RPS-BLAST 2.2.26 [Sep-21-2011]
Database: pdb70
27,921 sequences; 6,701,793 total letters
Searching..................................................done
Query= 003561
(811 letters)
>3hnc_A Ribonucleoside-diphosphate reductase large subuni; oxidoreductase,
ribonucleotide reductase, allosteric enzyme, binding,
DNA replication; HET: TTP; 2.41A {Homo sapiens} PDB:
3hnd_A* 3hne_A* 3hnf_A*
Length = 792
Score = 1261 bits (3264), Expect = 0.0
Identities = 538/811 (66%), Positives = 650/811 (80%), Gaps = 19/811 (2%)
Query: 1 MYVVKRDGRQEAVHFDKITARLKKLSYGLSTEHCDPVLVSQKVCAGVYKGVTTSQLDELA 60
M+V+KRDGRQE V FDKIT+R++KL YGL+ + DP ++ KV G+Y GVTT +LD LA
Sbjct: 1 MHVIKRDGRQERVMFDKITSRIQKLCYGLNMDFVDPAQITMKVIQGLYSGVTTVELDTLA 60
Query: 61 AETAAAMTTNHPDYASLAARIAVSNLHKNTKKSFSETIKDMYNHYNERSGLKAPLIADDI 120
AETAA +TT HPDYA LAARIAVSNLHK TKK FS+ ++D+YN+ N +G +P++A
Sbjct: 61 AETAATLTTKHPDYAILAARIAVSNLHKETKKVFSDVMEDLYNYINPHNGKHSPMVAKST 120
Query: 121 YEIIMKNAACLDSEIIYDRDFDYDYFGFKTLERSYLLKVQGKVVERPQHMLMRVSIGIHK 180
+I++ N L+S IIYDRDF Y+YFGFKTLERSYLLK+ GKV ERPQHMLMRVS+GIHK
Sbjct: 121 LDIVLANKDRLNSAIIYDRDFSYNYFGFKTLERSYLLKINGKVAERPQHMLMRVSVGIHK 180
Query: 181 DDIDSAIKTYHMMSQRWFTHASPTLFNAGTPRPQLSSCFLVCMKDDSIEGIYETLKECAV 240
+DID+AI+TY+++S+RWFTHASPTLFNAGT RPQLSSCFL+ MKDDSIEGIY+TLK+CA+
Sbjct: 181 EDIDAAIETYNLLSERWFTHASPTLFNAGTNRPQLSSCFLLSMKDDSIEGIYDTLKQCAL 240
Query: 241 ISKSAGGIGVSVHNIRATGSYIRGTNGTSNGIVPMLRVFNDTARYVDQGGGKRKGAFAVY 300
ISKSAGGIGV+V IRATGSYI GTNG SNG+VPMLRV+N+TARYVDQGG KR GAFA+Y
Sbjct: 241 ISKSAGGIGVAVSCIRATGSYIAGTNGNSNGLVPMLRVYNNTARYVDQGGNKRPGAFAIY 300
Query: 301 LEPWHADIFEFLNLKKNHGKEEHRARDLFYALWVPDLFMERVQTNGQWSLFCPNEASGLA 360
LEPWH DIFEFL+LKKN GKEE RARDLF+ALW+PDLFM+RV+TN WSL CPNE GL
Sbjct: 301 LEPWHLDIFEFLDLKKNTGKEEQRARDLFFALWIPDLFMKRVETNQDWSLMCPNECPGLD 360
Query: 361 DCWGAEFEKLYTHYEREGKAKKVVQAQNLWFEILTSQIETGTPYMLFKDTCNRKSNQQNL 420
+ WG EFEKLY YE++G+ +KVV+AQ LW+ I+ SQ ETGTPYML+KD+CNRKSNQQNL
Sbjct: 361 EVWGEEFEKLYASYEKQGRVRKVVKAQQLWYAIIESQTETGTPYMLYKDSCNRKSNQQNL 420
Query: 421 GTIKSSNLCTEIIEYTSPTETAVCNLASIALPRFVREKDVPVESHPSRIVGSRGSKNRFF 480
GTIK SNLCTEI+EYTS E AVCNLAS+AL +V + +
Sbjct: 421 GTIKCSNLCTEIVEYTSKDEVAVCNLASLALNMYV-------------------TSEHTY 461
Query: 481 DFEKLAEVTAIVTENLNKIIDVNYYPVETARRSNLRHRPIGIGVQGLADTFILLGMAFES 540
DF+KLAEVT +V NLNKIID+NYYPV A SN RHRPIGIGVQGLAD FIL+ FES
Sbjct: 462 DFKKLAEVTKVVVRNLNKIIDINYYPVPEACLSNKRHRPIGIGVQGLADAFILMRYPFES 521
Query: 541 PEAQQLNKDIFETIYYHALKTSSEIAAKEGPYETYHNSPVSKGILQPDMWNVIPSDRWDW 600
EAQ LNK IFETIYY AL+ S ++A ++GPYETY SPVSKGILQ DMWNV P+D WDW
Sbjct: 522 AEAQLLNKQIFETIYYGALEASCDLAKEQGPYETYEGSPVSKGILQYDMWNVTPTDLWDW 581
Query: 601 GVLRDMISKNGVRNSLLVAPMPTASTSQILGNNECFEPYTSNIYSRRVLSGEFVVVNKHL 660
VL++ I+K G+RNSLL+APMPTAST+QILGNNE EPYTSNIY+RRVLSGEF +VN HL
Sbjct: 582 KVLKEKIAKYGIRNSLLIAPMPTASTAQILGNNESIEPYTSNIYTRRVLSGEFQIVNPHL 641
Query: 661 LHDLTEMGIWSPTIKNKIIYDDGSVQKIPEIPEELKMIYKTVWEIKQMTLVDMAVDRGCY 720
L DLTE G+W +KN+II +GS+Q IPEIP++LK +YKTVWEI Q T++ MA +RG +
Sbjct: 642 LKDLTERGLWHEEMKNQIIACNGSIQSIPEIPDDLKQLYKTVWEISQKTVLKMAAERGAF 701
Query: 721 IDQSQSLNIHMDQPNFKKVTSLHFRTWSRGLKTGMYYLRSRAAADAIKFTVDTSVFKEKP 780
IDQSQSLNIH+ +PN+ K+TS+HF W +GLKTGMYYLR+R AA+ I+FT++ K+K
Sbjct: 702 IDQSQSLNIHIAEPNYGKLTSMHFYGWKQGLKTGMYYLRTRPAANPIQFTLNKEKLKDKE 761
Query: 781 EKPELVVDDETKMAQVVCSLTNREECMACGS 811
+ + + E A +VCSL NR+EC+ CGS
Sbjct: 762 KVSKEEEEKERNTAAMVCSLENRDECLMCGS 792
>3k8t_A Ribonucleoside-diphosphate reductase large chain; eukaryotic
ribonucleotide reductase, nucleotide analogs, all enzyme
ATP-binding; HET: DGT 2A5; 2.10A {Saccharomyces
cerevisiae} PDB: 1zyz_A 2cvs_A 2cvt_A* 2cvu_A* 2cvv_A*
1zzd_A* 2cvw_A* 2cvy_A* 2eud_A* 2zlf_A 2zlg_A* 2cvx_A*
3paw_A 3s87_A* 3s8b_A* 3s8c_A* 3s8a_A* 3tb9_A* 3tba_A*
Length = 888
Score = 1229 bits (3180), Expect = 0.0
Identities = 491/805 (60%), Positives = 627/805 (77%), Gaps = 16/805 (1%)
Query: 1 MYVVKRDGRQEAVHFDKITARLKKLSYGLSTEHCDPVLVSQKVCAGVYKGVTTSQLDELA 60
MYV KRDGR+E V FDKITAR+ +L YGL +H D V V+Q++ +GVY+GVTT +LD LA
Sbjct: 1 MYVYKRDGRKEPVQFDKITARISRLCYGLDPKHIDAVKVTQRIISGVYEGVTTIELDNLA 60
Query: 61 AETAAAMTTNHPDYASLAARIAVSNLHKNTKKSFSETIKDMYNHYNERSGLKAPLIADDI 120
AET A MTT HPDYA+LAARIA+SNLHK T K FS+ ++D+Y + N +G AP+I+DD+
Sbjct: 61 AETCAYMTTVHPDYATLAARIAISNLHKQTTKQFSKVVEDLYRYVNAATGKPAPMISDDV 120
Query: 121 YEIIMKNAACLDSEIIYDRDFDYDYFGFKTLERSYLLKVQGKVVERPQHMLMRVSIGIHK 180
Y I+M+N L+S I+YDRDF Y YFGFKTLERSYLL++ G+V ERPQH++MRV++GIH
Sbjct: 121 YNIVMENKDKLNSAIVYDRDFQYSYFGFKTLERSYLLRINGQVAERPQHLIMRVALGIHG 180
Query: 181 DDIDSAIKTYHMMSQRWFTHASPTLFNAGTPRPQLSSCFLVCMKDDSIEGIYETLKECAV 240
DI++A++TY++MS ++FTHASPTLFNAGTP+PQ+SSCFLV MK+DSIEGIY+TLKECA+
Sbjct: 181 RDIEAALETYNLMSLKYFTHASPTLFNAGTPKPQMSSCFLVAMKEDSIEGIYDTLKECAL 240
Query: 241 ISKSAGGIGVSVHNIRATGSYIRGTNGTSNGIVPMLRVFNDTARYVDQGGGKRKGAFAVY 300
ISK+AGGIG+ +HNIR+TGSYI GTNGTSNG++PM+RVFN+TARYVDQGG KR GAFA+Y
Sbjct: 241 ISKTAGGIGLHIHNIRSTGSYIAGTNGTSNGLIPMIRVFNNTARYVDQGGNKRPGAFALY 300
Query: 301 LEPWHADIFEFLNLKKNHGKEEHRARDLFYALWVPDLFMERVQTNGQWSLFCPNEASGLA 360
LEPWHADIF+F++++KNHGKEE RARDLF ALW+PDLFM+RV+ NG W+LF P A GL+
Sbjct: 301 LEPWHADIFDFIDIRKNHGKEEIRARDLFPALWIPDLFMKRVEENGTWTLFSPTSAPGLS 360
Query: 361 DCWGAEFEKLYTHYEREGKAKKVVQAQNLWFEILTSQIETGTPYMLFKDTCNRKSNQQNL 420
DC+G EFE LYT YE+EG+ K ++AQ LW+ IL +Q ETGTP++++KD CNRKSNQ+NL
Sbjct: 361 DCYGDEFEALYTRYEKEGRGKT-IKAQKLWYSILEAQTETGTPFVVYKDACNRKSNQKNL 419
Query: 421 GTIKSSNLCTEIIEYTSPTETAVCNLASIALPRFVREKDVPVESHPSRIVGSRGSKNRFF 480
G IKSSNLC EI+EY++P ETAVCNLAS+ALP F+ S K +
Sbjct: 420 GVIKSSNLCCEIVEYSAPDETAVCNLASVALPAFIET--------------SEDGKTSTY 465
Query: 481 DFEKLAEVTAIVTENLNKIIDVNYYPVETARRSNLRHRPIGIGVQGLADTFILLGMAFES 540
+F+KL E+ +VT NLN++ID NYYPVE AR+SN+RHRPI +GVQGLADTF+LL + F+S
Sbjct: 466 NFKKLHEIAKVVTRNLNRVIDRNYYPVEEARKSNMRHRPIALGVQGLADTFMLLRLPFDS 525
Query: 541 PEAQQLNKDIFETIYYHALKTSSEIAAKEGPYETYHNSPVSKGILQPDMWNVIPSDRWDW 600
EA+ LN IFETIY+ +++ S E+A K+GPYET+ SP S+GILQ DMW+ P WDW
Sbjct: 526 EEARLLNIQIFETIYHASMEASCELAQKDGPYETFQGSPASQGILQFDMWDQKPYGMWDW 585
Query: 601 GVLRDMISKNGVRNSLLVAPMPTASTSQILGNNECFEPYTSNIYSRRVLSGEFVVVNKHL 660
LR I K+GVRNSL +APMPTASTSQILG NECFEP TSN+YSRRVLSGEF VVN +L
Sbjct: 586 DTLRKDIMKHGVRNSLTMAPMPTASTSQILGYNECFEPVTSNMYSRRVLSGEFQVVNPYL 645
Query: 661 LHDLTEMGIWSPTIKNKIIYDDGSVQKIPEIPEELKMIYKTVWEIKQMTLVDMAVDRGCY 720
L DL ++GIW +K +I +GS+Q +P +P+ELK +YKTVWEI Q T+++MA DR Y
Sbjct: 646 LRDLVDLGIWDEGMKQYLITQNGSIQGLPNVPQELKDLYKTVWEISQKTIINMAADRSVY 705
Query: 721 IDQSQSLNIHMDQPNFKKVTSLHFRTWSRGLKTGMYYLRSRAAADAIKFTVDTSVFKEKP 780
IDQS SLN+ + P K+TS+HF W +GLKTGMYYLR++AA+ AI+FT+D + +
Sbjct: 706 IDQSHSLNLFLRAPTMGKLTSMHFYGWKKGLKTGMYYLRTQAASAAIQFTIDQKIADQAT 765
Query: 781 EK-PELVVDDETKMAQVVCSLTNRE 804
E ++ S +
Sbjct: 766 ENVADISNLKRPSYMPSSASYAASD 790
Score = 30.7 bits (69), Expect = 2.2
Identities = 12/62 (19%), Positives = 22/62 (35%), Gaps = 3/62 (4%)
Query: 751 LKTGMYYLRSRAAADAIKFTVDTSVFKEKPEKPELVVDDETKM---AQVVCSLTNREECM 807
L GM L + + + + +EK + E + + C++ N E C
Sbjct: 825 LTKGMAELNVQESKVEVPEVPAPTKNEEKAAPIVDDEETEFDIYNSKVIACAIDNPEACE 884
Query: 808 AC 809
C
Sbjct: 885 MC 886
>2wgh_A Ribonucleoside-diphosphate reductase large subunit; DNA
replication, allosteric enzyme, nucleotide-binding,
cytoplasm, ATP-binding, polymorphism; HET: DTP; 2.30A
{Homo sapiens}
Length = 676
Score = 1124 bits (2908), Expect = 0.0
Identities = 473/691 (68%), Positives = 561/691 (81%), Gaps = 19/691 (2%)
Query: 74 YASLAARIAVSNLHKNTKKSFSETIKDMYNHYNERSGLKAPLIADDIYEIIMKNAACLDS 133
A LAARIAVSNLHK TKK FS+ ++D+YN+ N +G +P++A +I++ N L+S
Sbjct: 1 MAILAARIAVSNLHKETKKVFSDVMEDLYNYINPHNGKHSPMVAKSTLDIVLANKDRLNS 60
Query: 134 EIIYDRDFDYDYFGFKTLERSYLLKVQGKVVERPQHMLMRVSIGIHKDDIDSAIKTYHMM 193
IIYDRDF Y+YFGFKTLERSYLLK+ GKV ERPQHMLMRVS+GIHK+DID+AI+TY+++
Sbjct: 61 AIIYDRDFSYNYFGFKTLERSYLLKINGKVAERPQHMLMRVSVGIHKEDIDAAIETYNLL 120
Query: 194 SQRWFTHASPTLFNAGTPRPQLSSCFLVCMKDDSIEGIYETLKECAVISKSAGGIGVSVH 253
S+RWFTHASPTLFNAGT RPQLSSCFL+ MKDDSIEGIY+TLK+CA+ISKSAGGIGV+V
Sbjct: 121 SERWFTHASPTLFNAGTNRPQLSSCFLLSMKDDSIEGIYDTLKQCALISKSAGGIGVAVS 180
Query: 254 NIRATGSYIRGTNGTSNGIVPMLRVFNDTARYVDQGGGKRKGAFAVYLEPWHADIFEFLN 313
IRATGSYI GTNG SNG+VPMLRV+N+TARYVDQGG KR GAFA+YLEPWH DIFEFL+
Sbjct: 181 CIRATGSYIAGTNGNSNGLVPMLRVYNNTARYVDQGGNKRPGAFAIYLEPWHLDIFEFLD 240
Query: 314 LKKNHGKEEHRARDLFYALWVPDLFMERVQTNGQWSLFCPNEASGLADCWGAEFEKLYTH 373
LKKN GKEE RARDLF+ALW+PDLFM+RV+TN WSL CPNE GL + WG EFEKLY
Sbjct: 241 LKKNTGKEEQRARDLFFALWIPDLFMKRVETNQDWSLMCPNECPGLDEVWGEEFEKLYAS 300
Query: 374 YEREGKAKKVVQAQNLWFEILTSQIETGTPYMLFKDTCNRKSNQQNLGTIKSSNLCTEII 433
YE++G+ +KVV+AQ LW+ I+ SQ ETGTPYML+KD+CNRKSNQQNLGTIK SNLCTEI+
Sbjct: 301 YEKQGRVRKVVKAQQLWYAIIESQTETGTPYMLYKDSCNRKSNQQNLGTIKCSNLCTEIV 360
Query: 434 EYTSPTETAVCNLASIALPRFVREKDVPVESHPSRIVGSRGSKNRFFDFEKLAEVTAIVT 493
EYTS E AVCNLAS+AL +V +DF+KLAEVT +V
Sbjct: 361 EYTSKDEVAVCNLASLALNMYVTS-------------------EHTYDFKKLAEVTKVVV 401
Query: 494 ENLNKIIDVNYYPVETARRSNLRHRPIGIGVQGLADTFILLGMAFESPEAQQLNKDIFET 553
NLNKIID+NYYPV A SN RHRPIGIGVQGLAD FIL+ FES EAQ LNK IFET
Sbjct: 402 RNLNKIIDINYYPVPEACLSNKRHRPIGIGVQGLADAFILMRYPFESAEAQLLNKQIFET 461
Query: 554 IYYHALKTSSEIAAKEGPYETYHNSPVSKGILQPDMWNVIPSDRWDWGVLRDMISKNGVR 613
IYY AL+ S ++A ++GPYETY SPVSKGILQ DMWNV P+D WDW VL++ I+K G+R
Sbjct: 462 IYYGALEASCDLAKEQGPYETYEGSPVSKGILQYDMWNVTPTDLWDWKVLKEKIAKYGIR 521
Query: 614 NSLLVAPMPTASTSQILGNNECFEPYTSNIYSRRVLSGEFVVVNKHLLHDLTEMGIWSPT 673
NSLL+APMPTAST+QILGNNE EPYTSNIY+RRVLSGEF +VN HLL DLTE G+W
Sbjct: 522 NSLLIAPMPTASTAQILGNNESIEPYTSNIYTRRVLSGEFQIVNPHLLKDLTERGLWHEE 581
Query: 674 IKNKIIYDDGSVQKIPEIPEELKMIYKTVWEIKQMTLVDMAVDRGCYIDQSQSLNIHMDQ 733
+KN+II +GS+Q IPEIP++LK +YKTVWEI Q T++ MA +RG +IDQSQSLNIH+ +
Sbjct: 582 MKNQIIACNGSIQSIPEIPDDLKQLYKTVWEISQKTVLKMAAERGAFIDQSQSLNIHIAE 641
Query: 734 PNFKKVTSLHFRTWSRGLKTGMYYLRSRAAA 764
PN+ K+TS+HF W +GLKTGMYYLR+RA
Sbjct: 642 PNYGKLTSMHFYGWKQGLKTGMYYLRTRAHH 672
>2xap_A Ribonucleoside-diphosphate reductase 1 subunit alpha;
oxidoreductase, DNA replication, allosteric enzyme,
nucleotide-binding; HET: NIY; 2.10A {Escherichia coli}
PDB: 2xo5_A* 2x0x_A 2r1r_A 3r1r_A* 3uus_A* 1r1r_A
2xav_A* 7r1r_A 2xax_A* 6r1r_A 2xaw_A* 5r1r_A 2xo4_A*
2xak_A* 4r1r_A* 2xaz_A* 2xay_A* 1rlr_A 1qfn_B
Length = 761
Score = 1108 bits (2867), Expect = 0.0
Identities = 208/813 (25%), Positives = 334/813 (41%), Gaps = 100/813 (12%)
Query: 1 MYVVKRDGRQEAVHFDKITARLKKLSYGLSTEHCDPVLVSQKVCAGVYKGVTTSQLDELA 60
+ V KRDG E ++ DKI L + GL + V + Y G+ TS + E
Sbjct: 5 LLVTKRDGSTERINLDKIHRVLDWAAEGL--HNVSISQVELRSHIQFYDGIKTSDIHETI 62
Query: 61 AETAAAMTT-NHPDYASLAARIAVSNLHKNTKKSFSETIKDMYNHYNERSGLKAPLIADD 119
+ AA + + + PDY LAAR+A+ +L K F + G + +D
Sbjct: 63 IKAAADLISRDAPDYQYLAARLAIFHLRKKAYGQFEPPALYDHVVKMVEMGKYDNHLLED 122
Query: 120 IYEIIMKNAACLDSEIIYDRDFDYDYFGFKTLERSYLL--KVQGKVVERPQHMLMRVSIG 177
E + +D+ I +DRD + Y K LE YL+ +V G++ E Q + + V+
Sbjct: 123 YTE---EEFKQMDTFIDHDRDMTFSYAAVKQLEGKYLVQNRVTGEIYESAQFLYILVAAC 179
Query: 178 IH-----KDDIDSAIKTYHMMSQRWFTHASPTLFNAGTPRPQLSSCFLVCMKDDSIEGIY 232
+ + + + Y +S + +P + TP Q SSC L+ DS++ I
Sbjct: 180 LFSNYPRETRLQYVKRFYDAVSTFKISLPTPIMSGVRTPTRQFSSCVLIEC-GDSLDSIN 238
Query: 233 ETLKECAVISKSAGGIGVSVHNIRATGSYIRGTNGTSNGIVPMLRVFNDTARYVDQGGGK 292
T GIG++ IRA GS IRG G +P + F + QGG
Sbjct: 239 ATSSAIVKYVSQRAGIGINAGRIRALGSPIRGGEAFHTGCIPFYKHFQTAVKSCSQGG-V 297
Query: 293 RKGAFAVYLEPWHADIFEFLNLKKNHGKEEHRARDLFYALWVPDLFMERVQTNGQWSLFC 352
R GA ++ WH ++ L LK N G E +R R + Y + + L R+ +LF
Sbjct: 298 RGGAATLFYPMWHLEVESLLVLKNNRGVEGNRVRHMDYGVQINKLMYTRLLKGEDITLFS 357
Query: 353 PNEASGLADCWGA---EFEKLYTHYEREGK-AKKVVQAQNLWFEILTSQIETGTPYMLFK 408
P++ GL D + A EFE+LYT YE++ K+ V+A L+ ++ + TG Y+
Sbjct: 358 PSDVPGLYDAFFADQEEFERLYTKYEKDDSIRKQRVKAVELFSLMMQERASTGRIYIQNV 417
Query: 409 DTCNRKSN-QQNLGTIKSSNLCTEIIEYTSPT--------ETAVCNLASIALPRFVREKD 459
D CN S + ++ SNLC EI T P E A+C L++ L
Sbjct: 418 DHCNTHSPFDPAIAPVRQSNLCLEIALPTKPLNDVNDENGEIALCTLSAFNLGAIN---- 473
Query: 460 VPVESHPSRIVGSRGSKNRFFDFEKLAEVTAIVTENLNKIIDVNYYPVETARRSNLRHRP 519
+ ++L E+ + L+ ++D YP+ A+R + R
Sbjct: 474 ---------------------NLDELEELAILAVRALDALLDYQDYPIPAAKRGAMGRRT 512
Query: 520 IGIGVQGLADTFILLGMAFESPEAQQLNKDIFETIYYHALKTSSEIAAKEGPYETYHNSP 579
+GIGV A G + A L FE I Y+ LK S+E+A ++G ++ +
Sbjct: 513 LGIGVINFAYYLAKHGKRYSDGSANNLTHKTFEAIQYYLLKASNELAKEQGACPWFNETT 572
Query: 580 VSKGILQPDMWN------VIPSDRWDWGVLRDMISKNGVRNSLLVAPMPTASTSQILGNN 633
+KGIL D + +DW LR+ I +G+RNS L A MP+ ++SQI
Sbjct: 573 YAKGILPIDTYKKDLDTIANEPLHYDWEALRESIKTHGLRNSTLSALMPSETSSQISNAT 632
Query: 634 ECFEPYTSNIYSRRVLSGEFVVVNKHLLHDLTEMGIWSPTIKNKIIYDDGSVQKIPEIPE 693
EP + + G V E
Sbjct: 633 NGIEPPRGYVSIKASKDGILRQVVPDY--------------------------------E 660
Query: 694 ELKMIYKTVWEIK-QMTLVDMAVDRGCYIDQSQSLNIHMDQPNF-------KKVTSLHFR 745
L Y+ +WE+ + + +IDQS S N + D F +++
Sbjct: 661 HLHDAYELLWEMPGNDGYLQLVGIMQKFIDQSISANTNYDPSRFPSGKVPMQQLLKDLLT 720
Query: 746 TWSRGLKTGMYYLRSRAAADAIKFTVDTSVFKE 778
+ G+KT +Y +R A+ + + S+ +
Sbjct: 721 AYKFGVKT-LYXQNTRDGAEDAQDDLVPSIQDD 752
>1peq_A Ribonucleoside-diphosphate reductase 2 alpha chain; stranded
alpha/beta barrel, protein-specificity-effector complex,
DTTP; HET: TTP; 2.80A {Salmonella typhimurium} SCOP:
a.98.1.1 c.7.1.2 PDB: 1peo_A* 1pem_A* 1peu_A* 2bq1_E*
Length = 714
Score = 952 bits (2462), Expect = 0.0
Identities = 169/766 (22%), Positives = 285/766 (37%), Gaps = 122/766 (15%)
Query: 59 LAAETAAAMTTNHPDYASLAARIAVSNL--HKNTKKSFSETIKDMYNHYNERSGLKAP-- 114
+A T + DY +L A + + + H K H S A
Sbjct: 1 MATTTPERVMQETMDYHALNAMLNLYDKAGHIQFDKDQQAIDAFFATHVRPHSVTFASQH 60
Query: 115 -----LIADDIYEIIM------KNAACLDSEIIYDRDFDYDYFGFKTLERSYLLK--VQG 161
L+ + Y+ + L + G SY LK
Sbjct: 61 ERLGTLVREGYYDDAVLARYDRAFVLRLFEHAHASGFRFQTFLGAWKFYTSYTLKTFDGK 120
Query: 162 KVVERPQHMLMRVSIGIHKDDIDSAIKTYHMMSQRWFTHASPTLFNAGTP-RPQLSSCFL 220
+ +E + + V++ + + D A + M F A+PT N G R +L SCFL
Sbjct: 121 RYLEHFEDRVTMVALTLAQGDETLATQLTDEMLSGRFQPATPTFLNCGKQQRGELVSCFL 180
Query: 221 VCMKDDSIEGIYETLKECAVISKSAGGIGVSVHNIRATGSYIRGTNGTSNGIVPMLRVFN 280
+ + +D++E I + +SK GG+ + N+R G+ I+ S+G++P++++
Sbjct: 181 LRI-EDNMESIGRAVNSALQLSKRGGGVAFLLSNLREAGAPIKRIENQSSGVIPVMKMLE 239
Query: 281 DTARYVDQGGGKRKGAFAVYLEPWHADIFEFLNLKKNHGKEEHRARDLFYALWVPDLFME 340
D Y +Q G R+GA AVYL H DI FL+ K+ + E+ R + L + +PD+
Sbjct: 240 DAFSYANQLG-ARQGAGAVYLHAHHPDILRFLDTKRENADEKIRIKTLSLGVVIPDITFR 298
Query: 341 RVQTNGQWSLFCPNEASGLADCWGAEFEKL-----YTHYEREGK-AKKVVQAQNLWFEIL 394
+ N Q +LF P + + +G F + Y + K + A++ + +
Sbjct: 299 LAKENAQMALFSPYD---IQRRYGKPFGDIAISERYDELIADPHVRKTYINARDFFQTLA 355
Query: 395 TSQIETGTPYMLFKDTCNRKSNQQNLGTIKSSNLCTEIIEYTSPT------------ETA 442
Q E+G PY++F+DT NR + G I SNLC+EI++ S +
Sbjct: 356 EIQFESGYPYIMFEDTVNRANPIA--GRINMSNLCSEILQVNSASRYDDNLDYTHIGHDI 413
Query: 443 VCNLASIALPRFVREKDVPVESHPSRIVGSRGSKNRFFDFEKLAEVTAIVTENLNKIIDV 502
CNL S+ + + D + L + D+
Sbjct: 414 SCNLGSLNIAHVM-------------------------DSPDIGRTVETAIRGLTAVSDM 448
Query: 503 NYY-PVETARRSNLRHRPIGIGVQGLADTFILLGMAFESPEAQQLNKDIFETIYYHALKT 561
++ V + N IG+G L G+A+ SPEA F TI +HA+ T
Sbjct: 449 SHIRSVPSIAAGNAASHAIGLGQMNLHGYLAREGIAYGSPEALDFTNLYFYTITWHAVHT 508
Query: 562 SSEIAAKEGP-YETYHNSPVSKGIL----QPDMWN--------------VIPSDRWDWGV 602
S +A + G + + S + G D W + R W
Sbjct: 509 SMRLARERGKTFAGFAQSRYASGDYFTQYLQDDWQPKTAKVRALFARSGITLPTREMWLK 568
Query: 603 LRDMISKNGVRNSLLVAPMPTASTSQILGNNECFEPYTSNIYSRRV-LSGEFVVVNKHLL 661
LRD + + G+ N L A PT S S I P + I R+ +G
Sbjct: 569 LRDDVMRYGIYNQNLQAVPPTGSISYINHATSSIHPIVAKIEIRKEGKTGRVYYPA---- 624
Query: 662 HDLTEMGIWSPTIKNKIIYDDGSVQKIPEIPEELKMIYKTVWEIKQMTLVDMAVDRGCYI 721
P + E +Y+ ++I ++D + ++
Sbjct: 625 ---------------------------PFMTNENLDMYQDAYDIGPEKIIDTYAEATRHV 657
Query: 722 DQSQSLNIHM-DQPNFKKVTSLHFRTWSRGLKTGMYYLRSRAAADA 766
DQ SL + D + + W +G+K+ +YY+R R A
Sbjct: 658 DQGLSLTLFFPDTATTRDINKAQIYAWRKGIKS-LYYIRLRQLALE 702
>3o0q_A Ribonucleoside-diphosphate reductase; alpha/beta barrel,
adenosylcobalamin dependent, ribonucle reductase; HET:
TTP GDP ADN; 1.80A {Thermotoga maritima} PDB: 1xjf_A*
1xjg_A* 1xje_A* 1xjk_A* 1xjm_A* 1xjn_A* 3o0n_A* 3o0o_A*
1xjj_A*
Length = 644
Score = 858 bits (2220), Expect = 0.0
Identities = 159/692 (22%), Positives = 272/692 (39%), Gaps = 99/692 (14%)
Query: 131 LDSEIIYDRDFDYDYFGFKTLERSYLLK-VQGKVVERP-QHMLMRVSIGI---------- 178
L I D + L Y +K + G +E + + RV+ +
Sbjct: 3 LSDLISRWIDVEPSKNAQIILRDRYFMKDLDGNYLETKWEDVARRVARVVATAELLNPSY 62
Query: 179 -HKDDIDS----AIKTYHMMSQRWFTHASPTLFNAG------------------------ 209
+ +D + ++ R F SPTLFNAG
Sbjct: 63 KKNEKLDRIKEWEDIFFRVLKARLFIPNSPTLFNAGLGVKHDLLWKPIDQMTLEDYEEIY 122
Query: 210 ---TPRPQLSSCFLVCMKDDSIEGIYETLKECAVISKSAGGIGVSVHNIRATGSYIRGTN 266
LS+CF+V + DSIE I+E +KE A+I+K GG+G + +R GS++ GT+
Sbjct: 123 RSRNHLHMLSACFVVPV-GDSIEEIFEAVKEYALITKVGGGVGSNFSELRPKGSFVAGTH 181
Query: 267 GTSNGIVPMLRVFNDTARYVDQGGGKRKGAFAVYLEPWHADIFEFLNLKKNHGKEEH-RA 325
G ++G V + VFN V Q G +R+GA L H DI EF++ KK + E
Sbjct: 182 GKASGPVSFMHVFNSAISVVKQ-GSRRRGALMGILNINHPDIEEFIDAKKENTGEAVLNF 240
Query: 326 RDLFYALWV-PDLFMERVQTNGQWSLFCPNEASGLADCWGAEFEKLYTHYEREGKAKKVV 384
+L + ++ + +G+ L P +K V
Sbjct: 241 FNLSVGFPMDKKEILKLYEEDGELELSHP-----------------------RSTIRKKV 277
Query: 385 QAQNLWFEILTSQIETGTPYMLFKDTCNRKSNQQNLGTIKSSNLCTEIIEYTSPTETAVC 444
+ + L+ +I T+ ++G P + F N+ I S+N C EI ++ C
Sbjct: 278 KIRELFRKIATNAWKSGDPGLAFLGEMNKYYPLYPHRKINSTNPCGEI----GLSDYEAC 333
Query: 445 NLASIALPRFVREKDVPVESHPSRIVGSRGSKNRFFDFEKLAEVTAIVTENLNKIIDVNY 504
NL SI + +F N F D E L E+ I L+ +IDVN
Sbjct: 334 NLGSIDVAKFY--------------------NNGFVDLEALQELVQIAVRFLDNVIDVNV 373
Query: 505 YPVETARRSNLRHRPIGIGVQGLADTFILLGMAFESPEAQQLNKDIFETIYYHALKTSSE 564
+P++ ++ R +G+G+ G AD L + + S EA+ ++ I HA +TS E
Sbjct: 374 FPIDKITKAVKESRRLGLGIMGFADLLYKLEIPYNSQEARDFAANLMAFIALHAHRTSYE 433
Query: 565 IAAKEGPYETYHNSPVSKGILQPDMWNVIPSDRWDWGVLRDMISKNGVRNSLLVAPMPTA 624
+ ++G + S + + S+ D ++K RN L+ PT
Sbjct: 434 LGKEKGNFPLLEISRYRTE-DNFVPFAMGMSNYDDEIREVMKMTKEFRRNVALLTIAPTG 492
Query: 625 STSQILGNNECFEPYTSNIYSRRVLSGEFVVVNKHLLHDLTEMGIWSPTIK--NKIIYDD 682
S S I + EP Y+R V + ++ + + +K K + +
Sbjct: 493 SISNIADTSSGLEPNFLLAYTRFVTKEDGTKEPLLYVNQVLREKLNPEILKRIEKELIEK 552
Query: 683 GSVQKIPEIPEELKMIYKTVWEIKQMTLVDMAVDRGCYIDQSQSLNIHMDQ-PNFKKVTS 741
GS++ IP++PE++K ++ +I M + M Y+D + S I+M Q V +
Sbjct: 553 GSLKDIPDVPEKIKKVFVVALDIDPMDHLLMQDAFQRYVDNNISKTINMPQSATVDDVLN 612
Query: 742 LHFRTWSRGLKTGMYYLRSRAAADAIKFTVDT 773
++ ++ Y + + T
Sbjct: 613 VYLEALRTNVRGITVYRDGSLQTQVLTKALKT 644
>2pff_B Fatty acid synthase subunit beta; fatty acid synthase,
acyl-carrier-protein, beta-ketoacyl RED beta-ketoacyl
synthase, dehydratase; 4.00A {Saccharomyces cerevisiae}
Length = 2006
Score = 69.7 bits (170), Expect = 3e-12
Identities = 111/613 (18%), Positives = 182/613 (29%), Gaps = 214/613 (34%)
Query: 16 DKITARLKKLSYGLSTEHCDPVLVSQKVCAGVYKGVTTSQLDE-----LAAETAAAMTTN 70
D + R LS+G S EH +LV + SQL E L T +
Sbjct: 2 DAYSTRPLTLSHG-SLEH--VLLVP----TASF--FIASQLQEQFNKILPEPTEGFAADD 52
Query: 71 HP-DYASLAAR----IAVSNLHKNTKKSFSETIKDMYNHYNERSGLKAPLIADDIYEIIM 125
P A L + ++ S + + F + + + E L+ +DI+ +
Sbjct: 53 EPTTPAELVGKFLGYVS-SLVEPSKVGQFDQVLNLCLTEF-ENCYLEG----NDIHAL-- 104
Query: 126 KNAACLDSEIIYDRDFDYDYFGFKTLERSYL--LKVQGKVVERP-QHMLMR-VSIGIHK- 180
AA L E D K L ++Y+ + + ++ L R V G +
Sbjct: 105 --AAKLLQEN------DTTLVKTKELIKNYITARIMAKRPFDKKSNSALFRAVGEGNAQL 156
Query: 181 --------------DDIDSAIKTYHMMSQRWFTHASPTLFNAGTPRPQLSSCF------L 220
+++ +TYH++ ++ TL F L
Sbjct: 157 VAIFGGQGNTDDYFEELRDLYQTYHVLVGDLIKFSAETLSELIRTTLDAEKVFTQGLNIL 216
Query: 221 VCMKDDSIEGIYETLKECAVISKSAGGIGVS--VHNI---RATG-------SYIRGTNGT 268
+++ S + L + S IGV H + + G SY++G G
Sbjct: 217 EWLENPSNTPDKDYLLSIPI---SCPLIGVIQLAHYVVTAKLLGFTPGELRSYLKGATGH 273
Query: 269 SNGIVPMLRVFNDTARYVDQGGGKRKGAFAVYLEPWHADIFE-FLNLKKNHGKEEHRARD 327
S G+V TA A A D +E F +
Sbjct: 274 SQGLV--------TAV-----------AIA------ETDSWESFFVSVRK---------- 298
Query: 328 LFYALWVPDLFMERVQTNGQWSLFCPNEASGLADCW-GAEFEKLYTHYEREGKAKKVVQA 386
A+ LF + G + Y +
Sbjct: 299 ---AI--------------TV-LF-----------FIGVRCYEAYPNT------------ 317
Query: 387 QNLWFEILTSQIET--GTP-YMLFKDTCNRKSNQQNLGTIKSSNLCTEIIEYTSPTETAV 443
+L IL +E G P ML + + + +Q + +N P V
Sbjct: 318 -SLPPSILEDSLENNEGVPSPML---SISNLTQEQVQDYVNKTNS-------HLPAGKQV 366
Query: 444 CNLASIAL---PR-FV---------------REKDVPVESHPSRIVGS-RGSK--NRF-- 479
I+L + V R+ P SRI S R K NRF
Sbjct: 367 ----EISLVNGAKNLVVSGPPQSLYGLNLTLRKAKAPSGLDQSRIPFSERKLKFSNRFLP 422
Query: 480 ----FDFEKLAEVTAIVTENLNKIIDVNY------YPVE-TARRSNLRHRPIGIGVQGLA 528
F L + ++ ++L K +V++ PV T S+LR I + +
Sbjct: 423 VASPFHSHLLVPASDLINKDLVK-NNVSFNAKDIQIPVYDTFDGSDLRVLSGSI-SERIV 480
Query: 529 DTFILLGMAFESP 541
D P
Sbjct: 481 D------CIIRLP 487
Score = 69.3 bits (169), Expect = 4e-12
Identities = 85/524 (16%), Positives = 145/524 (27%), Gaps = 193/524 (36%)
Query: 2 YVVKRDGRQEAVHFDKITARLKKL------SYGLSTE--HCDPVLVSQKVCAGVYKGVTT 53
YV + FD++ L Y L H L ++
Sbjct: 67 YVSSLVEPSKVGQFDQV---LNLCLTEFENCY-LEGNDIHA---LAAK--LLQENDTTLV 117
Query: 54 SQLDELAAETAAAMTTNHPD---YASLAARIAVSNLHK---------NTKKSFSETIKDM 101
+ + A + P S R + NT F E ++D+
Sbjct: 118 KTKELIKNYITARIMAKRPFDKKSNSALFRAVGEGNAQLVAIFGGQGNTDDYFEE-LRDL 176
Query: 102 YNHYNERSGLKAPLIADDIYEIIMKNAACL--------DSEIIYDRDFDY---------- 143
Y Y+ L+ D +I +A L D+E ++ + +
Sbjct: 177 YQTYH-------VLVGD----LIKFSAETLSELIRTTLDAEKVFTQGLNILEWLENPSNT 225
Query: 144 ---DYF----------GFKTLERSYL--LKVQGKVVERPQHMLMRVSIGI--HKDDI--- 183
DY G L Y+ K+ G P + + G H +
Sbjct: 226 PDKDYLLSIPISCPLIGVIQLA-HYVVTAKLLGF---TPGELRSYLK-GATGHSQGLVTA 280
Query: 184 -------------DSAIKTYHMM------SQRWFTHAS--PTLF------NAGTPRPQLS 216
S K ++ + + S P++ N G P P LS
Sbjct: 281 VAIAETDSWESFFVSVRKAITVLFFIGVRCYEAYPNTSLPPSILEDSLENNEGVPSPMLS 340
Query: 217 SCFLVCMKDDSIEGIYETLKECAVISKSAGGIGVSVHNIRATGSYIRGTNGTSNGIV--- 273
+ + + E + + + + + + +S+ NG N +V
Sbjct: 341 ----I--SNLTQEQVQDYVNKTNSHLPAGKQVEISLV------------NGAKNLVVSGP 382
Query: 274 PM-LRVFNDTARYV------DQG---GGKRKGAFAV-YL---EPWH----ADIFEFLNLK 315
P L N T R DQ +RK F+ +L P+H + +N
Sbjct: 383 PQSLYGLNLTLRKAKAPSGLDQSRIPFSERKLKFSNRFLPVASPFHSHLLVPASDLINKD 442
Query: 316 KNHGKEEHRARDLFYALW-------------------VPDLFMERVQTNGQWSL------ 350
A+D+ ++ V + V +W
Sbjct: 443 LVKNNVSFNAKDIQIPVYDTFDGSDLRVLSGSISERIVDCIIRLPV----KWETTTQFKA 498
Query: 351 -----FCPNEASGLADCWGAEFEKLYTHYEREGKAKKVVQAQNL 389
F P ASGL L TH ++G +V+ A L
Sbjct: 499 THILDFGPGGASGLG--------VL-THRNKDGTGVRVIVAGTL 533
Score = 42.0 bits (98), Expect = 0.001
Identities = 43/278 (15%), Positives = 87/278 (31%), Gaps = 106/278 (38%)
Query: 573 ETYHNSPVSKGILQPDMWNVIPSDRWDWGVLRDMISKNGVRNSLLVAPMPTAST------ 626
+ Y S ++ D+W +R D G +V P T
Sbjct: 1634 DLYKTSKAAQ-----DVW-----NRAD----NHFKDTYGFSILDIVINNPVNLTIHFGGE 1679
Query: 627 -SQILGNNECFEPYTSNIYSRRVLSGEFVVVNKHLLHDLTEMGIWSPTIKNKIIYDDGSV 685
+ + N Y++ I+ ++ G+ + + + ++ E +
Sbjct: 1680 KGKRIREN-----YSAMIF-ETIVDGK--LKTEKIFKEINEH-------STSYTFRS--- 1721
Query: 686 QKIPEIPEELKMIYKTVWEIKQ--MTLVDMAV-----DRGCYIDQSQ-----SL------ 727
+ L + T + Q +TL++ A +G I SL
Sbjct: 1722 ------EKGL--LSAT--QFTQPALTLMEKAAFEDLKSKG-LIPADATFAGHSLGEYAAL 1770
Query: 728 ----NIHMDQPNFKKVTSLHFRTWSRGL--------------KTGMYYLR-SRAAA---- 764
++ M + + + F RG+ GM + R AA
Sbjct: 1771 ASLADV-MS---IESLVEVVFY---RGMTMQVAVPRDELGRSNYGMIAINPGRVAASFSQ 1823
Query: 765 DAIKFTVDTSVFKEKPEKPELV---VDDETKMAQVVCS 799
+A+++ V+ V K E+V V+++ Q V +
Sbjct: 1824 EALQYVVE-RVGKRTGWLVEIVNYNVENQ----QYVAA 1856
Score = 32.3 bits (73), Expect = 0.74
Identities = 35/274 (12%), Positives = 77/274 (28%), Gaps = 78/274 (28%)
Query: 518 RPIGIGVQGLADTFILLGMAFESPE-----AQQLNKDIFETIYYHALKT-------SSE- 564
RP+ + L ++ P A QL ++ F I + ++
Sbjct: 7 RPLTLSHGSLEHVLLV-------PTASFFIASQL-QEQFNKILPEPTEGFAADDEPTTPA 58
Query: 565 ---------IAAKEGPYETYHNSPVSKGILQPDMWNVIPSDRWDWGVLRDMISKNGVRNS 615
+++ P + V L + N + ++
Sbjct: 59 ELVGKFLGYVSSLVEPSKVGQFDQVLNLCLT--------------EFENCYLEGNDI-HA 103
Query: 616 LLVAPMPTASTSQILGNNECFEPYTSNIYSRRVLSGEFVVVNKH---LLHDLTEMGIWSP 672
L A + + + ++ E + Y + R+++ K L + E
Sbjct: 104 L-AAKLLQENDTTLVKTKELIKNY----ITARIMAKR-PFDKKSNSALFRAVGE------ 151
Query: 673 TIKNKIIYDDGSV---QKIPEIP-EELKMIYKTVWEIKQMTLVDMAVDRGCYIDQSQSLN 728
N + ++ Q + EEL+ +Y+T + L+ + +
Sbjct: 152 --GNAQLV---AIFGGQGNTDDYFEELRDLYQTYHVLVG-DLIKFSAET----LSELIRT 201
Query: 729 IHMDQPNFKKVTSLHFRTWSRGLKT--GMYYLRS 760
+ F + L+ W YL S
Sbjct: 202 TLDAEKVFTQG--LNILEWLENPSNTPDKDYLLS 233
Score = 30.8 bits (69), Expect = 2.6
Identities = 28/129 (21%), Positives = 40/129 (31%), Gaps = 50/129 (38%)
Query: 3 VVKRDGR--QEAVHFDK--------ITARLKKLSYGLSTEHCDPV----------LVS-- 40
V R G Q AV D+ I +++ S E V LV
Sbjct: 1786 VFYR-GMTMQVAVPRDELGRSNYGMIAINPGRVAASFSQEALQYVVERVGKRTGWLVEIV 1844
Query: 41 -------QKVCAGVYKGVTTSQLDELAAETAAAMTTNHPDYASLAARIAVSNLHKNTKKS 93
Q V AG LD + TN ++ L +I + L +KS
Sbjct: 1845 NYNVENQQYVAAG-----DLRALDTV---------TNVLNFIKL-QKIDIIEL----QKS 1885
Query: 94 FS-ETIKDM 101
S E ++
Sbjct: 1886 LSLEEVEGH 1894
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis,
programmed cell death; HET: DTP; 6.90A {Drosophila
melanogaster} PDB: 3iz8_A*
Length = 1221
Score = 42.9 bits (100), Expect = 5e-04
Identities = 75/554 (13%), Positives = 145/554 (26%), Gaps = 158/554 (28%)
Query: 29 LSTEHCDPVLVSQKVCAGVYKGVTTSQLDELAAETAAAM--TTNHPDYASLAARIAVSNL 86
LS E D +++S+ +G + T L E +Y L + I
Sbjct: 46 LSKEEIDHIIMSKDAVSGTLRLFWT--LLSKQEEMVQKFVEEVLRINYKFLMSPIKTEQR 103
Query: 87 HKNTK-KSFSETIKDMYNH------YN-ER----SGLKAPLIADDIYEII----MK---- 126
+ + + E +YN YN R L+ L+ + + +
Sbjct: 104 QPSMMTRMYIEQRDRLYNDNQVFAKYNVSRLQPYLKLRQALLELRPAKNVLIDGVLGSGK 163
Query: 127 ----NAACLDSEIIYDRDFDYDY--FGFKTLERSYLLKVQ-------GKVVERPQHMLMR 173
CL ++ DF + + L +Q R H
Sbjct: 164 TWVALDVCLSYKVQCKMDFKIFWLNLKNCNSPETVLEMLQKLLYQIDPNWTSRSDHS--- 220
Query: 174 VSIGIHKDDIDSAIKTYHMMSQR-----------W-------FTHASPTLF--------- 206
+I + I + ++ + S+ F + L
Sbjct: 221 SNIKLRIHSIQAELRRL-LKSKPYENCLLVLLNVQNAKAWNAFNLSCKILLTTRFKQVTD 279
Query: 207 ---NAGTPRPQLSSCFLVCMKDDS-------IEGIYETLKE--CAVISKSAGGIGVSVHN 254
A T L + D+ ++ + L + I S+ +
Sbjct: 280 FLSAATTTHISLDHHSMTLTPDEVKSLLLKYLDCRPQDLPREVLTTNPRRLSIIAESIRD 339
Query: 255 IRATGSYIR--GTNGTSNGIVPMLRVFNDT---ARYVDQGGGKRKGAFAVYLE----P-- 303
AT + + + I L V + +V+ P
Sbjct: 340 GLATWDNWKHVNCDKLTTIIESSLNVLEPAEYRKMFDR---------LSVFPPSAHIPTI 390
Query: 304 -----WHADIFE--FLNLKKNHGK---EEHRARDLFYALWVPDLFME-RVQTNGQWSL-- 350
W I + + K H E+ +P +++E +V+ +++L
Sbjct: 391 LLSLIWFDVIKSDVMVVVNKLHKYSLVEKQPKESTIS---IPSIYLELKVKLENEYALHR 447
Query: 351 -----------FCPNEAS-------------------GLADCWGAEFEKLYTHYE-REGK 379
F ++ + F ++ + E K
Sbjct: 448 SIVDHYNIPKTFDSDDLIPPYLDQYFYSHIGHHLKNIEHPERM-TLFRMVFLDFRFLEQK 506
Query: 380 AKKVVQAQNLWFEILT--SQIETGTPYMLFKDTCNRKSNQQNLGTIKSSNLCTEIIEYTS 437
+ A N IL Q++ PY+ N ++ + I E S
Sbjct: 507 IRHDSTAWNASGSILNTLQQLKFYKPYI----CDNDPKYERLVNAILDFLPKIEENLICS 562
Query: 438 PTETAVCNLASIAL 451
+L IAL
Sbjct: 563 KY----TDLLRIAL 572
Score = 37.5 bits (86), Expect = 0.021
Identities = 54/324 (16%), Positives = 96/324 (29%), Gaps = 103/324 (31%)
Query: 536 MAFESPEAQQLNKDIFETIYYHALK----------------TSSEI-------AAKEGPY 572
M FE+ E Q KDI ++ A + EI A G
Sbjct: 7 MDFETGEHQYQYKDILS-VFEDAFVDNFDCKDVQDMPKSILSKEEIDHIIMSKDAVSGTL 65
Query: 573 ------ETYHNSPVSK---GILQPDMWNVIPSDRWDWGVLRDMISKNGVRNSLLVAPMPT 623
+ V K +L+ + + + L I R ++ M
Sbjct: 66 RLFWTLLSKQEEMVQKFVEEVLRIN---------YKF--LMSPIKTE-QRQPSMMTRMYI 113
Query: 624 ASTSQILGNNECFEPYTSNIYS-------RRVL----SGEFVVVNKHLLHDLTEMGIWSP 672
++ +N+ F Y N+ R+ L + V++ + G
Sbjct: 114 EQRDRLYNDNQVFAKY--NVSRLQPYLKLRQALLELRPAKNVLI-----DGVLGSGKTWV 166
Query: 673 TIKNKIIYDDGSVQKIPEIPEELKMIYKTVWEIKQMTLVDMAVDRGCYIDQSQSLNIHMD 732
+ + VQ KM +K W + L + ++ Q L +D
Sbjct: 167 ALD---VCLSYKVQC--------KMDFKIFW----LNLKNCNSPETV-LEMLQKLLYQID 210
Query: 733 QPNFKKVTSLHFRTWSRGLKTGMYYLRSRAAADAIKFTVDTSVFKEKPEKPELVVDDETK 792
PN+ SR + LR + ++ + K KP + L+V +
Sbjct: 211 -PNWT----------SRSDHSSNIKLRIHSIQAELR-----RLLKSKPYENCLLVLLNVQ 254
Query: 793 MAQVV------CS--LTNREECMA 808
A+ C LT R + +
Sbjct: 255 NAKAWNAFNLSCKILLTTRFKQVT 278
>1qzv_F Plant photosystem I: subunit PSAF; photosynthesis,plant
photosynthetic reaction center, peripheral antenna; HET:
CL1 PQN; 4.44A {Pisum sativum} SCOP: i.5.1.1
Length = 154
Score = 34.2 bits (77), Expect = 0.077
Identities = 14/50 (28%), Positives = 21/50 (42%), Gaps = 20/50 (40%)
Query: 723 QSQSLNIHMDQPNFKKVTSLHFRTWSRGLKTGMYYLRSRAAADAIKFTVD 772
+ Q+L KK+ + LK +Y S A A AIK T++
Sbjct: 18 EKQAL---------KKLQA--------SLK--LYADDS-APALAIKATME 47
>1m2t_B Mistletoe lectin I B chain; ribosome inactivation, ribosome
inhibitor, hydrolase; HET: NAG FUC ADE; 1.89A {Viscum
album} SCOP: b.42.2.1 b.42.2.1 PDB: 2r9k_B* 3d7w_B*
3cef_B* 1sz6_B* 1pum_B* 1puu_B* 2rg9_B* 3o5w_B* 1onk_B*
1oql_B* 1tfm_B* 1pc8_B* 1yf8_B* 1ce7_B* 2mll_B*
Length = 263
Score = 30.9 bits (69), Expect = 1.3
Identities = 14/51 (27%), Positives = 19/51 (37%), Gaps = 6/51 (11%)
Query: 401 GTPYMLFKDTCNRKSNQQ----NLGTIKSSNLCTEIIEYTSPTETAV--CN 445
G L+ N NQ GTI+S+ C YT+ + CN
Sbjct: 32 GNQIQLWPSKSNNDPNQLWTIKKDGTIRSNGSCLTTYGYTAGVYVMIFDCN 82
>1lst_A Lysine, arginine, ornithine-binding protein; amino-acid binding
protein; HET: LYS; 1.80A {Salmonella typhimurium} SCOP:
c.94.1.1 PDB: 2lao_A 1lag_E* 1lah_E 1laf_E 1hsl_A*
1hpb_P*
Length = 239
Score = 29.9 bits (68), Expect = 2.5
Identities = 14/65 (21%), Positives = 24/65 (36%), Gaps = 12/65 (18%)
Query: 146 FGFKTLERSYLLKVQGKVVERPQHMLMRVSIGIHKDD------IDSAIK------TYHMM 193
GF G V+ ++ +G+ KDD D A+ TY M
Sbjct: 167 EGFLKQPAGKEYAFAGPSVKDKKYFGDGTGVGLRKDDTELKAAFDKALTELRQDGTYDKM 226
Query: 194 SQRWF 198
++++F
Sbjct: 227 AKKYF 231
>1jmt_A Splicing factor U2AF 35 kDa subunit; RRM, RNA splicing, proline,
PPII helix, peptide recognition, RNA binding protein;
2.20A {Homo sapiens} SCOP: d.58.7.3
Length = 104
Score = 27.5 bits (61), Expect = 7.3
Identities = 9/61 (14%), Positives = 20/61 (32%)
Query: 138 DRDFDYDYFGFKTLERSYLLKVQGKVVERPQHMLMRVSIGIHKDDIDSAIKTYHMMSQRW 197
+D + T +V+ V + ++ + + A K ++ RW
Sbjct: 33 QEHYDEFFEEVFTEMEEKYGEVEEMNVCDNLGDHLVGNVYVKFRREEDAEKAVIDLNNRW 92
Query: 198 F 198
F
Sbjct: 93 F 93
Database: pdb70
Posted date: Sep 4, 2012 3:40 AM
Number of letters in database: 6,701,793
Number of sequences in database: 27,921
Lambda K H
0.319 0.134 0.400
Gapped
Lambda K H
0.267 0.0476 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27921
Number of Hits to DB: 12,504,878
Number of extensions: 767797
Number of successful extensions: 1398
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1338
Number of HSP's successfully gapped: 26
Length of query: 811
Length of database: 6,701,793
Length adjustment: 101
Effective length of query: 710
Effective length of database: 3,881,772
Effective search space: 2756058120
Effective search space used: 2756058120
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 61 (27.9 bits)