BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 003561
(811 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|3HNC|A Chain A, Crystal Structure Of Human Ribonucleotide Reductase 1
Bound To The Effector Ttp
pdb|3HNC|B Chain B, Crystal Structure Of Human Ribonucleotide Reductase 1
Bound To The Effector Ttp
pdb|3HND|A Chain A, Crystal Structure Of Human Ribonucleotide Reductase 1
Bound To The Effector Ttp And Substrate Gdp
pdb|3HND|B Chain B, Crystal Structure Of Human Ribonucleotide Reductase 1
Bound To The Effector Ttp And Substrate Gdp
pdb|3HNE|A Chain A, Crystal Structure Of Human Ribonucleotide Reductase 1
Bound To The Effectors Ttp And Atp
pdb|3HNE|B Chain B, Crystal Structure Of Human Ribonucleotide Reductase 1
Bound To The Effectors Ttp And Atp
pdb|3HNF|A Chain A, Crystal Structure Of Human Ribonucleotide Reductase 1
Bound To The Effectors Ttp And Datp
pdb|3HNF|B Chain B, Crystal Structure Of Human Ribonucleotide Reductase 1
Bound To The Effectors Ttp And Datp
Length = 792
Score = 1088 bits (2814), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 520/811 (64%), Positives = 630/811 (77%), Gaps = 19/811 (2%)
Query: 1 MYVVKRDGRQEAVHFDKITARLKKLSYGLSTEHCDPVLVSQKVCAGVYKGVTTSQLDELX 60
M+V+KRDGRQE V FDKIT+R++KL YGL+ + DP ++ KV G+Y GVTT +LD L
Sbjct: 1 MHVIKRDGRQERVMFDKITSRIQKLCYGLNMDFVDPAQITMKVIQGLYSGVTTVELDTLA 60
Query: 61 XXXXXXXXXNHPDYASLAARIAVSNLHKNTKKSFSETIKDMYNHYNERSGLKAPLIADDI 120
HPDYA LAARIAVSNLHK TKK FS+ ++D+YN+ N +G +P++A
Sbjct: 61 AETAATLTTKHPDYAILAARIAVSNLHKETKKVFSDVMEDLYNYINPHNGKHSPMVAKST 120
Query: 121 YEIIMKNAACLDSEIIXXXXXXXXXXXXKTLERSYLLKVQGKVVERPQHMLMRVSIGIHK 180
+I++ N L+S II KTLERSYLLK+ GKV ERPQHMLMRVS+GIHK
Sbjct: 121 LDIVLANKDRLNSAIIYDRDFSYNYFGFKTLERSYLLKINGKVAERPQHMLMRVSVGIHK 180
Query: 181 DDIDSAIKTYHMMSQRWFTHASPTLFNAGTPRPQLSSCFLVCMKDDSIEGIYETLKECAV 240
+DID+AI+TY+++S+RWFTHASPTLFNAGT RPQLSSCFL+ MKDDSIEGIY+TLK+CA+
Sbjct: 181 EDIDAAIETYNLLSERWFTHASPTLFNAGTNRPQLSSCFLLSMKDDSIEGIYDTLKQCAL 240
Query: 241 ISKSAGGIGVSVHNIRATGSYIRGTNGTSNGIVPMLRVFNDTARYVDQGGGKRKGAFAVY 300
ISKSAGGIGV+V IRATGSYI GTNG SNG+VPMLRV+N+TARYVDQGG KR GAFA+Y
Sbjct: 241 ISKSAGGIGVAVSCIRATGSYIAGTNGNSNGLVPMLRVYNNTARYVDQGGNKRPGAFAIY 300
Query: 301 LEPWHADIFEFLNLKKNHGKEEHRARDLFYALWVPDLFMERVQTNGQWSLFCPNEASGLA 360
LEPWH DIFEFL+LKKN GKEE RARDLF+ALW+PDLFM+RV+TN WSL CPNE GL
Sbjct: 301 LEPWHLDIFEFLDLKKNTGKEEQRARDLFFALWIPDLFMKRVETNQDWSLMCPNECPGLD 360
Query: 361 DCWGAEFEKLYTHYEREGKAKKVVQAQNLWFEILTSQIETGTPYMLFKDTCNRKSNQQNL 420
+ WG EFEKLY YE++G+ +KVV+AQ LW+ I+ SQ ETGTPYML+KD+CNRKSNQQNL
Sbjct: 361 EVWGEEFEKLYASYEKQGRVRKVVKAQQLWYAIIESQTETGTPYMLYKDSCNRKSNQQNL 420
Query: 421 GTIKSSNLCTEIIEYTSPTETAVCNLASIALPRFVREKDVPVESHPSRIVGSRGSKNRFF 480
GTIK SNLCTEI+EYTS E AVCNLAS+AL +V + +
Sbjct: 421 GTIKCSNLCTEIVEYTSKDEVAVCNLASLALNMYV-------------------TSEHTY 461
Query: 481 DFEKLAEVTAIVTENLNKIIDVNYYPVETARRSNLRHRPIGIGVQGLADTFILLGMAFES 540
DF+KLAEVT +V NLNKIID+NYYPV A SN RHRPIGIGVQGLAD FIL+ FES
Sbjct: 462 DFKKLAEVTKVVVRNLNKIIDINYYPVPEACLSNKRHRPIGIGVQGLADAFILMRYPFES 521
Query: 541 PEAQQLNKDIFETIYYHALKTSSEIAAKEGPYETYHNSPVSKGILQPDMWNVIPSDRWDW 600
EAQ LNK IFETIYY AL+ S ++A ++GPYETY SPVSKGILQ DMWNV P+D WDW
Sbjct: 522 AEAQLLNKQIFETIYYGALEASCDLAKEQGPYETYEGSPVSKGILQYDMWNVTPTDLWDW 581
Query: 601 GVLRDMISKNGVRNSLLVAPMPTASTSQILGNNECFEPYTSNIYSRRVLSGEFVVVNKHL 660
VL++ I+K G+RNSLL+APMPTAST+QILGNNE EPYTSNIY+RRVLSGEF +VN HL
Sbjct: 582 KVLKEKIAKYGIRNSLLIAPMPTASTAQILGNNESIEPYTSNIYTRRVLSGEFQIVNPHL 641
Query: 661 LHDLTEMGIWSPTIKNKIIYDDGSVQKIPEIPEELKMIYKTVWEIKQMTLVDMAVDRGCY 720
L DLTE G+W +KN+II +GS+Q IPEIP++LK +YKTVWEI Q T++ MA +RG +
Sbjct: 642 LKDLTERGLWHEEMKNQIIACNGSIQSIPEIPDDLKQLYKTVWEISQKTVLKMAAERGAF 701
Query: 721 IDQSQSLNIHMDQPNFKKVTSLHFRTWSRGLKTGMYYLRSRAAADAIKFTVDTSVFKEKP 780
IDQSQSLNIH+ +PN+ K+TS+HF W +GLKTGMYYLR+R AA+ I+FT++ K+K
Sbjct: 702 IDQSQSLNIHIAEPNYGKLTSMHFYGWKQGLKTGMYYLRTRPAANPIQFTLNKEKLKDKE 761
Query: 781 EKPELVVDDETKMAQVVCSLTNREECMACGS 811
+ + + E A +VCSL NR+EC+ CGS
Sbjct: 762 KVSKEEEEKERNTAAMVCSLENRDECLMCGS 792
>pdb|1ZYZ|A Chain A, Structures Of Yeast Ribonucloetide Reductase I
pdb|1ZYZ|B Chain B, Structures Of Yeast Ribonucloetide Reductase I
pdb|1ZZD|A Chain A, Structures Of Yeast Ribonucleotide Reductase I
pdb|2CVS|A Chain A, Structures Of Yeast Ribonucleotide Reductase I
pdb|2CVT|A Chain A, Structures Of Yeast Ribonucleotide Reductase I
pdb|2CVU|A Chain A, Structures Of Yeast Ribonucleotide Reductase I
pdb|2CVV|A Chain A, Structures Of Yeast Ribonucleotide Reductase I
pdb|2CVW|A Chain A, Structures Of Yeast Ribonucleotide Reductase I
pdb|2CVX|A Chain A, Structures Of Yeast Ribonucleotide Reductase I
pdb|2CVY|A Chain A, Structures Of Yeast Ribonucleotide Reductase I
pdb|2EUD|A Chain A, Structures Of Yeast Ribonucleotide Reductase I Complexed
With Ligands And Subunit Peptides
pdb|2ZLF|A Chain A, The Structural Basis For Peptidomimetic Inhibition Of
Eukaryotic Ribonucleotide Reductase
pdb|2ZLG|A Chain A, The Structual Basis For Peptidomimetic Inhibition Of
Eukaryotic Ribonucleotide Reductase
pdb|3K8T|A Chain A, Structure Of Eukaryotic Rnr Large Subunit R1 Complexed
With Designed Adp Analog Compound
pdb|3PAW|A Chain A, Low Resolution X-Ray Crystal Structure Of Yeast Rnr1p With
Datp Bound In The A-Site
pdb|3PAW|B Chain B, Low Resolution X-Ray Crystal Structure Of Yeast Rnr1p With
Datp Bound In The A-Site
pdb|3PAW|C Chain C, Low Resolution X-Ray Crystal Structure Of Yeast Rnr1p With
Datp Bound In The A-Site
pdb|3PAW|D Chain D, Low Resolution X-Ray Crystal Structure Of Yeast Rnr1p With
Datp Bound In The A-Site
pdb|3S87|A Chain A, Structure Of Yeast Ribonucleotide Reductase 1 With Dgtp
And Adp
pdb|3S8B|A Chain A, Structure Of Yeast Ribonucleotide Reductase 1 With Amppnp
And Cdp
pdb|3RSR|A Chain A, Crystal Structure Of 5-Nitp Inhibition Of Yeast
Ribonucleotide Reductase
Length = 888
Score = 1031 bits (2665), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 472/781 (60%), Positives = 605/781 (77%), Gaps = 15/781 (1%)
Query: 1 MYVVKRDGRQEAVHFDKITARLKKLSYGLSTEHCDPVLVSQKVCAGVYKGVTTSQLDELX 60
MYV KRDGR+E V FDKITAR+ +L YGL +H D V V+Q++ +GVY+GVTT +LD L
Sbjct: 1 MYVYKRDGRKEPVQFDKITARISRLCYGLDPKHIDAVKVTQRIISGVYEGVTTIELDNLA 60
Query: 61 XXXXXXXXXNHPDYASLAARIAVSNLHKNTKKSFSETIKDMYNHYNERSGLKAPLIADDI 120
HPDYA+LAARIA+SNLHK T K FS+ ++D+Y + N +G AP+I+DD+
Sbjct: 61 AETCAYMTTVHPDYATLAARIAISNLHKQTTKQFSKVVEDLYRYVNAATGKPAPMISDDV 120
Query: 121 YEIIMKNAACLDSEIIXXXXXXXXXXXXKTLERSYLLKVQGKVVERPQHMLMRVSIGIHK 180
Y I+M+N L+S I+ KTLERSYLL++ G+V ERPQH++MRV++GIH
Sbjct: 121 YNIVMENKDKLNSAIVYDRDFQYSYFGFKTLERSYLLRINGQVAERPQHLIMRVALGIHG 180
Query: 181 DDIDSAIKTYHMMSQRWFTHASPTLFNAGTPRPQLSSCFLVCMKDDSIEGIYETLKECAV 240
DI++A++TY++MS ++FTHASPTLFNAGTP+PQ+SSCFLV MK+DSIEGIY+TLKECA+
Sbjct: 181 RDIEAALETYNLMSLKYFTHASPTLFNAGTPKPQMSSCFLVAMKEDSIEGIYDTLKECAL 240
Query: 241 ISKSAGGIGVSVHNIRATGSYIRGTNGTSNGIVPMLRVFNDTARYVDQGGGKRKGAFAVY 300
ISK+AGGIG+ +HNIR+TGSYI GTNGTSNG++PM+RVFN+TARYVDQGG KR GAFA+Y
Sbjct: 241 ISKTAGGIGLHIHNIRSTGSYIAGTNGTSNGLIPMIRVFNNTARYVDQGGNKRPGAFALY 300
Query: 301 LEPWHADIFEFLNLKKNHGKEEHRARDLFYALWVPDLFMERVQTNGQWSLFCPNEASGLA 360
LEPWHADIF+F++++KNHGKEE RARDLF ALW+PDLFM+RV+ NG W+LF P A GL+
Sbjct: 301 LEPWHADIFDFIDIRKNHGKEEIRARDLFPALWIPDLFMKRVEENGTWTLFSPTSAPGLS 360
Query: 361 DCWGAEFEKLYTHYEREGKAKKVVQAQNLWFEILTSQIETGTPYMLFKDTCNRKSNQQNL 420
DC+G EFE LYT YE+EG+ K ++AQ LW+ IL +Q ETGTP++++KD CNRKSNQ+NL
Sbjct: 361 DCYGDEFEALYTRYEKEGRG-KTIKAQKLWYSILEAQTETGTPFVVYKDACNRKSNQKNL 419
Query: 421 GTIKSSNLCTEIIEYTSPTETAVCNLASIALPRFVREKDVPVESHPSRIVGSRGSKNRFF 480
G IKSSNLC EI+EY++P ETAVCNLAS+ALP F+ S K +
Sbjct: 420 GVIKSSNLCCEIVEYSAPDETAVCNLASVALPAFIET--------------SEDGKTSTY 465
Query: 481 DFEKLAEVTAIVTENLNKIIDVNYYPVETARRSNLRHRPIGIGVQGLADTFILLGMAFES 540
+F+KL E+ +VT NLN++ID NYYPVE AR+SN+RHRPI +GVQGLADTF+LL + F+S
Sbjct: 466 NFKKLHEIAKVVTRNLNRVIDRNYYPVEEARKSNMRHRPIALGVQGLADTFMLLRLPFDS 525
Query: 541 PEAQQLNKDIFETIYYHALKTSSEIAAKEGPYETYHNSPVSKGILQPDMWNVIPSDRWDW 600
EA+ LN IFETIY+ +++ S E+A K+GPYET+ SP S+GILQ DMW+ P WDW
Sbjct: 526 EEARLLNIQIFETIYHASMEASCELAQKDGPYETFQGSPASQGILQFDMWDQKPYGMWDW 585
Query: 601 GVLRDMISKNGVRNSLLVAPMPTASTSQILGNNECFEPYTSNIYSRRVLSGEFVVVNKHL 660
LR I K+GVRNSL +APMPTASTSQILG NECFEP TSN+YSRRVLSGEF VVN +L
Sbjct: 586 DTLRKDIMKHGVRNSLTMAPMPTASTSQILGYNECFEPVTSNMYSRRVLSGEFQVVNPYL 645
Query: 661 LHDLTEMGIWSPTIKNKIIYDDGSVQKIPEIPEELKMIYKTVWEIKQMTLVDMAVDRGCY 720
L DL ++GIW +K +I +GS+Q +P +P+ELK +YKTVWEI Q T+++MA DR Y
Sbjct: 646 LRDLVDLGIWDEGMKQYLITQNGSIQGLPNVPQELKDLYKTVWEISQKTIINMAADRSVY 705
Query: 721 IDQSQSLNIHMDQPNFKKVTSLHFRTWSRGLKTGMYYLRSRAAADAIKFTVDTSVFKEKP 780
IDQS SLN+ + P K+TS+HF W +GLKTGMYYLR++AA+ AI+FT+D + +
Sbjct: 706 IDQSHSLNLFLRAPTMGKLTSMHFYGWKKGLKTGMYYLRTQAASAAIQFTIDQKIADQAT 765
Query: 781 E 781
E
Sbjct: 766 E 766
>pdb|3TB9|A Chain A, Structure Of Yeast Ribonucleotide Reductase 1 Q288a With
Amppnp And Cdp
pdb|3TBA|A Chain A, Structure Of Yeast Ribonucleotide Reductase 1 Q288a With
Dgtp And Adp
Length = 888
Score = 1028 bits (2658), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 471/781 (60%), Positives = 604/781 (77%), Gaps = 15/781 (1%)
Query: 1 MYVVKRDGRQEAVHFDKITARLKKLSYGLSTEHCDPVLVSQKVCAGVYKGVTTSQLDELX 60
MYV KRDGR+E V FDKITAR+ +L YGL +H D V V+Q++ +GVY+GVTT +LD L
Sbjct: 1 MYVYKRDGRKEPVQFDKITARISRLCYGLDPKHIDAVKVTQRIISGVYEGVTTIELDNLA 60
Query: 61 XXXXXXXXXNHPDYASLAARIAVSNLHKNTKKSFSETIKDMYNHYNERSGLKAPLIADDI 120
HPDYA+LAARIA+SNLHK T K FS+ ++D+Y + N +G AP+I+DD+
Sbjct: 61 AETCAYMTTVHPDYATLAARIAISNLHKQTTKQFSKVVEDLYRYVNAATGKPAPMISDDV 120
Query: 121 YEIIMKNAACLDSEIIXXXXXXXXXXXXKTLERSYLLKVQGKVVERPQHMLMRVSIGIHK 180
Y I+M+N L+S I+ KTLERSYLL++ G+V ERPQH++MRV++GIH
Sbjct: 121 YNIVMENKDKLNSAIVYDRDFQYSYFGFKTLERSYLLRINGQVAERPQHLIMRVALGIHG 180
Query: 181 DDIDSAIKTYHMMSQRWFTHASPTLFNAGTPRPQLSSCFLVCMKDDSIEGIYETLKECAV 240
DI++A++TY++MS ++FTHASPTLFNAGTP+PQ+SSCFLV MK+DSIEGIY+TLKECA+
Sbjct: 181 RDIEAALETYNLMSLKYFTHASPTLFNAGTPKPQMSSCFLVAMKEDSIEGIYDTLKECAL 240
Query: 241 ISKSAGGIGVSVHNIRATGSYIRGTNGTSNGIVPMLRVFNDTARYVDQGGGKRKGAFAVY 300
ISK+AGGIG+ +HNIR+TGSYI GTNGTSNG++PM+RVFN+TARYVD GG KR GAFA+Y
Sbjct: 241 ISKTAGGIGLHIHNIRSTGSYIAGTNGTSNGLIPMIRVFNNTARYVDAGGNKRPGAFALY 300
Query: 301 LEPWHADIFEFLNLKKNHGKEEHRARDLFYALWVPDLFMERVQTNGQWSLFCPNEASGLA 360
LEPWHADIF+F++++KNHGKEE RARDLF ALW+PDLFM+RV+ NG W+LF P A GL+
Sbjct: 301 LEPWHADIFDFIDIRKNHGKEEIRARDLFPALWIPDLFMKRVEENGTWTLFSPTSAPGLS 360
Query: 361 DCWGAEFEKLYTHYEREGKAKKVVQAQNLWFEILTSQIETGTPYMLFKDTCNRKSNQQNL 420
DC+G EFE LYT YE+EG+ K ++AQ LW+ IL +Q ETGTP++++KD CNRKSNQ+NL
Sbjct: 361 DCYGDEFEALYTRYEKEGRG-KTIKAQKLWYSILEAQTETGTPFVVYKDACNRKSNQKNL 419
Query: 421 GTIKSSNLCTEIIEYTSPTETAVCNLASIALPRFVREKDVPVESHPSRIVGSRGSKNRFF 480
G IKSSNLC EI+EY++P ETAVCNLAS+ALP F+ S K +
Sbjct: 420 GVIKSSNLCCEIVEYSAPDETAVCNLASVALPAFIET--------------SEDGKTSTY 465
Query: 481 DFEKLAEVTAIVTENLNKIIDVNYYPVETARRSNLRHRPIGIGVQGLADTFILLGMAFES 540
+F+KL E+ +VT NLN++ID NYYPVE AR+SN+RHRPI +GVQGLADTF+LL + F+S
Sbjct: 466 NFKKLHEIAKVVTRNLNRVIDRNYYPVEEARKSNMRHRPIALGVQGLADTFMLLRLPFDS 525
Query: 541 PEAQQLNKDIFETIYYHALKTSSEIAAKEGPYETYHNSPVSKGILQPDMWNVIPSDRWDW 600
EA+ LN IFETIY+ +++ S E+A K+GPYET+ SP S+GILQ DMW+ P WDW
Sbjct: 526 EEARLLNIQIFETIYHASMEASCELAQKDGPYETFQGSPASQGILQFDMWDQKPYGMWDW 585
Query: 601 GVLRDMISKNGVRNSLLVAPMPTASTSQILGNNECFEPYTSNIYSRRVLSGEFVVVNKHL 660
LR I K+GVRNSL +APMPTASTSQILG NECFEP TSN+YSRRVLSGEF VVN +L
Sbjct: 586 DTLRKDIMKHGVRNSLTMAPMPTASTSQILGYNECFEPVTSNMYSRRVLSGEFQVVNPYL 645
Query: 661 LHDLTEMGIWSPTIKNKIIYDDGSVQKIPEIPEELKMIYKTVWEIKQMTLVDMAVDRGCY 720
L DL ++GIW +K +I +GS+Q +P +P+ELK +YKTVWEI Q T+++MA DR Y
Sbjct: 646 LRDLVDLGIWDEGMKQYLITQNGSIQGLPNVPQELKDLYKTVWEISQKTIINMAADRSVY 705
Query: 721 IDQSQSLNIHMDQPNFKKVTSLHFRTWSRGLKTGMYYLRSRAAADAIKFTVDTSVFKEKP 780
IDQS SLN+ + P K+TS+HF W +GLKTGMYYLR++AA+ AI+FT+D + +
Sbjct: 706 IDQSHSLNLFLRAPTMGKLTSMHFYGWKKGLKTGMYYLRTQAASAAIQFTIDQKIADQAT 765
Query: 781 E 781
E
Sbjct: 766 E 766
>pdb|3S8A|A Chain A, Structure Of Yeast Ribonucleotide Reductase R293a With
Dgtp
pdb|3S8C|A Chain A, Structure Of Yeast Ribonucleotide Reductase 1 R293a With
Amppnp And Cdp
Length = 888
Score = 1028 bits (2657), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 471/781 (60%), Positives = 604/781 (77%), Gaps = 15/781 (1%)
Query: 1 MYVVKRDGRQEAVHFDKITARLKKLSYGLSTEHCDPVLVSQKVCAGVYKGVTTSQLDELX 60
MYV KRDGR+E V FDKITAR+ +L YGL +H D V V+Q++ +GVY+GVTT +LD L
Sbjct: 1 MYVYKRDGRKEPVQFDKITARISRLCYGLDPKHIDAVKVTQRIISGVYEGVTTIELDNLA 60
Query: 61 XXXXXXXXXNHPDYASLAARIAVSNLHKNTKKSFSETIKDMYNHYNERSGLKAPLIADDI 120
HPDYA+LAARIA+SNLHK T K FS+ ++D+Y + N +G AP+I+DD+
Sbjct: 61 AETCAYMTTVHPDYATLAARIAISNLHKQTTKQFSKVVEDLYRYVNAATGKPAPMISDDV 120
Query: 121 YEIIMKNAACLDSEIIXXXXXXXXXXXXKTLERSYLLKVQGKVVERPQHMLMRVSIGIHK 180
Y I+M+N L+S I+ KTLERSYLL++ G+V ERPQH++MRV++GIH
Sbjct: 121 YNIVMENKDKLNSAIVYDRDFQYSYFGFKTLERSYLLRINGQVAERPQHLIMRVALGIHG 180
Query: 181 DDIDSAIKTYHMMSQRWFTHASPTLFNAGTPRPQLSSCFLVCMKDDSIEGIYETLKECAV 240
DI++A++TY++MS ++FTHASPTLFNAGTP+PQ+SSCFLV MK+DSIEGIY+TLKECA+
Sbjct: 181 RDIEAALETYNLMSLKYFTHASPTLFNAGTPKPQMSSCFLVAMKEDSIEGIYDTLKECAL 240
Query: 241 ISKSAGGIGVSVHNIRATGSYIRGTNGTSNGIVPMLRVFNDTARYVDQGGGKRKGAFAVY 300
ISK+AGGIG+ +HNIR+TGSYI GTNGTSNG++PM+RVFN+TARYVDQGG K GAFA+Y
Sbjct: 241 ISKTAGGIGLHIHNIRSTGSYIAGTNGTSNGLIPMIRVFNNTARYVDQGGNKAPGAFALY 300
Query: 301 LEPWHADIFEFLNLKKNHGKEEHRARDLFYALWVPDLFMERVQTNGQWSLFCPNEASGLA 360
LEPWHADIF+F++++KNHGKEE RARDLF ALW+PDLFM+RV+ NG W+LF P A GL+
Sbjct: 301 LEPWHADIFDFIDIRKNHGKEEIRARDLFPALWIPDLFMKRVEENGTWTLFSPTSAPGLS 360
Query: 361 DCWGAEFEKLYTHYEREGKAKKVVQAQNLWFEILTSQIETGTPYMLFKDTCNRKSNQQNL 420
DC+G EFE LYT YE+EG+ K ++AQ LW+ IL +Q ETGTP++++KD CNRKSNQ+NL
Sbjct: 361 DCYGDEFEALYTRYEKEGRG-KTIKAQKLWYSILEAQTETGTPFVVYKDACNRKSNQKNL 419
Query: 421 GTIKSSNLCTEIIEYTSPTETAVCNLASIALPRFVREKDVPVESHPSRIVGSRGSKNRFF 480
G IKSSNLC EI+EY++P ETAVCNLAS+ALP F+ S K +
Sbjct: 420 GVIKSSNLCCEIVEYSAPDETAVCNLASVALPAFIET--------------SEDGKTSTY 465
Query: 481 DFEKLAEVTAIVTENLNKIIDVNYYPVETARRSNLRHRPIGIGVQGLADTFILLGMAFES 540
+F+KL E+ +VT NLN++ID NYYPVE AR+SN+RHRPI +GVQGLADTF+LL + F+S
Sbjct: 466 NFKKLHEIAKVVTRNLNRVIDRNYYPVEEARKSNMRHRPIALGVQGLADTFMLLRLPFDS 525
Query: 541 PEAQQLNKDIFETIYYHALKTSSEIAAKEGPYETYHNSPVSKGILQPDMWNVIPSDRWDW 600
EA+ LN IFETIY+ +++ S E+A K+GPYET+ SP S+GILQ DMW+ P WDW
Sbjct: 526 EEARLLNIQIFETIYHASMEASCELAQKDGPYETFQGSPASQGILQFDMWDQKPYGMWDW 585
Query: 601 GVLRDMISKNGVRNSLLVAPMPTASTSQILGNNECFEPYTSNIYSRRVLSGEFVVVNKHL 660
LR I K+GVRNSL +APMPTASTSQILG NECFEP TSN+YSRRVLSGEF VVN +L
Sbjct: 586 DTLRKDIMKHGVRNSLTMAPMPTASTSQILGYNECFEPVTSNMYSRRVLSGEFQVVNPYL 645
Query: 661 LHDLTEMGIWSPTIKNKIIYDDGSVQKIPEIPEELKMIYKTVWEIKQMTLVDMAVDRGCY 720
L DL ++GIW +K +I +GS+Q +P +P+ELK +YKTVWEI Q T+++MA DR Y
Sbjct: 646 LRDLVDLGIWDEGMKQYLITQNGSIQGLPNVPQELKDLYKTVWEISQKTIINMAADRSVY 705
Query: 721 IDQSQSLNIHMDQPNFKKVTSLHFRTWSRGLKTGMYYLRSRAAADAIKFTVDTSVFKEKP 780
IDQS SLN+ + P K+TS+HF W +GLKTGMYYLR++AA+ AI+FT+D + +
Sbjct: 706 IDQSHSLNLFLRAPTMGKLTSMHFYGWKKGLKTGMYYLRTQAASAAIQFTIDQKIADQAT 765
Query: 781 E 781
E
Sbjct: 766 E 766
>pdb|2WGH|A Chain A, Human Ribonucleotide Reductase R1 Subunit (Rrm1) In
Complex With Datp And Mg.
pdb|2WGH|B Chain B, Human Ribonucleotide Reductase R1 Subunit (Rrm1) In
Complex With Datp And Mg
Length = 676
Score = 982 bits (2538), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 463/688 (67%), Positives = 551/688 (80%), Gaps = 19/688 (2%)
Query: 75 ASLAARIAVSNLHKNTKKSFSETIKDMYNHYNERSGLKAPLIADDIYEIIMKNAACLDSE 134
A LAARIAVSNLHK TKK FS+ ++D+YN+ N +G +P++A +I++ N L+S
Sbjct: 2 AILAARIAVSNLHKETKKVFSDVMEDLYNYINPHNGKHSPMVAKSTLDIVLANKDRLNSA 61
Query: 135 IIXXXXXXXXXXXXKTLERSYLLKVQGKVVERPQHMLMRVSIGIHKDDIDSAIKTYHMMS 194
II KTLERSYLLK+ GKV ERPQHMLMRVS+GIHK+DID+AI+TY+++S
Sbjct: 62 IIYDRDFSYNYFGFKTLERSYLLKINGKVAERPQHMLMRVSVGIHKEDIDAAIETYNLLS 121
Query: 195 QRWFTHASPTLFNAGTPRPQLSSCFLVCMKDDSIEGIYETLKECAVISKSAGGIGVSVHN 254
+RWFTHASPTLFNAGT RPQLSSCFL+ MKDDSIEGIY+TLK+CA+ISKSAGGIGV+V
Sbjct: 122 ERWFTHASPTLFNAGTNRPQLSSCFLLSMKDDSIEGIYDTLKQCALISKSAGGIGVAVSC 181
Query: 255 IRATGSYIRGTNGTSNGIVPMLRVFNDTARYVDQGGGKRKGAFAVYLEPWHADIFEFLNL 314
IRATGSYI GTNG SNG+VPMLRV+N+TARYVDQGG KR GAFA+YLEPWH DIFEFL+L
Sbjct: 182 IRATGSYIAGTNGNSNGLVPMLRVYNNTARYVDQGGNKRPGAFAIYLEPWHLDIFEFLDL 241
Query: 315 KKNHGKEEHRARDLFYALWVPDLFMERVQTNGQWSLFCPNEASGLADCWGAEFEKLYTHY 374
KKN GKEE RARDLF+ALW+PDLFM+RV+TN WSL CPNE GL + WG EFEKLY Y
Sbjct: 242 KKNTGKEEQRARDLFFALWIPDLFMKRVETNQDWSLMCPNECPGLDEVWGEEFEKLYASY 301
Query: 375 EREGKAKKVVQAQNLWFEILTSQIETGTPYMLFKDTCNRKSNQQNLGTIKSSNLCTEIIE 434
E++G+ +KVV+AQ LW+ I+ SQ ETGTPYML+KD+CNRKSNQQNLGTIK SNLCTEI+E
Sbjct: 302 EKQGRVRKVVKAQQLWYAIIESQTETGTPYMLYKDSCNRKSNQQNLGTIKCSNLCTEIVE 361
Query: 435 YTSPTETAVCNLASIALPRFVREKDVPVESHPSRIVGSRGSKNRFFDFEKLAEVTAIVTE 494
YTS E AVCNLAS+AL +V + +DF+KLAEVT +V
Sbjct: 362 YTSKDEVAVCNLASLALNMYVTSEHT-------------------YDFKKLAEVTKVVVR 402
Query: 495 NLNKIIDVNYYPVETARRSNLRHRPIGIGVQGLADTFILLGMAFESPEAQQLNKDIFETI 554
NLNKIID+NYYPV A SN RHRPIGIGVQGLAD FIL+ FES EAQ LNK IFETI
Sbjct: 403 NLNKIIDINYYPVPEACLSNKRHRPIGIGVQGLADAFILMRYPFESAEAQLLNKQIFETI 462
Query: 555 YYHALKTSSEIAAKEGPYETYHNSPVSKGILQPDMWNVIPSDRWDWGVLRDMISKNGVRN 614
YY AL+ S ++A ++GPYETY SPVSKGILQ DMWNV P+D WDW VL++ I+K G+RN
Sbjct: 463 YYGALEASCDLAKEQGPYETYEGSPVSKGILQYDMWNVTPTDLWDWKVLKEKIAKYGIRN 522
Query: 615 SLLVAPMPTASTSQILGNNECFEPYTSNIYSRRVLSGEFVVVNKHLLHDLTEMGIWSPTI 674
SLL+APMPTAST+QILGNNE EPYTSNIY+RRVLSGEF +VN HLL DLTE G+W +
Sbjct: 523 SLLIAPMPTASTAQILGNNESIEPYTSNIYTRRVLSGEFQIVNPHLLKDLTERGLWHEEM 582
Query: 675 KNKIIYDDGSVQKIPEIPEELKMIYKTVWEIKQMTLVDMAVDRGCYIDQSQSLNIHMDQP 734
KN+II +GS+Q IPEIP++LK +YKTVWEI Q T++ MA +RG +IDQSQSLNIH+ +P
Sbjct: 583 KNQIIACNGSIQSIPEIPDDLKQLYKTVWEISQKTVLKMAAERGAFIDQSQSLNIHIAEP 642
Query: 735 NFKKVTSLHFRTWSRGLKTGMYYLRSRA 762
N+ K+TS+HF W +GLKTGMYYLR+RA
Sbjct: 643 NYGKLTSMHFYGWKQGLKTGMYYLRTRA 670
>pdb|1R1R|A Chain A, Ribonucleotide Reductase R1 Protein Mutant Y730f With A
Reduced Active Site From Escherichia Coli
pdb|1R1R|B Chain B, Ribonucleotide Reductase R1 Protein Mutant Y730f With A
Reduced Active Site From Escherichia Coli
pdb|1R1R|C Chain C, Ribonucleotide Reductase R1 Protein Mutant Y730f With A
Reduced Active Site From Escherichia Coli
Length = 761
Score = 225 bits (573), Expect = 9e-59, Method: Compositional matrix adjust.
Identities = 197/703 (28%), Positives = 309/703 (43%), Gaps = 70/703 (9%)
Query: 1 MYVVKRDGRQEAVHFDKITARLKKLSYGLSTEHCDPVLVSQKVCAGVYKGVTTSQLDE-L 59
+ V KRDG E ++ DKI L + GL V + + Y G+ TS + E +
Sbjct: 5 LLVTKRDGSTERINLDKIHRVLDWAAEGLHNVSISQVELRSHI--QFYDGIKTSDIHETI 62
Query: 60 XXXXXXXXXXNHPDYASLAARIAVSNLHKNTKKSFSETIKDMYNHYNE--RSGLKAPLIA 117
+ PDY LAAR+A+ +L K F +Y+H + G +
Sbjct: 63 IKAAADLISRDAPDYQYLAARLAIFHLRKKAYGQFEPPA--LYDHVVKMVEMGKYDNHLL 120
Query: 118 DDIYEIIMKNAACLDSEIIXXXXXXXXXXXXKTLERSYLL--KVQGKVVERPQHMLMRVS 175
+D E K +D+ I K LE YL+ +V G++ E Q + + V+
Sbjct: 121 EDYTEEEFKQ---MDTFIDHDRDMTFSYAAVKQLEGKYLVQNRVTGEIYESAQFLYILVA 177
Query: 176 IGIHKD-----DIDSAIKTYHMMSQRWFTHASPTLFNAGTPRPQLSSCFLV-CMKDDSIE 229
+ + + + Y +S + +P + TP Q SSC L+ C DS++
Sbjct: 178 ACLFSNYPRETRLQYVKRFYDAVSTFKISLPTPIMSGVRTPTRQFSSCVLIEC--GDSLD 235
Query: 230 GIYETLKECAVISKSAGGIGVSVHNIRATGSYIRGTNGTSNGIVPMLRVFNDTARYVDQG 289
I T GIG++ IRA GS IRG G +P + F + QG
Sbjct: 236 SINATSSAIVKYVSQRAGIGINAGRIRALGSPIRGGEAFHTGCIPFYKHFQTAVKSCSQG 295
Query: 290 GGKRKGAFAVYLEPWHADIFEFLNLKKNHGKEEHRARDLFYALWVPDLFMERVQTNGQWS 349
G R GA ++ WH ++ L LK N G E +R R + Y + + L R+ +
Sbjct: 296 G-VRGGAATLFYPMWHLEVESLLVLKNNRGVEGNRVRHMDYGVQINKLMYTRLLKGEDIT 354
Query: 350 LFCPNEASGLADCWGA---EFEKLYTHYEREGKAKKV-VQAQNLWFEILTSQIETGTPYM 405
LF P++ GL D + A EFE+LYT YE++ +K V+A L+ ++ + TG Y+
Sbjct: 355 LFSPSDVPGLYDAFFADQEEFERLYTKYEKDDSIRKQRVKAVELFSLMMQERASTGRIYI 414
Query: 406 LFKDTCNRKSN-QQNLGTIKSSNLCTEIIEYTSPT--------ETAVCNLASIALPRFVR 456
D CN S + ++ SNLC EI T P E A+C L++ L
Sbjct: 415 QNVDHCNTHSPFDPAIAPVRQSNLCLEIALPTKPLNDVNDENGEIALCTLSAFNL----- 469
Query: 457 EKDVPVESHPSRIVGSRGSKNRFFDFEKLAEVTAIVTENLNKIIDVNYYPVETARRSNLR 516
G+ N + ++L E+ + L+ ++D YP+ A+R +
Sbjct: 470 -----------------GAIN---NLDELEELAILAVRALDALLDYQDYPIPAAKRGAMG 509
Query: 517 HRPIGIGVQGLADTFILLGMAFESPEAQQLNKDIFETIYYHALKTSSEIAAKEGPYETYH 576
R +GIGV A G + A L FE I Y+ LK S+E+A ++G ++
Sbjct: 510 RRTLGIGVINFAYYLAKHGKRYSDGSANNLTHKTFEAIQYYLLKASNELAKEQGACPWFN 569
Query: 577 NSPVSKGILQPDMW----NVIPSD--RWDWGVLRDMISKNGVRNSLLVAPMPTASTSQIL 630
+ +KGIL D + + I ++ +DW LR+ I +G+RNS L A MP+ ++SQI
Sbjct: 570 ETTYAKGILPIDTYKKDLDTIANEPLHYDWEALRESIKTHGLRNSTLSALMPSETSSQIS 629
Query: 631 GNNECFEP---YTSNIYSRRVLSGEFVVVNKHLLHDLTEMGIW 670
EP Y S S+ + + V +H LHD E+ +W
Sbjct: 630 NATNGIEPPRGYVSIKASKDGILRQVVPDYEH-LHDAYEL-LW 670
>pdb|4R1R|A Chain A, Ribonucleotide Reductase R1 Protein With Substrate, Gdp
And Effector Dttp From Escherichia Coli
pdb|4R1R|B Chain B, Ribonucleotide Reductase R1 Protein With Substrate, Gdp
And Effector Dttp From Escherichia Coli
pdb|4R1R|C Chain C, Ribonucleotide Reductase R1 Protein With Substrate, Gdp
And Effector Dttp From Escherichia Coli
Length = 761
Score = 225 bits (573), Expect = 1e-58, Method: Compositional matrix adjust.
Identities = 197/703 (28%), Positives = 309/703 (43%), Gaps = 70/703 (9%)
Query: 1 MYVVKRDGRQEAVHFDKITARLKKLSYGLSTEHCDPVLVSQKVCAGVYKGVTTSQLDE-L 59
+ V KRDG E ++ DKI L + GL V + + Y G+ TS + E +
Sbjct: 5 LLVTKRDGSTERINLDKIHRVLDWAAEGLHNVSISQVELRSHI--QFYDGIKTSDIHETI 62
Query: 60 XXXXXXXXXXNHPDYASLAARIAVSNLHKNTKKSFSETIKDMYNHYNE--RSGLKAPLIA 117
+ PDY LAAR+A+ +L K F +Y+H + G +
Sbjct: 63 IKAAADLISRDAPDYQYLAARLAIFHLRKKAYGQFEPPA--LYDHVVKMVEMGKYDNHLL 120
Query: 118 DDIYEIIMKNAACLDSEIIXXXXXXXXXXXXKTLERSYLL--KVQGKVVERPQHMLMRVS 175
+D E K +D+ I K LE YL+ +V G++ E Q + + V+
Sbjct: 121 EDYTEEEFKQ---MDTFIDHDRDMTFSYAAVKQLEGKYLVQNRVTGEIYESAQFLYILVA 177
Query: 176 IGIHKD-----DIDSAIKTYHMMSQRWFTHASPTLFNAGTPRPQLSSCFLV-CMKDDSIE 229
+ + + + Y +S + +P + TP Q SSC L+ C DS++
Sbjct: 178 ACLFSNYPRETRLQYVKRFYDAVSTFKISLPTPIMSGVRTPTRQFSSCVLIEC--GDSLD 235
Query: 230 GIYETLKECAVISKSAGGIGVSVHNIRATGSYIRGTNGTSNGIVPMLRVFNDTARYVDQG 289
I T GIG++ IRA GS IRG G +P + F + QG
Sbjct: 236 SINATSSAIVKYVSQRAGIGINAGRIRALGSPIRGGEAFHTGCIPFYKHFQTAVKSASQG 295
Query: 290 GGKRKGAFAVYLEPWHADIFEFLNLKKNHGKEEHRARDLFYALWVPDLFMERVQTNGQWS 349
G R GA ++ WH ++ L LK N G E +R R + Y + + L R+ +
Sbjct: 296 G-VRGGAATLFYPMWHLEVESLLVLKNNRGVEGNRVRHMDYGVQINKLMYTRLLKGEDIT 354
Query: 350 LFCPNEASGLADCWGA---EFEKLYTHYEREGKAKKV-VQAQNLWFEILTSQIETGTPYM 405
LF P++ GL D + A EFE+LYT YE++ +K V+A L+ ++ + TG Y+
Sbjct: 355 LFSPSDVPGLYDAFFADQEEFERLYTKYEKDDSIRKQRVKAVELFSLMMQERASTGRIYI 414
Query: 406 LFKDTCNRKSN-QQNLGTIKSSNLCTEIIEYTSPT--------ETAVCNLASIALPRFVR 456
D CN S + ++ SNLC EI T P E A+C L++ L
Sbjct: 415 QNVDHCNTHSPFDPAIAPVRQSNLCLEIALPTKPLNDVNDENGEIALCTLSAFNL----- 469
Query: 457 EKDVPVESHPSRIVGSRGSKNRFFDFEKLAEVTAIVTENLNKIIDVNYYPVETARRSNLR 516
G+ N + ++L E+ + L+ ++D YP+ A+R +
Sbjct: 470 -----------------GAIN---NLDELEELAILAVRALDALLDYQDYPIPAAKRGAMG 509
Query: 517 HRPIGIGVQGLADTFILLGMAFESPEAQQLNKDIFETIYYHALKTSSEIAAKEGPYETYH 576
R +GIGV A G + A L FE I Y+ LK S+E+A ++G ++
Sbjct: 510 RRTLGIGVINFAYYLAKHGKRYSDGSANNLTHKTFEAIQYYLLKASNELAKEQGACPWFN 569
Query: 577 NSPVSKGILQPDMW----NVIPSD--RWDWGVLRDMISKNGVRNSLLVAPMPTASTSQIL 630
+ +KGIL D + + I ++ +DW LR+ I +G+RNS L A MP+ ++SQI
Sbjct: 570 ETTYAKGILPIDTYKKDLDTIANEPLHYDWEALRESIKTHGLRNSTLSALMPSETSSQIS 629
Query: 631 GNNECFEP---YTSNIYSRRVLSGEFVVVNKHLLHDLTEMGIW 670
EP Y S S+ + + V +H LHD E+ +W
Sbjct: 630 NATNGIEPPRGYVSIKASKDGILRQVVPDYEH-LHDAYEL-LW 670
>pdb|2XAX|A Chain A, Ribonucleotide Reductase Y730no2y And Y731a Modified R1
Subunit Of E. Coli
pdb|2XAX|B Chain B, Ribonucleotide Reductase Y730no2y And Y731a Modified R1
Subunit Of E. Coli
pdb|2XAX|C Chain C, Ribonucleotide Reductase Y730no2y And Y731a Modified R1
Subunit Of E. Coli
Length = 761
Score = 225 bits (573), Expect = 1e-58, Method: Compositional matrix adjust.
Identities = 197/703 (28%), Positives = 309/703 (43%), Gaps = 70/703 (9%)
Query: 1 MYVVKRDGRQEAVHFDKITARLKKLSYGLSTEHCDPVLVSQKVCAGVYKGVTTSQLDE-L 59
+ V KRDG E ++ DKI L + GL V + + Y G+ TS + E +
Sbjct: 5 LLVTKRDGSTERINLDKIHRVLDWAAEGLHNVSISQVELRSHI--QFYDGIKTSDIHETI 62
Query: 60 XXXXXXXXXXNHPDYASLAARIAVSNLHKNTKKSFSETIKDMYNHYNE--RSGLKAPLIA 117
+ PDY LAAR+A+ +L K F +Y+H + G +
Sbjct: 63 IKAAADLISRDAPDYQYLAARLAIFHLRKKAYGQFEPPA--LYDHVVKMVEMGKYDNHLL 120
Query: 118 DDIYEIIMKNAACLDSEIIXXXXXXXXXXXXKTLERSYLL--KVQGKVVERPQHMLMRVS 175
+D E K +D+ I K LE YL+ +V G++ E Q + + V+
Sbjct: 121 EDYTEEEFKQ---MDTFIDHDRDMTFSYAAVKQLEGKYLVQNRVTGEIYESAQFLYILVA 177
Query: 176 IGIHKD-----DIDSAIKTYHMMSQRWFTHASPTLFNAGTPRPQLSSCFLV-CMKDDSIE 229
+ + + + Y +S + +P + TP Q SSC L+ C DS++
Sbjct: 178 ACLFSNYPRETRLQYVKRFYDAVSTFKISLPTPIMSGVRTPTRQFSSCVLIEC--GDSLD 235
Query: 230 GIYETLKECAVISKSAGGIGVSVHNIRATGSYIRGTNGTSNGIVPMLRVFNDTARYVDQG 289
I T GIG++ IRA GS IRG G +P + F + QG
Sbjct: 236 SINATSSAIVKYVSQRAGIGINAGRIRALGSPIRGGEAFHTGCIPFYKHFQTAVKSCSQG 295
Query: 290 GGKRKGAFAVYLEPWHADIFEFLNLKKNHGKEEHRARDLFYALWVPDLFMERVQTNGQWS 349
G R GA ++ WH ++ L LK N G E +R R + Y + + L R+ +
Sbjct: 296 G-VRGGAATLFYPMWHLEVESLLVLKNNRGVEGNRVRHMDYGVQINKLMYTRLLKGEDIT 354
Query: 350 LFCPNEASGLADCWGA---EFEKLYTHYEREGKAKKV-VQAQNLWFEILTSQIETGTPYM 405
LF P++ GL D + A EFE+LYT YE++ +K V+A L+ ++ + TG Y+
Sbjct: 355 LFSPSDVPGLYDAFFADQEEFERLYTKYEKDDSIRKQRVKAVELFSLMMQERASTGRIYI 414
Query: 406 LFKDTCNRKSN-QQNLGTIKSSNLCTEIIEYTSPT--------ETAVCNLASIALPRFVR 456
D CN S + ++ SNLC EI T P E A+C L++ L
Sbjct: 415 QNVDHCNTHSPFDPAIAPVRQSNLCLEIALPTKPLNDVNDENGEIALCTLSAFNL----- 469
Query: 457 EKDVPVESHPSRIVGSRGSKNRFFDFEKLAEVTAIVTENLNKIIDVNYYPVETARRSNLR 516
G+ N + ++L E+ + L+ ++D YP+ A+R +
Sbjct: 470 -----------------GAIN---NLDELEELAILAVRALDALLDYQDYPIPAAKRGAMG 509
Query: 517 HRPIGIGVQGLADTFILLGMAFESPEAQQLNKDIFETIYYHALKTSSEIAAKEGPYETYH 576
R +GIGV A G + A L FE I Y+ LK S+E+A ++G ++
Sbjct: 510 RRTLGIGVINFAYYLAKHGKRYSDGSANNLTHKTFEAIQYYLLKASNELAKEQGACPWFN 569
Query: 577 NSPVSKGILQPDMW----NVIPSD--RWDWGVLRDMISKNGVRNSLLVAPMPTASTSQIL 630
+ +KGIL D + + I ++ +DW LR+ I +G+RNS L A MP+ ++SQI
Sbjct: 570 ETTYAKGILPIDTYKKDLDTIANEPLHYDWEALRESIKTHGLRNSTLSALMPSETSSQIS 629
Query: 631 GNNECFEP---YTSNIYSRRVLSGEFVVVNKHLLHDLTEMGIW 670
EP Y S S+ + + V +H LHD E+ +W
Sbjct: 630 NATNGIEPPRGYVSIKASKDGILRQVVPDYEH-LHDAYEL-LW 670
>pdb|3R1R|A Chain A, Ribonucleotide Reductase R1 Protein With Amppnp Occupying
The Activity Site From Escherichia Coli
pdb|3R1R|B Chain B, Ribonucleotide Reductase R1 Protein With Amppnp Occupying
The Activity Site From Escherichia Coli
pdb|3R1R|C Chain C, Ribonucleotide Reductase R1 Protein With Amppnp Occupying
The Activity Site From Escherichia Coli
pdb|2R1R|A Chain A, Ribonucleotide Reductase R1 Protein With Dttp Occupying
The Specificity Site From Escherichia Coli
pdb|2R1R|B Chain B, Ribonucleotide Reductase R1 Protein With Dttp Occupying
The Specificity Site From Escherichia Coli
pdb|2R1R|C Chain C, Ribonucleotide Reductase R1 Protein With Dttp Occupying
The Specificity Site From Escherichia Coli
pdb|2X0X|A Chain A, Ribonucleotide Reductase R1 Subunit Of E. Coli To 2.3 A
Resolution
pdb|2X0X|B Chain B, Ribonucleotide Reductase R1 Subunit Of E. Coli To 2.3 A
Resolution
pdb|2X0X|C Chain C, Ribonucleotide Reductase R1 Subunit Of E. Coli To 2.3 A
Resolution
pdb|3UUS|A Chain A, Crystal Structure Of The Datp Inhibited E. Coli Class Ia
Ribonucleotide Reductase Complex
pdb|3UUS|B Chain B, Crystal Structure Of The Datp Inhibited E. Coli Class Ia
Ribonucleotide Reductase Complex
pdb|3UUS|C Chain C, Crystal Structure Of The Datp Inhibited E. Coli Class Ia
Ribonucleotide Reductase Complex
pdb|3UUS|D Chain D, Crystal Structure Of The Datp Inhibited E. Coli Class Ia
Ribonucleotide Reductase Complex
pdb|4ERM|A Chain A, Crystal Structure Of The Datp Inhibited E. Coli Class Ia
Ribonucleotide Reductase Complex At 4 Angstroms
Resolution
pdb|4ERM|B Chain B, Crystal Structure Of The Datp Inhibited E. Coli Class Ia
Ribonucleotide Reductase Complex At 4 Angstroms
Resolution
pdb|4ERM|C Chain C, Crystal Structure Of The Datp Inhibited E. Coli Class Ia
Ribonucleotide Reductase Complex At 4 Angstroms
Resolution
pdb|4ERM|D Chain D, Crystal Structure Of The Datp Inhibited E. Coli Class Ia
Ribonucleotide Reductase Complex At 4 Angstroms
Resolution
pdb|4ERP|A Chain A, Crystal Structure Of A Gemcitabine-Diphosphate Inhibited
E. Coli Class Ia Ribonucleotide Reductase Complex
pdb|4ERP|B Chain B, Crystal Structure Of A Gemcitabine-Diphosphate Inhibited
E. Coli Class Ia Ribonucleotide Reductase Complex
pdb|4ERP|C Chain C, Crystal Structure Of A Gemcitabine-Diphosphate Inhibited
E. Coli Class Ia Ribonucleotide Reductase Complex
pdb|4ERP|D Chain D, Crystal Structure Of A Gemcitabine-Diphosphate Inhibited
E. Coli Class Ia Ribonucleotide Reductase Complex
Length = 761
Score = 224 bits (572), Expect = 1e-58, Method: Compositional matrix adjust.
Identities = 197/703 (28%), Positives = 309/703 (43%), Gaps = 70/703 (9%)
Query: 1 MYVVKRDGRQEAVHFDKITARLKKLSYGLSTEHCDPVLVSQKVCAGVYKGVTTSQLDE-L 59
+ V KRDG E ++ DKI L + GL V + + Y G+ TS + E +
Sbjct: 5 LLVTKRDGSTERINLDKIHRVLDWAAEGLHNVSISQVELRSHI--QFYDGIKTSDIHETI 62
Query: 60 XXXXXXXXXXNHPDYASLAARIAVSNLHKNTKKSFSETIKDMYNHYNE--RSGLKAPLIA 117
+ PDY LAAR+A+ +L K F +Y+H + G +
Sbjct: 63 IKAAADLISRDAPDYQYLAARLAIFHLRKKAYGQFEPPA--LYDHVVKMVEMGKYDNHLL 120
Query: 118 DDIYEIIMKNAACLDSEIIXXXXXXXXXXXXKTLERSYLL--KVQGKVVERPQHMLMRVS 175
+D E K +D+ I K LE YL+ +V G++ E Q + + V+
Sbjct: 121 EDYTEEEFKQ---MDTFIDHDRDMTFSYAAVKQLEGKYLVQNRVTGEIYESAQFLYILVA 177
Query: 176 IGIHKD-----DIDSAIKTYHMMSQRWFTHASPTLFNAGTPRPQLSSCFLV-CMKDDSIE 229
+ + + + Y +S + +P + TP Q SSC L+ C DS++
Sbjct: 178 ACLFSNYPRETRLQYVKRFYDAVSTFKISLPTPIMSGVRTPTRQFSSCVLIEC--GDSLD 235
Query: 230 GIYETLKECAVISKSAGGIGVSVHNIRATGSYIRGTNGTSNGIVPMLRVFNDTARYVDQG 289
I T GIG++ IRA GS IRG G +P + F + QG
Sbjct: 236 SINATSSAIVKYVSQRAGIGINAGRIRALGSPIRGGEAFHTGCIPFYKHFQTAVKSCSQG 295
Query: 290 GGKRKGAFAVYLEPWHADIFEFLNLKKNHGKEEHRARDLFYALWVPDLFMERVQTNGQWS 349
G R GA ++ WH ++ L LK N G E +R R + Y + + L R+ +
Sbjct: 296 G-VRGGAATLFYPMWHLEVESLLVLKNNRGVEGNRVRHMDYGVQINKLMYTRLLKGEDIT 354
Query: 350 LFCPNEASGLADCWGA---EFEKLYTHYEREGKAKKV-VQAQNLWFEILTSQIETGTPYM 405
LF P++ GL D + A EFE+LYT YE++ +K V+A L+ ++ + TG Y+
Sbjct: 355 LFSPSDVPGLYDAFFADQEEFERLYTKYEKDDSIRKQRVKAVELFSLMMQERASTGRIYI 414
Query: 406 LFKDTCNRKSN-QQNLGTIKSSNLCTEIIEYTSPT--------ETAVCNLASIALPRFVR 456
D CN S + ++ SNLC EI T P E A+C L++ L
Sbjct: 415 QNVDHCNTHSPFDPAIAPVRQSNLCLEIALPTKPLNDVNDENGEIALCTLSAFNL----- 469
Query: 457 EKDVPVESHPSRIVGSRGSKNRFFDFEKLAEVTAIVTENLNKIIDVNYYPVETARRSNLR 516
G+ N + ++L E+ + L+ ++D YP+ A+R +
Sbjct: 470 -----------------GAIN---NLDELEELAILAVRALDALLDYQDYPIPAAKRGAMG 509
Query: 517 HRPIGIGVQGLADTFILLGMAFESPEAQQLNKDIFETIYYHALKTSSEIAAKEGPYETYH 576
R +GIGV A G + A L FE I Y+ LK S+E+A ++G ++
Sbjct: 510 RRTLGIGVINFAYYLAKHGKRYSDGSANNLTHKTFEAIQYYLLKASNELAKEQGACPWFN 569
Query: 577 NSPVSKGILQPDMW----NVIPSD--RWDWGVLRDMISKNGVRNSLLVAPMPTASTSQIL 630
+ +KGIL D + + I ++ +DW LR+ I +G+RNS L A MP+ ++SQI
Sbjct: 570 ETTYAKGILPIDTYKKDLDTIANEPLHYDWEALRESIKTHGLRNSTLSALMPSETSSQIS 629
Query: 631 GNNECFEP---YTSNIYSRRVLSGEFVVVNKHLLHDLTEMGIW 670
EP Y S S+ + + V +H LHD E+ +W
Sbjct: 630 NATNGIEPPRGYVSIKASKDGILRQVVPDYEH-LHDAYEL-LW 670
>pdb|2XAP|A Chain A, Ribonucleotide Reductase Y731no2y Modified R1 Subunit Of
E. Coli To 2.1 A Resolution
pdb|2XAP|B Chain B, Ribonucleotide Reductase Y731no2y Modified R1 Subunit Of
E. Coli To 2.1 A Resolution
pdb|2XAP|C Chain C, Ribonucleotide Reductase Y731no2y Modified R1 Subunit Of
E. Coli To 2.1 A Resolution
pdb|2XO5|A Chain A, Ribonucleotide Reductase Y731nh2y Modified R1 Subunit Of
E. Coli
pdb|2XO5|B Chain B, Ribonucleotide Reductase Y731nh2y Modified R1 Subunit Of
E. Coli
pdb|2XO5|C Chain C, Ribonucleotide Reductase Y731nh2y Modified R1 Subunit Of
E. Coli
Length = 761
Score = 224 bits (572), Expect = 1e-58, Method: Compositional matrix adjust.
Identities = 197/703 (28%), Positives = 309/703 (43%), Gaps = 70/703 (9%)
Query: 1 MYVVKRDGRQEAVHFDKITARLKKLSYGLSTEHCDPVLVSQKVCAGVYKGVTTSQLDE-L 59
+ V KRDG E ++ DKI L + GL V + + Y G+ TS + E +
Sbjct: 5 LLVTKRDGSTERINLDKIHRVLDWAAEGLHNVSISQVELRSHI--QFYDGIKTSDIHETI 62
Query: 60 XXXXXXXXXXNHPDYASLAARIAVSNLHKNTKKSFSETIKDMYNHYNE--RSGLKAPLIA 117
+ PDY LAAR+A+ +L K F +Y+H + G +
Sbjct: 63 IKAAADLISRDAPDYQYLAARLAIFHLRKKAYGQFEPPA--LYDHVVKMVEMGKYDNHLL 120
Query: 118 DDIYEIIMKNAACLDSEIIXXXXXXXXXXXXKTLERSYLL--KVQGKVVERPQHMLMRVS 175
+D E K +D+ I K LE YL+ +V G++ E Q + + V+
Sbjct: 121 EDYTEEEFKQ---MDTFIDHDRDMTFSYAAVKQLEGKYLVQNRVTGEIYESAQFLYILVA 177
Query: 176 IGIHKD-----DIDSAIKTYHMMSQRWFTHASPTLFNAGTPRPQLSSCFLV-CMKDDSIE 229
+ + + + Y +S + +P + TP Q SSC L+ C DS++
Sbjct: 178 ACLFSNYPRETRLQYVKRFYDAVSTFKISLPTPIMSGVRTPTRQFSSCVLIEC--GDSLD 235
Query: 230 GIYETLKECAVISKSAGGIGVSVHNIRATGSYIRGTNGTSNGIVPMLRVFNDTARYVDQG 289
I T GIG++ IRA GS IRG G +P + F + QG
Sbjct: 236 SINATSSAIVKYVSQRAGIGINAGRIRALGSPIRGGEAFHTGCIPFYKHFQTAVKSCSQG 295
Query: 290 GGKRKGAFAVYLEPWHADIFEFLNLKKNHGKEEHRARDLFYALWVPDLFMERVQTNGQWS 349
G R GA ++ WH ++ L LK N G E +R R + Y + + L R+ +
Sbjct: 296 G-VRGGAATLFYPMWHLEVESLLVLKNNRGVEGNRVRHMDYGVQINKLMYTRLLKGEDIT 354
Query: 350 LFCPNEASGLADCWGA---EFEKLYTHYEREGKAKKV-VQAQNLWFEILTSQIETGTPYM 405
LF P++ GL D + A EFE+LYT YE++ +K V+A L+ ++ + TG Y+
Sbjct: 355 LFSPSDVPGLYDAFFADQEEFERLYTKYEKDDSIRKQRVKAVELFSLMMQERASTGRIYI 414
Query: 406 LFKDTCNRKSN-QQNLGTIKSSNLCTEIIEYTSPT--------ETAVCNLASIALPRFVR 456
D CN S + ++ SNLC EI T P E A+C L++ L
Sbjct: 415 QNVDHCNTHSPFDPAIAPVRQSNLCLEIALPTKPLNDVNDENGEIALCTLSAFNL----- 469
Query: 457 EKDVPVESHPSRIVGSRGSKNRFFDFEKLAEVTAIVTENLNKIIDVNYYPVETARRSNLR 516
G+ N + ++L E+ + L+ ++D YP+ A+R +
Sbjct: 470 -----------------GAIN---NLDELEELAILAVRALDALLDYQDYPIPAAKRGAMG 509
Query: 517 HRPIGIGVQGLADTFILLGMAFESPEAQQLNKDIFETIYYHALKTSSEIAAKEGPYETYH 576
R +GIGV A G + A L FE I Y+ LK S+E+A ++G ++
Sbjct: 510 RRTLGIGVINFAYYLAKHGKRYSDGSANNLTHKTFEAIQYYLLKASNELAKEQGACPWFN 569
Query: 577 NSPVSKGILQPDMW----NVIPSD--RWDWGVLRDMISKNGVRNSLLVAPMPTASTSQIL 630
+ +KGIL D + + I ++ +DW LR+ I +G+RNS L A MP+ ++SQI
Sbjct: 570 ETTYAKGILPIDTYKKDLDTIANEPLHYDWEALRESIKTHGLRNSTLSALMPSETSSQIS 629
Query: 631 GNNECFEP---YTSNIYSRRVLSGEFVVVNKHLLHDLTEMGIW 670
EP Y S S+ + + V +H LHD E+ +W
Sbjct: 630 NATNGIEPPRGYVSIKASKDGILRQVVPDYEH-LHDAYEL-LW 670
>pdb|2XAK|A Chain A, Ribonucleotide Reductase Y730no2y Modified R1 Subunit Of
E. Coli
pdb|2XAK|B Chain B, Ribonucleotide Reductase Y730no2y Modified R1 Subunit Of
E. Coli
pdb|2XAK|C Chain C, Ribonucleotide Reductase Y730no2y Modified R1 Subunit Of
E. Coli
pdb|2XO4|A Chain A, Ribonucleotide Reductase Y730nh2y Modified R1 Subunit Of
E. Coli
pdb|2XO4|B Chain B, Ribonucleotide Reductase Y730nh2y Modified R1 Subunit Of
E. Coli
pdb|2XO4|C Chain C, Ribonucleotide Reductase Y730nh2y Modified R1 Subunit Of
E. Coli
Length = 761
Score = 224 bits (572), Expect = 1e-58, Method: Compositional matrix adjust.
Identities = 197/703 (28%), Positives = 309/703 (43%), Gaps = 70/703 (9%)
Query: 1 MYVVKRDGRQEAVHFDKITARLKKLSYGLSTEHCDPVLVSQKVCAGVYKGVTTSQLDE-L 59
+ V KRDG E ++ DKI L + GL V + + Y G+ TS + E +
Sbjct: 5 LLVTKRDGSTERINLDKIHRVLDWAAEGLHNVSISQVELRSHI--QFYDGIKTSDIHETI 62
Query: 60 XXXXXXXXXXNHPDYASLAARIAVSNLHKNTKKSFSETIKDMYNHYNE--RSGLKAPLIA 117
+ PDY LAAR+A+ +L K F +Y+H + G +
Sbjct: 63 IKAAADLISRDAPDYQYLAARLAIFHLRKKAYGQFEPPA--LYDHVVKMVEMGKYDNHLL 120
Query: 118 DDIYEIIMKNAACLDSEIIXXXXXXXXXXXXKTLERSYLL--KVQGKVVERPQHMLMRVS 175
+D E K +D+ I K LE YL+ +V G++ E Q + + V+
Sbjct: 121 EDYTEEEFKQ---MDTFIDHDRDMTFSYAAVKQLEGKYLVQNRVTGEIYESAQFLYILVA 177
Query: 176 IGIHKD-----DIDSAIKTYHMMSQRWFTHASPTLFNAGTPRPQLSSCFLV-CMKDDSIE 229
+ + + + Y +S + +P + TP Q SSC L+ C DS++
Sbjct: 178 ACLFSNYPRETRLQYVKRFYDAVSTFKISLPTPIMSGVRTPTRQFSSCVLIEC--GDSLD 235
Query: 230 GIYETLKECAVISKSAGGIGVSVHNIRATGSYIRGTNGTSNGIVPMLRVFNDTARYVDQG 289
I T GIG++ IRA GS IRG G +P + F + QG
Sbjct: 236 SINATSSAIVKYVSQRAGIGINAGRIRALGSPIRGGEAFHTGCIPFYKHFQTAVKSCSQG 295
Query: 290 GGKRKGAFAVYLEPWHADIFEFLNLKKNHGKEEHRARDLFYALWVPDLFMERVQTNGQWS 349
G R GA ++ WH ++ L LK N G E +R R + Y + + L R+ +
Sbjct: 296 G-VRGGAATLFYPMWHLEVESLLVLKNNRGVEGNRVRHMDYGVQINKLMYTRLLKGEDIT 354
Query: 350 LFCPNEASGLADCWGA---EFEKLYTHYEREGKAKKV-VQAQNLWFEILTSQIETGTPYM 405
LF P++ GL D + A EFE+LYT YE++ +K V+A L+ ++ + TG Y+
Sbjct: 355 LFSPSDVPGLYDAFFADQEEFERLYTKYEKDDSIRKQRVKAVELFSLMMQERASTGRIYI 414
Query: 406 LFKDTCNRKSN-QQNLGTIKSSNLCTEIIEYTSPT--------ETAVCNLASIALPRFVR 456
D CN S + ++ SNLC EI T P E A+C L++ L
Sbjct: 415 QNVDHCNTHSPFDPAIAPVRQSNLCLEIALPTKPLNDVNDENGEIALCTLSAFNL----- 469
Query: 457 EKDVPVESHPSRIVGSRGSKNRFFDFEKLAEVTAIVTENLNKIIDVNYYPVETARRSNLR 516
G+ N + ++L E+ + L+ ++D YP+ A+R +
Sbjct: 470 -----------------GAIN---NLDELEELAILAVRALDALLDYQDYPIPAAKRGAMG 509
Query: 517 HRPIGIGVQGLADTFILLGMAFESPEAQQLNKDIFETIYYHALKTSSEIAAKEGPYETYH 576
R +GIGV A G + A L FE I Y+ LK S+E+A ++G ++
Sbjct: 510 RRTLGIGVINFAYYLAKHGKRYSDGSANNLTHKTFEAIQYYLLKASNELAKEQGACPWFN 569
Query: 577 NSPVSKGILQPDMW----NVIPSD--RWDWGVLRDMISKNGVRNSLLVAPMPTASTSQIL 630
+ +KGIL D + + I ++ +DW LR+ I +G+RNS L A MP+ ++SQI
Sbjct: 570 ETTYAKGILPIDTYKKDLDTIANEPLHYDWEALRESIKTHGLRNSTLSALMPSETSSQIS 629
Query: 631 GNNECFEP---YTSNIYSRRVLSGEFVVVNKHLLHDLTEMGIW 670
EP Y S S+ + + V +H LHD E+ +W
Sbjct: 630 NATNGIEPPRGYVSIKASKDGILRQVVPDYEH-LHDAYEL-LW 670
>pdb|2XAW|A Chain A, Ribonucleotide Reductase Y730no2y And Y731f Modified R1
Subunit Of E. Coli
pdb|2XAW|B Chain B, Ribonucleotide Reductase Y730no2y And Y731f Modified R1
Subunit Of E. Coli
pdb|2XAW|C Chain C, Ribonucleotide Reductase Y730no2y And Y731f Modified R1
Subunit Of E. Coli
Length = 761
Score = 224 bits (572), Expect = 1e-58, Method: Compositional matrix adjust.
Identities = 197/703 (28%), Positives = 309/703 (43%), Gaps = 70/703 (9%)
Query: 1 MYVVKRDGRQEAVHFDKITARLKKLSYGLSTEHCDPVLVSQKVCAGVYKGVTTSQLDE-L 59
+ V KRDG E ++ DKI L + GL V + + Y G+ TS + E +
Sbjct: 5 LLVTKRDGSTERINLDKIHRVLDWAAEGLHNVSISQVELRSHI--QFYDGIKTSDIHETI 62
Query: 60 XXXXXXXXXXNHPDYASLAARIAVSNLHKNTKKSFSETIKDMYNHYNE--RSGLKAPLIA 117
+ PDY LAAR+A+ +L K F +Y+H + G +
Sbjct: 63 IKAAADLISRDAPDYQYLAARLAIFHLRKKAYGQFEPPA--LYDHVVKMVEMGKYDNHLL 120
Query: 118 DDIYEIIMKNAACLDSEIIXXXXXXXXXXXXKTLERSYLL--KVQGKVVERPQHMLMRVS 175
+D E K +D+ I K LE YL+ +V G++ E Q + + V+
Sbjct: 121 EDYTEEEFKQ---MDTFIDHDRDMTFSYAAVKQLEGKYLVQNRVTGEIYESAQFLYILVA 177
Query: 176 IGIHKD-----DIDSAIKTYHMMSQRWFTHASPTLFNAGTPRPQLSSCFLV-CMKDDSIE 229
+ + + + Y +S + +P + TP Q SSC L+ C DS++
Sbjct: 178 ACLFSNYPRETRLQYVKRFYDAVSTFKISLPTPIMSGVRTPTRQFSSCVLIEC--GDSLD 235
Query: 230 GIYETLKECAVISKSAGGIGVSVHNIRATGSYIRGTNGTSNGIVPMLRVFNDTARYVDQG 289
I T GIG++ IRA GS IRG G +P + F + QG
Sbjct: 236 SINATSSAIVKYVSQRAGIGINAGRIRALGSPIRGGEAFHTGCIPFYKHFQTAVKSCSQG 295
Query: 290 GGKRKGAFAVYLEPWHADIFEFLNLKKNHGKEEHRARDLFYALWVPDLFMERVQTNGQWS 349
G R GA ++ WH ++ L LK N G E +R R + Y + + L R+ +
Sbjct: 296 G-VRGGAATLFYPMWHLEVESLLVLKNNRGVEGNRVRHMDYGVQINKLMYTRLLKGEDIT 354
Query: 350 LFCPNEASGLADCWGA---EFEKLYTHYEREGKAKKV-VQAQNLWFEILTSQIETGTPYM 405
LF P++ GL D + A EFE+LYT YE++ +K V+A L+ ++ + TG Y+
Sbjct: 355 LFSPSDVPGLYDAFFADQEEFERLYTKYEKDDSIRKQRVKAVELFSLMMQERASTGRIYI 414
Query: 406 LFKDTCNRKSN-QQNLGTIKSSNLCTEIIEYTSPT--------ETAVCNLASIALPRFVR 456
D CN S + ++ SNLC EI T P E A+C L++ L
Sbjct: 415 QNVDHCNTHSPFDPAIAPVRQSNLCLEIALPTKPLNDVNDENGEIALCTLSAFNL----- 469
Query: 457 EKDVPVESHPSRIVGSRGSKNRFFDFEKLAEVTAIVTENLNKIIDVNYYPVETARRSNLR 516
G+ N + ++L E+ + L+ ++D YP+ A+R +
Sbjct: 470 -----------------GAIN---NLDELEELAILAVRALDALLDYQDYPIPAAKRGAMG 509
Query: 517 HRPIGIGVQGLADTFILLGMAFESPEAQQLNKDIFETIYYHALKTSSEIAAKEGPYETYH 576
R +GIGV A G + A L FE I Y+ LK S+E+A ++G ++
Sbjct: 510 RRTLGIGVINFAYYLAKHGKRYSDGSANNLTHKTFEAIQYYLLKASNELAKEQGACPWFN 569
Query: 577 NSPVSKGILQPDMW----NVIPSD--RWDWGVLRDMISKNGVRNSLLVAPMPTASTSQIL 630
+ +KGIL D + + I ++ +DW LR+ I +G+RNS L A MP+ ++SQI
Sbjct: 570 ETTYAKGILPIDTYKKDLDTIANEPLHYDWEALRESIKTHGLRNSTLSALMPSETSSQIS 629
Query: 631 GNNECFEP---YTSNIYSRRVLSGEFVVVNKHLLHDLTEMGIW 670
EP Y S S+ + + V +H LHD E+ +W
Sbjct: 630 NATNGIEPPRGYVSIKASKDGILRQVVPDYEH-LHDAYEL-LW 670
>pdb|2XAV|A Chain A, Ribonucleotide Reductase Y731no2y And Y730f Modified R1
Subunit Of E. Coli
pdb|2XAV|B Chain B, Ribonucleotide Reductase Y731no2y And Y730f Modified R1
Subunit Of E. Coli
pdb|2XAV|C Chain C, Ribonucleotide Reductase Y731no2y And Y730f Modified R1
Subunit Of E. Coli
Length = 761
Score = 224 bits (572), Expect = 1e-58, Method: Compositional matrix adjust.
Identities = 197/703 (28%), Positives = 309/703 (43%), Gaps = 70/703 (9%)
Query: 1 MYVVKRDGRQEAVHFDKITARLKKLSYGLSTEHCDPVLVSQKVCAGVYKGVTTSQLDE-L 59
+ V KRDG E ++ DKI L + GL V + + Y G+ TS + E +
Sbjct: 5 LLVTKRDGSTERINLDKIHRVLDWAAEGLHNVSISQVELRSHI--QFYDGIKTSDIHETI 62
Query: 60 XXXXXXXXXXNHPDYASLAARIAVSNLHKNTKKSFSETIKDMYNHYNE--RSGLKAPLIA 117
+ PDY LAAR+A+ +L K F +Y+H + G +
Sbjct: 63 IKAAADLISRDAPDYQYLAARLAIFHLRKKAYGQFEPPA--LYDHVVKMVEMGKYDNHLL 120
Query: 118 DDIYEIIMKNAACLDSEIIXXXXXXXXXXXXKTLERSYLL--KVQGKVVERPQHMLMRVS 175
+D E K +D+ I K LE YL+ +V G++ E Q + + V+
Sbjct: 121 EDYTEEEFKQ---MDTFIDHDRDMTFSYAAVKQLEGKYLVQNRVTGEIYESAQFLYILVA 177
Query: 176 IGIHKD-----DIDSAIKTYHMMSQRWFTHASPTLFNAGTPRPQLSSCFLV-CMKDDSIE 229
+ + + + Y +S + +P + TP Q SSC L+ C DS++
Sbjct: 178 ACLFSNYPRETRLQYVKRFYDAVSTFKISLPTPIMSGVRTPTRQFSSCVLIEC--GDSLD 235
Query: 230 GIYETLKECAVISKSAGGIGVSVHNIRATGSYIRGTNGTSNGIVPMLRVFNDTARYVDQG 289
I T GIG++ IRA GS IRG G +P + F + QG
Sbjct: 236 SINATSSAIVKYVSQRAGIGINAGRIRALGSPIRGGEAFHTGCIPFYKHFQTAVKSCSQG 295
Query: 290 GGKRKGAFAVYLEPWHADIFEFLNLKKNHGKEEHRARDLFYALWVPDLFMERVQTNGQWS 349
G R GA ++ WH ++ L LK N G E +R R + Y + + L R+ +
Sbjct: 296 G-VRGGAATLFYPMWHLEVESLLVLKNNRGVEGNRVRHMDYGVQINKLMYTRLLKGEDIT 354
Query: 350 LFCPNEASGLADCWGA---EFEKLYTHYEREGKAKKV-VQAQNLWFEILTSQIETGTPYM 405
LF P++ GL D + A EFE+LYT YE++ +K V+A L+ ++ + TG Y+
Sbjct: 355 LFSPSDVPGLYDAFFADQEEFERLYTKYEKDDSIRKQRVKAVELFSLMMQERASTGRIYI 414
Query: 406 LFKDTCNRKSN-QQNLGTIKSSNLCTEIIEYTSPT--------ETAVCNLASIALPRFVR 456
D CN S + ++ SNLC EI T P E A+C L++ L
Sbjct: 415 QNVDHCNTHSPFDPAIAPVRQSNLCLEIALPTKPLNDVNDENGEIALCTLSAFNL----- 469
Query: 457 EKDVPVESHPSRIVGSRGSKNRFFDFEKLAEVTAIVTENLNKIIDVNYYPVETARRSNLR 516
G+ N + ++L E+ + L+ ++D YP+ A+R +
Sbjct: 470 -----------------GAIN---NLDELEELAILAVRALDALLDYQDYPIPAAKRGAMG 509
Query: 517 HRPIGIGVQGLADTFILLGMAFESPEAQQLNKDIFETIYYHALKTSSEIAAKEGPYETYH 576
R +GIGV A G + A L FE I Y+ LK S+E+A ++G ++
Sbjct: 510 RRTLGIGVINFAYYLAKHGKRYSDGSANNLTHKTFEAIQYYLLKASNELAKEQGACPWFN 569
Query: 577 NSPVSKGILQPDMW----NVIPSD--RWDWGVLRDMISKNGVRNSLLVAPMPTASTSQIL 630
+ +KGIL D + + I ++ +DW LR+ I +G+RNS L A MP+ ++SQI
Sbjct: 570 ETTYAKGILPIDTYKKDLDTIANEPLHYDWEALRESIKTHGLRNSTLSALMPSETSSQIS 629
Query: 631 GNNECFEP---YTSNIYSRRVLSGEFVVVNKHLLHDLTEMGIW 670
EP Y S S+ + + V +H LHD E+ +W
Sbjct: 630 NATNGIEPPRGYVSIKASKDGILRQVVPDYEH-LHDAYEL-LW 670
>pdb|1RLR|A Chain A, Structure Of Ribonucleotide Reductase Protein R1
Length = 761
Score = 224 bits (571), Expect = 2e-58, Method: Compositional matrix adjust.
Identities = 197/703 (28%), Positives = 309/703 (43%), Gaps = 70/703 (9%)
Query: 1 MYVVKRDGRQEAVHFDKITARLKKLSYGLSTEHCDPVLVSQKVCAGVYKGVTTSQLDE-L 59
+ V KRDG E ++ DKI L + GL V + + Y G+ TS + E +
Sbjct: 5 LLVTKRDGSTERINLDKIHRVLDWAAEGLHNVSISQVELRSHI--QFYDGIKTSDIHETI 62
Query: 60 XXXXXXXXXXNHPDYASLAARIAVSNLHKNTKKSFSETIKDMYNHYNE--RSGLKAPLIA 117
+ PDY LAAR+A+ +L K F +Y+H + G +
Sbjct: 63 IKAAADLISRDAPDYQYLAARLAIFHLRKKAYGQFEPPA--LYDHVVKMVEMGKYDNHLL 120
Query: 118 DDIYEIIMKNAACLDSEIIXXXXXXXXXXXXKTLERSYLL--KVQGKVVERPQHMLMRVS 175
+D E K +D+ I K LE YL+ +V G++ E Q + + V+
Sbjct: 121 EDYTEEEFKQ---MDTFIDHDRDMTFSYAAVKQLEGKYLVQNRVTGEIYESAQFLYILVA 177
Query: 176 IGIHKD-----DIDSAIKTYHMMSQRWFTHASPTLFNAGTPRPQLSSCFLV-CMKDDSIE 229
+ + + + Y +S + +P + TP Q SSC L+ C DS++
Sbjct: 178 ACLFSNYPRETRLQYVKRFYDAVSTFKISLPTPIMSGVRTPTRQFSSCVLIEC--GDSLD 235
Query: 230 GIYETLKECAVISKSAGGIGVSVHNIRATGSYIRGTNGTSNGIVPMLRVFNDTARYVDQG 289
I T GIG++ IRA GS IRG G +P + F + QG
Sbjct: 236 SINATSSAIVKYVSQRAGIGINAGRIRALGSPIRGGEAFHTGCIPFYKHFQTAVKSCSQG 295
Query: 290 GGKRKGAFAVYLEPWHADIFEFLNLKKNHGKEEHRARDLFYALWVPDLFMERVQTNGQWS 349
G R GA ++ WH ++ L LK N G E +R R + Y + + L R+ +
Sbjct: 296 G-VRGGAATLFYPMWHLEVESLLVLKNNRGVEGNRVRHMDYGVQINKLMYTRLLKGEDIT 354
Query: 350 LFCPNEASGLADCWGA---EFEKLYTHYEREGKAKKV-VQAQNLWFEILTSQIETGTPYM 405
LF P++ GL D + A EFE+LYT YE++ +K V+A L+ ++ + TG Y+
Sbjct: 355 LFSPSDVPGLYDAFFADQEEFERLYTKYEKDDSIRKQRVKAVELFSLMMQERASTGRIYI 414
Query: 406 LFKDTCNRKSN-QQNLGTIKSSNLCTEIIEYTSPT--------ETAVCNLASIALPRFVR 456
D CN S + ++ SNLC EI T P E A+C L++ L
Sbjct: 415 QNVDHCNTHSPFDPAIAPVRQSNLCLEIALPTKPLNDVNDENGEIALCTLSAFNL----- 469
Query: 457 EKDVPVESHPSRIVGSRGSKNRFFDFEKLAEVTAIVTENLNKIIDVNYYPVETARRSNLR 516
G+ N + ++L E+ + L+ ++D YP+ A+R +
Sbjct: 470 -----------------GAIN---NLDELDELAILAVRALDALLDYQDYPIPAAKRGAMG 509
Query: 517 HRPIGIGVQGLADTFILLGMAFESPEAQQLNKDIFETIYYHALKTSSEIAAKEGPYETYH 576
R +GIGV A G + A L FE I Y+ LK S+E+A ++G ++
Sbjct: 510 RRTLGIGVINFAYYLAKHGKRYSDGSANNLTHKTFEAIQYYLLKASNELAKEQGACPWFN 569
Query: 577 NSPVSKGILQPDMW----NVIPSD--RWDWGVLRDMISKNGVRNSLLVAPMPTASTSQIL 630
+ +KGIL D + + I ++ +DW LR+ I +G+RNS L A MP+ ++SQI
Sbjct: 570 ETTYAKGILPIDTYKKDLDTIANEPLHYDWEALRESIKTHGLRNSTLSALMPSETSSQIS 629
Query: 631 GNNECFEP---YTSNIYSRRVLSGEFVVVNKHLLHDLTEMGIW 670
EP Y S S+ + + V +H LHD E+ +W
Sbjct: 630 NATNGIEPPRGYVSIKASKDGILRQVVPDYEH-LHDAYEL-LW 670
>pdb|6R1R|A Chain A, Ribonucleotide Reductase E441d Mutant R1 Protein From
Escherichia Coli
pdb|6R1R|B Chain B, Ribonucleotide Reductase E441d Mutant R1 Protein From
Escherichia Coli
pdb|6R1R|C Chain C, Ribonucleotide Reductase E441d Mutant R1 Protein From
Escherichia Coli
Length = 761
Score = 223 bits (569), Expect = 3e-58, Method: Compositional matrix adjust.
Identities = 196/703 (27%), Positives = 309/703 (43%), Gaps = 70/703 (9%)
Query: 1 MYVVKRDGRQEAVHFDKITARLKKLSYGLSTEHCDPVLVSQKVCAGVYKGVTTSQLDE-L 59
+ V KRDG E ++ DKI L + GL V + + Y G+ TS + E +
Sbjct: 5 LLVTKRDGSTERINLDKIHRVLDWAAEGLHNVSISQVELRSHI--QFYDGIKTSDIHETI 62
Query: 60 XXXXXXXXXXNHPDYASLAARIAVSNLHKNTKKSFSETIKDMYNHYNE--RSGLKAPLIA 117
+ PDY LAAR+A+ +L K F +Y+H + G +
Sbjct: 63 IKAAADLISRDAPDYQYLAARLAIFHLRKKAYGQFEPPA--LYDHVVKMVEMGKYDNHLL 120
Query: 118 DDIYEIIMKNAACLDSEIIXXXXXXXXXXXXKTLERSYLL--KVQGKVVERPQHMLMRVS 175
+D E K +D+ I K LE YL+ +V G++ E Q + + V+
Sbjct: 121 EDYTEEEFKQ---MDTFIDHDRDMTFSYAAVKQLEGKYLVQNRVTGEIYESAQFLYILVA 177
Query: 176 IGIHKD-----DIDSAIKTYHMMSQRWFTHASPTLFNAGTPRPQLSSCFLV-CMKDDSIE 229
+ + + + Y +S + +P + TP Q SSC L+ C DS++
Sbjct: 178 ACLFSNYPRETRLQYVKRFYDAVSTFKISLPTPIMSGVRTPTRQFSSCVLIEC--GDSLD 235
Query: 230 GIYETLKECAVISKSAGGIGVSVHNIRATGSYIRGTNGTSNGIVPMLRVFNDTARYVDQG 289
I T GIG++ IRA GS IRG G +P + F + QG
Sbjct: 236 SINATSSAIVKYVSQRAGIGINAGRIRALGSPIRGGEAFHTGCIPFYKHFQTAVKSCSQG 295
Query: 290 GGKRKGAFAVYLEPWHADIFEFLNLKKNHGKEEHRARDLFYALWVPDLFMERVQTNGQWS 349
G R GA ++ WH ++ L LK N G E +R R + Y + + L R+ +
Sbjct: 296 G-VRGGAATLFYPMWHLEVESLLVLKNNRGVEGNRVRHMDYGVQINKLMYTRLLKGEDIT 354
Query: 350 LFCPNEASGLADCWGA---EFEKLYTHYEREGKAKKV-VQAQNLWFEILTSQIETGTPYM 405
LF P++ GL D + A EFE+LYT YE++ +K V+A L+ ++ + TG Y+
Sbjct: 355 LFSPSDVPGLYDAFFADQEEFERLYTKYEKDDSIRKQRVKAVELFSLMMQERASTGRIYI 414
Query: 406 LFKDTCNRKSN-QQNLGTIKSSNLCTEIIEYTSPT--------ETAVCNLASIALPRFVR 456
D CN S + ++ SNLC +I T P E A+C L++ L
Sbjct: 415 QNVDHCNTHSPFDPAIAPVRQSNLCLDIALPTKPLNDVNDENGEIALCTLSAFNL----- 469
Query: 457 EKDVPVESHPSRIVGSRGSKNRFFDFEKLAEVTAIVTENLNKIIDVNYYPVETARRSNLR 516
G+ N + ++L E+ + L+ ++D YP+ A+R +
Sbjct: 470 -----------------GAIN---NLDELEELAILAVRALDALLDYQDYPIPAAKRGAMG 509
Query: 517 HRPIGIGVQGLADTFILLGMAFESPEAQQLNKDIFETIYYHALKTSSEIAAKEGPYETYH 576
R +GIGV A G + A L FE I Y+ LK S+E+A ++G ++
Sbjct: 510 RRTLGIGVINFAYYLAKHGKRYSDGSANNLTHKTFEAIQYYLLKASNELAKEQGACPWFN 569
Query: 577 NSPVSKGILQPDMW----NVIPSD--RWDWGVLRDMISKNGVRNSLLVAPMPTASTSQIL 630
+ +KGIL D + + I ++ +DW LR+ I +G+RNS L A MP+ ++SQI
Sbjct: 570 ETTYAKGILPIDTYKKDLDTIANEPLHYDWEALRESIKTHGLRNSTLSALMPSETSSQIS 629
Query: 631 GNNECFEP---YTSNIYSRRVLSGEFVVVNKHLLHDLTEMGIW 670
EP Y S S+ + + V +H LHD E+ +W
Sbjct: 630 NATNGIEPPRGYVSIKASKDGILRQVVPDYEH-LHDAYEL-LW 670
>pdb|7R1R|A Chain A, Ribonucleotide Reductase E441q Mutant R1 Protein From
Escherichia Coli
pdb|7R1R|B Chain B, Ribonucleotide Reductase E441q Mutant R1 Protein From
Escherichia Coli
pdb|7R1R|C Chain C, Ribonucleotide Reductase E441q Mutant R1 Protein From
Escherichia Coli
Length = 761
Score = 223 bits (569), Expect = 3e-58, Method: Compositional matrix adjust.
Identities = 196/703 (27%), Positives = 309/703 (43%), Gaps = 70/703 (9%)
Query: 1 MYVVKRDGRQEAVHFDKITARLKKLSYGLSTEHCDPVLVSQKVCAGVYKGVTTSQLDE-L 59
+ V KRDG E ++ DKI L + GL V + + Y G+ TS + E +
Sbjct: 5 LLVTKRDGSTERINLDKIHRVLDWAAEGLHNVSISQVELRSHI--QFYDGIKTSDIHETI 62
Query: 60 XXXXXXXXXXNHPDYASLAARIAVSNLHKNTKKSFSETIKDMYNHYNE--RSGLKAPLIA 117
+ PDY LAAR+A+ +L K F +Y+H + G +
Sbjct: 63 IKAAADLISRDAPDYQYLAARLAIFHLRKKAYGQFEPPA--LYDHVVKMVEMGKYDNHLL 120
Query: 118 DDIYEIIMKNAACLDSEIIXXXXXXXXXXXXKTLERSYLL--KVQGKVVERPQHMLMRVS 175
+D E K +D+ I K LE YL+ +V G++ E Q + + V+
Sbjct: 121 EDYTEEEFKQ---MDTFIDHDRDMTFSYAAVKQLEGKYLVQNRVTGEIYESAQFLYILVA 177
Query: 176 IGIHKD-----DIDSAIKTYHMMSQRWFTHASPTLFNAGTPRPQLSSCFLV-CMKDDSIE 229
+ + + + Y +S + +P + TP Q SSC L+ C DS++
Sbjct: 178 ACLFSNYPRETRLQYVKRFYDAVSTFKISLPTPIMSGVRTPTRQFSSCVLIEC--GDSLD 235
Query: 230 GIYETLKECAVISKSAGGIGVSVHNIRATGSYIRGTNGTSNGIVPMLRVFNDTARYVDQG 289
I T GIG++ IRA GS IRG G +P + F + QG
Sbjct: 236 SINATSSAIVKYVSQRAGIGINAGRIRALGSPIRGGEAFHTGCIPFYKHFQTAVKSCSQG 295
Query: 290 GGKRKGAFAVYLEPWHADIFEFLNLKKNHGKEEHRARDLFYALWVPDLFMERVQTNGQWS 349
G R GA ++ WH ++ L LK N G E +R R + Y + + L R+ +
Sbjct: 296 G-VRGGAATLFYPMWHLEVESLLVLKNNRGVEGNRVRHMDYGVQINKLMYTRLLKGEDIT 354
Query: 350 LFCPNEASGLADCWGA---EFEKLYTHYEREGKAKKV-VQAQNLWFEILTSQIETGTPYM 405
LF P++ GL D + A EFE+LYT YE++ +K V+A L+ ++ + TG Y+
Sbjct: 355 LFSPSDVPGLYDAFFADQEEFERLYTKYEKDDSIRKQRVKAVELFSLMMQERASTGRIYI 414
Query: 406 LFKDTCNRKSN-QQNLGTIKSSNLCTEIIEYTSPT--------ETAVCNLASIALPRFVR 456
D CN S + ++ SNLC +I T P E A+C L++ L
Sbjct: 415 QNVDHCNTHSPFDPAIAPVRQSNLCLQIALPTKPLNDVNDENGEIALCTLSAFNL----- 469
Query: 457 EKDVPVESHPSRIVGSRGSKNRFFDFEKLAEVTAIVTENLNKIIDVNYYPVETARRSNLR 516
G+ N + ++L E+ + L+ ++D YP+ A+R +
Sbjct: 470 -----------------GAIN---NLDELEELAILAVRALDALLDYQDYPIPAAKRGAMG 509
Query: 517 HRPIGIGVQGLADTFILLGMAFESPEAQQLNKDIFETIYYHALKTSSEIAAKEGPYETYH 576
R +GIGV A G + A L FE I Y+ LK S+E+A ++G ++
Sbjct: 510 RRTLGIGVINFAYYLAKHGKRYSDGSANNLTHKTFEAIQYYLLKASNELAKEQGACPWFN 569
Query: 577 NSPVSKGILQPDMW----NVIPSD--RWDWGVLRDMISKNGVRNSLLVAPMPTASTSQIL 630
+ +KGIL D + + I ++ +DW LR+ I +G+RNS L A MP+ ++SQI
Sbjct: 570 ETTYAKGILPIDTYKKDLDTIANEPLHYDWEALRESIKTHGLRNSTLSALMPSETSSQIS 629
Query: 631 GNNECFEP---YTSNIYSRRVLSGEFVVVNKHLLHDLTEMGIW 670
EP Y S S+ + + V +H LHD E+ +W
Sbjct: 630 NATNGIEPPRGYVSIKASKDGILRQVVPDYEH-LHDAYEL-LW 670
>pdb|5R1R|A Chain A, Ribonucleotide Reductase E441a Mutant R1 Protein From
Escherichia Coli
pdb|5R1R|B Chain B, Ribonucleotide Reductase E441a Mutant R1 Protein From
Escherichia Coli
pdb|5R1R|C Chain C, Ribonucleotide Reductase E441a Mutant R1 Protein From
Escherichia Coli
Length = 761
Score = 222 bits (566), Expect = 5e-58, Method: Compositional matrix adjust.
Identities = 196/703 (27%), Positives = 308/703 (43%), Gaps = 70/703 (9%)
Query: 1 MYVVKRDGRQEAVHFDKITARLKKLSYGLSTEHCDPVLVSQKVCAGVYKGVTTSQLDE-L 59
+ V KRDG E ++ DKI L + GL V + + Y G+ TS + E +
Sbjct: 5 LLVTKRDGSTERINLDKIHRVLDWAAEGLHNVSISQVELRSHI--QFYDGIKTSDIHETI 62
Query: 60 XXXXXXXXXXNHPDYASLAARIAVSNLHKNTKKSFSETIKDMYNHYNE--RSGLKAPLIA 117
+ PDY LAAR+A+ +L K F +Y+H + G +
Sbjct: 63 IKAAADLISRDAPDYQYLAARLAIFHLRKKAYGQFEPPA--LYDHVVKMVEMGKYDNHLL 120
Query: 118 DDIYEIIMKNAACLDSEIIXXXXXXXXXXXXKTLERSYLL--KVQGKVVERPQHMLMRVS 175
+D E K +D+ I K LE YL+ +V G++ E Q + + V+
Sbjct: 121 EDYTEEEFKQ---MDTFIDHDRDMTFSYAAVKQLEGKYLVQNRVTGEIYESAQFLYILVA 177
Query: 176 IGIHKD-----DIDSAIKTYHMMSQRWFTHASPTLFNAGTPRPQLSSCFLV-CMKDDSIE 229
+ + + + Y +S + +P + TP Q SSC L+ C DS++
Sbjct: 178 ACLFSNYPRETRLQYVKRFYDAVSTFKISLPTPIMSGVRTPTRQFSSCVLIEC--GDSLD 235
Query: 230 GIYETLKECAVISKSAGGIGVSVHNIRATGSYIRGTNGTSNGIVPMLRVFNDTARYVDQG 289
I T GIG++ IRA GS IRG G +P + F + QG
Sbjct: 236 SINATSSAIVKYVSQRAGIGINAGRIRALGSPIRGGEAFHTGCIPFYKHFQTAVKSCSQG 295
Query: 290 GGKRKGAFAVYLEPWHADIFEFLNLKKNHGKEEHRARDLFYALWVPDLFMERVQTNGQWS 349
G R GA ++ WH ++ L LK N G E +R R + Y + + L R+ +
Sbjct: 296 G-VRGGAATLFYPMWHLEVESLLVLKNNRGVEGNRVRHMDYGVQINKLMYTRLLKGEDIT 354
Query: 350 LFCPNEASGLADCWGA---EFEKLYTHYEREGKAKKV-VQAQNLWFEILTSQIETGTPYM 405
LF P++ GL D + A EFE+LYT YE++ +K V+A L+ ++ + TG Y+
Sbjct: 355 LFSPSDVPGLYDAFFADQEEFERLYTKYEKDDSIRKQRVKAVELFSLMMQERASTGRIYI 414
Query: 406 LFKDTCNRKSN-QQNLGTIKSSNLCTEIIEYTSPT--------ETAVCNLASIALPRFVR 456
D CN S + ++ SNLC I T P E A+C L++ L
Sbjct: 415 QNVDHCNTHSPFDPAIAPVRQSNLCLAIALPTKPLNDVNDENGEIALCTLSAFNL----- 469
Query: 457 EKDVPVESHPSRIVGSRGSKNRFFDFEKLAEVTAIVTENLNKIIDVNYYPVETARRSNLR 516
G+ N + ++L E+ + L+ ++D YP+ A+R +
Sbjct: 470 -----------------GAIN---NLDELEELAILAVRALDALLDYQDYPIPAAKRGAMG 509
Query: 517 HRPIGIGVQGLADTFILLGMAFESPEAQQLNKDIFETIYYHALKTSSEIAAKEGPYETYH 576
R +GIGV A G + A L FE I Y+ LK S+E+A ++G ++
Sbjct: 510 RRTLGIGVINFAYYLAKHGKRYSDGSANNLTHKTFEAIQYYLLKASNELAKEQGACPWFN 569
Query: 577 NSPVSKGILQPDMW----NVIPSD--RWDWGVLRDMISKNGVRNSLLVAPMPTASTSQIL 630
+ +KGIL D + + I ++ +DW LR+ I +G+RNS L A MP+ ++SQI
Sbjct: 570 ETTYAKGILPIDTYKKDLDTIANEPLHYDWEALRESIKTHGLRNSTLSALMPSETSSQIS 629
Query: 631 GNNECFEP---YTSNIYSRRVLSGEFVVVNKHLLHDLTEMGIW 670
EP Y S S+ + + V +H LHD E+ +W
Sbjct: 630 NATNGIEPPRGYVSIKASKDGILRQVVPDYEH-LHDAYEL-LW 670
>pdb|2XAY|A Chain A, Ribonucleotide Reductase Y730no2y And C439a Modified R1
Subunit Of E. Coli
pdb|2XAY|B Chain B, Ribonucleotide Reductase Y730no2y And C439a Modified R1
Subunit Of E. Coli
pdb|2XAY|C Chain C, Ribonucleotide Reductase Y730no2y And C439a Modified R1
Subunit Of E. Coli
Length = 761
Score = 221 bits (562), Expect = 2e-57, Method: Compositional matrix adjust.
Identities = 196/703 (27%), Positives = 308/703 (43%), Gaps = 70/703 (9%)
Query: 1 MYVVKRDGRQEAVHFDKITARLKKLSYGLSTEHCDPVLVSQKVCAGVYKGVTTSQLDE-L 59
+ V KRDG E ++ DKI L + GL V + + Y G+ TS + E +
Sbjct: 5 LLVTKRDGSTERINLDKIHRVLDWAAEGLHNVSISQVELRSHI--QFYDGIKTSDIHETI 62
Query: 60 XXXXXXXXXXNHPDYASLAARIAVSNLHKNTKKSFSETIKDMYNHYNE--RSGLKAPLIA 117
+ PDY LAAR+A+ +L K F +Y+H + G +
Sbjct: 63 IKAAADLISRDAPDYQYLAARLAIFHLRKKAYGQFEPPA--LYDHVVKMVEMGKYDNHLL 120
Query: 118 DDIYEIIMKNAACLDSEIIXXXXXXXXXXXXKTLERSYLL--KVQGKVVERPQHMLMRVS 175
+D E K +D+ I K LE YL+ +V G++ E Q + + V+
Sbjct: 121 EDYTEEEFKQ---MDTFIDHDRDMTFSYAAVKQLEGKYLVQNRVTGEIYESAQFLYILVA 177
Query: 176 IGIHKD-----DIDSAIKTYHMMSQRWFTHASPTLFNAGTPRPQLSSCFLV-CMKDDSIE 229
+ + + + Y +S + +P + TP Q SSC L+ C DS++
Sbjct: 178 ACLFSNYPRETRLQYVKRFYDAVSTFKISLPTPIMSGVRTPTRQFSSCVLIEC--GDSLD 235
Query: 230 GIYETLKECAVISKSAGGIGVSVHNIRATGSYIRGTNGTSNGIVPMLRVFNDTARYVDQG 289
I T GIG++ IRA GS IRG G +P + F + QG
Sbjct: 236 SINATSSAIVKYVSQRAGIGINAGRIRALGSPIRGGEAFHTGCIPFYKHFQTAVKSCSQG 295
Query: 290 GGKRKGAFAVYLEPWHADIFEFLNLKKNHGKEEHRARDLFYALWVPDLFMERVQTNGQWS 349
G R GA ++ WH ++ L LK N G E +R R + Y + + L R+ +
Sbjct: 296 G-VRGGAATLFYPMWHLEVESLLVLKNNRGVEGNRVRHMDYGVQINKLMYTRLLKGEDIT 354
Query: 350 LFCPNEASGLADCWGA---EFEKLYTHYEREGKAKKV-VQAQNLWFEILTSQIETGTPYM 405
LF P++ GL D + A EFE+LYT YE++ +K V+A L+ ++ + TG Y+
Sbjct: 355 LFSPSDVPGLYDAFFADQEEFERLYTKYEKDDSIRKQRVKAVELFSLMMQERASTGRIYI 414
Query: 406 LFKDTCNRKSN-QQNLGTIKSSNLCTEIIEYTSPT--------ETAVCNLASIALPRFVR 456
D CN S + ++ SNL EI T P E A+C L++ L
Sbjct: 415 QNVDHCNTHSPFDPAIAPVRQSNLALEIALPTKPLNDVNDENGEIALCTLSAFNL----- 469
Query: 457 EKDVPVESHPSRIVGSRGSKNRFFDFEKLAEVTAIVTENLNKIIDVNYYPVETARRSNLR 516
G+ N + ++L E+ + L+ ++D YP+ A+R +
Sbjct: 470 -----------------GAIN---NLDELEELAILAVRALDALLDYQDYPIPAAKRGAMG 509
Query: 517 HRPIGIGVQGLADTFILLGMAFESPEAQQLNKDIFETIYYHALKTSSEIAAKEGPYETYH 576
R +GIGV A G + A L FE I Y+ LK S+E+A ++G ++
Sbjct: 510 RRTLGIGVINFAYYLAKHGKRYSDGSANNLTHKTFEAIQYYLLKASNELAKEQGACPWFN 569
Query: 577 NSPVSKGILQPDMW----NVIPSD--RWDWGVLRDMISKNGVRNSLLVAPMPTASTSQIL 630
+ +KGIL D + + I ++ +DW LR+ I +G+RNS L A MP+ ++SQI
Sbjct: 570 ETTYAKGILPIDTYKKDLDTIANEPLHYDWEALRESIKTHGLRNSTLSALMPSETSSQIS 629
Query: 631 GNNECFEP---YTSNIYSRRVLSGEFVVVNKHLLHDLTEMGIW 670
EP Y S S+ + + V +H LHD E+ +W
Sbjct: 630 NATNGIEPPRGYVSIKASKDGILRQVVPDYEH-LHDAYEL-LW 670
>pdb|2XAZ|A Chain A, Ribonucleotide Reductase Y730no2y And C439s Modified R1
Subunit Of E. Coli
pdb|2XAZ|B Chain B, Ribonucleotide Reductase Y730no2y And C439s Modified R1
Subunit Of E. Coli
pdb|2XAZ|C Chain C, Ribonucleotide Reductase Y730no2y And C439s Modified R1
Subunit Of E. Coli
Length = 761
Score = 220 bits (561), Expect = 2e-57, Method: Compositional matrix adjust.
Identities = 196/703 (27%), Positives = 308/703 (43%), Gaps = 70/703 (9%)
Query: 1 MYVVKRDGRQEAVHFDKITARLKKLSYGLSTEHCDPVLVSQKVCAGVYKGVTTSQLDE-L 59
+ V KRDG E ++ DKI L + GL V + + Y G+ TS + E +
Sbjct: 5 LLVTKRDGSTERINLDKIHRVLDWAAEGLHNVSISQVELRSHI--QFYDGIKTSDIHETI 62
Query: 60 XXXXXXXXXXNHPDYASLAARIAVSNLHKNTKKSFSETIKDMYNHYNE--RSGLKAPLIA 117
+ PDY LAAR+A+ +L K F +Y+H + G +
Sbjct: 63 IKAAADLISRDAPDYQYLAARLAIFHLRKKAYGQFEPPA--LYDHVVKMVEMGKYDNHLL 120
Query: 118 DDIYEIIMKNAACLDSEIIXXXXXXXXXXXXKTLERSYLL--KVQGKVVERPQHMLMRVS 175
+D E K +D+ I K LE YL+ +V G++ E Q + + V+
Sbjct: 121 EDYTEEEFKQ---MDTFIDHDRDMTFSYAAVKQLEGKYLVQNRVTGEIYESAQFLYILVA 177
Query: 176 IGIHKD-----DIDSAIKTYHMMSQRWFTHASPTLFNAGTPRPQLSSCFLV-CMKDDSIE 229
+ + + + Y +S + +P + TP Q SSC L+ C DS++
Sbjct: 178 ACLFSNYPRETRLQYVKRFYDAVSTFKISLPTPIMSGVRTPTRQFSSCVLIEC--GDSLD 235
Query: 230 GIYETLKECAVISKSAGGIGVSVHNIRATGSYIRGTNGTSNGIVPMLRVFNDTARYVDQG 289
I T GIG++ IRA GS IRG G +P + F + QG
Sbjct: 236 SINATSSAIVKYVSQRAGIGINAGRIRALGSPIRGGEAFHTGCIPFYKHFQTAVKSCSQG 295
Query: 290 GGKRKGAFAVYLEPWHADIFEFLNLKKNHGKEEHRARDLFYALWVPDLFMERVQTNGQWS 349
G R GA ++ WH ++ L LK N G E +R R + Y + + L R+ +
Sbjct: 296 G-VRGGAATLFYPMWHLEVESLLVLKNNRGVEGNRVRHMDYGVQINKLMYTRLLKGEDIT 354
Query: 350 LFCPNEASGLADCWGA---EFEKLYTHYEREGKAKKV-VQAQNLWFEILTSQIETGTPYM 405
LF P++ GL D + A EFE+LYT YE++ +K V+A L+ ++ + TG Y+
Sbjct: 355 LFSPSDVPGLYDAFFADQEEFERLYTKYEKDDSIRKQRVKAVELFSLMMQERASTGRIYI 414
Query: 406 LFKDTCNRKSN-QQNLGTIKSSNLCTEIIEYTSPT--------ETAVCNLASIALPRFVR 456
D CN S + ++ SNL EI T P E A+C L++ L
Sbjct: 415 QNVDHCNTHSPFDPAIAPVRQSNLSLEIALPTKPLNDVNDENGEIALCTLSAFNL----- 469
Query: 457 EKDVPVESHPSRIVGSRGSKNRFFDFEKLAEVTAIVTENLNKIIDVNYYPVETARRSNLR 516
G+ N + ++L E+ + L+ ++D YP+ A+R +
Sbjct: 470 -----------------GAIN---NLDELEELAILAVRALDALLDYQDYPIPAAKRGAMG 509
Query: 517 HRPIGIGVQGLADTFILLGMAFESPEAQQLNKDIFETIYYHALKTSSEIAAKEGPYETYH 576
R +GIGV A G + A L FE I Y+ LK S+E+A ++G ++
Sbjct: 510 RRTLGIGVINFAYYLAKHGKRYSDGSANNLTHKTFEAIQYYLLKASNELAKEQGACPWFN 569
Query: 577 NSPVSKGILQPDMW----NVIPSD--RWDWGVLRDMISKNGVRNSLLVAPMPTASTSQIL 630
+ +KGIL D + + I ++ +DW LR+ I +G+RNS L A MP+ ++SQI
Sbjct: 570 ETTYAKGILPIDTYKKDLDTIANEPLHYDWEALRESIKTHGLRNSTLSALMPSETSSQIS 629
Query: 631 GNNECFEP---YTSNIYSRRVLSGEFVVVNKHLLHDLTEMGIW 670
EP Y S S+ + + V +H LHD E+ +W
Sbjct: 630 NATNGIEPPRGYVSIKASKDGILRQVVPDYEH-LHDAYEL-LW 670
>pdb|1XJK|A Chain A, Structural Mechanism Of Allosteric Substrate Specificity
In A Ribonucleotide Reductase: Dgtp-Adp Complex
pdb|1XJK|B Chain B, Structural Mechanism Of Allosteric Substrate Specificity
In A Ribonucleotide Reductase: Dgtp-Adp Complex
Length = 644
Score = 170 bits (430), Expect = 3e-42, Method: Compositional matrix adjust.
Identities = 157/584 (26%), Positives = 253/584 (43%), Gaps = 99/584 (16%)
Query: 190 YHMMSQRWFTHASPTLFNAG---------TPRPQ------------------LSSCFLVC 222
+ ++ R F SPTLFNAG P Q LS+CF+V
Sbjct: 79 FRVLKARLFIPNSPTLFNAGLGVKHDLLWKPIDQMTLEDYEEIYRSRNHLHMLSACFVVP 138
Query: 223 MKDDSIEGIYETLKECAVISKSAGGIGVSVHNIRATGSYIRGTNGTSNGIVPMLRVFNDT 282
+ DSIE I+E +KE A+I+K GG+G + +R GS++ GT+G ++G V + VFN
Sbjct: 139 V-GDSIEEIFEAVKEYALITKVGGGVGSNFSELRPKGSFVAGTHGKASGPVSFMHVFNSA 197
Query: 283 ARYVDQGGGKRKGAFAVYLEPWHADIFEFLNLKKNHGKEEHRARDLFYALWVPDLFMERV 342
V QG +R+GA L H DI EF++ KK + E V + F
Sbjct: 198 ISVVKQGS-RRRGALMGILNINHPDIEEFIDAKKENTGEA-----------VLNFF---- 241
Query: 343 QTNGQWSLFCPNEASGLADCWGAEFEKLYTHYEREGKAKKVVQAQNLWFEILTSQIETGT 402
S+ P + + + + E +H +K V+ + L+ +I T+ ++G
Sbjct: 242 ----NLSVGFPMDKKEILKLYEEDGELELSH--PRSTIRKKVKIRELFRKIATNAWKSGD 295
Query: 403 PYMLFKDTCNRKSNQQNLGTIKSSNLCTEIIEYTSPTETAVCNLASIALPRFVREKDVPV 462
P + F N+ I S+N C EI ++ CNL SI + +F
Sbjct: 296 PGLAFLGEMNKYYPLYPHRKINSTNPCGEI----GLSDYEACNLGSIDVAKFY------- 344
Query: 463 ESHPSRIVGSRGSKNRFFDFEKLAEVTAIVTENLNKIIDVNYYPVETARRSNLRHRPIGI 522
N F D E L E+ I L+ +IDVN +P++ ++ R +G+
Sbjct: 345 -------------NNGFVDLEALQELVQIAVRFLDNVIDVNVFPIDKITKAVKESRRLGL 391
Query: 523 GVQGLADTFILLGMAFESPEAQQLNKDIFETIYYHALKTSSEIAAKEGPYETYHNSPVSK 582
G+ G AD L + + S EA+ ++ I HA +TS E+ ++G N P+ +
Sbjct: 392 GIMGFADLLYKLEIPYNSQEARDFAANLMAFIALHAHRTSYELGKEKG------NFPLLE 445
Query: 583 GILQPDMWNVIP----SDRWDWGVLRDM-ISKNGVRNSLLVAPMPTASTSQILGNNECFE 637
N +P +D + M ++K RN L+ PT S S I + E
Sbjct: 446 ISRYRTEDNFVPFAMGMSNYDDEIREVMKMTKEFRRNVALLTIAPTGSISNIADTSSGLE 505
Query: 638 PYTSNIYSRRVLSGE-----FVVVNKHLLHDLTEMGIWSPTIKNKI---IYDDGSVQKIP 689
P Y+R V + + VN+ L L +P I +I + + GS++ IP
Sbjct: 506 PNFLLAYTRFVTKDDGTKEPLLYVNQVLREKL------NPEILKRIEKELIEKGSLKDIP 559
Query: 690 EIPEELKMIYKTVWEIKQMTLVDMAVDRGCYIDQSQSLNIHMDQ 733
++PE++K ++ +I M + M Y+D + S I+M Q
Sbjct: 560 DVPEKIKKVFVVALDIDPMDHLLMQDAFQRYVDNNISKTINMPQ 603
>pdb|1XJE|A Chain A, Structural Mechanism Of Allosteric Substrate Specificity
In A Ribonucleotide Reductase: Dttp-Gdp Complex
pdb|1XJE|B Chain B, Structural Mechanism Of Allosteric Substrate Specificity
In A Ribonucleotide Reductase: Dttp-Gdp Complex
pdb|1XJN|A Chain A, Structural Mechanism Of Allosteric Substrate Specificity
In A Ribonucleotide Reductase: Datp-Cdp Complex
pdb|1XJN|B Chain B, Structural Mechanism Of Allosteric Substrate Specificity
In A Ribonucleotide Reductase: Datp-Cdp Complex
pdb|1XJN|C Chain C, Structural Mechanism Of Allosteric Substrate Specificity
In A Ribonucleotide Reductase: Datp-Cdp Complex
pdb|1XJN|D Chain D, Structural Mechanism Of Allosteric Substrate Specificity
In A Ribonucleotide Reductase: Datp-Cdp Complex
pdb|1XJF|A Chain A, Structural Mechanism Of Allosteric Substrate Specificity
In A Ribonucleotide Reductase: Datp Complex
pdb|1XJF|B Chain B, Structural Mechanism Of Allosteric Substrate Specificity
In A Ribonucleotide Reductase: Datp Complex
pdb|1XJG|A Chain A, Structural Mechanism Of Allosteric Substrate Specificity
In A Ribonucleotide Reductase: Datp-Udp Complex
pdb|1XJG|B Chain B, Structural Mechanism Of Allosteric Substrate Specificity
In A Ribonucleotide Reductase: Datp-Udp Complex
pdb|1XJJ|A Chain A, Structural Mechanism Of Allosteric Substrate Specificity
In A Ribonucleotide Reductase: Dgtp Complex
pdb|1XJJ|B Chain B, Structural Mechanism Of Allosteric Substrate Specificity
In A Ribonucleotide Reductase: Dgtp Complex
pdb|1XJM|A Chain A, Structural Mechanism Of Allosteric Substrate Specificity
In A Ribonucleotide Reductase: Dttp Complex
pdb|1XJM|B Chain B, Structural Mechanism Of Allosteric Substrate Specificity
In A Ribonucleotide Reductase: Dttp Complex
pdb|3O0N|A Chain A, Thermotoga Maritima Ribonucleotide Reductase, Nrdj, In
Complex With Dttp And Adenosylcobalamin
pdb|3O0N|B Chain B, Thermotoga Maritima Ribonucleotide Reductase, Nrdj, In
Complex With Dttp And Adenosylcobalamin
pdb|3O0O|A Chain A, Thermotoga Maritima Ribonucleotide Reductase, Nrdj, In
Complex With Dttp, Gdp And Adenosylcobalamin
pdb|3O0O|B Chain B, Thermotoga Maritima Ribonucleotide Reductase, Nrdj, In
Complex With Dttp, Gdp And Adenosylcobalamin
pdb|3O0Q|A Chain A, Thermotoga Maritima Ribonucleotide Reductase, Nrdj, In
Complex With Dttp, Gdp And Adenosine
pdb|3O0Q|B Chain B, Thermotoga Maritima Ribonucleotide Reductase, Nrdj, In
Complex With Dttp, Gdp And Adenosine
Length = 644
Score = 169 bits (429), Expect = 4e-42, Method: Compositional matrix adjust.
Identities = 157/584 (26%), Positives = 253/584 (43%), Gaps = 99/584 (16%)
Query: 190 YHMMSQRWFTHASPTLFNAG---------TPRPQ------------------LSSCFLVC 222
+ ++ R F SPTLFNAG P Q LS+CF+V
Sbjct: 79 FRVLKARLFIPNSPTLFNAGLGVKHDLLWKPIDQMTLEDYEEIYRSRNHLHMLSACFVVP 138
Query: 223 MKDDSIEGIYETLKECAVISKSAGGIGVSVHNIRATGSYIRGTNGTSNGIVPMLRVFNDT 282
+ DSIE I+E +KE A+I+K GG+G + +R GS++ GT+G ++G V + VFN
Sbjct: 139 V-GDSIEEIFEAVKEYALITKVGGGVGSNFSELRPKGSFVAGTHGKASGPVSFMHVFNSA 197
Query: 283 ARYVDQGGGKRKGAFAVYLEPWHADIFEFLNLKKNHGKEEHRARDLFYALWVPDLFMERV 342
V QG +R+GA L H DI EF++ KK + E V + F
Sbjct: 198 ISVVKQGS-RRRGALMGILNINHPDIEEFIDAKKENTGEA-----------VLNFF---- 241
Query: 343 QTNGQWSLFCPNEASGLADCWGAEFEKLYTHYEREGKAKKVVQAQNLWFEILTSQIETGT 402
S+ P + + + + E +H +K V+ + L+ +I T+ ++G
Sbjct: 242 ----NLSVGFPMDKKEILKLYEEDGELELSH--PRSTIRKKVKIRELFRKIATNAWKSGD 295
Query: 403 PYMLFKDTCNRKSNQQNLGTIKSSNLCTEIIEYTSPTETAVCNLASIALPRFVREKDVPV 462
P + F N+ I S+N C EI ++ CNL SI + +F
Sbjct: 296 PGLAFLGEMNKYYPLYPHRKINSTNPCGEI----GLSDYEACNLGSIDVAKFY------- 344
Query: 463 ESHPSRIVGSRGSKNRFFDFEKLAEVTAIVTENLNKIIDVNYYPVETARRSNLRHRPIGI 522
N F D E L E+ I L+ +IDVN +P++ ++ R +G+
Sbjct: 345 -------------NNGFVDLEALQELVQIAVRFLDNVIDVNVFPIDKITKAVKESRRLGL 391
Query: 523 GVQGLADTFILLGMAFESPEAQQLNKDIFETIYYHALKTSSEIAAKEGPYETYHNSPVSK 582
G+ G AD L + + S EA+ ++ I HA +TS E+ ++G N P+ +
Sbjct: 392 GIMGFADLLYKLEIPYNSQEARDFAANLMAFIALHAHRTSYELGKEKG------NFPLLE 445
Query: 583 GILQPDMWNVIP----SDRWDWGVLRDM-ISKNGVRNSLLVAPMPTASTSQILGNNECFE 637
N +P +D + M ++K RN L+ PT S S I + E
Sbjct: 446 ISRYRTEDNFVPFAMGMSNYDDEIREVMKMTKEFRRNVALLTIAPTGSISNIADTSSGLE 505
Query: 638 PYTSNIYSRRVLSGE-----FVVVNKHLLHDLTEMGIWSPTIKNKI---IYDDGSVQKIP 689
P Y+R V + + VN+ L L +P I +I + + GS++ IP
Sbjct: 506 PNFLLAYTRFVTKEDGTKEPLLYVNQVLREKL------NPEILKRIEKELIEKGSLKDIP 559
Query: 690 EIPEELKMIYKTVWEIKQMTLVDMAVDRGCYIDQSQSLNIHMDQ 733
++PE++K ++ +I M + M Y+D + S I+M Q
Sbjct: 560 DVPEKIKKVFVVALDIDPMDHLLMQDAFQRYVDNNISKTINMPQ 603
>pdb|1PEM|A Chain A, Ribonucleotide Reductase Protein R1e From Salmonella
Typhimurium
pdb|1PEO|A Chain A, Ribonucleotide Reductase Protein R1e From Salmonella
Typhimurium
pdb|1PEQ|A Chain A, Ribonucleotide Reductase Protein R1e From Salmonella
Typhimurium
pdb|1PEU|A Chain A, Ribonucleotide Reductase Protein R1e From Salmonella
Typhimurium
pdb|2BQ1|E Chain E, Ribonucleotide Reductase Class 1b Holocomplex R1e,R2f From
Salmonella Typhimurium
pdb|2BQ1|F Chain F, Ribonucleotide Reductase Class 1b Holocomplex R1e,R2f From
Salmonella Typhimurium
Length = 714
Score = 164 bits (416), Expect = 1e-40, Method: Compositional matrix adjust.
Identities = 169/656 (25%), Positives = 277/656 (42%), Gaps = 111/656 (16%)
Query: 154 SYLLKV-QGK-VVERPQHMLMRVSIGIHKDDIDSAIK-TYHMMSQRWFTHASPTLFNAG- 209
SY LK GK +E + + V++ + + D A + T M+S R F A+PT N G
Sbjct: 111 SYTLKTFDGKRYLEHFEDRVTMVALTLAQGDETLATQLTDEMLSGR-FQPATPTFLNCGK 169
Query: 210 TPRPQLSSCFLVCMKDDSIEGIYETLKECAVISKSAGGIGVSVHNIRATGSYIRGTNGTS 269
R +L SCFL+ ++D+ +E I + +SK GG+ + N+R G+ I+ S
Sbjct: 170 QQRGELVSCFLLRIEDN-MESIGRAVNSALQLSKRGGGVAFLLSNLREAGAPIKRIENQS 228
Query: 270 NGIVPMLRVFNDTARYVDQGGGKRKGAFAVYLEPWHADIFEFLNLKKNHGKEEHRARDLF 329
+G++P++++ D Y +Q G R+GA AVYL H DI FL+ K+ + E+ R + L
Sbjct: 229 SGVIPVMKMLEDAFSYANQLGA-RQGAGAVYLHAHHPDILRFLDTKRENADEKIRIKTLS 287
Query: 330 YALWVPDLFMERVQTNGQWSLFCPNEASGLADCWGAEFEKL-----YTHYEREGKAKKV- 383
+ +PD+ + N Q +LF P + + +G F + Y + +K
Sbjct: 288 LGVVIPDITFRLAKENAQMALFSPYD---IQRRYGKPFGDIAISERYDELIADPHVRKTY 344
Query: 384 VQAQNLWFEILTSQIETGTPYMLFKDTCNRKSNQQNLGTIKSSNLCTEIIE--------- 434
+ A++ + + Q E+G PY++F+DT NR + G I SNLC+EI++
Sbjct: 345 INARDFFQTLAEIQFESGYPYIMFEDTVNRANPIA--GRINMSNLCSEILQVNSASRYDD 402
Query: 435 ---YTSPTETAVCNLASIALPRFVREKDVPVESHPSRIVGSRGSKNRFFDFEKLAEVTAI 491
YT CNL S+ + + D+ R V TAI
Sbjct: 403 NLDYTHIGHDISCNLGSLNIAHVMDSPDI------GRTVE-----------------TAI 439
Query: 492 VTENLNKIIDVNYY-PVETARRSNLRHRPIGIGVQGLADTFILLGMAFESPEAQQLNKDI 550
L + D+++ V + N IG+G L G+A+ SPEA
Sbjct: 440 --RGLTAVSDMSHIRSVPSIAAGNAASHAIGLGQMNLHGYLAREGIAYGSPEALDFTNLY 497
Query: 551 FETIYYHALKTSSEIAAKEG-PYETYHNSPVSKG-----ILQPDMWN------------- 591
F TI +HA+ TS +A + G + + S + G LQ D W
Sbjct: 498 FYTITWHAVHTSMRLARERGKTFAGFAQSRYASGDYFTQYLQDD-WQPKTAKVRALFARS 556
Query: 592 --VIPSDRWDWGVLRDMISKNGVRNSLLVAPMPTASTSQILGNNECFEPYTSNIYSRRVL 649
+P+ R W LRD + + G+ N L A PT S S I P + I R+
Sbjct: 557 GITLPT-REMWLKLRDDVMRYGIYNQNLQAVPPTGSISYINHATSSIHPIVAKIEIRK-- 613
Query: 650 SGEFVVVNKHLLHDLTEMGIWSPTIKNKIIYDDGSVQKIPEIPEELKMIYKTVWEIKQMT 709
G+ ++ Y P + E +Y+ ++I
Sbjct: 614 EGK----------------------TGRVYY------PAPFMTNENLDMYQDAYDIGPEK 645
Query: 710 LVDMAVDRGCYIDQSQSLNIHM-DQPNFKKVTSLHFRTWSRGLKTGMYYLRSRAAA 764
++D + ++DQ SL + D + + W +G+K+ +YY+R R A
Sbjct: 646 IIDTYAEATRHVDQGLSLTLFFPDTATTRDINKAQIYAWRKGIKS-LYYIRLRQLA 700
>pdb|2BRY|A Chain A, Crystal Structure Of The Native Monooxygenase Domain Of
Mical At 1.45 A Resolution
pdb|2BRY|B Chain B, Crystal Structure Of The Native Monooxygenase Domain Of
Mical At 1.45 A Resolution
pdb|2C4C|A Chain A, Crystal Structure Of The Nadph-Treated Monooxygenase
Domain Of Mical
pdb|2C4C|B Chain B, Crystal Structure Of The Nadph-Treated Monooxygenase
Domain Of Mical
Length = 497
Score = 35.8 bits (81), Expect = 0.10, Method: Compositional matrix adjust.
Identities = 34/93 (36%), Positives = 46/93 (49%), Gaps = 9/93 (9%)
Query: 453 RFVREKDVPVESHPSRIVGSRGSKNRFFDFEKLAEVTAIVTENLNKIIDVNYYPVETARR 512
R V E VP S +RI N+ F F+ L + T I EN+ D +Y V TA++
Sbjct: 256 RTVEETQVPEISGVARIY------NQKF-FQSLLKATGIDLENIVYYKDETHYFVMTAKK 308
Query: 513 SNLRHRPIGIGVQGLADTFILLGMAFESPEAQQ 545
L +G+ Q L++T LLG A PEA Q
Sbjct: 309 QCLLR--LGVLRQDLSETDQLLGKANVVPEALQ 339
>pdb|2BRA|A Chain A, Structure Of N-Terminal Fad Binding Motif Of Mouse Mical
pdb|2BRA|B Chain B, Structure Of N-Terminal Fad Binding Motif Of Mouse Mical
Length = 484
Score = 35.4 bits (80), Expect = 0.12, Method: Compositional matrix adjust.
Identities = 34/93 (36%), Positives = 46/93 (49%), Gaps = 9/93 (9%)
Query: 453 RFVREKDVPVESHPSRIVGSRGSKNRFFDFEKLAEVTAIVTENLNKIIDVNYYPVETARR 512
R V E VP S +RI N+ F F+ L + T I EN+ D +Y V TA++
Sbjct: 248 RTVEETQVPEISGVARIY------NQKF-FQSLLKATGIDLENIVYYKDETHYFVMTAKK 300
Query: 513 SNLRHRPIGIGVQGLADTFILLGMAFESPEAQQ 545
L +G+ Q L++T LLG A PEA Q
Sbjct: 301 QCLLR--LGVLRQDLSETDQLLGKANVVPEALQ 331
>pdb|3US9|A Chain A, Crystal Structure Of The Ncx1 Intracellular Tandem Calcium
Binding Domains(Cbd12)
Length = 295
Score = 33.1 bits (74), Expect = 0.67, Method: Compositional matrix adjust.
Identities = 51/203 (25%), Positives = 87/203 (42%), Gaps = 32/203 (15%)
Query: 160 QGKVVERPQHMLMRVSIGIHKDDIDSAIKTY--HMMSQRWFTHAS----------PTLFN 207
+G VV +P + +GI DDI K + H+ + + + AS L
Sbjct: 64 EGTVVFKPGETQKEIRVGIIDDDIFEEDKNFLVHLSNVKVSSEASEDGILEANHVSALAC 123
Query: 208 AGTPRPQLSSCFLVCMKDDSIEGIYETLKECAVISKSAGGIGVSVHNIRATGSYIRGTNG 267
G+P S V + DD GI+ + +S+S G + V V +R +G+ RG
Sbjct: 124 LGSP-----STATVTIFDDDHAGIFTFEEPVTHVSESIGIMEVKV--LRTSGA--RG--- 171
Query: 268 TSNGIVPMLRVFNDTARYVDQGGGKRKGAFAVYLEPWHADIFEFLNLKKNHGKEEHRARD 327
N IVP + TAR GGG+ LE + +I + +++K +E + +
Sbjct: 172 --NVIVP-YKTIEGTAR----GGGEDFEDTCGELEFQNDEIVKTISVKVIDDEEYEKNKT 224
Query: 328 LFYALWVPDLFMERVQTNGQWSL 350
F + P L +E + G +++
Sbjct: 225 FFLEIGEPRL-VEMSEKKGGFTI 246
>pdb|2P8U|A Chain A, Crystal Structure Of Human 3-Hydroxy-3-Methylglutaryl Coa
Synthase I
pdb|2P8U|B Chain B, Crystal Structure Of Human 3-Hydroxy-3-Methylglutaryl Coa
Synthase I
Length = 478
Score = 32.7 bits (73), Expect = 0.85, Method: Compositional matrix adjust.
Identities = 31/129 (24%), Positives = 53/129 (41%), Gaps = 15/129 (11%)
Query: 295 GAFAVYLEPWHADIFEFLNLKKNHGKEEHRARDLFYALWVPDLFMERVQTNGQWSLFCPN 354
GA A+ + P IFE L+ H + Y + PD+ E +G+ S+ C
Sbjct: 183 GAVALLIGPNAPLIFE-RGLRGTHMQHA-------YDFYKPDMLSEYPIVDGKLSIQC-- 232
Query: 355 EASGLADCWGAEFEKLYTHYEREGKAKKVVQAQNLWFEILTSQ----IETGTPYMLFKDT 410
S L C+ +K++ +++EG K + F I S ++ ML D
Sbjct: 233 YLSALDRCYSVYCKKIHAQWQKEGNDKDFT-LNDFGFMIFHSPYCKLVQKSLARMLLNDF 291
Query: 411 CNRKSNQQN 419
N ++ +N
Sbjct: 292 LNDQNRDKN 300
>pdb|2WH7|A Chain A, The Partial Structure Of A Group A Streptpcoccal Phage-
Encoded Tail Fibre Hyaluronate Lyase Hylp2
Length = 178
Score = 29.3 bits (64), Expect = 9.0, Method: Composition-based stats.
Identities = 19/52 (36%), Positives = 26/52 (50%), Gaps = 6/52 (11%)
Query: 240 VISKSAGGIGVSVHNIRATGSYIRGTNGTSNGIVPMLRVFNDTARYVDQGGG 291
++ K GG G + A G YI T+GT+ G + +R ND YV GG
Sbjct: 87 IVKKQKGGKGTA-----AQGIYINSTSGTT-GKLLRIRNLNDDKFYVKPDGG 132
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.318 0.134 0.400
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 23,707,460
Number of Sequences: 62578
Number of extensions: 985515
Number of successful extensions: 2401
Number of sequences better than 100.0: 29
Number of HSP's better than 100.0 without gapping: 23
Number of HSP's successfully gapped in prelim test: 6
Number of HSP's that attempted gapping in prelim test: 2232
Number of HSP's gapped (non-prelim): 34
length of query: 811
length of database: 14,973,337
effective HSP length: 107
effective length of query: 704
effective length of database: 8,277,491
effective search space: 5827353664
effective search space used: 5827353664
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 56 (26.2 bits)