Your job contains 1 sequence.
>003561
MYVVKRDGRQEAVHFDKITARLKKLSYGLSTEHCDPVLVSQKVCAGVYKGVTTSQLDELA
AETAAAMTTNHPDYASLAARIAVSNLHKNTKKSFSETIKDMYNHYNERSGLKAPLIADDI
YEIIMKNAACLDSEIIYDRDFDYDYFGFKTLERSYLLKVQGKVVERPQHMLMRVSIGIHK
DDIDSAIKTYHMMSQRWFTHASPTLFNAGTPRPQLSSCFLVCMKDDSIEGIYETLKECAV
ISKSAGGIGVSVHNIRATGSYIRGTNGTSNGIVPMLRVFNDTARYVDQGGGKRKGAFAVY
LEPWHADIFEFLNLKKNHGKEEHRARDLFYALWVPDLFMERVQTNGQWSLFCPNEASGLA
DCWGAEFEKLYTHYEREGKAKKVVQAQNLWFEILTSQIETGTPYMLFKDTCNRKSNQQNL
GTIKSSNLCTEIIEYTSPTETAVCNLASIALPRFVREKDVPVESHPSRIVGSRGSKNRFF
DFEKLAEVTAIVTENLNKIIDVNYYPVETARRSNLRHRPIGIGVQGLADTFILLGMAFES
PEAQQLNKDIFETIYYHALKTSSEIAAKEGPYETYHNSPVSKGILQPDMWNVIPSDRWDW
GVLRDMISKNGVRNSLLVAPMPTASTSQILGNNECFEPYTSNIYSRRVLSGEFVVVNKHL
LHDLTEMGIWSPTIKNKIIYDDGSVQKIPEIPEELKMIYKTVWEIKQMTLVDMAVDRGCY
IDQSQSLNIHMDQPNFKKVTSLHFRTWSRGLKTGMYYLRSRAAADAIKFTVDTSVFKEKP
EKPELVVDDETKMAQVVCSLTNREECMACGS
BLASTP 2.0MP-WashU [04-May-2006] [linux26-i686-ILP32F64 2006-05-09T11:47:08]
Copyright (C) 1996-2006 Washington University, Saint Louis, Missouri USA.
All Rights Reserved.
Reference: Gish, W. (1996-2006) http://blast.wustl.edu
Query= 003561
(811 letters)
Database: go_20130330-seqdb.fasta
368,745 sequences; 169,044,731 total letters.
Searching....10....20....30....40....50....60....70....80....90....100% done
Smallest
Sum
High Probability
Sequences producing High-scoring Segment Pairs: Score P(N) N
TAIR|locus:2052469 - symbol:RNR1 "ribonucleotide reductas... 3679 0. 1
RGD|1592569 - symbol:Rrm1 "ribonucleotide reductase M1" s... 1654 7.8e-291 2
MGI|MGI:98180 - symbol:Rrm1 "ribonucleotide reductase M1"... 1656 1.0e-290 2
UNIPROTKB|P23921 - symbol:RRM1 "Ribonucleoside-diphosphat... 1656 8.9e-290 2
UNIPROTKB|F1MSF1 - symbol:RRM1 "Ribonucleoside-diphosphat... 1651 3.0e-289 2
UNIPROTKB|E2R8P1 - symbol:RRM1 "Ribonucleoside-diphosphat... 1648 1.7e-288 2
UNIPROTKB|Q5R919 - symbol:RRM1 "Ribonucleoside-diphosphat... 1646 1.7e-288 2
ZFIN|ZDB-GENE-990415-247 - symbol:rrm1 "ribonucleotide re... 1642 9.4e-286 2
POMBASE|SPAC1F7.05 - symbol:cdc22 "ribonucleoside reducta... 1646 3.5e-280 3
ASPGD|ASPL0000074083 - symbol:AN4380 species:162425 "Emer... 1631 5.2e-277 3
FB|FBgn0011703 - symbol:RnrL "Ribonucleoside diphosphate ... 1610 1.5e-276 2
UNIPROTKB|Q9UW15 - symbol:rnr-1 "Ribonucleoside-diphospha... 1642 3.1e-276 2
CGD|CAL0001524 - symbol:RNR1 species:5476 "Candida albica... 2581 3.7e-271 2
UNIPROTKB|Q5A0N3 - symbol:RNR1 "Ribonucleoside-diphosphat... 2581 3.7e-271 2
DICTYBASE|DDB_G0284071 - symbol:rnrA "ribonucleoside-diph... 2596 6.0e-270 1
WB|WBGene00004391 - symbol:rnr-1 species:6239 "Caenorhabd... 1571 8.9e-270 2
UNIPROTKB|Q03604 - symbol:rnr-1 "Ribonucleoside-diphospha... 1571 8.9e-270 2
SGD|S000000872 - symbol:RNR1 "Major isoform of large subu... 2569 1.4e-269 2
UNIPROTKB|E1C4Q0 - symbol:E1C4Q0 "Ribonucleoside-diphosph... 1651 3.9e-267 2
SGD|S000001328 - symbol:RNR3 "Minor isoform of the large ... 2561 3.0e-266 1
UNIPROTKB|P50648 - symbol:RNR1 "Ribonucleoside-diphosphat... 1537 3.2e-263 2
UNIPROTKB|E9PD78 - symbol:RRM1 "Ribonucleoside-diphosphat... 1366 4.3e-259 2
UNIPROTKB|O61065 - symbol:RNR1 "Ribonucleoside-diphosphat... 1467 3.9e-258 2
CGD|CAL0002354 - symbol:RNR3 species:5476 "Candida albica... 1239 7.0e-256 3
UNIPROTKB|Q59M54 - symbol:RNR3 "Ribonucleoside-diphosphat... 1239 7.0e-256 3
UNIPROTKB|P50647 - symbol:RNR1 "Ribonucleoside-diphosphat... 1480 1.6e-252 2
UNIPROTKB|O15909 - symbol:RNR1 "Ribonucleoside-diphosphat... 2285 5.4e-237 1
UNIPROTKB|F1SUZ5 - symbol:F1SUZ5 "Uncharacterized protein... 1154 8.1e-219 3
UNIPROTKB|E9PL69 - symbol:RRM1 "Ribonucleoside-diphosphat... 1151 2.1e-217 2
UNIPROTKB|Q8SR37 - symbol:ECU10_0920 "Ribonucleoside-diph... 1077 8.1e-203 2
UNIPROTKB|F5H861 - symbol:RRM1 "Ribonucleoside-diphosphat... 1151 2.0e-162 2
TIGR_CMR|CBU_1553 - symbol:CBU_1553 "ribonucleoside-dipho... 1236 1.0e-128 2
UNIPROTKB|Q886B0 - symbol:nrdA "Ribonucleoside-diphosphat... 1227 1.3e-126 2
UNIPROTKB|Q48FF6 - symbol:nrdA "Ribonucleoside-diphosphat... 1226 1.7e-126 2
UNIPROTKB|Q607W9 - symbol:nrdA "Ribonucleoside-diphosphat... 1206 1.2e-122 1
UNIPROTKB|Q5HXD4 - symbol:nrdA "Ribonucleoside-diphosphat... 674 1.6e-93 3
TIGR_CMR|CJE_0024 - symbol:CJE_0024 "ribonucleoside-dipho... 674 1.6e-93 3
UNIPROTKB|Q71XL1 - symbol:nrdA "Ribonucleoside-diphosphat... 707 5.2e-77 2
TIGR_CMR|NSE_0411 - symbol:NSE_0411 "ribonucleoside-dipho... 293 1.7e-60 3
UNIPROTKB|Q9KSK0 - symbol:VC1256 "Ribonucleoside-diphosph... 556 1.6e-56 2
TIGR_CMR|VC_1256 - symbol:VC_1256 "ribonucleoside-diphosp... 556 1.6e-56 2
UNIPROTKB|P00452 - symbol:nrdA species:83333 "Escherichia... 551 1.3e-54 2
TIGR_CMR|BA_1371 - symbol:BA_1371 "ribonucleoside-diphosp... 507 6.3e-54 3
TIGR_CMR|CPS_2328 - symbol:CPS_2328 "ribonucleoside-dipho... 534 3.2e-53 2
UNIPROTKB|I3LEK6 - symbol:I3LEK6 "Ribonucleoside-diphosph... 514 6.9e-49 1
TIGR_CMR|SO_2415 - symbol:SO_2415 "ribonucleoside-diphosp... 506 4.4e-48 2
TIGR_CMR|GSU_1871 - symbol:GSU_1871 "ribonucleoside-dipho... 257 4.7e-44 4
TIGR_CMR|ECH_0459 - symbol:ECH_0459 "ribonucleoside-dipho... 296 8.0e-44 2
UNIPROTKB|H0YCY7 - symbol:RRM1 "Ribonucleoside-diphosphat... 463 3.1e-43 1
TIGR_CMR|APH_0331 - symbol:APH_0331 "ribonucleoside-dipho... 281 3.1e-41 2
TIGR_CMR|CHY_0676 - symbol:CHY_0676 "ribonucleoside-dipho... 290 3.1e-38 3
TIGR_CMR|DET_0345 - symbol:DET_0345 "ribonucleotide reduc... 248 8.6e-38 4
UNIPROTKB|P39452 - symbol:nrdE species:83333 "Escherichia... 424 7.7e-37 1
TIGR_CMR|DET_0623 - symbol:DET_0623 "ribonucleotide reduc... 261 1.5e-36 3
UNIPROTKB|P0A5W8 - symbol:nrdE "Ribonucleoside-diphosphat... 414 1.1e-35 1
UNIPROTKB|Q0C1X7 - symbol:HNE_1555 "Ribonucleoside-diphos... 194 9.5e-29 3
TIGR_CMR|SPO_3194 - symbol:SPO_3194 "ribonucleoside-dipho... 186 5.3e-28 3
UNIPROTKB|O53767 - symbol:nrdZ "Ribonucleoside-diphosphat... 215 9.5e-27 3
UNIPROTKB|E9PP77 - symbol:RRM1 "Ribonucleoside-diphosphat... 303 6.5e-26 1
TIGR_CMR|DET_0244 - symbol:DET_0244 "ribonucleotide reduc... 170 7.8e-26 4
UNIPROTKB|Q5LRJ1 - symbol:nrdJ "Ribonucleoside-diphosphat... 131 9.8e-10 3
TIGR_CMR|SPO_2136 - symbol:SPO_2136 "ribonucleoside-dipho... 131 9.8e-10 3
>TAIR|locus:2052469 [details] [associations]
symbol:RNR1 "ribonucleotide reductase 1" species:3702
"Arabidopsis thaliana" [GO:0004748 "ribonucleoside-diphosphate
reductase activity, thioredoxin disulfide as acceptor"
evidence=IEA;ISS] [GO:0005524 "ATP binding" evidence=IEA]
[GO:0005737 "cytoplasm" evidence=ISM] [GO:0005971
"ribonucleoside-diphosphate reductase complex" evidence=IEA;ISS]
[GO:0006260 "DNA replication" evidence=IEA;ISS;IMP] [GO:0055114
"oxidation-reduction process" evidence=IEA] [GO:0046686 "response
to cadmium ion" evidence=IEP] [GO:0009202 "deoxyribonucleoside
triphosphate biosynthetic process" evidence=IMP] [GO:0006094
"gluconeogenesis" evidence=RCA] [GO:0006261 "DNA-dependent DNA
replication" evidence=RCA] [GO:0007010 "cytoskeleton organization"
evidence=RCA] [GO:0009165 "nucleotide biosynthetic process"
evidence=RCA] [GO:0010498 "proteasomal protein catabolic process"
evidence=RCA] InterPro:IPR000788 InterPro:IPR008926
InterPro:IPR013346 InterPro:IPR013509 Pfam:PF00317 Pfam:PF02867
PRINTS:PR01183 PROSITE:PS00089 UniPathway:UPA00326 Pfam:PF03477
GO:GO:0005524 GO:GO:0046686 EMBL:CP002685 GenomeReviews:CT485783_GR
GO:GO:0006260 EMBL:AC007019 GO:GO:0009263 KO:K10807
InterPro:IPR005144 PROSITE:PS51161 eggNOG:COG0209 GO:GO:0005971
GO:GO:0004748 SUPFAM:SSF48168 GO:GO:0009202 EMBL:AF092841
EMBL:AY035080 EMBL:BT008573 IPI:IPI00525243 PIR:B84605 PIR:T51813
RefSeq:NP_179770.1 UniGene:At.115 ProteinModelPortal:Q9SJ20
SMR:Q9SJ20 STRING:Q9SJ20 PaxDb:Q9SJ20 PRIDE:Q9SJ20
EnsemblPlants:AT2G21790.1 GeneID:816715 KEGG:ath:AT2G21790
GeneFarm:2079 TAIR:At2g21790 HOGENOM:HOG000057035 InParanoid:Q9SJ20
OMA:PQARNSN PhylomeDB:Q9SJ20 ProtClustDB:PLN02437
Genevestigator:Q9SJ20 GermOnline:AT2G21790 TIGRFAMs:TIGR02506
Uniprot:Q9SJ20
Length = 816
Score = 3679 (1300.1 bits), Expect = 0., P = 0.
Identities = 691/816 (84%), Positives = 745/816 (91%)
Query: 1 MYVVKRDGRQEAVHFDKITARLKKLSYGLSTEHCDPVLVSQKVCAGVYKGVTTSQLDELX 60
MYVVKRDGRQE VHFDKITARLKKLSYGLS++HCDPVLV+QKVCAGVYKGVTTSQLDEL
Sbjct: 1 MYVVKRDGRQETVHFDKITARLKKLSYGLSSDHCDPVLVAQKVCAGVYKGVTTSQLDELA 60
Query: 61 XXXXXXXXXNHPDYASLAARIAVSNLHKNTKKSFSETIKDMYNHYNERSGLKAPLIADDI 120
NHPDYASLAARIAVSNLHKNTKKSFSETIKDM+ H N+RSGLK+PLIADD+
Sbjct: 61 AETAAAMTCNHPDYASLAARIAVSNLHKNTKKSFSETIKDMFYHVNDRSGLKSPLIADDV 120
Query: 121 YEIIMKNAACLDSEIIXXXXXXXXXXXXKTLERSYLLKVQGKVVERPQHMLMRVSIGIHK 180
+EIIM+NAA LDSEII KTLERSYLLKVQG VVERPQHMLMRV++GIHK
Sbjct: 121 FEIIMQNAARLDSEIIYDRDFEYDYFGFKTLERSYLLKVQGTVVERPQHMLMRVAVGIHK 180
Query: 181 DDIDSAIKTYHMMSQRWFTHASPTLFNAGTPRPQLSSCFLVCMKDDSIEGIYETLKECAV 240
DDIDS I+TYH+MSQRWFTHASPTLFNAGTPRPQLSSCFLVCMKDDSIEGIYETLKECAV
Sbjct: 181 DDIDSVIQTYHLMSQRWFTHASPTLFNAGTPRPQLSSCFLVCMKDDSIEGIYETLKECAV 240
Query: 241 ISKSAGGIGVSVHNIRATGSYIRGTNGTSNGIVPMLRVFNDTARYVDQGGGKRKGAFAVY 300
ISKSAGGIGVSVHNIRATGSYIRGTNGTSNGIVPMLRVFNDTARYVDQGGGKRKGAFAVY
Sbjct: 241 ISKSAGGIGVSVHNIRATGSYIRGTNGTSNGIVPMLRVFNDTARYVDQGGGKRKGAFAVY 300
Query: 301 LEPWHADIFEFLNLKKNHGKEEHRARDLFYALWVPDLFMERVQTNGQWSLFCPNEASGLA 360
LEPWHAD++EFL L+KNHGKEEHRARDLFYALW+PDLFMERVQ NGQWSLFCPNEA GLA
Sbjct: 301 LEPWHADVYEFLELRKNHGKEEHRARDLFYALWLPDLFMERVQNNGQWSLFCPNEAPGLA 360
Query: 361 DCWGAEFEKLYTHYEREGKAKKVVQAQNLWFEILTSQIETGTPYMLFKDTCNRKSNQQNL 420
DCWGAEFE LYT YEREGKAKKVVQAQ LW+EILTSQ+ETGTPYMLFKD+CNRKSNQQNL
Sbjct: 361 DCWGAEFETLYTKYEREGKAKKVVQAQQLWYEILTSQVETGTPYMLFKDSCNRKSNQQNL 420
Query: 421 GTIKSSNLCTEIIEYTSPTETAVCNLASIALPRFVREKDVPVESHPSRIVGSRGSKNRFF 480
GTIKSSNLCTEIIEYTSPTETAVCNLASIALPRFVREK VP++SHP ++ GS SKNR+F
Sbjct: 421 GTIKSSNLCTEIIEYTSPTETAVCNLASIALPRFVREKGVPLDSHPPKLAGSLDSKNRYF 480
Query: 481 DFEKLAEVTAIVTENLNKIIDVNYYPVETARRSNLRHRPIGIGVQGLADTFILLGMAFES 540
DFEKLAEVTA VT NLNKIIDVNYYPVETA+ SN+RHRPIGIGVQGLAD FILLGM F+S
Sbjct: 481 DFEKLAEVTATVTVNLNKIIDVNYYPVETAKTSNMRHRPIGIGVQGLADAFILLGMPFDS 540
Query: 541 PEAQQLNKDIFETIYYHALKTSSEIAAKEGPYETYHNSPVSKGILQPDMWNVIPSDRWDW 600
PEAQQLNKDIFETIYYHALK S+E+AA+ GPYETY SPVSKGILQPDMWNVIPSDRWDW
Sbjct: 541 PEAQQLNKDIFETIYYHALKASTELAARLGPYETYAGSPVSKGILQPDMWNVIPSDRWDW 600
Query: 601 GVLRDMISKNGVRNSLLVAPMPTASTSQILGNNECFEPYTSNIYSRRVLSGEFVVVNKHL 660
VLRDMISKNGVRNSLLVAPMPTASTSQILGNNECFEPYTSNIYSRRVLSGEFVVVNKHL
Sbjct: 601 AVLRDMISKNGVRNSLLVAPMPTASTSQILGNNECFEPYTSNIYSRRVLSGEFVVVNKHL 660
Query: 661 LHDLTEMGIWSPTIKNKIIYDDGSVQKIPEIPEELKMIYKTVWEIKQMTLVDMAVDRGCY 720
LHDLT+MG+W+PT+KNK+I ++GS+ + EIP++LK IY+TVWEIKQ T+VDMA DRGCY
Sbjct: 661 LHDLTDMGLWTPTLKNKLINENGSIVNVAEIPDDLKAIYRTVWEIKQRTVVDMAADRGCY 720
Query: 721 IDQSQSLNIHMDQPNFKKVTSLHFRTWSRGLKTGMYYLRSRAAADAIKFTVDTSVFKEKP 780
IDQSQSLNIHMD+PNF K+TSLHF TW +GLKTGMYYLRSRAAADAIKFTVDT++ KEKP
Sbjct: 721 IDQSQSLNIHMDKPNFAKLTSLHFYTWKKGLKTGMYYLRSRAAADAIKFTVDTAMLKEKP 780
Query: 781 -----EKPELVVDDETKMAQVVCSLTNREECMACGS 811
+K D+ETK+AQ+VCSLTN EEC+ACGS
Sbjct: 781 SVAEGDKEVEEEDNETKLAQMVCSLTNPEECLACGS 816
>RGD|1592569 [details] [associations]
symbol:Rrm1 "ribonucleotide reductase M1" species:10116 "Rattus
norvegicus" [GO:0000278 "mitotic cell cycle" evidence=IEP]
[GO:0003674 "molecular_function" evidence=ND] [GO:0005635 "nuclear
envelope" evidence=IDA] [GO:0005737 "cytoplasm" evidence=IDA]
[GO:0006206 "pyrimidine nucleobase metabolic process" evidence=IEP]
[GO:0008584 "male gonad development" evidence=IEP] [GO:0010212
"response to ionizing radiation" evidence=IEP] [GO:0021846 "cell
proliferation in forebrain" evidence=IEP] [GO:0042995 "cell
projection" evidence=IDA] [GO:0043025 "neuronal cell body"
evidence=IDA] [GO:0060041 "retina development in camera-type eye"
evidence=IEP] InterPro:IPR000788 InterPro:IPR008926
InterPro:IPR013346 InterPro:IPR013509 Pfam:PF00317 Pfam:PF02867
PRINTS:PR01183 PROSITE:PS00089 UniPathway:UPA00326 Pfam:PF03477
RGD:1592569 GO:GO:0005524 GO:GO:0005737 GO:GO:0005635 GO:GO:0006260
GO:GO:0043025 GO:GO:0006206 EMBL:CH473956 GO:GO:0010212
GO:GO:0008584 GO:GO:0060041 GO:GO:0042995 GO:GO:0021846
GO:GO:0000278 KO:K10807 InterPro:IPR005144 PROSITE:PS51161
GO:GO:0005971 GO:GO:0004748 SUPFAM:SSF48168 TIGRFAMs:TIGR02506
CTD:6240 HOVERGEN:HBG003447 EMBL:BC085906 IPI:IPI00361151
RefSeq:NP_001013254.1 UniGene:Rn.162454 SMR:Q5U2Q5 GeneID:685579
KEGG:rno:685579 ChEMBL:CHEMBL5130 NextBio:729994
Genevestigator:Q5U2Q5 Uniprot:Q5U2Q5
Length = 792
Score = 1654 (587.3 bits), Expect = 7.8e-291, Sum P(2) = 7.8e-291
Identities = 306/455 (67%), Positives = 366/455 (80%)
Query: 1 MYVVKRDGRQEAVHFDKITARLKKLSYGLSTEHCDPVLVSQKVCAGVYKGVTTSQLDELX 60
M+V+KRDGRQE V FDKIT+R++KL YGL+ + DP ++ KV G+Y GVTT +LD L
Sbjct: 1 MHVIKRDGRQERVMFDKITSRIQKLCYGLNMDFVDPAQITMKVIQGLYSGVTTVELDTLA 60
Query: 61 XXXXXXXXXNHPDYASLAARIAVSNLHKNTKKSFSETIKDMYNHYNERSGLKAPLIADDI 120
HPDYA LAARIAVSNLHK TKK FS+ ++D+YN+ N +G +P++A
Sbjct: 61 AETAATLTTKHPDYAILAARIAVSNLHKETKKVFSDVMEDLYNYINPHNGRHSPMVASST 120
Query: 121 YEIIMKNAACLDSEIIXXXXXXXXXXXXKTLERSYLLKVQGKVVERPQHMLMRVSIGIHK 180
EI+M + L+S II KTLERSYLLK+ GKV ERPQHMLMRVS+GIHK
Sbjct: 121 LEIVMAHKDRLNSAIIYDRDFSYNYFGFKTLERSYLLKINGKVAERPQHMLMRVSVGIHK 180
Query: 181 DDIDSAIKTYHMMSQRWFTHASPTLFNAGTPRPQLSSCFLVCMKDDSIEGIYETLKECAV 240
+DID+AI+TY+++S++WFTHASPTLFNAGT RPQLSSCFL+ MKDDSIEGIY+TLK+CA+
Sbjct: 181 EDIDAAIETYNLLSEKWFTHASPTLFNAGTNRPQLSSCFLLSMKDDSIEGIYDTLKQCAL 240
Query: 241 ISKSAGGIGVSVHNIRATGSYIRGTNGTSNGIVPMLRVFNDTARYVDQGGGKRKGAFAVY 300
ISKSAGGIGV+V IRATGSYI GTNG SNG+VPMLRV+N+TARYVDQGG KR GAFA+Y
Sbjct: 241 ISKSAGGIGVAVSCIRATGSYIAGTNGNSNGLVPMLRVYNNTARYVDQGGNKRPGAFAIY 300
Query: 301 LEPWHADIFEFLNLKKNHGKEEHRARDLFYALWVPDLFMERVQTNGQWSLFCPNEASGLA 360
LEPWH DIFEFL+LKKN GKEE RARDLF+ALW+PDLFM+RV+TN WSL CPNE GL
Sbjct: 301 LEPWHLDIFEFLDLKKNTGKEEQRARDLFFALWIPDLFMKRVETNQDWSLMCPNECPGLD 360
Query: 361 DCWGAEFEKLYTHYEREGKAKKVVQAQNLWFEILTSQIETGTPYMLFKDTCNRKSNQQNL 420
+ WG EFEKLY YE++G+ +KVV+AQ LW+ I+ SQ ETGTPYML+KD+CNRKSNQQNL
Sbjct: 361 EVWGEEFEKLYESYEKQGRVRKVVKAQQLWYAIIESQTETGTPYMLYKDSCNRKSNQQNL 420
Query: 421 GTIKSSNLCTEIIEYTSPTETAVCNLASIALPRFV 455
GTIK SNLCTEI+EYTS E AVCNLAS+AL +V
Sbjct: 421 GTIKCSNLCTEIVEYTSKDEVAVCNLASLALNMYV 455
Score = 1163 (414.5 bits), Expect = 7.8e-291, Sum P(2) = 7.8e-291
Identities = 220/371 (59%), Positives = 277/371 (74%)
Query: 441 TAVCNLASIALPRFVREKDVPVESHPSRIVGSRGSKNRFFDFEKLAEVTAIVTENLNKII 500
T C+ + + + +V V + S + + +DFEKLAEVT ++ NLNKII
Sbjct: 422 TIKCSNLCTEIVEYTSKDEVAVCNLASLALNMYVTPEHTYDFEKLAEVTKVIVRNLNKII 481
Query: 501 DVNYYPVETARRSNLRHRPIGIGVQGLADTFILLGMAFESPEAQQLNKDIFETIYYHALK 560
D+NYYP+ A SN RHRPIGIGVQGLAD FIL+ FESPEAQ LNK IFETIYY AL+
Sbjct: 482 DINYYPIPEAHLSNKRHRPIGIGVQGLADAFILMRYPFESPEAQLLNKQIFETIYYGALE 541
Query: 561 TSSEIAAKEGPYETYHNSPVSKGILQPDMWNVIPSDRWDWGVLRDMISKNGVRNSLLVAP 620
S ++A + GPYETY SPVSKGILQ DMWNV P+D WDW +L++ I+K G+RNSLL+AP
Sbjct: 542 ASCDLAKEYGPYETYEGSPVSKGILQYDMWNVTPTDLWDWKLLKEKIAKYGIRNSLLIAP 601
Query: 621 MPTASTSQILGNNECFEPYTSNIYSRRVLSGEFVVVNKHLLHDLTEMGIWSPTIKNKIIY 680
MPTAST+QILGNNE EPYTSNIY+RRVLSGEF +VN HLL DLTE G+W+ +KN+II
Sbjct: 602 MPTASTAQILGNNESIEPYTSNIYTRRVLSGEFQIVNPHLLKDLTERGLWNEEMKNQIIA 661
Query: 681 DDGSVQKIPEIPEELKMIYKTVWEIKQMTLVDMAVDRGCYIDQSQSLNIHMDQPNFKKVT 740
+GS+Q IPEIPE+LK +YKTVWEI Q T++ MA +RG +IDQSQSLNIH+ +PN+ K+T
Sbjct: 662 CNGSIQSIPEIPEDLKQLYKTVWEISQKTVLKMAAERGAFIDQSQSLNIHIAEPNYGKLT 721
Query: 741 SLHFRTWSRGLKTGMYYLRSRAAADAIKFTVDTSVFKEKPEKPELVVDDETKMAQVVCSL 800
S+HF W +GLKTGMYYLR+R AA+ I+FT++ K+K + + + E A +VCSL
Sbjct: 722 SMHFYGWKQGLKTGMYYLRTRPAANPIQFTLNKEKLKDKEKALKEEEEKERNTAAMVCSL 781
Query: 801 TNREECMACGS 811
NREEC+ CGS
Sbjct: 782 ENREECLMCGS 792
>MGI|MGI:98180 [details] [associations]
symbol:Rrm1 "ribonucleotide reductase M1" species:10090 "Mus
musculus" [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0003824 "catalytic activity" evidence=IEA] [GO:0004748
"ribonucleoside-diphosphate reductase activity, thioredoxin
disulfide as acceptor" evidence=IDA] [GO:0005515 "protein binding"
evidence=IPI] [GO:0005524 "ATP binding" evidence=IEA] [GO:0005737
"cytoplasm" evidence=IEA] [GO:0005971 "ribonucleoside-diphosphate
reductase complex" evidence=IEA] [GO:0006260 "DNA replication"
evidence=IEA] [GO:0008152 "metabolic process" evidence=IEA]
[GO:0009263 "deoxyribonucleotide biosynthetic process"
evidence=IDA] [GO:0016491 "oxidoreductase activity" evidence=IEA]
[GO:0017076 "purine nucleotide binding" evidence=IDA] [GO:0051259
"protein oligomerization" evidence=IPI] [GO:0051290 "protein
heterotetramerization" evidence=IPI] [GO:0055114
"oxidation-reduction process" evidence=IEA] InterPro:IPR000788
InterPro:IPR008926 InterPro:IPR013346 InterPro:IPR013509
Pfam:PF00317 Pfam:PF02867 PRINTS:PR01183 PROSITE:PS00089
UniPathway:UPA00326 MGI:MGI:98180 Pfam:PF03477 GO:GO:0005524
GO:GO:0006260 EMBL:CH466531 GO:GO:0051290 GO:GO:0017076
GO:GO:0009263 KO:K10807 InterPro:IPR005144 PROSITE:PS51161
eggNOG:COG0209 GO:GO:0005971 GO:GO:0004748 SUPFAM:SSF48168
HOGENOM:HOG000057035 TIGRFAMs:TIGR02506
GeneTree:ENSGT00390000001372 OMA:YKYGVKT CTD:6240
HOVERGEN:HBG003447 OrthoDB:EOG4ZW59G EMBL:K02927 EMBL:AK088043
EMBL:AK137075 EMBL:AK168586 EMBL:BC016450 IPI:IPI00315127
PIR:A24050 RefSeq:NP_033129.2 UniGene:Mm.197486 UniGene:Mm.415177
ProteinModelPortal:P07742 SMR:P07742 STRING:P07742
PhosphoSite:P07742 PaxDb:P07742 PRIDE:P07742
Ensembl:ENSMUST00000033283 GeneID:20133 KEGG:mmu:20133
InParanoid:Q91YM8 BindingDB:P07742 ChEMBL:CHEMBL3739 NextBio:297643
Bgee:P07742 CleanEx:MM_RRM1 Genevestigator:P07742
GermOnline:ENSMUSG00000030978 Uniprot:P07742
Length = 792
Score = 1656 (588.0 bits), Expect = 1.0e-290, Sum P(2) = 1.0e-290
Identities = 306/455 (67%), Positives = 366/455 (80%)
Query: 1 MYVVKRDGRQEAVHFDKITARLKKLSYGLSTEHCDPVLVSQKVCAGVYKGVTTSQLDELX 60
M+V+KRDGRQE V FDKIT+R++KL YGL+ + DP ++ KV G+Y GVTT +LD L
Sbjct: 1 MHVIKRDGRQERVMFDKITSRIQKLCYGLNMDFVDPAQITMKVIQGLYSGVTTVELDTLA 60
Query: 61 XXXXXXXXXNHPDYASLAARIAVSNLHKNTKKSFSETIKDMYNHYNERSGLKAPLIADDI 120
HPDYA LAARIAVSNLHK TKK FS+ ++D+YN+ N +G +P++A
Sbjct: 61 AETAATLTTKHPDYAILAARIAVSNLHKETKKVFSDVMEDLYNYINPHNGRHSPMVASST 120
Query: 121 YEIIMKNAACLDSEIIXXXXXXXXXXXXKTLERSYLLKVQGKVVERPQHMLMRVSIGIHK 180
+I+M N L+S II KTLERSYLLK+ GKV ERPQHMLMRVS+GIHK
Sbjct: 121 LDIVMANKDRLNSAIIYDRDFSYNYFGFKTLERSYLLKINGKVAERPQHMLMRVSVGIHK 180
Query: 181 DDIDSAIKTYHMMSQRWFTHASPTLFNAGTPRPQLSSCFLVCMKDDSIEGIYETLKECAV 240
+DID+AI+TY+++S++WFTHASPTLFNAGT RPQLSSCFL+ MKDDSIEGIY+TLK+CA+
Sbjct: 181 EDIDAAIETYNLLSEKWFTHASPTLFNAGTNRPQLSSCFLLSMKDDSIEGIYDTLKQCAL 240
Query: 241 ISKSAGGIGVSVHNIRATGSYIRGTNGTSNGIVPMLRVFNDTARYVDQGGGKRKGAFAVY 300
ISKSAGGIGV+V IRATGSYI GTNG SNG+VPMLRV+N+TARYVDQGG KR GAFA+Y
Sbjct: 241 ISKSAGGIGVAVSCIRATGSYIAGTNGNSNGLVPMLRVYNNTARYVDQGGNKRPGAFAIY 300
Query: 301 LEPWHADIFEFLNLKKNHGKEEHRARDLFYALWVPDLFMERVQTNGQWSLFCPNEASGLA 360
LEPWH DIFEFL+LKKN GKEE RARDLF+ALW+PDLFM+RV+TN WSL CPNE GL
Sbjct: 301 LEPWHLDIFEFLDLKKNTGKEEQRARDLFFALWIPDLFMKRVETNQDWSLMCPNECPGLD 360
Query: 361 DCWGAEFEKLYTHYEREGKAKKVVQAQNLWFEILTSQIETGTPYMLFKDTCNRKSNQQNL 420
+ WG EFEKLY YE++G+ +KVV+AQ LW+ I+ SQ ETGTPYML+KD+CNRKSNQQNL
Sbjct: 361 EVWGEEFEKLYESYEKQGRVRKVVKAQQLWYAIIESQTETGTPYMLYKDSCNRKSNQQNL 420
Query: 421 GTIKSSNLCTEIIEYTSPTETAVCNLASIALPRFV 455
GTIK SNLCTEI+EYTS E AVCNLAS+AL +V
Sbjct: 421 GTIKCSNLCTEIVEYTSKDEVAVCNLASLALNMYV 455
Score = 1160 (413.4 bits), Expect = 1.0e-290, Sum P(2) = 1.0e-290
Identities = 220/371 (59%), Positives = 276/371 (74%)
Query: 441 TAVCNLASIALPRFVREKDVPVESHPSRIVGSRGSKNRFFDFEKLAEVTAIVTENLNKII 500
T C+ + + + +V V + S + + +DFEKLAEVT ++ NLNKII
Sbjct: 422 TIKCSNLCTEIVEYTSKDEVAVCNLASLALNMYVTPEHTYDFEKLAEVTKVIVRNLNKII 481
Query: 501 DVNYYPVETARRSNLRHRPIGIGVQGLADTFILLGMAFESPEAQQLNKDIFETIYYHALK 560
D+NYYP+ A SN RHRPIGIGVQGLAD FIL+ FESPEAQ LNK IFETIYY AL+
Sbjct: 482 DINYYPIPEAHLSNKRHRPIGIGVQGLADAFILMRYPFESPEAQLLNKQIFETIYYGALE 541
Query: 561 TSSEIAAKEGPYETYHNSPVSKGILQPDMWNVIPSDRWDWGVLRDMISKNGVRNSLLVAP 620
S E+A + GPYETY SPVSKGILQ DMWNV P+D WDW L++ I+K G+RNSLL+AP
Sbjct: 542 ASCELAKEYGPYETYEGSPVSKGILQYDMWNVAPTDLWDWKPLKEKIAKYGIRNSLLIAP 601
Query: 621 MPTASTSQILGNNECFEPYTSNIYSRRVLSGEFVVVNKHLLHDLTEMGIWSPTIKNKIIY 680
MPTAST+QILGNNE EPYTSNIY+RRVLSGEF +VN HLL DLTE G+W+ +KN+II
Sbjct: 602 MPTASTAQILGNNESIEPYTSNIYTRRVLSGEFQIVNPHLLKDLTERGLWNEEMKNQIIA 661
Query: 681 DDGSVQKIPEIPEELKMIYKTVWEIKQMTLVDMAVDRGCYIDQSQSLNIHMDQPNFKKVT 740
+GS+Q IPEIP++LK +YKTVWEI Q T++ MA +RG +IDQSQSLNIH+ +PN+ K+T
Sbjct: 662 CNGSIQSIPEIPDDLKQLYKTVWEISQKTVLKMAAERGAFIDQSQSLNIHIAEPNYGKLT 721
Query: 741 SLHFRTWSRGLKTGMYYLRSRAAADAIKFTVDTSVFKEKPEKPELVVDDETKMAQVVCSL 800
S+HF W +GLKTGMYYLR+R AA+ I+FT++ K+K + + + E A +VCSL
Sbjct: 722 SMHFYGWKQGLKTGMYYLRTRPAANPIQFTLNKEKLKDKEKALKEEEEKERNTAAMVCSL 781
Query: 801 TNREECMACGS 811
NREEC+ CGS
Sbjct: 782 ENREECLMCGS 792
>UNIPROTKB|P23921 [details] [associations]
symbol:RRM1 "Ribonucleoside-diphosphate reductase large
subunit" species:9606 "Homo sapiens" [GO:0005524 "ATP binding"
evidence=IEA] [GO:0051290 "protein heterotetramerization"
evidence=IEA] [GO:0005971 "ribonucleoside-diphosphate reductase
complex" evidence=NAS] [GO:0006260 "DNA replication"
evidence=IEA;NAS] [GO:0004748 "ribonucleoside-diphosphate reductase
activity, thioredoxin disulfide as acceptor" evidence=ISS;NAS]
[GO:0009263 "deoxyribonucleotide biosynthetic process"
evidence=ISS] [GO:0005654 "nucleoplasm" evidence=TAS] [GO:0005829
"cytosol" evidence=TAS] [GO:0015949 "nucleobase-containing small
molecule interconversion" evidence=TAS] [GO:0044281 "small molecule
metabolic process" evidence=TAS] [GO:0055086 "nucleobase-containing
small molecule metabolic process" evidence=TAS] [GO:0005515
"protein binding" evidence=IPI] Reactome:REACT_111217
InterPro:IPR000788 InterPro:IPR008926 InterPro:IPR013346
InterPro:IPR013509 Pfam:PF00317 Pfam:PF02867 PRINTS:PR01183
PROSITE:PS00089 UniPathway:UPA00326 Pfam:PF03477 GO:GO:0005829
GO:GO:0005524 GO:GO:0005654 GO:GO:0006260 DrugBank:DB01073
GO:GO:0051290 GO:GO:0015949 DrugBank:DB00441 DrugBank:DB00631
GO:GO:0009263 KO:K10807 InterPro:IPR005144 PROSITE:PS51161
eggNOG:COG0209 GO:GO:0005971 GO:GO:0004748 SUPFAM:SSF48168
HOGENOM:HOG000057035 OMA:PQARNSN TIGRFAMs:TIGR02506 CTD:6240
HOVERGEN:HBG003447 OrthoDB:EOG4ZW59G EMBL:X59543 EMBL:X59617
EMBL:AF107045 EMBL:BC006498 EMBL:L10342 IPI:IPI00013871 PIR:S16680
RefSeq:NP_001024.1 UniGene:Hs.445705 PDB:2WGH PDB:3HNC PDB:3HND
PDB:3HNE PDB:3HNF PDBsum:2WGH PDBsum:3HNC PDBsum:3HND PDBsum:3HNE
PDBsum:3HNF ProteinModelPortal:P23921 SMR:P23921 DIP:DIP-24233N
IntAct:P23921 MINT:MINT-1406473 STRING:P23921 PhosphoSite:P23921
DMDM:132608 PaxDb:P23921 PeptideAtlas:P23921 PRIDE:P23921
DNASU:6240 Ensembl:ENST00000300738 GeneID:6240 KEGG:hsa:6240
UCSC:uc001lyw.4 GeneCards:GC11P004115 HGNC:HGNC:10451 HPA:CAB022093
MIM:180410 neXtProt:NX_P23921 PharmGKB:PA298 InParanoid:P23921
PhylomeDB:P23921 BindingDB:P23921 ChEMBL:CHEMBL1830 ChiTaRS:RRM1
DrugBank:DB01005 EvolutionaryTrace:P23921 GenomeRNAi:6240
NextBio:24233 ArrayExpress:P23921 Bgee:P23921 CleanEx:HS_RRM1
Genevestigator:P23921 GermOnline:ENSG00000167325 Uniprot:P23921
Length = 792
Score = 1656 (588.0 bits), Expect = 8.9e-290, Sum P(2) = 8.9e-290
Identities = 306/455 (67%), Positives = 366/455 (80%)
Query: 1 MYVVKRDGRQEAVHFDKITARLKKLSYGLSTEHCDPVLVSQKVCAGVYKGVTTSQLDELX 60
M+V+KRDGRQE V FDKIT+R++KL YGL+ + DP ++ KV G+Y GVTT +LD L
Sbjct: 1 MHVIKRDGRQERVMFDKITSRIQKLCYGLNMDFVDPAQITMKVIQGLYSGVTTVELDTLA 60
Query: 61 XXXXXXXXXNHPDYASLAARIAVSNLHKNTKKSFSETIKDMYNHYNERSGLKAPLIADDI 120
HPDYA LAARIAVSNLHK TKK FS+ ++D+YN+ N +G +P++A
Sbjct: 61 AETAATLTTKHPDYAILAARIAVSNLHKETKKVFSDVMEDLYNYINPHNGKHSPMVAKST 120
Query: 121 YEIIMKNAACLDSEIIXXXXXXXXXXXXKTLERSYLLKVQGKVVERPQHMLMRVSIGIHK 180
+I++ N L+S II KTLERSYLLK+ GKV ERPQHMLMRVS+GIHK
Sbjct: 121 LDIVLANKDRLNSAIIYDRDFSYNYFGFKTLERSYLLKINGKVAERPQHMLMRVSVGIHK 180
Query: 181 DDIDSAIKTYHMMSQRWFTHASPTLFNAGTPRPQLSSCFLVCMKDDSIEGIYETLKECAV 240
+DID+AI+TY+++S+RWFTHASPTLFNAGT RPQLSSCFL+ MKDDSIEGIY+TLK+CA+
Sbjct: 181 EDIDAAIETYNLLSERWFTHASPTLFNAGTNRPQLSSCFLLSMKDDSIEGIYDTLKQCAL 240
Query: 241 ISKSAGGIGVSVHNIRATGSYIRGTNGTSNGIVPMLRVFNDTARYVDQGGGKRKGAFAVY 300
ISKSAGGIGV+V IRATGSYI GTNG SNG+VPMLRV+N+TARYVDQGG KR GAFA+Y
Sbjct: 241 ISKSAGGIGVAVSCIRATGSYIAGTNGNSNGLVPMLRVYNNTARYVDQGGNKRPGAFAIY 300
Query: 301 LEPWHADIFEFLNLKKNHGKEEHRARDLFYALWVPDLFMERVQTNGQWSLFCPNEASGLA 360
LEPWH DIFEFL+LKKN GKEE RARDLF+ALW+PDLFM+RV+TN WSL CPNE GL
Sbjct: 301 LEPWHLDIFEFLDLKKNTGKEEQRARDLFFALWIPDLFMKRVETNQDWSLMCPNECPGLD 360
Query: 361 DCWGAEFEKLYTHYEREGKAKKVVQAQNLWFEILTSQIETGTPYMLFKDTCNRKSNQQNL 420
+ WG EFEKLY YE++G+ +KVV+AQ LW+ I+ SQ ETGTPYML+KD+CNRKSNQQNL
Sbjct: 361 EVWGEEFEKLYASYEKQGRVRKVVKAQQLWYAIIESQTETGTPYMLYKDSCNRKSNQQNL 420
Query: 421 GTIKSSNLCTEIIEYTSPTETAVCNLASIALPRFV 455
GTIK SNLCTEI+EYTS E AVCNLAS+AL +V
Sbjct: 421 GTIKCSNLCTEIVEYTSKDEVAVCNLASLALNMYV 455
Score = 1151 (410.2 bits), Expect = 8.9e-290, Sum P(2) = 8.9e-290
Identities = 219/371 (59%), Positives = 276/371 (74%)
Query: 441 TAVCNLASIALPRFVREKDVPVESHPSRIVGSRGSKNRFFDFEKLAEVTAIVTENLNKII 500
T C+ + + + +V V + S + + +DF+KLAEVT +V NLNKII
Sbjct: 422 TIKCSNLCTEIVEYTSKDEVAVCNLASLALNMYVTSEHTYDFKKLAEVTKVVVRNLNKII 481
Query: 501 DVNYYPVETARRSNLRHRPIGIGVQGLADTFILLGMAFESPEAQQLNKDIFETIYYHALK 560
D+NYYPV A SN RHRPIGIGVQGLAD FIL+ FES EAQ LNK IFETIYY AL+
Sbjct: 482 DINYYPVPEACLSNKRHRPIGIGVQGLADAFILMRYPFESAEAQLLNKQIFETIYYGALE 541
Query: 561 TSSEIAAKEGPYETYHNSPVSKGILQPDMWNVIPSDRWDWGVLRDMISKNGVRNSLLVAP 620
S ++A ++GPYETY SPVSKGILQ DMWNV P+D WDW VL++ I+K G+RNSLL+AP
Sbjct: 542 ASCDLAKEQGPYETYEGSPVSKGILQYDMWNVTPTDLWDWKVLKEKIAKYGIRNSLLIAP 601
Query: 621 MPTASTSQILGNNECFEPYTSNIYSRRVLSGEFVVVNKHLLHDLTEMGIWSPTIKNKIIY 680
MPTAST+QILGNNE EPYTSNIY+RRVLSGEF +VN HLL DLTE G+W +KN+II
Sbjct: 602 MPTASTAQILGNNESIEPYTSNIYTRRVLSGEFQIVNPHLLKDLTERGLWHEEMKNQIIA 661
Query: 681 DDGSVQKIPEIPEELKMIYKTVWEIKQMTLVDMAVDRGCYIDQSQSLNIHMDQPNFKKVT 740
+GS+Q IPEIP++LK +YKTVWEI Q T++ MA +RG +IDQSQSLNIH+ +PN+ K+T
Sbjct: 662 CNGSIQSIPEIPDDLKQLYKTVWEISQKTVLKMAAERGAFIDQSQSLNIHIAEPNYGKLT 721
Query: 741 SLHFRTWSRGLKTGMYYLRSRAAADAIKFTVDTSVFKEKPEKPELVVDDETKMAQVVCSL 800
S+HF W +GLKTGMYYLR+R AA+ I+FT++ K+K + + + E A +VCSL
Sbjct: 722 SMHFYGWKQGLKTGMYYLRTRPAANPIQFTLNKEKLKDKEKVSKEEEEKERNTAAMVCSL 781
Query: 801 TNREECMACGS 811
NR+EC+ CGS
Sbjct: 782 ENRDECLMCGS 792
>UNIPROTKB|F1MSF1 [details] [associations]
symbol:RRM1 "Ribonucleoside-diphosphate reductase"
species:9913 "Bos taurus" [GO:0006260 "DNA replication"
evidence=IEA] [GO:0051290 "protein heterotetramerization"
evidence=IEA] [GO:0009263 "deoxyribonucleotide biosynthetic
process" evidence=IEA] [GO:0004748 "ribonucleoside-diphosphate
reductase activity, thioredoxin disulfide as acceptor"
evidence=IEA] [GO:0005971 "ribonucleoside-diphosphate reductase
complex" evidence=IEA] [GO:0005524 "ATP binding" evidence=IEA]
InterPro:IPR000788 InterPro:IPR008926 InterPro:IPR013346
InterPro:IPR013509 Pfam:PF00317 Pfam:PF02867 PRINTS:PR01183
PROSITE:PS00089 UniPathway:UPA00326 Pfam:PF03477 GO:GO:0005524
GO:GO:0006260 GO:GO:0051290 GO:GO:0009263 InterPro:IPR005144
PROSITE:PS51161 GO:GO:0005971 GO:GO:0004748 SUPFAM:SSF48168
OMA:PQARNSN TIGRFAMs:TIGR02506 GeneTree:ENSGT00390000001372
EMBL:DAAA02040985 EMBL:DAAA02040986 IPI:IPI00884866
UniGene:Bt.12465 Ensembl:ENSBTAT00000017428 Uniprot:F1MSF1
Length = 791
Score = 1651 (586.2 bits), Expect = 3.0e-289, Sum P(2) = 3.0e-289
Identities = 304/455 (66%), Positives = 366/455 (80%)
Query: 1 MYVVKRDGRQEAVHFDKITARLKKLSYGLSTEHCDPVLVSQKVCAGVYKGVTTSQLDELX 60
M+V+KRDGRQE V FDKIT+R++KL YGL+ + DP ++ KV G+Y GVTT +LD L
Sbjct: 1 MHVIKRDGRQERVMFDKITSRIQKLCYGLNMDFVDPAQITMKVIQGLYSGVTTVELDTLA 60
Query: 61 XXXXXXXXXNHPDYASLAARIAVSNLHKNTKKSFSETIKDMYNHYNERSGLKAPLIADDI 120
HPDYA LAARIAVSNLHK TKK FS+ ++D++N+ N +G +P++A
Sbjct: 61 AETAATLTTKHPDYAILAARIAVSNLHKETKKVFSDVMEDLFNYINPHNGKHSPMVAKST 120
Query: 121 YEIIMKNAACLDSEIIXXXXXXXXXXXXKTLERSYLLKVQGKVVERPQHMLMRVSIGIHK 180
+I++ N L+S II KTLERSYLLK+ GKV ERPQHMLMRVS+GIHK
Sbjct: 121 LDIVLANKDRLNSAIIYDRDFSYNYFGFKTLERSYLLKINGKVAERPQHMLMRVSVGIHK 180
Query: 181 DDIDSAIKTYHMMSQRWFTHASPTLFNAGTPRPQLSSCFLVCMKDDSIEGIYETLKECAV 240
+DID+AI+TY+++S++WFTHASPTLFNAGT RPQLSSCFL+ MKDDSIEGIY+TLK+CA+
Sbjct: 181 EDIDAAIETYNLLSEKWFTHASPTLFNAGTNRPQLSSCFLLSMKDDSIEGIYDTLKQCAL 240
Query: 241 ISKSAGGIGVSVHNIRATGSYIRGTNGTSNGIVPMLRVFNDTARYVDQGGGKRKGAFAVY 300
ISKSAGGIGV+V IRATGSYI GTNG SNG+VPMLRV+N+TARYVDQGG KR GAFA+Y
Sbjct: 241 ISKSAGGIGVAVSCIRATGSYIAGTNGNSNGLVPMLRVYNNTARYVDQGGNKRPGAFAIY 300
Query: 301 LEPWHADIFEFLNLKKNHGKEEHRARDLFYALWVPDLFMERVQTNGQWSLFCPNEASGLA 360
LEPWH DIFEFL+LKKN GKEE RARDLF+ALW+PDLFM+RV+TN WSL CPNE GL
Sbjct: 301 LEPWHLDIFEFLDLKKNTGKEEQRARDLFFALWIPDLFMKRVETNQDWSLMCPNECPGLD 360
Query: 361 DCWGAEFEKLYTHYEREGKAKKVVQAQNLWFEILTSQIETGTPYMLFKDTCNRKSNQQNL 420
+ WG EFEKLY YE+EG+ +KV++AQ LW+ I+ SQ ETGTPYML+KD+CNRKSNQQNL
Sbjct: 361 EVWGEEFEKLYERYEKEGRVRKVIKAQQLWYAIIESQTETGTPYMLYKDSCNRKSNQQNL 420
Query: 421 GTIKSSNLCTEIIEYTSPTETAVCNLASIALPRFV 455
GTIK SNLCTEI+EYTS E AVCNLAS+AL +V
Sbjct: 421 GTIKCSNLCTEIVEYTSKDEVAVCNLASLALNMYV 455
Score = 1151 (410.2 bits), Expect = 3.0e-289, Sum P(2) = 3.0e-289
Identities = 220/371 (59%), Positives = 275/371 (74%)
Query: 441 TAVCNLASIALPRFVREKDVPVESHPSRIVGSRGSKNRFFDFEKLAEVTAIVTENLNKII 500
T C+ + + + +V V + S + + +DF KLAEVT ++ NLNKII
Sbjct: 422 TIKCSNLCTEIVEYTSKDEVAVCNLASLALNMYVTSEHTYDFTKLAEVTKVIVRNLNKII 481
Query: 501 DVNYYPVETARRSNLRHRPIGIGVQGLADTFILLGMAFESPEAQQLNKDIFETIYYHALK 560
D+NYYPV A SN HRPIGIGVQGLAD FIL+ FESPEAQ LNK IFETIYY AL+
Sbjct: 482 DINYYPVPEASLSNKLHRPIGIGVQGLADAFILMRYPFESPEAQLLNKQIFETIYYGALE 541
Query: 561 TSSEIAAKEGPYETYHNSPVSKGILQPDMWNVIPSDRWDWGVLRDMISKNGVRNSLLVAP 620
S ++A + GPYETY SPVSKGILQ DMWNV P+D WDW +L++ I+K GVRNSLL+AP
Sbjct: 542 ASCDLAKEYGPYETYEGSPVSKGILQYDMWNVTPTDLWDWNLLKEKIAKYGVRNSLLIAP 601
Query: 621 MPTASTSQILGNNECFEPYTSNIYSRRVLSGEFVVVNKHLLHDLTEMGIWSPTIKNKIIY 680
MPTAST+QILGNNE EPYTSNIY+RRVLSGEF +VN HLL DLTE G+W+ +KN+II
Sbjct: 602 MPTASTAQILGNNESIEPYTSNIYTRRVLSGEFQIVNPHLLKDLTERGLWNEEMKNQIIA 661
Query: 681 DDGSVQKIPEIPEELKMIYKTVWEIKQMTLVDMAVDRGCYIDQSQSLNIHMDQPNFKKVT 740
+GS+Q IPEIP++LK +YKTVWEI Q T++ MA +RG +IDQSQSLNIH+ +PN+ K+T
Sbjct: 662 CNGSIQSIPEIPDDLKQLYKTVWEISQKTVLKMAAERGAFIDQSQSLNIHIAEPNYGKLT 721
Query: 741 SLHFRTWSRGLKTGMYYLRSRAAADAIKFTVDTSVFKEKPEKPELVVDDETKMAQVVCSL 800
S+HF W +GLKTGMYYLR+R AA+ I+FT++ K+K EK + E A +VCSL
Sbjct: 722 SMHFYGWKQGLKTGMYYLRTRPAANPIQFTLNKEKLKDK-EKVSKEEEKERNTAAMVCSL 780
Query: 801 TNREECMACGS 811
NR+EC+ CGS
Sbjct: 781 ENRDECLMCGS 791
>UNIPROTKB|E2R8P1 [details] [associations]
symbol:RRM1 "Ribonucleoside-diphosphate reductase"
species:9615 "Canis lupus familiaris" [GO:0006260 "DNA replication"
evidence=IEA] [GO:0051290 "protein heterotetramerization"
evidence=IEA] [GO:0009263 "deoxyribonucleotide biosynthetic
process" evidence=IEA] [GO:0004748 "ribonucleoside-diphosphate
reductase activity, thioredoxin disulfide as acceptor"
evidence=IEA] [GO:0005971 "ribonucleoside-diphosphate reductase
complex" evidence=IEA] [GO:0005524 "ATP binding" evidence=IEA]
InterPro:IPR000788 InterPro:IPR008926 InterPro:IPR013346
InterPro:IPR013509 Pfam:PF00317 Pfam:PF02867 PRINTS:PR01183
PROSITE:PS00089 UniPathway:UPA00326 Pfam:PF03477 GO:GO:0005524
GO:GO:0006260 GO:GO:0051290 GO:GO:0009263 KO:K10807
InterPro:IPR005144 PROSITE:PS51161 GO:GO:0005971 GO:GO:0004748
SUPFAM:SSF48168 OMA:PQARNSN TIGRFAMs:TIGR02506
GeneTree:ENSGT00390000001372 CTD:6240 EMBL:AAEX03012836
RefSeq:XP_534027.2 Ensembl:ENSCAFT00000009652 GeneID:476823
KEGG:cfa:476823 NextBio:20852423 Uniprot:E2R8P1
Length = 792
Score = 1648 (585.2 bits), Expect = 1.7e-288, Sum P(2) = 1.7e-288
Identities = 304/455 (66%), Positives = 366/455 (80%)
Query: 1 MYVVKRDGRQEAVHFDKITARLKKLSYGLSTEHCDPVLVSQKVCAGVYKGVTTSQLDELX 60
M+V+KRDGRQE V FDKIT+R++KL YGL+ + DP ++ KV G+Y GVTT +LD L
Sbjct: 1 MHVIKRDGRQERVMFDKITSRIQKLCYGLNMDFVDPAQITMKVIQGLYSGVTTVELDTLA 60
Query: 61 XXXXXXXXXNHPDYASLAARIAVSNLHKNTKKSFSETIKDMYNHYNERSGLKAPLIADDI 120
HPDYA LAARIAVSNLHK TKK FS+ ++D+YN+ N +G +P++A
Sbjct: 61 AETAATLTTKHPDYAILAARIAVSNLHKETKKVFSDVMEDLYNYINPHNGRHSPMVAKST 120
Query: 121 YEIIMKNAACLDSEIIXXXXXXXXXXXXKTLERSYLLKVQGKVVERPQHMLMRVSIGIHK 180
+I++ N L+S II KTLERSYLLK+ GKV ERPQHMLMRVS+GIH+
Sbjct: 121 LDIVLANKDRLNSAIIYDRDFSYNYFGFKTLERSYLLKINGKVAERPQHMLMRVSVGIHE 180
Query: 181 DDIDSAIKTYHMMSQRWFTHASPTLFNAGTPRPQLSSCFLVCMKDDSIEGIYETLKECAV 240
+DID+AI+TY+++S++WFTHASPTLFNAGT RPQLSSCFL+ MKDDSIEGIY+TLK+CA+
Sbjct: 181 EDIDAAIETYNLLSEKWFTHASPTLFNAGTNRPQLSSCFLLSMKDDSIEGIYDTLKQCAL 240
Query: 241 ISKSAGGIGVSVHNIRATGSYIRGTNGTSNGIVPMLRVFNDTARYVDQGGGKRKGAFAVY 300
ISKSAGGIGV+V IRATGSYI GTNG SNG+VPMLRV+N+TARYVDQGG KR GAFA+Y
Sbjct: 241 ISKSAGGIGVAVSCIRATGSYIAGTNGNSNGLVPMLRVYNNTARYVDQGGNKRPGAFAIY 300
Query: 301 LEPWHADIFEFLNLKKNHGKEEHRARDLFYALWVPDLFMERVQTNGQWSLFCPNEASGLA 360
LEPWH DIFEFL+LKKN GKEE RARDLF+ALW+PDLFM+RV+TN WSL CPNE GL
Sbjct: 301 LEPWHLDIFEFLDLKKNTGKEEQRARDLFFALWIPDLFMKRVETNQDWSLMCPNECPGLD 360
Query: 361 DCWGAEFEKLYTHYEREGKAKKVVQAQNLWFEILTSQIETGTPYMLFKDTCNRKSNQQNL 420
+ WG EFEKLY YE++G+ +KVV+AQ LW+ I+ SQ ETGTPYML+KD+CNRKSNQQNL
Sbjct: 361 EVWGEEFEKLYESYEKQGRVRKVVKAQQLWYAIIESQTETGTPYMLYKDSCNRKSNQQNL 420
Query: 421 GTIKSSNLCTEIIEYTSPTETAVCNLASIALPRFV 455
GTIK SNLCTEI+EYTS E AVCNLAS+AL +V
Sbjct: 421 GTIKCSNLCTEIVEYTSKDEVAVCNLASLALNMYV 455
Score = 1147 (408.8 bits), Expect = 1.7e-288, Sum P(2) = 1.7e-288
Identities = 217/371 (58%), Positives = 276/371 (74%)
Query: 441 TAVCNLASIALPRFVREKDVPVESHPSRIVGSRGSKNRFFDFEKLAEVTAIVTENLNKII 500
T C+ + + + +V V + S + + +DF+KLAEVT ++ NLNKII
Sbjct: 422 TIKCSNLCTEIVEYTSKDEVAVCNLASLALNMYVTSEHTYDFKKLAEVTKVIVRNLNKII 481
Query: 501 DVNYYPVETARRSNLRHRPIGIGVQGLADTFILLGMAFESPEAQQLNKDIFETIYYHALK 560
D+NYYPV A SN RHRPIGIGVQGLAD FIL+ FESPEAQ LNK IFETIYY AL+
Sbjct: 482 DINYYPVPEACLSNKRHRPIGIGVQGLADAFILMRYPFESPEAQLLNKQIFETIYYGALE 541
Query: 561 TSSEIAAKEGPYETYHNSPVSKGILQPDMWNVIPSDRWDWGVLRDMISKNGVRNSLLVAP 620
S ++A + GPYETY SPVS+GILQ DMWNV P++ WDW +L++ I+K GVRNSLL+AP
Sbjct: 542 ASCDLAKEHGPYETYEGSPVSRGILQYDMWNVTPTELWDWKLLKEKIAKYGVRNSLLIAP 601
Query: 621 MPTASTSQILGNNECFEPYTSNIYSRRVLSGEFVVVNKHLLHDLTEMGIWSPTIKNKIIY 680
MPTAST+QILGNNE EPYTSNIY+RRVLSGEF +VN HLL DLTE G+W+ +KN+II
Sbjct: 602 MPTASTAQILGNNESIEPYTSNIYTRRVLSGEFQIVNPHLLKDLTERGLWNEEMKNQIIA 661
Query: 681 DDGSVQKIPEIPEELKMIYKTVWEIKQMTLVDMAVDRGCYIDQSQSLNIHMDQPNFKKVT 740
+GS+Q IPEIP++LK +YKTVWEI Q ++ MA +RG +IDQSQSLNIH+ +PN+ K+T
Sbjct: 662 CNGSIQSIPEIPDDLKQLYKTVWEISQKIVLKMAAERGAFIDQSQSLNIHIAEPNYGKLT 721
Query: 741 SLHFRTWSRGLKTGMYYLRSRAAADAIKFTVDTSVFKEKPEKPELVVDDETKMAQVVCSL 800
S+HF W +GLKTGMYYLR+R AA+ I+FT++ K+K + + + E A +VCSL
Sbjct: 722 SMHFYGWKQGLKTGMYYLRTRPAANPIQFTLNKEKLKDKEKATKEEEEKERNTAAMVCSL 781
Query: 801 TNREECMACGS 811
NREEC+ CGS
Sbjct: 782 ENREECLMCGS 792
>UNIPROTKB|Q5R919 [details] [associations]
symbol:RRM1 "Ribonucleoside-diphosphate reductase large
subunit" species:9601 "Pongo abelii" [GO:0004748
"ribonucleoside-diphosphate reductase activity, thioredoxin
disulfide as acceptor" evidence=ISS] [GO:0009263
"deoxyribonucleotide biosynthetic process" evidence=ISS]
InterPro:IPR000788 InterPro:IPR008926 InterPro:IPR013346
InterPro:IPR013509 Pfam:PF00317 Pfam:PF02867 PRINTS:PR01183
PROSITE:PS00089 UniPathway:UPA00326 Pfam:PF03477 GO:GO:0005524
GO:GO:0006260 GO:GO:0009263 KO:K10807 InterPro:IPR005144
PROSITE:PS51161 GO:GO:0005971 GO:GO:0004748 SUPFAM:SSF48168
TIGRFAMs:TIGR02506 CTD:6240 HOVERGEN:HBG003447 HSSP:P21524
EMBL:CR859577 RefSeq:NP_001126012.1 UniGene:Pab.9179
ProteinModelPortal:Q5R919 SMR:Q5R919 PRIDE:Q5R919 GeneID:100172956
KEGG:pon:100172956 InParanoid:Q5R919 Uniprot:Q5R919
Length = 792
Score = 1646 (584.5 bits), Expect = 1.7e-288, Sum P(2) = 1.7e-288
Identities = 304/455 (66%), Positives = 365/455 (80%)
Query: 1 MYVVKRDGRQEAVHFDKITARLKKLSYGLSTEHCDPVLVSQKVCAGVYKGVTTSQLDELX 60
M+V+KRDGRQE V FDKIT+R++KL YGL+ + DP ++ KV G+Y GVTT +LD L
Sbjct: 1 MHVIKRDGRQERVMFDKITSRIQKLCYGLNMDFVDPAQITMKVIQGLYSGVTTVELDTLA 60
Query: 61 XXXXXXXXXNHPDYASLAARIAVSNLHKNTKKSFSETIKDMYNHYNERSGLKAPLIADDI 120
HPDYA LAARIAVSNLHK KK FS+ ++D+YN+ N +G +P++A
Sbjct: 61 AETAATLTTKHPDYAILAARIAVSNLHKEAKKVFSDVMEDLYNYINPHNGKHSPMVAKST 120
Query: 121 YEIIMKNAACLDSEIIXXXXXXXXXXXXKTLERSYLLKVQGKVVERPQHMLMRVSIGIHK 180
+I++ N L+S II KTLERSYLLK+ GKV ERPQHMLMRVS+GIHK
Sbjct: 121 LDIVLANKDRLNSAIIYDRDFSYNYFGFKTLERSYLLKINGKVAERPQHMLMRVSVGIHK 180
Query: 181 DDIDSAIKTYHMMSQRWFTHASPTLFNAGTPRPQLSSCFLVCMKDDSIEGIYETLKECAV 240
+DID+AI+TY+++S+RWFTHASPTLFNAGT RPQLSSCFL+ MKDDSIEGIY+TLK+CA+
Sbjct: 181 EDIDAAIETYNLLSERWFTHASPTLFNAGTNRPQLSSCFLLSMKDDSIEGIYDTLKQCAL 240
Query: 241 ISKSAGGIGVSVHNIRATGSYIRGTNGTSNGIVPMLRVFNDTARYVDQGGGKRKGAFAVY 300
ISKSAGGIGV+V IRATGSYI GTNG SNG+VPMLRV+N+TARYVDQGG KR GAFA+Y
Sbjct: 241 ISKSAGGIGVAVSCIRATGSYIAGTNGNSNGLVPMLRVYNNTARYVDQGGNKRPGAFAIY 300
Query: 301 LEPWHADIFEFLNLKKNHGKEEHRARDLFYALWVPDLFMERVQTNGQWSLFCPNEASGLA 360
LEPWH DIFEFL+LKKN GKEE RARDLF+ALW+PDLFM+RV+TN WSL CPNE GL
Sbjct: 301 LEPWHLDIFEFLDLKKNTGKEEQRARDLFFALWIPDLFMKRVETNQDWSLMCPNECPGLD 360
Query: 361 DCWGAEFEKLYTHYEREGKAKKVVQAQNLWFEILTSQIETGTPYMLFKDTCNRKSNQQNL 420
+ WG EFEKLY YE++G+ +KVV+AQ LW+ I+ SQ ETGTPYML+KD+CNRKSNQQNL
Sbjct: 361 EVWGEEFEKLYASYEKQGRVRKVVKAQQLWYAIIESQTETGTPYMLYKDSCNRKSNQQNL 420
Query: 421 GTIKSSNLCTEIIEYTSPTETAVCNLASIALPRFV 455
GTIK S+LCTEI+EYTS E AVCNLAS+AL +V
Sbjct: 421 GTIKCSSLCTEIVEYTSKDEVAVCNLASLALNMYV 455
Score = 1149 (409.5 bits), Expect = 1.7e-288, Sum P(2) = 1.7e-288
Identities = 218/371 (58%), Positives = 276/371 (74%)
Query: 441 TAVCNLASIALPRFVREKDVPVESHPSRIVGSRGSKNRFFDFEKLAEVTAIVTENLNKII 500
T C+ + + + +V V + S + + +DF+KLAEVT +V NLNKII
Sbjct: 422 TIKCSSLCTEIVEYTSKDEVAVCNLASLALNMYVTSEHTYDFKKLAEVTKVVVRNLNKII 481
Query: 501 DVNYYPVETARRSNLRHRPIGIGVQGLADTFILLGMAFESPEAQQLNKDIFETIYYHALK 560
D+NYYPV A SN RHRPIGIGVQGLAD FIL+ FES EAQ LNK IFETIYY AL+
Sbjct: 482 DINYYPVPEACLSNKRHRPIGIGVQGLADAFILMRYPFESAEAQLLNKQIFETIYYGALE 541
Query: 561 TSSEIAAKEGPYETYHNSPVSKGILQPDMWNVIPSDRWDWGVLRDMISKNGVRNSLLVAP 620
S ++A ++GPYETY SPVSKGILQ DMWNV P+D WDW +L++ I+K G+RNSLL+AP
Sbjct: 542 ASCDLAKEQGPYETYEGSPVSKGILQYDMWNVTPTDLWDWKLLKEKIAKYGIRNSLLIAP 601
Query: 621 MPTASTSQILGNNECFEPYTSNIYSRRVLSGEFVVVNKHLLHDLTEMGIWSPTIKNKIIY 680
MPTAST+QILGNNE EPYTSNIY+RRVLSGEF +VN HLL DLTE G+W +KN+II
Sbjct: 602 MPTASTAQILGNNESIEPYTSNIYTRRVLSGEFQIVNPHLLKDLTERGLWHEEMKNQIIA 661
Query: 681 DDGSVQKIPEIPEELKMIYKTVWEIKQMTLVDMAVDRGCYIDQSQSLNIHMDQPNFKKVT 740
+GS+Q IPEIP++LK +YKTVWEI Q T++ MA +RG +IDQSQSLNIH+ +PN+ K+T
Sbjct: 662 CNGSIQSIPEIPDDLKQLYKTVWEISQKTVLKMAAERGAFIDQSQSLNIHIAEPNYGKLT 721
Query: 741 SLHFRTWSRGLKTGMYYLRSRAAADAIKFTVDTSVFKEKPEKPELVVDDETKMAQVVCSL 800
S+HF W +GLKTGMYYLR+R AA+ I+FT++ K+K + + + E A +VCSL
Sbjct: 722 SMHFYGWKQGLKTGMYYLRTRPAANPIQFTLNKEKLKDKEKVSKEEEEKERNTAAMVCSL 781
Query: 801 TNREECMACGS 811
NR+EC+ CGS
Sbjct: 782 ENRDECLMCGS 792
Score = 49 (22.3 bits), Expect = 3.7e-172, Sum P(2) = 3.7e-172
Identities = 43/249 (17%), Positives = 95/249 (38%)
Query: 392 EILTSQIETGTPYMLFKDTCNRKSNQQNLGTIKSSNLCTEIIEY----TSPTETAVCNLA 447
++L QI Y + +C+ Q T + S + I++Y +PT+ L
Sbjct: 525 QLLNKQIFETIYYGALEASCDLAKEQGPYETYEGSPVSKGILQYDMWNVTPTDLWDWKLL 584
Query: 448 SIALPRFVREKDVPVESHPSRIVGSRGSKNRFFDFEKLAEVTAIVTENLNKIIDVNYYPV 507
+ ++ + + P+ N E + T+ + +++ + V
Sbjct: 585 KEKIAKYGIRNSLLIAPMPTASTAQILGNN-----ESIEPYTSNIYTR--RVLSGEFQIV 637
Query: 508 ETARRSNLRHRPIGIGVQGLADTFILLGMAFES-PEAQQLNKDIFETIYYHALKTSSEIA 566
+L R G+ + + + I + +S PE K +++T++ + KT ++A
Sbjct: 638 NPHLLKDLTER--GLWHEEMKNQIIACNGSIQSIPEIPDDLKQLYKTVWEISQKTVLKMA 695
Query: 567 AKEGPYETYHNSPVSKGILQPDMWNVIPSDRWDWGVLRDMISKNGVRNSLL-VAPMPTAS 625
A+ G + S ++ I +P+ + + W K G++ + + P A+
Sbjct: 696 AERGAFIDQSQS-LNIHIAEPNYGKLTSMHFYGW--------KQGLKTGMYYLRTRPAAN 746
Query: 626 TSQILGNNE 634
Q N E
Sbjct: 747 PIQFTLNKE 755
>ZFIN|ZDB-GENE-990415-247 [details] [associations]
symbol:rrm1 "ribonucleotide reductase M1
polypeptide" species:7955 "Danio rerio" [GO:0055114
"oxidation-reduction process" evidence=IEA] [GO:0004748
"ribonucleoside-diphosphate reductase activity, thioredoxin
disulfide as acceptor" evidence=IEA;ISS] [GO:0005971
"ribonucleoside-diphosphate reductase complex" evidence=IEA]
[GO:0006260 "DNA replication" evidence=IEA] [GO:0005524 "ATP
binding" evidence=IEA] [GO:0009263 "deoxyribonucleotide
biosynthetic process" evidence=ISS] [GO:0003824 "catalytic
activity" evidence=IEA] [GO:0005737 "cytoplasm" evidence=IEA]
[GO:0016491 "oxidoreductase activity" evidence=IEA] [GO:0000166
"nucleotide binding" evidence=IEA] [GO:0008152 "metabolic process"
evidence=IEA] InterPro:IPR000788 InterPro:IPR008926
InterPro:IPR013346 InterPro:IPR013509 Pfam:PF00317 Pfam:PF02867
PRINTS:PR01183 PROSITE:PS00089 UniPathway:UPA00326 Pfam:PF03477
ZFIN:ZDB-GENE-990415-247 GO:GO:0005524 GO:GO:0006260 GO:GO:0009263
KO:K10807 InterPro:IPR005144 PROSITE:PS51161 eggNOG:COG0209
GO:GO:0005971 GO:GO:0004748 SUPFAM:SSF48168 HOGENOM:HOG000057035
TIGRFAMs:TIGR02506 EMBL:U57964 IPI:IPI00482388 RefSeq:NP_571530.1
UniGene:Dr.33356 ProteinModelPortal:P79732 SMR:P79732 STRING:P79732
PRIDE:P79732 GeneID:30740 KEGG:dre:30740 CTD:6240
HOVERGEN:HBG003447 InParanoid:P79732 OrthoDB:EOG4ZW59G
NextBio:20807088 ArrayExpress:P79732 Uniprot:P79732
Length = 794
Score = 1642 (583.1 bits), Expect = 9.4e-286, Sum P(2) = 9.4e-286
Identities = 305/455 (67%), Positives = 364/455 (80%)
Query: 1 MYVVKRDGRQEAVHFDKITARLKKLSYGLSTEHCDPVLVSQKVCAGVYKGVTTSQLDELX 60
M+V+KRDG QE V FDKIT+R++KL YGL+++ DP ++ KV G+Y GVTT +LD L
Sbjct: 1 MHVIKRDGGQEGVMFDKITSRIQKLCYGLNSDFVDPTQITMKVIQGLYSGVTTVELDTLA 60
Query: 61 XXXXXXXXXNHPDYASLAARIAVSNLHKNTKKSFSETIKDMYNHYNERSGLKAPLIADDI 120
HPDYA LAARIAVSNLHK TKK FSE ++D+YN+ N + +P+I+ +
Sbjct: 61 AETAATSTTKHPDYAILAARIAVSNLHKETKKVFSEVMEDLYNYVNPLNSRHSPMISKET 120
Query: 121 YEIIMKNAACLDSEIIXXXXXXXXXXXXKTLERSYLLKVQGKVVERPQHMLMRVSIGIHK 180
+I++ N L+S II KTLERSYLLK+ GKV ERPQHMLMRVS+GIHK
Sbjct: 121 LDIVLANKDRLNSAIIYDRDFSYNFFGFKTLERSYLLKINGKVAERPQHMLMRVSVGIHK 180
Query: 181 DDIDSAIKTYHMMSQRWFTHASPTLFNAGTPRPQLSSCFLVCMKDDSIEGIYETLKECAV 240
+DI +AI+TY+++S++WFTHASPTLFNAGT RPQLSSCFL+ MKDDSIEGIY+TLK+CA+
Sbjct: 181 EDIAAAIETYNLLSEKWFTHASPTLFNAGTNRPQLSSCFLLAMKDDSIEGIYDTLKQCAL 240
Query: 241 ISKSAGGIGVSVHNIRATGSYIRGTNGTSNGIVPMLRVFNDTARYVDQGGGKRKGAFAVY 300
ISKSAGGIGV+V IRATG YI GTNG SNG+VPMLRV N+TARYVDQGG KR GAFA+Y
Sbjct: 241 ISKSAGGIGVAVSCIRATGRYIAGTNGNSNGLVPMLRVNNNTARYVDQGGNKRPGAFAMY 300
Query: 301 LEPWHADIFEFLNLKKNHGKEEHRARDLFYALWVPDLFMERVQTNGQWSLFCPNEASGLA 360
LEPWH DIF+FL LKKN GKEE RARDLFYALW+PDLFM+RV+TNG WSL CPN+ GL
Sbjct: 301 LEPWHFDIFDFLELKKNTGKEEQRARDLFYALWIPDLFMKRVETNGDWSLMCPNDCPGLD 360
Query: 361 DCWGAEFEKLYTHYEREGKAKKVVQAQNLWFEILTSQIETGTPYMLFKDTCNRKSNQQNL 420
+CWG EFEKLY YE+EG+AK+VV+AQ LW+ I+ SQ ETGTPYML+KD CNRKSN+QNL
Sbjct: 361 ECWGEEFEKLYAKYEQEGRAKRVVKAQQLWYAIIESQTETGTPYMLYKDACNRKSNRQNL 420
Query: 421 GTIKSSNLCTEIIEYTSPTETAVCNLASIALPRFV 455
GTIK SNLCTEI+EYTS E AVCNLASIAL +V
Sbjct: 421 GTIKCSNLCTEIVEYTSADEVAVCNLASIALNMYV 455
Score = 1127 (401.8 bits), Expect = 9.4e-286, Sum P(2) = 9.4e-286
Identities = 218/374 (58%), Positives = 272/374 (72%)
Query: 441 TAVCNLASIALPRFVREKDVPVESHPSRIVGSRGSKNRFFDFEKLAEVTAIVTENLNKII 500
T C+ + + +V V + S + + R FDF+KLA VT ++ +NLNKII
Sbjct: 422 TIKCSNLCTEIVEYTSADEVAVCNLASIALNMYVTSERTFDFQKLASVTKVIVKNLNKII 481
Query: 501 DVNYYPVETARRSNLRHRPIGIGVQGLADTFILLGMAFESPEAQQLNKDIFETIYYHALK 560
D+NYYPV+ A SN RHRPIGIGVQGLAD FIL+ FES EAQ LN IFETIYY AL+
Sbjct: 482 DINYYPVKEAENSNKRHRPIGIGVQGLADAFILMRFPFESTEAQLLNTQIFETIYYAALE 541
Query: 561 TSSEIAAKEGPYETYHNSPVSKGILQPDMWNVIPSDRWDWGVLRDMISKNGVRNSLLVAP 620
+S E+AA+ GPY+TY PVSKGILQ DMW P+D WDW L++ I+ +GVRNSLL+AP
Sbjct: 542 SSCELAAEYGPYQTYAGCPVSKGILQYDMWEKTPTDLWDWAALKEKIANDGVRNSLLLAP 601
Query: 621 MPTASTSQILGNNECFEPYTSNIYSRRVLSGEFVVVNKHLLHDLTEMGIWSPTIKNKIIY 680
MPTAST+QILGNNE EPYTSNIY RRVLSGEF +VN HLL DLTE G+W+ +KN+II
Sbjct: 602 MPTASTAQILGNNESIEPYTSNIYHRRVLSGEFQIVNPHLLKDLTERGLWNEEMKNQIIA 661
Query: 681 DDGSVQKIPEIPEELKMIYKTVWEIKQMTLVDMAVDRGCYIDQSQSLNIHMDQPNFKKVT 740
+GS+Q IP IP++LK +YKTVWEI Q T++ MA DRG YIDQSQSLNIH+ +PN+ K+T
Sbjct: 662 QNGSIQTIPAIPDDLKELYKTVWEISQKTILKMAADRGAYIDQSQSLNIHIAEPNYGKLT 721
Query: 741 SLHFRTWSRGLKTGMYYLRSRAAADAIKFTVDTSVFKEKPEKPELVVDDETK---MAQVV 797
S+HF W +GLKTGMYYLR++ A+ I+FT++ KE +K D+ETK A +V
Sbjct: 722 SMHFYGWKQGLKTGMYYLRTKPGANPIQFTLNKEKLKET-QKTTSSEDEETKERNKAAMV 780
Query: 798 CSLTNREECMACGS 811
CSL NR EC+ CGS
Sbjct: 781 CSLENRHECLMCGS 794
>POMBASE|SPAC1F7.05 [details] [associations]
symbol:cdc22 "ribonucleoside reductase large subunit
Cdc22" species:4896 "Schizosaccharomyces pombe" [GO:0004748
"ribonucleoside-diphosphate reductase activity, thioredoxin
disulfide as acceptor" evidence=ISS;IMP] [GO:0005515 "protein
binding" evidence=IPI] [GO:0005524 "ATP binding" evidence=ISM]
[GO:0005737 "cytoplasm" evidence=IDA] [GO:0005829 "cytosol"
evidence=IDA] [GO:0005971 "ribonucleoside-diphosphate reductase
complex" evidence=IEA] [GO:0006213 "pyrimidine nucleoside metabolic
process" evidence=IC] [GO:0007090 "regulation of S phase of mitotic
cell cycle" evidence=IMP] [GO:0009212 "pyrimidine
deoxyribonucleoside triphosphate biosynthetic process" evidence=IC]
[GO:0009216 "purine deoxyribonucleoside triphosphate biosynthetic
process" evidence=IC] [GO:0009263 "deoxyribonucleotide biosynthetic
process" evidence=ISS] [GO:0042278 "purine nucleoside metabolic
process" evidence=IC] [GO:0090329 "regulation of DNA-dependent DNA
replication" evidence=IMP] InterPro:IPR000788 InterPro:IPR008926
InterPro:IPR013346 InterPro:IPR013509 Pfam:PF00317 Pfam:PF02867
PRINTS:PR01183 PROSITE:PS00089 UniPathway:UPA00326
PomBase:SPAC1F7.05 Pfam:PF03477 GO:GO:0005829 GO:GO:0005524
EMBL:CU329670 GenomeReviews:CU329670_GR GO:GO:0006260 GO:GO:0007090
GO:GO:0090329 GO:GO:0006213 GO:GO:0009263 KO:K10807 GO:GO:0042278
InterPro:IPR005144 PROSITE:PS51161 eggNOG:COG0209 GO:GO:0005971
GO:GO:0004748 SUPFAM:SSF48168 HOGENOM:HOG000057035 OMA:PQARNSN
TIGRFAMs:TIGR02506 OrthoDB:EOG480N4T EMBL:X65116 PIR:S34807
PIR:S62577 RefSeq:NP_594491.1 ProteinModelPortal:P36602 SMR:P36602
IntAct:P36602 STRING:P36602 PRIDE:P36602 EnsemblFungi:SPAC1F7.05.1
GeneID:2541695 KEGG:spo:SPAC1F7.05 NextBio:20802788 GO:GO:0009216
GO:GO:0009212 Uniprot:P36602
Length = 811
Score = 1646 (584.5 bits), Expect = 3.5e-280, Sum P(3) = 3.5e-280
Identities = 296/457 (64%), Positives = 370/457 (80%)
Query: 1 MYVVKRDGRQEAVHFDKITARLKKLSYGLSTEHCDPVLVSQKVCAGVYKGVTTSQLDELX 60
M+V KRDGRQE V FDKITAR+ +L YGL ++H DPV ++QKV +GVY GVTT +LD L
Sbjct: 1 MFVYKRDGRQEKVAFDKITARVSRLCYGLDSDHVDPVEITQKVISGVYPGVTTIELDNLA 60
Query: 61 XXXXXXXXXNHPDYASLAARIAVSNLHKNTKKSFSETIKDMYNHYNERSGLKAPLIADDI 120
HPDYA LAARIAVSNLHK T+K FS ++ ++++ N ++ AP+I+D I
Sbjct: 61 AETAATMTTKHPDYAILAARIAVSNLHKQTEKVFSTVVQQLHDYVNPKTDKPAPMISDKI 120
Query: 121 YEIIMKNAACLDSEIIXXXXXXXXXXXXKTLERSYLLKVQGKVVERPQHMLMRVSIGIHK 180
Y+I+MK+ LDS II KTLERSYLL++ GKV ERPQHM+MRV++GIH
Sbjct: 121 YDIVMKHKDELDSAIIYDRDFTYNFFGFKTLERSYLLRIDGKVAERPQHMIMRVAVGIHG 180
Query: 181 DDIDSAIKTYHMMSQRWFTHASPTLFNAGTPRPQLSSCFLVCMKDDSIEGIYETLKECAV 240
+DI++AI+TY++MSQR+FTHASPTLFNAGTPRPQLSSCFLV MKDDSIEGIY+TLK CA+
Sbjct: 181 EDIEAAIETYNLMSQRYFTHASPTLFNAGTPRPQLSSCFLVTMKDDSIEGIYDTLKMCAM 240
Query: 241 ISKSAGGIGVSVHNIRATGSYIRGTNGTSNGIVPMLRVFNDTARYVDQGGGKRKGAFAVY 300
ISK+AGGIG+++HNIRATGSYI GTNGTSNGIVPM+RV+N+TARYVDQGG KR GAFA Y
Sbjct: 241 ISKTAGGIGINIHNIRATGSYIAGTNGTSNGIVPMIRVYNNTARYVDQGGNKRPGAFAAY 300
Query: 301 LEPWHADIFEFLNLKKNHGKEEHRARDLFYALWVPDLFMERVQTNGQWSLFCPNEASGLA 360
LEPWHAD+ +FL L+K HG E+ RAR++FYALW+PDLFM+RV+ N QW+ FCPNEA GLA
Sbjct: 301 LEPWHADVMDFLELRKTHGNEDFRAREMFYALWIPDLFMQRVERNEQWTFFCPNEAPGLA 360
Query: 361 DCWGAEFEKLYTHYEREGKAKKVVQAQNLWFEILTSQIETGTPYMLFKDTCNRKSNQQNL 420
D WG EF LY YE+E + ++ + AQ +W+ IL SQ+ETG P+ML+KD+CNRKSNQ+N+
Sbjct: 361 DVWGDEFVALYEKYEKENRGRRSLPAQKVWYAILQSQVETGNPFMLYKDSCNRKSNQKNV 420
Query: 421 GTIKSSNLCTEIIEYTSPTETAVCNLASIALPRFVRE 457
GTI+ SNLCTEI+EY+SP E AVCNLAS+ALP F+++
Sbjct: 421 GTIRCSNLCTEIVEYSSPDEVAVCNLASVALPTFIKD 457
Score = 1039 (370.8 bits), Expect = 3.5e-280, Sum P(3) = 3.5e-280
Identities = 194/307 (63%), Positives = 241/307 (78%)
Query: 476 KNRFFDFEKLAEVTAIVTENLNKIIDVNYYPVETARRSNLRHRPIGIGVQGLADTFILLG 535
K+ ++F+KL +V +VT NLNKIIDVNYYPV ARRSN+RHRP+G+GVQGLAD F L
Sbjct: 456 KDGKYNFQKLHDVVKVVTRNLNKIIDVNYYPVPEARRSNMRHRPVGLGVQGLADAFFALR 515
Query: 536 MAFESPEAQQLNKDIFETIYYHALKTSSEIAAKEGPYETYHNSPVSKGILQPDMWNVIPS 595
+ FES A++LN IFETIY+ AL+ S EIA EG YE+Y SP S+GILQ DMWNV P+
Sbjct: 516 LPFESAGAKKLNIQIFETIYHAALEASCEIAQVEGTYESYEGSPASQGILQYDMWNVNPT 575
Query: 596 DRWDWGVLRDMISKNGVRNSLLVAPMPTASTSQILGNNECFEPYTSNIYSRRVLSGEFVV 655
D WDW L++ I+K+G+RNSLLVAPMPTASTSQILG NECFEPYTSN+Y RRVLSGEF +
Sbjct: 576 DLWDWAELKEKIAKHGIRNSLLVAPMPTASTSQILGFNECFEPYTSNMYQRRVLSGEFQI 635
Query: 656 VNKHLLHDLTEMGIWSPTIKNKIIYDDGSVQKIPEIPEELKMIYKTVWEIKQMTLVDMAV 715
VN LL DL E +W+ +KNK++ DGS+Q IPEIP++LK +YKTVWEI Q T++D A
Sbjct: 636 VNPWLLKDLVERDLWNEDMKNKLVMLDGSIQAIPEIPQDLKDLYKTVWEISQKTVIDYAA 695
Query: 716 DRGCYIDQSQSLNIHMDQPNFKKVTSLHFRTWSRGLKTGMYYLRSRAAADAIKFTVDTSV 775
DRG +IDQSQSLNIH+ P++ K+TS+HF W +GLKTGMYYLR+ AA+ AIKFTVD
Sbjct: 696 DRGPFIDQSQSLNIHLKDPSYGKITSMHFYGWKKGLKTGMYYLRTMAASAAIKFTVDPVA 755
Query: 776 FKEKPEK 782
+ + E+
Sbjct: 756 LRARNEE 762
Score = 49 (22.3 bits), Expect = 3.5e-280, Sum P(3) = 3.5e-280
Identities = 11/33 (33%), Positives = 18/33 (54%)
Query: 779 KPEKPELVVDDETKMAQVVCSLTNREECMACGS 811
+P K E+ + +E +A CS+ N E C C +
Sbjct: 782 EPTKEEIDIYNEKVLA---CSIKNPEACEMCSA 811
>ASPGD|ASPL0000074083 [details] [associations]
symbol:AN4380 species:162425 "Emericella nidulans"
[GO:0043173 "nucleotide salvage" evidence=RCA] [GO:0004748
"ribonucleoside-diphosphate reductase activity, thioredoxin
disulfide as acceptor" evidence=IEA;RCA] [GO:0009263
"deoxyribonucleotide biosynthetic process" evidence=IEA]
[GO:0090329 "regulation of DNA-dependent DNA replication"
evidence=IEA] [GO:0007090 "regulation of S phase of mitotic cell
cycle" evidence=IEA] [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0005634 "nucleus" evidence=IEA] [GO:0005829 "cytosol"
evidence=IEA] [GO:0005971 "ribonucleoside-diphosphate reductase
complex" evidence=IEA] [GO:0005524 "ATP binding" evidence=IEA]
[GO:0006260 "DNA replication" evidence=IEA] InterPro:IPR000788
InterPro:IPR008926 InterPro:IPR013346 InterPro:IPR013509
Pfam:PF00317 Pfam:PF02867 PRINTS:PR01183 PROSITE:PS00089
UniPathway:UPA00326 Pfam:PF03477 GO:GO:0005524 GO:GO:0006260
EMBL:BN001303 EMBL:AACD01000076 KO:K10807 InterPro:IPR005144
PROSITE:PS51161 eggNOG:COG0209 GO:GO:0005971 GO:GO:0004748
SUPFAM:SSF48168 HOGENOM:HOG000057035 TIGRFAMs:TIGR02506 OMA:YKYGVKT
OrthoDB:EOG480N4T RefSeq:XP_661984.1 ProteinModelPortal:Q5B500
SMR:Q5B500 STRING:Q5B500 EnsemblFungi:CADANIAT00006078
GeneID:2872173 KEGG:ani:AN4380.2 Uniprot:Q5B500
Length = 865
Score = 1631 (579.2 bits), Expect = 5.2e-277, Sum P(3) = 5.2e-277
Identities = 298/449 (66%), Positives = 366/449 (81%)
Query: 7 DGRQEAVHFDKITARLKKLSYGLSTEHCDPVLVSQKVCAGVYKGVTTSQLDELXXXXXXX 66
DGR+E V FDKITAR+ +L YGL EH D ++QKV +GVY+GVTT +LD L
Sbjct: 21 DGRKERVQFDKITARVSRLCYGLDPEHVDAAAITQKVISGVYQGVTTVELDNLAAETAAY 80
Query: 67 XXXNHPDYASLAARIAVSNLHKNTKKSFSETIKDMYNHYNERSGLKAPLIADDIYEIIMK 126
HPDYA LAARIAVSNLHK TKK FS I D+Y++ N ++ AP+I+ + YEI+MK
Sbjct: 81 MTVTHPDYAILAARIAVSNLHKQTKKQFSLVISDLYHYVNPKNKKPAPMISKETYEIVMK 140
Query: 127 NAACLDSEIIXXXXXXXXXXXXKTLERSYLLKVQGKVVERPQHMLMRVSIGIHKDDIDSA 186
+A L+S I+ KTLERSYLL++ GK+ ERPQH+LMRV++GIH +DI+ A
Sbjct: 141 HAEELNSAIVYDRDFNYNFFGFKTLERSYLLRLDGKIAERPQHLLMRVAVGIHGNDIERA 200
Query: 187 IKTYHMMSQRWFTHASPTLFNAGTPRPQLSSCFLVCMKDDSIEGIYETLKECAVISKSAG 246
I+TY++MSQ++FTHASPTLFNAGTP+PQL+SCFLV MK+DSI+GIY+TLK CA+ISK+AG
Sbjct: 201 IETYNLMSQKYFTHASPTLFNAGTPQPQLASCFLVDMKEDSIDGIYDTLKTCAMISKTAG 260
Query: 247 GIGVSVHNIRATGSYIRGTNGTSNGIVPMLRVFNDTARYVDQGGGKRKGAFAVYLEPWHA 306
GIG++VH IRATGSYI GTNG+SNGIVPMLRVFN+TARYVDQGG KR GAFA+YLEPWHA
Sbjct: 261 GIGLNVHRIRATGSYIAGTNGSSNGIVPMLRVFNNTARYVDQGGNKRPGAFAIYLEPWHA 320
Query: 307 DIFEFLNLKKNHGKEEHRARDLFYALWVPDLFMERVQTNGQWSLFCPNEASGLADCWGAE 366
D+FEFL+L+KNHGKEE RARDLFYALW PDLFM+RV+ NG W+LFCPNEA GLAD +G E
Sbjct: 321 DVFEFLDLRKNHGKEEVRARDLFYALWTPDLFMKRVEANGDWTLFCPNEAPGLADVYGDE 380
Query: 367 FEKLYTHYEREGKAKKVVQAQNLWFEILTSQIETGTPYMLFKDTCNRKSNQQNLGTIKSS 426
F+ LY YE+EG+ ++ ++AQ LW+ IL +Q ETG P+ML+KD CN+KSNQ+NLGTI+SS
Sbjct: 381 FDALYEQYEKEGRGRRTIKAQKLWYAILEAQTETGNPFMLYKDACNKKSNQKNLGTIRSS 440
Query: 427 NLCTEIIEYTSPTETAVCNLASIALPRFV 455
NLCTEIIEYT+P E AVCNLAS+ALP FV
Sbjct: 441 NLCTEIIEYTAPDEVAVCNLASLALPTFV 469
Score = 1018 (363.4 bits), Expect = 5.2e-277, Sum P(3) = 5.2e-277
Identities = 192/312 (61%), Positives = 236/312 (75%)
Query: 466 PSRIVGSRGSKNRFFDFEKLAEVTAIVTENLNKIIDVNYYPVETARRSNLRHRPIGIGVQ 525
P+ + SRG +DF KL EV ++ NLNKIID+NYYPV A++SN RHRPI +GV
Sbjct: 466 PTFVDASRGE----YDFGKLHEVVQVLVRNLNKIIDINYYPVPEAKKSNFRHRPIALGVN 521
Query: 526 GLADTFILLGMAFESPEAQQLNKDIFETIYYHALKTSSEIAAKEGPYETYHNSPVSKGIL 585
GLAD F+ L + F+S EA+QLN IFETIY+ AL SS +A ++GPYE+Y SPVS+GIL
Sbjct: 522 GLADAFLALRLPFDSAEAKQLNIQIFETIYHAALTASSNLAKEDGPYESYEGSPVSQGIL 581
Query: 586 QPDMWNVIPSDRWDWGVLRDMISKNGVRNSLLVAPMPTASTSQILGNNECFEPYTSNIYS 645
Q DMW P+D WDW L+ I++ GVRNSLLVAPMPTASTSQILG NECFEPYTSNIYS
Sbjct: 582 QYDMWERTPTDLWDWDALKAKIAQTGVRNSLLVAPMPTASTSQILGFNECFEPYTSNIYS 641
Query: 646 RRVLSGEFVVVNKHLLHDLTEMGIWSPTIKNKIIYDDGSVQKIPEIPEELKMIYKTVWEI 705
RRVL+GEF VVN LL DL ++G+WS +KN+II + GSVQ IP IP+++K +YKTVWEI
Sbjct: 642 RRVLAGEFQVVNPWLLKDLVDLGLWSDNMKNRIIAEGGSVQNIPNIPDDIKALYKTVWEI 701
Query: 706 KQMTLVDMAVDRGCYIDQSQSLNIHMDQPNFKKVTSLHFRTWSRGLKTGMYYLRSRAAAD 765
Q +++MA DRG YIDQSQSLNIH+ +P K+TS+HF W GLKTGMYYLR+ AA+
Sbjct: 702 SQRRILEMAADRGAYIDQSQSLNIHLKEPTMGKITSMHFAGWKMGLKTGMYYLRTMAASA 761
Query: 766 AIKFTVDTSVFK 777
I+FTVD K
Sbjct: 762 PIQFTVDQEQLK 773
Score = 55 (24.4 bits), Expect = 5.2e-277, Sum P(3) = 5.2e-277
Identities = 14/39 (35%), Positives = 21/39 (53%)
Query: 771 VDTSVFKEKPEKPELVVDDETKMAQVVCSLTNREECMAC 809
VDTS ++K +P K+ Q CS+ N+E C+ C
Sbjct: 827 VDTSDEEKKEGEPSEADIYSQKVLQ--CSIENKEACIMC 863
Score = 37 (18.1 bits), Expect = 2.6e-169, Sum P(2) = 2.6e-169
Identities = 7/13 (53%), Positives = 11/13 (84%)
Query: 637 EPYTSNIYSRRVL 649
EP ++IYS++VL
Sbjct: 838 EPSEADIYSQKVL 850
>FB|FBgn0011703 [details] [associations]
symbol:RnrL "Ribonucleoside diphosphate reductase large
subunit" species:7227 "Drosophila melanogaster" [GO:0005971
"ribonucleoside-diphosphate reductase complex" evidence=ISS]
[GO:0004748 "ribonucleoside-diphosphate reductase activity,
thioredoxin disulfide as acceptor" evidence=ISS;NAS] [GO:0006260
"DNA replication" evidence=IEA;NAS] [GO:0055114
"oxidation-reduction process" evidence=IEA] [GO:0005524 "ATP
binding" evidence=IEA] [GO:0006919 "activation of cysteine-type
endopeptidase activity involved in apoptotic process" evidence=IMP]
[GO:0042246 "tissue regeneration" evidence=IMP] InterPro:IPR000788
InterPro:IPR008926 InterPro:IPR013346 InterPro:IPR013509
Pfam:PF00317 Pfam:PF02867 PRINTS:PR01183 PROSITE:PS00089
UniPathway:UPA00326 Pfam:PF03477 GO:GO:0005524 EMBL:AE014134
GO:GO:0006260 GO:GO:0006919 GO:GO:0042246 GO:GO:0009263 KO:K10807
InterPro:IPR005144 PROSITE:PS51161 eggNOG:COG0209 GO:GO:0005971
GO:GO:0004748 SUPFAM:SSF48168 TIGRFAMs:TIGR02506
GeneTree:ENSGT00390000001372 OMA:YKYGVKT EMBL:AF132143
EMBL:AY119149 EMBL:U09369 RefSeq:NP_477027.1 UniGene:Dm.3216
ProteinModelPortal:P48591 SMR:P48591 DIP:DIP-19582N
MINT:MINT-829510 STRING:P48591 PaxDb:P48591
EnsemblMetazoa:FBtr0080059 GeneID:34392 KEGG:dme:Dmel_CG5371
CTD:34392 FlyBase:FBgn0011703 InParanoid:P48591 OrthoDB:EOG4XKSNZ
PhylomeDB:P48591 GenomeRNAi:34392 NextBio:788275 Bgee:P48591
GermOnline:CG5371 Uniprot:P48591
Length = 812
Score = 1610 (571.8 bits), Expect = 1.5e-276, Sum P(2) = 1.5e-276
Identities = 296/455 (65%), Positives = 365/455 (80%)
Query: 1 MYVVKRDGRQEAVHFDKITARLKKLSYGLSTEHCDPVLVSQKVCAGVYKGVTTSQLDELX 60
+YV+KRDGRQE VHFDKIT+R++KL Y L+ + DPV ++ +V G+Y GVTT +LD L
Sbjct: 12 LYVIKRDGRQEEVHFDKITSRIQKLCYNLNMDFVDPVTITLQVINGLYCGVTTQELDNLA 71
Query: 61 XXXXXXXXXNHPDYASLAARIAVSNLHKNTKKSFSETIKDMYNHYNERSGLKAPLIADDI 120
NHPDYA LAARIAVSNLHK TKK+FS+ +D+YNH N+ + K PL+++
Sbjct: 72 AEIAAGLTCNHPDYAILAARIAVSNLHKETKKAFSDVFEDLYNHVNKETNQKVPLVSEFH 131
Query: 121 YEIIMKNAACLDSEIIXXXXXXXXXXXXKTLERSYLLKVQGKVVERPQHMLMRVSIGIHK 180
Y ++ KNA L+S II KTLERSYLLK GK+ ERPQHMLMRV+IGIH
Sbjct: 132 YNVVKKNATRLNSSIIYDRDFGYNYFGFKTLERSYLLKRNGKIAERPQHMLMRVAIGIHG 191
Query: 181 DDIDSAIKTYHMMSQRWFTHASPTLFNAGTPRPQLSSCFLVCMKDDSIEGIYETLKECAV 240
+DID+A++TY+++S+R+FTHASPTLF A T RPQLSSCFL+ M DSIEGI++++++CA+
Sbjct: 192 EDIDAAVETYNLLSERYFTHASPTLFAAATNRPQLSSCFLLTMTADSIEGIFKSVEQCAM 251
Query: 241 ISKSAGGIGVSVHNIRATGSYIRGTNGTSNGIVPMLRVFNDTARYVDQGGGKRKGAFAVY 300
ISKSAGGIG++VH IRA G+ I GTNGTSNG+VPMLRVFN+ ARYVDQGGGKR GAFA+Y
Sbjct: 252 ISKSAGGIGLNVHCIRAKGTSICGTNGTSNGLVPMLRVFNNVARYVDQGGGKRPGAFAIY 311
Query: 301 LEPWHADIFEFLNLKKNHGKEEHRARDLFYALWVPDLFMERVQTNGQWSLFCPNEASGLA 360
LEPWH+D+FEFL LKKN GKEE+RARDLFYALW+PDLFM+RV+ NG WSL CP++ GL
Sbjct: 312 LEPWHSDVFEFLELKKNTGKEENRARDLFYALWIPDLFMKRVEANGDWSLMCPHKCPGLH 371
Query: 361 DCWGAEFEKLYTHYEREGKAKKVVQAQNLWFEILTSQIETGTPYMLFKDTCNRKSNQQNL 420
D WG EFEKLY YE+EG+A + V+AQ+LWF I+ +Q+ETG PYMLFKD CNRKSNQQN+
Sbjct: 372 DVWGDEFEKLYEKYEQEGRANRTVKAQSLWFAIIEAQVETGNPYMLFKDACNRKSNQQNV 431
Query: 421 GTIKSSNLCTEIIEYTSPTETAVCNLASIALPRFV 455
GTIK SNLCTEI+EY++P E AVCNLASIAL FV
Sbjct: 432 GTIKCSNLCTEIVEYSAPDEIAVCNLASIALNMFV 466
Score = 1072 (382.4 bits), Expect = 1.5e-276, Sum P(2) = 1.5e-276
Identities = 205/343 (59%), Positives = 258/343 (75%)
Query: 480 FDFEKLAEVTAIVTENLNKIIDVNYYPVETARRSNLRHRPIGIGVQGLADTFILLGMAFE 539
+DF+KL EVT IVT+NLNKIID+NYYP+ AR+SNLRHRP+GIG+QG AD IL+ +E
Sbjct: 472 YDFKKLKEVTKIVTKNLNKIIDINYYPLPEARKSNLRHRPVGIGIQGFADALILMRFPYE 531
Query: 540 SPEAQQLNKDIFETIYYHALKTSSEIAAKEGPYETYHNSPVSKGILQPDMWNVIPSDRWD 599
S EA LN+ IFETIYY AL+ S E+A EGPYETY SPVSKGILQ DMW+ +P++ WD
Sbjct: 532 SEEAGLLNQQIFETIYYGALEASCELAQTEGPYETYEGSPVSKGILQYDMWDKVPTNLWD 591
Query: 600 WGVLRDMISKNGVRNSLLVAPMPTASTSQILGNNECFEPYTSNIYSRRVLSGEFVVVNKH 659
W L++ I +GVRNSLLVAPMPTAST+QI+GNNE FEPYT+NIY+RRVLSGEF VVN H
Sbjct: 592 WQKLKESIRMHGVRNSLLVAPMPTASTAQIMGNNESFEPYTTNIYTRRVLSGEFQVVNHH 651
Query: 660 LLHDLTEMGIWSPTIKNKIIYDDGSVQKIPEIPEELKMIYKTVWEIKQMTLVDMAVDRGC 719
LL DLTE+ +W +KN+II GS+Q I IP +++ +YKTVWEI + + MA DRG
Sbjct: 652 LLRDLTELDLWDDDMKNQIISSRGSIQNIETIPPKVRDLYKTVWEISVKSTIKMAADRGA 711
Query: 720 YIDQSQSLNIHMDQPNFKKVTSLHFRTWSRGLKTGMYYLRSRAAADAIKFTVD------- 772
+IDQSQS NIH+ +PN+ K+TS+HF +W GLKTGMYYLR++ AA+AI+FTV+
Sbjct: 712 FIDQSQSFNIHVAEPNYGKLTSIHFYSWKAGLKTGMYYLRTKPAANAIQFTVNKKQGAVS 771
Query: 773 ----TSVFKEKPEKPELVVDDETKMAQVVCSLTNREECMACGS 811
+ P+K E D E KMA +VCSL N++ CM+CGS
Sbjct: 772 MNGQNGTAEGSPQKYE--EDRERKMADMVCSLENKDACMSCGS 812
>UNIPROTKB|Q9UW15 [details] [associations]
symbol:rnr-1 "Ribonucleoside-diphosphate reductase large
chain" species:367110 "Neurospora crassa OR74A" [GO:0004748
"ribonucleoside-diphosphate reductase activity, thioredoxin
disulfide as acceptor" evidence=ISS] [GO:0009263
"deoxyribonucleotide biosynthetic process" evidence=ISS]
InterPro:IPR000788 InterPro:IPR008926 InterPro:IPR013346
InterPro:IPR013509 Pfam:PF00317 Pfam:PF02867 PRINTS:PR01183
PROSITE:PS00089 UniPathway:UPA00326 Pfam:PF03477 GO:GO:0005524
GO:GO:0006260 EMBL:AABX02000008 GO:GO:0009263 KO:K10807
InterPro:IPR005144 PROSITE:PS51161 eggNOG:COG0209 GO:GO:0005971
GO:GO:0004748 SUPFAM:SSF48168 HOGENOM:HOG000057035
TIGRFAMs:TIGR02506 EMBL:AF171697 EMBL:AL390092 PIR:T43711
RefSeq:XP_956818.1 UniGene:Ncr.20426 ProteinModelPortal:Q9UW15
SMR:Q9UW15 STRING:Q9UW15 EnsemblFungi:EFNCRT00000002608
GeneID:3872956 KEGG:ncr:NCU03539 OMA:ETIYHAS OrthoDB:EOG480N4T
Uniprot:Q9UW15
Length = 929
Score = 1642 (583.1 bits), Expect = 3.1e-276, Sum P(2) = 3.1e-276
Identities = 303/455 (66%), Positives = 365/455 (80%)
Query: 1 MYVVKRDGRQEAVHFDKITARLKKLSYGLSTEHCDPVLVSQKVCAGVYKGVTTSQLDELX 60
MYV KRDGRQE V FDKITAR+ +L YGL H DPV ++QKV +GVY GVTT+QLD+L
Sbjct: 1 MYVKKRDGRQERVQFDKITARVSRLCYGLDMNHVDPVAITQKVISGVYGGVTTAQLDDLA 60
Query: 61 XXXXXXXXXNHPDYASLAARIAVSNLHKNTKKSFSETIKDMYNHYNERSGLKAPLIADDI 120
HPDYA LAARIAVSNLHK TKK +S I ++YN+ N R+G +P+IA D+
Sbjct: 61 AETAAYMTVTHPDYAILAARIAVSNLHKQTKKQWSLVISELYNYVNPRTGKHSPMIAKDV 120
Query: 121 YEIIMKNAACLDSEIIXXXXXXXXXXXXKTLERSYLLKVQGKVVERPQHMLMRVSIGIHK 180
YE +M++ DS I+ KTLERSYLLK+ G++ ERPQHM+MRV++GI
Sbjct: 121 YECVMRHKDEFDSAIVYDRDFNYQYFGFKTLERSYLLKLDGQIAERPQHMIMRVAVGIWG 180
Query: 181 DDIDSAIKTYHMMSQRWFTHASPTLFNAGTPRPQLSSCFLVCMKDDSIEGIYETLKECAV 240
DD++ I+TY++MS + FTHASPTLFNAGTP+PQLSSCFLV MK+DSIEGIY+TLK CA+
Sbjct: 181 DDVERVIETYNLMSLKTFTHASPTLFNAGTPQPQLSSCFLVDMKEDSIEGIYDTLKTCAM 240
Query: 241 ISKSAGGIGVSVHNIRATGSYIRGTNGTSNGIVPMLRVFNDTARYVDQGGGKRKGAFAVY 300
ISK AGGIG+++H IRATGSYI GTNGTSNGIVPMLRVFN+TARYVDQGG KR GAFA+Y
Sbjct: 241 ISKMAGGIGLNIHRIRATGSYIAGTNGTSNGIVPMLRVFNNTARYVDQGGNKRPGAFAIY 300
Query: 301 LEPWHADIFEFLNLKKNHGKEEHRARDLFYALWVPDLFMERVQTNGQWSLFCPNEASGLA 360
LEPWHAD+FEFL+L+KNHGKEE RARDLF ALW+PDLFM+RV+ NGQW+L CP+E GLA
Sbjct: 301 LEPWHADVFEFLDLRKNHGKEEVRARDLFLALWIPDLFMKRVEQNGQWTLMCPHECPGLA 360
Query: 361 DCWGAEFEKLYTHYEREGKAKKVVQAQNLWFEILTSQIETGTPYMLFKDTCNRKSNQQNL 420
D +G EFE LY YE+EGK +K V+AQ LW+ IL +Q ETG P+ML+KD CNRKSNQ+NL
Sbjct: 361 DVYGDEFEALYEKYEKEGKGRKTVKAQKLWYAILEAQTETGNPFMLYKDACNRKSNQKNL 420
Query: 421 GTIKSSNLCTEIIEYTSPTETAVCNLASIALPRFV 455
GTI+SSNLCTEIIEY++P E AVCNLAS+AL F+
Sbjct: 421 GTIRSSNLCTEIIEYSAPDEVAVCNLASLALSAFI 455
Score = 1037 (370.1 bits), Expect = 3.1e-276, Sum P(2) = 3.1e-276
Identities = 193/307 (62%), Positives = 235/307 (76%)
Query: 476 KNRFFDFEKLAEVTAIVTENLNKIIDVNYYPVETARRSNLRHRPIGIGVQGLADTFILLG 535
+N +DF+KL EVT +V NLNKIID+N+YPV+ A SN+RHRPIG+GVQGLAD F+ L
Sbjct: 458 ENASYDFKKLHEVTQVVVRNLNKIIDINHYPVKEAHNSNMRHRPIGVGVQGLADAFLALR 517
Query: 536 MAFESPEAQQLNKDIFETIYYHALKTSSEIAAKEGPYETYHNSPVSKGILQPDMWNVIPS 595
M F+S A +LN IFETIY+ AL S ++A ++GPY TY SPVS+GILQ DMWNV P+
Sbjct: 518 MPFDSDAASKLNIQIFETIYHAALTASCQLAKEQGPYATYEGSPVSQGILQYDMWNVTPT 577
Query: 596 DRWDWGVLRDMISKNGVRNSLLVAPMPTASTSQILGNNECFEPYTSNIYSRRVLSGEFVV 655
+ WDW L+ I K GVRNSLL+APMPTASTSQILGNNECFEPYTSNIY RRVL+GEF V
Sbjct: 578 NLWDWTALKADIKKYGVRNSLLLAPMPTASTSQILGNNECFEPYTSNIYQRRVLAGEFQV 637
Query: 656 VNKHLLHDLTEMGIWSPTIKNKIIYDDGSVQKIPEIPEELKMIYKTVWEIKQMTLVDMAV 715
VN LL DL EMG+WS +KN+II + GS+Q I IP ++K +YKTVWEI Q T+V MA
Sbjct: 638 VNPWLLRDLVEMGLWSDAMKNRIIAEGGSIQNIQSIPNDIKALYKTVWEISQRTIVKMAA 697
Query: 716 DRGCYIDQSQSLNIHMDQPNFKKVTSLHFRTWSRGLKTGMYYLRSRAAADAIKFTVDTSV 775
DRG +IDQSQSLNIHM +P K+TS+HF W GLKTGMYYLR++AAA I+FTVD
Sbjct: 698 DRGAFIDQSQSLNIHMREPTMGKITSMHFAGWKMGLKTGMYYLRTQAAAQPIQFTVDQEA 757
Query: 776 FKEKPEK 782
+ ++
Sbjct: 758 LRATDDR 764
>CGD|CAL0001524 [details] [associations]
symbol:RNR1 species:5476 "Candida albicans" [GO:0004748
"ribonucleoside-diphosphate reductase activity, thioredoxin
disulfide as acceptor" evidence=IEA;NAS] [GO:0005829 "cytosol"
evidence=IEA] [GO:0005971 "ribonucleoside-diphosphate reductase
complex" evidence=IEA] [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0030447 "filamentous growth" evidence=IMP]
[GO:0009263 "deoxyribonucleotide biosynthetic process"
evidence=IEA] [GO:0090329 "regulation of DNA-dependent DNA
replication" evidence=IEA] [GO:0055114 "oxidation-reduction
process" evidence=IEA] [GO:0007090 "regulation of S phase of
mitotic cell cycle" evidence=IEA] [GO:0009267 "cellular response to
starvation" evidence=IMP] [GO:0036170 "filamentous growth of a
population of unicellular organisms in response to starvation"
evidence=IMP] [GO:0036180 "filamentous growth of a population of
unicellular organisms in response to biotic stimulus" evidence=IMP]
[GO:0071216 "cellular response to biotic stimulus" evidence=IMP]
InterPro:IPR000788 InterPro:IPR008926 InterPro:IPR013346
InterPro:IPR013509 Pfam:PF00317 Pfam:PF02867 PRINTS:PR01183
PROSITE:PS00089 UniPathway:UPA00326 CGD:CAL0001524 Pfam:PF03477
GO:GO:0005524 GO:GO:0071216 GO:GO:0036180 GO:GO:0006260
GO:GO:0009267 GO:GO:0036170 EMBL:AACQ01000088 EMBL:AACQ01000087
KO:K10807 InterPro:IPR005144 PROSITE:PS51161 eggNOG:COG0209
GO:GO:0005971 GO:GO:0004748 SUPFAM:SSF48168 TIGRFAMs:TIGR02506
RefSeq:XP_715255.1 RefSeq:XP_715320.1 ProteinModelPortal:Q5A0N3
SMR:Q5A0N3 STRING:Q5A0N3 GeneID:3642989 GeneID:3643046
KEGG:cal:CaO19.13201 KEGG:cal:CaO19.5779 Uniprot:Q5A0N3
Length = 854
Score = 2581 (913.6 bits), Expect = 3.7e-271, Sum P(2) = 3.7e-271
Identities = 474/775 (61%), Positives = 611/775 (78%)
Query: 1 MYVVKRDGRQEAVHFDKITARLKKLSYGLSTEHCDPVLVSQKVCAGVYKGVTTSQLDELX 60
MYV KRDGR+E V FDKITAR+++L YGL+ H +PV ++QKV +GVY+GVTT +LD L
Sbjct: 1 MYVYKRDGRKEPVRFDKITARVQRLCYGLNPNHVEPVAITQKVISGVYQGVTTIELDNLA 60
Query: 61 XXXXXXXXXNHPDYASLAARIAVSNLHKNTKKSFSETIKDMYNHYNERSGLKAPLIADDI 120
HPDYA LAARIAVSNLHK T K +S+ KD+Y + N ++GL +P+I+ +
Sbjct: 61 AEIAATMTTIHPDYAVLAARIAVSNLHKQTTKQYSKVSKDLYEYINPKTGLHSPMISKET 120
Query: 121 YEIIMKNAACLDSEIIXXXXXXXXXXXXKTLERSYLLKVQGKVVERPQHMLMRVSIGIHK 180
Y+IIM++ L+S I+ KTLERSYLL++ GKV ERPQH++MRV++GIH
Sbjct: 121 YDIIMEHEDELNSAIVYDRDFNYNYFGFKTLERSYLLRINGKVAERPQHLIMRVAVGIHG 180
Query: 181 DDIDSAIKTYHMMSQRWFTHASPTLFNAGTPRPQLSSCFLVCMKDDSIEGIYETLKECAV 240
+DI I+TY++MSQR+FTH SP LFNAGTPRPQ+SSCFL+ MKDDSIEGIY+TLK CA+
Sbjct: 181 NDIPRVIETYNLMSQRFFTHGSPCLFNAGTPRPQMSSCFLLAMKDDSIEGIYDTLKSCAL 240
Query: 241 ISKSAGGIGVSVHNIRATGSYIRGTNGTSNGIVPMLRVFNDTARYVDQGGGKRKGAFAVY 300
ISKSAGGIG+ +HNIR+TG+YI GTNGTSNGI+PM+RVFN+TARYVDQGG KR GAFA+Y
Sbjct: 241 ISKSAGGIGLHIHNIRSTGAYIAGTNGTSNGIIPMVRVFNNTARYVDQGGNKRPGAFALY 300
Query: 301 LEPWHADIFEFLNLKKNHGKEEHRARDLFYALWVPDLFMERVQTNGQWSLFCPNEASGLA 360
LEPWH+DIF+F++++KNHGKEE RARDLF ALW+PDLFM+RV+ NG W+LF PNEA GLA
Sbjct: 301 LEPWHSDIFDFIDIRKNHGKEEIRARDLFPALWIPDLFMKRVEQNGDWTLFSPNEAPGLA 360
Query: 361 DCWGAEFEKLYTHYEREGKAKKVVQAQNLWFEILTSQIETGTPYMLFKDTCNRKSNQQNL 420
D +G EFE+LYT YE+E + ++ ++AQ LW+ IL +Q ETGTP+ML+KD+CN KSNQ+NL
Sbjct: 361 DVYGDEFEELYTKYEKENRGRQTIKAQKLWYAILGAQTETGTPFMLYKDSCNNKSNQKNL 420
Query: 421 GTIKSSNLCTEIIEYTSPTETAVCNLASIALPRFVREKDVPVESHPSRIVGSRGSKNRFF 480
G IKSSNLC EI+EY++P E AVCNLASIALP FV E D K+ ++
Sbjct: 421 GIIKSSNLCCEIVEYSAPDEVAVCNLASIALPSFV-END---------------EKSTWY 464
Query: 481 DFEKLAEVTAIVTENLNKIIDVNYYPVETARRSNLRHRPIGIGVQGLADTFILLGMAFES 540
+F+KL +VT +VT NLN++ID N+YPV A RSN+RHRPI +GVQGLAD F+ L + F+S
Sbjct: 465 NFDKLHQVTKVVTRNLNRVIDRNHYPVPEAERSNMRHRPIALGVQGLADAFMELRLPFDS 524
Query: 541 PEAQQLNKDIFETIYYHALKTSSEIAAKEGPYETYHNSPVSKGILQPDMWNVIPSDRWDW 600
EA++LN IFETIY+ A++ S E+A +EG YETY SP S+G+LQ D+WN P++ WDW
Sbjct: 525 QEARELNIQIFETIYHAAVEASIELAKEEGAYETYPGSPASQGLLQFDLWNRKPTELWDW 584
Query: 601 GVLRDMISKNGVRNSLLVAPMPTASTSQILGNNECFEPYTSNIYSRRVLSGEFVVVNKHL 660
L+ ++K+G+RNSLLVAPMPTASTSQILGNNECFEPYTSNIYSRRVL+GEF +VN +L
Sbjct: 585 DTLKQDLAKHGMRNSLLVAPMPTASTSQILGNNECFEPYTSNIYSRRVLAGEFQIVNPYL 644
Query: 661 LHDLTEMGIWSPTIKNKIIYDDGSVQKIPEIPEELKMIYKTVWEIKQMTLVDMAVDRGCY 720
L DL ++G+W+ +K+ II ++GS+Q +P IP+E+K +YKTVWEI Q ++DMA DR +
Sbjct: 645 LKDLVDLGVWNDAMKSSIIANNGSIQALPNIPDEIKALYKTVWEISQKHIIDMAADRAAF 704
Query: 721 IDQSQSLNIHMDQPNFKKVTSLHFRTWSRGLKTGMYYLRSRAAADAIKFTVDTSV 775
IDQSQSLNIH+ P K+TS+HF W +GLKTGMYYLR++AA+ AI+FT+D +
Sbjct: 705 IDQSQSLNIHIKDPTMGKLTSMHFYGWKKGLKTGMYYLRTQAASAAIQFTIDQKI 759
Score = 50 (22.7 bits), Expect = 3.7e-271, Sum P(2) = 3.7e-271
Identities = 19/85 (22%), Positives = 35/85 (41%)
Query: 730 HMDQPNFKKVTSLHFRTWSRGLKTGMYYLRSRAAADAIKFTVDTSVFKE--KPEKPELV- 786
++D+ N KK + R S Y S D + E KP + + +
Sbjct: 769 NLDKLNIKKYVNKG-RVESENTSDAPYKSPSTEPTSLESSVADLKIKDEGEKPAEDKTIE 827
Query: 787 -VDDETKMAQVV-CSLTNREECMAC 809
++++ A+V+ C++ N E C C
Sbjct: 828 ELENDIYSAKVIACAIDNPESCTMC 852
>UNIPROTKB|Q5A0N3 [details] [associations]
symbol:RNR1 "Ribonucleoside-diphosphate reductase"
species:237561 "Candida albicans SC5314" [GO:0004748
"ribonucleoside-diphosphate reductase activity, thioredoxin
disulfide as acceptor" evidence=NAS] [GO:0009267 "cellular response
to starvation" evidence=IMP] [GO:0030447 "filamentous growth"
evidence=IMP] [GO:0036170 "filamentous growth of a population of
unicellular organisms in response to starvation" evidence=IMP]
[GO:0036180 "filamentous growth of a population of unicellular
organisms in response to biotic stimulus" evidence=IMP] [GO:0071216
"cellular response to biotic stimulus" evidence=IMP]
InterPro:IPR000788 InterPro:IPR008926 InterPro:IPR013346
InterPro:IPR013509 Pfam:PF00317 Pfam:PF02867 PRINTS:PR01183
PROSITE:PS00089 UniPathway:UPA00326 CGD:CAL0001524 Pfam:PF03477
GO:GO:0005524 GO:GO:0071216 GO:GO:0036180 GO:GO:0006260
GO:GO:0009267 GO:GO:0036170 EMBL:AACQ01000088 EMBL:AACQ01000087
KO:K10807 InterPro:IPR005144 PROSITE:PS51161 eggNOG:COG0209
GO:GO:0005971 GO:GO:0004748 SUPFAM:SSF48168 TIGRFAMs:TIGR02506
RefSeq:XP_715255.1 RefSeq:XP_715320.1 ProteinModelPortal:Q5A0N3
SMR:Q5A0N3 STRING:Q5A0N3 GeneID:3642989 GeneID:3643046
KEGG:cal:CaO19.13201 KEGG:cal:CaO19.5779 Uniprot:Q5A0N3
Length = 854
Score = 2581 (913.6 bits), Expect = 3.7e-271, Sum P(2) = 3.7e-271
Identities = 474/775 (61%), Positives = 611/775 (78%)
Query: 1 MYVVKRDGRQEAVHFDKITARLKKLSYGLSTEHCDPVLVSQKVCAGVYKGVTTSQLDELX 60
MYV KRDGR+E V FDKITAR+++L YGL+ H +PV ++QKV +GVY+GVTT +LD L
Sbjct: 1 MYVYKRDGRKEPVRFDKITARVQRLCYGLNPNHVEPVAITQKVISGVYQGVTTIELDNLA 60
Query: 61 XXXXXXXXXNHPDYASLAARIAVSNLHKNTKKSFSETIKDMYNHYNERSGLKAPLIADDI 120
HPDYA LAARIAVSNLHK T K +S+ KD+Y + N ++GL +P+I+ +
Sbjct: 61 AEIAATMTTIHPDYAVLAARIAVSNLHKQTTKQYSKVSKDLYEYINPKTGLHSPMISKET 120
Query: 121 YEIIMKNAACLDSEIIXXXXXXXXXXXXKTLERSYLLKVQGKVVERPQHMLMRVSIGIHK 180
Y+IIM++ L+S I+ KTLERSYLL++ GKV ERPQH++MRV++GIH
Sbjct: 121 YDIIMEHEDELNSAIVYDRDFNYNYFGFKTLERSYLLRINGKVAERPQHLIMRVAVGIHG 180
Query: 181 DDIDSAIKTYHMMSQRWFTHASPTLFNAGTPRPQLSSCFLVCMKDDSIEGIYETLKECAV 240
+DI I+TY++MSQR+FTH SP LFNAGTPRPQ+SSCFL+ MKDDSIEGIY+TLK CA+
Sbjct: 181 NDIPRVIETYNLMSQRFFTHGSPCLFNAGTPRPQMSSCFLLAMKDDSIEGIYDTLKSCAL 240
Query: 241 ISKSAGGIGVSVHNIRATGSYIRGTNGTSNGIVPMLRVFNDTARYVDQGGGKRKGAFAVY 300
ISKSAGGIG+ +HNIR+TG+YI GTNGTSNGI+PM+RVFN+TARYVDQGG KR GAFA+Y
Sbjct: 241 ISKSAGGIGLHIHNIRSTGAYIAGTNGTSNGIIPMVRVFNNTARYVDQGGNKRPGAFALY 300
Query: 301 LEPWHADIFEFLNLKKNHGKEEHRARDLFYALWVPDLFMERVQTNGQWSLFCPNEASGLA 360
LEPWH+DIF+F++++KNHGKEE RARDLF ALW+PDLFM+RV+ NG W+LF PNEA GLA
Sbjct: 301 LEPWHSDIFDFIDIRKNHGKEEIRARDLFPALWIPDLFMKRVEQNGDWTLFSPNEAPGLA 360
Query: 361 DCWGAEFEKLYTHYEREGKAKKVVQAQNLWFEILTSQIETGTPYMLFKDTCNRKSNQQNL 420
D +G EFE+LYT YE+E + ++ ++AQ LW+ IL +Q ETGTP+ML+KD+CN KSNQ+NL
Sbjct: 361 DVYGDEFEELYTKYEKENRGRQTIKAQKLWYAILGAQTETGTPFMLYKDSCNNKSNQKNL 420
Query: 421 GTIKSSNLCTEIIEYTSPTETAVCNLASIALPRFVREKDVPVESHPSRIVGSRGSKNRFF 480
G IKSSNLC EI+EY++P E AVCNLASIALP FV E D K+ ++
Sbjct: 421 GIIKSSNLCCEIVEYSAPDEVAVCNLASIALPSFV-END---------------EKSTWY 464
Query: 481 DFEKLAEVTAIVTENLNKIIDVNYYPVETARRSNLRHRPIGIGVQGLADTFILLGMAFES 540
+F+KL +VT +VT NLN++ID N+YPV A RSN+RHRPI +GVQGLAD F+ L + F+S
Sbjct: 465 NFDKLHQVTKVVTRNLNRVIDRNHYPVPEAERSNMRHRPIALGVQGLADAFMELRLPFDS 524
Query: 541 PEAQQLNKDIFETIYYHALKTSSEIAAKEGPYETYHNSPVSKGILQPDMWNVIPSDRWDW 600
EA++LN IFETIY+ A++ S E+A +EG YETY SP S+G+LQ D+WN P++ WDW
Sbjct: 525 QEARELNIQIFETIYHAAVEASIELAKEEGAYETYPGSPASQGLLQFDLWNRKPTELWDW 584
Query: 601 GVLRDMISKNGVRNSLLVAPMPTASTSQILGNNECFEPYTSNIYSRRVLSGEFVVVNKHL 660
L+ ++K+G+RNSLLVAPMPTASTSQILGNNECFEPYTSNIYSRRVL+GEF +VN +L
Sbjct: 585 DTLKQDLAKHGMRNSLLVAPMPTASTSQILGNNECFEPYTSNIYSRRVLAGEFQIVNPYL 644
Query: 661 LHDLTEMGIWSPTIKNKIIYDDGSVQKIPEIPEELKMIYKTVWEIKQMTLVDMAVDRGCY 720
L DL ++G+W+ +K+ II ++GS+Q +P IP+E+K +YKTVWEI Q ++DMA DR +
Sbjct: 645 LKDLVDLGVWNDAMKSSIIANNGSIQALPNIPDEIKALYKTVWEISQKHIIDMAADRAAF 704
Query: 721 IDQSQSLNIHMDQPNFKKVTSLHFRTWSRGLKTGMYYLRSRAAADAIKFTVDTSV 775
IDQSQSLNIH+ P K+TS+HF W +GLKTGMYYLR++AA+ AI+FT+D +
Sbjct: 705 IDQSQSLNIHIKDPTMGKLTSMHFYGWKKGLKTGMYYLRTQAASAAIQFTIDQKI 759
Score = 50 (22.7 bits), Expect = 3.7e-271, Sum P(2) = 3.7e-271
Identities = 19/85 (22%), Positives = 35/85 (41%)
Query: 730 HMDQPNFKKVTSLHFRTWSRGLKTGMYYLRSRAAADAIKFTVDTSVFKE--KPEKPELV- 786
++D+ N KK + R S Y S D + E KP + + +
Sbjct: 769 NLDKLNIKKYVNKG-RVESENTSDAPYKSPSTEPTSLESSVADLKIKDEGEKPAEDKTIE 827
Query: 787 -VDDETKMAQVV-CSLTNREECMAC 809
++++ A+V+ C++ N E C C
Sbjct: 828 ELENDIYSAKVIACAIDNPESCTMC 852
>DICTYBASE|DDB_G0284071 [details] [associations]
symbol:rnrA "ribonucleoside-diphosphate reductase"
species:44689 "Dictyostelium discoideum" [GO:0005515 "protein
binding" evidence=IPI] [GO:0055114 "oxidation-reduction process"
evidence=IEA] [GO:0006260 "DNA replication" evidence=IEA;ISS]
[GO:0005971 "ribonucleoside-diphosphate reductase complex"
evidence=IEA;ISS] [GO:0005524 "ATP binding" evidence=IEA]
[GO:0004748 "ribonucleoside-diphosphate reductase activity,
thioredoxin disulfide as acceptor" evidence=IEA;ISS] [GO:0009263
"deoxyribonucleotide biosynthetic process" evidence=ISS]
[GO:0009186 "deoxyribonucleoside diphosphate metabolic process"
evidence=ISS] [GO:0005737 "cytoplasm" evidence=IEA;ISS] [GO:0016491
"oxidoreductase activity" evidence=IEA] [GO:0008152 "metabolic
process" evidence=IEA] [GO:0003824 "catalytic activity"
evidence=IEA] [GO:0000166 "nucleotide binding" evidence=IEA]
InterPro:IPR000788 InterPro:IPR008926 InterPro:IPR013346
InterPro:IPR013509 Pfam:PF00317 Pfam:PF02867 PRINTS:PR01183
UniPathway:UPA00326 dictyBase:DDB_G0284071 Pfam:PF03477
GO:GO:0005524 GenomeReviews:CM000153_GR GO:GO:0006260
EMBL:AAFI02000063 GO:GO:0009263 KO:K10807 InterPro:IPR005144
PROSITE:PS51161 eggNOG:COG0209 GO:GO:0005971 GO:GO:0004748
SUPFAM:SSF48168 TIGRFAMs:TIGR02506 OMA:YKYGVKT RefSeq:XP_638726.1
HSSP:P21524 ProteinModelPortal:Q54Q71 SMR:Q54Q71 STRING:Q54Q71
EnsemblProtists:DDB0230075 GeneID:8624396 KEGG:ddi:DDB_G0284071
ProtClustDB:CLSZ2429164 GO:GO:0009186 Uniprot:Q54Q71
Length = 870
Score = 2596 (918.9 bits), Expect = 6.0e-270, P = 6.0e-270
Identities = 498/798 (62%), Positives = 612/798 (76%)
Query: 1 MYVVKRDGRQEAVHFDKITARLK---KLSYGLSTEHCDPVLVSQKVCAGVYKGVTTSQLD 57
MYVVKRDG +E V FDKIT+R+ ++ L+++ DP+ V+QKV +GV+ GV T++LD
Sbjct: 16 MYVVKRDGTKENVSFDKITSRISFLCEMEPKLNSDIVDPIEVAQKVVSGVFPGVKTTELD 75
Query: 58 ELXXXXXXXXXXNHPDYASLAARIAVSNLHKNTKKSFSETIKDMYNHYNERSGLKAPLIA 117
L HPDY LAARI+VSNLHK T KSF ET+K Y N +S L APL++
Sbjct: 76 NLAAETAAYMSTRHPDYGILAARISVSNLHKQTSKSFVETVKKQYEFINPKSNLLAPLVS 135
Query: 118 DDIYEIIMKNAACLDSEIIXXXXXXXXXXXXKTLERSYLLKVQGKVVERPQHMLMRVSIG 177
++YEI+MK+ L+S I KTLERSYL ++ GK+VERPQHMLMRVSIG
Sbjct: 136 KELYEIVMKHGERLESVIDYYRDFDYDFFGFKTLERSYLHRINGKIVERPQHMLMRVSIG 195
Query: 178 IHKDDIDSAIKTYHMMSQRWFTHASPTLFNAGTPRPQLSSCFLVCMKDDSIEGIYETLKE 237
IH +D++SAI TY +S++ FTHA+PTLFNAGTP PQ+SSCFLV MK+DSI+GIY+TLK+
Sbjct: 196 IHGEDLESAINTYKRLSEKLFTHATPTLFNAGTPSPQMSSCFLVQMKEDSIDGIYDTLKQ 255
Query: 238 CAVISKSAGGIGVSVHNIRATGSYIRGTNGTSNGIVPMLRVFNDTARYVDQGGGKRKGAF 297
CA+ISKSAGGIG++VH IRA SYIRGTNGTSNG+VPMLRVFNDTARYVDQGGGKRKGAF
Sbjct: 256 CALISKSAGGIGIAVHKIRAAQSYIRGTNGTSNGLVPMLRVFNDTARYVDQGGGKRKGAF 315
Query: 298 AVYLEPWHADIFEFLNLKKNHGKEEHRARDLFYALWVPDLFMERVQTNGQWSLFCPNEAS 357
AVYLEPWHAD+FEF++LKKN GKEE RARDLFYALWV D+FMERV+ NG W+LFCPNEA
Sbjct: 316 AVYLEPWHADVFEFIDLKKNTGKEEMRARDLFYALWVSDIFMERVEQNGDWALFCPNEAP 375
Query: 358 GLADCWGAEFEKLYTHYEREGKA-KKVVQAQNLWFEILTSQIETGTPYMLFKDTCNRKSN 416
GLA+ E LY YE ++V++AQ LWF I+ SQ+ETGTP++L+KD CN KSN
Sbjct: 376 GLAETHSEEHRALYLKYEATPDLPRRVIKAQELWFAIMESQVETGTPFILYKDACNAKSN 435
Query: 417 QQNLGTIKSSNLCTEIIEYTSPTETAVCNLASIALPRFVREKDVPVESHPSRIVGSRGSK 476
Q+NLGTI SSNLCTEII+YTSP E AVCNLASIALP+FVR+K VGS K
Sbjct: 436 QKNLGTISSSNLCTEIIQYTSPDEIAVCNLASIALPKFVRQK-----------VGSTDPK 484
Query: 477 NRFFDFEKLAEVTAIVTENLNKIIDVNYYPVETARRSNLRHRPIGIGVQGLADTFILLGM 536
+ FD + L E+T ++T NLN IID NYYPV A+ SNLRHRPIGIG+QGLAD FI + M
Sbjct: 485 EKEFDHQFLFEITKLITVNLNVIIDRNYYPVAEAKTSNLRHRPIGIGIQGLADVFIKMRM 544
Query: 537 AFESPEAQQLNKDIFETIYYHALKTSSEIAAKEGPYETYHNSPVSKGILQPDMWNVIPSD 596
F+S A +LN +I ETIY+ AL S E+A ++G YE++ SP SKGILQ DMWNV PS
Sbjct: 545 PFDSVAAAKLNVEIAETIYFAALTASHELAIRDGTYESFKGSPASKGILQFDMWNVTPSS 604
Query: 597 RWDWGVLRD-MISKNGVRNSLLVAPMPTASTSQILGNNECFEPYTSNIYSRRVLSGEFVV 655
RW+W L+D +++K G+RNSLL+APMPTASTSQILGNNECFEPYTSNIYSRRVL+GEF +
Sbjct: 605 RWNWAELKDNIVNKGGLRNSLLIAPMPTASTSQILGNNECFEPYTSNIYSRRVLAGEFTI 664
Query: 656 VNKHLLHDLTEMGIWSPTIKNKIIYDDGSVQKIPEIPEELKMIYKTVWEIKQMTLVDMAV 715
VNK LL DL E+GIWSP +KN+I+ GS+Q I IP++LK +YKTVWEI+Q TL+DMA
Sbjct: 665 VNKQLLEDLMELGIWSPEMKNQIVAARGSIQSIGGIPDDLKELYKTVWEIRQRTLIDMAA 724
Query: 716 DRGCYIDQSQSLNIHMDQPNFKKVTSLHFRTWSRGLKTGMYYLRSRAAADAIKFTVDTSV 775
DRG +IDQSQS N+ + +P F K+TS+HF +W +GLKTGMYYLR+R AADAI+FTVD V
Sbjct: 725 DRGAFIDQSQSFNVFIAEPTFAKLTSMHFYSWKKGLKTGMYYLRTRPAADAIQFTVDPIV 784
Query: 776 FKEKPEKPELVVDDETKM 793
+ P+ E ++ T +
Sbjct: 785 -SQTPKPVENNINSTTPL 801
>WB|WBGene00004391 [details] [associations]
symbol:rnr-1 species:6239 "Caenorhabditis elegans"
[GO:0004748 "ribonucleoside-diphosphate reductase activity,
thioredoxin disulfide as acceptor" evidence=IEA] [GO:0005971
"ribonucleoside-diphosphate reductase complex" evidence=IEA]
[GO:0006260 "DNA replication" evidence=IEA] [GO:0055114
"oxidation-reduction process" evidence=IEA] [GO:0005524 "ATP
binding" evidence=IEA] [GO:0009792 "embryo development ending in
birth or egg hatching" evidence=IMP] [GO:0000003 "reproduction"
evidence=IMP] [GO:0040035 "hermaphrodite genitalia development"
evidence=IMP] [GO:0040007 "growth" evidence=IMP] [GO:0002119
"nematode larval development" evidence=IMP] [GO:0040011
"locomotion" evidence=IMP] [GO:0040017 "positive regulation of
locomotion" evidence=IMP] [GO:0006915 "apoptotic process"
evidence=IMP] InterPro:IPR000788 InterPro:IPR008926
InterPro:IPR013346 InterPro:IPR013509 Pfam:PF00317 Pfam:PF02867
PRINTS:PR01183 PROSITE:PS00089 UniPathway:UPA00326 Pfam:PF03477
GO:GO:0005524 GO:GO:0009792 GO:GO:0040007 GO:GO:0006915
GO:GO:0002119 GO:GO:0006260 GO:GO:0040011 GO:GO:0040017
GO:GO:0040035 GO:GO:0009263 KO:K10807 InterPro:IPR005144
PROSITE:PS51161 eggNOG:COG0209 GO:GO:0005971 GO:GO:0004748
SUPFAM:SSF48168 EMBL:Z19158 HOGENOM:HOG000057035 TIGRFAMs:TIGR02506
PIR:S28302 RefSeq:NP_499039.1 ProteinModelPortal:Q03604 SMR:Q03604
DIP:DIP-26889N IntAct:Q03604 MINT:MINT-1080458 STRING:Q03604
PaxDb:Q03604 PRIDE:Q03604 EnsemblMetazoa:T23G5.1.1
EnsemblMetazoa:T23G5.1.2 EnsemblMetazoa:T23G5.1.3 GeneID:176301
KEGG:cel:CELE_T23G5.1 UCSC:T23G5.1.2 CTD:176301 WormBase:T23G5.1
GeneTree:ENSGT00390000001372 InParanoid:Q03604 OMA:YKYGVKT
NextBio:891992 Uniprot:Q03604
Length = 788
Score = 1571 (558.1 bits), Expect = 8.9e-270, Sum P(2) = 8.9e-270
Identities = 295/454 (64%), Positives = 360/454 (79%)
Query: 2 YVVKRDGRQEAVHFDKITARLKKLSYGLSTEHCDPVLVSQKVCAGVYKGVTTSQLDELXX 61
YVVKRDGR+E VHFDKIT+R++KLSYGL+ + DPV V+ KV +G+YKGVTT +LD L
Sbjct: 8 YVVKRDGRKEDVHFDKITSRIQKLSYGLNMDFVDPVAVAIKVISGLYKGVTTVELDNLAA 67
Query: 62 XXXXXXXXNHPDYASLAARIAVSNLHKNTKKSFSETIKDMYNHYNERSGLKAPLIADDIY 121
HP+YA LAARIAVSNLHK T K FSE +K ++ ++ +G AP+I+D+ +
Sbjct: 68 ETAASMTTQHPEYALLAARIAVSNLHKKTNKVFSEVMKTLHEFHHPHTGKHAPMISDETW 127
Query: 122 EIIMKNAACLDSEIIXXXXXXXXXXXXKTLERSYLLKVQGKVVERPQHMLMRVSIGIHKD 181
II KNA L+S I+ KTLERSYLLK+ ++VERPQ MLMRVSIGIH D
Sbjct: 128 AIIEKNADKLNSAIVYDRDYSYTYFGFKTLERSYLLKINKEIVERPQQMLMRVSIGIHGD 187
Query: 182 DIDSAIKTYHMMSQRWFTHASPTLFNAGTPRPQLSSCFLVCMKDDSIEGIYETLKECAVI 241
DI SAI+TY++MS+R+ THASPTLFN+GT RPQ+SSCFL+ M +DSI GIY+TLK+CA+I
Sbjct: 188 DITSAIETYNLMSERYMTHASPTLFNSGTCRPQMSSCFLLTMSEDSILGIYDTLKQCALI 247
Query: 242 SKSAGGIGVSVHNIRATGSYIRGTNGTSNGIVPMLRVFNDTARYVDQGGGKRKGAFAVYL 301
SKSAGGIG++VH IRATGS I GTNGTSNG++PMLRV+N+TARYVDQGG KR GAFA+YL
Sbjct: 248 SKSAGGIGLNVHKIRATGSVIAGTNGTSNGLIPMLRVYNNTARYVDQGGNKRPGAFAIYL 307
Query: 302 EPWHADIFEFLNLKKNHGKEEHRARDLFYALWVPDLFMERVQTNGQWSLFCPNEASGLAD 361
EPWHADIFEF++L+KN G EE RARDLF ALW+PDLFM+RV+ + +WSL CP E GL D
Sbjct: 308 EPWHADIFEFVSLRKNTGPEEERARDLFLALWIPDLFMKRVEKDQEWSLMCPCECPGLDD 367
Query: 362 CWGAEFEKLYTHYEREGKAKKVVQAQNLWFEILTSQIETGTPYMLFKDTCNRKSNQQNLG 421
CWG EFE LY YE EG+ +K V+A+ LW I+++QIETG PY+ +KD NRKSNQQNLG
Sbjct: 368 CWGEEFEALYAKYEAEGRVRKTVKARKLWEHIVSNQIETGLPYITYKDAANRKSNQQNLG 427
Query: 422 TIKSSNLCTEIIEYTSPTETAVCNLASIALPRFV 455
TIK SNLCTEIIEY++P E AVCNLASIAL R+V
Sbjct: 428 TIKCSNLCTEIIEYSAPDEIAVCNLASIALNRYV 461
Score = 1047 (373.6 bits), Expect = 8.9e-270, Sum P(2) = 8.9e-270
Identities = 195/322 (60%), Positives = 248/322 (77%)
Query: 480 FDFEKLAEVTAIVTENLNKIIDVNYYPVETARRSNLRHRPIGIGVQGLADTFILLGMAFE 539
FDF KLAEVT ++T NLNKIIDVNYYPVE AR SN+RHRPIG+GVQGLAD F+L+ F
Sbjct: 467 FDFVKLAEVTKVITRNLNKIIDVNYYPVEEARNSNMRHRPIGLGVQGLADCFMLMRYPFT 526
Query: 540 SPEAQQLNKDIFETIYYHALKTSSEIAAKEGPYETYHNSPVSKGILQPDMWNVIPSDRWD 599
S EA+ LNK IFETIYY AL+ S E+A GPY TY SPVSKG LQ DMW V P+D+ D
Sbjct: 527 SAEARDLNKRIFETIYYAALEASCELAELNGPYSTYEGSPVSKGQLQFDMWGVTPTDQCD 586
Query: 600 WGVLRDMISKNGVRNSLLVAPMPTASTSQILGNNECFEPYTSNIYSRRVLSGEFVVVNKH 659
W LR I+K+G+RNSLL+APMPTAST+QILGNNE EPYTSNIYSRRVLSG+F +VN H
Sbjct: 587 WATLRKKIAKHGIRNSLLMAPMPTASTAQILGNNESIEPYTSNIYSRRVLSGDFQIVNPH 646
Query: 660 LLHDLTEMGIWSPTIKNKIIYDDGSVQKIPEIPEELKMIYKTVWEIKQMTLVDMAVDRGC 719
+L DL E G+W+ +KN++I ++GS+Q I IP ++K +Y+TVWEI Q +++MA DRG
Sbjct: 647 MLKDLVERGLWTDEMKNRLIANNGSIQNIDGIPSDIKELYRTVWEISQKDIIEMAADRGA 706
Query: 720 YIDQSQSLNIHMDQPNFKKVTSLHFRTWSRGLKTGMYYLRSRAAADAIKFTVDTSVFK-- 777
YIDQSQSLNIHM +P++ +TS+HF W +GLKTGMYYLR++ A +A++FTVD + K
Sbjct: 707 YIDQSQSLNIHMAKPSYAGITSMHFYGWKKGLKTGMYYLRTKPAVNAVQFTVDKNALKTN 766
Query: 778 EKPEKPELVVDDETKMAQVVCS 799
++ E P V + + + ++CS
Sbjct: 767 QQAETPATVAESQDEGC-LMCS 787
>UNIPROTKB|Q03604 [details] [associations]
symbol:rnr-1 "Ribonucleoside-diphosphate reductase large
subunit" species:6239 "Caenorhabditis elegans" [GO:0009263
"deoxyribonucleotide biosynthetic process" evidence=ISS]
[GO:0004748 "ribonucleoside-diphosphate reductase activity,
thioredoxin disulfide as acceptor" evidence=ISS] InterPro:IPR000788
InterPro:IPR008926 InterPro:IPR013346 InterPro:IPR013509
Pfam:PF00317 Pfam:PF02867 PRINTS:PR01183 PROSITE:PS00089
UniPathway:UPA00326 Pfam:PF03477 GO:GO:0005524 GO:GO:0009792
GO:GO:0040007 GO:GO:0006915 GO:GO:0002119 GO:GO:0006260
GO:GO:0040011 GO:GO:0040017 GO:GO:0040035 GO:GO:0009263 KO:K10807
InterPro:IPR005144 PROSITE:PS51161 eggNOG:COG0209 GO:GO:0005971
GO:GO:0004748 SUPFAM:SSF48168 EMBL:Z19158 HOGENOM:HOG000057035
TIGRFAMs:TIGR02506 PIR:S28302 RefSeq:NP_499039.1
ProteinModelPortal:Q03604 SMR:Q03604 DIP:DIP-26889N IntAct:Q03604
MINT:MINT-1080458 STRING:Q03604 PaxDb:Q03604 PRIDE:Q03604
EnsemblMetazoa:T23G5.1.1 EnsemblMetazoa:T23G5.1.2
EnsemblMetazoa:T23G5.1.3 GeneID:176301 KEGG:cel:CELE_T23G5.1
UCSC:T23G5.1.2 CTD:176301 WormBase:T23G5.1
GeneTree:ENSGT00390000001372 InParanoid:Q03604 OMA:YKYGVKT
NextBio:891992 Uniprot:Q03604
Length = 788
Score = 1571 (558.1 bits), Expect = 8.9e-270, Sum P(2) = 8.9e-270
Identities = 295/454 (64%), Positives = 360/454 (79%)
Query: 2 YVVKRDGRQEAVHFDKITARLKKLSYGLSTEHCDPVLVSQKVCAGVYKGVTTSQLDELXX 61
YVVKRDGR+E VHFDKIT+R++KLSYGL+ + DPV V+ KV +G+YKGVTT +LD L
Sbjct: 8 YVVKRDGRKEDVHFDKITSRIQKLSYGLNMDFVDPVAVAIKVISGLYKGVTTVELDNLAA 67
Query: 62 XXXXXXXXNHPDYASLAARIAVSNLHKNTKKSFSETIKDMYNHYNERSGLKAPLIADDIY 121
HP+YA LAARIAVSNLHK T K FSE +K ++ ++ +G AP+I+D+ +
Sbjct: 68 ETAASMTTQHPEYALLAARIAVSNLHKKTNKVFSEVMKTLHEFHHPHTGKHAPMISDETW 127
Query: 122 EIIMKNAACLDSEIIXXXXXXXXXXXXKTLERSYLLKVQGKVVERPQHMLMRVSIGIHKD 181
II KNA L+S I+ KTLERSYLLK+ ++VERPQ MLMRVSIGIH D
Sbjct: 128 AIIEKNADKLNSAIVYDRDYSYTYFGFKTLERSYLLKINKEIVERPQQMLMRVSIGIHGD 187
Query: 182 DIDSAIKTYHMMSQRWFTHASPTLFNAGTPRPQLSSCFLVCMKDDSIEGIYETLKECAVI 241
DI SAI+TY++MS+R+ THASPTLFN+GT RPQ+SSCFL+ M +DSI GIY+TLK+CA+I
Sbjct: 188 DITSAIETYNLMSERYMTHASPTLFNSGTCRPQMSSCFLLTMSEDSILGIYDTLKQCALI 247
Query: 242 SKSAGGIGVSVHNIRATGSYIRGTNGTSNGIVPMLRVFNDTARYVDQGGGKRKGAFAVYL 301
SKSAGGIG++VH IRATGS I GTNGTSNG++PMLRV+N+TARYVDQGG KR GAFA+YL
Sbjct: 248 SKSAGGIGLNVHKIRATGSVIAGTNGTSNGLIPMLRVYNNTARYVDQGGNKRPGAFAIYL 307
Query: 302 EPWHADIFEFLNLKKNHGKEEHRARDLFYALWVPDLFMERVQTNGQWSLFCPNEASGLAD 361
EPWHADIFEF++L+KN G EE RARDLF ALW+PDLFM+RV+ + +WSL CP E GL D
Sbjct: 308 EPWHADIFEFVSLRKNTGPEEERARDLFLALWIPDLFMKRVEKDQEWSLMCPCECPGLDD 367
Query: 362 CWGAEFEKLYTHYEREGKAKKVVQAQNLWFEILTSQIETGTPYMLFKDTCNRKSNQQNLG 421
CWG EFE LY YE EG+ +K V+A+ LW I+++QIETG PY+ +KD NRKSNQQNLG
Sbjct: 368 CWGEEFEALYAKYEAEGRVRKTVKARKLWEHIVSNQIETGLPYITYKDAANRKSNQQNLG 427
Query: 422 TIKSSNLCTEIIEYTSPTETAVCNLASIALPRFV 455
TIK SNLCTEIIEY++P E AVCNLASIAL R+V
Sbjct: 428 TIKCSNLCTEIIEYSAPDEIAVCNLASIALNRYV 461
Score = 1047 (373.6 bits), Expect = 8.9e-270, Sum P(2) = 8.9e-270
Identities = 195/322 (60%), Positives = 248/322 (77%)
Query: 480 FDFEKLAEVTAIVTENLNKIIDVNYYPVETARRSNLRHRPIGIGVQGLADTFILLGMAFE 539
FDF KLAEVT ++T NLNKIIDVNYYPVE AR SN+RHRPIG+GVQGLAD F+L+ F
Sbjct: 467 FDFVKLAEVTKVITRNLNKIIDVNYYPVEEARNSNMRHRPIGLGVQGLADCFMLMRYPFT 526
Query: 540 SPEAQQLNKDIFETIYYHALKTSSEIAAKEGPYETYHNSPVSKGILQPDMWNVIPSDRWD 599
S EA+ LNK IFETIYY AL+ S E+A GPY TY SPVSKG LQ DMW V P+D+ D
Sbjct: 527 SAEARDLNKRIFETIYYAALEASCELAELNGPYSTYEGSPVSKGQLQFDMWGVTPTDQCD 586
Query: 600 WGVLRDMISKNGVRNSLLVAPMPTASTSQILGNNECFEPYTSNIYSRRVLSGEFVVVNKH 659
W LR I+K+G+RNSLL+APMPTAST+QILGNNE EPYTSNIYSRRVLSG+F +VN H
Sbjct: 587 WATLRKKIAKHGIRNSLLMAPMPTASTAQILGNNESIEPYTSNIYSRRVLSGDFQIVNPH 646
Query: 660 LLHDLTEMGIWSPTIKNKIIYDDGSVQKIPEIPEELKMIYKTVWEIKQMTLVDMAVDRGC 719
+L DL E G+W+ +KN++I ++GS+Q I IP ++K +Y+TVWEI Q +++MA DRG
Sbjct: 647 MLKDLVERGLWTDEMKNRLIANNGSIQNIDGIPSDIKELYRTVWEISQKDIIEMAADRGA 706
Query: 720 YIDQSQSLNIHMDQPNFKKVTSLHFRTWSRGLKTGMYYLRSRAAADAIKFTVDTSVFK-- 777
YIDQSQSLNIHM +P++ +TS+HF W +GLKTGMYYLR++ A +A++FTVD + K
Sbjct: 707 YIDQSQSLNIHMAKPSYAGITSMHFYGWKKGLKTGMYYLRTKPAVNAVQFTVDKNALKTN 766
Query: 778 EKPEKPELVVDDETKMAQVVCS 799
++ E P V + + + ++CS
Sbjct: 767 QQAETPATVAESQDEGC-LMCS 787
>SGD|S000000872 [details] [associations]
symbol:RNR1 "Major isoform of large subunit of
ribonucleotide-diphosphate reductase" species:4932 "Saccharomyces
cerevisiae" [GO:0000166 "nucleotide binding" evidence=IEA;IDA]
[GO:0009263 "deoxyribonucleotide biosynthetic process"
evidence=IDA] [GO:0005524 "ATP binding" evidence=IEA] [GO:0005737
"cytoplasm" evidence=IEA;IDA] [GO:0006260 "DNA replication"
evidence=IEA] [GO:0008152 "metabolic process" evidence=IEA]
[GO:0016491 "oxidoreductase activity" evidence=IEA] [GO:0055114
"oxidation-reduction process" evidence=IEA] [GO:0004748
"ribonucleoside-diphosphate reductase activity, thioredoxin
disulfide as acceptor" evidence=IEA;IMP;IDA] [GO:0005971
"ribonucleoside-diphosphate reductase complex" evidence=IEA;IDA]
[GO:0005634 "nucleus" evidence=IDA] [GO:0003824 "catalytic
activity" evidence=IEA] InterPro:IPR000788 InterPro:IPR008926
InterPro:IPR013346 InterPro:IPR013509 Pfam:PF00317 Pfam:PF02867
PRINTS:PR01183 PROSITE:PS00089 UniPathway:UPA00326 SGD:S000000872
Pfam:PF03477 GO:GO:0005524 GO:GO:0000166 GO:GO:0006260
EMBL:BK006939 EMBL:U18813 GO:GO:0009263 KO:K10807
InterPro:IPR005144 PROSITE:PS51161 eggNOG:COG0209 GO:GO:0005971
GO:GO:0004748 SUPFAM:SSF48168 HOGENOM:HOG000057035
TIGRFAMs:TIGR02506 GeneTree:ENSGT00390000001372 OMA:ETIYHAS
OrthoDB:EOG480N4T EMBL:X69216 EMBL:X69217 PIR:S50573
RefSeq:NP_010993.1 PDB:1ZYZ PDB:1ZZD PDB:2CVS PDB:2CVT PDB:2CVU
PDB:2CVV PDB:2CVW PDB:2CVX PDB:2CVY PDB:2EUD PDB:2ZLF PDB:2ZLG
PDB:3K8T PDB:3PAW PDB:3RSR PDB:3S87 PDB:3S8A PDB:3S8B PDB:3S8C
PDB:3TB9 PDB:3TBA PDBsum:1ZYZ PDBsum:1ZZD PDBsum:2CVS PDBsum:2CVT
PDBsum:2CVU PDBsum:2CVV PDBsum:2CVW PDBsum:2CVX PDBsum:2CVY
PDBsum:2EUD PDBsum:2ZLF PDBsum:2ZLG PDBsum:3K8T PDBsum:3PAW
PDBsum:3RSR PDBsum:3S87 PDBsum:3S8A PDBsum:3S8B PDBsum:3S8C
PDBsum:3TB9 PDBsum:3TBA ProteinModelPortal:P21524 SMR:P21524
DIP:DIP-6299N IntAct:P21524 MINT:MINT-680321 STRING:P21524
PaxDb:P21524 PeptideAtlas:P21524 PRIDE:P21524 EnsemblFungi:YER070W
GeneID:856801 KEGG:sce:YER070W CYGD:YER070w
EvolutionaryTrace:P21524 NextBio:983047 Genevestigator:P21524
GermOnline:YER070W Uniprot:P21524
Length = 888
Score = 2569 (909.4 bits), Expect = 1.4e-269, Sum P(2) = 1.4e-269
Identities = 472/781 (60%), Positives = 605/781 (77%)
Query: 1 MYVVKRDGRQEAVHFDKITARLKKLSYGLSTEHCDPVLVSQKVCAGVYKGVTTSQLDELX 60
MYV KRDGR+E V FDKITAR+ +L YGL +H D V V+Q++ +GVY+GVTT +LD L
Sbjct: 1 MYVYKRDGRKEPVQFDKITARISRLCYGLDPKHIDAVKVTQRIISGVYEGVTTIELDNLA 60
Query: 61 XXXXXXXXXNHPDYASLAARIAVSNLHKNTKKSFSETIKDMYNHYNERSGLKAPLIADDI 120
HPDYA+LAARIA+SNLHK T K FS+ ++D+Y + N +G AP+I+DD+
Sbjct: 61 AETCAYMTTVHPDYATLAARIAISNLHKQTTKQFSKVVEDLYRYVNAATGKPAPMISDDV 120
Query: 121 YEIIMKNAACLDSEIIXXXXXXXXXXXXKTLERSYLLKVQGKVVERPQHMLMRVSIGIHK 180
Y I+M+N L+S I+ KTLERSYLL++ G+V ERPQH++MRV++GIH
Sbjct: 121 YNIVMENKDKLNSAIVYDRDFQYSYFGFKTLERSYLLRINGQVAERPQHLIMRVALGIHG 180
Query: 181 DDIDSAIKTYHMMSQRWFTHASPTLFNAGTPRPQLSSCFLVCMKDDSIEGIYETLKECAV 240
DI++A++TY++MS ++FTHASPTLFNAGTP+PQ+SSCFLV MK+DSIEGIY+TLKECA+
Sbjct: 181 RDIEAALETYNLMSLKYFTHASPTLFNAGTPKPQMSSCFLVAMKEDSIEGIYDTLKECAL 240
Query: 241 ISKSAGGIGVSVHNIRATGSYIRGTNGTSNGIVPMLRVFNDTARYVDQGGGKRKGAFAVY 300
ISK+AGGIG+ +HNIR+TGSYI GTNGTSNG++PM+RVFN+TARYVDQGG KR GAFA+Y
Sbjct: 241 ISKTAGGIGLHIHNIRSTGSYIAGTNGTSNGLIPMIRVFNNTARYVDQGGNKRPGAFALY 300
Query: 301 LEPWHADIFEFLNLKKNHGKEEHRARDLFYALWVPDLFMERVQTNGQWSLFCPNEASGLA 360
LEPWHADIF+F++++KNHGKEE RARDLF ALW+PDLFM+RV+ NG W+LF P A GL+
Sbjct: 301 LEPWHADIFDFIDIRKNHGKEEIRARDLFPALWIPDLFMKRVEENGTWTLFSPTSAPGLS 360
Query: 361 DCWGAEFEKLYTHYEREGKAKKVVQAQNLWFEILTSQIETGTPYMLFKDTCNRKSNQQNL 420
DC+G EFE LYT YE+EG+ K ++AQ LW+ IL +Q ETGTP++++KD CNRKSNQ+NL
Sbjct: 361 DCYGDEFEALYTRYEKEGRGK-TIKAQKLWYSILEAQTETGTPFVVYKDACNRKSNQKNL 419
Query: 421 GTIKSSNLCTEIIEYTSPTETAVCNLASIALPRFVREKDVPVESHPSRIVGSRGSKNRFF 480
G IKSSNLC EI+EY++P ETAVCNLAS+ALP F+ S K +
Sbjct: 420 GVIKSSNLCCEIVEYSAPDETAVCNLASVALPAFIET--------------SEDGKTSTY 465
Query: 481 DFEKLAEVTAIVTENLNKIIDVNYYPVETARRSNLRHRPIGIGVQGLADTFILLGMAFES 540
+F+KL E+ +VT NLN++ID NYYPVE AR+SN+RHRPI +GVQGLADTF+LL + F+S
Sbjct: 466 NFKKLHEIAKVVTRNLNRVIDRNYYPVEEARKSNMRHRPIALGVQGLADTFMLLRLPFDS 525
Query: 541 PEAQQLNKDIFETIYYHALKTSSEIAAKEGPYETYHNSPVSKGILQPDMWNVIPSDRWDW 600
EA+ LN IFETIY+ +++ S E+A K+GPYET+ SP S+GILQ DMW+ P WDW
Sbjct: 526 EEARLLNIQIFETIYHASMEASCELAQKDGPYETFQGSPASQGILQFDMWDQKPYGMWDW 585
Query: 601 GVLRDMISKNGVRNSLLVAPMPTASTSQILGNNECFEPYTSNIYSRRVLSGEFVVVNKHL 660
LR I K+GVRNSL +APMPTASTSQILG NECFEP TSN+YSRRVLSGEF VVN +L
Sbjct: 586 DTLRKDIMKHGVRNSLTMAPMPTASTSQILGYNECFEPVTSNMYSRRVLSGEFQVVNPYL 645
Query: 661 LHDLTEMGIWSPTIKNKIIYDDGSVQKIPEIPEELKMIYKTVWEIKQMTLVDMAVDRGCY 720
L DL ++GIW +K +I +GS+Q +P +P+ELK +YKTVWEI Q T+++MA DR Y
Sbjct: 646 LRDLVDLGIWDEGMKQYLITQNGSIQGLPNVPQELKDLYKTVWEISQKTIINMAADRSVY 705
Query: 721 IDQSQSLNIHMDQPNFKKVTSLHFRTWSRGLKTGMYYLRSRAAADAIKFTVDTSVFKEKP 780
IDQS SLN+ + P K+TS+HF W +GLKTGMYYLR++AA+ AI+FT+D + +
Sbjct: 706 IDQSHSLNLFLRAPTMGKLTSMHFYGWKKGLKTGMYYLRTQAASAAIQFTIDQKIADQAT 765
Query: 781 E 781
E
Sbjct: 766 E 766
Score = 47 (21.6 bits), Expect = 1.4e-269, Sum P(2) = 1.4e-269
Identities = 19/69 (27%), Positives = 31/69 (44%)
Query: 746 TWSRGLKTGMYYLRSRAAADAIKFTVDTSVFKEKPEKPELVVDDETKM----AQVV-CSL 800
T S L GM L + + + V E+ P +V D+ET+ ++V+ C++
Sbjct: 820 TGSHSLTKGMAELNVQESKVEVP-EVPAPTKNEEKAAP-IVDDEETEFDIYNSKVIACAI 877
Query: 801 TNREECMAC 809
N E C C
Sbjct: 878 DNPEACEMC 886
>UNIPROTKB|E1C4Q0 [details] [associations]
symbol:E1C4Q0 "Ribonucleoside-diphosphate reductase"
species:9031 "Gallus gallus" [GO:0005524 "ATP binding"
evidence=IEA] [GO:0005971 "ribonucleoside-diphosphate reductase
complex" evidence=IEA] [GO:0004748 "ribonucleoside-diphosphate
reductase activity, thioredoxin disulfide as acceptor"
evidence=IEA] [GO:0006260 "DNA replication" evidence=IEA]
[GO:0009263 "deoxyribonucleotide biosynthetic process"
evidence=IEA] [GO:0051290 "protein heterotetramerization"
evidence=IEA] InterPro:IPR000788 InterPro:IPR008926
InterPro:IPR013346 InterPro:IPR013509 Pfam:PF00317 Pfam:PF02867
PRINTS:PR01183 UniPathway:UPA00326 Pfam:PF03477 GO:GO:0005524
GO:GO:0006260 GO:GO:0051290 GO:GO:0009263 InterPro:IPR005144
PROSITE:PS51161 GO:GO:0005971 GO:GO:0004748 SUPFAM:SSF48168
OMA:PQARNSN TIGRFAMs:TIGR02506 GeneTree:ENSGT00390000001372
EMBL:AADN02055234 EMBL:AADN02055235 EMBL:AADN02055236
IPI:IPI00580561 Ensembl:ENSGALT00000028034 Uniprot:E1C4Q0
Length = 784
Score = 1651 (586.2 bits), Expect = 3.9e-267, Sum P(2) = 3.9e-267
Identities = 305/455 (67%), Positives = 366/455 (80%)
Query: 1 MYVVKRDGRQEAVHFDKITARLKKLSYGLSTEHCDPVLVSQKVCAGVYKGVTTSQLDELX 60
M+VVKRDGRQE V FDKIT+R++KL YGL+ + DP ++ KV G+Y GVTT +LD L
Sbjct: 1 MHVVKRDGRQERVMFDKITSRIQKLCYGLNADFVDPAQITMKVIQGLYSGVTTVELDTLA 60
Query: 61 XXXXXXXXXNHPDYASLAARIAVSNLHKNTKKSFSETIKDMYNHYNERSGLKAPLIADDI 120
HPDYA LAARIAVSNLHK TKK FS+ + D+YN+ N +G +P+I+ +
Sbjct: 61 AETAATLTTKHPDYAILAARIAVSNLHKETKKVFSDVMDDLYNYINPHNGKHSPMISKET 120
Query: 121 YEIIMKNAACLDSEIIXXXXXXXXXXXXKTLERSYLLKVQGKVVERPQHMLMRVSIGIHK 180
+I++ N L+S II KTLERSYLLK+ KV ERPQHMLMRV++GIHK
Sbjct: 121 LDIVLANKDRLNSAIIYDRDFSYNYFGFKTLERSYLLKINSKVAERPQHMLMRVAVGIHK 180
Query: 181 DDIDSAIKTYHMMSQRWFTHASPTLFNAGTPRPQLSSCFLVCMKDDSIEGIYETLKECAV 240
+DID+AI+TY+++S+RWFTHASPTLFNAGT RPQLSSCFL+CMKDDSIEGIY+TLK+CA+
Sbjct: 181 NDIDAAIETYNLLSERWFTHASPTLFNAGTNRPQLSSCFLLCMKDDSIEGIYDTLKQCAL 240
Query: 241 ISKSAGGIGVSVHNIRATGSYIRGTNGTSNGIVPMLRVFNDTARYVDQGGGKRKGAFAVY 300
ISKSAGGIG++V IRATGSYI GTNG SNG+VPMLRV+N+TARYVDQGG KR GAFA+Y
Sbjct: 241 ISKSAGGIGLAVSCIRATGSYIAGTNGNSNGLVPMLRVYNNTARYVDQGGNKRPGAFAIY 300
Query: 301 LEPWHADIFEFLNLKKNHGKEEHRARDLFYALWVPDLFMERVQTNGQWSLFCPNEASGLA 360
LEPWH DIFEFL+LKKN GKEE RARDLF+ALW+PDLFM+RV+TN WSL CPNE GL
Sbjct: 301 LEPWHLDIFEFLDLKKNTGKEEQRARDLFFALWIPDLFMKRVETNQDWSLMCPNECPGLD 360
Query: 361 DCWGAEFEKLYTHYEREGKAKKVVQAQNLWFEILTSQIETGTPYMLFKDTCNRKSNQQNL 420
+ WG EFEKLY YE++G+ ++VV+AQ LW+ I+ SQ ETGTPYML+KD+CNRKSNQQNL
Sbjct: 361 EVWGEEFEKLYESYEKQGRVRRVVKAQQLWYAIIESQTETGTPYMLYKDSCNRKSNQQNL 420
Query: 421 GTIKSSNLCTEIIEYTSPTETAVCNLASIALPRFV 455
GTIK SNLCTEI+EYTS E AVCNLASIAL +V
Sbjct: 421 GTIKCSNLCTEIVEYTSKDEVAVCNLASIALNMYV 455
Score = 942 (336.7 bits), Expect = 3.9e-267, Sum P(2) = 3.9e-267
Identities = 192/372 (51%), Positives = 250/372 (67%)
Query: 441 TAVCNLASIALPRFVREKDVPVESHPSRIVGSRGSKNRFFDFEKLAEVTAIVTENLNKII 500
T C+ + + + +V V + S + + +DF+KLAEVT ++ NLNKII
Sbjct: 422 TIKCSNLCTEIVEYTSKDEVAVCNLASIALNMYVTSEHTYDFKKLAEVTKVIVRNLNKII 481
Query: 501 DVNYYPVETARRSNLRHRPIGIGVQGLADTFILLGMAFESPEAQQLNKDIFETIYYHALK 560
D+NYYPV A RSN RHRPIGIGVQGLAD FIL+ FESPEAQ+LN+ IFETIYY AL+
Sbjct: 482 DINYYPVPEAERSNRRHRPIGIGVQGLADAFILMRFPFESPEAQRLNQQIFETIYYGALE 541
Query: 561 TSSEIAAKEGPYETYHNSPVSKGILQPDMWNVIPSDRWDWGVLRDMISKNGVRNSLLVAP 620
S E+A ++GPYETY SPVSKGILQ DMWNV PSD WDW L++ I+ NG + L
Sbjct: 542 ASCELAEQQGPYETYEGSPVSKGILQYDMWNVTPSDLWDWKALKEKIA-NGWLSLFLWLH 600
Query: 621 MPTASTSQILGNNECF-EPYTSNIYSRRVLSGEFVVVNKHLLHDLTEMGIWSPTIKNKII 679
A + + C E S+++ EF VVN HLL DLTE G+W+ +KN+II
Sbjct: 601 TGCAHPLGSVLTDFCVCELRISDLFL------EFHVVNPHLLKDLTERGLWNEEMKNQII 654
Query: 680 YDDGSVQKIPEIPEELKMIYKTVWEIKQMTLVDMAVDRGCYIDQSQSLNIHMDQPNFKKV 739
+GS+Q I EIP +LK +YKTVWEI Q T++ MA DRG +IDQSQSLNIH+ +PN+ K+
Sbjct: 655 AHNGSIQNISEIPADLKQLYKTVWEISQKTVLKMAADRGAFIDQSQSLNIHIAEPNYGKL 714
Query: 740 TSLHFRTWSRGLKTGMYYLRSRAAADAIKFTVDTSVFKEKPEKPELVVDDETKMAQVVCS 799
TS+HF W +GLKTGMYYLR++ AA+ I+FT++ +E+ + E + E A +VCS
Sbjct: 715 TSMHFYGWKQGLKTGMYYLRTKPAANPIQFTLNKEKLREREKASE--EEKERNKAAMVCS 772
Query: 800 LTNREECMACGS 811
L NR+ECM CGS
Sbjct: 773 LENRDECMMCGS 784
>SGD|S000001328 [details] [associations]
symbol:RNR3 "Minor isoform of the large subunit of the RNR
complex" species:4932 "Saccharomyces cerevisiae" [GO:0000166
"nucleotide binding" evidence=IEA] [GO:0009263 "deoxyribonucleotide
biosynthetic process" evidence=IDA] [GO:0005524 "ATP binding"
evidence=IEA] [GO:0005737 "cytoplasm" evidence=IEA;IDA] [GO:0006260
"DNA replication" evidence=IEA] [GO:0008152 "metabolic process"
evidence=IEA] [GO:0016491 "oxidoreductase activity" evidence=IEA]
[GO:0055114 "oxidation-reduction process" evidence=IEA] [GO:0005971
"ribonucleoside-diphosphate reductase complex" evidence=IEA;TAS]
[GO:0005739 "mitochondrion" evidence=IDA] [GO:0004748
"ribonucleoside-diphosphate reductase activity, thioredoxin
disulfide as acceptor" evidence=IEA;IDA] [GO:0003824 "catalytic
activity" evidence=IEA] InterPro:IPR000788 InterPro:IPR008926
InterPro:IPR013346 InterPro:IPR013509 Pfam:PF00317 Pfam:PF02867
PRINTS:PR01183 PROSITE:PS00089 UniPathway:UPA00326 Pfam:PF03477
SGD:S000001328 GO:GO:0005739 GO:GO:0005524 GO:GO:0006260
EMBL:BK006942 EMBL:Z38060 GO:GO:0009263 RefSeq:NP_012198.3
GeneID:854744 KEGG:sce:YIL066C KO:K10807 InterPro:IPR005144
PROSITE:PS51161 eggNOG:COG0209 GO:GO:0005971 GO:GO:0004748
SUPFAM:SSF48168 HOGENOM:HOG000057035 TIGRFAMs:TIGR02506
GeneTree:ENSGT00390000001372 OrthoDB:EOG480N4T EMBL:M58012
PIR:S48413 RefSeq:NP_012204.3 ProteinModelPortal:P21672 SMR:P21672
DIP:DIP-2563N IntAct:P21672 MINT:MINT-425113 STRING:P21672
PaxDb:P21672 PeptideAtlas:P21672 PRIDE:P21672 EnsemblFungi:YIL066C
GeneID:854750 KEGG:sce:YIL060W CYGD:YIL066c OMA:RTPFICQ
NextBio:977464 Genevestigator:P21672 GermOnline:YIL066C
Uniprot:P21672
Length = 869
Score = 2561 (906.6 bits), Expect = 3.0e-266, P = 3.0e-266
Identities = 475/775 (61%), Positives = 600/775 (77%)
Query: 1 MYVVKRDGRQEAVHFDKITARLKKLSYGLSTEHCDPVLVSQKVCAGVYKGVTTSQLDELX 60
MYV+KRDGR+E V FDKIT+R+ +LSYGL D V V+Q++ +GVY GVTT +LD L
Sbjct: 1 MYVIKRDGRKEPVQFDKITSRITRLSYGLDPNRIDAVKVTQRIISGVYSGVTTVELDNLA 60
Query: 61 XXXXXXXXXNHPDYASLAARIAVSNLHKNTKKSFSETIKDMYNHYNERSGLKAPLIADDI 120
HPDYA+LAARIA+SNLHK T K FS+ I+D+++ N +G AP+I+D+I
Sbjct: 61 AETCAYMTTVHPDYATLAARIAISNLHKQTTKQFSKVIEDLHDWINPATGKHAPMISDEI 120
Query: 121 YEIIMKNAACLDSEIIXXXXXXXXXXXXKTLERSYLLKVQGKVVERPQHMLMRVSIGIHK 180
Y I+M+N L+S I+ KTLERSYLL++ G+V ERPQH++MRV++GIH
Sbjct: 121 YNIVMENKDTLNSAIVYDRDFQYTYFGFKTLERSYLLRLNGEVAERPQHLVMRVALGIHG 180
Query: 181 DDIDSAIKTYHMMSQRWFTHASPTLFNAGTPRPQLSSCFLVCMKDDSIEGIYETLKECAV 240
DI+S +KTY++MS R+FTHASPTLFNAGTP PQ+SSCFL+ MKDDSIEGIY+TLKECA+
Sbjct: 181 SDIESVLKTYNLMSLRYFTHASPTLFNAGTPHPQMSSCFLIAMKDDSIEGIYDTLKECAM 240
Query: 241 ISKSAGGIGVSVHNIRATGSYIRGTNGTSNGIVPMLRVFNDTARYVDQGGGKRKGAFAVY 300
ISK+AGG+G+ ++NIR+TGSYI GTNGTSNG++PM+RVFN+TARYVDQGG KR GAFA++
Sbjct: 241 ISKTAGGVGLHINNIRSTGSYIAGTNGTSNGLIPMIRVFNNTARYVDQGGNKRPGAFALF 300
Query: 301 LEPWHADIFEFLNLKKNHGKEEHRARDLFYALWVPDLFMERVQTNGQWSLFCPNEASGLA 360
LEPWHADIF+F++++K HGKEE RARDLF ALW+PDLFM+RVQ +G W+LF P+ A GL
Sbjct: 301 LEPWHADIFDFVDIRKTHGKEEIRARDLFPALWIPDLFMKRVQEDGPWTLFSPSAAPGLD 360
Query: 361 DCWGAEFEKLYTHYEREGKAKKVVQAQNLWFEILTSQIETGTPYMLFKDTCNRKSNQQNL 420
D WG EFE+LYT YEREG+ K ++AQ LW+ IL +Q ETGTP+M++KD CNRK+NQQNL
Sbjct: 361 DVWGDEFEELYTRYEREGRGK-TIKAQKLWYAILQAQTETGTPFMVYKDACNRKTNQQNL 419
Query: 421 GTIKSSNLCTEIIEYTSPTETAVCNLASIALPRFVREKDVPVESHPSRIVGSRGSKNRFF 480
GTIKSSNLC EI+EY+SP ETAVCNLASIALP FV +V S K +
Sbjct: 420 GTIKSSNLCCEIVEYSSPDETAVCNLASIALPAFV---EV-----------SEDGKTASY 465
Query: 481 DFEKLAEVTAIVTENLNKIIDVNYYPVETARRSNLRHRPIGIGVQGLADTFILLGMAFES 540
+FE+L E+ ++T NLN++ID NYYPV AR SN++HRPI +GVQGLADT+++L + FES
Sbjct: 466 NFERLHEIAKVITHNLNRVIDRNYYPVPEARNSNMKHRPIALGVQGLADTYMMLRLPFES 525
Query: 541 PEAQQLNKDIFETIYYHALKTSSEIAAKEGPYETYHNSPVSKGILQPDMWNVIPSDRWDW 600
EAQ LNK IFETIY+ L+ S E+A KEG Y T+ SP SKGILQ DMWN P WDW
Sbjct: 526 EEAQTLNKQIFETIYHATLEASCELAQKEGKYSTFEGSPASKGILQFDMWNAKPFGMWDW 585
Query: 601 GVLRDMISKNGVRNSLLVAPMPTASTSQILGNNECFEPYTSNIYSRRVLSGEFVVVNKHL 660
LR I K+G+RNSL +APMPTASTSQILG NECFEP TSN+YSRRVLSGEF VVN +L
Sbjct: 586 ETLRKDIVKHGLRNSLTMAPMPTASTSQILGYNECFEPVTSNMYSRRVLSGEFQVVNPYL 645
Query: 661 LHDLTEMGIWSPTIKNKIIYDDGSVQKIPEIPEELKMIYKTVWEIKQMTLVDMAVDRGCY 720
L DL ++GIW ++K +I +GS+Q +P +P+ELK +YKTVWEI Q T+++MA DR Y
Sbjct: 646 LRDLVDLGIWDDSMKQYLITQNGSIQGLPNVPQELKELYKTVWEISQKTIINMAADRAIY 705
Query: 721 IDQSQSLNIHMDQPNFKKVTSLHFRTWSRGLKTGMYYLRSRAAADAIKFTVDTSV 775
IDQS SLN+ + P+ K+TS+HF W +GLKTGMYYLR++AA+ AI+FT+D V
Sbjct: 706 IDQSHSLNLFLQAPSMGKITSMHFYGWKKGLKTGMYYLRTQAASAAIQFTIDQEV 760
>UNIPROTKB|P50648 [details] [associations]
symbol:RNR1 "Ribonucleoside-diphosphate reductase large
subunit" species:57267 "Plasmodium falciparum Dd2" [GO:0004748
"ribonucleoside-diphosphate reductase activity, thioredoxin
disulfide as acceptor" evidence=ISS] [GO:0009263
"deoxyribonucleotide biosynthetic process" evidence=ISS]
InterPro:IPR000788 InterPro:IPR008926 InterPro:IPR013346
InterPro:IPR013509 Pfam:PF00317 Pfam:PF02867 PRINTS:PR01183
PROSITE:PS00089 UniPathway:UPA00326 Pfam:PF03477 GO:GO:0005524
GO:GO:0006260 GO:GO:0009263 InterPro:IPR005144 PROSITE:PS51161
eggNOG:COG0209 GO:GO:0005971 GO:GO:0004748 SUPFAM:SSF48168
TIGRFAMs:TIGR02506 EMBL:U01323 ProteinModelPortal:P50648 SMR:P50648
Uniprot:P50648
Length = 806
Score = 1537 (546.1 bits), Expect = 3.2e-263, Sum P(2) = 3.2e-263
Identities = 289/455 (63%), Positives = 350/455 (76%)
Query: 1 MYVVKRDGRQEAVHFDKITARLKKLSYGLSTEHCDPVLVSQKVCAGVYKGVTTSQLDELX 60
MYV+ R G +E + FD+I R+++LSYGL E DP V+Q V G+Y G+ T +LDEL
Sbjct: 1 MYVLNRKGEEEDISFDQILKRIQRLSYGLH-ELVDPARVTQGVINGMYSGIKTCELDELA 59
Query: 61 XXXXXXXXXNHPDYASLAARIAVSNLHKNTKKSFSETIKDMYNHYNERSGLKAPLIADDI 120
HPD++ LAARI NLHKNT +E + +Y Y + G A LI+ ++
Sbjct: 60 AQTCAYMATTHPDFSILAARITTDNLHKNTSDDVAEVAEALYT-YKDVRGRPASLISKEV 118
Query: 121 YEIIMKNAACLDSEIIXXXXXXXXXXXXKTLERSYLLKVQGKVVERPQHMLMRVSIGIHK 180
Y+ I+ + L+ EI KTLERSYLL++ K++ERPQH+LMRVSIGIH
Sbjct: 119 YDFILLHKDRLNKEIDYTRDFNYDYFGFKTLERSYLLRINNKIIERPQHLLMRVSIGIHI 178
Query: 181 DDIDSAIKTYHMMSQRWFTHASPTLFNAGTPRPQLSSCFLVCMKDDSIEGIYETLKECAV 240
DDID A++TYH+MSQ++FTHA+PTLFN+GTPRPQ+SSCFL+ MK DSIEGI+ETLK+CA+
Sbjct: 179 DDIDKALETYHLMSQKYFTHATPTLFNSGTPRPQMSSCFLLSMKADSIEGIFETLKQCAL 238
Query: 241 ISKSAGGIGVSVHNIRATGSYIRGTNGTSNGIVPMLRVFNDTARYVDQGGGKRKGAFAVY 300
ISK+AGGIGV+V +IR SYIRGTNG SNG+VPMLRVFNDTARYVDQGGGKRKG+FAVY
Sbjct: 239 ISKTAGGIGVAVQDIRGQNSYIRGTNGISNGLVPMLRVFNDTARYVDQGGGKRKGSFAVY 298
Query: 301 LEPWHADIFEFLNLKKNHGKEEHRARDLFYALWVPDLFMERVQTNGQWSLFCPNEASGLA 360
+EPWH+DIFEFL+L+KNHGKEE RARDLFYA+WVPDLFM+RV+ N W+L CPNE GL+
Sbjct: 299 IEPWHSDIFEFLDLRKNHGKEELRARDLFYAVWVPDLFMKRVKENKNWTLMCPNECPGLS 358
Query: 361 DCWGAEFEKLYTHYEREGKAKKVVQAQNLWFEILTSQIETGTPYMLFKDTCNRKSNQQNL 420
+ WG EFEKLYT YE E KK V AQ+LWF IL SQIETG PYML+KD+CN KSNQ+NL
Sbjct: 359 ETWGEEFEKLYTKYEEENMGKKTVLAQDLWFAILQSQIETGVPYMLYKDSCNAKSNQKNL 418
Query: 421 GTIKSSNLCTEIIEYTSPTETAVCNLASIALPRFV 455
GTIK SNLC EIIEYTSP E AVCNLASIAL +FV
Sbjct: 419 GTIKCSNLCCEIIEYTSPDEVAVCNLASIALCKFV 453
Score = 1019 (363.8 bits), Expect = 3.2e-263, Sum P(2) = 3.2e-263
Identities = 202/345 (58%), Positives = 255/345 (73%)
Query: 480 FDFEKLAEVTAIVTENLNKIIDVNYYPVETARRSNLRHRPIGIGVQGLADTFILLGMAFE 539
F+F+KL E+T I+T NL+KII+ NYYPV+ A+ SN RHRPIGIGVQGLADTF+LL +E
Sbjct: 460 FNFKKLYEITKIITRNLDKIIERNYYPVKEAKTSNTRHRPIGIGVQGLADTFMLLRYPYE 519
Query: 540 SPEAQQLNKDIFETIYYHALKTSSEIAAKEGPYETYHNSPVSKGILQPDMWNV-IPSDRW 598
S A++LNK IFET+YY AL+ S E+A+ GPYE+Y SP S+GILQ DMWN + + W
Sbjct: 520 SDAAKELNKRIFETMYYAALEMSVELASIHGPYESYQGSPASQGILQFDMWNAKVDNKYW 579
Query: 599 DWGVLRDMISKNGVRNSLLVAPMPTASTSQILGNNECFEPYTSNIYSRRVLSGEFVVVNK 658
DW L+ I K+G+RNSLL+APMPTASTSQILGNNE FEPYTSNIY RRVLSGEF VVN
Sbjct: 580 DWDELKAKIRKHGLRNSLLLAPMPTASTSQILGNNESFEPYTSNIYYRRVLSGEFFVVNP 639
Query: 659 HLLHDLTEMGIWSPTIKNKIIYDDGSVQKIPEIPEELKMIYKTVWEIKQMTLVDMAVDRG 718
HLL DL + G+W +K ++I +GS+Q I EIP++LK +YKTVWEIKQ ++DMA DRG
Sbjct: 640 HLLKDLFDRGLWDEDMKQQLIAHNGSIQYISEIPDDLKELYKTVWEIKQKNIIDMAADRG 699
Query: 719 CYIDQSQSLNIHMDQPNFKKVTSLHFRTWSRGLKTGMYYLRSRAAADAIKFTVDTSVFKE 778
+IDQSQSLNI++ +P F K++S+HF W +GLKTG YYLR++AA DAIKFTVDT V K
Sbjct: 700 IFIDQSQSLNIYIQKPTFAKLSSMHFYGWEKGLKTGAYYLRTQAATDAIKFTVDTHVAKN 759
Query: 779 --KPEKPELV----------VDDETKMAQVVCSL--TNREECMAC 809
K + + V + E+ + Q VC L N E+C+ C
Sbjct: 760 AVKLKNADGVQITREVSRETISTESTVTQNVCPLRRNNDEQCLMC 804
>UNIPROTKB|E9PD78 [details] [associations]
symbol:RRM1 "Ribonucleoside-diphosphate reductase"
species:9606 "Homo sapiens" [GO:0005524 "ATP binding" evidence=IEA]
[GO:0005971 "ribonucleoside-diphosphate reductase complex"
evidence=IEA] [GO:0004748 "ribonucleoside-diphosphate reductase
activity, thioredoxin disulfide as acceptor" evidence=IEA]
[GO:0009263 "deoxyribonucleotide biosynthetic process"
evidence=IEA] [GO:0051290 "protein heterotetramerization"
evidence=IEA] [GO:0006260 "DNA replication" evidence=IEA]
InterPro:IPR000788 InterPro:IPR008926 InterPro:IPR013346
InterPro:IPR013509 Pfam:PF00317 Pfam:PF02867 PRINTS:PR01183
PROSITE:PS00089 UniPathway:UPA00326 GO:GO:0005524 GO:GO:0006260
GO:GO:0051290 GO:GO:0009263 GO:GO:0005971 GO:GO:0004748
SUPFAM:SSF48168 TIGRFAMs:TIGR02506 HGNC:HGNC:10451 ChiTaRS:RRM1
EMBL:AC015689 IPI:IPI00943207 ProteinModelPortal:E9PD78 SMR:E9PD78
Ensembl:ENST00000423050 ArrayExpress:E9PD78 Bgee:E9PD78
Uniprot:E9PD78
Length = 695
Score = 1366 (485.9 bits), Expect = 4.3e-259, Sum P(2) = 4.3e-259
Identities = 250/358 (69%), Positives = 298/358 (83%)
Query: 98 IKDMYNHYNERSGLKAPLIADDIYEIIMKNAACLDSEIIXXXXXXXXXXXXKTLERSYLL 157
++D+YN+ N +G +P++A +I++ N L+S II KTLERSYLL
Sbjct: 1 MEDLYNYINPHNGKHSPMVAKSTLDIVLANKDRLNSAIIYDRDFSYNYFGFKTLERSYLL 60
Query: 158 KVQGKVVERPQHMLMRVSIGIHKDDIDSAIKTYHMMSQRWFTHASPTLFNAGTPRPQLSS 217
K+ GKV ERPQHMLMRVS+GIHK+DID+AI+TY+++S+RWFTHASPTLFNAGT RPQLSS
Sbjct: 61 KINGKVAERPQHMLMRVSVGIHKEDIDAAIETYNLLSERWFTHASPTLFNAGTNRPQLSS 120
Query: 218 CFLVCMKDDSIEGIYETLKECAVISKSAGGIGVSVHNIRATGSYIRGTNGTSNGIVPMLR 277
CFL+ MKDDSIEGIY+TLK+CA+ISKSAGGIGV+V IRATGSYI GTNG SNG+VPMLR
Sbjct: 121 CFLLSMKDDSIEGIYDTLKQCALISKSAGGIGVAVSCIRATGSYIAGTNGNSNGLVPMLR 180
Query: 278 VFNDTARYVDQGGGKRKGAFAVYLEPWHADIFEFLNLKKNHGKEEHRARDLFYALWVPDL 337
V+N+TARYVDQGG KR GAFA+YLEPWH DIFEFL+LKKN GKEE RARDLF+ALW+PDL
Sbjct: 181 VYNNTARYVDQGGNKRPGAFAIYLEPWHLDIFEFLDLKKNTGKEEQRARDLFFALWIPDL 240
Query: 338 FMERVQTNGQWSLFCPNEASGLADCWGAEFEKLYTHYEREGKAKKVVQAQNLWFEILTSQ 397
FM+RV+TN WSL CPNE GL + WG EFEKLY YE++G+ +KVV+AQ LW+ I+ SQ
Sbjct: 241 FMKRVETNQDWSLMCPNECPGLDEVWGEEFEKLYASYEKQGRVRKVVKAQQLWYAIIESQ 300
Query: 398 IETGTPYMLFKDTCNRKSNQQNLGTIKSSNLCTEIIEYTSPTETAVCNLASIALPRFV 455
ETGTPYML+KD+CNRKSNQQNLGTIK SNLCTEI+EYTS E AVCNLAS+AL +V
Sbjct: 301 TETGTPYMLYKDSCNRKSNQQNLGTIKCSNLCTEIVEYTSKDEVAVCNLASLALNMYV 358
Score = 1151 (410.2 bits), Expect = 4.3e-259, Sum P(2) = 4.3e-259
Identities = 219/371 (59%), Positives = 276/371 (74%)
Query: 441 TAVCNLASIALPRFVREKDVPVESHPSRIVGSRGSKNRFFDFEKLAEVTAIVTENLNKII 500
T C+ + + + +V V + S + + +DF+KLAEVT +V NLNKII
Sbjct: 325 TIKCSNLCTEIVEYTSKDEVAVCNLASLALNMYVTSEHTYDFKKLAEVTKVVVRNLNKII 384
Query: 501 DVNYYPVETARRSNLRHRPIGIGVQGLADTFILLGMAFESPEAQQLNKDIFETIYYHALK 560
D+NYYPV A SN RHRPIGIGVQGLAD FIL+ FES EAQ LNK IFETIYY AL+
Sbjct: 385 DINYYPVPEACLSNKRHRPIGIGVQGLADAFILMRYPFESAEAQLLNKQIFETIYYGALE 444
Query: 561 TSSEIAAKEGPYETYHNSPVSKGILQPDMWNVIPSDRWDWGVLRDMISKNGVRNSLLVAP 620
S ++A ++GPYETY SPVSKGILQ DMWNV P+D WDW VL++ I+K G+RNSLL+AP
Sbjct: 445 ASCDLAKEQGPYETYEGSPVSKGILQYDMWNVTPTDLWDWKVLKEKIAKYGIRNSLLIAP 504
Query: 621 MPTASTSQILGNNECFEPYTSNIYSRRVLSGEFVVVNKHLLHDLTEMGIWSPTIKNKIIY 680
MPTAST+QILGNNE EPYTSNIY+RRVLSGEF +VN HLL DLTE G+W +KN+II
Sbjct: 505 MPTASTAQILGNNESIEPYTSNIYTRRVLSGEFQIVNPHLLKDLTERGLWHEEMKNQIIA 564
Query: 681 DDGSVQKIPEIPEELKMIYKTVWEIKQMTLVDMAVDRGCYIDQSQSLNIHMDQPNFKKVT 740
+GS+Q IPEIP++LK +YKTVWEI Q T++ MA +RG +IDQSQSLNIH+ +PN+ K+T
Sbjct: 565 CNGSIQSIPEIPDDLKQLYKTVWEISQKTVLKMAAERGAFIDQSQSLNIHIAEPNYGKLT 624
Query: 741 SLHFRTWSRGLKTGMYYLRSRAAADAIKFTVDTSVFKEKPEKPELVVDDETKMAQVVCSL 800
S+HF W +GLKTGMYYLR+R AA+ I+FT++ K+K + + + E A +VCSL
Sbjct: 625 SMHFYGWKQGLKTGMYYLRTRPAANPIQFTLNKEKLKDKEKVSKEEEEKERNTAAMVCSL 684
Query: 801 TNREECMACGS 811
NR+EC+ CGS
Sbjct: 685 ENRDECLMCGS 695
>UNIPROTKB|O61065 [details] [associations]
symbol:RNR1 "Ribonucleoside-diphosphate reductase large
chain" species:5807 "Cryptosporidium parvum" [GO:0004748
"ribonucleoside-diphosphate reductase activity, thioredoxin
disulfide as acceptor" evidence=ISS] [GO:0009263
"deoxyribonucleotide biosynthetic process" evidence=ISS]
InterPro:IPR000788 InterPro:IPR008926 InterPro:IPR013346
InterPro:IPR013509 Pfam:PF00317 Pfam:PF02867 PRINTS:PR01183
PROSITE:PS00089 UniPathway:UPA00326 Pfam:PF03477 GO:GO:0005524
GO:GO:0006260 GO:GO:0009263 InterPro:IPR005144 PROSITE:PS51161
eggNOG:COG0209 GO:GO:0005971 GO:GO:0004748 SUPFAM:SSF48168
TIGRFAMs:TIGR02506 EMBL:AF043243 ProteinModelPortal:O61065
SMR:O61065 STRING:O61065 Uniprot:O61065
Length = 803
Score = 1467 (521.5 bits), Expect = 3.9e-258, Sum P(2) = 3.9e-258
Identities = 271/455 (59%), Positives = 342/455 (75%)
Query: 1 MYVVKRDGRQEAVHFDKITARLKKLSYGLSTEHCDPVLVSQKVCAGVYKGVTTSQLDELX 60
MYVV R G +E V FD+I +R+ KLSYGL DP V+Q V G+Y G+ TS+LDEL
Sbjct: 1 MYVVNRKGEEEPVSFDQILSRITKLSYGLHPL-VDPARVTQAVINGLYSGIKTSELDELA 59
Query: 61 XXXXXXXXXNHPDYASLAARIAVSNLHKNTKKSFSETIKDMYNHYNERSGLKAPLIADDI 120
H D++ LAARI+ SNLHKNT + +YN + + G APLI+ +
Sbjct: 60 SQTCAYMAATHNDFSKLAARISTSNLHKNTSSDIGDVASQLYN-FKDNQGCPAPLISKPV 118
Query: 121 YEIIMKNAACLDSEIIXXXXXXXXXXXXKTLERSYLLKVQGKVVERPQHMLMRVSIGIHK 180
Y+ IM+N ++S+I KTLERSYLLK+ KVVERPQH+LMRVS GIH
Sbjct: 119 YDFIMENRERINSKIDFSKDFEYDYFAFKTLERSYLLKIDNKVVERPQHLLMRVSCGIHC 178
Query: 181 DDIDSAIKTYHMMSQRWFTHASPTLFNAGTPRPQLSSCFLVCMKDDSIEGIYETLKECAV 240
DI++A++TY ++SQ++FTHA+PTLFN+GTPRPQ+SSCFL+ + +DSI GI++TL +CA
Sbjct: 179 GDIEAALETYELLSQKYFTHATPTLFNSGTPRPQMSSCFLLRIPEDSINGIFDTLTKCAN 238
Query: 241 ISKSAGGIGVSVHNIRATGSYIRGTNGTSNGIVPMLRVFNDTARYVDQGGGKRKGAFAVY 300
ISK+AGG+GV+V NIR TGSYIRGTNG SNG++PMLRV+NDTARY+DQGGGKRKGA A+Y
Sbjct: 239 ISKTAGGLGVAVSNIRGTGSYIRGTNGRSNGLIPMLRVYNDTARYIDQGGGKRKGAIAIY 298
Query: 301 LEPWHADIFEFLNLKKNHGKEEHRARDLFYALWVPDLFMERVQTNGQWSLFCPNEASGLA 360
LEPWH D+ EF+ ++KNHGKEE R RDLF ALWVPDLFMERV+ + W+L CP+E GL
Sbjct: 299 LEPWHVDVVEFIEIRKNHGKEEMRCRDLFPALWVPDLFMERVEKDQDWTLMCPDECRGLQ 358
Query: 361 DCWGAEFEKLYTHYEREGKAKKVVQAQNLWFEILTSQIETGTPYMLFKDTCNRKSNQQNL 420
D WG +F+KLY YE++G+ +K ++AQ LWF IL +QIETGTP++ +KD N KSNQ+NL
Sbjct: 359 DVWGDDFKKLYEEYEKQGRGRKTMKAQKLWFLILQAQIETGTPFICYKDAANSKSNQKNL 418
Query: 421 GTIKSSNLCTEIIEYTSPTETAVCNLASIALPRFV 455
GTI SSNLCTEIIEYTS E AVCNLASI LP+FV
Sbjct: 419 GTIVSSNLCTEIIEYTSTDEVAVCNLASIGLPKFV 453
Score = 1041 (371.5 bits), Expect = 3.9e-258, Sum P(2) = 3.9e-258
Identities = 204/345 (59%), Positives = 256/345 (74%)
Query: 477 NRFFDFEKLAEVTAIVTENLNKIIDVNYYPVETARRSNLRHRPIGIGVQGLADTFILLGM 536
N+ FDF+KL EVT ++T NLNK+IDV YY ++ ++SNLRHRP+GIG+QGLAD F++L M
Sbjct: 457 NKTFDFDKLKEVTKVITRNLNKLIDVGYYSLKECKKSNLRHRPLGIGIQGLADCFMMLRM 516
Query: 537 AFESPEAQQLNKDIFETIYYHALKTSSEIAAKEGPYETYHNSPVSKGILQPDMWNVIP-S 595
+ES A++LNK IFE IYY AL S E+A K GPYETY SP SKGILQ DMW V P S
Sbjct: 517 PYESEGAKKLNKQIFEVIYYAALDASCELAEKYGPYETYSGSPASKGILQFDMWGVTPDS 576
Query: 596 DRWDWGVLRDMISKNGVRNSLLVAPMPTASTSQILGNNECFEPYTSNIYSRRVLSGEFVV 655
DW +L+D ISK+G+RNSLL++PMPTASTSQILGNNE FEP+TSNIY RRVLSGEF V
Sbjct: 577 GLCDWDLLKDRISKHGIRNSLLISPMPTASTSQILGNNESFEPFTSNIYHRRVLSGEFFV 636
Query: 656 VNKHLLHDLTEMGIWSPTIKNKIIYDDGSVQKIPEIPEELKMIYKTVWEIKQMTLVDMAV 715
VN HLL+DL E+G+W +K II ++GS+Q I IPE+++ +YKTVWEIKQ T++DMA
Sbjct: 637 VNPHLLNDLLELGLWDDRLKQNIIANNGSIQNILTIPEDIRELYKTVWEIKQKTVIDMAA 696
Query: 716 DRGCYIDQSQSLNIHMDQPNFKKVTSLHFRTWSRGLKTGMYYLRSRAAADAIKFTVDTSV 775
DRG Y+ QSQSLNIHM+ NF K++S+HF W +GLKTG+YYLR+++A I+FTVD +
Sbjct: 697 DRGPYVCQSQSLNIHMENANFAKLSSMHFYGWKKGLKTGIYYLRTQSATRPIQFTVDQQL 756
Query: 776 FK-EKPEKPELVVDDETKM---AQ--VVCSL--TNR---EECMAC 809
K E EK L + + AQ + C L TN EECM C
Sbjct: 757 LKSETKEKDSLETNKRQALEPEAQKLIACPLRPTNMKDDEECMMC 801
>CGD|CAL0002354 [details] [associations]
symbol:RNR3 species:5476 "Candida albicans" [GO:0004748
"ribonucleoside-diphosphate reductase activity, thioredoxin
disulfide as acceptor" evidence=NAS] InterPro:IPR000788
InterPro:IPR008926 InterPro:IPR013346 InterPro:IPR013509
Pfam:PF00317 Pfam:PF02867 PRINTS:PR01183 PROSITE:PS00089
UniPathway:UPA00326 CGD:CAL0002354 Pfam:PF03477 GO:GO:0005524
GO:GO:0006260 KO:K10807 InterPro:IPR005144 PROSITE:PS51161
eggNOG:COG0209 GO:GO:0005971 GO:GO:0004748 SUPFAM:SSF48168
TIGRFAMs:TIGR02506 EMBL:AACQ01000235 EMBL:AACQ01000236
RefSeq:XP_710800.1 RefSeq:XP_710811.1 ProteinModelPortal:Q59M54
SMR:Q59M54 STRING:Q59M54 GeneID:3647580 GeneID:3647591
KEGG:cal:CaO19.13267 KEGG:cal:CaO19.5845 Uniprot:Q59M54
Length = 816
Score = 1239 (441.2 bits), Expect = 7.0e-256, Sum P(3) = 7.0e-256
Identities = 241/449 (53%), Positives = 309/449 (68%)
Query: 8 GRQEAVHFDKITARLKKLSYGLSTEHCDPVLVSQKVCAGVYKGVTTSQLDELXXXXXXXX 67
G +E KI L+++S+ L D ++ S V G+ +T +L
Sbjct: 9 GEEEDFDSVKIHKLLEEVSFNLGDLDLDQIVES--VQRGLPSSLTIEELYTFIAEVIASR 66
Query: 68 XXNHPDYASLAARIAVSNLHKNTKKSFSETIKDMYNHYNERSGLKAPLIADDIYEIIMKN 127
HPDYA LA RI L+ SFSE ++ + + +S +P I+ Y+++ K+
Sbjct: 67 VIYHPDYAILAGRIETRKLYLKVPYSFSENVERLRKYRPRKSNSYSP-ISSAFYKVVKKH 125
Query: 128 AACLDSEIIXXXXXXXXXXXXKTLERSYLLKVQGKVVERPQHMLMRVSIGIHKDDIDSAI 187
LD I KTLE SYLLK+ G+V E PQ++ MRV+IGIH++DI++
Sbjct: 126 GEFLDKVIDKTRDYNLTYFGIKTLESSYLLKIDGEVAELPQYLFMRVAIGIHQNDINAIA 185
Query: 188 KTYHMMSQRWFTHASPTLFNAGTPRPQLSSCFLVCMKDDSIEGIYETLKECAVISKSAGG 247
+TY +MSQ++F HASPTL+NAG+ LSSCFLV MKDDSI+GI++TL E A+ISK++GG
Sbjct: 186 ETYDLMSQKYFIHASPTLYNAGSEFNYLSSCFLVAMKDDSIDGIFKTLNEAALISKASGG 245
Query: 248 IGVSVHNIRATGSYIRGTNGTSNGIVPMLRVFNDTARYVDQGGGKRKGAFAVYLEPWHAD 307
IG+ VHNIR+ GSYI TNG SNG+VPMLRV+N+TARYVDQGGGKR GAFA+Y+EPWH D
Sbjct: 246 IGIHVHNIRSNGSYIASTNGNSNGLVPMLRVYNNTARYVDQGGGKRPGAFAIYIEPWHGD 305
Query: 308 IFEFLNLKKNHGKEEHRARDLFYALWVPDLFMERVQTNGQWSLFCPNEASGLADCWGAEF 367
IF+ L ++KNHG EE R RDLFY LW+PDLFM+RV+ N W+LF PNEA GL+D +G EF
Sbjct: 306 IFDILEMRKNHGNEEMRTRDLFYGLWIPDLFMKRVKENSDWTLFSPNEAVGLSDVYGEEF 365
Query: 368 EKLYTHYEREGKAKKVVQAQNLWFEILTSQIETGTPYMLFKDTCNRKSNQQNLGTIKSSN 427
EKLY YE EG KV A LW IL SQ ETG PYML+KD CN KSNQ+N+GTIKSSN
Sbjct: 366 EKLYCKYESEGFGTKV-SAHKLWLAILHSQTETGGPYMLYKDACNTKSNQKNIGTIKSSN 424
Query: 428 LCTEIIEYTSPTETAVCNLASIALPRFVR 456
LC EI+EY+SP ETAVCNLAS+ALP +++
Sbjct: 425 LCCEIVEYSSPKETAVCNLASLALPTYLK 453
Score = 1227 (437.0 bits), Expect = 7.0e-256, Sum P(3) = 7.0e-256
Identities = 235/389 (60%), Positives = 291/389 (74%)
Query: 384 VQAQNLWFEILTSQIETGTPYMLFKDTCNRKSNQQNLGTIKSSNLCTEIIEYTSPTETAV 443
V A LW IL SQ ETG PYML+KD CN KSNQ+N+GTIKSSNLC EI+EY+SP ETAV
Sbjct: 381 VSAHKLWLAILHSQTETGGPYMLYKDACNTKSNQKNIGTIKSSNLCCEIVEYSSPKETAV 440
Query: 444 CNLASIALPRFVREKDVPVESHPSRIVGSRGSKNRFFDFEKLAEVTAIVTENLNKIIDVN 503
CNLAS+ALP +++ + +G FDFEKL VT ++T NLN++IDV
Sbjct: 441 CNLASLALPTYLKTTE--------DAIG--------FDFEKLHSVTKVLTRNLNRVIDVT 484
Query: 504 YYPVETARRSNLRHRPIGIGVQGLADTFILLGMAFESPEAQQLNKDIFETIYYHALKTSS 563
YPVETA SN RHRPI +GVQGLAD F L + F+S A+ LN IFETIY+ AL+ S
Sbjct: 485 KYPVETAEYSNKRHRPIALGVQGLADLFAELRLPFDSAMAKTLNIQIFETIYHAALEASV 544
Query: 564 EIAAKEGPYETYHNSPVSKGILQPDMWNVIPSDRWDWGVLRDMISKNGVRNSLLVAPMPT 623
E+A KEGPYET+ SP SKGILQ DMW PS +DW L+D I G+RNSLLVAPMPT
Sbjct: 545 ELAMKEGPYETFQGSPASKGILQFDMWKHKPSPMYDWHALKDNIQNFGLRNSLLVAPMPT 604
Query: 624 ASTSQILGNNECFEPYTSNIYSRRVLSGEFVVVNKHLLHDLTEMGIWSPTIKNKIIYDDG 683
ASTSQILG NECFEPYTSN+Y+RRVL+GE+ +VNK+L+ DL ++GIW ++NKII ++G
Sbjct: 605 ASTSQILGFNECFEPYTSNLYNRRVLAGEYQIVNKYLIKDLMDLGIWDSAMRNKIIMENG 664
Query: 684 SVQKIPEIPEELKMIYKTVWEIKQMTLVDMAVDRGCYIDQSQSLNIHMDQPNFKKVTSLH 743
S+Q IP IP+E+K +YKTVWE+ Q ++DMA DRG ++DQSQS+NIH+ P K+TS H
Sbjct: 665 SIQNIPNIPDEIKQLYKTVWELSQKVIIDMAADRGKFVDQSQSMNIHLRNPTIGKLTSCH 724
Query: 744 FRTWSRGLKTGMYYLRSRAAADAIKFTVD 772
F W +GLKTGMYYLR++AA+ AI+FTVD
Sbjct: 725 FYAWEKGLKTGMYYLRTQAASRAIQFTVD 753
Score = 38 (18.4 bits), Expect = 7.0e-256, Sum P(3) = 7.0e-256
Identities = 6/27 (22%), Positives = 13/27 (48%)
Query: 783 PELVVDDETKMAQVVCSLTNREECMAC 809
P+ + D + C++ + E C +C
Sbjct: 788 PDSELYDIHDSTPITCNIEDLESCQSC 814
Score = 37 (18.1 bits), Expect = 2.4e-130, Sum P(3) = 2.4e-130
Identities = 6/19 (31%), Positives = 11/19 (57%)
Query: 765 DAIKFTVDTSVFKEKPEKP 783
D K+ V+T+ + K +P
Sbjct: 482 DVTKYPVETAEYSNKRHRP 500
>UNIPROTKB|Q59M54 [details] [associations]
symbol:RNR3 "Ribonucleoside-diphosphate reductase"
species:237561 "Candida albicans SC5314" [GO:0004748
"ribonucleoside-diphosphate reductase activity, thioredoxin
disulfide as acceptor" evidence=NAS] InterPro:IPR000788
InterPro:IPR008926 InterPro:IPR013346 InterPro:IPR013509
Pfam:PF00317 Pfam:PF02867 PRINTS:PR01183 PROSITE:PS00089
UniPathway:UPA00326 CGD:CAL0002354 Pfam:PF03477 GO:GO:0005524
GO:GO:0006260 KO:K10807 InterPro:IPR005144 PROSITE:PS51161
eggNOG:COG0209 GO:GO:0005971 GO:GO:0004748 SUPFAM:SSF48168
TIGRFAMs:TIGR02506 EMBL:AACQ01000235 EMBL:AACQ01000236
RefSeq:XP_710800.1 RefSeq:XP_710811.1 ProteinModelPortal:Q59M54
SMR:Q59M54 STRING:Q59M54 GeneID:3647580 GeneID:3647591
KEGG:cal:CaO19.13267 KEGG:cal:CaO19.5845 Uniprot:Q59M54
Length = 816
Score = 1239 (441.2 bits), Expect = 7.0e-256, Sum P(3) = 7.0e-256
Identities = 241/449 (53%), Positives = 309/449 (68%)
Query: 8 GRQEAVHFDKITARLKKLSYGLSTEHCDPVLVSQKVCAGVYKGVTTSQLDELXXXXXXXX 67
G +E KI L+++S+ L D ++ S V G+ +T +L
Sbjct: 9 GEEEDFDSVKIHKLLEEVSFNLGDLDLDQIVES--VQRGLPSSLTIEELYTFIAEVIASR 66
Query: 68 XXNHPDYASLAARIAVSNLHKNTKKSFSETIKDMYNHYNERSGLKAPLIADDIYEIIMKN 127
HPDYA LA RI L+ SFSE ++ + + +S +P I+ Y+++ K+
Sbjct: 67 VIYHPDYAILAGRIETRKLYLKVPYSFSENVERLRKYRPRKSNSYSP-ISSAFYKVVKKH 125
Query: 128 AACLDSEIIXXXXXXXXXXXXKTLERSYLLKVQGKVVERPQHMLMRVSIGIHKDDIDSAI 187
LD I KTLE SYLLK+ G+V E PQ++ MRV+IGIH++DI++
Sbjct: 126 GEFLDKVIDKTRDYNLTYFGIKTLESSYLLKIDGEVAELPQYLFMRVAIGIHQNDINAIA 185
Query: 188 KTYHMMSQRWFTHASPTLFNAGTPRPQLSSCFLVCMKDDSIEGIYETLKECAVISKSAGG 247
+TY +MSQ++F HASPTL+NAG+ LSSCFLV MKDDSI+GI++TL E A+ISK++GG
Sbjct: 186 ETYDLMSQKYFIHASPTLYNAGSEFNYLSSCFLVAMKDDSIDGIFKTLNEAALISKASGG 245
Query: 248 IGVSVHNIRATGSYIRGTNGTSNGIVPMLRVFNDTARYVDQGGGKRKGAFAVYLEPWHAD 307
IG+ VHNIR+ GSYI TNG SNG+VPMLRV+N+TARYVDQGGGKR GAFA+Y+EPWH D
Sbjct: 246 IGIHVHNIRSNGSYIASTNGNSNGLVPMLRVYNNTARYVDQGGGKRPGAFAIYIEPWHGD 305
Query: 308 IFEFLNLKKNHGKEEHRARDLFYALWVPDLFMERVQTNGQWSLFCPNEASGLADCWGAEF 367
IF+ L ++KNHG EE R RDLFY LW+PDLFM+RV+ N W+LF PNEA GL+D +G EF
Sbjct: 306 IFDILEMRKNHGNEEMRTRDLFYGLWIPDLFMKRVKENSDWTLFSPNEAVGLSDVYGEEF 365
Query: 368 EKLYTHYEREGKAKKVVQAQNLWFEILTSQIETGTPYMLFKDTCNRKSNQQNLGTIKSSN 427
EKLY YE EG KV A LW IL SQ ETG PYML+KD CN KSNQ+N+GTIKSSN
Sbjct: 366 EKLYCKYESEGFGTKV-SAHKLWLAILHSQTETGGPYMLYKDACNTKSNQKNIGTIKSSN 424
Query: 428 LCTEIIEYTSPTETAVCNLASIALPRFVR 456
LC EI+EY+SP ETAVCNLAS+ALP +++
Sbjct: 425 LCCEIVEYSSPKETAVCNLASLALPTYLK 453
Score = 1227 (437.0 bits), Expect = 7.0e-256, Sum P(3) = 7.0e-256
Identities = 235/389 (60%), Positives = 291/389 (74%)
Query: 384 VQAQNLWFEILTSQIETGTPYMLFKDTCNRKSNQQNLGTIKSSNLCTEIIEYTSPTETAV 443
V A LW IL SQ ETG PYML+KD CN KSNQ+N+GTIKSSNLC EI+EY+SP ETAV
Sbjct: 381 VSAHKLWLAILHSQTETGGPYMLYKDACNTKSNQKNIGTIKSSNLCCEIVEYSSPKETAV 440
Query: 444 CNLASIALPRFVREKDVPVESHPSRIVGSRGSKNRFFDFEKLAEVTAIVTENLNKIIDVN 503
CNLAS+ALP +++ + +G FDFEKL VT ++T NLN++IDV
Sbjct: 441 CNLASLALPTYLKTTE--------DAIG--------FDFEKLHSVTKVLTRNLNRVIDVT 484
Query: 504 YYPVETARRSNLRHRPIGIGVQGLADTFILLGMAFESPEAQQLNKDIFETIYYHALKTSS 563
YPVETA SN RHRPI +GVQGLAD F L + F+S A+ LN IFETIY+ AL+ S
Sbjct: 485 KYPVETAEYSNKRHRPIALGVQGLADLFAELRLPFDSAMAKTLNIQIFETIYHAALEASV 544
Query: 564 EIAAKEGPYETYHNSPVSKGILQPDMWNVIPSDRWDWGVLRDMISKNGVRNSLLVAPMPT 623
E+A KEGPYET+ SP SKGILQ DMW PS +DW L+D I G+RNSLLVAPMPT
Sbjct: 545 ELAMKEGPYETFQGSPASKGILQFDMWKHKPSPMYDWHALKDNIQNFGLRNSLLVAPMPT 604
Query: 624 ASTSQILGNNECFEPYTSNIYSRRVLSGEFVVVNKHLLHDLTEMGIWSPTIKNKIIYDDG 683
ASTSQILG NECFEPYTSN+Y+RRVL+GE+ +VNK+L+ DL ++GIW ++NKII ++G
Sbjct: 605 ASTSQILGFNECFEPYTSNLYNRRVLAGEYQIVNKYLIKDLMDLGIWDSAMRNKIIMENG 664
Query: 684 SVQKIPEIPEELKMIYKTVWEIKQMTLVDMAVDRGCYIDQSQSLNIHMDQPNFKKVTSLH 743
S+Q IP IP+E+K +YKTVWE+ Q ++DMA DRG ++DQSQS+NIH+ P K+TS H
Sbjct: 665 SIQNIPNIPDEIKQLYKTVWELSQKVIIDMAADRGKFVDQSQSMNIHLRNPTIGKLTSCH 724
Query: 744 FRTWSRGLKTGMYYLRSRAAADAIKFTVD 772
F W +GLKTGMYYLR++AA+ AI+FTVD
Sbjct: 725 FYAWEKGLKTGMYYLRTQAASRAIQFTVD 753
Score = 38 (18.4 bits), Expect = 7.0e-256, Sum P(3) = 7.0e-256
Identities = 6/27 (22%), Positives = 13/27 (48%)
Query: 783 PELVVDDETKMAQVVCSLTNREECMAC 809
P+ + D + C++ + E C +C
Sbjct: 788 PDSELYDIHDSTPITCNIEDLESCQSC 814
Score = 37 (18.1 bits), Expect = 2.4e-130, Sum P(3) = 2.4e-130
Identities = 6/19 (31%), Positives = 11/19 (57%)
Query: 765 DAIKFTVDTSVFKEKPEKP 783
D K+ V+T+ + K +P
Sbjct: 482 DVTKYPVETAEYSNKRHRP 500
>UNIPROTKB|P50647 [details] [associations]
symbol:RNR1 "Ribonucleoside-diphosphate reductase large
subunit" species:5838 "Plasmodium falciparum FCR-3/Gambia"
[GO:0004748 "ribonucleoside-diphosphate reductase activity,
thioredoxin disulfide as acceptor" evidence=ISS] [GO:0009263
"deoxyribonucleotide biosynthetic process" evidence=ISS]
InterPro:IPR000788 InterPro:IPR008926 InterPro:IPR013346
InterPro:IPR013509 Pfam:PF00317 Pfam:PF02867 PRINTS:PR01183
PROSITE:PS00089 UniPathway:UPA00326 Pfam:PF03477 GO:GO:0005524
GO:GO:0006260 GO:GO:0009263 InterPro:IPR005144 PROSITE:PS51161
GO:GO:0005971 GO:GO:0004748 SUPFAM:SSF48168 TIGRFAMs:TIGR02506
EMBL:AF205580 PIR:B48687 ProteinModelPortal:P50647 SMR:P50647
Uniprot:P50647
Length = 804
Score = 1480 (526.0 bits), Expect = 1.6e-252, Sum P(2) = 1.6e-252
Identities = 280/455 (61%), Positives = 342/455 (75%)
Query: 1 MYVVKRDGRQEAVHFDKITARLKKLSYGLSTEHCDPVLVSQKVCAGVYKGVTTSQLDELX 60
MYV+ R G +E + FD+I R+++LSYGL P V+Q V G+Y + T +LDEL
Sbjct: 1 MYVLNRKGEEEDISFDQILKRIQRLSYGLHKLGEYPACVTQGVINGMYSSIKTCELDELA 60
Query: 61 XXXXXXXXXNHPDYASLAARIAVSNLHKNTKKSFSETIKDMYNHYNERSGLKAPLIADDI 120
HPD++ LAARI NLHKNT +E + +Y Y + G A LI+ ++
Sbjct: 61 AQTCAYMATTHPDFSILAARITTDNLHKNTSDDVAEVAEALYT-YKDGRGRPASLISKEV 119
Query: 121 YEIIMKNAACLDSEIIXXXXXXXXXXXXKTLERSYLLKVQGKVVERPQHMLMRVSIGIHK 180
Y+ I+ + L+ EI KTLERSYLL++ K++ERPQH+LMRVSIGIH
Sbjct: 120 YDFILLHKVRLNKEIDYTTHFNYDYFGFKTLERSYLLRINNKIIERPQHLLMRVSIGIHI 179
Query: 181 DDIDSAIKTYHMMSQRWFTHASPTLFNAGTPRPQLSSCFLVCMKDDSIEGIYETLKECAV 240
DDID A++TYH+MSQ++FTHA+PTLFN+GTPRPQ+SSCFL+ MK DSIEGI+ETLK+CA+
Sbjct: 180 DDIDKALETYHLMSQKYFTHATPTLFNSGTPRPQMSSCFLLSMKADSIEGIFETLKQCAL 239
Query: 241 ISKSAGGIGVSVHNIRATGSYIRGTNGTSNGIVPMLRVFNDTARYVDQGGGKRKGAFAVY 300
ISK+AGGIGV+V +IR SYIRGTNG SNG+VPMLRVFNDTARYVDQGGGKRKG++AVY
Sbjct: 240 ISKTAGGIGVAVQDIRGQNSYIRGTNGISNGLVPMLRVFNDTARYVDQGGGKRKGSYAVY 299
Query: 301 LEPWHADIFEFLNLKKNHGKEEHRARDLFYALWVPDLFMERVQTNGQWSLFCPNEASGLA 360
+EPWH+DIFEFL+L+KNHGKEE RARDLFYA+WVPDLFM+RV+ N W+L CPNE GL+
Sbjct: 300 IEPWHSDIFEFLDLRKNHGKEELRARDLFYAVWVPDLFMKRVKENKNWTLMCPNECPGLS 359
Query: 361 DCWGAEFEKLYTHYEREGKAKKVVQAQNLWFEILTSQIETGTPYMLFKDTCNRKSNQQNL 420
+ WG EFEKLYT YE E KK V AQ+LWF IL SQIETG P L+KD+CN K + NL
Sbjct: 360 ETWGEEFEKLYTKYEEENMGKKTVLAQDLWFAILQSQIETGVPIYLYKDSCNAKPIK-NL 418
Query: 421 GTIKSSNLCTEIIEYTSPTETAVCNLASIALPRFV 455
GTIK SNLC EIIEYTSP E AVCNLASIAL +FV
Sbjct: 419 GTIKCSNLCCEIIEYTSPDEVAVCNLASIALCKFV 453
Score = 975 (348.3 bits), Expect = 1.6e-252, Sum P(2) = 1.6e-252
Identities = 187/299 (62%), Positives = 234/299 (78%)
Query: 480 FDFEKLAEVTAIVTENLNKIIDVNYYPVETARRSNLRHRPIGIGVQGLADTFILLGMAFE 539
F+F+KL E+T I+T NL+KII+ NYYPV+ A+ SN RHRPIGIGVQGLADTF+LL +E
Sbjct: 460 FNFKKLYEITKIITRNLDKIIERNYYPVKEAKTSNTRHRPIGIGVQGLADTFMLLRYLYE 519
Query: 540 SPEAQQLNKDIFETIYYHALKTSSEIAAKEGPYETYHNSPVSKGILQPDMWNV-IPSDRW 598
S A++LNK I+ET+YY AL+ S + + GPYE+Y SP S+GILQ DMWN + + W
Sbjct: 520 SDAAKELNKRIYETMYYAALEMSVDWL-QSGPYESYQGSPGSQGILQFDMWNAKVDNKYW 578
Query: 599 DWGVLRDMISKNGVRNSLLVAPMPTASTSQILGNNECFEPYTSNIYSRRVLSGEFVVVNK 658
DW L+ I+K G+RN LL+APMPTASTSQILGNNE FEPYTSNIY RRVLSGEF VVN
Sbjct: 579 DWDELKLKIAKTGLRNLLLLAPMPTASTSQILGNNESFEPYTSNIYYRRVLSGEFFVVNP 638
Query: 659 HLLHDLTEMGIWSPTIKNKIIYDDGSVQKIPEIPEELKMIYKTVWEIKQMTLVDMAVDRG 718
HLL DL + G+W +K ++I +GS+Q I EIP++LK +YKTVWEIKQ ++DMA DRG
Sbjct: 639 HLLKDLFDRGLWDEDMKQQLIAHNGSIQYISEIPDDLKELYKTVWEIKQKNIIDMAADRG 698
Query: 719 CYIDQSQSLNIHMDQPNFKKVTSLHFRTWSRGLKTGMYYLRSRAAADAIKFTVDTSVFK 777
+IDQSQSLNI++ +P F K++S+HF W +GLKTG YYLR++AA DAIKFTVDT V K
Sbjct: 699 YFIDQSQSLNIYIQKPTFAKLSSMHFYGWEKGLKTGAYYLRTQAATDAIKFTVDTHVAK 757
>UNIPROTKB|O15909 [details] [associations]
symbol:RNR1 "Ribonucleoside-diphosphate reductase large
subunit" species:5702 "Trypanosoma brucei brucei" [GO:0004748
"ribonucleoside-diphosphate reductase activity, thioredoxin
disulfide as acceptor" evidence=ISS] [GO:0009263
"deoxyribonucleotide biosynthetic process" evidence=ISS]
InterPro:IPR000788 InterPro:IPR008926 InterPro:IPR013346
InterPro:IPR013509 Pfam:PF00317 Pfam:PF02867 PRINTS:PR01183
PROSITE:PS00089 UniPathway:UPA00326 Pfam:PF03477 GO:GO:0005524
GO:GO:0006260 GO:GO:0009263 InterPro:IPR005144 PROSITE:PS51161
GO:GO:0005971 GO:GO:0004748 SUPFAM:SSF48168 TIGRFAMs:TIGR02506
EMBL:U80910 ProteinModelPortal:O15909 SMR:O15909
EuPathDB:TriTrypDB:Tb11.02.5720 EuPathDB:TriTrypDB:Tb427tmp.02.5720
Uniprot:O15909
Length = 838
Score = 2285 (809.4 bits), Expect = 5.4e-237, P = 5.4e-237
Identities = 453/800 (56%), Positives = 576/800 (72%)
Query: 3 VVKRDGRQEAVHFDKITARLKKLSYGLSTEHCDPVLVSQKVCAGVYKGVTTSQLDELXXX 62
V KRDG E + +R+ L G+ + + D + + V GV +G++TS LDEL
Sbjct: 8 VTKRDGSVEPYDEKVVRSRIVNLMSGIDSYYVDVDDLVRVVGEGVREGMSTSMLDELLAE 67
Query: 63 XXXXXXXNHPDYASLAARIAVSNLHKNTKKSFSETIKDMYNHYNERSGLKAPLIADDIYE 122
HPDY LA R+AV+ LHK T +S ++ + ++ H ++ + APLI++++++
Sbjct: 68 TAAYCVTKHPDYGLLAGRLAVTALHKTTTESVLDSFRVLHEHVSQATKRHAPLISEELWD 127
Query: 123 IIMKNAACLDSEIIXXXXXXXXXXXXKTLERSYLLKV-QGK----VVERPQHMLMRVSIG 177
I K++A L I KTLERSYLL+V +G+ VVERPQ M +RV++G
Sbjct: 128 IANKHSAALQQIINYERDFDFEYFGYKTLERSYLLRVHKGRGVMEVVERPQQMFLRVALG 187
Query: 178 IHKDDIDSAIKTYHMMSQRWFTHASPTLFNAGTPRPQLSSCFLVCMKDDSIEGIYETLKE 237
IH +D++ +TY MSQ +FTHA+PTLFNAGTP PQ+SSCFLV M++DSI+GIY+TLK+
Sbjct: 188 IHGEDLERVKETYDYMSQGFFTHATPTLFNAGTPFPQMSSCFLVAMREDSIDGIYDTLKQ 247
Query: 238 CAVISKSAGGIGVSVHNIRATGSYIRGTNGTSNGIVPMLRVFNDTARYVDQGGGKRKGAF 297
CA+ISKSAGGIG+ +HNIRA GSYI GTNGTSNG+VPMLRV+N+TARYVDQGGGKRKGAF
Sbjct: 248 CAIISKSAGGIGIHMHNIRAAGSYIAGTNGTSNGLVPMLRVWNNTARYVDQGGGKRKGAF 307
Query: 298 AVYLEPWHADIFEFLNLKKNHGKEEHRARDLFYALWVPDLFMERVQTNGQWSLFCPNEAS 357
A+YLEPWHADIF FL LKKN GKE+ RARDLFY LW+PDLFMERV+++G W+L PN A
Sbjct: 308 AIYLEPWHADIFGFLLLKKNTGKEDQRARDLFYGLWIPDLFMERVESHGTWTLMDPNTAP 367
Query: 358 GLADCWGAEFEKLYTHYEREGKAKKVVQAQNLWFEILTSQIETGTPYMLFKDTCNRKSNQ 417
L+DC+G EF LY YEREG+ + +QAQ LWF IL SQ+ETG P+ML+KD CN KSNQ
Sbjct: 368 FLSDCYGQEFTDLYERYEREGRGVRTIQAQELWFLILESQVETGVPFMLYKDACNFKSNQ 427
Query: 418 QNLGTIKSSNLCTEIIEYTSPTETAVCNLASIALPRFVREKDVPVESHPSRIVGSRGSKN 477
+NLGTIK SNLCTEI+EYTS E AVCNLASIALPRFV++ G+
Sbjct: 428 KNLGTIKCSNLCTEIVEYTSRDEVAVCNLASIALPRFVKD----------------GA-- 469
Query: 478 RFFDFEKLAEVTAIVTENLNKIIDVNYYPVETARRSNLRHRPIGIGVQGLADTFILLGMA 537
FD+ L EVT +VT NLN++ID N+YPV AR SNLRHRP+GIGVQGLAD F LL +
Sbjct: 470 --FDYVALKEVTKVVTRNLNRVIDRNHYPVCEARYSNLRHRPVGIGVQGLADAFALLSLP 527
Query: 538 FESPEAQQLNKDIFETIYYHALKTSSEIAAKEGPYETYHNSPVSKGILQPDMWNV----- 592
F PEA++LN+ IFETIY A++ S+E+A K+GPYET+ SP S+G LQ D+W+
Sbjct: 528 FAHPEAKKLNRQIFETIYIAAVEASTELAEKDGPYETFKGSPASEGKLQFDLWDEERRIR 587
Query: 593 -IPSDR-------WDWGVLRDMISKNGVRNSLLVAPMPTASTSQILGNNECFEPYTSNIY 644
+ D WDW L++ + K G+RNSLL+APMPTASTSQILGNNEC EP+TSNIY
Sbjct: 588 GMNEDSVHSHCGLWDWDSLKERVVKVGMRNSLLIAPMPTASTSQILGNNECIEPFTSNIY 647
Query: 645 SRRVLSGEFVVVNKHLLHDLTEMGIWSPTIKNKIIYDDGSVQKIPEIPEELKMIYKTVWE 704
RRVLSGEF VVNKHL+ +L + +W+ ++ KII +GSV I EIPE ++ +YK VWE
Sbjct: 648 VRRVLSGEFPVVNKHLVKELIRLRLWNDDMRRKIIALNGSVSGIKEIPERIRELYKVVWE 707
Query: 705 IKQMTLVDMAVDRGCYIDQSQSLNIHMDQPNFKKVTSLHFRTWSRGLKTGMYYLRSRAAA 764
I+Q L+DMA DRG YIDQSQSLN+ + P ++TS+HF +W +GLKTGMYYLRS+ AA
Sbjct: 708 IRQKDLIDMAADRGRYIDQSQSLNLFLATPTSSQLTSMHFYSWKKGLKTGMYYLRSQPAA 767
Query: 765 DAIKFTVDTSVFKEKPEKPE 784
DAIKFT+D KE P KP+
Sbjct: 768 DAIKFTLDPKAMKELP-KPD 786
>UNIPROTKB|F1SUZ5 [details] [associations]
symbol:F1SUZ5 "Uncharacterized protein" species:9823 "Sus
scrofa" [GO:0006260 "DNA replication" evidence=IEA] [GO:0005971
"ribonucleoside-diphosphate reductase complex" evidence=IEA]
[GO:0004748 "ribonucleoside-diphosphate reductase activity,
thioredoxin disulfide as acceptor" evidence=IEA] InterPro:IPR000788
InterPro:IPR008926 InterPro:IPR013346 Pfam:PF02867 PRINTS:PR01183
PROSITE:PS00089 Pfam:PF03477 GO:GO:0006260 InterPro:IPR005144
PROSITE:PS51161 GO:GO:0005971 GO:GO:0004748 SUPFAM:SSF48168
TIGRFAMs:TIGR02506 GeneTree:ENSGT00390000001372 EMBL:CU467106
EMBL:CU466349 Ensembl:ENSSSCT00000016142 OMA:XRPGAFA Uniprot:F1SUZ5
Length = 789
Score = 1154 (411.3 bits), Expect = 8.1e-219, Sum P(3) = 8.1e-219
Identities = 219/371 (59%), Positives = 276/371 (74%)
Query: 441 TAVCNLASIALPRFVREKDVPVESHPSRIVGSRGSKNRFFDFEKLAEVTAIVTENLNKII 500
T C+ + + + +V V + S + + +DF KLAEVT ++ NLNKII
Sbjct: 420 TIKCSNLCTEIVEYTSKDEVAVCNLASLALNMYVTSEHTYDFTKLAEVTKVIVRNLNKII 479
Query: 501 DVNYYPVETARRSNLRHRPIGIGVQGLADTFILLGMAFESPEAQQLNKDIFETIYYHALK 560
D+NYYP+ A SN RHRPIGIGVQGLAD FIL+ FESPEAQ LNK IFETIYY AL+
Sbjct: 480 DINYYPIPEASLSNKRHRPIGIGVQGLADAFILMRYPFESPEAQLLNKQIFETIYYGALE 539
Query: 561 TSSEIAAKEGPYETYHNSPVSKGILQPDMWNVIPSDRWDWGVLRDMISKNGVRNSLLVAP 620
S ++A + GPYETY SPVSKGILQ DMWNV P+D WDW +L++ I+K G+RNSLL+AP
Sbjct: 540 ASCDLAKEYGPYETYEGSPVSKGILQYDMWNVTPTDLWDWKLLKEKIAKYGIRNSLLIAP 599
Query: 621 MPTASTSQILGNNECFEPYTSNIYSRRVLSGEFVVVNKHLLHDLTEMGIWSPTIKNKIIY 680
MPTAST+QILGNNE EPYTSNIY+RRVLSGEF +VN HLL DLTE G+W+ +KN+II
Sbjct: 600 MPTASTAQILGNNESIEPYTSNIYTRRVLSGEFQIVNPHLLKDLTERGLWNEEMKNQIIA 659
Query: 681 DDGSVQKIPEIPEELKMIYKTVWEIKQMTLVDMAVDRGCYIDQSQSLNIHMDQPNFKKVT 740
+GS+Q IPEIP++LK +YKTVWEI Q T++ MA +RG +IDQSQSLNIH+ +PN+ K+T
Sbjct: 660 CNGSIQSIPEIPDDLKQLYKTVWEISQKTVLKMAAERGAFIDQSQSLNIHIAEPNYGKLT 719
Query: 741 SLHFRTWSRGLKTGMYYLRSRAAADAIKFTVDTSVFKEKPEKPELVVDDETKMAQVVCSL 800
S+HF W +GLKTGMYYLR+R AA+ I+FT++ K+K EK + E A +VCSL
Sbjct: 720 SMHFYGWKQGLKTGMYYLRTRPAANPIQFTLNKEKLKDK-EKVSKEEEKERNTAAMVCSL 778
Query: 801 TNREECMACGS 811
NR+EC+ CGS
Sbjct: 779 ENRDECLMCGS 789
Score = 668 (240.2 bits), Expect = 8.1e-219, Sum P(3) = 8.1e-219
Identities = 120/163 (73%), Positives = 137/163 (84%)
Query: 293 RKGAFAVYLEPWHADIFEFLNLKKNHGKEEHRARDLFYALWVPDLFMERVQTNGQWSLFC 352
R GAFA+YLEPWH DIFEFL+LKKN GKEE RARDLF+ALW+PDLFM+RV+TN WSL C
Sbjct: 291 RPGAFAIYLEPWHLDIFEFLDLKKNTGKEEQRARDLFFALWIPDLFMKRVETNQDWSLMC 350
Query: 353 PNEASGLADCWGAEFEKLYTHYEREGKAKKVVQAQNLWFEILTSQIETGTPYMLFKDTCN 412
PNE GL + WG EFEKLY YER+G +KVV+AQ LW+ I+ SQ ETGTPYML+KD+CN
Sbjct: 351 PNECPGLDEVWGEEFEKLYESYERQGHVRKVVKAQQLWYAIIESQTETGTPYMLYKDSCN 410
Query: 413 RKSNQQNLGTIKSSNLCTEIIEYTSPTETAVCNLASIALPRFV 455
RKSNQQNLGTIK SNLCTEI+EYTS E AVCNLAS+AL +V
Sbjct: 411 RKSNQQNLGTIKCSNLCTEIVEYTSKDEVAVCNLASLALNMYV 453
Score = 331 (121.6 bits), Expect = 8.1e-219, Sum P(3) = 8.1e-219
Identities = 67/161 (41%), Positives = 93/161 (57%)
Query: 7 DGRQEAVHFDKITARLKKLSYGLSTEHCDPVLVSQKVCAGVYKGVTTSQLDELXXXXXXX 66
DGRQE V FDKIT+R++KL YGL+ + DP ++ KV G+Y GVTT +LD L
Sbjct: 7 DGRQERVMFDKITSRIQKLCYGLNMDFVDPAQITMKVIQGLYSGVTTVELDTLAAETAAT 66
Query: 67 XXXNHPDYASLAARIAVSNLHKNTKKSFSETIKDMYNHYNERSGLKAPLIADDIYEIIMK 126
HPDYA LAARIAVSNLHK TKK FS+ ++D++N+ N +G +P++A +I++
Sbjct: 67 LTTKHPDYAILAARIAVSNLHKETKKVFSDVMEDLFNYINPHNGKHSPMVARSTLDIVLA 126
Query: 127 NAACLDSEIIXXXXXXXXXXXXKTLERSYLLKVQGKVVERP 167
N + II R+Y+ G +RP
Sbjct: 127 NKDKIQCFIILKCIFPELFCNTHVCVRAYIYFQGGNKTDRP 167
>UNIPROTKB|E9PL69 [details] [associations]
symbol:RRM1 "Ribonucleoside-diphosphate reductase large
subunit" species:9606 "Homo sapiens" [GO:0005971
"ribonucleoside-diphosphate reductase complex" evidence=IEA]
[GO:0006260 "DNA replication" evidence=IEA] [GO:0004748
"ribonucleoside-diphosphate reductase activity, thioredoxin
disulfide as acceptor" evidence=IEA] [GO:0009263
"deoxyribonucleotide biosynthetic process" evidence=IEA]
[GO:0017076 "purine nucleotide binding" evidence=IEA] [GO:0051290
"protein heterotetramerization" evidence=IEA] InterPro:IPR000788
InterPro:IPR013346 Pfam:PF02867 PRINTS:PR01183 PROSITE:PS00089
GO:GO:0006260 GO:GO:0051290 GO:GO:0017076 GO:GO:0009263
GO:GO:0005971 GO:GO:0004748 TIGRFAMs:TIGR02506 HGNC:HGNC:10451
ChiTaRS:RRM1 EMBL:AC015689 IPI:IPI01008934
ProteinModelPortal:E9PL69 SMR:E9PL69 Ensembl:ENST00000534285
ArrayExpress:E9PL69 Bgee:E9PL69 Uniprot:E9PL69
Length = 570
Score = 1151 (410.2 bits), Expect = 2.1e-217, Sum P(2) = 2.1e-217
Identities = 219/371 (59%), Positives = 276/371 (74%)
Query: 441 TAVCNLASIALPRFVREKDVPVESHPSRIVGSRGSKNRFFDFEKLAEVTAIVTENLNKII 500
T C+ + + + +V V + S + + +DF+KLAEVT +V NLNKII
Sbjct: 200 TIKCSNLCTEIVEYTSKDEVAVCNLASLALNMYVTSEHTYDFKKLAEVTKVVVRNLNKII 259
Query: 501 DVNYYPVETARRSNLRHRPIGIGVQGLADTFILLGMAFESPEAQQLNKDIFETIYYHALK 560
D+NYYPV A SN RHRPIGIGVQGLAD FIL+ FES EAQ LNK IFETIYY AL+
Sbjct: 260 DINYYPVPEACLSNKRHRPIGIGVQGLADAFILMRYPFESAEAQLLNKQIFETIYYGALE 319
Query: 561 TSSEIAAKEGPYETYHNSPVSKGILQPDMWNVIPSDRWDWGVLRDMISKNGVRNSLLVAP 620
S ++A ++GPYETY SPVSKGILQ DMWNV P+D WDW VL++ I+K G+RNSLL+AP
Sbjct: 320 ASCDLAKEQGPYETYEGSPVSKGILQYDMWNVTPTDLWDWKVLKEKIAKYGIRNSLLIAP 379
Query: 621 MPTASTSQILGNNECFEPYTSNIYSRRVLSGEFVVVNKHLLHDLTEMGIWSPTIKNKIIY 680
MPTAST+QILGNNE EPYTSNIY+RRVLSGEF +VN HLL DLTE G+W +KN+II
Sbjct: 380 MPTASTAQILGNNESIEPYTSNIYTRRVLSGEFQIVNPHLLKDLTERGLWHEEMKNQIIA 439
Query: 681 DDGSVQKIPEIPEELKMIYKTVWEIKQMTLVDMAVDRGCYIDQSQSLNIHMDQPNFKKVT 740
+GS+Q IPEIP++LK +YKTVWEI Q T++ MA +RG +IDQSQSLNIH+ +PN+ K+T
Sbjct: 440 CNGSIQSIPEIPDDLKQLYKTVWEISQKTVLKMAAERGAFIDQSQSLNIHIAEPNYGKLT 499
Query: 741 SLHFRTWSRGLKTGMYYLRSRAAADAIKFTVDTSVFKEKPEKPELVVDDETKMAQVVCSL 800
S+HF W +GLKTGMYYLR+R AA+ I+FT++ K+K + + + E A +VCSL
Sbjct: 500 SMHFYGWKQGLKTGMYYLRTRPAANPIQFTLNKEKLKDKEKVSKEEEEKERNTAAMVCSL 559
Query: 801 TNREECMACGS 811
NR+EC+ CGS
Sbjct: 560 ENRDECLMCGS 570
Score = 972 (347.2 bits), Expect = 2.1e-217, Sum P(2) = 2.1e-217
Identities = 177/233 (75%), Positives = 203/233 (87%)
Query: 223 MKDDSIEGIYETLKECAVISKSAGGIGVSVHNIRATGSYIRGTNGTSNGIVPMLRVFNDT 282
MKDDSIEGIY+TLK+CA+ISKSAGGIGV+V IRATGSYI GTNG SNG+VPMLRV+N+T
Sbjct: 1 MKDDSIEGIYDTLKQCALISKSAGGIGVAVSCIRATGSYIAGTNGNSNGLVPMLRVYNNT 60
Query: 283 ARYVDQGGGKRKGAFAVYLEPWHADIFEFLNLKKNHGKEEHRARDLFYALWVPDLFMERV 342
ARYVDQGG KR GAFA+YLEPWH DIFEFL+LKKN GKEE RARDLF+ALW+PDLFM+RV
Sbjct: 61 ARYVDQGGNKRPGAFAIYLEPWHLDIFEFLDLKKNTGKEEQRARDLFFALWIPDLFMKRV 120
Query: 343 QTNGQWSLFCPNEASGLADCWGAEFEKLYTHYEREGKAKKVVQAQNLWFEILTSQIETGT 402
+TN WSL CPNE GL + WG EFEKLY YE++G+ +KVV+AQ LW+ I+ SQ ETGT
Sbjct: 121 ETNQDWSLMCPNECPGLDEVWGEEFEKLYASYEKQGRVRKVVKAQQLWYAIIESQTETGT 180
Query: 403 PYMLFKDTCNRKSNQQNLGTIKSSNLCTEIIEYTSPTETAVCNLASIALPRFV 455
PYML+KD+CNRKSNQQNLGTIK SNLCTEI+EYTS E AVCNLAS+AL +V
Sbjct: 181 PYMLYKDSCNRKSNQQNLGTIKCSNLCTEIVEYTSKDEVAVCNLASLALNMYV 233
>UNIPROTKB|Q8SR37 [details] [associations]
symbol:ECU10_0920 "Ribonucleoside-diphosphate reductase
large chain" species:284813 "Encephalitozoon cuniculi GB-M1"
[GO:0004748 "ribonucleoside-diphosphate reductase activity,
thioredoxin disulfide as acceptor" evidence=ISS] [GO:0009263
"deoxyribonucleotide biosynthetic process" evidence=ISS]
InterPro:IPR000788 InterPro:IPR008926 InterPro:IPR013346
InterPro:IPR013509 Pfam:PF00317 Pfam:PF02867 PRINTS:PR01183
PROSITE:PS00089 UniPathway:UPA00326 GO:GO:0005524 GO:GO:0006260
GO:GO:0009263 KO:K10807 eggNOG:COG0209 GO:GO:0005971 GO:GO:0004748
SUPFAM:SSF48168 HOGENOM:HOG000057035 TIGRFAMs:TIGR02506 OMA:YKYGVKT
EMBL:AL590449 RefSeq:NP_586207.1 ProteinModelPortal:Q8SR37
SMR:Q8SR37 STRING:Q8SR37 PRIDE:Q8SR37 GeneID:859856
GenomeReviews:AL590449_GR KEGG:ecu:ECU10_0920 Uniprot:Q8SR37
Length = 768
Score = 1077 (384.2 bits), Expect = 8.1e-203, Sum P(2) = 8.1e-203
Identities = 207/474 (43%), Positives = 305/474 (64%)
Query: 9 RQEAVHFDKITARLKKLSYGLSTEHCDPVLVSQKVCAGVYKGVTTSQLDELXXXXXXXXX 68
+ E + D I +R++ L H D + +++ +G + +T + +
Sbjct: 11 KSEKLGIDLIRSRIEGYVKDLKLRHVDVDELVERIVSGWCEDMTRKETIDYCSETAASMI 70
Query: 69 XNHPDYASLAARIAVSNLHKNTKKSFSETIKDMYNHYNERSGLKAPLIADDIYEIIMKNA 128
HP+Y +++RI VS +H+ T SF E IK + H ++++++Y II+++
Sbjct: 71 TKHPEYGQISSRIIVSYIHEITMDSFVEKIKYIQKHRG--------MVSEEMYGIILEHG 122
Query: 129 ACLDSEIIXXXXXXXXXXXXKTLERSYLLKVQGKVVERPQHMLMRVSIGIHKDDIDSAIK 188
++ I TL +SYL+KV +++ERPQ M MRV++ IHK D + +
Sbjct: 123 ETIEGMINYENDFLFSYFGILTLMKSYLIKVGEEIIERPQDMFMRVALQIHKTDFEKVRE 182
Query: 189 TYHMMSQRWFTHASPTLFNAGTPRPQLSSCFLVCMKDDSIEGIYETLKECAVISKSAGGI 248
Y+++S +FTHA+PTL+N+ PQL+SCFL+ ++DSIEG+Y + + A+I+K +GGI
Sbjct: 183 VYNLLSGHYFTHATPTLYNSCLKNPQLASCFLITPREDSIEGVYHMINQAAIITKYSGGI 242
Query: 249 GVSVHNIRATGSYIRGTNGTSNGIVPMLRVFNDTARYVDQGGGKRKGAFAVYLEPWHADI 308
G+++H IR+ GS +R T G SNGI+P+++V N T RY++QG +R G+ A++LEPWH +I
Sbjct: 243 GLNLHGIRSKGSSLRSTGGRSNGIIPLIQVLNATKRYINQGAERRPGSIAIFLEPWHMEI 302
Query: 309 FEFLNLKKNHGKEEHRARDLFYALWVPDLFMERVQTNGQWSLFCPNEASGLADCWGAEFE 368
F+FL L+KN G EE RARD+F ALW+ DLFMERV+ N +WSLFCP++A GL+D WG EF
Sbjct: 303 FDFLELRKNTGPEEFRARDIFTALWINDLFMERVKNNEEWSLFCPSQAVGLSDVWGEEFN 362
Query: 369 KLYTHYEREGKAKKVVQAQNLWFEILTSQIETGTPYMLFKDTCNRKSNQQNLGTIKSSNL 428
LY YE+ ++ VV AQ LW I+ +QIETGTPYM +KD CNR SNQQ+LGTIKSSNL
Sbjct: 363 ALYCKYEKT-ISRTVVPAQKLWKAIIEAQIETGTPYMCYKDACNRLSNQQHLGTIKSSNL 421
Query: 429 CTEIIEYTSPTETAVCNLASIALPRFVREKDVPVESHPSRIVGSRGSKNRFFDF 482
C EI+EY+S ET+VCNLASI LP FV++ E+ + + NR DF
Sbjct: 422 CAEIVEYSSGEETSVCNLASICLPMFVKDGWFDFEAFRRVVKILTVNLNRVIDF 475
Score = 908 (324.7 bits), Expect = 8.1e-203, Sum P(2) = 8.1e-203
Identities = 173/318 (54%), Positives = 228/318 (71%)
Query: 476 KNRFFDFEKLAEVTAIVTENLNKIIDVNYYPVETARRSNLRHRPIGIGVQGLADTFILLG 535
K+ +FDFE V I+T NLN++ID NYYPVE ARRSN+R+RPIGIGVQGLAD F +L
Sbjct: 449 KDGWFDFEAFRRVVKILTVNLNRVIDFNYYPVEEARRSNMRNRPIGIGVQGLADLFAILR 508
Query: 536 MAFESPEAQQLNKDIFETIYYHALKTSSEIAAKEGPYETYHNSPVSKGILQPDMWNVIPS 595
+AFES A+ LN+DIFE +YY A++ S E+A KEGP+ +Y SP+SKGI ++ S
Sbjct: 509 LAFESDGARSLNQDIFEAMYYSAMEASCELAEKEGPFPSYEGSPISKGIFHFELAGRKAS 568
Query: 596 DRWDWGVLRDMISKNGVRNSLLVAPMPTASTSQILGNNECFEPYTSNIYSRRVLSGEFVV 655
WDW LR+ I ++GVRNSLL+A MPTA TSQI GNNE FEP+ SNIY+RR +GEF +
Sbjct: 569 GNWDWEGLRERIRRHGVRNSLLIALMPTAGTSQIFGNNEAFEPHASNIYTRRTHAGEFQI 628
Query: 656 VNKHLLHDLTEMGIWSPTIKNKIIYDDGSVQKIPEIPEELKMIYKTVWEIKQMTLVDMAV 715
VN+HL++DL +G+WS +KN +I ++GS+Q I IP E++ IYKT WEIK +++D+A
Sbjct: 629 VNQHLVNDLVRLGLWSYEMKNLVIENEGSIQNITSIPHEIREIYKTAWEIKMKSVIDLAA 688
Query: 716 DRGCYIDQSQSLNIHMDQPNFKKVTSLHFRTWSRGLKTGMYYLRSRAAADAIKFTVDTSV 775
DR ++DQSQSLNI + +P + ++TS+HF + GLKTGMYYLR+R AIKFTVD +
Sbjct: 689 DRQVFVDQSQSLNIFIAKPTYSQLTSMHFYGYHCGLKTGMYYLRTRPITSAIKFTVDKKL 748
Query: 776 FKEKPEKPELVVDDETKM 793
EK DD M
Sbjct: 749 -AEKTLSSMNDTDDPCSM 765
>UNIPROTKB|F5H861 [details] [associations]
symbol:RRM1 "Ribonucleoside-diphosphate reductase large
subunit" species:9606 "Homo sapiens" [GO:0005971
"ribonucleoside-diphosphate reductase complex" evidence=IEA]
[GO:0006260 "DNA replication" evidence=IEA] [GO:0004748
"ribonucleoside-diphosphate reductase activity, thioredoxin
disulfide as acceptor" evidence=IEA] [GO:0009263
"deoxyribonucleotide biosynthetic process" evidence=IEA]
[GO:0017076 "purine nucleotide binding" evidence=IEA] [GO:0051290
"protein heterotetramerization" evidence=IEA] InterPro:IPR000788
InterPro:IPR013346 Pfam:PF02867 PRINTS:PR01183 PROSITE:PS00089
GO:GO:0006260 GO:GO:0051290 GO:GO:0017076 GO:GO:0009263
GO:GO:0005971 GO:GO:0004748 TIGRFAMs:TIGR02506 HGNC:HGNC:10451
ChiTaRS:RRM1 EMBL:AC015689 IPI:IPI01016072
ProteinModelPortal:F5H861 SMR:F5H861 Ensembl:ENST00000537197
ArrayExpress:F5H861 Bgee:F5H861 Uniprot:F5H861
Length = 454
Score = 1151 (410.2 bits), Expect = 2.0e-162, Sum P(2) = 2.0e-162
Identities = 219/371 (59%), Positives = 276/371 (74%)
Query: 441 TAVCNLASIALPRFVREKDVPVESHPSRIVGSRGSKNRFFDFEKLAEVTAIVTENLNKII 500
T C+ + + + +V V + S + + +DF+KLAEVT +V NLNKII
Sbjct: 84 TIKCSNLCTEIVEYTSKDEVAVCNLASLALNMYVTSEHTYDFKKLAEVTKVVVRNLNKII 143
Query: 501 DVNYYPVETARRSNLRHRPIGIGVQGLADTFILLGMAFESPEAQQLNKDIFETIYYHALK 560
D+NYYPV A SN RHRPIGIGVQGLAD FIL+ FES EAQ LNK IFETIYY AL+
Sbjct: 144 DINYYPVPEACLSNKRHRPIGIGVQGLADAFILMRYPFESAEAQLLNKQIFETIYYGALE 203
Query: 561 TSSEIAAKEGPYETYHNSPVSKGILQPDMWNVIPSDRWDWGVLRDMISKNGVRNSLLVAP 620
S ++A ++GPYETY SPVSKGILQ DMWNV P+D WDW VL++ I+K G+RNSLL+AP
Sbjct: 204 ASCDLAKEQGPYETYEGSPVSKGILQYDMWNVTPTDLWDWKVLKEKIAKYGIRNSLLIAP 263
Query: 621 MPTASTSQILGNNECFEPYTSNIYSRRVLSGEFVVVNKHLLHDLTEMGIWSPTIKNKIIY 680
MPTAST+QILGNNE EPYTSNIY+RRVLSGEF +VN HLL DLTE G+W +KN+II
Sbjct: 264 MPTASTAQILGNNESIEPYTSNIYTRRVLSGEFQIVNPHLLKDLTERGLWHEEMKNQIIA 323
Query: 681 DDGSVQKIPEIPEELKMIYKTVWEIKQMTLVDMAVDRGCYIDQSQSLNIHMDQPNFKKVT 740
+GS+Q IPEIP++LK +YKTVWEI Q T++ MA +RG +IDQSQSLNIH+ +PN+ K+T
Sbjct: 324 CNGSIQSIPEIPDDLKQLYKTVWEISQKTVLKMAAERGAFIDQSQSLNIHIAEPNYGKLT 383
Query: 741 SLHFRTWSRGLKTGMYYLRSRAAADAIKFTVDTSVFKEKPEKPELVVDDETKMAQVVCSL 800
S+HF W +GLKTGMYYLR+R AA+ I+FT++ K+K + + + E A +VCSL
Sbjct: 384 SMHFYGWKQGLKTGMYYLRTRPAANPIQFTLNKEKLKDKEKVSKEEEEKERNTAAMVCSL 443
Query: 801 TNREECMACGS 811
NR+EC+ CGS
Sbjct: 444 ENRDECLMCGS 454
Score = 452 (164.2 bits), Expect = 2.0e-162, Sum P(2) = 2.0e-162
Identities = 81/117 (69%), Positives = 96/117 (82%)
Query: 339 MERVQTNGQWSLFCPNEASGLADCWGAEFEKLYTHYEREGKAKKVVQAQNLWFEILTSQI 398
M+RV+TN WSL CPNE GL + WG EFEKLY YE++G+ +KVV+AQ LW+ I+ SQ
Sbjct: 1 MKRVETNQDWSLMCPNECPGLDEVWGEEFEKLYASYEKQGRVRKVVKAQQLWYAIIESQT 60
Query: 399 ETGTPYMLFKDTCNRKSNQQNLGTIKSSNLCTEIIEYTSPTETAVCNLASIALPRFV 455
ETGTPYML+KD+CNRKSNQQNLGTIK SNLCTEI+EYTS E AVCNLAS+AL +V
Sbjct: 61 ETGTPYMLYKDSCNRKSNQQNLGTIKCSNLCTEIVEYTSKDEVAVCNLASLALNMYV 117
>TIGR_CMR|CBU_1553 [details] [associations]
symbol:CBU_1553 "ribonucleoside-diphosphate reductase,
alpha subunit" species:227377 "Coxiella burnetii RSA 493"
[GO:0004748 "ribonucleoside-diphosphate reductase activity,
thioredoxin disulfide as acceptor" evidence=ISS] [GO:0009265
"2'-deoxyribonucleotide biosynthetic process" evidence=ISS]
InterPro:IPR000788 InterPro:IPR008926 InterPro:IPR013344
InterPro:IPR013346 InterPro:IPR013509 Pfam:PF00317 Pfam:PF02867
PRINTS:PR01183 PROSITE:PS00089 UniPathway:UPA00326 Pfam:PF03477
GO:GO:0005524 GO:GO:0006260 EMBL:AE016828 GenomeReviews:AE016828_GR
GO:GO:0031419 InterPro:IPR005144 PROSITE:PS51161 KO:K00525
GO:GO:0005971 GO:GO:0004748 SUPFAM:SSF48168 TIGRFAMs:TIGR02504
OMA:PQARNSN TIGRFAMs:TIGR02506 HOGENOM:HOG000057036
ProtClustDB:PRK07207 RefSeq:NP_820536.1 ProteinModelPortal:Q83BF6
PRIDE:Q83BF6 GeneID:1209463 KEGG:cbu:CBU_1553 PATRIC:17931867
BioCyc:CBUR227377:GJ7S-1534-MONOMER Uniprot:Q83BF6
Length = 941
Score = 1236 (440.2 bits), Expect = 1.0e-128, Sum P(2) = 1.0e-128
Identities = 293/771 (38%), Positives = 435/771 (56%)
Query: 32 EHCDPVLVSQKVCAGVYKGVTTSQLDELXXXXXXXXXXNHPDYASLAARIAVSNLHKNTK 91
E D V + ++ ++ GV + + N P+Y + AR+ + +L++
Sbjct: 171 EGVDAVKILEETKNNLFDGVALKDVYKGLVMTARTLVENEPNYTYVTARLLLHDLYREVL 230
Query: 92 KSFS--ETI--KDMYNHYNE--RSGLKAPLIADDIYEIIMK-NAACLDSEIIXXXXXXXX 144
+ + + +D+ ++Y E ++ ++ + + ++ + + L +
Sbjct: 231 NGLNLPQDLMHEDIAHYYPEAFKNFIRHGIETEHLHPNLQTFDLNYLAQALKPERDQQFT 290
Query: 145 XXXXKTLERSYLLKVQGKVVERPQHMLMRVSIGIHKDDIDS----AIKTYHMMSQRWFTH 200
+TL YL+ Q +E PQ MRV++G+ + + ++ A++ Y+++S F
Sbjct: 291 YLSLQTLYDRYLIHHQQVRIELPQVFFMRVAMGLAQSEGEARNQRAVEFYNVLSSFDFMS 350
Query: 201 ASPTLFNAGTPRPQLSSCFLVCMKDDSIEGIYETLKECAVISKSAGGIGVSVHNIRATGS 260
++PTLFN+GT PQLSSCFL + D S++GIY LK+ A++SK AGG+G +RA G+
Sbjct: 351 STPTLFNSGTVFPQLSSCFLTTVPD-SLDGIYGALKDNALLSKYAGGLGNDWTPVRAMGA 409
Query: 261 YIRGTNGTSNGIVPMLRVFNDTARYVDQGGGKRKGAFAVYLEPWHADIFEFLNLKKNHGK 320
YI+GTNG S G+VP L V + TA V+QGG KRKGA YLE WH DI EFL+L+KN G
Sbjct: 410 YIKGTNGKSLGVVPFLNVADATAIAVNQGG-KRKGAVCAYLETWHMDIEEFLDLRKNTGD 468
Query: 321 EEHRARDLFYALWVPDLFMERVQTNGQWSLFCPNEASGLADCWGAEFEKLYTHYERE--- 377
+ R D+ A W+PDLFM+RV +GQW+LF P+E L D +G FE Y YE +
Sbjct: 469 DRRRTHDMNTANWIPDLFMKRVFEDGQWTLFSPDEVPDLHDKFGEAFEIAYVAYEEKAHR 528
Query: 378 GKAK-KVVQAQNLWFEILTSQIETGTPYMLFKDTCNRKSNQQNLGTIKSSNLCTEIIEYT 436
G+ + K + A +LW +IL+ ETG P++ FKD CN +S QQ++G I SSNLCTEI T
Sbjct: 529 GEIRSKTISALSLWRKILSMLFETGHPWVTFKDACNIRSPQQHVGVIHSSNLCTEITLNT 588
Query: 437 SPTETAVCNLASIALPRFVREKDVPVESHPSRIVGSRGSKNRFFDFEKLAEVTAIVTENL 496
S E AVCNL SI L +++ G D EKLA T L
Sbjct: 589 SREEIAVCNLGSINLVNHMKD----------------GK----LDTEKLARTTKTAIRML 628
Query: 497 NKIIDVNYYPVETARRSNLRHRPIGIGVQGLADTFILLGMAFESPEAQQLNKDIFETIYY 556
+ +ID+NYY V AR SNL+HRPIG+G+ G D L + + S A Q ETI Y
Sbjct: 629 DNVIDINYYSVPQARTSNLKHRPIGLGLMGFQDALYLQNIPYASEAAVQFADQSMETISY 688
Query: 557 HALKTSSEIAAKEGPYETYHNSPVSKGILQPDMWNVIPSDRW-----------DWGVLRD 605
+A++ S E+A + GPYET++NS S+GIL D ++ R DW LR
Sbjct: 689 YAIQASMELAKERGPYETFNNSLWSQGILPIDSIQLLKKSRGKYFEQNTDQTLDWNALRK 748
Query: 606 MISKNGVRNSLLVAPMPTASTSQILGNNECFEPYTSNIYSRRVLSGEFVVVNKHLLHDLT 665
+ +G+RNS ++A PTA+ S I G ++ EP N++ + LSGEF V+N +L+ +L
Sbjct: 749 QVVAHGMRNSNVMAIAPTATISNICGISQSIEPTYQNLFVKSNLSGEFTVINPYLVRELK 808
Query: 666 EMGIWSPTIKNKIIYDDGSVQKIPEIPEELKMIYKTVWEIKQMTLVDMAVDRGCYIDQSQ 725
+W + + + Y +GSVQKI IP ELK +Y T +E++ LV+ A R +IDQ+Q
Sbjct: 809 SRQLWDNVMVHDLKYYNGSVQKIDRIPAELKKLYATAFEVEPRWLVEAASRRQKWIDQAQ 868
Query: 726 SLNIHMDQPNFKKVTSLHFRTWSRGLKTGMYYLRSRAAADAIKFTV-DTSV 775
SLN++M +P+ KK+ L+ W RGLKT YYLRS A K T+ DT++
Sbjct: 869 SLNLYMAEPSGKKLDVLYRMAWLRGLKT-TYYLRSMGATGTEKATIHDTTL 918
Score = 48 (22.0 bits), Expect = 1.0e-128, Sum P(2) = 1.0e-128
Identities = 11/22 (50%), Positives = 14/22 (63%)
Query: 3 VVKRDGRQEAVHFDKITARLKK 24
VVKRDGR ++IT +KK
Sbjct: 32 VVKRDGRVVKYDANRITIAMKK 53
>UNIPROTKB|Q886B0 [details] [associations]
symbol:nrdA "Ribonucleoside-diphosphate reductase"
species:223283 "Pseudomonas syringae pv. tomato str. DC3000"
[GO:0004748 "ribonucleoside-diphosphate reductase activity,
thioredoxin disulfide as acceptor" evidence=ISS] [GO:0009265
"2'-deoxyribonucleotide biosynthetic process" evidence=ISS]
InterPro:IPR000788 InterPro:IPR008926 InterPro:IPR013346
InterPro:IPR013509 Pfam:PF00317 Pfam:PF02867 PRINTS:PR01183
PROSITE:PS00089 UniPathway:UPA00326 Pfam:PF03477 GO:GO:0005524
GO:GO:0006260 EMBL:AE016853 GenomeReviews:AE016853_GR
InterPro:IPR005144 PROSITE:PS51161 GO:GO:0009265 eggNOG:COG0209
KO:K00525 GO:GO:0005971 GO:GO:0004748 SUPFAM:SSF48168 OMA:PQARNSN
TIGRFAMs:TIGR02506 HOGENOM:HOG000057036 ProtClustDB:PRK07207
RefSeq:NP_791496.1 ProteinModelPortal:Q886B0 GeneID:1183308
KEGG:pst:PSPTO_1671 PATRIC:19994588
BioCyc:PSYR223283:GJIX-1701-MONOMER Uniprot:Q886B0
Length = 970
Score = 1227 (437.0 bits), Expect = 1.3e-126, Sum P(2) = 1.3e-126
Identities = 299/798 (37%), Positives = 428/798 (53%)
Query: 7 DGRQEAVHFDKITARLKKLSYGLSTEHCDPVLVSQKVCAGVYKGVTTSQLDELXXXXXXX 66
DG + ++ + + GL+ D L+ + +Y GV ++
Sbjct: 153 DGSFAPLDMGRLNTIVTEACEGLAEVDAD--LIQTETLKNLYDGVALKDVNTALVMTART 210
Query: 67 XXXNHPDYASLAARIAVSNLHKNTKKSFSETIKDMYNHYNERSGLKA---PL-IADDI-Y 121
P+Y+ + AR+ + L + D H+ E + L A P +A I +
Sbjct: 211 LVEREPNYSFVTARLLMDTLRAEGLGFLG--VADSATHH-EMADLYAKALPAYVATGIKF 267
Query: 122 EIIMKNAACLDSE-----IIXXXXXXXXXXXXKTLERSYLLKVQGKVVERPQHMLMRVSI 176
E++ A D E I +TL Y + G E PQ MRV++
Sbjct: 268 ELLNPVLAEFDLEKLGKAINHERDQQFTYLGLQTLYDRYFIHKDGVRFELPQIFFMRVAM 327
Query: 177 GI---HKDDIDSAIKTYHMMSQRWFTHASPTLFNAGTPRPQLSSCFLVCMKDDSIEGIYE 233
G+ K D AI+ Y+++S + ++PTLFNAGT RPQLSSC+L + DD + GIY
Sbjct: 328 GLAIEEKAREDRAIEFYNLLSSFDYMSSTPTLFNAGTLRPQLSSCYLTTVPDD-LSGIYH 386
Query: 234 TLKECAVISKSAGGIGVSVHNIRATGSYIRGTNGTSNGIVPMLRVFNDTARYVDQGGGKR 293
+ + A++SK AGG+G +RA GSYI+GTNG S G+VP L+V NDTA V+QGG KR
Sbjct: 387 AIHDNAMLSKFAGGLGNDWTPVRALGSYIKGTNGKSQGVVPFLKVVNDTAVAVNQGG-KR 445
Query: 294 KGAFAVYLEPWHADIFEFLNLKKNHGKEEHRARDLFYALWVPDLFMERVQTNGQWSLFCP 353
KGA YLE WH DI EF+ L+KN G + R D+ A W+PDLFM+RV +G W+LF P
Sbjct: 446 KGAVCAYLETWHMDIEEFIELRKNTGDDRRRTHDMNTANWIPDLFMKRVFDDGPWTLFSP 505
Query: 354 NEASGLADCWGAEFEKLYTHYER----EGKAK--KVVQAQNLWFEILTSQIETGTPYMLF 407
+E L D G F++ Y +YE GK K K +QA++LW ++L+ ETG P++ F
Sbjct: 506 SEVPDLHDLTGKAFQERYEYYEALTEYPGKVKLFKTIQAKDLWRKMLSMLFETGHPWLTF 565
Query: 408 KDTCNRKSNQQNLGTIKSSNLCTEIIEYTSPTETAVCNLASIALPRFVREKDVPVESHPS 467
KD CN +S QQ++G + SSNLCTEI T+ E AVCNL SI LP +H
Sbjct: 566 KDPCNLRSPQQHVGVVHSSNLCTEITLNTNKDEIAVCNLGSINLP-----------NH-- 612
Query: 468 RIVGSRGSKNRFFDFEKLAEVTAIVTENLNKIIDVNYYPVETARRSNLRHRPIGIGVQGL 527
IV + D +KL + L+ +ID+NYY V AR SNLRHRP+G+G+ G
Sbjct: 613 -IVNGK------LDTDKLKRTIDVAVRMLDNVIDINYYSVPQARNSNLRHRPVGLGIMGF 665
Query: 528 ADTFILLGMAFESPEAQQLNKDIFETIYYHALKTSSEIAAKEGPYETYHNSPVSKGILQP 587
D L + + S A Q E + Y+A++ S ++A + G YET+ S S+GIL
Sbjct: 666 QDALYLQHIPYGSDAAVQFADSSMEAVSYYAIQASCDLADERGAYETFQGSLWSQGILPL 725
Query: 588 DMWNVIPSDRW------------DWGVLRDMISKNGVRNSLLVAPMPTASTSQILGNNEC 635
D ++ R DW +R + K G+RNS ++A PTA+ + I G ++
Sbjct: 726 DSQQILIEQRGQKYIDVDLKESLDWAPVRARVQK-GIRNSNIMAIAPTATIANITGVSQS 784
Query: 636 FEPYTSNIYSRRVLSGEFVVVNKHLLHDLTEMGIWSPTIKNKIIYDDGSVQKIPEIPEEL 695
EP N+Y + LSGEF V+N +L+ DL +W + N + Y DGSVQ+I IP+EL
Sbjct: 785 IEPTYQNLYVKSNLSGEFTVINPYLVRDLKARDLWDSVMINDLKYYDGSVQQIERIPQEL 844
Query: 696 KMIYKTVWEIKQMTLVDMAVDRGCYIDQSQSLNIHMDQPNFKKVTSLHFRTWSRGLKTGM 755
K +Y T +E+ +VD A R +IDQ+QSLN+++ + KK+ + W RGLKT
Sbjct: 845 KELYATAFEVDTKWIVDAASRRQKWIDQAQSLNLYIAGASGKKLDVTYRMAWYRGLKT-T 903
Query: 756 YYLRSRAAADAIKFTVDT 773
YYLR+ AA K TV+T
Sbjct: 904 YYLRALAATSTEKSTVNT 921
Score = 37 (18.1 bits), Expect = 1.3e-126, Sum P(2) = 1.3e-126
Identities = 9/22 (40%), Positives = 12/22 (54%)
Query: 3 VVKRDGRQEAVHFDKITARLKK 24
V+KR+G DKIT + K
Sbjct: 34 VIKRNGTVVPYTDDKITVAITK 55
>UNIPROTKB|Q48FF6 [details] [associations]
symbol:nrdA "Ribonucleoside-diphosphate reductase"
species:264730 "Pseudomonas syringae pv. phaseolicola 1448A"
[GO:0004748 "ribonucleoside-diphosphate reductase activity,
thioredoxin disulfide as acceptor" evidence=ISS] [GO:0009265
"2'-deoxyribonucleotide biosynthetic process" evidence=ISS]
InterPro:IPR000788 InterPro:IPR008926 InterPro:IPR013346
InterPro:IPR013509 Pfam:PF00317 Pfam:PF02867 PRINTS:PR01183
PROSITE:PS00089 UniPathway:UPA00326 Pfam:PF03477 GO:GO:0005524
GO:GO:0006260 EMBL:CP000058 GenomeReviews:CP000058_GR
InterPro:IPR005144 PROSITE:PS51161 GO:GO:0009265 eggNOG:COG0209
KO:K00525 GO:GO:0005971 GO:GO:0004748 SUPFAM:SSF48168 OMA:PQARNSN
TIGRFAMs:TIGR02506 RefSeq:YP_275880.1 STRING:Q48FF6 GeneID:3557025
KEGG:psp:PSPPH_3738 PATRIC:19976913 HOGENOM:HOG000057036
ProtClustDB:PRK07207 Uniprot:Q48FF6
Length = 970
Score = 1226 (436.6 bits), Expect = 1.7e-126, Sum P(2) = 1.7e-126
Identities = 296/775 (38%), Positives = 419/775 (54%)
Query: 30 STEHCDPVLVSQKVCAGVYKGVTTSQLDELXXXXXXXXXXNHPDYASLAARIAVSNLHKN 89
S D L+ + +Y GV ++ P+Y+ + AR+ + L
Sbjct: 174 SLAEVDANLIQTETLKNLYDGVALKDVNTALVMTARTLVEREPNYSFVTARLLMDTLRAE 233
Query: 90 TKKSFSETIKDMYNHYNERSGLKA---PL-IADDI-YEIIMKNAACLDSE-----IIXXX 139
+ D H+ E + L A P +A I +E++ A D E I
Sbjct: 234 GLGFLG--VADSATHH-EMADLYAKALPAYVATGIKFELLNPVLAEFDLEKLGKAINHER 290
Query: 140 XXXXXXXXXKTLERSYLLKVQGKVVERPQHMLMRVSIGI---HKDDIDSAIKTYHMMSQR 196
+TL Y + G E PQ MRV++G+ K D AI+ Y+++S
Sbjct: 291 DQQFTYLGLQTLYDRYFIHKDGVRFELPQIFFMRVAMGLAIEEKAREDRAIEFYNLLSSF 350
Query: 197 WFTHASPTLFNAGTPRPQLSSCFLVCMKDDSIEGIYETLKECAVISKSAGGIGVSVHNIR 256
+ ++PTLFNAGT RPQLSSC+L + DD + GIY + + A++SK AGG+G +R
Sbjct: 351 DYMSSTPTLFNAGTLRPQLSSCYLTTVPDD-LSGIYHAIHDNAMLSKFAGGLGNDWTPVR 409
Query: 257 ATGSYIRGTNGTSNGIVPMLRVFNDTARYVDQGGGKRKGAFAVYLEPWHADIFEFLNLKK 316
A GSYI+GTNG S G+VP L+V NDTA V+QGG KRKGA YLE WH DI EF+ L+K
Sbjct: 410 ALGSYIKGTNGKSQGVVPFLKVVNDTAVAVNQGG-KRKGAVCAYLETWHMDIEEFIELRK 468
Query: 317 NHGKEEHRARDLFYALWVPDLFMERVQTNGQWSLFCPNEASGLADCWGAEFEKLYTHYER 376
N G + R D+ A W+PDLFM+RV +G W+LF P+E L D G F++ Y +YE
Sbjct: 469 NTGDDRRRTHDMNTANWIPDLFMKRVFDDGPWTLFSPSEVPDLHDLTGKAFQERYEYYEA 528
Query: 377 ----EGKAK--KVVQAQNLWFEILTSQIETGTPYMLFKDTCNRKSNQQNLGTIKSSNLCT 430
GK K K +QA++LW ++L+ ETG P++ FKD CN +S QQ++G + SSNLCT
Sbjct: 529 LTEYPGKVKLFKTIQAKDLWRKMLSMLFETGHPWLTFKDPCNLRSPQQHVGVVHSSNLCT 588
Query: 431 EIIEYTSPTETAVCNLASIALPRFVREKDVPVESHPSRIVGSRGSKNRFFDFEKLAEVTA 490
EI T+ E AVCNL SI LP +H IV + D +KL
Sbjct: 589 EITLNTNKDEIAVCNLGSINLP-----------NH---IVNGK------LDTDKLKRTVD 628
Query: 491 IVTENLNKIIDVNYYPVETARRSNLRHRPIGIGVQGLADTFILLGMAFESPEAQQLNKDI 550
+ L+ +ID+NYY V A+ SNLRHRP+G+G+ G D L + + S A Q
Sbjct: 629 VAVRMLDNVIDINYYSVPQAKNSNLRHRPVGLGIMGFQDALYLQHIPYGSDAAVQFADTS 688
Query: 551 FETIYYHALKTSSEIAAKEGPYETYHNSPVSKGILQPDMWNVIPSDRW------------ 598
E + Y+A++ S ++A + G YET+ S SKGIL D ++ R
Sbjct: 689 MEAVSYYAIQASCDLADERGAYETFQGSLWSKGILPLDSQQILIEQRGEKYIDVDLKETL 748
Query: 599 DWGVLRDMISKNGVRNSLLVAPMPTASTSQILGNNECFEPYTSNIYSRRVLSGEFVVVNK 658
DW +R + K G+RNS ++A PTA+ + I G ++ EP N+Y + LSGEF V+N
Sbjct: 749 DWAPVRARVQK-GIRNSNIMAIAPTATIANITGVSQSIEPTYQNLYVKSNLSGEFTVINP 807
Query: 659 HLLHDLTEMGIWSPTIKNKIIYDDGSVQKIPEIPEELKMIYKTVWEIKQMTLVDMAVDRG 718
+L+ DL +W + N + Y DGSVQ+I IP+ELK +Y T +E+ +VD A R
Sbjct: 808 YLVRDLKARDLWDSVMINDLKYYDGSVQQIERIPQELKELYATAFEVDTKWIVDAASRRQ 867
Query: 719 CYIDQSQSLNIHMDQPNFKKVTSLHFRTWSRGLKTGMYYLRSRAAADAIKFTVDT 773
+IDQ+QSLN+++ + KK+ + W RGLKT YYLR+ AA K TV+T
Sbjct: 868 KWIDQAQSLNLYIAGASGKKLDVTYRMAWYRGLKT-TYYLRALAATSTEKSTVNT 921
Score = 37 (18.1 bits), Expect = 1.7e-126, Sum P(2) = 1.7e-126
Identities = 9/22 (40%), Positives = 12/22 (54%)
Query: 3 VVKRDGRQEAVHFDKITARLKK 24
V+KR+G DKIT + K
Sbjct: 34 VIKRNGTVVPYTDDKITVAITK 55
>UNIPROTKB|Q607W9 [details] [associations]
symbol:nrdA "Ribonucleoside-diphosphate reductase"
species:243233 "Methylococcus capsulatus str. Bath" [GO:0004748
"ribonucleoside-diphosphate reductase activity, thioredoxin
disulfide as acceptor" evidence=ISS] [GO:0009265
"2'-deoxyribonucleotide biosynthetic process" evidence=ISS]
InterPro:IPR000788 InterPro:IPR008926 InterPro:IPR013346
InterPro:IPR013509 Pfam:PF00317 Pfam:PF02867 PRINTS:PR01183
PROSITE:PS00089 UniPathway:UPA00326 Pfam:PF03477 GO:GO:0005524
GO:GO:0006260 EMBL:AE017282 GenomeReviews:AE017282_GR
InterPro:IPR005144 PROSITE:PS51161 GO:GO:0009265 KO:K00525
GO:GO:0005971 GO:GO:0004748 SUPFAM:SSF48168 OMA:PQARNSN
TIGRFAMs:TIGR02506 HOGENOM:HOG000057036 ProtClustDB:PRK07207
RefSeq:YP_114078.1 ProteinModelPortal:Q607W9 GeneID:3104511
KEGG:mca:MCA1634 PATRIC:22607102 Uniprot:Q607W9
Length = 969
Score = 1206 (429.6 bits), Expect = 1.2e-122, P = 1.2e-122
Identities = 300/848 (35%), Positives = 445/848 (52%)
Query: 3 VVKRDGRQEAVHFDKITARLKKLSYGLSTEHCDPVLVSQKVCAGVYKGVTTSQLDELXXX 62
V DG ++ + ++ +++ GLS +P + ++ ++ GV ++
Sbjct: 149 VTLEDGTRKPLDTARLRHVVEEACRGLSD--VEPAWIIEETRRNLFDGVPEKEVAPTLVM 206
Query: 63 XXXXXXXNHPDYASLAARIAVSNLHKNTKK-----SFSETIKDMYNHYNE------RSGL 111
+Y+ +AAR+ + L + + S T +M Y E + G+
Sbjct: 207 TARTRIEQESNYSYVAARLLLDALRREALSFLGHGAVSATQDEMSERYGEYFKDYVKRGV 266
Query: 112 KAPLIADDIYEIIMKNAACLDSEIIXXXXXXXXXXXXKTLERSYLLKVQGKV-VERPQHM 170
+ L++ ++ ++ L + +TL Y + G + E PQ
Sbjct: 267 ELELLSPELARFDLQR---LGEALKPERDLQFNYLGLQTLYDRYFIH-SGDIRFELPQAF 322
Query: 171 LMRVSIGIHKDDIDS---AIKTYHMMSQRWFTHASPTLFNAGTPRPQLSSCFLVCMKDDS 227
MRV++G+ ++D AI+ Y ++S F ++PTLFNAGT RPQLSSC+L + DD
Sbjct: 323 FMRVAMGLAIQEVDREERAIEFYDLLSSFDFMSSTPTLFNAGTLRPQLSSCYLTTVPDD- 381
Query: 228 IEGIYETLKECAVISKSAGGIGVSVHNIRATGSYIRGTNGTSNGIVPMLRVFNDTARYVD 287
++GIY +K+ A++SK AGG+G +R G++I+GTNG S G+VP L+V NDTA V+
Sbjct: 382 LDGIYSAIKDNALLSKFAGGLGNDWTRVRGMGAHIKGTNGKSQGVVPFLKVANDTAVAVN 441
Query: 288 QGGGKRKGAFAVYLEPWHADIFEFLNLKKNHGKEEHRARDLFYALWVPDLFMERVQTNGQ 347
QGG KRKGA YLE WH DI EFL+L+KN G + R D+ A WVPDLFM+RV +
Sbjct: 442 QGG-KRKGAVCAYLETWHIDIEEFLDLRKNTGDDRRRTHDMNTANWVPDLFMKRVAEERE 500
Query: 348 WSLFCPNEASGLADCWGAEFEKLYTHYERE---GKAK--KVVQAQNLWFEILTSQIETGT 402
W+LF PN+ L D G FE+ Y YE + G+ K K + A LW ++L+ ETG
Sbjct: 501 WTLFSPNDTPDLHDLTGQSFERRYQEYEAKADRGEIKLYKRLPAVQLWRKMLSMLFETGH 560
Query: 403 PYMLFKDTCNRKSNQQNLGTIKSSNLCTEIIEYTSPTETAVCNLASIALPRFVREKDVPV 462
P++ FKD CN + Q+ G + SSNLCTEI +T+ E AVCNL S+ L +
Sbjct: 561 PWLAFKDPCNLRYTNQHAGVVHSSNLCTEITLHTNDNEIAVCNLGSVNLAAHIT------ 614
Query: 463 ESHPSRIVGSRGSKNRFFDFEKLAEVTAIVTENLNKIIDVNYYPVETARRSNLRHRPIGI 522
P G+ D EKL A L+ +ID+NYY V ARRSNLRHRP+G+
Sbjct: 615 ---PD------GA----LDTEKLQRTIATGMRMLDNVIDINYYSVPQARRSNLRHRPVGL 661
Query: 523 GVQGLADTFILLGMAFESPEAQQLNKDIFETIYYHALKTSSEIAAKEGPYETYHNSPVSK 582
G+ G D L + + S EA E + Y+A++ S ++AA+ G Y ++ S S+
Sbjct: 662 GIMGFQDALYKLRLPYASQEAVAFADLSMEAVSYYAIQASCDLAAERGRYSSFDGSLWSR 721
Query: 583 GILQPDMWNVIPSDRW-----------DWGVLRDMISKNGVRNSLLVAPMPTASTSQILG 631
GIL D ++ R DW LR+ + G+RNS +A PTA+ S I G
Sbjct: 722 GILPIDSIALLEEGRGGYLQMDRSQTLDWNALRERVRTVGMRNSNTMAIAPTATISNICG 781
Query: 632 NNECFEPYTSNIYSRRVLSGEFVVVNKHLLHDLTEMGIWSPTIKNKIIYDDGSVQKIPEI 691
++ EP N++ + LSGEF VVN +L+ DL +G+W + N + Y DGSVQKI I
Sbjct: 782 VSQSIEPTYQNLFVKSNLSGEFTVVNPYLVRDLKTLGLWDAVMINDLKYYDGSVQKIERI 841
Query: 692 PEELKMIYKTVWEIKQMTLVDMAVDRGCYIDQSQSLNIHMDQPNFKKVTSLHFRTWSRGL 751
PE LK +Y T +EI L++ R ++DQ+QSLN+++ +P+ KK+ +L+ W RGL
Sbjct: 842 PETLKQLYATAFEIDARWLIEAGSRRQKWLDQAQSLNLYLAEPSGKKLDTLYKLAWVRGL 901
Query: 752 KTGMYYLRSRAAADAIKFTV---DTSVFKEKPE-------KPELVVDDETKMAQVVCSLT 801
KT YYLRS A K T + K P +P V +T+ A+ L
Sbjct: 902 KT-TYYLRSLGATHVEKSTAFDGKLNAVKTDPIDDAIPGLRPLETVYADTRPAEPKACLI 960
Query: 802 NREECMAC 809
+ C AC
Sbjct: 961 DDPTCEAC 968
>UNIPROTKB|Q5HXD4 [details] [associations]
symbol:nrdA "Ribonucleoside-diphosphate reductase"
species:195099 "Campylobacter jejuni RM1221" [GO:0004748
"ribonucleoside-diphosphate reductase activity, thioredoxin
disulfide as acceptor" evidence=ISS] [GO:0009265
"2'-deoxyribonucleotide biosynthetic process" evidence=ISS]
InterPro:IPR000788 InterPro:IPR008926 InterPro:IPR013346
InterPro:IPR013509 Pfam:PF00317 Pfam:PF02867 PRINTS:PR01183
PROSITE:PS00089 UniPathway:UPA00326 Pfam:PF03477 GO:GO:0005524
GO:GO:0006260 EMBL:CP000025 GenomeReviews:CP000025_GR
InterPro:IPR005144 PROSITE:PS51161 GO:GO:0009265 eggNOG:COG0209
KO:K00525 GO:GO:0005971 GO:GO:0004748 SUPFAM:SSF48168
TIGRFAMs:TIGR02506 RefSeq:YP_178051.1 ProteinModelPortal:Q5HXD4
STRING:Q5HXD4 GeneID:3230679 KEGG:cjr:CJE0024 PATRIC:20041737
HOGENOM:HOG000057034 OMA:RAHDLFP ProtClustDB:PRK08447
BioCyc:CJEJ195099:GJC0-23-MONOMER Uniprot:Q5HXD4
Length = 789
Score = 674 (242.3 bits), Expect = 1.6e-93, Sum P(3) = 1.6e-93
Identities = 163/446 (36%), Positives = 247/446 (55%)
Query: 1 MYVVKRDGRQEAVHFDKITARLKKLSYGLSTEHCDPVLVSQKVCAGVYKGVTTSQLDE-L 59
M V+KR+GR E + KI L + + + K+ G++T ++ + L
Sbjct: 1 MKVIKRNGRTEELDVSKIKKCTSDAVKDLEGVNLSELELDAKI--QFRDGISTEEIQKTL 58
Query: 60 XXXXXXXXXXNHPDYASLAARIAVSNLHKNTKKSFSETIKDMYNHYNE--RSGLKAPLIA 117
+ P++ +AAR+ + +L+K + YNH E G K I
Sbjct: 59 IKTAVDKIDIDCPNWTFVAARLFLFDLYKKVNGM------NRYNHLREYFEKGEKEGRIL 112
Query: 118 DDIYEIIMKNAACLDSEIIXXXXXXXXXXXXKTLERSYLLK-VQGKVVERPQHMLMRVSI 176
+ E + L++ I KTL YL+K +G +E PQ M M +++
Sbjct: 113 LGLKE--KYDLDDLNAYIKPERDMQFTYLGIKTLYDRYLIKDSKGMPIELPQQMFMAIAM 170
Query: 177 GIHKDDIDS---AIKTYHMMSQRWFTHASPTLFNAGTPRPQLSSCFLVCMKDDSIEGIYE 233
+ +++ + A K Y ++S+ A+PTL NA T R QLSSC+ + D+IEGI++
Sbjct: 171 FLAQNEFNPQEWAKKFYDLISKFELMLATPTLSNARTTRHQLSSCY-IGSTPDNIEGIFD 229
Query: 234 TLKECAVISKSAGGIGVSVHNIRATGSYIRGTNGTSNGIVPMLRVFNDTARYVDQGGGKR 293
+ +E A++SK GGIG +RA G I G + GI+P L++ ND A VDQ G R
Sbjct: 230 SYQEMALLSKFGGGIGWDWSKVRAMGGSIDGHKNAAGGIIPFLKITNDIAVAVDQLG-TR 288
Query: 294 KGAFAVYLEPWHADIFEFLNLKKNHGKEEHRARDLFYALWVPDLFMERVQTNGQWSLFCP 353
KGA AVY+EPWH DI +F++L+KN G+E RA +LF ALW+ DLFM+RV+ N +W+LF P
Sbjct: 289 KGAIAVYIEPWHMDISDFIDLRKNSGEERRRAHELFPALWINDLFMKRVRANDKWTLFDP 348
Query: 354 NEASGLADCWGAEFEKLYTHYER-EGKAKKVVQAQNLWFEILTSQIETGTPYMLFKDTCN 412
+ + L D +G FEK Y YE+ E K++V+A+ LW +IL + ETG P++ FKD+ N
Sbjct: 349 ADTADLCDLYGEAFEKRYEEYEKDESITKEIVEAKELWKKILLNYFETGLPFLCFKDSAN 408
Query: 413 RKSNQQNLGTIKSSNLCTEIIEYTSP 438
R + ++G I+SSNLCTEI + T P
Sbjct: 409 RANPNAHVGIIRSSNLCTEIFQNTEP 434
Score = 227 (85.0 bits), Expect = 1.6e-93, Sum P(3) = 1.6e-93
Identities = 65/223 (29%), Positives = 107/223 (47%)
Query: 477 NRFFDFEKLAEVTAIVTENLNKIIDVNYYPVETARRSNLRHRPIGIGVQGLADTFILLGM 536
++ + E + V L+ +ID+N+YP + +NL+ R IG+GV G A +
Sbjct: 504 SKVYTKEDIERVVPTAIRMLDNVIDLNFYPHRKVKDTNLKSRAIGLGVMGEAQMLAEAKI 563
Query: 537 AFESPEAQQLNK--DIFETIYYHALKTSSEIAAKEGPYETYHNSPVSKGILQPDMWN--- 591
+ S E LNK +I E I + A+ SS +A ++G YE + S SKGI D+ +
Sbjct: 564 YWGSDE--HLNKIDEIMEQISFEAINASSNLALEKGSYEDFEGSNWSKGIFPIDVASPKA 621
Query: 592 --------VIPSDRWDWGVLRDMISKNGVRNSLLVAPMPTASTSQILGNNECFEPYTSNI 643
+ DW LR+ + K+G+RN L+A PT+S S ++G + EP
Sbjct: 622 KALTLREGLFDQSECDWVKLREKVKKDGMRNGYLMAIAPTSSISILVGTTQTIEPVYKRK 681
Query: 644 YSRRVLSGEFVVVNKHLLHDLTEMGIWSPTIKNKIIYDDGSVQ 686
+ + LSG VV +L D + + + KI+ +V+
Sbjct: 682 WFEQNLSGMIPVVVPNLSLDTWQYYTPAYELDQKILVKAAAVR 724
Score = 111 (44.1 bits), Expect = 2.5e-81, Sum P(3) = 2.5e-81
Identities = 31/91 (34%), Positives = 48/91 (52%)
Query: 688 IPEIPEELKMIYKTVWEIKQMTLVDMAVDRGCYIDQSQSLNIHM--DQPNFKKVTSLHFR 745
+P + + Y +E+ Q LV A RG +IDQ QSLNI + D+ + + ++
Sbjct: 695 VPNLSLDTWQYYTPAYELDQKILVKAAAVRGKWIDQGQSLNIFLSLDKASGGYLNEIYQL 754
Query: 746 TWSRGLKTGMYYLRSRAAADAIKFTV-DTSV 775
W G+K+ YYLRS + D+ K V D S+
Sbjct: 755 AWELGVKS-TYYLRSESP-DSEKVNVADRSI 783
Score = 63 (27.2 bits), Expect = 1.6e-93, Sum P(3) = 1.6e-93
Identities = 14/30 (46%), Positives = 21/30 (70%)
Query: 432 IIE-YTSPTETAVCNLASIALPRFVREKDV 460
I+E Y + +TAVCNLASI L + ++D+
Sbjct: 483 IVEKYKNDGKTAVCNLASINLSKVYTKEDI 512
>TIGR_CMR|CJE_0024 [details] [associations]
symbol:CJE_0024 "ribonucleoside-diphosphate reductase,
alpha subunit" species:195099 "Campylobacter jejuni RM1221"
[GO:0004748 "ribonucleoside-diphosphate reductase activity,
thioredoxin disulfide as acceptor" evidence=ISS] [GO:0009265
"2'-deoxyribonucleotide biosynthetic process" evidence=ISS]
InterPro:IPR000788 InterPro:IPR008926 InterPro:IPR013346
InterPro:IPR013509 Pfam:PF00317 Pfam:PF02867 PRINTS:PR01183
PROSITE:PS00089 UniPathway:UPA00326 Pfam:PF03477 GO:GO:0005524
GO:GO:0006260 EMBL:CP000025 GenomeReviews:CP000025_GR
InterPro:IPR005144 PROSITE:PS51161 GO:GO:0009265 eggNOG:COG0209
KO:K00525 GO:GO:0005971 GO:GO:0004748 SUPFAM:SSF48168
TIGRFAMs:TIGR02506 RefSeq:YP_178051.1 ProteinModelPortal:Q5HXD4
STRING:Q5HXD4 GeneID:3230679 KEGG:cjr:CJE0024 PATRIC:20041737
HOGENOM:HOG000057034 OMA:RAHDLFP ProtClustDB:PRK08447
BioCyc:CJEJ195099:GJC0-23-MONOMER Uniprot:Q5HXD4
Length = 789
Score = 674 (242.3 bits), Expect = 1.6e-93, Sum P(3) = 1.6e-93
Identities = 163/446 (36%), Positives = 247/446 (55%)
Query: 1 MYVVKRDGRQEAVHFDKITARLKKLSYGLSTEHCDPVLVSQKVCAGVYKGVTTSQLDE-L 59
M V+KR+GR E + KI L + + + K+ G++T ++ + L
Sbjct: 1 MKVIKRNGRTEELDVSKIKKCTSDAVKDLEGVNLSELELDAKI--QFRDGISTEEIQKTL 58
Query: 60 XXXXXXXXXXNHPDYASLAARIAVSNLHKNTKKSFSETIKDMYNHYNE--RSGLKAPLIA 117
+ P++ +AAR+ + +L+K + YNH E G K I
Sbjct: 59 IKTAVDKIDIDCPNWTFVAARLFLFDLYKKVNGM------NRYNHLREYFEKGEKEGRIL 112
Query: 118 DDIYEIIMKNAACLDSEIIXXXXXXXXXXXXKTLERSYLLK-VQGKVVERPQHMLMRVSI 176
+ E + L++ I KTL YL+K +G +E PQ M M +++
Sbjct: 113 LGLKE--KYDLDDLNAYIKPERDMQFTYLGIKTLYDRYLIKDSKGMPIELPQQMFMAIAM 170
Query: 177 GIHKDDIDS---AIKTYHMMSQRWFTHASPTLFNAGTPRPQLSSCFLVCMKDDSIEGIYE 233
+ +++ + A K Y ++S+ A+PTL NA T R QLSSC+ + D+IEGI++
Sbjct: 171 FLAQNEFNPQEWAKKFYDLISKFELMLATPTLSNARTTRHQLSSCY-IGSTPDNIEGIFD 229
Query: 234 TLKECAVISKSAGGIGVSVHNIRATGSYIRGTNGTSNGIVPMLRVFNDTARYVDQGGGKR 293
+ +E A++SK GGIG +RA G I G + GI+P L++ ND A VDQ G R
Sbjct: 230 SYQEMALLSKFGGGIGWDWSKVRAMGGSIDGHKNAAGGIIPFLKITNDIAVAVDQLG-TR 288
Query: 294 KGAFAVYLEPWHADIFEFLNLKKNHGKEEHRARDLFYALWVPDLFMERVQTNGQWSLFCP 353
KGA AVY+EPWH DI +F++L+KN G+E RA +LF ALW+ DLFM+RV+ N +W+LF P
Sbjct: 289 KGAIAVYIEPWHMDISDFIDLRKNSGEERRRAHELFPALWINDLFMKRVRANDKWTLFDP 348
Query: 354 NEASGLADCWGAEFEKLYTHYER-EGKAKKVVQAQNLWFEILTSQIETGTPYMLFKDTCN 412
+ + L D +G FEK Y YE+ E K++V+A+ LW +IL + ETG P++ FKD+ N
Sbjct: 349 ADTADLCDLYGEAFEKRYEEYEKDESITKEIVEAKELWKKILLNYFETGLPFLCFKDSAN 408
Query: 413 RKSNQQNLGTIKSSNLCTEIIEYTSP 438
R + ++G I+SSNLCTEI + T P
Sbjct: 409 RANPNAHVGIIRSSNLCTEIFQNTEP 434
Score = 227 (85.0 bits), Expect = 1.6e-93, Sum P(3) = 1.6e-93
Identities = 65/223 (29%), Positives = 107/223 (47%)
Query: 477 NRFFDFEKLAEVTAIVTENLNKIIDVNYYPVETARRSNLRHRPIGIGVQGLADTFILLGM 536
++ + E + V L+ +ID+N+YP + +NL+ R IG+GV G A +
Sbjct: 504 SKVYTKEDIERVVPTAIRMLDNVIDLNFYPHRKVKDTNLKSRAIGLGVMGEAQMLAEAKI 563
Query: 537 AFESPEAQQLNK--DIFETIYYHALKTSSEIAAKEGPYETYHNSPVSKGILQPDMWN--- 591
+ S E LNK +I E I + A+ SS +A ++G YE + S SKGI D+ +
Sbjct: 564 YWGSDE--HLNKIDEIMEQISFEAINASSNLALEKGSYEDFEGSNWSKGIFPIDVASPKA 621
Query: 592 --------VIPSDRWDWGVLRDMISKNGVRNSLLVAPMPTASTSQILGNNECFEPYTSNI 643
+ DW LR+ + K+G+RN L+A PT+S S ++G + EP
Sbjct: 622 KALTLREGLFDQSECDWVKLREKVKKDGMRNGYLMAIAPTSSISILVGTTQTIEPVYKRK 681
Query: 644 YSRRVLSGEFVVVNKHLLHDLTEMGIWSPTIKNKIIYDDGSVQ 686
+ + LSG VV +L D + + + KI+ +V+
Sbjct: 682 WFEQNLSGMIPVVVPNLSLDTWQYYTPAYELDQKILVKAAAVR 724
Score = 111 (44.1 bits), Expect = 2.5e-81, Sum P(3) = 2.5e-81
Identities = 31/91 (34%), Positives = 48/91 (52%)
Query: 688 IPEIPEELKMIYKTVWEIKQMTLVDMAVDRGCYIDQSQSLNIHM--DQPNFKKVTSLHFR 745
+P + + Y +E+ Q LV A RG +IDQ QSLNI + D+ + + ++
Sbjct: 695 VPNLSLDTWQYYTPAYELDQKILVKAAAVRGKWIDQGQSLNIFLSLDKASGGYLNEIYQL 754
Query: 746 TWSRGLKTGMYYLRSRAAADAIKFTV-DTSV 775
W G+K+ YYLRS + D+ K V D S+
Sbjct: 755 AWELGVKS-TYYLRSESP-DSEKVNVADRSI 783
Score = 63 (27.2 bits), Expect = 1.6e-93, Sum P(3) = 1.6e-93
Identities = 14/30 (46%), Positives = 21/30 (70%)
Query: 432 IIE-YTSPTETAVCNLASIALPRFVREKDV 460
I+E Y + +TAVCNLASI L + ++D+
Sbjct: 483 IVEKYKNDGKTAVCNLASINLSKVYTKEDI 512
>UNIPROTKB|Q71XL1 [details] [associations]
symbol:nrdA "Ribonucleoside-diphosphate reductase"
species:265669 "Listeria monocytogenes serotype 4b str. F2365"
[GO:0004748 "ribonucleoside-diphosphate reductase activity,
thioredoxin disulfide as acceptor" evidence=ISS] [GO:0005971
"ribonucleoside-diphosphate reductase complex" evidence=ISS]
[GO:0009265 "2'-deoxyribonucleotide biosynthetic process"
evidence=ISS] InterPro:IPR000788 InterPro:IPR008926
InterPro:IPR013346 InterPro:IPR013509 Pfam:PF00317 Pfam:PF02867
PRINTS:PR01183 PROSITE:PS00089 UniPathway:UPA00326 GO:GO:0005524
GO:GO:0006260 EMBL:AE017262 GenomeReviews:AE017262_GR
InterPro:IPR005144 PROSITE:PS51161 GO:GO:0009265 eggNOG:COG0209
KO:K00525 GO:GO:0005971 GO:GO:0004748 SUPFAM:SSF48168
TIGRFAMs:TIGR02506 HOGENOM:HOG000057034 RefSeq:YP_014777.1
ProteinModelPortal:Q71XL1 STRING:Q71XL1 GeneID:2798407
KEGG:lmf:LMOf2365_2187 PATRIC:20325695 OMA:RTHDLFT
ProtClustDB:PRK09209 Uniprot:Q71XL1
Length = 763
Score = 707 (253.9 bits), Expect = 5.2e-77, Sum P(2) = 5.2e-77
Identities = 215/673 (31%), Positives = 342/673 (50%)
Query: 2 YVVKRDGRQEAVHFDKITARLKKLSYGLSTEH--CDPVLVSQKVCAGVYK--GVTTSQL- 56
Y+VK DG + FDK +RL + E D +KV V K +L
Sbjct: 10 YIVK-DGGNRKLPFDK--SRLDGYLEKIHEEFPKLDLEDYKRKVFNFVEKKEDYAADELV 66
Query: 57 DELXXXXXXXXXXNHPDYASLAARIAVSNLHKNTKKSFSETIKDMYNHYNERSGLKAPLI 116
D L + P++ AAR+ ++ L+K K+ D Y Y GL+ L
Sbjct: 67 DYLIREAEARTDIHIPEWEHFAARLYLNKLYKKASKNRFYNDDDKYGSY---VGLQESLG 123
Query: 117 ADDIYE-IIMKNAACLDSEIIXXXXXXXXXXXXKTLERSYLLKV-------QGKVVERPQ 168
IY I+KN + D I T YLL + V E PQ
Sbjct: 124 ERGIYSGNILKNYSKEDL-IAAGKLIDPEKDKLFTYNGLYLLATRYLATDSERNVYELPQ 182
Query: 169 HMLMRVSIGIHKDDI-DSAIK----TYHMMSQRWFTHASPTLFNAGTPRPQLSSCFLVCM 223
+ +++ + +++ + +K Y +S + T A+PTL NAG QLSSCF+ +
Sbjct: 183 ERWLTIALYLMQNEPKEKRMKLVEEAYWALSNLYMTVATPTLANAGKVGGQLSSCFIDTV 242
Query: 224 KDDSIEGIYETLKECAVISKSAGGIGVSVHNIRATGSYIRGTNGTSNGIVPMLRVFNDTA 283
DDS++GIY++ + A +SK GG+G + +R+TG+ IRG G S G++P ++ N+TA
Sbjct: 243 -DDSLQGIYDSNTDVARVSKHGGGVGAYLGYVRSTGAAIRGVKGASGGVIPWIKQLNNTA 301
Query: 284 RYVDQGGGKRKGAFAVYLEPWHADIFEFLNLKKNHGKEEHRARDLFYALWVPDLFMERVQ 343
VDQ G +RKGA AVYL+ +H DI FL+L+ N+G + RA D+F A+ +PD+FME V+
Sbjct: 302 VSVDQLG-QRKGAIAVYLDVFHKDIESFLDLRLNNGDQRLRAHDVFTAVCIPDIFMEAVE 360
Query: 344 TNGQWSLFCPNEASG-----LADCWG-AEFEKLYTH-YER----EGKAKKVVQAQNLWFE 392
G+W LF P+E L D + ++ E + YE E +KK+V+A ++
Sbjct: 361 RRGEWYLFDPHEVKAKKGWYLQDFYDESKGEGTFREKYEELVADETISKKIVKAIDIMKR 420
Query: 393 ILTSQIETGTPYMLFKDTCNRKSNQQNLGTIKSSNLCTEIIEYTSPTETAVCNLASIALP 452
I+ SQ+ETG P+M ++D NR + ++ G + SSNLCTEI++ SPT+ ++ +
Sbjct: 421 IMMSQLETGNPFMFYRDEVNRMNPNKHEGMVYSSNLCTEIMQNMSPTKMIQEIISGDQIV 480
Query: 453 RFVREKDVPVESHPSRIVGSRGSKNRFFDFEKLAEVTAIVTENLNKIIDVNYYPVETARR 512
+ D V + S +G R E+L EV + +N +ID+N PV A
Sbjct: 481 ITKQAGDFVVCNLSSVNLG-RAVVAEEGTLERLIEVEVRMLDN---VIDLNELPVPQATI 536
Query: 513 SNLRHRPIGIGVQGLADTFILLGMAFESPEAQQLNKDIFETIYYHALKTSSEIAAKEGPY 572
+N ++R IG+G G L +A++S EA++ +++E I Y A++ S+++A ++G Y
Sbjct: 537 TNQKYRSIGLGTFGWHHLLALKNIAWDSEEAEKYADELYEQINYLAIRASNKLAQEKGAY 596
Query: 573 ETYHNSPVSKG-ILQPDMWNVIPSDRWDWGVLRDMISKNGVRNSLLVAPMPTASTSQILG 631
+ + S + G +N P +W L +++ G+RN+ LVA P ST+QI G
Sbjct: 597 KVFKGSDWNTGEYFARRNYNS-P----EWQELAKEVAEKGLRNAYLVAVAPNMSTAQIAG 651
Query: 632 NNECFEPYTSNIY 644
+ +P S Y
Sbjct: 652 STASIDPIYSAFY 664
Score = 87 (35.7 bits), Expect = 5.2e-77, Sum P(2) = 5.2e-77
Identities = 27/93 (29%), Positives = 43/93 (46%)
Query: 674 IKNKIIYDDGSVQKIPEIPEELKM----IY-KTVWEIKQMTLVDMAVDRGCYIDQSQSLN 728
I + Y++ + P I +L + Y K +++ Q V R ++DQS S N
Sbjct: 659 IYSAFYYEEKKDYRRPVIAPDLNLSTYPYYEKGAYKVDQFASVRQNGRRQRHVDQSLSFN 718
Query: 729 IHMDQP-NFKKVTSLHFRTWSRGLKTGMYYLRS 760
++ K+ LH W+ GLKT YY+RS
Sbjct: 719 FYVPSGIKASKLLELHMTAWNEGLKT-TYYVRS 750
>TIGR_CMR|NSE_0411 [details] [associations]
symbol:NSE_0411 "ribonucleoside-diphosphate reductase,
alpha subunit" species:222891 "Neorickettsia sennetsu str.
Miyayama" [GO:0004748 "ribonucleoside-diphosphate reductase
activity, thioredoxin disulfide as acceptor" evidence=ISS]
[GO:0009265 "2'-deoxyribonucleotide biosynthetic process"
evidence=ISS] InterPro:IPR000788 InterPro:IPR008926
InterPro:IPR013509 Pfam:PF00317 Pfam:PF02867 PRINTS:PR01183
UniPathway:UPA00326 GO:GO:0005524 GO:GO:0006260 EMBL:CP000237
GenomeReviews:CP000237_GR eggNOG:COG0209 KO:K00525 GO:GO:0005971
GO:GO:0004748 SUPFAM:SSF48168 RefSeq:YP_506298.1 STRING:Q2GDZ8
GeneID:3932191 KEGG:nse:NSE_0411 PATRIC:22680881
HOGENOM:HOG000064500 OMA:EWDLISP ProtClustDB:PRK09102
BioCyc:NSEN222891:GHFU-434-MONOMER Uniprot:Q2GDZ8
Length = 605
Score = 293 (108.2 bits), Expect = 1.7e-60, Sum P(3) = 1.7e-60
Identities = 67/179 (37%), Positives = 108/179 (60%)
Query: 618 VAPMPTASTSQILGNNEC-FEPYTSNIYSRRVLSGEFVVVNKHLLHDLTEMGIWSPTIKN 676
+A PTAS S I GN EPY +N+++++ LSG FVV NKHL L G + + +
Sbjct: 429 IAVAPTASISIIAGNTSPGIEPYAANVFTQKTLSGSFVVKNKHLAALLERKGKNTDCVWS 488
Query: 677 KIIYDDGSVQKIPEIPEELKMIYKTVWEIKQMTLVDMAVDRGCYIDQSQSLNIHMDQPNF 736
II ++GSVQ + + E KM+++T +E+ Q ++++A DR YI QSQS+N+ +
Sbjct: 489 SIISNEGSVQHLDFLDENEKMVFRTAYEMDQRWVIELAADRTPYICQSQSVNLFLHSNIH 548
Query: 737 KK-VTSLHFRTWSRGLKTGMYYLRSRAAADAIKFTVDTSVFKEKPEKPELVVDDETKMA 794
KK +++LHF W +GLK+ +YY RS++ A K + + +K K + P V + + +A
Sbjct: 549 KKELSNLHFLGWKKGLKS-LYYCRSKSIQRAYKISQE---YKHKSDTPSPVGESDDCIA 603
Score = 268 (99.4 bits), Expect = 1.7e-60, Sum P(3) = 1.7e-60
Identities = 68/194 (35%), Positives = 105/194 (54%)
Query: 168 QHMLMRVSIGIHKDDIDSAIKTYHMMSQRWFTHASPTLFNAGTPRPQLSSCFLVCMKDDS 227
Q + RV+ + DD A + Y MS WF A+P L N GT R SCFL +DS
Sbjct: 47 QGLFARVA-KYYSDDPKHACRLYDYMSNLWFMPATPILSNGGTSRGLPVSCFLN-ETEDS 104
Query: 228 IEGIYETLKECAVISKSAGGIGVSVHNIRATGSYIRGTNGTSNGIVPMLRVFNDTARYVD 287
+EGI E ++ GG+G N+R+ G ++ +G ++GI+P + V N +
Sbjct: 105 LEGIVGLWNENVWLASHGGGVGSYWGNLRSIGEKVK-CSGKTSGIIPFIVVQNALTLAIS 163
Query: 288 QGGGKRKGAFAVYLEPWHADIFEFLNLKKNHGKEEHR-ARDLFYALWVPDLFMERVQTNG 346
QG R+G+ AVYL H +I EF++L+K G + +R A +L +A+ + D FM+ V +
Sbjct: 164 QGS-LRRGSSAVYLPVNHPEIIEFIDLRKPTGGDPNRKALNLHHAVVINDDFMKAVLEDK 222
Query: 347 QWSLFCPNEASGLA 360
+W L P + S +A
Sbjct: 223 EWDLISPKDGSVIA 236
Score = 184 (69.8 bits), Expect = 1.7e-60, Sum P(3) = 1.7e-60
Identities = 65/199 (32%), Positives = 92/199 (46%)
Query: 376 REGKAKKVVQAQNLWFEILTSQIETGTPYMLFKDTCNRKSNQ--QNLGT-IKSSNLCTEI 432
++G V A+ +W ILT+++ETG PY+LF DT R +NL +K SNLC+EI
Sbjct: 230 KDGSVIATVGARGIWIRILTARLETGEPYILFIDTVQRLRPDVYKNLNLDVKMSNLCSEI 289
Query: 433 IEYTSPTETAVCNLASIALPRFVREKDVPVESHPSRIVGSRGSKNRFFDFEKLAEVTAIV 492
T A L EK E H + V R + F D ++
Sbjct: 290 TLTTGKDHLDNHRTAICCLSSLNLEKFDEWE-HNEQFV--RDVMH-FLD--------NVL 337
Query: 493 TENLNKIIDVNYYPVETARRSNLRHRPIGIGVQGLADTFILLGMAFESPEAQQLNKDIFE 552
+ + K D + AR S +R R IG+GV G G+ FES A+ +N IF+
Sbjct: 338 EDFIRKAPDC----MHRARYSAMRERSIGLGVMGFHSFLQSKGIPFESAIAKSVNLKIFK 393
Query: 553 TIYYHALKTSSEIAAKEGP 571
I + A K S E+A + GP
Sbjct: 394 KIKHEADKISKEMALERGP 412
>UNIPROTKB|Q9KSK0 [details] [associations]
symbol:VC1256 "Ribonucleoside-diphosphate reductase"
species:243277 "Vibrio cholerae O1 biovar El Tor str. N16961"
[GO:0004748 "ribonucleoside-diphosphate reductase activity,
thioredoxin disulfide as acceptor" evidence=ISS] [GO:0009265
"2'-deoxyribonucleotide biosynthetic process" evidence=ISS]
InterPro:IPR000788 InterPro:IPR008926 InterPro:IPR013346
InterPro:IPR013509 Pfam:PF00317 Pfam:PF02867 PRINTS:PR01183
PROSITE:PS00089 UniPathway:UPA00326 Pfam:PF03477 GO:GO:0005524
GO:GO:0006260 GenomeReviews:AE003852_GR InterPro:IPR005144
PROSITE:PS51161 GO:GO:0009265 KO:K00525 GO:GO:0005971 GO:GO:0004748
SUPFAM:SSF48168 TIGRFAMs:TIGR02506 OMA:YKYGVKT ProtClustDB:PRK09103
HSSP:P00452 EMBL:AE004204 PIR:E82223 RefSeq:NP_230901.1
ProteinModelPortal:Q9KSK0 SMR:Q9KSK0 DNASU:2614693 GeneID:2614693
KEGG:vch:VC1256 PATRIC:20081592 Uniprot:Q9KSK0
Length = 761
Score = 556 (200.8 bits), Expect = 1.6e-56, Sum P(2) = 1.6e-56
Identities = 181/656 (27%), Positives = 291/656 (44%)
Query: 3 VVKRDGRQEAVHFDKITARLKKLSYGLSTEHCDPVLVSQKVCAGVYKGVTTSQLDE-LXX 61
V KRDGR+E + DKI + + GL V + + Y G+TTS + E +
Sbjct: 7 VTKRDGRKENIDLDKIHRVITWAAEGLQNVSVSQVELRAHI--QFYDGITTSDIHETIIK 64
Query: 62 XXXXXXXXNHPDYASLAARIAVSNLHKNTKKSFSE-TIKDMYNHYNERSGLKAPLIADDI 120
PDY LAAR+AV +L K + T+ E+ L+ D
Sbjct: 65 SAADLISEETPDYQYLAARLAVFHLRKKAYGQYEPPTLLAHVTKMVEKGKYDKHLLEDYT 124
Query: 121 YEIIMKNAACLDSEIIXXXXXXXXXXXXKTLERSYLL--KVQGKVVERPQHMLMRVSIGI 178
E + +D I K LE Y + +V G++ E Q + + V+ +
Sbjct: 125 REEL----ELMDQFIDHRRDLDFSYAAVKQLEGKYFVQNRVTGQIYESAQFLYILVAACL 180
Query: 179 H----KDD-IDSAIKTYHMMSQRWFTHASPTLFNAGTPRPQLSSCFLV-CMKDDSIEGIY 232
K+ +D + Y S + +P + TP Q SSC L+ C DS++ I
Sbjct: 181 FAKYPKETRLDYIKRFYDATSTFKISLPTPIMSGVRTPTRQFSSCVLIEC--GDSLDSIN 238
Query: 233 ETLKECAVISKSAGGIGVSVHNIRATGSYIRGTNGTSNGIVPMLRVFNDTARYVDQGGGK 292
T GIG++ IRA GS IRG G +P + F + QGG
Sbjct: 239 ATASSIVRYVSQRAGIGINAGRIRALGSEIRGGEAFHTGCIPFYKYFQTAVKCCSQGG-V 297
Query: 293 RKGAFAVYLEPWHADIFEFLNLKKNHGKEEHRARDLFYALWVPDLFMERVQTNGQWSLFC 352
R GA V+ WH + L LK N G EE+R R + Y + + L +R+ G +LF
Sbjct: 298 RGGAATVFYPLWHGEAESLLVLKNNRGVEENRVRHMDYGVQLNKLMYKRLVEGGNITLFS 357
Query: 353 PNEASGLADCWGA---EFEKLYTHYEREGKAKK-VVQAQNLWFEILTSQIETGTPYMLFK 408
P++ GL D + EFE+LY YE + KK V+A ++ ++ + TG Y+
Sbjct: 358 PSDVPGLYDAFFQDQDEFERLYVKYENDPSIKKKTVKALEIFTLLMQERASTGRIYIQNV 417
Query: 409 DTCNRKSNQQNLGTIKSSNLCTEIIEYTSPTETAVCNLASIALPRFVREKDVPVESHPSR 468
D CN S + +E PT LA++ ++ + + +
Sbjct: 418 DHCNTHSPFD--AAVAPVRQSNLCLEIALPTSP----LANVE----DESGEIALCTLSAF 467
Query: 469 IVGSRGSKNRFFDFEKLAEVTAIVTENLNKIIDVNYYPVETARRSNLRHRPIGIGVQGLA 528
+G+ S + DFE+L++ +V L+ ++D YP+ ARRS++ R +G+GV A
Sbjct: 468 NLGAIESLD---DFEELSD---LVVRALDALLDYQDYPLPAARRSSMNRRTLGVGVINYA 521
Query: 529 DTFILLGMAFESPEAQQLNKDIFETIYYHALKTSSEIAAKEGPYETYHNSPVSKGILQPD 588
G+ + A L FE + YH L+ S ++A ++G +H + +KG++ D
Sbjct: 522 YYLAKNGVKYSDGSANGLTHRTFEAMQYHLLRASMKLAKEQGRCPLFHETNYAKGLMPID 581
Query: 589 MW----NVIPSD--RWDWGVLRDMISKNGVRNSLLVAPMPTASTSQILGNNECFEP 638
+ +++ ++ +DW LR I ++G+RNS L A MP+ ++SQI EP
Sbjct: 582 TYKKDIDLVCAEPLHYDWDKLRHEIMEHGLRNSTLTALMPSETSSQISNATNGIEP 637
Score = 60 (26.2 bits), Expect = 1.6e-56, Sum P(2) = 1.6e-56
Identities = 26/92 (28%), Positives = 41/92 (44%)
Query: 682 DGSV-QKIPEIPEELKMIYKTVWEIKQMT-LVDMAVDRGCYIDQSQSLNIHMDQPNF--- 736
DG + Q +PE LK Y+ +W I + + ++DQ+ S N + D NF
Sbjct: 649 DGILKQVVPEFTR-LKENYELLWNIGSNDGYLHLVGIMQKFVDQAISANTNYDPSNFDSG 707
Query: 737 ----KKVTSLHFRTWSRGLKTGMYYLRSRAAA 764
KK+ + G+KT +YY +R A
Sbjct: 708 KVPMKKLLQDLLTAYKFGVKT-LYYHNTRDGA 738
>TIGR_CMR|VC_1256 [details] [associations]
symbol:VC_1256 "ribonucleoside-diphosphate reductase, alpha
subunit" species:686 "Vibrio cholerae O1 biovar El Tor" [GO:0004748
"ribonucleoside-diphosphate reductase activity, thioredoxin
disulfide as acceptor" evidence=ISS] [GO:0009265
"2'-deoxyribonucleotide biosynthetic process" evidence=ISS]
InterPro:IPR000788 InterPro:IPR008926 InterPro:IPR013346
InterPro:IPR013509 Pfam:PF00317 Pfam:PF02867 PRINTS:PR01183
PROSITE:PS00089 UniPathway:UPA00326 Pfam:PF03477 GO:GO:0005524
GO:GO:0006260 GenomeReviews:AE003852_GR InterPro:IPR005144
PROSITE:PS51161 GO:GO:0009265 KO:K00525 GO:GO:0005971 GO:GO:0004748
SUPFAM:SSF48168 TIGRFAMs:TIGR02506 OMA:YKYGVKT ProtClustDB:PRK09103
HSSP:P00452 EMBL:AE004204 PIR:E82223 RefSeq:NP_230901.1
ProteinModelPortal:Q9KSK0 SMR:Q9KSK0 DNASU:2614693 GeneID:2614693
KEGG:vch:VC1256 PATRIC:20081592 Uniprot:Q9KSK0
Length = 761
Score = 556 (200.8 bits), Expect = 1.6e-56, Sum P(2) = 1.6e-56
Identities = 181/656 (27%), Positives = 291/656 (44%)
Query: 3 VVKRDGRQEAVHFDKITARLKKLSYGLSTEHCDPVLVSQKVCAGVYKGVTTSQLDE-LXX 61
V KRDGR+E + DKI + + GL V + + Y G+TTS + E +
Sbjct: 7 VTKRDGRKENIDLDKIHRVITWAAEGLQNVSVSQVELRAHI--QFYDGITTSDIHETIIK 64
Query: 62 XXXXXXXXNHPDYASLAARIAVSNLHKNTKKSFSE-TIKDMYNHYNERSGLKAPLIADDI 120
PDY LAAR+AV +L K + T+ E+ L+ D
Sbjct: 65 SAADLISEETPDYQYLAARLAVFHLRKKAYGQYEPPTLLAHVTKMVEKGKYDKHLLEDYT 124
Query: 121 YEIIMKNAACLDSEIIXXXXXXXXXXXXKTLERSYLL--KVQGKVVERPQHMLMRVSIGI 178
E + +D I K LE Y + +V G++ E Q + + V+ +
Sbjct: 125 REEL----ELMDQFIDHRRDLDFSYAAVKQLEGKYFVQNRVTGQIYESAQFLYILVAACL 180
Query: 179 H----KDD-IDSAIKTYHMMSQRWFTHASPTLFNAGTPRPQLSSCFLV-CMKDDSIEGIY 232
K+ +D + Y S + +P + TP Q SSC L+ C DS++ I
Sbjct: 181 FAKYPKETRLDYIKRFYDATSTFKISLPTPIMSGVRTPTRQFSSCVLIEC--GDSLDSIN 238
Query: 233 ETLKECAVISKSAGGIGVSVHNIRATGSYIRGTNGTSNGIVPMLRVFNDTARYVDQGGGK 292
T GIG++ IRA GS IRG G +P + F + QGG
Sbjct: 239 ATASSIVRYVSQRAGIGINAGRIRALGSEIRGGEAFHTGCIPFYKYFQTAVKCCSQGG-V 297
Query: 293 RKGAFAVYLEPWHADIFEFLNLKKNHGKEEHRARDLFYALWVPDLFMERVQTNGQWSLFC 352
R GA V+ WH + L LK N G EE+R R + Y + + L +R+ G +LF
Sbjct: 298 RGGAATVFYPLWHGEAESLLVLKNNRGVEENRVRHMDYGVQLNKLMYKRLVEGGNITLFS 357
Query: 353 PNEASGLADCWGA---EFEKLYTHYEREGKAKK-VVQAQNLWFEILTSQIETGTPYMLFK 408
P++ GL D + EFE+LY YE + KK V+A ++ ++ + TG Y+
Sbjct: 358 PSDVPGLYDAFFQDQDEFERLYVKYENDPSIKKKTVKALEIFTLLMQERASTGRIYIQNV 417
Query: 409 DTCNRKSNQQNLGTIKSSNLCTEIIEYTSPTETAVCNLASIALPRFVREKDVPVESHPSR 468
D CN S + +E PT LA++ ++ + + +
Sbjct: 418 DHCNTHSPFD--AAVAPVRQSNLCLEIALPTSP----LANVE----DESGEIALCTLSAF 467
Query: 469 IVGSRGSKNRFFDFEKLAEVTAIVTENLNKIIDVNYYPVETARRSNLRHRPIGIGVQGLA 528
+G+ S + DFE+L++ +V L+ ++D YP+ ARRS++ R +G+GV A
Sbjct: 468 NLGAIESLD---DFEELSD---LVVRALDALLDYQDYPLPAARRSSMNRRTLGVGVINYA 521
Query: 529 DTFILLGMAFESPEAQQLNKDIFETIYYHALKTSSEIAAKEGPYETYHNSPVSKGILQPD 588
G+ + A L FE + YH L+ S ++A ++G +H + +KG++ D
Sbjct: 522 YYLAKNGVKYSDGSANGLTHRTFEAMQYHLLRASMKLAKEQGRCPLFHETNYAKGLMPID 581
Query: 589 MW----NVIPSD--RWDWGVLRDMISKNGVRNSLLVAPMPTASTSQILGNNECFEP 638
+ +++ ++ +DW LR I ++G+RNS L A MP+ ++SQI EP
Sbjct: 582 TYKKDIDLVCAEPLHYDWDKLRHEIMEHGLRNSTLTALMPSETSSQISNATNGIEP 637
Score = 60 (26.2 bits), Expect = 1.6e-56, Sum P(2) = 1.6e-56
Identities = 26/92 (28%), Positives = 41/92 (44%)
Query: 682 DGSV-QKIPEIPEELKMIYKTVWEIKQMT-LVDMAVDRGCYIDQSQSLNIHMDQPNF--- 736
DG + Q +PE LK Y+ +W I + + ++DQ+ S N + D NF
Sbjct: 649 DGILKQVVPEFTR-LKENYELLWNIGSNDGYLHLVGIMQKFVDQAISANTNYDPSNFDSG 707
Query: 737 ----KKVTSLHFRTWSRGLKTGMYYLRSRAAA 764
KK+ + G+KT +YY +R A
Sbjct: 708 KVPMKKLLQDLLTAYKFGVKT-LYYHNTRDGA 738
>UNIPROTKB|P00452 [details] [associations]
symbol:nrdA species:83333 "Escherichia coli K-12"
[GO:0015949 "nucleobase-containing small molecule interconversion"
evidence=IDA] [GO:0005971 "ribonucleoside-diphosphate reductase
complex" evidence=IEA;IDA] [GO:0009263 "deoxyribonucleotide
biosynthetic process" evidence=IDA] [GO:0005524 "ATP binding"
evidence=IEA;IDA] [GO:0004748 "ribonucleoside-diphosphate reductase
activity, thioredoxin disulfide as acceptor" evidence=IEA;IDA]
[GO:0055114 "oxidation-reduction process" evidence=IEA] [GO:0006260
"DNA replication" evidence=IEA] InterPro:IPR000788
InterPro:IPR008926 InterPro:IPR013346 InterPro:IPR013509
Pfam:PF00317 Pfam:PF02867 PRINTS:PR01183 PROSITE:PS00089
UniPathway:UPA00326 Pfam:PF03477 GO:GO:0005524 EMBL:U00096
EMBL:AP009048 GenomeReviews:AP009048_GR GenomeReviews:U00096_GR
GO:GO:0006260 GO:GO:0015949 PDB:1QFN PDBsum:1QFN GO:GO:0009263
EMBL:K02672 InterPro:IPR005144 PROSITE:PS51161 eggNOG:COG0209
KO:K00525 GO:GO:0005971 GO:GO:0004748 SUPFAM:SSF48168
TIGRFAMs:TIGR02506 OMA:YKYGVKT EMBL:X06999 PIR:H64993
RefSeq:NP_416737.1 RefSeq:YP_490473.1 PDB:1R1R PDB:1RLR PDB:2R1R
PDB:2X0X PDB:2XAK PDB:2XAP PDB:2XAV PDB:2XAW PDB:2XAX PDB:2XAY
PDB:2XAZ PDB:2XO4 PDB:2XO5 PDB:3R1R PDB:3UUS PDB:4ERM PDB:4ERP
PDB:4R1R PDB:5R1R PDB:6R1R PDB:7R1R PDBsum:1R1R PDBsum:1RLR
PDBsum:2R1R PDBsum:2X0X PDBsum:2XAK PDBsum:2XAP PDBsum:2XAV
PDBsum:2XAW PDBsum:2XAX PDBsum:2XAY PDBsum:2XAZ PDBsum:2XO4
PDBsum:2XO5 PDBsum:3R1R PDBsum:3UUS PDBsum:4ERM PDBsum:4ERP
PDBsum:4R1R PDBsum:5R1R PDBsum:6R1R PDBsum:7R1R
ProteinModelPortal:P00452 SMR:P00452 DIP:DIP-584N IntAct:P00452
MINT:MINT-1233906 PaxDb:P00452 PRIDE:P00452
EnsemblBacteria:EBESCT00000000432 EnsemblBacteria:EBESCT00000016572
GeneID:12933136 GeneID:946612 KEGG:ecj:Y75_p2196 KEGG:eco:b2234
PATRIC:32119827 EchoBASE:EB0654 EcoGene:EG10660
HOGENOM:HOG000278076 ProtClustDB:PRK09103
BioCyc:EcoCyc:NRDA-MONOMER BioCyc:ECOL316407:JW2228-MONOMER
BioCyc:MetaCyc:NRDA-MONOMER SABIO-RK:P00452
EvolutionaryTrace:P00452 Genevestigator:P00452 Uniprot:P00452
Length = 761
Score = 551 (199.0 bits), Expect = 1.3e-54, Sum P(2) = 1.3e-54
Identities = 193/696 (27%), Positives = 303/696 (43%)
Query: 1 MYVVKRDGRQEAVHFDKITARLKKLSYGLSTEHCDPVLVSQKVCAGVYKGVTTSQLDE-L 59
+ V KRDG E ++ DKI L + GL V + + Y G+ TS + E +
Sbjct: 5 LLVTKRDGSTERINLDKIHRVLDWAAEGLHNVSISQVELRSHI--QFYDGIKTSDIHETI 62
Query: 60 XXXXXXXXXXNHPDYASLAARIAVSNLHKNTKKSFSETIKDMYNHYNE--RSGLKAPLIA 117
+ PDY LAAR+A+ +L K F +Y+H + G +
Sbjct: 63 IKAAADLISRDAPDYQYLAARLAIFHLRKKAYGQFEPPA--LYDHVVKMVEMGKYDNHLL 120
Query: 118 DDIYEIIMKNAACLDSEIIXXXXXXXXXXXXKTLERSYLL--KVQGKVVERPQHMLMRVS 175
+D E K +D+ I K LE YL+ +V G++ E Q + + V+
Sbjct: 121 EDYTEEEFKQ---MDTFIDHDRDMTFSYAAVKQLEGKYLVQNRVTGEIYESAQFLYILVA 177
Query: 176 IGIHKD-----DIDSAIKTYHMMSQRWFTHASPTLFNAGTPRPQLSSCFLV-CMKDDSIE 229
+ + + + Y +S + +P + TP Q SSC L+ C DS++
Sbjct: 178 ACLFSNYPRETRLQYVKRFYDAVSTFKISLPTPIMSGVRTPTRQFSSCVLIEC--GDSLD 235
Query: 230 GIYETLKECAVISKSAGGIGVSVHNIRATGSYIRGTNGTSNGIVPMLRVFNDTARYVDQG 289
I T GIG++ IRA GS IRG G +P + F + QG
Sbjct: 236 SINATSSAIVKYVSQRAGIGINAGRIRALGSPIRGGEAFHTGCIPFYKHFQTAVKSCSQG 295
Query: 290 GGKRKGAFAVYLEPWHADIFEFLNLKKNHGKEEHRARDLFYALWVPDLFMERVQTNGQWS 349
G R GA ++ WH ++ L LK N G E +R R + Y + + L R+ +
Sbjct: 296 G-VRGGAATLFYPMWHLEVESLLVLKNNRGVEGNRVRHMDYGVQINKLMYTRLLKGEDIT 354
Query: 350 LFCPNEASGLADCWGA---EFEKLYTHYEREGKAKKV-VQAQNLWFEILTSQIETGTPYM 405
LF P++ GL D + A EFE+LYT YE++ +K V+A L+ ++ + TG Y+
Sbjct: 355 LFSPSDVPGLYDAFFADQEEFERLYTKYEKDDSIRKQRVKAVELFSLMMQERASTGRIYI 414
Query: 406 LFKDTCNRKSNQQNLGTIKSSNLCTEIIEYTSPTETAVCNLA-SIALPRFVREKDVPVES 464
D CN S +P + NL IALP DV E+
Sbjct: 415 QNVDHCNTHS---------------PFDPAIAPVRQS--NLCLEIALPTKPLN-DVNDEN 456
Query: 465 HPSRIVG-SRGSKNRFFDFEKLAEVTAIVTENLNKIIDVNYYPVETARRSNLRHRPIGIG 523
+ S + + ++L E+ + L+ ++D YP+ A+R + R +GIG
Sbjct: 457 GEIALCTLSAFNLGAINNLDELEELAILAVRALDALLDYQDYPIPAAKRGAMGRRTLGIG 516
Query: 524 VQGLADTFILLGMAFESPEAQQLNKDIFETIYYHALKTSSEIAAKEGPYETYHNSPVSKG 583
V A G + A L FE I Y+ LK S+E+A ++G ++ + +KG
Sbjct: 517 VINFAYYLAKHGKRYSDGSANNLTHKTFEAIQYYLLKASNELAKEQGACPWFNETTYAKG 576
Query: 584 ILQPDMW----NVIPSD--RWDWGVLRDMISKNGVRNSLLVAPMPTASTSQILGNNECFE 637
IL D + + I ++ +DW LR+ I +G+RNS L A MP+ ++SQI E
Sbjct: 577 ILPIDTYKKDLDTIANEPLHYDWEALRESIKTHGLRNSTLSALMPSETSSQISNATNGIE 636
Query: 638 P---YTSNIYSRRVLSGEFVVVNKHLLHDLTEMGIW 670
P Y S S+ + + V +HL HD E+ +W
Sbjct: 637 PPRGYVSIKASKDGILRQVVPDYEHL-HDAYEL-LW 670
Score = 54 (24.1 bits), Expect = 1.3e-54, Sum P(2) = 1.3e-54
Identities = 24/92 (26%), Positives = 40/92 (43%)
Query: 682 DGSVQKIPEIPEELKMIYKTVWEIKQMT-LVDMAVDRGCYIDQSQSLNIHMDQPNFK--K 738
DG ++++ E L Y+ +WE+ + + +IDQS S N + D F K
Sbjct: 649 DGILRQVVPDYEHLHDAYELLWEMPGNDGYLQLVGIMQKFIDQSISANTNYDPSRFPSGK 708
Query: 739 VTSLHF-----RTWSRGLKTGMYYLRSRAAAD 765
V + G+KT +YY +R A+
Sbjct: 709 VPMQQLLKDLLTAYKFGVKT-LYYQNTRDGAE 739
>TIGR_CMR|BA_1371 [details] [associations]
symbol:BA_1371 "ribonucleoside-diphosphate reductase, alpha
subunit, group I intron-containing" species:198094 "Bacillus
anthracis str. Ames" [GO:0004748 "ribonucleoside-diphosphate
reductase activity, thioredoxin disulfide as acceptor"
evidence=ISS] [GO:0009265 "2'-deoxyribonucleotide biosynthetic
process" evidence=ISS] InterPro:IPR000788 InterPro:IPR008926
InterPro:IPR013346 InterPro:IPR013509 InterPro:IPR013554
Pfam:PF00317 Pfam:PF02867 Pfam:PF08343 PRINTS:PR01183
PROSITE:PS00089 UniPathway:UPA00326 GO:GO:0005524 EMBL:AE016879
GenomeReviews:AE016879_GR GO:GO:0006260 GO:GO:0005971 GO:GO:0004748
SUPFAM:SSF48168 TIGRFAMs:TIGR02506 HOGENOM:HOG000246165
InterPro:IPR026459 TIGRFAMs:TIGR04170
EnsemblBacteria:EBBACT00000012288 PATRIC:18780342
ProtClustDB:PRK07632 Uniprot:Q81TB6
Length = 694
Score = 507 (183.5 bits), Expect = 6.3e-54, Sum P(3) = 6.3e-54
Identities = 151/523 (28%), Positives = 256/523 (48%)
Query: 153 RSYLLKV--QGKVVERPQHMLMRVSIGIHKDDIDSAIKTYHMMSQRWFTHASPTLFNAG- 209
+ Y LK Q + +E + + VS+ + + D+ A + M+ ++ + A+PT NAG
Sbjct: 94 KDYALKTNDQKQYLESYEDRVAIVSLYLGRGDVAKAKQFASMIVKQNYQPATPTFLNAGR 153
Query: 210 TPRPQLSSCFLVCMKDDSIEGIYETLKECAVISKSAGGIGVSVHNIRATGSYIRGTNGTS 269
+ R ++ SCFL+ M DDS+ I + +SK GG+ +++ +RA G I+G + +
Sbjct: 154 SRRGEMVSCFLLEM-DDSLNSIGFNINTAMQLSKIGGGVALNLSKLRARGEQIKGIDNAA 212
Query: 270 NGIVPMLRVFNDTARYVDQGGGKRKGAFAVYLEPWHADIFEFLNLKKNHGKEEHRARDLF 329
+G+VP++++ D+ Y +Q G +RKGA AVYL +H DI EFL+ KK + E+ R + L
Sbjct: 213 SGVVPVMKLLEDSFSYANQLG-QRKGAGAVYLNIFHWDIIEFLDSKKINADEKSRIQSLS 271
Query: 330 YALWVPDLFMERVQTNGQWSLFCP----NEASGLADCWGAEFEKLYTHYEREGKAKKV-- 383
+ VP F E + N + +F P E D + +++Y K KK
Sbjct: 272 IGIIVPSKFFELAEKNEPFHVFAPYTVYKEYGKHLD--DIDIDEMYDELMSNPKVKKKPL 329
Query: 384 -VQAQNLWFEILTSQIETGTPYMLFKDTCNRKSNQQNLGTIKSSNLCTEIIEYTSPTETA 442
+ A+++ +I Q+E+G PY++FK N + +++GT+K SNLCTEI + ET+
Sbjct: 330 DISARDMLIKIAMIQLESGYPYLMFKSNANNQHPLKDIGTVKMSNLCTEIFQLQ---ETS 386
Query: 443 VCNLASIALPRFVREKDVPVESHPSRIVGSRGSKNRFFDFEKLAEVTAIVTENLNKIIDV 502
N +R +D+ +GS N + +++ E E L + D+
Sbjct: 387 EIN--DYGTDDIIR-RDINCN------LGSLNIVN-VMENKEIREAVHAGMEALTAVSDM 436
Query: 503 NYYP-VETARRSNLRHRPIGIGVQGLADTFILLGMAFESPEAQQLNKDIFETIYYHALKT 561
P T +++N +G+G L +A+ES EA++ + F + Y++++
Sbjct: 437 TIIPNAPTVKKANDELHSVGLGAMNLHGYLAKNKIAYESEEAKEFARTFFMMLNYYSIEK 496
Query: 562 SSEIAAKEGP------------------YETYHNSPVSKGILQPDMWNVIPSDRWDWGVL 603
S EIA ++G YET SPV++ + Q IP+ DW L
Sbjct: 497 SMEIAKEKGETFKDFDKSDYANGTYFEKYETTDYSPVTEKVQQLFEGIHIPTKE-DWTSL 555
Query: 604 RDMISKNGVRNSLLVAPMPTASTSQILGNNECFEPYTSNIYSR 646
++ + KNG+ NS +A PT S S + P S I SR
Sbjct: 556 KEQVQKNGLYNSYRLAIAPTQSISYVQNATSSVMPIVSQIESR 598
Score = 75 (31.5 bits), Expect = 6.3e-54, Sum P(3) = 6.3e-54
Identities = 17/75 (22%), Positives = 42/75 (56%)
Query: 688 IPEIPEELKMIYKTVWEIKQMTLVDMAVDRGCYIDQSQSLNIHMDQP-NFKKVTSLHFRT 746
+P + ++ YK+ +++ Q L+D+ + +IDQ S ++++ + +++ +
Sbjct: 609 MPYLSKDTFWYYKSSYDMNQFKLIDLIAEIQEHIDQGISTILYVNSDISTRELARYYIYA 668
Query: 747 WSRGLKTGMYYLRSR 761
+GLK+ +YY R+R
Sbjct: 669 HKKGLKS-LYYTRTR 682
Score = 40 (19.1 bits), Expect = 6.3e-54, Sum P(3) = 6.3e-54
Identities = 6/21 (28%), Positives = 12/21 (57%)
Query: 3 VVKRDGRQEAVHFDKITARLK 23
V + R+ VHF+ + R++
Sbjct: 29 VFMEEARENTVHFNSVAERME 49
>TIGR_CMR|CPS_2328 [details] [associations]
symbol:CPS_2328 "ribonucleoside-diphosphate reductase,
alpha subunit" species:167879 "Colwellia psychrerythraea 34H"
[GO:0004748 "ribonucleoside-diphosphate reductase activity,
thioredoxin disulfide as acceptor" evidence=ISS] [GO:0009265
"2'-deoxyribonucleotide biosynthetic process" evidence=ISS]
InterPro:IPR000788 InterPro:IPR008926 InterPro:IPR013346
InterPro:IPR013509 Pfam:PF00317 Pfam:PF02867 PRINTS:PR01183
PROSITE:PS00089 UniPathway:UPA00326 Pfam:PF03477 GO:GO:0005524
GO:GO:0006260 EMBL:CP000083 GenomeReviews:CP000083_GR
InterPro:IPR005144 PROSITE:PS51161 eggNOG:COG0209 KO:K00525
GO:GO:0005971 GO:GO:0004748 SUPFAM:SSF48168 TIGRFAMs:TIGR02506
OMA:YKYGVKT HOGENOM:HOG000278076 ProtClustDB:PRK09103
RefSeq:YP_269048.1 ProteinModelPortal:Q482G9 SMR:Q482G9
STRING:Q482G9 GeneID:3522540 KEGG:cps:CPS_2328 PATRIC:21467749
BioCyc:CPSY167879:GI48-2393-MONOMER Uniprot:Q482G9
Length = 756
Score = 534 (193.0 bits), Expect = 3.2e-53, Sum P(2) = 3.2e-53
Identities = 182/661 (27%), Positives = 285/661 (43%)
Query: 1 MYVVKRDGRQEAVHFDKITARLKKLSYGLSTEHCDPVLVSQKVCAGVYKGVTTSQLDE-L 59
++V KR+G +E + +KI + + GL E V K Y G+ T + E +
Sbjct: 5 LFVTKRNGEKETIDLEKIHRVIAWAADGL--EQVSVSQVELKSHIQFYDGIKTEDIHETI 62
Query: 60 XXXXXXXXXXNHPDYASLAARIAVSNLHKNTKKSFSETIKDMYNHYN---ERSGLKAPLI 116
PDY LAAR+AV +L K F +Y+H E L+
Sbjct: 63 IKSAADLISEETPDYQYLAARLAVFHLRKKAYGQFEPPA--LYDHVVKLVEAGKYDQHLL 120
Query: 117 ADDIYEIIMKNAACLDSEIIXXXXXXXXXXXXKTLERSYLL--KVQGKVVERPQHMLMRV 174
AD + ++ +D K LE YL+ +V G++ E Q + + V
Sbjct: 121 ADYTKDDFEHMSSFMDHS----RDLNFSYAAMKQLEGKYLVQNRVSGEIYESAQFLYILV 176
Query: 175 SIGIH-KDDIDSAIKT----YHMMSQRWFTHASPTLFNAGTPRPQLSSCFLV-CMKDDSI 228
S + K ++S ++ YH +S+ + +P + TP Q SSC L+ C DS+
Sbjct: 177 SACLFAKYPVESRLRYVEDFYHAISRFKISLPTPIMAGVRTPTRQFSSCVLIEC--GDSL 234
Query: 229 EGIYETLKECAVISKSAGGIGVSVHNIRATGSYIRGTNGTSNGIVPMLRVFNDTARYVDQ 288
+ I T GIGV+ IRA GS IR G +P + F + Q
Sbjct: 235 DSINATSSAIVKYVSQRAGIGVNAGRIRALGSTIRNGEAFHTGCIPFFKHFQTAVKSCSQ 294
Query: 289 GGGKRKGAFAVYLEPWHADIFEFLNLKKNHGKEEHRARDLFYALWVPDLFMERVQTNGQW 348
GG R GA ++ WH ++ L LK N G EE+R R L Y + L +R+ G
Sbjct: 295 GG-VRGGAATLFYPLWHLEVESLLVLKNNRGVEENRVRHLDYGVQFNKLMYQRLIKGGSI 353
Query: 349 SLFCPNEASGLADCWGAE---FEKLYTHYEREGKA-KKVVQAQNLWFEILTSQIETGTPY 404
+LF P++ GL D + + FE+LY YE + KK ++A L+ + TG Y
Sbjct: 354 TLFSPSDVPGLYDAFFEDQEKFERLYVQYENDDSIRKKRIKAIELFTLFAQERASTGRIY 413
Query: 405 MLFKDTCNRKSNQQNLGTIKSSNLCTEIIEYTSPTETAVCNLASIALPRFVREKDVPVES 464
+ D CN S SS ++ +C IALP D+ E+
Sbjct: 414 LQNVDHCNTHS------PFDSSKAAIR--------QSNLC--LEIALPTKPMN-DINDEN 456
Query: 465 HPSRIVG-SRGSKNRFFDFEKLAEVTAIVTENLNKIIDVNYYPVETARRSNLRHRPIGIG 523
+ S + ++L + + L+ ++D YP+ A+ +++ R +GIG
Sbjct: 457 GEIALCTLSAFNLGAIDSLDELEGLADLAVRALDSLLDYQDYPIAAAQSASMARRTLGIG 516
Query: 524 VQGLADTFILLGMAFESPEAQQLNKDIFETIYYHALKTSSEIAAKEGPYETYHNSPVSKG 583
V A G+ + + A L FE I ++ LK ++E+A ++G + + +SKG
Sbjct: 517 VINYAYYLAKNGLYYSNGSANNLTHRTFEAIQFYLLKATNELAKEQGACPKFDETLLSKG 576
Query: 584 ILQPDMWNVIPSD------RWDWGVLRDMISKNGVRNSLLVAPMPTASTSQILGNNECFE 637
IL D + D DW LR+ I K+GVRNS + A MP+ ++SQI E
Sbjct: 577 ILPIDTYKKTIDDITGEPLHLDWESLRESIKKHGVRNSTVSALMPSETSSQISNATNGIE 636
Query: 638 P 638
P
Sbjct: 637 P 637
Score = 68 (29.0 bits), Expect = 3.2e-53, Sum P(2) = 3.2e-53
Identities = 28/102 (27%), Positives = 49/102 (48%)
Query: 682 DGSV-QKIPEIPEELKMIYKTVWEIKQ-MTLVDMAVDRGCYIDQSQSLNIHMDQPNF--- 736
DG + Q +PE E+LK Y+ +W I +++ ++DQ+ S N + D F
Sbjct: 649 DGVLKQVVPEY-EKLKGNYELLWNIPDNQGYLELVGIMQKFVDQAISANTNYDPNKFEGG 707
Query: 737 ----KKVTSLHFRTWSRGLKTGMYYLRSR-AAADAIKFTVDT 773
K++ + G+KT +YY +R A+D I+ D+
Sbjct: 708 KVPVKQILKDILTAYKLGVKT-LYYHNTRDGASDDIEIEDDS 748
>UNIPROTKB|I3LEK6 [details] [associations]
symbol:I3LEK6 "Ribonucleoside-diphosphate reductase"
species:9823 "Sus scrofa" [GO:0006260 "DNA replication"
evidence=IEA] [GO:0004748 "ribonucleoside-diphosphate reductase
activity, thioredoxin disulfide as acceptor" evidence=IEA]
[GO:0005971 "ribonucleoside-diphosphate reductase complex"
evidence=IEA] [GO:0005524 "ATP binding" evidence=IEA]
InterPro:IPR000788 InterPro:IPR008926 InterPro:IPR013509
Pfam:PF00317 Pfam:PF02867 UniPathway:UPA00326 GO:GO:0005524
GO:GO:0006260 GO:GO:0005971 GO:GO:0004748 SUPFAM:SSF48168
GeneTree:ENSGT00390000001372 EMBL:CU466349
Ensembl:ENSSSCT00000032470 Uniprot:I3LEK6
Length = 135
Score = 514 (186.0 bits), Expect = 6.9e-49, P = 6.9e-49
Identities = 95/118 (80%), Positives = 112/118 (94%)
Query: 170 MLMRVSIGIHKDDIDSAIKTYHMMSQRWFTHASPTLFNAGTPRPQLSSCFLVCMKDDSIE 229
MLMRVS+GIHK+DID+AI+TY+++S++WFTHASPTLFNAGT RPQLSSCFL+ MKDDSIE
Sbjct: 1 MLMRVSVGIHKEDIDAAIETYNLLSEKWFTHASPTLFNAGTNRPQLSSCFLLSMKDDSIE 60
Query: 230 GIYETLKECAVISKSAGGIGVSVHNIRATGSYIRGTNGTSNGIVPMLRVFNDTARYVD 287
GIY+TLK+CA+ISKSAGGIGV+V IRATGSYI GTNG SNG+VPMLRV+N+TARYVD
Sbjct: 61 GIYDTLKQCALISKSAGGIGVAVSCIRATGSYIAGTNGNSNGLVPMLRVYNNTARYVD 118
>TIGR_CMR|SO_2415 [details] [associations]
symbol:SO_2415 "ribonucleoside-diphosphate reductase, alpha
subunit" species:211586 "Shewanella oneidensis MR-1" [GO:0004748
"ribonucleoside-diphosphate reductase activity, thioredoxin
disulfide as acceptor" evidence=ISS] [GO:0009265
"2'-deoxyribonucleotide biosynthetic process" evidence=ISS]
InterPro:IPR000788 InterPro:IPR008926 InterPro:IPR013346
InterPro:IPR013509 Pfam:PF00317 Pfam:PF02867 PRINTS:PR01183
PROSITE:PS00089 UniPathway:UPA00326 Pfam:PF03477 GO:GO:0005524
GO:GO:0006260 EMBL:AE014299 GenomeReviews:AE014299_GR
InterPro:IPR005144 PROSITE:PS51161 KO:K00525 GO:GO:0005971
GO:GO:0004748 SUPFAM:SSF48168 TIGRFAMs:TIGR02506 OMA:YKYGVKT
HOGENOM:HOG000278076 ProtClustDB:PRK09103 RefSeq:NP_718005.1
HSSP:P00452 ProteinModelPortal:Q8EEG7 SMR:Q8EEG7 GeneID:1170130
KEGG:son:SO_2415 PATRIC:23524447 Uniprot:Q8EEG7
Length = 762
Score = 506 (183.2 bits), Expect = 4.4e-48, Sum P(2) = 4.4e-48
Identities = 181/659 (27%), Positives = 288/659 (43%)
Query: 1 MYVVKRDGRQEAVHFDKITARLKKLSYGLSTEHCDPVLVSQKVCAGVYKGVTTSQLDE-L 59
M V KR G +E + DKI + + GL V + + + G+ T + E +
Sbjct: 5 MTVTKRCGARETIDLDKIHRVITWAAKGLKNVSVSEVELRTHL--QFFDGIPTEAIHETI 62
Query: 60 XXXXXXXXXXNHPDYASLAARIAVSNLHKNTKKSFSETIKDMYNHYNERSGLKAPLIADD 119
PDY LAAR+AV +L K F E K +Y+H + L
Sbjct: 63 IKSAADLISPESPDYQFLAARLAVFHLRKKAFGQF-EPPK-LYDHVTKLVEL-GKYDMHI 119
Query: 120 IYEIIMKNAACLDSEIIXXXXXXXXXXXXKTLERSYLL--KVQGKVVERPQHMLMRVSIG 177
+ + + +D+ I K LE YL+ +V ++ E Q + + V+
Sbjct: 120 LQDYTREELDIMDTYIDHWRDMNFSYAAVKQLEGKYLVQNRVTHEIYESAQFLYILVAAC 179
Query: 178 IH----KDDIDSAIKTYHMMSQRWFTHASPTLFNAG--TPRPQLSSCFLV-CMKDDSIEG 230
+ K+ +K ++ F + PT AG TP Q SSC L+ C DS++
Sbjct: 180 LFARYPKETRLQYVKDFYDAVST-FKISLPTPIMAGVRTPTRQFSSCVLIEC--GDSLDS 236
Query: 231 IYETLKECAVISKSAGGIGVSVHNIRATGSYIRGTNGTSNGIVPMLRVFNDTARYVDQGG 290
I T GIG++ IRA GS IRG G +P + F + QGG
Sbjct: 237 INATASSIVKYVSQRAGIGINAGRIRALGSPIRGGEAFHTGCLPFYKYFQTAVKSCSQGG 296
Query: 291 GKRKGAFAVYLEPWHADIFEFLNLKKNHGKEEHRARDLFYALWVPDLFMERVQTNGQWSL 350
R GA ++ WH ++ L LK N G E++R R L Y + + L +R+ SL
Sbjct: 297 -VRGGAATLFYPIWHLEVESLLVLKNNRGVEDNRIRHLDYGVQLNKLMYQRLIKGESISL 355
Query: 351 FCPNEASGLADCW---GAEFEKLYTHYEREGKA-KKVVQAQNLWFEILTSQIETGTPYML 406
F P++ GL D + AEFE+LY YE++ KK ++A +L+ ++ + TG Y+
Sbjct: 356 FSPSDVPGLYDAFFEDQAEFERLYLQYEQDSSIRKKTLKAVDLFSLMMQERASTGRIYIQ 415
Query: 407 FKDTCNRKSNQQNLGTIKSSNLCTEIIEYTSPTETAVCNLASIALP-RFVREKDVPVESH 465
D CN S + K + + ++ +C IALP + + D P
Sbjct: 416 NVDHCNTHSPFDS----KVAPI----------RQSNLC--LEIALPTKPLNNIDDP-NGE 458
Query: 466 PSRIVGSRGSKNRFFDFEKLAEVTAIVTENLNKIIDVNYYPVETARRSNLRHRPIGIGVQ 525
+ S + D +L + + L+ ++D YP++ A+ S++ R +GIGV
Sbjct: 459 IALCTLSALNLGTITDLAELEPLADLAVRALDNLLDYQDYPIKAAQISSMNRRTLGIGVI 518
Query: 526 GLADTFILLGMAFESPEAQQLNKDIFETIYYHALKTSSEIAAKEGPYETYHNSPVSKGIL 585
A+ GM + A L FE I ++ LK S +A ++G ++ + ++GIL
Sbjct: 519 NFANYLAKNGMKYSDGSANNLTHKTFEAIQFYLLKASMNLAKEKGACPLFNETTYAQGIL 578
Query: 586 QPDMW----NVIPSD--RWDWGVLRDMISKNGVRNSLLVAPMPTASTSQILGNNECFEP 638
D + + I S+ DW LR I + G+RNS L A MP+ ++SQI EP
Sbjct: 579 PIDTYKRDLDKICSEPLHLDWEALRSDIKEYGLRNSTLSALMPSETSSQISNATNGIEP 637
Score = 58 (25.5 bits), Expect = 4.4e-48, Sum P(2) = 4.4e-48
Identities = 25/92 (27%), Positives = 44/92 (47%)
Query: 682 DGSV-QKIPEIPEELKMIYKTVWEIKQMT-LVDMAVDRGCYIDQSQSLNIHMDQPNF--K 737
DG + Q +P+ + LK Y+ +W++ + + ++DQ+ S N + D F +
Sbjct: 649 DGQLKQVVPDF-DTLKNNYELLWQMPSNEGYLQLVGIMQKFVDQAISANTNYDPARFEGR 707
Query: 738 KV---TSLH--FRTWSRGLKTGMYYLRSRAAA 764
KV T L + G+KT +YY +R A
Sbjct: 708 KVPMQTLLKDLLNAYKLGVKT-LYYHNTRDGA 738
>TIGR_CMR|GSU_1871 [details] [associations]
symbol:GSU_1871 "ribonucleoside-diphosphate reductase,
putative" species:243231 "Geobacter sulfurreducens PCA" [GO:0004748
"ribonucleoside-diphosphate reductase activity, thioredoxin
disulfide as acceptor" evidence=ISS] [GO:0005971
"ribonucleoside-diphosphate reductase complex" evidence=ISS]
[GO:0009265 "2'-deoxyribonucleotide biosynthetic process"
evidence=ISS] InterPro:IPR000788 InterPro:IPR008926
InterPro:IPR013344 InterPro:IPR013509 Pfam:PF00317 Pfam:PF02867
PRINTS:PR01183 UniPathway:UPA00326 GO:GO:0005524 GO:GO:0006260
EMBL:AE017180 GenomeReviews:AE017180_GR GO:GO:0031419
HOGENOM:HOG000229277 KO:K00525 GO:GO:0005971 GO:GO:0004748
SUPFAM:SSF48168 TIGRFAMs:TIGR02504 InterPro:IPR024434 Pfam:PF12637
OMA:IFDAVKH ProtClustDB:PRK08665 RefSeq:NP_952920.1
ProteinModelPortal:Q74C05 GeneID:2686773 KEGG:gsu:GSU1871
PATRIC:22026607 BioCyc:GSUL243231:GH27-1839-MONOMER Uniprot:Q74C05
Length = 743
Score = 257 (95.5 bits), Expect = 4.7e-44, Sum P(4) = 4.7e-44
Identities = 71/215 (33%), Positives = 112/215 (52%)
Query: 151 LERSYLLK-VQGKVVERPQHMLMRVSIGI--------HKDDIDS-AIKTYHMMSQRWFTH 200
LE+ YL + G V+E P M RV+ I K D+ + A + Y +M+ F
Sbjct: 22 LEKRYLKRDTGGNVLETPVDMFQRVARSIAEADKNFDKKADVKALAAQFYELMTSFEFLP 81
Query: 201 ASPTLFNAGTPRPQLSSCFLVCMKDDSIEGIYETLKECAVISKSAGGIGVSVHNIRATGS 260
SPTL NAG QLS+CF++ + DS+E I++ +K A+I KS GG G S +R
Sbjct: 82 NSPTLMNAGRELGQLSACFVLPV-GDSMEDIFDAVKYTALIHKSGGGTGFSFSRLRPAHD 140
Query: 261 YIRGTNGTSNGIVPMLRVFNDTARYVDQGGGKRKGAFAVYLEPWHADIFEFLNLKKNHGK 320
+R T+G S+G + +RVF+ + QGG R+GA L H DI +F+ K +
Sbjct: 141 VVRSTSGISSGPISFMRVFDAATETIKQGG-TRRGANMGILRVDHPDIMDFIMCKDD--- 196
Query: 321 EEHRARDLFYALWVPDLFMERVQTNGQWSLFCPNE 355
++H + ++ + + FME V+ + + L P +
Sbjct: 197 QKH-LNNFNISVGLTEAFMEAVERDADYDLINPRD 230
Score = 147 (56.8 bits), Expect = 4.7e-44, Sum P(4) = 4.7e-44
Identities = 33/103 (32%), Positives = 53/103 (51%)
Query: 476 KNRFFDFEKLAEVTAIVTENLNKIIDVNYYPVETARRSNLRHRPIGIGVQGLADTFILLG 535
KN ++++L +V + L+ +I+VN YP+ +R IG+GV G AD ILLG
Sbjct: 305 KNGDVNWDRLRDVVRLAVHFLDNVIEVNNYPLPQISEMTRANRKIGLGVMGWADMLILLG 364
Query: 536 MAFESPEAQQLNKDIFETIYYHALKTSSEIAAKEGPYETYHNS 578
+ + SP+A L + + I S E+AA G + + S
Sbjct: 365 IPYNSPQAISLGEKVMRFINDEGHVYSRELAAVRGSFPNFAGS 407
Score = 131 (51.2 bits), Expect = 4.7e-44, Sum P(4) = 4.7e-44
Identities = 50/198 (25%), Positives = 89/198 (44%)
Query: 601 GVLRDMISKNGVRNSLLVAPMPTASTSQILGNNECFEPYTSNIYSRRVLSGEFVVVNKHL 660
G + D S+ +RN+ + PT + S I + EP + + R+VL +V +
Sbjct: 406 GSIYDRASEGPIRNATVTTIAPTGTISIIANASSGVEPLFAVSFIRQVLDKNILVEVNPI 465
Query: 661 LHDLT-EMGIWSPTIKNKIIYDDGSVQKIPEIPEELKMIYKTVWEIKQMTLVDMAVDRGC 719
++ + G +S + KI G++ +PEIPE+++ I+ T +I ++M
Sbjct: 466 FEEVARQRGFYSEELMQKIARH-GTIHDLPEIPEDIRKIFVTAHDITPEDHIEMQAAFQK 524
Query: 720 YIDQSQSLNIHMDQPN---FKKVTSLHFRTWSRGLKTGMYYLRSRAAADAIKFTVDTSVF 776
Y D + S ++ PN + V ++ + G K G+ R + + + + T V
Sbjct: 525 YTDNAVSKTVNF--PNSAAIEDVEKVYRLAYKSGCK-GVTIYRDGSRDEQV---LSTGV- 577
Query: 777 KEKPEKPELVVDDETKMA 794
KE EK VV E K A
Sbjct: 578 KEDKEK---VVQTEEKRA 592
Score = 104 (41.7 bits), Expect = 4.7e-44, Sum P(4) = 4.7e-44
Identities = 27/85 (31%), Positives = 46/85 (54%)
Query: 376 REGKAKKVVQAQNLWFEILTSQIETGTPYMLFKDTCNRKSNQQNLGTIKSSNLCTEIIEY 435
R+GK + A+ ++ I+ + G P ++F D N+ + ++G I+S+N C E +
Sbjct: 229 RDGKPCGTLNARKVFSRIVKQAWKNGEPGIIFLDRLNKDNPTPHVGVIESTNPCGE--QP 286
Query: 436 TSPTETAVCNLASIALPRFVREKDV 460
P E+ CNL SI L + V+ DV
Sbjct: 287 LLPYES--CNLGSINLGKMVKNGDV 309
>TIGR_CMR|ECH_0459 [details] [associations]
symbol:ECH_0459 "ribonucleoside-diphosphate reductase,
alpha subunit" species:205920 "Ehrlichia chaffeensis str. Arkansas"
[GO:0004748 "ribonucleoside-diphosphate reductase activity,
thioredoxin disulfide as acceptor" evidence=ISS] [GO:0009265
"2'-deoxyribonucleotide biosynthetic process" evidence=ISS]
InterPro:IPR000788 InterPro:IPR008926 InterPro:IPR013346
InterPro:IPR013509 Pfam:PF00317 Pfam:PF02867 PRINTS:PR01183
UniPathway:UPA00326 GO:GO:0005524 EMBL:CP000236
GenomeReviews:CP000236_GR GO:GO:0006260 eggNOG:COG0209 KO:K00525
GO:GO:0005971 GO:GO:0004748 SUPFAM:SSF48168 TIGRFAMs:TIGR02506
HOGENOM:HOG000064500 ProtClustDB:PRK09102 RefSeq:YP_507276.1
STRING:Q2GH07 GeneID:3927177 KEGG:ech:ECH_0459 PATRIC:20576390
OMA:GALEKSI BioCyc:ECHA205920:GJNR-460-MONOMER Uniprot:Q2GH07
Length = 595
Score = 296 (109.3 bits), Expect = 8.0e-44, Sum P(2) = 8.0e-44
Identities = 91/294 (30%), Positives = 145/294 (49%)
Query: 168 QHMLMRVSIGIHKDDIDSAIKTYHMMSQRWFTHASPTLFNAGTPRPQLSSCFLVCMKDDS 227
Q + +R+S + D+ + A + Y MSQ WF A+P L N GT R SCFL +DS
Sbjct: 34 QQLFVRIS-EYYSDNPEHAQRLYDYMSQLWFMPATPILSNGGTNRGLPVSCFLN-ETEDS 91
Query: 228 IEGIYETLKECAVISKSAGGIGVSVHNIRATGSYIRGTNGTSNGIVPMLRVFNDTARYVD 287
+ GI E ++ GGIG N+R+ G +RG+ TS GI+P + V N +
Sbjct: 92 LRGIVNLWNENVWLASKGGGIGSYWGNLRSIGEKVRGSGKTS-GIIPFIVVQNALTLAIS 150
Query: 288 QGGGKRKGAFAVYLEPWHADIFEFLNLKKNHGKEEHR-ARDLFYALWVPDLFMERVQTNG 346
QG R+G+ AVYL WH +I EFL+L+K G + +R A ++ + + + + FM+ V+ +
Sbjct: 151 QGS-LRRGSSAVYLPVWHPEIEEFLDLRKPTGGDPNRKALNIHHGVVLSNKFMKCVENDE 209
Query: 347 QWSLFCPNEASGLADCWGAE-FEKLYTHYEREGKAKKVVQAQNLWFEILTSQIETGTPYM 405
W L P + S L + + K+ T G+ + + Q++ P
Sbjct: 210 PWDLISPKDQSVLFTIKARDIWIKILTTRVETGEP----------YILFIDQVDNNKPE- 258
Query: 406 LFKDTCNRKSNQQNLGTIKSSNLCTEIIEYTSPTETAVCNLASIALPRFVREKD 459
++K N NL T L T ++ + + TA+C LAS+ L + + KD
Sbjct: 259 IYK-RLNLDIKMSNLCT--EITLTTGY-DHLNKSRTAICCLASLNLEYYEQWKD 308
Score = 246 (91.7 bits), Expect = 8.0e-44, Sum P(2) = 8.0e-44
Identities = 59/157 (37%), Positives = 92/157 (58%)
Query: 614 NSLLVAPMPTASTSQILGNNEC-FEPYTSNIYSRRVLSGEFVVVNKHLLHDLTEMGIWSP 672
N L +AP TAS S I GN EPY +N+++ + L+G F+V NK L L G +
Sbjct: 414 NKLSIAP--TASISIIAGNTSPGIEPYAANVFTHKTLTGSFIVRNKFLQKLLKLKGKDNE 471
Query: 673 TIKNKIIYDDGSVQKIPEIPEELKMIYKTVWEIKQMTLVDMAVDRGCYIDQSQSLNIHMD 732
+ + I ++GSVQ + + EE K+I+KT +E+ Q +++ DR YI Q+QS+NI +
Sbjct: 472 QVWSSISTNEGSVQHLDFLTEEEKLIFKTAYELDQRWIIEHTSDRSKYICQAQSVNIFLP 531
Query: 733 QPNFKK-VTSLHFRTWSRGLKTGMYYLRSRAAADAIK 768
K+ + +HF W +GLK+ +YY RS++ A K
Sbjct: 532 ANVHKRYLHKIHFLAWRKGLKS-LYYCRSKSIQRADK 567
Score = 161 (61.7 bits), Expect = 2.9e-29, Sum P(2) = 2.9e-29
Identities = 61/191 (31%), Positives = 91/191 (47%)
Query: 384 VQAQNLWFEILTSQIETGTPYMLFKDTC--NRKSNQQNLGT-IKSSNLCTEIIEYTSPTE 440
++A+++W +ILT+++ETG PY+LF D N+ + L IK SNLCTEI T T
Sbjct: 225 IKARDIWIKILTTRVETGEPYILFIDQVDNNKPEIYKRLNLDIKMSNLCTEI---TLTTG 281
Query: 441 TAVCNLASIALPRFVREKDVPVESHPSRIVGSRGSKNRFFDFEKLAEVTAIVTENLNKII 500
N + A+ + +E + + N F + +V + L I
Sbjct: 282 YDHLNKSRTAICCLA---SLNLEYY------EQWKDNSLF----IEDVMRFLDNVLTDFI 328
Query: 501 DVNYYPVETARRSNLRHRPIGIGVQGLADTFILLGMA-FESPEAQQLNKDIFETIYYHAL 559
+ +E A+ S +R R IG+GV G +F+ M FES A NK IF I HA
Sbjct: 329 EKAPSEMERAKYSAMRERSIGVGVMGF-HSFLQSKMIPFESVAATIWNKKIFSHIRKHAD 387
Query: 560 KTSSEIAAKEG 570
S IA ++G
Sbjct: 388 AASYNIAMEKG 398
Score = 39 (18.8 bits), Expect = 1.6e-16, Sum P(2) = 1.6e-16
Identities = 6/14 (42%), Positives = 10/14 (71%)
Query: 121 YEIIMKNAACLDSE 134
Y I M+ +CLD++
Sbjct: 391 YNIAMEKGSCLDAQ 404
Score = 38 (18.4 bits), Expect = 5.0e-22, Sum P(2) = 5.0e-22
Identities = 11/29 (37%), Positives = 15/29 (51%)
Query: 432 IIEYTSPTETAVCNLAS--IALPRFVREK 458
IIE+TS +C S I LP V ++
Sbjct: 509 IIEHTSDRSKYICQAQSVNIFLPANVHKR 537
>UNIPROTKB|H0YCY7 [details] [associations]
symbol:RRM1 "Ribonucleoside-diphosphate reductase"
species:9606 "Homo sapiens" [GO:0005524 "ATP binding" evidence=IEA]
[GO:0005971 "ribonucleoside-diphosphate reductase complex"
evidence=IEA] [GO:0004748 "ribonucleoside-diphosphate reductase
activity, thioredoxin disulfide as acceptor" evidence=IEA]
[GO:0006260 "DNA replication" evidence=IEA] InterPro:IPR000788
InterPro:IPR008926 InterPro:IPR013509 Pfam:PF00317 Pfam:PF02867
UniPathway:UPA00326 GO:GO:0005524 GO:GO:0006260 GO:GO:0005971
GO:GO:0004748 SUPFAM:SSF48168 HGNC:HGNC:10451 ChiTaRS:RRM1
EMBL:AC015689 Ensembl:ENST00000528442 Uniprot:H0YCY7
Length = 130
Score = 463 (168.0 bits), Expect = 3.1e-43, P = 3.1e-43
Identities = 86/105 (81%), Positives = 98/105 (93%)
Query: 189 TYHMMSQRWFTHASPTLFNAGTPRPQLSSCFLVCMKDDSIEGIYETLKECAVISKSAGGI 248
TY+++S+RWFTHASPTLFNAGT RPQLSSCFL+ MKDDSIEGIY+TLK+CA+ISKSAGGI
Sbjct: 2 TYNLLSERWFTHASPTLFNAGTNRPQLSSCFLLSMKDDSIEGIYDTLKQCALISKSAGGI 61
Query: 249 GVSVHNIRATGSYIRGTNGTSNGIVPMLRVFNDTARYVDQGGGKR 293
GV+V IRATGSYI GTNG SNG+VPMLRV+N+TARYVDQGG KR
Sbjct: 62 GVAVSCIRATGSYIAGTNGNSNGLVPMLRVYNNTARYVDQGGNKR 106
>TIGR_CMR|APH_0331 [details] [associations]
symbol:APH_0331 "ribonucleoside-diphosphate reductase,
alpha subunit" species:212042 "Anaplasma phagocytophilum HZ"
[GO:0004748 "ribonucleoside-diphosphate reductase activity,
thioredoxin disulfide as acceptor" evidence=ISS] [GO:0005971
"ribonucleoside-diphosphate reductase complex" evidence=ISS]
[GO:0009265 "2'-deoxyribonucleotide biosynthetic process"
evidence=ISS] InterPro:IPR000788 InterPro:IPR008926
InterPro:IPR013509 Pfam:PF00317 Pfam:PF02867 PRINTS:PR01183
UniPathway:UPA00326 GO:GO:0005524 GO:GO:0006260 EMBL:CP000235
GenomeReviews:CP000235_GR eggNOG:COG0209 KO:K00525 GO:GO:0005971
GO:GO:0004748 SUPFAM:SSF48168 HOGENOM:HOG000064500
ProtClustDB:PRK09102 RefSeq:YP_504939.1 ProteinModelPortal:Q2GL12
STRING:Q2GL12 GeneID:3931250 KEGG:aph:APH_0331 PATRIC:20949246
OMA:CEIIEYS BioCyc:APHA212042:GHPM-360-MONOMER Uniprot:Q2GL12
Length = 603
Score = 281 (104.0 bits), Expect = 3.1e-41, Sum P(2) = 3.1e-41
Identities = 68/189 (35%), Positives = 103/189 (54%)
Query: 168 QHMLMRVSIGIHKDDIDSAIKTYHMMSQRWFTHASPTLFNAGTPRPQLSSCFLVCMKDDS 227
Q + +RV+ + DD A + Y MS+ WF A+P L N GT R SCFL +DS
Sbjct: 41 QQLFVRVA-QYYSDDSQHAQRLYDYMSKLWFMPATPILSNGGTSRGLPISCFLN-ETEDS 98
Query: 228 IEGIYETLKECAVISKSAGGIGVSVHNIRATGSYIRGTNGTSNGIVPMLRVFNDTARYVD 287
+ GI E ++ GGIG N+R+ G +RG+ TS GI+P + V N +
Sbjct: 99 LAGILNLWNENVWLASRGGGIGSYWGNLRSIGERVRGSGKTS-GIIPFIVVQNALTLAIS 157
Query: 288 QGGGKRKGAFAVYLEPWHADIFEFLNLKKNHGKEEHR-ARDLFYALWVPDLFMERVQTNG 346
QG R+G+ AVYL WH +I EFL++++ G + +R A ++ + + + D FME V+ +
Sbjct: 158 QGS-LRRGSSAVYLPVWHPEIEEFLDIRRPTGGDPNRKALNIHHGVLLSDEFMEAVEHDK 216
Query: 347 QWSLFCPNE 355
W L P +
Sbjct: 217 TWDLLSPKD 225
Score = 238 (88.8 bits), Expect = 3.1e-41, Sum P(2) = 3.1e-41
Identities = 54/155 (34%), Positives = 91/155 (58%)
Query: 622 PTASTSQILGNNEC-FEPYTSNIYSRRVLSGEFVVVNKHLLHDLTEMGIWSPTIKNKIIY 680
PTAS S I GN EPY +N+++ + L+G F+V NK L L G + + I
Sbjct: 427 PTASISIIAGNTSPGIEPYAANVFTHKTLTGSFIVRNKFLQELLKSKGKDDDQVWSSIST 486
Query: 681 DDGSVQKIPEIPEELKMIYKTVWEIKQMTLVDMAVDRGCYIDQSQSLNIHMDQPNFKK-V 739
++GSVQ + + + K+++KT +E+ Q +++ + DR YI Q+QS+NI + K+ +
Sbjct: 487 NEGSVQHLDFLTDHEKLVFKTAYELDQRWVIEHSGDRTPYICQAQSVNIFLPAGVHKRYL 546
Query: 740 TSLHFRTWSRGLKTGMYYLRSRAA--ADAIKFTVD 772
+HF W +GLK+ +YY+RS++ AD + V+
Sbjct: 547 HKVHFLAWKKGLKS-LYYMRSKSVQRADKVSHEVN 580
Score = 191 (72.3 bits), Expect = 1.7e-31, Sum P(2) = 1.7e-31
Identities = 83/276 (30%), Positives = 131/276 (47%)
Query: 312 LNLKKNHGKEEHRARDLFYALWVPDL--FME-RVQTNGQWSLFCPNEASG--LADCW--G 364
L L + G + ++ +W P++ F++ R T G + N G L+D +
Sbjct: 152 LTLAISQGSLRRGSSAVYLPVWHPEIEEFLDIRRPTGGDPNRKALNIHHGVLLSDEFMEA 211
Query: 365 AEFEKLYTHYEREGKAK-KVVQAQNLWFEILTSQIETGTPYMLFKDTCNRKSNQ--QNLG 421
E +K + + K V+A++LW +ILT+++ETG PY++F D NR + + LG
Sbjct: 212 VEHDKTWDLLSPKDKCVISTVKARDLWIKILTTRVETGEPYIIFVDAVNRCKPEIYKKLG 271
Query: 422 T-IKSSNLCTEII-----EYTSPTETAVCNLASIALPRFVREKDVPVESHPSRIVGSRGS 475
+K SNLCTEI ++ + TAVC L+S+ L + D+ +P I
Sbjct: 272 LDVKMSNLCTEITLTTGEDHLKKSRTAVCCLSSLNLEYY----DMWC-GNPQFIEDVM-- 324
Query: 476 KNRFFDFEKLAEVTAIVTENLNKIIDVNYYPVETARRSNLRHRPIGIGVQGLADTFILLG 535
RF D ++T+ + K +E AR S +R R IGIGV G +F+
Sbjct: 325 --RFLD--------NVLTDFVQKAPT----ELERARYSAMRERSIGIGVMGF-HSFLQSK 369
Query: 536 MA-FESPEAQQLNKDIFETIYYHALKTSSEIAAKEG 570
M FES A NK IF + A S ++A ++G
Sbjct: 370 MVPFESFAATMWNKKIFSYLKSQADAVSRKLALEKG 405
>TIGR_CMR|CHY_0676 [details] [associations]
symbol:CHY_0676 "ribonucleoside-diphosphate reductase,
adenosylcobalamin-dependent, intein-containing" species:246194
"Carboxydothermus hydrogenoformans Z-2901" [GO:0005971
"ribonucleoside-diphosphate reductase complex" evidence=ISS]
[GO:0015949 "nucleobase-containing small molecule interconversion"
evidence=ISS] InterPro:IPR000788 InterPro:IPR004042
InterPro:IPR006141 InterPro:IPR006142 InterPro:IPR008926
InterPro:IPR013344 InterPro:IPR013509 Pfam:PF00317 Pfam:PF02867
PRINTS:PR00379 PROSITE:PS50817 PROSITE:PS50819 UniPathway:UPA00326
GO:GO:0005524 EMBL:CP000141 GenomeReviews:CP000141_GR GO:GO:0006260
GO:GO:0004519 GO:GO:0031419 InterPro:IPR003587 SMART:SM00306
GO:GO:0016539 TIGRFAMs:TIGR01445 eggNOG:COG0209
HOGENOM:HOG000229277 KO:K00525 GO:GO:0005971 GO:GO:0004748
SUPFAM:SSF48168 TIGRFAMs:TIGR02504 InterPro:IPR024434 Pfam:PF12637
RefSeq:YP_359531.1 STRING:Q3AEA3 GeneID:3727979 KEGG:chy:CHY_0676
PATRIC:21274485 OMA:IFDAVKH BioCyc:CHYD246194:GJCN-676-MONOMER
Uniprot:Q3AEA3
Length = 1101
Score = 290 (107.1 bits), Expect = 3.1e-38, Sum P(3) = 3.1e-38
Identities = 87/270 (32%), Positives = 141/270 (52%)
Query: 149 KTLERSYLLKVQ-GKVVERPQHMLMRVSIGI--------HKDDIDSAIKTYHMMSQRWFT 199
K LE YL + + G+V+E P+ M RV+ I D+ + A + Y+ M+ F
Sbjct: 10 KVLEARYLARNEKGEVIETPEEMFWRVARAIAQAEKNYAENDEEEIAREFYNFMTALDFL 69
Query: 200 HASPTLFNAGTPRPQLSSCFLVCMKDDSIEGIYETLKECAVISKSAGGIGVSVHNIRATG 259
+PTL NAG P QLS+CF++ + DS+E I++ +K A+I KS GG G S +RA G
Sbjct: 70 PNTPTLVNAGRPLGQLSACFVLPV-GDSMEEIFDAVKYSALIHKSGGGTGFSFSRLRAKG 128
Query: 260 SYIRGTNGTSNGIVPMLRVFNDTARYVDQGGGKRKGAFAVYLEPWHADIFEFLNLKKNHG 319
+ +R T G ++G V ++VFN V QGG R+GA L H DI EF+
Sbjct: 129 ARVRSTGGIASGPVSFMKVFNAATEAVKQGG-VRRGANMGVLRCDHPDILEFIT-----A 182
Query: 320 KEEHRARDLF-YALWVPDLFMERVQTNGQWSLFCPNEASGLADCWGAE-FEKLYTHYERE 377
KE++R F ++ + D FM+ ++ +G++ L P+ + E FE++ + +
Sbjct: 183 KEDNRDITNFNISVALTDKFMKALEEDGEYELIEPSTGEVVGRLRAREVFERIARNAWKN 242
Query: 378 GKAKKV----VQAQNLWFEILTSQIETGTP 403
G+ + + A N+ E+ +IE+ P
Sbjct: 243 GEPGVIFIDRINAANVVPEL--GEIESTNP 270
Score = 149 (57.5 bits), Expect = 3.1e-38, Sum P(3) = 3.1e-38
Identities = 34/110 (30%), Positives = 56/110 (50%)
Query: 476 KNRFFDFEKLAEVTAIVTENLNKIIDVNYYPVETARRSNLRHRPIGIGVQGLADTFILLG 535
K+ D+E L + + L+ +IDVN+YP+ + + R IG+GV G AD I L
Sbjct: 639 KDGEIDWEHLEKTVKLAVRFLDNVIDVNHYPLPEIEKMTKKTRKIGLGVMGFADMLIKLN 698
Query: 536 MAFESPEAQQLNKDIFETIYYHALKTSSEIAAKEGPYETYHNSP-VSKGI 584
+ ++S EA L + E I + + S+E+A G + + S KG+
Sbjct: 699 IPYDSEEALNLADKVMEFINKKSKEASAELARVRGTFPAWKKSVWAKKGL 748
Score = 108 (43.1 bits), Expect = 3.1e-38, Sum P(3) = 3.1e-38
Identities = 45/181 (24%), Positives = 77/181 (42%)
Query: 608 SKNGV--RNSLLVAPMPTASTSQILGNNECFEPYTSNIYSRRVLSGEFVV-VNKHLLHDL 664
+K G+ RN+ PT S S I G + EP + + R +L + +V V++
Sbjct: 744 AKKGLKLRNATTTTIAPTGSISIIAGVSSGIEPVFALAFKRHILDRKDIVEVHRLFEQHA 803
Query: 665 TEMGIWSPTIKNKIIYDDGSVQKIPEIPEELKMIYKTVWEIKQMTLVDMAVDRGCYIDQS 724
E G +S + N++ G + I +PEE K ++ T +I V M + D +
Sbjct: 804 RENGYYSEKLMNEVA-KTGRITGIAGVPEEAKRLFVTALDIAPEWHVKMQAVFQKHTDNA 862
Query: 725 QSLNIHM-DQPNFKKVTSLHFRTWSRGLKTGMYYLRSRAAADAIKFTVDTSVFKEKPEKP 783
S I+M + + V + + G K G+ R + + + + K K EKP
Sbjct: 863 VSKTINMPNSATVEDVKESYLLAYKLGCK-GLTVYRDGSREEQV-LNAGLNETK-KDEKP 919
Query: 784 E 784
E
Sbjct: 920 E 920
Score = 55 (24.4 bits), Expect = 3.4e-13, Sum P(3) = 3.4e-13
Identities = 13/46 (28%), Positives = 25/46 (54%)
Query: 384 VQAQNLWFEILTSQIETGTPYMLFKDTCNRKSNQQNLGTIKSSNLC 429
++A+ ++ I + + G P ++F D N + LG I+S+N C
Sbjct: 226 LRAREVFERIARNAWKNGEPGVIFIDRINAANVVPELGEIESTNPC 271
Score = 41 (19.5 bits), Expect = 4.9e-27, Sum P(3) = 4.9e-27
Identities = 10/27 (37%), Positives = 15/27 (55%)
Query: 444 CNLASIALPRFVREKDVPVESHPSRIV 470
CNL SI L V++ ++ E H + V
Sbjct: 627 CNLGSINLANMVKDGEIDWE-HLEKTV 652
>TIGR_CMR|DET_0345 [details] [associations]
symbol:DET_0345 "ribonucleotide reductase" species:243164
"Dehalococcoides ethenogenes 195" [GO:0004748
"ribonucleoside-diphosphate reductase activity, thioredoxin
disulfide as acceptor" evidence=ISS] [GO:0009265
"2'-deoxyribonucleotide biosynthetic process" evidence=ISS]
InterPro:IPR000788 InterPro:IPR008926 InterPro:IPR013344
InterPro:IPR013509 Pfam:PF00317 Pfam:PF02867 PRINTS:PR01183
UniPathway:UPA00326 GO:GO:0005524 GO:GO:0006260 EMBL:CP000027
GenomeReviews:CP000027_GR GO:GO:0031419 eggNOG:COG0209
HOGENOM:HOG000229277 KO:K00525 GO:GO:0005971 GO:GO:0004748
SUPFAM:SSF48168 TIGRFAMs:TIGR02504 InterPro:IPR024434 Pfam:PF12637
OMA:IFDAVKH RefSeq:YP_181092.1 ProteinModelPortal:Q3Z9K7
STRING:Q3Z9K7 GeneID:3230364 KEGG:det:DET0345 PATRIC:21607759
ProtClustDB:PRK08665 BioCyc:DETH243164:GJNF-345-MONOMER
Uniprot:Q3Z9K7
Length = 761
Score = 248 (92.4 bits), Expect = 8.6e-38, Sum P(4) = 8.6e-38
Identities = 79/231 (34%), Positives = 118/231 (51%)
Query: 151 LERSYLLK-VQGKVVERPQHMLMRVS----IG--IH--KDDIDSAI-KTYHMMSQRWFTH 200
LER YL K QGK E + M RV+ +G I+ K D+ S + Y++M++ F
Sbjct: 30 LERRYLKKDKQGKPSETVEDMFRRVARTIAMGELIYNPKADVRSREDEFYNIMTRLEFLP 89
Query: 201 ASPTLFNAGTPRPQLSSCFLVCMKDDSIEGIYETLKECAVISKSAGGIGVSVHNIRATGS 260
SPTL NAG QLS+CF++ + DDSIE I++ +K A+I KS GG G S +R
Sbjct: 90 NSPTLMNAGRELGQLSACFVLPV-DDSIESIFDAVKHTAMIHKSGGGTGFSFSRLRPEQD 148
Query: 261 YIRGTNGTSNGIVPMLRVFNDTARYVDQGGGKRKGAFAVYLEPWHADIFEFLNLKKNHGK 320
+ T G ++G V +R F D A V + GG R+GA L H DI +F++ K G
Sbjct: 149 RVGTTGGVASGPVSFMRAF-DVATDVIKQGGTRRGANMAILSIDHPDIMKFIHAKDKAGV 207
Query: 321 EEHRARDLFYALWVPDLFMERVQTNGQWSLFCPNEASGLADCWGAE-FEKL 370
+ ++ + D FM+ V+ + L P+ ++ E F K+
Sbjct: 208 ----LTNFNLSVAITDKFMQAVKDGVDYDLLNPHNGEVVSRLNATEVFNKI 254
Score = 153 (58.9 bits), Expect = 8.6e-38, Sum P(4) = 8.6e-38
Identities = 37/116 (31%), Positives = 59/116 (50%)
Query: 467 SRIVGSRGSKNRFFDFEKLAEVTAIVTENLNKIIDVNYYPVETARRSNLRHRPIGIGVQG 526
SR+V G + D++KL+ V L+ +IDVN +P+ + R IG+GV G
Sbjct: 309 SRMVTVSGGQ-AVVDYKKLSRVVKSAVRFLDNVIDVNKFPLPQIEEMTKKSRKIGLGVMG 367
Query: 527 LADTFILLGMAFESPEAQQLNKDIFETIYYHALKTSSEIAAKEGPYETYHNSPVSK 582
AD + LG+ + S + +L ++I + A K SSE+A + G + Y S K
Sbjct: 368 FADMLLELGIPYNSENSIKLAEEIMCFVNEEAHKFSSELAVERGVFPAYRGSIYEK 423
Score = 91 (37.1 bits), Expect = 8.6e-38, Sum P(4) = 8.6e-38
Identities = 29/92 (31%), Positives = 46/92 (50%)
Query: 364 GAEFEKLYTHYEREGKAKKVVQAQNLWFEILTSQIETGTPYMLFKDTCNRKSNQQNLGTI 423
G +++ L H G+ + A ++ +I+ +TG P ++F D N + LG I
Sbjct: 228 GVDYDLLNPH---NGEVVSRLNATEVFNKIVHMAWKTGDPGIVFIDRINAYNPTPQLGRI 284
Query: 424 KSSNLCTEIIEYTSPTETAVCNLASIALPRFV 455
+S+N C E + P E+ CNL SI L R V
Sbjct: 285 ESTNPCGE--QPLLPYES--CNLGSINLSRMV 312
Score = 88 (36.0 bits), Expect = 8.6e-38, Sum P(4) = 8.6e-38
Identities = 48/210 (22%), Positives = 88/210 (41%)
Query: 609 KNG--VRNSLLVAPMPTASTSQILGNNECFEPYTSNIYSRRVLSG-EFVVVNKHLLHDLT 665
K+G +RN+ PT + S I G + EP+ + ++R +L G + + VN +
Sbjct: 423 KSGRPMRNASCTTIAPTGTLSIIAGCSSGIEPHFALCFTRNILDGTKMIEVNPYFERAAK 482
Query: 666 EMGIWSPTIKNKIIYDDGSVQKIPEIPEELKMIYKTVWEIKQMTLVDM-AVDRGCYIDQS 724
E G +S + + +G+ ++P E K ++ T +I V + A + C D +
Sbjct: 483 EGGYYSEELIKSLA--EGAHLDEADVPAEAKELFVTAHQIVPEWHVRIQAAFQKC-TDNA 539
Query: 725 QSLNIHMDQPNFK-KVTSLHFRTWSRGLKTGMYYLRSRAAADAIKFTVDTSVFKEKPEKP 783
S ++ + + V ++ LK G+ R + D + T + K E P
Sbjct: 540 VSKTVNFSREAVEGDVAEVYKMAHDSNLK-GITIYRDGSREDQ---PMSTGKAENKIETP 595
Query: 784 ELVVDDET---KMAQVVCSLTNREECMACG 810
VV+ K ++V +T R CG
Sbjct: 596 AAVVNPNLAPRKRSKVTQGITERVTT-GCG 624
>UNIPROTKB|P39452 [details] [associations]
symbol:nrdE species:83333 "Escherichia coli K-12"
[GO:0005737 "cytoplasm" evidence=ISA] [GO:0015949
"nucleobase-containing small molecule interconversion"
evidence=IGI] [GO:0004748 "ribonucleoside-diphosphate reductase
activity, thioredoxin disulfide as acceptor" evidence=IEA;IGI]
[GO:0005971 "ribonucleoside-diphosphate reductase complex"
evidence=IEA;IGI] [GO:0009263 "deoxyribonucleotide biosynthetic
process" evidence=IGI] [GO:0003824 "catalytic activity"
evidence=IEA] [GO:0055114 "oxidation-reduction process"
evidence=IEA] [GO:0016491 "oxidoreductase activity" evidence=IEA]
[GO:0006260 "DNA replication" evidence=IEA] [GO:0005524 "ATP
binding" evidence=IEA] [GO:0000166 "nucleotide binding"
evidence=IEA] InterPro:IPR000788 InterPro:IPR008926
InterPro:IPR013346 InterPro:IPR013509 InterPro:IPR013554
Pfam:PF00317 Pfam:PF02867 Pfam:PF08343 PRINTS:PR01183
PROSITE:PS00089 UniPathway:UPA00326 GO:GO:0005524 EMBL:U00096
EMBL:AP009048 GenomeReviews:AP009048_GR GenomeReviews:U00096_GR
GO:GO:0006260 GO:GO:0015949 GO:GO:0009263 EMBL:X79787
eggNOG:COG0209 KO:K00525 GO:GO:0005971 GO:GO:0004748
SUPFAM:SSF48168 TIGRFAMs:TIGR02506 HOGENOM:HOG000246165 OMA:VSRIEIR
ProtClustDB:PRK08188 InterPro:IPR026459 TIGRFAMs:TIGR04170
EMBL:M31530 PIR:D65047 RefSeq:NP_417161.1 RefSeq:YP_490890.1
ProteinModelPortal:P39452 SMR:P39452 DIP:DIP-359N IntAct:P39452
PRIDE:P39452 EnsemblBacteria:EBESCT00000003305
EnsemblBacteria:EBESCT00000016977 GeneID:12930227 GeneID:947155
KEGG:ecj:Y75_p2618 KEGG:eco:b2675 PATRIC:32120740 EchoBASE:EB4158
EcoGene:EG20257 BioCyc:EcoCyc:NRDE-MONOMER
BioCyc:ECOL316407:JW2650-MONOMER BioCyc:MetaCyc:NRDE-MONOMER
Genevestigator:P39452 Uniprot:P39452
Length = 714
Score = 424 (154.3 bits), Expect = 7.7e-37, P = 7.7e-37
Identities = 152/528 (28%), Positives = 242/528 (45%)
Query: 154 SYLLKV-QGK-VVERPQHMLMRVSIGIHKDDIDSAIK-TYHMMSQRWFTHASPTLFNAGT 210
SY LK GK +E + V++ + + D A++ T M+S R F A+PT N G
Sbjct: 111 SYTLKTFDGKRYLEDFADRVTMVALTLAQGDETLALQLTDEMLSGR-FQPATPTFLNCGK 169
Query: 211 P-RPQLSSCFLVCMKDDSIEGIYETLKECAVISKSAGGIGVSVHNIRATGSYIRGTNGTS 269
R +L SCFL+ + +D++E I + +SK GG+ + N+R G+ I+ S
Sbjct: 170 QQRGELVSCFLLRI-EDNMESIGRAVNSALQLSKRGGGVAFLLSNLREAGAPIKRIENQS 228
Query: 270 NGIVPMLRVFNDTARYVDQGGGKRKGAFAVYLEPWHADIFEFLNLKKNHGKEEHRARDLF 329
+G++P++++ D Y +Q G R+GA AVYL H DI FL+ K+ + E+ R + L
Sbjct: 229 SGVIPVMKMLEDAFSYANQLGA-RQGAGAVYLHAHHPDILRFLDTKRENADEKIRIKTLS 287
Query: 330 YALWVPDLFMERVQTNGQWSLFCPNEASGLADCWGAEFEK--LYTHYER----EGKAKKV 383
+ +PD+ + N Q +LF P + + +G F + HY+ E KK
Sbjct: 288 LGVVIPDITFHLAKENAQMALFSPYDVERV---YGKPFADVAISQHYDELVADERIRKKY 344
Query: 384 VQAQNLWFEILTSQIETGTPYMLFKDTCNRKSNQQNLGTIKSSNLCTEIIEYTSPTETAV 443
+ A++ + + Q E+G PY++++DT NR + G I SNLC+EI++ S +E
Sbjct: 345 LNARDFFQRLAEIQFESGYPYIMYEDTVNRAN--PIAGRINMSNLCSEILQVNSASEYDE 402
Query: 444 CNLASIALPRFVRE-KDVPVESHPSRIVGSRGSKNRFFDFEKLAEVTAIVTENLNKIIDV 502
NL + R D+ I + S DF + E TA+ L + D+
Sbjct: 403 -NLD------YTRTGHDISCNLGSLNIAHTMDSP----DFARTVE-TAV--RGLTAVSDM 448
Query: 503 NYY-PVETARRSNLRHRPIGIGVQGLADTFILLGMAFESPEAQQLNKDIFETIYYHALKT 561
++ V + N IG+G L G+A+ SPEA F I +HAL+T
Sbjct: 449 SHIRSVPSIEAGNAASHAIGLGQMNLHGYLAREGIAYGSPEALDFTNLYFYAITWHALRT 508
Query: 562 SSEIAAKEGPYETY------------HNSPVSKGILQPDMWNV----------IPSDRWD 599
S +A + G ET+ + S +G QP V +P+ R
Sbjct: 509 SMLLARERG--ETFAGFKQSRYASGEYFSQYLQGNWQPKTAKVGELFTRSGITLPT-REM 565
Query: 600 WGVLRDMISKNGVRNSLLVAPMPTASTSQILGNNECFEPYTSNIYSRR 647
W LRD + + G+ N L A PT S S I P + + R+
Sbjct: 566 WAQLRDDVMRYGIYNQNLQAVPPTGSISYINHATSSIHPIVAKVEIRK 613
Score = 143 (55.4 bits), Expect = 4.8e-06, P = 4.8e-06
Identities = 64/293 (21%), Positives = 121/293 (41%)
Query: 481 DFEKLAEVTAIVTENLNKIIDVNYY-PVETARRSNLRHRPIGIGVQGLADTFILLGMAFE 539
DF + E TA+ L + D+++ V + N IG+G L G+A+
Sbjct: 430 DFARTVE-TAV--RGLTAVSDMSHIRSVPSIEAGNAASHAIGLGQMNLHGYLAREGIAYG 486
Query: 540 SPEAQQLNKDIFETIYYHALKTSSEIAAKEGPYETYHNSPVSKGILQPDMWNVIPSDRWD 599
SPEA F I +HAL+TS +A + G ET+ S+ + ++ W
Sbjct: 487 SPEALDFTNLYFYAITWHALRTSMLLARERG--ETFAGFKQSR-YASGEYFSQYLQGNWQ 543
Query: 600 WGVLR--DMISKNGVRNSLLVAPMPTAST-SQILGNNECFEPYTSNIYSRRVLSGEFVVV 656
+ ++ +++G+ +PT +Q+ + + Y N+ + +G +
Sbjct: 544 PKTAKVGELFTRSGIT-------LPTREMWAQLRDDVMRYGIYNQNLQAVPP-TGSISYI 595
Query: 657 NKHLLHDLTEMGIWSPTIKNKIIYDDGSVQKI----PEIPEELKMIYKTVWEIKQMTLVD 712
N H + + P + I +G ++ P + E +Y+ +EI ++D
Sbjct: 596 N----HATSSI---HPIVAKVEIRKEGKTGRVYYPAPFMTNENLALYQDAYEIGAEKIID 648
Query: 713 MAVDRGCYIDQSQSLNIHM-DQPNFKKVTSLHFRTWSRGLKTGMYYLRSRAAA 764
+ ++DQ SL + D + + W +G+KT +YY+R R A
Sbjct: 649 TYAEATRHVDQGLSLTLFFPDTATTRDINKAQIYAWRKGIKT-LYYIRLRQMA 700
>TIGR_CMR|DET_0623 [details] [associations]
symbol:DET_0623 "ribonucleotide reductase" species:243164
"Dehalococcoides ethenogenes 195" [GO:0004748
"ribonucleoside-diphosphate reductase activity, thioredoxin
disulfide as acceptor" evidence=ISS] [GO:0009265
"2'-deoxyribonucleotide biosynthetic process" evidence=ISS]
InterPro:IPR000788 InterPro:IPR008926 InterPro:IPR013344
InterPro:IPR013509 Pfam:PF00317 Pfam:PF02867 PRINTS:PR01183
UniPathway:UPA00326 GO:GO:0005524 GO:GO:0006260 EMBL:CP000027
GenomeReviews:CP000027_GR GO:GO:0031419 eggNOG:COG0209
HOGENOM:HOG000229277 KO:K00525 GO:GO:0005971 GO:GO:0004748
SUPFAM:SSF48168 TIGRFAMs:TIGR02504 RefSeq:YP_181365.1
ProteinModelPortal:Q3Z8T4 STRING:Q3Z8T4 GeneID:3230018
KEGG:det:DET0623 PATRIC:21608313 OMA:FIDRIND ProtClustDB:CLSK837372
BioCyc:DETH243164:GJNF-624-MONOMER Uniprot:Q3Z8T4
Length = 599
Score = 261 (96.9 bits), Expect = 1.5e-36, Sum P(3) = 1.5e-36
Identities = 72/216 (33%), Positives = 116/216 (53%)
Query: 149 KTLERSYLLK-VQGKVVERPQHMLMRVSIGI------HKDDID-SAIKT--YHMMSQRWF 198
+ LE+ YL K G+V+E P+ M RV+ + + D S I+ Y MS+ F
Sbjct: 22 RVLEKRYLKKDANGRVIETPEDMFRRVARVVASAECKYAPGADTSRIEDEFYQAMSRLEF 81
Query: 199 THASPTLFNAGTPRPQLSSCFLVCMKDDSIEGIYETLKECAVISKSAGGIGVSVHNIRAT 258
SPTL NAG QLS+CF++ + +DSIE I++ +K+ A+I KS GG G S N+R
Sbjct: 82 LPNSPTLLNAGRQVGQLSACFVLPV-EDSIESIFDAVKQTALIHKSGGGTGFSFSNLRPA 140
Query: 259 GSYIRGTNGTSNGIVPMLRVFNDTARYVDQGGGKRKGAFAVYLEPWHADIFEFLNLKKNH 318
G + + G V ++ +F+ A YV QGG R+G A L+ H DI +F++ K
Sbjct: 141 GDKVGELTEVAGGPVSVINIFSAAADYVRQGG-VRRGCNAAILDVTHPDILKFISCK--- 196
Query: 319 GKEEHRARDLFYALWVPDLFMERVQTNGQWSLFCPN 354
G + + + + ++ V FM +V++ + + P+
Sbjct: 197 G-DPNALTNFYISVVVTREFMTKVRSGEDYDIINPH 231
Score = 173 (66.0 bits), Expect = 1.5e-36, Sum P(3) = 1.5e-36
Identities = 65/231 (28%), Positives = 102/231 (44%)
Query: 444 CNLASIALPRFVREKDVPVESHPSRIVGSRGSKNRFFDFEKLAEVTAIVTENLNKIIDVN 503
CNL SI+LPR ++ +D R+V D+EKL + L+ +IDVN
Sbjct: 295 CNLGSISLPRMLK-RD------GERVV---------VDYEKLGRTVKMAIRFLDNVIDVN 338
Query: 504 YYPVETARRSNLRHRPIGIGVQGLADTFILLGMAFESPEAQQLNKDIFETIYYHALKTSS 563
+P ++ LR+R IG+GV G AD +L+G+ + S EA I E I + + SS
Sbjct: 339 RFPTPEIEKATLRNRKIGLGVMGFADMLVLMGIPYNSEEAIFQADQIMEFIKETSHRASS 398
Query: 564 EIAAKEGPYETYHNSPVSKGILQPDMWNVIPSDRWDWGVLRDMIS-KNGVRNSL-LVAPM 621
++A G + Y S +P M N + G L + +G+ S +V
Sbjct: 399 KLAEARGSFPAYEGSIYDVPGGRP-MRNATCTSIAPTGTLSIIAGVSSGIEPSFAMVFVR 457
Query: 622 PTASTSQILGNNECFEPYT--SNIYSRRVLSGEFVVVNKHLLHDLTEMGIW 670
+L N FE +S+ + E +V + HL HD+ + W
Sbjct: 458 NILDGENLLEINPYFEEMARREGFHSKELF--EKLVSSNHL-HDMECVPDW 505
Score = 85 (35.0 bits), Expect = 1.5e-36, Sum P(3) = 1.5e-36
Identities = 27/78 (34%), Positives = 41/78 (52%)
Query: 382 KVVQAQNLW--FEILTSQI-ETGTPYMLFKDTCNRKSNQQNLGTIKSSNLCTEIIEYTSP 438
+VVQ N F+ + Q +TG P ++F D N + LG I+ + C E + P
Sbjct: 234 EVVQRLNAACVFDCIVDQAWKTGDPGLVFIDRINDDNPTPELGRIRHVSGCGE--QTLLP 291
Query: 439 TETAVCNLASIALPRFVR 456
E+ CNL SI+LPR ++
Sbjct: 292 YES--CNLGSISLPRMLK 307
>UNIPROTKB|P0A5W8 [details] [associations]
symbol:nrdE "Ribonucleoside-diphosphate reductase subunit
alpha" species:1773 "Mycobacterium tuberculosis" [GO:0004748
"ribonucleoside-diphosphate reductase activity, thioredoxin
disulfide as acceptor" evidence=IDA] [GO:0005515 "protein binding"
evidence=IPI] [GO:0005524 "ATP binding" evidence=IDA] [GO:0005886
"plasma membrane" evidence=IDA] [GO:0005971
"ribonucleoside-diphosphate reductase complex" evidence=IDA]
[GO:0006260 "DNA replication" evidence=IDA] [GO:0009263
"deoxyribonucleotide biosynthetic process" evidence=IDA]
[GO:0040007 "growth" evidence=IMP] [GO:0051063 "CDP reductase
activity" evidence=IDA] [GO:0055114 "oxidation-reduction process"
evidence=IDA] InterPro:IPR000788 InterPro:IPR008926
InterPro:IPR013346 InterPro:IPR013509 InterPro:IPR013554
Pfam:PF00317 Pfam:PF02867 Pfam:PF08343 PRINTS:PR01183
PROSITE:PS00089 UniPathway:UPA00326 GO:GO:0005886 GO:GO:0005524
GO:GO:0040007 EMBL:AE000516 GenomeReviews:AE000516_GR
GenomeReviews:AL123456_GR GO:GO:0006260 EMBL:BX842581 GO:GO:0009263
eggNOG:COG0209 KO:K00525 GO:GO:0005971 SUPFAM:SSF48168
TIGRFAMs:TIGR02506 EMBL:L34407 PIR:F70861 RefSeq:NP_217567.1
RefSeq:NP_337654.1 ProteinModelPortal:P0A5W8 SMR:P0A5W8
EnsemblBacteria:EBMYCT00000003419 EnsemblBacteria:EBMYCT00000070027
GeneID:888869 GeneID:923996 KEGG:mtc:MT3137 KEGG:mtu:Rv3051c
PATRIC:18128658 TubercuList:Rv3051c HOGENOM:HOG000246165
OMA:VSRIEIR ProtClustDB:PRK08188 GO:GO:0051063 InterPro:IPR026459
TIGRFAMs:TIGR04170 Uniprot:P0A5W8
Length = 725
Score = 414 (150.8 bits), Expect = 1.1e-35, P = 1.1e-35
Identities = 143/521 (27%), Positives = 239/521 (45%)
Query: 154 SYLLKV-QGK-VVERPQHMLMRVSIGIHKDDIDSAIKTYHMMSQRWFTHASPTLFNAGTP 211
SY LK GK +ER + ++ V++ + D A + F A+PT N+G
Sbjct: 122 SYTLKTFDGKRYLERFEDRVVMVALTLAAGDTALAELLVDEIIDGRFQPATPTFLNSGKK 181
Query: 212 -RPQLSSCFLVCMKDDSIEGIYETLKECAVISKSAGGIGVSVHNIRATGSYIRGTNGTSN 270
R + SCFL+ + +D++E I ++ +SK GG+ + + NIR G+ I+ S+
Sbjct: 182 QRGEPVSCFLLRV-EDNMESIGRSINSALQLSKRGGGVALLLTNIREHGAPIKNIENQSS 240
Query: 271 GIVPMLRVFNDTARYVDQGGGKRKGAFAVYLEPWHADIFEFLNLKKNHGKEEHRARDLFY 330
G++P++++ D Y +Q G R+GA AVYL H DI+ FL+ K+ + E+ R + L
Sbjct: 241 GVIPIMKLLEDAFSYANQLGA-RQGAGAVYLHAHHPDIYRFLDTKRENADEKIRIKTLSL 299
Query: 331 ALWVPDLFMERVQTNGQWSLFCPNEASGLADCWGAEFEKLYTHYER--EGKAKKV-VQAQ 387
+ +PD+ E + N LF P + + A+ +YE + + +K ++A+
Sbjct: 300 GVVIPDITFELAKRNDDMYLFSPYDVERVYGVPFADISVTEKYYEMVDDARIRKTKIKAR 359
Query: 388 NLWFEILTSQIETGTPYMLFKDTCNRKSNQQNLGTIKSSNLCTEIIEYTSPTETAVCNLA 447
+ + Q E+G PY++F+DT NR +N + G I SNLC+EI++ ++P+ L
Sbjct: 360 EFFQTLAELQFESGYPYIMFEDTVNR-ANPID-GKITHSNLCSEILQVSTPS------LF 411
Query: 448 SIALPRFVREKDVPVESHPSRIVGSRGSKNRFFDFEKLAEVTAIVTENLNKIIDVNYYP- 506
+ L KD+ I + S DF + EV AI L + D +
Sbjct: 412 NEDLSYAKVGKDISCNLGSLNIAKTMDSP----DFAQTIEV-AI--RALTAVSDQTHIKS 464
Query: 507 VETARRSNLRHRPIGIGVQGLADTFILLGMAFESPEAQQLNKDIFETIYYHALKTSSEIA 566
V + + N IG+G L + + S E F T+ YHAL+ S+ IA
Sbjct: 465 VPSIEQGNNDSHAIGLGQMNLHGYLARERIFYGSDEGIDFTNIYFYTVLYHALRASNRIA 524
Query: 567 AKEGP-YETYHNSPVSKG---------ILQPDMWNV----------IPSDRWDWGVLRDM 606
+ G ++ + S + G I +P V IP+ DW L++
Sbjct: 525 IERGTHFKGFERSKYASGEFFDKYTDQIWEPKTQKVRQLFADAGIRIPTQD-DWRRLKES 583
Query: 607 ISKNGVRNSLLVAPMPTASTSQILGNNECFEPYTSNIYSRR 647
+ +G+ N L A PT S S I + P S + R+
Sbjct: 584 VQAHGIYNQNLQAVPPTGSISYINHSTSSIHPIVSKVEIRK 624
Score = 131 (51.2 bits), Expect = 9.7e-05, P = 9.7e-05
Identities = 68/339 (20%), Positives = 131/339 (38%)
Query: 439 TETAVCN-LASIALPRFVREKDVPVESHPSRIVGSRGSKN--RFFDFEKLAEVTAIVTEN 495
T + +C+ + ++ P E D+ I + GS N + D A+ +
Sbjct: 394 THSNLCSEILQVSTPSLFNE-DLSYAKVGKDISCNLGSLNIAKTMDSPDFAQTIEVAIRA 452
Query: 496 LNKIIDVNYYP-VETARRSNLRHRPIGIGVQGLADTFILLGMAFESPEAQQLNKDIFETI 554
L + D + V + + N IG+G L + + S E F T+
Sbjct: 453 LTAVSDQTHIKSVPSIEQGNNDSHAIGLGQMNLHGYLARERIFYGSDEGIDFTNIYFYTV 512
Query: 555 YYHALKTSSEIAAKEGP-YETYHNSPVSKGILQPDMWNVIPSDRWDWGV--LRDMISKNG 611
YHAL+ S+ IA + G ++ + S + G + ++ W+ +R + + G
Sbjct: 513 LYHALRASNRIAIERGTHFKGFERSKYASG----EFFDKYTDQIWEPKTQKVRQLFADAG 568
Query: 612 VRNSLLVAPMPTASTSQILGNN-ECFEPYTSNIYSRRVLSGEFVVVNKHLLHDLTEMGIW 670
+R +PT + L + + Y N+ + +G +N H + +
Sbjct: 569 IR-------IPTQDDWRRLKESVQAHGIYNQNLQAVPP-TGSISYIN----HSTSSI--- 613
Query: 671 SPTIKNKIIYDDGSVQKI----PEIPEELKMIYKTVWEIKQMTLVDMAVDRGCYIDQSQS 726
P + I +G + ++ P + + Y+ +EI ++D ++DQ S
Sbjct: 614 HPIVSKVEIRKEGKIGRVYYPAPYMTNDNLEYYEDAYEIGYEKIIDTYAAATQHVDQGLS 673
Query: 727 LNIHM-DQPNFKKVTSLHFRTWSRGLKTGMYYLRSRAAA 764
L + D + V W +G+KT +YY+R R A
Sbjct: 674 LTLFFKDTATTRDVNKAQIYAWRKGIKT-LYYIRLRQMA 711
>UNIPROTKB|Q0C1X7 [details] [associations]
symbol:HNE_1555 "Ribonucleoside-diphosphate reductase"
species:228405 "Hyphomonas neptunium ATCC 15444" [GO:0009265
"2'-deoxyribonucleotide biosynthetic process" evidence=ISS]
InterPro:IPR000788 InterPro:IPR013344 InterPro:IPR013509
Pfam:PF00317 Pfam:PF02867 PRINTS:PR01183 UniPathway:UPA00326
GO:GO:0005524 GO:GO:0006260 EMBL:CP000158 GenomeReviews:CP000158_GR
GO:GO:0031419 GO:GO:0009265 eggNOG:COG0209 KO:K00525 OMA:QMATFDI
GO:GO:0005971 GO:GO:0004748 TIGRFAMs:TIGR02504 InterPro:IPR024434
Pfam:PF12637 RefSeq:YP_760266.1 STRING:Q0C1X7 GeneID:4287134
KEGG:hne:HNE_1555 PATRIC:32215933 HOGENOM:HOG000229278
ProtClustDB:CLSK2780972 BioCyc:HNEP228405:GI69-1588-MONOMER
Uniprot:Q0C1X7
Length = 731
Score = 194 (73.4 bits), Expect = 9.5e-29, Sum P(3) = 9.5e-29
Identities = 56/184 (30%), Positives = 93/184 (50%)
Query: 467 SRIVGSRGSKNRFFDFEKLAEVTAIVTENLNKIIDVNYYPVETARRSNLRHRPIGIGVQG 526
+R+V S + + +L +T L+ +ID++ YP+E R +G+GV G
Sbjct: 286 ARLVSSPFEADAKIELTELETLTETAIRFLDNVIDISRYPLEQQGEEARAKRRLGLGVTG 345
Query: 527 LADTFILLGMAFESPEAQQLNKDIFETIYYHALKTSSEIAAKEGPYETYHNSPVSKGIL- 585
LAD I G A+ S +A L++ I A + S+ +AA++GPY + K IL
Sbjct: 346 LADALIFCGAAYGSDKAVALSERWMGAIKRAAYRASAHLAAEKGPYPLF-----DKAILD 400
Query: 586 QPDMWNVIPSDRWDWGVLRDMISKNGVRNSLLVAPMPTASTSQILGN-NECFEPYTSNIY 644
+P++ + P R +IS++G+RN L + PT +TS + N + EP + Y
Sbjct: 401 RPNLLGLDPDTR-------ALISEHGLRNGCLTSIAPTGTTSLLADNVSSGVEPVFAFSY 453
Query: 645 SRRV 648
SR+V
Sbjct: 454 SRKV 457
Score = 172 (65.6 bits), Expect = 9.5e-29, Sum P(3) = 9.5e-29
Identities = 45/154 (29%), Positives = 77/154 (50%)
Query: 198 FTHASPTLFNAGTPRP-QLSSCFLVCMKDDSIEGIYETLKECAVISKSAGGIGVSVHNIR 256
F A L AGT R L +CF++ D++ GI+E L+E AV + GG+G+ IR
Sbjct: 64 FIPAGRILAGAGTARNVTLFNCFVMGTLPDNLPGIFEHLREAAVTLQQGGGVGMDFSTIR 123
Query: 257 ATGSYIRGTNGTSNGIVPMLRVFNDTARYVDQGGGKRKGAFAVYLEPWHADIFEFLNLKK 316
+G+ + G ++G + + ++ R + G+R+GA L H DI F++ K+
Sbjct: 124 PSGAPVMGVGAQASGPLSFMDTWDAMCRTI-MSAGQRRGAMMGCLRIDHPDIEAFIDAKR 182
Query: 317 NHGKEEHRARDLFYALWVPDLFMERVQTNGQWSL 350
+ R R+ ++ V D FM ++ W+L
Sbjct: 183 DGA----RFRNFNLSVLVTDEFMAALEAGRDWTL 212
Score = 88 (36.0 bits), Expect = 9.5e-29, Sum P(3) = 9.5e-29
Identities = 26/89 (29%), Positives = 41/89 (46%)
Query: 378 GKAKKVVQAQNLWFEILTSQIETGTPYMLFKDTCNRKSNQQNLGTIKSSNLCTEIIEYTS 437
G+ + + A LW ++ + + P ++F D N +N ++ TI +SN C E +
Sbjct: 216 GQPYRSLPASGLWDRLMQATYDAAEPGVIFVDRVNALNNLADIETISASNPCGE--QMLP 273
Query: 438 PTETAVCNLASIALPRFVR---EKDVPVE 463
P C L SI L R V E D +E
Sbjct: 274 PY--GACLLGSINLARLVSSPFEADAKIE 300
>TIGR_CMR|SPO_3194 [details] [associations]
symbol:SPO_3194 "ribonucleoside-diphosphate reductase,
putative" species:246200 "Ruegeria pomeroyi DSS-3" [GO:0004748
"ribonucleoside-diphosphate reductase activity, thioredoxin
disulfide as acceptor" evidence=ISS] [GO:0009263
"deoxyribonucleotide biosynthetic process" evidence=ISS]
InterPro:IPR000788 InterPro:IPR013344 InterPro:IPR013509
Pfam:PF00317 Pfam:PF02867 PRINTS:PR01183 UniPathway:UPA00326
GO:GO:0005524 EMBL:CP000031 GenomeReviews:CP000031_GR GO:GO:0006260
GO:GO:0031419 KO:K00525 OMA:QMATFDI GO:GO:0005971 GO:GO:0004748
TIGRFAMs:TIGR02504 InterPro:IPR024434 Pfam:PF12637
HOGENOM:HOG000229278 RefSeq:YP_168397.1 ProteinModelPortal:Q5LNK9
GeneID:3192944 KEGG:sil:SPO3194 PATRIC:23379835
ProtClustDB:CLSK934086 Uniprot:Q5LNK9
Length = 760
Score = 186 (70.5 bits), Expect = 5.3e-28, Sum P(3) = 5.3e-28
Identities = 47/144 (32%), Positives = 73/144 (50%)
Query: 208 AGTPRP-QLSSCFLVCMKDDSIEGIYETLKECAVISKSAGGIGVSVHNIRATGSYIRGTN 266
AGT R L +CF++ DS+ GI+E LKE A+ + GGIG IR G+ ++G
Sbjct: 75 AGTARQVTLFNCFVMGTIPDSMGGIFEMLKEAALTMQQGGGIGYDFSTIRPRGADVKGVA 134
Query: 267 GTSNGIVPMLRVFNDTARYVDQGGGKRKGAFAVYLEPWHADIFEFLNLKKNHGKEEHRAR 326
++G + + V++ R + G R+GA + H DI +F+ K + R R
Sbjct: 135 ADASGPLSFMDVWDAMCRTI-MSAGSRRGAMMATMRCDHPDIEQFIGAKSDPA----RLR 189
Query: 327 DLFYALWVPDLFMERVQTNGQWSL 350
++ V D FME V+ +G W L
Sbjct: 190 MFNMSVLVTDAFMEAVKADGSWEL 213
Score = 173 (66.0 bits), Expect = 5.3e-28, Sum P(3) = 5.3e-28
Identities = 51/185 (27%), Positives = 91/185 (49%)
Query: 467 SRIVGSRGSKNRFFDFEKLAEVTAIVTENLNKIIDVNYYPV-ETARRSNLRHRPIGIGVQ 525
+R+V + D E L ++ A ++ ++D + +P+ E A + + R IG+GV
Sbjct: 287 ARLVSNPFEDAAELDPEALQKLVATAVRMMDNVVDASRFPLPEQAAEAQNKRR-IGLGVT 345
Query: 526 GLADTFILLGMAFESPEAQQLNKDIFETIYYHALKTSSEIAAKEGPYETYHNSPVSKGIL 585
GLAD ++LG+ + S EA + +D I A S E+A ++G + + ++ L
Sbjct: 346 GLADALLMLGLRYGSDEAAKQTEDWLHAIARAAYLASVELAKEKGAFPLFD----AEKYL 401
Query: 586 QPDMWNVIPSDRWDWGVLRDMISKNGVRNSLLVAPMPTASTSQILGN-NECFEPYTSNIY 644
+ D +R+ I +G+RN+LL + PT + S GN + EP + Y
Sbjct: 402 ASGTMRAMDED------VREAIRTHGIRNALLTSIAPTGTISLYAGNVSSGIEPVFAYAY 455
Query: 645 SRRVL 649
+R+VL
Sbjct: 456 TRKVL 460
Score = 89 (36.4 bits), Expect = 5.3e-28, Sum P(3) = 5.3e-28
Identities = 24/79 (30%), Positives = 39/79 (49%)
Query: 377 EGKAKKVVQAQNLWFEILTSQIETGTPYMLFKDTCNRKSNQQNLGTIKSSNLCTEIIEYT 436
+GK V+A+ LW +I+ + + P ++F D N +N + TI ++N C E +
Sbjct: 216 DGKVYHTVEARTLWNKIMQATYDYAEPGVIFIDRINAANNLNYVETIAATNPCGE--QPL 273
Query: 437 SPTETAVCNLASIALPRFV 455
P C L S+ L R V
Sbjct: 274 PPY--GACLLGSVNLARLV 290
>UNIPROTKB|O53767 [details] [associations]
symbol:nrdZ "Ribonucleoside-diphosphate reductase NrdZ"
species:1773 "Mycobacterium tuberculosis" [GO:0005618 "cell wall"
evidence=IDA] [GO:0005829 "cytosol" evidence=IDA] [GO:0005886
"plasma membrane" evidence=IDA] InterPro:IPR000788
InterPro:IPR008926 InterPro:IPR013344 InterPro:IPR013509
Pfam:PF00317 Pfam:PF02867 PRINTS:PR01183 PROSITE:PS00089
UniPathway:UPA00326 Pfam:PF03477 GO:GO:0005829 GO:GO:0005886
GO:GO:0005524 GO:GO:0005618 EMBL:AE000516 GenomeReviews:AE000516_GR
GenomeReviews:AL123456_GR GO:GO:0006260 EMBL:BX842573 GO:GO:0031419
InterPro:IPR005144 PROSITE:PS51161 PIR:A70933 RefSeq:NP_215084.1
RefSeq:NP_335005.1 RefSeq:YP_006513903.1 ProteinModelPortal:O53767
SMR:O53767 PRIDE:O53767 EnsemblBacteria:EBMYCT00000000981
EnsemblBacteria:EBMYCT00000071101 GeneID:13318445 GeneID:887666
GeneID:924988 KEGG:mtc:MT0596 KEGG:mtu:Rv0570 KEGG:mtv:RVBD_0570
PATRIC:18123012 TubercuList:Rv0570 eggNOG:COG0209
HOGENOM:HOG000229277 KO:K00525 OMA:QMATFDI ProtClustDB:CLSK790600
GO:GO:0005971 GO:GO:0004748 SUPFAM:SSF48168 TIGRFAMs:TIGR02504
Uniprot:O53767
Length = 692
Score = 215 (80.7 bits), Expect = 9.5e-27, Sum P(3) = 9.5e-27
Identities = 54/169 (31%), Positives = 86/169 (50%)
Query: 198 FTHASPTLFNAGTPRPQLSSCFLVCMKDDSIEGIYETLKECAVISKSAGGIGVSVHNIRA 257
F SPTL N+GT L+ CF++ + +DS++ I+ TL + A + ++ GG G + ++R
Sbjct: 173 FLPNSPTLMNSGTDLGLLAGCFVLPI-EDSLQSIFATLGQAAELQRAGGGTGYAFSHLRP 231
Query: 258 TGSYIRGTNGTSNGIVPMLRVFNDTARYVDQGGGKRKGAFAVYLEPWHADIFEFLNLKKN 317
G + T GT++G V LR+++ A V GG +R+GA L+ H DI +F+ K
Sbjct: 232 AGDRVASTGGTASGPVSFLRLYDSAAGVVSMGG-RRRGACMAVLDVSHPDICDFVTAKAE 290
Query: 318 HGKEEHRARDLFYALWVPDLFMERVQTNGQWSLFCPNEASGLADCWGAE 366
E ++ V D F+ V+ NG L P +A AE
Sbjct: 291 SPSELPHFN---LSVGVTDAFLRAVERNGLHRLVNPRTGKIVARMPAAE 336
Score = 132 (51.5 bits), Expect = 9.5e-27, Sum P(3) = 9.5e-27
Identities = 30/98 (30%), Positives = 50/98 (51%)
Query: 481 DFEKLAEVTAIVTENLNKIIDVNYYPVETARRSNLRHRPIGIGVQGLADTFILLGMAFES 540
D+++L EV + L+ +IDV+ YP + R IG+GV GLA+ LG+ ++S
Sbjct: 405 DWDRLEEVAGVAVRFLDDVIDVSRYPFPELGEAARATRKIGLGVMGLAELLAALGIPYDS 464
Query: 541 PEAQQLNKDIFETIYYHALKTSSEIAAKEGPYETYHNS 578
EA +L + I A S +A + G + + +S
Sbjct: 465 EEAVRLATRLMRRIQQAAHTASRRLAEERGAFPAFTDS 502
Score = 87 (35.7 bits), Expect = 4.9e-13, Sum P(3) = 4.9e-13
Identities = 32/107 (29%), Positives = 49/107 (45%)
Query: 354 NEASGLADCWGAEFEKLYTHY---EREGKAKKVVQAQNLWFEILTSQIETGTPYMLFKDT 410
N + G+ D + E+ H R GK + A L+ I + G P ++F DT
Sbjct: 299 NLSVGVTDAFLRAVERNGLHRLVNPRTGKIVARMPAAELFDAICKAAHAGGDPGLVFLDT 358
Query: 411 CNRKSNQQNLGTIKSSNLCTEIIEYTSPTETAVCNLASIALPRFVRE 457
NR + G I+++N C E+ P E+ CNL SI L R + +
Sbjct: 359 INRANPVPGRGRIEATNPCGEVP--LLPYES--CNLGSINLARMLAD 401
Score = 85 (35.0 bits), Expect = 9.5e-27, Sum P(3) = 9.5e-27
Identities = 32/142 (22%), Positives = 60/142 (42%)
Query: 613 RNSLLVAPMPTASTSQILGNNECFEPYTSNIYSRRVLSGEFVVVNKHLLHDLTEMGIWSP 672
RN+ + + PT + S I G EP + ++R ++ + VN + G +
Sbjct: 511 RNAQVTSVAPTGTISLIAGTTAGIEPMFAIAFTRAIVGRHLLEVNPCFDRLARDRGFYRD 570
Query: 673 TIKNKIIYDDGSVQKIPEIPEELKMIYKTVWEIK-QMTL-VDMAVDRGCYIDQSQSLNIH 730
+ +I G V+ P +P E++ + T EI Q L + AV R S+++N+
Sbjct: 571 ELIAEIA-QRGGVRGYPRLPAEVRAAFPTAAEIAPQWHLRMQAAVQRHVEAAVSKTVNLP 629
Query: 731 MDQPNFKKVTSLHFRTWSRGLK 752
V +++ W +K
Sbjct: 630 ATA-TVDDVRAIYVAAWKAKVK 650
>UNIPROTKB|E9PP77 [details] [associations]
symbol:RRM1 "Ribonucleoside-diphosphate reductase large
subunit" species:9606 "Homo sapiens" [GO:0004748
"ribonucleoside-diphosphate reductase activity, thioredoxin
disulfide as acceptor" evidence=IEA] [GO:0005971
"ribonucleoside-diphosphate reductase complex" evidence=IEA]
[GO:0006260 "DNA replication" evidence=IEA] InterPro:IPR000788
Pfam:PF02867 GO:GO:0006260 GO:GO:0005971 GO:GO:0004748
HGNC:HGNC:10451 ChiTaRS:RRM1 EMBL:AC015689 IPI:IPI00976088
ProteinModelPortal:E9PP77 SMR:E9PP77 Ensembl:ENST00000533495
ArrayExpress:E9PP77 Bgee:E9PP77 Uniprot:E9PP77
Length = 75
Score = 303 (111.7 bits), Expect = 6.5e-26, P = 6.5e-26
Identities = 58/70 (82%), Positives = 65/70 (92%)
Query: 223 MKDDSIEGIYETLKECAVISKSAGGIGVSVHNIRATGSYIRGTNGTSNGIVPMLRVFNDT 282
MKDDSIEGIY+TLK+CA+ISKSAGGIGV+V IRATGSYI GTNG SNG+VPMLRV+N+T
Sbjct: 1 MKDDSIEGIYDTLKQCALISKSAGGIGVAVSCIRATGSYIAGTNGNSNGLVPMLRVYNNT 60
Query: 283 ARYVDQGGGK 292
ARYVDQGG K
Sbjct: 61 ARYVDQGGNK 70
>TIGR_CMR|DET_0244 [details] [associations]
symbol:DET_0244 "ribonucleotide reductase" species:243164
"Dehalococcoides ethenogenes 195" [GO:0004748
"ribonucleoside-diphosphate reductase activity, thioredoxin
disulfide as acceptor" evidence=ISS] [GO:0009265
"2'-deoxyribonucleotide biosynthetic process" evidence=ISS]
InterPro:IPR000788 InterPro:IPR008926 InterPro:IPR013344
InterPro:IPR013509 Pfam:PF00317 Pfam:PF02867 PRINTS:PR01183
UniPathway:UPA00326 GO:GO:0005524 GO:GO:0006260 EMBL:CP000027
GenomeReviews:CP000027_GR GO:GO:0031419 eggNOG:COG0209
HOGENOM:HOG000229277 KO:K00525 GO:GO:0005971 GO:GO:0004748
SUPFAM:SSF48168 TIGRFAMs:TIGR02504 RefSeq:YP_180992.1
ProteinModelPortal:Q3Z9V7 STRING:Q3Z9V7 GeneID:3230414
KEGG:det:DET0244 PATRIC:21607559 OMA:SANFGIN ProtClustDB:CLSK741634
BioCyc:DETH243164:GJNF-244-MONOMER Uniprot:Q3Z9V7
Length = 585
Score = 170 (64.9 bits), Expect = 7.8e-26, Sum P(4) = 7.8e-26
Identities = 61/213 (28%), Positives = 99/213 (46%)
Query: 151 LERSYLLKV-QGKVVERPQHMLMRVS--IGIHKDDIDSAIKT-------YHMMSQRWFTH 200
LE+ YL + G + E + M RV+ + ++ + K Y MM+ F
Sbjct: 11 LEKRYLKRDGDGNIAESSEDMFRRVADTVAAAENAYNPPGKAACMAEEFYGMMTGFEFLP 70
Query: 201 ASPTLFNAGTPRPQLSSCFLVCMKDDSIEGIYETLKECAVISKSAGGIGVSVHNIRATGS 260
SPTL NAG LSSCF++ + D S+ GI + + E VI + GG G + IR
Sbjct: 71 NSPTLLNAGRELGLLSSCFVLPVAD-SVAGIAKAVGEAMVIHQYGGGTGFAFDAIRPEDD 129
Query: 261 YIRGTNGTSNGIVPMLRVFNDTARYVDQGGGKRKGAFAVYLEPWHADIFEFLNLKKNHGK 320
++ + + G V ++ VF++ Y+ Q G R G + L H DI +F+ K + G
Sbjct: 130 PVKSGHKVAGGPVRLVGVFSEAVNYIKQAG-VRCGCNSASLPVNHPDILKFIRAK-DEGS 187
Query: 321 EEHRARDLFYALWVPDLFMERVQTNGQWSLFCP 353
H A + + + D F+ +V+ + L P
Sbjct: 188 --HSA-NFGINIALTDDFIRKVRRGEDYELVNP 217
Score = 116 (45.9 bits), Expect = 7.8e-26, Sum P(4) = 7.8e-26
Identities = 25/98 (25%), Positives = 48/98 (48%)
Query: 481 DFEKLAEVTAIVTENLNKIIDVNYYPVETARRSNLRHRPIGIGVQGLADTFILLGMAFES 540
D+ +L + A L+ +++VN YP ++ R IG+G G A+ I LG+ ++S
Sbjct: 303 DYPRLGGLIAKAVRFLDDVLEVNRYPSAEVEKAARATRKIGLGFMGFAEMLIKLGIRYDS 362
Query: 541 PEAQQLNKDIFETIYYHALKTSSEIAAKEGPYETYHNS 578
EA ++ + A + + E+A + G + + S
Sbjct: 363 AEAVSAADELMAFVKEAACQATEELALERGAFPAFAGS 400
Score = 102 (41.0 bits), Expect = 7.8e-26, Sum P(4) = 7.8e-26
Identities = 35/143 (24%), Positives = 63/143 (44%)
Query: 613 RNSLLVAPMPTASTSQILGNNECFEPYTSNIYSRRVLSGEFVVVNKHLLHDLT-EMGIWS 671
RN+ + T +TS I + P S + R +L G+ ++ H + E G +S
Sbjct: 411 RNATCLTFTNTGTTSIIADTSVGIHPIYSLVMVRNILDGQRLLDINHAFEETARERGFFS 470
Query: 672 PTIKNKIIYDDGSVQKIPEIPEELKMIYKTVWEIKQMTLVDMAVDRGCYIDQ--SQSLNI 729
P + K++ + S PEIPE+ + + T +I+ + + Y D SQ++N
Sbjct: 471 PALIEKLLTGE-SPCNCPEIPEDYRRLLVTARDIQPEWCIRVQAAFQKYTDNAISQTVNF 529
Query: 730 HMDQPNFKKVTSLHFRTWSRGLK 752
D + + + L + GLK
Sbjct: 530 PADA-SVEDIADLFLKAHELGLK 551
Score = 76 (31.8 bits), Expect = 7.8e-26, Sum P(4) = 7.8e-26
Identities = 21/78 (26%), Positives = 38/78 (48%)
Query: 376 REGKAKKVVQAQNLWFEILTSQIETGTPYMLFKDTCNRKSNQQNLGTIKSSNLC--TEII 433
R G+ + A +++ I S ETG P ++F D N+ + LG +++ C ++
Sbjct: 218 RTGRVSGSLSAAEVFYRIARSSWETGDPGIMFIDRINKDNPTPRLGEFITTDPCGGQPLL 277
Query: 434 EYTSPTETAVCNLASIAL 451
Y S T + NL+ + L
Sbjct: 278 PYESATLGTI-NLSGMLL 294
>UNIPROTKB|Q5LRJ1 [details] [associations]
symbol:nrdJ "Ribonucleoside-diphosphate reductase,
adenosylcobalamin-dependent" species:246200 "Ruegeria pomeroyi
DSS-3" [GO:0009263 "deoxyribonucleotide biosynthetic process"
evidence=ISS] InterPro:IPR000788 InterPro:IPR013344
InterPro:IPR013678 Pfam:PF02867 Pfam:PF08471 GO:GO:0000166
EMBL:CP000031 GenomeReviews:CP000031_GR GO:GO:0006260 GO:GO:0050897
GO:GO:0031419 GO:GO:0009263 KO:K00525 GO:GO:0005971 GO:GO:0004748
TIGRFAMs:TIGR02504 Gene3D:1.10.10.200 InterPro:IPR017856
InterPro:IPR024434 Pfam:PF12637 RefSeq:YP_167364.1
ProteinModelPortal:Q5LRJ1 GeneID:3192806 KEGG:sil:SPO2136
PATRIC:23377617 HOGENOM:HOG000021770 OMA:FLWRSVP
ProtClustDB:PRK07562 Uniprot:Q5LRJ1
Length = 1214
Score = 131 (51.2 bits), Expect = 9.8e-10, Sum P(3) = 9.8e-10
Identities = 42/167 (25%), Positives = 74/167 (44%)
Query: 152 ERSYLLKVQGKVVERPQHMLMRVSIGIH-KDDIDSAIKTYHMMSQRWFTHASPTLFNAGT 210
E ++L Q PQ + G+H ID + +H + + T ++
Sbjct: 131 EMRFMLATQRAAPNSPQWF----NTGLHWAYGIDGPAQGHHYVD---YKTGKLTKSDSAY 183
Query: 211 PRPQLSSCFLVCMKDDSIE--GIYETLKECAVISKSAGGIGVSVHNIRATGSYIRGTNGT 268
PQ +CF+ + DD + GI + A + K G G + ++RA G + G G
Sbjct: 184 EHPQPHACFIQSVSDDLVNEGGIMDLWVREARLFKYGSGTGTNFSHLRAEGESLSG-GGK 242
Query: 269 SNGIVPMLRVFNDTARYVDQGGGKRKGAFAVYLEPWHADIFEFLNLK 315
S+G++ L++ + A + GG R+ A V ++ H DI +F+ K
Sbjct: 243 SSGLMGFLKIGDRAAGAIKSGGTTRRAAKMVIVDADHPDIEQFIQWK 289
Score = 111 (44.1 bits), Expect = 9.8e-10, Sum P(3) = 9.8e-10
Identities = 77/334 (23%), Positives = 136/334 (40%)
Query: 378 GKAKKVVQAQNLWFEILTSQIETGTPYMLFKDTCNRKSNQQNLGTIKSSNLCTEIIEYTS 437
GK K V+A++LW ++ + P + F DT N G I+ SN C+E Y
Sbjct: 417 GKVAKTVKARDLWEKVGHAAWACADPGIQFHDTVNDWHTCPADGPIRGSNPCSE---YMF 473
Query: 438 PTETAVCNLASIALPRFVREKDVPVES--HPSRI--VGSRGSKNRF-FDFEKLAEVT--- 489
+TA CNLAS+ L F+++ + E H +R+ + S F +++A+++
Sbjct: 474 LDDTA-CNLASMNLLTFLKDGEFQAEDYIHATRLWTLTLEISVTMAQFPSKEIAQLSYDF 532
Query: 490 ---AIVTENLNKII-DVNY-YPVETARR--SNLRHRPIGIGVQGLADTFILLGMAFESPE 542
+ N+ ++ ++ Y Y + R L G+ A+ LG F E
Sbjct: 533 RTLGLGYANIGGLLMNMGYGYDSDEGRALCGALTAIMTGVAYATSAEIAGELG-PFAGYE 591
Query: 543 AQQLNKDIFETIYYHALKTSSEIAAKEGPYETYHNSPVSKGILQ-PDMWNVIPSDRWDWG 601
N + I H +T++ K YE PV PD ++ W
Sbjct: 592 RNAAN--MLRVIRNH--RTAAY--GKANGYEQLSVKPVPLDHSNCPDP-RLVELAMASWD 644
Query: 602 VLRDMISKNGVRNSLLVAPMPTASTSQILG-NNECFEPYTSNIYSRRVLSGE-FVVVNKH 659
+ KNG RN+ PT + ++ + EP + + +++ G F ++N+
Sbjct: 645 EALSLGEKNGYRNAQSTVIAPTGTIGLVMDCDTTGIEPDFALVKFKKLAGGGYFKIINRS 704
Query: 660 LLHDLTEMGIWSPTIKNKIIY--DDGSVQKIPEI 691
+ L +G S I+ + Y G++ P I
Sbjct: 705 VPAALENLGYSSAQIEEIVSYAVGHGTIGNAPGI 738
Score = 38 (18.4 bits), Expect = 9.8e-10, Sum P(3) = 9.8e-10
Identities = 7/15 (46%), Positives = 9/15 (60%)
Query: 670 WSPTIKNKIIYDDGS 684
WS +K +Y DGS
Sbjct: 893 WSLGVKANALYRDGS 907
>TIGR_CMR|SPO_2136 [details] [associations]
symbol:SPO_2136 "ribonucleoside-diphosphate reductase,
adenosylcobalamin-dependent" species:246200 "Ruegeria pomeroyi
DSS-3" [GO:0004748 "ribonucleoside-diphosphate reductase activity,
thioredoxin disulfide as acceptor" evidence=ISS] [GO:0005971
"ribonucleoside-diphosphate reductase complex" evidence=ISS]
[GO:0009263 "deoxyribonucleotide biosynthetic process"
evidence=ISS] InterPro:IPR000788 InterPro:IPR013344
InterPro:IPR013678 Pfam:PF02867 Pfam:PF08471 GO:GO:0000166
EMBL:CP000031 GenomeReviews:CP000031_GR GO:GO:0006260 GO:GO:0050897
GO:GO:0031419 GO:GO:0009263 KO:K00525 GO:GO:0005971 GO:GO:0004748
TIGRFAMs:TIGR02504 Gene3D:1.10.10.200 InterPro:IPR017856
InterPro:IPR024434 Pfam:PF12637 RefSeq:YP_167364.1
ProteinModelPortal:Q5LRJ1 GeneID:3192806 KEGG:sil:SPO2136
PATRIC:23377617 HOGENOM:HOG000021770 OMA:FLWRSVP
ProtClustDB:PRK07562 Uniprot:Q5LRJ1
Length = 1214
Score = 131 (51.2 bits), Expect = 9.8e-10, Sum P(3) = 9.8e-10
Identities = 42/167 (25%), Positives = 74/167 (44%)
Query: 152 ERSYLLKVQGKVVERPQHMLMRVSIGIH-KDDIDSAIKTYHMMSQRWFTHASPTLFNAGT 210
E ++L Q PQ + G+H ID + +H + + T ++
Sbjct: 131 EMRFMLATQRAAPNSPQWF----NTGLHWAYGIDGPAQGHHYVD---YKTGKLTKSDSAY 183
Query: 211 PRPQLSSCFLVCMKDDSIE--GIYETLKECAVISKSAGGIGVSVHNIRATGSYIRGTNGT 268
PQ +CF+ + DD + GI + A + K G G + ++RA G + G G
Sbjct: 184 EHPQPHACFIQSVSDDLVNEGGIMDLWVREARLFKYGSGTGTNFSHLRAEGESLSG-GGK 242
Query: 269 SNGIVPMLRVFNDTARYVDQGGGKRKGAFAVYLEPWHADIFEFLNLK 315
S+G++ L++ + A + GG R+ A V ++ H DI +F+ K
Sbjct: 243 SSGLMGFLKIGDRAAGAIKSGGTTRRAAKMVIVDADHPDIEQFIQWK 289
Score = 111 (44.1 bits), Expect = 9.8e-10, Sum P(3) = 9.8e-10
Identities = 77/334 (23%), Positives = 136/334 (40%)
Query: 378 GKAKKVVQAQNLWFEILTSQIETGTPYMLFKDTCNRKSNQQNLGTIKSSNLCTEIIEYTS 437
GK K V+A++LW ++ + P + F DT N G I+ SN C+E Y
Sbjct: 417 GKVAKTVKARDLWEKVGHAAWACADPGIQFHDTVNDWHTCPADGPIRGSNPCSE---YMF 473
Query: 438 PTETAVCNLASIALPRFVREKDVPVES--HPSRI--VGSRGSKNRF-FDFEKLAEVT--- 489
+TA CNLAS+ L F+++ + E H +R+ + S F +++A+++
Sbjct: 474 LDDTA-CNLASMNLLTFLKDGEFQAEDYIHATRLWTLTLEISVTMAQFPSKEIAQLSYDF 532
Query: 490 ---AIVTENLNKII-DVNY-YPVETARR--SNLRHRPIGIGVQGLADTFILLGMAFESPE 542
+ N+ ++ ++ Y Y + R L G+ A+ LG F E
Sbjct: 533 RTLGLGYANIGGLLMNMGYGYDSDEGRALCGALTAIMTGVAYATSAEIAGELG-PFAGYE 591
Query: 543 AQQLNKDIFETIYYHALKTSSEIAAKEGPYETYHNSPVSKGILQ-PDMWNVIPSDRWDWG 601
N + I H +T++ K YE PV PD ++ W
Sbjct: 592 RNAAN--MLRVIRNH--RTAAY--GKANGYEQLSVKPVPLDHSNCPDP-RLVELAMASWD 644
Query: 602 VLRDMISKNGVRNSLLVAPMPTASTSQILG-NNECFEPYTSNIYSRRVLSGE-FVVVNKH 659
+ KNG RN+ PT + ++ + EP + + +++ G F ++N+
Sbjct: 645 EALSLGEKNGYRNAQSTVIAPTGTIGLVMDCDTTGIEPDFALVKFKKLAGGGYFKIINRS 704
Query: 660 LLHDLTEMGIWSPTIKNKIIY--DDGSVQKIPEI 691
+ L +G S I+ + Y G++ P I
Sbjct: 705 VPAALENLGYSSAQIEEIVSYAVGHGTIGNAPGI 738
Score = 38 (18.4 bits), Expect = 9.8e-10, Sum P(3) = 9.8e-10
Identities = 7/15 (46%), Positives = 9/15 (60%)
Query: 670 WSPTIKNKIIYDDGS 684
WS +K +Y DGS
Sbjct: 893 WSLGVKANALYRDGS 907
Parameters:
V=100
filter=SEG
E=0.001
ctxfactor=1.00
Query ----- As Used ----- ----- Computed ----
Frame MatID Matrix name Lambda K H Lambda K H
+0 0 BLOSUM62 0.318 0.134 0.400 same same same
Q=9,R=2 0.244 0.0300 0.180 n/a n/a n/a
Query
Frame MatID Length Eff.Length E S W T X E2 S2
+0 0 811 789 0.00095 121 3 11 22 0.39 34
37 0.45 37
Statistics:
Database: /share/blast/go-seqdb.fasta
Title: go_20130330-seqdb.fasta
Posted: 5:47:42 AM PDT Apr 1, 2013
Created: 5:47:42 AM PDT Apr 1, 2013
Format: XDF-1
# of letters in database: 169,044,731
# of sequences in database: 368,745
# of database sequences satisfying E: 62
No. of states in DFA: 630 (67 KB)
Total size of DFA: 426 KB (2204 KB)
Time to generate neighborhood: 0.00u 0.00s 0.00t Elapsed: 00:00:00
No. of threads or processors used: 24
Search cpu time: 65.26u 0.09s 65.35t Elapsed: 00:00:04
Total cpu time: 65.28u 0.09s 65.37t Elapsed: 00:00:04
Start: Mon May 20 16:02:01 2013 End: Mon May 20 16:02:05 2013