Query 003561
Match_columns 811
No_of_seqs 255 out of 1652
Neff 6.7
Searched_HMMs 46136
Date Fri Mar 29 01:46:18 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/003561.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/003561hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG1112 Ribonucleotide reducta 100.0 4E-238 9E-243 1883.0 54.4 792 1-811 1-796 (796)
2 PLN02437 ribonucleoside--dipho 100.0 2E-207 4E-212 1827.0 76.8 811 1-811 1-813 (813)
3 PRK06539 ribonucleotide-diphos 100.0 2E-197 5E-202 1739.0 73.0 781 1-810 3-822 (822)
4 PRK07207 ribonucleotide-diphos 100.0 1E-197 2E-202 1767.6 69.4 782 1-810 149-965 (965)
5 PRK12365 ribonucleotide-diphos 100.0 2E-195 5E-200 1764.5 72.0 778 1-810 236-1046(1046)
6 PRK08447 ribonucleotide-diphos 100.0 2E-184 5E-189 1616.5 66.2 697 1-766 2-774 (789)
7 PHA02572 nrdA ribonucleoside-d 100.0 5E-182 1E-186 1597.9 64.9 701 1-772 4-741 (753)
8 PRK07088 ribonucleotide-diphos 100.0 2E-181 3E-186 1593.4 64.6 693 1-763 3-754 (764)
9 PRK09103 ribonucleotide-diphos 100.0 8E-181 2E-185 1586.1 63.1 707 1-773 2-744 (758)
10 PRK09209 ribonucleotide-diphos 100.0 1E-180 3E-185 1587.3 63.4 695 2-763 11-751 (761)
11 PRK12364 ribonucleotide-diphos 100.0 1E-175 2E-180 1566.7 64.2 665 34-763 126-832 (842)
12 PRK07187 ribonucleotide-diphos 100.0 6E-158 1E-162 1385.4 55.1 623 72-764 26-698 (721)
13 PRK07632 ribonucleotide-diphos 100.0 7E-157 2E-161 1372.5 50.7 575 127-764 72-690 (699)
14 TIGR02506 NrdE_NrdA ribonucleo 100.0 2E-153 5E-158 1346.2 55.5 595 145-761 1-617 (617)
15 PRK08188 ribonucleotide-diphos 100.0 9E-153 2E-157 1338.7 53.9 589 113-766 69-702 (714)
16 PRK06406 ribonucleotide-diphos 100.0 3E-151 6E-156 1335.3 63.0 650 2-766 6-724 (771)
17 PRK07306 ribonucleotide-diphos 100.0 8E-152 2E-156 1335.9 51.1 586 113-764 63-706 (720)
18 PRK09102 ribonucleotide-diphos 100.0 4E-145 8E-150 1261.4 52.7 552 131-770 9-576 (601)
19 PRK08665 ribonucleotide-diphos 100.0 1E-141 3E-146 1259.5 55.0 553 137-766 6-570 (752)
20 PRK08115 ribonucleotide-diphos 100.0 8E-142 2E-146 1247.0 49.9 566 162-769 125-779 (858)
21 TIGR02504 NrdJ_Z ribonucleosid 100.0 6E-140 1E-144 1227.3 53.1 564 151-758 2-577 (586)
22 PRK06948 ribonucleotide reduct 100.0 2E-136 4E-141 1190.5 51.1 564 138-764 7-585 (595)
23 TIGR02510 NrdE-prime ribonucle 100.0 5E-136 1E-140 1178.9 46.0 525 137-766 12-557 (571)
24 PF02867 Ribonuc_red_lgC: Ribo 100.0 2E-135 4E-140 1181.9 45.6 525 215-758 1-538 (538)
25 PRK06556 vitamin B12-dependent 100.0 6E-134 1E-138 1199.7 53.2 586 138-770 53-702 (953)
26 cd01679 RNR_I Class I ribonucl 100.0 3E-127 6E-132 1086.5 43.6 454 167-760 1-460 (460)
27 PRK08332 ribonucleotide-diphos 100.0 4E-125 1E-129 1161.7 63.1 473 250-762 758-1612(1740)
28 cd02888 RNR_II_dimer Class II 100.0 7E-127 2E-131 1085.0 43.5 459 187-758 2-462 (464)
29 COG0209 NrdA Ribonucleotide re 100.0 2E-124 4E-129 1107.5 53.5 623 42-771 4-645 (651)
30 PRK07562 ribonucleotide-diphos 100.0 2E-122 5E-127 1100.6 52.6 558 165-768 103-924 (1220)
31 cd01676 RNR_II_monomer Class I 100.0 6.2E-84 1.3E-88 753.0 35.7 494 150-777 4-624 (658)
32 TIGR02505 RTPR ribonucleoside- 100.0 1.1E-70 2.3E-75 642.5 28.5 480 144-750 9-640 (713)
33 cd00576 RNR_PFL Ribonucleotide 100.0 1E-48 2.3E-53 441.1 23.2 372 186-757 1-400 (401)
34 PF00317 Ribonuc_red_lgN: Ribo 99.7 2.3E-18 5E-23 152.0 6.0 72 142-213 2-83 (83)
35 PF03477 ATP-cone: ATP cone do 99.3 4.7E-12 1E-16 113.4 9.1 85 1-89 1-90 (90)
36 PRK08270 anaerobic ribonucleos 99.1 7.6E-08 1.6E-12 114.8 33.6 247 390-748 345-613 (656)
37 PRK09263 anaerobic ribonucleos 99.1 4.9E-07 1.1E-11 108.8 38.0 160 386-571 347-537 (711)
38 PRK07111 anaerobic ribonucleos 98.9 2.1E-06 4.6E-11 103.8 32.9 260 385-752 378-672 (735)
39 PRK00464 nrdR transcriptional 97.8 1.8E-05 3.9E-10 77.7 4.7 77 1-79 49-129 (154)
40 cd01675 RNR_III Class III ribo 97.8 0.0011 2.3E-08 78.6 19.2 254 386-752 228-510 (555)
41 PRK10977 hypothetical protein; 97.5 0.0057 1.2E-07 71.4 19.9 257 385-777 190-468 (509)
42 TIGR02487 NrdD anaerobic ribon 97.4 0.0075 1.6E-07 71.9 20.1 251 388-750 233-514 (579)
43 PRK14704 anaerobic ribonucleos 97.4 0.011 2.3E-07 70.8 19.9 259 385-752 259-551 (618)
44 TIGR00244 transcriptional regu 97.3 0.00054 1.2E-08 66.2 6.4 72 2-78 50-128 (147)
45 PF13597 NRDD: Anaerobic ribon 97.1 0.0075 1.6E-07 71.4 15.2 241 385-748 224-478 (546)
46 PRK08579 anaerobic ribonucleos 96.9 0.042 9.1E-07 65.8 18.5 106 441-562 333-457 (625)
47 COG1327 Predicted transcriptio 96.8 0.0028 6E-08 61.3 6.4 72 2-78 50-128 (156)
48 PRK08271 anaerobic ribonucleos 95.6 0.041 8.9E-07 65.8 9.4 107 440-563 347-461 (623)
49 PRK07207 ribonucleotide-diphos 95.5 0.04 8.7E-07 69.1 9.2 64 1-64 34-111 (965)
50 TIGR02827 RNR_anaer_Bdell anae 94.8 0.38 8.2E-06 57.3 14.0 108 439-571 319-431 (586)
51 PRK12365 ribonucleotide-diphos 94.5 0.089 1.9E-06 66.8 8.3 64 1-64 9-88 (1046)
52 PF11230 DUF3029: Protein of u 90.0 7.5 0.00016 44.5 14.8 264 382-778 173-457 (487)
53 COG1328 NrdD Oxygen-sensitive 73.3 8 0.00017 47.2 7.1 61 2-65 4-71 (700)
54 PF04282 DUF438: Family of unk 59.2 21 0.00047 30.7 5.1 43 14-61 14-56 (71)
55 COG1328 NrdD Oxygen-sensitive 49.2 55 0.0012 40.2 8.2 45 516-560 480-526 (700)
56 COG2099 CobK Precorrin-6x redu 39.5 32 0.00069 36.9 3.8 81 522-618 53-134 (257)
57 PF03847 TFIID_20kDa: Transcri 36.6 77 0.0017 27.1 5.0 32 540-571 19-50 (68)
58 PRK15329 chaperone protein Sic 34.2 46 0.00099 32.4 3.6 29 383-411 57-88 (138)
59 cd07981 TAF12 TATA Binding Pro 31.8 99 0.0021 26.5 5.0 33 539-571 20-52 (72)
60 PF14698 ASL_C2: Argininosucci 22.3 1.2E+02 0.0026 25.9 3.8 15 524-538 4-18 (70)
No 1
>KOG1112 consensus Ribonucleotide reductase, alpha subunit [Nucleotide transport and metabolism]
Probab=100.00 E-value=4.2e-238 Score=1882.98 Aligned_cols=792 Identities=73% Similarity=1.212 Sum_probs=772.2
Q ss_pred CeEEecCCceeecChHHHHHHHHHHHccCCCCCCCHHHHHHHHHhhcCCCCCHHHHHHHHHHHHHhhccCCCChHHHHHH
Q 003561 1 MYVVKRDGRQEAVHFDKITARLKKLSYGLSTEHCDPVLVSQKVCAGVYKGVTTSQLDELAAETAAAMTTNHPDYASLAAR 80 (811)
Q Consensus 1 ~~V~KrdG~~e~~~~~ki~~~i~~~~~~l~~~~v~~~~i~~~~~~~l~~gitt~ei~~~~~~~a~~~~~~~p~y~~lA~r 80 (811)
|+|+|||||+|++.+|||+.+|+++|+||++++|||.+|.++|++++|.||||.|++++++|+|+.|++.||||..||+|
T Consensus 1 myv~krdgr~E~v~fDkItsRi~~l~ygL~~d~vD~v~vt~kvisG~y~gvTt~eldnlaaEtaA~mtt~HPdYa~laaR 80 (796)
T KOG1112|consen 1 MYVVKRDGRQEKVHFDKITSRIQKLSYGLDMDHVDPVEVTQKVISGVYEGVTTVELDNLAAETAASMTTKHPDYAILAAR 80 (796)
T ss_pred CcccccccccccccHhHHHHHHHHHhcCCCccccCHHHHHHHHHhhhcCCchhHhHHHHHHHHHHHhhcCCccHHHHHHH
Confidence 78999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHhhhhhhHHHHHHHHhhhhccCCcccCcChHHHHHHHhcHHHHHHhhcccccCCCChhhHHHHHHhhccccC
Q 003561 81 IAVSNLHKNTKKSFSETIKDMYNHYNERSGLKAPLIADDIYEIIMKNAACLDSEIIYDRDFDYDYFGFKTLERSYLLKVQ 160 (811)
Q Consensus 81 l~~~~l~k~~~~~~~~~~~~l~~~~~~~~~~~~~l~~~~~~~~~~~~~~~l~~~i~~~rd~~~~y~g~~~l~~~Yl~k~~ 160 (811)
|.+++|||++.+.|++++++||+|+++++|...+|+++++|+.+.+|.+.|++.|.|+|||.|+|||+++|+++||+|.+
T Consensus 81 IavSnlHk~T~k~Fs~vi~~l~~~vn~~tgk~apmisd~~y~Iv~~n~d~lnsaIiYdrDf~y~yFGfkTLerSYLlkin 160 (796)
T KOG1112|consen 81 IAVSNLHKQTKKVFSEVIEDLHNHVNPHTGKHAPMISDEVYNIVMENKDRLNSAIIYDRDFSYNYFGFKTLERSYLLKIN 160 (796)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhcCcccCCcCCcccHHHHHHHHhhhhhhccceeeccccceeecchhHHHHHHHHHhC
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CcccCCHHHHHHHHHhHhccCCHHHHHHHHHHHhcCcEecccccccccCCCCCCCCccccccccCCCHHHHHHHHHHHHH
Q 003561 161 GKVVERPQHMLMRVSIGIHKDDIDSAIKTYHMMSQRWFTHASPTLFNAGTPRPQLSSCFLVCMKDDSIEGIYETLKECAV 240 (811)
Q Consensus 161 g~~~E~pq~~~~RvA~~l~~~~~~~~~~~y~~ls~~~~~~atP~l~naGt~~~~lsSCfl~~~~~Ds~~~I~~~~~~~a~ 240 (811)
|++.|+||||+||||.+||++|++.|++.|++||.++|+|||||||||||+++|||||||+.+.+||++|||+++++||+
T Consensus 161 g~v~ERPQhm~MRVa~gIH~~Die~aietYnLmS~ryfTHAsPTLfnagt~rPQlsSCFL~tmk~DSIeGiydtlkqcA~ 240 (796)
T KOG1112|consen 161 GEVAERPQHMLMRVALGIHGEDIEAAIETYNLMSERYFTHASPTLFNAGTPRPQLSSCFLLTMKDDSIEGIYDTLKQCAM 240 (796)
T ss_pred CchhcChHhHhHHhhhccchhhHHHHHHHHHHhhhhhhccCCchhhhcCCCCccccceEEEEecccchHHHHHHHHHhhh
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHhcCCcceeeceecCCCCcccCCCCccCCcccHHHHHHHHHHHHhhCCCccccceEeeccCCcccHHHHHHhhhcCCc
Q 003561 241 ISKSAGGIGVSVHNIRATGSYIRGTNGTSNGIVPMLRVFNDTARYVDQGGGKRKGAFAVYLEPWHADIFEFLNLKKNHGK 320 (811)
Q Consensus 241 isk~ggGvG~~~s~iR~~Gs~I~g~~g~ssG~vp~lk~~~~~~~~v~QgG~~R~ga~~vyl~~wH~DI~~Fl~~K~~~g~ 320 (811)
|||.+||||+++++||++||.|+|++|+|+|+||++++||+++++|+|||++|+||+++||++||.||++||++|+|+|+
T Consensus 241 IsKsaGGIGl~vh~IRatGs~i~gTnGtSNGliPmirV~NntaRYvdQGg~kRpGafAiyLEPWHadifdFlelrKn~G~ 320 (796)
T KOG1112|consen 241 ISKSAGGIGLNVHNIRATGSYIAGTNGTSNGLIPMIRVFNNTARYVDQGGNKRPGAFAIYLEPWHADIFDFLELRKNTGK 320 (796)
T ss_pred hhhccCcceEEEeeeeccCcEEecCCCCCCCccchhhhhcchhhHhhcCCCCCCceeEEEechhHHHHHHHHHHHhccCh
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ccccccccceecccCHHHHHHHHcCCceEEecCCCCCcchhhhhhHHHHHHHHHHhcCceeEEEeHHHHHHHHHHHHHhh
Q 003561 321 EEHRARDLFYALWVPDLFMERVQTNGQWSLFCPNEASGLADCWGAEFEKLYTHYEREGKAKKVVQAQNLWFEILTSQIET 400 (811)
Q Consensus 321 e~~r~~~l~~sv~ipD~Fm~rv~~~~~W~Lf~P~~~~~L~~~yg~eF~~~Y~~~e~~~~~~~~v~Ar~L~~~I~~~~~et 400 (811)
|+.|+|++|+++||||+||+||++|++|+||||++||||.|+||+||+.+|.+||++|..+++|+|++||..|+++|.||
T Consensus 321 Ee~RARdlF~ALWipDLFMkRVe~n~~WslfcP~~apGL~dvwG~EFe~LY~kYEkegr~~k~vkAqklW~aIleaQ~ET 400 (796)
T KOG1112|consen 321 EEFRARDLFYALWIPDLFMKRVENNGEWSLFCPNEAPGLDDVWGDEFEALYTKYEKEGRGKKTVKAQKLWYAILEAQVET 400 (796)
T ss_pred HHHHHHHHHHHHhhhHHHHHHHhcCCceEEECCccCCchHHHHhHHHHHHHHHHHHhccccceeeHHHHHHHHHHHhhcc
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCceeEehhhhhhhcCCCCCCceeeecCCccccccCCCCcceeEEecccccchhcccCCCCCCCCCccccccCCCCCccC
Q 003561 401 GTPYMLFKDTCNRKSNQQNLGTIKSSNLCTEIIEYTSPTETAVCNLASIALPRFVREKDVPVESHPSRIVGSRGSKNRFF 480 (811)
Q Consensus 401 G~P~i~f~D~~Nr~~~~~~~g~I~~sNlC~EI~~~~~~~e~~~CNL~SInL~~~v~~~~~~~~~~~~~~~g~~~~~~~~f 480 (811)
|.|||+|||+|||++||+|+|+|+|||||+||+.|++|+|++||||+||.|+.||.. +..|
T Consensus 401 GtPym~yKDacNRkSNQqnlGtIk~SNLCtEIvEYsspdE~aVCNLASiaLp~fv~~-------------------~~~y 461 (796)
T KOG1112|consen 401 GTPYMLYKDACNRKSNQQNLGTIKSSNLCTEIVEYSSPDETAVCNLASIALPMFVTP-------------------EKTY 461 (796)
T ss_pred CCceEEehhhhcccccccccceeeecchhHHHhhccCCcceeeeehHhhhhhhhccc-------------------cccc
Confidence 999999999999999999999999999999999999999999999999999999974 4579
Q ss_pred CHHHHHHHHHHHHHHHHHHHhcCCCcHHHHHHHhhccCCeeeecchHHHHHHHcCCCCCCHHHHHHHHHHHHHHHHHHHH
Q 003561 481 DFEKLAEVTAIVTENLNKIIDVNYYPVETARRSNLRHRPIGIGVQGLADTFILLGMAFESPEAQQLNKDIFETIYYHALK 560 (811)
Q Consensus 481 D~~~L~~~v~~avr~LD~vId~~~~p~~~~~~~~~~~R~iGlGv~Glad~L~~~gi~y~S~ea~~l~~~i~e~i~~~a~~ 560 (811)
||++|++++++++|+|+.+||+|+||+|+|+++|+++||||||||||||+|+.|++||+|+||+.|+.+|||+|||+|++
T Consensus 462 dF~kl~ev~kvvt~NLNkiID~NYYPv~eAr~SNmrhRPigiGVQGlAD~f~llr~pfeS~eA~~LN~qIFEtiYy~ale 541 (796)
T KOG1112|consen 462 DFEKLAEVTKVVTRNLNKIIDVNYYPVEEARRSNMRHRPIGIGVQGLADAFILLRLPFESAEARLLNKQIFETIYYAALE 541 (796)
T ss_pred cHHHHHHHHHHHHhhhhheeccCcccchHhhhcccccCCccccchhHHHHHHHHcCCCCChHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHhCCCCCCCCCccccCCCCccccccCCCCcccHHHHHHHHHhcCccccceeccCCCCccccccCCCccccccc
Q 003561 561 TSSEIAAKEGPYETYHNSPVSKGILQPDMWNVIPSDRWDWGVLRDMISKNGVRNSLLVAPMPTASTSQILGNNECFEPYT 640 (811)
Q Consensus 561 aS~eLAke~G~~~~f~~S~~~~G~l~~d~~~~~~~~~~dW~~Lr~~i~~~G~RNs~l~AiaPT~stS~i~g~s~gieP~~ 640 (811)
||+|||+..|||+.|+|||.|+|+||||+|+++|++.|||+.||++|++||+|||.++|.|||+|||||+|++++|||+.
T Consensus 542 AScelA~~eGpyetyeGSPvSkGilq~dmw~~~pt~~wDW~~Lre~I~khGvRNSLl~ApMPTAsTsQIlGnNE~fEP~t 621 (796)
T KOG1112|consen 542 ASCELAQKEGPYETYEGSPVSKGILQFDMWNVKPTDLWDWATLREKIAKHGVRNSLLVAPMPTASTSQILGNNECFEPYT 621 (796)
T ss_pred HhHHHHHhcCCCcccCCCcccccccchhhcCCCCCcccCHHHHHHHHHHhccccceeeccCCCcchhhhhcCccccCccc
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cceeEEEcccCceEEeChHHHHHHHHcCCCcHHHhhhhhccCCcccccCCCchHHHhhhhhhccCChHHHHHHHHHhccc
Q 003561 641 SNIYSRRVLSGEFVVVNKHLLHDLTEMGIWSPTIKNKIIYDDGSVQKIPEIPEELKMIYKTVWEIKQMTLVDMAVDRGCY 720 (811)
Q Consensus 641 s~~y~r~~~~g~~~~vn~~l~~~l~~~g~~~~~~~~~i~~~~Gsv~~i~~~p~~~k~~f~ta~ei~~~~~i~~~a~~Q~~ 720 (811)
+|+|+||+++|||++||+||+++|.++|+|+++||+.++..+||+|++|++|+++|++|||+|||+|+.+|+|||+|+.|
T Consensus 622 sNiYsRRvlsGeFqiVN~hll~DLv~~glW~~~mKn~lI~~nGSIq~i~~iP~~lk~lYkTvWEIsqktvi~mAAdRg~~ 701 (796)
T KOG1112|consen 622 SNIYSRRVLSGEFQIVNPHLLKDLVELGLWDDEMKNKLIANNGSIQNIPEIPQDLKELYKTVWEISQKTVIDMAADRGAF 701 (796)
T ss_pred ccceeeeecccceEEEcHHHHHHHHHhccCCHHHHHHHHhcCCccccCccCCHHHHHHHHHHHHHHHHHHHHHHhhcccc
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cccccceeEeeCCCCHHHHHHHHHHHHHcCCceEEEEecCccccccccccccccccccCCCCCc-cc---cccccccccc
Q 003561 721 IDQSQSLNIHMDQPNFKKVTSLHFRTWSRGLKTGMYYLRSRAAADAIKFTVDTSVFKEKPEKPE-LV---VDDETKMAQV 796 (811)
Q Consensus 721 vDqs~S~~l~~~~~~~~~l~~~~~~Awk~GlKt~~YY~r~~~~~~~~~~~~~~~~~~~~~~~~~-~~---~~~~~~~~~~ 796 (811)
||||||+||++..+++++|.++|+|.||+||||||||||+++++++++||||++.+...+.... .+ .....+...+
T Consensus 702 iDQSqSlNi~~~~P~y~klTSmHFYgwkkGLKTGMYYLRt~~a~~aIqFTvdk~~~~~~~~~~~~~~~~~e~~~~~~~~~ 781 (796)
T KOG1112|consen 702 IDQSQSLNIHLAKPNYGKLTSMHFYGWKKGLKTGMYYLRTRPAANAIQFTVDKKVLNEKAEVAEGDSKEEEEDEYNTAVM 781 (796)
T ss_pred cccccceeeeecCCCccccceeEeeehhcccccceeEEeccccccceEEEecHHHhcccccccccchhhhHHhhhhhhhh
Confidence 9999999999999999999999999999999999999999999999999999977554211110 00 1112256678
Q ss_pred ccccCCccccccCCC
Q 003561 797 VCSLTNREECMACGS 811 (811)
Q Consensus 797 ~~~~~~~~~c~~c~~ 811 (811)
+|+++++|.|++||+
T Consensus 782 ~c~~~n~e~C~mCss 796 (796)
T KOG1112|consen 782 VCSLDNPEACLMCSS 796 (796)
T ss_pred hhccCCchHhhhcCC
Confidence 999999999999996
No 2
>PLN02437 ribonucleoside--diphosphate reductase large subunit
Probab=100.00 E-value=1.7e-207 Score=1827.01 Aligned_cols=811 Identities=89% Similarity=1.387 Sum_probs=769.2
Q ss_pred CeEEecCCceeecChHHHHHHHHHHHccCCCCCCCHHHHHHHHHhhcCCCCCHHHHHHHHHHHHHhhccCCCChHHHHHH
Q 003561 1 MYVVKRDGRQEAVHFDKITARLKKLSYGLSTEHCDPVLVSQKVCAGVYKGVTTSQLDELAAETAAAMTTNHPDYASLAAR 80 (811)
Q Consensus 1 ~~V~KrdG~~e~~~~~ki~~~i~~~~~~l~~~~v~~~~i~~~~~~~l~~gitt~ei~~~~~~~a~~~~~~~p~y~~lA~r 80 (811)
|+|+||||+.|+|+++||+++|+++|+||+.+.+|+..++.++..++++||||+||+++++++|+++++.||||++||||
T Consensus 1 ~~v~k~~g~~~~~~~~k~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~t~~el~~~~~~~a~~~~~~~p~y~~~Aar 80 (813)
T PLN02437 1 MYVVKRDGRQETVHFDKITARLKKLSYGLSQDHCDPVLVAQKVCAGVYKGVTTSQLDELAAETAAAMTTNHPDYAILAAR 80 (813)
T ss_pred CeEEEeCCceeecCHHHHHHHHHHHhcCCCCCCCCHHHHHHHHHhhccCCCCHHHHHHHHHHHHHHhcccCCcHHHHHHH
Confidence 68999999999999999999999999999877899999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHhhhhhhHHHHHHHHhhhhccCCcccCcChHHHHHHHhcHHHHHHhhcccccCCCChhhHHHHHHhhccccC
Q 003561 81 IAVSNLHKNTKKSFSETIKDMYNHYNERSGLKAPLIADDIYEIIMKNAACLDSEIIYDRDFDYDYFGFKTLERSYLLKVQ 160 (811)
Q Consensus 81 l~~~~l~k~~~~~~~~~~~~l~~~~~~~~~~~~~l~~~~~~~~~~~~~~~l~~~i~~~rd~~~~y~g~~~l~~~Yl~k~~ 160 (811)
|++.+|||++.+.|.+.+..++.++...+|...+++++++++++.+|+++|++.|+++||+.|+|+|+++|+++||+|.+
T Consensus 81 l~~~~l~k~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~i~~~rD~~~~y~g~~~l~~rYllk~~ 160 (813)
T PLN02437 81 IAVSNLHKNTKKSFSETVKDMYNHVNERSGLKAPLIADDVYDIIMKNAARLDSEIIYDRDFDYDYFGFKTLERSYLLKVN 160 (813)
T ss_pred HHHHHHHHHHHhhhhhHHHHHHHHHHHhcccchhhcCHHHHHHHHHHHHHHHHHhCcccccCCCHHHHHHHHHhheecCC
Confidence 99999999999999988899998877667888899999999999999999999999999999999999999999999977
Q ss_pred CcccCCHHHHHHHHHhHhccCCHHHHHHHHHHHhcCcEecccccccccCCCCCCCCccccccccCCCHHHHHHHHHHHHH
Q 003561 161 GKVVERPQHMLMRVSIGIHKDDIDSAIKTYHMMSQRWFTHASPTLFNAGTPRPQLSSCFLVCMKDDSIEGIYETLKECAV 240 (811)
Q Consensus 161 g~~~E~pq~~~~RvA~~l~~~~~~~~~~~y~~ls~~~~~~atP~l~naGt~~~~lsSCfl~~~~~Ds~~~I~~~~~~~a~ 240 (811)
|.++|+||+||||||++|+.++++++++||++||+++|+||||||+||||+++|||||||+++.+||++||+++++++++
T Consensus 161 ~~~~E~pq~~~mRVA~~l~~~~~~~a~~~Y~~ls~~~f~~aTPtL~naGt~~~qlsSCFl~~~~~Dsl~~I~~~~~~~a~ 240 (813)
T PLN02437 161 GKVVERPQHMLMRVSVGIHKDDIESAIKTYHLMSQRWFTHASPTLFNAGTPRPQLSSCFLICMKDDSIEGIYDTLKECAV 240 (813)
T ss_pred CCcccCHHHHHHHHHHHHcccCHHHHHHHHHHHHcCCcccCCchhhcCCCCCCCcceeeecCCCcchHHHHHHHHHHHHH
Confidence 88899999999999999999899999999999999999999999999999999999999998778999999999999999
Q ss_pred HHHhcCCcceeeceecCCCCcccCCCCccCCcccHHHHHHHHHHHHhhCCCccccceEeeccCCcccHHHHHHhhhcCCc
Q 003561 241 ISKSAGGIGVSVHNIRATGSYIRGTNGTSNGIVPMLRVFNDTARYVDQGGGKRKGAFAVYLEPWHADIFEFLNLKKNHGK 320 (811)
Q Consensus 241 isk~ggGvG~~~s~iR~~Gs~I~g~~g~ssG~vp~lk~~~~~~~~v~QgG~~R~ga~~vyl~~wH~DI~~Fl~~K~~~g~ 320 (811)
++|+|||||+++|+|||+|++|+|++|+|+|+|||||+||+++.+|+|||++||||+|+||++|||||++||++|+++|+
T Consensus 241 isk~gGGiG~~~s~iR~~Gs~I~g~~g~ssG~vpflk~~n~~~~~v~QgGg~RrGA~~vyL~~wH~DI~eFL~lK~~~g~ 320 (813)
T PLN02437 241 ISKSAGGIGLSVHNIRATGSYIRGTNGTSNGIVPMLRVFNDTARYVDQGGGKRKGAFAIYLEPWHADIFEFLDLRKNHGK 320 (813)
T ss_pred HHhcCCeEeecccccCCCCCcccCCCCCCCCchhHHHHHHHHHHHHHcCCCccccceeEEEeCCCccHHHHHHHhcccCc
Confidence 99999999999999999999999999999999999999999999999997699999999999999999999999999999
Q ss_pred ccccccccceecccCHHHHHHHHcCCceEEecCCCCCcchhhhhhHHHHHHHHHHhcCceeEEEeHHHHHHHHHHHHHhh
Q 003561 321 EEHRARDLFYALWVPDLFMERVQTNGQWSLFCPNEASGLADCWGAEFEKLYTHYEREGKAKKVVQAQNLWFEILTSQIET 400 (811)
Q Consensus 321 e~~r~~~l~~sv~ipD~Fm~rv~~~~~W~Lf~P~~~~~L~~~yg~eF~~~Y~~~e~~~~~~~~v~Ar~L~~~I~~~~~et 400 (811)
+++|++++|+||||||+||+||++|++|+||+|+++|+|.+.||++|+++|++||++|+.+++|+||+||++|++++|+|
T Consensus 321 e~~r~~~l~~sv~ipDlFM~rv~~d~~W~Lf~P~e~~~L~~~yG~eF~~~Y~~~e~~g~~~~~V~AreLw~~I~~s~~eT 400 (813)
T PLN02437 321 EEHRARDLFYALWIPDLFMERVQSNGDWSLFCPNEAPGLADCWGEEFERLYTKYEREGKAKKVVQAQQLWFAILESQIET 400 (813)
T ss_pred HhHHHHhcceeEEECHHHHHHHHcCCCEEEECCcccchHHHhhchHHHHHHHHHHhcCceeEEEEHHHHHHHHHHHHHHh
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCceeEehhhhhhhcCCCCCCceeeecCCccccccCCCCcceeEEecccccchhcccCCCCCCCCCccccccCCCCCccC
Q 003561 401 GTPYMLFKDTCNRKSNQQNLGTIKSSNLCTEIIEYTSPTETAVCNLASIALPRFVREKDVPVESHPSRIVGSRGSKNRFF 480 (811)
Q Consensus 401 G~P~i~f~D~~Nr~~~~~~~g~I~~sNlC~EI~~~~~~~e~~~CNL~SInL~~~v~~~~~~~~~~~~~~~g~~~~~~~~f 480 (811)
|+|||+|+|++|++||++|.|+|++||||+||+||++|+++++|||+||||++||.+++...++|...++++.++....|
T Consensus 401 G~P~i~fkD~~N~~~~~~~~G~I~~SNlCtEI~~~~~~~e~avCNL~SINL~~~v~~~~~~~~~~~~~~~~~~~~~~~~f 480 (813)
T PLN02437 401 GTPYMLFKDSCNRKSNQQNLGTIKSSNLCTEIIEYTSPTETAVCNLASIALPRFVREKGVPLESHPSKLVGSLGSKNRYF 480 (813)
T ss_pred CCCeEEEhHHHhhcCCCccCCceEeecccccccccCCccceeeeecchhhHHHHHhcccccccccccccccccccccccC
Confidence 99999999999999999999999999999999999999999999999999999996533333445555666665666789
Q ss_pred CHHHHHHHHHHHHHHHHHHHhcCCCcHHHHHHHhhccCCeeeecchHHHHHHHcCCCCCCHHHHHHHHHHHHHHHHHHHH
Q 003561 481 DFEKLAEVTAIVTENLNKIIDVNYYPVETARRSNLRHRPIGIGVQGLADTFILLGMAFESPEAQQLNKDIFETIYYHALK 560 (811)
Q Consensus 481 D~~~L~~~v~~avr~LD~vId~~~~p~~~~~~~~~~~R~iGlGv~Glad~L~~~gi~y~S~ea~~l~~~i~e~i~~~a~~ 560 (811)
||+.|+++|+++||+||+|||.+.||+|+++++|+++|+||||||||||+|+++|++|+|+||++|+++|||+|+|+|++
T Consensus 481 D~~~L~~~v~~avr~LDnvID~n~yP~~~a~~~n~~~R~IGLGv~Glad~L~~lgi~Y~S~ea~~l~~~I~e~i~~~A~~ 560 (813)
T PLN02437 481 DFEKLAEVTAVVTRNLNKIIDVNYYPVETARRSNMRHRPIGIGVQGLADAFILLGMPFDSPEAQQLNKDIFETIYYHALK 560 (813)
T ss_pred CHHHHHHHHHHHHHHHHHHHHccCCchHHHHHHhhcCCCccccHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHhCCCCCCCCCccccCCCCccccccCCCCcccHHHHHHHHHhcCccccceeccCCCCccccccCCCccccccc
Q 003561 561 TSSEIAAKEGPYETYHNSPVSKGILQPDMWNVIPSDRWDWGVLRDMISKNGVRNSLLVAPMPTASTSQILGNNECFEPYT 640 (811)
Q Consensus 561 aS~eLAke~G~~~~f~~S~~~~G~l~~d~~~~~~~~~~dW~~Lr~~i~~~G~RNs~l~AiaPT~stS~i~g~s~gieP~~ 640 (811)
||++||+|+|+||.|++|+|++|+|++|.|+..++..+||++||++|++||+|||+++|||||+|||+|+|+|+||||+|
T Consensus 561 aS~eLAke~G~fp~f~~S~~~~G~~~~~~~~~~~~~~~dW~~Lr~~i~~~GlRNs~l~AiaPT~StS~i~g~s~giEP~~ 640 (813)
T PLN02437 561 ASSELAAREGPYETYAGSPVSKGILQPDMWGVTPSGRWDWAALREMISKNGVRNSLLVAPMPTASTSQILGNNECFEPYT 640 (813)
T ss_pred HHHHHHHHhCCCCCCCcCcchhhhccchhccCCCchhhhHHHHHHHHHHhCcchhceeccCCcHHHHHHcCCCCcccccc
Confidence 99999999999999999999999999999988766788999999999999999999999999999999999999999999
Q ss_pred cceeEEEcccCceEEeChHHHHHHHHcCCCcHHHhhhhhccCCcccccCCCchHHHhhhhhhccCChHHHHHHHHHhccc
Q 003561 641 SNIYSRRVLSGEFVVVNKHLLHDLTEMGIWSPTIKNKIIYDDGSVQKIPEIPEELKMIYKTVWEIKQMTLVDMAVDRGCY 720 (811)
Q Consensus 641 s~~y~r~~~~g~~~~vn~~l~~~l~~~g~~~~~~~~~i~~~~Gsv~~i~~~p~~~k~~f~ta~ei~~~~~i~~~a~~Q~~ 720 (811)
+|+|.|++.+|+|++||++|+++|+++|+|+++++++|+.++|++|++|.+|++++.+|+|||||+|+++|+|||+||||
T Consensus 641 sn~y~R~~~~Ge~~~vn~~l~~~l~~~g~~~~~~~~~i~~~~gsvq~~~~lp~~~~~~f~tA~ei~~~~~I~~aA~rQ~~ 720 (813)
T PLN02437 641 SNIYSRRVLSGEFVVVNKHLLHDLTEMGLWTPTLKNKIIAENGSVQKIPEIPDDLKAIYKTVWEIKQRTLVDMAADRGCY 720 (813)
T ss_pred chheeEeecCceEEEECHHHHHHHHHcCCChHHHHHHHHhhCCCccCCCCCCHHHHHHhhhHHhCCHHHHHHHHHHhccc
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cccccceeEeeCCCCHHHHHHHHHHHHHcCCceEEEEecCccccccccccccccccccCCCCCccccc--cccccccccc
Q 003561 721 IDQSQSLNIHMDQPNFKKVTSLHFRTWSRGLKTGMYYLRSRAAADAIKFTVDTSVFKEKPEKPELVVD--DETKMAQVVC 798 (811)
Q Consensus 721 vDqs~S~~l~~~~~~~~~l~~~~~~Awk~GlKt~~YY~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~ 798 (811)
||||||+|||+++++.++|.++|++|||+||||+|||||+++++++++||||++.+...+.+..++.. ..+...+.+|
T Consensus 721 IDQsqS~nl~l~~~t~~~i~~~~~~Awk~GLKt~~YY~R~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 800 (813)
T PLN02437 721 IDQSQSLNIHMDQPNFGKLTSLHFYAWSKGLKTGMYYLRSRAAADAIKFTVDTASLKPSATGVAAPEEEDVETKMAQMVC 800 (813)
T ss_pred cccccccccCCCCCCHHHHHHHHHHHHHcCCCeeEEEEeccccccceEEecchhhhccccccccCccccccchhhhhccC
Confidence 99999999999988999999999999999999999999999999999999997765422111111111 2233455889
Q ss_pred ccCCccccccCCC
Q 003561 799 SLTNREECMACGS 811 (811)
Q Consensus 799 ~~~~~~~c~~c~~ 811 (811)
+++|+|.||+||+
T Consensus 801 ~~~~~~~c~~c~~ 813 (813)
T PLN02437 801 SLDNREECLACGS 813 (813)
T ss_pred CCCCccccccccC
Confidence 9999999999996
No 3
>PRK06539 ribonucleotide-diphosphate reductase subunit alpha; Validated
Probab=100.00 E-value=2.4e-197 Score=1738.96 Aligned_cols=781 Identities=33% Similarity=0.571 Sum_probs=730.3
Q ss_pred CeEEecCCceeecChHHHHHHHHHHHccCCCCCCCHHHHHHHHHhhcCCCCCHHHHHHHHHHHHHhhccCCCChHHHHHH
Q 003561 1 MYVVKRDGRQEAVHFDKITARLKKLSYGLSTEHCDPVLVSQKVCAGVYKGVTTSQLDELAAETAAAMTTNHPDYASLAAR 80 (811)
Q Consensus 1 ~~V~KrdG~~e~~~~~ki~~~i~~~~~~l~~~~v~~~~i~~~~~~~l~~gitt~ei~~~~~~~a~~~~~~~p~y~~lA~r 80 (811)
|+|+||||++|+|+++||+++|+++|+||+...+++.+|..++..+++|||||+||+++++++|++|+++||||++||||
T Consensus 3 ~~v~k~~g~~e~~~~~ki~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~tt~el~~~~~~~a~~~~~~~pdy~~~Aar 82 (822)
T PRK06539 3 ITVVKRDGSKEPYDANKVNAAIEDAARGLDDAITWVTQLASELEITLFDGITTQQLDEAVIQVALQNVKDDPAFDTVAAR 82 (822)
T ss_pred eEEEecCCccccCCHHHHHHHHHHHhcccCcccCcHHHHHHHHHhcccCCCCHHHHHHHHHHHHHHhhhhCccHHHHHHH
Confidence 57999999999999999999999999999755677889999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHhhhhhhH--HHHHHH-----HhhhhccCCcccCcChHHHHHHHhcHHHHHHhhcccccCCCChhhHHHHHH
Q 003561 81 IAVSNLHKNTKKSFSE--TIKDMY-----NHYNERSGLKAPLIADDIYEIIMKNAACLDSEIIYDRDFDYDYFGFKTLER 153 (811)
Q Consensus 81 l~~~~l~k~~~~~~~~--~~~~l~-----~~~~~~~~~~~~l~~~~~~~~~~~~~~~l~~~i~~~rd~~~~y~g~~~l~~ 153 (811)
|++++|||+++++|.+ .+..++ .++ +.++..|++++++++ ..|+++|++.|+|+||+.|+|+|+++|++
T Consensus 83 l~~~~l~k~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~--~~~~~~l~~~i~~~rD~~~~y~g~~~l~~ 158 (822)
T PRK06539 83 LLLKKIYKRVLGDYDSPEELQDLHANHFRRTI--EKGVAEGLLDSRLGG--LFDLERLAAALDPTRDELLKYIGVVTLNN 158 (822)
T ss_pred HHHHHHHHHHhccccchhHHHHHhHHHHHHHH--HhhccccccCHHHhC--HhHHHHHHhhhChhhhcCCCHHHHHHHHh
Confidence 9999999999988854 233332 222 357888999999987 36999999999999999999999999999
Q ss_pred hhcccc-CCcccCCHHHHHHHHHhHhcc---CCHHHHHHHHHHHhcCcEecccccccccCCCCCCCCccccccccCCCHH
Q 003561 154 SYLLKV-QGKVVERPQHMLMRVSIGIHK---DDIDSAIKTYHMMSQRWFTHASPTLFNAGTPRPQLSSCFLVCMKDDSIE 229 (811)
Q Consensus 154 ~Yl~k~-~g~~~E~pq~~~~RvA~~l~~---~~~~~~~~~y~~ls~~~~~~atP~l~naGt~~~~lsSCfl~~~~~Ds~~ 229 (811)
+||+|. +|+++|+||++|||||++||. ++.+++++||++||+++|+||||||+||||+++|||||||+++ +||++
T Consensus 159 rYllk~~~~~~~E~pq~~~mRVA~~la~~e~~~~~~a~~fY~~ls~~~f~~atPtL~NaGt~~~qlsSCFl~~v-~Dsl~ 237 (822)
T PRK06539 159 RYGIRARNGDALEVPQYFWMRIAMGLSLNEDDPTSSALAFYEKMSKLEYLAAGSTLVNAGTPYPQLSNCFVMEM-QDDIE 237 (822)
T ss_pred hccccCCCCCEeecHHHHHHHHHHHHHhhcCCcHHHHHHHHHHHHcCCeecCChhhhcCCCCCCCCceeeeccC-CCcHH
Confidence 999994 788999999999999999996 3578999999999999999999999999999999999999997 79999
Q ss_pred HHHHHHHHHHHHHHhcCCcceeeceecCCCCcccCCCCccCCcccHHHHHHHHHHHHhhCCCccccceEeeccCCcccHH
Q 003561 230 GIYETLKECAVISKSAGGIGVSVHNIRATGSYIRGTNGTSNGIVPMLRVFNDTARYVDQGGGKRKGAFAVYLEPWHADIF 309 (811)
Q Consensus 230 ~I~~~~~~~a~isk~ggGvG~~~s~iR~~Gs~I~g~~g~ssG~vp~lk~~~~~~~~v~QgG~~R~ga~~vyl~~wH~DI~ 309 (811)
||+++++++|+++|.|||||+|+|+|||+||+|+|++|+|+|+|||||+||+++++|+||| +||||+|+||++|||||+
T Consensus 238 ~I~~~~~~~a~isk~gGGiG~~~s~iR~~Gs~I~g~~g~ssG~vpflk~~d~~~~~v~QgG-~RrGA~~~yL~~wH~DI~ 316 (822)
T PRK06539 238 HIAKTTRDVMWLTKGTGGIGLSVSKLRAQGSPIRSNNTTSTGPIPFMHTIDSVLRAVSRGG-KKFGALCFYMENWHMDFP 316 (822)
T ss_pred HHHHHHHHHHHHHhhCCceeecccccCCCCCcccCCCCCCCChhhHHHHHHHHHHHHHhCC-CCcCceEEEecCCCcCHH
Confidence 9999999999999999999999999999999999999999999999999999999999999 899999999999999999
Q ss_pred HHHHhhhcCCcccccccccceecccCHHHHHHHHcCCceEEecCCCCCcchhhhhhHHHHHHHHHHhc---C--ceeEEE
Q 003561 310 EFLNLKKNHGKEEHRARDLFYALWVPDLFMERVQTNGQWSLFCPNEASGLADCWGAEFEKLYTHYERE---G--KAKKVV 384 (811)
Q Consensus 310 ~Fl~~K~~~g~e~~r~~~l~~sv~ipD~Fm~rv~~~~~W~Lf~P~~~~~L~~~yg~eF~~~Y~~~e~~---~--~~~~~v 384 (811)
+||++|+++|++++|++++|+||||||+||+||++|++|+||+|+++|+|.++||++|+++|++||+. | ..+++|
T Consensus 317 eFL~lk~n~g~e~~r~~~~n~sv~i~D~FM~~V~~d~~w~L~~P~~~~~l~~~yG~~f~~~Y~~~e~~~~~g~~~~~~~V 396 (822)
T PRK06539 317 EFLDLRQNSGDPYRRTRTANTAVWISDEFMKRVQNDEDWYLFDPLETPDLNELYGKAFSKRYAQYVEQAEAGRIRMFKRI 396 (822)
T ss_pred HHHHHhhcCCchhhhhccCceeeeeCHHHHHHHHcCCCeEEECCcccccHHHHhCcHHHHHHHHHHHhccccccceeeEE
Confidence 99999999999999999999999999999999999999999999999999999999999999999985 3 357999
Q ss_pred eHHHHHHHHHHHHHhhCCceeEehhhhhhhcCCCCCCceeeecCCccccccCCCCcceeEEecccccchhcccCCCCCCC
Q 003561 385 QAQNLWFEILTSQIETGTPYMLFKDTCNRKSNQQNLGTIKSSNLCTEIIEYTSPTETAVCNLASIALPRFVREKDVPVES 464 (811)
Q Consensus 385 ~Ar~L~~~I~~~~~etG~P~i~f~D~~Nr~~~~~~~g~I~~sNlC~EI~~~~~~~e~~~CNL~SInL~~~v~~~~~~~~~ 464 (811)
+||+||++|++++|+||+|||+|+|++|++||++|.|+|++||||+||+|+++++|+++|||+||||++||.+
T Consensus 397 ~Ar~Lw~~I~~~~~eTG~P~i~fkD~~N~~~~~~~~g~I~~SNlC~EI~l~~~~~e~~vCNL~SINL~~fv~~------- 469 (822)
T PRK06539 397 TAREQFRAILMSLQTTSHPWLTWKDTINNRALNNNTGTIHLSNLCTEICLPQDRDNVSVCNLASINLSRHLAD------- 469 (822)
T ss_pred eHHHHHHHHHHHHHHhCCCceEehhhHhhcCCCccCCcEeecCCcceeeccCCccccceeeeheeEHHHHhcc-------
Confidence 9999999999999999999999999999999999999999999999999999999999999999999999964
Q ss_pred CCccccccCCCCCccCCHHHHHHHHHHHHHHHHHHHhcCCCcHHHHHHHhhccCCeeeecchHHHHHHHcCCCCCCHHHH
Q 003561 465 HPSRIVGSRGSKNRFFDFEKLAEVTAIVTENLNKIIDVNYYPVETARRSNLRHRPIGIGVQGLADTFILLGMAFESPEAQ 544 (811)
Q Consensus 465 ~~~~~~g~~~~~~~~fD~~~L~~~v~~avr~LD~vId~~~~p~~~~~~~~~~~R~iGlGv~Glad~L~~~gi~y~S~ea~ 544 (811)
..|||+.|+++|+++||+||+|||+|.||+|+++++|+++|+||||+|||||+|+++|++|+|+||+
T Consensus 470 -------------~~fD~~~l~~~v~~avR~LDnVID~n~yP~~~a~~~n~~~R~IGLGvmGlad~L~~lgi~YdS~eA~ 536 (822)
T PRK06539 470 -------------GELDWAQLEESTRLAVRQLDNLIDITASSVKEADFSNQQNRAIGLGVMGFTDMVERLGYSYESEEAY 536 (822)
T ss_pred -------------ccCcHHHHHHHHHHHHHHHHHHHHcCcccHHHHHHHHHhcccccccchhHHHHHHHcCCCCCCHHHH
Confidence 2699999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhCCCCCCCCCccccCCCCccccccC-----------CCCcccHHHHHHHHHhcCcc
Q 003561 545 QLNKDIFETIYYHALKTSSEIAAKEGPYETYHNSPVSKGILQPDMWNVI-----------PSDRWDWGVLRDMISKNGVR 613 (811)
Q Consensus 545 ~l~~~i~e~i~~~a~~aS~eLAke~G~~~~f~~S~~~~G~l~~d~~~~~-----------~~~~~dW~~Lr~~i~~~G~R 613 (811)
+++++|||+|+|+|++||++||+|+|+||.|++|+|++|++++|.|... ++..+||+.||++++ +|+|
T Consensus 537 ~l~~~i~e~i~~~A~~aS~eLAkE~G~fp~f~~S~~~~G~l~~d~~~~~~~~~~~~~~~~~~~~~dW~~L~~~i~-~GlR 615 (822)
T PRK06539 537 DLIDRIMEHISYAAIDESADLAAERGAYPNFEGSRWSRGMVPVDSIALLEADRGVPVDVNRTTRLDWDALRAKVR-GGMR 615 (822)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhCCCCCcccChhhhhhcchhhhhhhhhhccccccccccchhcHHHHHHHHH-hCee
Confidence 9999999999999999999999999999999999999999999887632 123689999999985 6999
Q ss_pred ccceeccCCCCccccccCCCccccccccceeEEEcccCceEEeChHHHHHHHHcCCCcHHHhhhhhccCCcccccCCCch
Q 003561 614 NSLLVAPMPTASTSQILGNNECFEPYTSNIYSRRVLSGEFVVVNKHLLHDLTEMGIWSPTIKNKIIYDDGSVQKIPEIPE 693 (811)
Q Consensus 614 Ns~l~AiaPT~stS~i~g~s~gieP~~s~~y~r~~~~g~~~~vn~~l~~~l~~~g~~~~~~~~~i~~~~Gsv~~i~~~p~ 693 (811)
||+++|||||||||+|+|+|+||||+|+++|.|++.+|+|.++|++|+++|+++|+| +++++.|+..+|++|+++.+|+
T Consensus 616 Ns~l~AiAPTgS~S~i~g~S~gIEP~~s~~y~R~~~~G~f~~vn~~l~~~L~~~g~~-~~~~~~i~~~~Gsvq~i~~iP~ 694 (822)
T PRK06539 616 NATLMAIAPTASIGLVAGTTPGLDPQFSQIFSRSTSSGKFLEVNRNLVADLKELGLW-ETVREEILRSQGDIQEIAAIPD 694 (822)
T ss_pred ccceeecCCchhHHHhcCCCCCcCcchhhhheeecccceEEEeCHHHHHHHHHcCCC-HHHHHHHHHhCCCccCcccCCh
Confidence 999999999999999999999999999999999999999999999999999999999 5888889899999999999999
Q ss_pred HHHhhhhhhccCChHHHHHHHHHhccccccccceeEeeCCCCHHHHHHHHHHHHHcCCceEEEEecCccccccccccccc
Q 003561 694 ELKMIYKTVWEIKQMTLVDMAVDRGCYIDQSQSLNIHMDQPNFKKVTSLHFRTWSRGLKTGMYYLRSRAAADAIKFTVDT 773 (811)
Q Consensus 694 ~~k~~f~ta~ei~~~~~i~~~a~~Q~~vDqs~S~~l~~~~~~~~~l~~~~~~Awk~GlKt~~YY~r~~~~~~~~~~~~~~ 773 (811)
+++++|+|||||+|++||+|||++|||||||||+|||+++++.++|.++|++||++|||| |||+|+++++++++||||.
T Consensus 695 ~~~~~f~tA~eI~~~~~I~maA~rQ~~IDqsiS~nl~l~~~t~~~v~~iy~~Aw~~GlKT-~YYlrt~~~~~~~~~t~~~ 773 (822)
T PRK06539 695 EIKALYRTSFQLSPYAFLEVAARAQKWVDQAISRNMYLESRDIGDMMDIYTAAWEMGVKT-TYYLHMKPRHTAEQSTVKV 773 (822)
T ss_pred HHHhhcCcHhhCCHHHHHHHHHHHCccchhhcCCeeecCCCCHHHHHHHHHHHHHcCCCe-EEeeccchhhhhhhhcccc
Confidence 999999999999999999999999999999999999999999999999999999999999 9999999999999999999
Q ss_pred cccccCCCC-Ccc---------cccccccccccccccCCcc--ccccCC
Q 003561 774 SVFKEKPEK-PEL---------VVDDETKMAQVVCSLTNRE--ECMACG 810 (811)
Q Consensus 774 ~~~~~~~~~-~~~---------~~~~~~~~~~~~~~~~~~~--~c~~c~ 810 (811)
+........ ++. +....+..+..+|..+.++ .|++|.
T Consensus 774 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 822 (822)
T PRK06539 774 NKSAERRGGPRRGFAGFGAGVPPAVSADLIPGASCPVDAQAPQQCESCR 822 (822)
T ss_pred chhcccCCCCCCcccccCCCCCceeecccccccCCCCCCCCCCCCCCCC
Confidence 876553222 111 1222334556779988775 699995
No 4
>PRK07207 ribonucleotide-diphosphate reductase subunit alpha; Validated
Probab=100.00 E-value=1.2e-197 Score=1767.63 Aligned_cols=782 Identities=39% Similarity=0.667 Sum_probs=727.3
Q ss_pred CeEEecCCceeecChHHHHHHHHHHHccCCCCCCCHHHHHHHHHhhcCCCCCHHHHHHHHHHHHHhhccCCCChHHHHHH
Q 003561 1 MYVVKRDGRQEAVHFDKITARLKKLSYGLSTEHCDPVLVSQKVCAGVYKGVTTSQLDELAAETAAAMTTNHPDYASLAAR 80 (811)
Q Consensus 1 ~~V~KrdG~~e~~~~~ki~~~i~~~~~~l~~~~v~~~~i~~~~~~~l~~gitt~ei~~~~~~~a~~~~~~~p~y~~lA~r 80 (811)
|+|+||||++|+||.+||.++|+++|+|| +++|+++++.++...+++|||++||+++++++|++|+..||||+++|||
T Consensus 149 ~~v~~~~g~~~~l~~ekL~~lI~~a~~gL--envn~d~Lv~kt~r~LydGIttkEL~~aLI~~a~~~~~~~p~y~~~Aar 226 (965)
T PRK07207 149 LNVTLDDGVRRPLDMARLRALIEEACEGL--EAVDAEPILAETLKNLYDGVPMDEVYKALILAARTLIEKEPNYSYVTAR 226 (965)
T ss_pred eEEEeccCccccCCHHHHHHHHHHHhccc--ccCCHHHHHHHHHhhhcCCCCHHHHHHHHHHHHHHhcccCCCHHHHHHH
Confidence 57999999999999999999999999999 4699999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHhhhh--------hhHHHHHHHHhhhh--ccCCcccCcChHHHHHHHhcHHHHHHhhcccccCCCChhhHHH
Q 003561 81 IAVSNLHKNTKKS--------FSETIKDMYNHYNE--RSGLKAPLIADDIYEIIMKNAACLDSEIIYDRDFDYDYFGFKT 150 (811)
Q Consensus 81 l~~~~l~k~~~~~--------~~~~~~~l~~~~~~--~~~~~~~l~~~~~~~~~~~~~~~l~~~i~~~rd~~~~y~g~~~ 150 (811)
|++.+|||++.+. +.+....+..++.. +.|+..++++++++++ ++++|+++|+++||+.|+|+|+++
T Consensus 227 l~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~l~~~i~~~rd~~f~y~g~~~ 303 (965)
T PRK07207 227 LLLDTLRREALGFLGVPEEVTQAEMATRYAEYFPAFIKKGIEAELLDPKLAQF---DLERLGAALDPERDLQFTYLGLQT 303 (965)
T ss_pred HHHHHHHHHHHhhccccccchhhHHHHHHHHHHHHHHHhccchhhhhHHHHHh---hHHHHHHHhhHHHhCCCCHHHHHH
Confidence 9999999998641 11122222222111 3588888999988764 899999999999999999999999
Q ss_pred HHHhhccccCCcccCCHHHHHHHHHhHhccC---CHHHHHHHHHHHhcCcEecccccccccCCCCCCCCccccccccCCC
Q 003561 151 LERSYLLKVQGKVVERPQHMLMRVSIGIHKD---DIDSAIKTYHMMSQRWFTHASPTLFNAGTPRPQLSSCFLVCMKDDS 227 (811)
Q Consensus 151 l~~~Yl~k~~g~~~E~pq~~~~RvA~~l~~~---~~~~~~~~y~~ls~~~~~~atP~l~naGt~~~~lsSCfl~~~~~Ds 227 (811)
|+++||+|.+|.++|+||++|||||++||.. +.+++++||++||+++|+||||||+|+||+++|||||||+++ +||
T Consensus 304 l~~rYllk~~~~~~E~pq~~~mRVA~~la~~e~~~~~~a~~fy~~ls~~~~~~aTPtl~NaGt~~~qlsSCfl~~v-~Ds 382 (965)
T PRK07207 304 LYDRYFLHVDGTRIELPQAFFMRVAMGLALNEIDREARAIEFYNLLSSFDFMSSTPTLFNSGTLRPQLSSCYLTTV-PDD 382 (965)
T ss_pred HHHhhcccCCCCeeecHHHHHHHHHHHHHHhccccHHHHHHHHHHHHcCCeecCCHHHhcCCCCCCCeeeeEeCCC-ccc
Confidence 9999999988889999999999999999963 568999999999999999999999999999999999999987 899
Q ss_pred HHHHHHHHHHHHHHHHhcCCcceeeceecCCCCcccCCCCccCCcccHHHHHHHHHHHHhhCCCccccceEeeccCCccc
Q 003561 228 IEGIYETLKECAVISKSAGGIGVSVHNIRATGSYIRGTNGTSNGIVPMLRVFNDTARYVDQGGGKRKGAFAVYLEPWHAD 307 (811)
Q Consensus 228 ~~~I~~~~~~~a~isk~ggGvG~~~s~iR~~Gs~I~g~~g~ssG~vp~lk~~~~~~~~v~QgG~~R~ga~~vyl~~wH~D 307 (811)
++|||+++++++++||+|||||+|+|+|||+|++|+|++|+|+|+|||||+||+++.+|+||| +|+||+|+||++||||
T Consensus 383 l~~I~~~~~~~a~lsk~gGGiG~~~s~lR~~Gs~I~g~~g~ssGvvpflk~~n~~~~~v~QgG-~R~GA~~vyL~~wH~D 461 (965)
T PRK07207 383 LDGIYEAIKDNALLSKFAGGLGNDWTPVRALGSHIKGTNGKSQGVVPFLKVVNDTAVAVNQGG-KRKGAVCAYLETWHLD 461 (965)
T ss_pred HHHHHHHHHHHHHHHhcCCeeeecccccCCCCCccCCCCCCCCChhHHHHHHHHHHHHHHcCC-cCccceeeEecCCCcc
Confidence 999999999999999999999999999999999999999999999999999999999999999 8999999999999999
Q ss_pred HHHHHHhhhcCCcccccccccceecccCHHHHHHHHcCCceEEecCCCCCcchhhhhhHHHHHHHHHHhcC-----ceeE
Q 003561 308 IFEFLNLKKNHGKEEHRARDLFYALWVPDLFMERVQTNGQWSLFCPNEASGLADCWGAEFEKLYTHYEREG-----KAKK 382 (811)
Q Consensus 308 I~~Fl~~K~~~g~e~~r~~~l~~sv~ipD~Fm~rv~~~~~W~Lf~P~~~~~L~~~yg~eF~~~Y~~~e~~~-----~~~~ 382 (811)
|++||++|+++|++++|++++|+||||||+||+||++|++|+||+|+++|+|.++||++|+++|++||+.+ ..++
T Consensus 462 I~eFL~lk~~~gde~~r~~~l~~av~ipD~FM~rv~~d~~w~Lf~P~~~~~L~~~yG~~f~~~Y~~~e~~~~~g~~~~~~ 541 (965)
T PRK07207 462 IEEFLELRKNTGDDRRRTHDMNTANWIPDLFMKRVMEDGEWTLFSPSEVPDLHDLFGKAFEEAYTAYEAKAARGEIKLFK 541 (965)
T ss_pred HHHHHHHhhccCchhhHhhcCchhhccCHHHHHHHHcCCCEEEecCcccccHHhhhhhHHHHHHHHHHHhcccCCcceee
Confidence 99999999999999999999999999999999999999999999999999999999999999999999753 3579
Q ss_pred EEeHHHHHHHHHHHHHhhCCceeEehhhhhhhcCCCCCCceeeecCCccccccCCCCcceeEEecccccchhcccCCCCC
Q 003561 383 VVQAQNLWFEILTSQIETGTPYMLFKDTCNRKSNQQNLGTIKSSNLCTEIIEYTSPTETAVCNLASIALPRFVREKDVPV 462 (811)
Q Consensus 383 ~v~Ar~L~~~I~~~~~etG~P~i~f~D~~Nr~~~~~~~g~I~~sNlC~EI~~~~~~~e~~~CNL~SInL~~~v~~~~~~~ 462 (811)
+|+||+||++|++++|+||+|||+|+|+||++||++|.|+|++||||+||+|+++++|+++|||+||||++||.+
T Consensus 542 ~v~Ar~Lw~~I~~~~~eTG~P~i~fkD~~N~~~~~~~~g~I~~SNlCtEI~l~~~~~e~avCNLgSINL~~~v~~----- 616 (965)
T PRK07207 542 KIPAVDLWRKMLSMLFETGHPWITFKDPCNLRSPQQHVGVVHSSNLCTEITLNTSDDEIAVCNLGSVNLVAHIKD----- 616 (965)
T ss_pred EeeHHHHHHHHHHHHHHhCCCeeehhHHHHhcCCcccCCeEeecCCCcceeecCCCcceeeeeccceeHHHHhhC-----
Confidence 999999999999999999999999999999999999999999999999999999999999999999999999964
Q ss_pred CCCCccccccCCCCCccCCHHHHHHHHHHHHHHHHHHHhcCCCcHHHHHHHhhccCCeeeecchHHHHHHHcCCCCCCHH
Q 003561 463 ESHPSRIVGSRGSKNRFFDFEKLAEVTAIVTENLNKIIDVNYYPVETARRSNLRHRPIGIGVQGLADTFILLGMAFESPE 542 (811)
Q Consensus 463 ~~~~~~~~g~~~~~~~~fD~~~L~~~v~~avr~LD~vId~~~~p~~~~~~~~~~~R~iGlGv~Glad~L~~~gi~y~S~e 542 (811)
...|||+.|+++|+++||+||+|||+|.||+|+++++|+++|+||||+|||||+|+++|++|+|+|
T Consensus 617 --------------~~~~D~~~l~~~v~~avr~LDnVID~n~yp~~~a~~~n~~~R~IGLGvmGlad~L~~lgi~Y~S~e 682 (965)
T PRK07207 617 --------------GAKLDHEKLKRTVSTAMRMLDNVIDINYYAVPKARNSNLRHRPVGLGIMGFQDALYLLRIPYASDE 682 (965)
T ss_pred --------------CCcCCHHHHHHHHHHHHHhccceeeCCCCcHHHHHHHhhccCCccccHHHHHHHHHHCCCCCCCHH
Confidence 125999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCCCCCCccccCCCCccccccC-----------CCCcccHHHHHHHHHhcC
Q 003561 543 AQQLNKDIFETIYYHALKTSSEIAAKEGPYETYHNSPVSKGILQPDMWNVI-----------PSDRWDWGVLRDMISKNG 611 (811)
Q Consensus 543 a~~l~~~i~e~i~~~a~~aS~eLAke~G~~~~f~~S~~~~G~l~~d~~~~~-----------~~~~~dW~~Lr~~i~~~G 611 (811)
|++|+++|||.|+|+|++||++||+|+|+||.|++|+|++|++|+|.|+.. .+..+||++||++|++||
T Consensus 683 A~~l~~~i~e~i~y~A~~aS~eLA~E~G~~~~f~gS~~~~g~~~~d~~~~~~~~r~~~~~~~~~~~~dW~~Lr~~i~~~G 762 (965)
T PRK07207 683 AVEFADRSMEAVSYYAIWASTELAEERGRYSSYEGSLWSRGILPIDSLKLLAEARGGYLEVDRSSTLDWDALRARIKKHG 762 (965)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCCCCcChhhcCccchhhhhhhhhhhcccccccccchhhHHHHHHHHHHhC
Confidence 999999999999999999999999999999999999999999999988632 234679999999999999
Q ss_pred ccccceeccCCCCccccccCCCccccccccceeEEEcccCceEEeChHHHHHHHHcCCCcHHHhhhhhccCCcccccCCC
Q 003561 612 VRNSLLVAPMPTASTSQILGNNECFEPYTSNIYSRRVLSGEFVVVNKHLLHDLTEMGIWSPTIKNKIIYDDGSVQKIPEI 691 (811)
Q Consensus 612 ~RNs~l~AiaPT~stS~i~g~s~gieP~~s~~y~r~~~~g~~~~vn~~l~~~l~~~g~~~~~~~~~i~~~~Gsv~~i~~~ 691 (811)
+|||+++|||||+|||+|+|+|+||||+|+|+|.|++.+|+|+++|++|+++|+++|+|+++++++|...+||+|++|.+
T Consensus 763 ~RNs~l~AiAPT~S~S~i~g~s~giEP~~s~~y~r~~~~g~f~~vn~~l~~~l~~~~~~~~~~~~~i~~~~Gsvq~i~~i 842 (965)
T PRK07207 763 MRNSNCMAIAPTATISNIIGVSQSIEPTYQNLYVKSNLSGEFTVVNPYLVRDLKARGLWDEVMVNDLKYFDGSLQRIDRI 842 (965)
T ss_pred ccccceeccCChHHHHHHhCCCCccCcCchhhheeeccCCceEEeCHHHHHHHHHcCCChHHHHHHHHhcCCCccCCCCC
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred chHHHhhhhhhccCChHHHHHHHHHhccccccccceeEeeCCCCHHHHHHHHHHHHHcCCceEEEEecCccccccccccc
Q 003561 692 PEELKMIYKTVWEIKQMTLVDMAVDRGCYIDQSQSLNIHMDQPNFKKVTSLHFRTWSRGLKTGMYYLRSRAAADAIKFTV 771 (811)
Q Consensus 692 p~~~k~~f~ta~ei~~~~~i~~~a~~Q~~vDqs~S~~l~~~~~~~~~l~~~~~~Awk~GlKt~~YY~r~~~~~~~~~~~~ 771 (811)
|++++++|+|||||+|+++|+|+|+||||||||||+|||+++++.++|.++|++||++|||| +||||+++++++++|||
T Consensus 843 p~~~k~~f~tA~ei~~~~~I~~~A~rQ~~IDqsqS~nl~~~~~t~~~l~~~y~~Aw~~GlKt-~YY~Rs~~~~~~~~~t~ 921 (965)
T PRK07207 843 PADLKALYATAFEVDPRWLVEAASRRQKWIDQAQSLNLYMAGASGKKLDETYKLAWLRGLKT-TYYLRTLGATHVEKSTV 921 (965)
T ss_pred ChhHHhhcccCccCCHHHHHHHHHHHcCcchhhhcCCcCCCCCCHHHHHHHHHHHHHcCCCe-EEEEecccccchhhhcc
Confidence 99999999999999999999999999999999999999999889999999999999999999 89999999999999999
Q ss_pred cccccccCCCCCc------ccccccccccccccccCCccccccCC
Q 003561 772 DTSVFKEKPEKPE------LVVDDETKMAQVVCSLTNREECMACG 810 (811)
Q Consensus 772 ~~~~~~~~~~~~~------~~~~~~~~~~~~~~~~~~~~~c~~c~ 810 (811)
|...+......++ +.........+.+|++++|+ ||+|+
T Consensus 922 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~ 965 (965)
T PRK07207 922 NTGALNAVSSGGGGAGGAAAAAAAPPAADPKACSIDDPD-CEACQ 965 (965)
T ss_pred ccccccccCCCccccccccccccCCCCCCCCcccCCCCC-CcccC
Confidence 9765554322111 00001123346789998886 99996
No 5
>PRK12365 ribonucleotide-diphosphate reductase subunit alpha; Provisional
Probab=100.00 E-value=2.3e-195 Score=1764.54 Aligned_cols=778 Identities=38% Similarity=0.637 Sum_probs=718.1
Q ss_pred CeEEecCCceeecChHHHHHHHHHHHccCCCCCCCHHHHHHHHHhhcCCCCCHHHHHHHHHHHHHhhccCCCChHHHHHH
Q 003561 1 MYVVKRDGRQEAVHFDKITARLKKLSYGLSTEHCDPVLVSQKVCAGVYKGVTTSQLDELAAETAAAMTTNHPDYASLAAR 80 (811)
Q Consensus 1 ~~V~KrdG~~e~~~~~ki~~~i~~~~~~l~~~~v~~~~i~~~~~~~l~~gitt~ei~~~~~~~a~~~~~~~p~y~~lA~r 80 (811)
++|+||||++|+||++||+++|+++|+||+ ..+++..++.++...++|||||+||+++++++|++|++.||||++||||
T Consensus 236 ~~v~~~~g~~~~~~~~~~~~~~~~~~~~l~-~~~~~~~~~~~~~~~~~~~~~~~e~~~~~~~~a~~~~~~~p~y~~~Aar 314 (1046)
T PRK12365 236 YEVLSKDGSTYTMTKSQLLAHFAWACSRFP-ETTDAALLADMAFANFYSGIKESEVVLACIMAARANIEKEPDYAFVAAE 314 (1046)
T ss_pred eEEEEeCCccccCCHHHHHHHHHHHhcccc-ccCcHHHHHHHHHhccCCCCCHHHHHHHHHHHHHHhCccCCCHHHHHHH
Confidence 469999999999999999999999999996 4588899999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHhhh------hhhHHHHHHHHhhhhccCCcccCcChHHHHHHHhcHHHHHHhhcccccCCCChhhHHHHHHh
Q 003561 81 IAVSNLHKNTKK------SFSETIKDMYNHYNERSGLKAPLIADDIYEIIMKNAACLDSEIIYDRDFDYDYFGFKTLERS 154 (811)
Q Consensus 81 l~~~~l~k~~~~------~~~~~~~~l~~~~~~~~~~~~~l~~~~~~~~~~~~~~~l~~~i~~~rd~~~~y~g~~~l~~~ 154 (811)
|++.+|||++.+ .|...+..++...- ..|.. +.+.++ +...++++|+++|+++||+.|+|+|+++|+++
T Consensus 315 l~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~-~~~~~~---~~~~~~~~l~~~i~~~rd~~f~y~g~~~l~~~ 389 (1046)
T PRK12365 315 LLLDVVYKEALGKSKYDEDLEEAHKDHFKRYI-LEGDT-YRLNPE---LKHYDLDALAEALDLSRDLQFSYMGVQNLYDR 389 (1046)
T ss_pred HHHHHHHHHHhcccccchhHHHHHHHHHHHHH-hcCch-hhhHHH---hhhhhHHHHHHHHhHHhhCCCCHHHHHHHHHh
Confidence 999999999965 33333333332211 12211 233333 34459999999999999999999999999999
Q ss_pred hccccCCcccCCHHHHHHHHHhHhcc----CCHHHHHHHHHHHhcCcEecccccccccCCCCCCCCccccccccCCCHHH
Q 003561 155 YLLKVQGKVVERPQHMLMRVSIGIHK----DDIDSAIKTYHMMSQRWFTHASPTLFNAGTPRPQLSSCFLVCMKDDSIEG 230 (811)
Q Consensus 155 Yl~k~~g~~~E~pq~~~~RvA~~l~~----~~~~~~~~~y~~ls~~~~~~atP~l~naGt~~~~lsSCfl~~~~~Ds~~~ 230 (811)
||+|.+|+++|+||++|||||++||. ++.+++++||++||+++|+||||||+|+||+++|||||||+++ +||++|
T Consensus 390 Yl~~~~~~~~E~pq~~~mRVA~~la~~e~~~~~~~a~~fy~~ls~~~f~~atPtl~NaGt~~~qlsSCfl~~v-~Dsl~~ 468 (1046)
T PRK12365 390 YFNHHEGRRLETPQIFWMRVSMGLALNEGQDKTSWAITFYNLLSTFRYTPATPTLFNSGMRHSQLSSCYLSTV-QDDLVH 468 (1046)
T ss_pred hCcCCCCCcccCHHHHHHHHHHHHHHhcccccHHHHHHHHHHHHcCCeecCChhhhcCCCCCCCceeeEeCCC-cccHHH
Confidence 99998889999999999999999985 3567899999999999999999999999999999999999987 899999
Q ss_pred HHHHHHHHHHHHHhcCCcceeeceecCCCCcccCCCCccCCcccHHHHHHHHHHHHhhCCCccccceEeeccCCcccHHH
Q 003561 231 IYETLKECAVISKSAGGIGVSVHNIRATGSYIRGTNGTSNGIVPMLRVFNDTARYVDQGGGKRKGAFAVYLEPWHADIFE 310 (811)
Q Consensus 231 I~~~~~~~a~isk~ggGvG~~~s~iR~~Gs~I~g~~g~ssG~vp~lk~~~~~~~~v~QgG~~R~ga~~vyl~~wH~DI~~ 310 (811)
||+++++++++||+|||||+|+|+|||+|++|+|++|+|+|+|||||+||+++.+|+||| +|+||+|+||++|||||++
T Consensus 469 I~~~~~~~a~lsk~gGGiG~~~s~iR~~Gs~I~g~~g~ssG~vpflk~~n~~~~~v~QgG-~R~GA~~~yL~~wH~DI~e 547 (1046)
T PRK12365 469 IYKVISDNAMLSKWAGGIGNDWTAVRATGALIKGTNGKSQGVIPFIKVANDTAVAVNQGG-KRKGAVCVYLEVWHLDYED 547 (1046)
T ss_pred HHHHHHHHHHHHhcCCceeecccccCCCCCccCCCCCCCCChHhHHHHHHHHHHHHHhCC-cccCceeEEEeCCCccHHH
Confidence 999999999999999999999999999999999999999999999999999999999999 8999999999999999999
Q ss_pred HHHhhhcCCcccccccccceecccCHHHHHHHHcCCceEEecCCCCCcchhhhhhHHHHHHHHHHhc---C--ceeEEEe
Q 003561 311 FLNLKKNHGKEEHRARDLFYALWVPDLFMERVQTNGQWSLFCPNEASGLADCWGAEFEKLYTHYERE---G--KAKKVVQ 385 (811)
Q Consensus 311 Fl~~K~~~g~e~~r~~~l~~sv~ipD~Fm~rv~~~~~W~Lf~P~~~~~L~~~yg~eF~~~Y~~~e~~---~--~~~~~v~ 385 (811)
||++|+++|++++|++++|+||||||+||+||++|++|+||+|+++|+|.++||++|+++|++||+. | ..+++|+
T Consensus 548 FL~lk~~~g~e~~r~~~l~~~v~ipD~FM~~v~~~~~w~Lf~P~~~~~l~~~yG~~f~~~Y~~ye~~~~~g~~~~~~~v~ 627 (1046)
T PRK12365 548 FLELRKNTGDERRRTHDINTASWIPDLFFKRLQQKGTWTLFSPDDVPGLHEAYGEEFEKLYEEYERKVDTGEIRLYKKVE 627 (1046)
T ss_pred HHHHhhhcccHHHHhhccchhhccCHHHHHHHHcCCCeEEECccccccHHHHhchHHHHHHHHHHHhhhcCCcceeeEEe
Confidence 9999999999999999999999999999999999999999999999999999999999999999975 4 3569999
Q ss_pred HHHHHHHHHHHHHhhCCceeEehhhhhhhcCCCCCCceeeecCCccccccCCCCcceeEEecccccchhcccCCCCCCCC
Q 003561 386 AQNLWFEILTSQIETGTPYMLFKDTCNRKSNQQNLGTIKSSNLCTEIIEYTSPTETAVCNLASIALPRFVREKDVPVESH 465 (811)
Q Consensus 386 Ar~L~~~I~~~~~etG~P~i~f~D~~Nr~~~~~~~g~I~~sNlC~EI~~~~~~~e~~~CNL~SInL~~~v~~~~~~~~~~ 465 (811)
||+||++|++++|+||+|||+|+|+||++||++|.|+|++||||+||+|+++++++++|||+||||++||.+
T Consensus 628 Ar~Lw~~I~~~~~eTG~P~i~f~D~~N~~~~~~~~G~I~~SNlC~Ei~l~~~~~e~~vCNL~SiNL~~~v~~-------- 699 (1046)
T PRK12365 628 AEDLWRKMLSMLYETGHPWMTFKDPSNIRSAQDHKGVVRCSNLCTEILLNCSETETAVCNLGSINLVEHIVN-------- 699 (1046)
T ss_pred HHHHHHHHHHHHHHhCCCeEEehhhhhhcCCCCcCCeeEecCCCcceeecccCCcCceeecchhhHHHhccc--------
Confidence 999999999999999999999999999999999999999999999999999999999999999999999854
Q ss_pred CccccccCCCCCccCCHHHHHHHHHHHHHHHHHHHhcCCCcHHHHHHHhhccCCeeeecchHHHHHHHcCCCCCCHHHHH
Q 003561 466 PSRIVGSRGSKNRFFDFEKLAEVTAIVTENLNKIIDVNYYPVETARRSNLRHRPIGIGVQGLADTFILLGMAFESPEAQQ 545 (811)
Q Consensus 466 ~~~~~g~~~~~~~~fD~~~L~~~v~~avr~LD~vId~~~~p~~~~~~~~~~~R~iGlGv~Glad~L~~~gi~y~S~ea~~ 545 (811)
..|||+.|+++|+++|||||+|||+|.||+++++++|+++|+||||+|||||+|+++|+||+|+||++
T Consensus 700 ------------~~~D~~~l~~~v~~avr~LDnVID~n~yP~~~a~~~n~~~R~IGLGvmGlad~L~~~gi~Y~S~ea~~ 767 (1046)
T PRK12365 700 ------------DGLDEEKLSETISIAIRILDNVIDINFYPTKEAKEANLAHRAIGLGVMGFQDALYKLNISYASQEAVE 767 (1046)
T ss_pred ------------ccCCHHHHHHHHHHHHHHHHHHHhcccCcHHHHHHHHHhcCCcccchhhHHHHHHHcCCCCCCHHHHH
Confidence 25999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhCCCCCCCCCccccCCCCccccccC------------CCCcccHHHHHHHHHhcCcc
Q 003561 546 LNKDIFETIYYHALKTSSEIAAKEGPYETYHNSPVSKGILQPDMWNVI------------PSDRWDWGVLRDMISKNGVR 613 (811)
Q Consensus 546 l~~~i~e~i~~~a~~aS~eLAke~G~~~~f~~S~~~~G~l~~d~~~~~------------~~~~~dW~~Lr~~i~~~G~R 613 (811)
|+++|||+|+|+|++||++||+|+|+||.|++|+|++|+|++|.|... ++..++|++||++|++||+|
T Consensus 768 ~~~~i~e~i~~~A~~aS~eLA~e~G~y~~f~~S~~~~g~l~~d~~~~~~~~~~~~~~~~~~~~~~~W~~Lr~~i~~~GlR 847 (1046)
T PRK12365 768 FADYSSELIAYYAILASSLLAKERGTYSSYKGSKWDRGYLPIDTIELLKEYRGEANLLMDTSSRKDWEPVRSLIKEYGMR 847 (1046)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhCCCCCCCcChhhhhhcchhhhhhhhhhhccccccccccchhhHHHHHHHHHHhCcc
Confidence 999999999999999999999999999999999999999999987631 22367999999999999999
Q ss_pred ccceeccCCCCccccccCCCccccccccceeEEEcccCceEEeChHHHHHHHHcCCCcHHHhhhhhccCCcccccCCCch
Q 003561 614 NSLLVAPMPTASTSQILGNNECFEPYTSNIYSRRVLSGEFVVVNKHLLHDLTEMGIWSPTIKNKIIYDDGSVQKIPEIPE 693 (811)
Q Consensus 614 Ns~l~AiaPT~stS~i~g~s~gieP~~s~~y~r~~~~g~~~~vn~~l~~~l~~~g~~~~~~~~~i~~~~Gsv~~i~~~p~ 693 (811)
||+++|||||+|||+|+|+|+||||+|+|+|.|++.+|+|.++|++|+++|+++|+|++++++.|..++||||+++.+|+
T Consensus 848 Ns~l~AiaPT~S~S~i~g~s~giEP~~s~~y~r~~~~G~~~~~n~~l~~~l~~~~~~~~~~~~~i~~~~Gsvq~i~~ip~ 927 (1046)
T PRK12365 848 NSQLMAIAPTATISNIIGVTQSIEPTYKHLFVKSNLSGEFTIPNVYLIEKLKKLGIWDADMLDDLKYFDGSLLEIERIPD 927 (1046)
T ss_pred hhcceeeCCCchHHHHhCCCCCcccchhhhheeeccCCeEEEecHHHHHHHHHcCCChHHHHHHHHHhcCCcccccCCch
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHhhhhhhccCChHHHHHHHHHhccccccccceeEeeCCCCHHHHHHHHHHHHHcCCceEEEEecCccccccccccccc
Q 003561 694 ELKMIYKTVWEIKQMTLVDMAVDRGCYIDQSQSLNIHMDQPNFKKVTSLHFRTWSRGLKTGMYYLRSRAAADAIKFTVDT 773 (811)
Q Consensus 694 ~~k~~f~ta~ei~~~~~i~~~a~~Q~~vDqs~S~~l~~~~~~~~~l~~~~~~Awk~GlKt~~YY~r~~~~~~~~~~~~~~ 773 (811)
++|++|+|||||+|+++|+|+|+||||||||||+|||+++++.++|.++|++||++|||| |||||+++++++++||||.
T Consensus 928 ~~k~~y~tA~ei~~~~~I~~~A~rQk~IDqs~S~nl~~~~~~~~~l~~~y~~Aw~~GlKt-~YY~Rt~~a~~~~~~t~~~ 1006 (1046)
T PRK12365 928 HLKKIFLTAFEIEPEWIIECASRRQKWIDMGQSLNLYLAEPDGKKLSNMYLTAWKKGLKT-TYYLRSSAATSVEKSFVDI 1006 (1046)
T ss_pred HHHhhcCcHHhCCHHHHHHHHHHHcCccchhhcCCcCCCCCCHHHHHHHHHHHHHcCCCe-EEEeeccccchhhhhcccC
Confidence 999999999999999999999999999999999999999889999999999999999999 8999999999999999998
Q ss_pred cccccCCCC---Cc--ccccccc-cccccccccCCccccccCC
Q 003561 774 SVFKEKPEK---PE--LVVDDET-KMAQVVCSLTNREECMACG 810 (811)
Q Consensus 774 ~~~~~~~~~---~~--~~~~~~~-~~~~~~~~~~~~~~c~~c~ 810 (811)
.. .+...+ .+ +.....+ ...+.+|++ +|+ ||+|+
T Consensus 1007 ~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~-~~~~~ 1046 (1046)
T PRK12365 1007 NK-RGIQPRWMKNKSASTSIVVERAKKTPVCSL-EEG-CESCQ 1046 (1046)
T ss_pred Cc-ccCCCCcccccccccccCCCcccCCCcccC-CCC-CcccC
Confidence 75 332221 11 0000111 233578999 555 99996
No 6
>PRK08447 ribonucleotide-diphosphate reductase subunit alpha; Validated
Probab=100.00 E-value=2.4e-184 Score=1616.52 Aligned_cols=697 Identities=38% Similarity=0.610 Sum_probs=649.6
Q ss_pred CeEEecCCceeecChHHHHHHHHHHHccCCCCCCCHHHHHHHHHhhcCCCCCHHHHHHHHHHHHHhhc-cCCCChHHHHH
Q 003561 1 MYVVKRDGRQEAVHFDKITARLKKLSYGLSTEHCDPVLVSQKVCAGVYKGVTTSQLDELAAETAAAMT-TNHPDYASLAA 79 (811)
Q Consensus 1 ~~V~KrdG~~e~~~~~ki~~~i~~~~~~l~~~~v~~~~i~~~~~~~l~~gitt~ei~~~~~~~a~~~~-~~~p~y~~lA~ 79 (811)
|+|+||||+.|+|+++||++++.++|+||+ .+|+++|+.++..++++||||+||++++|++|++|+ ..||||.++||
T Consensus 2 ~~v~k~~g~~e~~~~~ki~~~~~~~~~~l~--~~~~~~~~~~~~~~~~~~~t~~el~~~~i~~a~~~~~~~~pdy~~~Aa 79 (789)
T PRK08447 2 ITVVKRNGRIEPLDISKIQKYTSDAVEGLE--GVSQSELEVDAKIQFRDGITTEEIQQTLIKTAVDKIDIDRPNWTFVAA 79 (789)
T ss_pred ceEEeeCCccccCCHHHHHHHHHHHhcCCc--cCCHHHHHHHHHhhccCCCCHHHHHHHHHHHHHHhCCccCccHHHHHH
Confidence 579999999999999999999999999996 499999999999999999999999999999999999 59999999999
Q ss_pred HHHHHHHHHHhh--hhhhHHHHHHHHhhhhccCCcccCcChHHHHHHHhcHHHHHHhhcccccCCCChhhHHHHHHhhcc
Q 003561 80 RIAVSNLHKNTK--KSFSETIKDMYNHYNERSGLKAPLIADDIYEIIMKNAACLDSEIIYDRDFDYDYFGFKTLERSYLL 157 (811)
Q Consensus 80 rl~~~~l~k~~~--~~~~~~~~~l~~~~~~~~~~~~~l~~~~~~~~~~~~~~~l~~~i~~~rd~~~~y~g~~~l~~~Yl~ 157 (811)
||++.+|||++. ..| ..++.++. .+...+.+...+++ ..++++|+++|+++||+.|+|+|+++|+++||+
T Consensus 80 Rl~~~~l~k~~~~~~~~----~~~~~~~~--~~~~~~~~~~~~~~--~~~~~~l~~~i~~~rd~~f~y~g~~~l~~rYll 151 (789)
T PRK08447 80 RLFLYDLYHKVSGFTGY----NHLKEYFE--KGEKEGRILLGLKE--KYDLDDLNAYIKPERDLQFNYLGIKTLYDRYLI 151 (789)
T ss_pred HHHHHHHHHHhhccccH----HHHHHHHH--HHhhcCccchhhhc--cccHHHHHHHhCHHHhcCCCHHHHHHHHHhhCc
Confidence 999999999994 333 23333321 23333455555542 247999999999999999999999999999999
Q ss_pred cc-CCcccCCHHHHHHHHHhHhccC---CHHHHHHHHHHHhcCcEecccccccccCCCCCCCCccccccccCCCHHHHHH
Q 003561 158 KV-QGKVVERPQHMLMRVSIGIHKD---DIDSAIKTYHMMSQRWFTHASPTLFNAGTPRPQLSSCFLVCMKDDSIEGIYE 233 (811)
Q Consensus 158 k~-~g~~~E~pq~~~~RvA~~l~~~---~~~~~~~~y~~ls~~~~~~atP~l~naGt~~~~lsSCfl~~~~~Ds~~~I~~ 233 (811)
|. +|+++|+||++|||||++||.. +.+++++||++||+++|+||||||+|||++++|||||||+.+ +||++||++
T Consensus 152 k~~~g~~~E~pq~~~mrVA~~la~~e~~~~~~a~~fy~~ls~~~~~~aTPtL~Nagt~~~qlsSCFl~~v-~Dsl~~I~~ 230 (789)
T PRK08447 152 KDRNNNPIELPQHMFMAIAMFLAQNELDPQKWAKKFYDVISKFEVMLATPTLSNARTTRHQLSSCYIGST-PDNIEGIFD 230 (789)
T ss_pred cCCCCCEeeCHHHHHHHHHHHHHhhccccHHHHHHHHHHHHcCCeecCCccccccCCCCCCeeeeEeCCC-CCCHHHHHH
Confidence 94 6888999999999999999974 457899999999999999999999999999999999999886 899999999
Q ss_pred HHHHHHHHHHhcCCcceeeceecCCCCcccCCCCccCCcccHHHHHHHHHHHHhhCCCccccceEeeccCCcccHHHHHH
Q 003561 234 TLKECAVISKSAGGIGVSVHNIRATGSYIRGTNGTSNGIVPMLRVFNDTARYVDQGGGKRKGAFAVYLEPWHADIFEFLN 313 (811)
Q Consensus 234 ~~~~~a~isk~ggGvG~~~s~iR~~Gs~I~g~~g~ssG~vp~lk~~~~~~~~v~QgG~~R~ga~~vyl~~wH~DI~~Fl~ 313 (811)
++++++++||.|||||+|+|+|||+||+|+|++|.|+|||||||+||+++.+|+||| +|+||+|+||++|||||++||+
T Consensus 231 ~~~~~a~isk~gGGiG~~~s~iR~~Gs~I~g~~g~ssGvvp~~k~~n~~~~~v~QgG-~RrGA~avyL~~wHpDI~~FL~ 309 (789)
T PRK08447 231 SYKEMALLSKYGGGIGWDWSKVRAMGSYIDGHKNAAGGIIPFLKITNDIAIAVDQLG-TRKGAIAVYLEPWHMDISDFID 309 (789)
T ss_pred HHHHHHHHHhcCCeEeecccccCCCCCccCCCCCCCCChhhHHHHHHHHHHHHHhCC-ccccceEEEEeCCCccHHHHHH
Confidence 999999999999999999999999999999999999999999999999999999999 8999999999999999999999
Q ss_pred hhhcCCcccccccccceecccCHHHHHHHHcCCceEEecCCCCCcchhhhhhHHHHHHHHHHhc-CceeEEEeHHHHHHH
Q 003561 314 LKKNHGKEEHRARDLFYALWVPDLFMERVQTNGQWSLFCPNEASGLADCWGAEFEKLYTHYERE-GKAKKVVQAQNLWFE 392 (811)
Q Consensus 314 ~K~~~g~e~~r~~~l~~sv~ipD~Fm~rv~~~~~W~Lf~P~~~~~L~~~yg~eF~~~Y~~~e~~-~~~~~~v~Ar~L~~~ 392 (811)
+|+++|++++|++++|+||||||+||+||++|++|+||+|+++++|.+.||++|++.|.+||++ +..+++|+||+||++
T Consensus 310 ~K~~~g~e~~r~~~l~~sv~ipD~FM~~v~~d~~w~Lf~P~~~~~l~~~yG~~f~~~Y~~~e~~~~~~~~~V~AreLw~~ 389 (789)
T PRK08447 310 LRKNSGEERRRAHDLFPALWINDLFMKRVEEDAMWTLFDPYECKDLTELYGEEFEKRYLEYEKDEKIIKEYINAKELWKK 389 (789)
T ss_pred HhhcccchhhhhhcCeeeeeeCHHHHHHHHcCCCEEEecCCccchhhhhhChHHHHHHHHHHhccCeeeEEEeHHHHHHH
Confidence 9999999999999999999999999999999999999999999999999999999999999984 567899999999999
Q ss_pred HHHHHHhhCCceeEehhhhhhhcCCCCCCceeeecCCccccccCCCC---------------------------------
Q 003561 393 ILTSQIETGTPYMLFKDTCNRKSNQQNLGTIKSSNLCTEIIEYTSPT--------------------------------- 439 (811)
Q Consensus 393 I~~~~~etG~P~i~f~D~~Nr~~~~~~~g~I~~sNlC~EI~~~~~~~--------------------------------- 439 (811)
|++++|+||+|||+|+|++||+||++|.|+|++||||+||+|+++|+
T Consensus 390 I~~~~~eTG~Pyi~f~D~~Nr~np~~~~G~I~~SNlC~EI~q~~~p~~~~~~~~~~~~~~~~y~~~~~~~~~~~~~~~~~ 469 (789)
T PRK08447 390 ILTNYFETGLPFLCFKDNANRANPNAHAGIIRSSNLCTEIFQNTAPNHYKIKIEFEDGSIEFFEEEELVTVDSGITKKAK 469 (789)
T ss_pred HHHHHHHHCCceEEEhhhhhhcCCCCCCCeeeecccccccCCCCCccccccccccccccccccccccccccccccccccc
Confidence 99999999999999999999999999999999999999999988773
Q ss_pred -----------------------cceeEEecccccchhcccCCCCCCCCCccccccCCCCCccCCHHHHHHHHHHHHHHH
Q 003561 440 -----------------------ETAVCNLASIALPRFVREKDVPVESHPSRIVGSRGSKNRFFDFEKLAEVTAIVTENL 496 (811)
Q Consensus 440 -----------------------e~~~CNL~SInL~~~v~~~~~~~~~~~~~~~g~~~~~~~~fD~~~L~~~v~~avr~L 496 (811)
++++|||+||||++|+ |+++|+++|+++||+|
T Consensus 470 ~~~~~~~~~~~~~~~~~~~~~~ge~~vCNLgSiNL~~~v-------------------------~~~~l~~~v~~avR~L 524 (789)
T PRK08447 470 KITSLDSLKGKKIYIVEKEKKDGKTAVCNLASINLSKIN-------------------------TKEDIERVVPIAIRML 524 (789)
T ss_pred ccccccccccccccccccccCCCCeeEEecHHHHHHHhc-------------------------CHHHHHHHHHHHHHHH
Confidence 6699999999999986 3588999999999999
Q ss_pred HHHHhcCCCcHHHHHHHhhccCCeeeecchHHHHHHHcCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCCCC
Q 003561 497 NKIIDVNYYPVETARRSNLRHRPIGIGVQGLADTFILLGMAFESPEAQQLNKDIFETIYYHALKTSSEIAAKEGPYETYH 576 (811)
Q Consensus 497 D~vId~~~~p~~~~~~~~~~~R~iGlGv~Glad~L~~~gi~y~S~ea~~l~~~i~e~i~~~a~~aS~eLAke~G~~~~f~ 576 (811)
|+|||+|.||+|+++++|+++|+||||+|||||+|+++||+|+|+||++|+++|||+|+|+|++||++||+|+|+||.|+
T Consensus 525 DnVID~n~yP~~~~~~~n~~~R~IGLGvmGlad~La~lgi~Y~S~eA~~~~~~i~e~i~y~A~~aS~eLAkErG~fp~f~ 604 (789)
T PRK08447 525 DNVIDLNFYPNRKVKATNLKSRAIGLGVMGEAQMLAEHKIAWGSKEHLEKIDEIMEQISYNAIDASSNLALEKGVYPDFE 604 (789)
T ss_pred HHHHhcccCChHHHHHHHhcCCCeeeeHHHHHHHHHHCCCCcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCCcC
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCccccCCCCccccccCCC----------CcccHHHHHHHHHhcCccccceeccCCCCccccccCCCccccccccceeEE
Q 003561 577 NSPVSKGILQPDMWNVIPS----------DRWDWGVLRDMISKNGVRNSLLVAPMPTASTSQILGNNECFEPYTSNIYSR 646 (811)
Q Consensus 577 ~S~~~~G~l~~d~~~~~~~----------~~~dW~~Lr~~i~~~G~RNs~l~AiaPT~stS~i~g~s~gieP~~s~~y~r 646 (811)
+|+|++|+|++|.|+..+. ..++|++||++|++||+|||+++|||||+|||+|+|+|+||||++++.|.|
T Consensus 605 ~S~~~~G~~~~d~~~~~~~~~~~~~~~~~~~~dW~~L~~~I~k~GlRNs~l~AiAPTgS~S~i~g~S~gIEP~~s~~~~~ 684 (789)
T PRK08447 605 GSNWSKGIFPIDKANEEAKKLVERGGLFDSACDWEGLREKVKKDGMRNGYLMAIAPTSSISILVGTTQTIEPVYKRKWFE 684 (789)
T ss_pred cChhhcCccchhhhhchhhhhhcccccccchhhHHHHHHHHHHhCccccceeeeCChHHHHHHhCCCcCcCcccchheeE
Confidence 9999999999998875421 246999999999999999999999999999999999999999999999999
Q ss_pred EcccCceEEeChHHHHHHHHcCCCcHHHhhhhhccCCcccccCCCchHHHhhhhhhccCChHHHHHHHHHhccccccccc
Q 003561 647 RVLSGEFVVVNKHLLHDLTEMGIWSPTIKNKIIYDDGSVQKIPEIPEELKMIYKTVWEIKQMTLVDMAVDRGCYIDQSQS 726 (811)
Q Consensus 647 ~~~~g~~~~vn~~l~~~l~~~g~~~~~~~~~i~~~~Gsv~~i~~~p~~~k~~f~ta~ei~~~~~i~~~a~~Q~~vDqs~S 726 (811)
++.+|+|+++|++|. +++.++|+|||||+|+++|+|+|+||||||||||
T Consensus 685 ~~~~g~~~~~~p~L~-------------------------------~~~~~~y~tA~ei~~~~~I~~~A~rQk~IDQsiS 733 (789)
T PRK08447 685 ENLSGLIPVVVPNLS-------------------------------PETWQYYTPAYDLDQKDLIKAAAVRQKWIDQGQS 733 (789)
T ss_pred EeccceeEeeCCCCC-------------------------------hHHHHHhchHHhCCHHHHHHHHHHHhcccchhhc
Confidence 999999999888662 3345689999999999999999999999999999
Q ss_pred eeEeeC--CCCHHHHHHHHHHHHHcCCceEEEEecCcccccc
Q 003561 727 LNIHMD--QPNFKKVTSLHFRTWSRGLKTGMYYLRSRAAADA 766 (811)
Q Consensus 727 ~~l~~~--~~~~~~l~~~~~~Awk~GlKt~~YY~r~~~~~~~ 766 (811)
+|||++ .++.++|.++|++|||+|||| +||+|+++....
T Consensus 734 ~nl~~~~~~~t~~~l~~~y~~Awk~GlKt-~YY~Rt~~~~~~ 774 (789)
T PRK08447 734 LNIFLSLDKASGKYLNEIYTLAWKLGLKS-TYYLRSESPESE 774 (789)
T ss_pred CccccCCCCCCHHHHHHHHHHHHHcCCCE-EEEEeccchhhc
Confidence 999998 368999999999999999999 899999886644
No 7
>PHA02572 nrdA ribonucleoside-diphosphate reductase subunit alpha; Provisional
Probab=100.00 E-value=5.4e-182 Score=1597.89 Aligned_cols=701 Identities=29% Similarity=0.499 Sum_probs=657.5
Q ss_pred CeEEecCCceeecChHHHHHHHHHHHccCCCCCCCHHHHHHHHHhhcCCCCCHHHHHHHHHHHHHhhcc-CCCChHHHHH
Q 003561 1 MYVVKRDGRQEAVHFDKITARLKKLSYGLSTEHCDPVLVSQKVCAGVYKGVTTSQLDELAAETAAAMTT-NHPDYASLAA 79 (811)
Q Consensus 1 ~~V~KrdG~~e~~~~~ki~~~i~~~~~~l~~~~v~~~~i~~~~~~~l~~gitt~ei~~~~~~~a~~~~~-~~p~y~~lA~ 79 (811)
|+|+||||+.|+|+++||+++|+++|+|++ ||+++|+.++..++++||||+||+++++++|++|++ .||||++|||
T Consensus 4 ~~v~kr~G~~e~~~~~k~~~~~~~~~~~~~---~~~~~l~~~~~~~~~~~~~~~e~~~~~~~~a~~~~~~~~pdy~~~Aa 80 (753)
T PHA02572 4 INVIKSSGVSQPFDLEKIHKVLEWACEGTG---VDPSELEENSKIQLRDGMTTKDIQEILIKSAADLISVEEPDYQYVAA 80 (753)
T ss_pred eEEEeeCCccccCCHHHHHHHHHHHhcCCC---CCHHHHHHHHHhhccCCCCHHHHHHHHHHHHHHhCCccCccHHHHHH
Confidence 579999999999999999999999999965 899999999999999999999999999999999996 9999999999
Q ss_pred HHHHHHHHHHhhhhhhHHHHHHHHhhhhccCCcccCcChHHHH-HHHhcHHHHHHhhcccccCCCChhhHHHHHHhhccc
Q 003561 80 RIAVSNLHKNTKKSFSETIKDMYNHYNERSGLKAPLIADDIYE-IIMKNAACLDSEIIYDRDFDYDYFGFKTLERSYLLK 158 (811)
Q Consensus 80 rl~~~~l~k~~~~~~~~~~~~l~~~~~~~~~~~~~l~~~~~~~-~~~~~~~~l~~~i~~~rd~~~~y~g~~~l~~~Yl~k 158 (811)
||++++|||+++++|.. ..+.+++. .++..+++++++++ |+.+++++|+++|+|+||+.|+|+|+++|+++||+|
T Consensus 81 Rl~~~~l~k~~~~~~~~--~~~~~~~~--~~~~~~~~~~~~~~~y~~~~~~~l~~~i~~~rd~~f~y~g~~~l~~rYllk 156 (753)
T PHA02572 81 RLLMFALRKQVYGQFEP--PSFIDHIS--KCVNEGKYDPEILSKYSAEEITYLESFIDHDRDFEFTYAGAMQLKEKYLVQ 156 (753)
T ss_pred HHHHHHHHHHHhcccch--hhHHHHHH--HHHhcCchhHHHHHHcCHHHHHHHHHhhchhhccCCCHHHHHHHHHhhCCc
Confidence 99999999999988742 22332221 24455789999987 779999999999999999999999999999999999
Q ss_pred c--CCcccCCHHHHHHHHHhHhccC-----CHHHHHHHHHHHhcCcEecccccccccCCCCCCCCccccccccCCCHHHH
Q 003561 159 V--QGKVVERPQHMLMRVSIGIHKD-----DIDSAIKTYHMMSQRWFTHASPTLFNAGTPRPQLSSCFLVCMKDDSIEGI 231 (811)
Q Consensus 159 ~--~g~~~E~pq~~~~RvA~~l~~~-----~~~~~~~~y~~ls~~~~~~atP~l~naGt~~~~lsSCfl~~~~~Ds~~~I 231 (811)
. +|+++|+||++|||||++||.. +++++++||++||+++|+||||||+||||+++|||||||+++ +||++||
T Consensus 157 ~~~~~~~~E~pq~~~~rVA~~la~~e~~~~r~~~a~~fy~~ls~~~~~paTPtl~naGt~~~qlsSCFl~~v-~Dsl~~I 235 (753)
T PHA02572 157 DRSTGEIYETPQFAYMLIAMALHQDEPKEDRLEHVIRFYNAVSTRKISLPTPIMAGVRTPTRQFSSCVVIES-GDSLDSI 235 (753)
T ss_pred CCCCCceecCHHHHHHHHHHHHHhhccccchHHHHHHHHHHHHcCCcCCCChhhhcCCCCCCcccceeeCCC-CCCHHHH
Confidence 4 4778999999999999999974 377899999999999999999999999999999999999997 8999999
Q ss_pred HHHHHHHHHHHHhcCCcceeeceecCCCCcccCCCCccCCcccHHHHHHHHHHHHhhCCCccccceEeeccCCcccHHHH
Q 003561 232 YETLKECAVISKSAGGIGVSVHNIRATGSYIRGTNGTSNGIVPMLRVFNDTARYVDQGGGKRKGAFAVYLEPWHADIFEF 311 (811)
Q Consensus 232 ~~~~~~~a~isk~ggGvG~~~s~iR~~Gs~I~g~~g~ssG~vp~lk~~~~~~~~v~QgG~~R~ga~~vyl~~wH~DI~~F 311 (811)
++++++++.+.+.|||||+|+|+|||+|++|+|++|+|+|+|||||+||+++++|+||| +|+||+|+||++|||||++|
T Consensus 236 ~~~~~~~a~~~sk~gGiG~~~s~iR~~Gs~I~g~~g~ssG~vp~lk~~d~~~~~v~QgG-~R~GA~~vyL~~wHpDI~~F 314 (753)
T PHA02572 236 NKTAMAIVKYISKRAGIGINAGMIRAEGSKIRGGEVRHTGVIPFWKHFQTAVKSCSQGG-IRGGAATAYYPIWHLEVEDL 314 (753)
T ss_pred HHHHHHHHHHHHhCCeEEeeccccCCCCCccCCCCCCCCChhhHHHHHHHHHHHHhcCC-cccCceEEEEeCCCcCHHHH
Confidence 99999999766667899999999999999999999999999999999999999999999 89999999999999999999
Q ss_pred HHhhhcCCcccccccccceecccCHHHHHHHHcCCceEEecCCCCCc-chhhh---hhHHHHHHHHHHhcC-ceeEEEeH
Q 003561 312 LNLKKNHGKEEHRARDLFYALWVPDLFMERVQTNGQWSLFCPNEASG-LADCW---GAEFEKLYTHYEREG-KAKKVVQA 386 (811)
Q Consensus 312 l~~K~~~g~e~~r~~~l~~sv~ipD~Fm~rv~~~~~W~Lf~P~~~~~-L~~~y---g~eF~~~Y~~~e~~~-~~~~~v~A 386 (811)
|++|+++|+++.|++++|+||||||+||+||++|++|+||+|+++++ |.+.| |++|+++|++||+++ ..+++|+|
T Consensus 315 L~~K~~~g~e~~r~~~l~~~v~ipD~Fm~~v~~~~~w~Lf~P~~~~~~l~~~~~~~~~ef~~~Y~~~e~~~~~~~~~v~A 394 (753)
T PHA02572 315 LVLKNNKGVEENRIRHLDYGVQINDLMYERFIKNDYITLFSPHDVGGELYDAYFADQDRFRELYEALEKDPSVRKKRIKA 394 (753)
T ss_pred HHHhcccCcchhhhhhhhhHhhcCHHHHHHHHcCCCEEEeCCccCccchhhhhccchhHHHHHHHHHHhcccceeEEEeH
Confidence 99999999999999999999999999999999999999999999998 99999 599999999999975 56899999
Q ss_pred HHHHHHHHHHHHhhCCceeEehhhhhhhcCCCCCCceeeecCCccccccCCC-------CcceeEEecccccchhcccCC
Q 003561 387 QNLWFEILTSQIETGTPYMLFKDTCNRKSNQQNLGTIKSSNLCTEIIEYTSP-------TETAVCNLASIALPRFVREKD 459 (811)
Q Consensus 387 r~L~~~I~~~~~etG~P~i~f~D~~Nr~~~~~~~g~I~~sNlC~EI~~~~~~-------~e~~~CNL~SInL~~~v~~~~ 459 (811)
|+||++|++++|+||+|||+|+|++|+++|+ .|+|++||||+||+||+.| +|+++|||+||||++|
T Consensus 395 reLw~~I~~~~~etG~Pyi~f~D~~N~~~~~--~g~I~~SNlC~Ei~l~~~~~~~~d~~~e~~~CNL~SINL~~~----- 467 (753)
T PHA02572 395 QELFLLLLKERSETGRIYIMFIDHCNNHSPF--KDPIRQSNLCCEIALPTKPLNHIDGEGEIALCTLSAIVLGNF----- 467 (753)
T ss_pred HHHHHHHHHHHhccCCcceEeehhhhhcCcc--cCceeecCCCccccCCCCccccccCCCceEEEECHHHHHHHh-----
Confidence 9999999999999999999999999999998 7999999999999999987 8899999999999998
Q ss_pred CCCCCCCccccccCCCCCccCCHHHHHHHHHHHHHHHHHHHhcCCCcHHHHHHHhhccCCeeeecchHHHHHHHcCCCCC
Q 003561 460 VPVESHPSRIVGSRGSKNRFFDFEKLAEVTAIVTENLNKIIDVNYYPVETARRSNLRHRPIGIGVQGLADTFILLGMAFE 539 (811)
Q Consensus 460 ~~~~~~~~~~~g~~~~~~~~fD~~~L~~~v~~avr~LD~vId~~~~p~~~~~~~~~~~R~iGlGv~Glad~L~~~gi~y~ 539 (811)
|||+.|+++|+++||+||+|||.+.||++++ ++++++|+||||+|||||+|+++|++|+
T Consensus 468 --------------------~D~~~l~~~v~~avr~LDnVID~~~yP~~~~-~~~~~~R~IGLGv~Glad~L~~lgi~Y~ 526 (753)
T PHA02572 468 --------------------EDQDEIEELAEVAVRALDNLLDYQDYPVPAA-LKAKKRRSLGVGVTNYAHYLAKNFASYE 526 (753)
T ss_pred --------------------cCHHHHHHHHHHHHHHHHHHHhccCCChHHH-HhhhhcCccccchhHHHHHHHHCCCCcC
Confidence 4789999999999999999999999999999 9999999999999999999999999999
Q ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCCCCCCccccCCCCccccccCCC------CcccHHHHHHHHHhcCcc
Q 003561 540 SPEAQQLNKDIFETIYYHALKTSSEIAAKEGPYETYHNSPVSKGILQPDMWNVIPS------DRWDWGVLRDMISKNGVR 613 (811)
Q Consensus 540 S~ea~~l~~~i~e~i~~~a~~aS~eLAke~G~~~~f~~S~~~~G~l~~d~~~~~~~------~~~dW~~Lr~~i~~~G~R 613 (811)
|+|| +|+++|||+|+|+|++||++||||+|+||.|++|+|++|+|++|.|+..+. ..+||++||++|++||+|
T Consensus 527 S~eA-~l~~~i~e~i~~~A~~aS~eLAkE~G~~p~f~~S~~~~G~~~~~~~~~~~~~~~~~~~~~dW~~L~~~i~~~GlR 605 (753)
T PHA02572 527 DANA-DLVHELFERLQYYLIKASNKLAKEKGACEYFSDTKYSRGELPIDWYKKKVDELVAPKYNCDWESLREDLKKYGIR 605 (753)
T ss_pred CHHH-HHHHHHHHHHHHHHHHHHHHHHHHhCCCCCcCcChhhcccchhhcccchhhhhcccchhhhHHHHHHHHHHhCcc
Confidence 9999 999999999999999999999999999999999999999999999876432 247999999999999999
Q ss_pred ccceeccCCCCccccccCCCccccccccceeEEEcccCceEEeChHHHHHHHHcCCCcHHHhhhhhccCCcccccCCCch
Q 003561 614 NSLLVAPMPTASTSQILGNNECFEPYTSNIYSRRVLSGEFVVVNKHLLHDLTEMGIWSPTIKNKIIYDDGSVQKIPEIPE 693 (811)
Q Consensus 614 Ns~l~AiaPT~stS~i~g~s~gieP~~s~~y~r~~~~g~~~~vn~~l~~~l~~~g~~~~~~~~~i~~~~Gsv~~i~~~p~ 693 (811)
||+++|||||+|||+|+|+|+||||+|+++|.|++.+|+|+++||++ +
T Consensus 606 Ns~l~AiaPT~S~S~i~g~s~giEP~~s~~~~r~~~~G~~~~~~p~l--------------------------------~ 653 (753)
T PHA02572 606 NSTLSALMPCESSSQVSNSTNGIEPPRGPVSIKKSKEGPFNQVVPNV--------------------------------E 653 (753)
T ss_pred ccceeeeCCcHHHHHHhCCCCccCcccccEEEEEecCceEEEeCCCH--------------------------------H
Confidence 99999999999999999999999999999999999999999998876 2
Q ss_pred HHHhhhhhhccC---ChHHHHHHHHHhccccccccceeEeeCCC-------CHHHHHHHHHHHHHcCCceEEEEecCccc
Q 003561 694 ELKMIYKTVWEI---KQMTLVDMAVDRGCYIDQSQSLNIHMDQP-------NFKKVTSLHFRTWSRGLKTGMYYLRSRAA 763 (811)
Q Consensus 694 ~~k~~f~ta~ei---~~~~~i~~~a~~Q~~vDqs~S~~l~~~~~-------~~~~l~~~~~~Awk~GlKt~~YY~r~~~~ 763 (811)
+++++|+||||| +|+++|+|||+||||||||||+|||+.++ +.++|.++|++|||+|||| +||+||+++
T Consensus 654 ~~~~~ykta~~i~~~~~~~~i~~~A~rq~~IDQsqS~nl~~~~~~~~~~~~~~~~l~~~~~~Aw~~GlKT-~YY~rt~~~ 732 (753)
T PHA02572 654 TLKDLYDLLWDLAKKGNKGYLTQVAIMQKFVDQAISANTSYDPENYPNGKVPMSVMLDDLLYFYYYGGKT-LYYHNTRDG 732 (753)
T ss_pred HHHHHHHhHHHhcccChHHHHHHHHHHhccCchhhcceeeecCCcCcccccCHHHHHHHHHHHHHhCCce-EeecCcccc
Confidence 345689999999 99999999999999999999999998643 5689999999999999999 899999999
Q ss_pred ccccccccc
Q 003561 764 ADAIKFTVD 772 (811)
Q Consensus 764 ~~~~~~~~~ 772 (811)
++++...|.
T Consensus 733 ~~~~~~~~~ 741 (753)
T PHA02572 733 KGTEDYEIE 741 (753)
T ss_pred ccccccccc
Confidence 999877654
No 8
>PRK07088 ribonucleotide-diphosphate reductase subunit alpha; Validated
Probab=100.00 E-value=1.6e-181 Score=1593.43 Aligned_cols=693 Identities=33% Similarity=0.537 Sum_probs=646.4
Q ss_pred CeEEecCCceeecChHHHHHHHHHHHccCCCCCCCHHHHHHHHHhhcCCCCCHHHHHHHHHHHHHhh-------------
Q 003561 1 MYVVKRDGRQEAVHFDKITARLKKLSYGLSTEHCDPVLVSQKVCAGVYKGVTTSQLDELAAETAAAM------------- 67 (811)
Q Consensus 1 ~~V~KrdG~~e~~~~~ki~~~i~~~~~~l~~~~v~~~~i~~~~~~~l~~gitt~ei~~~~~~~a~~~------------- 67 (811)
|+|+||||+.|+|+++||.++|+++|+||+. +|+.++..++..++++||||+||++++|++|++|
T Consensus 3 ~~v~k~~g~~~~~~~~k~~~~~~~~~~~l~~--~~~~~~~~~~~~~~~~~~t~~e~~~~~~~~a~~~~~~~~~~~~~~~~ 80 (764)
T PRK07088 3 IKIKKRDGQYEPLQVEKTKKMVKLACEGLYG--CDPLELELDSRIQFRDGMTTKEIQKSLIQTAIEKVIQNSKDNNGNNT 80 (764)
T ss_pred eEEEeeCCccccCCHHHHHHHHHHHhcCCcc--CCHHHHHHHHHhccCCCCCHHHHHHHHHHHHHHhccccccccccccC
Confidence 5799999999999999999999999999964 9999999999999999999999999999999999
Q ss_pred ccCCCChHHHHHHHHHHHHHHHhhhhh--hHH-HHHHHHhhhhccCCcccCcChHHHH-HHHhcHHHHHHhhcccccCCC
Q 003561 68 TTNHPDYASLAARIAVSNLHKNTKKSF--SET-IKDMYNHYNERSGLKAPLIADDIYE-IIMKNAACLDSEIIYDRDFDY 143 (811)
Q Consensus 68 ~~~~p~y~~lA~rl~~~~l~k~~~~~~--~~~-~~~l~~~~~~~~~~~~~l~~~~~~~-~~~~~~~~l~~~i~~~rd~~~ 143 (811)
+..||||+.+||||++.+|||++.+.| ... +.+++.++. .++..+++++++++ ++.+++++|+++|+++||+.|
T Consensus 81 ~~~~p~~~~~Aarl~~~~l~k~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~y~~~~~~~l~~~i~~~rd~~~ 158 (764)
T PRK07088 81 KKTNPNWQYVAARLYVFDLYKEARINRHYNSFGYGDYYELVK--KLVEEKLYGEYLLQNYSKEEIKELEKYIKPERDFLF 158 (764)
T ss_pred CccCccHHHHHHHHHHHHHHHHHHhcccccccchhhHHHHHH--HHHhcchhhHHHHHhcCHHHHHHHHHHhhhccccCC
Confidence 569999999999999999999997543 111 334444442 35556789999987 779999999999999999999
Q ss_pred ChhhHHHHHHhhccc-cCCcccCCHHHHHHHHHhHhcc-----CCHHHHHHHHHHHhcCcEecccccccccCCCCCCCCc
Q 003561 144 DYFGFKTLERSYLLK-VQGKVVERPQHMLMRVSIGIHK-----DDIDSAIKTYHMMSQRWFTHASPTLFNAGTPRPQLSS 217 (811)
Q Consensus 144 ~y~g~~~l~~~Yl~k-~~g~~~E~pq~~~~RvA~~l~~-----~~~~~~~~~y~~ls~~~~~~atP~l~naGt~~~~lsS 217 (811)
+|+|+++|+++||+| .+|.++|+||++|||||++||. .+.+++++||++||+++|+||||||+|+||+++||||
T Consensus 159 ~y~g~~~l~~rYllk~~~~~~~E~pq~~~~rVA~~la~~e~~~~~~~~a~~fy~~ls~~~~~paTPtl~NaGt~~~qlsS 238 (764)
T PRK07088 159 NYEGLKLLADRYLVKGFNREILELPQERFMGIAMHLAIPEGKEKRVYYAKKFYDLLSELKATVATPTLSNAGTPFYQLSS 238 (764)
T ss_pred CHHHHHHHHHhhCccCCCCCEeeCHHHHHHHHHHHHhhhcccccHHHHHHHHHHHHHcCCeecCCcchhcCCCCCCCccc
Confidence 999999999999999 4788999999999999999996 3478899999999999999999999999999999999
Q ss_pred cccccccCCCHHHHHHHHHHHHHHHHhcCCcceeeceecCCCCcccCCCCccCCcccHHHHHHHHHHHHhhCCCccccce
Q 003561 218 CFLVCMKDDSIEGIYETLKECAVISKSAGGIGVSVHNIRATGSYIRGTNGTSNGIVPMLRVFNDTARYVDQGGGKRKGAF 297 (811)
Q Consensus 218 Cfl~~~~~Ds~~~I~~~~~~~a~isk~ggGvG~~~s~iR~~Gs~I~g~~g~ssG~vp~lk~~~~~~~~v~QgG~~R~ga~ 297 (811)
|||+++ +||++||+++++++|+++|.|||||+++|+|||+||+|+|++|.|+|+|||||+||+++.+|+||| +|+||+
T Consensus 239 CFl~~v-~Dsl~~I~~~~~~~a~isk~gGGiG~~~s~iR~~Gs~I~g~~g~ssGvvp~lk~~n~~~~~v~QgG-~R~GA~ 316 (764)
T PRK07088 239 CFISVV-DDNLWSIYDVNQKFAQVSKHGGALGIYTGKIRALNSEIRGFKNASGGVIPWIKLYNDTAIAVDQLG-KRKGGA 316 (764)
T ss_pred eeecCc-cccHHHHHHHHHHHHHHHhhCCeEEecccccCCCCCcccCCCCCCCChhhHHHHHHHHHHHHHhCC-ccccce
Confidence 999986 899999999999999999999999999999999999999999999999999999999999999999 899999
Q ss_pred EeeccCCcccHHHHHHhhhcCCcccccccccceecccCHHHHHHHHcCCceEEecCCCCC-----cchhhhhh----HHH
Q 003561 298 AVYLEPWHADIFEFLNLKKNHGKEEHRARDLFYALWVPDLFMERVQTNGQWSLFCPNEAS-----GLADCWGA----EFE 368 (811)
Q Consensus 298 ~vyl~~wH~DI~~Fl~~K~~~g~e~~r~~~l~~sv~ipD~Fm~rv~~~~~W~Lf~P~~~~-----~L~~~yg~----eF~ 368 (811)
|+||++|||||++||++|+++|++++|++++|+||||||+||+||++|++|+||+|+++| +|.+.||+ +|+
T Consensus 317 avyL~~wHpDI~~FL~lK~~~g~e~~r~~~l~~~v~ipD~FM~~v~~d~~w~Lf~P~~~~~~~g~~L~d~yg~~~~~ef~ 396 (764)
T PRK07088 317 AITLDIWHKDIPEFLDLKTNNGDDRRKAHDIFPGVSYPDLFMKRLEKRENWSLFDPHEIKKVKGYSLEDYYDEEDRKEFT 396 (764)
T ss_pred eEEEeCCCccHHHHHHhccccchhHHHHhhChhhhccCHHHHHHHHcCCCeEEECccccccccCccHHHHhccchhhhHH
Confidence 999999999999999999999999999999999999999999999999999999999998 69999999 999
Q ss_pred HHHHHHHhc-CceeEEEeHHHHHHHHHHHHHhhCCceeEehhhhhhhcCCCCCCceeeecCCccccccCCCC--------
Q 003561 369 KLYTHYERE-GKAKKVVQAQNLWFEILTSQIETGTPYMLFKDTCNRKSNQQNLGTIKSSNLCTEIIEYTSPT-------- 439 (811)
Q Consensus 369 ~~Y~~~e~~-~~~~~~v~Ar~L~~~I~~~~~etG~P~i~f~D~~Nr~~~~~~~g~I~~sNlC~EI~~~~~~~-------- 439 (811)
++|++||++ +..+++|+||+||++|++++|+||+|||+|+|++||+||++|.|+|++||||+||+||++|+
T Consensus 397 ~~Y~~~~~~~~~~~~~v~AreLw~~I~~~~~eTG~Pyi~f~D~~Nr~np~~~~G~I~~SNlCtEI~q~~~~~~~~~~~~~ 476 (764)
T PRK07088 397 KKYLECEEDTNIPRRTVPVLDIMKKIMKSAVETGTPFIFFRDTVNKANPNKHKGMIYSSNLCHEIAQNMSESELLEEEII 476 (764)
T ss_pred HHHHHHHhcccceeEEEeHHHHHHHHHHHHHHhCCCeEEeHHHHhhcCCCCCCCeeeecCCchHhhccCCcccccccccc
Confidence 999999984 66789999999999999999999999999999999999999999999999999999998774
Q ss_pred ---------------cceeEEecccccchhcccCCCCCCCCCccccccCCCCCccCCHHHHHHHHHHHHHHHHHHHhcCC
Q 003561 440 ---------------ETAVCNLASIALPRFVREKDVPVESHPSRIVGSRGSKNRFFDFEKLAEVTAIVTENLNKIIDVNY 504 (811)
Q Consensus 440 ---------------e~~~CNL~SInL~~~v~~~~~~~~~~~~~~~g~~~~~~~~fD~~~L~~~v~~avr~LD~vId~~~ 504 (811)
++++|||+||||++ |||+.|+++|+++||+||+|||++.
T Consensus 477 ~~~~~~~~~~~~~~g~~~vCNL~SinL~~--------------------------~d~~~l~~~v~~avr~LDnVID~n~ 530 (764)
T PRK07088 477 DENGYYEVVQKIKAGDMVTCNLNSIVLGN--------------------------VDDEELEEVIPTQIRMLDNVISLNY 530 (764)
T ss_pred cccccccccccccCCCceEEEcHHHHHhh--------------------------hcHHHHHHHHHHHHHHHHHHHhcCC
Confidence 34899999999976 4678999999999999999999999
Q ss_pred CcHHHHHHHhhccCCeeeecchHHHHHHHcCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCCCCCCccccCC
Q 003561 505 YPVETARRSNLRHRPIGIGVQGLADTFILLGMAFESPEAQQLNKDIFETIYYHALKTSSEIAAKEGPYETYHNSPVSKGI 584 (811)
Q Consensus 505 ~p~~~~~~~~~~~R~iGlGv~Glad~L~~~gi~y~S~ea~~l~~~i~e~i~~~a~~aS~eLAke~G~~~~f~~S~~~~G~ 584 (811)
||+|+++++|+++|+||||||||||+|+++|++|+|+||++|+++|||+|+|+|++||++||+|+|+||.|++|+|++|.
T Consensus 531 yP~~~a~~~n~~~R~IGLGvmGlad~La~lgi~Y~S~eA~~l~~~i~e~i~~~A~~aS~eLAkE~G~yp~f~~S~~~~g~ 610 (764)
T PRK07088 531 YPVPEAEITSDKYRAIGLGTSGYHHMLANNKIRWESDEHIKFADKIYEEIAYYAIKASMELAKEKGSYPAFKGSEWETGK 610 (764)
T ss_pred CchHHHHHHHHhcCccceeHHHHHHHHHHCCCCcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCCCCcChhhccc
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCccccccCCCCcccHHHHHHHHHhcCccccceeccCCCCccccccCCCccccccccceeEEEcccCceEEeChHHHHHH
Q 003561 585 LQPDMWNVIPSDRWDWGVLRDMISKNGVRNSLLVAPMPTASTSQILGNNECFEPYTSNIYSRRVLSGEFVVVNKHLLHDL 664 (811)
Q Consensus 585 l~~d~~~~~~~~~~dW~~Lr~~i~~~G~RNs~l~AiaPT~stS~i~g~s~gieP~~s~~y~r~~~~g~~~~vn~~l~~~l 664 (811)
+ |+.|+.. ..+|++||++|++||+|||+++|||||+|||+|+|+|+||||+|+++|.|+.
T Consensus 611 ~-~~~~~~~---~~~W~~L~~~i~~~GlRNs~l~AiAPT~StS~i~g~s~giEP~~~~~~~r~~---------------- 670 (764)
T PRK07088 611 Y-FERRGYN---SERWKKLKEEIKKYGMRNGYITAVAPTGSTSNIANTTAGIDPVFKRFFMEEK---------------- 670 (764)
T ss_pred h-hhccccc---cccHHHHHHHHHHhCccccccccCCCCcchhhhcCCCCcccchhhhHhhhhc----------------
Confidence 7 6766543 3489999999999999999999999999999999999999999999998742
Q ss_pred HHcCCCcHHHhhhhhccCCccc--ccCCCchHHHhhhhhhccCChHHHHHHHHHhccccccccceeEeeCC-CCHHHHHH
Q 003561 665 TEMGIWSPTIKNKIIYDDGSVQ--KIPEIPEELKMIYKTVWEIKQMTLVDMAVDRGCYIDQSQSLNIHMDQ-PNFKKVTS 741 (811)
Q Consensus 665 ~~~g~~~~~~~~~i~~~~Gsv~--~i~~~p~~~k~~f~ta~ei~~~~~i~~~a~~Q~~vDqs~S~~l~~~~-~~~~~l~~ 741 (811)
+|+++ .+|.+|++.+++|+|||||+|+++|+|+|+||||||||||+|||+++ ++.++|.+
T Consensus 671 -----------------~g~~~~~~~~~l~~~~~~~y~tA~ei~~~~~I~~~A~rQ~~IDqsiS~nl~~~~~~t~~~l~~ 733 (764)
T PRK07088 671 -----------------KGSFTPKTAPDLNEENFWYYKEAHTIDQQWSIKACGVRQRHIDQAQSFNLYITPEYKAKQILN 733 (764)
T ss_pred -----------------CCceeecCCcccCHHHHHHhchHHhCCHHHHHHHHHHHcccccccccCceecCCCCCHHHHHH
Confidence 23322 35678888889999999999999999999999999999999999995 69999999
Q ss_pred HHHHHHHcCCceEEEEecCccc
Q 003561 742 LHFRTWSRGLKTGMYYLRSRAA 763 (811)
Q Consensus 742 ~~~~Awk~GlKt~~YY~r~~~~ 763 (811)
+|++|||+|||| +||+|+++.
T Consensus 734 ~y~~Awk~GlKt-~yY~R~~s~ 754 (764)
T PRK07088 734 LYIEAWKQGVKT-IYYVRNKSL 754 (764)
T ss_pred HHHHHHHcCCCE-EEEEecCCc
Confidence 999999999999 899999654
No 9
>PRK09103 ribonucleotide-diphosphate reductase subunit alpha; Validated
Probab=100.00 E-value=8.4e-181 Score=1586.12 Aligned_cols=707 Identities=30% Similarity=0.491 Sum_probs=662.0
Q ss_pred CeEEecCCceeecChHHHHHHHHHHHccCCCCCCCHHHHHHHHHhhcCCCCCHHHHHHHHHHHHHhhcc-CCCChHHHHH
Q 003561 1 MYVVKRDGRQEAVHFDKITARLKKLSYGLSTEHCDPVLVSQKVCAGVYKGVTTSQLDELAAETAAAMTT-NHPDYASLAA 79 (811)
Q Consensus 1 ~~V~KrdG~~e~~~~~ki~~~i~~~~~~l~~~~v~~~~i~~~~~~~l~~gitt~ei~~~~~~~a~~~~~-~~p~y~~lA~ 79 (811)
|+|+||||+.|+|+.+||+++|+++|+||+ .+|+++|+.++..+++|||||+||++++|++|++|++ .||||++|||
T Consensus 2 ~~v~k~~g~~~~~~~~k~~~~~~~~~~~l~--~~~~~~l~~~~~~~~~~~~t~~e~~~~~~~~a~~~~~~~~pdy~~~Aa 79 (758)
T PRK09103 2 LLVTKRDGRTERINLDKIHRVITWAAEGLH--NVSVSQVELRSHIQFYDGIKTSDIHETIIKAAADLISRDAPDYQYLAA 79 (758)
T ss_pred eEEEEeCCccccCCHHHHHHHHHHHhccCc--cCCHHHHHHHHHhhccCCCCHHHHHHHHHHHHHHhCcccCCcHHHHHH
Confidence 689999999999999999999999999996 4999999999999999999999999999999999998 9999999999
Q ss_pred HHHHHHHHHHhhhhhhHHHHHHHHhhhhccCCcccCcChHHHH-HHHhcHHHHHHhhcccccCCCChhhHHHHHHhhccc
Q 003561 80 RIAVSNLHKNTKKSFSETIKDMYNHYNERSGLKAPLIADDIYE-IIMKNAACLDSEIIYDRDFDYDYFGFKTLERSYLLK 158 (811)
Q Consensus 80 rl~~~~l~k~~~~~~~~~~~~l~~~~~~~~~~~~~l~~~~~~~-~~~~~~~~l~~~i~~~rd~~~~y~g~~~l~~~Yl~k 158 (811)
||++++|||++.++|.. ..+++++. ..+..+++++++++ |+.+++++|+++|+++||+.|+|+|+++|+++||+|
T Consensus 80 rl~~~~l~k~~~~~~~~--~~~~~~~~--~l~~~~~~~~~~~~~~~~~~~~~l~~~i~~~rd~~f~y~~~~~l~~rYllk 155 (758)
T PRK09103 80 RLAIFHLRKKAYGQFEP--PALYDHVV--KMVEMGKYDKHLLEDYTEEEFDQMDTFIDHWRDMNFSYAAVKQLEGKYLVQ 155 (758)
T ss_pred HHHHHHHHHHHHccccc--hhHHHHHH--HHHHcCchhHHHHHHcCHHHHHHHHHHhchhhccCCCHHHHHHHhhceecc
Confidence 99999999999988755 13333332 22334789999998 899999999999999999999999999999999998
Q ss_pred --cCCcccCCHHHHHHHHHhHhccC-----CHHHHHHHHHHHhcCcEecccccccccCCCCCCCCccccccccCCCHHHH
Q 003561 159 --VQGKVVERPQHMLMRVSIGIHKD-----DIDSAIKTYHMMSQRWFTHASPTLFNAGTPRPQLSSCFLVCMKDDSIEGI 231 (811)
Q Consensus 159 --~~g~~~E~pq~~~~RvA~~l~~~-----~~~~~~~~y~~ls~~~~~~atP~l~naGt~~~~lsSCfl~~~~~Ds~~~I 231 (811)
.+|+++|+||+||||||++||.. +++++++||++||+++|+||||+|+|||++++|||||||+++ +||++||
T Consensus 156 ~~~~~~~~E~pq~~~~rVA~~la~~e~~~~~~~~~~~fy~~ls~~~~~~~Tp~l~naGt~~~qlsSCFl~~v-~Dsl~~I 234 (758)
T PRK09103 156 NRVTGEIYESAQFLYILVAACLFSNYPKETRLDYVKRFYDAVSTFKISLPTPIMSGVRTPTRQFSSCVLIEC-GDSLDSI 234 (758)
T ss_pred ccCCCCcccCHHHHHHHHHHHHhhccCccchHHHHHHHHHHHHhCCcCCCCchhcCCCCCCCCeeEEEecCC-CCCHHHH
Confidence 37888999999999999999963 468899999999999999999999999999999999999997 8999999
Q ss_pred HHHHHHHHHHHHhcCCcceeeceecCCCCcccCCCCccCCcccHHHHHHHHHHHHhhCCCccccceEeeccCCcccHHHH
Q 003561 232 YETLKECAVISKSAGGIGVSVHNIRATGSYIRGTNGTSNGIVPMLRVFNDTARYVDQGGGKRKGAFAVYLEPWHADIFEF 311 (811)
Q Consensus 232 ~~~~~~~a~isk~ggGvG~~~s~iR~~Gs~I~g~~g~ssG~vp~lk~~~~~~~~v~QgG~~R~ga~~vyl~~wH~DI~~F 311 (811)
++++++++++++.|||||+|+|+|||+|++|+|++|.|+|||||||+||+++.+|+||| +||||+|+||++|||||++|
T Consensus 235 ~~~~~~~a~~~s~gGGiG~~~s~lR~~Gs~I~g~~g~ssG~vp~mk~~d~~~~~v~QgG-~RrGA~~vyL~~wHpDI~~F 313 (758)
T PRK09103 235 NATSSAIVKYVSQRAGIGINAGRIRALGSPIRGGEAFHTGCIPFYKHFQTAVKSCSQGG-VRGGAATLFYPIWHLEVESL 313 (758)
T ss_pred HHHHHHHHHHHhcCCeEEeeccccCCCCCccCCCCCCCCChHHHHHHHHHHHHHHHcCC-CCCcceEEEecCCCccHHHH
Confidence 99999999988889999999999999999999999999999999999999999999999 89999999999999999999
Q ss_pred HHhhhcCCcccccccccceecccCHHHHHHHHcCCceEEecCCCCCcchhhh---hhHHHHHHHHHHhcC-ceeEEEeHH
Q 003561 312 LNLKKNHGKEEHRARDLFYALWVPDLFMERVQTNGQWSLFCPNEASGLADCW---GAEFEKLYTHYEREG-KAKKVVQAQ 387 (811)
Q Consensus 312 l~~K~~~g~e~~r~~~l~~sv~ipD~Fm~rv~~~~~W~Lf~P~~~~~L~~~y---g~eF~~~Y~~~e~~~-~~~~~v~Ar 387 (811)
|++|+++|+++.|++++|+||||||+||+||++|++|+||+|+++|+|.+.| |++|+++|.+||+++ ..+++|+||
T Consensus 314 L~~K~~~g~e~~r~~~l~~sv~ipD~FM~~v~~d~~w~Lf~P~~~~~l~~~~~~~~~ef~~~Y~~~e~~~~~~~~~v~Ar 393 (758)
T PRK09103 314 LVLKNNRGVEENRVRHMDYGVQINKLMYQRLIKGGDITLFSPSDVPGLYDAFFADQDEFERLYTKYEQDDSIRKKRVKAV 393 (758)
T ss_pred HHhcccCCchhhhHhhCchhhccCHHHHHHHHcCCCeEEeCccccccccccccchhHHHHHHHHHHHhcCCeeeEEEeHH
Confidence 9999999999999999999999999999999999999999999999999998 699999999999876 468999999
Q ss_pred HHHHHHHHHHHhhCCceeEehhhhhhhcCC-CCCCceeeecCCccccccCCC--------CcceeEEecccccchhcccC
Q 003561 388 NLWFEILTSQIETGTPYMLFKDTCNRKSNQ-QNLGTIKSSNLCTEIIEYTSP--------TETAVCNLASIALPRFVREK 458 (811)
Q Consensus 388 ~L~~~I~~~~~etG~P~i~f~D~~Nr~~~~-~~~g~I~~sNlC~EI~~~~~~--------~e~~~CNL~SInL~~~v~~~ 458 (811)
+||++|+++++|||.|||+|+|++|+++|+ +|.|+|++||||+||+|++.| +|+++|||+||||++|
T Consensus 394 eLw~~I~~~~~etG~pfi~fkD~~N~~~p~~~~~g~I~~SNlC~Ei~l~~~p~~~~~~~~~e~~vCNLgSINL~~~---- 469 (758)
T PRK09103 394 ELFSLMMQERASTGRIYIQNVDHCNTHSPFDPKVAPVRQSNLCLEIALPTKPLNDVNDENGEIALCTLSAFNLGAI---- 469 (758)
T ss_pred HHHHHHHHHhcCcCCceeeechhhhhcCCCCccCCeeeecCcccccccCCcccccccccCCCeeEEEhHHHHHHHh----
Confidence 999999999999999999999999999995 689999999999999999886 7889999999999987
Q ss_pred CCCCCCCCccccccCCCCCccCCHHHHHHHHHHHHHHHHHHHhcCCCcHHHHHHHhhccCCeeeecchHHHHHHHcCCCC
Q 003561 459 DVPVESHPSRIVGSRGSKNRFFDFEKLAEVTAIVTENLNKIIDVNYYPVETARRSNLRHRPIGIGVQGLADTFILLGMAF 538 (811)
Q Consensus 459 ~~~~~~~~~~~~g~~~~~~~~fD~~~L~~~v~~avr~LD~vId~~~~p~~~~~~~~~~~R~iGlGv~Glad~L~~~gi~y 538 (811)
|||+.|+++|+++||+||+|||+|.||+|+++++|+++|+||||+|||||+|+++|++|
T Consensus 470 ---------------------~d~~~l~~~v~~avr~LDnVID~~~yP~~~~~~~n~~~R~IGLGvmGlad~L~~lgi~Y 528 (758)
T PRK09103 470 ---------------------NSLDELEELADLAVRALDALLDYQDYPIPAAKRGAMGRRTLGIGVINFAYYLAKNGVRY 528 (758)
T ss_pred ---------------------cCHHHHHHHHHHHHHHHHHHHHhcCCChHHHHHHHhhcCccccchHHHHHHHHHcCCCC
Confidence 47899999999999999999999999999999999999999999999999999999999
Q ss_pred CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCCCCCCccccCCCCccccccCC------CCcccHHHHHHHHHhcCc
Q 003561 539 ESPEAQQLNKDIFETIYYHALKTSSEIAAKEGPYETYHNSPVSKGILQPDMWNVIP------SDRWDWGVLRDMISKNGV 612 (811)
Q Consensus 539 ~S~ea~~l~~~i~e~i~~~a~~aS~eLAke~G~~~~f~~S~~~~G~l~~d~~~~~~------~~~~dW~~Lr~~i~~~G~ 612 (811)
+|+||++|+++|||+|+|+|++||++||||+|+||.|++|+|++|+|++|.|...+ ...+||++||++|++||+
T Consensus 529 ~S~eA~~l~~~i~e~i~~~A~~aS~eLAkErG~fp~f~~S~~~~G~~~~~~~~~~~~~~~~~~~~~dW~~Lr~~i~~~Gl 608 (758)
T PRK09103 529 SDGSANNLTHKTFEAIQYYLLKASNELAKEQGACPWFNETTYAQGILPIDTYKKDLDAICNEPLHYDWETLREEIKTHGL 608 (758)
T ss_pred CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCCCCCChhhcCCchhhhhhhhccccccccchhhHHHHHHHHHHhCc
Confidence 99999999999999999999999999999999999999999999999999886542 124799999999999999
Q ss_pred cccceeccCCCCccccccCCCccccccccceeEEEcccCceEEeChHHHHHHHHcCCCcHHHhhhhhccCCcccccCCCc
Q 003561 613 RNSLLVAPMPTASTSQILGNNECFEPYTSNIYSRRVLSGEFVVVNKHLLHDLTEMGIWSPTIKNKIIYDDGSVQKIPEIP 692 (811)
Q Consensus 613 RNs~l~AiaPT~stS~i~g~s~gieP~~s~~y~r~~~~g~~~~vn~~l~~~l~~~g~~~~~~~~~i~~~~Gsv~~i~~~p 692 (811)
|||+++|||||||||+|+|+|+||||+|+++|.|++.+|.++.++|.+
T Consensus 609 RNs~l~AiaPTgS~S~i~g~s~giEP~~s~~~~k~~~~g~~~~~~p~~-------------------------------- 656 (758)
T PRK09103 609 RNSTLSALMPSETSSQISNATNGIEPPRGYVSIKASKDGILKQVVPDY-------------------------------- 656 (758)
T ss_pred cccceeecCCcHHHHHHhCcCCCcCccccceeeeeccCceeeecCCCH--------------------------------
Confidence 999999999999999999999999999999999998888776655544
Q ss_pred hHHHhhhhhhccC-ChHHHHHHHHHhccccccccceeEeeCC-------CCHHHHHHHHHHHHHcCCceEEEEecCcccc
Q 003561 693 EELKMIYKTVWEI-KQMTLVDMAVDRGCYIDQSQSLNIHMDQ-------PNFKKVTSLHFRTWSRGLKTGMYYLRSRAAA 764 (811)
Q Consensus 693 ~~~k~~f~ta~ei-~~~~~i~~~a~~Q~~vDqs~S~~l~~~~-------~~~~~l~~~~~~Awk~GlKt~~YY~r~~~~~ 764 (811)
++++..|+++|+| +|+++|+|+|+||||||||||+|||+++ ++.++|.++|++|||+|||| +||+|+++++
T Consensus 657 ~~~~~~y~~~~~i~~~~~~I~~~A~rQ~~VDQsqS~nl~~~~~~~~~~~~t~~~l~~~~~~Aw~~GlKT-~YY~rs~~~~ 735 (758)
T PRK09103 657 ERLKDAYELLWEMPNNDGYLQLVGIMQKFVDQSISANTNYDPSRFPSGKVPMKQLLKDLLTAYKFGVKT-LYYHNTRDGA 735 (758)
T ss_pred HHHHHHHHHHHhccChHHHHHHHHHHhhhcchhhcceeeecccccccCCCCHHHHHHHHHHHHHhCCce-EeecCchhhh
Confidence 3455678999999 5899999999999999999999999842 47899999999999999999 8999999999
Q ss_pred ccccccccc
Q 003561 765 DAIKFTVDT 773 (811)
Q Consensus 765 ~~~~~~~~~ 773 (811)
+++|||+..
T Consensus 736 ~~~~~~~~~ 744 (758)
T PRK09103 736 EDAQDDLQP 744 (758)
T ss_pred hhhhhhccc
Confidence 999999654
No 10
>PRK09209 ribonucleotide-diphosphate reductase subunit alpha; Validated
Probab=100.00 E-value=1.4e-180 Score=1587.26 Aligned_cols=695 Identities=32% Similarity=0.517 Sum_probs=645.8
Q ss_pred eEEecCCceeecChHHHHHHHHHHHccCCCCCCCHHHHHHHHHhhcCC--CCCHHHHHHHHHHHHHhhc-cCCCChHHHH
Q 003561 2 YVVKRDGRQEAVHFDKITARLKKLSYGLSTEHCDPVLVSQKVCAGVYK--GVTTSQLDELAAETAAAMT-TNHPDYASLA 78 (811)
Q Consensus 2 ~V~KrdG~~e~~~~~ki~~~i~~~~~~l~~~~v~~~~i~~~~~~~l~~--gitt~ei~~~~~~~a~~~~-~~~p~y~~lA 78 (811)
+|+||||+.|+|+++||+++|+++|+|++ .+|+..++.++..++++ ||||+||+++++++|++++ ..||||+.||
T Consensus 11 ~v~~~~g~~~~~~~~ki~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~t~~e~~~~~~~~a~~~~~~~~p~y~~~A 88 (761)
T PRK09209 11 IVKEAGNRKLPFDKERLDRYIDQIHAEFP--QLDVEDYKRRVFNFVERKESVTADDLVDYLIREAEARVDLEEPEWTFFA 88 (761)
T ss_pred EEEccCCccccCCHHHHHHHHHHHhCCCC--ccCHHHHHHHHHhccCCCCCCCHHHHHHHHHHHHHHhccccCccHHHHH
Confidence 58999999999999999999999999986 48999999999999975 9999999999999998776 4999999999
Q ss_pred HHHHHHHHHHHhhhhhh-H---HHHHHHHhhhhccCCcccCcChHHHH-HHHhcHHHHHHhhcccccCCCChhhHHHHHH
Q 003561 79 ARIAVSNLHKNTKKSFS-E---TIKDMYNHYNERSGLKAPLIADDIYE-IIMKNAACLDSEIIYDRDFDYDYFGFKTLER 153 (811)
Q Consensus 79 ~rl~~~~l~k~~~~~~~-~---~~~~l~~~~~~~~~~~~~l~~~~~~~-~~~~~~~~l~~~i~~~rd~~~~y~g~~~l~~ 153 (811)
|||++.+|||++.+.+. . ....+..++. .++..+++++++++ |+.+++++|+++|+++||+.|+|+|+++|++
T Consensus 89 arl~~~~l~k~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~y~~~~~~~l~~~i~~~rd~~~~y~g~~~l~~ 166 (761)
T PRK09209 89 ARLYLNRLYKRASRNRFYDASEKYGSFVGLQE--SLAERGIYSNDLLKRYSKEELIEAGKMIDPERDKLFTYIGLYLLAD 166 (761)
T ss_pred HHHHHHHHHHHHHhcccccchhhhhhHHHHHH--HHHhcCcccHHHHHhcCHHHHHHHHHHhhhhcccCCCHHHHHHHHH
Confidence 99999999999965320 0 0112222221 24456789999987 7799999999999999999999999999999
Q ss_pred hhcccc-CCcccCCHHHHHHHHHhHhccC-----CHHHHHHHHHHHhcCcEecccccccccCCCCCCCCccccccccCCC
Q 003561 154 SYLLKV-QGKVVERPQHMLMRVSIGIHKD-----DIDSAIKTYHMMSQRWFTHASPTLFNAGTPRPQLSSCFLVCMKDDS 227 (811)
Q Consensus 154 ~Yl~k~-~g~~~E~pq~~~~RvA~~l~~~-----~~~~~~~~y~~ls~~~~~~atP~l~naGt~~~~lsSCfl~~~~~Ds 227 (811)
+||+|. +|+++|+||++|||||++||.. +++++++||++||+++|+||||||+|||++++|||||||+++ +||
T Consensus 167 rYllk~~~~~~~E~pq~~~mrVA~~la~~e~~~~r~~~~~~fY~~Ls~~~~~~aTPtl~NaGt~~~qlsSCFl~~v-~Ds 245 (761)
T PRK09209 167 RYLATDSDRNVYELPQERWLTIALYLMQNEPRERRMQLVKEAYWALSNLYMTVATPTLANAGKVGGQLSSCFIDTV-DDS 245 (761)
T ss_pred hhCCcCCCCCEEECHHHHHHHHHHHHHhhcccccHHHHHHHHHHHHHcCcccCCCHHHhcCCCCCCCeeeeEeCCc-ccc
Confidence 999994 5889999999999999999964 367899999999999999999999999999999999999987 899
Q ss_pred HHHHHHHHHHHHHHHHhcCCcceeeceecCCCCcccCCCCccCCcccHHHHHHHHHHHHhhCCCccccceEeeccCCccc
Q 003561 228 IEGIYETLKECAVISKSAGGIGVSVHNIRATGSYIRGTNGTSNGIVPMLRVFNDTARYVDQGGGKRKGAFAVYLEPWHAD 307 (811)
Q Consensus 228 ~~~I~~~~~~~a~isk~ggGvG~~~s~iR~~Gs~I~g~~g~ssG~vp~lk~~~~~~~~v~QgG~~R~ga~~vyl~~wH~D 307 (811)
++||+++++++++++|.|||||+|+|+|||+|++|+|++|+|+|+|||||+||+++++|+||| +|+||+|+||++||||
T Consensus 246 l~~I~~~~~~~a~isk~gGGiG~~~s~iR~~Gs~I~g~~g~ssG~vp~lk~~n~~~~~v~QgG-~RrGA~avyL~~wHpD 324 (761)
T PRK09209 246 LQGIYDSNTDVARVSKHGGGVGAYLGKVRSRGSDIRGFKGVSSGVIPWIKQLNNTAVSVDQLG-QRKGAIAVYLDVWHKD 324 (761)
T ss_pred HHHHHHHHHHHHHHHHcCCeEEecccccCCCCCcccCCCCCCcCHHHHHHHHHHHHHHHHcCC-ccCCceeEEEeCCccc
Confidence 999999999999999999999999999999999999999999999999999999999999999 8999999999999999
Q ss_pred HHHHHHhhhcCCcccccccccceecccCHHHHHHHHcCCceEEecCCCCC-----cchhhhhh-----HHHHHHHHHHhc
Q 003561 308 IFEFLNLKKNHGKEEHRARDLFYALWVPDLFMERVQTNGQWSLFCPNEAS-----GLADCWGA-----EFEKLYTHYERE 377 (811)
Q Consensus 308 I~~Fl~~K~~~g~e~~r~~~l~~sv~ipD~Fm~rv~~~~~W~Lf~P~~~~-----~L~~~yg~-----eF~~~Y~~~e~~ 377 (811)
|++||++|+++|++++|++++|+||||||+||+||++|++|+||+|+++| +|.+.||+ +|+++|++|+++
T Consensus 325 I~~FL~~K~~~gde~~R~~~l~~~v~ipD~FM~~V~~d~~w~Lf~P~~~~~~~g~~L~d~yg~~~~~g~f~~~Y~~~~~~ 404 (761)
T PRK09209 325 IESFLDLRLNNGDERLRAHDVFTGVCIPDLFMEAVERRGDWYLFDPHEVKKVMGWYLEDFYDEKKGDGSFREKYEECVAD 404 (761)
T ss_pred HHHHHHhhcccccHHHhhhcchhhhccCHHHHHHHHCCCCEEEECccccccccCccHHHhhccccccchHHHHHHHHHhC
Confidence 99999999999999999999999999999999999999999999999998 69999997 899999999985
Q ss_pred -CceeEEEeHHHHHHHHHHHHHhhCCceeEehhhhhhhcCCCCCCceeeecCCccccccCCCC-----------------
Q 003561 378 -GKAKKVVQAQNLWFEILTSQIETGTPYMLFKDTCNRKSNQQNLGTIKSSNLCTEIIEYTSPT----------------- 439 (811)
Q Consensus 378 -~~~~~~v~Ar~L~~~I~~~~~etG~P~i~f~D~~Nr~~~~~~~g~I~~sNlC~EI~~~~~~~----------------- 439 (811)
+..+++|+||+||++|++++|+||+|||+|+|++||+||++|.|+|++||||+||+||++|+
T Consensus 405 ~~~~~~~v~Ar~Lw~~I~~s~~eTG~Pyi~f~D~~N~~np~~~~G~I~~SNlC~EI~q~~~p~~~~~~~~~~~~~~~~~~ 484 (761)
T PRK09209 405 ERLSRKTVKAIDIMKRIMVSQLETGNPFMFYRDEVNRMNPNKHEGMIYSSNLCTEIMQNMSPTVMIQEIISGGQIVITKQ 484 (761)
T ss_pred cCceeeeecHHHHHHHHHHHHHHhCCCeEEeHHHHhhcCCcccCCeeEeecCCcccccCCCccccccccccccccccccc
Confidence 66789999999999999999999999999999999999999999999999999999998774
Q ss_pred --cceeEEecccccchhcccCCCCCCCCCccccccCCCCCccCCHHHHHHHHHHHHHHHHHHHhcCCCcHHHHHHHhhcc
Q 003561 440 --ETAVCNLASIALPRFVREKDVPVESHPSRIVGSRGSKNRFFDFEKLAEVTAIVTENLNKIIDVNYYPVETARRSNLRH 517 (811)
Q Consensus 440 --e~~~CNL~SInL~~~v~~~~~~~~~~~~~~~g~~~~~~~~fD~~~L~~~v~~avr~LD~vId~~~~p~~~~~~~~~~~ 517 (811)
++++|||+||||++|+.+ +.|+++|+++||+||+|||+|.||+|+++++|+++
T Consensus 485 ~g~~~vCNL~SiNL~~~v~~-------------------------~~l~~~v~~avR~LDnVID~n~yP~~~~~~~n~~~ 539 (761)
T PRK09209 485 PGDFVVCNLSSINLGRAVTA-------------------------DVLERLIPIQVRMLDNVIDLNQLPVPQATITNQKY 539 (761)
T ss_pred cCCceEEEChHHHHHHHhch-------------------------HHHHHHHHHHHHHHHHHHhcccCchHHHHHHHHhc
Confidence 368999999999999853 68999999999999999999999999999999999
Q ss_pred CCeeeecchHHHHHHHcCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCCCCCCccccCCCCccccccCCCCc
Q 003561 518 RPIGIGVQGLADTFILLGMAFESPEAQQLNKDIFETIYYHALKTSSEIAAKEGPYETYHNSPVSKGILQPDMWNVIPSDR 597 (811)
Q Consensus 518 R~iGlGv~Glad~L~~~gi~y~S~ea~~l~~~i~e~i~~~a~~aS~eLAke~G~~~~f~~S~~~~G~l~~d~~~~~~~~~ 597 (811)
|+||||+|||||+|+++|++|+|+||++|+++|||+|+|+|++||++||+|+|+||.|++|+|++|++ |+.|+.. .
T Consensus 540 R~IGLGv~Glad~L~~lgi~Y~S~eA~~~~~~i~e~i~~~A~~aS~eLAkE~G~~~~f~~S~~~~g~~-~~~~~~~---~ 615 (761)
T PRK09209 540 RAIGLGTFGWHHLLALKGIAWESEEAVQYADELYERINYLTIQASMELAKEKGAYPVFKGSDWQTGEY-FERRGYN---S 615 (761)
T ss_pred cccccchhhHHHHHHHCCCCcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCCCCcChhhccch-hhhcCCc---h
Confidence 99999999999999999999999999999999999999999999999999999999999999999997 6766543 3
Q ss_pred ccHHHHHHHHHhcCccccceeccCCCCccccccCCCccccccccceeEEEcccCceEEeChHHHHHHHHcCCCcHHHhhh
Q 003561 598 WDWGVLRDMISKNGVRNSLLVAPMPTASTSQILGNNECFEPYTSNIYSRRVLSGEFVVVNKHLLHDLTEMGIWSPTIKNK 677 (811)
Q Consensus 598 ~dW~~Lr~~i~~~G~RNs~l~AiaPT~stS~i~g~s~gieP~~s~~y~r~~~~g~~~~vn~~l~~~l~~~g~~~~~~~~~ 677 (811)
.+|++||++|++||+|||+++|||||+|||+|+|+|+||||+|+++|.|+..+|++++
T Consensus 616 ~~W~~L~~~i~~~GlRNs~l~AiAPT~StS~i~g~t~giEP~~s~~y~r~~~~~~~~~---------------------- 673 (761)
T PRK09209 616 PQWDELAAQVAENGVRNAYLMAVAPNMSTAQIAGSTASIDPIYSAFYYEEKKDYRRPV---------------------- 673 (761)
T ss_pred hhHHHHHHHHHHhCcchhceeeeCCcHHHHHHcCCCCccCcchhhHhhhhhccceeec----------------------
Confidence 5899999999999999999999999999999999999999999999999876665543
Q ss_pred hhccCCcccccCCCchHHHhhh-hhhccCChHHHHHHHHHhccccccccceeEeeCCC-CHHHHHHHHHHHHHcCCceEE
Q 003561 678 IIYDDGSVQKIPEIPEELKMIY-KTVWEIKQMTLVDMAVDRGCYIDQSQSLNIHMDQP-NFKKVTSLHFRTWSRGLKTGM 755 (811)
Q Consensus 678 i~~~~Gsv~~i~~~p~~~k~~f-~ta~ei~~~~~i~~~a~~Q~~vDqs~S~~l~~~~~-~~~~l~~~~~~Awk~GlKt~~ 755 (811)
.+|.+|++++++| +|||||+|+++|+|+|+||||||||||+|||++++ +.++|.++|++|||+|||| +
T Consensus 674 ---------~~p~l~~~~~~~y~~tA~ei~~~~~I~~~A~rQ~~IDQsiS~nl~~~~~~~~~~l~~~y~~Awk~GlKt-~ 743 (761)
T PRK09209 674 ---------TAPDLSLDTWPYYEKGAYKVDQFWSIRQNAARQRHVDQSISFNFYVPSTIRASELLDLHMTAWKEGLKT-T 743 (761)
T ss_pred ---------cCCCCChhHHHHHhhhHhhCCHHHHHHHHHHHcccccccccCceeCCCCCCHHHHHHHHHHHHHhCCCe-E
Confidence 2466788899999 99999999999999999999999999999999964 6899999999999999999 8
Q ss_pred EEecCccc
Q 003561 756 YYLRSRAA 763 (811)
Q Consensus 756 YY~r~~~~ 763 (811)
||+||++.
T Consensus 744 YY~Rt~~~ 751 (761)
T PRK09209 744 YYVRSTDI 751 (761)
T ss_pred EEeeccCc
Confidence 99999654
No 11
>PRK12364 ribonucleotide-diphosphate reductase subunit alpha; Provisional
Probab=100.00 E-value=1e-175 Score=1566.74 Aligned_cols=665 Identities=34% Similarity=0.540 Sum_probs=614.1
Q ss_pred CCHHHHHHHHHhhcCCCCCHHHHHHHHHHHHHhhccC-CCChHHHHHHHHHHHHHHHhhhhhhHH-HHHHHHhhhhccCC
Q 003561 34 CDPVLVSQKVCAGVYKGVTTSQLDELAAETAAAMTTN-HPDYASLAARIAVSNLHKNTKKSFSET-IKDMYNHYNERSGL 111 (811)
Q Consensus 34 v~~~~i~~~~~~~l~~gitt~ei~~~~~~~a~~~~~~-~p~y~~lA~rl~~~~l~k~~~~~~~~~-~~~l~~~~~~~~~~ 111 (811)
+|+.+|..++..++++||||+||++++|++|++|++. ||||++|||||++.+|||++...+.+. +..++.++. .++
T Consensus 126 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~p~~~~~Aarl~~~~l~k~~~~~~~~~~~~~~~~~~~--~~~ 203 (842)
T PRK12364 126 YSLDLLAEKFLSFCKPNMSEGESLAALIKAAVELTTQEAPDWEFIAARLLMLQFSKKLGKSLEKLGIHSFYDKIK--YLT 203 (842)
T ss_pred CCHHHHHHHHHHhccCCCcHHHHHHHHHHHHHHhccccCCcHHHHHHHHHHHHHHHHHhhhccccchHHHHHHHH--HHH
Confidence 3566678888888899999999999999999999996 699999999999999999986432221 122222221 244
Q ss_pred cccCcChHHHH-HHHhcHHHHHHhhcccccCCCChhhHHHHHHhhcccc-CCcccCCHHHHHHHHHhHhcc----CCHHH
Q 003561 112 KAPLIADDIYE-IIMKNAACLDSEIIYDRDFDYDYFGFKTLERSYLLKV-QGKVVERPQHMLMRVSIGIHK----DDIDS 185 (811)
Q Consensus 112 ~~~l~~~~~~~-~~~~~~~~l~~~i~~~rd~~~~y~g~~~l~~~Yl~k~-~g~~~E~pq~~~~RvA~~l~~----~~~~~ 185 (811)
..+++++++++ ++.+++++|+++|+++||+.|+|+|+++|+++||+|. +|+++|+||++|||||+++|. +++++
T Consensus 204 ~~~~~~~~~~~~~~~~~~~~l~~~i~~~rd~~~~y~g~~~l~~rYllk~~~~~~~E~pq~~~~rvA~~la~~e~~~~~~~ 283 (842)
T PRK12364 204 EEGLYGSYILEHYSREEIEEAAGFIDPERDKLFTYSGLDLLLKRYVIRTHSHEPLESPQEMFLGIALHLAMPEKQDRMGW 283 (842)
T ss_pred hcCchhHHHHHHhcHHHHHHHHHHhccccccCCCHHHHHHHHHhhCCcCCCCCeeeCHHHHHHHHHHHHHhhcccccHHH
Confidence 55789999986 7789999999999999999999999999999999994 588899999999999999995 46789
Q ss_pred HHHHHHHHhcCcEecccccccccCCCCCCCCccccccccCCCHHHHHHHHHHHHHHHHhcCCcceeeceecCCCCcccCC
Q 003561 186 AIKTYHMMSQRWFTHASPTLFNAGTPRPQLSSCFLVCMKDDSIEGIYETLKECAVISKSAGGIGVSVHNIRATGSYIRGT 265 (811)
Q Consensus 186 ~~~~y~~ls~~~~~~atP~l~naGt~~~~lsSCfl~~~~~Ds~~~I~~~~~~~a~isk~ggGvG~~~s~iR~~Gs~I~g~ 265 (811)
+++||++||+++|+||||||+||||+++|||||||+++ +||++||+++++++++++|.|||||+|+|+|||+||+|+|+
T Consensus 284 ~~~fy~~ls~~~~~~aTPtl~Nagt~~~qlsSCFl~~v-~Dsl~~I~~~~~~~a~isk~gGGiG~~~s~iR~~Gs~I~g~ 362 (842)
T PRK12364 284 VKRFYDMLSKLKVTMATPTLSNARKPFHQLSSCFIDTV-PDSLDGIYRSIDNFAQVSKFGGGMGLYFGKVRAVGSNIRGF 362 (842)
T ss_pred HHHHHHHHHcCCcccCCHHHhcCCCCCCCeeeeEeCCC-CccHHHHHHHHHHHHHHHhcCCeeeeeccccCCCCCcccCc
Confidence 99999999999999999999999999999999999986 89999999999999999999999999999999999999999
Q ss_pred CCccCCcccHHHHHHHHHHHHhhCCCccccceEeeccCCcccHHHHHHhhhcCCcccccccccceecccCHHHHHHHHcC
Q 003561 266 NGTSNGIVPMLRVFNDTARYVDQGGGKRKGAFAVYLEPWHADIFEFLNLKKNHGKEEHRARDLFYALWVPDLFMERVQTN 345 (811)
Q Consensus 266 ~g~ssG~vp~lk~~~~~~~~v~QgG~~R~ga~~vyl~~wH~DI~~Fl~~K~~~g~e~~r~~~l~~sv~ipD~Fm~rv~~~ 345 (811)
+|+|+|+|||||+||+++.+|+||| +||||+|+||++|||||++||++|+++|+++.|++++|+||||||+||++|++|
T Consensus 363 ~g~ssG~vp~lk~~~~~~~~v~QgG-~RrGA~~vyL~~wH~DI~~FL~~K~~~g~e~~r~~~l~~~v~ipD~Fm~~v~~~ 441 (842)
T PRK12364 363 QGVAGGVIRWIKLANDTAVAVDQLG-MRQGAVAVYLDVWHKDIPEFLQLRTNNGDDRMKAHDVFPAVCYPDLFWKMVRDD 441 (842)
T ss_pred CCCCCChHHHHHHHHHHHHHHHhCC-cCCCceeEEEeCCCccHHHHHHHhccCCchhhhhhhcchhheeCHHHHHHHHhC
Confidence 9999999999999999999999999 899999999999999999999999999999999999999999999999999986
Q ss_pred --CceEEecCCCCC-----cchhhhhhHHHHHHHHHHhcC-ceeEEEeHHHHHHHHHHHHHhhCCceeEehhhhhhhcCC
Q 003561 346 --GQWSLFCPNEAS-----GLADCWGAEFEKLYTHYEREG-KAKKVVQAQNLWFEILTSQIETGTPYMLFKDTCNRKSNQ 417 (811)
Q Consensus 346 --~~W~Lf~P~~~~-----~L~~~yg~eF~~~Y~~~e~~~-~~~~~v~Ar~L~~~I~~~~~etG~P~i~f~D~~Nr~~~~ 417 (811)
++|+||+|+++| +|.+.||++|+++|++|++++ ..+++|+||+||++|++++|+||+|||+|+|++|++||+
T Consensus 442 ~~~~w~Lf~P~~~~~~~g~~l~~~yg~~f~~~Y~~~~~~~~~~~~~v~Ar~L~~~I~~~~~etG~P~i~f~D~~N~~~~~ 521 (842)
T PRK12364 442 INQSWYLFCPHEILTVKGYALEDYYGEEWEKRYLDCVNDARISKRSIPIKDLVRLILKSAVETGTPFTFNRDTVNRANPN 521 (842)
T ss_pred CCCceEeecccccccccccchhhhcccHHHHHHHHHHhcccceeEEEEHHHHHHHHHHHHHHhCCCeeEehHHHhhcCCC
Confidence 899999999999 899999999999999999864 578999999999999999999999999999999999999
Q ss_pred CCCCceeeecCCccccccCCC-----------------------CcceeEEecccccchhcccCCCCCCCCCccccccCC
Q 003561 418 QNLGTIKSSNLCTEIIEYTSP-----------------------TETAVCNLASIALPRFVREKDVPVESHPSRIVGSRG 474 (811)
Q Consensus 418 ~~~g~I~~sNlC~EI~~~~~~-----------------------~e~~~CNL~SInL~~~v~~~~~~~~~~~~~~~g~~~ 474 (811)
+|.|+|++||||+||+||++| +++++|||+||||++|+
T Consensus 522 ~~~g~I~~SNlC~EI~q~~~p~~~~~~~~~~~d~~~~~~~~~~~~~~~~CNL~SinL~~~~------------------- 582 (842)
T PRK12364 522 KHKGMIYCSNLCTEIAQNMSAIETVSTEIETEDGDTVVVTTTRPGDFVVCNLASLSLGNID------------------- 582 (842)
T ss_pred CcCCeeEEecCcccccccCCccccccccccccccccccccccCCCCeeEEEcHHHHhhccc-------------------
Confidence 999999999999999998754 47899999999999985
Q ss_pred CCCccCCHHHHHHHHHHHHHHHHHHHhcCCCcHHHHHHHhhccCCeeeecchHHHHHHHcCCCCCCHHHHHHHHHHHHHH
Q 003561 475 SKNRFFDFEKLAEVTAIVTENLNKIIDVNYYPVETARRSNLRHRPIGIGVQGLADTFILLGMAFESPEAQQLNKDIFETI 554 (811)
Q Consensus 475 ~~~~~fD~~~L~~~v~~avr~LD~vId~~~~p~~~~~~~~~~~R~iGlGv~Glad~L~~~gi~y~S~ea~~l~~~i~e~i 554 (811)
.|||+.|+++|+++||+||+|||.+.||+|+++++|+++|+||||+|||||+|+++|++|+|+||++|+++|||+|
T Consensus 583 ----~~d~~~l~~~v~~~vr~LDnVID~~~yp~~~~~~~n~~~R~IGLGvmGlad~L~~~gi~Y~S~ea~~l~~~i~e~i 658 (842)
T PRK12364 583 ----LEDEEELEEVVRTVVRALDNVIDLNFYPVPYAQITNKRYRSIGLGVSGYHHALAKNGIRWESEEHLEFADRVFERI 658 (842)
T ss_pred ----cccHHHHHHHHHHHHHHHHHHHhcCCCchHHHHHHHHhccccccchHHHHHHHHHCCCCcCCHHHHHHHHHHHHHH
Confidence 2899999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHhCCCCCCCCCccccCCCCccccccCCCCcccHHHHHHHHHhcCccccceeccCCCCccccccCCCc
Q 003561 555 YYHALKTSSEIAAKEGPYETYHNSPVSKGILQPDMWNVIPSDRWDWGVLRDMISKNGVRNSLLVAPMPTASTSQILGNNE 634 (811)
Q Consensus 555 ~~~a~~aS~eLAke~G~~~~f~~S~~~~G~l~~d~~~~~~~~~~dW~~Lr~~i~~~G~RNs~l~AiaPT~stS~i~g~s~ 634 (811)
+|+|++||++||+|+|+||.|++|+|++|.+ |+.|+.. ..+|++||++|++||+|||+++|||||+|||+|+|+|+
T Consensus 659 ~~~a~~aS~eLA~E~G~~~~f~~S~~~~g~~-~~~~~~~---~~~W~~L~~~i~~~GlRNs~l~AiaPT~S~S~i~g~s~ 734 (842)
T PRK12364 659 NYAAIKASMEIAKEKGAYGYFEGSDWQTGAY-FRKRGYT---SEEWQRLAREVAENGMRNAYLLAVAPTSSTSIIAGTTA 734 (842)
T ss_pred HHHHHHHHHHHHHHhCCCCCCCcChhhccch-hhccCcc---hhhHHHHHHHHHHhCcchhheeccCCcHHHHHHcCCCC
Confidence 9999999999999999999999999999997 6766543 35899999999999999999999999999999999999
Q ss_pred cccccccceeEEEcccCceEEeChHHHHHHHHcCCCcHHHhhhhhccCCcc--cccCCCchHHHhhhhhhccCChHHHHH
Q 003561 635 CFEPYTSNIYSRRVLSGEFVVVNKHLLHDLTEMGIWSPTIKNKIIYDDGSV--QKIPEIPEELKMIYKTVWEIKQMTLVD 712 (811)
Q Consensus 635 gieP~~s~~y~r~~~~g~~~~vn~~l~~~l~~~g~~~~~~~~~i~~~~Gsv--~~i~~~p~~~k~~f~ta~ei~~~~~i~ 712 (811)
||||+|+++|.+.. .|++ +.+|.+|++.+++|+|||||+|+++|+
T Consensus 735 gieP~~~~~~~~~~---------------------------------~~~~~~~~~~~l~~~~~~~y~tA~ei~~~~~I~ 781 (842)
T PRK12364 735 GVDPVMKRYFLEEK---------------------------------KGALMPRVAPELSDKTFWLYKNAHLIDQKWSIR 781 (842)
T ss_pred ccCcchHhHHHHhh---------------------------------cCCcccccCccCCHHHHHHhccHhcCCHHHHHH
Confidence 99999998776531 1221 336789999999999999999999999
Q ss_pred HHHHhccccccccceeEeeCC-CCHHHHHHHHHHHHHcCCceEEEEecCccc
Q 003561 713 MAVDRGCYIDQSQSLNIHMDQ-PNFKKVTSLHFRTWSRGLKTGMYYLRSRAA 763 (811)
Q Consensus 713 ~~a~~Q~~vDqs~S~~l~~~~-~~~~~l~~~~~~Awk~GlKt~~YY~r~~~~ 763 (811)
|+|++|||||||||+|||+++ ++.++|.++|++|||+|||| +||+|+++.
T Consensus 782 ~~A~~Q~~IDqsiS~nl~~~~~~t~~~l~~~y~~Awk~GlKt-~yy~R~~~~ 832 (842)
T PRK12364 782 AAGVRQRHIDQAQSVNLYITNEFTMRQVLDLYLLAWEEGVKT-IYYVRSKSL 832 (842)
T ss_pred HHHHHhccchhhccCceecCCCCCHHHHHHHHHHHHHcCCCE-EEEEccCCc
Confidence 999999999999999999997 69999999999999999999 899999654
No 12
>PRK07187 ribonucleotide-diphosphate reductase subunit alpha; Validated
Probab=100.00 E-value=6.4e-158 Score=1385.44 Aligned_cols=623 Identities=24% Similarity=0.405 Sum_probs=561.4
Q ss_pred CChHHHHHHHHHHHHHH-Hh--hhhhhHHHHHHHHhhhhccCCcccCcChHHHH-HHHhcHHHHHHhhcccccCCCChhh
Q 003561 72 PDYASLAARIAVSNLHK-NT--KKSFSETIKDMYNHYNERSGLKAPLIADDIYE-IIMKNAACLDSEIIYDRDFDYDYFG 147 (811)
Q Consensus 72 p~y~~lA~rl~~~~l~k-~~--~~~~~~~~~~l~~~~~~~~~~~~~l~~~~~~~-~~~~~~~~l~~~i~~~rd~~~~y~g 147 (811)
-+.+.+|+|+++..++| ++ +++|.+.+..|. ..+++++++++ |..++++++.+.++..+|..|+|+|
T Consensus 26 ~~~d~~A~~~~~~~~~~~~~~~~~~~~~~~~~lv---------~~~~y~~~~~~~y~~~~l~~~~~~~~~~~~~~~~y~g 96 (721)
T PRK07187 26 FDSDKEAVERYLEEHVEPNQKKFNSLEEKLAYLV---------NNGYYEQEILDAYSFDQIEELFHYAYQYNHRFLSFMG 96 (721)
T ss_pred ccchHHHHHHHHHHHhhhccccccCHHHHHHHHH---------HcChhhHHHHhhCCHHHHHHHHhHhhhccccccchHH
Confidence 37789999999999998 57 456544333332 23478888875 6667777777777777777788999
Q ss_pred HHHHHHhhcccc-CCc-ccCCHHHHHHHHHhHhccCCHHHHHHHHHHHhcCcEecccccccccCCC-CCCCCcccccccc
Q 003561 148 FKTLERSYLLKV-QGK-VVERPQHMLMRVSIGIHKDDIDSAIKTYHMMSQRWFTHASPTLFNAGTP-RPQLSSCFLVCMK 224 (811)
Q Consensus 148 ~~~l~~~Yl~k~-~g~-~~E~pq~~~~RvA~~l~~~~~~~~~~~y~~ls~~~~~~atP~l~naGt~-~~~lsSCfl~~~~ 224 (811)
+++|+++|++|. +|+ ++|+||+++||||++++.++.+.+++||+.|++++|+||||||+|||++ ++|||||||+++
T Consensus 97 ~~~l~~rYllk~~~~~~~~E~pq~~~~~~Al~l~~~~~~~~~~~y~~~~~~~f~paTPtl~NaG~~~~~qlsSCFl~~v- 175 (721)
T PRK07187 97 AMKFYNSYALKTFDGKQYLETFEDRAVMNALFLADGDFTKAFDLLDQILLGRFQPATPTFLNAGKKRRGEYISCYLLRV- 175 (721)
T ss_pred HHHHHHhhccccCCCCeeeeCHHHHHHHHHHHhcCCCHHHHHHHHHHHHhCCcccCCcccccCCCCCCCCcCceEeccC-
Confidence 999999999994 465 4899999999999999988888999999999999999999999999998 699999999997
Q ss_pred CCCHHHHHHHHHHHHHHHHhcCCcceeeceecCCCCcccCCCCccCCcccHHHHHHHHHHHHhhCCCccccceEeeccCC
Q 003561 225 DDSIEGIYETLKECAVISKSAGGIGVSVHNIRATGSYIRGTNGTSNGIVPMLRVFNDTARYVDQGGGKRKGAFAVYLEPW 304 (811)
Q Consensus 225 ~Ds~~~I~~~~~~~a~isk~ggGvG~~~s~iR~~Gs~I~g~~g~ssG~vp~lk~~~~~~~~v~QgG~~R~ga~~vyl~~w 304 (811)
+||++||++++++++++||.|||||+|+|+|||+|++|+|++|.|+|||||||+||+++.+|+||| +||||+|+||++|
T Consensus 176 ~Dsl~sI~~~~~~~a~isK~GGGiG~~~s~lR~~Gs~I~g~~g~ssGvvp~mk~~~~~~~~v~QgG-~RrGA~~vyL~~w 254 (721)
T PRK07187 176 EDNMESISRAISTSLQLSKRGGGVALCLTNLREIGAPIKGIENQATGIIPVMKLLEDSFSYANQLG-QRQGAGAVYLHAH 254 (721)
T ss_pred CCCHHHHHHHHHHHHHHHhhCCeeeeeccccCCCCCcccCCCCCCCChHhHHHHHHHHHHHHHcCC-cccCceEEEEeCC
Confidence 899999999999999999999999999999999999999999999999999999999999999999 8999999999999
Q ss_pred cccHHHHHHhhhcCCcccccccccceecccCHHHHHHHHcCCceEEecCCCCCcchhhhhhHHH-----HHHHHHHhcC-
Q 003561 305 HADIFEFLNLKKNHGKEEHRARDLFYALWVPDLFMERVQTNGQWSLFCPNEASGLADCWGAEFE-----KLYTHYEREG- 378 (811)
Q Consensus 305 H~DI~~Fl~~K~~~g~e~~r~~~l~~sv~ipD~Fm~rv~~~~~W~Lf~P~~~~~L~~~yg~eF~-----~~Y~~~e~~~- 378 (811)
||||++||++|+++|+++.|++++++||||||+||++|++|++|+||+|+++ .+.||++|+ +.|.++++++
T Consensus 255 HpDI~eFL~~K~~~gde~~r~~~l~~~v~ipD~Fm~~v~~d~~w~Lf~P~~~---~~~yg~~~~~~~~~~~Y~~~~~~~~ 331 (721)
T PRK07187 255 HPDVLTFLDTKRENADEKIRIKSLSLGLVIPDITFELAKENKDMALFSPYDI---KREYGKPMSDISITEEYYNLLANPA 331 (721)
T ss_pred CccHHHHHHHhccccchhhhhccchHHhcccHHHHHHHHcCCCeEeECcchh---hHhhCcchhhhhhHHHHHHHHhccc
Confidence 9999999999999999999999999999999999999999999999999984 688998665 4588887754
Q ss_pred ceeEEEeHHHHHHHHHHHHHhhCCceeEehhhhhhhcCCCCCCceeeecCCccccccCCCCc------------ceeEEe
Q 003561 379 KAKKVVQAQNLWFEILTSQIETGTPYMLFKDTCNRKSNQQNLGTIKSSNLCTEIIEYTSPTE------------TAVCNL 446 (811)
Q Consensus 379 ~~~~~v~Ar~L~~~I~~~~~etG~P~i~f~D~~Nr~~~~~~~g~I~~sNlC~EI~~~~~~~e------------~~~CNL 446 (811)
..+++|+||+||++|+++||+||+|||+|+|++||+||++|.|+|++||||+||+|+++|++ +++|||
T Consensus 332 i~k~~V~AreL~~~I~~~~~etG~Pyi~f~D~iNr~np~~~~G~I~~SNlC~EI~q~~~p~~~~~~~~~~~~g~~~~CNL 411 (721)
T PRK07187 332 IKKTYISARKLFQTIAELHFESGYPYLLFDDTVNKRNPHAKKGRIVMSNLCSEIAQVSTPSTFNEDLSFKKIGEDICCNL 411 (721)
T ss_pred cceeEecHHHHHHHHHHHHHHHCCCeEEEhHHHhhcCCcccCCceeeccccccccccCCchhcccccccccCCCcceeeC
Confidence 45678999999999999999999999999999999999999999999999999999998864 689999
Q ss_pred cccccchhcccCCCCCCCCCccccccCCCCCccCCHHHHHHHHHHHHHHHHHHHhcCCC-cHHHHHHHhhccCCeeeecc
Q 003561 447 ASIALPRFVREKDVPVESHPSRIVGSRGSKNRFFDFEKLAEVTAIVTENLNKIIDVNYY-PVETARRSNLRHRPIGIGVQ 525 (811)
Q Consensus 447 ~SInL~~~v~~~~~~~~~~~~~~~g~~~~~~~~fD~~~L~~~v~~avr~LD~vId~~~~-p~~~~~~~~~~~R~iGlGv~ 525 (811)
+||||++|+.+ .+.|+++|+++||+||+|||.+++ |+|+++++|+++|+||||+|
T Consensus 412 gSiNL~~~v~~------------------------~~~~~~~v~~avR~LDnVId~~d~~~~p~~~~~n~~~R~IGLGvm 467 (721)
T PRK07187 412 GSLNIAKAMES------------------------GPEFEQLIYTSIRALDRVSRVSDLSCAPSIEKGNAANHAVGLGAM 467 (721)
T ss_pred HHHHHHHHhcc------------------------hhhHHHHHHHHHHHHHHHhhhhccCccHHHHHHHHhcCcccchHH
Confidence 99999999853 156889999999999999999865 78999999999999999999
Q ss_pred hHHHHHHHcCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCCCCCCccccCCCCccc--------ccc-----
Q 003561 526 GLADTFILLGMAFESPEAQQLNKDIFETIYYHALKTSSEIAAKEGPYETYHNSPVSKGILQPDM--------WNV----- 592 (811)
Q Consensus 526 Glad~L~~~gi~y~S~ea~~l~~~i~e~i~~~a~~aS~eLAke~G~~~~f~~S~~~~G~l~~d~--------~~~----- 592 (811)
||||+|+++||+|+|+||++|+++|||.|+|+|++||++||+|+|+||.|++|+|++|.+ |+. |..
T Consensus 468 Glad~La~lgi~Y~S~eA~~~~~~i~e~i~~~A~~aS~eLAkErG~fp~f~~S~~~~G~~-~~~~~~~~~~~~~~~~~~~ 546 (721)
T PRK07187 468 NLHGFLATNHIYYDSKEAVDFTDLFFYTMAYYAFKASNQLAKEKGAFAGFELSKYADGSY-FDKYTKEDAKKWTPKTAKV 546 (721)
T ss_pred HHHHHHHHCCCCcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCCcccChhhccch-hhhhhhccccccCcchhhh
Confidence 999999999999999999999999999999999999999999999999999999999987 343 321
Q ss_pred ---------CCCCcccHHHHHHHHHhcCccccceeccCCCCccccccCCCccccccccceeEEEcccCceEEeChHHHHH
Q 003561 593 ---------IPSDRWDWGVLRDMISKNGVRNSLLVAPMPTASTSQILGNNECFEPYTSNIYSRRVLSGEFVVVNKHLLHD 663 (811)
Q Consensus 593 ---------~~~~~~dW~~Lr~~i~~~G~RNs~l~AiaPT~stS~i~g~s~gieP~~s~~y~r~~~~g~~~~vn~~l~~~ 663 (811)
..+..++|++||++|++||+|||+++|||||||||+|+|+|+||||+|+++|.|+..++....+
T Consensus 547 ~~~~~~~~~~~~~~~~W~~L~~~i~k~GlRNs~l~AiAPTgSiS~i~g~s~gIEP~~s~~~~R~~~~~~~~~~------- 619 (721)
T PRK07187 547 KELLQKYGVTIPTQADWQELVEDIKKTGLANSHLLAVAPTGSISYLSSCTPSLQPVVAPVEVRKEGKLGRIYV------- 619 (721)
T ss_pred hhhhhhccccccchhhHHHHHHHHHHhCcccceeeeeCCcchHHHHhCCCcchhHhhhhhheeeccCCceEEc-------
Confidence 1123678999999999999999999999999999999999999999999999998644322111
Q ss_pred HHHcCCCcHHHhhhhhccCCcccccCCCchHHHhhh-hhhccCChHHHHHHHHHhccccccccceeEeeCC-CCHHHHHH
Q 003561 664 LTEMGIWSPTIKNKIIYDDGSVQKIPEIPEELKMIY-KTVWEIKQMTLVDMAVDRGCYIDQSQSLNIHMDQ-PNFKKVTS 741 (811)
Q Consensus 664 l~~~g~~~~~~~~~i~~~~Gsv~~i~~~p~~~k~~f-~ta~ei~~~~~i~~~a~~Q~~vDqs~S~~l~~~~-~~~~~l~~ 741 (811)
..|.+|++.+++| +|||||+|+++|+|+|++|||||||||+|||+++ ++.++|.+
T Consensus 620 -----------------------~~~~l~~~~~~~y~~tA~eI~~~~~I~~~A~~Qk~IDqsiS~tl~~~~~~t~~dl~~ 676 (721)
T PRK07187 620 -----------------------PAYKIDQDNYAYYERGAYEVGPKPIIDIVAAAQKHVDQAISLTLFMTDQATTRDLNK 676 (721)
T ss_pred -----------------------ccccCCHHHHHHHhhhHHhcCHHHHHHHHHHHhhhccccccceeeCCCCCCHHHHHH
Confidence 2244677888899 9999999999999999999999999999999996 68999999
Q ss_pred HHHHHHHcCCceEEEEecCcccc
Q 003561 742 LHFRTWSRGLKTGMYYLRSRAAA 764 (811)
Q Consensus 742 ~~~~Awk~GlKt~~YY~r~~~~~ 764 (811)
+|++|||+|||| +||+|+++..
T Consensus 677 ~y~~Awk~GlKt-~YY~Rt~~~~ 698 (721)
T PRK07187 677 AYIQAFKQKCAS-IYYVRVRQDV 698 (721)
T ss_pred HHHHHHHcCCCE-EEEEeehhhh
Confidence 999999999999 9999996555
No 13
>PRK07632 ribonucleotide-diphosphate reductase subunit alpha; Validated
Probab=100.00 E-value=7.5e-157 Score=1372.54 Aligned_cols=575 Identities=26% Similarity=0.447 Sum_probs=533.1
Q ss_pred cHHHHHHhhcccccCCC---ChhhHHHHHHhhccccCC--cccCCHHHHHHHHHhHhccCCHHHHHHHHHHHhcCcEecc
Q 003561 127 NAACLDSEIIYDRDFDY---DYFGFKTLERSYLLKVQG--KVVERPQHMLMRVSIGIHKDDIDSAIKTYHMMSQRWFTHA 201 (811)
Q Consensus 127 ~~~~l~~~i~~~rd~~~---~y~g~~~l~~~Yl~k~~g--~~~E~pq~~~~RvA~~l~~~~~~~~~~~y~~ls~~~~~~a 201 (811)
+.++|++++++.+|+.| +|+|+++|+++|++|.++ .++|+||++|||||++|+.++.++|++||++|++++|+||
T Consensus 72 ~~~~l~~~~~~~~~~~~~~~~~~g~~~~~~~Y~lk~~~~~~~~E~~q~~~~~vAl~l~~~~~~~a~~~y~~ls~~~f~pa 151 (699)
T PRK07632 72 SEEDLIEVTDYAYSIKFNFASYMSASKFYKDYALKTNDKKQYLEDYEDHVAIVALYLANGDKAKAKQFISAMVEQRYQPA 151 (699)
T ss_pred CHHHHHHHHhHHhhccccccchhHHHHHHhhhccccCCCCeEEeCHHHHHHHHHHHHcCCCHHHHHHHHHHHHcCCeecC
Confidence 56667777666666655 688999999999999543 3789999999999999999999999999999999999999
Q ss_pred cccccccCCC-CCCCCccccccccCCCHHHHHHHHHHHHHHHHhcCCcceeeceecCCCCcccCCCCccCCcccHHHHHH
Q 003561 202 SPTLFNAGTP-RPQLSSCFLVCMKDDSIEGIYETLKECAVISKSAGGIGVSVHNIRATGSYIRGTNGTSNGIVPMLRVFN 280 (811)
Q Consensus 202 tP~l~naGt~-~~~lsSCfl~~~~~Ds~~~I~~~~~~~a~isk~ggGvG~~~s~iR~~Gs~I~g~~g~ssG~vp~lk~~~ 280 (811)
||||+|||++ ++||+||||+.+ +||++||++++++++++||.|||||+++|+|||+|++|+|++|.|+|||||||+||
T Consensus 152 TPtl~NaG~~~~~qlsSCFl~~v-~Dsl~sI~~~~~~~a~lsK~GGGvG~~~s~lR~~Gs~I~g~~g~ssGvvp~mk~~d 230 (699)
T PRK07632 152 TPTFLNAGRARRGELVSCFLLEV-DDSLNSINFIDSTAKQLSKIGGGVAINLSKLRARGEAIKGIKGAAKGVLPVAKLLE 230 (699)
T ss_pred CCcccCCCCCCCCCeeeEEeCCC-CCCHHHHHHHHHHHHHHHhcCCeEEecccccCCCCCcccCCCCCCCCHHHHHHHHH
Confidence 9999999997 699999999987 89999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHhhCCCccccceEeeccCCcccHHHHHHhhhcCCcccccccccceecccCHHHHHHHHcCCceEEecCCCCCcch
Q 003561 281 DTARYVDQGGGKRKGAFAVYLEPWHADIFEFLNLKKNHGKEEHRARDLFYALWVPDLFMERVQTNGQWSLFCPNEASGLA 360 (811)
Q Consensus 281 ~~~~~v~QgG~~R~ga~~vyl~~wH~DI~~Fl~~K~~~g~e~~r~~~l~~sv~ipD~Fm~rv~~~~~W~Lf~P~~~~~L~ 360 (811)
+++.+++||| +||||+|+||++|||||++||++|+++|+++.|++++|+||||||+||++|++|++|+||+|+++ .
T Consensus 231 ~~~~~v~QgG-~RrGA~avyL~~wHpDI~~FL~~K~~~gde~~r~~~l~~~v~ipD~Fme~v~~d~~w~Lf~P~~~---~ 306 (699)
T PRK07632 231 GGFSYADQLG-QRPGAGAVYLNIFHYDVEEFLDTKKVNADEDLRLSTISTGLIVPSKFFELAKEGKDFYMFAPHTV---Y 306 (699)
T ss_pred HHHHHHHhcC-ccccceeEEEeCCCccHHHHHHHhccccchhhHHHhcchhheecHHHHHHHHcCCCeEEECCccc---h
Confidence 9999999999 89999999999999999999999999999999999999999999999999999999999999986 5
Q ss_pred hhhhh-----HHHHHHHHHHhcC-ceeEEEeHHHHHHHHHHHHHhhCCceeEehhhhhhhcCCCCCCceeeecCCccccc
Q 003561 361 DCWGA-----EFEKLYTHYEREG-KAKKVVQAQNLWFEILTSQIETGTPYMLFKDTCNRKSNQQNLGTIKSSNLCTEIIE 434 (811)
Q Consensus 361 ~~yg~-----eF~~~Y~~~e~~~-~~~~~v~Ar~L~~~I~~~~~etG~P~i~f~D~~Nr~~~~~~~g~I~~sNlC~EI~~ 434 (811)
+.||+ +|++.|+++++++ ..+++|+||+||++|+++||+||+|||+|+|++|++||+++.|+|++||||+||+|
T Consensus 307 ~~yG~~~~~~~~~~~Y~~~~~~~~i~~~~I~AreL~~~I~~~~~etG~Pyi~f~D~~N~~np~~~~G~I~~SNlC~EI~~ 386 (699)
T PRK07632 307 KEYGVTLDDIDLEEMYDDLVANPNVKKKKKNAREMLNKIAQTQLQSGYPYLMFKDNANKVHPNSNIGQIKMSNLCTEIFQ 386 (699)
T ss_pred hhcCcccccchHHHHHHHHHhcCCeeecccCHHHHHHHHHHHHHHhCCCeEEeHHHHhhcCCCCCCCcEEecCCcccccc
Confidence 67776 7999999999875 45789999999999999999999999999999999999999999999999999998
Q ss_pred cCC---------CCcc---eeEEecccccchhcccCCCCCCCCCccccccCCCCCccCCHHHHHHHHHHHHHHHHHHHhc
Q 003561 435 YTS---------PTET---AVCNLASIALPRFVREKDVPVESHPSRIVGSRGSKNRFFDFEKLAEVTAIVTENLNKIIDV 502 (811)
Q Consensus 435 ~~~---------~~e~---~~CNL~SInL~~~v~~~~~~~~~~~~~~~g~~~~~~~~fD~~~L~~~v~~avr~LD~vId~ 502 (811)
++. ++++ ++|||+||||++|+++ +.|+++|+++||+||+|||.
T Consensus 387 ~~~~s~~~~~~~~~~~g~~~~CNLgSiNL~~~v~~-------------------------~~l~~~v~~avr~LdnViD~ 441 (699)
T PRK07632 387 LQETSIINDYGIEDEIKRDISCNLGSLNIVNVMES-------------------------KKFRDSVHSGMDALTVVSDV 441 (699)
T ss_pred cCCccccccccccccccccceeecchhhHHHhccc-------------------------chHHHHHHHHHHHHHHHHHh
Confidence 752 2333 4999999999999853 47999999999999999999
Q ss_pred CCCc-HHHHHHHhhccCCeeeecchHHHHHHHcCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhC-CCCCCCCCcc
Q 003561 503 NYYP-VETARRSNLRHRPIGIGVQGLADTFILLGMAFESPEAQQLNKDIFETIYYHALKTSSEIAAKEG-PYETYHNSPV 580 (811)
Q Consensus 503 ~~~p-~~~~~~~~~~~R~iGlGv~Glad~L~~~gi~y~S~ea~~l~~~i~e~i~~~a~~aS~eLAke~G-~~~~f~~S~~ 580 (811)
+.|| +|+++++|+++|+||||+|||||+|+++||+|+|+||++|+++|||+|+|+|++||++||+|+| +||.|++|+|
T Consensus 442 ~~~p~~p~~~~~n~~~R~IGLGvmGLad~La~~gi~Y~S~eA~~~~~~ife~i~~~A~~aS~eLAkE~G~~f~~f~~S~~ 521 (699)
T PRK07632 442 ANIQNAPGVRKANSELHSVGLGVMNLHGYLAKNKIGYESEEAKDFANTFFMMMNFYSIERSMEIAKERGETYQDFEKSDY 521 (699)
T ss_pred hcCCCCHHHHHHhhccCcccchHHHHHHHHHHcCCCcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCCccCcChh
Confidence 9998 9999999999999999999999999999999999999999999999999999999999999999 9999999999
Q ss_pred ccCCCCccccccC-----------------CCCcccHHHHHHHHHhcCccccceeccCCCCccccccCCCccccccccce
Q 003561 581 SKGILQPDMWNVI-----------------PSDRWDWGVLRDMISKNGVRNSLLVAPMPTASTSQILGNNECFEPYTSNI 643 (811)
Q Consensus 581 ~~G~l~~d~~~~~-----------------~~~~~dW~~Lr~~i~~~G~RNs~l~AiaPT~stS~i~g~s~gieP~~s~~ 643 (811)
++|++ |+.|... .+..+||++|+++|++||+|||+++|||||||||+|+|+|+||||+++++
T Consensus 522 ~~G~~-f~~~~~~~~~~~~~~v~~~~~~~~~~~~~dW~~L~~~i~k~GlRNs~l~AiAPTgSiS~i~g~s~siePi~s~i 600 (699)
T PRK07632 522 ANGKY-FEKYTTQDFEPKFEKVRELFEGMHIPTKEDWKKLQQDVEQYGLYHAYRLAIAPTQSISYVQNATSSVMPIVDQI 600 (699)
T ss_pred hccch-HhhhhhcccchhhhhhhhhhcccCCCchhhHHHHHHHHHHhCcccccccccCCchHHHHHhCCCccHHHHHHHH
Confidence 99997 7776321 12467999999999999999999999999999999999999999999998
Q ss_pred eEEEcccCceEEeChHHHHHHHHcCCCcHHHhhhhhccCCcccccCCCchHHHhhhhhhccCChHHHHHHHHHhcccccc
Q 003561 644 YSRRVLSGEFVVVNKHLLHDLTEMGIWSPTIKNKIIYDDGSVQKIPEIPEELKMIYKTVWEIKQMTLVDMAVDRGCYIDQ 723 (811)
Q Consensus 644 y~r~~~~g~~~~vn~~l~~~l~~~g~~~~~~~~~i~~~~Gsv~~i~~~p~~~k~~f~ta~ei~~~~~i~~~a~~Q~~vDq 723 (811)
|.|... .+++++.+|.+|++.+++|+|||||+|+++|+|+|++||||||
T Consensus 601 ~~r~~~-------------------------------~~~~~~~~p~l~~~~~~~y~tA~ei~~~~~I~~~A~~Q~~IDQ 649 (699)
T PRK07632 601 ERRTYG-------------------------------NAETFYPMPFLSPQTMWYYKSAFNTDQMKLIDLIATIQTHIDQ 649 (699)
T ss_pred HhhhcC-------------------------------CCCceeeCccCCHHHHHHhccHhhCCHHHHHHHHHHHcccchh
Confidence 766421 2456678899999999999999999999999999999999999
Q ss_pred ccceeEeeCC-CCHHHHHHHHHHHHHcCCceEEEEecCcccc
Q 003561 724 SQSLNIHMDQ-PNFKKVTSLHFRTWSRGLKTGMYYLRSRAAA 764 (811)
Q Consensus 724 s~S~~l~~~~-~~~~~l~~~~~~Awk~GlKt~~YY~r~~~~~ 764 (811)
|||+|||+++ .+.++|.++|++|||+|||| +||+|+++.+
T Consensus 650 siS~tl~~~~~~t~~dl~~~y~~Awk~GlKt-iYY~Rt~~~~ 690 (699)
T PRK07632 650 GISTILYVNSEISTRELARLYVYAHHKGLKS-LYYTRNKLLS 690 (699)
T ss_pred hhcCceecCCCCCHHHHHHHHHHHHHcCCCe-EEEeeccccc
Confidence 9999999996 59999999999999999999 9999996554
No 14
>TIGR02506 NrdE_NrdA ribonucleoside-diphosphate reductase, alpha subunit. This model identifies RNR's in diverse clades of bacteria, eukaryotes as well as numerous DNA viruses and phage.
Probab=100.00 E-value=2.2e-153 Score=1346.16 Aligned_cols=595 Identities=47% Similarity=0.826 Sum_probs=570.1
Q ss_pred hhhHHHHHHhhcccc--CCcccCCHHHHHHHHHhHhcc-----CCHHHHHHHHHHHhcCcEecccccccccCCCCCCCCc
Q 003561 145 YFGFKTLERSYLLKV--QGKVVERPQHMLMRVSIGIHK-----DDIDSAIKTYHMMSQRWFTHASPTLFNAGTPRPQLSS 217 (811)
Q Consensus 145 y~g~~~l~~~Yl~k~--~g~~~E~pq~~~~RvA~~l~~-----~~~~~~~~~y~~ls~~~~~~atP~l~naGt~~~~lsS 217 (811)
|+|+++|+++|++|. +|+++|+||++|||||++++. .+.+++++||++|++++|+||||||+|+||+++||+|
T Consensus 1 ~~g~~~l~~~Y~lk~~~~~~~~E~p~~~~~rvA~~~a~~e~~~~~~~~~~~fy~~l~~~~~~patp~l~naGt~~~~lss 80 (617)
T TIGR02506 1 YMGLKELYNRYLLRNAATGAIYESPQEAYMRVAMGLASLEPKDTRLADAIRFYDLLSRLKISPATPTLFNAGTPRGQLSS 80 (617)
T ss_pred CchHHHHHHhhceecCCCCCcccCHHHHHHHHHHHHHhhccccchHHHHHHHHHHHHcCCeecCChhhhcCCCCCCCCcc
Confidence 789999999999983 356899999999999999985 2467899999999999999999999999999999999
Q ss_pred cccccccCCCHHHHHHHHHHHHHHHHhcCCcceeeceecCCCCcccCCCCccCCcccHHHHHHHHHHHHhhCCCccccce
Q 003561 218 CFLVCMKDDSIEGIYETLKECAVISKSAGGIGVSVHNIRATGSYIRGTNGTSNGIVPMLRVFNDTARYVDQGGGKRKGAF 297 (811)
Q Consensus 218 Cfl~~~~~Ds~~~I~~~~~~~a~isk~ggGvG~~~s~iR~~Gs~I~g~~g~ssG~vp~lk~~~~~~~~v~QgG~~R~ga~ 297 (811)
|||+.+.+||+++|+++++++++++|.|||||+|+|+|||+|++|+|++|.|+|+||||++||+++.+|+||| +||||.
T Consensus 81 Cfv~~~~dds~~~I~~~~~~~a~l~k~ggGvG~~~s~lR~~G~~i~~~~~~ssG~v~f~~~~d~~~~~v~qgg-~Rrga~ 159 (617)
T TIGR02506 81 CFLLDVTDDTLESIYKAIDDVAQLSKHGGGIGLNLTKLRAIGSPIRGTNNASKGIIPFLKLLDSSVEAVNQGG-KRPGAA 159 (617)
T ss_pred eEecCCCCCCHHHHHHHHHHHHHHHhcCCeEEecccccCCCCCccCCCCCCCCCceeHHHHHHHHHHHHhcCC-ccccce
Confidence 9999986899999999999999999999999999999999999999999999999999999999999999998 899999
Q ss_pred EeeccCCcccHHHHHHhhhcCCcccccccccceecccCHHHHHHHHcCCceEEecCCCCCcchhhhhhHHHHHHHHHHhc
Q 003561 298 AVYLEPWHADIFEFLNLKKNHGKEEHRARDLFYALWVPDLFMERVQTNGQWSLFCPNEASGLADCWGAEFEKLYTHYERE 377 (811)
Q Consensus 298 ~vyl~~wH~DI~~Fl~~K~~~g~e~~r~~~l~~sv~ipD~Fm~rv~~~~~W~Lf~P~~~~~L~~~yg~eF~~~Y~~~e~~ 377 (811)
|+||++|||||++||++|+++|+++.|++++|+||+|||+||+||++|++|+||+|++++.|.+.||++|++.|.+++++
T Consensus 160 ~~~l~~~HpDi~~Fi~~k~~~~~~~~r~~~~n~sv~i~D~Fm~~v~~d~~w~Lf~p~~~~~l~~~~~~~f~~~Y~~~~~~ 239 (617)
T TIGR02506 160 AVYLEVWHPDIEEFLDLKKNNGDERRRCDNLFYGLWIPDLFMKRVEEDKDWYLFSPYDVPGLYGLYGEEFEEEYERLEKD 239 (617)
T ss_pred EEEEeCCCccHHHHHHhccccCchhhHHHhcchhhccCHHHHHHHHcCCCeEEECccccchhhhcccHHHHHHHHHHHhc
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999987
Q ss_pred CceeE---EEeHHHHHHHHHHHHHhhCCceeEehhhhhhhcCCC-CCCceeeecCCccccccCCCC---cceeEEecccc
Q 003561 378 GKAKK---VVQAQNLWFEILTSQIETGTPYMLFKDTCNRKSNQQ-NLGTIKSSNLCTEIIEYTSPT---ETAVCNLASIA 450 (811)
Q Consensus 378 ~~~~~---~v~Ar~L~~~I~~~~~etG~P~i~f~D~~Nr~~~~~-~~g~I~~sNlC~EI~~~~~~~---e~~~CNL~SIn 450 (811)
+...+ +|+||+||++|++++|+||+|||+|+|++|+++|.+ +.|+|++||||+||+|++.++ ++++|||+|||
T Consensus 240 ~~~~~~~~~v~Arel~~~I~~~~~~tG~Pgi~f~D~~N~~~~~~~~~~~I~~sNpC~Ei~l~~~~~~~g~~~~CnL~SiN 319 (617)
T TIGR02506 240 VEARKKIRKVSARDLMKDILRTRVETGRPYILFKDAVNKHNPFKTGGGAIKMSNLCTEITQPTDDSHKGETAVCNLASVN 319 (617)
T ss_pred cccceeeeEeeHHHHHHHHHHHHHHHcCCceEecchhhhcCCcccCCceEEecCcCccccccCCcccCCceeEEEcHHHH
Confidence 55433 699999999999999999999999999999999987 778999999999999998776 88999999999
Q ss_pred cchhcccCCCCCCCCCccccccCCCCCccCCHHHHHHHHHHHHHHHHHHHhcCCCcHHHHHHHhhccCCeeeecchHHHH
Q 003561 451 LPRFVREKDVPVESHPSRIVGSRGSKNRFFDFEKLAEVTAIVTENLNKIIDVNYYPVETARRSNLRHRPIGIGVQGLADT 530 (811)
Q Consensus 451 L~~~v~~~~~~~~~~~~~~~g~~~~~~~~fD~~~L~~~v~~avr~LD~vId~~~~p~~~~~~~~~~~R~iGlGv~Glad~ 530 (811)
|++|+.++ .|||+.|+++|+++||+||+|||.+.||++++++.++++|+||||+|||||+
T Consensus 320 L~~fv~~~--------------------~fD~~~l~~~v~~avr~LD~vid~~~~p~~~~~~~~~~~R~iGlG~~Glad~ 379 (617)
T TIGR02506 320 LANFVMED--------------------KFDFSELEDAVRIAVRFLDNVIDLQNYPTAPAAKSNQRRRSIGIGVMGLHDV 379 (617)
T ss_pred HHHHhccC--------------------CCCHHHHHHHHHHHHHHHHHHHhCCCCCcHHHHHHHHhcCccccchhHHHHH
Confidence 99999752 4999999999999999999999999999999999999999999999999999
Q ss_pred HHHcCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCCCCCCccccCCCCccccccCCC-------CcccHHHH
Q 003561 531 FILLGMAFESPEAQQLNKDIFETIYYHALKTSSEIAAKEGPYETYHNSPVSKGILQPDMWNVIPS-------DRWDWGVL 603 (811)
Q Consensus 531 L~~~gi~y~S~ea~~l~~~i~e~i~~~a~~aS~eLAke~G~~~~f~~S~~~~G~l~~d~~~~~~~-------~~~dW~~L 603 (811)
|+++|++|+|+||++|+++|||.|+++|+++|++||+|+|+||.|++|+|++|+++++.|...+. ...+|++|
T Consensus 380 L~~~gi~Y~S~ea~~l~~~i~e~i~~~a~~aS~eLA~e~G~f~~f~~s~~~~g~~~~~~~~~~~~~~~~~~~~~~~W~~L 459 (617)
T TIGR02506 380 LAKLGLPYDSEEARDLNDRIFEAIYYYAIKASAELAKEKGPFPGFSGSKYAKGWLHPDTWEKTIDPKTSMAPTEEDWEAL 459 (617)
T ss_pred HHHCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCccccCcchhhhhhcccchhcccccchhhHHHH
Confidence 99999999999999999999999999999999999999999999999999999999998876542 45799999
Q ss_pred HHHHHhcCccccceeccCCCCccccccCCCccccccccceeEEEcccCceEEeChHHHHHHHHcCCCcHHHhhhhhccCC
Q 003561 604 RDMISKNGVRNSLLVAPMPTASTSQILGNNECFEPYTSNIYSRRVLSGEFVVVNKHLLHDLTEMGIWSPTIKNKIIYDDG 683 (811)
Q Consensus 604 r~~i~~~G~RNs~l~AiaPT~stS~i~g~s~gieP~~s~~y~r~~~~g~~~~vn~~l~~~l~~~g~~~~~~~~~i~~~~G 683 (811)
+++|++||+|||+++|||||||+|+|+|+|+||||+|+++|.|++.+|+|.++|++|+++|+++|+|++++++++....|
T Consensus 460 ~~~i~~~GlRNs~l~aiaPTgs~S~i~g~S~gieP~~a~~y~r~~~~g~~~~vn~~l~~~l~~~g~~~~~~~~~~~~~~g 539 (617)
T TIGR02506 460 RERIKEYGLRNSQLTALMPTASSSQLTGVTESIEPVFSNIFTKKTLSGEFLIPNKYLMKELEELGLWDADRRGDIVENVG 539 (617)
T ss_pred HHHHHHhCccccceeccCChHHHHHHcCCCCccCcccchheeEecCCceEEEecHHHHHHHHHcCCCHHHHHHHHHhhCC
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999988899
Q ss_pred cccccCCCchHHHhhhhhhccCChHHHHHHHHHhccccccccceeEeeCC-CCHHHHHHHHHHHHHcCCceEEEEecCc
Q 003561 684 SVQKIPEIPEELKMIYKTVWEIKQMTLVDMAVDRGCYIDQSQSLNIHMDQ-PNFKKVTSLHFRTWSRGLKTGMYYLRSR 761 (811)
Q Consensus 684 sv~~i~~~p~~~k~~f~ta~ei~~~~~i~~~a~~Q~~vDqs~S~~l~~~~-~~~~~l~~~~~~Awk~GlKt~~YY~r~~ 761 (811)
++|.+|.+|++++.+|+||+||+|++||+|||++|||||||||+|||+++ .+.++|.++|++|||+|||| |||||++
T Consensus 540 ~~~~~~~~~~~~~~~f~tA~di~~~~~i~~~a~~Q~~vDqsiS~tl~~~~~~~~~dv~~~y~~Aw~~GlK~-~YY~r~~ 617 (617)
T TIGR02506 540 SPQPIAAIPETLKYKYKTAYELDQEALIDMAADRQKFVDQSISLNLFLTEEVTAKDLLKLLLLAWKKGLKT-MYYCRSR 617 (617)
T ss_pred CccCCCCCChhHHHHhchHhcCCHHHHHHHHHHHhcccccccCCeeeCCCCCCHHHHHHHHHHHHHcCCCE-EEEeecC
Confidence 99999999999999999999999999999999999999999999999997 89999999999999999999 9999985
No 15
>PRK08188 ribonucleotide-diphosphate reductase subunit alpha; Validated
Probab=100.00 E-value=8.7e-153 Score=1338.68 Aligned_cols=589 Identities=27% Similarity=0.451 Sum_probs=543.6
Q ss_pred ccCcChHHHH-HHHhcHHHHHHhhcccccCCCChhhHHHHHHhhcccc-CCc-ccCCHHHHHHHHHhHhccCCHHHHHHH
Q 003561 113 APLIADDIYE-IIMKNAACLDSEIIYDRDFDYDYFGFKTLERSYLLKV-QGK-VVERPQHMLMRVSIGIHKDDIDSAIKT 189 (811)
Q Consensus 113 ~~l~~~~~~~-~~~~~~~~l~~~i~~~rd~~~~y~g~~~l~~~Yl~k~-~g~-~~E~pq~~~~RvA~~l~~~~~~~~~~~ 189 (811)
.+++++++++ |..+++++|.+.|+++||..|+|+|+.+|+++|++|. +|+ .+|+||+++++||++++..+.+++++|
T Consensus 69 ~~~y~~~~~~~y~~~~i~~l~~~i~~~~~~~~~y~ga~~~~~~Y~lk~~~~~~~~E~~~~r~~~vA~~la~~~~~~a~~~ 148 (714)
T PRK08188 69 EGYYEEEVLDQYSRNFVKTLFDHAYAKKFRFQTFLGAFKYYTSYTLKTFDGKRYLERFEDRVCMVALTLAQGDETLARQL 148 (714)
T ss_pred ccchhHHHHHhcCHHHHHHHHHHhhhccccccCcHhHHHHHHhhceecCCCCEEecCHHHHHHHHHHHHhcCCHHHHHHH
Confidence 3467777775 7788999999999999999999999999999999994 665 479999999999999999888899999
Q ss_pred HHHHhcCcEecccccccccCCC-CCCCCccccccccCCCHHHHHHHHHHHHHHHHhcCCcceeeceecCCCCcccCCCCc
Q 003561 190 YHMMSQRWFTHASPTLFNAGTP-RPQLSSCFLVCMKDDSIEGIYETLKECAVISKSAGGIGVSVHNIRATGSYIRGTNGT 268 (811)
Q Consensus 190 y~~ls~~~~~~atP~l~naGt~-~~~lsSCfl~~~~~Ds~~~I~~~~~~~a~isk~ggGvG~~~s~iR~~Gs~I~g~~g~ 268 (811)
|++|++++|+||||||+|+|++ ++||+||||+.+ +||++||++++++++++||.|||||+|+|+|||+|++|+|++|.
T Consensus 149 y~~l~~~~f~paTPtl~NaG~~~~g~lsSCFl~~v-~DslesI~~~~~~~~~lsK~GGGVG~~ls~lR~~Gs~Ikg~~g~ 227 (714)
T PRK08188 149 VDEIISGRFQPATPTFLNCGKKQRGELVSCFLLRI-EDNMESIGRSINSALQLSKRGGGVALLLSNLREAGAPIKRIENQ 227 (714)
T ss_pred HHHHHcCCEecCCcceecCCCCCCCcceeEEecCC-CCCHHHHHHHHHHHHHHHhhCCeEEEeccccCCCCCcccCCCCC
Confidence 9999999999999999999998 899999999987 89999999999999999999999999999999999999999999
Q ss_pred cCCcccHHHHHHHHHHHHhhCCCccccceEeeccCCcccHHHHHHhhhcCCcccccccccceecccCHHHHHHHHcCCce
Q 003561 269 SNGIVPMLRVFNDTARYVDQGGGKRKGAFAVYLEPWHADIFEFLNLKKNHGKEEHRARDLFYALWVPDLFMERVQTNGQW 348 (811)
Q Consensus 269 ssG~vp~lk~~~~~~~~v~QgG~~R~ga~~vyl~~wH~DI~~Fl~~K~~~g~e~~r~~~l~~sv~ipD~Fm~rv~~~~~W 348 (811)
|||||||||+||+++.+++||| +|+||.|+||++|||||++||++|+++|++..|++++++||||||+||++|++|++|
T Consensus 228 ssGvvp~mkl~d~~~~~v~Q~G-~R~GA~avyL~~~HpDI~~FL~~K~~~gde~~R~~~l~~gV~ipD~Fme~v~~~~~~ 306 (714)
T PRK08188 228 SSGVIPVMKLLEDAFSYANQLG-ARQGAGAVYLHAHHPDILRFLDTKRENADEKIRIKTLSLGVVIPDITFELAKENEDM 306 (714)
T ss_pred CCCHHHHHHHHHHHHHHHHhcC-CCCCceeEEecCCCchHHHHHHHhhcccchhhhhhhchHHhccCHHHHHHHHcCCCe
Confidence 9999999999999999999999 899999999999999999999999999999999999999999999999999999999
Q ss_pred EEecCCCCCcchhhhhhHHH-----HHHHHHHhcC-ceeEEEeHHHHHHHHHHHHHhhCCceeEehhhhhhhcCCCCCCc
Q 003561 349 SLFCPNEASGLADCWGAEFE-----KLYTHYEREG-KAKKVVQAQNLWFEILTSQIETGTPYMLFKDTCNRKSNQQNLGT 422 (811)
Q Consensus 349 ~Lf~P~~~~~L~~~yg~eF~-----~~Y~~~e~~~-~~~~~v~Ar~L~~~I~~~~~etG~P~i~f~D~~Nr~~~~~~~g~ 422 (811)
+||+|+++ .+.||++|+ +.|+++++++ ..+++|+||+||++|++++|+||+|||+|+|++||+||++ |+
T Consensus 307 ~Lf~P~~~---~~~yG~~f~~~~~~~~Y~~~v~~~~i~k~~I~Arel~~~I~~~~~etG~Pyi~f~D~vNr~np~~--G~ 381 (714)
T PRK08188 307 YLFSPYDV---ERVYGKPFADISVTEKYDEMVADERIRKKKINAREFFQTLAEIQFESGYPYIMFEDTVNRANPIA--GR 381 (714)
T ss_pred EeeCcchh---hhhhcccccchhHHHHHHHHHhCCcceeeEeeHHHHHHHHHHHHHHhCCCeEEeHHHHHhhCCCC--Cc
Confidence 99999975 578998885 6688888764 4578999999999999999999999999999999999986 99
Q ss_pred eeeecCCccccccCCCC------------cceeEEecccccchhcccCCCCCCCCCccccccCCCCCccCCHHHHHHHHH
Q 003561 423 IKSSNLCTEIIEYTSPT------------ETAVCNLASIALPRFVREKDVPVESHPSRIVGSRGSKNRFFDFEKLAEVTA 490 (811)
Q Consensus 423 I~~sNlC~EI~~~~~~~------------e~~~CNL~SInL~~~v~~~~~~~~~~~~~~~g~~~~~~~~fD~~~L~~~v~ 490 (811)
|.+||||+||+|+++|+ +.++|||+||||++|+ ||++|+++|+
T Consensus 382 I~~SNlC~EI~q~~~p~~~~~~~~~~~~g~~~sCNLgSiNL~~~~-------------------------d~~~l~~~v~ 436 (714)
T PRK08188 382 INMSNLCSEILQVNSASEYNEDLSYAHIGKDISCNLGSLNIAHTM-------------------------DSPDFGRTVE 436 (714)
T ss_pred eeeecccccccccCChhhhccccccccCCCcceEEChhhhHHHhc-------------------------CHHHHHHHHH
Confidence 99999999999998774 3479999999999986 4688999999
Q ss_pred HHHHHHHHHHhcCC-CcHHHHHHHhhccCCeeeecchHHHHHHHcCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 003561 491 IVTENLNKIIDVNY-YPVETARRSNLRHRPIGIGVQGLADTFILLGMAFESPEAQQLNKDIFETIYYHALKTSSEIAAKE 569 (811)
Q Consensus 491 ~avr~LD~vId~~~-~p~~~~~~~~~~~R~iGlGv~Glad~L~~~gi~y~S~ea~~l~~~i~e~i~~~a~~aS~eLAke~ 569 (811)
++||+||+|||.+. +|+|+++++|+++|+||||+||||++|+++||+|+|+||++|+++|||.|+|+|++||++||+|+
T Consensus 437 ~avR~LD~ViD~~~~~p~p~~~~~n~~~R~IGLGvmGl~~~La~~gi~Y~S~ea~~~~~~ife~i~y~A~~aS~eLAkEr 516 (714)
T PRK08188 437 TAIRALTAVSDMSHIRSVPSIEKGNAASHAIGLGQMNLHGYLAREGIFYGSEEALDFTNIYFYTVTYHALRASNLLARER 516 (714)
T ss_pred HHHHHHHHHHHhhcCCCCchHHHHHHhcCChhccHhHHHHHHHHcCCCcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 99999999999997 69999999999999999999999999999999999999999999999999999999999999999
Q ss_pred C-CCCCCCCCccccCCCCccc-----ccc--------------CCCCcccHHHHHHHHHhcCccccceeccCCCCccccc
Q 003561 570 G-PYETYHNSPVSKGILQPDM-----WNV--------------IPSDRWDWGVLRDMISKNGVRNSLLVAPMPTASTSQI 629 (811)
Q Consensus 570 G-~~~~f~~S~~~~G~l~~d~-----~~~--------------~~~~~~dW~~Lr~~i~~~G~RNs~l~AiaPT~stS~i 629 (811)
| +||.|++|+|++|.+ |+. |.. ..+...+|++|+++|++||+|||+++|||||||||+|
T Consensus 517 G~~f~~f~~S~~~~G~~-f~~y~~~~~~~~~~~v~~~~~~~~~~~p~~~~W~~L~~~i~~~GlRNs~l~AiAPTgSiS~i 595 (714)
T PRK08188 517 GETFAGFEQSKYASGEY-FDKYTQQDWQPKTAKVRELFARAGITIPTQEDWAQLRDDVMRHGIYNQNLQAVPPTGSISYI 595 (714)
T ss_pred CCCCCCcccChhhccch-hhhcchhccCcchhhhhhhhhhcccCCCcHHhHHHHHHHHHHhCcccceeeeeCCcchHHHH
Confidence 9 599999999999998 443 321 1123568999999999999999999999999999999
Q ss_pred cCCCccccccccceeEEEcc-cCceEEeChHHHHHHHHcCCCcHHHhhhhhccCCcccccCCCchHHHhhhhhhccCChH
Q 003561 630 LGNNECFEPYTSNIYSRRVL-SGEFVVVNKHLLHDLTEMGIWSPTIKNKIIYDDGSVQKIPEIPEELKMIYKTVWEIKQM 708 (811)
Q Consensus 630 ~g~s~gieP~~s~~y~r~~~-~g~~~~vn~~l~~~l~~~g~~~~~~~~~i~~~~Gsv~~i~~~p~~~k~~f~ta~ei~~~ 708 (811)
+|+|+||||+++++|.|+.. .|++..++| .++++.+++|+|||||+|+
T Consensus 596 ~~~T~sIePi~s~v~~R~~~~~g~~~~~~p-------------------------------~l~~~~~~~y~tA~ei~~~ 644 (714)
T PRK08188 596 NHSTSSIHPIVSKIEIRKEGKIGRVYYPAP-------------------------------YMTNDNLEYYQDAYEIGPE 644 (714)
T ss_pred cCCCCCcCcchhhheeeeccccceEEeeCc-------------------------------ccchhhHhHhCcHHhCCHH
Confidence 99999999999999999853 366655544 3455667899999999999
Q ss_pred HHHHHHHHhccccccccceeEeeCC-CCHHHHHHHHHHHHHcCCceEEEEecCcccccc
Q 003561 709 TLVDMAVDRGCYIDQSQSLNIHMDQ-PNFKKVTSLHFRTWSRGLKTGMYYLRSRAAADA 766 (811)
Q Consensus 709 ~~i~~~a~~Q~~vDqs~S~~l~~~~-~~~~~l~~~~~~Awk~GlKt~~YY~r~~~~~~~ 766 (811)
++|+|+|++|||||||||+|||+++ .+.++|.++|++|||+|||| +||+|+++.+..
T Consensus 645 ~~I~~~A~~Qk~VDQsiS~tl~~~~~~t~~dl~~~y~~Awk~GlKt-iYY~R~~~~~~~ 702 (714)
T PRK08188 645 KIIDTYAAATQHVDQGLSLTLFFPDTATTRDINKAQIYAWRKGIKT-LYYIRLRQMALE 702 (714)
T ss_pred HHHHHHHHHcccchhhhcCceecCCCCCHHHHHHHHHHHHHcCCCe-EEEEeecccccc
Confidence 9999999999999999999999996 58999999999999999999 899999766543
No 16
>PRK06406 ribonucleotide-diphosphate reductase subunit alpha; Validated
Probab=100.00 E-value=2.6e-151 Score=1335.27 Aligned_cols=650 Identities=30% Similarity=0.437 Sum_probs=584.3
Q ss_pred eEEecCCceeecChHHHHHHHHHHHccCCC-CCCCHHHHHHHHHhhcCC--CCCHHHHHHHHHHHHHhhccCCCChHHHH
Q 003561 2 YVVKRDGRQEAVHFDKITARLKKLSYGLST-EHCDPVLVSQKVCAGVYK--GVTTSQLDELAAETAAAMTTNHPDYASLA 78 (811)
Q Consensus 2 ~V~KrdG~~e~~~~~ki~~~i~~~~~~l~~-~~v~~~~i~~~~~~~l~~--gitt~ei~~~~~~~a~~~~~~~p~y~~lA 78 (811)
+|+||||+.++||.+||..+|.+|...... +.-....+..+|...+.+ .++++|||+++..+..+.-...|+|..+|
T Consensus 6 ~ViKRDG~~v~Fd~~KI~~AI~kA~~av~~~~~~~~~~l~~~V~~~l~~~~~~sVeeIQDiVE~~L~~~g~~~~~~~~vA 85 (771)
T PRK06406 6 EVIKRDGTVVPFDKKKIAMAIYKAMLSVKNGSMEDAEELTDKVVERLKKYERPTVEQIQDIVEKVLMTKKINGKDFTDVA 85 (771)
T ss_pred eEEecCCccCCCCHHHHHHHHHHHHHhhCCCcHHHHHHHHHHHHHHHhccCCCCHHHHHHHHHHHHHhCCCcccchHHHH
Confidence 799999999999999999999998765531 111234566777676665 49999999999988877666788888877
Q ss_pred HHHHHHHHHHHhhhhhhHHHHHHHHhhhhccCCcccCcChHHHHHHHhcHHHHHHhhcccccCCCChhhHHHHHHhhccc
Q 003561 79 ARIAVSNLHKNTKKSFSETIKDMYNHYNERSGLKAPLIADDIYEIIMKNAACLDSEIIYDRDFDYDYFGFKTLERSYLLK 158 (811)
Q Consensus 79 ~rl~~~~l~k~~~~~~~~~~~~l~~~~~~~~~~~~~l~~~~~~~~~~~~~~~l~~~i~~~rd~~~~y~g~~~l~~~Yl~k 158 (811)
....++..+++ ...+....|+.+||+.|++.|+++|.+|||+|
T Consensus 86 KaYI~YR~~r~-------------------------------------~~r~~k~~~~~~~~~~~~~~a~~vl~~RYl~k 128 (771)
T PRK06406 86 KSYILYREKRR-------------------------------------KIREEKELIGVKDDLKLTLNAIKVLEARYLLK 128 (771)
T ss_pred HHHHHHHHHHH-------------------------------------hccccccccCcccccccCHHHHHHHHHHHhcc
Confidence 55422111110 00011235777899999999999999999999
Q ss_pred -cCCcccCCHHHHHHHHHhHhccCC-------------------------------------------------------
Q 003561 159 -VQGKVVERPQHMLMRVSIGIHKDD------------------------------------------------------- 182 (811)
Q Consensus 159 -~~g~~~E~pq~~~~RvA~~l~~~~------------------------------------------------------- 182 (811)
.+|+++|+||+||+|||++++..+
T Consensus 129 d~~g~~~E~p~~~f~rvA~~va~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 208 (771)
T PRK06406 129 DEDGKIIETPRQMFRRVARHIAIVEALYDDEVYDKTGKQKENAEVIGKLSVTQEDMLKRAFRYLKEEGIMKGDFEEFLDF 208 (771)
T ss_pred CCCCCEecCHHHHHHHHHHHHcchhhcccchhcccccccccccccccchhhhhhhhhhhhhhhhhhhccccccchhhhhh
Confidence 578899999999999999988532
Q ss_pred --------HHHHHHHHHHHhcCcEecccccccccCCCCCCCCccccccccCCCHHHHHHHHHHHHHHHHhcCCcceeece
Q 003561 183 --------IDSAIKTYHMMSQRWFTHASPTLFNAGTPRPQLSSCFLVCMKDDSIEGIYETLKECAVISKSAGGIGVSVHN 254 (811)
Q Consensus 183 --------~~~~~~~y~~ls~~~~~~atP~l~naGt~~~~lsSCfl~~~~~Ds~~~I~~~~~~~a~isk~ggGvG~~~s~ 254 (811)
.+++++||++|++++|+|+||||+|||++++|||||||+++ +||++||+++++++++++|.|||||+|||+
T Consensus 209 ~~~~~~~~~~~~~~fy~~ms~~~f~pasP~l~NaG~~~~qlssCFvl~v-~Dsle~I~~~~~~~a~i~k~GGGvG~~~S~ 287 (771)
T PRK06406 209 LKTKWDSIEEYINKFEEVMSNLKFVPNSPTLMNAGTKLGQLSACFVLPV-PDSIEGIFNALKYTAMIHKSGGGTGFSFSR 287 (771)
T ss_pred hccchhhHHHHHHHHHHHHHcCCEecCCHHHhcCCCCCCCeeeEEeCCC-CCCHHHHHHHHHHHHHHHhcCCceEEeccc
Confidence 23578999999999999999999999999999999999987 899999999999999999999999999999
Q ss_pred ecCCCCcccCCCCccCCcccHHHHHHHHHHHHhhCCCccccceEeeccCCcccHHHHHHhhhcCCcccccccccceeccc
Q 003561 255 IRATGSYIRGTNGTSNGIVPMLRVFNDTARYVDQGGGKRKGAFAVYLEPWHADIFEFLNLKKNHGKEEHRARDLFYALWV 334 (811)
Q Consensus 255 iR~~Gs~I~g~~g~ssG~vp~lk~~~~~~~~v~QgG~~R~ga~~vyl~~wH~DI~~Fl~~K~~~g~e~~r~~~l~~sv~i 334 (811)
|||+|++|+|++|.||||||||++||+++.+|+||| +||||.|+||++|||||++||++|... ..+++++|+||+|
T Consensus 288 iRp~G~~i~~~~g~ssG~vsfm~~~d~~~~~i~QGG-~RrGA~m~~L~~~HpDI~eFI~~K~~~---~~~~~n~n~sV~i 363 (771)
T PRK06406 288 LRPKDDIVASTKGVASGPLSFMRIFDVTTDVIKQGG-KRRGANMGILSYHHPDIMEFITSKDSE---NKVLSNFNISVAV 363 (771)
T ss_pred cCCCCCccCCCCCcCCChhhHHHHHHHHHHHHHcCC-ccccceEEEecCCCccHHHHHHhcccc---cchhhcCceeEEe
Confidence 999999999999999999999999999999999998 899999999999999999999999643 2457899999999
Q ss_pred CHHHHHHHHcCCceEEecCCCCCcchhhhhhHHHHHHHHHHhcCceeEEEeHHHHHHHHHHHHHhhCCceeEehhhhhhh
Q 003561 335 PDLFMERVQTNGQWSLFCPNEASGLADCWGAEFEKLYTHYEREGKAKKVVQAQNLWFEILTSQIETGTPYMLFKDTCNRK 414 (811)
Q Consensus 335 pD~Fm~rv~~~~~W~Lf~P~~~~~L~~~yg~eF~~~Y~~~e~~~~~~~~v~Ar~L~~~I~~~~~etG~P~i~f~D~~Nr~ 414 (811)
||+||++|++|++|+|++|+. |...++|+||+||++|++++|+||+|||+|+|++|++
T Consensus 364 ~D~FM~~v~~d~~~~L~~P~~----------------------g~~~~~v~AreL~~~I~~~a~~tGePgi~F~D~iNr~ 421 (771)
T PRK06406 364 TDEFFDKLDNDDYYPLRNPRN----------------------GKEVKRIKARQVWDLIITQAWKTGDPGVIFLDEINRK 421 (771)
T ss_pred CHHHHHHHHcCCCeEeecCCC----------------------CceeeeecHHHHHHHHHHHHHHHCCCeEEEhHhHHhc
Confidence 999999999999999999973 4568899999999999999999999999999999999
Q ss_pred cCCCCCCceeeecCCccccccCCCCcceeEEecccccchhcccCCCCCCCCCccccccCCCCCccCCHHHHHHHHHHHHH
Q 003561 415 SNQQNLGTIKSSNLCTEIIEYTSPTETAVCNLASIALPRFVREKDVPVESHPSRIVGSRGSKNRFFDFEKLAEVTAIVTE 494 (811)
Q Consensus 415 ~~~~~~g~I~~sNlC~EI~~~~~~~e~~~CNL~SInL~~~v~~~~~~~~~~~~~~~g~~~~~~~~fD~~~L~~~v~~avr 494 (811)
||+++.|+|.+||||+||++++ +++|||+||||++||.+ ..|||+.|+++|+++||
T Consensus 422 n~~~~~G~I~~tNpCgEq~L~p----~~sCnLgSINL~~~v~~--------------------~~~D~~~l~~~v~~avr 477 (771)
T PRK06406 422 NPVKNLGEIESTNPCGEQPLLP----YESCNLGSINLSKFVEN--------------------GKIDWDRLRETVHIATR 477 (771)
T ss_pred CCCccCCceEeeccccccccCC----CcceechhhhHHHHhcc--------------------cCCCHHHHHHHHHHHHH
Confidence 9999999999999999997753 45999999999999964 26999999999999999
Q ss_pred HHHHHHhcCCCcHHHHHHHhhccCCeeeecchHHHHHHHcCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCC
Q 003561 495 NLNKIIDVNYYPVETARRSNLRHRPIGIGVQGLADTFILLGMAFESPEAQQLNKDIFETIYYHALKTSSEIAAKEGPYET 574 (811)
Q Consensus 495 ~LD~vId~~~~p~~~~~~~~~~~R~iGlGv~Glad~L~~~gi~y~S~ea~~l~~~i~e~i~~~a~~aS~eLAke~G~~~~ 574 (811)
|||+|||.+.||+|+++++++++|+||||+|||||+|+++|++|+|+||++|+++||++|+++|+++|++||+|+|+||.
T Consensus 478 ~LDnvID~~~yPl~~~~~~~~~~R~IGLGvmGlad~L~~lgi~YdS~eA~~l~~~i~~~i~~~a~~aS~~LAkErG~fp~ 557 (771)
T PRK06406 478 FLDNVIDANKFPVPQIKEMTRMTRKIGLGVMGFADMLIKLGIPYNSEEALEIAEKVMKFINEESHRASQKLAEERGVFPA 557 (771)
T ss_pred HHHHHHhcccCchHHHHHHHhhcCCceechHHHHHHHHHcCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCC
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCCccccCCCCccccccCCCCcccHHHHHHHHHhcCccccceeccCCCCccccccCCCccccccccceeEEEcccCc-e
Q 003561 575 YHNSPVSKGILQPDMWNVIPSDRWDWGVLRDMISKNGVRNSLLVAPMPTASTSQILGNNECFEPYTSNIYSRRVLSGE-F 653 (811)
Q Consensus 575 f~~S~~~~G~l~~d~~~~~~~~~~dW~~Lr~~i~~~G~RNs~l~AiaPT~stS~i~g~s~gieP~~s~~y~r~~~~g~-~ 653 (811)
|++|+|.+ ...|+|||+++|||||||||+|+|+|+||||+|+++|.|++..|+ +
T Consensus 558 f~~s~~~~-------------------------~~~g~RNs~ltaiAPTgSiS~i~g~SsGIEP~fa~~y~R~v~~g~~~ 612 (771)
T PRK06406 558 WYGSEWEK-------------------------KGIKMRNSTTTTIAPTGTISIIAGCSSSIEPLFAIAFVRHVLNGQEL 612 (771)
T ss_pred cCccchhh-------------------------cCCcccccceeeeCCcchhhhhcCCCCccCccchhheEEEecCCcee
Confidence 99998842 124899999999999999999999999999999999999998885 7
Q ss_pred EEeChHHHHHHHHcCCCcHHHhhhhhccCCcccccCCCchHHHhhhhhhccCChHHHHHHHHHhccccccccceeEeeCC
Q 003561 654 VVVNKHLLHDLTEMGIWSPTIKNKIIYDDGSVQKIPEIPEELKMIYKTVWEIKQMTLVDMAVDRGCYIDQSQSLNIHMDQ 733 (811)
Q Consensus 654 ~~vn~~l~~~l~~~g~~~~~~~~~i~~~~Gsv~~i~~~p~~~k~~f~ta~ei~~~~~i~~~a~~Q~~vDqs~S~~l~~~~ 733 (811)
.++|++|.+.|++.|+|++++++.+. ++|++|++ .+|++++.+|+|||||+|++||+|||++|||||||||+|||+++
T Consensus 613 ~~vn~~l~~~l~~~g~~~~~~~~~i~-~~gs~~~~-~~p~~~~~~f~tA~dI~~~~~i~m~A~~Qk~vDqsiSkTinlp~ 690 (771)
T PRK06406 613 LEVNPLFEEITRKRGLYSEELMRKVA-ETGNLQNI-DVPEDIKRIFVTAHEIDPQWHVLMQATFQRYCDSGVSKTINLRY 690 (771)
T ss_pred EEecHHHHHHHHHcCCCcHHHHHHHH-hCCCcccc-cCChHHHhhcccHHhCCHHHHHHHHHHHcccccCcccCceecCC
Confidence 89999999999999999999999975 68999999 69999999999999999999999999999999999999999995
Q ss_pred -CCHHHHHHHHHHHHHcCCceEEEEecCcccccc
Q 003561 734 -PNFKKVTSLHFRTWSRGLKTGMYYLRSRAAADA 766 (811)
Q Consensus 734 -~~~~~l~~~~~~Awk~GlKt~~YY~r~~~~~~~ 766 (811)
++.++|.++|++||++||||+|||.-..+..+.
T Consensus 691 ~~t~~dv~~~y~~Aw~~GlKgitvYR~~s~~~qv 724 (771)
T PRK06406 691 DATPEDIAKAYRLAKDLHCKGITVYRDKSKTVQV 724 (771)
T ss_pred CCCHHHHHHHHHHHHHhCCCEEEEEcCCCcccce
Confidence 789999999999999999999999544444333
No 17
>PRK07306 ribonucleotide-diphosphate reductase subunit alpha; Validated
Probab=100.00 E-value=7.7e-152 Score=1335.92 Aligned_cols=586 Identities=26% Similarity=0.451 Sum_probs=539.9
Q ss_pred ccCcChHHHH-HHHhcHHHHHHhhcccccCCC-ChhhHHHHHHhhccc-cCCcc-cCCHHHHHHHHHhHhccCCHHHHHH
Q 003561 113 APLIADDIYE-IIMKNAACLDSEIIYDRDFDY-DYFGFKTLERSYLLK-VQGKV-VERPQHMLMRVSIGIHKDDIDSAIK 188 (811)
Q Consensus 113 ~~l~~~~~~~-~~~~~~~~l~~~i~~~rd~~~-~y~g~~~l~~~Yl~k-~~g~~-~E~pq~~~~RvA~~l~~~~~~~~~~ 188 (811)
.+++++++++ |..+++++|.++|++ +|+.| +|+|+.+|+++|++| .+|+. +|+||+++|++|++++..+.+++++
T Consensus 63 ~~~y~~~~~~~y~~~~i~~l~~~i~~-~~~~f~~~~ga~~~~~rY~lk~~~g~~~~E~~~~Rv~~~A~~la~~~~~~a~~ 141 (720)
T PRK07306 63 NDYIESAFIKKYRPEFIEKLYQFLKA-QNFRFKSFMAAYKFYNQYALKTNDGEYYLENFEDRVLFNALYFADGDEDLAKD 141 (720)
T ss_pred cChhHHHHHhhCCHHHHHHHHHHHhh-ccCcCcCHHHHHHHHHHhCccCCCCCEeccCHHHHHHHHHHHHccCCHHHHHH
Confidence 3468888875 788899999999997 89999 999999999999999 45665 7999999999999999888899999
Q ss_pred HHHHHhcCcEecccccccccCCC-CCCCCccccccccCCCHHHHHHHHHHHHHHHHhcCCcceeeceecCCCCcccCCCC
Q 003561 189 TYHMMSQRWFTHASPTLFNAGTP-RPQLSSCFLVCMKDDSIEGIYETLKECAVISKSAGGIGVSVHNIRATGSYIRGTNG 267 (811)
Q Consensus 189 ~y~~ls~~~~~~atP~l~naGt~-~~~lsSCfl~~~~~Ds~~~I~~~~~~~a~isk~ggGvG~~~s~iR~~Gs~I~g~~g 267 (811)
||++|++++|+||||||+|||++ ++||+||||+++ +||++||+++++++++++|.|||||+++|+|||+|++|+|++|
T Consensus 142 ~y~~ls~~~f~paTPtl~NaG~~~~~~lsSCFl~~v-~Dsl~sI~~~~~~~a~lsk~GGGvG~~~s~lR~~Gs~I~g~~g 220 (720)
T PRK07306 142 LADEMIHQRYQPATPSFLNAGRARRGELVSCFLIQV-TDDMNSIGRSINSALQLSRIGGGVGINLSNLREAGAPIKGYEG 220 (720)
T ss_pred HHHHHHhCCeecCCCCeecCCCCCCCCeeeEEeCCC-CCChHHHHHHHHHHHHHHhcCCeeEecccccCCCCCcccCCCC
Confidence 99999999999999999999997 589999999986 8999999999999999999999999999999999999999999
Q ss_pred ccCCcccHHHHHHHHHHHHhhCCCccccceEeeccCCcccHHHHHHhhhcCCcccccccccceecccCHHHHHHHHcCCc
Q 003561 268 TSNGIVPMLRVFNDTARYVDQGGGKRKGAFAVYLEPWHADIFEFLNLKKNHGKEEHRARDLFYALWVPDLFMERVQTNGQ 347 (811)
Q Consensus 268 ~ssG~vp~lk~~~~~~~~v~QgG~~R~ga~~vyl~~wH~DI~~Fl~~K~~~g~e~~r~~~l~~sv~ipD~Fm~rv~~~~~ 347 (811)
.|+|+|||||+||+++.+++||| +|+||+|+||++|||||++||++|+++|++..|++++++||||||+||++|++|++
T Consensus 221 ~ssGvvp~mk~~d~~~~~v~QgG-~RrGA~~vyL~~wHpDI~~FL~~K~~~gde~~R~~nl~~~v~vpD~Fm~~v~~~~~ 299 (720)
T PRK07306 221 AASGVVPVMKLFEDSFSYSNQLG-QRQGAGVVYLNVFHPDIIAFLSTKKENADEKVRVKTLSLGVTVPDKFYELARKNED 299 (720)
T ss_pred CCCCHHHHHHHHHHHHHHHhcCC-CcCcceEEEEeCCCccHHHHHHHhcccccchhhhcccchhhccCHHHHHHHHcCCC
Confidence 99999999999999999999998 99999999999999999999999999999999999999999999999999999999
Q ss_pred eEEecCCCCCcchhhhhhHH-----HHHHHHHHhcCc-eeEEEeHHHHHHHHHHHHHhhCCceeEehhhhhhhcCCCCCC
Q 003561 348 WSLFCPNEASGLADCWGAEF-----EKLYTHYEREGK-AKKVVQAQNLWFEILTSQIETGTPYMLFKDTCNRKSNQQNLG 421 (811)
Q Consensus 348 W~Lf~P~~~~~L~~~yg~eF-----~~~Y~~~e~~~~-~~~~v~Ar~L~~~I~~~~~etG~P~i~f~D~~Nr~~~~~~~g 421 (811)
|+||+|+++ .++||++| ++.|+++++++. .+++|+||+||++|++++|+||+|||+|+|++||+||+ .|
T Consensus 300 w~Lf~P~~~---~~~yG~~f~~~~~~~~Y~~~~~~~~i~~~~i~AreL~~~I~~~~~etG~Pyi~f~D~iNr~np~--~g 374 (720)
T PRK07306 300 MYLFSPYSV---EKEYGVPFNYVDITKEYDELVANPNIRKTKIKARDLETEISKLQQESGYPYIINIDTANRANPI--DG 374 (720)
T ss_pred eEEeCcchh---hhhcCccccchhHHHHHHHHhhcccceeeEeeHHHHHHHHHHHHHHhCCCeEEeHHHHHhhCCC--CC
Confidence 999999875 57899988 577888887654 57899999999999999999999999999999999998 49
Q ss_pred ceeeecCCccccccCCCC------------cceeEEecccccchhcccCCCCCCCCCccccccCCCCCccCCHHHHHHHH
Q 003561 422 TIKSSNLCTEIIEYTSPT------------ETAVCNLASIALPRFVREKDVPVESHPSRIVGSRGSKNRFFDFEKLAEVT 489 (811)
Q Consensus 422 ~I~~sNlC~EI~~~~~~~------------e~~~CNL~SInL~~~v~~~~~~~~~~~~~~~g~~~~~~~~fD~~~L~~~v 489 (811)
+|.+||||+||+|+++|. +.++|||+||||++|++. ..|+++|
T Consensus 375 ~I~~SNlC~EI~q~~~p~~~~~~~~~~~~g~~~~CNLgSINL~~~v~~-------------------------~~~~~~v 429 (720)
T PRK07306 375 KIIMSNLCSEILQVQTPSLINDAQEYVKMGTDISCNLGSTNIVNMMTS-------------------------PDFGRSI 429 (720)
T ss_pred ceeecccccccccCCCchhhccccccccCCCccEEECHHHHHHHHhcc-------------------------ccHHHHH
Confidence 999999999999998874 347999999999999864 3578999
Q ss_pred HHHHHHHHHHHhcCC-CcHHHHHHHhhccCCeeeecchHHHHHHHcCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 003561 490 AIVTENLNKIIDVNY-YPVETARRSNLRHRPIGIGVQGLADTFILLGMAFESPEAQQLNKDIFETIYYHALKTSSEIAAK 568 (811)
Q Consensus 490 ~~avr~LD~vId~~~-~p~~~~~~~~~~~R~iGlGv~Glad~L~~~gi~y~S~ea~~l~~~i~e~i~~~a~~aS~eLAke 568 (811)
+++||+||+|||.+. ||+|+++++|+++|+||||+|||||+|+++||+|+|+||++|+++|||.|+|+|++||++||+|
T Consensus 430 ~~avR~LDnViD~~~~~p~p~~~~~n~~~R~IGLGvmGla~~La~~gi~Y~S~eA~~~~~~i~e~i~y~A~~aS~eLA~E 509 (720)
T PRK07306 430 ETMVRALTFVTDSSNIDAVPSIKHGNSQAHTIGLGAMGLHSYLAQNHIEYGSPESLEFTSIYFMLLNYWTLVASNNIARE 509 (720)
T ss_pred HHHHHHHHHHHHhhCCCCChHHHHHHHhcCchhhhHHHHHHHHHHcCCCcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 999999999999986 7999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hC-CCCCCCCCccccCCCCccccccC---C--------------CCcccHHHHHHHHHhcCccccceeccCCCCcccccc
Q 003561 569 EG-PYETYHNSPVSKGILQPDMWNVI---P--------------SDRWDWGVLRDMISKNGVRNSLLVAPMPTASTSQIL 630 (811)
Q Consensus 569 ~G-~~~~f~~S~~~~G~l~~d~~~~~---~--------------~~~~dW~~Lr~~i~~~G~RNs~l~AiaPT~stS~i~ 630 (811)
+| +||.|++|+|++|.+ ||.|... | +...+|++||++|++||+|||+++|||||+|||+|+
T Consensus 510 rG~~fp~f~~S~~~~G~~-f~~~~~~~~~~~~~~v~~~~~~~~~p~~~~W~~Lr~~i~~~GlRNs~l~AiAPTgSiS~i~ 588 (720)
T PRK07306 510 RGETFHNFEKSKYADGSY-FDKYVTGDFVPKSDKVKELFKGIFIPTAADWAALRDAVMKDGLYHQNRLAVAPNGSISYIN 588 (720)
T ss_pred hCCCCCCcCcChhhccch-hhhhhhcccCcchhhHHHhhhccCCCchhhHHHHHHHHHHhCcccccceeeCCccHHHHHh
Confidence 99 699999999999998 6766321 1 234689999999999999999999999999999999
Q ss_pred CCCccccccccceeEEEcc-cCceEEeChHHHHHHHHcCCCcHHHhhhhhccCCcccccCCCchHHHhhhhhhccCChHH
Q 003561 631 GNNECFEPYTSNIYSRRVL-SGEFVVVNKHLLHDLTEMGIWSPTIKNKIIYDDGSVQKIPEIPEELKMIYKTVWEIKQMT 709 (811)
Q Consensus 631 g~s~gieP~~s~~y~r~~~-~g~~~~vn~~l~~~l~~~g~~~~~~~~~i~~~~Gsv~~i~~~p~~~k~~f~ta~ei~~~~ 709 (811)
|+|+||||+|+++|+|... .|++. ...|.+|++.+++|+|||||+|++
T Consensus 589 g~S~gIePi~s~v~~r~~~~~g~~~-------------------------------~~~p~l~~~~~~~f~tA~ei~~~~ 637 (720)
T PRK07306 589 DTSASIHPITQRIEERQEKKIGKIY-------------------------------YPAPGLSTETIPYYTSAYDMDMRK 637 (720)
T ss_pred CCCCccccchhhHhhhhhhcCCcee-------------------------------ccCCCCchhHHHHhCcHHhCCHHH
Confidence 9999999999999987532 13221 134778888999999999999999
Q ss_pred HHHHHHHhccccccccceeEeeCCC---------------CHHHHHHHHHHHHHcCCceEEEEecCcccc
Q 003561 710 LVDMAVDRGCYIDQSQSLNIHMDQP---------------NFKKVTSLHFRTWSRGLKTGMYYLRSRAAA 764 (811)
Q Consensus 710 ~i~~~a~~Q~~vDqs~S~~l~~~~~---------------~~~~l~~~~~~Awk~GlKt~~YY~r~~~~~ 764 (811)
+|+|+|++|||||||||+|||++++ +.++|.++|++|||+|||| +||+|+....
T Consensus 638 ~I~~~A~~Qk~VDQsiS~tl~~~~~~~~~~~~~~~~~~~~t~~~l~~~~~~Awk~GlKt-~YY~Rt~~~~ 706 (720)
T PRK07306 638 VIDVYAAATEHVDQGLSLTLFMRSTLPKGLYEWKDRTNKMTTRDLSILRNYAFNKGIKS-IYYIRTFTDD 706 (720)
T ss_pred HHHHHHHHhccchhhhcCccccCCccccccccccccccCCCHHHHHHHHHHHHHcCCCe-EEEEeecccc
Confidence 9999999999999999999999853 6799999999999999999 7999986553
No 18
>PRK09102 ribonucleotide-diphosphate reductase subunit alpha; Validated
Probab=100.00 E-value=3.6e-145 Score=1261.37 Aligned_cols=552 Identities=37% Similarity=0.587 Sum_probs=525.4
Q ss_pred HHHhhcccccCCCChhhHHHHHHhhccccCCcccCCHHHHHHHHHhHhccCCHHHHHHHHHHHhcCcEecccccccccCC
Q 003561 131 LDSEIIYDRDFDYDYFGFKTLERSYLLKVQGKVVERPQHMLMRVSIGIHKDDIDSAIKTYHMMSQRWFTHASPTLFNAGT 210 (811)
Q Consensus 131 l~~~i~~~rd~~~~y~g~~~l~~~Yl~k~~g~~~E~pq~~~~RvA~~l~~~~~~~~~~~y~~ls~~~~~~atP~l~naGt 210 (811)
.+..|+++||+.|+|+|+++|.+||++| + |+||++|||||++++..+.+++++||++|++++|+||||||+|+|+
T Consensus 9 ~~~~i~~~rd~~~~~~~~~~l~~rYl~~--~---Es~~~~~~RvA~~la~~~~~~~~~fy~~Ls~~~~~patP~l~naG~ 83 (601)
T PRK09102 9 FQINIDRSRDAWLTEFGKATLRDRYLLE--G---ESYQDLFARIAEAYADIDPEHAQRFYDYMSRGWFMPATPVLSNGGT 83 (601)
T ss_pred ccceecchhhcccCHHHHHHHHHhhCCC--C---CCHHHHHHHHHHHHhcCCHHHHHHHHHHHHcCCEEcCCHHHhcCCC
Confidence 3567999999999999999999999997 2 9999999999999998778899999999999999999999999999
Q ss_pred CCCCCCccccccccCCCHHHHHHHHHHHHHHHHhcCCcceeeceecCCCCcccCCCCccCCcccHHHHHHHHHHHHhhCC
Q 003561 211 PRPQLSSCFLVCMKDDSIEGIYETLKECAVISKSAGGIGVSVHNIRATGSYIRGTNGTSNGIVPMLRVFNDTARYVDQGG 290 (811)
Q Consensus 211 ~~~~lsSCfl~~~~~Ds~~~I~~~~~~~a~isk~ggGvG~~~s~iR~~Gs~I~g~~g~ssG~vp~lk~~~~~~~~v~QgG 290 (811)
++++++||||+.+ +||+++|+++++++++++|.|||||+|+|+|||+|++|+|. |.|+|+||||++||+++.+|+|||
T Consensus 84 ~~~~lssCfl~~v-~Dsle~I~~~~~~~a~l~k~gGGvG~~~s~iR~~Gs~I~~~-g~ssG~v~f~k~~d~~~~~i~qgg 161 (601)
T PRK09102 84 DRGLPISCFLNYV-EDSLEGIVNTWNENVWLAKRGGGIGSYWGNVRSIGEPIRNN-GKSSGIIPFIKVMDSLTLAISQGS 161 (601)
T ss_pred CCCCeeeEEeCCC-CCCHHHHHHHHHHHHHHHhhCCeeeecccccCCCCCccCCC-CCCCCHHHHHHHHHHHHHHHHcCC
Confidence 9999999999986 89999999999999999999999999999999999999986 899999999999999999999998
Q ss_pred CccccceEeeccCCcccHHHHHHhhhcCCcccccccccceecccCHHHHHHHHcCCceEEecCCCCCcchhhhhhHHHHH
Q 003561 291 GKRKGAFAVYLEPWHADIFEFLNLKKNHGKEEHRARDLFYALWVPDLFMERVQTNGQWSLFCPNEASGLADCWGAEFEKL 370 (811)
Q Consensus 291 ~~R~ga~~vyl~~wH~DI~~Fl~~K~~~g~e~~r~~~l~~sv~ipD~Fm~rv~~~~~W~Lf~P~~~~~L~~~yg~eF~~~ 370 (811)
+||||+|+||++|||||++||++|++.|++.+|++++|+||+|||+||++|++|++|+||+|++
T Consensus 162 -~RrGA~~~~L~~~HpDI~~Fi~~K~~~g~~~~r~~n~n~sv~i~D~FM~~v~~d~~w~L~~p~~--------------- 225 (601)
T PRK09102 162 -LRRGSFAVYLDIEHPEIEEFLDIRKPTGDPNRKALNLHHGVCVTDEFMEAVEDGDEWDLISPKD--------------- 225 (601)
T ss_pred -ccccceEEEEeCCCcCHHHHHHHhhccCcccccccCCeeEEEECHHHHHHHHcCCCeEEEcCCC---------------
Confidence 8999999999999999999999999999999999999999999999999999999999999974
Q ss_pred HHHHHhcCceeEEEeHHHHHHHHHHHHHhhCCceeEehhhhhhhcCCCC--CC-ceeeecCCccccccC-----CCCcce
Q 003561 371 YTHYEREGKAKKVVQAQNLWFEILTSQIETGTPYMLFKDTCNRKSNQQN--LG-TIKSSNLCTEIIEYT-----SPTETA 442 (811)
Q Consensus 371 Y~~~e~~~~~~~~v~Ar~L~~~I~~~~~etG~P~i~f~D~~Nr~~~~~~--~g-~I~~sNlC~EI~~~~-----~~~e~~ 442 (811)
+..+++|+||+||++|++++|+||+|||+|+|++|+++|.++ .| +|.+||||+||+|++ .+++++
T Consensus 226 -------~~~~~~i~Arel~~~I~~~~~~tG~Pgi~f~D~~N~~~p~~~~~~G~~I~~sNpC~Ei~l~~~~~~~~~~~~~ 298 (601)
T PRK09102 226 -------KSVIRTVKARDLWAKILETRIETGEPYLLFIDNVNRALPEVYKDLGLKVKASNLCSEITLPTGIDHLGEDRTA 298 (601)
T ss_pred -------CeEEEEecHHHHHHHHHHHHHHhCCCeEEEHHHhhhhCcccccccCCeEEeeCcccceecccccccCCCCcee
Confidence 346789999999999999999999999999999999998754 46 899999999999998 667899
Q ss_pred eEEecccccchhcccCCCCCCCCCccccccCCCCCccCCHHHHHHHHHHHHHHHHHHHh--cCCCc--HHHHHHHhhccC
Q 003561 443 VCNLASIALPRFVREKDVPVESHPSRIVGSRGSKNRFFDFEKLAEVTAIVTENLNKIID--VNYYP--VETARRSNLRHR 518 (811)
Q Consensus 443 ~CNL~SInL~~~v~~~~~~~~~~~~~~~g~~~~~~~~fD~~~L~~~v~~avr~LD~vId--~~~~p--~~~~~~~~~~~R 518 (811)
+|||+||||++|++ |+.|+++++.++|+||+||| ++.+| ++++++.++++|
T Consensus 299 ~CnL~SINL~~~v~-------------------------~~~~~~~v~~~vr~LDnvid~~i~~~p~~~~~~~~~~~~~R 353 (601)
T PRK09102 299 VCCLSSLNLEYYDE-------------------------WKDTDAFIEDLMRFLDNVLQDFIDKAPDEMERAKYSAMRER 353 (601)
T ss_pred eeeecceeHHHhcc-------------------------hhhHHHHHHHHHHHHHHHHHHHHhhCcchHHHHHHHHHhcC
Confidence 99999999999973 57889999999999999998 55554 999999999999
Q ss_pred CeeeecchHHHHHHHcCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCCCCCCccccCCCCccccccCCCCcc
Q 003561 519 PIGIGVQGLADTFILLGMAFESPEAQQLNKDIFETIYYHALKTSSEIAAKEGPYETYHNSPVSKGILQPDMWNVIPSDRW 598 (811)
Q Consensus 519 ~iGlGv~Glad~L~~~gi~y~S~ea~~l~~~i~e~i~~~a~~aS~eLAke~G~~~~f~~S~~~~G~l~~d~~~~~~~~~~ 598 (811)
+||||+|||||+|+++|++|+|+||++|+++|||.|+++|+++|++||+|+|+||.|
T Consensus 354 ~IGLGvmGlad~L~~lgi~Y~S~ea~~~~~~i~e~i~~~A~~aS~eLA~ErG~~p~~----------------------- 410 (601)
T PRK09102 354 SVGLGVMGFHSYLQSKMIPFESVMAKQWNKKIFKHIREQADKASKELAKEKGECPDA----------------------- 410 (601)
T ss_pred ccccchhHHHHHHHHcCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCcch-----------------------
Confidence 999999999999999999999999999999999999999999999999999999843
Q ss_pred cHHHHHHHHHhcC--ccccceeccCCCCcccccc-CCCccccccccceeEEEcccCceEEeChHHHHHHHHcCCCcHHHh
Q 003561 599 DWGVLRDMISKNG--VRNSLLVAPMPTASTSQIL-GNNECFEPYTSNIYSRRVLSGEFVVVNKHLLHDLTEMGIWSPTIK 675 (811)
Q Consensus 599 dW~~Lr~~i~~~G--~RNs~l~AiaPT~stS~i~-g~s~gieP~~s~~y~r~~~~g~~~~vn~~l~~~l~~~g~~~~~~~ 675 (811)
.++| +|||+++|||||||||+|+ |+|+||||+|+++|+|++.+|+|.++|++|.++|+++|+|+++++
T Consensus 411 ---------~~~G~~~RNs~l~aiAPTgS~S~i~~g~S~gIEP~fs~~y~R~~~~g~~~~~n~~l~~~l~~~g~~~~~~~ 481 (601)
T PRK09102 411 ---------AGYGVMRRFSTKMAIAPTASISIILGNTSPGIEPIAANYYTHKTLKGSFTVKNKYLEKLLEEKGKDTDEVW 481 (601)
T ss_pred ---------hhhCchhcccceeeeCCCcHHHHHcCCCCCCcccchhhheeEeecCceEEEECHHHHHHHHHcCCChHHHH
Confidence 3589 9999999999999999999 899999999999999999999999999999999999999999999
Q ss_pred hhhhccCCcccccCCCchHHHhhhhhhccCChHHHHHHHHHhccccccccceeEeeCC-CCHHHHHHHHHHHHHcCCceE
Q 003561 676 NKIIYDDGSVQKIPEIPEELKMIYKTVWEIKQMTLVDMAVDRGCYIDQSQSLNIHMDQ-PNFKKVTSLHFRTWSRGLKTG 754 (811)
Q Consensus 676 ~~i~~~~Gsv~~i~~~p~~~k~~f~ta~ei~~~~~i~~~a~~Q~~vDqs~S~~l~~~~-~~~~~l~~~~~~Awk~GlKt~ 754 (811)
++++.+.|++|++|.+|++++.+|+|||||+|++||+|||++|||||||||+|||+++ .+.++|.++|++|||+||||
T Consensus 482 ~~~~~~~gsvq~~~~~~~~~~~~f~tA~ei~~~~~i~~~A~~Q~~VDqsiS~tln~~~~~t~~dv~~~y~~Awk~GlK~- 560 (601)
T PRK09102 482 SSILTNEGSVQHLDFLSEEEKDVFKTAFEIDQRWIIELAADRQKYIDQAQSLNLFLPANVPKRDLNKLHFEAWKKGVKS- 560 (601)
T ss_pred HHHHhcCCCcccCccCChhHHhhcCcHhhCCHHHHHHHHHHHcccccccccCceecCCCCCHHHHHHHHHHHHHhCCCE-
Confidence 9999999999999999999999999999999999999999999999999999999996 58999999999999999999
Q ss_pred EEEecCcccccccccc
Q 003561 755 MYYLRSRAAADAIKFT 770 (811)
Q Consensus 755 ~YY~r~~~~~~~~~~~ 770 (811)
+||+|+++..+++++.
T Consensus 561 ~yy~R~~~~~~~~~~~ 576 (601)
T PRK09102 561 LYYQRSKSVQRADKVS 576 (601)
T ss_pred EEEEcCchhhhhHHhc
Confidence 8999999999998874
No 19
>PRK08665 ribonucleotide-diphosphate reductase subunit alpha; Validated
Probab=100.00 E-value=1.4e-141 Score=1259.48 Aligned_cols=553 Identities=31% Similarity=0.486 Sum_probs=521.0
Q ss_pred ccccCCCChhhHHHHHHhhccc-cCCcccCCHHHHHHHHHhHhccCC---------HHHHHHHHHHHhcCcEeccccccc
Q 003561 137 YDRDFDYDYFGFKTLERSYLLK-VQGKVVERPQHMLMRVSIGIHKDD---------IDSAIKTYHMMSQRWFTHASPTLF 206 (811)
Q Consensus 137 ~~rd~~~~y~g~~~l~~~Yl~k-~~g~~~E~pq~~~~RvA~~l~~~~---------~~~~~~~y~~ls~~~~~~atP~l~ 206 (811)
..+|..|+++|+++|.++||+| .+|+++|+||++|+|||+++|..+ .+++++||++|++++|+|+||||+
T Consensus 6 ~~~~~~~~~~a~~vl~~rYl~k~~~g~~~Es~~~~~~RVA~~la~~e~~~~~~~~~~~~~~~fy~~m~~~~f~pasP~l~ 85 (752)
T PRK08665 6 DLPDMKLTDNALTVLEKRYLKKDEDGKPIETPEDMFRRVARTIAAAELIYDSKADVEALADRFYDLMTSLEFLPNSPTLM 85 (752)
T ss_pred ccccCCcCHHHHHHHHHhhCccCCCCCcccCHHHHHHHHHHHHHhhccccCChhhHHHHHHHHHHHHHcCCeecCChHHh
Confidence 4578899999999999999999 478888999999999999998622 246889999999999999999999
Q ss_pred ccCCCCCCCCccccccccCCCHHHHHHHHHHHHHHHHhcCCcceeeceecCCCCcccCCCCccCCcccHHHHHHHHHHHH
Q 003561 207 NAGTPRPQLSSCFLVCMKDDSIEGIYETLKECAVISKSAGGIGVSVHNIRATGSYIRGTNGTSNGIVPMLRVFNDTARYV 286 (811)
Q Consensus 207 naGt~~~~lsSCfl~~~~~Ds~~~I~~~~~~~a~isk~ggGvG~~~s~iR~~Gs~I~g~~g~ssG~vp~lk~~~~~~~~v 286 (811)
|+|++++||+||||+++ +||+++|+++++++++++|.|||||+|||+|||+|++|+|++|+||||||||++||+++.+|
T Consensus 86 naG~~~~qlssCFv~~v-~Dsl~~I~~~~~~~a~i~k~GGGvG~~~S~lRp~G~~v~~~~g~asGpvsfm~~~d~~~~~v 164 (752)
T PRK08665 86 NAGRELGQLSACFVLPV-GDSIEEIFDAVKHAALIHKSGGGTGFSFSRLRPKNDRVGSTGGVASGPVSFMRVFDAATEAI 164 (752)
T ss_pred cCCCCCCcccceeecCC-CCCHHHHHHHHHHHHHHHhcCCeEEEeccccCCCCCcccCCCCCCCCchhHHHHHHHHHHHH
Confidence 99999999999999987 89999999999999999999999999999999999999999999999999999999999999
Q ss_pred hhCCCccccceEeeccCCcccHHHHHHhhhcCCcccccccccceecccCHHHHHHHHcCCceEEecCCCCCcchhhhhhH
Q 003561 287 DQGGGKRKGAFAVYLEPWHADIFEFLNLKKNHGKEEHRARDLFYALWVPDLFMERVQTNGQWSLFCPNEASGLADCWGAE 366 (811)
Q Consensus 287 ~QgG~~R~ga~~vyl~~wH~DI~~Fl~~K~~~g~e~~r~~~l~~sv~ipD~Fm~rv~~~~~W~Lf~P~~~~~L~~~yg~e 366 (811)
+||| +||||+|+||++|||||++||++|++.| +.+++|+||+|||+||++|++|++|+||+|++
T Consensus 165 ~qgG-~RRGA~m~~l~~~HpDI~~FI~~K~~~~----~~~~~n~sV~i~D~Fm~av~~d~~~~L~~p~~----------- 228 (752)
T PRK08665 165 KQGG-TRRGANMGILRVDHPDIMEFITCKEDNG----ELTNFNISVAITEAFMEAVEADEEYDLINPRT----------- 228 (752)
T ss_pred HhCC-cccceeEEEEcCCCccHHHHHHhcccCC----ccccceeeeccCHHHHHHHHcCCCeEEEcCCC-----------
Confidence 9999 8999999999999999999999998776 46899999999999999999999999999974
Q ss_pred HHHHHHHHHhcCceeEEEeHHHHHHHHHHHHHhhCCceeEehhhhhhhcCCCCCCceeeecCCccccccCCCCcceeEEe
Q 003561 367 FEKLYTHYEREGKAKKVVQAQNLWFEILTSQIETGTPYMLFKDTCNRKSNQQNLGTIKSSNLCTEIIEYTSPTETAVCNL 446 (811)
Q Consensus 367 F~~~Y~~~e~~~~~~~~v~Ar~L~~~I~~~~~etG~P~i~f~D~~Nr~~~~~~~g~I~~sNlC~EI~~~~~~~e~~~CNL 446 (811)
|...++|+||+||++|++++|+||+|||+|+|++||+||+++.|+|.+||||+||++++ +++|||
T Consensus 229 -----------g~~~~~i~Ar~l~~~I~~~a~~~GePgi~f~D~iN~~n~~~~~g~I~~tNpCgEq~L~p----~~~CnL 293 (752)
T PRK08665 229 -----------GEVVGRLNAREVFDLIVEMAWENGEPGIVFIDRINRDNPTPHLGEIESTNPCGEQPLLP----YESCNL 293 (752)
T ss_pred -----------ceeEEEEEHHHHHHHHHHHHHHhCCCeEEEHHHHhhcCCCCcCCcEEEeccccccccCC----CCceec
Confidence 45779999999999999999999999999999999999999999999999999988763 459999
Q ss_pred cccccchhcccCCCCCCCCCccccccCCCCCccCCHHHHHHHHHHHHHHHHHHHhcCCCcHHHHHHHhhccCCeeeecch
Q 003561 447 ASIALPRFVREKDVPVESHPSRIVGSRGSKNRFFDFEKLAEVTAIVTENLNKIIDVNYYPVETARRSNLRHRPIGIGVQG 526 (811)
Q Consensus 447 ~SInL~~~v~~~~~~~~~~~~~~~g~~~~~~~~fD~~~L~~~v~~avr~LD~vId~~~~p~~~~~~~~~~~R~iGlGv~G 526 (811)
+||||++||++ ..|||++|+++|+++|||||+|||++.||+|++++.++++|+||||+||
T Consensus 294 gSiNL~~~v~~--------------------~~~D~~~l~~~v~~avr~LDnvId~~~~Pl~~~~~~~~~~R~IGLGv~G 353 (752)
T PRK08665 294 GSINLSKMVKN--------------------GDVDWEKLREVVHLAVRFLDNVIDANKYPLPQIEEMTKGNRKIGLGVMG 353 (752)
T ss_pred cceeHHHHhcc--------------------CCCCHHHHHHHHHHHHHHHHHHHhcCCCCcHHHHHHHHhcCccccchhh
Confidence 99999999964 2699999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHcCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCCCCCCccccCCCCccccccCCCCcccHHHHHHH
Q 003561 527 LADTFILLGMAFESPEAQQLNKDIFETIYYHALKTSSEIAAKEGPYETYHNSPVSKGILQPDMWNVIPSDRWDWGVLRDM 606 (811)
Q Consensus 527 lad~L~~~gi~y~S~ea~~l~~~i~e~i~~~a~~aS~eLAke~G~~~~f~~S~~~~G~l~~d~~~~~~~~~~dW~~Lr~~ 606 (811)
|||+|+++|++|+|+||++|+++||+.|+++|+++|++||+|+|+||.|++|+|.+|.+
T Consensus 354 lad~L~~lgi~Y~S~ea~~l~~~i~~~i~~~a~~aS~eLA~e~G~fp~f~~s~~~~~~~--------------------- 412 (752)
T PRK08665 354 WADMLIQLGIPYDSEEAVELAEKVMKFIQDEAHAASRELAEERGPFPNYEGSIYDKDGL--------------------- 412 (752)
T ss_pred HHHHHHHcCCCcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCccccCcchhccc---------------------
Confidence 99999999999999999999999999999999999999999999999999999976543
Q ss_pred HHhcCccccceeccCCCCccccccCCCccccccccceeEEEcccCc-eEEeChHHHHHHHHcCCCcHHHhhhhhccCCcc
Q 003561 607 ISKNGVRNSLLVAPMPTASTSQILGNNECFEPYTSNIYSRRVLSGE-FVVVNKHLLHDLTEMGIWSPTIKNKIIYDDGSV 685 (811)
Q Consensus 607 i~~~G~RNs~l~AiaPT~stS~i~g~s~gieP~~s~~y~r~~~~g~-~~~vn~~l~~~l~~~g~~~~~~~~~i~~~~Gsv 685 (811)
.|+|||++||||||||+|+|+|+|+||||+|+++|+|++..|+ +..+|++|.+.|+++|+|++++++.+ ..+|++
T Consensus 413 ---~~~RNs~~taiAPTgTiS~i~g~SsGIEP~fa~~y~R~v~~g~~~~~vn~~~~~~l~~~g~~~~~~~~~~-~~~gs~ 488 (752)
T PRK08665 413 ---GPMRNATVTTIAPTGTISIIAGCSSGIEPLFALSFTRNVMDGERLVEVNPVFEAAAKEEGFYSEELMEKI-AEKGSI 488 (752)
T ss_pred ---ccccccceeeeCCccHHHhhcCCCCccCccccceeEEEecCCceeEEecHHHHHHHHHcCCCcHHHHHHH-HhcCCc
Confidence 3799999999999999999999999999999999999998887 68899999999999999999999887 578999
Q ss_pred cccCCCchHHHhhhhhhccCChHHHHHHHHHhccccccccceeEeeCC-CCHHHHHHHHHHHHHcCCceEEEEecCcccc
Q 003561 686 QKIPEIPEELKMIYKTVWEIKQMTLVDMAVDRGCYIDQSQSLNIHMDQ-PNFKKVTSLHFRTWSRGLKTGMYYLRSRAAA 764 (811)
Q Consensus 686 ~~i~~~p~~~k~~f~ta~ei~~~~~i~~~a~~Q~~vDqs~S~~l~~~~-~~~~~l~~~~~~Awk~GlKt~~YY~r~~~~~ 764 (811)
|++|.+|++++.+|+|||||+|++||+|||++|||||||||+|||+++ .+.++|.++|++||++||||+|||.-..+..
T Consensus 489 ~~~~~lp~~~~~~f~tA~di~~~~~i~m~A~~Q~~vD~siSkTvn~p~~~t~~dv~~~y~~Aw~~GlKg~t~YR~gs~~~ 568 (752)
T PRK08665 489 QDIDEVPEDVRRVFVTAHDISPEWHVRMQAAFQKHTDNAVSKTVNFPNEATIEDVREVYRLAYELGCKGVTIYRDGSRDE 568 (752)
T ss_pred ccCCCCChHHHHhcCcHhhCCHHHHHHHHHHHccccchhccCceecCCCCCHHHHHHHHHHHHHhCCCEEEEECCCCccc
Confidence 999999999999999999999999999999999999999999999986 6899999999999999999999996544444
Q ss_pred cc
Q 003561 765 DA 766 (811)
Q Consensus 765 ~~ 766 (811)
+.
T Consensus 569 ~v 570 (752)
T PRK08665 569 QV 570 (752)
T ss_pred ce
Confidence 33
No 20
>PRK08115 ribonucleotide-diphosphate reductase subunit alpha; Validated
Probab=100.00 E-value=8.3e-142 Score=1247.00 Aligned_cols=566 Identities=26% Similarity=0.400 Sum_probs=511.7
Q ss_pred cccCC-HHHHHHHHHhHhccC------CHHHHHHHHHHHhcCcEecccccccccCCCCC-CCCccccccccCCCHHHHHH
Q 003561 162 KVVER-PQHMLMRVSIGIHKD------DIDSAIKTYHMMSQRWFTHASPTLFNAGTPRP-QLSSCFLVCMKDDSIEGIYE 233 (811)
Q Consensus 162 ~~~E~-pq~~~~RvA~~l~~~------~~~~~~~~y~~ls~~~~~~atP~l~naGt~~~-~lsSCfl~~~~~Ds~~~I~~ 233 (811)
+++|. |+++|.|||++||.. +.+++++||++|++++|+||||||+|||++++ ||+||||+++++||++||++
T Consensus 125 ~~~e~~~~~~~~RVA~~la~~E~~~~~~~~~~~~fY~~Ls~~~f~PatPtL~NAGt~~~~~lssCFVl~~~~DSlegI~d 204 (858)
T PRK08115 125 KPLEIFYEQIAKRNATGLAAVEKTEEKRKESFEKFYQELVNMNFVPAGRVLYGAGSKTDVTYFNCYVMPFVKDSREGISE 204 (858)
T ss_pred CcccCCHHHHHHHHHHHHHhhccCcchHHHHHHHHHHHHHcCCeecCChHhhcCCCCCCCceeeEEecCCCCCCHHHHHH
Confidence 46785 999999999999853 35678999999999999999999999999988 89999999877899999999
Q ss_pred HHHHHHHHHHhcCCcceeeceecCCCCcccCCCCccCCcccHHHHHHHHHHHHhhCCCccccceEeeccCCcccHHHHHH
Q 003561 234 TLKECAVISKSAGGIGVSVHNIRATGSYIRGTNGTSNGIVPMLRVFNDTARYVDQGGGKRKGAFAVYLEPWHADIFEFLN 313 (811)
Q Consensus 234 ~~~~~a~isk~ggGvG~~~s~iR~~Gs~I~g~~g~ssG~vp~lk~~~~~~~~v~QgG~~R~ga~~vyl~~wH~DI~~Fl~ 313 (811)
+++++|+|+|+|||||+|||+|||+|++|+|++|+|||+||||++||+++.+|+||| +||||+|+||++|||||++||+
T Consensus 205 ~~ke~a~i~k~GGGvG~nfS~LRp~Gs~I~g~~g~SSG~Vsfm~~fd~~~~~V~QGG-~RRGA~mv~L~~wHPDI~eFI~ 283 (858)
T PRK08115 205 HRKQVMEIMSRGGGVGTNGSTLRPRNTLARGVNGKSSGSVSWLDDIAKLTHLVEQGG-SRRGAQMIMLADWHPDILEFII 283 (858)
T ss_pred HHHHHHHHHhcCCeEEecccccCCCCCccCCCCCcCCCeecHHHHHHHHHHHHHhCC-CcccceEEEecCCcccHHHHHH
Confidence 999999999999999999999999999999999999999999999999999999999 8999999999999999999999
Q ss_pred hh-----------hcCCccccc----------------------------------------------------------
Q 003561 314 LK-----------KNHGKEEHR---------------------------------------------------------- 324 (811)
Q Consensus 314 ~K-----------~~~g~e~~r---------------------------------------------------------- 324 (811)
+| +|+|++..|
T Consensus 284 aK~~~~~~~~~l~~n~gde~~r~~a~ek~~~~~ls~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~lk~~~~~~~~~~ 363 (858)
T PRK08115 284 SKMQNPRILRYLLENTEDEQIKRLVKEKLKFTPLSEVEEAMYQAIVNYKNIEGQGGFDTKVIKEAENKLRTGGTYTVNNP 363 (858)
T ss_pred hccccchhhhhhhcccccHhhhhhhhhhhcccccchhhhhhhhhhhcccccccccccchhhhhhhhhhhccccccccccc
Confidence 77 455665322
Q ss_pred --ccccceecccCHHHHHHHHcCCceEEecCCCCC---cchhhhhhHHHHH--HHHHHhcC---ceeEEEeHHHHHHHHH
Q 003561 325 --ARDLFYALWVPDLFMERVQTNGQWSLFCPNEAS---GLADCWGAEFEKL--YTHYEREG---KAKKVVQAQNLWFEIL 394 (811)
Q Consensus 325 --~~~l~~sv~ipD~Fm~rv~~~~~W~Lf~P~~~~---~L~~~yg~eF~~~--Y~~~e~~~---~~~~~v~Ar~L~~~I~ 394 (811)
+.++|+||+|||+||++|++|++|+||+|+... .+.+.||++|.+. |++|+..+ ..+++|+||+||++|+
T Consensus 364 ~~l~n~NiSV~itD~FMeaVe~d~~w~L~~P~~~~~~~~~~~~Y~~~~~~~gd~~~~e~~g~~~~v~~~I~AReLw~~I~ 443 (858)
T PRK08115 364 EFLTGANISVCLTKEFMEAVENDEEYELRFPDVENYTEEEMEIYNEEWHEVGDVREWEKMGYPVRTYRKIKAKELWNLIN 443 (858)
T ss_pred cccccceeEEEECHHHHHHHHcCCCEEEECCcccccchhhHhhhccccccchhHHHHhhcccccceeEEEcHHHHHHHHH
Confidence 345899999999999999999999999997642 3566788888776 67787755 4679999999999999
Q ss_pred HHHHhhCCceeEehhhhhhhcCCCCCC-ceeeecCCccccccCCCCcceeEEecccccchhcccCCCCCCCCCccccccC
Q 003561 395 TSQIETGTPYMLFKDTCNRKSNQQNLG-TIKSSNLCTEIIEYTSPTETAVCNLASIALPRFVREKDVPVESHPSRIVGSR 473 (811)
Q Consensus 395 ~~~~etG~P~i~f~D~~Nr~~~~~~~g-~I~~sNlC~EI~~~~~~~e~~~CNL~SInL~~~v~~~~~~~~~~~~~~~g~~ 473 (811)
+++|+||+|||+|+|++|+++|+++.| +|.+||||+||++++ +++|||+||||++|+..
T Consensus 444 ~~a~etGePgI~F~D~iNr~nn~~~~g~~I~aTNPCgEqpL~p----~~sCNLgSINL~kfV~~---------------- 503 (858)
T PRK08115 444 ICATYSAEPGIFFIDNANEMTNAKAYGQKVVATNPCGEQPLAP----YSVCNLAAINLANMADK---------------- 503 (858)
T ss_pred HHHHHhCCCeEEEHHHhhhcCCccccCCeeeecCccccccCCC----CcccchHHHHHHHHhhc----------------
Confidence 999999999999999999999999888 799999999987753 68999999999999963
Q ss_pred CCCCccCCHHHHHHHHHHHHHHHHHHHhcCCCcHHHHHHHhhccCCeeeecchHHHHHHHcCCCCCCHHHHHHHHHHHHH
Q 003561 474 GSKNRFFDFEKLAEVTAIVTENLNKIIDVNYYPVETARRSNLRHRPIGIGVQGLADTFILLGMAFESPEAQQLNKDIFET 553 (811)
Q Consensus 474 ~~~~~~fD~~~L~~~v~~avr~LD~vId~~~~p~~~~~~~~~~~R~iGlGv~Glad~L~~~gi~y~S~ea~~l~~~i~e~ 553 (811)
.+..|||++|+++|+++|||||+|||.+.||+++++++++++|+||||+|||||+|+++|+||+|+||++|+++|||.
T Consensus 504 --~~~~fD~~~L~~~V~~avRfLDnVID~n~yPl~e~~~~~~~~R~IGLGvmGLAD~L~~lgIpYdSeEA~~l~~~I~e~ 581 (858)
T PRK08115 504 --ETKTVDYEKLKRTVEVGVRMQDNVIDATPYFLEENKKQALGERRVGLGVMGLHDLLIYCETVYGSEEGNQLVDQIFET 581 (858)
T ss_pred --cccccCHHHHHHHHHHHHHHHHHHHhcCCCcHHHHHHHhhhcCCeeechhhHHHHHHHcCCCCCCHHHHHHHHHHHHH
Confidence 123799999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHhCCCCCCCCCccccCCCCccccccCCCCcccHHHHHHHHHhcCccccceeccCCCCccccccCCC
Q 003561 554 IYYHALKTSSEIAAKEGPYETYHNSPVSKGILQPDMWNVIPSDRWDWGVLRDMISKNGVRNSLLVAPMPTASTSQILGNN 633 (811)
Q Consensus 554 i~~~a~~aS~eLAke~G~~~~f~~S~~~~G~l~~d~~~~~~~~~~dW~~Lr~~i~~~G~RNs~l~AiaPT~stS~i~g~s 633 (811)
|+++|++||++||+|+|+||.|++|+|++|.++.+.|....-....|+.|+++|++||+|||+++|||||||||+|+|+|
T Consensus 582 I~~~A~~AS~eLAkErG~FP~f~gs~~~~~~~~r~~~~~~~~~~~~~~~Lre~I~k~GiRNS~ltaIAPTGSiS~Iag~S 661 (858)
T PRK08115 582 IATTAYRTSIELAKEKGSFPFLVGQTEEETAKLREAFINTGYMKKMPEDIREDILKYGIRNSHLLTVAPTGSTGTMVGVS 661 (858)
T ss_pred HHHHHHHHHHHHHHHhCCCCcccCCchhhhhHHHhhhhhccccccCcHHHHHHHHHhCcchhceeeeCChHHHHHHhCCC
Confidence 99999999999999999999999999999876655443211113358999999999999999999999999999999999
Q ss_pred ccccccccceeEEEcccCceEEeChHHHHHHHHcCCCcHHHhhhhhccCCcccccCCCchHHHhhhhhhccCChHHHHHH
Q 003561 634 ECFEPYTSNIYSRRVLSGEFVVVNKHLLHDLTEMGIWSPTIKNKIIYDDGSVQKIPEIPEELKMIYKTVWEIKQMTLVDM 713 (811)
Q Consensus 634 ~gieP~~s~~y~r~~~~g~~~~vn~~l~~~l~~~g~~~~~~~~~i~~~~Gsv~~i~~~p~~~k~~f~ta~ei~~~~~i~~ 713 (811)
+||||+|+++|.|++..|+|+++|+++++++.+.+.| ..|++++.+|+|||||+|++||+|
T Consensus 662 sGIEPifs~~y~R~~~~G~f~~vn~~~~~~~l~~~~~-------------------~~~~~l~~~F~TA~eI~p~~hI~m 722 (858)
T PRK08115 662 TGLEPYFSFSYYRSGRLGKFIEVKADIVQEYLDKHPE-------------------ADENHLPEWFISAMELKPEAHADV 722 (858)
T ss_pred cccCcCeeeeEEEEeccCceEEEchHHHHHHHHhCCC-------------------CCchhHHHhcccHhhCCHHHHHHH
Confidence 9999999999999999999999999988776553321 135667779999999999999999
Q ss_pred HHHhccccccccceeEeeCC-CCHHHHHHHHHHHHHcCCceEEEEecCccccccccc
Q 003561 714 AVDRGCYIDQSQSLNIHMDQ-PNFKKVTSLHFRTWSRGLKTGMYYLRSRAAADAIKF 769 (811)
Q Consensus 714 ~a~~Q~~vDqs~S~~l~~~~-~~~~~l~~~~~~Awk~GlKt~~YY~r~~~~~~~~~~ 769 (811)
||++|||||||||+|||+|+ .+.++|.++|++||+.||||+|||++..+..+....
T Consensus 723 qAa~Qk~VDqsISkTInlP~~at~edV~~iY~~Awk~GlKGiTvYrdGSr~~qvL~~ 779 (858)
T PRK08115 723 QCIIQRWVDSSLSKTVNAPKGYTVEQVQKVYERLYRGGAKGGTVYVDGSRDAQVLTL 779 (858)
T ss_pred HHHHccccchhhcCcccCCCCCCHHHHHHHHHHHHHcCCCEEEEeCCCCccceeeee
Confidence 99999999999999999996 589999999999999999999999987777665433
No 21
>TIGR02504 NrdJ_Z ribonucleoside-diphosphate reductase, adenosylcobalamin-dependent. This model identifies genes in a wide range of deeply branching bacteria. All are structurally related to the class I (non-heme iron dependent) RNRs. In most species this gene is known as NrdJ, while in mycobacteria it is called NrdZ.
Probab=100.00 E-value=5.8e-140 Score=1227.29 Aligned_cols=564 Identities=32% Similarity=0.519 Sum_probs=531.4
Q ss_pred HHHhhccc-cCCcccCCHHHHHHHHHhHhccCCH--------HHHHHHHHHHhcCcEecccccccc-cCCCCCCCCcccc
Q 003561 151 LERSYLLK-VQGKVVERPQHMLMRVSIGIHKDDI--------DSAIKTYHMMSQRWFTHASPTLFN-AGTPRPQLSSCFL 220 (811)
Q Consensus 151 l~~~Yl~k-~~g~~~E~pq~~~~RvA~~l~~~~~--------~~~~~~y~~ls~~~~~~atP~l~n-aGt~~~~lsSCfl 220 (811)
|.++|++| .+|.++|+||++|+|||++++..+. +++++||++|++++|+|+||+|+| +|++++|++||||
T Consensus 2 l~~rY~~k~~~g~~~E~~~~~~~RvA~~la~~~~~~~~~~~~~~~~~fy~~l~~~~~~patp~l~n~~g~~~~~lssCfv 81 (586)
T TIGR02504 2 LAARYLLKDEDGGIIESPEDLFRRVARALAAAEDKYNSPVWKQWYERFYDLMVNLGFMPNSPTLMNAGGTRLGQLSACFV 81 (586)
T ss_pred hhhhhceecCCCCccCCHHHHHHHHHHHHHhhhcccccchhHHHHHHHHHHHHcCeEEccchhhhcccCCCCCcceeeEC
Confidence 67899999 5688899999999999999986432 578999999999999999999999 8999999999999
Q ss_pred ccccCCCHHHHHHHHHHHHHHHHhcCCcceeeceecCCCCcccCCCCccCCcccHHHHHHHHHHHHhhCCCccccceEee
Q 003561 221 VCMKDDSIEGIYETLKECAVISKSAGGIGVSVHNIRATGSYIRGTNGTSNGIVPMLRVFNDTARYVDQGGGKRKGAFAVY 300 (811)
Q Consensus 221 ~~~~~Ds~~~I~~~~~~~a~isk~ggGvG~~~s~iR~~Gs~I~g~~g~ssG~vp~lk~~~~~~~~v~QgG~~R~ga~~vy 300 (811)
+++ +||+++|+++++++++++|.|||||+|+|.|||+|++|+|++|.||||||||++||+++.+|+||| +||||+|+|
T Consensus 82 ~~v-~Ds~~~I~~~~~~~a~i~k~GGGvG~~~s~iRp~G~~i~g~~g~ssG~v~~~~~~d~~~~~v~qgG-~RrgA~~~~ 159 (586)
T TIGR02504 82 LPV-EDDMESIFEAAKEAALIFKRGGGVGYNFSTLRPKGAKVSGTGGVASGPVSFMRVFDAAAGVIKQGG-TRRGAQMGI 159 (586)
T ss_pred CCC-CCCHHHHHHHHHHHHHHHhcCCceeecccccCCCCCccCCCCCCCCCchhHHHHHHHHHHHHHcCC-cccCceEEE
Confidence 987 899999999999999999999999999999999999999999999999999999999999999998 899999999
Q ss_pred ccCCcccHHHHHHhhhcCCcccccccccceecccCHHHHHHHHcCCceEEecCCCCCcchhhhhhHHHHHHHHHHhcCce
Q 003561 301 LEPWHADIFEFLNLKKNHGKEEHRARDLFYALWVPDLFMERVQTNGQWSLFCPNEASGLADCWGAEFEKLYTHYEREGKA 380 (811)
Q Consensus 301 l~~wH~DI~~Fl~~K~~~g~e~~r~~~l~~sv~ipD~Fm~rv~~~~~W~Lf~P~~~~~L~~~yg~eF~~~Y~~~e~~~~~ 380 (811)
|++|||||++||++|++.|+ .+++|+||+|||+|||+|++|++|+||+|.+++.+.+.|| ++..+..
T Consensus 160 l~~~HpDi~~Fi~~K~~~~~----~~~~n~sv~i~D~Fm~~v~~d~~w~L~~p~~~~~~~~~y~---------~~~~~~~ 226 (586)
T TIGR02504 160 LDVWHPDIEEFIEAKKKEGK----LTNFNISVGVTDAFMEAVEADEEYKLRNPRTGEEIEELAE---------LDPKNKV 226 (586)
T ss_pred EeCCCchHHHHHHhcccccc----hhcceehcccCHHHHHHHHcCCCeEEECCCcccccccccc---------cccccce
Confidence 99999999999999998765 5799999999999999999999999999999999999998 2445667
Q ss_pred eEEEeHHHHHHHHHHHHHhhCCceeEehhhhhhhcCCCCCCceeeecCCccccccCCCCcceeEEecccccchhcccCCC
Q 003561 381 KKVVQAQNLWFEILTSQIETGTPYMLFKDTCNRKSNQQNLGTIKSSNLCTEIIEYTSPTETAVCNLASIALPRFVREKDV 460 (811)
Q Consensus 381 ~~~v~Ar~L~~~I~~~~~etG~P~i~f~D~~Nr~~~~~~~g~I~~sNlC~EI~~~~~~~e~~~CNL~SInL~~~v~~~~~ 460 (811)
+++|+||+||++|++++|+||+|||+|+|++|+++|+++.|+|.+||||+||+|++ .++|||+||||++|+.+.
T Consensus 227 ~~~v~Arel~~~I~~~~~~tGePgi~f~D~~N~~~~~~~~~~i~~tNpC~Ei~l~~----~~~CnL~SiNL~~~v~~~-- 300 (586)
T TIGR02504 227 YKEVPARELWDKIVEAAWKSAEPGLLFIDTINKWHPCPYGGRINATNPCGEQPLLP----YESCNLGSINLAKFVKNG-- 300 (586)
T ss_pred eeEEEHHHHHHHHHHHHHHhCCCeEEEhhhhhhcCCCccCCceeeccCCccccccC----CcccchHHhhHHHHhhCC--
Confidence 89999999999999999999999999999999999999999999999999999974 359999999999999752
Q ss_pred CCCCCCccccccCCCCCccCCHHHHHHHHHHHHHHHHHHHhcCCCcHHHHHHHhhccCCeeeecchHHHHHHHcCCCCCC
Q 003561 461 PVESHPSRIVGSRGSKNRFFDFEKLAEVTAIVTENLNKIIDVNYYPVETARRSNLRHRPIGIGVQGLADTFILLGMAFES 540 (811)
Q Consensus 461 ~~~~~~~~~~g~~~~~~~~fD~~~L~~~v~~avr~LD~vId~~~~p~~~~~~~~~~~R~iGlGv~Glad~L~~~gi~y~S 540 (811)
...|||++|+++|+++||+||+|||++.||+|++++.++++|+||||+|||||+|+++|++|+|
T Consensus 301 ----------------~~~fD~~~l~~~v~~avr~LD~vid~~~~p~~~~~~~~~~~R~iGlGv~Glad~L~~lgi~y~S 364 (586)
T TIGR02504 301 ----------------FGSFDFERLREVVRLATRFLDNVIDLNRFPLPEIAEATKKTRRIGLGIMGLADLLIKLGIPYDS 364 (586)
T ss_pred ----------------CCccCHHHHHHHHHHHHHHHHHHHHhccCchHHHHHHHhcCCccccchhHHHHHHHHcCCCcCC
Confidence 1259999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCCCCCCccccCCCCccccccCCCCcccHHHHHHHHHhcCccccceecc
Q 003561 541 PEAQQLNKDIFETIYYHALKTSSEIAAKEGPYETYHNSPVSKGILQPDMWNVIPSDRWDWGVLRDMISKNGVRNSLLVAP 620 (811)
Q Consensus 541 ~ea~~l~~~i~e~i~~~a~~aS~eLAke~G~~~~f~~S~~~~G~l~~d~~~~~~~~~~dW~~Lr~~i~~~G~RNs~l~Ai 620 (811)
+||++++++|||.|+++|+++|++||+|+|+||.|++|+|++|.+++..+ ....|++|++.|++||+|||+++||
T Consensus 365 ~ea~~~~~~i~~~i~~~a~~aS~~LA~e~G~fp~f~~s~~~~g~~~~~~~-----~~~~~~~L~~~i~~~G~RNs~l~ai 439 (586)
T TIGR02504 365 EEARAFAEELMAFIADAAYRASAELAKERGPFPLFEASRYEMGRAMGARI-----PSALPAELREAIAKYGIRNAQLTTI 439 (586)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCCcccChhhccccccccc-----cccChHHHHHHHHHhCCCccceeee
Confidence 99999999999999999999999999999999999999999999873322 1236999999999999999999999
Q ss_pred CCCCccccccCCCccccccccceeEEEcccC-ceEEeChHHHHHHHHcCCCcHHHhhhhhccCCcccccCCCchHHHhhh
Q 003561 621 MPTASTSQILGNNECFEPYTSNIYSRRVLSG-EFVVVNKHLLHDLTEMGIWSPTIKNKIIYDDGSVQKIPEIPEELKMIY 699 (811)
Q Consensus 621 aPT~stS~i~g~s~gieP~~s~~y~r~~~~g-~~~~vn~~l~~~l~~~g~~~~~~~~~i~~~~Gsv~~i~~~p~~~k~~f 699 (811)
|||||+|+|+|+|+||||+|+++|.|++..| ++..+|++|.+.|++.|+++++++..+ ..+|+++++|. |++++.+|
T Consensus 440 aPTgtiS~i~g~S~gieP~~a~~y~r~~~~g~~~~~~n~~l~~~l~~~g~~~~~~~~~~-~~~gs~~~~~~-p~~~~~~f 517 (586)
T TIGR02504 440 APTGTISLIAGTSSGIEPVFALVYFRNVTVGGELLEVNPIVELALRELGYYSDQIVKYV-DEKGTVEGAPG-PEELPKVF 517 (586)
T ss_pred CCCchhhhhcCCCCccccchhhhhheeeccCCcEEEeCHHHHHHHHHcCCChHHHHHHH-HcCCCcccCCC-chhHHhhc
Confidence 9999999999999999999999999998887 999999999999999999999988865 57899999999 99999999
Q ss_pred hhhccCChHHHHHHHHHhccccccccceeEeeCC-CCHHHHHHHHHHHHHcCCceEEEEe
Q 003561 700 KTVWEIKQMTLVDMAVDRGCYIDQSQSLNIHMDQ-PNFKKVTSLHFRTWSRGLKTGMYYL 758 (811)
Q Consensus 700 ~ta~ei~~~~~i~~~a~~Q~~vDqs~S~~l~~~~-~~~~~l~~~~~~Awk~GlKt~~YY~ 758 (811)
+||+||+|++||+|+|++|||||||||+|+|+++ .+.++|.++|++||++||||++||.
T Consensus 518 ~tA~di~~~~~i~~~a~~Q~~vD~siS~ti~~~~~~~~~~v~~~y~~A~~~GlK~it~yR 577 (586)
T TIGR02504 518 VTANDVSPEDHVLMQAAIQPWVDSSISKTINMPSDATVEDVKAAYLLAWKLGLKGITVYR 577 (586)
T ss_pred cCcccCCHHHHHHHHHHHcCcccccccCeeecCCCCCHHHHHHHHHHHHHhCCCEEEEEe
Confidence 9999999999999999999999999999999996 5899999999999999999988873
No 22
>PRK06948 ribonucleotide reductase-like protein; Provisional
Probab=100.00 E-value=1.8e-136 Score=1190.51 Aligned_cols=564 Identities=23% Similarity=0.327 Sum_probs=498.1
Q ss_pred cccCCCChhhHHHHHHhhccccCCcccCCHHHHHHHHHhHhcc-----CCHHHHHHHHHHHhcCcEecccccccccCCCC
Q 003561 138 DRDFDYDYFGFKTLERSYLLKVQGKVVERPQHMLMRVSIGIHK-----DDIDSAIKTYHMMSQRWFTHASPTLFNAGTPR 212 (811)
Q Consensus 138 ~rd~~~~y~g~~~l~~~Yl~k~~g~~~E~pq~~~~RvA~~l~~-----~~~~~~~~~y~~ls~~~~~~atP~l~naGt~~ 212 (811)
-+++.++-.+.++|.+|||+| | .++||++|||||++++. .+.+++++||++|++++ +|+||||+|+|+++
T Consensus 7 ~~~~~~~~~~~~~l~~rYl~~--~--e~~p~~~~~RVA~~la~~e~~~~~~~~~~~fy~~ls~~~-~patp~l~NaG~~~ 81 (595)
T PRK06948 7 IGDMDEQPICDAVFADRYALP--G--ETSRAQVFARVARALALAEPPDTRAGAARRFYRNLLNGA-IGAGRIMANAGAAP 81 (595)
T ss_pred CCCCCCCHHHHHHHHHhcCCC--C--CCCHHHHHHHHHHHHhhhccccccHHHHHHHHHHHHcCC-cccChhhhcCCCCC
Confidence 456788889999999999997 3 13799999999999996 34678999999999965 79999999999998
Q ss_pred -CCCCccccccccCC-----CHHHHHHHHHHHHHHHHhcCCcceeeceecCCCCcccCCCCccCCcccHHHHHHHHHHHH
Q 003561 213 -PQLSSCFLVCMKDD-----SIEGIYETLKECAVISKSAGGIGVSVHNIRATGSYIRGTNGTSNGIVPMLRVFNDTARYV 286 (811)
Q Consensus 213 -~~lsSCfl~~~~~D-----s~~~I~~~~~~~a~isk~ggGvG~~~s~iR~~Gs~I~g~~g~ssG~vp~lk~~~~~~~~v 286 (811)
+||+||||+++.+| ++++|+++++++++++|.|||||+|||+|||+|++|+|++|.||||||||++||+++.+|
T Consensus 82 ~~~lssCfv~~v~d~~~~~~~~~~i~~~~~~~a~~~k~GGGvG~~~s~lR~~G~~i~~~~g~ssG~v~fm~~~d~~~~~v 161 (595)
T PRK06948 82 DQTMVNCFVHPIRAPAALTAVHPNLDRALDDARLTLLMGGGIGYDFSAIPPADARPDADHPDSPGVCAALDRFDRICAAL 161 (595)
T ss_pred CCceeeeEEcccccccccccchhhHHHHHHHHHHHHhhcCeeeecccccCCCCCcCCCCCCCCCChhhHHHHHHHHHHHH
Confidence 58999999987433 269999999999999999999999999999999999999999999999999999999999
Q ss_pred hhCCCccccceEeeccCCcccHHHHHHhhhcCCcccccccccceecccCHHHHHHHHcCCceEEecCCCCCcchhhhhhH
Q 003561 287 DQGGGKRKGAFAVYLEPWHADIFEFLNLKKNHGKEEHRARDLFYALWVPDLFMERVQTNGQWSLFCPNEASGLADCWGAE 366 (811)
Q Consensus 287 ~QgG~~R~ga~~vyl~~wH~DI~~Fl~~K~~~g~e~~r~~~l~~sv~ipD~Fm~rv~~~~~W~Lf~P~~~~~L~~~yg~e 366 (811)
+||| +||||+|+||++|||||++||++|+ ++.|++++|+||+|||+|||+|++|++|+||+|++. .+.+|++
T Consensus 162 ~Qgg-~RrGA~~~~L~~~HpDI~~Fi~~K~----~~~~~~~~n~sv~i~D~FM~~v~~d~~~~L~~p~~~---~~~~~~~ 233 (595)
T PRK06948 162 PFRD-GRRGAQMAVLRCDHPDLLAFVAAKR----GRARWTTFNLSVAVTDAFMQAVAQDLPWALRHRAPP---RRAAGGA 233 (595)
T ss_pred HhCC-CCccCeEEEEcCCCCCHHHHHHhcC----CccccccceeeEeECHHHHHHHHcCCCeEeeCCccc---ccccccc
Confidence 9998 8999999999999999999999998 346899999999999999999999999999999864 3345543
Q ss_pred HHHHHHHHHhcCc-eeEEEeHHHHHHHHHHHHHhhCCceeEehhhhhhhcCCCCCCceeeecCCccccccCCCCcceeEE
Q 003561 367 FEKLYTHYEREGK-AKKVVQAQNLWFEILTSQIETGTPYMLFKDTCNRKSNQQNLGTIKSSNLCTEIIEYTSPTETAVCN 445 (811)
Q Consensus 367 F~~~Y~~~e~~~~-~~~~v~Ar~L~~~I~~~~~etG~P~i~f~D~~Nr~~~~~~~g~I~~sNlC~EI~~~~~~~e~~~CN 445 (811)
+ ++++|. .+++|+||+||++|++++|+||+|||+|+|++|++||+++.|+|.+||||+||++++ +++||
T Consensus 234 ~------~~~~g~~~~~~v~Arel~~~I~~~~~~tGePgi~F~D~iN~~n~~~~~g~I~~tNpC~Ei~L~~----~~~CN 303 (595)
T PRK06948 234 L------RGADGAWTYATVPARHLWREIVSAARDSAEPGLLFVDTIDAANPLREHERIDATNPCGEQPLPP----YGSCV 303 (595)
T ss_pred c------hhccCcceeeEEcHHHHHHHHHHHHHHHCCCeEEeHhHHHhhCCCccCCcEEeecCCCCcccCC----CCcee
Confidence 3 234555 689999999999999999999999999999999999999999999999999998874 57999
Q ss_pred ecccccchhcccCCCCCCCCCccccccCCCCCccCCHHHHHHHHHHHHHHHHHHHhcCCCcHHHHHHHhhccCCeeeecc
Q 003561 446 LASIALPRFVREKDVPVESHPSRIVGSRGSKNRFFDFEKLAEVTAIVTENLNKIIDVNYYPVETARRSNLRHRPIGIGVQ 525 (811)
Q Consensus 446 L~SInL~~~v~~~~~~~~~~~~~~~g~~~~~~~~fD~~~L~~~v~~avr~LD~vId~~~~p~~~~~~~~~~~R~iGlGv~ 525 (811)
|+||||++||.++. ...+...|||++|+++|+++|||||+|||++.||+|++++.++++|+||||+|
T Consensus 304 LgSINL~~~v~~~~-------------~~~~~~~~D~~~l~~~v~~avR~LDnvid~~~~p~~~~~~~~~~~R~IGLGvm 370 (595)
T PRK06948 304 LGPIDLSRFVRHPF-------------GVGGEPRFDFAALATAVRIQVRMLDNALDLTRWPLAAHAREARQKRRIGVGVT 370 (595)
T ss_pred ccceeHHHHhcccc-------------ccccccccCHHHHHHHHHHHHHHHHHHhcccCCCcHHHHHHhhcCCCceecHH
Confidence 99999999987420 00122469999999999999999999999999999999999999999999999
Q ss_pred hHHHHHHHcCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCCCCCCccccCCCCccccccCCCCcccHHHHHH
Q 003561 526 GLADTFILLGMAFESPEAQQLNKDIFETIYYHALKTSSEIAAKEGPYETYHNSPVSKGILQPDMWNVIPSDRWDWGVLRD 605 (811)
Q Consensus 526 Glad~L~~~gi~y~S~ea~~l~~~i~e~i~~~a~~aS~eLAke~G~~~~f~~S~~~~G~l~~d~~~~~~~~~~dW~~Lr~ 605 (811)
||||+|+++|++|+|+||++|+++|||+|+++|+++|++||+|+|+||.|++|+|.+|.+.. ...|++|++
T Consensus 371 Glad~L~~lgi~Y~S~ea~~~~~~i~~~i~~~A~~aS~eLA~ErG~fp~f~~s~~~~~~~~~---------~~~~~~l~~ 441 (595)
T PRK06948 371 GLADALTMMRLRYDSPAAREMARYIASDLRHHAYAASAALAAERGAYPLCDPAAHLDALRAG---------PPLPHAVCH 441 (595)
T ss_pred HHHHHHHHcCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCCCCcChhhcccccc---------ccCcHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999987531 124899999
Q ss_pred HHHhcCccccceeccCCCCcccccc--CCCccccccccceeEEEcccCceEEeChHHHHHHHHcCCCcHHHhhhhhccCC
Q 003561 606 MISKNGVRNSLLVAPMPTASTSQIL--GNNECFEPYTSNIYSRRVLSGEFVVVNKHLLHDLTEMGIWSPTIKNKIIYDDG 683 (811)
Q Consensus 606 ~i~~~G~RNs~l~AiaPT~stS~i~--g~s~gieP~~s~~y~r~~~~g~~~~vn~~l~~~l~~~g~~~~~~~~~i~~~~G 683 (811)
+|++||+|||++||||||||||+|+ |+|+||||+|+++|+|++..|++... +++.+.....
T Consensus 442 ~i~~~G~RNs~ltaIAPTgSiS~i~~~~~S~GieP~fa~~y~R~~~~g~~~~~-----------~~~~~~~~~~------ 504 (595)
T PRK06948 442 AIARHGLRNSHLLSFAPVGSVSLAFGDNCSPGIEPARAWIEHRPVRAGAGGAR-----------GMRAENHAYR------ 504 (595)
T ss_pred HHHHhCcchhheeeeCCcHHHHHHhcCCCCCCcccceeeeEEEEeccCCCccc-----------ceeeechhhh------
Confidence 9999999999999999999999997 58999999999999999988875421 1111111111
Q ss_pred cccccCCCchHHHhhhhhhccCChHHHHHHHHHhccccccccceeEeeCC-CCHHHHHHHHHHHHHcCCceEEEEecCcc
Q 003561 684 SVQKIPEIPEELKMIYKTVWEIKQMTLVDMAVDRGCYIDQSQSLNIHMDQ-PNFKKVTSLHFRTWSRGLKTGMYYLRSRA 762 (811)
Q Consensus 684 sv~~i~~~p~~~k~~f~ta~ei~~~~~i~~~a~~Q~~vDqs~S~~l~~~~-~~~~~l~~~~~~Awk~GlKt~~YY~r~~~ 762 (811)
.++.++..|++++++|+||+||+|++||+|||++|||||||||+|||+++ .+.++|.++|++||++|||| +||+|...
T Consensus 505 ~~~~~~~~~~~~~~~f~tA~di~~~~~i~~~A~~Qk~vDqsiS~Tvn~~~~~t~~dv~~~y~~Aw~~GlKg-it~~R~~~ 583 (595)
T PRK06948 505 LFRSLRGERAALPDYFVTAADVAPADHLAMRAALQPYVDAGISKTVTLPNHYSLAEVDALLFQAWRAGLKG-ITIFRPDP 583 (595)
T ss_pred hccccCCCchhHHhhcCcHhhCCHHHHHHHHHHHcccchhhccCeEeeCCCCCHHHHHHHHHHHHHcCCCE-EEEEeCCc
Confidence 11234445677888999999999999999999999999999999999996 58999999999999999999 55567644
Q ss_pred cc
Q 003561 763 AA 764 (811)
Q Consensus 763 ~~ 764 (811)
..
T Consensus 584 ~~ 585 (595)
T PRK06948 584 AL 585 (595)
T ss_pred cc
Confidence 43
No 23
>TIGR02510 NrdE-prime ribonucleoside-diphosphate reductase, alpha chain. This model represents a small clade of ribonucleoside-diphosphate reductase, alpha chains which are sufficiently divergent from the usual Class I RNR alpha chains (NrdE or NrdA, TIGR02506) as to warrant their own model. The genes from Thermus thermophilus, Dichelobacter and Salinibacter are adjacent to the usual RNR beta chain.
Probab=100.00 E-value=5e-136 Score=1178.91 Aligned_cols=525 Identities=28% Similarity=0.408 Sum_probs=489.1
Q ss_pred ccccCCCChhhHHHHHHhhccccCCcccCCHHHHHHHHHhHhccC--CHHHHHHHHHHHhcCcEecccccccccCCCCCC
Q 003561 137 YDRDFDYDYFGFKTLERSYLLKVQGKVVERPQHMLMRVSIGIHKD--DIDSAIKTYHMMSQRWFTHASPTLFNAGTPRPQ 214 (811)
Q Consensus 137 ~~rd~~~~y~g~~~l~~~Yl~k~~g~~~E~pq~~~~RvA~~l~~~--~~~~~~~~y~~ls~~~~~~atP~l~naGt~~~~ 214 (811)
+++++-|+|+|+++|.++|++| | |+||++|||||++++.. +.+++++||++|++++|+||||||+|+|+++++
T Consensus 12 ~~~~~~~~~~~~~~l~~rYl~~--~---es~~~~~~RVA~~la~~~~~~~~~~~fy~~Ls~~~f~patP~l~NaGt~~~~ 86 (571)
T TIGR02510 12 GEIPEFANAHGRLMFKKGYLLK--G---ESVEEAFKEIAQRAAAHDIREEAEEKFFDLLARGKLALATPIFANTGLDRGL 86 (571)
T ss_pred ccchhhhhHHHHHHHHHhhcCC--C---CCHHHHHHHHHHHHhccccchHHHHHHHHHHHcCCeecCChhhhcCCCCCCC
Confidence 4566778999999999999997 2 89999999999999973 467889999999999999999999999999999
Q ss_pred CCccccccccCCCHHHHHHHHHHHHHHHHhcCCcceeeceecCCCCcccCCCCccCCcccHHHHHHHHHHHHh--hCCCc
Q 003561 215 LSSCFLVCMKDDSIEGIYETLKECAVISKSAGGIGVSVHNIRATGSYIRGTNGTSNGIVPMLRVFNDTARYVD--QGGGK 292 (811)
Q Consensus 215 lsSCfl~~~~~Ds~~~I~~~~~~~a~isk~ggGvG~~~s~iR~~Gs~I~g~~g~ssG~vp~lk~~~~~~~~v~--QgG~~ 292 (811)
++||||+++ +||+++|+++++++++++|.|||||+|||+|||+|++|+ ++|+|+|++|||++||.++.+++ ||| +
T Consensus 87 lsSCFv~~v-~Dsl~~I~~~~~e~a~l~k~GGGiG~~~S~lR~~G~~I~-~~g~ssG~~~~m~~~d~~~~~i~~~qgg-~ 163 (571)
T TIGR02510 87 PISCAGSYV-EDDTADFLEAQAEVAMLAKNGFGTALYLGDIRPRGADIR-DNGEHNGADAFAPLFDNFIETFNKVAAA-G 163 (571)
T ss_pred eeeEEeCCC-CCCHHHHHHHHHHHHHHHhcCCeeeeeccccCCCCCccC-CCCCCCCcchHHHHHHHHHHHHHHhhCC-c
Confidence 999999986 899999999999999999999999999999999999998 57799999999999999999999 998 8
Q ss_pred cccceEeeccCCcccHHHHHHhhhcCCcccccccccceecccCHHHHHHHHcCCceEEecCCCCCcchhhhhhHHHHHHH
Q 003561 293 RKGAFAVYLEPWHADIFEFLNLKKNHGKEEHRARDLFYALWVPDLFMERVQTNGQWSLFCPNEASGLADCWGAEFEKLYT 372 (811)
Q Consensus 293 R~ga~~vyl~~wH~DI~~Fl~~K~~~g~e~~r~~~l~~sv~ipD~Fm~rv~~~~~W~Lf~P~~~~~L~~~yg~eF~~~Y~ 372 (811)
||||+|+||++|||||++||++|+++|. .+++|+||+++|.||++++++.
T Consensus 164 RrGA~~~~L~~~HpDI~eFi~~K~~~~~----~~~~~~~v~~~d~f~~~~~~~~-------------------------- 213 (571)
T TIGR02510 164 RRGECAAYLDFEHGDFEELLGIQLEHPA----SAHLFWGFEKEDRWLEELIAGD-------------------------- 213 (571)
T ss_pred CccceEEEEcCCcccHHHHHHhcccCCC----CCceeeeeccCHHHHHHHHhCC--------------------------
Confidence 9999999999999999999999988764 5899999999999999998641
Q ss_pred HHHhcCceeEEEeHHHHHHHHHHHHHhhCCceeEehhhhhhhcCC--CCCC-ceeeecCCccccccCCCCcceeEEeccc
Q 003561 373 HYEREGKAKKVVQAQNLWFEILTSQIETGTPYMLFKDTCNRKSNQ--QNLG-TIKSSNLCTEIIEYTSPTETAVCNLASI 449 (811)
Q Consensus 373 ~~e~~~~~~~~v~Ar~L~~~I~~~~~etG~P~i~f~D~~Nr~~~~--~~~g-~I~~sNlC~EI~~~~~~~e~~~CNL~SI 449 (811)
.+||+||++|++++|+||+||++|+|++|+++|+ ++.| +|++||||+||+|++.++++++|||+||
T Consensus 214 -----------~~ar~lw~~I~~~~~etG~P~l~f~D~~N~~~p~~~~~~G~~I~asNlC~Ei~l~~~~~~~~~CnLgSi 282 (571)
T TIGR02510 214 -----------GEKMARWAELLKMRAETGIGYLFFNDIANEKAPEAFKALGIPIRASNLCTEIALPSDDEESFTCCLSSL 282 (571)
T ss_pred -----------chHHHHHHHHHHHHHHhCCceEEEhHHhhhhCchhhhhcCCeEEecCCCcceeccCCCCceeeeecchh
Confidence 1368999999999999999999999999999986 6788 8999999999999999999999999999
Q ss_pred ccchhcccCCCCCCCCCccccccCCCCCccCCHHHHHHHHHHHHHHHHHHHh-----cCCCc---HHHHHHHhhccCCee
Q 003561 450 ALPRFVREKDVPVESHPSRIVGSRGSKNRFFDFEKLAEVTAIVTENLNKIID-----VNYYP---VETARRSNLRHRPIG 521 (811)
Q Consensus 450 nL~~~v~~~~~~~~~~~~~~~g~~~~~~~~fD~~~L~~~v~~avr~LD~vId-----~~~~p---~~~~~~~~~~~R~iG 521 (811)
||++|+.. ..+++|+++||+|||||| ++.+| +++++++++++|+||
T Consensus 283 NL~~~~~~--------------------------~~~~~v~~avr~LDnViD~~i~~~~~~p~~~~~~~~~~~~~~R~IG 336 (571)
T TIGR02510 283 NLLHWDEI--------------------------KDADAIETLVIFLDSVCDDFIAKAEEIPYDTLEKAIRFAEKARAIG 336 (571)
T ss_pred hHHHHhhc--------------------------ccccHHHHHHHHHHHHHHHhhhhcccCCchhHHHHHHHHHhcCCcc
Confidence 99998632 125899999999999999 45555 688888999999999
Q ss_pred eecchHHHHHHHcCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCCCCCCccccCCCCccccccCCCCcccHH
Q 003561 522 IGVQGLADTFILLGMAFESPEAQQLNKDIFETIYYHALKTSSEIAAKEGPYETYHNSPVSKGILQPDMWNVIPSDRWDWG 601 (811)
Q Consensus 522 lGv~Glad~L~~~gi~y~S~ea~~l~~~i~e~i~~~a~~aS~eLAke~G~~~~f~~S~~~~G~l~~d~~~~~~~~~~dW~ 601 (811)
||||||||+|+++||+|+|+||++|+++|||+|+++|++||++||+|+|+|+
T Consensus 337 LGvmGlad~L~~lgi~Y~S~ea~~~~~~i~e~i~~~A~~aS~eLA~ErG~~~---------------------------- 388 (571)
T TIGR02510 337 LGTLGFHSYLQMNDIAFESGAAFILNAEIFAEIKEAAEEASRELAEEHGEDE---------------------------- 388 (571)
T ss_pred cchhHHHHHHHHcCCCcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCcch----------------------------
Confidence 9999999999999999999999999999999999999999999999999963
Q ss_pred HHHHHHHhcCccccceeccCCCCccccccC-CCccccccccceeEEEcccCceEEeChHHHHHHHHcCCC---cHHHhhh
Q 003561 602 VLRDMISKNGVRNSLLVAPMPTASTSQILG-NNECFEPYTSNIYSRRVLSGEFVVVNKHLLHDLTEMGIW---SPTIKNK 677 (811)
Q Consensus 602 ~Lr~~i~~~G~RNs~l~AiaPT~stS~i~g-~s~gieP~~s~~y~r~~~~g~~~~vn~~l~~~l~~~g~~---~~~~~~~ 677 (811)
|++.++++|+|||+++|||||||||+|+| +|+||||+|+++|+|++.+|+|+++|++|.+.|+++|+| ++++++.
T Consensus 389 -l~~~~~~~G~RNs~l~aiAPTgSiS~i~g~~S~gIEP~fa~~y~r~~~~g~~~~vn~~l~~~l~~~g~~~~~~~~~~~~ 467 (571)
T TIGR02510 389 -LAEVCEGKEMRNATLIAIAPNKSSAFIAGGVSPGIEPLTCNSFIKDLNAADFPFKNPFLAEVLKDKGKDKEIEEKMEDI 467 (571)
T ss_pred -hHHHHHhcCceeceeeeeCCcchHHHHhCCCCCCcCcchhhhhhhhccCCceEEECHHHHHHHHhcCCccccHHHHHHH
Confidence 23446689999999999999999999996 999999999999999999999999999999999999999 7889999
Q ss_pred hhccCCcccccCCCchHHHhhhhhhccCChHHHHHHHHHhccccccccceeEeeCC--CCHHHHHHHHHHHHHcCCceEE
Q 003561 678 IIYDDGSVQKIPEIPEELKMIYKTVWEIKQMTLVDMAVDRGCYIDQSQSLNIHMDQ--PNFKKVTSLHFRTWSRGLKTGM 755 (811)
Q Consensus 678 i~~~~Gsv~~i~~~p~~~k~~f~ta~ei~~~~~i~~~a~~Q~~vDqs~S~~l~~~~--~~~~~l~~~~~~Awk~GlKt~~ 755 (811)
|..++|+||++|.+|++++.+|+|||||+|++||+|||++|||||||||+|+|+++ .+.+++..+|++|||+|||| +
T Consensus 468 i~~~~gsv~~~~~l~~~~~~~f~tA~ei~~~~~I~m~A~~Q~~IDqsiS~Nl~~~~~~~~~~d~~~~y~~Aw~~GlK~-~ 546 (571)
T TIGR02510 468 ALEHNGSVQHLDFLTDEEKAVFKTAAEIDQHAIINLAAARQKHIDQAQSINLFFHADEAEPRDANAHRAFADDPGLKA-L 546 (571)
T ss_pred HHHcCCCccccccCChHHHhHcCcHHhCCHHHHHHHHHHHccccccccCCccccCCCCCCHHHHHHHHHHHHHcCCCe-E
Confidence 99999999999999999999999999999999999999999999999999999975 57899999999999999999 9
Q ss_pred EEecCcccccc
Q 003561 756 YYLRSRAAADA 766 (811)
Q Consensus 756 YY~r~~~~~~~ 766 (811)
||||+++++.+
T Consensus 547 YY~rs~~~~~~ 557 (571)
T TIGR02510 547 YYLFSERGAKA 557 (571)
T ss_pred EeecchHHHHh
Confidence 99999887766
No 24
>PF02867 Ribonuc_red_lgC: Ribonucleotide reductase, barrel domain; InterPro: IPR000788 Ribonucleotide reductase (1.17.4.1 from EC) [, ] catalyzes the reductive synthesis of deoxyribonucleotides from their corresponding ribonucleotides. It provides the precursors necessary for DNA synthesis. RNRs divide into three classes on the basis of their metallocofactor usage. Class I RNRs, found in eukaryotes, bacteria, bacteriophage and viruses, use a diiron-tyrosyl radical, Class II RNRs, found in bacteria, bacteriophage, algae and archaea, use coenzyme B12 (adenosylcobalamin, AdoCbl). Class III RNRs, found in anaerobic bacteria and bacteriophage, use an FeS cluster and S-adenosylmethionine to generate a glycyl radical. Many organisms have more than one class of RNR present in their genomes. Ribonucleotide reductase is an oligomeric enzyme composed of a large subunit (700 to 1000 residues) and a small subunit (300 to 400 residues) - class II RNRs are less complex, using the small molecule B12 in place of the small chain []. The reduction of ribonucleotides to deoxyribonucleotides involves the transfer of free radicals, the function of each metallocofactor is to generate an active site thiyl radical. This thiyl radical then initiates the nucleotide reduction process by hydrogen atom abstraction from the ribonucleotide []. The radical-based reaction involves five cysteines: two of these are located at adjacent anti-parallel strands in a new type of ten-stranded alpha/beta-barrel; two others reside at the carboxyl end in a flexible arm; and the fifth, in a loop in the centre of the barrel, is positioned to initiate the radical reaction []. There are several regions of similarity in the sequence of the large chain of prokaryotes, eukaryotes and viruses spread across 3 domains: an N-terminal domain common to the mammalian and bacterial enzymes; a C-terminal domain common to the mammalian and viral ribonucleotide reductases; and a central domain common to all three [].; GO: 0004748 ribonucleoside-diphosphate reductase activity, 0006260 DNA replication, 0055114 oxidation-reduction process, 0005971 ribonucleoside-diphosphate reductase complex; PDB: 1DQ3_A 1XJN_A 1XJK_A 3O0O_B 1XJF_A 3O0Q_A 1XJJ_A 1XJG_A 1XJM_B 3O0N_B ....
Probab=100.00 E-value=1.7e-135 Score=1181.89 Aligned_cols=525 Identities=45% Similarity=0.756 Sum_probs=474.1
Q ss_pred CCccccccccCCCHHHHHHHHHHHHHHHHhcCCcceeeceecCCCCcccCCCCccCCcccHHHHHHHHHHHHhhCCCccc
Q 003561 215 LSSCFLVCMKDDSIEGIYETLKECAVISKSAGGIGVSVHNIRATGSYIRGTNGTSNGIVPMLRVFNDTARYVDQGGGKRK 294 (811)
Q Consensus 215 lsSCfl~~~~~Ds~~~I~~~~~~~a~isk~ggGvG~~~s~iR~~Gs~I~g~~g~ssG~vp~lk~~~~~~~~v~QgG~~R~ 294 (811)
|+||||+...+||+++|+++++++++++|.|||||+|+|.|||+|++|+|++|.|+|+||||++||+++.+++||| +||
T Consensus 1 LssCfl~~~~~Ds~~~I~~~~~~~~~~~~~ggGvG~~~s~lR~~G~~i~~~~~~ssG~v~~~~~~~~~~~~i~q~g-~Rr 79 (538)
T PF02867_consen 1 LSSCFLMISVEDSLESIFDTLKEAARLSKYGGGVGIDFSNLRPKGSPIRGTGGKSSGPVSFMKLFDSSARAINQGG-KRR 79 (538)
T ss_dssp S-SEEEEEESSSSHHHHHHHHHHHHHHHCTT-EEEEEGTTS--TTCBETTTSSBCCHHHHHHHHHHHHHHHSSSTT-SSS
T ss_pred CceeeccCCCCCCHHHHHHHHHHHHHHHHhCCCCCCcccccCCCCCcccccCCCCCCchhHHHHHHHHhhHhhhcc-ccc
Confidence 7999994434999999999999999999999999999999999999999999999999999999999999999998 899
Q ss_pred cceEeeccCCcccHHHHHHhhhcCCcccccccccceecccCHHHHHHHHcCCceEEecCCCCCcchhhhhhHHHHHHHHH
Q 003561 295 GAFAVYLEPWHADIFEFLNLKKNHGKEEHRARDLFYALWVPDLFMERVQTNGQWSLFCPNEASGLADCWGAEFEKLYTHY 374 (811)
Q Consensus 295 ga~~vyl~~wH~DI~~Fl~~K~~~g~e~~r~~~l~~sv~ipD~Fm~rv~~~~~W~Lf~P~~~~~L~~~yg~eF~~~Y~~~ 374 (811)
||.|+||++|||||++||++|+++|++++|++++|+||+|||+||++|++|++|+||+|+++|.|.+.||++|++.|+++
T Consensus 80 Ga~~~~l~~~HpDi~~fi~~k~~~~~~~~r~~~~n~sv~i~D~Fm~~v~~~~~w~L~~p~~~~~l~~~~g~~f~~~y~~~ 159 (538)
T PF02867_consen 80 GAQMVYLDIWHPDIEEFIDAKNNNGDEERRLRNLNISVNIPDEFMEAVENDEDWYLFDPRDAPELYDLYGEEFEKEYERY 159 (538)
T ss_dssp TEEEEEEETTBTTHHHHCTTTSSSSTCCG-STTEEEEEEE-HHHHHHHHTT-EEEEBCTTCSTTHHHHHHHHHHHHHHHH
T ss_pred cceeeeccCCHHHHHHHHHHhhcccchhhhhcccceeEEecHHHHHHhhcCCCCEEECCCcccchhhhhCCcHHHHHHHh
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HhcC-ceeEEEeHHHHHHHHHHHHHhhCCceeEehhhhhhhcCCCCCCceeeecCCccccccCCCCcceeEEecccccch
Q 003561 375 EREG-KAKKVVQAQNLWFEILTSQIETGTPYMLFKDTCNRKSNQQNLGTIKSSNLCTEIIEYTSPTETAVCNLASIALPR 453 (811)
Q Consensus 375 e~~~-~~~~~v~Ar~L~~~I~~~~~etG~P~i~f~D~~Nr~~~~~~~g~I~~sNlC~EI~~~~~~~e~~~CNL~SInL~~ 453 (811)
++++ ..+++|+||+||++|++++|+||+|||+|+|++||++|+++.|+|++||||+||+|+++++++++|||+||||++
T Consensus 160 ~~~~~~~~~~v~Ar~l~~~I~~~~~~tG~Pgi~f~D~~Nr~~~~~~~~~I~~sN~C~Ei~l~~~~~~~~~CnL~SiNL~~ 239 (538)
T PF02867_consen 160 ERNGKIRKKTVPARELWEKILESAWETGEPGIIFIDNVNRHNPLKHGGPIRASNPCGEIPLPTSPDPYASCNLGSINLAR 239 (538)
T ss_dssp HHTTTSEEEEEEHHHHHHHHHHHHHHHS-SEEEEHHHHHHTSTTGGTSTEEEE-TTSSSEEE-BTTBTEEEEEEEEEGGG
T ss_pred hcCCCceeccccHHHHHHHHHHHHhhhCCceehhhHHHHhcCcccCCCeEeecCCCcceeecccccccccceeeeechhh
Confidence 9876 588999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hcccCCCCCCCCCccccccCCCCCccCCHHHHHHHHHHHHHHHHHHHhcCCCcHHHHHHHhhccCCeeeecchHHHHHHH
Q 003561 454 FVREKDVPVESHPSRIVGSRGSKNRFFDFEKLAEVTAIVTENLNKIIDVNYYPVETARRSNLRHRPIGIGVQGLADTFIL 533 (811)
Q Consensus 454 ~v~~~~~~~~~~~~~~~g~~~~~~~~fD~~~L~~~v~~avr~LD~vId~~~~p~~~~~~~~~~~R~iGlGv~Glad~L~~ 533 (811)
|+.++ ...|||+.|+++|++++|+||+|||.+.||+|++++.++++|+||||+|||||+|++
T Consensus 240 ~~~~~------------------~~~~d~~~l~~~v~~avr~Ld~vid~~~~p~~~~~~~~~~~R~iGlGv~Gla~~L~~ 301 (538)
T PF02867_consen 240 FVEDP------------------FGRFDWEELREVVRLAVRFLDNVIDINDYPLPEARRANKRYRSIGLGVMGLADMLAK 301 (538)
T ss_dssp GCETT------------------SCEETHHHHHHHHHHHHHHHHHHHHHS--SSHHHHHHHHHH--EEEEEESHHHHHHH
T ss_pred hcccc------------------cccccHHHHhhHHHHHHHHHHHHHhhcCCCcHHHHHHHHhcCccccccccHHHHHHh
Confidence 99752 247999999999999999999999999999999999999999999999999999999
Q ss_pred cCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCCCCCCccccCCCCccccccCC-----------CCcccHHH
Q 003561 534 LGMAFESPEAQQLNKDIFETIYYHALKTSSEIAAKEGPYETYHNSPVSKGILQPDMWNVIP-----------SDRWDWGV 602 (811)
Q Consensus 534 ~gi~y~S~ea~~l~~~i~e~i~~~a~~aS~eLAke~G~~~~f~~S~~~~G~l~~d~~~~~~-----------~~~~dW~~ 602 (811)
+|++|+|+||++++++|||.|+|+|++||++||+|+|+||+|++|+|++|+++++.|.... ....+|++
T Consensus 302 ~gi~y~S~ea~~~~~~i~e~i~~~a~~aS~~LA~e~G~~~~f~~s~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~W~~ 381 (538)
T PF02867_consen 302 LGIPYDSEEARELADEIFEHIYYAAYRASVELAKERGPFPWFEKSKYARGELPFDRWDKLVDERSKVEKGLSIPTEDWDE 381 (538)
T ss_dssp TT--TTSHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-SSTTGGGSTGGGTCCHHHHTTCSCCGSSHHHCT---TTSHHHH
T ss_pred CCcCcCCchHHHHHHHHHHHHHHHHHHHHHHHhccCCcCCCCCCCchhcccchhhhhhhccccccccccccccchhhHHH
Confidence 9999999999999999999999999999999999999999999999999999999886431 12348999
Q ss_pred HHHHHHhcCccccceeccCCCCccccccCCCccccccccceeEEEcccCceEEeChHHHHHHHHcCCCcHHHhhhhhccC
Q 003561 603 LRDMISKNGVRNSLLVAPMPTASTSQILGNNECFEPYTSNIYSRRVLSGEFVVVNKHLLHDLTEMGIWSPTIKNKIIYDD 682 (811)
Q Consensus 603 Lr~~i~~~G~RNs~l~AiaPT~stS~i~g~s~gieP~~s~~y~r~~~~g~~~~vn~~l~~~l~~~g~~~~~~~~~i~~~~ 682 (811)
||++|++||+|||+++|||||+|||+|+|+|+||||+|+++|.|++..|++..+|+++.+.|+++|+|+++++++|..++
T Consensus 382 Lr~~i~~~G~RNs~~~aiAPTgs~S~i~g~S~gIeP~~~~~~~r~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~i~~~~ 461 (538)
T PF02867_consen 382 LREDIKKYGLRNSQLTAIAPTGSISLIAGTSSGIEPIFANVYTRRSLSGEFPVVNPYLLRDLKELGIWDEELIEEILRHQ 461 (538)
T ss_dssp HHHHHHHH--SSSS-BBBS--TTHHHHHTS-STTS--SSSEEEEEETTSCEEEE-HHHHHHHHHTTHHSHHHHHHHHHTT
T ss_pred HHHHHhhhcCCcceeecCCCCCCeEeecCcCceeccchhhhhhhhhhcCCCcccChHHHHHHHHhCCcHHHHHHHHHhhh
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CcccccCCCchHHHhhhhhhccCChHHHHHHHHHhccccccccceeEeeCC-CCHHHHHHHHHHHHHcCCceEEEEe
Q 003561 683 GSVQKIPEIPEELKMIYKTVWEIKQMTLVDMAVDRGCYIDQSQSLNIHMDQ-PNFKKVTSLHFRTWSRGLKTGMYYL 758 (811)
Q Consensus 683 Gsv~~i~~~p~~~k~~f~ta~ei~~~~~i~~~a~~Q~~vDqs~S~~l~~~~-~~~~~l~~~~~~Awk~GlKt~~YY~ 758 (811)
|++++++.+|++.+.+|+|||||+|+++|+|||++|||||||||+|+|+++ .+.++|..+|++||++||||+|||+
T Consensus 462 gsv~~~~~~~~~~~~~f~tA~ei~~~~~i~~~a~~Q~~vDqsiS~t~~~p~~~~~~~v~~~~~~A~~~GlK~~tyY~ 538 (538)
T PF02867_consen 462 GSVQGLPELPDELKDVFKTAFEIDPEDHIRMQAARQKFVDQSISKTLNLPSDATVEDVAELYLYAWKLGLKGITYYR 538 (538)
T ss_dssp TCCTT-TTS-HHHHHHT--GGGSCHHHHHHHHHHHHTTSSS-B-BEEEEGTTEEHHHHHHHHHHHHHTT-SEEECEE
T ss_pred ccccccccCCcchhhhcccHHhCCHHHHHHHHHHhhccCccCcCceeeecCCCCHHHHHHHHHHHHHhCCCeeEEeC
Confidence 999999999999999999999999999999999999999999999999985 6889999999999999999999995
No 25
>PRK06556 vitamin B12-dependent ribonucleotide reductase; Validated
Probab=100.00 E-value=6.4e-134 Score=1199.74 Aligned_cols=586 Identities=23% Similarity=0.387 Sum_probs=523.5
Q ss_pred cccCCC----ChhhHHHHHHhhccccCCcc--cCCHHHHHHHHHhHhccCC--------H----HHHHHHHHHHhcCcEe
Q 003561 138 DRDFDY----DYFGFKTLERSYLLKVQGKV--VERPQHMLMRVSIGIHKDD--------I----DSAIKTYHMMSQRWFT 199 (811)
Q Consensus 138 ~rd~~~----~y~g~~~l~~~Yl~k~~g~~--~E~pq~~~~RvA~~l~~~~--------~----~~~~~~y~~ls~~~~~ 199 (811)
-+|..| +-.+..+|.+||+.+..|.+ .|+|.++|.|||.+++... . .+..+||++|++++|+
T Consensus 53 ~~~~e~p~~~s~~a~~vl~~rY~~~~~g~~~~e~S~~q~f~RVA~~~a~~~~~~~~~~~~~~~~~f~~ef~~~L~~~~f~ 132 (953)
T PRK06556 53 QRDVEFPKFWSVNATNIVASKYFRGAVGTPERENSLKQLIDRVVKTYTDAGREHGYFATEEDAEIFEHELTWLLLHQKFS 132 (953)
T ss_pred ccCCcCCccccHHHHHHHHhhhhccCCCCCcccCCHHHHHHHHHHHHHHHHhhcccccChhHHHHHHHHHHHHHHcCcEe
Confidence 455544 56778899999998855765 3699999999999987411 1 1345789999999999
Q ss_pred cccccccccCCC-CCCCCccccccccCCCHHHHHHHHHHHHHHHHhcCCcceeeceecCCCCcccCCCCccCCcccHHHH
Q 003561 200 HASPTLFNAGTP-RPQLSSCFLVCMKDDSIEGIYETLKECAVISKSAGGIGVSVHNIRATGSYIRGTNGTSNGIVPMLRV 278 (811)
Q Consensus 200 ~atP~l~naGt~-~~~lsSCfl~~~~~Ds~~~I~~~~~~~a~isk~ggGvG~~~s~iR~~Gs~I~g~~g~ssG~vp~lk~ 278 (811)
|+||+|+|+|++ ++|++||||+++ +||+++|+++++++++|+|+|||||+|||+|||+|++| +++|+|||||||||+
T Consensus 133 pnSP~l~NaG~~~~~qlssCFvl~v-~Dsle~I~~~~~~~a~i~K~GGGvG~nfS~LRp~G~~i-s~gG~sSGpvsFmki 210 (953)
T PRK06556 133 FNSPVWFNVGTESPQQVSACFILSV-DDSMESILNWYKEEGMLFKGGSGTGTNLSRIRSSKELL-SGGGTASGPVSFMRG 210 (953)
T ss_pred cCChHhhcCCCCCCCceeeEEeCCC-CCCHHHHHHHHHHHHHHHhcCCcEEEeccccCCCCCcC-CCCCCCCChhhHHHH
Confidence 999999999997 569999999987 89999999999999999999999999999999999999 779999999999999
Q ss_pred HHHHHHHHhhCCCccccceEeeccCCcccHHHHHHhhhcCCcc-------------------cccccccceecccCHHHH
Q 003561 279 FNDTARYVDQGGGKRKGAFAVYLEPWHADIFEFLNLKKNHGKE-------------------EHRARDLFYALWVPDLFM 339 (811)
Q Consensus 279 ~~~~~~~v~QgG~~R~ga~~vyl~~wH~DI~~Fl~~K~~~g~e-------------------~~r~~~l~~sv~ipD~Fm 339 (811)
||+++.+|+|||.+||||.|+||++|||||++||++|...... ..+..++|+||+|||+||
T Consensus 211 ~D~~~~~ikqGG~tRRGA~mv~L~vdHPDI~eFI~~K~~e~~k~~~l~~~~~~~d~~~~~~~~v~~~n~N~SV~vtD~FM 290 (953)
T PRK06556 211 ADASAGTIKSGGATRRAAKMVILDVDHPDIEEFIETKAKEEDKIRALRDAGYDMDLGGEAYSSVQYQNANNSVRVSDEFM 290 (953)
T ss_pred HHHHHHHHHcCCCccCcceEEEecCCCccHHHHHHhcccchhhhhhhhhcccccccccccccccccccccceEEECHHHH
Confidence 9999999999985699999999999999999999999743210 013457799999999999
Q ss_pred HHHHcCCceEEecCCCCCcchhhhhhHHHHHHHHHHhcCceeEEEeHHHHHHHHHHHHHhhCCceeEehhhhhhhcCCCC
Q 003561 340 ERVQTNGQWSLFCPNEASGLADCWGAEFEKLYTHYEREGKAKKVVQAQNLWFEILTSQIETGTPYMLFKDTCNRKSNQQN 419 (811)
Q Consensus 340 ~rv~~~~~W~Lf~P~~~~~L~~~yg~eF~~~Y~~~e~~~~~~~~v~Ar~L~~~I~~~~~etG~P~i~f~D~~Nr~~~~~~ 419 (811)
++|++|++|.|++|. +|...++|+||+||++|++++|+||+|||+|+|++|++||+++
T Consensus 291 ~aV~~d~~~~L~~~~----------------------~g~v~~~v~AreLw~~I~~~aw~tGdPgi~F~D~iNr~~~~~~ 348 (953)
T PRK06556 291 RAVENDGEFGLRART----------------------DGEVIETVDAKELFRKIAEAAWECADPGIQYDDTINDWHTCPE 348 (953)
T ss_pred HHHHcCCCeEEeccc----------------------cCceeeeeeHHHHHHHHHHHHHHhCCCeEEechhhhhhCCCcc
Confidence 999999999999985 3567899999999999999999999999999999999999999
Q ss_pred CCceeeecCCccccccCCCCcceeEEecccccchhcccCCCCCCCCCccccccCCCCCccCCHHHHHHHHHHHHHHHHHH
Q 003561 420 LGTIKSSNLCTEIIEYTSPTETAVCNLASIALPRFVREKDVPVESHPSRIVGSRGSKNRFFDFEKLAEVTAIVTENLNKI 499 (811)
Q Consensus 420 ~g~I~~sNlC~EI~~~~~~~e~~~CNL~SInL~~~v~~~~~~~~~~~~~~~g~~~~~~~~fD~~~L~~~v~~avr~LD~v 499 (811)
.|+|.+||||+||+++.. .+|||+||||.+|+.++ ..|||+.|+++|+++||+||+|
T Consensus 349 ~g~I~aSNpC~E~~l~~~----~sCNLgSINL~~fv~~~-------------------~~fD~~~l~~aV~~avr~LD~v 405 (953)
T PRK06556 349 SGRINASNPCSEYMFLDN----SSCNLASLNLMKFLRDD-------------------GTFDVESFRHAVELVITAMEIS 405 (953)
T ss_pred cCceEeecCccccccCCc----ccccceeeEHHHhhccc-------------------CccCHHHHHHHHHHHHHHHHHH
Confidence 999999999999998742 38999999999999642 2699999999999999999999
Q ss_pred HhcCCCcHHHHHHHhhccCCeeeecchHHHHHHHcCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCCCCCCc
Q 003561 500 IDVNYYPVETARRSNLRHRPIGIGVQGLADTFILLGMAFESPEAQQLNKDIFETIYYHALKTSSEIAAKEGPYETYHNSP 579 (811)
Q Consensus 500 Id~~~~p~~~~~~~~~~~R~iGlGv~Glad~L~~~gi~y~S~ea~~l~~~i~e~i~~~a~~aS~eLAke~G~~~~f~~S~ 579 (811)
||.+.||+|++++.++++|+||||+|||||+|+++||+|+|+||++|+++||+.|+++|+++|++||+|+|+||.|++|+
T Consensus 406 Id~~~yP~~~i~~~~~~~R~IGLGvmGlad~L~~lGi~YdS~ea~~la~~I~~~m~~~A~~aS~eLA~e~G~Fp~f~~s~ 485 (953)
T PRK06556 406 ICFADFPTEKIARNTRAFRQLGLGYANLGALLMATGLPYDSDGGRALAAAITSLMTGEAYRRSAELAGVVGPFEGYARNA 485 (953)
T ss_pred HhhccCChHHHHHHHHhccchhhhhhHHHHHHHHcCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCCcccCh
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999998
Q ss_pred ccc-CCCCc--ccccc------CC-----CCcccHHHHHHHHHhcCccccceeccCCCCccccccCC-Ccccccccccee
Q 003561 580 VSK-GILQP--DMWNV------IP-----SDRWDWGVLRDMISKNGVRNSLLVAPMPTASTSQILGN-NECFEPYTSNIY 644 (811)
Q Consensus 580 ~~~-G~l~~--d~~~~------~~-----~~~~dW~~Lr~~i~~~G~RNs~l~AiaPT~stS~i~g~-s~gieP~~s~~y 644 (811)
|.. |.+.. +.|.. .+ ....+|++|++.+++||+|||+++|||||||||+|+|+ |+||||+|+++|
T Consensus 486 ~~~~~v~~~h~~~~~~~~~~~~~~~~l~~~~~~~W~~l~~~~~~~G~RNa~~taIAPTGTiS~i~g~~SsGIEP~fa~v~ 565 (953)
T PRK06556 486 EPHLRVMRKHAAANDAIRPLGEVDAALLEAAKEAWDDALELGEKNGYRNAQASVLAPTGTIGFMMDCDTTGIEPDFALVK 565 (953)
T ss_pred hhhhchhhhhhhhhhhhhhhccCchhhhhhhhhhHHHHHHHHHHhCcccccceeecCchHHHHhcCCCCCCcccceeeee
Confidence 754 33322 21111 11 12457999999999999999999999999999999998 999999999998
Q ss_pred EEE-cccCceEEeChHHHHHHHHcCCCcHHHhhhh--hccCCcccccCCCchHHHhhhhhhc-------cCChHHHHHHH
Q 003561 645 SRR-VLSGEFVVVNKHLLHDLTEMGIWSPTIKNKI--IYDDGSVQKIPEIPEELKMIYKTVW-------EIKQMTLVDMA 714 (811)
Q Consensus 645 ~r~-~~~g~~~~vn~~l~~~l~~~g~~~~~~~~~i--~~~~Gsv~~i~~~p~~~k~~f~ta~-------ei~~~~~i~~~ 714 (811)
.|+ +.+|+|.+||+++.+.|+++|++++++.+.+ +..+|+++++|.+|++.+.+|+||+ ||+|++||+|+
T Consensus 566 ~rk~~~~G~~~~vN~~~~~~L~~~G~~~~ei~~i~~~~~~~gsv~~~p~L~~e~~~vF~tA~~~~~g~rdI~p~~hI~m~ 645 (953)
T PRK06556 566 YKKLVGGGSMKIVNQTVPRALKKLGYSEEQIEAIVEYIAEHGHIEGAPGLKPEHYAVFDCAMKPASGERSISPMGHVRMM 645 (953)
T ss_pred eEEeccCceeEEecHHHHHHHHHcCCCHHHHHHHHHHHHhCCCeecCCCCChHHhhhceeccccCCCCCccCHHHHHHHH
Confidence 887 4578899999999999999999998765432 4578999999999999999999999 99999999999
Q ss_pred HHhccccccccceeEeeCC-CCHHHHHHHHHHHHHcCCceEEEEecCcccccccccc
Q 003561 715 VDRGCYIDQSQSLNIHMDQ-PNFKKVTSLHFRTWSRGLKTGMYYLRSRAAADAIKFT 770 (811)
Q Consensus 715 a~~Q~~vDqs~S~~l~~~~-~~~~~l~~~~~~Awk~GlKt~~YY~r~~~~~~~~~~~ 770 (811)
|++|||||||||+|||+|+ +++++|.++|++|||+||||++||....+..+.....
T Consensus 646 Aa~Q~fID~aiSkTvnlp~~at~edv~~~y~~Awk~GlKgit~YRdgsk~~qvL~~~ 702 (953)
T PRK06556 646 AAVQPFLSGAISKTVNMPEDATVEDIEEVYLEGWKLGLKALAIYRDNCKVGQPLNTS 702 (953)
T ss_pred HHHhhhcccccceEEEcCCCCCHHHHHHHHHHHHHhCCCeEEEEcCCCcccceeecc
Confidence 9999999999999999985 7899999999999999999999998777766665443
No 26
>cd01679 RNR_I Class I ribonucleotide reductase. Ribonucleotide reductase (RNR) catalyzes the reductive synthesis of deoxyribonucleotides from their corresponding ribonucleotides. It provides the precursors necessary for DNA synthesis. RNRs are separated into three classes based on their metallocofactor usage. Class I RNRs, found in eukaryotes, bacteria, and many viruses, use a diiron-tyrosyl radical. Class II RNRs, found in bacteria, bacteriophage, algae and archaea, use coenzyme B12 (adenosylcobalamin, AdoCbl). Class III RNRs, found in anaerobic bacteria, bacteriophages, and archaea, use an FeS cluster and S-adenosylmethionine to generate a glycyl radical. Many organisms have more than one class of RNR present in their genomes. All three RNRs have a ten-stranded alpha-beta barrel domain that is structurally similar to the domain of PFL (pyruvate formate lyase). Class I RNR is oxygen-dependent and can be subdivided into classes Ia (eukaryotes, prokaryotes, viruses and phages) and Ib (
Probab=100.00 E-value=2.6e-127 Score=1086.52 Aligned_cols=454 Identities=62% Similarity=1.001 Sum_probs=440.7
Q ss_pred HHHHHHHHHhHhccCCHHHHHHHHHHHhcCcEecccccccccCCCCCCCCccccccccCCCHHHHHHHHHHHHHHHHhcC
Q 003561 167 PQHMLMRVSIGIHKDDIDSAIKTYHMMSQRWFTHASPTLFNAGTPRPQLSSCFLVCMKDDSIEGIYETLKECAVISKSAG 246 (811)
Q Consensus 167 pq~~~~RvA~~l~~~~~~~~~~~y~~ls~~~~~~atP~l~naGt~~~~lsSCfl~~~~~Ds~~~I~~~~~~~a~isk~gg 246 (811)
||++|||||++++..+.+++++||++|++++|+||||+|+|+|++++||+||||+.+ +||+++|+++++++++++|.||
T Consensus 1 pq~~~~rvA~~la~~~~~~~~~fy~~l~~~~~~patp~l~naG~~~~~lssCfl~~v-~Ds~e~i~~~~~~~~~l~~~gg 79 (460)
T cd01679 1 PQDRLMRVALGLASGDLEWAKEFYDLLSKQRFTPATPTLFNAGTPRGQLSSCFLLTV-DDSLESIYDTIKECAQLSKIGG 79 (460)
T ss_pred ChHHHHHHHHHHhcCCHHHHHHHHHHHHcCCeecCCHHhhcCCCCCCCcccccCCCC-CCCHHHHHHHHHHHHHHhhcCC
Confidence 899999999999988999999999999999999999999999999999999999987 7999999999999999999999
Q ss_pred CcceeeceecCCCCcccCCCCccCCcccHHHHHHHHHHHHhhCCCccccceEeeccCCcccHHHHHHhhhcCCccccccc
Q 003561 247 GIGVSVHNIRATGSYIRGTNGTSNGIVPMLRVFNDTARYVDQGGGKRKGAFAVYLEPWHADIFEFLNLKKNHGKEEHRAR 326 (811)
Q Consensus 247 GvG~~~s~iR~~Gs~I~g~~g~ssG~vp~lk~~~~~~~~v~QgG~~R~ga~~vyl~~wH~DI~~Fl~~K~~~g~e~~r~~ 326 (811)
|||+|+|+|||+|++|+|++|.|+||+||+++||+++.+++||| +||||.|+||++|||||++||++|++.|+++.|++
T Consensus 80 GvG~~~s~iRp~G~~i~~~~g~ssG~v~~~~~~~~~~~~i~qgg-~RrgA~~~~l~~~HpDi~~Fi~~K~~~~~~~~r~~ 158 (460)
T cd01679 80 GIGLNLSNIRATGSPIRGTNGASNGVIPFLKLLNDTARYVDQGG-QRKGAGAVYLEIWHPDIEEFLDLKKNNGDERRRAR 158 (460)
T ss_pred EEEEeccccCCCCCcccCCCCCCCChhhHHHHHHHHHHHHHcCC-ccccceEEEEeCCCCcHHHHHHHhhccCchhhHhh
Confidence 99999999999999999999999999999999999999999998 89999999999999999999999999999999999
Q ss_pred ccceecccCHHHHHHHHcCCceEEecCCCCCcchhhhhhHHHHHHHHHHhcCceeEEEeHHHHHHHHHHHHHhhCCceeE
Q 003561 327 DLFYALWVPDLFMERVQTNGQWSLFCPNEASGLADCWGAEFEKLYTHYEREGKAKKVVQAQNLWFEILTSQIETGTPYML 406 (811)
Q Consensus 327 ~l~~sv~ipD~Fm~rv~~~~~W~Lf~P~~~~~L~~~yg~eF~~~Y~~~e~~~~~~~~v~Ar~L~~~I~~~~~etG~P~i~ 406 (811)
++|+||||||+||++|+ |+||++|++++|+||+|||+
T Consensus 159 ~~n~~v~i~D~Fm~~v~-------------------------------------------r~l~~~I~~~~~~tG~P~i~ 195 (460)
T cd01679 159 DLFYGVWIPDLFMERVE-------------------------------------------RDLWRKILESQFETGYPYIL 195 (460)
T ss_pred cCceeeeeCHHHHHHHH-------------------------------------------HHHHHHHHHHHHHhCCcHHH
Confidence 99999999999999997 89999999999999999999
Q ss_pred ehhhhhhhcCCCCCCceeeecCCccccccCC-----CCcceeEEecccccchhcccCCCCCCCCCccccccCCCCCccCC
Q 003561 407 FKDTCNRKSNQQNLGTIKSSNLCTEIIEYTS-----PTETAVCNLASIALPRFVREKDVPVESHPSRIVGSRGSKNRFFD 481 (811)
Q Consensus 407 f~D~~Nr~~~~~~~g~I~~sNlC~EI~~~~~-----~~e~~~CNL~SInL~~~v~~~~~~~~~~~~~~~g~~~~~~~~fD 481 (811)
|+|++|+++|+++.|+|++||||+||+|++. ++++++|||+||||++|+.
T Consensus 196 f~D~~N~~~~~~~~~~I~~sNpC~Ei~l~~~~~~~~~~~~~~CnL~sinL~~~v~------------------------- 250 (460)
T cd01679 196 FKDTCNRKNPQKHLGTIKSSNLCTEILQPTSPSEDEPGEDAVCNLASINLGNFVT------------------------- 250 (460)
T ss_pred hhHHHHhcCCcccCCeEEeeccccccccCCccccccCCCcceeecHHhHHHHHhC-------------------------
Confidence 9999999999999999999999999999987 5788999999999999973
Q ss_pred HHHHHHHHHHHHHHHHHHHhcCCCcHHHHHHHhhccCCeeeecchHHHHHHHcCCCCCCHHHHHHHHHHHHHHHHHHHHH
Q 003561 482 FEKLAEVTAIVTENLNKIIDVNYYPVETARRSNLRHRPIGIGVQGLADTFILLGMAFESPEAQQLNKDIFETIYYHALKT 561 (811)
Q Consensus 482 ~~~L~~~v~~avr~LD~vId~~~~p~~~~~~~~~~~R~iGlGv~Glad~L~~~gi~y~S~ea~~l~~~i~e~i~~~a~~a 561 (811)
|++|+++|+++||+||+|||.+.||+|++++.++++|+||||+|||||+|+++|++|+|+||++++++|||.|+++|+++
T Consensus 251 ~~~l~~~v~~avr~lD~vid~~~~p~~~~~~~~~~~R~iGlGv~Glad~L~~~gi~y~s~ea~~~~~~i~e~i~~~a~~a 330 (460)
T cd01679 251 FEKLEEVVKLAVRALDNVIDLNYYPVPEAKRSNMRHRAIGLGVMGLHDYLALLRIPYESEEALDLNDRIFETINYYALKA 330 (460)
T ss_pred hHHHHHHHHHHHHHHHHHHhccCCCcHHHHHHHHhcCcccccchHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHHHH
Confidence 58899999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHhCCCCCCCCCccccCCCCccccccCCCCcccHHHHHHHHHhcCccccceeccCCCCccccccCCCcccccccc
Q 003561 562 SSEIAAKEGPYETYHNSPVSKGILQPDMWNVIPSDRWDWGVLRDMISKNGVRNSLLVAPMPTASTSQILGNNECFEPYTS 641 (811)
Q Consensus 562 S~eLAke~G~~~~f~~S~~~~G~l~~d~~~~~~~~~~dW~~Lr~~i~~~G~RNs~l~AiaPT~stS~i~g~s~gieP~~s 641 (811)
|++||+|+| |+|||+++|||||||+|+|+|+|+||||+|+
T Consensus 331 S~~LA~e~G----------------------------------------G~RNs~l~aiaPTgs~S~l~g~S~gieP~~a 370 (460)
T cd01679 331 SCELAKERG----------------------------------------GLRNSLLLAIAPTASISQILGATPSIEPITS 370 (460)
T ss_pred HHHHHHHhC----------------------------------------CccccceeeeCCccHHHHhcCCCCCcCcccc
Confidence 999999988 8899999999999999999999999999999
Q ss_pred ceeEEEcccCceEEeChHHHHHHHHcCCCcHHHhhhhhccCCcccccCCCchHHHhhhhhhccCChHHHHHHHHHhcccc
Q 003561 642 NIYSRRVLSGEFVVVNKHLLHDLTEMGIWSPTIKNKIIYDDGSVQKIPEIPEELKMIYKTVWEIKQMTLVDMAVDRGCYI 721 (811)
Q Consensus 642 ~~y~r~~~~g~~~~vn~~l~~~l~~~g~~~~~~~~~i~~~~Gsv~~i~~~p~~~k~~f~ta~ei~~~~~i~~~a~~Q~~v 721 (811)
++|.|++.+|+|.++|++|.+++.+.| +|+|||||+|+++|+|+|++||||
T Consensus 371 ~~~~R~~~~g~~~~~n~~l~~~~~~~g-----------------------------~f~ta~di~~~~~i~~~a~~Q~~v 421 (460)
T cd01679 371 NIYVRRVLSGEFPVVNPHLEKDLWEYG-----------------------------LYKTAYEIDQRWLIDLAADRQKHI 421 (460)
T ss_pred ceeEEEccCCcEEEECHHHHHHHHHcC-----------------------------ccccHHhCCHHHHHHHHHHHccCc
Confidence 999999999999999999988776533 799999999999999999999999
Q ss_pred ccccceeEeeCC-CCHHHHHHHHHHHHHcCCceEEEEecC
Q 003561 722 DQSQSLNIHMDQ-PNFKKVTSLHFRTWSRGLKTGMYYLRS 760 (811)
Q Consensus 722 Dqs~S~~l~~~~-~~~~~l~~~~~~Awk~GlKt~~YY~r~ 760 (811)
|||||+|+|+++ .+.++|.++|++|||+|||| +|||||
T Consensus 422 DqsiS~t~~~~~~~~~~~i~~~~~~a~~~GlK~-~YY~r~ 460 (460)
T cd01679 422 DQGQSLNLFLTPPATTRDLNSLYFYAWKKGLKT-LYYLRT 460 (460)
T ss_pred ccccCceeecCCCCCHHHHHHHHHHHHHcCCCe-EEEeCC
Confidence 999999999996 58999999999999999999 599996
No 27
>PRK08332 ribonucleotide-diphosphate reductase subunit alpha; Validated
Probab=100.00 E-value=4.5e-125 Score=1161.71 Aligned_cols=473 Identities=27% Similarity=0.441 Sum_probs=430.0
Q ss_pred eeeceecCCCCcccCCCCccCCcccHHHHHHHHHHHHhhCCCccccceEeeccCCcccHHHHHHhhhcC-Cccccccccc
Q 003561 250 VSVHNIRATGSYIRGTNGTSNGIVPMLRVFNDTARYVDQGGGKRKGAFAVYLEPWHADIFEFLNLKKNH-GKEEHRARDL 328 (811)
Q Consensus 250 ~~~s~iR~~Gs~I~g~~g~ssG~vp~lk~~~~~~~~v~QgG~~R~ga~~vyl~~wH~DI~~Fl~~K~~~-g~e~~r~~~l 328 (811)
+|||+|||+|++|+|++|.||||||||++||+++++|+||| +||||+|+||++|||||++||++|+.+ |+. +.+++
T Consensus 758 ~~fS~LRp~Gs~I~~t~g~asGpvsfm~lfd~~~~~v~QGG-~RRGA~m~yL~~~HPDI~eFI~aK~~~~g~~--~l~~f 834 (1740)
T PRK08332 758 LNFSKLRPEGDIVGTTTGAASGPVSFMHLIDAVSDVIKQGG-VRRGANMGILEIWHPDIEKFIHAKEKNIGTN--VLSNF 834 (1740)
T ss_pred ecccccCCCCCcccCCCCCCCChHHHHHHHHHHHHHHHhcC-CCcCCeEEEEcCCCccHHHHHHhhhccCCcc--hhccc
Confidence 89999999999999999999999999999999999999999 899999999999999999999999654 433 36788
Q ss_pred ceecccCHHHHHHHHcCCceEEecCCCCCcchhhhhhHHHHHHHHHHhcCceeEEEeHHHHHHHHHHHHHhhCCceeEeh
Q 003561 329 FYALWVPDLFMERVQTNGQWSLFCPNEASGLADCWGAEFEKLYTHYEREGKAKKVVQAQNLWFEILTSQIETGTPYMLFK 408 (811)
Q Consensus 329 ~~sv~ipD~Fm~rv~~~~~W~Lf~P~~~~~L~~~yg~eF~~~Y~~~e~~~~~~~~v~Ar~L~~~I~~~~~etG~P~i~f~ 408 (811)
|++|.|+|+||++|++|++|+||+|++ |...++|+||+||.+|++++|+||+|||+|+
T Consensus 835 Nlsv~v~D~FMeaV~~d~~w~L~~P~~----------------------g~~~~~v~AreLw~~I~~~a~etGePgilF~ 892 (1740)
T PRK08332 835 NISVGIWEDFWEALKEGKKYPLINPRT----------------------GEVVKEIDPKSLFEELAYMAWAKADPGVIFF 892 (1740)
T ss_pred cccccchHHHHHHHHcCCCeEeecCCC----------------------CceeeEEcHHHHHHHHHHHHHHhCCCcEEEh
Confidence 888888999999999999999999974 4567899999999999999999999999999
Q ss_pred hhhhhhcCCCC--CCceeeecCCcc----------------c-------------------------------ccc----
Q 003561 409 DTCNRKSNQQN--LGTIKSSNLCTE----------------I-------------------------------IEY---- 435 (811)
Q Consensus 409 D~~Nr~~~~~~--~g~I~~sNlC~E----------------I-------------------------------~~~---- 435 (811)
|++|+.||+++ .|+|.+||||.- . +.+
T Consensus 893 D~iN~~n~~~~~~~g~I~aSNpCVtgdt~v~T~~G~~~~~~l~~~~~~~g~~~~~~~~g~~~~g~~~~~~~e~v~~g~~~ 972 (1740)
T PRK08332 893 DVINRRNVLKEAKGGPIRATNPCVVGDTRILTPEGYIKAEELFSLAKERGKKEAVAVEGIAEEGEPYAYSVEILLPGEEE 972 (1740)
T ss_pred hhhhhhCCCccccCCeEEeecCCcCCCceeecccchHHHHHHHHHHHhcCcceeeeeccccccCCcccccceeecccccc
Confidence 99999999877 589999999951 0 000
Q ss_pred -------------------------------------------------------------------------------C
Q 003561 436 -------------------------------------------------------------------------------T 436 (811)
Q Consensus 436 -------------------------------------------------------------------------------~ 436 (811)
.
T Consensus 973 ~~~~~~~g~~~~~~~~~~~~~~~~~tG~k~v~rl~T~~G~~i~~T~dH~~lt~~gW~~~~eLk~GD~i~lp~~~~~~~~g 1052 (1740)
T PRK08332 973 VKYETVHGKALAIADPVAVPAYVWKVGKKKVARVRTKEGYEITATLDHKLMTPEGWKEVGDLKPGDKILLPRFEVEEDFG 1052 (1740)
T ss_pred ccccccCCcccccccccccccceeecCcceEEEEEecCCcEEEecCCceeeecccCEEHhHcCCCCEEEecCccCccccC
Confidence 0
Q ss_pred -----------------------C--------------------------------------------------------
Q 003561 437 -----------------------S-------------------------------------------------------- 437 (811)
Q Consensus 437 -----------------------~-------------------------------------------------------- 437 (811)
+
T Consensus 1053 ~~~~~e~~a~LLG~LiGDGsl~~~~k~~~~~~~~~~ee~va~~v~~~l~~~fG~~~~~~r~~~~~~i~~r~~~~~~Lk~l 1132 (1740)
T PRK08332 1053 SESIGEDLAFVLGWFIGDGYLNVNDKRAWFYFNAEKEEEIAWKIREILAKHFGIKAEPHRYGNQIKLGVRGEAYRWLESI 1132 (1740)
T ss_pred ccccchHHHHHHHHhhcCceeecCCceeEEEecCcchHHHHHHHHHHHHHHhCCcccccccccceeecccHHHHHHHHHh
Confidence 0
Q ss_pred --------C-----------------------------------------------------------------------
Q 003561 438 --------P----------------------------------------------------------------------- 438 (811)
Q Consensus 438 --------~----------------------------------------------------------------------- 438 (811)
|
T Consensus 1133 ~~~~eKrIPe~vfrl~~~~~~aFLrGLFDaDG~V~~~~~I~lsS~s~~Ll~dVq~LLlrLGI~S~I~~~~~~~~~~l~d~ 1212 (1740)
T PRK08332 1133 VKTNEKRVPEIVYRLKPREIAAFLRGLFSADGYVDNDMAIRLTSKSRELLRDVQDLLLLFGILSKIYERPYKSEFKYTTK 1212 (1740)
T ss_pred ccccccCCCHHHHhCCHHHHHHHHHHHcccCCccccCceEEEEeCCHHHHHHHHHHHHhCCCeeEEEeccccccccccCC
Confidence 0
Q ss_pred --------------------------------------------------------------------------------
Q 003561 439 -------------------------------------------------------------------------------- 438 (811)
Q Consensus 439 -------------------------------------------------------------------------------- 438 (811)
T Consensus 1213 ~gg~k~y~~~~~y~LiIsg~~~~~F~e~IGF~~~K~~rl~l~~~~~~~~~~~V~~ve~~G~E~VYd~t~p~~h~f~~nG~ 1292 (1740)
T PRK08332 1213 DGEERTYRAEGYYELVIANYSRKLFAEKIGFEGYKMEKLSLQKTKIDEPIVTVESVEVLGEEIVYDFTVPEHHSYISNGF 1292 (1740)
T ss_pred CCcccccccCceEEEEEcchHHHHHHHHhccchhhHHHHhhcccccccceeEEEEeeecCccceeecCCCccccccccce
Confidence
Q ss_pred ----------CcceeEEecccccchhcccCCCCCCCCCccccccCCCCCccCCHHHHHHHHHHHHHHHHHHHhcCCCcHH
Q 003561 439 ----------TETAVCNLASIALPRFVREKDVPVESHPSRIVGSRGSKNRFFDFEKLAEVTAIVTENLNKIIDVNYYPVE 508 (811)
Q Consensus 439 ----------~e~~~CNL~SInL~~~v~~~~~~~~~~~~~~~g~~~~~~~~fD~~~L~~~v~~avr~LD~vId~~~~p~~ 508 (811)
.++++|||+||||++||.++ +.+...|||++|+++|+++||+||+|||.+.||+|
T Consensus 1293 ~~~~~GEqpL~py~sCNLgSINL~~fV~~~---------------~~g~~~fD~e~l~~~V~~avR~LDnVID~~~yPlp 1357 (1740)
T PRK08332 1293 MSHNCGEEPLYEYESCNLASINLAKFVKYD---------------ENGKPYFDWDEYAYVIQKVAKYLDNAIDVNKFPLP 1357 (1740)
T ss_pred EecCCCccCCCCCCeeecHHHHHHHHhccc---------------ccCccccCHHHHHHHHHHHHHHHHHHHHhcCCccH
Confidence 01347788888888877542 12234799999999999999999999999999999
Q ss_pred HHHHHhhccCCeeeecchHHHHHHHcCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCCCCCCccccCCCCcc
Q 003561 509 TARRSNLRHRPIGIGVQGLADTFILLGMAFESPEAQQLNKDIFETIYYHALKTSSEIAAKEGPYETYHNSPVSKGILQPD 588 (811)
Q Consensus 509 ~~~~~~~~~R~iGlGv~Glad~L~~~gi~y~S~ea~~l~~~i~e~i~~~a~~aS~eLAke~G~~~~f~~S~~~~G~l~~d 588 (811)
+++++++++|+||||+|||||+|+++||+|+|+||++|+++||+.|+++|+++|++||+|+|+||.|++|+|++|+++++
T Consensus 1358 ~i~~~~~~~R~IGLGvmGLad~L~~lGI~YdSeEA~~~~~~I~e~i~~~A~~aS~eLAkErG~FP~fe~S~y~~G~l~~~ 1437 (1740)
T PRK08332 1358 EIDYNTKLTRRIGVGMMGLADALFKLGIPYNSEEGFKFMRKVTEYLTFYAYKYSVEAAKKRGTFPLYEKTEYPKGELPVE 1437 (1740)
T ss_pred HHHHHhhhcCCcccchhHHHHHHHHcCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCCcccCchhccccccc
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999988
Q ss_pred ccccCCCCcccHHHHHHHHHhcCccccceeccCCCCccccccCCCccccccccceeEEEcccCceEEeChHHHHHHHHcC
Q 003561 589 MWNVIPSDRWDWGVLRDMISKNGVRNSLLVAPMPTASTSQILGNNECFEPYTSNIYSRRVLSGEFVVVNKHLLHDLTEMG 668 (811)
Q Consensus 589 ~~~~~~~~~~dW~~Lr~~i~~~G~RNs~l~AiaPT~stS~i~g~s~gieP~~s~~y~r~~~~g~~~~vn~~l~~~l~~~g 668 (811)
.|........+|++|+++|+++|+|||+++|||||||||+|+|+|+||||+|+++|.|++..|++.++|++|.+.|+++|
T Consensus 1438 ~~~~~~~~~~~W~~L~e~I~k~GlRNs~ltaIAPTGSiSliag~SsGIEPifA~~y~R~v~~G~~~~~np~~~~~l~~~g 1517 (1740)
T PRK08332 1438 GFYHPEIWNLPWDKLVEEIKKYGVRNAMVTTCPPTGSVSMIADTSSGIEPIFALVYKKSVTVGEFYYVDPVFEAELKKRG 1517 (1740)
T ss_pred ccccchhccccHHHHHHHHHHhCcchheeeccCCCcchhhhcCCCCccccchhheeEEeccCceEEEecHHHHHHHHHcC
Confidence 65432222458999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCcHHHhhhhhccCCcccccCCCchHHHhhhhhhccCChHHHHHHHHHhccccccccceeEeeCC-CCHHHHHHHHHHHH
Q 003561 669 IWSPTIKNKIIYDDGSVQKIPEIPEELKMIYKTVWEIKQMTLVDMAVDRGCYIDQSQSLNIHMDQ-PNFKKVTSLHFRTW 747 (811)
Q Consensus 669 ~~~~~~~~~i~~~~Gsv~~i~~~p~~~k~~f~ta~ei~~~~~i~~~a~~Q~~vDqs~S~~l~~~~-~~~~~l~~~~~~Aw 747 (811)
+|+++++.+|..+.|++|+++.+|++++++|+||+||+|.+||+|||++|||||||||+|||+|+ .+.+||.++|++||
T Consensus 1518 ~~~~e~~~~I~~~~gsvq~~~~lpe~~~~~F~TA~DI~~~~hI~mqAa~Qk~VDqaISKTiNlP~dat~eDv~~iY~~Aw 1597 (1740)
T PRK08332 1518 LYSEELLKKISDNYGSVQGLEEIPEDMQRVFVTALDIHWLDHILAQANIQMWLTDSASKTINMINEATVEDVKAAYLIAH 1597 (1740)
T ss_pred CCcHHHHHHHHHhCCCccCcccCChhHhhhcccHhcCCHHHHHHHHHHHhhhccccccceeecCCCCCHHHHHHHHHHHH
Confidence 99999999998888999999999999999999999999999999999999999999999999996 69999999999999
Q ss_pred HcCCceEEEEecCcc
Q 003561 748 SRGLKTGMYYLRSRA 762 (811)
Q Consensus 748 k~GlKt~~YY~r~~~ 762 (811)
++||||+|||.-..+
T Consensus 1598 k~GlKGiTvYRdgs~ 1612 (1740)
T PRK08332 1598 FLGCKGVTVYRDGSL 1612 (1740)
T ss_pred HcCCCEEEEEcCCCc
Confidence 999999999953333
No 28
>cd02888 RNR_II_dimer Class II ribonucleotide reductase, dimeric form. Ribonucleotide reductase (RNR) catalyzes the reductive synthesis of deoxyribonucleotides from their corresponding ribonucleotides. It provides the precursors necessary for DNA synthesis. RNRs are separated into three classes based on their metallocofactor usage. Class I RNRs, found in eukaryotes, bacteria, and bacteriophage, use a diiron-tyrosyl radical. Class II RNRs, found in bacteria, bacteriophage, algae and archaea, use coenzyme B12 (adenosylcobalamin, AdoCbl). Class III RNRs, found in anaerobic bacteria, bacteriophage, and archaea, use an FeS cluster and S-adenosylmethionine to generate a glycyl radical. Many organisms have more than one class of RNR present in their genomes. All three RNRs have a ten-stranded alpha-beta barrel domain that is structurally similar to the domain of PFL (pyruvate formate lyase). Class II RNRs are found in bacteria that can live under both aerobic and anaerobic conditions. Many, bu
Probab=100.00 E-value=7.5e-127 Score=1084.97 Aligned_cols=459 Identities=33% Similarity=0.523 Sum_probs=436.2
Q ss_pred HHHHHHHhcCcEecccccccccCC-CCCCCCccccccccCCCHHHHHHHHHHHHHHHHhcCCcceeeceecCCCCcccCC
Q 003561 187 IKTYHMMSQRWFTHASPTLFNAGT-PRPQLSSCFLVCMKDDSIEGIYETLKECAVISKSAGGIGVSVHNIRATGSYIRGT 265 (811)
Q Consensus 187 ~~~y~~ls~~~~~~atP~l~naGt-~~~~lsSCfl~~~~~Ds~~~I~~~~~~~a~isk~ggGvG~~~s~iR~~Gs~I~g~ 265 (811)
++||++|++++|+|+||+|+|+|+ +++||+||||+++++||+++|+++++++++++|.|||||+|+|.|||+|++|+|+
T Consensus 2 ~~~~~~l~~~~~~p~tP~l~naG~~~~~~lssCfv~~~~dds~~~I~~~~~~~a~l~k~gGGvG~~~s~iRp~G~~i~~~ 81 (464)
T cd02888 2 DEFFYLLLSQGFIPNSPTLMNAGTGELGQLSACFVLPVEDDSIEGIFDALKEAALIFKRGGGVGYNFSRLRPKGDIVKST 81 (464)
T ss_pred hHHHHHHHcCCeecCChHhhcCCCCCCCCceeeEecCCCCCCHHHHHHHHHHHHHHHhcCCeEEeeccccCCCCCcccCC
Confidence 689999999999999999999999 8999999999998545999999999999999999999999999999999999999
Q ss_pred CCccCCcccHHHHHHHHHHHHhhCCCccccceEeeccCCcccHHHHHHhhhcCCcccccccccceecccCHHHHHHHHcC
Q 003561 266 NGTSNGIVPMLRVFNDTARYVDQGGGKRKGAFAVYLEPWHADIFEFLNLKKNHGKEEHRARDLFYALWVPDLFMERVQTN 345 (811)
Q Consensus 266 ~g~ssG~vp~lk~~~~~~~~v~QgG~~R~ga~~vyl~~wH~DI~~Fl~~K~~~g~e~~r~~~l~~sv~ipD~Fm~rv~~~ 345 (811)
+|+|||++|||++||+++.+++||| +||||.|+||++|||||++||++|++.+++ .|++++|+||+|||+||++|++|
T Consensus 82 ~g~ssG~v~f~~~~d~~~~~i~qgg-~RrgA~~~~l~~~HpDi~~Fi~~K~~~~~~-~~~~~~n~sv~i~D~Fm~~v~~~ 159 (464)
T cd02888 82 GGVASGPVSFMRVFDAATGVIKQGG-TRRGANMGVLDVDHPDIEEFIDAKMKEEKT-VVLQNFNISVAVTDAFMEAVEND 159 (464)
T ss_pred CCCCCChHhHHHHHHHHHHHHHhCC-cccceeEEEEcCCCccHHHHHHHccccCcc-cccccceeEEEeCHHHHHHHHcC
Confidence 9999999999999999999999998 899999999999999999999999988764 57899999999999999999999
Q ss_pred CceEEecCCCCCcchhhhhhHHHHHHHHHHhcCceeEEEeHHHHHHHHHHHHHhhCCceeEehhhhhhhcCCCCCCceee
Q 003561 346 GQWSLFCPNEASGLADCWGAEFEKLYTHYEREGKAKKVVQAQNLWFEILTSQIETGTPYMLFKDTCNRKSNQQNLGTIKS 425 (811)
Q Consensus 346 ~~W~Lf~P~~~~~L~~~yg~eF~~~Y~~~e~~~~~~~~v~Ar~L~~~I~~~~~etG~P~i~f~D~~Nr~~~~~~~g~I~~ 425 (811)
++|+||+|+++ .++..+++|+||+||++|++++|+||+|||+|+|++|+++|+++.|+|.+
T Consensus 160 ~~w~L~~p~~~-------------------~~~~~~~~v~Arel~~~i~~~~~~tG~Pgi~f~D~~N~~~~~~~~~~i~~ 220 (464)
T cd02888 160 EPWELRNPREP-------------------DTGKVYRTVPARELWDKIVEAAWDSADPGVLFIDTINRWNPLPGLGRINA 220 (464)
T ss_pred CCeEeeCcccc-------------------CCCceeeEeeHHHHHHHHHHHHHHHCCCeEEEhHHHHhhCCccccCceee
Confidence 99999999864 24567899999999999999999999999999999999999999999999
Q ss_pred ecCCccccccCCCCcceeEEecccccchhcccCCCCCCCCCccccccCCCCCccCCHHHHHHHHHHHHHHHHHHHhcCCC
Q 003561 426 SNLCTEIIEYTSPTETAVCNLASIALPRFVREKDVPVESHPSRIVGSRGSKNRFFDFEKLAEVTAIVTENLNKIIDVNYY 505 (811)
Q Consensus 426 sNlC~EI~~~~~~~e~~~CNL~SInL~~~v~~~~~~~~~~~~~~~g~~~~~~~~fD~~~L~~~v~~avr~LD~vId~~~~ 505 (811)
||||+||+|+. .++|||+||||++|+.++ ..+..|||++|+++|+++||+||+|||.+.|
T Consensus 221 sNpC~Ei~l~~----~~~CnL~SiNL~~fv~~~----------------~~~~~fD~~~l~~~v~~avr~LD~vid~~~~ 280 (464)
T cd02888 221 TNPCGEQPLLP----YESCNLGSINLSKFVKNP----------------FGGASFDFERLREAVRLAVRFLDNVIDVNRY 280 (464)
T ss_pred ccCCcccccCC----CCcccchhhhHHHHhccc----------------CcccccCHHHHHHHHHHHHHHHHHHHhcccC
Confidence 99999999974 469999999999999752 1114699999999999999999999999999
Q ss_pred cHHHHHHHhhccCCeeeecchHHHHHHHcCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCCCCCCccccCCC
Q 003561 506 PVETARRSNLRHRPIGIGVQGLADTFILLGMAFESPEAQQLNKDIFETIYYHALKTSSEIAAKEGPYETYHNSPVSKGIL 585 (811)
Q Consensus 506 p~~~~~~~~~~~R~iGlGv~Glad~L~~~gi~y~S~ea~~l~~~i~e~i~~~a~~aS~eLAke~G~~~~f~~S~~~~G~l 585 (811)
|+|++++.++++|+||||+|||||+|+++|++|+|+||++++++|||+|+|+|+++|++||+|+|+||.|++|+|++|.+
T Consensus 281 p~~~~~~~~~~~R~iGlG~~Glad~L~~~gi~y~S~ea~~~~~~i~~~i~~~a~~aS~~LA~e~G~fp~f~~s~~~~g~~ 360 (464)
T cd02888 281 PLPEIAEETKATRRIGLGVMGLADMLIKLGIPYDSEEARELAERIMSFIRDAAYRASAELAKERGPFPLFDASRYLMLKV 360 (464)
T ss_pred ChHHHHHHhhccCceeecHHHHHHHHHHcCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCcCCCcCcChhhcccc
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CccccccCCCCcccHHHHHHHHHhcCccccceeccCCCCccccccCCCccccccccceeEEEcccCceEEeChHHHHHHH
Q 003561 586 QPDMWNVIPSDRWDWGVLRDMISKNGVRNSLLVAPMPTASTSQILGNNECFEPYTSNIYSRRVLSGEFVVVNKHLLHDLT 665 (811)
Q Consensus 586 ~~d~~~~~~~~~~dW~~Lr~~i~~~G~RNs~l~AiaPT~stS~i~g~s~gieP~~s~~y~r~~~~g~~~~vn~~l~~~l~ 665 (811)
+++ ...+|++||++|++||+|||+++|||||+|||+|+|+|+||||+|
T Consensus 361 ~~~-------~~~~w~~l~~~i~~~G~RNs~l~aiAPTgs~S~i~g~s~gieP~~------------------------- 408 (464)
T cd02888 361 IVN-------AKELPDDVLEEIEKYGIRNAHLTTIAPTGTISLIAGTSSGIEPIF------------------------- 408 (464)
T ss_pred hhc-------chhcHHHHHHHHHHhCcchhceeeeCCcHHHHHHhCCCCCcCCCC-------------------------
Confidence 865 235799999999999999999999999999999999999999997
Q ss_pred HcCCCcHHHhhhhhccCCcccccCCCchHHHhhhhhhccCChHHHHHHHHHhccccccccceeEeeCC-CCHHHHHHHHH
Q 003561 666 EMGIWSPTIKNKIIYDDGSVQKIPEIPEELKMIYKTVWEIKQMTLVDMAVDRGCYIDQSQSLNIHMDQ-PNFKKVTSLHF 744 (811)
Q Consensus 666 ~~g~~~~~~~~~i~~~~Gsv~~i~~~p~~~k~~f~ta~ei~~~~~i~~~a~~Q~~vDqs~S~~l~~~~-~~~~~l~~~~~ 744 (811)
+|++||+|||++|||||||||+|+|+++ .+.++|.++|+
T Consensus 409 ----------------------------------------~~~~~i~~~a~~Q~~iDqsiS~tin~~~~~t~~d~~~~y~ 448 (464)
T cd02888 409 ----------------------------------------SPEDHVRMQAALQPWVDGAISKTINLPNDATVEDVEAVYL 448 (464)
T ss_pred ----------------------------------------CHHHHHHHHHHHhccchhhhcceeecCCCCCHHHHHHHHH
Confidence 7899999999999999999999999986 68999999999
Q ss_pred HHHHcCCceEEEEe
Q 003561 745 RTWSRGLKTGMYYL 758 (811)
Q Consensus 745 ~Awk~GlKt~~YY~ 758 (811)
+||++||||++||.
T Consensus 449 ~aw~~G~K~~t~yR 462 (464)
T cd02888 449 LAWKLGLKGITVYR 462 (464)
T ss_pred HHHHhCCCEEEEeC
Confidence 99999999999993
No 29
>COG0209 NrdA Ribonucleotide reductase, alpha subunit [Nucleotide transport and metabolism]
Probab=100.00 E-value=1.8e-124 Score=1107.50 Aligned_cols=623 Identities=38% Similarity=0.641 Sum_probs=561.1
Q ss_pred HHHhhcCCCCCHHHHHHHHHHHHHhhcc-CCCChHHHHHHHHHHHHHHHhhhhhhHHHHHHHHhhhhccCCcccCcChHH
Q 003561 42 KVCAGVYKGVTTSQLDELAAETAAAMTT-NHPDYASLAARIAVSNLHKNTKKSFSETIKDMYNHYNERSGLKAPLIADDI 120 (811)
Q Consensus 42 ~~~~~l~~gitt~ei~~~~~~~a~~~~~-~~p~y~~lA~rl~~~~l~k~~~~~~~~~~~~l~~~~~~~~~~~~~l~~~~~ 120 (811)
+...+++++++ +.+.++.++..+.. .+|+|+.+|+|+++..+++++...+.. ...++..+. ..+..+.++..+
T Consensus 4 ~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~~-~~~~~~~~~--~~~~~~~~~~~~ 77 (651)
T COG0209 4 RTVIGFYDGIT---IAENLILAALTVIEEDDPDVQRLAARLAGSDLRKEAVRQFGR-FDVLDEKVF--ALVANGYYDQRL 77 (651)
T ss_pred ccccchhcchh---HHHHHhhhhhhhcCccCccHHHHHHHHHHHHHHHHHhccccc-hhhhhhHHH--HHHhhhhhHHHH
Confidence 44567889988 66666666666666 699999999999999999999876552 233333221 234455777777
Q ss_pred HH-HHHhcHHHHHHhhcccccCCCChhhHHHHHHhhcccc-CCc-ccCCHHHHHHHHHhHhccCC-----HHHHHHHHHH
Q 003561 121 YE-IIMKNAACLDSEIIYDRDFDYDYFGFKTLERSYLLKV-QGK-VVERPQHMLMRVSIGIHKDD-----IDSAIKTYHM 192 (811)
Q Consensus 121 ~~-~~~~~~~~l~~~i~~~rd~~~~y~g~~~l~~~Yl~k~-~g~-~~E~pq~~~~RvA~~l~~~~-----~~~~~~~y~~ 192 (811)
++ +..+++..+...+.++||..|+|+|+++|+++|++|. +++ ++|+||++|||||+.+|..+ +++|++||++
T Consensus 78 ~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~l~~rYl~~~~~~~~~~E~~~~~~~~vA~~la~~e~~~~~~~~a~~~y~~ 157 (651)
T COG0209 78 LRLYSREDLDDLNKKILLERDRQFSYAAAKVLYSRYLLKDEDGSEILELPQDLFMRVALLLAQNEAPERRLEWAKEFYDL 157 (651)
T ss_pred HHhhhhhHHHHHHHhhhhcchhhhhHHHHHHHHHhhhcccccccccccCHHHHHHHHHHHhccCCccchhhHHHHHHHHH
Confidence 75 5666899999999999999999999999999999995 444 79999999999999999854 5699999999
Q ss_pred HhcCcEecccccccccCCCCCCCCccccccccCCCHHHHHHHHHHHHHHHHhcCCcceeeceecCCCCcccCCCCccCCc
Q 003561 193 MSQRWFTHASPTLFNAGTPRPQLSSCFLVCMKDDSIEGIYETLKECAVISKSAGGIGVSVHNIRATGSYIRGTNGTSNGI 272 (811)
Q Consensus 193 ls~~~~~~atP~l~naGt~~~~lsSCfl~~~~~Ds~~~I~~~~~~~a~isk~ggGvG~~~s~iR~~Gs~I~g~~g~ssG~ 272 (811)
|++++|+|+||||+|+|++++||+||||+++.+|+ +|+
T Consensus 158 ~~~~~~~patPtl~n~~~~~~qlssCfv~~~~dd~------------------------------------------sG~ 195 (651)
T COG0209 158 MSSLRFMPATPTLLNGGTPRGQLSSCFVLPVEDDS------------------------------------------SGV 195 (651)
T ss_pred HhcCeeecCCcceecCCCCCCceeeeEEecccCCC------------------------------------------CCc
Confidence 99999999999999999999999999999976777 899
Q ss_pred ccHHHHHHHHHHHHhhCCCccccceEeeccCCcccHHHHHHhhhcCCcccccccccceecccCHHHHHHHHcCCceEEec
Q 003561 273 VPMLRVFNDTARYVDQGGGKRKGAFAVYLEPWHADIFEFLNLKKNHGKEEHRARDLFYALWVPDLFMERVQTNGQWSLFC 352 (811)
Q Consensus 273 vp~lk~~~~~~~~v~QgG~~R~ga~~vyl~~wH~DI~~Fl~~K~~~g~e~~r~~~l~~sv~ipD~Fm~rv~~~~~W~Lf~ 352 (811)
|||||+||+++.+|+||| +|+||.|+||++|||||++||++|+++|++.+|.++++++++|||+||++++++++|+||+
T Consensus 196 i~~~k~~d~~~~~i~QgG-~R~GA~~v~L~~~HpDi~~fl~~k~~~gde~~r~~~~~~~~~i~d~~~~~~~~~~~~~l~~ 274 (651)
T COG0209 196 VPFMKLLDDAFDAINQGG-VRRGAQAVYLDIWHPDIEEFLDAKRNNGDEILRAFDISVGVWIPDLFMKRAKEGEDWTLFS 274 (651)
T ss_pred hhHHHHHHHHHHHHhhcC-cCCCCeEEeecCCCccHHHHHHHHhhccccceeeeccccceeecHHHHHHHhcCCceEeeC
Confidence 999999999999999999 9999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCCCcchhhhhhHHHHHHHHHHh-cCceeEEEeHHHHHHHHHHHHHhhCCceeEehhhhhhhcCCC-CCCceeeecCCc
Q 003561 353 PNEASGLADCWGAEFEKLYTHYER-EGKAKKVVQAQNLWFEILTSQIETGTPYMLFKDTCNRKSNQQ-NLGTIKSSNLCT 430 (811)
Q Consensus 353 P~~~~~L~~~yg~eF~~~Y~~~e~-~~~~~~~v~Ar~L~~~I~~~~~etG~P~i~f~D~~Nr~~~~~-~~g~I~~sNlC~ 430 (811)
|++.-++.+.||++|+. |.+++. ++..+++|+||+||.+|++.+|+||+||++|+|++|++++.. +.|+|++||||+
T Consensus 275 P~~~~~~~~~~~~~~~~-y~~~~~~~~~~~~~v~Ar~l~~~i~~~~~esG~P~l~f~D~~N~~~~~~~~~g~I~~sNlC~ 353 (651)
T COG0209 275 PRDGYEAPDVYGAEFEE-YAEYEADPGIRKKRIKARELFDKLAEAAFETGDPYLIFVDTLNRRNPNAEGGGAIRASNLCS 353 (651)
T ss_pred CcccccccccchhhHHH-HHHHhcCCCeeeeeEcHHHHHHHHHHHHHhcCCCeeEecccccCCCCCcccCceeeccccch
Confidence 99877789999999999 999997 467889999999999999999999999999999999777654 567999999999
Q ss_pred cccccC-------CCCcceeEEecccccchhcccCCCCCCCCCccccccCCCCCccCCHHHHHHHHHHHHHHHHHHHhcC
Q 003561 431 EIIEYT-------SPTETAVCNLASIALPRFVREKDVPVESHPSRIVGSRGSKNRFFDFEKLAEVTAIVTENLNKIIDVN 503 (811)
Q Consensus 431 EI~~~~-------~~~e~~~CNL~SInL~~~v~~~~~~~~~~~~~~~g~~~~~~~~fD~~~L~~~v~~avr~LD~vId~~ 503 (811)
||.|++ ...++++|||+||||.+++.. + +.|+++++++||+||+|||++
T Consensus 354 Ei~~~~~~~~~~~~~~~~~~CNL~siNl~~~~~~-----------------------~-~~~~~~v~~~vr~Ld~vid~~ 409 (651)
T COG0209 354 EILQRTKPLSLEQPLGEDASCNLGSINLAKFVKY-----------------------G-DGLAELVAVAVRALDNVIDLN 409 (651)
T ss_pred hhhccccccccccCCCCceeeechhhhHHHHHhc-----------------------c-hhHHHHHHHHHHHHHHHHHhc
Confidence 999887 456889999999999999852 2 349999999999999999999
Q ss_pred CCcHHHHHHHhhccCCeeeecchHHHHHHHcCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCCCCCCccccC
Q 003561 504 YYPVETARRSNLRHRPIGIGVQGLADTFILLGMAFESPEAQQLNKDIFETIYYHALKTSSEIAAKEGPYETYHNSPVSKG 583 (811)
Q Consensus 504 ~~p~~~~~~~~~~~R~iGlGv~Glad~L~~~gi~y~S~ea~~l~~~i~e~i~~~a~~aS~eLAke~G~~~~f~~S~~~~G 583 (811)
.||+|+++++|.++|+||||+|||||+|+++|++|+|+||++|++++||.|+++|+++|++||+|+|+|+.|++|.|++|
T Consensus 410 ~~p~~~~~~~n~~~R~iGlGvmgl~~~La~~~i~y~S~ea~~~~~~~~e~i~~~a~~aS~elA~e~G~~~~f~~s~~~~g 489 (651)
T COG0209 410 PYPVPEAERANAESRAIGLGVMGLADLLAQLGIPYGSEEALKFNDRLFEYIAYYALKASAELAKERGPYPYFEGSRWARG 489 (651)
T ss_pred CCCCHHHHHHhhhcCccccchhhHHHHHHhCCCCcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCCCCCChhhcc
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCccccccCCCCcccHHHHHHHHHhcCccccceeccCCCCccccccCCCccccccccceeEEEcccCceEEeChHHHHH
Q 003561 584 ILQPDMWNVIPSDRWDWGVLRDMISKNGVRNSLLVAPMPTASTSQILGNNECFEPYTSNIYSRRVLSGEFVVVNKHLLHD 663 (811)
Q Consensus 584 ~l~~d~~~~~~~~~~dW~~Lr~~i~~~G~RNs~l~AiaPT~stS~i~g~s~gieP~~s~~y~r~~~~g~~~~vn~~l~~~ 663 (811)
.++.+.+...... .+|+.||+++++||+|||+++|||||||+|+|+|+|+||||+|+++|.|....|.+.++++++.++
T Consensus 490 ~~~~~~~~~~~~~-~~w~~l~~~v~~~G~rns~~~aiaPtgsiS~i~~~t~~IeP~~~~~~~r~~~~g~~~~~~~~l~~~ 568 (651)
T COG0209 490 ILPIDYPRLFGIT-EDWEKLREDIKKHGLRNSYLTAIAPTGSISYIAGTTSGIEPIFALVYFRETKGGRFYYVVPPLFED 568 (651)
T ss_pred ccccchhhhcccc-ccHHHHHHHHHHhCcccccceeeCCccchhHhhCCCCCcCcChhheeeEecccceEEEeCcHHHHH
Confidence 9987763322112 899999999999999999999999999999999999999999999999998899999999998665
Q ss_pred HHHcCCCcHHHhhhhhccCCcccccCCCchHHHhhhhhhccCChHHHHHHHHHhccccccccceeEeeCC-CCHHHHHHH
Q 003561 664 LTEMGIWSPTIKNKIIYDDGSVQKIPEIPEELKMIYKTVWEIKQMTLVDMAVDRGCYIDQSQSLNIHMDQ-PNFKKVTSL 742 (811)
Q Consensus 664 l~~~g~~~~~~~~~i~~~~Gsv~~i~~~p~~~k~~f~ta~ei~~~~~i~~~a~~Q~~vDqs~S~~l~~~~-~~~~~l~~~ 742 (811)
+.. .|..|++|+|.++|+|+|++|+|||||||+|||+++ .+.+|+..+
T Consensus 569 ~~~-------------------------------~~~~a~~i~~~~~i~~~a~~q~~iDq~iS~tl~~~~~~~~~d~~~~ 617 (651)
T COG0209 569 LLA-------------------------------YYGLAYEIDPLWHIDMQAAAQRWIDQGISKTLNLPNTATTKDLNKA 617 (651)
T ss_pred HHH-------------------------------hhhhhhccChHHHHHHHHHhhcccccceeeeecCCCCCCHHHHHHH
Confidence 543 444599999999999999999999999999999995 788999999
Q ss_pred HHHHHHcCCceEEEEecCccccccccccc
Q 003561 743 HFRTWSRGLKTGMYYLRSRAAADAIKFTV 771 (811)
Q Consensus 743 ~~~Awk~GlKt~~YY~r~~~~~~~~~~~~ 771 (811)
|++||++|+|| +||+|+++..+..++.+
T Consensus 618 ~~~Aw~~g~K~-~yY~~~~~~~~~~~~~~ 645 (651)
T COG0209 618 YLYAWKLGLKT-TYYRRTSQAAQVLTVVL 645 (651)
T ss_pred HHHHHHcCCce-EEEecCccccccccccc
Confidence 99999999999 99999999888866653
No 30
>PRK07562 ribonucleotide-diphosphate reductase subunit alpha; Validated
Probab=100.00 E-value=2.4e-122 Score=1100.57 Aligned_cols=558 Identities=23% Similarity=0.394 Sum_probs=494.9
Q ss_pred C-CHHHHHHHHHhHhcc--------CCHHHHHHHHH----HHhcCcEecccccccccCC---------------------
Q 003561 165 E-RPQHMLMRVSIGIHK--------DDIDSAIKTYH----MMSQRWFTHASPTLFNAGT--------------------- 210 (811)
Q Consensus 165 E-~pq~~~~RvA~~l~~--------~~~~~~~~~y~----~ls~~~~~~atP~l~naGt--------------------- 210 (811)
| +-.++|-|+|.+... ...+.++.||+ +|.+|++.|+||+|||.|.
T Consensus 103 e~s~~q~~~r~~~~~~~~g~~~gyf~~~~da~~f~de~~~~l~~q~~apnSP~wfN~Gl~~~yg~~~~~~~~~~~d~~~~ 182 (1220)
T PRK07562 103 ETSAKQVFDRLAGCWTYWGWKGGYFDSEEDARAFYDELRYMLATQMVAPNSPQWFNTGLHWAYGIDGPGQGHFYVDPKTG 182 (1220)
T ss_pred cccHHHHHHHHHHHHHHHHhhCCccCCHHHHHHHHHHHHHHHHhcCcCCCCcceeeccccccccccCccccccccccccc
Confidence 5 567899999988652 24578899999 9999999999999999997
Q ss_pred ---------CCCCCCccccccccCCCHH---HHHHHHHHHHHHHHhcCCcceeeceecCCCCcccCCCCccCCcccHHHH
Q 003561 211 ---------PRPQLSSCFLVCMKDDSIE---GIYETLKECAVISKSAGGIGVSVHNIRATGSYIRGTNGTSNGIVPMLRV 278 (811)
Q Consensus 211 ---------~~~~lsSCfl~~~~~Ds~~---~I~~~~~~~a~isk~ggGvG~~~s~iR~~Gs~I~g~~g~ssG~vp~lk~ 278 (811)
.++|++||||+++ +||++ +|+++++++|+|+|+|||+|+|||+|||+|++|+| +|+|||+|||||+
T Consensus 183 ~~~~~~~~y~~pQlsSCFI~~V-~Dsl~~~~gI~d~~~~~A~l~K~GGGtG~nfS~LR~~Ge~Isg-gG~SSG~vsFmki 260 (1220)
T PRK07562 183 KLTKSKSAYEHPQPHACFIQSV-EDDLVNEGGIMDLWVREARLFKYGSGTGSNFSNLRGEGEKLSG-GGKSSGLMSFLKI 260 (1220)
T ss_pred cccccccccCCCCcceEEeccc-CCcccccchHHHHHHHHHHHHhcCCeEeecccccCCCCCcCCC-CCcCCChhhHHHH
Confidence 5789999999987 79994 99999999999999999999999999999999998 7999999999999
Q ss_pred HHHHHHHHhhCCCccccceEeeccCCcccHHHHHHhhhcC-----------------------------Ccccc------
Q 003561 279 FNDTARYVDQGGGKRKGAFAVYLEPWHADIFEFLNLKKNH-----------------------------GKEEH------ 323 (811)
Q Consensus 279 ~~~~~~~v~QgG~~R~ga~~vyl~~wH~DI~~Fl~~K~~~-----------------------------g~e~~------ 323 (811)
||+++.+|+|||++||||.|+||++|||||++||++|++. |+++.
T Consensus 261 fD~aa~aIkQGG~tRRGA~mv~LdvdHPDIeeFI~~K~~ee~Kvaalv~gski~~k~lk~I~~A~~~~~G~~~~~~DP~~ 340 (1220)
T PRK07562 261 GDRAAGAIKSGGTTRRAAKMVIVDIDHPDIEEFIDWKVKEEQKVAALVTGSKIVSKHLKAIMKACVNCEGDGDDCFDPAK 340 (1220)
T ss_pred HHHHHHHHHhCCCCccCceEEEecCCcccHHHHHHhccchhhhHHhhhhcchHHHHHHHHHHHHHHhccccccccCCccc
Confidence 9999999999996699999999999999999999999741 21110
Q ss_pred ----------------------------------------------------cccccceecccCHHHHHHHHcCCceEEe
Q 003561 324 ----------------------------------------------------RARDLFYALWVPDLFMERVQTNGQWSLF 351 (811)
Q Consensus 324 ----------------------------------------------------r~~~l~~sv~ipD~Fm~rv~~~~~W~Lf 351 (811)
...|+|+||+|+|+||++|++|++|.|+
T Consensus 341 NpaLk~aI~~Ak~~~vP~~~I~RvI~~A~qg~~~~~f~~yd~~~~~e~y~tv~~qN~N~SV~VtDeFM~aVe~d~~w~L~ 420 (1220)
T PRK07562 341 NPALKREIKAAKKALVPENYIKRVIQFARQGYTDIDFPTYDTDWDSEAYLTVSGQNSNNSVRVTDEFLRAVENDGDWNLT 420 (1220)
T ss_pred cHHHHHHHHHHHhccCCHHHHHHHHHHhhcccccccccccccccccchhcccccccccceeccCHHHHHHHHCCCCeeee
Confidence 1257899999999999999999999999
Q ss_pred cCCCCCcchhhhhhHHHHHHHHHHhcCceeEEEeHHHHHHHHHHHHHhhCCceeEehhhhhhhcCCCCCCceeeecCCcc
Q 003561 352 CPNEASGLADCWGAEFEKLYTHYEREGKAKKVVQAQNLWFEILTSQIETGTPYMLFKDTCNRKSNQQNLGTIKSSNLCTE 431 (811)
Q Consensus 352 ~P~~~~~L~~~yg~eF~~~Y~~~e~~~~~~~~v~Ar~L~~~I~~~~~etG~P~i~f~D~~Nr~~~~~~~g~I~~sNlC~E 431 (811)
+|. +|+..++|+||+||++|++++|+||+|||+|+|++|+++|+++.|+|++||||+|
T Consensus 421 ~p~----------------------~gkv~ktV~AReLw~kI~~aawetGdPgI~F~DtiN~~~~~~~~G~I~aSNPCsE 478 (1220)
T PRK07562 421 ART----------------------DGKVAKTLKARDLWEKIGYAAWASADPGLQFNTTINDWHTCPASGPIRASNPCSE 478 (1220)
T ss_pred ccC----------------------CCceeeEeeHHHHHHHHHHHHHHHCCceEEEehhhhhcCCCccCCeeEeecCccc
Confidence 986 3567899999999999999999999999999999999999999999999999999
Q ss_pred ccccCCCCcceeEEecccccchhcccCCCCCCCCCccccccCCCCCccCCHHHHHHHHHHHHHHHHHHHhcCCCcHHHHH
Q 003561 432 IIEYTSPTETAVCNLASIALPRFVREKDVPVESHPSRIVGSRGSKNRFFDFEKLAEVTAIVTENLNKIIDVNYYPVETAR 511 (811)
Q Consensus 432 I~~~~~~~e~~~CNL~SInL~~~v~~~~~~~~~~~~~~~g~~~~~~~~fD~~~L~~~v~~avr~LD~vId~~~~p~~~~~ 511 (811)
|+++.. .+|||+||||.+|+.+. +..|||+.|+++|++++++||++||.+.||+++++
T Consensus 479 i~lld~----~aCNLaSINL~~Fv~~~------------------~~~fD~e~l~~avrl~t~~LDi~id~~~yP~~ei~ 536 (1220)
T PRK07562 479 YMFLDD----TACNLASLNLLTFRDED------------------TKRFDVEAYEHACRLWTVVLEISVLMAQFPSKEIA 536 (1220)
T ss_pred ccCCCC----CcccchhhhHHHHhcCC------------------CCccCHHHHHHHHHHHHHHHHHHhhcccCCcHHHH
Confidence 987632 37999999999998642 23599999999999999999999999999999999
Q ss_pred HHhhccCCeeeecchHHHHHHHcCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCCCCCCcc-----------
Q 003561 512 RSNLRHRPIGIGVQGLADTFILLGMAFESPEAQQLNKDIFETIYYHALKTSSEIAAKEGPYETYHNSPV----------- 580 (811)
Q Consensus 512 ~~~~~~R~iGlGv~Glad~L~~~gi~y~S~ea~~l~~~i~e~i~~~a~~aS~eLAke~G~~~~f~~S~~----------- 580 (811)
+.++++|+||||+|||||+|+++||||+|+||++|+++||+.|+++|+++|++||+|+|+||.|++|+|
T Consensus 537 ~~~~~~R~IGLGvmGLadlL~~lGipYdS~EAr~la~~I~~~m~~~Ay~aSaELAkE~G~Fp~f~~s~~~~lrv~r~h~~ 616 (1220)
T PRK07562 537 ELSYEFRTLGLGYANIGGLLMTMGIPYDSDEGRAICGALSAIMTGVAYATSAEMAKELGPFPGYEKNADHMLRVIRNHRR 616 (1220)
T ss_pred HHHhcCCCeeehHHHHHHHHHHcCCCcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCcccChhhhhhhhhhhhh
Confidence 999999999999999999999999999999999999999999999999999999999999999999997
Q ss_pred -ccCCCC-ccccccCC---------------CCcccHHHHHHHHHhcCccccceeccCCCCccccccCC-Cccccccccc
Q 003561 581 -SKGILQ-PDMWNVIP---------------SDRWDWGVLRDMISKNGVRNSLLVAPMPTASTSQILGN-NECFEPYTSN 642 (811)
Q Consensus 581 -~~G~l~-~d~~~~~~---------------~~~~dW~~Lr~~i~~~G~RNs~l~AiaPT~stS~i~g~-s~gieP~~s~ 642 (811)
+.|.++ ++.++..| ....+|++|++.+++||+|||++++||||||||+|+|+ |+||||.|++
T Consensus 617 aa~g~~~gy~~~~~~p~~~~~~~~~~~~l~~~a~~~W~~l~~~i~k~G~RNA~ltaIAPTGTISlI~d~dTtGIEP~fAl 696 (1220)
T PRK07562 617 AAHGESEGYEGLSVNPVPLDHANCPDQDLVAHAKAAWDKALELGEKHGYRNAQVTVIAPTGTIGLVMDCDTTGIEPDFAL 696 (1220)
T ss_pred hhccccccccccccCcccccccccchhhhccchhhhHHHHHHHHHHhCcccccccccCCcHHHHHhcCCCCCCcccCccc
Confidence 334332 33333222 12468999999999999999999999999999999999 9999999999
Q ss_pred eeEEEcc-cCceEEeChHHHHHHHHcCCCcHHHhhhhh--ccCCcccccCCCc---------------------------
Q 003561 643 IYSRRVL-SGEFVVVNKHLLHDLTEMGIWSPTIKNKII--YDDGSVQKIPEIP--------------------------- 692 (811)
Q Consensus 643 ~y~r~~~-~g~~~~vn~~l~~~l~~~g~~~~~~~~~i~--~~~Gsv~~i~~~p--------------------------- 692 (811)
+|.|+.. +|+|.+||+++.++|+++|+|++++.+.+. ..+|+++++|.+|
T Consensus 697 v~~kkl~gGg~f~ivN~~l~~~L~~lG~~~~~i~~i~~~~~~~Gsl~~~~~i~~~~l~~~Gf~~~~~~~~~~~l~~~fdi 776 (1220)
T PRK07562 697 VKFKKLAGGGYFKIINRAVPEALRTLGYSESQIAEIEAYAVGHGTLNQAPGINHSTLKAKGFTDEKIEKVEAALKSAFDI 776 (1220)
T ss_pred eEEEEeccceeEEEEcHHHHHHHHHcCCCHHHHHHHHHHhhcCCCccCCCCCCHHHHhhcCCcHHHHHHHHHHhhhhhhh
Confidence 9887755 568999999999999999999877755442 2578888777664
Q ss_pred ---------------------------------------------------------------hHHHhhhhhhc------
Q 003561 693 ---------------------------------------------------------------EELKMIYKTVW------ 703 (811)
Q Consensus 693 ---------------------------------------------------------------~~~k~~f~ta~------ 703 (811)
++...+|.+|.
T Consensus 777 ~~~fn~~~lg~~f~~~~lg~~~~~~~~~~f~ll~~~g~t~~~i~aan~~v~g~~~~e~ap~l~~eh~~vFd~A~~~g~~g 856 (1220)
T PRK07562 777 KFAFNKWTLGEDFCKDTLGIPAEQLNDPSFDLLEHLGFSKKDIEAANDHVCGAMTLEGAPFLKAEHLPVFDCANPCGKIG 856 (1220)
T ss_pred hhhhcccccchhhhhhcccCcHhhhccccchhhhhcccchhhHHHhhhhcccccccccCcccchhhhhhccccccccccc
Confidence 33345778874
Q ss_pred --cCChHHHHHHHHHhccccccccceeEeeCC-CCHHHHHHHHHHHHHcCCceEEEEecCcccccccc
Q 003561 704 --EIKQMTLVDMAVDRGCYIDQSQSLNIHMDQ-PNFKKVTSLHFRTWSRGLKTGMYYLRSRAAADAIK 768 (811)
Q Consensus 704 --ei~~~~~i~~~a~~Q~~vDqs~S~~l~~~~-~~~~~l~~~~~~Awk~GlKt~~YY~r~~~~~~~~~ 768 (811)
+|++++||+|+|+.|||||.+||+|||+|+ +|++|+.++|+.||++|||+++.|.-..+..++..
T Consensus 857 ~r~i~~~~Hi~M~aA~Q~fis~aISKTvNmP~~ATveDv~~~y~~a~~lG~KaitlYRdgsk~~qpL~ 924 (1220)
T PRK07562 857 KRYLSVESHIRMMAAAQPFISGAISKTINMPNEATVEDCKNAYMLSWKLALKANALYRDGSKLSQPLN 924 (1220)
T ss_pred cccCCHHHHHHHHHHhhhhccccccceeeCCCCCCHHHHHHHHHHHHHhCCcceEEEecCCccccccc
Confidence 899999999999999999999999999995 89999999999999999999999976555555443
No 31
>cd01676 RNR_II_monomer Class II ribonucleotide reductase, monomeric form. Ribonucleotide reductase (RNR) catalyzes the reductive synthesis of deoxyribonucleotides from their corresponding ribonucleotides. It provides the precursors necessary for DNA synthesis. RNRs are separated into three classes based on their metallocofactor usage. Class I RNRs, found in eukaryotes, bacteria, and bacteriophage, use a diiron-tyrosyl radical. Class II RNRs, found in bacteria, bacteriophage, algae and archaea, use coenzyme B12 (adenosylcobalamin, AdoCbl). Class III RNRs, found in anaerobic bacteria, bacteriophage, and archaea, use an FeS cluster and S-adenosylmethionine to generate a glycyl radical. Many organisms have more than one class of RNR present in their genomes. All three RNRs have a ten-stranded alpha-beta barrel domain that is structurally similar to the domain of PFL (pyruvate formate lyase). Class II RNRs are found in bacteria that can live under both aerobic and anaerobic conditions. Man
Probab=100.00 E-value=6.2e-84 Score=752.96 Aligned_cols=494 Identities=17% Similarity=0.142 Sum_probs=411.4
Q ss_pred HHHHhhccc-cCCcccCCHHHHHHHHHhHhcc--C-------------CHHHHHHHHHHHhcCcEecccccccccCCC--
Q 003561 150 TLERSYLLK-VQGKVVERPQHMLMRVSIGIHK--D-------------DIDSAIKTYHMMSQRWFTHASPTLFNAGTP-- 211 (811)
Q Consensus 150 ~l~~~Yl~k-~~g~~~E~pq~~~~RvA~~l~~--~-------------~~~~~~~~y~~ls~~~~~~atP~l~naGt~-- 211 (811)
+++++|... .+|.. |+.+++..||-.+... . ..++++++|+++.++++.|++++|.-+||+
T Consensus 4 v~~RTYsR~~~~g~r-E~W~etv~Rvv~~~~~l~~~~~~~~~~~~~~~~~~e~~~l~~~~~~~k~lPsGR~Lw~~Gt~~~ 82 (658)
T cd01676 4 TYYRTYSRPKEEGQN-ENWDQTVERVVEGTFELWERHLGNPLRWLNEKAEEEAEELRSLIFELKALPPGRGLWLGGTDYS 82 (658)
T ss_pred eEEEeccccCCCCCc-cChHHHHHHHHhcchhhchhhccccchhhhhhhhHHHHHHHHHHHhcccCCCccchhhcCchhh
Confidence 345788854 56644 9999999998877442 1 135678899999999999999999999975
Q ss_pred --C--CCCCccccccc----------------------------------------------------------------
Q 003561 212 --R--PQLSSCFLVCM---------------------------------------------------------------- 223 (811)
Q Consensus 212 --~--~~lsSCfl~~~---------------------------------------------------------------- 223 (811)
+ ..+.||..+.+
T Consensus 83 ~~~~~~~~~NC~f~~~~~~~~~f~~~~~llm~G~GvG~~~~~~~i~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 162 (658)
T cd01676 83 RQRRFASLNNCAFVSTEDVVYPFVFLMDLLMQGCGVGFDTAGSNISQIPRPLQEIKVQRVNRTEKGGIQNNVETYDPTQH 162 (658)
T ss_pred hcccccccccceeeccccchhhHHHHHHHHhcCCcCCeEecccchhhCCCcccccceeeccccccccccccceeeccCCc
Confidence 1 13556654332
Q ss_pred -----cCCCHHHHHHHHHHHHHHHH-hcCCcceeeceecCCCCcccCCCCccCCcccHHHHHHHH---------------
Q 003561 224 -----KDDSIEGIYETLKECAVISK-SAGGIGVSVHNIRATGSYIRGTNGTSNGIVPMLRVFNDT--------------- 282 (811)
Q Consensus 224 -----~~Ds~~~I~~~~~~~a~isk-~ggGvG~~~s~iR~~Gs~I~g~~g~ssG~vp~lk~~~~~--------------- 282 (811)
++||++||.+++..+..+.. ..-++++|||.|||+|++|+|++|+||||+||+++|+.+
T Consensus 163 ~~~~~v~Ds~egw~~~~~~l~~~~~~~~~~~~~d~S~iRP~G~~lkg~gG~asGp~~~~~~~~~~~~iL~~~~G~~L~~i 242 (658)
T cd01676 163 TWIIKVPDSREGWVKSVQLLLDLYFNPAQTLIFDYSDIRPAGERLKGFGGIASGPEPLKKLHKAIAAILNDRSGKPLTSV 242 (658)
T ss_pred eeEEEcCCCHHHHHHHHHHHHHhcccCCCceEEecccCCCCCCcccCCCCCCCCcHHHHHHHHHHHHHHhhhcccccchh
Confidence 36899999999988755543 344889999999999999999999999999999999986
Q ss_pred ---------HHHHhhCCCccccceEeeccCCcccHHHHHHhhhcCCcccccccccceecccCHHHHHHHHcCCceEEecC
Q 003561 283 ---------ARYVDQGGGKRKGAFAVYLEPWHADIFEFLNLKKNHGKEEHRARDLFYALWVPDLFMERVQTNGQWSLFCP 353 (811)
Q Consensus 283 ---------~~~v~QgG~~R~ga~~vyl~~wH~DI~~Fl~~K~~~g~e~~r~~~l~~sv~ipD~Fm~rv~~~~~W~Lf~P 353 (811)
+.+|.||| .||||.|. ++||||++||++|+..+...+ ..|.+..+
T Consensus 243 d~~di~n~~~~~v~~Gg-~RR~A~M~---~~HpDi~eFi~aK~~~~~~~n----------------------~~~~~~~n 296 (658)
T cd01676 243 DIVDLMNLIGVCVVSGN-VRRSAEIA---FGQPEDEDFADLKQYQWNPGR----------------------REHGWASN 296 (658)
T ss_pred HHHHHHhhhhcEEeecC-cccceecC---CCCccHHHHHHhcccCCcccc----------------------chhheecc
Confidence 55788998 89998874 899999999999986543321 12222222
Q ss_pred CCCCcchhhhhhHHHHHHHHHHhcCceeEEEeHHHHHHHHHHHHHhhCCceeEehhhhhhhcCC------CCCCceeeec
Q 003561 354 NEASGLADCWGAEFEKLYTHYEREGKAKKVVQAQNLWFEILTSQIETGTPYMLFKDTCNRKSNQ------QNLGTIKSSN 427 (811)
Q Consensus 354 ~~~~~L~~~yg~eF~~~Y~~~e~~~~~~~~v~Ar~L~~~I~~~~~etG~P~i~f~D~~Nr~~~~------~~~g~I~~sN 427 (811)
++...+++++|++|.+|++++|+||+|||+|+|++|+++|+ .+.|+|.+||
T Consensus 297 -----------------------~s~~~~~~~ar~~~~~I~~~~~~tGEPGi~f~D~~N~~~~~~~~~~~~~~g~I~~TN 353 (658)
T cd01676 297 -----------------------NSVVFESKPDRLEYSFACMLIRGNGEPGIAWLDNMKAYARMVLLTTPYHDLRAKGGN 353 (658)
T ss_pred -----------------------cchheeehhhHHHHHHHHHHHHHhCCCcEEEHHHHHhhCccccccccccCCeeEecc
Confidence 23345688999999999999999999999999999999975 2458899999
Q ss_pred CCccccccCCCCcceeEEecccccchhcccCCCCCCCCCccccccCCCCCccCCHHHHHHHHHHHHHHHHHHHhcCCCcH
Q 003561 428 LCTEIIEYTSPTETAVCNLASIALPRFVREKDVPVESHPSRIVGSRGSKNRFFDFEKLAEVTAIVTENLNKIIDVNYYPV 507 (811)
Q Consensus 428 lC~EI~~~~~~~e~~~CNL~SInL~~~v~~~~~~~~~~~~~~~g~~~~~~~~fD~~~L~~~v~~avr~LD~vId~~~~p~ 507 (811)
||+||+|++ +++|||+||||.+|+. ||++|+++++++|||||+||+ +.||+
T Consensus 354 PCgEi~L~~----~~~CNLgSINL~~~v~------------------------d~~~l~~~v~~avRflD~Vi~-~~~p~ 404 (658)
T cd01676 354 PCGEISLES----YELCNLVEVFPLKHEG------------------------DLEDLQETLYLAGRYAKTVTL-LPLHW 404 (658)
T ss_pred ccccccCCC----CCceechhccHHhhcc------------------------cHHHHHHHHHHHHHHHHHhhc-ccCch
Confidence 999999874 3589999999999973 678999999999999999998 56999
Q ss_pred HHHHHHhhccCCeeeecchHHHHHHHcCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCCCCCCccccCCCCc
Q 003561 508 ETARRSNLRHRPIGIGVQGLADTFILLGMAFESPEAQQLNKDIFETIYYHALKTSSEIAAKEGPYETYHNSPVSKGILQP 587 (811)
Q Consensus 508 ~~~~~~~~~~R~iGlGv~Glad~L~~~gi~y~S~ea~~l~~~i~e~i~~~a~~aS~eLAke~G~~~~f~~S~~~~G~l~~ 587 (811)
|+++++++++|+||||+|||||+|+++|++|+++++.++ ++.++..+.++|.++|+|+|.
T Consensus 405 ~~~~~~~~~~R~IGlGvmGlaD~L~~lgi~~~~~~~~~~----~~~~~~~~~~~s~ela~e~G~---------------- 464 (658)
T cd01676 405 EITNEIILRNRRIGVSMSGIADFIVRAGGDLTLHDLKRW----RNIGYEAVYQYDERLSKWLGI---------------- 464 (658)
T ss_pred HHHHHHHHhcccceeeeecHHHHHHHcCCCccHHHHHHH----HHHHHHHHHHHHHHHHHHhCC----------------
Confidence 999999999999999999999999999999988877654 555555666777889988773
Q ss_pred cccccCCCCcccHHHHHHHHHhcCccccceeccCCCCccccccCCCccccccccceeEEEcccCceEEeChHHHHHHHHc
Q 003561 588 DMWNVIPSDRWDWGVLRDMISKNGVRNSLLVAPMPTASTSQILGNNECFEPYTSNIYSRRVLSGEFVVVNKHLLHDLTEM 667 (811)
Q Consensus 588 d~~~~~~~~~~dW~~Lr~~i~~~G~RNs~l~AiaPT~stS~i~g~s~gieP~~s~~y~r~~~~g~~~~vn~~l~~~l~~~ 667 (811)
.||+++||||||||+|+|+|+|+||||+||++|+|+++.+ .|++|++.|++.
T Consensus 465 ------------------------~rn~~lTTIAPTGTiSliaG~SsGIEP~fA~~y~Rrv~~~----~~~pl~~~l~~~ 516 (658)
T cd01676 465 ------------------------PLSIKVTCVKPSGTISLLAGASPGMHYPLGKYLIRRIRFQ----KHDPLAPALIAA 516 (658)
T ss_pred ------------------------ccccceEEECCCchHHHhcCCCCCcChhHhHHHHhhhhcc----cCcHHHHHHHHc
Confidence 1688999999999999999999999999999999998865 588999999999
Q ss_pred CCCcHHHhhhhhccCCcccccCCCchHHHhhhhhhccCChHHHHHHHHHhcc-ccccccceeEeeCCC-CHHHHHHHHHH
Q 003561 668 GIWSPTIKNKIIYDDGSVQKIPEIPEELKMIYKTVWEIKQMTLVDMAVDRGC-YIDQSQSLNIHMDQP-NFKKVTSLHFR 745 (811)
Q Consensus 668 g~~~~~~~~~i~~~~Gsv~~i~~~p~~~k~~f~ta~ei~~~~~i~~~a~~Q~-~vDqs~S~~l~~~~~-~~~~l~~~~~~ 745 (811)
|++.++... .. .+.++++|++.+++|+||+||+|++||+|||++|+ |+||+||+|+++++. +.++|..+|.+
T Consensus 517 G~~~~~~~~----~~--~~~l~~iP~~~~~~f~Ta~dIs~~~hl~~qA~~Q~y~vD~avSkTIn~p~~~~~~dV~~~l~~ 590 (658)
T cd01676 517 GYHVEPDIY----DP--TSVLVEFPVKAGNADRTANTVSIVEQLSLLAFLQTYWADNQVSNTISFDPSPEGPALIQALQQ 590 (658)
T ss_pred CCCcHHHHh----cc--CCCcccCCHHHHhhcCCHHhCCHHHHHHHHHHhCcCCeeecccceEeeCCCCCHHHHHHHHHH
Confidence 999877432 23 35688899999999999999999999999999999 699999999999864 89999999999
Q ss_pred HHHcCCceEEEEecCcc---ccccccccccccccc
Q 003561 746 TWSRGLKTGMYYLRSRA---AADAIKFTVDTSVFK 777 (811)
Q Consensus 746 Awk~GlKt~~YY~r~~~---~~~~~~~~~~~~~~~ 777 (811)
+|. |||+++.|.|..+ .++++...++++.-.
T Consensus 591 ~~~-~~KG~t~l~~~d~~~~~~q~P~E~I~ke~ye 624 (658)
T cd01676 591 FQY-QYKSVSLLPRFDTTKNAAQMPFEPITKERYE 624 (658)
T ss_pred hhc-CCeEEEEeecCCcccCcccCCccccCHHHHH
Confidence 965 9999999975433 236777788877543
No 32
>TIGR02505 RTPR ribonucleoside-triphosphate reductase, adenosylcobalamin-dependent. This model represents a group of adenosylcobalamin(B12)-dependent ribonucleotide reductases (RNR) related to the characterized species from Lactococcus leichmannii. RNR's are responsible for the conversion of the ribose sugar of RNA into the deoxyribose sugar of DNA. This is the rate-limiting step of DNA biosynthesis. Thus model identifies NrdJ enzymes only in cyanobacteria, lactococcus and certain bacteriophage. A separate model (TIGR02504) identifies a larger group of divergent B12-dependent RNR's.
Probab=100.00 E-value=1.1e-70 Score=642.51 Aligned_cols=480 Identities=18% Similarity=0.210 Sum_probs=390.0
Q ss_pred ChhhHHHHHHhhccc-cCCcccCCHHHHHHHHHhHhcc---------------CCHHHHHHHHHHHhcCcEecccccccc
Q 003561 144 DYFGFKTLERSYLLK-VQGKVVERPQHMLMRVSIGIHK---------------DDIDSAIKTYHMMSQRWFTHASPTLFN 207 (811)
Q Consensus 144 ~y~g~~~l~~~Yl~k-~~g~~~E~pq~~~~RvA~~l~~---------------~~~~~~~~~y~~ls~~~~~~atP~l~n 207 (811)
.-.|..+++++|... .++..-|+..++..||-.+-.. ...+++.+.|+++.++++.|++++|.-
T Consensus 9 ~~~g~~vy~Rtysr~~~~~~r~E~W~eTv~Rvv~~~~~l~~~~~~~~~~~~~~~~~~e~~~l~~~i~~~k~lPsGR~LW~ 88 (713)
T TIGR02505 9 GKTALVTYKRTYARWLPEKGRSENWDETVERVVSGNRNLWPRLQDRPLLELQQSLTEEAERLYRLIYELKALPSGRNLWI 88 (713)
T ss_pred ccccceeEeecccccCCCCCCCCCchhheeeeecCccccchhhhccchhhhhhhhHHHHHHHHHHHHhcccCCCccchhh
Confidence 345556677888843 4555678888888886544211 113567889999999999999999999
Q ss_pred cCCC----CC-CCCccccccc-----------------------------------------------------------
Q 003561 208 AGTP----RP-QLSSCFLVCM----------------------------------------------------------- 223 (811)
Q Consensus 208 aGt~----~~-~lsSCfl~~~----------------------------------------------------------- 223 (811)
+||. .+ .+.||..+.+
T Consensus 89 gGt~~~~~~~~~~~NC~f~~~~~~~~F~~~~~llM~G~GVGf~~~~~~i~~lp~v~~~~~~~~~~~~~~~~~~~~~~~~~ 168 (713)
T TIGR02505 89 GGTDYQRRTEDSLFNCWFTAIRPQKPFSFLFDLLMKGCGVGFSVARSNISQIPRVDQEIKVQLVVDETSESYDASVEVGA 168 (713)
T ss_pred cCchhhhccchhhccceecccccccCHHHHHHHHhcCCcCCEEecccchhhCCCccccceeeeecccCCCChhhhhhhcc
Confidence 9974 22 3667765544
Q ss_pred -----------cCCCHHHHHHHHHHHHHHHHhcC------CcceeeceecCCCCcccCCCCccCCcccHHHHH-------
Q 003561 224 -----------KDDSIEGIYETLKECAVISKSAG------GIGVSVHNIRATGSYIRGTNGTSNGIVPMLRVF------- 279 (811)
Q Consensus 224 -----------~~Ds~~~I~~~~~~~a~isk~gg------GvG~~~s~iR~~Gs~I~g~~g~ssG~vp~lk~~------- 279 (811)
++||.|||.++++.+..++..+. .||+|||.|||+|++|+|++|.||||+||+++|
T Consensus 169 ~~~~~~~~~~~v~DSreGWv~s~~~ll~~~~~~~~~~~~~~v~~dfS~iRP~Ga~lkg~GG~ASGPvsl~~l~~~i~~iL 248 (713)
T TIGR02505 169 VSKNEDVQDVDLPDTREGWVLANALLIDLHFAQTNADRKQKLVLDLSDIRPAGAELKGFGGTASGPVPLAKMLTDVAEIL 248 (713)
T ss_pred cccCCCceEEEcCCcHHHHHHHHHHHHHHhcCccccccCCceeeeccccCCCCCcccCCCCCCCCcHHHHHHHHHHHHHH
Confidence 35999999999999877764433 469999999999999999999999999999998
Q ss_pred -----------------HHHHHHHhhCCCccccceEeeccCCcccHHHHHHhhhcCCcccccccccceecccCHHHHHHH
Q 003561 280 -----------------NDTARYVDQGGGKRKGAFAVYLEPWHADIFEFLNLKKNHGKEEHRARDLFYALWVPDLFMERV 342 (811)
Q Consensus 280 -----------------~~~~~~v~QgG~~R~ga~~vyl~~wH~DI~~Fl~~K~~~g~e~~r~~~l~~sv~ipD~Fm~rv 342 (811)
|.++..|.||| +||||.|..|+++||||++|+..|+..|. ..+++|+||.|+|.||..
T Consensus 249 ~~~~G~~Lt~id~~di~~~~~~~Vv~Gg-vRRgA~M~~l~~dhpdi~~fi~aK~~~~~---~~~~~N~SV~v~d~f~~~- 323 (713)
T TIGR02505 249 SNKAGGRLTAVDAADICNLIGKAVVAGN-VRRSAEMALFSNDDPEFESFKQAKEKLMH---HRWASNNSVAVDSAFSGL- 323 (713)
T ss_pred hhhccccccchhHHHHHHHHhheeeecC-ccccceeeccCCCChHHHHHHhccccccc---ccccccceeEechhHHHH-
Confidence 56788899998 89999999999999999999999986542 236899999999999821
Q ss_pred HcCCceEEecCCCCCcchhhhhhHHHHHHHHHHhcCceeEEEeHHHHHHHHHHHHHhhCCceeEehhh-------hhhhc
Q 003561 343 QTNGQWSLFCPNEASGLADCWGAEFEKLYTHYEREGKAKKVVQAQNLWFEILTSQIETGTPYMLFKDT-------CNRKS 415 (811)
Q Consensus 343 ~~~~~W~Lf~P~~~~~L~~~yg~eF~~~Y~~~e~~~~~~~~v~Ar~L~~~I~~~~~etG~P~i~f~D~-------~Nr~~ 415 (811)
.++...++++|+|+++|.|+ +|+.+
T Consensus 324 ------------------------------------------------~~~~~~~~~~gePg~~fid~~~~~~~~in~~~ 355 (713)
T TIGR02505 324 ------------------------------------------------ARSAADILENGEPGQVNLDLSKSEGRIVNGRY 355 (713)
T ss_pred ------------------------------------------------hhhhccccccCCcchhhHhhhhcccccccccc
Confidence 12223456899999999999 57777
Q ss_pred CCCCCCceeeecCCccccccCCCCcceeEEecccccchhcccCCCCCCCCCccccccCCCCCccCCHHHHHHHHHHHHHH
Q 003561 416 NQQNLGTIKSSNLCTEIIEYTSPTETAVCNLASIALPRFVREKDVPVESHPSRIVGSRGSKNRFFDFEKLAEVTAIVTEN 495 (811)
Q Consensus 416 ~~~~~g~I~~sNlC~EI~~~~~~~e~~~CNL~SInL~~~v~~~~~~~~~~~~~~~g~~~~~~~~fD~~~L~~~v~~avr~ 495 (811)
+..+.|.|.+||||+||++++ +++|||+||||.+|+.+ -++|++++++++|+
T Consensus 356 ~~~~~~~I~~tNPCgEi~L~~----~~~CNL~sINL~~~~~~------------------------~~~l~~~~~~avr~ 407 (713)
T TIGR02505 356 QAGEDGDVEGTNPCGEILLAN----GEPCNLFEVNLLAFEED------------------------GWGLQRAFALAARY 407 (713)
T ss_pred ccccCCceeecCCCccccCCC----CCceechhccHHhhccc------------------------HHHHHHHHHHHHHH
Confidence 888889999999999999875 35899999999999742 16899999999999
Q ss_pred HHHHHhcCCCcHHHHHHHhhccCCeeeecchHHHHHHHcCC-------------CCCCHHHHHHHHHHHHHHHHHHHHHH
Q 003561 496 LNKIIDVNYYPVETARRSNLRHRPIGIGVQGLADTFILLGM-------------AFESPEAQQLNKDIFETIYYHALKTS 562 (811)
Q Consensus 496 LD~vId~~~~p~~~~~~~~~~~R~iGlGv~Glad~L~~~gi-------------~y~S~ea~~l~~~i~e~i~~~a~~aS 562 (811)
||+||+ +.||+|+++++++++|+||||+|||||+|+++|+ +|+|.++...+.++++.++..+.++|
T Consensus 408 Ld~vi~-~~~pl~~~~~~~~~~R~IGlGv~Glad~L~~~gi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~a 486 (713)
T TIGR02505 408 AKRVTF-SPYDDEISREIIQKNRRIGVSMSGIQDFLLLRGGTGFKDDFDPETHEAIKVRVYDKRAAKFLDRMYKIVVKAA 486 (713)
T ss_pred HHHHHh-ccCChHHHHHHHHhcCCceeehhhHHHHHHHcCCcccccccccccccccccccccHHHHHHHHHHHHHHHHHH
Confidence 999995 5799999999999999999999999999999998 78777777888888889999999999
Q ss_pred HHHHHHhCCCCCCCCCccccCCCCccccccCCCCcccHHHHHHHHHhcCccccceeccCCCCccccccCCCccccccccc
Q 003561 563 SEIAAKEGPYETYHNSPVSKGILQPDMWNVIPSDRWDWGVLRDMISKNGVRNSLLVAPMPTASTSQILGNNECFEPYTSN 642 (811)
Q Consensus 563 ~eLAke~G~~~~f~~S~~~~G~l~~d~~~~~~~~~~dW~~Lr~~i~~~G~RNs~l~AiaPT~stS~i~g~s~gieP~~s~ 642 (811)
.++|+|+|. .||+.+|+||||||+|+|+|+|+||||+||+
T Consensus 487 ~~~s~elg~----------------------------------------~r~~~~TTIaPTGTiS~laG~S~GIeP~~A~ 526 (713)
T TIGR02505 487 QDYSKELGC----------------------------------------PEPIKHTTVKPSGTISKLAGASEGIHPPYGA 526 (713)
T ss_pred HHHHHHhCC----------------------------------------CCccceeeeCCccchHHhcCCCCccCcchhh
Confidence 999998874 2788999999999999999999999999999
Q ss_pred eeEEEcccCceEEeChHHHHHHHHcCCCcHHHhhhhhccCCccc----ccCCCchHH--H--hhhhhhc--cCChHHHHH
Q 003561 643 IYSRRVLSGEFVVVNKHLLHDLTEMGIWSPTIKNKIIYDDGSVQ----KIPEIPEEL--K--MIYKTVW--EIKQMTLVD 712 (811)
Q Consensus 643 ~y~r~~~~g~~~~vn~~l~~~l~~~g~~~~~~~~~i~~~~Gsv~----~i~~~p~~~--k--~~f~ta~--ei~~~~~i~ 712 (811)
+|+|++. ..+|++|++.|++.|++.+.....- ..+|... .+-++|... . .-..+|. ++++.+|++
T Consensus 527 ~y~Rri~----~~~ndpl~~~l~~~Gy~~~p~~~~~-~~~~~~~~~~~~~ve~p~~~~~~~~~~~~~a~~~diS~~~ql~ 601 (713)
T TIGR02505 527 YLIRRIT----FSKSDPLAPALKACGYTVEADQYDK-NEQGRLPPCKTTLVEFPIKAVGADNPNIAEVGINTVSAAAQFA 601 (713)
T ss_pred heeeeee----eecCcHHHHHHHHcCCCCCcccccc-ccccccccccceeEEeeecccccCCCCCcccccccCCHHHHHH
Confidence 9999984 3589999999999999876321110 0011100 011122211 0 0122455 999999999
Q ss_pred HHHHhcc-ccccccceeEeeCCCCHHHHHHHHHHHHHcC
Q 003561 713 MAVDRGC-YIDQSQSLNIHMDQPNFKKVTSLHFRTWSRG 750 (811)
Q Consensus 713 ~~a~~Q~-~vDqs~S~~l~~~~~~~~~l~~~~~~Awk~G 750 (811)
+||..|+ |+|+++|+|+++++...++|..++.++|+.-
T Consensus 602 ~qa~~Q~~~~DnavS~Tin~~~~e~e~v~~~~~~~~~~~ 640 (713)
T TIGR02505 602 FYAFLQTYWSDNNVSCTITFDPSEGEQVESALRQYRDNS 640 (713)
T ss_pred HHHHHhHhhhhccCceeEecChHHHHHHHHHHHHHHHhh
Confidence 9999999 8999999999999867999999999999844
No 33
>cd00576 RNR_PFL Ribonucleotide reductase and Pyruvate formate lyase. Ribonucleotide reductase (RNR) and pyruvate formate lyase (PFL) are believed to have diverged from a common ancestor. They have a structurally similar ten-stranded alpha-beta barrel domain that hosts the active site, and are radical enzymes. RNRs are found in all organisms and provide the only mechanism by which nucleotides are converted to deoxynucleotides. RNRs are separated into three classes based on their metallocofactor usage. Class I RNRs use a diiron-tyrosyl radical while Class II RNRs use coenzyme B12 (adenosylcobalamin, AdoCbl). Class III RNRs use an FeS cluster and S-adenosylmethionine to generate a glycyl radical. PFL, an essential enzyme in anaerobic bacteria, catalyzes the conversion of pyruvate and CoA to acteylCoA and formate in a mechanism that uses a glycyl radical.
Probab=100.00 E-value=1e-48 Score=441.09 Aligned_cols=372 Identities=23% Similarity=0.257 Sum_probs=332.3
Q ss_pred HHHHHHHHhcCcEecccccccccCCCCCCCCccccccccCCCH---------------HHHHHHHHHHHHHHHhc--CCc
Q 003561 186 AIKTYHMMSQRWFTHASPTLFNAGTPRPQLSSCFLVCMKDDSI---------------EGIYETLKECAVISKSA--GGI 248 (811)
Q Consensus 186 ~~~~y~~ls~~~~~~atP~l~naGt~~~~lsSCfl~~~~~Ds~---------------~~I~~~~~~~a~isk~g--gGv 248 (811)
+++||++++++++.+++|+ .+++|||+.++ +|++ ++|...+...+.+++.+ ||+
T Consensus 1 ~~~~~~~~~~g~~~~~~~~--------~~~~~C~~~~~-~d~l~~g~~~~~~p~~~~~eai~~~~~~~~~~~~~~~~ggv 71 (401)
T cd00576 1 AERIYEAVKSGVITVGRPD--------LPFTGCVLVDY-GDSLDPGIKGVNETAKSINEAIQKTYQIIALAASNQNGGGV 71 (401)
T ss_pred CHHHHHHHHcCccccCCcc--------cccCceEEEEh-HHHHHHhhhhcCCCccCHHHHHHHHHHHHHHHHHhccCCcc
Confidence 3689999999999999997 47899999997 8999 89999888888877777 999
Q ss_pred ceee--ceecCCCCcccC-CCCccCCcccHHHHHHHHHHHHhhCCCccccceEeeccCCc-----ccHHHHHHhhhcCCc
Q 003561 249 GVSV--HNIRATGSYIRG-TNGTSNGIVPMLRVFNDTARYVDQGGGKRKGAFAVYLEPWH-----ADIFEFLNLKKNHGK 320 (811)
Q Consensus 249 G~~~--s~iR~~Gs~I~g-~~g~ssG~vp~lk~~~~~~~~v~QgG~~R~ga~~vyl~~wH-----~DI~~Fl~~K~~~g~ 320 (811)
|++. +.+||.|+++++ .++++.|++++++.|+..+..+.|+| .|+|+.+++++.|| +|+++||++|.+.+.
T Consensus 72 ~~~~~d~~l~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-g~~~~~~~~lg~~~~~~~~~~~~~~l~~~~~~~~ 150 (401)
T cd00576 72 SFARASSILSPYGSRDYAKGSGTETDAVEAADAFNLALKEVGQGN-GRTGAATGFIGGVHKGKGDKISQEFLNLALANGG 150 (401)
T ss_pred CCchhhhhhhHHHHhhhhcCCCChHHHHHHHHHHHHHHhhhhhcC-CCCceEEEEECCCCccccCHHHHHHHHHHHhcCC
Confidence 9999 999999999987 57889999999999999999999998 69999999999999 999999999998776
Q ss_pred ccccccccceecccCHHHHHHHHcCCceEEecCCCCCcchhhhhhHHHHHHHHHHhcCceeEEEeHHHHHHHHHHHHHhh
Q 003561 321 EEHRARDLFYALWVPDLFMERVQTNGQWSLFCPNEASGLADCWGAEFEKLYTHYEREGKAKKVVQAQNLWFEILTSQIET 400 (811)
Q Consensus 321 e~~r~~~l~~sv~ipD~Fm~rv~~~~~W~Lf~P~~~~~L~~~yg~eF~~~Y~~~e~~~~~~~~v~Ar~L~~~I~~~~~et 400 (811)
+..+....+++|.+++.|+++ .++|+++|++++++++++
T Consensus 151 ~~~~~~~p~~sv~~~~~~~~~-----------------------------------------~~~~~~l~~~~~~~~~~~ 189 (401)
T cd00576 151 EGIPLNFPNLSVRVSSDKPGI-----------------------------------------LVKAVELKQLIAEEARKT 189 (401)
T ss_pred CCccCCCCcEEEEeecCCCCc-----------------------------------------cccHHHHHHHHHHHHHHh
Confidence 666677788888887766532 278999999999999999
Q ss_pred CCceeEehhhhhhhcCCCCCCceeeecCCccccccCCCCcceeEEecccccchhcccCCCCCCCCCccccccCCCCCccC
Q 003561 401 GTPYMLFKDTCNRKSNQQNLGTIKSSNLCTEIIEYTSPTETAVCNLASIALPRFVREKDVPVESHPSRIVGSRGSKNRFF 480 (811)
Q Consensus 401 G~P~i~f~D~~Nr~~~~~~~g~I~~sNlC~EI~~~~~~~e~~~CNL~SInL~~~v~~~~~~~~~~~~~~~g~~~~~~~~f 480 (811)
|.||++|. .+|||+||||+++++.. ..+...+
T Consensus 190 g~P~~~n~---------------------------------~~~~l~siNL~~~~~~~---------------~~~~~~~ 221 (401)
T cd00576 190 GSPGIFND---------------------------------ELCNLVSLNLARIMEKA---------------INGSMDV 221 (401)
T ss_pred CCCCEEEc---------------------------------cccccHHHHHHHHHHHH---------------hcccHHH
Confidence 99999987 36999999999998741 0112246
Q ss_pred CHHHHHHHHHHHHHHHHHHHhcCCCcHHHHHHHhhccCCeeeecchHHHHHHHcCCCCC-CHHHHHHHHHHHHHHHHHHH
Q 003561 481 DFEKLAEVTAIVTENLNKIIDVNYYPVETARRSNLRHRPIGIGVQGLADTFILLGMAFE-SPEAQQLNKDIFETIYYHAL 559 (811)
Q Consensus 481 D~~~L~~~v~~avr~LD~vId~~~~p~~~~~~~~~~~R~iGlGv~Glad~L~~~gi~y~-S~ea~~l~~~i~e~i~~~a~ 559 (811)
+++.|++++++++|+||++++...+++|++++...++|++|||++|||+++.+++++|. |++|.+++++|++.|++.+.
T Consensus 222 ~~~~l~~~~~~~~r~l~~~~~~~~~~~~~~~~~~~~~r~~giG~~Gla~~~~~l~~~~~~~~~a~~~~~~i~~~~~~~~~ 301 (401)
T cd00576 222 VLEELEELAFLAVRALDCVIDSHDERIPTIELGGDERRTVGLGIAGVADLLIKLGLEKVGDPEADDLAAELVDQLKKHLV 301 (401)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHccCCCHHHHhCccCCccccccHhHHHHHHHHhCCcccCCHHHHHHHHHHHHHHHHHHH
Confidence 78999999999999999999999999999999899999999999999999999999999 99999999999999999999
Q ss_pred HHHHHHHHHhCCCCCCCCCccccCCCCccccccCCCCcccHHHHHHHHHhcCccccceeccCCCCccccccCCCcccccc
Q 003561 560 KTSSEIAAKEGPYETYHNSPVSKGILQPDMWNVIPSDRWDWGVLRDMISKNGVRNSLLVAPMPTASTSQILGNNECFEPY 639 (811)
Q Consensus 560 ~aS~eLAke~G~~~~f~~S~~~~G~l~~d~~~~~~~~~~dW~~Lr~~i~~~G~RNs~l~AiaPT~stS~i~g~s~gieP~ 639 (811)
++|.+ .||+.+++++|++|+|.+.+.|+||+|.
T Consensus 302 ~~s~~-----------------------------------------------~~~~~~~~~~P~~s~~~~~~~s~gi~p~ 334 (401)
T cd00576 302 KATNE-----------------------------------------------RGFNFLLGLSPSESNSSGAPATNGVSPS 334 (401)
T ss_pred Hhhhh-----------------------------------------------cCCccccceeecccccCCCCCCCCcCCc
Confidence 88764 4788999999999999999999999999
Q ss_pred ccceeEEEcccCceEEeChHHHHHHHHcCCCcHHHhhhhhccCCcccccCCCchHHHhhhhhhccCChHHHHHHHHHhcc
Q 003561 640 TSNIYSRRVLSGEFVVVNKHLLHDLTEMGIWSPTIKNKIIYDDGSVQKIPEIPEELKMIYKTVWEIKQMTLVDMAVDRGC 719 (811)
Q Consensus 640 ~s~~y~r~~~~g~~~~vn~~l~~~l~~~g~~~~~~~~~i~~~~Gsv~~i~~~p~~~k~~f~ta~ei~~~~~i~~~a~~Q~ 719 (811)
++++|. +++.+++|.++|+++|.+|+
T Consensus 335 ~~~~~~------------------------------------------------------~~~~~~~~~~~i~~~a~~~~ 360 (401)
T cd00576 335 RGXIAI------------------------------------------------------VLNGDIGPEESLASVAILQF 360 (401)
T ss_pred cccccc------------------------------------------------------cccccCCHHHHHHHhhcCcc
Confidence 998765 23447889999999999999
Q ss_pred ccccccceeEeeCCC-C-HHHHHHHHHHHHHcCCceEEEE
Q 003561 720 YIDQSQSLNIHMDQP-N-FKKVTSLHFRTWSRGLKTGMYY 757 (811)
Q Consensus 720 ~vDqs~S~~l~~~~~-~-~~~l~~~~~~Awk~GlKt~~YY 757 (811)
|+||++|+|+++++. . .++|.+++..||+.|+|++.+|
T Consensus 361 ~~~~g~s~~i~~~~~~~~~~~l~~l~~~~~~~g~~~i~~n 400 (401)
T cd00576 361 YADNGISDTITIPDSATNLDQLLAVIDGAAAIKTTHVRVN 400 (401)
T ss_pred cccCCeeeeeecCCccccHHHHHHHHHHHHHcCCCeEEec
Confidence 999999999999864 3 8899999999999999997766
No 34
>PF00317 Ribonuc_red_lgN: Ribonucleotide reductase, all-alpha domain; InterPro: IPR013509 Ribonucleotide reductase (1.17.4.1 from EC) [, ] catalyzes the reductive synthesis of deoxyribonucleotides from their corresponding ribonucleotides. It provides the precursors necessary for DNA synthesis. RNRs divide into three classes on the basis of their metallocofactor usage. Class I RNRs, found in eukaryotes, bacteria, bacteriophage and viruses, use a diiron-tyrosyl radical, Class II RNRs, found in bacteria, bacteriophage, algae and archaea, use coenzyme B12 (adenosylcobalamin, AdoCbl). Class III RNRs, found in anaerobic bacteria and bacteriophage, use an FeS cluster and S-adenosylmethionine to generate a glycyl radical. Many organisms have more than one class of RNR present in their genomes. Ribonucleotide reductase is an oligomeric enzyme composed of a large subunit (700 to 1000 residues) and a small subunit (300 to 400 residues) - class II RNRs are less complex, using the small molecule B12 in place of the small chain []. The reduction of ribonucleotides to deoxyribonucleotides involves the transfer of free radicals, the function of each metallocofactor is to generate an active site thiyl radical. This thiyl radical then initiates the nucleotide reduction process by hydrogen atom abstraction from the ribonucleotide []. The radical-based reaction involves five cysteines: two of these are located at adjacent anti-parallel strands in a new type of ten-stranded alpha/beta-barrel; two others reside at the carboxyl end in a flexible arm; and the fifth, in a loop in the centre of the barrel, is positioned to initiate the radical reaction []. There are several regions of similarity in the sequence of the large chain of prokaryotes, eukaryotes and viruses spread across 3 domains: an N-terminal domain common to the mammalian and bacterial enzymes; a C-terminal domain common to the mammalian and viral ribonucleotide reductases; and a central domain common to all three [].; GO: 0004748 ribonucleoside-diphosphate reductase activity, 0005524 ATP binding, 0006260 DNA replication, 0055114 oxidation-reduction process; PDB: 1PEM_A 2BQ1_E 1PEU_A 1PEQ_A 1PEO_A 1XJN_A 1XJK_A 3O0O_B 1XJF_A 3O0Q_A ....
Probab=99.74 E-value=2.3e-18 Score=152.02 Aligned_cols=72 Identities=43% Similarity=0.624 Sum_probs=62.4
Q ss_pred CCChhhHHHHHHhhccc-cCCcccCCHHHHHHHHHhHhcc---------CCHHHHHHHHHHHhcCcEecccccccccCCC
Q 003561 142 DYDYFGFKTLERSYLLK-VQGKVVERPQHMLMRVSIGIHK---------DDIDSAIKTYHMMSQRWFTHASPTLFNAGTP 211 (811)
Q Consensus 142 ~~~y~g~~~l~~~Yl~k-~~g~~~E~pq~~~~RvA~~l~~---------~~~~~~~~~y~~ls~~~~~~atP~l~naGt~ 211 (811)
.|+|+|+++|+++||+| .+|+++|+||++|||||++++. .+.+++++||++|++++|+||||||+||||+
T Consensus 2 ~~~~~a~~~l~~rYl~k~~~g~~~Etpq~~~~RVA~~la~~e~~y~~~~~~~~~~~~fy~~l~~~~f~patP~l~naGt~ 81 (83)
T PF00317_consen 2 LLSYNAAKVLYDRYLLKDEDGKVIETPQEMFMRVAMALASAEPKYDDAEDRMEWAEEFYDLLSNQKFIPATPTLSNAGTK 81 (83)
T ss_dssp GSSHHHHHHHHHHTS-BETTSCB--SHHHHHHHHHHHHHTCCGG-THCCTHHHHHHHHHHHHHTTSEEE-HHHHHHTTSS
T ss_pred CCCHHHHHHHHHhhCccCCCcCEeeCHHHHHHHHHHHHHHHcccccccCCHHHHHHHHHHHHHcCCeecCCHHHhcCCCC
Confidence 58999999999999999 4688999999999999999997 4578899999999999999999999999998
Q ss_pred CC
Q 003561 212 RP 213 (811)
Q Consensus 212 ~~ 213 (811)
+|
T Consensus 82 ~g 83 (83)
T PF00317_consen 82 RG 83 (83)
T ss_dssp S-
T ss_pred CC
Confidence 75
No 35
>PF03477 ATP-cone: ATP cone domain; InterPro: IPR005144 The ATP-cone is an evolutionarily mobile, ATP-binding regulatory domain which is found in a variety of proteins including ribonucleotide reductases, phosphoglycerate kinases and transcriptional regulators []. In ribonucleotide reductase protein R1 (P28903 from SWISSPROT) from Escherichia coli this domain is located at the N terminus, and is composed mostly of helices []. It forms part of the allosteric effector region and contains the general allosteric activity site in a cleft located at the tip of the N-terminal region []. This site binds either ATP (activating) or dATP (inhibitory), with the base bound in a hydrophobic pocket and the phosphates bound to basic residues. Substrate binding to this site is thought to affect enzyme activity by altering the relative positions of the two subunits of ribonucleotide reductase.; PDB: 2XO4_A 1RLR_A 7R1R_B 5R1R_A 2XO5_B 2XAW_A 2R1R_C 2XAY_B 2X0X_C 2XAZ_A ....
Probab=99.33 E-value=4.7e-12 Score=113.37 Aligned_cols=85 Identities=22% Similarity=0.326 Sum_probs=73.0
Q ss_pred CeEEecCCceeecChHHHHHHHHHHHc-cCCCCCCCHHHHHHHHHhhcCC----CCCHHHHHHHHHHHHHhhccCCCChH
Q 003561 1 MYVVKRDGRQEAVHFDKITARLKKLSY-GLSTEHCDPVLVSQKVCAGVYK----GVTTSQLDELAAETAAAMTTNHPDYA 75 (811)
Q Consensus 1 ~~V~KrdG~~e~~~~~ki~~~i~~~~~-~l~~~~v~~~~i~~~~~~~l~~----gitt~ei~~~~~~~a~~~~~~~p~y~ 75 (811)
|+|+||||+.||||.+||.++|.+||. +...+..++.+|+.+|...|++ +|||+||++++++++. .+|.|.
T Consensus 1 i~ViKrdG~~e~F~~~KI~~~i~~a~~~~~~~~~~~~~~i~~~V~~~l~~~~~~~is~~eI~~~v~~~L~----~~~~~~ 76 (90)
T PF03477_consen 1 IKVIKRDGRVEPFDREKIVRAIEKACEASRELSEEDAEEIASEVENKLYDSGKEEISTEEIQDIVENALM----EEGFYD 76 (90)
T ss_dssp -EEEESSSSEEES-HHHHHHHHHTTCTTTSTTTST-HHHHHHHHHTC-ST----TEEHHHHHHHHHHHHH----TSTTHH
T ss_pred CEEEeCCCcEeeecHHHHHHHHHHHHHhcccccHHHHHHHHHHHHHHHHhccCCCeeHHHHHHHHHHHHH----cCChHH
Confidence 799999999999999999999999993 3333457889999999999999 9999999999999985 899999
Q ss_pred HHHHHHHHHHHHHH
Q 003561 76 SLAARIAVSNLHKN 89 (811)
Q Consensus 76 ~lA~rl~~~~l~k~ 89 (811)
.+++++...++|||
T Consensus 77 ~a~~yi~yr~~r~e 90 (90)
T PF03477_consen 77 VARAYILYRNIRKE 90 (90)
T ss_dssp HHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHcC
Confidence 99999998888875
No 36
>PRK08270 anaerobic ribonucleoside triphosphate reductase; Provisional
Probab=99.13 E-value=7.6e-08 Score=114.75 Aligned_cols=247 Identities=14% Similarity=0.256 Sum_probs=142.4
Q ss_pred HHHHHHHHHhhCCceeEehhhhhhhcCCCCCCceeeecCCcccccc------------CCCCcceeEEecccccchhccc
Q 003561 390 WFEILTSQIETGTPYMLFKDTCNRKSNQQNLGTIKSSNLCTEIIEY------------TSPTETAVCNLASIALPRFVRE 457 (811)
Q Consensus 390 ~~~I~~~~~etG~P~i~f~D~~Nr~~~~~~~g~I~~sNlC~EI~~~------------~~~~e~~~CNL~SInL~~~v~~ 457 (811)
++.+.+...+.|.||+.+-.+... . .|.+. --|+-..+- ..+.-++++.--||||++.--.
T Consensus 345 ~d~~~e~~ak~g~p~f~n~~~~~~-~----~~~~~--~MgCR~~l~~~~~~~~~~g~~g~~~~~GnigvvTiNLPRia~~ 417 (656)
T PRK08270 345 ADLLFEMTAKYGLPYFQNFINSDL-K----PEDVR--SMCCRLQLDLRELRKRGGGLFGSAELTGSIGVVTINLPRLGYL 417 (656)
T ss_pred HHHHHHHHHhhCCccccccccccc-C----CCCcc--ccCCCCccchhhhhhhcCCcccCCCccceeeeEeccHHHHHHH
Confidence 456667788899999985221110 1 11111 123322111 0111234444558999998643
Q ss_pred CCCCCCCCCccccccCCCCCccCCHHHHHHHHHHHHHH-------HHHHHhcCCCcHHHHHHHhhccCCeeeecchHHHH
Q 003561 458 KDVPVESHPSRIVGSRGSKNRFFDFEKLAEVTAIVTEN-------LNKIIDVNYYPVETARRSNLRHRPIGIGVQGLADT 530 (811)
Q Consensus 458 ~~~~~~~~~~~~~g~~~~~~~~fD~~~L~~~v~~avr~-------LD~vId~~~~p~~~~~~~~~~~R~iGlGv~Glad~ 530 (811)
. .+...| |+.|.+.+.++... |..++....||.-.......++...-||+.||+++
T Consensus 418 a----------------~d~~~F-~~~L~~~l~la~~~L~~r~~~l~~~~~~~l~p~~~~~l~~~~~~~~TIG~iGl~E~ 480 (656)
T PRK08270 418 S----------------KDEEEF-FARLDELMDLAKDSLEIKRKVIERLTDKGLYPYTKRYLGTLRNHFSTIGLNGMNEA 480 (656)
T ss_pred c----------------CCHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHhcccChhHHHHHHHhcCCeeeeehhhHHHH
Confidence 1 000111 45566666666544 34445556788644332223444446899999999
Q ss_pred HH-HcCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCCCCCCccccCCCCccccccCCCCcccHHHHHHHHHh
Q 003561 531 FI-LLGMAFESPEAQQLNKDIFETIYYHALKTSSEIAAKEGPYETYHNSPVSKGILQPDMWNVIPSDRWDWGVLRDMISK 609 (811)
Q Consensus 531 L~-~~gi~y~S~ea~~l~~~i~e~i~~~a~~aS~eLAke~G~~~~f~~S~~~~G~l~~d~~~~~~~~~~dW~~Lr~~i~~ 609 (811)
+. ..|...+++||.+|+.+|.++|...+-+.+ +|.|--=..+.+|. ...--.-.|.|-++
T Consensus 481 ~~~~~G~~~~~~e~~~f~~~vl~~m~~~~~~~~----~e~g~~~~l~~TPA---------------Es~~~rfak~D~~~ 541 (656)
T PRK08270 481 CLNFLGKDITTEEGRAFALRVLDHMRERLVEFQ----EETGNLYNLEATPA---------------EGTTYRLAKEDKKR 541 (656)
T ss_pred HHHHhCCCCCCHHHHHHHHHHHHHHHHHHHHHH----HHHCCceEEEECcc---------------chHHHHHHHHHHHH
Confidence 86 789888999999999999999998877665 44553111222221 00011222444556
Q ss_pred cCccccceeccCCCCccccccCCCccccccccceeEEEcccCceEEeChHHHHHHHHcCCCcHHHhhhhhccCCcccccC
Q 003561 610 NGVRNSLLVAPMPTASTSQILGNNECFEPYTSNIYSRRVLSGEFVVVNKHLLHDLTEMGIWSPTIKNKIIYDDGSVQKIP 689 (811)
Q Consensus 610 ~G~RNs~l~AiaPT~stS~i~g~s~gieP~~s~~y~r~~~~g~~~~vn~~l~~~l~~~g~~~~~~~~~i~~~~Gsv~~i~ 689 (811)
+|..- +.|.+.. |++.|-|.
T Consensus 542 fg~i~--------------~~g~~d~--~YYTNS~h-------------------------------------------- 561 (656)
T PRK08270 542 YPDII--------------TAGTDEE--PYYTNSTQ-------------------------------------------- 561 (656)
T ss_pred cCCcc--------------cCCCCCC--CcccCCcc--------------------------------------------
Confidence 77311 2233221 44443221
Q ss_pred CCchHHHhhhhhhccCChHHHHHHHHHhccccccccceeEeeCC--CCHHHHHHHHHHHHH
Q 003561 690 EIPEELKMIYKTVWEIKQMTLVDMAVDRGCYIDQSQSLNIHMDQ--PNFKKVTSLHFRTWS 748 (811)
Q Consensus 690 ~~p~~~k~~f~ta~ei~~~~~i~~~a~~Q~~vDqs~S~~l~~~~--~~~~~l~~~~~~Awk 748 (811)
+| -..++++-+-|+..+.+|++.+-+--.-+++++ ++.+-+.++..++.+
T Consensus 562 -~~--------v~~~~~~feki~~e~~~~~~~~GG~I~hv~l~e~~~n~~a~~~lv~~~~~ 613 (656)
T PRK08270 562 -LP--------VGYTDDPFEALELQDELQTKYTGGTVFHLYLGEAISDAEACKKLVKKALE 613 (656)
T ss_pred -cC--------CCCCCCHHHHHhhhccCcceecceEEEEEECCCCCCCHHHHHHHHHHHHH
Confidence 11 123467777899999999999988888888886 467888888887765
No 37
>PRK09263 anaerobic ribonucleoside triphosphate reductase; Provisional
Probab=99.09 E-value=4.9e-07 Score=108.85 Aligned_cols=160 Identities=21% Similarity=0.250 Sum_probs=98.7
Q ss_pred HHHHHHHHHHHHHhhCCceeEehhhhhhhcCCCCCCceeeecCCcc-ccc-cC----CCCcceeEEec--ccccchhccc
Q 003561 386 AQNLWFEILTSQIETGTPYMLFKDTCNRKSNQQNLGTIKSSNLCTE-IIE-YT----SPTETAVCNLA--SIALPRFVRE 457 (811)
Q Consensus 386 Ar~L~~~I~~~~~etG~P~i~f~D~~Nr~~~~~~~g~I~~sNlC~E-I~~-~~----~~~e~~~CNL~--SInL~~~v~~ 457 (811)
-.+||+..+++..+.+.|++++.|.+-.. .|.+.++ -|+- .+. .. ....++.+||+ ||||++.--.
T Consensus 347 ~~~l~~~a~~~~~k~~~p~f~~~~~~~~~-----~g~~~~~-MgCR~~l~~~~~~~g~~~~~Gr~nigvvTiNLPRia~~ 420 (711)
T PRK09263 347 NYDIKQLALECATKRMYPDILNYDKIVEL-----TGSFKTP-MGCRSFLQGWKDENGEEVHDGRNNLGVVTLNLPRIALE 420 (711)
T ss_pred hHHHHHHHHHHhccccCCceecccchhhc-----CCCeeeC-CCCCCcCcchhccCCCccccccceeeEEeccHHHHHHH
Confidence 46888888999999999999998854221 1333322 2222 110 00 11124556666 7999998532
Q ss_pred CCCCCCCCCccccccCCCCCccCCHHHHHHHHHHHHHHHHHHH------hcCCCcHHHHH--------------HHhhcc
Q 003561 458 KDVPVESHPSRIVGSRGSKNRFFDFEKLAEVTAIVTENLNKII------DVNYYPVETAR--------------RSNLRH 517 (811)
Q Consensus 458 ~~~~~~~~~~~~~g~~~~~~~~fD~~~L~~~v~~avr~LD~vI------d~~~~p~~~~~--------------~~~~~~ 517 (811)
. .++...| |+.|.+.+.++.+.|..=. ....+|+-... ..-+..
T Consensus 421 ~---------------~~d~~~F-~~~Ld~~l~la~~~L~~r~~~~~~~~~~~~P~l~~~g~~~~~l~~~~~~~~~~~~~ 484 (711)
T PRK09263 421 A---------------KGDEDKF-WEILDERLELAKKALMTRIERLKGAKPRVAPILYMYGAFGVRLKADDDVDELFKNG 484 (711)
T ss_pred h---------------CCCHHHH-HHHHHHHHHHHHHHHHHHHHHHHhcccccCcHHHHhccccccCCCCcchHHHhcCC
Confidence 1 0111122 5667777777766553322 23456753211 011111
Q ss_pred C-CeeeecchHHHHHH-HcCCCCC-CHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCC
Q 003561 518 R-PIGIGVQGLADTFI-LLGMAFE-SPEAQQLNKDIFETIYYHALKTSSEIAAKEGP 571 (811)
Q Consensus 518 R-~iGlGv~Glad~L~-~~gi~y~-S~ea~~l~~~i~e~i~~~a~~aS~eLAke~G~ 571 (811)
| ++-||+.||++++. ..|-.+. ++||.+|+.+|.++|...+-+.+ +|.|-
T Consensus 485 ~~T~siG~iGl~E~~~~~~G~~~~e~~e~~~fa~~vl~~m~~~~~~~~----~e~g~ 537 (711)
T PRK09263 485 RATISLGYIGLYETINALYGGSWEVNPEAKAFALAIVKRMKDACDQWK----KETGY 537 (711)
T ss_pred CceEeeeHhHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHHHHHHHHHH----HHHCC
Confidence 2 46799999999986 7888877 99999999999999998877655 55553
No 38
>PRK07111 anaerobic ribonucleoside triphosphate reductase; Provisional
Probab=98.88 E-value=2.1e-06 Score=103.77 Aligned_cols=260 Identities=18% Similarity=0.238 Sum_probs=148.1
Q ss_pred eHHHHHHHHHHHHHhhCCceeEehhhh-hhhcCCCCCCcee--eecCCccccccCC----CCc--ceeEEecccccchhc
Q 003561 385 QAQNLWFEILTSQIETGTPYMLFKDTC-NRKSNQQNLGTIK--SSNLCTEIIEYTS----PTE--TAVCNLASIALPRFV 455 (811)
Q Consensus 385 ~Ar~L~~~I~~~~~etG~P~i~f~D~~-Nr~~~~~~~g~I~--~sNlC~EI~~~~~----~~e--~~~CNL~SInL~~~v 455 (811)
|-.+||+..+++....+.|+++|.|.. |..... .|.-. -.--|+-..+..+ ..- ++.-.+.+|||++.-
T Consensus 378 p~~~l~~la~~~~~kr~~p~f~~~~~~~~~~~~~--~g~~~~~v~~MgCR~~l~~~~~G~~~~~g~Gn~gvVTINLpRiA 455 (735)
T PRK07111 378 PNYDLFKLACRVAAKRLFPNFSFLDAPFNKEYYD--KGRPPTEVATMGCRTRVMSNVNGEEGTKGRGNLSFTTINLPRLA 455 (735)
T ss_pred chHHHHHHHHHHhcCcCCCceeecccccchhccC--CCCcCcCcccCCCcceecccCCCcccccCccceeEEEecHHHHH
Confidence 367899999999999999999999865 221100 01100 0012222211110 111 334445689999985
Q ss_pred ccCCCCCCCCCccccccCCCCCccCCHHHHHHHHHHHHHHHHH---HH---hcCCCcHHHH---HHHh------------
Q 003561 456 REKDVPVESHPSRIVGSRGSKNRFFDFEKLAEVTAIVTENLNK---II---DVNYYPVETA---RRSN------------ 514 (811)
Q Consensus 456 ~~~~~~~~~~~~~~~g~~~~~~~~fD~~~L~~~v~~avr~LD~---vI---d~~~~p~~~~---~~~~------------ 514 (811)
... .++...| |+.|.+.+.++.+.|+. ++ ....+|+-.. -...
T Consensus 456 ~~a---------------~~d~~~F-~~~L~~~l~la~~~L~~R~~~l~~~~~~~~P~~~~~g~~l~~~~l~~~~~~~~~ 519 (735)
T PRK07111 456 IEA---------------KKDIDKF-FELLDERLELAIEQLLHRYEVQKTLKVKDFPFLMGQGLWKGSENLGPDDSIEPV 519 (735)
T ss_pred HHh---------------CCCHHHH-HHHHHHHHHHHHHHHHHHHHHHHhcccccCchHhhcccccccccCCCccchhHH
Confidence 421 0111122 45677777777666642 12 2344665321 0000
Q ss_pred hccCCeeeecchHHHHHHH-cCCCC-CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCCCCCCccccCCCCcccccc
Q 003561 515 LRHRPIGIGVQGLADTFIL-LGMAF-ESPEAQQLNKDIFETIYYHALKTSSEIAAKEGPYETYHNSPVSKGILQPDMWNV 592 (811)
Q Consensus 515 ~~~R~iGlGv~Glad~L~~-~gi~y-~S~ea~~l~~~i~e~i~~~a~~aS~eLAke~G~~~~f~~S~~~~G~l~~d~~~~ 592 (811)
-++-.+.||+.||+.++.. .|..+ .+++|.+|+.+|.++|...+-+.+.+ .|---....+|.
T Consensus 520 ~~~~t~tiG~iGL~Ea~~~l~G~~~~~~~ea~~fa~~Il~~m~~~~~~~~~e----~G~~~~l~~tPA------------ 583 (735)
T PRK07111 520 LKQGTLGIGFIGLAETLVALTGKHHGESEEAQELGLKIVSHMRDFCDEYKEE----YKLNYSLLATPA------------ 583 (735)
T ss_pred hhcCceeeeHHHHHHHHHHhcCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHH----hCCCceEEEccc------------
Confidence 1234568999999999864 78776 79999999999999999877655533 332100111111
Q ss_pred CCCCcccHHHHHHHHHhcCccccceeccCCCCccccccCCCccccccccceeEEEcccCceEEeChHHHHHHHHcCCCcH
Q 003561 593 IPSDRWDWGVLRDMISKNGVRNSLLVAPMPTASTSQILGNNECFEPYTSNIYSRRVLSGEFVVVNKHLLHDLTEMGIWSP 672 (811)
Q Consensus 593 ~~~~~~dW~~Lr~~i~~~G~RNs~l~AiaPT~stS~i~g~s~gieP~~s~~y~r~~~~g~~~~vn~~l~~~l~~~g~~~~ 672 (811)
...--.-.+.|.++||+ +.|+++ .|+|.|-|.
T Consensus 584 ---Es~~~rfa~~D~~~fg~----------------i~g~~d--~~yYTNS~h--------------------------- 615 (735)
T PRK07111 584 ---EGLSGRFIKMDRKKFGE----------------IKGVTD--KEYYTNSFH--------------------------- 615 (735)
T ss_pred ---chhHHHHHHHHHHhcCC----------------CCCCCC--CCcccccee---------------------------
Confidence 00000111445556663 113221 134443221
Q ss_pred HHhhhhhccCCcccccCCCchHHHhhhhhhccCChHHHHHHHHHhccccccccceeEeeCC---CCHHHHHHHHHHHHHc
Q 003561 673 TIKNKIIYDDGSVQKIPEIPEELKMIYKTVWEIKQMTLVDMAVDRGCYIDQSQSLNIHMDQ---PNFKKVTSLHFRTWSR 749 (811)
Q Consensus 673 ~~~~~i~~~~Gsv~~i~~~p~~~k~~f~ta~ei~~~~~i~~~a~~Q~~vDqs~S~~l~~~~---~~~~~l~~~~~~Awk~ 749 (811)
+| + -.++++-+.|+..+.+|++..-+...-+++++ ++.+-+.++-.+|.+.
T Consensus 616 ------------------lp-----v---~~~~~~~eki~~e~~~~~~~~GG~i~~v~l~~e~~~n~eal~~lvk~~~~~ 669 (735)
T PRK07111 616 ------------------VP-----V---YYPISIFEKIEIEAPYHKLTNGGHISYVELDGDPSKNVEAFEIIVKAMKNT 669 (735)
T ss_pred ------------------ec-----C---CCCCCHHHHHHhhcccccccCCeEEEEEEeCCccCCCHHHHHHHHHHHHhC
Confidence 11 1 23467788999999999999999999999974 4667788887778776
Q ss_pred CCc
Q 003561 750 GLK 752 (811)
Q Consensus 750 GlK 752 (811)
|+.
T Consensus 670 ~i~ 672 (735)
T PRK07111 670 NIG 672 (735)
T ss_pred CCc
Confidence 654
No 39
>PRK00464 nrdR transcriptional regulator NrdR; Validated
Probab=97.83 E-value=1.8e-05 Score=77.74 Aligned_cols=77 Identities=18% Similarity=0.317 Sum_probs=54.7
Q ss_pred CeEEecCCceeecChHHHHHHHHHHHccCCCCCCCHHHHHHHHHhhcC----CCCCHHHHHHHHHHHHHhhccCCCChHH
Q 003561 1 MYVVKRDGRQEAVHFDKITARLKKLSYGLSTEHCDPVLVSQKVCAGVY----KGVTTSQLDELAAETAAAMTTNHPDYAS 76 (811)
Q Consensus 1 ~~V~KrdG~~e~~~~~ki~~~i~~~~~~l~~~~v~~~~i~~~~~~~l~----~gitt~ei~~~~~~~a~~~~~~~p~y~~ 76 (811)
++|+||||+.++|+.+||..+|.+|......+.-....++.+|...++ ++|+++|||+++.++.... .+=.|..
T Consensus 49 i~VIKRDG~~v~Fd~~KI~~AI~kA~~a~~~~~~~~~~i~~~V~~~l~~~~~~~IsveEIqDiVE~~L~~~--~~~ay~r 126 (154)
T PRK00464 49 LLVIKKDGRREPFDREKLRRGLRRACEKRPVSSEQIEAAVSRIERQLRASGEREVPSKEIGELVMEELKKL--DEVAYVR 126 (154)
T ss_pred cEEEecCCcCCCcCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHcCCCCCCHHHHHHHHHHHHHhc--CCEEEEE
Confidence 369999999999999999999999886643111223355666666665 4899999999988766333 3335555
Q ss_pred HHH
Q 003561 77 LAA 79 (811)
Q Consensus 77 lA~ 79 (811)
+|+
T Consensus 127 fa~ 129 (154)
T PRK00464 127 FAS 129 (154)
T ss_pred hhh
Confidence 554
No 40
>cd01675 RNR_III Class III ribonucleotide reductase. Ribonucleotide reductase (RNR) catalyzes the reductive synthesis of deoxyribonucleotides from their corresponding ribonucleotides. It provides the precursors necessary for DNA synthesis. RNRs are separated into three classes based on their metallocofactor usage. Class I RNRs, found in eukaryotes, bacteria, and bacteriophage, use a diiron-tyrosyl radical. Class II RNRs, found in bacteria, bacteriophage, algae and archaea, use coenzyme B12 (adenosylcobalamin, AdoCbl). Class III RNRs, found in strict or facultative anaerobic bacteria, bacteriophage, and archaea, use an FeS cluster and S-adenosylmethionine to generate a glycyl radical. Many organisms have more than one class of RNR present in their genomes. All three RNRs have a ten-stranded alpha-beta barrel domain that is structurally similar to the domain of PFL (pyruvate formate lyase). The class III enzyme from phage T4 consists of two subunits, this model covers the larger subunit w
Probab=97.77 E-value=0.0011 Score=78.59 Aligned_cols=254 Identities=21% Similarity=0.309 Sum_probs=151.9
Q ss_pred HHHHHHHHHHHHHhhCCceeEehhhhhhhcCCCCCCceeeecCCcccc-----------ccCCCCcceeEEecccccchh
Q 003561 386 AQNLWFEILTSQIETGTPYMLFKDTCNRKSNQQNLGTIKSSNLCTEII-----------EYTSPTETAVCNLASIALPRF 454 (811)
Q Consensus 386 Ar~L~~~I~~~~~etG~P~i~f~D~~Nr~~~~~~~g~I~~sNlC~EI~-----------~~~~~~e~~~CNL~SInL~~~ 454 (811)
-.++++.+++++.++|.|+..|.+.. ... .|.+. -=|+-.. ....+.-+++..+.+|||++.
T Consensus 228 ~~d~~~~~~~~~~k~~~p~f~n~~~~--~~~---~~~~~--~mcCR~~l~~~~~~~~~~~~~~~~~~Gs~~vvTiNLpRi 300 (555)
T cd01675 228 NYDLKELAFECAAKRGYPYFLNFDNS--DNV---PGDVR--AMGCRLFLDKNELKRGGGLEGSGDGTGNIGVVTINLPRI 300 (555)
T ss_pred chHHHHHHHHHHHHHCCCCccccccc--ccc---CCCcc--cccCccccchhhhcccCCCCccCcccceeeeEEechHHH
Confidence 35678999999999999999987653 111 12111 1233111 111223456677779999998
Q ss_pred cccCCCCCCCCCccccccCCCCCccCCHHHHHHHHHHHHHHHHHH-------HhcCCCcHHHHHHHh------hccCCee
Q 003561 455 VREKDVPVESHPSRIVGSRGSKNRFFDFEKLAEVTAIVTENLNKI-------IDVNYYPVETARRSN------LRHRPIG 521 (811)
Q Consensus 455 v~~~~~~~~~~~~~~~g~~~~~~~~fD~~~L~~~v~~avr~LD~v-------Id~~~~p~~~~~~~~------~~~R~iG 521 (811)
.... .++...| |+.|.+.+.++.+.|+.= +....+|+-...... ..+-..-
T Consensus 301 a~~a---------------~~d~~~F-~~~L~~~l~l~~~~l~~r~~~l~~~~~~~~~~l~~~g~~~~~~~~~~~~~~~t 364 (555)
T cd01675 301 AYEA---------------RGDEEKF-FELLDEYLELAKDALEIRRKRLKEALARGLPPLYQEGLGGGKLLFILKRHTLT 364 (555)
T ss_pred HHHh---------------cCCHHHH-HHHHHHHHHHHHHHHHHHHHHHHHhhhcCCCHHHHcCcccccceecCCCeEEe
Confidence 6531 0111112 456777777776554432 233446654443333 3455677
Q ss_pred eecchHHHHHHH-cCCCCC-CHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCCCCCCccccCCCCccccccCCCCccc
Q 003561 522 IGVQGLADTFIL-LGMAFE-SPEAQQLNKDIFETIYYHALKTSSEIAAKEGPYETYHNSPVSKGILQPDMWNVIPSDRWD 599 (811)
Q Consensus 522 lGv~Glad~L~~-~gi~y~-S~ea~~l~~~i~e~i~~~a~~aS~eLAke~G~~~~f~~S~~~~G~l~~d~~~~~~~~~~d 599 (811)
||+.||++++.. .|-..+ ++||.+|+.+|.++|...+.+.+ +|.|--=..+.+|. ...-
T Consensus 365 iG~iGL~Ea~~~l~g~~~~~~~~~~~f~~~il~~m~~~~~~~~----~e~g~~~~l~~tPa---------------Es~~ 425 (555)
T cd01675 365 IGFIGLNEAAEALTGKGIGESEEAREFGIRILEHIRERADEFK----EETGLLYSVEATPA---------------ESLA 425 (555)
T ss_pred EEEehHHHHHHHhcCCCCCCCHHHHHHHHHHHHHHHHHHHHHH----HHHCCceEEEEccc---------------chHH
Confidence 999999998865 454554 99999999999999998877666 44442111112221 0000
Q ss_pred HHHHHHHHHhcC-ccccceeccCCCCccccccCCCccccccccceeEEEcccCceEEeChHHHHHHHHcCCCcHHHhhhh
Q 003561 600 WGVLRDMISKNG-VRNSLLVAPMPTASTSQILGNNECFEPYTSNIYSRRVLSGEFVVVNKHLLHDLTEMGIWSPTIKNKI 678 (811)
Q Consensus 600 W~~Lr~~i~~~G-~RNs~l~AiaPT~stS~i~g~s~gieP~~s~~y~r~~~~g~~~~vn~~l~~~l~~~g~~~~~~~~~i 678 (811)
-.-.+.+-+++| + +-|.+. .|++.|-|
T Consensus 426 ~rfa~~D~~~~g~i----------------~~g~~d--~~yyTNS~---------------------------------- 453 (555)
T cd01675 426 YRFAKKDRKKYGDI----------------IPGVTD--KPYYTNSF---------------------------------- 453 (555)
T ss_pred HHHHHHHHHHcCcc----------------CCCCCC--CCCCCCCE----------------------------------
Confidence 011144455677 2 122221 12222211
Q ss_pred hccCCcccccCCCchHHHhhhhhhccCChHHHHHHHHHhccccccccceeEeeCC--CCHHHHHHHHHHHHHcCCc
Q 003561 679 IYDDGSVQKIPEIPEELKMIYKTVWEIKQMTLVDMAVDRGCYIDQSQSLNIHMDQ--PNFKKVTSLHFRTWSRGLK 752 (811)
Q Consensus 679 ~~~~Gsv~~i~~~p~~~k~~f~ta~ei~~~~~i~~~a~~Q~~vDqs~S~~l~~~~--~~~~~l~~~~~~Awk~GlK 752 (811)
++ | --.++++-+.|+..+.+|++.+-+...-+++++ ++++.+.++..+|.+.|+.
T Consensus 454 --------hi---p--------v~~~~~~~eki~~e~~f~~~~~GG~i~hv~l~e~~~n~~al~~lv~~a~~~~~~ 510 (555)
T cd01675 454 --------HV---P--------VYEDIDPFEKIDIEAKLHPLTTGGHILHIELGEAKPNPEALEALVKKAAKRGVI 510 (555)
T ss_pred --------Ee---e--------CCCCCCHHHHHHhhcccccccCCceEEEEECCCCCCCHHHHHHHHHHHHHcCCc
Confidence 11 1 122366777899999999999999999999986 4788999999999997643
No 41
>PRK10977 hypothetical protein; Provisional
Probab=97.52 E-value=0.0057 Score=71.39 Aligned_cols=257 Identities=16% Similarity=0.197 Sum_probs=156.9
Q ss_pred eHHHHHHHHHHHHHhhCCceeEehhhhhhhcC-CCCCCceeeecCCccccccCCCCcceeEE--ecccccchhcccCCCC
Q 003561 385 QAQNLWFEILTSQIETGTPYMLFKDTCNRKSN-QQNLGTIKSSNLCTEIIEYTSPTETAVCN--LASIALPRFVREKDVP 461 (811)
Q Consensus 385 ~Ar~L~~~I~~~~~etG~P~i~f~D~~Nr~~~-~~~~g~I~~sNlC~EI~~~~~~~e~~~CN--L~SInL~~~v~~~~~~ 461 (811)
+-.+++++.++....+|.|.+++ |.++...- ....|.+ =|.|-. + .+.|| +.+|||++.-...
T Consensus 190 tp~d~l~~A~e~~~~~g~P~f~N-d~~~i~~~~a~~ygi~----gC~~~l-~-----~g~GsigvVTINLpRIA~~a--- 255 (509)
T PRK10977 190 TPDDLLLLAAKNICECSKPHIAN-HPVHDKDFTKGGYGIV----SCYNSL-P-----LGGGAYTLVRLNLKEVAKRA--- 255 (509)
T ss_pred CCHHHHHHHHHHHhccCCCceec-CHhHHHhhcccCCcee----eeeccC-C-----CCcCCceeEEeeHHHHHHHC---
Confidence 34899999999999999999988 44443321 1223433 355543 2 13344 4589999985431
Q ss_pred CCCCCccccccCCCCCccCCHHHHHHHHHHHHHHHHH----HHhc-CCCcHHHHHH-H-hhccCCe-eeecchHHHHHHH
Q 003561 462 VESHPSRIVGSRGSKNRFFDFEKLAEVTAIVTENLNK----IIDV-NYYPVETARR-S-NLRHRPI-GIGVQGLADTFIL 533 (811)
Q Consensus 462 ~~~~~~~~~g~~~~~~~~fD~~~L~~~v~~avr~LD~----vId~-~~~p~~~~~~-~-~~~~R~i-GlGv~Glad~L~~ 533 (811)
.+...|=.+.|.+.+.++...|+. +.+. +.||++-..+ . -...|=. -||+.|||+++..
T Consensus 256 -------------~~~e~F~~~~L~~~~~l~~e~l~~R~~~l~e~~~~~~~~fL~~eg~~~~d~f~~tiGiiGLaEav~~ 322 (509)
T PRK10977 256 -------------ESVDDFFDNVLPHYCQQMIEIIDARIRFLVEESNFFESSFLVKEGLIDPERFTPMFGIYGLAEAVNL 322 (509)
T ss_pred -------------CChHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccCCCchHhhcCCccccccccCccHhHHHHHHHH
Confidence 111123223677777887777665 3322 4577332111 0 0112222 5999999999887
Q ss_pred c----CCC--CC-CHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCC-CCCCCCCccccCCCCccccccCCCCcccHHHHHH
Q 003561 534 L----GMA--FE-SPEAQQLNKDIFETIYYHALKTSSEIAAKEGP-YETYHNSPVSKGILQPDMWNVIPSDRWDWGVLRD 605 (811)
Q Consensus 534 ~----gi~--y~-S~ea~~l~~~i~e~i~~~a~~aS~eLAke~G~-~~~f~~S~~~~G~l~~d~~~~~~~~~~dW~~Lr~ 605 (811)
+ |.. |+ |+||.+|+.+|.++|...+ +|.|. | .+. | ..++
T Consensus 323 l~g~~g~~~~~g~seea~~l~~~Il~~m~~~~--------~e~~~~Y-g~~------~-----------------Rf~~- 369 (509)
T PRK10977 323 LLEKEGLAARYGKDEAANELGYRISAQLAEIV--------ENTPVKY-GWG------G-----------------RALL- 369 (509)
T ss_pred HhcCCCcccCcCCCHHHHHHHHHHHHHHHHHH--------HHhCCcc-Chh------h-----------------HHHH-
Confidence 6 333 43 7999999999999999443 34442 2 000 0 0011
Q ss_pred HHHhcCccccceeccCCCCccccccCCCccccccccceeEEEcccCceEEeChHHHHHHHHcCCCcHHHhhhhhccCCcc
Q 003561 606 MISKNGVRNSLLVAPMPTASTSQILGNNECFEPYTSNIYSRRVLSGEFVVVNKHLLHDLTEMGIWSPTIKNKIIYDDGSV 685 (811)
Q Consensus 606 ~i~~~G~RNs~l~AiaPT~stS~i~g~s~gieP~~s~~y~r~~~~g~~~~vn~~l~~~l~~~g~~~~~~~~~i~~~~Gsv 685 (811)
..+.|+ +.. -+.|+|++
T Consensus 370 -~~q~G~-------------~~d-~~yTns~h------------------------------------------------ 386 (509)
T PRK10977 370 -HAQSGI-------------SSD-KGVTPGVR------------------------------------------------ 386 (509)
T ss_pred -HHHhCC-------------CCC-CCccCCeE------------------------------------------------
Confidence 001111 000 02333321
Q ss_pred cccCCCchHHHhhhhhhccCChHHHHHHHHHhccccccccceeEeeCC---CCHHHHHHHHHHHHHcCCceEEEEecCcc
Q 003561 686 QKIPEIPEELKMIYKTVWEIKQMTLVDMAVDRGCYIDQSQSLNIHMDQ---PNFKKVTSLHFRTWSRGLKTGMYYLRSRA 762 (811)
Q Consensus 686 ~~i~~~p~~~k~~f~ta~ei~~~~~i~~~a~~Q~~vDqs~S~~l~~~~---~~~~~l~~~~~~Awk~GlKt~~YY~r~~~ 762 (811)
+ | --.++++-++|+..|..|+|..-+.+.-+++.. .+++-+.++-..|.+.|+.=.+.+.-+..
T Consensus 387 --i---P--------V~~e~d~~eki~~ea~~h~~~tGG~i~i~~ld~~~~~NpeAl~~lvk~a~~~gi~Yfsin~~~~d 453 (509)
T PRK10977 387 --I---P--------YGDEPDPITHLQTSAPHHKYYPSGISDILTFDETIKRNPQALVDLCKGAFKAGMREFTANVSGND 453 (509)
T ss_pred --e---c--------CCCCCCHHHHHHhhcccCCccCCceEEEEEecCCCCCCHHHHHHHHHHHHhCCCCEEEEEccCCc
Confidence 1 1 123467788999999999999999988888853 46788999999999999988888887777
Q ss_pred ccccccccccccccc
Q 003561 763 AADAIKFTVDTSVFK 777 (811)
Q Consensus 763 ~~~~~~~~~~~~~~~ 777 (811)
--+...+.|..+.++
T Consensus 454 ~vrvtgy~~~~s~~~ 468 (509)
T PRK10977 454 LVRVTGYMVKLSDIE 468 (509)
T ss_pred eEEEEeEEeeHHHHH
Confidence 777777777655443
No 42
>TIGR02487 NrdD anaerobic ribonucleoside-triphosphate reductase. This model represents the oxygen-sensitive (anaerobic, class III) ribonucleotide reductase. The mechanism of the enzyme involves a glycine-centered radical, a C-terminal zinc binding site, and a set of conserved active site cysteines and asparagines. This enzyme requires an activating component, NrdG, a radical-SAM domain containing enzyme (TIGR02491). Together the two form an alpha-2/beta-2 heterodimer.
Probab=97.44 E-value=0.0075 Score=71.89 Aligned_cols=251 Identities=20% Similarity=0.272 Sum_probs=149.3
Q ss_pred HHHHHHHHHHHhhCCceeEehhhhhhhcCCCCCCceeeecCCcccccc--------CCCCcceeEEecccccchhcccCC
Q 003561 388 NLWFEILTSQIETGTPYMLFKDTCNRKSNQQNLGTIKSSNLCTEIIEY--------TSPTETAVCNLASIALPRFVREKD 459 (811)
Q Consensus 388 ~L~~~I~~~~~etG~P~i~f~D~~Nr~~~~~~~g~I~~sNlC~EI~~~--------~~~~e~~~CNL~SInL~~~v~~~~ 459 (811)
++++.+++...++|.||+++.|+.-.. .|.+.++ =|+-..+- ..+.-.+...+.+|||++.-...
T Consensus 233 d~~~~a~~~~ak~~~P~f~n~~~~~~~-----~~~~~~~-MgCR~~l~~~~~~~~~~~~~~~Gn~gvvTiNLpRiA~~a- 305 (579)
T TIGR02487 233 DLFELAFECAAKRGYPYFLNLDPEDNV-----KEDVRYP-MGCRTFLSPNENGDGEESYIGRGNIGVTSINLPRIAYKS- 305 (579)
T ss_pred HHHHHHHHHHHHhCCCCcccchhhhcc-----CCCeecc-CCCcccccceecCCCCccCcccceeeeEEcchHHHHHHh-
Confidence 799999999999999999986643211 1222211 23322111 11222345556689999986431
Q ss_pred CCCCCCCccccccCCCCCccCCHHHHHHHHHHHHHHHHHHHh------cCCCcHHHHH---HH----------hhccCCe
Q 003561 460 VPVESHPSRIVGSRGSKNRFFDFEKLAEVTAIVTENLNKIID------VNYYPVETAR---RS----------NLRHRPI 520 (811)
Q Consensus 460 ~~~~~~~~~~~g~~~~~~~~fD~~~L~~~v~~avr~LD~vId------~~~~p~~~~~---~~----------~~~~R~i 520 (811)
.++...| |+.|.+.+.++.+.|..=.+ ...+|.--.. .. ..++-.+
T Consensus 306 --------------~~d~~~F-~~~L~~~l~l~~~~L~~r~~~l~~~~~~~~p~~~~~~~~~~~~~~~~~i~~~~~~~~~ 370 (579)
T TIGR02487 306 --------------RGDEEEF-FEELDEYLEIAKEALEIRREYLKKMLAKDLPPMYSQGGWDGGNLLDESVEEILKSGTN 370 (579)
T ss_pred --------------CCCHHHH-HHHHHHHHHHHHHHHHHHHHHHHhhhhccCCHHHHhccccccccccchHHHHhhcCee
Confidence 0111122 45778888887766653332 1234433221 10 0234578
Q ss_pred eeecchHHHHHH-HcCCC-CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCCCCCCccccCCCCccccccCCCCcc
Q 003561 521 GIGVQGLADTFI-LLGMA-FESPEAQQLNKDIFETIYYHALKTSSEIAAKEGPYETYHNSPVSKGILQPDMWNVIPSDRW 598 (811)
Q Consensus 521 GlGv~Glad~L~-~~gi~-y~S~ea~~l~~~i~e~i~~~a~~aS~eLAke~G~~~~f~~S~~~~G~l~~d~~~~~~~~~~ 598 (811)
-||+.||++++. .+|.. .+|+||.+|+.+|.++|...+.+.+. |.|--=..+.+|. ...
T Consensus 371 siG~iGL~Ea~~~l~G~~~~~~~~a~~f~~~Il~~m~~~~~~~~~----e~g~~~~l~~TPA---------------Es~ 431 (579)
T TIGR02487 371 SIGFIGLNEALVALTGKHLHEEEEARELAIRILEFIRDKADEFKK----ETGLNYSVYATPA---------------ESL 431 (579)
T ss_pred eeehhhHHHHHHHhcCCCcCCCHHHHHHHHHHHHHHHHHHHHHHH----HHCCceEEEECCc---------------chH
Confidence 899999999886 68887 47899999999999999988776663 3342111111111 000
Q ss_pred cHHHHHHHHHhcCccccceeccCCCCccccccCCCccccccccceeEEEcccCceEEeChHHHHHHHHcCCCcHHHhhhh
Q 003561 599 DWGVLRDMISKNGVRNSLLVAPMPTASTSQILGNNECFEPYTSNIYSRRVLSGEFVVVNKHLLHDLTEMGIWSPTIKNKI 678 (811)
Q Consensus 599 dW~~Lr~~i~~~G~RNs~l~AiaPT~stS~i~g~s~gieP~~s~~y~r~~~~g~~~~vn~~l~~~l~~~g~~~~~~~~~i 678 (811)
--.-.+.+-+++|.. | |++.- |+++|-|.
T Consensus 432 ~~rfa~~D~~~fg~i--------~--------gv~d~--~yYTNS~h--------------------------------- 460 (579)
T TIGR02487 432 CGRFAKKDREEFGEI--------P--------GVTDK--PYYTNSFH--------------------------------- 460 (579)
T ss_pred HHHHHHHHHHHcCCC--------C--------CCCCC--CcCCCCEe---------------------------------
Confidence 001113344556631 1 22111 33333211
Q ss_pred hccCCcccccCCCchHHHhhhhhhccCChHHHHHHHHHhccccccccceeEeeCC--CCHHHHHHHHHHHHHcC
Q 003561 679 IYDDGSVQKIPEIPEELKMIYKTVWEIKQMTLVDMAVDRGCYIDQSQSLNIHMDQ--PNFKKVTSLHFRTWSRG 750 (811)
Q Consensus 679 ~~~~Gsv~~i~~~p~~~k~~f~ta~ei~~~~~i~~~a~~Q~~vDqs~S~~l~~~~--~~~~~l~~~~~~Awk~G 750 (811)
+ | + -.++++-+.|+..+.+|++..-+...-+++++ .+.+.+.++..+|.+.|
T Consensus 461 ---------i---p-----v---~~~~~~~eki~~e~~f~~~~~GG~i~~v~l~e~~~n~eal~~lv~~a~~~~ 514 (579)
T TIGR02487 461 ---------V---P-----V---YEDVNLGEKIDIEAPFHPLTNGGHITYIELDEAIPDPEALKDITKKAMKNG 514 (579)
T ss_pred ---------e---C-----C---CCCCCHHHHHHhhcchhcccCCceEEEEEcCCCCCCHHHHHHHHHHHHhcC
Confidence 1 1 1 22467788899999999999999999999985 46788999999999977
No 43
>PRK14704 anaerobic ribonucleoside triphosphate reductase; Provisional
Probab=97.35 E-value=0.011 Score=70.79 Aligned_cols=259 Identities=16% Similarity=0.201 Sum_probs=151.4
Q ss_pred eHHHHHHHHHHHHHhhCCceeEehhhh-hhhcCCCCCC-ceeeecCCccccccC------CCCcceeEEecccccchhcc
Q 003561 385 QAQNLWFEILTSQIETGTPYMLFKDTC-NRKSNQQNLG-TIKSSNLCTEIIEYT------SPTETAVCNLASIALPRFVR 456 (811)
Q Consensus 385 ~Ar~L~~~I~~~~~etG~P~i~f~D~~-Nr~~~~~~~g-~I~~sNlC~EI~~~~------~~~e~~~CNL~SInL~~~v~ 456 (811)
|-.+||+..+++..+.+.|.++|.|.. |........+ .+. --|+-..+.. .+.-++.-.+.+|||++.-.
T Consensus 259 p~~~l~~la~~~~~kr~~p~f~~~~~~~n~~~~~g~~~~~~~--~MgCR~~l~~~~~G~~~~~g~GnigvVTINLPRIA~ 336 (618)
T PRK14704 259 PNYDLFELALETTAERLFPNFSFLDAPFNAVHYDGRPESEVC--YMGCRTRVMSNIHGEETAIGRGNLSFTSINLVKLAL 336 (618)
T ss_pred chHHHHHHHHHHhcCcCCcceeccccccchhhhcCCCCcccc--cCcccceeccccCCCcCCCccceeeeEEeeHHHHHH
Confidence 467899999999999999999999853 2110000001 110 1122211111 11122333445899999864
Q ss_pred cCCCCCCCCCccccccCCCCCccCCHHHHHHHHHHHHHHHHHHHh------cCCCcHHHHHHH---h------------h
Q 003561 457 EKDVPVESHPSRIVGSRGSKNRFFDFEKLAEVTAIVTENLNKIID------VNYYPVETARRS---N------------L 515 (811)
Q Consensus 457 ~~~~~~~~~~~~~~g~~~~~~~~fD~~~L~~~v~~avr~LD~vId------~~~~p~~~~~~~---~------------~ 515 (811)
.. ++...| |+.|.+.+.++.+.|+.=++ ...+|.--..-. . -
T Consensus 337 ~a----------------~d~e~F-~~~L~~~l~l~~~~L~~R~~~l~~~~~~~~P~l~~~g~~~~~~~l~~~~~~~~~~ 399 (618)
T PRK14704 337 IS----------------GSKEAF-FEALNYYLDLGIKQLLERFEYQCTKRARDFRFLYSQGVWRGGEKLQPEDSVASIL 399 (618)
T ss_pred HC----------------CCHHHH-HHHHHHHHHHHHHHHHHHHHHHHhcccccCCHHHHCcccccccccCCCcchhhhc
Confidence 31 111112 45677777788776655332 223453311100 0 0
Q ss_pred ccCCeeeecchHHHHHH-HcCCCC-CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCCCCCCccccCCCCccccccC
Q 003561 516 RHRPIGIGVQGLADTFI-LLGMAF-ESPEAQQLNKDIFETIYYHALKTSSEIAAKEGPYETYHNSPVSKGILQPDMWNVI 593 (811)
Q Consensus 516 ~~R~iGlGv~Glad~L~-~~gi~y-~S~ea~~l~~~i~e~i~~~a~~aS~eLAke~G~~~~f~~S~~~~G~l~~d~~~~~ 593 (811)
++-.+-||+.||++++. ..|-.+ .|+||.+|+.+|.++|...+.+.+ +|.|--=..+.+|.
T Consensus 400 ~~~t~siG~iGL~Ea~~~l~G~~~~~~~ea~~fa~~Il~~m~~~~~~~~----~e~g~~~nl~~TPA------------- 462 (618)
T PRK14704 400 KQGTLSLGFIGLAECLVALTGKHHGEDEESWKLGYEIISFMRDRMDKAT----EEHELNFSVIATPA------------- 462 (618)
T ss_pred ccceeeeeHHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHHHHHHHHHHH----HHHCCCceeeeccc-------------
Confidence 12236799999999875 567666 799999999999999998877665 44553212222221
Q ss_pred CCCcccHHHHHHHHHhcCccccceeccCCCCccccccCCCccccccccceeEEEcccCceEEeChHHHHHHHHcCCCcHH
Q 003561 594 PSDRWDWGVLRDMISKNGVRNSLLVAPMPTASTSQILGNNECFEPYTSNIYSRRVLSGEFVVVNKHLLHDLTEMGIWSPT 673 (811)
Q Consensus 594 ~~~~~dW~~Lr~~i~~~G~RNs~l~AiaPT~stS~i~g~s~gieP~~s~~y~r~~~~g~~~~vn~~l~~~l~~~g~~~~~ 673 (811)
...--.-.+.+-+++|+ +.|+++ .|+|.|-|.
T Consensus 463 --Es~~~Rfa~~D~~~fg~----------------i~gv~d--~~YYTNS~h---------------------------- 494 (618)
T PRK14704 463 --EGLSGKFVKKDREEFGV----------------ISGITN--HNYYTNSFH---------------------------- 494 (618)
T ss_pred --ccHHHHHHHHHHHhCCC----------------cCCCCC--CCcccCcee----------------------------
Confidence 10111234445566653 124433 456555431
Q ss_pred HhhhhhccCCcccccCCCchHHHhhhhhhccCChHHHHHHHHHhccccccccceeEeeC-C--CCHHHHHHHHHHHHHcC
Q 003561 674 IKNKIIYDDGSVQKIPEIPEELKMIYKTVWEIKQMTLVDMAVDRGCYIDQSQSLNIHMD-Q--PNFKKVTSLHFRTWSRG 750 (811)
Q Consensus 674 ~~~~i~~~~Gsv~~i~~~p~~~k~~f~ta~ei~~~~~i~~~a~~Q~~vDqs~S~~l~~~-~--~~~~~l~~~~~~Awk~G 750 (811)
+| + -.++++-+.|+..+.+|++..-+...-++++ + ++.+.+.++..+|.+.|
T Consensus 495 -----------------ip-----V---~~~~~~~eki~~e~~fh~~~~GG~I~hv~l~~~~~~n~~Al~~lvk~~~~~~ 549 (618)
T PRK14704 495 -----------------IP-----V---YYNIQAINKIRLEGPFHALCNGGHITYIELDGAAMHNKKALKQIVQAMAEHG 549 (618)
T ss_pred -----------------cc-----C---CCCCCHHHHHHhhcccccccCCeEEEEEEECCccCCCHHHHHHHHHHHHhcC
Confidence 11 1 2346778889999999999999999999995 4 47788888888887755
Q ss_pred Cc
Q 003561 751 LK 752 (811)
Q Consensus 751 lK 752 (811)
+.
T Consensus 550 i~ 551 (618)
T PRK14704 550 VG 551 (618)
T ss_pred Cc
Confidence 44
No 44
>TIGR00244 transcriptional regulator NrdR. Members of this almost entirely bacterial family contain an ATP cone domain (PFAM:PF03477). There is never more than one member per genome. Common gene symbols given include nrdR, ybaD, ribX and ytcG. The member from Streptomyces coelicolor is found upstream in the operon of the class II oxygen-independent ribonucleotide reductase gene nrdJ and was shown to repress nrdJ expression. Many members of this family are found near genes for riboflavin biosynthesis in Gram-negative bacteria, suggesting a role in that pathway. However, a phylogenetic profiling study associates members of this family with the presence of a palindromic signal with consensus acaCwAtATaTwGtgt, termed the NrdR-box, an upstream element for most operons for ribonucleotide reductase of all three classes in bacterial genomes.
Probab=97.27 E-value=0.00054 Score=66.17 Aligned_cols=72 Identities=14% Similarity=0.199 Sum_probs=54.6
Q ss_pred eEEecCCceeecChHHHHHHHHHHHccCCCCCCCHH---HHHHHHHhhcC----CCCCHHHHHHHHHHHHHhhccCCCCh
Q 003561 2 YVVKRDGRQEAVHFDKITARLKKLSYGLSTEHCDPV---LVSQKVCAGVY----KGVTTSQLDELAAETAAAMTTNHPDY 74 (811)
Q Consensus 2 ~V~KrdG~~e~~~~~ki~~~i~~~~~~l~~~~v~~~---~i~~~~~~~l~----~gitt~ei~~~~~~~a~~~~~~~p~y 74 (811)
.|+|+||+.||||.+||..-|..||+.=+ |+.+ .++..+...|. ..|++.+|=+++.+....+ ++=.|
T Consensus 50 ~ViKkdG~re~Fdr~Kl~~gl~~Ac~KRp---Vs~e~ie~~v~~Ie~~l~~~~~~EI~S~~IGe~Vm~~L~~l--D~VAY 124 (147)
T TIGR00244 50 TVIKQDGVREPFNREKLLRGMVRACEKRP---VSFDDLEHAINHIEAQLRAQGEREVPSELIGQMVMQYLKKL--DEVAY 124 (147)
T ss_pred EEEcCCCCCCCCCHHHHHHHHHHHhcCCC---CCHHHHHHHHHHHHHHHHHcCCCcccHHHHHHHHHHHHhhc--Ccchh
Confidence 58999999999999999999999999865 5544 45566666664 3589999999988766544 33355
Q ss_pred HHHH
Q 003561 75 ASLA 78 (811)
Q Consensus 75 ~~lA 78 (811)
-.+|
T Consensus 125 VRFA 128 (147)
T TIGR00244 125 IRFA 128 (147)
T ss_pred hhhh
Confidence 5554
No 45
>PF13597 NRDD: Anaerobic ribonucleoside-triphosphate reductase; PDB: 1HK8_A 1H78_A 1H7A_A 1H79_A 1H7B_A.
Probab=97.12 E-value=0.0075 Score=71.38 Aligned_cols=241 Identities=17% Similarity=0.256 Sum_probs=119.1
Q ss_pred eHHHHHHHHHHHHHhhCCceeEehhhhhhhcCCCCCCceeeecCCccccc-----------cCCCCcceeEEecccccch
Q 003561 385 QAQNLWFEILTSQIETGTPYMLFKDTCNRKSNQQNLGTIKSSNLCTEIIE-----------YTSPTETAVCNLASIALPR 453 (811)
Q Consensus 385 ~Ar~L~~~I~~~~~etG~P~i~f~D~~Nr~~~~~~~g~I~~sNlC~EI~~-----------~~~~~e~~~CNL~SInL~~ 453 (811)
+-.+||+..++...+.|.|++.+...-....+. |+-..+ ..++.-++++.-.||||++
T Consensus 224 ~~~~l~~~a~k~~~~~~~p~~~~~~~~~~~~~M-----------cCR~~l~~~~~~~~~~~~~~~~~~GnigvVTINLPR 292 (546)
T PF13597_consen 224 PNYDLFELAAKCGAKRFYPDFNSDLDPDDVRSM-----------CCRLRLSLNELGNGGGLFGSGDGTGNIGVVTINLPR 292 (546)
T ss_dssp TTHHHHHHHHHHHHHHS--EEEEHHHHHH---B-----------TTTB-----B-TTS-B-----TT-BEEEEEEEEHHH
T ss_pred chHHHHHHHHHHhHHhCCCCeecCCCCcceecc-----------ccccccChhhhccCCcceeccccccceeEEEecHHH
Confidence 568899999999999999999755432222111 111110 0011123333344799999
Q ss_pred hcccCCCCCCCCCccccccCCCCCccCCHHHHHHHHHHHHH-HHHHHHhcCCCcHHHHHHHhhccCCeeeecchHHHHHH
Q 003561 454 FVREKDVPVESHPSRIVGSRGSKNRFFDFEKLAEVTAIVTE-NLNKIIDVNYYPVETARRSNLRHRPIGIGVQGLADTFI 532 (811)
Q Consensus 454 ~v~~~~~~~~~~~~~~~g~~~~~~~~fD~~~L~~~v~~avr-~LD~vId~~~~p~~~~~~~~~~~R~iGlGv~Glad~L~ 532 (811)
..-.. .++..| |.+|.+. .++.| .+...++.+.||.-.......++-..-||+.||++++.
T Consensus 293 iA~~a----------------~~d~~~-f~~L~~~-~~~~r~~i~~~~~~~~~P~~~~~~~~~~~~~~tIG~iGL~Ea~~ 354 (546)
T PF13597_consen 293 IAYEA----------------KGDEDF-FEELDKL-MLAKRKVIKKLLEAGLYPFTKQYLWRLKNHFSTIGIIGLNEALQ 354 (546)
T ss_dssp HHHTT----------------EE-HHH-HHHHHHH-HHHHHHHHHHHHHGGG-HHHHTST-SHTTTTSEEEEE-HHHHHH
T ss_pred HHHHh----------------CCcHHH-HHHHHHH-HHHHHHHHHhhccCCcCchhHhhHhhhcCeeEeecHHHHHHHHH
Confidence 86431 011111 4455433 23323 56666778888875443333566678899999999999
Q ss_pred HcCCC-CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCCCCCCccccCCCCccccccCCCCcccHHHHHHHHHhcC
Q 003561 533 LLGMA-FESPEAQQLNKDIFETIYYHALKTSSEIAAKEGPYETYHNSPVSKGILQPDMWNVIPSDRWDWGVLRDMISKNG 611 (811)
Q Consensus 533 ~~gi~-y~S~ea~~l~~~i~e~i~~~a~~aS~eLAke~G~~~~f~~S~~~~G~l~~d~~~~~~~~~~dW~~Lr~~i~~~G 611 (811)
.+|-. .+++|+.+|+.+|.++|...+.+.+ +| +|
T Consensus 355 ~~g~~~~~~~~~~~f~~~Vl~~m~~~~~~~~----~e-----------------------------------------~g 389 (546)
T PF13597_consen 355 NFGGKHHESPEGREFALKVLEHMRDKADEFQ----EE-----------------------------------------TG 389 (546)
T ss_dssp HH---------TS--HHHHHHHHHHHHHHHH----HH-----------------------------------------HS
T ss_pred HHHHhcccHHHHHHHHHHHHHHHHHHHHHHH----HH-----------------------------------------HC
Confidence 87776 4789999999999999997765443 33 33
Q ss_pred ccccceeccCCCCccccccCCCccccccccceeEEEcccCceEEeChHHHHHHHHcCCCcHHHhhhhhccCCcccccCCC
Q 003561 612 VRNSLLVAPMPTASTSQILGNNECFEPYTSNIYSRRVLSGEFVVVNKHLLHDLTEMGIWSPTIKNKIIYDDGSVQKIPEI 691 (811)
Q Consensus 612 ~RNs~l~AiaPT~stS~i~g~s~gieP~~s~~y~r~~~~g~~~~vn~~l~~~l~~~g~~~~~~~~~i~~~~Gsv~~i~~~ 691 (811)
+.-+ +--.|++|+|-- ....|.++ |+.+ +.-.+.+. .+ +
T Consensus 390 ~~f~--le~TPAEs~~~r-----------------------------fak~D~~~-g~i~----~~~yytNs--~h---~ 428 (546)
T PF13597_consen 390 LLFN--LEATPAESLCYR-----------------------------FAKLDKEK-GIIT----DRDYYTNS--FH---L 428 (546)
T ss_dssp -EEE--EEE---TTHHHH-----------------------------HHHHHHHH----T----TTSS---T--T-----
T ss_pred CCEE--EEECchhHHHHH-----------------------------HHHHHHhc-CCcC----CCCcccCC--EE---c
Confidence 3222 222455555331 11112222 2110 00000010 01 1
Q ss_pred chHHHhhhhhhccCChHHHHHHHHHhccccccccceeEeeCC-CCHHHHHHHHHHHHH
Q 003561 692 PEELKMIYKTVWEIKQMTLVDMAVDRGCYIDQSQSLNIHMDQ-PNFKKVTSLHFRTWS 748 (811)
Q Consensus 692 p~~~k~~f~ta~ei~~~~~i~~~a~~Q~~vDqs~S~~l~~~~-~~~~~l~~~~~~Awk 748 (811)
| .-.++++.+-|+..+.+|++..-+--.-+++++ ++.+.+.++..+|.+
T Consensus 429 p--------v~~~~~~~ek~~~E~~~~~~~~GG~I~hv~l~e~~n~~al~~lv~~~~~ 478 (546)
T PF13597_consen 429 P--------VDEDIDPFEKIDLEAPFQKLYTGGHIFHVELGEKPNPEALEKLVRYAME 478 (546)
T ss_dssp ---------TTS---HHHHHHHHHHHHTTSTTB--EEEE----T-HHHHHHHHHHHHH
T ss_pred C--------CCCCCCHHHHHHhhcccccccCCceEEEEEcCCCCCHHHHHHHHHHHHH
Confidence 1 123467777888999999999999999999986 566788888888877
No 46
>PRK08579 anaerobic ribonucleoside triphosphate reductase; Provisional
Probab=96.87 E-value=0.042 Score=65.85 Aligned_cols=106 Identities=23% Similarity=0.305 Sum_probs=65.5
Q ss_pred ceeEEecccccchhcccCCCCCCCCCccccccCCCCCccCCHHHHHHHHHHHHHHHH---H----HHhc--CCCcHHHHH
Q 003561 441 TAVCNLASIALPRFVREKDVPVESHPSRIVGSRGSKNRFFDFEKLAEVTAIVTENLN---K----IIDV--NYYPVETAR 511 (811)
Q Consensus 441 ~~~CNL~SInL~~~v~~~~~~~~~~~~~~~g~~~~~~~~fD~~~L~~~v~~avr~LD---~----vId~--~~~p~~~~~ 511 (811)
++++.-.||||++.--.. .++...| |+.|.+.+.++.+.|. . .++. ..||.-...
T Consensus 333 ~GnigVVTINLPRIa~~a---------------~gd~~~F-~~~Ld~~lela~~~L~~kr~~~~~~~~~~~~l~P~~~~~ 396 (625)
T PRK08579 333 TGSVNVTTVNLPRIALEA---------------RGDDDKF-WELYEERLELVRITLDWFRERYVKLLKTYPEMYSMIKEY 396 (625)
T ss_pred cCceeeEeccHHHHHHHh---------------CCCHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHhhchhhhHHHHHh
Confidence 345555589999985421 0111122 5667777777766665 2 3333 446652211
Q ss_pred HHhh-ccCCeeeecchHHHHHHH-cCCC--------CCCHHHHHHHHHHHHHHHHHHHHHH
Q 003561 512 RSNL-RHRPIGIGVQGLADTFIL-LGMA--------FESPEAQQLNKDIFETIYYHALKTS 562 (811)
Q Consensus 512 ~~~~-~~R~iGlGv~Glad~L~~-~gi~--------y~S~ea~~l~~~i~e~i~~~a~~aS 562 (811)
-... +..-.-||+.||+.++.. .|.. -++++|.+++.+|.++|...+.+.+
T Consensus 397 l~~~~~~~~~tIG~iGl~E~~~~~~G~~~~~~~~~~~~~~~~~~~~~~il~~mr~~~~~~~ 457 (625)
T PRK08579 397 LEEFPSSHFNTIGIIGLPEAAAIYLGEPKLWTEGSRRDWLEAAELMKKMVEFAVEKAREWM 457 (625)
T ss_pred chhhhhCCEEEEEeehHHHHHHHHcCCCcccccCChhhhHHHHHHHHHHHHHHHHHHHHHH
Confidence 1111 333479999999999865 6643 4567899999999999997776544
No 47
>COG1327 Predicted transcriptional regulator, consists of a Zn-ribbon and ATP-cone domains [Transcription]
Probab=96.79 E-value=0.0028 Score=61.26 Aligned_cols=72 Identities=21% Similarity=0.293 Sum_probs=54.4
Q ss_pred eEEecCCceeecChHHHHHHHHHHHccCCCCCCCHH---HHHHHHHhhcCC----CCCHHHHHHHHHHHHHhhccCCCCh
Q 003561 2 YVVKRDGRQEAVHFDKITARLKKLSYGLSTEHCDPV---LVSQKVCAGVYK----GVTTSQLDELAAETAAAMTTNHPDY 74 (811)
Q Consensus 2 ~V~KrdG~~e~~~~~ki~~~i~~~~~~l~~~~v~~~---~i~~~~~~~l~~----gitt~ei~~~~~~~a~~~~~~~p~y 74 (811)
.|||+||++||||.+||.+-+..||+.=+ |+.+ .++..+..+|.. .|++++|=+++.+....+ ++=.|
T Consensus 50 ~VvKkdg~Re~F~r~Kl~~gl~~A~~KRp---Vs~e~ie~~v~~ie~~Lr~~g~~EV~S~~IG~~VM~~Lk~l--D~VAY 124 (156)
T COG1327 50 IVVKKDGRREPFDREKLRRGLIRACEKRP---VSSEQIEEAVSHIERQLRSSGEREVPSKEIGELVMEELKKL--DEVAY 124 (156)
T ss_pred eEECcCCCcCCCCHHHHHHHHHHHHhcCC---CCHHHHHHHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHhc--chhhh
Confidence 48999999999999999999999999865 6654 455566666643 589999999888877555 33344
Q ss_pred HHHH
Q 003561 75 ASLA 78 (811)
Q Consensus 75 ~~lA 78 (811)
-.+|
T Consensus 125 vRFA 128 (156)
T COG1327 125 VRFA 128 (156)
T ss_pred hhhh
Confidence 4443
No 48
>PRK08271 anaerobic ribonucleoside triphosphate reductase; Provisional
Probab=95.63 E-value=0.041 Score=65.79 Aligned_cols=107 Identities=22% Similarity=0.354 Sum_probs=77.3
Q ss_pred cceeEEecccccchhcccCCCCCCCCCccccccCCCCCccCCHHHHHHHHHHHHH-------HHHHHHhcCCCcHHHHHH
Q 003561 440 ETAVCNLASIALPRFVREKDVPVESHPSRIVGSRGSKNRFFDFEKLAEVTAIVTE-------NLNKIIDVNYYPVETARR 512 (811)
Q Consensus 440 e~~~CNL~SInL~~~v~~~~~~~~~~~~~~~g~~~~~~~~fD~~~L~~~v~~avr-------~LD~vId~~~~p~~~~~~ 512 (811)
-+++++-.||||++..-.. .+...| |+.|++.+.++.+ .|...+....+|+-...-
T Consensus 347 ~tGSigVVTINLPRia~~a----------------~~~~~F-~e~Ld~~lela~~~l~~~R~~l~~~~~~~~~P~~~~~~ 409 (623)
T PRK08271 347 NTGSINVITINLPRIAQEA----------------RDRDDF-LEILRERVDKIHKYQLAYREIMEERIAAGMLPLYDAGF 409 (623)
T ss_pred ccCCcceEEccHHHHHHHc----------------CCHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHhcCCChHHHhhh
Confidence 3567778899999986431 111122 4667777776655 355566777888765433
Q ss_pred HhhccCCeeeecchHHHHHHHcCCC-CCCHHHHHHHHHHHHHHHHHHHHHHH
Q 003561 513 SNLRHRPIGIGVQGLADTFILLGMA-FESPEAQQLNKDIFETIYYHALKTSS 563 (811)
Q Consensus 513 ~~~~~R~iGlGv~Glad~L~~~gi~-y~S~ea~~l~~~i~e~i~~~a~~aS~ 563 (811)
...+..-+-||+.||+.++..+|.. .+++|+.+|+.+|.++|+..+.+.+.
T Consensus 410 ~~l~~~f~TIGiiGl~Ea~~~~G~~~~~~~e~~~f~~~il~~mr~~~~~~~~ 461 (623)
T PRK08271 410 ISLDKQFLTIGINGMVEAAEFMGLTVGYNEEYKDFVQEVLKVIYEANEKASK 461 (623)
T ss_pred cccccceEeeeHhhHHHHHHHhCCCCCCCHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3234445899999999999989988 78999999999999999988887663
No 49
>PRK07207 ribonucleotide-diphosphate reductase subunit alpha; Validated
Probab=95.55 E-value=0.04 Score=69.14 Aligned_cols=64 Identities=11% Similarity=0.144 Sum_probs=46.4
Q ss_pred CeEEecCCceeecChHHHHHHHHHHHccCCCCC--------CCHHHHHHHHHhhcC------CCCCHHHHHHHHHHHH
Q 003561 1 MYVVKRDGRQEAVHFDKITARLKKLSYGLSTEH--------CDPVLVSQKVCAGVY------KGVTTSQLDELAAETA 64 (811)
Q Consensus 1 ~~V~KrdG~~e~~~~~ki~~~i~~~~~~l~~~~--------v~~~~i~~~~~~~l~------~gitt~ei~~~~~~~a 64 (811)
|.|+||||+.++||.+||..+|.+|..-++... -....+..+|...+. +.++.+|||+++.++.
T Consensus 34 ~~VIKRDG~~v~Fd~~KI~~AI~KA~~av~~~~~~~~~~~~~~~~~l~~~V~~~l~~~~~~~~~vsVEeIQD~VE~~L 111 (965)
T PRK07207 34 YKVIRRNGSVVPFEPSKIAVAMTKAFLAVEGGQAAASARVRETVEQLTEQVVRALVRRRPSGGTFHIEDIQDQVELAL 111 (965)
T ss_pred eEEEecCCccCCCCHHHHHHHHHHHHHhhccccccccchhhHHHHHHHHHHHHHHHHhccCCCCCCHHHHHHHHHHHH
Confidence 689999999999999999999999876442110 112345555555443 2699999999887766
No 50
>TIGR02827 RNR_anaer_Bdell anaerobic ribonucleoside-triphosphate reductase. Members of this family belong to the class III anaerobic ribonucleoside-triphosphate reductases (RNR). These glycine-radical-containing enzymes are oxygen-sensitive and operate under anaerobic conditions. The genes for this family are pair with genes for an acitivating protein that creates a glycine radical. Members of this family, though related, fall outside the scope of TIGR02487, a functionally equivalent protein set; no genome has members in both familes. Identification as RNR is supported by gene pairing with the activating protein, lack of other anaerobic RNR, and presence of an upstream regulatory element strongly conserved upstream of most RNR operons.
Probab=94.83 E-value=0.38 Score=57.32 Aligned_cols=108 Identities=19% Similarity=0.288 Sum_probs=78.0
Q ss_pred CcceeEEecccccchhcccCCCCCCCCCccccccCCCCCccCCHHHHHHHHHHHH----HHHHHHHhcCCCcHHHHHHHh
Q 003561 439 TETAVCNLASIALPRFVREKDVPVESHPSRIVGSRGSKNRFFDFEKLAEVTAIVT----ENLNKIIDVNYYPVETARRSN 514 (811)
Q Consensus 439 ~e~~~CNL~SInL~~~v~~~~~~~~~~~~~~~g~~~~~~~~fD~~~L~~~v~~av----r~LD~vId~~~~p~~~~~~~~ 514 (811)
.-+++++--+|||++..-.. =|++++-++++-+. ..|...++.+.||+-......
T Consensus 319 ~~tGSigVVTINLPRia~~a---------------------~~L~~~l~la~~~L~~kr~~l~~~~~~g~~P~~~~~~~~ 377 (586)
T TIGR02827 319 VATGSINVITINMNRLVQDS---------------------RDLAHEVEKIHKYQVAYRELMKEYLAAGLLPLYDAGFIT 377 (586)
T ss_pred CcccccceEEecHHHHHHHh---------------------CCHHHHHHHHHHHHHHHHHHHHHHhhccCcHHHHhhhcc
Confidence 35678888899999986431 12444444444322 246666777889976654444
Q ss_pred hccCCeeeecchHHHHHHHcCCC-CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCC
Q 003561 515 LRHRPIGIGVQGLADTFILLGMA-FESPEAQQLNKDIFETIYYHALKTSSEIAAKEGP 571 (811)
Q Consensus 515 ~~~R~iGlGv~Glad~L~~~gi~-y~S~ea~~l~~~i~e~i~~~a~~aS~eLAke~G~ 571 (811)
.+..-.-||+.||+.++..+|.. -+|+|+.+|+.+|.++|+..+.+.+ +|.|-
T Consensus 378 ~~~~f~TIGiiGl~Ea~~~~G~~~~~~~e~~~fa~~vl~~mr~~~~~~~----~etG~ 431 (586)
T TIGR02827 378 LDKQFLTIGINGMVEAAEFMGLTVGYNEEYKDFVQNVLKVIYEANQKAY----HEYGF 431 (586)
T ss_pred cccceEeeeHhhHHHHHHHhCCCCCCCHHHHHHHHHHHHHHHHHHHHHH----HHHCC
Confidence 45556899999999999888988 5799999999999999998887665 45554
No 51
>PRK12365 ribonucleotide-diphosphate reductase subunit alpha; Provisional
Probab=94.53 E-value=0.089 Score=66.78 Aligned_cols=64 Identities=16% Similarity=0.144 Sum_probs=45.4
Q ss_pred CeEEecCCceeecChHHHHHHHHHHHccCCCCC----C---C---H----HHHHHHHHhhcC--CCCCHHHHHHHHHHHH
Q 003561 1 MYVVKRDGRQEAVHFDKITARLKKLSYGLSTEH----C---D---P----VLVSQKVCAGVY--KGVTTSQLDELAAETA 64 (811)
Q Consensus 1 ~~V~KrdG~~e~~~~~ki~~~i~~~~~~l~~~~----v---~---~----~~i~~~~~~~l~--~gitt~ei~~~~~~~a 64 (811)
|+|+||||+.++||.+||..+|++|...+.... . + . ..++..+...+. ..++.++||++...+.
T Consensus 9 ~~ViKRDG~~v~Fd~~KI~~AI~kA~~a~~~~~~~~~~~~~~~~~~~~~~~~v~~~i~~~i~~~~~vsVEeIQDmVE~~L 88 (1046)
T PRK12365 9 YTIVKRNGMFVPFNQNRIFQALEAAFRDTRSLEDHSPLPEDLESSIRSITHQVVKEVVQKITEGQVVTVERIQDMVESQL 88 (1046)
T ss_pred eEEEecCCccCCCCHHHHHHHHHHHHHhhccccccccccchhHHHHHHHHHHHHHHHHHHhccCCCCCHHHHHHHHHHHH
Confidence 479999999999999999999999876542100 0 0 1 234445555443 3699999999887665
No 52
>PF11230 DUF3029: Protein of unknown function (DUF3029); InterPro: IPR016905 Members of this family are homologs to enzymes known to undergo activation by a radical SAM protein to create an active site glycyl radical. This family appears to be activated by the YjjW radical SAM protein, usually encoded by an adjacent gene.
Probab=89.95 E-value=7.5 Score=44.47 Aligned_cols=264 Identities=16% Similarity=0.165 Sum_probs=166.0
Q ss_pred EEEeHHHHHHHHHHHHHhhCCceeEehhhhhhhc-CCCCCCceeeecCCccccccCCCCcceeEEecccccchhcccCCC
Q 003561 382 KVVQAQNLWFEILTSQIETGTPYMLFKDTCNRKS-NQQNLGTIKSSNLCTEIIEYTSPTETAVCNLASIALPRFVREKDV 460 (811)
Q Consensus 382 ~~v~Ar~L~~~I~~~~~etG~P~i~f~D~~Nr~~-~~~~~g~I~~sNlC~EI~~~~~~~e~~~CNL~SInL~~~v~~~~~ 460 (811)
..+...++..+.++++.+++.|-+.+- .+++.. .....|.+.|=| .+ +- --+...|.-+||.+.....
T Consensus 173 ~~~Tpdd~~~~A~~~~l~csKP~faN~-~~~~~~~~~~~ygIvSCYN----~L-p~---~GGa~TLvRlnL~~vA~~a-- 241 (487)
T PF11230_consen 173 PEITPDDFAEQAIENILECSKPHFANH-PMHRKDFGEGDYGIVSCYN----SL-PL---GGGAYTLVRLNLKEVAKRA-- 241 (487)
T ss_pred CCCCcHHHHHHHHHHHHhcCCchhcCC-HhHHHhcCCCCeeEEEecc----cc-cc---CCcchhhhhhhHHHHHHHc--
Confidence 456778999999999999999999743 233332 112345444434 22 11 1345778889998876531
Q ss_pred CCCCCCccccccCCCCCccCCHHHHHHHHHHHHHHHHHHHhc-----CCCc----HHHHHHHhhccCCee-eecchHHHH
Q 003561 461 PVESHPSRIVGSRGSKNRFFDFEKLAEVTAIVTENLNKIIDV-----NYYP----VETARRSNLRHRPIG-IGVQGLADT 530 (811)
Q Consensus 461 ~~~~~~~~~~g~~~~~~~~fD~~~L~~~v~~avr~LD~vId~-----~~~p----~~~~~~~~~~~R~iG-lGv~Glad~ 530 (811)
.+...|=-+.|-+.+..+.+++|.=|.. ++|. +.|- -.++.|=.| -|+.|||+.
T Consensus 242 --------------~~~~dF~~~~LP~~~~~~~~~md~R~~flvEeS~FFessFLvkEG--lI~~~rF~~MFGi~GlAEa 305 (487)
T PF11230_consen 242 --------------KDIEDFLNNVLPYYCDLMLEYMDARIRFLVEESNFFESSFLVKEG--LIERDRFTPMFGIVGLAEA 305 (487)
T ss_pred --------------CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccccccchhhhcc--ccchhhcchHhHHHHHHHH
Confidence 1111122256778888888888876542 3332 2221 123445555 499999986
Q ss_pred HH----HcCC--CCC-CHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCCCCCCccccCCCCccccccCCCCcccHHHH
Q 003561 531 FI----LLGM--AFE-SPEAQQLNKDIFETIYYHALKTSSEIAAKEGPYETYHNSPVSKGILQPDMWNVIPSDRWDWGVL 603 (811)
Q Consensus 531 L~----~~gi--~y~-S~ea~~l~~~i~e~i~~~a~~aS~eLAke~G~~~~f~~S~~~~G~l~~d~~~~~~~~~~dW~~L 603 (811)
.. +-|. .|+ |++|-+|..+|++.|... .+.. | .+|+.|+
T Consensus 306 VN~Ll~~eg~~~~yG~~~~An~Lg~~I~~~l~~~--------V~~~---~----~~y~~~~------------------- 351 (487)
T PF11230_consen 306 VNILLEKEGKEERYGHDEEANELGVRIMEKLAEI--------VKSH---P----VKYCEGT------------------- 351 (487)
T ss_pred HHHHHhccCCccccCCChHHHHHHHHHHHHHHHH--------HhcC---C----Ccccccc-------------------
Confidence 33 3344 786 788999999999877632 2211 1 1222221
Q ss_pred HHHHHhcCccccceeccCCCCccccccCCCccccccccceeEEEcccCceEEeChHHHHHHHHcCCCcHHHhhhhhccCC
Q 003561 604 RDMISKNGVRNSLLVAPMPTASTSQILGNNECFEPYTSNIYSRRVLSGEFVVVNKHLLHDLTEMGIWSPTIKNKIIYDDG 683 (811)
Q Consensus 604 r~~i~~~G~RNs~l~AiaPT~stS~i~g~s~gieP~~s~~y~r~~~~g~~~~vn~~l~~~l~~~g~~~~~~~~~i~~~~G 683 (811)
.| ...|-|+ .| +|.=.|+|+|+.=++
T Consensus 352 ------~g--r~lLHAQ--vG-i~~D~~~TPG~RIp~------------------------------------------- 377 (487)
T PF11230_consen 352 ------GG--RFLLHAQ--VG-ISSDKGVTPGVRIPY------------------------------------------- 377 (487)
T ss_pred ------CC--EEEEEec--cC-ccccCCCCCCCcCcC-------------------------------------------
Confidence 01 1122332 12 344467777743111
Q ss_pred cccccCCCchHHHhhhhhhccCChHHHHHHHHHhccccccccceeEeeCC---CCHHHHHHHHHHHHHcCCceEEEEecC
Q 003561 684 SVQKIPEIPEELKMIYKTVWEIKQMTLVDMAVDRGCYIDQSQSLNIHMDQ---PNFKKVTSLHFRTWSRGLKTGMYYLRS 760 (811)
Q Consensus 684 sv~~i~~~p~~~k~~f~ta~ei~~~~~i~~~a~~Q~~vDqs~S~~l~~~~---~~~~~l~~~~~~Awk~GlKt~~YY~r~ 760 (811)
.-|-++-+||...|...+|-..++|=-+-+++ .+++.+.++..=|++.|.+=.+.|.-+
T Consensus 378 ------------------G~EP~~~~hl~~~A~~H~yfpsGi~DIf~~d~T~k~NP~A~ldi~kGAf~~G~Ryfs~y~~~ 439 (487)
T PF11230_consen 378 ------------------GEEPDLVDHLQASAPFHKYFPSGIGDIFTFDETVKNNPEALLDICKGAFSLGMRYFSAYVSD 439 (487)
T ss_pred ------------------CCCCCHHHHHHHhcccccCCCCCcccccccchhhHhCHHHHHHHHHHHHhcCCeEEEEecCC
Confidence 11223456889999999999999997666764 456788999999999999999999988
Q ss_pred cccccccccccccccccc
Q 003561 761 RAAADAIKFTVDTSVFKE 778 (811)
Q Consensus 761 ~~~~~~~~~~~~~~~~~~ 778 (811)
..--+...+.|.++.++.
T Consensus 440 sDlVRVTGYlVK~SdieK 457 (487)
T PF11230_consen 440 SDLVRVTGYLVKRSDIEK 457 (487)
T ss_pred CceEEEeeeeehhhhHHH
Confidence 888888888888876654
No 53
>COG1328 NrdD Oxygen-sensitive ribonucleoside-triphosphate reductase [Nucleotide transport and metabolism]
Probab=73.30 E-value=8 Score=47.18 Aligned_cols=61 Identities=23% Similarity=0.316 Sum_probs=44.0
Q ss_pred eEEecCCceeecChHHHHHHHHHHHccCCCCCCCH---H----HHHHHHHhhcCCCCCHHHHHHHHHHHHH
Q 003561 2 YVVKRDGRQEAVHFDKITARLKKLSYGLSTEHCDP---V----LVSQKVCAGVYKGVTTSQLDELAAETAA 65 (811)
Q Consensus 2 ~V~KrdG~~e~~~~~ki~~~i~~~~~~l~~~~v~~---~----~i~~~~~~~l~~gitt~ei~~~~~~~a~ 65 (811)
.|+||||++.+||..||..+|.++.+-.+. .|. . .|.+++.. +...+..+++|..+.....
T Consensus 4 ~vikrDg~~~~fd~~~i~~ai~~a~~~~~~--~d~~~~~~~~~~i~~~i~~-~~~~~~i~~iq~~ve~~l~ 71 (700)
T COG1328 4 VVIKRDGRVAEFDRNKIINAVRKAAKEIES--FDIAKALIRATGVDEEVAR-IAREVEIEEIQLLVEYLLM 71 (700)
T ss_pred eeEeeccccccchHHHHHHHHHHHHHhhcc--ccHHHHHHHHHHHHHHHhh-HhhhhhHHHHHHHHHHHHH
Confidence 589999999999999999999999876542 231 1 23444444 4567777788877666553
No 54
>PF04282 DUF438: Family of unknown function (DUF438); InterPro: IPR007380 This is a a group of uncharacterised proteins.
Probab=59.21 E-value=21 Score=30.75 Aligned_cols=43 Identities=14% Similarity=0.210 Sum_probs=31.6
Q ss_pred ChHHHHHHHHHHHccCCCCCCCHHHHHHHHHhhcCCCCCHHHHHHHHH
Q 003561 14 HFDKITARLKKLSYGLSTEHCDPVLVSQKVCAGVYKGVTTSQLDELAA 61 (811)
Q Consensus 14 ~~~ki~~~i~~~~~~l~~~~v~~~~i~~~~~~~l~~gitt~ei~~~~~ 61 (811)
|++.+++...+.-.+ |++.+|...=..-+.+||+.+||+.++=
T Consensus 14 ~~e~vk~~F~~~~~~-----Vs~~EI~~~Eq~Li~eG~~~eeiq~LCd 56 (71)
T PF04282_consen 14 DPEEVKEEFKKLFSD-----VSASEISAAEQELIQEGMPVEEIQKLCD 56 (71)
T ss_pred CHHHHHHHHHHHHCC-----CCHHHHHHHHHHHHHcCCCHHHHHHHhH
Confidence 678888888877655 6777766544444559999999999864
No 55
>COG1328 NrdD Oxygen-sensitive ribonucleoside-triphosphate reductase [Nucleotide transport and metabolism]
Probab=49.18 E-value=55 Score=40.18 Aligned_cols=45 Identities=31% Similarity=0.307 Sum_probs=36.7
Q ss_pred ccCCeeeecchHHHHHHHcCC--CCCCHHHHHHHHHHHHHHHHHHHH
Q 003561 516 RHRPIGIGVQGLADTFILLGM--AFESPEAQQLNKDIFETIYYHALK 560 (811)
Q Consensus 516 ~~R~iGlGv~Glad~L~~~gi--~y~S~ea~~l~~~i~e~i~~~a~~ 560 (811)
..-.+.+|..|++.++..+.- -++++||.++..++.+.|+.++.+
T Consensus 480 ~~~t~s~g~igl~E~l~~~~g~~~~~~~ea~~~~~~iv~~~~~~~~~ 526 (700)
T COG1328 480 GRATISLGFIGLNEMLKYLTGEHLHESEEAKKFGIKIVEYIREYADK 526 (700)
T ss_pred ccceEEEeecchHHHHHHhcCCCcccCHHHHHHHHHHHHHHHHHHHH
Confidence 345689999999999987643 236999999999999999987764
No 56
>COG2099 CobK Precorrin-6x reductase [Coenzyme metabolism]
Probab=39.49 E-value=32 Score=36.88 Aligned_cols=81 Identities=21% Similarity=0.306 Sum_probs=55.7
Q ss_pred eecchHHHHHHHcCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhC-CCCCCCCCccccCCCCccccccCCCCcccH
Q 003561 522 IGVQGLADTFILLGMAFESPEAQQLNKDIFETIYYHALKTSSEIAAKEG-PYETYHNSPVSKGILQPDMWNVIPSDRWDW 600 (811)
Q Consensus 522 lGv~Glad~L~~~gi~y~S~ea~~l~~~i~e~i~~~a~~aS~eLAke~G-~~~~f~~S~~~~G~l~~d~~~~~~~~~~dW 600 (811)
+|.-||+.+|..+++..==+...=++.+| ..+ .++.|||.| ||=.|++-+|... .|.|.. -.||
T Consensus 53 l~~e~l~~~l~e~~i~llIDATHPyAa~i----S~N----a~~aake~gipy~r~eRP~~~~~---gd~~~~----V~d~ 117 (257)
T COG2099 53 LGAEGLAAFLREEGIDLLIDATHPYAARI----SQN----AARAAKETGIPYLRLERPPWAPN---GDNWIE----VADI 117 (257)
T ss_pred CCHHHHHHHHHHcCCCEEEECCChHHHHH----HHH----HHHHHHHhCCcEEEEECCccccC---CCceEE----ecCH
Confidence 78899999999999976333333344443 333 457799999 8999999999763 343432 2479
Q ss_pred HHHHHHHHhcCcccccee
Q 003561 601 GVLRDMISKNGVRNSLLV 618 (811)
Q Consensus 601 ~~Lr~~i~~~G~RNs~l~ 618 (811)
+++-+-+++.| |+-.++
T Consensus 118 ~ea~~~~~~~~-~rVflt 134 (257)
T COG2099 118 EEAAEAAKQLG-RRVFLT 134 (257)
T ss_pred HHHHHHHhccC-CcEEEe
Confidence 99988888887 444443
No 57
>PF03847 TFIID_20kDa: Transcription initiation factor TFIID subunit A; InterPro: IPR003228 Human transcription initiation factor TFIID is composed of the TATA-binding polypeptide (TBP) and at least 13 TBP-associated factors (TAFs) that collectively or individually are involved in activator-dependent transcription [].; GO: 0006352 transcription initiation, DNA-dependent, 0005669 transcription factor TFIID complex; PDB: 1H3O_B.
Probab=36.56 E-value=77 Score=27.09 Aligned_cols=32 Identities=9% Similarity=0.242 Sum_probs=28.1
Q ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCC
Q 003561 540 SPEAQQLNKDIFETIYYHALKTSSEIAAKEGP 571 (811)
Q Consensus 540 S~ea~~l~~~i~e~i~~~a~~aS~eLAke~G~ 571 (811)
.+++.++.-+|++..-...+..|+.|||.||.
T Consensus 19 d~~vee~Ll~laddFv~~v~~~ac~lAKhR~s 50 (68)
T PF03847_consen 19 DPDVEELLLELADDFVDDVVSFACRLAKHRKS 50 (68)
T ss_dssp -HHHHHHHHHHHHHHHHHHHHHHHHHHHHTT-
T ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHHHhccCC
Confidence 47789999999999999999999999999986
No 58
>PRK15329 chaperone protein SicP; Provisional
Probab=34.19 E-value=46 Score=32.36 Aligned_cols=29 Identities=24% Similarity=0.475 Sum_probs=26.3
Q ss_pred EEeHHHHHHHHH---HHHHhhCCceeEehhhh
Q 003561 383 VVQAQNLWFEIL---TSQIETGTPYMLFKDTC 411 (811)
Q Consensus 383 ~v~Ar~L~~~I~---~~~~etG~P~i~f~D~~ 411 (811)
.+.+.++|++++ ....+.|.|.+.|.|..
T Consensus 57 ~~~~~~i~~~~l~~N~~l~e~g~g~l~y~e~~ 88 (138)
T PRK15329 57 PVAGDSIWRQILVINLELAENGEGTLAYIDAA 88 (138)
T ss_pred cchHHHHHHHHHHHHHHHHhCCCceEEEcccC
Confidence 556899999999 99999999999999976
No 59
>cd07981 TAF12 TATA Binding Protein (TBP) Associated Factor 12 (TAF12) is one of several TAFs that bind TBP and is involved in forming Transcription Factor IID (TFIID) complex. The TATA Binding Protein (TBP) Associated Factor 12 (TAF12) is one of several TAFs that bind TBP and are involved in forming the TFIID complex. TFIID is one of the seven General Transcription Factors (GTFs) (TFIIA, TFIIB, TFIID, TFIIE, TFIIF, and TFIID) that are involved in accurate initiation of transcription by RNA polymerase II in eukaryotes. TFIID plays an important role in the recognition of promoter DNA and assembly of the pre-initiation complex. TFIID complex is composed of the TBP and at least 13 TAFs. TAFs are named after their electrophoretic mobility in polyacrylamide gels in different species. A new, unified nomenclature has been suggested for the pol II TAFs to show the relationship between TAF orthologs and paralogs. Several hypotheses are proposed for TAFs function such as serving as activator-bind
Probab=31.81 E-value=99 Score=26.52 Aligned_cols=33 Identities=12% Similarity=0.252 Sum_probs=30.3
Q ss_pred CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCC
Q 003561 539 ESPEAQQLNKDIFETIYYHALKTSSEIAAKEGP 571 (811)
Q Consensus 539 ~S~ea~~l~~~i~e~i~~~a~~aS~eLAke~G~ 571 (811)
=+++|.++..++.|.......+.|++|||.+|.
T Consensus 20 ~~~da~~~l~~~~e~fv~~v~~~a~~lAkHr~~ 52 (72)
T cd07981 20 LDPDVEELLLEIADDFVDDVVEDACRLAKHRKS 52 (72)
T ss_pred cCHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCC
Confidence 368899999999999999999999999999886
No 60
>PF14698 ASL_C2: Argininosuccinate lyase C-terminal; PDB: 1XWO_A 2E9F_A 1TJW_C 1TJU_A 1DCN_B 1K7W_B 1HY1_C 1TJV_B 1AUW_A 1U15_B ....
Probab=22.33 E-value=1.2e+02 Score=25.87 Aligned_cols=15 Identities=33% Similarity=0.592 Sum_probs=12.6
Q ss_pred cchHHHHHHHcCCCC
Q 003561 524 VQGLADTFILLGMAF 538 (811)
Q Consensus 524 v~Glad~L~~~gi~y 538 (811)
.+-|||+|.+.|+||
T Consensus 4 ATdlAD~LVr~GipF 18 (70)
T PF14698_consen 4 ATDLADYLVRKGIPF 18 (70)
T ss_dssp HHHHHHHHHHTTS-H
T ss_pred HHHHHHHHHHcCCCH
Confidence 467999999999999
Done!