Query 003559
Match_columns 811
No_of_seqs 262 out of 675
Neff 5.1
Searched_HMMs 29240
Date Tue Mar 26 17:28:28 2013
Command hhsearch -i /local_scratch/syshi/lefta3m/003559.a3m -d /local_scratch/syshi/pdb70.hhm -v 0 -o /local_scratch/syshi/H1_1610-1613//hhsearch_pdb/003559hhsearch_pdb
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3ogz_A UDP-sugar pyrophosphory 1.0 1 1 932.5 40.9 559 134-803 7-620 (630)
2 2yqc_A UDP-N-acetylglucosamine 1.0 1 1 694.8 31.8 444 135-686 5-470 (486)
3 3r3i_A UTP--glucose-1-phosphat 1.0 1 1 683.9 28.5 444 148-745 53-512 (528)
4 3gue_A UTP-glucose-1-phosphate 1.0 1 1 669.8 29.8 390 281-745 69-474 (484)
5 1jv1_A Glcnac1P uridyltransfer 1.0 1 1 658.8 35.6 430 134-663 1-440 (505)
6 2oeg_A UTP-glucose-1-phosphate 1.0 1 1 650.4 16.3 414 280-780 67-497 (505)
7 3oc9_A UDP-N-acetylglucosamine 1.0 1 1 622.6 31.3 353 277-678 22-382 (405)
8 2i5k_A UTP--glucose-1-phosphat 1.0 1 1 584.5 26.0 455 162-745 11-472 (488)
9 2icy_A Probable UTP-glucose-1- 1.0 1 1 566.0 24.4 399 261-745 51-456 (469)
10 3st8_A Bifunctional protein GL 1.0 1 1 72.1 14.0 192 287-549 11-204 (501)
No 1
>3ogz_A UDP-sugar pyrophosphorylase; LEFT handed beta helix, rossmann fold, UDP sugar pyrophospho transferase; 2.03A {Leishmania major} PDB: 3oh3_A* 3oh1_A* 3oh0_A* 3oh2_A* 3oh4_A*
Probab=1.00 E-value=1 Score=932.47 Aligned_cols=559 Identities=20% Similarity=0.172 Sum_probs=480.9
Q ss_pred CCHHHHHHHHHH--CCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHH
Q ss_conf 058999999998--487321354763001223344699988878765301446788632000014440999999999999
Q 003559 134 LDQLFLIKCVIA--AGQEHVLNLEPEYVESEARSDIKSALYALVEFIDRLDVNGRNSEAKDAVLEIEQVKDLNKLLKTLA 211 (811)
Q Consensus 134 ~~~~~l~~~L~~--~gQ~Hll~~~~~w~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~~~~~~k~~Ll~qL~ 211 (811)
++...|+++|.+ +||+|||++|++ . |+| ++++|++|++||.
T Consensus 7 ~~~~~L~~~l~~~~~gQ~HLf~~w~~---~---------------------------------l~~-~~~e~~~L~~qL~ 49 (630)
T 3ogz_A 7 SNLQALREELCTPGLDQGHLFEGWPE---T---------------------------------VDE-CNERQIALLTDLY 49 (630)
T ss_dssp HHHHHHHHHHTSTTTCCGGGGTTCCS---S---------------------------------GGG-CCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHCCCCCHHHHHHCCC---C---------------------------------CCC-CHHHHHHHHHHHH
T ss_conf 66999999853145895566510002---2---------------------------------687-9899999999998
Q ss_pred HHHCCCCCCCHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCC-C---CCCCCCCCCHHHHHHHHHHHHHCCC
Q ss_conf 87311358660677999999999703111235655342221224453335-9---9976568781899999997651049
Q 003559 212 EIEQFYDCVGGIIGYQVEVLELLAQSKFERKTTKSQHVHESMECQFLEIH-V---PSGLDLSQNTEYAAQAALWGIEGLP 287 (811)
Q Consensus 212 ~ld~~y~~~gGl~~Y~~~a~~ll~~s~~~~~~~~~~~~~~~~~~~~~~~~-v---P~g~~l~~~~~~~~~~e~~Gle~l~ 287 (811)
.+|..| +|||.+|+.++++++. +.. +. ++++.+. + |.+..++.+++...+|+++|+++|+
T Consensus 50 ~~d~~~--~~gl~~~~~~a~~~l~-~~~--~~-----------~~~~~~~p~P~~~~~~~l~~~~~~~~~~~~~Gl~~i~ 113 (630)
T 3ogz_A 50 MFSNMY--PGGVAQYIRNGHELLA-RES--EE-----------VDFAALEMPPLIFEAPSLHRRTAERTALENAGTAMLC 113 (630)
T ss_dssp HGGGTS--TTHHHHHHHHHHHHHH-HHT--SC-----------CCCSEEECCSCEEECCCTTCCCHHHHHHHHHHHHHGG
T ss_pred HHCHHH--HHHHHHHHHHHHHHHH-CCC--CC-----------CCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHH
T ss_conf 638020--3469999999999862-514--58-----------8523353189987543355797999999998699773
Q ss_pred CEEEEEECCCCCCCCCCCCCCCCCEEECCCCCCCCCCCHHHHHHHHHHHHHHHHHHCCCCCCCEEEEECCCCCCCHHHHH
Q ss_conf 48899915896566899999988134265468999852499999999999886763199221129996599998469999
Q 003559 288 ELGEIYPLGGSADRLGLVDHETGECLPAAMLPYCGRTLLEGLIRDLQAREFLYFKLYGKQCITPVAIMTSSAKNNHERIT 367 (811)
Q Consensus 288 kvavIlLAGGlGTRLG~~~pKgg~~lpv~l~~~sgkTlLql~ie~I~~lq~la~k~~G~~~~IPl~IMTS~~~~Th~~T~ 367 (811)
|+|||+||||||||||+++||+ +||++++ +++||||+++++|++ ++| +.||||||||+ +||++|+
T Consensus 114 kvavvllaGGlGTRLG~~~pK~--~lpv~~~--s~ks~lql~~e~i~~-------~~g--~~iPl~IMTS~--~T~~~T~ 178 (630)
T 3ogz_A 114 KTVFVLVAGGLGERLGYSSIKV--SLPVETA--TNTTYLAYYLRWAQR-------VGG--KEVPFVIMTSD--DTHDRTL 178 (630)
T ss_dssp GEEEEEECCCEEGGGTEEEEGG--GSBSCTT--TCCBHHHHHHHHHHH-------HHC--TTCCEEEEECT--TTHHHHH
T ss_pred HCEEEEECCCCCCCCCCCCCCC--CCEECCC--CCCCHHHHHHHHHHH-------HHC--CCCCEEEEECC--CCHHHHH
T ss_conf 0269996488642147877743--4200478--998499999999999-------869--99868999564--5169999
Q ss_pred HHHHHHCCCCCCCCCEEEEECCCEEEEECCCCCCCCCCCCCCCCCCCCCCHHHHHHHHCC------------------CH
Q ss_conf 999980799889985399854971047269980302279975214799817879998349------------------03
Q 003559 368 SLCERLRWFGRGQSSFQLFEQPLVPAVDAEDGQWLVMRPFAPVCKPGGHGAIWKLAHDKG------------------IF 429 (811)
Q Consensus 368 ~~le~n~yFGl~~~qV~~F~Q~~vP~l~~~dgkl~l~~~~~i~~~P~GHGdIy~aL~~sG------------------iL 429 (811)
+||++ ||++++||++|+|+++||+++++|+++++++++++|+|+||||||.+|+++| +|
T Consensus 179 ~~~~~---fgl~~~~V~~F~Q~~~P~i~~~~g~l~l~~~~~i~~~P~GhGdv~~aL~~sG~~~~~~~~~~~~~~~~~~lL 255 (630)
T 3ogz_A 179 QLLRE---LQLEVPNLHVLKQGQVFCFADSAAHLALDETGKLLRKPHGHGDVHSLIYNATVKRDVVPDSGDGTATAQPLV 255 (630)
T ss_dssp HHHHH---TTCCCTTEEEEECCCEECBSSTTCCBCBCTTSSBCEECCCTTHHHHHHHHCBC--------------CCBHH
T ss_pred HHHHH---HCCCCCCEEEEECCCEEEEECCCCCEEECCCCCCCCCCCCCHHHHHHHHHCCCCCCCCCCCCCCCCCHHHHH
T ss_conf 99998---499833379998177877855888660068995057889987999999971997545544333331077899
Q ss_pred HHHHHCCCEEEEEEECCCCCCCC-CHHHHHHHHHHHHCCCCEEEEEEEECCCCCCCCEEEEEEECCCCCCCCCEEEEEEC
Q ss_conf 79997694399999279874334-47589986534413995257896203798767238998742799501662899803
Q 003559 430 KWFHDNGRKGATVRQVSNVVAAT-DLTLLALAGIGLHHGKKLGFASCKRSSGATEGINVLIEKKNLDGKWAYGLSCIEYT 508 (811)
Q Consensus 430 d~l~~~Gikyi~v~qvDN~La~v-DP~il~~lG~~~~~~~~~~~~~v~RK~~~~e~vGvL~~~~~~dGk~~~~~~vVEYs 508 (811)
++|+++|++|+||+||||+|+++ ||.| +|+++.++++|++++|+| .++|++|++|+.++.||++ ++++||||+
T Consensus 256 d~l~~~Gieyi~v~~vDN~L~~~~DP~~---lG~~~~~~~d~~~kvv~r--~p~E~vG~l~~~~~~dGk~-~~v~vVEYs 329 (630)
T 3ogz_A 256 NDWLAAGYESIVFIQDTNAGATITIPIS---LALSAEHSLDMNFTCIPR--VPKEPIGLLCRTKKNSGDP-WLVANVEYN 329 (630)
T ss_dssp HHHHHTTCCEEEEECTTBTTHHHHHHHH---HHHHHHTTCSEEEEEECC--CSSCSSCEEEEEESSTTSC-CEEEEECHH
T ss_pred HHHHHCCCEEEEEECCCCCCCCCCCHHH---HHHHHHCCCCEEEEEEEC--CCCCCEEEEEEEECCCCCE-EEEEEEEEC
T ss_conf 9999759889999906876322239998---579986699779999888--8776532699996489936-115689840
Q ss_pred CCCCCCC----CCCC-CCCCCCCCCCCCCEEEEEEEHHHHHHHHCCCCCCCCCCCCCCCCCCCCEECCCCCCCCCCCCCC
Q ss_conf 5586567----7898-9999855556551335567388899650235668855400024898510069999534585200
Q 003559 509 EFDKFGI----TRGP-FSSNGLQADFPANTNILYVDLASAELVGSSENERSLPGMVLNTKKPIVYMDNFGDTHSVPGGRL 583 (811)
Q Consensus 509 El~~~~~----~~~~-~~dg~l~s~f~~Ninnl~~~L~~l~~vl~~~~~~~Lp~hianpKKkIpy~D~~g~~~~~~p~rL 583 (811)
|++++.. ++++ +.+.+.++.|+||||||||+|++|.+.+.. ..+.+|.+| ||| |+|..+ +.+++++||
T Consensus 330 ei~~~~~~~~~~~g~~~~~~~~~~~f~GNtNnl~~~L~a~~~~l~~-~~~~ip~~v-NpK----~~d~~~-~~~~~~~qL 402 (630)
T 3ogz_A 330 VFAEVSRALNKDGGDEVSDPTGFSPFPGSVNTLVFKLSSYVDRLRE-SHGIVPEFI-NPK----YSDETR-RSFKKPARI 402 (630)
T ss_dssp HHHHHHHHC------------CCCSSCEEEEEEEEEHHHHHHHHHH-HTTCCCCEE-CCC----BSSSSS-CCBSSCBCE
T ss_pred CCCHHHHHCCCCCCCCCCCCCCCCCCCCCCEEEEEEHHHHHHHHHH-CCCCCCEEC-CCC----CCCCCC-CCCCCCHHH
T ss_conf 0797675044877654445555555655213356779999999986-048663341-776----317766-645761235
Q ss_pred CCCHHHHHHHHCCCCCCCCCCCEEEECCCCEEEEECCCCCCHHHHHCCCCCCCCCCCHHHHHHHHHHHHHHHHHHCCCCC
Q ss_conf 10002456310022445655420343264113310258885366530123778999935469999999999998779514
Q 003559 584 ECTMQNIADNFLNTYSSRCYKGVEDDLDTFMVYNERRRVTSSAKKKRKRADMSLHQTPDGSFLDILRNAYDILCQCHIKL 663 (811)
Q Consensus 584 E~~Mqdi~~~F~~~y~~~~~~~~f~~~~r~~~FsPvKn~~~sa~k~~~~~~~~~~~sp~ta~~dl~~~~~~~L~~aG~~v 663 (811)
||||||++++|+. ...++++++++| .+|+||||+..+|+++...+ .+++||+|++.|+|+++++||+.||+++
T Consensus 403 Et~m~d~~~~F~~----~~~~v~~~~V~R-~~F~PVKn~~~~a~~k~~~g--~~~~sp~t~~~dly~~~~~~L~~aG~~v 475 (630)
T 3ogz_A 403 ESLMQDIALLFSE----DDYRVGGTVFER-FSYQPVKNSLEEAAGLVAQG--NGAYCAATGEAAFYELQRRRLKAIGLPL 475 (630)
T ss_dssp ECCGGGGGGGCCT----TTCCEEEEECCG-GGCCBCCBCHHHHHHHHHTT--CCCCBHHHHHHHHHHHHHHHHHHTTCCC
T ss_pred HHHHHHHHHHCCC----CCCCEEEEEECC-CEEECCCCCHHHHHHHHCCC--CCCCCHHHHHHHHHHHHHHHHHHCCCEE
T ss_conf 6687789875355----676156899777-74555657756766641169--9767868999999999999999869520
Q ss_pred CC---CC---CCCC-CCCCCCCEEEEECCCCCCC--HHHHHHCCCC--C-CCCCCCEEEEEECEEEEECEEEEEEEEEEE
Q ss_conf 76---55---7873-3236998069857875411--9988300599--9-778986799995639962649998899981
Q 003559 664 PE---IE---GNDK-YIDDGPPYLILLHPALGLL--WEVTRQKFKG--G-SVSKGSELQIEVAEFLWRNVQLDGSLIIVA 731 (811)
Q Consensus 664 p~---~~---~~~~-~~~~gP~~~I~L~P~~~~~--~~~~~~k~~~--g-sis~~S~L~VeG~~~~~~~v~LdGslvI~a 731 (811)
+. ++ +++. +++.||. |+|+|+|+++ |+++++||++ + +|+++|+|+|+|+ ++|+||+|||+|+|.|
T Consensus 476 ~~~~~~~~~~~~~~~~~~~~P~--i~l~p~~~~~~~~~~~~~k~~~~~~~~i~~~S~L~veg~-v~~~~l~LdG~lvI~a 552 (630)
T 3ogz_A 476 FYSSQPEVTVAKDAFGVRLFPI--IVLDTVCASSGSLDDLARVFPTPEKVHIDQHSTLIVEGR-VIIESLELYGALTIRG 552 (630)
T ss_dssp CCCCSCSEEETTTTEEECCCSE--EEECHHHHTTCCHHHHHHHCSSGGGEEECTTCEEEEESS-EEESCEEEESEEEEEC
T ss_pred CCCCCCHHHHHCCCCCCCCCCE--EEEECCCCCCCCHHHHHHHHCCCCCCEECCCCEEEEEEE-EEEEEEEEEEEEEEEC
T ss_conf 2556620333248543477987--998151155545999999717888854648867999988-9997789966799974
Q ss_pred CCCCCCCCCCCCCCCEEECCCCCCEEEEEEEEEEECCEEEECC----CC---------CEECCEEEEEEEEEEEEECCCE
Q ss_conf 2689982004898521111630114899314786086664318----98---------3003325497789999604843
Q 003559 732 ENVMGSTRIADNGESILQYGYRCGRCKLNNVKVLNKGIDWDCG----DN---------TYWKHDVQWFEALKVILHGNAE 798 (811)
Q Consensus 732 ~~~~g~~~~~~~g~~i~~~~~~~g~~~l~~~~V~N~G~~~~~~----~~---------~~~~~~v~r~e~~~i~~~~~~e 798 (811)
++ |+.. .+ .+++++ +|+|+||.|.++ +. .||||+++|+|++++.+..+||
T Consensus 553 ~~--~~~~-----~~---------~v~~~~-~v~n~g~~~~~~~~~~~~~~~~~~~~~~irg~~~~~~e~~~~~~~~~~~ 615 (630)
T 3ogz_A 553 PT--DSMA-----LP---------HVVRNA-VVRNAGWSVHAILSLCAGRDSRLSEVDRIRGFVLKKTAMAVMDCNTKGE 615 (630)
T ss_dssp CS--STTS-----CC---------EEECSE-EEECCCCEEEECCTTC----CCCCHHHHTTTEEEECCCCEEECC-----
T ss_pred CC--CCCC-----CC---------EEEECC-EEECCCCEEEECCCCCCCCCCCCCHHHCCCCEEEEEEEEEEEEECCCCC
T ss_conf 78--9755-----75---------588613-4856994799702456555578886541255367732479999658886
Q ss_pred EEECC
Q ss_conf 68602
Q 003559 799 FEASD 803 (811)
Q Consensus 799 f~a~~ 803 (811)
++|.-
T Consensus 616 ~~~~~ 620 (630)
T 3ogz_A 616 SEAGA 620 (630)
T ss_dssp -----
T ss_pred CCCCC
T ss_conf 33578
No 2
>2yqc_A UDP-N-acetylglucosamine pyrophosphorylase; uridine-diphospho-N- acetylglucosamine, N-acetylglucosamine-1-phosphate, transferase; 1.90A {Candida albicans} PDB: 2yqh_A* 2yqj_A* 2yqs_A*
Probab=1.00 E-value=1 Score=694.81 Aligned_cols=444 Identities=18% Similarity=0.208 Sum_probs=375.7
Q ss_pred CHHHHHHHHHHCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHH-
Q ss_conf 5899999999848732135476300122334469998887876530144678863200001444099999999999987-
Q 003559 135 DQLFLIKCVIAAGQEHVLNLEPEYVESEARSDIKSALYALVEFIDRLDVNGRNSEAKDAVLEIEQVKDLNKLLKTLAEI- 213 (811)
Q Consensus 135 ~~~~l~~~L~~~gQ~Hll~~~~~w~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~~~~~~k~~Ll~qL~~l- 213 (811)
++..|+++|.++||+|||++|++ |+++ +|++|++||..+
T Consensus 5 ~~~~l~~~l~~~gQ~hl~~~~~~-------------------------------------l~~~---ek~~l~~ql~~~~ 44 (486)
T 2yqc_A 5 SQQQIIDSFKQANQDQLFQYYDS-------------------------------------LTID---QQQEFIDQLSTIE 44 (486)
T ss_dssp CHHHHHHHHHHTTCGGGGTTGGG-------------------------------------SCHH---HHHHHHHHHHTSS
T ss_pred HHHHHHHHHHHCCCHHHHHHHCC-------------------------------------CCHH---HHHHHHHHHHHCC
T ss_conf 49999999998485877622403-------------------------------------9999---9999999998472
Q ss_pred HCCCCCCCHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCC--CCCCCCCCCC---CCHHHHHHHHHHHHHCCC-
Q ss_conf 3113586606779999999997031112356553422212244533--3599976568---781899999997651049-
Q 003559 214 EQFYDCVGGIIGYQVEVLELLAQSKFERKTTKSQHVHESMECQFLE--IHVPSGLDLS---QNTEYAAQAALWGIEGLP- 287 (811)
Q Consensus 214 d~~y~~~gGl~~Y~~~a~~ll~~s~~~~~~~~~~~~~~~~~~~~~~--~~vP~g~~l~---~~~~~~~~~e~~Gle~l~- 287 (811)
|. .++..|+.++.+ .+. . . .+++ .++|.+...+ .+++...+|+++|+++|+
T Consensus 45 d~-----~~l~~~~~~~~~---~~~--~-~------------~~~~~i~p~p~~~~~~~~~~~~~~~~~~~~~G~~~i~~ 101 (486)
T 2yqc_A 45 EP-----AKLISTVEQAIQ---FSQ--T-N------------STSRNFTQLPNEQTASTLDLSKDILQNWTELGLKAIGN 101 (486)
T ss_dssp SH-----HHHHHHHHHHHH---HTC-------------------CCCEECCCGGGEEETTTSCHHHHHHHHHHHHHHHHT
T ss_pred CH-----HHHHHHHHHHHH---CCC--C-C------------CCCCCCCCCCHHHCCCCCCCCHHHHHHHHHHHHHHHHH
T ss_conf 87-----999999999872---234--5-6------------54566467986652343347867889999999998852
Q ss_pred -CEEEEEECCCCCCCCCCCCCCCCCEEECCCCCCCCCCCHHHHHHHHHHHHHHHHHHCC--CCCCCEEEEECCCCCCCHH
Q ss_conf -4889991589656689999998813426546899985249999999999988676319--9221129996599998469
Q 003559 288 -ELGEIYPLGGSADRLGLVDHETGECLPAAMLPYCGRTLLEGLIRDLQAREFLYFKLYG--KQCITPVAIMTSSAKNNHE 364 (811)
Q Consensus 288 -kvavIlLAGGlGTRLG~~~pKgg~~lpv~l~~~sgkTlLql~ie~I~~lq~la~k~~G--~~~~IPl~IMTS~~~~Th~ 364 (811)
|+++|+||||+|||||++.||+ |+||+++ +|+||||+++++|+++++++.+++| +.+.|||+||||+ .||+
T Consensus 102 gkvavvlLaGG~GTRLg~~~PK~--l~~v~l~--~gk~~l~~~~e~l~~~~~~~~~~~G~~~~~~ip~~ImtS~--~t~~ 175 (486)
T 2yqc_A 102 GEVAVLLMAGGQGTRLGSSAPKG--CFNIELP--SQKSLFQIQAEKILKIEQLAQQYLKSTKKPIINWYIMTSG--PTRN 175 (486)
T ss_dssp TCEEEEEEEESBCGGGTCSSBGG--GCBCCCT--TCCBHHHHHHHHHHHHHHHHHHHHTCSSCCCCEEEEEECG--GGHH
T ss_pred CCEEEEEECCCCCCCCCCCCCCC--CCEECCC--CCCCHHHHHHHHHHHHHHHHHHHCCCCCCCCCCEEEEECC--CCHH
T ss_conf 98699997388434478997875--6433278--9996999999999999887664148876774688999789--7779
Q ss_pred HHHHHHHHHCCCCCCCCCEEEEECCCEEEEECCCC-CCCCCCCCCCCCCCCCCCHHHHHHHHCCCHHHHHHCCCEEEEEE
Q ss_conf 99999998079988998539985497104726998-03022799752147998178799983490379997694399999
Q 003559 365 RITSLCERLRWFGRGQSSFQLFEQPLVPAVDAEDG-QWLVMRPFAPVCKPGGHGAIWKLAHDKGIFKWFHDNGRKGATVR 443 (811)
Q Consensus 365 ~T~~~le~n~yFGl~~~qV~~F~Q~~vP~l~~~dg-kl~l~~~~~i~~~P~GHGdIy~aL~~sGiLd~l~~~Gikyi~v~ 443 (811)
.|++||++|+|||++.++|+||+|+++||++. +| ++++++++.++|+|+||||+|.+|+++|+|++|.++|++|++|+
T Consensus 176 ~t~~~~~~~~~fgl~~~~v~~f~Q~~~P~i~~-dg~~i~l~~~~~i~~~P~G~Ggi~~aL~~sG~Ld~l~~~G~~yi~v~ 254 (486)
T 2yqc_A 176 ATESFFIENNYFGLNSHQVIFFNQGTLPCFNL-QGNKILLELKNSICQSPDGNGGLYKALKDNGILDDLNSKGIKHIHMY 254 (486)
T ss_dssp HHHHHHHHTGGGGSCGGGEEEEECCEEECBCT-TSSSBCEEETTEECEEECCGGGHHHHHHHTTHHHHHHHHTCCEEEEE
T ss_pred HHHHHHHHCCCCCCCCCEEEEEECCCCEEECC-CCCCCCCCCCCCCCCCCCCCHHHHHHHHHCCCHHHHHHCCCEEEEEE
T ss_conf 99999865423698741179995165103867-87721247887504075982599999987675899986498699998
Q ss_pred ECCCCCCCC-CHHHHHHHHHHHHCCCCEEEEEEEECCCCCCCCEEEEEEECCCCCCCCCEEEEEECCCCCCCCCCCCCCC
Q ss_conf 279874334-4758998653441399525789620379876723899874279950166289980355865677898999
Q 003559 444 QVSNVVAAT-DLTLLALAGIGLHHGKKLGFASCKRSSGATEGINVLIEKKNLDGKWAYGLSCIEYTEFDKFGITRGPFSS 522 (811)
Q Consensus 444 qvDN~La~v-DP~il~~lG~~~~~~~~~~~~~v~RK~~~~e~vGvL~~~~~~dGk~~~~~~vVEYsEl~~~~~~~~~~~d 522 (811)
|+||+|+++ ||.| +|++..+++++++++ ++|+.++|++|++|+. ..||+ +++|||+|++++. ++..+.+
T Consensus 255 ~vDN~l~~~~Dp~~---lg~~~~~~~~~~~~v-v~k~~~~e~~Gvl~~~-~~dg~----~~vvEy~E~~~~~-~~~~~~~ 324 (486)
T 2yqc_A 255 CVDNCLVKVADPIF---IGFAIAKKFDLATKV-VRKRDANESVGLIVLD-QDNQK----PCVIEYSEISQEL-ANKKDPQ 324 (486)
T ss_dssp ETTBTTCCTTCHHH---HHHHHHHTCSEEEEE-EECCSTTCCCCEEEEE-TTTTE----EEEECGGGSCHHH-HHCEETT
T ss_pred CCCCCEEECCCHHH---HHHHHHCCCCEEEEE-EECCCCCCCEEEEEEE-ECCCC----EEEEEEECCCHHH-HHCCCCC
T ss_conf 78873020147999---999987499789999-9868888750189998-06997----8999986079878-6102544
Q ss_pred --CCCCCCCC-CCEEEEEEEHHHHHHHHCCCCCCC---CCCCCCCCCCCCCEECC-CCCC---CCCCCCCCCCCHHHHHH
Q ss_conf --98555565-513355673888996502356688---55400024898510069-9995---34585200100024563
Q 003559 523 --NGLQADFP-ANTNILYVDLASAELVGSSENERS---LPGMVLNTKKPIVYMDN-FGDT---HSVPGGRLECTMQNIAD 592 (811)
Q Consensus 523 --g~l~s~f~-~Ninnl~~~L~~l~~vl~~~~~~~---Lp~hianpKKkIpy~D~-~g~~---~~~~p~rLE~~Mqdi~~ 592 (811)
+.+ .|+ +|||||||++++|++++.. ..+. ||+|++. |||||+|. .|.. ..++++||||||||++.
T Consensus 325 ~~~~~--~~~~~Ni~~~~~~l~~L~~~l~~-~~~~~~~lp~~v~~--Kki~~~d~~~g~~~~p~~pn~~klE~~~~d~~~ 399 (486)
T 2yqc_A 325 DSSKL--FLRAANIVNHYYSVEFLNKMIPK-WISSQKYLPFHIAK--KKIPSLNLENGEFYKPTEPNGIKLEQFIFDVFP 399 (486)
T ss_dssp EEEEE--SSCEEEEEEEEEEHHHHHHHHHH-HTTCTTTSCCEEEE--ECCCEECTTTCCEECCSSCCEEEEECCGGGGGG
T ss_pred CCCCC--CCCCEEEEEEEEEHHHHHHHHHH-HCCCCCCCCCEEEC--CCCCCCCCCCCEECCCCCCCEEEEEEHHHHHHH
T ss_conf 56643--33630699999739999999875-23765677543743--555734656681536788873654116765776
Q ss_pred HHCCCCCCCCCCCEEEECCCCEEEEECCCCCCHHHHHCCCCCCCCCCCHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCC
Q ss_conf 10022445655420343264113310258885366530123778999935469999999999998779514765578733
Q 003559 593 NFLNTYSSRCYKGVEDDLDTFMVYNERRRVTSSAKKKRKRADMSLHQTPDGSFLDILRNAYDILCQCHIKLPEIEGNDKY 672 (811)
Q Consensus 593 ~F~~~y~~~~~~~~f~~~~r~~~FsPvKn~~~sa~k~~~~~~~~~~~sp~ta~~dl~~~~~~~L~~aG~~vp~~~~~~~~ 672 (811)
.|+ ..++++++++|+.+|+||||+++++ .|||+||+.|+|+++++||++||+++++ ...
T Consensus 400 ~~~------l~~~~~~~V~R~~~FsPvKn~~~~~-----------~dsp~ta~~~l~~~~~~~l~~aG~~~~~----~~~ 458 (486)
T 2yqc_A 400 SVE------LNKFGCLEVDRLDEFSPLKNADGAK-----------NDTPTTCRNHYLERSSKWVIQNGGVIDN----QGL 458 (486)
T ss_dssp GSC------GGGEEEEEECHHHHCCBCCSCTTSS-----------SSSHHHHHHHHHHHHHHHHHHTTCEECT----TCC
T ss_pred HCC------CCCEEEEEECCCCCEEEECCCCCCC-----------CCCHHHHHHHHHHHHHHHHHHCCCEECC----CCC
T ss_conf 446------6756999977522356412799987-----------7798999999999999999987886268----983
Q ss_pred CCCCCCEEEEECCC
Q ss_conf 23699806985787
Q 003559 673 IDDGPPYLILLHPA 686 (811)
Q Consensus 673 ~~~gP~~~I~L~P~ 686 (811)
+++.|. |.+.-.
T Consensus 459 ~eisp~--~sy~ge 470 (486)
T 2yqc_A 459 VEVDSK--TSYGGE 470 (486)
T ss_dssp CBCCTT--TCSSST
T ss_pred EEECCE--EEECCC
T ss_conf 788652--468788
No 3
>3r3i_A UTP--glucose-1-phosphate uridylyltransferase; rossmann fold, beta barrel, nucleotidyltransferase; 3.57A {Homo sapiens} PDB: 3r2w_A
Probab=1.00 E-value=1 Score=683.92 Aligned_cols=444 Identities=17% Similarity=0.184 Sum_probs=354.2
Q ss_pred CCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHH
Q ss_conf 73213547630012233446999888787653014467886320000144409999999999998731135866067799
Q 003559 148 QEHVLNLEPEYVESEARSDIKSALYALVEFIDRLDVNGRNSEAKDAVLEIEQVKDLNKLLKTLAEIEQFYDCVGGIIGYQ 227 (811)
Q Consensus 148 Q~Hll~~~~~w~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~~~~~~k~~Ll~qL~~ld~~y~~~gGl~~Y~ 227 (811)
|+||+++|++ |+++ ++..|..|+..+.. ++
T Consensus 53 ~~~l~~~~~~-------------------------------------l~~~---~~~~~~~el~~f~~----------lf 82 (528)
T 3r3i_A 53 KKELEKILTT-------------------------------------ASSH---EFEHTKKDLDGFRK----------LF 82 (528)
T ss_dssp TSSSTTTSSS-------------------------------------CCTT---TTHHHHHHHHHHHH----------HH
T ss_pred HHHHHHHHHH-------------------------------------CCHH---HHHHHHHHHHHHHH----------HH
T ss_conf 9999999986-------------------------------------6998---89999999999999----------99
Q ss_pred HHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCC-CCCCCCCCCCCHHHHHHHHHH--HHHCCCCEEEEEECCCCCCCCCC
Q ss_conf 999999970311123565534222122445333-599976568781899999997--65104948899915896566899
Q 003559 228 VEVLELLAQSKFERKTTKSQHVHESMECQFLEI-HVPSGLDLSQNTEYAAQAALW--GIEGLPELGEIYPLGGSADRLGL 304 (811)
Q Consensus 228 ~~a~~ll~~s~~~~~~~~~~~~~~~~~~~~~~~-~vP~g~~l~~~~~~~~~~e~~--Gle~l~kvavIlLAGGlGTRLG~ 304 (811)
+++ +.... .... ++.+ ++|+....++.+. ..++.. ...++.|+|||+||||||||||+
T Consensus 83 ~r~---l~~~~--~~~~------------~~~i~p~p~~~~~~~~~l--~~~~~~~~~~~~l~kvavvlLaGGlGTRLG~ 143 (528)
T 3r3i_A 83 HRF---LQEKG--PSVD------------WGKIQRPPEDSIQPYEKI--KARGLPDNISSVLNKLVVVKLNGGLGTSMGC 143 (528)
T ss_dssp HHH---HHC---------------------CCCCCCCTTTSEEHHHH--TTSCCCCSSCTTCTTEEEEEECCCBCTTTTC
T ss_pred HHH---HHHCC--CCCC------------HHHCCCCCHHHCCCHHHC--CCCCCCCHHHHHCCCEEEEEECCCCCCCCCC
T ss_conf 999---86266--7888------------898738988985487665--7754442346520766899957887444689
Q ss_pred CCCCCCCEEECCCCCCCCCCCHHHHHHHHHHHHHHHHHHCCCCCCCEEEEECCCCCCCHHHHHHHHHHHCCCCCCCCCEE
Q ss_conf 99998813426546899985249999999999988676319922112999659999846999999998079988998539
Q 003559 305 VDHETGECLPAAMLPYCGRTLLEGLIRDLQAREFLYFKLYGKQCITPVAIMTSSAKNNHERITSLCERLRWFGRGQSSFQ 384 (811)
Q Consensus 305 ~~pKgg~~lpv~l~~~sgkTlLql~ie~I~~lq~la~k~~G~~~~IPl~IMTS~~~~Th~~T~~~le~n~yFGl~~~qV~ 384 (811)
++||+ +|||. +++||||++++||++++ ++|| +.||||||||+ +||++|++||++|+||| .+|+
T Consensus 144 ~~PK~--~i~V~----sgktflql~~eqI~~l~----~~~g--~~IPl~IMTS~--~T~~~T~~~f~k~~~fg---~~V~ 206 (528)
T 3r3i_A 144 KGPKS--LIGVR----NENTFLDLTVQQIEHLN----KTYN--TDVPLVLMNSF--NTDEDTKKILQKYNHCR---VKIY 206 (528)
T ss_dssp SSBGG--GSEEE----TTEEHHHHHHHHHHHHH----HHHT--CCCCEEEEECT--TTHHHHHSSCGGGTTSS---CCEE
T ss_pred CCCCC--CEECC----CCCCHHHHHHHHHHHHH----HHHC--CCCCEEEEECC--CHHHHHHHHHHHCCCCC---CCEE
T ss_conf 98851--10249----99819999999999999----9729--99888999565--31699999999667668---8769
Q ss_pred EEECCCEEEEECCCCCCCCCC------CCCCCCCCCCCCHHHHHHHHCCCHHHHHHCCCEEEEEEECCCCCCCCCHHHHH
Q ss_conf 985497104726998030227------99752147998178799983490379997694399999279874334475899
Q 003559 385 LFEQPLVPAVDAEDGQWLVMR------PFAPVCKPGGHGAIWKLAHDKGIFKWFHDNGRKGATVRQVSNVVAATDLTLLA 458 (811)
Q Consensus 385 ~F~Q~~vP~l~~~dgkl~l~~------~~~i~~~P~GHGdIy~aL~~sGiLd~l~~~Gikyi~v~qvDN~La~vDP~il~ 458 (811)
+|+|+++||++ .+|+++++. +++++|+|+||||||.+|+++|+|++|+++|+||+||+||||+||++||.|
T Consensus 207 ~F~Q~~~P~i~-~dg~l~l~~~~~~~~~~~~~~~P~GhGdiy~aL~~sGlLd~l~~~Gieyi~v~nvDNlga~vDp~~-- 283 (528)
T 3r3i_A 207 TFNQSRYPRIN-KESLLPVAKDVSYSGENTEAWYPPGHGDIYASFYNSGLLDTFIGEGKEYIFVSNIDNLGATVDLYI-- 283 (528)
T ss_dssp EEECCCBCCEE-TTTCCCC-------------CBCCBTTTHHHHHHHHSHHHHHHHTTCCEEEEEETTBTTCCCCHHH--
T ss_pred EEEECCEEEEE-CCCCEECCCCCCCCCCCCEEECCCCCHHHHHHHHHCCHHHHHHHCCCEEEEEECCCCCCCCCCHHH--
T ss_conf 99818743694-588533246445577752104768975999998878829999965988999982687563369999--
Q ss_pred HHHHHHHC----CCCEEEEEEEECCCCCCCCEEEEEEECCCCCCCCCEEEEEECCCCCCCCCCCCCCCCCCCCCCCC-CE
Q ss_conf 86534413----99525789620379876723899874279950166289980355865677898999985555655-13
Q 003559 459 LAGIGLHH----GKKLGFASCKRSSGATEGINVLIEKKNLDGKWAYGLSCIEYTEFDKFGITRGPFSSNGLQADFPA-NT 533 (811)
Q Consensus 459 ~lG~~~~~----~~~~~~~~v~RK~~~~e~vGvL~~~~~~dGk~~~~~~vVEYsEl~~~~~~~~~~~dg~l~s~f~~-Ni 533 (811)
+|+++.. +++|++++ ++|+.|+|+||+||+ .||+ +++|||+|++++.. + +.++.++|++ ||
T Consensus 284 -Lg~~~~~~~~~~~d~~~kV-v~Kt~~dek~Gvl~~---~dGk----~~vvEyseip~e~~-~----~~~g~~~f~~~Nt 349 (528)
T 3r3i_A 284 -LNHLMNPPNGKRCEFVMEV-TNKTRADVKGGTLTQ---YEGK----LRLVEIAQVPKAHV-D----EFKSVSKFKIFNT 349 (528)
T ss_dssp -HHHHSSCSSSCCCSEEEEE-CCCCTTCCSSCEEEC---SSSS----CEEECTTSSCGGGT-T----TSSCSSSCCCCEE
T ss_pred -HHHHHHCCCCCCCCEEEEE-EECCCCCCCCCEEEE---ECCE----EEEEEECCCCHHHH-H----CCCCCCCCCEEEE
T ss_conf -8998855556687578899-685546786218999---8990----79999537896675-2----3577646786799
Q ss_pred EEEEEEHHHHHHHHCCCCCCCCCCCCCCCCCCCCEECCCCCCCCCCCCCCCCCHHHHHHHHCCCCCCCCCCCEEEECCCC
Q ss_conf 35567388899650235668855400024898510069999534585200100024563100224456554203432641
Q 003559 534 NILYVDLASAELVGSSENERSLPGMVLNTKKPIVYMDNFGDTHSVPGGRLECTMQNIADNFLNTYSSRCYKGVEDDLDTF 613 (811)
Q Consensus 534 nnl~~~L~~l~~vl~~~~~~~Lp~hianpKKkIpy~D~~g~~~~~~p~rLE~~Mqdi~~~F~~~y~~~~~~~~f~~~~r~ 613 (811)
|||||+|++|+++++. ....||.|+ |+| ++|. .++++|||++|+|++..|++ ....+++|+
T Consensus 350 nnlw~~L~~L~~v~~~-~~l~Lp~iv-n~K----~vd~-----~~~viqlEt~igd~i~~f~~--------~~~i~VpR~ 410 (528)
T 3r3i_A 350 NNLWISLAAVKRLQEQ-NAIDMEIIV-NAK----TLDG-----GLNVIQLETAVGAAIKSFEN--------SLGINVPRS 410 (528)
T ss_dssp EEEEEEHHHHHHHHHT-TCCCCCCEE-EEE----CCSS-----SSCEEEEEBCSTTCSTTSSS--------CCCEECCGG
T ss_pred EEEEEEHHHHHHHHHH-CCCCCCCEE-CCC----CCCC-----CCCEEEEHHHHHHHHHHCCC--------CEEEEEEHH
T ss_conf 9898999999999970-788787054-575----1599-----98788708899999873357--------479997367
Q ss_pred EEEEECCCCCCHHHHHCCCCCCCCCCCHHHHHHHHHHHHHHHHHHCCCCCCCCC-CCCCCCCCCCCEEEEECCCCCCCHH
Q ss_conf 133102588853665301237789999354699999999999987795147655-7873323699806985787541199
Q 003559 614 MVYNERRRVTSSAKKKRKRADMSLHQTPDGSFLDILRNAYDILCQCHIKLPEIE-GNDKYIDDGPPYLILLHPALGLLWE 692 (811)
Q Consensus 614 ~~FsPvKn~~~sa~k~~~~~~~~~~~sp~ta~~dl~~~~~~~L~~aG~~vp~~~-~~~~~~~~gP~~~I~L~P~~~~~~~ 692 (811)
- |+||||+. +. .+++..-+.+..-. ........+..++|.|+|. |++++
T Consensus 411 r-F~PvKn~s-dL---------------------------ll~~Sdly~l~~g~l~~~~~r~~~~~P~v~L~~~-~~~v~ 460 (528)
T 3r3i_A 411 R-FLPVKTTS-DL---------------------------LLVMSNLYSLNAGSLTMSEKREFPTVPLVKLGSS-FTKVQ 460 (528)
T ss_dssp G-CCBCCSHH-HH---------------------------HHHHSTTSEEETTEEECCSSCSSCCCCEEEECTT-SCSHH
T ss_pred H-CCCCCCHH-HH---------------------------HHHHCCEEEEECCEEEECCCCCCCCCCEEEECCC-CCCHH
T ss_conf 8-64256667-88---------------------------7874203574077688565445799987882866-57699
Q ss_pred HHHHCCCC-CCCCCCCEEEEEECEEEEECEEEEEEEEEEECCCCCCCCCCCCCC
Q ss_conf 88300599-977898679999563996264999889998126899820048985
Q 003559 693 VTRQKFKG-GSVSKGSELQIEVAEFLWRNVQLDGSLIIVAENVMGSTRIADNGE 745 (811)
Q Consensus 693 ~~~~k~~~-gsis~~S~L~VeG~~~~~~~v~LdGslvI~a~~~~g~~~~~~~g~ 745 (811)
+|.+||++ +||.++++|+|.|+++|++||.|+|+|+|.|. .|.+...|+|.
T Consensus 461 ~f~~rf~~iP~l~~~~~LtV~Gdv~fg~~v~l~G~v~i~~~--~g~~~~ip~g~ 512 (528)
T 3r3i_A 461 DYLRRFESIPDMLELDHLTVSGDVTFGKNVSLKGTVIIIAN--HGDRIDIPPGA 512 (528)
T ss_dssp HHHHHCSSCCEEEEEEEEEEESEEECCTTCEEEEEEEEECC--TTCEEECCTTC
T ss_pred HHHHHCCCCCCCCCCCEEEEECCEEECCCCEEEEEEEEECC--CCCCEECCCCC
T ss_conf 99975799997212887999444597799689989999848--99802339998
No 4
>3gue_A UTP-glucose-1-phosphate uridylyltransferase 2; phosphatase, UDP, structural GE structural genomics consortium, SGC; HET: UPG PG4; 1.92A {Trypanosoma brucei}
Probab=1.00 E-value=1 Score=669.79 Aligned_cols=390 Identities=16% Similarity=0.094 Sum_probs=323.1
Q ss_pred HHHHCCCCEEEEEECCCCCCCCCCCCCCCCCEEECCCCCCCCCCCHHHHHHHHHHHHHHHHHHCCCCCCCEEEEECCCCC
Q ss_conf 76510494889991589656689999998813426546899985249999999999988676319922112999659999
Q 003559 281 WGIEGLPELGEIYPLGGSADRLGLVDHETGECLPAAMLPYCGRTLLEGLIRDLQAREFLYFKLYGKQCITPVAIMTSSAK 360 (811)
Q Consensus 281 ~Gle~l~kvavIlLAGGlGTRLG~~~pKgg~~lpv~l~~~sgkTlLql~ie~I~~lq~la~k~~G~~~~IPl~IMTS~~~ 360 (811)
.|+++|+|+|||+||||||||||+++||+ +|||+ +|+||||++++||+++|+ +++ +.||||||||+
T Consensus 69 ~G~~~L~kvavvlLaGGlGTRLG~~~pKg--~~~v~----sgksflql~~eqI~~l~~----~~~--~~iPl~IMTS~-- 134 (484)
T 3gue_A 69 ENTALLRQAVVLKLNGGLGTGMGLNGPKS--LLQVK----NGQTFLDFTALQLEHFRQ----VRN--CNVPFMLMNSF-- 134 (484)
T ss_dssp CCHHHHTTEEEEEEECCCCGGGTCSSCGG--GSEEE----TTEEHHHHHHHHHHHHHH----HHT--CCCCEEEEECT--
T ss_pred HHHHHHHHCEEEEECCCCCCCCCCCCCCE--EEECC----CCCCHHHHHHHHHHHHHH----HCC--CCCEEEEECCC--
T ss_conf 78998863679997688623358988854--33659----998699999999999997----759--98129997780--
Q ss_pred CCHHHHHHHHHHHCCCCCCCCCEEEEECCCEEEEECCCCCCC-CCCCCCCCCCCCCCCHHHHHHHHCCCHHHHHHCCCEE
Q ss_conf 846999999998079988998539985497104726998030-2279975214799817879998349037999769439
Q 003559 361 NNHERITSLCERLRWFGRGQSSFQLFEQPLVPAVDAEDGQWL-VMRPFAPVCKPGGHGAIWKLAHDKGIFKWFHDNGRKG 439 (811)
Q Consensus 361 ~Th~~T~~~le~n~yFGl~~~qV~~F~Q~~vP~l~~~dgkl~-l~~~~~i~~~P~GHGdIy~aL~~sGiLd~l~~~Giky 439 (811)
+||++|++||++|+|||+++++|++|+|+++||++.+++.++ ++++++++|+|+||||||.+|++||+|++|+++|+||
T Consensus 135 ~T~~~T~~~~~k~~~Fgl~~~~v~~F~Q~~~P~i~~dg~~~i~~~~~~~i~~~P~GhGdiy~aL~~sGiLd~l~~~Giey 214 (484)
T 3gue_A 135 STSGETKNFLRKYPTLYEVFDSDIELMQNRVPKIRQDNFFPVTYEADPTCEWVPPGHGDVYTVLYSSGKLDYLLGKGYRY 214 (484)
T ss_dssp TTHHHHHHHGGGCHHHHTTCCCCCEEECCCEECEETTTCCBCCCTTCGGGGEECCCGGGHHHHHHHHSHHHHHHHTTCCE
T ss_pred CHHHHHHHHHHHCCCCCCCCCCEEEEEECCEEEEECCCCCEEECCCCCCEEECCCCCHHHHHHHHHCCCHHHHHHCCCEE
T ss_conf 05689999999674557884345999817656696588856523898733344079658999988688299999769889
Q ss_pred EEEEECCCCCCCCCHHHHHHHHHHHHCCCCEEEEEEEECCCCCCCCEEEEEE-------ECCCCCCCCCEEEEEECCCCC
Q ss_conf 9999279874334475899865344139952578962037987672389987-------427995016628998035586
Q 003559 440 ATVRQVSNVVAATDLTLLALAGIGLHHGKKLGFASCKRSSGATEGINVLIEK-------KNLDGKWAYGLSCIEYTEFDK 512 (811)
Q Consensus 440 i~v~qvDN~La~vDP~il~~lG~~~~~~~~~~~~~v~RK~~~~e~vGvL~~~-------~~~dGk~~~~~~vVEYsEl~~ 512 (811)
+||+||||+++..||.| +|+++.++++|++++ ++|+.++|+||+||+. .+.||+ ++++||+|+++
T Consensus 215 i~v~~vDNL~a~~Dp~~---lG~~~~~~~d~~~kv-v~Kt~~dekgG~l~~~~~~~~~~~~~dG~----~~vvEyseip~ 286 (484)
T 3gue_A 215 MFISNGDNLGATLDVRL---LDYMHEKQLGFLMEV-CRRTESDKKGGHLAYKDVIDETTGQTRRR----FVLRESAQCPK 286 (484)
T ss_dssp EEEEETTCTTCCCCHHH---HHHHHHTTCSEEEEE-EECCTTCCSSEEEEEEC--------CCCE----EEEEEGGGSCG
T ss_pred EEEECCCCCCCCCCHHH---HHHHHHCCCCEEEEE-EECCCCCCCEEEEEEECCCCCCCCCCCCC----EEEEEECCCCH
T ss_conf 99985787542269999---999986599789999-88878988453899971244545378998----89999545997
Q ss_pred CCCCCCCCCCCCCCCCCCC-CEEEEEEEHHHHHHHHCCCC--CCCCCCCCCCCCCCCCEECCCCCCCCCCCCCCCCCHHH
Q ss_conf 5677898999985555655-13355673888996502356--68855400024898510069999534585200100024
Q 003559 513 FGITRGPFSSNGLQADFPA-NTNILYVDLASAELVGSSEN--ERSLPGMVLNTKKPIVYMDNFGDTHSVPGGRLECTMQN 589 (811)
Q Consensus 513 ~~~~~~~~~dg~l~s~f~~-Ninnl~~~L~~l~~vl~~~~--~~~Lp~hianpKKkIpy~D~~g~~~~~~p~rLE~~Mqd 589 (811)
+...+....++ |.. ||||+|+++.+|+++++. . ...||+|++. |+ +|.. ++.+++++||||||||
T Consensus 287 e~~~~f~~~~g-----~~~FNtnNi~~~l~~l~~~l~~-~~g~~~Lp~~vn~--K~---id~~-k~~~~~~iqlE~~~~d 354 (484)
T 3gue_A 287 EDEDSFQNIAK-----HCFFNTNNIWINLMELKKMMDE-QLGVLRLPVMRNP--KT---VNPQ-DSQSTKVYQLEVAMGA 354 (484)
T ss_dssp GGHHHHTCTTT-----SCEEEEEEEEEEHHHHHHHHHH-TTTCCCCCCEEEE--EE---SSTT-CTTSCEEEEEECCGGG
T ss_pred HHHHHHCCCCC-----CEEEEEEEEEEEHHHHHHHHHH-CCCCCCCCCEECC--CE---ECCC-CCCCCCEEEHHHHHHH
T ss_conf 78754207777-----4576751588889999999984-1575788868624--14---4687-7889877146879999
Q ss_pred HHHHHCCCCCCCCCCCEEEECCCCEEEEECCCCCCHHHHHCCCCCCCCCCCHHHHHHHHHHHHHHHHHHCCCCCCCC---
Q ss_conf 56310022445655420343264113310258885366530123778999935469999999999998779514765---
Q 003559 590 IADNFLNTYSSRCYKGVEDDLDTFMVYNERRRVTSSAKKKRKRADMSLHQTPDGSFLDILRNAYDILCQCHIKLPEI--- 666 (811)
Q Consensus 590 i~~~F~~~y~~~~~~~~f~~~~r~~~FsPvKn~~~sa~k~~~~~~~~~~~sp~ta~~dl~~~~~~~L~~aG~~vp~~--- 666 (811)
++..|+ ++++.+++| .+|+||||. ++. .+++...+.+.+.
T Consensus 355 ~~~~~~--------~~~~ieV~R-~rF~PvKn~-sdL---------------------------l~~~Sdly~l~~~~~l 397 (484)
T 3gue_A 355 AISLFD--------RSEAVVVPR-ERFAPVKTC-SDL---------------------------LALRSDAYQVTEDQRL 397 (484)
T ss_dssp GGTTSS--------SEEEEECCG-GGCCCCSSH-HHH---------------------------HHHHSTTEEECTTSCE
T ss_pred HHHHCC--------CCEEEEECH-HHCCCCCCC-HHH---------------------------HHHHHHCEECCCCCEE
T ss_conf 998478--------617999772-031545660-578---------------------------9986430051579607
Q ss_pred CCCCCCCCCCCCEEEEECCCCCCCHHHHHHCCCC--CCCCCCCEEEEEECEEEEECEEEEEEEEEEECCCCCCCCCCCCC
Q ss_conf 5787332369980698578754119988300599--97789867999956399626499988999812689982004898
Q 003559 667 EGNDKYIDDGPPYLILLHPALGLLWEVTRQKFKG--GSVSKGSELQIEVAEFLWRNVQLDGSLIIVAENVMGSTRIADNG 744 (811)
Q Consensus 667 ~~~~~~~~~gP~~~I~L~P~~~~~~~~~~~k~~~--gsis~~S~L~VeG~~~~~~~v~LdGslvI~a~~~~g~~~~~~~g 744 (811)
..+..-....| +|.|+|.+|+++++|++||++ +||.++++|+|.|+++|++||.|+|+|+|.|. .|.....|+|
T Consensus 398 ~~~~~~~~~~P--~v~L~~~~~~~v~~f~~rf~~giPsl~~~~~L~V~Gdv~fg~~v~l~G~v~i~~~--~g~~~~ip~g 473 (484)
T 3gue_A 398 VLCEERNGKPP--AIDLDGEHYKMIDGFEKLVKGGVPSLRQCTSLTVRGLVEFGADVSVRGNVVIKNL--KEEPLIIGSG 473 (484)
T ss_dssp EECGGGTTCCC--EEEECTTTSSSHHHHHHHHTTCCCBCTTEEEEEEESSEEECTTCEEEEEEEEEEC--SSSCEEECTT
T ss_pred EECCCCCCCCC--EEEECCHHCCCHHHHHHHCCCCCCCHHHCCEEEEECCEEECCCCEEEEEEEEECC--CCCEEECCCC
T ss_conf 74665579999--6997905637699998756878997301887999666598799589988999868--9981452899
Q ss_pred C
Q ss_conf 5
Q 003559 745 E 745 (811)
Q Consensus 745 ~ 745 (811)
.
T Consensus 474 ~ 474 (484)
T 3gue_A 474 R 474 (484)
T ss_dssp C
T ss_pred C
T ss_conf 8
No 5
>1jv1_A Glcnac1P uridyltransferase isoform 1: AGX1; nucleotidyltransferase, alternative splicing; HET: UD1; 1.90A {Homo sapiens} SCOP: c.68.1.5 PDB: 1jv3_A* 1jvg_A* 1jvd_A* 1vm8_A*
Probab=1.00 E-value=1 Score=658.84 Aligned_cols=430 Identities=20% Similarity=0.234 Sum_probs=369.1
Q ss_pred CCHHHHHHHHHHCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHH
Q ss_conf 05899999999848732135476300122334469998887876530144678863200001444099999999999987
Q 003559 134 LDQLFLIKCVIAAGQEHVLNLEPEYVESEARSDIKSALYALVEFIDRLDVNGRNSEAKDAVLEIEQVKDLNKLLKTLAEI 213 (811)
Q Consensus 134 ~~~~~l~~~L~~~gQ~Hll~~~~~w~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~~~~~~k~~Ll~qL~~l 213 (811)
|++..|+++|.++||+|||++|++ |+++ +|++|++||..+
T Consensus 1 ~~~~~l~~~l~~~gQ~hl~~~~~~-------------------------------------l~~~---ek~~l~~ql~~~ 40 (505)
T 1jv1_A 1 MNINDLKLTLSKAGQEHLLRFWNE-------------------------------------LEEA---QQVELYAELQAM 40 (505)
T ss_dssp CCHHHHHHHHHHTTCGGGGTTGGG-------------------------------------SCHH---HHHHHHHHHHTC
T ss_pred CCHHHHHHHHHHCCCHHHHHHHHC-------------------------------------CCHH---HHHHHHHHHHHH
T ss_conf 988999999998583887744502-------------------------------------9999---999999999875
Q ss_pred HCCCCCCCHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCC-CCCCCCCCCCC--CHHHHHHHHHHHHHCC--CC
Q ss_conf 3113586606779999999997031112356553422212244533-35999765687--8189999999765104--94
Q 003559 214 EQFYDCVGGIIGYQVEVLELLAQSKFERKTTKSQHVHESMECQFLE-IHVPSGLDLSQ--NTEYAAQAALWGIEGL--PE 288 (811)
Q Consensus 214 d~~y~~~gGl~~Y~~~a~~ll~~s~~~~~~~~~~~~~~~~~~~~~~-~~vP~g~~l~~--~~~~~~~~e~~Gle~l--~k 288 (811)
|. .++..|+.++++.+..|.. .... .+. .++|.+...++ ..+....|++.|+++| .|
T Consensus 41 d~-----~~~~~~~~~~~~~~~~s~~-~~~~------------~~~i~p~p~~~~~~~~~~~~~~~~~~~~Gl~~i~~~k 102 (505)
T 1jv1_A 41 NF-----EELNFFFQKAIEGFNQSSH-QKNV------------DARMEPVPREVLGSATRDQDQLQAWESEGLFQISQNK 102 (505)
T ss_dssp CH-----HHHHHHHHHHHHCC------------------------CCBCCCGGGEEETTTTGGGHHHHHHHHHHHHHTTC
T ss_pred CH-----HHHHHHHHHHHHHHHHCCC-CCCC------------CCCCCCCCHHHCCCCCCCHHHHHHHHHHHHHHHCCCC
T ss_conf 98-----9999999999975431134-6761------------1255679867634545786788999997677640376
Q ss_pred EEEEEECCCCCCCCCCCCCCCCCEEECCCCCCCCCCCHHHHHHHHHHHHHHHHHHCCCCCCCEEEEECCCCCCCHHHHHH
Q ss_conf 88999158965668999999881342654689998524999999999998867631992211299965999984699999
Q 003559 289 LGEIYPLGGSADRLGLVDHETGECLPAAMLPYCGRTLLEGLIRDLQAREFLYFKLYGKQCITPVAIMTSSAKNNHERITS 368 (811)
Q Consensus 289 vavIlLAGGlGTRLG~~~pKgg~~lpv~l~~~sgkTlLql~ie~I~~lq~la~k~~G~~~~IPl~IMTS~~~~Th~~T~~ 368 (811)
+++|+||||+|||||++.||+ |+||+++ +|+||||+++++|+++|+++.+++|..+.|||+||||+ .||+.|++
T Consensus 103 vavViLAGG~GTRLg~~~PK~--l~pv~~~--~gk~~le~~~e~l~~lq~la~~~~G~~~~ip~vImtS~--~t~e~t~~ 176 (505)
T 1jv1_A 103 VAVLLLAGGQGTRLGVAYPKG--MYDVGLP--SRKTLFQIQAERILKLQQVAEKYYGNKCIIPWYIMTSG--RTMESTKE 176 (505)
T ss_dssp EEEEEECCCCCCTTSCSSCGG--GCCCCCT--TCCCHHHHHHHHHHHHHHHHHHHHSSCCCCCEEEEECT--TTHHHHHH
T ss_pred EEEEEECCCCCCCCCCCCCCC--CCEEECC--CCCCHHHHHHHHHHHHHHHHHHHCCCCCCCEEEEEECC--CCHHHHHH
T ss_conf 479997687466577997874--4565457--99809999999999999998875599766308999568--88899999
Q ss_pred HHHHHCCCCCCCCCEEEEECCCEEEEECCCCCCCCCCCCCCCCCCCCCCHHHHHHHHCCCHHHHHHCCCEEEEEEECCCC
Q ss_conf 99980799889985399854971047269980302279975214799817879998349037999769439999927987
Q 003559 369 LCERLRWFGRGQSSFQLFEQPLVPAVDAEDGQWLVMRPFAPVCKPGGHGAIWKLAHDKGIFKWFHDNGRKGATVRQVSNV 448 (811)
Q Consensus 369 ~le~n~yFGl~~~qV~~F~Q~~vP~l~~~dgkl~l~~~~~i~~~P~GHGdIy~aL~~sGiLd~l~~~Gikyi~v~qvDN~ 448 (811)
||++++|||+++++|++|+|+++||++ .+|++++++++.++|+|+||||+|++|+.+|++++|+++|++|++|+|+||+
T Consensus 177 ~f~~~~~fGl~~~~I~~f~Q~~~P~i~-~~g~~~l~~~~~~e~~P~GtGG~~~~L~~sg~L~~l~~~g~e~~~V~n~Dn~ 255 (505)
T 1jv1_A 177 FFTKHKYFGLKKENVIFFQQGMLPAMS-FDGKIILEEKNKVSMAPDGNGGLYRALAAQNIVEDMEQRGIWSIHVYCVDNI 255 (505)
T ss_dssp HHHHTGGGGSCGGGEEEEECCEEECEE-TTSCBCEEETTEECEEECCGGGHHHHHHHTTHHHHHHHTTCCEEEEEETTBT
T ss_pred HHHHHHHCCCCCCCEEEEEECCEEEEC-CCCCCCCCCCCCCCCCCCCCHHHHHHHHHCCCHHHHHHCCCCEEEEEECCCC
T ss_conf 997623138886726999825467786-7884134677521368899459999988767489998569987999978842
Q ss_pred CCCC-CHHHHHHHHHHHHCCCCEEEEEEEECCCCCCCCEEEEEEECCCCCCCCCEEEEEECCCCCCCCCCCCCCCCCCCC
Q ss_conf 4334-475899865344139952578962037987672389987427995016628998035586567789899998555
Q 003559 449 VAAT-DLTLLALAGIGLHHGKKLGFASCKRSSGATEGINVLIEKKNLDGKWAYGLSCIEYTEFDKFGITRGPFSSNGLQA 527 (811)
Q Consensus 449 La~v-DP~il~~lG~~~~~~~~~~~~~v~RK~~~~e~vGvL~~~~~~dGk~~~~~~vVEYsEl~~~~~~~~~~~dg~l~s 527 (811)
|+.+ ||.| +|++..+++++.+++ ++|+.+++++|++|. .||+ +++|||+|++++. .+....+|.+
T Consensus 256 L~~~~d~~~---lg~~~~~~~~~~~~v-~~k~~~~e~~Gvl~~---~dg~----~~vvEy~E~p~~~-~~~~~~~g~~-- 321 (505)
T 1jv1_A 256 LVKVADPRF---IGFCIQKGADCGAKV-VEKTNPTEPVGVVCR---VDGV----YQVVEYSEISLAT-AQKRSSDGRL-- 321 (505)
T ss_dssp TCCTTCHHH---HHHHHHTTCSEEEEE-EECCSTTCSCCEEEE---ETTE----EEEECGGGSCHHH-HHCBCTTSSB--
T ss_pred CCCCCHHHH---HHHHHHCCCCEEEEE-EECCCCCCCCCEEEE---ECCE----EEEEEEEECCHHH-HHHCCCCCCC--
T ss_conf 300055999---999997599789999-976578667434999---8991----8999974089878-6311556642--
Q ss_pred CCCC-CEEEEEEEHHHHHHHHCCCCCCCCCCCCCCCCCCCCEECCCCCCC---CCCCCCCCCCHHHHHHHHCCCCCCCCC
Q ss_conf 5655-133556738889965023566885540002489851006999953---458520010002456310022445655
Q 003559 528 DFPA-NTNILYVDLASAELVGSSENERSLPGMVLNTKKPIVYMDNFGDTH---SVPGGRLECTMQNIADNFLNTYSSRCY 603 (811)
Q Consensus 528 ~f~~-Ninnl~~~L~~l~~vl~~~~~~~Lp~hianpKKkIpy~D~~g~~~---~~~p~rLE~~Mqdi~~~F~~~y~~~~~ 603 (811)
.|+. |||||||++++|+++.+. ..+.||+|++. |||||+|.+|... .++++||||||||++..|+
T Consensus 322 ~~~~~N~~~~~f~l~~L~~i~~~-~~~~l~~hv~~--Kkip~~d~~g~~v~P~~pn~~klE~~i~d~~~~~~-------- 390 (505)
T 1jv1_A 322 LFNAGNIANHFFTVPFLRDVVNV-YEPQLQHHVAQ--KKIPYVDTQGQLIKPDKPNGIKMEKFVFDIFQFAK-------- 390 (505)
T ss_dssp SSCEEEEEEEEEEHHHHHHHHHT-TGGGCCCEEEE--ECCCEECTTSCEECCSSCCEEEEECCGGGGGGGCS--------
T ss_pred CCCEEEEEEEEECHHHHHHHHHH-HCCCCCCEECC--CCCCCCCCCCCCCCCCCCCCEEHHHHHHHHHHHCC--------
T ss_conf 34500499899639999999774-00467743514--52052468887757789872218989987875138--------
Q ss_pred CCEEEECCCCEEEEECCCCCCHHHHHCCCCCCCCCCCHHHHHHHHHHHHHHHHHHCCCCC
Q ss_conf 420343264113310258885366530123778999935469999999999998779514
Q 003559 604 KGVEDDLDTFMVYNERRRVTSSAKKKRKRADMSLHQTPDGSFLDILRNAYDILCQCHIKL 663 (811)
Q Consensus 604 ~~~f~~~~r~~~FsPvKn~~~sa~k~~~~~~~~~~~sp~ta~~dl~~~~~~~L~~aG~~v 663 (811)
++++.+++|+.+|+||||+.+++ + .|||+||+.|+|+++++||+.||+++
T Consensus 391 ~~~~~~V~R~~~FsPvKn~~~~~----~------~dsp~ta~~~l~~~~~~~l~~ag~~~ 440 (505)
T 1jv1_A 391 KFVVYEVLREDEFSPLKNADSQN----G------KDNPTTARHALMSLHHCWVLNAGGHF 440 (505)
T ss_dssp SEEEEEECHHHHCCBCCSCTTSS----S------SSSHHHHHHHHHHHHHHHHHHTTCEE
T ss_pred CEEEEEECCCCCEEECCCCCCCC----C------CCCHHHHHHHHHHHHHHHHHHCCCEE
T ss_conf 35899977621244113799988----8------87989999999999999999879866
No 6
>2oeg_A UTP-glucose-1-phosphate uridylyltransferase 2, putative; rossmann-fold, beta-helix, pyrophosphorylase; HET: UPG; 2.30A {Leishmania major} PDB: 2oef_A*
Probab=1.00 E-value=1 Score=650.41 Aligned_cols=414 Identities=16% Similarity=0.068 Sum_probs=349.0
Q ss_pred HHHHHCCCCEEEEEECCCCCCCCCCCCCCCCCEEECCCCCCCCCCCHHHHHHHHHHHHHHHHHHCCCCCCCEEEEECCCC
Q ss_conf 97651049488999158965668999999881342654689998524999999999998867631992211299965999
Q 003559 280 LWGIEGLPELGEIYPLGGSADRLGLVDHETGECLPAAMLPYCGRTLLEGLIRDLQAREFLYFKLYGKQCITPVAIMTSSA 359 (811)
Q Consensus 280 ~~Gle~l~kvavIlLAGGlGTRLG~~~pKgg~~lpv~l~~~sgkTlLql~ie~I~~lq~la~k~~G~~~~IPl~IMTS~~ 359 (811)
.+|+++|+++++|+||||+|||||++.||+ |+||+ +|+||||+++++|++++. .+| +.|||+||||+
T Consensus 67 ~~g~~~l~k~avViLAGGlGTRLg~~~PK~--llpV~----~gk~fLe~~ie~l~~~~~----~~g--~~ip~viMtS~- 133 (505)
T 2oeg_A 67 ECDNAVLQSTVVLKLNGGLGTGMGLCDAKT--LLEVK----DGKTFLDFTALQVQYLRQ----HCS--EHLRFMLMDSF- 133 (505)
T ss_dssp CCCHHHHHTEEEEEEECCCCGGGTCCSCGG--GSEEE----TTEEHHHHHHHHHHHHHH----HTC--TTCEEEEEECH-
T ss_pred HHHHHHHHCCEEEEECCCCCCCCCCCCCCC--CCCCC----CCCCHHHHHHHHHHHHHH----HCC--CCCCEEEEECC-
T ss_conf 678988743659997278624268998874--66569----999399999999999788----608--98678999578-
Q ss_pred CCCHHHHHHHHH-HHCCCCCCCCCEEEEECCCEEEEECCCCCCC-CCCCCCCCCCCCCCCHHHHHHHHCCCHHHHHHCCC
Q ss_conf 984699999999-8079988998539985497104726998030-22799752147998178799983490379997694
Q 003559 360 KNNHERITSLCE-RLRWFGRGQSSFQLFEQPLVPAVDAEDGQWL-VMRPFAPVCKPGGHGAIWKLAHDKGIFKWFHDNGR 437 (811)
Q Consensus 360 ~~Th~~T~~~le-~n~yFGl~~~qV~~F~Q~~vP~l~~~dgkl~-l~~~~~i~~~P~GHGdIy~aL~~sGiLd~l~~~Gi 437 (811)
.||+.|++||+ +++|||+++++|++|+|+++||+++++++++ ++++..++|+|+||||+|++|+++|++++|.++|+
T Consensus 134 -~t~e~t~~~f~~~~~~fGl~~~~I~~f~Q~~~P~~~~~~~~~i~~~~~~~~e~~P~G~Gg~~~aL~~sGlL~~l~~~G~ 212 (505)
T 2oeg_A 134 -NTSASTKSFLKARYPWLYQVFDSEVELMQNQVPKILQDTLEPAAWAENPAYEWAPPGHGDIYTALYGSGKLQELVEQGY 212 (505)
T ss_dssp -HHHHHHHHHHHHHCHHHHTTCCCCCEEECCCEECEETTTCCBCCCTTCGGGGEECCCTTHHHHHHHHTTHHHHHHHTTC
T ss_pred -CCHHHHHHHHHHHHHCCCCCCCCEEEEEECCEEEEECCCCCEEECCCCCCCCCCCCCCHHHHHHHHHCCHHHHHHHCCC
T ss_conf -8789999998534212298834259999767885715887355448897603586995599998776673999986499
Q ss_pred EEEEEEECCCCCCCCCHHHHHHHHHHHHCCCCEEEEEEEECCCCCCCCEEEEEEEC----CCCC--CCCC-EEEEEECCC
Q ss_conf 39999927987433447589986534413995257896203798767238998742----7995--0166-289980355
Q 003559 438 KGATVRQVSNVVAATDLTLLALAGIGLHHGKKLGFASCKRSSGATEGINVLIEKKN----LDGK--WAYG-LSCIEYTEF 510 (811)
Q Consensus 438 kyi~v~qvDN~La~vDP~il~~lG~~~~~~~~~~~~~v~RK~~~~e~vGvL~~~~~----~dGk--~~~~-~~vVEYsEl 510 (811)
+|++|+|+||+.+.+||.| +|++..+++++.+++ ++|..+++++|++|..+. .||+ .+|. ++++||+|+
T Consensus 213 e~i~V~N~DNL~~~~D~~l---lg~~~~~~ad~~~~v-~~k~~~d~~~Gvl~~~~~~~~~~dg~~nvEyn~~~llEyse~ 288 (505)
T 2oeg_A 213 RYMFVSNGDNLGATIDKRV---LAYMEKEKIDFLMEV-CRRTESDKKGGHLARQTVYVKGKDGQPDAEKRVLLLRESAQC 288 (505)
T ss_dssp CEEEEECTTCTTCCCCHHH---HHHHHHHTCSEEEEE-EECCTTCCSSEEEEEEEEEECCSSSCCCEEEEEEEEEEGGGS
T ss_pred CEEEEEECCCCCCCCCHHH---HHHHHHCCCCEEEEE-EEECCCCCCEEEEEEECCCCCCCCCCCCCCCCCEEEEEECCC
T ss_conf 7899997771553138999---999986699589999-994278661269997124443668832333574269996358
Q ss_pred CCCCCCCCCCCCCCCCCCCCC-CEEEEEEEHHHHHHHHCCCCCC--CCCCCCCCCCCCCCEECCCCCCCCCCCCCCCCCH
Q ss_conf 865677898999985555655-1335567388899650235668--8554000248985100699995345852001000
Q 003559 511 DKFGITRGPFSSNGLQADFPA-NTNILYVDLASAELVGSSENER--SLPGMVLNTKKPIVYMDNFGDTHSVPGGRLECTM 587 (811)
Q Consensus 511 ~~~~~~~~~~~dg~l~s~f~~-Ninnl~~~L~~l~~vl~~~~~~--~Lp~hianpKKkIpy~D~~g~~~~~~p~rLE~~M 587 (811)
+++.. + +.++.++|++ |||||||+|+||+++++. +.+ .||+|++. |+|+|.|+ .+++++||||||
T Consensus 289 p~e~~-~----~~~g~~~f~~~Ninn~~~~l~~l~~~~~~-~~~~~~Lp~~vn~--K~i~~~d~----~~~~~~qlE~~~ 356 (505)
T 2oeg_A 289 PKADM-E----SFQDINKYSFFNTNNLWIRLPVLLETMQE-HGGTLPLPVIRNE--KTVDSSNS----ASPKVYQLETAM 356 (505)
T ss_dssp CGGGH-H----HHHCTTTTCEEEEEEEEEEHHHHHHHHHH-TTSSCCCCCEEEE--EESSSSCT----TSCEEEEEECCG
T ss_pred CHHHH-H----CCCCCCCCCEEEEEEEEEEHHHHHHHHHH-HCCCCCCCCEECC--CCCCCCCC----CCCCEEEEEEHH
T ss_conf 85665-4----12671016733787899889999999861-0575677532446--65588778----888768871777
Q ss_pred HHHHHHHCCCCCCCCCCCEEEECCCCEEEEECCCCCCHHHHHCCCCCCCCCCCHHHHHHHHHHHHH--HHHHHCCCCCCC
Q ss_conf 245631002244565542034326411331025888536653012377899993546999999999--999877951476
Q 003559 588 QNIADNFLNTYSSRCYKGVEDDLDTFMVYNERRRVTSSAKKKRKRADMSLHQTPDGSFLDILRNAY--DILCQCHIKLPE 665 (811)
Q Consensus 588 qdi~~~F~~~y~~~~~~~~f~~~~r~~~FsPvKn~~~sa~k~~~~~~~~~~~sp~ta~~dl~~~~~--~~L~~aG~~vp~ 665 (811)
||++..|+ .+++.+++|+ +|+||||. . ++.+++.|+|..++ .|+. +|..+
T Consensus 357 ~d~~~~~~--------~~~~~~V~R~-~FsPvKn~-~---------------dl~~~~sdly~~~~~~~~~~-~~~~~-- 408 (505)
T 2oeg_A 357 GAAIAMFE--------SASAIVVPRS-RFAPVKTC-A---------------DLLALRSDAYVVTDDFRLVL-DDRCH-- 408 (505)
T ss_dssp GGGGGSCT--------TCEEEECCGG-GCCCCSSH-H---------------HHHHHHSTTEEECTTCCEEE-CGGGT--
T ss_pred HHHHHHCC--------CCEEEEECCC-EEECCCCC-C---------------CHHHHHHHHHHHCCCCEEEE-CCCCC--
T ss_conf 77997467--------4349996621-23045687-8---------------99999999986267863997-14304--
Q ss_pred CCCCCCCCCCCCCEEEEECCCCCCCHHHHHHCCCCC--CCCCCCEEEEEECEEEEECEEEEEEEEEEECCCCCCCCCCCC
Q ss_conf 557873323699806985787541199883005999--778986799995639962649998899981268998200489
Q 003559 666 IEGNDKYIDDGPPYLILLHPALGLLWEVTRQKFKGG--SVSKGSELQIEVAEFLWRNVQLDGSLIIVAENVMGSTRIADN 743 (811)
Q Consensus 666 ~~~~~~~~~~gP~~~I~L~P~~~~~~~~~~~k~~~g--sis~~S~L~VeG~~~~~~~v~LdGslvI~a~~~~g~~~~~~~ 743 (811)
..+|. |.|+|.||++|+++++||++| ||+++|+|+|+|+++|++||.|+|+|+|.|.+ .|+
T Consensus 409 --------~~~p~--i~l~p~~~~~~~~~~~r~~~g~psi~~~~~L~v~G~~~f~~~v~l~G~v~i~a~~-~~~------ 471 (505)
T 2oeg_A 409 --------GHPPV--VDLDSAHYKMMNGFEKLVQHGVPSLVECKRVTVKGLVQFGAGNVLTGTVTIENTD-SAS------ 471 (505)
T ss_dssp --------TCCCE--EEECHHHHSSHHHHHHHSTTCCCBCTTEEEEEEESSEECCTTCEEEEEEEEECCS-CSS------
T ss_pred --------CCCCE--EEECHHHCCCHHHHHHHCCCCCCCCCCCCEEEEECCEEECCCCEEEEEEEEEECC-CCC------
T ss_conf --------76985--9989457386999997558999755667679997340883683898789999548-998------
Q ss_pred CCCEEECCCCCCEEEE-EEEEEEECCEEEECCCCCEEC
Q ss_conf 8521111630114899-314786086664318983003
Q 003559 744 GESILQYGYRCGRCKL-NNVKVLNKGIDWDCGDNTYWK 780 (811)
Q Consensus 744 g~~i~~~~~~~g~~~l-~~~~V~N~G~~~~~~~~~~~~ 780 (811)
++.+ .|..|+|+||......|-+|-
T Consensus 472 ------------~~~ip~g~~l~n~~~~~~~~~~~~~~ 497 (505)
T 2oeg_A 472 ------------AFVIPDGAKLNDTTASPQQSTNKMRP 497 (505)
T ss_dssp ------------CEECCTTCEEESCEECC---------
T ss_pred ------------CEEECCCCEEECCEECHHHHCCCCCC
T ss_conf ------------37948998885763042552002464
No 7
>3oc9_A UDP-N-acetylglucosamine pyrophosphorylase; structural genomics, seattle structural genomics center for infectious disease, ssgcid; 1.80A {Entamoeba histolytica}
Probab=1.00 E-value=1 Score=622.59 Aligned_cols=353 Identities=17% Similarity=0.236 Sum_probs=314.7
Q ss_pred HHHHHHHHCCC--CEEEEEECCCCCCCCCCCCCCCCCEEECCCCCCCCCCCHHHHHHHHHHHHHHHHHH-CCCCCCCEEE
Q ss_conf 99997651049--48899915896566899999988134265468999852499999999999886763-1992211299
Q 003559 277 QAALWGIEGLP--ELGEIYPLGGSADRLGLVDHETGECLPAAMLPYCGRTLLEGLIRDLQAREFLYFKL-YGKQCITPVA 353 (811)
Q Consensus 277 ~~e~~Gle~l~--kvavIlLAGGlGTRLG~~~pKgg~~lpv~l~~~sgkTlLql~ie~I~~lq~la~k~-~G~~~~IPl~ 353 (811)
+|++.|+++|+ |+|+|+||||||||||++.||+ |+||+++ +|+||||+++++|+++|+|+.+. +|..+.|||+
T Consensus 22 ~~~~~Gl~~i~~gkvavvlLAGG~GTRLG~~~PK~--~~~Vgl~--~gks~lq~~~e~i~~lq~l~~~~~~~~~~~Ip~~ 97 (405)
T 3oc9_A 22 EHYYRGLELISQGKTALITPAGGQGSRLGFEHPKG--MFVLPFE--IPKSIFQMTSERLLRLQELASEYSHQKNVMIHWF 97 (405)
T ss_dssp HHHHHHHHHHHTTCEEEEEECCSBCTTTTCCSBGG--GCEECSS--SCEEHHHHHHHHHHHHHHHHHHHHCCSCCCCEEE
T ss_pred HHHHHHHHHHHCCCEEEEEECCCCCCCCCCCCCCC--CCCCCCC--CCCCHHHHHHHHHHHHHHHHHHHCCCCCCCCCEE
T ss_conf 99998899872396589996688755466888874--4031688--9984999999999999998765224668997789
Q ss_pred EECCCCCCCHHHHHHHHHHHCCCCCCCCCEEEEECCCEEEEECCCCCCCCCCCCCCCCCCCCCCHHHHHHHHCCCHHHHH
Q ss_conf 96599998469999999980799889985399854971047269980302279975214799817879998349037999
Q 003559 354 IMTSSAKNNHERITSLCERLRWFGRGQSSFQLFEQPLVPAVDAEDGQWLVMRPFAPVCKPGGHGAIWKLAHDKGIFKWFH 433 (811)
Q Consensus 354 IMTS~~~~Th~~T~~~le~n~yFGl~~~qV~~F~Q~~vP~l~~~dgkl~l~~~~~i~~~P~GHGdIy~aL~~sGiLd~l~ 433 (811)
||||+ .||+.|++||++|+|||++++||++|+|+++||++ .+|+++++++++++|+|+||||+|++|+++|+||+|.
T Consensus 98 IMtS~--~t~e~t~~~f~~~~~fGl~~~~i~~f~Q~~~P~i~-~dg~i~l~~~~~i~~~P~GhGgi~~aL~~sG~Ld~l~ 174 (405)
T 3oc9_A 98 LMTNE--ETIEEINNYFKEHQYFGLSSEQIHCFPQGMLPVVD-FNGKILYEKKDKPYMAPNGHGGLFKALKDNGILEFMN 174 (405)
T ss_dssp EEECT--TTHHHHHHHHHHTGGGGSCTTSEEEEECCEEECBC-TTSCBCEEETTEECEEECCGGGHHHHHHHTTHHHHHH
T ss_pred EEECC--CCHHHHHHHHHHCCCCCCCCCCEEEEEECCEEEEE-CCCCEECCCCCCCCCCCCCCHHHHHHHHHCCCHHHHH
T ss_conf 99688--60799999997574358885426999607645792-6887502799860226699739999988778299999
Q ss_pred HCCCEEEEEEECCCCCCCC-CHHHHHHHHHHHHCCCCEEEEEEEECCCCCCCCEEEEEEECCCCCCCCCEEEEEECCCCC
Q ss_conf 7694399999279874334-475899865344139952578962037987672389987427995016628998035586
Q 003559 434 DNGRKGATVRQVSNVVAAT-DLTLLALAGIGLHHGKKLGFASCKRSSGATEGINVLIEKKNLDGKWAYGLSCIEYTEFDK 512 (811)
Q Consensus 434 ~~Gikyi~v~qvDN~La~v-DP~il~~lG~~~~~~~~~~~~~v~RK~~~~e~vGvL~~~~~~dGk~~~~~~vVEYsEl~~ 512 (811)
++|++|++|+|+||+|+++ ||.| +|+++.+++++++++ ++|+.++|++|++|+ .||+ +++|||+|+++
T Consensus 175 ~~Gieyi~v~nvDN~L~~~~Dp~~---lg~~~~~~~d~~~kv-v~k~~~dek~Gvl~~---~dg~----~~vvEysei~~ 243 (405)
T 3oc9_A 175 EKGIKYSVAHNVDNILCKDVDPNM---IGYMDLLQSEICIKI-VKKGFKEEKVGVLVK---EQER----IKVVEYTELTD 243 (405)
T ss_dssp HHTCCEEEEECTTBTTCCSSCHHH---HHHHHHTTCSEEEEE-EECCSTTCSCCEEEE---ETTE----EEEECGGGCCT
T ss_pred HCCCEEEEEEECCCCCCCCCCHHH---HHHHHHCCCCEEEEE-EECCCCCCCCCEEEE---ECCE----EEEEEEEECCH
T ss_conf 659879999968975302379999---999997599879999-987899875244999---8991----68999750787
Q ss_pred CCCCCCCCCCCCCCCCCCC-CEEEEEEEHHHHHHHHCCCCCCCCCCCCCCCCCCCCEECCCCCC---CCCCCCCCCCCHH
Q ss_conf 5677898999985555655-13355673888996502356688554000248985100699995---3458520010002
Q 003559 513 FGITRGPFSSNGLQADFPA-NTNILYVDLASAELVGSSENERSLPGMVLNTKKPIVYMDNFGDT---HSVPGGRLECTMQ 588 (811)
Q Consensus 513 ~~~~~~~~~dg~l~s~f~~-Ninnl~~~L~~l~~vl~~~~~~~Lp~hianpKKkIpy~D~~g~~---~~~~p~rLE~~Mq 588 (811)
+ ++.+..+|.++ |++ ||+||+|+++||++++. ..||+|+|+ |||||+|.+|.. ..++++|||+|++
T Consensus 244 e--~e~~~~~g~l~--fn~~Ni~~h~fs~~fL~~i~~----~~l~~h~a~--Kkip~~d~~g~~~~p~~~ngiklE~fif 313 (405)
T 3oc9_A 244 E--LNKQLSNGEFI--YNCGHISINGYSTSFLEKAAE----YQLPYHIAK--KKVPFVNEQGIVIHPSENNGIKKEIFFF 313 (405)
T ss_dssp T--TTCBCTTSCBS--SCEEEEEEEEEEHHHHHHHTT----CCCCCEEEE--ECCCEECTTSCEECCSSCCEEEEECCGG
T ss_pred H--HHHCCCCCCEE--ECCCEEEEEECCHHHHHHHHH----CCCCCEEEC--CCCCCCCCCCCCCCCCCCCEEEHHHHHH
T ss_conf 7--86128777566--041446745548999998615----068727852--5668607888880468864234387998
Q ss_pred HHHHHHCCCCCCCCCCCEEEECCCCEEEEECCCCCCHHHHHCCCCCCCCCCCHHHHHHHHHHHHHHHHHHCCCCCCCCCC
Q ss_conf 45631002244565542034326411331025888536653012377899993546999999999999877951476557
Q 003559 589 NIADNFLNTYSSRCYKGVEDDLDTFMVYNERRRVTSSAKKKRKRADMSLHQTPDGSFLDILRNAYDILCQCHIKLPEIEG 668 (811)
Q Consensus 589 di~~~F~~~y~~~~~~~~f~~~~r~~~FsPvKn~~~sa~k~~~~~~~~~~~sp~ta~~dl~~~~~~~L~~aG~~vp~~~~ 668 (811)
|++..+. +++..+++|..+|+|+||+++.. .|||+||+.|+++++++|+.++|+.+....
T Consensus 314 d~f~~~~--------~~~~~eV~R~~eF~PlKn~~g~~-----------~dsp~tar~~l~~~~~~wl~~ag~~~~~~~- 373 (405)
T 3oc9_A 314 DVFPLAT--------KVSIFEIQRFIEFSALKNSLNES-----------FDNVNTVKRDWYRLNIYYLKKAGAIVDDSK- 373 (405)
T ss_dssp GGGGGCS--------CEEEEECCHHHHCCBCCCCTTSS-----------SSSHHHHHHHHHHHHHHHHHHTTCEEECSS-
T ss_pred HHHHHCC--------CEEEEEECHHHCCCCEECCCCCC-----------CCCHHHHHHHHHHHHHHHHHHCCCEECCCC-
T ss_conf 8887556--------52899978476235503589989-----------999999999999988999998798874788-
Q ss_pred CCCCCCCCCC
Q ss_conf 8733236998
Q 003559 669 NDKYIDDGPP 678 (811)
Q Consensus 669 ~~~~~~~gP~ 678 (811)
...+++.|.
T Consensus 374 -~~~~Eispl 382 (405)
T 3oc9_A 374 -SPICEISFR 382 (405)
T ss_dssp -CCCEEECTT
T ss_pred -CCCEEECCC
T ss_conf -861896763
No 8
>2i5k_A UTP--glucose-1-phosphate uridylyltransferase; LEFT-handed beta-helix, SGC domain; 3.10A {Saccharomyces cerevisiae}
Probab=1.00 E-value=1 Score=584.48 Aligned_cols=455 Identities=20% Similarity=0.182 Sum_probs=357.3
Q ss_pred HHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHCCCCCC
Q ss_conf 23344699988878765301446788632000014440999999999999873113586606779999999997031112
Q 003559 162 EARSDIKSALYALVEFIDRLDVNGRNSEAKDAVLEIEQVKDLNKLLKTLAEIEQFYDCVGGIIGYQVEVLELLAQSKFER 241 (811)
Q Consensus 162 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~~~~~~k~~Ll~qL~~ld~~y~~~gGl~~Y~~~a~~ll~~s~~~~ 241 (811)
.+.++|+++|.+|..++. + .+++|+.|..|+..++..| .+++.... +.
T Consensus 11 ~~~~~~~~~l~~~~~~~~-----------------~-~~~~~~~~~~~~~~~~~~~-------------~~~~~~~~-~~ 58 (488)
T 2i5k_A 11 VAASQMRNALNKLADSSK-----------------L-DDAARAKFENELDSFFTLF-------------RRYLVEKS-SR 58 (488)
T ss_dssp CHHHHHHHHTTCCC--------------------------CCSCTHHHHHHHHHHH-------------HHHHHHHH-SC
T ss_pred HHHHHHHHHHHHHHHHCC-----------------C-CHHHHHHHHHHHHHHHHHH-------------HHHHHCCC-CC
T ss_conf 999999999999875047-----------------9-8789998999999999999-------------99973444-56
Q ss_pred CCCCCCCCCCCCCCCCCCC-CCCCCCCCCCCHHHHHHHHHHHHHCCCCEEEEEECCCCCCCCCCCCCCCCCEEECCCCCC
Q ss_conf 3565534222122445333-599976568781899999997651049488999158965668999999881342654689
Q 003559 242 KTTKSQHVHESMECQFLEI-HVPSGLDLSQNTEYAAQAALWGIEGLPELGEIYPLGGSADRLGLVDHETGECLPAAMLPY 320 (811)
Q Consensus 242 ~~~~~~~~~~~~~~~~~~~-~vP~g~~l~~~~~~~~~~e~~Gle~l~kvavIlLAGGlGTRLG~~~pKgg~~lpv~l~~~ 320 (811)
+. .+++.+ ++|++...++.+.. .+ ..|++++.++++|+||||+|||||++.||+ ++||.
T Consensus 59 ~~-----------~~~~~i~p~~~~~~~~~~~~~--~~-~~~~~~~~k~avViLAGG~GTRmgs~~PK~--l~~V~---- 118 (488)
T 2i5k_A 59 TT-----------LEWDKIKSPNPDEVVKYEIIS--QQ-PENVSNLSKLAVLKLNGGLGTSMGCVGPKS--VIEVR---- 118 (488)
T ss_dssp CS-----------CCGGGEECCCTTTEEEHHHHH--SS-CCCSTTGGGEEEEEECCCBSGGGTCCSBST--TSCCB----
T ss_pred CC-----------CCCCCCCCCCHHCCCCHHHCC--CC-HHHHHHCCCCEEEEECCCCCCCCCCCCCCC--CCCCC----
T ss_conf 88-----------750034248732065733336--45-124653477259998389766578898831--20447----
Q ss_pred CCCCCHHHHHHHHHHHHHHHHHHCCCCCCCEEEEECCCCCCCHHHHHHHHHHHCCCCCCCCCEEEEECCCEEEEECCCCC
Q ss_conf 99852499999999999886763199221129996599998469999999980799889985399854971047269980
Q 003559 321 CGRTLLEGLIRDLQAREFLYFKLYGKQCITPVAIMTSSAKNNHERITSLCERLRWFGRGQSSFQLFEQPLVPAVDAEDGQ 400 (811)
Q Consensus 321 sgkTlLql~ie~I~~lq~la~k~~G~~~~IPl~IMTS~~~~Th~~T~~~le~n~yFGl~~~qV~~F~Q~~vP~l~~~dgk 400 (811)
+|+||||++++++++++ ..+| +.|||+||||+ +|++.|+++|+++++||+ +|.+|.|+++||++ .+++
T Consensus 119 ~gk~~Le~~i~~i~~l~----~~~G--~~Ip~vImts~--~t~e~t~~~~~~~~~fg~---~i~~f~Q~~~P~i~-~d~~ 186 (488)
T 2i5k_A 119 EGNTFLDLSVRQIEYLN----RQYD--SDVPLLLMNSF--NTDKDTEHLIKKYSANRI---RIRSFNQSRFPRVY-KDSL 186 (488)
T ss_dssp TTBCHHHHHHHHHHHHH----HHHT--CCCEEEEECCT--TTHHHHHHHHGGGCSSSC---EEEEECCCCEECEE-TTTC
T ss_pred CCCCHHHHHHHHHHHHH----HHCC--CCCCEEEEECC--CCHHHHHHHHHHCCCCCC---EEEEEEECCCCEEC-CCCC
T ss_conf 99969999999999867----8609--98648999789--877999999985045685---69999807610283-0453
Q ss_pred CCCCCC---CCCCCCCCCCCHHHHHHHHCCCHHHHHHCCCEEEEEEECCCCCCCC-CHHHHHHHHHHHHCCCCEEEEEEE
Q ss_conf 302279---9752147998178799983490379997694399999279874334-475899865344139952578962
Q 003559 401 WLVMRP---FAPVCKPGGHGAIWKLAHDKGIFKWFHDNGRKGATVRQVSNVVAAT-DLTLLALAGIGLHHGKKLGFASCK 476 (811)
Q Consensus 401 l~l~~~---~~i~~~P~GHGdIy~aL~~sGiLd~l~~~Gikyi~v~qvDN~La~v-DP~il~~lG~~~~~~~~~~~~~v~ 476 (811)
++++.+ ++++|+|+||||+|.+|+.+|++++|.++|++|++|+|+|| |... ||.+ +|++..+++++.+++ +
T Consensus 187 ~~l~~~~~~~~~~~~P~GtGga~~~L~~sg~l~~l~~~g~~~v~V~ngDn-L~~~~d~~~---L~~~~~~~a~~t~~v-~ 261 (488)
T 2i5k_A 187 LPVPTEYDSPLDAWYPPGHGDLFESLHVSGELDALIAQGREILFVSNGDN-LGATVDLKI---LNHMIETGAEYIMEL-T 261 (488)
T ss_dssp CBSCSSSSSCTTSEECCCGGGHHHHHHHHTHHHHHHHTTCCEEEEECTTB-SSCCCCHHH---HHHHHHSCCSEEEEE-E
T ss_pred EEECCCCCCCCEEEECCCCCHHHHHHHHCCCHHHHHHCCCCEEEEEECCC-CCCCCCHHH---HHHHHHCCCCEEEEE-E
T ss_conf 43035788775545069972665525540708899746997799996884-777146999---999985699399999-9
Q ss_pred ECCCCCCCCEEEEEEECCCCCCCCCEEEEEECCCCCCCCCCCCCCCCCCCCCCCC-CEEEEEEEHHHHHHHHCCCCCCCC
Q ss_conf 0379876723899874279950166289980355865677898999985555655-133556738889965023566885
Q 003559 477 RSSGATEGINVLIEKKNLDGKWAYGLSCIEYTEFDKFGITRGPFSSNGLQADFPA-NTNILYVDLASAELVGSSENERSL 555 (811)
Q Consensus 477 RK~~~~e~vGvL~~~~~~dGk~~~~~~vVEYsEl~~~~~~~~~~~dg~l~s~f~~-Ninnl~~~L~~l~~vl~~~~~~~L 555 (811)
+++.+++++|++|+ .+|+ +++|||+|++++...+. ++. ..|+. ||||+||++++|+++++. ....|
T Consensus 262 ~~~~p~~~yG~Iv~---~dG~----~~iVE~~e~~~e~~~~~---~~~--~~~~~~Ntgi~~f~~~~L~~~l~~-~~~~l 328 (488)
T 2i5k_A 262 DKTRADVKGGTLIS---YDGQ----VRLLEVAQVPKEHIDEF---KNI--RKFTNFNTNNLWINLKAVKRLIES-SNLEM 328 (488)
T ss_dssp ECCGGGSSSCEEEE---ETTE----EEEECGGGSCTTSHHHH---TCT--TTCCEEEEEEEEEEHHHHHHHHHT-TCCCC
T ss_pred EECCCCCCEEEEEE---ECCC----EEEEEECCCCHHHHHHC---CCC--CCCCEEEEEEEEEEHHHHHHHHHH-CCCCC
T ss_conf 93699886659999---7894----88998424999998401---356--566778899999839999999862-56887
Q ss_pred CCCCCCCCCCCCEECCCCCCCCCCCCCCCCCHHHHHHHHCCCCCCCCCCCEEEECCCCEEEEECCCCCCHHHHHCCCCCC
Q ss_conf 54000248985100699995345852001000245631002244565542034326411331025888536653012377
Q 003559 556 PGMVLNTKKPIVYMDNFGDTHSVPGGRLECTMQNIADNFLNTYSSRCYKGVEDDLDTFMVYNERRRVTSSAKKKRKRADM 635 (811)
Q Consensus 556 p~hianpKKkIpy~D~~g~~~~~~p~rLE~~Mqdi~~~F~~~y~~~~~~~~f~~~~r~~~FsPvKn~~~sa~k~~~~~~~ 635 (811)
|+|++. |+||| |.++ .+++||||||||++.+|++ .+..+++|+ +|+||||+. ++
T Consensus 329 p~~v~~--K~i~~-~~~~----~~~~qlE~~~~d~~~~~~~--------~~~~~V~R~-~F~PvKn~~-~l--------- 382 (488)
T 2i5k_A 329 EIIPNQ--KTITR-DGHE----INVLQLETACGAAIRHFDG--------AHGVVVPRS-RFLPVKTCS-DL--------- 382 (488)
T ss_dssp CCBCCE--ECCCC----------CEECCBCCGGGGGGGSSS--------CEEEEECGG-GCCBCCSHH-HH---------
T ss_pred CCEECC--CCCCC-CCCC----CCEEEEEEHHHHHHHHCCC--------CEEEEECCC-CCCCCCCCC-CH---------
T ss_conf 530247--52267-8898----7168763323447763467--------359996566-410366876-57---------
Q ss_pred CCCCCHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCEEEEECCCCCCCHHHHHHCCCC-CCCCCCCEEEEEEC
Q ss_conf 89999354699999999999987795147655787332369980698578754119988300599-97789867999956
Q 003559 636 SLHQTPDGSFLDILRNAYDILCQCHIKLPEIEGNDKYIDDGPPYLILLHPALGLLWEVTRQKFKG-GSVSKGSELQIEVA 714 (811)
Q Consensus 636 ~~~~sp~ta~~dl~~~~~~~L~~aG~~vp~~~~~~~~~~~gP~~~I~L~P~~~~~~~~~~~k~~~-gsis~~S~L~VeG~ 714 (811)
.+++.+ +|...+|..+..+ ..++..| +|.|++. +..+.+|++||++ ++|.++++|+|+|+
T Consensus 383 ------l~~~~~------~~~~~~g~~~~~~----~~~e~~P--~v~~~~~-~~~~~~~~~rf~~~p~i~~~~~l~v~Gd 443 (488)
T 2i5k_A 383 ------LLVKSD------LFRLEHGSLKLDP----SRFGPNP--LIKLGSH-FKKVSGFNARIPHIPKIVELDHLTITGN 443 (488)
T ss_dssp ------HHHTST------TEEEETTEEEECT----TCCSSCC--EEEECGG-GSSHHHHHHHCSSCCBCTTEEEEEEESS
T ss_pred ------HHHHHH------HHHHHCCCEEECC----CCCCCCC--EEEECCC-CCCHHHHHHHCCCCCCCCCCCEEEEEEE
T ss_conf ------899999------9998469676467----7577788--6997786-2025357765589865232555899812
Q ss_pred EEEEECEEEEEEEEEEECCCCCCCCCCCCCC
Q ss_conf 3996264999889998126899820048985
Q 003559 715 EFLWRNVQLDGSLIIVAENVMGSTRIADNGE 745 (811)
Q Consensus 715 ~~~~~~v~LdGslvI~a~~~~g~~~~~~~g~ 745 (811)
++|++||.|+|+|+|.|. .|.....|+|.
T Consensus 444 v~fg~~v~l~G~v~i~a~--~~~~~~ip~g~ 472 (488)
T 2i5k_A 444 VFLGKDVTLRGTVIIVCS--DGHKIDIPNGS 472 (488)
T ss_dssp EEECTTCEEEEEEEEECC--TTCCEEECTTC
T ss_pred EEECCCCEEEEEEEEECC--CCCEEEECCCC
T ss_conf 698578589878999858--99847708998
No 9
>2icy_A Probable UTP-glucose-1-phosphate uridylyltransferase 2; AT3G03250, UDP, putative UDP-glucose pyrophosphorylase; HET: UPG U5P; 1.64A {Arabidopsis thaliana} SCOP: b.81.1.4 c.68.1.5 PDB: 2icx_A* 1z90_A 2q4j_A
Probab=1.00 E-value=1 Score=565.96 Aligned_cols=399 Identities=18% Similarity=0.193 Sum_probs=326.5
Q ss_pred CCCCCCCCCCCHHHH-HHHHHHHHHCCCCEEEEEECCCCCCCCCCCCCCCCCEEECCCCCCCCCCCHHHHHHHHHHHHHH
Q ss_conf 599976568781899-9999976510494889991589656689999998813426546899985249999999999988
Q 003559 261 HVPSGLDLSQNTEYA-AQAALWGIEGLPELGEIYPLGGSADRLGLVDHETGECLPAAMLPYCGRTLLEGLIRDLQAREFL 339 (811)
Q Consensus 261 ~vP~g~~l~~~~~~~-~~~e~~Gle~l~kvavIlLAGGlGTRLG~~~pKgg~~lpv~l~~~sgkTlLql~ie~I~~lq~l 339 (811)
++|++...++.+... ..+++.|++++.++++|+||||+|||||++.||+ |+|+. +|+||||+++++|++++
T Consensus 51 p~~~~~~~~~~~~~~~~~~~~~g~~~l~k~~vviLAGGlGTRLg~~~PK~--llpv~----~gkp~Le~~i~~l~~~~-- 122 (469)
T 2icy_A 51 TPTDEIVVPYEKMTPVSQDVAETKNLLDKLVVLKLNGGLGTTMGCTGPKS--VIEVR----DGLTFLDLIVIQIENLN-- 122 (469)
T ss_dssp CCCTTTEEEGGGSCCCCSCHHHHHHHHTTEEEEEEECCBSGGGTCCSBGG--GSEEE----TTEEHHHHHHHHHHHHH--
T ss_pred CCCCCCCCCHHHCCCCHHHHHHHHHHHCCCEEEEECCCCCCCCCCCCCCC--CCCCC----CCCCHHHHHHHHHHHHH--
T ss_conf 69802455743335450357888875315359998378656388788742--35167----99879999999999978--
Q ss_pred HHHHCCCCCCCEEEEECCCCCCCHHHHHHHHHHHCCCCCCCCCEEEEECCCEEEEECCCCCCCCCCC---CCCCCCCCCC
Q ss_conf 6763199221129996599998469999999980799889985399854971047269980302279---9752147998
Q 003559 340 YFKLYGKQCITPVAIMTSSAKNNHERITSLCERLRWFGRGQSSFQLFEQPLVPAVDAEDGQWLVMRP---FAPVCKPGGH 416 (811)
Q Consensus 340 a~k~~G~~~~IPl~IMTS~~~~Th~~T~~~le~n~yFGl~~~qV~~F~Q~~vP~l~~~dgkl~l~~~---~~i~~~P~GH 416 (811)
+++| +.|||+||||+ .||+.|++||++|+|||+ +|++|+|+++||++ .+++++++.+ +.++|+|+||
T Consensus 123 --~~~G--~~ip~vimts~--~t~e~t~~~f~~~~~fG~---~I~~f~Q~~~P~i~-~e~~~~l~~~~~~~~~e~~P~Gt 192 (469)
T 2icy_A 123 --NKYG--CKVPLVLMNSF--NTHDDTHKIVEKYTNSNV---DIHTFNQSKYPRVV-ADEFVPWPSKGKTDKEGWYPPGH 192 (469)
T ss_dssp --HHHS--CCCCEEEEECT--TTHHHHHHHHGGGTTSSS---CEEEEECCCEECEE-TTTTEEGGGGTCCSGGGEECCCG
T ss_pred --HHCC--CCCCEEEEECC--CCHHHHHHHHHHCCCCCC---EEEEEEECCEEEEC-CCCCCCCCCCCCCCCCCCCCCCC
T ss_conf --8619--97658999478--888999999975323796---39999852414472-46675556778876425785984
Q ss_pred CHHHHHHHHCCCHHHHHHCCCEEEEEEECCCCCCCCCHHHHHHHHHHHHCCCCEEEEEEEECCCCCCCCEEEEEEECCCC
Q ss_conf 17879998349037999769439999927987433447589986534413995257896203798767238998742799
Q 003559 417 GAIWKLAHDKGIFKWFHDNGRKGATVRQVSNVVAATDLTLLALAGIGLHHGKKLGFASCKRSSGATEGINVLIEKKNLDG 496 (811)
Q Consensus 417 GdIy~aL~~sGiLd~l~~~Gikyi~v~qvDN~La~vDP~il~~lG~~~~~~~~~~~~~v~RK~~~~e~vGvL~~~~~~dG 496 (811)
||+|++|+++|++++|.++|++|++|+|+||+.+..||.| +|++..+++++.+++ ++|+.+++++|++|. .||
T Consensus 193 GG~~~~L~~sGll~~l~~~G~e~~~V~n~DnL~~~~d~~l---l~~~~~~~a~~t~~v-~~k~~~~~~~Gvl~~---~dg 265 (469)
T 2icy_A 193 GDVFPALMNSGKLDTFLSQGKEYVFVANSDNLGAIVDLTI---LKHLIQNKNEYCMEV-TPKTLADVKGGTLIS---YEG 265 (469)
T ss_dssp GGHHHHHHHHSHHHHHHTTTCCEEEEEETTBTTCCCCHHH---HHHHHHHTCSEEEEE-EECCTTCCSSCEEEE---ETT
T ss_pred HHHHHHHHHCCCHHHHHHCCCCEEEEEECCCCCCCCCHHH---HHHHHHCCCCEEEEE-EEECCCCCCEEEEEE---ECC
T ss_conf 6999987866749999865997899997885775147999---999987399725799-996168886028999---899
Q ss_pred CCCCCEEEEEECCCCCCCCCCCCCCCCCCCCCCCC-CEEEEEEEHHHHHHHHCCCCCCCCCCCCCCCCCCCCEECCCCCC
Q ss_conf 50166289980355865677898999985555655-13355673888996502356688554000248985100699995
Q 003559 497 KWAYGLSCIEYTEFDKFGITRGPFSSNGLQADFPA-NTNILYVDLASAELVGSSENERSLPGMVLNTKKPIVYMDNFGDT 575 (811)
Q Consensus 497 k~~~~~~vVEYsEl~~~~~~~~~~~dg~l~s~f~~-Ninnl~~~L~~l~~vl~~~~~~~Lp~hianpKKkIpy~D~~g~~ 575 (811)
+ ++++||+|++++...+. .+. ..|+. |||||||++++|+++.+. ....||+|+ |+| ++| +
T Consensus 266 ~----~~vvE~~e~p~~~~~e~--k~~---~~~~~~N~g~y~~~~~~L~~i~~~-~~~~lp~~v-~~K----~id--~-- 326 (469)
T 2icy_A 266 K----VQLLEIAQVPDEHVNEF--KSI---EKFKIFNTNNLWVNLKAIKKLVEA-DALKMEIIP-NPK----EVD--G-- 326 (469)
T ss_dssp E----EEEECGGGSCGGGHHHH--HSS---SSCCEEEEEEEEEEHHHHHHHHHT-TCCCCCCBC-CEE----EET--T--
T ss_pred E----EEEEEEECCCHHHHHHH--CCC---CCCCEEEEEEEEECHHHHHHHHHC-CCCCCHHHC-CCE----ECC--C--
T ss_conf 7----99999851682255442--034---446654689999819999998753-667862110-542----138--9--
Q ss_pred CCCCCCCCCCCHHHHHHHHCCCCCCCCCCCEEEECCCCEEEEECCCCCCHHHHHCCCCCCCCCCCHHHHHHHHHHHHHH-
Q ss_conf 3458520010002456310022445655420343264113310258885366530123778999935469999999999-
Q 003559 576 HSVPGGRLECTMQNIADNFLNTYSSRCYKGVEDDLDTFMVYNERRRVTSSAKKKRKRADMSLHQTPDGSFLDILRNAYD- 654 (811)
Q Consensus 576 ~~~~p~rLE~~Mqdi~~~F~~~y~~~~~~~~f~~~~r~~~FsPvKn~~~sa~k~~~~~~~~~~~sp~ta~~dl~~~~~~- 654 (811)
++++|||++|||++..|. .+...+++|. +|+||||.. |++..+++
T Consensus 327 --~~~~klE~~~~D~~~~~~--------~~~~~~V~R~-~F~PvKn~~-----------------------dll~~~s~l 372 (469)
T 2icy_A 327 --VKVLQLETAAGAAIRFFD--------NAIGVNVPRS-RFLPVKASS-----------------------DLLLVQSDL 372 (469)
T ss_dssp --EEEECCBCCGGGGGGGST--------TCEEEECCGG-GCCBCCSHH-----------------------HHHHHHSTT
T ss_pred --CCEEEEHHHHHHHHHHCC--------CEEEEEECHH-HCCCCCCHH-----------------------HHHHHHHHH
T ss_conf --866754476678997368--------7089994656-707689878-----------------------899999989
Q ss_pred HHHHCCCCCCCCCCCCCCCCCCCCEEEEECCCCCCCHHHHHHCCCC-CCCCCCCEEEEEECEEEEECEEEEEEEEEEECC
Q ss_conf 9987795147655787332369980698578754119988300599-977898679999563996264999889998126
Q 003559 655 ILCQCHIKLPEIEGNDKYIDDGPPYLILLHPALGLLWEVTRQKFKG-GSVSKGSELQIEVAEFLWRNVQLDGSLIIVAEN 733 (811)
Q Consensus 655 ~L~~aG~~vp~~~~~~~~~~~gP~~~I~L~P~~~~~~~~~~~k~~~-gsis~~S~L~VeG~~~~~~~v~LdGslvI~a~~ 733 (811)
|...+|..+.. .....+..| +|.|++. +.++++|.+||++ +||.++++|+|+|+++|++||.|+|+|+|.|.
T Consensus 373 ~~~~~g~~~~~---~~~~~~~~P--~v~l~~~-~~~v~~f~~rf~~~p~~~~~~~l~v~gdv~fg~~v~l~G~v~i~~~- 445 (469)
T 2icy_A 373 YTLVDGFVTRN---KARTNPSNP--SIELGPE-FKKVATFLSRFKSIPSIVELDSLKVSGDVWFGSSIVLKGKVTVAAK- 445 (469)
T ss_dssp EEEETTEEEEC---TTCCSSSCC--EEEECGG-GCSHHHHHHTBSSCCBCTTEEEEEEESEEEECSSCEEEEEEEEECC-
T ss_pred HHHHCCCEEEC---CCCCCCCCC--EEECCHH-HHHHHHHHHHCCCCCCCCCCCEEEEEEEEEECCCCEEEEEEEEECC-
T ss_conf 99856968736---765579997--3771753-6529999874699866012774899730597698589889999868-
Q ss_pred CCCCCCCCCCCC
Q ss_conf 899820048985
Q 003559 734 VMGSTRIADNGE 745 (811)
Q Consensus 734 ~~g~~~~~~~g~ 745 (811)
.|.....|+|.
T Consensus 446 -~~~~~~ip~g~ 456 (469)
T 2icy_A 446 -SGVKLEIPDRA 456 (469)
T ss_dssp -TTCEEEECTTC
T ss_pred -CCCEEECCCCC
T ss_conf -99824329997
No 10
>3st8_A Bifunctional protein GLMU; acetyltransferase, pyrophosphorylase, rossmann fold, LEFT-handed-beta-helix, cell shape; HET: COA GP1 UD1; 1.98A {Mycobacterium tuberculosis} PDB: 3spt_A* 3foq_A 3dk5_A 3d8v_A 3d98_A* 3dj4_A 2qkx_A*
Probab=1.00 E-value=1 Score=72.08 Aligned_cols=192 Identities=15% Similarity=0.162 Sum_probs=126.8
Q ss_pred CCEEEEEECCCCCCCCCCCCCCCCCEEECCCCCCCCCCCHHHHHHHHHHHHHHHHHHCCCCCCCEEEEECCCCCCCHHHH
Q ss_conf 94889991589656689999998813426546899985249999999999988676319922112999659999846999
Q 003559 287 PELGEIYPLGGSADRLGLVDHETGECLPAAMLPYCGRTLLEGLIRDLQAREFLYFKLYGKQCITPVAIMTSSAKNNHERI 366 (811)
Q Consensus 287 ~kvavIlLAGGlGTRLG~~~pKgg~~lpv~l~~~sgkTlLql~ie~I~~lq~la~k~~G~~~~IPl~IMTS~~~~Th~~T 366 (811)
..+++|+||||.||||...-||- ++|+ .||+++++.++.+... | .--++|.++. -.+..
T Consensus 11 ~~~~vvILAaG~GtRm~~~~pK~--l~pv-----~gkp~i~~~l~~~~~~--------g---~~~i~vv~~~---~~~~i 69 (501)
T 3st8_A 11 GDTAVLVLAAGPGTRMRSDTPKV--LHTL-----AGRSMLSHVLHAIAKL--------A---PQRLIVVLGH---DHQRI 69 (501)
T ss_dssp -CEEEEEEECSCCGGGCCSSCGG--GCEE-----TTEEHHHHHHHHHHHH--------C---CSEEEEEECT---THHHH
T ss_pred CCCEEEEECCCCCCCCCCCCCHH--HEEE-----CCHHHHHHHHHHHHHC--------C---CCEEEEEECC---CHHHH
T ss_conf 98669997874865679899778--7678-----8810999999999867--------9---9879999488---88999
Q ss_pred HHHHHH-HCCCCCCCCCEEEEECCCEEEEECCCCCCCCCCCCCCCCCCCCCCH-HHHHHHHCCCHHHHHHCCCEEEEEEE
Q ss_conf 999998-0799889985399854971047269980302279975214799817-87999834903799976943999992
Q 003559 367 TSLCER-LRWFGRGQSSFQLFEQPLVPAVDAEDGQWLVMRPFAPVCKPGGHGA-IWKLAHDKGIFKWFHDNGRKGATVRQ 444 (811)
Q Consensus 367 ~~~le~-n~yFGl~~~qV~~F~Q~~vP~l~~~dgkl~l~~~~~i~~~P~GHGd-Iy~aL~~sGiLd~l~~~Gikyi~v~q 444 (811)
.++|.+ .+.||. ++.+..|. .|-|-|+ |+.++ +.+.+.-...+.+.+
T Consensus 70 ~~~~~~~~~~~~~---~i~~~~q~----------------------~~lGTa~Av~~a~------~~l~~~~~~~~lvl~ 118 (501)
T 3st8_A 70 APLVGELADTLGR---TIDVALQD----------------------RPLGTGHAVLCGL------SALPDDYAGNVVVTS 118 (501)
T ss_dssp HHHHHHHHHHHTS---CCEEEECS----------------------SCCCHHHHHHHHH------TTSCTTCCSEEEEEE
T ss_pred HHHHHHHHHHCCC---CEEEEECC----------------------CCCCCHHHHHHHH------HHHCCCCCCCEEEEC
T ss_conf 9999877876398---17999838----------------------9897599999999------872314566323203
Q ss_pred CCCCCCCCCHHHHHHHHHHHHCCCCEEEEEEEECCCCCCCCEEEEEEECCCCCCCCCEEEEEECCCCCCCCCCCCCCCCC
Q ss_conf 79874334475899865344139952578962037987672389987427995016628998035586567789899998
Q 003559 445 VSNVVAATDLTLLALAGIGLHHGKKLGFASCKRSSGATEGINVLIEKKNLDGKWAYGLSCIEYTEFDKFGITRGPFSSNG 524 (811)
Q Consensus 445 vDN~La~vDP~il~~lG~~~~~~~~~~~~~v~RK~~~~e~vGvL~~~~~~dGk~~~~~~vVEYsEl~~~~~~~~~~~dg~ 524 (811)
.|.++...|. +..++......+.++.+.+ .+...|. +-|++.+ ..+|+ ....+|.-+.++...
T Consensus 119 gd~~l~~~~~-~~~l~~~h~~~~~~~ti~~-~~~~dp~-~yG~i~~--~~~g~---v~~ivEk~~~~~~~~--------- 181 (501)
T 3st8_A 119 GDTPLLDADT-LADLIATHRAVSAAVTVLT-TTLDDPF-GYGRILR--TQDHE---VMAIVEQTDATPSQR--------- 181 (501)
T ss_dssp TTCTTCCHHH-HHHHHHHHHHTTCSEEEEE-EECSCCT-TSCEEEE--CTTCC---EEEEECGGGCCHHHH---------
T ss_pred CCCEEECHHH-HHHHHHHHHHCCCCCEEEE-ECCCCCH-HCCCCCC--CCCEE---EEEECCCCCCCHHHC---------
T ss_conf 7602336789-9999999763255415752-0257951-0165322--33125---775112257984240---------
Q ss_pred CCCCCCCCEEEEEEEHHHHHHHHCC
Q ss_conf 5555655133556738889965023
Q 003559 525 LQADFPANTNILYVDLASAELVGSS 549 (811)
Q Consensus 525 l~s~f~~Ninnl~~~L~~l~~vl~~ 549 (811)
. ..-.|+-.++|+-+.+++.+..
T Consensus 182 -~-i~~in~Giy~f~~~~l~~~l~~ 204 (501)
T 3st8_A 182 -E-IREVNAGVYAFDIAALRSALSR 204 (501)
T ss_dssp -H-CCEEEEEEEEEEHHHHHHHHTT
T ss_pred -C-CEEEECEEEEECCHHHHHHHHH
T ss_conf -2-1155010344041347776653
Done!