BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 003561
(811 letters)
Database: swissprot
539,616 sequences; 191,569,459 total letters
Searching..................................................done
>sp|Q9SJ20|RIR1_ARATH Ribonucleoside-diphosphate reductase large subunit OS=Arabidopsis
thaliana GN=RNR1 PE=1 SV=1
Length = 816
Score = 1520 bits (3935), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 711/816 (87%), Positives = 766/816 (93%), Gaps = 5/816 (0%)
Query: 1 MYVVKRDGRQEAVHFDKITARLKKLSYGLSTEHCDPVLVSQKVCAGVYKGVTTSQLDELA 60
MYVVKRDGRQE VHFDKITARLKKLSYGLS++HCDPVLV+QKVCAGVYKGVTTSQLDELA
Sbjct: 1 MYVVKRDGRQETVHFDKITARLKKLSYGLSSDHCDPVLVAQKVCAGVYKGVTTSQLDELA 60
Query: 61 AETAAAMTTNHPDYASLAARIAVSNLHKNTKKSFSETIKDMYNHYNERSGLKAPLIADDI 120
AETAAAMT NHPDYASLAARIAVSNLHKNTKKSFSETIKDM+ H N+RSGLK+PLIADD+
Sbjct: 61 AETAAAMTCNHPDYASLAARIAVSNLHKNTKKSFSETIKDMFYHVNDRSGLKSPLIADDV 120
Query: 121 YEIIMKNAACLDSEIIYDRDFDYDYFGFKTLERSYLLKVQGKVVERPQHMLMRVSIGIHK 180
+EIIM+NAA LDSEIIYDRDF+YDYFGFKTLERSYLLKVQG VVERPQHMLMRV++GIHK
Sbjct: 121 FEIIMQNAARLDSEIIYDRDFEYDYFGFKTLERSYLLKVQGTVVERPQHMLMRVAVGIHK 180
Query: 181 DDIDSAIKTYHMMSQRWFTHASPTLFNAGTPRPQLSSCFLVCMKDDSIEGIYETLKECAV 240
DDIDS I+TYH+MSQRWFTHASPTLFNAGTPRPQLSSCFLVCMKDDSIEGIYETLKECAV
Sbjct: 181 DDIDSVIQTYHLMSQRWFTHASPTLFNAGTPRPQLSSCFLVCMKDDSIEGIYETLKECAV 240
Query: 241 ISKSAGGIGVSVHNIRATGSYIRGTNGTSNGIVPMLRVFNDTARYVDQGGGKRKGAFAVY 300
ISKSAGGIGVSVHNIRATGSYIRGTNGTSNGIVPMLRVFNDTARYVDQGGGKRKGAFAVY
Sbjct: 241 ISKSAGGIGVSVHNIRATGSYIRGTNGTSNGIVPMLRVFNDTARYVDQGGGKRKGAFAVY 300
Query: 301 LEPWHADIFEFLNLKKNHGKEEHRARDLFYALWVPDLFMERVQTNGQWSLFCPNEASGLA 360
LEPWHAD++EFL L+KNHGKEEHRARDLFYALW+PDLFMERVQ NGQWSLFCPNEA GLA
Sbjct: 301 LEPWHADVYEFLELRKNHGKEEHRARDLFYALWLPDLFMERVQNNGQWSLFCPNEAPGLA 360
Query: 361 DCWGAEFEKLYTHYEREGKAKKVVQAQNLWFEILTSQIETGTPYMLFKDTCNRKSNQQNL 420
DCWGAEFE LYT YEREGKAKKVVQAQ LW+EILTSQ+ETGTPYMLFKD+CNRKSNQQNL
Sbjct: 361 DCWGAEFETLYTKYEREGKAKKVVQAQQLWYEILTSQVETGTPYMLFKDSCNRKSNQQNL 420
Query: 421 GTIKSSNLCTEIIEYTSPTETAVCNLASIALPRFVREKDVPVESHPSRIVGSRGSKNRFF 480
GTIKSSNLCTEIIEYTSPTETAVCNLASIALPRFVREK VP++SHP ++ GS SKNR+F
Sbjct: 421 GTIKSSNLCTEIIEYTSPTETAVCNLASIALPRFVREKGVPLDSHPPKLAGSLDSKNRYF 480
Query: 481 DFEKLAEVTAIVTENLNKIIDVNYYPVETARRSNLRHRPIGIGVQGLADTFILLGMAFES 540
DFEKLAEVTA VT NLNKIIDVNYYPVETA+ SN+RHRPIGIGVQGLAD FILLGM F+S
Sbjct: 481 DFEKLAEVTATVTVNLNKIIDVNYYPVETAKTSNMRHRPIGIGVQGLADAFILLGMPFDS 540
Query: 541 PEAQQLNKDIFETIYYHALKTSSEIAAKEGPYETYHNSPVSKGILQPDMWNVIPSDRWDW 600
PEAQQLNKDIFETIYYHALK S+E+AA+ GPYETY SPVSKGILQPDMWNVIPSDRWDW
Sbjct: 541 PEAQQLNKDIFETIYYHALKASTELAARLGPYETYAGSPVSKGILQPDMWNVIPSDRWDW 600
Query: 601 GVLRDMISKNGVRNSLLVAPMPTASTSQILGNNECFEPYTSNIYSRRVLSGEFVVVNKHL 660
VLRDMISKNGVRNSLLVAPMPTASTSQILGNNECFEPYTSNIYSRRVLSGEFVVVNKHL
Sbjct: 601 AVLRDMISKNGVRNSLLVAPMPTASTSQILGNNECFEPYTSNIYSRRVLSGEFVVVNKHL 660
Query: 661 LHDLTEMGIWSPTIKNKIIYDDGSVQKIPEIPEELKMIYKTVWEIKQMTLVDMAVDRGCY 720
LHDLT+MG+W+PT+KNK+I ++GS+ + EIP++LK IY+TVWEIKQ T+VDMA DRGCY
Sbjct: 661 LHDLTDMGLWTPTLKNKLINENGSIVNVAEIPDDLKAIYRTVWEIKQRTVVDMAADRGCY 720
Query: 721 IDQSQSLNIHMDQPNFKKVTSLHFRTWSRGLKTGMYYLRSRAAADAIKFTVDTSVFKEKP 780
IDQSQSLNIHMD+PNF K+TSLHF TW +GLKTGMYYLRSRAAADAIKFTVDT++ KEKP
Sbjct: 721 IDQSQSLNIHMDKPNFAKLTSLHFYTWKKGLKTGMYYLRSRAAADAIKFTVDTAMLKEKP 780
Query: 781 -----EKPELVVDDETKMAQVVCSLTNREECMACGS 811
+K D+ETK+AQ+VCSLTN EEC+ACGS
Sbjct: 781 SVAEGDKEVEEEDNETKLAQMVCSLTNPEECLACGS 816
>sp|P07742|RIR1_MOUSE Ribonucleoside-diphosphate reductase large subunit OS=Mus musculus
GN=Rrm1 PE=1 SV=2
Length = 792
Score = 1125 bits (2910), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 539/811 (66%), Positives = 650/811 (80%), Gaps = 19/811 (2%)
Query: 1 MYVVKRDGRQEAVHFDKITARLKKLSYGLSTEHCDPVLVSQKVCAGVYKGVTTSQLDELA 60
M+V+KRDGRQE V FDKIT+R++KL YGL+ + DP ++ KV G+Y GVTT +LD LA
Sbjct: 1 MHVIKRDGRQERVMFDKITSRIQKLCYGLNMDFVDPAQITMKVIQGLYSGVTTVELDTLA 60
Query: 61 AETAAAMTTNHPDYASLAARIAVSNLHKNTKKSFSETIKDMYNHYNERSGLKAPLIADDI 120
AETAA +TT HPDYA LAARIAVSNLHK TKK FS+ ++D+YN+ N +G +P++A
Sbjct: 61 AETAATLTTKHPDYAILAARIAVSNLHKETKKVFSDVMEDLYNYINPHNGRHSPMVASST 120
Query: 121 YEIIMKNAACLDSEIIYDRDFDYDYFGFKTLERSYLLKVQGKVVERPQHMLMRVSIGIHK 180
+I+M N L+S IIYDRDF Y+YFGFKTLERSYLLK+ GKV ERPQHMLMRVS+GIHK
Sbjct: 121 LDIVMANKDRLNSAIIYDRDFSYNYFGFKTLERSYLLKINGKVAERPQHMLMRVSVGIHK 180
Query: 181 DDIDSAIKTYHMMSQRWFTHASPTLFNAGTPRPQLSSCFLVCMKDDSIEGIYETLKECAV 240
+DID+AI+TY+++S++WFTHASPTLFNAGT RPQLSSCFL+ MKDDSIEGIY+TLK+CA+
Sbjct: 181 EDIDAAIETYNLLSEKWFTHASPTLFNAGTNRPQLSSCFLLSMKDDSIEGIYDTLKQCAL 240
Query: 241 ISKSAGGIGVSVHNIRATGSYIRGTNGTSNGIVPMLRVFNDTARYVDQGGGKRKGAFAVY 300
ISKSAGGIGV+V IRATGSYI GTNG SNG+VPMLRV+N+TARYVDQGG KR GAFA+Y
Sbjct: 241 ISKSAGGIGVAVSCIRATGSYIAGTNGNSNGLVPMLRVYNNTARYVDQGGNKRPGAFAIY 300
Query: 301 LEPWHADIFEFLNLKKNHGKEEHRARDLFYALWVPDLFMERVQTNGQWSLFCPNEASGLA 360
LEPWH DIFEFL+LKKN GKEE RARDLF+ALW+PDLFM+RV+TN WSL CPNE GL
Sbjct: 301 LEPWHLDIFEFLDLKKNTGKEEQRARDLFFALWIPDLFMKRVETNQDWSLMCPNECPGLD 360
Query: 361 DCWGAEFEKLYTHYEREGKAKKVVQAQNLWFEILTSQIETGTPYMLFKDTCNRKSNQQNL 420
+ WG EFEKLY YE++G+ +KVV+AQ LW+ I+ SQ ETGTPYML+KD+CNRKSNQQNL
Sbjct: 361 EVWGEEFEKLYESYEKQGRVRKVVKAQQLWYAIIESQTETGTPYMLYKDSCNRKSNQQNL 420
Query: 421 GTIKSSNLCTEIIEYTSPTETAVCNLASIALPRFVREKDVPVESHPSRIVGSRGSKNRFF 480
GTIK SNLCTEI+EYTS E AVCNLAS+AL +V + +
Sbjct: 421 GTIKCSNLCTEIVEYTSKDEVAVCNLASLALNMYV-------------------TPEHTY 461
Query: 481 DFEKLAEVTAIVTENLNKIIDVNYYPVETARRSNLRHRPIGIGVQGLADTFILLGMAFES 540
DFEKLAEVT ++ NLNKIID+NYYP+ A SN RHRPIGIGVQGLAD FIL+ FES
Sbjct: 462 DFEKLAEVTKVIVRNLNKIIDINYYPIPEAHLSNKRHRPIGIGVQGLADAFILMRYPFES 521
Query: 541 PEAQQLNKDIFETIYYHALKTSSEIAAKEGPYETYHNSPVSKGILQPDMWNVIPSDRWDW 600
PEAQ LNK IFETIYY AL+ S E+A + GPYETY SPVSKGILQ DMWNV P+D WDW
Sbjct: 522 PEAQLLNKQIFETIYYGALEASCELAKEYGPYETYEGSPVSKGILQYDMWNVAPTDLWDW 581
Query: 601 GVLRDMISKNGVRNSLLVAPMPTASTSQILGNNECFEPYTSNIYSRRVLSGEFVVVNKHL 660
L++ I+K G+RNSLL+APMPTAST+QILGNNE EPYTSNIY+RRVLSGEF +VN HL
Sbjct: 582 KPLKEKIAKYGIRNSLLIAPMPTASTAQILGNNESIEPYTSNIYTRRVLSGEFQIVNPHL 641
Query: 661 LHDLTEMGIWSPTIKNKIIYDDGSVQKIPEIPEELKMIYKTVWEIKQMTLVDMAVDRGCY 720
L DLTE G+W+ +KN+II +GS+Q IPEIP++LK +YKTVWEI Q T++ MA +RG +
Sbjct: 642 LKDLTERGLWNEEMKNQIIACNGSIQSIPEIPDDLKQLYKTVWEISQKTVLKMAAERGAF 701
Query: 721 IDQSQSLNIHMDQPNFKKVTSLHFRTWSRGLKTGMYYLRSRAAADAIKFTVDTSVFKEKP 780
IDQSQSLNIH+ +PN+ K+TS+HF W +GLKTGMYYLR+R AA+ I+FT++ K+K
Sbjct: 702 IDQSQSLNIHIAEPNYGKLTSMHFYGWKQGLKTGMYYLRTRPAANPIQFTLNKEKLKDKE 761
Query: 781 EKPELVVDDETKMAQVVCSLTNREECMACGS 811
+ + + E A +VCSL NREEC+ CGS
Sbjct: 762 KALKEEEEKERNTAAMVCSLENREECLMCGS 792
>sp|P23921|RIR1_HUMAN Ribonucleoside-diphosphate reductase large subunit OS=Homo sapiens
GN=RRM1 PE=1 SV=1
Length = 792
Score = 1122 bits (2901), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 538/811 (66%), Positives = 650/811 (80%), Gaps = 19/811 (2%)
Query: 1 MYVVKRDGRQEAVHFDKITARLKKLSYGLSTEHCDPVLVSQKVCAGVYKGVTTSQLDELA 60
M+V+KRDGRQE V FDKIT+R++KL YGL+ + DP ++ KV G+Y GVTT +LD LA
Sbjct: 1 MHVIKRDGRQERVMFDKITSRIQKLCYGLNMDFVDPAQITMKVIQGLYSGVTTVELDTLA 60
Query: 61 AETAAAMTTNHPDYASLAARIAVSNLHKNTKKSFSETIKDMYNHYNERSGLKAPLIADDI 120
AETAA +TT HPDYA LAARIAVSNLHK TKK FS+ ++D+YN+ N +G +P++A
Sbjct: 61 AETAATLTTKHPDYAILAARIAVSNLHKETKKVFSDVMEDLYNYINPHNGKHSPMVAKST 120
Query: 121 YEIIMKNAACLDSEIIYDRDFDYDYFGFKTLERSYLLKVQGKVVERPQHMLMRVSIGIHK 180
+I++ N L+S IIYDRDF Y+YFGFKTLERSYLLK+ GKV ERPQHMLMRVS+GIHK
Sbjct: 121 LDIVLANKDRLNSAIIYDRDFSYNYFGFKTLERSYLLKINGKVAERPQHMLMRVSVGIHK 180
Query: 181 DDIDSAIKTYHMMSQRWFTHASPTLFNAGTPRPQLSSCFLVCMKDDSIEGIYETLKECAV 240
+DID+AI+TY+++S+RWFTHASPTLFNAGT RPQLSSCFL+ MKDDSIEGIY+TLK+CA+
Sbjct: 181 EDIDAAIETYNLLSERWFTHASPTLFNAGTNRPQLSSCFLLSMKDDSIEGIYDTLKQCAL 240
Query: 241 ISKSAGGIGVSVHNIRATGSYIRGTNGTSNGIVPMLRVFNDTARYVDQGGGKRKGAFAVY 300
ISKSAGGIGV+V IRATGSYI GTNG SNG+VPMLRV+N+TARYVDQGG KR GAFA+Y
Sbjct: 241 ISKSAGGIGVAVSCIRATGSYIAGTNGNSNGLVPMLRVYNNTARYVDQGGNKRPGAFAIY 300
Query: 301 LEPWHADIFEFLNLKKNHGKEEHRARDLFYALWVPDLFMERVQTNGQWSLFCPNEASGLA 360
LEPWH DIFEFL+LKKN GKEE RARDLF+ALW+PDLFM+RV+TN WSL CPNE GL
Sbjct: 301 LEPWHLDIFEFLDLKKNTGKEEQRARDLFFALWIPDLFMKRVETNQDWSLMCPNECPGLD 360
Query: 361 DCWGAEFEKLYTHYEREGKAKKVVQAQNLWFEILTSQIETGTPYMLFKDTCNRKSNQQNL 420
+ WG EFEKLY YE++G+ +KVV+AQ LW+ I+ SQ ETGTPYML+KD+CNRKSNQQNL
Sbjct: 361 EVWGEEFEKLYASYEKQGRVRKVVKAQQLWYAIIESQTETGTPYMLYKDSCNRKSNQQNL 420
Query: 421 GTIKSSNLCTEIIEYTSPTETAVCNLASIALPRFVREKDVPVESHPSRIVGSRGSKNRFF 480
GTIK SNLCTEI+EYTS E AVCNLAS+AL +V + +
Sbjct: 421 GTIKCSNLCTEIVEYTSKDEVAVCNLASLALNMYV-------------------TSEHTY 461
Query: 481 DFEKLAEVTAIVTENLNKIIDVNYYPVETARRSNLRHRPIGIGVQGLADTFILLGMAFES 540
DF+KLAEVT +V NLNKIID+NYYPV A SN RHRPIGIGVQGLAD FIL+ FES
Sbjct: 462 DFKKLAEVTKVVVRNLNKIIDINYYPVPEACLSNKRHRPIGIGVQGLADAFILMRYPFES 521
Query: 541 PEAQQLNKDIFETIYYHALKTSSEIAAKEGPYETYHNSPVSKGILQPDMWNVIPSDRWDW 600
EAQ LNK IFETIYY AL+ S ++A ++GPYETY SPVSKGILQ DMWNV P+D WDW
Sbjct: 522 AEAQLLNKQIFETIYYGALEASCDLAKEQGPYETYEGSPVSKGILQYDMWNVTPTDLWDW 581
Query: 601 GVLRDMISKNGVRNSLLVAPMPTASTSQILGNNECFEPYTSNIYSRRVLSGEFVVVNKHL 660
VL++ I+K G+RNSLL+APMPTAST+QILGNNE EPYTSNIY+RRVLSGEF +VN HL
Sbjct: 582 KVLKEKIAKYGIRNSLLIAPMPTASTAQILGNNESIEPYTSNIYTRRVLSGEFQIVNPHL 641
Query: 661 LHDLTEMGIWSPTIKNKIIYDDGSVQKIPEIPEELKMIYKTVWEIKQMTLVDMAVDRGCY 720
L DLTE G+W +KN+II +GS+Q IPEIP++LK +YKTVWEI Q T++ MA +RG +
Sbjct: 642 LKDLTERGLWHEEMKNQIIACNGSIQSIPEIPDDLKQLYKTVWEISQKTVLKMAAERGAF 701
Query: 721 IDQSQSLNIHMDQPNFKKVTSLHFRTWSRGLKTGMYYLRSRAAADAIKFTVDTSVFKEKP 780
IDQSQSLNIH+ +PN+ K+TS+HF W +GLKTGMYYLR+R AA+ I+FT++ K+K
Sbjct: 702 IDQSQSLNIHIAEPNYGKLTSMHFYGWKQGLKTGMYYLRTRPAANPIQFTLNKEKLKDKE 761
Query: 781 EKPELVVDDETKMAQVVCSLTNREECMACGS 811
+ + + E A +VCSL NR+EC+ CGS
Sbjct: 762 KVSKEEEEKERNTAAMVCSLENRDECLMCGS 792
>sp|Q5R919|RIR1_PONAB Ribonucleoside-diphosphate reductase large subunit OS=Pongo abelii
GN=RRM1 PE=2 SV=1
Length = 792
Score = 1117 bits (2888), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 535/811 (65%), Positives = 649/811 (80%), Gaps = 19/811 (2%)
Query: 1 MYVVKRDGRQEAVHFDKITARLKKLSYGLSTEHCDPVLVSQKVCAGVYKGVTTSQLDELA 60
M+V+KRDGRQE V FDKIT+R++KL YGL+ + DP ++ KV G+Y GVTT +LD LA
Sbjct: 1 MHVIKRDGRQERVMFDKITSRIQKLCYGLNMDFVDPAQITMKVIQGLYSGVTTVELDTLA 60
Query: 61 AETAAAMTTNHPDYASLAARIAVSNLHKNTKKSFSETIKDMYNHYNERSGLKAPLIADDI 120
AETAA +TT HPDYA LAARIAVSNLHK KK FS+ ++D+YN+ N +G +P++A
Sbjct: 61 AETAATLTTKHPDYAILAARIAVSNLHKEAKKVFSDVMEDLYNYINPHNGKHSPMVAKST 120
Query: 121 YEIIMKNAACLDSEIIYDRDFDYDYFGFKTLERSYLLKVQGKVVERPQHMLMRVSIGIHK 180
+I++ N L+S IIYDRDF Y+YFGFKTLERSYLLK+ GKV ERPQHMLMRVS+GIHK
Sbjct: 121 LDIVLANKDRLNSAIIYDRDFSYNYFGFKTLERSYLLKINGKVAERPQHMLMRVSVGIHK 180
Query: 181 DDIDSAIKTYHMMSQRWFTHASPTLFNAGTPRPQLSSCFLVCMKDDSIEGIYETLKECAV 240
+DID+AI+TY+++S+RWFTHASPTLFNAGT RPQLSSCFL+ MKDDSIEGIY+TLK+CA+
Sbjct: 181 EDIDAAIETYNLLSERWFTHASPTLFNAGTNRPQLSSCFLLSMKDDSIEGIYDTLKQCAL 240
Query: 241 ISKSAGGIGVSVHNIRATGSYIRGTNGTSNGIVPMLRVFNDTARYVDQGGGKRKGAFAVY 300
ISKSAGGIGV+V IRATGSYI GTNG SNG+VPMLRV+N+TARYVDQGG KR GAFA+Y
Sbjct: 241 ISKSAGGIGVAVSCIRATGSYIAGTNGNSNGLVPMLRVYNNTARYVDQGGNKRPGAFAIY 300
Query: 301 LEPWHADIFEFLNLKKNHGKEEHRARDLFYALWVPDLFMERVQTNGQWSLFCPNEASGLA 360
LEPWH DIFEFL+LKKN GKEE RARDLF+ALW+PDLFM+RV+TN WSL CPNE GL
Sbjct: 301 LEPWHLDIFEFLDLKKNTGKEEQRARDLFFALWIPDLFMKRVETNQDWSLMCPNECPGLD 360
Query: 361 DCWGAEFEKLYTHYEREGKAKKVVQAQNLWFEILTSQIETGTPYMLFKDTCNRKSNQQNL 420
+ WG EFEKLY YE++G+ +KVV+AQ LW+ I+ SQ ETGTPYML+KD+CNRKSNQQNL
Sbjct: 361 EVWGEEFEKLYASYEKQGRVRKVVKAQQLWYAIIESQTETGTPYMLYKDSCNRKSNQQNL 420
Query: 421 GTIKSSNLCTEIIEYTSPTETAVCNLASIALPRFVREKDVPVESHPSRIVGSRGSKNRFF 480
GTIK S+LCTEI+EYTS E AVCNLAS+AL +V + +
Sbjct: 421 GTIKCSSLCTEIVEYTSKDEVAVCNLASLALNMYV-------------------TSEHTY 461
Query: 481 DFEKLAEVTAIVTENLNKIIDVNYYPVETARRSNLRHRPIGIGVQGLADTFILLGMAFES 540
DF+KLAEVT +V NLNKIID+NYYPV A SN RHRPIGIGVQGLAD FIL+ FES
Sbjct: 462 DFKKLAEVTKVVVRNLNKIIDINYYPVPEACLSNKRHRPIGIGVQGLADAFILMRYPFES 521
Query: 541 PEAQQLNKDIFETIYYHALKTSSEIAAKEGPYETYHNSPVSKGILQPDMWNVIPSDRWDW 600
EAQ LNK IFETIYY AL+ S ++A ++GPYETY SPVSKGILQ DMWNV P+D WDW
Sbjct: 522 AEAQLLNKQIFETIYYGALEASCDLAKEQGPYETYEGSPVSKGILQYDMWNVTPTDLWDW 581
Query: 601 GVLRDMISKNGVRNSLLVAPMPTASTSQILGNNECFEPYTSNIYSRRVLSGEFVVVNKHL 660
+L++ I+K G+RNSLL+APMPTAST+QILGNNE EPYTSNIY+RRVLSGEF +VN HL
Sbjct: 582 KLLKEKIAKYGIRNSLLIAPMPTASTAQILGNNESIEPYTSNIYTRRVLSGEFQIVNPHL 641
Query: 661 LHDLTEMGIWSPTIKNKIIYDDGSVQKIPEIPEELKMIYKTVWEIKQMTLVDMAVDRGCY 720
L DLTE G+W +KN+II +GS+Q IPEIP++LK +YKTVWEI Q T++ MA +RG +
Sbjct: 642 LKDLTERGLWHEEMKNQIIACNGSIQSIPEIPDDLKQLYKTVWEISQKTVLKMAAERGAF 701
Query: 721 IDQSQSLNIHMDQPNFKKVTSLHFRTWSRGLKTGMYYLRSRAAADAIKFTVDTSVFKEKP 780
IDQSQSLNIH+ +PN+ K+TS+HF W +GLKTGMYYLR+R AA+ I+FT++ K+K
Sbjct: 702 IDQSQSLNIHIAEPNYGKLTSMHFYGWKQGLKTGMYYLRTRPAANPIQFTLNKEKLKDKE 761
Query: 781 EKPELVVDDETKMAQVVCSLTNREECMACGS 811
+ + + E A +VCSL NR+EC+ CGS
Sbjct: 762 KVSKEEEEKERNTAAMVCSLENRDECLMCGS 792
>sp|P79732|RIR1_DANRE Ribonucleoside-diphosphate reductase large subunit OS=Danio rerio
GN=rrm1 PE=2 SV=1
Length = 794
Score = 1114 bits (2882), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 535/814 (65%), Positives = 644/814 (79%), Gaps = 23/814 (2%)
Query: 1 MYVVKRDGRQEAVHFDKITARLKKLSYGLSTEHCDPVLVSQKVCAGVYKGVTTSQLDELA 60
M+V+KRDG QE V FDKIT+R++KL YGL+++ DP ++ KV G+Y GVTT +LD LA
Sbjct: 1 MHVIKRDGGQEGVMFDKITSRIQKLCYGLNSDFVDPTQITMKVIQGLYSGVTTVELDTLA 60
Query: 61 AETAAAMTTNHPDYASLAARIAVSNLHKNTKKSFSETIKDMYNHYNERSGLKAPLIADDI 120
AETAA TT HPDYA LAARIAVSNLHK TKK FSE ++D+YN+ N + +P+I+ +
Sbjct: 61 AETAATSTTKHPDYAILAARIAVSNLHKETKKVFSEVMEDLYNYVNPLNSRHSPMISKET 120
Query: 121 YEIIMKNAACLDSEIIYDRDFDYDYFGFKTLERSYLLKVQGKVVERPQHMLMRVSIGIHK 180
+I++ N L+S IIYDRDF Y++FGFKTLERSYLLK+ GKV ERPQHMLMRVS+GIHK
Sbjct: 121 LDIVLANKDRLNSAIIYDRDFSYNFFGFKTLERSYLLKINGKVAERPQHMLMRVSVGIHK 180
Query: 181 DDIDSAIKTYHMMSQRWFTHASPTLFNAGTPRPQLSSCFLVCMKDDSIEGIYETLKECAV 240
+DI +AI+TY+++S++WFTHASPTLFNAGT RPQLSSCFL+ MKDDSIEGIY+TLK+CA+
Sbjct: 181 EDIAAAIETYNLLSEKWFTHASPTLFNAGTNRPQLSSCFLLAMKDDSIEGIYDTLKQCAL 240
Query: 241 ISKSAGGIGVSVHNIRATGSYIRGTNGTSNGIVPMLRVFNDTARYVDQGGGKRKGAFAVY 300
ISKSAGGIGV+V IRATG YI GTNG SNG+VPMLRV N+TARYVDQGG KR GAFA+Y
Sbjct: 241 ISKSAGGIGVAVSCIRATGRYIAGTNGNSNGLVPMLRVNNNTARYVDQGGNKRPGAFAMY 300
Query: 301 LEPWHADIFEFLNLKKNHGKEEHRARDLFYALWVPDLFMERVQTNGQWSLFCPNEASGLA 360
LEPWH DIF+FL LKKN GKEE RARDLFYALW+PDLFM+RV+TNG WSL CPN+ GL
Sbjct: 301 LEPWHFDIFDFLELKKNTGKEEQRARDLFYALWIPDLFMKRVETNGDWSLMCPNDCPGLD 360
Query: 361 DCWGAEFEKLYTHYEREGKAKKVVQAQNLWFEILTSQIETGTPYMLFKDTCNRKSNQQNL 420
+CWG EFEKLY YE+EG+AK+VV+AQ LW+ I+ SQ ETGTPYML+KD CNRKSN+QNL
Sbjct: 361 ECWGEEFEKLYAKYEQEGRAKRVVKAQQLWYAIIESQTETGTPYMLYKDACNRKSNRQNL 420
Query: 421 GTIKSSNLCTEIIEYTSPTETAVCNLASIALPRFVREKDVPVESHPSRIVGSRGSKNRFF 480
GTIK SNLCTEI+EYTS E AVCNLASIAL +V + R F
Sbjct: 421 GTIKCSNLCTEIVEYTSADEVAVCNLASIALNMYV-------------------TSERTF 461
Query: 481 DFEKLAEVTAIVTENLNKIIDVNYYPVETARRSNLRHRPIGIGVQGLADTFILLGMAFES 540
DF+KLA VT ++ +NLNKIID+NYYPV+ A SN RHRPIGIGVQGLAD FIL+ FES
Sbjct: 462 DFQKLASVTKVIVKNLNKIIDINYYPVKEAENSNKRHRPIGIGVQGLADAFILMRFPFES 521
Query: 541 PEAQQLNKDIFETIYYHALKTSSEIAAKEGPYETYHNSPVSKGILQPDMWNVIPSDRWDW 600
EAQ LN IFETIYY AL++S E+AA+ GPY+TY PVSKGILQ DMW P+D WDW
Sbjct: 522 TEAQLLNTQIFETIYYAALESSCELAAEYGPYQTYAGCPVSKGILQYDMWEKTPTDLWDW 581
Query: 601 GVLRDMISKNGVRNSLLVAPMPTASTSQILGNNECFEPYTSNIYSRRVLSGEFVVVNKHL 660
L++ I+ +GVRNSLL+APMPTAST+QILGNNE EPYTSNIY RRVLSGEF +VN HL
Sbjct: 582 AALKEKIANDGVRNSLLLAPMPTASTAQILGNNESIEPYTSNIYHRRVLSGEFQIVNPHL 641
Query: 661 LHDLTEMGIWSPTIKNKIIYDDGSVQKIPEIPEELKMIYKTVWEIKQMTLVDMAVDRGCY 720
L DLTE G+W+ +KN+II +GS+Q IP IP++LK +YKTVWEI Q T++ MA DRG Y
Sbjct: 642 LKDLTERGLWNEEMKNQIIAQNGSIQTIPAIPDDLKELYKTVWEISQKTILKMAADRGAY 701
Query: 721 IDQSQSLNIHMDQPNFKKVTSLHFRTWSRGLKTGMYYLRSRAAADAIKFTVDTSVFKEKP 780
IDQSQSLNIH+ +PN+ K+TS+HF W +GLKTGMYYLR++ A+ I+FT++ KE
Sbjct: 702 IDQSQSLNIHIAEPNYGKLTSMHFYGWKQGLKTGMYYLRTKPGANPIQFTLNKEKLKET- 760
Query: 781 EKPELVVDDETK---MAQVVCSLTNREECMACGS 811
+K D+ETK A +VCSL NR EC+ CGS
Sbjct: 761 QKTTSSEDEETKERNKAAMVCSLENRHECLMCGS 794
>sp|P48591|RIR1_DROME Ribonucleoside-diphosphate reductase large subunit OS=Drosophila
melanogaster GN=RnrL PE=1 SV=2
Length = 812
Score = 1105 bits (2857), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 517/822 (62%), Positives = 643/822 (78%), Gaps = 32/822 (3%)
Query: 1 MYVVKRDGRQEAVHFDKITARLKKLSYGLSTEHCDPVLVSQKVCAGVYKGVTTSQLDELA 60
+YV+KRDGRQE VHFDKIT+R++KL Y L+ + DPV ++ +V G+Y GVTT +LD LA
Sbjct: 12 LYVIKRDGRQEEVHFDKITSRIQKLCYNLNMDFVDPVTITLQVINGLYCGVTTQELDNLA 71
Query: 61 AETAAAMTTNHPDYASLAARIAVSNLHKNTKKSFSETIKDMYNHYNERSGLKAPLIADDI 120
AE AA +T NHPDYA LAARIAVSNLHK TKK+FS+ +D+YNH N+ + K PL+++
Sbjct: 72 AEIAAGLTCNHPDYAILAARIAVSNLHKETKKAFSDVFEDLYNHVNKETNQKVPLVSEFH 131
Query: 121 YEIIMKNAACLDSEIIYDRDFDYDYFGFKTLERSYLLKVQGKVVERPQHMLMRVSIGIHK 180
Y ++ KNA L+S IIYDRDF Y+YFGFKTLERSYLLK GK+ ERPQHMLMRV+IGIH
Sbjct: 132 YNVVKKNATRLNSSIIYDRDFGYNYFGFKTLERSYLLKRNGKIAERPQHMLMRVAIGIHG 191
Query: 181 DDIDSAIKTYHMMSQRWFTHASPTLFNAGTPRPQLSSCFLVCMKDDSIEGIYETLKECAV 240
+DID+A++TY+++S+R+FTHASPTLF A T RPQLSSCFL+ M DSIEGI++++++CA+
Sbjct: 192 EDIDAAVETYNLLSERYFTHASPTLFAAATNRPQLSSCFLLTMTADSIEGIFKSVEQCAM 251
Query: 241 ISKSAGGIGVSVHNIRATGSYIRGTNGTSNGIVPMLRVFNDTARYVDQGGGKRKGAFAVY 300
ISKSAGGIG++VH IRA G+ I GTNGTSNG+VPMLRVFN+ ARYVDQGGGKR GAFA+Y
Sbjct: 252 ISKSAGGIGLNVHCIRAKGTSICGTNGTSNGLVPMLRVFNNVARYVDQGGGKRPGAFAIY 311
Query: 301 LEPWHADIFEFLNLKKNHGKEEHRARDLFYALWVPDLFMERVQTNGQWSLFCPNEASGLA 360
LEPWH+D+FEFL LKKN GKEE+RARDLFYALW+PDLFM+RV+ NG WSL CP++ GL
Sbjct: 312 LEPWHSDVFEFLELKKNTGKEENRARDLFYALWIPDLFMKRVEANGDWSLMCPHKCPGLH 371
Query: 361 DCWGAEFEKLYTHYEREGKAKKVVQAQNLWFEILTSQIETGTPYMLFKDTCNRKSNQQNL 420
D WG EFEKLY YE+EG+A + V+AQ+LWF I+ +Q+ETG PYMLFKD CNRKSNQQN+
Sbjct: 372 DVWGDEFEKLYEKYEQEGRANRTVKAQSLWFAIIEAQVETGNPYMLFKDACNRKSNQQNV 431
Query: 421 GTIKSSNLCTEIIEYTSPTETAVCNLASIALPRFVREKDVPVESHPSRIVGSRGSKNRFF 480
GTIK SNLCTEI+EY++P E AVCNLASIAL FV + + +
Sbjct: 432 GTIKCSNLCTEIVEYSAPDEIAVCNLASIALNMFV-------------------TPEKTY 472
Query: 481 DFEKLAEVTAIVTENLNKIIDVNYYPVETARRSNLRHRPIGIGVQGLADTFILLGMAFES 540
DF+KL EVT IVT+NLNKIID+NYYP+ AR+SNLRHRP+GIG+QG AD IL+ +ES
Sbjct: 473 DFKKLKEVTKIVTKNLNKIIDINYYPLPEARKSNLRHRPVGIGIQGFADALILMRFPYES 532
Query: 541 PEAQQLNKDIFETIYYHALKTSSEIAAKEGPYETYHNSPVSKGILQPDMWNVIPSDRWDW 600
EA LN+ IFETIYY AL+ S E+A EGPYETY SPVSKGILQ DMW+ +P++ WDW
Sbjct: 533 EEAGLLNQQIFETIYYGALEASCELAQTEGPYETYEGSPVSKGILQYDMWDKVPTNLWDW 592
Query: 601 GVLRDMISKNGVRNSLLVAPMPTASTSQILGNNECFEPYTSNIYSRRVLSGEFVVVNKHL 660
L++ I +GVRNSLLVAPMPTAST+QI+GNNE FEPYT+NIY+RRVLSGEF VVN HL
Sbjct: 593 QKLKESIRMHGVRNSLLVAPMPTASTAQIMGNNESFEPYTTNIYTRRVLSGEFQVVNHHL 652
Query: 661 LHDLTEMGIWSPTIKNKIIYDDGSVQKIPEIPEELKMIYKTVWEIKQMTLVDMAVDRGCY 720
L DLTE+ +W +KN+II GS+Q I IP +++ +YKTVWEI + + MA DRG +
Sbjct: 653 LRDLTELDLWDDDMKNQIISSRGSIQNIETIPPKVRDLYKTVWEISVKSTIKMAADRGAF 712
Query: 721 IDQSQSLNIHMDQPNFKKVTSLHFRTWSRGLKTGMYYLRSRAAADAIKFTVD-------- 772
IDQSQS NIH+ +PN+ K+TS+HF +W GLKTGMYYLR++ AA+AI+FTV+
Sbjct: 713 IDQSQSFNIHVAEPNYGKLTSIHFYSWKAGLKTGMYYLRTKPAANAIQFTVNKKQGAVSM 772
Query: 773 ---TSVFKEKPEKPELVVDDETKMAQVVCSLTNREECMACGS 811
+ P+K E D E KMA +VCSL N++ CM+CGS
Sbjct: 773 NGQNGTAEGSPQKYE--EDRERKMADMVCSLENKDACMSCGS 812
>sp|Q9UW15|RIR1_NEUCR Ribonucleoside-diphosphate reductase large chain OS=Neurospora
crassa (strain ATCC 24698 / 74-OR23-1A / CBS 708.71 /
DSM 1257 / FGSC 987) GN=rnr-1 PE=1 SV=2
Length = 929
Score = 1104 bits (2856), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 514/777 (66%), Positives = 617/777 (79%), Gaps = 18/777 (2%)
Query: 1 MYVVKRDGRQEAVHFDKITARLKKLSYGLSTEHCDPVLVSQKVCAGVYKGVTTSQLDELA 60
MYV KRDGRQE V FDKITAR+ +L YGL H DPV ++QKV +GVY GVTT+QLD+LA
Sbjct: 1 MYVKKRDGRQERVQFDKITARVSRLCYGLDMNHVDPVAITQKVISGVYGGVTTAQLDDLA 60
Query: 61 AETAAAMTTNHPDYASLAARIAVSNLHKNTKKSFSETIKDMYNHYNERSGLKAPLIADDI 120
AETAA MT HPDYA LAARIAVSNLHK TKK +S I ++YN+ N R+G +P+IA D+
Sbjct: 61 AETAAYMTVTHPDYAILAARIAVSNLHKQTKKQWSLVISELYNYVNPRTGKHSPMIAKDV 120
Query: 121 YEIIMKNAACLDSEIIYDRDFDYDYFGFKTLERSYLLKVQGKVVERPQHMLMRVSIGIHK 180
YE +M++ DS I+YDRDF+Y YFGFKTLERSYLLK+ G++ ERPQHM+MRV++GI
Sbjct: 121 YECVMRHKDEFDSAIVYDRDFNYQYFGFKTLERSYLLKLDGQIAERPQHMIMRVAVGIWG 180
Query: 181 DDIDSAIKTYHMMSQRWFTHASPTLFNAGTPRPQLSSCFLVCMKDDSIEGIYETLKECAV 240
DD++ I+TY++MS + FTHASPTLFNAGTP+PQLSSCFLV MK+DSIEGIY+TLK CA+
Sbjct: 181 DDVERVIETYNLMSLKTFTHASPTLFNAGTPQPQLSSCFLVDMKEDSIEGIYDTLKTCAM 240
Query: 241 ISKSAGGIGVSVHNIRATGSYIRGTNGTSNGIVPMLRVFNDTARYVDQGGGKRKGAFAVY 300
ISK AGGIG+++H IRATGSYI GTNGTSNGIVPMLRVFN+TARYVDQGG KR GAFA+Y
Sbjct: 241 ISKMAGGIGLNIHRIRATGSYIAGTNGTSNGIVPMLRVFNNTARYVDQGGNKRPGAFAIY 300
Query: 301 LEPWHADIFEFLNLKKNHGKEEHRARDLFYALWVPDLFMERVQTNGQWSLFCPNEASGLA 360
LEPWHAD+FEFL+L+KNHGKEE RARDLF ALW+PDLFM+RV+ NGQW+L CP+E GLA
Sbjct: 301 LEPWHADVFEFLDLRKNHGKEEVRARDLFLALWIPDLFMKRVEQNGQWTLMCPHECPGLA 360
Query: 361 DCWGAEFEKLYTHYEREGKAKKVVQAQNLWFEILTSQIETGTPYMLFKDTCNRKSNQQNL 420
D +G EFE LY YE+EGK +K V+AQ LW+ IL +Q ETG P+ML+KD CNRKSNQ+NL
Sbjct: 361 DVYGDEFEALYEKYEKEGKGRKTVKAQKLWYAILEAQTETGNPFMLYKDACNRKSNQKNL 420
Query: 421 GTIKSSNLCTEIIEYTSPTETAVCNLASIALPRFVREKDVPVESHPSRIVGSRGSKNRFF 480
GTI+SSNLCTEIIEY++P E AVCNLAS+AL F+ +N +
Sbjct: 421 GTIRSSNLCTEIIEYSAPDEVAVCNLASLALSAFI------------------DYENASY 462
Query: 481 DFEKLAEVTAIVTENLNKIIDVNYYPVETARRSNLRHRPIGIGVQGLADTFILLGMAFES 540
DF+KL EVT +V NLNKIID+N+YPV+ A SN+RHRPIG+GVQGLAD F+ L M F+S
Sbjct: 463 DFKKLHEVTQVVVRNLNKIIDINHYPVKEAHNSNMRHRPIGVGVQGLADAFLALRMPFDS 522
Query: 541 PEAQQLNKDIFETIYYHALKTSSEIAAKEGPYETYHNSPVSKGILQPDMWNVIPSDRWDW 600
A +LN IFETIY+ AL S ++A ++GPY TY SPVS+GILQ DMWNV P++ WDW
Sbjct: 523 DAASKLNIQIFETIYHAALTASCQLAKEQGPYATYEGSPVSQGILQYDMWNVTPTNLWDW 582
Query: 601 GVLRDMISKNGVRNSLLVAPMPTASTSQILGNNECFEPYTSNIYSRRVLSGEFVVVNKHL 660
L+ I K GVRNSLL+APMPTASTSQILGNNECFEPYTSNIY RRVL+GEF VVN L
Sbjct: 583 TALKADIKKYGVRNSLLLAPMPTASTSQILGNNECFEPYTSNIYQRRVLAGEFQVVNPWL 642
Query: 661 LHDLTEMGIWSPTIKNKIIYDDGSVQKIPEIPEELKMIYKTVWEIKQMTLVDMAVDRGCY 720
L DL EMG+WS +KN+II + GS+Q I IP ++K +YKTVWEI Q T+V MA DRG +
Sbjct: 643 LRDLVEMGLWSDAMKNRIIAEGGSIQNIQSIPNDIKALYKTVWEISQRTIVKMAADRGAF 702
Query: 721 IDQSQSLNIHMDQPNFKKVTSLHFRTWSRGLKTGMYYLRSRAAADAIKFTVDTSVFK 777
IDQSQSLNIHM +P K+TS+HF W GLKTGMYYLR++AAA I+FTVD +
Sbjct: 703 IDQSQSLNIHMREPTMGKITSMHFAGWKMGLKTGMYYLRTQAAAQPIQFTVDQEALR 759
>sp|P36602|RIR1_SCHPO Ribonucleoside-diphosphate reductase large chain
OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843)
GN=cdc22 PE=1 SV=2
Length = 811
Score = 1089 bits (2816), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 517/834 (61%), Positives = 644/834 (77%), Gaps = 46/834 (5%)
Query: 1 MYVVKRDGRQEAVHFDKITARLKKLSYGLSTEHCDPVLVSQKVCAGVYKGVTTSQLDELA 60
M+V KRDGRQE V FDKITAR+ +L YGL ++H DPV ++QKV +GVY GVTT +LD LA
Sbjct: 1 MFVYKRDGRQEKVAFDKITARVSRLCYGLDSDHVDPVEITQKVISGVYPGVTTIELDNLA 60
Query: 61 AETAAAMTTNHPDYASLAARIAVSNLHKNTKKSFSETIKDMYNHYNERSGLKAPLIADDI 120
AETAA MTT HPDYA LAARIAVSNLHK T+K FS ++ ++++ N ++ AP+I+D I
Sbjct: 61 AETAATMTTKHPDYAILAARIAVSNLHKQTEKVFSTVVQQLHDYVNPKTDKPAPMISDKI 120
Query: 121 YEIIMKNAACLDSEIIYDRDFDYDYFGFKTLERSYLLKVQGKVVERPQHMLMRVSIGIHK 180
Y+I+MK+ LDS IIYDRDF Y++FGFKTLERSYLL++ GKV ERPQHM+MRV++GIH
Sbjct: 121 YDIVMKHKDELDSAIIYDRDFTYNFFGFKTLERSYLLRIDGKVAERPQHMIMRVAVGIHG 180
Query: 181 DDIDSAIKTYHMMSQRWFTHASPTLFNAGTPRPQLSSCFLVCMKDDSIEGIYETLKECAV 240
+DI++AI+TY++MSQR+FTHASPTLFNAGTPRPQLSSCFLV MKDDSIEGIY+TLK CA+
Sbjct: 181 EDIEAAIETYNLMSQRYFTHASPTLFNAGTPRPQLSSCFLVTMKDDSIEGIYDTLKMCAM 240
Query: 241 ISKSAGGIGVSVHNIRATGSYIRGTNGTSNGIVPMLRVFNDTARYVDQGGGKRKGAFAVY 300
ISK+AGGIG+++HNIRATGSYI GTNGTSNGIVPM+RV+N+TARYVDQGG KR GAFA Y
Sbjct: 241 ISKTAGGIGINIHNIRATGSYIAGTNGTSNGIVPMIRVYNNTARYVDQGGNKRPGAFAAY 300
Query: 301 LEPWHADIFEFLNLKKNHGKEEHRARDLFYALWVPDLFMERVQTNGQWSLFCPNEASGLA 360
LEPWHAD+ +FL L+K HG E+ RAR++FYALW+PDLFM+RV+ N QW+ FCPNEA GLA
Sbjct: 301 LEPWHADVMDFLELRKTHGNEDFRAREMFYALWIPDLFMQRVERNEQWTFFCPNEAPGLA 360
Query: 361 DCWGAEFEKLYTHYEREGKAKKVVQAQNLWFEILTSQIETGTPYMLFKDTCNRKSNQQNL 420
D WG EF LY YE+E + ++ + AQ +W+ IL SQ+ETG P+ML+KD+CNRKSNQ+N+
Sbjct: 361 DVWGDEFVALYEKYEKENRGRRSLPAQKVWYAILQSQVETGNPFMLYKDSCNRKSNQKNV 420
Query: 421 GTIKSSNLCTEIIEYTSPTETAVCNLASIALPRFVREKDVPVESHPSRIVGSRGSKNRFF 480
GTI+ SNLCTEI+EY+SP E AVCNLAS+ALP F+++ +
Sbjct: 421 GTIRCSNLCTEIVEYSSPDEVAVCNLASVALPTFIKDGK--------------------Y 460
Query: 481 DFEKLAEVTAIVTENLNKIIDVNYYPVETARRSNLRHRPIGIGVQGLADTFILLGMAFES 540
+F+KL +V +VT NLNKIIDVNYYPV ARRSN+RHRP+G+GVQGLAD F L + FES
Sbjct: 461 NFQKLHDVVKVVTRNLNKIIDVNYYPVPEARRSNMRHRPVGLGVQGLADAFFALRLPFES 520
Query: 541 PEAQQLNKDIFETIYYHALKTSSEIAAKEGPYETYHNSPVSKGILQPDMWNVIPSDRWDW 600
A++LN IFETIY+ AL+ S EIA EG YE+Y SP S+GILQ DMWNV P+D WDW
Sbjct: 521 AGAKKLNIQIFETIYHAALEASCEIAQVEGTYESYEGSPASQGILQYDMWNVNPTDLWDW 580
Query: 601 GVLRDMISKNGVRNSLLVAPMPTASTSQILGNNECFEPYTSNIYSRRVLSGEFVVVNKHL 660
L++ I+K+G+RNSLLVAPMPTASTSQILG NECFEPYTSN+Y RRVLSGEF +VN L
Sbjct: 581 AELKEKIAKHGIRNSLLVAPMPTASTSQILGFNECFEPYTSNMYQRRVLSGEFQIVNPWL 640
Query: 661 LHDLTEMGIWSPTIKNKIIYDDGSVQKIPEIPEELKMIYKTVWEIKQMTLVDMAVDRGCY 720
L DL E +W+ +KNK++ DGS+Q IPEIP++LK +YKTVWEI Q T++D A DRG +
Sbjct: 641 LKDLVERDLWNEDMKNKLVMLDGSIQAIPEIPQDLKDLYKTVWEISQKTVIDYAADRGPF 700
Query: 721 IDQSQSLNIHMDQPNFKKVTSLHFRTWSRGLKTGMYYLRSRAAADAIKFTVDTSVFKEK- 779
IDQSQSLNIH+ P++ K+TS+HF W +GLKTGMYYLR+ AA+ AIKFTVD + +
Sbjct: 701 IDQSQSLNIHLKDPSYGKITSMHFYGWKKGLKTGMYYLRTMAASAAIKFTVDPVALRARN 760
Query: 780 ----------------------PEKPELVVDDETKMAQVVCSLTNREECMACGS 811
P K E+ + +E +A CS+ N E C C +
Sbjct: 761 EESNEENKKPVIKNGKAEISAEPTKEEIDIYNEKVLA---CSIKNPEACEMCSA 811
>sp|Q54Q71|RIR1_DICDI Ribonucleoside-diphosphate reductase large subunit OS=Dictyostelium
discoideum GN=rnrA PE=3 SV=1
Length = 870
Score = 1085 bits (2807), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 513/780 (65%), Positives = 624/780 (80%), Gaps = 16/780 (2%)
Query: 1 MYVVKRDGRQEAVHFDKITARLK---KLSYGLSTEHCDPVLVSQKVCAGVYKGVTTSQLD 57
MYVVKRDG +E V FDKIT+R+ ++ L+++ DP+ V+QKV +GV+ GV T++LD
Sbjct: 16 MYVVKRDGTKENVSFDKITSRISFLCEMEPKLNSDIVDPIEVAQKVVSGVFPGVKTTELD 75
Query: 58 ELAAETAAAMTTNHPDYASLAARIAVSNLHKNTKKSFSETIKDMYNHYNERSGLKAPLIA 117
LAAETAA M+T HPDY LAARI+VSNLHK T KSF ET+K Y N +S L APL++
Sbjct: 76 NLAAETAAYMSTRHPDYGILAARISVSNLHKQTSKSFVETVKKQYEFINPKSNLLAPLVS 135
Query: 118 DDIYEIIMKNAACLDSEIIYDRDFDYDYFGFKTLERSYLLKVQGKVVERPQHMLMRVSIG 177
++YEI+MK+ L+S I Y RDFDYD+FGFKTLERSYL ++ GK+VERPQHMLMRVSIG
Sbjct: 136 KELYEIVMKHGERLESVIDYYRDFDYDFFGFKTLERSYLHRINGKIVERPQHMLMRVSIG 195
Query: 178 IHKDDIDSAIKTYHMMSQRWFTHASPTLFNAGTPRPQLSSCFLVCMKDDSIEGIYETLKE 237
IH +D++SAI TY +S++ FTHA+PTLFNAGTP PQ+SSCFLV MK+DSI+GIY+TLK+
Sbjct: 196 IHGEDLESAINTYKRLSEKLFTHATPTLFNAGTPSPQMSSCFLVQMKEDSIDGIYDTLKQ 255
Query: 238 CAVISKSAGGIGVSVHNIRATGSYIRGTNGTSNGIVPMLRVFNDTARYVDQGGGKRKGAF 297
CA+ISKSAGGIG++VH IRA SYIRGTNGTSNG+VPMLRVFNDTARYVDQGGGKRKGAF
Sbjct: 256 CALISKSAGGIGIAVHKIRAAQSYIRGTNGTSNGLVPMLRVFNDTARYVDQGGGKRKGAF 315
Query: 298 AVYLEPWHADIFEFLNLKKNHGKEEHRARDLFYALWVPDLFMERVQTNGQWSLFCPNEAS 357
AVYLEPWHAD+FEF++LKKN GKEE RARDLFYALWV D+FMERV+ NG W+LFCPNEA
Sbjct: 316 AVYLEPWHADVFEFIDLKKNTGKEEMRARDLFYALWVSDIFMERVEQNGDWALFCPNEAP 375
Query: 358 GLADCWGAEFEKLYTHYEREGK-AKKVVQAQNLWFEILTSQIETGTPYMLFKDTCNRKSN 416
GLA+ E LY YE ++V++AQ LWF I+ SQ+ETGTP++L+KD CN KSN
Sbjct: 376 GLAETHSEEHRALYLKYEATPDLPRRVIKAQELWFAIMESQVETGTPFILYKDACNAKSN 435
Query: 417 QQNLGTIKSSNLCTEIIEYTSPTETAVCNLASIALPRFVREKDVPVESHPSRIVGSRGSK 476
Q+NLGTI SSNLCTEII+YTSP E AVCNLASIALP+FVR+K VGS K
Sbjct: 436 QKNLGTISSSNLCTEIIQYTSPDEIAVCNLASIALPKFVRQK-----------VGSTDPK 484
Query: 477 NRFFDFEKLAEVTAIVTENLNKIIDVNYYPVETARRSNLRHRPIGIGVQGLADTFILLGM 536
+ FD + L E+T ++T NLN IID NYYPV A+ SNLRHRPIGIG+QGLAD FI + M
Sbjct: 485 EKEFDHQFLFEITKLITVNLNVIIDRNYYPVAEAKTSNLRHRPIGIGIQGLADVFIKMRM 544
Query: 537 AFESPEAQQLNKDIFETIYYHALKTSSEIAAKEGPYETYHNSPVSKGILQPDMWNVIPSD 596
F+S A +LN +I ETIY+ AL S E+A ++G YE++ SP SKGILQ DMWNV PS
Sbjct: 545 PFDSVAAAKLNVEIAETIYFAALTASHELAIRDGTYESFKGSPASKGILQFDMWNVTPSS 604
Query: 597 RWDWGVLRD-MISKNGVRNSLLVAPMPTASTSQILGNNECFEPYTSNIYSRRVLSGEFVV 655
RW+W L+D +++K G+RNSLL+APMPTASTSQILGNNECFEPYTSNIYSRRVL+GEF +
Sbjct: 605 RWNWAELKDNIVNKGGLRNSLLIAPMPTASTSQILGNNECFEPYTSNIYSRRVLAGEFTI 664
Query: 656 VNKHLLHDLTEMGIWSPTIKNKIIYDDGSVQKIPEIPEELKMIYKTVWEIKQMTLVDMAV 715
VNK LL DL E+GIWSP +KN+I+ GS+Q I IP++LK +YKTVWEI+Q TL+DMA
Sbjct: 665 VNKQLLEDLMELGIWSPEMKNQIVAARGSIQSIGGIPDDLKELYKTVWEIRQRTLIDMAA 724
Query: 716 DRGCYIDQSQSLNIHMDQPNFKKVTSLHFRTWSRGLKTGMYYLRSRAAADAIKFTVDTSV 775
DRG +IDQSQS N+ + +P F K+TS+HF +W +GLKTGMYYLR+R AADAI+FTVD V
Sbjct: 725 DRGAFIDQSQSFNVFIAEPTFAKLTSMHFYSWKKGLKTGMYYLRTRPAADAIQFTVDPIV 784
>sp|Q03604|RIR1_CAEEL Ribonucleoside-diphosphate reductase large subunit
OS=Caenorhabditis elegans GN=rnr-1 PE=3 SV=1
Length = 788
Score = 1078 bits (2787), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 508/800 (63%), Positives = 630/800 (78%), Gaps = 22/800 (2%)
Query: 2 YVVKRDGRQEAVHFDKITARLKKLSYGLSTEHCDPVLVSQKVCAGVYKGVTTSQLDELAA 61
YVVKRDGR+E VHFDKIT+R++KLSYGL+ + DPV V+ KV +G+YKGVTT +LD LAA
Sbjct: 8 YVVKRDGRKEDVHFDKITSRIQKLSYGLNMDFVDPVAVAIKVISGLYKGVTTVELDNLAA 67
Query: 62 ETAAAMTTNHPDYASLAARIAVSNLHKNTKKSFSETIKDMYNHYNERSGLKAPLIADDIY 121
ETAA+MTT HP+YA LAARIAVSNLHK T K FSE +K ++ ++ +G AP+I+D+ +
Sbjct: 68 ETAASMTTQHPEYALLAARIAVSNLHKKTNKVFSEVMKTLHEFHHPHTGKHAPMISDETW 127
Query: 122 EIIMKNAACLDSEIIYDRDFDYDYFGFKTLERSYLLKVQGKVVERPQHMLMRVSIGIHKD 181
II KNA L+S I+YDRD+ Y YFGFKTLERSYLLK+ ++VERPQ MLMRVSIGIH D
Sbjct: 128 AIIEKNADKLNSAIVYDRDYSYTYFGFKTLERSYLLKINKEIVERPQQMLMRVSIGIHGD 187
Query: 182 DIDSAIKTYHMMSQRWFTHASPTLFNAGTPRPQLSSCFLVCMKDDSIEGIYETLKECAVI 241
DI SAI+TY++MS+R+ THASPTLFN+GT RPQ+SSCFL+ M +DSI GIY+TLK+CA+I
Sbjct: 188 DITSAIETYNLMSERYMTHASPTLFNSGTCRPQMSSCFLLTMSEDSILGIYDTLKQCALI 247
Query: 242 SKSAGGIGVSVHNIRATGSYIRGTNGTSNGIVPMLRVFNDTARYVDQGGGKRKGAFAVYL 301
SKSAGGIG++VH IRATGS I GTNGTSNG++PMLRV+N+TARYVDQGG KR GAFA+YL
Sbjct: 248 SKSAGGIGLNVHKIRATGSVIAGTNGTSNGLIPMLRVYNNTARYVDQGGNKRPGAFAIYL 307
Query: 302 EPWHADIFEFLNLKKNHGKEEHRARDLFYALWVPDLFMERVQTNGQWSLFCPNEASGLAD 361
EPWHADIFEF++L+KN G EE RARDLF ALW+PDLFM+RV+ + +WSL CP E GL D
Sbjct: 308 EPWHADIFEFVSLRKNTGPEEERARDLFLALWIPDLFMKRVEKDQEWSLMCPCECPGLDD 367
Query: 362 CWGAEFEKLYTHYEREGKAKKVVQAQNLWFEILTSQIETGTPYMLFKDTCNRKSNQQNLG 421
CWG EFE LY YE EG+ +K V+A+ LW I+++QIETG PY+ +KD NRKSNQQNLG
Sbjct: 368 CWGEEFEALYAKYEAEGRVRKTVKARKLWEHIVSNQIETGLPYITYKDAANRKSNQQNLG 427
Query: 422 TIKSSNLCTEIIEYTSPTETAVCNLASIALPRFVREKDVPVESHPSRIVGSRGSKNRFFD 481
TIK SNLCTEIIEY++P E AVCNLASIAL R+V + + FD
Sbjct: 428 TIKCSNLCTEIIEYSAPDEIAVCNLASIALNRYV-------------------TPEKKFD 468
Query: 482 FEKLAEVTAIVTENLNKIIDVNYYPVETARRSNLRHRPIGIGVQGLADTFILLGMAFESP 541
F KLAEVT ++T NLNKIIDVNYYPVE AR SN+RHRPIG+GVQGLAD F+L+ F S
Sbjct: 469 FVKLAEVTKVITRNLNKIIDVNYYPVEEARNSNMRHRPIGLGVQGLADCFMLMRYPFTSA 528
Query: 542 EAQQLNKDIFETIYYHALKTSSEIAAKEGPYETYHNSPVSKGILQPDMWNVIPSDRWDWG 601
EA+ LNK IFETIYY AL+ S E+A GPY TY SPVSKG LQ DMW V P+D+ DW
Sbjct: 529 EARDLNKRIFETIYYAALEASCELAELNGPYSTYEGSPVSKGQLQFDMWGVTPTDQCDWA 588
Query: 602 VLRDMISKNGVRNSLLVAPMPTASTSQILGNNECFEPYTSNIYSRRVLSGEFVVVNKHLL 661
LR I+K+G+RNSLL+APMPTAST+QILGNNE EPYTSNIYSRRVLSG+F +VN H+L
Sbjct: 589 TLRKKIAKHGIRNSLLMAPMPTASTAQILGNNESIEPYTSNIYSRRVLSGDFQIVNPHML 648
Query: 662 HDLTEMGIWSPTIKNKIIYDDGSVQKIPEIPEELKMIYKTVWEIKQMTLVDMAVDRGCYI 721
DL E G+W+ +KN++I ++GS+Q I IP ++K +Y+TVWEI Q +++MA DRG YI
Sbjct: 649 KDLVERGLWTDEMKNRLIANNGSIQNIDGIPSDIKELYRTVWEISQKDIIEMAADRGAYI 708
Query: 722 DQSQSLNIHMDQPNFKKVTSLHFRTWSRGLKTGMYYLRSRAAADAIKFTVDTSVFK--EK 779
DQSQSLNIHM +P++ +TS+HF W +GLKTGMYYLR++ A +A++FTVD + K ++
Sbjct: 709 DQSQSLNIHMAKPSYAGITSMHFYGWKKGLKTGMYYLRTKPAVNAVQFTVDKNALKTNQQ 768
Query: 780 PEKPELVVDDETKMAQVVCS 799
E P V + + + ++CS
Sbjct: 769 AETPATVAESQDE-GCLMCS 787
>sp|P21524|RIR1_YEAST Ribonucleoside-diphosphate reductase large chain 1 OS=Saccharomyces
cerevisiae (strain ATCC 204508 / S288c) GN=RNR1 PE=1
SV=2
Length = 888
Score = 1077 bits (2785), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 490/781 (62%), Positives = 623/781 (79%), Gaps = 15/781 (1%)
Query: 1 MYVVKRDGRQEAVHFDKITARLKKLSYGLSTEHCDPVLVSQKVCAGVYKGVTTSQLDELA 60
MYV KRDGR+E V FDKITAR+ +L YGL +H D V V+Q++ +GVY+GVTT +LD LA
Sbjct: 1 MYVYKRDGRKEPVQFDKITARISRLCYGLDPKHIDAVKVTQRIISGVYEGVTTIELDNLA 60
Query: 61 AETAAAMTTNHPDYASLAARIAVSNLHKNTKKSFSETIKDMYNHYNERSGLKAPLIADDI 120
AET A MTT HPDYA+LAARIA+SNLHK T K FS+ ++D+Y + N +G AP+I+DD+
Sbjct: 61 AETCAYMTTVHPDYATLAARIAISNLHKQTTKQFSKVVEDLYRYVNAATGKPAPMISDDV 120
Query: 121 YEIIMKNAACLDSEIIYDRDFDYDYFGFKTLERSYLLKVQGKVVERPQHMLMRVSIGIHK 180
Y I+M+N L+S I+YDRDF Y YFGFKTLERSYLL++ G+V ERPQH++MRV++GIH
Sbjct: 121 YNIVMENKDKLNSAIVYDRDFQYSYFGFKTLERSYLLRINGQVAERPQHLIMRVALGIHG 180
Query: 181 DDIDSAIKTYHMMSQRWFTHASPTLFNAGTPRPQLSSCFLVCMKDDSIEGIYETLKECAV 240
DI++A++TY++MS ++FTHASPTLFNAGTP+PQ+SSCFLV MK+DSIEGIY+TLKECA+
Sbjct: 181 RDIEAALETYNLMSLKYFTHASPTLFNAGTPKPQMSSCFLVAMKEDSIEGIYDTLKECAL 240
Query: 241 ISKSAGGIGVSVHNIRATGSYIRGTNGTSNGIVPMLRVFNDTARYVDQGGGKRKGAFAVY 300
ISK+AGGIG+ +HNIR+TGSYI GTNGTSNG++PM+RVFN+TARYVDQGG KR GAFA+Y
Sbjct: 241 ISKTAGGIGLHIHNIRSTGSYIAGTNGTSNGLIPMIRVFNNTARYVDQGGNKRPGAFALY 300
Query: 301 LEPWHADIFEFLNLKKNHGKEEHRARDLFYALWVPDLFMERVQTNGQWSLFCPNEASGLA 360
LEPWHADIF+F++++KNHGKEE RARDLF ALW+PDLFM+RV+ NG W+LF P A GL+
Sbjct: 301 LEPWHADIFDFIDIRKNHGKEEIRARDLFPALWIPDLFMKRVEENGTWTLFSPTSAPGLS 360
Query: 361 DCWGAEFEKLYTHYEREGKAKKVVQAQNLWFEILTSQIETGTPYMLFKDTCNRKSNQQNL 420
DC+G EFE LYT YE+EG+ K ++AQ LW+ IL +Q ETGTP++++KD CNRKSNQ+NL
Sbjct: 361 DCYGDEFEALYTRYEKEGRG-KTIKAQKLWYSILEAQTETGTPFVVYKDACNRKSNQKNL 419
Query: 421 GTIKSSNLCTEIIEYTSPTETAVCNLASIALPRFVREKDVPVESHPSRIVGSRGSKNRFF 480
G IKSSNLC EI+EY++P ETAVCNLAS+ALP F+ S K +
Sbjct: 420 GVIKSSNLCCEIVEYSAPDETAVCNLASVALPAFIET--------------SEDGKTSTY 465
Query: 481 DFEKLAEVTAIVTENLNKIIDVNYYPVETARRSNLRHRPIGIGVQGLADTFILLGMAFES 540
+F+KL E+ +VT NLN++ID NYYPVE AR+SN+RHRPI +GVQGLADTF+LL + F+S
Sbjct: 466 NFKKLHEIAKVVTRNLNRVIDRNYYPVEEARKSNMRHRPIALGVQGLADTFMLLRLPFDS 525
Query: 541 PEAQQLNKDIFETIYYHALKTSSEIAAKEGPYETYHNSPVSKGILQPDMWNVIPSDRWDW 600
EA+ LN IFETIY+ +++ S E+A K+GPYET+ SP S+GILQ DMW+ P WDW
Sbjct: 526 EEARLLNIQIFETIYHASMEASCELAQKDGPYETFQGSPASQGILQFDMWDQKPYGMWDW 585
Query: 601 GVLRDMISKNGVRNSLLVAPMPTASTSQILGNNECFEPYTSNIYSRRVLSGEFVVVNKHL 660
LR I K+GVRNSL +APMPTASTSQILG NECFEP TSN+YSRRVLSGEF VVN +L
Sbjct: 586 DTLRKDIMKHGVRNSLTMAPMPTASTSQILGYNECFEPVTSNMYSRRVLSGEFQVVNPYL 645
Query: 661 LHDLTEMGIWSPTIKNKIIYDDGSVQKIPEIPEELKMIYKTVWEIKQMTLVDMAVDRGCY 720
L DL ++GIW +K +I +GS+Q +P +P+ELK +YKTVWEI Q T+++MA DR Y
Sbjct: 646 LRDLVDLGIWDEGMKQYLITQNGSIQGLPNVPQELKDLYKTVWEISQKTIINMAADRSVY 705
Query: 721 IDQSQSLNIHMDQPNFKKVTSLHFRTWSRGLKTGMYYLRSRAAADAIKFTVDTSVFKEKP 780
IDQS SLN+ + P K+TS+HF W +GLKTGMYYLR++AA+ AI+FT+D + +
Sbjct: 706 IDQSHSLNLFLRAPTMGKLTSMHFYGWKKGLKTGMYYLRTQAASAAIQFTIDQKIADQAT 765
Query: 781 E 781
E
Sbjct: 766 E 766
>sp|P21672|RIR3_YEAST Ribonucleoside-diphosphate reductase large chain 2 OS=Saccharomyces
cerevisiae (strain ATCC 204508 / S288c) GN=RNR3 PE=1
SV=4
Length = 869
Score = 1073 bits (2775), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 492/775 (63%), Positives = 616/775 (79%), Gaps = 15/775 (1%)
Query: 1 MYVVKRDGRQEAVHFDKITARLKKLSYGLSTEHCDPVLVSQKVCAGVYKGVTTSQLDELA 60
MYV+KRDGR+E V FDKIT+R+ +LSYGL D V V+Q++ +GVY GVTT +LD LA
Sbjct: 1 MYVIKRDGRKEPVQFDKITSRITRLSYGLDPNRIDAVKVTQRIISGVYSGVTTVELDNLA 60
Query: 61 AETAAAMTTNHPDYASLAARIAVSNLHKNTKKSFSETIKDMYNHYNERSGLKAPLIADDI 120
AET A MTT HPDYA+LAARIA+SNLHK T K FS+ I+D+++ N +G AP+I+D+I
Sbjct: 61 AETCAYMTTVHPDYATLAARIAISNLHKQTTKQFSKVIEDLHDWINPATGKHAPMISDEI 120
Query: 121 YEIIMKNAACLDSEIIYDRDFDYDYFGFKTLERSYLLKVQGKVVERPQHMLMRVSIGIHK 180
Y I+M+N L+S I+YDRDF Y YFGFKTLERSYLL++ G+V ERPQH++MRV++GIH
Sbjct: 121 YNIVMENKDTLNSAIVYDRDFQYTYFGFKTLERSYLLRLNGEVAERPQHLVMRVALGIHG 180
Query: 181 DDIDSAIKTYHMMSQRWFTHASPTLFNAGTPRPQLSSCFLVCMKDDSIEGIYETLKECAV 240
DI+S +KTY++MS R+FTHASPTLFNAGTP PQ+SSCFL+ MKDDSIEGIY+TLKECA+
Sbjct: 181 SDIESVLKTYNLMSLRYFTHASPTLFNAGTPHPQMSSCFLIAMKDDSIEGIYDTLKECAM 240
Query: 241 ISKSAGGIGVSVHNIRATGSYIRGTNGTSNGIVPMLRVFNDTARYVDQGGGKRKGAFAVY 300
ISK+AGG+G+ ++NIR+TGSYI GTNGTSNG++PM+RVFN+TARYVDQGG KR GAFA++
Sbjct: 241 ISKTAGGVGLHINNIRSTGSYIAGTNGTSNGLIPMIRVFNNTARYVDQGGNKRPGAFALF 300
Query: 301 LEPWHADIFEFLNLKKNHGKEEHRARDLFYALWVPDLFMERVQTNGQWSLFCPNEASGLA 360
LEPWHADIF+F++++K HGKEE RARDLF ALW+PDLFM+RVQ +G W+LF P+ A GL
Sbjct: 301 LEPWHADIFDFVDIRKTHGKEEIRARDLFPALWIPDLFMKRVQEDGPWTLFSPSAAPGLD 360
Query: 361 DCWGAEFEKLYTHYEREGKAKKVVQAQNLWFEILTSQIETGTPYMLFKDTCNRKSNQQNL 420
D WG EFE+LYT YEREG+ K ++AQ LW+ IL +Q ETGTP+M++KD CNRK+NQQNL
Sbjct: 361 DVWGDEFEELYTRYEREGRG-KTIKAQKLWYAILQAQTETGTPFMVYKDACNRKTNQQNL 419
Query: 421 GTIKSSNLCTEIIEYTSPTETAVCNLASIALPRFVREKDVPVESHPSRIVGSRGSKNRFF 480
GTIKSSNLC EI+EY+SP ETAVCNLASIALP FV S K +
Sbjct: 420 GTIKSSNLCCEIVEYSSPDETAVCNLASIALPAFVEV--------------SEDGKTASY 465
Query: 481 DFEKLAEVTAIVTENLNKIIDVNYYPVETARRSNLRHRPIGIGVQGLADTFILLGMAFES 540
+FE+L E+ ++T NLN++ID NYYPV AR SN++HRPI +GVQGLADT+++L + FES
Sbjct: 466 NFERLHEIAKVITHNLNRVIDRNYYPVPEARNSNMKHRPIALGVQGLADTYMMLRLPFES 525
Query: 541 PEAQQLNKDIFETIYYHALKTSSEIAAKEGPYETYHNSPVSKGILQPDMWNVIPSDRWDW 600
EAQ LNK IFETIY+ L+ S E+A KEG Y T+ SP SKGILQ DMWN P WDW
Sbjct: 526 EEAQTLNKQIFETIYHATLEASCELAQKEGKYSTFEGSPASKGILQFDMWNAKPFGMWDW 585
Query: 601 GVLRDMISKNGVRNSLLVAPMPTASTSQILGNNECFEPYTSNIYSRRVLSGEFVVVNKHL 660
LR I K+G+RNSL +APMPTASTSQILG NECFEP TSN+YSRRVLSGEF VVN +L
Sbjct: 586 ETLRKDIVKHGLRNSLTMAPMPTASTSQILGYNECFEPVTSNMYSRRVLSGEFQVVNPYL 645
Query: 661 LHDLTEMGIWSPTIKNKIIYDDGSVQKIPEIPEELKMIYKTVWEIKQMTLVDMAVDRGCY 720
L DL ++GIW ++K +I +GS+Q +P +P+ELK +YKTVWEI Q T+++MA DR Y
Sbjct: 646 LRDLVDLGIWDDSMKQYLITQNGSIQGLPNVPQELKELYKTVWEISQKTIINMAADRAIY 705
Query: 721 IDQSQSLNIHMDQPNFKKVTSLHFRTWSRGLKTGMYYLRSRAAADAIKFTVDTSV 775
IDQS SLN+ + P+ K+TS+HF W +GLKTGMYYLR++AA+ AI+FT+D V
Sbjct: 706 IDQSHSLNLFLQAPSMGKITSMHFYGWKKGLKTGMYYLRTQAASAAIQFTIDQEV 760
>sp|P50648|RIR1_PLAF4 Ribonucleoside-diphosphate reductase large subunit OS=Plasmodium
falciparum (isolate Dd2) GN=RNR1 PE=2 SV=1
Length = 806
Score = 1053 bits (2724), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 506/824 (61%), Positives = 622/824 (75%), Gaps = 35/824 (4%)
Query: 1 MYVVKRDGRQEAVHFDKITARLKKLSYGLSTEHCDPVLVSQKVCAGVYKGVTTSQLDELA 60
MYV+ R G +E + FD+I R+++LSYGL E DP V+Q V G+Y G+ T +LDELA
Sbjct: 1 MYVLNRKGEEEDISFDQILKRIQRLSYGLH-ELVDPARVTQGVINGMYSGIKTCELDELA 59
Query: 61 AETAAAMTTNHPDYASLAARIAVSNLHKNTKKSFSETIKDMYNHYNERSGLKAPLIADDI 120
A+T A M T HPD++ LAARI NLHKNT +E + +Y Y + G A LI+ ++
Sbjct: 60 AQTCAYMATTHPDFSILAARITTDNLHKNTSDDVAEVAEALYT-YKDVRGRPASLISKEV 118
Query: 121 YEIIMKNAACLDSEIIYDRDFDYDYFGFKTLERSYLLKVQGKVVERPQHMLMRVSIGIHK 180
Y+ I+ + L+ EI Y RDF+YDYFGFKTLERSYLL++ K++ERPQH+LMRVSIGIH
Sbjct: 119 YDFILLHKDRLNKEIDYTRDFNYDYFGFKTLERSYLLRINNKIIERPQHLLMRVSIGIHI 178
Query: 181 DDIDSAIKTYHMMSQRWFTHASPTLFNAGTPRPQLSSCFLVCMKDDSIEGIYETLKECAV 240
DDID A++TYH+MSQ++FTHA+PTLFN+GTPRPQ+SSCFL+ MK DSIEGI+ETLK+CA+
Sbjct: 179 DDIDKALETYHLMSQKYFTHATPTLFNSGTPRPQMSSCFLLSMKADSIEGIFETLKQCAL 238
Query: 241 ISKSAGGIGVSVHNIRATGSYIRGTNGTSNGIVPMLRVFNDTARYVDQGGGKRKGAFAVY 300
ISK+AGGIGV+V +IR SYIRGTNG SNG+VPMLRVFNDTARYVDQGGGKRKG+FAVY
Sbjct: 239 ISKTAGGIGVAVQDIRGQNSYIRGTNGISNGLVPMLRVFNDTARYVDQGGGKRKGSFAVY 298
Query: 301 LEPWHADIFEFLNLKKNHGKEEHRARDLFYALWVPDLFMERVQTNGQWSLFCPNEASGLA 360
+EPWH+DIFEFL+L+KNHGKEE RARDLFYA+WVPDLFM+RV+ N W+L CPNE GL+
Sbjct: 299 IEPWHSDIFEFLDLRKNHGKEELRARDLFYAVWVPDLFMKRVKENKNWTLMCPNECPGLS 358
Query: 361 DCWGAEFEKLYTHYEREGKAKKVVQAQNLWFEILTSQIETGTPYMLFKDTCNRKSNQQNL 420
+ WG EFEKLYT YE E KK V AQ+LWF IL SQIETG PYML+KD+CN KSNQ+NL
Sbjct: 359 ETWGEEFEKLYTKYEEENMGKKTVLAQDLWFAILQSQIETGVPYMLYKDSCNAKSNQKNL 418
Query: 421 GTIKSSNLCTEIIEYTSPTETAVCNLASIALPRFVREKDVPVESHPSRIVGSRGSKNRFF 480
GTIK SNLC EIIEYTSP E AVCNLASIAL +FV + + F
Sbjct: 419 GTIKCSNLCCEIIEYTSPDEVAVCNLASIALCKFV------------------DLEKKEF 460
Query: 481 DFEKLAEVTAIVTENLNKIIDVNYYPVETARRSNLRHRPIGIGVQGLADTFILLGMAFES 540
+F+KL E+T I+T NL+KII+ NYYPV+ A+ SN RHRPIGIGVQGLADTF+LL +ES
Sbjct: 461 NFKKLYEITKIITRNLDKIIERNYYPVKEAKTSNTRHRPIGIGVQGLADTFMLLRYPYES 520
Query: 541 PEAQQLNKDIFETIYYHALKTSSEIAAKEGPYETYHNSPVSKGILQPDMWNV-IPSDRWD 599
A++LNK IFET+YY AL+ S E+A+ GPYE+Y SP S+GILQ DMWN + + WD
Sbjct: 521 DAAKELNKRIFETMYYAALEMSVELASIHGPYESYQGSPASQGILQFDMWNAKVDNKYWD 580
Query: 600 WGVLRDMISKNGVRNSLLVAPMPTASTSQILGNNECFEPYTSNIYSRRVLSGEFVVVNKH 659
W L+ I K+G+RNSLL+APMPTASTSQILGNNE FEPYTSNIY RRVLSGEF VVN H
Sbjct: 581 WDELKAKIRKHGLRNSLLLAPMPTASTSQILGNNESFEPYTSNIYYRRVLSGEFFVVNPH 640
Query: 660 LLHDLTEMGIWSPTIKNKIIYDDGSVQKIPEIPEELKMIYKTVWEIKQMTLVDMAVDRGC 719
LL DL + G+W +K ++I +GS+Q I EIP++LK +YKTVWEIKQ ++DMA DRG
Sbjct: 641 LLKDLFDRGLWDEDMKQQLIAHNGSIQYISEIPDDLKELYKTVWEIKQKNIIDMAADRGI 700
Query: 720 YIDQSQSLNIHMDQPNFKKVTSLHFRTWSRGLKTGMYYLRSRAAADAIKFTVDTSVFKEK 779
+IDQSQSLNI++ +P F K++S+HF W +GLKTG YYLR++AA DAIKFTVDT V K
Sbjct: 701 FIDQSQSLNIYIQKPTFAKLSSMHFYGWEKGLKTGAYYLRTQAATDAIKFTVDTHVAKNA 760
Query: 780 ------------PEKPELVVDDETKMAQVVCSL--TNREECMAC 809
E + E+ + Q VC L N E+C+ C
Sbjct: 761 VKLKNADGVQITREVSRETISTESTVTQNVCPLRRNNDEQCLMC 804
>sp|P12848|RIR1_VACCW Ribonucleoside-diphosphate reductase large subunit OS=Vaccinia
virus (strain Western Reserve) GN=VACWR073 PE=1 SV=1
Length = 771
Score = 1033 bits (2671), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 493/790 (62%), Positives = 612/790 (77%), Gaps = 26/790 (3%)
Query: 1 MYVVKRDGRQEAVHFDKITARLKKLSYGLSTEHCDPVLVSQKVCAGVYKGVTTSQLDELA 60
M+V+KR+G +E V FDKIT+R++KL YGL+T+H DP+ ++ KV G+Y GVTT +LD LA
Sbjct: 1 MFVIKRNGYKENVMFDKITSRIRKLCYGLNTDHIDPIKIAMKVIQGIYNGVTTVELDTLA 60
Query: 61 AETAAAMTTNHPDYASLAARIAVSNLHKNTKKSFSETIKDMYNHYNERSGLKAPLIADDI 120
AE AA TT HPDYA LAARIAVSNLHK TKK FSE ++D++N+ N ++G +P+I+
Sbjct: 61 AEIAATCTTQHPDYAILAARIAVSNLHKETKKLFSEVMEDLFNYVNPKNGKHSPIISSIT 120
Query: 121 YEIIMKNAACLDSEIIYDRDFDYDYFGFKTLERSYLLKVQGKVVERPQHMLMRVSIGIHK 180
+I+ K L+S IIY+RDF Y+YFGFKTLE+SYLLK+ K+VERPQHMLMRV++GIH+
Sbjct: 121 MDIVNKYKDKLNSVIIYERDFSYNYFGFKTLEKSYLLKINNKIVERPQHMLMRVAVGIHQ 180
Query: 181 DDIDSAIKTYHMMSQRWFTHASPTLFNAGTPRPQLSSCFLVCMKDDSIEGIYETLKECAV 240
DIDSAI+TY+++S++WFTHASPTLFNAGT R Q+SSCFL+ M DDSIEGIY+TLK CA+
Sbjct: 181 WDIDSAIETYNLLSEKWFTHASPTLFNAGTSRHQMSSCFLLNMIDDSIEGIYDTLKRCAL 240
Query: 241 ISKSAGGIGVSVHNIRATGSYIRGTNGTSNGIVPMLRVFNDTARYVDQGGGKRKGAFAVY 300
ISK AGGIG+S+ NIRA+GSYI GTNG SNGI+PMLRV+N+TARY+DQGG KR G A+Y
Sbjct: 241 ISKMAGGIGLSISNIRASGSYISGTNGISNGIIPMLRVYNNTARYIDQGGNKRPGVMAIY 300
Query: 301 LEPWHADIFEFLNLKKNHGKEEHRARDLFYALWVPDLFMERVQTNGQWSLFCPNEASGLA 360
LEPWH+DI FL+LKKN G EEHR RDLF ALW+PDLFM+RV+ +G+WSL CP+E GL
Sbjct: 301 LEPWHSDIMAFLDLKKNTGNEEHRTRDLFIALWIPDLFMKRVKDDGEWSLMCPDECPGLD 360
Query: 361 DCWGAEFEKLYTHYEREGKAKKVVQAQNLWFEILTSQIETGTPYMLFKDTCNRKSNQQNL 420
+ WG EFE+LYT YERE + K +++A+ +W I+ SQIETGTP++L+KD CN+KSNQQNL
Sbjct: 361 NVWGDEFERLYTLYERERRYKSIIKARVVWKAIIESQIETGTPFILYKDACNKKSNQQNL 420
Query: 421 GTIKSSNLCTEIIEYTSPTETAVCNLASIALPRFVREKDVPVESHPSRIVGSRGSKNRFF 480
GTIK SNLCTEII+Y E AVCNLAS+AL FV + R F
Sbjct: 421 GTIKCSNLCTEIIQYADANEVAVCNLASVALNMFV--------------IDGR------F 460
Query: 481 DFEKLAEVTAIVTENLNKIIDVNYYPVETARRSNLRHRPIGIGVQGLADTFILLGMAFES 540
DF KL +V ++ NLNKIID+NYYP+ A SN RHRPIGIGVQGLAD FILL F+S
Sbjct: 461 DFLKLKDVVKVIVRNLNKIIDINYYPIPEAEISNKRHRPIGIGVQGLADAFILLNYPFDS 520
Query: 541 PEAQQLNKDIFETIYYHALKTSSEIAAKEGPYETYHNSPVSKGILQPDMWNVIPSDRWDW 600
EAQ LNK IFETIYY AL+ S E+A KEGPY+TY S S GILQ D+WNV+PSD W+W
Sbjct: 521 LEAQDLNKKIFETIYYGALEASCELAEKEGPYDTYVGSYASNGILQYDLWNVVPSDLWNW 580
Query: 601 GVLRDMISKNGVRNSLLVAPMPTASTSQILGNNECFEPYTSNIYSRRVLSGEFVVVNKHL 660
L+D I G+RNSLLVAPMPTAST+QILGNNE EPYTSNIY+RRVLSGEF VVN HL
Sbjct: 581 EPLKDKIRTYGLRNSLLVAPMPTASTAQILGNNESVEPYTSNIYTRRVLSGEFQVVNPHL 640
Query: 661 LHDLTEMGIWSPTIKNKIIYDDGSVQKIPEIPEELKMIYKTVWEIKQMTLVDMAVDRGCY 720
L LTE +W+ IKN+I+ D GS+Q +PE++K +YKT+WEI Q T++ MA DRG +
Sbjct: 641 LRVLTERKLWNDEIKNRIMADGGSIQNT-NLPEDIKRVYKTIWEIPQKTIIKMAADRGAF 699
Query: 721 IDQSQSLNIHMDQPNFKKVTSLHFRTWSRGLKTGMYYLRSRAAADAIKFTVDTSVFKEKP 780
IDQSQS+NIH+ P++ K+TS+HF WS GLKTGMYYLR++ A+ I+FT+D K+K
Sbjct: 700 IDQSQSMNIHIADPSYSKLTSMHFYGWSLGLKTGMYYLRTKPASAPIQFTLD----KDKI 755
Query: 781 EKPELVVDDE 790
KP +V D E
Sbjct: 756 -KPPVVCDSE 764
>sp|P32984|RIR1_VAR67 Ribonucleoside-diphosphate reductase large subunit OS=Variola virus
(isolate Human/India/Ind3/1967) GN=I4L PE=2 SV=1
Length = 771
Score = 1033 bits (2670), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 491/790 (62%), Positives = 609/790 (77%), Gaps = 26/790 (3%)
Query: 1 MYVVKRDGRQEAVHFDKITARLKKLSYGLSTEHCDPVLVSQKVCAGVYKGVTTSQLDELA 60
M+V+KR+G +E V FDKIT+R++KL YGL+T+H DP+ ++ KV G+Y GVTT +LD L
Sbjct: 1 MFVIKRNGYKENVMFDKITSRIRKLCYGLNTDHIDPIKIAMKVIQGIYNGVTTVELDTLT 60
Query: 61 AETAAAMTTNHPDYASLAARIAVSNLHKNTKKSFSETIKDMYNHYNERSGLKAPLIADDI 120
AE AA TT HPDYA LAARIAVSNLHK TKK FSE +KD++N+ N ++G +P+I+
Sbjct: 61 AEIAATCTTQHPDYAILAARIAVSNLHKETKKLFSEVMKDLFNYVNPKNGKHSPIISSIT 120
Query: 121 YEIIMKNAACLDSEIIYDRDFDYDYFGFKTLERSYLLKVQGKVVERPQHMLMRVSIGIHK 180
+++ K L+S IIY+RDF Y+YFGFKTLE+SYLLK+ K+VERPQHMLMRV++GIH+
Sbjct: 121 MDVVNKYKDKLNSVIIYERDFSYNYFGFKTLEKSYLLKINNKIVERPQHMLMRVAVGIHQ 180
Query: 181 DDIDSAIKTYHMMSQRWFTHASPTLFNAGTPRPQLSSCFLVCMKDDSIEGIYETLKECAV 240
DIDSAI+TY+++S++WFTHASPTLFNAGT R Q+SSCFL+ M DDSIEGIY+TLK CA+
Sbjct: 181 WDIDSAIETYNLLSEKWFTHASPTLFNAGTSRHQMSSCFLLNMMDDSIEGIYDTLKRCAL 240
Query: 241 ISKSAGGIGVSVHNIRATGSYIRGTNGTSNGIVPMLRVFNDTARYVDQGGGKRKGAFAVY 300
ISK AGGIG+S+ NIRA+GSYI GTNG SNGI+PMLRV+N+TARY+DQGG KR G +Y
Sbjct: 241 ISKMAGGIGLSISNIRASGSYISGTNGASNGIIPMLRVYNNTARYIDQGGNKRPGVMTIY 300
Query: 301 LEPWHADIFEFLNLKKNHGKEEHRARDLFYALWVPDLFMERVQTNGQWSLFCPNEASGLA 360
LEPWH+DI FL+LKKN G EEHR RDLF ALW+PDLFM+RV+ +G+WSL CP+E GL
Sbjct: 301 LEPWHSDIMAFLDLKKNTGNEEHRTRDLFIALWIPDLFMKRVKDDGEWSLMCPDECPGLD 360
Query: 361 DCWGAEFEKLYTHYEREGKAKKVVQAQNLWFEILTSQIETGTPYMLFKDTCNRKSNQQNL 420
+ WG EFE+LYT YERE + K +++A+ +W I+ SQIETGTP++L+KD CN+KSNQQNL
Sbjct: 361 NVWGDEFERLYTLYEREKRYKSIIKARVVWKAIIESQIETGTPFILYKDACNKKSNQQNL 420
Query: 421 GTIKSSNLCTEIIEYTSPTETAVCNLASIALPRFVREKDVPVESHPSRIVGSRGSKNRFF 480
GTIK SNLCTEII+Y E AVCNLASIAL FV + F
Sbjct: 421 GTIKCSNLCTEIIQYADANEVAVCNLASIALNMFVIDGQ--------------------F 460
Query: 481 DFEKLAEVTAIVTENLNKIIDVNYYPVETARRSNLRHRPIGIGVQGLADTFILLGMAFES 540
DF KL +V ++ NLNKIID+NYYP+ A SN RHRPIGIGVQGLAD FILL F+S
Sbjct: 461 DFLKLKDVVKVIVRNLNKIIDINYYPIPEAEISNKRHRPIGIGVQGLADAFILLNYPFDS 520
Query: 541 PEAQQLNKDIFETIYYHALKTSSEIAAKEGPYETYHNSPVSKGILQPDMWNVIPSDRWDW 600
EAQ LNK IFETIYY AL+ S E+A KEGPY+TY S S GILQ D+WNV+PSD W+W
Sbjct: 521 LEAQDLNKKIFETIYYGALEASCELAEKEGPYDTYVGSYASNGILQYDLWNVVPSDLWNW 580
Query: 601 GVLRDMISKNGVRNSLLVAPMPTASTSQILGNNECFEPYTSNIYSRRVLSGEFVVVNKHL 660
L+D I G+RNSLLVAPMPTAST+QILGNNE EPYTSNIY+RRVLSGEF VVN HL
Sbjct: 581 EPLKDKIRTYGLRNSLLVAPMPTASTAQILGNNESVEPYTSNIYTRRVLSGEFQVVNPHL 640
Query: 661 LHDLTEMGIWSPTIKNKIIYDDGSVQKIPEIPEELKMIYKTVWEIKQMTLVDMAVDRGCY 720
L LTE +W+ IKN+I+ D GS+Q +PE++K +YKT+WEI Q T++ MA DRG +
Sbjct: 641 LRVLTERKLWNDEIKNRIMVDGGSIQNT-NLPEDIKRVYKTIWEIPQKTIIKMAADRGAF 699
Query: 721 IDQSQSLNIHMDQPNFKKVTSLHFRTWSRGLKTGMYYLRSRAAADAIKFTVDTSVFKEKP 780
IDQSQS+NIH+ P++ K+TS+HF WS GLKTGMYYLR++ A+ I+FT+D K+K
Sbjct: 700 IDQSQSMNIHIADPSYSKLTSMHFYGWSLGLKTGMYYLRTKPASAPIQFTLD----KDKI 755
Query: 781 EKPELVVDDE 790
KP +V D E
Sbjct: 756 -KPLVVCDSE 764
>sp|P20503|RIR1_VACCC Ribonucleoside-diphosphate reductase large subunit OS=Vaccinia
virus (strain Copenhagen) GN=I4L PE=2 SV=1
Length = 771
Score = 1032 bits (2669), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 493/790 (62%), Positives = 612/790 (77%), Gaps = 26/790 (3%)
Query: 1 MYVVKRDGRQEAVHFDKITARLKKLSYGLSTEHCDPVLVSQKVCAGVYKGVTTSQLDELA 60
M+V+KR+G +E V FDKIT+R++KL YGL+T+H DP+ ++ KV G+Y GVTT +LD LA
Sbjct: 1 MFVIKRNGYKENVMFDKITSRIRKLCYGLNTDHIDPIKIAMKVIQGIYNGVTTVELDTLA 60
Query: 61 AETAAAMTTNHPDYASLAARIAVSNLHKNTKKSFSETIKDMYNHYNERSGLKAPLIADDI 120
AE AA TT HPDYA LAARIAVSNLHK TKK FSE ++D++N+ N ++G +P+I+
Sbjct: 61 AEIAATCTTQHPDYAILAARIAVSNLHKETKKLFSEVMEDLFNYVNPKNGKHSPIISSIT 120
Query: 121 YEIIMKNAACLDSEIIYDRDFDYDYFGFKTLERSYLLKVQGKVVERPQHMLMRVSIGIHK 180
+I+ K L+S IIY+RDF Y+YFGFKTLE+SYLLK+ K+VERPQHMLMRV++GIH+
Sbjct: 121 MDIVNKYKDKLNSVIIYERDFSYNYFGFKTLEKSYLLKINNKIVERPQHMLMRVAVGIHQ 180
Query: 181 DDIDSAIKTYHMMSQRWFTHASPTLFNAGTPRPQLSSCFLVCMKDDSIEGIYETLKECAV 240
DIDSAI+TY+++S++WFTHASPTLFNAGT R Q+SSCFL+ M DDSIEGIY+TLK CA+
Sbjct: 181 WDIDSAIETYNLLSEKWFTHASPTLFNAGTSRHQMSSCFLLNMIDDSIEGIYDTLKRCAL 240
Query: 241 ISKSAGGIGVSVHNIRATGSYIRGTNGTSNGIVPMLRVFNDTARYVDQGGGKRKGAFAVY 300
ISK AGGIG+S+ NIRA+GSYI GTNG SNGI+PMLRV+N+TARY+DQGG KR G A+Y
Sbjct: 241 ISKMAGGIGLSISNIRASGSYISGTNGISNGIIPMLRVYNNTARYIDQGGNKRPGVMAIY 300
Query: 301 LEPWHADIFEFLNLKKNHGKEEHRARDLFYALWVPDLFMERVQTNGQWSLFCPNEASGLA 360
LEPWH+DI FL+LKKN G EEHR RDLF ALW+PDLFM+RV+ +G+WSL CP+E GL
Sbjct: 301 LEPWHSDIMAFLDLKKNTGNEEHRTRDLFIALWIPDLFMKRVKDDGEWSLMCPDECPGLD 360
Query: 361 DCWGAEFEKLYTHYEREGKAKKVVQAQNLWFEILTSQIETGTPYMLFKDTCNRKSNQQNL 420
+ WG EFE+LYT YERE + K +++A+ +W I+ SQIETGTP++L+KD CN+KSNQQNL
Sbjct: 361 NVWGDEFERLYTLYERERRYKSIIKARVVWKAIIESQIETGTPFILYKDACNKKSNQQNL 420
Query: 421 GTIKSSNLCTEIIEYTSPTETAVCNLASIALPRFVREKDVPVESHPSRIVGSRGSKNRFF 480
GTIK SNLCTEII+Y E AVCNLAS+AL FV + R F
Sbjct: 421 GTIKCSNLCTEIIQYADANEVAVCNLASVALNMFV--------------IDGR------F 460
Query: 481 DFEKLAEVTAIVTENLNKIIDVNYYPVETARRSNLRHRPIGIGVQGLADTFILLGMAFES 540
DF KL +V ++ NLNKIID+NYYP+ A SN RHRPIGIGVQGLAD FILL F+S
Sbjct: 461 DFLKLKDVVKVIVRNLNKIIDINYYPIPEAEISNKRHRPIGIGVQGLADAFILLNYPFDS 520
Query: 541 PEAQQLNKDIFETIYYHALKTSSEIAAKEGPYETYHNSPVSKGILQPDMWNVIPSDRWDW 600
EAQ LNK IFETIYY AL+ S E+A KEGPY+TY S S GILQ D+WNV+PSD W+W
Sbjct: 521 LEAQDLNKKIFETIYYGALEASCELAEKEGPYDTYVGSYASNGILQYDLWNVVPSDLWNW 580
Query: 601 GVLRDMISKNGVRNSLLVAPMPTASTSQILGNNECFEPYTSNIYSRRVLSGEFVVVNKHL 660
L+D I G+RNSLLVAPMPTAST+QILGNNE EPYTSNIY+RRVLSGEF VVN HL
Sbjct: 581 EPLKDKIRTYGLRNSLLVAPMPTASTAQILGNNESVEPYTSNIYTRRVLSGEFQVVNPHL 640
Query: 661 LHDLTEMGIWSPTIKNKIIYDDGSVQKIPEIPEELKMIYKTVWEIKQMTLVDMAVDRGCY 720
L LTE +W+ IKN+I+ D GS+Q +PE++K +YKT+WEI Q T++ MA DRG +
Sbjct: 641 LRVLTERKLWNDEIKNRIMADGGSIQNT-NLPEDIKRVYKTIWEIPQKTIIKMAADRGAF 699
Query: 721 IDQSQSLNIHMDQPNFKKVTSLHFRTWSRGLKTGMYYLRSRAAADAIKFTVDTSVFKEKP 780
IDQSQS+NIH+ P++ K+TS+HF WS GLKTGMYYLR++ A+ I+FT+D K+K
Sbjct: 700 IDQSQSMNIHIADPSYSKLTSMHFYGWSLGLKTGMYYLRTKPASAPIQFTLD----KDKI 755
Query: 781 EKPELVVDDE 790
KP +V D E
Sbjct: 756 -KPLVVCDSE 764
>sp|Q76RD8|RIR1_VACCA Ribonucleoside-diphosphate reductase large subunit OS=Vaccinia
virus (strain Ankara) GN=MVA065L PE=2 SV=1
Length = 771
Score = 1032 bits (2669), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 493/790 (62%), Positives = 612/790 (77%), Gaps = 26/790 (3%)
Query: 1 MYVVKRDGRQEAVHFDKITARLKKLSYGLSTEHCDPVLVSQKVCAGVYKGVTTSQLDELA 60
M+V+KR+G +E V FDKIT+R++KL YGL+T+H DP+ ++ KV G+Y GVTT +LD LA
Sbjct: 1 MFVIKRNGYKENVMFDKITSRIRKLCYGLNTDHIDPIKIAMKVIQGIYNGVTTVELDTLA 60
Query: 61 AETAAAMTTNHPDYASLAARIAVSNLHKNTKKSFSETIKDMYNHYNERSGLKAPLIADDI 120
AE AA TT HPDYA LAARIAVSNLHK TKK FSE ++D++N+ N ++G +P+I+
Sbjct: 61 AEIAATCTTQHPDYAILAARIAVSNLHKETKKLFSEVMEDLFNYVNPKNGKHSPIISSIT 120
Query: 121 YEIIMKNAACLDSEIIYDRDFDYDYFGFKTLERSYLLKVQGKVVERPQHMLMRVSIGIHK 180
+I+ K L+S IIY+RDF Y+YFGFKTLE+SYLLK+ K+VERPQHMLMRV++GIH+
Sbjct: 121 MDIVNKYKDKLNSVIIYERDFSYNYFGFKTLEKSYLLKINNKIVERPQHMLMRVAVGIHQ 180
Query: 181 DDIDSAIKTYHMMSQRWFTHASPTLFNAGTPRPQLSSCFLVCMKDDSIEGIYETLKECAV 240
DIDSAI+TY+++S++WFTHASPTLFNAGT R Q+SSCFL+ M DDSIEGIY+TLK CA+
Sbjct: 181 WDIDSAIETYNLLSEKWFTHASPTLFNAGTSRHQMSSCFLLNMIDDSIEGIYDTLKRCAL 240
Query: 241 ISKSAGGIGVSVHNIRATGSYIRGTNGTSNGIVPMLRVFNDTARYVDQGGGKRKGAFAVY 300
ISK AGGIG+S+ NIRA+GSYI GTNG SNGI+PMLRV+N+TARY+DQGG KR G A+Y
Sbjct: 241 ISKMAGGIGLSISNIRASGSYISGTNGISNGIIPMLRVYNNTARYIDQGGNKRPGVMAIY 300
Query: 301 LEPWHADIFEFLNLKKNHGKEEHRARDLFYALWVPDLFMERVQTNGQWSLFCPNEASGLA 360
LEPWH+DI FL+LKKN G EEHR RDLF ALW+PDLFM+RV+ +G+WSL CP+E GL
Sbjct: 301 LEPWHSDIMAFLDLKKNTGNEEHRTRDLFIALWIPDLFMKRVKDDGEWSLMCPDECPGLD 360
Query: 361 DCWGAEFEKLYTHYEREGKAKKVVQAQNLWFEILTSQIETGTPYMLFKDTCNRKSNQQNL 420
+ WG EFE+LYT YERE + K +++A+ +W I+ SQIETGTP++L+KD CN+KSNQQNL
Sbjct: 361 NVWGDEFERLYTLYERERRYKSIIKARVVWKAIIESQIETGTPFILYKDACNKKSNQQNL 420
Query: 421 GTIKSSNLCTEIIEYTSPTETAVCNLASIALPRFVREKDVPVESHPSRIVGSRGSKNRFF 480
GTIK SNLCTEII+Y E AVCNLAS+AL FV + R F
Sbjct: 421 GTIKCSNLCTEIIQYADANEVAVCNLASVALNMFV--------------IDGR------F 460
Query: 481 DFEKLAEVTAIVTENLNKIIDVNYYPVETARRSNLRHRPIGIGVQGLADTFILLGMAFES 540
DF KL +V ++ NLNKIID+NYYP+ A SN RHRPIGIGVQGLAD FILL F+S
Sbjct: 461 DFLKLKDVVKVIVRNLNKIIDINYYPIPEAEISNKRHRPIGIGVQGLADAFILLNYPFDS 520
Query: 541 PEAQQLNKDIFETIYYHALKTSSEIAAKEGPYETYHNSPVSKGILQPDMWNVIPSDRWDW 600
EAQ LNK IFETIYY AL+ S E+A KEGPY+TY S S GILQ D+WNV+PSD W+W
Sbjct: 521 LEAQDLNKKIFETIYYGALEASCELAEKEGPYDTYVGSYASNGILQYDLWNVVPSDLWNW 580
Query: 601 GVLRDMISKNGVRNSLLVAPMPTASTSQILGNNECFEPYTSNIYSRRVLSGEFVVVNKHL 660
L+D I G+RNSLLVAPMPTAST+QILGNNE EPYTSNIY+RRVLSGEF VVN HL
Sbjct: 581 EPLKDKIRTYGLRNSLLVAPMPTASTAQILGNNESVEPYTSNIYTRRVLSGEFQVVNPHL 640
Query: 661 LHDLTEMGIWSPTIKNKIIYDDGSVQKIPEIPEELKMIYKTVWEIKQMTLVDMAVDRGCY 720
L LTE +W+ IKN+I+ D GS+Q +PE++K +YKT+WEI Q T++ MA DRG +
Sbjct: 641 LRVLTERKLWNDEIKNRIMADGGSIQNT-NLPEDIKRVYKTIWEIPQKTIIKMAADRGAF 699
Query: 721 IDQSQSLNIHMDQPNFKKVTSLHFRTWSRGLKTGMYYLRSRAAADAIKFTVDTSVFKEKP 780
IDQSQS+NIH+ P++ K+TS+HF WS GLKTGMYYLR++ A+ I+FT+D K+K
Sbjct: 700 IDQSQSMNIHIADPSYSKLTSMHFYGWSLGLKTGMYYLRTKPASAPIQFTLD----KDKI 755
Query: 781 EKPELVVDDE 790
KP +V D E
Sbjct: 756 -KPLVVCDSE 764
>sp|P50647|RIR1_PLAFG Ribonucleoside-diphosphate reductase large subunit OS=Plasmodium
falciparum (isolate FCR-3 / Gambia) GN=RNR1 PE=3 SV=1
Length = 804
Score = 1002 bits (2590), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 481/778 (61%), Positives = 594/778 (76%), Gaps = 22/778 (2%)
Query: 1 MYVVKRDGRQEAVHFDKITARLKKLSYGLSTEHCDPVLVSQKVCAGVYKGVTTSQLDELA 60
MYV+ R G +E + FD+I R+++LSYGL P V+Q V G+Y + T +LDELA
Sbjct: 1 MYVLNRKGEEEDISFDQILKRIQRLSYGLHKLGEYPACVTQGVINGMYSSIKTCELDELA 60
Query: 61 AETAAAMTTNHPDYASLAARIAVSNLHKNTKKSFSETIKDMYNHYNERSGLKAPLIADDI 120
A+T A M T HPD++ LAARI NLHKNT +E + +Y Y + G A LI+ ++
Sbjct: 61 AQTCAYMATTHPDFSILAARITTDNLHKNTSDDVAEVAEALYT-YKDGRGRPASLISKEV 119
Query: 121 YEIIMKNAACLDSEIIYDRDFDYDYFGFKTLERSYLLKVQGKVVERPQHMLMRVSIGIHK 180
Y+ I+ + L+ EI Y F+YDYFGFKTLERSYLL++ K++ERPQH+LMRVSIGIH
Sbjct: 120 YDFILLHKVRLNKEIDYTTHFNYDYFGFKTLERSYLLRINNKIIERPQHLLMRVSIGIHI 179
Query: 181 DDIDSAIKTYHMMSQRWFTHASPTLFNAGTPRPQLSSCFLVCMKDDSIEGIYETLKECAV 240
DDID A++TYH+MSQ++FTHA+PTLFN+GTPRPQ+SSCFL+ MK DSIEGI+ETLK+CA+
Sbjct: 180 DDIDKALETYHLMSQKYFTHATPTLFNSGTPRPQMSSCFLLSMKADSIEGIFETLKQCAL 239
Query: 241 ISKSAGGIGVSVHNIRATGSYIRGTNGTSNGIVPMLRVFNDTARYVDQGGGKRKGAFAVY 300
ISK+AGGIGV+V +IR SYIRGTNG SNG+VPMLRVFNDTARYVDQGGGKRKG++AVY
Sbjct: 240 ISKTAGGIGVAVQDIRGQNSYIRGTNGISNGLVPMLRVFNDTARYVDQGGGKRKGSYAVY 299
Query: 301 LEPWHADIFEFLNLKKNHGKEEHRARDLFYALWVPDLFMERVQTNGQWSLFCPNEASGLA 360
+EPWH+DIFEFL+L+KNHGKEE RARDLFYA+WVPDLFM+RV+ N W+L CPNE GL+
Sbjct: 300 IEPWHSDIFEFLDLRKNHGKEELRARDLFYAVWVPDLFMKRVKENKNWTLMCPNECPGLS 359
Query: 361 DCWGAEFEKLYTHYEREGKAKKVVQAQNLWFEILTSQIETGTPYMLFKDTCNRKSNQQNL 420
+ WG EFEKLYT YE E KK V AQ+LWF IL SQIETG P L+KD+CN K +NL
Sbjct: 360 ETWGEEFEKLYTKYEEENMGKKTVLAQDLWFAILQSQIETGVPIYLYKDSCNAKP-IKNL 418
Query: 421 GTIKSSNLCTEIIEYTSPTETAVCNLASIALPRFVREKDVPVESHPSRIVGSRGSKNRFF 480
GTIK SNLC EIIEYTSP E AVCNLASIAL +FV + + F
Sbjct: 419 GTIKCSNLCCEIIEYTSPDEVAVCNLASIALCKFV------------------DLEKKEF 460
Query: 481 DFEKLAEVTAIVTENLNKIIDVNYYPVETARRSNLRHRPIGIGVQGLADTFILLGMAFES 540
+F+KL E+T I+T NL+KII+ NYYPV+ A+ SN RHRPIGIGVQGLADTF+LL +ES
Sbjct: 461 NFKKLYEITKIITRNLDKIIERNYYPVKEAKTSNTRHRPIGIGVQGLADTFMLLRYLYES 520
Query: 541 PEAQQLNKDIFETIYYHALKTSSEIAAKEGPYETYHNSPVSKGILQPDMWNV-IPSDRWD 599
A++LNK I+ET+YY AL+ S + + GPYE+Y SP S+GILQ DMWN + + WD
Sbjct: 521 DAAKELNKRIYETMYYAALEMSVD-WLQSGPYESYQGSPGSQGILQFDMWNAKVDNKYWD 579
Query: 600 WGVLRDMISKNGVRNSLLVAPMPTASTSQILGNNECFEPYTSNIYSRRVLSGEFVVVNKH 659
W L+ I+K G+RN LL+APMPTASTSQILGNNE FEPYTSNIY RRVLSGEF VVN H
Sbjct: 580 WDELKLKIAKTGLRNLLLLAPMPTASTSQILGNNESFEPYTSNIYYRRVLSGEFFVVNPH 639
Query: 660 LLHDLTEMGIWSPTIKNKIIYDDGSVQKIPEIPEELKMIYKTVWEIKQMTLVDMAVDRGC 719
LL DL + G+W +K ++I +GS+Q I EIP++LK +YKTVWEIKQ ++DMA DRG
Sbjct: 640 LLKDLFDRGLWDEDMKQQLIAHNGSIQYISEIPDDLKELYKTVWEIKQKNIIDMAADRGY 699
Query: 720 YIDQSQSLNIHMDQPNFKKVTSLHFRTWSRGLKTGMYYLRSRAAADAIKFTVDTSVFK 777
+IDQSQSLNI++ +P F K++S+HF W +GLKTG YYLR++AA DAIKFTVDT V K
Sbjct: 700 FIDQSQSLNIYIQKPTFAKLSSMHFYGWEKGLKTGAYYLRTQAATDAIKFTVDTHVAK 757
>sp|O61065|RIR1_CRYPV Ribonucleoside-diphosphate reductase large chain OS=Cryptosporidium
parvum GN=RNR1 PE=3 SV=2
Length = 803
Score = 998 bits (2580), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 484/821 (58%), Positives = 614/821 (74%), Gaps = 32/821 (3%)
Query: 1 MYVVKRDGRQEAVHFDKITARLKKLSYGLSTEHCDPVLVSQKVCAGVYKGVTTSQLDELA 60
MYVV R G +E V FD+I +R+ KLSYGL DP V+Q V G+Y G+ TS+LDELA
Sbjct: 1 MYVVNRKGEEEPVSFDQILSRITKLSYGLHP-LVDPARVTQAVINGLYSGIKTSELDELA 59
Query: 61 AETAAAMTTNHPDYASLAARIAVSNLHKNTKKSFSETIKDMYNHYNERSGLKAPLIADDI 120
++T A M H D++ LAARI+ SNLHKNT + +YN + + G APLI+ +
Sbjct: 60 SQTCAYMAATHNDFSKLAARISTSNLHKNTSSDIGDVASQLYN-FKDNQGCPAPLISKPV 118
Query: 121 YEIIMKNAACLDSEIIYDRDFDYDYFGFKTLERSYLLKVQGKVVERPQHMLMRVSIGIHK 180
Y+ IM+N ++S+I + +DF+YDYF FKTLERSYLLK+ KVVERPQH+LMRVS GIH
Sbjct: 119 YDFIMENRERINSKIDFSKDFEYDYFAFKTLERSYLLKIDNKVVERPQHLLMRVSCGIHC 178
Query: 181 DDIDSAIKTYHMMSQRWFTHASPTLFNAGTPRPQLSSCFLVCMKDDSIEGIYETLKECAV 240
DI++A++TY ++SQ++FTHA+PTLFN+GTPRPQ+SSCFL+ + +DSI GI++TL +CA
Sbjct: 179 GDIEAALETYELLSQKYFTHATPTLFNSGTPRPQMSSCFLLRIPEDSINGIFDTLTKCAN 238
Query: 241 ISKSAGGIGVSVHNIRATGSYIRGTNGTSNGIVPMLRVFNDTARYVDQGGGKRKGAFAVY 300
ISK+AGG+GV+V NIR TGSYIRGTNG SNG++PMLRV+NDTARY+DQGGGKRKGA A+Y
Sbjct: 239 ISKTAGGLGVAVSNIRGTGSYIRGTNGRSNGLIPMLRVYNDTARYIDQGGGKRKGAIAIY 298
Query: 301 LEPWHADIFEFLNLKKNHGKEEHRARDLFYALWVPDLFMERVQTNGQWSLFCPNEASGLA 360
LEPWH D+ EF+ ++KNHGKEE R RDLF ALWVPDLFMERV+ + W+L CP+E GL
Sbjct: 299 LEPWHVDVVEFIEIRKNHGKEEMRCRDLFPALWVPDLFMERVEKDQDWTLMCPDECRGLQ 358
Query: 361 DCWGAEFEKLYTHYEREGKAKKVVQAQNLWFEILTSQIETGTPYMLFKDTCNRKSNQQNL 420
D WG +F+KLY YE++G+ +K ++AQ LWF IL +QIETGTP++ +KD N KSNQ+NL
Sbjct: 359 DVWGDDFKKLYEEYEKQGRGRKTMKAQKLWFLILQAQIETGTPFICYKDAANSKSNQKNL 418
Query: 421 GTIKSSNLCTEIIEYTSPTETAVCNLASIALPRFVREKDVPVESHPSRIVGSRGSKNRFF 480
GTI SSNLCTEIIEYTS E AVCNLASI LP+FV + N+ F
Sbjct: 419 GTIVSSNLCTEIIEYTSTDEVAVCNLASIGLPKFVDK------------------NNKTF 460
Query: 481 DFEKLAEVTAIVTENLNKIIDVNYYPVETARRSNLRHRPIGIGVQGLADTFILLGMAFES 540
DF+KL EVT ++T NLNK+IDV YY ++ ++SNLRHRP+GIG+QGLAD F++L M +ES
Sbjct: 461 DFDKLKEVTKVITRNLNKLIDVGYYSLKECKKSNLRHRPLGIGIQGLADCFMMLRMPYES 520
Query: 541 PEAQQLNKDIFETIYYHALKTSSEIAAKEGPYETYHNSPVSKGILQPDMWNVIP-SDRWD 599
A++LNK IFE IYY AL S E+A K GPYETY SP SKGILQ DMW V P S D
Sbjct: 521 EGAKKLNKQIFEVIYYAALDASCELAEKYGPYETYSGSPASKGILQFDMWGVTPDSGLCD 580
Query: 600 WGVLRDMISKNGVRNSLLVAPMPTASTSQILGNNECFEPYTSNIYSRRVLSGEFVVVNKH 659
W +L+D ISK+G+RNSLL++PMPTASTSQILGNNE FEP+TSNIY RRVLSGEF VVN H
Sbjct: 581 WDLLKDRISKHGIRNSLLISPMPTASTSQILGNNESFEPFTSNIYHRRVLSGEFFVVNPH 640
Query: 660 LLHDLTEMGIWSPTIKNKIIYDDGSVQKIPEIPEELKMIYKTVWEIKQMTLVDMAVDRGC 719
LL+DL E+G+W +K II ++GS+Q I IPE+++ +YKTVWEIKQ T++DMA DRG
Sbjct: 641 LLNDLLELGLWDDRLKQNIIANNGSIQNILTIPEDIRELYKTVWEIKQKTVIDMAADRGP 700
Query: 720 YIDQSQSLNIHMDQPNFKKVTSLHFRTWSRGLKTGMYYLRSRAAADAIKFTVDTSVFK-E 778
Y+ QSQSLNIHM+ NF K++S+HF W +GLKTG+YYLR+++A I+FTVD + K E
Sbjct: 701 YVCQSQSLNIHMENANFAKLSSMHFYGWKKGLKTGIYYLRTQSATRPIQFTVDQQLLKSE 760
Query: 779 KPEKPELVVDDETKM---AQ--VVCSL-----TNREECMAC 809
EK L + + AQ + C L + EECM C
Sbjct: 761 TKEKDSLETNKRQALEPEAQKLIACPLRPTNMKDDEECMMC 801
>sp|O15909|RIR1_TRYBB Ribonucleoside-diphosphate reductase large subunit OS=Trypanosoma
brucei brucei GN=RNR1 PE=2 SV=1
Length = 838
Score = 956 bits (2471), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 466/800 (58%), Positives = 589/800 (73%), Gaps = 39/800 (4%)
Query: 3 VVKRDGRQEAVHFDKITARLKKLSYGLSTEHCDPVLVSQKVCAGVYKGVTTSQLDELAAE 62
V KRDG E + +R+ L G+ + + D + + V GV +G++TS LDEL AE
Sbjct: 8 VTKRDGSVEPYDEKVVRSRIVNLMSGIDSYYVDVDDLVRVVGEGVREGMSTSMLDELLAE 67
Query: 63 TAAAMTTNHPDYASLAARIAVSNLHKNTKKSFSETIKDMYNHYNERSGLKAPLIADDIYE 122
TAA T HPDY LA R+AV+ LHK T +S ++ + ++ H ++ + APLI++++++
Sbjct: 68 TAAYCVTKHPDYGLLAGRLAVTALHKTTTESVLDSFRVLHEHVSQATKRHAPLISEELWD 127
Query: 123 IIMKNAACLDSEIIYDRDFDYDYFGFKTLERSYLLKVQG-----KVVERPQHMLMRVSIG 177
I K++A L I Y+RDFD++YFG+KTLERSYLL+V +VVERPQ M +RV++G
Sbjct: 128 IANKHSAALQQIINYERDFDFEYFGYKTLERSYLLRVHKGRGVMEVVERPQQMFLRVALG 187
Query: 178 IHKDDIDSAIKTYHMMSQRWFTHASPTLFNAGTPRPQLSSCFLVCMKDDSIEGIYETLKE 237
IH +D++ +TY MSQ +FTHA+PTLFNAGTP PQ+SSCFLV M++DSI+GIY+TLK+
Sbjct: 188 IHGEDLERVKETYDYMSQGFFTHATPTLFNAGTPFPQMSSCFLVAMREDSIDGIYDTLKQ 247
Query: 238 CAVISKSAGGIGVSVHNIRATGSYIRGTNGTSNGIVPMLRVFNDTARYVDQGGGKRKGAF 297
CA+ISKSAGGIG+ +HNIRA GSYI GTNGTSNG+VPMLRV+N+TARYVDQGGGKRKGAF
Sbjct: 248 CAIISKSAGGIGIHMHNIRAAGSYIAGTNGTSNGLVPMLRVWNNTARYVDQGGGKRKGAF 307
Query: 298 AVYLEPWHADIFEFLNLKKNHGKEEHRARDLFYALWVPDLFMERVQTNGQWSLFCPNEAS 357
A+YLEPWHADIF FL LKKN GKE+ RARDLFY LW+PDLFMERV+++G W+L PN A
Sbjct: 308 AIYLEPWHADIFGFLLLKKNTGKEDQRARDLFYGLWIPDLFMERVESHGTWTLMDPNTAP 367
Query: 358 GLADCWGAEFEKLYTHYEREGKAKKVVQAQNLWFEILTSQIETGTPYMLFKDTCNRKSNQ 417
L+DC+G EF LY YEREG+ + +QAQ LWF IL SQ+ETG P+ML+KD CN KSNQ
Sbjct: 368 FLSDCYGQEFTDLYERYEREGRGVRTIQAQELWFLILESQVETGVPFMLYKDACNFKSNQ 427
Query: 418 QNLGTIKSSNLCTEIIEYTSPTETAVCNLASIALPRFVREKDVPVESHPSRIVGSRGSKN 477
+NLGTIK SNLCTEI+EYTS E AVCNLASIALPRFV K+
Sbjct: 428 KNLGTIKCSNLCTEIVEYTSRDEVAVCNLASIALPRFV--------------------KD 467
Query: 478 RFFDFEKLAEVTAIVTENLNKIIDVNYYPVETARRSNLRHRPIGIGVQGLADTFILLGMA 537
FD+ L EVT +VT NLN++ID N+YPV AR SNLRHRP+GIGVQGLAD F LL +
Sbjct: 468 GAFDYVALKEVTKVVTRNLNRVIDRNHYPVCEARYSNLRHRPVGIGVQGLADAFALLSLP 527
Query: 538 FESPEAQQLNKDIFETIYYHALKTSSEIAAKEGPYETYHNSPVSKGILQPDMWNVIPSDR 597
F PEA++LN+ IFETIY A++ S+E+A K+GPYET+ SP S+G LQ D+W+ R
Sbjct: 528 FAHPEAKKLNRQIFETIYIAAVEASTELAEKDGPYETFKGSPASEGKLQFDLWDEERRIR 587
Query: 598 -------------WDWGVLRDMISKNGVRNSLLVAPMPTASTSQILGNNECFEPYTSNIY 644
WDW L++ + K G+RNSLL+APMPTASTSQILGNNEC EP+TSNIY
Sbjct: 588 GMNEDSVHSHCGLWDWDSLKERVVKVGMRNSLLIAPMPTASTSQILGNNECIEPFTSNIY 647
Query: 645 SRRVLSGEFVVVNKHLLHDLTEMGIWSPTIKNKIIYDDGSVQKIPEIPEELKMIYKTVWE 704
RRVLSGEF VVNKHL+ +L + +W+ ++ KII +GSV I EIPE ++ +YK VWE
Sbjct: 648 VRRVLSGEFPVVNKHLVKELIRLRLWNDDMRRKIIALNGSVSGIKEIPERIRELYKVVWE 707
Query: 705 IKQMTLVDMAVDRGCYIDQSQSLNIHMDQPNFKKVTSLHFRTWSRGLKTGMYYLRSRAAA 764
I+Q L+DMA DRG YIDQSQSLN+ + P ++TS+HF +W +GLKTGMYYLRS+ AA
Sbjct: 708 IRQKDLIDMAADRGRYIDQSQSLNLFLATPTSSQLTSMHFYSWKKGLKTGMYYLRSQPAA 767
Query: 765 DAIKFTVDTSVFKEKPEKPE 784
DAIKFT+D KE P KP+
Sbjct: 768 DAIKFTLDPKAMKELP-KPD 786
>sp|Q8SR37|RIR1_ENCCU Ribonucleoside-diphosphate reductase large chain OS=Encephalitozoon
cuniculi (strain GB-M1) GN=ECU10_0920 PE=3 SV=1
Length = 768
Score = 811 bits (2096), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 382/764 (50%), Positives = 533/764 (69%), Gaps = 29/764 (3%)
Query: 9 RQEAVHFDKITARLKKLSYGLSTEHCDPVLVSQKVCAGVYKGVTTSQLDELAAETAAAMT 68
+ E + D I +R++ L H D + +++ +G + +T + + +ETAA+M
Sbjct: 11 KSEKLGIDLIRSRIEGYVKDLKLRHVDVDELVERIVSGWCEDMTRKETIDYCSETAASMI 70
Query: 69 TNHPDYASLAARIAVSNLHKNTKKSFSETIKDMYNHYNERSGLKAPLIADDIYEIIMKNA 128
T HP+Y +++RI VS +H+ T SF E IK + H ++++++Y II+++
Sbjct: 71 TKHPEYGQISSRIIVSYIHEITMDSFVEKIKYIQKHRG--------MVSEEMYGIILEHG 122
Query: 129 ACLDSEIIYDRDFDYDYFGFKTLERSYLLKVQGKVVERPQHMLMRVSIGIHKDDIDSAIK 188
++ I Y+ DF + YFG TL +SYL+KV +++ERPQ M MRV++ IHK D + +
Sbjct: 123 ETIEGMINYENDFLFSYFGILTLMKSYLIKVGEEIIERPQDMFMRVALQIHKTDFEKVRE 182
Query: 189 TYHMMSQRWFTHASPTLFNAGTPRPQLSSCFLVCMKDDSIEGIYETLKECAVISKSAGGI 248
Y+++S +FTHA+PTL+N+ PQL+SCFL+ ++DSIEG+Y + + A+I+K +GGI
Sbjct: 183 VYNLLSGHYFTHATPTLYNSCLKNPQLASCFLITPREDSIEGVYHMINQAAIITKYSGGI 242
Query: 249 GVSVHNIRATGSYIRGTNGTSNGIVPMLRVFNDTARYVDQGGGKRKGAFAVYLEPWHADI 308
G+++H IR+ GS +R T G SNGI+P+++V N T RY++QG +R G+ A++LEPWH +I
Sbjct: 243 GLNLHGIRSKGSSLRSTGGRSNGIIPLIQVLNATKRYINQGAERRPGSIAIFLEPWHMEI 302
Query: 309 FEFLNLKKNHGKEEHRARDLFYALWVPDLFMERVQTNGQWSLFCPNEASGLADCWGAEFE 368
F+FL L+KN G EE RARD+F ALW+ DLFMERV+ N +WSLFCP++A GL+D WG EF
Sbjct: 303 FDFLELRKNTGPEEFRARDIFTALWINDLFMERVKNNEEWSLFCPSQAVGLSDVWGEEFN 362
Query: 369 KLYTHYEREGKAKKVVQAQNLWFEILTSQIETGTPYMLFKDTCNRKSNQQNLGTIKSSNL 428
LY YE+ ++ VV AQ LW I+ +QIETGTPYM +KD CNR SNQQ+LGTIKSSNL
Sbjct: 363 ALYCKYEKT-ISRTVVPAQKLWKAIIEAQIETGTPYMCYKDACNRLSNQQHLGTIKSSNL 421
Query: 429 CTEIIEYTSPTETAVCNLASIALPRFVREKDVPVESHPSRIVGSRGSKNRFFDFEKLAEV 488
C EI+EY+S ET+VCNLASI LP FV K+ +FDFE V
Sbjct: 422 CAEIVEYSSGEETSVCNLASICLPMFV--------------------KDGWFDFEAFRRV 461
Query: 489 TAIVTENLNKIIDVNYYPVETARRSNLRHRPIGIGVQGLADTFILLGMAFESPEAQQLNK 548
I+T NLN++ID NYYPVE ARRSN+R+RPIGIGVQGLAD F +L +AFES A+ LN+
Sbjct: 462 VKILTVNLNRVIDFNYYPVEEARRSNMRNRPIGIGVQGLADLFAILRLAFESDGARSLNQ 521
Query: 549 DIFETIYYHALKTSSEIAAKEGPYETYHNSPVSKGILQPDMWNVIPSDRWDWGVLRDMIS 608
DIFE +YY A++ S E+A KEGP+ +Y SP+SKGI ++ S WDW LR+ I
Sbjct: 522 DIFEAMYYSAMEASCELAEKEGPFPSYEGSPISKGIFHFELAGRKASGNWDWEGLRERIR 581
Query: 609 KNGVRNSLLVAPMPTASTSQILGNNECFEPYTSNIYSRRVLSGEFVVVNKHLLHDLTEMG 668
++GVRNSLL+A MPTA TSQI GNNE FEP+ SNIY+RR +GEF +VN+HL++DL +G
Sbjct: 582 RHGVRNSLLIALMPTAGTSQIFGNNEAFEPHASNIYTRRTHAGEFQIVNQHLVNDLVRLG 641
Query: 669 IWSPTIKNKIIYDDGSVQKIPEIPEELKMIYKTVWEIKQMTLVDMAVDRGCYIDQSQSLN 728
+WS +KN +I ++GS+Q I IP E++ IYKT WEIK +++D+A DR ++DQSQSLN
Sbjct: 642 LWSYEMKNLVIENEGSIQNITSIPHEIREIYKTAWEIKMKSVIDLAADRQVFVDQSQSLN 701
Query: 729 IHMDQPNFKKVTSLHFRTWSRGLKTGMYYLRSRAAADAIKFTVD 772
I + +P + ++TS+HF + GLKTGMYYLR+R AIKFTVD
Sbjct: 702 IFIAKPTYSQLTSMHFYGYHCGLKTGMYYLRTRPITSAIKFTVD 745
>sp|Q7T6Y8|RIR1_MIMIV Ribonucleoside-diphosphate reductase large subunit OS=Acanthamoeba
polyphaga mimivirus GN=RNR1 PE=3 SV=2
Length = 881
Score = 749 bits (1934), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 378/826 (45%), Positives = 534/826 (64%), Gaps = 44/826 (5%)
Query: 7 DGRQEAVHFDKITARLKKLSYGLSTEHCDPVLVSQKVCAGVYKGVTTSQLDELAAETAAA 66
+G + + + I ++K+ + H D +++ + + T +D TA+
Sbjct: 75 NGSIQVITSEIIRTYVEKIFEKMEVTHLDIDKMTKNIFPKLKSINTIKDIDNQIISTASE 134
Query: 67 MTTNHPDYASLAARIAVSNLHKNTKKSFSETIKDMYNHYNERSGLKAPLIADDIYEIIMK 126
M T+H DY +A I ++NLH NT F ET + +YN+ +E S AP+I+++IY I K
Sbjct: 135 MVTDHYDYPKIAVWILMTNLHDNTSDDFLETAEKLYNNKSE-SNKNAPIISENIYNFIKK 193
Query: 127 NAACLDSEIIYDRDFDYDYFGFKTLERSYLLKVQGKVVERPQHMLMRVSIGIH--KDDID 184
+ ++ I YDRD++ FGF+TLE+SYL ++ K+VERPQH+ MRV+I +H K+D+D
Sbjct: 194 HIKEINRVIRYDRDYNLTIFGFRTLEKSYLKRINKKIVERPQHLFMRVAITLHYRKNDLD 253
Query: 185 SAIKTYHMMSQRWFTHASPTLFNAGTPRPQLSSCFLVCMKDDSIEGIYETLKECAVISKS 244
+TY +S+ +FTHA+PTLFNAGT QLSSCFL+ + DS+E I E KECA+ISK
Sbjct: 254 RIFETYKYLSKGYFTHATPTLFNAGTTHEQLSSCFLLGI-GDSLEEISECWKECALISKH 312
Query: 245 AGGIGVSVHNIRATGSYIRGTNGTSNGIVPMLRVFNDTARYVDQGGGKRKGAFAVYLEPW 304
AGGIG+ + NIR G+YI T G + G+ +L +FND +RY +QGG KR G+FA+++EPW
Sbjct: 313 AGGIGIHMTNIRVEGAYIASTQGEAGGL-RVLTIFNDISRYANQGG-KRPGSFAIFIEPW 370
Query: 305 HADIFEFLNLKKNHGKEEHRARDLFYALWVPDLFMERVQTNGQWSLFCPNEASGLADCWG 364
H DIF FL+LKKN G E RARDLF L + D+FMERV + WSL CP++ L + +G
Sbjct: 371 HGDIFFFLDLKKNTGAETERARDLFLGLMINDIFMERVYKDDVWSLMCPSQCPNLLNKYG 430
Query: 365 AEFEKLYTHYEREGKAKKVVQAQNLWFEILTSQIETGTPYMLFKDTCNRKSNQQNLGTIK 424
EF K Y YE EG K ++A +LWF+I+ SQIETG PY++FKD N KSNQ N+G +
Sbjct: 431 DEFTKEYLKYESEGIYLKQIRAIDLWFKIMESQIETGVPYVMFKDAINDKSNQINIGVVN 490
Query: 425 SSNLCTEIIEYTSPTETAVCNLASIALPRFVREKD-VPVESHPSRIVGSRGSKNRFFDFE 483
SNLC EI+E + +VCNL+SI LPRFV+ D VP F+++
Sbjct: 491 GSNLCCEIVEVSDKNNFSVCNLSSICLPRFVKIIDEVPT-----------------FNYQ 533
Query: 484 KLAEVTAIVTENLNKIIDVNYYPVETARRSNLRHRPIGIGVQGLADTFILLGMAFESPEA 543
KL +++ I+T NLN IID+N+YP++ R +NLR RPIGIGVQGLAD F + F+S A
Sbjct: 534 KLFKISRILTRNLNNIIDINFYPLDKTRITNLRDRPIGIGVQGLADVFAMFKTPFDSEIA 593
Query: 544 QQLNKDIFETIYYHALKTSSEIAAKEGPYETYHNSPVSKGILQPDMWNVIPSD---RWDW 600
+ LN+ IFETIYY AL S+++A + G Y+TY SP+S+G Q D+WN S WDW
Sbjct: 594 RDLNRKIFETIYYGALTESNKLAREFGTYQTYQGSPISQGKFQFDLWNFDKSQLSGMWDW 653
Query: 601 GVLRDMISKNGVRNSLLVAPMPTASTSQILGNNECFEPYTSNIYSRRVLSGEFVVVNKHL 660
+LR I +GVRNSL+ MPTASTSQI+G NEC EPYT NIYSR ++GE+ V+NKHL
Sbjct: 654 ELLRQEILNHGVRNSLVTTCMPTASTSQIMGWNECIEPYTENIYSRSTMAGEYFVINKHL 713
Query: 661 LHDLTEMGIWSPTIKNKIIYDDGSVQKIPEIPEELKMIYKTVWEIKQMTLVDMAVDRGCY 720
+ DL E+G+W+ + + I Y GSV IP IP+ +K IY+TVWEI Q ++++MA DR +
Sbjct: 714 IKDLIELGVWNSEMVDLIKYYKGSVANIPNIPDNIKAIYRTVWEIPQKSIIEMAADRAPF 773
Query: 721 IDQSQSLNIHMDQPNFKKVTSLHFRTWSRGLKTGMYYLRSRAAADAIKFTVDTSVFKEKP 780
+DQ+QS+N+++D+P+F ++ S F W +GLKTGMYYLRS+ A+ A +F +D KE
Sbjct: 774 VDQTQSMNLYIDKPSFARLNSCLFYAWRKGLKTGMYYLRSKPASSANQFGIDIDKIKEIE 833
Query: 781 EKPELVVDDET------------KMAQVVCS-----LTNREECMAC 809
K + ++T +++ +VC L EC++C
Sbjct: 834 SKNGIKKQEDTFDLTDLTNTINQQVSGMVCRFVPAHLRKPGECLSC 879
>sp|P0C8H9|RIR1_ASFWA Ribonucleoside-diphosphate reductase large subunit OS=African swine
fever virus (isolate Warthog/Namibia/Wart80/1980)
GN=War-055 PE=3 SV=1
Length = 778
Score = 505 bits (1300), Expect = e-142, Method: Compositional matrix adjust.
Identities = 304/760 (40%), Positives = 435/760 (57%), Gaps = 86/760 (11%)
Query: 65 AAMTTNHPDYASLAARIAVSNLHKNTKKSFSETIKDMYNHYNERSGLKAPLIADDIYEII 124
+A+T H DY++LAAR++V LH++T SFS+ ++ ++ ++ +++
Sbjct: 42 SALTILHYDYSTLAARLSVYQLHQSTASSFSKAVR-------LQAAQSCSRLSPQFVDVV 94
Query: 125 MKNAACLDSEIIYDRDFDYDYFGFKTLERSYLLKVQ-GKVVERPQHMLMRVSIGIHKD-- 181
K A DS I Y+RD+ G +T++ SYLLK + G ++ERPQ MRV+I I+
Sbjct: 95 YKYKAIFDSYIDYNRDYKLSLLGIETMKNSYLLKNKDGVIMERPQDAYMRVAIMIYGMGK 154
Query: 182 --DIDSAIKTYHMMSQRWFTHASPTLFNAGTPRPQLSSCFLVCMKDDSIEGIYETLKECA 239
+I + TY ++SQ THASPT+FNAGT +PQLSSCFL+ + +D++E +Y+ +K
Sbjct: 155 VVNIKMILLTYDLLSQHIITHASPTMFNAGTKKPQLSSCFLLNV-NDNLENLYDMVKTAG 213
Query: 240 VISKSAGGIGVSVHNIRATGSYIRGTNGTSNGIVPMLRVFNDTARYVDQGGGKRKGAFAV 299
+IS GGIG+ + IRA S+I G+ SNGI + + N + Y +QGG R GA+AV
Sbjct: 214 IISGGGGGIGLCLSGIRAKNSFISGSGLRSNGIQNYIMLQNASQCYANQGG-LRPGAYAV 272
Query: 300 YLEPWHADIFEFLNLKKNHGK-EEHR--ARDLFYALWVPDLFMERVQT------NGQWSL 350
YLE WH DIF FL + + G+ E R A +L Y LWVPDLFME ++ +G+W L
Sbjct: 273 YLELWHQDIFTFLEMPRLKGQMAEQRLNAPNLKYGLWVPDLFMEILEDQIHNRGDGRWYL 332
Query: 351 FCPNEASGLADCWGAE----------FEKLYTHYEREGKAKKVVQAQNL---WFEILTSQ 397
F P++A L + E F+KLY Y E + V A+ + WF+ +
Sbjct: 333 FSPDQAPNLHKVFDLERSQHENAHREFKKLYYQYVAEKRYTGVTTAKEIIKAWFKTV--- 389
Query: 398 IETGTPYMLFKDTCNRKSNQQNLGTIKSSNLCTEIIEYTSP------TETAVCNLASIAL 451
I+ G PY+ FKD NRKSN ++GTI +SNLC IE T P E VCNLA++ L
Sbjct: 390 IQVGNPYIGFKDAINRKSNLSHVGTITNSNLC---IEVTIPCWEGDKAEQGVCNLAAVNL 446
Query: 452 PRFVREKDVPVESHPSRIVGSRGSKNRFFDFEKLAEVTAIVTENLNKIIDVNYYPVETAR 511
F+RE +D+ L E + VTENL+ IID YYP E R
Sbjct: 447 AAFIRENG--------------------YDYRGLIEASGNVTENLDNIIDNGYYPTEATR 486
Query: 512 RSNLRHRPIGIGVQGLADTFILLGMAFESPEAQQLNKDIFETIYYHALKTSSEIAAKEGP 571
RSN+RHRPIGIGV GLAD F L + F SPEA +++ I +YY A++ S E+A ++G
Sbjct: 487 RSNMRHRPIGIGVFGLADVFASLKIKFGSPEAIAMDEAIHAALYYGAMRRSIELAKEKGS 546
Query: 572 YETYHNSPVSKGILQPDMW----NVIPS-------------DRWDWGVLRDMISKNGVRN 614
+ ++ S SKG+LQPD+W ++IPS R W LR + + GVRN
Sbjct: 547 HPSFPGSAASKGLLQPDLWVRCGDLIPSWEERVAQTTQGVLTRKSWRQLR-LAAIQGVRN 605
Query: 615 SLLVAPMPTASTSQILGNNECFEPYTSNIYSRRVLSGEFVVVNKHLLHDLTEMGIWSPTI 674
L A MPTA++S G NECFEP+TSN+Y+RR LSGEF+V+NK+L+ DL E+ +W+ I
Sbjct: 606 GYLTALMPTATSSNSTGKNECFEPFTSNLYTRRTLSGEFIVLNKYLIDDLKEINLWTEAI 665
Query: 675 KNKIIYDDGSVQKIPEIPEELKMIYKTVWEIKQMTLVDMAVDRGCYIDQSQSLNIHMDQP 734
+ +++ GS+Q I +IP E++ YKT E+ Q L A R ++ QS SLN + +P
Sbjct: 666 QLQLLNAGGSIQHILDIPAEIRDRYKTSREMNQKILTKHAAARNPFVSQSMSLNYYFYEP 725
Query: 735 NFKKVTSLHFRTWSRGLKTGMYYLRSRAAADAIKFTVDTS 774
+V ++ W +GL TG YY A K + S
Sbjct: 726 ELSQVLTVLVLGWKKGLTTGSYYCHFSPGAGTQKKIIRNS 765
>sp|P26685|RIR1_ASFM2 Ribonucleoside-diphosphate reductase large subunit OS=African swine
fever virus (isolate Tick/Malawi/Lil 20-1/1983)
GN=Mal-053 PE=3 SV=1
Length = 779
Score = 504 bits (1297), Expect = e-141, Method: Compositional matrix adjust.
Identities = 302/759 (39%), Positives = 431/759 (56%), Gaps = 84/759 (11%)
Query: 65 AAMTTNHPDYASLAARIAVSNLHKNTKKSFSETIKDMYNHYNERSGLKAPLIADDIYEII 124
+A+T H DY++LAAR++V LH++T SFS+ + + ++ ++ +++
Sbjct: 43 SALTILHYDYSTLAARLSVYLLHQSTASSFSKAV-------SLQAAQSCSRLSSHFVDVV 95
Query: 125 MKNAACLDSEIIYDRDFDYDYFGFKTLERSYLLKVQ-GKVVERPQHMLMRVSIGIHKD-- 181
K A DS I Y RD+ G +T++ SYLLK + G ++ERPQ MRV+I IH
Sbjct: 96 YKYKAIFDSYIDYSRDYKLSLLGIETMKNSYLLKNKDGVIMERPQDAYMRVAIMIHGMGR 155
Query: 182 --DIDSAIKTYHMMSQRWFTHASPTLFNAGTPRPQLSSCFLVCMKDDSIEGIYETLKECA 239
++ + TY ++S+ THASPT+FNAGT +PQLSSCFL+ + +D++E +Y+ +K
Sbjct: 156 VVNMKMILLTYDLLSRHVITHASPTMFNAGTKKPQLSSCFLLNV-NDNLENLYDMVKTAG 214
Query: 240 VISKSAGGIGVSVHNIRATGSYIRGTNGTSNGIVPMLRVFNDTARYVDQGGGKRKGAFAV 299
+IS GGIG+ + IRA S+I G+ SNGI + + N + Y +QGG R GA+AV
Sbjct: 215 IISGGGGGIGLCLSGIRAKNSFISGSGLRSNGIQNYIVLQNASQCYANQGG-LRPGAYAV 273
Query: 300 YLEPWHADIFEFLNLKKNHGK-EEHR--ARDLFYALWVPDLFMERVQT------NGQWSL 350
YLE WH DIF FL + + G+ E R A +L Y LWVPDLFME ++ +G W L
Sbjct: 274 YLELWHQDIFTFLQMPRLKGQMAEQRLNAPNLKYGLWVPDLFMEILEDQIHNRGDGTWYL 333
Query: 351 FCPNEASGLADCWGAE----------FEKLYTHYEREGKAKKVVQAQNLWFEILTSQIET 400
F P++A L + E F+KLY Y E + V A+ + E + ++
Sbjct: 334 FSPDQAPNLHKVFDLERSQHENAHREFKKLYYQYVAEKRYTGVTTAKEIIKEWFKTVVQV 393
Query: 401 GTPYMLFKDTCNRKSNQQNLGTIKSSNLCTEIIEYTSP------TETAVCNLASIALPRF 454
G PY+ FKD NRKSN ++GTI +SNLC EI T P E VCNLA++ L F
Sbjct: 394 GNPYIGFKDAINRKSNLSHVGTITNSNLCIEI---TIPCWEGNEAEQGVCNLAAVNLAAF 450
Query: 455 VREKDVPVESHPSRIVGSRGSKNRFFDFEKLAEVTAIVTENLNKIIDVNYYPVETARRSN 514
+RE +D+ L E VTENL+ IID YYP E RRSN
Sbjct: 451 IRESS--------------------YDYRGLIEAAGNVTENLDNIIDNGYYPTEATRRSN 490
Query: 515 LRHRPIGIGVQGLADTFILLGMAFESPEAQQLNKDIFETIYYHALKTSSEIAAKEGPYET 574
+RHRPIGIGV GLAD F L M F SPEA +++ I +YY A++ S E+A ++G + +
Sbjct: 491 MRHRPIGIGVFGLADVFASLKMKFGSPEAIAIDEAIHAALYYGAMRRSIELAKEKGSHPS 550
Query: 575 YHNSPVSKGILQPDMW----NVIPSDRWD---------------WGVLRDMISKNGVRNS 615
+ S SKG+LQPD+W ++IPS W+ W LR + + GVRN
Sbjct: 551 FPGSAASKGLLQPDLWVRCGDLIPS--WENRVAQTTQGVLTPKKWWQLR-LAAIQGVRNG 607
Query: 616 LLVAPMPTASTSQILGNNECFEPYTSNIYSRRVLSGEFVVVNKHLLHDLTEMGIWSPTIK 675
L A MPTA++S G NECFEP+TSN+Y+RR LSGEF+++NK+L+ DL E+ +WS I+
Sbjct: 608 YLTALMPTATSSNSTGKNECFEPFTSNLYTRRTLSGEFIILNKYLMDDLEEINLWSEDIQ 667
Query: 676 NKIIYDDGSVQKIPEIPEELKMIYKTVWEIKQMTLVDMAVDRGCYIDQSQSLNIHMDQPN 735
+++ GS+Q I +IP E++ YKT E+ Q L A R ++ QS SLN + +P
Sbjct: 668 QQLLNAGGSIQHILDIPAEIRERYKTSREMNQKILTKHAAARNPFVSQSMSLNYYFYEPE 727
Query: 736 FKKVTSLHFRTWSRGLKTGMYYLRSRAAADAIKFTVDTS 774
+V ++ W +GL TG YY A K + S
Sbjct: 728 LSQVLTVLVLGWKKGLTTGSYYCHFSPGAGTQKKIIRNS 766
>sp|P0C8H8|RIR1_ASFP4 Ribonucleoside-diphosphate reductase large subunit OS=African swine
fever virus (isolate Tick/South Africa/Pretoriuskop
Pr4/1996) GN=Pret-057 PE=3 SV=1
Length = 778
Score = 503 bits (1294), Expect = e-141, Method: Compositional matrix adjust.
Identities = 303/760 (39%), Positives = 434/760 (57%), Gaps = 86/760 (11%)
Query: 65 AAMTTNHPDYASLAARIAVSNLHKNTKKSFSETIKDMYNHYNERSGLKAPLIADDIYEII 124
+A+T H DY++LAAR++V LH++T SFS+ ++ ++ ++ +++
Sbjct: 42 SALTILHYDYSTLAARLSVYQLHQSTASSFSKAVR-------LQAAQSCSRLSPQFVDVV 94
Query: 125 MKNAACLDSEIIYDRDFDYDYFGFKTLERSYLLKVQ-GKVVERPQHMLMRVSIGIHKD-- 181
K A DS I Y RD+ G +T++ SYLLK + G ++ERPQ MRV+I I+
Sbjct: 95 YKYKAIFDSYIDYSRDYKLSLLGIETMKNSYLLKNKDGVIMERPQDAYMRVAIMIYGMGK 154
Query: 182 --DIDSAIKTYHMMSQRWFTHASPTLFNAGTPRPQLSSCFLVCMKDDSIEGIYETLKECA 239
+I + TY ++S+ THASPT+FNAGT +PQLSSCFL+ + +D++E +Y+ +K
Sbjct: 155 VVNIKMILLTYDLLSRHIITHASPTMFNAGTKKPQLSSCFLLNV-NDNLENLYDMVKTAG 213
Query: 240 VISKSAGGIGVSVHNIRATGSYIRGTNGTSNGIVPMLRVFNDTARYVDQGGGKRKGAFAV 299
+IS GGIG+ + IRA S+I G+ SNGI + + N + Y +QGG R GA+AV
Sbjct: 214 IISGGGGGIGLCLSGIRAKNSFISGSGLRSNGIQNYIMLQNASQCYANQGG-LRPGAYAV 272
Query: 300 YLEPWHADIFEFLNLKKNHGK-EEHR--ARDLFYALWVPDLFMERVQT------NGQWSL 350
YLE WH DIF FL + + G+ E R A +L Y LWVPDLFME ++ +G+W L
Sbjct: 273 YLELWHQDIFTFLEMPRLKGQMAEQRLNAPNLKYGLWVPDLFMEILEDQIHNRGDGRWYL 332
Query: 351 FCPNEASGLADCWGAE----------FEKLYTHYEREGKAKKVVQAQNL---WFEILTSQ 397
F P++A L + E F+KLY Y E + V A+ + WF+ +
Sbjct: 333 FSPDQAPNLHKVFDLERSQHENAHREFKKLYYQYVAEKRYTGVTTAKEIIKAWFKTV--- 389
Query: 398 IETGTPYMLFKDTCNRKSNQQNLGTIKSSNLCTEIIEYTSP------TETAVCNLASIAL 451
I+ G PY+ FKD NRKSN ++GTI +SNLC IE T P E VCNLA++ L
Sbjct: 390 IQVGNPYIGFKDAINRKSNLSHVGTITNSNLC---IEVTIPCWEGDKAEQGVCNLAAVNL 446
Query: 452 PRFVREKDVPVESHPSRIVGSRGSKNRFFDFEKLAEVTAIVTENLNKIIDVNYYPVETAR 511
F+RE +D+ L E + VTENL+ IID YYP E R
Sbjct: 447 AAFIRENG--------------------YDYRGLIEASGNVTENLDNIIDNGYYPTEATR 486
Query: 512 RSNLRHRPIGIGVQGLADTFILLGMAFESPEAQQLNKDIFETIYYHALKTSSEIAAKEGP 571
RSN+RHRPIGIGV GLAD F L + F SPEA +++ I +YY A++ S E+A ++G
Sbjct: 487 RSNMRHRPIGIGVFGLADVFASLKIKFGSPEAIAMDEAIHAALYYGAMRRSIELAKEKGS 546
Query: 572 YETYHNSPVSKGILQPDMW----NVIPS-------------DRWDWGVLRDMISKNGVRN 614
+ ++ S SKG+LQPD+W ++IPS R W LR + + GVRN
Sbjct: 547 HPSFPGSAASKGLLQPDLWVRCGDLIPSWEERVAQTTQGVLTRKSWRQLR-LAAIQGVRN 605
Query: 615 SLLVAPMPTASTSQILGNNECFEPYTSNIYSRRVLSGEFVVVNKHLLHDLTEMGIWSPTI 674
L A MPTA++S G NECFEP+TSN+Y+RR LSGEF+V+NK+L+ DL E+ +W+ I
Sbjct: 606 GYLTALMPTATSSNSTGKNECFEPFTSNLYTRRTLSGEFIVLNKYLIDDLKEINLWTEAI 665
Query: 675 KNKIIYDDGSVQKIPEIPEELKMIYKTVWEIKQMTLVDMAVDRGCYIDQSQSLNIHMDQP 734
+ +++ GS+Q I +IP E++ YKT E+ Q L A R ++ QS SLN + +P
Sbjct: 666 QLQLLNAGGSIQHILDIPAEIRDRYKTSREMNQKILTKHAAARNPFVSQSMSLNYYFYEP 725
Query: 735 NFKKVTSLHFRTWSRGLKTGMYYLRSRAAADAIKFTVDTS 774
+V ++ W +GL TG YY A K + S
Sbjct: 726 ELSQVLTVLVLGWKKGLTTGSYYCHFSPGAGTQKKIIRNS 765
>sp|P42491|RIR1_ASFB7 Ribonucleoside-diphosphate reductase large subunit OS=African swine
fever virus (strain Badajoz 1971 Vero-adapted)
GN=Ba71V-045 PE=3 SV=1
Length = 778
Score = 502 bits (1293), Expect = e-141, Method: Compositional matrix adjust.
Identities = 301/757 (39%), Positives = 429/757 (56%), Gaps = 80/757 (10%)
Query: 65 AAMTTNHPDYASLAARIAVSNLHKNTKKSFSETIKDMYNHYNERSGLKAPLIADDIYEII 124
+A+T H DY++LAAR++V LH++T SFS+ ++ ++ ++ +++
Sbjct: 42 SALTILHYDYSTLAARLSVYQLHQSTASSFSKAVR-------LQAAQSCSRLSPQFVDVV 94
Query: 125 MKNAACLDSEIIYDRDFDYDYFGFKTLERSYLLKVQ-GKVVERPQHMLMRVSIGIHKD-- 181
K A DS I Y+RD+ G +T++ SYLLK + G ++ERPQ MRV+I I+
Sbjct: 95 YKYKAIFDSYIDYNRDYKLSLLGIETMKNSYLLKNKDGVIMERPQDAYMRVAIMIYGMGK 154
Query: 182 --DIDSAIKTYHMMSQRWFTHASPTLFNAGTPRPQLSSCFLVCMKDDSIEGIYETLKECA 239
+I + TY ++S+ THASPT+FNAGT +PQLSSCFL+ + +D++E +Y+ +K
Sbjct: 155 VVNIKMILLTYDLLSRHVITHASPTMFNAGTKKPQLSSCFLLNV-NDNLENLYDMVKTAG 213
Query: 240 VISKSAGGIGVSVHNIRATGSYIRGTNGTSNGIVPMLRVFNDTARYVDQGGGKRKGAFAV 299
+IS GGIG+ + IRA S+I G+ SNGI + + N + Y +QGG R GA+AV
Sbjct: 214 IISGGGGGIGLCLSGIRAKNSFISGSGLRSNGIQNYIMLQNASQCYANQGG-LRPGAYAV 272
Query: 300 YLEPWHADIFEFLNLKKNHGK-EEHR--ARDLFYALWVPDLFMERVQT------NGQWSL 350
YLE WH DIF FL + + G+ E R A +L Y LWVPDLFME ++ +G W L
Sbjct: 273 YLELWHQDIFTFLQMPRLKGQMAEQRLNAPNLKYGLWVPDLFMEILEDQIHNRGDGTWYL 332
Query: 351 FCPNEASGLADCWGAE----------FEKLYTHYEREGKAKKVVQAQNLWFEILTSQIET 400
F P++A L + E F+KLY Y E + V A+ + E + I+
Sbjct: 333 FSPDQAPNLHKVFDLERSQHENAHREFKKLYYQYVAEKRYTGVTTAKEIIKEWFKTVIQV 392
Query: 401 GTPYMLFKDTCNRKSNQQNLGTIKSSNLCTEIIEYTSP------TETAVCNLASIALPRF 454
G PY+ FKD NRKSN ++GTI +SNLC IE T P E VCNLA++ L F
Sbjct: 393 GNPYIGFKDAINRKSNLSHVGTITNSNLC---IEVTIPCWEGDKAEQGVCNLAAVNLAAF 449
Query: 455 VREKDVPVESHPSRIVGSRGSKNRFFDFEKLAEVTAIVTENLNKIIDVNYYPVETARRSN 514
+RE +D+ L E + VTENL+ IID YYP E RRSN
Sbjct: 450 IRENG--------------------YDYRGLIEASGNVTENLDNIIDNGYYPTEATRRSN 489
Query: 515 LRHRPIGIGVQGLADTFILLGMAFESPEAQQLNKDIFETIYYHALKTSSEIAAKEGPYET 574
+RHRPIGIGV GLAD F L M F SPEA +++ I +YY A++ S E+A ++G + +
Sbjct: 490 MRHRPIGIGVFGLADVFASLKMKFGSPEAIAMDEAIHAALYYGAMRRSIELAKEKGSHPS 549
Query: 575 YHNSPVSKGILQPDMWNVIP--SDRWD---------------WGVLRDMISKNGVRNSLL 617
+ S SKG+LQPD+W S W+ W LR + + GVRN L
Sbjct: 550 FPGSAASKGLLQPDLWVRCGDLSSSWEERVAQTTQGVLTRKSWWQLR-LAAMQGVRNGYL 608
Query: 618 VAPMPTASTSQILGNNECFEPYTSNIYSRRVLSGEFVVVNKHLLHDLTEMGIWSPTIKNK 677
A MPTA++S G NECFEP+TSN+Y+RR LSGEF+V+NK+L+ DL E+ +W+ I+ +
Sbjct: 609 TALMPTATSSNSTGKNECFEPFTSNLYTRRTLSGEFIVLNKYLIDDLKEIDLWTEAIQQQ 668
Query: 678 IIYDDGSVQKIPEIPEELKMIYKTVWEIKQMTLVDMAVDRGCYIDQSQSLNIHMDQPNFK 737
++ GS+Q I +IP E++ YKT E+ Q L A R ++ QS SLN + +P
Sbjct: 669 LLNAGGSIQHILDIPAEIRDRYKTSREMNQKILTKHAAARNPFVSQSMSLNYYFYEPELS 728
Query: 738 KVTSLHFRTWSRGLKTGMYYLRSRAAADAIKFTVDTS 774
+V ++ W +GL TG YY A K + S
Sbjct: 729 QVLTVLVLGWKKGLTTGSYYCHFSPGAGTQKKIIRNS 765
>sp|O84834|RIR1_CHLTR Ribonucleoside-diphosphate reductase subunit alpha OS=Chlamydia
trachomatis (strain D/UW-3/Cx) GN=nrdA PE=3 SV=2
Length = 1047
Score = 499 bits (1284), Expect = e-140, Method: Compositional matrix adjust.
Identities = 301/841 (35%), Positives = 455/841 (54%), Gaps = 67/841 (7%)
Query: 3 VVKRDGRQEAVHFDKITARLKKLSYGLSTEHCDPVLVSQKVCAGVYKGVTTSQLDELAAE 62
V+ +DG + ++ A L + E D L++ A Y G+ S++
Sbjct: 239 VLSKDGSTYTMTHSQLLAHLARACSRFP-ETTDAALLTDMAFANFYSGIKESEVVLACIM 297
Query: 63 TAAAMTTNHPDYASLAARIAVSNLHKNT--KKSFSETIKDMYNHYNERSGLKAPLIADDI 120
A A PDYA +AA + + ++K K ++E ++ + R K + D
Sbjct: 298 AARANIEKEPDYAFVAAELLLDVVYKEALGKSKYAEDLEQAH-----RDHFKRYIAEGDT 352
Query: 121 YEIIMKNAACLDSEIIYD-----RDFDYDYFGFKTLERSYLLKVQGKVVERPQHMLMRVS 175
Y + + D + + D RD + Y G + L Y +G +E PQ MRV+
Sbjct: 353 YRLNAELKHLFDLDALADAMDLSRDLQFSYMGIQNLYDRYFNHHEGCRLETPQIFWMRVA 412
Query: 176 IGI---HKDDIDSAIKTYHMMSQRWFTHASPTLFNAGTPRPQLSSCFLVCMKDDSIEGIY 232
+G+ +D AI Y+++S +T A+PTLFN+G QLSSC+L ++D+ + IY
Sbjct: 413 MGLALNEQDKTSWAITFYNLLSTFRYTPATPTLFNSGMRHSQLSSCYLSTVQDNLV-NIY 471
Query: 233 ETLKECAVISKSAGGIGVSVHNIRATGSYIRGTNGTSNGIVPMLRVFNDTARYVDQGGGK 292
+ + + A++SK AGGIG IRATG+ I+GTNG S G++P ++V NDTA V+QGG K
Sbjct: 472 KVIADNAMLSKWAGGIGNDWTAIRATGALIKGTNGRSQGVIPFIKVTNDTAVAVNQGG-K 530
Query: 293 RKGAFAVYLEPWHADIFEFLNLKKNHGKEEHRARDLFYALWVPDLFMERVQTNGQWSLFC 352
RKGA VYLE WH D +FL L+KN G E RA D+ A W+PDLF +R+Q G W+LF
Sbjct: 531 RKGAVCVYLEVWHLDYEDFLELRKNTGDERRRAHDVNIASWIPDLFFKRLQQKGTWTLFS 590
Query: 353 PNEASGLADCWGAEFEKLYTHYER-----EGKAKKVVQAQNLWFEILTSQIETGTPYMLF 407
P++ GL D +G EFE+LY YER E + K V+A++LW ++L+ ETG P+M F
Sbjct: 591 PDDVPGLHDAYGEEFERLYEEYERKVDTGEIRLFKKVEAEDLWRKMLSMLFETGHPWMTF 650
Query: 408 KDTCNRKSNQQNLGTIKSSNLCTEIIEYTSPTETAVCNLASIALPRFVREKDVPVESHPS 467
KD N +S Q + G ++ SNLCTEI+ S TETAVCNL SI L +
Sbjct: 651 KDPSNIRSAQDHKGVVRCSNLCTEILLNCSETETAVCNLGSINLVQ-------------- 696
Query: 468 RIVGSRGSKNRFFDFEKLAEVTAIVTENLNKIIDVNYYPVETARRSNLRHRPIGIGVQGL 527
IVG D EKL+E +I L+ +ID+N+YP + A+ +N HR IG+GV G
Sbjct: 697 HIVGDG------LDEEKLSETISIAVRMLDNVIDINFYPTKEAKEANFAHRAIGLGVMGF 750
Query: 528 ADTFILLGMAFESPEAQQLNKDIFETIYYHALKTSSEIAAKEGPYETYHNSPVSKGILQP 587
D L +++ S EA + E I Y+A++ S +A + G Y +Y S +G+L
Sbjct: 751 QDALYKLDISYASQEAVEFADYSSELISYYAIQASCLLAKERGTYSSYKGSKWDRGLLPI 810
Query: 588 DMWNVIP------------SDRWDWGVLRDMISKNGVRNSLLVAPMPTASTSQILGNNEC 635
D ++ S R DW +R ++ ++G+R+ L+A PTA+ S I+G +
Sbjct: 811 DTIQLLANYRGEANLQMDTSSRKDWEPIRSLVKEHGMRHCQLMAIAPTATISNIIGVTQS 870
Query: 636 FEPYTSNIYSRRVLSGEFVVVNKHLLHDLTEMGIWSPTIKNKIIYDDGSVQKIPEIPEEL 695
EP +++ + LSGEF + N +L+ L ++GIW + + + Y DGS+ +I IP+ L
Sbjct: 871 IEPTYKHLFVKSNLSGEFTIPNVYLIEKLKKLGIWDADMLDDLKYFDGSLLEIERIPDHL 930
Query: 696 KMIYKTVWEIKQMTLVDMAVDRGCYIDQSQSLNIHMDQPNFKKVTSLHFRTWSRGLKTGM 755
K I+ T +EI+ +++ A R +ID QSLN+++ QP+ KK+++++ W +GLKT
Sbjct: 931 KHIFLTAFEIEPEWIIECASRRQKWIDMGQSLNLYLAQPDGKKLSNMYLTAWKKGLKT-T 989
Query: 756 YYLRSRAAADAIKFTVDTSV-------FKEKPEKPELVVDDETKMAQVVCSLTNREECMA 808
YYLRS +A K VD + K K ++V+ K VCSL E C A
Sbjct: 990 YYLRSSSATTVEKSFVDINKRGIQPRWMKNKSASAGIIVERAKKAP--VCSL--EEGCEA 1045
Query: 809 C 809
C
Sbjct: 1046 C 1046
>sp|P0C8H7|RIR1_ASFK5 Ribonucleoside-diphosphate reductase large subunit OS=African swine
fever virus (isolate Pig/Kenya/KEN-50/1950) GN=Ken-057
PE=3 SV=1
Length = 779
Score = 499 bits (1284), Expect = e-140, Method: Compositional matrix adjust.
Identities = 298/753 (39%), Positives = 423/753 (56%), Gaps = 72/753 (9%)
Query: 65 AAMTTNHPDYASLAARIAVSNLHKNTKKSFSETIKDMYNHYNERSGLKAPLIADDIYEII 124
+A+T H DY++LAAR++V LH++T SFSE + + ++ ++ +++
Sbjct: 43 SALTILHYDYSTLAARLSVYLLHQSTASSFSEAV-------SLQAAQSCSRLSPQFVDVV 95
Query: 125 MKNAACLDSEIIYDRDFDYDYFGFKTLERSYLLKVQ-GKVVERPQHMLMRVSIGIHKD-- 181
K A DS I Y RD+ G +T++ SYLLK + G ++ERPQ MRV+I I+
Sbjct: 96 YKYKAIFDSYIDYSRDYKLTLLGIETMKNSYLLKNKDGVIMERPQDAYMRVAIMIYGMGR 155
Query: 182 --DIDSAIKTYHMMSQRWFTHASPTLFNAGTPRPQLSSCFLVCMKDDSIEGIYETLKECA 239
++ + TY ++S+ THASPT+FNAGT +PQLSSCFL+ + +D++E +Y+ +K
Sbjct: 156 VVNMKMILLTYDLLSRHVITHASPTMFNAGTKKPQLSSCFLLNV-NDNLENLYDMVKTAG 214
Query: 240 VISKSAGGIGVSVHNIRATGSYIRGTNGTSNGIVPMLRVFNDTARYVDQGGGKRKGAFAV 299
+IS GGIG+ + IRA S+I G+ SNGI + + N + Y +QGG R GA+AV
Sbjct: 215 IISGGGGGIGLCLSGIRAKNSFISGSGLRSNGIQNYIVLQNASQCYANQGG-LRPGAYAV 273
Query: 300 YLEPWHADIFEFLNLKKNHGK-EEHR--ARDLFYALWVPDLFMERVQT------NGQWSL 350
YLE WH DIF FL + + G+ E R A +L Y LWVPDLFME ++ +G W L
Sbjct: 274 YLELWHQDIFTFLQMPRLKGQMAEQRLNAPNLKYGLWVPDLFMEILEDQIHDRGDGTWYL 333
Query: 351 FCPNEASGLADCWGAE----------FEKLYTHYEREGKAKKVVQAQNLWFEILTSQIET 400
F P++A L + E F KLY Y E + V A+ + E + I+
Sbjct: 334 FSPDQAPNLHKVFDLERSRHKNAHREFRKLYYQYVAEKRYTGVTTAKEIIKEWFKTVIQV 393
Query: 401 GTPYMLFKDTCNRKSNQQNLGTIKSSNLCTEII---EYTSPTETAVCNLASIALPRFVRE 457
G PY+ FKD NRKSN ++GTI +SNLC EI S E VCNLA++ L F+RE
Sbjct: 394 GNPYIGFKDAINRKSNLSHVGTITNSNLCIEITIPCWEGSEAEQGVCNLAAVNLAAFIRE 453
Query: 458 KDVPVESHPSRIVGSRGSKNRFFDFEKLAEVTAIVTENLNKIIDVNYYPVETARRSNLRH 517
+D+ L E VTENL+ IID YYP E RRSN+RH
Sbjct: 454 NS--------------------YDYRGLIEAAGNVTENLDNIIDNGYYPTEATRRSNMRH 493
Query: 518 RPIGIGVQGLADTFILLGMAFESPEAQQLNKDIFETIYYHALKTSSEIAAKEGPYETYHN 577
RPIGIGV GLAD F M F SPEA +++ I +YY A++ S E+A ++G + ++
Sbjct: 494 RPIGIGVFGLADVFASFKMKFGSPEAIAMDEAIHAALYYGAMRRSVELAKEKGSHPSFPG 553
Query: 578 SPVSKGILQPDMWNVIPSDRWDW---------GVLRD-------MISKNGVRNSLLVAPM 621
S SKG+LQPD+W + W GVL + + GVRN L A M
Sbjct: 554 SAASKGLLQPDLWVRCDDLVFSWEERVAQTTQGVLTPKKWWQLRLAAMQGVRNGYLTALM 613
Query: 622 PTASTSQILGNNECFEPYTSNIYSRRVLSGEFVVVNKHLLHDLTEMGIWSPTIKNKIIYD 681
PTA++S G NECFEP+TSN+Y+RR LSGEF+V+NK+L+ DL E+ +W+ I+ +++
Sbjct: 614 PTATSSNSTGKNECFEPFTSNLYTRRTLSGEFIVLNKYLIDDLKEINLWTEAIQQQLLNA 673
Query: 682 DGSVQKIPEIPEELKMIYKTVWEIKQMTLVDMAVDRGCYIDQSQSLNIHMDQPNFKKVTS 741
GS+Q I +IP E++ YKT E+ Q L A R ++ QS SLN + +P +V +
Sbjct: 674 GGSIQHILDIPAEIRERYKTSREMNQKILTKHAAARNPFVSQSMSLNYYFYEPELSQVLT 733
Query: 742 LHFRTWSRGLKTGMYYLRSRAAADAIKFTVDTS 774
+ W +GL TG YY A K + S
Sbjct: 734 VLVLGWKKGLTTGSYYCHFSPGAGTQKKIIRNS 766
>sp|Q9PL93|RIR1_CHLMU Ribonucleoside-diphosphate reductase subunit alpha OS=Chlamydia
muridarum (strain MoPn / Nigg) GN=nrdA PE=3 SV=1
Length = 1047
Score = 498 bits (1283), Expect = e-140, Method: Compositional matrix adjust.
Identities = 299/841 (35%), Positives = 458/841 (54%), Gaps = 67/841 (7%)
Query: 3 VVKRDGRQEAVHFDKITARLKKLSYGLSTEHCDPVLVSQKVCAGVYKGVTTSQLDELAAE 62
V+ +DG + ++ ARL + E D L++ + Y G+ S++
Sbjct: 239 VLSKDGSTYMITHSQLLARLARACSRFP-ETTDAALLTDMAFSNFYSGIKESEVVLACIM 297
Query: 63 TAAAMTTNHPDYASLAARIAVSNLHKNT--KKSFSETIKDMYNHYNERSGLKAPLIADDI 120
A A PDYA +AA + + ++K + E ++ +Y R K ++ D
Sbjct: 298 AARANIEKEPDYAFVAAELLLDVVYKEALDRSRGDEDLEQVY-----RDHFKRYIMEGDS 352
Query: 121 YEI--IMKNAACLDS---EIIYDRDFDYDYFGFKTLERSYLLKVQGKVVERPQHMLMRVS 175
Y + +KN LD+ + RD + Y G + L Y G+ +E PQ MRV+
Sbjct: 353 YRLNPELKNLFDLDALANAMDLSRDLQFSYMGIQNLYDRYFNHDDGRRLETPQIFWMRVA 412
Query: 176 IGIHKDDIDS---AIKTYHMMSQRWFTHASPTLFNAGTPRPQLSSCFLVCMKDDSIEGIY 232
+G+ + D AI Y+++S +T A+PTLFN+G QLSSC+L ++DD + IY
Sbjct: 413 MGLALKEQDKTYWAITFYNLLSTFRYTPATPTLFNSGMRHSQLSSCYLSTVQDDLV-NIY 471
Query: 233 ETLKECAVISKSAGGIGVSVHNIRATGSYIRGTNGTSNGIVPMLRVFNDTARYVDQGGGK 292
+ + + A++SK AGGIG IRATG+ I+GTNG S G++P ++V NDTA V+QGG K
Sbjct: 472 KVISDNAMLSKWAGGIGNDWTAIRATGALIKGTNGKSQGVIPFIKVTNDTAVAVNQGG-K 530
Query: 293 RKGAFAVYLEPWHADIFEFLNLKKNHGKEEHRARDLFYALWVPDLFMERVQTNGQWSLFC 352
RKGA VYLE WH D +FL L+KN G + RA D+ A W+PDLF +R+Q G W+LF
Sbjct: 531 RKGAVCVYLEVWHLDYEDFLELRKNTGDDRRRAHDVNTASWIPDLFFKRLQQKGSWTLFS 590
Query: 353 PNEASGLADCWGAEFEKLYTHYER-----EGKAKKVVQAQNLWFEILTSQIETGTPYMLF 407
P++ GL D +G EFE+LY YER E + K V+A++LW ++L+ ETG P+M F
Sbjct: 591 PDDVPGLHDAYGEEFERLYEEYERKVDSGEIRLYKKVEAEDLWRKMLSMLFETGHPWMTF 650
Query: 408 KDTCNRKSNQQNLGTIKSSNLCTEIIEYTSPTETAVCNLASIALPRFVREKDVPVESHPS 467
KD N +S Q + G ++ SNLCTEI+ S TETAVCNL S+ L + + + +
Sbjct: 651 KDPSNIRSAQDHTGVVRCSNLCTEILLNCSETETAVCNLGSVNLVQHILDDGL------- 703
Query: 468 RIVGSRGSKNRFFDFEKLAEVTAIVTENLNKIIDVNYYPVETARRSNLRHRPIGIGVQGL 527
D EKL+E +I L+ +ID+N+YP + A+ +N HR IG+GV G
Sbjct: 704 -------------DEEKLSETISIAVRMLDNVIDINFYPTKEAKEANFAHRAIGLGVMGF 750
Query: 528 ADTFILLGMAFESPEAQQLNKDIFETIYYHALKTSSEIAAKEGPYETYHNSPVSKGILQP 587
D L +++ S EA + E I Y+A++ S +A + G Y +Y S +G+L
Sbjct: 751 QDALYKLDISYASQEAVEFADYSSELISYYAIQASCLLAKERGTYSSYKGSKWDRGLLPI 810
Query: 588 DMWNVIP------------SDRWDWGVLRDMISKNGVRNSLLVAPMPTASTSQILGNNEC 635
D ++ S R DW +R +I ++G+RN L+A PTA+ S I+G +
Sbjct: 811 DTIQLLANYRGKDNLQMDTSVRKDWEPIRSLIREHGMRNCQLMAIAPTATISNIIGVTQS 870
Query: 636 FEPYTSNIYSRRVLSGEFVVVNKHLLHDLTEMGIWSPTIKNKIIYDDGSVQKIPEIPEEL 695
EP +++ + LSGEF + N +L+ L ++GIW + + + Y DGS+ +I +P+ +
Sbjct: 871 IEPTYKHLFVKSNLSGEFTIPNVYLIEKLKKLGIWDADMLDDLKYFDGSLLEIERVPDHI 930
Query: 696 KMIYKTVWEIKQMTLVDMAVDRGCYIDQSQSLNIHMDQPNFKKVTSLHFRTWSRGLKTGM 755
K I+ T +EI+ +++ A R +ID QSLN+++ QP+ KK+++++ W +GLKT
Sbjct: 931 KHIFLTAFEIEPEWILECASRRQKWIDMGQSLNLYLAQPDGKKLSNMYLTAWKKGLKT-T 989
Query: 756 YYLRSRAAADAIKFTVDTSV-------FKEKPEKPELVVDDETKMAQVVCSLTNREECMA 808
YYLRS +A K VD + K K +VV+ +K VCSL E C
Sbjct: 990 YYLRSSSATTVEKSFVDINKRGIQPRWMKNKSASAGIVVERASKTP--VCSL--EEGCEV 1045
Query: 809 C 809
C
Sbjct: 1046 C 1046
>sp|Q9Z6S5|RIR1_CHLPN Ribonucleoside-diphosphate reductase subunit alpha OS=Chlamydia
pneumoniae GN=nrdA PE=3 SV=1
Length = 1044
Score = 487 bits (1254), Expect = e-136, Method: Compositional matrix adjust.
Identities = 291/811 (35%), Positives = 442/811 (54%), Gaps = 71/811 (8%)
Query: 35 DPVLVSQKVCAGVYKGVTTSQLDELAAETAAAMTTNHPDYASLAARIAVSNLHKNT---- 90
D L++ +Y G+ ++ A A PDYA +AA + S+L++ T
Sbjct: 268 DSQLLADMAFMNLYSGIKEDEVTTACIMAARANIEREPDYAFIAAELLTSSLYEETLGCS 327
Query: 91 --KKSFSETIKDMYNHY--NERSGLKAPLIADDIYEIIMKNAACLDSEIIYDRDFDYDYF 146
+ SE K + Y N P + D Y++ L + RD + Y
Sbjct: 328 SQDPNLSEIHKKHFKEYILNGEEYRLNPQLKD--YDL-----DALSEVLDLSRDQQFSYM 380
Query: 147 GFKTLERSYLLKVQGKVVERPQHMLMRVSIGIHKDDIDS----AIKTYHMMSQRWFTHAS 202
G + L Y +G+ +E Q MRVS+G+ ++ + AI Y+++S +T A+
Sbjct: 381 GVQNLYDRYFNLHEGRRLETAQIFWMRVSMGLALNEGEQKNFWAITFYNLLSTFRYTPAT 440
Query: 203 PTLFNAGTPRPQLSSCFLVCMKDDSIEGIYETLKECAVISKSAGGIGVSVHNIRATGSYI 262
PTLFN+G QLSSC+L +KDD + IY+ + + A++SK AGGIG ++RATG+ I
Sbjct: 441 PTLFNSGMRHSQLSSCYLSTVKDD-LSHIYKVISDNALLSKWAGGIGNDWTDVRATGAVI 499
Query: 263 RGTNGTSNGIVPMLRVFNDTARYVDQGGGKRKGAFAVYLEPWHADIFEFLNLKKNHGKEE 322
+GTNG S G++P ++V NDTA V+QGG KRKGA VYLE WH D +FL L+KN G E
Sbjct: 500 KGTNGKSQGVIPFIKVANDTAIAVNQGG-KRKGAMCVYLENWHLDYEDFLELRKNTGDER 558
Query: 323 HRARDLFYALWVPDLFMERVQTNGQWSLFCPNEASGLADCWGAEFEKLYTHYER-----E 377
R D+ A W+PDLF +R++ G W+LF P++ GL + +G EFEKLY YER E
Sbjct: 559 RRTHDINTASWIPDLFFKRLEKKGMWTLFSPDDVPGLHEAYGLEFEKLYEEYERKVESGE 618
Query: 378 GKAKKVVQAQNLWFEILTSQIETGTPYMLFKDTCNRKSNQQNLGTIKSSNLCTEIIEYTS 437
+ K V+A+ LW ++L+ ETG P++ FKD N +SNQ ++G ++ SNLCTEI+ S
Sbjct: 619 IRLYKKVEAEVLWRKMLSMLYETGHPWITFKDPSNIRSNQDHVGVVRCSNLCTEILLNCS 678
Query: 438 PTETAVCNLASIALPRFVREKDVPVESHPSRIVGSRGSKNRFFDFEKLAEVTAIVTENLN 497
+ETAVCNL SI L +R N D EKL E +I L+
Sbjct: 679 ESETAVCNLGSINLVEHIR--------------------NDKLDEEKLKETISIAIRILD 718
Query: 498 KIIDVNYYPVETARRSNLRHRPIGIGVQGLADTFILLGMAFESPEAQQLNKDIFETIYYH 557
+ID+N+YP A+++NL HR +G+GV G D L +++ S EA + + + E I Y+
Sbjct: 719 NVIDLNFYPTPEAKQANLTHRAVGLGVMGFQDVLYELNISYASQEAVEFSDECSEIIAYY 778
Query: 558 ALKTSSEIAAKEGPYETYHNSPVSKGILQPDMWNVIP------------SDRWDWGVLRD 605
A+ SS +A + G Y +Y S +G L D ++ S + DW +RD
Sbjct: 779 AILASSLLAKERGTYASYSGSKWDRGYLPLDTIELLKETRGEHNVLVDTSSKKDWTPVRD 838
Query: 606 MISKNGVRNSLLVAPMPTASTSQILGNNECFEPYTSNIYSRRVLSGEFVVVNKHLLHDLT 665
I K G+RNS ++A PTA+ S I+G + EP +++ + LSGEF + N +L+ L
Sbjct: 839 TIQKYGMRNSQVMAIAPTATISNIIGVTQSIEPMYKHLFVKSNLSGEFTIPNTYLIKKLK 898
Query: 666 EMGIWSPTIKNKIIYDDGSVQKIPEIPEELKMIYKTVWEIKQMTLVDMAVDRGCYIDQSQ 725
E+G+W + + + Y DGS+ +I IP LK ++ T +EI+ +++ R +ID
Sbjct: 899 ELGLWDAEMLDDLKYFDGSLLEIERIPNHLKKLFLTAFEIEPEWIIECTSRRQKWIDMGV 958
Query: 726 SLNIHMDQPNFKKVTSLHFRTWSRGLKTGMYYLRSRAAADAIKFTVDTSV-------FKE 778
SLN+++ +P+ KK+++++ W +GLKT YYLRS+AA K +D + K
Sbjct: 959 SLNLYLAEPDGKKLSNMYLTAWKKGLKT-TYYLRSQAATSVEKSFIDINKRGIQPRWMKN 1017
Query: 779 KPEKPELVVDDETKMAQVVCSLTNREECMAC 809
K +VV+ +T VCS+ E C +C
Sbjct: 1018 KSASTSIVVERKT---TPVCSM--EEGCESC 1043
>sp|Q6R7H4|RIR1_OSHVF Ribonucleoside-diphosphate reductase large subunit OS=Ostreid
herpesvirus 1 (isolate France) PE=3 SV=1
Length = 835
Score = 422 bits (1086), Expect = e-117, Method: Compositional matrix adjust.
Identities = 266/771 (34%), Positives = 408/771 (52%), Gaps = 77/771 (9%)
Query: 67 MTTNHPDYASLAARIAVSNLHKNTKKSFSETIKDMYNHYNERSGLKAPL------IADDI 120
+ +HPDYA LA R++ NT K+F++ + + E +G ++P+ ++D+I
Sbjct: 77 LIPSHPDYAFLAGRVSAYMTQINTPKTFTDAVYGIQMAVGETNGFRSPMKPVKGGLSDEI 136
Query: 121 YEIIMKNAACLDSEIIYDRDFDYDYFGFKTLERSYLLKVQGKVVERPQHMLMRVSIGIHK 180
+ + ++ A LD I RD+ ++Y G L +KV K+ ERPQ++ MRV++ +
Sbjct: 137 VDFVNEHGARLDGMIDDVRDYSHNYMGITGLLNGVAIKVNKKLYERPQYVFMRVAMAMTD 196
Query: 181 DDIDSAI----KTYHMMSQRWFTHASPTLFNAGTPRPQLSSCFLVCMKDDSIEGIYETLK 236
++A+ +TY ++S + + ASP LFN GT +SCFL+ M D+ + + +
Sbjct: 197 LSSETALEDIWQTYMLISGQCLSMASPVLFNGGTSSSNTASCFLLDMGDNMVSITKKVAQ 256
Query: 237 ECAVISKSAGGIGVSVHNIRATGSYIRGTNGTSNGIVPMLRVFNDTARYVDQGGGKRKGA 296
+I+K+ GGIG++ +RATGS I G G S+GI L +F+ A+ VDQG KR GA
Sbjct: 257 TMTLIAKN-GGIGINFSKLRATGSKI-GMAGKSSGIGGKLNLFDRVAQSVDQGENKRPGA 314
Query: 297 FAVYLEPWHADIFEFLNLK-KNHGKEEHRARDLFYALWVPDLFMERVQTNGQWSLFCPNE 355
A YL WHAD++++L + G E ++ L L + DLFMERV+ + +WSLF PN+
Sbjct: 315 IAGYLTDWHADMYDWLYSRYSGSGNEVNKRHVLNMGLVMSDLFMERVENDKEWSLFSPND 374
Query: 356 ASGLADCWGAEFEKLYTHYEREGKAKKV-VQAQNLWFEILTSQIETGTPYMLFKDTCNRK 414
GL + +G +F + Y +E K K+ V A+ L+ +I TG PY+LFKD N +
Sbjct: 375 VVGLEELYGEKFVRAYRAHEANPKIKRTTVSARKLFSDIANMMWSTGEPYILFKDAVNER 434
Query: 415 SNQQNLGTIKSSNLCTEIIEYTSPTETAVCNLASIALPRFVREKDVPVESHPSRIVGSRG 474
SN ++LGTIK+SNLC EI++Y E AVCNLA+I + FV VE+
Sbjct: 435 SNHKHLGTIKNSNLCCEIVQYCDTNEIAVCNLATICVSNFVN-----VETGE-------- 481
Query: 475 SKNRFFDFEKLAEVTAIVTENLNKIIDVNYYPV--ETARR-------------------- 512
DFE +A+ + + +N +ID Y + E R
Sbjct: 482 -----IDFEGIADAAGVACKGINNLIDKQNYDLGNEQLMRLADERTEEVVEVNGIKFDAK 536
Query: 513 ------SNLRHRPIGIGVQGLADTFILLGMAFESPEAQQLNKDIFETIYYHALKTSSEIA 566
SNL+HRP GIG+QGL D F+ L + ++S A +L I E IYY A++ S +IA
Sbjct: 537 YNLVSYSNLKHRPQGIGMQGLHDVFMKLKIPYDSEMAFRLAALIQEAIYYGAVRESVKIA 596
Query: 567 AKEGPYETYH--NSPVSKGILQPDMWNVIPSDR------WDWGVLRDMISKNGVRNSLLV 618
++GPY +Y+ N+ +G LQ D DR ++W + K G+ NS++
Sbjct: 597 EEKGPYPSYYWDNNTHREGKLQFDFLEGFDRDRDLTHELFNWREVLKKFEKFGINNSVVT 656
Query: 619 APMPTASTSQILGNNECFEPYTSNIYSRRVLSGEFVVVNKHLLHDLTEMGIWSPTIKNKI 678
A P+AS+SQ+ N E E TSN +++ + G+F+++NKHL DL ++G+W + I
Sbjct: 657 AQPPSASSSQLNDNVESIEAITSNRFTKGIKDGKFIIINKHLQKDLEDLGMWDAQMVGDI 716
Query: 679 IYDDGSVQKIPEIPEELKMIYKTVWEIKQMTLVDMAVDRGCYIDQSQSLNIHMDQPNFKK 738
+DGS+Q I IP+ ++ IYKT EI +V + +IDQ+ S N+ + + N
Sbjct: 717 EANDGSIQNIERIPKNIREIYKTAREIDHKAVVKICAAIQPFIDQTISKNMFVPK-NVDN 775
Query: 739 VTSLHFRTWSRG----LKTGMYYLRSRAAADAIKFT----VDTSVFKEKPE 781
L G LKTGMYY R A F D + K PE
Sbjct: 776 PVQLIMENVILGHKMKLKTGMYYTRGIPAMKQQNFGKMNFQDKDIGKPVPE 826
>sp|O66503|RIR1_AQUAE Ribonucleoside-diphosphate reductase subunit alpha OS=Aquifex
aeolicus (strain VF5) GN=nrdA PE=3 SV=1
Length = 801
Score = 377 bits (968), Expect = e-103, Method: Compositional matrix adjust.
Identities = 267/837 (31%), Positives = 417/837 (49%), Gaps = 119/837 (14%)
Query: 1 MYVVKRDGRQEAVHFDKITARLKKLSYGLSTEHCDPVLVSQKVCAGVYKGVTTSQLDELA 60
MYV+KR GR+E + +KI +K GL + DP+ + G+TT ++ +L
Sbjct: 3 MYVIKRSGRKEKLDINKIRIAIKFACEGL---NVDPLELEADAQIQFRDGITTKEIQQLL 59
Query: 61 AETAA-AMTTNHPDYASLAARIAVSNLHKNTKKSFSETIKD---MYNHYNERS--GLKAP 114
+TAA ++ PD+ AAR+ + +L+K+ +++D Y YN ++
Sbjct: 60 IKTAAEKVSAERPDWTYTAARLLLYDLYKDVAHLRGYSLRDDLGKYKPYNRKNFYSFVKE 119
Query: 115 LIADDIY-EIIMKNAA-----CLDSEIIYDRDFDYDYFGFKTLERSYLLK-VQGKVVERP 167
+ IY E +++N + L + I +RD + Y G K L YL++ +G+V+E P
Sbjct: 120 YVEKGIYGEYLLENYSEEDFNKLANYIKPERDLYFTYTGIKILYDRYLVRDEEGRVIELP 179
Query: 168 QHMLMRVSIGIH-----KDDIDSAIKTYHMMSQRWFTHASPTLFNAGTPRPQLSSCFLVC 222
Q M M +++ + ++ + A K Y ++S+ T A+PTL NA P QLSSCF++
Sbjct: 180 QEMYMLIAMTLAVPEKPEERLKWAKKFYDVLSEHKVTVATPTLMNARRPFTQLSSCFVLT 239
Query: 223 MKDDSIEGIYETLKECAVISKSAGGIGVSVHNIRATGSYIRGTNGTSNGIVPMLRVFNDT 282
+ DD + I++ +K+ +ISK AGG+GV + IRATG+ IR G S+G++P++++ NDT
Sbjct: 240 VDDDLFD-IFDNVKKAGMISKFAGGLGVYLGKIRATGAPIRKFKGASSGVIPVVKLINDT 298
Query: 283 ARYVDQGGGKRKGAFAVYLEPWHADIFEFLNLKKNHGKEEHRARDLFYALWVPDLFMERV 342
YVDQ G RKG+ ++ L+ WH DI +FL +K N G E +A D+ A+ +PDLFM+R+
Sbjct: 299 MTYVDQ-LGMRKGSASITLDIWHKDILDFLEVKTNVGDERKKAHDIHPAVSIPDLFMKRL 357
Query: 343 QTNGQWSLFCPN---------------------------------------EASGLADCW 363
+ W+L P E GL D +
Sbjct: 358 KNREDWTLIDPYWARQYITRKIYDGKYKEVKPLPGSHYYVGIKEDGTQDILEPKGLEDFY 417
Query: 364 GAEFEKLYTHYERE--GKAKKVVQAQNLWFEILTSQIETGTPYMLFKDTCNRKSNQQNLG 421
G EFEK Y E AKK V + LW +LT ETG PY+ F+D NRK+ ++ G
Sbjct: 418 GEEFEKWYLELEENLPSYAKKKVNSFELWKRLLTVAFETGEPYIFFRDEANRKNPNKHTG 477
Query: 422 TIKSSNLCTEIIEYTSPT--ETAVCNLASIALPRFVREKDVPVESHPSRIVGSRGSKNRF 479
+ SSNLC EI++ SP+ E V + + + D+PV + S +G ++
Sbjct: 478 MVYSSNLCHEIVQTMSPSKHEKPVLDPETGEITYKKEAGDLPVCNLGSVNLGKVHTE--- 534
Query: 480 FDFEKLAEVTAIVTENLNKIIDVNYYPVETARRSNLRHRPIGIGVQGLADTFILLGMAFE 539
E++ EV ++ L+ +I++N+Y + A +N R+R IGIGV + G+ +E
Sbjct: 535 ---EEIKEVLPLLVRMLDNVIEMNFYAIPEAEYTNKRYRAIGIGVSNYHYCLVKNGIKWE 591
Query: 540 SPEAQQLNKDIFETIYYHALKTSSEIAAKEGPYETYHNSPVSKGILQPDMWNVIP----- 594
S E + +FE I ++ALK S E+A + G Y+ + S SKGIL I
Sbjct: 592 SEEHLKFADKLFELIAFYALKGSLELAKERGRYKLFDGSNWSKGILFGRSVEEIEENSRQ 651
Query: 595 -SDRWDWGVLRDMISKNGVRNSLLVAPMPTASTSQILGNNECFEPYTSNIYSRRVLSGEF 653
+ W L + I K G+RN+ L+A MPT STS ILG +P + Y +SG
Sbjct: 652 NGNNLPWRELAEEIKKYGIRNAYLLALMPTGSTSLILGATPSIDPIFARFYKEENMSG-- 709
Query: 654 VVVNKHLLHDLTEMGIWSPTIKNKIIYDDGSVQKIPEIPEELKMI---YKTVWEIKQMTL 710
+P++P E+ YKT + I
Sbjct: 710 ---------------------------------ILPQVPPEVDRFYWHYKTAYTIDHEWT 736
Query: 711 VDMAVDRGCYIDQSQSLNIHMDQPNFK--KVTSLHFRTWSRGLKTGMYYLRSRAAAD 765
+ A R +IDQ+QSLN+ +D N +++ L+ W GLKT +YYLRSR+A D
Sbjct: 737 IRAAAVRQKWIDQAQSLNLFVDPQNIDGPRLSRLYELAWELGLKT-IYYLRSRSAMD 792
>sp|P55982|RIR1_HELPY Ribonucleoside-diphosphate reductase subunit alpha OS=Helicobacter
pylori (strain ATCC 700392 / 26695) GN=nrdA PE=3 SV=1
Length = 788
Score = 375 bits (963), Expect = e-103, Method: Compositional matrix adjust.
Identities = 261/826 (31%), Positives = 410/826 (49%), Gaps = 100/826 (12%)
Query: 3 VVKRDGRQEAVHFDKITARLKKLSYGLSTEHCDPVLVSQKVCAGVYKGVTTSQLDELAAE 62
VVKR+GR E + KI K + L + V ++ +TT ++ + +
Sbjct: 4 VVKRNGRIEPLDITKIQKYTKDATDNLEGVSQSELEVDARL--QFRDKITTEEIQQTLIK 61
Query: 63 TAA-AMTTNHPDYASLAARIAVSNL-HKNTKKSFSETIKDMYNHYNERS----GLKAPLI 116
TA + + P+++ +A+R+ + +L HK + + +K+ + + E+ G K
Sbjct: 62 TAVDKIDIDTPNWSFVASRLFLYDLYHKVSGFTGYRHLKEYFENAEEKGRILKGFKEKF- 120
Query: 117 ADDIYEIIMKNAACLDSEIIYDRDFDYDYFGFKTLERSYLLK-VQGKVVERPQHMLMRVS 175
+ L+S+I +RDF ++Y G KTL YLLK +E PQHM M ++
Sbjct: 121 ----------DLEFLNSQIKPERDFQFNYLGIKTLYDRYLLKDANNNPIELPQHMFMSIA 170
Query: 176 IGIHKDDIDS---AIKTYHMMSQRWFTHASPTLFNAGTPRPQLSSCFLVCMKDDSIEGIY 232
+ + +++ + A++ Y ++S+ A+PTL NA T + QLSSC++ D+ IEGI+
Sbjct: 171 MFLAQNEQEPNKIALEFYEVLSKFEAMCATPTLANARTTKHQLSSCYIGSTPDN-IEGIF 229
Query: 233 ETLKECAVISKSAGGIGVSVHNIRATGSYIRGTNGTSNGIVPMLRVFNDTARYVDQGGGK 292
++ KE A++SK GGIG +R+ GSYI G S G +P L++ ND A VDQ G
Sbjct: 230 DSYKEMALLSKYGGGIGWDFSLVRSIGSYIDGHKNASAGTIPFLKIANDVAIAVDQLG-T 288
Query: 293 RKGAFAVYLEPWHADIFEFLNLKKNHGKEEHRARDLFYALWVPDLFMERVQTNGQWSLFC 352
RKGA AVYLE WH D+ EF++L+KN G E RA DLF ALWV DLF++RV + W+LF
Sbjct: 289 RKGAIAVYLEIWHIDVMEFIDLRKNSGDERRRAHDLFPALWVCDLFLKRVLEDAMWTLFD 348
Query: 353 PNEASGLADCWGAEFEKLYTHYEREGK-AKKVVQAQNLWFEILTSQIETGTPYMLFKDTC 411
P E L + +G +FEK Y YE++ K K+ + A++LW +IL + E G P++ FKD
Sbjct: 349 PYECKDLTELYGQDFEKRYLEYEKDPKIIKEYINAKDLWKKILMNYFEAGLPFLAFKDNA 408
Query: 412 NRKSNQQNLGTIKSSNLCTEIIEYTSPTETAVCNLASIALPRFVREKD-VPVESHPSRIV 470
NR + + G I+SSNLCTEI + T+P + + F EK+ V +S+ ++
Sbjct: 409 NRCNPNAHAGIIRSSNLCTEIFQNTAPNHYYMQIEYTDGTIEFFEEKELVTTDSNITKCA 468
Query: 471 GSRGSKN------------------------------RFFDFEKLAEVTAIVTENLNKII 500
S + + E + V I+ L+ +I
Sbjct: 469 NKLTSTDILKGKPIYIATKVAKDGQTAVCNLASINLSKINTEEDIKRVVPIMVRLLDNVI 528
Query: 501 DVNYYPVETARRSNLRHRPIGIGVQGLADTFILLGMAFESPEAQQLNKDIFETIYYHALK 560
D+N+YP + +NL++R IG+GV G A +A+ S E + + E I YHA+
Sbjct: 529 DLNFYPNRKVKATNLQNRAIGLGVMGEAQMLAEHQIAWGSKEHLEKIDALMEQISYHAID 588
Query: 561 TSSEIAAKEGPYETYHNSPVSKGILQPDMWNV---------IPSDRWDWGVLRDMISKNG 611
TS+ +A ++G Y+ + NS SKGI D N + + DW LR+ + NG
Sbjct: 589 TSANLAKEKGVYKDFENSEWSKGIFPIDKANNEALKLTEKGLFNHACDWQGLREKVKANG 648
Query: 612 VRNSLLVAPMPTASTSQILGNNECFEPYTSNIYSRRVLSGEFVVVNKHLLHDLTEMGIWS 671
+RN L+A PT+S S ++G + EP + LSG VV
Sbjct: 649 MRNGYLMAIAPTSSISILVGTTQTIEPIYKKKWFEENLSGLIPVV--------------- 693
Query: 672 PTIKNKIIYDDGSVQKIPEIPEELKMIYKTVWEIKQMTLVDMAVDRGCYIDQSQSLNIHM 731
+P + E Y + ++I L+ A R +IDQ QSLN+ +
Sbjct: 694 ----------------VPNLNVETWNFYTSAYDIDAKDLIKAAAVRQKWIDQGQSLNVFL 737
Query: 732 --DQPNFKKVTSLHFRTWSRGLKTGMYYLRSRAAADAIKFTVDTSV 775
+ + K + ++ W GLK+ YYLRS + + K +D SV
Sbjct: 738 RIENASGKTLHDIYTLAWKLGLKS-TYYLRSESPSIDEKSVLDRSV 782
>sp|Q9ZLF9|RIR1_HELPJ Ribonucleoside-diphosphate reductase subunit alpha OS=Helicobacter
pylori (strain J99) GN=nrdA PE=3 SV=1
Length = 788
Score = 375 bits (962), Expect = e-102, Method: Compositional matrix adjust.
Identities = 262/826 (31%), Positives = 412/826 (49%), Gaps = 100/826 (12%)
Query: 3 VVKRDGRQEAVHFDKITARLKKLSYGLSTEHCDPVLVSQKVCAGVYKGVTTSQLDELAAE 62
VVKR+GR E + KI K + L + V ++ +TT ++ + +
Sbjct: 4 VVKRNGRIEPLDITKIQKYTKDATDNLEGVSQSELEVDARL--QFRDKITTEEIQQTLIK 61
Query: 63 TAA-AMTTNHPDYASLAARIAVSNL-HKNTKKSFSETIKDMYNHYNERS----GLKAPLI 116
TA + + P+++ +A+R+ + +L HK + + +K+ + + E+ G K
Sbjct: 62 TAVDKIDIDTPNWSFVASRLFLYDLYHKVSGFTGYRHLKEYFENAEEKGRILKGFKEKF- 120
Query: 117 ADDIYEIIMKNAACLDSEIIYDRDFDYDYFGFKTLERSYLLK-VQGKVVERPQHMLMRVS 175
+ L+S+I +RDF ++Y G KTL YLLK +E PQHM M ++
Sbjct: 121 ----------DLEFLNSQIKPERDFQFNYLGIKTLYDRYLLKDANNHPIELPQHMFMSIA 170
Query: 176 IGIHKDDIDS---AIKTYHMMSQRWFTHASPTLFNAGTPRPQLSSCFLVCMKDDSIEGIY 232
+ + +++ + A++ Y ++S+ A+PTL NA T + QLSSC++ D+ IEGI+
Sbjct: 171 MFLAQNEQELNKIALEFYEVLSKFEAMCATPTLANARTTKHQLSSCYIGSTPDN-IEGIF 229
Query: 233 ETLKECAVISKSAGGIGVSVHNIRATGSYIRGTNGTSNGIVPMLRVFNDTARYVDQGGGK 292
++ KE A++SK GGIG +R+ GSYI G S G +P L++ ND A VDQ G
Sbjct: 230 DSYKEMALLSKYGGGIGWDFSLVRSIGSYIDGHKNASAGTIPFLKIANDVAIAVDQLG-T 288
Query: 293 RKGAFAVYLEPWHADIFEFLNLKKNHGKEEHRARDLFYALWVPDLFMERVQTNGQWSLFC 352
RKGA AVYLE WH D+ EF++L+KN G E RA DLF ALWV DLFM+RV + W+LF
Sbjct: 289 RKGAIAVYLEIWHIDVMEFIDLRKNSGDERRRAHDLFPALWVCDLFMKRVLEDAMWTLFD 348
Query: 353 PNEASGLADCWGAEFEKLYTHYEREGK-AKKVVQAQNLWFEILTSQIETGTPYMLFKDTC 411
P E L + +G +FEK Y YE++ K K+ + A++LW +IL + E G P++ FKD
Sbjct: 349 PYECKDLTELYGQDFEKRYLEYEKDPKIIKEYINAKDLWKKILMNYFEAGLPFLAFKDNA 408
Query: 412 NRKSNQQNLGTIKSSNLCTEIIEYTSPTETAVCNLASIALPRFVREKD-VPVESHPSRIV 470
NR + + G I+SSNLCTEI + T+P + + F EK+ V +S+ ++
Sbjct: 409 NRCNPNAHAGIIRSSNLCTEIFQNTAPNHYYMQIEYTDGAIEFFEEKELVTTDSNITKCA 468
Query: 471 GS-------RGSK-----------------------NRFFDFEKLAEVTAIVTENLNKII 500
+G K ++ E + V I+ L+ +I
Sbjct: 469 NKLTSTDILKGKKIYIATKVAKDGQTAVCNLASINLSKINTEEDIKRVVPIMVRLLDNVI 528
Query: 501 DVNYYPVETARRSNLRHRPIGIGVQGLADTFILLGMAFESPEAQQLNKDIFETIYYHALK 560
D+N+YP + +NL++R IG+GV G A +A+ S E + + E I YHA+
Sbjct: 529 DLNFYPNRKVKATNLQNRAIGLGVMGEAQMLAEHQIAWGSKEHLEKIDALMEQISYHAID 588
Query: 561 TSSEIAAKEGPYETYHNSPVSKGILQPDMWNV---------IPSDRWDWGVLRDMISKNG 611
TS+ +A ++G Y+ + NS SKGI D N + + DW LR+ + NG
Sbjct: 589 TSANLAKEKGVYKDFENSEWSKGIFPIDKANNEALKLTEKGLFNHACDWQGLREKVKANG 648
Query: 612 VRNSLLVAPMPTASTSQILGNNECFEPYTSNIYSRRVLSGEFVVVNKHLLHDLTEMGIWS 671
+RN L+A PT+S S ++G + EP + LSG VV
Sbjct: 649 MRNGYLMAIAPTSSISILVGTTQTIEPIYKKKWFEENLSGLIPVV--------------- 693
Query: 672 PTIKNKIIYDDGSVQKIPEIPEELKMIYKTVWEIKQMTLVDMAVDRGCYIDQSQSLNIHM 731
+P + E Y + ++I L+ A R +IDQ QS+N+ +
Sbjct: 694 ----------------VPNLNVETWNFYTSAYDIDAKDLIKAAAVRQKWIDQGQSINVFL 737
Query: 732 --DQPNFKKVTSLHFRTWSRGLKTGMYYLRSRAAADAIKFTVDTSV 775
+ + K + ++ W GLK+ YYLRS + + K +D SV
Sbjct: 738 RIENASGKTLHEIYTLAWKLGLKS-TYYLRSESPSIDEKSVLDRSV 782
>sp|P50646|RIR1_BHV1C Ribonucleoside-diphosphate reductase large subunit OS=Bovine
herpesvirus 1.1 (strain Cooper) GN=UL39 PE=3 SV=1
Length = 787
Score = 285 bits (728), Expect = 1e-75, Method: Compositional matrix adjust.
Identities = 192/595 (32%), Positives = 296/595 (49%), Gaps = 51/595 (8%)
Query: 201 ASPTLFNAGTPRPQLSSCFLVCMK-DDSIEGIYETLKECAVISKSAGGIGVSVHNI-RAT 258
A+P + AG R L+SC+L+ + S E + E A I + GGIG+S + RA
Sbjct: 208 ATPIMLFAGRARGSLASCYLLNPQVSSSTEAVEAITTEVARILLNRGGIGISFQSFDRAV 267
Query: 259 GSYIRGTNGTSNGIVPMLRVFNDTARYVDQGGGKRKGAFAVYLEPWHADIFEFLNLKKNH 318
+ GI+ L++ + A ++ +R VYLEPWH D+ LN++
Sbjct: 268 ------SRDCKRGIMGALKLLDSMAMAINSDS-ERPTGICVYLEPWHCDVRAVLNMRGLL 320
Query: 319 GKEEH-RARDLFYALWVPDLFMERVQTNGQ------WSLFCPNEASGLADCWGAEFEKLY 371
++E R +LF LWVPDL +R + + W+LF + AS L+ G F Y
Sbjct: 321 ARDESTRCDNLFSCLWVPDLLFDRYLAHLEGREGVVWTLF-DDRASHLSRLHGPAFTAEY 379
Query: 372 THYEREGKAKKVVQAQNLWFEILTSQIETGTPYMLFKDTCNRKSNQQNLG-TIKSSNLCT 430
EREG + V Q+L F I+ S + TG+P+++FKD CNR + G + SNLCT
Sbjct: 380 ERLEREGLGVETVPVQDLAFLIVRSIVMTGSPFVMFKDACNRHYHMDTAGDALTGSNLCT 439
Query: 431 EIIEYTSPTETAVCNLASIALPRFVREKDVPVESHPSRIVGSRGSKNRFFDFEKLAEVTA 490
EI++ SP VCNLAS+ LPR VRE G G+ FDF L+ A
Sbjct: 440 EIVQRASPDAHGVCNLASVNLPRCVRE-------------GEGGALA--FDFAALSTAAA 484
Query: 491 IVTENLNKIIDVNYYPVETARRSNLRHRPIGIGVQGLADTFILLGMAFESPEAQQLNKDI 550
+N ++ YP E A R RHR +GIG QGL + LGM SP A++LN +I
Sbjct: 485 TAAIFVNAMMLGGQYPTEKAARGVARHRSLGIGFQGLHTLLLELGMDMLSPAARRLNVEI 544
Query: 551 FETIYYHALKTSSEIAAKE-GPYETYHNSPVSKGILQPDMW-NVIPSDRWDWGVLRDMIS 608
E + + TS+ + P+E + S ++G++ D + V+ S W LR+ ++
Sbjct: 545 AERLLLAVMATSATLCEYGCAPFEDFARSKFARGLMPFDGYEGVVLSLPRAWARLREKVA 604
Query: 609 KNGVRNSLLVAPMPTASTSQILGNNECFEPYTSNIYSRRVLSGEFV--------VVNKHL 660
++G+ N+ VA MPT S+SQ+ +E F P +N++S+ +SGE + + KH
Sbjct: 605 RHGLYNAQFVALMPTVSSSQVTEGSEGFSPVFTNMFSKVTMSGELLRPNLPLMRALRKHF 664
Query: 661 LHDLTEMGIWSPTIKNKIIYDDGSVQKIPEIPEELKMIYKTVWEIKQMTLVDMAVDRGCY 720
+ + +G + + P P +KT +E Q L+D+ DR +
Sbjct: 665 TREASRLGAVRALDREQWSVAAALGDLAPGHP---LAKFKTAFEYDQERLIDLCADRAPF 721
Query: 721 IDQSQSLNIHMDQPNFKKVTS-----LHFRTWSRGLKTGMYYLRSRAAADAIKFT 770
+DQSQS+++ + +P KV + L + +GLKTG+YY + R A + FT
Sbjct: 722 VDQSQSMSLFVTEPMDGKVPASQIMNLLVYAYKKGLKTGLYYCKIRKATNNGVFT 776
>sp|O83972|RIR1_TREPA Ribonucleoside-diphosphate reductase subunit alpha OS=Treponema
pallidum (strain Nichols) GN=nrdA PE=3 SV=1
Length = 845
Score = 283 bits (724), Expect = 4e-75, Method: Compositional matrix adjust.
Identities = 219/751 (29%), Positives = 356/751 (47%), Gaps = 115/751 (15%)
Query: 58 ELAAETAAAMTTNH-PDYASLAARIAV--------SNLHKNTKKSFSETIKDMYNHYNER 108
+L + A +T P + +AAR+ + ++L K SF E I Y E
Sbjct: 153 QLLIKAAVELTAQEAPQWELIAARLLMLDFSLALGTSLEKLNIHSFYEKIT-----YLEE 207
Query: 109 SGLKAPLIADDIYEIIMKNAACLDSEIIYDRDFDYDYFGFKTLERSYLLKVQGKV-VERP 167
+GL I ++ AA + + RD + Y + R Y+++ + V +E P
Sbjct: 208 AGLYGVYIRTHYSRAEIEEAA---TYLECSRDKLFTYSSLDMILRRYVIRTRAHVPLETP 264
Query: 168 QHMLMRVSIGIH----KDDIDSAIKTYHMMSQRWFTHASPTLFNAGTPRPQLSSCFLVCM 223
Q M + +++ + +D + + Y ++S+ T A+PTL NA P QLSSCF+ +
Sbjct: 265 QEMFLGIALHLAMNETQDRMQWVKRFYTVLSKLQVTVATPTLSNARKPFHQLSSCFVDTV 324
Query: 224 KDDSIEGIYETLKECAVISKSAGGIGVSVHNIRATGSYIRGTNGTSNGIVPMLRVFNDTA 283
D S++GIY ++ + +SK GG+G+ +RA G+ IRG G + GI+ +++ NDTA
Sbjct: 325 PD-SLDGIYRSIDNFSQVSKFGGGMGLYFGKVRAVGAPIRGFQGAAGGILRWIKLANDTA 383
Query: 284 RYVDQGGGKRKGAFAVYLEPWHADIFEFLNLKKNHGKEEHRARDLFYALWVPDLFMERVQ 343
VDQ G R+G+ AVYL+ WH DI EFL L+ N+G + +A D+F A+ PDLF + V+
Sbjct: 384 VAVDQLG-VRQGSVAVYLDVWHKDIPEFLQLRTNNGDDRMKAHDVFPAVCYPDLFWKTVR 442
Query: 344 TN--GQWSLFCPNE-----ASGLADCWGAEFEKLYTHYEREGK-AKKVVQAQNLWFEILT 395
N W L CP+E L D + E+EK Y ++ + +K+ + + L +L
Sbjct: 443 DNLGASWYLMCPHEILTVKGYALEDFYAEEWEKRYWDCVKDARISKRTIPIKELVRLVLK 502
Query: 396 SQIETGTPYMLFKDTCNRKSNQQNLGTIKSSNLCTEI----------------------- 432
S +ETGTP+ ++D NR + + G I SNLCTEI
Sbjct: 503 SVVETGTPFAFYRDHANRANPNGHRGIIYCSNLCTEIAQNMSAINLVSVKITEVDGQKVV 562
Query: 433 IEYTSPTETAVCNLASIALPRFVREKDVPVESHPSRIVGSRGSKNRFFDFEKLAEVTAIV 492
++ T P + VCNLAS+ L S D ++L EV +
Sbjct: 563 VQTTRPGDFVVCNLASLVL-----------------------SNIDLSDDKELREVVRVA 599
Query: 493 TENLNKIIDVNYYPVETARRSNLRHRPIGIGVQGLADTFILLGMAFESPEAQQLNKDIFE 552
L+ +ID+ YYPV A+ +N +R IG+GV G G+ +ES E IFE
Sbjct: 600 VRALDNVIDLTYYPVPYAQVTNAYYRAIGLGVSGYHHVLAQQGIDWESDEHLAFADRIFE 659
Query: 553 TIYYHALKTSSEIAAKEGPYETYHNSPVSKGILQPDMWNVIPSDRWDWGVLRDMISKNGV 612
I A++ S IA ++G Y + S G V DW L+ ++ +G+
Sbjct: 660 RINRAAIEASMTIAREKGAYGCFTGSDWCTGAYFRKRGYVSE----DWQRLQREVATHGM 715
Query: 613 RNSLLVAPMPTASTSQILGNNECFEPYTSNIYSRRVLSGEFVVVNKHLLHDLTEMGIWSP 672
RN L+A PT+STS I G +P ++ ++ L + + G+ P
Sbjct: 716 RNGYLLAVAPTSSTSIIAGTTAGVDP----------------IMKQYFLEE--KKGMLMP 757
Query: 673 TIKNKIIYDDGSVQKIPEIPEELKMIYKTVWEIKQMTLVDMAVDRGCYIDQSQSLNIHMD 732
+ P + ++ +YK+ ++Q + A R +IDQ+QS+N+++
Sbjct: 758 RVA-------------PSLSQKTCPLYKSAHAVEQRWSIRAAGLRQRHIDQAQSVNLYIT 804
Query: 733 QP-NFKKVTSLHFRTWSRGLKTGMYYLRSRA 762
K+V L+ W G+K+ +YY+RS++
Sbjct: 805 TDFTLKQVLDLYVYAWEVGMKS-LYYVRSQS 834
>sp|P50642|RIR1_EHV4 Ribonucleoside-diphosphate reductase large subunit OS=Equine
herpesvirus 4 (strain 1942) PE=3 SV=1
Length = 789
Score = 280 bits (717), Expect = 2e-74, Method: Compositional matrix adjust.
Identities = 189/599 (31%), Positives = 306/599 (51%), Gaps = 65/599 (10%)
Query: 201 ASPTLFNAGTPRPQLSSCFLVCMK-DDSIEGIYETLKECAVISKSAGGIGVSVHNIRATG 259
A+P + G ++SC+L+ + D I ++E I + GGIG+S+
Sbjct: 206 ATPIMLFGGRDCGSMASCYLLNPRVTDMNSAIPALMEEVGPILCNRGGIGLSLQRFNTPP 265
Query: 260 SYIRGTNGTSNGIVPMLRVFNDTARYVDQGGGKRKGAFAVYLEPWHADIFEFLNLKKNHG 319
T G S G++ +L++ + ++ G +R VY EPWHADI LN++
Sbjct: 266 -----TEGCSRGVMALLKLLDSMTMAINSDG-ERPTGVCVYFEPWHADIRAILNMRGMLA 319
Query: 320 KEEH-RARDLFYALWVPDLFMERVQ--TNGQ----WSLFCPNEASGLADCWGAEFEKLYT 372
++E R ++F +W PDLF +R Q +G+ W+LF + AS L +G +F + Y
Sbjct: 320 RDETVRCDNIFACMWTPDLFFDRYQRYVDGESGIMWTLF-DDTASHLCHMYGNDFTREYE 378
Query: 373 HYEREGKAKKVVQAQNLWFEILTSQIETGTPYMLFKDTCNRKS--NQQNLGTIKSSNLCT 430
ER G + Q++ F I+ S + TG+P+++FKD CNR + + G I SNLCT
Sbjct: 379 RLERCGFGIDAIPIQDMAFIIVRSAVMTGSPFLMFKDACNRHYHFDMRQRGAIMGSNLCT 438
Query: 431 EIIEYTSPTETAVCNLASIALPRFVREKDVPVESHPSRIVGSRGSKNRFFDFEKLAEVTA 490
EII++ T+ VCNLASI LP+ + +P P I G +FDF L A
Sbjct: 439 EIIQHADETQNGVCNLASINLPKCLA---LP----PPNIAGVP-----YFDFAALGRAAA 486
Query: 491 IVTENLNKIIDVNYYPVETARRSNLRHRPIGIGVQGLADTFILLGMAFESPEAQQLNKDI 550
T +N ++ + YP +++ +R +G+G+QGL TF++L + SPEA QLNK I
Sbjct: 487 TATIFVNAMMCASTYPTVKSQKGVEENRSLGLGIQGLHTTFLMLDLDMASPEAHQLNKQI 546
Query: 551 FETIYYHALKTSSEIAAKEG--PYETYHNSPVSKGILQPDMW-NVIPSDRWDWGVLRDMI 607
E + +++K S+ + K G P++ + +S S+G L D + NV ++R W LR I
Sbjct: 547 AERLLLNSMKASATL-CKLGMQPFKGFEDSKYSRGELPFDAYPNVTLTNRNAWRRLRTDI 605
Query: 608 SKNGVRNSLLVAPMPTASTSQILGNNECFEPYTSNIYSRRVLSGEFVVVNKHLLHDL--- 664
+ G+ NS VA MPT S+SQ+ ++E F P +N++S+ +GE + N L+ +
Sbjct: 606 KQYGLYNSQFVAYMPTVSSSQVTESSEGFSPVYTNLFSKVTATGEVLRPNVLLMRTIRSI 665
Query: 665 -------------TEMGIWSPTIKNKIIYDDGSVQKIPEIPEELKMIYKTVWEIKQMTLV 711
E WS G+ +P + L +KT +E Q L+
Sbjct: 666 FPQECARLQALSTLEAAKWSVV---------GAFGDLP-VGHPLSK-FKTAFEYDQTMLI 714
Query: 712 DMAVDRGCYIDQSQSLNIHMDQPN-----FKKVTSLHFRTWSRGLKTGMYYLRSRAAAD 765
+M DR ++DQSQS+++ + +P ++ +L + RGLKTGMYY + + A +
Sbjct: 715 NMCADRAAFVDQSQSMSLFITEPADGKLPASRIMNLLVHAYKRGLKTGMYYCKIKKATN 773
>sp|P74240|RIR1_SYNY3 Ribonucleoside-diphosphate reductase subunit alpha OS=Synechocystis
sp. (strain PCC 6803 / Kazusa) GN=nrdA PE=3 SV=1
Length = 767
Score = 271 bits (694), Expect = 1e-71, Method: Compositional matrix adjust.
Identities = 219/789 (27%), Positives = 352/789 (44%), Gaps = 103/789 (13%)
Query: 3 VVKRDGRQEAVHFDKITARLKKLSYGLSTEHCDPVLVSQKVCAGVYKGVTTSQLDELAAE 62
V++RDG ++ KI A + GL + + + + + +G++T ++ +
Sbjct: 33 VIRRDGSSTPLNIGKIRAVVDWACLGL---EVNSIALEAGLTTRLREGISTREIQDNLIS 89
Query: 63 TAAAMTT-NHPDYASLAARIAVSNLHKNTKKSFSETIKDMYNHYNERSGLKAPLIADDIY 121
A M + N PD+ +A R+ V +L K+T ++ Y + ++ + +
Sbjct: 90 CALEMCSPNEPDWRYVAGRLHVWSLWKDT------LVRRGYQYGQYLRTVQTKVTNGEYD 143
Query: 122 EIIM-------KNAACLDSEIIYDRDFDYDYFGFKTLERSYLLKVQGKVVERPQHMLMRV 174
I+ + A C I D D DYDY G L YLL + L+
Sbjct: 144 SRILTYSEGELQEAGCW---INSDWDTDYDYAGAVLLTSRYLLPNELPQEALLTCALLLA 200
Query: 175 SIGIHKDDIDSAIKTYHMMSQRWFTHASPTLFNAGTPRPQLSSCFLVCMKDDSIEGIYET 234
S+ + A + Y ++ R + A+P L N P L+SCF+V M+D+ +E I+
Sbjct: 201 SVEAPDRRLQWARRFYESIAARRISLATPILANLRVPGGSLTSCFIVAMEDN-LESIFGE 259
Query: 235 LKECAVISKSAGGIGVSVHNIRATGSYIRGTNGTSNGIVPMLRVFNDTARYVDQGGGKRK 294
+ A ISK+ GG+GV+V IRATGS++ G S G++P ++ NDTA V+Q GG+R
Sbjct: 260 ITNAARISKNGGGVGVNVSRIRATGSWVMGKPNASGGVIPWTKLLNDTAIAVNQ-GGRRA 318
Query: 295 GAFAVYLEPWHADIFEFLNLKKNHGKEEHRARDLFYALWVPDLFMERVQTNGQWSLFCPN 354
GA V L+ WH D+ EFL ++ +G + +A D+F L +PD FM RV W+L P
Sbjct: 319 GAVTVGLDVWHLDVPEFLEMQAENGDQRRKAYDIFPQLILPDEFMRRVINKEDWTLVDPY 378
Query: 355 EAS-----GLADCWGAEFEKLYTHYEREGKAK----KVVQAQNLWFEILTSQIETGTPYM 405
E LA+ WG +FE Y E K + A+ L+ +I+ +Q+ETG PY+
Sbjct: 379 EVREKMGIELAELWGEQFEGAYREIESNLDTTITLYKRINARELFKQIMRTQVETGMPYL 438
Query: 406 LFKDTCNRKSNQQNLGTIKSSNLCTEIIEYTSPTETA-VCNLASIALPRFVREKDVPVES 464
FKDT N+ + ++LG I +NLC E +P + A CNL S+ L
Sbjct: 439 SFKDTINKANPNKHLGYIPGTNLCCESFSNVTPGQDAHCCNLVSLNLAN----------- 487
Query: 465 HPSRIVGSRGSKNRFFDFEKLAEVTAIVTENLNKIIDVNYYPVETARRSNLRHRPIGIGV 524
D + +A V+ I L+ I++ P A+ N ++R IG+G
Sbjct: 488 ---------------LDLQDIAGVSQIAVRMLDNTIELTAPPFADAKSHNNKYRTIGVGA 532
Query: 525 QGLADTFILLGMAFESPEAQQLNKDIFETIYYHALKTSSEIAAKEGPYETYHNSPVSKGI 584
GLAD + ++ E +N+ +FE I Y ++S E+A + G Y + S KG+
Sbjct: 533 MGLADWLAKRRLNYD--ELADINR-LFEEIGYWCTQSSMELAKERGAYPAFPGSDWQKGL 589
Query: 585 L---QPDMW---NVIPSDRWDWGVLRDMISKNGVRNSLLVAPMPTASTSQILGNNECFEP 638
L +P W N +RW+ L + I +G+RNS + A P S+S + G P
Sbjct: 590 LIGSKPVSWFQANAAKPERWE--KLSNDIQTHGIRNSHITAIAPNTSSSLVQGCTASILP 647
Query: 639 YTSNIYSRRVLSGEFVVVNKHLLHDLTEMGIWSPTIKNKIIYDDGSVQKIPEIPEELKMI 698
S + + G + P I N + PE M
Sbjct: 648 VYSRFFYDKWAKGTVPIA--------------PPFIGNCFWF----------YPENKTMD 683
Query: 699 YKTVWEIKQMTLVDMAVDRGCYIDQSQSLNIHMDQP-------NFKKVTSLHFRTWSRGL 751
+ V +K + + D G ++ +LN + P N K + W G
Sbjct: 684 QRKV--VKAVAAIQQWTDTGISMELLFNLNAGIYFPEEPERSLNAKDIFDTLVMAWEAGC 741
Query: 752 KTGMYYLRS 760
K +YY+R+
Sbjct: 742 K-AIYYIRT 749
>sp|Q77MS1|RIR1_GAHVM Ribonucleoside-diphosphate reductase large subunit OS=Gallid
herpesvirus 2 (strain Chicken/Md5/ATCC VR-987) GN=MDV052
PE=3 SV=1
Length = 822
Score = 270 bits (689), Expect = 4e-71, Method: Compositional matrix adjust.
Identities = 192/615 (31%), Positives = 296/615 (48%), Gaps = 77/615 (12%)
Query: 193 MSQRWFTHASPTLFNAGTPRPQLSSCFLVCMKDDSIEGIYETLKECAVISKSA-GGIGVS 251
++ + F ++P + G +SC+L+ + ++ + + + E V A GGIG+S
Sbjct: 240 LANQLFVPSTPCMLFLGREGTSTASCYLMDPRTNNTQDTLKAITEDVVPHLLARGGIGIS 299
Query: 252 VHNIRATGSYIRGTNGTSNGIVPMLRVFNDTARYVDQGGGKRKGAFAVYLEPWHADIFEF 311
+ ++ G + G++ +++V + + + G VYLEPWHADI
Sbjct: 300 LQHL--NGKF---------GLMHVMKVLDSLVMAANVNESRPTG-ICVYLEPWHADIMSA 347
Query: 312 LNLKKNHGKEEHRARD-LFYALWVPDLFMERV--QTNGQ----WSLFCPNEASGLADCWG 364
LN++ EE R D +F ALW DL +R NG+ W+LF + AS L
Sbjct: 348 LNMRGMVAAEESRRCDNVFLALWSCDLLFKRYLRHVNGEKNVIWTLF-DSRASILTKLHS 406
Query: 365 AEFEKLYTHYEREGKAKKVVQAQNLWFEILTSQIETGTPYMLFKDTCNRK--SNQQNLGT 422
EFEK Y E EG + +++ F I+ S TG+P++LFKD CNR +N Q
Sbjct: 407 EEFEKEYERLESEGLGVASIPIRDMMFAIIKSAASTGSPFILFKDACNRHYITNTQG-DA 465
Query: 423 IKSSNLCTEIIEYTSPTETAVCNLASIALPRFVREKDVPVESHPSRIVGSRGSKNRFFDF 482
I SNLCTEII+ T VC+LASI L R VR D NR FDF
Sbjct: 466 IAGSNLCTEIIQKTDANTNGVCSLASINLARCVRNID----------------GNRQFDF 509
Query: 483 EKLAEVTAIVTENLNKIIDVNYYPVETARRSNLRHRPIGIGVQGLADTFILLGMAFESPE 542
+ L + T +N I++ + P E + R+R +GIGVQG F+ +G+
Sbjct: 510 DALRYAVRLATVFVNAIMEGSDVPTEKSHSGRERNRSMGIGVQGFHTAFLSMGLDLCDER 569
Query: 543 AQQLNKDIFETIYYHALKTSSEIAAKE-GPYETYHNSPVSKGILQPDMW-NVIPSDRWDW 600
A+ LNK IFE + A+ S E + P+ + NS ++G L D W NV + +W
Sbjct: 570 ARSLNKLIFEFMLLEAMTVSCEFCERGLPPFADFSNSYYARGRLHFDGWANVELAAVEEW 629
Query: 601 GVLRDMISKNGVRNSLLVAPMPTASTSQILGNNECFEPYTSNIYSRRVLSGEFVVVNKHL 660
+LRD I G+ N+ +A MPTA+++Q+ +E F P SN++S+ +GE + N L
Sbjct: 630 NMLRDRIVSAGLYNAQFIALMPTAASAQVTEVSEGFSPLFSNMFSKVTSTGELLRPNIQL 689
Query: 661 LHDLTEMGIWSPTIKNKIIYDDGSVQKIPEI-----------------PEELKMI-YKTV 702
+ +L + IY D Q++ I PE ++ YKT
Sbjct: 690 MEEL------------RTIYLDNENQRLATIAALESANWNIQTALGNKPECHSLLKYKTA 737
Query: 703 WEIKQMTLVDMAVDRGCYIDQSQSLNIHMDQPN-----FKKVTSLHFRTWSRGLKTGMYY 757
++ Q L+D+ DR ++DQSQS+ + + + +V +L + GLKTGMYY
Sbjct: 738 FDYDQALLIDLCSDRAPFVDQSQSMTLFITETADGTLLASRVMNLLLHAYKAGLKTGMYY 797
Query: 758 LRSRAAADAIKFTVD 772
+ R A +A F D
Sbjct: 798 CKIRKATNAGVFCGD 812
>sp|P08543|RIR1_HHV11 Ribonucleoside-diphosphate reductase large subunit OS=Human
herpesvirus 1 (strain 17) GN=UL39 PE=3 SV=2
Length = 1137
Score = 268 bits (686), Expect = 1e-70, Method: Compositional matrix adjust.
Identities = 201/671 (29%), Positives = 319/671 (47%), Gaps = 60/671 (8%)
Query: 131 LDSEIIYDRDFDYDYFGFKTLERSYLL--KVQGKVVERPQHMLMRVSIGIHKDDIDSAIK 188
L S + Y+ +F FG +E + + ++ G + R + +++G +
Sbjct: 494 LQSALKYE-EFYLKRFGGHYMESVFQMYTRIAGFLACRATRGMRHIALGREGSWWEMFKF 552
Query: 189 TYHMMSQRWFTHASPTLFNAGTPRPQLSSCFLVCMKDDSIEGIYETLKE--CAVISKSAG 246
+H + ++P + N GT SSC+LV + + + + A+++++ G
Sbjct: 553 FFHRLYDHQIVPSTPAMLNLGTRNYYTSSCYLVNPQATTNKATLRAITSNVSAILARN-G 611
Query: 247 GIGVSVHNIRATGSYIRGTNGTSNGIVPMLRVFNDTARYVDQGGGKRKGAFAVYLEPWHA 306
GIG+ V +G GT++ ++P L+V + ++ + GA VYLEPWH
Sbjct: 612 GIGLCVQAFNDSGP------GTAS-VMPALKVLDSLVAAHNKESARPTGA-CVYLEPWHT 663
Query: 307 DIFEFLNLKKN-HGKEEHRARDLFYALWVPDLFMERV------QTNGQWSLFCPNEASGL 359
D+ L +K G+E R ++F ALW+PDLF +R+ + N W+LF + + L
Sbjct: 664 DVRAVLRMKGVLAGEEAQRCDNIFSALWMPDLFFKRLIRHLDGEKNVTWTLFDRDTSMSL 723
Query: 360 ADCWGAEFEKLYTHYEREGKAKKVVQAQNLWFEILTSQIETGTPYMLFKDTCNRKSNQQN 419
AD G EFEKLY H E G +++ Q L + I+ S TG+P+++FKD NR
Sbjct: 724 ADFHGEEFEKLYQHLEVMGFGEQI-PIQELAYGIVRSAATTGSPFVMFKDAVNRHYIYDT 782
Query: 420 LGT-IKSSNLCTEIIEYTSPTETAVCNLASIALPRFVREKDVPVESHPSRIVGSRGSKNR 478
G I SNLCTEI+ S + VCNL S+ L R V +
Sbjct: 783 QGAAIAGSNLCTEIVHPASKRSSGVCNLGSVNLARCVSRQT------------------- 823
Query: 479 FFDFEKLAEVTAIVTENLNKIIDVNYYPVETARRSNLRHRPIGIGVQGLADTFILLGMAF 538
FDF +L + +N +ID P R N R +GIG+QGL + LG+
Sbjct: 824 -FDFGRLRDAVQACVLMVNIMIDSTLQPTPQCTRGNDNLRSMGIGMQGLHTACLKLGLDL 882
Query: 539 ESPEAQQLNKDIFETIYYHALKTSSEIAAKEG-PYETYHNSPVSKGILQPDMWNVIPSDR 597
ES E Q LNK I E + A+KTS+ + + P+ + S G W P R
Sbjct: 883 ESAEFQDLNKHIAEVMLLSAMKTSNALCVRGARPFNHFKRSMYRAGRFH---WERFPDAR 939
Query: 598 ----WDWGVLRDMISKNGVRNSLLVAPMPTASTSQILGNNECFEPYTSNIYSRRVLSGEF 653
+W +LR + K+G+RNS VA MPTA+++QI +E F P +N++S+ GE
Sbjct: 940 PRYEGEWEMLRQSMMKHGLRNSQFVALMPTAASAQISDVSEGFAPLFTNLFSKVTRDGET 999
Query: 654 VVVNKHLLHDL--TEMGIWSPTIKNKIIYDDGSV-QKIPEI-PEELKMIYKTVWEIKQMT 709
+ N LL +L T G + + + SV Q +P + P +KT ++ Q
Sbjct: 1000 LRPNTLLLKELERTFSGKRLLEVMDSLDAKQWSVAQALPCLEPTHPLRRFKTAFDYDQKL 1059
Query: 710 LVDMAVDRGCYIDQSQSLNIHMDQPN-----FKKVTSLHFRTWSRGLKTGMYYLRSRAAA 764
L+D+ DR Y+D SQS+ +++ + + L + RGLKTGMYY + R A
Sbjct: 1060 LIDLCADRAPYVDHSQSMTLYVTEKADGTLPASTLVRLLVHAYKRGLKTGMYYCKVRKAT 1119
Query: 765 DAIKFTVDTSV 775
++ F D ++
Sbjct: 1120 NSGVFGGDDNI 1130
>sp|P50643|RIR1_SUHVK Ribonucleoside-diphosphate reductase large subunit OS=Suid
herpesvirus 1 (strain Kaplan) GN=RR1 PE=3 SV=1
Length = 835
Score = 268 bits (686), Expect = 1e-70, Method: Compositional matrix adjust.
Identities = 177/602 (29%), Positives = 300/602 (49%), Gaps = 48/602 (7%)
Query: 190 YHMMSQRWFTHASPTLFNAGTPRPQLSSCFLV-CMKDDSIEGIYETLKECAVISKSAGGI 248
+ ++ + A+P + AG R L+SC+L+ + + E + E A I GG+
Sbjct: 250 FRALATQAIVPATPLMLFAGRARGSLASCYLLNPLPRTTEEAVRAITDEVAPILLRRGGV 309
Query: 249 GVSVHNIRATGSYIRGTNGTSNGIVPMLRVFNDTARYVDQGGGKRKGAFAVYLEPWHADI 308
G+S+ + T S + GI+ +L+ + ++ +R VY+EPWHAD+
Sbjct: 310 GLSLQSFNRTPS-----GDCTRGIMAVLKALDSMTAAINSDS-ERPTGVCVYVEPWHADV 363
Query: 309 FEFLNLKKNHGKEEH-RARDLFYALWVPDLFMERVQ--TNGQ----WSLFCPNEASGLAD 361
LN++ +E R ++F LW PDLF +R Q +G+ W+LF + AS LA
Sbjct: 364 RAVLNMRGMLAADESLRCDNIFSCLWTPDLFFQRYQRHLDGERAVKWTLF-DDRASHLAS 422
Query: 362 CWGAEFEKLYTHYEREGKAKKVVQAQNLWFEILTSQIETGTPYMLFKDTCNRKSNQQNLG 421
G +F + Y ER G + + Q++ F I+ S + TG+P+++ KD CNR + G
Sbjct: 423 LHGPDFAREYERLERLGLGVESLPIQDMAFLIVRSAVMTGSPFLMMKDACNRHFHTDTRG 482
Query: 422 T-IKSSNLCTEIIEYTSPTETAVCNLASIALPRFVREKDVPVESHPSRIVGSRGSKNRFF 480
+ +SNLCTEI++ +P E VCNLAS+ LP + + G F
Sbjct: 483 AALATSNLCTEIVQRATPGENGVCNLASVNLP--------------ACLAGGA------F 522
Query: 481 DFEKLAEVTAIVTENLNKIIDVNYYPVETARRSNLRHRPIGIGVQGLADTFILLGMAFES 540
DF L + +N ++ + YP + R R +GIG+QGL T + L M
Sbjct: 523 DFAALRRAARVAAVFVNAMMRIGNYPTGASVEGVRRSRSLGIGLQGLHTTVLALDMDMAD 582
Query: 541 PEAQQLNKDIFETIYYHALKTSSEIAAKE-GPYETYHNSPVSKGILQPDMWNVIP-SDRW 598
P A++LN I E + Y + S E+ + P++ + +S ++G++ D + + +
Sbjct: 583 PAARRLNAAIAEELLYGVMDASVELCERGLRPFDGFEHSRYARGVMPFDAYERVSLREPM 642
Query: 599 DWGVLRDMISKNGVRNSLLVAPMPTASTSQILGNNECFEPYTSNIYSRRVLSGEFVVVNK 658
W LR I+++GV N+ VA MPT S+SQ+ ++E F P +N++S+ +SGE + N
Sbjct: 643 RWDALRVRIAEHGVYNAQFVALMPTVSSSQVTESSEGFSPTFTNMFSKVTISGELLRPNL 702
Query: 659 HLLHDLTEMGIWSPTIKNKIIYDDGSVQKIP----EIPEELKMI-YKTVWEIKQMTLVDM 713
L+ L + ++ + + + + E+P + +KT +E Q L+DM
Sbjct: 703 PLMETLRRLFPRECARRDAVARLERAQWSVAAAFGELPAGHPLAKFKTAFEYDQELLIDM 762
Query: 714 AVDRGCYIDQSQSLNIHMDQP-----NFKKVTSLHFRTWSRGLKTGMYYLRSRAAADAIK 768
DR ++D SQS+++ + +P + +V L R ++ GLKTGMYY + R A +
Sbjct: 763 CADRAPFVDHSQSMSLFLTEPADGKLHASRVMGLLMRAYNLGLKTGMYYCKIRKATNNGV 822
Query: 769 FT 770
FT
Sbjct: 823 FT 824
>sp|P28846|RIR1_EHV1B Ribonucleoside-diphosphate reductase large subunit OS=Equine
herpesvirus 1 (strain Ab4p) GN=21 PE=3 SV=1
Length = 790
Score = 267 bits (683), Expect = 2e-70, Method: Compositional matrix adjust.
Identities = 188/598 (31%), Positives = 301/598 (50%), Gaps = 63/598 (10%)
Query: 201 ASPTLFNAGTPRPQLSSCFLVCMK-DDSIEGIYETLKECAVISKSAGGIGVSVHNIRATG 259
A+P + G L+SC+L+ + D + ++E I + GGIG+S+
Sbjct: 207 ATPIMLFGGRDCGSLASCYLLNPRVTDMNSAMLALMEEAGPILCNRGGIGLSLQRFNTPP 266
Query: 260 SYIRGTNGTSNGIVPMLRVFNDTARYVDQGGGKRKGAFAVYLEPWHADIFEFLNLKKNHG 319
G S G++ +L++ + ++ G +R VY EPWHADI LN++
Sbjct: 267 K-----EGCSRGVMALLKLIDSMTMAINSDG-ERPTGVCVYFEPWHADIRAILNMRGMLA 320
Query: 320 KEEH-RARDLFYALWVPDLFMERVQ------TNGQWSLFCPNEASGLADCWGAEFEKLYT 372
++E R ++F +W PDLF +R Q + W+LF + AS L +G EFE+ Y
Sbjct: 321 RDETVRCDNIFACMWTPDLFFDRYQRYLDGESGVMWTLF-DDTASHLCHMYGKEFEEEYE 379
Query: 373 HYEREGKAKKVVQAQNLWFEILTSQIETGTPYMLFKDTCNRKS--NQQNLGTIKSSNLCT 430
E+ G + Q++ F I+ S + TG+P+++FKD CN+ + + G I SNLCT
Sbjct: 380 RLEQCGFGVDSIPIQDMAFIIVRSAVMTGSPFLMFKDACNKHYHFDLRRKGAIMGSNLCT 439
Query: 431 EIIEYTSPTETAVCNLASIALPRFVREKDVPVESHPSRIVGSRGSKNRFFDFEKLAEVTA 490
EII++ T+ VCNLASI LP+ + +P P G +FDF L A
Sbjct: 440 EIIQHADETQNGVCNLASINLPKCLA---IP----PPHTAGVP-----YFDFAALGRAAA 487
Query: 491 IVTENLNKIIDVNYYPVETARRSNLRHRPIGIGVQGLADTFILLGMAFESPEAQQLNKDI 550
T +N ++ YP ++R +R +G+G+QGL F++L + SPEA+QLNK I
Sbjct: 488 TATIFVNSMMRAGTYPTVKSQRGVDENRSLGLGIQGLHTAFLMLDLDMASPEARQLNKQI 547
Query: 551 FETIYYHALKTSSEIA-AKEGPYETYHNSPVSKGILQPDMW-NVIPSDRWDWGVLRDMIS 608
E + +++K S+ + P++ + +S S G L D + V ++R W LR I
Sbjct: 548 AERLLLNSMKASATLCRLGMKPFKGFEDSKYSLGELPFDSYPGVTLANRNAWRRLRTEIK 607
Query: 609 KNGVRNSLLVAPMPTASTSQILGNNECFEPYTSNIYSRRVLSGEFVVVNKHLLHDL---- 664
++G+ NS VA MPT S+SQ+ ++E F P +N++S+ +GE + N L+ +
Sbjct: 608 QHGLYNSQFVAYMPTVSSSQVTESSEGFSPVYTNLFSKVTATGEVLRPNLLLMRTIRSIF 667
Query: 665 ------------TEMGIWSPTIKNKIIYDDGSVQKIPEIPEELKMIYKTVWEIKQMTLVD 712
EM WS G+ +P + L +KT +E Q TL+D
Sbjct: 668 PRECARLQALSTLEMAQWSVV---------GAFGDLP-VGHPLSK-FKTAFEYDQRTLID 716
Query: 713 MAVDRGCYIDQSQSLNIHMDQPN-----FKKVTSLHFRTWSRGLKTGMYYLRSRAAAD 765
M DR ++DQSQS+++ + +P K+ SL + RGLKTGMYY + + A +
Sbjct: 717 MCADRAPFVDQSQSMSLFITEPADGKLPASKIMSLLVHAYKRGLKTGMYYCKIKKATN 774
>sp|P89462|RIR1_HHV2H Ribonucleoside-diphosphate reductase large subunit OS=Human
herpesvirus 2 (strain HG52) GN=UL39 PE=3 SV=1
Length = 1142
Score = 265 bits (678), Expect = 9e-70, Method: Compositional matrix adjust.
Identities = 196/673 (29%), Positives = 316/673 (46%), Gaps = 64/673 (9%)
Query: 131 LDSEIIYDRDFDYDYFGFKTLERSYLL--KVQGKVVERPQHMLMRVSIGIHKDDIDSAIK 188
L S + Y+ +F FG +E + + ++ G + R + +++G +
Sbjct: 499 LQSALKYE-EFYLKRFGGHYMESVFQMYTRIAGFLACRATRGMRHIALGRQGSWWEMFKF 557
Query: 189 TYHMMSQRWFTHASPTLFNAGTPRPQLSSCFLVCMKDDSIEGIYETLK-ECAVISKSAGG 247
+H + ++P + N GT SSC+LV + + + + + I GG
Sbjct: 558 FFHRLYDHQIVPSTPAMLNLGTRNYYTSSCYLVNPQATTNQATLRAITGNVSAILARNGG 617
Query: 248 IGVSVHNIRATGSYIRGTNGTSNGIVPMLRVFNDTARYVDQGGGKRKGAFAVYLEPWHAD 307
IG+ + ++ + GT++ I+P L+V + ++ + GA VYLEPWH+D
Sbjct: 618 IGLCMQ------AFNDASPGTAS-IMPALKVLDSLVAAHNKQSTRPTGA-CVYLEPWHSD 669
Query: 308 IFEFLNLKKN-HGKEEHRARDLFYALWVPDLFMERV------QTNGQWSLFCPNEASGLA 360
+ L +K G+E R ++F ALW+PDLF +R+ + N WSLF + + LA
Sbjct: 670 VRAVLRMKGVLAGEEAQRCDNIFSALWMPDLFFKRLIRHLDGEKNVTWSLFDRDTSMSLA 729
Query: 361 DCWGAEFEKLYTHYEREGKAKKVVQAQNLWFEILTSQIETGTPYMLFKDTCNRKSNQQNL 420
D G EFEKLY H E G + + Q+L + I+ S TG+P+++FKD NR
Sbjct: 730 DFHGEEFEKLYEHLEAMGFGE-TIPIQDLAYAIVRSAATTGSPFIMFKDAVNRHYIYDTQ 788
Query: 421 GT-IKSSNLCTEIIEYTSPTETAVCNLASIALPRFVREKDVPVESHPSRIVGSRGSKNRF 479
G I SNLCTEI+ S + VCNL S+ L R V +
Sbjct: 789 GAAIAGSNLCTEIVHPASKRSSGVCNLGSVNLARCVSRQT-------------------- 828
Query: 480 FDFEKLAEVTAIVTENLNKIIDVNYYPVETARRSNLRHRPIGIGVQGLADTFILLGMAFE 539
FDF +L + +N +ID P R N R +GIG+QGL + +G+ E
Sbjct: 829 FDFGRLRDAVQACVLMVNIMIDSTLQPTPQCTRGNDNLRSMGIGMQGLHTACLKMGLDLE 888
Query: 540 SPEAQQLNKDIFETIYYHALKTSSEIAAKEG-PYETYHNSPVSKGILQPDMW-NVIPSDR 597
S E + LN I E + A+KTS+ + + P+ + S G + + N P
Sbjct: 889 SAEFRDLNTHIAEVMLLAAMKTSNALCVRGARPFSHFKRSMYRAGRFHWERFSNASPRYE 948
Query: 598 WDWGVLRDMISKNGVRNSLLVAPMPTASTSQILGNNECFEPYTSNIYSRRVLSGEFVVVN 657
+W +LR + K+G+RNS +A MPTA+++QI +E F P +N++S+ GE + N
Sbjct: 949 GEWEMLRQSMMKHGLRNSQFIALMPTAASAQISDVSEGFAPLFTNLFSKVTRDGETLRPN 1008
Query: 658 KHLLHDLTEMGIWSPTIKNKIIYD--DGSVQKIPEIPEELKMI--------YKTVWEIKQ 707
LL +L T K + D DG K + + L + +KT ++ Q
Sbjct: 1009 TLLLKELER------TFGGKRLLDAMDGLEAKQWSVAQALPCLDPAHPLRRFKTAFDYDQ 1062
Query: 708 MTLVDMAVDRGCYIDQSQSLNIHMDQPN-----FKKVTSLHFRTWSRGLKTGMYYLRSRA 762
L+D+ DR Y+D SQS+ +++ + + L + RGLKTGMYY + R
Sbjct: 1063 ELLIDLCADRAPYVDHSQSMTLYVTEKADGTLPASTLVRLLVHAYKRGLKTGMYYCKVRK 1122
Query: 763 AADAIKFTVDTSV 775
A ++ F D ++
Sbjct: 1123 ATNSGVFAGDDNI 1135
>sp|P09853|RIR1_HHV23 Ribonucleoside-diphosphate reductase large subunit OS=Human
herpesvirus 2 (strain 333) PE=3 SV=2
Length = 1144
Score = 264 bits (674), Expect = 2e-69, Method: Compositional matrix adjust.
Identities = 196/673 (29%), Positives = 316/673 (46%), Gaps = 64/673 (9%)
Query: 131 LDSEIIYDRDFDYDYFGFKTLERSYLL--KVQGKVVERPQHMLMRVSIGIHKDDIDSAIK 188
L S + Y+ +F FG +E + + ++ G + R + +++G +
Sbjct: 501 LQSALKYE-EFYLKRFGGHYMESVFQMYTRIAGFLACRATRGMRHIALGRQGSWWEMFKF 559
Query: 189 TYHMMSQRWFTHASPTLFNAGTPRPQLSSCFLVCMKDDSIEGIYETLK-ECAVISKSAGG 247
+H + ++P + N GT SSC+LV + + + + + I GG
Sbjct: 560 FFHRLYDHQIVPSTPAMLNLGTRNYYTSSCYLVNPQATTNQATLRAITGNVSAILARNGG 619
Query: 248 IGVSVHNIRATGSYIRGTNGTSNGIVPMLRVFNDTARYVDQGGGKRKGAFAVYLEPWHAD 307
IG+ + ++ + GT++ I+P L+V + ++ + GA VYLEPWH+D
Sbjct: 620 IGLCMQ------AFNDASPGTAS-IMPALKVLDSLVAAHNKQSTRPTGA-CVYLEPWHSD 671
Query: 308 IFEFLNLKKN-HGKEEHRARDLFYALWVPDLFMERV------QTNGQWSLFCPNEASGLA 360
+ L +K G+E R ++F ALW+PDLF +R+ + N WSLF + + LA
Sbjct: 672 VRAVLRMKGVLAGEEAQRCDNIFSALWMPDLFFKRLIRHLDGEKNVTWSLFDRDTSMSLA 731
Query: 361 DCWGAEFEKLYTHYEREGKAKKVVQAQNLWFEILTSQIETGTPYMLFKDTCNRKSNQQNL 420
D G EFEKLY H E G + + Q+L + I+ S TG+P+++FKD NR
Sbjct: 732 DFHGEEFEKLYEHLEAMGFGE-TIPIQDLAYAIVRSAATTGSPFIMFKDAVNRHYIYDTQ 790
Query: 421 GT-IKSSNLCTEIIEYTSPTETAVCNLASIALPRFVREKDVPVESHPSRIVGSRGSKNRF 479
G I SNLCTEI+ +S + VCNL S+ L R V R
Sbjct: 791 GAAIAGSNLCTEIVHPSSKRSSGVCNLGSVNLARCV--------------------SRRT 830
Query: 480 FDFEKLAEVTAIVTENLNKIIDVNYYPVETARRSNLRHRPIGIGVQGLADTFILLGMAFE 539
FDF L + +N +ID P R + R +GIG+QGL + +G+ E
Sbjct: 831 FDFGMLRDAVQACVLMVNIMIDSTLQPTPQCARGHDNLRSMGIGMQGLHTACLKMGLDLE 890
Query: 540 SPEAQQLNKDIFETIYYHALKTSSEIAAKEG-PYETYHNSPVSKGILQPDMW-NVIPSDR 597
S E + LN I E + A+KTS+ + + P+ + S G + + N P
Sbjct: 891 SAEFRDLNTHIAEVMLLAAMKTSNALCVRGARPFSHFKRSMYRAGRFHWERFSNASPRYE 950
Query: 598 WDWGVLRDMISKNGVRNSLLVAPMPTASTSQILGNNECFEPYTSNIYSRRVLSGEFVVVN 657
+W +LR + K+G+RNS +A MPTA+++QI +E F P +N++S+ GE + N
Sbjct: 951 GEWEMLRQSMMKHGLRNSQFIALMPTAASAQISDVSEGFAPLFTNLFSKVTRDGETLRPN 1010
Query: 658 KHLLHDLTEMGIWSPTIKNKIIYD--DGSVQKIPEIPEELKMI--------YKTVWEIKQ 707
LL +L T K + D DG K + + L + +KT ++ Q
Sbjct: 1011 TLLLKELER------TFGGKRLLDAMDGLEAKQWSVAQALPCLDPAHPLRRFKTAFDYDQ 1064
Query: 708 MTLVDMAVDRGCYIDQSQSLNIHMDQPN-----FKKVTSLHFRTWSRGLKTGMYYLRSRA 762
L+D+ DR Y+D SQS+ +++ + + L + RGLKTGMYY + R
Sbjct: 1065 ELLIDLCADRAPYVDHSQSMTLYVTEKADGTLPASTLVRLLVHAYKRGLKTGMYYCKVRK 1124
Query: 763 AADAIKFTVDTSV 775
A ++ F D ++
Sbjct: 1125 ATNSGVFAGDDNI 1137
>sp|Q6UDJ2|RIR1_PSHV1 Ribonucleoside-diphosphate reductase large subunit OS=Psittacid
herpesvirus 1 (isolate Amazon parrot/-/97-0001/1997)
GN=UL39 PE=3 SV=1
Length = 811
Score = 260 bits (664), Expect = 3e-68, Method: Compositional matrix adjust.
Identities = 185/624 (29%), Positives = 292/624 (46%), Gaps = 43/624 (6%)
Query: 177 GIHKDDIDSAIKTYHM-MSQRWFTHASPTLFNAGTPRPQLSSCFLVCMKDDSIEGIYETL 235
G D ++ + M + ++ +P + AGT +SCFL+ ++ + ++
Sbjct: 205 GTRAPDANTVFCLFFMALCRQEIVPPTPVMLFAGTESRSYASCFLLDVRGRHTRDVLTSI 264
Query: 236 KECAV-ISKSAGGIGVSVHNIRATGSYIRGTNGTSNGIVPMLRVFNDTARYVDQGGGKRK 294
E + + S GGIG+ + + S+G++ L+ D+ R
Sbjct: 265 AEEIIPVMHSHGGIGLYM-------DCDSNWDDNSSGMMLALKAL-DSIIAASNAVSARP 316
Query: 295 GAFAVYLEPWHADIFEFLNLKKN-HGKEEHRARDLFYALWVPDLFMERVQTNGQWSLFCP 353
VY+EPWH DI + L + G EE R + F+ALW+PDLFM+R + NG W+LF
Sbjct: 317 SGLCVYVEPWHRDIMKILRCRGVLAGNEETRCDNTFFALWMPDLFMKRFEANGTWTLF-D 375
Query: 354 NEASGLADCWGAEFEKLYTHYEREGKAKKVVQAQNLWFEILTSQIETGTPYMLFKDTCNR 413
A+ L+D +G EFEK Y ER+ A+++ F ++ S + TGTP+++FK NR
Sbjct: 376 GRAAHLSDLYGEEFEKEYELLERKNVGIATYPARDVMFALIKSAVSTGTPFVMFKHAVNR 435
Query: 414 KSNQQNLG-TIKSSNLCTEIIEYTSPTETAVCNLASIALPRFVREKDVPVESHPSRIVGS 472
G +K SNLCTEI+ T VCNL S+ L FV ++ + P +G+
Sbjct: 436 NYFFDMAGRAMKCSNLCTEIVHMTDDESVGVCNLTSLNLAAFVTRRNALPGTPP---IGT 492
Query: 473 RGSKNRFFDFEKLAEVTAIVTENLNKIIDVNYYPVETARRSNLRHRPIGIGVQGLADTFI 532
FD+ + A+ T +N ++ ++ P++ A N R R IGIGVQG +
Sbjct: 493 -------FDYSSFRDACAVATVFINALMSLSNLPIKRATTGNERLRSIGIGVQGFHTACL 545
Query: 533 LLGMAFESPEAQQLNKDIFETIYYHALKTSSEIAA-KEGPYETYHNSPVSKGILQPDMWN 591
L G +S EA + N +FE + +TS I P+ + S +KG L D W
Sbjct: 546 LQGFGLDSVEACRFNGKLFEALALTTFQTSCRICELGMNPFRGFSESKYAKGWLHMDGWP 605
Query: 592 V--IPSDRWDWGVLRDMISKNGVRNSLLVAPMPTASTSQILGNNECFEPYTSNIYSRRVL 649
+ D WD LR+ I G+ N LVA MPTAS+SQ+ +E P NI+S+
Sbjct: 606 ARHLYFDGWDR--LRENIKAYGLYNCQLVALMPTASSSQLTEVSEGIHPVFGNIFSKITT 663
Query: 650 SGEFVVVNKHLLHDLTEM--------GIWSPTIKNKIIYDDGSVQKIPEIPEELKMIYKT 701
+GE + +N L+ + + I KNK +P K + T
Sbjct: 664 TGEDIQLNVALMETIECLYPNKAERRDILERLHKNKWSTRGAFGAALPSQHPLTK--FDT 721
Query: 702 VWEIKQMTLVDMAVDRGCYIDQSQSLNIHMDQPN-----FKKVTSLHFRTWSRGLKTGMY 756
+E Q L+ ++ DR ++D SQS +++ + + +V L + GLKTGMY
Sbjct: 722 AFEADQEHLLRLSADRAPFVDHSQSTTLYVVEEDDGAVRASRVAHLLTTAFKYGLKTGMY 781
Query: 757 YLRSRAAADAIKFTVDTSVFKEKP 780
Y + R A D F + ++ P
Sbjct: 782 YCKVRKATDNGVFLGTDTCRRDDP 805
>sp|Q4JQV6|RIR1_VZVO Ribonucleoside-diphosphate reductase large subunit
OS=Varicella-zoster virus (strain Oka vaccine) GN=ORF19
PE=3 SV=1
Length = 775
Score = 254 bits (649), Expect = 2e-66, Method: Compositional matrix adjust.
Identities = 181/597 (30%), Positives = 288/597 (48%), Gaps = 60/597 (10%)
Query: 201 ASPTLFNAGTPRPQLSSCFLVCMKDDSI---EGIYETLKECAVISKSAGGIGVSVHNIRA 257
A+P + G +SC+L M +SI + + + +S GG+G+S+ ++
Sbjct: 199 ATPVMMFLGRETGATASCYL--MDPESITVGRAVRAITGDVGTVLQSRGGVGISLQSLN- 255
Query: 258 TGSYIRGTNGTSNGIVPMLRVFNDTARYVDQGGGKRKGAFAVYLEPWHADIFEFLNLKKN 317
+ T + G++ +L++ + ++ +R VY+EPWH D+ L +
Sbjct: 256 ----LIPTENQTKGLLAVLKLLDCMVMAINSDC-ERPTGVCVYIEPWHVDLQTVLATRGM 310
Query: 318 HGKEE-HRARDLFYALWVPDLFMERV------QTNGQWSLFCPNEASGLADCWGAEFEKL 370
++E R ++F LW PDLF ER +N QW+LF N A L G F
Sbjct: 311 LVRDEIFRCDNIFCCLWTPDLFFERYLSYLKGASNVQWTLF-DNRADILRTLHGEAFTST 369
Query: 371 YTHYEREGKAKKVVQAQNLWFEILTSQIETGTPYMLFKDTCNRKSNQQNLG-TIKSSNLC 429
Y EREG V Q++ F I+ S TG+P+++FKD CNR + G I SNLC
Sbjct: 370 YLRLEREGLGVSSVPIQDIAFTIIRSAAVTGSPFLMFKDACNRNYHMNTQGNAITGSNLC 429
Query: 430 TEIIEYTSPTETAVCNLASIALPRFVREKDVPVESHPSRIVGSRGSKNRFFDFEKLAEVT 489
TEI++ + VCNLASI L + + V + D + A T
Sbjct: 430 TEIVQKADAHQHGVCNLASINLTTCLSKGPVSFNLN---------------DLQLTARTT 474
Query: 490 AIVTENLNKIIDVNYYPVETARRSNLRHRPIGIGVQGLADTFILLGMAFESPEAQQLNKD 549
I LN ++ +P + + + +R +GIG+QGL T + LG S A++LN
Sbjct: 475 VIF---LNGVLAAGNFPCKKSCKGVKNNRSLGIGIQGLHTTCLRLGFDLTSQPARRLNVQ 531
Query: 550 IFETIYYHALKTSSEIAAKEG--PYETYHNSPVSKGILQPDMWNVIPSDRWDWGVLRDMI 607
I E + Y +KTS E+ G P++ + S +KG L D ++ I W LRD I
Sbjct: 532 IAELMLYETMKTSMEMCKIGGLAPFKGFTESKYAKGWLHQDGFSTISYLDLPWCTLRDDI 591
Query: 608 SKNGVRNSLLVAPMPTASTSQILGNNECFEPYTSNIYSRRVLSGEFVVVNKHLLHDLTEM 667
G+ NS +A MPT S++Q+ +E F P +N++S+ SGE + N L+ +L +M
Sbjct: 592 CAYGLYNSQFLALMPTVSSAQVTECSEGFSPIYNNMFSKVTTSGELLRPNLDLMDELRDM 651
Query: 668 --------GIWSPTIKNK--IIYDDGSVQKIPEIPEELKMIYKTVWEIKQMTLVDMAVDR 717
+ + KN+ +I G + + + YKT +E +Q LVDM +R
Sbjct: 652 YSCEEKRLEVINILEKNQWSVIRSFGCLSNSHPL-----LKYKTAFEYEQEDLVDMCAER 706
Query: 718 GCYIDQSQSLNIHMDQ-PN----FKKVTSLHFRTWSRGLKTGMYYLRSRAAADAIKF 769
+IDQSQS+ + +++ P+ K+ +L R + GLKTGMYY + R A ++ F
Sbjct: 707 APFIDQSQSMTLFIEERPDGTIPASKIMNLLIRAYKAGLKTGMYYCKIRKATNSGLF 763
>sp|P09248|RIR1_VZVD Ribonucleoside-diphosphate reductase large subunit
OS=Varicella-zoster virus (strain Dumas) GN=ORF19 PE=3
SV=1
Length = 775
Score = 254 bits (649), Expect = 2e-66, Method: Compositional matrix adjust.
Identities = 181/597 (30%), Positives = 288/597 (48%), Gaps = 60/597 (10%)
Query: 201 ASPTLFNAGTPRPQLSSCFLVCMKDDSI---EGIYETLKECAVISKSAGGIGVSVHNIRA 257
A+P + G +SC+L M +SI + + + +S GG+G+S+ ++
Sbjct: 199 ATPVMMFLGRETGATASCYL--MDPESITVGRAVRAITGDVGTVLQSRGGVGISLQSLN- 255
Query: 258 TGSYIRGTNGTSNGIVPMLRVFNDTARYVDQGGGKRKGAFAVYLEPWHADIFEFLNLKKN 317
+ T + G++ +L++ + ++ +R VY+EPWH D+ L +
Sbjct: 256 ----LIPTENQTKGLLAVLKLLDCMVMAINSDC-ERPTGVCVYIEPWHVDLQTVLATRGM 310
Query: 318 HGKEE-HRARDLFYALWVPDLFMERV------QTNGQWSLFCPNEASGLADCWGAEFEKL 370
++E R ++F LW PDLF ER +N QW+LF N A L G F
Sbjct: 311 LVRDEIFRCDNIFCCLWTPDLFFERYLSYLKGASNVQWTLF-DNRADILRTLHGEAFTST 369
Query: 371 YTHYEREGKAKKVVQAQNLWFEILTSQIETGTPYMLFKDTCNRKSNQQNLG-TIKSSNLC 429
Y EREG V Q++ F I+ S TG+P+++FKD CNR + G I SNLC
Sbjct: 370 YLRLEREGLGVSSVPIQDIAFTIIRSAAVTGSPFLMFKDACNRNYHMNTQGNAITGSNLC 429
Query: 430 TEIIEYTSPTETAVCNLASIALPRFVREKDVPVESHPSRIVGSRGSKNRFFDFEKLAEVT 489
TEI++ + VCNLASI L + + V + D + A T
Sbjct: 430 TEIVQKADAHQHGVCNLASINLTTCLSKGPVSFNLN---------------DLQLTARTT 474
Query: 490 AIVTENLNKIIDVNYYPVETARRSNLRHRPIGIGVQGLADTFILLGMAFESPEAQQLNKD 549
I LN ++ +P + + + +R +GIG+QGL T + LG S A++LN
Sbjct: 475 VIF---LNGVLAAGNFPCKKSCKGVKNNRSLGIGIQGLHTTCLRLGFDLTSQPARRLNVQ 531
Query: 550 IFETIYYHALKTSSEIAAKEG--PYETYHNSPVSKGILQPDMWNVIPSDRWDWGVLRDMI 607
I E + Y +KTS E+ G P++ + S +KG L D ++ I W LRD I
Sbjct: 532 IAELMLYETMKTSMEMCKIGGLAPFKGFTESKYAKGWLHQDGFSTISYLDLPWCTLRDDI 591
Query: 608 SKNGVRNSLLVAPMPTASTSQILGNNECFEPYTSNIYSRRVLSGEFVVVNKHLLHDLTEM 667
G+ NS +A MPT S++Q+ +E F P +N++S+ SGE + N L+ +L +M
Sbjct: 592 CAYGLYNSQFLALMPTVSSAQVTECSEGFSPIYNNMFSKVTTSGELLRPNLDLMDELRDM 651
Query: 668 --------GIWSPTIKNK--IIYDDGSVQKIPEIPEELKMIYKTVWEIKQMTLVDMAVDR 717
+ + KN+ +I G + + + YKT +E +Q LVDM +R
Sbjct: 652 YSCEEKRLEVINILEKNQWSVIRSFGCLSNSHPL-----LKYKTAFEYEQEDLVDMCAER 706
Query: 718 GCYIDQSQSLNIHMDQ-PN----FKKVTSLHFRTWSRGLKTGMYYLRSRAAADAIKF 769
+IDQSQS+ + +++ P+ K+ +L R + GLKTGMYY + R A ++ F
Sbjct: 707 APFIDQSQSMTLFIEERPDGTIPASKIMNLLIRAYKAGLKTGMYYCKIRKATNSGLF 763
>sp|P57276|RIR1_BUCAI Ribonucleoside-diphosphate reductase subunit alpha OS=Buchnera
aphidicola subsp. Acyrthosiphon pisum (strain APS)
GN=nrdA PE=3 SV=1
Length = 761
Score = 250 bits (638), Expect = 4e-65, Method: Compositional matrix adjust.
Identities = 224/810 (27%), Positives = 365/810 (45%), Gaps = 120/810 (14%)
Query: 1 MYVVKRDGRQEAVHFDKITARLKKLSYGLSTEHCDPVLVSQ-KVCAGV--YKGVTTSQLD 57
++V KRDGR+E ++ DKI L S GL D V VSQ ++C+ + Y +TT +
Sbjct: 5 LFVTKRDGRKEKINLDKIHKVLNWASEGL-----DDVSVSQVELCSRIQFYNNITTINIH 59
Query: 58 ELAAETAAAMTT-NHPDYASLAARIAVSNLHKNTKKSFSETIKDMYNHYNERSGLKA--- 113
E + AA + + + PDY +AAR+A+ +L K F +Y+H + L+
Sbjct: 60 ETIIKAAADLISQDTPDYQYMAARLAIFHLRKKAYGQFEPP--KLYDHVKKMVDLEKYDE 117
Query: 114 PLIADDIYEIIMKNAACLDSEIIYDRDFDYDYFGFKTLERSYLL--KVQGKVVERPQHML 171
L+ + Y+ ++ ++S I + RD ++ Y K LE YL+ +V GK+ E Q +
Sbjct: 118 NLLKNYSYKEFLQ----MNSFIDHWRDMNFSYAAVKQLEGKYLIQNRVNGKIYESAQFLY 173
Query: 172 MRVSIGIHKD-----DIDSAIKTYHMMSQRWFTHASPTLFNAGTPRPQLSSCFLV-CMKD 225
+ +S + ++ + Y+ +S + +P + TP Q SSC L+ C
Sbjct: 174 ILISACLFSQYPKNVRMNYIHRFYNAISTFKISLPTPIMSGVRTPTRQFSSCVLIEC--G 231
Query: 226 DSIEGIYETLKECAVISKSAGGIGVSVHNIRATGSYIRGTNGTSNGIVPMLRVFNDTARY 285
DS+ I T GIGV+ IRA GS IR G +P + F +
Sbjct: 232 DSLNSINATTSSIVKYVSQRAGIGVNAGQIRALGSPIRNGEAFHTGCIPFYKHFQSAVKS 291
Query: 286 VDQGGGKRKGAFAVYLEPWHADIFEFLNLKKNHGKEEHRARDLFYALWVPDLFMERVQTN 345
QGG R GA ++ WH ++ L LK N G EE+R R + YA+ + L +R+ +
Sbjct: 292 CSQGG-VRGGAATIFYPIWHLEVESLLVLKNNRGIEENRVRHIDYAIQINKLMYQRMLSG 350
Query: 346 GQWSLFCPNEASGLADCWGAE---FEKLYTHYEREGKA-KKVVQAQNLWFEILTSQIETG 401
Q +LF P++ L + ++ F+K+Y YE+ KK ++A +L+ ++ + TG
Sbjct: 351 DQITLFSPSDVPDLYKAFFSDQKKFKKIYLQYEKNKNIRKKTIKALDLFSLMMQERTSTG 410
Query: 402 TPYMLFKDTCNRKSN-QQNLGTIKSSNLCTEIIEYTSPT-----------ETAVCNLASI 449
Y+ D CN S L I+ SNLC EI T PT E A+C L++
Sbjct: 411 RIYVQNVDHCNLHSAFNPELSPIRQSNLCLEI---TLPTKSLNDVHDTDGEIALCTLSAF 467
Query: 450 ALPRFVREKDVPVESHPSRIVGSRGSKNRFFDFEKLAEVTAIVTENLNKIIDVNYYPVET 509
L G DF+ E++ + L++I+D YPV
Sbjct: 468 NL----------------------GKIKSLDDFK---ELSILSVRALDEILDYQNYPVLA 502
Query: 510 ARRSNLRHRPIGIGVQGLADTFILLGMAFESPEAQQLNKDIFETIYYHALKTSSEIAAKE 569
A++S + R +GIGV A + + A L FE + Y+ L+ S E+A ++
Sbjct: 503 AKKSAISRRSLGIGVINFAYYLAKNKVRYSDGSAHNLTHKTFEAMQYYLLEASCELAKEK 562
Query: 570 GPYETYHNSPVSKGILQPDMWNVIPSD------RWDWGVLRDMISKNGVRNSLLVAPMPT 623
G ++++ G L D + D DW +LR I K G+RNS L A MP+
Sbjct: 563 GACSLFNHTNYYLGKLPIDTYKKYIDDICNEPLHLDWNLLRSKIKKYGLRNSTLSALMPS 622
Query: 624 ASTSQILGNNECFEPYTSNIYSRRVLSGEFVVVNKHLLHDLTEMGIWSPTIKNKIIYDDG 683
++SQI EP R +S + V+K DG
Sbjct: 623 ETSSQISNATNGIEP------PRGFIS---IKVSK-----------------------DG 650
Query: 684 SVQKIPEIPEELKMIYKTVWEIKQMT-LVDMAVDRGCYIDQSQSLNIHMDQPNF------ 736
++++ ++L++ Y+ +W+I T + +A +IDQS S+N H D F
Sbjct: 651 ILRQVVPEYKKLRLQYELLWDIPNNTGYLQLAGIMQKFIDQSISVNTHYDPARFLNNKIP 710
Query: 737 -KKVTSLHFRTWSRGLKTGMYYLRSRAAAD 765
K++ ++ GLKT +YY +R ++
Sbjct: 711 MKQLLYDLLLSYKLGLKT-LYYQNTRDGSE 739
>sp|P37426|RIR1_SALTY Ribonucleoside-diphosphate reductase 1 subunit alpha OS=Salmonella
typhimurium (strain LT2 / SGSC1412 / ATCC 700720)
GN=nrdA PE=3 SV=1
Length = 761
Score = 247 bits (631), Expect = 2e-64, Method: Compositional matrix adjust.
Identities = 221/806 (27%), Positives = 347/806 (43%), Gaps = 112/806 (13%)
Query: 1 MYVVKRDGRQEAVHFDKITARLKKLSYGLSTEHCDPVLVSQKVCAGVYKGVTTSQLDELA 60
+ V KRDGR E ++ DKI L + GL+ V + + Y G+ TS + E
Sbjct: 5 LLVTKRDGRTERINLDKIHRVLDWAAEGLNNVSVSQVELRSHI--QFYDGIKTSDIHETI 62
Query: 61 AETAAAMTT-NHPDYASLAARIAVSNLHKNTKKSFSETIKDMYNHYNE--RSGLKAPLIA 117
+ AA + + + PDY LAAR+A+ +L K F +Y+H + G +
Sbjct: 63 IKAAADLISRDAPDYQYLAARLAIFHLRKKAFGQFEPPA--LYHHVVKMVELGKYDNHLL 120
Query: 118 DDIYEIIMKNAACLDSEIIYDRDFDYDYFGFKTLERSYLL--KVQGKVVERPQHMLMRVS 175
+D E K +DS I++DRD + Y K LE YL+ +V G++ E Q + + V+
Sbjct: 121 EDYTEEEFKQ---MDSFIVHDRDMTFSYAAVKQLEGKYLVQNRVTGEIYESAQFLYILVA 177
Query: 176 IGIHKD-----DIDSAIKTYHMMSQRWFTHASPTLFNAGTPRPQLSSCFLV-CMKDDSIE 229
+ + +D + Y +S + +P + TP Q SSC L+ C DS++
Sbjct: 178 ACLFSNYPRETRLDYVKRFYDAVSTFKISLPTPIMSGVRTPTRQFSSCVLIEC--GDSLD 235
Query: 230 GIYETLKECAVISKSAGGIGVSVHNIRATGSYIRGTNGTSNGIVPMLRVFNDTARYVDQG 289
I T GIG++ IRA GS IRG G +P + F + QG
Sbjct: 236 SINATSSAIVKYVSQRAGIGINAGRIRALGSPIRGGEAFHTGCIPFYKHFQTAVKSCSQG 295
Query: 290 GGKRKGAFAVYLEPWHADIFEFLNLKKNHGKEEHRARDLFYALWVPDLFMERVQTNGQWS 349
G R GA ++ WH ++ L LK N G E +R R + Y + + L R+ G +
Sbjct: 296 G-VRGGAATLFYPMWHLEVESLLVLKNNRGVEGNRVRHMDYGVQINKLMYTRLLKGGDIT 354
Query: 350 LFCPNEASGLADCWGA---EFEKLYTHYEREGKAKKV-VQAQNLWFEILTSQIETGTPYM 405
LF P++ GL D + A EFE+LY YE + +K V+A L+ ++ + TG Y+
Sbjct: 355 LFSPSDVPGLYDAFFADQDEFERLYVKYEHDDSIRKQRVKAVELFSLMMQERASTGRIYI 414
Query: 406 LFKDTCNRKSN-QQNLGTIKSSNLCTEIIEYTSPT--------ETAVCNLASIALPRFVR 456
D CN S + ++ SNLC EI T P E A+C L++ L
Sbjct: 415 QNVDHCNTHSPFDPVVAPVRQSNLCLEIALPTKPLNDVNDENGEIALCTLSAFNL----- 469
Query: 457 EKDVPVESHPSRIVGSRGSKNRFFDFEKLAEVTAIVTENLNKIIDVNYYPVETARRSNLR 516
++L E+ + L+ ++D YP+ A+R +
Sbjct: 470 --------------------GAIKTLDELEELAILAVRALDALLDYQDYPIPAAKRGAMG 509
Query: 517 HRPIGIGVQGLADTFILLGMAFESPEAQQLNKDIFETIYYHALKTSSEIAAKEGPYETYH 576
R +GIGV A G + A L FE I Y+ LK S+E+A ++G ++
Sbjct: 510 RRTLGIGVINFAYWLAKNGKRYSDGSANNLTHKTFEAIQYYLLKASNELAKEQGACPWFN 569
Query: 577 NSPVSKGILQPDMWN------VIPSDRWDWGVLRDMISKNGVRNSLLVAPMPTASTSQIL 630
+ +KGIL D + V +DW LR+ I +G+RNS L A MP+ ++SQI
Sbjct: 570 ETTYAKGILPIDTYKKDLDAIVNEPLHYDWEQLRESIKTHGLRNSTLSALMPSETSSQIS 629
Query: 631 GNNECFEPYTSNIYSRRVLSGEFVVVNKHLLHDLTEMGIWSPTIKNKIIYDDGSVQKIPE 690
EP + +IK DG ++++
Sbjct: 630 NATNGIEPPRGYV-----------------------------SIKAS---KDGILRQVVP 657
Query: 691 IPEELKMIYKTVWEIKQ----MTLVDMAVDRGCYIDQSQSLNIHMDQPNF-------KKV 739
E LK Y+ +WE+ + LV + +IDQS S N + D F +++
Sbjct: 658 DYEHLKDAYELLWEMPNNDGYLQLVGIMQK---FIDQSISANTNYDPSRFPSGKVPMQQL 714
Query: 740 TSLHFRTWSRGLKTGMYYLRSRAAAD 765
+ G+KT +YY +R A+
Sbjct: 715 LKDLLTAYKFGVKT-LYYQNTRDGAE 739
>sp|P43754|RIR1_HAEIN Ribonucleoside-diphosphate reductase subunit alpha OS=Haemophilus
influenzae (strain ATCC 51907 / DSM 11121 / KW20 / Rd)
GN=nrdA PE=3 SV=1
Length = 756
Score = 244 bits (623), Expect = 2e-63, Method: Compositional matrix adjust.
Identities = 221/816 (27%), Positives = 355/816 (43%), Gaps = 118/816 (14%)
Query: 1 MYVVKRDGRQEAVHFDKITARLKKLSYGLSTEHCDPVLVSQ---KVCAGVYKGVTTSQLD 57
+ V KRDG QE ++ DKI + + GL D V VSQ + Y+G+ TS +
Sbjct: 5 LMVTKRDGTQEQINLDKIHRVITWAAEGL-----DNVSVSQVELRSHIQFYEGIRTSDIH 59
Query: 58 ELAAETAAAMTT-NHPDYASLAARIAVSNLHKNTKKSFSETIKDMYNHYNERSGLKA--P 114
E + AA + + + PDY LAAR+A+ +L K F +Y+H + ++
Sbjct: 60 ETIIKAAADLISKDSPDYQYLAARLAIFHLRKKAYGHFDPP--RLYDHVKKLVRMEKYDQ 117
Query: 115 LIADDIYEIIMKNAACLDSEIIYDRDFDYDYFGFKTLERSYLL--KVQGKVVERPQHMLM 172
+ DD + +D I + RD + Y K LE YL+ +V G++ E Q + +
Sbjct: 118 ALLDDY---TREEWDTMDGFIDHWRDMTFSYAAVKQLEGKYLVQNRVTGEIYESAQFLYL 174
Query: 173 RVSIGI-----HKDDIDSAIKTYHMMSQRWFTHASPTLFNAGTPRPQLSSCFLV-CMKDD 226
VS + + +D + Y S + +P + TP Q SSC L+ C DD
Sbjct: 175 LVSASLFSKYPKETRLDYVKRFYDATSTFKISLPTPIMAGVRTPTRQFSSCVLIEC--DD 232
Query: 227 SIEGIYETLKECAVISKSAGGIGVSVHNIRATGSYIRGTNGTSNGIVPMLRVFNDTARYV 286
S++ I T GIG++ IRA GS IRG G +P + F +
Sbjct: 233 SLDSINATASAIVKYVSQRAGIGINAGAIRALGSEIRGGEAFHTGCIPFYKYFQTAVKSC 292
Query: 287 DQGGGKRKGAFAVYLEPWHADIFEFLNLKKNHGKEEHRARDLFYALWVPDLFMERVQTNG 346
QGG R GA +Y WH + L LK N G E++R R + Y + + L +R+
Sbjct: 293 SQGG-VRGGAATLYYPIWHLEAENLLVLKNNRGVEDNRVRHMDYGVQLNKLMYQRLIKGS 351
Query: 347 QWSLFCPNEASGLADCWGAE---FEKLYTHYEREGKAKK-VVQAQNLWFEILTSQIETGT 402
+ +LF P++ GL + + A+ FE+LY YE++ +K V+A ++ ++ + TG
Sbjct: 352 EITLFSPSDVPGLYEAFFADQDKFEELYVKYEQDPTIRKRTVKAVEIFSLLMQERASTGR 411
Query: 403 PYMLFKDTCNRKSN-QQNLGTIKSSNLCTEIIEYTSPT--------ETAVCNLASIALPR 453
Y+ D CN S + ++ SNLC EI T P E A+C L++ L
Sbjct: 412 IYIQNVDHCNTHSPFDPQVAPVRQSNLCLEIALPTKPLQHINDENGEIALCTLSAFNL-- 469
Query: 454 FVREKDVPVESHPSRIVGSRGSKNRFFDFEKLAEVTAIVTENLNKIIDVNYYPVETARRS 513
+ + ++L E+ + +L+ ++D YPV A+RS
Sbjct: 470 -----------------------GKIENLDELEELADLAVRSLDALLDYQDYPVVAAKRS 506
Query: 514 NLRHRPIGIGVQGLADTFILLGMAFESPEAQQLNKDIFETIYYHALKTSSEIAAKEGPYE 573
+L R +GIGV A G+ + A L FE I Y+ LK S +A ++G E
Sbjct: 507 SLARRSLGIGVINYAYYLAKNGVRYSDGSANDLTHRTFEAIQYYLLKASMNLAKEQGACE 566
Query: 574 TYHNSPVSKGILQPDMWN------VIPSDRWDWGVLRDMISKNGVRNSLLVAPMPTASTS 627
++ + +KGIL D + +DW LR I + G+RNS L A MP+ ++S
Sbjct: 567 YFNETTYAKGILPIDTYKKDLDSLTQEPLHYDWESLRKDIQEFGLRNSTLTALMPSETSS 626
Query: 628 QILGNNECFEPYTSNIYSRRVLSGEFVVVNKHLLHDLTEMGIWSPTIKNKIIYDDGSVQK 687
QI EP ++ +IK DG +++
Sbjct: 627 QISNATNGIEPPRGHV-----------------------------SIKAS---KDGILKQ 654
Query: 688 IPEIPEELKMIYKTVWEIKQ----MTLVDMAVDRGCYIDQSQSLNIHMDQPNF------- 736
+ E L Y+ +W+I + LV + ++DQ+ S N + D F
Sbjct: 655 VVPEYENLMDNYELLWDIPSNDGYLHLVGIMQK---FVDQAISANTNYDPKRFEDGKVPM 711
Query: 737 KKVTSLHFRTWSRGLKTGMYYLRSRAAADAIKFTVD 772
K + + GLKT +YY +R A+ ++ +D
Sbjct: 712 KVLLKDLLTAYKYGLKT-LYYQNTRDGAEDVQEDLD 746
Database: swissprot
Posted date: Mar 23, 2013 2:32 AM
Number of letters in database: 191,569,459
Number of sequences in database: 539,616
Lambda K H
0.319 0.134 0.400
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 302,356,801
Number of Sequences: 539616
Number of extensions: 13042058
Number of successful extensions: 29837
Number of sequences better than 100.0: 50
Number of HSP's better than 100.0 without gapping: 89
Number of HSP's successfully gapped in prelim test: 18
Number of HSP's that attempted gapping in prelim test: 29226
Number of HSP's gapped (non-prelim): 148
length of query: 811
length of database: 191,569,459
effective HSP length: 126
effective length of query: 685
effective length of database: 123,577,843
effective search space: 84650822455
effective search space used: 84650822455
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 66 (30.0 bits)