BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 003563
(810 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|2FO7|A Chain A, Crystal Structure Of An 8 Repeat Consensus Tpr Superhelix
(Trigonal Crystal Form)
pdb|2HYZ|A Chain A, Crystal Structure Of An 8 Repeat Consensus Tpr Superhelix
(Orthorombic Crystal Form)
Length = 136
Score = 67.0 bits (162), Expect = 4e-11, Method: Compositional matrix adjust.
Identities = 33/120 (27%), Positives = 65/120 (54%)
Query: 47 GNFEQAISLLKEVVRLSPNLPETYNTLGLAHSALGNHKSAFDFYVIAAHLSPKDSALWKQ 106
G++++AI ++ + L P E + LG A+ G++ A ++Y A L P+ + W
Sbjct: 15 GDYDEAIEYYQKALELDPRSAEAWYNLGNAYYKQGDYDEAIEYYQKALELDPRSAEAWYN 74
Query: 107 LLTFAVQKGDTAQAMYYIRQAIRAEPKDISLRIHLASFYVEIGDYEKAAESYEQIQKLFP 166
L ++GD +A+ Y ++A+ +P+ +L + Y + GDY++A E Y++ +L P
Sbjct: 75 LGNAYYKQGDYDEAIEYYQKALELDPRSAEAWYNLGNAYYKQGDYDEAIEYYQKALELDP 134
Score = 60.5 bits (145), Expect = 4e-09, Method: Compositional matrix adjust.
Identities = 34/133 (25%), Positives = 67/133 (50%)
Query: 68 ETYNTLGLAHSALGNHKSAFDFYVIAAHLSPKDSALWKQLLTFAVQKGDTAQAMYYIRQA 127
E + LG A+ G++ A ++Y A L P+ + W L ++GD +A+ Y ++A
Sbjct: 2 EAWYNLGNAYYKQGDYDEAIEYYQKALELDPRSAEAWYNLGNAYYKQGDYDEAIEYYQKA 61
Query: 128 IRAEPKDISLRIHLASFYVEIGDYEKAAESYEQIQKLFPDNVDATKTGAQLFLKCGQTAR 187
+ +P+ +L + Y + GDY++A E Y++ +L P + +A + K G
Sbjct: 62 LELDPRSAEAWYNLGNAYYKQGDYDEAIEYYQKALELDPRSAEAWYNLGNAYYKQGDYDE 121
Query: 188 SIGILEEYLKVHP 200
+I ++ L++ P
Sbjct: 122 AIEYYQKALELDP 134
Score = 52.0 bits (123), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 23/87 (26%), Positives = 47/87 (54%)
Query: 47 GNFEQAISLLKEVVRLSPNLPETYNTLGLAHSALGNHKSAFDFYVIAAHLSPKDSALWKQ 106
G++++AI ++ + L P E + LG A+ G++ A ++Y A L P+ + W
Sbjct: 49 GDYDEAIEYYQKALELDPRSAEAWYNLGNAYYKQGDYDEAIEYYQKALELDPRSAEAWYN 108
Query: 107 LLTFAVQKGDTAQAMYYIRQAIRAEPK 133
L ++GD +A+ Y ++A+ +P+
Sbjct: 109 LGNAYYKQGDYDEAIEYYQKALELDPR 135
Score = 43.1 bits (100), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 25/101 (24%), Positives = 51/101 (50%)
Query: 104 WKQLLTFAVQKGDTAQAMYYIRQAIRAEPKDISLRIHLASFYVEIGDYEKAAESYEQIQK 163
W L ++GD +A+ Y ++A+ +P+ +L + Y + GDY++A E Y++ +
Sbjct: 4 WYNLGNAYYKQGDYDEAIEYYQKALELDPRSAEAWYNLGNAYYKQGDYDEAIEYYQKALE 63
Query: 164 LFPDNVDATKTGAQLFLKCGQTARSIGILEEYLKVHPSDAD 204
L P + +A + K G +I ++ L++ P A+
Sbjct: 64 LDPRSAEAWYNLGNAYYKQGDYDEAIEYYQKALELDPRSAE 104
>pdb|3KD7|A Chain A, Designed Tpr Module (Ctpr390) In Complex With Its
Peptide-Ligand (Hsp90 Peptide)
pdb|3KD7|B Chain B, Designed Tpr Module (Ctpr390) In Complex With Its
Peptide-Ligand (Hsp90 Peptide)
pdb|3KD7|C Chain C, Designed Tpr Module (Ctpr390) In Complex With Its
Peptide-Ligand (Hsp90 Peptide)
pdb|3KD7|D Chain D, Designed Tpr Module (Ctpr390) In Complex With Its
Peptide-Ligand (Hsp90 Peptide)
pdb|3KD7|E Chain E, Designed Tpr Module (Ctpr390) In Complex With Its
Peptide-Ligand (Hsp90 Peptide)
Length = 125
Score = 61.2 bits (147), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 31/110 (28%), Positives = 58/110 (52%)
Query: 65 NLPETYNTLGLAHSALGNHKSAFDFYVIAAHLSPKDSALWKQLLTFAVQKGDTAQAMYYI 124
N E + LG A+ G+++ A ++Y A L P +++ W L ++GD +A+ Y
Sbjct: 7 NSAEAWKNLGNAYYKQGDYQKAIEYYQKALELDPNNASAWYNLGNAYYKQGDYQKAIEYY 66
Query: 125 RQAIRAEPKDISLRIHLASFYVEIGDYEKAAESYEQIQKLFPDNVDATKT 174
++A+ +P + + Y + GDY+KA E Y++ +L P+N A +
Sbjct: 67 QKALELDPNNAKAWYRRGNAYYKQGDYQKAIEDYQKALELDPNNAKAKQN 116
Score = 56.2 bits (134), Expect = 7e-08, Method: Compositional matrix adjust.
Identities = 32/109 (29%), Positives = 60/109 (55%), Gaps = 1/109 (0%)
Query: 96 LSPKDSA-LWKQLLTFAVQKGDTAQAMYYIRQAIRAEPKDISLRIHLASFYVEIGDYEKA 154
+ P +SA WK L ++GD +A+ Y ++A+ +P + S +L + Y + GDY+KA
Sbjct: 3 MDPGNSAEAWKNLGNAYYKQGDYQKAIEYYQKALELDPNNASAWYNLGNAYYKQGDYQKA 62
Query: 155 AESYEQIQKLFPDNVDATKTGAQLFLKCGQTARSIGILEEYLKVHPSDA 203
E Y++ +L P+N A + K G ++I ++ L++ P++A
Sbjct: 63 IEYYQKALELDPNNAKAWYRRGNAYYKQGDYQKAIEDYQKALELDPNNA 111
Score = 48.5 bits (114), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 29/117 (24%), Positives = 59/117 (50%), Gaps = 6/117 (5%)
Query: 31 PGVT----KMLGEASLQYAYGNFEQAISLLKEVVRLSPNLPETYNTLGLAHSALGNHKSA 86
PG + K LG A Y G++++AI ++ + L PN + LG A+ G+++ A
Sbjct: 5 PGNSAEAWKNLGNAY--YKQGDYQKAIEYYQKALELDPNNASAWYNLGNAYYKQGDYQKA 62
Query: 87 FDFYVIAAHLSPKDSALWKQLLTFAVQKGDTAQAMYYIRQAIRAEPKDISLRIHLAS 143
++Y A L P ++ W + ++GD +A+ ++A+ +P + + +L +
Sbjct: 63 IEYYQKALELDPNNAKAWYRRGNAYYKQGDYQKAIEDYQKALELDPNNAKAKQNLGN 119
>pdb|2WQH|A Chain A, Crystal Structure Of Ctpr3y3
Length = 125
Score = 60.5 bits (145), Expect = 4e-09, Method: Compositional matrix adjust.
Identities = 31/110 (28%), Positives = 59/110 (53%)
Query: 65 NLPETYNTLGLAHSALGNHKSAFDFYVIAAHLSPKDSALWKQLLTFAVQKGDTAQAMYYI 124
N E + LG A+ G++ A ++Y A L P ++ W L ++GD +A+ Y
Sbjct: 7 NSAEAWYNLGNAYYKQGDYDEAIEYYQKALELYPNNAEAWYNLGNAYYKQGDYDEAIEYY 66
Query: 125 RQAIRAEPKDISLRIHLASFYVEIGDYEKAAESYEQIQKLFPDNVDATKT 174
++A+ P + +L + Y + GDY++A E Y++ +L+P+N +A +
Sbjct: 67 QKALELYPNNAEAWYNLGNAYYKQGDYDEAIEYYQKALELYPNNAEAKQN 116
Score = 54.3 bits (129), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 29/110 (26%), Positives = 60/110 (54%), Gaps = 1/110 (0%)
Query: 96 LSPKDSA-LWKQLLTFAVQKGDTAQAMYYIRQAIRAEPKDISLRIHLASFYVEIGDYEKA 154
+ P +SA W L ++GD +A+ Y ++A+ P + +L + Y + GDY++A
Sbjct: 3 MDPGNSAEAWYNLGNAYYKQGDYDEAIEYYQKALELYPNNAEAWYNLGNAYYKQGDYDEA 62
Query: 155 AESYEQIQKLFPDNVDATKTGAQLFLKCGQTARSIGILEEYLKVHPSDAD 204
E Y++ +L+P+N +A + K G +I ++ L+++P++A+
Sbjct: 63 IEYYQKALELYPNNAEAWYNLGNAYYKQGDYDEAIEYYQKALELYPNNAE 112
Score = 52.8 bits (125), Expect = 8e-07, Method: Compositional matrix adjust.
Identities = 25/97 (25%), Positives = 51/97 (52%)
Query: 47 GNFEQAISLLKEVVRLSPNLPETYNTLGLAHSALGNHKSAFDFYVIAAHLSPKDSALWKQ 106
G++++AI ++ + L PN E + LG A+ G++ A ++Y A L P ++ W
Sbjct: 23 GDYDEAIEYYQKALELYPNNAEAWYNLGNAYYKQGDYDEAIEYYQKALELYPNNAEAWYN 82
Query: 107 LLTFAVQKGDTAQAMYYIRQAIRAEPKDISLRIHLAS 143
L ++GD +A+ Y ++A+ P + + +L +
Sbjct: 83 LGNAYYKQGDYDEAIEYYQKALELYPNNAEAKQNLGN 119
Score = 29.3 bits (64), Expect = 9.9, Method: Compositional matrix adjust.
Identities = 24/101 (23%), Positives = 40/101 (39%), Gaps = 10/101 (9%)
Query: 651 GHQFTMASHHQDAARCYLEAYKLLPENPLINLCVGSALINLALGFRLQNKHQCLAQGFAF 710
G+ + + +A Y +A +L P N A NL + Q + + +
Sbjct: 16 GNAYYKQGDYDEAIEYYQKALELYPNN-------AEAWYNLGNAYYKQGDYD---EAIEY 65
Query: 711 LYNNLRLCEHSQEALYNIARACHHVGLVSLAASYYEKVLAI 751
L L ++ EA YN+ A + G A YY+K L +
Sbjct: 66 YQKALELYPNNAEAWYNLGNAYYKQGDYDEAIEYYQKALEL 106
>pdb|1NA0|A Chain A, Design Of Stable Alpha-Helical Arrays From An Idealized
Tpr Motif
pdb|1NA0|B Chain B, Design Of Stable Alpha-Helical Arrays From An Idealized
Tpr Motif
Length = 125
Score = 60.1 bits (144), Expect = 4e-09, Method: Compositional matrix adjust.
Identities = 31/110 (28%), Positives = 59/110 (53%)
Query: 65 NLPETYNTLGLAHSALGNHKSAFDFYVIAAHLSPKDSALWKQLLTFAVQKGDTAQAMYYI 124
N E + LG A+ G++ A ++Y A L P ++ W L ++GD +A+ Y
Sbjct: 7 NSAEAWYNLGNAYYKQGDYDEAIEYYQKALELDPNNAEAWYNLGNAYYKQGDYDEAIEYY 66
Query: 125 RQAIRAEPKDISLRIHLASFYVEIGDYEKAAESYEQIQKLFPDNVDATKT 174
++A+ +P + +L + Y + GDY++A E Y++ +L P+N +A +
Sbjct: 67 QKALELDPNNAEAWYNLGNAYYKQGDYDEAIEYYQKALELDPNNAEAKQN 116
Score = 56.2 bits (134), Expect = 7e-08, Method: Compositional matrix adjust.
Identities = 26/100 (26%), Positives = 53/100 (53%)
Query: 44 YAYGNFEQAISLLKEVVRLSPNLPETYNTLGLAHSALGNHKSAFDFYVIAAHLSPKDSAL 103
Y G++++AI ++ + L PN E + LG A+ G++ A ++Y A L P ++
Sbjct: 20 YKQGDYDEAIEYYQKALELDPNNAEAWYNLGNAYYKQGDYDEAIEYYQKALELDPNNAEA 79
Query: 104 WKQLLTFAVQKGDTAQAMYYIRQAIRAEPKDISLRIHLAS 143
W L ++GD +A+ Y ++A+ +P + + +L +
Sbjct: 80 WYNLGNAYYKQGDYDEAIEYYQKALELDPNNAEAKQNLGN 119
Score = 51.6 bits (122), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 29/110 (26%), Positives = 59/110 (53%), Gaps = 1/110 (0%)
Query: 96 LSPKDSA-LWKQLLTFAVQKGDTAQAMYYIRQAIRAEPKDISLRIHLASFYVEIGDYEKA 154
+ P +SA W L ++GD +A+ Y ++A+ +P + +L + Y + GDY++A
Sbjct: 3 MDPGNSAEAWYNLGNAYYKQGDYDEAIEYYQKALELDPNNAEAWYNLGNAYYKQGDYDEA 62
Query: 155 AESYEQIQKLFPDNVDATKTGAQLFLKCGQTARSIGILEEYLKVHPSDAD 204
E Y++ +L P+N +A + K G +I ++ L++ P++A+
Sbjct: 63 IEYYQKALELDPNNAEAWYNLGNAYYKQGDYDEAIEYYQKALELDPNNAE 112
>pdb|2PL2|A Chain A, Crystal Structure Of Ttc0263: A Thermophilic Tpr Protein
In Thermus Thermophilus Hb27
pdb|2PL2|B Chain B, Crystal Structure Of Ttc0263: A Thermophilic Tpr Protein
In Thermus Thermophilus Hb27
Length = 217
Score = 49.7 bits (117), Expect = 7e-06, Method: Compositional matrix adjust.
Identities = 48/178 (26%), Positives = 79/178 (44%), Gaps = 18/178 (10%)
Query: 44 YAYGNFEQAISLLKEVVRLSPNLPE-------TYNTLGLAHSALGNHKSA-------FDF 89
YA G ++ A++L + ++ +P PE T LGL + AL N K+
Sbjct: 16 YALGRYDAALTLFERALKENPQDPEALYWLARTQLKLGLVNPALENGKTLVARTPRYLGG 75
Query: 90 YVIAAHLSPKDSALWKQLLTFAVQKGDTAQAMYYIRQAIRAEPKDISLRIHLASFYVEIG 149
Y++ LS AL++Q KG QA+ ++ A R P+ L + Y +G
Sbjct: 76 YMV---LSEAYVALYRQAEDRERGKGYLEQALSVLKDAERVNPRYAPLHLQRGLVYALLG 132
Query: 150 DYEKAAESYEQIQKLFPDNVDATKTGAQLFLKCGQTARSIGILEEYLKVHPSDADLSV 207
+ +KA S +Q L D + A+L+L G+ ++ + L+ P D DL V
Sbjct: 133 ERDKAEASLKQALAL-EDTPEIRSALAELYLSMGRLDEALAQYAKALEQAPKDLDLRV 189
Score = 35.4 bits (80), Expect = 0.12, Method: Compositional matrix adjust.
Identities = 32/100 (32%), Positives = 51/100 (51%), Gaps = 7/100 (7%)
Query: 47 GNFEQAISLLKEVVRLSPNLPETYNTLGLAHSALGNHKSAFDFY--VIAAHLSPK-DSAL 103
G EQA+S+LK+ R++P + GL ++ LG A +A +P+ SAL
Sbjct: 98 GYLEQALSVLKDAERVNPRYAPLHLQRGLVYALLGERDKAEASLKQALALEDTPEIRSAL 157
Query: 104 WKQLLTFAVQKGDTAQAMYYIRQAIRAEPKDISLRIHLAS 143
+ L ++ + D A A Y +A+ PKD+ LR+ AS
Sbjct: 158 AE--LYLSMGRLDEALAQYA--KALEQAPKDLDLRVRYAS 193
>pdb|1W3B|A Chain A, The Superhelical Tpr Domain Of O-Linked Glcnac Transferase
Reveals Structural Similarities To Importin Alpha.
pdb|1W3B|B Chain B, The Superhelical Tpr Domain Of O-Linked Glcnac Transferase
Reveals Structural Similarities To Importin Alpha
Length = 388
Score = 45.8 bits (107), Expect = 9e-05, Method: Compositional matrix adjust.
Identities = 33/132 (25%), Positives = 58/132 (43%)
Query: 40 ASLQYAYGNFEQAISLLKEVVRLSPNLPETYNTLGLAHSALGNHKSAFDFYVIAAHLSPK 99
A + Y G + AI + + L P+ P+ Y L A G+ A D Y A L P
Sbjct: 244 ACVYYEQGLIDLAIDTYRRAIELQPHFPDAYCNLANALKEKGSVAEAEDCYNTALRLCPT 303
Query: 100 DSALWKQLLTFAVQKGDTAQAMYYIRQAIRAEPKDISLRIHLASFYVEIGDYEKAAESYE 159
+ L ++G+ +A+ R+A+ P+ + +LAS + G ++A Y+
Sbjct: 304 HADSLNNLANIKREQGNIEEAVRLYRKALEVFPEFAAAHSNLASVLQQQGKLQEALMHYK 363
Query: 160 QIQKLFPDNVDA 171
+ ++ P DA
Sbjct: 364 EAIRISPTFADA 375
Score = 45.4 bits (106), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 38/156 (24%), Positives = 67/156 (42%)
Query: 49 FEQAISLLKEVVRLSPNLPETYNTLGLAHSALGNHKSAFDFYVIAAHLSPKDSALWKQLL 108
F++A++ + LSPN + L + G A D Y A L P + L
Sbjct: 219 FDRAVAAYLRALSLSPNHAVVHGNLACVYYEQGLIDLAIDTYRRAIELQPHFPDAYCNLA 278
Query: 109 TFAVQKGDTAQAMYYIRQAIRAEPKDISLRIHLASFYVEIGDYEKAAESYEQIQKLFPDN 168
+KG A+A A+R P +LA+ E G+ E+A Y + ++FP+
Sbjct: 279 NALKEKGSVAEAEDCYNTALRLCPTHADSLNNLANIKREQGNIEEAVRLYRKALEVFPEF 338
Query: 169 VDATKTGAQLFLKCGQTARSIGILEEYLKVHPSDAD 204
A A + + G+ ++ +E +++ P+ AD
Sbjct: 339 AAAHSNLASVLQQQGKLQEALMHYKEAIRISPTFAD 374
Score = 39.3 bits (90), Expect = 0.008, Method: Compositional matrix adjust.
Identities = 33/160 (20%), Positives = 68/160 (42%)
Query: 45 AYGNFEQAISLLKEVVRLSPNLPETYNTLGLAHSALGNHKSAFDFYVIAAHLSPKDSALW 104
A G+ E A+ ++ +P+L + LG ALG + A Y+ A P + W
Sbjct: 113 AAGDMEGAVQAYVSALQYNPDLYCVRSDLGNLLKALGRLEEAKACYLKAIETQPNFAVAW 172
Query: 105 KQLLTFAVQKGDTAQAMYYIRQAIRAEPKDISLRIHLASFYVEIGDYEKAAESYEQIQKL 164
L +G+ A+++ +A+ +P + I+L + E +++A +Y + L
Sbjct: 173 SNLGCVFNAQGEIWLAIHHFEKAVTLDPNFLDAYINLGNVLKEARIFDRAVAAYLRALSL 232
Query: 165 FPDNVDATKTGAQLFLKCGQTARSIGILEEYLKVHPSDAD 204
P++ A ++ + G +I +++ P D
Sbjct: 233 SPNHAVVHGNLACVYYEQGLIDLAIDTYRRAIELQPHFPD 272
Score = 39.3 bits (90), Expect = 0.009, Method: Compositional matrix adjust.
Identities = 43/177 (24%), Positives = 71/177 (40%), Gaps = 21/177 (11%)
Query: 40 ASLQYAYGNFEQAISLLKEVVRLSPNLPETYNTLGLAHSALGNHKSAFDFYVIAAHLSPK 99
A +Y G+FE A ++ R P+ L H + F +A +P
Sbjct: 6 AHREYQAGDFEAAERHCMQLWRQEPDNTGVLLLLSSIHFQCRRLDRSAHFSTLAIKQNPL 65
Query: 100 DSALWKQLLTFAVQKGDTAQAMYYIRQAIRAEPKDISLRIHLASFYVEIGDYEKAAESYE 159
+ + L ++G +A+ + R A+R +P I I+LA+ V GD E A ++Y
Sbjct: 66 LAEAYSNLGNVYKERGQLQEAIEHYRHALRLKPDFIDGYINLAAALVAAGDMEGAVQAYV 125
Query: 160 QIQKLFPDNVDATKTGAQLFLKC-----GQTARSIGILEE----YLKVHPSDADLSV 207
+ PD L C G +++G LEE YLK + + +V
Sbjct: 126 SALQYNPD------------LYCVRSDLGNLLKALGRLEEAKACYLKAIETQPNFAV 170
Score = 33.5 bits (75), Expect = 0.49, Method: Compositional matrix adjust.
Identities = 33/146 (22%), Positives = 58/146 (39%)
Query: 59 VVRLSPNLPETYNTLGLAHSALGNHKSAFDFYVIAAHLSPKDSALWKQLLTFAVQKGDTA 118
++ +P L E Y+ LG + G + A + Y A L P + L V GD
Sbjct: 59 AIKQNPLLAEAYSNLGNVYKERGQLQEAIEHYRHALRLKPDFIDGYINLAAALVAAGDME 118
Query: 119 QAMYYIRQAIRAEPKDISLRIHLASFYVEIGDYEKAAESYEQIQKLFPDNVDATKTGAQL 178
A+ A++ P +R L + +G E+A Y + + P+ A +
Sbjct: 119 GAVQAYVSALQYNPDLYCVRSDLGNLLKALGRLEEAKACYLKAIETQPNFAVAWSNLGCV 178
Query: 179 FLKCGQTARSIGILEEYLKVHPSDAD 204
F G+ +I E+ + + P+ D
Sbjct: 179 FNAQGEIWLAIHHFEKAVTLDPNFLD 204
>pdb|1NA3|A Chain A, Design Of Stable Alpha-Helical Arrays From An Idealized
Tpr Motif
pdb|1NA3|B Chain B, Design Of Stable Alpha-Helical Arrays From An Idealized
Tpr Motif
Length = 91
Score = 44.3 bits (103), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 23/80 (28%), Positives = 45/80 (56%), Gaps = 1/80 (1%)
Query: 96 LSPKDSA-LWKQLLTFAVQKGDTAQAMYYIRQAIRAEPKDISLRIHLASFYVEIGDYEKA 154
+ P +SA W L ++GD +A+ Y ++A+ +P + +L + Y + GDY++A
Sbjct: 3 MDPGNSAEAWYNLGNAYYKQGDYDEAIEYYQKALELDPNNAEAWYNLGNAYYKQGDYDEA 62
Query: 155 AESYEQIQKLFPDNVDATKT 174
E Y++ +L P+N +A +
Sbjct: 63 IEYYQKALELDPNNAEAKQN 82
Score = 41.6 bits (96), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 20/79 (25%), Positives = 40/79 (50%)
Query: 65 NLPETYNTLGLAHSALGNHKSAFDFYVIAAHLSPKDSALWKQLLTFAVQKGDTAQAMYYI 124
N E + LG A+ G++ A ++Y A L P ++ W L ++GD +A+ Y
Sbjct: 7 NSAEAWYNLGNAYYKQGDYDEAIEYYQKALELDPNNAEAWYNLGNAYYKQGDYDEAIEYY 66
Query: 125 RQAIRAEPKDISLRIHLAS 143
++A+ +P + + +L +
Sbjct: 67 QKALELDPNNAEAKQNLGN 85
Score = 41.2 bits (95), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 23/71 (32%), Positives = 38/71 (53%), Gaps = 1/71 (1%)
Query: 44 YAYGNFEQAISLLKEVVRLSPNLPETYNTLGLAHSALGNHKSAFDFYVIAAHLSPKDSAL 103
Y G++++AI ++ + L PN E + LG A+ G++ A ++Y A L P ++
Sbjct: 20 YKQGDYDEAIEYYQKALELDPNNAEAWYNLGNAYYKQGDYDEAIEYYQKALELDPNNAEA 79
Query: 104 WKQLLTFAVQK 114
KQ L A QK
Sbjct: 80 -KQNLGNAKQK 89
Score = 34.3 bits (77), Expect = 0.28, Method: Compositional matrix adjust.
Identities = 18/65 (27%), Positives = 37/65 (56%)
Query: 140 HLASFYVEIGDYEKAAESYEQIQKLFPDNVDATKTGAQLFLKCGQTARSIGILEEYLKVH 199
+L + Y + GDY++A E Y++ +L P+N +A + K G +I ++ L++
Sbjct: 14 NLGNAYYKQGDYDEAIEYYQKALELDPNNAEAWYNLGNAYYKQGDYDEAIEYYQKALELD 73
Query: 200 PSDAD 204
P++A+
Sbjct: 74 PNNAE 78
>pdb|1ZBP|A Chain A, X-Ray Crystal Structure Of Protein Vpa1032 From Vibrio
Parahaemolyticus. Northeast Structural Genomics
Consortium Target Vpr44
Length = 273
Score = 43.9 bits (102), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 25/64 (39%), Positives = 34/64 (53%), Gaps = 4/64 (6%)
Query: 104 WKQLLTFAVQKGDTAQAMYYIRQAIRAEPKDISLRIHLASFYVEIGDYEKAAESYEQIQK 163
WK A+ +G QA+ + +AI+A PKD SLR GD+E+A E Q K
Sbjct: 4 WKN----ALSEGQLQQALELLIEAIKASPKDASLRSSFIELLCIDGDFERADEQLXQSIK 59
Query: 164 LFPD 167
LFP+
Sbjct: 60 LFPE 63
>pdb|3PE3|A Chain A, Structure Of Human O-Glcnac Transferase And Its Complex
With A Peptide Substrate
pdb|3PE3|B Chain B, Structure Of Human O-Glcnac Transferase And Its Complex
With A Peptide Substrate
pdb|3PE3|C Chain C, Structure Of Human O-Glcnac Transferase And Its Complex
With A Peptide Substrate
pdb|3PE3|D Chain D, Structure Of Human O-Glcnac Transferase And Its Complex
With A Peptide Substrate
pdb|3PE4|A Chain A, Structure Of Human O-Glcnac Transferase And Its Complex
With A Peptide Substrate
pdb|3PE4|C Chain C, Structure Of Human O-Glcnac Transferase And Its Complex
With A Peptide Substrate
pdb|3TAX|A Chain A, A Neutral Diphosphate Mimic Crosslinks The Active Site Of
Human O- Glcnac Transferase
pdb|3TAX|C Chain C, A Neutral Diphosphate Mimic Crosslinks The Active Site Of
Human O- Glcnac Transferase
pdb|4AY5|A Chain A, Human O-Glcnac Transferase (Ogt) In Complex With Udp And
Glycopeptide
pdb|4AY5|B Chain B, Human O-Glcnac Transferase (Ogt) In Complex With Udp And
Glycopeptide
pdb|4AY5|C Chain C, Human O-Glcnac Transferase (Ogt) In Complex With Udp And
Glycopeptide
pdb|4AY5|D Chain D, Human O-Glcnac Transferase (Ogt) In Complex With Udp And
Glycopeptide
pdb|4AY6|A Chain A, Human O-Glcnac Transferase (Ogt) In Complex With
Udp-5sglcnac And Substrate Peptide
pdb|4AY6|B Chain B, Human O-Glcnac Transferase (Ogt) In Complex With
Udp-5sglcnac And Substrate Peptide
pdb|4AY6|C Chain C, Human O-Glcnac Transferase (Ogt) In Complex With
Udp-5sglcnac And Substrate Peptide
pdb|4AY6|D Chain D, Human O-Glcnac Transferase (Ogt) In Complex With
Udp-5sglcnac And Substrate Peptide
pdb|4GYW|A Chain A, Crystal Structure Of Human O-Glcnac Transferase In Complex
With Udp And A Glycopeptide
pdb|4GYW|C Chain C, Crystal Structure Of Human O-Glcnac Transferase In Complex
With Udp And A Glycopeptide
pdb|4GYY|A Chain A, Crystal Structure Of Human O-Glcnac Transferase With
Udp-5sglcnac And A Peptide Substrate
pdb|4GYY|C Chain C, Crystal Structure Of Human O-Glcnac Transferase With
Udp-5sglcnac And A Peptide Substrate
pdb|4GZ3|A Chain A, Crystal Structure Of Human O-Glcnac Transferase With Udp
And A Thioglycopeptide
pdb|4GZ3|C Chain C, Crystal Structure Of Human O-Glcnac Transferase With Udp
And A Thioglycopeptide
pdb|4GZ5|A Chain A, Crystal Structure Of Human O-Glcnac Transferase With
Udp-Glcnac
pdb|4GZ5|B Chain B, Crystal Structure Of Human O-Glcnac Transferase With
Udp-Glcnac
pdb|4GZ5|C Chain C, Crystal Structure Of Human O-Glcnac Transferase With
Udp-Glcnac
pdb|4GZ5|D Chain D, Crystal Structure Of Human O-Glcnac Transferase With
Udp-Glcnac
pdb|4GZ6|A Chain A, Crystal Structure Of Human O-Glcnac Transferase With
Udp-5sglcnac
pdb|4GZ6|B Chain B, Crystal Structure Of Human O-Glcnac Transferase With
Udp-5sglcnac
pdb|4GZ6|C Chain C, Crystal Structure Of Human O-Glcnac Transferase With
Udp-5sglcnac
pdb|4GZ6|D Chain D, Crystal Structure Of Human O-Glcnac Transferase With
Udp-5sglcnac
Length = 723
Score = 42.7 bits (99), Expect = 8e-04, Method: Compositional matrix adjust.
Identities = 32/132 (24%), Positives = 57/132 (43%)
Query: 40 ASLQYAYGNFEQAISLLKEVVRLSPNLPETYNTLGLAHSALGNHKSAFDFYVIAAHLSPK 99
A+++ GN E+A+ L ++ + + P ++ L G + A Y A +SP
Sbjct: 16 ANIKREQGNIEEAVRLYRKALEVFPEFAAAHSNLASVLQQQGKLQEALMHYKEAIRISPT 75
Query: 100 DSALWKQLLTFAVQKGDTAQAMYYIRQAIRAEPKDISLRIHLASFYVEIGDYEKAAESYE 159
+ + + + D A+ +AI+ P +LAS + + G+ +A SY
Sbjct: 76 FADAYSNMGNTLKEMQDVQGALQCYTRAIQINPAFADAHSNLASIHKDSGNIPEAIASYR 135
Query: 160 QIQKLFPDNVDA 171
KL PD DA
Sbjct: 136 TALKLKPDFPDA 147
Score = 40.4 bits (93), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 32/141 (22%), Positives = 57/141 (40%)
Query: 64 PNLPETYNTLGLAHSALGNHKSAFDFYVIAAHLSPKDSALWKQLLTFAVQKGDTAQAMYY 123
P ++ N L GN + A Y A + P+ +A L + Q+G +A+ +
Sbjct: 6 PTHADSLNNLANIKREQGNIEEAVRLYRKALEVFPEFAAAHSNLASVLQQQGKLQEALMH 65
Query: 124 IRQAIRAEPKDISLRIHLASFYVEIGDYEKAAESYEQIQKLFPDNVDATKTGAQLFLKCG 183
++AIR P ++ + E+ D + A + Y + ++ P DA A + G
Sbjct: 66 YKEAIRISPTFADAYSNMGNTLKEMQDVQGALQCYTRAIQINPAFADAHSNLASIHKDSG 125
Query: 184 QTARSIGILEEYLKVHPSDAD 204
+I LK+ P D
Sbjct: 126 NIPEAIASYRTALKLKPDFPD 146
>pdb|2J9Q|A Chain A, A Novel Conformation For The Tpr Domain Of Pex5p
pdb|2J9Q|B Chain B, A Novel Conformation For The Tpr Domain Of Pex5p
Length = 328
Score = 41.6 bits (96), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 28/112 (25%), Positives = 48/112 (42%), Gaps = 2/112 (1%)
Query: 49 FEQAISLLKEVVRLSPNL--PETYNTLGLAHSALGNHKSAFDFYVIAAHLSPKDSALWKQ 106
F + L VRL P P+ LG+ + G + A D + A + P D LW +
Sbjct: 157 FLEVKELFLAAVRLDPTSIDPDVQCGLGVLFNLSGEYDKAVDCFTAALSVRPNDYLLWNK 216
Query: 107 LLTFAVQKGDTAQAMYYIRQAIRAEPKDISLRIHLASFYVEIGDYEKAAESY 158
L + +A+ R+A+ +P I R +L + +G + +A E +
Sbjct: 217 LGATLANGNQSEEAVAAYRRALELQPGYIRSRYNLGISCINLGAHREAVEHF 268
>pdb|2C0M|A Chain A, Apo Form Of The Tpr Domain Of The Pex5p Receptor
pdb|2C0M|B Chain B, Apo Form Of The Tpr Domain Of The Pex5p Receptor
pdb|2C0M|C Chain C, Apo Form Of The Tpr Domain Of The Pex5p Receptor
pdb|2C0M|F Chain F, Apo Form Of The Tpr Domain Of The Pex5p Receptor
Length = 319
Score = 41.6 bits (96), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 28/112 (25%), Positives = 48/112 (42%), Gaps = 2/112 (1%)
Query: 49 FEQAISLLKEVVRLSPNL--PETYNTLGLAHSALGNHKSAFDFYVIAAHLSPKDSALWKQ 106
F + L VRL P P+ LG+ + G + A D + A + P D LW +
Sbjct: 148 FLEVKELFLAAVRLDPTSIDPDVQCGLGVLFNLSGEYDKAVDCFTAALSVRPNDYLLWNK 207
Query: 107 LLTFAVQKGDTAQAMYYIRQAIRAEPKDISLRIHLASFYVEIGDYEKAAESY 158
L + +A+ R+A+ +P I R +L + +G + +A E +
Sbjct: 208 LGATLANGNQSEEAVAAYRRALELQPGYIRSRYNLGISCINLGAHREAVEHF 259
>pdb|2C0L|A Chain A, Tpr Domain Of Human Pex5p In Complex With Human Mscp2
Length = 305
Score = 41.6 bits (96), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 28/112 (25%), Positives = 48/112 (42%), Gaps = 2/112 (1%)
Query: 49 FEQAISLLKEVVRLSPNL--PETYNTLGLAHSALGNHKSAFDFYVIAAHLSPKDSALWKQ 106
F + L VRL P P+ LG+ + G + A D + A + P D LW +
Sbjct: 134 FLEVKELFLAAVRLDPTSIDPDVQCGLGVLFNLSGEYDKAVDCFTAALSVRPNDYLLWNK 193
Query: 107 LLTFAVQKGDTAQAMYYIRQAIRAEPKDISLRIHLASFYVEIGDYEKAAESY 158
L + +A+ R+A+ +P I R +L + +G + +A E +
Sbjct: 194 LGATLANGNQSEEAVAAYRRALELQPGYIRSRYNLGISCINLGAHREAVEHF 245
>pdb|3R9A|B Chain B, Human Alanine-Glyoxylate Aminotransferase In Complex With
The Tpr Domain Of Human Pex5p
pdb|3R9A|D Chain D, Human Alanine-Glyoxylate Aminotransferase In Complex With
The Tpr Domain Of Human Pex5p
Length = 328
Score = 41.6 bits (96), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 28/112 (25%), Positives = 48/112 (42%), Gaps = 2/112 (1%)
Query: 49 FEQAISLLKEVVRLSPNL--PETYNTLGLAHSALGNHKSAFDFYVIAAHLSPKDSALWKQ 106
F + L VRL P P+ LG+ + G + A D + A + P D LW +
Sbjct: 157 FLEVKELFLAAVRLDPTSIDPDVQCGLGVLFNLSGEYDKAVDCFTAALSVRPNDYLLWNK 216
Query: 107 LLTFAVQKGDTAQAMYYIRQAIRAEPKDISLRIHLASFYVEIGDYEKAAESY 158
L + +A+ R+A+ +P I R +L + +G + +A E +
Sbjct: 217 LGATLANGNQSEEAVAAYRRALELQPGYIRSRYNLGISCINLGAHREAVEHF 268
>pdb|1FCH|A Chain A, Crystal Structure Of The Pts1 Complexed To The Tpr Region
Of Human Pex5
pdb|1FCH|B Chain B, Crystal Structure Of The Pts1 Complexed To The Tpr Region
Of Human Pex5
Length = 368
Score = 40.8 bits (94), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 28/112 (25%), Positives = 48/112 (42%), Gaps = 2/112 (1%)
Query: 49 FEQAISLLKEVVRLSPNL--PETYNTLGLAHSALGNHKSAFDFYVIAAHLSPKDSALWKQ 106
F + L VRL P P+ LG+ + G + A D + A + P D LW +
Sbjct: 197 FLEVKELFLAAVRLDPTSIDPDVQCGLGVLFNLSGEYDKAVDCFTAALSVRPNDYLLWNK 256
Query: 107 LLTFAVQKGDTAQAMYYIRQAIRAEPKDISLRIHLASFYVEIGDYEKAAESY 158
L + +A+ R+A+ +P I R +L + +G + +A E +
Sbjct: 257 LGATLANGNQSEEAVAAYRRALELQPGYIRSRYNLGISCINLGAHREAVEHF 308
>pdb|2AVP|A Chain A, Crystal Structure Of An 8 Repeat Consensus Tpr Superhelix
Length = 70
Score = 38.5 bits (88), Expect = 0.016, Method: Compositional matrix adjust.
Identities = 18/66 (27%), Positives = 35/66 (53%)
Query: 68 ETYNTLGLAHSALGNHKSAFDFYVIAAHLSPKDSALWKQLLTFAVQKGDTAQAMYYIRQA 127
E + LG A+ G++ A ++Y A L P+ + W L ++GD +A+ Y ++A
Sbjct: 4 EAWYNLGNAYYKQGDYDEAIEYYQKALELDPRSAEAWYNLGNAYYKQGDYDEAIEYYQKA 63
Query: 128 IRAEPK 133
+ +P+
Sbjct: 64 LELDPR 69
Score = 36.6 bits (83), Expect = 0.053, Method: Compositional matrix adjust.
Identities = 15/53 (28%), Positives = 29/53 (54%)
Query: 47 GNFEQAISLLKEVVRLSPNLPETYNTLGLAHSALGNHKSAFDFYVIAAHLSPK 99
G++++AI ++ + L P E + LG A+ G++ A ++Y A L P+
Sbjct: 17 GDYDEAIEYYQKALELDPRSAEAWYNLGNAYYKQGDYDEAIEYYQKALELDPR 69
Score = 35.8 bits (81), Expect = 0.100, Method: Compositional matrix adjust.
Identities = 18/63 (28%), Positives = 35/63 (55%)
Query: 104 WKQLLTFAVQKGDTAQAMYYIRQAIRAEPKDISLRIHLASFYVEIGDYEKAAESYEQIQK 163
W L ++GD +A+ Y ++A+ +P+ +L + Y + GDY++A E Y++ +
Sbjct: 6 WYNLGNAYYKQGDYDEAIEYYQKALELDPRSAEAWYNLGNAYYKQGDYDEAIEYYQKALE 65
Query: 164 LFP 166
L P
Sbjct: 66 LDP 68
>pdb|3CV0|A Chain A, Structure Of Peroxisomal Targeting Signal 1 (Pts1) Binding
Domain Of Trypanosoma Brucei Peroxin 5 (Tbpex5)complexed
To T. Brucei Phosphoglucoisomerase (Pgi) Pts1 Peptide
pdb|3CVL|A Chain A, Structure Of Peroxisomal Targeting Signal 1 (Pts1) Binding
Domain Of Trypanosoma Brucei Peroxin 5 (Tbpex5)complexed
To T. Brucei Phosphofructokinase (Pfk) Pts1 Peptide
pdb|3CVN|A Chain A, Structure Of Peroxisomal Targeting Signal 1 (Pts1) Binding
Domain Of Trypanosoma Brucei Peroxin 5 (Tbpex5)complexed
To T. Brucei Glyceraldehyde-3-Phosphate Dehydrogenase
(Gapdh) Pts1 Peptide
pdb|3CVP|A Chain A, Structure Of Peroxisomal Targeting Signal 1 (Pts1) Binding
Domain Of Trypanosoma Brucei Peroxin 5 (Tbpex5)complexed
To Pts1 Peptide (10-Skl)
Length = 327
Score = 37.4 bits (85), Expect = 0.031, Method: Compositional matrix adjust.
Identities = 24/108 (22%), Positives = 50/108 (46%)
Query: 49 FEQAISLLKEVVRLSPNLPETYNTLGLAHSALGNHKSAFDFYVIAAHLSPKDSALWKQLL 108
+ + +LL + ++PN + + +LG+ ++ N+ SA A L P D+ LW +L
Sbjct: 154 YRECRTLLHAALEMNPNDAQLHASLGVLYNLSNNYDSAAANLRRAVELRPDDAQLWNKLG 213
Query: 109 TFAVQKGDTAQAMYYIRQAIRAEPKDISLRIHLASFYVEIGDYEKAAE 156
+A+ +A+ P + + ++A Y + Y+ AA+
Sbjct: 214 ATLANGNRPQEALDAYNRALDINPGYVRVMYNMAVSYSNMSQYDLAAK 261
>pdb|3CVQ|A Chain A, Structure Of Peroxisomal Targeting Signal 1 (pts1) Binding
Domain Of Trypanosoma Brucei Peroxin 5 (tbpex5)complexed
To Pts1 Peptide (7- Skl)
Length = 327
Score = 37.4 bits (85), Expect = 0.033, Method: Compositional matrix adjust.
Identities = 24/108 (22%), Positives = 50/108 (46%)
Query: 49 FEQAISLLKEVVRLSPNLPETYNTLGLAHSALGNHKSAFDFYVIAAHLSPKDSALWKQLL 108
+ + +LL + ++PN + + +LG+ ++ N+ SA A L P D+ LW +L
Sbjct: 154 YRECRTLLHAALEMNPNDAQLHASLGVLYNLSNNYDSAAANLRRAVELRPDDAQLWNKLG 213
Query: 109 TFAVQKGDTAQAMYYIRQAIRAEPKDISLRIHLASFYVEIGDYEKAAE 156
+A+ +A+ P + + ++A Y + Y+ AA+
Sbjct: 214 ATLANGNRPQEALDAYNRALDINPGYVRVMYNMAVSYSNMSQYDLAAK 261
>pdb|2LNI|A Chain A, Solution Nmr Structure Of Stress-Induced-Phosphoprotein 1
Sti1 From Homo Sapiens, Northeast Structural Genomics
Consortium Target Hr4403e
Length = 133
Score = 35.4 bits (80), Expect = 0.11, Method: Compositional matrix adjust.
Identities = 21/71 (29%), Positives = 38/71 (53%)
Query: 96 LSPKDSALWKQLLTFAVQKGDTAQAMYYIRQAIRAEPKDISLRIHLASFYVEIGDYEKAA 155
++P + + K QKGD QAM + +AI+ PKD L + A+ Y ++ +++ A
Sbjct: 11 MNPDLALMVKNKGNECFQKGDYPQAMKHYTEAIKRNPKDAKLYSNRAACYTKLLEFQLAL 70
Query: 156 ESYEQIQKLFP 166
+ E+ +L P
Sbjct: 71 KDCEECIQLEP 81
>pdb|2XPI|A Chain A, Crystal Structure Of ApcC HETERO-Tetramer Cut9-Hcn1
pdb|2XPI|D Chain D, Crystal Structure Of ApcC HETERO-Tetramer Cut9-Hcn1
Length = 597
Score = 35.0 bits (79), Expect = 0.17, Method: Compositional matrix adjust.
Identities = 45/179 (25%), Positives = 71/179 (39%), Gaps = 9/179 (5%)
Query: 47 GNFEQAISLLKEVVRLSPNLPETYNTLGLAHSALGNHKSAFDFYVIAAHLSPKDSALWKQ 106
G +QAIS RL Y LG+ H LGN A ++ + L D L +
Sbjct: 421 GEHDQAISAYTTAARLFQGTHLPYLFLGMQHMQLGNILLANEYLQSSYALFQYDPLLLNE 480
Query: 107 LLTFAVQKGDTAQAMYYIRQAIRAEPKDISLRIHLASFYVEIGD-------YEKAAESYE 159
L A K D A+ + + A+ K S A+ + +G Y+ A ++
Sbjct: 481 LGVVAFNKSDMQTAINHFQNALLLVKKTQSNEKPWAATWANLGHAYRKLKMYDAAIDALN 540
Query: 160 QIQKLFPDNVDATKTGAQLFLKCGQTARSIGILEEYLKVHPSDADLSVIDLLVAILMEN 218
Q L ++ + A ++L +I L E L + P+ ++ DLL L EN
Sbjct: 541 QGLLLSTNDANVHTAIALVYLHKKIPGLAITHLHESLAISPN--EIMASDLLKRALEEN 597
>pdb|4HOU|A Chain A, Crystal Structure Of N-terminal Human Ifit1
pdb|4HOU|B Chain B, Crystal Structure Of N-terminal Human Ifit1
Length = 273
Score = 34.7 bits (78), Expect = 0.23, Method: Compositional matrix adjust.
Identities = 39/138 (28%), Positives = 61/138 (44%), Gaps = 16/138 (11%)
Query: 31 PGVTKMLGEASLQYAYGNFEQAISLLKEVVRLSPNLPETYNTLGLAHSA---------LG 81
P + G A L+ N+E+A + ++V+ + P PE+ + G A SA
Sbjct: 133 PEIDCEEGWALLKCGGKNYERAKACFEKVLEVDPENPES--SAGYAISAYRLDGFKLATK 190
Query: 82 NHKSAFDFYVI--AAHLSPKDSALWKQLLTFAVQ-KGDTAQAMYYIRQAIRAEPKDISLR 138
NHK F + A L+P D+ K LL +Q +G A+ YI +A+ +
Sbjct: 191 NHKP-FSLLPLRQAVRLNP-DNGYIKVLLALKLQDEGQEAEGEKYIEEALANXSSQTYVF 248
Query: 139 IHLASFYVEIGDYEKAAE 156
+ A FY G +KA E
Sbjct: 249 RYAAKFYRRKGSVDKALE 266
>pdb|3FP2|A Chain A, Crystal Structure Of Tom71 Complexed With Hsp82 C-Terminal
Fragment
pdb|3FP3|A Chain A, Crystal Structure Of Tom71
pdb|3FP4|A Chain A, Crystal Structure Of Tom71 Complexed With Ssa1 C-Terminal
Fragment
Length = 537
Score = 34.7 bits (78), Expect = 0.24, Method: Compositional matrix adjust.
Identities = 24/117 (20%), Positives = 53/117 (45%)
Query: 48 NFEQAISLLKEVVRLSPNLPETYNTLGLAHSALGNHKSAFDFYVIAAHLSPKDSALWKQL 107
N ++ ++ V L+P P TY G + L ++K+A + + A L+P++ + QL
Sbjct: 291 NSQEFFKFFQKAVDLNPEYPPTYYHRGQMYFILQDYKNAKEDFQKAQSLNPENVYPYIQL 350
Query: 108 LTFAVQKGDTAQAMYYIRQAIRAEPKDISLRIHLASFYVEIGDYEKAAESYEQIQKL 164
++G ++ + + P + A + GD++ A + Y+ ++L
Sbjct: 351 ACLLYKQGKFTESEAFFNETKLKFPTLPEVPTFFAEILTDRGDFDTAIKQYDIAKRL 407
Score = 30.0 bits (66), Expect = 5.0, Method: Compositional matrix adjust.
Identities = 23/87 (26%), Positives = 38/87 (43%), Gaps = 1/87 (1%)
Query: 108 LTFAVQKGDTAQAMYYIRQAIRAEPKDISLRIHLASFYVEIGDYEKAAESYEQIQKLFPD 167
LT A K ++ + + ++A+ P+ H Y + DY+ A E +++ Q L P+
Sbjct: 284 LTLA-DKENSQEFFKFFQKAVDLNPEYPPTYYHRGQMYFILQDYKNAKEDFQKAQSLNPE 342
Query: 168 NVDATKTGAQLFLKCGQTARSIGILEE 194
NV A L K G+ S E
Sbjct: 343 NVYPYIQLACLLYKQGKFTESEAFFNE 369
>pdb|4EQF|A Chain A, Trip8b-1a#206-567 Interacting With The Carboxy-Terminal
Seven Residues Of Hcn2
Length = 365
Score = 34.7 bits (78), Expect = 0.24, Method: Compositional matrix adjust.
Identities = 27/130 (20%), Positives = 56/130 (43%), Gaps = 4/130 (3%)
Query: 31 PGVTKMLGEASLQYAYGNFEQAISLLKEVVRLSPNL--PETYNTLGLAHSALGNHKSAFD 88
PG+T+ + ++ + + E L E + ++ P+ LG+ G A D
Sbjct: 177 PGLTRRMSKSPVDSSV--LEGVKELYLEAAHQNGDMIDPDLQTGLGVLFHLSGEFNRAID 234
Query: 89 FYVIAAHLSPKDSALWKQLLTFAVQKGDTAQAMYYIRQAIRAEPKDISLRIHLASFYVEI 148
+ A + P+D +LW +L + +A+ +A+ +P I R +L + +
Sbjct: 235 AFNAALTVRPEDYSLWNRLGATLANGDRSEEAVEAYTRALEIQPGFIRSRYNLGISCINL 294
Query: 149 GDYEKAAESY 158
G Y +A ++
Sbjct: 295 GAYREAVSNF 304
>pdb|3LCA|A Chain A, Structure Of Tom71 Complexed With Hsp70 Ssa1 C Terminal
Tail Indicating Conformational Plasticity
Length = 533
Score = 34.3 bits (77), Expect = 0.25, Method: Compositional matrix adjust.
Identities = 24/117 (20%), Positives = 53/117 (45%)
Query: 48 NFEQAISLLKEVVRLSPNLPETYNTLGLAHSALGNHKSAFDFYVIAAHLSPKDSALWKQL 107
N ++ ++ V L+P P TY G + L ++K+A + + A L+P++ + QL
Sbjct: 287 NSQEFFKFFQKAVDLNPEYPPTYYHRGQMYFILQDYKNAKEDFQKAQSLNPENVYPYIQL 346
Query: 108 LTFAVQKGDTAQAMYYIRQAIRAEPKDISLRIHLASFYVEIGDYEKAAESYEQIQKL 164
++G ++ + + P + A + GD++ A + Y+ ++L
Sbjct: 347 ACLLYKQGKFTESEAFFNETKLKFPTLPEVPTFFAEILTDRGDFDTAIKQYDIAKRL 403
Score = 30.0 bits (66), Expect = 5.3, Method: Compositional matrix adjust.
Identities = 23/87 (26%), Positives = 38/87 (43%), Gaps = 1/87 (1%)
Query: 108 LTFAVQKGDTAQAMYYIRQAIRAEPKDISLRIHLASFYVEIGDYEKAAESYEQIQKLFPD 167
LT A K ++ + + ++A+ P+ H Y + DY+ A E +++ Q L P+
Sbjct: 280 LTLA-DKENSQEFFKFFQKAVDLNPEYPPTYYHRGQMYFILQDYKNAKEDFQKAQSLNPE 338
Query: 168 NVDATKTGAQLFLKCGQTARSIGILEE 194
NV A L K G+ S E
Sbjct: 339 NVYPYIQLACLLYKQGKFTESEAFFNE 365
>pdb|2VYI|A Chain A, Crystal Structure Of The Tpr Domain Of Human Sgt
pdb|2VYI|B Chain B, Crystal Structure Of The Tpr Domain Of Human Sgt
Length = 131
Score = 34.3 bits (77), Expect = 0.27, Method: Compositional matrix adjust.
Identities = 20/65 (30%), Positives = 31/65 (47%), Gaps = 1/65 (1%)
Query: 47 GNFEQAISLLKEVVRLSPNLPETYNTLGLAHSALGNHKSAFDFYVIAAHLSPKDSALWKQ 106
GN+ A+ + + + P + Y +GLA S+L H A +Y A L P D+ +K
Sbjct: 60 GNYAGAVQDCERAICIDPAYSKAYGRMGLALSSLNKHVEAVAYYKKALELDP-DNETYKS 118
Query: 107 LLTFA 111
L A
Sbjct: 119 NLKIA 123
>pdb|3SZ7|A Chain A, Crystal Structure Of The Sgt2 Tpr Domain From Aspergillus
Fumigatus
Length = 164
Score = 33.5 bits (75), Expect = 0.50, Method: Compositional matrix adjust.
Identities = 21/77 (27%), Positives = 36/77 (46%)
Query: 31 PGVTKMLGEASLQYAYGNFEQAISLLKEVVRLSPNLPETYNTLGLAHSALGNHKSAFDFY 90
P K+ E + A + +AI L + + ++P P + A+SA G H+ A +
Sbjct: 9 PESDKLKSEGNAAMARKEYSKAIDLYTQALSIAPANPIYLSNRAAAYSASGQHEKAAEDA 68
Query: 91 VIAAHLSPKDSALWKQL 107
+A + PK S W +L
Sbjct: 69 ELATVVDPKYSKAWSRL 85
>pdb|3VTX|A Chain A, Crystal Structure Of Mama Protein
pdb|3VTX|B Chain B, Crystal Structure Of Mama Protein
pdb|3VTY|A Chain A, Crystal Structure Of Mama
pdb|3VTY|B Chain B, Crystal Structure Of Mama
pdb|3VTY|C Chain C, Crystal Structure Of Mama
pdb|3VTY|D Chain D, Crystal Structure Of Mama
Length = 184
Score = 33.5 bits (75), Expect = 0.53, Method: Composition-based stats.
Identities = 36/145 (24%), Positives = 62/145 (42%), Gaps = 34/145 (23%)
Query: 47 GNFEQAISLLKEVVRLSPNLPETYNTLGLAHSALGNHKSAFDFYVIAAHLSPKDSALWKQ 106
G+F+ AI K+V++ PN ET LG + +G P D+ +
Sbjct: 19 GDFDGAIRAYKKVLKADPNNVETLLKLGKTYMDIG---------------LPNDAI--ES 61
Query: 107 LLTFAVQKGDTAQAMYYI----------RQAIRAEPKDISLRIHLASFYVEI-------G 149
L F V +A+A Y + + AI A + I+L A Y ++ G
Sbjct: 62 LKKFVVLDTTSAEAYYILGSANFMIDEKQAAIDALQRAIALNTVYADAYYKLGLVYDSMG 121
Query: 150 DYEKAAESYEQIQKLFPDNVDATKT 174
+++KA E+YE+ + P + A ++
Sbjct: 122 EHDKAIEAYEKTISIKPGFIRAYQS 146
>pdb|2KC7|A Chain A, Solution Nmr Structure Of Bacteroides Fragilis Protein
Bf1650. Northeast Structural Genomics Consortium Target
Bfr218
Length = 99
Score = 32.7 bits (73), Expect = 0.73, Method: Compositional matrix adjust.
Identities = 19/58 (32%), Positives = 30/58 (51%), Gaps = 1/58 (1%)
Query: 47 GNFEQAISLLKEVVRLSP-NLPETYNTLGLAHSALGNHKSAFDFYVIAAHLSPKDSAL 103
G+ E A+ L+E ++ P E Y +G A+ LG+ + A + Y A L+P AL
Sbjct: 14 GDIENALQALEEFLQTEPVGKDEAYYLMGNAYRKLGDWQKALNNYQSAIELNPDSPAL 71
Score = 29.6 bits (65), Expect = 7.5, Method: Compositional matrix adjust.
Identities = 16/58 (27%), Positives = 34/58 (58%), Gaps = 3/58 (5%)
Query: 112 VQKGDTAQAMYYIRQAIRAEP--KDISLRIHLASFYVEIGDYEKAAESYEQIQKLFPD 167
+ +GD A+ + + ++ EP KD + + + + Y ++GD++KA +Y+ +L PD
Sbjct: 11 INQGDIENALQALEEFLQTEPVGKDEAYYL-MGNAYRKLGDWQKALNNYQSAIELNPD 67
>pdb|3ASD|A Chain A, Mama R50e Mutant
Length = 200
Score = 32.7 bits (73), Expect = 0.74, Method: Composition-based stats.
Identities = 19/88 (21%), Positives = 41/88 (46%)
Query: 113 QKGDTAQAMYYIRQAIRAEPKDISLRIHLASFYVEIGDYEKAAESYEQIQKLFPDNVDAT 172
+ G +QA+ + Q A+ D+ + +HL YV+ G ++ E E+ PDNV
Sbjct: 20 KAGRYSQAVMLLEQVYDADAFDVDVALHLGIAYVKTGAVDRGTELLERSLADAPDNVKVA 79
Query: 173 KTGAQLFLKCGQTARSIGILEEYLKVHP 200
+++ + ++ +L + + +P
Sbjct: 80 TVLGLTYVQVQKYDLAVPLLIKVAEANP 107
>pdb|3AS4|A Chain A, Mama Amb-1 C2221
pdb|3AS5|A Chain A, Mama Amb-1 P212121
pdb|3AS5|B Chain B, Mama Amb-1 P212121
Length = 186
Score = 32.7 bits (73), Expect = 0.78, Method: Composition-based stats.
Identities = 19/88 (21%), Positives = 41/88 (46%)
Query: 113 QKGDTAQAMYYIRQAIRAEPKDISLRIHLASFYVEIGDYEKAAESYEQIQKLFPDNVDAT 172
+ G +QA+ + Q A+ D+ + +HL YV+ G ++ E E+ PDNV
Sbjct: 20 KAGRYSQAVMLLEQVYDADAFDVDVALHLGIAYVKTGAVDRGTELLERSLADAPDNVKVA 79
Query: 173 KTGAQLFLKCGQTARSIGILEEYLKVHP 200
+++ + ++ +L + + +P
Sbjct: 80 TVLGLTYVQVQKYDLAVPLLIKVAEANP 107
>pdb|3ASG|A Chain A, Mama D159k Mutant 2
pdb|3ASG|B Chain B, Mama D159k Mutant 2
pdb|3ASH|A Chain A, Mama D159k Mutant 1
pdb|3ASH|B Chain B, Mama D159k Mutant 1
Length = 186
Score = 32.7 bits (73), Expect = 0.82, Method: Composition-based stats.
Identities = 17/57 (29%), Positives = 29/57 (50%)
Query: 113 QKGDTAQAMYYIRQAIRAEPKDISLRIHLASFYVEIGDYEKAAESYEQIQKLFPDNV 169
+ G +QA+ + Q A+ D+ + +HL YV+ G ++ E E+ PDNV
Sbjct: 20 KAGRYSQAVMLLEQVYDADAFDVDVALHLGIAYVKTGAVDRGTELLERSLADAPDNV 76
>pdb|3CEQ|A Chain A, The Tpr Domain Of Human Kinesin Light Chain 2 (Hklc2)
pdb|3CEQ|B Chain B, The Tpr Domain Of Human Kinesin Light Chain 2 (Hklc2)
Length = 283
Score = 31.6 bits (70), Expect = 2.1, Method: Compositional matrix adjust.
Identities = 40/156 (25%), Positives = 67/156 (42%), Gaps = 25/156 (16%)
Query: 31 PGVTKMLGEASLQYAYGN-FEQAISLLKEVVRLS--------PNLPETYNTLGLAHSALG 81
P V ML +L Y N +++A LL + + + P + T N L + + G
Sbjct: 40 PDVATMLNILALVYRDQNKYKEAAHLLNDALAIREKTLGKDHPAVAATLNNLAVLYGKRG 99
Query: 82 NHKSAFDFYVIAAHLSPK-----DSALWKQLLTFAV---QKGDTAQAMYYIRQAI----- 128
+K A A + K + KQL A+ +G + YY R+A+
Sbjct: 100 KYKEAEPLCKRALEIREKVLGKFHPDVAKQLSNLALLCQNQGKAEEVEYYYRRALEIYAT 159
Query: 129 RAEPKDISL---RIHLASFYVEIGDYEKAAESYEQI 161
R P D ++ + +LAS Y++ G Y+ A Y++I
Sbjct: 160 RLGPDDPNVAKTKNNLASCYLKQGKYQDAETLYKEI 195
>pdb|4GCO|A Chain A, Central Domain Of Stress-Induced Protein-1 (Sti-1) From
C.Elegans
Length = 126
Score = 31.2 bits (69), Expect = 2.4, Method: Compositional matrix adjust.
Identities = 24/110 (21%), Positives = 48/110 (43%)
Query: 62 LSPNLPETYNTLGLAHSALGNHKSAFDFYVIAAHLSPKDSALWKQLLTFAVQKGDTAQAM 121
++P L + G + G++ +A Y A P+++ L+ + + +A+
Sbjct: 8 INPELAQEEKNKGNEYFKKGDYPTAMRHYNEAVKRDPENAILYSNRAACLTKLMEFQRAL 67
Query: 122 YYIRQAIRAEPKDISLRIHLASFYVEIGDYEKAAESYEQIQKLFPDNVDA 171
IR + K I I A+ V + ++ KA +YE ++ P N +A
Sbjct: 68 DDCDTCIRLDSKFIKGYIRKAACLVAMREWSKAQRAYEDALQVDPSNEEA 117
>pdb|3HYM|B Chain B, Insights Into Anaphase Promoting Complex Tpr Subdomain
Assembly From A Cdc26-Apc6 Structure
pdb|3HYM|D Chain D, Insights Into Anaphase Promoting Complex Tpr Subdomain
Assembly From A Cdc26-Apc6 Structure
pdb|3HYM|F Chain F, Insights Into Anaphase Promoting Complex Tpr Subdomain
Assembly From A Cdc26-Apc6 Structure
pdb|3HYM|H Chain H, Insights Into Anaphase Promoting Complex Tpr Subdomain
Assembly From A Cdc26-Apc6 Structure
pdb|3HYM|J Chain J, Insights Into Anaphase Promoting Complex Tpr Subdomain
Assembly From A Cdc26-Apc6 Structure
pdb|3HYM|L Chain L, Insights Into Anaphase Promoting Complex Tpr Subdomain
Assembly From A Cdc26-Apc6 Structure
Length = 330
Score = 31.2 bits (69), Expect = 2.4, Method: Compositional matrix adjust.
Identities = 15/53 (28%), Positives = 28/53 (52%)
Query: 49 FEQAISLLKEVVRLSPNLPETYNTLGLAHSALGNHKSAFDFYVIAAHLSPKDS 101
+ +A+ ++ + L P TY+ +G HS GN ++A D++ A L D+
Sbjct: 252 YAEALDYHRQALVLIPQNASTYSAIGYIHSLXGNFENAVDYFHTALGLRRDDT 304
>pdb|3EDT|B Chain B, Crystal Structure Of The Mutated S328n Hklc2 Tpr Domain
pdb|3EDT|D Chain D, Crystal Structure Of The Mutated S328n Hklc2 Tpr Domain
pdb|3EDT|F Chain F, Crystal Structure Of The Mutated S328n Hklc2 Tpr Domain
pdb|3EDT|H Chain H, Crystal Structure Of The Mutated S328n Hklc2 Tpr Domain
Length = 283
Score = 31.2 bits (69), Expect = 2.5, Method: Compositional matrix adjust.
Identities = 40/156 (25%), Positives = 67/156 (42%), Gaps = 25/156 (16%)
Query: 31 PGVTKMLGEASLQYAYGN-FEQAISLLKEVVRLS--------PNLPETYNTLGLAHSALG 81
P V ML +L Y N +++A LL + + + P + T N L + + G
Sbjct: 40 PDVATMLNILALVYRDQNKYKEAAHLLNDALAIREKTLGKDHPAVAATLNNLAVLYGKRG 99
Query: 82 NHKSAFDFYVIAAHLSPK-----DSALWKQLLTFAV---QKGDTAQAMYYIRQAI----- 128
+K A A + K + KQL A+ +G + YY R+A+
Sbjct: 100 KYKEAEPLCKRALEIREKVLGKFHPDVAKQLNNLALLCQNQGKAEEVEYYYRRALEIYAT 159
Query: 129 RAEPKDISL---RIHLASFYVEIGDYEKAAESYEQI 161
R P D ++ + +LAS Y++ G Y+ A Y++I
Sbjct: 160 RLGPDDPNVAKTKNNLASCYLKQGKYQDAETLYKEI 195
>pdb|3AS8|A Chain A, Mama Msr-1 P41212
pdb|3ASF|A Chain A, Mama Msr-1 C2
pdb|3ASF|B Chain B, Mama Msr-1 C2
Length = 186
Score = 30.8 bits (68), Expect = 3.1, Method: Composition-based stats.
Identities = 17/88 (19%), Positives = 41/88 (46%)
Query: 113 QKGDTAQAMYYIRQAIRAEPKDISLRIHLASFYVEIGDYEKAAESYEQIQKLFPDNVDAT 172
+ G ++A+ + Q A+ D+ + +HL YV+ G ++ E E+ PDN+
Sbjct: 20 KAGRYSEAVVMLEQVYDADAFDVEVALHLGIAYVKTGAVDRGTELLERSIADAPDNIKVA 79
Query: 173 KTGAQLFLKCGQTARSIGILEEYLKVHP 200
+++ + ++ +L + + +P
Sbjct: 80 TVLGLTYVQVQKYDLAVPLLVKVAEANP 107
>pdb|2KCK|A Chain A, Nmr Solution Structure Of The Northeast Structural
Genomics Consortium (Nesg) Target Mrr121a
Length = 112
Score = 30.8 bits (68), Expect = 3.2, Method: Compositional matrix adjust.
Identities = 16/52 (30%), Positives = 27/52 (51%)
Query: 39 EASLQYAYGNFEQAISLLKEVVRLSPNLPETYNTLGLAHSALGNHKSAFDFY 90
E LQY GN+ ++I L ++ ++L P + + G A L ++ A D Y
Sbjct: 12 EGVLQYDAGNYTESIDLFEKAIQLDPEESKYWLMKGKALYNLERYEEAVDCY 63
>pdb|3FWV|A Chain A, Crystal Structure Of A Redesigned Tpr Protein, T-Mod(Vmy),
In Complex With Meevf Peptide
pdb|3FWV|B Chain B, Crystal Structure Of A Redesigned Tpr Protein, T-Mod(Vmy),
In Complex With Meevf Peptide
Length = 128
Score = 30.4 bits (67), Expect = 3.7, Method: Compositional matrix adjust.
Identities = 17/77 (22%), Positives = 38/77 (49%), Gaps = 9/77 (11%)
Query: 32 GVTKMLGEASLQYAYGNFEQAISLLKEVVRLSPNLPETYNTLGLAHSALGN-------HK 84
+T ++ +A++ + G++ + L ++ + + E Y + A++ +GN +K
Sbjct: 37 NMTYIVNQAAVYFEKGDYNKCRELCEKAIEVGRENREDYRMIAYAYARIGNSYFKEEKYK 96
Query: 85 SAFDFY--VIAAHLSPK 99
A FY +A H +PK
Sbjct: 97 DAIHFYNKSLAEHRTPK 113
Score = 29.3 bits (64), Expect = 8.8, Method: Compositional matrix adjust.
Identities = 20/81 (24%), Positives = 41/81 (50%)
Query: 105 KQLLTFAVQKGDTAQAMYYIRQAIRAEPKDISLRIHLASFYVEIGDYEKAAESYEQIQKL 164
K+L A +K D A+ + +A +P +++ ++ A+ Y E GDY K E E+ ++
Sbjct: 8 KELGNDAYKKKDFDTALKHYDKAKELDPTNMTYIVNQAAVYFEKGDYNKCRELCEKAIEV 67
Query: 165 FPDNVDATKTGAQLFLKCGQT 185
+N + + A + + G +
Sbjct: 68 GRENREDYRMIAYAYARIGNS 88
>pdb|3URZ|A Chain A, Crystal Structure Of A Hypothetical Protein (Bacova_03105)
From Bacteroides Ovatus Atcc 8483 At 2.19 A Resolution
pdb|3URZ|B Chain B, Crystal Structure Of A Hypothetical Protein (Bacova_03105)
From Bacteroides Ovatus Atcc 8483 At 2.19 A Resolution
Length = 208
Score = 30.0 bits (66), Expect = 5.1, Method: Compositional matrix adjust.
Identities = 30/113 (26%), Positives = 53/113 (46%), Gaps = 16/113 (14%)
Query: 106 QLLTFAVQKGDTAQAMYYIRQAI-----RAEP---------KDIS--LRIHLASFYVEIG 149
Q ++ A++ G QA+ Y RQ I R E +IS L LA Y +
Sbjct: 9 QKVSAAIEAGQNGQAVSYFRQTIALNIDRTEXYYWTNVDKNSEISSKLATELALAYKKNR 68
Query: 150 DYEKAAESYEQIQKLFPDNVDATKTGAQLFLKCGQTARSIGILEEYLKVHPSD 202
+Y+KA Y+++ + P+NVD + A+ + GQ ++ E+ L++ +
Sbjct: 69 NYDKAYLFYKELLQKAPNNVDXLEACAEXQVCRGQEKDALRXYEKILQLEADN 121
>pdb|3E0E|A Chain A, Crystal Structure Of A Domain Of Replication Protein A
From Methanococcus Maripaludis. Northeast Structural
Genomics Targe Mrr110b
Length = 97
Score = 30.0 bits (66), Expect = 5.3, Method: Composition-based stats.
Identities = 11/25 (44%), Positives = 16/25 (64%)
Query: 103 LWKQLLTFAVQKGDTAQAMYYIRQA 127
LW +L F V+KGD A+ Y++Q
Sbjct: 55 LWNELADFEVKKGDIAEVSGYVKQG 79
>pdb|2K5V|A Chain A, Solution Nmr Structure Of The Second Ob-Fold Domain Of
Replication Protein A From Methanococcus Maripaludis.
Northeast Structural Genomics Target Mrr110b
Length = 104
Score = 30.0 bits (66), Expect = 5.3, Method: Composition-based stats.
Identities = 11/25 (44%), Positives = 16/25 (64%)
Query: 103 LWKQLLTFAVQKGDTAQAMYYIRQA 127
LW +L F V+KGD A+ Y++Q
Sbjct: 55 LWNELADFEVKKGDIAEVSGYVKQG 79
>pdb|3QKY|A Chain A, Crystal Structure Of Rhodothermus Marinus Bamd
Length = 261
Score = 29.6 bits (65), Expect = 7.3, Method: Compositional matrix adjust.
Identities = 21/74 (28%), Positives = 37/74 (50%)
Query: 692 ALGFRLQNKHQCLAQGFAFLYNNLRLCEHSQEALYNIARACHHVGLVSLAASYYEKVLAI 751
A+ F Q K+ + F ++ R E + +A + +ARA + LAAS YE+ + I
Sbjct: 22 AMEFYNQGKYDRAIEYFKAVFTYGRTHEWAADAQFYLARAYYQNKEYLLAASEYERFIQI 81
Query: 752 KEKDYPIPKHNDKR 765
+ D +P+ +R
Sbjct: 82 YQIDPRVPQAEYER 95
>pdb|2Y4T|A Chain A, Crystal Structure Of The Human Co-Chaperone P58(Ipk)
pdb|2Y4T|B Chain B, Crystal Structure Of The Human Co-Chaperone P58(Ipk)
pdb|2Y4T|C Chain C, Crystal Structure Of The Human Co-Chaperone P58(Ipk)
Length = 450
Score = 29.6 bits (65), Expect = 7.9, Method: Compositional matrix adjust.
Identities = 54/258 (20%), Positives = 100/258 (38%), Gaps = 31/258 (12%)
Query: 44 YAYGNFEQAISLLKEVVRLSPNLPETYNTLGLAHSALGNHKSAFDFYVIAAHLSPKDSAL 103
+ G++ AI+ L +++ + E G + A A+ L ++
Sbjct: 154 FGSGDYTAAIAFLDKILEVCVWDAELRELRAECFIKEGEPRKAISDLKAASKLKNDNTEA 213
Query: 104 WKQLLTFAVQKGDTAQAMYYIRQAIR------------AEPKDISLRIHLASFYVEIGDY 151
+ ++ T Q GD ++ +R+ ++ + K ++ I A + G Y
Sbjct: 214 FYKISTLYYQLGDHELSLSEVRECLKLDQDHKRCFAHYKQVKKLNKLIESAEELIRDGRY 273
Query: 152 EKAAESYEQIQKLFPD----NVDATKTGAQLFLKCGQTARSIGILEEYLKVHPSDADLSV 207
A YE + K P V + + F K + +I + E L++ P + + ++
Sbjct: 274 TDATSKYESVMKTEPSIAEYTVRSKERICHCFSKDEKPVEAIRVCSEVLQMEPDNVN-AL 332
Query: 208 IDLLVAILMEN------NAYEKTLQHIEHAQIVRFSGKELPLKLKVKAGICYLR-LG--- 257
D A L+E YE +H E+ Q +R ++ LK Y + LG
Sbjct: 333 KDRAEAYLIEEMYDEAIQDYETAQEHNENDQQIREGLEKAQRLLKQSQKRDYYKILGVKR 392
Query: 258 NMEKAEILFA----DLQW 271
N +K EI+ A LQW
Sbjct: 393 NAKKQEIIKAYRKLALQW 410
>pdb|1ELR|A Chain A, Crystal Structure Of The Tpr2a Domain Of Hop In Complex
With The Hsp90 Peptide Meevd
Length = 131
Score = 29.3 bits (64), Expect = 9.2, Method: Compositional matrix adjust.
Identities = 20/81 (24%), Positives = 41/81 (50%)
Query: 105 KQLLTFAVQKGDTAQAMYYIRQAIRAEPKDISLRIHLASFYVEIGDYEKAAESYEQIQKL 164
K+L A +K D A+ + +A +P +++ + A+ Y E GDY K E E+ ++
Sbjct: 8 KELGNDAYKKKDFDTALKHYDKAKELDPTNMTYITNQAAVYFEKGDYNKCRELCEKAIEV 67
Query: 165 FPDNVDATKTGAQLFLKCGQT 185
+N + + A+ + + G +
Sbjct: 68 GRENREDYRQIAKAYARIGNS 88
>pdb|3ESK|A Chain A, Structure Of Hop Tpr2a Domain In Complex With The
Non-Cognate Hsc70 Peptide Ligand
Length = 129
Score = 29.3 bits (64), Expect = 10.0, Method: Compositional matrix adjust.
Identities = 20/81 (24%), Positives = 41/81 (50%)
Query: 105 KQLLTFAVQKGDTAQAMYYIRQAIRAEPKDISLRIHLASFYVEIGDYEKAAESYEQIQKL 164
K+L A +K D A+ + +A +P +++ + A+ Y E GDY K E E+ ++
Sbjct: 8 KELGNDAYKKKDFDTALKHYDKAKELDPTNMTYITNQAAVYFEKGDYNKCRELCEKAIEV 67
Query: 165 FPDNVDATKTGAQLFLKCGQT 185
+N + + A+ + + G +
Sbjct: 68 GRENREDYRQIAKAYARIGNS 88
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.321 0.136 0.403
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 21,702,157
Number of Sequences: 62578
Number of extensions: 840077
Number of successful extensions: 2120
Number of sequences better than 100.0: 55
Number of HSP's better than 100.0 without gapping: 42
Number of HSP's successfully gapped in prelim test: 13
Number of HSP's that attempted gapping in prelim test: 1928
Number of HSP's gapped (non-prelim): 181
length of query: 810
length of database: 14,973,337
effective HSP length: 107
effective length of query: 703
effective length of database: 8,277,491
effective search space: 5819076173
effective search space used: 5819076173
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 56 (26.2 bits)