Query 003561
Match_columns 811
No_of_seqs 242 out of 1652
Neff 6.7
Searched_HMMs 13730
Date Tue Mar 26 18:04:42 2013
Command hhsearch -i /local_scratch/syshi/lefta3m/003561.a3m -d /local_scratch/syshi/scop70.hhm -v 0 -o /local_scratch/syshi/H1_1610-1613//hhsearch_scop/003561hhsearch_scop
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 d1rlra2 c.7.1.2 (A:222-748) R1 100.0 0 0 1025.9 41.4 493 215-767 1-520 (525)
2 d1peqa2 c.7.1.2 (A:175-699) R1 100.0 0 0 992.7 35.3 487 215-762 1-524 (525)
3 d1l1la_ c.7.1.4 (A:) B12-depen 100.0 0 0 655.2 25.2 535 129-758 10-676 (721)
4 d1rlra1 a.98.1.1 (A:10-221) R1 100.0 0 0 365.2 15.6 203 6-214 1-212 (212)
5 d1peqa1 a.98.1.1 (A:13-174) R1 99.9 1.3E-25 9.2E-30 180.6 9.5 136 72-213 22-160 (162)
6 d1hk8a_ c.7.1.3 (A:) Class III 94.2 0.13 9.7E-06 25.6 14.7 244 387-748 226-504 (561)
7 d1h3ob_ a.22.1.3 (B:) TAF(II)- 11.1 28 0.0021 10.6 5.3 32 540-571 23-54 (74)
8 d1mska_ d.173.1.1 (A:) Methion 8.8 34 0.0025 10.1 3.3 100 520-630 165-281 (327)
9 d2ccqa1 d.314.1.1 (A:11-109) N 4.6 78 0.0057 7.7 0.3 43 481-532 14-56 (99)
10 d2hrva_ b.47.1.4 (A:) 2A cyste 4.4 82 0.006 7.6 1.7 25 748-772 51-75 (139)
No 1
>d1rlra2 c.7.1.2 (A:222-748) R1 subunit of ribonucleotide reductase, C-terminal domain {Escherichia coli [TaxId: 562]}
Probab=100.00 E-value=0 Score=1025.87 Aligned_cols=493 Identities=30% Similarity=0.511 Sum_probs=458.5
Q ss_pred CCCCCCCCCCCCCHHHHHHHHHHHHHHHHHCCCCCEEECEECCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHCCCCCC
Q ss_conf 77632212348988889999999999997529741120012379984358888667742079999999999751897334
Q 003561 215 LSSCFLVCMKDDSIEGIYETLKECAVISKSAGGIGVSVHNIRATGSYIRGTNGTSNGIVPMLRVFNDTARYVDQGGGKRK 294 (811)
Q Consensus 215 lsSCfl~~~~~Ds~~~I~~~~~~~a~isk~ggGvG~~~s~iR~~Gs~I~g~~g~ssG~vp~lk~~~~~~~~v~qgG~~R~ 294 (811)
+|||||+.+ +||++||++++++++.++|.|||||+|+|.|||+|++|+|++|+|||||||||+||.++.+|+||| +||
T Consensus 1 ~ssCfv~~v-~Ds~~~I~~~~~~~~~~~k~ggGvG~~~s~lR~~Gs~i~g~~g~ssG~v~f~k~~d~~~~~i~qgg-~Rr 78 (525)
T d1rlra2 1 FSSCVLIEC-GDSLDSINATSSAIVKYVSQRAGIGINAGRIRALGSPIRGGEAFHTGCIPFYKHFQTAVKSCSQGG-VRG 78 (525)
T ss_dssp CCCCEEEEC-CSSHHHHHHHHHHHHHTTTTTCCEEEECCSSCCCSCCSSSSCCCSCCSHHHHHHHHHHHTTTSSSS-SSS
T ss_pred CCCEECCCC-CCCHHHHHHHHHHHHHHHHCCCEEEEECCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHCCC-CCC
T ss_conf 960430789-999899999999999998647749840366688998247989827876659999999987877289-432
Q ss_pred CCEEEECCCCCCCHHHHHHHHHCCCCCCCCCCCCCEECCCCHHHHHHHHCCCCEEEECCCCCCCCHHHHH---HHHHHHH
Q ss_conf 6317613688633899998111078321011234300124989899997199668766787796122231---5799999
Q 003561 295 GAFAVYLEPWHADIFEFLNLKKNHGKEEHRARDLFYALWVPDLFMERVQTNGQWSLFCPNEASGLADCWG---AEFEKLY 371 (811)
Q Consensus 295 Ga~~vyl~~wH~DI~~fl~~K~~~g~~~~r~~~l~~~v~i~d~Fm~rv~~~~~w~Lf~P~~~~~L~~~~g---~eF~~~Y 371 (811)
||+|+||++|||||++||++|++.|++.+|+++++++|+|||+||++++++++|+||+|.+++.+.+.++ ++++..|
T Consensus 79 gA~~~~l~~~HpDI~~Fi~~K~~~g~~~~~~~~~~~~v~i~d~fm~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~ 158 (525)
T d1rlra2 79 GAATLFYPMWHLEVESLLVLKNNRGVEGNRVRHMDYGVQINKLMYTRLLKGEDITLFSPSDVPGLYDAFFADQEEFERLY 158 (525)
T ss_dssp CCEEEEEETTBTTHHHHTTTTCSSSCGGGCCTTSEEEEEECHHHHHHHHTTCEEEEECTTTSTTHHHHHHHCHHHHHHHH
T ss_pred CCEEEEECCCCCHHHHHHHHCCCCCCHHHHHHHCCCCCCCCHHHHHHHHHCCCCEEEECCCCCCCCCCCHHHHHHHHHHH
T ss_conf 01799975996319999984567674255522025432577478998741766336453556543343114578888775
Q ss_pred HHHHHC-CCEEEEEEHHHHHHHHHHHHHHHCCCEEEEHHHHHHHCCC-CCCCCEEEECCCCCCCCCCCC--------CCC
Q ss_conf 999861-9403898289999999998885287304720236531687-888824421488523445899--------961
Q 003561 372 THYERE-GKAKKVVQAQNLWFEILTSQIETGTPYMLFKDTCNRKSNQ-QNLGTIKSSNLCTEIIEYTSP--------TET 441 (811)
Q Consensus 372 ~~~e~~-~~~~~~v~Ar~l~~~I~~~~~~tG~P~i~f~D~~Nr~~~~-~~~g~I~~sNlC~EI~~~~~~--------~e~ 441 (811)
...+.. ++.+++|+||+||.+|++++++||+||++|+|++|+++|. ++.|+|.+||||+||+||+.+ ++.
T Consensus 159 ~~~~~~~~~~~~~v~Arel~~~i~~~~~etG~P~i~f~d~~N~~~~~~~~~~~I~~sNlC~Ei~l~~~~~~~~~~~~~~~ 238 (525)
T d1rlra2 159 TKYEKDDSIRKQRVKAVELFSLMMQERASTGRIYIQNVDHCNTHSPFDPAIAPVRQSNLCLEIALPTKPLNDVNDENGEI 238 (525)
T ss_dssp HHHHHCTTSCEEEEEHHHHHHHHHHHHHHHSCEEEEEHHHHHHSSSBCTTTSCCCCCCTTSCCCCCCBCCSSTTCTTCBC
T ss_pred HHHHCCCCCCCCHHHHHHHHHHHHHHHHCCCCCCEEEEECCCCCCCCCCCCCEEECCCCCCCCCCCCCCCCCCCCCCCCE
T ss_conf 54431576230249899999999986131476422653121135553445644635774221136787433467776534
Q ss_pred EEEEECCCCCCHHCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHCCCCEE
Q ss_conf 35870445610100027988778986422457999866797899999999999999998408996799999861049703
Q 003561 442 AVCNLASIALPRFVREKDVPVESHPSRIVGSRGSKNRFFDFEKLAEVTAIVTENLNKIIDVNYYPVETARRSNLRHRPIG 521 (811)
Q Consensus 442 ~~CnL~SInL~~~v~~~~~~~~~~~~~~~~~~~~~~~~fd~~~l~~~v~~avr~LD~vid~~~~p~~~~~~~~~~~R~iG 521 (811)
++|||+|+|++++ |||++|+++|+++||+||+|||.+.||+|++++++++.|+||
T Consensus 239 ~~~~l~s~n~~~~-------------------------~d~~~l~~~v~~~vr~LD~vid~~~~p~~~~~~~~~~~R~IG 293 (525)
T d1rlra2 239 ALCTLSAFNLGAI-------------------------NNLDELDELAILAVRALDALLDYQDYPIPAAKRGAMGRRTLG 293 (525)
T ss_dssp EECEEEEEETTSC-------------------------SSGGGHHHHHHHHHHHHHHHHHHSCCSSHHHHHHHHHHCCEE
T ss_pred EEEECCCCCCCCC-------------------------CCHHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHH
T ss_conf 5553234673311-------------------------427887799999999999743011465047888988887640
Q ss_pred EECCHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCC------C
Q ss_conf 2340399999991999999988999999999999999999999999819999998896666877753445699------9
Q 003561 522 IGVQGLADTFILLGMAFESPEAQQLNKDIFETIYYHALKTSSEIAAKEGPYETYHNSPVSKGILQPDMWNVIP------S 595 (811)
Q Consensus 522 iGv~Glad~L~~~gi~y~S~ea~~l~~~i~e~i~~~a~~aS~eLAke~G~~~~f~~S~~~~G~l~~d~~~~~~------~ 595 (811)
||+|||||+|+++||+|+|+||++++++|||+|+++|++||++||+|+|+||.|++|+|++|++++|.+.... .
T Consensus 294 LGvmGlad~L~~lgi~Y~S~ea~~~~~~i~e~i~~~a~~aS~eLAke~G~~p~f~~s~~~~g~~~~~~~~~~~~~~~~~~ 373 (525)
T d1rlra2 294 IGVINFAYYLAKHGKRYSDGSANNLTHKTFEAIQYYLLKASNELAKEQGACPWFNETTYAKGILPIDTYKKDLDTIANEP 373 (525)
T ss_dssp EEEECHHHHHHHTTCCSSSSTTHHHHHHHHHHHHHHHHHHHHHHHHHHCCCTTGGGBGGGGTCCHHHHSCGGGGGTCCCC
T ss_pred CCCHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCHHHHHCCCCCCCCCCCCCCCCCCCC
T ss_conf 43000889999878876078877668999999999999999999985398874321244325542333212332223442
Q ss_pred CCCCHHHHHHHHHHCCCCCCCEECCCCCCCCCCCCCCCCCCCCCCCCEEEEECCCCCEEEECHHHHHHHHHCCCCCHHHH
Q ss_conf 71348999999984286544101259998600004797522235545067881457437848678999998599938876
Q 003561 596 DRWDWGVLRDMISKNGVRNSLLVAPMPTASTSQILGNNECFEPYTSNIYSRRVLSGEFVVVNKHLLHDLTEMGIWSPTIK 675 (811)
Q Consensus 596 ~~~dW~~Lr~~i~~~GlRNs~l~AiaPT~s~S~i~g~s~gieP~~s~~y~r~~~~g~~~~vn~~l~~~l~~~g~~~~~~~ 675 (811)
..++|++||++|++||+|||+++|+|||+|+|+|+|+|+||||+|+++|.|++..|.+..+++
T Consensus 374 ~~~~w~~lr~~i~~~G~RNs~~~aiaPT~s~s~i~~~s~gieP~~~~~~~r~~~~g~~~~~~~----------------- 436 (525)
T d1rlra2 374 LHYDWEALRESIKTHGLRNSTLSALMPSETSSQISNATNGIEPPRGYVSIKASKDGILRQVVP----------------- 436 (525)
T ss_dssp CCSCHHHHHHHHHHHCCSCSCCBCBCCCSHHHHHTTCCCTTCCCSCSEEEEEETTEEEEEECT-----------------
T ss_pred CCCCHHHHHHHHHHHCEECCHHHHHHCCCCHHHHCCCCCCCCCCCCEEEEEEECCCEEEEECC-----------------
T ss_conf 225889999999973855521221103355666505677556342128999936840576368-----------------
Q ss_pred HHHHCCCCCCCCCCCCCHHHHHHHHHHCCC-CHHHHHHHHHHHCCCCCCCCCEEEEECC-------CCHHHHHHHHHHHH
Q ss_conf 343416996013689966788601001027-9298999999835534346400574079-------99878999999999
Q 003561 676 NKIIYDDGSVQKIPEIPEELKMIYKTVWEI-KQMTLVDMAVDRGCYIDQSQSLNIHMDQ-------PNFKKVTSLHFRTW 747 (811)
Q Consensus 676 ~~i~~~~Gsv~~i~~~p~~~k~~f~tA~ei-~~~~~i~~~a~~Q~~vDQsiS~nl~~~~-------~~~~~i~~~~~~Aw 747 (811)
.+++++++|+||||| ++.++|+|+|++|||||||||+|+|+++ .+.++|..+|++||
T Consensus 437 ---------------~~~~l~~~~~ta~ei~~~~~~v~~~A~~Q~~iDqsiS~tln~~~~~~~~~~~~~~~v~~~~~~Aw 501 (525)
T d1rlra2 437 ---------------DYEHLHDAYELLWEMPGNDGYLQLVGIMQKFIDQSISANTNYDPSRFPSGKVPMQQLLKDLLTAY 501 (525)
T ss_dssp ---------------THHHHTTTCCCGGGSSCSHHHHHHHHHHHTTCSSCBCCCEEECGGGSGGGCCCHHHHHHHHHHHH
T ss_pred ---------------CHHHHHHHHHHHHHHCCCHHHHHHHHHHHHCCCHHHHCCCCCCCCCCCCCCCCHHHHHHHHHHHH
T ss_conf ---------------84999999999998059469999999874406499819447784225788888999999999999
Q ss_pred HCCCCEEEEEECCCCCCCCC
Q ss_conf 84995489984475322221
Q 003561 748 SRGLKTGMYYLRSRAAADAI 767 (811)
Q Consensus 748 k~GlKt~~YY~r~~~~~~~~ 767 (811)
|+|||| +||+||+++.+..
T Consensus 502 k~GlKT-~Yy~~Sr~~~~~~ 520 (525)
T d1rlra2 502 KFGVKT-LYYQNTRDDIDDL 520 (525)
T ss_dssp HTTCCE-ECCEEECCCHHHH
T ss_pred HHCCCC-CCCCCCHHHHHHH
T ss_conf 828882-0769371331014
No 2
>d1peqa2 c.7.1.2 (A:175-699) R1 subunit of ribonucleotide reductase, C-terminal domain {Salmonella typhimurium [TaxId: 90371]}
Probab=100.00 E-value=0 Score=992.70 Aligned_cols=487 Identities=27% Similarity=0.477 Sum_probs=445.0
Q ss_pred CCCCCCCCCCCCCHHHHHHHHHHHHHHHHHCCCCCEEECEECCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHCCCCCC
Q ss_conf 77632212348988889999999999997529741120012379984358888667742079999999999751897334
Q 003561 215 LSSCFLVCMKDDSIEGIYETLKECAVISKSAGGIGVSVHNIRATGSYIRGTNGTSNGIVPMLRVFNDTARYVDQGGGKRK 294 (811)
Q Consensus 215 lsSCfl~~~~~Ds~~~I~~~~~~~a~isk~ggGvG~~~s~iR~~Gs~I~g~~g~ssG~vp~lk~~~~~~~~v~qgG~~R~ 294 (811)
|+||||+.+ +||++||+++++++++++|.|||||+|||.|||+|++|+|++|+|||||||||+||+++.+|+||| +||
T Consensus 1 L~sCfv~~v-~Ds~~~I~~~~~~~a~~~k~ggGiG~~~s~lR~~G~~i~~~~g~ssG~v~f~~~~d~~~~~v~qgg-~Rr 78 (525)
T d1peqa2 1 LVSCFLLRI-EDNMESIGRAVNSALQLSKRGGGVAFLLSNLREAGAPIKRIENQSSGVIPVMKMLEDAFSYANQLG-ARQ 78 (525)
T ss_dssp SCCCEEECC-CSSHHHHHHHHHHHHHHHTTTCEEEEECTTSCCTTCCBTTBSSCCCCSHHHHHHHHHHHHHC-------C
T ss_pred CCEEECCCC-CCCHHHHHHHHHHHHHHHHCCCEEEEECCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHCCC-CCC
T ss_conf 953655788-989899999999999998637848740467688998147889815872019999999999975289-650
Q ss_pred CCEEEECCCCCCCHHHHHHHHHCCCCCCCCCCCCCEECCCCHHHHHHHHCCCCEEEECCCCCCCCHHHHHHH--HHHHHH
Q ss_conf 631761368863389999811107832101123430012498989999719966876678779612223157--999999
Q 003561 295 GAFAVYLEPWHADIFEFLNLKKNHGKEEHRARDLFYALWVPDLFMERVQTNGQWSLFCPNEASGLADCWGAE--FEKLYT 372 (811)
Q Consensus 295 Ga~~vyl~~wH~DI~~fl~~K~~~g~~~~r~~~l~~~v~i~d~Fm~rv~~~~~w~Lf~P~~~~~L~~~~g~e--F~~~Y~ 372 (811)
||.|+||++|||||++||++|++.|++.+|++++++++++||+||++|++++.|+||+|++++.+.+.+..+ +++.|.
T Consensus 79 ga~~~~l~~~HpDI~~Fi~~K~~~~~~~~~~~~~~~~~~i~d~Fm~~v~~~~~~~l~~~~~~~~~~~~~~~~~~~~e~~~ 158 (525)
T d1peqa2 79 GAGAVYLHAHHPDILRFLDTKRENADEKIRIKTLSLGVVIPDITFRLAKENAQMALFSPYDIQRRYGKPFGDIAISERYD 158 (525)
T ss_dssp CEEEEEEETTSTTHHHHHGGGC--------CCSCEEEEECCSHHHHHHHTTCEEEEECHHHHHHHHSSCGGGSCHHHHHH
T ss_pred CCEEEEECCCCCCHHHHHHHCCCCCCCCCCEEEECCHHHHHHHHHHHHHHCCCCCEECCCCCCCCCCCCCCCHHHHHHHH
T ss_conf 41799975986309999972756887552002204201135788998763244200000011000376423204789999
Q ss_pred HHHH-CCCEEEEEEHHHHHHHHHHHHHHHCCCEEEEHHHHHHHCCCCCCCCEEEECCCCCCCCCCCCC------------
Q ss_conf 9986-194038982899999999988852873047202365316878888244214885234458999------------
Q 003561 373 HYER-EGKAKKVVQAQNLWFEILTSQIETGTPYMLFKDTCNRKSNQQNLGTIKSSNLCTEIIEYTSPT------------ 439 (811)
Q Consensus 373 ~~e~-~~~~~~~v~Ar~l~~~I~~~~~~tG~P~i~f~D~~Nr~~~~~~~g~I~~sNlC~EI~~~~~~~------------ 439 (811)
+++. .++.+++|+||+||.+|++++|+||+||++|+|++|+++|+ .|.|++||||+||.+++.++
T Consensus 159 ~~~~~~~~~~~~v~Ar~l~~~i~~~~~~tg~Pgi~f~D~iN~~~~~--~~~i~~sNlc~EI~~~n~~~~~~~~~~~~~l~ 236 (525)
T d1peqa2 159 ELIADPHVRKTYINARDFFQTLAEIQFESGYPYIMFEDTVNRANPI--AGRINMSNLCSEILQVNSASRYDDNLDYTHIG 236 (525)
T ss_dssp HHHHCTTSCEEEEEHHHHHHHHHHHHHHHSCCEEECHHHHHHHCCS--SSCCCCCCTTSCCCCCCCCCEECTTSCEEECC
T ss_pred HHHHCCCEEEEEEHHHHHHHHHHHHHHHHCCCCCCCHHHHCCCCCC--CCEEECCCCCCCCCCCCCHHCCCCCCCCCCCC
T ss_conf 9974388213442077999999998744043302110122034456--63374244434530247711036654433455
Q ss_pred CCEEEEECCCCCCHHCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHCCC-CCHHHHHHHHHCCC
Q ss_conf 61358704456101000279887789864224579998667978999999999999999984089-96799999861049
Q 003561 440 ETAVCNLASIALPRFVREKDVPVESHPSRIVGSRGSKNRFFDFEKLAEVTAIVTENLNKIIDVNY-YPVETARRSNLRHR 518 (811)
Q Consensus 440 e~~~CnL~SInL~~~v~~~~~~~~~~~~~~~~~~~~~~~~fd~~~l~~~v~~avr~LD~vid~~~-~p~~~~~~~~~~~R 518 (811)
+.++|||+|+||.+|+. ++.++++++.++|+||+|||.+. +|++++++.++++|
T Consensus 237 ~~~~CnL~sinl~~~~d-------------------------~~~~~~~~~~a~r~Ld~vid~~~~~p~~~~~~~~~~~R 291 (525)
T d1peqa2 237 HDISCNLGSLNIAHVMD-------------------------SPDIGRTVETAIRGLTAVSDMSHIRSVPSIAAGNAASH 291 (525)
T ss_dssp CCEECEEEEEEHHHHHT-------------------------CSCHHHHHHHHHHHHHHHHHTCCCTTCHHHHHHHHHHC
T ss_pred CCCEEECCCCCCCCCCC-------------------------CCCCCCEEEEHHHHHHHHHHHCCCCCHHHHHHHHHHHH
T ss_conf 43124335546443212-------------------------34555146641234667654003473999999999852
Q ss_pred CEEEECCHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC-CCCCCCCCCCCCCCCCCCC----C---
Q ss_conf 7032340399999991999999988999999999999999999999999819-9999988966668777534----4---
Q 003561 519 PIGIGVQGLADTFILLGMAFESPEAQQLNKDIFETIYYHALKTSSEIAAKEG-PYETYHNSPVSKGILQPDM----W--- 590 (811)
Q Consensus 519 ~iGiGv~Glad~L~~~gi~y~S~ea~~l~~~i~e~i~~~a~~aS~eLAke~G-~~~~f~~S~~~~G~l~~d~----~--- 590 (811)
+||||+||||++|+++|++|+|+||++++++|||+|+++|++||++||+|+| +||.|++|+|++|.++.+. |
T Consensus 292 ~iGlGv~Gla~~L~~lgi~Y~S~ea~~~~~~i~~~i~~~a~~aS~eLAkerG~~f~~f~~s~~~~g~~~~~~~~~~~~~~ 371 (525)
T d1peqa2 292 AIGLGQMNLHGYLAREGIAYGSPEALDFTNLYFYTITWHAVHTSMRLARERGKTFAGFAQSRYASGDYFTQYLQDDWQPK 371 (525)
T ss_dssp CEEEEEECHHHHHHHTTCCTTSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCCCTTGGGSHHHHSHHHHHHHSSCCSCS
T ss_pred HHCCCCCHHHHHHHHCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCHHHCCCHHHHHHHHHCCCC
T ss_conf 32267541778998759860001001125899999999999999999985198775456585554863654355421454
Q ss_pred -----------CCCCCCCCCHHHHHHHHHHCCCCCCCEECCCCCCCCCCCCCCCCCCCCCCCCEEEEEC-CCCCEEEECH
Q ss_conf -----------5699971348999999984286544101259998600004797522235545067881-4574378486
Q 003561 591 -----------NVIPSDRWDWGVLRDMISKNGVRNSLLVAPMPTASTSQILGNNECFEPYTSNIYSRRV-LSGEFVVVNK 658 (811)
Q Consensus 591 -----------~~~~~~~~dW~~Lr~~i~~~GlRNs~l~AiaPT~s~S~i~g~s~gieP~~s~~y~r~~-~~g~~~~vn~ 658 (811)
...++...+|++||+++++||+|||+++++|||+|+|++.|+|+||||+|+++|.|+. ..|+++.++
T Consensus 372 ~~~~~~~~~~~~~~~~~~~~w~~l~~~i~~~G~rNs~l~aiaPt~s~s~~~~~t~gieP~~~~~~~r~~~~~g~~~~~~- 450 (525)
T d1peqa2 372 TAKVRALFARSGITLPTREMWLKLRDDVMRYGIYNQNLQAVPPTGSISYINHATSSIHPIVAKIEIRKEGKTGRVYYPA- 450 (525)
T ss_dssp SHHHHHHHHHHTCCCCCHHHHHHHHHHHHHHCCSCSCCBCBCCCCTHHHHHTCCSSSSCCSCSEEEECCSTTSCEEEEC-
T ss_pred CCCHHHHCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCHHHCCCCCCCCCHHHHEEEEECCCCEEEEEC-
T ss_conf 4201221134578741388899999998765310112200000155301205545406553231368826775699658-
Q ss_pred HHHHHHHHCCCCCHHHHHHHHCCCCCCCCCCCCCHHHHHHHHHHCCCCHHHHHHHHHHHCCCCCCCCCEEEEECC-CCHH
Q ss_conf 789999985999388763434169960136899667886010010279298999999835534346400574079-9987
Q 003561 659 HLLHDLTEMGIWSPTIKNKIIYDDGSVQKIPEIPEELKMIYKTVWEIKQMTLVDMAVDRGCYIDQSQSLNIHMDQ-PNFK 737 (811)
Q Consensus 659 ~l~~~l~~~g~~~~~~~~~i~~~~Gsv~~i~~~p~~~k~~f~tA~ei~~~~~i~~~a~~Q~~vDQsiS~nl~~~~-~~~~ 737 (811)
|.+|+++|++|+||+||+|+++|+|||++|||||||||+|||+|+ .+.+
T Consensus 451 ------------------------------~~l~~~~k~vf~ta~ei~~~~~v~~~a~~Q~~iDqsiS~tin~p~~~~~~ 500 (525)
T d1peqa2 451 ------------------------------PFMTNENLDMYQDAYDIGPEKIIDTYAEATRHVDQGLSLTLFFPDTATTR 500 (525)
T ss_dssp ------------------------------TTCCTTSGGGCCCHHHHCHHHHHHHHHHHHTTCSSCBCCCEEECTTCCHH
T ss_pred ------------------------------CCCCHHHHHHCCCCCCCCHHHHHHHHHHHHCCCCHHHCCCCCCCCCCCHH
T ss_conf ------------------------------87888798164783109999999999997050167553650208989999
Q ss_pred HHHHHHHHHHHCCCCEEEEEECCCC
Q ss_conf 8999999999849954899844753
Q 003561 738 KVTSLHFRTWSRGLKTGMYYLRSRA 762 (811)
Q Consensus 738 ~i~~~~~~Awk~GlKt~~YY~r~~~ 762 (811)
+|..+|++|||+|||| +||||+++
T Consensus 501 dv~~~~~~awk~GlKt-lYY~r~~~ 524 (525)
T d1peqa2 501 DINKAQIYAWRKGIKS-LYYIRLRQ 524 (525)
T ss_dssp HHHHHHHHHHHHTCCE-ECCEEECC
T ss_pred HHHHHHHHHHHCCCCC-EEECCCCC
T ss_conf 9999999999729770-23262021
No 3
>d1l1la_ c.7.1.4 (A:) B12-dependent (class II) ribonucleotide reductase {Lactobacillus leichmannii [TaxId: 28039]}
Probab=100.00 E-value=0 Score=655.25 Aligned_cols=535 Identities=17% Similarity=0.154 Sum_probs=412.5
Q ss_pred HHHHHHHCCCCCCCCCHHHHHHHHHHHCCC--CCCCCCCCHHHHHHHHHHHHCC--------CC-------HHHHHHHHH
Q ss_conf 999776201246899805699999862363--4992148989999999967304--------89-------899999999
Q 003561 129 ACLDSEIIYDRDFDYDYFGFKTLERSYLLK--VQGKVVERPQHMLMRVSIGIHK--------DD-------IDSAIKTYH 191 (811)
Q Consensus 129 ~~l~~~i~~~rd~~~~y~g~~~l~~~Yllk--~~g~~~E~pq~~~~rvA~~l~~--------~~-------~~~~~~~y~ 191 (811)
+++...+.|. ++-+|-.+++++|... ..|+ -|++.++.-||.-+... .. .+.++++|+
T Consensus 10 ~~~~~~~~p~----~~~l~~~v~~rtYaR~~~e~~~-rEtW~etv~R~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~~ 84 (721)
T d1l1la_ 10 DRVKASVKPH----WGKLGWVTYKRTYARWLPEKGR-SENWDETVKRVVEGNINLDPRLQDSPSLELKQSLTEEAERLYK 84 (721)
T ss_dssp HHHHHHCCCC----CCTTHHHHHHTTTCCEETTTTE-ECCHHHHHHHHHHHHHTTCGGGGSCCCHHHHHHHHHHHHHHHH
T ss_pred HHHHCCCCCC----CCCCCEEEEEEEECCCCCCCCC-CCCHHHHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHH
T ss_conf 9762157999----7876206998840453787888-0678999999975267663776540244422356999999999
Q ss_pred HHHCCCEECCCCCCCCCCCC----C-CCCCCCCCCCC-------------------------------------------
Q ss_conf 97539086166100146888----8-88776322123-------------------------------------------
Q 003561 192 MMSQRWFTHASPTLFNAGTP----R-PQLSSCFLVCM------------------------------------------- 223 (811)
Q Consensus 192 ~ls~~~~~~atP~l~naGt~----~-~~lsSCfl~~~------------------------------------------- 223 (811)
+|.+++++|++|+|+++||+ + ..+.||+.+.+
T Consensus 85 ~~~~~k~lPsgR~L~~aGt~~~~~~~~~~~NC~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~~~~~~lm~G~GvGf~v 164 (721)
T d1l1la_ 85 LIYGLGATPSGRNLWISGTDYQRRTGDSLNNCWFVAIRPQKYGDSKIVPSYLGKQEKAVSMPFSFLFDELMKGGGVGFSV 164 (721)
T ss_dssp HHHTTSEEECHHHHHHTTSHHHHTSTTTTCCEEEEECSCEECCSCSCCCTTSCSSCEETTHHHHHHHHHHHTTCEEEEEC
T ss_pred HHHCCCCCCCHHHHHHCCCHHHHCCCCCCCCEEEEECCCCCCCCHHHHHHHCCCCCCCCCCCHHHHHHHHCCCCCCCEEC
T ss_conf 99678168973678876873554377612432676315211232122100001234455544799999856689751435
Q ss_pred ----------------------------------------------------CCCCHHHHHHHHHHHHHHH------HHC
Q ss_conf ----------------------------------------------------4898888999999999999------752
Q 003561 224 ----------------------------------------------------KDDSIEGIYETLKECAVIS------KSA 245 (811)
Q Consensus 224 ----------------------------------------------------~~Ds~~~I~~~~~~~a~is------k~g 245 (811)
++||++||.++++.+.... +.|
T Consensus 165 ~~~~i~~lp~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~V~DSrEGW~~a~~~ll~~~~~~~~~~~g 244 (721)
T d1l1la_ 165 ARSNISQIPRVDFAIDLQLVVDETSESYDASVKVGAVGKNELVQDADSIYYRLPDTREGWVLANALLIDLHFAQTNPDRK 244 (721)
T ss_dssp CHHHHTTSCCCCCCCEEEEECCTTSTTHHHHHHTTCBCTTTCCCCTTCEEEECCSSHHHHHHHHHHHHHTTSGGGCTTCC
T ss_pred CCCCCCCCCCCCCCCCCCEECCCCCCCCCCCCCCCCCCCCCCCCCCCCEEEECCCCHHHHHHHHHHHHHHHHCCCCCCCC
T ss_conf 76751348987666653100134555566431002333321124666304661767889999999999986325555567
Q ss_pred CCCCEEECEECCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHCCCCCCCCEEEECCCCCCCHHHHHHHHHCCCCCCCCC
Q ss_conf 97411200123799843588886677420799999999997518973346317613688633899998111078321011
Q 003561 246 GGIGVSVHNIRATGSYIRGTNGTSNGIVPMLRVFNDTARYVDQGGGKRKGAFAVYLEPWHADIFEFLNLKKNHGKEEHRA 325 (811)
Q Consensus 246 gGvG~~~s~iR~~Gs~I~g~~g~ssG~vp~lk~~~~~~~~v~qgG~~R~Ga~~vyl~~wH~DI~~fl~~K~~~g~~~~r~ 325 (811)
+|+++|+|.|||+|++|+|++|+||||+||+++|+.++..++|+|++|.+ .++|+||.+++..+...|.. +|
T Consensus 245 ~~v~~DfS~IRP~Gs~Ikg~gG~ASGpvp~~~l~d~~~~~i~~~~grrl~------~~~~~di~~~i~~~v~~g~v-rr- 316 (721)
T d1l1la_ 245 QKLILDLSDIRPYGAEIHGFGGTASGPMPLISMLLDVNEVLNNKAGGRLT------AVDAADICNLIGKAVVAGNV-RR- 316 (721)
T ss_dssp CEEEEECTTSCCTTCBCTTSSSBCCCSHHHHHHHHHHHHHHHTTTTSCCC------HHHHHHHHHHHHHHHHTTC-----
T ss_pred CCEEEEEECCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHCCCCCCCC------CHHHHHHHHHHHHHHHCCCH-HH-
T ss_conf 72389865367788855566776754267999987666772314786533------10121254353554202102-21-
Q ss_pred CCCCEECCCCHHHHHHHHCCCCEEEECCCCCCCCHHHHHHHHHHHHHHHHHCCCEEEEEEHHHHHHHHHHHHHHHCCCEE
Q ss_conf 23430012498989999719966876678779612223157999999998619403898289999999998885287304
Q 003561 326 RDLFYALWVPDLFMERVQTNGQWSLFCPNEASGLADCWGAEFEKLYTHYEREGKAKKVVQAQNLWFEILTSQIETGTPYM 405 (811)
Q Consensus 326 ~~l~~~v~i~d~Fm~rv~~~~~w~Lf~P~~~~~L~~~~g~eF~~~Y~~~e~~~~~~~~v~Ar~l~~~I~~~~~~tG~P~i 405 (811)
..++++..+|.++.+..+++.|.+..+... .+...+.++|+++|.+|++.+|++|+||+
T Consensus 317 -sa~i~~~~~dd~~~~~~k~~~~~~~~~~~~--------------------~~n~~~~~~a~el~~~i~~~~~~sGEPGi 375 (721)
T d1l1la_ 317 -SAELALGSNDDQDFISMKQDQEKLMHHRWA--------------------SNNSVAVDSAFSGYQPIAAGIRENGEPGI 375 (721)
T ss_dssp --CEEEEEETTCHHHHHGGGCHHHHHHTGGG--------------------EEEEEEECTTCCCHHHHHHHHHHHSCCEE
T ss_pred -HHCCCCCCCCHHHHHHHHCCCCCCCHHCCC--------------------CCCCCCCCCCCHHHHHHHHHHHHHCCHHH
T ss_conf -201000473189999874021000100013--------------------56742210010138999999986363456
Q ss_pred EEHHHHHHHC------CCCCCCCEEEECCCCCCCCCCCCCCCEEEEECCCCCCHHCCCCCCCCCCCCCCCCCCCCCCCCC
Q ss_conf 7202365316------8788882442148852344589996135870445610100027988778986422457999866
Q 003561 406 LFKDTCNRKS------NQQNLGTIKSSNLCTEIIEYTSPTETAVCNLASIALPRFVREKDVPVESHPSRIVGSRGSKNRF 479 (811)
Q Consensus 406 ~f~D~~Nr~~------~~~~~g~I~~sNlC~EI~~~~~~~e~~~CnL~SInL~~~v~~~~~~~~~~~~~~~~~~~~~~~~ 479 (811)
+|+|++|+.+ +..+.|.|.+||||+||+|+. ..+|||+||||.+++.+.
T Consensus 376 ~f~d~a~~~~~~n~~~~~~~~~~i~~tNPCgEi~L~~----~~~CNL~sInL~~~~~~~--------------------- 430 (721)
T d1l1la_ 376 VNLDLSKNYGRIVDGYQAGIDGDVEGTNPCGEISLAN----GEPCNLFEVFPLIAEEQG--------------------- 430 (721)
T ss_dssp EEHHHHHHCSSGGGCCCTTTTTTEEEECTTCCSEEET----TCBCCEEEECHHHHHHTT---------------------
T ss_pred HHHHHHHHHHHHCCCCCCCCCCCEEECCCHHHCCCCC----CCCCEEHHCCCHHHCCHH---------------------
T ss_conf 5678898751311357777667433105344304456----663101010200110117---------------------
Q ss_pred CCHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHCCCCEEEECCHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHH
Q ss_conf 79789999999999999999840899679999986104970323403999999919999999889999999999999999
Q 003561 480 FDFEKLAEVTAIVTENLNKIIDVNYYPVETARRSNLRHRPIGIGVQGLADTFILLGMAFESPEAQQLNKDIFETIYYHAL 559 (811)
Q Consensus 480 fd~~~l~~~v~~avr~LD~vid~~~~p~~~~~~~~~~~R~iGiGv~Glad~L~~~gi~y~S~ea~~l~~~i~e~i~~~a~ 559 (811)
+.+.+++++++++++++++ +.||++++++.++++|+||||+|||||+|++++++|.+.++.+.. ...+.
T Consensus 431 ---~~~~~~~~~a~~~~~~v~~-~~~~~~~~~~~~~~~R~iGlGv~GlaD~l~~~~~~~~~~~~~~~~-------~~~~~ 499 (721)
T d1l1la_ 431 ---WDLQEVFALAARYAKRVTF-SPYDWEISREIIQKNRRIGISMSGIQDWLLTRLGNRVVTGFKDDF-------DPETH 499 (721)
T ss_dssp ---CCHHHHHHHHHHHHHHHTT-SCCSCHHHHHHHHHHCCCEEEECSHHHHHHHHHSSCSEEEEEEEE-------CTTTC
T ss_pred ---HHHHHHHHHHHHHHHHHHC-CCCCHHHHHHHHHHHHHHCCCCCCHHHHHHHCCCHHHHHHHHHHH-------HHHHH
T ss_conf ---8888999999999876430-111237889987750231157431757998735817789999999-------99999
Q ss_pred HHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHCCCCCC-CEECCCCCCCCCCCCCCCCCCCC
Q ss_conf 99999999819999998896666877753445699971348999999984286544-10125999860000479752223
Q 003561 560 KTSSEIAAKEGPYETYHNSPVSKGILQPDMWNVIPSDRWDWGVLRDMISKNGVRNS-LLVAPMPTASTSQILGNNECFEP 638 (811)
Q Consensus 560 ~aS~eLAke~G~~~~f~~S~~~~G~l~~d~~~~~~~~~~dW~~Lr~~i~~~GlRNs-~l~AiaPT~s~S~i~g~s~gieP 638 (811)
++|..+|.+++.++++++ + ....|+..++.++++|+|++ ++|+||||||+|+|+|+|+||||
T Consensus 500 e~~~~~~~~~~~~~~l~~------------~-----~~~~~~~~~~~~~~~Gi~r~~~~ttiaPTGTiS~i~g~SsGIeP 562 (721)
T d1l1la_ 500 EAIKVPVYDKRAIKMVDQ------------L-----YKAVVKADQDYSKTLGCNESIKHTTVKPSGTVAKLAGASEGMHF 562 (721)
T ss_dssp CEEEEEEECHHHHHHHHH------------H-----HHHHHHHHHHHHHHHTCCCCSCCEEBCCCHHHHHHHTCCCTTCC
T ss_pred HHHHHHHHCCCHHHHHHH------------H-----HHHCHHHHHHHHHHHCCCCCCCEEEECCCCCEEEECCCCCCCCC
T ss_conf 972444524106789998------------8-----53357889999998589863424666688861567774566685
Q ss_pred CCCCEEEEECCCCCEEEECHHHHHHHHHCCCCCHHHHHHHHCCCCCCCCCC-CCCHHHHHHHHHHCCCCHHHHHHHHHHH
Q ss_conf 554506788145743784867899999859993887634341699601368-9966788601001027929899999983
Q 003561 639 YTSNIYSRRVLSGEFVVVNKHLLHDLTEMGIWSPTIKNKIIYDDGSVQKIP-EIPEELKMIYKTVWEIKQMTLVDMAVDR 717 (811)
Q Consensus 639 ~~s~~y~r~~~~g~~~~vn~~l~~~l~~~g~~~~~~~~~i~~~~Gsv~~i~-~~p~~~k~~f~tA~ei~~~~~i~~~a~~ 717 (811)
+||++|+|+++.++ |.++.+.|++.|++.++. ....++.+...| .+|+..+..|+||.||++.+||+|+|++
T Consensus 563 ~~a~~y~R~v~~~~----~dpl~~~l~~~g~~~e~~---~~~~~~~vv~~p~~~~~~~~~~f~ta~di~~~~hl~~~a~~ 635 (721)
T d1l1la_ 563 HYGAYLIQRIRFQD----SDPLLPALKACGYRTEAD---IYTENTTCVEFPIKAVGADNPNFASAGTVSIAEQFATQAFL 635 (721)
T ss_dssp BSCSEEEEEEEEET----TCTHHHHHHHTTCEEEEC---SSSTTEEEEEEEEECTTTTCTTCCBTTTSCHHHHHHHHHHH
T ss_pred CCCCEEEEEEECCC----CCHHHHHHHHHCCCCHHH---HCCCCCCEEECCCCCCCCCCCCEEECCCCCHHHHHHHHHHH
T ss_conf 52430478750477----776899999828962677---52588735734445763113462576869999999999995
Q ss_pred CC-CCCCCCCEEEEECCCCHHHHHHHHHHHHHCCCCEEEEEE
Q ss_conf 55-343464005740799987899999999984995489984
Q 003561 718 GC-YIDQSQSLNIHMDQPNFKKVTSLHFRTWSRGLKTGMYYL 758 (811)
Q Consensus 718 Q~-~vDQsiS~nl~~~~~~~~~i~~~~~~Awk~GlKt~~YY~ 758 (811)
|+ ||||+||+|+++++...+++.. |++||+.|||+++.+.
T Consensus 636 Q~~wvd~~iSkTin~p~~e~~~v~~-yl~~~~~g~kGitvl~ 676 (721)
T d1l1la_ 636 QTYWSDNAVSCTITFQDSEGDQVES-LLRQYRFITKSTSLLP 676 (721)
T ss_dssp HHHTCSSCBCCEEEECGGGGGGHHH-HHHHTTTTCSEEEEEE
T ss_pred CCCCCCCCCEEEEEECCCHHHHHHH-HHHHHHCCCCEEEEEE
T ss_conf 2132256374689878854999999-9998755881799972
No 4
>d1rlra1 a.98.1.1 (A:10-221) R1 subunit of ribonucleotide reductase, N-terminal domain {Escherichia coli [TaxId: 562]}
Probab=100.00 E-value=0 Score=365.23 Aligned_cols=203 Identities=26% Similarity=0.407 Sum_probs=180.7
Q ss_pred CCCCEEECCHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHCC-CCCCHHHHHHHHHHH
Q ss_conf 3993521386799999999880399998797879999981108999988999999999986322-899839999999999
Q 003561 6 RDGRQEAVHFDKITARLKKLSYGLSTEHCDPVLVSQKVCAGVYKGVTTSQLDELAAETAAAMTT-NHPDYASLAARIAVS 84 (811)
Q Consensus 6 rdG~~e~~~~~ki~~~i~~~~~~l~~~~v~~~~i~~~~~~~~~d~itt~ei~~~li~~a~~~~~-~~p~y~~lA~Rl~~~ 84 (811)
|||++|+|+++||+++|+|+|+||+. |+++.|+.++..+++|||||+||+++++++|+++++ +||||+.|||||+++
T Consensus 1 RdG~~E~~~~dKI~~ri~~~~~gl~~--v~~~~i~~~v~~~lydgitt~eid~~~~~~a~~~it~~hPdY~~lAaRi~l~ 78 (212)
T d1rlra1 1 RDGSTERINLDKIHRVLDWAAEGLHN--VSISQVELRSHIQFYDGIKTSDIHETIIKAAADLISRDAPDYQYLAARLAIF 78 (212)
T ss_dssp CCSTTSCSCTHHHHHHHHHHHTTCSS--CCHHHHHHHHHTTCCTTCCHHHHHHHHHHHHHTTCCSSSTTHHHHHHHHHHH
T ss_pred CCCCEEEECHHHHHHHHHHHHCCCCC--CCHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHH
T ss_conf 99967664699999999999668988--9989999999973457865999999999975534050228899999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCHHH-HHHHHHCHHHHHHHHCCCCCCCCCHHHHHHHHHHHCCC--CCC
Q ss_conf 887884121259999999761210287655767479-99999619999776201246899805699999862363--499
Q 003561 85 NLHKNTKKSFSETIKDMYNHYNERSGLKAPLIADDI-YEIIMKNAACLDSEIIYDRDFDYDYFGFKTLERSYLLK--VQG 161 (811)
Q Consensus 85 ~l~k~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~-~~~~~~~~~~l~~~i~~~rd~~~~y~g~~~l~~~Yllk--~~g 161 (811)
++||++.++|++.. ++.++. .++..+.+.+.+ ..++.++.++|+++|+|+||+.|+|+|+++|+++||+| .+|
T Consensus 79 ~l~K~~~~~f~~~~--~~~~~~--~~~~~g~~~~~~l~~~~~~~~~~l~~~I~~~rD~~f~YfG~kTL~~~YLlk~~~~g 154 (212)
T d1rlra1 79 HLRKKAYGQFEPPA--LYDHVV--KMVEMGKYDNHLLEDYTEEEFKQMDTFIDHDRDMTFSYAAVKQLEGKYLVQNRVTG 154 (212)
T ss_dssp HHHHHHHSSSSCCC--HHHHHH--HHHHTTSSCTHHHHHSCHHHHHHHHTTCCGGGGGGCCHHHHHHHHHHTSCBCSSTT
T ss_pred HHHHHCCCCCCCCH--HHHHHH--HHHHCCCCCHHHHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHCCCCCCCC
T ss_conf 99874248777724--787777--66651553256578989999999986576636542278999999986423466788
Q ss_pred CCCCCHHHHHHHHHHHHCCC-----CHHHHHHHHHHHHCCCEECCCCCCCCCCCCCCC
Q ss_conf 21489899999999673048-----989999999997539086166100146888888
Q 003561 162 KVVERPQHMLMRVSIGIHKD-----DIDSAIKTYHMMSQRWFTHASPTLFNAGTPRPQ 214 (811)
Q Consensus 162 ~~~E~pq~~~~rvA~~l~~~-----~~~~~~~~y~~ls~~~~~~atP~l~naGt~~~~ 214 (811)
+++|+||+|||||||+|+++ ++++|++||++||+++|++|||||+|+||+++|
T Consensus 155 ~i~E~PQ~~~MRVAmgl~~~e~~~~~~~~a~~~Y~~lS~~~~t~aTPtl~nagtp~~Q 212 (212)
T d1rlra1 155 EIYESAQFLYILVAACLFSNYPRETRLQYVKRFYDAVSTFKISLPTPIMSGVRTPTRQ 212 (212)
T ss_dssp CBCCCHHHHHHHHHHHHHTTSCTTTHHHHHHHHHHHHHTTSEECCHHHHHHTTSSCCC
T ss_pred EECCCHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCC
T ss_conf 0677508999999999860475244899999999997289867898611399998998
No 5
>d1peqa1 a.98.1.1 (A:13-174) R1 subunit of ribonucleotide reductase, N-terminal domain {Salmonella typhimurium [TaxId: 90371]}
Probab=99.92 E-value=1.3e-25 Score=180.57 Aligned_cols=136 Identities=15% Similarity=0.108 Sum_probs=110.4
Q ss_pred CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCHHHHH-HHHHCHHHHHHHHCCCCCCCCCHHHHHH
Q ss_conf 983999999999988788412125999999976121028765576747999-9996199997762012468998056999
Q 003561 72 PDYASLAARIAVSNLHKNTKKSFSETIKDMYNHYNERSGLKAPLIADDIYE-IIMKNAACLDSEIIYDRDFDYDYFGFKT 150 (811)
Q Consensus 72 p~y~~lA~Rl~~~~l~k~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~-~~~~~~~~l~~~i~~~rd~~~~y~g~~~ 150 (811)
-+.+..|+|.++....+.....|......+.. .+..+++++.+++ |+.+++++|++.|++.||..|+|+|+++
T Consensus 22 ~~kD~~A~~~y~~e~v~~~~~~F~sl~eri~~------LV~~g~Yd~~il~~Ys~eeie~L~~~I~~~rd~~~ty~G~~~ 95 (162)
T d1peqa1 22 FDKDQQAIDAFFATHVRPHSVTFASQHERLGT------LVREGYYDDAVLARYDRAFVLRLFEHAHASGFRFQTFLGAWK 95 (162)
T ss_dssp THHHHHHHHHHHHHTHHHHBCCCSCHHHHHHH------HHHTTSBCHHHHTTSCHHHHHHHHHHHHHSCCCCSSHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHH------HHHCCCCCHHHHHHCCHHHHHHHHHHHHHCCCCCCCHHHHHH
T ss_conf 48899999999999973414565569999998------763472119999871699999999886215655403689999
Q ss_pred HHHHHCCCC-C-CCCCCCHHHHHHHHHHHHCCCCHHHHHHHHHHHHCCCEECCCCCCCCCCCCCC
Q ss_conf 998623634-9-92148989999999967304898999999999753908616610014688888
Q 003561 151 LERSYLLKV-Q-GKVVERPQHMLMRVSIGIHKDDIDSAIKTYHMMSQRWFTHASPTLFNAGTPRP 213 (811)
Q Consensus 151 l~~~Yllk~-~-g~~~E~pq~~~~rvA~~l~~~~~~~~~~~y~~ls~~~~~~atP~l~naGt~~~ 213 (811)
|+++||+|. + +.++|+||++|||||++|+.++.+.|+++|+.||+++|+||||||+|||++++
T Consensus 96 l~~~YllK~~d~~~~~E~pq~~~m~vAl~l~~~~~~~a~~~y~~~~~~~~~~aTPT~~NaG~~~r 160 (162)
T d1peqa1 96 FYTSYTLKTFDGKRYLEHFEDRVTMVALTLAQGDETLATQLTDEMLSGRFQPATPTFLNCGKQQR 160 (162)
T ss_dssp HHHHTSCBCTTSSSBCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTSEEECHHHHHHTTBSSC
T ss_pred HHHHHHHCCCCCCCHHHCHHHHHHHHHHHHCCCCHHHHHHHHHHHHHCCEECCCCHHHHCCCCCC
T ss_conf 99977510089873551799999999999715729999999999990981278937551889889
No 6
>d1hk8a_ c.7.1.3 (A:) Class III anaerobic ribonucleotide reductase NRDD subunit {Bacteriophage T4 [TaxId: 10665]}
Probab=94.18 E-value=0.13 Score=25.63 Aligned_cols=244 Identities=11% Similarity=0.127 Sum_probs=124.6
Q ss_pred HHHHHHHHHHHHHHCCCEEEEHHHHHHHCCCCCCCCEEEECCCCCCCCCCC------CCCCEEEE--ECCCCCCHHCCCC
Q ss_conf 999999999888528730472023653168788882442148852344589------99613587--0445610100027
Q 003561 387 QNLWFEILTSQIETGTPYMLFKDTCNRKSNQQNLGTIKSSNLCTEIIEYTS------PTETAVCN--LASIALPRFVREK 458 (811)
Q Consensus 387 r~l~~~I~~~~~~tG~P~i~f~D~~Nr~~~~~~~g~I~~sNlC~EI~~~~~------~~e~~~Cn--L~SInL~~~v~~~ 458 (811)
-++++..+++..+.|.||.++-+........ + ....-.|+...+-.. ..-.+..| ..+|||++.--..
T Consensus 226 ~dl~~~~~~~~ak~~~p~f~n~~~~~~~~~~---~-~~~~~m~cR~~l~~~~~~~g~~~~~g~gsigvVTINLPRla~~a 301 (561)
T d1hk8a_ 226 YDIKQLALECASKRMYPDIISAKNNKAITGS---S-VPVSPMGCRSFLSVWKDSTGNEILDGRNNLGVVTLNLPRIALDS 301 (561)
T ss_dssp HHHHHHHHHHHHHHCCCEEEEHHHHHHHHTC---S-SCCCCBTTTBCCCCCBCTTSCBCCTTCBEEEEEEEEHHHHHHTT
T ss_pred HHHHHHHHHHHHHHCCCCHHHHCCCHHHCCC---C-CCCCCCCCHHHHHHHHCCCCCCCCCCCCCEEEEEEEHHHHHHHH
T ss_conf 1789999999988658314420022011378---8-64346762655201202578774312231247996558889874
Q ss_pred CCCCCCCCCCCCCCCCCCCCCCC----HHHHHHHHHHHHHHHHHH---H------------HCCCCCH-----HHHHHHH
Q ss_conf 98877898642245799986679----789999999999999999---8------------4089967-----9999986
Q 003561 459 DVPVESHPSRIVGSRGSKNRFFD----FEKLAEVTAIVTENLNKI---I------------DVNYYPV-----ETARRSN 514 (811)
Q Consensus 459 ~~~~~~~~~~~~~~~~~~~~~fd----~~~l~~~v~~avr~LD~v---i------------d~~~~p~-----~~~~~~~ 514 (811)
......| |+.|.+...++.+.|..= + ..+.+|. .......
T Consensus 302 ----------------~~~~~~d~~~F~~~L~~~m~la~~~L~~r~~~l~~~~~~~~p~l~~~g~~~~~~~~~~~~~~~~ 365 (561)
T d1hk8a_ 302 ----------------YIGTQFNEQKFVELFNERMDLCFEALMCRISSLKGVKATVAPILYQEGAFGVRLKPDDDIIELF 365 (561)
T ss_dssp ----------------EETTEECHHHHHHHHHHHHHHHHHHHHHHHHHTTTCBGGGCHHHHTSSTTSSCCCTTSBTHHHH
T ss_pred ----------------HCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCHHHHHCCCCCCCCCCCCCHHHHH
T ss_conf ----------------0133457999999999999999999999999998655312457674776654367663267774
Q ss_pred H-CCCCEEEECCHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCC
Q ss_conf 1-049703234039999999199999998899999999999999999999999981999999889666687775344569
Q 003561 515 L-RHRPIGIGVQGLADTFILLGMAFESPEAQQLNKDIFETIYYHALKTSSEIAAKEGPYETYHNSPVSKGILQPDMWNVI 593 (811)
Q Consensus 515 ~-~~R~iGiGv~Glad~L~~~gi~y~S~ea~~l~~~i~e~i~~~a~~aS~eLAke~G~~~~f~~S~~~~G~l~~d~~~~~ 593 (811)
. ..-.+++|+.|++.+-... +.+|..+|.++|...+.+. .+|.|--=..+.+|
T Consensus 366 ~~~~~t~~~G~iGl~E~~~~~--------g~~fa~~il~~m~~~~~~~----~~etG~~~nleaTP-------------- 419 (561)
T d1hk8a_ 366 KNGRSSVSLGYIGIHELNILV--------GRDIGREILTKMNAHLKQW----TERTGFAFSLYSTP-------------- 419 (561)
T ss_dssp TTTTSEEEEEEECHHHHHHHH--------TSCCHHHHHHHHHHHHHHH----HHHHSCEEEEEECC--------------
T ss_pred CCCEEEEEECCCCHHHHHHHH--------HHHHHHHHHHHHHHHHHHH----HHHHCCCEEEEECC--------------
T ss_conf 065013210304577877899--------9999999999999999999----99879913688403--------------
Q ss_pred CCCCCCHHHHHHHHHHCCCCCCCEECCCCCCCCCCCCCCCCCCCCCCCCEEEEECCCCCEEEECHHHHHHHHHCCCCCHH
Q ss_conf 99713489999999842865441012599986000047975222355450678814574378486789999985999388
Q 003561 594 PSDRWDWGVLRDMISKNGVRNSLLVAPMPTASTSQILGNNECFEPYTSNIYSRRVLSGEFVVVNKHLLHDLTEMGIWSPT 673 (811)
Q Consensus 594 ~~~~~dW~~Lr~~i~~~GlRNs~l~AiaPT~s~S~i~g~s~gieP~~s~~y~r~~~~g~~~~vn~~l~~~l~~~g~~~~~ 673 (811)
....--.-.+.|-++||- |.|++. .|.|.|.+
T Consensus 420 -AEsts~RfAk~D~~~y~~----------------i~~~~d--~~yYTNS~----------------------------- 451 (561)
T d1hk8a_ 420 -AENLCYRFCKLDTEKYGS----------------VKDVTD--KGWYTNSF----------------------------- 451 (561)
T ss_dssp -CTTHHHHHHHHHHHHHCC----------------CTTTTT--TSCCCCTT-----------------------------
T ss_pred -CHHHHHHHHHHHHHHCCC----------------CCCCCC--CCCCCCCC-----------------------------
T ss_conf -314669999999986787----------------678787--87667866-----------------------------
Q ss_pred HHHHHHCCCCCCCCCCCCCHHHHHHHHHHCCCCHHHHHHHHHHHCCCCCCCCCEEEEECC--CCHHHHHHHHHHHHH
Q ss_conf 763434169960136899667886010010279298999999835534346400574079--998789999999998
Q 003561 674 IKNKIIYDDGSVQKIPEIPEELKMIYKTVWEIKQMTLVDMAVDRGCYIDQSQSLNIHMDQ--PNFKKVTSLHFRTWS 748 (811)
Q Consensus 674 ~~~~i~~~~Gsv~~i~~~p~~~k~~f~tA~ei~~~~~i~~~a~~Q~~vDQsiS~nl~~~~--~~~~~i~~~~~~Awk 748 (811)
+ +| -..++++.+.|+.++..|++..-+--.-+++.+ ++.+.+..+-.++.+
T Consensus 452 -------------h---lP--------v~~~~d~~eki~~e~~~~~~~tGG~I~hv~l~e~~~n~~a~~~lv~~~~~ 504 (561)
T d1hk8a_ 452 -------------H---VS--------VEENITPFEKISREAPYHFIATGGHISYVELPDMKNNLKGLEAVWDYAAQ 504 (561)
T ss_dssp -------------C---CC--------TTSCCCHHHHHHHHHHHHTTCTTBCCEEEECCCCTTCHHHHHHHHHHHHH
T ss_pred -------------C---CC--------CCCCCCHHHHHHHHCCCCCCCCCEEEEEEECCCCCCCHHHHHHHHHHHHH
T ss_conf -------------0---78--------89999989999741333330276489998778876899999999999986
No 7
>d1h3ob_ a.22.1.3 (B:) TAF(II)-20, (TAF(II)-15, hTAF12), histone fold domain {Human (Homo sapiens) [TaxId: 9606]}
Probab=11.08 E-value=28 Score=10.60 Aligned_cols=32 Identities=6% Similarity=0.179 Sum_probs=25.7
Q ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCC
Q ss_conf 99889999999999999999999999998199
Q 003561 540 SPEAQQLNKDIFETIYYHALKTSSEIAAKEGP 571 (811)
Q Consensus 540 S~ea~~l~~~i~e~i~~~a~~aS~eLAke~G~ 571 (811)
++++.++.-+++...-......+++|||.||+
T Consensus 23 d~~vee~ll~iADdFV~~V~~~ac~lAKhR~s 54 (74)
T d1h3ob_ 23 DEDVEEMLLQIADDFIESVVTAACQLARHRKS 54 (74)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTC
T ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCC
T ss_conf 97899999999999999999999999983799
No 8
>d1mska_ d.173.1.1 (A:) Methionine synthase SAM-binding domain {Escherichia coli [TaxId: 562]}
Probab=8.85 E-value=34 Score=10.07 Aligned_cols=100 Identities=22% Similarity=0.266 Sum_probs=50.7
Q ss_pred EEEECCHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-C--CC----------CCCCCCCCCCCCCC
Q ss_conf 03234039999999199999998899999999999999999999999981-9--99----------99988966668777
Q 003561 520 IGIGVQGLADTFILLGMAFESPEAQQLNKDIFETIYYHALKTSSEIAAKE-G--PY----------ETYHNSPVSKGILQ 586 (811)
Q Consensus 520 iGiGv~Glad~L~~~gi~y~S~ea~~l~~~i~e~i~~~a~~aS~eLAke~-G--~~----------~~f~~S~~~~G~l~ 586 (811)
.|.|+--++.-|...+=.|.+-....|.++++|.++.+.++- +=++. | +- ..|.|.+++-|
T Consensus 165 aG~~~~~~~~~~~~~~Ddy~~i~~kaLadrlAEA~AE~~H~~---vR~~~wgy~~~e~l~~~~l~~e~Y~GiRpa~G--- 238 (327)
T d1mska_ 165 GGLEEDALADAFEAQHDDYNKIMVKALADRLAEAFAEYLHER---VRKVYWGYAPNENLSNEELIRENYQGIRPAPG--- 238 (327)
T ss_dssp SCTTHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHHHHHH---HHHTTSCSCTTCCCCHHHHHTTCSSCBCCCTT---
T ss_pred CCCCHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHCCCCCCCCCCHHHHHHCCCEECCCCCC---
T ss_conf 273089999999972672999999998999989999999887---77874368877788978974226432488899---
Q ss_pred CCCCCCCCCC---CCCHHHHHHHHHH-CCCCCCCEECCCCCCCCCCCC
Q ss_conf 5344569997---1348999999984-286544101259998600004
Q 003561 587 PDMWNVIPSD---RWDWGVLRDMISK-NGVRNSLLVAPMPTASTSQIL 630 (811)
Q Consensus 587 ~d~~~~~~~~---~~dW~~Lr~~i~~-~GlRNs~l~AiaPT~s~S~i~ 630 (811)
|...|+- ..-|+-|.. .+ .|+.=+--.++.|++|+|=+.
T Consensus 239 ---YPAcPDh~ek~~l~~LL~~--e~~iGi~LTEs~~m~P~~Svsg~~ 281 (327)
T d1mska_ 239 ---YPACPEHTEKATIWELLEV--EKHTGMKLTESFAMWPGASVSGWY 281 (327)
T ss_dssp ---STTSCCGGGHHHHHHHTTH--HHHHCCEECTTCCEESSSEEEEEE
T ss_pred ---CCCCHHHHHHHHHHHHHCH--HHCCCCEECHHHCCCCCCEEEEEE
T ss_conf ---8753427888999986062--330561676310627635045898
No 9
>d2ccqa1 d.314.1.1 (A:11-109) N-glycanase 1, N-terminal domain {Human (Homo sapiens) [TaxId: 9606]}
Probab=4.59 E-value=78 Score=7.74 Aligned_cols=43 Identities=16% Similarity=0.278 Sum_probs=29.0
Q ss_pred CHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHCCCCEEEECCHHHHHHH
Q ss_conf 9789999999999999999840899679999986104970323403999999
Q 003561 481 DFEKLAEVTAIVTENLNKIIDVNYYPVETARRSNLRHRPIGIGVQGLADTFI 532 (811)
Q Consensus 481 d~~~l~~~v~~avr~LD~vid~~~~p~~~~~~~~~~~R~iGiGv~Glad~L~ 532 (811)
+-+.+.+++.+..+.++|+++.-. ..++|+|=.+=--++..+.
T Consensus 14 ~~~~~~~~l~~L~ki~~NIl~~P~---------e~KyR~Ir~sN~~f~~~v~ 56 (99)
T d2ccqa1 14 TPETFLEASKLLLTYADNILRNPN---------DEKYRSIRIGNTAFSTRLL 56 (99)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHCTT---------CGGGGEEETTCHHHHHHTT
T ss_pred CHHHHHHHHHHHHHHHHHHHCCCC---------CCCEEEEECCCHHHHHHHC
T ss_conf 889999999999999999970999---------7530255558889999871
No 10
>d2hrva_ b.47.1.4 (A:) 2A cysteine proteinase {Human rhinovirus 2 [TaxId: 12130]}
Probab=4.42 E-value=82 Score=7.61 Aligned_cols=25 Identities=20% Similarity=0.224 Sum_probs=19.8
Q ss_pred HCCCCEEEEEECCCCCCCCCCCCCC
Q ss_conf 8499548998447532222112323
Q 003561 748 SRGLKTGMYYLRSRAAADAIKFTVD 772 (811)
Q Consensus 748 k~GlKt~~YY~r~~~~~~~~~~~~~ 772 (811)
+.-|.+++|||+++..--...|+-.
T Consensus 51 rC~CttGvYYc~s~~k~YPV~~~~p 75 (139)
T d2hrva_ 51 SCDCTQATYYCKHKNRYFPITVTSH 75 (139)
T ss_dssp CCCCCEEEEEEGGGTEEEEEECEEE
T ss_pred CCCCCCCEEEEEECCCCCCEEECCC
T ss_conf 6657777588622785824698389
Done!