Query 003559
Match_columns 811
No_of_seqs 294 out of 675
Neff 5.1
Searched_HMMs 46136
Date Fri Mar 29 01:44:07 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/003559.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/003559hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PLN02830 UDP-sugar pyrophospho 100.0 3E-122 7E-127 1059.3 53.6 574 123-800 14-613 (615)
2 PLN02435 probable UDP-N-acetyl 100.0 3.2E-91 6.9E-96 784.7 36.9 438 135-684 21-472 (493)
3 PTZ00339 UDP-N-acetylglucosami 100.0 8E-83 1.7E-87 718.0 36.5 450 140-684 2-463 (482)
4 cd06424 UGGPase UGGPase cataly 100.0 2.9E-82 6.4E-87 680.5 28.1 308 289-623 1-315 (315)
5 PLN02474 UTP--glucose-1-phosph 100.0 5.3E-79 1.1E-83 682.5 34.2 378 283-746 74-457 (469)
6 KOG2388 UDP-N-acetylglucosamin 100.0 2.7E-78 5.8E-83 665.7 22.9 425 135-665 2-436 (477)
7 PF01704 UDPGP: UTP--glucose-1 100.0 1.6E-74 3.5E-79 643.4 26.7 408 223-724 2-420 (420)
8 cd04193 UDPGlcNAc_PPase UDPGlc 100.0 1.3E-72 2.9E-77 610.7 26.6 315 277-623 2-323 (323)
9 cd00897 UGPase_euk Eukaryotic 100.0 2.4E-69 5.1E-74 578.5 24.8 284 286-623 1-288 (300)
10 KOG2638 UDP-glucose pyrophosph 100.0 5E-65 1.1E-69 548.2 31.6 450 162-746 26-483 (498)
11 COG4284 UDP-glucose pyrophosph 100.0 1.1E-61 2.4E-66 535.6 27.5 388 135-625 14-409 (472)
12 cd04180 UGPase_euk_like Eukary 100.0 3E-57 6.6E-62 479.4 25.6 235 289-548 1-241 (266)
13 COG1207 GlmU N-acetylglucosami 97.8 0.0027 5.9E-08 71.9 22.2 186 288-549 2-189 (460)
14 PRK05293 glgC glucose-1-phosph 97.6 0.0032 7E-08 70.1 18.8 196 287-548 2-205 (380)
15 PRK00844 glgC glucose-1-phosph 97.5 0.0074 1.6E-07 68.3 19.4 206 285-548 2-212 (407)
16 cd06915 NTP_transferase_WcbM_l 97.5 0.0068 1.5E-07 61.3 17.2 176 291-546 1-180 (223)
17 PRK14352 glmU bifunctional N-a 97.4 0.005 1.1E-07 71.1 17.9 186 288-548 4-191 (482)
18 cd02540 GT2_GlmU_N_bac N-termi 97.4 0.0089 1.9E-07 61.2 17.0 181 291-548 1-182 (229)
19 cd04197 eIF-2B_epsilon_N The N 97.4 0.0064 1.4E-07 62.6 16.0 124 291-465 3-129 (217)
20 PRK14356 glmU bifunctional N-a 97.3 0.0043 9.4E-08 70.7 16.0 184 288-548 5-189 (456)
21 cd04189 G1P_TT_long G1P_TT_lon 97.3 0.0099 2.2E-07 61.3 17.1 68 290-378 2-72 (236)
22 cd04181 NTP_transferase NTP_tr 97.3 0.012 2.5E-07 59.5 17.2 177 292-548 2-181 (217)
23 PRK02862 glgC glucose-1-phosph 97.3 0.011 2.4E-07 67.5 18.7 210 288-549 3-226 (429)
24 PRK05450 3-deoxy-manno-octulos 97.3 0.022 4.8E-07 59.2 19.5 188 288-548 2-194 (245)
25 PRK14360 glmU bifunctional N-a 97.3 0.0087 1.9E-07 68.0 17.5 185 289-548 2-186 (450)
26 TIGR02092 glgD glucose-1-phosp 97.3 0.004 8.8E-08 69.1 14.4 192 288-548 2-203 (369)
27 PRK14359 glmU bifunctional N-a 97.2 0.014 3E-07 65.9 18.4 178 289-548 3-180 (430)
28 cd02509 GDP-M1P_Guanylyltransf 97.2 0.0053 1.2E-07 66.0 14.2 195 291-549 3-208 (274)
29 PRK15480 glucose-1-phosphate t 97.2 0.02 4.3E-07 62.5 18.3 181 288-545 3-186 (292)
30 TIGR01207 rmlA glucose-1-phosp 97.2 0.013 2.9E-07 63.7 16.7 176 291-543 2-180 (286)
31 PRK14353 glmU bifunctional N-a 97.2 0.018 3.8E-07 65.6 18.2 184 288-548 5-189 (446)
32 PLN02241 glucose-1-phosphate a 97.1 0.019 4.1E-07 65.7 18.1 216 287-548 2-231 (436)
33 PRK14358 glmU bifunctional N-a 97.1 0.018 3.9E-07 66.8 17.9 178 287-541 6-184 (481)
34 TIGR01173 glmU UDP-N-acetylglu 97.0 0.011 2.4E-07 66.9 15.1 61 291-372 3-63 (451)
35 cd06426 NTP_transferase_like_2 97.0 0.027 5.8E-07 57.4 16.4 172 291-545 1-175 (220)
36 PRK14355 glmU bifunctional N-a 97.0 0.026 5.6E-07 64.7 18.1 185 288-548 3-188 (459)
37 cd02508 ADP_Glucose_PP ADP-glu 97.0 0.0089 1.9E-07 60.6 12.7 136 292-472 2-143 (200)
38 PRK00725 glgC glucose-1-phosph 97.0 0.035 7.7E-07 63.4 18.5 201 287-548 14-224 (425)
39 PF00483 NTP_transferase: Nucl 97.0 0.0042 9.2E-08 64.3 10.1 185 292-548 3-192 (248)
40 cd02538 G1P_TT_short G1P_TT_sh 96.9 0.025 5.4E-07 58.9 15.3 176 290-543 2-181 (240)
41 cd06422 NTP_transferase_like_1 96.9 0.043 9.3E-07 56.2 16.8 66 291-378 2-70 (221)
42 cd06425 M1P_guanylylT_B_like_N 96.8 0.056 1.2E-06 56.0 16.7 179 291-546 3-186 (233)
43 TIGR01208 rmlA_long glucose-1- 96.8 0.06 1.3E-06 59.5 17.6 176 291-544 2-180 (353)
44 cd02524 G1P_cytidylyltransfera 96.7 0.074 1.6E-06 56.0 17.3 189 291-544 1-197 (253)
45 cd02517 CMP-KDO-Synthetase CMP 96.7 0.14 3.1E-06 53.1 19.1 185 288-548 1-191 (239)
46 cd06428 M1P_guanylylT_A_like_N 96.7 0.089 1.9E-06 55.5 17.6 181 292-546 2-190 (257)
47 PRK14357 glmU bifunctional N-a 96.6 0.057 1.2E-06 61.5 16.6 176 291-548 3-179 (448)
48 TIGR02091 glgC glucose-1-phosp 96.6 0.062 1.3E-06 59.4 16.4 196 292-548 2-206 (361)
49 TIGR00454 conserved hypothetic 96.6 0.0032 6.9E-08 64.1 5.8 61 290-372 2-62 (183)
50 PRK13385 2-C-methyl-D-erythrit 96.6 0.0035 7.6E-08 65.2 5.8 65 289-372 3-67 (230)
51 TIGR02623 G1P_cyt_trans glucos 96.4 0.18 3.9E-06 53.5 17.6 193 291-547 2-198 (254)
52 PRK13368 3-deoxy-manno-octulos 96.4 0.23 4.9E-06 51.5 17.7 103 288-452 2-104 (238)
53 PRK09451 glmU bifunctional N-a 96.3 0.084 1.8E-06 60.5 15.4 179 288-548 5-185 (456)
54 COG2266 GTP:adenosylcobinamide 96.3 0.007 1.5E-07 61.5 5.7 61 290-373 2-62 (177)
55 TIGR01479 GMP_PMI mannose-1-ph 96.3 0.1 2.2E-06 60.7 15.9 195 291-549 3-210 (468)
56 PF01128 IspD: 2-C-methyl-D-er 96.3 0.0048 1E-07 64.9 4.8 65 289-372 1-65 (221)
57 PLN02728 2-C-methyl-D-erythrit 96.2 0.0069 1.5E-07 64.8 5.9 42 288-336 24-65 (252)
58 cd04198 eIF-2B_gamma_N The N-t 96.2 0.066 1.4E-06 55.2 12.5 130 291-474 3-135 (214)
59 COG0746 MobA Molybdopterin-gua 96.1 0.012 2.6E-07 60.6 6.7 100 288-453 4-103 (192)
60 cd04182 GT_2_like_f GT_2_like_ 96.1 0.0078 1.7E-07 59.1 5.1 38 289-335 1-38 (186)
61 PRK00560 molybdopterin-guanine 96.0 0.0073 1.6E-07 61.7 4.5 39 288-335 8-47 (196)
62 PRK14354 glmU bifunctional N-a 96.0 0.23 5.1E-06 56.6 17.1 182 289-548 3-185 (458)
63 TIGR01105 galF UTP-glucose-1-p 95.9 0.018 3.8E-07 63.1 7.4 64 288-372 3-69 (297)
64 cd02523 PC_cytidylyltransferas 95.9 0.15 3.3E-06 52.4 13.8 60 292-372 2-64 (229)
65 COG1213 Predicted sugar nucleo 95.8 0.016 3.5E-07 61.4 6.0 66 290-375 5-70 (239)
66 cd02513 CMP-NeuAc_Synthase CMP 95.8 0.2 4.3E-06 51.1 13.8 39 288-336 1-39 (223)
67 TIGR03310 matur_ygfJ molybdenu 95.6 0.013 2.7E-07 58.2 4.3 48 291-358 2-49 (188)
68 PRK10122 GalU regulator GalF; 95.6 0.034 7.3E-07 60.8 8.0 63 288-371 3-68 (297)
69 TIGR02665 molyb_mobA molybdopt 95.4 0.013 2.9E-07 58.2 3.7 38 289-334 1-38 (186)
70 PF12804 NTP_transf_3: MobA-li 95.4 0.0098 2.1E-07 57.6 2.7 48 291-358 1-48 (160)
71 PLN02917 CMP-KDO synthetase 95.4 0.48 1E-05 51.9 16.0 187 288-548 47-237 (293)
72 cd02503 MobA MobA catalyzes th 95.3 0.014 2.9E-07 57.9 3.4 48 290-358 2-49 (181)
73 TIGR00453 ispD 2-C-methyl-D-er 95.2 0.015 3.3E-07 59.4 3.4 38 291-335 2-39 (217)
74 cd02516 CDP-ME_synthetase CDP- 95.1 0.017 3.6E-07 58.9 3.5 41 289-336 1-41 (218)
75 PRK14490 putative bifunctional 95.1 0.036 7.8E-07 62.3 6.2 40 287-335 173-212 (369)
76 PRK00155 ispD 2-C-methyl-D-ery 95.1 0.021 4.5E-07 59.1 3.9 41 288-335 3-43 (227)
77 TIGR03202 pucB xanthine dehydr 95.0 0.02 4.4E-07 57.5 3.7 37 290-335 2-38 (190)
78 PRK02726 molybdopterin-guanine 95.0 0.022 4.7E-07 58.4 3.9 39 288-335 7-45 (200)
79 PRK00317 mobA molybdopterin-gu 95.0 0.022 4.8E-07 57.3 3.9 39 288-334 3-41 (193)
80 TIGR01099 galU UTP-glucose-1-p 94.8 0.046 9.9E-07 57.5 5.8 61 291-372 3-66 (260)
81 COG1209 RfbA dTDP-glucose pyro 94.6 0.68 1.5E-05 50.5 14.0 158 292-513 4-165 (286)
82 PRK14489 putative bifunctional 94.5 0.04 8.7E-07 61.9 4.6 40 287-334 4-43 (366)
83 COG1208 GCD1 Nucleoside-diphos 93.9 0.16 3.5E-06 57.1 8.0 178 290-544 3-184 (358)
84 PRK14500 putative bifunctional 93.9 0.05 1.1E-06 61.0 3.9 39 288-335 160-198 (346)
85 cd02541 UGPase_prokaryotic Pro 93.9 0.09 1.9E-06 55.6 5.6 61 291-372 3-66 (267)
86 COG1211 IspD 4-diphosphocytidy 93.7 0.12 2.5E-06 55.1 5.8 65 288-371 4-68 (230)
87 PRK09382 ispDF bifunctional 2- 93.6 0.064 1.4E-06 60.8 4.0 43 287-336 4-46 (378)
88 COG0448 GlgC ADP-glucose pyrop 93.3 0.91 2E-05 51.7 12.3 200 287-549 4-210 (393)
89 cd04183 GT2_BcE_like GT2_BcbE_ 93.0 0.066 1.4E-06 55.1 2.8 38 291-335 1-41 (231)
90 TIGR00466 kdsB 3-deoxy-D-manno 92.5 0.44 9.6E-06 50.3 8.2 88 291-395 2-102 (238)
91 cd02507 eIF-2B_gamma_N_like Th 92.5 0.23 4.9E-06 51.4 5.9 63 291-374 3-68 (216)
92 PRK13389 UTP--glucose-1-phosph 90.8 0.41 8.9E-06 52.6 5.9 62 290-372 10-74 (302)
93 PRK15460 cpsB mannose-1-phosph 90.3 0.45 9.8E-06 55.7 6.0 203 289-549 6-219 (478)
94 cd02518 GT2_SpsF SpsF is a gly 88.8 0.85 1.8E-05 47.3 6.1 60 291-372 2-62 (233)
95 COG0836 {ManC} Mannose-1-phosp 85.4 1.2 2.5E-05 49.7 5.0 201 290-549 3-212 (333)
96 KOG1322 GDP-mannose pyrophosph 84.0 29 0.00063 39.2 14.8 187 287-548 8-199 (371)
97 TIGR03584 PseF pseudaminic aci 79.4 77 0.0017 33.3 15.6 183 291-545 2-185 (222)
98 COG4750 LicC CTP:phosphocholin 75.6 2 4.4E-05 44.9 2.6 60 291-372 3-65 (231)
99 COG1210 GalU UDP-glucose pyrop 73.5 4.8 0.0001 44.2 4.8 62 291-370 7-68 (291)
100 COG2068 Uncharacterized MobA-r 72.9 4.2 9.1E-05 42.6 4.1 39 288-335 5-43 (199)
101 PF14134 DUF4301: Domain of un 44.2 22 0.00047 42.1 3.6 60 382-451 235-297 (513)
102 PF10162 G8: G8 domain; Inter 35.2 1.7E+02 0.0037 28.1 7.8 68 702-797 16-85 (125)
103 COG1861 SpsF Spore coat polysa 33.4 62 0.0013 34.9 4.7 67 288-375 3-69 (241)
104 smart00613 PAW domain present 24.0 2E+02 0.0043 26.6 5.7 52 741-799 22-87 (89)
105 PLN03014 carbonic anhydrase 21.7 1.2E+02 0.0026 34.6 4.6 14 80-93 83-96 (347)
106 KOG1460 GDP-mannose pyrophosph 20.7 8.7E+02 0.019 27.7 10.6 165 289-513 4-173 (407)
No 1
>PLN02830 UDP-sugar pyrophosphorylase
Probab=100.00 E-value=3.4e-122 Score=1059.32 Aligned_cols=574 Identities=24% Similarity=0.328 Sum_probs=512.7
Q ss_pred chhHHhhccCCccHHHHHHHHHHcCCccccccCccchhhhhhhhhHHHHHHHHHhhhhccccCCCcccccccc--chhhH
Q 003559 123 NYFARVLASLNLDQLFLIKCVIAAGQEHVLNLEPEYVESEARSDIKSALYALVEFIDRLDVNGRNSEAKDAVL--EIEQV 200 (811)
Q Consensus 123 ~~~~~~~~~l~~~~~~l~~~L~~~gQeHll~~~~~w~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L--~~~~~ 200 (811)
++|+++++.|++++++|+++|.++||+|||++|++ | +++
T Consensus 14 ~~~~~~~~~~~~~~~~l~~~L~~~gQ~HL~~~w~~-------------------------------------l~~~~~-- 54 (615)
T PLN02830 14 PSLHSNLALLSPDQRALVRRLLELGQSHLFEHWPE-------------------------------------PGVDDD-- 54 (615)
T ss_pred cccccccccCChhHHHHHHHHHHcCcHHHHhhhhc-------------------------------------cCCCHH--
Confidence 68999999999999999999999999999999554 4 454
Q ss_pred HHHHHHHHHHHHHhccccCcchhHHHHHHHHHHHHccccccccccccccccccccccccc-c-CCCCcccCCChHHHHHH
Q 003559 201 KDLNKLLKTLAEIEQFYDCVGGIIGYQVEVLELLAQSKFERKTTKSQHVHESMECQFLEI-H-VPSGLDLSQNTEYAAQA 278 (811)
Q Consensus 201 ~~~~~Ll~qL~~ld~~y~~~ggl~~y~~~a~~ll~~s~~~~~~~~~~~~~~~~~~~~~~~-~-vP~g~~l~~~~~~~~~~ 278 (811)
+|++|++||..+|..|| ||+.+|+.++.+++.++.. +. .+++++ | +|.+..++++++....|
T Consensus 55 -e~~~L~~qL~~ld~~y~--g~l~~~~~~~~~~l~~s~~--~~-----------~~~~~i~P~vp~~~~~~~~~~~~~~~ 118 (615)
T PLN02830 55 -DKRRLLEQVARLDESYP--GGLAAYVSNAKELLADSKE--GV-----------NPFEGWTPSVPEGEVLEYGSEEFVEL 118 (615)
T ss_pred -HHHHHHHHHHhcccccc--chHHHHHHHHHHHHhhccc--CC-----------CchhhcccCCCccccccccchhhhHH
Confidence 89999999999999995 9999999999999986521 11 133443 4 68888777766666778
Q ss_pred HHHhhhccCcEEEEEecCCccccCCCCCCCCCceeeccccCCCCCcchHHHHHHHHHHHHHhHhhcC-CcccceEEEecC
Q 003559 279 ALWGIEGLPELGEIYPLGGSADRLGLVDHETGECLPAAMLPYCGRTLLEGLIRDLQAREFLYFKLYG-KQCITPVAIMTS 357 (811)
Q Consensus 279 e~~Gle~l~kvavVlLAGGlGTRLG~~~pKgg~~lpV~l~p~sgkTlLql~~e~I~~lq~La~~~~g-~~~~IPl~IMTS 357 (811)
+++|+++|+|+|||+||||||||||+++||+ +|||+++ +|+||||++++||+++|+||.++.+ ..+.||||||||
T Consensus 119 ~~~Gl~~l~kvavllLaGGlGTRLG~~~pK~--~lpv~~~--~gkt~lql~~e~I~~lq~la~~~~~~~~~~IPl~IMTS 194 (615)
T PLN02830 119 EEAGLREAGNAAFVLVAGGLGERLGYSGIKV--ALPTETA--TGTCYLQLYIESILALQERAKKRKAKKGRKIPLVIMTS 194 (615)
T ss_pred HHHHHHHhCcEEEEEecCCcccccCCCCCCc--ceecccC--CCCcHHHHHHHHHHHHHHHHHHhcccCCCCceEEEECC
Confidence 8999999999999999999999999999999 9999976 9999999999999999999977554 558999999999
Q ss_pred CCCCchHHHHHHHHHhCCCCCCCCceEEEecCCeeeEecCCCcccccC--CCCccccCCCCcHHHHHHHhcCchHHHHHc
Q 003559 358 SAKNNHERITSLCERLRWFGRGQSSFQLFEQPLVPAVDAEDGQWLVMR--PFAPVCKPGGHGAIWKLAHDKGIFKWFHDN 435 (811)
Q Consensus 358 ~~~~Th~~T~~fle~n~yFGl~~~qV~~F~Q~~vP~l~~~dgki~l~~--~~~l~~~P~GhGdIy~aL~~sGlLd~l~~~ 435 (811)
+ +||++|++||++|+|||++++||+||+|+++||+++++|++++++ +++++|+||||||||+||+++|+||+|+++
T Consensus 195 ~--~T~~~T~~~~~~n~~FGl~~~~v~~F~Q~~~P~~~~~~g~~~l~~~d~~~i~~~P~GhGdi~~aL~~sGlLd~l~~~ 272 (615)
T PLN02830 195 D--DTHARTLKLLERNDYFGMDPDQVTLLKQEKVACLMDNDARLALDPNDPYKIQTKPHGHGDVHALLYSSGLLDKWLSA 272 (615)
T ss_pred c--chhHHHHHHHHHCCccCCCccceEEEEcCcceeEecCCCcccccCCCCCccccCCCCccHHHHHHHHCCCHHHHHHc
Confidence 9 899999999999999999999999999999999998889999987 889999999999999999999999999999
Q ss_pred CceEEEEEeCCCCcccc-cHhHHHHhhhhhhcCCceeEEEeeecCCCCcCceEEEEEecCCCccccceEEEEecccCccc
Q 003559 436 GRKGATVRQVSNVVAAT-DLTLLALAGIGLHHGKKLGFASCKRSSGATEGINVLIEKKNLDGKWAYGLSCIEYTEFDKFG 514 (811)
Q Consensus 436 Gikyi~v~~vDN~La~v-DP~~l~flG~~~~~~~~~~~~~vvRK~~~~e~vGvL~~~r~~dGk~~~~~~vVEYsEl~~~~ 514 (811)
|+||+|||||||+|+++ ||.| +|+|+.++++|++++|.| .+.|++|++|+.++.||++ +++||||+|++++.
T Consensus 273 G~~yi~v~~vDN~L~~~Adp~f---lG~~~~~~~d~~~kvv~K--~~~E~vGvi~~~~~~dG~~--l~~vVEYse~~~ll 345 (615)
T PLN02830 273 GKKWVVFFQDTNGLVFKAIPAA---LGVSATKGFDMNSLAVPR--KAKEAIGAIAKLTHKDGRE--MVINVEYNQLDPLL 345 (615)
T ss_pred CCEEEEEEeccchhhhcccHHH---hHHHHhcCCceEEEEEEC--CCCcccceEEEEecCCCCe--eeEEEeecccCHHH
Confidence 99999999999999998 9855 899999999999998655 4689999999866788874 46899999999883
Q ss_pred ----CCCCCCCCCCcccccccceeeeeEeHHHHHhhhcccccCCccccccccCCCcceecCCCCccccCccccccchhhh
Q 003559 515 ----ITRGPFSSNGLQADFPANTNILYVDLASAELVGSSENERSLPGMVLNTKKPIVYMDNFGDTHSVPGGRLECTMQNI 590 (811)
Q Consensus 515 ----~~~~~~~dg~l~s~f~~Ninn~~fsL~~L~~vl~~~~~~~Lp~hvan~KKkIpy~D~~g~~~~~~p~rLE~~Mqd~ 590 (811)
.++++..+++++|.|||||||+|++|+.|++++++ +.+.||++| ||| |+|.++ +.++.++||||||||+
T Consensus 346 ~~a~~p~g~l~~~~~~s~FPgNtN~L~v~L~a~~~~l~~-~~~~lp~iv-NpK----~~d~~~-~v~q~~trle~~mq~f 418 (615)
T PLN02830 346 RATGHPDGDVNDETGYSPFPGNINQLILKLGPYVKELAK-TGGVIEEFV-NPK----YKDATK-TAFKSPTRLECMMQDY 418 (615)
T ss_pred HhccCCCcccccccccccCCCCceeeEeeHHHHHHHHHh-CCCccceec-cCc----ccCCCC-ceeecchHHHHHHHHH
Confidence 34566677888999999999999999999999986 789999865 987 888764 5788999999999999
Q ss_pred hhhhccccccccccceeeecccceeeeeccCCCchhhhhccccCCCCCCChhhhHHHHHHHHHHHHHHCCcccCccc---
Q 003559 591 ADNFLNTYSSRCYKGVEDDLDTFMVYNERRRVTSSAKKKRKRADMSLHQTPDGSFLDILRNAYDILCQCHIKLPEIE--- 667 (811)
Q Consensus 591 ~~~F~~~y~~~~~k~~f~~~~R~~~FsPvKn~~~sa~k~~~~~~~~~~~sp~ta~~dl~~~~~~~L~~aG~~vp~~~--- 667 (811)
++.|. ...++||+++++|.+|+||||++.++++|...+ ++ .+||+++++|+|++++++|..+|+.+.++.
T Consensus 419 ~~~~~-----~~~~vg~~v~~~~~~f~PVKn~~s~a~~k~~~~-~~-~~~~~s~e~d~y~~~~llL~~s~~~~~~~~~~~ 491 (615)
T PLN02830 419 PKTLP-----PSAKVGFTVFDNWLAYSPVKNSPADGAAKVPEG-NP-THSATSGEMAIYGANCLILRKAGADVEEPVEDV 491 (615)
T ss_pred hhhcC-----cccccCceecCchheeccccCChHHhhhhcccC-CC-ccCcchhhHHHHHHHHHHHHhcCCccccCcccc
Confidence 99985 356799999999999999999989998888765 44 559999999999999999999888776443
Q ss_pred -CCCcccccCCCeeEEeCCCccccHHHHhhcc-CC-CCCCCCcEEEEEeceEEeeceEEEEEEEEEeccCCCCccccCCC
Q 003559 668 -GNDKYIDDGPPYLILLHPALGLLWEVTRQKF-KG-GSVSKGSELQIEVAEFLWRNVQLDGSLIIVAENVMGSTRIADNG 744 (811)
Q Consensus 668 -~~~~~~~~~P~~~I~L~P~~~~~~~~~~~k~-~~-gsi~~~S~L~VeG~~~f~~~v~ldGslvI~a~~~~g~~~~~~~g 744 (811)
.++.++..+|+ |.|+|+|+++|+++++|| ++ ++|+++|+|+|+|+++||+||+|||+|+|.|+. |+
T Consensus 492 ~~~~~~~~~~P~--I~L~p~f~~~~~~~~~k~~~~~~si~~~s~L~v~G~~~~~~~v~LdG~viI~a~~--~~------- 560 (615)
T PLN02830 492 VFNGIEVEVGPR--IVLKPAFALTFSELKKKVAPGSVKISQRSTLVLEGADIVIENLSLDGALVVRAVP--GA------- 560 (615)
T ss_pred ccCCcccCCCCe--EEECchhhhHHHHHHHHhcCCCCcccCCCeEEEEeeeEEecCeEEEEEEEEEcCC--CC-------
Confidence 56888888996 999999999999999999 76 699999999999999999999999999999883 33
Q ss_pred cceeecccccceEEEeeeEEeeCceeeecCCC--------ceecceeeEEEEEEEEeecCceeE
Q 003559 745 ESILQYGYRCGRCKLNNVKVLNKGIDWDCGDN--------TYWKHDVQWFEALKVILHGNAEFE 800 (811)
Q Consensus 745 ~~i~~~~~~~g~~~l~~~~V~N~G~~~~~~~~--------~~~~~~v~r~e~~~i~~~~~~ef~ 800 (811)
+|+|+|++|+|+||+|++++. .||||+++|+|++++++..+|+|.
T Consensus 561 -----------~~~i~g~~v~N~g~~~~~~~~~~~~~~~~~irg~~~~~~e~~~~~~~~~g~~~ 613 (615)
T PLN02830 561 -----------EVTVGGLRVKNKGWTWEPVDKGTSAPEEIRIRGFVIKKVETAELVFDKPGKYT 613 (615)
T ss_pred -----------eEEecCeEEecCCcEEEecCCCCCcchhhhhcceeEeeeeeEEEEecCCCcee
Confidence 688999999999999999633 499999999999999999999985
No 2
>PLN02435 probable UDP-N-acetylglucosamine pyrophosphorylase
Probab=100.00 E-value=3.2e-91 Score=784.67 Aligned_cols=438 Identities=19% Similarity=0.222 Sum_probs=367.5
Q ss_pred cHHHHHHHHHHcCCccccccCccchhhhhhhhhHHHHHHHHHhhhhccccCCCccccccccchhhHHHHHHHHHHHHHHh
Q 003559 135 DQLFLIKCVIAAGQEHVLNLEPEYVESEARSDIKSALYALVEFIDRLDVNGRNSEAKDAVLEIEQVKDLNKLLKTLAEIE 214 (811)
Q Consensus 135 ~~~~l~~~L~~~gQeHll~~~~~w~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~~~~~~~~~Ll~qL~~ld 214 (811)
+...|+++|.++||+|||++|++ |+++ +|++|++||..+|
T Consensus 21 ~~~~l~~~l~~~gQ~HLl~~w~~-------------------------------------ls~~---e~~~L~~qL~~iD 60 (493)
T PLN02435 21 PPQALLERLKDYGQEDAFALWDE-------------------------------------LSPE---ERDLLVRDIESLD 60 (493)
T ss_pred cHHHHHHHHHHcChHHHHHhhhh-------------------------------------CCHH---HHHHHHHHHHhcC
Confidence 56689999999999999999555 8777 8999999999999
Q ss_pred ccccCcchhHHHHHHHHHHHHccccccccccccccccccccccccc-cCCCCcccCC---ChHHHHHHHHHhhhcc--Cc
Q 003559 215 QFYDCVGGIIGYQVEVLELLAQSKFERKTTKSQHVHESMECQFLEI-HVPSGLDLSQ---NTEYAAQAALWGIEGL--PE 288 (811)
Q Consensus 215 ~~y~~~ggl~~y~~~a~~ll~~s~~~~~~~~~~~~~~~~~~~~~~~-~vP~g~~l~~---~~~~~~~~e~~Gle~l--~k 288 (811)
..| |. ..+++++..+ +. +.+.+ |+|++...+. ..+....|++.|+++| +|
T Consensus 61 ~~~-----l~---~~~~~~~~~~----~~------------~~~~i~P~p~~~~~~~~~~~~~~~~~~~~~Gl~~I~~gk 116 (493)
T PLN02435 61 LPR-----ID---RIIRCSLRSQ----GL------------PVPAIEPVPENSVSTVEERTPEDRERWWKMGLKAISEGK 116 (493)
T ss_pred HHH-----HH---HHHHHHhhcc----CC------------chhccCCCChhhccchhccChHHHHHHHHHHHHHHhcCC
Confidence 844 22 3344444311 11 11122 5666543333 2245567889999999 59
Q ss_pred EEEEEecCCccccCCCCCCCCCceeeccccCCCCCcchHHHHHHHHHHHHHhHhhcC----CcccceEEEecCCCCCchH
Q 003559 289 LGEIYPLGGSADRLGLVDHETGECLPAAMLPYCGRTLLEGLIRDLQAREFLYFKLYG----KQCITPVAIMTSSAKNNHE 364 (811)
Q Consensus 289 vavVlLAGGlGTRLG~~~pKgg~~lpV~l~p~sgkTlLql~~e~I~~lq~La~~~~g----~~~~IPl~IMTS~~~~Th~ 364 (811)
||||+||||||||||+++||| ||||++| ++|||||+++|||+++|++|.+++| ..+.||||||||+ .||+
T Consensus 117 vavvlLAGGqGTRLG~~~PKg--~~~Iglp--s~kslfql~~e~I~~lq~la~~~~~~~~~~~~~IPl~IMTS~--~T~~ 190 (493)
T PLN02435 117 LAVVLLSGGQGTRLGSSDPKG--CFNIGLP--SGKSLFQLQAERILCVQRLAAQASSEGPGRPVTIHWYIMTSP--FTDE 190 (493)
T ss_pred EEEEEeCCCcccccCCCCCcc--ceecCCC--CCCcHHHHHHHHHHHHHHHHHhhcccccCCCCceeEEEeCCc--chhH
Confidence 999999999999999999999 9999988 9999999999999999999977654 4588999999999 7999
Q ss_pred HHHHHHHHhCCCCCCCCceEEEecCCeeeEecCCCcccccCCCCccccCCCCcHHHHHHHhcCchHHHHHcCceEEEEEe
Q 003559 365 RITSLCERLRWFGRGQSSFQLFEQPLVPAVDAEDGQWLVMRPFAPVCKPGGHGAIWKLAHDKGIFKWFHDNGRKGATVRQ 444 (811)
Q Consensus 365 ~T~~fle~n~yFGl~~~qV~~F~Q~~vP~l~~~dgki~l~~~~~l~~~P~GhGdIy~aL~~sGlLd~l~~~Gikyi~v~~ 444 (811)
+|++||++|+|||++++||+||+|+++||++ .||+++++++++++|+|+||||||.||+++|+||+|+++|++|+||||
T Consensus 191 ~T~~ff~~~~~FGl~~~~V~fF~Q~~~P~~~-~dg~i~l~~~~~i~~~P~GnGgiy~aL~~sG~Ld~l~~~Gi~yi~v~~ 269 (493)
T PLN02435 191 ATRKFFESHKYFGLEADQVTFFQQGTLPCVS-KDGKFIMETPFKVAKAPDGNGGVYAALKSSRLLEDMASRGIKYVDCYG 269 (493)
T ss_pred HHHHHHHhCCCCCCCccceEEEecCCcceEC-CCCCcccCCCcccccCCCCCcHHHHHHHHCCcHHHHHhcCCEEEEEEe
Confidence 9999999999999999999999999999998 799999999999999999999999999999999999999999999999
Q ss_pred CCCCcccc-cHhHHHHhhhhhhcCCceeEEEeeecCCCCcCceEEEEEecCCCccccceEEEEecccCcccCCCCCCC-C
Q 003559 445 VSNVVAAT-DLTLLALAGIGLHHGKKLGFASCKRSSGATEGINVLIEKKNLDGKWAYGLSCIEYTEFDKFGITRGPFS-S 522 (811)
Q Consensus 445 vDN~La~v-DP~~l~flG~~~~~~~~~~~~~vvRK~~~~e~vGvL~~~r~~dGk~~~~~~vVEYsEl~~~~~~~~~~~-d 522 (811)
|||+|+++ ||.| +|+++.++.+|+++| +||+.++|+||++|+ +..||+ ++||||+|++++. ++.+++ +
T Consensus 270 vDN~L~~~~DP~f---lG~~~~~~~d~~~kV-v~K~~~~EkvG~i~~-~~~~g~----~~vvEYsEl~~~~-~~~~~~~~ 339 (493)
T PLN02435 270 VDNALVRVADPTF---LGYFIDKGVASAAKV-VRKAYPQEKVGVFVR-RGKGGP----LTVVEYSELDQAM-ASAINQQT 339 (493)
T ss_pred cccccccccCHHH---HHHHHhcCCceEEEe-eecCCCCCceeEEEE-ecCCCC----EEEEEeccCCHHH-HhccCccc
Confidence 99999987 9966 899999999999995 889999999999997 336888 8999999999986 444443 4
Q ss_pred CCccccccc-ceeeeeEeHHHHHhhhcccccCCccccccccCCCcceecCCCCccccCccccccchhhhhhhhccccccc
Q 003559 523 NGLQADFPA-NTNILYVDLASAELVGSSENERSLPGMVLNTKKPIVYMDNFGDTHSVPGGRLECTMQNIADNFLNTYSSR 601 (811)
Q Consensus 523 g~l~s~f~~-Ninn~~fsL~~L~~vl~~~~~~~Lp~hvan~KKkIpy~D~~g~~~~~~p~rLE~~Mqd~~~~F~~~y~~~ 601 (811)
|.+. |++ |||||||+++||+++.+. .+..||+|+|+ |||||+|.. ++++|||.|++ |+|+ -
T Consensus 340 g~L~--~~~gnI~~h~fs~~fL~~~~~~-~~~~l~~H~A~--Kkip~~~~~-----~ngiK~E~FiF---Dvf~-----~ 401 (493)
T PLN02435 340 GRLR--YCWSNVCLHMFTLDFLNQVANG-LEKDSIYHLAE--KKIPSIHGY-----TMGLKLEQFIF---DAFP-----Y 401 (493)
T ss_pred cccc--cchhhHHHhhccHHHHHHHHHh-hhhcCCceeec--cccCccCCC-----cceEEeeeeee---cchh-----h
Confidence 8876 997 999999999999999764 45579999999 999999932 37899997765 5554 2
Q ss_pred cccceeeecccceeeeeccCCCchhhhhccccCCCCCCChhhhHHHHHHHHHHHHHHCCcccCccc-CCCcccccCCCee
Q 003559 602 CYKGVEDDLDTFMVYNERRRVTSSAKKKRKRADMSLHQTPDGSFLDILRNAYDILCQCHIKLPEIE-GNDKYIDDGPPYL 680 (811)
Q Consensus 602 ~~k~~f~~~~R~~~FsPvKn~~~sa~k~~~~~~~~~~~sp~ta~~dl~~~~~~~L~~aG~~vp~~~-~~~~~~~~~P~~~ 680 (811)
+.++++.+++|..+|+|+||++++. .|||+||+.+++++|++||+++|+.+.... .....+++.|.
T Consensus 402 a~~~~~~eV~R~~EFaPlKN~~g~~-----------~Dsp~tar~~l~~~~~~wl~~aG~~~~~~~~~~~~~vEisP~-- 468 (493)
T PLN02435 402 APSTALFEVLREEEFAPVKNANGSN-----------FDTPESARLLVLRLHTRWVVAAGGFLTHSVPLYATGVEVSPL-- 468 (493)
T ss_pred cCceEEEEEchhhccCcccCCCCCC-----------CCCHHHHHHHHHHHHHHHHHHcCCEecCCccccCCcEEeCCc--
Confidence 3467789999999999999988753 369999999999999999999999774211 11234566674
Q ss_pred EEeC
Q 003559 681 ILLH 684 (811)
Q Consensus 681 I~L~ 684 (811)
+.++
T Consensus 469 ~sY~ 472 (493)
T PLN02435 469 CSYA 472 (493)
T ss_pred eeeC
Confidence 5554
No 3
>PTZ00339 UDP-N-acetylglucosamine pyrophosphorylase; Provisional
Probab=100.00 E-value=8e-83 Score=718.03 Aligned_cols=450 Identities=17% Similarity=0.162 Sum_probs=362.9
Q ss_pred HHHHHHcCCccccccCccchhhhhhhhhHHHHHHHHHhhhhccccCCCccccccccchhhHHHHHHHHHHH-HHHhcccc
Q 003559 140 IKCVIAAGQEHVLNLEPEYVESEARSDIKSALYALVEFIDRLDVNGRNSEAKDAVLEIEQVKDLNKLLKTL-AEIEQFYD 218 (811)
Q Consensus 140 ~~~L~~~gQeHll~~~~~w~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~~~~~~~~~Ll~qL-~~ld~~y~ 218 (811)
+++|.++||+|||++|++ |+++ +|..|++|| +.+....
T Consensus 2 ~~~l~~~gQ~hl~~~~~~-------------------------------------l~~~---e~~~l~~ql~~~~~~~d- 40 (482)
T PTZ00339 2 LKVLTGDGQDHLREALKR-------------------------------------RSEG---EFTPLATQILSSLTNVD- 40 (482)
T ss_pred hhhhhhcCHHHHHHHHHh-------------------------------------CCHH---HHHHHHHHHHHHhhccC-
Confidence 568999999999999555 8887 999999999 7443321
Q ss_pred CcchhHHHHHHHHHHHHccccccccccccccccccccccccccCCCCcccC--CChHHHHHHHHHhhhccC--cEEEEEe
Q 003559 219 CVGGIIGYQVEVLELLAQSKFERKTTKSQHVHESMECQFLEIHVPSGLDLS--QNTEYAAQAALWGIEGLP--ELGEIYP 294 (811)
Q Consensus 219 ~~ggl~~y~~~a~~ll~~s~~~~~~~~~~~~~~~~~~~~~~~~vP~g~~l~--~~~~~~~~~e~~Gle~l~--kvavVlL 294 (811)
+.-+...++.+......+....+..+ +.++ +.+ .|+|.....+ ..++...+|+++|+++|+ |+|+|+|
T Consensus 41 -~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~---~~~--~p~~~~~~~~~~~~~~~~~~~~~~Gl~~i~~gkvavViL 112 (482)
T PTZ00339 41 -FKHRNAVLEPKLEEYNAEAPVGIDID--SIHN---CNI--EPPNNNTFIDIYEKEKERKELKESGLEIIKKGEVAVLIL 112 (482)
T ss_pred -HHHHHHHHHHHhhhhhcccccccccc--cccc---ccc--CCCCcccccccccCHHHHHHHHHhHHHHHhcCCeEEEEE
Confidence 25666777776654433210000000 0000 111 2555533222 235667889999999998 6999999
Q ss_pred cCCccccCCCCCCCCCceeeccccCCCCCcchHHHHHHHHHHHHHhHhhcC--CcccceEEEecCCCCCchHHHHHHHHH
Q 003559 295 LGGSADRLGLVDHETGECLPAAMLPYCGRTLLEGLIRDLQAREFLYFKLYG--KQCITPVAIMTSSAKNNHERITSLCER 372 (811)
Q Consensus 295 AGGlGTRLG~~~pKgg~~lpV~l~p~sgkTlLql~~e~I~~lq~La~~~~g--~~~~IPl~IMTS~~~~Th~~T~~fle~ 372 (811)
|||+|||||++.||+ |+||+++ +|+||||++++||++++.++.+++| ..+.||||||||+ .||+.|++||++
T Consensus 113 AGG~GTRLg~~~PK~--ll~I~~~--~gksL~q~~~erI~~l~~~~~~~~~~~~~~~Ip~~IMTS~--~t~~~t~~~f~~ 186 (482)
T PTZ00339 113 AGGLGTRLGSDKPKG--LLECTPV--KKKTLFQFHCEKVRRLEEMAVAVSGGGDDPTIYILVLTSS--FNHDQTRQFLEE 186 (482)
T ss_pred CCCCcCcCCCCCCCe--EeeecCC--CCccHHHHHHHHHHHHhhhhhcccccccCCCCCEEEEeCc--chHHHHHHHHHh
Confidence 999999999999999 9999966 9999999999999999998876665 3468999999999 799999999999
Q ss_pred hCCCCCCCCceEEEecCCeeeEecCCCcccccCCCCccccCCCCcHHHHHHHhcCchHHHHHcCceEEEEEeCCCCcccc
Q 003559 373 LRWFGRGQSSFQLFEQPLVPAVDAEDGQWLVMRPFAPVCKPGGHGAIWKLAHDKGIFKWFHDNGRKGATVRQVSNVVAAT 452 (811)
Q Consensus 373 n~yFGl~~~qV~~F~Q~~vP~l~~~dgki~l~~~~~l~~~P~GhGdIy~aL~~sGlLd~l~~~Gikyi~v~~vDN~La~v 452 (811)
|+|||++++||+||+|+++||++.++|+++++++++++|+|+||||||.||+++|+|++|+++|+||+|||||||+|+++
T Consensus 187 ~~~FGl~~~~V~~F~Q~~~P~i~~~~g~ill~~~~~i~~~P~GnGgiy~aL~~sG~Ld~l~~~Gi~yi~v~~vDN~L~k~ 266 (482)
T PTZ00339 187 NNFFGLDKEQVIFFKQSSLPCYDENTGRFIMSSQGSLCTAPGGNGDVFKALAKCSELMDIVRKGIKYVQVISIDNILAKV 266 (482)
T ss_pred ccccCCCcccEEEEecCCcceEecCCCCcccCCCCceeeCCCCCcHHHHHHHHCCcHHHHHHcCCEEEEEEecCcccccc
Confidence 99999999999999999999999778999999999999999999999999999999999999999999999999999998
Q ss_pred -cHhHHHHhhhhhhcCC-ceeEEEeeecCCCCcCceEEEEEecCCCccccceEEEEecccCcccCCCCCCC-CCCccccc
Q 003559 453 -DLTLLALAGIGLHHGK-KLGFASCKRSSGATEGINVLIEKKNLDGKWAYGLSCIEYTEFDKFGITRGPFS-SNGLQADF 529 (811)
Q Consensus 453 -DP~~l~flG~~~~~~~-~~~~~~vvRK~~~~e~vGvL~~~r~~dGk~~~~~~vVEYsEl~~~~~~~~~~~-dg~l~s~f 529 (811)
||.| +|+++..++ ++..++ + |+.++|+||++|+ .||+ +++|||+|++++. ++.+.. +|.+ .|
T Consensus 267 ~DP~f---lG~~~~~~~~~~~~kv-v-k~~~~EkvG~~~~---~~g~----~~vvEYsEi~~~~-~~~~~~~~g~l--~f 331 (482)
T PTZ00339 267 LDPEF---IGLASSFPAHDVLNKC-V-KREDDESVGVFCL---KDYE----WQVVEYTEINERI-LNNDELLTGEL--AF 331 (482)
T ss_pred cCHHH---hHHHHHCCchhheeee-e-cCCCCCceeEEEE---eCCc----ccEEEEeccChhh-hhcccccCCee--cc
Confidence 9966 899999999 888876 5 5678999999998 6888 8999999999985 443333 3544 58
Q ss_pred cc-ceeeeeEeHHHHHhhhcccccCCccccccccCCCcceecCCCCccccCccccccchhhhhhhhccccccccccceee
Q 003559 530 PA-NTNILYVDLASAELVGSSENERSLPGMVLNTKKPIVYMDNFGDTHSVPGGRLECTMQNIADNFLNTYSSRCYKGVED 608 (811)
Q Consensus 530 ~~-Ninn~~fsL~~L~~vl~~~~~~~Lp~hvan~KKkIpy~D~~g~~~~~~p~rLE~~Mqd~~~~F~~~y~~~~~k~~f~ 608 (811)
.+ |||||||+++||+++++......||+|+|. |||||+|... ..++++|||.| |||+|+ -+.++++.
T Consensus 332 ~~gnI~~h~fsl~fl~~~~~~~~~~~l~~H~a~--Kkip~~~~~~--~~png~K~E~F---iFDvf~-----~~~~~~~~ 399 (482)
T PTZ00339 332 NYGNICSHIFSLDFLKKVAANRLYESTPYHAAR--KKIPYINGPT--DKTMGIKLEAF---IFDIFR-----YAKNVLIL 399 (482)
T ss_pred cccceEEEEEEHHHHHHHhhhhhhhcCCceeec--cccCeeCCCC--CCcceeeehhh---hhhHHH-----hcccccee
Confidence 76 999999999999998753234569999999 9999999432 45689999966 556665 23478889
Q ss_pred ecccceeeeeccCCCchhhhhccccCCCCCCChhhhHHHHHHHHHHHHHHCCcccCcc-cCCCcccccCCCeeEEeC
Q 003559 609 DLDTFMVYNERRRVTSSAKKKRKRADMSLHQTPDGSFLDILRNAYDILCQCHIKLPEI-EGNDKYIDDGPPYLILLH 684 (811)
Q Consensus 609 ~~~R~~~FsPvKn~~~sa~k~~~~~~~~~~~sp~ta~~dl~~~~~~~L~~aG~~vp~~-~~~~~~~~~~P~~~I~L~ 684 (811)
+++|..+|+|+||+++.. .|||+||+.+++++|++||.++|+.+... ...+..+++.|. |.+.
T Consensus 400 ev~R~~eFsPlKNa~g~~-----------~d~p~tar~~l~~~~~~wl~~ag~~~~~~~~~~~~~~Eisp~--~sy~ 463 (482)
T PTZ00339 400 EVDREDEFAPIKNADGAA-----------ADTILNAQKLLLSLHTRWLEAALETVAGNPREGLNLCEISPL--VSYG 463 (482)
T ss_pred eechhhccccccCCCCCC-----------CCCHHHHHHHHHHHHHHHHHHCCCeeeccccCCCceEEecCc--ceeC
Confidence 999999999999988653 36999999999999999999999976421 112335666774 5554
No 4
>cd06424 UGGPase UGGPase catalyzes the synthesis of UDP-Glucose/UDP-Galactose. UGGPase: UDP-Galactose/Glucose Pyrophosphorylase catalyzes the reversible production of UDP-Glucose/UDP-Galactose and pyrophosphate (PPi) from Glucose-1-phosphate/Galactose-1-phosphate and UTP. Its dual substrate specificity distinguishes it from the single substrate enzyme UDP-glucose pyrophosphorylase. It may play a key role in the galactose metabolism in raffinose oligosaccharide (RFO) metabolizing plants. RFO raffinose is a major photoassimilate and is a galactosylderivative of sucrose (Suc) containing a galactose (Gal) moiety. Upon arriving at the sink tissue, the Gal moieties of the RFOs are initially removed by alpha-galactosidase and then are phosphorylated to Gal-1-P. Gal-1-P is converted to UDP-Gal. The UDP-Gal is further metabolized to UDP-Glc via an epimerase reaction. The UDP-Glc can be directly utilized in cell wall metabolism or in Suc synthesis. However, for the Suc synthesis UDP-Glc must be f
Probab=100.00 E-value=2.9e-82 Score=680.51 Aligned_cols=308 Identities=23% Similarity=0.275 Sum_probs=276.8
Q ss_pred EEEEEecCCccccCCCCCCCCCceeeccccCCCCCcchHHHHHHHHHHHHHhHhhcCCcccceEEEecCCCCCchHHHHH
Q 003559 289 LGEIYPLGGSADRLGLVDHETGECLPAAMLPYCGRTLLEGLIRDLQAREFLYFKLYGKQCITPVAIMTSSAKNNHERITS 368 (811)
Q Consensus 289 vavVlLAGGlGTRLG~~~pKgg~~lpV~l~p~sgkTlLql~~e~I~~lq~La~~~~g~~~~IPl~IMTS~~~~Th~~T~~ 368 (811)
+|||+||||||||||+++||| +|||+++ +|+||||+|++||+++|++|.+.++ +.||||||||+ +||++|++
T Consensus 1 ~a~vllaGG~GTRLG~~~pKg--~~~v~~~--~~~s~f~l~~~~i~~l~~~~~~~~~--~~IPl~IMTS~--~Th~~T~~ 72 (315)
T cd06424 1 AVFVLVAGGLGERLGYSGIKI--GLPVELT--TNTTYLQYYLNYIRAFQEASKKGEK--MEIPFVIMTSD--DTHSKTLK 72 (315)
T ss_pred CEEEEecCCCccccCCCCCce--eeeccCC--CCCcHHHHHHHHHHHHHHHhhccCC--CceeEEEECCC--chhHHHHH
Confidence 589999999999999999999 9999987 9999999999999999999876455 89999999999 79999999
Q ss_pred HHHHhCCCCCCCCceEEEecCCeeeEecCCCcc--cccCCCCccccCCCCcHHHHHHHhcCchHHHHHcCceEEEEEeCC
Q 003559 369 LCERLRWFGRGQSSFQLFEQPLVPAVDAEDGQW--LVMRPFAPVCKPGGHGAIWKLAHDKGIFKWFHDNGRKGATVRQVS 446 (811)
Q Consensus 369 fle~n~yFGl~~~qV~~F~Q~~vP~l~~~dgki--~l~~~~~l~~~P~GhGdIy~aL~~sGlLd~l~~~Gikyi~v~~vD 446 (811)
||++|+|||++++||+||+|+++||+++.+|++ .++++++++|+|+||||||+||+++|+||+|+++|+||++|+|||
T Consensus 73 ~fe~n~yFGl~~~~V~fF~Q~~~P~l~~~~g~l~~~l~~~~~i~~~P~GhGdiy~aL~~sGlLd~l~~~Gikyi~v~~vd 152 (315)
T cd06424 73 LLEENNYFGLEKDQVHILKQEKVFCLIDNDAHLALDPDNTYSILTKPHGHGDVHTLLYNSGLLKKWIEAGYKWLVFFQDT 152 (315)
T ss_pred HHHHCCccCCCcccEEEEecCceEEEecCCCCcccccCCCCccccCCCCchHHHHHHHHCCcHHHHHHCCCEEEEEEecc
Confidence 999999999999999999999999998789999 578999999999999999999999999999999999999999999
Q ss_pred CCcccc-cHhHHHHhhhhhhcCCceeEEEeeecCCCCcCceEEEEEecCCCccccceEEEEecccCcccC----CCCCCC
Q 003559 447 NVVAAT-DLTLLALAGIGLHHGKKLGFASCKRSSGATEGINVLIEKKNLDGKWAYGLSCIEYTEFDKFGI----TRGPFS 521 (811)
Q Consensus 447 N~La~v-DP~~l~flG~~~~~~~~~~~~~vvRK~~~~e~vGvL~~~r~~dGk~~~~~~vVEYsEl~~~~~----~~~~~~ 521 (811)
|+|+++ ||.| +|+++.+++++++++|.|+ |.|+||++|+.++.||+ ++++||||||++++.. .+++.+
T Consensus 153 N~L~~~adP~f---iG~~~~~~~d~~~k~v~~~--~~E~vG~~~~~~~~~g~--~~v~nvEYsel~~~~~~~~~~~g~~~ 225 (315)
T cd06424 153 NALAFKAIPAV---LGVSATKSLDMNSLTVPRK--PKEAIGALCKLTKNNGK--SMTINVEYNQLDPLLRASGKDDGDVD 225 (315)
T ss_pred hhhhhccChhh---EEEEecCCCceEeEEEeCC--CCCceeeEEEEecCCCc--eEEEEEEeecCCHHHHhcCCCCCCcc
Confidence 999999 9955 9999999999999987654 57999999986567888 2355699999998741 223344
Q ss_pred CCCcccccccceeeeeEeHHHHHhhhcccccCCccccccccCCCcceecCCCCccccCccccccchhhhhhhhccccccc
Q 003559 522 SNGLQADFPANTNILYVDLASAELVGSSENERSLPGMVLNTKKPIVYMDNFGDTHSVPGGRLECTMQNIADNFLNTYSSR 601 (811)
Q Consensus 522 dg~l~s~f~~Ninn~~fsL~~L~~vl~~~~~~~Lp~hvan~KKkIpy~D~~g~~~~~~p~rLE~~Mqd~~~~F~~~y~~~ 601 (811)
+.+++|+||||||+|+|+|++|.+++++ +.+.+|+|+ || ||.|.++ ..+++|+||||||||+|+.|+ .
T Consensus 226 ~~~~~s~f~gNi~~~~f~l~~~~~~l~~-~~~~~~~~~-n~----ky~d~~~-~~~~~p~rlE~~m~D~~~~f~-----~ 293 (315)
T cd06424 226 DKTGFSPFPGNINQLVFSLGPYMDELEK-TKGAIPEFI-NP----KYKDATK-TAFKSPTRLECMMQDIPLLFE-----E 293 (315)
T ss_pred cccccccCCCeeeeEEEeHHHHHHHHhh-ccccCeeee-cC----CcccCCC-CeecCchHHHHHHHHHHHhhc-----c
Confidence 4567899999999999999999999997 678899887 65 4999873 468899999999999999997 4
Q ss_pred cccceeeecccceeeeeccCCC
Q 003559 602 CYKGVEDDLDTFMVYNERRRVT 623 (811)
Q Consensus 602 ~~k~~f~~~~R~~~FsPvKn~~ 623 (811)
..++++++++||.+|||+||.+
T Consensus 294 ~~~~~~~~~~r~~~fsP~KN~~ 315 (315)
T cd06424 294 DYRVGFTVLDRWLCFSPVKNNL 315 (315)
T ss_pred cceeEEEEEchhhcccccCCCC
Confidence 6799999999999999999963
No 5
>PLN02474 UTP--glucose-1-phosphate uridylyltransferase
Probab=100.00 E-value=5.3e-79 Score=682.47 Aligned_cols=378 Identities=19% Similarity=0.204 Sum_probs=329.3
Q ss_pred hhccCcEEEEEecCCccccCCCCCCCCCceeeccccCCCCCcchHHHHHHHHHHHHHhHhhcCCcccceEEEecCCCCCc
Q 003559 283 IEGLPELGEIYPLGGSADRLGLVDHETGECLPAAMLPYCGRTLLEGLIRDLQAREFLYFKLYGKQCITPVAIMTSSAKNN 362 (811)
Q Consensus 283 le~l~kvavVlLAGGlGTRLG~~~pKgg~~lpV~l~p~sgkTlLql~~e~I~~lq~La~~~~g~~~~IPl~IMTS~~~~T 362 (811)
.++|+|+|||+||||||||||+++||| +|||. +|+||||++++||++++ +.|| +.||||||||+ +|
T Consensus 74 ~~~L~k~avlkLnGGlGTrmG~~~PKs--~i~v~----~~~sfldl~~~qi~~l~----~~~g--~~vPl~iMtS~--~T 139 (469)
T PLN02474 74 KKLLDKLVVLKLNGGLGTTMGCTGPKS--VIEVR----NGLTFLDLIVIQIENLN----KKYG--CNVPLLLMNSF--NT 139 (469)
T ss_pred HHHHhcEEEEEecCCcccccCCCCCce--eEEcC----CCCcHHHHHHHHHHHHH----HHcC--CCceEEEECCC--ch
Confidence 457899999999999999999999999 99986 99999999999999998 5678 89999999999 79
Q ss_pred hHHHHHHHHHhCCCCCCCCceEEEecCCeeeEecCCCcccccCCC---CccccCCCCcHHHHHHHhcCchHHHHHcCceE
Q 003559 363 HERITSLCERLRWFGRGQSSFQLFEQPLVPAVDAEDGQWLVMRPF---APVCKPGGHGAIWKLAHDKGIFKWFHDNGRKG 439 (811)
Q Consensus 363 h~~T~~fle~n~yFGl~~~qV~~F~Q~~vP~l~~~dgki~l~~~~---~l~~~P~GhGdIy~aL~~sGlLd~l~~~Giky 439 (811)
|++|++||++|+||+ .+|++|+|+++||++ .+|+++++.+. +.+|+|+||||+|.+|++||+||+|+++|+||
T Consensus 140 ~~~T~~~l~k~~~~~---~~i~~F~Q~~~P~l~-~~~~~p~~~~~~~~~~~~~P~GhGd~y~aL~~sG~Ld~l~~~G~ey 215 (469)
T PLN02474 140 HDDTQKIVEKYTNSN---IEIHTFNQSQYPRVV-ADDFVPWPSKGKTDKDGWYPPGHGDVFPSLMNSGKLDALLSQGKEY 215 (469)
T ss_pred hHHHHHHHHHcCCCc---cceEEEecCceeeEe-cCCCCcccccCCCCcceeeeCCCchHHHHHHhCChHHHHHhcCCEE
Confidence 999999999999984 589999999999999 66888887554 55699999999999999999999999999999
Q ss_pred EEEEeCCCCcccccHhHHHHhhhhhhcCCceeEEEeeecCCCCcCceEEEEEecCCCccccceEEEEecccCcccCCCCC
Q 003559 440 ATVRQVSNVVAATDLTLLALAGIGLHHGKKLGFASCKRSSGATEGINVLIEKKNLDGKWAYGLSCIEYTEFDKFGITRGP 519 (811)
Q Consensus 440 i~v~~vDN~La~vDP~~l~flG~~~~~~~~~~~~~vvRK~~~~e~vGvL~~~r~~dGk~~~~~~vVEYsEl~~~~~~~~~ 519 (811)
+||+|+||+++.+||.| +||++.++++|.+++ ++|+.+++++|+||. .||+ +++|||+|+|++.. +.
T Consensus 216 ifv~nvDNLga~vDp~~---lg~~~~~~~e~~~ev-~~Kt~~d~kgG~l~~---~dgk----~~lvEysqvp~e~~-~~- 282 (469)
T PLN02474 216 VFIANSDNLGAIVDLKI---LNHLIQNKNEYCMEV-TPKTLADVKGGTLIS---YEGK----VQLLEIAQVPDEHV-NE- 282 (469)
T ss_pred EEEEecCccccccCHHH---HHHHHhcCCceEEEE-eecCCCCCCccEEEE---ECCE----EEEEEEecCCHHHH-Hh-
Confidence 99999999877779976 899999999999997 778889999999997 7999 99999999999962 21
Q ss_pred CCCCCccccccc-ceeeeeEeHHHHHhhhcccccCCccccc-cccCCCcceecCCCCccccCccccccchhhhhhhhccc
Q 003559 520 FSSNGLQADFPA-NTNILYVDLASAELVGSSENERSLPGMV-LNTKKPIVYMDNFGDTHSVPGGRLECTMQNIADNFLNT 597 (811)
Q Consensus 520 ~~dg~l~s~f~~-Ninn~~fsL~~L~~vl~~~~~~~Lp~hv-an~KKkIpy~D~~g~~~~~~p~rLE~~Mqd~~~~F~~~ 597 (811)
.+|. ..|++ |||||||+|++|+++++. +.||+|+ .||| ++| | .+.+|||++|+|++..|+
T Consensus 283 -f~~~--~kf~~fNtnn~w~~L~~l~~~~~~---~~l~~~~I~n~k----~~~--g----~kv~q~Et~ig~ai~~f~-- 344 (469)
T PLN02474 283 -FKSI--EKFKIFNTNNLWVNLKAIKRLVEA---DALKMEIIPNPK----EVD--G----VKVLQLETAAGAAIRFFD-- 344 (469)
T ss_pred -hccc--ccceeeeeeeEEEEHHHHHHHhhc---CCCCceeecCCC----CCC--C----eeEEEeHHHHHHHHHhCC--
Confidence 2233 35998 999999999999999864 4688776 4543 444 3 377999999999999986
Q ss_pred cccccccceeeecccceeeeeccCCCchhhhhccccCCCCCCChhhhHHHHHHHHHHHHHHCCcccCcccCCCcccccCC
Q 003559 598 YSSRCYKGVEDDLDTFMVYNERRRVTSSAKKKRKRADMSLHQTPDGSFLDILRNAYDILCQCHIKLPEIEGNDKYIDDGP 677 (811)
Q Consensus 598 y~~~~~k~~f~~~~R~~~FsPvKn~~~sa~k~~~~~~~~~~~sp~ta~~dl~~~~~~~L~~aG~~vp~~~~~~~~~~~~P 677 (811)
.+...+++|. .|+||||+. ++.+++.|+|..+..|+..+|...- ...|
T Consensus 345 ------~~~~v~VpR~-rF~PVK~~~----------------dll~~rsdly~l~~~~l~~~~~~~~---------~~~p 392 (469)
T PLN02474 345 ------NAIGINVPRS-RFLPVKATS----------------DLLLVQSDLYTLVDGFVIRNKARTN---------PSNP 392 (469)
T ss_pred ------CceEEEEchh-hccCCCCCC----------------CHHHHHHHHHHhccCeEEecCcccC---------CCCC
Confidence 2335667777 499999955 4679999999999999998887531 1245
Q ss_pred CeeEEeCCCccccHHHHhhccCC-CCCCCCcEEEEEeceEEeeceEEEEEEEEEeccCCCCccccCCCcc
Q 003559 678 PYLILLHPALGLLWEVTRQKFKG-GSVSKGSELQIEVAEFLWRNVQLDGSLIIVAENVMGSTRIADNGES 746 (811)
Q Consensus 678 ~~~I~L~P~~~~~~~~~~~k~~~-gsi~~~S~L~VeG~~~f~~~v~ldGslvI~a~~~~g~~~~~~~g~~ 746 (811)
. |.|+|. +.++++|.+||++ +||.++++|+|+|+|+|++||+|.|+|+|.|. .|.+...|+|..
T Consensus 393 ~--IeL~~~-f~~v~~f~~rf~~iPsl~~~d~LtV~Gdv~fG~~v~l~G~v~i~~~--~~~~~~ip~g~~ 457 (469)
T PLN02474 393 S--IELGPE-FKKVANFLSRFKSIPSIVELDSLKVSGDVWFGSGIVLKGKVTITAK--SGVKLEIPDGAV 457 (469)
T ss_pred c--EEECcc-cccHHhHHHhcCCCCCcccCCeEEEeeeeEECCCcEEEEEEEEEcC--CCCeeecCCCcE
Confidence 4 999999 7889999999998 79999999999999999999999999999988 577777888874
No 6
>KOG2388 consensus UDP-N-acetylglucosamine pyrophosphorylase [Cell wall/membrane/envelope biogenesis]
Probab=100.00 E-value=2.7e-78 Score=665.69 Aligned_cols=425 Identities=19% Similarity=0.220 Sum_probs=361.9
Q ss_pred cHHHHHHHHHHcCCccccccCccchhhhhhhhhHHHHHHHHHhhhhccccCCCccccccccchhhHHHHHHHHHHHHHHh
Q 003559 135 DQLFLIKCVIAAGQEHVLNLEPEYVESEARSDIKSALYALVEFIDRLDVNGRNSEAKDAVLEIEQVKDLNKLLKTLAEIE 214 (811)
Q Consensus 135 ~~~~l~~~L~~~gQeHll~~~~~w~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~~~~~~~~~Ll~qL~~ld 214 (811)
+...+...|.++||+|||.+ |+| |+++ ++..|++|++.++
T Consensus 2 ~~~~~~~~l~~~Gq~~l~~~---w~e----------------------------------L~~~---~~~~l~~~ie~l~ 41 (477)
T KOG2388|consen 2 DRTKLHLILLEAGQSHLFTQ---WPE----------------------------------LSEA---DKESLLDQIEVLN 41 (477)
T ss_pred chhHHHHHHHHcChHhHhhh---chh----------------------------------cCHH---HHHHHHHHHHhhc
Confidence 56788999999999999999 555 8777 7889999999999
Q ss_pred ccccCcchhHHHHHHHHHHHHccccccccccccccccccccccccccCCCCcccC--C-ChHHHHHHHHHhhhccC--cE
Q 003559 215 QFYDCVGGIIGYQVEVLELLAQSKFERKTTKSQHVHESMECQFLEIHVPSGLDLS--Q-NTEYAAQAALWGIEGLP--EL 289 (811)
Q Consensus 215 ~~y~~~ggl~~y~~~a~~ll~~s~~~~~~~~~~~~~~~~~~~~~~~~vP~g~~l~--~-~~~~~~~~e~~Gle~l~--kv 289 (811)
.++ +.|+.. ..|.+.. +. .. +..++|+..... . .....++|+..|++.|+ ++
T Consensus 42 l~~--~~~~~~--~~a~~~~--~~---~~--------------~~~p~p~~~~~~~~~~~~~d~d~~~~~G~~~i~~~~~ 98 (477)
T KOG2388|consen 42 LSR--IHGLQR--ISANEDS--KP---VG--------------EIRPVPESKSWPLKERGLDDVDQWWKEGLRLIAEGKV 98 (477)
T ss_pred ccc--cchhhh--cChhhcc--Cc---cc--------------ccCCCCccccceecccCchhhhHHHhcChhhhhcCcc
Confidence 977 466554 3443332 10 11 112455543221 1 22344458889999997 89
Q ss_pred EEEEecCCccccCCCCCCCCCceeeccccCCCCCcchHHHHHHHHHHHHHhHhhcCCcccceEEEecCCCCCchHHHHHH
Q 003559 290 GEIYPLGGSADRLGLVDHETGECLPAAMLPYCGRTLLEGLIRDLQAREFLYFKLYGKQCITPVAIMTSSAKNNHERITSL 369 (811)
Q Consensus 290 avVlLAGGlGTRLG~~~pKgg~~lpV~l~p~sgkTlLql~~e~I~~lq~La~~~~g~~~~IPl~IMTS~~~~Th~~T~~f 369 (811)
|++++|||||||||+++||+ |+|+++| +|+||||+++|+|+++|++|.+..+.++.||||||||. .|++.|++|
T Consensus 99 a~~llaGgqgtRLg~~~pkg--~~~~G~~--~~~slf~~qae~il~lq~~a~~~~~~~~~I~w~ImtS~--~T~e~T~~~ 172 (477)
T KOG2388|consen 99 AVVLLAGGQGTRLGSSGPKG--CYPIGLP--SGKSLFQIQAERILKLQELASMAVSDGVDIPWYIMTSA--FTHEATLEY 172 (477)
T ss_pred eEEEeccCceeeeccCCCcc--eeecCCc--cccchhhhhHHHHHHHHHHHhhhhccCCceEEEEecCC--CccHHhHhH
Confidence 99999999999999999999 9999999 89999999999999999999888877799999999999 799999999
Q ss_pred HHHhCCCCCCCCceEEEecCCeeeEecCCCcccccCCCCccccCCCCcHHHHHHHhcCchHHHHHcCceEEEEEeCCCCc
Q 003559 370 CERLRWFGRGQSSFQLFEQPLVPAVDAEDGQWLVMRPFAPVCKPGGHGAIWKLAHDKGIFKWFHDNGRKGATVRQVSNVV 449 (811)
Q Consensus 370 le~n~yFGl~~~qV~~F~Q~~vP~l~~~dgki~l~~~~~l~~~P~GhGdIy~aL~~sGlLd~l~~~Gikyi~v~~vDN~L 449 (811)
|+.|+||||+++||+||+|+++||++ .+|+++++.+.+++++|+|||++|+|+.++ |++|.++|++|+|||||||+|
T Consensus 173 f~~~~~FGl~~~qv~~f~Q~~l~c~~-~~gk~~le~k~~~a~ap~gngg~y~ai~~~--l~dm~~rgi~~~hiy~VdnvL 249 (477)
T KOG2388|consen 173 FESHKYFGLKPEQVTFFQQGKLPCLD-LDGKFILEQKNSLAAAPDGNGGLYRAIKDQ--LEDMAARGIFYDHIYCVDNVL 249 (477)
T ss_pred HhhcCCCCCChhHeeeeecccccccc-cCCceeccCccchhcCCCCCcHHHHHHHhh--hhHHHhhcccEEEEEEeccee
Confidence 99999999999999999999999999 678899999999999999999999999999 999999999999999999999
Q ss_pred ccc-cHhHHHHhhhhhhcCCceeEEEeeecCCCCcCceEEEEEecCC-CccccceEEEEecccCcccCCCCCCCCCCccc
Q 003559 450 AAT-DLTLLALAGIGLHHGKKLGFASCKRSSGATEGINVLIEKKNLD-GKWAYGLSCIEYTEFDKFGITRGPFSSNGLQA 527 (811)
Q Consensus 450 a~v-DP~~l~flG~~~~~~~~~~~~~vvRK~~~~e~vGvL~~~r~~d-Gk~~~~~~vVEYsEl~~~~~~~~~~~dg~l~s 527 (811)
+++ ||+| +||++.++++++.++ |+|.++.|.||++|. .+ |. ++||||+|++++. +.....||..+.
T Consensus 250 ~k~aDP~f---iG~~it~~~d~~~k~-V~k~~p~E~vG~~~~---~~~G~----~~vvEYsEi~~~~-a~~~~~d~g~l~ 317 (477)
T KOG2388|consen 250 LKVADPVF---IGFSITKEADVAAKV-VPKINPGEVVGIVAL---KGQGT----PLVVEYSELDAEL-AKAKAPDGGRLL 317 (477)
T ss_pred eEecccce---eeEEeechhhHhhhh-ccccCCCCceEEEEe---cCCCc----eeEEEecccCHHH-HhhcccccCccc
Confidence 998 9955 999999999999996 888889999999998 45 87 9999999999996 667777733333
Q ss_pred ccccceeeeeEeHHHHHhhhcccccCCccccccccCCCcceecCCCCcc---ccCccccccchhhhhhhhcccccccccc
Q 003559 528 DFPANTNILYVDLASAELVGSSENERSLPGMVLNTKKPIVYMDNFGDTH---SVPGGRLECTMQNIADNFLNTYSSRCYK 604 (811)
Q Consensus 528 ~f~~Ninn~~fsL~~L~~vl~~~~~~~Lp~hvan~KKkIpy~D~~g~~~---~~~p~rLE~~Mqd~~~~F~~~y~~~~~k 604 (811)
.+++|||||||+++||+++... ....||+|+|. |||||+|.+|... .++++++|.| +|++|+ ...+
T Consensus 318 ~~agnI~nh~ft~dFLkk~~~~-~~~~lp~H~a~--kKip~~~~~g~~~kP~kpnGik~E~f---ifdvf~-----~~k~ 386 (477)
T KOG2388|consen 318 FNAGNICNHFFTLDFLKKVTRA-SVPLLPYHKAE--KKIPYVDSTGKLVKPTKPNGIKLEQF---IFDVFP-----SAKK 386 (477)
T ss_pred cCCccHHHHHHhhHHHHHhhhc-ccccchhhhhh--ccccccccCCcccCCCCCCceeEEee---eeeecc-----cccc
Confidence 4455999999999999999886 67779999999 9999999876543 3567899955 677776 2368
Q ss_pred ceeeecccceeeeeccCCCchhhhhccccCCCCCCChhhhHHHHHHHHHHHHHHCCcccCc
Q 003559 605 GVEDDLDTFMVYNERRRVTSSAKKKRKRADMSLHQTPDGSFLDILRNAYDILCQCHIKLPE 665 (811)
Q Consensus 605 ~~f~~~~R~~~FsPvKn~~~sa~k~~~~~~~~~~~sp~ta~~dl~~~~~~~L~~aG~~vp~ 665 (811)
+++.+++|..+|+|+||...+. .|||+||+.++++.|..|+..+|+.+-+
T Consensus 387 f~~meV~Re~efSPlKng~~~~-----------~D~p~T~~~~~l~~h~~wi~~~g~~f~~ 436 (477)
T KOG2388|consen 387 FGLMEVPREEEFSPLKNGGKSS-----------TDNPSTARIALLRLHIRWIEKAGGIFSD 436 (477)
T ss_pred eeEEecchhhhcCccccCCCCC-----------CCChhHHHHHHHHhhhhehhccCcEEec
Confidence 8899999999999999977653 4699999999999999999999998753
No 7
>PF01704 UDPGP: UTP--glucose-1-phosphate uridylyltransferase; InterPro: IPR002618 This family consists of UTP--glucose-1-phosphate uridylyltransferases (2.7.7.9 from EC). Also known as UDP-glucose pyrophosphorylase (UDPGP) and Glucose-1-phosphate uridylyltransferase. UTP--glucose-1-phosphate uridylyltransferase catalyses the interconversion of MgUTP + glucose-1-phosphate and UDP-glucose + MgPPi []. UDP-glucose is an important intermediate in mammalian carbohydrate interconversion involved in various metabolic roles depending on tissue type []. In Dictyostelium discoideum (Slime mold), mutants in this enzyme abort the development cycle []. Also within this family is UDP-N-acetylglucosamine pyrophosphorylase (Q16222 from SWISSPROT) [] and two hypothetical proteins from Borrelia burgdorferi, the Lyme disease spirochaete (O51893 from SWISSPROT and O51036 from SWISSPROT).; GO: 0016779 nucleotidyltransferase activity, 0008152 metabolic process; PDB: 2OEG_A 2OEF_A 2YQS_A 2YQJ_A 2YQH_B 2YQC_A 3OH4_A 3OGZ_A 3OH3_A 3OH1_A ....
Probab=100.00 E-value=1.6e-74 Score=643.37 Aligned_cols=408 Identities=22% Similarity=0.243 Sum_probs=302.8
Q ss_pred hHHHHHHHHHHHHccccccccccccccccccccccccccCCC-CcccCCChHHHHHH-HHHhhhccCcEEEEEecCCccc
Q 003559 223 IIGYQVEVLELLAQSKFERKTTKSQHVHESMECQFLEIHVPS-GLDLSQNTEYAAQA-ALWGIEGLPELGEIYPLGGSAD 300 (811)
Q Consensus 223 l~~y~~~a~~ll~~s~~~~~~~~~~~~~~~~~~~~~~~~vP~-g~~l~~~~~~~~~~-e~~Gle~l~kvavVlLAGGlGT 300 (811)
+..|+..+.+++.++.. .. ..++.+..|. ....++++-....+ ...+...++|+|||+|||||||
T Consensus 2 ~~~f~~l~~~yl~~~~~--~~-----------~~~~~i~~~~~~~~~~~~~l~~~~~~~~~~~~~~~kvavl~LaGGlGT 68 (420)
T PF01704_consen 2 LDSFFSLFRRYLSESKS--HQ-----------IDWDKIMPPPPEEVVDYESLKEYEWDEGLEAIALGKVAVLKLAGGLGT 68 (420)
T ss_dssp HHHHHHHHHHHHHCCCC--CS-------------GGGEEE-GTGCEEEHHHHHHSCHHHHHHHHHTTCEEEEEEEESBSG
T ss_pred hHHHHHHHHHHHHhccc--CC-----------cccccCCCCChhhcCChhHhcccccccchhHHhhCCEEEEEEcCcccC
Confidence 45788889999987321 11 1233332232 22222222111112 3456666779999999999999
Q ss_pred cCCCCCCCCCceeeccccCCCCCcchHHHHHHHHHHHHHhHhhcCCcccceEEEecCCCCCchHHHHHHHHHhCCCCCCC
Q 003559 301 RLGLVDHETGECLPAAMLPYCGRTLLEGLIRDLQAREFLYFKLYGKQCITPVAIMTSSAKNNHERITSLCERLRWFGRGQ 380 (811)
Q Consensus 301 RLG~~~pKgg~~lpV~l~p~sgkTlLql~~e~I~~lq~La~~~~g~~~~IPl~IMTS~~~~Th~~T~~fle~n~yFGl~~ 380 (811)
|||+++||| ++||. +|+||||++++||++++ ++|| +.||||||||+ +||++|++||++ |||++.
T Consensus 69 rlG~~~pK~--~~~v~----~~~t~ldl~~~qi~~l~----~~~~--~~iPl~iMtS~--~T~~~T~~~l~k--yfg~~~ 132 (420)
T PF01704_consen 69 RLGCSGPKG--LIPVR----EGKTFLDLIVEQIEALN----KKYG--VDIPLYIMTSF--NTHEDTRKFLEK--YFGLDV 132 (420)
T ss_dssp CCTESSBGG--GSEEE----TTEEHHHHHHHHHHHHH----HHHT--TT-EEEEEEET--TTHHHHHHHHHH--GCGSSC
T ss_pred ccCCCCCCc--ceecC----CcccHHHHHHHHHHHHh----cccc--ccceEEEecCc--ccHHHHHHHHHH--hcCCCc
Confidence 999999999 99997 99999999999999998 5677 89999999999 799999999999 999987
Q ss_pred CceEEEecCCeeeEecCCCcccccCCC-----CccccCCCCcHHHHHHHhcCchHHHHHcCceEEEEEeCCCCccc-ccH
Q 003559 381 SSFQLFEQPLVPAVDAEDGQWLVMRPF-----APVCKPGGHGAIWKLAHDKGIFKWFHDNGRKGATVRQVSNVVAA-TDL 454 (811)
Q Consensus 381 ~qV~~F~Q~~vP~l~~~dgki~l~~~~-----~l~~~P~GhGdIy~aL~~sGlLd~l~~~Gikyi~v~~vDN~La~-vDP 454 (811)
+ |++|+|+++||++ .+|+++++.+. ...|+|+||||||.||++||+||+|+++|+||+||+|||| |++ +||
T Consensus 133 ~-v~~F~Q~~~P~i~-~d~~~~l~~~~~~~~~~~~w~P~GhGdi~~aL~~sG~Ld~l~~~G~eyifv~nvDN-L~a~~Dp 209 (420)
T PF01704_consen 133 D-VFFFKQSKLPAID-ADGKLPLESKPKDSIAEDEWYPPGHGDIYRALYNSGLLDKLLARGIEYIFVSNVDN-LGAVVDP 209 (420)
T ss_dssp C-EEEEEE-EEEEEE-TTTTCBEEETTEESEEEGGEEE-TGGGHHHHHHHTTHHHHHHHTT--EEEEEETTB-TT-TT-H
T ss_pred c-eEEEeecCcceEe-CCCccccccccccccchhhccCCCCcceehhhhccChHHHHHHcCCeEEEEEecCC-cccccCH
Confidence 7 9999999999999 67888887654 2369999999999999999999999999999999999999 555 599
Q ss_pred hHHHHhhhhhhcCCceeEEEeeecCCCCcCceEEEEEecCCCccccceEEEEecccCcccCCCCCCCCCCccccccc-ce
Q 003559 455 TLLALAGIGLHHGKKLGFASCKRSSGATEGINVLIEKKNLDGKWAYGLSCIEYTEFDKFGITRGPFSSNGLQADFPA-NT 533 (811)
Q Consensus 455 ~~l~flG~~~~~~~~~~~~~vvRK~~~~e~vGvL~~~r~~dGk~~~~~~vVEYsEl~~~~~~~~~~~dg~l~s~f~~-Ni 533 (811)
.| +||++.++++|++++ ++|+.++|++|+||+ .||+ +++|||+|+|++..++.++.++ |.. ||
T Consensus 210 ~~---lG~~~~~~~~~~~ev-v~Kt~~dek~Gvl~~---~~G~----~~vvEysqip~~~~~~~~~~~~-----~~~Fnt 273 (420)
T PF01704_consen 210 VF---LGYMIEKNADFGMEV-VPKTSPDEKGGVLCR---YDGK----LQVVEYSQIPKEHMAEFKDIKG-----FLLFNT 273 (420)
T ss_dssp HH---HHHHHHTT-SEEEEE-EE-CSTTTSSEEEEE---ETTE----EEEEEGGGS-HHGHHHHTSTTT-----SBEEEE
T ss_pred HH---HHHHHhccchhheee-eecCCCCCceeEEEE---eCCc----cEEEEeccCCHHHHHhhhcccc-----ceEEEe
Confidence 66 899999999999997 677789999999998 7999 9999999999996433333333 554 99
Q ss_pred eeeeEeHHHHHhhhcccccCCccccccccCCCcceecCCCCccccCccccccchhhhhhhhccccccccccceeeecccc
Q 003559 534 NILYVDLASAELVGSSENERSLPGMVLNTKKPIVYMDNFGDTHSVPGGRLECTMQNIADNFLNTYSSRCYKGVEDDLDTF 613 (811)
Q Consensus 534 nn~~fsL~~L~~vl~~~~~~~Lp~hvan~KKkIpy~D~~g~~~~~~p~rLE~~Mqd~~~~F~~~y~~~~~k~~f~~~~R~ 613 (811)
||+||+|++|+++++. ....||+|++. |+|||+|. .++.+|||++|++++..|.+ ...++++|
T Consensus 274 nNi~~~l~~l~~~~~~-~~~~Lp~h~a~--Kki~~~d~-----~~~~~q~Et~i~~~i~~f~~--------~~~v~V~R- 336 (420)
T PF01704_consen 274 NNIWFSLDFLKRLLER-DELQLPIHVAK--KKIPYVDN-----GIKVIQFETAIGFAIFQFDN--------SFAVEVPR- 336 (420)
T ss_dssp EEEEEEHHHHHHHHHT-TTCCS-EEEEE--EESSEECT-----EEEEEEEECGGGGGGGGCTS--------EEEEEE-G-
T ss_pred ceeeEEHHHHHHHHHh-ccccCccEEcc--hhcccccC-----CccEEeehhhhhchHhhccC--------cEEEEEcH-
Confidence 9999999999999986 56789999988 99999993 24889999999999988852 22347889
Q ss_pred eeeeeccCCCchhhhhccccCCCCCCChhhhHHHHHHHHHHHHHHCCcccCcccCCCcccccC-CCeeEEeCCCccccHH
Q 003559 614 MVYNERRRVTSSAKKKRKRADMSLHQTPDGSFLDILRNAYDILCQCHIKLPEIEGNDKYIDDG-PPYLILLHPALGLLWE 692 (811)
Q Consensus 614 ~~FsPvKn~~~sa~k~~~~~~~~~~~sp~ta~~dl~~~~~~~L~~aG~~vp~~~~~~~~~~~~-P~~~I~L~P~~~~~~~ 692 (811)
.+|+||||+. +. .+++..-+.+............. ..++|.|++. +++++
T Consensus 337 ~rF~PvKn~~-dL---------------------------l~~~Sd~y~~~~~~~~~~~~~~~~~~p~i~lg~~-f~~v~ 387 (420)
T PF01704_consen 337 DRFAPVKNTS-DL---------------------------LLVRSDLYDLDDGTLVRNPLRAFHTRPLIKLGDH-FKKVD 387 (420)
T ss_dssp GG--B-SSHH-HH---------------------------HHHHSTTEEEETTEEEEHCCHCSSCHHEEEECGG-GSSHH
T ss_pred HHcCCccccC-cc---------------------------eeeccceeccccceeeecccccCCCCCeeccCcc-cCchH
Confidence 8999999943 21 11222112221111000001111 2336999987 58899
Q ss_pred HHhhccCC-CCCCCCcEEEEEeceEEeeceEEE
Q 003559 693 VTRQKFKG-GSVSKGSELQIEVAEFLWRNVQLD 724 (811)
Q Consensus 693 ~~~~k~~~-gsi~~~S~L~VeG~~~f~~~v~ld 724 (811)
++.+||+. +||.++++|+|.|+++|++||.|+
T Consensus 388 ~~~~r~~~ip~l~~~~~l~v~gdv~fg~~v~lk 420 (420)
T PF01704_consen 388 DFEKRFPSIPSLLELDSLTVSGDVTFGKNVVLK 420 (420)
T ss_dssp HHHHHBSSS-BETTEEEEEEESSEEE-TT-EEE
T ss_pred HhhhhcCCCCCcccCCcceEecceEECCCcEeC
Confidence 99999998 799999999999999999999985
No 8
>cd04193 UDPGlcNAc_PPase UDPGlcNAc pyrophosphorylase catalayzes the synthesis of UDPGlcNAc. UDP-N-acetylglucosamine (UDPGlcNAc) pyrophosphorylase (UAP) (also named GlcNAc1P uridyltransferase), catalyzes the reversible conversion of UTP and GlcNAc1 to PPi and UDPGlcNAc. UDP-N-acetylglucosamine (UDPGlcNAc), the activated form of GlcNAc, is a key precursor of N- and O-linked glycosylations. It is essential for the synthesis of chitin (a major component of the fungal cell wall) and of the glycosylphosphatidylinositol (GPI) linker which anchors a variety of cell surface proteins to the plasma membrane. In bacteria, UDPGlcNAc represents an essential precursor for both peptidoglycan and lipopolysaccharide biosynthesis. Human UAP has two isoforms, resulting from alternative splicing of a single gene and differing by the presence or absence of 17 amino acids. UDPGlcNAc pyrophosphorylase shares significant sequence and structure conservation with UDPglucose pyrophosphorylase.
Probab=100.00 E-value=1.3e-72 Score=610.70 Aligned_cols=315 Identities=23% Similarity=0.313 Sum_probs=286.5
Q ss_pred HHHHHhhhccC--cEEEEEecCCccccCCCCCCCCCceeeccccCCCCCcchHHHHHHHHHHHHHhHhhcCCcccceEEE
Q 003559 277 QAALWGIEGLP--ELGEIYPLGGSADRLGLVDHETGECLPAAMLPYCGRTLLEGLIRDLQAREFLYFKLYGKQCITPVAI 354 (811)
Q Consensus 277 ~~e~~Gle~l~--kvavVlLAGGlGTRLG~~~pKgg~~lpV~l~p~sgkTlLql~~e~I~~lq~La~~~~g~~~~IPl~I 354 (811)
+|++.|+++|+ ++|+|+||||+|||||++.||+ ++||+++ +|+||||+++++|++++.++.+.+|+++.|||+|
T Consensus 2 ~~~~~G~~~i~~~~va~viLaGG~GTRLg~~~PK~--l~pv~~~--~~k~ll~~~~e~l~~l~~~~~~~~~~~~~ip~~i 77 (323)
T cd04193 2 EWEEAGLKAIAEGKVAVLLLAGGQGTRLGFDGPKG--MFPVGLP--SKKSLFQLQAERILKLQELAGEASGKKVPIPWYI 77 (323)
T ss_pred hHHHHhHHHHhcCCEEEEEECCCcccccCCCCCeE--EEEecCC--CCCcHHHHHHHHHHHHHHHHhhccCCCCCceEEE
Confidence 57789999999 9999999999999999999999 9999976 9999999999999999999988888889999999
Q ss_pred ecCCCCCchHHHHHHHHHhCCCCCCCCceEEEecCCeeeEecCCCcccccCCCCccccCCCCcHHHHHHHhcCchHHHHH
Q 003559 355 MTSSAKNNHERITSLCERLRWFGRGQSSFQLFEQPLVPAVDAEDGQWLVMRPFAPVCKPGGHGAIWKLAHDKGIFKWFHD 434 (811)
Q Consensus 355 MTS~~~~Th~~T~~fle~n~yFGl~~~qV~~F~Q~~vP~l~~~dgki~l~~~~~l~~~P~GhGdIy~aL~~sGlLd~l~~ 434 (811)
|||+ +||++|++||++|+|||+++++|++|+|+++||++ .+|+++++++++++|+|+||||||.+|+++|+|++|++
T Consensus 78 mtS~--~t~~~t~~~~~~~~~fGl~~~~i~~f~Q~~~P~~~-~~g~~~l~~~~~~~~~P~GhG~i~~aL~~sG~l~~l~~ 154 (323)
T cd04193 78 MTSE--ATHEETRKFFKENNYFGLDPEQVHFFQQGMLPCVD-FDGKILLEEKGKIAMAPNGNGGLYKALQTAGILEDMKK 154 (323)
T ss_pred EcCh--hHhHHHHHHHHhCCcCCCCCceEEEEecCceeeEc-CCCccccCCCCccccCCCCchHHHHHHHHCChHHHHHh
Confidence 9998 69999999999999999999999999999999998 78999999999999999999999999999999999999
Q ss_pred cCceEEEEEeCCCCcccc-cHhHHHHhhhhhhcCCceeEEEeeecCCCCcCceEEEEEecCCCccccceEEEEecccCcc
Q 003559 435 NGRKGATVRQVSNVVAAT-DLTLLALAGIGLHHGKKLGFASCKRSSGATEGINVLIEKKNLDGKWAYGLSCIEYTEFDKF 513 (811)
Q Consensus 435 ~Gikyi~v~~vDN~La~v-DP~~l~flG~~~~~~~~~~~~~vvRK~~~~e~vGvL~~~r~~dGk~~~~~~vVEYsEl~~~ 513 (811)
+|+||++|+||||+|+++ ||.| +|+++.++++|++++ ++|+.++|+||++|. .||+ +++|||+|+|++
T Consensus 155 ~G~~yi~v~~vDN~L~~~~Dp~~---lG~~~~~~~~~~~kv-v~k~~~~ekvG~l~~---~~g~----~~vvEysel~~~ 223 (323)
T cd04193 155 RGIKYIHVYSVDNILVKVADPVF---IGFCISKGADVGAKV-VRKRYPTEKVGVVVL---VDGK----PQVVEYSEISDE 223 (323)
T ss_pred CCCEEEEEEecCcccccccCHHH---hHHHHHcCCceEEEE-EECCCCCCceeEEEE---ECCe----EEEEEeecCCHH
Confidence 999999999999999987 9966 899999999999997 677779999999998 6999 899999999999
Q ss_pred cCCCCCCCCCCccccccc-ceeeeeEeHHHHHhhhcccccCCccccccccCCCcceecCCCCc---cccCccccccchhh
Q 003559 514 GITRGPFSSNGLQADFPA-NTNILYVDLASAELVGSSENERSLPGMVLNTKKPIVYMDNFGDT---HSVPGGRLECTMQN 589 (811)
Q Consensus 514 ~~~~~~~~dg~l~s~f~~-Ninn~~fsL~~L~~vl~~~~~~~Lp~hvan~KKkIpy~D~~g~~---~~~~p~rLE~~Mqd 589 (811)
. .+...++|.+. |.. |||+|||+++||+++++. ....||+|+|. |||||+|..|.. ..++++|||+||+|
T Consensus 224 ~-~~~~~~~g~l~--f~~~ni~~~~fsl~fl~~~~~~-~~~~l~~h~a~--Kki~~~d~~~~~~~p~~~n~~klE~fifd 297 (323)
T cd04193 224 L-AEKRDADGELQ--YNAGNIANHFFSLDFLEKAAEM-EEPSLPYHIAK--KKIPYVDLEGGLVKPDEPNGIKLELFIFD 297 (323)
T ss_pred H-HhccCcCCcEe--cccchHhhheeCHHHHHHHHhh-ccccCCceEec--cccCcccCcCcEeccCCCcEEEeHHHHHH
Confidence 6 44455677774 655 999999999999999875 44579999988 999999976543 23467999999999
Q ss_pred hhhhhccccccccccceeeecccceeeeeccCCC
Q 003559 590 IADNFLNTYSSRCYKGVEDDLDTFMVYNERRRVT 623 (811)
Q Consensus 590 ~~~~F~~~y~~~~~k~~f~~~~R~~~FsPvKn~~ 623 (811)
++..|+ ++...+++|..+|+||||++
T Consensus 298 ~~~~~~--------~~~~~eV~R~~~F~PvKn~~ 323 (323)
T cd04193 298 VFPFAK--------NFVCLEVDREEEFSPLKNAD 323 (323)
T ss_pred HHHhCC--------ceEEEEEChhhccccCcCCC
Confidence 888763 66788899999999999964
No 9
>cd00897 UGPase_euk Eukaryotic UGPase catalyses the synthesis of UDP-Glucose. UGPase (UDP-Glucose Pyrophosphorylase) catalyzes the reversible production of UDP-Glucose and pyrophosphate (PPi) from Glucose-1-phosphate and UTP. UDP-glucose plays pivotal roles in galactose utilization, in glycogen synthesis, and in the synthesis of the carbohydrate moieties of glycolipids, glycoproteins, and proteoglycans. UGPase is found in both prokaryotes and eukaryotes. Interestingly, while the prokaryotic and eukaryotic forms of UGPase catalyze the same reaction, they share low sequence similarity. This family consists of mainly eukaryotic UTP-glucose-1-phosphate uridylyltransferases.
Probab=100.00 E-value=2.4e-69 Score=578.54 Aligned_cols=284 Identities=20% Similarity=0.240 Sum_probs=251.6
Q ss_pred cCcEEEEEecCCccccCCCCCCCCCceeeccccCCCCCcchHHHHHHHHHHHHHhHhhcCCcccceEEEecCCCCCchHH
Q 003559 286 LPELGEIYPLGGSADRLGLVDHETGECLPAAMLPYCGRTLLEGLIRDLQAREFLYFKLYGKQCITPVAIMTSSAKNNHER 365 (811)
Q Consensus 286 l~kvavVlLAGGlGTRLG~~~pKgg~~lpV~l~p~sgkTlLql~~e~I~~lq~La~~~~g~~~~IPl~IMTS~~~~Th~~ 365 (811)
|+|+|||+||||||||||+++||| ++||. +|+||||++++||++++ +.+| +.||||||||+ +||++
T Consensus 1 l~kvavl~LaGG~GTRLG~~~pKg--~~~v~----~~~s~l~l~~~~i~~l~----~~~~--~~iPl~iMtS~--~T~~~ 66 (300)
T cd00897 1 LNKLVVLKLNGGLGTSMGCTGPKS--LIEVR----DGKTFLDLTVQQIEHLN----KTYG--VDVPLVLMNSF--NTDED 66 (300)
T ss_pred CCcEEEEEecCCcccccCCCCCce--eeecC----CCCcHHHHHHHHHHHHH----HHcC--CCceEEEECCC--cchHH
Confidence 569999999999999999999999 99995 99999999999999999 4677 89999999999 79999
Q ss_pred HHHHHHHhCCCCCCCCceEEEecCCeeeEecCCCccccc---CCCCccccCCCCcHHHHHHHhcCchHHHHHcCceEEEE
Q 003559 366 ITSLCERLRWFGRGQSSFQLFEQPLVPAVDAEDGQWLVM---RPFAPVCKPGGHGAIWKLAHDKGIFKWFHDNGRKGATV 442 (811)
Q Consensus 366 T~~fle~n~yFGl~~~qV~~F~Q~~vP~l~~~dgki~l~---~~~~l~~~P~GhGdIy~aL~~sGlLd~l~~~Gikyi~v 442 (811)
|++||++|++ .++||++|+|+++||++ .+|++.++ ++++++|+|+||||+|.||++||+||+|+++|+||++|
T Consensus 67 T~~~l~~~~~---~~~~v~~F~Q~~~P~~~-~~~~~~l~~~~~~~~~~~~P~GhG~i~~aL~~sG~L~~l~~~G~~yi~v 142 (300)
T cd00897 67 TKKILKKYAG---VNVDIHTFNQSRYPRIS-KETLLPVPSWADSPDEEWYPPGHGDIFESLYNSGLLDTLLAQGKEYLFV 142 (300)
T ss_pred HHHHHHHcCC---CccCeEEEecCCcccCc-cccCccccccCCCcceeeccCCCchHHHHHHHCCcHHHHHhcCCEEEEE
Confidence 9999999886 78999999999999999 67888887 88999999999999999999999999999999999999
Q ss_pred EeCCCCcccccHhHHHHhhhhhhcCCceeEEEeeecCCCCcCceEEEEEecCCCccccceEEEEecccCcccCCCCCCCC
Q 003559 443 RQVSNVVAATDLTLLALAGIGLHHGKKLGFASCKRSSGATEGINVLIEKKNLDGKWAYGLSCIEYTEFDKFGITRGPFSS 522 (811)
Q Consensus 443 ~~vDN~La~vDP~~l~flG~~~~~~~~~~~~~vvRK~~~~e~vGvL~~~r~~dGk~~~~~~vVEYsEl~~~~~~~~~~~d 522 (811)
+||||+++.+||.| +||++.++++|++++ ++|+.++|+||++|+ .||+ +++|||+|+|++...+. +
T Consensus 143 ~nvDNL~a~~Dp~~---lg~~~~~~~~~~~ev-v~Kt~~dek~G~l~~---~~g~----~~vvEyse~p~e~~~~~---~ 208 (300)
T cd00897 143 SNIDNLGATVDLRI---LNHMVDNKAEYIMEV-TDKTRADVKGGTLIQ---YEGK----LRLLEIAQVPKEHVDEF---K 208 (300)
T ss_pred EecccccccCCHHH---HHHHHhcCCceEEEE-eecCCCCCcccEEEE---ECCE----EEEEEeccCCHHHHHhh---c
Confidence 99999766669966 899999999999996 788889999999997 7999 99999999999862211 2
Q ss_pred CCccccccc-ceeeeeEeHHHHHhhhcccccCCccccccccCCCcceecCCCCccccCccccccchhhhhhhhccccccc
Q 003559 523 NGLQADFPA-NTNILYVDLASAELVGSSENERSLPGMVLNTKKPIVYMDNFGDTHSVPGGRLECTMQNIADNFLNTYSSR 601 (811)
Q Consensus 523 g~l~s~f~~-Ninn~~fsL~~L~~vl~~~~~~~Lp~hvan~KKkIpy~D~~g~~~~~~p~rLE~~Mqd~~~~F~~~y~~~ 601 (811)
+.+ .|+. |||||||+++||+++++. ....||+|++. |+|+ ++ ++++|||++|+|++..|+
T Consensus 209 ~~~--~~~~~nt~n~~~~l~~L~~~~~~-~~~~lp~h~~~--K~v~---p~-----~~~~qlE~~i~da~~~~~------ 269 (300)
T cd00897 209 SIK--KFKIFNTNNLWVNLKAVKRVVEE-NALDLEIIVNP--KTVD---GG-----LNVIQLETAVGAAIKNFD------ 269 (300)
T ss_pred Ccc--cceEEEEeEEEEEHHHHHHHHHh-ccCCCCeeecc--cccC---CC-----CCEEEeHhHhhhHHHhCC------
Confidence 333 4887 999999999999999875 44569999987 7764 22 488999999999998875
Q ss_pred cccceeeecccceeeeeccCCC
Q 003559 602 CYKGVEDDLDTFMVYNERRRVT 623 (811)
Q Consensus 602 ~~k~~f~~~~R~~~FsPvKn~~ 623 (811)
.+.+.+++|. .|+||||..
T Consensus 270 --~~~~~eV~R~-rF~PvKn~~ 288 (300)
T cd00897 270 --NALGVNVPRS-RFLPVKTTS 288 (300)
T ss_pred --CcEEEEEChh-hcCCCCChH
Confidence 3446778887 599999955
No 10
>KOG2638 consensus UDP-glucose pyrophosphorylase [Carbohydrate transport and metabolism]
Probab=100.00 E-value=5e-65 Score=548.23 Aligned_cols=450 Identities=20% Similarity=0.230 Sum_probs=353.6
Q ss_pred hhhhhhHHHHHHHHHhhhhccccCCCccccccccchhhHHHHHHHHHHHHHHhccccCcchhHHHHHHHHHHHHcccccc
Q 003559 162 EARSDIKSALYALVEFIDRLDVNGRNSEAKDAVLEIEQVKDLNKLLKTLAEIEQFYDCVGGIIGYQVEVLELLAQSKFER 241 (811)
Q Consensus 162 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~~~~~~~~~Ll~qL~~ld~~y~~~ggl~~y~~~a~~ll~~s~~~~ 241 (811)
.+.+.||++|++|..+.+. .+++.|-.++.. |+....+.|.+...
T Consensus 26 ~~~s~mk~~l~~l~~~~~~--------------------~~k~~~~~e~~~-------------F~~Lf~RyL~~~~~-- 70 (498)
T KOG2638|consen 26 EALSQMKNELDKLLSTSEP--------------------EDKNHFKTELSG-------------FFNLFSRYLREKAP-- 70 (498)
T ss_pred HHHHHHHHHHHhccccCch--------------------hhhhcchhhHHH-------------HHHHHHHHHhccCC--
Confidence 4668999999999998652 256666554432 34444566654310
Q ss_pred ccccccccccccccccccc-cCCCCcccCCChHHHHHHHHHhhhccCcEEEEEecCCccccCCCCCCCCCceeeccccCC
Q 003559 242 KTTKSQHVHESMECQFLEI-HVPSGLDLSQNTEYAAQAALWGIEGLPELGEIYPLGGSADRLGLVDHETGECLPAAMLPY 320 (811)
Q Consensus 242 ~~~~~~~~~~~~~~~~~~~-~vP~g~~l~~~~~~~~~~e~~Gle~l~kvavVlLAGGlGTRLG~~~pKgg~~lpV~l~p~ 320 (811)
. ..|+.+ ++|++....+++- ... +.+.+.|.|+|||+|+||+||.|||.+||+ +++|+
T Consensus 71 ~------------~~wdkI~~p~~d~vv~y~~i--~~~-~~~~~~L~KLavlKLNGGlGttmGc~gPKS--~ieVR---- 129 (498)
T KOG2638|consen 71 T------------IDWDKIRPPPEDAVVPYDDI--KNV-ELSKSLLNKLAVLKLNGGLGTTMGCKGPKS--VIEVR---- 129 (498)
T ss_pred c------------cchhhccCCChhhccccccc--cch-hhHHHhhhheEEEEecCCcCCccccCCCce--eEEEc----
Confidence 1 233444 4444444444331 112 567788999999999999999999999999 99999
Q ss_pred CCCcchHHHHHHHHHHHHHhHhhcCCcccceEEEecCCCCCchHHHHHHHHHhCCCCCCCCceEEEecCCeeeEecCCCc
Q 003559 321 CGRTLLEGLIRDLQAREFLYFKLYGKQCITPVAIMTSSAKNNHERITSLCERLRWFGRGQSSFQLFEQPLVPAVDAEDGQ 400 (811)
Q Consensus 321 sgkTlLql~~e~I~~lq~La~~~~g~~~~IPl~IMTS~~~~Th~~T~~fle~n~yFGl~~~qV~~F~Q~~vP~l~~~dgk 400 (811)
+|.||+|+.++||+.|+ ++|+ +.+||++|||+ +|+++|.+++++|.++ +.+|+.|.|+++|.++.++.-
T Consensus 130 ~g~tFLDL~V~QIe~LN----~~Y~--~dVPlvLMNSf--nTdedT~kil~ky~~~---kv~i~TF~QS~~PRi~~etlL 198 (498)
T KOG2638|consen 130 DGLTFLDLTVRQIENLN----KTYN--VDVPLVLMNSF--NTDEDTQKILKKYAGS---KVDIKTFNQSKYPRIDKETLL 198 (498)
T ss_pred CCCchhHHHHHHHHHHH----hhcC--CCCCEEEeccc--ccchHHHHHHHHhcCC---ceeEEEeccccCCcccccccc
Confidence 99999999999999999 7888 89999999999 8999999999999875 568999999999999976554
Q ss_pred cccc---CCCCccccCCCCcHHHHHHHhcCchHHHHHcCceEEEEEeCCCCcccccHhHHHHhhhhhhcCCceeEEEeee
Q 003559 401 WLVM---RPFAPVCKPGGHGAIWKLAHDKGIFKWFHDNGRKGATVRQVSNVVAATDLTLLALAGIGLHHGKKLGFASCKR 477 (811)
Q Consensus 401 i~l~---~~~~l~~~P~GhGdIy~aL~~sGlLd~l~~~Gikyi~v~~vDN~La~vDP~~l~flG~~~~~~~~~~~~~vvR 477 (811)
++.. +...-+|+||||||+|.+|+.||+||+|+++|++|+||+|+||++|.+|..| +.+.+..+.+|.|++ +.
T Consensus 199 Pv~~~~~d~~~d~WYPPGHGd~f~sl~nSG~Ld~llaqGkEylFVSNiDNLGAtvDL~I---Ln~~i~~~~ey~MEv-Td 274 (498)
T KOG2638|consen 199 PVPKLEADSDNEAWYPPGHGDLFDSLHNSGLLDKLLAQGKEYLFVSNIDNLGATVDLNI---LNHVINNNIEYLMEV-TD 274 (498)
T ss_pred CCCcccCCCCcccccCCCCccHHHHHhccchHHHHHhCCceEEEEeccccccceeeHHH---HHHHhcCCCceEEEe-cc
Confidence 4433 4456799999999999999999999999999999999999999999999988 678888999999996 78
Q ss_pred cCCCCcCceEEEEEecCCCccccceEEEEecccCcccCCCCCCCCCCccccccc-ceeeeeEeHHHHHhhhcccccCCcc
Q 003559 478 SSGATEGINVLIEKKNLDGKWAYGLSCIEYTEFDKFGITRGPFSSNGLQADFPA-NTNILYVDLASAELVGSSENERSLP 556 (811)
Q Consensus 478 K~~~~e~vGvL~~~r~~dGk~~~~~~vVEYsEl~~~~~~~~~~~dg~l~s~f~~-Ninn~~fsL~~L~~vl~~~~~~~Lp 556 (811)
|+.++.|+|+|+. .+|+ ++++||+|+|++.. +++...++|.. ||||+|++|+++++++++ ..-.|+
T Consensus 275 KT~aDvKgGtLi~---y~G~----lrlLEiaQVP~ehv-----~eFkS~kkFkifNTNNlWinLkavKrlve~-~~l~me 341 (498)
T KOG2638|consen 275 KTRADVKGGTLIQ---YEGK----LRLLEIAQVPKEHV-----DEFKSIKKFKIFNTNNLWINLKAVKKLVEE-NALNME 341 (498)
T ss_pred cchhhcccceEEe---ecCE----EEEEEeccCChhHh-----hhhccceeEEEeccCCeEEehHHHHHHhhc-Ccccce
Confidence 8889999999998 8999 99999999999973 46677788998 999999999999999986 445555
Q ss_pred ccccccCCCcceecCCCCccccCccccccchhhhhhhhccccccccccceeeecccceeeeeccCCCchhhhhccccCCC
Q 003559 557 GMVLNTKKPIVYMDNFGDTHSVPGGRLECTMQNIADNFLNTYSSRCYKGVEDDLDTFMVYNERRRVTSSAKKKRKRADMS 636 (811)
Q Consensus 557 ~hvan~KKkIpy~D~~g~~~~~~p~rLE~~Mqd~~~~F~~~y~~~~~k~~f~~~~R~~~FsPvKn~~~sa~k~~~~~~~~ 636 (811)
.|.|+| ++|. + ..++||||+.+++++.|++ +..+-+.++|| -|||+.. +.+-. .
T Consensus 342 -Ii~N~k----ti~~-~----~~viQleTa~GaaIk~F~n------a~gv~VpRsRF---lPVKt~s-DLlLv-~----- 395 (498)
T KOG2638|consen 342 -IIVNPK----TIDR-G----IEVIQLETAAGAAIKFFDN------AIGVNVPRSRF---LPVKTCS-DLLLV-M----- 395 (498)
T ss_pred -eecChh----hccC-C----ceEEEEhhhhhHHHHhCCC------ceeeecccccc---ccccccc-cceee-e-----
Confidence 445853 5553 2 2789999999999999984 33334455665 8999943 32100 0
Q ss_pred CCCChhhhHHHHHHHHHHHHHHCCc-ccCcccCCCcccccC-CCeeEEeCCCccccHHHHhhccCC-CCCCCCcEEEEEe
Q 003559 637 LHQTPDGSFLDILRNAYDILCQCHI-KLPEIEGNDKYIDDG-PPYLILLHPALGLLWEVTRQKFKG-GSVSKGSELQIEV 713 (811)
Q Consensus 637 ~~~sp~ta~~dl~~~~~~~L~~aG~-~vp~~~~~~~~~~~~-P~~~I~L~P~~~~~~~~~~~k~~~-gsi~~~S~L~VeG 713 (811)
.+||.. ..|- ++. ..+.+ |.++|.|++. +.++++|..||++ ++|.++++|+|.|
T Consensus 396 ---------S~Ly~l------d~Gsl~l~-------~~r~~~t~P~vkLg~~-F~kv~~f~~rfp~iP~ileLdhLtVsG 452 (498)
T KOG2638|consen 396 ---------SNLYDL------DNGSLTLS-------PSRFGPTPPLVKLGSE-FKKVEDFLGRFPGIPDILELDHLTVSG 452 (498)
T ss_pred ---------cceeec------cCCeEEec-------hhhcCCCCCeeecchh-hhHHHHHHhcCCCCCccceeceEEEec
Confidence 011110 1121 111 11222 3447999999 7888999999999 7999999999999
Q ss_pred ceEEeeceEEEEEEEEEeccCCCCccccCCCcc
Q 003559 714 AEFLWRNVQLDGSLIIVAENVMGSTRIADNGES 746 (811)
Q Consensus 714 ~~~f~~~v~ldGslvI~a~~~~g~~~~~~~g~~ 746 (811)
+++|++||.|.|+|+|.|+ .|..-..|+|..
T Consensus 453 dV~FGknV~LkGtViIia~--~~~~i~IP~gsV 483 (498)
T KOG2638|consen 453 DVWFGKNVSLKGTVIIIAN--EGDRIDIPDGSV 483 (498)
T ss_pred cEEeccceEEeeEEEEEec--CCCeeecCCCCe
Confidence 9999999999999999998 678777888873
No 11
>COG4284 UDP-glucose pyrophosphorylase [Carbohydrate transport and metabolism]
Probab=100.00 E-value=1.1e-61 Score=535.57 Aligned_cols=388 Identities=22% Similarity=0.247 Sum_probs=297.3
Q ss_pred cHHHHHHHHHHcCCccccccCccchhhhhhhhhHHHHHHHHHhhhhccccCCCccccccccchhhHHHHHHHHHHHHHHh
Q 003559 135 DQLFLIKCVIAAGQEHVLNLEPEYVESEARSDIKSALYALVEFIDRLDVNGRNSEAKDAVLEIEQVKDLNKLLKTLAEIE 214 (811)
Q Consensus 135 ~~~~l~~~L~~~gQeHll~~~~~w~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~~~~~~~~~Ll~qL~~ld 214 (811)
+.......|.+..|+|+|..|.. +++. +..+..+++..+|
T Consensus 14 ~f~~~~~~l~~~~~~h~l~~l~~-------------------------------------~s~~---~~~~~~~~~~~~d 53 (472)
T COG4284 14 KFNSDAVSLAASQQEHLLDKLKQ-------------------------------------SSEK---QALKSFEKLLLLD 53 (472)
T ss_pred hhhcchhhhhHHHHHHHHHHhhh-------------------------------------hchH---HHHhhhhhhhhhH
Confidence 45667788999999999999444 4442 5566677777777
Q ss_pred ccccCcchhHHHHHHHHHHHHccccccccccccccccccccccccccCCCCcccCCChHHHHHHHHHhhhc--cCcEEEE
Q 003559 215 QFYDCVGGIIGYQVEVLELLAQSKFERKTTKSQHVHESMECQFLEIHVPSGLDLSQNTEYAAQAALWGIEG--LPELGEI 292 (811)
Q Consensus 215 ~~y~~~ggl~~y~~~a~~ll~~s~~~~~~~~~~~~~~~~~~~~~~~~vP~g~~l~~~~~~~~~~e~~Gle~--l~kvavV 292 (811)
.+++ +++ +-++..+.. .. ..++.+..|.-......+... .+.||+.. ++|+|||
T Consensus 54 ~~f~-------l~~--~~ll~~s~~---s~----------~~~~ki~~~~~d~~~~~~~~~--~~~~~l~~~~~~klAvl 109 (472)
T COG4284 54 IFFF-------LFS--RYLLNTSKA---ST----------QEWDKIRPPNPDDVVDYEKKI--LEGWGLLKIKLGKLAVL 109 (472)
T ss_pred HHHH-------HHH--HHHhhcCcc---cc----------eeecccCCCChhhhccchhhc--cchhhhhhhhcCceEEE
Confidence 7542 222 223332211 10 123333334322221111111 12336666 6799999
Q ss_pred EecCCccccCCCCCCCCCceeeccccCCCCCcchHHHHHHHHHHHHHhHhhcCCcccceEEEecCCCCCchHHHHHHHHH
Q 003559 293 YPLGGSADRLGLVDHETGECLPAAMLPYCGRTLLEGLIRDLQAREFLYFKLYGKQCITPVAIMTSSAKNNHERITSLCER 372 (811)
Q Consensus 293 lLAGGlGTRLG~~~pKgg~~lpV~l~p~sgkTlLql~~e~I~~lq~La~~~~g~~~~IPl~IMTS~~~~Th~~T~~fle~ 372 (811)
+||||||||||+++||| +++|+ +|+||||+++|||+.++ .+|+ ++||||||||. |+++|..||+.
T Consensus 110 ~LaGGqGtrlG~~gPKg--l~~V~----~gks~~dl~~~qIk~ln----~~~~--~~vP~~iMtS~---nt~~t~s~f~~ 174 (472)
T COG4284 110 KLAGGQGTRLGCDGPKG--LFEVK----DGKSLFDLQAEQIKYLN----RQYN--VDVPLYIMTSL---NTEETDSYFKS 174 (472)
T ss_pred EecCCcccccccCCCce--eEEec----CCCcHHHHHHHHHHHHH----HHhC--CCCCEEEEecC---CcHHHHHHHhh
Confidence 99999999999999999 99999 99999999999999999 5677 89999999996 99999999999
Q ss_pred hCCCCCCCCceEEEecCCeeeEecCCCcccccCCCC-ccccCCCCcHHHHHHHhcCchHHHHHcCceEEEEEeCCCCccc
Q 003559 373 LRWFGRGQSSFQLFEQPLVPAVDAEDGQWLVMRPFA-PVCKPGGHGAIWKLAHDKGIFKWFHDNGRKGATVRQVSNVVAA 451 (811)
Q Consensus 373 n~yFGl~~~qV~~F~Q~~vP~l~~~dgki~l~~~~~-l~~~P~GhGdIy~aL~~sGlLd~l~~~Gikyi~v~~vDN~La~ 451 (811)
++|||+++++|.||+|+.+||+...+|++++.+.++ ++|+|+||||+|.+|+.||++++|.++|++|++|+||||+++.
T Consensus 175 ~~Y~~~~k~~I~fF~Q~~~P~~~~~sg~~~~~~~~~~~~~~P~GnG~lf~aL~~SG~le~l~~~G~e~lfV~nIDNL~~~ 254 (472)
T COG4284 175 NDYFGLDKEDIFFFVQSLFPRLLSDSGLPFLESDDSNLAWYPPGNGDLFKALKSSGILEKLIAQGIEYLFVSNIDNLGAT 254 (472)
T ss_pred hhhcCCCHHHeEEEecCCcceeecccCccccccCCcccccCCCCCccHHHHHHhcchHHHHHhcCceEEEEecccccccc
Confidence 999999999999999999996666899999986666 9999999999999999999999999999999999999994444
Q ss_pred ccHhHHHHhhhhhhcCCceeEEEeeecCCCCcCceEEEEEecCCCccccceEEEEecccCcccCCCCCCCCCCccccccc
Q 003559 452 TDLTLLALAGIGLHHGKKLGFASCKRSSGATEGINVLIEKKNLDGKWAYGLSCIEYTEFDKFGITRGPFSSNGLQADFPA 531 (811)
Q Consensus 452 vDP~~l~flG~~~~~~~~~~~~~vvRK~~~~e~vGvL~~~r~~dGk~~~~~~vVEYsEl~~~~~~~~~~~dg~l~s~f~~ 531 (811)
+||.| +|+++..+.++.+++ ++|+.|+|+||+|+. .||+ ++++||+|+|++. .++-..++.+. .|.+
T Consensus 255 vD~~~---lg~~~~~~~e~~~e~-t~Kt~a~ekvG~Lv~---~~g~----~rllEysev~~~~-~~~~~s~~~~~-~~n~ 321 (472)
T COG4284 255 VDLKF---LGFMAETNYEYLMET-TDKTKADEKVGILVT---YDGK----LRLLEYSEVPNEH-REEFTSDGKLK-YFNT 321 (472)
T ss_pred cCHHH---HHHHHhcCcceeEEE-eecccccccceEEEE---eCCc----eEEEEEecCChhH-hhhhcccccee-eecc
Confidence 59966 899999999999997 888889999999997 8999 9999999999986 33333444332 3445
Q ss_pred c-eeeeeEeHHHHHhhhcccccCCccccccccCCCcceecCC---CCccccCcccccc-chhhhhhhhccccccccccce
Q 003559 532 N-TNILYVDLASAELVGSSENERSLPGMVLNTKKPIVYMDNF---GDTHSVPGGRLEC-TMQNIADNFLNTYSSRCYKGV 606 (811)
Q Consensus 532 N-inn~~fsL~~L~~vl~~~~~~~Lp~hvan~KKkIpy~D~~---g~~~~~~p~rLE~-~Mqd~~~~F~~~y~~~~~k~~ 606 (811)
| |.+|++.+++|.+... -.||.|.++ ||||+.|.. .+..-+...++|. |+- +|+|. | ...+.++
T Consensus 322 Nni~l~~~~~~~l~~~~~----l~Lpi~~a~--Kki~~~~~~~~~~t~i~~~i~kfe~~FI~--fDlF~--~-~s~~~~~ 390 (472)
T COG4284 322 NNIWLHLFSVKFLKEAAY----LNLPIHKAI--KKIPQLDNIIQLTTAIGKNISKFENEFIP--FDLFL--Y-KSDENGG 390 (472)
T ss_pred ccceeehhHHHHHHhhhc----cCCcchhhh--cccCccccceeeccccccchhhccccccc--eeeeE--E-EecCCCc
Confidence 3 7777777777776553 479999999 999999821 1112245567884 431 67775 2 2236778
Q ss_pred eeecccceeeeeccCCCch
Q 003559 607 EDDLDTFMVYNERRRVTSS 625 (811)
Q Consensus 607 f~~~~R~~~FsPvKn~~~s 625 (811)
+..+||+-+|+|+||-.++
T Consensus 391 ~~~vpR~~~f~Plkn~~~~ 409 (472)
T COG4284 391 LLLVPRFGEFSPLKNLEGS 409 (472)
T ss_pred eEeccccCCCCchhhccCC
Confidence 8889999999999997766
No 12
>cd04180 UGPase_euk_like Eukaryotic UGPase-like includes UDPase and UDPGlcNAc pyrophosphorylase enzymes. This family includes UDP-Glucose Pyrophosphorylase (UDPase) and UDPGlcNAc pyrophosphorylase enzymes. The two enzymes share significant sequence and structure similarity. UDP-Glucose Pyrophosphorylase catalyzes a reversible production of UDP-Glucose and pyrophosphate (PPi) from Glucose-1-phosphate and UTP. UDP-glucose plays pivotal roles in galactose utilization, in glycogen synthesis, and in the synthesis of the carbohydrate moieties of glycolipids , glycoproteins , and proteoglycans . UDP-N-acetylglucosamine (UDPGlcNAc) pyrophosphorylase (UAP) (also named GlcNAc1P uridyltransferase), catalyzes the reversible conversion of UTP and GlcNAc1P from PPi and UDPGlcNAc, which is a key precursor of N- and O-linked glycosylations and is essential for the synthesis of chitin (a major component of the fungal cell wall) and of the glycosylphosphatidylinositol (GPI) linker anchoring a variety o
Probab=100.00 E-value=3e-57 Score=479.39 Aligned_cols=235 Identities=19% Similarity=0.196 Sum_probs=208.2
Q ss_pred EEEEEecCCccccCCCCCCCCCceeeccccCCCCCcchHHHHHHHHHHHHHhHhhcCCcccceEEEecCCCCCchHHHHH
Q 003559 289 LGEIYPLGGSADRLGLVDHETGECLPAAMLPYCGRTLLEGLIRDLQAREFLYFKLYGKQCITPVAIMTSSAKNNHERITS 368 (811)
Q Consensus 289 vavVlLAGGlGTRLG~~~pKgg~~lpV~l~p~sgkTlLql~~e~I~~lq~La~~~~g~~~~IPl~IMTS~~~~Th~~T~~ 368 (811)
+|+|+||||+|||||++.||+ ++||+++ +|+||||+++++|++++.++. .| +.|||+||||+ +||+.|++
T Consensus 1 va~viLaGG~GtRLg~~~PK~--~~~i~~~--~gk~~l~~~~~~i~~~~~~~~--~~--~~Ip~~imts~--~t~~~t~~ 70 (266)
T cd04180 1 VAVVLLAGGLGTRLGKDGPKS--STDVGLP--SGQCFLQLIGEKILTLQEIDL--YS--CKIPEQLMNSK--YTHEKTQC 70 (266)
T ss_pred CEEEEECCCCccccCCCCCce--eeeecCC--CCCcHHHHHHHHHHHHHHHhh--cC--CCCCEEEEcCc--hhHHHHHH
Confidence 589999999999999999999 9999987 999999999999999996552 24 78999999999 79999999
Q ss_pred HHHHhCCCCCCCCceEEEecCCeeeEecCCCcccccCCCCccccCCCCcHHHHHHHhcCchHHHHHcCceEEEEEeCCCC
Q 003559 369 LCERLRWFGRGQSSFQLFEQPLVPAVDAEDGQWLVMRPFAPVCKPGGHGAIWKLAHDKGIFKWFHDNGRKGATVRQVSNV 448 (811)
Q Consensus 369 fle~n~yFGl~~~qV~~F~Q~~vP~l~~~dgki~l~~~~~l~~~P~GhGdIy~aL~~sGlLd~l~~~Gikyi~v~~vDN~ 448 (811)
||++|+ +++++|++|+|+++||++ .+|.+.++++++++|+|+||||||.+|+.+|+|++|+++|++|++|+|+||+
T Consensus 71 ~l~~~~---~~~~~v~~f~Q~~~P~~~-~~~~~~~~~~~~~~~~P~GnGdi~~~L~~sglLd~l~~~G~~yi~v~~vDN~ 146 (266)
T cd04180 71 YFEKIN---QKNSYVITFMQGKLPLKN-DDDARDPHNKTKCHLFPCGHGDVVLALIHSGHLNKLLEKGYRYIHFIGVDNL 146 (266)
T ss_pred HHHHcC---CCCCceEEEEeCCceEEe-CCCCcccCCCCceeeccCCcHHHHHHHHHCChHHHHHHcCCEEEEEEccCcc
Confidence 999998 578999999999999999 5677778888999999999999999999999999999999999999999999
Q ss_pred cccc-cHhHHHHhhhhhhcCCceeEEEeeecCCCCcCceEEEEEecCC-CccccceEEEEecccCcccCCCC----CCCC
Q 003559 449 VAAT-DLTLLALAGIGLHHGKKLGFASCKRSSGATEGINVLIEKKNLD-GKWAYGLSCIEYTEFDKFGITRG----PFSS 522 (811)
Q Consensus 449 La~v-DP~~l~flG~~~~~~~~~~~~~vvRK~~~~e~vGvL~~~r~~d-Gk~~~~~~vVEYsEl~~~~~~~~----~~~d 522 (811)
|+++ ||.+ +|+++..+.++.+++ ++|+.++|++|++|. .+ |+ ++||||+|+|++..... +.++
T Consensus 147 la~v~DP~~---lG~~~~~~~~~~~kv-v~K~~~d~k~G~~~~---~~~g~----~~~vEyse~~~~~~~~~~~~~~~~~ 215 (266)
T cd04180 147 LVKVADPLF---IGIAIQNRKAINQKV-VPKTRNEESGGYRIA---NINGR----VQLLEYDQIKKLLKQKMVNNQIPKD 215 (266)
T ss_pred CccccCHHH---HHHHHHcCCCEEEEE-EECCCCCCeEEEEEE---ecCCC----EEEEEeccCCHHHHhccccccCcCC
Confidence 9999 9966 899999999999997 666789999999997 55 88 99999999999852221 1122
Q ss_pred CCcccccccceeeeeEeHHHHHhhhc
Q 003559 523 NGLQADFPANTNILYVDLASAELVGS 548 (811)
Q Consensus 523 g~l~s~f~~Ninn~~fsL~~L~~vl~ 548 (811)
.+.++.+++|||||||+|+||+++++
T Consensus 216 ~~~~~~~~~n~~~~~~~l~~l~~~~~ 241 (266)
T cd04180 216 IDDAPFFLFNTNNLINFLVEFKDRVD 241 (266)
T ss_pred CCceeeccceEEEEEEEHHHHHHHHH
Confidence 23344567799999999999999873
No 13
>COG1207 GlmU N-acetylglucosamine-1-phosphate uridyltransferase (contains nucleotidyltransferase and I-patch acetyltransferase domains) [Cell envelope biogenesis, outer membrane]
Probab=97.82 E-value=0.0027 Score=71.85 Aligned_cols=186 Identities=13% Similarity=0.104 Sum_probs=127.3
Q ss_pred cEEEEEecCCccccCCCCCCCCCceeeccccCCCCCcchHHHHHHHHHHHHHhHhhcCCcccceEEEecCCCCCchHHHH
Q 003559 288 ELGEIYPLGGSADRLGLVDHETGECLPAAMLPYCGRTLLEGLIRDLQAREFLYFKLYGKQCITPVAIMTSSAKNNHERIT 367 (811)
Q Consensus 288 kvavVlLAGGlGTRLG~~~pKgg~~lpV~l~p~sgkTlLql~~e~I~~lq~La~~~~g~~~~IPl~IMTS~~~~Th~~T~ 367 (811)
.+.+|+||-|+||||-++-||. +=|+ .||+.++..++.+..+. .=-+++..+. -.+..+
T Consensus 2 ~~~~vILAAGkGTRMkS~lPKV--LH~v-----aGkpMl~hVi~~a~~l~-----------~~~i~vVvGh---~ae~V~ 60 (460)
T COG1207 2 SLSAVILAAGKGTRMKSDLPKV--LHPV-----AGKPMLEHVIDAARALG-----------PDDIVVVVGH---GAEQVR 60 (460)
T ss_pred CceEEEEecCCCccccCCCccc--chhc-----cCccHHHHHHHHHhhcC-----------cceEEEEEcC---CHHHHH
Confidence 4678999999999999999998 7665 89999999999888764 1112333443 567777
Q ss_pred HHHHHhCCCCCCCCceEEEecCCeeeEecCCCcccccCCCCccccCCCCcHHHHHHHhcCchHHHHHcCce-EEEEEeCC
Q 003559 368 SLCERLRWFGRGQSSFQLFEQPLVPAVDAEDGQWLVMRPFAPVCKPGGHGAIWKLAHDKGIFKWFHDNGRK-GATVRQVS 446 (811)
Q Consensus 368 ~fle~n~yFGl~~~qV~~F~Q~~vP~l~~~dgki~l~~~~~l~~~P~GhGdIy~aL~~sGlLd~l~~~Gik-yi~v~~vD 446 (811)
+-+.+.. ++.|+.|.. -+ -+|+-++. ....+..+.+ .+.|.+-|
T Consensus 61 ~~~~~~~-------~v~~v~Q~e--ql--GTgHAV~~------------------------a~~~l~~~~~g~vLVl~GD 105 (460)
T COG1207 61 EALAERD-------DVEFVLQEE--QL--GTGHAVLQ------------------------ALPALADDYDGDVLVLYGD 105 (460)
T ss_pred HHhcccc-------CceEEEecc--cC--ChHHHHHh------------------------hhhhhhcCCCCcEEEEeCC
Confidence 7776532 577888876 11 23332221 1233444555 78899999
Q ss_pred CCcccccHhHHHHhhhhhhcCCceeEEEeeecCCCCcCceEEEEEecCCCccccceEEEEecccCcccCCCCCCCCCCcc
Q 003559 447 NVVAATDLTLLALAGIGLHHGKKLGFASCKRSSGATEGINVLIEKKNLDGKWAYGLSCIEYTEFDKFGITRGPFSSNGLQ 526 (811)
Q Consensus 447 N~La~vDP~~l~flG~~~~~~~~~~~~~vvRK~~~~e~vGvL~~~r~~dGk~~~~~~vVEYsEl~~~~~~~~~~~dg~l~ 526 (811)
=+|...+. +-.++......+++....+ .+-++| .+-|.+++ +.+|+ -..+||.-+.+++.. .
T Consensus 106 ~PLit~~T-L~~L~~~~~~~~~~~tvLt-~~~~dP-~GYGRIvr--~~~g~---V~~IVE~KDA~~eek---------~- 167 (460)
T COG1207 106 VPLITAET-LEELLAAHPAHGAAATVLT-AELDDP-TGYGRIVR--DGNGE---VTAIVEEKDASEEEK---------Q- 167 (460)
T ss_pred cccCCHHH-HHHHHHhhhhcCCceEEEE-EEcCCC-CCcceEEE--cCCCc---EEEEEEcCCCCHHHh---------c-
Confidence 99998753 3246777777778887776 444444 35678876 35666 367999888877741 1
Q ss_pred cccc-cceeeeeEeHHHHHhhhcc
Q 003559 527 ADFP-ANTNILYVDLASAELVGSS 549 (811)
Q Consensus 527 s~f~-~Ninn~~fsL~~L~~vl~~ 549 (811)
-. .|+-.+.|+-..|.+.|.+
T Consensus 168 --I~eiNtGiy~f~~~~L~~~L~~ 189 (460)
T COG1207 168 --IKEINTGIYAFDGAALLRALPK 189 (460)
T ss_pred --CcEEeeeEEEEcHHHHHHHHHH
Confidence 23 3999999999999998864
No 14
>PRK05293 glgC glucose-1-phosphate adenylyltransferase; Provisional
Probab=97.60 E-value=0.0032 Score=70.07 Aligned_cols=196 Identities=11% Similarity=0.100 Sum_probs=115.1
Q ss_pred CcEEEEEecCCccccCCC---CCCCCCceeeccccCCCCC-cchHHHHHHHHHHHHHhHhhcCCcccceEEEecCCCCCc
Q 003559 287 PELGEIYPLGGSADRLGL---VDHETGECLPAAMLPYCGR-TLLEGLIRDLQAREFLYFKLYGKQCITPVAIMTSSAKNN 362 (811)
Q Consensus 287 ~kvavVlLAGGlGTRLG~---~~pKgg~~lpV~l~p~sgk-TlLql~~e~I~~lq~La~~~~g~~~~IPl~IMTS~~~~T 362 (811)
+++-.|+||||.||||.- +.||. ++|+ .|+ +++|++++++... | .--++|.|.. .
T Consensus 2 ~~m~avILAaG~GtRl~plT~~~PK~--llpv-----~gk~pli~~~l~~l~~~--------G---i~~i~iv~~~---~ 60 (380)
T PRK05293 2 KEMLAMILAGGQGTRLGKLTKNIAKP--AVPF-----GGKYRIIDFTLSNCANS--------G---IDTVGVLTQY---Q 60 (380)
T ss_pred CcEEEEEECCCCCcccchhhcCCccc--eeee-----CCceeehhHHHHHHHhC--------C---CCEEEEEecC---C
Confidence 357789999999999996 78999 9987 578 7999999988653 4 2246788876 7
Q ss_pred hHHHHHHHHHhCCCCCCCCc--eEEEecCCeeeEecCCCcccccCCCCccccCCCCcH-HHHHHHhcCchHHHHHcCceE
Q 003559 363 HERITSLCERLRWFGRGQSS--FQLFEQPLVPAVDAEDGQWLVMRPFAPVCKPGGHGA-IWKLAHDKGIFKWFHDNGRKG 439 (811)
Q Consensus 363 h~~T~~fle~n~yFGl~~~q--V~~F~Q~~vP~l~~~dgki~l~~~~~l~~~P~GhGd-Iy~aL~~sGlLd~l~~~Giky 439 (811)
.+...++|.+...|+++..+ +.+ .| |... . .-...|-|.|+ ++.++. .+....-++
T Consensus 61 ~~~i~~~~~~~~~~~~~~~~~~~~i-~~---~~~~-~----------~~~~~~~Gta~al~~a~~------~l~~~~~~~ 119 (380)
T PRK05293 61 PLELNNHIGIGSPWDLDRINGGVTI-LP---PYSE-S----------EGGKWYKGTAHAIYQNID------YIDQYDPEY 119 (380)
T ss_pred HHHHHHHHhCCCcccccCCCCCEEE-eC---Cccc-C----------CCCcccCCcHHHHHHHHH------HHHhCCCCE
Confidence 88899999876666664321 211 11 0010 0 00012346544 343332 232222368
Q ss_pred EEEEeCCCCcccccHhHHHHhhhhhhcCCceeEEEeeecC-CCCcCceEEEEEecCCCccccceEEEEecccCcccCCCC
Q 003559 440 ATVRQVSNVVAATDLTLLALAGIGLHHGKKLGFASCKRSS-GATEGINVLIEKKNLDGKWAYGLSCIEYTEFDKFGITRG 518 (811)
Q Consensus 440 i~v~~vDN~La~vDP~~l~flG~~~~~~~~~~~~~vvRK~-~~~e~vGvL~~~r~~dGk~~~~~~vVEYsEl~~~~~~~~ 518 (811)
+.|.+.|++ ...| +..++-.+...++++.+.+ .+.+ ....+-|++.. ..+|+ +.++.|-|...
T Consensus 120 ~lV~~gD~l-~~~d--~~~ll~~h~~~~~~~tl~~-~~~~~~~~~~yG~v~~--d~~g~------V~~~~eKp~~~---- 183 (380)
T PRK05293 120 VLILSGDHI-YKMD--YDKMLDYHKEKEADVTIAV-IEVPWEEASRFGIMNT--DENMR------IVEFEEKPKNP---- 183 (380)
T ss_pred EEEecCCEE-EcCC--HHHHHHHHHhcCCCEEEEE-EEcchhhccccCEEEE--CCCCc------EEEEEeCCCCC----
Confidence 889999984 3333 3244555555566654443 2221 12335677753 23444 45555433221
Q ss_pred CCCCCCcccccccceeeeeEeHHHHHhhhc
Q 003559 519 PFSSNGLQADFPANTNILYVDLASAELVGS 548 (811)
Q Consensus 519 ~~~dg~l~s~f~~Ninn~~fsL~~L~~vl~ 548 (811)
. . ...|+..++|+-+.+.+.+.
T Consensus 184 ---~-~----~~~~~Giyi~~~~~l~~~l~ 205 (380)
T PRK05293 184 ---K-S----NLASMGIYIFNWKRLKEYLI 205 (380)
T ss_pred ---C-c----ceeeeEEEEEcHHHHHHHHH
Confidence 0 0 12499999999988877664
No 15
>PRK00844 glgC glucose-1-phosphate adenylyltransferase; Provisional
Probab=97.46 E-value=0.0074 Score=68.31 Aligned_cols=206 Identities=14% Similarity=0.116 Sum_probs=116.3
Q ss_pred ccCcEEEEEecCCccccCC---CCCCCCCceeeccccCCCCC-cchHHHHHHHHHHHHHhHhhcCCcccceEEEecCCCC
Q 003559 285 GLPELGEIYPLGGSADRLG---LVDHETGECLPAAMLPYCGR-TLLEGLIRDLQAREFLYFKLYGKQCITPVAIMTSSAK 360 (811)
Q Consensus 285 ~l~kvavVlLAGGlGTRLG---~~~pKgg~~lpV~l~p~sgk-TlLql~~e~I~~lq~La~~~~g~~~~IPl~IMTS~~~ 360 (811)
+..++..|+||||.||||. ...||. ++|+ .|+ +++++.++.+... | .--++|.|..
T Consensus 2 ~~~~~~avILAaG~GtRl~PLT~~~PK~--llPv-----~gk~plI~~~L~~l~~~--------G---i~~i~iv~~~-- 61 (407)
T PRK00844 2 AMPKVLAIVLAGGEGKRLMPLTADRAKP--AVPF-----GGSYRLIDFVLSNLVNS--------G---YLRIYVLTQY-- 61 (407)
T ss_pred CCCceEEEEECCCCCCccchhhcCCccc--ceee-----CCcceEhHHHHHHHHHC--------C---CCEEEEEecc--
Confidence 3457889999999999999 899999 9998 477 8999998887653 3 2345778876
Q ss_pred CchHHHHHHHHHhCCCCCCCCceEEEecCCeeeEecCCCcccccCCCCccccCCCCcHHHHHHHhcCchHHHHHcCceEE
Q 003559 361 NNHERITSLCERLRWFGRGQSSFQLFEQPLVPAVDAEDGQWLVMRPFAPVCKPGGHGAIWKLAHDKGIFKWFHDNGRKGA 440 (811)
Q Consensus 361 ~Th~~T~~fle~n~yFGl~~~qV~~F~Q~~vP~l~~~dgki~l~~~~~l~~~P~GhGdIy~aL~~sGlLd~l~~~Gikyi 440 (811)
..+...++|.+. +.+....+.++.. .|.-. . .-...|-|-|+-.... ++.+....-+++
T Consensus 62 -~~~~i~~~~~~~--~~~~~~~~~~~~~--~~~~~-~----------~~~~~~lGta~al~~a-----~~~i~~~~~~~~ 120 (407)
T PRK00844 62 -KSHSLDRHISQT--WRLSGLLGNYITP--VPAQQ-R----------LGKRWYLGSADAIYQS-----LNLIEDEDPDYV 120 (407)
T ss_pred -CHHHHHHHHHhC--cCccccCCCeEEE--CCccc-C----------CCCCcccCCHHHHHHH-----HHHHHhcCCCEE
Confidence 788899999742 2221111111110 00000 0 0011245666543322 223434344788
Q ss_pred EEEeCCCCcccccHhHHHHhhhhhhcCCceeEEEeeecC-CCCcCceEEEEEecCCCccccceEEEEecccCcccCCCCC
Q 003559 441 TVRQVSNVVAATDLTLLALAGIGLHHGKKLGFASCKRSS-GATEGINVLIEKKNLDGKWAYGLSCIEYTEFDKFGITRGP 519 (811)
Q Consensus 441 ~v~~vDN~La~vDP~~l~flG~~~~~~~~~~~~~vvRK~-~~~e~vGvL~~~r~~dGk~~~~~~vVEYsEl~~~~~~~~~ 519 (811)
.|.+-|++. ..|. -.++-++...++++.+.+ .+.+ .....-|++.. ..+|+ +.++.|=|... ....
T Consensus 121 lv~~gD~v~-~~dl--~~l~~~h~~~~~~~ti~~-~~~~~~~~~~~Gvv~~--d~~g~------v~~~~eKp~~~-~~~~ 187 (407)
T PRK00844 121 VVFGADHVY-RMDP--RQMVDFHIESGAGVTVAA-IRVPREEASAFGVIEV--DPDGR------IRGFLEKPADP-PGLP 187 (407)
T ss_pred EEecCCEEE-cCCH--HHHHHHHHhcCCcEEEEE-EecchHHcccCCEEEE--CCCCC------EEEEEECCCCc-cccc
Confidence 899999853 3432 234555556666655554 2221 12234677754 23454 44444433321 0000
Q ss_pred CCCCCcccccccceeeeeEeHHHHHhhhc
Q 003559 520 FSSNGLQADFPANTNILYVDLASAELVGS 548 (811)
Q Consensus 520 ~~dg~l~s~f~~Ninn~~fsL~~L~~vl~ 548 (811)
...+ ..-.|+..+.|+-+.|.+.+.
T Consensus 188 ~~~~----~~~~~~Giyi~~~~~l~~~l~ 212 (407)
T PRK00844 188 DDPD----EALASMGNYVFTTDALVDALR 212 (407)
T ss_pred CCCC----CcEEEeEEEEEeHHHHHHHHH
Confidence 0101 123599999999999877664
No 16
>cd06915 NTP_transferase_WcbM_like WcbM_like is a subfamily of nucleotidyl transferases. WcbM protein of Burkholderia mallei is involved in the biosynthesis, export or translocation of capsule. It is a subfamily of nucleotidyl transferases that transfer nucleotides onto phosphosugars.
Probab=97.45 E-value=0.0068 Score=61.29 Aligned_cols=176 Identities=20% Similarity=0.156 Sum_probs=101.1
Q ss_pred EEEecCCccccCCC---CCCCCCceeeccccCCCCCcchHHHHHHHHHHHHHhHhhcCCcccceEEEecCCCCCchHHHH
Q 003559 291 EIYPLGGSADRLGL---VDHETGECLPAAMLPYCGRTLLEGLIRDLQAREFLYFKLYGKQCITPVAIMTSSAKNNHERIT 367 (811)
Q Consensus 291 vVlLAGGlGTRLG~---~~pKgg~~lpV~l~p~sgkTlLql~~e~I~~lq~La~~~~g~~~~IPl~IMTS~~~~Th~~T~ 367 (811)
.|+||||.|+|||- ..||. ++|+ .|+++++..++.+... | . -.++|.|+. ..+.+.
T Consensus 1 aiIlaaG~g~R~~~~t~~~pK~--ll~i-----~g~pli~~~l~~l~~~--------g--~-~~v~vv~~~---~~~~i~ 59 (223)
T cd06915 1 AVILAGGLGTRLRSVVKDLPKP--LAPV-----AGRPFLEYLLEYLARQ--------G--I-SRIVLSVGY---LAEQIE 59 (223)
T ss_pred CEEecCCcccccCcccCCCCcc--ccEE-----CCcchHHHHHHHHHHC--------C--C-CEEEEEccc---CHHHHH
Confidence 37899999999974 57999 9887 5889999998887642 3 1 146677765 567788
Q ss_pred HHHHHhCCCCCCCCceEEEecCCeeeEecCCCcccccCCCCccccCCCCcH-HHHHHHhcCchHHHHHcCceEEEEEeCC
Q 003559 368 SLCERLRWFGRGQSSFQLFEQPLVPAVDAEDGQWLVMRPFAPVCKPGGHGA-IWKLAHDKGIFKWFHDNGRKGATVRQVS 446 (811)
Q Consensus 368 ~fle~n~yFGl~~~qV~~F~Q~~vP~l~~~dgki~l~~~~~l~~~P~GhGd-Iy~aL~~sGlLd~l~~~Gikyi~v~~vD 446 (811)
+++.....+|. .+.+ .. ...+-|.++ ++.++.. + +-+++.+.+.|
T Consensus 60 ~~~~~~~~~~~---~~~~--------~~--------------~~~~~G~~~~l~~a~~~------~---~~~~~lv~~~D 105 (223)
T cd06915 60 EYFGDGYRGGI---RIYY--------VI--------------EPEPLGTGGAIKNALPK------L---PEDQFLVLNGD 105 (223)
T ss_pred HHHcCccccCc---eEEE--------EE--------------CCCCCcchHHHHHHHhh------c---CCCCEEEEECC
Confidence 88775332332 1111 11 012455554 4444421 2 23678888899
Q ss_pred CCcccccHhHHHHhhhhhhcCCceeEEEeeecCCCCcCceEEEEEecCCCccccceEEEEecccCcccCCCCCCCCCCcc
Q 003559 447 NVVAATDLTLLALAGIGLHHGKKLGFASCKRSSGATEGINVLIEKKNLDGKWAYGLSCIEYTEFDKFGITRGPFSSNGLQ 526 (811)
Q Consensus 447 N~La~vDP~~l~flG~~~~~~~~~~~~~vvRK~~~~e~vGvL~~~r~~dGk~~~~~~vVEYsEl~~~~~~~~~~~dg~l~ 526 (811)
++. ..| +..++-.+...+.++.+.+ .+.... ..-|++.. ..+|+ ++++.+=+.. +.
T Consensus 106 ~~~-~~~--~~~~l~~~~~~~~~~~~~~-~~~~~~-~~~~~v~~--d~~~~------v~~~~ek~~~--------~~--- 161 (223)
T cd06915 106 TYF-DVD--LLALLAALRASGADATMAL-RRVPDA-SRYGNVTV--DGDGR------VIAFVEKGPG--------AA--- 161 (223)
T ss_pred ccc-CCC--HHHHHHHHHhCCCcEEEEE-EECCCC-CcceeEEE--CCCCe------EEEEEeCCCC--------CC---
Confidence 865 233 3234444444556665554 343222 33455432 13444 4455542221 00
Q ss_pred cccccceeeeeEeHHHHHhh
Q 003559 527 ADFPANTNILYVDLASAELV 546 (811)
Q Consensus 527 s~f~~Ninn~~fsL~~L~~v 546 (811)
.+..|+...+|+-++++.+
T Consensus 162 -~~~~~~Giy~~~~~~l~~~ 180 (223)
T cd06915 162 -PGLINGGVYLLRKEILAEI 180 (223)
T ss_pred -CCcEEEEEEEECHHHHhhC
Confidence 1334899999999988664
No 17
>PRK14352 glmU bifunctional N-acetylglucosamine-1-phosphate uridyltransferase/glucosamine-1-phosphate acetyltransferase; Provisional
Probab=97.42 E-value=0.005 Score=71.08 Aligned_cols=186 Identities=13% Similarity=0.141 Sum_probs=107.4
Q ss_pred cEEEEEecCCccccCCCCCCCCCceeeccccCCCCCcchHHHHHHHHHHHHHhHhhcCCcccceEEEecCCCCCchHHHH
Q 003559 288 ELGEIYPLGGSADRLGLVDHETGECLPAAMLPYCGRTLLEGLIRDLQAREFLYFKLYGKQCITPVAIMTSSAKNNHERIT 367 (811)
Q Consensus 288 kvavVlLAGGlGTRLG~~~pKgg~~lpV~l~p~sgkTlLql~~e~I~~lq~La~~~~g~~~~IPl~IMTS~~~~Th~~T~ 367 (811)
.++.|+||||.||||+...||. ++|+ .|+++++..++++.+. | .-.++|.++. ..+.+.
T Consensus 4 ~~~avILAaG~gtRm~~~~pK~--llpi-----~gkpli~~~l~~l~~~--------g---~~~iivvv~~---~~~~i~ 62 (482)
T PRK14352 4 PTAVIVLAAGAGTRMRSDTPKV--LHTL-----AGRSMLGHVLHAAAGL--------A---PQHLVVVVGH---DRERVA 62 (482)
T ss_pred CceEEEEcCCCCCcCCCCCCce--ecee-----CCccHHHHHHHHHHhc--------C---CCcEEEEECC---CHHHHH
Confidence 5678999999999999888999 8887 6899999999988653 2 3367778876 456677
Q ss_pred HHHHHhCCCCCCCCceEEEecCCeeeEecCCCcccccCCCCccccCCCCc-HHHHHHHhcCchHHHHHcCceEEEEEeCC
Q 003559 368 SLCERLRWFGRGQSSFQLFEQPLVPAVDAEDGQWLVMRPFAPVCKPGGHG-AIWKLAHDKGIFKWFHDNGRKGATVRQVS 446 (811)
Q Consensus 368 ~fle~n~yFGl~~~qV~~F~Q~~vP~l~~~dgki~l~~~~~l~~~P~GhG-dIy~aL~~sGlLd~l~~~Gikyi~v~~vD 446 (811)
++++... ..+.+..| ..|.|-| .++.++. .+....-+++.|.+.|
T Consensus 63 ~~~~~~~------~~~~~~~~----------------------~~~~Gt~~si~~al~------~l~~~~~~~vlV~~gD 108 (482)
T PRK14352 63 PAVAELA------PEVDIAVQ----------------------DEQPGTGHAVQCALE------ALPADFDGTVVVTAGD 108 (482)
T ss_pred HHhhccC------CccEEEeC----------------------CCCCCcHHHHHHHHH------HhccCCCCeEEEEeCC
Confidence 7775421 01222222 1233433 3555553 2222234689999999
Q ss_pred CCcccccHhHHHHhhhhhhcCCceeEEEeeecCCCCcCceEEEEEecCCCccccceEEEEecccCcccCCCCCCCCCCcc
Q 003559 447 NVVAATDLTLLALAGIGLHHGKKLGFASCKRSSGATEGINVLIEKKNLDGKWAYGLSCIEYTEFDKFGITRGPFSSNGLQ 526 (811)
Q Consensus 447 N~La~vDP~~l~flG~~~~~~~~~~~~~vvRK~~~~e~vGvL~~~r~~dGk~~~~~~vVEYsEl~~~~~~~~~~~dg~l~ 526 (811)
+++...+ .+-.++-.....+..+.+.. .+ .....+-|.+.. ..+|+ ...++|....++. +..
T Consensus 109 ~P~~~~~-~l~~li~~~~~~~~~~~v~~-~~-~~~p~~yg~~~~--~~~g~---V~~~~EKp~~~~~----------~~~ 170 (482)
T PRK14352 109 VPLLDGE-TLADLVATHTAEGNAVTVLT-TT-LDDPTGYGRILR--DQDGE---VTAIVEQKDATPS----------QRA 170 (482)
T ss_pred eeccCHH-HHHHHHHHHHhcCCeEEEEE-ee-cCCCCCCCEEEE--CCCCC---EEEEEECCCCCHH----------Hhh
Confidence 9865432 12223433333344433332 22 222334566543 24555 1234443332211 111
Q ss_pred cccc-cceeeeeEeHHHHHhhhc
Q 003559 527 ADFP-ANTNILYVDLASAELVGS 548 (811)
Q Consensus 527 s~f~-~Ninn~~fsL~~L~~vl~ 548 (811)
.. .|+..++|+-+.|.+.+.
T Consensus 171 --~~~~~~Giy~f~~~~l~~~~~ 191 (482)
T PRK14352 171 --IREVNSGVYAFDAAVLRSALA 191 (482)
T ss_pred --cceEEEEEEEEEHHHHHHHHH
Confidence 12 489999999998877764
No 18
>cd02540 GT2_GlmU_N_bac N-terminal domain of bacterial GlmU. The N-terminal domain of N-Acetylglucosamine-1-phosphate uridyltransferase (GlmU). GlmU is an essential bacterial enzyme with both an acetyltransferase and an uridyltransferase activity which have been mapped to the C-terminal and N-terminal domains, respectively. This family represents the N-terminal uridyltransferase. GlmU performs the last two steps in the synthesis of UDP-N-acetylglucosamine (UDP-GlcNAc), which is an essential precursor in both the peptidoglycan and the lipopolysaccharide metabolic pathways in Gram-positive and Gram-negative bacteria, respectively.
Probab=97.36 E-value=0.0089 Score=61.15 Aligned_cols=181 Identities=14% Similarity=0.113 Sum_probs=102.2
Q ss_pred EEEecCCccccCCCCCCCCCceeeccccCCCCCcchHHHHHHHHHHHHHhHhhcCCcccceEEEecCCCCCchHHHHHHH
Q 003559 291 EIYPLGGSADRLGLVDHETGECLPAAMLPYCGRTLLEGLIRDLQAREFLYFKLYGKQCITPVAIMTSSAKNNHERITSLC 370 (811)
Q Consensus 291 vVlLAGGlGTRLG~~~pKgg~~lpV~l~p~sgkTlLql~~e~I~~lq~La~~~~g~~~~IPl~IMTS~~~~Th~~T~~fl 370 (811)
+|+||||.||||+...||. ++|+ .|+++++..++.+... | .-.++|.|+. .++...+++
T Consensus 1 aiIlaaG~g~R~~~~~pK~--l~~v-----~gkpli~~~i~~l~~~--------~---i~~i~iv~~~---~~~~i~~~~ 59 (229)
T cd02540 1 AVILAAGKGTRMKSDLPKV--LHPL-----AGKPMLEHVLDAARAL--------G---PDRIVVVVGH---GAEQVKKAL 59 (229)
T ss_pred CEEEeCCCCccCCCCCChh--ccee-----CCccHHHHHHHHHHhC--------C---CCeEEEEECC---CHHHHHHHh
Confidence 3789999999999778999 9887 5899999888877552 2 2356777776 467777776
Q ss_pred HHhCCCCCCCCceEEEecCCeeeEecCCCcccccCCCCccccCCCCcH-HHHHHHhcCchHHHHHcCceEEEEEeCCCCc
Q 003559 371 ERLRWFGRGQSSFQLFEQPLVPAVDAEDGQWLVMRPFAPVCKPGGHGA-IWKLAHDKGIFKWFHDNGRKGATVRQVSNVV 449 (811)
Q Consensus 371 e~n~yFGl~~~qV~~F~Q~~vP~l~~~dgki~l~~~~~l~~~P~GhGd-Iy~aL~~sGlLd~l~~~Gikyi~v~~vDN~L 449 (811)
.+ + .+.++.|. .+.|.++ ++.++. .+ +.+.+++.+.+.|+++
T Consensus 60 ~~---~-----~~~~~~~~----------------------~~~g~~~ai~~a~~------~~-~~~~~~vli~~~D~p~ 102 (229)
T cd02540 60 AN---P-----NVEFVLQE----------------------EQLGTGHAVKQALP------AL-KDFEGDVLVLYGDVPL 102 (229)
T ss_pred CC---C-----CcEEEECC----------------------CCCCCHHHHHHHHH------hh-ccCCCeEEEEeCCccc
Confidence 54 2 23333321 1234333 444332 22 2246789999999986
Q ss_pred ccccHhHHHHhhhhhhcCCceeEEEeeecCCCCcCceEEEEEecCCCccccceEEEEecccCcccCCCCCCCCCCccccc
Q 003559 450 AATDLTLLALAGIGLHHGKKLGFASCKRSSGATEGINVLIEKKNLDGKWAYGLSCIEYTEFDKFGITRGPFSSNGLQADF 529 (811)
Q Consensus 450 a~vDP~~l~flG~~~~~~~~~~~~~vvRK~~~~e~vGvL~~~r~~dGk~~~~~~vVEYsEl~~~~~~~~~~~dg~l~s~f 529 (811)
...+ .+-.++-.....+.++.+.+ .+..++ ..-|.+.. ..+|+ ++++.+=+... ..+.. .+
T Consensus 103 ~~~~-~i~~l~~~~~~~~~~~~~~~-~~~~~p-~~~~~~~~--~~~~~------v~~~~ek~~~~-------~~~~~-~~ 163 (229)
T cd02540 103 ITPE-TLQRLLEAHREAGADVTVLT-AELEDP-TGYGRIIR--DGNGK------VLRIVEEKDAT-------EEEKA-IR 163 (229)
T ss_pred cCHH-HHHHHHHHHHhcCCcEEEEE-EEcCCC-CCccEEEE--cCCCC------EEEEEECCCCC-------hHHHh-hc
Confidence 5432 12122333333344554443 333333 34555543 23455 33443322111 00000 02
Q ss_pred ccceeeeeEeHHHHHhhhc
Q 003559 530 PANTNILYVDLASAELVGS 548 (811)
Q Consensus 530 ~~Ninn~~fsL~~L~~vl~ 548 (811)
..|++..+|+-+.+.+.++
T Consensus 164 ~~~~giy~~~~~~~~~~l~ 182 (229)
T cd02540 164 EVNAGIYAFDAEFLFEALP 182 (229)
T ss_pred eEEeEEEEEEHHHHHHHHH
Confidence 3499999999887777664
No 19
>cd04197 eIF-2B_epsilon_N The N-terminal domain of epsilon subunit of the eIF-2B is a subfamily of glycosyltransferase 2. N-terminal domain of epsilon subunit of the eukaryotic translation initiation factor 2B (eIF-2B): eIF-2B is a guanine nucleotide-exchange factor which mediates the exchange of GDP (bound to initiation factor eIF2) for GTP, generating active eIF2.GTP complex. EIF2B is a complex multimeric protein consisting of five subunits named alpha, beta, gamma, delta and epsilon. Subunit epsilon shares sequence similarity with gamma subunit, and with a family of bifunctional nucleotide-binding enzymes such as ADP-glucose pyrophosphorylase, suggesting that epsilon subunit may play roles in nucleotide binding activity. In yeast, eIF2B gamma enhances the activity of eIF2B-epsilon leading to the idea that these subunits form the catalytic subcomplex.
Probab=97.36 E-value=0.0064 Score=62.56 Aligned_cols=124 Identities=16% Similarity=0.160 Sum_probs=79.3
Q ss_pred EEEecCCccccCC---CCCCCCCceeeccccCCCCCcchHHHHHHHHHHHHHhHhhcCCcccceEEEecCCCCCchHHHH
Q 003559 291 EIYPLGGSADRLG---LVDHETGECLPAAMLPYCGRTLLEGLIRDLQAREFLYFKLYGKQCITPVAIMTSSAKNNHERIT 367 (811)
Q Consensus 291 vVlLAGGlGTRLG---~~~pKgg~~lpV~l~p~sgkTlLql~~e~I~~lq~La~~~~g~~~~IPl~IMTS~~~~Th~~T~ 367 (811)
.|+||||.||||+ ...||. ++|+ .|++++++.++.+.+. | .--++|.|.. ..+.+.
T Consensus 3 aiIla~G~g~Rl~plt~~~pK~--llpi-----~g~piI~~~l~~l~~~--------G---i~~I~iv~~~---~~~~i~ 61 (217)
T cd04197 3 AVVLADSFNRRFRPLTKEKPRC--LLPL-----ANVPLIDYTLEFLALN--------G---VEEVFVFCCS---HSDQIK 61 (217)
T ss_pred EEEEcCCCcccccccccCCCce--eeEE-----CCEehHHHHHHHHHHC--------C---CCeEEEEeCC---CHHHHH
Confidence 5889999999998 588999 9988 5889999988887652 4 2246778876 678899
Q ss_pred HHHHHhCCCCCCCCceEEEecCCeeeEecCCCcccccCCCCccccCCCCcHHHHHHHhcCchHHHHHcCceEEEEEeCCC
Q 003559 368 SLCERLRWFGRGQSSFQLFEQPLVPAVDAEDGQWLVMRPFAPVCKPGGHGAIWKLAHDKGIFKWFHDNGRKGATVRQVSN 447 (811)
Q Consensus 368 ~fle~n~yFGl~~~qV~~F~Q~~vP~l~~~dgki~l~~~~~l~~~P~GhGdIy~aL~~sGlLd~l~~~Gikyi~v~~vDN 447 (811)
++|++..++++... ...+..+. . ..+.|-|+..+.+...+.+ .+.+.+.+.|+
T Consensus 62 ~~l~~~~~~~~~~~------~~~i~~~~-~-------------~~~~~~~~al~~~~~~~~~-------~~~flv~~gD~ 114 (217)
T cd04197 62 EYIEKSKWSKPKSS------LMIVIIIM-S-------------EDCRSLGDALRDLDAKGLI-------RGDFILVSGDV 114 (217)
T ss_pred HHHhhccccccccC------cceEEEEe-C-------------CCcCccchHHHHHhhcccc-------CCCEEEEeCCe
Confidence 99998766654321 00111111 0 1234556666665544433 24566888887
Q ss_pred CcccccHhHHHHhhhhhh
Q 003559 448 VVAATDLTLLALAGIGLH 465 (811)
Q Consensus 448 ~La~vDP~~l~flG~~~~ 465 (811)
+. ..|. -.++.++..
T Consensus 115 i~-~~dl--~~~l~~h~~ 129 (217)
T cd04197 115 VS-NIDL--KEILEEHKE 129 (217)
T ss_pred ee-ccCH--HHHHHHHHH
Confidence 64 3443 244666655
No 20
>PRK14356 glmU bifunctional N-acetylglucosamine-1-phosphate uridyltransferase/glucosamine-1-phosphate acetyltransferase; Provisional
Probab=97.35 E-value=0.0043 Score=70.67 Aligned_cols=184 Identities=15% Similarity=0.129 Sum_probs=103.2
Q ss_pred cEEEEEecCCccccCCCCCCCCCceeeccccCCCCCcchHHHHHHHHHHHHHhHhhcCCcccceEEEecCCCCCchHHHH
Q 003559 288 ELGEIYPLGGSADRLGLVDHETGECLPAAMLPYCGRTLLEGLIRDLQAREFLYFKLYGKQCITPVAIMTSSAKNNHERIT 367 (811)
Q Consensus 288 kvavVlLAGGlGTRLG~~~pKgg~~lpV~l~p~sgkTlLql~~e~I~~lq~La~~~~g~~~~IPl~IMTS~~~~Th~~T~ 367 (811)
.+..|+||||.|||||...||. ++|+ .|++++++.++.+.+. + .-.++|.++. ..+...
T Consensus 5 ~~~aiILAaG~gtR~~~~~pK~--l~~i-----~gkpli~~~l~~l~~~--------~---~~~iivv~~~---~~~~i~ 63 (456)
T PRK14356 5 TTGALILAAGKGTRMHSDKPKV--LQTL-----LGEPMLRFVYRALRPL--------F---GDNVWTVVGH---RADMVR 63 (456)
T ss_pred ceeEEEEcCCCCccCCCCCCce--eccc-----CCCcHHHHHHHHHHhc--------C---CCcEEEEECC---CHHHHH
Confidence 5778999999999999889999 8887 6899999998877542 2 1246666776 445554
Q ss_pred HHHHHhCCCCCCCCceEEEecCCeeeEecCCCcccccCCCCccccCCCCc-HHHHHHHhcCchHHHHHcCceEEEEEeCC
Q 003559 368 SLCERLRWFGRGQSSFQLFEQPLVPAVDAEDGQWLVMRPFAPVCKPGGHG-AIWKLAHDKGIFKWFHDNGRKGATVRQVS 446 (811)
Q Consensus 368 ~fle~n~yFGl~~~qV~~F~Q~~vP~l~~~dgki~l~~~~~l~~~P~GhG-dIy~aL~~sGlLd~l~~~Gikyi~v~~vD 446 (811)
+++.+ .++.+..|+ .|.|-| .++.++ +.|.+.+.+++.+...|
T Consensus 64 ~~~~~--------~~~~~v~~~----------------------~~~Gt~~al~~a~------~~l~~~~~d~vlv~~gD 107 (456)
T PRK14356 64 AAFPD--------EDARFVLQE----------------------QQLGTGHALQCAW------PSLTAAGLDRVLVVNGD 107 (456)
T ss_pred Hhccc--------cCceEEEcC----------------------CCCCcHHHHHHHH------HHHhhcCCCcEEEEeCC
Confidence 44432 122221111 133433 344433 44544567899999999
Q ss_pred CCcccccHhHHHHhhhhhhcCCceeEEEeeecCCCCcCceEEEEEecCCCccccceEEEEecccCcccCCCCCCCCCCcc
Q 003559 447 NVVAATDLTLLALAGIGLHHGKKLGFASCKRSSGATEGINVLIEKKNLDGKWAYGLSCIEYTEFDKFGITRGPFSSNGLQ 526 (811)
Q Consensus 447 N~La~vDP~~l~flG~~~~~~~~~~~~~vvRK~~~~e~vGvL~~~r~~dGk~~~~~~vVEYsEl~~~~~~~~~~~dg~l~ 526 (811)
.++...+ .+-.++.. ..+.+..+.+ .+-..+ ..-|++.. .+|+ -..++|-..+++.. ... .
T Consensus 108 ~P~i~~~-~i~~li~~--~~~~~~~l~~-~~~~~~-~~~g~v~~---~~g~---V~~~~ek~~~~~~~----~~~--~-- 168 (456)
T PRK14356 108 TPLVTTD-TIDDFLKE--AAGADLAFMT-LTLPDP-GAYGRVVR---RNGH---VAAIVEAKDYDEAL----HGP--E-- 168 (456)
T ss_pred cccCCHH-HHHHHHHH--HhcCCEEEEE-EEcCCC-CCceEEEE---cCCe---EEEEEECCCCChHH----hhh--h--
Confidence 9876542 12122322 2244444443 332323 24566643 4665 12233322222110 000 0
Q ss_pred cccccceeeeeEeHHHHHhhhc
Q 003559 527 ADFPANTNILYVDLASAELVGS 548 (811)
Q Consensus 527 s~f~~Ninn~~fsL~~L~~vl~ 548 (811)
....|+..++|+-+++++++.
T Consensus 169 -~~~~~~GiY~f~~~~l~~ll~ 189 (456)
T PRK14356 169 -TGEVNAGIYYLRLDAVESLLP 189 (456)
T ss_pred -cCeEEEEEEEEEHHHHHHHHH
Confidence 012489999999998877664
No 21
>cd04189 G1P_TT_long G1P_TT_long represents the long form of glucose-1-phosphate thymidylyltransferase. This family is the long form of Glucose-1-phosphate thymidylyltransferase. Glucose-1-phosphate thymidylyltransferase catalyses the formation of dTDP-glucose, from dTTP and glucose 1-phosphate. It is the first enzyme in the biosynthesis of dTDP-L-rhamnose, a cell wall constituent and a feedback inhibitor of the enzyme.There are two forms of Glucose-1-phosphate thymidylyltransferase in bacteria and archeae; short form and long form. The long form, which has an extra 50 amino acids c-terminal, is found in many species for which it serves as a sugar-activating enzyme for antibiotic biosynthesis and or other, unknown pathways, and in which dTDP-L-rhamnose is not necessarily produced.The long from enzymes also have a left-handed parallel helix domain at the c-terminus, whereas, th eshort form enzymes do not have this domain. The homotetrameric, feedback inhibited short form is found in
Probab=97.33 E-value=0.0099 Score=61.29 Aligned_cols=68 Identities=24% Similarity=0.402 Sum_probs=52.3
Q ss_pred EEEEecCCccccCC---CCCCCCCceeeccccCCCCCcchHHHHHHHHHHHHHhHhhcCCcccceEEEecCCCCCchHHH
Q 003559 290 GEIYPLGGSADRLG---LVDHETGECLPAAMLPYCGRTLLEGLIRDLQAREFLYFKLYGKQCITPVAIMTSSAKNNHERI 366 (811)
Q Consensus 290 avVlLAGGlGTRLG---~~~pKgg~~lpV~l~p~sgkTlLql~~e~I~~lq~La~~~~g~~~~IPl~IMTS~~~~Th~~T 366 (811)
..|+||||.||||+ ...||. ++|+ .|+++++..++.+.+. | .-.++|.|+. ..+..
T Consensus 2 ~avIlAaG~g~Rl~plt~~~pK~--l~~i-----~g~~li~~~l~~l~~~--------~---~~~i~vv~~~---~~~~~ 60 (236)
T cd04189 2 KGLILAGGKGTRLRPLTYTRPKQ--LIPV-----AGKPIIQYAIEDLREA--------G---IEDIGIVVGP---TGEEI 60 (236)
T ss_pred eEEEECCCccccccccccCCCce--eeEE-----CCcchHHHHHHHHHHC--------C---CCEEEEEcCC---CHHHH
Confidence 46889999999997 578999 9987 5889999988887542 3 1256788887 77888
Q ss_pred HHHHHHhCCCCC
Q 003559 367 TSLCERLRWFGR 378 (811)
Q Consensus 367 ~~fle~n~yFGl 378 (811)
.+++++...+|+
T Consensus 61 ~~~~~~~~~~~~ 72 (236)
T cd04189 61 KEALGDGSRFGV 72 (236)
T ss_pred HHHhcchhhcCC
Confidence 888887555553
No 22
>cd04181 NTP_transferase NTP_transferases catalyze the transfer of nucleotides onto phosphosugars. Nucleotidyltransferases transfer nucleotides onto phosphosugars. The enzyme family includes Alpha-D-Glucose-1-Phosphate Cytidylyltransferase, Mannose-1-phosphate guanyltransferase, and Glucose-1-phosphate thymidylyltransferase. The products are activated sugars that are precursors for synthesis of lipopolysaccharide, glycolipids and polysaccharides.
Probab=97.33 E-value=0.012 Score=59.48 Aligned_cols=177 Identities=20% Similarity=0.213 Sum_probs=104.8
Q ss_pred EEecCCccccCC---CCCCCCCceeeccccCCCCCcchHHHHHHHHHHHHHhHhhcCCcccceEEEecCCCCCchHHHHH
Q 003559 292 IYPLGGSADRLG---LVDHETGECLPAAMLPYCGRTLLEGLIRDLQAREFLYFKLYGKQCITPVAIMTSSAKNNHERITS 368 (811)
Q Consensus 292 VlLAGGlGTRLG---~~~pKgg~~lpV~l~p~sgkTlLql~~e~I~~lq~La~~~~g~~~~IPl~IMTS~~~~Th~~T~~ 368 (811)
|+||||.||||+ ...||. ++|+ .|++++++.++.+... | .-.++|.|.. ..+.+.+
T Consensus 2 iIlaaG~g~R~~~~t~~~pK~--ll~v-----~g~pli~~~l~~l~~~--------g---~~~i~vv~~~---~~~~i~~ 60 (217)
T cd04181 2 VILAAGKGTRLRPLTDTRPKP--LLPI-----AGKPILEYIIERLARA--------G---IDEIILVVGY---LGEQIEE 60 (217)
T ss_pred EEecCCccccccccccCCCcc--ccEE-----CCeeHHHHHHHHHHHC--------C---CCEEEEEecc---CHHHHHH
Confidence 789999999998 468999 9887 5889999999987653 2 2345777776 4567777
Q ss_pred HHHHhCCCCCCCCceEEEecCCeeeEecCCCcccccCCCCccccCCCCcHHHHHHHhcCchHHHHHcCceEEEEEeCCCC
Q 003559 369 LCERLRWFGRGQSSFQLFEQPLVPAVDAEDGQWLVMRPFAPVCKPGGHGAIWKLAHDKGIFKWFHDNGRKGATVRQVSNV 448 (811)
Q Consensus 369 fle~n~yFGl~~~qV~~F~Q~~vP~l~~~dgki~l~~~~~l~~~P~GhGdIy~aL~~sGlLd~l~~~Gikyi~v~~vDN~ 448 (811)
++.+...+|+ .|.+..| ..|.|.|+-..... +.+ .-+++.|...|++
T Consensus 61 ~~~~~~~~~~---~i~~~~~----------------------~~~~g~~~al~~~~-----~~~---~~~~~lv~~~D~~ 107 (217)
T cd04181 61 YFGDGSKFGV---NIEYVVQ----------------------EEPLGTAGAVRNAE-----DFL---GDDDFLVVNGDVL 107 (217)
T ss_pred HHcChhhcCc---eEEEEeC----------------------CCCCccHHHHHHhh-----hhc---CCCCEEEEECCee
Confidence 7776443342 2222111 12355544333222 122 4578899999985
Q ss_pred cccccHhHHHHhhhhhhcCCceeEEEeeecCCCCcCceEEEEEecCCCccccceEEEEecccCcccCCCCCCCCCCcccc
Q 003559 449 VAATDLTLLALAGIGLHHGKKLGFASCKRSSGATEGINVLIEKKNLDGKWAYGLSCIEYTEFDKFGITRGPFSSNGLQAD 528 (811)
Q Consensus 449 La~vDP~~l~flG~~~~~~~~~~~~~vvRK~~~~e~vGvL~~~r~~dGk~~~~~~vVEYsEl~~~~~~~~~~~dg~l~s~ 528 (811)
. ..| +..++-.+...++++.+.+ .+.. ....-|++.. ..+|+ ++++.|=+... . .
T Consensus 108 ~-~~~--~~~~~~~~~~~~~~~~~~~-~~~~-~~~~~~~v~~--d~~~~------v~~~~ek~~~~-------~-----~ 162 (217)
T cd04181 108 T-DLD--LSELLRFHREKGADATIAV-KEVE-DPSRYGVVEL--DDDGR------VTRFVEKPTLP-------E-----S 162 (217)
T ss_pred c-CcC--HHHHHHHHHhcCCCEEEEE-EEcC-CCCcceEEEE--cCCCc------EEEEEECCCCC-------C-----C
Confidence 3 333 2244555556666666554 3322 3445677653 13344 55665533321 1 1
Q ss_pred cccceeeeeEeHHHHHhhhc
Q 003559 529 FPANTNILYVDLASAELVGS 548 (811)
Q Consensus 529 f~~Ninn~~fsL~~L~~vl~ 548 (811)
...|+..++|+-+.+ +.+.
T Consensus 163 ~~~~~Giy~~~~~~~-~~l~ 181 (217)
T cd04181 163 NLANAGIYIFEPEIL-DYIP 181 (217)
T ss_pred CEEEEEEEEECHHHH-Hhhh
Confidence 235999999998776 4443
No 23
>PRK02862 glgC glucose-1-phosphate adenylyltransferase; Provisional
Probab=97.31 E-value=0.011 Score=67.51 Aligned_cols=210 Identities=14% Similarity=0.106 Sum_probs=115.2
Q ss_pred cEEEEEecCCccccCC---CCCCCCCceeeccccCCCCC-cchHHHHHHHHHHHHHhHhhcCCcccceEEEecCCCCCch
Q 003559 288 ELGEIYPLGGSADRLG---LVDHETGECLPAAMLPYCGR-TLLEGLIRDLQAREFLYFKLYGKQCITPVAIMTSSAKNNH 363 (811)
Q Consensus 288 kvavVlLAGGlGTRLG---~~~pKgg~~lpV~l~p~sgk-TlLql~~e~I~~lq~La~~~~g~~~~IPl~IMTS~~~~Th 363 (811)
++..|+||||.||||. ...||- ++|+ .|+ +++++.++++... | .-.++|.|+. ..
T Consensus 3 ~~~AVILAaG~GtRL~PLT~~~PK~--Llpi-----~gk~plI~~~L~~l~~~--------G---i~~vivv~~~---~~ 61 (429)
T PRK02862 3 RVLAIILGGGAGTRLYPLTKLRAKP--AVPL-----AGKYRLIDIPISNCINS--------G---INKIYVLTQF---NS 61 (429)
T ss_pred cEEEEEECCCCCCcchhhhcCCcce--eeEE-----CCeeEEeHHHHHHHHHC--------C---CCEEEEEecC---CH
Confidence 6788999999999998 489999 9998 577 9999999877552 4 2357888886 78
Q ss_pred HHHHHHHHHhCCCCCCCCceEEEecCCeeeEecCCCcccccCCCCccccCCCCcHHHHHHHhcCchHHHHHcCceEEEEE
Q 003559 364 ERITSLCERLRWFGRGQSSFQLFEQPLVPAVDAEDGQWLVMRPFAPVCKPGGHGAIWKLAHDKGIFKWFHDNGRKGATVR 443 (811)
Q Consensus 364 ~~T~~fle~n~yFGl~~~qV~~F~Q~~vP~l~~~dgki~l~~~~~l~~~P~GhGdIy~aL~~sGlLd~l~~~Gikyi~v~ 443 (811)
+...++|.+..+|+..... .+..+... ....-...+-|.|+-..... +.+....-+++.|.
T Consensus 62 ~~i~~~l~~~~~~~~~~~g-------~~~i~~~~-------~~~~~~~~~lGTa~al~~a~-----~~l~~~~~~~~lVl 122 (429)
T PRK02862 62 ASLNRHISQTYNFDGFSGG-------FVEVLAAQ-------QTPENPSWFQGTADAVRKYL-----WHFQEWDVDEYLIL 122 (429)
T ss_pred HHHHHHHhcCcCccccCCC-------EEEEeCCc-------ccCCCCccccCcHHHHHHHH-----HHHHhcCCCEEEEe
Confidence 8899999864333211101 01111000 00000011247666443332 23333334688999
Q ss_pred eCCCCcccccHhHHHHhhhhhhcCCceeEEEeeecCCC-CcCceEEEEEecCCCccccceEEEEecccCcccCCC---CC
Q 003559 444 QVSNVVAATDLTLLALAGIGLHHGKKLGFASCKRSSGA-TEGINVLIEKKNLDGKWAYGLSCIEYTEFDKFGITR---GP 519 (811)
Q Consensus 444 ~vDN~La~vDP~~l~flG~~~~~~~~~~~~~vvRK~~~-~e~vGvL~~~r~~dGk~~~~~~vVEYsEl~~~~~~~---~~ 519 (811)
+-|++. ..|.. .++-++...++++.+.+ .+...+ ...-|++.. ..+|+ +.++.|-|.....+ .+
T Consensus 123 ~gD~l~-~~dl~--~ll~~h~~~~a~~tl~~-~~~~~~~~~~yG~i~~--d~~g~------V~~~~Ekp~~~~~~~~~~~ 190 (429)
T PRK02862 123 SGDQLY-RMDYR--LFVQHHRETGADITLAV-LPVDEKDASGFGLMKT--DDDGR------ITEFSEKPKGDELKAMAVD 190 (429)
T ss_pred cCCEEE-eCCHH--HHHHHHHHcCCCEEEEE-EecChhhcccceEEEE--CCCCc------EEEEEECCCccccchhccc
Confidence 999843 44432 34555556666665554 222211 224677754 23454 44444444321000 00
Q ss_pred C----CCC-Cc-ccccccceeeeeEeHHHHHhhhcc
Q 003559 520 F----SSN-GL-QADFPANTNILYVDLASAELVGSS 549 (811)
Q Consensus 520 ~----~dg-~l-~s~f~~Ninn~~fsL~~L~~vl~~ 549 (811)
. .+. .. ...+-.|+..+.|+-+.|.+.++.
T Consensus 191 ~s~~~~~~~~~~~~~~~~n~Giyi~~~~vl~~~l~~ 226 (429)
T PRK02862 191 TSRLGLSPEEAKGKPYLASMGIYVFSRDVLFDLLNK 226 (429)
T ss_pred ccccccccccCCCCceEEEEEEEEEcHHHHHHHHHH
Confidence 0 000 00 001234899999999999877653
No 24
>PRK05450 3-deoxy-manno-octulosonate cytidylyltransferase; Provisional
Probab=97.31 E-value=0.022 Score=59.22 Aligned_cols=188 Identities=13% Similarity=0.102 Sum_probs=102.9
Q ss_pred cEEEEEecCCccccCCCCCCCCCceeeccccCCCCCcchHHHHHHHHHHHHHhHhhcCCcccceEEEecCCCCCchHHHH
Q 003559 288 ELGEIYPLGGSADRLGLVDHETGECLPAAMLPYCGRTLLEGLIRDLQAREFLYFKLYGKQCITPVAIMTSSAKNNHERIT 367 (811)
Q Consensus 288 kvavVlLAGGlGTRLG~~~pKgg~~lpV~l~p~sgkTlLql~~e~I~~lq~La~~~~g~~~~IPl~IMTS~~~~Th~~T~ 367 (811)
+++.|+||||.++||+ +|. ++|+ .|+++++..++.+... | .-.++| .+. ++.+.
T Consensus 2 ~~~~iIlA~g~S~R~~---~K~--Ll~i-----~Gkpll~~~l~~l~~~--------~---i~~ivv-v~~----~~~i~ 55 (245)
T PRK05450 2 KFLIIIPARYASTRLP---GKP--LADI-----GGKPMIVRVYERASKA--------G---ADRVVV-ATD----DERIA 55 (245)
T ss_pred ceEEEEecCCCCCCCC---CCc--cccc-----CCcCHHHHHHHHHHhc--------C---CCeEEE-ECC----cHHHH
Confidence 5788999999999996 698 8876 6999999999988653 2 112333 332 35677
Q ss_pred HHHHHhCCCCCCCCceEEEecCCeeeEecCCCcccccCCCCccccCCCCcHHHHHHHhcCchHHHHHcCceEEEEEeCCC
Q 003559 368 SLCERLRWFGRGQSSFQLFEQPLVPAVDAEDGQWLVMRPFAPVCKPGGHGAIWKLAHDKGIFKWFHDNGRKGATVRQVSN 447 (811)
Q Consensus 368 ~fle~n~yFGl~~~qV~~F~Q~~vP~l~~~dgki~l~~~~~l~~~P~GhGdIy~aL~~sGlLd~l~~~Gikyi~v~~vDN 447 (811)
+++.+ +|. .+.+ . . ...+.|-+++..++..-+ ..+-.++.+.+.|+
T Consensus 56 ~~~~~---~~~---~v~~---------~-~------------~~~~~gt~~~~~~~~~~~------~~~~~~vlv~~~D~ 101 (245)
T PRK05450 56 DAVEA---FGG---EVVM---------T-S------------PDHPSGTDRIAEAAAKLG------LADDDIVVNVQGDE 101 (245)
T ss_pred HHHHH---cCC---EEEE---------C-C------------CcCCCchHHHHHHHHhcC------CCCCCEEEEecCCC
Confidence 77754 232 1211 0 0 012445555554433211 12346899999999
Q ss_pred CcccccHhHHHHhhhhhhcCCceeEEEeeecC-----CCCcCceEEEEEecCCCccccceEEEEecccCcccCCCCCCCC
Q 003559 448 VVAATDLTLLALAGIGLHHGKKLGFASCKRSS-----GATEGINVLIEKKNLDGKWAYGLSCIEYTEFDKFGITRGPFSS 522 (811)
Q Consensus 448 ~La~vDP~~l~flG~~~~~~~~~~~~~vvRK~-----~~~e~vGvL~~~r~~dGk~~~~~~vVEYsEl~~~~~~~~~~~d 522 (811)
++...+- +-.++-.....+.++.+.+ .+.. ...+.++++.. .+|+ +++..+-+... +.+..+
T Consensus 102 Pli~~~~-l~~li~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~v~~d---~~g~------v~~~~e~~~~~--~~~~~~ 168 (245)
T PRK05450 102 PLIPPEI-IDQVAEPLANPEADMATLA-VPIHDAEEAFNPNVVKVVLD---ADGR------ALYFSRAPIPY--GRDAFA 168 (245)
T ss_pred CCCCHHH-HHHHHHHHhcCCCCeEeee-eecCCHHHhcCcCCCEEEeC---CCCc------EEEecCCCCCC--CCCccc
Confidence 9876521 1123433333345555554 3321 12223566532 4555 55666655321 011111
Q ss_pred CCcccccccceeeeeEeHHHHHhhhc
Q 003559 523 NGLQADFPANTNILYVDLASAELVGS 548 (811)
Q Consensus 523 g~l~s~f~~Ninn~~fsL~~L~~vl~ 548 (811)
.+.....-.|+....|+-+.++.+.+
T Consensus 169 ~~~~~~~~~~~Giy~~~~~~l~~~~~ 194 (245)
T PRK05450 169 DSAPTPVYRHIGIYAYRRGFLRRFVS 194 (245)
T ss_pred cccCccccEEEEEEecCHHHHHHHHh
Confidence 11000123499999999888877654
No 25
>PRK14360 glmU bifunctional N-acetylglucosamine-1-phosphate uridyltransferase/glucosamine-1-phosphate acetyltransferase; Provisional
Probab=97.29 E-value=0.0087 Score=68.02 Aligned_cols=185 Identities=13% Similarity=0.087 Sum_probs=102.2
Q ss_pred EEEEEecCCccccCCCCCCCCCceeeccccCCCCCcchHHHHHHHHHHHHHhHhhcCCcccceEEEecCCCCCchHHHHH
Q 003559 289 LGEIYPLGGSADRLGLVDHETGECLPAAMLPYCGRTLLEGLIRDLQAREFLYFKLYGKQCITPVAIMTSSAKNNHERITS 368 (811)
Q Consensus 289 vavVlLAGGlGTRLG~~~pKgg~~lpV~l~p~sgkTlLql~~e~I~~lq~La~~~~g~~~~IPl~IMTS~~~~Th~~T~~ 368 (811)
+++|+||||.|||||...||. ++|+ .|+++++..++.+.+. | ....+|.+.. ..+...+
T Consensus 2 ~~~iIlAaG~gsR~~~~~pK~--ll~v-----~gkpli~~~l~~l~~~--------g---~~~iivvv~~---~~~~i~~ 60 (450)
T PRK14360 2 LAVAILAAGKGTRMKSSLPKV--LHPL-----GGKSLVERVLDSCEEL--------K---PDRRLVIVGH---QAEEVEQ 60 (450)
T ss_pred ceEEEEeCCCCccCCCCCChh--cCEE-----CChhHHHHHHHHHHhC--------C---CCeEEEEECC---CHHHHHH
Confidence 577999999999999888999 9887 6899999999887653 2 2355666665 3445666
Q ss_pred HHHHhCCCCCCCCceEEEecCCeeeEecCCCcccccCCCCccccCCCCcHHHHHHHhcCchHHHHHcCceEEEEEeCCCC
Q 003559 369 LCERLRWFGRGQSSFQLFEQPLVPAVDAEDGQWLVMRPFAPVCKPGGHGAIWKLAHDKGIFKWFHDNGRKGATVRQVSNV 448 (811)
Q Consensus 369 fle~n~yFGl~~~qV~~F~Q~~vP~l~~~dgki~l~~~~~l~~~P~GhGdIy~aL~~sGlLd~l~~~Gikyi~v~~vDN~ 448 (811)
+++++. .+.+..|. .+.|.++-+.... +.+. ..-.+++|...|.+
T Consensus 61 ~~~~~~-------~i~~v~~~----------------------~~~G~~~sv~~~~-----~~l~-~~~~~vlV~~~D~P 105 (450)
T PRK14360 61 SLAHLP-------GLEFVEQQ----------------------PQLGTGHAVQQLL-----PVLK-GFEGDLLVLNGDVP 105 (450)
T ss_pred HhcccC-------CeEEEEeC----------------------CcCCcHHHHHHHH-----HHhh-ccCCcEEEEeCCcc
Confidence 665321 22222211 1345444332221 2222 12246888999998
Q ss_pred cccccHhHHHHhhhhhhcCCceeEEEeeecCCCCcCceEEEEEecCCCccccceEEEEecccCcccCCCCCCCCCCcccc
Q 003559 449 VAATDLTLLALAGIGLHHGKKLGFASCKRSSGATEGINVLIEKKNLDGKWAYGLSCIEYTEFDKFGITRGPFSSNGLQAD 528 (811)
Q Consensus 449 La~vDP~~l~flG~~~~~~~~~~~~~vvRK~~~~e~vGvL~~~r~~dGk~~~~~~vVEYsEl~~~~~~~~~~~dg~l~s~ 528 (811)
+...+ .+-.++-.....++++.+.. .+...+. .-|.+.. ..+|+ +++..|=+... .. ...+
T Consensus 106 ~i~~~-~l~~ll~~~~~~~~~~~~~~-~~~~~~~-~~g~~~~--d~~g~------v~~~~ek~~~~-~~---~~~~---- 166 (450)
T PRK14360 106 LLRPE-TLEALLNTHRSSNADVTLLT-ARLPNPK-GYGRVFC--DGNNL------VEQIVEDRDCT-PA---QRQN---- 166 (450)
T ss_pred ccCHH-HHHHHHHHHHhcCCcEEEEE-EecCCCC-CccEEEE--CCCCC------EEEEEECCCCC-hh---HhcC----
Confidence 75531 12122333334455544432 3333332 3455532 24554 33443332221 00 0001
Q ss_pred cccceeeeeEeHHHHHhhhc
Q 003559 529 FPANTNILYVDLASAELVGS 548 (811)
Q Consensus 529 f~~Ninn~~fsL~~L~~vl~ 548 (811)
...|+..++|+-+.+.+.++
T Consensus 167 ~~~~~Giy~f~~~~l~~~~~ 186 (450)
T PRK14360 167 NRINAGIYCFNWPALAEVLP 186 (450)
T ss_pred cEEEEEEEEEEHHHHHHHHh
Confidence 22588899999988887764
No 26
>TIGR02092 glgD glucose-1-phosphate adenylyltransferase, GlgD subunit. This family is GlgD, an apparent regulatory protein that appears in an alpha2/beta2 heterotetramer with GlgC (glucose-1-phosphate adenylyltransferase, TIGR02091) in a subset of bacteria that use GlgC for glycogen biosynthesis.
Probab=97.28 E-value=0.004 Score=69.11 Aligned_cols=192 Identities=16% Similarity=0.097 Sum_probs=109.2
Q ss_pred cEEEEEecCCccccCCC---CCCCCCceeeccccCCCCC-cchHHHHHHHHHHHHHhHhhcCCcccceEEEecCCCCCch
Q 003559 288 ELGEIYPLGGSADRLGL---VDHETGECLPAAMLPYCGR-TLLEGLIRDLQAREFLYFKLYGKQCITPVAIMTSSAKNNH 363 (811)
Q Consensus 288 kvavVlLAGGlGTRLG~---~~pKgg~~lpV~l~p~sgk-TlLql~~e~I~~lq~La~~~~g~~~~IPl~IMTS~~~~Th 363 (811)
++..|+||||.||||.- +.||. |+|| .|| ++++++++.+.+. | .--++|.+.. -+
T Consensus 2 ~~~avila~g~gtRL~PLT~~~PKp--LlpV-----~gk~PlIe~~l~~L~~~--------G---i~~I~iv~~~---~~ 60 (369)
T TIGR02092 2 KMSAIINLTESSKNLSPLTKVRPLA--SLPF-----GGRYRLIDFPLSNMVNA--------G---IRNVFIFFKN---KE 60 (369)
T ss_pred cEEEEEECCCCCccccccccCCccc--cccc-----CCeeeEEEEEhhhhhcc--------C---CCEEEEEeCC---Cc
Confidence 46679999999999973 78998 8887 588 8999999888663 4 2356777776 44
Q ss_pred H-HHHHHHHHhCCCCCCCCce---EEEecCCeeeEecCCCcccccCCCCccccCCCCcHHHHHHHhcCchHHHHHcCceE
Q 003559 364 E-RITSLCERLRWFGRGQSSF---QLFEQPLVPAVDAEDGQWLVMRPFAPVCKPGGHGAIWKLAHDKGIFKWFHDNGRKG 439 (811)
Q Consensus 364 ~-~T~~fle~n~yFGl~~~qV---~~F~Q~~vP~l~~~dgki~l~~~~~l~~~P~GhGdIy~aL~~sGlLd~l~~~Giky 439 (811)
+ ..+++|.+...||++..+. .++.|+ ..|-|-|+.+...... +.+...+-+.
T Consensus 61 ~~~I~~~l~~~~~~~~~~~~~~~~~~~~~e---------------------~~~l~tg~~~a~~~a~---~~l~~~~~~~ 116 (369)
T TIGR02092 61 RQSLFDHLGSGREWDLHRKRDGLFVFPYND---------------------RDDLSEGGKRYFSQNL---EFLKRSTSEY 116 (369)
T ss_pred HHHHHHHHhCCCCCCcccccCcEEEEeccC---------------------CCCcccChHHHHHHHH---HHHHhCCCCE
Confidence 4 8999998766777643211 111111 1233334444332221 2222223368
Q ss_pred EEEEeCCCCcccccHhHHHHhhhhhhcCCceeEEEeeecC--CCCcCceEEEEEecCCCccccceEEEEecccCcccCCC
Q 003559 440 ATVRQVSNVVAATDLTLLALAGIGLHHGKKLGFASCKRSS--GATEGINVLIEKKNLDGKWAYGLSCIEYTEFDKFGITR 517 (811)
Q Consensus 440 i~v~~vDN~La~vDP~~l~flG~~~~~~~~~~~~~vvRK~--~~~e~vGvL~~~r~~dGk~~~~~~vVEYsEl~~~~~~~ 517 (811)
+.|.+.|+ +...| +..++-.+.+.++++.+.+ .+.. .+..-.|++.. ..+|+ + .++.+-++.
T Consensus 117 ~lvlnGD~-l~~~d--l~~ll~~h~~~~a~~tl~~-~~v~~~~~~~~g~vv~~--~~~g~----v--~~~~~~~~~---- 180 (369)
T TIGR02092 117 TVVLNSHM-VCNID--LKAVLKYHEETGKDITVVY-KKVKPADASEYDTILRF--DESGK----V--KSIGQNLNP---- 180 (369)
T ss_pred EEEECCCE-EEecC--HHHHHHHHHHcCCCEEEEE-EecCHHHccccCcEEEE--cCCCC----E--EeccccCCC----
Confidence 99999998 44444 3344555656666665543 3322 12333455543 13344 2 222111111
Q ss_pred CCCCCCCcccccccceeeeeEeHHHHHhhhc
Q 003559 518 GPFSSNGLQADFPANTNILYVDLASAELVGS 548 (811)
Q Consensus 518 ~~~~dg~l~s~f~~Ninn~~fsL~~L~~vl~ 548 (811)
+.. ...|+..++|+-+.+.+.++
T Consensus 181 ----~~~----~~~~~Giyi~~~~~l~~~l~ 203 (369)
T TIGR02092 181 ----EEE----ENISLDIYIVSTDLLIELLY 203 (369)
T ss_pred ----CCc----ceeeeeEEEEEHHHHHHHHH
Confidence 000 11378899999887766654
No 27
>PRK14359 glmU bifunctional N-acetylglucosamine-1-phosphate uridyltransferase/glucosamine-1-phosphate acetyltransferase; Provisional
Probab=97.25 E-value=0.014 Score=65.93 Aligned_cols=178 Identities=13% Similarity=0.112 Sum_probs=105.3
Q ss_pred EEEEEecCCccccCCCCCCCCCceeeccccCCCCCcchHHHHHHHHHHHHHhHhhcCCcccceEEEecCCCCCchHHHHH
Q 003559 289 LGEIYPLGGSADRLGLVDHETGECLPAAMLPYCGRTLLEGLIRDLQAREFLYFKLYGKQCITPVAIMTSSAKNNHERITS 368 (811)
Q Consensus 289 vavVlLAGGlGTRLG~~~pKgg~~lpV~l~p~sgkTlLql~~e~I~~lq~La~~~~g~~~~IPl~IMTS~~~~Th~~T~~ 368 (811)
+.+|+||||.||||+...||- ++|+ .|+++++..+++++.. . -..+|+++. ..+...+
T Consensus 3 ~~aiIlAaG~GtRl~~~~pK~--Llpi-----~gkPli~~~i~~l~~~--------~----~~i~Ivv~~---~~~~i~~ 60 (430)
T PRK14359 3 LSIIILAAGKGTRMKSSLPKV--LHTI-----CGKPMLFYILKEAFAI--------S----DDVHVVLHH---QKERIKE 60 (430)
T ss_pred ccEEEEcCCCCccCCCCCCce--eCEE-----CCccHHHHHHHHHHHc--------C----CcEEEEECC---CHHHHHH
Confidence 467899999999999989999 9887 6899999999888652 1 236777776 5777888
Q ss_pred HHHHhCCCCCCCCceEEEecCCeeeEecCCCcccccCCCCccccCCCCcHHHHHHHhcCchHHHHHcCceEEEEEeCCCC
Q 003559 369 LCERLRWFGRGQSSFQLFEQPLVPAVDAEDGQWLVMRPFAPVCKPGGHGAIWKLAHDKGIFKWFHDNGRKGATVRQVSNV 448 (811)
Q Consensus 369 fle~n~yFGl~~~qV~~F~Q~~vP~l~~~dgki~l~~~~~l~~~P~GhGdIy~aL~~sGlLd~l~~~Gikyi~v~~vDN~ 448 (811)
++.+. ++ ++.+..|. ...+.|.|+....+ ...-+++.+.+.|++
T Consensus 61 ~~~~~--~~----~v~~~~~~--------------------~~~~~gt~~al~~~----------~~~~d~vlv~~gD~p 104 (430)
T PRK14359 61 AVLEY--FP----GVIFHTQD--------------------LENYPGTGGALMGI----------EPKHERVLILNGDMP 104 (430)
T ss_pred HHHhc--CC----ceEEEEec--------------------CccCCCcHHHHhhc----------ccCCCeEEEEECCcc
Confidence 88753 21 34443332 11234555543321 112478999999997
Q ss_pred cccccHhHHHHhhhhhhcCCceeEEEeeecCCCCcCceEEEEEecCCCccccceEEEEecccCcccCCCCCCCCCCcccc
Q 003559 449 VAATDLTLLALAGIGLHHGKKLGFASCKRSSGATEGINVLIEKKNLDGKWAYGLSCIEYTEFDKFGITRGPFSSNGLQAD 528 (811)
Q Consensus 449 La~vDP~~l~flG~~~~~~~~~~~~~vvRK~~~~e~vGvL~~~r~~dGk~~~~~~vVEYsEl~~~~~~~~~~~dg~l~s~ 528 (811)
+... .. +--....++++.+.+ .+...+. .-|++.. .+|+ ...++|......+ + .. .
T Consensus 105 ~~~~--~~---l~~l~~~~~~~~v~~-~~~~~~~-~~g~v~~---d~g~---v~~i~e~~~~~~~--------~--~~-~ 160 (430)
T PRK14359 105 LVEK--DE---LEKLLENDADIVMSV-FHLADPK-GYGRVVI---ENGQ---VKKIVEQKDANEE--------E--LK-I 160 (430)
T ss_pred CCCH--HH---HHHHHhCCCCEEEEE-EEcCCCc-cCcEEEE---cCCe---EEEEEECCCCCcc--------c--cc-c
Confidence 7432 22 222334455544443 3333332 3566543 4565 1233443221111 0 00 1
Q ss_pred cccceeeeeEeHHHHHhhhc
Q 003559 529 FPANTNILYVDLASAELVGS 548 (811)
Q Consensus 529 f~~Ninn~~fsL~~L~~vl~ 548 (811)
+..|+..++|+-+++++.+.
T Consensus 161 ~~~~~Giyif~~~~l~~~~~ 180 (430)
T PRK14359 161 KSVNAGVYLFDRKLLEEYLP 180 (430)
T ss_pred eEEEeEEEEEEHHHHHHHHH
Confidence 33488999999999987664
No 28
>cd02509 GDP-M1P_Guanylyltransferase GDP-M1P_Guanylyltransferase catalyzes the formation of GDP-Mannose. GDP-mannose-1-phosphate guanylyltransferase, also called GDP-mannose pyrophosphorylase (GDP-MP), catalyzes the formation of GDP-Mannose from mannose-1-phosphate and GTP. Mannose is a key monosaccharide for glycosylation of proteins and lipids. GDP-Mannose is the activated donor for mannosylation of various biomolecules. This enzyme is known to be bifunctional, as both mannose-6-phosphate isomerase and mannose-1-phosphate guanylyltransferase. This CD covers the N-terminal GDP-mannose-1-phosphate guanylyltransferase domain, whereas the isomerase function is located at the C-terminal half. GDP-MP is a member of the nucleotidyltransferase family of enzymes.
Probab=97.23 E-value=0.0053 Score=66.04 Aligned_cols=195 Identities=12% Similarity=0.092 Sum_probs=110.1
Q ss_pred EEEecCCccccCC----CCCCCCCceeeccccCCCCCcchHHHHHHHHHHHHHhHhhcCCcccceEEEecCCCCCchHHH
Q 003559 291 EIYPLGGSADRLG----LVDHETGECLPAAMLPYCGRTLLEGLIRDLQAREFLYFKLYGKQCITPVAIMTSSAKNNHERI 366 (811)
Q Consensus 291 vVlLAGGlGTRLG----~~~pKgg~~lpV~l~p~sgkTlLql~~e~I~~lq~La~~~~g~~~~IPl~IMTS~~~~Th~~T 366 (811)
.|+||||.||||. ...||- ++|+. .++|++|..++++..+. + .-.++|.|+. .-++.+
T Consensus 3 ~vILAgG~GtRl~PlS~~~~PK~--ll~l~----g~~~li~~~l~~l~~~~-------~---~~~i~vvt~~--~~~~~v 64 (274)
T cd02509 3 PVILAGGSGTRLWPLSRESYPKQ--FLKLF----GDKSLLQQTLDRLKGLV-------P---PDRILVVTNE--EYRFLV 64 (274)
T ss_pred EEEEcccccccCCcCCCCCCCce--EeEcC----CCCcHHHHHHHHHhcCC-------C---CCcEEEEech--HHHHHH
Confidence 6889999999996 578999 99985 55999999999876541 1 2378888987 345667
Q ss_pred HHHHHHhCCCCCCCCceEEEecCCeeeEecCCCcccccCCCCccccCCCCcH-HHHHHHhcCchHHHHH-cCceEEEEEe
Q 003559 367 TSLCERLRWFGRGQSSFQLFEQPLVPAVDAEDGQWLVMRPFAPVCKPGGHGA-IWKLAHDKGIFKWFHD-NGRKGATVRQ 444 (811)
Q Consensus 367 ~~fle~n~yFGl~~~qV~~F~Q~~vP~l~~~dgki~l~~~~~l~~~P~GhGd-Iy~aL~~sGlLd~l~~-~Gikyi~v~~ 444 (811)
.+++++ ++ . .+.+..|+ .|.|-|+ +..++. .+.+ .+-+++.|..
T Consensus 65 ~~~l~~---~~-~--~~~ii~ep----------------------~~~gTa~ai~~a~~------~~~~~~~~~~vlVl~ 110 (274)
T cd02509 65 REQLPE---GL-P--EENIILEP----------------------EGRNTAPAIALAAL------YLAKRDPDAVLLVLP 110 (274)
T ss_pred HHHHhh---cC-C--CceEEECC----------------------CCCCcHHHHHHHHH------HHHhcCCCCeEEEec
Confidence 777765 11 1 12222211 1122332 333321 2222 2347899999
Q ss_pred CCCCcccccHhHHHHhhhh---hhcCCceeEEEeeecCCCCcCceEEEEEecCC--CccccceEEEEecccCcccCCCCC
Q 003559 445 VSNVVAATDLTLLALAGIG---LHHGKKLGFASCKRSSGATEGINVLIEKKNLD--GKWAYGLSCIEYTEFDKFGITRGP 519 (811)
Q Consensus 445 vDN~La~vDP~~l~flG~~---~~~~~~~~~~~vvRK~~~~e~vGvL~~~r~~d--Gk~~~~~~vVEYsEl~~~~~~~~~ 519 (811)
.|.+....+ .|...+--+ +..+..+.+.+ .. ..+..+-|.+.. ..+ |. ...|..+.|=|+...++.-
T Consensus 111 ~D~~i~~~~-~f~~~l~~~~~~~~~~~~vt~gi-~p-~~~~t~yGyI~~--~~~~~~~---~~~V~~f~EKP~~~~a~~~ 182 (274)
T cd02509 111 SDHLIEDVE-AFLKAVKKAVEAAEEGYLVTFGI-KP-TRPETGYGYIEA--GEKLGGG---VYRVKRFVEKPDLETAKEY 182 (274)
T ss_pred chhcccCHH-HHHHHHHHHHHHHHcCCEEEEEe-ee-cCCCCCeEEEEe--CCcCCCC---ceEEeEEEECcChHHHHHH
Confidence 998875321 111112111 12344444443 22 345567788854 112 21 0245556555554211111
Q ss_pred CCCCCcccccccceeeeeEeHHHHHhhhcc
Q 003559 520 FSSNGLQADFPANTNILYVDLASAELVGSS 549 (811)
Q Consensus 520 ~~dg~l~s~f~~Ninn~~fsL~~L~~vl~~ 549 (811)
..+| .|-.|...++|+.+.+.+.+++
T Consensus 183 ~~~g----~~~wNsGiyi~~~~~l~~~l~~ 208 (274)
T cd02509 183 LESG----NYLWNSGIFLFRAKTFLEELKK 208 (274)
T ss_pred hhcC----CeEEECceeeeeHHHHHHHHHH
Confidence 1122 1445999999999999999875
No 29
>PRK15480 glucose-1-phosphate thymidylyltransferase RfbA; Provisional
Probab=97.19 E-value=0.02 Score=62.52 Aligned_cols=181 Identities=19% Similarity=0.210 Sum_probs=105.8
Q ss_pred cEEEEEecCCccccCCC---CCCCCCceeeccccCCCCCcchHHHHHHHHHHHHHhHhhcCCcccceEEEecCCCCCchH
Q 003559 288 ELGEIYPLGGSADRLGL---VDHETGECLPAAMLPYCGRTLLEGLIRDLQAREFLYFKLYGKQCITPVAIMTSSAKNNHE 364 (811)
Q Consensus 288 kvavVlLAGGlGTRLG~---~~pKgg~~lpV~l~p~sgkTlLql~~e~I~~lq~La~~~~g~~~~IPl~IMTS~~~~Th~ 364 (811)
.+-.|+||||.||||.- ..||- ++|| .||+++++.++.+... | + --++|.+.. .-.+
T Consensus 3 ~~kaIILAgG~GtRL~PlT~~~pK~--Llpv-----~gkPmI~~~l~~l~~a--------G--i-~~I~ii~~~--~~~~ 62 (292)
T PRK15480 3 TRKGIILAGGSGTRLYPVTMAVSKQ--LLPI-----YDKPMIYYPLSTLMLA--------G--I-RDILIISTP--QDTP 62 (292)
T ss_pred ceEEEEECCCcccccCcccCCCCce--EeEE-----CCEEHHHHHHHHHHHC--------C--C-CEEEEEecC--CchH
Confidence 45679999999999985 78999 9988 5889999988887652 4 2 235555554 3455
Q ss_pred HHHHHHHHhCCCCCCCCceEEEecCCeeeEecCCCcccccCCCCccccCCCCcHHHHHHHhcCchHHHHHcCceEEEEEe
Q 003559 365 RITSLCERLRWFGRGQSSFQLFEQPLVPAVDAEDGQWLVMRPFAPVCKPGGHGAIWKLAHDKGIFKWFHDNGRKGATVRQ 444 (811)
Q Consensus 365 ~T~~fle~n~yFGl~~~qV~~F~Q~~vP~l~~~dgki~l~~~~~l~~~P~GhGdIy~aL~~sGlLd~l~~~Gikyi~v~~ 444 (811)
...++|.+...||+ ++.+..|. .|.|-|+-+.... ++.. +-+ ..+..
T Consensus 63 ~~~~~l~~g~~~g~---~i~y~~q~----------------------~~~Gta~Al~~a~------~~i~-~~~-~~lv~ 109 (292)
T PRK15480 63 RFQQLLGDGSQWGL---NLQYKVQP----------------------SPDGLAQAFIIGE------EFIG-GDD-CALVL 109 (292)
T ss_pred HHHHHHcCccccCc---eeEEEECC----------------------CCCCHHHHHHHHH------HHhC-CCC-EEEEE
Confidence 67788876666776 33333332 2667666554322 2222 223 45566
Q ss_pred CCCCcccccHhHHHHhhhhhhcCCceeEEEeeecCCCCcCceEEEEEecCCCccccceEEEEecccCcccCCCCCCCCCC
Q 003559 445 VSNVVAATDLTLLALAGIGLHHGKKLGFASCKRSSGATEGINVLIEKKNLDGKWAYGLSCIEYTEFDKFGITRGPFSSNG 524 (811)
Q Consensus 445 vDN~La~vDP~~l~flG~~~~~~~~~~~~~vvRK~~~~e~vGvL~~~r~~dGk~~~~~~vVEYsEl~~~~~~~~~~~dg~ 524 (811)
-||++...| +-.++-.+...+.++.+.+ .+... .+.-|++.. ..+|+ ++++.|=|... .+
T Consensus 110 gD~i~~~~~--l~~ll~~~~~~~~~~tv~~-~~v~~-p~~yGvv~~--d~~g~------v~~i~EKP~~p--------~s 169 (292)
T PRK15480 110 GDNIFYGHD--LPKLMEAAVNKESGATVFA-YHVND-PERYGVVEF--DQNGT------AISLEEKPLQP--------KS 169 (292)
T ss_pred CCeeeeccC--HHHHHHHHHhCCCCeEEEE-EEcCC-cccCcEEEE--CCCCc------EEEEEECCCCC--------CC
Confidence 889876554 3234555545555555443 33333 245677754 23455 33443322210 01
Q ss_pred cccccccceeeeeEeHHHHHh
Q 003559 525 LQADFPANTNILYVDLASAEL 545 (811)
Q Consensus 525 l~s~f~~Ninn~~fsL~~L~~ 545 (811)
..+|+..++|+-+.++.
T Consensus 170 ----~~a~~GiY~~~~~v~~~ 186 (292)
T PRK15480 170 ----NYAVTGLYFYDNDVVEM 186 (292)
T ss_pred ----CEEEEEEEEEChHHHHH
Confidence 12599999999765543
No 30
>TIGR01207 rmlA glucose-1-phosphate thymidylyltransferase, short form. This model describes a tightly conserved but broadly distributed subfamily (here designated as short form) of known and putative bacterial glucose-1-phosphate thymidylyltransferases. It is well characterized in several species as the first of four enzymes involved in the biosynthesis of dTDP-L-rhamnose, a cell wall constituent and a feedback inhibitor of the enzyme.
Probab=97.18 E-value=0.013 Score=63.66 Aligned_cols=176 Identities=19% Similarity=0.222 Sum_probs=102.0
Q ss_pred EEEecCCccccCCC---CCCCCCceeeccccCCCCCcchHHHHHHHHHHHHHhHhhcCCcccceEEEecCCCCCchHHHH
Q 003559 291 EIYPLGGSADRLGL---VDHETGECLPAAMLPYCGRTLLEGLIRDLQAREFLYFKLYGKQCITPVAIMTSSAKNNHERIT 367 (811)
Q Consensus 291 vVlLAGGlGTRLG~---~~pKgg~~lpV~l~p~sgkTlLql~~e~I~~lq~La~~~~g~~~~IPl~IMTS~~~~Th~~T~ 367 (811)
.|+||||.||||.- ..||- ++|| .||+++++.++.+... | .-.++|.|.. ...+..+
T Consensus 2 aIILAgG~GtRL~plT~~~pK~--Llpv-----~gkPmI~~~L~~l~~a--------G---i~~I~iv~~~--~~~~~~~ 61 (286)
T TIGR01207 2 GIILAGGSGTRLYPITRAVSKQ--LLPI-----YDKPMIYYPLSTLMLA--------G---IRDILIISTP--QDTPRFQ 61 (286)
T ss_pred EEEECCCCCccCCcccCCCCce--eeEE-----CCEEhHHHHHHHHHHC--------C---CCEEEEEecC--CcHHHHH
Confidence 47899999999974 78999 9998 5789999998887652 3 2245566665 3566778
Q ss_pred HHHHHhCCCCCCCCceEEEecCCeeeEecCCCcccccCCCCccccCCCCcHHHHHHHhcCchHHHHHcCceEEEEEeCCC
Q 003559 368 SLCERLRWFGRGQSSFQLFEQPLVPAVDAEDGQWLVMRPFAPVCKPGGHGAIWKLAHDKGIFKWFHDNGRKGATVRQVSN 447 (811)
Q Consensus 368 ~fle~n~yFGl~~~qV~~F~Q~~vP~l~~~dgki~l~~~~~l~~~P~GhGdIy~aL~~sGlLd~l~~~Gikyi~v~~vDN 447 (811)
++|.....||+ ++.+..|. .|-|-|+-+..... +.. -+-..+...||
T Consensus 62 ~~lg~g~~~g~---~i~~~~q~----------------------~~~Gta~al~~a~~------~l~--~~~~~li~gD~ 108 (286)
T TIGR01207 62 QLLGDGSQWGV---NLSYAVQP----------------------SPDGLAQAFIIGED------FIG--GDPSALVLGDN 108 (286)
T ss_pred HHhccccccCc---eEEEEEcc----------------------CCCCHHHHHHHHHH------HhC--CCCEEEEECCE
Confidence 88876666675 34333331 45566554433221 221 13345557999
Q ss_pred CcccccHhHHHHhhhhhhcCCceeEEEeeecCCCCcCceEEEEEecCCCccccceEEEEecccCcccCCCCCCCCCCccc
Q 003559 448 VVAATDLTLLALAGIGLHHGKKLGFASCKRSSGATEGINVLIEKKNLDGKWAYGLSCIEYTEFDKFGITRGPFSSNGLQA 527 (811)
Q Consensus 448 ~La~vDP~~l~flG~~~~~~~~~~~~~vvRK~~~~e~vGvL~~~r~~dGk~~~~~~vVEYsEl~~~~~~~~~~~dg~l~s 527 (811)
++...| +-.++-.+...+.++.+.+ .+...+ +.-|++.. ..+|+ ++++.|=|... . |
T Consensus 109 i~~~~~--l~~ll~~~~~~~~~~ti~~-~~v~~p-~~yGvv~~--d~~g~------V~~i~EKp~~~---------~--s 165 (286)
T TIGR01207 109 IFYGHD--LSDLLKRAAARESGATVFA-YQVSDP-ERYGVVEF--DSNGR------AISIEEKPAQP---------K--S 165 (286)
T ss_pred eccccC--HHHHHHHHHhcCCCcEEEE-EEccCH-HHCceEEE--CCCCe------EEEEEECCCCC---------C--C
Confidence 875544 2233444444555554443 333332 45677753 23454 44444422210 0 1
Q ss_pred ccccceeeeeEeHHHH
Q 003559 528 DFPANTNILYVDLASA 543 (811)
Q Consensus 528 ~f~~Ninn~~fsL~~L 543 (811)
. -+|+...+|+-+.+
T Consensus 166 ~-~~~~GiYi~~~~i~ 180 (286)
T TIGR01207 166 N-YAVTGLYFYDNRVV 180 (286)
T ss_pred C-EEEEEEEEEchHHH
Confidence 1 25999999997754
No 31
>PRK14353 glmU bifunctional N-acetylglucosamine-1-phosphate uridyltransferase/glucosamine-1-phosphate acetyltransferase; Provisional
Probab=97.16 E-value=0.018 Score=65.55 Aligned_cols=184 Identities=16% Similarity=0.195 Sum_probs=103.3
Q ss_pred cEEEEEecCCccccCCCCCCCCCceeeccccCCCCCcchHHHHHHHHHHHHHhHhhcCCcccceEEEecCCCCCchHHHH
Q 003559 288 ELGEIYPLGGSADRLGLVDHETGECLPAAMLPYCGRTLLEGLIRDLQAREFLYFKLYGKQCITPVAIMTSSAKNNHERIT 367 (811)
Q Consensus 288 kvavVlLAGGlGTRLG~~~pKgg~~lpV~l~p~sgkTlLql~~e~I~~lq~La~~~~g~~~~IPl~IMTS~~~~Th~~T~ 367 (811)
++..|+||||.|||||...||. ++|+ .||+++++.++.+... | .-.++|.++. .++...
T Consensus 5 ~~~aiILAaG~gsR~~~~~pK~--ll~v-----~gkpli~~~l~~l~~~--------g---i~~ivvv~~~---~~~~i~ 63 (446)
T PRK14353 5 TCLAIILAAGEGTRMKSSLPKV--LHPV-----AGRPMLAHVLAAAASL--------G---PSRVAVVVGP---GAEAVA 63 (446)
T ss_pred cceEEEEcCCCCCccCCCCCcc--cCEE-----CCchHHHHHHHHHHhC--------C---CCcEEEEECC---CHHHHH
Confidence 5678999999999999878999 8887 6899999999888653 2 2356777776 566677
Q ss_pred HHHHHhCCCCCCCCceEEEecCCeeeEecCCCcccccCCCCccccCCCCcH-HHHHHHhcCchHHHHHcCceEEEEEeCC
Q 003559 368 SLCERLRWFGRGQSSFQLFEQPLVPAVDAEDGQWLVMRPFAPVCKPGGHGA-IWKLAHDKGIFKWFHDNGRKGATVRQVS 446 (811)
Q Consensus 368 ~fle~n~yFGl~~~qV~~F~Q~~vP~l~~~dgki~l~~~~~l~~~P~GhGd-Iy~aL~~sGlLd~l~~~Gikyi~v~~vD 446 (811)
+++.+. +. .+.++.|+ .|.|.++ ++.++ +.+ ..+-+++.|.+.|
T Consensus 64 ~~~~~~---~~---~~~~~~~~----------------------~~~G~~~sl~~a~------~~l-~~~~~~~lv~~~D 108 (446)
T PRK14353 64 AAAAKI---AP---DAEIFVQK----------------------ERLGTAHAVLAAR------EAL-AGGYGDVLVLYGD 108 (446)
T ss_pred HHhhcc---CC---CceEEEcC----------------------CCCCcHHHHHHHH------HHH-hccCCCEEEEeCC
Confidence 776531 11 12222220 1334433 33333 222 2234778888999
Q ss_pred CCcccccHhHHHHhhhhhhcCCceeEEEeeecCCCCcCceEEEEEecCCCccccceEEEEecccCcccCCCCCCCCCCcc
Q 003559 447 NVVAATDLTLLALAGIGLHHGKKLGFASCKRSSGATEGINVLIEKKNLDGKWAYGLSCIEYTEFDKFGITRGPFSSNGLQ 526 (811)
Q Consensus 447 N~La~vDP~~l~flG~~~~~~~~~~~~~vvRK~~~~e~vGvL~~~r~~dGk~~~~~~vVEYsEl~~~~~~~~~~~dg~l~ 526 (811)
.++...+. +-.++- ....+.+..+.+ .+.. ...+.|++.. .+|+ ++++.|=++.. . .+...
T Consensus 109 ~P~i~~~~-l~~l~~-~~~~~~~~~i~~-~~~~-~~~~~g~~~~---~~g~------v~~~~ek~~~~-~----~~~~~- 169 (446)
T PRK14353 109 TPLITAET-LARLRE-RLADGADVVVLG-FRAA-DPTGYGRLIV---KGGR------LVAIVEEKDAS-D----EERAI- 169 (446)
T ss_pred cccCCHHH-HHHHHH-hHhcCCcEEEEE-EEeC-CCCcceEEEE---CCCe------EEEEEECCCCC-h----HHhhc-
Confidence 97654421 212222 223344444443 3322 2235666643 4554 44544432221 0 00000
Q ss_pred cccccceeeeeEeHHHHHhhhc
Q 003559 527 ADFPANTNILYVDLASAELVGS 548 (811)
Q Consensus 527 s~f~~Ninn~~fsL~~L~~vl~ 548 (811)
+-.|+..++|+-+.+.+.++
T Consensus 170 --~~~~~Giy~~~~~~l~~~l~ 189 (446)
T PRK14353 170 --TLCNSGVMAADGADALALLD 189 (446)
T ss_pred --eEEEEEEEEEEHHHHHHHHH
Confidence 22488899999887766654
No 32
>PLN02241 glucose-1-phosphate adenylyltransferase
Probab=97.12 E-value=0.019 Score=65.72 Aligned_cols=216 Identities=14% Similarity=0.120 Sum_probs=121.7
Q ss_pred CcEEEEEecCCccccCC---CCCCCCCceeeccccCCCCCcchHHHHHHHHHHHHHhHhhcCCcccceEEEecCCCCCch
Q 003559 287 PELGEIYPLGGSADRLG---LVDHETGECLPAAMLPYCGRTLLEGLIRDLQAREFLYFKLYGKQCITPVAIMTSSAKNNH 363 (811)
Q Consensus 287 ~kvavVlLAGGlGTRLG---~~~pKgg~~lpV~l~p~sgkTlLql~~e~I~~lq~La~~~~g~~~~IPl~IMTS~~~~Th 363 (811)
.++..|+||||.||||. ...||. ++|+. ..+.++++.++.+... | .=-++|.|.. ..
T Consensus 2 ~~~~aIIlA~G~gtRl~PlT~~~PK~--llpv~----g~~plId~~L~~l~~~--------G---i~~i~iv~~~---~~ 61 (436)
T PLN02241 2 KSVAAIILGGGAGTRLFPLTKRRAKP--AVPIG----GNYRLIDIPMSNCINS--------G---INKIYVLTQF---NS 61 (436)
T ss_pred CceEEEEEeCCCCCcchhhhcCCccc--ceEeC----CcceEehHHHHHHHhC--------C---CCEEEEEecc---CH
Confidence 36788999999999998 688999 99984 2248999988887542 4 2235777776 77
Q ss_pred HHHHHHHHHhCCCCCCCCceEEEecCCeeeEecCCCcccccCCCCccccCCCCcHHHHHHHhcCchHHHHHcCceEEEEE
Q 003559 364 ERITSLCERLRWFGRGQSSFQLFEQPLVPAVDAEDGQWLVMRPFAPVCKPGGHGAIWKLAHDKGIFKWFHDNGRKGATVR 443 (811)
Q Consensus 364 ~~T~~fle~n~yFGl~~~qV~~F~Q~~vP~l~~~dgki~l~~~~~l~~~P~GhGdIy~aL~~sGlLd~l~~~Gikyi~v~ 443 (811)
+...++|++..+|+.... +.++.+..+.. ... ..-...|.|.||-...... .+++...++-+++.|.
T Consensus 62 ~~i~~~l~~~~~~~~~~~----~~~~~~~i~~~------~q~-~~~~~~~lGt~~al~~~~~--~~~~~~~~~~~~~lv~ 128 (436)
T PLN02241 62 ASLNRHLSRAYNFGNGGN----FGDGFVEVLAA------TQT-PGEKGWFQGTADAVRQFLW--LFEDAKNKNVEEVLIL 128 (436)
T ss_pred HHHHHHHhccCCCCCCcc----cCCCCEEEcCC------ccc-CCCCccccCcHHHHHHHHH--HHHhcccCCCCEEEEe
Confidence 889999985433443111 11111111110 000 0011257888775543322 2332222235789999
Q ss_pred eCCCCcccccHhHHHHhhhhhhcCCceeEEEeeecCC-CCcCceEEEEEecCCCccccceEEEEecccCcccCCCCCC-C
Q 003559 444 QVSNVVAATDLTLLALAGIGLHHGKKLGFASCKRSSG-ATEGINVLIEKKNLDGKWAYGLSCIEYTEFDKFGITRGPF-S 521 (811)
Q Consensus 444 ~vDN~La~vDP~~l~flG~~~~~~~~~~~~~vvRK~~-~~e~vGvL~~~r~~dGk~~~~~~vVEYsEl~~~~~~~~~~-~ 521 (811)
+-|++ ...| +-.++-++...++++.+.+ .+... ....-|++.. ..+| .++++.|-|..... ... -
T Consensus 129 ~gD~v-~~~d--l~~ll~~h~~~~a~~ti~~-~~v~~~~~~~ygvv~~--d~~~------~v~~~~Ekp~~~~~-~~~~~ 195 (436)
T PLN02241 129 SGDHL-YRMD--YMDFVQKHRESGADITIAC-LPVDESRASDFGLMKI--DDTG------RIIEFSEKPKGDEL-KAMQV 195 (436)
T ss_pred cCCeE-EccC--HHHHHHHHHHcCCCEEEEE-EecchhhcCcceEEEE--CCCC------CEEEEEECCCCccc-ccccc
Confidence 99985 4444 3344666666677665543 33221 1245677754 2334 46777776543100 000 0
Q ss_pred CCC--------cccc-cccceeeeeEeHHHHHhhhc
Q 003559 522 SNG--------LQAD-FPANTNILYVDLASAELVGS 548 (811)
Q Consensus 522 dg~--------l~s~-f~~Ninn~~fsL~~L~~vl~ 548 (811)
+.+ .... .-.|+...+|+-+.|..+++
T Consensus 196 ~~~~~~~~~~~~~~~~~~~~~GIyi~~~~~l~~ll~ 231 (436)
T PLN02241 196 DTTVLGLSPEEAKEKPYIASMGIYVFKKDVLLKLLR 231 (436)
T ss_pred cccccccccccccccceEEEeEEEEEEHHHHHHHHH
Confidence 000 0001 22499999999998887765
No 33
>PRK14358 glmU bifunctional N-acetylglucosamine-1-phosphate uridyltransferase/glucosamine-1-phosphate acetyltransferase; Provisional
Probab=97.11 E-value=0.018 Score=66.82 Aligned_cols=178 Identities=15% Similarity=0.168 Sum_probs=99.9
Q ss_pred CcEEEEEecCCccccCCCCCCCCCceeeccccCCCCCcchHHHHHHHHHHHHHhHhhcCCcccceEEEecCCCCCchHHH
Q 003559 287 PELGEIYPLGGSADRLGLVDHETGECLPAAMLPYCGRTLLEGLIRDLQAREFLYFKLYGKQCITPVAIMTSSAKNNHERI 366 (811)
Q Consensus 287 ~kvavVlLAGGlGTRLG~~~pKgg~~lpV~l~p~sgkTlLql~~e~I~~lq~La~~~~g~~~~IPl~IMTS~~~~Th~~T 366 (811)
.++..|+||||.|||||...||. ++|+ .|+++++..++++.+. | .-.++|.|.. ..+..
T Consensus 6 ~~~~avILAaG~gtRl~~~~pK~--llpi-----~gkpli~~~l~~l~~~--------g---i~~ivvv~~~---~~~~i 64 (481)
T PRK14358 6 RPLDVVILAAGQGTRMKSALPKV--LHPV-----AGRPMVAWAVKAARDL--------G---ARKIVVVTGH---GAEQV 64 (481)
T ss_pred CCceEEEECCCCCCcCCCCCCce--ecEE-----CCeeHHHHHHHHHHhC--------C---CCeEEEEeCC---CHHHH
Confidence 36788999999999999888999 9887 5899999988877552 3 2346676765 55666
Q ss_pred HHHHHHhCCCCCCCCceEEEecCCeeeEecCCCcccccCCCCccccCCCCcH-HHHHHHhcCchHHHHHcCceEEEEEeC
Q 003559 367 TSLCERLRWFGRGQSSFQLFEQPLVPAVDAEDGQWLVMRPFAPVCKPGGHGA-IWKLAHDKGIFKWFHDNGRKGATVRQV 445 (811)
Q Consensus 367 ~~fle~n~yFGl~~~qV~~F~Q~~vP~l~~~dgki~l~~~~~l~~~P~GhGd-Iy~aL~~sGlLd~l~~~Gikyi~v~~v 445 (811)
.++|+. . .+.+..|. .|.|-|+ ++.++. .+. ..-..+.|.+.
T Consensus 65 ~~~~~~---~-----~i~~v~~~----------------------~~~Gt~~al~~~~~------~l~-~~~~~~lV~~g 107 (481)
T PRK14358 65 EAALQG---S-----GVAFARQE----------------------QQLGTGDAFLSGAS------ALT-EGDADILVLYG 107 (481)
T ss_pred HHHhcc---C-----CcEEecCC----------------------CcCCcHHHHHHHHH------Hhh-CCCCcEEEEeC
Confidence 666642 1 13222221 1344444 333332 222 22233678899
Q ss_pred CCCcccccHhHHHHhhhhhhcCCceeEEEeeecCCCCcCceEEEEEecCCCccccceEEEEecccCcccCCCCCCCCCCc
Q 003559 446 SNVVAATDLTLLALAGIGLHHGKKLGFASCKRSSGATEGINVLIEKKNLDGKWAYGLSCIEYTEFDKFGITRGPFSSNGL 525 (811)
Q Consensus 446 DN~La~vDP~~l~flG~~~~~~~~~~~~~vvRK~~~~e~vGvL~~~r~~dGk~~~~~~vVEYsEl~~~~~~~~~~~dg~l 525 (811)
|+++...+ .+-.++..+...++++.+.+ .+.+. ..+-|++.. ..+|+ ++++.|=|+.. . ++ .
T Consensus 108 D~P~i~~~-~l~~ll~~~~~~~~~~ti~~-~~~~~-~~~yG~v~~--d~~g~------v~~~~Ek~~~~-~----~~--~ 169 (481)
T PRK14358 108 DTPLLRPD-TLRALVADHRAQGSAMTILT-GELPD-ATGYGRIVR--GADGA------VERIVEQKDAT-D----AE--K 169 (481)
T ss_pred CeeccCHH-HHHHHHHHHHhcCCeEEEEE-EEcCC-CCCceEEEE--CCCCC------EEEEEECCCCC-h----hH--h
Confidence 99876542 22233555555565555443 33332 234678754 23555 34444423221 0 00 0
Q ss_pred ccccccceeeeeEeHH
Q 003559 526 QADFPANTNILYVDLA 541 (811)
Q Consensus 526 ~s~f~~Ninn~~fsL~ 541 (811)
.+ -..|+..++|+-+
T Consensus 170 ~~-~~~n~Giyi~~~~ 184 (481)
T PRK14358 170 AI-GEFNSGVYVFDAR 184 (481)
T ss_pred hC-CeEEEEEEEEchH
Confidence 00 0148899999844
No 34
>TIGR01173 glmU UDP-N-acetylglucosamine diphosphorylase/glucosamine-1-phosphate N-acetyltransferase. This protein is a bifunctional enzyme, GlmU, which catalyzes last two reactions in the four-step pathway of UDP-N-acetylglucosamine biosynthesis from fructose-6-phosphate. Its reaction product is required from peptidoglycan biosynthesis, LPS biosynthesis in species with LPS, and certain other processes.
Probab=97.04 E-value=0.011 Score=66.86 Aligned_cols=61 Identities=16% Similarity=0.241 Sum_probs=47.5
Q ss_pred EEEecCCccccCCCCCCCCCceeeccccCCCCCcchHHHHHHHHHHHHHhHhhcCCcccceEEEecCCCCCchHHHHHHH
Q 003559 291 EIYPLGGSADRLGLVDHETGECLPAAMLPYCGRTLLEGLIRDLQAREFLYFKLYGKQCITPVAIMTSSAKNNHERITSLC 370 (811)
Q Consensus 291 vVlLAGGlGTRLG~~~pKgg~~lpV~l~p~sgkTlLql~~e~I~~lq~La~~~~g~~~~IPl~IMTS~~~~Th~~T~~fl 370 (811)
.|+||||.|||||...||- ++|+ .|+++++..++++... | .-.++|.++. ..+.+.+++
T Consensus 3 aiIlAaG~g~R~~~~~pK~--l~~i-----~gkpli~~~l~~l~~~--------g---~~~iiiv~~~---~~~~i~~~~ 61 (451)
T TIGR01173 3 VVILAAGKGTRMKSDLPKV--LHPL-----AGKPMLEHVIDAARAL--------G---PQKIHVVYGH---GAEQVRKAL 61 (451)
T ss_pred EEEEcCCCCcccCCCCchh--hcee-----CCccHHHHHHHHHHhC--------C---CCeEEEEECC---CHHHHHHHh
Confidence 5788999999999888998 8887 6899999988877542 3 2356788887 466677776
Q ss_pred HH
Q 003559 371 ER 372 (811)
Q Consensus 371 e~ 372 (811)
.+
T Consensus 62 ~~ 63 (451)
T TIGR01173 62 AN 63 (451)
T ss_pred cC
Confidence 64
No 35
>cd06426 NTP_transferase_like_2 NTP_trnasferase_like_2 is a member of the nucleotidyl transferase family. This is a subfamily of nucleotidyl transferases. Nucleotidyl transferases transfer nucleotides onto phosphosugars. The activated sugars are precursors for synthesis of lipopolysaccharide, glycolipids and polysaccharides. Other subfamilies of nucleotidyl transferases include Alpha-D-Glucose-1-Phosphate Cytidylyltransferase, Mannose-1-phosphate guanyltransferase, and Glucose-1-phosphate thymidylyltransferase.
Probab=97.03 E-value=0.027 Score=57.39 Aligned_cols=172 Identities=17% Similarity=0.152 Sum_probs=96.5
Q ss_pred EEEecCCccccCC---CCCCCCCceeeccccCCCCCcchHHHHHHHHHHHHHhHhhcCCcccceEEEecCCCCCchHHHH
Q 003559 291 EIYPLGGSADRLG---LVDHETGECLPAAMLPYCGRTLLEGLIRDLQAREFLYFKLYGKQCITPVAIMTSSAKNNHERIT 367 (811)
Q Consensus 291 vVlLAGGlGTRLG---~~~pKgg~~lpV~l~p~sgkTlLql~~e~I~~lq~La~~~~g~~~~IPl~IMTS~~~~Th~~T~ 367 (811)
+|+||||.|+||+ ...||. ++|+ .|+++++..++++... | +. .++|.++. ..+...
T Consensus 1 ~vIlaaG~g~R~~plt~~~pK~--ll~~-----~g~pli~~~l~~l~~~--------~--~~-~iivv~~~---~~~~i~ 59 (220)
T cd06426 1 VVIMAGGKGTRLRPLTENTPKP--MLKV-----GGKPILETIIDRFIAQ--------G--FR-NFYISVNY---LAEMIE 59 (220)
T ss_pred CEEecCCCccccCcccCCCCCc--cCeE-----CCcchHHHHHHHHHHC--------C--Cc-EEEEECcc---CHHHHH
Confidence 4889999999997 368999 8887 6899999999888653 2 11 45667776 566777
Q ss_pred HHHHHhCCCCCCCCceEEEecCCeeeEecCCCcccccCCCCccccCCCCcHHHHHHHhcCchHHHHHcCceEEEEEeCCC
Q 003559 368 SLCERLRWFGRGQSSFQLFEQPLVPAVDAEDGQWLVMRPFAPVCKPGGHGAIWKLAHDKGIFKWFHDNGRKGATVRQVSN 447 (811)
Q Consensus 368 ~fle~n~yFGl~~~qV~~F~Q~~vP~l~~~dgki~l~~~~~l~~~P~GhGdIy~aL~~sGlLd~l~~~Gikyi~v~~vDN 447 (811)
+++.+...+|+ ++.+..| -.|.|-|+....+.. ..-+++.|...|+
T Consensus 60 ~~~~~~~~~~~---~i~~~~~----------------------~~~~g~~~~l~~~~~---------~~~~~~lv~~~D~ 105 (220)
T cd06426 60 DYFGDGSKFGV---NISYVRE----------------------DKPLGTAGALSLLPE---------KPTDPFLVMNGDI 105 (220)
T ss_pred HHHCCccccCc---cEEEEEC----------------------CCCCcchHHHHHHHh---------hCCCCEEEEcCCE
Confidence 77765332332 2221111 123354555443332 2246778888886
Q ss_pred CcccccHhHHHHhhhhhhcCCceeEEEeeecCCCCcCceEEEEEecCCCccccceEEEEecccCcccCCCCCCCCCCccc
Q 003559 448 VVAATDLTLLALAGIGLHHGKKLGFASCKRSSGATEGINVLIEKKNLDGKWAYGLSCIEYTEFDKFGITRGPFSSNGLQA 527 (811)
Q Consensus 448 ~La~vDP~~l~flG~~~~~~~~~~~~~vvRK~~~~e~vGvL~~~r~~dGk~~~~~~vVEYsEl~~~~~~~~~~~dg~l~s 527 (811)
+. .. .+-.++-.....+.+..+.+ ++......-|++-. .+|+ ++++.|=+ . ..
T Consensus 106 i~-~~--~~~~l~~~~~~~~~~~~~~~--~~~~~~~~~g~~~~---d~~~------v~~~~ek~-~--------~~---- 158 (220)
T cd06426 106 LT-NL--NYEHLLDFHKENNADATVCV--REYEVQVPYGVVET---EGGR------ITSIEEKP-T--------HS---- 158 (220)
T ss_pred ee-cc--CHHHHHHHHHhcCCCEEEEE--EEcCCCCcceEEEE---CCCE------EEEEEECC-C--------CC----
Confidence 33 22 23334544444555554443 22222334565532 2343 44543311 0 00
Q ss_pred ccccceeeeeEeHHHHHh
Q 003559 528 DFPANTNILYVDLASAEL 545 (811)
Q Consensus 528 ~f~~Ninn~~fsL~~L~~ 545 (811)
...|++..+|+-+.++.
T Consensus 159 -~~~~~Giy~~~~~~~~~ 175 (220)
T cd06426 159 -FLVNAGIYVLEPEVLDL 175 (220)
T ss_pred -CeEEEEEEEEcHHHHhh
Confidence 11488899999887654
No 36
>PRK14355 glmU bifunctional N-acetylglucosamine-1-phosphate uridyltransferase/glucosamine-1-phosphate acetyltransferase; Provisional
Probab=97.03 E-value=0.026 Score=64.74 Aligned_cols=185 Identities=14% Similarity=0.112 Sum_probs=105.6
Q ss_pred cEEEEEecCCccccCCCCCCCCCceeeccccCCCCCcchHHHHHHHHHHHHHhHhhcCCcccceEEEecCCCCCchHHHH
Q 003559 288 ELGEIYPLGGSADRLGLVDHETGECLPAAMLPYCGRTLLEGLIRDLQAREFLYFKLYGKQCITPVAIMTSSAKNNHERIT 367 (811)
Q Consensus 288 kvavVlLAGGlGTRLG~~~pKgg~~lpV~l~p~sgkTlLql~~e~I~~lq~La~~~~g~~~~IPl~IMTS~~~~Th~~T~ 367 (811)
++..|+||||.||||+...||. ++|+ .|++++++.++++.+. | .-.++|.++. ..+...
T Consensus 3 ~~~avIlAaG~g~Rl~~~~pK~--l~pi-----~g~pli~~~l~~l~~~--------g---i~~iiiv~~~---~~~~i~ 61 (459)
T PRK14355 3 NLAAIILAAGKGTRMKSDLVKV--MHPL-----AGRPMVSWPVAAAREA--------G---AGRIVLVVGH---QAEKVR 61 (459)
T ss_pred cceEEEEcCCCCcccCCCCCce--ecee-----CCccHHHHHHHHHHhc--------C---CCeEEEEECC---CHHHHH
Confidence 5677899999999999889999 9887 5789999988877552 3 2367888887 566677
Q ss_pred HHHHHhCCCCCCCCceEEEecCCeeeEecCCCcccccCCCCccccCCCCcH-HHHHHHhcCchHHHHHcCceEEEEEeCC
Q 003559 368 SLCERLRWFGRGQSSFQLFEQPLVPAVDAEDGQWLVMRPFAPVCKPGGHGA-IWKLAHDKGIFKWFHDNGRKGATVRQVS 446 (811)
Q Consensus 368 ~fle~n~yFGl~~~qV~~F~Q~~vP~l~~~dgki~l~~~~~l~~~P~GhGd-Iy~aL~~sGlLd~l~~~Gikyi~v~~vD 446 (811)
++|.+.. .+.+..|. .|-|.|+ ++.++ +.+ +..-+++.|.+.|
T Consensus 62 ~~~~~~~-------~i~~~~~~----------------------~~~Gt~~al~~a~------~~l-~~~~~~vlv~~gD 105 (459)
T PRK14355 62 EHFAGDG-------DVSFALQE----------------------EQLGTGHAVACAA------PAL-DGFSGTVLILCGD 105 (459)
T ss_pred HHhccCC-------ceEEEecC----------------------CCCCHHHHHHHHH------HHh-hccCCcEEEEECC
Confidence 7765311 23222221 1335554 33333 222 2224789999999
Q ss_pred CCcccccHhHHHHhhhhhhcCCceeEEEeeecCCCCcCceEEEEEecCCCccccceEEEEecccCcccCCCCCCCCCCcc
Q 003559 447 NVVAATDLTLLALAGIGLHHGKKLGFASCKRSSGATEGINVLIEKKNLDGKWAYGLSCIEYTEFDKFGITRGPFSSNGLQ 526 (811)
Q Consensus 447 N~La~vDP~~l~flG~~~~~~~~~~~~~vvRK~~~~e~vGvL~~~r~~dGk~~~~~~vVEYsEl~~~~~~~~~~~dg~l~ 526 (811)
+++...+ .+-.++-.+...+.++.+.. .+...+ ..-|++.. ..+|+ +++..|=++.. . ....
T Consensus 106 ~p~~~~~-~i~~l~~~~~~~~~~~~v~~-~~~~~~-~~~g~v~~--d~~g~------v~~~~ek~~~~-~----~~~~-- 167 (459)
T PRK14355 106 VPLLRAE-TLQGMLAAHRATGAAVTVLT-ARLENP-FGYGRIVR--DADGR------VLRIVEEKDAT-P----EERS-- 167 (459)
T ss_pred ccCcCHH-HHHHHHHHHHhcCCcEEEEE-EEcCCC-CcCCEEEE--cCCCC------EEEEEEcCCCC-h----hHhh--
Confidence 9865431 11123444444444443332 333333 23455533 23454 44544433221 0 0000
Q ss_pred cccccceeeeeEeHHHHHhhhc
Q 003559 527 ADFPANTNILYVDLASAELVGS 548 (811)
Q Consensus 527 s~f~~Ninn~~fsL~~L~~vl~ 548 (811)
.+..|+..++|+-+++.+.+.
T Consensus 168 -~~~~~~Giy~~~~~~l~~~l~ 188 (459)
T PRK14355 168 -IREVNSGIYCVEAAFLFDAIG 188 (459)
T ss_pred -ccEEEEEEEEEeHHHHHHHHH
Confidence 123599999999988766664
No 37
>cd02508 ADP_Glucose_PP ADP-glucose pyrophosphorylase is involved in the biosynthesis of glycogen or starch. ADP-glucose pyrophosphorylase (glucose-1-phosphate adenylyltransferase) catalyzes a very important step in the biosynthesis of alpha 1,4-glucans (glycogen or starch) in bacteria and plants: synthesis of the activated glucosyl donor, ADP-glucose, from glucose-1-phosphate and ATP. ADP-glucose pyrophosphorylase is a tetrameric allosterically regulated enzyme. While a homotetramer in bacteria, in plant chloroplasts and amyloplasts, it is a heterotetramer of two different, yet evolutionary related, subunits. There are a number of conserved regions in the sequence of bacterial and plant ADP-glucose pyrophosphorylase subunits. It is a subfamily of a very diverse glycosy transferase family 2.
Probab=97.01 E-value=0.0089 Score=60.64 Aligned_cols=136 Identities=13% Similarity=0.158 Sum_probs=82.8
Q ss_pred EEecCCccccCC---CCCCCCCceeeccccCCCCC-cchHHHHHHHHHHHHHhHhhcCCcccceEEEecCCCCCchHHHH
Q 003559 292 IYPLGGSADRLG---LVDHETGECLPAAMLPYCGR-TLLEGLIRDLQAREFLYFKLYGKQCITPVAIMTSSAKNNHERIT 367 (811)
Q Consensus 292 VlLAGGlGTRLG---~~~pKgg~~lpV~l~p~sgk-TlLql~~e~I~~lq~La~~~~g~~~~IPl~IMTS~~~~Th~~T~ 367 (811)
|+||||.||||. ...||. ++|+ .|+ +++++.++.+... | .-.++|.|+. ..+...
T Consensus 2 vILAaG~gtRl~plt~~~pK~--llpv-----~g~~pli~~~l~~l~~~--------g---i~~iivv~~~---~~~~i~ 60 (200)
T cd02508 2 IILAGGEGTRLSPLTKKRAKP--AVPF-----GGRYRLIDFPLSNMVNS--------G---IRNVGVLTQY---KSRSLN 60 (200)
T ss_pred EEeCCCCCcccchhhcCCcce--eeEE-----CCeeeeHHHHHHHHHHC--------C---CCEEEEEeCC---ChHHHH
Confidence 789999999996 478999 9998 477 9999998887652 3 3467889987 678889
Q ss_pred HHHHHhCCCCCCCC--ceEEEecCCeeeEecCCCcccccCCCCccccCCCCcHHHHHHHhcCchHHHHHcCceEEEEEeC
Q 003559 368 SLCERLRWFGRGQS--SFQLFEQPLVPAVDAEDGQWLVMRPFAPVCKPGGHGAIWKLAHDKGIFKWFHDNGRKGATVRQV 445 (811)
Q Consensus 368 ~fle~n~yFGl~~~--qV~~F~Q~~vP~l~~~dgki~l~~~~~l~~~P~GhGdIy~aL~~sGlLd~l~~~Gikyi~v~~v 445 (811)
++|.+...+|++.. .+.+.. .......-.|-|.|+-...... .+....-+++.|...
T Consensus 61 ~~~~~~~~~~~~~~~~~~~~~~----------------~~~~~~~~~~~Gta~al~~a~~-----~i~~~~~~~~lv~~g 119 (200)
T cd02508 61 DHLGSGKEWDLDRKNGGLFILP----------------PQQRKGGDWYRGTADAIYQNLD-----YIERSDPEYVLILSG 119 (200)
T ss_pred HHHhCCCcccCCCCCCCEEEeC----------------cccCCCCCcccCcHHHHHHHHH-----HHHhCCCCEEEEecC
Confidence 99987666665411 121110 0000012356676664433322 233333477889999
Q ss_pred CCCcccccHhHHHHhhhhhhcCCceeE
Q 003559 446 SNVVAATDLTLLALAGIGLHHGKKLGF 472 (811)
Q Consensus 446 DN~La~vDP~~l~flG~~~~~~~~~~~ 472 (811)
|++ ...| +-.++-.+..+++++.+
T Consensus 120 D~v-~~~~--~~~~l~~~~~~~~~~t~ 143 (200)
T cd02508 120 DHI-YNMD--YREMLDFHIESGADITV 143 (200)
T ss_pred CEE-EecC--HHHHHHHHHHcCCCEEE
Confidence 984 3332 22334444444444433
No 38
>PRK00725 glgC glucose-1-phosphate adenylyltransferase; Provisional
Probab=96.98 E-value=0.035 Score=63.40 Aligned_cols=201 Identities=9% Similarity=0.050 Sum_probs=117.0
Q ss_pred CcEEEEEecCCccccCCC---CCCCCCceeeccccCCCCCc-chHHHHHHHHHHHHHhHhhcCCcccceEEEecCCCCCc
Q 003559 287 PELGEIYPLGGSADRLGL---VDHETGECLPAAMLPYCGRT-LLEGLIRDLQAREFLYFKLYGKQCITPVAIMTSSAKNN 362 (811)
Q Consensus 287 ~kvavVlLAGGlGTRLG~---~~pKgg~~lpV~l~p~sgkT-lLql~~e~I~~lq~La~~~~g~~~~IPl~IMTS~~~~T 362 (811)
.++..|+||||.||||.- ..||. ++|+ .|++ ++++.++++... | .-.++|.|.. .
T Consensus 14 ~~~~aVILAaG~GtRl~pLT~~~PK~--llpv-----~gkp~lI~~~l~~l~~~--------G---i~~i~vv~~~---~ 72 (425)
T PRK00725 14 RDTLALILAGGRGSRLKELTDKRAKP--AVYF-----GGKFRIIDFALSNCINS--------G---IRRIGVLTQY---K 72 (425)
T ss_pred cceEEEEECCCCCCcchhhhCCCcce--eEEE-----CCEEEEhHHHHHHHHHC--------C---CCeEEEEecC---C
Confidence 478999999999999986 78999 9988 5786 999998887652 4 2356888886 7
Q ss_pred hHHHHHHHHHhCCCCCCCC----ceEEEecCCeeeEecCCCcccccCCCCccccCCCCcHH-HHHHHhcCchHHHHHcCc
Q 003559 363 HERITSLCERLRWFGRGQS----SFQLFEQPLVPAVDAEDGQWLVMRPFAPVCKPGGHGAI-WKLAHDKGIFKWFHDNGR 437 (811)
Q Consensus 363 h~~T~~fle~n~yFGl~~~----qV~~F~Q~~vP~l~~~dgki~l~~~~~l~~~P~GhGdI-y~aL~~sGlLd~l~~~Gi 437 (811)
.+...++|.+. +++.+. .+.++.+. ........|-|-|+- +.++ +.+....-
T Consensus 73 ~~~i~~~~~~~--~~~~~~~~~~~i~i~~~~---------------~~~~~e~~~lGTa~al~~a~------~~l~~~~~ 129 (425)
T PRK00725 73 AHSLIRHIQRG--WSFFREELGEFVDLLPAQ---------------QRVDEENWYRGTADAVYQNL------DIIRRYDP 129 (425)
T ss_pred HHHHHHHHHhh--hcccccCCCCeEEEeCCc---------------ccCCCCccccCcHHHHHHHH------HHHHhcCC
Confidence 88888998752 222111 11111100 011112345676553 3333 23333334
Q ss_pred eEEEEEeCCCCcccccHhHHHHhhhhhhcCCceeEEEeeecC-CCCcCceEEEEEecCCCccccceEEEEecccCcccCC
Q 003559 438 KGATVRQVSNVVAATDLTLLALAGIGLHHGKKLGFASCKRSS-GATEGINVLIEKKNLDGKWAYGLSCIEYTEFDKFGIT 516 (811)
Q Consensus 438 kyi~v~~vDN~La~vDP~~l~flG~~~~~~~~~~~~~vvRK~-~~~e~vGvL~~~r~~dGk~~~~~~vVEYsEl~~~~~~ 516 (811)
+++.|.+-|++. ..| +-.++-++...++++.+.+ .+.+ .....-|++.. ..+|+ ++++.|=|... .
T Consensus 130 d~~lVl~gD~l~-~~d--l~~ll~~h~~~~~~~tl~~-~~~~~~~~~~yG~v~~--d~~~~------V~~~~EKp~~~-~ 196 (425)
T PRK00725 130 KYVVILAGDHIY-KMD--YSRMLADHVESGADCTVAC-LEVPREEASAFGVMAV--DENDR------ITAFVEKPANP-P 196 (425)
T ss_pred CEEEEecCCeEe-ccC--HHHHHHHHHHcCCCEEEEE-EecchhhcccceEEEE--CCCCC------EEEEEECCCCc-c
Confidence 789999999853 333 3344556666677766664 2221 12234678754 12444 44555533221 0
Q ss_pred CCCCCCCCcccccccceeeeeEeHHHHHhhhc
Q 003559 517 RGPFSSNGLQADFPANTNILYVDLASAELVGS 548 (811)
Q Consensus 517 ~~~~~dg~l~s~f~~Ninn~~fsL~~L~~vl~ 548 (811)
.. ..... .+-.|+...+|+-+.|.+.+.
T Consensus 197 ~~--~~~~~--~~l~n~GIYi~~~~~L~~~L~ 224 (425)
T PRK00725 197 AM--PGDPD--KSLASMGIYVFNADYLYELLE 224 (425)
T ss_pred cc--ccCcc--ceEEEeeEEEEeHHHHHHHHH
Confidence 00 00100 133599999999999877664
No 39
>PF00483 NTP_transferase: Nucleotidyl transferase This Prosite entry is only a sub-family of the Pfam entry.; InterPro: IPR005835 Nucleotidyl transferases transfer nucleotides from one compound to another. This domain is found in a number of enzymes that transfer nucleotides onto phosphosugars.; GO: 0016779 nucleotidyltransferase activity, 0009058 biosynthetic process; PDB: 1YP2_C 1YP4_D 1YP3_B 1H5S_D 1H5R_C 1H5T_C 2E3D_B 1JYL_C 1JYK_A 1MP5_C ....
Probab=96.97 E-value=0.0042 Score=64.27 Aligned_cols=185 Identities=16% Similarity=0.172 Sum_probs=110.4
Q ss_pred EEecCCccccCC---CCCCCCCceeeccccCCCCC-cchHHHHHHHHHHHHHhHhhcCCcccceEEEecCCCCCchHHHH
Q 003559 292 IYPLGGSADRLG---LVDHETGECLPAAMLPYCGR-TLLEGLIRDLQAREFLYFKLYGKQCITPVAIMTSSAKNNHERIT 367 (811)
Q Consensus 292 VlLAGGlGTRLG---~~~pKgg~~lpV~l~p~sgk-TlLql~~e~I~~lq~La~~~~g~~~~IPl~IMTS~~~~Th~~T~ 367 (811)
|+||||.||||. ...||. ++|+. |+ +++++.++++... | ..=.++|.+.. ..+...
T Consensus 3 vIla~G~GtRl~plt~~~pK~--ll~i~-----g~~pli~~~l~~l~~~--------g--~~~ii~V~~~~---~~~~i~ 62 (248)
T PF00483_consen 3 VILAGGKGTRLRPLTDTIPKP--LLPIG-----GKYPLIDYVLENLANA--------G--IKEIIVVVNGY---KEEQIE 62 (248)
T ss_dssp EEEEESCCGGGTTTTTTSSGG--GSEET-----TEEEHHHHHHHHHHHT--------T--CSEEEEEEETT---THHHHH
T ss_pred EEECCCCCccCchhhhccccc--cceec-----CCCcchhhhhhhhccc--------C--CceEEEEEeec---cccccc
Confidence 567999999997 678998 99884 66 9999999988763 3 33345666655 677888
Q ss_pred HHHHHhCCCCCCCCceEEEecCCeeeEecCCCcccccCCCCccccCCCCcHHHHHHHhcCchHHHHHcC-ceEEEEEeCC
Q 003559 368 SLCERLRWFGRGQSSFQLFEQPLVPAVDAEDGQWLVMRPFAPVCKPGGHGAIWKLAHDKGIFKWFHDNG-RKGATVRQVS 446 (811)
Q Consensus 368 ~fle~n~yFGl~~~qV~~F~Q~~vP~l~~~dgki~l~~~~~l~~~P~GhGdIy~aL~~sGlLd~l~~~G-ikyi~v~~vD 446 (811)
+++++...+++ +|.+..|+ .|.|.|+-...+ .+.+.... -+++.|.+.|
T Consensus 63 ~~~~~~~~~~~---~i~~i~~~----------------------~~~Gta~al~~a-----~~~i~~~~~~~~~lv~~gD 112 (248)
T PF00483_consen 63 EHLGSGYKFGV---KIEYIVQP----------------------EPLGTAGALLQA-----LDFIEEEDDDEDFLVLNGD 112 (248)
T ss_dssp HHHTTSGGGTE---EEEEEEES----------------------SSSCHHHHHHHT-----HHHHTTSEE-SEEEEETTE
T ss_pred ccccccccccc---cceeeecc----------------------cccchhHHHHHH-----HHHhhhccccceEEEEecc
Confidence 99887665552 23322222 112444433322 12222222 3579999999
Q ss_pred CCcccccHhHHHHhhhhhhcCCceeEEEeeecCCCCcCceEEEEEecCCCccccceEEEEecccCcccCCCCCCCCCCcc
Q 003559 447 NVVAATDLTLLALAGIGLHHGKKLGFASCKRSSGATEGINVLIEKKNLDGKWAYGLSCIEYTEFDKFGITRGPFSSNGLQ 526 (811)
Q Consensus 447 N~La~vDP~~l~flG~~~~~~~~~~~~~vvRK~~~~e~vGvL~~~r~~dGk~~~~~~vVEYsEl~~~~~~~~~~~dg~l~ 526 (811)
++.-. | +..++-.+...+.++.+.+.........+-|++.. ..+|+ |++.-|=|....+ +
T Consensus 113 ~i~~~-~--~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~g~v~~--d~~~~------V~~~~EKP~~~~~-------~-- 172 (248)
T PF00483_consen 113 IIFDD-D--LQDMLEFHRESNADGTVTLLVVPVEDPSRYGVVEV--DEDGR------VIRIVEKPDNPNA-------S-- 172 (248)
T ss_dssp EEEST-T--HHHHHHHHHHHSSCESEEEEEEESSGGGGSEEEEE--ETTSE------EEEEEESCSSHSH-------S--
T ss_pred ccccc-h--hhhHHHhhhccccccccccccccccccccceeeee--cccee------EEEEeccCccccc-------c--
Confidence 85544 2 33456777777776544432333333445667654 24454 5555444433200 0
Q ss_pred cccccceeeeeEeHHHHHhhhc
Q 003559 527 ADFPANTNILYVDLASAELVGS 548 (811)
Q Consensus 527 s~f~~Ninn~~fsL~~L~~vl~ 548 (811)
-..|+...+|+-+.+..+++
T Consensus 173 --~~~~~G~Y~~~~~~~~~~~~ 192 (248)
T PF00483_consen 173 --NLINTGIYIFKPEIFDFLLE 192 (248)
T ss_dssp --SEEEEEEEEEETHHHHHHHH
T ss_pred --eeccCceEEEcchHHHHHhh
Confidence 12499999999998887753
No 40
>cd02538 G1P_TT_short G1P_TT_short is the short form of glucose-1-phosphate thymidylyltransferase. This family is the short form of glucose-1-phosphate thymidylyltransferase. Glucose-1-phosphate thymidylyltransferase catalyses the formation of dTDP-glucose, from dTTP and glucose 1-phosphate. It is the first enzyme in the biosynthesis of dTDP-L-rhamnose, a cell wall constituent and a feedback inhibitor of the enzyme.There are two forms of Glucose-1-phosphate thymidylyltransferase in bacteria and archeae; short form and long form. The homotetrameric, feedback inhibited short form is found in numerous bacterial species that produce dTDP-L-rhamnose. The long form, which has an extra 50 amino acids c-terminal, is found in many species for which it serves as a sugar-activating enzyme for antibiotic biosynthesis and or other, unknown pathways, and in which dTDP-L-rhamnose is not necessarily produced.
Probab=96.92 E-value=0.025 Score=58.88 Aligned_cols=176 Identities=16% Similarity=0.128 Sum_probs=99.8
Q ss_pred EEEEecCCccccCCC---CCCCCCceeeccccCCCCCcchHHHHHHHHHHHHHhHhhcCCcccceEEEecCCCCCchHHH
Q 003559 290 GEIYPLGGSADRLGL---VDHETGECLPAAMLPYCGRTLLEGLIRDLQAREFLYFKLYGKQCITPVAIMTSSAKNNHERI 366 (811)
Q Consensus 290 avVlLAGGlGTRLG~---~~pKgg~~lpV~l~p~sgkTlLql~~e~I~~lq~La~~~~g~~~~IPl~IMTS~~~~Th~~T 366 (811)
-.|+||||.||||+- ..||. ++|+ .|+++++..++.+.+. | .-.++|.++. ...+..
T Consensus 2 ~~iIlAaG~gtRl~plt~~~pK~--llpv-----~~~pli~~~l~~l~~~--------g---i~~i~vv~~~--~~~~~~ 61 (240)
T cd02538 2 KGIILAGGSGTRLYPLTKVVSKQ--LLPV-----YDKPMIYYPLSTLMLA--------G---IREILIISTP--EDLPLF 61 (240)
T ss_pred eEEEEcCcCcccCCccccCCCce--eeEE-----CCEEhHHHHHHHHHHC--------C---CCEEEEEeCc--chHHHH
Confidence 368999999999975 78999 9988 4899999998877542 3 2356677775 345677
Q ss_pred HHHHHHhCCCCCCCCceEEEecCCeeeEecCCCcccccCCCCccccCCCCcH-HHHHHHhcCchHHHHHcCceEEEEEeC
Q 003559 367 TSLCERLRWFGRGQSSFQLFEQPLVPAVDAEDGQWLVMRPFAPVCKPGGHGA-IWKLAHDKGIFKWFHDNGRKGATVRQV 445 (811)
Q Consensus 367 ~~fle~n~yFGl~~~qV~~F~Q~~vP~l~~~dgki~l~~~~~l~~~P~GhGd-Iy~aL~~sGlLd~l~~~Gikyi~v~~v 445 (811)
.++|.....+|+ +|.+-. ...|.|-|+ ++.++. .+ . + +...|.+.
T Consensus 62 ~~~l~~~~~~~~---~i~~~~----------------------~~~~~G~~~al~~a~~---~~----~-~-~~~lv~~g 107 (240)
T cd02538 62 KELLGDGSDLGI---RITYAV----------------------QPKPGGLAQAFIIGEE---FI----G-D-DPVCLILG 107 (240)
T ss_pred HHHHhcccccCc---eEEEee----------------------CCCCCCHHHHHHHHHH---hc----C-C-CCEEEEEC
Confidence 888876444443 121100 112445544 332221 11 1 1 44566688
Q ss_pred CCCcccccHhHHHHhhhhhhcCCceeEEEeeecCCCCcCceEEEEEecCCCccccceEEEEecccCcccCCCCCCCCCCc
Q 003559 446 SNVVAATDLTLLALAGIGLHHGKKLGFASCKRSSGATEGINVLIEKKNLDGKWAYGLSCIEYTEFDKFGITRGPFSSNGL 525 (811)
Q Consensus 446 DN~La~vDP~~l~flG~~~~~~~~~~~~~vvRK~~~~e~vGvL~~~r~~dGk~~~~~~vVEYsEl~~~~~~~~~~~dg~l 525 (811)
|+++...| +-.++-.+...+.++.+.+ .+... .+.-|++.. ..+|+ ++++.|=|... ..
T Consensus 108 D~~~~~~~--~~~~~~~~~~~~~~~~~~~-~~~~~-~~~~g~v~~--d~~g~------v~~~~ekp~~~-------~~-- 166 (240)
T cd02538 108 DNIFYGQG--LSPILQRAAAQKEGATVFG-YEVND-PERYGVVEF--DENGR------VLSIEEKPKKP-------KS-- 166 (240)
T ss_pred CEEEccHH--HHHHHHHHHhcCCCcEEEE-EECCc-hhcCceEEe--cCCCc------EEEEEECCCCC-------CC--
Confidence 88754432 2234444555566666554 33222 234567653 23454 44444322211 00
Q ss_pred ccccccceeeeeEeHHHH
Q 003559 526 QADFPANTNILYVDLASA 543 (811)
Q Consensus 526 ~s~f~~Ninn~~fsL~~L 543 (811)
...|+..++|+-+.+
T Consensus 167 ---~~~~~Giyi~~~~~l 181 (240)
T cd02538 167 ---NYAVTGLYFYDNDVF 181 (240)
T ss_pred ---CeEEEEEEEECHHHH
Confidence 125899999998766
No 41
>cd06422 NTP_transferase_like_1 NTP_transferase_like_1 is a member of the nucleotidyl transferase family. This is a subfamily of nucleotidyl transferases. Nucleotidyl transferases transfer nucleotides onto phosphosugars. The activated sugars are precursors for synthesis of lipopolysaccharide, glycolipids and polysaccharides. Other subfamilies of nucleotidyl transferases include Alpha-D-Glucose-1-Phosphate Cytidylyltransferase, Mannose-1-phosphate guanyltransferase, and Glucose-1-phosphate thymidylyltransferase.
Probab=96.91 E-value=0.043 Score=56.20 Aligned_cols=66 Identities=20% Similarity=0.338 Sum_probs=49.8
Q ss_pred EEEecCCccccCCC---CCCCCCceeeccccCCCCCcchHHHHHHHHHHHHHhHhhcCCcccceEEEecCCCCCchHHHH
Q 003559 291 EIYPLGGSADRLGL---VDHETGECLPAAMLPYCGRTLLEGLIRDLQAREFLYFKLYGKQCITPVAIMTSSAKNNHERIT 367 (811)
Q Consensus 291 vVlLAGGlGTRLG~---~~pKgg~~lpV~l~p~sgkTlLql~~e~I~~lq~La~~~~g~~~~IPl~IMTS~~~~Th~~T~ 367 (811)
.|+||||.||||+- ..||. ++|+ .|+++++..++.+.+. | .--++|.|.. ..+...
T Consensus 2 aiIlaaG~g~Rl~plt~~~pK~--llpi-----~g~~li~~~l~~l~~~--------g---i~~i~iv~~~---~~~~i~ 60 (221)
T cd06422 2 AMILAAGLGTRMRPLTDTRPKP--LVPV-----AGKPLIDHALDRLAAA--------G---IRRIVVNTHH---LADQIE 60 (221)
T ss_pred EEEEcCCCCCccccccCCCCCc--eeeE-----CCEEHHHHHHHHHHHC--------C---CCEEEEEccC---CHHHHH
Confidence 47899999999975 68999 9988 5789999999888653 3 2234566665 788888
Q ss_pred HHHHHhCCCCC
Q 003559 368 SLCERLRWFGR 378 (811)
Q Consensus 368 ~fle~n~yFGl 378 (811)
+++.. .++|+
T Consensus 61 ~~~~~-~~~~~ 70 (221)
T cd06422 61 AHLGD-SRFGL 70 (221)
T ss_pred HHHhc-ccCCc
Confidence 88876 44453
No 42
>cd06425 M1P_guanylylT_B_like_N N-terminal domain of the M1P-guanylyltransferase B-isoform like proteins. GDP-mannose pyrophosphorylase (GTP: alpha-d-mannose-1-phosphate guanyltransferase) catalyzes the formation of GDP-d-mannose from GTP and alpha-d-mannose-1-Phosphate. It contains an N-terminal catalytic domain and a C-terminal Lefthanded-beta-Helix fold domain. GDP-d-mannose is the activated form of mannose for formation of cell wall lipoarabinomannan and various mannose-containing glycolipids and polysaccharides. The function of GDP-mannose pyrophosphorylase is essential for cell wall integrity, morphogenesis and viability. Repression of GDP-mannose pyrophosphorylase in yeast leads to phenotypes, such as cell lysis, defective cell wall, and failure of polarized growth and cell separation.
Probab=96.79 E-value=0.056 Score=55.99 Aligned_cols=179 Identities=15% Similarity=0.216 Sum_probs=104.0
Q ss_pred EEEecCCccccCCC---CCCCCCceeeccccCCCCCcchHHHHHHHHHHHHHhHhhcCCcccceEEEecCCCCCchHHHH
Q 003559 291 EIYPLGGSADRLGL---VDHETGECLPAAMLPYCGRTLLEGLIRDLQAREFLYFKLYGKQCITPVAIMTSSAKNNHERIT 367 (811)
Q Consensus 291 vVlLAGGlGTRLG~---~~pKgg~~lpV~l~p~sgkTlLql~~e~I~~lq~La~~~~g~~~~IPl~IMTS~~~~Th~~T~ 367 (811)
.|+||||.||||+- ..||. ++|+ .|+++++..++.+... | .-.++|.|.. .++.+.
T Consensus 3 ~iIlAaG~g~R~~~lt~~~pK~--llpv-----~g~pli~~~l~~l~~~--------g---~~~v~iv~~~---~~~~~~ 61 (233)
T cd06425 3 ALILVGGYGTRLRPLTLTVPKP--LVEF-----CNKPMIEHQIEALAKA--------G---VKEIILAVNY---RPEDMV 61 (233)
T ss_pred EEEecCCCccccCccccCCCCc--cCeE-----CCcchHHHHHHHHHHC--------C---CcEEEEEeee---CHHHHH
Confidence 58899999999974 68998 8887 5789999999887653 3 2246788886 677888
Q ss_pred HHHHHhC-CCCCCCCceEEEecCCeeeEecCCCcccccCCCCccccCCCCcHHHHHHHhcCchHHHHHcCceEEEEEeCC
Q 003559 368 SLCERLR-WFGRGQSSFQLFEQPLVPAVDAEDGQWLVMRPFAPVCKPGGHGAIWKLAHDKGIFKWFHDNGRKGATVRQVS 446 (811)
Q Consensus 368 ~fle~n~-yFGl~~~qV~~F~Q~~vP~l~~~dgki~l~~~~~l~~~P~GhGdIy~aL~~sGlLd~l~~~Gikyi~v~~vD 446 (811)
+++.+.. .+|+ ++. + . ....|.|-|+-..... +.+ ...-+-+.|.+.|
T Consensus 62 ~~l~~~~~~~~~---~i~-~-----------------~----~~~~~~G~~~al~~a~-----~~~-~~~~~~~lv~~~D 110 (233)
T cd06425 62 PFLKEYEKKLGI---KIT-F-----------------S----IETEPLGTAGPLALAR-----DLL-GDDDEPFFVLNSD 110 (233)
T ss_pred HHHhcccccCCe---EEE-e-----------------c----cCCCCCccHHHHHHHH-----HHh-ccCCCCEEEEeCC
Confidence 8887531 1222 111 0 0 0123556544322221 122 2211235666777
Q ss_pred CCcccccHhHHHHhhhhhhcCCceeEEEeeecCCCCcCceEEEEEecC-CCccccceEEEEecccCcccCCCCCCCCCCc
Q 003559 447 NVVAATDLTLLALAGIGLHHGKKLGFASCKRSSGATEGINVLIEKKNL-DGKWAYGLSCIEYTEFDKFGITRGPFSSNGL 525 (811)
Q Consensus 447 N~La~vDP~~l~flG~~~~~~~~~~~~~vvRK~~~~e~vGvL~~~r~~-dGk~~~~~~vVEYsEl~~~~~~~~~~~dg~l 525 (811)
++. ..| +-.++-++...+++..+.+ .+... ..+-|++.. .. +|+ ++++.|=|... .
T Consensus 111 ~~~-~~~--~~~~~~~~~~~~~~~~~~~-~~~~~-~~~~g~v~~--d~~~~~------v~~~~ekp~~~-------~--- 167 (233)
T cd06425 111 VIC-DFP--LAELLDFHKKHGAEGTILV-TKVED-PSKYGVVVH--DENTGR------IERFVEKPKVF-------V--- 167 (233)
T ss_pred Eee-CCC--HHHHHHHHHHcCCCEEEEE-EEcCC-ccccCeEEE--cCCCCE------EEEEEECCCCC-------C---
Confidence 653 233 3345666666777766664 44332 345677754 12 343 66776543331 0
Q ss_pred ccccccceeeeeEeHHHHHhh
Q 003559 526 QADFPANTNILYVDLASAELV 546 (811)
Q Consensus 526 ~s~f~~Ninn~~fsL~~L~~v 546 (811)
+ ...|+..++|+-+.++.+
T Consensus 168 -~-~~~~~Giyi~~~~~l~~l 186 (233)
T cd06425 168 -G-NKINAGIYILNPSVLDRI 186 (233)
T ss_pred -C-CEEEEEEEEECHHHHHhc
Confidence 1 125999999998888554
No 43
>TIGR01208 rmlA_long glucose-1-phosphate thymidylylransferase, long form. Alternate name: dTDP-D-glucose synthase
Probab=96.77 E-value=0.06 Score=59.52 Aligned_cols=176 Identities=18% Similarity=0.184 Sum_probs=101.0
Q ss_pred EEEecCCccccCC---CCCCCCCceeeccccCCCCCcchHHHHHHHHHHHHHhHhhcCCcccceEEEecCCCCCchHHHH
Q 003559 291 EIYPLGGSADRLG---LVDHETGECLPAAMLPYCGRTLLEGLIRDLQAREFLYFKLYGKQCITPVAIMTSSAKNNHERIT 367 (811)
Q Consensus 291 vVlLAGGlGTRLG---~~~pKgg~~lpV~l~p~sgkTlLql~~e~I~~lq~La~~~~g~~~~IPl~IMTS~~~~Th~~T~ 367 (811)
.|+||||.||||+ ...||. ++|+ .|++++++.++.+... | .-.++|+|+. ...+...
T Consensus 2 aiIlAaG~gtRl~plt~~~pK~--l~pv-----~g~pli~~~l~~l~~~--------g---i~~i~vv~~~--~~~~~i~ 61 (353)
T TIGR01208 2 ALILAAGKGTRLRPLTFTRPKQ--LIPV-----ANKPILQYAIEDLAEA--------G---ITDIGIVVGP--VTGEEIK 61 (353)
T ss_pred EEEECCcCcCccCccccCCCcc--ccEE-----CCEeHHHHHHHHHHHC--------C---CCEEEEEeCC--CCHHHHH
Confidence 4789999999997 478999 9887 5889999988877542 3 2356788887 4778888
Q ss_pred HHHHHhCCCCCCCCceEEEecCCeeeEecCCCcccccCCCCccccCCCCcHHHHHHHhcCchHHHHHcCceEEEEEeCCC
Q 003559 368 SLCERLRWFGRGQSSFQLFEQPLVPAVDAEDGQWLVMRPFAPVCKPGGHGAIWKLAHDKGIFKWFHDNGRKGATVRQVSN 447 (811)
Q Consensus 368 ~fle~n~yFGl~~~qV~~F~Q~~vP~l~~~dgki~l~~~~~l~~~P~GhGdIy~aL~~sGlLd~l~~~Gikyi~v~~vDN 447 (811)
++|.+...||+ ++.+..|. .|.|-++-..+... .+. + +-+.+.+.|+
T Consensus 62 ~~~~~~~~~~~---~~~~~~~~----------------------~~~G~~~al~~a~~-----~l~--~-~~~li~~gD~ 108 (353)
T TIGR01208 62 EIVGEGERFGA---KITYIVQG----------------------EPLGLAHAVYTARD-----FLG--D-DDFVVYLGDN 108 (353)
T ss_pred HHHhcccccCc---eEEEEECC----------------------CCCCHHHHHHHHHH-----hcC--C-CCEEEEECCe
Confidence 88887555553 23222221 24555543333221 121 1 2345566788
Q ss_pred CcccccHhHHHHhhhhhhcCCceeEEEeeecCCCCcCceEEEEEecCCCccccceEEEEecccCcccCCCCCCCCCCccc
Q 003559 448 VVAATDLTLLALAGIGLHHGKKLGFASCKRSSGATEGINVLIEKKNLDGKWAYGLSCIEYTEFDKFGITRGPFSSNGLQA 527 (811)
Q Consensus 448 ~La~vDP~~l~flG~~~~~~~~~~~~~vvRK~~~~e~vGvL~~~r~~dGk~~~~~~vVEYsEl~~~~~~~~~~~dg~l~s 527 (811)
++ ..| +-.++-.+...+++..+.+ .+...+ ..-|++.. .++. .++++.|-|... . +
T Consensus 109 ~~-~~~--l~~l~~~~~~~~~d~ti~~-~~~~~~-~~~g~~~~---~~~~-----~v~~~~ekp~~~-------~-~--- 164 (353)
T TIGR01208 109 LI-QDG--ISRFVKSFEEKDYDALILL-TKVRDP-TAFGVAVL---EDGK-----RILKLVEKPKEP-------P-S--- 164 (353)
T ss_pred ec-Ccc--HHHHHHHHHhcCCCcEEEE-EECCCh-hhCeEEEE---cCCC-----cEEEEEECCCCC-------C-c---
Confidence 65 332 3344555556676765554 333333 23466543 3332 234444333221 0 0
Q ss_pred ccccceeeeeEeHHHHH
Q 003559 528 DFPANTNILYVDLASAE 544 (811)
Q Consensus 528 ~f~~Ninn~~fsL~~L~ 544 (811)
-..|+..++|+-.+++
T Consensus 165 -~~~~~Giy~~~~~l~~ 180 (353)
T TIGR01208 165 -NLAVVGLYMFRPLIFE 180 (353)
T ss_pred -cceEEEEEEECHHHHH
Confidence 1248899999984443
No 44
>cd02524 G1P_cytidylyltransferase G1P_cytidylyltransferase catalyzes the production of CDP-D-Glucose. Alpha-D-Glucose-1-phosphate Cytidylyltransferase catalyzes the production of CDP-D-Glucose from alpha-D-Glucose-1-phosphate and MgCTP as substrate. CDP-D-Glucose is the precursor for synthesizing four of the five naturally occurring 3,6-dideoxy sugars-abequose (3,6-dideoxy-D-Xylo-hexose), ascarylose (3,6-dideoxy-L-arabino-hexose), paratose (3,6-dideoxy-D-ribohexose), and tyvelose (3,6-dideoxy-D-arabino-hexose. Deoxysugars are ubiquitous in nature where they function in a variety of biological processes, including cell adhesion, immune response, determination of ABO blood groups, fertilization, antibiotic function, and microbial pathogenicity.
Probab=96.73 E-value=0.074 Score=56.03 Aligned_cols=189 Identities=12% Similarity=0.096 Sum_probs=101.5
Q ss_pred EEEecCCccccCC---CCCCCCCceeeccccCCCCCcchHHHHHHHHHHHHHhHhhcCCcccceEEEecCCCCCchHHHH
Q 003559 291 EIYPLGGSADRLG---LVDHETGECLPAAMLPYCGRTLLEGLIRDLQAREFLYFKLYGKQCITPVAIMTSSAKNNHERIT 367 (811)
Q Consensus 291 vVlLAGGlGTRLG---~~~pKgg~~lpV~l~p~sgkTlLql~~e~I~~lq~La~~~~g~~~~IPl~IMTS~~~~Th~~T~ 367 (811)
+|+||||.||||. ...||. ++|+ .|+++++..++.+.+. | .-.++|-++. ..+.+.
T Consensus 1 aiilaaG~g~Rl~plt~~~pK~--llpv-----~~~p~i~~~~~~~~~~--------g---i~~i~iv~~~---~~~~i~ 59 (253)
T cd02524 1 VVILAGGLGTRLSEETELKPKP--MVEI-----GGRPILWHIMKIYSHY--------G---HNDFILCLGY---KGHVIK 59 (253)
T ss_pred CEEEecCCccccCCccCCCCce--EEEE-----CCEEHHHHHHHHHHhC--------C---CceEEEECCC---CHHHHH
Confidence 3789999999997 468999 9998 5788998766666442 3 2246777776 678899
Q ss_pred HHHHHhCCCCCCCCceEEEecCCeeeEecCCCcccccCCCCc----cccCCCCcH-HHHHHHhcCchHHHHHcCceEEEE
Q 003559 368 SLCERLRWFGRGQSSFQLFEQPLVPAVDAEDGQWLVMRPFAP----VCKPGGHGA-IWKLAHDKGIFKWFHDNGRKGATV 442 (811)
Q Consensus 368 ~fle~n~yFGl~~~qV~~F~Q~~vP~l~~~dgki~l~~~~~l----~~~P~GhGd-Iy~aL~~sGlLd~l~~~Gikyi~v 442 (811)
+++++...+|. ++.+-.|..--.+...+ .+++.+ ...|-|.|+ ++.++. .+ ..+ +++.+
T Consensus 60 ~~~~~~~~~~~---~~~~~~~~~~~~~~~~~-----~~~~~~~~~~~~~~~~t~~al~~a~~------~~-~~~-~~~lv 123 (253)
T cd02524 60 EYFLNYFLHNS---DVTIDLGTNRIELHNSD-----IEDWKVTLVDTGLNTMTGGRLKRVRR------YL-GDD-ETFML 123 (253)
T ss_pred HHHHhhhhhcC---ceeEeecccceeeeccc-----ccccceeecccCcccccHHHHHHHHH------hc-CCC-CeEEE
Confidence 99988665543 22221111000000000 001111 122455554 443331 11 111 78999
Q ss_pred EeCCCCcccccHhHHHHhhhhhhcCCceeEEEeeecCCCCcCceEEEEEecCCCccccceEEEEecccCcccCCCCCCCC
Q 003559 443 RQVSNVVAATDLTLLALAGIGLHHGKKLGFASCKRSSGATEGINVLIEKKNLDGKWAYGLSCIEYTEFDKFGITRGPFSS 522 (811)
Q Consensus 443 ~~vDN~La~vDP~~l~flG~~~~~~~~~~~~~vvRK~~~~e~vGvL~~~r~~dGk~~~~~~vVEYsEl~~~~~~~~~~~d 522 (811)
.+-|++. ..|- -.++-++...++++.+.. ++ +...-|++.. ..+|+ ++++.+=+.. .
T Consensus 124 ~~gD~i~-~~dl--~~ll~~h~~~~~~~tl~~-~~---~~~~~g~v~~--d~~g~------V~~~~ekp~~--------~ 180 (253)
T cd02524 124 TYGDGVS-DVNI--NALIEFHRSHGKLATVTA-VH---PPGRFGELDL--DDDGQ------VTSFTEKPQG--------D 180 (253)
T ss_pred EcCCEEE-CCCH--HHHHHHHHHcCCCEEEEE-ec---CCCcccEEEE--CCCCC------EEEEEECCCC--------C
Confidence 9999874 3332 233444555566665543 33 2234566643 23455 4444432211 0
Q ss_pred CCcccccccceeeeeEeHHHHH
Q 003559 523 NGLQADFPANTNILYVDLASAE 544 (811)
Q Consensus 523 g~l~s~f~~Ninn~~fsL~~L~ 544 (811)
. -..|+..++|+-+.++
T Consensus 181 ~-----~~i~~Giyi~~~~l~~ 197 (253)
T cd02524 181 G-----GWINGGFFVLEPEVFD 197 (253)
T ss_pred C-----ceEEEEEEEECHHHHH
Confidence 0 1247888888866653
No 45
>cd02517 CMP-KDO-Synthetase CMP-KDO synthetase catalyzes the activation of KDO which is an essential component of the lipopolysaccharide. CMP-KDO Synthetase: 3-Deoxy-D-manno-octulosonate cytidylyltransferase (CMP-KDO synthetase) catalyzes the conversion of CTP and 3-deoxy-D-manno-octulosonate into CMP-3-deoxy-D-manno-octulosonate (CMP-KDO) and pyrophosphate. KDO is an essential component of the lipopolysaccharide found in the outer surface of gram-negative eubacteria. It is also a constituent of the capsular polysaccharides of some gram-negative eubacteria. Its presence in the cell wall polysaccharides of green algae and plant were also discovered. However, they have not been found in yeast and animals. The absence of the enzyme in mammalian cells makes it an attractive target molecule for drug design.
Probab=96.73 E-value=0.14 Score=53.06 Aligned_cols=185 Identities=13% Similarity=0.146 Sum_probs=99.8
Q ss_pred cEEEEEecCCccccCCCCCCCCCceeeccccCCCCCcchHHHHHHHHHHHHHhHhhcCCcccceEEEecCCCCCchHHHH
Q 003559 288 ELGEIYPLGGSADRLGLVDHETGECLPAAMLPYCGRTLLEGLIRDLQAREFLYFKLYGKQCITPVAIMTSSAKNNHERIT 367 (811)
Q Consensus 288 kvavVlLAGGlGTRLG~~~pKgg~~lpV~l~p~sgkTlLql~~e~I~~lq~La~~~~g~~~~IPl~IMTS~~~~Th~~T~ 367 (811)
++..|+||||.|+||| ||. ++|+ .|++++++.++++.+.. | +.-++..+. ++.+.
T Consensus 1 ~~~~iIlA~g~s~R~~---~K~--l~~i-----~gkpll~~~l~~l~~~~-------~----i~~ivvv~~----~~~i~ 55 (239)
T cd02517 1 KVIVVIPARYASSRLP---GKP--LADI-----AGKPMIQHVYERAKKAK-------G----LDEVVVATD----DERIA 55 (239)
T ss_pred CEEEEEecCCCCCCCC---CCC--Cccc-----CCcCHHHHHHHHHHhCC-------C----CCEEEEECC----cHHHH
Confidence 4678999999999997 798 8876 69999999999887531 2 222333332 36777
Q ss_pred HHHHHhCCCCCCCCceEEEecCCeeeEecCCCcccccCCCCccccCCCCcHHHHHHHhcCchHHHHHcCceEEEEEeCCC
Q 003559 368 SLCERLRWFGRGQSSFQLFEQPLVPAVDAEDGQWLVMRPFAPVCKPGGHGAIWKLAHDKGIFKWFHDNGRKGATVRQVSN 447 (811)
Q Consensus 368 ~fle~n~yFGl~~~qV~~F~Q~~vP~l~~~dgki~l~~~~~l~~~P~GhGdIy~aL~~sGlLd~l~~~Gikyi~v~~vDN 447 (811)
+++.+ +| +.+..+ . ...+.|.|++..++.. + ....+++.+.+.|+
T Consensus 56 ~~~~~---~~-----~~~~~~--------~------------~~~~~gt~~~~~~~~~------~-~~~~d~vlv~~gD~ 100 (239)
T cd02517 56 DAVES---FG-----GKVVMT--------S------------PDHPSGTDRIAEVAEK------L-DADDDIVVNVQGDE 100 (239)
T ss_pred HHHHH---cC-----CEEEEc--------C------------cccCchhHHHHHHHHh------c-CCCCCEEEEecCCC
Confidence 77764 22 111111 0 0124566666665532 1 11247899999999
Q ss_pred CcccccHhHHHHhhhhhhc-CCceeEEEeeecCCCC----cC-ceEEEEEecCCCccccceEEEEecccCcccCCCCCCC
Q 003559 448 VVAATDLTLLALAGIGLHH-GKKLGFASCKRSSGAT----EG-INVLIEKKNLDGKWAYGLSCIEYTEFDKFGITRGPFS 521 (811)
Q Consensus 448 ~La~vDP~~l~flG~~~~~-~~~~~~~~vvRK~~~~----e~-vGvL~~~r~~dGk~~~~~~vVEYsEl~~~~~~~~~~~ 521 (811)
++...+ .+-.++-.+... +.++.+.+ .+...+. .+ .+++.. .||. +.+..+-+... +++..
T Consensus 101 Pli~~~-~l~~l~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~v~~~---~~~~------v~~~~~~~~~~--~~~~~ 167 (239)
T cd02517 101 PLIPPE-MIDQVVAALKDDPGVDMATLA-TPISDEEELFNPNVVKVVLD---KDGY------ALYFSRSPIPY--PRDSS 167 (239)
T ss_pred CCCCHH-HHHHHHHHHHhCCCCCEEEEE-EEcCCHHHccCCCCCEEEEC---CCCC------EEEecCCCCCC--CCCCC
Confidence 887641 111223222222 34444443 3322222 12 344432 4554 44555422110 01111
Q ss_pred CCCcccccccceeeeeEeHHHHHhhhc
Q 003559 522 SNGLQADFPANTNILYVDLASAELVGS 548 (811)
Q Consensus 522 dg~l~s~f~~Ninn~~fsL~~L~~vl~ 548 (811)
+.. + .-.|+....|+-+.++.+.+
T Consensus 168 ~~~--~-~~~~~Giy~~~~~~~~~~~~ 191 (239)
T cd02517 168 EDF--P-YYKHIGIYAYRRDFLLRFAA 191 (239)
T ss_pred CCC--c-eeEEEEEEEECHHHHHHHHh
Confidence 111 1 12499999999999887654
No 46
>cd06428 M1P_guanylylT_A_like_N N-terminal domain of M1P_guanylyl_A_ like proteins are likely to be a isoform of GDP-mannose pyrophosphorylase. N-terminal domain of the M1P-guanylyltransferase A-isoform like proteins: The proteins of this family are likely to be a isoform of GDP-mannose pyrophosphorylase. Their sequences are highly conserved with mannose-1-phosphate guanyltransferase, but generally about 40-60 bases longer. GDP-mannose pyrophosphorylase (GTP: alpha-d-mannose-1-phosphate guanyltransferase) catalyzes the formation of GDP-d-mannose from GTP and alpha-d-mannose-1-Phosphate. It contains an N-terminal catalytic domain that resembles a dinucleotide-binding Rossmann fold and a C-terminal LbH fold domain. GDP-d-mannose is the activated form of mannose for formation of cell wall lipoarabinomannan and various mannose-containing glycolipids and polysaccharides. The function of GDP-mannose pyrophosphorylase is essential for cell wall integrity, morphogenesis and viability. Repre
Probab=96.70 E-value=0.089 Score=55.49 Aligned_cols=181 Identities=12% Similarity=0.133 Sum_probs=102.5
Q ss_pred EEecCC--ccccCCC---CCCCCCceeeccccCCCCCcchHHHHHHHHHHHHHhHhhcCCcccceEEEecCCCCCchHHH
Q 003559 292 IYPLGG--SADRLGL---VDHETGECLPAAMLPYCGRTLLEGLIRDLQAREFLYFKLYGKQCITPVAIMTSSAKNNHERI 366 (811)
Q Consensus 292 VlLAGG--lGTRLG~---~~pKgg~~lpV~l~p~sgkTlLql~~e~I~~lq~La~~~~g~~~~IPl~IMTS~~~~Th~~T 366 (811)
|+|||| .||||.- ..||. ++|+ .|++++++.++.+..+ .| .--++|.+.. ..+..
T Consensus 2 iIla~G~~~GtRl~plt~~~PK~--llpv-----~g~plI~~~l~~l~~~-------~g---i~~i~iv~~~---~~~~i 61 (257)
T cd06428 2 VILVGGPQKGTRFRPLSLDVPKP--LFPV-----AGKPMIHHHIEACAKV-------PD---LKEVLLIGFY---PESVF 61 (257)
T ss_pred EEEccCCCCCcccCCccCCCCcc--cCeE-----CCeeHHHHHHHHHHhc-------CC---CcEEEEEecC---CHHHH
Confidence 677888 8999986 78999 9887 5789999988877653 13 1234566665 67788
Q ss_pred HHHHHHhC-CCCCCCCceEEEecCCeeeEecCCCcccccCCCCccccCCCCcHHHHHHHhcCchHHHHHcCceEEEEEeC
Q 003559 367 TSLCERLR-WFGRGQSSFQLFEQPLVPAVDAEDGQWLVMRPFAPVCKPGGHGAIWKLAHDKGIFKWFHDNGRKGATVRQV 445 (811)
Q Consensus 367 ~~fle~n~-yFGl~~~qV~~F~Q~~vP~l~~~dgki~l~~~~~l~~~P~GhGdIy~aL~~sGlLd~l~~~Gikyi~v~~v 445 (811)
.+++.+.. .+|+ .|.+..| ..|-|-|+-..... +.+....-+++.|.+.
T Consensus 62 ~~~l~~~~~~~~~---~i~~~~~----------------------~~~~Gt~~al~~a~-----~~l~~~~~~~~lv~~g 111 (257)
T cd06428 62 SDFISDAQQEFNV---PIRYLQE----------------------YKPLGTAGGLYHFR-----DQILAGNPSAFFVLNA 111 (257)
T ss_pred HHHHHhcccccCc---eEEEecC----------------------CccCCcHHHHHHHH-----HHhhccCCCCEEEEcC
Confidence 88887542 2332 2221111 12344444322221 2222223468889999
Q ss_pred CCCcccccHhHHHHhhhhhhcCCceeEEEeeecC-CCCcCceEEEEEec-CCCccccceEEEEecccCcccCCCCCCCCC
Q 003559 446 SNVVAATDLTLLALAGIGLHHGKKLGFASCKRSS-GATEGINVLIEKKN-LDGKWAYGLSCIEYTEFDKFGITRGPFSSN 523 (811)
Q Consensus 446 DN~La~vDP~~l~flG~~~~~~~~~~~~~vvRK~-~~~e~vGvL~~~r~-~dGk~~~~~~vVEYsEl~~~~~~~~~~~dg 523 (811)
|++. .+|. -.++-++...++++.+.+ .+.. .....-|++.. . .+|+ +.++.|=|... .
T Consensus 112 D~~~-~~dl--~~~~~~h~~~~~~~tl~~-~~~~~~~~~~yg~v~~--d~~~g~------v~~~~Ekp~~~-------~- 171 (257)
T cd06428 112 DVCC-DFPL--QELLEFHKKHGASGTILG-TEASREQASNYGCIVE--DPSTGE------VLHYVEKPETF-------V- 171 (257)
T ss_pred Ceec-CCCH--HHHHHHHHHcCCCEEEEE-EEccccccccccEEEE--eCCCCe------EEEEEeCCCCc-------c-
Confidence 9873 3442 234566666677766554 2221 11234577643 1 2344 44444422211 0
Q ss_pred CcccccccceeeeeEeHHHHHhh
Q 003559 524 GLQADFPANTNILYVDLASAELV 546 (811)
Q Consensus 524 ~l~s~f~~Ninn~~fsL~~L~~v 546 (811)
+ ...|+..++|+-+.+..+
T Consensus 172 ~----~~~~~Giyi~~~~~~~~i 190 (257)
T cd06428 172 S----DLINCGVYLFSPEIFDTI 190 (257)
T ss_pred c----ceEEEEEEEECHHHHHHH
Confidence 0 236999999998877543
No 47
>PRK14357 glmU bifunctional N-acetylglucosamine-1-phosphate uridyltransferase/glucosamine-1-phosphate acetyltransferase; Provisional
Probab=96.63 E-value=0.057 Score=61.49 Aligned_cols=176 Identities=13% Similarity=0.090 Sum_probs=101.4
Q ss_pred EEEecCCccccCCCCCCCCCceeeccccCCCCCcchHHHHHHHHHHHHHhHhhcCCcccceEEEecCCCCCchHHHHHHH
Q 003559 291 EIYPLGGSADRLGLVDHETGECLPAAMLPYCGRTLLEGLIRDLQAREFLYFKLYGKQCITPVAIMTSSAKNNHERITSLC 370 (811)
Q Consensus 291 vVlLAGGlGTRLG~~~pKgg~~lpV~l~p~sgkTlLql~~e~I~~lq~La~~~~g~~~~IPl~IMTS~~~~Th~~T~~fl 370 (811)
.|+||||.||||+...||- ++|+ .|++++++.++.+... + -.++|.|+. ..+...+++
T Consensus 3 avIlA~G~gtRl~~~~pK~--l~~v-----~gkpli~~~l~~l~~~--------~----~~i~vv~~~---~~~~i~~~~ 60 (448)
T PRK14357 3 ALVLAAGKGTRMKSKIPKV--LHKI-----SGKPMINWVIDTAKKV--------A----QKVGVVLGH---EAELVKKLL 60 (448)
T ss_pred EEEECCCCCccCCCCCCce--eeEE-----CCeeHHHHHHHHHHhc--------C----CcEEEEeCC---CHHHHHHhc
Confidence 5889999999999888998 9887 5899999998876542 2 135666665 345555554
Q ss_pred HHhCCCCCCCCceEEEecCCeeeEecCCCcccccCCCCccccCCCCcH-HHHHHHhcCchHHHHHcCceEEEEEeCCCCc
Q 003559 371 ERLRWFGRGQSSFQLFEQPLVPAVDAEDGQWLVMRPFAPVCKPGGHGA-IWKLAHDKGIFKWFHDNGRKGATVRQVSNVV 449 (811)
Q Consensus 371 e~n~yFGl~~~qV~~F~Q~~vP~l~~~dgki~l~~~~~l~~~P~GhGd-Iy~aL~~sGlLd~l~~~Gikyi~v~~vDN~L 449 (811)
.. .+.++.|+ .|.|-++ ++.++. .++ .-+++++.+.|+++
T Consensus 61 ~~---------~~~~~~~~----------------------~~~g~~~ai~~a~~---~l~-----~~~~vlv~~gD~p~ 101 (448)
T PRK14357 61 PE---------WVKIFLQE----------------------EQLGTAHAVMCARD---FIE-----PGDDLLILYGDVPL 101 (448)
T ss_pred cc---------ccEEEecC----------------------CCCChHHHHHHHHH---hcC-----cCCeEEEEeCCccc
Confidence 31 12223331 1224333 443332 121 13689999999986
Q ss_pred ccccHhHHHHhhhhhhcCCceeEEEeeecCCCCcCceEEEEEecCCCccccceEEEEecccCcccCCCCCCCCCCccccc
Q 003559 450 AATDLTLLALAGIGLHHGKKLGFASCKRSSGATEGINVLIEKKNLDGKWAYGLSCIEYTEFDKFGITRGPFSSNGLQADF 529 (811)
Q Consensus 450 a~vDP~~l~flG~~~~~~~~~~~~~vvRK~~~~e~vGvL~~~r~~dGk~~~~~~vVEYsEl~~~~~~~~~~~dg~l~s~f 529 (811)
...+ .+-.++-.+...++++.+.+ .+...+ ..-|++.. .||+ +..+|...-+... . .. +
T Consensus 102 i~~~-~i~~l~~~~~~~~~d~ti~~-~~~~~~-~~~g~v~~---d~g~----v~~~e~~~~~~~~-------~-~~---~ 160 (448)
T PRK14357 102 ISEN-TLKRLIEEHNRKGADVTILV-ADLEDP-TGYGRIIR---DGGK----YRIVEDKDAPEEE-------K-KI---K 160 (448)
T ss_pred CCHH-HHHHHHHHHHhcCCeEEEEE-EEcCCC-CCcEEEEE---cCCe----EEEEECCCCChHH-------h-cC---c
Confidence 5431 12123444445566665554 333323 23566643 3665 5566643221110 0 00 2
Q ss_pred ccceeeeeEeHHHHHhhhc
Q 003559 530 PANTNILYVDLASAELVGS 548 (811)
Q Consensus 530 ~~Ninn~~fsL~~L~~vl~ 548 (811)
-.|+...+|+-+.|.+.+.
T Consensus 161 ~~~~GiYv~~~~~l~~~~~ 179 (448)
T PRK14357 161 EINTGIYVFSGDFLLEVLP 179 (448)
T ss_pred EEEeEEEEEEHHHHHHHHH
Confidence 3599999999888877664
No 48
>TIGR02091 glgC glucose-1-phosphate adenylyltransferase. This enzyme, glucose-1-phosphate adenylyltransferase, is also called ADP-glucose pyrophosphorylase. The plant form is an alpha2,beta2 heterodimer, allosterically regulated in plants. Both subunits are homologous and included in this model. In bacteria, both homomeric forms of GlgC and more active heterodimers of GlgC and GlgD have been described. This model describes the GlgC subunit only. This enzyme appears in variants of glycogen synthesis pathways that use ADP-glucose, rather than UDP-glucose as in animals.
Probab=96.62 E-value=0.062 Score=59.44 Aligned_cols=196 Identities=12% Similarity=0.114 Sum_probs=106.6
Q ss_pred EEecCCccccCCC---CCCCCCceeeccccCCCCC-cchHHHHHHHHHHHHHhHhhcCCcccceEEEecCCCCCchHHHH
Q 003559 292 IYPLGGSADRLGL---VDHETGECLPAAMLPYCGR-TLLEGLIRDLQAREFLYFKLYGKQCITPVAIMTSSAKNNHERIT 367 (811)
Q Consensus 292 VlLAGGlGTRLG~---~~pKgg~~lpV~l~p~sgk-TlLql~~e~I~~lq~La~~~~g~~~~IPl~IMTS~~~~Th~~T~ 367 (811)
|+||||.||||+- +.||. ++|+ .|+ +++++.++.+... | .-.++|.|.. ..+...
T Consensus 2 iILAaG~gtRl~plt~~~pK~--llpv-----~g~~pli~~~l~~l~~~--------g---i~~i~iv~~~---~~~~i~ 60 (361)
T TIGR02091 2 MVLAGGRGSRLSPLTKRRAKP--AVPF-----GGKYRIIDFPLSNCINS--------G---IRRIGVLTQY---KSHSLN 60 (361)
T ss_pred EEeCCCCCCccchhhhCCccc--ccee-----cceeeEeeehhhhhhhc--------C---CceEEEEecc---ChHHHH
Confidence 7899999999983 68999 9988 578 7999998877653 3 2256888887 566788
Q ss_pred HHHHHhCCCCCCC---CceEEEecCCeeeEecCCCcccccCCCCccccCCCCcH-HHHHHHhcCchHHHHHcCceEEEEE
Q 003559 368 SLCERLRWFGRGQ---SSFQLFEQPLVPAVDAEDGQWLVMRPFAPVCKPGGHGA-IWKLAHDKGIFKWFHDNGRKGATVR 443 (811)
Q Consensus 368 ~fle~n~yFGl~~---~qV~~F~Q~~vP~l~~~dgki~l~~~~~l~~~P~GhGd-Iy~aL~~sGlLd~l~~~Gikyi~v~ 443 (811)
++|.+. +++.. ..+.++ |.. ....-...|.|.|+ ++.++. .+....-+++.|.
T Consensus 61 ~~~~~~--~~~~~~~~~~~~~~-~~~--------------~~~~~~~~~~Gt~~al~~a~~------~~~~~~~~~~lv~ 117 (361)
T TIGR02091 61 RHIQRG--WDFDGFIDGFVTLL-PAQ--------------QRESGTDWYQGTADAVYQNLD------LIEDYDPEYVLIL 117 (361)
T ss_pred HHHHhc--cCccCccCCCEEEe-CCc--------------ccCCCCccccCcHHHHHHHHH------HHHhcCCCEEEEe
Confidence 888752 23211 112111 000 00011223567655 333432 2222234678889
Q ss_pred eCCCCcccccHhHHHHhhhhhhcCCceeEEEeeecC-CCCcCceEEEEEecCCCccccceEEEEecccCcccCCCCCCCC
Q 003559 444 QVSNVVAATDLTLLALAGIGLHHGKKLGFASCKRSS-GATEGINVLIEKKNLDGKWAYGLSCIEYTEFDKFGITRGPFSS 522 (811)
Q Consensus 444 ~vDN~La~vDP~~l~flG~~~~~~~~~~~~~vvRK~-~~~e~vGvL~~~r~~dGk~~~~~~vVEYsEl~~~~~~~~~~~d 522 (811)
+.|++. ..| +..++-.+..++.++.+.+ .+.+ ......|++.. ..+|+ +.++.|=|... .....+
T Consensus 118 ~gD~l~-~~~--l~~~l~~~~~~~~~~ti~~-~~~~~~~~~~~g~v~~--d~~~~------v~~~~ekp~~~--~~~~~~ 183 (361)
T TIGR02091 118 SGDHIY-KMD--YEKMLDYHIESGADVTIAC-IPVPRKEASRFGVMQV--DEDGR------IVDFEEKPANP--PSIPGM 183 (361)
T ss_pred cCCEEE-cCC--HHHHHHHHHHcCCCEEEEE-EecChHhcccccEEEE--CCCCC------EEEEEECCCCc--cccccc
Confidence 999843 332 3233444444455544443 3322 12334677754 12343 45665433111 000000
Q ss_pred CCcccccccceeeeeEeHHHHHhhhc
Q 003559 523 NGLQADFPANTNILYVDLASAELVGS 548 (811)
Q Consensus 523 g~l~s~f~~Ninn~~fsL~~L~~vl~ 548 (811)
.. .+..|+..+.|+-+.+.+.+.
T Consensus 184 -~~--~~~~~~Giyi~~~~~l~~~l~ 206 (361)
T TIGR02091 184 -PD--FALASMGIYIFDKDVLKELLE 206 (361)
T ss_pred -cc--ccEEeeeEEEEcHHHHHHHHH
Confidence 11 134599999999988876654
No 49
>TIGR00454 conserved hypothetical protein TIGR00454. At this time this gene appears to be present only in Archea
Probab=96.62 E-value=0.0032 Score=64.06 Aligned_cols=61 Identities=21% Similarity=0.402 Sum_probs=47.9
Q ss_pred EEEEecCCccccCCCCCCCCCceeeccccCCCCCcchHHHHHHHHHHHHHhHhhcCCcccceEEEecCCCCCchHHHHHH
Q 003559 290 GEIYPLGGSADRLGLVDHETGECLPAAMLPYCGRTLLEGLIRDLQAREFLYFKLYGKQCITPVAIMTSSAKNNHERITSL 369 (811)
Q Consensus 290 avVlLAGGlGTRLG~~~pKgg~~lpV~l~p~sgkTlLql~~e~I~~lq~La~~~~g~~~~IPl~IMTS~~~~Th~~T~~f 369 (811)
..|+||||.|||||. .||. ++++ .|++++++.++.+... + .-.+++-|+. .++.|..+
T Consensus 2 ~aIILAgG~gsRmg~-~~K~--Ll~i-----~GkplI~~vi~~l~~~--------~---i~~I~Vv~~~---~~~~~~~~ 59 (183)
T TIGR00454 2 DALIMAGGKGTRLGG-VEKP--LIEV-----CGRCLIDHVLSPLLKS--------K---VNNIIIATSP---HTPKTEEY 59 (183)
T ss_pred eEEEECCccCccCCC-CCce--EeEE-----CCEEHHHHHHHHHHhC--------C---CCEEEEEeCC---CHHHHHHH
Confidence 458999999999985 7898 8887 6899999999888653 1 1246777886 67788888
Q ss_pred HHH
Q 003559 370 CER 372 (811)
Q Consensus 370 le~ 372 (811)
+++
T Consensus 60 l~~ 62 (183)
T TIGR00454 60 INS 62 (183)
T ss_pred Hhh
Confidence 865
No 50
>PRK13385 2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase; Provisional
Probab=96.56 E-value=0.0035 Score=65.16 Aligned_cols=65 Identities=15% Similarity=0.276 Sum_probs=48.7
Q ss_pred EEEEEecCCccccCCCCCCCCCceeeccccCCCCCcchHHHHHHHHHHHHHhHhhcCCcccceEEEecCCCCCchHHHHH
Q 003559 289 LGEIYPLGGSADRLGLVDHETGECLPAAMLPYCGRTLLEGLIRDLQAREFLYFKLYGKQCITPVAIMTSSAKNNHERITS 368 (811)
Q Consensus 289 vavVlLAGGlGTRLG~~~pKgg~~lpV~l~p~sgkTlLql~~e~I~~lq~La~~~~g~~~~IPl~IMTS~~~~Th~~T~~ 368 (811)
++.|+||||.|+|||.+.||- ++++ .|++++++.+++++... ..-.++|.|++ .......+
T Consensus 3 ~~~iIlAaG~g~R~g~~~~K~--l~~l-----~gkpll~~~i~~~~~~~----------~~~~ivVv~~~--~~~~~~~~ 63 (230)
T PRK13385 3 YELIFLAAGQGKRMNAPLNKM--WLDL-----VGEPIFIHALRPFLADN----------RCSKIIIVTQA--QERKHVQD 63 (230)
T ss_pred eEEEEECCeeccccCCCCCcc--eeEE-----CCeEHHHHHHHHHHcCC----------CCCEEEEEeCh--hhHHHHHH
Confidence 688999999999999888999 8887 69999999998876531 12356677766 34455556
Q ss_pred HHHH
Q 003559 369 LCER 372 (811)
Q Consensus 369 fle~ 372 (811)
++++
T Consensus 64 ~~~~ 67 (230)
T PRK13385 64 LMKQ 67 (230)
T ss_pred HHHh
Confidence 6665
No 51
>TIGR02623 G1P_cyt_trans glucose-1-phosphate cytidylyltransferase. Members of this family are the enzyme glucose-1-phosphate cytidylyltransferase, also called CDP-glucose pyrophosphorylase, the product of the rfbF gene.
Probab=96.40 E-value=0.18 Score=53.51 Aligned_cols=193 Identities=13% Similarity=0.123 Sum_probs=103.7
Q ss_pred EEEecCCccccCCC---CCCCCCceeeccccCCCCCcchHHHHHHHHHHHHHhHhhcCCcccceEEEecCCCCCchHHHH
Q 003559 291 EIYPLGGSADRLGL---VDHETGECLPAAMLPYCGRTLLEGLIRDLQAREFLYFKLYGKQCITPVAIMTSSAKNNHERIT 367 (811)
Q Consensus 291 vVlLAGGlGTRLG~---~~pKgg~~lpV~l~p~sgkTlLql~~e~I~~lq~La~~~~g~~~~IPl~IMTS~~~~Th~~T~ 367 (811)
+|+||||.||||+- ..||. ++|+ .|+++++..++.+.+. | .--++|.++. ..+...
T Consensus 2 avilaaG~gtRl~~~t~~~pK~--llpv-----~g~pii~~~l~~l~~~--------g---i~~i~iv~~~---~~~~i~ 60 (254)
T TIGR02623 2 AVILAGGLGTRISEETHLRPKP--MVEI-----GGKPILWHIMKIYSHH--------G---INDFIICCGY---KGYVIK 60 (254)
T ss_pred EEEEcCccccccCccccCCCcc--eeEE-----CCEEHHHHHHHHHHHC--------C---CCEEEEEcCC---CHHHHH
Confidence 47789999999964 48999 9988 5899998877766542 3 2245666665 678888
Q ss_pred HHHHHhCCCCCCCCceEEEecCCeeeEecCCCccc-ccCCCCccccCCCCcHHHHHHHhcCchHHHHHcCceEEEEEeCC
Q 003559 368 SLCERLRWFGRGQSSFQLFEQPLVPAVDAEDGQWL-VMRPFAPVCKPGGHGAIWKLAHDKGIFKWFHDNGRKGATVRQVS 446 (811)
Q Consensus 368 ~fle~n~yFGl~~~qV~~F~Q~~vP~l~~~dgki~-l~~~~~l~~~P~GhGdIy~aL~~sGlLd~l~~~Gikyi~v~~vD 446 (811)
++|.+...+|. .-++. ++++.+.... ...+.. .. ......|-|.|+-.....+ .+ +-+++.|.+.|
T Consensus 61 ~~~~~~~~~~~-~~~~~-~~~~~~~~~~-~~~~~~~~~--~~~~~~~~gt~~al~~~~~--~i------~~e~flv~~gD 127 (254)
T TIGR02623 61 EYFANYFLHMS-DVTFH-MADNTMEVHH-KRVEPWRVT--LVDTGESTQTGGRLKRVRE--YL------DDEAFCFTYGD 127 (254)
T ss_pred HHHHhhhhccc-CeeEE-eccccccccc-ccCCcccee--eeecCCcCCcHHHHHHHHH--hc------CCCeEEEEeCC
Confidence 88876443321 11222 2333222221 111000 00 0011246777764433322 11 13567788999
Q ss_pred CCcccccHhHHHHhhhhhhcCCceeEEEeeecCCCCcCceEEEEEecCCCccccceEEEEecccCcccCCCCCCCCCCcc
Q 003559 447 NVVAATDLTLLALAGIGLHHGKKLGFASCKRSSGATEGINVLIEKKNLDGKWAYGLSCIEYTEFDKFGITRGPFSSNGLQ 526 (811)
Q Consensus 447 N~La~vDP~~l~flG~~~~~~~~~~~~~vvRK~~~~e~vGvL~~~r~~dGk~~~~~~vVEYsEl~~~~~~~~~~~dg~l~ 526 (811)
++ ...|. -.++-++...+++..+.. +.. ...-|++.. .+|+ +.++.|=| .. ..
T Consensus 128 ~i-~~~dl--~~~~~~h~~~~~d~tl~~-~~~---~~~yG~v~~---d~~~------V~~~~Ekp-~~-------~~--- 180 (254)
T TIGR02623 128 GV-ADIDI--KALIAFHRKHGKKATVTA-VQP---PGRFGALDL---EGEQ------VTSFQEKP-LG-------DG--- 180 (254)
T ss_pred eE-ecCCH--HHHHHHHHHcCCCEEEEE-ecC---CCcccEEEE---CCCe------EEEEEeCC-CC-------CC---
Confidence 85 34443 234555555666665443 322 234577754 2343 33444322 11 11
Q ss_pred cccccceeeeeEeHHHHHhhh
Q 003559 527 ADFPANTNILYVDLASAELVG 547 (811)
Q Consensus 527 s~f~~Ninn~~fsL~~L~~vl 547 (811)
-..|+..++|+-+.+ +.+
T Consensus 181 --~~i~~Giyi~~~~il-~~l 198 (254)
T TIGR02623 181 --GWINGGFFVLNPSVL-DLI 198 (254)
T ss_pred --CeEEEEEEEEcHHHH-hhc
Confidence 125899999997766 444
No 52
>PRK13368 3-deoxy-manno-octulosonate cytidylyltransferase; Provisional
Probab=96.35 E-value=0.23 Score=51.53 Aligned_cols=103 Identities=15% Similarity=0.154 Sum_probs=65.6
Q ss_pred cEEEEEecCCccccCCCCCCCCCceeeccccCCCCCcchHHHHHHHHHHHHHhHhhcCCcccceEEEecCCCCCchHHHH
Q 003559 288 ELGEIYPLGGSADRLGLVDHETGECLPAAMLPYCGRTLLEGLIRDLQAREFLYFKLYGKQCITPVAIMTSSAKNNHERIT 367 (811)
Q Consensus 288 kvavVlLAGGlGTRLG~~~pKgg~~lpV~l~p~sgkTlLql~~e~I~~lq~La~~~~g~~~~IPl~IMTS~~~~Th~~T~ 367 (811)
+++.|+||||.++||+ .|- ++|+ .|++++++.++++.+.. + .-.++|-| . ++.+.
T Consensus 2 ~~~aiIlA~g~s~R~~---~K~--l~~i-----~GkPli~~~i~~l~~~~-------~---~~~ivv~t-~----~~~i~ 56 (238)
T PRK13368 2 KVVVVIPARYGSSRLP---GKP--LLDI-----LGKPMIQHVYERAAQAA-------G---VEEVYVAT-D----DQRIE 56 (238)
T ss_pred cEEEEEecCCCCCCCC---CCc--cCcc-----CCcCHHHHHHHHHHhcC-------C---CCeEEEEC-C----hHHHH
Confidence 4678999999999996 487 8776 69999999998876631 1 11234433 2 36788
Q ss_pred HHHHHhCCCCCCCCceEEEecCCeeeEecCCCcccccCCCCccccCCCCcHHHHHHHhcCchHHHHHcCceEEEEEeCCC
Q 003559 368 SLCERLRWFGRGQSSFQLFEQPLVPAVDAEDGQWLVMRPFAPVCKPGGHGAIWKLAHDKGIFKWFHDNGRKGATVRQVSN 447 (811)
Q Consensus 368 ~fle~n~yFGl~~~qV~~F~Q~~vP~l~~~dgki~l~~~~~l~~~P~GhGdIy~aL~~sGlLd~l~~~Gikyi~v~~vDN 447 (811)
+++++ +|. .+ +.+. ...+.|.+++..++.. .+.+++.+.+.|+
T Consensus 57 ~~~~~---~~~---~v--~~~~--------------------~~~~~g~~~~~~a~~~---------~~~d~~lv~~~D~ 99 (238)
T PRK13368 57 DAVEA---FGG---KV--VMTS--------------------DDHLSGTDRLAEVMLK---------IEADIYINVQGDE 99 (238)
T ss_pred HHHHH---cCC---eE--EecC--------------------ccCCCccHHHHHHHHh---------CCCCEEEEEcCCc
Confidence 88875 232 11 1110 0113455555544332 1567899999999
Q ss_pred Ccccc
Q 003559 448 VVAAT 452 (811)
Q Consensus 448 ~La~v 452 (811)
++...
T Consensus 100 P~i~~ 104 (238)
T PRK13368 100 PMIRP 104 (238)
T ss_pred CcCCH
Confidence 98764
No 53
>PRK09451 glmU bifunctional N-acetylglucosamine-1-phosphate uridyltransferase/glucosamine-1-phosphate acetyltransferase; Provisional
Probab=96.28 E-value=0.084 Score=60.47 Aligned_cols=179 Identities=14% Similarity=0.147 Sum_probs=99.3
Q ss_pred cEEEEEecCCccccCCCCCCCCCceeeccccCCCCCcchHHHHHHHHHHHHHhHhhcCCcccceEEEecCCCCCchHHHH
Q 003559 288 ELGEIYPLGGSADRLGLVDHETGECLPAAMLPYCGRTLLEGLIRDLQAREFLYFKLYGKQCITPVAIMTSSAKNNHERIT 367 (811)
Q Consensus 288 kvavVlLAGGlGTRLG~~~pKgg~~lpV~l~p~sgkTlLql~~e~I~~lq~La~~~~g~~~~IPl~IMTS~~~~Th~~T~ 367 (811)
++..|+||||.||||+...||. ++|+ .|+++++..++++.+. | .-.+++.++. ..+...
T Consensus 5 ~~~aiIlAaG~gtRl~~~~pK~--l~~i-----~gkpli~~~i~~l~~~--------g---i~~i~vv~~~---~~~~i~ 63 (456)
T PRK09451 5 AMSVVILAAGKGTRMYSDLPKV--LHTL-----AGKPMVQHVIDAANEL--------G---AQHVHLVYGH---GGDLLK 63 (456)
T ss_pred CceEEEEcCCCCCcCCCCCChh--ccee-----CChhHHHHHHHHHHhc--------C---CCcEEEEECC---CHHHHH
Confidence 5778999999999999888998 8887 6899999988877442 3 2256677776 445555
Q ss_pred HHHHHhCCCCCCCCceEEEecCCeeeEecCCCcccccCCCCccccCCCCcH-HHHHHHhcCchHHHHHcCceEEEEEeCC
Q 003559 368 SLCERLRWFGRGQSSFQLFEQPLVPAVDAEDGQWLVMRPFAPVCKPGGHGA-IWKLAHDKGIFKWFHDNGRKGATVRQVS 446 (811)
Q Consensus 368 ~fle~n~yFGl~~~qV~~F~Q~~vP~l~~~dgki~l~~~~~l~~~P~GhGd-Iy~aL~~sGlLd~l~~~Gikyi~v~~vD 446 (811)
+++.. ..+.+..|+ .+.|-|+ ++.++. .+ . .-+++.|.+.|
T Consensus 64 ~~~~~--------~~~~~i~~~----------------------~~~Gt~~al~~a~~------~l-~-~~~~vlV~~gD 105 (456)
T PRK09451 64 QTLAD--------EPLNWVLQA----------------------EQLGTGHAMQQAAP------FF-A-DDEDILMLYGD 105 (456)
T ss_pred Hhhcc--------CCcEEEECC----------------------CCCCcHHHHHHHHH------hh-c-cCCcEEEEeCC
Confidence 55532 122221111 2445444 444332 12 1 23689999999
Q ss_pred CCcccccHhHHHHhhhhhhcCCceeEEEeeecCCCCcCceEEEEEecCCCccccceEEEEecccCcccCCCCCCCCCCcc
Q 003559 447 NVVAATDLTLLALAGIGLHHGKKLGFASCKRSSGATEGINVLIEKKNLDGKWAYGLSCIEYTEFDKFGITRGPFSSNGLQ 526 (811)
Q Consensus 447 N~La~vDP~~l~flG~~~~~~~~~~~~~vvRK~~~~e~vGvL~~~r~~dGk~~~~~~vVEYsEl~~~~~~~~~~~dg~l~ 526 (811)
.++...+ .+-.++-.. ......+.+ .+-..+ ..-|++.. .+|+ -..++|....++. ...
T Consensus 106 ~P~i~~~-~i~~l~~~~--~~~~~~i~~-~~~~~~-~~yG~v~~---~~g~---V~~~~EKp~~~~~----------~~~ 164 (456)
T PRK09451 106 VPLISVE-TLQRLRDAK--PQGGIGLLT-VKLDNP-TGYGRITR---ENGK---VVGIVEQKDATDE----------QRQ 164 (456)
T ss_pred cccCCHH-HHHHHHHHh--hcCCEEEEE-EEcCCC-CCceEEEe---cCCe---EEEEEECCCCChH----------Hhh
Confidence 9875532 121223222 222223332 322233 23566543 4555 1234443222111 000
Q ss_pred cccc-cceeeeeEeHHHHHhhhc
Q 003559 527 ADFP-ANTNILYVDLASAELVGS 548 (811)
Q Consensus 527 s~f~-~Ninn~~fsL~~L~~vl~ 548 (811)
.. .|+..++|+-+.|.+.++
T Consensus 165 --~~~~~~GiYi~~~~~l~~~l~ 185 (456)
T PRK09451 165 --IQEINTGILVANGADLKRWLA 185 (456)
T ss_pred --ccEEEEEEEEEEHHHHHHHHH
Confidence 12 489999999888877665
No 54
>COG2266 GTP:adenosylcobinamide-phosphate guanylyltransferase [Coenzyme metabolism]
Probab=96.27 E-value=0.007 Score=61.49 Aligned_cols=61 Identities=20% Similarity=0.401 Sum_probs=48.3
Q ss_pred EEEEecCCccccCCCCCCCCCceeeccccCCCCCcchHHHHHHHHHHHHHhHhhcCCcccceEEEecCCCCCchHHHHHH
Q 003559 290 GEIYPLGGSADRLGLVDHETGECLPAAMLPYCGRTLLEGLIRDLQAREFLYFKLYGKQCITPVAIMTSSAKNNHERITSL 369 (811)
Q Consensus 290 avVlLAGGlGTRLG~~~pKgg~~lpV~l~p~sgkTlLql~~e~I~~lq~La~~~~g~~~~IPl~IMTS~~~~Th~~T~~f 369 (811)
..|+||||.|||||. .-|- +++| +||.+++..++.+... .+ -+++-||. ++..|++|
T Consensus 2 ~~iiMAGGrGtRmg~-~EKP--lleV-----~GkpLI~~v~~al~~~-------~d-----~i~v~isp---~tp~t~~~ 58 (177)
T COG2266 2 MAIIMAGGRGTRMGR-PEKP--LLEV-----CGKPLIDRVLEALRKI-------VD-----EIIVAISP---HTPKTKEY 58 (177)
T ss_pred ceEEecCCcccccCC-CcCc--chhh-----CCccHHHHHHHHHHhh-------cC-----cEEEEeCC---CCHhHHHH
Confidence 468999999999996 4455 7766 8999999888777652 12 36888998 88999999
Q ss_pred HHHh
Q 003559 370 CERL 373 (811)
Q Consensus 370 le~n 373 (811)
+++-
T Consensus 59 ~~~~ 62 (177)
T COG2266 59 LESV 62 (177)
T ss_pred HHhc
Confidence 9973
No 55
>TIGR01479 GMP_PMI mannose-1-phosphate guanylyltransferase/mannose-6-phosphate isomerase. This enzyme is known to be bifunctional, as both mannose-6-phosphate isomerase (EC 5.3.1.8) (PMI) and mannose-1-phosphate guanylyltransferase (EC 2.7.7.22) in Pseudomonas aeruginosa, Xanthomonas campestris, and Gluconacetobacter xylinus. The literature on the enzyme from E. coli attributes mannose-6-phosphate isomerase activity to an adjacent gene, but the present sequence has not been shown to lack the activity. The PMI domain is C-terminal.
Probab=96.26 E-value=0.1 Score=60.72 Aligned_cols=195 Identities=13% Similarity=0.137 Sum_probs=101.2
Q ss_pred EEEecCCccccCC----CCCCCCCceeeccccCCCCCcchHHHHHHHHHHHHHhHhhcCCcccceEEEecCCCCCchHHH
Q 003559 291 EIYPLGGSADRLG----LVDHETGECLPAAMLPYCGRTLLEGLIRDLQAREFLYFKLYGKQCITPVAIMTSSAKNNHERI 366 (811)
Q Consensus 291 vVlLAGGlGTRLG----~~~pKgg~~lpV~l~p~sgkTlLql~~e~I~~lq~La~~~~g~~~~IPl~IMTS~~~~Th~~T 366 (811)
.|+||||.||||+ ...||- ++|+. .++|++|..++++..+ + +. ..+|.|+. .-....
T Consensus 3 ~vILAgG~GtRl~PlS~~~~PK~--~l~l~----g~~~ll~~tl~~l~~~--------~--~~-~iviv~~~--~~~~~~ 63 (468)
T TIGR01479 3 PVILAGGSGTRLWPLSRELYPKQ--FLALV----GDLTMLQQTLKRLAGL--------P--CS-SPLVICNE--EHRFIV 63 (468)
T ss_pred EEEecCcccccCCccccCCCCCc--eeEcC----CCCcHHHHHHHHHhcC--------C--Cc-CcEEecCH--HHHHHH
Confidence 5889999999998 347999 99985 5699999999887653 2 11 34477775 222344
Q ss_pred HHHHHHhCCCCCCCCceEEEecCCeeeEecCCCcccccCCCCccccCCCCcH--HHHHHHhcCchHHHHH--cCceEEEE
Q 003559 367 TSLCERLRWFGRGQSSFQLFEQPLVPAVDAEDGQWLVMRPFAPVCKPGGHGA--IWKLAHDKGIFKWFHD--NGRKGATV 442 (811)
Q Consensus 367 ~~fle~n~yFGl~~~qV~~F~Q~~vP~l~~~dgki~l~~~~~l~~~P~GhGd--Iy~aL~~sGlLd~l~~--~Gikyi~v 442 (811)
.+.+++ +|++..+ +..| |. |-|-|+ .+.++ .+.+ .+=.++.|
T Consensus 64 ~~~l~~---~~~~~~~--~i~E---p~-------------------~~gTa~ai~~aa~-------~~~~~~~~~~~vlV 109 (468)
T TIGR01479 64 AEQLRE---IGKLASN--IILE---PV-------------------GRNTAPAIALAAL-------LAARRNGEDPLLLV 109 (468)
T ss_pred HHHHHH---cCCCcce--EEec---cc-------------------ccCchHHHHHHHH-------HHHHHHCCCcEEEE
Confidence 555554 3332211 1222 11 112221 11111 1212 23457899
Q ss_pred EeCCCCcccccHhHHHHhhhh---hhcCCceeEEEeeecCCCCcCceEEEEEecCC--CccccceEEEEecccCcccCCC
Q 003559 443 RQVSNVVAATDLTLLALAGIG---LHHGKKLGFASCKRSSGATEGINVLIEKKNLD--GKWAYGLSCIEYTEFDKFGITR 517 (811)
Q Consensus 443 ~~vDN~La~vDP~~l~flG~~---~~~~~~~~~~~vvRK~~~~e~vGvL~~~r~~d--Gk~~~~~~vVEYsEl~~~~~~~ 517 (811)
.+.|+++... ..|-.++-.+ ...+.-+.+. .+...+..+-|.+......+ +. ..|...-|=|+...+.
T Consensus 110 l~~D~~i~~~-~~f~~~l~~~~~~a~~~~lvtlg--i~p~~p~t~YGyI~~~~~~~~~~~----~~V~~f~EKP~~~~a~ 182 (468)
T TIGR01479 110 LAADHVITDE-DAFQAAVKLAMPAAAEGKLVTFG--IVPTHPETGYGYIRRGEPLAGEDV----YQVQRFVEKPDLATAQ 182 (468)
T ss_pred ecCceeecCH-HHHHHHHHHHHHHHhcCCEEEEE--ecCCCCCCCceEEEeCCccCCCCc----eEEeEEEECCChHHHH
Confidence 9999887532 1232233322 1223222222 33344556788886410001 11 1233344433331111
Q ss_pred CCCCCCCcccccccceeeeeEeHHHHHhhhcc
Q 003559 518 GPFSSNGLQADFPANTNILYVDLASAELVGSS 549 (811)
Q Consensus 518 ~~~~dg~l~s~f~~Ninn~~fsL~~L~~vl~~ 549 (811)
.-..+| .|-.|...+.|+.+.+.+.+.+
T Consensus 183 ~~l~~g----~~~wNsGif~~~~~~ll~~l~~ 210 (468)
T TIGR01479 183 AYLESG----DYYWNSGMFLFRASRYLAELKK 210 (468)
T ss_pred HHHhcC----CeEEEeeEEEEEHHHHHHHHHH
Confidence 111122 1445999999999999998875
No 56
>PF01128 IspD: 2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase; InterPro: IPR001228 4-diphosphocytidyl-2C-methyl-D-erythritol synthase, a bacterial ispD protein, catalyzes the third step of the deoxyxylulose-5-phosphate pathway (DXP) of isoprenoid biosynthesis; the formation of 4-diphosphocytidyl-2C-methyl-D-erythritol from CTP and 2C-methyl-D-erythritol 4-phosphate []. The isoprenoid pathway is a well known target for anti-infective drug development [, ].; GO: 0003824 catalytic activity, 0008299 isoprenoid biosynthetic process; PDB: 1VGW_F 1VGZ_A 1W77_A 2YC3_A 2YCM_A 2YC5_A 1VGU_A 3N9W_B 1I52_A 1H3M_B ....
Probab=96.26 E-value=0.0048 Score=64.91 Aligned_cols=65 Identities=18% Similarity=0.284 Sum_probs=48.0
Q ss_pred EEEEEecCCccccCCCCCCCCCceeeccccCCCCCcchHHHHHHHHHHHHHhHhhcCCcccceEEEecCCCCCchHHHHH
Q 003559 289 LGEIYPLGGSADRLGLVDHETGECLPAAMLPYCGRTLLEGLIRDLQAREFLYFKLYGKQCITPVAIMTSSAKNNHERITS 368 (811)
Q Consensus 289 vavVlLAGGlGTRLG~~~pKgg~~lpV~l~p~sgkTlLql~~e~I~~lq~La~~~~g~~~~IPl~IMTS~~~~Th~~T~~ 368 (811)
+++|+||||.|+|||.+.||- .+++ .|++++++.++.+++.. ..=-++|..++ +..+.+++
T Consensus 1 V~aIilAaG~G~R~g~~~pKQ--f~~l-----~Gkpvl~~tl~~f~~~~----------~i~~Ivvv~~~--~~~~~~~~ 61 (221)
T PF01128_consen 1 VAAIILAAGSGSRMGSGIPKQ--FLEL-----GGKPVLEYTLEAFLASP----------EIDEIVVVVPP--EDIDYVEE 61 (221)
T ss_dssp EEEEEEESS-STCCTSSS-GG--GSEE-----TTEEHHHHHHHHHHTTT----------TESEEEEEESG--GGHHHHHH
T ss_pred CEEEEeCCccchhcCcCCCCe--eeEE-----CCeEeHHHHHHHHhcCC----------CCCeEEEEecc--hhHHHHHH
Confidence 578999999999999999998 8776 79999999888876532 12235566666 56677777
Q ss_pred HHHH
Q 003559 369 LCER 372 (811)
Q Consensus 369 fle~ 372 (811)
++.+
T Consensus 62 ~~~~ 65 (221)
T PF01128_consen 62 LLSK 65 (221)
T ss_dssp HHHH
T ss_pred hhcC
Confidence 7776
No 57
>PLN02728 2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase
Probab=96.24 E-value=0.0069 Score=64.80 Aligned_cols=42 Identities=19% Similarity=0.254 Sum_probs=37.1
Q ss_pred cEEEEEecCCccccCCCCCCCCCceeeccccCCCCCcchHHHHHHHHHH
Q 003559 288 ELGEIYPLGGSADRLGLVDHETGECLPAAMLPYCGRTLLEGLIRDLQAR 336 (811)
Q Consensus 288 kvavVlLAGGlGTRLG~~~pKgg~~lpV~l~p~sgkTlLql~~e~I~~l 336 (811)
+++.|+||||.|+|||...||- .+++ .|++++++.++.+...
T Consensus 24 ~i~aIILAAG~gsRmg~~~pKq--ll~l-----~Gkpll~~tl~~~~~~ 65 (252)
T PLN02728 24 SVSVILLAGGVGKRMGANMPKQ--YLPL-----LGQPIALYSLYTFARM 65 (252)
T ss_pred ceEEEEEcccccccCCCCCCcc--eeEE-----CCeEHHHHHHHHHHhC
Confidence 6889999999999999889999 8887 6999999988877654
No 58
>cd04198 eIF-2B_gamma_N The N-terminal domain of gamma subunit of the eIF-2B is a subfamily of glycosyltransferase 2. N-terminal domain of gamma subunit of the eukaryotic translation initiation factor 2B (eIF-2B): eIF-2B is a guanine nucleotide-exchange factor which mediates the exchange of GDP (bound to initiation factor eIF2) for GTP, generating active eIF2.GTP complex. EIF2B is a complex multimeric protein consisting of five subunits named alpha, beta, gamma, delta and epsilon. Subunit gamma shares sequence similarity with epsilon subunit, and with a family of bifunctional nucleotide-binding enzymes such as ADP-glucose pyrophosphorylase, suggesting that epsilon subunit may play roles in nucleotide binding activity. In yeast, eIF2B gamma enhances the activity of eIF2B-epsilon leading to the idea that these subunits form the catalytic subcomplex.
Probab=96.17 E-value=0.066 Score=55.18 Aligned_cols=130 Identities=15% Similarity=0.178 Sum_probs=76.2
Q ss_pred EEEecCCccccCC---CCCCCCCceeeccccCCCCCcchHHHHHHHHHHHHHhHhhcCCcccceEEEecCCCCCchHHHH
Q 003559 291 EIYPLGGSADRLG---LVDHETGECLPAAMLPYCGRTLLEGLIRDLQAREFLYFKLYGKQCITPVAIMTSSAKNNHERIT 367 (811)
Q Consensus 291 vVlLAGGlGTRLG---~~~pKgg~~lpV~l~p~sgkTlLql~~e~I~~lq~La~~~~g~~~~IPl~IMTS~~~~Th~~T~ 367 (811)
.|+||||.|+||+ ...||. ++|+ .|++++++.++.+.+. | .-.++|.+.. .-.+.+.
T Consensus 3 aVILAgG~g~R~~plt~~~pK~--Llpv-----~g~pli~~~l~~l~~~--------g---~~~iivv~~~--~~~~~i~ 62 (214)
T cd04198 3 AVILAGGGGSRLYPLTDNIPKA--LLPV-----ANKPMIWYPLDWLEKA--------G---FEDVIVVVPE--EEQAEIS 62 (214)
T ss_pred EEEEeCCCCCcCCccccCCCcc--cCEE-----CCeeHHHHHHHHHHHC--------C---CCeEEEEECH--HHHHHHH
Confidence 4669999999998 578999 9987 5789999988887652 3 2245677775 2345678
Q ss_pred HHHHHhCCCCCCCCceEEEecCCeeeEecCCCcccccCCCCccccCCCCcHHHHHHHhcCchHHHHHcCceEEEEEeCCC
Q 003559 368 SLCERLRWFGRGQSSFQLFEQPLVPAVDAEDGQWLVMRPFAPVCKPGGHGAIWKLAHDKGIFKWFHDNGRKGATVRQVSN 447 (811)
Q Consensus 368 ~fle~n~yFGl~~~qV~~F~Q~~vP~l~~~dgki~l~~~~~l~~~P~GhGdIy~aL~~sGlLd~l~~~Gikyi~v~~vDN 447 (811)
+++++..+ ......... .+ ....+-|-|+..+...+. + .+.+.|.+.|.
T Consensus 63 ~~l~~~~~-~~~~~~~~~-------~~--------------~~~~~~gt~~al~~~~~~-i--------~~d~lv~~~D~ 111 (214)
T cd04198 63 TYLRSFPL-NLKQKLDEV-------TI--------------VLDEDMGTADSLRHIRKK-I--------KKDFLVLSCDL 111 (214)
T ss_pred HHHHhccc-ccCcceeEE-------Ee--------------cCCCCcChHHHHHHHHhh-c--------CCCEEEEeCcc
Confidence 88876421 000000000 00 112467888877776653 1 24567777774
Q ss_pred CcccccHhHHHHhhhhhhcCCceeEEE
Q 003559 448 VVAATDLTLLALAGIGLHHGKKLGFAS 474 (811)
Q Consensus 448 ~La~vDP~~l~flG~~~~~~~~~~~~~ 474 (811)
+ ...| +..++-.+...++.+.+..
T Consensus 112 i-~~~~--l~~~l~~h~~~~~~~t~~~ 135 (214)
T cd04198 112 I-TDLP--LIELVDLHRSHDASLTVLL 135 (214)
T ss_pred c-cccC--HHHHHHHHhccCCcEEEEE
Confidence 3 2233 2233545555555555543
No 59
>COG0746 MobA Molybdopterin-guanine dinucleotide biosynthesis protein A [Coenzyme metabolism]
Probab=96.11 E-value=0.012 Score=60.61 Aligned_cols=100 Identities=26% Similarity=0.397 Sum_probs=66.9
Q ss_pred cEEEEEecCCccccCCCCCCCCCceeeccccCCCCCcchHHHHHHHHHHHHHhHhhcCCcccceEEEecCCCCCchHHHH
Q 003559 288 ELGEIYPLGGSADRLGLVDHETGECLPAAMLPYCGRTLLEGLIRDLQAREFLYFKLYGKQCITPVAIMTSSAKNNHERIT 367 (811)
Q Consensus 288 kvavVlLAGGlGTRLG~~~pKgg~~lpV~l~p~sgkTlLql~~e~I~~lq~La~~~~g~~~~IPl~IMTS~~~~Th~~T~ 367 (811)
....|+||||+|.|| .+|. ++++ .|++++|+.++++... +. .++|.... +.+.
T Consensus 4 ~~~~vILAGG~srRm---~dK~--l~~~-----~g~~lie~v~~~L~~~-----------~~-~vvi~~~~---~~~~-- 56 (192)
T COG0746 4 PMTGVILAGGKSRRM---RDKA--LLPL-----NGRPLIEHVIDRLRPQ-----------VD-VVVISANR---NQGR-- 56 (192)
T ss_pred CceEEEecCCccccc---cccc--ccee-----CCeEHHHHHHHHhccc-----------CC-EEEEeCCC---chhh--
Confidence 567899999999999 8898 8877 7899999999888653 34 56666554 3221
Q ss_pred HHHHHhCCCCCCCCceEEEecCCeeeEecCCCcccccCCCCccccCCCCcHHHHHHHhcCchHHHHHcCceEEEEEeCCC
Q 003559 368 SLCERLRWFGRGQSSFQLFEQPLVPAVDAEDGQWLVMRPFAPVCKPGGHGAIWKLAHDKGIFKWFHDNGRKGATVRQVSN 447 (811)
Q Consensus 368 ~fle~n~yFGl~~~qV~~F~Q~~vP~l~~~dgki~l~~~~~l~~~P~GhGdIy~aL~~sGlLd~l~~~Gikyi~v~~vDN 447 (811)
+..|| +|.+.|.. +|.|-+ .|++.-|...+-+|++|..+|.
T Consensus 57 -----~~~~g-------------~~vv~D~~---------------~~~GPL------~Gi~~al~~~~~~~~~v~~~D~ 97 (192)
T COG0746 57 -----YAEFG-------------LPVVPDEL---------------PGFGPL------AGILAALRHFGTEWVLVLPCDM 97 (192)
T ss_pred -----hhccC-------------CceeecCC---------------CCCCCH------HHHHHHHHhCCCCeEEEEecCC
Confidence 12222 45554221 121211 2444445556689999999999
Q ss_pred Cccccc
Q 003559 448 VVAATD 453 (811)
Q Consensus 448 ~La~vD 453 (811)
+....|
T Consensus 98 P~i~~~ 103 (192)
T COG0746 98 PFIPPE 103 (192)
T ss_pred CCCCHH
Confidence 999873
No 60
>cd04182 GT_2_like_f GT_2_like_f is a subfamily of the glycosyltransferase family 2 (GT-2) with unknown function. GT-2 includes diverse families of glycosyltransferases with a common GT-A type structural fold, which has two tightly associated beta/alpha/beta domains that tend to form a continuous central sheet of at least eight beta-strands. These are enzymes that catalyze the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. Glycosyltransferases have been classified into more than 90 distinct sequence based families.
Probab=96.09 E-value=0.0078 Score=59.10 Aligned_cols=38 Identities=26% Similarity=0.397 Sum_probs=32.8
Q ss_pred EEEEEecCCccccCCCCCCCCCceeeccccCCCCCcchHHHHHHHHH
Q 003559 289 LGEIYPLGGSADRLGLVDHETGECLPAAMLPYCGRTLLEGLIRDLQA 335 (811)
Q Consensus 289 vavVlLAGGlGTRLG~~~pKgg~~lpV~l~p~sgkTlLql~~e~I~~ 335 (811)
++.|+||||.|+|||- +|. ++++ .|+++++..++++..
T Consensus 1 ~~~vIlAgG~s~R~g~--~K~--l~~~-----~g~~li~~~i~~l~~ 38 (186)
T cd04182 1 IAAIILAAGRSSRMGG--NKL--LLPL-----DGKPLLRHALDAALA 38 (186)
T ss_pred CeEEEECCCCCCCCCC--Cce--eCee-----CCeeHHHHHHHHHHh
Confidence 3678999999999985 898 8876 699999999998765
No 61
>PRK00560 molybdopterin-guanine dinucleotide biosynthesis protein A; Provisional
Probab=96.00 E-value=0.0073 Score=61.74 Aligned_cols=39 Identities=26% Similarity=0.403 Sum_probs=33.9
Q ss_pred cEEEEEecCCccccCCCCCCCCCceeeccccCCCC-CcchHHHHHHHHH
Q 003559 288 ELGEIYPLGGSADRLGLVDHETGECLPAAMLPYCG-RTLLEGLIRDLQA 335 (811)
Q Consensus 288 kvavVlLAGGlGTRLG~~~pKgg~~lpV~l~p~sg-kTlLql~~e~I~~ 335 (811)
+++.|+||||+|+||| .+|. ++++ .| +|+++..++++..
T Consensus 8 ~i~~vILAgG~s~RmG--~~K~--ll~~-----~g~~~ll~~~i~~l~~ 47 (196)
T PRK00560 8 NIPCVILAGGKSSRMG--ENKA--LLPF-----GSYSSLLEYQYTRLLK 47 (196)
T ss_pred CceEEEECCcccccCC--CCce--EEEe-----CCCCcHHHHHHHHHHH
Confidence 7889999999999998 5788 8887 46 9999999998854
No 62
>PRK14354 glmU bifunctional N-acetylglucosamine-1-phosphate uridyltransferase/glucosamine-1-phosphate acetyltransferase; Provisional
Probab=95.99 E-value=0.23 Score=56.63 Aligned_cols=182 Identities=13% Similarity=0.142 Sum_probs=98.0
Q ss_pred EEEEEecCCccccCCCCCCCCCceeeccccCCCCCcchHHHHHHHHHHHHHhHhhcCCcccceEEEecCCCCCchHHHHH
Q 003559 289 LGEIYPLGGSADRLGLVDHETGECLPAAMLPYCGRTLLEGLIRDLQAREFLYFKLYGKQCITPVAIMTSSAKNNHERITS 368 (811)
Q Consensus 289 vavVlLAGGlGTRLG~~~pKgg~~lpV~l~p~sgkTlLql~~e~I~~lq~La~~~~g~~~~IPl~IMTS~~~~Th~~T~~ 368 (811)
...|+||||.||||+...||. ++|+ .|++++++.++++... | .-.++|.++. ..+...+
T Consensus 3 ~~avIlAaG~g~Rl~~~~pK~--ll~i-----~Gkpli~~~l~~l~~~--------g---i~~iivvv~~---~~~~i~~ 61 (458)
T PRK14354 3 RYAIILAAGKGTRMKSKLPKV--LHKV-----CGKPMVEHVVDSVKKA--------G---IDKIVTVVGH---GAEEVKE 61 (458)
T ss_pred ceEEEEeCCCCcccCCCCChh--hCEe-----CCccHHHHHHHHHHhC--------C---CCeEEEEeCC---CHHHHHH
Confidence 457889999999999888999 9887 5899999999887542 3 1245666665 4555555
Q ss_pred HHHHhCCCCCCCCceEEEecCCeeeEecCCCcccccCCCCccccCCCCcH-HHHHHHhcCchHHHHHcCceEEEEEeCCC
Q 003559 369 LCERLRWFGRGQSSFQLFEQPLVPAVDAEDGQWLVMRPFAPVCKPGGHGA-IWKLAHDKGIFKWFHDNGRKGATVRQVSN 447 (811)
Q Consensus 369 fle~n~yFGl~~~qV~~F~Q~~vP~l~~~dgki~l~~~~~l~~~P~GhGd-Iy~aL~~sGlLd~l~~~Gikyi~v~~vDN 447 (811)
++.+ .+.+. .+. .+.|.++ ++.++. .+. ..-+++++.+.|+
T Consensus 62 ~~~~---------~~~~~----------------~~~------~~~g~~~al~~a~~------~l~-~~~d~vlv~~~D~ 103 (458)
T PRK14354 62 VLGD---------RSEFA----------------LQE------EQLGTGHAVMQAEE------FLA-DKEGTTLVICGDT 103 (458)
T ss_pred HhcC---------CcEEE----------------EcC------CCCCHHHHHHHHHH------Hhc-ccCCeEEEEECCc
Confidence 5432 11111 110 1334433 444332 221 1126899999999
Q ss_pred CcccccHhHHHHhhhhhhcCCceeEEEeeecCCCCcCceEEEEEecCCCccccceEEEEecccCcccCCCCCCCCCCccc
Q 003559 448 VVAATDLTLLALAGIGLHHGKKLGFASCKRSSGATEGINVLIEKKNLDGKWAYGLSCIEYTEFDKFGITRGPFSSNGLQA 527 (811)
Q Consensus 448 ~La~vDP~~l~flG~~~~~~~~~~~~~vvRK~~~~e~vGvL~~~r~~dGk~~~~~~vVEYsEl~~~~~~~~~~~dg~l~s 527 (811)
++...+ .+-.++-.....+.+..+.+ .+...+ ...|++.. ..+|+ ++++-|-++.. . .+ ..
T Consensus 104 p~i~~~-~l~~li~~~~~~~~~~t~~~-~~~~~~-~~~g~v~~--d~~~~------V~~~~ek~~~~-~----~~-~~-- 164 (458)
T PRK14354 104 PLITAE-TLKNLIDFHEEHKAAATILT-AIAENP-TGYGRIIR--NENGE------VEKIVEQKDAT-E----EE-KQ-- 164 (458)
T ss_pred cccCHH-HHHHHHHHHHhcCCceEEEE-EEcCCC-CCceEEEE--cCCCC------EEEEEECCCCC-h----HH-hc--
Confidence 876542 11122333323344443332 222222 23555532 13444 33333322211 0 00 00
Q ss_pred ccccceeeeeEeHHHHHhhhc
Q 003559 528 DFPANTNILYVDLASAELVGS 548 (811)
Q Consensus 528 ~f~~Ninn~~fsL~~L~~vl~ 548 (811)
.+..|+...+|+-+.|.+.++
T Consensus 165 ~~~~~~Giy~f~~~~l~~~l~ 185 (458)
T PRK14354 165 IKEINTGTYCFDNKALFEALK 185 (458)
T ss_pred CcEEEEEEEEEEHHHHHHHHH
Confidence 133599999999887777664
No 63
>TIGR01105 galF UTP-glucose-1-phosphate uridylyltransferase, non-catalytic GalF subunit. GalF is a non-catalytic subunit of the UTP-glucose pyrophosphorylase modulating the enzyme activity to increase the formation of UDP-glucose
Probab=95.93 E-value=0.018 Score=63.08 Aligned_cols=64 Identities=14% Similarity=0.343 Sum_probs=51.5
Q ss_pred cEEEEEecCCccccCC---CCCCCCCceeeccccCCCCCcchHHHHHHHHHHHHHhHhhcCCcccceEEEecCCCCCchH
Q 003559 288 ELGEIYPLGGSADRLG---LVDHETGECLPAAMLPYCGRTLLEGLIRDLQAREFLYFKLYGKQCITPVAIMTSSAKNNHE 364 (811)
Q Consensus 288 kvavVlLAGGlGTRLG---~~~pKgg~~lpV~l~p~sgkTlLql~~e~I~~lq~La~~~~g~~~~IPl~IMTS~~~~Th~ 364 (811)
.+-+|+||||.||||. ..-||- |+|| .||+++++.++.+... | .--++|.|+. ..+
T Consensus 3 ~mkavILAaG~GTRL~PlT~~~PKp--LvpV-----~gkPiI~~vl~~l~~~--------G---i~~ivivv~~---~~~ 61 (297)
T TIGR01105 3 NLKAVIPVAGLGMHMLPATKAIPKE--MLPI-----VDKPMIQYIVDEIVAA--------G---IKEIVLVTHA---SKN 61 (297)
T ss_pred ceEEEEECCCCCcccCcccCCCCce--eeEE-----CCEEHHHHHHHHHHHC--------C---CCEEEEEecC---ChH
Confidence 4567899999999998 477999 9998 5899999998888653 4 2357888887 777
Q ss_pred HHHHHHHH
Q 003559 365 RITSLCER 372 (811)
Q Consensus 365 ~T~~fle~ 372 (811)
...++|..
T Consensus 62 ~i~~~~~~ 69 (297)
T TIGR01105 62 AVENHFDT 69 (297)
T ss_pred HHHHHHhc
Confidence 88999864
No 64
>cd02523 PC_cytidylyltransferase Phosphocholine cytidylyltransferases catalyze the synthesis of CDP-choline. This family contains proteins similar to prokaryotic phosphocholine (P-cho) cytidylyltransferases. Phosphocholine (PC) cytidylyltransferases catalyze the transfer of a cytidine monophosphate from CTP to phosphocholine to form CDP-choline. PC is the most abundant phospholipid in eukaryotic membranes and it is also important in prokaryotic membranes. For pathogenic prokaryotes, the cell surface PC facilitates the interaction with host surface and induces attachment and invasion. In addition cell wall PC serves as scaffold for a group of choline-binding proteins that are secreted from the cells. Phosphocholine (PC) cytidylyltransferase is a key enzyme in the prokaryotic choline metabolism pathway. It has been hypothesized to consist of a choline transport system, a choline kinase, CTP:phosphocholine cytidylyltransferase, and a choline phosphotransferase that transfers P-Cho from CDP
Probab=95.90 E-value=0.15 Score=52.45 Aligned_cols=60 Identities=30% Similarity=0.408 Sum_probs=45.1
Q ss_pred EEecCCccccCCC---CCCCCCceeeccccCCCCCcchHHHHHHHHHHHHHhHhhcCCcccceEEEecCCCCCchHHHHH
Q 003559 292 IYPLGGSADRLGL---VDHETGECLPAAMLPYCGRTLLEGLIRDLQAREFLYFKLYGKQCITPVAIMTSSAKNNHERITS 368 (811)
Q Consensus 292 VlLAGGlGTRLG~---~~pKgg~~lpV~l~p~sgkTlLql~~e~I~~lq~La~~~~g~~~~IPl~IMTS~~~~Th~~T~~ 368 (811)
|+||||.||||+- ..||. ++|+ .|+++++..++.+... | .-.++|.|.. ..+...+
T Consensus 2 iIlAaG~g~Rl~~lt~~~pK~--l~~~-----~g~~li~~~l~~l~~~--------g---i~~i~vv~~~---~~~~~~~ 60 (229)
T cd02523 2 IILAAGRGSRLRPLTEDRPKC--LLEI-----NGKPLLERQIETLKEA--------G---IDDIVIVTGY---KKEQIEE 60 (229)
T ss_pred EEEeccCccccchhhCCCCce--eeeE-----CCEEHHHHHHHHHHHC--------C---CceEEEEecc---CHHHHHH
Confidence 7899999999975 46998 9887 5789999988877552 3 2246777776 5666777
Q ss_pred HHHH
Q 003559 369 LCER 372 (811)
Q Consensus 369 fle~ 372 (811)
++.+
T Consensus 61 ~~~~ 64 (229)
T cd02523 61 LLKK 64 (229)
T ss_pred HHhc
Confidence 7764
No 65
>COG1213 Predicted sugar nucleotidyltransferases [Cell envelope biogenesis, outer membrane]
Probab=95.79 E-value=0.016 Score=61.43 Aligned_cols=66 Identities=18% Similarity=0.302 Sum_probs=54.5
Q ss_pred EEEEecCCccccCCCCCCCCCceeeccccCCCCCcchHHHHHHHHHHHHHhHhhcCCcccceEEEecCCCCCchHHHHHH
Q 003559 290 GEIYPLGGSADRLGLVDHETGECLPAAMLPYCGRTLLEGLIRDLQAREFLYFKLYGKQCITPVAIMTSSAKNNHERITSL 369 (811)
Q Consensus 290 avVlLAGGlGTRLG~~~pKgg~~lpV~l~p~sgkTlLql~~e~I~~lq~La~~~~g~~~~IPl~IMTS~~~~Th~~T~~f 369 (811)
..|+||.|.|+|||-+.||. ++.+ .|++++..+++++... | .--++|.|+. ...+-..+|
T Consensus 5 kavILAAG~GsRlg~~~PK~--Lvev-----~gr~ii~~~i~~L~~~--------g---i~e~vvV~~g--~~~~lve~~ 64 (239)
T COG1213 5 KAVILAAGFGSRLGPDIPKA--LVEV-----GGREIIYRTIENLAKA--------G---ITEFVVVTNG--YRADLVEEF 64 (239)
T ss_pred eEEEEecccccccCCCCCch--hhhc-----CCeEeHHHHHHHHHHc--------C---CceEEEEecc--chHHHHHHH
Confidence 46889999999999999999 8877 5999999888877653 2 4567999977 488888899
Q ss_pred HHHhCC
Q 003559 370 CERLRW 375 (811)
Q Consensus 370 le~n~y 375 (811)
+.++++
T Consensus 65 l~~~~~ 70 (239)
T COG1213 65 LKKYPF 70 (239)
T ss_pred HhcCCc
Confidence 988774
No 66
>cd02513 CMP-NeuAc_Synthase CMP-NeuAc_Synthase activates N-acetylneuraminic acid by adding CMP moiety. CMP-N-acetylneuraminic acid synthetase (CMP-NeuAc synthetase) or acylneuraminate cytidylyltransferase catalyzes the transfer the CMP moiety of CTP to the anomeric hydroxyl group of NeuAc in the presence of Mg++. It is the second to last step in the sialylation of the oligosaccharide component of glycoconjugates by providing the activated sugar-nucleotide cytidine 5'-monophosphate N-acetylneuraminic acid (CMP-Neu5Ac), the substrate for sialyltransferases. Eukaryotic CMP-NeuAc synthetases are predominantly located in the nucleus. The activated CMP-Neu5Ac diffuses from the nucleus into the cytoplasm.
Probab=95.76 E-value=0.2 Score=51.08 Aligned_cols=39 Identities=18% Similarity=0.262 Sum_probs=32.8
Q ss_pred cEEEEEecCCccccCCCCCCCCCceeeccccCCCCCcchHHHHHHHHHH
Q 003559 288 ELGEIYPLGGSADRLGLVDHETGECLPAAMLPYCGRTLLEGLIRDLQAR 336 (811)
Q Consensus 288 kvavVlLAGGlGTRLG~~~pKgg~~lpV~l~p~sgkTlLql~~e~I~~l 336 (811)
+++.|+||||.|+||+ .|- ++++ .|++++++.++.+++.
T Consensus 1 ~~~~iIlA~G~s~R~~---~K~--l~~l-----~Gkpll~~~l~~l~~~ 39 (223)
T cd02513 1 KILAIIPARGGSKGIP---GKN--IRPL-----GGKPLIAWTIEAALES 39 (223)
T ss_pred CeEEEEecCCCCCCCC---Ccc--cchh-----CCccHHHHHHHHHHhC
Confidence 4688999999999996 477 7665 7999999999998764
No 67
>TIGR03310 matur_ygfJ molybdenum hydroxylase accessory protein, YgfJ family. Members of this protein family are probable accessory proteins for the biosynthesis of enzymes related to xanthine dehydrogenase. Comparative genomics suggests a role in the maturation of selenium-dependent molybdenum hydroxylases, although a tenuous alternative hypothesis is a role for this protein (with a requirement for SelD, the selenium donor protein in the selenocysteine and selenouridine biosynthesis pathways) metabolizing a selenium-containing substrate such as selenate.
Probab=95.63 E-value=0.013 Score=58.20 Aligned_cols=48 Identities=23% Similarity=0.354 Sum_probs=38.0
Q ss_pred EEEecCCccccCCCCCCCCCceeeccccCCCCCcchHHHHHHHHHHHHHhHhhcCCcccceEEEecCC
Q 003559 291 EIYPLGGSADRLGLVDHETGECLPAAMLPYCGRTLLEGLIRDLQAREFLYFKLYGKQCITPVAIMTSS 358 (811)
Q Consensus 291 vVlLAGGlGTRLG~~~pKgg~~lpV~l~p~sgkTlLql~~e~I~~lq~La~~~~g~~~~IPl~IMTS~ 358 (811)
+|+||||.|+||| .||. ++++ .|+++++..++++++. + .-+++|.|+.
T Consensus 2 ~iIla~G~s~R~g--~~K~--ll~~-----~g~pll~~~i~~l~~~--------~---~~~iivv~~~ 49 (188)
T TIGR03310 2 AIILAAGLSSRMG--QNKL--LLPY-----KGKTILEHVVDNALRL--------F---FDEVILVLGH 49 (188)
T ss_pred eEEECCCCcccCC--CCce--eccc-----CCeeHHHHHHHHHHHc--------C---CCcEEEEeCC
Confidence 5899999999998 5898 8876 6899999999888653 2 2356777776
No 68
>PRK10122 GalU regulator GalF; Provisional
Probab=95.63 E-value=0.034 Score=60.78 Aligned_cols=63 Identities=14% Similarity=0.349 Sum_probs=51.4
Q ss_pred cEEEEEecCCccccCC---CCCCCCCceeeccccCCCCCcchHHHHHHHHHHHHHhHhhcCCcccceEEEecCCCCCchH
Q 003559 288 ELGEIYPLGGSADRLG---LVDHETGECLPAAMLPYCGRTLLEGLIRDLQAREFLYFKLYGKQCITPVAIMTSSAKNNHE 364 (811)
Q Consensus 288 kvavVlLAGGlGTRLG---~~~pKgg~~lpV~l~p~sgkTlLql~~e~I~~lq~La~~~~g~~~~IPl~IMTS~~~~Th~ 364 (811)
++.+|++|||.||||. ...||- ++|| .||+++++.++.+... | .--++|+|.. ..+
T Consensus 3 ~mkavIlAaG~GtRl~PlT~~~PK~--llpi-----~gkpiI~~~l~~l~~~--------G---i~~i~iv~~~---~~~ 61 (297)
T PRK10122 3 NLKAVIPVAGLGMHMLPATKAIPKE--MLPI-----VDKPMIQYIVDEIVAA--------G---IKEIVLVTHA---SKN 61 (297)
T ss_pred ceEEEEECCcCCcccCcccCCCCce--eeEE-----CCEEHHHHHHHHHHHC--------C---CCEEEEEcCC---ChH
Confidence 5778999999999998 578999 9998 5789999999888663 4 2356788876 788
Q ss_pred HHHHHHH
Q 003559 365 RITSLCE 371 (811)
Q Consensus 365 ~T~~fle 371 (811)
...++|.
T Consensus 62 ~i~~~~~ 68 (297)
T PRK10122 62 AVENHFD 68 (297)
T ss_pred HHHHHHh
Confidence 8888886
No 69
>TIGR02665 molyb_mobA molybdopterin-guanine dinucleotide biosynthesis protein A, proteobacterial. In many molybdopterin-containing enzymes, including nitrate reductase and dimethylsulfoxide reductase, the cofactor is molybdopterin-guanine dinucleotide. The family described here contains MobA, molybdopterin-guanine dinucleotide biosynthesis protein A, from the Proteobacteria only. MobA can reconstitute molybdopterin-guanine dinucleotide biosynthesis without the product of the neighboring gene MobB. The probable MobA proteins of other lineages differ sufficiently that they are not included in scope of this family.
Probab=95.44 E-value=0.013 Score=58.25 Aligned_cols=38 Identities=24% Similarity=0.444 Sum_probs=32.3
Q ss_pred EEEEEecCCccccCCCCCCCCCceeeccccCCCCCcchHHHHHHHH
Q 003559 289 LGEIYPLGGSADRLGLVDHETGECLPAAMLPYCGRTLLEGLIRDLQ 334 (811)
Q Consensus 289 vavVlLAGGlGTRLG~~~pKgg~~lpV~l~p~sgkTlLql~~e~I~ 334 (811)
++.|+||||.|||||- .||. ++++ .|+++++..++.+.
T Consensus 1 ~~~iILAgG~s~Rmg~-~~K~--l~~i-----~g~pll~~~l~~l~ 38 (186)
T TIGR02665 1 ISGVILAGGRARRMGG-RDKG--LVEL-----GGKPLIEHVLARLR 38 (186)
T ss_pred CeEEEEcCCccccCCC-CCCc--eeEE-----CCEEHHHHHHHHHH
Confidence 3678999999999983 3898 8887 68999999998874
No 70
>PF12804 NTP_transf_3: MobA-like NTP transferase domain; PDB: 3FWW_A 2XME_D 2XMH_C 2DPW_A 2WAW_A 2OI5_B 1HV9_B 1FWY_A 2OI6_A 2OI7_B ....
Probab=95.44 E-value=0.0098 Score=57.63 Aligned_cols=48 Identities=21% Similarity=0.462 Sum_probs=38.8
Q ss_pred EEEecCCccccCCCCCCCCCceeeccccCCCCCcchHHHHHHHHHHHHHhHhhcCCcccceEEEecCC
Q 003559 291 EIYPLGGSADRLGLVDHETGECLPAAMLPYCGRTLLEGLIRDLQAREFLYFKLYGKQCITPVAIMTSS 358 (811)
Q Consensus 291 vVlLAGGlGTRLG~~~pKgg~~lpV~l~p~sgkTlLql~~e~I~~lq~La~~~~g~~~~IPl~IMTS~ 358 (811)
+|+||||.|+|||- ||. ++++ .|+++++..++.+.... .=+++|.+..
T Consensus 1 ~vILa~G~s~Rmg~--~K~--l~~i-----~g~~li~~~l~~l~~~~-----------~~~Ivvv~~~ 48 (160)
T PF12804_consen 1 AVILAAGKSSRMGG--PKA--LLPI-----GGKPLIERVLEALREAG-----------VDDIVVVTGE 48 (160)
T ss_dssp EEEEESSSCGGGTS--CGG--GSEE-----TTEEHHHHHHHHHHHHT-----------ESEEEEEEST
T ss_pred CEEECCcCcccCCC--Ccc--ceeE-----CCccHHHHHHHHhhccC-----------CceEEEecCh
Confidence 57899999999994 998 8877 79999999999987752 2366777765
No 71
>PLN02917 CMP-KDO synthetase
Probab=95.43 E-value=0.48 Score=51.91 Aligned_cols=187 Identities=10% Similarity=0.087 Sum_probs=102.0
Q ss_pred cEEEEEecCCccccCCCCCCCCCceeeccccCCCCCcchHHHHHHHHHHHHHhHhhcCCcccceEEEecCCCCCchHHHH
Q 003559 288 ELGEIYPLGGSADRLGLVDHETGECLPAAMLPYCGRTLLEGLIRDLQAREFLYFKLYGKQCITPVAIMTSSAKNNHERIT 367 (811)
Q Consensus 288 kvavVlLAGGlGTRLG~~~pKgg~~lpV~l~p~sgkTlLql~~e~I~~lq~La~~~~g~~~~IPl~IMTS~~~~Th~~T~ 367 (811)
+++.|++|+|.++||| +|- ++++ .|++++++.++++.... .+..++... ..+++.
T Consensus 47 ~i~aIIpA~G~SsR~~---~K~--L~~i-----~GkPLL~~vi~~a~~~~-----------~~~~VVV~~----~~e~I~ 101 (293)
T PLN02917 47 RVVGIIPARFASSRFE---GKP--LVHI-----LGKPMIQRTWERAKLAT-----------TLDHIVVAT----DDERIA 101 (293)
T ss_pred cEEEEEecCCCCCCCC---CCC--eeeE-----CCEEHHHHHHHHHHcCC-----------CCCEEEEEC----ChHHHH
Confidence 7889999999999997 587 8877 69999999999886532 122333332 346677
Q ss_pred HHHHHhCCCCCCCCceEEEecCCeeeEecCCCcccccCCCCccccCCCCcHHHHHHHhcCchHHHHHcCceEEEEEeCCC
Q 003559 368 SLCERLRWFGRGQSSFQLFEQPLVPAVDAEDGQWLVMRPFAPVCKPGGHGAIWKLAHDKGIFKWFHDNGRKGATVRQVSN 447 (811)
Q Consensus 368 ~fle~n~yFGl~~~qV~~F~Q~~vP~l~~~dgki~l~~~~~l~~~P~GhGdIy~aL~~sGlLd~l~~~Gikyi~v~~vDN 447 (811)
+++.++ |. .+..|. ...+.|-|.+..++. .+ ....+++.+.+.|.
T Consensus 102 ~~~~~~---~v-----~vi~~~--------------------~~~~~GT~~~~~a~~------~l-~~~~d~Vlil~gD~ 146 (293)
T PLN02917 102 ECCRGF---GA-----DVIMTS--------------------ESCRNGTERCNEALK------KL-EKKYDIVVNIQGDE 146 (293)
T ss_pred HHHHHc---CC-----EEEeCC--------------------cccCCchHHHHHHHH------hc-cCCCCEEEEecCCc
Confidence 777642 21 111110 112456666655442 22 23457999999999
Q ss_pred CcccccHhHHHHhhhhhhcCCceeEEEe-ee-cCCCCcCceEEEEEecCCCccccceEEEEec-c-cCcccCCCCCCCCC
Q 003559 448 VVAATDLTLLALAGIGLHHGKKLGFASC-KR-SSGATEGINVLIEKKNLDGKWAYGLSCIEYT-E-FDKFGITRGPFSSN 523 (811)
Q Consensus 448 ~La~vDP~~l~flG~~~~~~~~~~~~~v-vR-K~~~~e~vGvL~~~r~~dGk~~~~~~vVEYs-E-l~~~~~~~~~~~dg 523 (811)
++...+ .+-.++-.. ..+.++.+.+. .. +.....+-|.+...++.+|+ .+.++ . ++.+ .+. .+.
T Consensus 147 PlI~~~-tI~~li~~~-~~~~~~iv~t~~~~~~~~~~~~ygrv~vv~~~~g~------alyfsr~~Ipe~--kd~--~~~ 214 (293)
T PLN02917 147 PLIEPE-IIDGVVKAL-QAAPDAVFSTAVTSLKPEDASDPNRVKCVVDNQGY------AIYFSRGLIPYN--KSG--KVN 214 (293)
T ss_pred CCCCHH-HHHHHHHHH-HhcCCceEEEEeeecCHHHhcCCCceEEEECCCCe------EEEeecCcCCcC--CCc--ccc
Confidence 998863 222233332 23344444332 11 22111233444211234564 23333 2 2222 111 111
Q ss_pred CcccccccceeeeeEeHHHHHhhhc
Q 003559 524 GLQADFPANTNILYVDLASAELVGS 548 (811)
Q Consensus 524 ~l~s~f~~Ninn~~fsL~~L~~vl~ 548 (811)
+. ..+-.|+....|+.++|. .+.
T Consensus 215 ~~-~i~~~n~Giy~f~~~~L~-~l~ 237 (293)
T PLN02917 215 PQ-FPYLLHLGIQSYDAKFLK-IYP 237 (293)
T ss_pred cc-cceEEEEEEEEeCHHHHH-HHH
Confidence 11 113349999999999999 544
No 72
>cd02503 MobA MobA catalyzes the formation of molybdopterin guanine dinucleotide. The prokaryotic enzyme molybdopterin-guanine dinucleotide biosynthesis protein A (MobA). All mononuclear molybdoenzymes bind molybdenum in complex with an organic cofactor termed molybdopterin (MPT). In many bacteria, including Escherichia coli, molybdopterin can be further modified by attachment of a GMP group to the terminal phosphate of molybdopterin to form molybdopterin guanine dinucleotide (MGD). This GMP attachment step is catalyzed by MobA, by linking a guanosine 5'-phosphate to MPT forming molybdopterin guanine dinucleotide. This reaction requires GTP, MgCl2, and the MPT form of the cofactor. It is a reaction unique to prokaryotes, and therefore may represent a potential drug target.
Probab=95.34 E-value=0.014 Score=57.91 Aligned_cols=48 Identities=25% Similarity=0.416 Sum_probs=38.1
Q ss_pred EEEEecCCccccCCCCCCCCCceeeccccCCCCCcchHHHHHHHHHHHHHhHhhcCCcccceEEEecCC
Q 003559 290 GEIYPLGGSADRLGLVDHETGECLPAAMLPYCGRTLLEGLIRDLQAREFLYFKLYGKQCITPVAIMTSS 358 (811)
Q Consensus 290 avVlLAGGlGTRLG~~~pKgg~~lpV~l~p~sgkTlLql~~e~I~~lq~La~~~~g~~~~IPl~IMTS~ 358 (811)
+.|+||||.|+|||. ||. ++++ .|+++++..++++... .-+++|-|+.
T Consensus 2 ~~iILAgG~s~Rmg~--~K~--ll~~-----~g~~ll~~~i~~l~~~------------~~~iivv~~~ 49 (181)
T cd02503 2 TGVILAGGKSRRMGG--DKA--LLEL-----GGKPLLEHVLERLKPL------------VDEVVISANR 49 (181)
T ss_pred cEEEECCCccccCCC--Cce--eeEE-----CCEEHHHHHHHHHHhh------------cCEEEEECCC
Confidence 568999999999996 898 8887 6899999999887642 1246677776
No 73
>TIGR00453 ispD 2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase. Members of this protein family are 2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase, the IspD protein of the deoxyxylulose pathway of IPP biosynthesis. In about twenty percent of bacterial genomes, this protein occurs as IspDF, a bifunctional fusion protein.
Probab=95.21 E-value=0.015 Score=59.41 Aligned_cols=38 Identities=29% Similarity=0.408 Sum_probs=33.7
Q ss_pred EEEecCCccccCCCCCCCCCceeeccccCCCCCcchHHHHHHHHH
Q 003559 291 EIYPLGGSADRLGLVDHETGECLPAAMLPYCGRTLLEGLIRDLQA 335 (811)
Q Consensus 291 vVlLAGGlGTRLG~~~pKgg~~lpV~l~p~sgkTlLql~~e~I~~ 335 (811)
.|+||||.|+|||.+.||- ++++ .|+++++..++++..
T Consensus 2 aiIlAaG~s~R~~~~~~K~--l~~l-----~gkpll~~~l~~l~~ 39 (217)
T TIGR00453 2 AVIPAAGRGTRFGSGVPKQ--YLEL-----GGRPLLEHTLDAFLA 39 (217)
T ss_pred EEEEcCcccccCCCCCCcc--EeEE-----CCeEHHHHHHHHHhc
Confidence 5899999999999878998 8887 689999999988865
No 74
>cd02516 CDP-ME_synthetase CDP-ME synthetase is involved in mevalonate-independent isoprenoid production. 4-diphosphocytidyl-2-methyl-D-erythritol synthase (CDP-ME), also called 2C-methyl-d-erythritol 4-phosphate cytidylyltransferase catalyzes the third step in the alternative (non-mevalonate) pathway of Isopentenyl diphosphate (IPP) biosynthesis: the formation of 4-diphosphocytidyl-2C-methyl-D-erythritol from CTP and 2C-methyl-D-erythritol 4-phosphate. This mevalonate independent pathway that utilizes pyruvate and glyceraldehydes 3-phosphate as starting materials for production of IPP occurs in a variety of bacteria, archaea and plant cells, but is absent in mammals. Thus, CDP-ME synthetase is an attractive targets for the structure-based design of selective antibacterial, herbicidal and antimalarial drugs.
Probab=95.14 E-value=0.017 Score=58.87 Aligned_cols=41 Identities=24% Similarity=0.332 Sum_probs=35.3
Q ss_pred EEEEEecCCccccCCCCCCCCCceeeccccCCCCCcchHHHHHHHHHH
Q 003559 289 LGEIYPLGGSADRLGLVDHETGECLPAAMLPYCGRTLLEGLIRDLQAR 336 (811)
Q Consensus 289 vavVlLAGGlGTRLG~~~pKgg~~lpV~l~p~sgkTlLql~~e~I~~l 336 (811)
++.|+||||.|+|||...||- ++|+ .|+++++..++++...
T Consensus 1 ~~~vILAaG~s~R~~~~~~K~--l~~i-----~Gkpll~~~i~~l~~~ 41 (218)
T cd02516 1 VAAIILAAGSGSRMGADIPKQ--FLEL-----GGKPVLEHTLEAFLAH 41 (218)
T ss_pred CEEEEECCcccccCCCCCCcc--eeEE-----CCeEHHHHHHHHHhcC
Confidence 357899999999999778998 8887 6999999999988653
No 75
>PRK14490 putative bifunctional molybdopterin-guanine dinucleotide biosynthesis protein MobB/MobA; Provisional
Probab=95.08 E-value=0.036 Score=62.30 Aligned_cols=40 Identities=20% Similarity=0.235 Sum_probs=34.1
Q ss_pred CcEEEEEecCCccccCCCCCCCCCceeeccccCCCCCcchHHHHHHHHH
Q 003559 287 PELGEIYPLGGSADRLGLVDHETGECLPAAMLPYCGRTLLEGLIRDLQA 335 (811)
Q Consensus 287 ~kvavVlLAGGlGTRLG~~~pKgg~~lpV~l~p~sgkTlLql~~e~I~~ 335 (811)
.+++.|+||||+|+||| .+|. ++++ .|+|+++..++.+..
T Consensus 173 ~~i~~iILAGG~SsRmG--~~K~--ll~~-----~Gk~ll~~~l~~l~~ 212 (369)
T PRK14490 173 VPLSGLVLAGGRSSRMG--SDKA--LLSY-----HESNQLVHTAALLRP 212 (369)
T ss_pred CCceEEEEcCCccccCC--CCcE--EEEE-----CCccHHHHHHHHHHh
Confidence 36789999999999999 4898 8876 699999998888754
No 76
>PRK00155 ispD 2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase; Reviewed
Probab=95.07 E-value=0.021 Score=59.08 Aligned_cols=41 Identities=27% Similarity=0.442 Sum_probs=36.4
Q ss_pred cEEEEEecCCccccCCCCCCCCCceeeccccCCCCCcchHHHHHHHHH
Q 003559 288 ELGEIYPLGGSADRLGLVDHETGECLPAAMLPYCGRTLLEGLIRDLQA 335 (811)
Q Consensus 288 kvavVlLAGGlGTRLG~~~pKgg~~lpV~l~p~sgkTlLql~~e~I~~ 335 (811)
+++.|+||||.|+|||...||- ++++ .|+++++..++++..
T Consensus 3 ~~~~iILAaG~s~R~g~~~~K~--l~~~-----~g~pli~~~l~~l~~ 43 (227)
T PRK00155 3 MVYAIIPAAGKGSRMGADRPKQ--YLPL-----GGKPILEHTLEAFLA 43 (227)
T ss_pred ceEEEEEcCccccccCCCCCce--eeEE-----CCEEHHHHHHHHHHc
Confidence 5778999999999999888998 8887 689999999988765
No 77
>TIGR03202 pucB xanthine dehydrogenase accessory protein pucB. In Bacillus subtilis the expression of this protein, located in an operon with the structural subunits of xanthine dehydrogenase, has been found to be essential for XDH activity. Some members of this family appear to have a distant relationship to the MobA protein involved in molybdopterin biosynthesis, although this may be coincidental.
Probab=95.05 E-value=0.02 Score=57.48 Aligned_cols=37 Identities=24% Similarity=0.343 Sum_probs=31.0
Q ss_pred EEEEecCCccccCCCCCCCCCceeeccccCCCCCcchHHHHHHHHH
Q 003559 290 GEIYPLGGSADRLGLVDHETGECLPAAMLPYCGRTLLEGLIRDLQA 335 (811)
Q Consensus 290 avVlLAGGlGTRLG~~~pKgg~~lpV~l~p~sgkTlLql~~e~I~~ 335 (811)
+.|+||||.|+|||. +|. ++++ .|+++++..++.+++
T Consensus 2 ~~vILAgG~s~Rmg~--~K~--ll~~-----~g~~ll~~~i~~~~~ 38 (190)
T TIGR03202 2 VAIYLAAGQSRRMGE--NKL--ALPL-----GETTLGSASLKTALS 38 (190)
T ss_pred eEEEEcCCccccCCC--Cce--ecee-----CCccHHHHHHHHHHh
Confidence 468999999999995 688 8776 799999998887654
No 78
>PRK02726 molybdopterin-guanine dinucleotide biosynthesis protein A; Provisional
Probab=95.04 E-value=0.022 Score=58.40 Aligned_cols=39 Identities=31% Similarity=0.430 Sum_probs=33.8
Q ss_pred cEEEEEecCCccccCCCCCCCCCceeeccccCCCCCcchHHHHHHHHH
Q 003559 288 ELGEIYPLGGSADRLGLVDHETGECLPAAMLPYCGRTLLEGLIRDLQA 335 (811)
Q Consensus 288 kvavVlLAGGlGTRLG~~~pKgg~~lpV~l~p~sgkTlLql~~e~I~~ 335 (811)
+++.|+||||.|+|||. +|. ++++ .|+|+++..++.+..
T Consensus 7 ~~~~vILAgG~s~Rmg~--~K~--ll~~-----~g~~ll~~~i~~l~~ 45 (200)
T PRK02726 7 NLVALILAGGKSSRMGQ--DKA--LLPW-----QGVPLLQRVARIAAA 45 (200)
T ss_pred CceEEEEcCCCcccCCC--Cce--eeEE-----CCEeHHHHHHHHHHh
Confidence 67889999999999995 688 8887 689999999988753
No 79
>PRK00317 mobA molybdopterin-guanine dinucleotide biosynthesis protein MobA; Reviewed
Probab=95.02 E-value=0.022 Score=57.34 Aligned_cols=39 Identities=21% Similarity=0.353 Sum_probs=33.5
Q ss_pred cEEEEEecCCccccCCCCCCCCCceeeccccCCCCCcchHHHHHHHH
Q 003559 288 ELGEIYPLGGSADRLGLVDHETGECLPAAMLPYCGRTLLEGLIRDLQ 334 (811)
Q Consensus 288 kvavVlLAGGlGTRLG~~~pKgg~~lpV~l~p~sgkTlLql~~e~I~ 334 (811)
++..|+||||.|+||| ..+|. ++++ .|+++++..++.+.
T Consensus 3 ~~~~vILA~G~s~Rm~-~~~K~--ll~~-----~g~~ll~~~i~~l~ 41 (193)
T PRK00317 3 PITGVILAGGRSRRMG-GVDKG--LQEL-----NGKPLIQHVIERLA 41 (193)
T ss_pred CceEEEEcCCCcccCC-CCCCc--eeEE-----CCEEHHHHHHHHHh
Confidence 5788999999999996 36898 8887 68999999998875
No 80
>TIGR01099 galU UTP-glucose-1-phosphate uridylyltransferase. Built to distinquish between the highly similar genes galU and galF
Probab=94.82 E-value=0.046 Score=57.52 Aligned_cols=61 Identities=18% Similarity=0.316 Sum_probs=47.9
Q ss_pred EEEecCCccccCCC---CCCCCCceeeccccCCCCCcchHHHHHHHHHHHHHhHhhcCCcccceEEEecCCCCCchHHHH
Q 003559 291 EIYPLGGSADRLGL---VDHETGECLPAAMLPYCGRTLLEGLIRDLQAREFLYFKLYGKQCITPVAIMTSSAKNNHERIT 367 (811)
Q Consensus 291 vVlLAGGlGTRLG~---~~pKgg~~lpV~l~p~sgkTlLql~~e~I~~lq~La~~~~g~~~~IPl~IMTS~~~~Th~~T~ 367 (811)
+|+||||.||||+- ..||. ++|+ .|++++++.++.+... | .-.++|+|.. ..+...
T Consensus 3 avIlAaG~gtRl~plt~~~pK~--llpi-----~g~pli~~~l~~l~~~--------g---i~~v~iv~~~---~~~~i~ 61 (260)
T TIGR01099 3 AVIPAAGLGTRFLPATKAIPKE--MLPI-----VDKPLIQYVVEEAVEA--------G---IEDILIVTGR---GKRAIE 61 (260)
T ss_pred EEEEcccCcccCCCcccCCCce--eEEE-----CCEEHHHHHHHHHHhC--------C---CCEEEEEeCC---cHHHHH
Confidence 58999999999974 78998 9887 5789999988877542 3 2257888887 677788
Q ss_pred HHHHH
Q 003559 368 SLCER 372 (811)
Q Consensus 368 ~fle~ 372 (811)
++|.+
T Consensus 62 ~~~~~ 66 (260)
T TIGR01099 62 DHFDT 66 (260)
T ss_pred HHhcc
Confidence 88863
No 81
>COG1209 RfbA dTDP-glucose pyrophosphorylase [Cell envelope biogenesis, outer membrane]
Probab=94.65 E-value=0.68 Score=50.48 Aligned_cols=158 Identities=19% Similarity=0.147 Sum_probs=95.4
Q ss_pred EEecCCccccCC---CCCCCCCceeeccccCCCCCcchHHHHHHHHHHHHHhHhhcCCcccceEEEecCCCCCchHHHHH
Q 003559 292 IYPLGGSADRLG---LVDHETGECLPAAMLPYCGRTLLEGLIRDLQAREFLYFKLYGKQCITPVAIMTSSAKNNHERITS 368 (811)
Q Consensus 292 VlLAGGlGTRLG---~~~pKgg~~lpV~l~p~sgkTlLql~~e~I~~lq~La~~~~g~~~~IPl~IMTS~~~~Th~~T~~ 368 (811)
|+||||.||||- +..||- ++|| -+|..+++-++++... | .--++|.++. .+-...++
T Consensus 4 iILAgG~GTRL~PlT~~~~Kq--LlpV-----~~KPmi~y~l~~L~~a--------G---I~dI~II~~~--~~~~~~~~ 63 (286)
T COG1209 4 VILAGGSGTRLRPLTRVVPKQ--LLPV-----YDKPMIYYPLETLMLA--------G---IRDILIVVGP--EDKPTFKE 63 (286)
T ss_pred EEecCcCccccccccccCCcc--ccee-----cCcchhHhHHHHHHHc--------C---CceEEEEecC--Cchhhhhh
Confidence 689999999986 578888 8887 5789999999888664 4 2235666666 45666666
Q ss_pred HHHHhCCCCCCCCceEEEecCCeeeEecCCCcccccCCCCccccCCCCcHHHHHHHhcCchHHHHHcCceEEEEEeCCCC
Q 003559 369 LCERLRWFGRGQSSFQLFEQPLVPAVDAEDGQWLVMRPFAPVCKPGGHGAIWKLAHDKGIFKWFHDNGRKGATVRQVSNV 448 (811)
Q Consensus 369 fle~n~yFGl~~~qV~~F~Q~~vP~l~~~dgki~l~~~~~l~~~P~GhGdIy~aL~~sGlLd~l~~~Gikyi~v~~vDN~ 448 (811)
++-+-..||+ +++.-.| -.|.|=++-+. +-+++. |-+-..++--||+
T Consensus 64 llGdgs~~gv---~itY~~Q----------------------~~p~GlA~Av~------~a~~fv--~~~~f~l~LGDNi 110 (286)
T COG1209 64 LLGDGSDFGV---DITYAVQ----------------------PEPDGLAHAVL------IAEDFV--GDDDFVLYLGDNI 110 (286)
T ss_pred hhcCccccCc---ceEEEec----------------------CCCCcHHHHHH------HHHhhc--CCCceEEEecCce
Confidence 6666688887 4544444 34666555443 223332 4456778999999
Q ss_pred ccc-ccHhHHHHhhhhhhcCCceeEEEeeecCCCCcCceEEEEEecCCCccccceEEEEecccCcc
Q 003559 449 VAA-TDLTLLALAGIGLHHGKKLGFASCKRSSGATEGINVLIEKKNLDGKWAYGLSCIEYTEFDKF 513 (811)
Q Consensus 449 La~-vDP~~l~flG~~~~~~~~~~~~~vvRK~~~~e~vGvL~~~r~~dGk~~~~~~vVEYsEl~~~ 513 (811)
+.. +.+. +--+...+. +.....++....+.-||+-. ..||+ -+.++|=-+.|+.
T Consensus 111 ~~~~l~~~----~~~~~~~~~--ga~i~~~~V~dP~rfGV~e~--d~~~~---v~~l~EKP~~P~S 165 (286)
T COG1209 111 FQDGLSEL----LEHFAEEGS--GATILLYEVDDPSRYGVVEF--DEDGK---VIGLEEKPKEPKS 165 (286)
T ss_pred eccChHHH----HHHHhccCC--CcEEEEEEcCCcccceEEEE--cCCCc---EEEeEECCCCCCC
Confidence 888 2332 222333222 33332333333456677754 23565 2456665444444
No 82
>PRK14489 putative bifunctional molybdopterin-guanine dinucleotide biosynthesis protein MobA/MobB; Provisional
Probab=94.49 E-value=0.04 Score=61.93 Aligned_cols=40 Identities=18% Similarity=0.387 Sum_probs=34.8
Q ss_pred CcEEEEEecCCccccCCCCCCCCCceeeccccCCCCCcchHHHHHHHH
Q 003559 287 PELGEIYPLGGSADRLGLVDHETGECLPAAMLPYCGRTLLEGLIRDLQ 334 (811)
Q Consensus 287 ~kvavVlLAGGlGTRLG~~~pKgg~~lpV~l~p~sgkTlLql~~e~I~ 334 (811)
.+++.|+||||+|+||| ..||. ++++ .|+|+++..++.+.
T Consensus 4 ~~i~~VILAgG~s~Rmg-g~~K~--ll~i-----~Gkpll~~~i~~l~ 43 (366)
T PRK14489 4 SQIAGVILAGGLSRRMN-GRDKA--LILL-----GGKPLIERVVDRLR 43 (366)
T ss_pred CCceEEEEcCCcccCCC-CCCCc--eeEE-----CCeeHHHHHHHHHH
Confidence 46889999999999996 37898 8887 68999999998875
No 83
>COG1208 GCD1 Nucleoside-diphosphate-sugar pyrophosphorylase involved in lipopolysaccharide biosynthesis/translation initiation factor 2B, gamma/epsilon subunits (eIF-2Bgamma/eIF-2Bepsilon) [Cell envelope biogenesis, outer membrane / Translation, ribosomal structure and biogenesis]
Probab=93.94 E-value=0.16 Score=57.06 Aligned_cols=178 Identities=19% Similarity=0.173 Sum_probs=104.7
Q ss_pred EEEEecCCccccCC---CCCCCCCceeeccccCCCCCcchHHHHHHHHHHHHHhHhhcCCcccceEEEecCCCCCchHHH
Q 003559 290 GEIYPLGGSADRLG---LVDHETGECLPAAMLPYCGRTLLEGLIRDLQAREFLYFKLYGKQCITPVAIMTSSAKNNHERI 366 (811)
Q Consensus 290 avVlLAGGlGTRLG---~~~pKgg~~lpV~l~p~sgkTlLql~~e~I~~lq~La~~~~g~~~~IPl~IMTS~~~~Th~~T 366 (811)
-.|+||||.||||- .+.||- |+|| -||.+++++++.+.+ +| .--++|.+.. ..+.+
T Consensus 3 kavILagG~GtRLrPlT~~~PKP--llpI-----~gkPii~~~l~~L~~--------~G---v~eivi~~~y---~~~~i 61 (358)
T COG1208 3 KAVILAGGYGTRLRPLTDDRPKP--LLPI-----AGKPLIEYVLEALAA--------AG---VEEIVLVVGY---LGEQI 61 (358)
T ss_pred eEEEEeCCccccccccccCCCcc--ccee-----CCccHHHHHHHHHHH--------CC---CcEEEEEecc---chHHH
Confidence 46789999999997 478999 9988 589999999988855 24 3345666665 78899
Q ss_pred HHHHHHhCCCCCCCCceEEEecCCeeeEecCCCcccccCCCCccccCCCCcH-HHHHHHhcCchHHHHHcCceEEEEEeC
Q 003559 367 TSLCERLRWFGRGQSSFQLFEQPLVPAVDAEDGQWLVMRPFAPVCKPGGHGA-IWKLAHDKGIFKWFHDNGRKGATVRQV 445 (811)
Q Consensus 367 ~~fle~n~yFGl~~~qV~~F~Q~~vP~l~~~dgki~l~~~~~l~~~P~GhGd-Iy~aL~~sGlLd~l~~~Gikyi~v~~v 445 (811)
.++|.+...+|+ +|.+..|.. |-|-|+ +..++.. + +.+-.+|.+-
T Consensus 62 ~~~~~d~~~~~~---~I~y~~e~~----------------------~lGTag~l~~a~~~------l---~~~~f~v~~G 107 (358)
T COG1208 62 EEYFGDGEGLGV---RITYVVEKE----------------------PLGTAGALKNALDL------L---GGDDFLVLNG 107 (358)
T ss_pred HHHHhcccccCC---ceEEEecCC----------------------cCccHHHHHHHHHh------c---CCCcEEEEEC
Confidence 999998766665 444333332 444333 3333321 1 1166788888
Q ss_pred CCCcccccHhHHHHhhhhhhcCCceeEEEeeecCCCCcCceEEEEEecCCCccccceEEEEecccCcccCCCCCCCCCCc
Q 003559 446 SNVVAATDLTLLALAGIGLHHGKKLGFASCKRSSGATEGINVLIEKKNLDGKWAYGLSCIEYTEFDKFGITRGPFSSNGL 525 (811)
Q Consensus 446 DN~La~vDP~~l~flG~~~~~~~~~~~~~vvRK~~~~e~vGvL~~~r~~dGk~~~~~~vVEYsEl~~~~~~~~~~~dg~l 525 (811)
|++--. | +-.++.+...+++...+. .++...+ ..-|++.. .++. -.++++.|-|... ....
T Consensus 108 Dv~~~~-d--l~~l~~~~~~~~~~~~~~-~~~~~~~-~~~Gvv~~---~~~~----~~v~~f~ekp~~~-----~~~~-- 168 (358)
T COG1208 108 DVLTDL-D--LSELLEFHKKKGALATIA-LTRVLDP-SEFGVVET---DDGD----GRVVEFREKPGPE-----EPPS-- 168 (358)
T ss_pred Ceeecc-C--HHHHHHHHHhccCccEEE-EEecCCC-CcCceEEe---cCCC----ceEEEEEecCCCC-----CCCC--
Confidence 876544 2 223355655553333333 3555544 34456543 2121 2466666665321 0000
Q ss_pred ccccccceeeeeEeHHHHH
Q 003559 526 QADFPANTNILYVDLASAE 544 (811)
Q Consensus 526 ~s~f~~Ninn~~fsL~~L~ 544 (811)
.-.|+...+|+-+.++
T Consensus 169 ---~~in~Giyi~~~~v~~ 184 (358)
T COG1208 169 ---NLINAGIYIFDPEVFD 184 (358)
T ss_pred ---ceEEeEEEEECHHHhh
Confidence 1237777777766665
No 84
>PRK14500 putative bifunctional molybdopterin-guanine dinucleotide biosynthesis protein MoaC/MobA; Provisional
Probab=93.91 E-value=0.05 Score=60.96 Aligned_cols=39 Identities=23% Similarity=0.257 Sum_probs=33.0
Q ss_pred cEEEEEecCCccccCCCCCCCCCceeeccccCCCCCcchHHHHHHHHH
Q 003559 288 ELGEIYPLGGSADRLGLVDHETGECLPAAMLPYCGRTLLEGLIRDLQA 335 (811)
Q Consensus 288 kvavVlLAGGlGTRLG~~~pKgg~~lpV~l~p~sgkTlLql~~e~I~~ 335 (811)
.+..|+||||+|+||| .+|. ++++ .|+|+++..++++..
T Consensus 160 ~i~~IILAGGkSsRMG--~dKa--LL~~-----~GkpLl~~~ie~l~~ 198 (346)
T PRK14500 160 PLYGLVLTGGKSRRMG--KDKA--LLNY-----QGQPHAQYLYDLLAK 198 (346)
T ss_pred CceEEEEeccccccCC--CCcc--ccee-----CCccHHHHHHHHHHh
Confidence 5678999999999999 5888 8776 699999998877654
No 85
>cd02541 UGPase_prokaryotic Prokaryotic UGPase catalyses the synthesis of UDP-glucose. Prokaryotic UDP-Glucose Pyrophosphorylase (UGPase) catalyzes a reversible production of UDP-Glucose and pyrophosphate (PPi) from glucose-1-phosphate and UTP. UDP-glucose plays pivotal roles in galactose utilization, in glycogen synthesis, and in the synthesis of the carbohydrate moieties of glycolipids , glycoproteins , and proteoglycans. UGPase is found in both prokaryotes and eukaryotes, although prokaryotic and eukaryotic forms of UGPase catalyze the same reaction, they share low sequence similarity.
Probab=93.88 E-value=0.09 Score=55.62 Aligned_cols=61 Identities=20% Similarity=0.352 Sum_probs=47.4
Q ss_pred EEEecCCccccCCC---CCCCCCceeeccccCCCCCcchHHHHHHHHHHHHHhHhhcCCcccceEEEecCCCCCchHHHH
Q 003559 291 EIYPLGGSADRLGL---VDHETGECLPAAMLPYCGRTLLEGLIRDLQAREFLYFKLYGKQCITPVAIMTSSAKNNHERIT 367 (811)
Q Consensus 291 vVlLAGGlGTRLG~---~~pKgg~~lpV~l~p~sgkTlLql~~e~I~~lq~La~~~~g~~~~IPl~IMTS~~~~Th~~T~ 367 (811)
+|+||||.||||+- ..||. ++|+ .|++++++.++.+.+. | .-.++|.|.. ..+.+.
T Consensus 3 aiIlAaG~gtRl~plt~~~pK~--llpv-----~gkpli~~~l~~l~~~--------g---i~~i~iv~~~---~~~~i~ 61 (267)
T cd02541 3 AVIPAAGLGTRFLPATKAIPKE--MLPI-----VDKPVIQYIVEEAVAA--------G---IEDIIIVTGR---GKRAIE 61 (267)
T ss_pred EEEEcCCCCccCCCcccCCCce--eeEE-----CCEEHHHHHHHHHHHC--------C---CCEEEEEeCC---chHHHH
Confidence 58899999999973 68998 9887 5789999999887652 3 2256788886 667788
Q ss_pred HHHHH
Q 003559 368 SLCER 372 (811)
Q Consensus 368 ~fle~ 372 (811)
++|..
T Consensus 62 ~~~~~ 66 (267)
T cd02541 62 DHFDR 66 (267)
T ss_pred HHhCC
Confidence 88754
No 86
>COG1211 IspD 4-diphosphocytidyl-2-methyl-D-erithritol synthase [Lipid metabolism]
Probab=93.67 E-value=0.12 Score=55.09 Aligned_cols=65 Identities=18% Similarity=0.270 Sum_probs=48.9
Q ss_pred cEEEEEecCCccccCCCCCCCCCceeeccccCCCCCcchHHHHHHHHHHHHHhHhhcCCcccceEEEecCCCCCchHHHH
Q 003559 288 ELGEIYPLGGSADRLGLVDHETGECLPAAMLPYCGRTLLEGLIRDLQAREFLYFKLYGKQCITPVAIMTSSAKNNHERIT 367 (811)
Q Consensus 288 kvavVlLAGGlGTRLG~~~pKgg~~lpV~l~p~sgkTlLql~~e~I~~lq~La~~~~g~~~~IPl~IMTS~~~~Th~~T~ 367 (811)
++..|+||+|.|||||.+.||- -+++ .|+++|+..++-.+... .-=.++|.++. +-+....
T Consensus 4 ~~~~vilAaG~G~R~~~~~pKq--~l~l-----~g~pll~~tl~~f~~~~----------~i~~Ivvv~~~--~~~~~~~ 64 (230)
T COG1211 4 MVSAVILAAGFGSRMGNPVPKQ--YLEL-----GGRPLLEHTLEAFLESP----------AIDEIVVVVSP--EDDPYFE 64 (230)
T ss_pred eEEEEEEcCccccccCCCCCce--EEEE-----CCEEehHHHHHHHHhCc----------CCCeEEEEECh--hhhHHHH
Confidence 5788999999999999999998 7776 79999998888777653 12246667766 4555555
Q ss_pred HHHH
Q 003559 368 SLCE 371 (811)
Q Consensus 368 ~fle 371 (811)
++.+
T Consensus 65 ~~~~ 68 (230)
T COG1211 65 KLPK 68 (230)
T ss_pred Hhhh
Confidence 5554
No 87
>PRK09382 ispDF bifunctional 2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase/2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase protein; Provisional
Probab=93.56 E-value=0.064 Score=60.79 Aligned_cols=43 Identities=14% Similarity=0.261 Sum_probs=37.2
Q ss_pred CcEEEEEecCCccccCCCCCCCCCceeeccccCCCCCcchHHHHHHHHHH
Q 003559 287 PELGEIYPLGGSADRLGLVDHETGECLPAAMLPYCGRTLLEGLIRDLQAR 336 (811)
Q Consensus 287 ~kvavVlLAGGlGTRLG~~~pKgg~~lpV~l~p~sgkTlLql~~e~I~~l 336 (811)
.+++.|+||||.|+|||...||- ++++ .|+++++..++.+.+.
T Consensus 4 m~v~aIILAAG~GsRmg~~~pKq--ll~l-----~GkPll~~tl~~l~~~ 46 (378)
T PRK09382 4 SDISLVIVAAGRSTRFSAEVKKQ--WLRI-----GGKPLWLHVLENLSSA 46 (378)
T ss_pred CcceEEEECCCCCccCCCCCCee--EEEE-----CCeeHHHHHHHHHhcC
Confidence 36788999999999999889999 8887 6999999988887653
No 88
>COG0448 GlgC ADP-glucose pyrophosphorylase [Carbohydrate transport and metabolism]
Probab=93.26 E-value=0.91 Score=51.74 Aligned_cols=200 Identities=16% Similarity=0.178 Sum_probs=117.4
Q ss_pred CcEEEEEecCCccccCCC---CCCCCCceeeccccCCCCCcchHHHHHHHHHHHHHhHhhcCCcccceEEEecCCCCCch
Q 003559 287 PELGEIYPLGGSADRLGL---VDHETGECLPAAMLPYCGRTLLEGLIRDLQAREFLYFKLYGKQCITPVAIMTSSAKNNH 363 (811)
Q Consensus 287 ~kvavVlLAGGlGTRLG~---~~pKgg~~lpV~l~p~sgkTlLql~~e~I~~lq~La~~~~g~~~~IPl~IMTS~~~~Th 363 (811)
+++-.++||||+|+||+- ..+|- .+|.+ ...-+.|+.+-... ..| .--+.+.|=. .+|
T Consensus 4 ~~~laiILaGg~G~rL~~LT~~Rakp--AVpFg----GkYRiIDF~LSN~v--------NSG---i~~I~VltQy--~~~ 64 (393)
T COG0448 4 KNVLAIILAGGRGSRLSPLTKDRAKP--AVPFG----GKYRIIDFALSNCV--------NSG---IRRIGVLTQY--KSH 64 (393)
T ss_pred cceEEEEEcCCCCCccchhhhCcccc--ccccC----ceeEEEeEEccccc--------ccC---CCeEEEEecc--chh
Confidence 467888999999999984 45555 55543 22223333222211 112 3356777777 566
Q ss_pred HHHHHHHHHhCCCCCC--CCceEEEecCCeeeEecCCCcccccCCCCccccCCCCcHHHHHHHhcCchHHHHHcCceEEE
Q 003559 364 ERITSLCERLRWFGRG--QSSFQLFEQPLVPAVDAEDGQWLVMRPFAPVCKPGGHGAIWKLAHDKGIFKWFHDNGRKGAT 441 (811)
Q Consensus 364 ~~T~~fle~n~yFGl~--~~qV~~F~Q~~vP~l~~~dgki~l~~~~~l~~~P~GhGdIy~aL~~sGlLd~l~~~Gikyi~ 441 (811)
.-.+++..-..|+++ .+.|+++.+.+- .++ -.|.-.+-=.+|.- +..+.+-+-+|+.
T Consensus 65 -SL~~Hi~~G~~w~l~~~~~~v~ilp~~~~-----~~~---------~~wy~Gtadai~Qn------l~~i~~~~~eyvl 123 (393)
T COG0448 65 -SLNDHIGRGWPWDLDRKNGGVFILPAQQR-----EGG---------ERWYEGTADAIYQN------LLIIRRSDPEYVL 123 (393)
T ss_pred -HHHHHhhCCCccccccccCcEEEeCchhc-----cCC---------CcceeccHHHHHHh------HHHHHhcCCCEEE
Confidence 555666665555554 344544432211 011 11222222223322 4556688999999
Q ss_pred EEeCCCCcccccHhHHHHhhhhhhcCCceeEEE--eeecCCCCcCceEEEEEecCCCccccceEEEEecccCcccCCCCC
Q 003559 442 VRQVSNVVAATDLTLLALAGIGLHHGKKLGFAS--CKRSSGATEGINVLIEKKNLDGKWAYGLSCIEYTEFDKFGITRGP 519 (811)
Q Consensus 442 v~~vDN~La~vDP~~l~flG~~~~~~~~~~~~~--vvRK~~~~e~vGvL~~~r~~dGk~~~~~~vVEYsEl~~~~~~~~~ 519 (811)
+.+.|=+ .++|..- ++-.+...++++.+.+ |+++ .+..-|++-. ..+|+ ++|+.|=|.+.
T Consensus 124 IlsgDhI-YkmDy~~--ml~~H~~~gadiTv~~~~Vp~~--eas~fGim~~--D~~~~------i~~F~eKp~~~----- 185 (393)
T COG0448 124 ILSGDHI-YKMDYSD--MLDFHIESGADVTVAVKEVPRE--EASRFGVMNV--DENGR------IIEFVEKPADG----- 185 (393)
T ss_pred EecCCEE-EecCHHH--HHHHHHHcCCCEEEEEEECChH--hhhhcCceEE--CCCCC------EEeeeeccCcC-----
Confidence 9999864 4566653 3778999999999887 3443 2234676643 45666 77877766662
Q ss_pred CCCCCcccccccceeeeeEeHHHHHhhhcc
Q 003559 520 FSSNGLQADFPANTNILYVDLASAELVGSS 549 (811)
Q Consensus 520 ~~dg~l~s~f~~Ninn~~fsL~~L~~vl~~ 549 (811)
..+.++ +...+.+|+-+.|.++|++
T Consensus 186 ~~~~~l-----aSMgiYIf~~~~L~~~L~~ 210 (393)
T COG0448 186 PPSNSL-----ASMGIYIFNTDLLKELLEE 210 (393)
T ss_pred Ccccce-----eeeeeEEEcHHHHHHHHHH
Confidence 011111 4688999999999999985
No 89
>cd04183 GT2_BcE_like GT2_BcbE_like is likely involved in the biosynthesis of the polysaccharide capsule. GT2_BcbE_like: The bcbE gene is one of the genes in the capsule biosynthetic locus of Pasteurella multocida. Its deducted product is likely involved in the biosynthesis of the polysaccharide capsule, which is found on surface of a wide range of bacteria. It is a subfamily of Glycosyltransferase Family GT2, which includes diverse families of glycosyltransferases with a common GT-A type structural fold, which has two tightly associated beta/alpha/beta domains that tend to form a continuous central sheet of at least eight beta-strands. These are enzymes that catalyze the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds.
Probab=93.03 E-value=0.066 Score=55.13 Aligned_cols=38 Identities=21% Similarity=0.373 Sum_probs=31.7
Q ss_pred EEEecCCccccCC---CCCCCCCceeeccccCCCCCcchHHHHHHHHH
Q 003559 291 EIYPLGGSADRLG---LVDHETGECLPAAMLPYCGRTLLEGLIRDLQA 335 (811)
Q Consensus 291 vVlLAGGlGTRLG---~~~pKgg~~lpV~l~p~sgkTlLql~~e~I~~ 335 (811)
+|+||||.||||+ ...||. ++|+ .|+++++..++.+..
T Consensus 1 ~iIlAaG~g~Rl~plt~~~pK~--ll~i-----~g~pli~~~l~~l~~ 41 (231)
T cd04183 1 IIIPMAGLGSRFKKAGYTYPKP--LIEV-----DGKPMIEWVIESLAK 41 (231)
T ss_pred CEEECCcCCccccccCCCCCce--eeEE-----CCEEHHHHHHHhhhc
Confidence 4899999999995 378999 9887 588999998887754
No 90
>TIGR00466 kdsB 3-deoxy-D-manno-octulosonate cytidylyltransferase.
Probab=92.52 E-value=0.44 Score=50.33 Aligned_cols=88 Identities=15% Similarity=0.133 Sum_probs=52.1
Q ss_pred EEEecCCccccCCCCCCCCCceeeccccCCCCCcchHHHHHHHHHHH-----------HHh--HhhcCCcccceEEEecC
Q 003559 291 EIYPLGGSADRLGLVDHETGECLPAAMLPYCGRTLLEGLIRDLQARE-----------FLY--FKLYGKQCITPVAIMTS 357 (811)
Q Consensus 291 vVlLAGGlGTRLG~~~pKgg~~lpV~l~p~sgkTlLql~~e~I~~lq-----------~La--~~~~g~~~~IPl~IMTS 357 (811)
+|++|+|.||||+ +|- ++++ .|+++++..++++++.. ... .+.+| +. ++||+
T Consensus 2 ~iIpA~g~s~R~~---~K~--L~~l-----~GkPli~~~le~~~~~~~d~VvVvt~~~~i~~~~~~~g----~~-~v~~~ 66 (238)
T TIGR00466 2 VIIPARLASSRLP---GKP--LEDI-----FGKPMIVHVAENANESGADRCIVATDDESVAQTCQKFG----IE-VCMTS 66 (238)
T ss_pred EEEecCCCCCCCC---CCe--eccc-----CCcCHHHHHHHHHHhCCCCeEEEEeCHHHHHHHHHHcC----CE-EEEeC
Confidence 5889999999995 687 7766 79999999999876431 000 01122 33 45776
Q ss_pred CCCCchHHHHHHHHHhCCCCCCCCceEEEecCCeeeEe
Q 003559 358 SAKNNHERITSLCERLRWFGRGQSSFQLFEQPLVPAVD 395 (811)
Q Consensus 358 ~~~~Th~~T~~fle~n~yFGl~~~qV~~F~Q~~vP~l~ 395 (811)
. ....-|....+-.+...+...++.+..|+-.|.++
T Consensus 67 ~--~~~~Gt~r~~~~~~~l~~~~~d~Vli~~gD~Pli~ 102 (238)
T TIGR00466 67 K--HHNSGTERLAEVVEKLALKDDERIVNLQGDEPFIP 102 (238)
T ss_pred C--CCCChhHHHHHHHHHhCCCCCCEEEEEcCCcCcCC
Confidence 4 22222222222211111223466778888888887
No 91
>cd02507 eIF-2B_gamma_N_like The N-terminal of eIF-2B_gamma_like is predicted to have glycosyltransferase activity. N-terminal domain of eEIF-2B epsilon and gamma, subunits of eukaryotic translation initiators, is a subfamily of glycosyltranferase 2 and is predicted to have glycosyltranferase activity. eIF-2B is a guanine nucleotide-exchange factor which mediates the exchange of GDP (bound to initiation factor eIF2) for GTP, generating active eIF2.GTP complex. EIF2B is a complex multimeric protein consisting of five subunits named alpha, beta, gamma, delta and epsilon. Subunit epsilon shares sequence similarity with gamma subunit, and with a family of bifunctional nucleotide-binding enzymes such as ADP-glucose pyrophosphorylase, suggesting that epsilon subunit may play roles in nucleotide binding activity. In yeast, eIF2B gamma enhances the activity of eIF2B-epsilon leading to the idea that these subunits form the catalytic subcomplex.
Probab=92.51 E-value=0.23 Score=51.36 Aligned_cols=63 Identities=14% Similarity=0.167 Sum_probs=47.2
Q ss_pred EEEecCCccccCC---CCCCCCCceeeccccCCCCCcchHHHHHHHHHHHHHhHhhcCCcccceEEEecCCCCCchHHHH
Q 003559 291 EIYPLGGSADRLG---LVDHETGECLPAAMLPYCGRTLLEGLIRDLQAREFLYFKLYGKQCITPVAIMTSSAKNNHERIT 367 (811)
Q Consensus 291 vVlLAGGlGTRLG---~~~pKgg~~lpV~l~p~sgkTlLql~~e~I~~lq~La~~~~g~~~~IPl~IMTS~~~~Th~~T~ 367 (811)
.|+||||.|+||+ ...||. ++|+ .|++++++.++.+... | .--++|++.. ..+...
T Consensus 3 avIlagg~g~rl~plt~~~pK~--llpv-----~g~pli~~~l~~l~~~--------g---i~~i~vv~~~---~~~~~~ 61 (216)
T cd02507 3 AVVLADGFGSRFLPLTSDIPKA--LLPV-----ANVPLIDYTLEWLEKA--------G---VEEVFVVCCE---HSQAII 61 (216)
T ss_pred EEEEeCCCccccCccccCCCcc--cceE-----CCEEHHHHHHHHHHHC--------C---CCeEEEEeCC---cHHHHH
Confidence 4669999999997 378999 9887 5889999988776542 3 2247788887 566777
Q ss_pred HHHHHhC
Q 003559 368 SLCERLR 374 (811)
Q Consensus 368 ~fle~n~ 374 (811)
+++.+..
T Consensus 62 ~~~~~~~ 68 (216)
T cd02507 62 EHLLKSK 68 (216)
T ss_pred HHHHhcc
Confidence 7777644
No 92
>PRK13389 UTP--glucose-1-phosphate uridylyltransferase subunit GalU; Provisional
Probab=90.81 E-value=0.41 Score=52.59 Aligned_cols=62 Identities=21% Similarity=0.367 Sum_probs=48.4
Q ss_pred EEEEecCCccccCCC---CCCCCCceeeccccCCCCCcchHHHHHHHHHHHHHhHhhcCCcccceEEEecCCCCCchHHH
Q 003559 290 GEIYPLGGSADRLGL---VDHETGECLPAAMLPYCGRTLLEGLIRDLQAREFLYFKLYGKQCITPVAIMTSSAKNNHERI 366 (811)
Q Consensus 290 avVlLAGGlGTRLG~---~~pKgg~~lpV~l~p~sgkTlLql~~e~I~~lq~La~~~~g~~~~IPl~IMTS~~~~Th~~T 366 (811)
-.|++|||.||||+- ..||- ++|+ .|+++++..++.+... | .--++|.+.. ..+..
T Consensus 10 ~aiIlaaG~g~Rl~~~t~~~pK~--l~pv-----~g~pii~~~l~~l~~~--------g---i~~i~vv~~~---~~~~i 68 (302)
T PRK13389 10 KAVIPVAGLGTRMLPATKAIPKE--MLPL-----VDKPLIQYVVNECIAA--------G---ITEIVLVTHS---SKNSI 68 (302)
T ss_pred EEEEECCcCCccCCCccCCCCce--eeEE-----CCEEHHHHHHHHHHHC--------C---CCEEEEEeCC---CHHHH
Confidence 367889999999964 68998 9887 5889999998887653 3 2346777776 67888
Q ss_pred HHHHHH
Q 003559 367 TSLCER 372 (811)
Q Consensus 367 ~~fle~ 372 (811)
.++|..
T Consensus 69 ~~~~~~ 74 (302)
T PRK13389 69 ENHFDT 74 (302)
T ss_pred HHHHcc
Confidence 999864
No 93
>PRK15460 cpsB mannose-1-phosphate guanyltransferase; Provisional
Probab=90.34 E-value=0.45 Score=55.67 Aligned_cols=203 Identities=15% Similarity=0.142 Sum_probs=103.7
Q ss_pred EEEEEecCCccccCC-C---CCCCCCceeeccccCCCCCcchHHHHHHHHHHHHHhHhhcCCcccceEEEecCCCCCchH
Q 003559 289 LGEIYPLGGSADRLG-L---VDHETGECLPAAMLPYCGRTLLEGLIRDLQAREFLYFKLYGKQCITPVAIMTSSAKNNHE 364 (811)
Q Consensus 289 vavVlLAGGlGTRLG-~---~~pKgg~~lpV~l~p~sgkTlLql~~e~I~~lq~La~~~~g~~~~IPl~IMTS~~~~Th~ 364 (811)
+-.|+||||.||||= + ..||- ++|+. .++|+||..++++..+ + +.=++ |.|+. .-.+
T Consensus 6 ~~~vIlaGG~GtRlwPlS~~~~PKq--~l~l~----~~~sllq~t~~r~~~~--------~--~~~~i-ivt~~--~~~~ 66 (478)
T PRK15460 6 LYPVVMAGGSGSRLWPLSRVLYPKQ--FLCLK----GDLTMLQTTICRLNGV--------E--CESPV-VICNE--QHRF 66 (478)
T ss_pred eEEEEECCCCccccccCCCCCCCcc--eeECC----CCCCHHHHHHHHHHhC--------C--CCCcE-EEeCH--HHHH
Confidence 567899999999996 2 35998 99986 7799999999987654 2 23345 55887 3444
Q ss_pred HHHHHHHHhCCCCCCCCceEEEecCCeeeEecCCCcccccCCCCccccCCCCcHHHHHHHhcCchHHHHHc--C-ceEEE
Q 003559 365 RITSLCERLRWFGRGQSSFQLFEQPLVPAVDAEDGQWLVMRPFAPVCKPGGHGAIWKLAHDKGIFKWFHDN--G-RKGAT 441 (811)
Q Consensus 365 ~T~~fle~n~yFGl~~~qV~~F~Q~~vP~l~~~dgki~l~~~~~l~~~P~GhGdIy~aL~~sGlLd~l~~~--G-ikyi~ 441 (811)
.+++-+.+.+. .+. +++++ |..--++|- -.+.|++ +.++ + =.-+.
T Consensus 67 ~v~~ql~~~~~---~~~------------------~ii~E-P~~rnTApa---ialaa~~-------~~~~~~~~~~~v~ 114 (478)
T PRK15460 67 IVAEQLRQLNK---LTE------------------NIILE-PAGRNTAPA---IALAALA-------AKRHSPESDPLML 114 (478)
T ss_pred HHHHHHHhcCC---ccc------------------cEEec-CCCCChHHH---HHHHHHH-------HHHhcCCCCCeEE
Confidence 45555554322 111 22322 111122221 0122221 1122 2 24677
Q ss_pred EEeCCCCcccccHhHHHHh--hhhhhc-CCceeEEEeeecCCCCcCceEEEEEecCCCc-cccceEEEEecccCcccCCC
Q 003559 442 VRQVSNVVAATDLTLLALA--GIGLHH-GKKLGFASCKRSSGATEGINVLIEKKNLDGK-WAYGLSCIEYTEFDKFGITR 517 (811)
Q Consensus 442 v~~vDN~La~vDP~~l~fl--G~~~~~-~~~~~~~~vvRK~~~~e~vGvL~~~r~~dGk-~~~~~~vVEYsEl~~~~~~~ 517 (811)
|...|......+ .|...+ +..... +.=+.+- ++-+.|+.+=|-+-.-...++. ......|....|=|+...++
T Consensus 115 vlPaDH~I~d~~-~F~~~i~~A~~~A~~~~lvt~G--I~Pt~PeTgyGYI~~g~~~~~~~~~~~~~V~~F~EKPd~~tA~ 191 (478)
T PRK15460 115 VLAADHVIADED-AFRAAVRNAMPYAEAGKLVTFG--IVPDLPETGYGYIRRGEVSAGEQDTVAFEVAQFVEKPNLETAQ 191 (478)
T ss_pred EeccccccCCHH-HHHHHHHHHHHHHhcCCEEEEe--cCCCCCCCCCCeEEeCCccccccccCceEeeEEEeCCCHHHHH
Confidence 888887765532 121111 122222 2212222 3334466677777320000000 00013455555555543222
Q ss_pred CCCCCCCcccccccceeeeeEeHHHHHhhhcc
Q 003559 518 GPFSSNGLQADFPANTNILYVDLASAELVGSS 549 (811)
Q Consensus 518 ~~~~dg~l~s~f~~Ninn~~fsL~~L~~vl~~ 549 (811)
.=..+|. |--|.-++.|+.+.+.+.+++
T Consensus 192 ~yl~~G~----y~WNsGiF~~~a~~~l~~~~~ 219 (478)
T PRK15460 192 AYVASGE----YYWNSGMFLFRAGRYLEELKK 219 (478)
T ss_pred HHHHcCC----EEEecceeheeHHHHHHHHHH
Confidence 1122331 445999999999999998876
No 94
>cd02518 GT2_SpsF SpsF is a glycosyltrnasferase implicated in the synthesis of the spore coat. Spore coat polysaccharide biosynthesis protein F (spsF) is a glycosyltransferase implicated in the synthesis of the spore coat in a variety of bacteria challenged by stress as starvation. The spsF gene is expressed in the late stage of coat development responsible for a terminal step in coat formation that involves the glycosylation of the coat. SpsF gene mutation resulted in spores that appeared normal. But, the spores tended to aggregate and had abnormal adsorption properties, indicating a surface alteration.
Probab=88.76 E-value=0.85 Score=47.35 Aligned_cols=60 Identities=27% Similarity=0.402 Sum_probs=41.2
Q ss_pred EEEecCCccccCCCCCCCCCceeeccccCCCCCcchHHHHHHHHHHHHHhHhhcCCcccceEEEecCCCCCc-hHHHHHH
Q 003559 291 EIYPLGGSADRLGLVDHETGECLPAAMLPYCGRTLLEGLIRDLQAREFLYFKLYGKQCITPVAIMTSSAKNN-HERITSL 369 (811)
Q Consensus 291 vVlLAGGlGTRLG~~~pKgg~~lpV~l~p~sgkTlLql~~e~I~~lq~La~~~~g~~~~IPl~IMTS~~~~T-h~~T~~f 369 (811)
.|+||||.++||| .|. ++++ .|+++++..++.+.... ..-.++|-|+. +- ++...++
T Consensus 2 aiIlA~G~S~R~~---~K~--ll~l-----~Gkpli~~~i~~l~~~~----------~~~~ivVv~~~--~~~~~~i~~~ 59 (233)
T cd02518 2 AIIQARMGSTRLP---GKV--LKPL-----GGKPLLEHLLDRLKRSK----------LIDEIVIATST--NEEDDPLEAL 59 (233)
T ss_pred EEEeeCCCCCCCC---CCc--cccc-----CCccHHHHHHHHHHhCC----------CCCeEEEECCC--CcccHHHHHH
Confidence 4789999999996 487 7765 78999999998876531 11245666665 22 2566666
Q ss_pred HHH
Q 003559 370 CER 372 (811)
Q Consensus 370 le~ 372 (811)
+..
T Consensus 60 ~~~ 62 (233)
T cd02518 60 AKK 62 (233)
T ss_pred HHH
Confidence 653
No 95
>COG0836 {ManC} Mannose-1-phosphate guanylyltransferase [Cell envelope biogenesis, outer membrane]
Probab=85.44 E-value=1.2 Score=49.71 Aligned_cols=201 Identities=13% Similarity=0.080 Sum_probs=104.8
Q ss_pred EEEEecCCccccCC----CCCCCCCceeeccccCCCCCcchHHHHHHHHHHHHHhHhhcCCcccceEEEecCCCCCchHH
Q 003559 290 GEIYPLGGSADRLG----LVDHETGECLPAAMLPYCGRTLLEGLIRDLQAREFLYFKLYGKQCITPVAIMTSSAKNNHER 365 (811)
Q Consensus 290 avVlLAGGlGTRLG----~~~pKgg~~lpV~l~p~sgkTlLql~~e~I~~lq~La~~~~g~~~~IPl~IMTS~~~~Th~~ 365 (811)
.-|+||||.||||= -..||- -+.+. +++|+||-.++|+..+. + .-.+++.|+. +-...
T Consensus 3 ~pvIlaGG~GsRLWPLSR~~~PKQ--Fl~L~----~~~Sllq~T~~R~~~l~-------~---~~~~~vVtne--~~~f~ 64 (333)
T COG0836 3 IPVILAGGSGSRLWPLSRKDYPKQ--FLKLF----GDLSLLQQTVKRLAFLG-------D---IEEPLVVTNE--KYRFI 64 (333)
T ss_pred eeEEEeCCCccccCCcCcccCCcc--ceeeC----CCCcHHHHHHHHHhhcC-------C---ccCeEEEeCH--HHHHH
Confidence 45789999999994 267887 77665 88999999999998864 1 3345666666 34444
Q ss_pred HHHHHHHhCCCCCCCCceEEEecCCeeeEecCCCcccccCCCCccccCCCCcHHHHHHHhcCchHHHHHcCceEEEEEeC
Q 003559 366 ITSLCERLRWFGRGQSSFQLFEQPLVPAVDAEDGQWLVMRPFAPVCKPGGHGAIWKLAHDKGIFKWFHDNGRKGATVRQV 445 (811)
Q Consensus 366 T~~fle~n~yFGl~~~qV~~F~Q~~vP~l~~~dgki~l~~~~~l~~~P~GhGdIy~aL~~sGlLd~l~~~Gikyi~v~~v 445 (811)
+++=|.+-+. ++ ..+ ++++--. =-++| .|.. +.+.-..+.|=--+.|...
T Consensus 65 v~eql~e~~~-----~~--------------~~~-illEP~g-RnTAp----AIA~-----aa~~~~~~~~d~~~lVlps 114 (333)
T COG0836 65 VKEQLPEIDI-----EN--------------AAG-IILEPEG-RNTAP----AIAL-----AALSATAEGGDALVLVLPS 114 (333)
T ss_pred HHHHHhhhhh-----cc--------------ccc-eEeccCC-CCcHH----HHHH-----HHHHHHHhCCCcEEEEecC
Confidence 4444444111 00 111 3332111 11222 1111 1122233344335677777
Q ss_pred CCCcccccHhHHHHhhh--h-hhcCCceeEEEeeecCCCCcCceEEEEE-ecCC-CccccceEEEEecccCcccCCCCCC
Q 003559 446 SNVVAATDLTLLALAGI--G-LHHGKKLGFASCKRSSGATEGINVLIEK-KNLD-GKWAYGLSCIEYTEFDKFGITRGPF 520 (811)
Q Consensus 446 DN~La~vDP~~l~flG~--~-~~~~~~~~~~~vvRK~~~~e~vGvL~~~-r~~d-Gk~~~~~~vVEYsEl~~~~~~~~~~ 520 (811)
|-.....+ .|...+.- - +.++.-+.+-.++- .|..|-|-+-.- ...+ |- +.|-++-|=|+...++.-.
T Consensus 115 DH~I~d~~-af~~av~~A~~~A~~g~lVTfGI~Pt--~PeTGYGYIe~G~~~~~~~~----~~V~~FvEKPd~etA~~yv 187 (333)
T COG0836 115 DHVIADEE-AFLNAVKKAEKAAEEGGIVTFGIPPT--RPETGYGYIETGESIAENGV----YKVDRFVEKPDLETAKKYV 187 (333)
T ss_pred cceeccHH-HHHHHHHHHHHHHHcCCEEEEecCCC--CCccCcceeecCcccccCCc----eEeeeeeeCCCHHHHHHHH
Confidence 76655432 22111111 1 12233333332232 245566666210 0001 22 5666777777764333333
Q ss_pred CCCCcccccccceeeeeEeHHHHHhhhcc
Q 003559 521 SSNGLQADFPANTNILYVDLASAELVGSS 549 (811)
Q Consensus 521 ~dg~l~s~f~~Ninn~~fsL~~L~~vl~~ 549 (811)
..|. |--|-....|+.+.+.+.+++
T Consensus 188 ~sG~----y~WNSGmF~Fra~~~l~e~~~ 212 (333)
T COG0836 188 ESGE----YLWNSGMFLFRASVFLEELKK 212 (333)
T ss_pred HcCc----eEeeccceEEEHHHHHHHHHh
Confidence 4442 555999999999999888875
No 96
>KOG1322 consensus GDP-mannose pyrophosphorylase/mannose-1-phosphate guanylyltransferase [Cell wall/membrane/envelope biogenesis]
Probab=84.04 E-value=29 Score=39.23 Aligned_cols=187 Identities=19% Similarity=0.219 Sum_probs=114.0
Q ss_pred CcEEEEEecCCccccCC---CCCCCCCceeeccccCCCCCcchHHHHHHHHHHHHHhHhhcCCcccceEEEecCCCCCch
Q 003559 287 PELGEIYPLGGSADRLG---LVDHETGECLPAAMLPYCGRTLLEGLIRDLQAREFLYFKLYGKQCITPVAIMTSSAKNNH 363 (811)
Q Consensus 287 ~kvavVlLAGGlGTRLG---~~~pKgg~~lpV~l~p~sgkTlLql~~e~I~~lq~La~~~~g~~~~IPl~IMTS~~~~Th 363 (811)
..++.|+|-||-||||= ++-||. +.|++ .+.+++++++.+.. .| .--+++.|++ +..
T Consensus 8 ~~vkaiILvGG~GTRLrPLT~t~pKP--lVpfg-----n~pmI~hqieal~n--------sG---i~~I~la~~y--~s~ 67 (371)
T KOG1322|consen 8 QSVKAIILVGGYGTRLRPLTLTRPKP--LVPFG-----NKPMILHQIEALIN--------SG---ITKIVLATQY--NSE 67 (371)
T ss_pred cceeEEEEecCCCceeeceeccCCCc--ccccC-----cchhhHHHHHHHHh--------CC---CcEEEEEEec--CcH
Confidence 36888999999999985 678887 77664 67777777766644 24 5578999998 333
Q ss_pred HHHHHHHHHhC-CCCCCCCceEEEecCCeeeEecCCCcccccCCCCccccCCCCcHHHHHHHhcCchHHHHHcCceEEEE
Q 003559 364 ERITSLCERLR-WFGRGQSSFQLFEQPLVPAVDAEDGQWLVMRPFAPVCKPGGHGAIWKLAHDKGIFKWFHDNGRKGATV 442 (811)
Q Consensus 364 ~~T~~fle~n~-yFGl~~~qV~~F~Q~~vP~l~~~dgki~l~~~~~l~~~P~GhGdIy~aL~~sGlLd~l~~~Gikyi~v 442 (811)
.--+.+.+.+. .|| ..| +|-|.+.|.=++ | --.|..+ .|....++ -.+|
T Consensus 68 sl~~~~~k~y~~~lg---Vei-~~s~eteplgta--G-------------------pl~laR~--~L~~~~~~---~ffV 117 (371)
T KOG1322|consen 68 SLNRHLSKAYGKELG---VEI-LASTETEPLGTA--G-------------------PLALARD--FLWVFEDA---PFFV 117 (371)
T ss_pred HHHHHHHHHhhhccc---eEE-EEEeccCCCccc--c-------------------hHHHHHH--HhhhcCCC---cEEE
Confidence 36667777663 455 233 455555554431 2 1111111 11111111 4556
Q ss_pred EeCCCCcccccHhHHHHhhhhhhcCCceeEEEeeecCCCCcCceEEEEEecC-CCccccceEEEEecccCcccCCCCCCC
Q 003559 443 RQVSNVVAATDLTLLALAGIGLHHGKKLGFASCKRSSGATEGINVLIEKKNL-DGKWAYGLSCIEYTEFDKFGITRGPFS 521 (811)
Q Consensus 443 ~~vDN~La~vDP~~l~flG~~~~~~~~~~~~~vvRK~~~~e~vGvL~~~r~~-dGk~~~~~~vVEYsEl~~~~~~~~~~~ 521 (811)
-+.| .++++| +..|+.++..++++....+ . +..+.-+-|++... . .| .+..++|=|++..+
T Consensus 118 LnsD-vi~~~p--~~~~vqfH~~~gae~TI~~-t-~vdepSkyGvv~~d--~~~g------rV~~F~EKPkd~vs----- 179 (371)
T KOG1322|consen 118 LNSD-VICRMP--YKEMVQFHRAHGAEITIVV-T-KVDEPSKYGVVVID--EDTG------RVIRFVEKPKDLVS----- 179 (371)
T ss_pred ecCC-eeecCC--HHHHHHHHHhcCCceEEEE-E-eccCccccceEEEe--cCCC------ceeEehhCchhhhh-----
Confidence 6655 455553 4467899999999988775 3 23334466777541 3 34 47888888775311
Q ss_pred CCCcccccccceeeeeEeHHHHHhhhc
Q 003559 522 SNGLQADFPANTNILYVDLASAELVGS 548 (811)
Q Consensus 522 dg~l~s~f~~Ninn~~fsL~~L~~vl~ 548 (811)
-.-|.....|+-+-|.+++.
T Consensus 180 -------nkinaGiYi~~~~vL~ri~~ 199 (371)
T KOG1322|consen 180 -------NKINAGIYILNPEVLDRILL 199 (371)
T ss_pred -------ccccceEEEECHHHHhHhhh
Confidence 11266778888888888764
No 97
>TIGR03584 PseF pseudaminic acid CMP-transferase. The sequences in this family include the pfam02348 (cytidyltransferase) domain and are homologous to the NeuA protein responsible for the transfer of CMP to neuraminic acid. According to, this gene is responsible for the transfer of CMP to the structurally related sugar, pseudaminic acid which is observed as a component of sugar modifications of flagellin in Campylobacter species. This gene is commonly observed in apparent operons with other genes responsible for the biosynthesis of pseudaminic acid and as a component of flagellar and exopolysaccharide biosynthesis loci.
Probab=79.37 E-value=77 Score=33.29 Aligned_cols=183 Identities=13% Similarity=0.159 Sum_probs=92.7
Q ss_pred EEEecCCccccCCCCCCCCCceeeccccCCCCCcchHHHHHHHHHHHHHhHhhcCCcccceEEEecCCCCCchHHHHHHH
Q 003559 291 EIYPLGGSADRLGLVDHETGECLPAAMLPYCGRTLLEGLIRDLQAREFLYFKLYGKQCITPVAIMTSSAKNNHERITSLC 370 (811)
Q Consensus 291 vVlLAGGlGTRLG~~~pKgg~~lpV~l~p~sgkTlLql~~e~I~~lq~La~~~~g~~~~IPl~IMTS~~~~Th~~T~~fl 370 (811)
.|++|.|.++||+ .|- +.++ .|++++++.++++++.. +.-.+++ .++ ++++.++.
T Consensus 2 aiIpArG~Skr~~---~Kn--l~~l-----~GkpLi~~ti~~a~~s~----------~~d~IvV-std----~~~i~~~a 56 (222)
T TIGR03584 2 AIIPARGGSKRIP---RKN--IKPF-----CGKPMIAYSIEAALNSG----------LFDKVVV-STD----DEEIAEVA 56 (222)
T ss_pred EEEccCCCCCCCC---Ccc--chhc-----CCcCHHHHHHHHHHhCC----------CCCEEEE-eCC----CHHHHHHH
Confidence 4778999999996 476 5554 79999999999876632 1112333 333 35677777
Q ss_pred HHhCCCCCCCCceEEEecCCeeeEecCCCcccccCCCCccccCCCCcHHHHHHHhcCchHHHHH-cCceEEEEEeCCCCc
Q 003559 371 ERLRWFGRGQSSFQLFEQPLVPAVDAEDGQWLVMRPFAPVCKPGGHGAIWKLAHDKGIFKWFHD-NGRKGATVRQVSNVV 449 (811)
Q Consensus 371 e~n~yFGl~~~qV~~F~Q~~vP~l~~~dgki~l~~~~~l~~~P~GhGdIy~aL~~sGlLd~l~~-~Gikyi~v~~vDN~L 449 (811)
+++ |. .| |... +..++..--|-+++.... ++.+.. ...+++.+.+.|.++
T Consensus 57 ~~~---g~---~v--------~~~r----------~~~l~~d~~~~~~si~~~-----l~~l~~~~~~d~v~~l~~tsPl 107 (222)
T TIGR03584 57 KSY---GA---SV--------PFLR----------PKELADDFTGTAPVVKHA-----IEELKLQKQYDHACCIYATAPF 107 (222)
T ss_pred HHc---CC---Ee--------EEeC----------hHHHcCCCCCchHHHHHH-----HHHHhhcCCCCEEEEecCCCCc
Confidence 653 32 11 1111 011111111222222221 233322 346899999999999
Q ss_pred ccccHhHHHHhhhhhhcCCceeEEEeeecCCCCcCceEEEEEecCCCccccceEEEEecccCcccCCCCCCCCCCccccc
Q 003559 450 AATDLTLLALAGIGLHHGKKLGFASCKRSSGATEGINVLIEKKNLDGKWAYGLSCIEYTEFDKFGITRGPFSSNGLQADF 529 (811)
Q Consensus 450 a~vDP~~l~flG~~~~~~~~~~~~~vvRK~~~~e~vGvL~~~r~~dGk~~~~~~vVEYsEl~~~~~~~~~~~dg~l~s~f 529 (811)
...+- +-.++......+++..+-++....++.-. ... ..+|+ +...-...... +..| +-..|
T Consensus 108 ~~~~~-I~~~i~~~~~~~~ds~~sv~~~~~~~~~~--~~~---~~~g~----~~~~~~~~~~~------~rQd--~~~~y 169 (222)
T TIGR03584 108 LQAKI-LKEAFELLKQPNAHFVFSVTSFAFPIQRA--FKL---KENGG----VEMFFPEHFNT------RSQD--LEEAY 169 (222)
T ss_pred CCHHH-HHHHHHHHHhCCCCEEEEeeccCCChHHh--eEE---CCCCc----EEecCCCcccC------CCCC--Cchhe
Confidence 98621 11223344445567666653221112111 111 14565 33322111110 1111 11124
Q ss_pred ccceeeeeEeHHHHHh
Q 003559 530 PANTNILYVDLASAEL 545 (811)
Q Consensus 530 ~~Ninn~~fsL~~L~~ 545 (811)
.-|-+..+++.+.+.+
T Consensus 170 ~~nga~y~~~~~~~~~ 185 (222)
T TIGR03584 170 HDAGQFYWGKSQAWLE 185 (222)
T ss_pred eeCCeEEEEEHHHHHh
Confidence 4599999999998865
No 98
>COG4750 LicC CTP:phosphocholine cytidylyltransferase involved in choline phosphorylation for cell surface LPS epitopes [Cell envelope biogenesis, outer membrane]
Probab=75.64 E-value=2 Score=44.86 Aligned_cols=60 Identities=20% Similarity=0.253 Sum_probs=42.9
Q ss_pred EEEecCCccccCC---CCCCCCCceeeccccCCCCCcchHHHHHHHHHHHHHhHhhcCCcccceEEEecCCCCCchHHHH
Q 003559 291 EIYPLGGSADRLG---LVDHETGECLPAAMLPYCGRTLLEGLIRDLQAREFLYFKLYGKQCITPVAIMTSSAKNNHERIT 367 (811)
Q Consensus 291 vVlLAGGlGTRLG---~~~pKgg~~lpV~l~p~sgkTlLql~~e~I~~lq~La~~~~g~~~~IPl~IMTS~~~~Th~~T~ 367 (811)
.|+||-|+|||+- ++-||+ ++.| .|+.+.+.++++++.. | .--+.|.|.- - .+--
T Consensus 3 AIIlAAG~gsR~~plT~~tpK~--LlkV-----~g~plIErqI~~L~e~--------g---I~dI~IVvGY---l-kE~F 60 (231)
T COG4750 3 AIILAAGLGSRFVPLTQSTPKS--LLKV-----NGEPLIERQIEQLREA--------G---IDDITIVVGY---L-KEQF 60 (231)
T ss_pred eEEEecccccccccccccCChH--HHHh-----cCcccHHHHHHHHHHC--------C---CceEEEEeee---h-HHHH
Confidence 4789999999975 688999 8877 6888999888887653 2 3345667765 2 3344
Q ss_pred HHHHH
Q 003559 368 SLCER 372 (811)
Q Consensus 368 ~fle~ 372 (811)
+||++
T Consensus 61 eYLkd 65 (231)
T COG4750 61 EYLKD 65 (231)
T ss_pred HHHHH
Confidence 55654
No 99
>COG1210 GalU UDP-glucose pyrophosphorylase [Cell envelope biogenesis, outer membrane]
Probab=73.50 E-value=4.8 Score=44.17 Aligned_cols=62 Identities=24% Similarity=0.472 Sum_probs=40.1
Q ss_pred EEEecCCccccCCCCCCCCCceeeccccCCCCCcchHHHHHHHHHHHHHhHhhcCCcccceEEEecCCCCCchHHHHHHH
Q 003559 291 EIYPLGGSADRLGLVDHETGECLPAAMLPYCGRTLLEGLIRDLQAREFLYFKLYGKQCITPVAIMTSSAKNNHERITSLC 370 (811)
Q Consensus 291 vVlLAGGlGTRLG~~~pKgg~~lpV~l~p~sgkTlLql~~e~I~~lq~La~~~~g~~~~IPl~IMTS~~~~Th~~T~~fl 370 (811)
.|+.|.|+|||+ +..-| .+|=+|.|+-+|...|+.++...+. | .--++|.|+. +...+.++|
T Consensus 7 AViPaAGlGTRf-LPATK---aiPKEMLPIvdKP~IqYiVeEa~~a--------G---Ie~i~iVTgr---~K~~IeDhF 68 (291)
T COG1210 7 AVIPAAGLGTRF-LPATK---AIPKEMLPIVDKPLIQYIVEEAVAA--------G---IEEILIVTGR---GKRAIEDHF 68 (291)
T ss_pred EEEEccCccccc-ccccc---cCchhhccccCchhHHHHHHHHHHc--------C---CCEEEEEecC---CcchHHHhC
Confidence 467889999999 43323 2333344446799999999877553 4 4467888887 333444444
No 100
>COG2068 Uncharacterized MobA-related protein [General function prediction only]
Probab=72.91 E-value=4.2 Score=42.61 Aligned_cols=39 Identities=15% Similarity=0.304 Sum_probs=33.8
Q ss_pred cEEEEEecCCccccCCCCCCCCCceeeccccCCCCCcchHHHHHHHHH
Q 003559 288 ELGEIYPLGGSADRLGLVDHETGECLPAAMLPYCGRTLLEGLIRDLQA 335 (811)
Q Consensus 288 kvavVlLAGGlGTRLG~~~pKgg~~lpV~l~p~sgkTlLql~~e~I~~ 335 (811)
+++.|+||-|.|+||| .+|- ++|+ .|+++....+++.+.
T Consensus 5 ~v~~VvLAAGrssRmG--~~Kl--Lap~-----~g~plv~~~~~~a~~ 43 (199)
T COG2068 5 TVAAVVLAAGRSSRMG--QPKL--LAPL-----DGKPLVRASAETALS 43 (199)
T ss_pred ceEEEEEcccccccCC--Ccce--eccc-----CCCcHHHHHHHHHHh
Confidence 6899999999999999 7887 7665 899999999988765
No 101
>PF14134 DUF4301: Domain of unknown function (DUF4301)
Probab=44.20 E-value=22 Score=42.09 Aligned_cols=60 Identities=27% Similarity=0.328 Sum_probs=46.2
Q ss_pred ceEEEecCC---eeeEecCCCcccccCCCCccccCCCCcHHHHHHHhcCchHHHHHcCceEEEEEeCCCCccc
Q 003559 382 SFQLFEQPL---VPAVDAEDGQWLVMRPFAPVCKPGGHGAIWKLAHDKGIFKWFHDNGRKGATVRQVSNVVAA 451 (811)
Q Consensus 382 qV~~F~Q~~---vP~l~~~dgki~l~~~~~l~~~P~GhGdIy~aL~~sGlLd~l~~~Gikyi~v~~vDN~La~ 451 (811)
+|.|=.|.. --+++ .|+.+..++.+++..-|.|||.+. +-|.+-.-.-|||=|+||+...
T Consensus 235 ~IsfS~Qk~sTDTIAv~-~dN~pFR~~dG~LlFRPgGHGALi---------eNLN~ldaDiIFIKNIDNVvpd 297 (513)
T PF14134_consen 235 EISFSEQKPSTDTIAVD-PDNTPFRNEDGSLLFRPGGHGALI---------ENLNDLDADIIFIKNIDNVVPD 297 (513)
T ss_pred EEEecccCCCCCeeEEC-CCCCccCCCCCCEEeCCCcchHHH---------hhhccccCCEEEEeCccccCCc
Confidence 455655653 45666 678888899999999999999864 4455566788999999999853
No 102
>PF10162 G8: G8 domain; InterPro: IPR019316 This entry represents a domain found in disease proteins PKHD1 and KIAA1199 and is named G8 after its 8 conserved glycines. It is predicted to contain 10 beta strands and an alpha helix [].
Probab=35.21 E-value=1.7e+02 Score=28.12 Aligned_cols=68 Identities=15% Similarity=0.247 Sum_probs=45.6
Q ss_pred CCCCCcEEEEEeceEEeeceEEEEEEEEEeccCCCCccccCCCcceeecccccceEEEeeeEEeeCceeeecCCC--cee
Q 003559 702 SVSKGSELQIEVAEFLWRNVQLDGSLIIVAENVMGSTRIADNGESILQYGYRCGRCKLNNVKVLNKGIDWDCGDN--TYW 779 (811)
Q Consensus 702 si~~~S~L~VeG~~~f~~~v~ldGslvI~a~~~~g~~~~~~~g~~i~~~~~~~g~~~l~~~~V~N~G~~~~~~~~--~~~ 779 (811)
.|.++.++.++.+......+.+.|.|++..+. +. .+..+.+.|.+.| .+...+. -|
T Consensus 16 ~I~~g~~v~lD~~~~~l~~l~I~G~L~f~~~~--~~------------------~L~a~~I~V~~Gg-~l~iGs~~~P~- 73 (125)
T PF10162_consen 16 VIPAGQTVLLDVSTPKLGSLIIGGTLIFDDDR--DI------------------TLRAEYILVEGGG-RLIIGSEDCPF- 73 (125)
T ss_pred EECCCCEEEEcCCChheeEEEEEEEEEEccCC--CC------------------EEEEEEEEECCCC-eEEecCCCCCc-
Confidence 37888889999887888888889999986531 11 4566666777766 5554433 24
Q ss_pred cceeeEEEEEEEEeecCc
Q 003559 780 KHDVQWFEALKVILHGNA 797 (811)
Q Consensus 780 ~~~v~r~e~~~i~~~~~~ 797 (811)
.-...|.|+|+.
T Consensus 74 ------~~~~~I~L~G~~ 85 (125)
T PF10162_consen 74 ------QGKATITLYGRR 85 (125)
T ss_pred ------CceEEEEEEcCC
Confidence 334566676653
No 103
>COG1861 SpsF Spore coat polysaccharide biosynthesis protein F, CMP-KDO synthetase homolog [Cell envelope biogenesis, outer membrane]
Probab=33.41 E-value=62 Score=34.88 Aligned_cols=67 Identities=15% Similarity=0.278 Sum_probs=48.1
Q ss_pred cEEEEEecCCccccCCCCCCCCCceeeccccCCCCCcchHHHHHHHHHHHHHhHhhcCCcccceEEEecCCCCCchHHHH
Q 003559 288 ELGEIYPLGGSADRLGLVDHETGECLPAAMLPYCGRTLLEGLIRDLQAREFLYFKLYGKQCITPVAIMTSSAKNNHERIT 367 (811)
Q Consensus 288 kvavVlLAGGlGTRLG~~~pKgg~~lpV~l~p~sgkTlLql~~e~I~~lq~La~~~~g~~~~IPl~IMTS~~~~Th~~T~ 367 (811)
++++|+=| |||++.=+|-.++|+ -+.+++++++++++.... .=-++|-||+. .+++...
T Consensus 3 ~I~~IiQA-----RmgStRLpgKvLlpL-----~~~pmI~~~lervrks~~----------~d~ivvATS~~-~~d~~l~ 61 (241)
T COG1861 3 MILVIIQA-----RMGSTRLPGKVLLPL-----GGEPMIEYQLERVRKSKD----------LDKIVVATSDK-EEDDALE 61 (241)
T ss_pred cEEEEeee-----cccCccCCcchhhhc-----CCCchHHHHHHHHhcccc----------ccceEEEecCC-cchhHHH
Confidence 34555543 777776555336665 578899999999887642 23579999994 7888889
Q ss_pred HHHHHhCC
Q 003559 368 SLCERLRW 375 (811)
Q Consensus 368 ~fle~n~y 375 (811)
.++.++.+
T Consensus 62 ~~~~~~G~ 69 (241)
T COG1861 62 EVCRSHGF 69 (241)
T ss_pred HHHHHcCe
Confidence 99998875
No 104
>smart00613 PAW domain present in PNGases and other hypothetical proteins. present in several copies in proteins with unknown function in C. elegans
Probab=23.99 E-value=2e+02 Score=26.64 Aligned_cols=52 Identities=21% Similarity=0.463 Sum_probs=35.5
Q ss_pred cCCCcceeecccccceEEEeee-EEee--CceeeecC------CC-ceecceee----EEEEEEEEeecCcee
Q 003559 741 ADNGESILQYGYRCGRCKLNNV-KVLN--KGIDWDCG------DN-TYWKHDVQ----WFEALKVILHGNAEF 799 (811)
Q Consensus 741 ~~~g~~i~~~~~~~g~~~l~~~-~V~N--~G~~~~~~------~~-~~~~~~v~----r~e~~~i~~~~~~ef 799 (811)
.+||.++.. ..++|+ +|.. ..|.+..+ +. ++|+|++. +-|..+|++.|.-++
T Consensus 22 ~~dGs~v~~-------~~~~nIeR~vd~~~~~~~~~~~~~e~~~~~I~WkFdl~~~g~~V~ki~Ir~~g~~~~ 87 (89)
T smart00613 22 NEDGSPVQP-------YEVKNIERVVDKELNEVYLHKKRPEEEGNYIYWKFDLKSTGKSVEKVVIRMSGIEEI 87 (89)
T ss_pred CCCCceeee-------EEEeeEEEEEeccCCeEEEEEecCCCCCceEEEEEEccCCCcEEEEEEEEEceEEEe
Confidence 346666633 357888 7777 56665554 23 79999987 578889998886543
No 105
>PLN03014 carbonic anhydrase
Probab=21.70 E-value=1.2e+02 Score=34.61 Aligned_cols=14 Identities=36% Similarity=0.515 Sum_probs=9.7
Q ss_pred HHHHHHHHHHHHHH
Q 003559 80 FHQEISRLKKLRSR 93 (811)
Q Consensus 80 ~~~~~~~l~~~~~~ 93 (811)
++..|++|+.|++.
T Consensus 83 ~~~~~~~~~~~~~~ 96 (347)
T PLN03014 83 YDEAIEALKKLLIE 96 (347)
T ss_pred HHHHHHHHHhhccc
Confidence 66777777777643
No 106
>KOG1460 consensus GDP-mannose pyrophosphorylase [Carbohydrate transport and metabolism; Cell wall/membrane/envelope biogenesis; Posttranslational modification, protein turnover, chaperones]
Probab=20.67 E-value=8.7e+02 Score=27.74 Aligned_cols=165 Identities=13% Similarity=0.090 Sum_probs=94.8
Q ss_pred EEEEEecCC-ccccC---CCCCCCCCceeeccccCCCCCcchHHHHHHHHHHHHHhHhhcCCcccceEEEecCCCCCchH
Q 003559 289 LGEIYPLGG-SADRL---GLVDHETGECLPAAMLPYCGRTLLEGLIRDLQAREFLYFKLYGKQCITPVAIMTSSAKNNHE 364 (811)
Q Consensus 289 vavVlLAGG-lGTRL---G~~~pKgg~~lpV~l~p~sgkTlLql~~e~I~~lq~La~~~~g~~~~IPl~IMTS~~~~Th~ 364 (811)
.|||++-|= -|||. -++-||- ++|+ -|....+..+....++..|+ =+++.-| .-.+
T Consensus 4 ~AVIlVGGP~kGTRFRPLSf~vPKP--Lfpi-----aG~pmI~Hhi~ac~qi~~l~-----------eI~LvGF--y~e~ 63 (407)
T KOG1460|consen 4 KAVILVGGPQKGTRFRPLSFNVPKP--LFPI-----AGVPMIHHHISACKQISGLA-----------EILLVGF--YEER 63 (407)
T ss_pred EEEEEecCCCCCccccccccCCCCC--cccc-----CCcchhhhhHHHHhcccchh-----------heeEEec--ccch
Confidence 455655443 39994 5899999 9988 47778887777666654332 1233344 2455
Q ss_pred HHHHHHHHhC-CCCCCCCceEEEecCCeeeEecCCCcccccCCCCccccCCCCcHHHHHHHhcCchHHHHHcCceEEEEE
Q 003559 365 RITSLCERLR-WFGRGQSSFQLFEQPLVPAVDAEDGQWLVMRPFAPVCKPGGHGAIWKLAHDKGIFKWFHDNGRKGATVR 443 (811)
Q Consensus 365 ~T~~fle~n~-yFGl~~~qV~~F~Q~~vP~l~~~dgki~l~~~~~l~~~P~GhGdIy~aL~~sGlLd~l~~~Gikyi~v~ 443 (811)
.-..|+.+-. .|- +|. ++--+.+|.|-||-...+. |+.++---..+||.
T Consensus 64 ~f~~fis~~~~e~~-------------~pv------------rYL~E~~plGtaGgLyhFr-----dqIl~g~ps~vFvl 113 (407)
T KOG1460|consen 64 VFTDFISAIQQEFK-------------VPV------------RYLREDNPLGTAGGLYHFR-----DQILAGSPSAVFVL 113 (407)
T ss_pred HHHHHHHHHHhhcc-------------cch------------hhhccCCCCCcccceeehh-----hHHhcCCCceEEEE
Confidence 5566666532 221 121 1223467888765433332 45556667899999
Q ss_pred eCCCCcccccHhHHHHhhhhhhcCCceeEEEeeecCCCCcCceEEEEEecCCCccccceEEEEecccCcc
Q 003559 444 QVSNVVAATDLTLLALAGIGLHHGKKLGFASCKRSSGATEGINVLIEKKNLDGKWAYGLSCIEYTEFDKF 513 (811)
Q Consensus 444 ~vDN~La~vDP~~l~flG~~~~~~~~~~~~~vvRK~~~~e~vGvL~~~r~~dGk~~~~~~vVEYsEl~~~ 513 (811)
|.|=...+.=+ .++..+...+.-+.+.+..-.+..+..-|.|+.. -..| .|+-|.|=|.-
T Consensus 114 naDVCcsfPl~---~ml~ahr~~g~~~tll~tkvs~e~asnfG~lV~d-P~t~------evlHYveKPsT 173 (407)
T KOG1460|consen 114 NADVCCSFPLQ---DMLEAHRRYGGIGTLLVTKVSREQASNFGCLVED-PSTG------EVLHYVEKPST 173 (407)
T ss_pred ecceecCCcHH---HHHHHHhhcCCceEEEEEEecHhHhhccCeeeec-CCcC------ceEEeecCcch
Confidence 99987777522 2355666667666666521111123346677651 1233 37778776554
Done!