Query 003561
Match_columns 811
No_of_seqs 242 out of 1652
Neff 6.7
Searched_HMMs 29240
Date Tue Mar 26 18:00:21 2013
Command hhsearch -i /local_scratch/syshi/lefta3m/003561.a3m -d /local_scratch/syshi/pdb70.hhm -v 0 -o /local_scratch/syshi/H1_1610-1613//hhsearch_pdb/003561hhsearch_pdb
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3hnc_A Ribonucleoside-diphosph 1.0 1 1 1783.8 69.3 792 1-811 1-792 (792)
2 3k8t_A Ribonucleoside-diphosph 1.0 1 1 1758.5 59.6 760 1-775 1-760 (888)
3 2wgh_A Ribonucleoside-diphosph 1.0 1 1 1511.5 60.2 671 75-764 2-672 (676)
4 2xap_A Ribonucleoside-diphosph 1.0 1 1 1508.6 59.0 702 1-768 5-742 (761)
5 1peq_A Ribonucleoside-diphosph 1.0 1 1 1333.2 45.0 635 67-766 9-702 (714)
6 3o0q_A Ribonucleoside-diphosph 1.0 1 1 1291.4 51.2 577 131-766 3-637 (644)
7 1l1l_A Ribonucleoside triphosp 1.0 1 1 916.6 31.1 510 127-764 11-684 (739)
8 1dq3_A Endonuclease; PI-PFUI, 1.0 1 1 67.7 -12.4 68 248-316 1-68 (454)
9 1h7b_A Anaerobic ribonucleotid 1.0 1 1 30.3 16.8 251 387-752 251-532 (605)
10 1h3o_B Transcription initiatio 1.0 1 1 14.8 5.3 32 540-571 25-56 (76)
No 1
>3hnc_A Ribonucleoside-diphosphate reductase large subuni; oxidoreductase, ribonucleotide reductase, allosteric enzyme, binding, DNA replication; HET: TTP; 2.41A {Homo sapiens} PDB: 3hnd_A* 3hne_A* 3hnf_A*
Probab=1.00 E-value=1 Score=1783.76 Aligned_cols=792 Identities=68% Similarity=1.136 Sum_probs=761.4
Q ss_pred CEEEECCCCEEECCHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHCCCCCCHHHHHHH
Q ss_conf 95880399352138679999999988039999879787999998110899998899999999998632289983999999
Q 003561 1 MYVVKRDGRQEAVHFDKITARLKKLSYGLSTEHCDPVLVSQKVCAGVYKGVTTSQLDELAAETAAAMTTNHPDYASLAAR 80 (811)
Q Consensus 1 ~~V~KrdG~~e~~~~~ki~~~i~~~~~~l~~~~v~~~~i~~~~~~~~~d~itt~ei~~~li~~a~~~~~~~p~y~~lA~R 80 (811)
|+|+||||++|||+++||+++|+++|+||+.++||+++|+.++..+++|||||+||++++|++|++|+++||||+++|||
T Consensus 1 ~~v~kr~G~~e~~~~~ki~~~i~~~~~gl~~~~v~~~~i~~~~~~~~~~gitt~el~~~~~~~a~~~~~~~pdy~~~AaR 80 (792)
T 3hnc_A 1 MHVIKRDGRQERVMFDKITSRIQKLCYGLNMDFVDPAQITMKVIQGLYSGVTTVELDTLAAETAATLTTKHPDYAILAAR 80 (792)
T ss_dssp -------------CHHHHHHHHHTTCTTSCTTTCCHHHHHHHHHTTCCTTCCHHHHHHHHHHHHHHGGGTCTHHHHHHHH
T ss_pred CEEEECCCCEEECCHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHCCCCHHHHHHH
T ss_conf 94894699454368999999999996467855679999999998534699998999999999999865539878999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCHHHHHHHHHCHHHHHHHHCCCCCCCCCHHHHHHHHHHHCCCCC
Q ss_conf 99998878841212599999997612102876557674799999961999977620124689980569999986236349
Q 003561 81 IAVSNLHKNTKKSFSETIKDMYNHYNERSGLKAPLIADDIYEIIMKNAACLDSEIIYDRDFDYDYFGFKTLERSYLLKVQ 160 (811)
Q Consensus 81 l~~~~l~k~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~l~~~i~~~rd~~~~y~g~~~l~~~Yllk~~ 160 (811)
|++++|||++.+.|++.+.++|.++++++|...+++++++++++++|+++|++.|+|+||+.|+|+|+++|+++||+|.+
T Consensus 81 l~~~~l~k~~~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~i~~~rD~~f~y~g~~~L~~rYllk~~ 160 (792)
T 3hnc_A 81 IAVSNLHKETKKVFSDVMEDLYNYINPHNGKHSPMVAKSTLDIVLANKDRLNSAIIYDRDFSYNYFGFKTLERSYLLKIN 160 (792)
T ss_dssp HHHHHHHHTSCSCHHHHHHHHHSCBCTTTCCBCCSSCHHHHHHHHHTHHHHHHHCCGGGGGGSCHHHHHHHHHHTSCEET
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHHHHHCHHHHCCCCHHHHHHHHHCCCCCCC
T ss_conf 99999999998887788999999877751455342376899999999999997758443348986899999961562529
Q ss_pred CCCCCCHHHHHHHHHHHHCCCCHHHHHHHHHHHHCCCEECCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHH
Q ss_conf 92148989999999967304898999999999753908616610014688888877632212348988889999999999
Q 003561 161 GKVVERPQHMLMRVSIGIHKDDIDSAIKTYHMMSQRWFTHASPTLFNAGTPRPQLSSCFLVCMKDDSIEGIYETLKECAV 240 (811)
Q Consensus 161 g~~~E~pq~~~~rvA~~l~~~~~~~~~~~y~~ls~~~~~~atP~l~naGt~~~~lsSCfl~~~~~Ds~~~I~~~~~~~a~ 240 (811)
|+++|+||+||||||++++.++++++++||++||+++|+||||||+|+||+++|||||||+++++||++||+++++++++
T Consensus 161 g~~~E~pq~~~~rVA~~l~~~~~~~a~~~y~~ls~~~f~~aTPtl~NaGt~~~qlsSCFl~~v~~Dsl~~I~~~~~~~a~ 240 (792)
T 3hnc_A 161 GKVAERPQHMLMRVSVGIHKEDIDAAIETYNLLSERWFTHASPTLFNAGTNRPQLSSCFLLSMKDDSIEGIYDTLKQCAL 240 (792)
T ss_dssp TEECCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTSEEECHHHHHHTTSSSCCCCCEEEEECCCSSHHHHHHHHHHHHH
T ss_pred CCEEECHHHHHHHHHHHHCCCCHHHHHHHHHHHHCCCCCCCCHHHHCCCCCCCCCCCEECCCCCCCCHHHHHHHHHHHHH
T ss_conf 98615799999999988600269999999999971770469826643899888777434137788669999999999999
Q ss_pred HHHHCCCCCEEECEECCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHCCCCCCCCEEEECCCCCCCHHHHHHHHHCCCC
Q ss_conf 99752974112001237998435888866774207999999999975189733463176136886338999981110783
Q 003561 241 ISKSAGGIGVSVHNIRATGSYIRGTNGTSNGIVPMLRVFNDTARYVDQGGGKRKGAFAVYLEPWHADIFEFLNLKKNHGK 320 (811)
Q Consensus 241 isk~ggGvG~~~s~iR~~Gs~I~g~~g~ssG~vp~lk~~~~~~~~v~qgG~~R~Ga~~vyl~~wH~DI~~fl~~K~~~g~ 320 (811)
++|.|||||+|+|+|||+|++|+|++|+|||||||||+||+++.+|+|||++|+||+|+||++|||||++||++|+++|+
T Consensus 241 isk~GGGiG~~~s~iR~~Gs~I~g~~g~ssG~vpfmk~~d~~~~~v~QgG~~R~GA~~vyL~~wHpDI~eFl~~K~~~g~ 320 (792)
T 3hnc_A 241 ISKSAGGIGVAVSCIRATGSYIAGTNGNSNGLVPMLRVYNNTARYVDQGGNKRPGAFAIYLEPWHLDIFEFLDLKKNTGK 320 (792)
T ss_dssp HHHTTCEEEEECTTSCCTTCEETTTTEECCCSHHHHHHHHHHHHHCCCC------CEEEEECTTBTTHHHHTTSCC----
T ss_pred HHHHCCCCEEEEECCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHCCCCCCCCEEEEECCCCCCHHHHHHHHHCCCC
T ss_conf 98717975674101377788366889888985219998889999998089854663478955888349999997420570
Q ss_pred CCCCCCCCCEECCCCHHHHHHHHCCCCEEEECCCCCCCCHHHHHHHHHHHHHHHHHCCCEEEEEEHHHHHHHHHHHHHHH
Q ss_conf 21011234300124989899997199668766787796122231579999999986194038982899999999988852
Q 003561 321 EEHRARDLFYALWVPDLFMERVQTNGQWSLFCPNEASGLADCWGAEFEKLYTHYEREGKAKKVVQAQNLWFEILTSQIET 400 (811)
Q Consensus 321 ~~~r~~~l~~~v~i~d~Fm~rv~~~~~w~Lf~P~~~~~L~~~~g~eF~~~Y~~~e~~~~~~~~v~Ar~l~~~I~~~~~~t 400 (811)
+++|++++|+||||||+||+||++|++|+||+|+++|+|.++||++|+++|++||+++..+++|+||+||++|++++|+|
T Consensus 321 e~~r~~~l~~sv~ipD~Fm~~v~~d~~w~Lf~P~~~p~L~~~yg~ef~~~Y~~~e~~g~~~k~v~AreLw~~I~~~~~et 400 (792)
T 3hnc_A 321 EEQRARDLFFALWIPDLFMKRVETNQDWSLMCPNECPGLDEVWGEEFEKLYASYEKQGRVRKVVKAQQLWYAIIESQTET 400 (792)
T ss_dssp -----CCEEEEEEECHHHHHHHHTTCEEEEBCTTTSTTGGGCCHHHHHHHHHHHHHTTCCSEEEEHHHHHHHHHHHHHHH
T ss_pred HHHHHHHCCHHHEECHHHHHHHHCCCCEEEECCCCCCCHHHHHHHHHHHHHHHHHHCCCCEEEEEHHHHHHHHHHHHHHH
T ss_conf 76767647000022999999998599778767544762887752688999999986797306866999999999999996
Q ss_pred CCCEEEEHHHHHHHCCCCCCCCEEEECCCCCCCCCCCCCCCEEEEECCCCCCHHCCCCCCCCCCCCCCCCCCCCCCCCCC
Q ss_conf 87304720236531687888824421488523445899961358704456101000279887789864224579998667
Q 003561 401 GTPYMLFKDTCNRKSNQQNLGTIKSSNLCTEIIEYTSPTETAVCNLASIALPRFVREKDVPVESHPSRIVGSRGSKNRFF 480 (811)
Q Consensus 401 G~P~i~f~D~~Nr~~~~~~~g~I~~sNlC~EI~~~~~~~e~~~CnL~SInL~~~v~~~~~~~~~~~~~~~~~~~~~~~~f 480 (811)
|+|||+|+|+||++||+++.|+|++||||+||+||++++++++|||+||||++|+.. +..|
T Consensus 401 G~P~i~f~D~~N~~~~~~~~G~I~~SNlC~EI~~~~~~~e~~vCNLgSiNL~~~v~~-------------------~~~f 461 (792)
T 3hnc_A 401 GTPYMLYKDSCNRKSNQQNLGTIKCSNLCTEIVEYTSKDEVAVCNLASLALNMYVTS-------------------EHTY 461 (792)
T ss_dssp SCSEEEEHHHHHHTCTTGGGCCCCCCCSSSCCCCCCBTTBCEEECEEEEEGGGGBCT-------------------TSCB
T ss_pred CCCEEEEHHHHHHCCCCCCCCEEEEECCCCCCCCCCCCCCCCEEECHHCCHHHHHCC-------------------CCCC
T ss_conf 898143455687468887678389863714536789998642463212019988366-------------------6786
Q ss_pred CHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHCCCCEEEECCHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHHH
Q ss_conf 97899999999999999998408996799999861049703234039999999199999998899999999999999999
Q 003561 481 DFEKLAEVTAIVTENLNKIIDVNYYPVETARRSNLRHRPIGIGVQGLADTFILLGMAFESPEAQQLNKDIFETIYYHALK 560 (811)
Q Consensus 481 d~~~l~~~v~~avr~LD~vid~~~~p~~~~~~~~~~~R~iGiGv~Glad~L~~~gi~y~S~ea~~l~~~i~e~i~~~a~~ 560 (811)
||+.|+++|+++||+||+|||.+.||+|+++++|+++|+||||+|||||+|+++|++|+|+||++|+++|||.|+|+|++
T Consensus 462 D~~~l~~~v~~avr~Ld~vID~~~yP~~~~~~~~~~~R~IGLGvmGlad~L~~~gi~Y~S~ea~~~~~~i~e~i~~~A~~ 541 (792)
T 3hnc_A 462 DFKKLAEVTKVVVRNLNKIIDINYYPVPEACLSNKRHRPIGIGVQGLADAFILMRYPFESAEAQLLNKQIFETIYYGALE 541 (792)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHCCCSSHHHHHHHHHHCCCEEEEECHHHHHHHTTCCTTSHHHHHHHHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHCHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHHH
T ss_conf 99999999999999999999727883499999988706120068789999997699879999999999999999999999
Q ss_pred HHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHCCCCCCCEECCCCCCCCCCCCCCCCCCCCCC
Q ss_conf 99999998199999988966668777534456999713489999999842865441012599986000047975222355
Q 003561 561 TSSEIAAKEGPYETYHNSPVSKGILQPDMWNVIPSDRWDWGVLRDMISKNGVRNSLLVAPMPTASTSQILGNNECFEPYT 640 (811)
Q Consensus 561 aS~eLAke~G~~~~f~~S~~~~G~l~~d~~~~~~~~~~dW~~Lr~~i~~~GlRNs~l~AiaPT~s~S~i~g~s~gieP~~ 640 (811)
||++||+|+|+||.|++|+|++|++|||.|+..|+..+||++||++|++||+|||+++|||||||||+|+|+|+||||+|
T Consensus 542 aS~eLAkE~G~f~~f~~S~~~~G~~~~d~~~~~~~~~~dW~~Lr~~i~~~GlRNs~l~AiAPTgS~S~i~g~t~gIEP~~ 621 (792)
T 3hnc_A 542 ASCDLAKEQGPYETYEGSPVSKGILQYDMWNVTPTDLWDWKVLKEKIAKYGIRNSLLIAPMPTASTAQILGNNESIEPYT 621 (792)
T ss_dssp HHHHHHHHHCCCTTCTTSGGGGTCCHHHHTTCCCCTTSCHHHHHHHHHHHCCSCSCCBCCCCCHHHHHHHTCCCTTCCCS
T ss_pred HHHHHHHHHCCCCCCCCCCCCCCCCCHHHCCCCCHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCHHHHHCCCCCCCCCCH
T ss_conf 99999998598988777822135542333047845665499999999873665301205577504788708987528352
Q ss_pred CCEEEEECCCCCEEEECHHHHHHHHHCCCCCHHHHHHHHCCCCCCCCCCCCCHHHHHHHHHHCCCCHHHHHHHHHHHCCC
Q ss_conf 45067881457437848678999998599938876343416996013689966788601001027929899999983553
Q 003561 641 SNIYSRRVLSGEFVVVNKHLLHDLTEMGIWSPTIKNKIIYDDGSVQKIPEIPEELKMIYKTVWEIKQMTLVDMAVDRGCY 720 (811)
Q Consensus 641 s~~y~r~~~~g~~~~vn~~l~~~l~~~g~~~~~~~~~i~~~~Gsv~~i~~~p~~~k~~f~tA~ei~~~~~i~~~a~~Q~~ 720 (811)
+++|+|++.+|+|.++|++|+++|+++|+|++++++.|+.++||||++|.+|++++++|+|||||+|+++|+|+|++|||
T Consensus 622 s~~y~R~~~~G~~~~vn~~l~~~L~~~g~~~e~~~~~i~~~~Gsvq~i~~lp~~~~~~y~tA~eI~~~~~I~m~A~~Q~~ 701 (792)
T 3hnc_A 622 SNIYTRRVLSGEFQIVNPHLLKDLTERGLWHEEMKNQIIACNGSIQSIPEIPDDLKQLYKTVWEISQKTVLKMAAERGAF 701 (792)
T ss_dssp CSEEEEEETTEEEEEECHHHHHHHHHTTCCCHHHHHHHHHTTTCCTTCTTSCHHHHHHTCCTTTSCHHHHHHHHHHHHTT
T ss_pred HHHHHHHHCCCCEEEECHHHHHHHHHCCCCCHHHHHHHHHCCCCCCCCCCCCHHHHHHHHHHHHCCHHHHHHHHHHHCCC
T ss_conf 17999985058458647999999997499939999999864997136767997798884059738999999999997675
Q ss_pred CCCCCCEEEEECCCCHHHHHHHHHHHHHCCCCEEEEEECCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC
Q ss_conf 43464005740799987899999999984995489984475322221123233222458999865322100001133456
Q 003561 721 IDQSQSLNIHMDQPNFKKVTSLHFRTWSRGLKTGMYYLRSRAAADAIKFTVDTSVFKEKPEKPELVVDDETKMAQVVCSL 800 (811)
Q Consensus 721 vDQsiS~nl~~~~~~~~~i~~~~~~Awk~GlKt~~YY~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 800 (811)
||||||+|||+++++.++|.++|++|||+||||++||+|+++++++++|||++.......+.+..........++++|++
T Consensus 702 IDqs~S~tl~~~~~t~~~l~~~y~~Awk~GlKt~~YY~Rs~~a~~~~~~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 781 (792)
T 3hnc_A 702 IDQSQSLNIHIAEPNYGKLTSMHFYGWKQGLKTGMYYLRTRPAANPIQFTLNKEKLKDKEKVSKEEEEKERNTAAMVCSL 781 (792)
T ss_dssp CSSCCCCCEECSSCCHHHHHHHHHHHHHTTCSEEESCEECC---------------------------------------
T ss_pred CHHHCCCEEECCCCCHHHHHHHHHHHHHHCCCEEEEEECCCCHHHHHHHCCCHHHHCCCCCCCCCCCCCCCCCCCCCCCC
T ss_conf 33011454635899999999999999984898689985163001003310653431245555420013455301021778
Q ss_pred CCCCCCCCCCC
Q ss_conf 78663356899
Q 003561 801 TNREECMACGS 811 (811)
Q Consensus 801 ~~~~~c~~c~~ 811 (811)
+++|.||+||+
T Consensus 782 ~~~~~c~~c~~ 792 (792)
T 3hnc_A 782 ENRDECLMCGS 792 (792)
T ss_dssp -----------
T ss_pred CCCCCCCCCCC
T ss_conf 99400222479
No 2
>3k8t_A Ribonucleoside-diphosphate reductase large chain; eukaryotic ribonucleotide reductase, nucleotide analogs, all enzyme ATP-binding; HET: DGT 2A5; 2.10A {Saccharomyces cerevisiae} PDB: 1zyz_A 2cvs_A 2cvt_A* 2cvu_A* 2cvv_A* 1zzd_A* 2cvw_A* 2cvy_A* 2eud_A* 2zlf_A 2zlg_A* 2cvx_A* 3paw_A 3rsr_A* 3s87_A* 3s8b_A* 3s8c_A* 3s8a_A* 3tb9_A* 3tba_A*
Probab=1.00 E-value=1 Score=1758.45 Aligned_cols=760 Identities=64% Similarity=1.121 Sum_probs=740.0
Q ss_pred CEEEECCCCEEECCHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHCCCCCCHHHHHHH
Q ss_conf 95880399352138679999999988039999879787999998110899998899999999998632289983999999
Q 003561 1 MYVVKRDGRQEAVHFDKITARLKKLSYGLSTEHCDPVLVSQKVCAGVYKGVTTSQLDELAAETAAAMTTNHPDYASLAAR 80 (811)
Q Consensus 1 ~~V~KrdG~~e~~~~~ki~~~i~~~~~~l~~~~v~~~~i~~~~~~~~~d~itt~ei~~~li~~a~~~~~~~p~y~~lA~R 80 (811)
|+|+||||++|||+++||+++|+|+|+||+.++||+.+|+.++..+++|||||+||++++|++|++|+.+||||+++|||
T Consensus 1 ~~V~krdG~~e~~~~~ki~~~i~~~~~gl~~~~v~~~~i~~~~~~~~~~gitt~el~~~~i~~a~~~~~~~Pdy~~~AaR 80 (888)
T 3k8t_A 1 MYVYKRDGRKEPVQFDKITARISRLCYGLDPKHIDAVKVTQRIISGVYEGVTTIELDNLAAETCAYMTTVHPDYATLAAR 80 (888)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred CEEEECCCCEEECCHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHCCCCCCHHHHHHH
T ss_conf 94892699654468999999999997156756779999999999754699988999999999999735218778999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCHHHHHHHHHCHHHHHHHHCCCCCCCCCHHHHHHHHHHHCCCCC
Q ss_conf 99998878841212599999997612102876557674799999961999977620124689980569999986236349
Q 003561 81 IAVSNLHKNTKKSFSETIKDMYNHYNERSGLKAPLIADDIYEIIMKNAACLDSEIIYDRDFDYDYFGFKTLERSYLLKVQ 160 (811)
Q Consensus 81 l~~~~l~k~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~l~~~i~~~rd~~~~y~g~~~l~~~Yllk~~ 160 (811)
|++++|||++.++|++.+.++|+|++.++|+..+++++++|+++++++++|++.|+|+||+.|+|+|+++|+++||+|.+
T Consensus 81 l~~~~l~k~~~~~f~~~~~~~~~~~~~~~g~~~~li~~~~~~~~~~~~~~L~~~i~~~RD~~f~y~g~~~L~~rYllk~~ 160 (888)
T 3k8t_A 81 IAISNLHKQTTKQFSKVVEDLYRYVNAATGKPAPMISDDVYNIVMENKDKLNSAIVYDRDFQYSYFGFKTLERSYLLRIN 160 (888)
T ss_dssp ---------CCCCHHHHHHHHHTCEETTTTEECCSSCHHHHHHHHHTHHHHHTTCCGGGGGGSCHHHHHHHHHHTSCEET
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHHHHHCHHCCCCCCHHHHHHHHHCCCCCCC
T ss_conf 99999999987655378999998740430554343477899999999999997747211468986889999863454649
Q ss_pred CCCCCCHHHHHHHHHHHHCCCCHHHHHHHHHHHHCCCEECCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHH
Q ss_conf 92148989999999967304898999999999753908616610014688888877632212348988889999999999
Q 003561 161 GKVVERPQHMLMRVSIGIHKDDIDSAIKTYHMMSQRWFTHASPTLFNAGTPRPQLSSCFLVCMKDDSIEGIYETLKECAV 240 (811)
Q Consensus 161 g~~~E~pq~~~~rvA~~l~~~~~~~~~~~y~~ls~~~~~~atP~l~naGt~~~~lsSCfl~~~~~Ds~~~I~~~~~~~a~ 240 (811)
|+++|+||+||||||++|+.++++++++||++||+++|+||||||+|+||+++|||||||+.+++||++||+++++++++
T Consensus 161 g~~~E~pq~~~mRVA~~la~~~~~~a~~fY~~ms~~~f~paTPtL~NAGt~~~qlsSCFll~~~~DSl~gI~~~~~~~a~ 240 (888)
T 3k8t_A 161 GQVAERPQHLIMRVALGIHGRDIEAALETYNLMSLKYFTHASPTLFNAGTPKPQMSSCFLVAMKEDSIEGIYDTLKECAL 240 (888)
T ss_dssp TEECCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTSEEECHHHHHHTTSSSCCCCCEEEEECCCSSHHHHHHHHHHHHH
T ss_pred CCEEECHHHHHHHHHHHHCCCCHHHHHHHHHHHHCCCCCCCCHHHHCCCCCCCCCCCEECCCCCCCCHHHHHHHHHHHHH
T ss_conf 98702899999999998662369999999999970881259866534899988777533247787518999999999999
Q ss_pred HHHHCCCCCEEECEECCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHCCCCCCCCEEEECCCCCCCHHHHHHHHHCCCC
Q ss_conf 99752974112001237998435888866774207999999999975189733463176136886338999981110783
Q 003561 241 ISKSAGGIGVSVHNIRATGSYIRGTNGTSNGIVPMLRVFNDTARYVDQGGGKRKGAFAVYLEPWHADIFEFLNLKKNHGK 320 (811)
Q Consensus 241 isk~ggGvG~~~s~iR~~Gs~I~g~~g~ssG~vp~lk~~~~~~~~v~qgG~~R~Ga~~vyl~~wH~DI~~fl~~K~~~g~ 320 (811)
++|+|||||+|||+|||+|++|+|++|+|||||||||+||+++.+|+|||++|+||+|+||++|||||++||++|+++|+
T Consensus 241 isK~GGGiG~~~s~iR~~Gs~I~g~~g~ssG~Vpfmkv~d~~~~~v~QgG~~RrGA~~vyL~vwHpDI~eFL~~K~~~g~ 320 (888)
T 3k8t_A 241 ISKTAGGIGLHIHNIRSTGSYIAGTNGTSNGLIPMIRVFNNTARYVDQGGNKRPGAFALYLEPWHADIFDFIDIRKNHGK 320 (888)
T ss_dssp HHTTCCEEEEECTTSCCTTCEETTTTEECCCHHHHHHHHHHHHHHCCTTC---CCCEEEEECTTBTTHHHHTTTTCSSSC
T ss_pred HHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHCCCCCCCCEEEEECCCCCHHHHHHHHHHHCCC
T ss_conf 99847876313455377878046889877986009998999999998089853663468855887109999998651481
Q ss_pred CCCCCCCCCEECCCCHHHHHHHHCCCCEEEECCCCCCCCHHHHHHHHHHHHHHHHHCCCEEEEEEHHHHHHHHHHHHHHH
Q ss_conf 21011234300124989899997199668766787796122231579999999986194038982899999999988852
Q 003561 321 EEHRARDLFYALWVPDLFMERVQTNGQWSLFCPNEASGLADCWGAEFEKLYTHYEREGKAKKVVQAQNLWFEILTSQIET 400 (811)
Q Consensus 321 ~~~r~~~l~~~v~i~d~Fm~rv~~~~~w~Lf~P~~~~~L~~~~g~eF~~~Y~~~e~~~~~~~~v~Ar~l~~~I~~~~~~t 400 (811)
+++|++++|+||||||+||+||++|++|+||+|+++|+|.++||++|+++|++||+++.. ++|+||+||++|++++|+|
T Consensus 321 e~~R~~~l~~sV~IpD~FMe~V~~d~~w~Lf~P~~~p~L~d~yG~eFe~~Y~~ye~~g~~-k~V~AreLw~~I~~~~~et 399 (888)
T 3k8t_A 321 EEIRARDLFPALWIPDLFMKRVEENGTWTLFSPTSAPGLSDCYGDEFEALYTRYEKEGRG-KTIKAQKLWYSILEAQTET 399 (888)
T ss_dssp STTCCTTEEEEEEECHHHHHHHHTTCEEEEBCTTTSTTGGGCCHHHHHHHHHHHHHTTCS-EEEEHHHHHHHHHHHHHHH
T ss_pred HHHHHHHCEEEEEECHHHHHHHHCCCCEEEECCCCCCCHHHHHCHHHHHHHHHHHHCCCE-EEEEHHHHHHHHHHHHHHH
T ss_conf 656464172121109999999866998798566457507665146899999999865971-4877999999999999984
Q ss_pred CCCEEEEHHHHHHHCCCCCCCCEEEECCCCCCCCCCCCCCCEEEEECCCCCCHHCCCCCCCCCCCCCCCCCCCCCCCCCC
Q ss_conf 87304720236531687888824421488523445899961358704456101000279887789864224579998667
Q 003561 401 GTPYMLFKDTCNRKSNQQNLGTIKSSNLCTEIIEYTSPTETAVCNLASIALPRFVREKDVPVESHPSRIVGSRGSKNRFF 480 (811)
Q Consensus 401 G~P~i~f~D~~Nr~~~~~~~g~I~~sNlC~EI~~~~~~~e~~~CnL~SInL~~~v~~~~~~~~~~~~~~~~~~~~~~~~f 480 (811)
|+|||+|+|+||++||+++.|+|++||||+||+||++++++++|||+||||++|+.++. .+....|
T Consensus 400 G~P~i~f~D~iNr~n~~~~~G~I~~SNlC~EI~~~~~~~e~avCNLgSINL~~fv~~~~--------------~~~~~~f 465 (888)
T 3k8t_A 400 GTPFVVYKDACNRKSNQKNLGVIKSSNLCCEIVEYSAPDETAVCNLASVALPAFIETSE--------------DGKTSTY 465 (888)
T ss_dssp SCCEEEEHHHHHHTCTTTTTCCCCCCCTTSCCCCCCBTTBCEEECEEEEEGGGGBC-------------------CCCCB
T ss_pred CCCEEEEHHHHHHCCCCCCCCEEEEECCCCCCCCCCCCCCCEEEECHHHHHHHHHCCCC--------------CCCCCCC
T ss_conf 89858862677726998667818884366664677899971388327853999962203--------------4554667
Q ss_pred CHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHCCCCEEEECCHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHHH
Q ss_conf 97899999999999999998408996799999861049703234039999999199999998899999999999999999
Q 003561 481 DFEKLAEVTAIVTENLNKIIDVNYYPVETARRSNLRHRPIGIGVQGLADTFILLGMAFESPEAQQLNKDIFETIYYHALK 560 (811)
Q Consensus 481 d~~~l~~~v~~avr~LD~vid~~~~p~~~~~~~~~~~R~iGiGv~Glad~L~~~gi~y~S~ea~~l~~~i~e~i~~~a~~ 560 (811)
||+.|+++|+++||+||+|||.+.||+|+++++++++|+||||||||||+|+++|++|+|+||++|+++|||+|+|+|++
T Consensus 466 D~~~l~~~v~~avR~LDnVID~n~yP~~~a~~~n~~~R~IGLGvmGlad~L~~lgi~Y~S~eA~~l~~~i~e~I~~~A~~ 545 (888)
T 3k8t_A 466 NFKKLHEIAKVVTRNLNRVIDRNYYPVEEARKSNMRHRPIALGVQGLADTFMLLRLPFDSEEARLLNIQIFETIYHASME 545 (888)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHCCCSSHHHHHHHHHHCCCEEEEECHHHHHHHHTCCTTSHHHHHHHHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHCCCCCCCCHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHHH
T ss_conf 99999999999999999998725883799999977369723249999999997799879999999999999999999999
Q ss_pred HHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHCCCCCCCEECCCCCCCCCCCCCCCCCCCCCC
Q ss_conf 99999998199999988966668777534456999713489999999842865441012599986000047975222355
Q 003561 561 TSSEIAAKEGPYETYHNSPVSKGILQPDMWNVIPSDRWDWGVLRDMISKNGVRNSLLVAPMPTASTSQILGNNECFEPYT 640 (811)
Q Consensus 561 aS~eLAke~G~~~~f~~S~~~~G~l~~d~~~~~~~~~~dW~~Lr~~i~~~GlRNs~l~AiaPT~s~S~i~g~s~gieP~~ 640 (811)
||++||+|+|+||.|++|+|++|+|++|.|+..|+..+||++||++|++||+|||+++|||||||||+|+|+|+||||+|
T Consensus 546 AS~eLAkErG~fp~F~~S~~~~G~l~~d~~~~~p~~~~dW~~Lre~I~k~GlRNs~llAiAPTgSiS~I~g~s~sIEP~f 625 (888)
T 3k8t_A 546 ASCELAQKDGPYETFQGSPASQGILQFDMWDQKPYGMWDWDTLRKDIMKHGVRNSLTMAPMPTASTSQILGYNECFEPVT 625 (888)
T ss_dssp HHHHHHHHHCCCTTCTTSGGGGTCCHHHHTTCCCCCSSCHHHHHHHHHHHCCSCSCCBCCCCCTTHHHHHTCCCTTCCCS
T ss_pred HHHHHHHHHCCCCCCCCCHHHCCCCCHHHCCCCCHHHCCHHHHHHHHHHHCCCCCCCCCCCCCHHHHHHCCCCCCCCCCH
T ss_conf 99999998588988777810146641222037861220499999999762854304637899503777338776427351
Q ss_pred CCEEEEECCCCCEEEECHHHHHHHHHCCCCCHHHHHHHHCCCCCCCCCCCCCHHHHHHHHHHCCCCHHHHHHHHHHHCCC
Q ss_conf 45067881457437848678999998599938876343416996013689966788601001027929899999983553
Q 003561 641 SNIYSRRVLSGEFVVVNKHLLHDLTEMGIWSPTIKNKIIYDDGSVQKIPEIPEELKMIYKTVWEIKQMTLVDMAVDRGCY 720 (811)
Q Consensus 641 s~~y~r~~~~g~~~~vn~~l~~~l~~~g~~~~~~~~~i~~~~Gsv~~i~~~p~~~k~~f~tA~ei~~~~~i~~~a~~Q~~ 720 (811)
+++|.|++.+|+|+++|++|+++|+++|+|++++++.|+.++|++|.+|.+|++++++|+|||||+|+++|+|+|++|||
T Consensus 626 s~~y~R~~~~G~~~vvN~~l~~~L~~~g~~~~~~~~~i~~~~Gsvq~ip~lp~~~k~~f~tA~eI~~~~~I~m~A~~Q~~ 705 (888)
T 3k8t_A 626 SNMYSRRVLSGEFQVVNPYLLRDLVDLGIWDEGMKQYLITQNGSIQGLPNVPQELKDLYKTVWEISQKTIINMAADRSVY 705 (888)
T ss_dssp CSBC---------CCBCHHHHHHHHHTTCCSHHHHHHHHTTTTCCTTCTTSCHHHHHHTCCGGGSCHHHHHHHHHHHHTT
T ss_pred HHHHHHHHCCCCEEEECHHHHHHHHHCCCCCHHHHHHHHHCCCCEECCCCCCHHHHHHHHHHHHCCHHHHHHHHHHHCCC
T ss_conf 14676433057504427999999997499809999999863996605877997898984217508999999999997675
Q ss_pred CCCCCCEEEEECCCCHHHHHHHHHHHHHCCCCEEEEEECCCCCCCCCCCCCCCCC
Q ss_conf 4346400574079998789999999998499548998447532222112323322
Q 003561 721 IDQSQSLNIHMDQPNFKKVTSLHFRTWSRGLKTGMYYLRSRAAADAIKFTVDTSV 775 (811)
Q Consensus 721 vDQsiS~nl~~~~~~~~~i~~~~~~Awk~GlKt~~YY~r~~~~~~~~~~~~~~~~ 775 (811)
||||||+|+|+++++.++|.++|++|||+||||+|||+|+++++++++|||+++.
T Consensus 706 IDQs~S~tl~~~~~t~~dl~~~y~~Awk~GLKt~~YY~Rt~~a~~~~~~t~~~~~ 760 (888)
T 3k8t_A 706 IDQSHSLNLFLRAPTMGKLTSMHFYGWKKGLKTGMYYLRTQAASAAIQFTIDQKI 760 (888)
T ss_dssp CSSCCCCCEECSSCCHHHHHHHHHHHHHHTCSEEESCEECC--------------
T ss_pred CHHHCCCEEECCCCCHHHHHHHHHHHHHHCCCEEEEEECCCCHHHHHHHCCCHHH
T ss_conf 3311146475699999999999999998389867998317523322301245888
No 3
>2wgh_A Ribonucleoside-diphosphate reductase large subunit; DNA replication, allosteric enzyme, nucleotide-binding, cytoplasm, ATP-binding, polymorphism; HET: DTP; 2.30A {Homo sapiens}
Probab=1.00 E-value=1 Score=1511.48 Aligned_cols=671 Identities=70% Similarity=1.180 Sum_probs=654.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCHHHHHHHHHCHHHHHHHHCCCCCCCCCHHHHHHHHHH
Q ss_conf 99999999998878841212599999997612102876557674799999961999977620124689980569999986
Q 003561 75 ASLAARIAVSNLHKNTKKSFSETIKDMYNHYNERSGLKAPLIADDIYEIIMKNAACLDSEIIYDRDFDYDYFGFKTLERS 154 (811)
Q Consensus 75 ~~lA~Rl~~~~l~k~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~l~~~i~~~rd~~~~y~g~~~l~~~ 154 (811)
.++||||++++|||++.++|++.+..++.++++++|++.+++++++|+++.++.++|++.|+|+||+.|+|+|+++|+++
T Consensus 2 ~~~aarl~~~~l~k~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~l~~~i~~~rd~~f~~~g~~~l~~~ 81 (676)
T 2wgh_A 2 AILAARIAVSNLHKETKKVFSDVMEDLYNYINPHNGKHSPMVAKSTLDIVLANKDRLNSAIIYDRDFSYNYFGFKTLERS 81 (676)
T ss_dssp --CHHHHHHHHHHHTSCSCHHHHHHHHHHCBCTTTCCBCCSSCHHHHHHHHHTHHHHHHTCCGGGGGGSCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHCHHHHHHHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHH
T ss_conf 49999999999999977656588999999853201441543077899999999999998858021378888899999964
Q ss_pred HCCCCCCCCCCCHHHHHHHHHHHHCCCCHHHHHHHHHHHHCCCEECCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHH
Q ss_conf 23634992148989999999967304898999999999753908616610014688888877632212348988889999
Q 003561 155 YLLKVQGKVVERPQHMLMRVSIGIHKDDIDSAIKTYHMMSQRWFTHASPTLFNAGTPRPQLSSCFLVCMKDDSIEGIYET 234 (811)
Q Consensus 155 Yllk~~g~~~E~pq~~~~rvA~~l~~~~~~~~~~~y~~ls~~~~~~atP~l~naGt~~~~lsSCfl~~~~~Ds~~~I~~~ 234 (811)
|++|.+|+++|+||+||||||++++..+++.+++||++|++++|+||||||+|+||+++||+||||+++++||++||+++
T Consensus 82 Yllk~~g~~~E~pq~~~~RVA~~la~~~~~~a~~~y~~ls~~~f~patPtl~naGt~~~qlssCfl~~v~~Dsl~gI~~~ 161 (676)
T 2wgh_A 82 YLLKINGKVAERPQHMLMRVSVGIHKEDIDAAIETYNLLSERWFTHASPTLFNAGTNRPQLSSCFLLSMKDDSIEGIYDT 161 (676)
T ss_dssp TSCEETTEECCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTSEEECHHHHHHTTSSSCCCCCEEEEECCCSSHHHHHHH
T ss_pred CCCCCCCCCCCCHHHHHHHHHHHHCCCCHHHHHHHHHHHHHCCCCCCCHHHHCCCCCCCCCCCEEEECCCCCCHHHHHHH
T ss_conf 04466997257999999999998713379999999999981985367467763788888777727626776517899999
Q ss_pred HHHHHHHHHHCCCCCEEECEECCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHCCCCCCCCEEEECCCCCCCHHHHHHH
Q ss_conf 99999999752974112001237998435888866774207999999999975189733463176136886338999981
Q 003561 235 LKECAVISKSAGGIGVSVHNIRATGSYIRGTNGTSNGIVPMLRVFNDTARYVDQGGGKRKGAFAVYLEPWHADIFEFLNL 314 (811)
Q Consensus 235 ~~~~a~isk~ggGvG~~~s~iR~~Gs~I~g~~g~ssG~vp~lk~~~~~~~~v~qgG~~R~Ga~~vyl~~wH~DI~~fl~~ 314 (811)
++++++++|.|||||+|+|+|||+|++|+|++|+|||||||||+||+++.+|+|||++||||.|+||++|||||++||++
T Consensus 162 ~~~~a~i~k~gGGvG~~~s~iR~~Gs~I~g~~g~ssG~vpfmk~~d~~~~~v~QgG~~RrGA~~~~l~~~HpDI~eFl~~ 241 (676)
T 2wgh_A 162 LKQCALISKSAGGIGVAVSCIRATGSYIAGTNGNSNGLVPMLRVYNNTARYVDQGGNKRPGAFAIYLEPWHLDIFEFLDL 241 (676)
T ss_dssp HHHHHHHHHTTCEEEEECTTSCCTTCEEGGGTEECCCHHHHHHHHHHHHHHSCSTTSSCCCCEEEEECTTBTTHHHHTTT
T ss_pred HHHHHHHHHCCCCCEECCEEECCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHCCCCCCCCEEEEECCCCHHHHHHHHH
T ss_conf 99999997328975121100368998136889878994369999999999998468844775369867987169999986
Q ss_pred HHCCCCCCCCCCCCCEECCCCHHHHHHHHCCCCEEEECCCCCCCCHHHHHHHHHHHHHHHHHCCCEEEEEEHHHHHHHHH
Q ss_conf 11078321011234300124989899997199668766787796122231579999999986194038982899999999
Q 003561 315 KKNHGKEEHRARDLFYALWVPDLFMERVQTNGQWSLFCPNEASGLADCWGAEFEKLYTHYEREGKAKKVVQAQNLWFEIL 394 (811)
Q Consensus 315 K~~~g~~~~r~~~l~~~v~i~d~Fm~rv~~~~~w~Lf~P~~~~~L~~~~g~eF~~~Y~~~e~~~~~~~~v~Ar~l~~~I~ 394 (811)
|+++|++++|++++|+||||||+||+||++|++|+||+|+++|+|.++||++|+++|.+||+++..+++|+||+||++|+
T Consensus 242 K~~~g~e~~r~~~l~~sv~i~D~Fm~~v~~d~~w~L~~P~~~~~l~~~yg~~f~~~Y~~~~~~~~~~k~v~Ar~L~~~I~ 321 (676)
T 2wgh_A 242 KKNTGKEEQRARDLFFALWIPDLFMKRVETNQDWSLMCPNECPGLDEVWGEEFEKLYASYEKQGRVRKVVKAQQLWYAII 321 (676)
T ss_dssp TCSSSCGGGCCTTSEEEEEECHHHHHHHHTTCEEEEBCTTTSTTGGGCCTHHHHHHHHHHHHTTCCSEEEEHHHHHHHHH
T ss_pred HCCCCCHHHHHHHCCHHHCCCHHHHHHHHCCCCEEEECCCCCCCHHHHHCHHHHHHHHHHHHCCCCEEEEEHHHHHHHHH
T ss_conf 13366266656534023213999999998499759978544653666514489999999986796126866999999999
Q ss_pred HHHHHHCCCEEEEHHHHHHHCCCCCCCCEEEECCCCCCCCCCCCCCCEEEEECCCCCCHHCCCCCCCCCCCCCCCCCCCC
Q ss_conf 98885287304720236531687888824421488523445899961358704456101000279887789864224579
Q 003561 395 TSQIETGTPYMLFKDTCNRKSNQQNLGTIKSSNLCTEIIEYTSPTETAVCNLASIALPRFVREKDVPVESHPSRIVGSRG 474 (811)
Q Consensus 395 ~~~~~tG~P~i~f~D~~Nr~~~~~~~g~I~~sNlC~EI~~~~~~~e~~~CnL~SInL~~~v~~~~~~~~~~~~~~~~~~~ 474 (811)
+++|+||+|||+|+|+||++||+++.|+|++||||+||+||++++++++|||+||||++|+..
T Consensus 322 ~~~~etG~Pgi~f~D~~N~~~~~~~~g~I~~SNpC~EI~~~~~~~e~~~CNL~SiNL~~~v~~----------------- 384 (676)
T 2wgh_A 322 ESQTETGTPYMLYKDSCNRKSNQQNLGTIKCSNLCTEIVEYTSKDEVAVCNLASLALNMYVTS----------------- 384 (676)
T ss_dssp HHHHHHSCCEEEEHHHHHHTCTTGGGCCCCCCCTTSCCCCCCBTTBCEEECEEEEEGGGGBCT-----------------
T ss_pred HHHHHHCCCEEEECHHHHHCCCCCCCCCEEECCCCCCCCCCCCCCCEEEEECCCCCHHHHHCC-----------------
T ss_conf 999997898588504345348877778078514650312668788645786243319999533-----------------
Q ss_pred CCCCCCCHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHCCCCEEEECCHHHHHHHHCCCCCCCHHHHHHHHHHHHHH
Q ss_conf 99866797899999999999999998408996799999861049703234039999999199999998899999999999
Q 003561 475 SKNRFFDFEKLAEVTAIVTENLNKIIDVNYYPVETARRSNLRHRPIGIGVQGLADTFILLGMAFESPEAQQLNKDIFETI 554 (811)
Q Consensus 475 ~~~~~fd~~~l~~~v~~avr~LD~vid~~~~p~~~~~~~~~~~R~iGiGv~Glad~L~~~gi~y~S~ea~~l~~~i~e~i 554 (811)
+..|||+.|+++|+++||+||+|||.+.||+|+++++++++|+||||+|||||+|+++|++|+|+||++|+++|||.|
T Consensus 385 --~~~~D~~~l~~~v~~avr~Ld~vid~~~yp~~~~~~~~~~~R~IGlGv~Glad~L~~~gi~Y~S~ea~~~~~~i~e~i 462 (676)
T 2wgh_A 385 --EHTYDFKKLAEVTKVVVRNLNKIIDINYYPVPEACLSNKRHRPIGIGVQGLADAFILMRYPFESAEAQLLNKQIFETI 462 (676)
T ss_dssp --TSCBCHHHHHHHHHHHHHHHHHHHHHCCCSSHHHHHHHHHHCCCEEEEECHHHHHHHTTCCTTSHHHHHHHHHHHHHH
T ss_pred --CCCCCHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHCCCCCEECHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHH
T ss_conf --578898999999999999999999668873799999987179716619999999997799889999999999999999
Q ss_pred HHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHCCCCCCCEECCCCCCCCCCCCCCCC
Q ss_conf 99999999999998199999988966668777534456999713489999999842865441012599986000047975
Q 003561 555 YYHALKTSSEIAAKEGPYETYHNSPVSKGILQPDMWNVIPSDRWDWGVLRDMISKNGVRNSLLVAPMPTASTSQILGNNE 634 (811)
Q Consensus 555 ~~~a~~aS~eLAke~G~~~~f~~S~~~~G~l~~d~~~~~~~~~~dW~~Lr~~i~~~GlRNs~l~AiaPT~s~S~i~g~s~ 634 (811)
+|+|++||++||+|+|+||.|++|+|++|++++|.|+..|+..+||++||++|++||+|||+++|||||||||+|+|+|+
T Consensus 463 ~~~A~~aS~eLA~e~G~f~~f~~s~~~~G~~~~d~~~~~~~~~~dW~~Lr~~i~~~G~RNs~l~aiaPTgTiS~i~g~s~ 542 (676)
T 2wgh_A 463 YYGALEASCDLAKEQGPYETYEGSPVSKGILQYDMWNVTPTDLWDWKVLKEKIAKYGIRNSLLIAPMPTASTAQILGNNE 542 (676)
T ss_dssp HHHHHHHHHHHHHHHCCCTTCTTSSGGGTCCHHHHTTCCCCSSSCHHHHHHHHHHHCCSCSCCBCCCCCTTHHHHHTCCC
T ss_pred HHHHHHHHHHHHHHHCCCCCCCCCHHHCCCCCHHHHHCCCCCHHHHHHHHHHHHHHCCCCCEEEECCCCCCEEEECCCCC
T ss_conf 99999999999997398866655824316751235406897144299999999985872010242268755553138887
Q ss_pred CCCCCCCCEEEEECCCCCEEEECHHHHHHHHHCCCCCHHHHHHHHCCCCCCCCCCCCCHHHHHHHHHHCCCCHHHHHHHH
Q ss_conf 22235545067881457437848678999998599938876343416996013689966788601001027929899999
Q 003561 635 CFEPYTSNIYSRRVLSGEFVVVNKHLLHDLTEMGIWSPTIKNKIIYDDGSVQKIPEIPEELKMIYKTVWEIKQMTLVDMA 714 (811)
Q Consensus 635 gieP~~s~~y~r~~~~g~~~~vn~~l~~~l~~~g~~~~~~~~~i~~~~Gsv~~i~~~p~~~k~~f~tA~ei~~~~~i~~~ 714 (811)
||||+|+++|+|++.+|+|+++|++|+++|+++|+|++++++.|+.++|+++.+|.+|++++++|+|||||+|+++|+|+
T Consensus 543 gIeP~~s~~y~R~~~~g~~~~vn~~l~~~L~~~G~~~e~~~~~i~~~~Gsv~~~p~lp~~~~~~f~tA~ei~~~~~i~~~ 622 (676)
T 2wgh_A 543 SIEPYTSNIYTRRVLSGEFQIVNPHLLKDLTERGLWHEEMKNQIIACNGSIQSIPEIPDDLKQLYKTVWEISQKTVLKMA 622 (676)
T ss_dssp TTCCCCCSBC---------CCBCHHHHHHHHHHTC-------------CCCTTCSSSCHHHHHHTCCTTSSCHHHHHHHH
T ss_pred CCCCCCCHHEEEECCCCCEEECCHHHHHHHHHCCCCHHHHHHHHHHCCCCEECCCCCCHHHHHHHCCHHHCCHHHHHHHH
T ss_conf 22705210315762567335237899999998399849999999864993714777997899882788648999999999
Q ss_pred HHHCCCCCCCCCEEEEECCCCHHHHHHHHHHHHHCCCCEEEEEECCCCCC
Q ss_conf 98355343464005740799987899999999984995489984475322
Q 003561 715 VDRGCYIDQSQSLNIHMDQPNFKKVTSLHFRTWSRGLKTGMYYLRSRAAA 764 (811)
Q Consensus 715 a~~Q~~vDQsiS~nl~~~~~~~~~i~~~~~~Awk~GlKt~~YY~r~~~~~ 764 (811)
|++|||||||||+|+|+++++.++|.++|++|||+||||++||||++.-.
T Consensus 623 a~~Q~~iDqsiS~tl~~~~~t~~~l~~~y~~Awk~GlKt~~yy~r~~~~~ 672 (676)
T 2wgh_A 623 AERGAFIDQSQSLNIHIAEPNYGKLTSMHFYGWKQGLKTGMYYLRTRAHH 672 (676)
T ss_dssp HHHHTTCSSCCCCCEECSSCCHHHHHHHHHHHHHTTCSEEESCEECC---
T ss_pred HHHCCCCCCCCCEEEECCCCCHHHHHHHHHHHHHHCCCEEEEEEEEECCC
T ss_conf 99677776666437864999999999999999981997799999874234
No 4
>2xap_A Ribonucleoside-diphosphate reductase 1 subunit alpha; oxidoreductase, DNA replication, allosteric enzyme, nucleotide-binding; HET: NIY; 2.10A {Escherichia coli} PDB: 2xo5_A* 2x0x_A 2r1r_A 3r1r_A* 3uus_A* 1r1r_A 2xav_A* 7r1r_A 2xax_A* 6r1r_A 2xaw_A* 5r1r_A 2xo4_A* 2xak_A* 4r1r_A* 2xaz_A* 2xay_A* 1rlr_A 1qfn_B
Probab=1.00 E-value=1 Score=1508.62 Aligned_cols=702 Identities=29% Similarity=0.483 Sum_probs=659.0
Q ss_pred CEEEECCCCEEECCHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHCC-CCCCHHHHHH
Q ss_conf 958803993521386799999999880399998797879999981108999988999999999986322-8998399999
Q 003561 1 MYVVKRDGRQEAVHFDKITARLKKLSYGLSTEHCDPVLVSQKVCAGVYKGVTTSQLDELAAETAAAMTT-NHPDYASLAA 79 (811)
Q Consensus 1 ~~V~KrdG~~e~~~~~ki~~~i~~~~~~l~~~~v~~~~i~~~~~~~~~d~itt~ei~~~li~~a~~~~~-~~p~y~~lA~ 79 (811)
|+|+||||++|||+++||+++|+|+|+||+ .+|+.+|+.++..+++|||||+|||+++|++|+++++ +||+|+++||
T Consensus 5 ~~v~krdG~~e~~~~~ki~~~i~~~~~~l~--~~~~~~~~~~~~~~~~~~~tt~ei~~~~~~~a~~~~~~~~p~~~~~Aa 82 (761)
T 2xap_A 5 LLVTKRDGSTERINLDKIHRVLDWAAEGLH--NVSISQVELRSHIQFYDGIKTSDIHETIIKAAADLISRDAPDYQYLAA 82 (761)
T ss_dssp CEEECSSSCEEECCHHHHHHHHHHHHTTCS--SCCHHHHHHHHHTTCCTTEEHHHHHHHHHHHHHHTCCSSSTTHHHHHH
T ss_pred EEEEECCCCCCCCCHHHHHHHHHHHHCCCC--CCCHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHCCCCCCCHHHHHH
T ss_conf 389967995525789999999999970577--899999999998514699999999999999999855823867799999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCHHHHH-HHHHCHHHHHHHHCCCCCCCCCHHHHHHHHHHHCCC
Q ss_conf 9999988788412125999999976121028765576747999-999619999776201246899805699999862363
Q 003561 80 RIAVSNLHKNTKKSFSETIKDMYNHYNERSGLKAPLIADDIYE-IIMKNAACLDSEIIYDRDFDYDYFGFKTLERSYLLK 158 (811)
Q Consensus 80 Rl~~~~l~k~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~-~~~~~~~~l~~~i~~~rd~~~~y~g~~~l~~~Yllk 158 (811)
||++++|||++.++|.. ..+++++. ..+..+++++++++ |+.+++++|++.|+|+||+.|+|+|+++|+++|++|
T Consensus 83 rl~~~~l~k~~~~~~~~--~~~~~~~~--~~~~~~~~~~~~~~~y~~~~~~~l~~~i~~~rd~~~~~~g~~~l~~rYllk 158 (761)
T 2xap_A 83 RLAIFHLRKKAYGQFEP--PALYDHVV--KMVEMGKYDNHLLEDYTEEEFKQMDTFIDHDRDMTFSYAAVKQLEGKYLVQ 158 (761)
T ss_dssp HHHHHHHHHHHHSSSSC--CCHHHHHH--HHHHTTSSCTHHHHHSCHHHHHHHHHHCCGGGGGGCCHHHHHHHHHHTSCB
T ss_pred HHHHHHHHHHHHCCCCH--HHHHHHHH--HHHHCCHHHHHHHHHCCHHHHHHHHHHHCCCCCCCCCHHHHHHHHHCCCCC
T ss_conf 99999999997634676--77999999--887312113788864369999999966461114788878999998545874
Q ss_pred C--CCCCCCCHHHHHHHHHHHHCCCC-----HHHHHHHHHHHHCCCEECCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHH
Q ss_conf 4--99214898999999996730489-----8999999999753908616610014688888877632212348988889
Q 003561 159 V--QGKVVERPQHMLMRVSIGIHKDD-----IDSAIKTYHMMSQRWFTHASPTLFNAGTPRPQLSSCFLVCMKDDSIEGI 231 (811)
Q Consensus 159 ~--~g~~~E~pq~~~~rvA~~l~~~~-----~~~~~~~y~~ls~~~~~~atP~l~naGt~~~~lsSCfl~~~~~Ds~~~I 231 (811)
. +|+++|+||++|||||++++..+ .+++++||++|++++|+||||||+|+|++++||+||||+++ +||++||
T Consensus 159 ~~~~g~~~E~pq~~~~RVA~~la~~e~~~~~~~~a~~fy~~ls~~~~~patPtl~naGt~~~qlssCFl~~v-~Dsle~I 237 (761)
T 2xap_A 159 NRVTGEIYESAQFLYILVAACLFSNYPRETRLQYVKRFYDAVSTFKISLPTPIMSGVRTPTRQFSSCVLIEC-GDSLDSI 237 (761)
T ss_dssp CTTTCCBCCCHHHHHHHHHHHHTTTSCTTTHHHHHHHHHHHHHTTSEECCHHHHHHTTSSCCCCCCEEEEEC-CSSHHHH
T ss_pred CCCCCCEECCHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHCCCCCCCCHHHHCCCCCCCCCCEEEEECC-CCCHHHH
T ss_conf 499995532899999999999853086101799999999999819867886545417888887620898428-8977899
Q ss_pred HHHHHHHHHHHHHCCCCCEEECEECCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHCCCCCCCCEEEECCCCCCCHHHH
Q ss_conf 99999999999752974112001237998435888866774207999999999975189733463176136886338999
Q 003561 232 YETLKECAVISKSAGGIGVSVHNIRATGSYIRGTNGTSNGIVPMLRVFNDTARYVDQGGGKRKGAFAVYLEPWHADIFEF 311 (811)
Q Consensus 232 ~~~~~~~a~isk~ggGvG~~~s~iR~~Gs~I~g~~g~ssG~vp~lk~~~~~~~~v~qgG~~R~Ga~~vyl~~wH~DI~~f 311 (811)
++++++++++++.|||||+|||+|||+|++|+|++|+|||||||||+||+++.+|+||| +||||.|+||++|||||++|
T Consensus 238 ~~~~~~~~~~~s~ggGvG~~~s~iR~~Gs~I~g~~g~ssG~vpfmk~~d~~~~~v~QgG-~RrGA~~vyL~~~HpDI~eF 316 (761)
T 2xap_A 238 NATSSAIVKYVSQRAGIGINAGRIRALGSPIRGGEAFHTGCIPFYKHFQTAVKSCSQGG-VRGGAATLFYPMWHLEVESL 316 (761)
T ss_dssp HHHHHHHHHHHTTTCEEEEECTTSCCTTCC------CCSCHHHHHHHHHHHHTTTSTTS-SSSCEEEEEEETTBTTHHHH
T ss_pred HHHHHHHHHHHHHCCCCCEEEEECCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHCCC-CCCCCEEEEECCCCCHHHHH
T ss_conf 99999999998638925011000078988278988868881779999999999997069-75776247855888049999
Q ss_pred HHHHHCCCCCCCCCCCCCEECCCCHHHHHHHHCCCCEEEECCCCCCCCHHHH---HHHHHHHHHHHHHCCC-EEEEEEHH
Q ss_conf 9811107832101123430012498989999719966876678779612223---1579999999986194-03898289
Q 003561 312 LNLKKNHGKEEHRARDLFYALWVPDLFMERVQTNGQWSLFCPNEASGLADCW---GAEFEKLYTHYEREGK-AKKVVQAQ 387 (811)
Q Consensus 312 l~~K~~~g~~~~r~~~l~~~v~i~d~Fm~rv~~~~~w~Lf~P~~~~~L~~~~---g~eF~~~Y~~~e~~~~-~~~~v~Ar 387 (811)
|++|+++|++++|++++|+||||||+||+||++|++|+||+|+++++|++.| |++|+++|.+|++++. .+++|+||
T Consensus 317 l~~K~~~g~e~~r~~~l~~~v~i~D~Fm~~v~~d~~w~Lf~P~~~~~l~~~~~~~~~~f~~~Y~~~~~~~~i~~~~v~Ar 396 (761)
T 2xap_A 317 LVLKNNRGVEGNRVRHMDYGVQINKLMYTRLLKGEDITLFSPSDVPGLYDAFFADQEEFERLYTKYEKDDSIRKQRVKAV 396 (761)
T ss_dssp HTTTCSSSCGGGCCTTSEEEEEECHHHHHHHHHTCEEEEBCGGGSTTHHHHHHHCHHHHHHHHHHHHHCTTSCCEEEEHH
T ss_pred HHHHCCCCCCHHHHHHCCCCCCCCHHHHHHHHCCCCEEEECCCCCCCHHHCCCHHHHHHHHHHHHHHHCCCCEEEEEEHH
T ss_conf 99703367504456526640166999999998199759888543410211010015799999999985788136775199
Q ss_pred HHHHHHHHHHHHHCCCEEEEHHHHHHHCCC-CCCCCEEEECCCCCCCCCCCC--------CCCEEEEECCCCCCHHCCCC
Q ss_conf 999999998885287304720236531687-888824421488523445899--------96135870445610100027
Q 003561 388 NLWFEILTSQIETGTPYMLFKDTCNRKSNQ-QNLGTIKSSNLCTEIIEYTSP--------TETAVCNLASIALPRFVREK 458 (811)
Q Consensus 388 ~l~~~I~~~~~~tG~P~i~f~D~~Nr~~~~-~~~g~I~~sNlC~EI~~~~~~--------~e~~~CnL~SInL~~~v~~~ 458 (811)
+||++|++++|+||+|||+|+|+||+++|+ ++.|+|++||||+||+||+.| +++++|||+||||++|+
T Consensus 397 ~L~~~I~~~~~etG~P~i~f~D~~N~~~~~~~~~g~I~~SNlC~Ei~l~~~p~~~~~~~~ge~~~CNL~SiNL~~~~--- 473 (761)
T 2xap_A 397 ELFSLMMQERASTGRIYIQNVDHCNTHSPFDPAIAPVRQSNLCLEIALPTKPLNDVNDENGEIALCTLSAFNLGAIN--- 473 (761)
T ss_dssp HHHHHHHHHHHHHSCEEEEETTHHHHSSSBCTTTSCBCCCCTTSCCCCBCBCCSSTTCTTCBCEECEEEEEETTTCS---
T ss_pred HHHHHHHHHHHHHCCCEEEECHHHHHCCCCCCCCCEEEEECCCCCCCCCCCCCCCCCCCCCCEEECCCCEEEHHHHC---
T ss_conf 99999999999749853872287773597666668077126441234567752000245675133140132299952---
Q ss_pred CCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHCCCCEEEECCHHHHHHHHCCCCC
Q ss_conf 98877898642245799986679789999999999999999840899679999986104970323403999999919999
Q 003561 459 DVPVESHPSRIVGSRGSKNRFFDFEKLAEVTAIVTENLNKIIDVNYYPVETARRSNLRHRPIGIGVQGLADTFILLGMAF 538 (811)
Q Consensus 459 ~~~~~~~~~~~~~~~~~~~~~fd~~~l~~~v~~avr~LD~vid~~~~p~~~~~~~~~~~R~iGiGv~Glad~L~~~gi~y 538 (811)
||+.|+++|+++||+||+|||.+.||+|+++++++++|+||||+|||||+|+++|++|
T Consensus 474 ----------------------d~~~l~~~v~~avr~Ld~vid~~~yp~~~~~~~~~~~R~IGlGv~Glad~L~~~gi~Y 531 (761)
T 2xap_A 474 ----------------------NLDELEELAILAVRALDALLDYQDYPIPAAKRGAMGRRTLGIGVINFAYYLAKHGKRY 531 (761)
T ss_dssp ----------------------SGGGHHHHHHHHHHHHHHHHHHSCCSSHHHHHHHHHHCCEEEEEECHHHHHHHTTCCS
T ss_pred ----------------------CHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHCCCCCCCCCCHHHHHHHCCCCC
T ss_conf ----------------------8999999999999999998982367729999999854763667510999999869987
Q ss_pred CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCC------CCCCCCHHHHHHHHHHCCC
Q ss_conf 9998899999999999999999999999981999999889666687775344569------9971348999999984286
Q 003561 539 ESPEAQQLNKDIFETIYYHALKTSSEIAAKEGPYETYHNSPVSKGILQPDMWNVI------PSDRWDWGVLRDMISKNGV 612 (811)
Q Consensus 539 ~S~ea~~l~~~i~e~i~~~a~~aS~eLAke~G~~~~f~~S~~~~G~l~~d~~~~~------~~~~~dW~~Lr~~i~~~Gl 612 (811)
+|+||++|+++|||.|+|+|++||++||+|+|+||.|++|+|++|++++|.|... +...+||++||++|++||+
T Consensus 532 ~S~ea~~~~~~i~e~i~~~a~~aS~eLA~E~G~~~~f~~s~~~~G~~~~d~~~~~~~~~~~~~~~~dW~~Lr~~i~~~G~ 611 (761)
T 2xap_A 532 SDGSANNLTHKTFEAIQYYLLKASNELAKEQGACPWFNETTYAKGILPIDTYKKDLDTIANEPLHYDWEALRESIKTHGL 611 (761)
T ss_dssp TTSTTHHHHHHHHHHHHHHHHHHHHHHHHHHCCCTTGGGBSGGGTCCHHHHSCGGGGGTCCCCCCSCHHHHHHHHHHHCC
T ss_pred CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCHHHCCCCCHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHCC
T ss_conf 99999999999999999999999999999868798877784533774332455555530373025529999999998486
Q ss_pred CCCCEECCCCCCCCCCCCCCCCCCCCCCCCEEEEECCCCCEEEECHHHHHHHHHCCCCCHHHHHHHHCCCCCCCCCCCCC
Q ss_conf 54410125999860000479752223554506788145743784867899999859993887634341699601368996
Q 003561 613 RNSLLVAPMPTASTSQILGNNECFEPYTSNIYSRRVLSGEFVVVNKHLLHDLTEMGIWSPTIKNKIIYDDGSVQKIPEIP 692 (811)
Q Consensus 613 RNs~l~AiaPT~s~S~i~g~s~gieP~~s~~y~r~~~~g~~~~vn~~l~~~l~~~g~~~~~~~~~i~~~~Gsv~~i~~~p 692 (811)
|||+++|||||||||+|+|+|+||||+|+++|.|+...|.+..++|.+
T Consensus 612 RNs~l~aiAPTgTiS~i~g~s~gIeP~~~~~~~r~~~~G~~~~~~p~~-------------------------------- 659 (761)
T 2xap_A 612 RNSTLSALMPSETSSQISNATNGIEPPRGYVSIKASKDGILRQVVPDY-------------------------------- 659 (761)
T ss_dssp SCSCCBCBCCCSHHHHHTTCCCTTCCCSSSEEEECCTTSCEEEECTTH--------------------------------
T ss_pred CCCEEEECCCCCCEEEECCCCCEECCCCCCEEEEECCCCCEEEECCCH--------------------------------
T ss_conf 211145348886544203778722505464246751368422207788--------------------------------
Q ss_pred HHHHHHHHHHCCCC-HHHHHHHHHHHCCCCCCCCCEEEEECC-------CCHHHHHHHHHHHHHCCCCEEEEEECCCCCC
Q ss_conf 67886010010279-298999999835534346400574079-------9987899999999984995489984475322
Q 003561 693 EELKMIYKTVWEIK-QMTLVDMAVDRGCYIDQSQSLNIHMDQ-------PNFKKVTSLHFRTWSRGLKTGMYYLRSRAAA 764 (811)
Q Consensus 693 ~~~k~~f~tA~ei~-~~~~i~~~a~~Q~~vDQsiS~nl~~~~-------~~~~~i~~~~~~Awk~GlKt~~YY~r~~~~~ 764 (811)
++++++|+|||||+ |+++|+|+|++|||||||||+|+|+++ .+.+++..+|++|||+|||| +||+|+++++
T Consensus 660 ~~l~~~y~ta~ei~~~~~~i~m~A~~Q~~iDqsiS~tl~~~~~~~~~~~~t~~dl~~~y~~Awk~GlKT-~Yy~rsr~~~ 738 (761)
T 2xap_A 660 EHLHDAYELLWEMPGNDGYLQLVGIMQKFIDQSISANTNYDPSRFPSGKVPMQQLLKDLLTAYKFGVKT-LYXQNTRDGA 738 (761)
T ss_dssp HHHTTTCCCGGGCSCSHHHHHHHHHHHTTCSSCBCCCEEECGGGSGGGCEEHHHHHHHHHHHHHTTCCE-ECCEEECCC-
T ss_pred HHHHHHHHHHHCCCCHHHHHHHHHHHCCCCCCCCCCEEEECCCCCCCCCCCHHHHHHHHHHHHHCCCCE-ECCCCCCCHH
T ss_conf 998998768971667899999999976766234264587777433567889999999999999819888-7778772002
Q ss_pred CCCC
Q ss_conf 2211
Q 003561 765 DAIK 768 (811)
Q Consensus 765 ~~~~ 768 (811)
...+
T Consensus 739 ~~~~ 742 (761)
T 2xap_A 739 EDAQ 742 (761)
T ss_dssp ----
T ss_pred HHCC
T ss_conf 2124
No 5
>1peq_A Ribonucleoside-diphosphate reductase 2 alpha chain; stranded alpha/beta barrel, protein-specificity-effector complex, DTTP; HET: TTP; 2.80A {Salmonella typhimurium} SCOP: a.98.1.1 c.7.1.2 PDB: 1peo_A* 1pem_A* 1peu_A* 2bq1_E*
Probab=1.00 E-value=1 Score=1333.18 Aligned_cols=635 Identities=26% Similarity=0.433 Sum_probs=572.3
Q ss_pred HCCCCCCHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHHHHHCCCCCCC-------CCCHHHHHH--HHH-CHHHHHHH
Q ss_conf 3228998399999999998--87884121259999999761210287655-------767479999--996-19999776
Q 003561 67 MTTNHPDYASLAARIAVSN--LHKNTKKSFSETIKDMYNHYNERSGLKAP-------LIADDIYEI--IMK-NAACLDSE 134 (811)
Q Consensus 67 ~~~~~p~y~~lA~Rl~~~~--l~k~~~~~~~~~~~~~~~~~~~~~~~~~~-------l~~~~~~~~--~~~-~~~~l~~~ 134 (811)
....+|||..||+||.+.+ ++++..++|..+...+++|++++++.+.+ ++++++|+. +.. +.++|++.
T Consensus 9 ~~~~~~~y~~l~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~y~~~~~~~y~~~~l~~~ 88 (714)
T 1peq_A 9 VMQETMDYHALNAMLNLYDKAGHIQFDKDQQAIDAFFATHVRPHSVTFASQHERLGTLVREGYYDDAVLARYDRAFVLRL 88 (714)
T ss_dssp CSCCCCCHHHHHHGGGCCCTTSCCCTHHHHHHHHHHHHHTHHHHBCCCSCHHHHHHHHHHTTSBCHHHHTTSCHHHHHHH
T ss_pred HCCCCCCHHHHHHHHCCCCCCCCCCCCCHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHCCCCCHHHHHHCCHHHHHHH
T ss_conf 55689889999987833256786435101999999999865240467888899999887167546898975589999999
Q ss_pred HCC--CCCCCC-CHHHHHHHHHHHCCCC-CCC-CCCCHHHHHHHHHHHHCCCCHHHHHHHHHHHHCCCEECCCCCCCCCC
Q ss_conf 201--246899-8056999998623634-992-14898999999996730489899999999975390861661001468
Q 003561 135 IIY--DRDFDY-DYFGFKTLERSYLLKV-QGK-VVERPQHMLMRVSIGIHKDDIDSAIKTYHMMSQRWFTHASPTLFNAG 209 (811)
Q Consensus 135 i~~--~rd~~~-~y~g~~~l~~~Yllk~-~g~-~~E~pq~~~~rvA~~l~~~~~~~~~~~y~~ls~~~~~~atP~l~naG 209 (811)
+++ ++|+.| +|+|+++|+++|++|. +|+ ++|+||+++||||++++..+.+++++||++|++++|+||||||+|+|
T Consensus 89 ~~~~~~~~~~f~~y~g~~~l~~~Y~lk~~~g~~~~E~~~~~~~rvA~~la~~~~~~a~~~y~~ls~~~f~patPtl~NaG 168 (714)
T 1peq_A 89 FEHAHASGFRFQTFLGAWKFYTSYTLKTFDGKRYLEHFEDRVTMVALTLAQGDETLATQLTDEMLSGRFQPATPTFLNCG 168 (714)
T ss_dssp HHHHHHSCCCCSSHHHHHHHHHHTSCBCTTSSSBCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTSEEECHHHHHHTT
T ss_pred HHHHHHCCCCCCCHHHHHHHHHHCCCCCCCCCEEECCHHHHHHHHHHHHCCCCHHHHHHHHHHHHHCCCCCCCHHHHCCC
T ss_conf 85666327877765899999987065169999884789999999999974578899999999998288666873554077
Q ss_pred CC-CCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHCCCCCEEECEECCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHH
Q ss_conf 88-88877632212348988889999999999997529741120012379984358888667742079999999999751
Q 003561 210 TP-RPQLSSCFLVCMKDDSIEGIYETLKECAVISKSAGGIGVSVHNIRATGSYIRGTNGTSNGIVPMLRVFNDTARYVDQ 288 (811)
Q Consensus 210 t~-~~~lsSCfl~~~~~Ds~~~I~~~~~~~a~isk~ggGvG~~~s~iR~~Gs~I~g~~g~ssG~vp~lk~~~~~~~~v~q 288 (811)
++ ++||+||||+.+ +||++||+++++++++++|.|||||+|+|+|||+|++|+|++|+|||||||||+||+++.+|+|
T Consensus 169 t~~~~qlssCFl~~v-~Dsle~I~~~~~~~a~l~k~gGGvG~~~s~iR~~Gs~I~g~~g~ssG~vpfmk~~d~~~~~v~Q 247 (714)
T 1peq_A 169 KQQRGELVSCFLLRI-EDNMESIGRAVNSALQLSKRGGGVAFLLSNLREAGAPIKRIENQSSGVIPVMKMLEDAFSYANQ 247 (714)
T ss_dssp BSSCCCSCCCEEECC-CSSHHHHHHHHHHHHHHHTTTCEEEEECTTSCCTTCCBTTBSSCCCCSHHHHHHHHHHHHHC--
T ss_pred CCCCCCCCCEECCCC-CCCHHHHHHHHHHHHHHHHCCCCCEEEECCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHC
T ss_conf 787777552236778-9877789999999999985389706740234678773567788788746899999999999861
Q ss_pred CCCCCCCCEEEECCCCCCCHHHHHHHHHCCCCCCCCCCCCCEECCCCHHHHHHHHCCCCEEEECCCCCCCCHHHHHHH--
Q ss_conf 897334631761368863389999811107832101123430012498989999719966876678779612223157--
Q 003561 289 GGGKRKGAFAVYLEPWHADIFEFLNLKKNHGKEEHRARDLFYALWVPDLFMERVQTNGQWSLFCPNEASGLADCWGAE-- 366 (811)
Q Consensus 289 gG~~R~Ga~~vyl~~wH~DI~~fl~~K~~~g~~~~r~~~l~~~v~i~d~Fm~rv~~~~~w~Lf~P~~~~~L~~~~g~e-- 366 (811)
|| +||||.|+||++|||||++||++|+++|++++|++++|+||||||+||+||++|++|+||+|+++ .++||.+
T Consensus 248 gG-~RrGA~~vyL~~~HpDI~eFl~~K~~~gde~~r~~~l~~~v~ipD~Fm~~v~~d~~w~Lf~P~~~---~~~~G~~~~ 323 (714)
T 1peq_A 248 LG-ARQGAGAVYLHAHHPDILRFLDTKRENADEKIRIKTLSLGVVIPDITFRLAKENAQMALFSPYDI---QRRYGKPFG 323 (714)
T ss_dssp -----CCEEEEEEETTSTTHHHHHGGGC--------CCSCEEEEECCSHHHHHHHTTCEEEEECHHHH---HHHHSSCGG
T ss_pred CC-CCCCCEEEEECCCCCHHHHHHHHCCCCCCHHHHHHHHHHHHCCCHHHHHHHHCCCCEEEECCCCC---HHHCCCCCC
T ss_conf 68-66784148836887169999997013651455566511442549999999986997063577532---443286400
Q ss_pred ---HHHHHHHHHHCC-CEEEEEEHHHHHHHHHHHHHHHCCCEEEEHHHHHHHCCCCCCCCEEEECCCCCCCCCCCCCC--
Q ss_conf ---999999998619-40389828999999999888528730472023653168788882442148852344589996--
Q 003561 367 ---FEKLYTHYEREG-KAKKVVQAQNLWFEILTSQIETGTPYMLFKDTCNRKSNQQNLGTIKSSNLCTEIIEYTSPTE-- 440 (811)
Q Consensus 367 ---F~~~Y~~~e~~~-~~~~~v~Ar~l~~~I~~~~~~tG~P~i~f~D~~Nr~~~~~~~g~I~~sNlC~EI~~~~~~~e-- 440 (811)
|++.|+++++++ ..+++|+||+||++|++++|+||+|||+|+|+||++||++ |+|++||||+||+|+++|++
T Consensus 324 ~~~~~~~Y~~~~~~~~i~~~~v~Ar~L~~~I~~~~~etG~P~i~f~D~~N~~~~~~--g~I~~SNlC~EI~~~~~p~~~~ 401 (714)
T 1peq_A 324 DIAISERYDELIADPHVRKTYINARDFFQTLAEIQFESGYPYIMFEDTVNRANPIA--GRINMSNLCSEILQVNSASRYD 401 (714)
T ss_dssp GSCHHHHHHHHHHCTTSCEEEEEHHHHHHHHHHHHHHHSCCEEECHHHHHHHCCSS--SCCCCCCTTSCCCCCCCCCEEC
T ss_pred CCCHHHHHHHHHHCCCEEEEEEEHHHHHHHHHHHHHHHCCCEEEEHHHHHHCCCCC--CEEEECCCCCCEECCCCCCCCC
T ss_conf 13368999999757871467860999999999999996897598736666349988--7365057652000357754345
Q ss_pred ----------CEEEEECCCCCCHHCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHCCCC-CHHH
Q ss_conf ----------13587044561010002798877898642245799986679789999999999999999840899-6799
Q 003561 441 ----------TAVCNLASIALPRFVREKDVPVESHPSRIVGSRGSKNRFFDFEKLAEVTAIVTENLNKIIDVNYY-PVET 509 (811)
Q Consensus 441 ----------~~~CnL~SInL~~~v~~~~~~~~~~~~~~~~~~~~~~~~fd~~~l~~~v~~avr~LD~vid~~~~-p~~~ 509 (811)
.++|||+||||++|+.. ++|+++|+++||+||+|||.+.+ |+|+
T Consensus 402 ~~~~~~~~G~~~~CNL~SiNL~~~v~~-------------------------~~l~~~v~~avr~Ld~Vid~~~~~~~p~ 456 (714)
T 1peq_A 402 DNLDYTHIGHDISCNLGSLNIAHVMDS-------------------------PDIGRTVETAIRGLTAVSDMSHIRSVPS 456 (714)
T ss_dssp TTSCEEECCCCEECEEEEEEHHHHHTC-------------------------SCHHHHHHHHHHHHHHHHHTCCCTTCHH
T ss_pred CCCCCCCCCCCCCCCCHHHHHHHHCCH-------------------------HHHHHHHHHHHHHHHHHHHHHCCCCCHH
T ss_conf 554324568867633263338975587-------------------------8899999999999999876423688799
Q ss_pred HHHHHHCCCCEEEECCHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC-CCCCCCCCCCCCCCCCCC
Q ss_conf 9998610497032340399999991999999988999999999999999999999999819-999998896666877753
Q 003561 510 ARRSNLRHRPIGIGVQGLADTFILLGMAFESPEAQQLNKDIFETIYYHALKTSSEIAAKEG-PYETYHNSPVSKGILQPD 588 (811)
Q Consensus 510 ~~~~~~~~R~iGiGv~Glad~L~~~gi~y~S~ea~~l~~~i~e~i~~~a~~aS~eLAke~G-~~~~f~~S~~~~G~l~~d 588 (811)
++++++++|+||||+|||||+|+++|++|+|+||++|+++|||.|+|+|++||++||+|+| +||.|++|+|++|++ ||
T Consensus 457 ~~~~~~~~R~IGlGv~Glad~L~~~gi~Y~S~ea~~~~~~i~e~i~~~A~~aS~eLA~E~G~~f~~f~~s~~~~G~~-f~ 535 (714)
T 1peq_A 457 IAAGNAASHAIGLGQMNLHGYLAREGIAYGSPEALDFTNLYFYTITWHAVHTSMRLARERGKTFAGFAQSRYASGDY-FT 535 (714)
T ss_dssp HHHHHHHHCCEEEEEECHHHHHHHTTCCTTSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCCCTTGGGSHHHHSHH-HH
T ss_pred HHHHHHHCCCEEEEHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCHHHCCCH-HH
T ss_conf 99998824870771878999999769987999999999999999999999999999998499875656583423544-55
Q ss_pred CC-------------------CCCCCCCCCHHHHHHHHHHCCCCCCCEECCCCCCCCCCCCCCCCCCCCCCCCEEEEECC
Q ss_conf 44-------------------56999713489999999842865441012599986000047975222355450678814
Q 003561 589 MW-------------------NVIPSDRWDWGVLRDMISKNGVRNSLLVAPMPTASTSQILGNNECFEPYTSNIYSRRVL 649 (811)
Q Consensus 589 ~~-------------------~~~~~~~~dW~~Lr~~i~~~GlRNs~l~AiaPT~s~S~i~g~s~gieP~~s~~y~r~~~ 649 (811)
.| +..++..+||++||++|++||+|||+++|||||||||+|+|+|+||||+++++|+|++.
T Consensus 536 ~~~~~~~~p~~~~v~~l~~~~~~~~~~~~dW~~Lr~~i~~~G~RNs~l~aiAPTgTiS~i~g~S~gIeP~~s~~~~r~~~ 615 (714)
T 1peq_A 536 QYLQDDWQPKTAKVRALFARSGITLPTREMWLKLRDDVMRYGIYNQNLQAVPPTGSISYINHATSSIHPIVAKIEIRKEG 615 (714)
T ss_dssp HHHSSCCSCSSHHHHHHHHHHTCCCCCHHHHHHHHHHHHHHCCSCSCCBCBCCCCTHHHHHTCCSSSSCCSCSEEEECCS
T ss_pred HCCCCCCCCCCHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHCCCHHHEEEECCCCCCHHHCCCCCCCCCCCCCEEEEECC
T ss_conf 31442337430788887664277775254199999999984870301356358875054258887416453422577626
Q ss_pred C-CCEEEECHHHHHHHHHCCCCCHHHHHHHHCCCCCCCCCCCCCHHHHHHHHHHCCCCHHHHHHHHHHHCCCCCCCCCEE
Q ss_conf 5-743784867899999859993887634341699601368996678860100102792989999998355343464005
Q 003561 650 S-GEFVVVNKHLLHDLTEMGIWSPTIKNKIIYDDGSVQKIPEIPEELKMIYKTVWEIKQMTLVDMAVDRGCYIDQSQSLN 728 (811)
Q Consensus 650 ~-g~~~~vn~~l~~~l~~~g~~~~~~~~~i~~~~Gsv~~i~~~p~~~k~~f~tA~ei~~~~~i~~~a~~Q~~vDQsiS~n 728 (811)
+ |++.+++|++ |++++++|+|||||+|+++|+|+|++|||||||||+|
T Consensus 616 ~~g~~~~~~p~l-------------------------------~~~~~~~y~tA~ei~~~~~i~m~A~~Q~~iDqsiS~t 664 (714)
T 1peq_A 616 KTGRVYYPAPFM-------------------------------TNENLDMYQDAYDIGPEKIIDTYAEATRHVDQGLSLT 664 (714)
T ss_dssp TTSCEEEECTTC-------------------------------CTTSGGGCCCHHHHCHHHHHHHHHHHHTTCSSCBCCC
T ss_pred CCCCEEEECCCC-------------------------------CHHHHHHHCCHHHCCHHHHHHHHHHHCCCCCCCCCCE
T ss_conf 577078757764-------------------------------3335765086864999999999999767562246635
Q ss_pred EEECC-CCHHHHHHHHHHHHHCCCCEEEEEECCCCCCCC
Q ss_conf 74079-998789999999998499548998447532222
Q 003561 729 IHMDQ-PNFKKVTSLHFRTWSRGLKTGMYYLRSRAAADA 766 (811)
Q Consensus 729 l~~~~-~~~~~i~~~~~~Awk~GlKt~~YY~r~~~~~~~ 766 (811)
+|+++ .+.++|.++|++||++|||| +||+|+++.+..
T Consensus 665 l~~~~~~t~~dl~~~y~~Awk~GlKt-iYY~rs~~~~~~ 702 (714)
T 1peq_A 665 LFFPDTATTRDINKAQIYAWRKGIKS-LYYIRLRQLALE 702 (714)
T ss_dssp EEECTTCCHHHHHHHHHHHHHHTCCE-ECCEEECCC---
T ss_pred EEECCCCCHHHHHHHHHHHHHHCCCE-EEECCCCCCCCC
T ss_conf 88689999999999999999959988-998256434445
No 6
>3o0q_A Ribonucleoside-diphosphate reductase; alpha/beta barrel, adenosylcobalamin dependent, ribonucle reductase; HET: TTP GDP ADN; 1.80A {Thermotoga maritima} PDB: 1xjf_A* 1xjg_A* 1xje_A* 1xjm_A* 1xjn_A* 3o0n_A* 3o0o_A* 1xjj_A* 1xjk_A*
Probab=1.00 E-value=1 Score=1291.37 Aligned_cols=577 Identities=28% Similarity=0.434 Sum_probs=541.8
Q ss_pred HHHHHCCCCCCCCCHHHHHHHHHHHCCC-CCCCCCC-CHHHHHHHHHHHHCCCC---------------HHHHHHHHHHH
Q ss_conf 9776201246899805699999862363-4992148-98999999996730489---------------89999999997
Q 003561 131 LDSEIIYDRDFDYDYFGFKTLERSYLLK-VQGKVVE-RPQHMLMRVSIGIHKDD---------------IDSAIKTYHMM 193 (811)
Q Consensus 131 l~~~i~~~rd~~~~y~g~~~l~~~Yllk-~~g~~~E-~pq~~~~rvA~~l~~~~---------------~~~~~~~y~~l 193 (811)
+..+|+|+||..|+|+|+++|.+||++| .+|+++| +||++|||||++++..+ .+++++||++|
T Consensus 3 ~~~~~~~~~d~~~s~~a~~~l~~rYllk~~~g~~~E~spq~~~~RVA~~la~~e~~~~~~~~~~~~~~~~~~~~~fy~~l 82 (644)
T 3o0q_A 3 LSDLISRWIDVEPSKNAQIILRDRYFMKDLDGNYLETKWEDVARRVARVVATAELLNPSYKKNEKLDRIKEWEDIFFRVL 82 (644)
T ss_dssp HHHHHHHHTTCCCCHHHHHHHHHHTSCBCTTSCBSCCSHHHHHHHHHHHHHGGGGGCTTCCHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHCCCCCCCHHHHHHHHHHHCCCCCCCCCCCCCHHHHHHHHHHHHHHHCCCCCCCCCCCCCHHHHHHHHHHHHHH
T ss_conf 45543304778979999999999508328999975489999999999999864244442000011013799999999999
Q ss_pred HCCCEECCCCCCCCCCC---------C------------------CCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHCC
Q ss_conf 53908616610014688---------8------------------88877632212348988889999999999997529
Q 003561 194 SQRWFTHASPTLFNAGT---------P------------------RPQLSSCFLVCMKDDSIEGIYETLKECAVISKSAG 246 (811)
Q Consensus 194 s~~~~~~atP~l~naGt---------~------------------~~~lsSCfl~~~~~Ds~~~I~~~~~~~a~isk~gg 246 (811)
++++|+||||||+|+|+ + ++|||||||+++ +||++||+++++++++++|.||
T Consensus 83 s~~~f~patPtl~NaGt~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~qlssCFl~~v-~Dsl~~I~~~~~~~a~i~k~GG 161 (644)
T 3o0q_A 83 KARLFIPNSPTLFNAGLGVKHDLLWKPIDQMTLEDYEEIYRSRNHLHMLSACFVVPV-GDSIEEIFEAVKEYALITKVGG 161 (644)
T ss_dssp HTTSEEECHHHHHHTTTTSCHHHHSSCGGGCCHHHHHHHHHHCCTTCCCCCEEECCC-CSSHHHHHHHHHHHHHHHHTTC
T ss_pred HHCCEECCCHHHHCCCCCCCCCCCCCCHHHCCCCCHHHHCCCCCCCCCCCCEEECCC-CCCHHHHHHHHHHHHHHHHHCC
T ss_conf 809873488676458887643434577021022100000124446777613594388-9888999999999999986089
Q ss_pred CCCEEECEECCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHCCCCCCCCEEEECCCCCCCHHHHHHHHHC-CCCCCCCC
Q ss_conf 74112001237998435888866774207999999999975189733463176136886338999981110-78321011
Q 003561 247 GIGVSVHNIRATGSYIRGTNGTSNGIVPMLRVFNDTARYVDQGGGKRKGAFAVYLEPWHADIFEFLNLKKN-HGKEEHRA 325 (811)
Q Consensus 247 GvG~~~s~iR~~Gs~I~g~~g~ssG~vp~lk~~~~~~~~v~qgG~~R~Ga~~vyl~~wH~DI~~fl~~K~~-~g~~~~r~ 325 (811)
|||++||+|||+|++|+|++|+|||||||||+||+++.+|+||| +||||.|+||++|||||++||++|++ .|+ .|.
T Consensus 162 GiG~~~s~iR~~Gs~I~g~~g~ssG~vpfmk~~d~~~~~v~QgG-~RrGA~~~yL~~~HpDI~eFl~~K~~n~g~--~~~ 238 (644)
T 3o0q_A 162 GVGSNFSELRPKGSFVAGTHGKASGPVSFMHVFNSAISVVKQGS-RRRGALMGILNINHPDIEEFIDAKKENTGE--AVL 238 (644)
T ss_dssp EEEEECTTSCCTTCEETTTTEECCCHHHHHHHHHHHHTTCEETT-TEECCEEEEEETTSTTHHHHHTCC---------CC
T ss_pred CCEEECCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHCCC-CCCCCEEEEECCCCCCHHHHHHHHCCCCCC--CCE
T ss_conf 73120034489988024568846885109999999999997079-655505799648984799999983436675--434
Q ss_pred CCCCEECCCC---HHHHHHHHCCCCEEEECCCCCCCCHHHHHHHHHHHHHHHHHCCCEEEEEEHHHHHHHHHHHHHHHCC
Q ss_conf 2343001249---8989999719966876678779612223157999999998619403898289999999998885287
Q 003561 326 RDLFYALWVP---DLFMERVQTNGQWSLFCPNEASGLADCWGAEFEKLYTHYEREGKAKKVVQAQNLWFEILTSQIETGT 402 (811)
Q Consensus 326 ~~l~~~v~i~---d~Fm~rv~~~~~w~Lf~P~~~~~L~~~~g~eF~~~Y~~~e~~~~~~~~v~Ar~l~~~I~~~~~~tG~ 402 (811)
+++|++|+|| |+||+||++|++|+||+|. |..+++|+||+||++|++++|+||+
T Consensus 239 ~~~n~sv~i~~~pD~Fm~~v~~d~~w~L~~P~-----------------------g~~~~~v~Ar~L~~~I~~~~~etG~ 295 (644)
T 3o0q_A 239 NFFNLSVGFPMDKKEILKLYEEDGELELSHPR-----------------------STIRKKVKIRELFRKIATNAWKSGD 295 (644)
T ss_dssp TTEEEEEECCSCHHHHHHHHHTTCEEEECCTT-----------------------CCCCEEEEHHHHHHHHHHHHHHHSC
T ss_pred EECCEEEEECCCHHHHHHHHHCCCCEEEECCC-----------------------CCEEEEECHHHHHHHHHHHHHHHCC
T ss_conf 63213577278889999999749986968899-----------------------9653226199999999999999789
Q ss_pred CEEEEHHHHHHHCCCCCCCCEEEECCCCCCCCCCCCCCCEEEEECCCCCCHHCCCCCCCCCCCCCCCCCCCCCCCCCCCH
Q ss_conf 30472023653168788882442148852344589996135870445610100027988778986422457999866797
Q 003561 403 PYMLFKDTCNRKSNQQNLGTIKSSNLCTEIIEYTSPTETAVCNLASIALPRFVREKDVPVESHPSRIVGSRGSKNRFFDF 482 (811)
Q Consensus 403 P~i~f~D~~Nr~~~~~~~g~I~~sNlC~EI~~~~~~~e~~~CnL~SInL~~~v~~~~~~~~~~~~~~~~~~~~~~~~fd~ 482 (811)
|||+|+|+||++||+++.|+|++||||+||++++ .++|||+||||++|+.+ ..|||
T Consensus 296 Pgi~f~D~~N~~~~~~~~g~I~~SNlC~Ei~l~~----~~~CNLgSiNL~~~v~~--------------------~~fD~ 351 (644)
T 3o0q_A 296 PGLAFLGEMNKYYPLYPHRKINSTNPCGEIGLSD----YEACNLGSIDVAKFYNN--------------------GFVDL 351 (644)
T ss_dssp CEEECHHHHHHTCTTTTTSCEEEECTTSCCEEET----TCEEEEEEEEGGGGEET--------------------TEECH
T ss_pred CEEEEHHHHHHCCCCCCCCCEEECCCCCCCCCCC----CCCEEHHHHHHHHHHCC--------------------CCCCH
T ss_conf 8499826677569875677266336766312589----98567099889998545--------------------88799
Q ss_pred HHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHCCCCEEEECCHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf 89999999999999999840899679999986104970323403999999919999999889999999999999999999
Q 003561 483 EKLAEVTAIVTENLNKIIDVNYYPVETARRSNLRHRPIGIGVQGLADTFILLGMAFESPEAQQLNKDIFETIYYHALKTS 562 (811)
Q Consensus 483 ~~l~~~v~~avr~LD~vid~~~~p~~~~~~~~~~~R~iGiGv~Glad~L~~~gi~y~S~ea~~l~~~i~e~i~~~a~~aS 562 (811)
+.|+++|+++||+||+|||.+.||+|+++++++++|+||||+|||||+|+++|++|+|+||++|+++|||.|+|+|++||
T Consensus 352 ~~l~~~v~~avr~LD~VId~~~~P~~~~~~~~~~~R~IGLGv~Glad~L~~~gi~Y~S~ea~~~~~~i~e~i~~~A~~aS 431 (644)
T 3o0q_A 352 EALQELVQIAVRFLDNVIDVNVFPIDKITKAVKESRRLGLGIMGFADLLYKLEIPYNSQEARDFAANLMAFIALHAHRTS 431 (644)
T ss_dssp HHHHHHHHHHHHHHHHHHHHCCCSSHHHHHHHHHHCCEEEEEECHHHHHHHHTCCSSSHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHCCCCCCCHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHHHHH
T ss_conf 99999999999999999961447679999998613765506377999999769887999999999999999999999999
Q ss_pred HHHHHHHCCCCCCCCCCC--CCCCCCCCCCCCCCCCCCCHHHHHHHHH--HCCCCCCCEECCCCCCCCCCCCCCCCCCCC
Q ss_conf 999998199999988966--6687775344569997134899999998--428654410125999860000479752223
Q 003561 563 SEIAAKEGPYETYHNSPV--SKGILQPDMWNVIPSDRWDWGVLRDMIS--KNGVRNSLLVAPMPTASTSQILGNNECFEP 638 (811)
Q Consensus 563 ~eLAke~G~~~~f~~S~~--~~G~l~~d~~~~~~~~~~dW~~Lr~~i~--~~GlRNs~l~AiaPT~s~S~i~g~s~gieP 638 (811)
++||+|+|+||.|++|+| .+|++|++.|. ..+|++||++|+ +||+|||+++|||||||||+|+|+|+||||
T Consensus 432 ~eLA~e~G~f~~f~~s~~~~~~g~~~~~~~~-----~~~W~~Lr~~i~~~~~G~RNs~l~aiAPTgSiS~i~g~s~gIEP 506 (644)
T 3o0q_A 432 YELGKEKGNFPLLEISRYRTEDNFVPFAMGM-----SNYDDEIREVMKMTKEFRRNVALLTIAPTGSISNIADTSSGLEP 506 (644)
T ss_dssp HHHHHHHCCCTTGGGSHHHHSSSCCSSCCCS-----CTTHHHHHHHHHHTTTCCSCSCCBCBCCCTTHHHHTTSCCTTCC
T ss_pred HHHHHHHCCCCCCCCCCHHCCCCCCCCCCCC-----CCCHHHHHHHHHHCCCCCEEHHEECCCCCCCHHHHCCCCCCCCC
T ss_conf 9999986899775668001148841136443-----11389999998751147300000214888660221388776460
Q ss_pred CCCCEEEEECC--CCC---EEEECHHHHHHHHHCCCCCHHHHHHHHCCCCCCCCCCCCCHHHHHHHHHHCCCCHHHHHHH
Q ss_conf 55450678814--574---3784867899999859993887634341699601368996678860100102792989999
Q 003561 639 YTSNIYSRRVL--SGE---FVVVNKHLLHDLTEMGIWSPTIKNKIIYDDGSVQKIPEIPEELKMIYKTVWEIKQMTLVDM 713 (811)
Q Consensus 639 ~~s~~y~r~~~--~g~---~~~vn~~l~~~l~~~g~~~~~~~~~i~~~~Gsv~~i~~~p~~~k~~f~tA~ei~~~~~i~~ 713 (811)
+|+++|.|+++ +|+ |.++|++|+++|+++ |++++++.|. .+|++|++|.+|++++++|+|||||+|+++|+|
T Consensus 507 ~~s~~y~R~~~~~~G~~~~~~~vn~~l~~~l~~~--~~~~~~~~i~-~~Gsv~~~~~lp~~~~~~f~tA~ei~~~~~I~m 583 (644)
T 3o0q_A 507 NFLLAYTRFVTKEDGTKEPLLYVNQVLREKLNPE--ILKRIEKELI-EKGSLKDIPDVPEKIKKVFVVALDIDPMDHLLM 583 (644)
T ss_dssp CSCSEEEEC---------CEEEECHHHHHHSCHH--HHHHHHHHHH-HHSSSTTCTTSCHHHHHHSCCGGGSCHHHHHHH
T ss_pred CCCCEEEEEEECCCCCCCCEEEECHHHHHHHHHH--CCHHHHHHHH-HCCCCCCCCCCCHHHHHHCCCHHHCCHHHHHHH
T ss_conf 5232588972036787221266678999999986--4499999998-569834666689778867051975999999999
Q ss_pred HHHHCCCCCCCCCEEEEECC-CCHHHHHHHHHHHHHCCCCEEEEEECCCCCCCC
Q ss_conf 99835534346400574079-998789999999998499548998447532222
Q 003561 714 AVDRGCYIDQSQSLNIHMDQ-PNFKKVTSLHFRTWSRGLKTGMYYLRSRAAADA 766 (811)
Q Consensus 714 ~a~~Q~~vDQsiS~nl~~~~-~~~~~i~~~~~~Awk~GlKt~~YY~r~~~~~~~ 766 (811)
+|++|||||||||+|+|+++ ++.++|.++|++||++||||++||....+..+.
T Consensus 584 ~A~~Q~~iDqs~S~tln~p~~~t~~d~~~~y~~Awk~GlK~~t~YR~gs~~~qv 637 (644)
T 3o0q_A 584 QDAFQRYVDNNISKTINMPQSATVDDVLNVYLEALRTNVRGITVYRDGSLQTQV 637 (644)
T ss_dssp HHHHHTTCSSCBCCEEEECTTCCHHHHHHHHHHHHHSSCSEEEEEETTCC----
T ss_pred HHHHCCCCCCCCCCEEECCCCCCHHHHHHHHHHHHHHCCCEEEEECCCCCCCCC
T ss_conf 999776240306552656899999999999999999689889998899864353
No 7
>1l1l_A Ribonucleoside triphosphate reductase; 10-stranded alpha-beta barrel, central finger loop, oxidoreductase; 1.75A {Lactobacillus leichmannii} SCOP: c.7.1.4
Probab=1.00 E-value=1 Score=916.60 Aligned_cols=510 Identities=19% Similarity=0.227 Sum_probs=429.3
Q ss_pred CHHHHHHHHCCCCCCCCCHHHHHHHHHHHCCCC-CCCCCCCHHHHHHHHHHHHCCCC---------------HHHHHHHH
Q ss_conf 199997762012468998056999998623634-99214898999999996730489---------------89999999
Q 003561 127 NAACLDSEIIYDRDFDYDYFGFKTLERSYLLKV-QGKVVERPQHMLMRVSIGIHKDD---------------IDSAIKTY 190 (811)
Q Consensus 127 ~~~~l~~~i~~~rd~~~~y~g~~~l~~~Yllk~-~g~~~E~pq~~~~rvA~~l~~~~---------------~~~~~~~y 190 (811)
.+++++..|.+.+|. +|..+++++|++|. +|+..|+||+++||||++++..+ .+++++||
T Consensus 11 f~~~~~~~~~p~~~~----~g~~~~~r~Y~~~~~~g~~~E~~~e~~~RVa~g~~~~~~~~~~~~~~~~~~~~~~~a~~~y 86 (739)
T 1l1l_A 11 FIDRVKASVKPHWGK----LGWVTYKRTYARWLPEKGRSENWDETVKRVVEGNINLDPRLQDSPSLELKQSLTEEAERLY 86 (739)
T ss_dssp HHHHHHHHCCCCCCT----THHHHHHTTTCCEETTTTEECCHHHHHHHHHHHHHTTCGGGGSCCCHHHHHHHHHHHHHHH
T ss_pred HHHHHCCCCCCCCCH----HHHHHHHHHCCCCCCCCCEECCHHHHHHHHHHHHHHHHHHCCCCCCCCCCHHHHHHHHHHH
T ss_conf 999840767999676----5799998505047799996358999999999999864022035532121024699999999
Q ss_pred HHHHCCCEECCCCCCCCCCCCC----C-CCCCCCCCCCC-----------------------------------------
Q ss_conf 9975390861661001468888----8-87763221234-----------------------------------------
Q 003561 191 HMMSQRWFTHASPTLFNAGTPR----P-QLSSCFLVCMK----------------------------------------- 224 (811)
Q Consensus 191 ~~ls~~~~~~atP~l~naGt~~----~-~lsSCfl~~~~----------------------------------------- 224 (811)
++|++++|+||||||+|+||+. + ||+|||++.+.
T Consensus 87 ~~m~~~~~~pa~ptL~naGt~~~~~~~~~l~sCf~~~v~~~~~~Ds~~~~~~l~~~~~~~~~~f~~i~~~~~~GgGvG~~ 166 (739)
T 1l1l_A 87 KLIYGLGATPSGRNLWISGTDYQRRTGDSLNNCWFVAIRPQKYGDSKIVPSYLGKQEKAVSMPFSFLFDELMKGGGVGFS 166 (739)
T ss_dssp HHHHTTSEEECHHHHHHTTSHHHHTSTTTTCCEEEEECSCEECCSCSCCCTTSCSSCEETTHHHHHHHHHHHTTCEEEEE
T ss_pred HHHHHCCEECCCHHHHHCCCCCCCCCCCCEEEEEEEECCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHCCCCCCEE
T ss_conf 99983973246827762688765567872110387202654455421122222211123223489999999608877622
Q ss_pred ------------------------------------------------------CCCHHHHHHHHHHHHHHHHH------
Q ss_conf ------------------------------------------------------89888899999999999975------
Q 003561 225 ------------------------------------------------------DDSIEGIYETLKECAVISKS------ 244 (811)
Q Consensus 225 ------------------------------------------------------~Ds~~~I~~~~~~~a~isk~------ 244 (811)
+||++||++++.. ++++.
T Consensus 167 ~~~~~i~~lp~v~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~v~DS~eGi~~~~~a--li~~~~~~~~~ 244 (739)
T 1l1l_A 167 VARSNISQIPRVDFAIDLQLVVDETSESYDASVKVGAVGKNELVQDADSIYYRLPDTREGWVLANAL--LIDLHFAQTNP 244 (739)
T ss_dssp CCHHHHTTSCCCCCCCEEEEECCTTSTTHHHHHHTTCBCTTTCCCCTTCEEEECCSSHHHHHHHHHH--HHHTTSGGGCT
T ss_pred CCCCCCCCCCCCCCCCCEEEEECCCCCCCCCCCCCCCCCHHHHCCCCCCEEEECCCCHHHHHHHHHH--HHHHHHCCCCC
T ss_conf 1522000178644443203541355422110111355562330246663045458865579999999--99974124555
Q ss_pred --CCCCCEEECEECCCCCCCCCCCCCCCCCCCHHHHHHHH------------------------HHHHHHCCCCCCCCEE
Q ss_conf --29741120012379984358888667742079999999------------------------9997518973346317
Q 003561 245 --AGGIGVSVHNIRATGSYIRGTNGTSNGIVPMLRVFNDT------------------------ARYVDQGGGKRKGAFA 298 (811)
Q Consensus 245 --ggGvG~~~s~iR~~Gs~I~g~~g~ssG~vp~lk~~~~~------------------------~~~v~qgG~~R~Ga~~ 298 (811)
+||||+|||+|||+|++|+|++|+|||||||||+|+++ +.+|+||| +||||.|
T Consensus 245 ~~~gGiG~~~S~IRp~Gs~Ikg~~G~ssG~vpf~k~~~~~~~i~~~~~g~~l~~~d~~di~~~i~~~V~QGG-~RrGA~m 323 (739)
T 1l1l_A 245 DRKQKLILDLSDIRPYGAEIHGFGGTASGPMPLISMLLDVNEVLNNKAGGRLTAVDAADICNLIGKAVVAGN-VRRSAEL 323 (739)
T ss_dssp TCCCEEEEECTTSCCTTCBCTTSSSBCCCSHHHHHHHHHHHHHHHTTTTSCCCHHHHHHHHHHHHHHHHTTC-----CEE
T ss_pred CCCCCEEEECCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHCCC-CCCCCEE
T ss_conf 678835874243588988257889858881779999999998764300333443002235677778886079-6566337
Q ss_pred EECCCCCCCHHHHHHHHHCCCCCCCCCCCCCEECCCCHHHHHHHHCCCCEEEECCCCCCCCHHHHHHHHHHHHHHHHHCC
Q ss_conf 61368863389999811107832101123430012498989999719966876678779612223157999999998619
Q 003561 299 VYLEPWHADIFEFLNLKKNHGKEEHRARDLFYALWVPDLFMERVQTNGQWSLFCPNEASGLADCWGAEFEKLYTHYEREG 378 (811)
Q Consensus 299 vyl~~wH~DI~~fl~~K~~~g~~~~r~~~l~~~v~i~d~Fm~rv~~~~~w~Lf~P~~~~~L~~~~g~eF~~~Y~~~e~~~ 378 (811)
+|| ||||++||++|+++|+.+..-..+|+||+|||+||
T Consensus 324 ~~l---~pDi~eFi~~K~~~g~~~~~~~~~n~Sv~v~D~Fm--------------------------------------- 361 (739)
T 1l1l_A 324 ALG---SNDDQDFISMKQDQEKLMHHRWASNNSVAVDSAFS--------------------------------------- 361 (739)
T ss_dssp EEE---ETTCHHHHHGGGCHHHHHHTGGGEEEEEEECTTCC---------------------------------------
T ss_pred EEE---CCCHHHHHHHCCCCCHHHCCCCCCCCEEEECHHHH---------------------------------------
T ss_conf 997---83689999857220111122112573356478999---------------------------------------
Q ss_pred CEEEEEEHHHHHHHHHHHHHHHCCCEEEEHHHHHHH------CCCCCCCCEEEECCCCCCCCCCCCCCCEEEEECCCCCC
Q ss_conf 403898289999999998885287304720236531------68788882442148852344589996135870445610
Q 003561 379 KAKKVVQAQNLWFEILTSQIETGTPYMLFKDTCNRK------SNQQNLGTIKSSNLCTEIIEYTSPTETAVCNLASIALP 452 (811)
Q Consensus 379 ~~~~~v~Ar~l~~~I~~~~~~tG~P~i~f~D~~Nr~------~~~~~~g~I~~sNlC~EI~~~~~~~e~~~CnL~SInL~ 452 (811)
+|.+|++++|+||+||++|+|+||++ +|+++.|+|++||||+||+|++ .++|||+|||
T Consensus 362 ----------~~~~I~~~~~etGePgi~f~D~~N~~~~~~~~~~~~~~g~I~~SNpC~EI~l~~----~~~CNL~Sin-- 425 (739)
T 1l1l_A 362 ----------GYQPIAAGIRENGEPGIVNLDLSKNYGRIVDGYQAGIDGDVEGTNPCGEISLAN----GEPCNLFEVF-- 425 (739)
T ss_dssp ----------CHHHHHHHHHHHSCCEEEEHHHHHHCSSGGGCCCTTTTTTEEEECTTCCSEEET----TCBCCEEEEC--
T ss_pred ----------HHHHHHHHHHHCCCCEEEECHHHHCCCCCCCCCCCCCCCCEEECCCCEEEECCC----CCCCCHHHHH--
T ss_conf ----------999999999870898067225443125433457755576178548660241146----7733505443--
Q ss_pred HHCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHCCCCEEEECCHHHHHHH
Q ss_conf 10002798877898642245799986679789999999999999999840899679999986104970323403999999
Q 003561 453 RFVREKDVPVESHPSRIVGSRGSKNRFFDFEKLAEVTAIVTENLNKIIDVNYYPVETARRSNLRHRPIGIGVQGLADTFI 532 (811)
Q Consensus 453 ~~v~~~~~~~~~~~~~~~~~~~~~~~~fd~~~l~~~v~~avr~LD~vid~~~~p~~~~~~~~~~~R~iGiGv~Glad~L~ 532 (811)
.|+.. .|||+ |+++++++||+||+| |.+.||+|+++++++++|+||||+|||||+|+
T Consensus 426 ~~v~~---------------------~~d~~-l~~~v~~avr~LdnV-d~~~yp~~~~~~~~~~~R~IGlGv~Glad~L~ 482 (739)
T 1l1l_A 426 PLIAE---------------------EQGWD-LQEVFALAARYAKRV-TFSPYDWEISREIIQKNRRIGISMSGIQDWLL 482 (739)
T ss_dssp HHHHH---------------------HTTCC-HHHHHHHHHHHHHHH-TTSCCSCHHHHHHHHHHCCCEEEECSHHHHHH
T ss_pred HHCCC---------------------CCCHH-HHHHHHHHHHHHHHH-HHCCCCCHHHHHHHHHCCCCCCCCCCHHHHHH
T ss_conf 11034---------------------43277-999999999997762-53047709999999857932325665999999
Q ss_pred -HCCCCC----CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCC--CCCCCCCCCCCCCCCCCCCCHHHHHH
Q ss_conf -919999----99988999999999999999999999999819999998896--66687775344569997134899999
Q 003561 533 -LLGMAF----ESPEAQQLNKDIFETIYYHALKTSSEIAAKEGPYETYHNSP--VSKGILQPDMWNVIPSDRWDWGVLRD 605 (811)
Q Consensus 533 -~~gi~y----~S~ea~~l~~~i~e~i~~~a~~aS~eLAke~G~~~~f~~S~--~~~G~l~~d~~~~~~~~~~dW~~Lr~ 605 (811)
++|++| +|.+|.+ | +|+|++|.|+++. ..++++.. ....+|+.
T Consensus 483 ~~~gi~Y~~~y~s~~a~e-------------------l-~e~g~~~~~~~~~~~~~~~~~~~-------~~~~~w~~--- 532 (739)
T 1l1l_A 483 TRLGNRVVTGFKDDFDPE-------------------T-HEAIKVPVYDKRAIKMVDQLYKA-------VVKADQDY--- 532 (739)
T ss_dssp HHHSSCSEEEEEEEECTT-------------------T-CCEEEEEEECHHHHHHHHHHHHH-------HHHHHHHH---
T ss_pred HHHCCCCCCCCCCHHHHH-------------------H-HHHCCCCCCCHHHHHHHHHHHHH-------HHHHHHHH---
T ss_conf 980987320004788899-------------------7-65347654588899999999998-------89999998---
Q ss_pred HHHHCCCCCC-CEECCCCCCCCCCCCCCCCCCCCCCCCEEEEECCCCCEEEECHHHHHHHHHCCCCCHHHHHHHHCCCCC
Q ss_conf 9984286544-101259998600004797522235545067881457437848678999998599938876343416996
Q 003561 606 MISKNGVRNS-LLVAPMPTASTSQILGNNECFEPYTSNIYSRRVLSGEFVVVNKHLLHDLTEMGIWSPTIKNKIIYDDGS 684 (811)
Q Consensus 606 ~i~~~GlRNs-~l~AiaPT~s~S~i~g~s~gieP~~s~~y~r~~~~g~~~~vn~~l~~~l~~~g~~~~~~~~~i~~~~Gs 684 (811)
++++|+||| +++|||||||+|+|+|+|+||||+|+++|.|++ +|..+|++ +++|++.|+|+++ .+..++|+
T Consensus 533 -~~~~G~rns~~ltaIAPTgTiS~i~g~S~GIEP~~a~~~~rr~---~~~~~n~~-~~~l~~~g~~~~~---~i~~~~g~ 604 (739)
T 1l1l_A 533 -SKTLGCNESIKHTTVKPSGTVAKLAGASEGMHFHYGAYLIQRI---RFQDSDPL-LPALKACGYRTEA---DIYTENTT 604 (739)
T ss_dssp -HHHHTCCCCSCCEEBCCCHHHHHHHTCCCTTCCBSCSEEEEEE---EEETTCTH-HHHHHHTTCEEEE---CSSSTTEE
T ss_pred -HHHHCCCCHHHEEEECCCCCHHHHCCCCCCCCCCCEEEEEEEE---EECCCCHH-HHHHHHCCCCCHH---HHHHCCCC
T ss_conf -9971877731257878983077753888732523021578986---52036658-9999973999367---77625885
Q ss_pred CCCCCC-CCHHHHHHHHHHCCCCHHHHHHHHHHHCC-CCCCCCCEEEEECCCCHHHHHHHHHHHHHCCCCEEEEEECCCC
Q ss_conf 013689-96678860100102792989999998355-3434640057407999878999999999849954899844753
Q 003561 685 VQKIPE-IPEELKMIYKTVWEIKQMTLVDMAVDRGC-YIDQSQSLNIHMDQPNFKKVTSLHFRTWSRGLKTGMYYLRSRA 762 (811)
Q Consensus 685 v~~i~~-~p~~~k~~f~tA~ei~~~~~i~~~a~~Q~-~vDQsiS~nl~~~~~~~~~i~~~~~~Awk~GlKt~~YY~r~~~ 762 (811)
|+.+|. .|++++.+|+|||||+|+++|+|+|++|| |||||||+|+|+++...++|.++ ++||+.|||| +||+|+.+
T Consensus 605 v~~ip~~~~~~~~~~f~tA~eI~~~~~i~~~A~~Q~~wiDqsiS~Ti~~~~~~~~~l~~l-~~awk~GlK~-~yylR~~~ 682 (739)
T 1l1l_A 605 CVEFPIKAVGADNPNFASAGTVSIAEQFATQAFLQTYWSDNAVSCTITFQDSEGDQVESL-LRQYRFITKS-TSLLPYFG 682 (739)
T ss_dssp EEEEEEECTTTTCTTCCBTTTSCHHHHHHHHHHHHHHTCSSCBCCEEEECGGGGGGHHHH-HHHTTTTCSE-EEEEECCC
T ss_pred EEECCCCCCHHHHHHCCCHHHCCHHHHHHHHHHHCCCCCCCCCCEEEEECCCHHHHHHHH-HHHHHHCCCE-EEEECCCC
T ss_conf 452565572446655265975899999999999663662354401688678669999999-9999837768-99966887
Q ss_pred CC
Q ss_conf 22
Q 003561 763 AA 764 (811)
Q Consensus 763 ~~ 764 (811)
++
T Consensus 683 ~t 684 (739)
T 1l1l_A 683 GS 684 (739)
T ss_dssp CC
T ss_pred CC
T ss_conf 53
No 8
>1dq3_A Endonuclease; PI-PFUI, intein-encoded, hydrolase; 2.10A {Pyrococcus furiosus} SCOP: b.86.1.2 d.50.3.1 d.95.2.2 d.95.2.2
Probab=1.00 E-value=1 Score=67.67 Aligned_cols=68 Identities=6% Similarity=-0.102 Sum_probs=62.5
Q ss_pred CCEEECEECCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHCCCCCCCCEEEECCCCCCCHHHHHHHHH
Q ss_conf 411200123799843588886677420799999999997518973346317613688633899998111
Q 003561 248 IGVSVHNIRATGSYIRGTNGTSNGIVPMLRVFNDTARYVDQGGGKRKGAFAVYLEPWHADIFEFLNLKK 316 (811)
Q Consensus 248 vG~~~s~iR~~Gs~I~g~~g~ssG~vp~lk~~~~~~~~v~qgG~~R~Ga~~vyl~~wH~DI~~fl~~K~ 316 (811)
+|.++|.|||+|+.+.++.+.++|+++|+++++.+...+.|+| .|+|+.++.+..+|||+.+|+..|.
T Consensus 1 C~~~~s~i~~~~~~~~~~~~i~~g~~~~~~i~~~v~~~i~~~g-~~~~~~~~~V~s~d~d~~k~i~~kv 68 (454)
T 1dq3_A 1 CIDGKAKIIFENEGEEHLTTMEEMYERYKHLGEFYDEEYNRWG-IDVSNVPIYVKSFDPESKRVVKGKV 68 (454)
T ss_dssp CEETTCEEEEESSSCEEEEEHHHHHHHHGGGCEEEETTTTEEE-EECTTSCCEEEEEETTTTEEEEEEE
T ss_pred CCCCCCEEEEECCCEECCCCCCCCCHHHHHHHHHHHHHHHHCC-CEECCCCEEEEEECCCCCEEEEEEE
T ss_conf 9988767999089705024303452313546667777787429-3726876799997077787999675
No 9
>1h7b_A Anaerobic ribonucleotide-triphosphate reductase large chain; oxidoreductase, allosteric regulation, substrate specificity; 2.45A {Bacteriophage T4} SCOP: c.7.1.3 PDB: 1h79_A* 1h7a_A* 1h78_A 1hk8_A*
Probab=1.00 E-value=1 Score=30.32 Aligned_cols=251 Identities=12% Similarity=0.118 Sum_probs=136.3
Q ss_pred HHHHHHHHHHHHHHCCCEEEEHHHHHHHCCCCCCCCEE--------EECCCCCCCCCCCCCCCEEEEECCCCCCHHCCCC
Q ss_conf 99999999988852873047202365316878888244--------2148852344589996135870445610100027
Q 003561 387 QNLWFEILTSQIETGTPYMLFKDTCNRKSNQQNLGTIK--------SSNLCTEIIEYTSPTETAVCNLASIALPRFVREK 458 (811)
Q Consensus 387 r~l~~~I~~~~~~tG~P~i~f~D~~Nr~~~~~~~g~I~--------~sNlC~EI~~~~~~~e~~~CnL~SInL~~~v~~~ 458 (811)
.+|+...+++.....-|..++.|..-...+.-...... ..|..++-.. .-.+.....+|||++.--..
T Consensus 251 ~dl~~~a~~~~ak~~fpn~~~~d~~~~~~g~~~~~~~MgCR~~l~~~~~~~g~~~~----~g~Gn~gvvTINLpRia~~~ 326 (605)
T 1h7b_A 251 YDIKQLALECASKRMYPDIISAKNNKAITGSSVPVSPMGCRSFLSVWKDSTGNEIL----DGRNNLGVVTLNLPRIALDS 326 (605)
T ss_dssp HHHHHHHHHHHHHHSCCEEEEHHHHHHHHCCSSCCCCBTTTBCCCCCBCTTSCBCC----TTCBEEEEEEEEHHHHHHTT
T ss_pred HHHHHHHHHHHCCCCCCCHHHCCCCCCCCCCCCCEEEECCHHCCHHHHHCCCCCCC----CCCCEEEEEEEEHHHHHHHH
T ss_conf 89999999986773367523103321248864411210221102034422478676----25441210784378899774
Q ss_pred CCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHCCC------CCH--------------HHHHHHHHCCC
Q ss_conf 9887789864224579998667978999999999999999984089------967--------------99999861049
Q 003561 459 DVPVESHPSRIVGSRGSKNRFFDFEKLAEVTAIVTENLNKIIDVNY------YPV--------------ETARRSNLRHR 518 (811)
Q Consensus 459 ~~~~~~~~~~~~~~~~~~~~~fd~~~l~~~v~~avr~LD~vid~~~------~p~--------------~~~~~~~~~~R 518 (811)
+ ..+ .++...| |+.|.+.+.++.+.|..=.+.-. .|. +.+...-+..|
T Consensus 327 ~----------~~a-~gd~~~F-~~~Ld~~l~l~~~~L~~r~~~l~~~~~~~~p~L~~~G~~~~~l~~~d~i~~~~~~~~ 394 (605)
T 1h7b_A 327 Y----------IGT-QFNEQKF-VELFNERMDLCFEALMCRISSLKGVKATVAPILYQEGAFGVRLKPDDDIIELFKNGR 394 (605)
T ss_dssp E----------ETT-EECHHHH-HHHHHHHHHHHHHHHHHHHHHTTTCBGGGCHHHHTSSTTSSCCCTTSBSHHHHTTTT
T ss_pred C----------CCC-CCCHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHCCCCCCCCCCCCCHHHHHCCCC
T ss_conf 1----------011-6879999-999999999999999999999987410478334317401035687640788861688
Q ss_pred -CEEEECCHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCC
Q ss_conf -7032340399999991999999988999999999999999999999999819999998896666877753445699971
Q 003561 519 -PIGIGVQGLADTFILLGMAFESPEAQQLNKDIFETIYYHALKTSSEIAAKEGPYETYHNSPVSKGILQPDMWNVIPSDR 597 (811)
Q Consensus 519 -~iGiGv~Glad~L~~~gi~y~S~ea~~l~~~i~e~i~~~a~~aS~eLAke~G~~~~f~~S~~~~G~l~~d~~~~~~~~~ 597 (811)
.+.||+.||+.++. +. |.+|..+|.++|...+.+.+ +|.|--=..+. +|...
T Consensus 395 ~t~tiG~iGL~E~~~-l~-------a~~f~~~Il~~m~~~~~~~~----~e~g~~~~l~a---------------TPAEs 447 (605)
T 1h7b_A 395 SSVSLGYIGIHELNI-LV-------GRDIGREILTKMNAHLKQWT----ERTGFAFSLYS---------------TPAEN 447 (605)
T ss_dssp SEEEEEEECHHHHHH-HH-------TSCCHHHHHHHHHHHHHHHH----HHHCCEEEEEC---------------CCCTT
T ss_pred CCEEEEHHHHHHHHH-HH-------HHHHHHHHHHHHHHHHHHHH----HHHCCCEEEEE---------------CCCCC
T ss_conf 405542778999999-99-------99999999999999999999----98798026785---------------54453
Q ss_pred CCHHHHHHHHHHCCCCCCCEECCCCCCCCCCCCCCCCCCCCCCCCEEEEECCCCCEEEECHHHHHHHHHCCCCCHHHHHH
Q ss_conf 34899999998428654410125999860000479752223554506788145743784867899999859993887634
Q 003561 598 WDWGVLRDMISKNGVRNSLLVAPMPTASTSQILGNNECFEPYTSNIYSRRVLSGEFVVVNKHLLHDLTEMGIWSPTIKNK 677 (811)
Q Consensus 598 ~dW~~Lr~~i~~~GlRNs~l~AiaPT~s~S~i~g~s~gieP~~s~~y~r~~~~g~~~~vn~~l~~~l~~~g~~~~~~~~~ 677 (811)
.--.-.+.+-+++|. |.|++. .|+|.|.|
T Consensus 448 ~~~Rfa~~D~k~fG~----------------i~g~td--~~YYTNS~--------------------------------- 476 (605)
T 1h7b_A 448 LCYRFCKLDTEKYGS----------------VKDVTD--KGWYTNSF--------------------------------- 476 (605)
T ss_dssp HHHHHHHHHHHHHCC----------------CTTTTS--SSSCCCTT---------------------------------
T ss_pred HHHHHHHHHHHHCCC----------------CCCCCC--CCCCCCCE---------------------------------
T ss_conf 889999999997598----------------679888--88777998---------------------------------
Q ss_pred HHCCCCCCCCCCCCCHHHHHHHHHHCCCCHHHHHHHHHHHCCCCCCCCCEEEEECCC--CHHHHHHHHHHHHHCCCC
Q ss_conf 341699601368996678860100102792989999998355343464005740799--987899999999984995
Q 003561 678 IIYDDGSVQKIPEIPEELKMIYKTVWEIKQMTLVDMAVDRGCYIDQSQSLNIHMDQP--NFKKVTSLHFRTWSRGLK 752 (811)
Q Consensus 678 i~~~~Gsv~~i~~~p~~~k~~f~tA~ei~~~~~i~~~a~~Q~~vDQsiS~nl~~~~~--~~~~i~~~~~~Awk~GlK 752 (811)
+ +| -..++++.+.|+..+..|++..-+...-+++++. +.+.+..+..++.+ |+-
T Consensus 477 ---------h---ip--------V~~~~~~~eki~~e~~~~~~~~GG~i~~v~l~~~~~n~~a~~~lv~~~~~-~i~ 532 (605)
T 1h7b_A 477 ---------H---VS--------VEENITPFEKISREAPYHFIATGGHISYVELPDMKNNLKGLEAVWDYAAQ-HLD 532 (605)
T ss_dssp ---------C---CC--------TTSCCCHHHHHHHHGGGGGTCTTBCCEEEECCCCTTCHHHHHHHHHHHHH-HCS
T ss_pred ---------E---EC--------CCCCCCHHHHHHHHCCCCCCCCCEEEEEEECCCCCCCHHHHHHHHHHHHH-CCC
T ss_conf ---------7---61--------79999989999842532440387159999738987999999999999984-898
No 10
>1h3o_B Transcription initiation factor TFIID 20/15 kDa subunits; transcription/TBP-associated factors, TBP-associated factors; 2.3A {Homo sapiens} SCOP: a.22.1.3
Probab=1.00 E-value=1 Score=14.81 Aligned_cols=32 Identities=6% Similarity=0.179 Sum_probs=25.1
Q ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCC
Q ss_conf 99889999999999999999999999998199
Q 003561 540 SPEAQQLNKDIFETIYYHALKTSSEIAAKEGP 571 (811)
Q Consensus 540 S~ea~~l~~~i~e~i~~~a~~aS~eLAke~G~ 571 (811)
++++.++.-+++...-......|+.|||.|++
T Consensus 25 d~~vee~ll~lADdFV~~V~~~ac~lAKhR~s 56 (76)
T 1h3o_B 25 DEDVEEMLLQIADDFIESVVTAACQLARHRKS 56 (76)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTC
T ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCC
T ss_conf 98999999999999999999999999983599
Done!