Consensus 245 l~~~F~~fDkD~dG~It~eE~~~il~~~~~~~~l~~~~~~~~e~~~~i~~e~D~d~dG~Is~eEF~~~l~~ 315 (811)
+-..|..|-.| +|.++..||++++...... -+...+ -.+.++.+|+.+|.|+||.|+|+||..++..
T Consensus 10 lI~~FhkYaG~-~~tLsk~Elk~Ll~~Elp~-~l~~~~--d~~~vd~im~~LD~n~Dg~vdF~EF~~Lv~~ 76 (91)
T cd05024 10 MMLTFHKFAGE-KNYLNRDDLQKLMEKEFSE-FLKNQN--DPMAVDKIMKDLDDCRDGKVGFQSFFSLIAG 76 (91)
T ss_pred HHHHHHHHcCC-CCcCCHHHHHHHHHHHhHH-HHcCCC--CHHHHHHHHHHhCCCCCCcCcHHHHHHHHHH
Confidence 45677777643 5699999999999733221 111101 2456777999999999999999999998854
No 162
>COG2717 Predicted membrane protein [Function unknown]
Probab=97.23 E-value=0.0028 Score=64.41 Aligned_cols=123 Identities=15% Similarity=0.153 Sum_probs=85.7
Q ss_pred chhhHHHHHHHHHHHHHHHHHHhhhccccceeeecCcCccCCCCcccCCCCcchhhhhhcchhHHHHHHHHHHHHHHHhc
Q 003558 441 DNLNFHKVIAVGISIGVGIHAISHLACDFPRLINASEEKYEPMEPYFGDQPKNYWHFVKSVEGVTGIVMVVLMAIAFTLA 520 (811)
Q Consensus 441 ~~~~fHk~ig~~~~~~~~lH~i~~l~~~f~~~~~~~~~~~~~~~~~~~~~~~~y~~~~~~~~~~tGiv~~v~~~i~~~~s 520 (811)
..+.+-|.+|..+++.+++|...|+..+. +++ ....+. +.........|++++++|..+.++|
T Consensus 72 ~l~~~Rr~LGl~af~~~~lH~~~Y~~~~l---------~~~-~~~~~~-------d~~~rpyitiG~iaflll~pLalTS 134 (209)
T COG2717 72 KLIRIRRALGLWAFFYALLHFTAYLVLDL---------GLD-LALLGL-------DLLKRPYITIGMIAFLLLIPLALTS 134 (209)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH---------hcc-HHHhhH-------HHHHhHHHHHHHHHHHHHHHHHHHh
Confidence 35578999999999999999999874221 121 111110 1223344678999999999999999
Q ss_pred chhhhcccCCCCCccccccchhHHHHHHHHHHHHHHHHHHHhhhhhhccccccceeeehhhHHHHHHHHHHHHHHh
Q 003558 521 TPWFRRNKLNLPKPLKKLTGFNAFWYSHHLFVIVYTLLIVHGQYLYLTKKWYKKTTWMYLAIPICLYATERLIRAL 596 (811)
Q Consensus 521 ~~~~Rr~~~~~~~p~~~~~~ye~F~~~H~l~~i~~vll~~H~~~~~~~~~w~~~~~w~y~~~~~~l~~~dr~~R~~ 596 (811)
..+.||+. + ..|...|.+..+++++..+|-.... ... ....+.|.++ .+.+.+.|+.+..
T Consensus 135 ~k~~~rrl-----------G-~rW~~LHrLvYl~~~L~~lH~~~s~--K~~-~~~~vlY~ii-~~~lll~R~~k~~ 194 (209)
T COG2717 135 FKWVRRRL-----------G-KRWKKLHRLVYLALILGALHYLWSV--KID-MPEPVLYAII-FAVLLLLRVTKTR 194 (209)
T ss_pred hHHHHHHH-----------H-HHHHHHHHHHHHHHHHHHHHHHHhc--Ccc-chHHHHHHHH-HHHHHHHHHHHHH
Confidence 99999873 6 7888999999999999999976421 111 1123456543 4677778887765
No 163
>COG0369 CysJ Sulfite reductase, alpha subunit (flavoprotein) [Inorganic ion transport and metabolism]
Probab=97.23 E-value=0.002 Score=75.96 Aligned_cols=91 Identities=15% Similarity=0.128 Sum_probs=55.9
Q ss_pred eeecCcccCCCC--CCeEEEEEEEcC--CccHhHHHHhhhccCCCCCCCcccccccCCCCCCCCEEEEEcccC-CCCCCC
Q 003558 645 EWHPFSITSAPD--DDYLSVHIRTLG--DWTRQLRTVFSEVCRPPPNGISGLLRAEGHNNPDFPRVLIDGPYG-APAQDY 719 (811)
Q Consensus 645 e~HPFSIas~p~--~~~l~~~Ik~~g--~~T~~L~~~~~~~~~~~~~G~sg~~~~~~~~~~~~~~v~idGPyG-~~~~~~ 719 (811)
..|=|||+|+|. .+.++++|..+. .+.+.=.+..+..+..... .++.+.|..+-+ +|..+.
T Consensus 372 kPR~YSIsSs~~~~~~~vhltV~vV~y~~~~~~r~GvcS~~L~~~~~--------------~g~~i~v~v~~n~nf~lp~ 437 (587)
T COG0369 372 KPRLYSIASSPGVSPDEVHLTVGVVRYQAEGRERYGVCSGYLADLLE--------------EGDTIPVFVQPNKNFRLPE 437 (587)
T ss_pred CCeeeEeccCCCCCCCeEEEEEEEEEeccCCCcccccchHHHHhhhc--------------CCCeEEEEeccCCccccCC
Confidence 457799999985 456666665442 2211111222221111111 136777777777 454444
Q ss_pred CCCCeEEEEEeCcCHHHHHHHHHHHHHhcc
Q 003558 720 KEYEVVLLVGLGIGATPMISIVKDIVNNMK 749 (811)
Q Consensus 720 ~~~~~vllIagGiGITP~lsil~~l~~~~~ 749 (811)
....++||||.|+||+||.++++.-..+..
T Consensus 438 ~~~~PiIMIG~GTGIAPFRafvq~r~~~~~ 467 (587)
T COG0369 438 DPETPIIMIGPGTGIAPFRAFVQERAANGA 467 (587)
T ss_pred CCCCceEEEcCCCCchhHHHHHHHHHhccc
Confidence 444899999999999999999998776644
No 164
>KOG0040 consensus Ca2+-binding actin-bundling protein (spectrin), alpha chain (EF-Hand protein superfamily) [Cytoskeleton]
Probab=97.23 E-value=0.0013 Score=80.81 Aligned_cols=134 Identities=14% Similarity=0.199 Sum_probs=99.1
Q ss_pred CcccHHHHHHHHHhHccCCCCceehhhhccccc-------CCC--CCHHHHHHHHHHHHccCCCCCCceeHHHHHHHHHH
Q 003558 165 GGAGWANVEKRFDEITASTNGVLPRARFGECIG-------MNK--DSKDFAVELFDALTRRRNIQGDTITKDQLREFWDQ 235 (811)
Q Consensus 165 ~~~~~~~l~~~F~~lD~d~dG~Is~~ef~~~lg-------~~~--~~~~~~~~lf~~l~d~d~~~~G~I~~~EF~~~~~~ 235 (811)
+++...+..-+|+-+|.+.+|.++.++|..|+. |.+ ..+...+++++ +.|.+. +|+|+..||.++|..
T Consensus 2248 tEe~L~EFs~~fkhFDkek~G~Ldhq~F~sCLrslgY~lpmvEe~~~~p~fe~~ld-~vDP~r--~G~Vsl~dY~afmi~ 2324 (2399)
T KOG0040|consen 2248 TEEQLKEFSMMFKHFDKEKNGRLDHQHFKSCLRSLGYDLPMVEEGEPEPEFEEILD-LVDPNR--DGYVSLQDYMAFMIS 2324 (2399)
T ss_pred CHHHHHHHHHHHHHhchhhccCCcHHHHHHHHHhcCCCCcccccCCCChhHHHHHH-hcCCCC--cCcccHHHHHHHHHh
Confidence 356778999999999999999999999999982 211 02235677777 456555 899999999999875
Q ss_pred hc--cCChHHHHHHHhhhhcCCCCCceeHHHHHHHHHhhhccCCCcchHHHHHHHHHHHHHHcCCC----CCCcccHHHH
Q 003558 236 IS--DQSFDSRLQTFFDMVDKDADGRITEDEVREIISLSASANKLSNIQKQAEEYAALIMEELDPD----HLGCIMIDNL 309 (811)
Q Consensus 236 l~--~~~~~e~l~~~F~~fDkD~dG~It~eE~~~il~~~~~~~~l~~~~~~~~e~~~~i~~e~D~d----~dG~Is~eEF 309 (811)
-- +-..+++++.+|+..|. +.-+|+.+|+.+-|. .++++=.+..|=..+|+. --+.++|.+|
T Consensus 2325 ~ETeNI~s~~eIE~AfraL~a-~~~yvtke~~~~~lt-----------reqaefc~s~m~~~~e~~~~~s~q~~l~y~df 2392 (2399)
T KOG0040|consen 2325 KETENILSSEEIEDAFRALDA-GKPYVTKEELYQNLT-----------REQAEFCMSKMKPYAETSSGRSDQVALDYKDF 2392 (2399)
T ss_pred cccccccchHHHHHHHHHhhc-CCccccHHHHHhcCC-----------HHHHHHHHHHhhhhcccccCCCccccccHHHH
Confidence 42 22445699999999999 888999999876553 445555555555556663 3457999999
Q ss_pred HHHH
Q 003558 310 EMLL 313 (811)
Q Consensus 310 ~~~l 313 (811)
..-+
T Consensus 2393 v~sl 2396 (2399)
T KOG0040|consen 2393 VNSL 2396 (2399)
T ss_pred HHHH
Confidence 8754
No 165
>KOG4065 consensus Uncharacterized conserved protein [Function unknown]
Probab=97.11 E-value=0.0015 Score=59.16 Aligned_cols=71 Identities=17% Similarity=0.162 Sum_probs=54.1
Q ss_pred hHHHHHHHhhhhcCCCCCceeHHHHHHHHHhhhc-------cCCCcchHHHHHHHHHHHHHHcCCCCCCcccHHHHHHH
Q 003558 241 FDSRLQTFFDMVDKDADGRITEDEVREIISLSAS-------ANKLSNIQKQAEEYAALIMEELDPDHLGCIMIDNLEML 312 (811)
Q Consensus 241 ~~e~l~~~F~~fDkD~dG~It~eE~~~il~~~~~-------~~~l~~~~~~~~e~~~~i~~e~D~d~dG~Is~eEF~~~ 312 (811)
+++.----|+|.|.|++|+++--|+.++++-... ...++ .+.+++.+++.+++.-|.|+||+|+|.||.+-
T Consensus 65 peqlqfHYF~MHDldknn~lDGiEl~kAiTH~H~~h~~ghep~Pl~-sE~Ele~~iD~vL~DdDfN~DG~IDYgEflK~ 142 (144)
T KOG4065|consen 65 PEQLQFHYFSMHDLDKNNFLDGIELLKAITHTHDAHDSGHEPVPLS-SEAELERLIDAVLDDDDFNGDGVIDYGEFLKR 142 (144)
T ss_pred HHHHhhhhhhhhccCcCCcchHHHHHHHHHHHhhhhhcCCCCCCCC-CHHHHHHHHHHHhcccccCCCceeeHHHHHhh
Confidence 3333345799999999999999999999972211 11222 25667888999999999999999999999763
No 166
>PRK12309 transaldolase/EF-hand domain-containing protein; Provisional
Probab=96.87 E-value=0.0013 Score=73.88 Aligned_cols=86 Identities=20% Similarity=0.287 Sum_probs=58.9
Q ss_pred cHHHHHHHHHhHccCCCCcee--hhhhcccccCCCCCHHHHHHHHHHHHccCCCCCCceeHHHHHHHHHHhccCChHHHH
Q 003558 168 GWANVEKRFDEITASTNGVLP--RARFGECIGMNKDSKDFAVELFDALTRRRNIQGDTITKDQLREFWDQISDQSFDSRL 245 (811)
Q Consensus 168 ~~~~l~~~F~~lD~d~dG~Is--~~ef~~~lg~~~~~~~~~~~lf~~l~d~d~~~~G~I~~~EF~~~~~~l~~~~~~e~l 245 (811)
..+.+.+-.+.+..|...... .+.+...-|... -+..++.+|+ +.|.++ +|.|+.+||.. +
T Consensus 297 a~ekl~egi~~F~~d~~~L~~~i~~~~~~~~~~~~-~~~~l~~aF~-~~D~dg--dG~Is~~E~~~-------------~ 359 (391)
T PRK12309 297 ASEKLDEGIKGFSKALETLEKLLAHRLARLEGGEA-FTHAAQEIFR-LYDLDG--DGFITREEWLG-------------S 359 (391)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccCh-hhHHHHHHHH-HhCCCC--CCcCcHHHHHH-------------H
Confidence 345555555555543322111 122222224444 5677889999 488888 99999999952 5
Q ss_pred HHHhhhhcCCCCCceeHHHHHHHHH
Q 003558 246 QTFFDMVDKDADGRITEDEVREIIS 270 (811)
Q Consensus 246 ~~~F~~fDkD~dG~It~eE~~~il~ 270 (811)
..+|+.+|.|+||.|+.+||++++.
T Consensus 360 ~~~F~~~D~d~DG~Is~eEf~~~~~ 384 (391)
T PRK12309 360 DAVFDALDLNHDGKITPEEMRAGLG 384 (391)
T ss_pred HHHHHHhCCCCCCCCcHHHHHHHHH
Confidence 7899999999999999999999986
No 167
>KOG1158 consensus NADP/FAD dependent oxidoreductase [Energy production and conversion]
Probab=96.86 E-value=0.0029 Score=74.67 Aligned_cols=28 Identities=14% Similarity=0.385 Sum_probs=24.5
Q ss_pred CCCCeEEEEEeCcCHHHHHHHHHHHHHh
Q 003558 720 KEYEVVLLVGLGIGATPMISIVKDIVNN 747 (811)
Q Consensus 720 ~~~~~vllIagGiGITP~lsil~~l~~~ 747 (811)
+...+++|||-|+||+||.+++++....
T Consensus 489 dp~~PiIMIGpGTGiAPFRgFlq~r~~~ 516 (645)
T KOG1158|consen 489 DPSTPIIMIGPGTGIAPFRGFLQERLFL 516 (645)
T ss_pred CCCCcEEEEcCCCcchhhHHHHHHHHHh
Confidence 3456899999999999999999997765
No 168
>PF13202 EF-hand_5: EF hand; PDB: 3DD4_A 2Q4U_A 2BE4_A 1UHJ_B 1UHI_A 1UHH_B 1EJ3_B 1UHK_A 2ZFD_A 1UHN_A ....
Probab=96.77 E-value=0.0015 Score=43.70 Aligned_cols=23 Identities=22% Similarity=0.365 Sum_probs=21.0
Q ss_pred HHHHHcCCCCCCcccHHHHHHHH
Q 003558 291 LIMEELDPDHLGCIMIDNLEMLL 313 (811)
Q Consensus 291 ~i~~e~D~d~dG~Is~eEF~~~l 313 (811)
.+|+.+|.|+||.|+++||.+++
T Consensus 3 ~~F~~~D~d~DG~is~~E~~~~~ 25 (25)
T PF13202_consen 3 DAFQQFDTDGDGKISFEEFQRLV 25 (25)
T ss_dssp HHHHHHTTTSSSEEEHHHHHHHH
T ss_pred HHHHHHcCCCCCcCCHHHHHHHC
Confidence 48999999999999999999875
No 169
>KOG0038 consensus Ca2+-binding kinase interacting protein (KIP) (EF-Hand protein superfamily) [General function prediction only]
Probab=96.73 E-value=0.0024 Score=60.39 Aligned_cols=89 Identities=18% Similarity=0.229 Sum_probs=66.3
Q ss_pred hHccCCCCceehhhhccccc----CCCCCHHHHHHHHHHHHccCCCCCCceeHHHHHHHHHHhccC-ChHHH----HHHH
Q 003558 178 EITASTNGVLPRARFGECIG----MNKDSKDFAVELFDALTRRRNIQGDTITKDQLREFWDQISDQ-SFDSR----LQTF 248 (811)
Q Consensus 178 ~lD~d~dG~Is~~ef~~~lg----~~~~~~~~~~~lf~~l~d~d~~~~G~I~~~EF~~~~~~l~~~-~~~e~----l~~~ 248 (811)
.+..|++|.+++++|..++. +.+ .+..+.-.|+ +.|-|+ ++.|--+++...+..+.+. ..+++ +.++
T Consensus 79 ~FSeDG~GnlsfddFlDmfSV~sE~AP-rdlK~~YAFk-IYDfd~--D~~i~~~DL~~~l~~lTr~eLs~eEv~~i~ekv 154 (189)
T KOG0038|consen 79 VFSEDGRGNLSFDDFLDMFSVFSEMAP-RDLKAKYAFK-IYDFDG--DEFIGHDDLEKTLTSLTRDELSDEEVELICEKV 154 (189)
T ss_pred HhccCCCCcccHHHHHHHHHHHHhhCh-HHhhhhheeE-EeecCC--CCcccHHHHHHHHHHHhhccCCHHHHHHHHHHH
Confidence 34457899999999998873 333 2233334466 467777 9999999999998887544 23333 4667
Q ss_pred hhhhcCCCCCceeHHHHHHHHH
Q 003558 249 FDMVDKDADGRITEDEVREIIS 270 (811)
Q Consensus 249 F~~fDkD~dG~It~eE~~~il~ 270 (811)
.+..|.||||++++.||.+++.
T Consensus 155 ieEAD~DgDgkl~~~eFe~~i~ 176 (189)
T KOG0038|consen 155 IEEADLDGDGKLSFAEFEHVIL 176 (189)
T ss_pred HHHhcCCCCCcccHHHHHHHHH
Confidence 8889999999999999999985
No 170
>PF14788 EF-hand_10: EF hand; PDB: 1DJW_B 1DJI_B 1DJG_B 1QAS_B 2ISD_B 1DJZ_B 1DJY_B 1DJX_B 1QAT_A 1DJH_A ....
Probab=96.70 E-value=0.0044 Score=48.52 Aligned_cols=48 Identities=17% Similarity=0.341 Sum_probs=40.0
Q ss_pred ceeHHHHHHHHHHhccCChHHHHHHHhhhhcCCCCCceeHHHHHHHHH
Q 003558 223 TITKDQLREFWDQISDQSFDSRLQTFFDMVDKDADGRITEDEVREIIS 270 (811)
Q Consensus 223 ~I~~~EF~~~~~~l~~~~~~e~l~~~F~~fDkD~dG~It~eE~~~il~ 270 (811)
.++|+|...++..+.-...++....+|+.+|++++|++..+||.++..
T Consensus 1 kmsf~Evk~lLk~~NI~~~~~yA~~LFq~~D~s~~g~Le~~Ef~~Fy~ 48 (51)
T PF14788_consen 1 KMSFKEVKKLLKMMNIEMDDEYARQLFQECDKSQSGRLEGEEFEEFYK 48 (51)
T ss_dssp EBEHHHHHHHHHHTT----HHHHHHHHHHH-SSSSSEBEHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHccCcCHHHHHHHHHHhcccCCCCccHHHHHHHHH
Confidence 368999999999998888899999999999999999999999999885
No 171
>PF12763 EF-hand_4: Cytoskeletal-regulatory complex EF hand; PDB: 2QPT_A 2KSP_A 2KFG_A 2JQ6_A 2KFH_A 2KFF_A 1IQ3_A 3FIA_A 2KHN_A 2KGR_A ....
Probab=96.65 E-value=0.0045 Score=56.58 Aligned_cols=90 Identities=22% Similarity=0.323 Sum_probs=57.6
Q ss_pred ChHHHHHHHhhhhcCCCCCceeHHHHHHHHHhhhccCCCcchHHHHHHHHHHHHHHcCCCCCCcccHHHHHHHHHhCCcc
Q 003558 240 SFDSRLQTFFDMVDKDADGRITEDEVREIISLSASANKLSNIQKQAEEYAALIMEELDPDHLGCIMIDNLEMLLLQAPAQ 319 (811)
Q Consensus 240 ~~~e~l~~~F~~fDkD~dG~It~eE~~~il~~~~~~~~l~~~~~~~~e~~~~i~~e~D~d~dG~Is~eEF~~~l~~~p~~ 319 (811)
...++...+|+..|. ++|+|+-++.++++..+ +++ . +....|..-.|.|+||+++++||+..|.-....
T Consensus 7 ~e~~~y~~~F~~l~~-~~g~isg~~a~~~f~~S----~L~--~----~~L~~IW~LaD~~~dG~L~~~EF~iAm~Li~~~ 75 (104)
T PF12763_consen 7 EEKQKYDQIFQSLDP-QDGKISGDQAREFFMKS----GLP--R----DVLAQIWNLADIDNDGKLDFEEFAIAMHLINRK 75 (104)
T ss_dssp CHHHHHHHHHHCTSS-STTEEEHHHHHHHHHHT----TSS--H----HHHHHHHHHH-SSSSSEEEHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhcCC-CCCeEeHHHHHHHHHHc----CCC--H----HHHHHHHhhhcCCCCCcCCHHHHHHHHHHHHHH
Confidence 345678889999884 68999999999988632 333 2 334447777999999999999999988644221
Q ss_pred cccCCCCcccchhccccCCCCCC
Q 003558 320 SVKGGESRNLSHMLSQKLKPTQF 342 (811)
Q Consensus 320 ~~~~~~~~~ls~~~s~~l~~~~~ 342 (811)
.. +....+...|...|.|...
T Consensus 76 ~~--~~~~~lP~~LP~~L~p~s~ 96 (104)
T PF12763_consen 76 LN--GNGKPLPSSLPPSLIPPSK 96 (104)
T ss_dssp HH--HTTS---SSSSGGGSSSCG
T ss_pred hc--CCCCCCchhcCHHHCCCCc
Confidence 10 1122344455555555433
No 172
>KOG0751 consensus Mitochondrial aspartate/glutamate carrier protein Aralar/Citrin (contains EF-hand Ca2+-binding domains) [Energy production and conversion]
Probab=96.64 E-value=0.006 Score=67.99 Aligned_cols=115 Identities=17% Similarity=0.178 Sum_probs=82.2
Q ss_pred cccCchhHHHHHhhhhhhhccCCcccHHHHHHHHHhHccCCCCceehhhhcccccCC---------CCCHHHHHHHHHHH
Q 003558 143 FDRNKSAAAYALKGLKFISKTDGGAGWANVEKRFDEITASTNGVLPRARFGECIGMN---------KDSKDFAVELFDAL 213 (811)
Q Consensus 143 ~dr~~s~a~~alk~l~~i~~~~~~~~~~~l~~~F~~lD~d~dG~Is~~ef~~~lg~~---------~~~~~~~~~lf~~l 213 (811)
-|.+|+|.++..+...|-. .....+ ...+..|+.+|..++|.++.++++++++.. - +.+++...|..
T Consensus 83 aD~tKDglisf~eF~afe~-~lC~pD-al~~~aFqlFDr~~~~~vs~~~~~~if~~t~l~~~~~f~~-d~efI~~~Fg~- 158 (694)
T KOG0751|consen 83 ADQTKDGLISFQEFRAFES-VLCAPD-ALFEVAFQLFDRLGNGEVSFEDVADIFGQTNLHHHIPFNW-DSEFIKLHFGD- 158 (694)
T ss_pred hhhcccccccHHHHHHHHh-hccCch-HHHHHHHHHhcccCCCceehHHHHHHHhccccccCCCccC-CcchHHHHhhh-
Confidence 5677888877776644332 222111 234566777777788999999999887432 2 55777777763
Q ss_pred HccCCCCCCceeHHHHHHHHHHhccCChHHHHHHHhhhhcCCCCCceeHHHHHHHHH
Q 003558 214 TRRRNIQGDTITKDQLREFWDQISDQSFDSRLQTFFDMVDKDADGRITEDEVREIIS 270 (811)
Q Consensus 214 ~d~d~~~~G~I~~~EF~~~~~~l~~~~~~e~l~~~F~~fDkD~dG~It~eE~~~il~ 270 (811)
++ .-.++|.||.+++..+. .|+-+.+|+..|+.++|+||.=+|+.++.
T Consensus 159 -~~----~r~~ny~~f~Q~lh~~~----~E~~~qafr~~d~~~ng~is~Ldfq~imv 206 (694)
T KOG0751|consen 159 -IR----KRHLNYAEFTQFLHEFQ----LEHAEQAFREKDKAKNGFISVLDFQDIMV 206 (694)
T ss_pred -HH----HHhccHHHHHHHHHHHH----HHHHHHHHHHhcccCCCeeeeechHhhhh
Confidence 22 23688999988887763 56788999999999999999999999885
No 173
>KOG0041 consensus Predicted Ca2+-binding protein, EF-Hand protein superfamily [General function prediction only]
Probab=96.35 E-value=0.017 Score=57.61 Aligned_cols=99 Identities=19% Similarity=0.237 Sum_probs=58.5
Q ss_pred HHHHHHHHHccCCCCCCceeHHHHHHHHHHhccCChHHHHHHHhhhhcCCCCCceeHHHHHHHHHhhhccCCCcchHHHH
Q 003558 206 AVELFDALTRRRNIQGDTITKDQLREFWDQISDQSFDSRLQTFFDMVDKDADGRITEDEVREIISLSASANKLSNIQKQA 285 (811)
Q Consensus 206 ~~~lf~~l~d~d~~~~G~I~~~EF~~~~~~l~~~~~~e~l~~~F~~fDkD~dG~It~eE~~~il~~~~~~~~l~~~~~~~ 285 (811)
...+|.. .|.+. ||+||+.|+..+|.+++...+.--++.+...+|.|.||+||+.||--+...... ..+.. +...
T Consensus 101 ~~~~Fk~-yDe~r--DgfIdl~ELK~mmEKLgapQTHL~lK~mikeVded~dgklSfreflLIfrkaaa-gEL~~-ds~~ 175 (244)
T KOG0041|consen 101 AESMFKQ-YDEDR--DGFIDLMELKRMMEKLGAPQTHLGLKNMIKEVDEDFDGKLSFREFLLIFRKAAA-GELQE-DSGL 175 (244)
T ss_pred HHHHHHH-hcccc--cccccHHHHHHHHHHhCCchhhHHHHHHHHHhhcccccchhHHHHHHHHHHHhc-ccccc-chHH
Confidence 3445553 45554 677777777777777765555556778888888888888888887766653332 12221 1111
Q ss_pred HHHHHHHHHHcCCCCCCcccHHHHHH
Q 003558 286 EEYAALIMEELDPDHLGCIMIDNLEM 311 (811)
Q Consensus 286 ~e~~~~i~~e~D~d~dG~Is~eEF~~ 311 (811)
..++ -..++|..+.|.---.+|-.
T Consensus 176 ~~LA--r~~eVDVskeGV~GAknFFe 199 (244)
T KOG0041|consen 176 LRLA--RLSEVDVSKEGVSGAKNFFE 199 (244)
T ss_pred HHHH--HhcccchhhhhhhhHHHHHH
Confidence 2222 23457777777665555443
No 174
>PF14658 EF-hand_9: EF-hand domain
Probab=96.34 E-value=0.013 Score=48.71 Aligned_cols=59 Identities=19% Similarity=0.340 Sum_probs=47.5
Q ss_pred HHHHHHccCCCCCCceeHHHHHHHHHHhcc-CChHHHHHHHhhhhcCCCC-CceeHHHHHHHHH
Q 003558 209 LFDALTRRRNIQGDTITKDQLREFWDQISD-QSFDSRLQTFFDMVDKDAD-GRITEDEVREIIS 270 (811)
Q Consensus 209 lf~~l~d~d~~~~G~I~~~EF~~~~~~l~~-~~~~e~l~~~F~~fDkD~d-G~It~eE~~~il~ 270 (811)
.|++ +|.++ .|.|.-.++..++..+.. ...+++|+.+.+.+|.++. |.|++++|..+|+
T Consensus 3 ~F~~-fD~~~--tG~V~v~~l~~~Lra~~~~~p~e~~Lq~l~~elDP~g~~~~v~~d~F~~iM~ 63 (66)
T PF14658_consen 3 AFDA-FDTQK--TGRVPVSDLITYLRAVTGRSPEESELQDLINELDPEGRDGSVNFDTFLAIMR 63 (66)
T ss_pred chhh-cCCcC--CceEeHHHHHHHHHHHcCCCCcHHHHHHHHHHhCCCCCCceEeHHHHHHHHH
Confidence 4673 66665 788888888888888877 6677888888888888887 8888888888875
No 175
>PF12763 EF-hand_4: Cytoskeletal-regulatory complex EF hand; PDB: 2QPT_A 2KSP_A 2KFG_A 2JQ6_A 2KFH_A 2KFF_A 1IQ3_A 3FIA_A 2KHN_A 2KGR_A ....
Probab=96.09 E-value=0.015 Score=53.28 Aligned_cols=48 Identities=25% Similarity=0.389 Sum_probs=26.3
Q ss_pred CCceeHHHHHHHHHHhccCChHHHHHHHhhhhcCCCCCceeHHHHHHHHH
Q 003558 221 GDTITKDQLREFWDQISDQSFDSRLQTFFDMVDKDADGRITEDEVREIIS 270 (811)
Q Consensus 221 ~G~I~~~EF~~~~~~l~~~~~~e~l~~~F~~fDkD~dG~It~eE~~~il~ 270 (811)
+|.|+-++-..++.+- +.+.+.|..++++.|.|+||+++.+||.-+|.
T Consensus 23 ~g~isg~~a~~~f~~S--~L~~~~L~~IW~LaD~~~dG~L~~~EF~iAm~ 70 (104)
T PF12763_consen 23 DGKISGDQAREFFMKS--GLPRDVLAQIWNLADIDNDGKLDFEEFAIAMH 70 (104)
T ss_dssp TTEEEHHHHHHHHHHT--TSSHHHHHHHHHHH-SSSSSEEEHHHHHHHHH
T ss_pred CCeEeHHHHHHHHHHc--CCCHHHHHHHHhhhcCCCCCcCCHHHHHHHHH
Confidence 4555555555544433 33445566666666666666666666655554
No 176
>PF10591 SPARC_Ca_bdg: Secreted protein acidic and rich in cysteine Ca binding region; InterPro: IPR019577 This entry represents the calcium-binding domain found in SPARC (Secreted Protein Acidic and Rich in Cysteine) and Testican (also known as SPOCK; or SParc/Osteonectin, Cwcv and Kazal-like domains) proteins. SPARC proteins are down-regulated in various tumours and may have a tumour-suppressor function [, ]. Testican-3 appears to be a novel regulator that reduces the activity of matrix metalloproteinase (MMP) in adult T-cell leukemia (ATL) []. This cysteine-rich domain is responsible for the anti-spreading activity of human urothelial cells. This extracellular calcium-binding domain is rich in alpha-helices and contains two EF-hands that each coordinates one Ca2+ ion, forming a helix-loop-helix structure that not only drives the conformation of the protein but is also necessary for biological activity. The anti-spreading activity was dependent on the coordination of Ca2+ by a Glu residue at the Z position of EF-hand 2 []. ; GO: 0005509 calcium ion binding, 0007165 signal transduction, 0005578 proteinaceous extracellular matrix; PDB: 1BMO_A 1SRA_A 2V53_A 1NUB_B.
Probab=96.03 E-value=0.0085 Score=55.72 Aligned_cols=67 Identities=18% Similarity=0.178 Sum_probs=44.4
Q ss_pred HhccCChHHHHHHHhhhhcCCCCCceeHHHHHHHHHhhhccCCCcchHHHHHHHHHHHHHHcCCCCCCcccHHHHHH
Q 003558 235 QISDQSFDSRLQTFFDMVDKDADGRITEDEVREIISLSASANKLSNIQKQAEEYAALIMEELDPDHLGCIMIDNLEM 311 (811)
Q Consensus 235 ~l~~~~~~e~l~~~F~~fDkD~dG~It~eE~~~il~~~~~~~~l~~~~~~~~e~~~~i~~e~D~d~dG~Is~eEF~~ 311 (811)
..........+.-.|...|.|+||.++..|++.+.... .. .+.-++..++..|.|+||.|++.|+..
T Consensus 46 ~~~~~~~~~~~~W~F~~LD~n~d~~L~~~El~~l~~~l------~~----~e~C~~~F~~~CD~n~d~~Is~~EW~~ 112 (113)
T PF10591_consen 46 SSSYSECKRVVHWKFCQLDRNKDGVLDRSELKPLRRPL------MP----PEHCARPFFRSCDVNKDGKISLDEWCN 112 (113)
T ss_dssp HHTGGGGHHHHHHHHHHH--T-SSEE-TTTTGGGGSTT------ST----TGGGHHHHHHHH-TT-SSSEEHHHHHH
T ss_pred ccchhhhhhhhhhhHhhhcCCCCCccCHHHHHHHHHHH------hh----hHHHHHHHHHHcCCCCCCCCCHHHHcc
Confidence 33344556778899999999999999999998775421 11 112344588899999999999999864
No 177
>KOG2562 consensus Protein phosphatase 2 regulatory subunit [RNA processing and modification]
Probab=95.92 E-value=0.025 Score=63.22 Aligned_cols=163 Identities=13% Similarity=0.184 Sum_probs=105.4
Q ss_pred CCCCccccCchhHHHHHhhhhhhhccCCcccHHHHHHHHHhHccCCCCceehhhhccccc----------CCCCCHHH--
Q 003558 138 QPPARFDRNKSAAAYALKGLKFISKTDGGAGWANVEKRFDEITASTNGVLPRARFGECIG----------MNKDSKDF-- 205 (811)
Q Consensus 138 ~~~~~~dr~~s~a~~alk~l~~i~~~~~~~~~~~l~~~F~~lD~d~dG~Is~~ef~~~lg----------~~~~~~~~-- 205 (811)
..|++++.+..|-+.+.+...+-.... ......+.+.+..++..+.|.+..++|...++ +.. .+++
T Consensus 143 ~~f~k~~~d~~g~it~~~Fi~~~~~~~-~l~~t~~~~~v~~l~~~~~~yl~q~df~~~Lqeli~Thpl~~l~~-~pEf~~ 220 (493)
T KOG2562|consen 143 STFRKIDGDDTGHITRDKFINYWMRGL-MLTHTRLEQFVNLLIQAGCSYLRQDDFKPYLQELIATHPLEFLDE-EPEFQE 220 (493)
T ss_pred hhhhhhccCcCCceeHHHHHHHHHhhh-hHHHHHHHHHHHHHhccCccceeccccHHHHHHHHhcCCchhhcc-ChhHHH
Confidence 455677888888888777766555433 23446788889999988999999999887662 111 2333
Q ss_pred ------HHHHHHHHHccCCCCCCceeHHHHHHH-----HHHhccCC---------hHHHHHHH---hhhhcCCCCCceeH
Q 003558 206 ------AVELFDALTRRRNIQGDTITKDQLREF-----WDQISDQS---------FDSRLQTF---FDMVDKDADGRITE 262 (811)
Q Consensus 206 ------~~~lf~~l~d~d~~~~G~I~~~EF~~~-----~~~l~~~~---------~~e~l~~~---F~~fDkD~dG~It~ 262 (811)
++++|= +.++.+ .|+|+..|.+.. +..+.+.. .-+....+ |-..|+|.||.|+.
T Consensus 221 ~Y~~tvi~rIFy-~~nrs~--tG~iti~el~~snll~~l~~l~eEed~nq~~~~FS~e~f~viy~kFweLD~Dhd~lidk 297 (493)
T KOG2562|consen 221 RYAETVIQRIFY-YLNRSR--TGRITIQELLRSNLLDALLELDEEEDINQVTRYFSYEHFYVIYCKFWELDTDHDGLIDK 297 (493)
T ss_pred HHHHHHhhhhhe-eeCCcc--CCceeHHHHHHhHHHHHHHHHHHHhhhhhhhhheeHHHHHHHHHHHhhhccccccccCH
Confidence 234443 234444 899999997543 33332211 12223333 88899999999999
Q ss_pred HHHHHHHHhhhccCCCcchHHHHHHHHHHHHH----HcCCCCCCcccHHHHHHHHHhC
Q 003558 263 DEVREIISLSASANKLSNIQKQAEEYAALIME----ELDPDHLGCIMIDNLEMLLLQA 316 (811)
Q Consensus 263 eE~~~il~~~~~~~~l~~~~~~~~e~~~~i~~----e~D~d~dG~Is~eEF~~~l~~~ 316 (811)
+|++..-. ..+ ...+++.||. ..-.-.+|+|+|++|..++...
T Consensus 298 ~~L~ry~d-----~tl------t~~ivdRIFs~v~r~~~~~~eGrmdykdFv~FilA~ 344 (493)
T KOG2562|consen 298 EDLKRYGD-----HTL------TERIVDRIFSQVPRGFTVKVEGRMDYKDFVDFILAE 344 (493)
T ss_pred HHHHHHhc-----cch------hhHHHHHHHhhccccceeeecCcccHHHHHHHHHHh
Confidence 99887653 111 1345566777 3445678999999999987644
No 178
>PF13405 EF-hand_6: EF-hand domain; PDB: 2AMI_A 3QRX_A 1W7J_B 1OE9_B 1W7I_B 1KFU_S 1KFX_S 2BL0_B 1Y1X_B 3MSE_B ....
Probab=95.87 E-value=0.0093 Score=41.82 Aligned_cols=26 Identities=23% Similarity=0.299 Sum_probs=22.6
Q ss_pred HHHHHHcCCCCCCcccHHHHHHHHHh
Q 003558 290 ALIMEELDPDHLGCIMIDNLEMLLLQ 315 (811)
Q Consensus 290 ~~i~~e~D~d~dG~Is~eEF~~~l~~ 315 (811)
+.+|+.+|.|+||+|+.+||..+|++
T Consensus 3 ~~~F~~~D~d~dG~I~~~el~~~l~~ 28 (31)
T PF13405_consen 3 REAFKMFDKDGDGFIDFEELRAILRK 28 (31)
T ss_dssp HHHHHHH-TTSSSEEEHHHHHHHHHH
T ss_pred HHHHHHHCCCCCCcCcHHHHHHHHHH
Confidence 44899999999999999999999984
No 179
>cd05024 S-100A10 S-100A10: A subgroup of the S-100A10 domain found in proteins similar to S100A10. S100A10 is a member of the S100 family of EF-hand superfamily of calcium-binding proteins. Note that the S-100 hierarchy, to which this S-100A10 group belongs, contains only S-100 EF-hand domains, other EF-hands have been modeled separately. S100 proteins are expressed exclusively in vertebrates, and are implicated in intracellular and extracellular regulatory activities. A unique feature of S100A10 is that it contains mutation in both of the calcium binding sites, making it calcium insensitive. S100A10 has been detected in brain, heart, gastrointestinal tract, kidney, liver, lung, spleen, testes, epidermis, aorta, and thymus. Structural data supports the homo- and hetero-dimeric as well as hetero-tetrameric nature of the protein. S100A10 has multiple binding partners in its calcium free state and is therefore involved in many diverse biological functions.
Probab=95.84 E-value=0.02 Score=50.88 Aligned_cols=63 Identities=6% Similarity=0.090 Sum_probs=33.2
Q ss_pred HHHHHHHHHhHccCCCCceehhhhccccc--------CCCCCHHHHHHHHHHHHccCCCCCCceeHHHHHHHHHHh
Q 003558 169 WANVEKRFDEITASTNGVLPRARFGECIG--------MNKDSKDFAVELFDALTRRRNIQGDTITKDQLREFWDQI 236 (811)
Q Consensus 169 ~~~l~~~F~~lD~d~dG~Is~~ef~~~lg--------~~~~~~~~~~~lf~~l~d~d~~~~G~I~~~EF~~~~~~l 236 (811)
+..+-..|.+++. ++++++..||++.+. ... ++..++++|+.+ |.++ ||.|||+||...+..+
T Consensus 7 i~~lI~~FhkYaG-~~~tLsk~Elk~Ll~~Elp~~l~~~~-d~~~vd~im~~L-D~n~--Dg~vdF~EF~~Lv~~l 77 (91)
T cd05024 7 MEKMMLTFHKFAG-EKNYLNRDDLQKLMEKEFSEFLKNQN-DPMAVDKIMKDL-DDCR--DGKVGFQSFFSLIAGL 77 (91)
T ss_pred HHHHHHHHHHHcC-CCCcCCHHHHHHHHHHHhHHHHcCCC-CHHHHHHHHHHh-CCCC--CCcCcHHHHHHHHHHH
Confidence 3456667777774 345777777776651 112 334455555432 2222 5555555555554443
No 180
>PF14788 EF-hand_10: EF hand; PDB: 1DJW_B 1DJI_B 1DJG_B 1QAS_B 2ISD_B 1DJZ_B 1DJY_B 1DJX_B 1QAT_A 1DJH_A ....
Probab=95.74 E-value=0.03 Score=43.99 Aligned_cols=49 Identities=18% Similarity=0.411 Sum_probs=37.1
Q ss_pred ceeHHHHHHHHHhhhccCCCcchHHHHHHHHHHHHHHcCCCCCCcccHHHHHHHHHh
Q 003558 259 RITEDEVREIISLSASANKLSNIQKQAEEYAALIMEELDPDHLGCIMIDNLEMLLLQ 315 (811)
Q Consensus 259 ~It~eE~~~il~~~~~~~~l~~~~~~~~e~~~~i~~e~D~d~dG~Is~eEF~~~l~~ 315 (811)
+++++|++.+++.. .+ +.-+++|..+|++.|.+++|.++-+||+.+.+.
T Consensus 1 kmsf~Evk~lLk~~----NI----~~~~~yA~~LFq~~D~s~~g~Le~~Ef~~Fy~~ 49 (51)
T PF14788_consen 1 KMSFKEVKKLLKMM----NI----EMDDEYARQLFQECDKSQSGRLEGEEFEEFYKR 49 (51)
T ss_dssp EBEHHHHHHHHHHT----T--------HHHHHHHHHHH-SSSSSEBEHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHH----cc----CcCHHHHHHHHHHhcccCCCCccHHHHHHHHHH
Confidence 47899999999732 11 123678999999999999999999999988753
No 181
>KOG0046 consensus Ca2+-binding actin-bundling protein (fimbrin/plastin), EF-Hand protein superfamily [Cytoskeleton]
Probab=95.72 E-value=0.024 Score=64.00 Aligned_cols=67 Identities=19% Similarity=0.226 Sum_probs=53.7
Q ss_pred HHHHHhhhhcCCCCCceeHHHHHHHHHhhhccCCCcchHHHHHHHHHHHHHHcCCCCCCcccHHHHHHHHHhC
Q 003558 244 RLQTFFDMVDKDADGRITEDEVREIISLSASANKLSNIQKQAEEYAALIMEELDPDHLGCIMIDNLEMLLLQA 316 (811)
Q Consensus 244 ~l~~~F~~fDkD~dG~It~eE~~~il~~~~~~~~l~~~~~~~~e~~~~i~~e~D~d~dG~Is~eEF~~~l~~~ 316 (811)
.++..|...| |++|+|+..|+..++....... .-..+|+++.++.+.++|.+|.|+||||..++..-
T Consensus 20 ~l~~kF~~~d-~~~G~v~~~~l~~~f~k~~~~~-----g~~~~eei~~~l~~~~~~~~g~v~fe~f~~~~~~l 86 (627)
T KOG0046|consen 20 ELKEKFNKLD-DQKGYVTVYELPDAFKKAKLPL-----GYFVREEIKEILGEVGVDADGRVEFEEFVGIFLNL 86 (627)
T ss_pred HHHHHHHhhc-CCCCeeehHHhHHHHHHhcccc-----cchhHHHHHHHHhccCCCcCCccCHHHHHHHHHhh
Confidence 4778899999 9999999999999996332211 22456778889999999999999999999977543
No 182
>KOG1159 consensus NADP-dependent flavoprotein reductase [Energy production and conversion]
Probab=95.67 E-value=0.021 Score=64.14 Aligned_cols=92 Identities=17% Similarity=0.240 Sum_probs=56.5
Q ss_pred EeccCCCCeeecCcccCCCCCCeEEEEEEEcCCccHhHH----HHhhhccCCCCCCCcccccccCCCCCCCCEEEEEccc
Q 003558 637 NCAAVSPFEWHPFSITSAPDDDYLSVHIRTLGDWTRQLR----TVFSEVCRPPPNGISGLLRAEGHNNPDFPRVLIDGPY 712 (811)
Q Consensus 637 ~~p~~s~~e~HPFSIas~p~~~~l~~~Ik~~g~~T~~L~----~~~~~~~~~~~~G~sg~~~~~~~~~~~~~~v~idGPy 712 (811)
.+|.+ ..|.|||+|.|+...+++.|-.+.- +..|+ ++.++-...+++| +.+.+.=--
T Consensus 362 ~~P~I---rPR~fSIas~~~~~~leL~VAiV~y-kT~l~~pRrGlCS~wl~sL~~g---------------~~i~~~v~~ 422 (574)
T KOG1159|consen 362 LLPVI---RPRAFSIASSPGAHHLELLVAIVEY-KTILKEPRRGLCSNWLASLKPG---------------DEIPIKVRP 422 (574)
T ss_pred hcccc---ccceeeeccCCCCCceeEEEEEEEE-eeeccccccchhHHHHhhcCCC---------------CeEEEEEec
Confidence 35555 5789999999988888877755431 11111 1222222233444 334333334
Q ss_pred CCCCCCCCCCCeEEEEEeCcCHHHHHHHHHHHHHh
Q 003558 713 GAPAQDYKEYEVVLLVGLGIGATPMISIVKDIVNN 747 (811)
Q Consensus 713 G~~~~~~~~~~~vllIagGiGITP~lsil~~l~~~ 747 (811)
|....+.....+++|||-|+||||+.|++++-+.+
T Consensus 423 g~l~~p~~~~~PlImVGPGTGvAPfRa~i~er~~q 457 (574)
T KOG1159|consen 423 GTLYFPSDLNKPLIMVGPGTGVAPFRALIQERIYQ 457 (574)
T ss_pred CccccCCCCCCCeEEEcCCCCcccHHHHHHHHHhh
Confidence 44433333456899999999999999999986643
No 183
>COG2375 ViuB Siderophore-interacting protein [Inorganic ion transport and metabolism]
Probab=95.43 E-value=0.23 Score=52.80 Aligned_cols=126 Identities=13% Similarity=0.160 Sum_probs=88.4
Q ss_pred ccceEEEEEEEecCCEEEEEEEcCCCccc---C-CCcEEEEEeccCCC--------------------CeeecCcccCC-
Q 003558 600 IKAVSIQKVAVYPGNVLALHMSKPDRFRY---K-SGQYMFVNCAAVSP--------------------FEWHPFSITSA- 654 (811)
Q Consensus 600 ~~~~~i~~v~~~~~~v~~l~l~~p~~~~~---~-pGQyv~l~~p~~s~--------------------~e~HPFSIas~- 654 (811)
.+.++|+.++.++++.++++|..|....+ . .+||+.|.+|..+. .-.|+|||.+.
T Consensus 17 ~~~~~V~~~~~lsP~m~Rv~~~g~~l~~f~~~~~~d~~ikL~fp~~~~~~~~~~~~~~~~~~~~~~~r~~~R~YTiR~~d 96 (265)
T COG2375 17 LHEATVTRVTQLSPHMVRVVLGGEGLAGFASLGFGDQHIKLFFPPPDGDPPRLPVLEERGAVPPGAQRPPQRTYTIRAVD 96 (265)
T ss_pred ceEEEEEEEEecCCCeEEEEEecccccccccccCCCceeEEEecCccCCCCCCcccccccccCccccCCCcccceeeeec
Confidence 46788999999999999999998874333 3 45599999986521 12688999754
Q ss_pred CCCCeEEEEEEEcC---CccHhHHHHhhhccCCCCCCCcccccccCCCCCCCCEEEEEcccCCCCCCCCCCCeEEEEEeC
Q 003558 655 PDDDYLSVHIRTLG---DWTRQLRTVFSEVCRPPPNGISGLLRAEGHNNPDFPRVLIDGPYGAPAQDYKEYEVVLLVGLG 731 (811)
Q Consensus 655 p~~~~l~~~Ik~~g---~~T~~L~~~~~~~~~~~~~G~sg~~~~~~~~~~~~~~v~idGPyG~~~~~~~~~~~vllIagG 731 (811)
++.+.+.+=+=..| ..+..-.+ .++ ++++.|-||-|...+ ...++.++|||==
T Consensus 97 ~~~~e~~vDfVlH~~~gpas~WA~~--------a~~---------------GD~l~i~GP~g~~~p-~~~~~~~lLigDe 152 (265)
T COG2375 97 AAAGELDVDFVLHGEGGPASRWART--------AQP---------------GDTLTIMGPRGSLVP-PEAADWYLLIGDE 152 (265)
T ss_pred ccccEEEEEEEEcCCCCcchhhHhh--------CCC---------------CCEEEEeCCCCCCCC-CCCcceEEEeccc
Confidence 34455544333332 11111111 133 489999999999654 4578899999999
Q ss_pred cCHHHHHHHHHHHHHhcc
Q 003558 732 IGATPMISIVKDIVNNMK 749 (811)
Q Consensus 732 iGITP~lsil~~l~~~~~ 749 (811)
+++..+..||+++-...+
T Consensus 153 tAlPAIa~iLE~lp~~~~ 170 (265)
T COG2375 153 TALPAIARILETLPADTP 170 (265)
T ss_pred cchHHHHHHHHhCCCCCc
Confidence 999999999998776543
No 184
>smart00054 EFh EF-hand, calcium binding motif. EF-hands are calcium-binding motifs that occur at least in pairs. Links between disease states and genes encoding EF-hands, particularly the S100 subclass, are emerging. Each motif consists of a 12 residue loop flanked on either side by a 12 residue alpha-helix. EF-hands undergo a conformational change unpon binding calcium ions.
Probab=95.09 E-value=0.023 Score=37.44 Aligned_cols=26 Identities=35% Similarity=0.736 Sum_probs=23.6
Q ss_pred HHHHhhhhcCCCCCceeHHHHHHHHH
Q 003558 245 LQTFFDMVDKDADGRITEDEVREIIS 270 (811)
Q Consensus 245 l~~~F~~fDkD~dG~It~eE~~~il~ 270 (811)
++.+|+.+|.|++|.|+.+||..++.
T Consensus 2 ~~~~f~~~d~~~~g~i~~~e~~~~~~ 27 (29)
T smart00054 2 LKEAFRLFDKDGDGKIDFEEFKDLLK 27 (29)
T ss_pred HHHHHHHHCCCCCCcEeHHHHHHHHH
Confidence 67899999999999999999998875
No 185
>KOG3866 consensus DNA-binding protein of the nucleobindin family [General function prediction only]
Probab=94.80 E-value=0.05 Score=57.57 Aligned_cols=88 Identities=20% Similarity=0.368 Sum_probs=62.2
Q ss_pred eHHHHHHHHHHhccCChH-HHHHHHhhhhcCCCCCceeHHHHHHHHHhhhccC-CCcchHHHHHH-------HHHHHHHH
Q 003558 225 TKDQLREFWDQISDQSFD-SRLQTFFDMVDKDADGRITEDEVREIISLSASAN-KLSNIQKQAEE-------YAALIMEE 295 (811)
Q Consensus 225 ~~~EF~~~~~~l~~~~~~-e~l~~~F~~fDkD~dG~It~eE~~~il~~~~~~~-~l~~~~~~~~e-------~~~~i~~e 295 (811)
+.+++.++|.......++ -.-+.+|...|.|+||+++..|+..+++...... .-.+.++.+.+ .-+.+|++
T Consensus 225 SkdQLkEVWEE~DgLdpn~fdPKTFF~LHD~NsDGfldeqELEaLFtkELEKvYdpkNeeDDM~EmeEErlRMREHVMk~ 304 (442)
T KOG3866|consen 225 SKDQLKEVWEESDGLDPNQFDPKTFFALHDLNSDGFLDEQELEALFTKELEKVYDPKNEEDDMKEMEEERLRMREHVMKQ 304 (442)
T ss_pred cHHHHHHHHHHhcCCCcccCCcchheeeeccCCcccccHHHHHHHHHHHHHHhcCCCCcchHHHHHHHHHHHHHHHHHHh
Confidence 678899999876433322 2357899999999999999999999887432211 11111222222 34678999
Q ss_pred cCCCCCCcccHHHHHHH
Q 003558 296 LDPDHLGCIMIDNLEML 312 (811)
Q Consensus 296 ~D~d~dG~Is~eEF~~~ 312 (811)
+|.|.|--|+.+||..-
T Consensus 305 vDtNqDRlvtleEFL~~ 321 (442)
T KOG3866|consen 305 VDTNQDRLVTLEEFLND 321 (442)
T ss_pred cccchhhhhhHHHHHhh
Confidence 99999999999999764
No 186
>KOG0169 consensus Phosphoinositide-specific phospholipase C [Signal transduction mechanisms]
Probab=94.31 E-value=0.53 Score=56.07 Aligned_cols=162 Identities=14% Similarity=0.233 Sum_probs=109.6
Q ss_pred cccCchhHHHHHhhhhhhhccCC-----cccHHHHHHHHHhHccCCCCceehhhhccccc---CCCCCHHHHHHHHHHHH
Q 003558 143 FDRNKSAAAYALKGLKFISKTDG-----GAGWANVEKRFDEITASTNGVLPRARFGECIG---MNKDSKDFAVELFDALT 214 (811)
Q Consensus 143 ~dr~~s~a~~alk~l~~i~~~~~-----~~~~~~l~~~F~~lD~d~dG~Is~~ef~~~lg---~~~~~~~~~~~lf~~l~ 214 (811)
...++..|...-.+++.+.+... +..-.++...|+..|++++|.+++.+-..++. +.- ....+..+|+..
T Consensus 104 ~a~s~~~a~~wV~gl~~l~s~~~~~~~~~~~~~wi~~~~~~ad~~~~~~~~~~~~~~~~~~~n~~l-~~~~~~~~f~e~- 181 (746)
T KOG0169|consen 104 IANSKEDANIWVSGLRKLISRSKSMRQRSRREHWIHSIFQEADKNKNGHMSFDEVLDLLKQLNVQL-SESKARRLFKES- 181 (746)
T ss_pred cCCCHHHHHHHhhhHHHHHhccchhhhcchHHHHHHHHHHHHccccccccchhhHHHHHHHHHHhh-hHHHHHHHHHHH-
Confidence 34444555555566665554322 24447899999999999999999999888762 222 345667778754
Q ss_pred ccCCCCCCceeHHHHHHHHHHhccCChHHHHHHHhhhhcCCCCCceeHHHHHHHHHhhhccCCCcchHHHHHHHHHHHHH
Q 003558 215 RRRNIQGDTITKDQLREFWDQISDQSFDSRLQTFFDMVDKDADGRITEDEVREIISLSASANKLSNIQKQAEEYAALIME 294 (811)
Q Consensus 215 d~d~~~~G~I~~~EF~~~~~~l~~~~~~e~l~~~F~~fDkD~dG~It~eE~~~il~~~~~~~~l~~~~~~~~e~~~~i~~ 294 (811)
+. ..++.+..++|..+...+.... ++...|..+=.+ .++.+.+++.+++.......... .+.++.|++
T Consensus 182 ~~--~~~~k~~~~~~~~~~~~~~~rp---ev~~~f~~~s~~-~~~ls~~~L~~Fl~~~q~e~~~~------~~~ae~ii~ 249 (746)
T KOG0169|consen 182 DN--SQTGKLEEEEFVKFRKELTKRP---EVYFLFVQYSHG-KEYLSTDDLLRFLEEEQGEDGAT------LDEAEEIIE 249 (746)
T ss_pred Hh--hccceehHHHHHHHHHhhccCc---hHHHHHHHHhCC-CCccCHHHHHHHHHHhccccccc------HHHHHHHHH
Confidence 33 3379999999999988876544 577777776544 89999999999997553222222 233444555
Q ss_pred HcCC----CCCCcccHHHHHHHHHhCCc
Q 003558 295 ELDP----DHLGCIMIDNLEMLLLQAPA 318 (811)
Q Consensus 295 e~D~----d~dG~Is~eEF~~~l~~~p~ 318 (811)
++-+ -..+.++++.|...|.....
T Consensus 250 ~~e~~k~~~~~~~l~ldgF~~yL~S~~~ 277 (746)
T KOG0169|consen 250 RYEPSKEFRRHGLLSLDGFTRYLFSPDC 277 (746)
T ss_pred HhhhhhhccccceecHHHHHHHhcCccC
Confidence 4433 34566999999998876544
No 187
>PF08021 FAD_binding_9: Siderophore-interacting FAD-binding domain; InterPro: IPR013113 Proteins in this entry are siderophore-interacting FAD-binding proteins. This entry includes the vibriobactin utilization protein ViuB, which is involved in the removal of iron from iron-vibriobactin complexes, as well as several hypothetical proteins.; PDB: 2GPJ_A.
Probab=94.10 E-value=0.25 Score=46.26 Aligned_cols=89 Identities=18% Similarity=0.274 Sum_probs=52.0
Q ss_pred EEEEEEEecCCEEEEEEEcCC--Ccc-cCCCcEEEEEeccCCCC---------------------eeecCcccCC-CCCC
Q 003558 604 SIQKVAVYPGNVLALHMSKPD--RFR-YKSGQYMFVNCAAVSPF---------------------EWHPFSITSA-PDDD 658 (811)
Q Consensus 604 ~i~~v~~~~~~v~~l~l~~p~--~~~-~~pGQyv~l~~p~~s~~---------------------e~HPFSIas~-p~~~ 658 (811)
+|+.++.++++.++|++..+. .+. ..+|||+.|.+|..+.- ..+.|||.+. |+.+
T Consensus 1 ~V~~~~~ltP~~~Rv~l~g~~l~~~~~~~~d~~ikL~~p~~~~~~~~~~~~~~~~~~~~~~~~~p~~R~YTvR~~d~~~~ 80 (117)
T PF08021_consen 1 TVVRVERLTPHMRRVTLGGEDLAGFPSWGPDQHIKLFFPPPGGDPPLPPPLDEGGYRWPPDEQRPVMRTYTVRRFDPETG 80 (117)
T ss_dssp EEEEEEEEETTEEEEEEESGGGTT--S--TT-EEEEEE--TTS----------------------EEEEEE--EEETT--
T ss_pred CEEEEEECCCCEEEEEEECCCcccCccCCCCcEEEEEeCCCCCCccccccccccccccccccCCCCCCCcCEeeEcCCCC
Confidence 478899999999999999875 233 46999999999875321 4678999776 5667
Q ss_pred eEEEEEEEcCC---ccHhHHHHhhhccCCCCCCCcccccccCCCCCCCCEEEEEcccCCC
Q 003558 659 YLSVHIRTLGD---WTRQLRTVFSEVCRPPPNGISGLLRAEGHNNPDFPRVLIDGPYGAP 715 (811)
Q Consensus 659 ~l~~~Ik~~g~---~T~~L~~~~~~~~~~~~~G~sg~~~~~~~~~~~~~~v~idGPyG~~ 715 (811)
.+.|-+-..|+ -+...... ++| ++|.|-||-|.|
T Consensus 81 ~l~iDfv~Hg~~Gpas~WA~~A--------~pG---------------d~v~v~gP~g~~ 117 (117)
T PF08021_consen 81 ELDIDFVLHGDEGPASRWARSA--------RPG---------------DRVGVTGPRGSF 117 (117)
T ss_dssp EEEEEEE--SS--HHHHHHHH----------TT----------------EEEEEEEE---
T ss_pred EEEEEEEECCCCCchHHHHhhC--------CCC---------------CEEEEeCCCCCC
Confidence 88887776665 23222221 344 899999998865
No 188
>PF10591 SPARC_Ca_bdg: Secreted protein acidic and rich in cysteine Ca binding region; InterPro: IPR019577 This entry represents the calcium-binding domain found in SPARC (Secreted Protein Acidic and Rich in Cysteine) and Testican (also known as SPOCK; or SParc/Osteonectin, Cwcv and Kazal-like domains) proteins. SPARC proteins are down-regulated in various tumours and may have a tumour-suppressor function [, ]. Testican-3 appears to be a novel regulator that reduces the activity of matrix metalloproteinase (MMP) in adult T-cell leukemia (ATL) []. This cysteine-rich domain is responsible for the anti-spreading activity of human urothelial cells. This extracellular calcium-binding domain is rich in alpha-helices and contains two EF-hands that each coordinates one Ca2+ ion, forming a helix-loop-helix structure that not only drives the conformation of the protein but is also necessary for biological activity. The anti-spreading activity was dependent on the coordination of Ca2+ by a Glu residue at the Z position of EF-hand 2 []. ; GO: 0005509 calcium ion binding, 0007165 signal transduction, 0005578 proteinaceous extracellular matrix; PDB: 1BMO_A 1SRA_A 2V53_A 1NUB_B.
Probab=93.93 E-value=0.15 Score=47.36 Aligned_cols=32 Identities=19% Similarity=0.221 Sum_probs=23.2
Q ss_pred cccHHHHHHHHHhHccCCCCceehhhhccccc
Q 003558 166 GAGWANVEKRFDEITASTNGVLPRARFGECIG 197 (811)
Q Consensus 166 ~~~~~~l~~~F~~lD~d~dG~Is~~ef~~~lg 197 (811)
......+.-.|..+|.|+||.|+..|+..+..
T Consensus 50 ~~~~~~~~W~F~~LD~n~d~~L~~~El~~l~~ 81 (113)
T PF10591_consen 50 SECKRVVHWKFCQLDRNKDGVLDRSELKPLRR 81 (113)
T ss_dssp GGGHHHHHHHHHHH--T-SSEE-TTTTGGGGS
T ss_pred hhhhhhhhhhHhhhcCCCCCccCHHHHHHHHH
Confidence 34557888999999999999999999987765
No 189
>smart00054 EFh EF-hand, calcium binding motif. EF-hands are calcium-binding motifs that occur at least in pairs. Links between disease states and genes encoding EF-hands, particularly the S100 subclass, are emerging. Each motif consists of a 12 residue loop flanked on either side by a 12 residue alpha-helix. EF-hands undergo a conformational change unpon binding calcium ions.
Probab=93.91 E-value=0.073 Score=34.91 Aligned_cols=26 Identities=23% Similarity=0.206 Sum_probs=23.0
Q ss_pred HHHHHHcCCCCCCcccHHHHHHHHHh
Q 003558 290 ALIMEELDPDHLGCIMIDNLEMLLLQ 315 (811)
Q Consensus 290 ~~i~~e~D~d~dG~Is~eEF~~~l~~ 315 (811)
+.+|+.+|.|++|.|+++||..+++.
T Consensus 3 ~~~f~~~d~~~~g~i~~~e~~~~~~~ 28 (29)
T smart00054 3 KEAFRLFDKDGDGKIDFEEFKDLLKA 28 (29)
T ss_pred HHHHHHHCCCCCCcEeHHHHHHHHHh
Confidence 34889999999999999999998874
No 190
>KOG0039 consensus Ferric reductase, NADH/NADPH oxidase and related proteins [Inorganic ion transport and metabolism; Secondary metabolites biosynthesis, transport and catabolism]
Probab=92.84 E-value=1.4 Score=53.41 Aligned_cols=79 Identities=15% Similarity=0.273 Sum_probs=55.5
Q ss_pred CCceehhhhcccccCCCCCHHHHHHHHHHHHccCCCCCCceeHHHHHHHHHHhc--------cCChHHHHHHHhhhhcCC
Q 003558 184 NGVLPRARFGECIGMNKDSKDFAVELFDALTRRRNIQGDTITKDQLREFWDQIS--------DQSFDSRLQTFFDMVDKD 255 (811)
Q Consensus 184 dG~Is~~ef~~~lg~~~~~~~~~~~lf~~l~d~d~~~~G~I~~~EF~~~~~~l~--------~~~~~e~l~~~F~~fDkD 255 (811)
+| ++.+||. ..... .+.-.+-+|++ .|. .+|.++.+|+.++..... ....++.-..+++..|.+
T Consensus 2 ~~-~~~~~~~-~~~~~--~d~~l~~~f~~-~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 73 (646)
T KOG0039|consen 2 EG-ISFQELK-ITDCS--YDDKLQTFFDM-YDK---GDGKLTEEEVRELIMSSISANWLSLIKKQTEEYAALIMEELDPD 73 (646)
T ss_pred CC-cchhhhc-ccCCC--hhHHHHHHHHH-Hhh---hcCCccHHHHHHHHHHHHHhhhhhhhhhhhhHHHHHhhhhcccc
Confidence 56 8888888 22222 34456677774 443 378999999988876432 123345567789999999
Q ss_pred CCCceeHHHHHHHHH
Q 003558 256 ADGRITEDEVREIIS 270 (811)
Q Consensus 256 ~dG~It~eE~~~il~ 270 (811)
+.|++..+++..++.
T Consensus 74 ~~~y~~~~~~~~ll~ 88 (646)
T KOG0039|consen 74 HKGYITNEDLEILLL 88 (646)
T ss_pred ccceeeecchhHHHH
Confidence 999999999887775
No 191
>KOG0040 consensus Ca2+-binding actin-bundling protein (spectrin), alpha chain (EF-Hand protein superfamily) [Cytoskeleton]
Probab=92.80 E-value=0.36 Score=60.61 Aligned_cols=95 Identities=14% Similarity=0.236 Sum_probs=65.9
Q ss_pred HHHHHHHHccCCCCCCceeHHHHHHHHHHhccC-------ChHHHHHHHhhhhcCCCCCceeHHHHHHHHHhhhccCCCc
Q 003558 207 VELFDALTRRRNIQGDTITKDQLREFWDQISDQ-------SFDSRLQTFFDMVDKDADGRITEDEVREIISLSASANKLS 279 (811)
Q Consensus 207 ~~lf~~l~d~d~~~~G~I~~~EF~~~~~~l~~~-------~~~e~l~~~F~~fDkD~dG~It~eE~~~il~~~~~~~~l~ 279 (811)
..+|+ .+|++. +|.+|+++|...+..++.. .++-+++.+.+.+|.+.+|+|+.+|...+|...-..|-++
T Consensus 2256 s~~fk-hFDkek--~G~Ldhq~F~sCLrslgY~lpmvEe~~~~p~fe~~ld~vDP~r~G~Vsl~dY~afmi~~ETeNI~s 2332 (2399)
T KOG0040|consen 2256 SMMFK-HFDKEK--NGRLDHQHFKSCLRSLGYDLPMVEEGEPEPEFEEILDLVDPNRDGYVSLQDYMAFMISKETENILS 2332 (2399)
T ss_pred HHHHH-Hhchhh--ccCCcHHHHHHHHHhcCCCCcccccCCCChhHHHHHHhcCCCCcCcccHHHHHHHHHhcccccccc
Confidence 45576 466666 8889999988888877533 2344788888888999999998888887775333323222
Q ss_pred chHHHHHHHHHHHHHHcCCCCCCcccHHHHHH
Q 003558 280 NIQKQAEEYAALIMEELDPDHLGCIMIDNLEM 311 (811)
Q Consensus 280 ~~~~~~~e~~~~i~~e~D~d~dG~Is~eEF~~ 311 (811)
.+.++..|+.+|. +.-||+-++...
T Consensus 2333 ------~~eIE~AfraL~a-~~~yvtke~~~~ 2357 (2399)
T KOG0040|consen 2333 ------SEEIEDAFRALDA-GKPYVTKEELYQ 2357 (2399)
T ss_pred ------hHHHHHHHHHhhc-CCccccHHHHHh
Confidence 2345567888887 667888777644
No 192
>PF09279 EF-hand_like: Phosphoinositide-specific phospholipase C, efhand-like; InterPro: IPR015359 This domain is predominantly found in the enzyme phosphoinositol-specific phospholipase C. It adopts a structure consisting of a core of four alpha helices, in an EF like fold, and is required for functioning of the enzyme []. ; PDB: 3OHM_B 3QR0_A 2ZKM_X 2FJU_B 3QR1_D 1DJW_B 1DJI_B 1DJG_B 1QAS_B 2ISD_B ....
Probab=91.30 E-value=0.75 Score=39.95 Aligned_cols=69 Identities=19% Similarity=0.442 Sum_probs=45.2
Q ss_pred HHHHHhhhhcCCCCCceeHHHHHHHHHhhhccCCCcchHHHHHHHHHHHHHHcCCC----CCCcccHHHHHHHHHhCCcc
Q 003558 244 RLQTFFDMVDKDADGRITEDEVREIISLSASANKLSNIQKQAEEYAALIMEELDPD----HLGCIMIDNLEMLLLQAPAQ 319 (811)
Q Consensus 244 ~l~~~F~~fDkD~dG~It~eE~~~il~~~~~~~~l~~~~~~~~e~~~~i~~e~D~d----~dG~Is~eEF~~~l~~~p~~ 319 (811)
+++.+|+.+-. +.+.||.++|.+.|...-.....+ .+++.+ +|+.+.++ ..+.+++++|...|....+.
T Consensus 1 ei~~if~~ys~-~~~~mt~~~f~~FL~~eQ~~~~~~--~~~~~~----li~~~~~~~~~~~~~~lt~~gF~~fL~S~~N~ 73 (83)
T PF09279_consen 1 EIEEIFRKYSS-DKEYMTAEEFRRFLREEQGEPRLT--DEQAKE----LIEKFEPDERNRQKGQLTLEGFTRFLFSDENS 73 (83)
T ss_dssp HHHHHHHHHCT-TSSSEEHHHHHHHHHHTSS-TTSS--HHHHHH----HHHHHHHHHHHHCTTEEEHHHHHHHHHSTTCB
T ss_pred CHHHHHHHHhC-CCCcCCHHHHHHHHHHHhccccCc--HHHHHH----HHHHHccchhhcccCCcCHHHHHHHHCCCcCC
Confidence 36778888844 788999999999986433222222 333333 44444333 57999999999999766543
No 193
>KOG0046 consensus Ca2+-binding actin-bundling protein (fimbrin/plastin), EF-Hand protein superfamily [Cytoskeleton]
Probab=91.17 E-value=0.36 Score=54.87 Aligned_cols=74 Identities=4% Similarity=0.128 Sum_probs=53.9
Q ss_pred hhccCCcccHHHHHHHHHhHccCCCCceehhhhcccccCC--C---CCHHHHHHHHHHHHccCCCCCCceeHHHHHHHHH
Q 003558 160 ISKTDGGAGWANVEKRFDEITASTNGVLPRARFGECIGMN--K---DSKDFAVELFDALTRRRNIQGDTITKDQLREFWD 234 (811)
Q Consensus 160 i~~~~~~~~~~~l~~~F~~lD~d~dG~Is~~ef~~~lg~~--~---~~~~~~~~lf~~l~d~d~~~~G~I~~~EF~~~~~ 234 (811)
..+..+.+|..++++.|.++| |++|+++..|+..++... . ...++++++... .+.|. +|.|+|+||+..+.
T Consensus 9 ~~~~~tq~El~~l~~kF~~~d-~~~G~v~~~~l~~~f~k~~~~~g~~~~eei~~~l~~-~~~~~--~g~v~fe~f~~~~~ 84 (627)
T KOG0046|consen 9 LQSQLTQEELRELKEKFNKLD-DQKGYVTVYELPDAFKKAKLPLGYFVREEIKEILGE-VGVDA--DGRVEFEEFVGIFL 84 (627)
T ss_pred hcccccHHHHHHHHHHHHhhc-CCCCeeehHHhHHHHHHhcccccchhHHHHHHHHhc-cCCCc--CCccCHHHHHHHHH
Confidence 345556789999999999999 899999999998887321 1 024556666553 34444 89999999999776
Q ss_pred Hhc
Q 003558 235 QIS 237 (811)
Q Consensus 235 ~l~ 237 (811)
.+.
T Consensus 85 ~l~ 87 (627)
T KOG0046|consen 85 NLK 87 (627)
T ss_pred hhh
Confidence 653
No 194
>KOG1707 consensus Predicted Ras related/Rac-GTP binding protein [Defense mechanisms]
Probab=89.07 E-value=1.5 Score=51.15 Aligned_cols=149 Identities=11% Similarity=0.175 Sum_probs=97.2
Q ss_pred cHHHHHHHHHhHccCCCCceehhhhcc----cccCCCCCHHHHHHHHHHHHc--cCCCCCCceeHHHHHHHHHHhccCCh
Q 003558 168 GWANVEKRFDEITASTNGVLPRARFGE----CIGMNKDSKDFAVELFDALTR--RRNIQGDTITKDQLREFWDQISDQSF 241 (811)
Q Consensus 168 ~~~~l~~~F~~lD~d~dG~Is~~ef~~----~lg~~~~~~~~~~~lf~~l~d--~d~~~~G~I~~~EF~~~~~~l~~~~~ 241 (811)
-...+..+|...|.|+||.++=.|+.. |++..- +..+++.+-..+.+ .+|..++.++...|+-.-...-+...
T Consensus 193 ~v~al~RIFki~D~d~D~~Lsd~Eln~fQ~~CF~~pl-~p~~l~~vk~vv~e~~p~gv~~~~ltl~GFLfL~~lfiergr 271 (625)
T KOG1707|consen 193 CVKALKRIFKISDSDNDGALSDAELNDFQKKCFNTPL-DPQELEDVKNVVQEICPDGVYERGLTLPGFLFLNTLFIERGR 271 (625)
T ss_pred HHHHHHHHHhhhccccccccchhhhhHHHHHhcCCCC-CHHHHHHHHHHHHhhcCchhhhccccccchHHHHHHHHHhcc
Confidence 346788999999999999999877754 666654 34444444332211 24444577888888877665555555
Q ss_pred HHHHHHHhhhhcCCCCCceeHHHHHHHHHhhhccCCCcchHHHHHHHHHHHHHHcCCCCCCcccHHHHHHHHHhCCcc
Q 003558 242 DSRLQTFFDMVDKDADGRITEDEVREIISLSASANKLSNIQKQAEEYAALIMEELDPDHLGCIMIDNLEMLLLQAPAQ 319 (811)
Q Consensus 242 ~e~l~~~F~~fDkD~dG~It~eE~~~il~~~~~~~~l~~~~~~~~e~~~~i~~e~D~d~dG~Is~eEF~~~l~~~p~~ 319 (811)
.|....+-+.|--+.+=.++.+=+..-+. ......-++....-+....+|+.+|.|+||.++=+||..+....|..
T Consensus 272 ~EttW~iLR~fgY~DsleL~~~~l~p~~~--~~p~~s~ELs~~~~~Fl~~~f~~~D~d~Dg~L~p~El~~LF~~~P~~ 347 (625)
T KOG1707|consen 272 HETTWTILRKFGYTDSLELTDEYLPPRLK--VPPDQSVELSPKGYRFLVDVFEKFDRDNDGALSPEELKDLFSTAPGS 347 (625)
T ss_pred ccchhhhhhhcCCcchhhhhhhhcCcccc--CCCCcceeccHHHHHHHHHHHHhccCCCCCCcCHHHHHHHhhhCCCC
Confidence 55666777777666665555443221111 11111122234455667779999999999999999999999998864
No 195
>PLN02952 phosphoinositide phospholipase C
Probab=88.63 E-value=2.7 Score=50.01 Aligned_cols=93 Identities=11% Similarity=0.166 Sum_probs=62.3
Q ss_pred CCceeHHHHHHHHHHhc--cCChHHHHHHHhhhhcCCCCCceeHHHHHHHHHhhhccCCCcchHHHHHHHHHHHHHHcC-
Q 003558 221 GDTITKDQLREFWDQIS--DQSFDSRLQTFFDMVDKDADGRITEDEVREIISLSASANKLSNIQKQAEEYAALIMEELD- 297 (811)
Q Consensus 221 ~G~I~~~EF~~~~~~l~--~~~~~e~l~~~F~~fDkD~dG~It~eE~~~il~~~~~~~~l~~~~~~~~e~~~~i~~e~D- 297 (811)
.|.++|+||..+...+. ...+.+++..+|+.+-.++ +.+|.+||..+|...-.....+ .++++++++.+++...
T Consensus 14 ~g~l~f~~f~~f~~~~k~~~~~~r~ei~~lf~~~~~~~-~~mt~~~l~~FL~~~Q~e~~~~--~~~~~~i~~~~~~~~~~ 90 (599)
T PLN02952 14 SGSYNYKMFNLFNRKFKITEAEPPDDVKDVFCKFSVGG-GHMGADQLRRFLVLHQDELDCT--LAEAQRIVEEVINRRHH 90 (599)
T ss_pred CCCcCHHHHHHHHHHhccccCCChHHHHHHHHHHhCCC-CccCHHHHHHHHHHhCCCcCCC--HHHHHHHHHHHHhhccc
Confidence 68999999999888774 3346788999999996544 6899999999997433222121 2334444444443321
Q ss_pred --CCCCCcccHHHHHHHHHhC
Q 003558 298 --PDHLGCIMIDNLEMLLLQA 316 (811)
Q Consensus 298 --~d~dG~Is~eEF~~~l~~~ 316 (811)
..+.+.++++.|...|...
T Consensus 91 ~~~~~~~~l~~~~F~~~l~s~ 111 (599)
T PLN02952 91 VTRYTRHGLNLDDFFHFLLYD 111 (599)
T ss_pred cccccccCcCHHHHHHHHcCc
Confidence 1233569999999988743
No 196
>KOG4666 consensus Predicted phosphate acyltransferase, contains PlsC domain [Lipid transport and metabolism]
Probab=88.45 E-value=0.88 Score=48.98 Aligned_cols=96 Identities=11% Similarity=0.074 Sum_probs=74.4
Q ss_pred HHHHHHHHhHccCCCCceehhhhcccc----cCCCCCHHHHHHHHHHHHccCCCCCCceeHHHHHHHHHHhccCChHHHH
Q 003558 170 ANVEKRFDEITASTNGVLPRARFGECI----GMNKDSKDFAVELFDALTRRRNIQGDTITKDQLREFWDQISDQSFDSRL 245 (811)
Q Consensus 170 ~~l~~~F~~lD~d~dG~Is~~ef~~~l----g~~~~~~~~~~~lf~~l~d~d~~~~G~I~~~EF~~~~~~l~~~~~~e~l 245 (811)
..++.+|..+|.+.+|.+++-|-...+ +... ..+.++-.|+ +++.+. ||.+.-.+|...++.. .+..+-++
T Consensus 259 d~l~~~f~LFde~~tg~~D~re~v~~lavlc~p~~-t~~iiq~afk-~f~v~e--Dg~~ge~~ls~ilq~~-lgv~~l~v 333 (412)
T KOG4666|consen 259 DKLAPTFMLFDEGTTGNGDYRETVKTLAVLCGPPV-TPVIIQYAFK-RFSVAE--DGISGEHILSLILQVV-LGVEVLRV 333 (412)
T ss_pred hhhhhhhheecCCCCCcccHHHHhhhheeeeCCCC-cHHHHHHHHH-hccccc--ccccchHHHHHHHHHh-cCcceeec
Confidence 568899999999999999988866654 4444 5667777788 466665 8888887777666443 34455567
Q ss_pred HHHhhhhcCCCCCceeHHHHHHHHH
Q 003558 246 QTFFDMVDKDADGRITEDEVREIIS 270 (811)
Q Consensus 246 ~~~F~~fDkD~dG~It~eE~~~il~ 270 (811)
-..|...|...||+|+.+||+.++.
T Consensus 334 ~~lf~~i~q~d~~ki~~~~f~~fa~ 358 (412)
T KOG4666|consen 334 PVLFPSIEQKDDPKIYASNFRKFAA 358 (412)
T ss_pred cccchhhhcccCcceeHHHHHHHHH
Confidence 7889999999999999999999885
No 197
>KOG4065 consensus Uncharacterized conserved protein [Function unknown]
Probab=88.21 E-value=0.64 Score=42.63 Aligned_cols=58 Identities=17% Similarity=0.104 Sum_probs=40.5
Q ss_pred HHHHhHccCCCCceehhhhcccc---------cC----CCCCHHHHHHHHHHH-HccCCCCCCceeHHHHHHH
Q 003558 174 KRFDEITASTNGVLPRARFGECI---------GM----NKDSKDFAVELFDAL-TRRRNIQGDTITKDQLREF 232 (811)
Q Consensus 174 ~~F~~lD~d~dG~Is~~ef~~~l---------g~----~~~~~~~~~~lf~~l-~d~d~~~~G~I~~~EF~~~ 232 (811)
.-|+..|-|+|+.|+=-|+.+++ |. -. ++.+++.+.+++ .|.|-|++|.|||.||++.
T Consensus 71 HYF~MHDldknn~lDGiEl~kAiTH~H~~h~~ghep~Pl~-sE~Ele~~iD~vL~DdDfN~DG~IDYgEflK~ 142 (144)
T KOG4065|consen 71 HYFSMHDLDKNNFLDGIELLKAITHTHDAHDSGHEPVPLS-SEAELERLIDAVLDDDDFNGDGVIDYGEFLKR 142 (144)
T ss_pred hhhhhhccCcCCcchHHHHHHHHHHHhhhhhcCCCCCCCC-CHHHHHHHHHHHhcccccCCCceeeHHHHHhh
Confidence 46788888899999988887776 11 12 566677777654 3444456899999998764
No 198
>KOG1029 consensus Endocytic adaptor protein intersectin [Signal transduction mechanisms; Intracellular trafficking, secretion, and vesicular transport]
Probab=85.45 E-value=3.1 Score=49.53 Aligned_cols=62 Identities=24% Similarity=0.347 Sum_probs=47.5
Q ss_pred HHHHHHHhhhhcCCCCCceeHHHHHHHHHhhhccCCCcchHHHHHHHHHHHHHHcCCCCCCcccHHHHHHHH
Q 003558 242 DSRLQTFFDMVDKDADGRITEDEVREIISLSASANKLSNIQKQAEEYAALIMEELDPDHLGCIMIDNLEMLL 313 (811)
Q Consensus 242 ~e~l~~~F~~fDkD~dG~It~eE~~~il~~~~~~~~l~~~~~~~~e~~~~i~~e~D~d~dG~Is~eEF~~~l 313 (811)
.-+.+..|+..|+..+|++|-..-+.+|..+ +++ +.+ .+.|..-.|.|+||+++-+||.-.|
T Consensus 194 klKY~QlFNa~DktrsG~Lsg~qaR~aL~qS----~Lp--q~~----LA~IW~LsDvd~DGkL~~dEfilam 255 (1118)
T KOG1029|consen 194 KLKYRQLFNALDKTRSGYLSGQQARSALGQS----GLP--QNQ----LAHIWTLSDVDGDGKLSADEFILAM 255 (1118)
T ss_pred hhHHHHHhhhcccccccccccHHHHHHHHhc----CCc--hhh----HhhheeeeccCCCCcccHHHHHHHH
Confidence 3456789999999999999999999888632 222 222 2336666899999999999998655
No 199
>KOG3555 consensus Ca2+-binding proteoglycan Testican [General function prediction only]
Probab=84.27 E-value=0.99 Score=48.89 Aligned_cols=64 Identities=17% Similarity=0.208 Sum_probs=51.8
Q ss_pred HHHHHHHhhhhcCCCCCceeHHHHHHHHHhhhccCCCcchHHHHHHHHHHHHHHcCCCCCCcccHHHHHHHHHhCC
Q 003558 242 DSRLQTFFDMVDKDADGRITEDEVREIISLSASANKLSNIQKQAEEYAALIMEELDPDHLGCIMIDNLEMLLLQAP 317 (811)
Q Consensus 242 ~e~l~~~F~~fDkD~dG~It~eE~~~il~~~~~~~~l~~~~~~~~e~~~~i~~e~D~d~dG~Is~eEF~~~l~~~p 317 (811)
...+-.||+..|.|.||.++..|++.+-. . .-+.-++.+|..-|..+||.|+-+|++..+.+..
T Consensus 249 Kds~gWMFnklD~N~Dl~Ld~sEl~~I~l---d---------knE~CikpFfnsCD~~kDg~iS~~EWC~CF~k~~ 312 (434)
T KOG3555|consen 249 KDSLGWMFNKLDTNYDLLLDQSELRAIEL---D---------KNEACIKPFFNSCDTYKDGSISTNEWCYCFQKSD 312 (434)
T ss_pred hhhhhhhhhccccccccccCHHHhhhhhc---c---------CchhHHHHHHhhhcccccCccccchhhhhhccCC
Confidence 56789999999999999999999987642 1 1123445588899999999999999999887554
No 200
>KOG4578 consensus Uncharacterized conserved protein, contains KAZAL and TY domains [General function prediction only]
Probab=83.78 E-value=0.86 Score=49.01 Aligned_cols=69 Identities=13% Similarity=0.162 Sum_probs=54.0
Q ss_pred HHHHHhhhhcCCCCCceeHHHHHHHHHhhhccCCCcchHHHHHHHHHHHHHHcCCCCCCcccHHHHHHHHHhCCcc
Q 003558 244 RLQTFFDMVDKDADGRITEDEVREIISLSASANKLSNIQKQAEEYAALIMEELDPDHLGCIMIDNLEMLLLQAPAQ 319 (811)
Q Consensus 244 ~l~~~F~~fDkD~dG~It~eE~~~il~~~~~~~~l~~~~~~~~e~~~~i~~e~D~d~dG~Is~eEF~~~l~~~p~~ 319 (811)
-+..-|...|+|.++.|...|++.+=....+. .....-...+++.-|.|+|-.|+++|+...|...++.
T Consensus 334 vv~w~F~qLdkN~nn~i~rrEwKpFK~~l~k~-------s~~rkC~rk~~~yCDlNkDKkISl~Ew~~CL~~~~~~ 402 (421)
T KOG4578|consen 334 VVHWYFNQLDKNSNNDIERREWKPFKRVLLKK-------SKPRKCSRKFFKYCDLNKDKKISLDEWRGCLGVEKER 402 (421)
T ss_pred eeeeeeeeecccccCccchhhcchHHHHHHhh-------ccHHHHhhhcchhcccCCCceecHHHHhhhhcccccc
Confidence 35667999999999999999987665433222 2234456669999999999999999999999887764
No 201
>KOG4347 consensus GTPase-activating protein VRP [General function prediction only]
Probab=83.28 E-value=2.9 Score=49.14 Aligned_cols=60 Identities=22% Similarity=0.236 Sum_probs=53.5
Q ss_pred CHHHHHHHHHHHHccCCCCCCceeHHHHHHHHHHhccCChHHHHHHHhhhhcCCCCCceeHHHH
Q 003558 202 SKDFAVELFDALTRRRNIQGDTITKDQLREFWDQISDQSFDSRLQTFFDMVDKDADGRITEDEV 265 (811)
Q Consensus 202 ~~~~~~~lf~~l~d~d~~~~G~I~~~EF~~~~~~l~~~~~~e~l~~~F~~fDkD~dG~It~eE~ 265 (811)
+..+++++|+ +.|..+ +|.|||.+++..+..+..+.--+++..+|+++|.++| ..+.||.
T Consensus 553 s~~~~~rlF~-l~D~s~--~g~Ltf~~lv~gL~~l~~~~~~ek~~l~y~lh~~p~~-~~d~e~~ 612 (671)
T KOG4347|consen 553 SLIFLERLFR-LLDDSM--TGLLTFKDLVSGLSILKAGDALEKLKLLYKLHDPPAD-ELDREEV 612 (671)
T ss_pred HHHHHHHHHH-hcccCC--cceeEHHHHHHHHHHHHhhhHHHHHHHHHhhccCCcc-ccccccc
Confidence 5577899999 466555 8999999999999999988889999999999999999 9999997
No 202
>PF09279 EF-hand_like: Phosphoinositide-specific phospholipase C, efhand-like; InterPro: IPR015359 This domain is predominantly found in the enzyme phosphoinositol-specific phospholipase C. It adopts a structure consisting of a core of four alpha helices, in an EF like fold, and is required for functioning of the enzyme []. ; PDB: 3OHM_B 3QR0_A 2ZKM_X 2FJU_B 3QR1_D 1DJW_B 1DJI_B 1DJG_B 1QAS_B 2ISD_B ....
Probab=83.26 E-value=2.7 Score=36.42 Aligned_cols=61 Identities=15% Similarity=0.351 Sum_probs=47.8
Q ss_pred HHHHHHHHHccCCCCCCceeHHHHHHHHHHhccC--ChHHHHHHHhhhhcCC----CCCceeHHHHHHHHH
Q 003558 206 AVELFDALTRRRNIQGDTITKDQLREFWDQISDQ--SFDSRLQTFFDMVDKD----ADGRITEDEVREIIS 270 (811)
Q Consensus 206 ~~~lf~~l~d~d~~~~G~I~~~EF~~~~~~l~~~--~~~e~l~~~F~~fDkD----~dG~It~eE~~~il~ 270 (811)
++.+|+.+.. + .+.+|.++|..++..-... ...+.++.+++.|..+ ..+.+|.++|...|.
T Consensus 2 i~~if~~ys~--~--~~~mt~~~f~~FL~~eQ~~~~~~~~~~~~li~~~~~~~~~~~~~~lt~~gF~~fL~ 68 (83)
T PF09279_consen 2 IEEIFRKYSS--D--KEYMTAEEFRRFLREEQGEPRLTDEQAKELIEKFEPDERNRQKGQLTLEGFTRFLF 68 (83)
T ss_dssp HHHHHHHHCT--T--SSSEEHHHHHHHHHHTSS-TTSSHHHHHHHHHHHHHHHHHHCTTEEEHHHHHHHHH
T ss_pred HHHHHHHHhC--C--CCcCCHHHHHHHHHHHhccccCcHHHHHHHHHHHccchhhcccCCcCHHHHHHHHC
Confidence 5678886532 3 6899999999999866443 3688899999998766 479999999999985
No 203
>PF08726 EFhand_Ca_insen: Ca2+ insensitive EF hand; InterPro: IPR014837 EF hands are helix-loop-helix binding motifs involved in the regulation of many cellular processes. EF hands usually bind to Ca2+ ions, which cause a major conformational change that allows the protein to interact with its designated targets. This protein corresponds to an EF hand which has partially or entirely lost its calcium-binding properties. The calcium insensitive EF hand is still able to mediate protein-protein recognition []. ; PDB: 1H8B_A 1SJJ_B.
Probab=78.26 E-value=0.81 Score=38.58 Aligned_cols=30 Identities=13% Similarity=0.327 Sum_probs=25.4
Q ss_pred ChHHHHHHHhhhhcCCCCCceeHHHHHHHHH
Q 003558 240 SFDSRLQTFFDMVDKDADGRITEDEVREIIS 270 (811)
Q Consensus 240 ~~~e~l~~~F~~fDkD~dG~It~eE~~~il~ 270 (811)
.+.+.+..+|+.+ .++.++||.+||++.+.
T Consensus 3 ~s~eqv~~aFr~l-A~~KpyVT~~dLr~~l~ 32 (69)
T PF08726_consen 3 DSAEQVEEAFRAL-AGGKPYVTEEDLRRSLT 32 (69)
T ss_dssp STCHHHHHHHHHH-CTSSSCEEHHHHHHHS-
T ss_pred CCHHHHHHHHHHH-HcCCCcccHHHHHHHcC
Confidence 3457889999999 88899999999999874
No 204
>KOG0035 consensus Ca2+-binding actin-bundling protein (actinin), alpha chain (EF-Hand protein superfamily) [Cytoskeleton]
Probab=78.23 E-value=4.4 Score=49.80 Aligned_cols=101 Identities=12% Similarity=0.147 Sum_probs=76.0
Q ss_pred cccHHHHHHHHHhHccCCCCceehhhhcccc---cCCCC-CHHHHHHHHHHHHccCCCCCCceeHHHHHHHHHHh-ccCC
Q 003558 166 GAGWANVEKRFDEITASTNGVLPRARFGECI---GMNKD-SKDFAVELFDALTRRRNIQGDTITKDQLREFWDQI-SDQS 240 (811)
Q Consensus 166 ~~~~~~l~~~F~~lD~d~dG~Is~~ef~~~l---g~~~~-~~~~~~~lf~~l~d~d~~~~G~I~~~EF~~~~~~l-~~~~ 240 (811)
+....++++.|+..|....|.++.++|..|+ |.+.. .+....+.|..+..+|.+..|.+++.+|.+.+..- ...+
T Consensus 743 Q~v~~ElrAle~~~~~~d~~aa~~e~~~~~Lmslg~~~e~ee~~~~e~~~lvn~~n~l~~~qv~~~e~~ddl~R~~e~l~ 822 (890)
T KOG0035|consen 743 QYVLDELRALENEQDKIDGGAASPEELLRCLMSLGYNTEEEEQGIAEWFRLVNKKNPLIQGQVQLLEFEDDLEREYEDLD 822 (890)
T ss_pred HHHHHHHHHHHhHHHHhhcccCCHHHHHHHHHhcCcccchhHHHHHHHHHHHhccCcccccceeHHHHHhHhhhhhhhhc
Confidence 3455888888888888778899999999997 33320 13446667776555554335899999999998754 5556
Q ss_pred hHHHHHHHhhhhcCCCCCceeHHHHHH
Q 003558 241 FDSRLQTFFDMVDKDADGRITEDEVRE 267 (811)
Q Consensus 241 ~~e~l~~~F~~fDkD~dG~It~eE~~~ 267 (811)
..+++..+|...-++.. +|..+||..
T Consensus 823 ~~~r~i~s~~d~~ktk~-~lL~eEL~~ 848 (890)
T KOG0035|consen 823 TELRAILAFEDWAKTKA-YLLLEELVR 848 (890)
T ss_pred HHHHHHHHHHHHHcchh-HHHHHHHHh
Confidence 77889999999888877 899999876
No 205
>KOG0169 consensus Phosphoinositide-specific phospholipase C [Signal transduction mechanisms]
Probab=75.28 E-value=11 Score=45.30 Aligned_cols=98 Identities=13% Similarity=0.261 Sum_probs=69.1
Q ss_pred HHHHHHHHHHHccCCCCCCceeHHHHHHHHHHhccCChHHHHHHHhhhhcCCCCCceeHHHHHHHHHhhhccCCCcchHH
Q 003558 204 DFAVELFDALTRRRNIQGDTITKDQLREFWDQISDQSFDSRLQTFFDMVDKDADGRITEDEVREIISLSASANKLSNIQK 283 (811)
Q Consensus 204 ~~~~~lf~~l~d~d~~~~G~I~~~EF~~~~~~l~~~~~~e~l~~~F~~fDkD~dG~It~eE~~~il~~~~~~~~l~~~~~ 283 (811)
.-+..+|+. +|++. +|.++++|-..+..++.-...+.++...|+..|.-++|++..+|+.+.-....... .
T Consensus 136 ~wi~~~~~~-ad~~~--~~~~~~~~~~~~~~~~n~~l~~~~~~~~f~e~~~~~~~k~~~~~~~~~~~~~~~rp---e--- 206 (746)
T KOG0169|consen 136 HWIHSIFQE-ADKNK--NGHMSFDEVLDLLKQLNVQLSESKARRLFKESDNSQTGKLEEEEFVKFRKELTKRP---E--- 206 (746)
T ss_pred HHHHHHHHH-Hcccc--ccccchhhHHHHHHHHHHhhhHHHHHHHHHHHHhhccceehHHHHHHHHHhhccCc---h---
Confidence 445566774 66665 99999999999999998888899999999999999999999999988765221110 1
Q ss_pred HHHHHHHHHHHHcCCCCCCcccHHHHHHHHHhC
Q 003558 284 QAEEYAALIMEELDPDHLGCIMIDNLEMLLLQA 316 (811)
Q Consensus 284 ~~~e~~~~i~~e~D~d~dG~Is~eEF~~~l~~~ 316 (811)
+..+|.+.- ++.++++.+++..++...
T Consensus 207 -----v~~~f~~~s-~~~~~ls~~~L~~Fl~~~ 233 (746)
T KOG0169|consen 207 -----VYFLFVQYS-HGKEYLSTDDLLRFLEEE 233 (746)
T ss_pred -----HHHHHHHHh-CCCCccCHHHHHHHHHHh
Confidence 111333332 236666666666666544
No 206
>PF09069 EF-hand_3: EF-hand; InterPro: IPR015154 Like other EF hand domains, this domain forms a helix-loop-helix motif, though since it does not contain the canonical pattern of calcium binding residues found in many EF hand domains, it does not bind calcium ions. The main function of this domain is the provision of specificity in beta-dystroglycan recognition, though in dystrophin it serves an additional role: stabilisation of the WW domain (IPR001202 from INTERPRO), enhancing dystroglycan binding []. ; PDB: 1EG3_A 1EG4_A.
Probab=74.42 E-value=19 Score=32.09 Aligned_cols=72 Identities=10% Similarity=0.212 Sum_probs=44.3
Q ss_pred HHHHHHHhhhhcCCCCCceeHHHHHHHHHhh-------hccCCCcchHHHHHHHHHHHHHHcCCCCCCcccHHHHHHHHH
Q 003558 242 DSRLQTFFDMVDKDADGRITEDEVREIISLS-------ASANKLSNIQKQAEEYAALIMEELDPDHLGCIMIDNLEMLLL 314 (811)
Q Consensus 242 ~e~l~~~F~~fDkD~dG~It~eE~~~il~~~-------~~~~~l~~~~~~~~e~~~~i~~e~D~d~dG~Is~eEF~~~l~ 314 (811)
++|++.+|+.+ .|++|.++..-|...+... .+.....- ++..++..|+.. ...-.|+.++|.+.|+
T Consensus 2 ~dKyRylFsli-sd~~g~~~~~~l~~lL~d~lqip~~vgE~~aFg~----~e~sv~sCF~~~--~~~~~I~~~~Fl~wl~ 74 (90)
T PF09069_consen 2 EDKYRYLFSLI-SDSNGCMDQRKLGLLLHDVLQIPRAVGEGPAFGY----IEPSVRSCFQQV--QLSPKITENQFLDWLM 74 (90)
T ss_dssp HHHHHHHHHHH-S-TTS-B-HHHHHHHHHHHHHHHHHTT-GGGGT------HHHHHHHHHHT--TT-S-B-HHHHHHHHH
T ss_pred hHHHHHHHHHH-cCCCCCCcHHHHHHHHHHHHHHHHHhCccccccC----cHHHHHHHhccc--CCCCccCHHHHHHHHH
Confidence 47899999999 8999999999998887622 11111121 445566688876 3566799999999998
Q ss_pred hCCccc
Q 003558 315 QAPAQS 320 (811)
Q Consensus 315 ~~p~~~ 320 (811)
..|-.+
T Consensus 75 ~ePq~l 80 (90)
T PF09069_consen 75 SEPQSL 80 (90)
T ss_dssp T--TTT
T ss_pred hCCCee
Confidence 887543
No 207
>PF05042 Caleosin: Caleosin related protein; InterPro: IPR007736 This family contains plant proteins related to caleosin. Caleosins contain calcium-binding domains and have an oleosin-like association with lipid bodies. Caleosins are present at relatively low levels and are mainly bound to microsomal membrane fractions at the early stages of seed development. As the seeds mature, overall levels of caleosins increased dramatically and they were associated almost exclusively with storage lipid bodies []. The calcium binding domain is probably related to the calcium-binding EF-hands motif IPR002048 from INTERPRO.
Probab=74.07 E-value=20 Score=35.80 Aligned_cols=69 Identities=14% Similarity=0.179 Sum_probs=44.5
Q ss_pred HHHHHHHhhhhcCCCCCceeHHHHHHHHHhhhccCC-CcchHHHHHHHHHHHHHHcCCCCCCcccHHHHHHHH
Q 003558 242 DSRLQTFFDMVDKDADGRITEDEVREIISLSASANK-LSNIQKQAEEYAALIMEELDPDHLGCIMIDNLEMLL 313 (811)
Q Consensus 242 ~e~l~~~F~~fDkD~dG~It~eE~~~il~~~~~~~~-l~~~~~~~~e~~~~i~~e~D~d~dG~Is~eEF~~~l 313 (811)
.++.+.+|..+++.+.+.+|..|+.+|+......+. ..-.....+ .. +.-.+-.|+||.+.-|+-+.+.
T Consensus 95 p~kFe~iF~kya~~~~d~LT~~E~~~m~~~nr~~~D~~GW~a~~~E--W~-~~y~L~~d~dG~l~Ke~iR~vY 164 (174)
T PF05042_consen 95 PQKFEEIFSKYAKTGPDALTLRELWRMLKGNRNANDPFGWFAAFFE--WG-ALYILAKDKDGFLSKEDIRGVY 164 (174)
T ss_pred HHHHHHHHHHhCCCCCCCcCHHHHHHHHHhccccCCcchhhhhhhH--HH-HHHHHHcCcCCcEeHHHHhhhc
Confidence 578999999999999999999999999973222111 111111111 11 1222346789999988876654
No 208
>KOG0998 consensus Synaptic vesicle protein EHS-1 and related EH domain proteins [Signal transduction mechanisms; Intracellular trafficking, secretion, and vesicular transport]
Probab=72.09 E-value=2.5 Score=52.72 Aligned_cols=66 Identities=26% Similarity=0.348 Sum_probs=49.6
Q ss_pred HHHHHHhhhhcCCCCCceeHHHHHHHHHhhhccCCCcchHHHHHHHHHHHHHHcCCCCCCcccHHHHHHHHHhCCc
Q 003558 243 SRLQTFFDMVDKDADGRITEDEVREIISLSASANKLSNIQKQAEEYAALIMEELDPDHLGCIMIDNLEMLLLQAPA 318 (811)
Q Consensus 243 e~l~~~F~~fDkD~dG~It~eE~~~il~~~~~~~~l~~~~~~~~e~~~~i~~e~D~d~dG~Is~eEF~~~l~~~p~ 318 (811)
..+..+|..+|++++|.|+..+.+.++.- ..+. . +.++.+....|.+++|.++++||.-.|-....
T Consensus 283 ~~~~~if~q~d~~~dG~I~s~~~~~~f~~----~gl~--~----~~l~~~w~l~d~~n~~~ls~~ef~~~~~~~~~ 348 (847)
T KOG0998|consen 283 QKYSKIFSQVDKDNDGSISSNEARNIFLP----FGLS--K----PRLAHVWLLADTQNTGTLSKDEFALAMHLLEQ 348 (847)
T ss_pred HHHHHHHHhccccCCCccccccccccccc----CCCC--h----hhhhhhhhhcchhccCcccccccchhhhhhhh
Confidence 45666899999999999999999988852 2233 1 22333666799999999999999887765543
No 209
>KOG4578 consensus Uncharacterized conserved protein, contains KAZAL and TY domains [General function prediction only]
Probab=69.10 E-value=4.8 Score=43.56 Aligned_cols=52 Identities=19% Similarity=0.293 Sum_probs=41.6
Q ss_pred CCCCceeHHHHHHHHHHhcc-CChHHHHHHHhhhhcCCCCCceeHHHHHHHHH
Q 003558 219 IQGDTITKDQLREFWDQISD-QSFDSRLQTFFDMVDKDADGRITEDEVREIIS 270 (811)
Q Consensus 219 ~~~G~I~~~EF~~~~~~l~~-~~~~e~l~~~F~~fDkD~dG~It~eE~~~il~ 270 (811)
|.++.|+..|+..+-..+.+ .......+.+|++.|.|+|-.||++|++.-|.
T Consensus 345 N~nn~i~rrEwKpFK~~l~k~s~~rkC~rk~~~yCDlNkDKkISl~Ew~~CL~ 397 (421)
T KOG4578|consen 345 NSNNDIERREWKPFKRVLLKKSKPRKCSRKFFKYCDLNKDKKISLDEWRGCLG 397 (421)
T ss_pred cccCccchhhcchHHHHHHhhccHHHHhhhcchhcccCCCceecHHHHhhhhc
Confidence 34889999997766554433 34566789999999999999999999998885
No 210
>KOG1264 consensus Phospholipase C [Lipid transport and metabolism]
Probab=65.10 E-value=34 Score=41.54 Aligned_cols=165 Identities=13% Similarity=0.211 Sum_probs=92.6
Q ss_pred cCchhHHHHHhhhhhhhccC-C---cccH-HHHHHHHHhHccCCCCceehhhhcccccC---CCCCHHHHHHHHHHHHcc
Q 003558 145 RNKSAAAYALKGLKFISKTD-G---GAGW-ANVEKRFDEITASTNGVLPRARFGECIGM---NKDSKDFAVELFDALTRR 216 (811)
Q Consensus 145 r~~s~a~~alk~l~~i~~~~-~---~~~~-~~l~~~F~~lD~d~dG~Is~~ef~~~lg~---~~~~~~~~~~lf~~l~d~ 216 (811)
..+..+-..+++++++.+.. . ...+ ..+++.|-.+|.+....|+..+++..+.. +-.+..+..+-|- .|.
T Consensus 114 tse~e~n~w~~glkw~~~dtl~a~~p~qI~~wlrk~~ysvd~~~~~~isard~k~~l~qvn~k~~~~kfl~e~~t--ed~ 191 (1267)
T KOG1264|consen 114 TSEEEANNWLSGLKWLHQDTLNAPTPLQIERWLRKQIYSVDQTRENSISARDLKTILPQVNFKVSSAKFLKEKFT--EDG 191 (1267)
T ss_pred hhhHHHHHHhhcchhhhhhhccCCChHHHHHHHHhhheeccchhhhheeHHhhhcccccceEEechHHHHHHHHh--Hhh
Confidence 44555666788888876532 1 1233 67889999988666677999999988732 1113445544443 232
Q ss_pred CCCCCCceeHHHHHHHHHHhccCChHHHHHHH---h--hhhcCCCCCceeHHHHHHHHHhhhc---cCCCcchHHHHHHH
Q 003558 217 RNIQGDTITKDQLREFWDQISDQSFDSRLQTF---F--DMVDKDADGRITEDEVREIISLSAS---ANKLSNIQKQAEEY 288 (811)
Q Consensus 217 d~~~~G~I~~~EF~~~~~~l~~~~~~e~l~~~---F--~~fDkD~dG~It~eE~~~il~~~~~---~~~l~~~~~~~~e~ 288 (811)
. ..+.++|++|......+.-......+... | ..=|...--.++..||++++.-.-. +.....+++-+...
T Consensus 192 ~--~k~dlsf~~f~~ly~~lmfs~~~a~l~e~~~~~~~~~~~~~d~~vV~~~ef~rFL~~~Q~e~~Asdr~av~~~~r~F 269 (1267)
T KOG1264|consen 192 A--RKDDLSFEQFHLLYKKLMFSQQKAILLEFKKDFILGNTDRPDASVVYLQEFQRFLIHEQQEHWASDRNAVREFMRKF 269 (1267)
T ss_pred h--ccccccHHHHHHHHHHHhhccchhhhhcccchhhhcCCCCccceEeeHHHHHHHHHhhhHHHhhhHHHHHHHHHHHH
Confidence 2 37899999999998876433222111111 1 1222222357999999999852111 11111111212222
Q ss_pred HHHHHHHcCCCCCCcccHHHHHHHHHhC
Q 003558 289 AALIMEELDPDHLGCIMIDNLEMLLLQA 316 (811)
Q Consensus 289 ~~~i~~e~D~d~dG~Is~eEF~~~l~~~ 316 (811)
++..|++. +.-++.++||++.|=..
T Consensus 270 ~~D~~re~---~EPyl~v~EFv~fLFSr 294 (1267)
T KOG1264|consen 270 IDDTMRET---AEPYLFVDEFVTFLFSR 294 (1267)
T ss_pred Hhhhhhhc---cCcceeHHHHHHHHhhc
Confidence 22222222 34589999999987543
No 211
>KOG0035 consensus Ca2+-binding actin-bundling protein (actinin), alpha chain (EF-Hand protein superfamily) [Cytoskeleton]
Probab=63.00 E-value=14 Score=45.59 Aligned_cols=76 Identities=14% Similarity=0.073 Sum_probs=60.7
Q ss_pred HHHHHHHhhhhcCCCCCceeHHHHHHHHHhhhccCCCcchHHHHHHHHHHHHHHcCCCCCCcccHHHHHHHHHhCCccc
Q 003558 242 DSRLQTFFDMVDKDADGRITEDEVREIISLSASANKLSNIQKQAEEYAALIMEELDPDHLGCIMIDNLEMLLLQAPAQS 320 (811)
Q Consensus 242 ~e~l~~~F~~fDkD~dG~It~eE~~~il~~~~~~~~l~~~~~~~~e~~~~i~~e~D~d~dG~Is~eEF~~~l~~~p~~~ 320 (811)
.+++++.|+.+|+...|..+.+|+...+.... .+ ... +++..+.+..++...|++.-|.+++.+|...|.+.....
T Consensus 746 ~~ElrAle~~~~~~d~~aa~~e~~~~~Lmslg-~~-~e~-ee~~~~e~~~lvn~~n~l~~~qv~~~e~~ddl~R~~e~l 821 (890)
T KOG0035|consen 746 LDELRALENEQDKIDGGAASPEELLRCLMSLG-YN-TEE-EEQGIAEWFRLVNKKNPLIQGQVQLLEFEDDLEREYEDL 821 (890)
T ss_pred HHHHHHHHhHHHHhhcccCCHHHHHHHHHhcC-cc-cch-hHHHHHHHHHHHhccCcccccceeHHHHHhHhhhhhhhh
Confidence 56899999999999999999999998886332 22 221 456667777799999999999999999999888765543
No 212
>PF05517 p25-alpha: p25-alpha ; InterPro: IPR008907 This family encodes a 25 kDa protein that is phosphorylated by a Ser/Thr-Pro kinase []. It has been described as a brain specific protein, but it is found in Tetrahymena thermophila.; PDB: 1WLM_A 1PUL_A 2JRF_A.
Probab=61.81 E-value=64 Score=31.67 Aligned_cols=64 Identities=13% Similarity=0.253 Sum_probs=36.1
Q ss_pred HHHHHHHHccCCCCCCceeHHHHHHHHHHh---ccCChHHHHHHHhhhhcCCCCCceeHHHHHHHHH
Q 003558 207 VELFDALTRRRNIQGDTITKDQLREFWDQI---SDQSFDSRLQTFFDMVDKDADGRITEDEVREIIS 270 (811)
Q Consensus 207 ~~lf~~l~d~d~~~~G~I~~~EF~~~~~~l---~~~~~~e~l~~~F~~fDkD~dG~It~eE~~~il~ 270 (811)
+++|..+..-...+...++-..|..++... ........+..+|..+-..+...|++++|.++|.
T Consensus 2 ~~~F~~f~~fG~~~~~~m~~~~F~Kl~kD~~i~d~k~t~tdvDiiF~Kvk~k~~~~I~f~~F~~aL~ 68 (154)
T PF05517_consen 2 EAVFKAFASFGKKNGTEMDSKNFAKLCKDCGIIDKKLTSTDVDIIFSKVKAKGARKITFEQFLEALA 68 (154)
T ss_dssp HHHHHHHHCSSTSTSSEEEHHHHHHHHHHTSS--SSS-HHHHHHHHHHHT-SS-SEEEHHHHHHHHH
T ss_pred HHHHHHHHHhcCCccccccHHHHHHHHHHcCCCCCCCchHHHHHHHHHhhcCCCcccCHHHHHHHHH
Confidence 345554432221224567777777777654 2224456677777776666666788888877775
No 213
>KOG3555 consensus Ca2+-binding proteoglycan Testican [General function prediction only]
Probab=60.21 E-value=11 Score=41.11 Aligned_cols=59 Identities=7% Similarity=0.129 Sum_probs=32.4
Q ss_pred HHHHHHHHhHccCCCCceehhhhcccccCCCCCHHHHHHHHHHHHccCCCCCCceeHHHHHHHH
Q 003558 170 ANVEKRFDEITASTNGVLPRARFGECIGMNKDSKDFAVELFDALTRRRNIQGDTITKDQLREFW 233 (811)
Q Consensus 170 ~~l~~~F~~lD~d~dG~Is~~ef~~~lg~~~~~~~~~~~lf~~l~d~d~~~~G~I~~~EF~~~~ 233 (811)
.++.=||+++|.|.||.|+..|+..+---+ ++.-++..|+. -|... +|.|+-+|+...+
T Consensus 250 ds~gWMFnklD~N~Dl~Ld~sEl~~I~ldk--nE~CikpFfns-CD~~k--Dg~iS~~EWC~CF 308 (434)
T KOG3555|consen 250 DSLGWMFNKLDTNYDLLLDQSELRAIELDK--NEACIKPFFNS-CDTYK--DGSISTNEWCYCF 308 (434)
T ss_pred hhhhhhhhccccccccccCHHHhhhhhccC--chhHHHHHHhh-hcccc--cCccccchhhhhh
Confidence 345667777777777777777766543222 23344445552 44433 5566666654433
No 214
>PLN02631 ferric-chelate reductase
Probab=57.83 E-value=18 Score=44.20 Aligned_cols=60 Identities=22% Similarity=0.131 Sum_probs=44.9
Q ss_pred hhhhcchhHHHHHHHHHHHHHHHhcchhhhcccCCCCCccccccc--hhHHHHHHHHHHHH-HHHHHHHhhh
Q 003558 496 HFVKSVEGVTGIVMVVLMAIAFTLATPWFRRNKLNLPKPLKKLTG--FNAFWYSHHLFVIV-YTLLIVHGQY 564 (811)
Q Consensus 496 ~~~~~~~~~tGiv~~v~~~i~~~~s~~~~Rr~~~~~~~p~~~~~~--ye~F~~~H~l~~i~-~vll~~H~~~ 564 (811)
..+..+.-.+|++++.+|.++++++. |. ++|-.+++ ||.|...|+.++-+ +++.++|+..
T Consensus 147 ~~l~~ig~RtGila~~~lpll~L~a~---Rn------n~L~~ltG~s~e~~i~yHRWlGri~~~la~iH~i~ 209 (699)
T PLN02631 147 AKFRAFGLRIGYVGHICWAFLFFPVT---RA------STILPLVGLTSESSIKYHIWLGHVSNFLFLVHTVV 209 (699)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHh---cc------CHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44566678899999999988888764 33 35556666 99999999998754 5567899774
No 215
>PF05042 Caleosin: Caleosin related protein; InterPro: IPR007736 This family contains plant proteins related to caleosin. Caleosins contain calcium-binding domains and have an oleosin-like association with lipid bodies. Caleosins are present at relatively low levels and are mainly bound to microsomal membrane fractions at the early stages of seed development. As the seeds mature, overall levels of caleosins increased dramatically and they were associated almost exclusively with storage lipid bodies []. The calcium binding domain is probably related to the calcium-binding EF-hands motif IPR002048 from INTERPRO.
Probab=53.98 E-value=32 Score=34.32 Aligned_cols=30 Identities=10% Similarity=0.052 Sum_probs=20.8
Q ss_pred HHHHHHHHHcCCCCCCcccHHHHHHHHHhC
Q 003558 287 EYAALIMEELDPDHLGCIMIDNLEMLLLQA 316 (811)
Q Consensus 287 e~~~~i~~e~D~d~dG~Is~eEF~~~l~~~ 316 (811)
+..+.||...+..+.+.+++.|..+|++.+
T Consensus 96 ~kFe~iF~kya~~~~d~LT~~E~~~m~~~n 125 (174)
T PF05042_consen 96 QKFEEIFSKYAKTGPDALTLRELWRMLKGN 125 (174)
T ss_pred HHHHHHHHHhCCCCCCCcCHHHHHHHHHhc
Confidence 345567777777777777777777777654
No 216
>KOG0042 consensus Glycerol-3-phosphate dehydrogenase [Energy production and conversion]
Probab=53.29 E-value=12 Score=43.74 Aligned_cols=66 Identities=15% Similarity=0.180 Sum_probs=50.2
Q ss_pred HHHHHhhhhcCCCCCceeHHHHHHHHHhhhccCCCcchHHHHHHHHHHHHHHcCCCCCCcccHHHHHHHHHhCC
Q 003558 244 RLQTFFDMVDKDADGRITEDEVREIISLSASANKLSNIQKQAEEYAALIMEELDPDHLGCIMIDNLEMLLLQAP 317 (811)
Q Consensus 244 ~l~~~F~~fDkD~dG~It~eE~~~il~~~~~~~~l~~~~~~~~e~~~~i~~e~D~d~dG~Is~eEF~~~l~~~p 317 (811)
..+.-|..+|.|+.|+++.+++.++|.... .+.+ ++ ..+.+++++|.+..|+++.+||.++|....
T Consensus 594 ~~~~rf~~lD~~k~~~~~i~~v~~vlk~~~--~~~d--~~----~~~~~l~ea~~~~~g~v~l~e~~q~~s~~~ 659 (680)
T KOG0042|consen 594 RRKTRFAFLDADKKAYQAIADVLKVLKSEN--VGWD--ED----RLHEELQEADENLNGFVELREFLQLMSAIK 659 (680)
T ss_pred HHHHHHHhhcchHHHHHHHHHHHHHHHHhc--CCCC--HH----HHHHHHHHHHHhhcceeeHHHHHHHHHHHh
Confidence 455779999999999999999999997332 1222 33 344477778888899999999999887543
No 217
>PLN02292 ferric-chelate reductase
Probab=52.39 E-value=32 Score=42.11 Aligned_cols=59 Identities=24% Similarity=0.210 Sum_probs=43.6
Q ss_pred hhhcchhHHHHHHHHHHHHHHHhcchhhhcccCCCCCccccccc--hhHHHHHHHHHHH-HHHHHHHHhhh
Q 003558 497 FVKSVEGVTGIVMVVLMAIAFTLATPWFRRNKLNLPKPLKKLTG--FNAFWYSHHLFVI-VYTLLIVHGQY 564 (811)
Q Consensus 497 ~~~~~~~~tGiv~~v~~~i~~~~s~~~~Rr~~~~~~~p~~~~~~--ye~F~~~H~l~~i-~~vll~~H~~~ 564 (811)
.+..+...+|+++..+|.++++++. |. ++|-.+++ ||.|-..|+.++- ++++.++|+..
T Consensus 165 ~l~~vg~R~Gila~~~lpll~l~~~---Rn------n~L~~ltG~s~e~f~~yHRWlGrii~ll~~lH~i~ 226 (702)
T PLN02292 165 RLDSIAVRLGLVGNICLAFLFYPVA---RG------SSLLAAVGLTSESSIKYHIWLGHLVMTLFTSHGLC 226 (702)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHh---cC------CHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3445567899999888888887664 43 35556655 9999999998874 55667999774
No 218
>KOG4347 consensus GTPase-activating protein VRP [General function prediction only]
Probab=48.02 E-value=20 Score=42.44 Aligned_cols=77 Identities=18% Similarity=0.179 Sum_probs=53.0
Q ss_pred eeHHHHHHHHHHhccC-ChHHHHHHHhhhhcCCCCCceeHHHHHHHHHhhhccCCCcchHHHHHHHHHHHHHHcCCCCCC
Q 003558 224 ITKDQLREFWDQISDQ-SFDSRLQTFFDMVDKDADGRITEDEVREIISLSASANKLSNIQKQAEEYAALIMEELDPDHLG 302 (811)
Q Consensus 224 I~~~EF~~~~~~l~~~-~~~e~l~~~F~~fDkD~dG~It~eE~~~il~~~~~~~~l~~~~~~~~e~~~~i~~e~D~d~dG 302 (811)
|+|+.|......+..- ....-++..|+..|++++|.||+.+|..-+..... .++-+.+..+++-.|++.|
T Consensus 535 i~~~~f~~~f~~l~pw~~s~~~~~rlF~l~D~s~~g~Ltf~~lv~gL~~l~~--------~~~~ek~~l~y~lh~~p~~- 605 (671)
T KOG4347|consen 535 IDYAQFLEVFRELLPWAVSLIFLERLFRLLDDSMTGLLTFKDLVSGLSILKA--------GDALEKLKLLYKLHDPPAD- 605 (671)
T ss_pred HHHhhHHHHhhccCchhHHHHHHHHHHHhcccCCcceeEHHHHHHHHHHHHh--------hhHHHHHHHHHhhccCCcc-
Confidence 4455555554443221 33456789999999999999999998877753322 2234556678999999988
Q ss_pred cccHHHH
Q 003558 303 CIMIDNL 309 (811)
Q Consensus 303 ~Is~eEF 309 (811)
..+.+|-
T Consensus 606 ~~d~e~~ 612 (671)
T KOG4347|consen 606 ELDREEV 612 (671)
T ss_pred ccccccc
Confidence 7777765
No 219
>KOG1029 consensus Endocytic adaptor protein intersectin [Signal transduction mechanisms; Intracellular trafficking, secretion, and vesicular transport]
Probab=47.14 E-value=16 Score=43.92 Aligned_cols=63 Identities=10% Similarity=0.199 Sum_probs=47.2
Q ss_pred HHHHHHHHhHccCCCCceehhhhcccccCCCCCHHHHHHHHHHHHccCCCCCCceeHHHHHHHHHH
Q 003558 170 ANVEKRFDEITASTNGVLPRARFGECIGMNKDSKDFAVELFDALTRRRNIQGDTITKDQLREFWDQ 235 (811)
Q Consensus 170 ~~l~~~F~~lD~d~dG~Is~~ef~~~lg~~~~~~~~~~~lf~~l~d~d~~~~G~I~~~EF~~~~~~ 235 (811)
-...++|+.+|+...|+|+-..-..+|+...-....+-.|+. |.|.|+ ||.++.+||+-+|..
T Consensus 195 lKY~QlFNa~DktrsG~Lsg~qaR~aL~qS~Lpq~~LA~IW~-LsDvd~--DGkL~~dEfilam~l 257 (1118)
T KOG1029|consen 195 LKYRQLFNALDKTRSGYLSGQQARSALGQSGLPQNQLAHIWT-LSDVDG--DGKLSADEFILAMHL 257 (1118)
T ss_pred hHHHHHhhhcccccccccccHHHHHHHHhcCCchhhHhhhee-eeccCC--CCcccHHHHHHHHHH
Confidence 346889999999899999988877777543213344556777 788888 999999999877653
No 220
>KOG2243 consensus Ca2+ release channel (ryanodine receptor) [Signal transduction mechanisms]
Probab=46.53 E-value=26 Score=44.40 Aligned_cols=60 Identities=12% Similarity=0.182 Sum_probs=41.9
Q ss_pred HhhhhcCCCCCceeHHHHHHHHHhhhccCCCcchHHHHHHHHHHHHHHcCCCCCCcccHHHHHHHHHhC
Q 003558 248 FFDMVDKDADGRITEDEVREIISLSASANKLSNIQKQAEEYAALIMEELDPDHLGCIMIDNLEMLLLQA 316 (811)
Q Consensus 248 ~F~~fDkD~dG~It~eE~~~il~~~~~~~~l~~~~~~~~e~~~~i~~e~D~d~dG~Is~eEF~~~l~~~ 316 (811)
-|+.||.||.|.|+..||.++|..... .. + ..++-++.-+..|.+...+|+||.+-..+.
T Consensus 4062 tfkeydpdgkgiiskkdf~kame~~k~---yt--q----se~dfllscae~dend~~~y~dfv~rfhep 4121 (5019)
T KOG2243|consen 4062 TFKEYDPDGKGIISKKDFHKAMEGHKH---YT--Q----SEIDFLLSCAEADENDMFDYEDFVDRFHEP 4121 (5019)
T ss_pred cchhcCCCCCccccHHHHHHHHhcccc---ch--h----HHHHHHHHhhccCccccccHHHHHHHhcCc
Confidence 377889999999999999999862211 11 2 223335555666777889999998866543
No 221
>PLN02844 oxidoreductase/ferric-chelate reductase
Probab=44.57 E-value=66 Score=39.58 Aligned_cols=58 Identities=22% Similarity=0.193 Sum_probs=41.4
Q ss_pred hhcchhHHHHHHHHHHHHHHHhcchhhhcccCCCCCccccccc--hhHHHHHHHHHHHH-HHHHHHHhhh
Q 003558 498 VKSVEGVTGIVMVVLMAIAFTLATPWFRRNKLNLPKPLKKLTG--FNAFWYSHHLFVIV-YTLLIVHGQY 564 (811)
Q Consensus 498 ~~~~~~~tGiv~~v~~~i~~~~s~~~~Rr~~~~~~~p~~~~~~--ye~F~~~H~l~~i~-~vll~~H~~~ 564 (811)
+..+...+|+++.++|.++++++. |. +++.++++ ||.+-..|+.++-+ +++.++|+..
T Consensus 152 ~~~va~R~G~la~~~Lpll~llv~---Rn------n~l~~ltGis~e~~i~fHrWlGr~~~llallH~i~ 212 (722)
T PLN02844 152 YLRVATRFGLLAEACLALLLLPVL---RG------LALFRLLGIQFEASVRYHVWLGTSMIFFATVHGAS 212 (722)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHh---cc------cHHHHhhCCCHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 334556789999999988887765 32 23444444 99999999998854 4556899873
No 222
>KOG1707 consensus Predicted Ras related/Rac-GTP binding protein [Defense mechanisms]
Probab=43.38 E-value=19 Score=42.32 Aligned_cols=89 Identities=10% Similarity=0.160 Sum_probs=57.9
Q ss_pred cccHHHHHHHHHhHccCCCCceehhhhcccccCCCCCHHHHHHHHHHHHccCCCCCCceeHHHHHHHHHHhccCChHHHH
Q 003558 166 GAGWANVEKRFDEITASTNGVLPRARFGECIGMNKDSKDFAVELFDALTRRRNIQGDTITKDQLREFWDQISDQSFDSRL 245 (811)
Q Consensus 166 ~~~~~~l~~~F~~lD~d~dG~Is~~ef~~~lg~~~~~~~~~~~lf~~l~d~d~~~~G~I~~~EF~~~~~~l~~~~~~e~l 245 (811)
...++-+...|..+|.|+||.++.+||..++..-+ ...-....+. ...-.++.|.++++-|+..|.-+.-.+....+
T Consensus 311 ~~~~~Fl~~~f~~~D~d~Dg~L~p~El~~LF~~~P-~~pW~~~~~~--~~t~~~~~G~ltl~g~l~~WsL~Tlld~~~t~ 387 (625)
T KOG1707|consen 311 PKGYRFLVDVFEKFDRDNDGALSPEELKDLFSTAP-GSPWTSSPYK--DSTVKNERGWLTLNGFLSQWSLMTLLDPRRTL 387 (625)
T ss_pred HHHHHHHHHHHHhccCCCCCCcCHHHHHHHhhhCC-CCCCCCCccc--ccceecccceeehhhHHHHHHHHhhccHHHHH
Confidence 45678899999999999999999999998873322 1000000111 00111237999999999999877555443333
Q ss_pred -HHHhhhhcCCCC
Q 003558 246 -QTFFDMVDKDAD 257 (811)
Q Consensus 246 -~~~F~~fDkD~d 257 (811)
+.+|--|++|..
T Consensus 388 ~~L~Ylgf~~~~~ 400 (625)
T KOG1707|consen 388 EYLAYLGFPTDAG 400 (625)
T ss_pred HHHHhcCCccccc
Confidence 445777777754
No 223
>PF00033 Cytochrom_B_N: Cytochrome b(N-terminal)/b6/petB; InterPro: IPR016174 This entry represents a haem-binding domain with a 4-helical bundle structure that is found in transmembrane di-haem cytochromes. The domain contains four transmembrane helices in an up-and-down bundle, and binds two haem groups in between the helices; three of the four haem-binding residues is conserved between family members. Proteins containing this domain include: N-terminal domain of mitochondrial cytochrome b subunit, in which the domain contains an extra transmembrane linker helix that is absent in plant and cyanobacteria subunits []. Cytochrome b6 subunit of the cytochrome b6f complex, which provides the electronic connection between the photosystems I and II reaction centres of oxygenic photosynthesis, and generates a transmembrane electrochemical proton gradient for adenosine triphosphate synthesis []. Cytochrome gamma subunit of formate dehydrogenase-N (Fdn-N), which acts as a major component of Escherichia coli nitrate respiration []. ; GO: 0022904 respiratory electron transport chain, 0016020 membrane; PDB: 1KQG_C 1KQF_C.
Probab=42.69 E-value=67 Score=31.73 Aligned_cols=27 Identities=7% Similarity=-0.137 Sum_probs=22.5
Q ss_pred cchhhHHHHHHHHHHHHHHHHHHhhhc
Q 003558 440 DDNLNFHKVIAVGISIGVGIHAISHLA 466 (811)
Q Consensus 440 d~~~~fHk~ig~~~~~~~~lH~i~~l~ 466 (811)
.....+|+++|.+.++..+++.+..+.
T Consensus 44 ~~~~~~H~~~G~~~~~~~~~~~~~~~~ 70 (188)
T PF00033_consen 44 QLLRWLHFSLGIVFLALFLLRILWRLF 70 (188)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHGG
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 445689999999999999999887663
No 224
>PF09068 EF-hand_2: EF hand; InterPro: IPR015153 Like other EF hand domains, this domain forms a helix-loop-helix motif, though since it does not contain the canonical pattern of calcium binding residues found in many EF hand domains, it does not bind calcium ions. The main function of this domain is the provision of specificity in beta-dystroglycan recognition, though in dystrophin it serves an additional role: stabilisation of the WW domain (IPR001202 from INTERPRO), enhancing dystroglycan binding []. ; PDB: 1EG3_A 1EG4_A.
Probab=41.83 E-value=3.1e+02 Score=26.00 Aligned_cols=103 Identities=16% Similarity=0.166 Sum_probs=59.3
Q ss_pred HHHHHHHHccCCCCCCceeHHHHHHHHHH--h-----ccCChHHHHHHHhhhhcCCC--CCceeHHHHHHHHHhhh----
Q 003558 207 VELFDALTRRRNIQGDTITKDQLREFWDQ--I-----SDQSFDSRLQTFFDMVDKDA--DGRITEDEVREIISLSA---- 273 (811)
Q Consensus 207 ~~lf~~l~d~d~~~~G~I~~~EF~~~~~~--l-----~~~~~~e~l~~~F~~fDkD~--dG~It~eE~~~il~~~~---- 273 (811)
.++++.+.+ =+.|-|.-|..+++- + .+.-+-..+..+|+....+. |..|+..|+..++....
T Consensus 3 ~~l~~~l~~-----~n~IrfsaYRtA~KLR~lQk~~~l~lv~l~~v~~~f~~~~l~~~~d~~l~v~~l~~~L~~iy~~l~ 77 (127)
T PF09068_consen 3 TELMQELQD-----FNNIRFSAYRTAMKLRFLQKRLCLDLVDLSNVIEAFREHGLNQSNDSSLSVSQLETLLSSIYEFLN 77 (127)
T ss_dssp HHHHHHGGG-----GTT-SSHHHHHHHHHHHHHHHTTGGG--HHHHHHHHHHTT---T-TSEEEHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHH-----HhhHHHHHhHHHHHHHHHHHHHhheeeeHHHHHHHHHHcCCCcccCCCCCHHHHHHHHHHHHHHHH
Confidence 345665433 256778888887652 2 12233456777888777654 47899999999986322
Q ss_pred -ccCCCcchH-----HHHHHHHHHHHHHcCCCCCCcccHHHHHHHHH
Q 003558 274 -SANKLSNIQ-----KQAEEYAALIMEELDPDHLGCIMIDNLEMLLL 314 (811)
Q Consensus 274 -~~~~l~~~~-----~~~~e~~~~i~~e~D~d~dG~Is~eEF~~~l~ 314 (811)
.......+. .-++-.+.-++.-+|++++|.|+.-+|...+.
T Consensus 78 ~~~p~~~~i~~~~v~~a~~L~ln~Ll~vyD~~rtG~I~vls~KvaL~ 124 (127)
T PF09068_consen 78 KRLPTLHQIPSRPVDLAVDLLLNWLLNVYDSQRTGKIRVLSFKVALI 124 (127)
T ss_dssp HHSTTS--HH-----HHHHHHHHHHHHHH-TT--SEEEHHHHHHHHH
T ss_pred HHCCCCCCCCchhHHHHHHHHHHHHHHHhCCCCCCeeehhHHHHHHH
Confidence 112222211 22344567778889999999999999987653
No 225
>KOG1955 consensus Ral-GTPase effector RALBP1 [Intracellular trafficking, secretion, and vesicular transport]
Probab=41.80 E-value=15 Score=41.87 Aligned_cols=66 Identities=6% Similarity=0.139 Sum_probs=44.1
Q ss_pred ccHHHHHHHHHhHccCCCCceehhhhccccc-CCCCCHHHHHHHHHHHHccCCCCCCceeHHHHHHHHHHh
Q 003558 167 AGWANVEKRFDEITASTNGVLPRARFGECIG-MNKDSKDFAVELFDALTRRRNIQGDTITKDQLREFWDQI 236 (811)
Q Consensus 167 ~~~~~l~~~F~~lD~d~dG~Is~~ef~~~lg-~~~~~~~~~~~lf~~l~d~d~~~~G~I~~~EF~~~~~~l 236 (811)
++-+-.-+.|+.+-.|-+|.|+=.--+..+. .+. .-+++.-|++ |.|.|. ||.+++.||.+++..+
T Consensus 228 EQReYYvnQFrtvQpDp~gfisGsaAknFFtKSkl-pi~ELshIWe-LsD~d~--DGALtL~EFcAAfHLV 294 (737)
T KOG1955|consen 228 EQREYYVNQFRTVQPDPHGFISGSAAKNFFTKSKL-PIEELSHIWE-LSDVDR--DGALTLSEFCAAFHLV 294 (737)
T ss_pred HHHHHHHhhhhcccCCcccccccHHHHhhhhhccC-chHHHHHHHh-hcccCc--cccccHHHHHhhHhhe
Confidence 3345556678888777888887555555552 222 3355677777 677777 8888888888887654
No 226
>KOG1955 consensus Ral-GTPase effector RALBP1 [Intracellular trafficking, secretion, and vesicular transport]
Probab=41.17 E-value=41 Score=38.56 Aligned_cols=63 Identities=21% Similarity=0.231 Sum_probs=47.4
Q ss_pred HHHHHHhhhhcCCCCCceeHHHHHHHHHhhhccCCCcchHHHHHHHHHHHHHHcCCCCCCcccHHHHHHHHHh
Q 003558 243 SRLQTFFDMVDKDADGRITEDEVREIISLSASANKLSNIQKQAEEYAALIMEELDPDHLGCIMIDNLEMLLLQ 315 (811)
Q Consensus 243 e~l~~~F~~fDkD~dG~It~eE~~~il~~~~~~~~l~~~~~~~~e~~~~i~~e~D~d~dG~Is~eEF~~~l~~ 315 (811)
+..-.-|+.+-.|-+|+|+-.--++++.. .++.. +.+..|.+-.|.|+||-+++.||+..|.-
T Consensus 231 eYYvnQFrtvQpDp~gfisGsaAknFFtK----Sklpi------~ELshIWeLsD~d~DGALtL~EFcAAfHL 293 (737)
T KOG1955|consen 231 EYYVNQFRTVQPDPHGFISGSAAKNFFTK----SKLPI------EELSHIWELSDVDRDGALTLSEFCAAFHL 293 (737)
T ss_pred HHHHhhhhcccCCcccccccHHHHhhhhh----ccCch------HHHHHHHhhcccCccccccHHHHHhhHhh
Confidence 34556688889999999998888888752 23331 12344777799999999999999998863
No 227
>KOG1265 consensus Phospholipase C [Lipid transport and metabolism]
Probab=39.21 E-value=1.5e+02 Score=36.86 Aligned_cols=128 Identities=13% Similarity=0.253 Sum_probs=80.7
Q ss_pred cCCCCceehhhhcccccCCCCCHHHHHHHHHHHHccC--CCCCCce-----eHHHHHHHHHHhccCChHHHHHHHhhhhc
Q 003558 181 ASTNGVLPRARFGECIGMNKDSKDFAVELFDALTRRR--NIQGDTI-----TKDQLREFWDQISDQSFDSRLQTFFDMVD 253 (811)
Q Consensus 181 ~d~dG~Is~~ef~~~lg~~~~~~~~~~~lf~~l~d~d--~~~~G~I-----~~~EF~~~~~~l~~~~~~e~l~~~F~~fD 253 (811)
.|.+|+|....+.+.+.... .+ .++..++.... .+.++.| +++.|..++..+ .+..+++.+|..+-
T Consensus 159 vn~~grip~knI~k~F~~~k-~~---KrVe~al~~~gLp~~k~dsI~~d~f~~e~f~~~l~kl---cpR~eie~iF~ki~ 231 (1189)
T KOG1265|consen 159 VNFEGRIPVKNIIKTFSADK-KE---KRVEKALEACGLPSGKNDSIEPDDFTLEKFYRLLNKL---CPRPEIEEIFRKIS 231 (1189)
T ss_pred ccccccccHHHHHHHhhcCC-ch---hHHHHHHHhcCCCCCCcCccChhhccHHHHHHHHHhc---CCchhHHHHHHHhc
Confidence 35678888888877775432 11 34444443321 1112344 455555555555 44567999999999
Q ss_pred CCCCCceeHHHHHHHHHhhhccCCCcchHH-H-HHHHHHHHHHHcCCCC----CCcccHHHHHHHHHh
Q 003558 254 KDADGRITEDEVREIISLSASANKLSNIQK-Q-AEEYAALIMEELDPDH----LGCIMIDNLEMLLLQ 315 (811)
Q Consensus 254 kD~dG~It~eE~~~il~~~~~~~~l~~~~~-~-~~e~~~~i~~e~D~d~----dG~Is~eEF~~~l~~ 315 (811)
-|..-+.|.++|..+|...-....+.++-- . -.+.+..+++...+|+ +|.|+-+-|...+..
T Consensus 232 ~~~kpylT~~ql~dfln~~QrDpRLNeilfp~~~~~r~~~liekyEp~~~~a~~gqms~dgf~ryl~g 299 (1189)
T KOG1265|consen 232 GKKKPYLTKEQLVDFLNKKQRDPRLNEILFPPADPRRIQSLIEKYEPNSDNAEKGQMSTDGFVRYLMG 299 (1189)
T ss_pred cCCCccccHHHHHHHHhhhccCcchhhhhcCCCCHHHHHHHHHHcCCchhhhhccccchhhhHHHhhC
Confidence 999899999999999975544444432110 0 1334556777776665 488999999987765
No 228
>PF08726 EFhand_Ca_insen: Ca2+ insensitive EF hand; InterPro: IPR014837 EF hands are helix-loop-helix binding motifs involved in the regulation of many cellular processes. EF hands usually bind to Ca2+ ions, which cause a major conformational change that allows the protein to interact with its designated targets. This protein corresponds to an EF hand which has partially or entirely lost its calcium-binding properties. The calcium insensitive EF hand is still able to mediate protein-protein recognition []. ; PDB: 1H8B_A 1SJJ_B.
Probab=39.19 E-value=13 Score=31.38 Aligned_cols=60 Identities=7% Similarity=0.159 Sum_probs=38.0
Q ss_pred HHHHHHHHHhHccCCCCceehhhhcccccCCCCCHHHHHHHHHHHHccCC-CCCCceeHHHHHH
Q 003558 169 WANVEKRFDEITASTNGVLPRARFGECIGMNKDSKDFAVELFDALTRRRN-IQGDTITKDQLRE 231 (811)
Q Consensus 169 ~~~l~~~F~~lD~d~dG~Is~~ef~~~lg~~~~~~~~~~~lf~~l~d~d~-~~~G~I~~~EF~~ 231 (811)
-+++.+.|+.+ +++.+.|+.+||...+.... . +++.+-+....+.++ ...|..||..|..
T Consensus 5 ~eqv~~aFr~l-A~~KpyVT~~dLr~~l~pe~-a-ey~~~~Mp~~~~~~~~~~~~~~DY~~f~~ 65 (69)
T PF08726_consen 5 AEQVEEAFRAL-AGGKPYVTEEDLRRSLTPEQ-A-EYCISRMPPYEGPDGDAIPGAYDYESFTN 65 (69)
T ss_dssp CHHHHHHHHHH-CTSSSCEEHHHHHHHS-CCC-H-HHHHCCSEC--SSS----TTEEECHHHHC
T ss_pred HHHHHHHHHHH-HcCCCcccHHHHHHHcCcHH-H-HHHHHHCcccCCCCcCCCCCCcCHHHHHH
Confidence 47799999999 45789999999999886554 2 444433332222221 1137899998864
No 229
>PF01794 Ferric_reduct: Ferric reductase like transmembrane component; InterPro: IPR013130 This family includes a common region in the transmembrane proteins mammalian cytochrome b-245 heavy chain (gp91-phox), ferric reductase transmembrane component in yeast and respiratory burst oxidase from Arabidopsis thaliana. This may be a family of flavocytochromes capable of moving electrons across the plasma membrane [] that include a potential FAD binding domain. Mutations in the sequence of cytochrome b-245 heavy chain (gp91-phox) lead to the X-linked chronic granulomatous disease. The bacteriocidal ability of phagocytic cells is reduced and is characterised by the absence of a functional plasma membrane associated NADPH oxidase [].; GO: 0005506 iron ion binding, 0009055 electron carrier activity, 0016491 oxidoreductase activity, 0050660 flavin adenine dinucleotide binding, 0016021 integral to membrane
Probab=37.83 E-value=65 Score=29.48 Aligned_cols=51 Identities=25% Similarity=0.485 Sum_probs=32.0
Q ss_pred HHHHHHHHHHHHHhcchhhhcccCCCCCccc--cccchhHHHHHHHHHHHH-HHHHHHHhhhh
Q 003558 506 GIVMVVLMAIAFTLATPWFRRNKLNLPKPLK--KLTGFNAFWYSHHLFVIV-YTLLIVHGQYL 565 (811)
Q Consensus 506 Giv~~v~~~i~~~~s~~~~Rr~~~~~~~p~~--~~~~ye~F~~~H~l~~i~-~vll~~H~~~~ 565 (811)
|+++++.+.+.+.++. |.+ |+. ....++.+...|+.++.+ +++..+|+...
T Consensus 2 G~~a~~~l~~~~~l~~---R~~------~l~~~~~~~~~~~~~~Hr~lg~~~~~~~~~H~~~~ 55 (125)
T PF01794_consen 2 GILAFALLPLVFLLGL---RNS------PLARLTGISFDRLLRFHRWLGRLAFFLALLHGVLY 55 (125)
T ss_pred HHHHHHHHHHHHHHHH---hhh------HHHHHhCCCHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 6666666666666552 322 111 113588899999998865 45568998743
No 230
>KOG0042 consensus Glycerol-3-phosphate dehydrogenase [Energy production and conversion]
Probab=37.56 E-value=19 Score=42.09 Aligned_cols=50 Identities=12% Similarity=0.099 Sum_probs=30.2
Q ss_pred CCceeHHHHHHHHHHhccCChHHHHHHHhhhhcCCCCCceeHHHHHHHHH
Q 003558 221 GDTITKDQLREFWDQISDQSFDSRLQTFFDMVDKDADGRITEDEVREIIS 270 (811)
Q Consensus 221 ~G~I~~~EF~~~~~~l~~~~~~e~l~~~F~~fDkD~dG~It~eE~~~il~ 270 (811)
.|.++.++.+.++.....+-+++.+...-+..|.+-+|++..+||.+++.
T Consensus 607 ~~~~~i~~v~~vlk~~~~~~d~~~~~~~l~ea~~~~~g~v~l~e~~q~~s 656 (680)
T KOG0042|consen 607 KAYQAIADVLKVLKSENVGWDEDRLHEELQEADENLNGFVELREFLQLMS 656 (680)
T ss_pred HHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHhhcceeeHHHHHHHHH
Confidence 45666666666665555555555666666666666666666666665554
No 231
>KOG4403 consensus Cell surface glycoprotein STIM, contains SAM domain [General function prediction only]
Probab=37.28 E-value=1.6e+02 Score=33.43 Aligned_cols=50 Identities=18% Similarity=0.210 Sum_probs=28.7
Q ss_pred CCceeHHHHHHHHHH-hccCChHHHHHHHhhhhcCCCCCceeHHHHHHHHHhhhc
Q 003558 221 GDTITKDQLREFWDQ-ISDQSFDSRLQTFFDMVDKDADGRITEDEVREIISLSAS 274 (811)
Q Consensus 221 ~G~I~~~EF~~~~~~-l~~~~~~e~l~~~F~~fDkD~dG~It~eE~~~il~~~~~ 274 (811)
+|.|+.+|=-+++.. +.-.+...+=+..|.. .|-.||.+|+-+.+..+..
T Consensus 82 nG~Id~~ESdeFlrEdmky~~~~~kr~~~fH~----dD~~ItVedLWeaW~~Sev 132 (575)
T KOG4403|consen 82 NGSIDVEESDEFLREDMKYRDSTRKRSEKFHG----DDKHITVEDLWEAWKESEV 132 (575)
T ss_pred CCCcccccchHHHHHHhhcccchhhhhhhccC----CccceeHHHHHHHHHhhhh
Confidence 667777665555543 2222222333334543 3558999999999874443
No 232
>PF04876 Tenui_NCP: Tenuivirus major non-capsid protein; InterPro: IPR006960 This entry contains the tenuivirus major non-capsid protein. Proteins accumulate in large amounts in tenuivirus infected cells. They are found in the inclusion bodies that are formed after infection [].
Probab=37.10 E-value=1.2e+02 Score=29.56 Aligned_cols=36 Identities=17% Similarity=0.191 Sum_probs=27.0
Q ss_pred HHHHHHHHHHHHHHcCCCCCCcccHHHHHHHHHhCCccc
Q 003558 282 QKQAEEYAALIMEELDPDHLGCIMIDNLEMLLLQAPAQS 320 (811)
Q Consensus 282 ~~~~~e~~~~i~~e~D~d~dG~Is~eEF~~~l~~~p~~~ 320 (811)
++|+.+.++.|++-+..+ .++=|++..++++.|.+.
T Consensus 130 k~Qik~L~~~Ii~~akae---~~dtE~Ye~vwkKmPaY~ 165 (175)
T PF04876_consen 130 KDQIKTLCEQIIEMAKAE---SSDTEHYEKVWKKMPAYF 165 (175)
T ss_pred HHHHHHHHHHHHHHHhcc---CCchHHHHHHHHHhhHHH
Confidence 567777777777766433 467789999999999874
No 233
>KOG2243 consensus Ca2+ release channel (ryanodine receptor) [Signal transduction mechanisms]
Probab=36.08 E-value=29 Score=44.02 Aligned_cols=57 Identities=11% Similarity=0.237 Sum_probs=39.1
Q ss_pred HHHhHccCCCCceehhhhcccccC-CCCCHHHHHHHHHHHHccCCCCCCceeHHHHHHHHH
Q 003558 175 RFDEITASTNGVLPRARFGECIGM-NKDSKDFAVELFDALTRRRNIQGDTITKDQLREFWD 234 (811)
Q Consensus 175 ~F~~lD~d~dG~Is~~ef~~~lg~-~~~~~~~~~~lf~~l~d~d~~~~G~I~~~EF~~~~~ 234 (811)
.|+.+|+|+.|.|+..||.++|.. +..++.+++-+... +..|. ++..+|+||++-+.
T Consensus 4062 tfkeydpdgkgiiskkdf~kame~~k~ytqse~dfllsc-ae~de--nd~~~y~dfv~rfh 4119 (5019)
T KOG2243|consen 4062 TFKEYDPDGKGIISKKDFHKAMEGHKHYTQSEIDFLLSC-AEADE--NDMFDYEDFVDRFH 4119 (5019)
T ss_pred cchhcCCCCCccccHHHHHHHHhccccchhHHHHHHHHh-hccCc--cccccHHHHHHHhc
Confidence 466778899999999999999843 21133444444442 44444 78999999987543
No 234
>PF05517 p25-alpha: p25-alpha ; InterPro: IPR008907 This family encodes a 25 kDa protein that is phosphorylated by a Ser/Thr-Pro kinase []. It has been described as a brain specific protein, but it is found in Tetrahymena thermophila.; PDB: 1WLM_A 1PUL_A 2JRF_A.
Probab=36.03 E-value=97 Score=30.39 Aligned_cols=60 Identities=13% Similarity=0.188 Sum_probs=37.7
Q ss_pred HHHHHhH---ccCCCCceehhhhcccc------cCCCCCHHHHHHHHHHHHccCCCCCCceeHHHHHHHHHHh
Q 003558 173 EKRFDEI---TASTNGVLPRARFGECI------GMNKDSKDFAVELFDALTRRRNIQGDTITKDQLREFWDQI 236 (811)
Q Consensus 173 ~~~F~~l---D~d~dG~Is~~ef~~~l------g~~~~~~~~~~~lf~~l~d~d~~~~G~I~~~EF~~~~~~l 236 (811)
+++|..+ ...+...++-..|.+++ +-+- +...+.-+|... ...+ ...|+|++|++++..+
T Consensus 2 ~~~F~~f~~fG~~~~~~m~~~~F~Kl~kD~~i~d~k~-t~tdvDiiF~Kv-k~k~--~~~I~f~~F~~aL~~l 70 (154)
T PF05517_consen 2 EAVFKAFASFGKKNGTEMDSKNFAKLCKDCGIIDKKL-TSTDVDIIFSKV-KAKG--ARKITFEQFLEALAEL 70 (154)
T ss_dssp HHHHHHHHCSSTSTSSEEEHHHHHHHHHHTSS--SSS--HHHHHHHHHHH-T-SS---SEEEHHHHHHHHHHH
T ss_pred HHHHHHHHHhcCCccccccHHHHHHHHHHcCCCCCCC-chHHHHHHHHHh-hcCC--CcccCHHHHHHHHHHH
Confidence 4445555 33355678888887766 2233 556677788853 2222 4679999999999776
No 235
>PF01292 Ni_hydr_CYTB: Prokaryotic cytochrome b561; InterPro: IPR011577 Cytochrome b561 is an integral membrane and electron transport protein, that binds two haem groups non-covalently. This domain is also found in a number of nickel-dependent hydrogenase subunits which are also B-type cytochromes that interact with quinones and anchor the hydrogenase to the membrane. Members of the 'eukaryotic cytochrome b561' family can be found in IPR004877 from INTERPRO.; GO: 0009055 electron carrier activity, 0016021 integral to membrane
Probab=35.96 E-value=2.8e+02 Score=27.23 Aligned_cols=22 Identities=9% Similarity=0.037 Sum_probs=18.6
Q ss_pred hhHHHHHHHHHHHHHHHHHHhh
Q 003558 443 LNFHKVIAVGISIGVGIHAISH 464 (811)
Q Consensus 443 ~~fHk~ig~~~~~~~~lH~i~~ 464 (811)
...|.++|.++++..+++....
T Consensus 43 ~~~H~~~G~~~~~~~~~~l~~~ 64 (182)
T PF01292_consen 43 RNWHVIAGLLLFALLIFRLLWR 64 (182)
T ss_pred HhHHHHHHHHHHHHHHHHHHHH
Confidence 6789999999999988887655
No 236
>PF09842 DUF2069: Predicted membrane protein (DUF2069); InterPro: IPR018643 This family of prokaryotic proteins has no known function but is thought to be a membrane protein.
Probab=35.87 E-value=3.2e+02 Score=25.24 Aligned_cols=52 Identities=17% Similarity=0.102 Sum_probs=34.0
Q ss_pred hHHHHHHHHHHHHHHHHHHhhhccccceeeecCcCccCCCCcccCCCCcchhhhhhcchhHHHHHHHHHHHHHHHhcchh
Q 003558 444 NFHKVIAVGISIGVGIHAISHLACDFPRLINASEEKYEPMEPYFGDQPKNYWHFVKSVEGVTGIVMVVLMAIAFTLATPW 523 (811)
Q Consensus 444 ~fHk~ig~~~~~~~~lH~i~~l~~~f~~~~~~~~~~~~~~~~~~~~~~~~y~~~~~~~~~~tGiv~~v~~~i~~~~s~~~ 523 (811)
.=|.|.+.++.+. .+|++.... + .+. +.+.|++.+++.+++|+.++-+
T Consensus 54 ~t~~W~sfv~L~Y-F~~gv~~a~--------~--------------~~~---------~~~~a~~e~~ls~~lF~~~~~y 101 (109)
T PF09842_consen 54 YTYAWASFVILLY-FIHGVTRAW--------S--------------DPG---------ERWLAWLELLLSVLLFVGAMLY 101 (109)
T ss_pred HHHHHHHHHHHHH-HHHHHHHHh--------c--------------Ccc---------hhHHHHHHHHHHHHHHHHHHHH
Confidence 5689999866555 589987652 1 010 1245777777777777888888
Q ss_pred hhcc
Q 003558 524 FRRN 527 (811)
Q Consensus 524 ~Rr~ 527 (811)
.|.+
T Consensus 102 ~R~r 105 (109)
T PF09842_consen 102 ARWR 105 (109)
T ss_pred HHHH
Confidence 8865
No 237
>COG4097 Predicted ferric reductase [Inorganic ion transport and metabolism]
Probab=34.14 E-value=79 Score=35.49 Aligned_cols=64 Identities=22% Similarity=0.308 Sum_probs=42.8
Q ss_pred hhhhhhcchhHHHHHHHHHHHHHHHhcchhhhcccCCCCCccccccchhHHHHHHHHHHHH-HHHHHHHhhhh
Q 003558 494 YWHFVKSVEGVTGIVMVVLMAIAFTLATPWFRRNKLNLPKPLKKLTGFNAFWYSHHLFVIV-YTLLIVHGQYL 565 (811)
Q Consensus 494 y~~~~~~~~~~tGiv~~v~~~i~~~~s~~~~Rr~~~~~~~p~~~~~~ye~F~~~H~l~~i~-~vll~~H~~~~ 565 (811)
-|.+..+..-.+|++++.+|++++.+|++.-+=- +++ -+-+.-|..|...+++ ++++++|....
T Consensus 33 ~~s~~~~~~qf~g~iaL~~msl~~~LA~R~~~iE-----~~~---~GlD~~Y~~HK~~sIlailL~l~H~~~~ 97 (438)
T COG4097 33 LLSWRLEFSQFLGFIALALMSLIFLLATRLPLIE-----AWF---NGLDKIYRFHKYTSILAILLLLAHNFIL 97 (438)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhchHHHh-----hhh---hhhhHHhHHHHHHHHHHHHHHHHHHHHH
Confidence 3455566667889999999999999887654321 111 1235667889987765 55678887643
No 238
>PLN02952 phosphoinositide phospholipase C
Probab=33.70 E-value=95 Score=37.32 Aligned_cols=84 Identities=17% Similarity=0.214 Sum_probs=55.4
Q ss_pred CCCceehhhhcccc---cCCC-CCHHHHHHHHHHHHccCCCCCCceeHHHHHHHHHHhccC--ChHHHHHHHhhhh----
Q 003558 183 TNGVLPRARFGECI---GMNK-DSKDFAVELFDALTRRRNIQGDTITKDQLREFWDQISDQ--SFDSRLQTFFDMV---- 252 (811)
Q Consensus 183 ~dG~Is~~ef~~~l---g~~~-~~~~~~~~lf~~l~d~d~~~~G~I~~~EF~~~~~~l~~~--~~~e~l~~~F~~f---- 252 (811)
+.|.+++++|..+. ..+. ....++.++|..+.. + ++.++.++|..++...... ...+.++.+|+.+
T Consensus 13 ~~g~l~f~~f~~f~~~~k~~~~~~r~ei~~lf~~~~~--~--~~~mt~~~l~~FL~~~Q~e~~~~~~~~~~i~~~~~~~~ 88 (599)
T PLN02952 13 DSGSYNYKMFNLFNRKFKITEAEPPDDVKDVFCKFSV--G--GGHMGADQLRRFLVLHQDELDCTLAEAQRIVEEVINRR 88 (599)
T ss_pred cCCCcCHHHHHHHHHHhccccCCChHHHHHHHHHHhC--C--CCccCHHHHHHHHHHhCCCcCCCHHHHHHHHHHHHhhc
Confidence 46899999996543 2211 034678889986542 2 4689999999999887543 3345555555433
Q ss_pred ---cCCCCCceeHHHHHHHHH
Q 003558 253 ---DKDADGRITEDEVREIIS 270 (811)
Q Consensus 253 ---DkD~dG~It~eE~~~il~ 270 (811)
.+.+.+.++.+.|...|.
T Consensus 89 ~~~~~~~~~~l~~~~F~~~l~ 109 (599)
T PLN02952 89 HHVTRYTRHGLNLDDFFHFLL 109 (599)
T ss_pred cccccccccCcCHHHHHHHHc
Confidence 122345689999888884
No 239
>PF14358 DUF4405: Domain of unknown function (DUF4405)
Probab=32.02 E-value=46 Score=27.34 Aligned_cols=25 Identities=20% Similarity=-0.071 Sum_probs=21.7
Q ss_pred cchhhHHHHHHHHHHHHHHHHHHhh
Q 003558 440 DDNLNFHKVIAVGISIGVGIHAISH 464 (811)
Q Consensus 440 d~~~~fHk~ig~~~~~~~~lH~i~~ 464 (811)
+.....|.+.|.+.++++++|...|
T Consensus 39 ~~~~~iH~~~g~~~~~l~~~Hl~lh 63 (64)
T PF14358_consen 39 HFWRNIHLWAGYLFLILIILHLGLH 63 (64)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 3456899999999999999999865
No 240
>PF08414 NADPH_Ox: Respiratory burst NADPH oxidase; InterPro: IPR013623 This domain is found in plant proteins such as respiratory burst NADPH oxidase proteins which produce reactive oxygen species as a defence mechanism. It tends to occur to the N terminus of an EF-hand (IPR002048 from INTERPRO), which suggests a direct regulatory effect of Ca2+ on the activity of the NADPH oxidase in plants []. ; GO: 0004601 peroxidase activity, 0050664 oxidoreductase activity, acting on NADH or NADPH, oxygen as acceptor, 0055114 oxidation-reduction process; PDB: 3A8R_A.
Probab=30.73 E-value=1.1e+02 Score=27.74 Aligned_cols=67 Identities=24% Similarity=0.255 Sum_probs=41.6
Q ss_pred HHHHHHhhhhcCCCCCceeHHHHHHHHHhhhccCCCcchHHHHHHHHHHHHHHcCCCCCCcccHHHHHHHHHhCCcc
Q 003558 243 SRLQTFFDMVDKDADGRITEDEVREIISLSASANKLSNIQKQAEEYAALIMEELDPDHLGCIMIDNLEMLLLQAPAQ 319 (811)
Q Consensus 243 e~l~~~F~~fDkD~dG~It~eE~~~il~~~~~~~~l~~~~~~~~e~~~~i~~e~D~d~dG~Is~eEF~~~l~~~p~~ 319 (811)
..++.=|+.+-+ ||++..++|-+.|-+ +.+ ++-+.|+.+.+-+.-... ...|+.+|+..++.+..+.
T Consensus 30 ~~VE~RFd~La~--dG~L~rs~Fg~CIGM-----~dS--keFA~eLFdALaRrr~i~-~~~I~k~eL~efW~qisD~ 96 (100)
T PF08414_consen 30 KEVEKRFDKLAK--DGLLPRSDFGECIGM-----KDS--KEFAGELFDALARRRGIK-GDSITKDELKEFWEQISDQ 96 (100)
T ss_dssp HHHHHHHHHH-B--TTBEEGGGHHHHHT-------S---HHHHHHHHHHHHHHTT---SSEE-HHHHHHHHHHHH--
T ss_pred HHHHHHHHHhCc--CCcccHHHHHHhcCC-----ccc--HHHHHHHHHHHHHhcCCc-cCCcCHHHHHHHHHHhhcc
Confidence 456777887777 899999999988842 212 444555555444444443 5789999999998876543
No 241
>TIGR01848 PHA_reg_PhaR polyhydroxyalkanoate synthesis repressor PhaR. Poly-B-hydroxyalkanoates are lipidlike carbon/energy storage polymers found in granular inclusions. PhaR is a regulatory protein found in general near other proteins associated with polyhydroxyalkanoate (PHA) granule biosynthesis and utilization. It is found to be a DNA-binding homotetramer that is also capable of binding short chain hydroxyalkanoic acids and PHA granules. PhaR may regulate the expression of itself, of the phasins that coat granules, and of enzymes that direct carbon flux into polymers stored in granules.
Probab=29.80 E-value=1.4e+02 Score=27.49 Aligned_cols=69 Identities=12% Similarity=0.171 Sum_probs=44.7
Q ss_pred hhhcCCCCCceeHHHHHHHHHhhhc----cCCCcchHHHHHHHHHHHHHHcCCCCCCcccHHHHHHHHHhCCccc
Q 003558 250 DMVDKDADGRITEDEVREIISLSAS----ANKLSNIQKQAEEYAALIMEELDPDHLGCIMIDNLEMLLLQAPAQS 320 (811)
Q Consensus 250 ~~fDkD~dG~It~eE~~~il~~~~~----~~~l~~~~~~~~e~~~~i~~e~D~d~dG~Is~eEF~~~l~~~p~~~ 320 (811)
+.||.+.+-+||.+++++++..... .++.. ++-...+.-+|+-|....+...++.+=+..+++-..+.+
T Consensus 10 RLYDT~tS~YITLedi~~lV~~g~~f~V~DakTg--eDiT~~iL~QII~E~E~~g~~~lp~~~L~qlIr~yg~~~ 82 (107)
T TIGR01848 10 RLYDTETSSYVTLEDIRDLVREGREFQVVDSKSG--DDLTRSILLQIIAEEESGGEPVLSTDFLTQIIRFYGGSM 82 (107)
T ss_pred cccCCCccceeeHHHHHHHHHCCCeEEEEECCCC--chhHHHHHHHHHHHHHhCCCCCCCHHHHHHHHHHhChhH
Confidence 4689999999999999999973211 11111 222344445566555556777788887777777665543
No 242
>PRK10639 formate dehydrogenase-O subunit gamma; Provisional
Probab=29.45 E-value=2e+02 Score=29.72 Aligned_cols=23 Identities=13% Similarity=0.179 Sum_probs=17.3
Q ss_pred hhHHHHHHHHHHHHHHH-HHHHhh
Q 003558 541 FNAFWYSHHLFVIVYTL-LIVHGQ 563 (811)
Q Consensus 541 ye~F~~~H~l~~i~~vl-l~~H~~ 563 (811)
.+.....|++.+.++++ +++|..
T Consensus 146 ~~~~~~~H~~~a~~~i~~iivHiy 169 (211)
T PRK10639 146 IRFALMLHSFAAVALIVVIMVHIY 169 (211)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 56788999998876654 577865
No 243
>cd06395 PB1_Map2k5 PB1 domain is essential part of the mitogen-activated protein kinase kinase 5 (Map2k5, alias MEK5) one of the key member of the signaling kinases cascade which involved in angiogenesis and early cardiovascular development. The PB1 domain of Map2k5 interacts with the PB1 domain of another members of kinase cascade MEKK2 (or MEKK3). A canonical PB1-PB1 interaction, involving heterodimerization of two PB1 domain, is required for the formation of macromolecular signaling complexes ensuring specificity and fidelity during cellular signaling. The interaction between two PB1 domain depends on the type of PB1. There are three types of PB1 domains: type I which contains an OPCA motif, acidic aminoacid cluster, type II which contains a basic cluster, and type I/II which contains both an OPCA motif and a basic cluster. The Map2k5 protein contains a type I PB1 domain.
Probab=27.91 E-value=78 Score=27.46 Aligned_cols=44 Identities=25% Similarity=0.447 Sum_probs=33.9
Q ss_pred CceeHHHHHHHHHHhccCChHHHHHHHhhhhcCCCCCcee---HHHHHHHHH
Q 003558 222 DTITKDQLREFWDQISDQSFDSRLQTFFDMVDKDADGRIT---EDEVREIIS 270 (811)
Q Consensus 222 G~I~~~EF~~~~~~l~~~~~~e~l~~~F~~fDkD~dG~It---~eE~~~il~ 270 (811)
-.++|.+.++++.+..... --.+|++=|.||| +|| -||++.++.
T Consensus 21 ~~L~F~DvL~~I~~vlp~a----T~tAFeYEDE~gD-RITVRSDeEm~AMls 67 (91)
T cd06395 21 PQLLFRDVLDVIGQVLPEA----TTTAFEYEDEDGD-RITVRSDEEMKAMLS 67 (91)
T ss_pred ccccHHHHHHHHHHhcccc----cccceeeccccCC-eeEecchHHHHHHHH
Confidence 3599999999998875432 3478999999998 564 688888875
No 244
>KOG3866 consensus DNA-binding protein of the nucleobindin family [General function prediction only]
Probab=27.77 E-value=40 Score=36.43 Aligned_cols=22 Identities=14% Similarity=0.202 Sum_probs=15.0
Q ss_pred HHHhHccCCCCceehhhhcccc
Q 003558 175 RFDEITASTNGVLPRARFGECI 196 (811)
Q Consensus 175 ~F~~lD~d~dG~Is~~ef~~~l 196 (811)
-|...|.|+||.++-.|+..++
T Consensus 249 FF~LHD~NsDGfldeqELEaLF 270 (442)
T KOG3866|consen 249 FFALHDLNSDGFLDEQELEALF 270 (442)
T ss_pred heeeeccCCcccccHHHHHHHH
Confidence 3445566788888877776665
No 245
>cd02977 ArsC_family Arsenate Reductase (ArsC) family; composed of TRX-fold arsenic reductases and similar proteins including the transcriptional regulator, Spx. ArsC catalyzes the reduction of arsenate [As(V)] to arsenite [As(III)], using reducing equivalents derived from glutathione (GSH) via glutaredoxin (GRX), through a single catalytic cysteine. This family of predominantly bacterial enzymes is unrelated to two other families of arsenate reductases which show similarity to low-molecular-weight acid phosphatases and phosphotyrosyl phosphatases. Spx is a general regulator that exerts negative and positive control over transcription initiation by binding to the C-terminal domain of the alpha subunit of RNA polymerase.
Probab=27.76 E-value=1e+02 Score=27.68 Aligned_cols=64 Identities=13% Similarity=0.158 Sum_probs=39.1
Q ss_pred hhhhcCCCCCceeHHHHHHHHHhhhccCCCcchHHHHHHHHH---HHHHHcCCCCCCcccHHHHHHHHHhCCccccc
Q 003558 249 FDMVDKDADGRITEDEVREIISLSASANKLSNIQKQAEEYAA---LIMEELDPDHLGCIMIDNLEMLLLQAPAQSVK 322 (811)
Q Consensus 249 F~~fDkD~dG~It~eE~~~il~~~~~~~~l~~~~~~~~e~~~---~i~~e~D~d~dG~Is~eEF~~~l~~~p~~~~~ 322 (811)
|...|.. +...+.+|+.+++..... ..++.+. ..+++++.+....++-+|..++|.++|..+.+
T Consensus 26 ~~~idi~-~~~~~~~~l~~~~~~~~~---------~~~~li~~~~~~~~~l~~~~~~~ls~~e~~~~l~~~p~LikR 92 (105)
T cd02977 26 YEFIDYL-KEPPTKEELKELLAKLGL---------GVEDLFNTRGTPYRKLGLADKDELSDEEALELMAEHPKLIKR 92 (105)
T ss_pred cEEEeec-cCCCCHHHHHHHHHhcCC---------CHHHHHhcCCchHHHcCCccccCCCHHHHHHHHHhCcCeeeC
Confidence 4444444 235677788877753210 0111111 25556665545678999999999999998753
No 246
>PF13706 PepSY_TM_3: PepSY-associated TM helix
Probab=27.44 E-value=64 Score=23.62 Aligned_cols=17 Identities=6% Similarity=0.051 Sum_probs=12.8
Q ss_pred hhhHHHHHHHHHHHHHH
Q 003558 442 NLNFHKVIAVGISIGVG 458 (811)
Q Consensus 442 ~~~fHk~ig~~~~~~~~ 458 (811)
....|+|+|.++.++..
T Consensus 4 ~~~~H~W~Gl~~g~~l~ 20 (37)
T PF13706_consen 4 LRKLHRWLGLILGLLLF 20 (37)
T ss_pred HHHHHHHHHHHHHHHHH
Confidence 45789999998766654
No 247
>PF00404 Dockerin_1: Dockerin type I repeat; InterPro: IPR018242 Gram-positive, thermophilic anaerobes such as Clostridium thermocellum or Clostridium cellulolyticum secretes a highly active and thermostable cellulase complex (cellulosome) responsible for the degradation of crystalline cellulose [, ]. The cellulosome contains at least 30 polypeptides, the majority of the enzymes are endoglucanases (3.2.1.4 from EC), but there are also some xylanases (3.2.1.8 from EC), beta-glucosidases (3.2.1.21 from EC) and endo-beta-1,3-1,4-glucanases (3.2.1.73 from EC). Complete sequence data for many of these enzymes has been obtained. A majority of these proteins contain a highly conserved type I dockerin domain of about 65 to 70 residues, which is generally (but not always) located in the C terminus. The dockerin domain is the binding partner of the cohesin domain (see IPR002102 from INTERPRO). The cohesin-dockerin interaction is the crucial interaction for complex formation in the cellulosome []. The dockerin domain contains a tandem repeat of two calcium-binding loop-helix motifs (distinct from EF-hand Ca-binding motifs). These motifs are about 24 amino acids in length. This entry represents these repeated Ca-binding motifs.; GO: 0004553 hydrolase activity, hydrolyzing O-glycosyl compounds, 0005975 carbohydrate metabolic process; PDB: 3P0D_J 1OHZ_B 2CCL_B 1DAV_A 1DAQ_A 2VN5_B 2VN6_B.
Probab=26.42 E-value=51 Score=21.20 Aligned_cols=16 Identities=19% Similarity=0.489 Sum_probs=12.0
Q ss_pred cCCCCCceeHHHHHHH
Q 003558 253 DKDADGRITEDEVREI 268 (811)
Q Consensus 253 DkD~dG~It~eE~~~i 268 (811)
|.|+||.|+.-++..+
T Consensus 1 DvN~DG~vna~D~~~l 16 (21)
T PF00404_consen 1 DVNGDGKVNAIDLALL 16 (21)
T ss_dssp -TTSSSSSSHHHHHHH
T ss_pred CCCCCCcCCHHHHHHH
Confidence 7899999998887543
No 248
>KOG4004 consensus Matricellular protein Osteonectin/SPARC/BM-40 [Extracellular structures]
Probab=25.55 E-value=38 Score=34.37 Aligned_cols=29 Identities=10% Similarity=0.414 Sum_probs=23.1
Q ss_pred HHHHHHhHccCCCCceehhhhcccccCCC
Q 003558 172 VEKRFDEITASTNGVLPRARFGECIGMNK 200 (811)
Q Consensus 172 l~~~F~~lD~d~dG~Is~~ef~~~lg~~~ 200 (811)
+..-|+..|.|+||.|+++|+..|+|++.
T Consensus 224 ~~~f~e~cd~~nd~~ial~ew~~c~gikq 252 (259)
T KOG4004|consen 224 TTRFFETCDLDNDKYIALDEWAGCFGIKQ 252 (259)
T ss_pred chhhhhcccCCCCCceeHHHhhcccCcch
Confidence 45567777888888888888888888874
No 249
>PF14145 YrhK: YrhK-like protein
Probab=25.43 E-value=1.2e+02 Score=24.73 Aligned_cols=36 Identities=28% Similarity=0.629 Sum_probs=20.7
Q ss_pred HhhhhhhccccccceeeehhhHHHHHHHHHHHHHHhh
Q 003558 561 HGQYLYLTKKWYKKTTWMYLAIPICLYATERLIRALR 597 (811)
Q Consensus 561 H~~~~~~~~~w~~~~~w~y~~~~~~l~~~dr~~R~~r 597 (811)
=|..+++...++....|.|++. .+++++.-++|.+|
T Consensus 21 iGSilfl~~~~~~~g~wlFiiG-S~~f~i~~~i~~ir 56 (59)
T PF14145_consen 21 IGSILFLPESLYTAGTWLFIIG-SILFLIRPIIRLIR 56 (59)
T ss_pred HHHHHHcCchhHHHHHHHHHHH-HHHHHHHHHHHHHH
Confidence 3444555545555567877654 35666666666654
No 250
>PF09068 EF-hand_2: EF hand; InterPro: IPR015153 Like other EF hand domains, this domain forms a helix-loop-helix motif, though since it does not contain the canonical pattern of calcium binding residues found in many EF hand domains, it does not bind calcium ions. The main function of this domain is the provision of specificity in beta-dystroglycan recognition, though in dystrophin it serves an additional role: stabilisation of the WW domain (IPR001202 from INTERPRO), enhancing dystroglycan binding []. ; PDB: 1EG3_A 1EG4_A.
Probab=25.36 E-value=2.3e+02 Score=26.88 Aligned_cols=104 Identities=18% Similarity=0.260 Sum_probs=58.2
Q ss_pred ccccCchhH-HHHHhhhhhhhccCC--cccHHHHHHHHHhHccCC--CCceehhhhcccccCCCCCHHHHHHHHHHHHcc
Q 003558 142 RFDRNKSAA-AYALKGLKFISKTDG--GAGWANVEKRFDEITAST--NGVLPRARFGECIGMNKDSKDFAVELFDALTRR 216 (811)
Q Consensus 142 ~~dr~~s~a-~~alk~l~~i~~~~~--~~~~~~l~~~F~~lD~d~--dG~Is~~ef~~~lg~~~~~~~~~~~lf~~l~d~ 216 (811)
.||.-+=++ ..|.| +|++++... .-++..+.+.|+...-+. |..++..|+.. .+..+|+.+..+
T Consensus 11 ~~n~IrfsaYRtA~K-LR~lQk~~~l~lv~l~~v~~~f~~~~l~~~~d~~l~v~~l~~----------~L~~iy~~l~~~ 79 (127)
T PF09068_consen 11 DFNNIRFSAYRTAMK-LRFLQKRLCLDLVDLSNVIEAFREHGLNQSNDSSLSVSQLET----------LLSSIYEFLNKR 79 (127)
T ss_dssp GGTT-SSHHHHHHHH-HHHHHHHTTGGG--HHHHHHHHHHTT---T-TSEEEHHHHHH----------HHHHHHHHHHHH
T ss_pred HHhhHHHHHhHHHHH-HHHHHHHHhheeeeHHHHHHHHHHcCCCcccCCCCCHHHHHH----------HHHHHHHHHHHH
Confidence 344444444 45666 588887643 456788888898876432 34555555543 345677544433
Q ss_pred CCCCCCceeH-----HHHHHHHHHhccCChHHHHHHHhhhhcCCCCCceeHHHHHHHHH
Q 003558 217 RNIQGDTITK-----DQLREFWDQISDQSFDSRLQTFFDMVDKDADGRITEDEVREIIS 270 (811)
Q Consensus 217 d~~~~G~I~~-----~EF~~~~~~l~~~~~~e~l~~~F~~fDkD~dG~It~eE~~~il~ 270 (811)
.+ +..+. +.-.+. -+..+..+||.+++|+|+.-+|+-.+.
T Consensus 80 ~p---~~~~i~~~~v~~a~~L-----------~ln~Ll~vyD~~rtG~I~vls~KvaL~ 124 (127)
T PF09068_consen 80 LP---TLHQIPSRPVDLAVDL-----------LLNWLLNVYDSQRTGKIRVLSFKVALI 124 (127)
T ss_dssp ST---TS--HH-----HHHHH-----------HHHHHHHHH-TT--SEEEHHHHHHHHH
T ss_pred CC---CCCCCCchhHHHHHHH-----------HHHHHHHHhCCCCCCeeehhHHHHHHH
Confidence 22 22221 222222 377889999999999999999998774
No 251
>MTH00156 CYTB cytochrome b; Provisional
Probab=25.28 E-value=1e+03 Score=26.82 Aligned_cols=30 Identities=20% Similarity=0.444 Sum_probs=13.8
Q ss_pred hhcchhHHHHHHHHHHHHHHHhcchhhhcc
Q 003558 498 VKSVEGVTGIVMVVLMAIAFTLATPWFRRN 527 (811)
Q Consensus 498 ~~~~~~~tGiv~~v~~~i~~~~s~~~~Rr~ 527 (811)
++..+.-.|-++..+++++.....|++-|+
T Consensus 271 LrsiP~k~gGv~~~~~~i~~l~~lP~l~~~ 300 (356)
T MTH00156 271 LRSIPNKLGGVIALVMSILILMILPFTNKS 300 (356)
T ss_pred HhcCCcchHHHHHHHHHHHHHHHHHHHhhc
Confidence 444444334333333344444456766554
No 252
>MTH00074 CYTB cytochrome b; Provisional
Probab=25.17 E-value=7.9e+02 Score=27.92 Aligned_cols=19 Identities=26% Similarity=0.256 Sum_probs=8.7
Q ss_pred hhhHHHHHHHHHHHHHHHH
Q 003558 442 NLNFHKVIAVGISIGVGIH 460 (811)
Q Consensus 442 ~~~fHk~ig~~~~~~~~lH 460 (811)
+..+|=.+..++++++.+|
T Consensus 179 ff~lH~llP~~il~l~~~H 197 (380)
T MTH00074 179 FFAFHFLLPFLIAGASIIH 197 (380)
T ss_pred HHHHHHHHHHHHHHHHHhh
Confidence 3344444444444444444
No 253
>PF03929 PepSY_TM: PepSY-associated TM helix; InterPro: IPR005625 This domain represents a conserved transmembrane (TM) helix that is found in bacterial proteins. Coil residues are significantly more conserved than other residues and are frequently found within channels and transporters, where they introduce the flexibility and polarity required for transport across the membrane []. This TM helix associates with PepSY (peptidase (M4) and YpeB of subtilis). PepSY is a repeated region first identified in Thermoanaerobacter tengcongensis. The PepSY domain functions in the control of M4 peptidases through their propeptide and in the germination of spores. It may also play a part in regulating protease activity [].
Probab=23.98 E-value=1.1e+02 Score=20.96 Aligned_cols=20 Identities=20% Similarity=0.139 Sum_probs=15.2
Q ss_pred hhHHHHHHHHHHHHHHHHHH
Q 003558 443 LNFHKVIAVGISIGVGIHAI 462 (811)
Q Consensus 443 ~~fHk~ig~~~~~~~~lH~i 462 (811)
..+|||++-++++..++=++
T Consensus 2 ~~LH~w~~~i~al~~lv~~i 21 (27)
T PF03929_consen 2 NDLHKWFGDIFALFMLVFAI 21 (27)
T ss_pred hHHHHHHHHHHHHHHHHHHH
Confidence 46899999888777766554
No 254
>PRK13553 fumarate reductase cytochrome b-556 subunit; Provisional
Probab=23.54 E-value=1.3e+02 Score=32.24 Aligned_cols=108 Identities=13% Similarity=0.199 Sum_probs=54.3
Q ss_pred hHHHHHHHHHHHHHHHHHHhhhccccceeeecCcCccCCCCcccCCCCcchhhhhhcchhHHHHHHHHHHHHHHHhcchh
Q 003558 444 NFHKVIAVGISIGVGIHAISHLACDFPRLINASEEKYEPMEPYFGDQPKNYWHFVKSVEGVTGIVMVVLMAIAFTLATPW 523 (811)
Q Consensus 444 ~fHk~ig~~~~~~~~lH~i~~l~~~f~~~~~~~~~~~~~~~~~~~~~~~~y~~~~~~~~~~tGiv~~v~~~i~~~~s~~~ 523 (811)
..|...|.++.++.+.|.+.-... + -+++.++.+..++...+ . .-.+.+.++.++++++++++++-+.--
T Consensus 26 ~~qSltGviLglFl~~Hm~~~ssi-----l-~G~~afn~va~f~E~~~---~-~~~g~p~~~sl~~~~I~l~~l~Ha~la 95 (258)
T PRK13553 26 FLQSATGLFLGLFMWAHMFFVSTI-----L-ISDDAMYKVAKFFEGSF---F-FKAGEPALVSFVAAGVILIFVVHAFLA 95 (258)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH-----H-cCHHHHHHHHHHHhhCc---c-ccCCcchhHHHHHHHHHHHHHHHHHHH
Confidence 579999999999999998643321 1 12233332222221111 0 001122345566666555556666666
Q ss_pred hhcccCCCCCccccccchhHH-----------HHHHHHHHH-HHHHHHHHhhhh
Q 003558 524 FRRNKLNLPKPLKKLTGFNAF-----------WYSHHLFVI-VYTLLIVHGQYL 565 (811)
Q Consensus 524 ~Rr~~~~~~~p~~~~~~ye~F-----------~~~H~l~~i-~~vll~~H~~~~ 565 (811)
.|+ +|.-.++...+..+ |+.-.+.++ ++++..+|-...
T Consensus 96 lrk----~P~n~~q~~~~r~h~~~m~H~DT~lW~~Q~iTG~ilf~~~~~Hl~~i 145 (258)
T PRK13553 96 MRK----FPINYRQYQIFRTHKHLMKHGDTSLWFIQAFTGFAMFFLASVHLYVM 145 (258)
T ss_pred Hhh----CCCCHHHHHHHHHHHhhccCCccchHHHHHHHHHHHHHHHHHHHHhh
Confidence 664 34333332222222 444455554 455668887644
No 255
>PF05297 Herpes_LMP1: Herpesvirus latent membrane protein 1 (LMP1); InterPro: IPR007961 This family consists of several latent membrane protein 1 or LMP1s mostly from Epstein-Barr virus (strain GD1) (HHV-4) (Human herpesvirus 4). LMP1 of HHV-4 is a 62-65 kDa plasma membrane protein possessing six membrane spanning regions, a short cytoplasmic N terminus and a long cytoplasmic carboxy tail of 200 amino acids. HHV-4 virus latent membrane protein 1 (LMP1) is essential for HHV-4 mediated transformation and has been associated with several cases of malignancies. HHV-4-like viruses in Macaca fascicularis (Cynomolgus monkeys) have been associated with high lymphoma rates in immunosuppressed monkeys [].; GO: 0019087 transformation of host cell by virus, 0016021 integral to membrane; PDB: 1CZY_E 1ZMS_B.
Probab=22.41 E-value=29 Score=37.09 Aligned_cols=14 Identities=21% Similarity=0.624 Sum_probs=0.0
Q ss_pred eeehhhHHHHHHHH
Q 003558 576 TWMYLAIPICLYAT 589 (811)
Q Consensus 576 ~w~y~~~~~~l~~~ 589 (811)
+|+.+..++.||.+
T Consensus 171 ~WL~LFlaiLIWlY 184 (381)
T PF05297_consen 171 YWLLLFLAILIWLY 184 (381)
T ss_dssp --------------
T ss_pred HHHHHHHHHHHHHH
Confidence 45544455666654
No 256
>KOG4489 consensus Uncharacterized conserved protein BC10 (implicated in bladder cancer in humans) [Function unknown]
Probab=21.80 E-value=1.2e+02 Score=25.98 Aligned_cols=24 Identities=29% Similarity=0.646 Sum_probs=18.0
Q ss_pred CCCccccccchhHHHHHHHHHHHHHHHHH
Q 003558 531 LPKPLKKLTGFNAFWYSHHLFVIVYTLLI 559 (811)
Q Consensus 531 ~~~p~~~~~~ye~F~~~H~l~~i~~vll~ 559 (811)
+|||++ -.++..|..|..+|++.+
T Consensus 13 IPKp~n-----Pal~~~h~mFm~fYlvgF 36 (87)
T KOG4489|consen 13 IPKPIN-----PALLVEHAMFMWFYLVGF 36 (87)
T ss_pred cCCCCC-----hHHHHHHHHHHHHHHHHH
Confidence 466654 479999999988887643
No 257
>PRK11513 cytochrome b561; Provisional
Probab=21.68 E-value=8.1e+02 Score=24.42 Aligned_cols=24 Identities=13% Similarity=0.084 Sum_probs=18.9
Q ss_pred hhhHHHHHHHHHHHHHHHHHHhhh
Q 003558 442 NLNFHKVIAVGISIGVGIHAISHL 465 (811)
Q Consensus 442 ~~~fHk~ig~~~~~~~~lH~i~~l 465 (811)
.+.+|+.+|.++++++++=.+.-+
T Consensus 41 ~~~~H~s~G~~vl~L~v~Rl~~r~ 64 (176)
T PRK11513 41 INMIHVSCGISILVLMVVRLLLRL 64 (176)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHh
Confidence 447899999999999887766444
No 258
>MTH00053 CYTB cytochrome b; Provisional
Probab=21.43 E-value=6.4e+02 Score=28.67 Aligned_cols=20 Identities=10% Similarity=0.064 Sum_probs=9.4
Q ss_pred chhhHHHHHHHHHHHHHHHH
Q 003558 441 DNLNFHKVIAVGISIGVGIH 460 (811)
Q Consensus 441 ~~~~fHk~ig~~~~~~~~lH 460 (811)
++..+|=.+..++++++.+|
T Consensus 178 Rff~lH~~lP~~i~~l~~~H 197 (381)
T MTH00053 178 RFYSLHYLLPFILAGLALVH 197 (381)
T ss_pred HHHHHHHHHHHHHHHHHHhh
Confidence 34444544444444444444
No 259
>PF13301 DUF4079: Protein of unknown function (DUF4079)
Probab=20.50 E-value=5.1e+02 Score=26.08 Aligned_cols=48 Identities=19% Similarity=0.073 Sum_probs=30.9
Q ss_pred hHHHHHHHHHHHHHHHhcchhhhcccCCCCCccccccchhHHHHHHHHHHHH-HHHHHHHhh
Q 003558 503 GVTGIVMVVLMAIAFTLATPWFRRNKLNLPKPLKKLTGFNAFWYSHHLFVIV-YTLLIVHGQ 563 (811)
Q Consensus 503 ~~tGiv~~v~~~i~~~~s~~~~Rr~~~~~~~p~~~~~~ye~F~~~H~l~~i~-~vll~~H~~ 563 (811)
.++|+.++.+|++...++....+.+ -......|..+..+ ++++.+|+.
T Consensus 118 ~~~Gl~~~~L~~~s~al~~~i~~g~-------------~~~~R~lHi~lN~~~l~Lf~~q~i 166 (175)
T PF13301_consen 118 LWAGLAVVGLMAFSAALVPQIQKGN-------------RPWARRLHIYLNSLALLLFAWQAI 166 (175)
T ss_pred HHHHHHHHHHHHHHHHHHHHHccCC-------------chhHHHHHHHHHHHHHHHHHHHHH
Confidence 4689988888887655444333322 13677899987654 455677765
No 260
>PF13172 PepSY_TM_1: PepSY-associated TM helix
Probab=20.38 E-value=1.4e+02 Score=21.35 Aligned_cols=22 Identities=14% Similarity=0.105 Sum_probs=16.7
Q ss_pred hhhHHHHHHHHHHHHHHHHHHh
Q 003558 442 NLNFHKVIAVGISIGVGIHAIS 463 (811)
Q Consensus 442 ~~~fHk~ig~~~~~~~~lH~i~ 463 (811)
...+|+|+|..+.+..++=++.
T Consensus 5 ~~~~H~~~g~~~~~~ll~~~lT 26 (34)
T PF13172_consen 5 WRKIHRWLGLIAAIFLLLLALT 26 (34)
T ss_pred HHHHHHHHHHHHHHHHHHHHHH
Confidence 4479999999888877665543
Done!