RPS-BLAST 2.2.26 [Sep-21-2011]
Database: scop70_1_75
13,730 sequences; 2,407,596 total letters
Searching..................................................done
Query= 003561
(811 letters)
>d1rlra2 c.7.1.2 (A:222-748) R1 subunit of ribonucleotide reductase,
C-terminal domain {Escherichia coli [TaxId: 562]}
Length = 525
Score = 428 bits (1101), Expect = e-142
Identities = 144/571 (25%), Positives = 229/571 (40%), Gaps = 71/571 (12%)
Query: 216 SSCFLVCMKDDSIEGIYETLKECAVISKSAGGIGVSVHNIRATGSYIRGTNGTSNGIVPM 275
SSC L+ DS++ I T GIG++ IRA GS IRG G +P
Sbjct: 2 SSCVLIEC-GDSLDSINATSSAIVKYVSQRAGIGINAGRIRALGSPIRGGEAFHTGCIPF 60
Query: 276 LRVFNDTARYVDQGGGKRKGAFAVYLEPWHADIFEFLNLKKNHGKEEHRARDLFYALWVP 335
+ F + Q GG R GA ++ WH ++ L LK N G E +R R + Y + +
Sbjct: 61 YKHFQTAVKSCSQ-GGVRGGAATLFYPMWHLEVESLLVLKNNRGVEGNRVRHMDYGVQIN 119
Query: 336 DLFMERVQTNGQWSLFCPNEASGLADCWGAEFEKLYTHYE----REGKAKKVVQAQNLWF 391
L R+ +LF P++ GL D + A+ E+ Y + K+ V+A L+
Sbjct: 120 KLMYTRLLKGEDITLFSPSDVPGLYDAFFADQEEFERLYTKYEKDDSIRKQRVKAVELFS 179
Query: 392 EILTSQIETGTPYMLFKDTCNRKSNQ-QNLGTIKSSNLCTEIIEYTSPTETAVCNLASIA 450
++ + TG Y+ D CN S + ++ SNLC EI T P IA
Sbjct: 180 LMMQERASTGRIYIQNVDHCNTHSPFDPAIAPVRQSNLCLEIALPTKPLNDVNDENGEIA 239
Query: 451 LPRFVREKDVPVESHPSRIVGSRGSKNRFFDFEKLAEVTAIVTENLNKIIDVNYYPVETA 510
L + ++L E+ + L+ ++D YP+ A
Sbjct: 240 LCTLSAFNL-----------------GAINNLDELDELAILAVRALDALLDYQDYPIPAA 282
Query: 511 RRSNLRHRPIGIGVQGLADTFILLGMAFESPEAQQLNKDIFETIYYHALKTSSEIAAKEG 570
+R + R +GIGV A G + A L FE I Y+ LK S+E+A ++G
Sbjct: 283 KRGAMGRRTLGIGVINFAYYLAKHGKRYSDGSANNLTHKTFEAIQYYLLKASNELAKEQG 342
Query: 571 PYETYHNSPVSKGILQPDMWNVIPSD------RWDWGVLRDMISKNGVRNSLLVAPMPTA 624
++ + +KGIL D + +DW LR+ I +G+RNS L A MP+
Sbjct: 343 ACPWFNETTYAKGILPIDTYKKDLDTIANEPLHYDWEALRESIKTHGLRNSTLSALMPSE 402
Query: 625 STSQILGNNECFEPYTSNIYSRRVLSGEFVVVNKHLLHDLTEMGIWSPTIKNKIIYDDGS 684
++SQI EP + + DG
Sbjct: 403 TSSQISNATNGIEPPRGYVSIKASK--------------------------------DGI 430
Query: 685 VQKIPEIPEELKMIYKTVWEIK-QMTLVDMAVDRGCYIDQSQSLNIHMDQPNF------- 736
++++ E L Y+ +WE+ + + +IDQS S N + D F
Sbjct: 431 LRQVVPDYEHLHDAYELLWEMPGNDGYLQLVGIMQKFIDQSISANTNYDPSRFPSGKVPM 490
Query: 737 KKVTSLHFRTWSRGLKTGMYYLRSRAAADAI 767
+++ + G+KT +YY +R D +
Sbjct: 491 QQLLKDLLTAYKFGVKT-LYYQNTRDDIDDL 520
>d1peqa2 c.7.1.2 (A:175-699) R1 subunit of ribonucleotide reductase,
C-terminal domain {Salmonella typhimurium [TaxId:
90371]}
Length = 525
Score = 359 bits (921), Expect = e-115
Identities = 128/571 (22%), Positives = 220/571 (38%), Gaps = 72/571 (12%)
Query: 215 LSSCFLVCMKDDSIEGIYETLKECAVISKSAGGIGVSVHNIRATGSYIRGTNGTSNGIVP 274
L SCFL+ + +D++E I + +SK GG+ + N+R G+ I+ S+G++P
Sbjct: 1 LVSCFLLRI-EDNMESIGRAVNSALQLSKRGGGVAFLLSNLREAGAPIKRIENQSSGVIP 59
Query: 275 MLRVFNDTARYVDQGGGKRKGAFAVYLEPWHADIFEFLNLKKNHGKEEHRARDLFYALWV 334
++++ D Y +Q G R+GA AVYL H DI FL+ K+ + E+ R + L + +
Sbjct: 60 VMKMLEDAFSYANQLG-ARQGAGAVYLHAHHPDILRFLDTKRENADEKIRIKTLSLGVVI 118
Query: 335 PDLFMERVQTNGQWSLFCPNEASGLADCWGAEF---EKLYTHYEREGKAKKVVQAQNLWF 391
PD+ + N Q +LF P + + E+ K + A++ +
Sbjct: 119 PDITFRLAKENAQMALFSPYDIQRRYGKPFGDIAISERYDELIADPHVRKTYINARDFFQ 178
Query: 392 EILTSQIETGTPYMLFKDTCNRKSNQQNLGTIKSSNLCTEIIEYTSPTETAVCNLASIAL 451
+ Q E+G PY++F+DT NR + I SNLC+EI++ S + NL +
Sbjct: 179 TLAEIQFESGYPYIMFEDTVNRANPIAG--RINMSNLCSEILQVNSASRY-DDNLDYTHI 235
Query: 452 PRFVREKDVPVESHPSRIVGSRGSKNRFFDFEKLAEVTAIVTENLNKIIDVNYYPVETAR 511
+ + + D + E ++ + V +
Sbjct: 236 GHDISCNLGSL---------NIAHVMDSPDIGRTVETAIRGLTAVS--DMSHIRSVPSIA 284
Query: 512 RSNLRHRPIGIGVQGLADTFILLGMAFESPEAQQLNKDIFETIYYHALKTSSEIAAKEGP 571
N IG+G L G+A+ SPEA F TI +HA+ TS +A + G
Sbjct: 285 AGNAASHAIGLGQMNLHGYLAREGIAYGSPEALDFTNLYFYTITWHAVHTSMRLARERGK 344
Query: 572 -YETYHNSPVSKGIL------------------QPDMWNVIPSDRWDWGVLRDMISKNGV 612
+ + S + G + R W LRD + + G+
Sbjct: 345 TFAGFAQSRYASGDYFTQYLQDDWQPKTAKVRALFARSGITLPTREMWLKLRDDVMRYGI 404
Query: 613 RNSLLVAPMPTASTSQILGNNECFEPYTSNIYSRRV-LSGEFVVVNKHLLHDLTEMGIWS 671
N L A PT S S I P + I R+ +G +
Sbjct: 405 YNQNLQAVPPTGSISYINHATSSIHPIVAKIEIRKEGKTGRVYYPAPFM----------- 453
Query: 672 PTIKNKIIYDDGSVQKIPEIPEELKMIYKTVWEIKQMTLVDMAVDRGCYIDQSQSLNIHM 731
E +Y+ ++I ++D + ++DQ SL +
Sbjct: 454 --------------------TNENLDMYQDAYDIGPEKIIDTYAEATRHVDQGLSLTLFF 493
Query: 732 -DQPNFKKVTSLHFRTWSRGLKTGMYYLRSR 761
D + + W +G+K+ +YY+R R
Sbjct: 494 PDTATTRDINKAQIYAWRKGIKS-LYYIRLR 523
>d1rlra1 a.98.1.1 (A:10-221) R1 subunit of ribonucleotide reductase,
N-terminal domain {Escherichia coli [TaxId: 562]}
Length = 212
Score = 184 bits (468), Expect = 3e-54
Identities = 51/217 (23%), Positives = 89/217 (41%), Gaps = 13/217 (5%)
Query: 6 RDGRQEAVHFDKITARLKKLSYGLSTEHCDPVLVSQKVCAGVYKGVTTSQLDELAAETAA 65
RDG E ++ DKI L + GL + V + Y G+ TS + E + AA
Sbjct: 1 RDGSTERINLDKIHRVLDWAAEGL--HNVSISQVELRSHIQFYDGIKTSDIHETIIKAAA 58
Query: 66 A-MTTNHPDYASLAARIAVSNLHKNTKKSFSETIKDMYNHYNERSGLKAPLIADDIYEII 124
++ + PDY LAAR+A+ +L K F + G + +
Sbjct: 59 DLISRDAPDYQYLAARLAIFHLRKKAYGQFEPPALYDHVVKMVEMGKYDN---HLLEDYT 115
Query: 125 MKNAACLDSEIIYDRDFDYDYFGFKTLERSYLLKVQ--GKVVERPQHMLMRVSIGIHKD- 181
+ +D+ I +DRD + Y K LE YL++ + G++ E Q + + V+ + +
Sbjct: 116 EEEFKQMDTFIDHDRDMTFSYAAVKQLEGKYLVQNRVTGEIYESAQFLYILVAACLFSNY 175
Query: 182 ----DIDSAIKTYHMMSQRWFTHASPTLFNAGTPRPQ 214
+ + Y +S + +P + TP Q
Sbjct: 176 PRETRLQYVKRFYDAVSTFKISLPTPIMSGVRTPTRQ 212
>d1l1la_ c.7.1.4 (A:) B12-dependent (class II) ribonucleotide
reductase {Lactobacillus leichmannii [TaxId: 28039]}
Length = 721
Score = 150 bits (380), Expect = 2e-38
Identities = 64/524 (12%), Positives = 123/524 (23%), Gaps = 94/524 (17%)
Query: 226 DSIEGIYETLKE------CAVISKSAGGIGVSVHNIRATGSYIRGTNGTSNGIVPMLRVF 279
D+ EG + + + +IR G+ I G GT++G +P++ +
Sbjct: 219 DTREGWVLANALLIDLHFAQTNPDRKQKLILDLSDIRPYGAEIHGFGGTASGPMPLISML 278
Query: 280 NDTARYVDQGGGKRKGAFAVYLEPWHADIFEFLNLKKNHGKEEHRARDLFYALWVPDLFM 339
D ++ G R A R AL D
Sbjct: 279 LDVNEVLNNKAGGRLTAVDAADICNLIGKAVVAGN---------VRRSAELALGSNDDQD 329
Query: 340 ERVQTNGQWSLFCPNEASGLADCWGAEFEKLYTHYEREGKAKKVVQAQNLWFEILTSQIE 399
Q L AS + + F + I E
Sbjct: 330 FISMKQDQEKLMHHRWASNNSVAVDSAFSG--------------------YQPIAAGIRE 369
Query: 400 TGTPYMLFKDTCNRKS--NQQNLGTIKSSNLCTEIIEYTSPTETAVCNLASIALPRFVRE 457
G P ++ D I T S CNL +
Sbjct: 370 NGEPGIVNLDLSKNYGRIVDGYQAGIDGDVEGTNPCGEISLANGEPCNLFEVFPLIAEE- 428
Query: 458 KDVPVESHPSRIVGSRGSKNRFFDFEKLAEVTAIVTENLNKIIDVNYYPVETARRSNLRH 517
+ + K + + Y E +R ++
Sbjct: 429 ------------------------QGWDLQEVFALAARYAKRVTFSPYDWEISREIIQKN 464
Query: 518 RPIGIGVQGLADTFILLGMAFESPEAQQLNKDIFETIYYHALKTSSEIAAKEGPYETYHN 577
R IGI + G+ D + + + + +
Sbjct: 465 RRIGISMSGIQDWLLTRLGNRVVTGF-------KDDFDPETHEAIKVPVYDKRAIKMV-- 515
Query: 578 SPVSKGILQPDMWNVIPSDRWDWGVLRDMISKNGVRNSLLVAPMPTASTSQ-ILGNNECF 636
++ + D+ G S+ + + T + G +E
Sbjct: 516 ---------DQLYKAVVKADQDY------SKTLGCNESIKHTTVKPSGTVAKLAGASEGM 560
Query: 637 EPYTSNIYSRRVLSGEFVVVNKHLLHDLTEMGIWSPTIKNKIIYDDGSVQKIPEIPEELK 696
+ +R+ + + LL L G T + + V+ +
Sbjct: 561 HFHYGAYLIQRIRFQD----SDPLLPALKACGYR--TEADIYTENTTCVEFPIKAVGADN 614
Query: 697 MIYKTVWEIKQMTLVDM-AVDRGCYIDQSQSLNIHMDQPNFKKV 739
+ + + A + + D + S I +V
Sbjct: 615 PNFASAGTVSIAEQFATQAFLQTYWSDNAVSCTITFQDSEGDQV 658
>d1peqa1 a.98.1.1 (A:13-174) R1 subunit of ribonucleotide reductase,
N-terminal domain {Salmonella typhimurium [TaxId:
90371]}
Length = 162
Score = 120 bits (303), Expect = 2e-32
Identities = 26/161 (16%), Positives = 50/161 (31%), Gaps = 23/161 (14%)
Query: 72 PDYASLAARIAVSNLHKNTKK------------SFSETIKDMYNHYNERSGLKAPLIADD 119
DY +L A + NL+ F+ ++ + + L+ +
Sbjct: 2 MDYHALNAML---NLYDKAGHIQFDKDQQAIDAFFATHVRPHSVTFASQHERLGTLVREG 58
Query: 120 IYEIIM------KNAACLDSEIIYDRDFDYDYFGFKTLERSYLLKVQ--GKVVERPQHML 171
Y+ + L + G SY LK + +E + +
Sbjct: 59 YYDDAVLARYDRAFVLRLFEHAHASGFRFQTFLGAWKFYTSYTLKTFDGKRYLEHFEDRV 118
Query: 172 MRVSIGIHKDDIDSAIKTYHMMSQRWFTHASPTLFNAGTPR 212
V++ + + D A + M F A+PT N G +
Sbjct: 119 TMVALTLAQGDETLATQLTDEMLSGRFQPATPTFLNCGKQQ 159
>d1m8pa3 c.37.1.15 (A:391-573) ATP sulfurylase C-terminal domain
{Fungus (Penicillium chrysogenum) [TaxId: 5076]}
Length = 183
Score = 28.5 bits (62), Expect = 2.4
Identities = 19/139 (13%), Positives = 38/139 (27%), Gaps = 5/139 (3%)
Query: 658 KHLLHDLTEMGIWSPTIKNKIIYDDGSVQKIPEIPEELKMIYKTVWEIKQMTLVDMAVDR 717
+ L L + G S ++ ++ E+ + + + A
Sbjct: 24 RALQVTLNQQGGRSVSLLLGDTVRHELSSELGFTREDRHTNIQRIAFVATELTRAGAAVI 83
Query: 718 GCYIDQSQSLNIHMDQPNFKKVTSLHFRTWSRGLKTGMY----YLRSRAAADAIKFTVDT 773
+ + + S + L+ + + A IK
Sbjct: 84 -AAPIAPYEESRKFARDAVSQAGSFFLVHVATPLEHCEQSDKRGIYAAARRGEIKGFTGV 142
Query: 774 SVFKEKPEKPELVVDDETK 792
E PEK +LVVD +
Sbjct: 143 DDPYETPEKADLVVDFSKQ 161
Database: scop70_1_75
Posted date: Mar 27, 2010 6:21 PM
Number of letters in database: 2,407,596
Number of sequences in database: 13,730
Lambda K H
0.319 0.134 0.400
Gapped
Lambda K H
0.267 0.0690 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 3,055,469
Number of extensions: 145807
Number of successful extensions: 382
Number of sequences better than 10.0: 1
Number of HSP's gapped: 359
Number of HSP's successfully gapped: 7
Length of query: 811
Length of database: 2,407,596
Length adjustment: 93
Effective length of query: 718
Effective length of database: 1,130,706
Effective search space: 811846908
Effective search space used: 811846908
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 57 (25.8 bits)