Query 003563
Match_columns 810
No_of_seqs 1342 out of 2993
Neff 10.8
Searched_HMMs 46136
Date Fri Mar 29 01:48:40 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/003563.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/003563hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG2076 RNA polymerase III tra 100.0 3.1E-89 6.6E-94 713.1 69.6 738 12-810 118-895 (895)
2 TIGR02917 PEP_TPR_lipo putativ 100.0 2.1E-46 4.5E-51 450.9 68.9 638 33-808 261-898 (899)
3 TIGR02917 PEP_TPR_lipo putativ 100.0 4.5E-45 9.8E-50 439.3 68.1 664 30-808 122-797 (899)
4 PRK11447 cellulose synthase su 100.0 1E-40 2.3E-45 399.6 66.1 657 30-808 25-738 (1157)
5 KOG4626 O-linked N-acetylgluco 100.0 4.7E-43 1E-47 350.1 35.7 509 34-673 49-565 (966)
6 KOG4626 O-linked N-acetylgluco 100.0 4.7E-42 1E-46 343.0 27.8 379 27-425 110-488 (966)
7 KOG2002 TPR-containing nuclear 100.0 9.9E-38 2.1E-42 329.4 51.9 609 48-806 109-741 (1018)
8 PRK11447 cellulose synthase su 100.0 2.2E-37 4.7E-42 371.0 61.7 620 30-750 59-739 (1157)
9 PRK09782 bacteriophage N4 rece 100.0 4.3E-34 9.4E-39 325.6 64.7 621 32-754 43-709 (987)
10 KOG2002 TPR-containing nuclear 100.0 8.7E-34 1.9E-38 299.7 53.0 612 35-752 130-799 (1018)
11 PRK09782 bacteriophage N4 rece 100.0 1.5E-30 3.3E-35 296.6 56.9 600 30-754 75-743 (987)
12 TIGR00990 3a0801s09 mitochondr 100.0 3.8E-32 8.3E-37 306.4 43.4 369 34-423 128-572 (615)
13 TIGR00990 3a0801s09 mitochondr 100.0 7.1E-31 1.5E-35 296.1 47.8 445 67-680 127-578 (615)
14 PRK15174 Vi polysaccharide exp 100.0 5.3E-30 1.1E-34 287.2 42.3 338 36-381 45-386 (656)
15 PRK15174 Vi polysaccharide exp 100.0 2.9E-28 6.2E-33 273.3 40.2 361 45-425 17-384 (656)
16 PRK10049 pgaA outer membrane p 100.0 3.9E-27 8.4E-32 270.2 45.6 423 41-611 23-466 (765)
17 PRK10049 pgaA outer membrane p 100.0 6E-27 1.3E-31 268.6 44.5 377 30-425 46-459 (765)
18 KOG0547 Translocase of outer m 100.0 4.4E-27 9.6E-32 230.5 29.4 338 33-378 115-568 (606)
19 PRK14574 hmsH outer membrane p 100.0 2E-24 4.4E-29 241.7 49.7 462 31-610 32-522 (822)
20 KOG2076 RNA polymerase III tra 100.0 1.7E-23 3.8E-28 220.9 50.6 338 68-420 140-510 (895)
21 PLN03077 Protein ECB2; Provisi 99.9 1.2E-22 2.6E-27 238.8 57.1 618 36-805 54-715 (857)
22 KOG0624 dsRNA-activated protei 99.9 1.2E-24 2.6E-29 203.9 30.9 321 30-380 35-374 (504)
23 KOG0547 Translocase of outer m 99.9 5.4E-25 1.2E-29 216.0 28.5 335 68-422 116-566 (606)
24 KOG0495 HAT repeat protein [RN 99.9 2.5E-21 5.4E-26 196.5 55.5 609 46-808 264-878 (913)
25 KOG1126 DNA-binding cell divis 99.9 5.6E-25 1.2E-29 225.4 26.1 304 35-346 321-624 (638)
26 PLN03077 Protein ECB2; Provisi 99.9 1.8E-21 3.9E-26 228.9 56.7 625 64-808 48-684 (857)
27 PRK11788 tetratricopeptide rep 99.9 2.6E-23 5.7E-28 223.3 37.0 280 28-349 30-318 (389)
28 PRK11788 tetratricopeptide rep 99.9 4.1E-23 8.8E-28 221.8 35.5 277 67-381 35-316 (389)
29 KOG1126 DNA-binding cell divis 99.9 7.5E-24 1.6E-28 217.2 25.3 306 68-381 318-625 (638)
30 KOG1155 Anaphase-promoting com 99.9 1.1E-21 2.5E-26 191.7 37.0 379 33-431 164-545 (559)
31 KOG0495 HAT repeat protein [RN 99.9 5.7E-19 1.2E-23 179.6 57.4 598 29-754 281-883 (913)
32 PRK14574 hmsH outer membrane p 99.9 3E-21 6.4E-26 216.4 45.2 478 59-679 26-519 (822)
33 PLN03081 pentatricopeptide (PP 99.9 2.2E-21 4.7E-26 222.6 44.2 462 70-639 90-557 (697)
34 PLN03218 maturation of RBCL 1; 99.9 8.6E-20 1.9E-24 210.5 57.0 369 37-423 374-749 (1060)
35 KOG1155 Anaphase-promoting com 99.9 2.2E-21 4.8E-26 189.7 36.8 330 66-422 163-495 (559)
36 KOG0548 Molecular co-chaperone 99.9 4.4E-22 9.6E-27 199.2 32.2 356 35-406 4-473 (539)
37 PLN03218 maturation of RBCL 1; 99.9 2.5E-19 5.4E-24 206.7 56.2 366 41-425 414-786 (1060)
38 PLN03081 pentatricopeptide (PP 99.9 2E-20 4.4E-25 214.6 47.3 467 101-673 87-557 (697)
39 KOG2003 TPR repeat-containing 99.9 1.6E-21 3.4E-26 189.4 28.7 500 29-620 145-708 (840)
40 KOG2003 TPR repeat-containing 99.9 1.2E-21 2.7E-26 190.2 27.9 371 30-418 198-617 (840)
41 KOG4162 Predicted calmodulin-b 99.9 1.2E-18 2.7E-23 181.4 45.4 416 206-755 324-787 (799)
42 KOG1156 N-terminal acetyltrans 99.9 1.5E-17 3.2E-22 170.1 52.1 379 29-429 3-441 (700)
43 KOG1127 TPR repeat-containing 99.9 5.2E-19 1.1E-23 188.0 42.3 355 49-420 474-877 (1238)
44 KOG0624 dsRNA-activated protei 99.9 6.7E-21 1.4E-25 179.0 24.8 379 63-512 34-431 (504)
45 KOG1173 Anaphase-promoting com 99.9 3.6E-20 7.9E-25 186.1 30.9 294 29-357 240-533 (611)
46 KOG1173 Anaphase-promoting com 99.9 2.3E-20 5.1E-25 187.5 29.4 341 34-381 142-523 (611)
47 KOG1127 TPR repeat-containing 99.9 4.4E-18 9.5E-23 181.1 44.7 343 35-381 494-884 (1238)
48 TIGR00540 hemY_coli hemY prote 99.9 1.6E-19 3.4E-24 192.6 34.0 303 32-341 83-398 (409)
49 PF13429 TPR_15: Tetratricopep 99.9 1.5E-21 3.2E-26 198.1 13.2 263 105-375 12-276 (280)
50 KOG0548 Molecular co-chaperone 99.9 7.8E-19 1.7E-23 176.1 29.5 343 70-429 5-462 (539)
51 KOG1174 Anaphase-promoting com 99.9 4.5E-18 9.8E-23 164.1 33.5 378 28-426 38-504 (564)
52 PRK10747 putative protoheme IX 99.9 2.2E-18 4.8E-23 182.6 34.6 297 32-341 83-389 (398)
53 PF13429 TPR_15: Tetratricopep 99.9 4.9E-21 1.1E-25 194.2 13.6 259 38-340 13-275 (280)
54 PRK12370 invasion protein regu 99.9 7.6E-19 1.7E-23 194.4 32.1 251 82-342 276-535 (553)
55 KOG4162 Predicted calmodulin-b 99.8 5.9E-18 1.3E-22 176.4 35.8 373 30-422 322-783 (799)
56 TIGR00540 hemY_coli hemY prote 99.8 1.4E-18 3E-23 185.3 32.3 305 69-375 86-398 (409)
57 KOG1174 Anaphase-promoting com 99.8 4.5E-18 9.9E-23 164.0 31.4 312 37-357 202-515 (564)
58 COG3063 PilF Tfp pilus assembl 99.8 2.9E-18 6.3E-23 153.7 26.5 205 30-236 32-238 (250)
59 PRK12370 invasion protein regu 99.8 2.9E-18 6.2E-23 189.8 32.9 264 32-305 257-533 (553)
60 TIGR02521 type_IV_pilW type IV 99.8 3.1E-18 6.8E-23 169.9 29.6 205 28-234 26-232 (234)
61 PRK11189 lipoprotein NlpI; Pro 99.8 1.9E-18 4.1E-23 175.0 28.0 238 46-290 39-283 (296)
62 KOG1129 TPR repeat-containing 99.8 2.4E-19 5.2E-24 167.5 18.5 274 75-356 187-472 (478)
63 PRK10747 putative protoheme IX 99.8 1.4E-17 3.1E-22 176.4 32.0 298 69-377 86-391 (398)
64 KOG1129 TPR repeat-containing 99.8 1.1E-18 2.4E-23 163.2 18.8 280 33-320 181-470 (478)
65 KOG1125 TPR repeat-containing 99.8 1.9E-18 4.2E-23 174.8 20.1 257 36-298 288-562 (579)
66 KOG1915 Cell cycle control pro 99.8 1.2E-14 2.5E-19 143.1 45.4 467 59-616 65-550 (677)
67 COG3063 PilF Tfp pilus assembl 99.8 9.8E-17 2.1E-21 144.0 25.1 209 136-350 36-244 (250)
68 PRK11189 lipoprotein NlpI; Pro 99.8 1.5E-16 3.1E-21 161.3 29.4 242 81-362 40-286 (296)
69 COG2956 Predicted N-acetylgluc 99.8 1.1E-15 2.4E-20 143.6 30.8 268 35-311 37-314 (389)
70 KOG1125 TPR repeat-containing 99.8 5.3E-17 1.2E-21 164.5 22.5 262 105-370 289-565 (579)
71 KOG2376 Signal recognition par 99.8 1.7E-14 3.6E-19 146.4 39.8 367 34-420 13-403 (652)
72 KOG0550 Molecular chaperone (D 99.8 2.8E-17 6E-22 159.1 18.6 294 31-354 47-361 (486)
73 TIGR02521 type_IV_pilW type IV 99.8 2.8E-16 6.1E-21 155.9 26.8 200 66-271 30-231 (234)
74 KOG1156 N-terminal acetyltrans 99.8 2.7E-14 5.9E-19 146.5 40.2 272 68-344 8-285 (700)
75 KOG3785 Uncharacterized conser 99.7 4.1E-15 9E-20 140.9 27.8 361 42-419 31-454 (557)
76 COG2956 Predicted N-acetylgluc 99.7 1.3E-14 2.7E-19 136.5 30.7 270 71-347 39-316 (389)
77 cd05804 StaR_like StaR_like; a 99.7 7.1E-15 1.5E-19 155.7 33.3 313 63-378 2-338 (355)
78 TIGR03302 OM_YfiO outer membra 99.7 5.6E-16 1.2E-20 153.1 23.1 209 6-234 9-232 (235)
79 PLN02789 farnesyltranstransfer 99.7 4.7E-15 1E-19 149.2 28.6 221 29-255 32-267 (320)
80 KOG1840 Kinesin light chain [C 99.7 1.9E-15 4.1E-20 158.3 25.4 251 165-422 195-479 (508)
81 cd05804 StaR_like StaR_like; a 99.7 4.6E-14 1E-18 149.5 33.9 311 30-343 3-337 (355)
82 KOG1915 Cell cycle control pro 99.7 1.6E-12 3.4E-17 128.4 40.8 479 89-694 61-556 (677)
83 PLN02789 farnesyltranstransfer 99.7 1.4E-14 3.1E-19 145.8 26.9 221 46-290 33-267 (320)
84 KOG0550 Molecular chaperone (D 99.7 1.2E-15 2.5E-20 148.0 18.0 287 69-379 51-353 (486)
85 KOG1840 Kinesin light chain [C 99.7 1.2E-14 2.7E-19 152.3 27.0 244 98-341 196-478 (508)
86 KOG3785 Uncharacterized conser 99.6 1.7E-13 3.7E-18 130.2 26.6 365 37-422 61-490 (557)
87 COG3071 HemY Uncharacterized e 99.6 1.5E-12 3.2E-17 126.9 33.3 298 33-342 84-390 (400)
88 KOG2047 mRNA splicing factor [ 99.6 3.8E-11 8.3E-16 123.3 44.0 577 50-805 43-682 (835)
89 PF12569 NARP1: NMDA receptor- 99.6 5.1E-13 1.1E-17 142.3 30.8 140 278-423 194-335 (517)
90 TIGR03302 OM_YfiO outer membra 99.6 1.7E-13 3.7E-18 135.4 22.5 192 63-274 29-234 (235)
91 PRK15359 type III secretion sy 99.6 3.5E-14 7.6E-19 126.4 15.5 126 53-181 13-138 (144)
92 PF12569 NARP1: NMDA receptor- 99.6 2.8E-11 6.1E-16 129.1 39.5 303 34-344 5-336 (517)
93 KOG2376 Signal recognition par 99.6 8.6E-11 1.9E-15 120.0 39.0 379 30-422 43-446 (652)
94 COG3071 HemY Uncharacterized e 99.6 2.8E-11 6E-16 118.2 32.3 297 72-375 89-389 (400)
95 COG5010 TadD Flp pilus assembl 99.5 2.9E-12 6.2E-17 118.5 23.1 181 48-231 48-228 (257)
96 KOG4340 Uncharacterized conser 99.5 2.8E-11 6.1E-16 112.7 28.7 313 43-372 20-335 (459)
97 PRK15359 type III secretion sy 99.5 2.8E-13 6.1E-18 120.6 14.9 125 87-216 13-137 (144)
98 PRK10370 formate-dependent nit 99.5 1.5E-12 3.3E-17 122.5 20.6 154 40-204 23-179 (198)
99 KOG2047 mRNA splicing factor [ 99.5 7.8E-10 1.7E-14 113.9 40.2 537 49-674 84-688 (835)
100 PRK10370 formate-dependent nit 99.5 1.1E-12 2.5E-17 123.3 17.8 126 46-171 52-180 (198)
101 PRK14720 transcript cleavage f 99.5 1E-11 2.2E-16 138.1 26.1 225 30-289 28-268 (906)
102 PRK04841 transcriptional regul 99.5 1.2E-10 2.7E-15 139.5 37.2 377 39-422 347-760 (903)
103 PRK14720 transcript cleavage f 99.5 1.6E-11 3.5E-16 136.5 26.6 264 62-380 26-310 (906)
104 COG5010 TadD Flp pilus assembl 99.5 1.2E-11 2.5E-16 114.6 21.1 178 86-270 52-229 (257)
105 KOG1130 Predicted G-alpha GTPa 99.4 4.2E-12 9.1E-17 123.2 16.6 319 33-365 17-373 (639)
106 KOG1130 Predicted G-alpha GTPa 99.4 4.2E-12 9.1E-17 123.2 15.8 282 36-331 58-373 (639)
107 KOG4340 Uncharacterized conser 99.4 1.4E-10 3E-15 108.1 24.7 368 30-422 41-443 (459)
108 PRK04841 transcriptional regul 99.4 4.3E-10 9.2E-15 134.9 35.9 344 36-380 377-764 (903)
109 PRK15179 Vi polysaccharide bio 99.4 1.7E-11 3.6E-16 135.9 21.8 152 52-203 71-222 (694)
110 TIGR02552 LcrH_SycD type III s 99.4 7.2E-12 1.6E-16 111.7 15.5 117 54-170 4-120 (135)
111 KOG3060 Uncharacterized conser 99.4 1.5E-10 3.4E-15 105.8 23.4 166 67-234 52-220 (289)
112 KOG3060 Uncharacterized conser 99.4 9.6E-11 2.1E-15 107.1 21.7 176 29-204 47-226 (289)
113 PRK15179 Vi polysaccharide bio 99.4 7.5E-11 1.6E-15 130.8 24.4 149 86-236 71-219 (694)
114 KOG0553 TPR repeat-containing 99.4 7.9E-12 1.7E-16 117.8 14.0 120 33-152 81-200 (304)
115 TIGR02552 LcrH_SycD type III s 99.4 2.7E-11 5.8E-16 108.0 16.4 117 88-204 4-120 (135)
116 PRK10866 outer membrane biogen 99.4 2.7E-10 5.8E-15 110.8 24.2 201 7-231 13-238 (243)
117 KOG1128 Uncharacterized conser 99.3 4.2E-11 9.2E-16 125.3 18.3 223 28-271 393-615 (777)
118 PRK15363 pathogenicity island 99.3 5.7E-11 1.2E-15 102.8 15.0 106 61-166 28-134 (157)
119 PRK15363 pathogenicity island 99.3 7.4E-11 1.6E-15 102.1 15.5 113 93-205 26-139 (157)
120 COG4783 Putative Zn-dependent 99.3 8.2E-10 1.8E-14 111.2 24.0 153 64-235 303-455 (484)
121 KOG1128 Uncharacterized conser 99.3 1.1E-09 2.4E-14 115.0 25.2 294 64-379 395-704 (777)
122 KOG0553 TPR repeat-containing 99.3 8.5E-11 1.9E-15 111.0 13.2 116 70-185 84-199 (304)
123 COG4783 Putative Zn-dependent 99.2 4E-09 8.6E-14 106.3 24.7 153 98-273 303-455 (484)
124 PF04733 Coatomer_E: Coatomer 99.2 8.2E-11 1.8E-15 117.3 12.6 255 111-380 11-269 (290)
125 PLN03088 SGT1, suppressor of 99.2 2.6E-10 5.5E-15 118.4 16.4 114 35-148 4-117 (356)
126 PF04733 Coatomer_E: Coatomer 99.2 2.4E-10 5.3E-15 113.9 13.1 255 40-313 8-270 (290)
127 PRK10866 outer membrane biogen 99.1 1.6E-08 3.4E-13 98.5 23.2 186 65-270 30-239 (243)
128 PF13525 YfiO: Outer membrane 99.1 7.3E-09 1.6E-13 98.5 19.6 176 32-224 4-197 (203)
129 PLN03088 SGT1, suppressor of 99.1 1.8E-09 3.9E-14 112.1 16.4 113 70-182 5-117 (356)
130 COG4235 Cytochrome c biogenesi 99.1 3E-09 6.5E-14 101.7 16.0 119 50-168 139-260 (287)
131 KOG3617 WD40 and TPR repeat-co 99.1 4.2E-06 9.2E-11 89.2 40.4 209 43-269 738-993 (1416)
132 PF13525 YfiO: Outer membrane 99.1 1.2E-08 2.6E-13 97.1 19.2 179 66-264 4-199 (203)
133 KOG2053 Mitochondrial inherita 99.1 9E-06 2E-10 88.2 42.3 135 41-176 17-151 (932)
134 KOG1941 Acetylcholine receptor 99.0 1.2E-07 2.6E-12 91.3 23.8 308 35-372 8-356 (518)
135 PF09976 TPR_21: Tetratricopep 99.0 1.5E-08 3.3E-13 90.8 16.9 130 32-162 10-145 (145)
136 COG4235 Cytochrome c biogenesi 99.0 1.5E-08 3.3E-13 96.9 17.2 113 91-203 146-261 (287)
137 TIGR02795 tol_pal_ybgF tol-pal 99.0 6.5E-09 1.4E-13 90.3 13.9 102 35-136 4-111 (119)
138 PF14938 SNAP: Soluble NSF att 99.0 3.9E-08 8.5E-13 99.1 21.0 203 74-305 42-264 (282)
139 TIGR02795 tol_pal_ybgF tol-pal 99.0 9.1E-09 2E-13 89.3 14.4 104 68-171 3-112 (119)
140 KOG2053 Mitochondrial inherita 99.0 9.4E-06 2E-10 88.1 39.2 381 28-422 38-536 (932)
141 COG4785 NlpI Lipoprotein NlpI, 99.0 2.5E-08 5.3E-13 89.1 16.1 200 66-274 64-268 (297)
142 PRK10153 DNA-binding transcrip 99.0 2.3E-08 5.1E-13 107.9 19.3 120 84-204 359-488 (517)
143 CHL00033 ycf3 photosystem I as 99.0 1.4E-08 2.9E-13 94.0 14.4 107 43-149 9-120 (168)
144 KOG1941 Acetylcholine receptor 98.9 4.5E-07 9.8E-12 87.5 23.4 240 102-341 84-359 (518)
145 PRK10153 DNA-binding transcrip 98.9 5.1E-08 1.1E-12 105.3 19.0 144 26-170 332-488 (517)
146 PRK11906 transcriptional regul 98.9 1.2E-07 2.5E-12 96.7 20.1 159 35-193 257-431 (458)
147 PRK02603 photosystem I assembl 98.9 4.9E-08 1.1E-12 90.6 16.3 118 65-202 33-153 (172)
148 COG4785 NlpI Lipoprotein NlpI, 98.9 1.7E-07 3.8E-12 83.8 18.6 195 102-307 66-266 (297)
149 PF13414 TPR_11: TPR repeat; P 98.9 4.7E-09 1E-13 80.5 7.8 66 67-132 3-69 (69)
150 cd00189 TPR Tetratricopeptide 98.9 1.6E-08 3.4E-13 83.9 11.6 94 71-164 4-97 (100)
151 PRK15331 chaperone protein Sic 98.9 2.5E-08 5.4E-13 86.9 12.8 102 62-163 32-133 (165)
152 PF13414 TPR_11: TPR repeat; P 98.9 7.6E-09 1.6E-13 79.3 8.2 67 100-166 2-69 (69)
153 PF14938 SNAP: Soluble NSF att 98.9 1.9E-07 4.1E-12 94.2 20.4 202 176-378 42-268 (282)
154 PRK15331 chaperone protein Sic 98.9 3.5E-08 7.6E-13 86.0 12.9 106 30-136 34-139 (165)
155 PRK11906 transcriptional regul 98.9 2.7E-07 5.9E-12 94.1 21.0 172 59-231 240-433 (458)
156 PF13432 TPR_16: Tetratricopep 98.9 6.6E-09 1.4E-13 78.5 7.2 64 38-101 2-65 (65)
157 PF12895 Apc3: Anaphase-promot 98.9 5.5E-09 1.2E-13 83.6 7.1 81 46-127 2-84 (84)
158 cd00189 TPR Tetratricopeptide 98.9 2.7E-08 5.8E-13 82.5 11.7 99 35-133 2-100 (100)
159 COG4105 ComL DNA uptake lipopr 98.9 1E-06 2.2E-11 82.7 22.8 104 32-135 33-150 (254)
160 COG3898 Uncharacterized membra 98.9 4.6E-06 1E-10 81.6 27.9 293 35-342 86-392 (531)
161 CHL00033 ycf3 photosystem I as 98.9 4.5E-08 9.8E-13 90.5 14.1 123 81-203 13-154 (168)
162 PRK02603 photosystem I assembl 98.9 8.9E-08 1.9E-12 88.8 15.6 119 30-168 32-153 (172)
163 PF09976 TPR_21: Tetratricopep 98.9 1.4E-07 3E-12 84.6 16.4 115 80-195 24-144 (145)
164 KOG3081 Vesicle coat complex C 98.9 1.3E-06 2.8E-11 81.3 22.4 253 111-380 18-275 (299)
165 PRK10803 tol-pal system protei 98.8 1.2E-07 2.5E-12 92.9 15.8 106 32-137 141-253 (263)
166 PF12895 Apc3: Anaphase-promot 98.8 1.1E-08 2.3E-13 81.9 6.7 80 80-160 2-83 (84)
167 KOG1070 rRNA processing protei 98.8 2E-06 4.3E-11 97.0 26.3 218 85-308 1442-1664(1710)
168 PF13432 TPR_16: Tetratricopep 98.8 2E-08 4.4E-13 75.8 7.8 62 73-134 3-64 (65)
169 KOG3081 Vesicle coat complex C 98.8 2.5E-06 5.4E-11 79.4 22.5 256 40-313 15-276 (299)
170 KOG1070 rRNA processing protei 98.8 1E-06 2.3E-11 99.2 23.5 223 149-378 1438-1665(1710)
171 KOG2300 Uncharacterized conser 98.8 0.00014 3.1E-09 73.5 35.9 192 211-408 329-540 (629)
172 KOG0543 FKBP-type peptidyl-pro 98.8 2E-07 4.4E-12 92.5 15.8 99 102-200 258-357 (397)
173 KOG0543 FKBP-type peptidyl-pro 98.8 1.6E-07 3.4E-12 93.3 14.3 95 137-233 259-354 (397)
174 COG0457 NrfG FOG: TPR repeat [ 98.8 2E-05 4.4E-10 78.3 30.6 223 46-274 36-267 (291)
175 PRK10803 tol-pal system protei 98.7 4.1E-07 8.9E-12 89.1 16.5 104 100-203 141-251 (263)
176 KOG3617 WD40 and TPR repeat-co 98.7 9.2E-06 2E-10 86.7 27.0 297 39-373 806-1171(1416)
177 KOG2471 TPR repeat-containing 98.7 5.2E-06 1.1E-10 83.5 23.5 336 37-374 210-682 (696)
178 COG0457 NrfG FOG: TPR repeat [ 98.7 6.8E-05 1.5E-09 74.4 32.8 221 80-305 36-263 (291)
179 COG3898 Uncharacterized membra 98.7 0.00011 2.5E-09 72.2 31.7 293 72-376 89-392 (531)
180 PF09295 ChAPs: ChAPs (Chs5p-A 98.7 5.6E-07 1.2E-11 92.7 16.1 153 35-195 140-294 (395)
181 KOG2300 Uncharacterized conser 98.7 0.00039 8.5E-09 70.5 34.9 122 533-686 405-530 (629)
182 PF09295 ChAPs: ChAPs (Chs5p-A 98.7 6.3E-07 1.4E-11 92.3 16.2 122 105-231 173-294 (395)
183 KOG1914 mRNA cleavage and poly 98.7 0.00018 3.9E-09 74.0 32.8 372 28-416 15-495 (656)
184 KOG4648 Uncharacterized conser 98.7 2.3E-08 4.9E-13 95.4 4.9 100 73-172 103-202 (536)
185 PF12688 TPR_5: Tetratrico pep 98.7 8.1E-07 1.8E-11 74.9 13.7 95 68-162 2-102 (120)
186 KOG4234 TPR repeat-containing 98.7 5.8E-07 1.2E-11 79.4 12.9 106 73-178 101-211 (271)
187 PF14559 TPR_19: Tetratricopep 98.6 9E-08 1.9E-12 73.1 7.0 66 44-109 2-67 (68)
188 COG1729 Uncharacterized protei 98.6 8.8E-07 1.9E-11 84.0 14.9 108 34-141 142-255 (262)
189 COG4700 Uncharacterized protei 98.6 8.4E-06 1.8E-10 71.4 17.9 153 78-234 67-222 (251)
190 KOG4648 Uncharacterized conser 98.6 3.3E-08 7.1E-13 94.3 3.5 101 104-204 100-200 (536)
191 COG4105 ComL DNA uptake lipopr 98.6 1.7E-05 3.8E-10 74.5 21.1 104 66-169 33-150 (254)
192 KOG3616 Selective LIM binding 98.6 0.0012 2.6E-08 70.2 36.5 106 291-419 745-850 (1636)
193 KOG2796 Uncharacterized conser 98.6 2.7E-05 6E-10 72.2 21.4 150 245-403 179-333 (366)
194 PF12688 TPR_5: Tetratrico pep 98.5 2.2E-06 4.7E-11 72.3 13.2 95 102-196 2-102 (120)
195 PF14559 TPR_19: Tetratricopep 98.5 2.5E-07 5.3E-12 70.6 6.8 61 114-174 4-64 (68)
196 PF13512 TPR_18: Tetratricopep 98.5 3.4E-06 7.4E-11 72.1 13.9 85 32-116 9-99 (142)
197 KOG3616 Selective LIM binding 98.5 0.00095 2.1E-08 70.9 34.2 234 104-374 664-909 (1636)
198 COG4700 Uncharacterized protei 98.5 2.2E-05 4.8E-10 68.9 18.8 153 112-270 67-220 (251)
199 PF13371 TPR_9: Tetratricopept 98.5 8.8E-07 1.9E-11 68.7 8.8 63 110-172 4-66 (73)
200 PF13371 TPR_9: Tetratricopept 98.5 8.7E-07 1.9E-11 68.7 8.4 63 42-104 4-66 (73)
201 COG1729 Uncharacterized protei 98.4 6.4E-06 1.4E-10 78.3 14.9 102 103-204 143-250 (262)
202 KOG2471 TPR repeat-containing 98.4 4.7E-05 1E-09 76.9 21.5 303 33-340 240-682 (696)
203 KOG4234 TPR repeat-containing 98.4 5.4E-06 1.2E-10 73.5 11.7 101 104-204 98-203 (271)
204 PF13512 TPR_18: Tetratricopep 98.4 1.1E-05 2.4E-10 69.0 13.2 85 66-150 9-99 (142)
205 PF06552 TOM20_plant: Plant sp 98.3 4E-06 8.7E-11 73.9 9.5 96 660-755 7-113 (186)
206 KOG4507 Uncharacterized conser 98.3 5.4E-05 1.2E-09 78.1 18.6 108 250-358 614-721 (886)
207 PLN03098 LPA1 LOW PSII ACCUMUL 98.2 1.8E-05 3.8E-10 81.0 13.7 69 62-130 70-141 (453)
208 KOG1586 Protein required for f 98.2 0.00066 1.4E-08 62.3 21.6 187 28-215 29-241 (288)
209 KOG4555 TPR repeat-containing 98.2 7.6E-05 1.6E-09 61.3 14.1 98 35-132 45-146 (175)
210 KOG0985 Vesicle coat protein c 98.2 0.0012 2.7E-08 72.8 26.9 282 39-370 1054-1335(1666)
211 KOG4642 Chaperone-dependent E3 98.2 2.1E-05 4.6E-10 72.0 11.7 103 28-130 5-107 (284)
212 PLN03098 LPA1 LOW PSII ACCUMUL 98.2 4E-05 8.8E-10 78.5 14.9 69 96-164 70-141 (453)
213 KOG2610 Uncharacterized conser 98.2 0.00038 8.2E-09 67.2 20.2 118 43-160 113-234 (491)
214 KOG1586 Protein required for f 98.1 0.0023 5E-08 58.8 22.4 174 46-234 27-224 (288)
215 COG3118 Thioredoxin domain-con 98.1 0.00032 6.9E-09 67.3 17.8 161 30-192 131-295 (304)
216 KOG2796 Uncharacterized conser 98.1 0.00052 1.1E-08 64.0 18.5 163 39-201 128-318 (366)
217 KOG1258 mRNA processing protei 98.1 0.025 5.3E-07 60.1 35.9 363 50-422 62-470 (577)
218 KOG4555 TPR repeat-containing 98.1 0.00012 2.6E-09 60.2 12.5 95 140-234 48-144 (175)
219 PF06552 TOM20_plant: Plant sp 98.1 4E-05 8.7E-10 67.7 10.6 98 49-173 7-118 (186)
220 PF13424 TPR_12: Tetratricopep 98.1 2.4E-06 5.2E-11 67.2 2.8 71 722-810 5-75 (78)
221 KOG1914 mRNA cleavage and poly 98.0 0.031 6.8E-07 58.2 32.9 342 30-378 50-503 (656)
222 PF13424 TPR_12: Tetratricopep 98.0 7.5E-06 1.6E-10 64.4 4.1 27 68-94 6-32 (78)
223 PF10345 Cohesin_load: Cohesin 98.0 0.0073 1.6E-07 68.3 29.4 138 648-799 305-467 (608)
224 PF00515 TPR_1: Tetratricopept 98.0 6.6E-06 1.4E-10 52.3 2.9 32 723-754 2-33 (34)
225 KOG1258 mRNA processing protei 98.0 0.04 8.6E-07 58.6 35.0 316 83-423 61-396 (577)
226 PF13428 TPR_14: Tetratricopep 98.0 1.9E-05 4.1E-10 53.5 5.2 43 313-355 1-43 (44)
227 KOG1585 Protein required for f 97.9 0.0049 1.1E-07 57.2 21.1 196 176-372 38-252 (308)
228 PF13428 TPR_14: Tetratricopep 97.9 3E-05 6.4E-10 52.6 5.3 41 68-108 2-42 (44)
229 PF05843 Suf: Suppressor of fo 97.9 0.00029 6.2E-09 70.8 14.4 134 103-236 3-138 (280)
230 PF04184 ST7: ST7 protein; In 97.9 0.0012 2.6E-08 67.9 18.4 196 139-351 172-384 (539)
231 PF05843 Suf: Suppressor of fo 97.9 0.00027 6E-09 70.9 13.9 134 69-202 3-140 (280)
232 KOG0376 Serine-threonine phosp 97.8 3.4E-05 7.3E-10 78.6 6.4 108 37-144 8-115 (476)
233 PF10300 DUF3808: Protein of u 97.8 0.02 4.2E-07 62.1 27.9 180 191-378 179-378 (468)
234 KOG1550 Extracellular protein 97.8 0.0094 2E-07 66.2 26.1 177 48-234 227-426 (552)
235 KOG1585 Protein required for f 97.8 0.0063 1.4E-07 56.5 19.8 49 182-230 123-175 (308)
236 KOG4642 Chaperone-dependent E3 97.8 0.00026 5.6E-09 65.1 10.9 93 106-198 15-107 (284)
237 PF04184 ST7: ST7 protein; In 97.8 0.0068 1.5E-07 62.6 21.6 121 109-231 176-321 (539)
238 KOG2610 Uncharacterized conser 97.8 0.0017 3.7E-08 62.9 16.3 164 250-422 110-276 (491)
239 PF13431 TPR_17: Tetratricopep 97.8 3.4E-05 7.3E-10 48.5 3.4 34 335-368 1-34 (34)
240 KOG0985 Vesicle coat protein c 97.7 0.034 7.4E-07 62.0 27.0 298 35-370 1062-1377(1666)
241 KOG2041 WD40 repeat protein [G 97.7 0.099 2.1E-06 56.1 29.3 249 83-374 679-937 (1189)
242 COG2909 MalT ATP-dependent tra 97.7 0.11 2.3E-06 58.0 30.8 302 67-377 347-689 (894)
243 KOG0545 Aryl-hydrocarbon recep 97.7 0.00083 1.8E-08 62.0 12.6 113 32-168 177-297 (329)
244 COG3118 Thioredoxin domain-con 97.7 0.0033 7.2E-08 60.5 17.2 152 67-219 134-286 (304)
245 PF07719 TPR_2: Tetratricopept 97.7 4.7E-05 1E-09 48.3 3.3 33 722-754 1-33 (34)
246 KOG1550 Extracellular protein 97.6 0.016 3.5E-07 64.4 24.8 277 83-379 228-541 (552)
247 KOG4507 Uncharacterized conser 97.6 0.0027 5.7E-08 66.1 16.4 97 285-381 614-710 (886)
248 PF13431 TPR_17: Tetratricopep 97.6 6.6E-05 1.4E-09 47.2 3.2 32 56-87 2-33 (34)
249 PF02259 FAT: FAT domain; Int 97.6 0.045 9.9E-07 57.7 26.7 292 40-345 5-341 (352)
250 PF13181 TPR_8: Tetratricopept 97.6 7.1E-05 1.5E-09 47.5 3.2 32 723-754 2-33 (34)
251 PF10345 Cohesin_load: Cohesin 97.6 0.23 5.1E-06 56.3 38.2 313 49-362 37-464 (608)
252 PF13281 DUF4071: Domain of un 97.5 0.033 7.1E-07 57.0 23.2 168 104-274 144-336 (374)
253 KOG0376 Serine-threonine phosp 97.5 0.0002 4.4E-09 73.1 6.4 106 73-178 10-115 (476)
254 PF13281 DUF4071: Domain of un 97.5 0.0037 8E-08 63.7 15.1 176 242-422 140-334 (374)
255 COG5107 RNA14 Pre-mRNA 3'-end 97.4 0.18 3.9E-06 51.5 26.0 372 27-417 36-526 (660)
256 KOG0545 Aryl-hydrocarbon recep 97.4 0.003 6.6E-08 58.4 12.4 103 102-204 179-299 (329)
257 PF08631 SPO22: Meiosis protei 97.4 0.14 3E-06 51.6 25.7 64 137-200 86-152 (278)
258 KOG0530 Protein farnesyltransf 97.4 0.087 1.9E-06 49.8 21.7 187 29-217 38-233 (318)
259 PF00515 TPR_1: Tetratricopept 97.4 0.0003 6.4E-09 44.6 4.2 34 313-346 1-34 (34)
260 COG2976 Uncharacterized protei 97.4 0.0053 1.2E-07 55.2 13.4 94 71-165 93-189 (207)
261 KOG2041 WD40 repeat protein [G 97.4 0.064 1.4E-06 57.4 23.0 190 47-268 677-877 (1189)
262 PF07079 DUF1347: Protein of u 97.4 0.23 5E-06 50.9 34.9 130 35-164 8-157 (549)
263 PF07719 TPR_2: Tetratricopept 97.4 0.00048 1E-08 43.6 4.9 34 313-346 1-34 (34)
264 PF13176 TPR_7: Tetratricopept 97.3 0.0002 4.3E-09 45.9 2.7 31 724-754 1-31 (36)
265 COG2909 MalT ATP-dependent tra 97.3 0.48 1.1E-05 53.1 31.0 294 37-339 351-685 (894)
266 PRK11619 lytic murein transgly 97.2 0.56 1.2E-05 52.9 32.8 321 33-375 33-374 (644)
267 PF03704 BTAD: Bacterial trans 97.2 0.0086 1.9E-07 53.7 13.4 61 103-163 64-124 (146)
268 KOG0551 Hsp90 co-chaperone CNS 97.2 0.0024 5.2E-08 61.9 10.0 108 272-379 75-185 (390)
269 PF10300 DUF3808: Protein of u 97.2 0.015 3.4E-07 62.9 17.1 182 155-343 177-377 (468)
270 KOG0551 Hsp90 co-chaperone CNS 97.2 0.0081 1.8E-07 58.5 13.0 100 33-132 81-184 (390)
271 KOG0890 Protein kinase of the 97.2 0.4 8.6E-06 59.4 29.6 325 38-380 1388-1788(2382)
272 PF03704 BTAD: Bacterial trans 97.2 0.014 2.9E-07 52.4 14.0 97 33-129 6-124 (146)
273 PF13174 TPR_6: Tetratricopept 97.2 0.00053 1.1E-08 43.0 3.4 32 723-754 1-32 (33)
274 KOG1308 Hsp70-interacting prot 97.1 0.00081 1.8E-08 65.5 5.7 87 79-165 126-212 (377)
275 PF02259 FAT: FAT domain; Int 97.1 0.06 1.3E-06 56.8 20.7 278 73-360 4-305 (352)
276 COG4649 Uncharacterized protei 97.0 0.092 2E-06 46.3 16.8 124 182-305 71-194 (221)
277 PF08631 SPO22: Meiosis protei 97.0 0.45 9.7E-06 47.9 27.4 124 43-166 3-152 (278)
278 PF08424 NRDE-2: NRDE-2, neces 96.9 0.08 1.7E-06 54.4 18.9 159 54-234 6-183 (321)
279 KOG2396 HAT (Half-A-TPR) repea 96.9 0.65 1.4E-05 48.4 28.9 65 43-107 115-180 (568)
280 COG2976 Uncharacterized protei 96.9 0.044 9.6E-07 49.5 14.5 97 248-346 94-192 (207)
281 PF08424 NRDE-2: NRDE-2, neces 96.8 0.093 2E-06 53.9 18.4 134 151-307 47-183 (321)
282 KOG0530 Protein farnesyltransf 96.8 0.4 8.7E-06 45.5 20.2 186 46-254 39-232 (318)
283 PF13181 TPR_8: Tetratricopept 96.8 0.0027 5.8E-08 40.1 4.5 33 314-346 2-34 (34)
284 PRK13184 pknD serine/threonine 96.8 1.7 3.7E-05 50.8 35.1 370 41-420 483-923 (932)
285 KOG0890 Protein kinase of the 96.8 1 2.2E-05 56.1 28.2 134 221-357 1645-1799(2382)
286 COG4649 Uncharacterized protei 96.7 0.2 4.2E-06 44.3 15.8 141 215-358 68-211 (221)
287 PF04910 Tcf25: Transcriptiona 96.6 0.11 2.4E-06 53.9 17.2 167 59-235 32-223 (360)
288 COG0790 FOG: TPR repeat, SEL1 96.6 1 2.2E-05 45.9 25.1 167 42-219 50-236 (292)
289 COG5107 RNA14 Pre-mRNA 3'-end 96.6 1.1 2.4E-05 46.0 28.8 215 158-379 291-534 (660)
290 COG0790 FOG: TPR repeat, SEL1 96.5 1.2 2.5E-05 45.5 24.5 167 76-257 50-236 (292)
291 KOG3824 Huntingtin interacting 96.5 0.011 2.3E-07 56.8 7.9 71 74-144 123-193 (472)
292 PF09613 HrpB1_HrpK: Bacterial 96.5 0.059 1.3E-06 47.5 11.6 87 32-118 9-95 (160)
293 KOG1308 Hsp70-interacting prot 96.4 0.0036 7.7E-08 61.2 4.4 92 109-200 122-213 (377)
294 KOG1464 COP9 signalosome, subu 96.4 0.4 8.7E-06 45.5 17.4 191 44-234 38-260 (440)
295 PF07079 DUF1347: Protein of u 96.4 1.4 3.1E-05 45.4 36.6 130 69-198 8-157 (549)
296 COG5159 RPN6 26S proteasome re 96.3 1.2 2.6E-05 42.9 20.0 54 37-90 7-68 (421)
297 PF13174 TPR_6: Tetratricopept 96.2 0.009 2E-07 37.2 4.2 33 314-346 1-33 (33)
298 PF04910 Tcf25: Transcriptiona 96.2 0.2 4.3E-06 52.1 16.0 174 160-346 31-226 (360)
299 PRK11619 lytic murein transgly 96.1 3.4 7.5E-05 46.8 28.6 269 55-341 84-374 (644)
300 PF04781 DUF627: Protein of un 96.1 0.073 1.6E-06 43.4 9.5 103 39-164 2-107 (111)
301 PF14561 TPR_20: Tetratricopep 95.9 0.13 2.9E-06 41.0 10.4 66 155-220 8-73 (90)
302 KOG1310 WD40 repeat protein [G 95.8 0.039 8.5E-07 57.1 8.4 109 27-135 368-479 (758)
303 TIGR02561 HrpB1_HrpK type III 95.8 0.55 1.2E-05 40.7 13.9 85 33-117 10-94 (153)
304 PF13176 TPR_7: Tetratricopept 95.7 0.021 4.6E-07 36.4 4.2 28 315-342 1-28 (36)
305 KOG3783 Uncharacterized conser 95.7 0.74 1.6E-05 48.7 17.4 61 317-377 453-521 (546)
306 PRK10941 hypothetical protein; 95.7 0.11 2.4E-06 51.2 11.0 69 137-205 183-251 (269)
307 PF14561 TPR_20: Tetratricopep 95.7 0.14 3.1E-06 40.8 9.6 64 53-116 8-73 (90)
308 smart00028 TPR Tetratricopepti 95.7 0.018 3.9E-07 35.4 3.7 32 723-754 2-33 (34)
309 PRK15180 Vi polysaccharide bio 95.6 0.27 5.8E-06 50.6 13.2 128 41-168 297-424 (831)
310 PF04781 DUF627: Protein of un 95.6 0.13 2.8E-06 42.0 9.0 104 73-199 2-108 (111)
311 PF14853 Fis1_TPR_C: Fis1 C-te 95.5 0.086 1.9E-06 36.9 6.9 43 314-356 2-44 (53)
312 KOG3824 Huntingtin interacting 95.5 0.048 1E-06 52.5 7.4 72 107-178 122-193 (472)
313 KOG1464 COP9 signalosome, subu 95.5 1.4 3.1E-05 42.0 16.7 82 280-361 193-286 (440)
314 PF12968 DUF3856: Domain of Un 95.4 0.5 1.1E-05 38.8 11.7 60 35-94 11-82 (144)
315 KOG2396 HAT (Half-A-TPR) repea 95.4 4.2 9.1E-05 42.8 28.7 97 277-374 459-557 (568)
316 PF09613 HrpB1_HrpK: Bacterial 95.4 0.29 6.2E-06 43.3 11.3 78 73-150 16-93 (160)
317 PRK10941 hypothetical protein; 95.2 0.24 5.2E-06 48.8 11.5 60 173-234 185-244 (269)
318 PF14853 Fis1_TPR_C: Fis1 C-te 95.1 0.13 2.8E-06 36.0 6.6 34 138-171 4-37 (53)
319 KOG1538 Uncharacterized conser 95.0 1.2 2.7E-05 47.7 16.2 254 42-339 565-830 (1081)
320 COG3914 Spy Predicted O-linked 94.6 1.3 2.8E-05 47.4 15.4 127 52-178 50-185 (620)
321 KOG1463 26S proteasome regulat 94.6 5.4 0.00012 39.7 21.2 280 36-344 7-318 (411)
322 KOG3364 Membrane protein invol 94.6 0.68 1.5E-05 39.2 10.6 81 277-357 31-115 (149)
323 PF10602 RPN7: 26S proteasome 94.6 0.67 1.5E-05 42.7 12.1 103 170-272 37-142 (177)
324 smart00028 TPR Tetratricopepti 94.6 0.064 1.4E-06 32.7 3.9 32 314-345 2-33 (34)
325 KOG1538 Uncharacterized conser 94.5 1.3 2.8E-05 47.7 15.1 79 208-302 750-828 (1081)
326 KOG1839 Uncharacterized protei 94.1 0.52 1.1E-05 55.2 12.3 165 31-195 930-1125(1236)
327 COG3914 Spy Predicted O-linked 94.0 2.5 5.5E-05 45.3 15.8 124 81-204 45-177 (620)
328 PF10602 RPN7: 26S proteasome 93.9 1.3 2.8E-05 40.9 12.5 98 137-234 38-142 (177)
329 KOG3783 Uncharacterized conser 93.9 10 0.00023 40.5 26.6 223 120-346 252-524 (546)
330 COG4976 Predicted methyltransf 93.9 0.095 2.1E-06 48.5 4.8 58 78-135 6-63 (287)
331 PRK15180 Vi polysaccharide bio 93.8 0.39 8.5E-06 49.4 9.3 121 80-200 302-422 (831)
332 PF11207 DUF2989: Protein of u 93.6 0.89 1.9E-05 41.9 10.5 77 290-367 118-198 (203)
333 COG4976 Predicted methyltransf 93.5 0.12 2.7E-06 47.8 4.9 60 110-169 4-63 (287)
334 PF04053 Coatomer_WDAD: Coatom 93.5 5.2 0.00011 43.0 17.9 158 42-231 270-428 (443)
335 PF09986 DUF2225: Uncharacteri 93.5 1.1 2.4E-05 42.7 11.6 28 206-233 119-146 (214)
336 PF13374 TPR_10: Tetratricopep 93.5 0.087 1.9E-06 34.8 3.1 31 723-753 3-33 (42)
337 KOG2422 Uncharacterized conser 93.5 8.6 0.00019 41.3 18.5 49 46-94 251-311 (665)
338 PF15015 NYD-SP12_N: Spermatog 93.3 0.78 1.7E-05 46.6 10.3 116 30-161 173-288 (569)
339 TIGR02561 HrpB1_HrpK type III 93.2 1.3 2.8E-05 38.5 10.2 66 114-179 23-88 (153)
340 PF09986 DUF2225: Uncharacteri 93.1 1.9 4E-05 41.2 12.4 30 313-342 165-194 (214)
341 PF12968 DUF3856: Domain of Un 92.9 3.3 7.1E-05 34.3 11.5 86 77-162 19-127 (144)
342 KOG1463 26S proteasome regulat 92.9 11 0.00024 37.7 19.6 171 209-379 132-319 (411)
343 PF10579 Rapsyn_N: Rapsyn N-te 92.7 1 2.2E-05 34.2 7.7 64 32-95 5-71 (80)
344 PF04053 Coatomer_WDAD: Coatom 92.4 2.5 5.5E-05 45.3 13.6 128 213-370 269-396 (443)
345 KOG4814 Uncharacterized conser 92.3 1.1 2.4E-05 48.1 10.4 96 71-166 358-459 (872)
346 KOG3364 Membrane protein invol 92.3 3.3 7.2E-05 35.3 11.0 78 240-318 29-110 (149)
347 COG1747 Uncharacterized N-term 92.2 18 0.00039 38.4 21.8 226 97-346 62-292 (711)
348 COG5191 Uncharacterized conser 92.0 0.36 7.8E-06 46.9 5.9 77 128-204 100-177 (435)
349 KOG2581 26S proteasome regulat 91.3 6.5 0.00014 40.2 13.9 142 27-168 118-280 (493)
350 KOG2422 Uncharacterized conser 91.2 18 0.0004 38.9 17.6 160 114-274 251-450 (665)
351 KOG1310 WD40 repeat protein [G 91.0 0.64 1.4E-05 48.6 7.0 85 118-202 391-478 (758)
352 KOG3807 Predicted membrane pro 91.0 18 0.00039 36.0 18.1 163 138-317 187-350 (556)
353 PRK13184 pknD serine/threonine 90.9 40 0.00087 39.9 25.0 98 73-171 481-588 (932)
354 KOG4814 Uncharacterized conser 90.7 2.5 5.3E-05 45.6 10.9 96 137-234 356-457 (872)
355 COG5159 RPN6 26S proteasome re 90.7 17 0.00037 35.3 21.1 272 71-344 7-316 (421)
356 KOG1839 Uncharacterized protei 90.7 3.3 7.2E-05 48.9 12.9 129 70-198 935-1086(1236)
357 KOG2114 Vacuolar assembly/sort 90.5 25 0.00055 39.8 18.6 247 74-347 341-595 (933)
358 COG5191 Uncharacterized conser 90.4 0.58 1.3E-05 45.5 5.6 88 89-176 95-183 (435)
359 PF07721 TPR_4: Tetratricopept 90.3 0.33 7.2E-06 28.1 2.6 25 723-747 2-26 (26)
360 COG2912 Uncharacterized conser 90.2 3 6.4E-05 40.6 10.3 66 108-173 188-253 (269)
361 PF13374 TPR_10: Tetratricopep 90.0 0.71 1.5E-05 30.3 4.5 29 314-342 3-31 (42)
362 PF11207 DUF2989: Protein of u 89.9 3 6.5E-05 38.6 9.6 75 258-333 121-198 (203)
363 KOG3807 Predicted membrane pro 89.8 23 0.00049 35.3 17.6 148 71-231 188-337 (556)
364 PRK12798 chemotaxis protein; R 89.4 30 0.00065 36.1 24.9 270 28-307 32-324 (421)
365 KOG0529 Protein geranylgeranyl 88.4 34 0.00074 35.5 16.6 144 37-180 32-194 (421)
366 PF07720 TPR_3: Tetratricopept 88.4 1.5 3.2E-05 27.8 4.6 18 72-89 6-23 (36)
367 PF07720 TPR_3: Tetratricopept 88.3 1.8 3.8E-05 27.5 4.9 31 102-132 2-34 (36)
368 PF04190 DUF410: Protein of un 88.2 29 0.00062 34.4 20.5 31 331-361 212-242 (260)
369 PF12862 Apc5: Anaphase-promot 88.2 3.8 8.3E-05 33.1 8.3 27 208-234 44-70 (94)
370 COG3629 DnrI DNA-binding trans 88.0 9 0.00019 37.9 12.1 64 101-164 153-216 (280)
371 PF12862 Apc5: Anaphase-promot 87.9 4.4 9.4E-05 32.8 8.5 56 216-271 9-69 (94)
372 COG3629 DnrI DNA-binding trans 87.6 3.2 6.8E-05 41.0 8.7 93 36-130 118-216 (280)
373 PF07721 TPR_4: Tetratricopept 87.3 0.92 2E-05 26.2 3.0 22 69-90 3-24 (26)
374 COG2912 Uncharacterized conser 86.6 4.6 9.9E-05 39.3 9.0 74 70-143 184-257 (269)
375 COG4941 Predicted RNA polymera 85.1 37 0.00081 34.1 14.2 190 151-355 212-407 (415)
376 PF13041 PPR_2: PPR repeat fam 85.0 3.6 7.8E-05 28.4 5.7 44 278-321 3-46 (50)
377 PF09670 Cas_Cas02710: CRISPR- 84.9 18 0.00038 38.3 13.3 62 35-96 133-198 (379)
378 PF10579 Rapsyn_N: Rapsyn N-te 84.3 9 0.00019 29.3 7.6 53 74-126 13-68 (80)
379 PF15015 NYD-SP12_N: Spermatog 84.1 12 0.00027 38.4 10.9 86 139-227 232-320 (569)
380 PF10516 SHNi-TPR: SHNi-TPR; 84.1 2 4.3E-05 27.6 3.6 28 69-96 3-30 (38)
381 PF10516 SHNi-TPR: SHNi-TPR; 83.5 2.3 4.9E-05 27.4 3.7 29 314-342 2-30 (38)
382 PF14863 Alkyl_sulf_dimr: Alky 83.4 3.7 8.1E-05 35.9 6.2 49 34-82 71-119 (141)
383 KOG4014 Uncharacterized conser 82.9 37 0.0008 30.8 13.5 170 46-234 48-233 (248)
384 KOG2581 26S proteasome regulat 81.1 16 0.00034 37.6 10.3 113 534-682 171-285 (493)
385 PF11817 Foie-gras_1: Foie gra 81.0 50 0.0011 32.5 14.1 58 209-266 182-241 (247)
386 PF00244 14-3-3: 14-3-3 protei 80.9 55 0.0012 31.9 14.0 29 139-167 5-33 (236)
387 KOG0128 RNA-binding protein SA 80.3 1.2E+02 0.0025 34.8 26.1 269 47-350 93-384 (881)
388 COG3947 Response regulator con 79.2 9.1 0.0002 37.4 7.6 61 69-129 281-341 (361)
389 smart00386 HAT HAT (Half-A-TPR 79.1 4.8 0.0001 24.3 4.2 30 327-356 1-30 (33)
390 KOG0529 Protein geranylgeranyl 79.0 26 0.00056 36.3 11.2 127 48-174 90-234 (421)
391 COG5187 RPN7 26S proteasome re 78.7 66 0.0014 31.6 13.1 104 169-273 115-222 (412)
392 smart00299 CLH Clathrin heavy 78.6 45 0.00097 29.2 14.7 118 44-180 18-136 (140)
393 KOG0276 Vesicle coat complex C 78.3 38 0.00083 36.9 12.5 44 79-127 649-692 (794)
394 PF13041 PPR_2: PPR repeat fam 77.9 7.8 0.00017 26.7 5.3 27 207-233 5-31 (50)
395 TIGR03504 FimV_Cterm FimV C-te 77.6 3.1 6.8E-05 27.8 3.0 27 725-751 2-28 (44)
396 PF07219 HemY_N: HemY protein 77.4 3.2 7E-05 34.6 3.8 51 32-82 58-108 (108)
397 KOG2063 Vacuolar assembly/sort 77.1 50 0.0011 38.5 14.0 168 208-375 507-712 (877)
398 COG4455 ImpE Protein of avirul 76.3 32 0.00069 32.3 9.9 61 41-101 9-69 (273)
399 TIGR03504 FimV_Cterm FimV C-te 75.7 3.7 8.1E-05 27.4 2.9 23 140-162 4-26 (44)
400 smart00386 HAT HAT (Half-A-TPR 75.7 7.7 0.00017 23.3 4.4 27 150-176 2-28 (33)
401 PF10373 EST1_DNA_bind: Est1 D 75.5 8.7 0.00019 38.6 7.2 62 120-181 1-62 (278)
402 PF12739 TRAPPC-Trs85: ER-Golg 74.8 97 0.0021 33.3 15.1 28 104-131 211-238 (414)
403 PF00244 14-3-3: 14-3-3 protei 74.5 88 0.0019 30.5 14.8 58 35-92 3-62 (236)
404 COG3947 Response regulator con 74.3 13 0.00027 36.5 7.2 60 172-233 282-341 (361)
405 PF09670 Cas_Cas02710: CRISPR- 73.2 42 0.00091 35.5 11.7 19 324-342 252-270 (379)
406 PF04097 Nic96: Nup93/Nic96; 73.2 1.6E+02 0.0034 33.6 17.0 24 356-380 514-537 (613)
407 smart00299 CLH Clathrin heavy 72.9 64 0.0014 28.2 15.7 77 146-230 18-94 (140)
408 PF10373 EST1_DNA_bind: Est1 D 72.8 15 0.00032 36.9 8.1 62 86-147 1-62 (278)
409 KOG4014 Uncharacterized conser 72.1 79 0.0017 28.8 15.9 168 64-254 31-211 (248)
410 PF10255 Paf67: RNA polymerase 71.5 37 0.0008 35.8 10.5 60 104-163 125-192 (404)
411 KOG0686 COP9 signalosome, subu 71.3 1.1E+02 0.0024 31.9 13.2 65 170-234 151-216 (466)
412 PF12854 PPR_1: PPR repeat 71.0 11 0.00023 23.5 4.1 25 313-337 7-31 (34)
413 PF12854 PPR_1: PPR repeat 70.1 12 0.00026 23.3 4.2 24 207-230 9-32 (34)
414 PF10952 DUF2753: Protein of u 69.8 16 0.00034 30.6 5.7 69 724-805 3-74 (140)
415 COG4455 ImpE Protein of avirul 69.4 34 0.00074 32.1 8.4 58 145-202 11-68 (273)
416 PF11817 Foie-gras_1: Foie gra 69.3 39 0.00085 33.2 9.9 60 171-230 180-243 (247)
417 cd02682 MIT_AAA_Arch MIT: doma 67.7 25 0.00055 26.8 6.1 31 31-61 4-34 (75)
418 PF10255 Paf67: RNA polymerase 67.2 13 0.00028 39.0 6.2 59 283-341 127-192 (404)
419 KOG4521 Nuclear pore complex, 66.9 2E+02 0.0044 34.4 15.4 131 211-343 989-1133(1480)
420 KOG0546 HSP90 co-chaperone CPR 66.7 10 0.00022 38.2 5.0 128 39-181 228-355 (372)
421 KOG0889 Histone acetyltransfer 66.1 3.5E+02 0.0076 37.0 18.8 115 244-358 2737-2857(3550)
422 COG1747 Uncharacterized N-term 64.6 2.1E+02 0.0046 30.9 27.6 239 45-307 26-288 (711)
423 KOG0276 Vesicle coat complex C 64.1 1E+02 0.0023 33.8 11.9 47 44-95 648-694 (794)
424 PF04090 RNA_pol_I_TF: RNA pol 63.1 1.3E+02 0.0027 28.3 11.0 38 106-143 46-83 (199)
425 COG5536 BET4 Protein prenyltra 62.9 1.6E+02 0.0035 29.0 12.0 171 34-204 32-228 (328)
426 PF04190 DUF410: Protein of un 62.2 1.7E+02 0.0037 29.0 19.9 84 239-342 86-170 (260)
427 KOG0687 26S proteasome regulat 61.3 1.8E+02 0.0038 29.5 12.0 100 135-234 104-210 (393)
428 PF14863 Alkyl_sulf_dimr: Alky 60.3 31 0.00067 30.3 6.3 50 313-362 70-119 (141)
429 PF04097 Nic96: Nup93/Nic96; 59.4 1.7E+02 0.0036 33.5 13.7 26 322-348 514-539 (613)
430 PF09797 NatB_MDM20: N-acetylt 59.1 68 0.0015 33.8 10.0 41 85-125 201-241 (365)
431 TIGR02710 CRISPR-associated pr 59.0 2.4E+02 0.0051 29.7 14.4 63 30-92 125-196 (380)
432 PF12739 TRAPPC-Trs85: ER-Golg 58.9 2.6E+02 0.0056 30.1 15.8 28 317-344 374-401 (414)
433 KOG0687 26S proteasome regulat 58.5 2.1E+02 0.0046 28.9 12.7 104 169-273 104-211 (393)
434 KOG2114 Vacuolar assembly/sort 58.4 3.5E+02 0.0075 31.4 24.8 56 40-96 341-397 (933)
435 COG5187 RPN7 26S proteasome re 57.1 2.1E+02 0.0045 28.4 14.8 101 135-235 115-222 (412)
436 KOG1920 IkappaB kinase complex 56.8 4.4E+02 0.0094 32.0 23.4 24 208-231 942-965 (1265)
437 KOG2063 Vacuolar assembly/sort 56.6 4E+02 0.0087 31.5 19.2 28 243-270 684-711 (877)
438 PF01851 PC_rep: Proteasome/cy 56.4 14 0.0003 23.2 2.6 26 783-809 2-27 (35)
439 PF01535 PPR: PPR repeat; Int 56.2 20 0.00043 21.1 3.3 21 107-127 6-26 (31)
440 PF01535 PPR: PPR repeat; Int 55.9 20 0.00043 21.1 3.3 25 208-232 3-27 (31)
441 PF13226 DUF4034: Domain of un 55.9 2E+02 0.0042 28.8 11.7 130 39-186 6-150 (277)
442 PF02064 MAS20: MAS20 protein 55.9 30 0.00065 29.3 5.2 44 629-684 59-102 (121)
443 TIGR03362 VI_chp_7 type VI sec 55.0 2.5E+02 0.0053 28.6 18.0 162 27-199 96-280 (301)
444 smart00101 14_3_3 14-3-3 homol 54.0 2.2E+02 0.0048 27.8 16.8 50 221-270 144-198 (244)
445 KOG0546 HSP90 co-chaperone CPR 53.7 12 0.00025 37.9 2.9 70 71-140 279-348 (372)
446 PF13812 PPR_3: Pentatricopept 52.8 15 0.00031 22.4 2.4 29 395-423 3-31 (34)
447 TIGR00756 PPR pentatricopeptid 52.1 36 0.00078 20.5 4.2 23 283-305 5-27 (35)
448 KOG0292 Vesicle coat complex C 51.9 4.5E+02 0.0098 30.7 23.0 105 246-351 994-1122(1202)
449 PF04348 LppC: LppC putative l 51.5 4.9 0.00011 44.5 0.0 56 173-229 28-85 (536)
450 PF07163 Pex26: Pex26 protein; 51.0 2.6E+02 0.0057 27.7 14.2 137 207-371 37-182 (309)
451 PF11846 DUF3366: Domain of un 50.5 2.2E+02 0.0047 26.6 13.9 47 119-166 129-175 (193)
452 TIGR00756 PPR pentatricopeptid 50.1 34 0.00074 20.6 3.9 26 208-233 3-28 (35)
453 COG5536 BET4 Protein prenyltra 49.9 1.1E+02 0.0023 30.2 8.4 127 50-176 91-234 (328)
454 PF09205 DUF1955: Domain of un 49.5 1.2E+02 0.0025 26.2 7.6 145 35-198 4-149 (161)
455 KOG4521 Nuclear pore complex, 49.2 5.6E+02 0.012 31.1 17.5 116 67-186 920-1071(1480)
456 PF04348 LppC: LppC putative l 46.0 6.7 0.00015 43.5 0.0 93 208-301 27-121 (536)
457 cd02683 MIT_1 MIT: domain cont 45.9 50 0.0011 25.4 4.7 31 31-61 4-34 (77)
458 PF04840 Vps16_C: Vps16, C-ter 45.9 3.5E+02 0.0076 27.8 27.0 102 251-371 185-286 (319)
459 KOG2062 26S proteasome regulat 45.8 5.1E+02 0.011 29.6 17.2 149 247-407 505-656 (929)
460 KOG0686 COP9 signalosome, subu 44.3 4.1E+02 0.0088 28.0 14.9 96 244-339 151-255 (466)
461 PF04212 MIT: MIT (microtubule 43.8 65 0.0014 24.0 5.1 29 33-61 5-33 (69)
462 cd02681 MIT_calpain7_1 MIT: do 43.8 53 0.0011 25.2 4.5 30 32-61 5-34 (76)
463 PF11846 DUF3366: Domain of un 43.3 72 0.0016 29.9 6.5 47 86-133 130-176 (193)
464 cd02682 MIT_AAA_Arch MIT: doma 43.3 97 0.0021 23.7 5.7 23 318-340 11-33 (75)
465 KOG4151 Myosin assembly protei 42.4 1E+02 0.0022 35.1 8.1 106 36-141 56-167 (748)
466 COG4259 Uncharacterized protei 41.2 1.5E+02 0.0033 23.9 6.6 50 299-348 58-107 (121)
467 KOG4279 Serine/threonine prote 41.1 1.4E+02 0.003 33.7 8.6 69 46-115 256-334 (1226)
468 cd02680 MIT_calpain7_2 MIT: do 41.0 52 0.0011 25.1 4.1 16 114-129 19-34 (75)
469 PF10037 MRP-S27: Mitochondria 40.7 3.7E+02 0.008 28.9 11.7 58 248-305 108-165 (429)
470 PHA02537 M terminase endonucle 40.7 38 0.00082 32.5 4.1 92 77-168 93-211 (230)
471 PF01239 PPTA: Protein prenylt 40.7 81 0.0018 18.9 4.2 26 592-617 3-28 (31)
472 PF10037 MRP-S27: Mitochondria 40.3 3.8E+02 0.0082 28.8 11.7 108 252-359 75-186 (429)
473 cd02680 MIT_calpain7_2 MIT: do 40.0 61 0.0013 24.8 4.3 31 32-62 5-35 (75)
474 KOG1497 COP9 signalosome, subu 39.5 4.2E+02 0.0091 26.8 17.2 99 206-304 104-210 (399)
475 PF13226 DUF4034: Domain of un 38.5 3.5E+02 0.0076 27.0 10.4 93 120-227 62-155 (277)
476 PF14276 DUF4363: Domain of un 37.5 1.8E+02 0.004 24.6 7.5 33 30-62 25-57 (121)
477 PF10952 DUF2753: Protein of u 36.8 1.9E+02 0.0042 24.5 6.9 25 105-129 5-29 (140)
478 KOG1920 IkappaB kinase complex 36.5 8.8E+02 0.019 29.7 26.0 23 37-59 681-703 (1265)
479 PF06957 COPI_C: Coatomer (COP 36.5 1.3E+02 0.0028 32.0 7.5 31 32-62 203-233 (422)
480 KOG0128 RNA-binding protein SA 36.0 7.6E+02 0.016 28.8 32.9 259 117-379 95-379 (881)
481 smart00671 SEL1 Sel1-like repe 34.6 91 0.002 19.0 4.0 27 69-95 3-33 (36)
482 KOG0292 Vesicle coat complex C 34.3 5.1E+02 0.011 30.3 11.7 33 32-64 990-1022(1202)
483 smart00101 14_3_3 14-3-3 homol 34.2 4.6E+02 0.0099 25.7 18.5 57 36-92 4-64 (244)
484 KOG4279 Serine/threonine prote 34.1 1.1E+02 0.0024 34.4 6.7 102 205-307 201-316 (1226)
485 cd02678 MIT_VPS4 MIT: domain c 34.0 1E+02 0.0022 23.5 4.9 30 32-61 5-34 (75)
486 PF09205 DUF1955: Domain of un 33.3 3.2E+02 0.007 23.7 15.7 56 109-164 94-149 (161)
487 PF08771 Rapamycin_bind: Rapam 32.9 1.9E+02 0.0041 23.7 6.4 87 527-619 9-97 (100)
488 cd02684 MIT_2 MIT: domain cont 32.6 1.1E+02 0.0023 23.5 4.7 30 32-61 5-34 (75)
489 TIGR00985 3a0801s04tom mitocho 32.6 1E+02 0.0022 27.2 5.1 43 630-684 87-130 (148)
490 KOG4563 Cell cycle-regulated h 32.6 83 0.0018 32.2 5.1 58 29-86 37-102 (400)
491 PF00637 Clathrin: Region in C 32.3 7 0.00015 34.5 -2.1 117 284-410 13-142 (143)
492 PRK15490 Vi polysaccharide bio 32.2 2.9E+02 0.0063 30.9 9.5 57 101-159 42-98 (578)
493 TIGR02710 CRISPR-associated pr 32.2 6.3E+02 0.014 26.7 12.5 54 73-126 136-196 (380)
494 PF12309 KBP_C: KIF-1 binding 32.1 1.1E+02 0.0024 32.1 6.3 53 702-754 263-341 (371)
495 TIGR03362 VI_chp_7 type VI sec 31.9 5.6E+02 0.012 26.0 19.3 150 147-306 111-278 (301)
496 smart00745 MIT Microtubule Int 31.7 1.2E+02 0.0025 23.2 4.9 29 33-61 8-36 (77)
497 PF07219 HemY_N: HemY protein 31.6 2.1E+02 0.0046 23.7 6.8 46 71-116 63-108 (108)
498 PRK15490 Vi polysaccharide bio 30.9 2.9E+02 0.0063 30.9 9.3 79 113-193 20-98 (578)
499 COG4941 Predicted RNA polymera 30.8 6E+02 0.013 26.0 17.9 29 84-112 213-241 (415)
500 PF08311 Mad3_BUB1_I: Mad3/BUB 30.6 3.5E+02 0.0075 23.2 13.2 120 185-305 1-126 (126)
No 1
>KOG2076 consensus RNA polymerase III transcription factor TFIIIC [Transcription]
Probab=100.00 E-value=3.1e-89 Score=713.10 Aligned_cols=738 Identities=33% Similarity=0.503 Sum_probs=614.5
Q ss_pred hhccccccCCCCCCCCCCCHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHcCChHHHHHHHH
Q 003563 12 FSQLNKKRGRRKGSKNKLSPGVTKMLGEASLQYAYGNFEQAISLLKEVVRLSPNLPETYNTLGLAHSALGNHKSAFDFYV 91 (810)
Q Consensus 12 ~~~~~~~~~~~~~~~~~~~~~~~~~l~~a~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~ 91 (810)
.+.+.+++++....+..+++++..++++|+.++..|++++|..++.++|+++|.++.+|+.||.+|.++|+.++|..++.
T Consensus 118 ~s~~~~k~~~~~r~~~~l~~~l~~ll~eAN~lfarg~~eeA~~i~~EvIkqdp~~~~ay~tL~~IyEqrGd~eK~l~~~l 197 (895)
T KOG2076|consen 118 KSTGTKKRGRRSRGKSKLAPELRQLLGEANNLFARGDLEEAEEILMEVIKQDPRNPIAYYTLGEIYEQRGDIEKALNFWL 197 (895)
T ss_pred ecccCCccCCCCCcccccCHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCccchhhHHHHHHHHHHcccHHHHHHHHH
Confidence 44556666777777889999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHhcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC---
Q 003563 92 IAAHLSPKDSALWKQLLTFAVQKGDTAQAMYYIRQAIRAEPKDISLRIHLASFYVEIGDYEKAAESYEQIQKLFPDN--- 168 (810)
Q Consensus 92 ~a~~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~--- 168 (810)
.|.+++|++.+.|..++....++|++++|.-||.+|++.+|.+....+..+.+|.+.|+...|.+.|.+++...|..
T Consensus 198 lAAHL~p~d~e~W~~ladls~~~~~i~qA~~cy~rAI~~~p~n~~~~~ers~L~~~~G~~~~Am~~f~~l~~~~p~~d~e 277 (895)
T KOG2076|consen 198 LAAHLNPKDYELWKRLADLSEQLGNINQARYCYSRAIQANPSNWELIYERSSLYQKTGDLKRAMETFLQLLQLDPPVDIE 277 (895)
T ss_pred HHHhcCCCChHHHHHHHHHHHhcccHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHhChHHHHHHHHHHHHhhCCchhHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999932
Q ss_pred --HHHHHHHHHHHHHcCChHHHHHHHHHHHhhCCCCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHH-------------
Q 003563 169 --VDATKTGAQLFLKCGQTARSIGILEEYLKVHPSDADLSVIDLLVAILMENNAYEKTLQHIEHAQI------------- 233 (810)
Q Consensus 169 --~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~------------- 233 (810)
.+.....+..+...++-+.|++.++.++....+......++.++.+++....++.|.........
T Consensus 278 r~~d~i~~~~~~~~~~~~~e~a~~~le~~~s~~~~~~~~ed~ni~ael~l~~~q~d~~~~~i~~~~~r~~e~d~~e~~~~ 357 (895)
T KOG2076|consen 278 RIEDLIRRVAHYFITHNERERAAKALEGALSKEKDEASLEDLNILAELFLKNKQSDKALMKIVDDRNRESEKDDSEWDTD 357 (895)
T ss_pred HHHHHHHHHHHHHHHhhHHHHHHHHHHHHHhhccccccccHHHHHHHHHHHhHHHHHhhHHHHHHhccccCCChhhhhhh
Confidence 13344567888888888999999999998554444434688999999999999999998877655
Q ss_pred ---------HhcCCCC--CcHHH-HHHHHHHHHhcCCHHHHHHHHHHhhccCCchhHhHHHHHHHHHHHcCCcHHHHHHH
Q 003563 234 ---------VRFSGKE--LPLKL-KVKAGICYLRLGNMEKAEILFADLQWKNAIDHADLITEVADTLMSLGHSNSALKYY 301 (810)
Q Consensus 234 ---------~~~~~~~--~~~~~-~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~ 301 (810)
..+.+.. ....+ +..++.+..+.++..+++.++...-...+.+.++.++.++.++...|++.+|+.+|
T Consensus 358 ~~~~~~~~~~~~~~~~~s~~l~v~rl~icL~~L~~~e~~e~ll~~l~~~n~~~~d~~dL~~d~a~al~~~~~~~~Al~~l 437 (895)
T KOG2076|consen 358 ERRREEPNALCEVGKELSYDLRVIRLMICLVHLKERELLEALLHFLVEDNVWVSDDVDLYLDLADALTNIGKYKEALRLL 437 (895)
T ss_pred hhccccccccccCCCCCCccchhHhHhhhhhcccccchHHHHHHHHHHhcCChhhhHHHHHHHHHHHHhcccHHHHHHHH
Confidence 1111111 22233 44555555566666666666665444447778999999999999999999999999
Q ss_pred HHHHhccCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHhhcCCCHHHHHHHHHHHHHcCCHHHHHHhcCCCCCCCcccC
Q 003563 302 HFLETNAGTDNGYLYLKLAECYLSLKERAHAIMFFYKALDRFEDNIDARLTLASLLLEEAKEEEAITLLSPPKDLDSLDM 381 (810)
Q Consensus 302 ~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~ 381 (810)
..+.......+..+|+.+|.||..+|.+++|+++|++++...|++.+++..|+.++.++|++++|.+.+++....++.+.
T Consensus 438 ~~i~~~~~~~~~~vw~~~a~c~~~l~e~e~A~e~y~kvl~~~p~~~D~Ri~Lasl~~~~g~~EkalEtL~~~~~~D~~~~ 517 (895)
T KOG2076|consen 438 SPITNREGYQNAFVWYKLARCYMELGEYEEAIEFYEKVLILAPDNLDARITLASLYQQLGNHEKALETLEQIINPDGRNA 517 (895)
T ss_pred HHHhcCccccchhhhHHHHHHHHHHhhHHHHHHHHHHHHhcCCCchhhhhhHHHHHHhcCCHHHHHHHHhcccCCCccch
Confidence 99997756667889999999999999999999999999999999999999999999999999999999999987666544
Q ss_pred CCCCCChhhhHHHHHHHHHHHHHhcCCchhHHhhhhhhhhhhHHHHHHHHHhhhhhccchhhHHHHHhHhcCCCCCcccc
Q 003563 382 NSDKSNPWWLNEKIIMKLCHIYRAKGMPEDFVDAIFPLVCESLCVEALRQKVKVKRRLTKGILQQRTKIYNNLPTDSILC 461 (810)
Q Consensus 382 ~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 461 (810)
. ...||++.++...+..+|...|+.++.+.+...++..........++.+++++.... . .
T Consensus 518 e---~~a~~~e~ri~~~r~d~l~~~gk~E~fi~t~~~Lv~~~~~~~~~f~~~~k~r~~~~~---------~--------~ 577 (895)
T KOG2076|consen 518 E---ACAWEPERRILAHRCDILFQVGKREEFINTASTLVDDFLKKRYIFPRNKKKRRRAIA---------G--------T 577 (895)
T ss_pred h---hccccHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHhcchHHHHHHHhhc---------c--------c
Confidence 3 567888999999999999999999999999999998877655543333222211100 0 0
Q ss_pred CCCCCCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccccCC--CCCCchhhhhccCCCCCCCCCCchhhHHHHHHHH
Q 003563 462 GIRPAAPKSELLVAARARKKIQKKEALKEEKKALAKAAGVEWHS--DDTDDESQQEAFREPPLPNLLKNEENQCLIIDLC 539 (810)
Q Consensus 462 ~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 539 (810)
+......+.+.... .... +..|.. ....++ .++.....++ ++.++|++++..+.
T Consensus 578 ~~~~~~~~~~~~~~--~~~k------------------~~~~~~~~~~l~d~---~~~~~~e~~~-Lsiddwfel~~e~i 633 (895)
T KOG2076|consen 578 TSKRYSELLKQIIR--AREK------------------ATDDNVMEKALSDG---TEFRAVELRG-LSIDDWFELFRELI 633 (895)
T ss_pred cccccchhHHHHHH--HHhc------------------cCchHHhhhcccch---hhhhhhhhcc-CcHHHHHHHHHHHH
Confidence 00000011111100 0000 000000 000000 1122233333 57789999999999
Q ss_pred HHHHhhhcHHHHHHHHHHHHhhhhccCChhHHHHHHHhhhhhhccccCCchhHHHHHHHHHh-----CCCChhHhHHHHH
Q 003563 540 KALASLQRYEEASEIINLSMRLAYNILPLEKKEELRSLGAKMAYDSTDPNHGFDCAKYILQL-----HPYSLSAWNCYYK 614 (810)
Q Consensus 540 ~~~~~~~~~~eA~~~~~~al~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~a~~~~r~~~~~-----~p~~~~~~~~~~~ 614 (810)
.++.+.++++||+.++..|+....+.+++++...+.++++.|++..+|+..|++++|.++.. +|.....||+...
T Consensus 634 ~~L~k~~r~qeAl~vv~~a~~~~~f~~~~~~~k~l~~~~l~~s~~~~d~~~a~~~lR~~i~~~~~~~~~~q~~l~n~~~s 713 (895)
T KOG2076|consen 634 LSLAKLQRVQEALSVVFTALEAYIFFQDSEIRKELQFLGLKASLYARDPGDAFSYLRSVITQFQFYLDVYQLNLWNLDFS 713 (895)
T ss_pred HHHHHHHhHHHHHHHHHHHHhhhhhhccHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHH
Confidence 99999999999999999999998887888888899999999999999999999999999999 8888999997666
Q ss_pred HHHhhcccccccchhhHHHHHHHHhcCCC-CCchhhhcchhhhccchHHHHHHHHHHHhhCCCChHHHHHHHHHHHHHHh
Q 003563 615 VLSRMGKINSKHSKHSKFIRYLRAKYKDC-VPPIIISGHQFTMASHHQDAARCYLEAYKLLPENPLINLCVGSALINLAL 693 (810)
Q Consensus 615 ~~~~~~~~~~~~~~~~~~~~~~~~~~p~~-~~~~~~~g~~~~~~~~~~~Ai~~y~~a~~~~p~~p~~~l~l~~~~~~~~~ 693 (810)
+++..++ .+...+++.+++.++|++ +|+.+++||+++.+++|..|+++|++|+..+|++|++++|||++|+|+|+
T Consensus 714 ~~~~~~q----~v~~~R~~~~~~~~~~~~~~~l~~i~gh~~~~~~s~~~Al~~y~ra~~~~pd~Pl~nl~lglafih~a~ 789 (895)
T KOG2076|consen 714 YFSKYGQ----RVCYLRLIMRLLVKNKDDTPPLALIYGHNLFVNASFKHALQEYMRAFRQNPDSPLINLCLGLAFIHLAL 789 (895)
T ss_pred HHHHHHH----HHHHHHHHHHHhccCccCCcceeeeechhHhhccchHHHHHHHHHHHHhCCCCcHHHHHHHHHHHHHHH
Confidence 6666666 467788888988899987 66668889999999999999999999999999999999999999999999
Q ss_pred CccccchhHHHHHHHHHHHHhHhhcCC--CchhhhhHHHHHHHhChhhHHHHHHHHHhccccccCCCCCCCCCCCccccc
Q 003563 694 GFRLQNKHQCLAQGFAFLYNNLRLCEH--SQEALYNIARACHHVGLVSLAASYYEKVLAIKEKDYPIPKHNDKRPDLMES 771 (810)
Q Consensus 694 ~r~~~~r~~~~~q~~~~l~~y~~~~~~--~~e~~ynlgr~~~~lg~~~~Ai~~Y~~vL~~~~~~~~~~~~~~~~~~~~~~ 771 (810)
||.+.+||.+|.|||+|+++|.++|.. +||+.|||||+||++|+.|+|++||+|||+++|.... +
T Consensus 790 qr~v~~Rh~~i~qG~afL~RY~~lR~~~~~QEa~YNigRayh~~gl~~LA~~YYekvL~~~p~~~~-------------~ 856 (895)
T KOG2076|consen 790 QRRVSNRHAQIAQGFAFLKRYKELRRCEEKQEAFYNIGRAYHQIGLVHLAVSYYEKVLEVSPKDVT-------------D 856 (895)
T ss_pred HHHHhhhHHHHHHHHHHHHHHHHhhccHHHHHHHHHHHHHHHHcccHHHHHHHHHHHhCCCccccc-------------c
Confidence 999999999999999999999999887 8999999999999999999999999999999875321 1
Q ss_pred CCCCcccccHHHHHHHHHHHHhcCCHHHHHHHHHhhccC
Q 003563 772 GESGYCDLQREAAYNLHLIYKNSGAVDLARQLLKDYCTF 810 (810)
Q Consensus 772 ~~~~~~~l~~eaa~nl~~iy~~~g~~~~A~~~~~~~~~~ 810 (810)
...+++||+++|||||++||+.|||..+|+++++|||+|
T Consensus 857 ~~~d~~dLrkeAA~NL~LIY~~SGn~~lArqil~kyl~~ 895 (895)
T KOG2076|consen 857 PKEDNYDLRKEAAYNLHLIYKKSGNMQLARQILEKYLVF 895 (895)
T ss_pred ccCCcccHHHHHHhhhhhhhccCCcHHHHHHHHHhhccC
Confidence 122579999999999999999999999999999999997
No 2
>TIGR02917 PEP_TPR_lipo putative PEP-CTERM system TPR-repeat lipoprotein. This protein family occurs in strictly within a subset of Gram-negative bacterial species with the proposed PEP-CTERM/exosortase system, analogous to the LPXTG/sortase system common in Gram-positive bacteria. This protein occurs in a species if and only if a transmembrane histidine kinase (TIGR02916) and a DNA-binding response regulator (TIGR02915) also occur. The present of tetratricopeptide repeats (TPR) suggests protein-protein interaction, possibly for the regulation of PEP-CTERM protein expression, since many PEP-CTERM proteins in these genomes are preceded by a proposed DNA binding site for the response regulator.
Probab=100.00 E-value=2.1e-46 Score=450.89 Aligned_cols=638 Identities=18% Similarity=0.184 Sum_probs=552.1
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCCCHHHHHHHHHHHH
Q 003563 33 VTKMLGEASLQYAYGNFEQAISLLKEVVRLSPNLPETYNTLGLAHSALGNHKSAFDFYVIAAHLSPKDSALWKQLLTFAV 112 (810)
Q Consensus 33 ~~~~l~~a~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~p~~~~~~~~la~~~~ 112 (810)
....+..|..++..|++++|+..++++++.+|+...++..+|.++...|++++|...+.+++...|.+...+..++.++.
T Consensus 261 ~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~la~~~~ 340 (899)
T TIGR02917 261 PLAHYLKALVDFQKKNYEDARETLQDALKSAPEYLPALLLAGASEYQLGNLEQAYQYLNQILKYAPNSHQARRLLASIQL 340 (899)
T ss_pred chHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCchhHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHH
Confidence 34567788999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HcCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCChHHHHHHH
Q 003563 113 QKGDTAQAMYYIRQAIRAEPKDISLRIHLASFYVEIGDYEKAAESYEQIQKLFPDNVDATKTGAQLFLKCGQTARSIGIL 192 (810)
Q Consensus 113 ~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~~ 192 (810)
..|++++|+..+++++..+|.++..+..+|.++...|++++|+..|+++++..|++..++..+|.++...|++++|+..+
T Consensus 341 ~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~ 420 (899)
T TIGR02917 341 RLGRVDEAIATLSPALGLDPDDPAALSLLGEAYLALGDFEKAAEYLAKATELDPENAAARTQLGISKLSQGDPSEAIADL 420 (899)
T ss_pred HCCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHhCCChHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHhhCCCCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhcCCCCCcHHHHHHHHHHHHhcCCHHHHHHHHHHhhcc
Q 003563 193 EEYLKVHPSDADLSVIDLLVAILMENNAYEKTLQHIEHAQIVRFSGKELPLKLKVKAGICYLRLGNMEKAEILFADLQWK 272 (810)
Q Consensus 193 ~~~l~~~p~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~ 272 (810)
+++++..|.... ....++..+...|++++|+..+++.... .+.....+..+|.++...|++++|+..|++++..
T Consensus 421 ~~a~~~~~~~~~--~~~~l~~~~~~~~~~~~A~~~~~~~~~~----~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~ 494 (899)
T TIGR02917 421 ETAAQLDPELGR--ADLLLILSYLRSGQFDKALAAAKKLEKK----QPDNASLHNLLGAIYLGKGDLAKAREAFEKALSI 494 (899)
T ss_pred HHHHhhCCcchh--hHHHHHHHHHhcCCHHHHHHHHHHHHHh----CCCCcHHHHHHHHHHHhCCCHHHHHHHHHHHHhh
Confidence 999999998776 6678899999999999999999999887 5667788999999999999999999999999988
Q ss_pred CCchhHhHHHHHHHHHHHcCCcHHHHHHHHHHHhccCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHhhcCCCHHHHHH
Q 003563 273 NAIDHADLITEVADTLMSLGHSNSALKYYHFLETNAGTDNGYLYLKLAECYLSLKERAHAIMFFYKALDRFEDNIDARLT 352 (810)
Q Consensus 273 ~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~ 352 (810)
.|. ...++..++.++...|++++|+..|++++.. .|.+..++..++.++...|++++|+..+++++..+|++...+..
T Consensus 495 ~~~-~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~-~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~ 572 (899)
T TIGR02917 495 EPD-FFPAAANLARIDIQEGNPDDAIQRFEKVLTI-DPKNLRAILALAGLYLRTGNEEEAVAWLEKAAELNPQEIEPALA 572 (899)
T ss_pred CCC-cHHHHHHHHHHHHHCCCHHHHHHHHHHHHHh-CcCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCccchhHHHH
Confidence 875 7889999999999999999999999999976 78899999999999999999999999999999999999999999
Q ss_pred HHHHHHHcCCHHHHHHhcCCCCCCCcccCCCCCCChhhhHHHHHHHHHHHHHhcCCchhHHhhhhhhhhhhHHHHHHHHH
Q 003563 353 LASLLLEEAKEEEAITLLSPPKDLDSLDMNSDKSNPWWLNEKIIMKLCHIYRAKGMPEDFVDAIFPLVCESLCVEALRQK 432 (810)
Q Consensus 353 la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~ 432 (810)
++.++...|++++|+..++++.+..|.+. .++..+|.+|...|++++|++.++.+++..+.......
T Consensus 573 l~~~~~~~~~~~~A~~~~~~~~~~~~~~~------------~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~- 639 (899)
T TIGR02917 573 LAQYYLGKGQLKKALAILNEAADAAPDSP------------EAWLMLGRAQLAAGDLNKAVSSFKKLLALQPDSALALL- 639 (899)
T ss_pred HHHHHHHCCCHHHHHHHHHHHHHcCCCCH------------HHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHH-
Confidence 99999999999999999999998888653 58899999999999999999999999866332100000
Q ss_pred hhhhhccchhhHHHHHhHhcCCCCCccccCCCCCCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccccCCCCCCchh
Q 003563 433 VKVKRRLTKGILQQRTKIYNNLPTDSILCGIRPAAPKSELLVAARARKKIQKKEALKEEKKALAKAAGVEWHSDDTDDES 512 (810)
Q Consensus 433 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 512 (810)
........ .| ... .+...+. ..+
T Consensus 640 -------------~l~~~~~~-------~~--------~~~---~A~~~~~---------------~~~----------- 662 (899)
T TIGR02917 640 -------------LLADAYAV-------MK--------NYA---KAITSLK---------------RAL----------- 662 (899)
T ss_pred -------------HHHHHHHH-------cC--------CHH---HHHHHHH---------------HHH-----------
Confidence 00000000 00 000 0000000 000
Q ss_pred hhhccCCCCCCCCCCchhhHHHHHHHHHHHHhhhcHHHHHHHHHHHHhhhhccCChhHHHHHHHhhhhhhccccCCchhH
Q 003563 513 QQEAFREPPLPNLLKNEENQCLIIDLCKALASLQRYEEASEIINLSMRLAYNILPLEKKEELRSLGAKMAYDSTDPNHGF 592 (810)
Q Consensus 513 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~eA~~~~~~al~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~a~ 592 (810)
-..|++..+...++.++...|++++|..+++.+....+. ........+.+....|++++|.
T Consensus 663 -------------~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~------~~~~~~~~~~~~~~~g~~~~A~ 723 (899)
T TIGR02917 663 -------------ELKPDNTEAQIGLAQLLLAAKRTESAKKIAKSLQKQHPK------AALGFELEGDLYLRQKDYPAAI 723 (899)
T ss_pred -------------hcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCcC------ChHHHHHHHHHHHHCCCHHHHH
Confidence 124556678888999999999999999999998764321 2223334456667889999999
Q ss_pred HHHHHHHHhCCCChhHhHHHHHHHHhhcccccccchhhHHHHHHHHhcCCCCCchhhhcchhhhccchHHHHHHHHHHHh
Q 003563 593 DCAKYILQLHPYSLSAWNCYYKVLSRMGKINSKHSKHSKFIRYLRAKYKDCVPPIIISGHQFTMASHHQDAARCYLEAYK 672 (810)
Q Consensus 593 ~~~r~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~g~~~~~~~~~~~Ai~~y~~a~~ 672 (810)
..++.++...|++ ..+..+..++...|+ ...+.+.+.+.++.+|++.......|.++...|++..|+..|.++++
T Consensus 724 ~~~~~~~~~~~~~-~~~~~l~~~~~~~g~----~~~A~~~~~~~l~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~ 798 (899)
T TIGR02917 724 QAYRKALKRAPSS-QNAIKLHRALLASGN----TAEAVKTLEAWLKTHPNDAVLRTALAELYLAQKDYDKAIKHYRTVVK 798 (899)
T ss_pred HHHHHHHhhCCCc-hHHHHHHHHHHHCCC----HHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCcCHHHHHHHHHHHHH
Confidence 9999999999988 555556666666666 45788889999999999988888889999999999999999999999
Q ss_pred hCCCChHHHHHHHHHHHHHHhCccccchhHHHHHHHHHHHHhHhhcCCCchhhhhHHHHHHHhChhhHHHHHHHHHhccc
Q 003563 673 LLPENPLINLCVGSALINLALGFRLQNKHQCLAQGFAFLYNNLRLCEHSQEALYNIARACHHVGLVSLAASYYEKVLAIK 752 (810)
Q Consensus 673 ~~p~~p~~~l~l~~~~~~~~~~r~~~~r~~~~~q~~~~l~~y~~~~~~~~e~~ynlgr~~~~lg~~~~Ai~~Y~~vL~~~ 752 (810)
.+|++|.+...+|+++.... + .+|+..+.+..++.|++..+++++|.++.+.|.+++|+++|+++++..
T Consensus 799 ~~p~~~~~~~~l~~~~~~~~------~-----~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~a~~~~ 867 (899)
T TIGR02917 799 KAPDNAVVLNNLAWLYLELK------D-----PRALEYAEKALKLAPNIPAILDTLGWLLVEKGEADRALPLLRKAVNIA 867 (899)
T ss_pred hCCCCHHHHHHHHHHHHhcC------c-----HHHHHHHHHHHhhCCCCcHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC
Confidence 99999999999999987432 1 248899999988899999999999999999999999999999999987
Q ss_pred cccCCCCCCCCCCCcccccCCCCcccccHHHHHHHHHHHHhcCCHHHHHHHHHhhc
Q 003563 753 EKDYPIPKHNDKRPDLMESGESGYCDLQREAAYNLHLIYKNSGAVDLARQLLKDYC 808 (810)
Q Consensus 753 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~~eaa~nl~~iy~~~g~~~~A~~~~~~~~ 808 (810)
|.+ .++.++++.+|...|+++.|..++++-+
T Consensus 868 ~~~-------------------------~~~~~~l~~~~~~~g~~~~A~~~~~~~~ 898 (899)
T TIGR02917 868 PEA-------------------------AAIRYHLALALLATGRKAEARKELDKLL 898 (899)
T ss_pred CCC-------------------------hHHHHHHHHHHHHcCCHHHHHHHHHHHh
Confidence 642 6788999999999999999999999875
No 3
>TIGR02917 PEP_TPR_lipo putative PEP-CTERM system TPR-repeat lipoprotein. This protein family occurs in strictly within a subset of Gram-negative bacterial species with the proposed PEP-CTERM/exosortase system, analogous to the LPXTG/sortase system common in Gram-positive bacteria. This protein occurs in a species if and only if a transmembrane histidine kinase (TIGR02916) and a DNA-binding response regulator (TIGR02915) also occur. The present of tetratricopeptide repeats (TPR) suggests protein-protein interaction, possibly for the regulation of PEP-CTERM protein expression, since many PEP-CTERM proteins in these genomes are preceded by a proposed DNA binding site for the response regulator.
Probab=100.00 E-value=4.5e-45 Score=439.30 Aligned_cols=664 Identities=14% Similarity=0.077 Sum_probs=483.6
Q ss_pred CHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCCCHHHHHHHHH
Q 003563 30 SPGVTKMLGEASLQYAYGNFEQAISLLKEVVRLSPNLPETYNTLGLAHSALGNHKSAFDFYVIAAHLSPKDSALWKQLLT 109 (810)
Q Consensus 30 ~~~~~~~l~~a~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~p~~~~~~~~la~ 109 (810)
+.....+...|..+...|++++|+..|++++..+|+++.++..+|.++...|++++|+..+++++..+|.+..++..+|.
T Consensus 122 ~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~ 201 (899)
T TIGR02917 122 EGAAELLALRGLAYLGLGQLELAQKSYEQALAIDPRSLYAKLGLAQLALAENRFDEARALIDEVLTADPGNVDALLLKGD 201 (899)
T ss_pred hhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCChhhHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCChHHHHHHHH
Confidence 44556778899999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHcCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCChHHHH
Q 003563 110 FAVQKGDTAQAMYYIRQAIRAEPKDISLRIHLASFYVEIGDYEKAAESYEQIQKLFPDNVDATKTGAQLFLKCGQTARSI 189 (810)
Q Consensus 110 ~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~ 189 (810)
++...|++++|+.+|++++..+|.++.++..++.++...|++++|...++++++..|+++..+...|.++...|++++|+
T Consensus 202 ~~~~~g~~~~A~~~~~~a~~~~p~~~~~~~~~~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~ 281 (899)
T TIGR02917 202 LLLSLGNIELALAAYRKAIALRPNNPAVLLALATILIEAGEFEEAEKHADALLKKAPNSPLAHYLKALVDFQKKNYEDAR 281 (899)
T ss_pred HHHhcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCchHHHHHHHHHHHhcCHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHhhCCCCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhcCCCCCcHHHHHHHHHHHHhcCCHHHHHHHHHHh
Q 003563 190 GILEEYLKVHPSDADLSVIDLLVAILMENNAYEKTLQHIEHAQIVRFSGKELPLKLKVKAGICYLRLGNMEKAEILFADL 269 (810)
Q Consensus 190 ~~~~~~l~~~p~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~ 269 (810)
..++++++.+|+... .+..+|.++...|++++|...+.+++.. .|........++.++...|++++|+..++++
T Consensus 282 ~~~~~~l~~~~~~~~--~~~~~~~~~~~~g~~~~A~~~~~~~~~~----~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~ 355 (899)
T TIGR02917 282 ETLQDALKSAPEYLP--ALLLAGASEYQLGNLEQAYQYLNQILKY----APNSHQARRLLASIQLRLGRVDEAIATLSPA 355 (899)
T ss_pred HHHHHHHHhCCCchh--HHHHHHHHHHHcCCHHHHHHHHHHHHHh----CCCChHHHHHHHHHHHHCCCHHHHHHHHHHH
Confidence 999999999998765 6778999999999999999999999988 5666778888999999999999999999999
Q ss_pred hccCCchhHhHHHHHHHHHHHcCCcHHHHHHHHHHHhccCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHhhcCCCHHH
Q 003563 270 QWKNAIDHADLITEVADTLMSLGHSNSALKYYHFLETNAGTDNGYLYLKLAECYLSLKERAHAIMFFYKALDRFEDNIDA 349 (810)
Q Consensus 270 ~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~ 349 (810)
+...|. ++..+..+|.++...|++++|+.+|+++... .|.++..+..+|.++...|++++|+..++++++..|+...+
T Consensus 356 ~~~~~~-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~-~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~ 433 (899)
T TIGR02917 356 LGLDPD-DPAALSLLGEAYLALGDFEKAAEYLAKATEL-DPENAAARTQLGISKLSQGDPSEAIADLETAAQLDPELGRA 433 (899)
T ss_pred HhcCCC-CHHHHHHHHHHHHHCCCHHHHHHHHHHHHhc-CCCCHHHHHHHHHHHHhCCChHHHHHHHHHHHhhCCcchhh
Confidence 888775 7889999999999999999999999999977 78899999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHcCCHHHHHHhcCCCCCCCcccCCCCCCChhhhHHHHHHHHHHHHHhcCCchhHHhhhhhhhhhhHHHHHH
Q 003563 350 RLTLASLLLEEAKEEEAITLLSPPKDLDSLDMNSDKSNPWWLNEKIIMKLCHIYRAKGMPEDFVDAIFPLVCESLCVEAL 429 (810)
Q Consensus 350 ~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~~~~~~~ 429 (810)
...++..+...|++++|+..+++.....|.++ .++..+|.++...|++++|++.+.++++..+.....
T Consensus 434 ~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~------------~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~ 501 (899)
T TIGR02917 434 DLLLILSYLRSGQFDKALAAAKKLEKKQPDNA------------SLHNLLGAIYLGKGDLAKAREAFEKALSIEPDFFPA 501 (899)
T ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHHhCCCCc------------HHHHHHHHHHHhCCCHHHHHHHHHHHHhhCCCcHHH
Confidence 99999999999999999999999988888653 478899999999999999999999988654331111
Q ss_pred HHH-hhh--hhccchhhHHHHHhHhcCCCCCccccCCCCCCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccccCCC
Q 003563 430 RQK-VKV--KRRLTKGILQQRTKIYNNLPTDSILCGIRPAAPKSELLVAARARKKIQKKEALKEEKKALAKAAGVEWHSD 506 (810)
Q Consensus 430 ~~~-~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 506 (810)
... ... ...-..+......+.+.
T Consensus 502 ~~~la~~~~~~g~~~~A~~~~~~~~~------------------------------------------------------ 527 (899)
T TIGR02917 502 AANLARIDIQEGNPDDAIQRFEKVLT------------------------------------------------------ 527 (899)
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHH------------------------------------------------------
Confidence 000 000 00000000000000000
Q ss_pred CCCchhhhhccCCCCCCCCCCchhhHHHHHHHHHHHHhhhcHHHHHHHHHHHHhhhhccCChhHHHHHHHhhhhhhcccc
Q 003563 507 DTDDESQQEAFREPPLPNLLKNEENQCLIIDLCKALASLQRYEEASEIINLSMRLAYNILPLEKKEELRSLGAKMAYDST 586 (810)
Q Consensus 507 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~eA~~~~~~al~~~~~~~~~~~~~~l~~~~~~~~~~~~ 586 (810)
..|++..++..++.++...|++++|..+++.++...+. ........+.+....|
T Consensus 528 --------------------~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~------~~~~~~~l~~~~~~~~ 581 (899)
T TIGR02917 528 --------------------IDPKNLRAILALAGLYLRTGNEEEAVAWLEKAAELNPQ------EIEPALALAQYYLGKG 581 (899)
T ss_pred --------------------hCcCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcc------chhHHHHHHHHHHHCC
Confidence 12233445555555666666666666666655543321 1111122233333455
Q ss_pred CCchhHHHHHHHHHhCCCChhHhHHHHHHHHhhcccccccchhhHHHHHHHHhcCCCCCchhhhcchhhhccchHHHHHH
Q 003563 587 DPNHGFDCAKYILQLHPYSLSAWNCYYKVLSRMGKINSKHSKHSKFIRYLRAKYKDCVPPIIISGHQFTMASHHQDAARC 666 (810)
Q Consensus 587 ~~~~a~~~~r~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~g~~~~~~~~~~~Ai~~ 666 (810)
++++|...++.++...|.+...|..++.++...++ ...+...+.+.++..|+++..+...|.++...|+++.|+..
T Consensus 582 ~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~----~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~ 657 (899)
T TIGR02917 582 QLKKALAILNEAADAAPDSPEAWLMLGRAQLAAGD----LNKAVSSFKKLLALQPDSALALLLLADAYAVMKNYAKAITS 657 (899)
T ss_pred CHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHcCC----HHHHHHHHHHHHHhCCCChHHHHHHHHHHHHcCCHHHHHHH
Confidence 66666666666666566666666555555554444 23455555555555555555555556666666666666666
Q ss_pred HHHHHhhCCCChHHHHHHHHHHHHHHhCccccchhHHHHHHHHHHHHhHhhcCCCchhhhhHHHHHHHhChhhHHHHHHH
Q 003563 667 YLEAYKLLPENPLINLCVGSALINLALGFRLQNKHQCLAQGFAFLYNNLRLCEHSQEALYNIARACHHVGLVSLAASYYE 746 (810)
Q Consensus 667 y~~a~~~~p~~p~~~l~l~~~~~~~~~~r~~~~r~~~~~q~~~~l~~y~~~~~~~~e~~ynlgr~~~~lg~~~~Ai~~Y~ 746 (810)
|.++++.+|+++...+.++..+...+ ...+|+..+.+..+..+.+..++..+|+++...|.+..|+..|+
T Consensus 658 ~~~~~~~~~~~~~~~~~l~~~~~~~~----------~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~ 727 (899)
T TIGR02917 658 LKRALELKPDNTEAQIGLAQLLLAAK----------RTESAKKIAKSLQKQHPKAALGFELEGDLYLRQKDYPAAIQAYR 727 (899)
T ss_pred HHHHHhcCCCCHHHHHHHHHHHHHcC----------CHHHHHHHHHHHHhhCcCChHHHHHHHHHHHHCCCHHHHHHHHH
Confidence 66666666665555555555544221 12234444444444344444444445555555555555555555
Q ss_pred HHhccccccCCCCC-------CCCCCCcc--cccCCCCcccccHHHHHHHHHHHHhcCCHHHHHHHHHhhc
Q 003563 747 KVLAIKEKDYPIPK-------HNDKRPDL--MESGESGYCDLQREAAYNLHLIYKNSGAVDLARQLLKDYC 808 (810)
Q Consensus 747 ~vL~~~~~~~~~~~-------~~~~~~~~--~~~~~~~~~~l~~eaa~nl~~iy~~~g~~~~A~~~~~~~~ 808 (810)
++++..|++..... .+...... .... -...+-..++.++++.+|...|+++.|..++++-+
T Consensus 728 ~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~-l~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~ 797 (899)
T TIGR02917 728 KALKRAPSSQNAIKLHRALLASGNTAEAVKTLEAW-LKTHPNDAVLRTALAELYLAQKDYDKAIKHYRTVV 797 (899)
T ss_pred HHHhhCCCchHHHHHHHHHHHCCCHHHHHHHHHHH-HHhCCCCHHHHHHHHHHHHHCcCHHHHHHHHHHHH
Confidence 54444332100000 00000000 0000 00000115788899999999999999988887754
No 4
>PRK11447 cellulose synthase subunit BcsC; Provisional
Probab=100.00 E-value=1e-40 Score=399.59 Aligned_cols=657 Identities=14% Similarity=0.101 Sum_probs=473.0
Q ss_pred CHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCCCHHHH-----
Q 003563 30 SPGVTKMLGEASLQYAYGNFEQAISLLKEVVRLSPNLPETYNTLGLAHSALGNHKSAFDFYVIAAHLSPKDSALW----- 104 (810)
Q Consensus 30 ~~~~~~~l~~a~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~p~~~~~~----- 104 (810)
+.....++.++......++.+.|.+.+++++.++|++++++..++.++...|+.++|...++++.+++|+++.++
T Consensus 25 ~~~~~~Ll~q~~~~~~~~~~d~a~~~l~kl~~~~p~~p~~~~~~~~~~l~~g~~~~A~~~l~~l~~~~P~~~~~~~~~~~ 104 (1157)
T PRK11447 25 PTAQQQLLEQVRLGEATHREDLVRQSLYRLELIDPNNPDVIAARFRLLLRQGDSDGAQKLLDRLSQLAPDSNAYRSSRTT 104 (1157)
T ss_pred CCHHHHHHHHHHHHHhhCChHHHHHHHHHHHccCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHhhCCCChHHHHHHHH
Confidence 335566999999999999999999999999999999999999999999999999999999999999999998764
Q ss_pred -----------HHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHHH-HHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHH
Q 003563 105 -----------KQLLTFAVQKGDTAQAMYYIRQAIRAEPKDISL-RIHLASFYVEIGDYEKAAESYEQIQKLFPDNVDAT 172 (810)
Q Consensus 105 -----------~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~-~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~ 172 (810)
..+|.++...|++++|+..|+++++.+|.+... ...+..+....|++++|+..|+++++.+|+++.++
T Consensus 105 ~~~~~~~~~~~l~~A~ll~~~g~~~eA~~~~~~~l~~~p~~~~la~~y~~~~~~~~g~~~~A~~~L~~ll~~~P~~~~~~ 184 (1157)
T PRK11447 105 MLLSTPEGRQALQQARLLATTGRTEEALASYDKLFNGAPPELDLAVEYWRLVAKLPAQRPEAINQLQRLNADYPGNTGLR 184 (1157)
T ss_pred HHhcCCchhhHHHHHHHHHhCCCHHHHHHHHHHHccCCCCChHHHHHHHHHHhhCCccHHHHHHHHHHHHHhCCCCHHHH
Confidence 566778999999999999999999998887643 22233334456999999999999999999999999
Q ss_pred HHHHHHHHHcCChHHHHHHHHHHHhhCCCCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhcCC--------------
Q 003563 173 KTGAQLFLKCGQTARSIGILEEYLKVHPSDADLSVIDLLVAILMENNAYEKTLQHIEHAQIVRFSG-------------- 238 (810)
Q Consensus 173 ~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~-------------- 238 (810)
..+|.++...|++++|+..+++++...+.... +...........+....+...+...+..++..
T Consensus 185 ~~LA~ll~~~g~~~eAl~~l~~~~~~~~~~~~--aa~~~~~~l~~~~~~~~~~~~l~~~l~~~p~~~~~~~A~~~L~~~~ 262 (1157)
T PRK11447 185 NTLALLLFSSGRRDEGFAVLEQMAKSPAGRDA--AAQLWYGQIKDMPVSDASVAALQKYLQVFSDGDSVAAARSQLAEQQ 262 (1157)
T ss_pred HHHHHHHHccCCHHHHHHHHHHHhhCCCchHH--HHHHHHHHHhccCCChhhHHHHHHHHHHCCCchHHHHHHHHHHHHH
Confidence 99999999999999999999999875443221 10011111111222333333333333322111
Q ss_pred --CCCcHHHHHHHHHHHHhcCCHHHHHHHHHHhhccCCchhHhHHHHHHHHHHHcCCcHHHHHHHHHHHhccCCCCHH--
Q 003563 239 --KELPLKLKVKAGICYLRLGNMEKAEILFADLQWKNAIDHADLITEVADTLMSLGHSNSALKYYHFLETNAGTDNGY-- 314 (810)
Q Consensus 239 --~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~-- 314 (810)
...+.......|.++...|++++|+..|++++..+|. ++.++..+|.++...|++++|+..|++++.. .|++..
T Consensus 263 ~~~~dp~~~~~~~G~~~~~~g~~~~A~~~l~~aL~~~P~-~~~a~~~Lg~~~~~~g~~~eA~~~l~~Al~~-~p~~~~~~ 340 (1157)
T PRK11447 263 KQLADPAFRARAQGLAAVDSGQGGKAIPELQQAVRANPK-DSEALGALGQAYSQQGDRARAVAQFEKALAL-DPHSSNRD 340 (1157)
T ss_pred HhccCcchHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh-CCCccchh
Confidence 1122222335688999999999999999999999885 8899999999999999999999999999976 454321
Q ss_pred ------------HHHHHHHHHHHccCHHHHHHHHHHHHhhcCCCHHHHHHHHHHHHHcCCHHHHHHhcCCCCCCCcccCC
Q 003563 315 ------------LYLKLAECYLSLKERAHAIMFFYKALDRFEDNIDARLTLASLLLEEAKEEEAITLLSPPKDLDSLDMN 382 (810)
Q Consensus 315 ------------~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~ 382 (810)
.....|.++...|++++|+..|+++++.+|++..++..+|.++...|++++|++.|++++..+|.+.
T Consensus 341 ~~~~ll~~~~~~~~~~~g~~~~~~g~~~eA~~~~~~Al~~~P~~~~a~~~Lg~~~~~~g~~~eA~~~y~~aL~~~p~~~- 419 (1157)
T PRK11447 341 KWESLLKVNRYWLLIQQGDAALKANNLAQAERLYQQARQVDNTDSYAVLGLGDVAMARKDYAAAERYYQQALRMDPGNT- 419 (1157)
T ss_pred HHHHHHHhhhHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCH-
Confidence 2245588899999999999999999999999999999999999999999999999999999999764
Q ss_pred CCCCChhhhHHHHHHHHHHHHHhcCCchhHHhhhhhhhhhhHHHHHHHHHhhhhhccchhhHHHHHhHhcCCCCCccccC
Q 003563 383 SDKSNPWWLNEKIIMKLCHIYRAKGMPEDFVDAIFPLVCESLCVEALRQKVKVKRRLTKGILQQRTKIYNNLPTDSILCG 462 (810)
Q Consensus 383 ~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 462 (810)
.++..++.+|. .++.++|+..+..+....... ... ....+..+........
T Consensus 420 -----------~a~~~L~~l~~-~~~~~~A~~~l~~l~~~~~~~--~~~---~~~~l~~~~~~~~a~~------------ 470 (1157)
T PRK11447 420 -----------NAVRGLANLYR-QQSPEKALAFIASLSASQRRS--IDD---IERSLQNDRLAQQAEA------------ 470 (1157)
T ss_pred -----------HHHHHHHHHHH-hcCHHHHHHHHHhCCHHHHHH--HHH---HHHHhhhhHHHHHHHH------------
Confidence 47788888885 467899988776654331110 000 0000000000000000
Q ss_pred CCCCCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccccCCCCCCchhhhhccCCCCCCCCCCchhhHHHHHHHHHHH
Q 003563 463 IRPAAPKSELLVAARARKKIQKKEALKEEKKALAKAAGVEWHSDDTDDESQQEAFREPPLPNLLKNEENQCLIIDLCKAL 542 (810)
Q Consensus 463 ~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 542 (810)
....++..+ .......+ +-.+|++..+.+.++.++
T Consensus 471 -------------------~~~~g~~~e--A~~~~~~A------------------------l~~~P~~~~~~~~LA~~~ 505 (1157)
T PRK11447 471 -------------------LENQGKWAQ--AAELQRQR------------------------LALDPGSVWLTYRLAQDL 505 (1157)
T ss_pred -------------------HHHCCCHHH--HHHHHHHH------------------------HHhCCCCHHHHHHHHHHH
Confidence 000000000 00000000 012455566777888888
Q ss_pred HhhhcHHHHHHHHHHHHhhhhccCChhHHHHHHHhhhhhhccccCCchhHHHHHHHHHhCCCCh-hH---------hHHH
Q 003563 543 ASLQRYEEASEIINLSMRLAYNILPLEKKEELRSLGAKMAYDSTDPNHGFDCAKYILQLHPYSL-SA---------WNCY 612 (810)
Q Consensus 543 ~~~~~~~eA~~~~~~al~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~a~~~~r~~~~~~p~~~-~~---------~~~~ 612 (810)
...|++++|...++.++...+. .....+..+.+....++.++|...++.+.....+.. .. ....
T Consensus 506 ~~~G~~~~A~~~l~~al~~~P~------~~~~~~a~al~l~~~~~~~~Al~~l~~l~~~~~~~~~~~l~~~l~~~~~l~~ 579 (1157)
T PRK11447 506 RQAGQRSQADALMRRLAQQKPN------DPEQVYAYGLYLSGSDRDRAALAHLNTLPRAQWNSNIQELAQRLQSDQVLET 579 (1157)
T ss_pred HHcCCHHHHHHHHHHHHHcCCC------CHHHHHHHHHHHHhCCCHHHHHHHHHhCCchhcChhHHHHHHHHhhhHHHHH
Confidence 8888888888888887764332 111222233333456777788777766543211110 00 0001
Q ss_pred HHHHHhhcccccccchhhHHHHHHHHhcCCCCCchhhhcchhhhccchHHHHHHHHHHHhhCCCChHHHHHHHHHHHHHH
Q 003563 613 YKVLSRMGKINSKHSKHSKFIRYLRAKYKDCVPPIIISGHQFTMASHHQDAARCYLEAYKLLPENPLINLCVGSALINLA 692 (810)
Q Consensus 613 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~g~~~~~~~~~~~Ai~~y~~a~~~~p~~p~~~l~l~~~~~~~~ 692 (810)
...+...++ ...+. +.++.+|.++...+.+|.++...|+++.|+..|.++++.+|+++.+.+.+|.+|....
T Consensus 580 a~~l~~~G~----~~eA~----~~l~~~p~~~~~~~~La~~~~~~g~~~~A~~~y~~al~~~P~~~~a~~~la~~~~~~g 651 (1157)
T PRK11447 580 ANRLRDSGK----EAEAE----ALLRQQPPSTRIDLTLADWAQQRGDYAAARAAYQRVLTREPGNADARLGLIEVDIAQG 651 (1157)
T ss_pred HHHHHHCCC----HHHHH----HHHHhCCCCchHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCC
Confidence 112222222 11222 3455789998888899999999999999999999999999999999999999987543
Q ss_pred hCccccchhHHHHHHHHHHHHhHhhcCCCchhhhhHHHHHHHhChhhHHHHHHHHHhccccccCCCCCCCCCCCcccccC
Q 003563 693 LGFRLQNKHQCLAQGFAFLYNNLRLCEHSQEALYNIARACHHVGLVSLAASYYEKVLAIKEKDYPIPKHNDKRPDLMESG 772 (810)
Q Consensus 693 ~~r~~~~r~~~~~q~~~~l~~y~~~~~~~~e~~ynlgr~~~~lg~~~~Ai~~Y~~vL~~~~~~~~~~~~~~~~~~~~~~~ 772 (810)
...+|+..+.+..+..|.+..++.++|+++...|.+.+|+.+|+++++..|++.+
T Consensus 652 ----------~~~eA~~~l~~ll~~~p~~~~~~~~la~~~~~~g~~~eA~~~~~~al~~~~~~~~--------------- 706 (1157)
T PRK11447 652 ----------DLAAARAQLAKLPATANDSLNTQRRVALAWAALGDTAAAQRTFNRLIPQAKSQPP--------------- 706 (1157)
T ss_pred ----------CHHHHHHHHHHHhccCCCChHHHHHHHHHHHhCCCHHHHHHHHHHHhhhCccCCc---------------
Confidence 2447777787777778889999999999999999999999999999988764310
Q ss_pred CCCcccccHHHHHHHHHHHHhcCCHHHHHHHHHhhc
Q 003563 773 ESGYCDLQREAAYNLHLIYKNSGAVDLARQLLKDYC 808 (810)
Q Consensus 773 ~~~~~~l~~eaa~nl~~iy~~~g~~~~A~~~~~~~~ 808 (810)
. .-.......++-+|...|+++.|..++++-+
T Consensus 707 --~--~~~a~~~~~~a~~~~~~G~~~~A~~~y~~Al 738 (1157)
T PRK11447 707 --S--MESALVLRDAARFEAQTGQPQQALETYKDAM 738 (1157)
T ss_pred --c--hhhHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 0 0013445567999999999999999998875
No 5
>KOG4626 consensus O-linked N-acetylglucosamine transferase OGT [Carbohydrate transport and metabolism; Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=100.00 E-value=4.7e-43 Score=350.14 Aligned_cols=509 Identities=18% Similarity=0.134 Sum_probs=444.7
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCCCHHHHHHHHHHHHH
Q 003563 34 TKMLGEASLQYAYGNFEQAISLLKEVVRLSPNLPETYNTLGLAHSALGNHKSAFDFYVIAAHLSPKDSALWKQLLTFAVQ 113 (810)
Q Consensus 34 ~~~l~~a~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~p~~~~~~~~la~~~~~ 113 (810)
...+..|...++.|+|.+|.+.+..+-..+|.+.+.+..++.++++..++++....-..++...|...+++.++|.++..
T Consensus 49 ~~~l~lah~~yq~gd~~~a~~h~nmv~~~d~t~~~~llll~ai~~q~~r~d~s~a~~~~a~r~~~q~ae~ysn~aN~~ke 128 (966)
T KOG4626|consen 49 DDRLELAHRLYQGGDYKQAEKHCNMVGQEDPTNTERLLLLSAIFFQGSRLDKSSAGSLLAIRKNPQGAEAYSNLANILKE 128 (966)
T ss_pred hhHHHHHHHHHhccCHHHHHHHHhHhhccCCCcccceeeehhhhhcccchhhhhhhhhhhhhccchHHHHHHHHHHHHHH
Confidence 34788899999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCChHHHHHHHH
Q 003563 114 KGDTAQAMYYIRQAIRAEPKDISLRIHLASFYVEIGDYEKAAESYEQIQKLFPDNVDATKTGAQLFLKCGQTARSIGILE 193 (810)
Q Consensus 114 ~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~ 193 (810)
.|++++|+..|+.++++.|+..++|.++|.++...|+.+.|..+|..+++++|+...+...+|.++...|+..+|..+|.
T Consensus 129 rg~~~~al~~y~~aiel~p~fida~inla~al~~~~~~~~a~~~~~~alqlnP~l~ca~s~lgnLlka~Grl~ea~~cYl 208 (966)
T KOG4626|consen 129 RGQLQDALALYRAAIELKPKFIDAYINLAAALVTQGDLELAVQCFFEALQLNPDLYCARSDLGNLLKAEGRLEEAKACYL 208 (966)
T ss_pred hchHHHHHHHHHHHHhcCchhhHHHhhHHHHHHhcCCCcccHHHHHHHHhcCcchhhhhcchhHHHHhhcccchhHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHhhCCCCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhcCCCCCcHHHHHHHHHHHHhcCCHHHHHHHHHHhhccC
Q 003563 194 EYLKVHPSDADLSVIDLLVAILMENNAYEKTLQHIEHAQIVRFSGKELPLKLKVKAGICYLRLGNMEKAEILFADLQWKN 273 (810)
Q Consensus 194 ~~l~~~p~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~ 273 (810)
++++..|...- +|.+||.++..+|+...|+..|++++.+ +|...++++++|.+|...+.++.|+.+|.+++...
T Consensus 209 kAi~~qp~fAi--awsnLg~~f~~~Gei~~aiq~y~eAvkl----dP~f~dAYiNLGnV~ke~~~~d~Avs~Y~rAl~lr 282 (966)
T KOG4626|consen 209 KAIETQPCFAI--AWSNLGCVFNAQGEIWLAIQHYEEAVKL----DPNFLDAYINLGNVYKEARIFDRAVSCYLRALNLR 282 (966)
T ss_pred HHHhhCCceee--eehhcchHHhhcchHHHHHHHHHHhhcC----CCcchHHHhhHHHHHHHHhcchHHHHHHHHHHhcC
Confidence 99999998765 7999999999999999999999999999 88999999999999999999999999999999988
Q ss_pred CchhHhHHHHHHHHHHHcCCcHHHHHHHHHHHhccCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHhhcCCCHHHHHHH
Q 003563 274 AIDHADLITEVADTLMSLGHSNSALKYYHFLETNAGTDNGYLYLKLAECYLSLKERAHAIMFFYKALDRFEDNIDARLTL 353 (810)
Q Consensus 274 ~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l 353 (810)
|. ...++-++|.+|.++|..+-|+..|+++++. .|.-+.++.++|.++...|+..+|+.+|.+++.+.|+++++..+|
T Consensus 283 pn-~A~a~gNla~iYyeqG~ldlAI~~Ykral~~-~P~F~~Ay~NlanALkd~G~V~ea~~cYnkaL~l~p~hadam~NL 360 (966)
T KOG4626|consen 283 PN-HAVAHGNLACIYYEQGLLDLAIDTYKRALEL-QPNFPDAYNNLANALKDKGSVTEAVDCYNKALRLCPNHADAMNNL 360 (966)
T ss_pred Cc-chhhccceEEEEeccccHHHHHHHHHHHHhc-CCCchHHHhHHHHHHHhccchHHHHHHHHHHHHhCCccHHHHHHH
Confidence 85 8999999999999999999999999999988 899999999999999999999999999999999999999999999
Q ss_pred HHHHHHcCCHHHHHHhcCCCCCCCcccCCCCCCChhhhHHHHHHHHHHHHHhcCCchhHHhhhhhhhhhhHHHHHHHHHh
Q 003563 354 ASLLLEEAKEEEAITLLSPPKDLDSLDMNSDKSNPWWLNEKIIMKLCHIYRAKGMPEDFVDAIFPLVCESLCVEALRQKV 433 (810)
Q Consensus 354 a~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~~ 433 (810)
|.+|.++|++++|..+|+++++..|.-+ .+..+||.+|.++|++++|+..|+++++-.
T Consensus 361 gni~~E~~~~e~A~~ly~~al~v~p~~a------------aa~nNLa~i~kqqgnl~~Ai~~YkealrI~---------- 418 (966)
T KOG4626|consen 361 GNIYREQGKIEEATRLYLKALEVFPEFA------------AAHNNLASIYKQQGNLDDAIMCYKEALRIK---------- 418 (966)
T ss_pred HHHHHHhccchHHHHHHHHHHhhChhhh------------hhhhhHHHHHHhcccHHHHHHHHHHHHhcC----------
Confidence 9999999999999999999999999764 588999999999999999999998877541
Q ss_pred hhhhccchhhHHHHHhHhcCCCCCccccCCCCCCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccccCCCCCCchhh
Q 003563 434 KVKRRLTKGILQQRTKIYNNLPTDSILCGIRPAAPKSELLVAARARKKIQKKEALKEEKKALAKAAGVEWHSDDTDDESQ 513 (810)
Q Consensus 434 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 513 (810)
T Consensus 419 -------------------------------------------------------------------------------- 418 (966)
T KOG4626|consen 419 -------------------------------------------------------------------------------- 418 (966)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred hhccCCCCCCCCCCchhhHHHHHHHHHHHHhhhcHHHHHHHHHHHHhhhhccCChhHHHHHHHhhhhhhccccCCchhHH
Q 003563 514 QEAFREPPLPNLLKNEENQCLIIDLCKALASLQRYEEASEIINLSMRLAYNILPLEKKEELRSLGAKMAYDSTDPNHGFD 593 (810)
Q Consensus 514 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~eA~~~~~~al~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~a~~ 593 (810)
|..-+.+.+++.++...|+..+|++.|.+|+.+++. ......-++++.-.+|+..+|+.
T Consensus 419 ---------------P~fAda~~NmGnt~ke~g~v~~A~q~y~rAI~~nPt------~AeAhsNLasi~kDsGni~~AI~ 477 (966)
T KOG4626|consen 419 ---------------PTFADALSNMGNTYKEMGDVSAAIQCYTRAIQINPT------FAEAHSNLASIYKDSGNIPEAIQ 477 (966)
T ss_pred ---------------chHHHHHHhcchHHHHhhhHHHHHHHHHHHHhcCcH------HHHHHhhHHHHhhccCCcHHHHH
Confidence 122346667888999999999999999999976544 44444455677778999999999
Q ss_pred HHHHHHHhCCCChhHhHHHHHHHHhhcccccccc---hhhHHHHHHHH--hcCCCCCch-hhh--cchhhhccchHHHHH
Q 003563 594 CAKYILQLHPYSLSAWNCYYKVLSRMGKINSKHS---KHSKFIRYLRA--KYKDCVPPI-IIS--GHQFTMASHHQDAAR 665 (810)
Q Consensus 594 ~~r~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~--~~p~~~~~~-~~~--g~~~~~~~~~~~Ai~ 665 (810)
.++..+...|+.+.++--+...+.-.++|..... +-.....+++. +.|.-.|-+ +++ -|++...-.-+.|--
T Consensus 478 sY~~aLklkPDfpdA~cNllh~lq~vcdw~D~d~~~~kl~sivrdql~~~rlpsvhP~hsm~ypl~~~~~~aia~k~a~~ 557 (966)
T KOG4626|consen 478 SYRTALKLKPDFPDAYCNLLHCLQIVCDWTDYDKRMKKLVSIVRDQLEKNRLPSVHPHHSMLYPLSHILRKAIAAKHANL 557 (966)
T ss_pred HHHHHHccCCCCchhhhHHHHHHHHHhcccchHHHHHHHHHHHHHHHhhhcCCccCcccccccccchHHHHHHHHHHhhh
Confidence 9999999999999988655555555566543211 22333445553 445544433 222 444433333345555
Q ss_pred HHHHHHhh
Q 003563 666 CYLEAYKL 673 (810)
Q Consensus 666 ~y~~a~~~ 673 (810)
.+.++..+
T Consensus 558 c~~~~~~~ 565 (966)
T KOG4626|consen 558 CLDKVHVL 565 (966)
T ss_pred hHHHHHhc
Confidence 55555443
No 6
>KOG4626 consensus O-linked N-acetylglucosamine transferase OGT [Carbohydrate transport and metabolism; Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=100.00 E-value=4.7e-42 Score=343.01 Aligned_cols=379 Identities=17% Similarity=0.153 Sum_probs=363.0
Q ss_pred CCCCHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCCCHHHHHH
Q 003563 27 NKLSPGVTKMLGEASLQYAYGNFEQAISLLKEVVRLSPNLPETYNTLGLAHSALGNHKSAFDFYVIAAHLSPKDSALWKQ 106 (810)
Q Consensus 27 ~~~~~~~~~~l~~a~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~p~~~~~~~~ 106 (810)
+..+.-...+-..|+.+..+|++++|+..|+.++++.|+..++|..+|.++...|+.+.|..+|..+++++|+...+...
T Consensus 110 r~~~q~ae~ysn~aN~~kerg~~~~al~~y~~aiel~p~fida~inla~al~~~~~~~~a~~~~~~alqlnP~l~ca~s~ 189 (966)
T KOG4626|consen 110 RKNPQGAEAYSNLANILKERGQLQDALALYRAAIELKPKFIDAYINLAAALVTQGDLELAVQCFFEALQLNPDLYCARSD 189 (966)
T ss_pred hccchHHHHHHHHHHHHHHhchHHHHHHHHHHHHhcCchhhHHHhhHHHHHHhcCCCcccHHHHHHHHhcCcchhhhhcc
Confidence 34455555555699999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHcCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCChH
Q 003563 107 LLTFAVQKGDTAQAMYYIRQAIRAEPKDISLRIHLASFYVEIGDYEKAAESYEQIQKLFPDNVDATKTGAQLFLKCGQTA 186 (810)
Q Consensus 107 la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~ 186 (810)
+|.++..+|+..+|..+|.++++..|....+|.++|.++..+|+...|+..|+++++++|...+++++||.+|...+.++
T Consensus 190 lgnLlka~Grl~ea~~cYlkAi~~qp~fAiawsnLg~~f~~~Gei~~aiq~y~eAvkldP~f~dAYiNLGnV~ke~~~~d 269 (966)
T KOG4626|consen 190 LGNLLKAEGRLEEAKACYLKAIETQPCFAIAWSNLGCVFNAQGEIWLAIQHYEEAVKLDPNFLDAYINLGNVYKEARIFD 269 (966)
T ss_pred hhHHHHhhcccchhHHHHHHHHhhCCceeeeehhcchHHhhcchHHHHHHHHHHhhcCCCcchHHHhhHHHHHHHHhcch
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHhhCCCCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhcCCCCCcHHHHHHHHHHHHhcCCHHHHHHHH
Q 003563 187 RSIGILEEYLKVHPSDADLSVIDLLVAILMENNAYEKTLQHIEHAQIVRFSGKELPLKLKVKAGICYLRLGNMEKAEILF 266 (810)
Q Consensus 187 ~A~~~~~~~l~~~p~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~ 266 (810)
.|+.+|.+++...|.+.. ++-++|.+|..+|..+-|+..|+++++. .|...+++.++|.++...|+..+|..+|
T Consensus 270 ~Avs~Y~rAl~lrpn~A~--a~gNla~iYyeqG~ldlAI~~Ykral~~----~P~F~~Ay~NlanALkd~G~V~ea~~cY 343 (966)
T KOG4626|consen 270 RAVSCYLRALNLRPNHAV--AHGNLACIYYEQGLLDLAIDTYKRALEL----QPNFPDAYNNLANALKDKGSVTEAVDCY 343 (966)
T ss_pred HHHHHHHHHHhcCCcchh--hccceEEEEeccccHHHHHHHHHHHHhc----CCCchHHHhHHHHHHHhccchHHHHHHH
Confidence 999999999999999887 7889999999999999999999999999 8899999999999999999999999999
Q ss_pred HHhhccCCchhHhHHHHHHHHHHHcCCcHHHHHHHHHHHhccCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHhhcCCC
Q 003563 267 ADLQWKNAIDHADLITEVADTLMSLGHSNSALKYYHFLETNAGTDNGYLYLKLAECYLSLKERAHAIMFFYKALDRFEDN 346 (810)
Q Consensus 267 ~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~ 346 (810)
.+++...|. .+++..++|.++.+.|.+++|..+|.+++.. .|.-..++.++|.+|.++|++++|+.+|+.++.+.|..
T Consensus 344 nkaL~l~p~-hadam~NLgni~~E~~~~e~A~~ly~~al~v-~p~~aaa~nNLa~i~kqqgnl~~Ai~~YkealrI~P~f 421 (966)
T KOG4626|consen 344 NKALRLCPN-HADAMNNLGNIYREQGKIEEATRLYLKALEV-FPEFAAAHNNLASIYKQQGNLDDAIMCYKEALRIKPTF 421 (966)
T ss_pred HHHHHhCCc-cHHHHHHHHHHHHHhccchHHHHHHHHHHhh-ChhhhhhhhhHHHHHHhcccHHHHHHHHHHHHhcCchH
Confidence 999999985 9999999999999999999999999999987 89999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHhcCCCCCCCcccCCCCCCChhhhHHHHHHHHHHHHHhcCCchhHHhhhhhhhhhhHH
Q 003563 347 IDARLTLASLLLEEAKEEEAITLLSPPKDLDSLDMNSDKSNPWWLNEKIIMKLCHIYRAKGMPEDFVDAIFPLVCESLC 425 (810)
Q Consensus 347 ~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~~~ 425 (810)
.+++.++|..|..+|+.+.|+..|.+++..+|.-+ ++..+||.+|...|+..+|+..|+..++-.++
T Consensus 422 Ada~~NmGnt~ke~g~v~~A~q~y~rAI~~nPt~A------------eAhsNLasi~kDsGni~~AI~sY~~aLklkPD 488 (966)
T KOG4626|consen 422 ADALSNMGNTYKEMGDVSAAIQCYTRAIQINPTFA------------EAHSNLASIYKDSGNIPEAIQSYRTALKLKPD 488 (966)
T ss_pred HHHHHhcchHHHHhhhHHHHHHHHHHHHhcCcHHH------------HHHhhHHHHhhccCCcHHHHHHHHHHHccCCC
Confidence 99999999999999999999999999999999754 69999999999999999999999999876543
No 7
>KOG2002 consensus TPR-containing nuclear phosphoprotein that regulates K(+) uptake [Inorganic ion transport and metabolism]
Probab=100.00 E-value=9.9e-38 Score=329.36 Aligned_cols=609 Identities=17% Similarity=0.146 Sum_probs=496.6
Q ss_pred CHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHcCCh--HHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCHHHHHHHHH
Q 003563 48 NFEQAISLLKEVVRLSPNLPETYNTLGLAHSALGNH--KSAFDFYVIAAHLSPKDSALWKQLLTFAVQKGDTAQAMYYIR 125 (810)
Q Consensus 48 ~~~~A~~~~~~~l~~~p~~~~~~~~l~~~~~~~g~~--~~A~~~~~~a~~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~ 125 (810)
.+..|..+|..+-.++-.....+...+..+...|+. +.|...|..++...|++..++...|.+.+..|+|..|+.+|+
T Consensus 109 ~~~~at~~~~~A~ki~m~~~~~l~~~~~~~l~~~~~~~~~A~a~F~~Vl~~sp~Nil~LlGkA~i~ynkkdY~~al~yyk 188 (1018)
T KOG2002|consen 109 LFDKATLLFDLADKIDMYEDSHLLVQRGFLLLEGDKSMDDADAQFHFVLKQSPDNILALLGKARIAYNKKDYRGALKYYK 188 (1018)
T ss_pred HHHHHHHHhhHHHHhhccCcchhhhhhhhhhhcCCccHHHHHHHHHHHHhhCCcchHHHHHHHHHHhccccHHHHHHHHH
Confidence 356677788887777766666777777777777776 899999999999999999999999999999999999999999
Q ss_pred HHHHcCCCC-HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCC---hHHHHHHHHHHHhhCCC
Q 003563 126 QAIRAEPKD-ISLRIHLASFYVEIGDYEKAAESYEQIQKLFPDNVDATKTGAQLFLKCGQ---TARSIGILEEYLKVHPS 201 (810)
Q Consensus 126 ~al~~~p~~-~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~---~~~A~~~~~~~l~~~p~ 201 (810)
+++.++|.. ++....+|.|+.++|+.+.|+..|.++++++|.+..++..||.+-....+ +..+...+.++...+|.
T Consensus 189 ~al~inp~~~aD~rIgig~Cf~kl~~~~~a~~a~~ralqLdp~~v~alv~L~~~~l~~~d~~s~~~~~~ll~~ay~~n~~ 268 (1018)
T KOG2002|consen 189 KALRINPACKADVRIGIGHCFWKLGMSEKALLAFERALQLDPTCVSALVALGEVDLNFNDSDSYKKGVQLLQRAYKENNE 268 (1018)
T ss_pred HHHhcCcccCCCccchhhhHHHhccchhhHHHHHHHHHhcChhhHHHHHHHHHHHHHccchHHHHHHHHHHHHHHhhcCC
Confidence 999999865 67788999999999999999999999999999999999999988766554 66889999999999999
Q ss_pred CCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhcCCCCCcHHHHHHHHHHHHhcCCHHHHHHHHHHhhccCCchhHhHH
Q 003563 202 DADLSVIDLLVAILMENNAYEKTLQHIEHAQIVRFSGKELPLKLKVKAGICYLRLGNMEKAEILFADLQWKNAIDHADLI 281 (810)
Q Consensus 202 ~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~ 281 (810)
+|. +++.|+..++..|+|..+..+...++.. ....+...+.++.+|.++..+|++++|..+|.+++..++....-.+
T Consensus 269 nP~--~l~~LAn~fyfK~dy~~v~~la~~ai~~-t~~~~~~aes~Y~~gRs~Ha~Gd~ekA~~yY~~s~k~~~d~~~l~~ 345 (1018)
T KOG2002|consen 269 NPV--ALNHLANHFYFKKDYERVWHLAEHAIKN-TENKSIKAESFYQLGRSYHAQGDFEKAFKYYMESLKADNDNFVLPL 345 (1018)
T ss_pred CcH--HHHHHHHHHhhcccHHHHHHHHHHHHHh-hhhhHHHHHHHHHHHHHHHhhccHHHHHHHHHHHHccCCCCccccc
Confidence 998 8899999999999999999999999876 2233455677999999999999999999999999988886557778
Q ss_pred HHHHHHHHHcCCcHHHHHHHHHHHhccCCCCHHHHHHHHHHHHHcc----CHHHHHHHHHHHHhhcCCCHHHHHHHHHHH
Q 003563 282 TEVADTLMSLGHSNSALKYYHFLETNAGTDNGYLYLKLAECYLSLK----ERAHAIMFFYKALDRFEDNIDARLTLASLL 357 (810)
Q Consensus 282 ~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~la~~~~~~g----~~~~A~~~~~~al~~~p~~~~~~~~la~~~ 357 (810)
+.+|..++..|+++.|..+|+++... .|++..+...+|.+|...+ ..+.|..+..++++..|.+.++|..++.++
T Consensus 346 ~GlgQm~i~~~dle~s~~~fEkv~k~-~p~~~etm~iLG~Lya~~~~~~~~~d~a~~~l~K~~~~~~~d~~a~l~laql~ 424 (1018)
T KOG2002|consen 346 VGLGQMYIKRGDLEESKFCFEKVLKQ-LPNNYETMKILGCLYAHSAKKQEKRDKASNVLGKVLEQTPVDSEAWLELAQLL 424 (1018)
T ss_pred cchhHHHHHhchHHHHHHHHHHHHHh-CcchHHHHHHHHhHHHhhhhhhHHHHHHHHHHHHHHhcccccHHHHHHHHHHH
Confidence 99999999999999999999999976 8999999999999999886 578899999999999999999999999999
Q ss_pred HHcCCHHHHHHhcCCCCCCCcccCCCCCCChhhhHHHHHHHHHHHHHhcCCchhHHhhhhhhhhhhHHHHHHHHHhhhhh
Q 003563 358 LEEAKEEEAITLLSPPKDLDSLDMNSDKSNPWWLNEKIIMKLCHIYRAKGMPEDFVDAIFPLVCESLCVEALRQKVKVKR 437 (810)
Q Consensus 358 ~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~~~~~~ 437 (810)
....-+. ++.+|..|++.-...... ..++++.++|..++..|++.+|...+..++..-....
T Consensus 425 e~~d~~~-sL~~~~~A~d~L~~~~~~-------ip~E~LNNvaslhf~~g~~~~A~~~f~~A~~~~~~~~---------- 486 (1018)
T KOG2002|consen 425 EQTDPWA-SLDAYGNALDILESKGKQ-------IPPEVLNNVASLHFRLGNIEKALEHFKSALGKLLEVA---------- 486 (1018)
T ss_pred HhcChHH-HHHHHHHHHHHHHHcCCC-------CCHHHHHhHHHHHHHhcChHHHHHHHHHHhhhhhhhc----------
Confidence 7654444 477777766432211110 1247899999999999999999999987765511000
Q ss_pred ccchhhHHHHHhHhcCCCCCccccCCCCCCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccccCCCCCCchhhhhcc
Q 003563 438 RLTKGILQQRTKIYNNLPTDSILCGIRPAAPKSELLVAARARKKIQKKEALKEEKKALAKAAGVEWHSDDTDDESQQEAF 517 (810)
Q Consensus 438 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 517 (810)
. .| +.
T Consensus 487 ----------------n----------------------------------~d--------------------e~----- 491 (1018)
T KOG2002|consen 487 ----------------N----------------------------------KD--------------------EG----- 491 (1018)
T ss_pred ----------------C----------------------------------cc--------------------cc-----
Confidence 0 00 00
Q ss_pred CCCCCCCCCCchhhHHHHHHHHHHHHhhhcHHHHHHHHHHHHhhhhccCChhHHHHHHHhhhhhhccccCCchhHHHHHH
Q 003563 518 REPPLPNLLKNEENQCLIIDLCKALASLQRYEEASEIINLSMRLAYNILPLEKKEELRSLGAKMAYDSTDPNHGFDCAKY 597 (810)
Q Consensus 518 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~eA~~~~~~al~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~a~~~~r~ 597 (810)
.. -...+-+++++++...++++.|.+.|...+...+. -....++.. .++...+...+|+..++.
T Consensus 492 ---------~~-~~lt~~YNlarl~E~l~~~~~A~e~Yk~Ilkehp~----YId~ylRl~--~ma~~k~~~~ea~~~lk~ 555 (1018)
T KOG2002|consen 492 ---------KS-TNLTLKYNLARLLEELHDTEVAEEMYKSILKEHPG----YIDAYLRLG--CMARDKNNLYEASLLLKD 555 (1018)
T ss_pred ---------cc-chhHHHHHHHHHHHhhhhhhHHHHHHHHHHHHCch----hHHHHHHhh--HHHHhccCcHHHHHHHHH
Confidence 00 12456778999999999999999999999864432 233444432 233445778899999999
Q ss_pred HHHhCCCChhHhHHHHHHHHhhcccccccchhhHHHHHHHHhcC--CCCCchhhhcchhhhc------------cchHHH
Q 003563 598 ILQLHPYSLSAWNCYYKVLSRMGKINSKHSKHSKFIRYLRAKYK--DCVPPIIISGHQFTMA------------SHHQDA 663 (810)
Q Consensus 598 ~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p--~~~~~~~~~g~~~~~~------------~~~~~A 663 (810)
.++.+..++.+|.+++........ ...+.+-+.+++++-. .+...++-+||+++.+ +.+..|
T Consensus 556 ~l~~d~~np~arsl~G~~~l~k~~----~~~a~k~f~~i~~~~~~~~D~YsliaLGN~~~~~l~~~~rn~ek~kk~~~KA 631 (1018)
T KOG2002|consen 556 ALNIDSSNPNARSLLGNLHLKKSE----WKPAKKKFETILKKTSTKTDAYSLIALGNVYIQALHNPSRNPEKEKKHQEKA 631 (1018)
T ss_pred HHhcccCCcHHHHHHHHHHHhhhh----hcccccHHHHHHhhhccCCchhHHHHhhHHHHHHhcccccChHHHHHHHHHH
Confidence 999999999999999866555444 2355665555555432 2344556779988754 788999
Q ss_pred HHHHHHHHhhCCCChHHHHHHHHHHHHHHhCccccchhHHHHHHHHHHHHhHhhcCCCchhhhhHHHHHHHhChhhHHHH
Q 003563 664 ARCYLEAYKLLPENPLINLCVGSALINLALGFRLQNKHQCLAQGFAFLYNNLRLCEHSQEALYNIARACHHVGLVSLAAS 743 (810)
Q Consensus 664 i~~y~~a~~~~p~~p~~~l~l~~~~~~~~~~r~~~~r~~~~~q~~~~l~~y~~~~~~~~e~~ynlgr~~~~lg~~~~Ai~ 743 (810)
+..|.++++.+|.|-.+..+||+++.+.+ +...|...|.+.++.-.++..|+.|+|+||.-.|++..||+
T Consensus 632 lq~y~kvL~~dpkN~yAANGIgiVLA~kg----------~~~~A~dIFsqVrEa~~~~~dv~lNlah~~~e~~qy~~AIq 701 (1018)
T KOG2002|consen 632 LQLYGKVLRNDPKNMYAANGIGIVLAEKG----------RFSEARDIFSQVREATSDFEDVWLNLAHCYVEQGQYRLAIQ 701 (1018)
T ss_pred HHHHHHHHhcCcchhhhccchhhhhhhcc----------CchHHHHHHHHHHHHHhhCCceeeeHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999987654 25578888888888666789999999999999999999999
Q ss_pred HHHHHhccccccCCCCCCCCCCCcccccCCCCcccccHHHHHHHHHHHHhcCCHHHHHHHHHh
Q 003563 744 YYEKVLAIKEKDYPIPKHNDKRPDLMESGESGYCDLQREAAYNLHLIYKNSGAVDLARQLLKD 806 (810)
Q Consensus 744 ~Y~~vL~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~eaa~nl~~iy~~~g~~~~A~~~~~~ 806 (810)
.|++||...-.. =+++...-|+-+|...|.+.+|.+.+-+
T Consensus 702 mYe~~lkkf~~~-----------------------~~~~vl~~Lara~y~~~~~~eak~~ll~ 741 (1018)
T KOG2002|consen 702 MYENCLKKFYKK-----------------------NRSEVLHYLARAWYEAGKLQEAKEALLK 741 (1018)
T ss_pred HHHHHHHHhccc-----------------------CCHHHHHHHHHHHHHhhhHHHHHHHHHH
Confidence 999999875211 1378889999999999999999877654
No 8
>PRK11447 cellulose synthase subunit BcsC; Provisional
Probab=100.00 E-value=2.2e-37 Score=371.04 Aligned_cols=620 Identities=13% Similarity=0.059 Sum_probs=459.2
Q ss_pred CHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHHH----------------HHHHHHHHHcCChHHHHHHHHHH
Q 003563 30 SPGVTKMLGEASLQYAYGNFEQAISLLKEVVRLSPNLPETY----------------NTLGLAHSALGNHKSAFDFYVIA 93 (810)
Q Consensus 30 ~~~~~~~l~~a~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~----------------~~l~~~~~~~g~~~~A~~~~~~a 93 (810)
|.+...++..+.++...|++++|...++++++.+|+++.++ ..+|.++...|++++|+..|+++
T Consensus 59 p~~p~~~~~~~~~~l~~g~~~~A~~~l~~l~~~~P~~~~~~~~~~~~~~~~~~~~~~l~~A~ll~~~g~~~eA~~~~~~~ 138 (1157)
T PRK11447 59 PNNPDVIAARFRLLLRQGDSDGAQKLLDRLSQLAPDSNAYRSSRTTMLLSTPEGRQALQQARLLATTGRTEEALASYDKL 138 (1157)
T ss_pred CCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHhhCCCChHHHHHHHHHHhcCCchhhHHHHHHHHHhCCCHHHHHHHHHHH
Confidence 33455667888999999999999999999999999998764 56677899999999999999999
Q ss_pred HhcCCCCHHH-HHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHH
Q 003563 94 AHLSPKDSAL-WKQLLTFAVQKGDTAQAMYYIRQAIRAEPKDISLRIHLASFYVEIGDYEKAAESYEQIQKLFPDNVDAT 172 (810)
Q Consensus 94 ~~~~p~~~~~-~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~ 172 (810)
+..+|.+... ...+..+....|++++|+..++++++.+|+++.++..+|.++...|++++|+..+++++...+....+.
T Consensus 139 l~~~p~~~~la~~y~~~~~~~~g~~~~A~~~L~~ll~~~P~~~~~~~~LA~ll~~~g~~~eAl~~l~~~~~~~~~~~~aa 218 (1157)
T PRK11447 139 FNGAPPELDLAVEYWRLVAKLPAQRPEAINQLQRLNADYPGNTGLRNTLALLLFSSGRRDEGFAVLEQMAKSPAGRDAAA 218 (1157)
T ss_pred ccCCCCChHHHHHHHHHHhhCCccHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHhhCCCchHHHH
Confidence 9998887643 222333344569999999999999999999999999999999999999999999999987654433221
Q ss_pred HHHHHHHHHcCChHHHHHHHHHHHhhCCCCCCh------------------HHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Q 003563 173 KTGAQLFLKCGQTARSIGILEEYLKVHPSDADL------------------SVIDLLVAILMENNAYEKTLQHIEHAQIV 234 (810)
Q Consensus 173 ~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~------------------~~~~~la~~~~~~g~~~~A~~~~~~~~~~ 234 (810)
..........+....+...+...+...|+.... .....+|.++...|++++|+..|++++..
T Consensus 219 ~~~~~~l~~~~~~~~~~~~l~~~l~~~p~~~~~~~A~~~L~~~~~~~~dp~~~~~~~G~~~~~~g~~~~A~~~l~~aL~~ 298 (1157)
T PRK11447 219 QLWYGQIKDMPVSDASVAALQKYLQVFSDGDSVAAARSQLAEQQKQLADPAFRARAQGLAAVDSGQGGKAIPELQQAVRA 298 (1157)
T ss_pred HHHHHHHhccCCChhhHHHHHHHHHHCCCchHHHHHHHHHHHHHHhccCcchHHHHHHHHHHHCCCHHHHHHHHHHHHHh
Confidence 111111222334444555555444444443210 01234588889999999999999999998
Q ss_pred hcCCCCCcHHHHHHHHHHHHhcCCHHHHHHHHHHhhccCCchhH-------------hHHHHHHHHHHHcCCcHHHHHHH
Q 003563 235 RFSGKELPLKLKVKAGICYLRLGNMEKAEILFADLQWKNAIDHA-------------DLITEVADTLMSLGHSNSALKYY 301 (810)
Q Consensus 235 ~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~-------------~~~~~la~~~~~~~~~~~A~~~~ 301 (810)
.|....++..+|.++...|++++|+.+|++++...|.... ......|.++...|++++|+..|
T Consensus 299 ----~P~~~~a~~~Lg~~~~~~g~~~eA~~~l~~Al~~~p~~~~~~~~~~ll~~~~~~~~~~~g~~~~~~g~~~eA~~~~ 374 (1157)
T PRK11447 299 ----NPKDSEALGALGQAYSQQGDRARAVAQFEKALALDPHSSNRDKWESLLKVNRYWLLIQQGDAALKANNLAQAERLY 374 (1157)
T ss_pred ----CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCccchhHHHHHHHhhhHHHHHHHHHHHHHCCCHHHHHHHH
Confidence 6777899999999999999999999999999887764211 12235588889999999999999
Q ss_pred HHHHhccCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHhhcCCCHHHHHHHHHHHHHcCCHHHHHHhcCCCCCCCcccC
Q 003563 302 HFLETNAGTDNGYLYLKLAECYLSLKERAHAIMFFYKALDRFEDNIDARLTLASLLLEEAKEEEAITLLSPPKDLDSLDM 381 (810)
Q Consensus 302 ~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~ 381 (810)
++++.. .|.++.++..+|.++...|++++|++.|+++++.+|++..++..++.++. .+++++|+.++++.....+...
T Consensus 375 ~~Al~~-~P~~~~a~~~Lg~~~~~~g~~~eA~~~y~~aL~~~p~~~~a~~~L~~l~~-~~~~~~A~~~l~~l~~~~~~~~ 452 (1157)
T PRK11447 375 QQARQV-DNTDSYAVLGLGDVAMARKDYAAAERYYQQALRMDPGNTNAVRGLANLYR-QQSPEKALAFIASLSASQRRSI 452 (1157)
T ss_pred HHHHHh-CCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHH-hcCHHHHHHHHHhCCHHHHHHH
Confidence 999987 88899999999999999999999999999999999999999999999885 4678999998876554433211
Q ss_pred CCCCCChhhhHHHHHHHHHHHHHhcCCchhHHhhhhhhhhhhHHHHHHHHHhhhhhccchhhHHHHHhHhcCCCCCcccc
Q 003563 382 NSDKSNPWWLNEKIIMKLCHIYRAKGMPEDFVDAIFPLVCESLCVEALRQKVKVKRRLTKGILQQRTKIYNNLPTDSILC 461 (810)
Q Consensus 382 ~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 461 (810)
. ..........+..+|.++...|++++|++.++++++..++.....-.. -..... .
T Consensus 453 ~---~~~~~l~~~~~~~~a~~~~~~g~~~eA~~~~~~Al~~~P~~~~~~~~L--------------A~~~~~-------~ 508 (1157)
T PRK11447 453 D---DIERSLQNDRLAQQAEALENQGKWAQAAELQRQRLALDPGSVWLTYRL--------------AQDLRQ-------A 508 (1157)
T ss_pred H---HHHHHhhhhHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHH--------------HHHHHH-------c
Confidence 0 000011224567889999999999999999999987754421110000 000000 0
Q ss_pred CCCCCCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccccCCCCCCchhhhhccCCCCCCCCCCchhhHHHHHHHHHH
Q 003563 462 GIRPAAPKSELLVAARARKKIQKKEALKEEKKALAKAAGVEWHSDDTDDESQQEAFREPPLPNLLKNEENQCLIIDLCKA 541 (810)
Q Consensus 462 ~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 541 (810)
| ....+. ..+. ..+ -..|++....+.++..
T Consensus 509 G--------~~~~A~---~~l~---------------~al------------------------~~~P~~~~~~~a~al~ 538 (1157)
T PRK11447 509 G--------QRSQAD---ALMR---------------RLA------------------------QQKPNDPEQVYAYGLY 538 (1157)
T ss_pred C--------CHHHHH---HHHH---------------HHH------------------------HcCCCCHHHHHHHHHH
Confidence 0 000000 0000 000 0134555667778888
Q ss_pred HHhhhcHHHHHHHHHHHHhhhhccCChhHH-------HHHHHhhhhhhccccCCchhHHHHHHHHHhCCCChhHhHHHHH
Q 003563 542 LASLQRYEEASEIINLSMRLAYNILPLEKK-------EELRSLGAKMAYDSTDPNHGFDCAKYILQLHPYSLSAWNCYYK 614 (810)
Q Consensus 542 ~~~~~~~~eA~~~~~~al~~~~~~~~~~~~-------~~l~~~~~~~~~~~~~~~~a~~~~r~~~~~~p~~~~~~~~~~~ 614 (810)
+...++.++|+.+++.+.... ..+... .......+.+....|++++|..+++ ..|.++..+..+..
T Consensus 539 l~~~~~~~~Al~~l~~l~~~~---~~~~~~~l~~~l~~~~~l~~a~~l~~~G~~~eA~~~l~----~~p~~~~~~~~La~ 611 (1157)
T PRK11447 539 LSGSDRDRAALAHLNTLPRAQ---WNSNIQELAQRLQSDQVLETANRLRDSGKEAEAEALLR----QQPPSTRIDLTLAD 611 (1157)
T ss_pred HHhCCCHHHHHHHHHhCCchh---cChhHHHHHHHHhhhHHHHHHHHHHHCCCHHHHHHHHH----hCCCCchHHHHHHH
Confidence 889999999999988754211 111100 0111123344556789888888766 68999999988888
Q ss_pred HHHhhcccccccchhhHHHHHHHHhcCCCCCchhhhcchhhhccchHHHHHHHHHHHhhCCCChHHHHHHHHHHHHHHhC
Q 003563 615 VLSRMGKINSKHSKHSKFIRYLRAKYKDCVPPIIISGHQFTMASHHQDAARCYLEAYKLLPENPLINLCVGSALINLALG 694 (810)
Q Consensus 615 ~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~g~~~~~~~~~~~Ai~~y~~a~~~~p~~p~~~l~l~~~~~~~~~~ 694 (810)
++...++ ...+...+.+.++..|+++.+.+..|.++...|++.+|+..|.++.+..|+++.+...+|.++...+
T Consensus 612 ~~~~~g~----~~~A~~~y~~al~~~P~~~~a~~~la~~~~~~g~~~eA~~~l~~ll~~~p~~~~~~~~la~~~~~~g-- 685 (1157)
T PRK11447 612 WAQQRGD----YAAARAAYQRVLTREPGNADARLGLIEVDIAQGDLAAARAQLAKLPATANDSLNTQRRVALAWAALG-- 685 (1157)
T ss_pred HHHHcCC----HHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHhccCCCChHHHHHHHHHHHhCC--
Confidence 8877777 5688999999999999999888999999999999999999999999999999999999999886422
Q ss_pred ccccchhHHHHHHHHHHHHhHhhcCCC------chhhhhHHHHHHHhChhhHHHHHHHHHhc
Q 003563 695 FRLQNKHQCLAQGFAFLYNNLRLCEHS------QEALYNIARACHHVGLVSLAASYYEKVLA 750 (810)
Q Consensus 695 r~~~~r~~~~~q~~~~l~~y~~~~~~~------~e~~ynlgr~~~~lg~~~~Ai~~Y~~vL~ 750 (810)
...+|+..+.+.....+++ ..++..+|+++...|.+..|+.+|++++.
T Consensus 686 --------~~~eA~~~~~~al~~~~~~~~~~~~a~~~~~~a~~~~~~G~~~~A~~~y~~Al~ 739 (1157)
T PRK11447 686 --------DTAAAQRTFNRLIPQAKSQPPSMESALVLRDAARFEAQTGQPQQALETYKDAMV 739 (1157)
T ss_pred --------CHHHHHHHHHHHhhhCccCCcchhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHh
Confidence 2456777777776654433 25777889999999999999999999996
No 9
>PRK09782 bacteriophage N4 receptor, outer membrane subunit; Provisional
Probab=100.00 E-value=4.3e-34 Score=325.56 Aligned_cols=621 Identities=10% Similarity=0.015 Sum_probs=411.3
Q ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCCCHHHHHHHHHHH
Q 003563 32 GVTKMLGEASLQYAYGNFEQAISLLKEVVRLSPNLPETYNTLGLAHSALGNHKSAFDFYVIAAHLSPKDSALWKQLLTFA 111 (810)
Q Consensus 32 ~~~~~l~~a~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~p~~~~~~~~la~~~ 111 (810)
.+..+|..|..+...|++++|+..|+++++.+|+++.+++.++.+|...|++++|+..++++++.+|.+...+..++.+
T Consensus 43 ~~~~~f~~a~~~~~~Gd~~~A~~~l~~Al~~dP~n~~~~~~LA~~yl~~g~~~~A~~~~~kAv~ldP~n~~~~~~La~i- 121 (987)
T PRK09782 43 VIYPRLDKALKAQKNNDEATAIREFEYIHQQVPDNIPLTLYLAEAYRHFGHDDRARLLLEDQLKRHPGDARLERSLAAI- 121 (987)
T ss_pred HHHHHHHHHHHHHhCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCcccHHHHHHHHHh-
Confidence 4566788999999999999999999999999999999999999999999999999999999999999999988888776
Q ss_pred HHcCCHHHHHHHHHHHHHcCCCCHHHHHHHHHH--------HHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcC
Q 003563 112 VQKGDTAQAMYYIRQAIRAEPKDISLRIHLASF--------YVEIGDYEKAAESYEQIQKLFPDNVDATKTGAQLFLKCG 183 (810)
Q Consensus 112 ~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~--------~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g 183 (810)
+++++|+..|+++++.+|++.+++..++.. |.+.++..++++ .+.+...|........++.+|..+|
T Consensus 122 ---~~~~kA~~~ye~l~~~~P~n~~~~~~la~~~~~~~~l~y~q~eqAl~AL~--lr~~~~~~~~~vL~L~~~rlY~~l~ 196 (987)
T PRK09782 122 ---PVEVKSVTTVEELLAQQKACDAVPTLRCRSEVGQNALRLAQLPVARAQLN--DATFAASPEGKTLRTDLLQRAIYLK 196 (987)
T ss_pred ---ccChhHHHHHHHHHHhCCCChhHHHHHHHHhhccchhhhhhHHHHHHHHH--HhhhCCCCCcHHHHHHHHHHHHHHh
Confidence 999999999999999999999999999998 777666666665 3333434445556666699999999
Q ss_pred ChHHHHHHHHHHHhhCCCCCChHHHHHHHHHHHH-cCCHHHHHHHHHHHHHHhcCCCCCcHHHHHHHHHHHHhcCCHHHH
Q 003563 184 QTARSIGILEEYLKVHPSDADLSVIDLLVAILME-NNAYEKTLQHIEHAQIVRFSGKELPLKLKVKAGICYLRLGNMEKA 262 (810)
Q Consensus 184 ~~~~A~~~~~~~l~~~p~~~~~~~~~~la~~~~~-~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A 262 (810)
++++|+..++++.+..|.+.. ....++.+|.. +++ +++..+++. . ......++..++..+...|+.++|
T Consensus 197 dw~~Ai~lL~~L~k~~pl~~~--~~~~L~~ay~q~l~~-~~a~al~~~---~----lk~d~~l~~ala~~yi~~G~~~~A 266 (987)
T PRK09782 197 QWSQADTLYNEARQQNTLSAA--ERRQWFDVLLAGQLD-DRLLALQSQ---G----IFTDPQSRITYATALAYRGEKARL 266 (987)
T ss_pred CHHHHHHHHHHHHhcCCCCHH--HHHHHHHHHHHhhCH-HHHHHHhch---h----cccCHHHHHHHHHHHHHCCCHHHH
Confidence 999999999999999998865 57789998888 477 777777553 1 236778888999999999999999
Q ss_pred HHHHHHhhcc---CCchhHh-----------------------------HHHHHHHHHHHcCCcHHHHHHHHHHHhccCC
Q 003563 263 EILFADLQWK---NAIDHAD-----------------------------LITEVADTLMSLGHSNSALKYYHFLETNAGT 310 (810)
Q Consensus 263 ~~~~~~~~~~---~~~~~~~-----------------------------~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~ 310 (810)
...+++.-.. .|. ... ....++..+.+.++++-+.++ +.. .|
T Consensus 267 ~~~L~~~~~~~~~~~~-~~~~~~~l~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~-~~ 340 (987)
T PRK09782 267 QHYLIENKPLFTTDAQ-EKSWLYLLSKYSANPVQALANYTVQFADNRQYVVGATLPVLLKEGQYDAAQKL----LAT-LP 340 (987)
T ss_pred HHHHHhCcccccCCCc-cHHHHHHHHhccCchhhhccchhhhhHHHHHHHHHHHHHHHHhccHHHHHHHH----hcC-CC
Confidence 9999885332 121 111 223335666677777744433 222 44
Q ss_pred CCHHHHHHHHHHHHHccCHHHHHHHHHHHHhhcCCCHHHHHHHHHHHHHcCCHHHHHHhcCCCCCCCcccCCCCCCChhh
Q 003563 311 DNGYLYLKLAECYLSLKERAHAIMFFYKALDRFEDNIDARLTLASLLLEEAKEEEAITLLSPPKDLDSLDMNSDKSNPWW 390 (810)
Q Consensus 311 ~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~ 390 (810)
.++. ...........+.+.+|........+..|.+.++...++....+.|+.++|..+++++....++..
T Consensus 341 ~~~~-~~~r~~~~~~~~~~~~~~~~~~~~y~~~~~~~~~l~q~~~~~~~~~~~~~a~~~~~~~~~~~~~~~--------- 410 (987)
T PRK09782 341 ANEM-LEERYAVSVATRNKAEALRLARLLYQQEPANLTRLDQLTWQLMQNGQSREAADLLLQRYPFQGDAR--------- 410 (987)
T ss_pred cchH-HHHHHhhccccCchhHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcccHHHHHHHHHHhcCCCcccc---------
Confidence 4543 222222333557888888888888898999999999999999999999999999999998733221
Q ss_pred hHHHHHHHHHHHHHhcCC---chhHHhhhhhhhhhhHHHHHHHHHhhhhhccch--hhHHHHHhHhcCCCCCccccCCCC
Q 003563 391 LNEKIIMKLCHIYRAKGM---PEDFVDAIFPLVCESLCVEALRQKVKVKRRLTK--GILQQRTKIYNNLPTDSILCGIRP 465 (810)
Q Consensus 391 ~~~~~~~~la~~~~~~g~---~~~A~~~~~~~l~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~ 465 (810)
....+...++.+|..++. ..+++....++-..... ..-. ++.. .........+...+..
T Consensus 411 ~~~~l~~~l~~~~~~~~~~~~~~~~~~l~~~~~~~~~~--~~~~------~~~~~~~~~~~~~~al~~~p~~-------- 474 (987)
T PRK09782 411 LSQTLMARLASLLESHPYLATPAKVAILSKPLPLAEQR--QWQS------QLPGIADNCPAIVRLLGDMSPS-------- 474 (987)
T ss_pred cCHHHHHHHHHHHHhCCcccchHHHHHhccccccchhH--HHHh------hhhhhhhhHHHHHHhcccCCCC--------
Confidence 122355599999999987 34443333222221110 0000 0000 0000000111110000
Q ss_pred CCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccccCCCCCCchhhhhccCCCCCCCCCCchhhHHHHHHHHHHHHhh
Q 003563 466 AAPKSELLVAARARKKIQKKEALKEEKKALAKAAGVEWHSDDTDDESQQEAFREPPLPNLLKNEENQCLIIDLCKALASL 545 (810)
Q Consensus 466 ~~~~~~~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 545 (810)
+.... ......+...+. .+ +........ +...|+.+. .+.++..+...
T Consensus 475 ~~~~a-----~~~LG~~l~~~~-~~-eAi~a~~~A------------------------l~~~Pd~~~-~L~lA~al~~~ 522 (987)
T PRK09782 475 YDAAA-----WNRLAKCYRDTL-PG-VALYAWLQA------------------------EQRQPDAWQ-HRAVAYQAYQV 522 (987)
T ss_pred CCHHH-----HHHHHHHHHhCC-cH-HHHHHHHHH------------------------HHhCCchHH-HHHHHHHHHHC
Confidence 00000 000000000000 00 000000000 001223222 44556666677
Q ss_pred hcHHHHHHHHHHHHhhhhccCChhHHHHHHHhhhhhhccccCCchhHHHHHHHHHhCCCChhHhHHHHHHHHhhcccccc
Q 003563 546 QRYEEASEIINLSMRLAYNILPLEKKEELRSLGAKMAYDSTDPNHGFDCAKYILQLHPYSLSAWNCYYKVLSRMGKINSK 625 (810)
Q Consensus 546 ~~~~eA~~~~~~al~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~a~~~~r~~~~~~p~~~~~~~~~~~~~~~~~~~~~~ 625 (810)
|++++|+..+++++..++. ... .+..+.++...|+++.|..+++.++...|.....+..+.......|+
T Consensus 523 Gr~eeAi~~~rka~~~~p~-----~~a--~~~la~all~~Gd~~eA~~~l~qAL~l~P~~~~l~~~La~~l~~~Gr---- 591 (987)
T PRK09782 523 EDYATALAAWQKISLHDMS-----NED--LLAAANTAQAAGNGAARDRWLQQAEQRGLGDNALYWWLHAQRYIPGQ---- 591 (987)
T ss_pred CCHHHHHHHHHHHhccCCC-----cHH--HHHHHHHHHHCCCHHHHHHHHHHHHhcCCccHHHHHHHHHHHHhCCC----
Confidence 7777777777776542211 111 12223344566777777777777777777665444332222222233
Q ss_pred cchhhHHHHHHHHhcCCCCCchhhhcchhhhccchHHHHHHHHHHHhhCCCChHHHHHHHHHHHHHHhCccccchhHHHH
Q 003563 626 HSKHSKFIRYLRAKYKDCVPPIIISGHQFTMASHHQDAARCYLEAYKLLPENPLINLCVGSALINLALGFRLQNKHQCLA 705 (810)
Q Consensus 626 ~~~~~~~~~~~~~~~p~~~~~~~~~g~~~~~~~~~~~Ai~~y~~a~~~~p~~p~~~l~l~~~~~~~~~~r~~~~r~~~~~ 705 (810)
...+...+.+.++..|+ ..++...|.++...|++++|+..|.+++.++|++|.+...+|.++...+ ...
T Consensus 592 ~~eAl~~~~~AL~l~P~-~~a~~~LA~~l~~lG~~deA~~~l~~AL~l~Pd~~~a~~nLG~aL~~~G----------~~e 660 (987)
T PRK09782 592 PELALNDLTRSLNIAPS-ANAYVARATIYRQRHNVPAAVSDLRAALELEPNNSNYQAALGYALWDSG----------DIA 660 (987)
T ss_pred HHHHHHHHHHHHHhCCC-HHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCC----------CHH
Confidence 34667777777777775 5555666777777777777777777777777777777777777766432 245
Q ss_pred HHHHHHHHhHhhcCCCchhhhhHHHHHHHhChhhHHHHHHHHHhccccc
Q 003563 706 QGFAFLYNNLRLCEHSQEALYNIARACHHVGLVSLAASYYEKVLAIKEK 754 (810)
Q Consensus 706 q~~~~l~~y~~~~~~~~e~~ynlgr~~~~lg~~~~Ai~~Y~~vL~~~~~ 754 (810)
+|+..+.+..++.|++.++++|+|.++..+|.+..|+.+|++++++.|+
T Consensus 661 eAi~~l~~AL~l~P~~~~a~~nLA~al~~lGd~~eA~~~l~~Al~l~P~ 709 (987)
T PRK09782 661 QSREMLERAHKGLPDDPALIRQLAYVNQRLDDMAATQHYARLVIDDIDN 709 (987)
T ss_pred HHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCC
Confidence 6777777777777777777777777777777777777777777777654
No 10
>KOG2002 consensus TPR-containing nuclear phosphoprotein that regulates K(+) uptake [Inorganic ion transport and metabolism]
Probab=100.00 E-value=8.7e-34 Score=299.69 Aligned_cols=612 Identities=13% Similarity=0.089 Sum_probs=411.9
Q ss_pred HHHHHHHHHHHcCCH--HHHHHHHHHHHHhCCCChHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCCC-HHHHHHHHHHH
Q 003563 35 KMLGEASLQYAYGNF--EQAISLLKEVVRLSPNLPETYNTLGLAHSALGNHKSAFDFYVIAAHLSPKD-SALWKQLLTFA 111 (810)
Q Consensus 35 ~~l~~a~~~~~~g~~--~~A~~~~~~~l~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~p~~-~~~~~~la~~~ 111 (810)
.++.++..+...|+. +.|...|.-+++..|++..++...|.+.+..|+|..|+.+|++++.++|.. ++....+|.|+
T Consensus 130 ~l~~~~~~~l~~~~~~~~~A~a~F~~Vl~~sp~Nil~LlGkA~i~ynkkdY~~al~yyk~al~inp~~~aD~rIgig~Cf 209 (1018)
T KOG2002|consen 130 HLLVQRGFLLLEGDKSMDDADAQFHFVLKQSPDNILALLGKARIAYNKKDYRGALKYYKKALRINPACKADVRIGIGHCF 209 (1018)
T ss_pred hhhhhhhhhhhcCCccHHHHHHHHHHHHhhCCcchHHHHHHHHHHhccccHHHHHHHHHHHHhcCcccCCCccchhhhHH
Confidence 344555556666655 788888888888888888888888888888888888888888888877754 45566777888
Q ss_pred HHcCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHcCC---HHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCChHHH
Q 003563 112 VQKGDTAQAMYYIRQAIRAEPKDISLRIHLASFYVEIGD---YEKAAESYEQIQKLFPDNVDATKTGAQLFLKCGQTARS 188 (810)
Q Consensus 112 ~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~---~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A 188 (810)
.++|+.+.|+..|.++++++|.++.++..||.+-....+ +..++..+.++...+|.+|.++..|+..++..|++..+
T Consensus 210 ~kl~~~~~a~~a~~ralqLdp~~v~alv~L~~~~l~~~d~~s~~~~~~ll~~ay~~n~~nP~~l~~LAn~fyfK~dy~~v 289 (1018)
T KOG2002|consen 210 WKLGMSEKALLAFERALQLDPTCVSALVALGEVDLNFNDSDSYKKGVQLLQRAYKENNENPVALNHLANHFYFKKDYERV 289 (1018)
T ss_pred HhccchhhHHHHHHHHHhcChhhHHHHHHHHHHHHHccchHHHHHHHHHHHHHHhhcCCCcHHHHHHHHHHhhcccHHHH
Confidence 888888888888888888888888877777777655443 56777788888888888888888888888888888888
Q ss_pred HHHHHHHHhhCCCC-CChHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhcCCCCCc-HHHHHHHHHHHHhcCCHHHHHHHH
Q 003563 189 IGILEEYLKVHPSD-ADLSVIDLLVAILMENNAYEKTLQHIEHAQIVRFSGKELP-LKLKVKAGICYLRLGNMEKAEILF 266 (810)
Q Consensus 189 ~~~~~~~l~~~p~~-~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~-~~~~~~la~~~~~~g~~~~A~~~~ 266 (810)
..+...++...... ..+..++.+|..|..+|++++|..+|.++... .+.. .-.++.+|..++..|+++.|..+|
T Consensus 290 ~~la~~ai~~t~~~~~~aes~Y~~gRs~Ha~Gd~ekA~~yY~~s~k~----~~d~~~l~~~GlgQm~i~~~dle~s~~~f 365 (1018)
T KOG2002|consen 290 WHLAEHAIKNTENKSIKAESFYQLGRSYHAQGDFEKAFKYYMESLKA----DNDNFVLPLVGLGQMYIKRGDLEESKFCF 365 (1018)
T ss_pred HHHHHHHHHhhhhhHHHHHHHHHHHHHHHhhccHHHHHHHHHHHHcc----CCCCccccccchhHHHHHhchHHHHHHHH
Confidence 88887777654222 22345778888888888888888888887776 2333 555677888888888888888888
Q ss_pred HHhhccCCchhHhHHHHHHHHHHHcC----CcHHHHHHHHHHHhccCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHhh
Q 003563 267 ADLQWKNAIDHADLITEVADTLMSLG----HSNSALKYYHFLETNAGTDNGYLYLKLAECYLSLKERAHAIMFFYKALDR 342 (810)
Q Consensus 267 ~~~~~~~~~~~~~~~~~la~~~~~~~----~~~~A~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~ 342 (810)
++++...|. ..+....+|.+|...+ ..+.|..++.+++.. .|.+..+|..+|.++.... ...++.+|.+|+..
T Consensus 366 Ekv~k~~p~-~~etm~iLG~Lya~~~~~~~~~d~a~~~l~K~~~~-~~~d~~a~l~laql~e~~d-~~~sL~~~~~A~d~ 442 (1018)
T KOG2002|consen 366 EKVLKQLPN-NYETMKILGCLYAHSAKKQEKRDKASNVLGKVLEQ-TPVDSEAWLELAQLLEQTD-PWASLDAYGNALDI 442 (1018)
T ss_pred HHHHHhCcc-hHHHHHHHHhHHHhhhhhhHHHHHHHHHHHHHHhc-ccccHHHHHHHHHHHHhcC-hHHHHHHHHHHHHH
Confidence 888777774 7777778888877765 556777777777765 6778888888888776544 44447777777743
Q ss_pred -----cCCCHHHHHHHHHHHHHcCCHHHHHHhcCCCCCC-----CcccCCCCCCChhhhHHHHHHHHHHHHHhcCCchhH
Q 003563 343 -----FEDNIDARLTLASLLLEEAKEEEAITLLSPPKDL-----DSLDMNSDKSNPWWLNEKIIMKLCHIYRAKGMPEDF 412 (810)
Q Consensus 343 -----~p~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~-----~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A 412 (810)
.+--++...++|..++..|++.+|...+.+++.. +++... . ......|++|.++...++++.|
T Consensus 443 L~~~~~~ip~E~LNNvaslhf~~g~~~~A~~~f~~A~~~~~~~~n~de~~-~------~~lt~~YNlarl~E~l~~~~~A 515 (1018)
T KOG2002|consen 443 LESKGKQIPPEVLNNVASLHFRLGNIEKALEHFKSALGKLLEVANKDEGK-S------TNLTLKYNLARLLEELHDTEVA 515 (1018)
T ss_pred HHHcCCCCCHHHHHhHHHHHHHhcChHHHHHHHHHHhhhhhhhcCccccc-c------chhHHHHHHHHHHHhhhhhhHH
Confidence 2233677788888888888888888887776654 222210 0 1234678888888888888888
Q ss_pred HhhhhhhhhhhHHHHHHHHHhh-hh--hccchhhHHHHHhHhcCCCCCccccCCCCCCCchHHHHHHHHHHHHHHHHHHH
Q 003563 413 VDAIFPLVCESLCVEALRQKVK-VK--RRLTKGILQQRTKIYNNLPTDSILCGIRPAAPKSELLVAARARKKIQKKEALK 489 (810)
Q Consensus 413 ~~~~~~~l~~~~~~~~~~~~~~-~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~ 489 (810)
.+.|..+++.++.=-+.+.+.. .. +....+.....+..+....
T Consensus 516 ~e~Yk~Ilkehp~YId~ylRl~~ma~~k~~~~ea~~~lk~~l~~d~---------------------------------- 561 (1018)
T KOG2002|consen 516 EEMYKSILKEHPGYIDAYLRLGCMARDKNNLYEASLLLKDALNIDS---------------------------------- 561 (1018)
T ss_pred HHHHHHHHHHCchhHHHHHHhhHHHHhccCcHHHHHHHHHHHhccc----------------------------------
Confidence 8888888877654222222110 00 0000000000000000000
Q ss_pred HHHHHHHHhcccccCCCCCCchhhhhccCCCCCCCCCCchhhHHHHHHHHHHHHhhhcHHHHHHHHHHHHhhhhccCChh
Q 003563 490 EEKKALAKAAGVEWHSDDTDDESQQEAFREPPLPNLLKNEENQCLIIDLCKALASLQRYEEASEIINLSMRLAYNILPLE 569 (810)
Q Consensus 490 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~eA~~~~~~al~~~~~~~~~~ 569 (810)
.+|+ +.--+|..+.+.....-|..-+...+.-... . ++
T Consensus 562 -------------------------------------~np~---arsl~G~~~l~k~~~~~a~k~f~~i~~~~~~-~-~D 599 (1018)
T KOG2002|consen 562 -------------------------------------SNPN---ARSLLGNLHLKKSEWKPAKKKFETILKKTST-K-TD 599 (1018)
T ss_pred -------------------------------------CCcH---HHHHHHHHHHhhhhhcccccHHHHHHhhhcc-C-Cc
Confidence 0111 1111222222222222222222222110000 0 00
Q ss_pred HHHHHHHhhhhhhc------------cccCCchhHHHHHHHHHhCCCChhHhHHHHHHHHhhcccccccchhhHHHHHHH
Q 003563 570 KKEELRSLGAKMAY------------DSTDPNHGFDCAKYILQLHPYSLSAWNCYYKVLSRMGKINSKHSKHSKFIRYLR 637 (810)
Q Consensus 570 ~~~~l~~~~~~~~~------------~~~~~~~a~~~~r~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 637 (810)
...+..++- +++ ..+-.++|+.++.++++.+|.|..+-|..+.|+...+. .+.+...|.++.
T Consensus 600 -~YsliaLGN-~~~~~l~~~~rn~ek~kk~~~KAlq~y~kvL~~dpkN~yAANGIgiVLA~kg~----~~~A~dIFsqVr 673 (1018)
T KOG2002|consen 600 -AYSLIALGN-VYIQALHNPSRNPEKEKKHQEKALQLYGKVLRNDPKNMYAANGIGIVLAEKGR----FSEARDIFSQVR 673 (1018)
T ss_pred -hhHHHHhhH-HHHHHhcccccChHHHHHHHHHHHHHHHHHHhcCcchhhhccchhhhhhhccC----chHHHHHHHHHH
Confidence 000000100 111 11334689999999999999999999999999988887 568888888888
Q ss_pred HhcCCCCCchhhhcchhhhccchHHHHHHHHHHHhh-CCCC-hHHHHHHHHHHHHHHhCccccchhHHHHHHHHHHHHhH
Q 003563 638 AKYKDCVPPIIISGHQFTMASHHQDAARCYLEAYKL-LPEN-PLINLCVGSALINLALGFRLQNKHQCLAQGFAFLYNNL 715 (810)
Q Consensus 638 ~~~p~~~~~~~~~g~~~~~~~~~~~Ai~~y~~a~~~-~p~~-p~~~l~l~~~~~~~~~~r~~~~r~~~~~q~~~~l~~y~ 715 (810)
+.-.++.+.++..||++...|+|-.||..|+++++. +|++ +-+..+||-++...+. ...+...+...+
T Consensus 674 Ea~~~~~dv~lNlah~~~e~~qy~~AIqmYe~~lkkf~~~~~~~vl~~Lara~y~~~~----------~~eak~~ll~a~ 743 (1018)
T KOG2002|consen 674 EATSDFEDVWLNLAHCYVEQGQYRLAIQMYENCLKKFYKKNRSEVLHYLARAWYEAGK----------LQEAKEALLKAR 743 (1018)
T ss_pred HHHhhCCceeeeHHHHHHHHHHHHHHHHHHHHHHHHhcccCCHHHHHHHHHHHHHhhh----------HHHHHHHHHHHH
Confidence 877778889999999999999999999999999954 4444 8899999999986653 557777888888
Q ss_pred hhcCCCchhhhhHHHHHHHhC-------------------hhhHHHHHHHHHhccc
Q 003563 716 RLCEHSQEALYNIARACHHVG-------------------LVSLAASYYEKVLAIK 752 (810)
Q Consensus 716 ~~~~~~~e~~ynlgr~~~~lg-------------------~~~~Ai~~Y~~vL~~~ 752 (810)
.+.|++..+.||+|-+..+++ ....|++++...-...
T Consensus 744 ~~~p~~~~v~FN~a~v~kkla~s~lr~~k~t~eev~~a~~~le~a~r~F~~ls~~~ 799 (1018)
T KOG2002|consen 744 HLAPSNTSVKFNLALVLKKLAESILRLEKRTLEEVLEAVKELEEARRLFTELSKNG 799 (1018)
T ss_pred HhCCccchHHhHHHHHHHHHHHHHHhcccccHHHHHHHHHHHHHHHHHHHHHHhcC
Confidence 889999999999999888764 4556666666665554
No 11
>PRK09782 bacteriophage N4 receptor, outer membrane subunit; Provisional
Probab=100.00 E-value=1.5e-30 Score=296.64 Aligned_cols=600 Identities=11% Similarity=0.006 Sum_probs=443.1
Q ss_pred CHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCCCHHHHHHHHH
Q 003563 30 SPGVTKMLGEASLQYAYGNFEQAISLLKEVVRLSPNLPETYNTLGLAHSALGNHKSAFDFYVIAAHLSPKDSALWKQLLT 109 (810)
Q Consensus 30 ~~~~~~~l~~a~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~p~~~~~~~~la~ 109 (810)
|......+..|..++..|++++|+..++++++.+|++...+..++.+ +++++|+..+++++..+|++.+++..++.
T Consensus 75 P~n~~~~~~LA~~yl~~g~~~~A~~~~~kAv~ldP~n~~~~~~La~i----~~~~kA~~~ye~l~~~~P~n~~~~~~la~ 150 (987)
T PRK09782 75 PDNIPLTLYLAEAYRHFGHDDRARLLLEDQLKRHPGDARLERSLAAI----PVEVKSVTTVEELLAQQKACDAVPTLRCR 150 (987)
T ss_pred CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCcccHHHHHHHHHh----ccChhHHHHHHHHHHhCCCChhHHHHHHH
Confidence 33455668889999999999999999999999999999988888777 99999999999999999999999999999
Q ss_pred H--------HHHcCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHH
Q 003563 110 F--------AVQKGDTAQAMYYIRQAIRAEPKDISLRIHLASFYVEIGDYEKAAESYEQIQKLFPDNVDATKTGAQLFLK 181 (810)
Q Consensus 110 ~--------~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~ 181 (810)
. |.+.++..+++. .+.+..+|........++.+|..+|++++|+..+.++++..|.+......++.+|..
T Consensus 151 ~~~~~~~l~y~q~eqAl~AL~--lr~~~~~~~~~vL~L~~~rlY~~l~dw~~Ai~lL~~L~k~~pl~~~~~~~L~~ay~q 228 (987)
T PRK09782 151 SEVGQNALRLAQLPVARAQLN--DATFAASPEGKTLRTDLLQRAIYLKQWSQADTLYNEARQQNTLSAAERRQWFDVLLA 228 (987)
T ss_pred HhhccchhhhhhHHHHHHHHH--HhhhCCCCCcHHHHHHHHHHHHHHhCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHH
Confidence 8 666655555554 333333344555666679999999999999999999999999999999999999998
Q ss_pred -cCChHHHHHHHHHHHhhCCCCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhcCCCCCcH-----------------
Q 003563 182 -CGQTARSIGILEEYLKVHPSDADLSVIDLLVAILMENNAYEKTLQHIEHAQIVRFSGKELPL----------------- 243 (810)
Q Consensus 182 -~g~~~~A~~~~~~~l~~~p~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~----------------- 243 (810)
+++ +++..+++..++ .++ .++..++..+...|+.++|...+++.-...+. .+.+.
T Consensus 229 ~l~~-~~a~al~~~~lk---~d~--~l~~ala~~yi~~G~~~~A~~~L~~~~~~~~~-~~~~~~~~~~l~r~~~~~~~~~ 301 (987)
T PRK09782 229 GQLD-DRLLALQSQGIF---TDP--QSRITYATALAYRGEKARLQHYLIENKPLFTT-DAQEKSWLYLLSKYSANPVQAL 301 (987)
T ss_pred hhCH-HHHHHHhchhcc---cCH--HHHHHHHHHHHHCCCHHHHHHHHHhCcccccC-CCccHHHHHHHHhccCchhhhc
Confidence 577 888888664333 233 37889999999999999999999885443221 11111
Q ss_pred ------------HHHHHHHHHHHhcCCHHHHHHHHHHhhccCCchhHhHHHHHHHHHHHcCCcHHHHHHHHHHHhccCCC
Q 003563 244 ------------KLKVKAGICYLRLGNMEKAEILFADLQWKNAIDHADLITEVADTLMSLGHSNSALKYYHFLETNAGTD 311 (810)
Q Consensus 244 ------------~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~ 311 (810)
.....++..+...++++-++.+ . ...|. .. ............+.+.+|.......... .|.
T Consensus 302 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~---~~~~~-~~-~~~~r~~~~~~~~~~~~~~~~~~~~y~~-~~~ 374 (987)
T PRK09782 302 ANYTVQFADNRQYVVGATLPVLLKEGQYDAAQKL-L---ATLPA-NE-MLEERYAVSVATRNKAEALRLARLLYQQ-EPA 374 (987)
T ss_pred cchhhhhHHHHHHHHHHHHHHHHhccHHHHHHHH-h---cCCCc-ch-HHHHHHhhccccCchhHHHHHHHHHHhc-CCC
Confidence 1222335556666777754433 2 22232 22 2222222334557888888888887754 699
Q ss_pred CHHHHHHHHHHHHHccCHHHHHHHHHHHHhhcCCC---HHHHHHHHHHHHHcCC---HHHHHHhc---------------
Q 003563 312 NGYLYLKLAECYLSLKERAHAIMFFYKALDRFEDN---IDARLTLASLLLEEAK---EEEAITLL--------------- 370 (810)
Q Consensus 312 ~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~---~~~~~~la~~~~~~g~---~~~A~~~~--------------- 370 (810)
+...+..++......|+.++|...|+.+....++- ......++.+|...+. ..++..+.
T Consensus 375 ~~~~l~q~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~ 454 (987)
T PRK09782 375 NLTRLDQLTWQLMQNGQSREAADLLLQRYPFQGDARLSQTLMARLASLLESHPYLATPAKVAILSKPLPLAEQRQWQSQL 454 (987)
T ss_pred CHHHHHHHHHHHHHcccHHHHHHHHHHhcCCCcccccCHHHHHHHHHHHHhCCcccchHHHHHhccccccchhHHHHhhh
Confidence 99999999999999999999999999999863322 3344588888888776 44443332
Q ss_pred ----------CCCCCCCcccCCCCCCChhhhHHHHHHHHHHHHHhcCCchhHHhhhhhhhhhhHHHHHHHHHhhhhhccc
Q 003563 371 ----------SPPKDLDSLDMNSDKSNPWWLNEKIIMKLCHIYRAKGMPEDFVDAIFPLVCESLCVEALRQKVKVKRRLT 440 (810)
Q Consensus 371 ----------~~a~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~~~~~~~~~ 440 (810)
.+++...|.+ ....+++.+|.++.. |++++|+..+.+.+...++. ..... ..
T Consensus 455 ~~~~~~~~~~~~al~~~p~~----------~~~~a~~~LG~~l~~-~~~~eAi~a~~~Al~~~Pd~--~~~L~-lA---- 516 (987)
T PRK09782 455 PGIADNCPAIVRLLGDMSPS----------YDAAAWNRLAKCYRD-TLPGVALYAWLQAEQRQPDA--WQHRA-VA---- 516 (987)
T ss_pred hhhhhhHHHHHHhcccCCCC----------CCHHHHHHHHHHHHh-CCcHHHHHHHHHHHHhCCch--HHHHH-HH----
Confidence 1222222320 024688999999987 89999999898888664331 00000 00
Q ss_pred hhhHHHHHhHhcCCCCCccccCCCCCCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccccCCCCCCchhhhhccCCC
Q 003563 441 KGILQQRTKIYNNLPTDSILCGIRPAAPKSELLVAARARKKIQKKEALKEEKKALAKAAGVEWHSDDTDDESQQEAFREP 520 (810)
Q Consensus 441 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 520 (810)
....... ....+... +. +
T Consensus 517 -------~al~~~G----------------r~eeAi~~-------------------------~r--------k------ 534 (987)
T PRK09782 517 -------YQAYQVE----------------DYATALAA-------------------------WQ--------K------ 534 (987)
T ss_pred -------HHHHHCC----------------CHHHHHHH-------------------------HH--------H------
Confidence 0000000 00000000 00 0
Q ss_pred CCCCCCCchhhHHHHHHHHHHHHhhhcHHHHHHHHHHHHhhhhccCChhHHHHHHHhhhhhhccccCCchhHHHHHHHHH
Q 003563 521 PLPNLLKNEENQCLIIDLCKALASLQRYEEASEIINLSMRLAYNILPLEKKEELRSLGAKMAYDSTDPNHGFDCAKYILQ 600 (810)
Q Consensus 521 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~eA~~~~~~al~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~a~~~~r~~~~ 600 (810)
+...+......+.++.++...|++++|...++.++...+. ...+....+......|++++|...+++++.
T Consensus 535 ----a~~~~p~~~a~~~la~all~~Gd~~eA~~~l~qAL~l~P~------~~~l~~~La~~l~~~Gr~~eAl~~~~~AL~ 604 (987)
T PRK09782 535 ----ISLHDMSNEDLLAAANTAQAAGNGAARDRWLQQAEQRGLG------DNALYWWLHAQRYIPGQPELALNDLTRSLN 604 (987)
T ss_pred ----HhccCCCcHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCc------cHHHHHHHHHHHHhCCCHHHHHHHHHHHHH
Confidence 0001111233567899999999999999999999975422 122222222222345999999999999999
Q ss_pred hCCCChhHhHHHHHHHHhhcccccccchhhHHHHHHHHhcCCCCCchhhhcchhhhccchHHHHHHHHHHHhhCCCChHH
Q 003563 601 LHPYSLSAWNCYYKVLSRMGKINSKHSKHSKFIRYLRAKYKDCVPPIIISGHQFTMASHHQDAARCYLEAYKLLPENPLI 680 (810)
Q Consensus 601 ~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~g~~~~~~~~~~~Ai~~y~~a~~~~p~~p~~ 680 (810)
.+|+ ..+|..+..++.+.++ ...+...+.+.+...|++..++..+|.++...|+++.|+..|.+|++++|++|.+
T Consensus 605 l~P~-~~a~~~LA~~l~~lG~----~deA~~~l~~AL~l~Pd~~~a~~nLG~aL~~~G~~eeAi~~l~~AL~l~P~~~~a 679 (987)
T PRK09782 605 IAPS-ANAYVARATIYRQRHN----VPAAVSDLRAALELEPNNSNYQAALGYALWDSGDIAQSREMLERAHKGLPDDPAL 679 (987)
T ss_pred hCCC-HHHHHHHHHHHHHCCC----HHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHH
Confidence 9996 8899888888888877 5678999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHhCccccchhHHHHHHHHHHHHhHhhcCCCchhhhhHHHHHHHhChhhHHHHHHHHHhccccc
Q 003563 681 NLCVGSALINLALGFRLQNKHQCLAQGFAFLYNNLRLCEHSQEALYNIARACHHVGLVSLAASYYEKVLAIKEK 754 (810)
Q Consensus 681 ~l~l~~~~~~~~~~r~~~~r~~~~~q~~~~l~~y~~~~~~~~e~~ynlgr~~~~lg~~~~Ai~~Y~~vL~~~~~ 754 (810)
.+.+|+++...+ ....|+.++.+..++.|++..+.+-.|.+......+..|.+.|.+...+.|+
T Consensus 680 ~~nLA~al~~lG----------d~~eA~~~l~~Al~l~P~~a~i~~~~g~~~~~~~~~~~a~~~~~r~~~~~~~ 743 (987)
T PRK09782 680 IRQLAYVNQRLD----------DMAATQHYARLVIDDIDNQALITPLTPEQNQQRFNFRRLHEEVGRRWTFSFD 743 (987)
T ss_pred HHHHHHHHHHCC----------CHHHHHHHHHHHHhcCCCCchhhhhhhHHHHHHHHHHHHHHHHHHHhhcCcc
Confidence 999999997544 2567999999999999999999999999999999999999999999999764
No 12
>TIGR00990 3a0801s09 mitochondrial precursor proteins import receptor (72 kDa mitochondrial outermembrane protein) (mitochondrial import receptor for the ADP/ATP carrier) (translocase of outermembrane tom70).
Probab=100.00 E-value=3.8e-32 Score=306.40 Aligned_cols=369 Identities=14% Similarity=0.110 Sum_probs=321.8
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCCCHHHHHHHHHHHHH
Q 003563 34 TKMLGEASLQYAYGNFEQAISLLKEVVRLSPNLPETYNTLGLAHSALGNHKSAFDFYVIAAHLSPKDSALWKQLLTFAVQ 113 (810)
Q Consensus 34 ~~~l~~a~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~p~~~~~~~~la~~~~~ 113 (810)
..+..+|+.++..|+|++|+..|++++...|+ +..+..+|.||..+|++++|+..+.++++++|++..+|..+|.++..
T Consensus 128 ~~~k~~G~~~~~~~~~~~Ai~~y~~al~~~p~-~~~~~n~a~~~~~l~~~~~Ai~~~~~al~l~p~~~~a~~~~a~a~~~ 206 (615)
T TIGR00990 128 AKLKEKGNKAYRNKDFNKAIKLYSKAIECKPD-PVYYSNRAACHNALGDWEKVVEDTTAALELDPDYSKALNRRANAYDG 206 (615)
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCc-hHHHHHHHHHHHHhCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHH
Confidence 34668899999999999999999999999996 78999999999999999999999999999999999999999999999
Q ss_pred cCCHHHHHHHHHHHHHcCCC------------------------------CHHHHHHHHHH-------------------
Q 003563 114 KGDTAQAMYYIRQAIRAEPK------------------------------DISLRIHLASF------------------- 144 (810)
Q Consensus 114 ~g~~~~A~~~~~~al~~~p~------------------------------~~~~~~~la~~------------------- 144 (810)
+|++++|+..|..+...++. +...+..++..
T Consensus 207 lg~~~eA~~~~~~~~~~~~~~~~~~~~~~~~~l~~~a~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 286 (615)
T TIGR00990 207 LGKYADALLDLTASCIIDGFRNEQSAQAVERLLKKFAESKAKEILETKPENLPSVTFVGNYLQSFRPKPRPAGLEDSNEL 286 (615)
T ss_pred cCCHHHHHHHHHHHHHhCCCccHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCCCHHHHHHHHHHccCCcchhhhhccccc
Confidence 99999999877665543322 11111111111
Q ss_pred --------------H---HHcCCHHHHHHHHHHHHHhC---CCCHHHHHHHHHHHHHcCChHHHHHHHHHHHhhCCCCCC
Q 003563 145 --------------Y---VEIGDYEKAAESYEQIQKLF---PDNVDATKTGAQLFLKCGQTARSIGILEEYLKVHPSDAD 204 (810)
Q Consensus 145 --------------~---~~~g~~~~A~~~~~~~l~~~---p~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~ 204 (810)
+ ...+++++|++.|++++... |....++..+|.++...|++++|+..++++++.+|....
T Consensus 287 ~~~~~~~~~~l~~~~~e~~~~~~y~~A~~~~~~al~~~~~~~~~a~a~~~lg~~~~~~g~~~eA~~~~~kal~l~P~~~~ 366 (615)
T TIGR00990 287 DEETGNGQLQLGLKSPESKADESYEEAARAFEKALDLGKLGEKEAIALNLRGTFKCLKGKHLEALADLSKSIELDPRVTQ 366 (615)
T ss_pred ccccccchHHHHHHHHHhhhhhhHHHHHHHHHHHHhcCCCChhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCcHH
Confidence 1 12367999999999999864 677789999999999999999999999999999998765
Q ss_pred hHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhcCCCCCcHHHHHHHHHHHHhcCCHHHHHHHHHHhhccCCchhHhHHHHH
Q 003563 205 LSVIDLLVAILMENNAYEKTLQHIEHAQIVRFSGKELPLKLKVKAGICYLRLGNMEKAEILFADLQWKNAIDHADLITEV 284 (810)
Q Consensus 205 ~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l 284 (810)
.+..+|.++...|++++|+..+++++.. .+....+++.+|.++...|++++|+..|++++..+|. +...+..+
T Consensus 367 --~~~~la~~~~~~g~~~eA~~~~~~al~~----~p~~~~~~~~lg~~~~~~g~~~~A~~~~~kal~l~P~-~~~~~~~l 439 (615)
T TIGR00990 367 --SYIKRASMNLELGDPDKAEEDFDKALKL----NSEDPDIYYHRAQLHFIKGEFAQAGKDYQKSIDLDPD-FIFSHIQL 439 (615)
T ss_pred --HHHHHHHHHHHCCCHHHHHHHHHHHHHh----CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCcc-CHHHHHHH
Confidence 7889999999999999999999999998 6778899999999999999999999999999999885 78889999
Q ss_pred HHHHHHcCCcHHHHHHHHHHHhccCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHhhcCCCHHHH------HHHHH-HH
Q 003563 285 ADTLMSLGHSNSALKYYHFLETNAGTDNGYLYLKLAECYLSLKERAHAIMFFYKALDRFEDNIDAR------LTLAS-LL 357 (810)
Q Consensus 285 a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~------~~la~-~~ 357 (810)
|.++...|++++|+..|++++.. .|.++.++..+|.++...|++++|+..|++++++.|++...+ ...+. ++
T Consensus 440 a~~~~~~g~~~eA~~~~~~al~~-~P~~~~~~~~lg~~~~~~g~~~~A~~~~~~Al~l~p~~~~~~~~~~~l~~~a~~~~ 518 (615)
T TIGR00990 440 GVTQYKEGSIASSMATFRRCKKN-FPEAPDVYNYYGELLLDQNKFDEAIEKFDTAIELEKETKPMYMNVLPLINKALALF 518 (615)
T ss_pred HHHHHHCCCHHHHHHHHHHHHHh-CCCChHHHHHHHHHHHHccCHHHHHHHHHHHHhcCCccccccccHHHHHHHHHHHH
Confidence 99999999999999999999987 899999999999999999999999999999999998754332 22333 33
Q ss_pred HHcCCHHHHHHhcCCCCCCCcccCCCCCCChhhhHHHHHHHHHHHHHhcCCchhHHhhhhhhhhhh
Q 003563 358 LEEAKEEEAITLLSPPKDLDSLDMNSDKSNPWWLNEKIIMKLCHIYRAKGMPEDFVDAIFPLVCES 423 (810)
Q Consensus 358 ~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~ 423 (810)
...|++++|+.++++++..+|.+. .++..+|.++...|++++|++.|+++++..
T Consensus 519 ~~~~~~~eA~~~~~kAl~l~p~~~------------~a~~~la~~~~~~g~~~eAi~~~e~A~~l~ 572 (615)
T TIGR00990 519 QWKQDFIEAENLCEKALIIDPECD------------IAVATMAQLLLQQGDVDEALKLFERAAELA 572 (615)
T ss_pred HHhhhHHHHHHHHHHHHhcCCCcH------------HHHHHHHHHHHHccCHHHHHHHHHHHHHHh
Confidence 447999999999999999998753 478899999999999999999999987653
No 13
>TIGR00990 3a0801s09 mitochondrial precursor proteins import receptor (72 kDa mitochondrial outermembrane protein) (mitochondrial import receptor for the ADP/ATP carrier) (translocase of outermembrane tom70).
Probab=100.00 E-value=7.1e-31 Score=296.12 Aligned_cols=445 Identities=14% Similarity=0.036 Sum_probs=338.0
Q ss_pred hHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHH
Q 003563 67 PETYNTLGLAHSALGNHKSAFDFYVIAAHLSPKDSALWKQLLTFAVQKGDTAQAMYYIRQAIRAEPKDISLRIHLASFYV 146 (810)
Q Consensus 67 ~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~ 146 (810)
+..+..+|..++..|++++|+..|.+++...|+ +..+.++|.++..+|++++|+..+.++++.+|++..++..+|.+|.
T Consensus 127 a~~~k~~G~~~~~~~~~~~Ai~~y~~al~~~p~-~~~~~n~a~~~~~l~~~~~Ai~~~~~al~l~p~~~~a~~~~a~a~~ 205 (615)
T TIGR00990 127 AAKLKEKGNKAYRNKDFNKAIKLYSKAIECKPD-PVYYSNRAACHNALGDWEKVVEDTTAALELDPDYSKALNRRANAYD 205 (615)
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCc-hHHHHHHHHHHHHhCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHH
Confidence 345788999999999999999999999999996 7789999999999999999999999999999999999999999999
Q ss_pred HcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHhhCCCCCChHHHHHHHHHHHHcCCHHHHHH
Q 003563 147 EIGDYEKAAESYEQIQKLFPDNVDATKTGAQLFLKCGQTARSIGILEEYLKVHPSDADLSVIDLLVAILMENNAYEKTLQ 226 (810)
Q Consensus 147 ~~g~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~~~la~~~~~~g~~~~A~~ 226 (810)
.+|++++|+..|..+....+.+......+...... ..+.......++..|.+.. .+..++..+. ......+..
T Consensus 206 ~lg~~~eA~~~~~~~~~~~~~~~~~~~~~~~~~l~----~~a~~~~~~~l~~~~~~~~--~~~~~~~~~~-~~~~~~~~~ 278 (615)
T TIGR00990 206 GLGKYADALLDLTASCIIDGFRNEQSAQAVERLLK----KFAESKAKEILETKPENLP--SVTFVGNYLQ-SFRPKPRPA 278 (615)
T ss_pred HcCCHHHHHHHHHHHHHhCCCccHHHHHHHHHHHH----HHHHHHHHHHHhcCCCCCC--CHHHHHHHHH-HccCCcchh
Confidence 99999999999988887766554332222221111 3455666677777777655 3445555442 222222222
Q ss_pred HHHHHHHHhcCCCCCcHHHHHHHHHHH---HhcCCHHHHHHHHHHhhccC--CchhHhHHHHHHHHHHHcCCcHHHHHHH
Q 003563 227 HIEHAQIVRFSGKELPLKLKVKAGICY---LRLGNMEKAEILFADLQWKN--AIDHADLITEVADTLMSLGHSNSALKYY 301 (810)
Q Consensus 227 ~~~~~~~~~~~~~~~~~~~~~~la~~~---~~~g~~~~A~~~~~~~~~~~--~~~~~~~~~~la~~~~~~~~~~~A~~~~ 301 (810)
.+....+. .+.....+..++... ...+++++|+..|++++... .+....++..+|.++...|++++|+..|
T Consensus 279 ~~~~~~~~----~~~~~~~~~~l~~~~~e~~~~~~y~~A~~~~~~al~~~~~~~~~a~a~~~lg~~~~~~g~~~eA~~~~ 354 (615)
T TIGR00990 279 GLEDSNEL----DEETGNGQLQLGLKSPESKADESYEEAARAFEKALDLGKLGEKEAIALNLRGTFKCLKGKHLEALADL 354 (615)
T ss_pred hhhccccc----ccccccchHHHHHHHHHhhhhhhHHHHHHHHHHHHhcCCCChhhHHHHHHHHHHHHHcCCHHHHHHHH
Confidence 23333222 222233334444433 23478999999999998653 2347788999999999999999999999
Q ss_pred HHHHhccCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHhhcCCCHHHHHHHHHHHHHcCCHHHHHHhcCCCCCCCcccC
Q 003563 302 HFLETNAGTDNGYLYLKLAECYLSLKERAHAIMFFYKALDRFEDNIDARLTLASLLLEEAKEEEAITLLSPPKDLDSLDM 381 (810)
Q Consensus 302 ~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~ 381 (810)
++++.. .|..+..|..+|.++...|++++|+..|+++++.+|++++++..+|.++...|++++|+..|+++++.+|.+.
T Consensus 355 ~kal~l-~P~~~~~~~~la~~~~~~g~~~eA~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~kal~l~P~~~ 433 (615)
T TIGR00990 355 SKSIEL-DPRVTQSYIKRASMNLELGDPDKAEEDFDKALKLNSEDPDIYYHRAQLHFIKGEFAQAGKDYQKSIDLDPDFI 433 (615)
T ss_pred HHHHHc-CCCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCccCH
Confidence 999987 8999999999999999999999999999999999999999999999999999999999999999999999763
Q ss_pred CCCCCChhhhHHHHHHHHHHHHHhcCCchhHHhhhhhhhhhhHHHHHHHHHhhhhhccchhhHHHHHhHhcCCCCCcccc
Q 003563 382 NSDKSNPWWLNEKIIMKLCHIYRAKGMPEDFVDAIFPLVCESLCVEALRQKVKVKRRLTKGILQQRTKIYNNLPTDSILC 461 (810)
Q Consensus 382 ~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 461 (810)
.++..+|.++...|++++|+..+..+++.
T Consensus 434 ------------~~~~~la~~~~~~g~~~eA~~~~~~al~~--------------------------------------- 462 (615)
T TIGR00990 434 ------------FSHIQLGVTQYKEGSIASSMATFRRCKKN--------------------------------------- 462 (615)
T ss_pred ------------HHHHHHHHHHHHCCCHHHHHHHHHHHHHh---------------------------------------
Confidence 47889999999999999999998876643
Q ss_pred CCCCCCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccccCCCCCCchhhhhccCCCCCCCCCCchhhHHHHHHHHHH
Q 003563 462 GIRPAAPKSELLVAARARKKIQKKEALKEEKKALAKAAGVEWHSDDTDDESQQEAFREPPLPNLLKNEENQCLIIDLCKA 541 (810)
Q Consensus 462 ~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 541 (810)
.|+...++..++.+
T Consensus 463 ------------------------------------------------------------------~P~~~~~~~~lg~~ 476 (615)
T TIGR00990 463 ------------------------------------------------------------------FPEAPDVYNYYGEL 476 (615)
T ss_pred ------------------------------------------------------------------CCCChHHHHHHHHH
Confidence 12233466678889
Q ss_pred HHhhhcHHHHHHHHHHHHhhhhccCChhHHHHHHH--hhhhhhccccCCchhHHHHHHHHHhCCCChhHhHHHHHHHHhh
Q 003563 542 LASLQRYEEASEIINLSMRLAYNILPLEKKEELRS--LGAKMAYDSTDPNHGFDCAKYILQLHPYSLSAWNCYYKVLSRM 619 (810)
Q Consensus 542 ~~~~~~~~eA~~~~~~al~~~~~~~~~~~~~~l~~--~~~~~~~~~~~~~~a~~~~r~~~~~~p~~~~~~~~~~~~~~~~ 619 (810)
+...|++++|+..++.++.+.+.. .......+.+ ....+....|++++|..++++++..+|.+..+|
T Consensus 477 ~~~~g~~~~A~~~~~~Al~l~p~~-~~~~~~~~~l~~~a~~~~~~~~~~~eA~~~~~kAl~l~p~~~~a~---------- 545 (615)
T TIGR00990 477 LLDQNKFDEAIEKFDTAIELEKET-KPMYMNVLPLINKALALFQWKQDFIEAENLCEKALIIDPECDIAV---------- 545 (615)
T ss_pred HHHccCHHHHHHHHHHHHhcCCcc-ccccccHHHHHHHHHHHHHHhhhHHHHHHHHHHHHhcCCCcHHHH----------
Confidence 999999999999999999865431 1100011111 111111124666777777776666666554433
Q ss_pred cccccccchhhHHHHHHHHhcCCCCCchhhhcchhhhccchHHHHHHHHHHHhhCCCChHH
Q 003563 620 GKINSKHSKHSKFIRYLRAKYKDCVPPIIISGHQFTMASHHQDAARCYLEAYKLLPENPLI 680 (810)
Q Consensus 620 ~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~g~~~~~~~~~~~Ai~~y~~a~~~~p~~p~~ 680 (810)
...|.++...|++++|+.+|.+|.++.+.....
T Consensus 546 ----------------------------~~la~~~~~~g~~~eAi~~~e~A~~l~~~~~e~ 578 (615)
T TIGR00990 546 ----------------------------ATMAQLLLQQGDVDEALKLFERAAELARTEGEL 578 (615)
T ss_pred ----------------------------HHHHHHHHHccCHHHHHHHHHHHHHHhccHHHH
Confidence 333777778889999999999999998875543
No 14
>PRK15174 Vi polysaccharide export protein VexE; Provisional
Probab=100.00 E-value=5.3e-30 Score=287.23 Aligned_cols=338 Identities=14% Similarity=0.058 Sum_probs=315.5
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcC
Q 003563 36 MLGEASLQYAYGNFEQAISLLKEVVRLSPNLPETYNTLGLAHSALGNHKSAFDFYVIAAHLSPKDSALWKQLLTFAVQKG 115 (810)
Q Consensus 36 ~l~~a~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~p~~~~~~~~la~~~~~~g 115 (810)
+..-+..+...|++++|+.+++.++...|+++++++.+|.+....|++++|+..+++++..+|+++.++..+|.++...|
T Consensus 45 ~~~~~~~~~~~g~~~~A~~l~~~~l~~~p~~~~~l~~l~~~~l~~g~~~~A~~~l~~~l~~~P~~~~a~~~la~~l~~~g 124 (656)
T PRK15174 45 IILFAIACLRKDETDVGLTLLSDRVLTAKNGRDLLRRWVISPLASSQPDAVLQVVNKLLAVNVCQPEDVLLVASVLLKSK 124 (656)
T ss_pred HHHHHHHHHhcCCcchhHHHhHHHHHhCCCchhHHHHHhhhHhhcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHcC
Confidence 44556778999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCChHHHHHHHHHH
Q 003563 116 DTAQAMYYIRQAIRAEPKDISLRIHLASFYVEIGDYEKAAESYEQIQKLFPDNVDATKTGAQLFLKCGQTARSIGILEEY 195 (810)
Q Consensus 116 ~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~ 195 (810)
++++|+..++++++.+|+++.++..++.++...|++++|+..+++++...|+++.++..++ .+...|++++|+..++++
T Consensus 125 ~~~~Ai~~l~~Al~l~P~~~~a~~~la~~l~~~g~~~eA~~~~~~~~~~~P~~~~a~~~~~-~l~~~g~~~eA~~~~~~~ 203 (656)
T PRK15174 125 QYATVADLAEQAWLAFSGNSQIFALHLRTLVLMDKELQAISLARTQAQEVPPRGDMIATCL-SFLNKSRLPEDHDLARAL 203 (656)
T ss_pred CHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHCCChHHHHHHHHHHHHhCCCCHHHHHHHH-HHHHcCCHHHHHHHHHHH
Confidence 9999999999999999999999999999999999999999999999999999998887765 488999999999999999
Q ss_pred HhhCCCCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhcCCCCCcHHHHHHHHHHHHhcCCHHH----HHHHHHHhhc
Q 003563 196 LKVHPSDADLSVIDLLVAILMENNAYEKTLQHIEHAQIVRFSGKELPLKLKVKAGICYLRLGNMEK----AEILFADLQW 271 (810)
Q Consensus 196 l~~~p~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~----A~~~~~~~~~ 271 (810)
++..|.... .....++.++...|++++|+..+++++.. .+....++..+|.++...|++++ |+..|++++.
T Consensus 204 l~~~~~~~~-~~~~~l~~~l~~~g~~~eA~~~~~~al~~----~p~~~~~~~~Lg~~l~~~G~~~eA~~~A~~~~~~Al~ 278 (656)
T PRK15174 204 LPFFALERQ-ESAGLAVDTLCAVGKYQEAIQTGESALAR----GLDGAALRRSLGLAYYQSGRSREAKLQAAEHWRHALQ 278 (656)
T ss_pred HhcCCCcch-hHHHHHHHHHHHCCCHHHHHHHHHHHHhc----CCCCHHHHHHHHHHHHHcCCchhhHHHHHHHHHHHHh
Confidence 988764433 24456788999999999999999999988 67788999999999999999986 8999999999
Q ss_pred cCCchhHhHHHHHHHHHHHcCCcHHHHHHHHHHHhccCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHhhcCCCHHHHH
Q 003563 272 KNAIDHADLITEVADTLMSLGHSNSALKYYHFLETNAGTDNGYLYLKLAECYLSLKERAHAIMFFYKALDRFEDNIDARL 351 (810)
Q Consensus 272 ~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~ 351 (810)
..|. ++.++..+|.++...|++++|+..+++++.. .|+++.++..+|.++...|++++|+..|++++..+|++..++.
T Consensus 279 l~P~-~~~a~~~lg~~l~~~g~~~eA~~~l~~al~l-~P~~~~a~~~La~~l~~~G~~~eA~~~l~~al~~~P~~~~~~~ 356 (656)
T PRK15174 279 FNSD-NVRIVTLYADALIRTGQNEKAIPLLQQSLAT-HPDLPYVRAMYARALRQVGQYTAASDEFVQLAREKGVTSKWNR 356 (656)
T ss_pred hCCC-CHHHHHHHHHHHHHCCCHHHHHHHHHHHHHh-CCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCccchHHHH
Confidence 9885 8899999999999999999999999999987 8999999999999999999999999999999999999988888
Q ss_pred HHHHHHHHcCCHHHHHHhcCCCCCCCcccC
Q 003563 352 TLASLLLEEAKEEEAITLLSPPKDLDSLDM 381 (810)
Q Consensus 352 ~la~~~~~~g~~~~A~~~~~~a~~~~~~~~ 381 (810)
.++.++...|++++|+..|+++++.+|...
T Consensus 357 ~~a~al~~~G~~deA~~~l~~al~~~P~~~ 386 (656)
T PRK15174 357 YAAAALLQAGKTSEAESVFEHYIQARASHL 386 (656)
T ss_pred HHHHHHHHCCCHHHHHHHHHHHHHhChhhc
Confidence 889999999999999999999999999764
No 15
>PRK15174 Vi polysaccharide export protein VexE; Provisional
Probab=99.97 E-value=2.9e-28 Score=273.27 Aligned_cols=361 Identities=10% Similarity=0.019 Sum_probs=317.5
Q ss_pred HcCCHHHHHHHHHHHHH---hCCCChHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCHHHHH
Q 003563 45 AYGNFEQAISLLKEVVR---LSPNLPETYNTLGLAHSALGNHKSAFDFYVIAAHLSPKDSALWKQLLTFAVQKGDTAQAM 121 (810)
Q Consensus 45 ~~g~~~~A~~~~~~~l~---~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~p~~~~~~~~la~~~~~~g~~~~A~ 121 (810)
++.+++.---++...-+ ...++.......+......|++++|+..+..++...|.+++++..+|.+....|++++|+
T Consensus 17 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~l~~~~l~~~p~~~~~l~~l~~~~l~~g~~~~A~ 96 (656)
T PRK15174 17 KQEDWEGLCLYFSQHPEKVRDSAGNEQNIILFAIACLRKDETDVGLTLLSDRVLTAKNGRDLLRRWVISPLASSQPDAVL 96 (656)
T ss_pred hhhchhhHhHHhhcccHhhhhhcccccCHHHHHHHHHhcCCcchhHHHhHHHHHhCCCchhHHHHHhhhHhhcCCHHHHH
Confidence 34444444444443322 233445556777888899999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHhhCCC
Q 003563 122 YYIRQAIRAEPKDISLRIHLASFYVEIGDYEKAAESYEQIQKLFPDNVDATKTGAQLFLKCGQTARSIGILEEYLKVHPS 201 (810)
Q Consensus 122 ~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~ 201 (810)
..+++++..+|+++.++..+|.++...|++++|+..|+++++.+|+++.++..++.++...|++++|+..+++++...|+
T Consensus 97 ~~l~~~l~~~P~~~~a~~~la~~l~~~g~~~~Ai~~l~~Al~l~P~~~~a~~~la~~l~~~g~~~eA~~~~~~~~~~~P~ 176 (656)
T PRK15174 97 QVVNKLLAVNVCQPEDVLLVASVLLKSKQYATVADLAEQAWLAFSGNSQIFALHLRTLVLMDKELQAISLARTQAQEVPP 176 (656)
T ss_pred HHHHHHHHhCCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHCCChHHHHHHHHHHHHhCCC
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999998
Q ss_pred CCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhcCCCCCcHHHHHHHHHHHHhcCCHHHHHHHHHHhhccCCchhHhHH
Q 003563 202 DADLSVIDLLVAILMENNAYEKTLQHIEHAQIVRFSGKELPLKLKVKAGICYLRLGNMEKAEILFADLQWKNAIDHADLI 281 (810)
Q Consensus 202 ~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~ 281 (810)
+.. .+..++ .+...|++++|+..+++++...+ .........++.++...|++++|+..+++++...|. ++.++
T Consensus 177 ~~~--a~~~~~-~l~~~g~~~eA~~~~~~~l~~~~---~~~~~~~~~l~~~l~~~g~~~eA~~~~~~al~~~p~-~~~~~ 249 (656)
T PRK15174 177 RGD--MIATCL-SFLNKSRLPEDHDLARALLPFFA---LERQESAGLAVDTLCAVGKYQEAIQTGESALARGLD-GAALR 249 (656)
T ss_pred CHH--HHHHHH-HHHHcCCHHHHHHHHHHHHhcCC---CcchhHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCC-CHHHH
Confidence 775 444443 47889999999999999887632 122334456688899999999999999999988875 88999
Q ss_pred HHHHHHHHHcCCcHH----HHHHHHHHHhccCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHhhcCCCHHHHHHHHHHH
Q 003563 282 TEVADTLMSLGHSNS----ALKYYHFLETNAGTDNGYLYLKLAECYLSLKERAHAIMFFYKALDRFEDNIDARLTLASLL 357 (810)
Q Consensus 282 ~~la~~~~~~~~~~~----A~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~ 357 (810)
..+|.++...|++++ |+..|++++.. .|+++.++..+|.++...|++++|+..++++++.+|+++.++..++.++
T Consensus 250 ~~Lg~~l~~~G~~~eA~~~A~~~~~~Al~l-~P~~~~a~~~lg~~l~~~g~~~eA~~~l~~al~l~P~~~~a~~~La~~l 328 (656)
T PRK15174 250 RSLGLAYYQSGRSREAKLQAAEHWRHALQF-NSDNVRIVTLYADALIRTGQNEKAIPLLQQSLATHPDLPYVRAMYARAL 328 (656)
T ss_pred HHHHHHHHHcCCchhhHHHHHHHHHHHHhh-CCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHH
Confidence 999999999999996 89999999987 8999999999999999999999999999999999999999999999999
Q ss_pred HHcCCHHHHHHhcCCCCCCCcccCCCCCCChhhhHHHHHHHHHHHHHhcCCchhHHhhhhhhhhhhHH
Q 003563 358 LEEAKEEEAITLLSPPKDLDSLDMNSDKSNPWWLNEKIIMKLCHIYRAKGMPEDFVDAIFPLVCESLC 425 (810)
Q Consensus 358 ~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~~~ 425 (810)
...|++++|+..+++++..+|... .....+|.++...|++++|+..|.++++..++
T Consensus 329 ~~~G~~~eA~~~l~~al~~~P~~~------------~~~~~~a~al~~~G~~deA~~~l~~al~~~P~ 384 (656)
T PRK15174 329 RQVGQYTAASDEFVQLAREKGVTS------------KWNRYAAAALLQAGKTSEAESVFEHYIQARAS 384 (656)
T ss_pred HHCCCHHHHHHHHHHHHHhCccch------------HHHHHHHHHHHHCCCHHHHHHHHHHHHHhChh
Confidence 999999999999999999888653 35566789999999999999999999987544
No 16
>PRK10049 pgaA outer membrane protein PgaA; Provisional
Probab=99.97 E-value=3.9e-27 Score=270.18 Aligned_cols=423 Identities=14% Similarity=0.093 Sum_probs=288.4
Q ss_pred HHHHHcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCHHHH
Q 003563 41 SLQYAYGNFEQAISLLKEVVRLSPNLPETYNTLGLAHSALGNHKSAFDFYVIAAHLSPKDSALWKQLLTFAVQKGDTAQA 120 (810)
Q Consensus 41 ~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~p~~~~~~~~la~~~~~~g~~~~A 120 (810)
.+..-.|++++|+..+.++...+|..+.++..+|.++...|++++|+..|++++..+|.++.++..++.++...|++++|
T Consensus 23 ~ia~~~g~~~~A~~~~~~~~~~~~~~a~~~~~lA~~~~~~g~~~~A~~~~~~al~~~P~~~~a~~~la~~l~~~g~~~eA 102 (765)
T PRK10049 23 QIALWAGQDAEVITVYNRYRVHMQLPARGYAAVAVAYRNLKQWQNSLTLWQKALSLEPQNDDYQRGLILTLADAGQYDEA 102 (765)
T ss_pred HHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHH
Confidence 44577888888888888888878888888888888888888888888888888888888888888888888888888888
Q ss_pred HHHHHHHHHcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHhhCC
Q 003563 121 MYYIRQAIRAEPKDISLRIHLASFYVEIGDYEKAAESYEQIQKLFPDNVDATKTGAQLFLKCGQTARSIGILEEYLKVHP 200 (810)
Q Consensus 121 ~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p 200 (810)
+..++++++..|+++. +..+|.++...|++++|+..++++++..|+++.++..++.++...|..++|+..++++.. .|
T Consensus 103 ~~~l~~~l~~~P~~~~-~~~la~~l~~~g~~~~Al~~l~~al~~~P~~~~~~~~la~~l~~~~~~e~Al~~l~~~~~-~p 180 (765)
T PRK10049 103 LVKAKQLVSGAPDKAN-LLALAYVYKRAGRHWDELRAMTQALPRAPQTQQYPTEYVQALRNNRLSAPALGAIDDANL-TP 180 (765)
T ss_pred HHHHHHHHHhCCCCHH-HHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCChHHHHHHHHhCCC-CH
Confidence 8888888888888888 888888888888888888888888888888888888888888888888888888877665 44
Q ss_pred CCCCh---HHHHHHHHHHHHcCCHHHHHHHHHHHHHHhcCCCCCcHHHHHHHHHHHHhcCCH---HHHHHHHHHhhcc--
Q 003563 201 SDADL---SVIDLLVAILMENNAYEKTLQHIEHAQIVRFSGKELPLKLKVKAGICYLRLGNM---EKAEILFADLQWK-- 272 (810)
Q Consensus 201 ~~~~~---~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~---~~A~~~~~~~~~~-- 272 (810)
+.... .....+..+....+. ...+++ ++|+..++.++..
T Consensus 181 ~~~~~l~~~~~~~~~r~~~~~~~---------------------------------~~~~r~~~ad~Al~~~~~ll~~~~ 227 (765)
T PRK10049 181 AEKRDLEADAAAELVRLSFMPTR---------------------------------SEKERYAIADRALAQYDALEALWH 227 (765)
T ss_pred HHHHHHHHHHHHHHHHhhccccc---------------------------------ChhHHHHHHHHHHHHHHHHHhhcc
Confidence 32100 000111111111100 111112 4445555544422
Q ss_pred -CCch---hHhHHHHHHHHHHHcCCcHHHHHHHHHHHhccCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHhhcCCC--
Q 003563 273 -NAID---HADLITEVADTLMSLGHSNSALKYYHFLETNAGTDNGYLYLKLAECYLSLKERAHAIMFFYKALDRFEDN-- 346 (810)
Q Consensus 273 -~~~~---~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~-- 346 (810)
+|.. ...+.......+...|++++|+..|++++....+....+...+|.++..+|++++|+..|+++++.+|.+
T Consensus 228 ~~p~~~~~~~~a~~d~l~~Ll~~g~~~eA~~~~~~ll~~~~~~P~~a~~~la~~yl~~g~~e~A~~~l~~~l~~~p~~~~ 307 (765)
T PRK10049 228 DNPDATADYQRARIDRLGALLARDRYKDVISEYQRLKAEGQIIPPWAQRWVASAYLKLHQPEKAQSILTELFYHPETIAD 307 (765)
T ss_pred cCCccchHHHHHHHHHHHHHHHhhhHHHHHHHHHHhhccCCCCCHHHHHHHHHHHHhcCCcHHHHHHHHHHhhcCCCCCC
Confidence 1211 1111122122234556666666666666544211112223334666666666666666666666665544
Q ss_pred --HHHHHHHHHHHHHcCCHHHHHHhcCCCCCCCcccCC-----CCCCChhhhHHHHHHHHHHHHHhcCCchhHHhhhhhh
Q 003563 347 --IDARLTLASLLLEEAKEEEAITLLSPPKDLDSLDMN-----SDKSNPWWLNEKIIMKLCHIYRAKGMPEDFVDAIFPL 419 (810)
Q Consensus 347 --~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~-----~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~ 419 (810)
......++.++.+.|++++|+..++++....|.... ...++..| ..+...++.++...|++++|++.+.++
T Consensus 308 ~~~~~~~~L~~a~~~~g~~~eA~~~l~~~~~~~P~~~~~~~~~~~~p~~~~--~~a~~~~a~~l~~~g~~~eA~~~l~~a 385 (765)
T PRK10049 308 LSDEELADLFYSLLESENYPGALTVTAHTINNSPPFLRLYGSPTSIPNDDW--LQGQSLLSQVAKYSNDLPQAEMRAREL 385 (765)
T ss_pred CChHHHHHHHHHHHhcccHHHHHHHHHHHhhcCCceEeecCCCCCCCCchH--HHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 344555566666666666666666666655553210 01111112 357788999999999999999988776
Q ss_pred hhhhHHHHHHHHHhhhhhccchhhHHHHHhHhcCCCCCccccCCCCCCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Q 003563 420 VCESLCVEALRQKVKVKRRLTKGILQQRTKIYNNLPTDSILCGIRPAAPKSELLVAARARKKIQKKEALKEEKKALAKAA 499 (810)
Q Consensus 420 l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~~~~~~~~ 499 (810)
+..
T Consensus 386 l~~----------------------------------------------------------------------------- 388 (765)
T PRK10049 386 AYN----------------------------------------------------------------------------- 388 (765)
T ss_pred HHh-----------------------------------------------------------------------------
Confidence 644
Q ss_pred ccccCCCCCCchhhhhccCCCCCCCCCCchhhHHHHHHHHHHHHhhhcHHHHHHHHHHHHhhhhccCChhHHHHHHHhhh
Q 003563 500 GVEWHSDDTDDESQQEAFREPPLPNLLKNEENQCLIIDLCKALASLQRYEEASEIINLSMRLAYNILPLEKKEELRSLGA 579 (810)
Q Consensus 500 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~eA~~~~~~al~~~~~~~~~~~~~~l~~~~~ 579 (810)
.|++..+.+.++.++...|++++|++.++.++.+.|. ...+.+..+
T Consensus 389 ----------------------------~P~n~~l~~~lA~l~~~~g~~~~A~~~l~~al~l~Pd------~~~l~~~~a 434 (765)
T PRK10049 389 ----------------------------APGNQGLRIDYASVLQARGWPRAAENELKKAEVLEPR------NINLEVEQA 434 (765)
T ss_pred ----------------------------CCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCC------ChHHHHHHH
Confidence 2344568888999999999999999999999975533 333555566
Q ss_pred hhhccccCCchhHHHHHHHHHhCCCChhHhHH
Q 003563 580 KMAYDSTDPNHGFDCAKYILQLHPYSLSAWNC 611 (810)
Q Consensus 580 ~~~~~~~~~~~a~~~~r~~~~~~p~~~~~~~~ 611 (810)
.++...|++++|...++.++...|+++.+..+
T Consensus 435 ~~al~~~~~~~A~~~~~~ll~~~Pd~~~~~~~ 466 (765)
T PRK10049 435 WTALDLQEWRQMDVLTDDVVAREPQDPGVQRL 466 (765)
T ss_pred HHHHHhCCHHHHHHHHHHHHHhCCCCHHHHHH
Confidence 67778899999999999999999999876654
No 17
>PRK10049 pgaA outer membrane protein PgaA; Provisional
Probab=99.97 E-value=6e-27 Score=268.63 Aligned_cols=377 Identities=12% Similarity=0.056 Sum_probs=317.3
Q ss_pred CHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCCCHHHHHHHHH
Q 003563 30 SPGVTKMLGEASLQYAYGNFEQAISLLKEVVRLSPNLPETYNTLGLAHSALGNHKSAFDFYVIAAHLSPKDSALWKQLLT 109 (810)
Q Consensus 30 ~~~~~~~l~~a~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~p~~~~~~~~la~ 109 (810)
+.....+...|..+...|++++|+..+++++..+|.++.++..+|.++...|++++|+..+++++...|+++. +..+|.
T Consensus 46 ~~~a~~~~~lA~~~~~~g~~~~A~~~~~~al~~~P~~~~a~~~la~~l~~~g~~~eA~~~l~~~l~~~P~~~~-~~~la~ 124 (765)
T PRK10049 46 QLPARGYAAVAVAYRNLKQWQNSLTLWQKALSLEPQNDDYQRGLILTLADAGQYDEALVKAKQLVSGAPDKAN-LLALAY 124 (765)
T ss_pred CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHH-HHHHHH
Confidence 3344457788999999999999999999999999999999999999999999999999999999999999999 999999
Q ss_pred HHHHcCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHH-----HHHHHHHHHH----
Q 003563 110 FAVQKGDTAQAMYYIRQAIRAEPKDISLRIHLASFYVEIGDYEKAAESYEQIQKLFPDNVD-----ATKTGAQLFL---- 180 (810)
Q Consensus 110 ~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~-----~~~~la~~~~---- 180 (810)
++...|++++|+..++++++..|+++.++..++.++...|..++|+..++++.. .|+... ....+..+..
T Consensus 125 ~l~~~g~~~~Al~~l~~al~~~P~~~~~~~~la~~l~~~~~~e~Al~~l~~~~~-~p~~~~~l~~~~~~~~~r~~~~~~~ 203 (765)
T PRK10049 125 VYKRAGRHWDELRAMTQALPRAPQTQQYPTEYVQALRNNRLSAPALGAIDDANL-TPAEKRDLEADAAAELVRLSFMPTR 203 (765)
T ss_pred HHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCChHHHHHHHHhCCC-CHHHHHHHHHHHHHHHHHhhccccc
Confidence 999999999999999999999999999999999999999999999999988776 554311 1222222222
Q ss_pred -HcCCh---HHHHHHHHHHHhhCCCCCChH-----HHHH-HHHHHHHcCCHHHHHHHHHHHHHHhcCCCCCcHHHHHHHH
Q 003563 181 -KCGQT---ARSIGILEEYLKVHPSDADLS-----VIDL-LVAILMENNAYEKTLQHIEHAQIVRFSGKELPLKLKVKAG 250 (810)
Q Consensus 181 -~~g~~---~~A~~~~~~~l~~~p~~~~~~-----~~~~-la~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~la 250 (810)
..+++ ++|++.++.+++..|.++... +... ++ .+...|++++|+..|++++.. + .+.+..+...++
T Consensus 204 ~~~~r~~~ad~Al~~~~~ll~~~~~~p~~~~~~~~a~~d~l~-~Ll~~g~~~eA~~~~~~ll~~-~--~~~P~~a~~~la 279 (765)
T PRK10049 204 SEKERYAIADRALAQYDALEALWHDNPDATADYQRARIDRLG-ALLARDRYKDVISEYQRLKAE-G--QIIPPWAQRWVA 279 (765)
T ss_pred ChhHHHHHHHHHHHHHHHHHhhcccCCccchHHHHHHHHHHH-HHHHhhhHHHHHHHHHHhhcc-C--CCCCHHHHHHHH
Confidence 22334 789999999997755554321 1112 34 346779999999999998876 1 123444555579
Q ss_pred HHHHhcCCHHHHHHHHHHhhccCCch---hHhHHHHHHHHHHHcCCcHHHHHHHHHHHhccCC-------------C--C
Q 003563 251 ICYLRLGNMEKAEILFADLQWKNAID---HADLITEVADTLMSLGHSNSALKYYHFLETNAGT-------------D--N 312 (810)
Q Consensus 251 ~~~~~~g~~~~A~~~~~~~~~~~~~~---~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~-------------~--~ 312 (810)
.++...|++++|+.+|++++...|.. .......++.++...|++++|+..++.+... .| + .
T Consensus 280 ~~yl~~g~~e~A~~~l~~~l~~~p~~~~~~~~~~~~L~~a~~~~g~~~eA~~~l~~~~~~-~P~~~~~~~~~~~~p~~~~ 358 (765)
T PRK10049 280 SAYLKLHQPEKAQSILTELFYHPETIADLSDEELADLFYSLLESENYPGALTVTAHTINN-SPPFLRLYGSPTSIPNDDW 358 (765)
T ss_pred HHHHhcCCcHHHHHHHHHHhhcCCCCCCCChHHHHHHHHHHHhcccHHHHHHHHHHHhhc-CCceEeecCCCCCCCCchH
Confidence 99999999999999999998766542 1356777888899999999999999998865 33 2 2
Q ss_pred HHHHHHHHHHHHHccCHHHHHHHHHHHHhhcCCCHHHHHHHHHHHHHcCCHHHHHHhcCCCCCCCcccCCCCCCChhhhH
Q 003563 313 GYLYLKLAECYLSLKERAHAIMFFYKALDRFEDNIDARLTLASLLLEEAKEEEAITLLSPPKDLDSLDMNSDKSNPWWLN 392 (810)
Q Consensus 313 ~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~ 392 (810)
..++..+|.++...|++++|+..+++++...|+++.++..+|.++...|++++|++.+++++..+|++.
T Consensus 359 ~~a~~~~a~~l~~~g~~~eA~~~l~~al~~~P~n~~l~~~lA~l~~~~g~~~~A~~~l~~al~l~Pd~~----------- 427 (765)
T PRK10049 359 LQGQSLLSQVAKYSNDLPQAEMRARELAYNAPGNQGLRIDYASVLQARGWPRAAENELKKAEVLEPRNI----------- 427 (765)
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCCh-----------
Confidence 357788999999999999999999999999999999999999999999999999999999999999874
Q ss_pred HHHHHHHHHHHHhcCCchhHHhhhhhhhhhhHH
Q 003563 393 EKIIMKLCHIYRAKGMPEDFVDAIFPLVCESLC 425 (810)
Q Consensus 393 ~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~~~ 425 (810)
.+++.+|.++...|++++|...+..+++..++
T Consensus 428 -~l~~~~a~~al~~~~~~~A~~~~~~ll~~~Pd 459 (765)
T PRK10049 428 -NLEVEQAWTALDLQEWRQMDVLTDDVVAREPQ 459 (765)
T ss_pred -HHHHHHHHHHHHhCCHHHHHHHHHHHHHhCCC
Confidence 58899999999999999999999999988665
No 18
>KOG0547 consensus Translocase of outer mitochondrial membrane complex, subunit TOM70/TOM72 [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.96 E-value=4.4e-27 Score=230.50 Aligned_cols=338 Identities=17% Similarity=0.165 Sum_probs=292.6
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCCCHHHHHHHHHHHH
Q 003563 33 VTKMLGEASLQYAYGNFEQAISLLKEVVRLSPNLPETYNTLGLAHSALGNHKSAFDFYVIAAHLSPKDSALWKQLLTFAV 112 (810)
Q Consensus 33 ~~~~l~~a~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~p~~~~~~~~la~~~~ 112 (810)
+..+-.+|+.++..|+|++||++|.++|...|+.|..|.+++-||...|+|++.++...++++++|+...++++.+..+.
T Consensus 115 A~~lK~~GN~~f~~kkY~eAIkyY~~AI~l~p~epiFYsNraAcY~~lgd~~~Vied~TkALEl~P~Y~KAl~RRA~A~E 194 (606)
T KOG0547|consen 115 AAALKTKGNKFFRNKKYDEAIKYYTQAIELCPDEPIFYSNRAACYESLGDWEKVIEDCTKALELNPDYVKALLRRASAHE 194 (606)
T ss_pred HHHHHhhhhhhhhcccHHHHHHHHHHHHhcCCCCchhhhhHHHHHHHHhhHHHHHHHHHHHhhcCcHHHHHHHHHHHHHH
Confidence 34455689999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HcCCHHHHHHHH------------------HHHHH--------------cCCC---------------------------
Q 003563 113 QKGDTAQAMYYI------------------RQAIR--------------AEPK--------------------------- 133 (810)
Q Consensus 113 ~~g~~~~A~~~~------------------~~al~--------------~~p~--------------------------- 133 (810)
.+|++++|+.-. ++.++ ..|.
T Consensus 195 ~lg~~~eal~D~tv~ci~~~F~n~s~~~~~eR~Lkk~a~~ka~e~~k~nr~p~lPS~~fi~syf~sF~~~~~~~~~~~~~ 274 (606)
T KOG0547|consen 195 QLGKFDEALFDVTVLCILEGFQNASIEPMAERVLKKQAMKKAKEKLKENRPPVLPSATFIASYFGSFHADPKPLFDNKSD 274 (606)
T ss_pred hhccHHHHHHhhhHHHHhhhcccchhHHHHHHHHHHHHHHHHHHhhcccCCCCCCcHHHHHHHHhhccccccccccCCCc
Confidence 999988876432 11111 0000
Q ss_pred -----------------------------------------C---------HHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Q 003563 134 -----------------------------------------D---------ISLRIHLASFYVEIGDYEKAAESYEQIQK 163 (810)
Q Consensus 134 -----------------------------------------~---------~~~~~~la~~~~~~g~~~~A~~~~~~~l~ 163 (810)
+ ..++...|..++-.|++-.|.+.|+.++.
T Consensus 275 ksDa~l~~~l~~l~~~~~e~Y~~a~~~~te~~~~~~~~~~~n~~d~~le~~A~al~~~gtF~fL~g~~~~a~~d~~~~I~ 354 (606)
T KOG0547|consen 275 KSDAALAEALEALEKGLEEGYLKAYDKATEECLGSESSLSVNEIDAELEYMAEALLLRGTFHFLKGDSLGAQEDFDAAIK 354 (606)
T ss_pred cchhhHHHHHHHHHhhCchhHHHHHHHHHHHhhhhhhhccccccchhHHHHHHHHHHhhhhhhhcCCchhhhhhHHHHHh
Confidence 0 12345566677778899999999999999
Q ss_pred hCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHhhCCCCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhcCCCCCcH
Q 003563 164 LFPDNVDATKTGAQLFLKCGQTARSIGILEEYLKVHPSDADLSVIDLLVAILMENNAYEKTLQHIEHAQIVRFSGKELPL 243 (810)
Q Consensus 164 ~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~ 243 (810)
++|.+...++.+|.+|....+.++-...|.++..++|.+++ +|+..|.+++-++++++|+.-|++++.+ .|.+.
T Consensus 355 l~~~~~~lyI~~a~~y~d~~~~~~~~~~F~~A~~ldp~n~d--vYyHRgQm~flL~q~e~A~aDF~Kai~L----~pe~~ 428 (606)
T KOG0547|consen 355 LDPAFNSLYIKRAAAYADENQSEKMWKDFNKAEDLDPENPD--VYYHRGQMRFLLQQYEEAIADFQKAISL----DPENA 428 (606)
T ss_pred cCcccchHHHHHHHHHhhhhccHHHHHHHHHHHhcCCCCCc--hhHhHHHHHHHHHHHHHHHHHHHHHhhc----Chhhh
Confidence 99999999999999999999999999999999999999998 8999999999999999999999999999 78888
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHhhccCCchhHhHHHHHHHHHHHcCCcHHHHHHHHHHHhccCCC------CHHHHH
Q 003563 244 KLKVKAGICYLRLGNMEKAEILFADLQWKNAIDHADLITEVADTLMSLGHSNSALKYYHFLETNAGTD------NGYLYL 317 (810)
Q Consensus 244 ~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~------~~~~~~ 317 (810)
..+..++.+.+++++++++...|+.+....|. .++++...|.++..++++++|++.|+.++.+ .|. ++..+.
T Consensus 429 ~~~iQl~~a~Yr~~k~~~~m~~Fee~kkkFP~-~~Evy~~fAeiLtDqqqFd~A~k~YD~ai~L-E~~~~~~~v~~~plV 506 (606)
T KOG0547|consen 429 YAYIQLCCALYRQHKIAESMKTFEEAKKKFPN-CPEVYNLFAEILTDQQQFDKAVKQYDKAIEL-EPREHLIIVNAAPLV 506 (606)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCC-CchHHHHHHHHHhhHHhHHHHHHHHHHHHhh-ccccccccccchhhh
Confidence 89999999999999999999999999999885 8999999999999999999999999999988 454 444444
Q ss_pred HHHHHHH-HccCHHHHHHHHHHHHhhcCCCHHHHHHHHHHHHHcCCHHHHHHhcCCCCCCCc
Q 003563 318 KLAECYL-SLKERAHAIMFFYKALDRFEDNIDARLTLASLLLEEAKEEEAITLLSPPKDLDS 378 (810)
Q Consensus 318 ~la~~~~-~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~ 378 (810)
.-|.+.. -.+++..|+..++++++++|....++..||.+..++|+.++|+++|+++..+..
T Consensus 507 ~Ka~l~~qwk~d~~~a~~Ll~KA~e~Dpkce~A~~tlaq~~lQ~~~i~eAielFEksa~lAr 568 (606)
T KOG0547|consen 507 HKALLVLQWKEDINQAENLLRKAIELDPKCEQAYETLAQFELQRGKIDEAIELFEKSAQLAR 568 (606)
T ss_pred hhhHhhhchhhhHHHHHHHHHHHHccCchHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHH
Confidence 4433322 358899999999999999999999999999999999999999999998766544
No 19
>PRK14574 hmsH outer membrane protein; Provisional
Probab=99.96 E-value=2e-24 Score=241.67 Aligned_cols=462 Identities=13% Similarity=0.064 Sum_probs=355.9
Q ss_pred HHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCCCHHHHHHHHHH
Q 003563 31 PGVTKMLGEASLQYAYGNFEQAISLLKEVVRLSPNLPETYNTLGLAHSALGNHKSAFDFYVIAAHLSPKDSALWKQLLTF 110 (810)
Q Consensus 31 ~~~~~~l~~a~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~p~~~~~~~~la~~ 110 (810)
..+...+.+|...++.|+++.|+..|+++++.+|+++.+...++.++...|+.++|+.++++++.-.|........+|.+
T Consensus 32 ~~~~~~y~~aii~~r~Gd~~~Al~~L~qaL~~~P~~~~av~dll~l~~~~G~~~~A~~~~eka~~p~n~~~~~llalA~l 111 (822)
T PRK14574 32 AMADTQYDSLIIRARAGDTAPVLDYLQEESKAGPLQSGQVDDWLQIAGWAGRDQEVIDVYERYQSSMNISSRGLASAARA 111 (822)
T ss_pred cchhHHHHHHHHHHhCCCHHHHHHHHHHHHhhCccchhhHHHHHHHHHHcCCcHHHHHHHHHhccCCCCCHHHHHHHHHH
Confidence 34557788999999999999999999999999999975555888999999999999999999994445555556666889
Q ss_pred HHHcCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCChHHHHH
Q 003563 111 AVQKGDTAQAMYYIRQAIRAEPKDISLRIHLASFYVEIGDYEKAAESYEQIQKLFPDNVDATKTGAQLFLKCGQTARSIG 190 (810)
Q Consensus 111 ~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~ 190 (810)
+..+|++++|+..|+++++.+|+++.++..++.++...++.++|++.++++...+|.+... ..++.++...++..+|++
T Consensus 112 y~~~gdyd~Aiely~kaL~~dP~n~~~l~gLa~~y~~~~q~~eAl~~l~~l~~~dp~~~~~-l~layL~~~~~~~~~AL~ 190 (822)
T PRK14574 112 YRNEKRWDQALALWQSSLKKDPTNPDLISGMIMTQADAGRGGVVLKQATELAERDPTVQNY-MTLSYLNRATDRNYDALQ 190 (822)
T ss_pred HHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHhhcCCHHHHHHHHHHhcccCcchHHH-HHHHHHHHhcchHHHHHH
Confidence 9999999999999999999999999999999999999999999999999999999986665 666777777888878999
Q ss_pred HHHHHHhhCCCCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhcCCCCCcHHHHHHHHHHHHhc---------C---C
Q 003563 191 ILEEYLKVHPSDADLSVIDLLVAILMENNAYEKTLQHIEHAQIVRFSGKELPLKLKVKAGICYLRL---------G---N 258 (810)
Q Consensus 191 ~~~~~l~~~p~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~---------g---~ 258 (810)
.++++++.+|++.+ ++..+..++...|-...|.+...+--..+.+ .....+....+.-..+. . -
T Consensus 191 ~~ekll~~~P~n~e--~~~~~~~~l~~~~~~~~a~~l~~~~p~~f~~--~~~~~l~~~~~a~~vr~a~~~~~~~~~r~~~ 266 (822)
T PRK14574 191 ASSEAVRLAPTSEE--VLKNHLEILQRNRIVEPALRLAKENPNLVSA--EHYRQLERDAAAEQVRMAVLPTRSETERFDI 266 (822)
T ss_pred HHHHHHHhCCCCHH--HHHHHHHHHHHcCCcHHHHHHHHhCccccCH--HHHHHHHHHHHHHHHhhcccccccchhhHHH
Confidence 99999999999987 7788999999999999999887764333211 11111111111111111 1 2
Q ss_pred HHHHHHHHHHhhc---cCCch---hHhHHHHHHHHHHHcCCcHHHHHHHHHHHhccCCCCHHHHHHHHHHHHHccCHHHH
Q 003563 259 MEKAEILFADLQW---KNAID---HADLITEVADTLMSLGHSNSALKYYHFLETNAGTDNGYLYLKLAECYLSLKERAHA 332 (810)
Q Consensus 259 ~~~A~~~~~~~~~---~~~~~---~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A 332 (810)
.+.|+..++.++. ..|+. ...+....-.++...|++.+++..|+.+.....+-.+.+....|..|...+++++|
T Consensus 267 ~d~ala~~~~l~~~~~~~p~~~~~~~~~~~Drl~aL~~r~r~~~vi~~y~~l~~~~~~~P~y~~~a~adayl~~~~P~kA 346 (822)
T PRK14574 267 ADKALADYQNLLTRWGKDPEAQADYQRARIDRLGALLVRHQTADLIKEYEAMEAEGYKMPDYARRWAASAYIDRRLPEKA 346 (822)
T ss_pred HHHHHHHHHHHHhhccCCCccchHHHHHHHHHHHHHHHhhhHHHHHHHHHHhhhcCCCCCHHHHHHHHHHHHhcCCcHHH
Confidence 3556777777665 33432 23345566777889999999999999988664455677888999999999999999
Q ss_pred HHHHHHHHhhcC------CCHHHHHHHHHHHHHcCCHHHHHHhcCCCCCCCcccC-----CCCCCChhhhHHHHHHHHHH
Q 003563 333 IMFFYKALDRFE------DNIDARLTLASLLLEEAKEEEAITLLSPPKDLDSLDM-----NSDKSNPWWLNEKIIMKLCH 401 (810)
Q Consensus 333 ~~~~~~al~~~p------~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~-----~~~~~~~~~~~~~~~~~la~ 401 (810)
+..|+.++...| .+......|...|...+++++|..++++..+..|--. ....+++.|. +....++.
T Consensus 347 ~~l~~~~~~~~~~~~~~~~~~~~~~~L~yA~ld~e~~~~A~~~l~~~~~~~p~~~~~~~~~~~~pn~d~~--~~~~l~a~ 424 (822)
T PRK14574 347 APILSSLYYSDGKTFRNSDDLLDADDLYYSLNESEQLDKAYQFAVNYSEQTPYQVGVYGLPGKEPNDDWI--EGQTLLVQ 424 (822)
T ss_pred HHHHHHHhhccccccCCCcchHHHHHHHHHHHhcccHHHHHHHHHHHHhcCCcEEeccCCCCCCCCccHH--HHHHHHHH
Confidence 999999988653 3444467899999999999999999999887666210 1234667784 67778888
Q ss_pred HHHhcCCchhHHhhhhhhhhhhHHHHHHHHHhhhhhccchhhHHHHHhHhcCCCCCccccCCCCCCCchHHHHHHHHHHH
Q 003563 402 IYRAKGMPEDFVDAIFPLVCESLCVEALRQKVKVKRRLTKGILQQRTKIYNNLPTDSILCGIRPAAPKSELLVAARARKK 481 (810)
Q Consensus 402 ~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~ 481 (810)
++.-.|+..+|.+.+++++..
T Consensus 425 ~~~~~gdl~~Ae~~le~l~~~----------------------------------------------------------- 445 (822)
T PRK14574 425 SLVALNDLPTAQKKLEDLSST----------------------------------------------------------- 445 (822)
T ss_pred HHHHcCCHHHHHHHHHHHHHh-----------------------------------------------------------
Confidence 889999999999888877654
Q ss_pred HHHHHHHHHHHHHHHHhcccccCCCCCCchhhhhccCCCCCCCCCCchhhHHHHHHHHHHHHhhhcHHHHHHHHHHHHhh
Q 003563 482 IQKKEALKEEKKALAKAAGVEWHSDDTDDESQQEAFREPPLPNLLKNEENQCLIIDLCKALASLQRYEEASEIINLSMRL 561 (810)
Q Consensus 482 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~eA~~~~~~al~~ 561 (810)
.|.+..+.+.+|.++...|++.+|.+.++.+..+
T Consensus 446 ----------------------------------------------aP~n~~l~~~~A~v~~~Rg~p~~A~~~~k~a~~l 479 (822)
T PRK14574 446 ----------------------------------------------APANQNLRIALASIYLARDLPRKAEQELKAVESL 479 (822)
T ss_pred ----------------------------------------------CCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhhh
Confidence 2344556667777888888888888888777654
Q ss_pred hhccCChhHHHHHHHhhhhhhccccCCchhHHHHHHHHHhCCCChhHhH
Q 003563 562 AYNILPLEKKEELRSLGAKMAYDSTDPNHGFDCAKYILQLHPYSLSAWN 610 (810)
Q Consensus 562 ~~~~~~~~~~~~l~~~~~~~~~~~~~~~~a~~~~r~~~~~~p~~~~~~~ 610 (810)
.+ ....+++..+.++...+++.+|....+.++..+|++...-.
T Consensus 480 ~P------~~~~~~~~~~~~al~l~e~~~A~~~~~~l~~~~Pe~~~~~~ 522 (822)
T PRK14574 480 AP------RSLILERAQAETAMALQEWHQMELLTDDVISRSPEDIPSQE 522 (822)
T ss_pred CC------ccHHHHHHHHHHHHhhhhHHHHHHHHHHHHhhCCCchhHHH
Confidence 32 23445555555666668888888888888888888765443
No 20
>KOG2076 consensus RNA polymerase III transcription factor TFIIIC [Transcription]
Probab=99.95 E-value=1.7e-23 Score=220.95 Aligned_cols=338 Identities=19% Similarity=0.207 Sum_probs=287.4
Q ss_pred HHHHHHHHHHHHcCChHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHH
Q 003563 68 ETYNTLGLAHSALGNHKSAFDFYVIAAHLSPKDSALWKQLLTFAVQKGDTAQAMYYIRQAIRAEPKDISLRIHLASFYVE 147 (810)
Q Consensus 68 ~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~ 147 (810)
..+...|...+..|++++|...+.+++..+|.++.+|+.||.+|.++|+.+++..+.-.|-.++|++.+.|..++....+
T Consensus 140 ~~ll~eAN~lfarg~~eeA~~i~~EvIkqdp~~~~ay~tL~~IyEqrGd~eK~l~~~llAAHL~p~d~e~W~~ladls~~ 219 (895)
T KOG2076|consen 140 RQLLGEANNLFARGDLEEAEEILMEVIKQDPRNPIAYYTLGEIYEQRGDIEKALNFWLLAAHLNPKDYELWKRLADLSEQ 219 (895)
T ss_pred HHHHHHHHHHHHhCCHHHHHHHHHHHHHhCccchhhHHHHHHHHHHcccHHHHHHHHHHHHhcCCCChHHHHHHHHHHHh
Confidence 45667778888899999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHhhCCCCCCh----HHHHHHHHHHHHcCCHHH
Q 003563 148 IGDYEKAAESYEQIQKLFPDNVDATKTGAQLFLKCGQTARSIGILEEYLKVHPSDADL----SVIDLLVAILMENNAYEK 223 (810)
Q Consensus 148 ~g~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~----~~~~~la~~~~~~g~~~~ 223 (810)
+|++.+|.-+|.++++.+|.+....+..+.+|.+.|+...|...|.+++...|.. ++ ......+..+...++-+.
T Consensus 220 ~~~i~qA~~cy~rAI~~~p~n~~~~~ers~L~~~~G~~~~Am~~f~~l~~~~p~~-d~er~~d~i~~~~~~~~~~~~~e~ 298 (895)
T KOG2076|consen 220 LGNINQARYCYSRAIQANPSNWELIYERSSLYQKTGDLKRAMETFLQLLQLDPPV-DIERIEDLIRRVAHYFITHNERER 298 (895)
T ss_pred cccHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHhChHHHHHHHHHHHHhhCCch-hHHHHHHHHHHHHHHHHHhhHHHH
Confidence 9999999999999999999999999999999999999999999999999999832 22 123345677788888899
Q ss_pred HHHHHHHHHHHhcCCCCCcHHHHHHHHHHHHhcCCHHHHHHHHHHhhc----cCC-----------------------ch
Q 003563 224 TLQHIEHAQIVRFSGKELPLKLKVKAGICYLRLGNMEKAEILFADLQW----KNA-----------------------ID 276 (810)
Q Consensus 224 A~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~----~~~-----------------------~~ 276 (810)
|++.++.++.... ......-+..++.+++...+++.|......... .++ +.
T Consensus 299 a~~~le~~~s~~~--~~~~~ed~ni~ael~l~~~q~d~~~~~i~~~~~r~~e~d~~e~~~~~~~~~~~~~~~~~~~~~s~ 376 (895)
T KOG2076|consen 299 AAKALEGALSKEK--DEASLEDLNILAELFLKNKQSDKALMKIVDDRNRESEKDDSEWDTDERRREEPNALCEVGKELSY 376 (895)
T ss_pred HHHHHHHHHhhcc--ccccccHHHHHHHHHHHhHHHHHhhHHHHHHhccccCCChhhhhhhhhccccccccccCCCCCCc
Confidence 9999999987421 333445566788889999999999887766433 000 00
Q ss_pred hHh-HHHHHHHHHHHcCCcHHHHHHHHHHHhccCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHhhcC-CCHHHHHHHH
Q 003563 277 HAD-LITEVADTLMSLGHSNSALKYYHFLETNAGTDNGYLYLKLAECYLSLKERAHAIMFFYKALDRFE-DNIDARLTLA 354 (810)
Q Consensus 277 ~~~-~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p-~~~~~~~~la 354 (810)
+.. +...++.+..+.++..+++..+.........+++..++.++.++...|++.+|+.+|..+....+ ++..+|+.+|
T Consensus 377 ~l~v~rl~icL~~L~~~e~~e~ll~~l~~~n~~~~d~~dL~~d~a~al~~~~~~~~Al~~l~~i~~~~~~~~~~vw~~~a 456 (895)
T KOG2076|consen 377 DLRVIRLMICLVHLKERELLEALLHFLVEDNVWVSDDVDLYLDLADALTNIGKYKEALRLLSPITNREGYQNAFVWYKLA 456 (895)
T ss_pred cchhHhHhhhhhcccccchHHHHHHHHHHhcCChhhhHHHHHHHHHHHHhcccHHHHHHHHHHHhcCccccchhhhHHHH
Confidence 112 25666777777788888888775444333456889999999999999999999999999998876 4578999999
Q ss_pred HHHHHcCCHHHHHHhcCCCCCCCcccCCCCCCChhhhHHHHHHHHHHHHHhcCCchhHHhhhhhhh
Q 003563 355 SLLLEEAKEEEAITLLSPPKDLDSLDMNSDKSNPWWLNEKIIMKLCHIYRAKGMPEDFVDAIFPLV 420 (810)
Q Consensus 355 ~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~l 420 (810)
.+|..+|.+++|++.|++++...|++. .+...|+.+|.++|++++|++++.++.
T Consensus 457 ~c~~~l~e~e~A~e~y~kvl~~~p~~~------------D~Ri~Lasl~~~~g~~EkalEtL~~~~ 510 (895)
T KOG2076|consen 457 RCYMELGEYEEAIEFYEKVLILAPDNL------------DARITLASLYQQLGNHEKALETLEQII 510 (895)
T ss_pred HHHHHHhhHHHHHHHHHHHHhcCCCch------------hhhhhHHHHHHhcCCHHHHHHHHhccc
Confidence 999999999999999999999999875 488999999999999999999998877
No 21
>PLN03077 Protein ECB2; Provisional
Probab=99.95 E-value=1.2e-22 Score=238.77 Aligned_cols=618 Identities=14% Similarity=0.128 Sum_probs=339.1
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCChHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCC-CHHHHHHHHHHHHH
Q 003563 36 MLGEASLQYAYGNFEQAISLLKEVVRLS-PNLPETYNTLGLAHSALGNHKSAFDFYVIAAHLSPK-DSALWKQLLTFAVQ 113 (810)
Q Consensus 36 ~l~~a~~~~~~g~~~~A~~~~~~~l~~~-p~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~p~-~~~~~~~la~~~~~ 113 (810)
.-.....+...|++++|..+|....+.. +.+...+..+...+...+..+.|...+..++...+. +......+...|.+
T Consensus 54 ~n~~i~~l~~~g~~~~A~~l~~~m~~~g~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~n~li~~~~~ 133 (857)
T PLN03077 54 SNSQLRALCSHGQLEQALKLLESMQELRVPVDEDAYVALFRLCEWKRAVEEGSRVCSRALSSHPSLGVRLGNAMLSMFVR 133 (857)
T ss_pred HHHHHHHHHhCCCHHHHHHHHHHHHhcCCCCChhHHHHHHHHHhhCCCHHHHHHHHHHHHHcCCCCCchHHHHHHHHHHh
Confidence 3334456788999999999999887742 334555666666666777777777777776665543 23444555666666
Q ss_pred cCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--CCC------------------------
Q 003563 114 KGDTAQAMYYIRQAIRAEPKDISLRIHLASFYVEIGDYEKAAESYEQIQKL--FPD------------------------ 167 (810)
Q Consensus 114 ~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~--~p~------------------------ 167 (810)
.|+.+.|...|++.. +.+...|..+...|.+.|++++|+..|.++... .|+
T Consensus 134 ~g~~~~A~~~f~~m~---~~d~~~~n~li~~~~~~g~~~~A~~~f~~M~~~g~~Pd~~t~~~ll~~~~~~~~~~~~~~~~ 210 (857)
T PLN03077 134 FGELVHAWYVFGKMP---ERDLFSWNVLVGGYAKAGYFDEALCLYHRMLWAGVRPDVYTFPCVLRTCGGIPDLARGREVH 210 (857)
T ss_pred CCChHHHHHHHhcCC---CCCeeEHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCChhHHHHHHHHhCCccchhhHHHHH
Confidence 777777776666653 234556666666777777777777777666532 222
Q ss_pred ----------CHHHHHHHHHHHHHcCChHHHHHHHHHHHhhCCCCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhcC
Q 003563 168 ----------NVDATKTGAQLFLKCGQTARSIGILEEYLKVHPSDADLSVIDLLVAILMENNAYEKTLQHIEHAQIVRFS 237 (810)
Q Consensus 168 ----------~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~ 237 (810)
+..++..+...|.+.|++++|...|++... |+ . ..|+.+...|.+.|++++|+..|.+.... +
T Consensus 211 ~~~~~~g~~~~~~~~n~Li~~y~k~g~~~~A~~lf~~m~~--~d-~--~s~n~li~~~~~~g~~~eAl~lf~~M~~~-g- 283 (857)
T PLN03077 211 AHVVRFGFELDVDVVNALITMYVKCGDVVSARLVFDRMPR--RD-C--ISWNAMISGYFENGECLEGLELFFTMREL-S- 283 (857)
T ss_pred HHHHHcCCCcccchHhHHHHHHhcCCCHHHHHHHHhcCCC--CC-c--chhHHHHHHHHhCCCHHHHHHHHHHHHHc-C-
Confidence 233456777777778888888877777542 22 1 25777777777888888888887777654 1
Q ss_pred CCCCcHHHHHHHHHHHHhcCCHHHHHHHHHHhhccCCchhHhHHHHHHHHHHHcCCcHHHHHHHHHHHhccCCCCHHHHH
Q 003563 238 GKELPLKLKVKAGICYLRLGNMEKAEILFADLQWKNAIDHADLITEVADTLMSLGHSNSALKYYHFLETNAGTDNGYLYL 317 (810)
Q Consensus 238 ~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~ 317 (810)
...+...+..+...+...|+.+.|.+++..+.......+..++..+...|.+.|++++|..+|+.+.. .+...|.
T Consensus 284 -~~Pd~~ty~~ll~a~~~~g~~~~a~~l~~~~~~~g~~~d~~~~n~Li~~y~k~g~~~~A~~vf~~m~~----~d~~s~n 358 (857)
T PLN03077 284 -VDPDLMTITSVISACELLGDERLGREMHGYVVKTGFAVDVSVCNSLIQMYLSLGSWGEAEKVFSRMET----KDAVSWT 358 (857)
T ss_pred -CCCChhHHHHHHHHHHhcCChHHHHHHHHHHHHhCCccchHHHHHHHHHHHhcCCHHHHHHHHhhCCC----CCeeeHH
Confidence 12233444555556666677777777776665544434566666777777777777777777765431 2445666
Q ss_pred HHHHHHHHccCHHHHHHHHHHHHhh--cCCCHHHHHHHHHHHHHcCCHHHHHHhcCCCCCCCcccCCCCCCChhhhHHHH
Q 003563 318 KLAECYLSLKERAHAIMFFYKALDR--FEDNIDARLTLASLLLEEAKEEEAITLLSPPKDLDSLDMNSDKSNPWWLNEKI 395 (810)
Q Consensus 318 ~la~~~~~~g~~~~A~~~~~~al~~--~p~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~ 395 (810)
.+...|.+.|++++|++.|++..+. .|+. ..+..+...+.+.|++++|.++++.+.+..... +..+
T Consensus 359 ~li~~~~~~g~~~~A~~lf~~M~~~g~~Pd~-~t~~~ll~a~~~~g~~~~a~~l~~~~~~~g~~~-----------~~~~ 426 (857)
T PLN03077 359 AMISGYEKNGLPDKALETYALMEQDNVSPDE-ITIASVLSACACLGDLDVGVKLHELAERKGLIS-----------YVVV 426 (857)
T ss_pred HHHHHHHhCCCHHHHHHHHHHHHHhCCCCCc-eeHHHHHHHHhccchHHHHHHHHHHHHHhCCCc-----------chHH
Confidence 6667777777777777777766443 2433 344444456666677777776666665544321 1235
Q ss_pred HHHHHHHHHhcCCchhHHhhhhhhhhhhHHHHHHHHHhhhhhccchhhHHHHHhHhcCCCCCccccCCCCCCCchHHHHH
Q 003563 396 IMKLCHIYRAKGMPEDFVDAIFPLVCESLCVEALRQKVKVKRRLTKGILQQRTKIYNNLPTDSILCGIRPAAPKSELLVA 475 (810)
Q Consensus 396 ~~~la~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 475 (810)
+..+...|.+.|+.++|.+.|..+.+.... ..+ .+..|+.. ......+
T Consensus 427 ~n~Li~~y~k~g~~~~A~~vf~~m~~~d~v--s~~---------------------------~mi~~~~~---~g~~~eA 474 (857)
T PLN03077 427 ANALIEMYSKCKCIDKALEVFHNIPEKDVI--SWT---------------------------SIIAGLRL---NNRCFEA 474 (857)
T ss_pred HHHHHHHHHHcCCHHHHHHHHHhCCCCCee--eHH---------------------------HHHHHHHH---CCCHHHH
Confidence 566666677777777777666655432100 000 00000000 0000000
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhcccccCCCCCCchhhhhccCCCCCCCCCCchhhHHHHHHHHHHHHhhhcHHHHHHHH
Q 003563 476 ARARKKIQKKEALKEEKKALAKAAGVEWHSDDTDDESQQEAFREPPLPNLLKNEENQCLIIDLCKALASLQRYEEASEII 555 (810)
Q Consensus 476 ~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~eA~~~~ 555 (810)
...... +.. ++ .|+ ...+..+..++.+.|..+++.++.
T Consensus 475 ~~lf~~---------------m~~------------------------~~--~pd-~~t~~~lL~a~~~~g~l~~~~~i~ 512 (857)
T PLN03077 475 LIFFRQ---------------MLL------------------------TL--KPN-SVTLIAALSACARIGALMCGKEIH 512 (857)
T ss_pred HHHHHH---------------HHh------------------------CC--CCC-HhHHHHHHHHHhhhchHHHhHHHH
Confidence 000000 000 00 111 122233334556666666666666
Q ss_pred HHHHhhhhccCChhHHHHHHHhhhhhhccccCCchhHHHHHHHHHhCCCChhHhHHHHHHHHhhcccccccchhhHHHHH
Q 003563 556 NLSMRLAYNILPLEKKEELRSLGAKMAYDSTDPNHGFDCAKYILQLHPYSLSAWNCYYKVLSRMGKINSKHSKHSKFIRY 635 (810)
Q Consensus 556 ~~al~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~a~~~~r~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 635 (810)
..+++.... ++ ..+....+......|+.++|...+..+ +.+...|+.+...+...|. ...+.+.|.+
T Consensus 513 ~~~~~~g~~---~~--~~~~naLi~~y~k~G~~~~A~~~f~~~----~~d~~s~n~lI~~~~~~G~----~~~A~~lf~~ 579 (857)
T PLN03077 513 AHVLRTGIG---FD--GFLPNALLDLYVRCGRMNYAWNQFNSH----EKDVVSWNILLTGYVAHGK----GSMAVELFNR 579 (857)
T ss_pred HHHHHhCCC---cc--ceechHHHHHHHHcCCHHHHHHHHHhc----CCChhhHHHHHHHHHHcCC----HHHHHHHHHH
Confidence 665542211 11 111112222333456666666655544 3455666666666655555 3455666665
Q ss_pred HHHh--cCCCCCchhhhcchhhhccchHHHHHHHHHHHhhCCCCh--HHHHHHHHHHHHHHhCccccchhHHHHHHHHHH
Q 003563 636 LRAK--YKDCVPPIIISGHQFTMASHHQDAARCYLEAYKLLPENP--LINLCVGSALINLALGFRLQNKHQCLAQGFAFL 711 (810)
Q Consensus 636 ~~~~--~p~~~~~~~~~g~~~~~~~~~~~Ai~~y~~a~~~~p~~p--~~~l~l~~~~~~~~~~r~~~~r~~~~~q~~~~l 711 (810)
+.+. .|+.+....+. ..+...|.+++|...|....+.++-.| ....++.-.+. |...+.+|..++
T Consensus 580 M~~~g~~Pd~~T~~~ll-~a~~~~g~v~ea~~~f~~M~~~~gi~P~~~~y~~lv~~l~----------r~G~~~eA~~~~ 648 (857)
T PLN03077 580 MVESGVNPDEVTFISLL-CACSRSGMVTQGLEYFHSMEEKYSITPNLKHYACVVDLLG----------RAGKLTEAYNFI 648 (857)
T ss_pred HHHcCCCCCcccHHHHH-HHHhhcChHHHHHHHHHHHHHHhCCCCchHHHHHHHHHHH----------hCCCHHHHHHHH
Confidence 5543 23333222111 225556667777777766553322222 23334433333 222345566666
Q ss_pred HHhHhhcCCCchhhhhHHHHHHHhChhhHHHHHHHHHhccccccCCCCCCCCCCCcccccCCCCcccccHHHHHHHHHHH
Q 003563 712 YNNLRLCEHSQEALYNIARACHHVGLVSLAASYYEKVLAIKEKDYPIPKHNDKRPDLMESGESGYCDLQREAAYNLHLIY 791 (810)
Q Consensus 712 ~~y~~~~~~~~e~~ynlgr~~~~lg~~~~Ai~~Y~~vL~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~eaa~nl~~iy 791 (810)
.+-. +.| +..+|-.+=.++..-|..+.|....++++++.|++ .....-|+.||
T Consensus 649 ~~m~-~~p-d~~~~~aLl~ac~~~~~~e~~e~~a~~l~~l~p~~-------------------------~~~y~ll~n~y 701 (857)
T PLN03077 649 NKMP-ITP-DPAVWGALLNACRIHRHVELGELAAQHIFELDPNS-------------------------VGYYILLCNLY 701 (857)
T ss_pred HHCC-CCC-CHHHHHHHHHHHHHcCChHHHHHHHHHHHhhCCCC-------------------------cchHHHHHHHH
Confidence 5532 222 34555555556666666777777777777776543 11224456677
Q ss_pred HhcCCHHHHHHHHH
Q 003563 792 KNSGAVDLARQLLK 805 (810)
Q Consensus 792 ~~~g~~~~A~~~~~ 805 (810)
...|+++.|.++.+
T Consensus 702 a~~g~~~~a~~vr~ 715 (857)
T PLN03077 702 ADAGKWDEVARVRK 715 (857)
T ss_pred HHCCChHHHHHHHH
Confidence 77777777766543
No 22
>KOG0624 consensus dsRNA-activated protein kinase inhibitor P58, contains TPR and DnaJ domains [Defense mechanisms]
Probab=99.95 E-value=1.2e-24 Score=203.94 Aligned_cols=321 Identities=17% Similarity=0.147 Sum_probs=259.4
Q ss_pred CHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCCCHHHHHHHHH
Q 003563 30 SPGVTKMLGEASLQYAYGNFEQAISLLKEVVRLSPNLPETYNTLGLAHSALGNHKSAFDFYVIAAHLSPKDSALWKQLLT 109 (810)
Q Consensus 30 ~~~~~~~l~~a~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~p~~~~~~~~la~ 109 (810)
+.++...+..|..++..|++.+|+..|..+++.+|++..+++..|.+|..+|+...|+..+.+++++.|+...+....|.
T Consensus 35 ~advekhlElGk~lla~~Q~sDALt~yHaAve~dp~~Y~aifrRaT~yLAmGksk~al~Dl~rVlelKpDF~~ARiQRg~ 114 (504)
T KOG0624|consen 35 PADVEKHLELGKELLARGQLSDALTHYHAAVEGDPNNYQAIFRRATVYLAMGKSKAALQDLSRVLELKPDFMAARIQRGV 114 (504)
T ss_pred HHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHcCCchhHHHHHHHHHHHhhhcCCccchhhHHHHHhcCccHHHHHHHhch
Confidence 57899999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHcCCHHHHHHHHHHHHHcCCCCHH---H------------HHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHH
Q 003563 110 FAVQKGDTAQAMYYIRQAIRAEPKDIS---L------------RIHLASFYVEIGDYEKAAESYEQIQKLFPDNVDATKT 174 (810)
Q Consensus 110 ~~~~~g~~~~A~~~~~~al~~~p~~~~---~------------~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~ 174 (810)
+++++|.+++|..-|++++..+|.+.. + +......+...|+...|++....++++.|-+...+..
T Consensus 115 vllK~Gele~A~~DF~~vl~~~~s~~~~~eaqskl~~~~e~~~l~~ql~s~~~~GD~~~ai~~i~~llEi~~Wda~l~~~ 194 (504)
T KOG0624|consen 115 VLLKQGELEQAEADFDQVLQHEPSNGLVLEAQSKLALIQEHWVLVQQLKSASGSGDCQNAIEMITHLLEIQPWDASLRQA 194 (504)
T ss_pred hhhhcccHHHHHHHHHHHHhcCCCcchhHHHHHHHHhHHHHHHHHHHHHHHhcCCchhhHHHHHHHHHhcCcchhHHHHH
Confidence 999999999999999999999996532 2 2223334455678888888888888888888888888
Q ss_pred HHHHHHHcCChHHHHHHHHHHHhhCCCCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhcCCCCCcHHHHHHHHHHHH
Q 003563 175 GAQLFLKCGQTARSIGILEEYLKVHPSDADLSVIDLLVAILMENNAYEKTLQHIEHAQIVRFSGKELPLKLKVKAGICYL 254 (810)
Q Consensus 175 la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~la~~~~ 254 (810)
.+.+|...|++..|+.-++.+-++..++.+ .++.++.+++..|+.+.++...++++++ +|.....
T Consensus 195 Rakc~i~~~e~k~AI~Dlk~askLs~DnTe--~~ykis~L~Y~vgd~~~sL~~iRECLKl----dpdHK~C--------- 259 (504)
T KOG0624|consen 195 RAKCYIAEGEPKKAIHDLKQASKLSQDNTE--GHYKISQLLYTVGDAENSLKEIRECLKL----DPDHKLC--------- 259 (504)
T ss_pred HHHHHHhcCcHHHHHHHHHHHHhccccchH--HHHHHHHHHHhhhhHHHHHHHHHHHHcc----CcchhhH---------
Confidence 888888888888888888887777777765 6777888888888888888888888777 3332211
Q ss_pred hcCCHHHHHHHHHHhhccCCchhHhHHHHHHHHHHHcCCcHHHHHHHHHHHhccCCCCH----HHHHHHHHHHHHccCHH
Q 003563 255 RLGNMEKAEILFADLQWKNAIDHADLITEVADTLMSLGHSNSALKYYHFLETNAGTDNG----YLYLKLAECYLSLKERA 330 (810)
Q Consensus 255 ~~g~~~~A~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~----~~~~~la~~~~~~g~~~ 330 (810)
...|+++.. ..-...-+......++|.++++..+++++. .|..+ ..+..+..|+..-|++.
T Consensus 260 --------f~~YKklkK------v~K~les~e~~ie~~~~t~cle~ge~vlk~-ep~~~~ir~~~~r~~c~C~~~d~~~~ 324 (504)
T KOG0624|consen 260 --------FPFYKKLKK------VVKSLESAEQAIEEKHWTECLEAGEKVLKN-EPEETMIRYNGFRVLCTCYREDEQFG 324 (504)
T ss_pred --------HHHHHHHHH------HHHHHHHHHHHHhhhhHHHHHHHHHHHHhc-CCcccceeeeeeheeeecccccCCHH
Confidence 112222210 011122234445677888999999988876 55533 34556788899999999
Q ss_pred HHHHHHHHHHhhcCCCHHHHHHHHHHHHHcCCHHHHHHhcCCCCCCCccc
Q 003563 331 HAIMFFYKALDRFEDNIDARLTLASLLLEEAKEEEAITLLSPPKDLDSLD 380 (810)
Q Consensus 331 ~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~ 380 (810)
+|++.+.++++.+|++.+++...+..|.-...|+.|+.-|+++.+.++++
T Consensus 325 eAiqqC~evL~~d~~dv~~l~dRAeA~l~dE~YD~AI~dye~A~e~n~sn 374 (504)
T KOG0624|consen 325 EAIQQCKEVLDIDPDDVQVLCDRAEAYLGDEMYDDAIHDYEKALELNESN 374 (504)
T ss_pred HHHHHHHHHHhcCchHHHHHHHHHHHHhhhHHHHHHHHHHHHHHhcCccc
Confidence 99999999999999999999999999999999999999999999999876
No 23
>KOG0547 consensus Translocase of outer mitochondrial membrane complex, subunit TOM70/TOM72 [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.94 E-value=5.4e-25 Score=215.98 Aligned_cols=335 Identities=16% Similarity=0.130 Sum_probs=284.6
Q ss_pred HHHHHHHHHHHHcCChHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHH
Q 003563 68 ETYNTLGLAHSALGNHKSAFDFYVIAAHLSPKDSALWKQLLTFAVQKGDTAQAMYYIRQAIRAEPKDISLRIHLASFYVE 147 (810)
Q Consensus 68 ~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~ 147 (810)
..+-..|.-++..|+|++|+++|.+|+++.|+.+..+.+++-||...|+|++.++...++++++|+...+++.++..+..
T Consensus 116 ~~lK~~GN~~f~~kkY~eAIkyY~~AI~l~p~epiFYsNraAcY~~lgd~~~Vied~TkALEl~P~Y~KAl~RRA~A~E~ 195 (606)
T KOG0547|consen 116 AALKTKGNKFFRNKKYDEAIKYYTQAIELCPDEPIFYSNRAACYESLGDWEKVIEDCTKALELNPDYVKALLRRASAHEQ 195 (606)
T ss_pred HHHHhhhhhhhhcccHHHHHHHHHHHHhcCCCCchhhhhHHHHHHHHhhHHHHHHHHHHHhhcCcHHHHHHHHHHHHHHh
Confidence 45678899999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cCCHHHHHHHH------------------HHHHHh--------------CCCC---------------------------
Q 003563 148 IGDYEKAAESY------------------EQIQKL--------------FPDN--------------------------- 168 (810)
Q Consensus 148 ~g~~~~A~~~~------------------~~~l~~--------------~p~~--------------------------- 168 (810)
+|++.+|+.-. ++.++. .|.-
T Consensus 196 lg~~~eal~D~tv~ci~~~F~n~s~~~~~eR~Lkk~a~~ka~e~~k~nr~p~lPS~~fi~syf~sF~~~~~~~~~~~~~k 275 (606)
T KOG0547|consen 196 LGKFDEALFDVTVLCILEGFQNASIEPMAERVLKKQAMKKAKEKLKENRPPVLPSATFIASYFGSFHADPKPLFDNKSDK 275 (606)
T ss_pred hccHHHHHHhhhHHHHhhhcccchhHHHHHHHHHHHHHHHHHHhhcccCCCCCCcHHHHHHHHhhccccccccccCCCcc
Confidence 99988876522 111111 0000
Q ss_pred --------------------------------------------------HHHHHHHHHHHHHcCChHHHHHHHHHHHhh
Q 003563 169 --------------------------------------------------VDATKTGAQLFLKCGQTARSIGILEEYLKV 198 (810)
Q Consensus 169 --------------------------------------------------~~~~~~la~~~~~~g~~~~A~~~~~~~l~~ 198 (810)
..++...|..++-.|++-.|.+.+..++++
T Consensus 276 sDa~l~~~l~~l~~~~~e~Y~~a~~~~te~~~~~~~~~~~n~~d~~le~~A~al~~~gtF~fL~g~~~~a~~d~~~~I~l 355 (606)
T KOG0547|consen 276 SDAALAEALEALEKGLEEGYLKAYDKATEECLGSESSLSVNEIDAELEYMAEALLLRGTFHFLKGDSLGAQEDFDAAIKL 355 (606)
T ss_pred chhhHHHHHHHHHhhCchhHHHHHHHHHHHhhhhhhhccccccchhHHHHHHHHHHhhhhhhhcCCchhhhhhHHHHHhc
Confidence 012333455566778888999999999999
Q ss_pred CCCCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhcCCCCCcHHHHHHHHHHHHhcCCHHHHHHHHHHhhccCCchhH
Q 003563 199 HPSDADLSVIDLLVAILMENNAYEKTLQHIEHAQIVRFSGKELPLKLKVKAGICYLRLGNMEKAEILFADLQWKNAIDHA 278 (810)
Q Consensus 199 ~p~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~ 278 (810)
+|.+.. .|..++.+|....+.++-...|.++..+ +|.++++++..|.+++-++++++|+.-|++++..+|. +.
T Consensus 356 ~~~~~~--lyI~~a~~y~d~~~~~~~~~~F~~A~~l----dp~n~dvYyHRgQm~flL~q~e~A~aDF~Kai~L~pe-~~ 428 (606)
T KOG0547|consen 356 DPAFNS--LYIKRAAAYADENQSEKMWKDFNKAEDL----DPENPDVYYHRGQMRFLLQQYEEAIADFQKAISLDPE-NA 428 (606)
T ss_pred Ccccch--HHHHHHHHHhhhhccHHHHHHHHHHHhc----CCCCCchhHhHHHHHHHHHHHHHHHHHHHHHhhcChh-hh
Confidence 988876 5778999999999999999999999988 7888889999999999999999999999999988885 88
Q ss_pred hHHHHHHHHHHHcCCcHHHHHHHHHHHhccCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHhhcCC------CHHHHHH
Q 003563 279 DLITEVADTLMSLGHSNSALKYYHFLETNAGTDNGYLYLKLAECYLSLKERAHAIMFFYKALDRFED------NIDARLT 352 (810)
Q Consensus 279 ~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~------~~~~~~~ 352 (810)
-.+..++.+.+++++++++...|+.++.. .|..++++...|.++..++++++|++.|++++++.|. ++..+..
T Consensus 429 ~~~iQl~~a~Yr~~k~~~~m~~Fee~kkk-FP~~~Evy~~fAeiLtDqqqFd~A~k~YD~ai~LE~~~~~~~v~~~plV~ 507 (606)
T KOG0547|consen 429 YAYIQLCCALYRQHKIAESMKTFEEAKKK-FPNCPEVYNLFAEILTDQQQFDKAVKQYDKAIELEPREHLIIVNAAPLVH 507 (606)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHh-CCCCchHHHHHHHHHhhHHhHHHHHHHHHHHHhhccccccccccchhhhh
Confidence 88999999999999999999999999876 8999999999999999999999999999999999998 5555555
Q ss_pred HHHHHH-HcCCHHHHHHhcCCCCCCCcccCCCCCCChhhhHHHHHHHHHHHHHhcCCchhHHhhhhhhhhh
Q 003563 353 LASLLL-EEAKEEEAITLLSPPKDLDSLDMNSDKSNPWWLNEKIIMKLCHIYRAKGMPEDFVDAIFPLVCE 422 (810)
Q Consensus 353 la~~~~-~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~ 422 (810)
.|.+.. -.+++..|+++++++++++|.. ..++..+|.+..++|+.++|++.|++...-
T Consensus 508 Ka~l~~qwk~d~~~a~~Ll~KA~e~Dpkc------------e~A~~tlaq~~lQ~~~i~eAielFEksa~l 566 (606)
T KOG0547|consen 508 KALLVLQWKEDINQAENLLRKAIELDPKC------------EQAYETLAQFELQRGKIDEAIELFEKSAQL 566 (606)
T ss_pred hhHhhhchhhhHHHHHHHHHHHHccCchH------------HHHHHHHHHHHHHHhhHHHHHHHHHHHHHH
Confidence 444332 2488999999999999999975 358899999999999999999999877643
No 24
>KOG0495 consensus HAT repeat protein [RNA processing and modification]
Probab=99.94 E-value=2.5e-21 Score=196.47 Aligned_cols=609 Identities=14% Similarity=0.098 Sum_probs=441.7
Q ss_pred cCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCHHHHHHHHH
Q 003563 46 YGNFEQAISLLKEVVRLSPNLPETYNTLGLAHSALGNHKSAFDFYVIAAHLSPKDSALWKQLLTFAVQKGDTAQAMYYIR 125 (810)
Q Consensus 46 ~g~~~~A~~~~~~~l~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~ 125 (810)
.+|..+|..+++.+.+.+|.+|.+|..-+..-...|++..|.....+..+..|.+.++|..-+. +...+.|....-
T Consensus 264 l~DikKaR~llKSvretnP~hp~gWIAsArLEEvagKl~~Ar~~I~~GCe~cprSeDvWLeaiR----Lhp~d~aK~vvA 339 (913)
T KOG0495|consen 264 LEDIKKARLLLKSVRETNPKHPPGWIASARLEEVAGKLSVARNLIMKGCEECPRSEDVWLEAIR----LHPPDVAKTVVA 339 (913)
T ss_pred HHHHHHHHHHHHHHHhcCCCCCchHHHHHHHHHHhhHHHHHHHHHHHHHhhCCchHHHHHHHHh----cCChHHHHHHHH
Confidence 3578899999999999999999999999999999999999999999999999999999987554 456677888888
Q ss_pred HHHHcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHhhCCCCCCh
Q 003563 126 QAIRAEPKDISLRIHLASFYVEIGDYEKAAESYEQIQKLFPDNVDATKTGAQLFLKCGQTARSIGILEEYLKVHPSDADL 205 (810)
Q Consensus 126 ~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~ 205 (810)
.++...|..+..|+.-+.+-... ..=..+++++++..|++...|.. .....+.+.|.-.+.++.+..|.+.+
T Consensus 340 ~Avr~~P~Sv~lW~kA~dLE~~~---~~K~RVlRKALe~iP~sv~LWKa----AVelE~~~darilL~rAveccp~s~d- 411 (913)
T KOG0495|consen 340 NAVRFLPTSVRLWLKAADLESDT---KNKKRVLRKALEHIPRSVRLWKA----AVELEEPEDARILLERAVECCPQSMD- 411 (913)
T ss_pred HHHHhCCCChhhhhhHHhhhhHH---HHHHHHHHHHHHhCCchHHHHHH----HHhccChHHHHHHHHHHHHhccchHH-
Confidence 99999999988887776664433 33346778888888888777653 23456677788888888888887765
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHHhcCCCCCcHHHHHHHHHHHHhcCCHHHHHHHHHHhhcc----CCchhHhHH
Q 003563 206 SVIDLLVAILMENNAYEKTLQHIEHAQIVRFSGKELPLKLKVKAGICYLRLGNMEKAEILFADLQWK----NAIDHADLI 281 (810)
Q Consensus 206 ~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~----~~~~~~~~~ 281 (810)
.|..++. +.-|+.|...+.++.+. -|....+++..+.+-...|+.+...+++.+.+.. ...-+.+.|
T Consensus 412 -LwlAlar----LetYenAkkvLNkaRe~----iptd~~IWitaa~LEE~ngn~~mv~kii~rgl~~L~~ngv~i~rdqW 482 (913)
T KOG0495|consen 412 -LWLALAR----LETYENAKKVLNKAREI----IPTDREIWITAAKLEEANGNVDMVEKIIDRGLSELQANGVEINRDQW 482 (913)
T ss_pred -HHHHHHH----HHHHHHHHHHHHHHHhh----CCCChhHHHHHHHHHHhcCCHHHHHHHHHHHHHHHhhcceeecHHHH
Confidence 4544444 45678888888888887 5677788888888888888888888777775432 222355667
Q ss_pred HHHHHHHHHcCCcHHHHHHHHHHHhcc--CCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHhhcCCCHHHHHHHHHHHHH
Q 003563 282 TEVADTLMSLGHSNSALKYYHFLETNA--GTDNGYLYLKLAECYLSLKERAHAIMFFYKALDRFEDNIDARLTLASLLLE 359 (810)
Q Consensus 282 ~~la~~~~~~~~~~~A~~~~~~~~~~~--~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~ 359 (810)
+.-|..+...|-.-.+..+...++... ..+....|..-+..+.+.+-++-|+..|..+++.+|.....|...+.+-..
T Consensus 483 l~eAe~~e~agsv~TcQAIi~avigigvEeed~~~tw~~da~~~~k~~~~~carAVya~alqvfp~k~slWlra~~~ek~ 562 (913)
T KOG0495|consen 483 LKEAEACEDAGSVITCQAIIRAVIGIGVEEEDRKSTWLDDAQSCEKRPAIECARAVYAHALQVFPCKKSLWLRAAMFEKS 562 (913)
T ss_pred HHHHHHHhhcCChhhHHHHHHHHHhhccccchhHhHHhhhHHHHHhcchHHHHHHHHHHHHhhccchhHHHHHHHHHHHh
Confidence 777777777777777766666665542 344566778888888888888888888888888888888888888888888
Q ss_pred cCCHHHHHHhcCCCCCCCcccCCCCCCChhhhHHHHHHHHHHHHHhcCCchhHHhhhhhhhhhhHHHHHHHHHhhhhhcc
Q 003563 360 EAKEEEAITLLSPPKDLDSLDMNSDKSNPWWLNEKIIMKLCHIYRAKGMPEDFVDAIFPLVCESLCVEALRQKVKVKRRL 439 (810)
Q Consensus 360 ~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~~~~~~~~ 439 (810)
-|..++-..+++++....|... ..+...+..+...|+...|...+..+++..+..+...-
T Consensus 563 hgt~Esl~Allqkav~~~pkae------------~lwlM~ake~w~agdv~~ar~il~~af~~~pnseeiwl-------- 622 (913)
T KOG0495|consen 563 HGTRESLEALLQKAVEQCPKAE------------ILWLMYAKEKWKAGDVPAARVILDQAFEANPNSEEIWL-------- 622 (913)
T ss_pred cCcHHHHHHHHHHHHHhCCcch------------hHHHHHHHHHHhcCCcHHHHHHHHHHHHhCCCcHHHHH--------
Confidence 8888888888888888888653 35567777788888888888888887766444222100
Q ss_pred chhhHHHHHhHhcCCCCCccccCCCCCCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccccCCCCCCchhhhhccCC
Q 003563 440 TKGILQQRTKIYNNLPTDSILCGIRPAAPKSELLVAARARKKIQKKEALKEEKKALAKAAGVEWHSDDTDDESQQEAFRE 519 (810)
Q Consensus 440 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 519 (810)
...++... ...-.|++.++.+- + .
T Consensus 623 ------aavKle~e------------------n~e~eraR~llaka---------r-----------------------~ 646 (913)
T KOG0495|consen 623 ------AAVKLEFE------------------NDELERARDLLAKA---------R-----------------------S 646 (913)
T ss_pred ------HHHHHhhc------------------cccHHHHHHHHHHH---------h-----------------------c
Confidence 00000000 00012222222100 0 0
Q ss_pred CCCCCCCCchhhHHHHHHHHHHHHhhhcHHHHHHHHHHHHhhhhccCChhHHHHHHHhhhhhhccccCCchhHHHHHHHH
Q 003563 520 PPLPNLLKNEENQCLIIDLCKALASLQRYEEASEIINLSMRLAYNILPLEKKEELRSLGAKMAYDSTDPNHGFDCAKYIL 599 (810)
Q Consensus 520 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~eA~~~~~~al~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~a~~~~r~~~ 599 (810)
...-..+++..+...--+++.+||+.+++.+++.- +....+..+.+.+.-+.++.+.|-+.|-.-+
T Consensus 647 --------~sgTeRv~mKs~~~er~ld~~eeA~rllEe~lk~f------p~f~Kl~lmlGQi~e~~~~ie~aR~aY~~G~ 712 (913)
T KOG0495|consen 647 --------ISGTERVWMKSANLERYLDNVEEALRLLEEALKSF------PDFHKLWLMLGQIEEQMENIEMAREAYLQGT 712 (913)
T ss_pred --------cCCcchhhHHHhHHHHHhhhHHHHHHHHHHHHHhC------CchHHHHHHHhHHHHHHHHHHHHHHHHHhcc
Confidence 00011466667777778899999999999998632 3355666777788778888899999888888
Q ss_pred HhCCCChhHhHHHHHHHHhhcccccccchhhHHHHHHHHhcCCCCCchhhhcchhhhccchHHHHHHHHHHHhhCCCChH
Q 003563 600 QLHPYSLSAWNCYYKVLSRMGKINSKHSKHSKFIRYLRAKYKDCVPPIIISGHQFTMASHHQDAARCYLEAYKLLPENPL 679 (810)
Q Consensus 600 ~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~g~~~~~~~~~~~Ai~~y~~a~~~~p~~p~ 679 (810)
.+=|+++..|.++..+--+.++ .+++...+.|...++|++.-+.+-.=.+-+..|.-..|-....+|++..|++.+
T Consensus 713 k~cP~~ipLWllLakleEk~~~----~~rAR~ildrarlkNPk~~~lwle~Ir~ElR~gn~~~a~~lmakALQecp~sg~ 788 (913)
T KOG0495|consen 713 KKCPNSIPLWLLLAKLEEKDGQ----LVRARSILDRARLKNPKNALLWLESIRMELRAGNKEQAELLMAKALQECPSSGL 788 (913)
T ss_pred ccCCCCchHHHHHHHHHHHhcc----hhhHHHHHHHHHhcCCCcchhHHHHHHHHHHcCCHHHHHHHHHHHHHhCCccch
Confidence 8999999999999887666655 678899999999999998766665556667788999999999999999999775
Q ss_pred HHHHHHHHHHHHHhCccccchhHHHHHHHHHHHHhHhhcCCCchhhhhHHHHHHHhChhhHHHHHHHHHhccccccCCCC
Q 003563 680 INLCVGSALINLALGFRLQNKHQCLAQGFAFLYNNLRLCEHSQEALYNIARACHHVGLVSLAASYYEKVLAIKEKDYPIP 759 (810)
Q Consensus 680 ~~l~l~~~~~~~~~~r~~~~r~~~~~q~~~~l~~y~~~~~~~~e~~ynlgr~~~~lg~~~~Ai~~Y~~vL~~~~~~~~~~ 759 (810)
++-- ++ ....|++.=.+.+.-|++ +.+++-|..-+|+.|-.-..++.|.+.|+|++...|+++
T Consensus 789 LWaE-aI---------~le~~~~rkTks~DALkk----ce~dphVllaia~lfw~e~k~~kar~Wf~Ravk~d~d~G--- 851 (913)
T KOG0495|consen 789 LWAE-AI---------WLEPRPQRKTKSIDALKK----CEHDPHVLLAIAKLFWSEKKIEKAREWFERAVKKDPDNG--- 851 (913)
T ss_pred hHHH-HH---------HhccCcccchHHHHHHHh----ccCCchhHHHHHHHHHHHHHHHHHHHHHHHHHccCCccc---
Confidence 4432 11 122333333344444443 677899999999999999999999999999999987641
Q ss_pred CCCCCCCcccccCCCCcccccHHHHHHHHHHHHhcCCHHHHHHHHHhhc
Q 003563 760 KHNDKRPDLMESGESGYCDLQREAAYNLHLIYKNSGAVDLARQLLKDYC 808 (810)
Q Consensus 760 ~~~~~~~~~~~~~~~~~~~l~~eaa~nl~~iy~~~g~~~~A~~~~~~~~ 808 (810)
.+--++.--|..-|+-+.=.+++.++.
T Consensus 852 ----------------------D~wa~fykfel~hG~eed~kev~~~c~ 878 (913)
T KOG0495|consen 852 ----------------------DAWAWFYKFELRHGTEEDQKEVLKKCE 878 (913)
T ss_pred ----------------------hHHHHHHHHHHHhCCHHHHHHHHHHHh
Confidence 222344444556676666666666543
No 25
>KOG1126 consensus DNA-binding cell division cycle control protein [Cell cycle control, cell division, chromosome partitioning]
Probab=99.94 E-value=5.6e-25 Score=225.44 Aligned_cols=304 Identities=17% Similarity=0.131 Sum_probs=186.4
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHc
Q 003563 35 KMLGEASLQYAYGNFEQAISLLKEVVRLSPNLPETYNTLGLAHSALGNHKSAFDFYVIAAHLSPKDSALWKQLLTFAVQK 114 (810)
Q Consensus 35 ~~l~~a~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~p~~~~~~~~la~~~~~~ 114 (810)
..++++......-+..+|+..|.+.-...++...++..+|..|+++++|++|..+|+.+-.+.|-..+..-....+++.+
T Consensus 321 r~~~~~~~~~s~y~~~~A~~~~~klp~h~~nt~wvl~q~GrayFEl~~Y~~a~~~F~~~r~~~p~rv~~meiyST~LWHL 400 (638)
T KOG1126|consen 321 RGLGEGYRSLSQYNCREALNLFEKLPSHHYNTGWVLSQLGRAYFELIEYDQAERIFSLVRRIEPYRVKGMEIYSTTLWHL 400 (638)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhHHhcCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccccccchhHHHHHHHHH
Confidence 33455555555566666666666655556666666666666677666777777666666666665555544455555555
Q ss_pred CCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCChHHHHHHHHH
Q 003563 115 GDTAQAMYYIRQAIRAEPKDISLRIHLASFYVEIGDYEKAAESYEQIQKLFPDNVDATKTGAQLFLKCGQTARSIGILEE 194 (810)
Q Consensus 115 g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~ 194 (810)
.+--+--...+..+..+|+.|+.|..+|.||.-+++++.|+++|+++++++|...-++..+|.-+.....++.|..+|+.
T Consensus 401 q~~v~Ls~Laq~Li~~~~~sPesWca~GNcfSLQkdh~~Aik~f~RAiQldp~faYayTLlGhE~~~~ee~d~a~~~fr~ 480 (638)
T KOG1126|consen 401 QDEVALSYLAQDLIDTDPNSPESWCALGNCFSLQKDHDTAIKCFKRAIQLDPRFAYAYTLLGHESIATEEFDKAMKSFRK 480 (638)
T ss_pred HhhHHHHHHHHHHHhhCCCCcHHHHHhcchhhhhhHHHHHHHHHHHhhccCCccchhhhhcCChhhhhHHHHhHHHHHHh
Confidence 44444444445555666666666666666666666666666666666666666666666666666666666666666666
Q ss_pred HHhhCCCCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhcCCCCCcHHHHHHHHHHHHhcCCHHHHHHHHHHhhccCC
Q 003563 195 YLKVHPSDADLSVIDLLVAILMENNAYEKTLQHIEHAQIVRFSGKELPLKLKVKAGICYLRLGNMEKAEILFADLQWKNA 274 (810)
Q Consensus 195 ~l~~~p~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~ 274 (810)
++..+|.+.. +|+.+|.+|.++++++.|.-.|++|+++ +|.+..+...+|.++.+.|+.++|+.++++++..+|
T Consensus 481 Al~~~~rhYn--AwYGlG~vy~Kqek~e~Ae~~fqkA~~I----NP~nsvi~~~~g~~~~~~k~~d~AL~~~~~A~~ld~ 554 (638)
T KOG1126|consen 481 ALGVDPRHYN--AWYGLGTVYLKQEKLEFAEFHFQKAVEI----NPSNSVILCHIGRIQHQLKRKDKALQLYEKAIHLDP 554 (638)
T ss_pred hhcCCchhhH--HHHhhhhheeccchhhHHHHHHHhhhcC----CccchhHHhhhhHHHHHhhhhhHHHHHHHHHHhcCC
Confidence 6666666654 5666666666666666666666666666 555555555566666666666666666666555555
Q ss_pred chhHhHHHHHHHHHHHcCCcHHHHHHHHHHHhccCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHhhcCCC
Q 003563 275 IDHADLITEVADTLMSLGHSNSALKYYHFLETNAGTDNGYLYLKLAECYLSLKERAHAIMFFYKALDRFEDN 346 (810)
Q Consensus 275 ~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~ 346 (810)
. ++-..+..|.+++..+++++|+..++++... .|++..+++.+|.+|...|+.+.|+..|.-|..++|.-
T Consensus 555 k-n~l~~~~~~~il~~~~~~~eal~~LEeLk~~-vP~es~v~~llgki~k~~~~~~~Al~~f~~A~~ldpkg 624 (638)
T KOG1126|consen 555 K-NPLCKYHRASILFSLGRYVEALQELEELKEL-VPQESSVFALLGKIYKRLGNTDLALLHFSWALDLDPKG 624 (638)
T ss_pred C-CchhHHHHHHHHHhhcchHHHHHHHHHHHHh-CcchHHHHHHHHHHHHHHccchHHHHhhHHHhcCCCcc
Confidence 3 5555555566666666666666666555554 55555555666666666666666666666555555543
No 26
>PLN03077 Protein ECB2; Provisional
Probab=99.94 E-value=1.8e-21 Score=228.87 Aligned_cols=625 Identities=12% Similarity=0.082 Sum_probs=413.3
Q ss_pred CCChHHHHHHHHHHHHcCChHHHHHHHHHHHhcC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCC-CHHHHHHH
Q 003563 64 PNLPETYNTLGLAHSALGNHKSAFDFYVIAAHLS-PKDSALWKQLLTFAVQKGDTAQAMYYIRQAIRAEPK-DISLRIHL 141 (810)
Q Consensus 64 p~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~-p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~-~~~~~~~l 141 (810)
+..+..+..+...+...|++++|...|....... +.+...+..+...+...+..+.|...+..+++..+. +......+
T Consensus 48 ~~~~~~~n~~i~~l~~~g~~~~A~~l~~~m~~~g~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~n~l 127 (857)
T PLN03077 48 SSSTHDSNSQLRALCSHGQLEQALKLLESMQELRVPVDEDAYVALFRLCEWKRAVEEGSRVCSRALSSHPSLGVRLGNAM 127 (857)
T ss_pred ccchhhHHHHHHHHHhCCCHHHHHHHHHHHHhcCCCCChhHHHHHHHHHhhCCCHHHHHHHHHHHHHcCCCCCchHHHHH
Confidence 3456667788889999999999999999988753 445666777888888999999999999999987653 34456777
Q ss_pred HHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHhh--CCCCCChHHHHHHHHHHHHcC
Q 003563 142 ASFYVEIGDYEKAAESYEQIQKLFPDNVDATKTGAQLFLKCGQTARSIGILEEYLKV--HPSDADLSVIDLLVAILMENN 219 (810)
Q Consensus 142 a~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~--~p~~~~~~~~~~la~~~~~~g 219 (810)
...|.+.|+.+.|...|+++. +.+...|..+...|.+.|++++|+..|++.... .|+.. .+..+...+...+
T Consensus 128 i~~~~~~g~~~~A~~~f~~m~---~~d~~~~n~li~~~~~~g~~~~A~~~f~~M~~~g~~Pd~~---t~~~ll~~~~~~~ 201 (857)
T PLN03077 128 LSMFVRFGELVHAWYVFGKMP---ERDLFSWNVLVGGYAKAGYFDEALCLYHRMLWAGVRPDVY---TFPCVLRTCGGIP 201 (857)
T ss_pred HHHHHhCCChHHHHHHHhcCC---CCCeeEHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCChh---HHHHHHHHhCCcc
Confidence 888999999999999999874 346778999999999999999999999998764 34433 6777888888899
Q ss_pred CHHHHHHHHHHHHHHhcCCCCCcHHHHHHHHHHHHhcCCHHHHHHHHHHhhccCCchhHhHHHHHHHHHHHcCCcHHHHH
Q 003563 220 AYEKTLQHIEHAQIVRFSGKELPLKLKVKAGICYLRLGNMEKAEILFADLQWKNAIDHADLITEVADTLMSLGHSNSALK 299 (810)
Q Consensus 220 ~~~~A~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~ 299 (810)
++..+.+.+..++.. + ...+..++..+...|.+.|++++|...|+++.. .+...|..+...|.+.|++++|+.
T Consensus 202 ~~~~~~~~~~~~~~~-g--~~~~~~~~n~Li~~y~k~g~~~~A~~lf~~m~~----~d~~s~n~li~~~~~~g~~~eAl~ 274 (857)
T PLN03077 202 DLARGREVHAHVVRF-G--FELDVDVVNALITMYVKCGDVVSARLVFDRMPR----RDCISWNAMISGYFENGECLEGLE 274 (857)
T ss_pred chhhHHHHHHHHHHc-C--CCcccchHhHHHHHHhcCCCHHHHHHHHhcCCC----CCcchhHHHHHHHHhCCCHHHHHH
Confidence 999999998888765 2 234556777888999999999999999999743 256789999999999999999999
Q ss_pred HHHHHHhccCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHhhc-CCCHHHHHHHHHHHHHcCCHHHHHHhcCCCCCCCc
Q 003563 300 YYHFLETNAGTDNGYLYLKLAECYLSLKERAHAIMFFYKALDRF-EDNIDARLTLASLLLEEAKEEEAITLLSPPKDLDS 378 (810)
Q Consensus 300 ~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~ 378 (810)
+|.++.......+..++..+...+...|+.+.|.+.+..+.+.. +.+..++..|...|.+.|++++|.++|++....+.
T Consensus 275 lf~~M~~~g~~Pd~~ty~~ll~a~~~~g~~~~a~~l~~~~~~~g~~~d~~~~n~Li~~y~k~g~~~~A~~vf~~m~~~d~ 354 (857)
T PLN03077 275 LFFTMRELSVDPDLMTITSVISACELLGDERLGREMHGYVVKTGFAVDVSVCNSLIQMYLSLGSWGEAEKVFSRMETKDA 354 (857)
T ss_pred HHHHHHHcCCCCChhHHHHHHHHHHhcCChHHHHHHHHHHHHhCCccchHHHHHHHHHHHhcCCHHHHHHHHhhCCCCCe
Confidence 99999877666677888888889999999999999999988763 45678899999999999999999999998764332
Q ss_pred ccCCCCCCChhhhHHHHHHHHHHHHHhcCCchhHHhhhhhhhhhhHHHHHHHHH--hhhhhccchhhHHHHHhHhcCCCC
Q 003563 379 LDMNSDKSNPWWLNEKIIMKLCHIYRAKGMPEDFVDAIFPLVCESLCVEALRQK--VKVKRRLTKGILQQRTKIYNNLPT 456 (810)
Q Consensus 379 ~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~ 456 (810)
..+..+...|.+.|++++|++.|..+.+.+..++...-. ....... .......++.+..
T Consensus 355 ---------------~s~n~li~~~~~~g~~~~A~~lf~~M~~~g~~Pd~~t~~~ll~a~~~~--g~~~~a~~l~~~~-- 415 (857)
T PLN03077 355 ---------------VSWTAMISGYEKNGLPDKALETYALMEQDNVSPDEITIASVLSACACL--GDLDVGVKLHELA-- 415 (857)
T ss_pred ---------------eeHHHHHHHHHhCCCHHHHHHHHHHHHHhCCCCCceeHHHHHHHHhcc--chHHHHHHHHHHH--
Confidence 256888999999999999999999998765433211000 0000000 0000000000000
Q ss_pred CccccCCCCCCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccccCCCCCCchhhhhccCCCCCCCCCCchhhHHHHH
Q 003563 457 DSILCGIRPAAPKSELLVAARARKKIQKKEALKEEKKALAKAAGVEWHSDDTDDESQQEAFREPPLPNLLKNEENQCLII 536 (810)
Q Consensus 457 ~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 536 (810)
.-.|..... ....-+..+..+.+. .+ . +. ..+.. +..+ +...+-
T Consensus 416 --~~~g~~~~~-----~~~n~Li~~y~k~g~-~~--~------A~-------------~vf~~------m~~~-d~vs~~ 459 (857)
T PLN03077 416 --ERKGLISYV-----VVANALIEMYSKCKC-ID--K------AL-------------EVFHN------IPEK-DVISWT 459 (857)
T ss_pred --HHhCCCcch-----HHHHHHHHHHHHcCC-HH--H------HH-------------HHHHh------CCCC-CeeeHH
Confidence 000000000 000000000000000 00 0 00 00000 0000 011222
Q ss_pred HHHHHHHhhhcHHHHHHHHHHHHhhhhccCChhHHHHHHHhhhhhhccccCCchhHHHHHHHHHh-CCCChhHhHHHHHH
Q 003563 537 DLCKALASLQRYEEASEIINLSMRLAYNILPLEKKEELRSLGAKMAYDSTDPNHGFDCAKYILQL-HPYSLSAWNCYYKV 615 (810)
Q Consensus 537 ~~~~~~~~~~~~~eA~~~~~~al~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~a~~~~r~~~~~-~p~~~~~~~~~~~~ 615 (810)
.+...+...|+.+||+.+++.++. . ..|+ ...+..+. ..+...|+.+.+.+....++.. ...+....+.+..+
T Consensus 460 ~mi~~~~~~g~~~eA~~lf~~m~~-~---~~pd-~~t~~~lL-~a~~~~g~l~~~~~i~~~~~~~g~~~~~~~~naLi~~ 533 (857)
T PLN03077 460 SIIAGLRLNNRCFEALIFFRQMLL-T---LKPN-SVTLIAAL-SACARIGALMCGKEIHAHVLRTGIGFDGFLPNALLDL 533 (857)
T ss_pred HHHHHHHHCCCHHHHHHHHHHHHh-C---CCCC-HhHHHHHH-HHHhhhchHHHhHHHHHHHHHhCCCccceechHHHHH
Confidence 234456667777777777776653 1 2222 22222222 2233556677777666666654 23334455555566
Q ss_pred HHhhcccccccchhhHHHHHHHHhcCCCCCchhhhcchhhhccchHHHHHHHHHHHh--hCCCChHHHHHHHHHHHHHHh
Q 003563 616 LSRMGKINSKHSKHSKFIRYLRAKYKDCVPPIIISGHQFTMASHHQDAARCYLEAYK--LLPENPLINLCVGSALINLAL 693 (810)
Q Consensus 616 ~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~g~~~~~~~~~~~Ai~~y~~a~~--~~p~~p~~~l~l~~~~~~~~~ 693 (810)
+.+.|. ...+.+.+.+. +.+...+-.....+...|..++|+..|.+..+ ..|+..... .+-.++.+
T Consensus 534 y~k~G~----~~~A~~~f~~~----~~d~~s~n~lI~~~~~~G~~~~A~~lf~~M~~~g~~Pd~~T~~-~ll~a~~~--- 601 (857)
T PLN03077 534 YVRCGR----MNYAWNQFNSH----EKDVVSWNILLTGYVAHGKGSMAVELFNRMVESGVNPDEVTFI-SLLCACSR--- 601 (857)
T ss_pred HHHcCC----HHHHHHHHHhc----CCChhhHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCcccHH-HHHHHHhh---
Confidence 666666 33445554443 33333444445557788999999999998876 457653322 22223332
Q ss_pred CccccchhHHHHHHHHHHHHhHhhcC--CCchhhhhHHHHHHHhChhhHHHHHHHHHhccccccCCCCCCCCCCCccccc
Q 003563 694 GFRLQNKHQCLAQGFAFLYNNLRLCE--HSQEALYNIARACHHVGLVSLAASYYEKVLAIKEKDYPIPKHNDKRPDLMES 771 (810)
Q Consensus 694 ~r~~~~r~~~~~q~~~~l~~y~~~~~--~~~e~~ynlgr~~~~lg~~~~Ai~~Y~~vL~~~~~~~~~~~~~~~~~~~~~~ 771 (810)
...+.+|..++.+-.+..+ .+.+.|..+..+|...|++++|.+.+++. .+.|+
T Consensus 602 -------~g~v~ea~~~f~~M~~~~gi~P~~~~y~~lv~~l~r~G~~~eA~~~~~~m-~~~pd----------------- 656 (857)
T PLN03077 602 -------SGMVTQGLEYFHSMEEKYSITPNLKHYACVVDLLGRAGKLTEAYNFINKM-PITPD----------------- 656 (857)
T ss_pred -------cChHHHHHHHHHHHHHHhCCCCchHHHHHHHHHHHhCCCHHHHHHHHHHC-CCCCC-----------------
Confidence 2357788888876653222 24678899999999999999999998875 23222
Q ss_pred CCCCcccccHHHHHHHHHHHHhcCCHHHHHHHHHhhc
Q 003563 772 GESGYCDLQREAAYNLHLIYKNSGAVDLARQLLKDYC 808 (810)
Q Consensus 772 ~~~~~~~l~~eaa~nl~~iy~~~g~~~~A~~~~~~~~ 808 (810)
...+.+.. ..|+..||.++|....++-+
T Consensus 657 ------~~~~~aLl---~ac~~~~~~e~~e~~a~~l~ 684 (857)
T PLN03077 657 ------PAVWGALL---NACRIHRHVELGELAAQHIF 684 (857)
T ss_pred ------HHHHHHHH---HHHHHcCChHHHHHHHHHHH
Confidence 01244444 45677899999887776543
No 27
>PRK11788 tetratricopeptide repeat protein; Provisional
Probab=99.93 E-value=2.6e-23 Score=223.26 Aligned_cols=280 Identities=16% Similarity=0.128 Sum_probs=190.8
Q ss_pred CCCHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCCC----HHH
Q 003563 28 KLSPGVTKMLGEASLQYAYGNFEQAISLLKEVVRLSPNLPETYNTLGLAHSALGNHKSAFDFYVIAAHLSPKD----SAL 103 (810)
Q Consensus 28 ~~~~~~~~~l~~a~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~p~~----~~~ 103 (810)
+..+.....+..|..+...|++++|+..|+++++.+|+++.++..+|.++...|++++|+..+++++...+.. ...
T Consensus 30 ~~~~~~~~~y~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~~ 109 (389)
T PRK11788 30 KESNRLSRDYFKGLNFLLNEQPDKAIDLFIEMLKVDPETVELHLALGNLFRRRGEVDRAIRIHQNLLSRPDLTREQRLLA 109 (389)
T ss_pred hhhhhccHHHHHHHHHHhcCChHHHHHHHHHHHhcCcccHHHHHHHHHHHHHcCcHHHHHHHHHHHhcCCCCCHHHHHHH
Confidence 4455666777788888999999999999999999999999999999999999999999999999888754332 245
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHH-----HHHHHHHH
Q 003563 104 WKQLLTFAVQKGDTAQAMYYIRQAIRAEPKDISLRIHLASFYVEIGDYEKAAESYEQIQKLFPDNVD-----ATKTGAQL 178 (810)
Q Consensus 104 ~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~-----~~~~la~~ 178 (810)
+..+|.++...|++++|+..|+++++.+|.+..++..++.++...|++++|++.++++++..|.+.. .+..+|.+
T Consensus 110 ~~~La~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~la~~ 189 (389)
T PRK11788 110 LQELGQDYLKAGLLDRAEELFLQLVDEGDFAEGALQQLLEIYQQEKDWQKAIDVAERLEKLGGDSLRVEIAHFYCELAQQ 189 (389)
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHcCCcchHHHHHHHHHHHHHhchHHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHH
Confidence 7777888888888888888888888877777778888888888888888888888888777665422 34456666
Q ss_pred HHHcCChHHHHHHHHHHHhhCCCCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhcCCCCCcHHHHHHHHHHHHhcCC
Q 003563 179 FLKCGQTARSIGILEEYLKVHPSDADLSVIDLLVAILMENNAYEKTLQHIEHAQIVRFSGKELPLKLKVKAGICYLRLGN 258 (810)
Q Consensus 179 ~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~ 258 (810)
+...|++++|+..++++++..|+... ++..+|.++...|++++|+..++++...
T Consensus 190 ~~~~~~~~~A~~~~~~al~~~p~~~~--~~~~la~~~~~~g~~~~A~~~~~~~~~~------------------------ 243 (389)
T PRK11788 190 ALARGDLDAARALLKKALAADPQCVR--ASILLGDLALAQGDYAAAIEALERVEEQ------------------------ 243 (389)
T ss_pred HHhCCCHHHHHHHHHHHHhHCcCCHH--HHHHHHHHHHHCCCHHHHHHHHHHHHHH------------------------
Confidence 66667777777777776666665443 5556666666666666666666666554
Q ss_pred HHHHHHHHHHhhccCCchhHhHHHHHHHHHHHcCCcHHHHHHHHHHHhccCCCCHHHHHHHHHHHHHccCHHHHHHHHHH
Q 003563 259 MEKAEILFADLQWKNAIDHADLITEVADTLMSLGHSNSALKYYHFLETNAGTDNGYLYLKLAECYLSLKERAHAIMFFYK 338 (810)
Q Consensus 259 ~~~A~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~ 338 (810)
.|.....++..++.++...|++++|+..++++... .|+.. .+..++.++...|++++|+..+++
T Consensus 244 --------------~p~~~~~~~~~l~~~~~~~g~~~~A~~~l~~~~~~-~p~~~-~~~~la~~~~~~g~~~~A~~~l~~ 307 (389)
T PRK11788 244 --------------DPEYLSEVLPKLMECYQALGDEAEGLEFLRRALEE-YPGAD-LLLALAQLLEEQEGPEAAQALLRE 307 (389)
T ss_pred --------------ChhhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh-CCCch-HHHHHHHHHHHhCCHHHHHHHHHH
Confidence 22212233344455555555555555555555443 33332 224555555555555555555555
Q ss_pred HHhhcCCCHHH
Q 003563 339 ALDRFEDNIDA 349 (810)
Q Consensus 339 al~~~p~~~~~ 349 (810)
+++..|++...
T Consensus 308 ~l~~~P~~~~~ 318 (389)
T PRK11788 308 QLRRHPSLRGF 318 (389)
T ss_pred HHHhCcCHHHH
Confidence 55555554433
No 28
>PRK11788 tetratricopeptide repeat protein; Provisional
Probab=99.93 E-value=4.1e-23 Score=221.81 Aligned_cols=277 Identities=17% Similarity=0.176 Sum_probs=207.0
Q ss_pred hHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCC----HHHHHHHH
Q 003563 67 PETYNTLGLAHSALGNHKSAFDFYVIAAHLSPKDSALWKQLLTFAVQKGDTAQAMYYIRQAIRAEPKD----ISLRIHLA 142 (810)
Q Consensus 67 ~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~----~~~~~~la 142 (810)
....+.+|..+...|++++|+..|.+++..+|++..++..+|.++...|++++|+..+++++...+.. ..++..+|
T Consensus 35 ~~~~y~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~~~~~La 114 (389)
T PRK11788 35 LSRDYFKGLNFLLNEQPDKAIDLFIEMLKVDPETVELHLALGNLFRRRGEVDRAIRIHQNLLSRPDLTREQRLLALQELG 114 (389)
T ss_pred ccHHHHHHHHHHhcCChHHHHHHHHHHHhcCcccHHHHHHHHHHHHHcCcHHHHHHHHHHHhcCCCCCHHHHHHHHHHHH
Confidence 34556667777778888888888888888888887788888888888888888888888777643222 23456667
Q ss_pred HHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHhhCCCCCChHHHHHHHHHHHHcCCHH
Q 003563 143 SFYVEIGDYEKAAESYEQIQKLFPDNVDATKTGAQLFLKCGQTARSIGILEEYLKVHPSDADLSVIDLLVAILMENNAYE 222 (810)
Q Consensus 143 ~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~~~la~~~~~~g~~~ 222 (810)
.+|...|++++|+..|+++++..|.+..++..++.++...|++++|++.++++++..|.+....
T Consensus 115 ~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~---------------- 178 (389)
T PRK11788 115 QDYLKAGLLDRAEELFLQLVDEGDFAEGALQQLLEIYQQEKDWQKAIDVAERLEKLGGDSLRVE---------------- 178 (389)
T ss_pred HHHHHCCCHHHHHHHHHHHHcCCcchHHHHHHHHHHHHHhchHHHHHHHHHHHHHhcCCcchHH----------------
Confidence 7777777777777777777776666666667777777777777777777776666555432210
Q ss_pred HHHHHHHHHHHHhcCCCCCcHHHHHHHHHHHHhcCCHHHHHHHHHHhhccCCchhHhHHHHHHHHHHHcCCcHHHHHHHH
Q 003563 223 KTLQHIEHAQIVRFSGKELPLKLKVKAGICYLRLGNMEKAEILFADLQWKNAIDHADLITEVADTLMSLGHSNSALKYYH 302 (810)
Q Consensus 223 ~A~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~ 302 (810)
....+..+|.++...|++++|+..+++++...|. ....+..+|.++...|++++|+..++
T Consensus 179 -------------------~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~-~~~~~~~la~~~~~~g~~~~A~~~~~ 238 (389)
T PRK11788 179 -------------------IAHFYCELAQQALARGDLDAARALLKKALAADPQ-CVRASILLGDLALAQGDYAAAIEALE 238 (389)
T ss_pred -------------------HHHHHHHHHHHHHhCCCHHHHHHHHHHHHhHCcC-CHHHHHHHHHHHHHCCCHHHHHHHHH
Confidence 0112334555566666666666666666655553 56678889999999999999999999
Q ss_pred HHHhccCCC-CHHHHHHHHHHHHHccCHHHHHHHHHHHHhhcCCCHHHHHHHHHHHHHcCCHHHHHHhcCCCCCCCcccC
Q 003563 303 FLETNAGTD-NGYLYLKLAECYLSLKERAHAIMFFYKALDRFEDNIDARLTLASLLLEEAKEEEAITLLSPPKDLDSLDM 381 (810)
Q Consensus 303 ~~~~~~~~~-~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~ 381 (810)
++... .|. ...++..++.+|...|++++|+..++++++..|+...+ ..++.++.+.|++++|+..++++++..|++.
T Consensus 239 ~~~~~-~p~~~~~~~~~l~~~~~~~g~~~~A~~~l~~~~~~~p~~~~~-~~la~~~~~~g~~~~A~~~l~~~l~~~P~~~ 316 (389)
T PRK11788 239 RVEEQ-DPEYLSEVLPKLMECYQALGDEAEGLEFLRRALEEYPGADLL-LALAQLLEEQEGPEAAQALLREQLRRHPSLR 316 (389)
T ss_pred HHHHH-ChhhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCchHH-HHHHHHHHHhCCHHHHHHHHHHHHHhCcCHH
Confidence 99876 444 35678899999999999999999999999999987544 8899999999999999999999999988764
No 29
>KOG1126 consensus DNA-binding cell division cycle control protein [Cell cycle control, cell division, chromosome partitioning]
Probab=99.93 E-value=7.5e-24 Score=217.21 Aligned_cols=306 Identities=15% Similarity=0.087 Sum_probs=277.8
Q ss_pred HHHHHHHHHHHH--cCChHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHH
Q 003563 68 ETYNTLGLAHSA--LGNHKSAFDFYVIAAHLSPKDSALWKQLLTFAVQKGDTAQAMYYIRQAIRAEPKDISLRIHLASFY 145 (810)
Q Consensus 68 ~~~~~l~~~~~~--~g~~~~A~~~~~~a~~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~ 145 (810)
..+..+|..|.. +-+..+|+..|.+.-...++...+...+|..|+++++|++|..+|+.+-+..|-.....-....++
T Consensus 318 ~llr~~~~~~~~~s~y~~~~A~~~~~klp~h~~nt~wvl~q~GrayFEl~~Y~~a~~~F~~~r~~~p~rv~~meiyST~L 397 (638)
T KOG1126|consen 318 ELLRGLGEGYRSLSQYNCREALNLFEKLPSHHYNTGWVLSQLGRAYFELIEYDQAERIFSLVRRIEPYRVKGMEIYSTTL 397 (638)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhhHHhcCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccccccchhHHHHHH
Confidence 345556665554 456779999999977778888889999999999999999999999999999997776666666667
Q ss_pred HHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHhhCCCCCChHHHHHHHHHHHHcCCHHHHH
Q 003563 146 VEIGDYEKAAESYEQIQKLFPDNVDATKTGAQLFLKCGQTARSIGILEEYLKVHPSDADLSVIDLLVAILMENNAYEKTL 225 (810)
Q Consensus 146 ~~~g~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~~~la~~~~~~g~~~~A~ 225 (810)
..+.+.-+---.-+..+..+|+.|+.|..+|.+|.-+++.+.|+++|+++++++|...- ++..+|.-+....++++|.
T Consensus 398 WHLq~~v~Ls~Laq~Li~~~~~sPesWca~GNcfSLQkdh~~Aik~f~RAiQldp~faY--ayTLlGhE~~~~ee~d~a~ 475 (638)
T KOG1126|consen 398 WHLQDEVALSYLAQDLIDTDPNSPESWCALGNCFSLQKDHDTAIKCFKRAIQLDPRFAY--AYTLLGHESIATEEFDKAM 475 (638)
T ss_pred HHHHhhHHHHHHHHHHHhhCCCCcHHHHHhcchhhhhhHHHHHHHHHHHhhccCCccch--hhhhcCChhhhhHHHHhHH
Confidence 66666555445556788899999999999999999999999999999999999998765 7889999999999999999
Q ss_pred HHHHHHHHHhcCCCCCcHHHHHHHHHHHHhcCCHHHHHHHHHHhhccCCchhHhHHHHHHHHHHHcCCcHHHHHHHHHHH
Q 003563 226 QHIEHAQIVRFSGKELPLKLKVKAGICYLRLGNMEKAEILFADLQWKNAIDHADLITEVADTLMSLGHSNSALKYYHFLE 305 (810)
Q Consensus 226 ~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~ 305 (810)
.+|+.++.. ++....+|+.+|.+|.++++++.|.-+|++++..+|. +..+...+|.++.+.|+.++|+.+|++++
T Consensus 476 ~~fr~Al~~----~~rhYnAwYGlG~vy~Kqek~e~Ae~~fqkA~~INP~-nsvi~~~~g~~~~~~k~~d~AL~~~~~A~ 550 (638)
T KOG1126|consen 476 KSFRKALGV----DPRHYNAWYGLGTVYLKQEKLEFAEFHFQKAVEINPS-NSVILCHIGRIQHQLKRKDKALQLYEKAI 550 (638)
T ss_pred HHHHhhhcC----CchhhHHHHhhhhheeccchhhHHHHHHHhhhcCCcc-chhHHhhhhHHHHHhhhhhHHHHHHHHHH
Confidence 999999998 7889999999999999999999999999999999996 88899999999999999999999999999
Q ss_pred hccCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHhhcCCCHHHHHHHHHHHHHcCCHHHHHHhcCCCCCCCcccC
Q 003563 306 TNAGTDNGYLYLKLAECYLSLKERAHAIMFFYKALDRFEDNIDARLTLASLLLEEAKEEEAITLLSPPKDLDSLDM 381 (810)
Q Consensus 306 ~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~ 381 (810)
.. +|.++-..+..|.++..++++++|...+++..+..|++..++..+|.+|.+.|+.+.|+..|.-|.+++|...
T Consensus 551 ~l-d~kn~l~~~~~~~il~~~~~~~eal~~LEeLk~~vP~es~v~~llgki~k~~~~~~~Al~~f~~A~~ldpkg~ 625 (638)
T KOG1126|consen 551 HL-DPKNPLCKYHRASILFSLGRYVEALQELEELKELVPQESSVFALLGKIYKRLGNTDLALLHFSWALDLDPKGA 625 (638)
T ss_pred hc-CCCCchhHHHHHHHHHhhcchHHHHHHHHHHHHhCcchHHHHHHHHHHHHHHccchHHHHhhHHHhcCCCccc
Confidence 87 9999999999999999999999999999999999999999999999999999999999999999999999753
No 30
>KOG1155 consensus Anaphase-promoting complex (APC), Cdc23 subunit [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=99.92 E-value=1.1e-21 Score=191.68 Aligned_cols=379 Identities=14% Similarity=0.076 Sum_probs=289.3
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCC--CHHHHHHHHHH
Q 003563 33 VTKMLGEASLQYAYGNFEQAISLLKEVVRLSPNLPETYNTLGLAHSALGNHKSAFDFYVIAAHLSPK--DSALWKQLLTF 110 (810)
Q Consensus 33 ~~~~l~~a~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~p~--~~~~~~~la~~ 110 (810)
.-.++-.|.++...|..+.|+..|.+++...|-+..+|..|+.+... ++........-|. +.-.-..++.+
T Consensus 164 ~fllYL~Gvv~k~~~~~s~A~~sfv~~v~~~P~~W~AWleL~~lit~-------~e~~~~l~~~l~~~~h~M~~~F~~~a 236 (559)
T KOG1155|consen 164 EFLLYLYGVVLKELGLLSLAIDSFVEVVNRYPWFWSAWLELSELITD-------IEILSILVVGLPSDMHWMKKFFLKKA 236 (559)
T ss_pred hHHHHHHHHHHHhhchHHHHHHHHHHHHhcCCcchHHHHHHHHhhch-------HHHHHHHHhcCcccchHHHHHHHHHH
Confidence 33445556666666666666666666666666666666666655321 1222222222232 22223345566
Q ss_pred HHHcCCHHHHHHHHHHHHHc-CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCChHHHH
Q 003563 111 AVQKGDTAQAMYYIRQAIRA-EPKDISLRIHLASFYVEIGDYEKAAESYEQIQKLFPDNVDATKTGAQLFLKCGQTARSI 189 (810)
Q Consensus 111 ~~~~g~~~~A~~~~~~al~~-~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~ 189 (810)
+....+.++++.-++..... .|...-.-...|.+...+.++++|+..|+.+.+.+|-..+-.-....+++-..+-.+-.
T Consensus 237 ~~el~q~~e~~~k~e~l~~~gf~~~~~i~~~~A~~~y~~rDfD~a~s~Feei~knDPYRl~dmdlySN~LYv~~~~skLs 316 (559)
T KOG1155|consen 237 YQELHQHEEALQKKERLSSVGFPNSMYIKTQIAAASYNQRDFDQAESVFEEIRKNDPYRLDDMDLYSNVLYVKNDKSKLS 316 (559)
T ss_pred HHHHHHHHHHHHHHHHHHhccCCccHHHHHHHHHHHhhhhhHHHHHHHHHHHHhcCCCcchhHHHHhHHHHHHhhhHHHH
Confidence 66666777777777777776 67777777778888888888888888888888888876665556666665555544444
Q ss_pred HHHHHHHhhCCCCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhcCCCCCcHHHHHHHHHHHHhcCCHHHHHHHHHHh
Q 003563 190 GILEEYLKVHPSDADLSVIDLLVAILMENNAYEKTLQHIEHAQIVRFSGKELPLKLKVKAGICYLRLGNMEKAEILFADL 269 (810)
Q Consensus 190 ~~~~~~l~~~p~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~ 269 (810)
-+.+.+..++.-.++ ....+|+.|...++.++|+.+|++++++ +|....+|..+|.-|..+++...|+..|+.+
T Consensus 317 ~LA~~v~~idKyR~E--TCCiIaNYYSlr~eHEKAv~YFkRALkL----Np~~~~aWTLmGHEyvEmKNt~AAi~sYRrA 390 (559)
T KOG1155|consen 317 YLAQNVSNIDKYRPE--TCCIIANYYSLRSEHEKAVMYFKRALKL----NPKYLSAWTLMGHEYVEMKNTHAAIESYRRA 390 (559)
T ss_pred HHHHHHHHhccCCcc--ceeeehhHHHHHHhHHHHHHHHHHHHhc----CcchhHHHHHhhHHHHHhcccHHHHHHHHHH
Confidence 444555555554444 5668899999999999999999999999 8889999999999999999999999999999
Q ss_pred hccCCchhHhHHHHHHHHHHHcCCcHHHHHHHHHHHhccCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHhhcCCCHHH
Q 003563 270 QWKNAIDHADLITEVADTLMSLGHSNSALKYYHFLETNAGTDNGYLYLKLAECYLSLKERAHAIMFFYKALDRFEDNIDA 349 (810)
Q Consensus 270 ~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~ 349 (810)
++.+|. +..+|+.+|++|.-.+.+.=|+-+|+++... .|.++..|..+|.||.++++.++|+++|.+++.....+..+
T Consensus 391 vdi~p~-DyRAWYGLGQaYeim~Mh~YaLyYfqkA~~~-kPnDsRlw~aLG~CY~kl~~~~eAiKCykrai~~~dte~~~ 468 (559)
T KOG1155|consen 391 VDINPR-DYRAWYGLGQAYEIMKMHFYALYYFQKALEL-KPNDSRLWVALGECYEKLNRLEEAIKCYKRAILLGDTEGSA 468 (559)
T ss_pred HhcCch-hHHHHhhhhHHHHHhcchHHHHHHHHHHHhc-CCCchHHHHHHHHHHHHhccHHHHHHHHHHHHhccccchHH
Confidence 999996 8999999999999999999999999999987 89999999999999999999999999999999998888999
Q ss_pred HHHHHHHHHHcCCHHHHHHhcCCCCCCCcccCCCCCCChhhhHHHHHHHHHHHHHhcCCchhHHhhhhhhhhhhHHHHHH
Q 003563 350 RLTLASLLLEEAKEEEAITLLSPPKDLDSLDMNSDKSNPWWLNEKIIMKLCHIYRAKGMPEDFVDAIFPLVCESLCVEAL 429 (810)
Q Consensus 350 ~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~~~~~~~ 429 (810)
+..||.+|.++++.++|..+|++.++....... ..+ .-.++...|+.-+.+.+++++|.......+.-+...+..
T Consensus 469 l~~LakLye~l~d~~eAa~~yek~v~~~~~eg~-~~~----~t~ka~~fLA~~f~k~~~~~~As~Ya~~~~~~~~e~eea 543 (559)
T KOG1155|consen 469 LVRLAKLYEELKDLNEAAQYYEKYVEVSELEGE-IDD----ETIKARLFLAEYFKKMKDFDEASYYATLVLKGETECEEA 543 (559)
T ss_pred HHHHHHHHHHHHhHHHHHHHHHHHHHHHHhhcc-cch----HHHHHHHHHHHHHHhhcchHHHHHHHHHHhcCCchHHHH
Confidence 999999999999999999999988764311110 000 013566779999999999999999888877665554444
Q ss_pred HH
Q 003563 430 RQ 431 (810)
Q Consensus 430 ~~ 431 (810)
+.
T Consensus 544 k~ 545 (559)
T KOG1155|consen 544 KA 545 (559)
T ss_pred HH
Confidence 33
No 31
>KOG0495 consensus HAT repeat protein [RNA processing and modification]
Probab=99.92 E-value=5.7e-19 Score=179.56 Aligned_cols=598 Identities=13% Similarity=0.049 Sum_probs=442.1
Q ss_pred CCHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCCCHHHHHHHH
Q 003563 29 LSPGVTKMLGEASLQYAYGNFEQAISLLKEVVRLSPNLPETYNTLGLAHSALGNHKSAFDFYVIAAHLSPKDSALWKQLL 108 (810)
Q Consensus 29 ~~~~~~~~l~~a~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~p~~~~~~~~la 108 (810)
.|.....++..|..--..|++..|..+..+.-+..|.+.+.|..-.. +...+.|....-.++...|.++..|..-+
T Consensus 281 nP~hp~gWIAsArLEEvagKl~~Ar~~I~~GCe~cprSeDvWLeaiR----Lhp~d~aK~vvA~Avr~~P~Sv~lW~kA~ 356 (913)
T KOG0495|consen 281 NPKHPPGWIASARLEEVAGKLSVARNLIMKGCEECPRSEDVWLEAIR----LHPPDVAKTVVANAVRFLPTSVRLWLKAA 356 (913)
T ss_pred CCCCCchHHHHHHHHHHhhHHHHHHHHHHHHHhhCCchHHHHHHHHh----cCChHHHHHHHHHHHHhCCCChhhhhhHH
Confidence 34455577888888889999999999999999999999999977554 46777899999999999999999999877
Q ss_pred HHHHHcCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCChHHH
Q 003563 109 TFAVQKGDTAQAMYYIRQAIRAEPKDISLRIHLASFYVEIGDYEKAAESYEQIQKLFPDNVDATKTGAQLFLKCGQTARS 188 (810)
Q Consensus 109 ~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A 188 (810)
.+-.. ...-...++++++..|++...|- ......+.+.|.-.+.++.+..|.+.+.|..++. +.-|+.|
T Consensus 357 dLE~~---~~~K~RVlRKALe~iP~sv~LWK----aAVelE~~~darilL~rAveccp~s~dLwlAlar----LetYenA 425 (913)
T KOG0495|consen 357 DLESD---TKNKKRVLRKALEHIPRSVRLWK----AAVELEEPEDARILLERAVECCPQSMDLWLALAR----LETYENA 425 (913)
T ss_pred hhhhH---HHHHHHHHHHHHHhCCchHHHHH----HHHhccChHHHHHHHHHHHHhccchHHHHHHHHH----HHHHHHH
Confidence 76543 33445688999999998877654 3345667777999999999999999998887775 4568889
Q ss_pred HHHHHHHHhhCCCCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhcC-CCCCcHHHHHHHHHHHHhcCCHHHHHHHHH
Q 003563 189 IGILEEYLKVHPSDADLSVIDLLVAILMENNAYEKTLQHIEHAQIVRFS-GKELPLKLKVKAGICYLRLGNMEKAEILFA 267 (810)
Q Consensus 189 ~~~~~~~l~~~p~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~-~~~~~~~~~~~la~~~~~~g~~~~A~~~~~ 267 (810)
...+.++-+.-|.++. +|..-+.+-...|+.+...+.+.+.+..... +...+.+.++.-+......|..-.+..+..
T Consensus 426 kkvLNkaRe~iptd~~--IWitaa~LEE~ngn~~mv~kii~rgl~~L~~ngv~i~rdqWl~eAe~~e~agsv~TcQAIi~ 503 (913)
T KOG0495|consen 426 KKVLNKAREIIPTDRE--IWITAAKLEEANGNVDMVEKIIDRGLSELQANGVEINRDQWLKEAEACEDAGSVITCQAIIR 503 (913)
T ss_pred HHHHHHHHhhCCCChh--HHHHHHHHHHhcCCHHHHHHHHHHHHHHHhhcceeecHHHHHHHHHHHhhcCChhhHHHHHH
Confidence 9999999999998876 8888899999999999988888887765432 235566777777877777788777777777
Q ss_pred HhhccC--CchhHhHHHHHHHHHHHcCCcHHHHHHHHHHHhccCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHhhcCC
Q 003563 268 DLQWKN--AIDHADLITEVADTLMSLGHSNSALKYYHFLETNAGTDNGYLYLKLAECYLSLKERAHAIMFFYKALDRFED 345 (810)
Q Consensus 268 ~~~~~~--~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~ 345 (810)
.++... ..+....|..-+..+.+.+.++-|..+|..+++. .|....+|...+..-...|..+.-...+++++...|.
T Consensus 504 avigigvEeed~~~tw~~da~~~~k~~~~~carAVya~alqv-fp~k~slWlra~~~ek~hgt~Esl~Allqkav~~~pk 582 (913)
T KOG0495|consen 504 AVIGIGVEEEDRKSTWLDDAQSCEKRPAIECARAVYAHALQV-FPCKKSLWLRAAMFEKSHGTRESLEALLQKAVEQCPK 582 (913)
T ss_pred HHHhhccccchhHhHHhhhHHHHHhcchHHHHHHHHHHHHhh-ccchhHHHHHHHHHHHhcCcHHHHHHHHHHHHHhCCc
Confidence 665432 2345667888888888888888888888888876 7778888888888877788888888888888888888
Q ss_pred CHHHHHHHHHHHHHcCCHHHHHHhcCCCCCCCcccCCCCCCChhhhHHHHHHHHHHHHHhcCCchhHHhhhhhhhhhhHH
Q 003563 346 NIDARLTLASLLLEEAKEEEAITLLSPPKDLDSLDMNSDKSNPWWLNEKIIMKLCHIYRAKGMPEDFVDAIFPLVCESLC 425 (810)
Q Consensus 346 ~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~~~ 425 (810)
....|...+..+...|+...|..++.++++.+|.+. ++++.-..+.....+++.|...+.++...+..
T Consensus 583 ae~lwlM~ake~w~agdv~~ar~il~~af~~~pnse------------eiwlaavKle~en~e~eraR~llakar~~sgT 650 (913)
T KOG0495|consen 583 AEILWLMYAKEKWKAGDVPAARVILDQAFEANPNSE------------EIWLAAVKLEFENDELERARDLLAKARSISGT 650 (913)
T ss_pred chhHHHHHHHHHHhcCCcHHHHHHHHHHHHhCCCcH------------HHHHHHHHHhhccccHHHHHHHHHHHhccCCc
Confidence 888888888888888888888888888888888753 46677777778888888888887766554322
Q ss_pred HHHHHHHhhhhhccchhhHHHHHhHhcCCCCCccccCCCCCCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccccCC
Q 003563 426 VEALRQKVKVKRRLTKGILQQRTKIYNNLPTDSILCGIRPAAPKSELLVAARARKKIQKKEALKEEKKALAKAAGVEWHS 505 (810)
Q Consensus 426 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 505 (810)
.+-....... .| .+....++.+++ ..+
T Consensus 651 eRv~mKs~~~-------------er--------------------~ld~~eeA~rll---------------Ee~----- 677 (913)
T KOG0495|consen 651 ERVWMKSANL-------------ER--------------------YLDNVEEALRLL---------------EEA----- 677 (913)
T ss_pred chhhHHHhHH-------------HH--------------------HhhhHHHHHHHH---------------HHH-----
Confidence 1000000000 00 000000111111 001
Q ss_pred CCCCchhhhhccCCCCCCCCCCchhhHHHHHHHHHHHHhhhcHHHHHHHHHHHHhhhhccCChhHHHHHHHhhhhhhccc
Q 003563 506 DDTDDESQQEAFREPPLPNLLKNEENQCLIIDLCKALASLQRYEEASEIINLSMRLAYNILPLEKKEELRSLGAKMAYDS 585 (810)
Q Consensus 506 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~eA~~~~~~al~~~~~~~~~~~~~~l~~~~~~~~~~~ 585 (810)
+-.+|+.+.+++.+|+++...++.+.|.+.|...++..+. ...|..+...+-...
T Consensus 678 -------------------lk~fp~f~Kl~lmlGQi~e~~~~ie~aR~aY~~G~k~cP~------~ipLWllLakleEk~ 732 (913)
T KOG0495|consen 678 -------------------LKSFPDFHKLWLMLGQIEEQMENIEMAREAYLQGTKKCPN------SIPLWLLLAKLEEKD 732 (913)
T ss_pred -------------------HHhCCchHHHHHHHhHHHHHHHHHHHHHHHHHhccccCCC------CchHHHHHHHHHHHh
Confidence 1236777888889999999999999998888887765543 333444444554556
Q ss_pred cCCchhHHHHHHHHHhCCCChhHhHHHHHHHHhhcccccccchhhHHHHHHHHhcCCCCCchhhhcchhhh--ccchHHH
Q 003563 586 TDPNHGFDCAKYILQLHPYSLSAWNCYYKVLSRMGKINSKHSKHSKFIRYLRAKYKDCVPPIIISGHQFTM--ASHHQDA 663 (810)
Q Consensus 586 ~~~~~a~~~~r~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~g~~~~~--~~~~~~A 663 (810)
|....|-..+.+..-++|.+...|.-..++-.+.|. ..-+.-.+.+.+++.|++--+. .-.|++. .++
T Consensus 733 ~~~~rAR~ildrarlkNPk~~~lwle~Ir~ElR~gn----~~~a~~lmakALQecp~sg~LW--aEaI~le~~~~r---- 802 (913)
T KOG0495|consen 733 GQLVRARSILDRARLKNPKNALLWLESIRMELRAGN----KEQAELLMAKALQECPSSGLLW--AEAIWLEPRPQR---- 802 (913)
T ss_pred cchhhHHHHHHHHHhcCCCcchhHHHHHHHHHHcCC----HHHHHHHHHHHHHhCCccchhH--HHHHHhccCccc----
Confidence 677788888888888899999999877777777766 2234555667888888663211 1111111 011
Q ss_pred HHHHHHHHhhCCCChHHHHHHHHHHHHHHhCccccchhHHHHHHHHHHHHhHhhcCCCchhhhhHHHHHHHhChhhHHHH
Q 003563 664 ARCYLEAYKLLPENPLINLCVGSALINLALGFRLQNKHQCLAQGFAFLYNNLRLCEHSQEALYNIARACHHVGLVSLAAS 743 (810)
Q Consensus 664 i~~y~~a~~~~p~~p~~~l~l~~~~~~~~~~r~~~~r~~~~~q~~~~l~~y~~~~~~~~e~~ynlgr~~~~lg~~~~Ai~ 743 (810)
-.-..-|++....||-+.+.+|..|.... .+.++.+.|.+..+..++...++-++=+.+.+.|--+.=.+
T Consensus 803 kTks~DALkkce~dphVllaia~lfw~e~----------k~~kar~Wf~Ravk~d~d~GD~wa~fykfel~hG~eed~ke 872 (913)
T KOG0495|consen 803 KTKSIDALKKCEHDPHVLLAIAKLFWSEK----------KIEKAREWFERAVKKDPDNGDAWAWFYKFELRHGTEEDQKE 872 (913)
T ss_pred chHHHHHHHhccCCchhHHHHHHHHHHHH----------HHHHHHHHHHHHHccCCccchHHHHHHHHHHHhCCHHHHHH
Confidence 11224577778889999999999987533 58899999999999999999999999999999999999999
Q ss_pred HHHHHhccccc
Q 003563 744 YYEKVLAIKEK 754 (810)
Q Consensus 744 ~Y~~vL~~~~~ 754 (810)
.|.++-.-.|.
T Consensus 873 v~~~c~~~EP~ 883 (913)
T KOG0495|consen 873 VLKKCETAEPT 883 (913)
T ss_pred HHHHHhccCCC
Confidence 99999988775
No 32
>PRK14574 hmsH outer membrane protein; Provisional
Probab=99.92 E-value=3e-21 Score=216.42 Aligned_cols=478 Identities=11% Similarity=0.006 Sum_probs=361.2
Q ss_pred HHHhCCCChHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHHHH
Q 003563 59 VVRLSPNLPETYNTLGLAHSALGNHKSAFDFYVIAAHLSPKDSALWKQLLTFAVQKGDTAQAMYYIRQAIRAEPKDISLR 138 (810)
Q Consensus 59 ~l~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~ 138 (810)
..-..|+.+...+..+.+..+.|+++.|+..|+++++.+|.++.....++.++...|+.++|+.++++++.-.|......
T Consensus 26 ~~~~~p~~~~~~y~~aii~~r~Gd~~~Al~~L~qaL~~~P~~~~av~dll~l~~~~G~~~~A~~~~eka~~p~n~~~~~l 105 (822)
T PRK14574 26 GFVVNPAMADTQYDSLIIRARAGDTAPVLDYLQEESKAGPLQSGQVDDWLQIAGWAGRDQEVIDVYERYQSSMNISSRGL 105 (822)
T ss_pred ccccCccchhHHHHHHHHHHhCCCHHHHHHHHHHHHhhCccchhhHHHHHHHHHHcCCcHHHHHHHHHhccCCCCCHHHH
Confidence 34457889999999999999999999999999999999999965544888888999999999999999994334444455
Q ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHhhCCCCCChHHHHHHHHHHHHc
Q 003563 139 IHLASFYVEIGDYEKAAESYEQIQKLFPDNVDATKTGAQLFLKCGQTARSIGILEEYLKVHPSDADLSVIDLLVAILMEN 218 (810)
Q Consensus 139 ~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~~~la~~~~~~ 218 (810)
..+|.++...|++++|++.|+++++.+|+++.++..++.++...++.++|++.++++...+|.... +..++.++...
T Consensus 106 lalA~ly~~~gdyd~Aiely~kaL~~dP~n~~~l~gLa~~y~~~~q~~eAl~~l~~l~~~dp~~~~---~l~layL~~~~ 182 (822)
T PRK14574 106 ASAARAYRNEKRWDQALALWQSSLKKDPTNPDLISGMIMTQADAGRGGVVLKQATELAERDPTVQN---YMTLSYLNRAT 182 (822)
T ss_pred HHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHhhcCCHHHHHHHHHHhcccCcchHH---HHHHHHHHHhc
Confidence 555889999999999999999999999999999999999999999999999999999999998543 34566666667
Q ss_pred CCHHHHHHHHHHHHHHhcCCCCCcHHHHHHHHHHHHhcCCHHHHHHHHHHhhccCCchhHhHHHHHHHHHHHcCCcHHHH
Q 003563 219 NAYEKTLQHIEHAQIVRFSGKELPLKLKVKAGICYLRLGNMEKAEILFADLQWKNAIDHADLITEVADTLMSLGHSNSAL 298 (810)
Q Consensus 219 g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~ 298 (810)
++..+|+..++++++. .|....++..+..++...|-...|.+..++-.....+ ....++. .+.|.
T Consensus 183 ~~~~~AL~~~ekll~~----~P~n~e~~~~~~~~l~~~~~~~~a~~l~~~~p~~f~~-~~~~~l~----------~~~~a 247 (822)
T PRK14574 183 DRNYDALQASSEAVRL----APTSEEVLKNHLEILQRNRIVEPALRLAKENPNLVSA-EHYRQLE----------RDAAA 247 (822)
T ss_pred chHHHHHHHHHHHHHh----CCCCHHHHHHHHHHHHHcCCcHHHHHHHHhCccccCH-HHHHHHH----------HHHHH
Confidence 8887799999999999 7888888899999999999999998887764322211 1111111 22233
Q ss_pred HHHHHHHhccCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHhhcCCCH-------HHHHHHHHHHHHcCCHHHHHHhcC
Q 003563 299 KYYHFLETNAGTDNGYLYLKLAECYLSLKERAHAIMFFYKALDRFEDNI-------DARLTLASLLLEEAKEEEAITLLS 371 (810)
Q Consensus 299 ~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~-------~~~~~la~~~~~~g~~~~A~~~~~ 371 (810)
+..+-+... .....+ .---.+.|+..+++.+...|..| .+....-.++...|++.++++.|+
T Consensus 248 ~~vr~a~~~-~~~~~~----------r~~~~d~ala~~~~l~~~~~~~p~~~~~~~~~~~Drl~aL~~r~r~~~vi~~y~ 316 (822)
T PRK14574 248 EQVRMAVLP-TRSETE----------RFDIADKALADYQNLLTRWGKDPEAQADYQRARIDRLGALLVRHQTADLIKEYE 316 (822)
T ss_pred HHHhhcccc-cccchh----------hHHHHHHHHHHHHHHHhhccCCCccchHHHHHHHHHHHHHHHhhhHHHHHHHHH
Confidence 332222111 000000 11124667777888777443322 334455567788899999999999
Q ss_pred CCCCCCcccCCCCCCChhhhHHHHHHHHHHHHHhcCCchhHHhhhhhhhhhhHHHHHHHHHhhhhhccchhhHHHHHhHh
Q 003563 372 PPKDLDSLDMNSDKSNPWWLNEKIIMKLCHIYRAKGMPEDFVDAIFPLVCESLCVEALRQKVKVKRRLTKGILQQRTKIY 451 (810)
Q Consensus 372 ~a~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 451 (810)
........-+ .-+....|..|...+++++|+.+|..++......
T Consensus 317 ~l~~~~~~~P-----------~y~~~a~adayl~~~~P~kA~~l~~~~~~~~~~~------------------------- 360 (822)
T PRK14574 317 AMEAEGYKMP-----------DYARRWAASAYIDRRLPEKAAPILSSLYYSDGKT------------------------- 360 (822)
T ss_pred HhhhcCCCCC-----------HHHHHHHHHHHHhcCCcHHHHHHHHHHhhccccc-------------------------
Confidence 7765442221 1378889999999999999999999887652110
Q ss_pred cCCCCCccccCCCCCCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccccCCCCCCchhhhhccCCCCCCCCCCchhh
Q 003563 452 NNLPTDSILCGIRPAAPKSELLVAARARKKIQKKEALKEEKKALAKAAGVEWHSDDTDDESQQEAFREPPLPNLLKNEEN 531 (810)
Q Consensus 452 ~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 531 (810)
+ ..+..
T Consensus 361 --------~------------------------------------------------------------------~~~~~ 366 (822)
T PRK14574 361 --------F------------------------------------------------------------------RNSDD 366 (822)
T ss_pred --------c------------------------------------------------------------------CCCcc
Confidence 0 00011
Q ss_pred HHHHHHHHHHHHhhhcHHHHHHHHHHHHhhhhc---------cCChhHHHHHHHhhhhhhccccCCchhHHHHHHHHHhC
Q 003563 532 QCLIIDLCKALASLQRYEEASEIINLSMRLAYN---------ILPLEKKEELRSLGAKMAYDSTDPNHGFDCAKYILQLH 602 (810)
Q Consensus 532 ~~~~~~~~~~~~~~~~~~eA~~~~~~al~~~~~---------~~~~~~~~~l~~~~~~~~~~~~~~~~a~~~~r~~~~~~ 602 (810)
......+-.++...+++++|..+++......+. ..+.+.-.....+.+.+....|+..+|.+.+..++...
T Consensus 367 ~~~~~~L~yA~ld~e~~~~A~~~l~~~~~~~p~~~~~~~~~~~~pn~d~~~~~~l~a~~~~~~gdl~~Ae~~le~l~~~a 446 (822)
T PRK14574 367 LLDADDLYYSLNESEQLDKAYQFAVNYSEQTPYQVGVYGLPGKEPNDDWIEGQTLLVQSLVALNDLPTAQKKLEDLSSTA 446 (822)
T ss_pred hHHHHHHHHHHHhcccHHHHHHHHHHHHhcCCcEEeccCCCCCCCCccHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC
Confidence 111234556788899999999999998874441 12334455666667777778899999999999999999
Q ss_pred CCChhHhHHHHHHHHhhcccccccchhhHHHHHHHHhcCCCCCchhhhcchhhhccchHHHHHHHHHHHhhCCCChH
Q 003563 603 PYSLSAWNCYYKVLSRMGKINSKHSKHSKFIRYLRAKYKDCVPPIIISGHQFTMASHHQDAARCYLEAYKLLPENPL 679 (810)
Q Consensus 603 p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~g~~~~~~~~~~~Ai~~y~~a~~~~p~~p~ 679 (810)
|.|...+..+..+....+. ..++...+.+....+|++..+.+..|.+....+.|..|-....++.+..|+++.
T Consensus 447 P~n~~l~~~~A~v~~~Rg~----p~~A~~~~k~a~~l~P~~~~~~~~~~~~al~l~e~~~A~~~~~~l~~~~Pe~~~ 519 (822)
T PRK14574 447 PANQNLRIALASIYLARDL----PRKAEQELKAVESLAPRSLILERAQAETAMALQEWHQMELLTDDVISRSPEDIP 519 (822)
T ss_pred CCCHHHHHHHHHHHHhcCC----HHHHHHHHHHHhhhCCccHHHHHHHHHHHHhhhhHHHHHHHHHHHHhhCCCchh
Confidence 9999999999888877666 456777788888889999999999999999999999999999999999999983
No 33
>PLN03081 pentatricopeptide (PPR) repeat-containing protein; Provisional
Probab=99.92 E-value=2.2e-21 Score=222.59 Aligned_cols=462 Identities=13% Similarity=0.076 Sum_probs=229.5
Q ss_pred HHHHHHHHHHcCChHHHHHHHHHHHhcCC--CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHc--CCCCHHHHHHHHHHH
Q 003563 70 YNTLGLAHSALGNHKSAFDFYVIAAHLSP--KDSALWKQLLTFAVQKGDTAQAMYYIRQAIRA--EPKDISLRIHLASFY 145 (810)
Q Consensus 70 ~~~l~~~~~~~g~~~~A~~~~~~a~~~~p--~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~--~p~~~~~~~~la~~~ 145 (810)
|..+...+...|++++|+..|..+....+ -+...+..+..++...++++.|...+..+.+. .| +...+..+..+|
T Consensus 90 ~~~~i~~l~~~g~~~~Al~~f~~m~~~~~~~~~~~t~~~ll~a~~~~~~~~~a~~l~~~m~~~g~~~-~~~~~n~Li~~y 168 (697)
T PLN03081 90 LCSQIEKLVACGRHREALELFEILEAGCPFTLPASTYDALVEACIALKSIRCVKAVYWHVESSGFEP-DQYMMNRVLLMH 168 (697)
T ss_pred HHHHHHHHHcCCCHHHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHhCCCc-chHHHHHHHHHH
Confidence 33344444445555555555544443221 13344444444455555555555555444432 22 234444455555
Q ss_pred HHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHhhCCCCCChHHHHHHHHHHHHcCCHHHHH
Q 003563 146 VEIGDYEKAAESYEQIQKLFPDNVDATKTGAQLFLKCGQTARSIGILEEYLKVHPSDADLSVIDLLVAILMENNAYEKTL 225 (810)
Q Consensus 146 ~~~g~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~~~la~~~~~~g~~~~A~ 225 (810)
.+.|++++|.+.|+++.+ .+...|..+...|.+.|++++|+..|+++.+..+.. +...+..+...+...|....+.
T Consensus 169 ~k~g~~~~A~~lf~~m~~---~~~~t~n~li~~~~~~g~~~~A~~lf~~M~~~g~~p-~~~t~~~ll~a~~~~~~~~~~~ 244 (697)
T PLN03081 169 VKCGMLIDARRLFDEMPE---RNLASWGTIIGGLVDAGNYREAFALFREMWEDGSDA-EPRTFVVMLRASAGLGSARAGQ 244 (697)
T ss_pred hcCCCHHHHHHHHhcCCC---CCeeeHHHHHHHHHHCcCHHHHHHHHHHHHHhCCCC-ChhhHHHHHHHHhcCCcHHHHH
Confidence 555555555555554422 133444555555555555555555555554432211 1123444444455555555555
Q ss_pred HHHHHHHHHhcCCCCCcHHHHHHHHHHHHhcCCHHHHHHHHHHhhccCCchhHhHHHHHHHHHHHcCCcHHHHHHHHHHH
Q 003563 226 QHIEHAQIVRFSGKELPLKLKVKAGICYLRLGNMEKAEILFADLQWKNAIDHADLITEVADTLMSLGHSNSALKYYHFLE 305 (810)
Q Consensus 226 ~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~ 305 (810)
+.+..+.+. + ...+..++..+...|.+.|++++|...|+.+.. .+...|..+...|.+.|++++|+.+|+++.
T Consensus 245 ~l~~~~~~~-g--~~~d~~~~n~Li~~y~k~g~~~~A~~vf~~m~~----~~~vt~n~li~~y~~~g~~~eA~~lf~~M~ 317 (697)
T PLN03081 245 QLHCCVLKT-G--VVGDTFVSCALIDMYSKCGDIEDARCVFDGMPE----KTTVAWNSMLAGYALHGYSEEALCLYYEMR 317 (697)
T ss_pred HHHHHHHHh-C--CCccceeHHHHHHHHHHCCCHHHHHHHHHhCCC----CChhHHHHHHHHHHhCCCHHHHHHHHHHHH
Confidence 554444433 1 112233444455555555555555555554421 134445555555555555555555555554
Q ss_pred hccCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHhhc-CCCHHHHHHHHHHHHHcCCHHHHHHhcCCCCCCCcccCCCC
Q 003563 306 TNAGTDNGYLYLKLAECYLSLKERAHAIMFFYKALDRF-EDNIDARLTLASLLLEEAKEEEAITLLSPPKDLDSLDMNSD 384 (810)
Q Consensus 306 ~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~ 384 (810)
......+..++..+..++.+.|++++|.+.+..+++.. +.+..++..|...|.+.|++++|.+.|++..+.+.
T Consensus 318 ~~g~~pd~~t~~~ll~a~~~~g~~~~a~~i~~~m~~~g~~~d~~~~~~Li~~y~k~G~~~~A~~vf~~m~~~d~------ 391 (697)
T PLN03081 318 DSGVSIDQFTFSIMIRIFSRLALLEHAKQAHAGLIRTGFPLDIVANTALVDLYSKWGRMEDARNVFDRMPRKNL------ 391 (697)
T ss_pred HcCCCCCHHHHHHHHHHHHhccchHHHHHHHHHHHHhCCCCCeeehHHHHHHHHHCCCHHHHHHHHHhCCCCCe------
Confidence 43333344455555555555555555555555555443 33444555555555555555555555555433211
Q ss_pred CCChhhhHHHHHHHHHHHHHhcCCchhHHhhhhhhhhhhHHHHHHHHHhhhhhccchhhHHHHHhHhcCCCCCccccCCC
Q 003563 385 KSNPWWLNEKIIMKLCHIYRAKGMPEDFVDAIFPLVCESLCVEALRQKVKVKRRLTKGILQQRTKIYNNLPTDSILCGIR 464 (810)
Q Consensus 385 ~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 464 (810)
..+..+...|.+.|+.++|++.|+++.+.+..|+. .+|.++.
T Consensus 392 ---------~t~n~lI~~y~~~G~~~~A~~lf~~M~~~g~~Pd~-----------------------------~T~~~ll 433 (697)
T PLN03081 392 ---------ISWNALIAGYGNHGRGTKAVEMFERMIAEGVAPNH-----------------------------VTFLAVL 433 (697)
T ss_pred ---------eeHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCCH-----------------------------HHHHHHH
Confidence 13345555555555555555555555544222111 0111110
Q ss_pred CCCCchHHHH-HHHHHHHHHHHHHHHHHHHHHHHhcccccCCCCCCchhhhhccCCCCCCCCCCchhhHHHHHHHHHHHH
Q 003563 465 PAAPKSELLV-AARARKKIQKKEALKEEKKALAKAAGVEWHSDDTDDESQQEAFREPPLPNLLKNEENQCLIIDLCKALA 543 (810)
Q Consensus 465 ~~~~~~~~~~-~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 543 (810)
..+.+.+... +.+....+. .-.++.++...+.++ ...+.
T Consensus 434 ~a~~~~g~~~~a~~~f~~m~-------------------------------------~~~g~~p~~~~y~~l---i~~l~ 473 (697)
T PLN03081 434 SACRYSGLSEQGWEIFQSMS-------------------------------------ENHRIKPRAMHYACM---IELLG 473 (697)
T ss_pred HHHhcCCcHHHHHHHHHHHH-------------------------------------HhcCCCCCccchHhH---HHHHH
Confidence 0011110000 000000000 000111233445554 45899
Q ss_pred hhhcHHHHHHHHHHHHhhhhccCChhHHHHHHHhhhhhhccccCCchhHHHHHHHHHhCCCChhHhHHHHHHHHhhcccc
Q 003563 544 SLQRYEEASEIINLSMRLAYNILPLEKKEELRSLGAKMAYDSTDPNHGFDCAKYILQLHPYSLSAWNCYYKVLSRMGKIN 623 (810)
Q Consensus 544 ~~~~~~eA~~~~~~al~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~a~~~~r~~~~~~p~~~~~~~~~~~~~~~~~~~~ 623 (810)
+.|+.+||.++++.+. ..+. ...+..+...| ...|+.+.|...+++++...|.+...+.++..++.+.|+|
T Consensus 474 r~G~~~eA~~~~~~~~------~~p~-~~~~~~Ll~a~-~~~g~~~~a~~~~~~l~~~~p~~~~~y~~L~~~y~~~G~~- 544 (697)
T PLN03081 474 REGLLDEAYAMIRRAP------FKPT-VNMWAALLTAC-RIHKNLELGRLAAEKLYGMGPEKLNNYVVLLNLYNSSGRQ- 544 (697)
T ss_pred hcCCHHHHHHHHHHCC------CCCC-HHHHHHHHHHH-HHcCCcHHHHHHHHHHhCCCCCCCcchHHHHHHHHhCCCH-
Confidence 9999999999987653 2222 22344444444 4568999999999999999999988999998888888884
Q ss_pred cccchhhHHHHHHHHh
Q 003563 624 SKHSKHSKFIRYLRAK 639 (810)
Q Consensus 624 ~~~~~~~~~~~~~~~~ 639 (810)
..+.+.+..+.++
T Consensus 545 ---~~A~~v~~~m~~~ 557 (697)
T PLN03081 545 ---AEAAKVVETLKRK 557 (697)
T ss_pred ---HHHHHHHHHHHHc
Confidence 3666666666554
No 34
>PLN03218 maturation of RBCL 1; Provisional
Probab=99.92 E-value=8.6e-20 Score=210.53 Aligned_cols=369 Identities=13% Similarity=0.088 Sum_probs=310.3
Q ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHhCCC--ChHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHc
Q 003563 37 LGEASLQYAYGNFEQAISLLKEVVRLSPN--LPETYNTLGLAHSALGNHKSAFDFYVIAAHLSPKDSALWKQLLTFAVQK 114 (810)
Q Consensus 37 l~~a~~~~~~g~~~~A~~~~~~~l~~~p~--~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~p~~~~~~~~la~~~~~~ 114 (810)
+..-..+.+.|++++|+.+|+++.+.+.- +...+..+...+...|..++|..+++.... | +...|..+...+...
T Consensus 374 ~~~y~~l~r~G~l~eAl~Lfd~M~~~gvv~~~~v~~~~li~~~~~~g~~~eAl~lf~~M~~--p-d~~Tyn~LL~a~~k~ 450 (1060)
T PLN03218 374 IDAYNRLLRDGRIKDCIDLLEDMEKRGLLDMDKIYHAKFFKACKKQRAVKEAFRFAKLIRN--P-TLSTFNMLMSVCASS 450 (1060)
T ss_pred HHHHHHHHHCcCHHHHHHHHHHHHhCCCCCchHHHHHHHHHHHHHCCCHHHHHHHHHHcCC--C-CHHHHHHHHHHHHhC
Confidence 33334567889999999999999876532 334445566778889999999999987654 4 577888999999999
Q ss_pred CCHHHHHHHHHHHHHcCC-CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCC-CCHHHHHHHHHHHHHcCChHHHHHHH
Q 003563 115 GDTAQAMYYIRQAIRAEP-KDISLRIHLASFYVEIGDYEKAAESYEQIQKLFP-DNVDATKTGAQLFLKCGQTARSIGIL 192 (810)
Q Consensus 115 g~~~~A~~~~~~al~~~p-~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p-~~~~~~~~la~~~~~~g~~~~A~~~~ 192 (810)
|++++|...+.++.+... .+...+..+...|.+.|+.++|.+.|+++.+... .+...|..+...|.+.|++++|+..|
T Consensus 451 g~~e~A~~lf~~M~~~Gl~pD~~tynsLI~~y~k~G~vd~A~~vf~eM~~~Gv~PdvvTynaLI~gy~k~G~~eeAl~lf 530 (1060)
T PLN03218 451 QDIDGALRVLRLVQEAGLKADCKLYTTLISTCAKSGKVDAMFEVFHEMVNAGVEANVHTFGALIDGCARAGQVAKAFGAY 530 (1060)
T ss_pred cCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhCcCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHCcCHHHHHHHH
Confidence 999999999999988653 3567889999999999999999999999988654 37889999999999999999999999
Q ss_pred HHHHhhCCCCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhcCCCCCcHHHHHHHHHHHHhcCCHHHHHHHHHHhhcc
Q 003563 193 EEYLKVHPSDADLSVIDLLVAILMENNAYEKTLQHIEHAQIVRFSGKELPLKLKVKAGICYLRLGNMEKAEILFADLQWK 272 (810)
Q Consensus 193 ~~~l~~~p~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~ 272 (810)
+.+.+..-. ++...|+.+...+.+.|++++|.+.+.++... ...-..+...+..+...|.+.|++++|..+|+.+...
T Consensus 531 ~~M~~~Gv~-PD~vTYnsLI~a~~k~G~~deA~~lf~eM~~~-~~gi~PD~vTynaLI~ay~k~G~ldeA~elf~~M~e~ 608 (1060)
T PLN03218 531 GIMRSKNVK-PDRVVFNALISACGQSGAVDRAFDVLAEMKAE-THPIDPDHITVGALMKACANAGQVDRAKEVYQMIHEY 608 (1060)
T ss_pred HHHHHcCCC-CCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHh-cCCCCCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHHc
Confidence 998765322 23347999999999999999999999998763 1112334567888889999999999999999999887
Q ss_pred CCchhHhHHHHHHHHHHHcCCcHHHHHHHHHHHhccCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHhhc-CCCHHHHH
Q 003563 273 NAIDHADLITEVADTLMSLGHSNSALKYYHFLETNAGTDNGYLYLKLAECYLSLKERAHAIMFFYKALDRF-EDNIDARL 351 (810)
Q Consensus 273 ~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~ 351 (810)
+...+...|..+...|.+.|++++|+.+|+.+.......+...|..+...+.+.|++++|.+.++.+.+.. +.+..++.
T Consensus 609 gi~p~~~tynsLI~ay~k~G~~deAl~lf~eM~~~Gv~PD~~TynsLI~a~~k~G~~eeA~~l~~eM~k~G~~pd~~tyn 688 (1060)
T PLN03218 609 NIKGTPEVYTIAVNSCSQKGDWDFALSIYDDMKKKGVKPDEVFFSALVDVAGHAGDLDKAFEILQDARKQGIKLGTVSYS 688 (1060)
T ss_pred CCCCChHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCHHHHH
Confidence 75557889999999999999999999999999877556678899999999999999999999999998864 45678999
Q ss_pred HHHHHHHHcCCHHHHHHhcCCCCCC--CcccCCCCCCChhhhHHHHHHHHHHHHHhcCCchhHHhhhhhhhhhh
Q 003563 352 TLASLLLEEAKEEEAITLLSPPKDL--DSLDMNSDKSNPWWLNEKIIMKLCHIYRAKGMPEDFVDAIFPLVCES 423 (810)
Q Consensus 352 ~la~~~~~~g~~~~A~~~~~~a~~~--~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~ 423 (810)
.+...|.+.|++++|.++|++..+. .|+ ...+..+...|.+.|++++|.+.+..+...+
T Consensus 689 sLI~ay~k~G~~eeA~~lf~eM~~~g~~Pd-------------vvtyN~LI~gy~k~G~~eeAlelf~eM~~~G 749 (1060)
T PLN03218 689 SLMGACSNAKNWKKALELYEDIKSIKLRPT-------------VSTMNALITALCEGNQLPKALEVLSEMKRLG 749 (1060)
T ss_pred HHHHHHHhCCCHHHHHHHHHHHHHcCCCCC-------------HHHHHHHHHHHHHCCCHHHHHHHHHHHHHcC
Confidence 9999999999999999999977543 332 3578999999999999999999999987654
No 35
>KOG1155 consensus Anaphase-promoting complex (APC), Cdc23 subunit [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=99.92 E-value=2.2e-21 Score=189.69 Aligned_cols=330 Identities=17% Similarity=0.147 Sum_probs=282.0
Q ss_pred ChHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCC--CCHHHHHHHHH
Q 003563 66 LPETYNTLGLAHSALGNHKSAFDFYVIAAHLSPKDSALWKQLLTFAVQKGDTAQAMYYIRQAIRAEP--KDISLRIHLAS 143 (810)
Q Consensus 66 ~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p--~~~~~~~~la~ 143 (810)
++-.++..|.++.+.|....|+..|..++...|-+..+|..|+.+... +.........-| .+.-.-+.++.
T Consensus 163 D~fllYL~Gvv~k~~~~~s~A~~sfv~~v~~~P~~W~AWleL~~lit~-------~e~~~~l~~~l~~~~h~M~~~F~~~ 235 (559)
T KOG1155|consen 163 DEFLLYLYGVVLKELGLLSLAIDSFVEVVNRYPWFWSAWLELSELITD-------IEILSILVVGLPSDMHWMKKFFLKK 235 (559)
T ss_pred hhHHHHHHHHHHHhhchHHHHHHHHHHHHhcCCcchHHHHHHHHhhch-------HHHHHHHHhcCcccchHHHHHHHHH
Confidence 455678889999999999999999999999889999999888776532 223333333334 33444566788
Q ss_pred HHHHcCCHHHHHHHHHHHHHh-CCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHhhCCCCCChHHHHHHHHHHHHcCCHH
Q 003563 144 FYVEIGDYEKAAESYEQIQKL-FPDNVDATKTGAQLFLKCGQTARSIGILEEYLKVHPSDADLSVIDLLVAILMENNAYE 222 (810)
Q Consensus 144 ~~~~~g~~~~A~~~~~~~l~~-~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~~~la~~~~~~g~~~ 222 (810)
++....+.++++.-++..... .|.+.-.....|.+.....++++|+..|+.+.+.+|-..+ -...+..++.-..+-.
T Consensus 236 a~~el~q~~e~~~k~e~l~~~gf~~~~~i~~~~A~~~y~~rDfD~a~s~Feei~knDPYRl~--dmdlySN~LYv~~~~s 313 (559)
T KOG1155|consen 236 AYQELHQHEEALQKKERLSSVGFPNSMYIKTQIAAASYNQRDFDQAESVFEEIRKNDPYRLD--DMDLYSNVLYVKNDKS 313 (559)
T ss_pred HHHHHHHHHHHHHHHHHHHhccCCccHHHHHHHHHHHhhhhhHHHHHHHHHHHHhcCCCcch--hHHHHhHHHHHHhhhH
Confidence 888888999999999999888 8999988899999999999999999999999999997765 3456666666555544
Q ss_pred HHHHHHHHHHHHhcCCCCCcHHHHHHHHHHHHhcCCHHHHHHHHHHhhccCCchhHhHHHHHHHHHHHcCCcHHHHHHHH
Q 003563 223 KTLQHIEHAQIVRFSGKELPLKLKVKAGICYLRLGNMEKAEILFADLQWKNAIDHADLITEVADTLMSLGHSNSALKYYH 302 (810)
Q Consensus 223 ~A~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~ 302 (810)
+-.-.-+.+..+ +...++....+|..|.-.++.++|+.+|+++++.+|. ...+|..+|.-|...++...|++.|+
T Consensus 314 kLs~LA~~v~~i----dKyR~ETCCiIaNYYSlr~eHEKAv~YFkRALkLNp~-~~~aWTLmGHEyvEmKNt~AAi~sYR 388 (559)
T KOG1155|consen 314 KLSYLAQNVSNI----DKYRPETCCIIANYYSLRSEHEKAVMYFKRALKLNPK-YLSAWTLMGHEYVEMKNTHAAIESYR 388 (559)
T ss_pred HHHHHHHHHHHh----ccCCccceeeehhHHHHHHhHHHHHHHHHHHHhcCcc-hhHHHHHhhHHHHHhcccHHHHHHHH
Confidence 444444555555 6677788888999999999999999999999999996 99999999999999999999999999
Q ss_pred HHHhccCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHhhcCCCHHHHHHHHHHHHHcCCHHHHHHhcCCCCCCCcccCC
Q 003563 303 FLETNAGTDNGYLYLKLAECYLSLKERAHAIMFFYKALDRFEDNIDARLTLASLLLEEAKEEEAITLLSPPKDLDSLDMN 382 (810)
Q Consensus 303 ~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~ 382 (810)
++++. .|.+-.+|+.+|..|.-++.+.=|+-+|+++.+..|+++..|..||.+|.++++.++|+++|.+++.....+.
T Consensus 389 rAvdi-~p~DyRAWYGLGQaYeim~Mh~YaLyYfqkA~~~kPnDsRlw~aLG~CY~kl~~~~eAiKCykrai~~~dte~- 466 (559)
T KOG1155|consen 389 RAVDI-NPRDYRAWYGLGQAYEIMKMHFYALYYFQKALELKPNDSRLWVALGECYEKLNRLEEAIKCYKRAILLGDTEG- 466 (559)
T ss_pred HHHhc-CchhHHHHhhhhHHHHHhcchHHHHHHHHHHHhcCCCchHHHHHHHHHHHHhccHHHHHHHHHHHHhccccch-
Confidence 99988 9999999999999999999999999999999999999999999999999999999999999999998876543
Q ss_pred CCCCChhhhHHHHHHHHHHHHHhcCCchhHHhhhhhhhhh
Q 003563 383 SDKSNPWWLNEKIIMKLCHIYRAKGMPEDFVDAIFPLVCE 422 (810)
Q Consensus 383 ~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~ 422 (810)
.++..+|.+|.+.++.++|...|.+.++.
T Consensus 467 -----------~~l~~LakLye~l~d~~eAa~~yek~v~~ 495 (559)
T KOG1155|consen 467 -----------SALVRLAKLYEELKDLNEAAQYYEKYVEV 495 (559)
T ss_pred -----------HHHHHHHHHHHHHHhHHHHHHHHHHHHHH
Confidence 58999999999999999999999988866
No 36
>KOG0548 consensus Molecular co-chaperone STI1 [Posttranslational modification, protein turnover, chaperones]
Probab=99.92 E-value=4.4e-22 Score=199.18 Aligned_cols=356 Identities=20% Similarity=0.235 Sum_probs=286.9
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHc
Q 003563 35 KMLGEASLQYAYGNFEQAISLLKEVVRLSPNLPETYNTLGLAHSALGNHKSAFDFYVIAAHLSPKDSALWKQLLTFAVQK 114 (810)
Q Consensus 35 ~~l~~a~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~p~~~~~~~~la~~~~~~ 114 (810)
.+-.+|+..+..|+|+.|+.+|.+++.++|.+...+.+...+|...|+|++|++.-.+.++++|+-+..|..+|..+.-+
T Consensus 4 e~k~kgnaa~s~~d~~~ai~~~t~ai~l~p~nhvlySnrsaa~a~~~~~~~al~da~k~~~l~p~w~kgy~r~Gaa~~~l 83 (539)
T KOG0548|consen 4 ELKEKGNAAFSSGDFETAIRLFTEAIMLSPTNHVLYSNRSAAYASLGSYEKALKDATKTRRLNPDWAKGYSRKGAALFGL 83 (539)
T ss_pred HHHHHHHhhcccccHHHHHHHHHHHHccCCCccchhcchHHHHHHHhhHHHHHHHHHHHHhcCCchhhHHHHhHHHHHhc
Confidence 45578999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHcCC---------------------HHHHHHHHHHHHH---hCCCC--
Q 003563 115 GDTAQAMYYIRQAIRAEPKDISLRIHLASFYVEIGD---------------------YEKAAESYEQIQK---LFPDN-- 168 (810)
Q Consensus 115 g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~---------------------~~~A~~~~~~~l~---~~p~~-- 168 (810)
|+|++|+..|.+.++.+|++......++.++...-. +-..-..|...++ .+|.+
T Consensus 84 g~~~eA~~ay~~GL~~d~~n~~L~~gl~~a~~~~~~~~~~~~~p~~~~~l~~~p~t~~~~~~~~~~~~l~~~~~~p~~l~ 163 (539)
T KOG0548|consen 84 GDYEEAILAYSEGLEKDPSNKQLKTGLAQAYLEDYAADQLFTKPYFHEKLANLPLTNYSLSDPAYVKILEIIQKNPTSLK 163 (539)
T ss_pred ccHHHHHHHHHHHhhcCCchHHHHHhHHHhhhHHHHhhhhccCcHHHHHhhcChhhhhhhccHHHHHHHHHhhcCcHhhh
Confidence 999999999999999999999998888887732200 0001111111111 11110
Q ss_pred ------------------------------------------------------------HHHHHHHHHHHHHcCChHHH
Q 003563 169 ------------------------------------------------------------VDATKTGAQLFLKCGQTARS 188 (810)
Q Consensus 169 ------------------------------------------------------------~~~~~~la~~~~~~g~~~~A 188 (810)
......+|.......+++.|
T Consensus 164 ~~l~d~r~m~a~~~l~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~d~~ee~~~k~~a~~ek~lgnaaykkk~f~~a 243 (539)
T KOG0548|consen 164 LYLNDPRLMKADGQLKGVDELLFYASGIEILASMAEPCKQEHNGFPIIEDNTEERRVKEKAHKEKELGNAAYKKKDFETA 243 (539)
T ss_pred cccccHHHHHHHHHHhcCccccccccccccCCCCCCcccccCCCCCccchhHHHHHHHHhhhHHHHHHHHHHHhhhHHHH
Confidence 01245678888889999999
Q ss_pred HHHHHHHHhhCCCCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhcCC---CCCcHHHHHHHHHHHHhcCCHHHHHHH
Q 003563 189 IGILEEYLKVHPSDADLSVIDLLVAILMENNAYEKTLQHIEHAQIVRFSG---KELPLKLKVKAGICYLRLGNMEKAEIL 265 (810)
Q Consensus 189 ~~~~~~~l~~~p~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~---~~~~~~~~~~la~~~~~~g~~~~A~~~ 265 (810)
++.|..++.++ .+.. -+.+.+-+|+..|.+.+.+....++++.-... ...-......+|..+...++++.|+.+
T Consensus 244 ~q~y~~a~el~-~~it--~~~n~aA~~~e~~~~~~c~~~c~~a~E~gre~rad~klIak~~~r~g~a~~k~~~~~~ai~~ 320 (539)
T KOG0548|consen 244 IQHYAKALELA-TDIT--YLNNIAAVYLERGKYAECIELCEKAVEVGRELRADYKLIAKALARLGNAYTKREDYEGAIKY 320 (539)
T ss_pred HHHHHHHHhHh-hhhH--HHHHHHHHHHhccHHHHhhcchHHHHHHhHHHHHHHHHHHHHHHHhhhhhhhHHhHHHHHHH
Confidence 99999999998 5554 57789999999999999999888877651100 011123344466788888999999999
Q ss_pred HHHhhccCCc-------------------------hhHhHHHHHHHHHHHcCCcHHHHHHHHHHHhccCCCCHHHHHHHH
Q 003563 266 FADLQWKNAI-------------------------DHADLITEVADTLMSLGHSNSALKYYHFLETNAGTDNGYLYLKLA 320 (810)
Q Consensus 266 ~~~~~~~~~~-------------------------~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~la 320 (810)
|.+++..... ........-|..++..|+|..|+..|.+++.. .|+++.+|.+.|
T Consensus 321 ~~kaLte~Rt~~~ls~lk~~Ek~~k~~e~~a~~~pe~A~e~r~kGne~Fk~gdy~~Av~~YteAIkr-~P~Da~lYsNRA 399 (539)
T KOG0548|consen 321 YQKALTEHRTPDLLSKLKEAEKALKEAERKAYINPEKAEEEREKGNEAFKKGDYPEAVKHYTEAIKR-DPEDARLYSNRA 399 (539)
T ss_pred HHHHhhhhcCHHHHHHHHHHHHHHHHHHHHHhhChhHHHHHHHHHHHHHhccCHHHHHHHHHHHHhc-CCchhHHHHHHH
Confidence 9997764432 01122344588899999999999999999987 899999999999
Q ss_pred HHHHHccCHHHHHHHHHHHHhhcCCCHHHHHHHHHHHHHcCCHHHHHHhcCCCCCCCcccCCCCCCChhhhHHHHHHHHH
Q 003563 321 ECYLSLKERAHAIMFFYKALDRFEDNIDARLTLASLLLEEAKEEEAITLLSPPKDLDSLDMNSDKSNPWWLNEKIIMKLC 400 (810)
Q Consensus 321 ~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~la 400 (810)
.||.++|.+..|+...+++++++|+...+++.-|.++..+.+|++|++.|+++++.+|.+. ++...+.
T Consensus 400 ac~~kL~~~~~aL~Da~~~ieL~p~~~kgy~RKg~al~~mk~ydkAleay~eale~dp~~~------------e~~~~~~ 467 (539)
T KOG0548|consen 400 ACYLKLGEYPEALKDAKKCIELDPNFIKAYLRKGAALRAMKEYDKALEAYQEALELDPSNA------------EAIDGYR 467 (539)
T ss_pred HHHHHHhhHHHHHHHHHHHHhcCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCchhH------------HHHHHHH
Confidence 9999999999999999999999999999999999999999999999999999999999763 4555555
Q ss_pred HHHHhc
Q 003563 401 HIYRAK 406 (810)
Q Consensus 401 ~~~~~~ 406 (810)
+++..+
T Consensus 468 rc~~a~ 473 (539)
T KOG0548|consen 468 RCVEAQ 473 (539)
T ss_pred HHHHHh
Confidence 555543
No 37
>PLN03218 maturation of RBCL 1; Provisional
Probab=99.91 E-value=2.5e-19 Score=206.75 Aligned_cols=366 Identities=13% Similarity=0.086 Sum_probs=312.4
Q ss_pred HHHHHcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHcCChHHHHHHHHHHHhcCC-CCHHHHHHHHHHHHHcCCHHH
Q 003563 41 SLQYAYGNFEQAISLLKEVVRLSPNLPETYNTLGLAHSALGNHKSAFDFYVIAAHLSP-KDSALWKQLLTFAVQKGDTAQ 119 (810)
Q Consensus 41 ~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~p-~~~~~~~~la~~~~~~g~~~~ 119 (810)
..+...|..++|..+++.... | +...|..+-..+...|+++.|...+.++.+... .+...|..+...|.+.|+.++
T Consensus 414 ~~~~~~g~~~eAl~lf~~M~~--p-d~~Tyn~LL~a~~k~g~~e~A~~lf~~M~~~Gl~pD~~tynsLI~~y~k~G~vd~ 490 (1060)
T PLN03218 414 KACKKQRAVKEAFRFAKLIRN--P-TLSTFNMLMSVCASSQDIDGALRVLRLVQEAGLKADCKLYTTLISTCAKSGKVDA 490 (1060)
T ss_pred HHHHHCCCHHHHHHHHHHcCC--C-CHHHHHHHHHHHHhCcCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhCcCHHH
Confidence 346678999999999987754 4 567888888999999999999999999987653 367889999999999999999
Q ss_pred HHHHHHHHHHcCC-CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCC-CCHHHHHHHHHHHHHcCChHHHHHHHHHHHh
Q 003563 120 AMYYIRQAIRAEP-KDISLRIHLASFYVEIGDYEKAAESYEQIQKLFP-DNVDATKTGAQLFLKCGQTARSIGILEEYLK 197 (810)
Q Consensus 120 A~~~~~~al~~~p-~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p-~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~ 197 (810)
|...|+++.+... .+...|..+...|.+.|++++|++.|..+....- .+...+..+...+.+.|++++|.++++++..
T Consensus 491 A~~vf~eM~~~Gv~PdvvTynaLI~gy~k~G~~eeAl~lf~~M~~~Gv~PD~vTYnsLI~a~~k~G~~deA~~lf~eM~~ 570 (1060)
T PLN03218 491 MFEVFHEMVNAGVEANVHTFGALIDGCARAGQVAKAFGAYGIMRSKNVKPDRVVFNALISACGQSGAVDRAFDVLAEMKA 570 (1060)
T ss_pred HHHHHHHHHHcCCCCCHHHHHHHHHHHHHCcCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHH
Confidence 9999999998653 3678899999999999999999999999976532 3577899999999999999999999999976
Q ss_pred h-CCCCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhcCCCCCcHHHHHHHHHHHHhcCCHHHHHHHHHHhhccCCch
Q 003563 198 V-HPSDADLSVIDLLVAILMENNAYEKTLQHIEHAQIVRFSGKELPLKLKVKAGICYLRLGNMEKAEILFADLQWKNAID 276 (810)
Q Consensus 198 ~-~p~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~ 276 (810)
. .+-.++...+..+...|.+.|++++|.+.|+++.+. + .+.....+..+...|.+.|++++|..+|.++.......
T Consensus 571 ~~~gi~PD~vTynaLI~ay~k~G~ldeA~elf~~M~e~-g--i~p~~~tynsLI~ay~k~G~~deAl~lf~eM~~~Gv~P 647 (1060)
T PLN03218 571 ETHPIDPDHITVGALMKACANAGQVDRAKEVYQMIHEY-N--IKGTPEVYTIAVNSCSQKGDWDFALSIYDDMKKKGVKP 647 (1060)
T ss_pred hcCCCCCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHHc-C--CCCChHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCC
Confidence 3 222333447889999999999999999999998876 1 24456788899999999999999999999998765444
Q ss_pred hHhHHHHHHHHHHHcCCcHHHHHHHHHHHhccCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHhhc-CCCHHHHHHHHH
Q 003563 277 HADLITEVADTLMSLGHSNSALKYYHFLETNAGTDNGYLYLKLAECYLSLKERAHAIMFFYKALDRF-EDNIDARLTLAS 355 (810)
Q Consensus 277 ~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~la~ 355 (810)
+...+..+...+.+.|++++|.++++.+.+...+.+..++..+...|.+.|++++|.+.|++..... ..+...|..+..
T Consensus 648 D~~TynsLI~a~~k~G~~eeA~~l~~eM~k~G~~pd~~tynsLI~ay~k~G~~eeA~~lf~eM~~~g~~PdvvtyN~LI~ 727 (1060)
T PLN03218 648 DEVFFSALVDVAGHAGDLDKAFEILQDARKQGIKLGTVSYSSLMGACSNAKNWKKALELYEDIKSIKLRPTVSTMNALIT 727 (1060)
T ss_pred CHHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHH
Confidence 6778999999999999999999999999987667889999999999999999999999999987642 335788999999
Q ss_pred HHHHcCCHHHHHHhcCCCCCC--CcccCCCCCCChhhhHHHHHHHHHHHHHhcCCchhHHhhhhhhhhhhHH
Q 003563 356 LLLEEAKEEEAITLLSPPKDL--DSLDMNSDKSNPWWLNEKIIMKLCHIYRAKGMPEDFVDAIFPLVCESLC 425 (810)
Q Consensus 356 ~~~~~g~~~~A~~~~~~a~~~--~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~~~ 425 (810)
.|.+.|++++|.++++++... .|+ ...+..+...+...|+.++|.+.+..+++.+..
T Consensus 728 gy~k~G~~eeAlelf~eM~~~Gi~Pd-------------~~Ty~sLL~a~~k~G~le~A~~l~~~M~k~Gi~ 786 (1060)
T PLN03218 728 ALCEGNQLPKALEVLSEMKRLGLCPN-------------TITYSILLVASERKDDADVGLDLLSQAKEDGIK 786 (1060)
T ss_pred HHHHCCCHHHHHHHHHHHHHcCCCCC-------------HHHHHHHHHHHHHCCCHHHHHHHHHHHHHcCCC
Confidence 999999999999999977543 333 347788889999999999999999999887554
No 38
>PLN03081 pentatricopeptide (PPR) repeat-containing protein; Provisional
Probab=99.91 E-value=2e-20 Score=214.61 Aligned_cols=467 Identities=10% Similarity=0.036 Sum_probs=343.6
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCC--CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHH
Q 003563 101 SALWKQLLTFAVQKGDTAQAMYYIRQAIRAEP--KDISLRIHLASFYVEIGDYEKAAESYEQIQKLF-PDNVDATKTGAQ 177 (810)
Q Consensus 101 ~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p--~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~-p~~~~~~~~la~ 177 (810)
...|..+...+...|++++|+..|+.+....| -+...+..+...+...++.+.|...+..+.+.. ..+..++..+..
T Consensus 87 ~~~~~~~i~~l~~~g~~~~Al~~f~~m~~~~~~~~~~~t~~~ll~a~~~~~~~~~a~~l~~~m~~~g~~~~~~~~n~Li~ 166 (697)
T PLN03081 87 GVSLCSQIEKLVACGRHREALELFEILEAGCPFTLPASTYDALVEACIALKSIRCVKAVYWHVESSGFEPDQYMMNRVLL 166 (697)
T ss_pred ceeHHHHHHHHHcCCCHHHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHhCCCcchHHHHHHHH
Confidence 34577788889999999999999999887543 356678888899999999999999999888753 235788899999
Q ss_pred HHHHcCChHHHHHHHHHHHhhCCCCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhcCCCCCcHHHHHHHHHHHHhcC
Q 003563 178 LFLKCGQTARSIGILEEYLKVHPSDADLSVIDLLVAILMENNAYEKTLQHIEHAQIVRFSGKELPLKLKVKAGICYLRLG 257 (810)
Q Consensus 178 ~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g 257 (810)
.|.+.|++++|.++|++..+ |+. ..|+.+...|.+.|++++|+..|+++.+. + ...+...+..+...+...|
T Consensus 167 ~y~k~g~~~~A~~lf~~m~~--~~~---~t~n~li~~~~~~g~~~~A~~lf~~M~~~-g--~~p~~~t~~~ll~a~~~~~ 238 (697)
T PLN03081 167 MHVKCGMLIDARRLFDEMPE--RNL---ASWGTIIGGLVDAGNYREAFALFREMWED-G--SDAEPRTFVVMLRASAGLG 238 (697)
T ss_pred HHhcCCCHHHHHHHHhcCCC--CCe---eeHHHHHHHHHHCcCHHHHHHHHHHHHHh-C--CCCChhhHHHHHHHHhcCC
Confidence 99999999999999998853 433 26889999999999999999999999865 2 2334455667777888999
Q ss_pred CHHHHHHHHHHhhccCCchhHhHHHHHHHHHHHcCCcHHHHHHHHHHHhccCCCCHHHHHHHHHHHHHccCHHHHHHHHH
Q 003563 258 NMEKAEILFADLQWKNAIDHADLITEVADTLMSLGHSNSALKYYHFLETNAGTDNGYLYLKLAECYLSLKERAHAIMFFY 337 (810)
Q Consensus 258 ~~~~A~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~ 337 (810)
..+.+..++..+.......+..++..+...|.+.|++++|..+|+.+. +.+..+|..+...|.+.|++++|...|+
T Consensus 239 ~~~~~~~l~~~~~~~g~~~d~~~~n~Li~~y~k~g~~~~A~~vf~~m~----~~~~vt~n~li~~y~~~g~~~eA~~lf~ 314 (697)
T PLN03081 239 SARAGQQLHCCVLKTGVVGDTFVSCALIDMYSKCGDIEDARCVFDGMP----EKTTVAWNSMLAGYALHGYSEEALCLYY 314 (697)
T ss_pred cHHHHHHHHHHHHHhCCCccceeHHHHHHHHHHCCCHHHHHHHHHhCC----CCChhHHHHHHHHHHhCCCHHHHHHHHH
Confidence 999999998888776655577889999999999999999999998664 3477899999999999999999999999
Q ss_pred HHHhhc-CCCHHHHHHHHHHHHHcCCHHHHHHhcCCCCCCCcccCCCCCCChhhhHHHHHHHHHHHHHhcCCchhHHhhh
Q 003563 338 KALDRF-EDNIDARLTLASLLLEEAKEEEAITLLSPPKDLDSLDMNSDKSNPWWLNEKIIMKLCHIYRAKGMPEDFVDAI 416 (810)
Q Consensus 338 ~al~~~-p~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~ 416 (810)
+..+.. .-+..++..+...+.+.|++++|.+++..+.+..... +..++..+...|.+.|+.++|.+.|
T Consensus 315 ~M~~~g~~pd~~t~~~ll~a~~~~g~~~~a~~i~~~m~~~g~~~-----------d~~~~~~Li~~y~k~G~~~~A~~vf 383 (697)
T PLN03081 315 EMRDSGVSIDQFTFSIMIRIFSRLALLEHAKQAHAGLIRTGFPL-----------DIVANTALVDLYSKWGRMEDARNVF 383 (697)
T ss_pred HHHHcCCCCCHHHHHHHHHHHHhccchHHHHHHHHHHHHhCCCC-----------CeeehHHHHHHHHHCCCHHHHHHHH
Confidence 987653 3356788999999999999999999999887665321 1247789999999999999999999
Q ss_pred hhhhhhhHHHHHHHHHhhhhhccchhhHHHHHhHhcCCCCCccccCCCCCCCchHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 003563 417 FPLVCESLCVEALRQKVKVKRRLTKGILQQRTKIYNNLPTDSILCGIRPAAPKSELLVAARARKKIQKKEALKEEKKALA 496 (810)
Q Consensus 417 ~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~~~~~ 496 (810)
..+.+.... .. ..+..|+. ......++......+
T Consensus 384 ~~m~~~d~~--t~---------------------------n~lI~~y~---~~G~~~~A~~lf~~M-------------- 417 (697)
T PLN03081 384 DRMPRKNLI--SW---------------------------NALIAGYG---NHGRGTKAVEMFERM-------------- 417 (697)
T ss_pred HhCCCCCee--eH---------------------------HHHHHHHH---HcCCHHHHHHHHHHH--------------
Confidence 887643110 00 00000000 000001111111100
Q ss_pred HhcccccCCCCCCchhhhhccCCCCCCCCCCchhhHHHHHHHHHHHHhhhcHHHHHHHHHHHHhhhhccCChhHHHHHHH
Q 003563 497 KAAGVEWHSDDTDDESQQEAFREPPLPNLLKNEENQCLIIDLCKALASLQRYEEASEIINLSMRLAYNILPLEKKEELRS 576 (810)
Q Consensus 497 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~eA~~~~~~al~~~~~~~~~~~~~~l~~ 576 (810)
...|+ .| +..++..+...+.+.|..++|.++++.+.+... ..|.... ..
T Consensus 418 ~~~g~--------------------------~P-d~~T~~~ll~a~~~~g~~~~a~~~f~~m~~~~g--~~p~~~~--y~ 466 (697)
T PLN03081 418 IAEGV--------------------------AP-NHVTFLAVLSACRYSGLSEQGWEIFQSMSENHR--IKPRAMH--YA 466 (697)
T ss_pred HHhCC--------------------------CC-CHHHHHHHHHHHhcCCcHHHHHHHHHHHHHhcC--CCCCccc--hH
Confidence 00011 12 233456666788999999999999998875221 1222111 12
Q ss_pred hhhhhhccccCCchhHHHHHHHHHhCCCChhHhHHHHHHHHhhcccccccchhhHHHHHHHHhcCCCCCchhhhcchhhh
Q 003563 577 LGAKMAYDSTDPNHGFDCAKYILQLHPYSLSAWNCYYKVLSRMGKINSKHSKHSKFIRYLRAKYKDCVPPIIISGHQFTM 656 (810)
Q Consensus 577 ~~~~~~~~~~~~~~a~~~~r~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~g~~~~~ 656 (810)
..+.+....|+.++|.+.++.+- ..| +...|+.+.......++ ...+.+.+.++++..|++...+.+..+++..
T Consensus 467 ~li~~l~r~G~~~eA~~~~~~~~-~~p-~~~~~~~Ll~a~~~~g~----~~~a~~~~~~l~~~~p~~~~~y~~L~~~y~~ 540 (697)
T PLN03081 467 CMIELLGREGLLDEAYAMIRRAP-FKP-TVNMWAALLTACRIHKN----LELGRLAAEKLYGMGPEKLNNYVVLLNLYNS 540 (697)
T ss_pred hHHHHHHhcCCHHHHHHHHHHCC-CCC-CHHHHHHHHHHHHHcCC----cHHHHHHHHHHhCCCCCCCcchHHHHHHHHh
Confidence 23334457799999988776531 233 34568877666666665 3456667777788888888788888999999
Q ss_pred ccchHHHHHHHHHHHhh
Q 003563 657 ASHHQDAARCYLEAYKL 673 (810)
Q Consensus 657 ~~~~~~Ai~~y~~a~~~ 673 (810)
.|++++|...+....+.
T Consensus 541 ~G~~~~A~~v~~~m~~~ 557 (697)
T PLN03081 541 SGRQAEAAKVVETLKRK 557 (697)
T ss_pred CCCHHHHHHHHHHHHHc
Confidence 99999999999877654
No 39
>KOG2003 consensus TPR repeat-containing protein [General function prediction only]
Probab=99.90 E-value=1.6e-21 Score=189.44 Aligned_cols=500 Identities=15% Similarity=0.182 Sum_probs=340.6
Q ss_pred CCHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh------------CCC------ChHHHHHHHHHHHHcCChHHHHHHH
Q 003563 29 LSPGVTKMLGEASLQYAYGNFEQAISLLKEVVRL------------SPN------LPETYNTLGLAHSALGNHKSAFDFY 90 (810)
Q Consensus 29 ~~~~~~~~l~~a~~~~~~g~~~~A~~~~~~~l~~------------~p~------~~~~~~~l~~~~~~~g~~~~A~~~~ 90 (810)
+..++..++....+.-..|++.+|+.-.+.+=+. -|. ...+++.|+.-|....-+.+|+..|
T Consensus 145 le~ev~ell~es~ian~~~~~k~aldkakdagrker~lvk~req~~~~e~inldltfsvl~nlaqqy~~ndm~~ealnty 224 (840)
T KOG2003|consen 145 LEKEVMELLEESCIANECGDFKEALDKAKDAGRKERALVKHREQQGLPEMINLDLTFSVLFNLAQQYEANDMTAEALNTY 224 (840)
T ss_pred HHHHHHHHHHHHHHHhhhhhHHHHHHHHHhcchhHHHHHHHHHhccchhhccccchHHHHHHHHHHhhhhHHHHHHhhhh
Confidence 3446777888888888899999998877654221 122 2356788898888888889999999
Q ss_pred HHHHh--cCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCC-----HHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Q 003563 91 VIAAH--LSPKDSALWKQLLTFAVQKGDTAQAMYYIRQAIRAEPKD-----ISLRIHLASFYVEIGDYEKAAESYEQIQK 163 (810)
Q Consensus 91 ~~a~~--~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~-----~~~~~~la~~~~~~g~~~~A~~~~~~~l~ 163 (810)
+..+. ..|+....-.++|.++++..++.+|+++|+-++..-|.- ...+.++|..+.+.|+|+.|+..|+.+.+
T Consensus 225 eiivknkmf~nag~lkmnigni~~kkr~fskaikfyrmaldqvpsink~~rikil~nigvtfiq~gqy~dainsfdh~m~ 304 (840)
T KOG2003|consen 225 EIIVKNKMFPNAGILKMNIGNIHFKKREFSKAIKFYRMALDQVPSINKDMRIKILNNIGVTFIQAGQYDDAINSFDHCME 304 (840)
T ss_pred hhhhcccccCCCceeeeeecceeeehhhHHHHHHHHHHHHhhccccchhhHHHHHhhcCeeEEecccchhhHhhHHHHHH
Confidence 87764 357777777889999999999999999999999877743 34577888889999999999999999999
Q ss_pred hCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHhhC--C---------CCCChHHHHH-HH-HHH--HHcCCHHHHHHHH
Q 003563 164 LFPDNVDATKTGAQLFLKCGQTARSIGILEEYLKVH--P---------SDADLSVIDL-LV-AIL--MENNAYEKTLQHI 228 (810)
Q Consensus 164 ~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~--p---------~~~~~~~~~~-la-~~~--~~~g~~~~A~~~~ 228 (810)
..|+... -+++..+++..|+-++-.+.|.+++.+. | ++++...++. +- ..+ +...+-..|.+..
T Consensus 305 ~~pn~~a-~~nl~i~~f~i~d~ekmkeaf~kli~ip~~~dddkyi~~~ddp~~~ll~eai~nd~lk~~ek~~ka~aek~i 383 (840)
T KOG2003|consen 305 EAPNFIA-ALNLIICAFAIGDAEKMKEAFQKLIDIPGEIDDDKYIKEKDDPDDNLLNEAIKNDHLKNMEKENKADAEKAI 383 (840)
T ss_pred hCccHHh-hhhhhhhheecCcHHHHHHHHHHHhcCCCCCCcccccCCcCCcchHHHHHHHhhHHHHHHHHhhhhhHHHHH
Confidence 9986544 4577788899999999999999988652 1 1112111111 00 001 1112222333333
Q ss_pred HHHHHHh---------------------cCCCCCcHHHHHHHHHHHHhcCCHHHHHHHHHHhhccCCchhHhHHHHHHHH
Q 003563 229 EHAQIVR---------------------FSGKELPLKLKVKAGICYLRLGNMEKAEILFADLQWKNAIDHADLITEVADT 287 (810)
Q Consensus 229 ~~~~~~~---------------------~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~la~~ 287 (810)
-.+.++. ....+...++-.+.+.-+++.|+++.|++.++-.-..+......+-.++..+
T Consensus 384 ~ta~kiiapvi~~~fa~g~dwcle~lk~s~~~~la~dlei~ka~~~lk~~d~~~aieilkv~~~kdnk~~saaa~nl~~l 463 (840)
T KOG2003|consen 384 ITAAKIIAPVIAPDFAAGCDWCLESLKASQHAELAIDLEINKAGELLKNGDIEGAIEILKVFEKKDNKTASAAANNLCAL 463 (840)
T ss_pred HHHHHHhccccccchhcccHHHHHHHHHhhhhhhhhhhhhhHHHHHHhccCHHHHHHHHHHHHhccchhhHHHhhhhHHH
Confidence 3322221 1123455566777888899999999999998877665554344455556555
Q ss_pred HHHcC--CcHHHHHHHHHHHhccCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHhhcCCCHHHHHHHHHHHHHcCCHHH
Q 003563 288 LMSLG--HSNSALKYYHFLETNAGTDNGYLYLKLAECYLSLKERAHAIMFFYKALDRFEDNIDARLTLASLLLEEAKEEE 365 (810)
Q Consensus 288 ~~~~~--~~~~A~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~ 365 (810)
++.+| ++..|..+.+.++.. +.-++.+..+.|.+.+..|++++|.+.|+.++..+....++++++|..+..+|+.++
T Consensus 464 ~flqggk~~~~aqqyad~aln~-dryn~~a~~nkgn~~f~ngd~dka~~~ykeal~ndasc~ealfniglt~e~~~~lde 542 (840)
T KOG2003|consen 464 RFLQGGKDFADAQQYADIALNI-DRYNAAALTNKGNIAFANGDLDKAAEFYKEALNNDASCTEALFNIGLTAEALGNLDE 542 (840)
T ss_pred HHHhcccchhHHHHHHHHHhcc-cccCHHHhhcCCceeeecCcHHHHHHHHHHHHcCchHHHHHHHHhcccHHHhcCHHH
Confidence 55533 678888888888865 677888888888888888999999999999988888888899999999999999999
Q ss_pred HHHhcCCCCCCCcccCCCCCCChhhhHHHHHHHHHHHHHhcCCchhHHhhhhhhhhhhHH-HHHHHHHhhhhhccchhhH
Q 003563 366 AITLLSPPKDLDSLDMNSDKSNPWWLNEKIIMKLCHIYRAKGMPEDFVDAIFPLVCESLC-VEALRQKVKVKRRLTKGIL 444 (810)
Q Consensus 366 A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~~~-~~~~~~~~~~~~~~~~~~~ 444 (810)
|+++|-+.-.+-.++ .++++.++.+|....+..+|++.+.++..--+. +..+
T Consensus 543 ald~f~klh~il~nn------------~evl~qianiye~led~aqaie~~~q~~slip~dp~il--------------- 595 (840)
T KOG2003|consen 543 ALDCFLKLHAILLNN------------AEVLVQIANIYELLEDPAQAIELLMQANSLIPNDPAIL--------------- 595 (840)
T ss_pred HHHHHHHHHHHHHhh------------HHHHHHHHHHHHHhhCHHHHHHHHHHhcccCCCCHHHH---------------
Confidence 998887654443333 468889999999999999999888776544221 1000
Q ss_pred HHHHhHhcCCCCCccccCCCCCCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccccCCCCCCchhhhhccCCCCCCC
Q 003563 445 QQRTKIYNNLPTDSILCGIRPAAPKSELLVAARARKKIQKKEALKEEKKALAKAAGVEWHSDDTDDESQQEAFREPPLPN 524 (810)
Q Consensus 445 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 524 (810)
.......... .+..+ +..++-+ +-..+|.
T Consensus 596 skl~dlydqe--gdksq--------------------------------------afq~~yd-----------syryfp~ 624 (840)
T KOG2003|consen 596 SKLADLYDQE--GDKSQ--------------------------------------AFQCHYD-----------SYRYFPC 624 (840)
T ss_pred HHHHHHhhcc--cchhh--------------------------------------hhhhhhh-----------cccccCc
Confidence 0000000000 00000 0000000 0111222
Q ss_pred CCCchhhHHHHHHHHHHHHhhhcHHHHHHHHHHHHhhhhccCChhHHHHHHHhhhhhhccccCCchhHHHHHHHHHhCCC
Q 003563 525 LLKNEENQCLIIDLCKALASLQRYEEASEIINLSMRLAYNILPLEKKEELRSLGAKMAYDSTDPNHGFDCAKYILQLHPY 604 (810)
Q Consensus 525 ~~~~~~~~~~~~~~~~~~~~~~~~~eA~~~~~~al~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~a~~~~r~~~~~~p~ 604 (810)
-+...+| ++-.++...=.+.|+.+++++--+ .+....+..+.++|.-++|++..|++.++..-.++|.
T Consensus 625 nie~iew------l~ayyidtqf~ekai~y~ekaali------qp~~~kwqlmiasc~rrsgnyqka~d~yk~~hrkfpe 692 (840)
T KOG2003|consen 625 NIETIEW------LAAYYIDTQFSEKAINYFEKAALI------QPNQSKWQLMIASCFRRSGNYQKAFDLYKDIHRKFPE 692 (840)
T ss_pred chHHHHH------HHHHHHhhHHHHHHHHHHHHHHhc------CccHHHHHHHHHHHHHhcccHHHHHHHHHHHHHhCcc
Confidence 1222344 444566666778899999887633 2335667778888988999999999999999999999
Q ss_pred ChhHhHHHHHHHHhhc
Q 003563 605 SLSAWNCYYKVLSRMG 620 (810)
Q Consensus 605 ~~~~~~~~~~~~~~~~ 620 (810)
+..-..++..+....|
T Consensus 693 dldclkflvri~~dlg 708 (840)
T KOG2003|consen 693 DLDCLKFLVRIAGDLG 708 (840)
T ss_pred chHHHHHHHHHhcccc
Confidence 9887766655544333
No 40
>KOG2003 consensus TPR repeat-containing protein [General function prediction only]
Probab=99.90 E-value=1.2e-21 Score=190.19 Aligned_cols=371 Identities=16% Similarity=0.149 Sum_probs=277.6
Q ss_pred CHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH--hCCCChHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCCC-----HH
Q 003563 30 SPGVTKMLGEASLQYAYGNFEQAISLLKEVVR--LSPNLPETYNTLGLAHSALGNHKSAFDFYVIAAHLSPKD-----SA 102 (810)
Q Consensus 30 ~~~~~~~l~~a~~~~~~g~~~~A~~~~~~~l~--~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~p~~-----~~ 102 (810)
+-....++..|..|-...-+.+|+..|+-+++ ..|+....-..+|.++++..++.+|+++|+.++..-|.- ..
T Consensus 198 dltfsvl~nlaqqy~~ndm~~ealntyeiivknkmf~nag~lkmnigni~~kkr~fskaikfyrmaldqvpsink~~rik 277 (840)
T KOG2003|consen 198 DLTFSVLFNLAQQYEANDMTAEALNTYEIIVKNKMFPNAGILKMNIGNIHFKKREFSKAIKFYRMALDQVPSINKDMRIK 277 (840)
T ss_pred cchHHHHHHHHHHhhhhHHHHHHhhhhhhhhcccccCCCceeeeeecceeeehhhHHHHHHHHHHHHhhccccchhhHHH
Confidence 33556778899999999999999999998876 467777778899999999999999999999999988863 35
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC--CC---------CH-H
Q 003563 103 LWKQLLTFAVQKGDTAQAMYYIRQAIRAEPKDISLRIHLASFYVEIGDYEKAAESYEQIQKLF--PD---------NV-D 170 (810)
Q Consensus 103 ~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~--p~---------~~-~ 170 (810)
.+.++|..+.+.|+|+.|+..|+.+++..|+.. +-+++..+++..|+-++-.+.|.+++.+- |+ ++ +
T Consensus 278 il~nigvtfiq~gqy~dainsfdh~m~~~pn~~-a~~nl~i~~f~i~d~ekmkeaf~kli~ip~~~dddkyi~~~ddp~~ 356 (840)
T KOG2003|consen 278 ILNNIGVTFIQAGQYDDAINSFDHCMEEAPNFI-AALNLIICAFAIGDAEKMKEAFQKLIDIPGEIDDDKYIKEKDDPDD 356 (840)
T ss_pred HHhhcCeeEEecccchhhHhhHHHHHHhCccHH-hhhhhhhhheecCcHHHHHHHHHHHhcCCCCCCcccccCCcCCcch
Confidence 677889999999999999999999999999655 45678889999999999999999998751 11 11 1
Q ss_pred HHHHHHH---H--HHHcCChHHHHHHHHHHHhh-----CCCCC----------------C--hHHHHHHHHHHHHcCCHH
Q 003563 171 ATKTGAQ---L--FLKCGQTARSIGILEEYLKV-----HPSDA----------------D--LSVIDLLVAILMENNAYE 222 (810)
Q Consensus 171 ~~~~la~---~--~~~~g~~~~A~~~~~~~l~~-----~p~~~----------------~--~~~~~~la~~~~~~g~~~ 222 (810)
.+.+-+. . .+...+-..|.+..-.+.++ .|+.. . ...-.+.+.-+++.|+++
T Consensus 357 ~ll~eai~nd~lk~~ek~~ka~aek~i~ta~kiiapvi~~~fa~g~dwcle~lk~s~~~~la~dlei~ka~~~lk~~d~~ 436 (840)
T KOG2003|consen 357 NLLNEAIKNDHLKNMEKENKADAEKAIITAAKIIAPVIAPDFAAGCDWCLESLKASQHAELAIDLEINKAGELLKNGDIE 436 (840)
T ss_pred HHHHHHHhhHHHHHHHHhhhhhHHHHHHHHHHHhccccccchhcccHHHHHHHHHhhhhhhhhhhhhhHHHHHHhccCHH
Confidence 1111111 1 11222223333333333222 12110 0 012236677788899999
Q ss_pred HHHHHHHHHHHHhcCCCCCcHHHHHHHHHHHHhc--CCHHHHHHHHHHhhccCCchhHhHHHHHHHHHHHcCCcHHHHHH
Q 003563 223 KTLQHIEHAQIVRFSGKELPLKLKVKAGICYLRL--GNMEKAEILFADLQWKNAIDHADLITEVADTLMSLGHSNSALKY 300 (810)
Q Consensus 223 ~A~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~--g~~~~A~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~ 300 (810)
.|++.++-.-.. +......+..++..+++.+ .++..|..+...++..+.- ++.+..+.|.+.+..|++++|.+.
T Consensus 437 ~aieilkv~~~k---dnk~~saaa~nl~~l~flqggk~~~~aqqyad~aln~dry-n~~a~~nkgn~~f~ngd~dka~~~ 512 (840)
T KOG2003|consen 437 GAIEILKVFEKK---DNKTASAAANNLCALRFLQGGKDFADAQQYADIALNIDRY-NAAALTNKGNIAFANGDLDKAAEF 512 (840)
T ss_pred HHHHHHHHHHhc---cchhhHHHhhhhHHHHHHhcccchhHHHHHHHHHhccccc-CHHHhhcCCceeeecCcHHHHHHH
Confidence 999887655443 1222334445555555553 3677888888888776653 777888888888889999999999
Q ss_pred HHHHHhccCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHhhcCCCHHHHHHHHHHHHHcCCHHHHHHhcCCCCCCCccc
Q 003563 301 YHFLETNAGTDNGYLYLKLAECYLSLKERAHAIMFFYKALDRFEDNIDARLTLASLLLEEAKEEEAITLLSPPKDLDSLD 380 (810)
Q Consensus 301 ~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~ 380 (810)
|..++.. +..-..+++++|..+..+|+.++|+.+|-+.-.+--++.+++..++.+|..+.+..+|++++.++..+-|.+
T Consensus 513 ykeal~n-dasc~ealfniglt~e~~~~ldeald~f~klh~il~nn~evl~qianiye~led~aqaie~~~q~~slip~d 591 (840)
T KOG2003|consen 513 YKEALNN-DASCTEALFNIGLTAEALGNLDEALDCFLKLHAILLNNAEVLVQIANIYELLEDPAQAIELLMQANSLIPND 591 (840)
T ss_pred HHHHHcC-chHHHHHHHHhcccHHHhcCHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHhhCHHHHHHHHHHhcccCCCC
Confidence 9888865 666778888899999999999999999988888888888999999999999999999999999888888876
Q ss_pred CCCCCCChhhhHHHHHHHHHHHHHhcCCchhHHhhhhh
Q 003563 381 MNSDKSNPWWLNEKIIMKLCHIYRAKGMPEDFVDAIFP 418 (810)
Q Consensus 381 ~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~ 418 (810)
+ .++..||.+|-+.|+-.+|.+.+-.
T Consensus 592 p------------~ilskl~dlydqegdksqafq~~yd 617 (840)
T KOG2003|consen 592 P------------AILSKLADLYDQEGDKSQAFQCHYD 617 (840)
T ss_pred H------------HHHHHHHHHhhcccchhhhhhhhhh
Confidence 4 5888899999999988888877643
No 41
>KOG4162 consensus Predicted calmodulin-binding protein [Signal transduction mechanisms]
Probab=99.89 E-value=1.2e-18 Score=181.42 Aligned_cols=416 Identities=17% Similarity=0.124 Sum_probs=282.4
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHHhcCCCCCcHHHHHHHHHHHHhcCCHHHHHHHHHHhhccC--CchhHhHHHH
Q 003563 206 SVIDLLVAILMENNAYEKTLQHIEHAQIVRFSGKELPLKLKVKAGICYLRLGNMEKAEILFADLQWKN--AIDHADLITE 283 (810)
Q Consensus 206 ~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~--~~~~~~~~~~ 283 (810)
.++..+.......|+++.+.+.|++++.. .-...+.|+.++.++...|....|+.+++...... |+ ++..+..
T Consensus 324 ai~d~Lt~al~~~g~f~~lae~fE~~~~~----~~~~~e~w~~~als~saag~~s~Av~ll~~~~~~~~~ps-~~s~~Lm 398 (799)
T KOG4162|consen 324 AIFDHLTFALSRCGQFEVLAEQFEQALPF----SFGEHERWYQLALSYSAAGSDSKAVNLLRESLKKSEQPS-DISVLLM 398 (799)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhHh----hhhhHHHHHHHHHHHHHhccchHHHHHHHhhcccccCCC-cchHHHH
Confidence 36667777777888888888888888766 45566778888888888888888888888876655 54 3444444
Q ss_pred H-HHHHHHcCCcHHHHHHHHHHHhcc----CCCCHHHHHHHHHHHHHcc-----------CHHHHHHHHHHHHhhcCCCH
Q 003563 284 V-ADTLMSLGHSNSALKYYHFLETNA----GTDNGYLYLKLAECYLSLK-----------ERAHAIMFFYKALDRFEDNI 347 (810)
Q Consensus 284 l-a~~~~~~~~~~~A~~~~~~~~~~~----~~~~~~~~~~la~~~~~~g-----------~~~~A~~~~~~al~~~p~~~ 347 (810)
. ..+....+..++++++..+++... ..-.+..+..+|.+|..+- ...++++.++++++.+|+|+
T Consensus 399 asklc~e~l~~~eegldYA~kai~~~~~~~~~l~~~~~l~lGi~y~~~A~~a~~~seR~~~h~kslqale~av~~d~~dp 478 (799)
T KOG4162|consen 399 ASKLCIERLKLVEEGLDYAQKAISLLGGQRSHLKPRGYLFLGIAYGFQARQANLKSERDALHKKSLQALEEAVQFDPTDP 478 (799)
T ss_pred HHHHHHhchhhhhhHHHHHHHHHHHhhhhhhhhhhhHHHHHHHHHHhHhhcCCChHHHHHHHHHHHHHHHHHHhcCCCCc
Confidence 4 444456778888888888887631 1235667777777775432 25678888888888888888
Q ss_pred HHHHHHHHHHHHcCCHHHHHHhcCCCCCCCcccCCCCCCChhhhHHHHHHHHHHHHHhcCCchhHHhhhhhhhhhhHHHH
Q 003563 348 DARLTLASLLLEEAKEEEAITLLSPPKDLDSLDMNSDKSNPWWLNEKIIMKLCHIYRAKGMPEDFVDAIFPLVCESLCVE 427 (810)
Q Consensus 348 ~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~~~~~ 427 (810)
.+.+.++.-|...++.+.|..+..++++.++.+. ...+.-++.++-.++++.+|+.+....+.+..++
T Consensus 479 ~~if~lalq~A~~R~l~sAl~~~~eaL~l~~~~~-----------~~~whLLALvlSa~kr~~~Al~vvd~al~E~~~N- 546 (799)
T KOG4162|consen 479 LVIFYLALQYAEQRQLTSALDYAREALALNRGDS-----------AKAWHLLALVLSAQKRLKEALDVVDAALEEFGDN- 546 (799)
T ss_pred hHHHHHHHHHHHHHhHHHHHHHHHHHHHhcCCcc-----------HHHHHHHHHHHhhhhhhHHHHHHHHHHHHHhhhh-
Confidence 8888888888888888888888888888877653 3567888888888888888888887777663331
Q ss_pred HHHHHhhhhhccchhhHHHHHhHhcCCCCCccccCCCCCCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccccCCCC
Q 003563 428 ALRQKVKVKRRLTKGILQQRTKIYNNLPTDSILCGIRPAAPKSELLVAARARKKIQKKEALKEEKKALAKAAGVEWHSDD 507 (810)
Q Consensus 428 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 507 (810)
T Consensus 547 -------------------------------------------------------------------------------- 546 (799)
T KOG4162|consen 547 -------------------------------------------------------------------------------- 546 (799)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred CCchhhhhccCCCCCCCCCCchhhHHHHHHHHHHHHhhhcHHHHHHHHHHHHhhhhcc----CChhHHHHHHHhhhhhhc
Q 003563 508 TDDESQQEAFREPPLPNLLKNEENQCLIIDLCKALASLQRYEEASEIINLSMRLAYNI----LPLEKKEELRSLGAKMAY 583 (810)
Q Consensus 508 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~eA~~~~~~al~~~~~~----~~~~~~~~l~~~~~~~~~ 583 (810)
+.++.--..+....|+.++|+..|.+.+.+=... +.-+ ...+.-+......
T Consensus 547 ------------------------~~l~~~~~~i~~~~~~~e~~l~t~~~~L~~we~~~~~q~~~~-~g~~~~lk~~l~l 601 (799)
T KOG4162|consen 547 ------------------------HVLMDGKIHIELTFNDREEALDTCIHKLALWEAEYGVQQTLD-EGKLLRLKAGLHL 601 (799)
T ss_pred ------------------------hhhchhhhhhhhhcccHHHHHHHHHHHHHHHHhhhhHhhhhh-hhhhhhhhccccc
Confidence 1111111111222444455555554444321100 0000 0011111222222
Q ss_pred cccCCchhHHHHHHHHHh-------------------CCCChh-------HhHHHHHHHHhhcccccccchhhHHHHHHH
Q 003563 584 DSTDPNHGFDCAKYILQL-------------------HPYSLS-------AWNCYYKVLSRMGKINSKHSKHSKFIRYLR 637 (810)
Q Consensus 584 ~~~~~~~a~~~~r~~~~~-------------------~p~~~~-------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 637 (810)
...+..++....|++... -|.... .|.+........+. ...+...+...-
T Consensus 602 a~~q~~~a~s~sr~ls~l~a~~~~~~~se~~Lp~s~~~~~~~~~~~~~~~lwllaa~~~~~~~~----~~~a~~CL~Ea~ 677 (799)
T KOG4162|consen 602 ALSQPTDAISTSRYLSSLVASQLKSAGSELKLPSSTVLPGPDSLWYLLQKLWLLAADLFLLSGN----DDEARSCLLEAS 677 (799)
T ss_pred CcccccccchhhHHHHHHHHhhhhhcccccccCcccccCCCCchHHHHHHHHHHHHHHHHhcCC----chHHHHHHHHHH
Confidence 223444555555554321 122222 33333333333332 112223344555
Q ss_pred HhcCCCCCchhhhcchhhhccchHHHHHHHHHHHhhCCCChHHHHHHHHHHHHHHhCccccchhHHHHHHHHHHHHhHhh
Q 003563 638 AKYKDCVPPIIISGHQFTMASHHQDAARCYLEAYKLLPENPLINLCVGSALINLALGFRLQNKHQCLAQGFAFLYNNLRL 717 (810)
Q Consensus 638 ~~~p~~~~~~~~~g~~~~~~~~~~~Ai~~y~~a~~~~p~~p~~~l~l~~~~~~~~~~r~~~~r~~~~~q~~~~l~~y~~~ 717 (810)
+-.|-++..++..|..+...|.+.+|...|.-|+.++|+++.+.-.+|.++...+.+ .+.+.-+++....++
T Consensus 678 ~~~~l~~~~~~~~G~~~~~~~~~~EA~~af~~Al~ldP~hv~s~~Ala~~lle~G~~--------~la~~~~~L~dalr~ 749 (799)
T KOG4162|consen 678 KIDPLSASVYYLRGLLLEVKGQLEEAKEAFLVALALDPDHVPSMTALAELLLELGSP--------RLAEKRSLLSDALRL 749 (799)
T ss_pred hcchhhHHHHHHhhHHHHHHHhhHHHHHHHHHHHhcCCCCcHHHHHHHHHHHHhCCc--------chHHHHHHHHHHHhh
Confidence 566777777888999999999999999999999999999999999999999977733 244555789999999
Q ss_pred cCCCchhhhhHHHHHHHhChhhHHHHHHHHHhcccccc
Q 003563 718 CEHSQEALYNIARACHHVGLVSLAASYYEKVLAIKEKD 755 (810)
Q Consensus 718 ~~~~~e~~ynlgr~~~~lg~~~~Ai~~Y~~vL~~~~~~ 755 (810)
.|.+.|+||++|.++.++|..+.|+++|..++++++.+
T Consensus 750 dp~n~eaW~~LG~v~k~~Gd~~~Aaecf~aa~qLe~S~ 787 (799)
T KOG4162|consen 750 DPLNHEAWYYLGEVFKKLGDSKQAAECFQAALQLEESN 787 (799)
T ss_pred CCCCHHHHHHHHHHHHHccchHHHHHHHHHHHhhccCC
Confidence 99999999999999999999999999999999998764
No 42
>KOG1156 consensus N-terminal acetyltransferase [Chromatin structure and dynamics]
Probab=99.89 E-value=1.5e-17 Score=170.13 Aligned_cols=379 Identities=18% Similarity=0.224 Sum_probs=290.2
Q ss_pred CCHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCCCHHHHHHHH
Q 003563 29 LSPGVTKMLGEASLQYAYGNFEQAISLLKEVVRLSPNLPETYNTLGLAHSALGNHKSAFDFYVIAAHLSPKDSALWKQLL 108 (810)
Q Consensus 29 ~~~~~~~~l~~a~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~p~~~~~~~~la 108 (810)
+||.-..+|.++.-.+..++|...++..+.++...|++++.+...|..+..+|+.++|......++..++.+...|..+|
T Consensus 3 l~~KE~~lF~~~lk~yE~kQYkkgLK~~~~iL~k~~eHgeslAmkGL~L~~lg~~~ea~~~vr~glr~d~~S~vCwHv~g 82 (700)
T KOG1156|consen 3 LSPKENALFRRALKCYETKQYKKGLKLIKQILKKFPEHGESLAMKGLTLNCLGKKEEAYELVRLGLRNDLKSHVCWHVLG 82 (700)
T ss_pred CChHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHhCCccchhHHhccchhhcccchHHHHHHHHHHhccCcccchhHHHHH
Confidence 67888899999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHcCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCChHHH
Q 003563 109 TFAVQKGDTAQAMYYIRQAIRAEPKDISLRIHLASFYVEIGDYEKAAESYEQIQKLFPDNVDATKTGAQLFLKCGQTARS 188 (810)
Q Consensus 109 ~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A 188 (810)
.++....+|++|++||+.|+..+|+|...+..++.+..++++++.....-.+.++..|.....|...|..+...|++..|
T Consensus 83 l~~R~dK~Y~eaiKcy~nAl~~~~dN~qilrDlslLQ~QmRd~~~~~~tr~~LLql~~~~ra~w~~~Avs~~L~g~y~~A 162 (700)
T KOG1156|consen 83 LLQRSDKKYDEAIKCYRNALKIEKDNLQILRDLSLLQIQMRDYEGYLETRNQLLQLRPSQRASWIGFAVAQHLLGEYKMA 162 (700)
T ss_pred HHHhhhhhHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHHhhhhHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHhhCCCCCCh------HHHHHHHHHHHHcCCHHHHHHHHHHHHHHhcCCCCCcHHHHHHHHHHHHhcCCHHHH
Q 003563 189 IGILEEYLKVHPSDADL------SVIDLLVAILMENNAYEKTLQHIEHAQIVRFSGKELPLKLKVKAGICYLRLGNMEKA 262 (810)
Q Consensus 189 ~~~~~~~l~~~p~~~~~------~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A 262 (810)
...++...+.....++. ........+....|.+++|.+.+..--.. .-+........+.++.+++++++|
T Consensus 163 ~~il~ef~~t~~~~~s~~~~e~se~~Ly~n~i~~E~g~~q~ale~L~~~e~~----i~Dkla~~e~ka~l~~kl~~lEeA 238 (700)
T KOG1156|consen 163 LEILEEFEKTQNTSPSKEDYEHSELLLYQNQILIEAGSLQKALEHLLDNEKQ----IVDKLAFEETKADLLMKLGQLEEA 238 (700)
T ss_pred HHHHHHHHHhhccCCCHHHHHHHHHHHHHHHHHHHcccHHHHHHHHHhhhhH----HHHHHHHhhhHHHHHHHHhhHHhH
Confidence 99988877665322221 23445566777889989998887765433 233445556778899999999999
Q ss_pred HHHHHHhhccCCchhHhHHHHHHHHHHHcCCcHHHH-HHHHHHHhccCCC------------------------------
Q 003563 263 EILFADLQWKNAIDHADLITEVADTLMSLGHSNSAL-KYYHFLETNAGTD------------------------------ 311 (810)
Q Consensus 263 ~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~-~~~~~~~~~~~~~------------------------------ 311 (810)
...+..++..+|. +...+..+-.++..-.+--+++ ..|....+. .|.
T Consensus 239 ~~~y~~Ll~rnPd-n~~Yy~~l~~~lgk~~d~~~~lk~ly~~ls~~-y~r~e~p~Rlplsvl~~eel~~~vdkyL~~~l~ 316 (700)
T KOG1156|consen 239 VKVYRRLLERNPD-NLDYYEGLEKALGKIKDMLEALKALYAILSEK-YPRHECPRRLPLSVLNGEELKEIVDKYLRPLLS 316 (700)
T ss_pred HHHHHHHHhhCch-hHHHHHHHHHHHHHHhhhHHHHHHHHHHHhhc-CcccccchhccHHHhCcchhHHHHHHHHHHHhh
Confidence 9999999999985 6666666655554333333344 444433222 110
Q ss_pred --CHHHHHHHHHHHHHccCHHHHHHHHHHHH-------hhc------------CCCH--HHHHHHHHHHHHcCCHHHHHH
Q 003563 312 --NGYLYLKLAECYLSLKERAHAIMFFYKAL-------DRF------------EDNI--DARLTLASLLLEEAKEEEAIT 368 (810)
Q Consensus 312 --~~~~~~~la~~~~~~g~~~~A~~~~~~al-------~~~------------p~~~--~~~~~la~~~~~~g~~~~A~~ 368 (810)
-|.+...+-..| .++... ...++.+ .-. |... ...+.++.-+-..|+++.|..
T Consensus 317 Kg~p~vf~dl~SLy---k~p~k~-~~le~Lvt~y~~~L~~~~~f~~~D~~~~E~PttllWt~y~laqh~D~~g~~~~A~~ 392 (700)
T KOG1156|consen 317 KGVPSVFKDLRSLY---KDPEKV-AFLEKLVTSYQHSLSGTGMFNFLDDGKQEPPTTLLWTLYFLAQHYDKLGDYEVALE 392 (700)
T ss_pred cCCCchhhhhHHHH---hchhHh-HHHHHHHHHHHhhcccccCCCcccccccCCchHHHHHHHHHHHHHHHcccHHHHHH
Confidence 001111111111 111111 1222222 111 2222 233557788888899999999
Q ss_pred hcCCCCCCCcccCCCCCCChhhhHHHHHHHHHHHHHhcCCchhHHhhhhhhhhhhHHHHHH
Q 003563 369 LLSPPKDLDSLDMNSDKSNPWWLNEKIIMKLCHIYRAKGMPEDFVDAIFPLVCESLCVEAL 429 (810)
Q Consensus 369 ~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~~~~~~~ 429 (810)
+++.|++..|.- .+.+..-|+++...|..++|...+..+.+-....+..
T Consensus 393 yId~AIdHTPTl------------iEly~~KaRI~kH~G~l~eAa~~l~ea~elD~aDR~I 441 (700)
T KOG1156|consen 393 YIDLAIDHTPTL------------IELYLVKARIFKHAGLLDEAAAWLDEAQELDTADRAI 441 (700)
T ss_pred HHHHHhccCchH------------HHHHHHHHHHHHhcCChHHHHHHHHHHHhccchhHHH
Confidence 999998888864 3677888889999999999988888776654443333
No 43
>KOG1127 consensus TPR repeat-containing protein [RNA processing and modification]
Probab=99.89 E-value=5.2e-19 Score=187.97 Aligned_cols=355 Identities=13% Similarity=0.033 Sum_probs=199.5
Q ss_pred HHHHHHHHHHHHHhCCCChHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Q 003563 49 FEQAISLLKEVVRLSPNLPETYNTLGLAHSALGNHKSAFDFYVIAAHLSPKDSALWKQLLTFAVQKGDTAQAMYYIRQAI 128 (810)
Q Consensus 49 ~~~A~~~~~~~l~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al 128 (810)
...|...|-++++++|..+.++..||.+|...-+...|..+|.+|.+++|.+..++...+..|.+..+++.|....-.+-
T Consensus 474 ~~~al~ali~alrld~~~apaf~~LG~iYrd~~Dm~RA~kCf~KAFeLDatdaeaaaa~adtyae~~~we~a~~I~l~~~ 553 (1238)
T KOG1127|consen 474 SALALHALIRALRLDVSLAPAFAFLGQIYRDSDDMKRAKKCFDKAFELDATDAEAAAASADTYAEESTWEEAFEICLRAA 553 (1238)
T ss_pred HHHHHHHHHHHHhcccchhHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCchhhhhHHHHHHHhhccccHHHHHHHHHHHh
Confidence 44455555555555666666666666666655555566666666666666666666666666666666666655544444
Q ss_pred HcCCCC--HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHhhCCCCCChH
Q 003563 129 RAEPKD--ISLRIHLASFYVEIGDYEKAAESYEQIQKLFPDNVDATKTGAQLFLKCGQTARSIGILEEYLKVHPSDADLS 206 (810)
Q Consensus 129 ~~~p~~--~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~ 206 (810)
+..|.. ...|..+|..|...++..+|+..|+.++..+|.+...|..+|.+|...|++..|++.|.++..++|.+.-
T Consensus 554 qka~a~~~k~nW~~rG~yyLea~n~h~aV~~fQsALR~dPkD~n~W~gLGeAY~~sGry~~AlKvF~kAs~LrP~s~y-- 631 (1238)
T KOG1127|consen 554 QKAPAFACKENWVQRGPYYLEAHNLHGAVCEFQSALRTDPKDYNLWLGLGEAYPESGRYSHALKVFTKASLLRPLSKY-- 631 (1238)
T ss_pred hhchHHHHHhhhhhccccccCccchhhHHHHHHHHhcCCchhHHHHHHHHHHHHhcCceehHHHhhhhhHhcCcHhHH--
Confidence 444422 2234446666666666666666666666666666666666666666666666666666666666665542
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHhcC---CCCCcHHHHHHHHHHHHhcCCHHHHHHHHHHhhccCC-------ch
Q 003563 207 VIDLLVAILMENNAYEKTLQHIEHAQIVRFS---GKELPLKLKVKAGICYLRLGNMEKAEILFADLQWKNA-------ID 276 (810)
Q Consensus 207 ~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~---~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~-------~~ 276 (810)
..+..+.+....|+|.+|+..+...+..... ......+.+...+..+.-.|=..+|...+++.+.... .+
T Consensus 632 ~~fk~A~~ecd~GkYkeald~l~~ii~~~s~e~~~q~gLaE~~ir~akd~~~~gf~~kavd~~eksie~f~~~l~h~~~~ 711 (1238)
T KOG1127|consen 632 GRFKEAVMECDNGKYKEALDALGLIIYAFSLERTGQNGLAESVIRDAKDSAITGFQKKAVDFFEKSIESFIVSLIHSLQS 711 (1238)
T ss_pred HHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHhhhh
Confidence 4455666666666666666666665554211 1112233444444444455555556666665432110 01
Q ss_pred hHhHHHHHHHHHHH---cC--------------------Cc---H---HHHHHHHHHHhccCCCCHHHHHHHHHHHHH--
Q 003563 277 HADLITEVADTLMS---LG--------------------HS---N---SALKYYHFLETNAGTDNGYLYLKLAECYLS-- 325 (810)
Q Consensus 277 ~~~~~~~la~~~~~---~~--------------------~~---~---~A~~~~~~~~~~~~~~~~~~~~~la~~~~~-- 325 (810)
+.-.|..++.++.- .. .. + -|.+++-..+. ....+..|+++|.-|..
T Consensus 712 ~~~~Wi~asdac~~f~q~e~~~vn~h~l~il~~q~e~~~~l~~~d~l~Lg~~c~~~hls--l~~~~~~WyNLGinylr~f 789 (1238)
T KOG1127|consen 712 DRLQWIVASDACYIFSQEEPSIVNMHYLIILSKQLEKTGALKKNDLLFLGYECGIAHLS--LAIHMYPWYNLGINYLRYF 789 (1238)
T ss_pred hHHHHHHHhHHHHHHHHhcccchHHHHHHHHHHHHHhcccCcchhHHHHHHHHhhHHHH--HhhccchHHHHhHHHHHHH
Confidence 11122222222110 00 00 0 01111111111 11235567777766655
Q ss_pred ------ccCHHHHHHHHHHHHhhcCCCHHHHHHHHHHHHHcCCHHHHHHhcCCCCCCCcccCCCCCCChhhhHHHHHHHH
Q 003563 326 ------LKERAHAIMFFYKALDRFEDNIDARLTLASLLLEEAKEEEAITLLSPPKDLDSLDMNSDKSNPWWLNEKIIMKL 399 (810)
Q Consensus 326 ------~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~l 399 (810)
+.+...|+.++.+++++..++...|..||.+ ...|++.-|...|-++....|.... .+.++
T Consensus 790 ~~l~et~~~~~~Ai~c~KkaV~L~ann~~~WnaLGVl-sg~gnva~aQHCfIks~~sep~~~~------------~W~Nl 856 (1238)
T KOG1127|consen 790 LLLGETMKDACTAIRCCKKAVSLCANNEGLWNALGVL-SGIGNVACAQHCFIKSRFSEPTCHC------------QWLNL 856 (1238)
T ss_pred HHcCCcchhHHHHHHHHHHHHHHhhccHHHHHHHHHh-hccchhhhhhhhhhhhhhccccchh------------heecc
Confidence 1233467778888888887777777777777 5557777777777777777776542 55777
Q ss_pred HHHHHhcCCchhHHhhhhhhh
Q 003563 400 CHIYRAKGMPEDFVDAIFPLV 420 (810)
Q Consensus 400 a~~~~~~g~~~~A~~~~~~~l 420 (810)
|.++.+..+++-|...+.++.
T Consensus 857 gvL~l~n~d~E~A~~af~~~q 877 (1238)
T KOG1127|consen 857 GVLVLENQDFEHAEPAFSSVQ 877 (1238)
T ss_pred ceeEEecccHHHhhHHHHhhh
Confidence 777777777777776666544
No 44
>KOG0624 consensus dsRNA-activated protein kinase inhibitor P58, contains TPR and DnaJ domains [Defense mechanisms]
Probab=99.89 E-value=6.7e-21 Score=178.95 Aligned_cols=379 Identities=18% Similarity=0.201 Sum_probs=281.2
Q ss_pred CCCChHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHHHHHHHH
Q 003563 63 SPNLPETYNTLGLAHSALGNHKSAFDFYVIAAHLSPKDSALWKQLLTFAVQKGDTAQAMYYIRQAIRAEPKDISLRIHLA 142 (810)
Q Consensus 63 ~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la 142 (810)
+|.+.+-++.+|.-++..|++..|+..|-.|++.+|++..+++..|.+|+.+|+..-|+.-+.+++++.|+...+....|
T Consensus 34 ~~advekhlElGk~lla~~Q~sDALt~yHaAve~dp~~Y~aifrRaT~yLAmGksk~al~Dl~rVlelKpDF~~ARiQRg 113 (504)
T KOG0624|consen 34 SPADVEKHLELGKELLARGQLSDALTHYHAAVEGDPNNYQAIFRRATVYLAMGKSKAALQDLSRVLELKPDFMAARIQRG 113 (504)
T ss_pred CHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHcCCchhHHHHHHHHHHHhhhcCCccchhhHHHHHhcCccHHHHHHHhc
Confidence 45566778889999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHcCCHHHHHHHHHHHHHhCCCCH---HHHH------------HHHHHHHHcCChHHHHHHHHHHHhhCCCCCChHH
Q 003563 143 SFYVEIGDYEKAAESYEQIQKLFPDNV---DATK------------TGAQLFLKCGQTARSIGILEEYLKVHPSDADLSV 207 (810)
Q Consensus 143 ~~~~~~g~~~~A~~~~~~~l~~~p~~~---~~~~------------~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~ 207 (810)
.++.++|++++|..-|..+++.+|++. ++.. .....+...|+...|++....++++.|-+.. .
T Consensus 114 ~vllK~Gele~A~~DF~~vl~~~~s~~~~~eaqskl~~~~e~~~l~~ql~s~~~~GD~~~ai~~i~~llEi~~Wda~--l 191 (504)
T KOG0624|consen 114 VVLLKQGELEQAEADFDQVLQHEPSNGLVLEAQSKLALIQEHWVLVQQLKSASGSGDCQNAIEMITHLLEIQPWDAS--L 191 (504)
T ss_pred hhhhhcccHHHHHHHHHHHHhcCCCcchhHHHHHHHHhHHHHHHHHHHHHHHhcCCchhhHHHHHHHHHhcCcchhH--H
Confidence 999999999999999999999988653 2222 2223344556666777777777776665544 5
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHHhcCCCCCcHHHHHHHHHHHHhcCCHHHHHHHHHHhhccCCchhHhHHHHHHHH
Q 003563 208 IDLLVAILMENNAYEKTLQHIEHAQIVRFSGKELPLKLKVKAGICYLRLGNMEKAEILFADLQWKNAIDHADLITEVADT 287 (810)
Q Consensus 208 ~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~la~~ 287 (810)
+...+.+|...|++..|+.-++.+.++ ..++.+..+.++.+++..|+.+.++...++++..+|. ....+
T Consensus 192 ~~~Rakc~i~~~e~k~AI~Dlk~askL----s~DnTe~~ykis~L~Y~vgd~~~sL~~iRECLKldpd-HK~Cf------ 260 (504)
T KOG0624|consen 192 RQARAKCYIAEGEPKKAIHDLKQASKL----SQDNTEGHYKISQLLYTVGDAENSLKEIRECLKLDPD-HKLCF------ 260 (504)
T ss_pred HHHHHHHHHhcCcHHHHHHHHHHHHhc----cccchHHHHHHHHHHHhhhhHHHHHHHHHHHHccCcc-hhhHH------
Confidence 556667777777777777776666666 5556666666677777777777777666666666653 22111
Q ss_pred HHHcCCcHHHHHHHHHHHhccCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHhhcCCCHHH----HHHHHHHHHHcCCH
Q 003563 288 LMSLGHSNSALKYYHFLETNAGTDNGYLYLKLAECYLSLKERAHAIMFFYKALDRFEDNIDA----RLTLASLLLEEAKE 363 (810)
Q Consensus 288 ~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~----~~~la~~~~~~g~~ 363 (810)
..|.++.+. .-...-+.-....++|.++++..+++++.+|..+.+ ...+..++...|++
T Consensus 261 -----------~~YKklkKv------~K~les~e~~ie~~~~t~cle~ge~vlk~ep~~~~ir~~~~r~~c~C~~~d~~~ 323 (504)
T KOG0624|consen 261 -----------PFYKKLKKV------VKSLESAEQAIEEKHWTECLEAGEKVLKNEPEETMIRYNGFRVLCTCYREDEQF 323 (504)
T ss_pred -----------HHHHHHHHH------HHHHHHHHHHHhhhhHHHHHHHHHHHHhcCCcccceeeeeeheeeecccccCCH
Confidence 111111110 000111334456788999999999999999986544 34578889999999
Q ss_pred HHHHHhcCCCCCCCcccCCCCCCChhhhHHHHHHHHHHHHHhcCCchhHHhhhhhhhhhhHHHHHHHHHhhhhhccchhh
Q 003563 364 EEAITLLSPPKDLDSLDMNSDKSNPWWLNEKIIMKLCHIYRAKGMPEDFVDAIFPLVCESLCVEALRQKVKVKRRLTKGI 443 (810)
Q Consensus 364 ~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~ 443 (810)
.+|+....++++.+|++. +++..++.+|....+|++|+..|+++.+-.......+......+++...+
T Consensus 324 ~eAiqqC~evL~~d~~dv------------~~l~dRAeA~l~dE~YD~AI~dye~A~e~n~sn~~~reGle~Akrlkkqs 391 (504)
T KOG0624|consen 324 GEAIQQCKEVLDIDPDDV------------QVLCDRAEAYLGDEMYDDAIHDYEKALELNESNTRAREGLERAKRLKKQS 391 (504)
T ss_pred HHHHHHHHHHHhcCchHH------------HHHHHHHHHHhhhHHHHHHHHHHHHHHhcCcccHHHHHHHHHHHHHHHHh
Confidence 999999999999999864 69999999999999999999999999887666555555554444443221
Q ss_pred HHHHHhHhcCCCCCccccCCCCCCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccccCCCCCCchh
Q 003563 444 LQQRTKIYNNLPTDSILCGIRPAAPKSELLVAARARKKIQKKEALKEEKKALAKAAGVEWHSDDTDDES 512 (810)
Q Consensus 444 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 512 (810)
...+.-.+.|++...++.++.+++|.. +..|+++...++.
T Consensus 392 ---------~kRDYYKILGVkRnAsKqEI~KAYRKl--------------------AqkWHPDNFqdEe 431 (504)
T KOG0624|consen 392 ---------GKRDYYKILGVKRNASKQEITKAYRKL--------------------AQKWHPDNFQDEE 431 (504)
T ss_pred ---------ccchHHHHhhhcccccHHHHHHHHHHH--------------------HHhcCCccccCHH
Confidence 223445578888899999999988754 5679988666555
No 45
>KOG1173 consensus Anaphase-promoting complex (APC), Cdc16 subunit [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=99.88 E-value=3.6e-20 Score=186.09 Aligned_cols=294 Identities=16% Similarity=0.171 Sum_probs=259.3
Q ss_pred CCHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCCCHHHHHHHH
Q 003563 29 LSPGVTKMLGEASLQYAYGNFEQAISLLKEVVRLSPNLPETYNTLGLAHSALGNHKSAFDFYVIAAHLSPKDSALWKQLL 108 (810)
Q Consensus 29 ~~~~~~~~l~~a~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~p~~~~~~~~la 108 (810)
+......+..+|..++..++|.+..++++..++.+|-++..+-..--++...|+..+-...-.+.+...|+.+..|+.+|
T Consensus 240 l~~~~dll~~~ad~~y~~c~f~~c~kit~~lle~dpfh~~~~~~~ia~l~el~~~n~Lf~lsh~LV~~yP~~a~sW~aVg 319 (611)
T KOG1173|consen 240 LAENLDLLAEKADRLYYGCRFKECLKITEELLEKDPFHLPCLPLHIACLYELGKSNKLFLLSHKLVDLYPSKALSWFAVG 319 (611)
T ss_pred hhhcHHHHHHHHHHHHHcChHHHHHHHhHHHHhhCCCCcchHHHHHHHHHHhcccchHHHHHHHHHHhCCCCCcchhhHH
Confidence 34456667889999999999999999999999999998887766555999999988888888888999999999999999
Q ss_pred HHHHHcCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCChHHH
Q 003563 109 TFAVQKGDTAQAMYYIRQAIRAEPKDISLRIHLASFYVEIGDYEKAAESYEQIQKLFPDNVDATKTGAQLFLKCGQTARS 188 (810)
Q Consensus 109 ~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A 188 (810)
..|...|++.+|.++|.++..++|....+|...|..+...|..++|+..|..+-++.|........+|.-|...++++-|
T Consensus 320 ~YYl~i~k~seARry~SKat~lD~~fgpaWl~fghsfa~e~EhdQAmaaY~tAarl~~G~hlP~LYlgmey~~t~n~kLA 399 (611)
T KOG1173|consen 320 CYYLMIGKYSEARRYFSKATTLDPTFGPAWLAFGHSFAGEGEHDQAMAAYFTAARLMPGCHLPSLYLGMEYMRTNNLKLA 399 (611)
T ss_pred HHHHHhcCcHHHHHHHHHHhhcCccccHHHHHHhHHhhhcchHHHHHHHHHHHHHhccCCcchHHHHHHHHHHhccHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999888888899999999999999
Q ss_pred HHHHHHHHhhCCCCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhcCCCCCcHHHHHHHHHHHHhcCCHHHHHHHHHH
Q 003563 189 IGILEEYLKVHPSDADLSVIDLLVAILMENNAYEKTLQHIEHAQIVRFSGKELPLKLKVKAGICYLRLGNMEKAEILFAD 268 (810)
Q Consensus 189 ~~~~~~~l~~~p~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~ 268 (810)
...|.+++.+.|.++- ++..+|.+.+..+.|.+|..+|+.++...+ .
T Consensus 400 e~Ff~~A~ai~P~Dpl--v~~Elgvvay~~~~y~~A~~~f~~~l~~ik-------------------------------~ 446 (611)
T KOG1173|consen 400 EKFFKQALAIAPSDPL--VLHELGVVAYTYEEYPEALKYFQKALEVIK-------------------------------S 446 (611)
T ss_pred HHHHHHHHhcCCCcch--hhhhhhheeehHhhhHHHHHHHHHHHHHhh-------------------------------h
Confidence 9999999999999986 788999999999999999999998874411 1
Q ss_pred hhccCCchhHhHHHHHHHHHHHcCCcHHHHHHHHHHHhccCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHhhcCCCHH
Q 003563 269 LQWKNAIDHADLITEVADTLMSLGHSNSALKYYHFLETNAGTDNGYLYLKLAECYLSLKERAHAIMFFYKALDRFEDNID 348 (810)
Q Consensus 269 ~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~ 348 (810)
+..+.+ .-...+.++|.++.+.+.+++|+..|++++.. .|.++.++..+|.+|..+|+++.|+++|.+++.+.|++.-
T Consensus 447 ~~~e~~-~w~p~~~NLGH~~Rkl~~~~eAI~~~q~aL~l-~~k~~~~~asig~iy~llgnld~Aid~fhKaL~l~p~n~~ 524 (611)
T KOG1173|consen 447 VLNEKI-FWEPTLNNLGHAYRKLNKYEEAIDYYQKALLL-SPKDASTHASIGYIYHLLGNLDKAIDHFHKALALKPDNIF 524 (611)
T ss_pred cccccc-chhHHHHhHHHHHHHHhhHHHHHHHHHHHHHc-CCCchhHHHHHHHHHHHhcChHHHHHHHHHHHhcCCccHH
Confidence 111112 24456889999999999999999999999987 8999999999999999999999999999999999999987
Q ss_pred HHHHHHHHH
Q 003563 349 ARLTLASLL 357 (810)
Q Consensus 349 ~~~~la~~~ 357 (810)
+.-.|+.+.
T Consensus 525 ~~~lL~~ai 533 (611)
T KOG1173|consen 525 ISELLKLAI 533 (611)
T ss_pred HHHHHHHHH
Confidence 776666443
No 46
>KOG1173 consensus Anaphase-promoting complex (APC), Cdc16 subunit [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=99.88 E-value=2.3e-20 Score=187.46 Aligned_cols=341 Identities=13% Similarity=0.077 Sum_probs=289.1
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHcC-----------------ChHHHHHHHHHHH--
Q 003563 34 TKMLGEASLQYAYGNFEQAISLLKEVVRLSPNLPETYNTLGLAHSALG-----------------NHKSAFDFYVIAA-- 94 (810)
Q Consensus 34 ~~~l~~a~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~l~~~~~~~g-----------------~~~~A~~~~~~a~-- 94 (810)
.-.+.+|..+....++++|...|.+++..++.+.++...+-....-.- ...+-++.+-++.
T Consensus 142 sic~lRgk~y~al~n~~~ar~~Y~~Al~~D~~c~Ea~~~lvs~~mlt~~Ee~~ll~~l~~a~~~~ed~e~l~~lyel~~~ 221 (611)
T KOG1173|consen 142 SICYLRGKVYVALDNREEARDKYKEALLADAKCFEAFEKLVSAHMLTAQEEFELLESLDLAMLTKEDVERLEILYELKLC 221 (611)
T ss_pred ceeeeeeehhhhhccHHHHHHHHHHHHhcchhhHHHHHHHHHHHhcchhHHHHHHhcccHHhhhhhHHHHHHHHHHhhhh
Confidence 344678889999999999999999999999998887665544332211 1111111111111
Q ss_pred --------hcC--------CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHcCCHHHHHHHH
Q 003563 95 --------HLS--------PKDSALWKQLLTFAVQKGDTAQAMYYIRQAIRAEPKDISLRIHLASFYVEIGDYEKAAESY 158 (810)
Q Consensus 95 --------~~~--------p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~ 158 (810)
... .++.+.....+..++..+++.+-.+..+..++.+|-+...+-....++...|+..+-...-
T Consensus 222 k~~n~~~~~r~~~~sl~~l~~~~dll~~~ad~~y~~c~f~~c~kit~~lle~dpfh~~~~~~~ia~l~el~~~n~Lf~ls 301 (611)
T KOG1173|consen 222 KNRNEESLTRNEDESLIGLAENLDLLAEKADRLYYGCRFKECLKITEELLEKDPFHLPCLPLHIACLYELGKSNKLFLLS 301 (611)
T ss_pred hhccccccccCchhhhhhhhhcHHHHHHHHHHHHHcChHHHHHHHhHHHHhhCCCCcchHHHHHHHHHHhcccchHHHHH
Confidence 001 2356778888999999999999999999999999988877655555999999999988888
Q ss_pred HHHHHhCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHhhCCCCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhcCC
Q 003563 159 EQIQKLFPDNVDATKTGAQLFLKCGQTARSIGILEEYLKVHPSDADLSVIDLLVAILMENNAYEKTLQHIEHAQIVRFSG 238 (810)
Q Consensus 159 ~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~ 238 (810)
.++.+..|+.+-.|+.+|..|...|++.+|..+|.++..++|.... +|..+|..+...|..++|+..|..+.+.++
T Consensus 302 h~LV~~yP~~a~sW~aVg~YYl~i~k~seARry~SKat~lD~~fgp--aWl~fghsfa~e~EhdQAmaaY~tAarl~~-- 377 (611)
T KOG1173|consen 302 HKLVDLYPSKALSWFAVGCYYLMIGKYSEARRYFSKATTLDPTFGP--AWLAFGHSFAGEGEHDQAMAAYFTAARLMP-- 377 (611)
T ss_pred HHHHHhCCCCCcchhhHHHHHHHhcCcHHHHHHHHHHhhcCccccH--HHHHHhHHhhhcchHHHHHHHHHHHHHhcc--
Confidence 9999999999999999999999999999999999999999999876 899999999999999999999999999954
Q ss_pred CCCcHHHHHHHHHHHHhcCCHHHHHHHHHHhhccCCchhHhHHHHHHHHHHHcCCcHHHHHHHHHHHhcc------CCCC
Q 003563 239 KELPLKLKVKAGICYLRLGNMEKAEILFADLQWKNAIDHADLITEVADTLMSLGHSNSALKYYHFLETNA------GTDN 312 (810)
Q Consensus 239 ~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~------~~~~ 312 (810)
....-...+|.-|...++++-|..+|.+++...|. ++-++..+|.+.+..+.|.+|..+|+.++... .+..
T Consensus 378 --G~hlP~LYlgmey~~t~n~kLAe~Ff~~A~ai~P~-Dplv~~Elgvvay~~~~y~~A~~~f~~~l~~ik~~~~e~~~w 454 (611)
T KOG1173|consen 378 --GCHLPSLYLGMEYMRTNNLKLAEKFFKQALAIAPS-DPLVLHELGVVAYTYEEYPEALKYFQKALEVIKSVLNEKIFW 454 (611)
T ss_pred --CCcchHHHHHHHHHHhccHHHHHHHHHHHHhcCCC-cchhhhhhhheeehHhhhHHHHHHHHHHHHHhhhccccccch
Confidence 33334567899999999999999999999999986 99999999999999999999999999877331 1223
Q ss_pred HHHHHHHHHHHHHccCHHHHHHHHHHHHhhcCCCHHHHHHHHHHHHHcCCHHHHHHhcCCCCCCCcccC
Q 003563 313 GYLYLKLAECYLSLKERAHAIMFFYKALDRFEDNIDARLTLASLLLEEAKEEEAITLLSPPKDLDSLDM 381 (810)
Q Consensus 313 ~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~ 381 (810)
...+.++|.++.+++.+++|+.+|++++.+.|.++.++..+|.+|..+|+++.|++.|.+++-+.|++.
T Consensus 455 ~p~~~NLGH~~Rkl~~~~eAI~~~q~aL~l~~k~~~~~asig~iy~llgnld~Aid~fhKaL~l~p~n~ 523 (611)
T KOG1173|consen 455 EPTLNNLGHAYRKLNKYEEAIDYYQKALLLSPKDASTHASIGYIYHLLGNLDKAIDHFHKALALKPDNI 523 (611)
T ss_pred hHHHHhHHHHHHHHhhHHHHHHHHHHHHHcCCCchhHHHHHHHHHHHhcChHHHHHHHHHHHhcCCccH
Confidence 456899999999999999999999999999999999999999999999999999999999999999873
No 47
>KOG1127 consensus TPR repeat-containing protein [RNA processing and modification]
Probab=99.88 E-value=4.4e-18 Score=181.07 Aligned_cols=343 Identities=15% Similarity=0.092 Sum_probs=245.7
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCCC--HHHHHHHHHHHH
Q 003563 35 KMLGEASLQYAYGNFEQAISLLKEVVRLSPNLPETYNTLGLAHSALGNHKSAFDFYVIAAHLSPKD--SALWKQLLTFAV 112 (810)
Q Consensus 35 ~~l~~a~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~p~~--~~~~~~la~~~~ 112 (810)
.+-..|..|..--|...|..+|+++.++||.+.+++-..+..|....+++.|......+-+..|.. ...|..+|-.|.
T Consensus 494 af~~LG~iYrd~~Dm~RA~kCf~KAFeLDatdaeaaaa~adtyae~~~we~a~~I~l~~~qka~a~~~k~nW~~rG~yyL 573 (1238)
T KOG1127|consen 494 AFAFLGQIYRDSDDMKRAKKCFDKAFELDATDAEAAAASADTYAEESTWEEAFEICLRAAQKAPAFACKENWVQRGPYYL 573 (1238)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhcCCchhhhhHHHHHHHhhccccHHHHHHHHHHHhhhchHHHHHhhhhhcccccc
Confidence 344567777777789999999999999999999999999999999999999999988877777754 356778999999
Q ss_pred HcCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCChHHHHHHH
Q 003563 113 QKGDTAQAMYYIRQAIRAEPKDISLRIHLASFYVEIGDYEKAAESYEQIQKLFPDNVDATKTGAQLFLKCGQTARSIGIL 192 (810)
Q Consensus 113 ~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~~ 192 (810)
+.+++..|+..|+.++..+|.+...|..+|.+|...|.+..|++.|.++..++|.+.-+.+..+.+....|.|.+|+..+
T Consensus 574 ea~n~h~aV~~fQsALR~dPkD~n~W~gLGeAY~~sGry~~AlKvF~kAs~LrP~s~y~~fk~A~~ecd~GkYkeald~l 653 (1238)
T KOG1127|consen 574 EAHNLHGAVCEFQSALRTDPKDYNLWLGLGEAYPESGRYSHALKVFTKASLLRPLSKYGRFKEAVMECDNGKYKEALDAL 653 (1238)
T ss_pred CccchhhHHHHHHHHhcCCchhHHHHHHHHHHHHhcCceehHHHhhhhhHhcCcHhHHHHHHHHHHHHHhhhHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHhhCCCCCC-----hHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhcCC---C-CCcHHHHHHHHH------------
Q 003563 193 EEYLKVHPSDAD-----LSVIDLLVAILMENNAYEKTLQHIEHAQIVRFSG---K-ELPLKLKVKAGI------------ 251 (810)
Q Consensus 193 ~~~l~~~p~~~~-----~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~---~-~~~~~~~~~la~------------ 251 (810)
...+........ ...+..++..+...|-..+|...+++.++.+... . ......+..++.
T Consensus 654 ~~ii~~~s~e~~~q~gLaE~~ir~akd~~~~gf~~kavd~~eksie~f~~~l~h~~~~~~~~Wi~asdac~~f~q~e~~~ 733 (1238)
T KOG1127|consen 654 GLIIYAFSLERTGQNGLAESVIRDAKDSAITGFQKKAVDFFEKSIESFIVSLIHSLQSDRLQWIVASDACYIFSQEEPSI 733 (1238)
T ss_pred HHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHhhhhhHHHHHHHhHHHHHHHHhcccc
Confidence 998876443222 2344455555556676777777777765532100 0 000000111111
Q ss_pred -------HHH----hcCCH---H---HHHHHHHHhhccCCchhHhHHHHHHHHHHH--------cCCcHHHHHHHHHHHh
Q 003563 252 -------CYL----RLGNM---E---KAEILFADLQWKNAIDHADLITEVADTLMS--------LGHSNSALKYYHFLET 306 (810)
Q Consensus 252 -------~~~----~~g~~---~---~A~~~~~~~~~~~~~~~~~~~~~la~~~~~--------~~~~~~A~~~~~~~~~ 306 (810)
++. ..+.. + -+.+++-..+... ..+..|+++|..|.. ..+-..|+.++.++++
T Consensus 734 vn~h~l~il~~q~e~~~~l~~~d~l~Lg~~c~~~hlsl~--~~~~~WyNLGinylr~f~~l~et~~~~~~Ai~c~KkaV~ 811 (1238)
T KOG1127|consen 734 VNMHYLIILSKQLEKTGALKKNDLLFLGYECGIAHLSLA--IHMYPWYNLGINYLRYFLLLGETMKDACTAIRCCKKAVS 811 (1238)
T ss_pred hHHHHHHHHHHHHHhcccCcchhHHHHHHHHhhHHHHHh--hccchHHHHhHHHHHHHHHcCCcchhHHHHHHHHHHHHH
Confidence 010 01111 1 1122222211111 235556666666654 1122467777777776
Q ss_pred ccCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHhhcCCCHHHHHHHHHHHHHcCCHHHHHHhcCCCCCCCcccC
Q 003563 307 NAGTDNGYLYLKLAECYLSLKERAHAIMFFYKALDRFEDNIDARLTLASLLLEEAKEEEAITLLSPPKDLDSLDM 381 (810)
Q Consensus 307 ~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~ 381 (810)
. ..++...|..+|.+ ...|++.-|..+|-+.+..+|.+...|.++|.++.+..+++-|...+.++..++|.+.
T Consensus 812 L-~ann~~~WnaLGVl-sg~gnva~aQHCfIks~~sep~~~~~W~NlgvL~l~n~d~E~A~~af~~~qSLdP~nl 884 (1238)
T KOG1127|consen 812 L-CANNEGLWNALGVL-SGIGNVACAQHCFIKSRFSEPTCHCQWLNLGVLVLENQDFEHAEPAFSSVQSLDPLNL 884 (1238)
T ss_pred H-hhccHHHHHHHHHh-hccchhhhhhhhhhhhhhccccchhheeccceeEEecccHHHhhHHHHhhhhcCchhh
Confidence 5 66667777777766 4456777777777777777777777777777777777777777777777777777653
No 48
>TIGR00540 hemY_coli hemY protein. This is an uncharacterized protein encoded next to a heme-biosynthetic enzyme in two gamma division proteobacteria (E. coli and H. influenzae). It is known in no other species. The gene symbol hemY is unfortunate in that an unrelated protein, protoporphyrinogen oxidase, is designated as HemG in E. coli but as HemY in Bacillus subtilis.
Probab=99.87 E-value=1.6e-19 Score=192.57 Aligned_cols=303 Identities=14% Similarity=0.075 Sum_probs=214.5
Q ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCCCH-HHHHHHHHH
Q 003563 32 GVTKMLGEASLQYAYGNFEQAISLLKEVVRLSPNLPETYNTLGLAHSALGNHKSAFDFYVIAAHLSPKDS-ALWKQLLTF 110 (810)
Q Consensus 32 ~~~~~l~~a~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~p~~~-~~~~~la~~ 110 (810)
.....+.+|...+..|+++.|.+.+.++.+..|+....+...|.++..+|+++.|..++.++.+..|++. .+....+.+
T Consensus 83 k~~~~~~~glla~~~g~~~~A~~~l~~~~~~~~~~~~~~llaA~aa~~~g~~~~A~~~l~~a~~~~p~~~l~~~~~~a~l 162 (409)
T TIGR00540 83 KAQKQTEEALLKLAEGDYAKAEKLIAKNADHAAEPVLNLIKAAEAAQQRGDEARANQHLEEAAELAGNDNILVEIARTRI 162 (409)
T ss_pred HHHHHHHHHHHHHhCCCHHHHHHHHHHHhhcCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCcCchHHHHHHHHH
Confidence 3445678899999999999999999999998888888888889999999999999999999998888875 466667999
Q ss_pred HHHcCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHH----HHHHHHHHcCChH
Q 003563 111 AVQKGDTAQAMYYIRQAIRAEPKDISLRIHLASFYVEIGDYEKAAESYEQIQKLFPDNVDATK----TGAQLFLKCGQTA 186 (810)
Q Consensus 111 ~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~----~la~~~~~~g~~~ 186 (810)
+...|++++|...+++..+..|+++.++..++.++...|++++|.+.+.+..+..+.++.... ....-....+..+
T Consensus 163 ~l~~~~~~~Al~~l~~l~~~~P~~~~~l~ll~~~~~~~~d~~~a~~~l~~l~k~~~~~~~~~~~l~~~a~~~~l~~~~~~ 242 (409)
T TIGR00540 163 LLAQNELHAARHGVDKLLEMAPRHKEVLKLAEEAYIRSGAWQALDDIIDNMAKAGLFDDEEFADLEQKAEIGLLDEAMAD 242 (409)
T ss_pred HHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHhhHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHh
Confidence 999999999999999999999999999999999999999999999999999887554443321 2222223444455
Q ss_pred HHHHHHHHHHhhCCCC--CChHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhcCCCCCcHHH--HHHHHHHHHhcCCHHHH
Q 003563 187 RSIGILEEYLKVHPSD--ADLSVIDLLVAILMENNAYEKTLQHIEHAQIVRFSGKELPLKL--KVKAGICYLRLGNMEKA 262 (810)
Q Consensus 187 ~A~~~~~~~l~~~p~~--~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~--~~~la~~~~~~g~~~~A 262 (810)
++.+.+.++.+..|.. .+..++..++..+...|++++|...++++++..| .+... ...........++.+.+
T Consensus 243 ~~~~~L~~~~~~~p~~~~~~~~l~~~~a~~l~~~g~~~~A~~~l~~~l~~~p----d~~~~~~~~l~~~~~l~~~~~~~~ 318 (409)
T TIGR00540 243 EGIDGLLNWWKNQPRHRRHNIALKIALAEHLIDCDDHDSAQEIIFDGLKKLG----DDRAISLPLCLPIPRLKPEDNEKL 318 (409)
T ss_pred cCHHHHHHHHHHCCHHHhCCHHHHHHHHHHHHHCCChHHHHHHHHHHHhhCC----CcccchhHHHHHhhhcCCCChHHH
Confidence 5566777777777642 1234677888888888888888888888888733 22211 01122222334556666
Q ss_pred HHHHHHhhccCCchhH--hHHHHHHHHHHHcCCcHHHHHHHHH--HHhccCCCCHHHHHHHHHHHHHccCHHHHHHHHHH
Q 003563 263 EILFADLQWKNAIDHA--DLITEVADTLMSLGHSNSALKYYHF--LETNAGTDNGYLYLKLAECYLSLKERAHAIMFFYK 338 (810)
Q Consensus 263 ~~~~~~~~~~~~~~~~--~~~~~la~~~~~~~~~~~A~~~~~~--~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~ 338 (810)
+..+++.++..|. ++ .....+|+++.+.|++++|.++|++ +.+. .| ++..+..+|.++.+.|+.++|.++|++
T Consensus 319 ~~~~e~~lk~~p~-~~~~~ll~sLg~l~~~~~~~~~A~~~le~a~a~~~-~p-~~~~~~~La~ll~~~g~~~~A~~~~~~ 395 (409)
T TIGR00540 319 EKLIEKQAKNVDD-KPKCCINRALGQLLMKHGEFIEAADAFKNVAACKE-QL-DANDLAMAADAFDQAGDKAEAAAMRQD 395 (409)
T ss_pred HHHHHHHHHhCCC-ChhHHHHHHHHHHHHHcccHHHHHHHHHHhHHhhc-CC-CHHHHHHHHHHHHHcCCHHHHHHHHHH
Confidence 6666666655553 55 5556666666666666666666663 3322 23 333344666666666666666666666
Q ss_pred HHh
Q 003563 339 ALD 341 (810)
Q Consensus 339 al~ 341 (810)
++.
T Consensus 396 ~l~ 398 (409)
T TIGR00540 396 SLG 398 (409)
T ss_pred HHH
Confidence 544
No 49
>PF13429 TPR_15: Tetratricopeptide repeat; PDB: 2VQ2_A 2PL2_B.
Probab=99.86 E-value=1.5e-21 Score=198.08 Aligned_cols=263 Identities=21% Similarity=0.229 Sum_probs=111.6
Q ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHc--CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHc
Q 003563 105 KQLLTFAVQKGDTAQAMYYIRQAIRA--EPKDISLRIHLASFYVEIGDYEKAAESYEQIQKLFPDNVDATKTGAQLFLKC 182 (810)
Q Consensus 105 ~~la~~~~~~g~~~~A~~~~~~al~~--~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~ 182 (810)
+.+|.++...|++++|+.++.+.+.. .|+++..|..+|.+....++++.|+..|++++..++.++..+..++.+ ...
T Consensus 12 l~~A~~~~~~~~~~~Al~~L~~~~~~~~~~~~~~~~~~~a~La~~~~~~~~A~~ay~~l~~~~~~~~~~~~~l~~l-~~~ 90 (280)
T PF13429_consen 12 LRLARLLYQRGDYEKALEVLKKAAQKIAPPDDPEYWRLLADLAWSLGDYDEAIEAYEKLLASDKANPQDYERLIQL-LQD 90 (280)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred cccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccc-ccc
Confidence 46688888888888888888655443 377777788888888888888888888888888887777777777777 678
Q ss_pred CChHHHHHHHHHHHhhCCCCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhcCCCCCcHHHHHHHHHHHHhcCCHHHH
Q 003563 183 GQTARSIGILEEYLKVHPSDADLSVIDLLVAILMENNAYEKTLQHIEHAQIVRFSGKELPLKLKVKAGICYLRLGNMEKA 262 (810)
Q Consensus 183 g~~~~A~~~~~~~l~~~p~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A 262 (810)
+++++|+.+++++.+..++ +. .+...+.++...++++++...++++..... .+.+...+..+|.++.+.|+.++|
T Consensus 91 ~~~~~A~~~~~~~~~~~~~-~~--~l~~~l~~~~~~~~~~~~~~~l~~~~~~~~--~~~~~~~~~~~a~~~~~~G~~~~A 165 (280)
T PF13429_consen 91 GDPEEALKLAEKAYERDGD-PR--YLLSALQLYYRLGDYDEAEELLEKLEELPA--APDSARFWLALAEIYEQLGDPDKA 165 (280)
T ss_dssp ------------------------------H-HHHTT-HHHHHHHHHHHHH-T-----T-HHHHHHHHHHHHHCCHHHHH
T ss_pred ccccccccccccccccccc-cc--hhhHHHHHHHHHhHHHHHHHHHHHHHhccC--CCCCHHHHHHHHHHHHHcCCHHHH
Confidence 8888888888887766543 22 455677778888888888888888765411 245667788888888888888888
Q ss_pred HHHHHHhhccCCchhHhHHHHHHHHHHHcCCcHHHHHHHHHHHhccCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHhh
Q 003563 263 EILFADLQWKNAIDHADLITEVADTLMSLGHSNSALKYYHFLETNAGTDNGYLYLKLAECYLSLKERAHAIMFFYKALDR 342 (810)
Q Consensus 263 ~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~ 342 (810)
+..+++++..+|. ++.+...++.++...|+++++...+...... .|.++..+..+|.++..+|++++|+.+|++++..
T Consensus 166 ~~~~~~al~~~P~-~~~~~~~l~~~li~~~~~~~~~~~l~~~~~~-~~~~~~~~~~la~~~~~lg~~~~Al~~~~~~~~~ 243 (280)
T PF13429_consen 166 LRDYRKALELDPD-DPDARNALAWLLIDMGDYDEAREALKRLLKA-APDDPDLWDALAAAYLQLGRYEEALEYLEKALKL 243 (280)
T ss_dssp HHHHHHHHHH-TT--HHHHHHHHHHHCTTCHHHHHHHHHHHHHHH--HTSCCHCHHHHHHHHHHT-HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHcCCC-CHHHHHHHHHHHHHCCChHHHHHHHHHHHHH-CcCHHHHHHHHHHHhccccccccccccccccccc
Confidence 8888888888874 7888888899999999999888888877765 5778888889999999999999999999999999
Q ss_pred cCCCHHHHHHHHHHHHHcCCHHHHHHhcCCCCC
Q 003563 343 FEDNIDARLTLASLLLEEAKEEEAITLLSPPKD 375 (810)
Q Consensus 343 ~p~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~ 375 (810)
+|+++.++..+|.++...|+.++|..+..+++.
T Consensus 244 ~p~d~~~~~~~a~~l~~~g~~~~A~~~~~~~~~ 276 (280)
T PF13429_consen 244 NPDDPLWLLAYADALEQAGRKDEALRLRRQALR 276 (280)
T ss_dssp STT-HHHHHHHHHHHT-----------------
T ss_pred ccccccccccccccccccccccccccccccccc
Confidence 999999999999999999999999998887764
No 50
>KOG0548 consensus Molecular co-chaperone STI1 [Posttranslational modification, protein turnover, chaperones]
Probab=99.85 E-value=7.8e-19 Score=176.14 Aligned_cols=343 Identities=16% Similarity=0.117 Sum_probs=278.6
Q ss_pred HHHHHHHHHHcCChHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHcC
Q 003563 70 YNTLGLAHSALGNHKSAFDFYVIAAHLSPKDSALWKQLLTFAVQKGDTAQAMYYIRQAIRAEPKDISLRIHLASFYVEIG 149 (810)
Q Consensus 70 ~~~l~~~~~~~g~~~~A~~~~~~a~~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g 149 (810)
....|...+..|+++.|+.+|..++.++|.+...+.+...+|..+|+|++|+.--.+.++++|+-+..|..+|..+.-+|
T Consensus 5 ~k~kgnaa~s~~d~~~ai~~~t~ai~l~p~nhvlySnrsaa~a~~~~~~~al~da~k~~~l~p~w~kgy~r~Gaa~~~lg 84 (539)
T KOG0548|consen 5 LKEKGNAAFSSGDFETAIRLFTEAIMLSPTNHVLYSNRSAAYASLGSYEKALKDATKTRRLNPDWAKGYSRKGAALFGLG 84 (539)
T ss_pred HHHHHHhhcccccHHHHHHHHHHHHccCCCccchhcchHHHHHHHhhHHHHHHHHHHHHhcCCchhhHHHHhHHHHHhcc
Confidence 34568888999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCC------------------------hHHHHHHHHHHHhhC------
Q 003563 150 DYEKAAESYEQIQKLFPDNVDATKTGAQLFLKCGQ------------------------TARSIGILEEYLKVH------ 199 (810)
Q Consensus 150 ~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~------------------------~~~A~~~~~~~l~~~------ 199 (810)
+|++|+..|.+.++.+|++......++.++...-. .+.+.......+..+
T Consensus 85 ~~~eA~~ay~~GL~~d~~n~~L~~gl~~a~~~~~~~~~~~~~p~~~~~l~~~p~t~~~~~~~~~~~~l~~~~~~p~~l~~ 164 (539)
T KOG0548|consen 85 DYEEAILAYSEGLEKDPSNKQLKTGLAQAYLEDYAADQLFTKPYFHEKLANLPLTNYSLSDPAYVKILEIIQKNPTSLKL 164 (539)
T ss_pred cHHHHHHHHHHHhhcCCchHHHHHhHHHhhhHHHHhhhhccCcHHHHHhhcChhhhhhhccHHHHHHHHHhhcCcHhhhc
Confidence 99999999999999999999888888877622200 000111111111111
Q ss_pred -----------------------------------CC----CC---------------ChHHHHHHHHHHHHcCCHHHHH
Q 003563 200 -----------------------------------PS----DA---------------DLSVIDLLVAILMENNAYEKTL 225 (810)
Q Consensus 200 -----------------------------------p~----~~---------------~~~~~~~la~~~~~~g~~~~A~ 225 (810)
|. ++ .......+|.......++..|+
T Consensus 165 ~l~d~r~m~a~~~l~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~d~~ee~~~k~~a~~ek~lgnaaykkk~f~~a~ 244 (539)
T KOG0548|consen 165 YLNDPRLMKADGQLKGVDELLFYASGIEILASMAEPCKQEHNGFPIIEDNTEERRVKEKAHKEKELGNAAYKKKDFETAI 244 (539)
T ss_pred ccccHHHHHHHHHHhcCccccccccccccCCCCCCcccccCCCCCccchhHHHHHHHHhhhHHHHHHHHHHHhhhHHHHH
Confidence 10 00 0122447888889999999999
Q ss_pred HHHHHHHHHhcCCCCCcHHHHHHHHHHHHhcCCHHHHHHHHHHhhccCCch------hHhHHHHHHHHHHHcCCcHHHHH
Q 003563 226 QHIEHAQIVRFSGKELPLKLKVKAGICYLRLGNMEKAEILFADLQWKNAID------HADLITEVADTLMSLGHSNSALK 299 (810)
Q Consensus 226 ~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~------~~~~~~~la~~~~~~~~~~~A~~ 299 (810)
+.+..++.+ . .....+.+.+-+++..|.+.+.+.....+++..... .......+|..+.+.++++.|+.
T Consensus 245 q~y~~a~el----~-~~it~~~n~aA~~~e~~~~~~c~~~c~~a~E~gre~rad~klIak~~~r~g~a~~k~~~~~~ai~ 319 (539)
T KOG0548|consen 245 QHYAKALEL----A-TDITYLNNIAAVYLERGKYAECIELCEKAVEVGRELRADYKLIAKALARLGNAYTKREDYEGAIK 319 (539)
T ss_pred HHHHHHHhH----h-hhhHHHHHHHHHHHhccHHHHhhcchHHHHHHhHHHHHHHHHHHHHHHHhhhhhhhHHhHHHHHH
Confidence 999999998 5 666778889999999999999998888876654321 12234456778888999999999
Q ss_pred HHHHHHhcc-------------------------CCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHhhcCCCHHHHHHHH
Q 003563 300 YYHFLETNA-------------------------GTDNGYLYLKLAECYLSLKERAHAIMFFYKALDRFEDNIDARLTLA 354 (810)
Q Consensus 300 ~~~~~~~~~-------------------------~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la 354 (810)
+|.+++... .|....--..-|..++..|+|..|+..|.+++..+|+++..+.+.|
T Consensus 320 ~~~kaLte~Rt~~~ls~lk~~Ek~~k~~e~~a~~~pe~A~e~r~kGne~Fk~gdy~~Av~~YteAIkr~P~Da~lYsNRA 399 (539)
T KOG0548|consen 320 YYQKALTEHRTPDLLSKLKEAEKALKEAERKAYINPEKAEEEREKGNEAFKKGDYPEAVKHYTEAIKRDPEDARLYSNRA 399 (539)
T ss_pred HHHHHhhhhcCHHHHHHHHHHHHHHHHHHHHHhhChhHHHHHHHHHHHHHhccCHHHHHHHHHHHHhcCCchhHHHHHHH
Confidence 999876541 1222333445688999999999999999999999999999999999
Q ss_pred HHHHHcCCHHHHHHhcCCCCCCCcccCCCCCCChhhhHHHHHHHHHHHHHhcCCchhHHhhhhhhhhhhHHHHHH
Q 003563 355 SLLLEEAKEEEAITLLSPPKDLDSLDMNSDKSNPWWLNEKIIMKLCHIYRAKGMPEDFVDAIFPLVCESLCVEAL 429 (810)
Q Consensus 355 ~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~~~~~~~ 429 (810)
.+|.++|.+..|+...+.+++++|.. ...+.+-|.++..+.++++|.+.|+..++..+.....
T Consensus 400 ac~~kL~~~~~aL~Da~~~ieL~p~~------------~kgy~RKg~al~~mk~ydkAleay~eale~dp~~~e~ 462 (539)
T KOG0548|consen 400 ACYLKLGEYPEALKDAKKCIELDPNF------------IKAYLRKGAALRAMKEYDKALEAYQEALELDPSNAEA 462 (539)
T ss_pred HHHHHHhhHHHHHHHHHHHHhcCchH------------HHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCchhHHH
Confidence 99999999999999999999999974 4688899999999999999999999999886654333
No 51
>KOG1174 consensus Anaphase-promoting complex (APC), subunit 7 [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=99.85 E-value=4.5e-18 Score=164.05 Aligned_cols=378 Identities=15% Similarity=0.106 Sum_probs=294.6
Q ss_pred CCCHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--------------------CCCChHHHHHHHHHHHHcCChHHHH
Q 003563 28 KLSPGVTKMLGEASLQYAYGNFEQAISLLKEVVRL--------------------SPNLPETYNTLGLAHSALGNHKSAF 87 (810)
Q Consensus 28 ~~~~~~~~~l~~a~~~~~~g~~~~A~~~~~~~l~~--------------------~p~~~~~~~~l~~~~~~~g~~~~A~ 87 (810)
..+.....+...+...+....|..|...|..++++ .|.+.+..+..+.||...++-+.|+
T Consensus 38 ~~~~~yqll~yl~~~~~h~r~yr~a~~~~~~~~~~~~s~~r~s~~~~~s~~~S~~~~~~~e~~r~~aecy~~~~n~~~Ai 117 (564)
T KOG1174|consen 38 TLDVEYQVLLYLLNANYKERNYRAALRHFDEIIHKRRLMMRHKNAVLVAIESSYPEFGDAEQRRRAAECYRQIGNTDMAI 117 (564)
T ss_pred CchHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHhhHhhccccccccccccccCCCcccHHHHHHHHHHHHHHccchHHH
Confidence 33445555556666777777788888888777654 2335566677777877777777777
Q ss_pred HHHHHHHhc----------------------------------------------------------------CCCCHHH
Q 003563 88 DFYVIAAHL----------------------------------------------------------------SPKDSAL 103 (810)
Q Consensus 88 ~~~~~a~~~----------------------------------------------------------------~p~~~~~ 103 (810)
......... .|.++..
T Consensus 118 ~~l~~~p~t~r~p~inlMla~l~~~g~r~~~~vl~ykevvrecp~aL~~i~~ll~l~v~g~e~~S~~m~~~~~~~~~dwl 197 (564)
T KOG1174|consen 118 ETLLQVPPTLRSPRINLMLARLQHHGSRHKEAVLAYKEVIRECPMALQVIEALLELGVNGNEINSLVMHAATVPDHFDWL 197 (564)
T ss_pred HHHhcCCccccchhHHHHHHHHHhccccccHHHHhhhHHHHhcchHHHHHHHHHHHhhcchhhhhhhhhheecCCCccHH
Confidence 665432211 1222222
Q ss_pred HH---HHHHHHHHcCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHH
Q 003563 104 WK---QLLTFAVQKGDTAQAMYYIRQAIRAEPKDISLRIHLASFYVEIGDYEKAAESYEQIQKLFPDNVDATKTGAQLFL 180 (810)
Q Consensus 104 ~~---~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~ 180 (810)
|. .+|.++.....+..+..++-.-....|+|...+..+|.++...|++.+|+..|+++.-++|.+....-..|.++.
T Consensus 198 s~wika~Aq~~~~~hs~a~~t~l~le~~~~lr~NvhLl~~lak~~~~~Gdn~~a~~~Fe~~~~~dpy~i~~MD~Ya~LL~ 277 (564)
T KOG1174|consen 198 SKWIKALAQMFNFKHSDASQTFLMLHDNTTLRCNEHLMMALGKCLYYNGDYFQAEDIFSSTLCANPDNVEAMDLYAVLLG 277 (564)
T ss_pred HHHHHHHHHHHhcccchhhhHHHHHHhhccCCccHHHHHHHhhhhhhhcCchHHHHHHHHHhhCChhhhhhHHHHHHHHH
Confidence 22 223333333334444455555555667778888888888888888888888888888888888888888888888
Q ss_pred HcCChHHHHHHHHHHHhhCCCCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhcCCCCCcHHHHHHHHHHHHhcCCHH
Q 003563 181 KCGQTARSIGILEEYLKVHPSDADLSVIDLLVAILMENNAYEKTLQHIEHAQIVRFSGKELPLKLKVKAGICYLRLGNME 260 (810)
Q Consensus 181 ~~g~~~~A~~~~~~~l~~~p~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~ 260 (810)
..|++++-..+....+........ -|+--+...+..+++..|+.+-++++.. ++.....++..|.++...|+.+
T Consensus 278 ~eg~~e~~~~L~~~Lf~~~~~ta~--~wfV~~~~l~~~K~~~rAL~~~eK~I~~----~~r~~~alilKG~lL~~~~R~~ 351 (564)
T KOG1174|consen 278 QEGGCEQDSALMDYLFAKVKYTAS--HWFVHAQLLYDEKKFERALNFVEKCIDS----EPRNHEALILKGRLLIALERHT 351 (564)
T ss_pred hccCHhhHHHHHHHHHhhhhcchh--hhhhhhhhhhhhhhHHHHHHHHHHHhcc----CcccchHHHhccHHHHhccchH
Confidence 888888877777777776644433 4667778888899999999999999988 7888899999999999999999
Q ss_pred HHHHHHHHhhccCCchhHhHHHHHHHHHHHcCCcHHHHHHHHHHHhccCCCCHHHHHHHH-HHHH-HccCHHHHHHHHHH
Q 003563 261 KAEILFADLQWKNAIDHADLITEVADTLMSLGHSNSALKYYHFLETNAGTDNGYLYLKLA-ECYL-SLKERAHAIMFFYK 338 (810)
Q Consensus 261 ~A~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~la-~~~~-~~g~~~~A~~~~~~ 338 (810)
+|+-.|+.+....|. ..+.|..+..+|...|++.+|.-.-..+... -+.++.++..+| .++. .-.--++|.+++++
T Consensus 352 ~A~IaFR~Aq~Lap~-rL~~Y~GL~hsYLA~~~~kEA~~~An~~~~~-~~~sA~~LtL~g~~V~~~dp~~rEKAKkf~ek 429 (564)
T KOG1174|consen 352 QAVIAFRTAQMLAPY-RLEIYRGLFHSYLAQKRFKEANALANWTIRL-FQNSARSLTLFGTLVLFPDPRMREKAKKFAEK 429 (564)
T ss_pred HHHHHHHHHHhcchh-hHHHHHHHHHHHHhhchHHHHHHHHHHHHHH-hhcchhhhhhhcceeeccCchhHHHHHHHHHh
Confidence 999999999888875 8899999999999999999999999988876 788888888886 4443 33446899999999
Q ss_pred HHhhcCCCHHHHHHHHHHHHHcCCHHHHHHhcCCCCCCCcccCCCCCCChhhhHHHHHHHHHHHHHhcCCchhHHhhhhh
Q 003563 339 ALDRFEDNIDARLTLASLLLEEAKEEEAITLLSPPKDLDSLDMNSDKSNPWWLNEKIIMKLCHIYRAKGMPEDFVDAIFP 418 (810)
Q Consensus 339 al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~ 418 (810)
++.+.|+...+-..++.++...|++++++.++++.+...|+. .++..||.++..++.+.+|.+.|..
T Consensus 430 ~L~~~P~Y~~AV~~~AEL~~~Eg~~~D~i~LLe~~L~~~~D~-------------~LH~~Lgd~~~A~Ne~Q~am~~y~~ 496 (564)
T KOG1174|consen 430 SLKINPIYTPAVNLIAELCQVEGPTKDIIKLLEKHLIIFPDV-------------NLHNHLGDIMRAQNEPQKAMEYYYK 496 (564)
T ss_pred hhccCCccHHHHHHHHHHHHhhCccchHHHHHHHHHhhcccc-------------HHHHHHHHHHHHhhhHHHHHHHHHH
Confidence 999999999999999999999999999999999999999875 4889999999999999999999999
Q ss_pred hhhhhHHH
Q 003563 419 LVCESLCV 426 (810)
Q Consensus 419 ~l~~~~~~ 426 (810)
+++..+..
T Consensus 497 ALr~dP~~ 504 (564)
T KOG1174|consen 497 ALRQDPKS 504 (564)
T ss_pred HHhcCccc
Confidence 99876653
No 52
>PRK10747 putative protoheme IX biogenesis protein; Provisional
Probab=99.85 E-value=2.2e-18 Score=182.59 Aligned_cols=297 Identities=14% Similarity=0.098 Sum_probs=177.6
Q ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHHHH-HHHHHHcCChHHHHHHHHHHHhcCCCCHHH-HHHHHH
Q 003563 32 GVTKMLGEASLQYAYGNFEQAISLLKEVVRLSPNLPETYNTL-GLAHSALGNHKSAFDFYVIAAHLSPKDSAL-WKQLLT 109 (810)
Q Consensus 32 ~~~~~l~~a~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~l-~~~~~~~g~~~~A~~~~~~a~~~~p~~~~~-~~~la~ 109 (810)
.....+..|...+..|||+.|.+.+.+.-+..+ .+..++.+ +.+....|+++.|..++.++.+.+|++..+ ....+.
T Consensus 83 ~~~~~~~~gl~a~~eGd~~~A~k~l~~~~~~~~-~p~l~~llaA~aA~~~g~~~~A~~~l~~A~~~~~~~~~~~~l~~a~ 161 (398)
T PRK10747 83 RARKQTEQALLKLAEGDYQQVEKLMTRNADHAE-QPVVNYLLAAEAAQQRGDEARANQHLERAAELADNDQLPVEITRVR 161 (398)
T ss_pred HHHHHHHHHHHHHhCCCHHHHHHHHHHHHhccc-chHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCcchHHHHHHHHH
Confidence 344567788888888999998877777655433 34555544 555588899999999999988888887543 334488
Q ss_pred HHHHcCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHH--------HHHHHHHH
Q 003563 110 FAVQKGDTAQAMYYIRQAIRAEPKDISLRIHLASFYVEIGDYEKAAESYEQIQKLFPDNVDATK--------TGAQLFLK 181 (810)
Q Consensus 110 ~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~--------~la~~~~~ 181 (810)
++...|++++|...++++.+.+|+++.++..++.+|...|++++|++.+.++.+..+.++.... .+......
T Consensus 162 l~l~~g~~~~Al~~l~~~~~~~P~~~~al~ll~~~~~~~gdw~~a~~~l~~l~k~~~~~~~~~~~l~~~a~~~l~~~~~~ 241 (398)
T PRK10747 162 IQLARNENHAARHGVDKLLEVAPRHPEVLRLAEQAYIRTGAWSSLLDILPSMAKAHVGDEEHRAMLEQQAWIGLMDQAMA 241 (398)
T ss_pred HHHHCCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHhHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHH
Confidence 8888889999998888888888888888888888888888888888888888877665543222 11111111
Q ss_pred cCChHHHHHHHHHHHhhCCCCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhcCCCCCcHHHHHHHHHHHHhcCCHHH
Q 003563 182 CGQTARSIGILEEYLKVHPSDADLSVIDLLVAILMENNAYEKTLQHIEHAQIVRFSGKELPLKLKVKAGICYLRLGNMEK 261 (810)
Q Consensus 182 ~g~~~~A~~~~~~~l~~~p~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~ 261 (810)
..+.+...+.++..-+..|+++. +...++..+...|+.++|...++++++. .+ +..+....+ ....++.++
T Consensus 242 ~~~~~~l~~~w~~lp~~~~~~~~--~~~~~A~~l~~~g~~~~A~~~L~~~l~~----~~-~~~l~~l~~--~l~~~~~~~ 312 (398)
T PRK10747 242 DQGSEGLKRWWKNQSRKTRHQVA--LQVAMAEHLIECDDHDTAQQIILDGLKR----QY-DERLVLLIP--RLKTNNPEQ 312 (398)
T ss_pred hcCHHHHHHHHHhCCHHHhCCHH--HHHHHHHHHHHCCCHHHHHHHHHHHHhc----CC-CHHHHHHHh--hccCCChHH
Confidence 22222333333333333333333 4555666666666666666666655543 11 111111111 112355555
Q ss_pred HHHHHHHhhccCCchhHhHHHHHHHHHHHcCCcHHHHHHHHHHHhccCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHh
Q 003563 262 AEILFADLQWKNAIDHADLITEVADTLMSLGHSNSALKYYHFLETNAGTDNGYLYLKLAECYLSLKERAHAIMFFYKALD 341 (810)
Q Consensus 262 A~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~ 341 (810)
++..+++.++..|. ++..+..+|.++...+++++|.+.|++++.. .|++ ..+..++.++.+.|+.++|..+|++++.
T Consensus 313 al~~~e~~lk~~P~-~~~l~l~lgrl~~~~~~~~~A~~~le~al~~-~P~~-~~~~~La~~~~~~g~~~~A~~~~~~~l~ 389 (398)
T PRK10747 313 LEKVLRQQIKQHGD-TPLLWSTLGQLLMKHGEWQEASLAFRAALKQ-RPDA-YDYAWLADALDRLHKPEEAAAMRRDGLM 389 (398)
T ss_pred HHHHHHHHHhhCCC-CHHHHHHHHHHHHHCCCHHHHHHHHHHHHhc-CCCH-HHHHHHHHHHHHcCCHHHHHHHHHHHHh
Confidence 55555555555542 5555555555555555555555555555543 3332 2233455555555555555555555544
No 53
>PF13429 TPR_15: Tetratricopeptide repeat; PDB: 2VQ2_A 2PL2_B.
Probab=99.85 E-value=4.9e-21 Score=194.24 Aligned_cols=259 Identities=22% Similarity=0.360 Sum_probs=68.0
Q ss_pred HHHHHHHHcCCHHHHHHHHHHHHHh--CCCChHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcC
Q 003563 38 GEASLQYAYGNFEQAISLLKEVVRL--SPNLPETYNTLGLAHSALGNHKSAFDFYVIAAHLSPKDSALWKQLLTFAVQKG 115 (810)
Q Consensus 38 ~~a~~~~~~g~~~~A~~~~~~~l~~--~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~p~~~~~~~~la~~~~~~g 115 (810)
..|..++..|++++|++.+.+.+.. .|+++..|..+|.+....|+++.|+..|++++..++.++..+..++.+ ...+
T Consensus 13 ~~A~~~~~~~~~~~Al~~L~~~~~~~~~~~~~~~~~~~a~La~~~~~~~~A~~ay~~l~~~~~~~~~~~~~l~~l-~~~~ 91 (280)
T PF13429_consen 13 RLARLLYQRGDYEKALEVLKKAAQKIAPPDDPEYWRLLADLAWSLGDYDEAIEAYEKLLASDKANPQDYERLIQL-LQDG 91 (280)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred ccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccc-cccc
Confidence 4455555555555555555443322 245555555555555555555555555555555555555555555555 4555
Q ss_pred CHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC--CCCHHHHHHHHHHHHHcCChHHHHHHHH
Q 003563 116 DTAQAMYYIRQAIRAEPKDISLRIHLASFYVEIGDYEKAAESYEQIQKLF--PDNVDATKTGAQLFLKCGQTARSIGILE 193 (810)
Q Consensus 116 ~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~--p~~~~~~~~la~~~~~~g~~~~A~~~~~ 193 (810)
++++|+.++.++.+..+ ++..+...+.++...|+++++...++++.... |.++..+..+|.++.+.|+.++|+..++
T Consensus 92 ~~~~A~~~~~~~~~~~~-~~~~l~~~l~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~a~~~~~~G~~~~A~~~~~ 170 (280)
T PF13429_consen 92 DPEEALKLAEKAYERDG-DPRYLLSALQLYYRLGDYDEAEELLEKLEELPAAPDSARFWLALAEIYEQLGDPDKALRDYR 170 (280)
T ss_dssp ---------------------------H-HHHTT-HHHHHHHHHHHHH-T---T-HHHHHHHHHHHHHCCHHHHHHHHHH
T ss_pred ccccccccccccccccc-ccchhhHHHHHHHHHhHHHHHHHHHHHHHhccCCCCCHHHHHHHHHHHHHcCCHHHHHHHHH
Confidence 55555555555554332 33444444455555555555555555544332 3444555555555555555555555555
Q ss_pred HHHhhCCCCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhcCCCCCcHHHHHHHHHHHHhcCCHHHHHHHHHHhhccC
Q 003563 194 EYLKVHPSDADLSVIDLLVAILMENNAYEKTLQHIEHAQIVRFSGKELPLKLKVKAGICYLRLGNMEKAEILFADLQWKN 273 (810)
Q Consensus 194 ~~l~~~p~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~ 273 (810)
++++.+|+++. +...++.++...|+++++...+...... .
T Consensus 171 ~al~~~P~~~~--~~~~l~~~li~~~~~~~~~~~l~~~~~~--------------------------------------~ 210 (280)
T PF13429_consen 171 KALELDPDDPD--ARNALAWLLIDMGDYDEAREALKRLLKA--------------------------------------A 210 (280)
T ss_dssp HHHHH-TT-HH--HHHHHHHHHCTTCHHHHHHHHHHHHHHH---------------------------------------
T ss_pred HHHHcCCCCHH--HHHHHHHHHHHCCChHHHHHHHHHHHHH--------------------------------------C
Confidence 55555555443 4445555555555555555554444443 2
Q ss_pred CchhHhHHHHHHHHHHHcCCcHHHHHHHHHHHhccCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHH
Q 003563 274 AIDHADLITEVADTLMSLGHSNSALKYYHFLETNAGTDNGYLYLKLAECYLSLKERAHAIMFFYKAL 340 (810)
Q Consensus 274 ~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al 340 (810)
| .++..+..+|.++...|++++|+.+|+++... .|+++..+..+|.++...|+.++|..++++++
T Consensus 211 ~-~~~~~~~~la~~~~~lg~~~~Al~~~~~~~~~-~p~d~~~~~~~a~~l~~~g~~~~A~~~~~~~~ 275 (280)
T PF13429_consen 211 P-DDPDLWDALAAAYLQLGRYEEALEYLEKALKL-NPDDPLWLLAYADALEQAGRKDEALRLRRQAL 275 (280)
T ss_dssp H-TSCCHCHHHHHHHHHHT-HHHHHHHHHHHHHH-STT-HHHHHHHHHHHT----------------
T ss_pred c-CHHHHHHHHHHHhccccccccccccccccccc-cccccccccccccccccccccccccccccccc
Confidence 2 24444455555555555555555555555543 45555555555555555555555555555544
No 54
>PRK12370 invasion protein regulator; Provisional
Probab=99.85 E-value=7.6e-19 Score=194.42 Aligned_cols=251 Identities=13% Similarity=0.028 Sum_probs=171.5
Q ss_pred ChHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHc---------CCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHcCCHH
Q 003563 82 NHKSAFDFYVIAAHLSPKDSALWKQLLTFAVQK---------GDTAQAMYYIRQAIRAEPKDISLRIHLASFYVEIGDYE 152 (810)
Q Consensus 82 ~~~~A~~~~~~a~~~~p~~~~~~~~la~~~~~~---------g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~ 152 (810)
++++|+..|+++++++|+++.+|..+|.++... +++++|+..++++++++|+++.++..+|.++...|+++
T Consensus 276 ~~~~A~~~~~~Al~ldP~~a~a~~~La~~~~~~~~~g~~~~~~~~~~A~~~~~~Al~ldP~~~~a~~~lg~~~~~~g~~~ 355 (553)
T PRK12370 276 SLQQALKLLTQCVNMSPNSIAPYCALAECYLSMAQMGIFDKQNAMIKAKEHAIKATELDHNNPQALGLLGLINTIHSEYI 355 (553)
T ss_pred HHHHHHHHHHHHHhcCCccHHHHHHHHHHHHHHHHcCCcccchHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHccCHH
Confidence 356777777777777777777777777665533 33677777777777777777777777777777777777
Q ss_pred HHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHhhCCCCCChHHHHHHHHHHHHcCCHHHHHHHHHHHH
Q 003563 153 KAAESYEQIQKLFPDNVDATKTGAQLFLKCGQTARSIGILEEYLKVHPSDADLSVIDLLVAILMENNAYEKTLQHIEHAQ 232 (810)
Q Consensus 153 ~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~ 232 (810)
+|+..|+++++++|+++.++..+|.++...|++++|+..++++++.+|.++. ....++.++...|++++|+..+++++
T Consensus 356 ~A~~~~~~Al~l~P~~~~a~~~lg~~l~~~G~~~eAi~~~~~Al~l~P~~~~--~~~~~~~~~~~~g~~eeA~~~~~~~l 433 (553)
T PRK12370 356 VGSLLFKQANLLSPISADIKYYYGWNLFMAGQLEEALQTINECLKLDPTRAA--AGITKLWITYYHTGIDDAIRLGDELR 433 (553)
T ss_pred HHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCChh--hHHHHHHHHHhccCHHHHHHHHHHHH
Confidence 7777777777777777777777777777777777777777777777777654 33344555666777777777777776
Q ss_pred HHhcCCCCCcHHHHHHHHHHHHhcCCHHHHHHHHHHhhccCCchhHhHHHHHHHHHHHcCCcHHHHHHHHHHHhccCCCC
Q 003563 233 IVRFSGKELPLKLKVKAGICYLRLGNMEKAEILFADLQWKNAIDHADLITEVADTLMSLGHSNSALKYYHFLETNAGTDN 312 (810)
Q Consensus 233 ~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~ 312 (810)
... .+..+..+..+|.++...|++++|...+.++....| ........++..+...|+ +|...++.+.+. ....
T Consensus 434 ~~~---~p~~~~~~~~la~~l~~~G~~~eA~~~~~~~~~~~~-~~~~~~~~l~~~~~~~g~--~a~~~l~~ll~~-~~~~ 506 (553)
T PRK12370 434 SQH---LQDNPILLSMQVMFLSLKGKHELARKLTKEISTQEI-TGLIAVNLLYAEYCQNSE--RALPTIREFLES-EQRI 506 (553)
T ss_pred Hhc---cccCHHHHHHHHHHHHhCCCHHHHHHHHHHhhhccc-hhHHHHHHHHHHHhccHH--HHHHHHHHHHHH-hhHh
Confidence 552 144555667777777777777777777777655554 356666677777777663 666666665543 1112
Q ss_pred HHHHHHHHHHHHHccCHHHHHHHHHHHHhh
Q 003563 313 GYLYLKLAECYLSLKERAHAIMFFYKALDR 342 (810)
Q Consensus 313 ~~~~~~la~~~~~~g~~~~A~~~~~~al~~ 342 (810)
+......+.++.-.|+.+.+..+ +++.+.
T Consensus 507 ~~~~~~~~~~~~~~g~~~~~~~~-~~~~~~ 535 (553)
T PRK12370 507 DNNPGLLPLVLVAHGEAIAEKMW-NKFKNE 535 (553)
T ss_pred hcCchHHHHHHHHHhhhHHHHHH-HHhhcc
Confidence 21222266677777777777766 665544
No 55
>KOG4162 consensus Predicted calmodulin-binding protein [Signal transduction mechanisms]
Probab=99.85 E-value=5.9e-18 Score=176.44 Aligned_cols=373 Identities=17% Similarity=0.090 Sum_probs=293.5
Q ss_pred CHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHcCChHHHHHHHHHHHhcC--CCCHHHHHHH
Q 003563 30 SPGVTKMLGEASLQYAYGNFEQAISLLKEVVRLSPNLPETYNTLGLAHSALGNHKSAFDFYVIAAHLS--PKDSALWKQL 107 (810)
Q Consensus 30 ~~~~~~~l~~a~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~--p~~~~~~~~l 107 (810)
++.+-..+ ...+...|+|+.+.+.|++++...-...+.|+.++.++...|.-..|+...+...... |+++..+...
T Consensus 322 d~ai~d~L--t~al~~~g~f~~lae~fE~~~~~~~~~~e~w~~~als~saag~~s~Av~ll~~~~~~~~~ps~~s~~Lma 399 (799)
T KOG4162|consen 322 DAAIFDHL--TFALSRCGQFEVLAEQFEQALPFSFGEHERWYQLALSYSAAGSDSKAVNLLRESLKKSEQPSDISVLLMA 399 (799)
T ss_pred hHHHHHHH--HHHHHHHHHHHHHHHHHHHHhHhhhhhHHHHHHHHHHHHHhccchHHHHHHHhhcccccCCCcchHHHHH
Confidence 44444444 4446778999999999999988877788999999999999999999999999999888 7777777666
Q ss_pred HHHH-HHcCCHHHHHHHHHHHHHcCC-----CCHHHHHHHHHHHHHcC-----------CHHHHHHHHHHHHHhCCCCHH
Q 003563 108 LTFA-VQKGDTAQAMYYIRQAIRAEP-----KDISLRIHLASFYVEIG-----------DYEKAAESYEQIQKLFPDNVD 170 (810)
Q Consensus 108 a~~~-~~~g~~~~A~~~~~~al~~~p-----~~~~~~~~la~~~~~~g-----------~~~~A~~~~~~~l~~~p~~~~ 170 (810)
+.++ .+.+..++++.+..+++.... -.+..+..+|.+|..+- ...++++.++++++.+|.|+.
T Consensus 400 sklc~e~l~~~eegldYA~kai~~~~~~~~~l~~~~~l~lGi~y~~~A~~a~~~seR~~~h~kslqale~av~~d~~dp~ 479 (799)
T KOG4162|consen 400 SKLCIERLKLVEEGLDYAQKAISLLGGQRSHLKPRGYLFLGIAYGFQARQANLKSERDALHKKSLQALEEAVQFDPTDPL 479 (799)
T ss_pred HHHHHhchhhhhhHHHHHHHHHHHhhhhhhhhhhhHHHHHHHHHHhHhhcCCChHHHHHHHHHHHHHHHHHHhcCCCCch
Confidence 6555 456889999999999988321 22456777777775432 256888999999999999999
Q ss_pred HHHHHHHHHHHcCChHHHHHHHHHHHhhCCCCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhcCCCCCcHHHHHHHH
Q 003563 171 ATKTGAQLFLKCGQTARSIGILEEYLKVHPSDADLSVIDLLVAILMENNAYEKTLQHIEHAQIVRFSGKELPLKLKVKAG 250 (810)
Q Consensus 171 ~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~la 250 (810)
+.+.++.-|..+++.+.|....+++++.++.+.. .+|..++.++...+++.+|+.+...++..++.+. .......
T Consensus 480 ~if~lalq~A~~R~l~sAl~~~~eaL~l~~~~~~-~~whLLALvlSa~kr~~~Al~vvd~al~E~~~N~----~l~~~~~ 554 (799)
T KOG4162|consen 480 VIFYLALQYAEQRQLTSALDYAREALALNRGDSA-KAWHLLALVLSAQKRLKEALDVVDAALEEFGDNH----VLMDGKI 554 (799)
T ss_pred HHHHHHHHHHHHHhHHHHHHHHHHHHHhcCCccH-HHHHHHHHHHhhhhhhHHHHHHHHHHHHHhhhhh----hhchhhh
Confidence 9999999999999999999999999999776543 4888999999999999999999998888755321 1111111
Q ss_pred HHHHhcCCH-------------------------------------------HHHHHHHHHhhc--------cC-----C
Q 003563 251 ICYLRLGNM-------------------------------------------EKAEILFADLQW--------KN-----A 274 (810)
Q Consensus 251 ~~~~~~g~~-------------------------------------------~~A~~~~~~~~~--------~~-----~ 274 (810)
.+-...++. .+|......+.. .+ |
T Consensus 555 ~i~~~~~~~e~~l~t~~~~L~~we~~~~~q~~~~~g~~~~lk~~l~la~~q~~~a~s~sr~ls~l~a~~~~~~~se~~Lp 634 (799)
T KOG4162|consen 555 HIELTFNDREEALDTCIHKLALWEAEYGVQQTLDEGKLLRLKAGLHLALSQPTDAISTSRYLSSLVASQLKSAGSELKLP 634 (799)
T ss_pred hhhhhcccHHHHHHHHHHHHHHHHhhhhHhhhhhhhhhhhhhcccccCcccccccchhhHHHHHHHHhhhhhcccccccC
Confidence 111112222 223222222110 00 0
Q ss_pred ------c------hhHhHHHHHHHHHHHcCCcHHHHHHHHHHHhccCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHhh
Q 003563 275 ------I------DHADLITEVADTLMSLGHSNSALKYYHFLETNAGTDNGYLYLKLAECYLSLKERAHAIMFFYKALDR 342 (810)
Q Consensus 275 ------~------~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~ 342 (810)
. .....|...+..+...++.++|..++.++... .|..+..|+..|.++...|+.++|.+.|..++.+
T Consensus 635 ~s~~~~~~~~~~~~~~~lwllaa~~~~~~~~~~~a~~CL~Ea~~~-~~l~~~~~~~~G~~~~~~~~~~EA~~af~~Al~l 713 (799)
T KOG4162|consen 635 SSTVLPGPDSLWYLLQKLWLLAADLFLLSGNDDEARSCLLEASKI-DPLSASVYYLRGLLLEVKGQLEEAKEAFLVALAL 713 (799)
T ss_pred cccccCCCCchHHHHHHHHHHHHHHHHhcCCchHHHHHHHHHHhc-chhhHHHHHHhhHHHHHHHhhHHHHHHHHHHHhc
Confidence 0 01235677899999999999999999999877 8999999999999999999999999999999999
Q ss_pred cCCCHHHHHHHHHHHHHcCCHHHHHH--hcCCCCCCCcccCCCCCCChhhhHHHHHHHHHHHHHhcCCchhHHhhhhhhh
Q 003563 343 FEDNIDARLTLASLLLEEAKEEEAIT--LLSPPKDLDSLDMNSDKSNPWWLNEKIIMKLCHIYRAKGMPEDFVDAIFPLV 420 (810)
Q Consensus 343 ~p~~~~~~~~la~~~~~~g~~~~A~~--~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~l 420 (810)
+|+++.+...+|.++.+.|+..-|.. ++..++..+|.++ ++++.+|.++...|+.++|.+.|+..+
T Consensus 714 dP~hv~s~~Ala~~lle~G~~~la~~~~~L~dalr~dp~n~------------eaW~~LG~v~k~~Gd~~~Aaecf~aa~ 781 (799)
T KOG4162|consen 714 DPDHVPSMTALAELLLELGSPRLAEKRSLLSDALRLDPLNH------------EAWYYLGEVFKKLGDSKQAAECFQAAL 781 (799)
T ss_pred CCCCcHHHHHHHHHHHHhCCcchHHHHHHHHHHHhhCCCCH------------HHHHHHHHHHHHccchHHHHHHHHHHH
Confidence 99999999999999999999888887 9999999999875 588999999999999999999999887
Q ss_pred hh
Q 003563 421 CE 422 (810)
Q Consensus 421 ~~ 422 (810)
+-
T Consensus 782 qL 783 (799)
T KOG4162|consen 782 QL 783 (799)
T ss_pred hh
Confidence 54
No 56
>TIGR00540 hemY_coli hemY protein. This is an uncharacterized protein encoded next to a heme-biosynthetic enzyme in two gamma division proteobacteria (E. coli and H. influenzae). It is known in no other species. The gene symbol hemY is unfortunate in that an unrelated protein, protoporphyrinogen oxidase, is designated as HemG in E. coli but as HemY in Bacillus subtilis.
Probab=99.85 E-value=1.4e-18 Score=185.31 Aligned_cols=305 Identities=14% Similarity=0.065 Sum_probs=251.9
Q ss_pred HHHHHHHHHHHcCChHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCH-HHHHHHHHHHHH
Q 003563 69 TYNTLGLAHSALGNHKSAFDFYVIAAHLSPKDSALWKQLLTFAVQKGDTAQAMYYIRQAIRAEPKDI-SLRIHLASFYVE 147 (810)
Q Consensus 69 ~~~~l~~~~~~~g~~~~A~~~~~~a~~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~-~~~~~la~~~~~ 147 (810)
.....|.+....|+++.|.+.+.++.+..|+....+...|.++..+|+++.|..++.++.+..|++. .+....+.++..
T Consensus 86 ~~~~~glla~~~g~~~~A~~~l~~~~~~~~~~~~~~llaA~aa~~~g~~~~A~~~l~~a~~~~p~~~l~~~~~~a~l~l~ 165 (409)
T TIGR00540 86 KQTEEALLKLAEGDYAKAEKLIAKNADHAAEPVLNLIKAAEAAQQRGDEARANQHLEEAAELAGNDNILVEIARTRILLA 165 (409)
T ss_pred HHHHHHHHHHhCCCHHHHHHHHHHHhhcCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCcCchHHHHHHHHHHHH
Confidence 3466688888999999999999999999998888888899999999999999999999999988875 566667999999
Q ss_pred cCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHhhCCCCCCh--HHHHHHHHHHHHcCCHHHHH
Q 003563 148 IGDYEKAAESYEQIQKLFPDNVDATKTGAQLFLKCGQTARSIGILEEYLKVHPSDADL--SVIDLLVAILMENNAYEKTL 225 (810)
Q Consensus 148 ~g~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~--~~~~~la~~~~~~g~~~~A~ 225 (810)
.|++++|...++++.+..|+++.++..++.++...|++++|.+.+.+..+..+.++.. ........-....+..+++.
T Consensus 166 ~~~~~~Al~~l~~l~~~~P~~~~~l~ll~~~~~~~~d~~~a~~~l~~l~k~~~~~~~~~~~l~~~a~~~~l~~~~~~~~~ 245 (409)
T TIGR00540 166 QNELHAARHGVDKLLEMAPRHKEVLKLAEEAYIRSGAWQALDDIIDNMAKAGLFDDEEFADLEQKAEIGLLDEAMADEGI 245 (409)
T ss_pred CCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHhhHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHhcCH
Confidence 9999999999999999999999999999999999999999999999999875443321 01111222223444555566
Q ss_pred HHHHHHHHHhcCCCCCcHHHHHHHHHHHHhcCCHHHHHHHHHHhhccCCchhHhH-HHHHHHHHHHcCCcHHHHHHHHHH
Q 003563 226 QHIEHAQIVRFSGKELPLKLKVKAGICYLRLGNMEKAEILFADLQWKNAIDHADL-ITEVADTLMSLGHSNSALKYYHFL 304 (810)
Q Consensus 226 ~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~-~~~la~~~~~~~~~~~A~~~~~~~ 304 (810)
..+.++....|...+....+...++..+...|++++|...++++++..|++.... ...........++.+.+++.+++.
T Consensus 246 ~~L~~~~~~~p~~~~~~~~l~~~~a~~l~~~g~~~~A~~~l~~~l~~~pd~~~~~~~~l~~~~~l~~~~~~~~~~~~e~~ 325 (409)
T TIGR00540 246 DGLLNWWKNQPRHRRHNIALKIALAEHLIDCDDHDSAQEIIFDGLKKLGDDRAISLPLCLPIPRLKPEDNEKLEKLIEKQ 325 (409)
T ss_pred HHHHHHHHHCCHHHhCCHHHHHHHHHHHHHCCChHHHHHHHHHHHhhCCCcccchhHHHHHhhhcCCCChHHHHHHHHHH
Confidence 6777777764433446789999999999999999999999999999887532221 122333334568889999999999
Q ss_pred HhccCCCCH--HHHHHHHHHHHHccCHHHHHHHHH--HHHhhcCCCHHHHHHHHHHHHHcCCHHHHHHhcCCCCC
Q 003563 305 ETNAGTDNG--YLYLKLAECYLSLKERAHAIMFFY--KALDRFEDNIDARLTLASLLLEEAKEEEAITLLSPPKD 375 (810)
Q Consensus 305 ~~~~~~~~~--~~~~~la~~~~~~g~~~~A~~~~~--~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~ 375 (810)
.+. .|+++ .+...+|.++...|++++|.++|+ .+++..|++.. +..+|.++.+.|+.++|.+++++++.
T Consensus 326 lk~-~p~~~~~~ll~sLg~l~~~~~~~~~A~~~le~a~a~~~~p~~~~-~~~La~ll~~~g~~~~A~~~~~~~l~ 398 (409)
T TIGR00540 326 AKN-VDDKPKCCINRALGQLLMKHGEFIEAADAFKNVAACKEQLDAND-LAMAADAFDQAGDKAEAAAMRQDSLG 398 (409)
T ss_pred HHh-CCCChhHHHHHHHHHHHHHcccHHHHHHHHHHhHHhhcCCCHHH-HHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 976 89999 889999999999999999999999 57778887765 55999999999999999999987643
No 57
>KOG1174 consensus Anaphase-promoting complex (APC), subunit 7 [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=99.85 E-value=4.5e-18 Score=164.04 Aligned_cols=312 Identities=13% Similarity=0.040 Sum_probs=275.3
Q ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCC
Q 003563 37 LGEASLQYAYGNFEQAISLLKEVVRLSPNLPETYNTLGLAHSALGNHKSAFDFYVIAAHLSPKDSALWKQLLTFAVQKGD 116 (810)
Q Consensus 37 l~~a~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~p~~~~~~~~la~~~~~~g~ 116 (810)
...|.++....-+..+..++-+-...-|++...+..+|.+++..|++++|+..|+++..++|......-..|.++...|+
T Consensus 202 ka~Aq~~~~~hs~a~~t~l~le~~~~lr~NvhLl~~lak~~~~~Gdn~~a~~~Fe~~~~~dpy~i~~MD~Ya~LL~~eg~ 281 (564)
T KOG1174|consen 202 KALAQMFNFKHSDASQTFLMLHDNTTLRCNEHLMMALGKCLYYNGDYFQAEDIFSSTLCANPDNVEAMDLYAVLLGQEGG 281 (564)
T ss_pred HHHHHHHhcccchhhhHHHHHHhhccCCccHHHHHHHhhhhhhhcCchHHHHHHHHHhhCChhhhhhHHHHHHHHHhccC
Confidence 34555555555566666677777888999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHH
Q 003563 117 TAQAMYYIRQAIRAEPKDISLRIHLASFYVEIGDYEKAAESYEQIQKLFPDNVDATKTGAQLFLKCGQTARSIGILEEYL 196 (810)
Q Consensus 117 ~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~l 196 (810)
+++-.......+..+.....-|+.-+...+..+++..|+.+-+++++.+|.+..++...|.++...|+.++|+-.|+.+.
T Consensus 282 ~e~~~~L~~~Lf~~~~~ta~~wfV~~~~l~~~K~~~rAL~~~eK~I~~~~r~~~alilKG~lL~~~~R~~~A~IaFR~Aq 361 (564)
T KOG1174|consen 282 CEQDSALMDYLFAKVKYTASHWFVHAQLLYDEKKFERALNFVEKCIDSEPRNHEALILKGRLLIALERHTQAVIAFRTAQ 361 (564)
T ss_pred HhhHHHHHHHHHhhhhcchhhhhhhhhhhhhhhhHHHHHHHHHHHhccCcccchHHHhccHHHHhccchHHHHHHHHHHH
Confidence 99999999999988877888889999999999999999999999999999999999999999999999999999999999
Q ss_pred hhCCCCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhcCCCCCcHHHHHHHH-HHH-HhcCCHHHHHHHHHHhhccCC
Q 003563 197 KVHPSDADLSVIDLLVAILMENNAYEKTLQHIEHAQIVRFSGKELPLKLKVKAG-ICY-LRLGNMEKAEILFADLQWKNA 274 (810)
Q Consensus 197 ~~~p~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~la-~~~-~~~g~~~~A~~~~~~~~~~~~ 274 (810)
.+.|...+ .|..+..+|...|++.+|...-+.++..+ +.+...+..+| .++ ..-.--++|..++++.+...|
T Consensus 362 ~Lap~rL~--~Y~GL~hsYLA~~~~kEA~~~An~~~~~~----~~sA~~LtL~g~~V~~~dp~~rEKAKkf~ek~L~~~P 435 (564)
T KOG1174|consen 362 MLAPYRLE--IYRGLFHSYLAQKRFKEANALANWTIRLF----QNSARSLTLFGTLVLFPDPRMREKAKKFAEKSLKINP 435 (564)
T ss_pred hcchhhHH--HHHHHHHHHHhhchHHHHHHHHHHHHHHh----hcchhhhhhhcceeeccCchhHHHHHHHHHhhhccCC
Confidence 99998776 89999999999999999999999999884 45555555554 333 333446889999999999998
Q ss_pred chhHhHHHHHHHHHHHcCCcHHHHHHHHHHHhccCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHhhcCCCHHHHHHHH
Q 003563 275 IDHADLITEVADTLMSLGHSNSALKYYHFLETNAGTDNGYLYLKLAECYLSLKERAHAIMFFYKALDRFEDNIDARLTLA 354 (810)
Q Consensus 275 ~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la 354 (810)
. ...+...++.++...|.+.+++.++++.+. ...+...+..+|.++...+.+.+|..+|..++.++|++..+...+-
T Consensus 436 ~-Y~~AV~~~AEL~~~Eg~~~D~i~LLe~~L~--~~~D~~LH~~Lgd~~~A~Ne~Q~am~~y~~ALr~dP~~~~sl~Gl~ 512 (564)
T KOG1174|consen 436 I-YTPAVNLIAELCQVEGPTKDIIKLLEKHLI--IFPDVNLHNHLGDIMRAQNEPQKAMEYYYKALRQDPKSKRTLRGLR 512 (564)
T ss_pred c-cHHHHHHHHHHHHhhCccchHHHHHHHHHh--hccccHHHHHHHHHHHHhhhHHHHHHHHHHHHhcCccchHHHHHHH
Confidence 5 888999999999999999999999999985 4567789999999999999999999999999999999987776665
Q ss_pred HHH
Q 003563 355 SLL 357 (810)
Q Consensus 355 ~~~ 357 (810)
.+-
T Consensus 513 ~lE 515 (564)
T KOG1174|consen 513 LLE 515 (564)
T ss_pred HHH
Confidence 443
No 58
>COG3063 PilF Tfp pilus assembly protein PilF [Cell motility and secretion / Intracellular trafficking and secretion]
Probab=99.84 E-value=2.9e-18 Score=153.68 Aligned_cols=205 Identities=18% Similarity=0.131 Sum_probs=187.9
Q ss_pred CHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCCCHHHHHHHHH
Q 003563 30 SPGVTKMLGEASLQYAYGNFEQAISLLKEVVRLSPNLPETYNTLGLAHSALGNHKSAFDFYVIAAHLSPKDSALWKQLLT 109 (810)
Q Consensus 30 ~~~~~~~l~~a~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~p~~~~~~~~la~ 109 (810)
.......+.+|..|+..|++..|...++++++.+|++..+|..++.+|...|+.+.|.+.|++|+.++|++.+++.+.|.
T Consensus 32 ~~aa~arlqLal~YL~~gd~~~A~~nlekAL~~DPs~~~a~~~~A~~Yq~~Ge~~~A~e~YrkAlsl~p~~GdVLNNYG~ 111 (250)
T COG3063 32 NEAAKARLQLALGYLQQGDYAQAKKNLEKALEHDPSYYLAHLVRAHYYQKLGENDLADESYRKALSLAPNNGDVLNNYGA 111 (250)
T ss_pred HHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHcCChhhHHHHHHHHHhcCCCccchhhhhhH
Confidence 34566778999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHcCCHHHHHHHHHHHHHc--CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCChHH
Q 003563 110 FAVQKGDTAQAMYYIRQAIRA--EPKDISLRIHLASFYVEIGDYEKAAESYEQIQKLFPDNVDATKTGAQLFLKCGQTAR 187 (810)
Q Consensus 110 ~~~~~g~~~~A~~~~~~al~~--~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~ 187 (810)
.++.+|++++|...|++++.. .|..+..+-++|.|..+.|+++.|.++|+++++.+|+.+.....++...+..|++..
T Consensus 112 FLC~qg~~~eA~q~F~~Al~~P~Y~~~s~t~eN~G~Cal~~gq~~~A~~~l~raL~~dp~~~~~~l~~a~~~~~~~~y~~ 191 (250)
T COG3063 112 FLCAQGRPEEAMQQFERALADPAYGEPSDTLENLGLCALKAGQFDQAEEYLKRALELDPQFPPALLELARLHYKAGDYAP 191 (250)
T ss_pred HHHhCCChHHHHHHHHHHHhCCCCCCcchhhhhhHHHHhhcCCchhHHHHHHHHHHhCcCCChHHHHHHHHHHhcccchH
Confidence 999999999999999999973 345678899999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHhhCCCCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhc
Q 003563 188 SIGILEEYLKVHPSDADLSVIDLLVAILMENNAYEKTLQHIEHAQIVRF 236 (810)
Q Consensus 188 A~~~~~~~l~~~p~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~ 236 (810)
|..++++.....+-. ...+.....+....|+-+.+-++=.+....+|
T Consensus 192 Ar~~~~~~~~~~~~~--A~sL~L~iriak~~gd~~~a~~Y~~qL~r~fP 238 (250)
T COG3063 192 ARLYLERYQQRGGAQ--AESLLLGIRIAKRLGDRAAAQRYQAQLQRLFP 238 (250)
T ss_pred HHHHHHHHHhccccc--HHHHHHHHHHHHHhccHHHHHHHHHHHHHhCC
Confidence 999999988877643 34677778888899999999888887777744
No 59
>PRK12370 invasion protein regulator; Provisional
Probab=99.84 E-value=2.9e-18 Score=189.84 Aligned_cols=264 Identities=14% Similarity=0.078 Sum_probs=176.7
Q ss_pred HHHHHHHHHHHHHHc---CCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHc---------CChHHHHHHHHHHHhcCCC
Q 003563 32 GVTKMLGEASLQYAY---GNFEQAISLLKEVVRLSPNLPETYNTLGLAHSAL---------GNHKSAFDFYVIAAHLSPK 99 (810)
Q Consensus 32 ~~~~~l~~a~~~~~~---g~~~~A~~~~~~~l~~~p~~~~~~~~l~~~~~~~---------g~~~~A~~~~~~a~~~~p~ 99 (810)
+...++-+|...+.. +++++|+..|+++++.+|+++.++..+|.++... +++++|...++++++++|+
T Consensus 257 da~~~~lrg~~~~~~~~~~~~~~A~~~~~~Al~ldP~~a~a~~~La~~~~~~~~~g~~~~~~~~~~A~~~~~~Al~ldP~ 336 (553)
T PRK12370 257 DSTMVYLRGKHELNQYTPYSLQQALKLLTQCVNMSPNSIAPYCALAECYLSMAQMGIFDKQNAMIKAKEHAIKATELDHN 336 (553)
T ss_pred HHHHHHHHhHHHHHccCHHHHHHHHHHHHHHHhcCCccHHHHHHHHHHHHHHHHcCCcccchHHHHHHHHHHHHHhcCCC
Confidence 333445555444332 3466777777777777777777777777766533 2367777777777777777
Q ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHH
Q 003563 100 DSALWKQLLTFAVQKGDTAQAMYYIRQAIRAEPKDISLRIHLASFYVEIGDYEKAAESYEQIQKLFPDNVDATKTGAQLF 179 (810)
Q Consensus 100 ~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~la~~~ 179 (810)
++.++..+|.++...|++++|+.+|+++++++|+++.+++.+|.++...|++++|+..++++++++|.++.....++.++
T Consensus 337 ~~~a~~~lg~~~~~~g~~~~A~~~~~~Al~l~P~~~~a~~~lg~~l~~~G~~~eAi~~~~~Al~l~P~~~~~~~~~~~~~ 416 (553)
T PRK12370 337 NPQALGLLGLINTIHSEYIVGSLLFKQANLLSPISADIKYYYGWNLFMAGQLEEALQTINECLKLDPTRAAAGITKLWIT 416 (553)
T ss_pred CHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCChhhHHHHHHHH
Confidence 77777777777777777777777777777777777777777777777777777777777777777777766665666666
Q ss_pred HHcCChHHHHHHHHHHHhhC-CCCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhcCCCCCcHHHHHHHHHHHHhcCC
Q 003563 180 LKCGQTARSIGILEEYLKVH-PSDADLSVIDLLVAILMENNAYEKTLQHIEHAQIVRFSGKELPLKLKVKAGICYLRLGN 258 (810)
Q Consensus 180 ~~~g~~~~A~~~~~~~l~~~-p~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~ 258 (810)
+..|++++|+..+++++... |+++. .+..+|.++...|++++|...+.+.... .+........++..+...|
T Consensus 417 ~~~g~~eeA~~~~~~~l~~~~p~~~~--~~~~la~~l~~~G~~~eA~~~~~~~~~~----~~~~~~~~~~l~~~~~~~g- 489 (553)
T PRK12370 417 YYHTGIDDAIRLGDELRSQHLQDNPI--LLSMQVMFLSLKGKHELARKLTKEISTQ----EITGLIAVNLLYAEYCQNS- 489 (553)
T ss_pred HhccCHHHHHHHHHHHHHhccccCHH--HHHHHHHHHHhCCCHHHHHHHHHHhhhc----cchhHHHHHHHHHHHhccH-
Confidence 66777777777777777664 44433 5667777777777777777777776554 4455556666666666666
Q ss_pred HHHHHHHHHHhhccCCchhHhHHHHHHHHHHHcCCcHHHHHHHHHHH
Q 003563 259 MEKAEILFADLQWKNAIDHADLITEVADTLMSLGHSNSALKYYHFLE 305 (810)
Q Consensus 259 ~~~A~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~ 305 (810)
++|...+++++..... .+.-......++.-.|+.+.+..+ +++.
T Consensus 490 -~~a~~~l~~ll~~~~~-~~~~~~~~~~~~~~~g~~~~~~~~-~~~~ 533 (553)
T PRK12370 490 -ERALPTIREFLESEQR-IDNNPGLLPLVLVAHGEAIAEKMW-NKFK 533 (553)
T ss_pred -HHHHHHHHHHHHHhhH-hhcCchHHHHHHHHHhhhHHHHHH-HHhh
Confidence 3666666665443221 222223366666666666666655 5554
No 60
>TIGR02521 type_IV_pilW type IV pilus biogenesis/stability protein PilW. Members of this family are designated PilF in ref (PubMed:8973346) and PilW in ref (PubMed:15612916). This outer membrane protein is required both for pilus stability and for pilus function such as adherence to human cells. Members of this family contain copies of the TPR (tetratricopeptide repeat) domain.
Probab=99.84 E-value=3.1e-18 Score=169.93 Aligned_cols=205 Identities=21% Similarity=0.198 Sum_probs=186.6
Q ss_pred CCCHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCCCHHHHHHH
Q 003563 28 KLSPGVTKMLGEASLQYAYGNFEQAISLLKEVVRLSPNLPETYNTLGLAHSALGNHKSAFDFYVIAAHLSPKDSALWKQL 107 (810)
Q Consensus 28 ~~~~~~~~~l~~a~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~p~~~~~~~~l 107 (810)
..+.....++..|..++..|++++|+..+++++..+|+++.++..+|.++...|++++|+..+++++...|.+...+..+
T Consensus 26 ~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~ 105 (234)
T TIGR02521 26 DRNKAAKIRVQLALGYLEQGDLEVAKENLDKALEHDPDDYLAYLALALYYQQLGELEKAEDSFRRALTLNPNNGDVLNNY 105 (234)
T ss_pred cCCcHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHH
Confidence 33455677888999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHcCCHHHHHHHHHHHHHcC--CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCh
Q 003563 108 LTFAVQKGDTAQAMYYIRQAIRAE--PKDISLRIHLASFYVEIGDYEKAAESYEQIQKLFPDNVDATKTGAQLFLKCGQT 185 (810)
Q Consensus 108 a~~~~~~g~~~~A~~~~~~al~~~--p~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~ 185 (810)
|.++...|++++|+..+++++... |.....+..+|.++...|++++|...+.+++...|+++.++..+|.++...|++
T Consensus 106 ~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~ 185 (234)
T TIGR02521 106 GTFLCQQGKYEQAMQQFEQAIEDPLYPQPARSLENAGLCALKAGDFDKAEKYLTRALQIDPQRPESLLELAELYYLRGQY 185 (234)
T ss_pred HHHHHHcccHHHHHHHHHHHHhccccccchHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcCChHHHHHHHHHHHHcCCH
Confidence 999999999999999999999853 456678889999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHhhCCCCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Q 003563 186 ARSIGILEEYLKVHPSDADLSVIDLLVAILMENNAYEKTLQHIEHAQIV 234 (810)
Q Consensus 186 ~~A~~~~~~~l~~~p~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~ 234 (810)
++|...+++++...|.++. .+..++.++...|+.++|..+.+.+...
T Consensus 186 ~~A~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~a~~~~~~~~~~ 232 (234)
T TIGR02521 186 KDARAYLERYQQTYNQTAE--SLWLGIRIARALGDVAAAQRYGAQLQKL 232 (234)
T ss_pred HHHHHHHHHHHHhCCCCHH--HHHHHHHHHHHHhhHHHHHHHHHHHHhh
Confidence 9999999999998776544 6678889999999999999888776554
No 61
>PRK11189 lipoprotein NlpI; Provisional
Probab=99.84 E-value=1.9e-18 Score=175.05 Aligned_cols=238 Identities=13% Similarity=0.047 Sum_probs=182.2
Q ss_pred cCCHHHHHHHHHHHHHhCC---C-ChHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCHHHHH
Q 003563 46 YGNFEQAISLLKEVVRLSP---N-LPETYNTLGLAHSALGNHKSAFDFYVIAAHLSPKDSALWKQLLTFAVQKGDTAQAM 121 (810)
Q Consensus 46 ~g~~~~A~~~~~~~l~~~p---~-~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~p~~~~~~~~la~~~~~~g~~~~A~ 121 (810)
.+..+.++..+.+++...| . .+..|+.+|.++...|++++|+..|.++++++|+++.+|..+|.++...|++++|+
T Consensus 39 ~~~~e~~i~~~~~~l~~~~~~~~~~a~~~~~~g~~~~~~g~~~~A~~~~~~Al~l~P~~~~a~~~lg~~~~~~g~~~~A~ 118 (296)
T PRK11189 39 TLQQEVILARLNQILASRDLTDEERAQLHYERGVLYDSLGLRALARNDFSQALALRPDMADAYNYLGIYLTQAGNFDAAY 118 (296)
T ss_pred chHHHHHHHHHHHHHccccCCcHhhHHHHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHCCCHHHHH
Confidence 3567888999999996443 3 46789999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHhhCCC
Q 003563 122 YYIRQAIRAEPKDISLRIHLASFYVEIGDYEKAAESYEQIQKLFPDNVDATKTGAQLFLKCGQTARSIGILEEYLKVHPS 201 (810)
Q Consensus 122 ~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~ 201 (810)
..|+++++++|++..++..+|.++...|++++|++.++++++.+|+++..... ..+....+++++|+..+++.....+.
T Consensus 119 ~~~~~Al~l~P~~~~a~~~lg~~l~~~g~~~eA~~~~~~al~~~P~~~~~~~~-~~l~~~~~~~~~A~~~l~~~~~~~~~ 197 (296)
T PRK11189 119 EAFDSVLELDPTYNYAYLNRGIALYYGGRYELAQDDLLAFYQDDPNDPYRALW-LYLAESKLDPKQAKENLKQRYEKLDK 197 (296)
T ss_pred HHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHH-HHHHHccCCHHHHHHHHHHHHhhCCc
Confidence 99999999999999999999999999999999999999999999998742222 22345678899999999887655433
Q ss_pred CCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhc---CCCCCcHHHHHHHHHHHHhcCCHHHHHHHHHHhhccCCchhH
Q 003563 202 DADLSVIDLLVAILMENNAYEKTLQHIEHAQIVRF---SGKELPLKLKVKAGICYLRLGNMEKAEILFADLQWKNAIDHA 278 (810)
Q Consensus 202 ~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~---~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~ 278 (810)
.. + ..+.+....|+..++ ..+..+..... .-.+...++++.+|.++...|++++|+.+|++++..+|.+..
T Consensus 198 ~~----~-~~~~~~~~lg~~~~~-~~~~~~~~~~~~~~~l~~~~~ea~~~Lg~~~~~~g~~~~A~~~~~~Al~~~~~~~~ 271 (296)
T PRK11189 198 EQ----W-GWNIVEFYLGKISEE-TLMERLKAGATDNTELAERLCETYFYLAKYYLSLGDLDEAAALFKLALANNVYNFV 271 (296)
T ss_pred cc----c-HHHHHHHHccCCCHH-HHHHHHHhcCCCcHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCchHH
Confidence 22 1 134555556666544 23444332211 002334567777888888888888888888887777766566
Q ss_pred hHHHHHHHHHHH
Q 003563 279 DLITEVADTLMS 290 (810)
Q Consensus 279 ~~~~~la~~~~~ 290 (810)
+..+.+......
T Consensus 272 e~~~~~~e~~~~ 283 (296)
T PRK11189 272 EHRYALLELALL 283 (296)
T ss_pred HHHHHHHHHHHH
Confidence 665555554443
No 62
>KOG1129 consensus TPR repeat-containing protein [General function prediction only]
Probab=99.83 E-value=2.4e-19 Score=167.50 Aligned_cols=274 Identities=16% Similarity=0.131 Sum_probs=233.7
Q ss_pred HHHHHcCChHHHHHHHHHHHhcC---CC-------CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHHHHHHHHHH
Q 003563 75 LAHSALGNHKSAFDFYVIAAHLS---PK-------DSALWKQLLTFAVQKGDTAQAMYYIRQAIRAEPKDISLRIHLASF 144 (810)
Q Consensus 75 ~~~~~~g~~~~A~~~~~~a~~~~---p~-------~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~ 144 (810)
.+++..+|...|-......++.+ |. +..--..+|.||+++|.+.+|.+.++.+++..| .++.+..++.+
T Consensus 187 y~fyhenDv~~aH~~~~~~~~~~~a~~s~~~~~~~dwwWk~Q~gkCylrLgm~r~AekqlqssL~q~~-~~dTfllLskv 265 (478)
T KOG1129|consen 187 YLFYHENDVQKAHSLCQAVLEVERAKPSGSTGCTLDWWWKQQMGKCYLRLGMPRRAEKQLQSSLTQFP-HPDTFLLLSKV 265 (478)
T ss_pred HHHHhhhhHHHHHHHHHHHHHHHhccccccccchHhHHHHHHHHHHHHHhcChhhhHHHHHHHhhcCC-chhHHHHHHHH
Confidence 45666778888776665555432 21 112224789999999999999999999998776 67889999999
Q ss_pred HHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHhhCCCCCChHHHHHHHHHHHHcCCHHHH
Q 003563 145 YVEIGDYEKAAESYEQIQKLFPDNVDATKTGAQLFLKCGQTARSIGILEEYLKVHPSDADLSVIDLLVAILMENNAYEKT 224 (810)
Q Consensus 145 ~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~~~la~~~~~~g~~~~A 224 (810)
|.+..++..|+..+...++..|.+...+...+.++..+++.++|.++|+.+++.+|.+.+ +.-.+|.-|+..++++-|
T Consensus 266 Y~ridQP~~AL~~~~~gld~fP~~VT~l~g~ARi~eam~~~~~a~~lYk~vlk~~~~nvE--aiAcia~~yfY~~~PE~A 343 (478)
T KOG1129|consen 266 YQRIDQPERALLVIGEGLDSFPFDVTYLLGQARIHEAMEQQEDALQLYKLVLKLHPINVE--AIACIAVGYFYDNNPEMA 343 (478)
T ss_pred HHHhccHHHHHHHHhhhhhcCCchhhhhhhhHHHHHHHHhHHHHHHHHHHHHhcCCccce--eeeeeeeccccCCChHHH
Confidence 999999999999999999999999999999999999999999999999999999999988 455778888899999999
Q ss_pred HHHHHHHHHHhcCCCCCcHHHHHHHHHHHHhcCCHHHHHHHHHHhhc--cCCchhHhHHHHHHHHHHHcCCcHHHHHHHH
Q 003563 225 LQHIEHAQIVRFSGKELPLKLKVKAGICYLRLGNMEKAEILFADLQW--KNAIDHADLITEVADTLMSLGHSNSALKYYH 302 (810)
Q Consensus 225 ~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~--~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~ 302 (810)
+.+|++.++. ...+++++.++|.|.+..++++-++..|++++. ..|....++|+++|.+....|++.-|..+|+
T Consensus 344 lryYRRiLqm----G~~speLf~NigLCC~yaqQ~D~~L~sf~RAlstat~~~~aaDvWYNlg~vaV~iGD~nlA~rcfr 419 (478)
T KOG1129|consen 344 LRYYRRILQM----GAQSPELFCNIGLCCLYAQQIDLVLPSFQRALSTATQPGQAADVWYNLGFVAVTIGDFNLAKRCFR 419 (478)
T ss_pred HHHHHHHHHh----cCCChHHHhhHHHHHHhhcchhhhHHHHHHHHhhccCcchhhhhhhccceeEEeccchHHHHHHHH
Confidence 9999999998 678889999999999999999999999999765 3455578889999999999999999999998
Q ss_pred HHHhccCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHhhcCCCHHHHHHHHHH
Q 003563 303 FLETNAGTDNGYLYLKLAECYLSLKERAHAIMFFYKALDRFEDNIDARLTLASL 356 (810)
Q Consensus 303 ~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~ 356 (810)
-++.. ++++.+++.++|.+-.+.|+.++|..++..+-...|+-.+..++++.+
T Consensus 420 laL~~-d~~h~ealnNLavL~~r~G~i~~Arsll~~A~s~~P~m~E~~~Nl~~~ 472 (478)
T KOG1129|consen 420 LALTS-DAQHGEALNNLAVLAARSGDILGARSLLNAAKSVMPDMAEVTTNLQFM 472 (478)
T ss_pred HHhcc-CcchHHHHHhHHHHHhhcCchHHHHHHHHHhhhhCccccccccceeEE
Confidence 88865 888899999999999999999999999999988888877776666543
No 63
>PRK10747 putative protoheme IX biogenesis protein; Provisional
Probab=99.82 E-value=1.4e-17 Score=176.39 Aligned_cols=298 Identities=16% Similarity=0.132 Sum_probs=238.5
Q ss_pred HHHHHHHHHHHcCChHHHHHHHHHHHhcCCCCHHHHHHH-HHHHHHcCCHHHHHHHHHHHHHcCCCCHHH-HHHHHHHHH
Q 003563 69 TYNTLGLAHSALGNHKSAFDFYVIAAHLSPKDSALWKQL-LTFAVQKGDTAQAMYYIRQAIRAEPKDISL-RIHLASFYV 146 (810)
Q Consensus 69 ~~~~l~~~~~~~g~~~~A~~~~~~a~~~~p~~~~~~~~l-a~~~~~~g~~~~A~~~~~~al~~~p~~~~~-~~~la~~~~ 146 (810)
..+..|.+....|++++|.+...++....+ ++..++.+ +......|+++.|..++.++.+.+|++..+ ....+.++.
T Consensus 86 ~~~~~gl~a~~eGd~~~A~k~l~~~~~~~~-~p~l~~llaA~aA~~~g~~~~A~~~l~~A~~~~~~~~~~~~l~~a~l~l 164 (398)
T PRK10747 86 KQTEQALLKLAEGDYQQVEKLMTRNADHAE-QPVVNYLLAAEAAQQRGDEARANQHLERAAELADNDQLPVEITRVRIQL 164 (398)
T ss_pred HHHHHHHHHHhCCCHHHHHHHHHHHHhccc-chHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCcchHHHHHHHHHHHH
Confidence 346678888889999999988888666543 34544444 666699999999999999999999988544 345599999
Q ss_pred HcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHhhCCCCCCh-H-----HHHHHHHHHHHcCC
Q 003563 147 EIGDYEKAAESYEQIQKLFPDNVDATKTGAQLFLKCGQTARSIGILEEYLKVHPSDADL-S-----VIDLLVAILMENNA 220 (810)
Q Consensus 147 ~~g~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~-~-----~~~~la~~~~~~g~ 220 (810)
..|++++|+..++++.+..|+++.++..++.+|...|++++|++.+.++.+..+.++.. . ++..+.......
T Consensus 165 ~~g~~~~Al~~l~~~~~~~P~~~~al~ll~~~~~~~gdw~~a~~~l~~l~k~~~~~~~~~~~l~~~a~~~l~~~~~~~-- 242 (398)
T PRK10747 165 ARNENHAARHGVDKLLEVAPRHPEVLRLAEQAYIRTGAWSSLLDILPSMAKAHVGDEEHRAMLEQQAWIGLMDQAMAD-- 242 (398)
T ss_pred HCCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHhHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHh--
Confidence 99999999999999999999999999999999999999999999999998877664331 0 111111111122
Q ss_pred HHHHHHHHHHHHHHhcCCCCCcHHHHHHHHHHHHhcCCHHHHHHHHHHhhccCCchhHhHHHHHHHHHHHcCCcHHHHHH
Q 003563 221 YEKTLQHIEHAQIVRFSGKELPLKLKVKAGICYLRLGNMEKAEILFADLQWKNAIDHADLITEVADTLMSLGHSNSALKY 300 (810)
Q Consensus 221 ~~~A~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~ 300 (810)
.....+.+..+..+...+..+.+...++..+...|+.++|...+++.+...+ ++......+.+ ..++++++++.
T Consensus 243 --~~~~~l~~~w~~lp~~~~~~~~~~~~~A~~l~~~g~~~~A~~~L~~~l~~~~--~~~l~~l~~~l--~~~~~~~al~~ 316 (398)
T PRK10747 243 --QGSEGLKRWWKNQSRKTRHQVALQVAMAEHLIECDDHDTAQQIILDGLKRQY--DERLVLLIPRL--KTNNPEQLEKV 316 (398)
T ss_pred --cCHHHHHHHHHhCCHHHhCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCC--CHHHHHHHhhc--cCCChHHHHHH
Confidence 2234444444443444567888999999999999999999999999988543 44444444443 45999999999
Q ss_pred HHHHHhccCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHhhcCCCHHHHHHHHHHHHHcCCHHHHHHhcCCCCCCC
Q 003563 301 YHFLETNAGTDNGYLYLKLAECYLSLKERAHAIMFFYKALDRFEDNIDARLTLASLLLEEAKEEEAITLLSPPKDLD 377 (810)
Q Consensus 301 ~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~ 377 (810)
++...+. .|+++..+..+|.++...|++++|.++|+++++..|++.. +..++.++.+.|+.++|..++++++...
T Consensus 317 ~e~~lk~-~P~~~~l~l~lgrl~~~~~~~~~A~~~le~al~~~P~~~~-~~~La~~~~~~g~~~~A~~~~~~~l~~~ 391 (398)
T PRK10747 317 LRQQIKQ-HGDTPLLWSTLGQLLMKHGEWQEASLAFRAALKQRPDAYD-YAWLADALDRLHKPEEAAAMRRDGLMLT 391 (398)
T ss_pred HHHHHhh-CCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCHHH-HHHHHHHHHHcCCHHHHHHHHHHHHhhh
Confidence 9999976 9999999999999999999999999999999999998644 6689999999999999999999887654
No 64
>KOG1129 consensus TPR repeat-containing protein [General function prediction only]
Probab=99.81 E-value=1.1e-18 Score=163.17 Aligned_cols=280 Identities=15% Similarity=0.129 Sum_probs=247.1
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC---CC-------ChHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCCCHH
Q 003563 33 VTKMLGEASLQYAYGNFEQAISLLKEVVRLS---PN-------LPETYNTLGLAHSALGNHKSAFDFYVIAAHLSPKDSA 102 (810)
Q Consensus 33 ~~~~l~~a~~~~~~g~~~~A~~~~~~~l~~~---p~-------~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~p~~~~ 102 (810)
+..+|+ .+++..+|...|-..+...++.+ |. +...-..+|.||++.|-+.+|.+.++.+++..| .++
T Consensus 181 ~kaLFe--y~fyhenDv~~aH~~~~~~~~~~~a~~s~~~~~~~dwwWk~Q~gkCylrLgm~r~AekqlqssL~q~~-~~d 257 (478)
T KOG1129|consen 181 VKALFE--YLFYHENDVQKAHSLCQAVLEVERAKPSGSTGCTLDWWWKQQMGKCYLRLGMPRRAEKQLQSSLTQFP-HPD 257 (478)
T ss_pred HHHHHH--HHHHhhhhHHHHHHHHHHHHHHHhccccccccchHhHHHHHHHHHHHHHhcChhhhHHHHHHHhhcCC-chh
Confidence 344443 35677889999988888776642 21 223346799999999999999999999998776 578
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHc
Q 003563 103 LWKQLLTFAVQKGDTAQAMYYIRQAIRAEPKDISLRIHLASFYVEIGDYEKAAESYEQIQKLFPDNVDATKTGAQLFLKC 182 (810)
Q Consensus 103 ~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~ 182 (810)
.+..++.+|.+..+...|+..+...++..|.+...+..++.++..++++++|+++|+.+++.+|.+.++.-.+|..|+..
T Consensus 258 TfllLskvY~ridQP~~AL~~~~~gld~fP~~VT~l~g~ARi~eam~~~~~a~~lYk~vlk~~~~nvEaiAcia~~yfY~ 337 (478)
T KOG1129|consen 258 TFLLLSKVYQRIDQPERALLVIGEGLDSFPFDVTYLLGQARIHEAMEQQEDALQLYKLVLKLHPINVEAIACIAVGYFYD 337 (478)
T ss_pred HHHHHHHHHHHhccHHHHHHHHhhhhhcCCchhhhhhhhHHHHHHHHhHHHHHHHHHHHHhcCCccceeeeeeeeccccC
Confidence 89999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CChHHHHHHHHHHHhhCCCCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhcCCCCCcHHHHHHHHHHHHhcCCHHHH
Q 003563 183 GQTARSIGILEEYLKVHPSDADLSVIDLLVAILMENNAYEKTLQHIEHAQIVRFSGKELPLKLKVKAGICYLRLGNMEKA 262 (810)
Q Consensus 183 g~~~~A~~~~~~~l~~~p~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A 262 (810)
++++-|+.+|+++++..-.+++ .+.++|.+++..++++-++..|++++.. ...+....++|+++|.+....|++.-|
T Consensus 338 ~~PE~AlryYRRiLqmG~~spe--Lf~NigLCC~yaqQ~D~~L~sf~RAlst-at~~~~aaDvWYNlg~vaV~iGD~nlA 414 (478)
T KOG1129|consen 338 NNPEMALRYYRRILQMGAQSPE--LFCNIGLCCLYAQQIDLVLPSFQRALST-ATQPGQAADVWYNLGFVAVTIGDFNLA 414 (478)
T ss_pred CChHHHHHHHHHHHHhcCCChH--HHhhHHHHHHhhcchhhhHHHHHHHHhh-ccCcchhhhhhhccceeEEeccchHHH
Confidence 9999999999999999888876 8899999999999999999999999987 333456679999999999999999999
Q ss_pred HHHHHHhhccCCchhHhHHHHHHHHHHHcCCcHHHHHHHHHHHhccCCCCHHHHHHHH
Q 003563 263 EILFADLQWKNAIDHADLITEVADTLMSLGHSNSALKYYHFLETNAGTDNGYLYLKLA 320 (810)
Q Consensus 263 ~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~la 320 (810)
..+|+-++..++. +.+++.++|.+..+.|+.++|..++..+... .|.-.+..++++
T Consensus 415 ~rcfrlaL~~d~~-h~ealnNLavL~~r~G~i~~Arsll~~A~s~-~P~m~E~~~Nl~ 470 (478)
T KOG1129|consen 415 KRCFRLALTSDAQ-HGEALNNLAVLAARSGDILGARSLLNAAKSV-MPDMAEVTTNLQ 470 (478)
T ss_pred HHHHHHHhccCcc-hHHHHHhHHHHHhhcCchHHHHHHHHHhhhh-Ccccccccccee
Confidence 9999999988874 9999999999999999999999999988876 676655555544
No 65
>KOG1125 consensus TPR repeat-containing protein [General function prediction only]
Probab=99.81 E-value=1.9e-18 Score=174.82 Aligned_cols=257 Identities=18% Similarity=0.232 Sum_probs=212.6
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcC
Q 003563 36 MLGEASLQYAYGNFEQAISLLKEVVRLSPNLPETYNTLGLAHSALGNHKSAFDFYVIAAHLSPKDSALWKQLLTFAVQKG 115 (810)
Q Consensus 36 ~l~~a~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~p~~~~~~~~la~~~~~~g 115 (810)
-|..|..+++.|+..+|.-.|+.++..+|.+.++|..||.+....++-..|+..++++++++|++.+++..||..|...|
T Consensus 288 Pf~eG~~lm~nG~L~~A~LafEAAVkqdP~haeAW~~LG~~qaENE~E~~ai~AL~rcl~LdP~NleaLmaLAVSytNeg 367 (579)
T KOG1125|consen 288 PFKEGCNLMKNGDLSEAALAFEAAVKQDPQHAEAWQKLGITQAENENEQNAISALRRCLELDPTNLEALMALAVSYTNEG 367 (579)
T ss_pred hHHHHHHHHhcCCchHHHHHHHHHHhhChHHHHHHHHhhhHhhhccchHHHHHHHHHHHhcCCccHHHHHHHHHHHhhhh
Confidence 47889999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CHHHHHHHHHHHHHcCCCCHHHHHH-------HHHHHHHcCCHHHHHHHHHHHHHhCC--CCHHHHHHHHHHHHHcCChH
Q 003563 116 DTAQAMYYIRQAIRAEPKDISLRIH-------LASFYVEIGDYEKAAESYEQIQKLFP--DNVDATKTGAQLFLKCGQTA 186 (810)
Q Consensus 116 ~~~~A~~~~~~al~~~p~~~~~~~~-------la~~~~~~g~~~~A~~~~~~~l~~~p--~~~~~~~~la~~~~~~g~~~ 186 (810)
.-.+|+.++.+-+...|........ ...-......+..-.+.|-.+....| .++++...||.+|...|+|+
T Consensus 368 ~q~~Al~~L~~Wi~~~p~y~~l~~a~~~~~~~~~~s~~~~~~l~~i~~~fLeaa~~~~~~~DpdvQ~~LGVLy~ls~efd 447 (579)
T KOG1125|consen 368 LQNQALKMLDKWIRNKPKYVHLVSAGENEDFENTKSFLDSSHLAHIQELFLEAARQLPTKIDPDVQSGLGVLYNLSGEFD 447 (579)
T ss_pred hHHHHHHHHHHHHHhCccchhccccCccccccCCcCCCCHHHHHHHHHHHHHHHHhCCCCCChhHHhhhHHHHhcchHHH
Confidence 9999999999999877644321110 00011111224455667777777888 68999999999999999999
Q ss_pred HHHHHHHHHHhhCCCCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhcCCCCCcHHHHHHHHHHHHhcCCHHHHHHHH
Q 003563 187 RSIGILEEYLKVHPSDADLSVIDLLVAILMENNAYEKTLQHIEHAQIVRFSGKELPLKLKVKAGICYLRLGNMEKAEILF 266 (810)
Q Consensus 187 ~A~~~~~~~l~~~p~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~ 266 (810)
+|+.+|+.++...|++.. .|+.||-.+....+..+|+..|.+++++ .|..+.+++++|.+++.+|.|++|..+|
T Consensus 448 raiDcf~~AL~v~Pnd~~--lWNRLGAtLAN~~~s~EAIsAY~rALqL----qP~yVR~RyNlgIS~mNlG~ykEA~~hl 521 (579)
T KOG1125|consen 448 RAVDCFEAALQVKPNDYL--LWNRLGATLANGNRSEEAISAYNRALQL----QPGYVRVRYNLGISCMNLGAYKEAVKHL 521 (579)
T ss_pred HHHHHHHHHHhcCCchHH--HHHHhhHHhcCCcccHHHHHHHHHHHhc----CCCeeeeehhhhhhhhhhhhHHHHHHHH
Confidence 999999999999999876 8999999999999999999999999999 7888999999999999999999999999
Q ss_pred HHhhccCCc-----h----hHhHHHHHHHHHHHcCCcHHHH
Q 003563 267 ADLQWKNAI-----D----HADLITEVADTLMSLGHSNSAL 298 (810)
Q Consensus 267 ~~~~~~~~~-----~----~~~~~~~la~~~~~~~~~~~A~ 298 (810)
-.++...+. + ...+|..|-.++...++.+-+.
T Consensus 522 L~AL~mq~ks~~~~~~~~~se~iw~tLR~als~~~~~D~l~ 562 (579)
T KOG1125|consen 522 LEALSMQRKSRNHNKAPMASENIWQTLRLALSAMNRSDLLQ 562 (579)
T ss_pred HHHHHhhhcccccccCCcchHHHHHHHHHHHHHcCCchHHH
Confidence 988764332 0 1235555555555555555433
No 66
>KOG1915 consensus Cell cycle control protein (crooked neck) [Cell cycle control, cell division, chromosome partitioning]
Probab=99.80 E-value=1.2e-14 Score=143.15 Aligned_cols=467 Identities=14% Similarity=0.067 Sum_probs=230.4
Q ss_pred HHHhCCCChHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHHHH
Q 003563 59 VVRLSPNLPETYNTLGLAHSALGNHKSAFDFYVIAAHLSPKDSALWKQLLTFAVQKGDTAQAMYYIRQAIRAEPKDISLR 138 (810)
Q Consensus 59 ~l~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~ 138 (810)
.++.+.-+...|...|.--..++++..|...|++|+..+..+...|...+.+-++......|...+++++..-|.-...|
T Consensus 65 ~irrnR~~~~~WikYaqwEesq~e~~RARSv~ERALdvd~r~itLWlkYae~Emknk~vNhARNv~dRAvt~lPRVdqlW 144 (677)
T KOG1915|consen 65 QIRRNRLNMQVWIKYAQWEESQKEIQRARSVFERALDVDYRNITLWLKYAEFEMKNKQVNHARNVWDRAVTILPRVDQLW 144 (677)
T ss_pred HHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHhcccccchHHHHHHHHHHhhhhHhHHHHHHHHHHHhcchHHHHH
Confidence 33333334445555555555555555555555555555555555555555555555555555555555555555555555
Q ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHhhCCCCCChHHHHHHHHHHHHc
Q 003563 139 IHLASFYVEIGDYEKAAESYEQIQKLFPDNVDATKTGAQLFLKCGQTARSIGILEEYLKVHPSDADLSVIDLLVAILMEN 218 (810)
Q Consensus 139 ~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~~~la~~~~~~ 218 (810)
+....+-..+|+...|.++|++-+...|+ ..+|......-.+.+..+.|..+|++.+-.+|+-. .|...+..-.+.
T Consensus 145 yKY~ymEE~LgNi~gaRqiferW~~w~P~-eqaW~sfI~fElRykeieraR~IYerfV~~HP~v~---~wikyarFE~k~ 220 (677)
T KOG1915|consen 145 YKYIYMEEMLGNIAGARQIFERWMEWEPD-EQAWLSFIKFELRYKEIERARSIYERFVLVHPKVS---NWIKYARFEEKH 220 (677)
T ss_pred HHHHHHHHHhcccHHHHHHHHHHHcCCCc-HHHHHHHHHHHHHhhHHHHHHHHHHHHheecccHH---HHHHHHHHHHhc
Confidence 55555555555555555555555555542 34444444444555555555555555554444322 344555555555
Q ss_pred CCHHHHHHHHHHHHHHhcCCCCCcHHHHHHHHHHHHhcCCHHHHHHHHHHhhccCCchhHh-HHHHHHHHHHHcCCc---
Q 003563 219 NAYEKTLQHIEHAQIVRFSGKELPLKLKVKAGICYLRLGNMEKAEILFADLQWKNAIDHAD-LITEVADTLMSLGHS--- 294 (810)
Q Consensus 219 g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~~-~~~~la~~~~~~~~~--- 294 (810)
|+..-|..+|+++++.++. +.....+....+..-..+..++.|..+|+-++..-|..... ++......--+-|+.
T Consensus 221 g~~~~aR~VyerAie~~~~-d~~~e~lfvaFA~fEe~qkE~ERar~iykyAld~~pk~raeeL~k~~~~fEKqfGd~~gI 299 (677)
T KOG1915|consen 221 GNVALARSVYERAIEFLGD-DEEAEILFVAFAEFEERQKEYERARFIYKYALDHIPKGRAEELYKKYTAFEKQFGDKEGI 299 (677)
T ss_pred CcHHHHHHHHHHHHHHhhh-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCcccHHHHHHHHHHHHHHhcchhhh
Confidence 5555555555555554332 11122233334444444455555555555555544432222 222222222222322
Q ss_pred HHHHH-----HHHHHHhccCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHhhcCCC---------HHHHHHHHH-HHHH
Q 003563 295 NSALK-----YYHFLETNAGTDNGYLYLKLAECYLSLKERAHAIMFFYKALDRFEDN---------IDARLTLAS-LLLE 359 (810)
Q Consensus 295 ~~A~~-----~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~---------~~~~~~la~-~~~~ 359 (810)
++++. .|+..+.. +|.+-++|+.+-.+-...|+.+.-.+.|++|+...|.. .-.|.+.+. .-..
T Consensus 300 Ed~Iv~KRk~qYE~~v~~-np~nYDsWfdylrL~e~~g~~~~Ire~yErAIanvpp~~ekr~W~RYIYLWinYalyeEle 378 (677)
T KOG1915|consen 300 EDAIVGKRKFQYEKEVSK-NPYNYDSWFDYLRLEESVGDKDRIRETYERAIANVPPASEKRYWRRYIYLWINYALYEELE 378 (677)
T ss_pred HHHHhhhhhhHHHHHHHh-CCCCchHHHHHHHHHHhcCCHHHHHHHHHHHHccCCchhHHHHHHHHHHHHHHHHHHHHHH
Confidence 12211 23333332 45555555555555555555555555555555544422 111222211 1122
Q ss_pred cCCHHHHHHhcCCCCCCCcccCCCCCCChhhhHHHHHHHHHHHHHhcCCchhHHhhhhhhhhhhHHHHHHHHHhhhhhcc
Q 003563 360 EAKEEEAITLLSPPKDLDSLDMNSDKSNPWWLNEKIIMKLCHIYRAKGMPEDFVDAIFPLVCESLCVEALRQKVKVKRRL 439 (810)
Q Consensus 360 ~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~~~~~~~~ 439 (810)
..+.+.+.+.|+.++++-|... +.-..++...|.....+.+...|.+.+-.++-..++.
T Consensus 379 ~ed~ertr~vyq~~l~lIPHkk--------FtFaKiWlmyA~feIRq~~l~~ARkiLG~AIG~cPK~------------- 437 (677)
T KOG1915|consen 379 AEDVERTRQVYQACLDLIPHKK--------FTFAKIWLMYAQFEIRQLNLTGARKILGNAIGKCPKD------------- 437 (677)
T ss_pred hhhHHHHHHHHHHHHhhcCccc--------chHHHHHHHHHHHHHHHcccHHHHHHHHHHhccCCch-------------
Confidence 3455555555555555554321 1122344444444445555555555554444332221
Q ss_pred chhhHHHHHhHhcCCCCCccccCCCCCCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccccCCCCCCchhhhhccCC
Q 003563 440 TKGILQQRTKIYNNLPTDSILCGIRPAAPKSELLVAARARKKIQKKEALKEEKKALAKAAGVEWHSDDTDDESQQEAFRE 519 (810)
Q Consensus 440 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 519 (810)
.+|.|+..+.. .+..-.|-++.-.+.
T Consensus 438 ------------------KlFk~YIelEl--qL~efDRcRkLYEkf---------------------------------- 463 (677)
T KOG1915|consen 438 ------------------KLFKGYIELEL--QLREFDRCRKLYEKF---------------------------------- 463 (677)
T ss_pred ------------------hHHHHHHHHHH--HHhhHHHHHHHHHHH----------------------------------
Confidence 01111110000 000011111111000
Q ss_pred CCCCCCCCchhhHHHHHHHHHHHHhhhcHHHHHHHHHHHHhhhhccCChhHHHHHHHhhhhhhccccCCchhHHHHHHHH
Q 003563 520 PPLPNLLKNEENQCLIIDLCKALASLQRYEEASEIINLSMRLAYNILPLEKKEELRSLGAKMAYDSTDPNHGFDCAKYIL 599 (810)
Q Consensus 520 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~eA~~~~~~al~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~a~~~~r~~~ 599 (810)
+...|++..+...+|..-..+|..+.|..+++-|+..+.. +....|.-..+..-+..|.++.|-..++.++
T Consensus 464 -----le~~Pe~c~~W~kyaElE~~LgdtdRaRaifelAi~qp~l----dmpellwkaYIdFEi~~~E~ekaR~LYerlL 534 (677)
T KOG1915|consen 464 -----LEFSPENCYAWSKYAELETSLGDTDRARAIFELAISQPAL----DMPELLWKAYIDFEIEEGEFEKARALYERLL 534 (677)
T ss_pred -----HhcChHhhHHHHHHHHHHHHhhhHHHHHHHHHHHhcCccc----ccHHHHHHHhhhhhhhcchHHHHHHHHHHHH
Confidence 1135677778888999999999999999999999853221 2222222234444556789999999999999
Q ss_pred HhCCCChhHhHHHHHHH
Q 003563 600 QLHPYSLSAWNCYYKVL 616 (810)
Q Consensus 600 ~~~p~~~~~~~~~~~~~ 616 (810)
+..+... .|.-|...-
T Consensus 535 ~rt~h~k-vWisFA~fe 550 (677)
T KOG1915|consen 535 DRTQHVK-VWISFAKFE 550 (677)
T ss_pred Hhcccch-HHHhHHHHh
Confidence 9998876 998886543
No 67
>COG3063 PilF Tfp pilus assembly protein PilF [Cell motility and secretion / Intracellular trafficking and secretion]
Probab=99.79 E-value=9.8e-17 Score=143.99 Aligned_cols=209 Identities=21% Similarity=0.218 Sum_probs=180.4
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHhhCCCCCChHHHHHHHHHH
Q 003563 136 SLRIHLASFYVEIGDYEKAAESYEQIQKLFPDNVDATKTGAQLFLKCGQTARSIGILEEYLKVHPSDADLSVIDLLVAIL 215 (810)
Q Consensus 136 ~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~~~la~~~ 215 (810)
.+...+|.-|+..|++..|...++++++.+|++..+|..+|.+|...|+.+.|.+.|+++++++|++.+ ++++.|..+
T Consensus 36 ~arlqLal~YL~~gd~~~A~~nlekAL~~DPs~~~a~~~~A~~Yq~~Ge~~~A~e~YrkAlsl~p~~Gd--VLNNYG~FL 113 (250)
T COG3063 36 KARLQLALGYLQQGDYAQAKKNLEKALEHDPSYYLAHLVRAHYYQKLGENDLADESYRKALSLAPNNGD--VLNNYGAFL 113 (250)
T ss_pred HHHHHHHHHHHHCCCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHcCChhhHHHHHHHHHhcCCCccc--hhhhhhHHH
Confidence 467788888999999999999999999999999999999999999999999999999999999999887 888999999
Q ss_pred HHcCCHHHHHHHHHHHHHHhcCCCCCcHHHHHHHHHHHHhcCCHHHHHHHHHHhhccCCchhHhHHHHHHHHHHHcCCcH
Q 003563 216 MENNAYEKTLQHIEHAQIVRFSGKELPLKLKVKAGICYLRLGNMEKAEILFADLQWKNAIDHADLITEVADTLMSLGHSN 295 (810)
Q Consensus 216 ~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~ 295 (810)
+.+|++++|...|++++.. +..+.+...+.++|.|..+.|+++.|...|++++..+|. .+.....++..+++.|++.
T Consensus 114 C~qg~~~eA~q~F~~Al~~--P~Y~~~s~t~eN~G~Cal~~gq~~~A~~~l~raL~~dp~-~~~~~l~~a~~~~~~~~y~ 190 (250)
T COG3063 114 CAQGRPEEAMQQFERALAD--PAYGEPSDTLENLGLCALKAGQFDQAEEYLKRALELDPQ-FPPALLELARLHYKAGDYA 190 (250)
T ss_pred HhCCChHHHHHHHHHHHhC--CCCCCcchhhhhhHHHHhhcCCchhHHHHHHHHHHhCcC-CChHHHHHHHHHHhcccch
Confidence 9999999999999998865 335667788889999999999999999999999888885 8888899999999999999
Q ss_pred HHHHHHHHHHhccCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHhhcCCCHHHH
Q 003563 296 SALKYYHFLETNAGTDNGYLYLKLAECYLSLKERAHAIMFFYKALDRFEDNIDAR 350 (810)
Q Consensus 296 ~A~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~ 350 (810)
.|..+++..... .+.....+....++-...|+-+.|-.+=.+.....|...+..
T Consensus 191 ~Ar~~~~~~~~~-~~~~A~sL~L~iriak~~gd~~~a~~Y~~qL~r~fP~s~e~q 244 (250)
T COG3063 191 PARLYLERYQQR-GGAQAESLLLGIRIAKRLGDRAAAQRYQAQLQRLFPYSEEYQ 244 (250)
T ss_pred HHHHHHHHHHhc-ccccHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCCcHHHH
Confidence 999999988866 446667777777888889999999888888888899887654
No 68
>PRK11189 lipoprotein NlpI; Provisional
Probab=99.78 E-value=1.5e-16 Score=161.35 Aligned_cols=242 Identities=16% Similarity=0.109 Sum_probs=174.0
Q ss_pred CChHHHHHHHHHHHhcCC---C-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHcCCHHHHHH
Q 003563 81 GNHKSAFDFYVIAAHLSP---K-DSALWKQLLTFAVQKGDTAQAMYYIRQAIRAEPKDISLRIHLASFYVEIGDYEKAAE 156 (810)
Q Consensus 81 g~~~~A~~~~~~a~~~~p---~-~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~ 156 (810)
+..+.++..+.+++...| . .+..|+.+|.++...|++++|+..|+++++.+|+++.++..+|.++...|++++|+.
T Consensus 40 ~~~e~~i~~~~~~l~~~~~~~~~~a~~~~~~g~~~~~~g~~~~A~~~~~~Al~l~P~~~~a~~~lg~~~~~~g~~~~A~~ 119 (296)
T PRK11189 40 LQQEVILARLNQILASRDLTDEERAQLHYERGVLYDSLGLRALARNDFSQALALRPDMADAYNYLGIYLTQAGNFDAAYE 119 (296)
T ss_pred hHHHHHHHHHHHHHccccCCcHhhHHHHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHCCCHHHHHH
Confidence 467778888888886443 3 367799999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHhCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHhhCCCCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhc
Q 003563 157 SYEQIQKLFPDNVDATKTGAQLFLKCGQTARSIGILEEYLKVHPSDADLSVIDLLVAILMENNAYEKTLQHIEHAQIVRF 236 (810)
Q Consensus 157 ~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~ 236 (810)
.|+++++++|++..++.++|.++...|++++|++.++++++.+|+++.. .....+....+++++|+..+.+.....+
T Consensus 120 ~~~~Al~l~P~~~~a~~~lg~~l~~~g~~~eA~~~~~~al~~~P~~~~~---~~~~~l~~~~~~~~~A~~~l~~~~~~~~ 196 (296)
T PRK11189 120 AFDSVLELDPTYNYAYLNRGIALYYGGRYELAQDDLLAFYQDDPNDPYR---ALWLYLAESKLDPKQAKENLKQRYEKLD 196 (296)
T ss_pred HHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHH---HHHHHHHHccCCHHHHHHHHHHHHhhCC
Confidence 9999999999999999999999999999999999999999999988631 1222344557789999999977664411
Q ss_pred CCCCCcHHHHHHHHHHHHhcCCHHHHHHHHHHhhccCCchhHhHHHHHHHHHHHcCCcHHHHHHHHHHHhccCCCCHHHH
Q 003563 237 SGKELPLKLKVKAGICYLRLGNMEKAEILFADLQWKNAIDHADLITEVADTLMSLGHSNSALKYYHFLETNAGTDNGYLY 316 (810)
Q Consensus 237 ~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~ 316 (810)
+ . .+ ..+.+....|+..++ ..++.+...... . ... .|..+.+|
T Consensus 197 ---~-~--~~-~~~~~~~~lg~~~~~-~~~~~~~~~~~~-~---------------------------~~l-~~~~~ea~ 239 (296)
T PRK11189 197 ---K-E--QW-GWNIVEFYLGKISEE-TLMERLKAGATD-N---------------------------TEL-AERLCETY 239 (296)
T ss_pred ---c-c--cc-HHHHHHHHccCCCHH-HHHHHHHhcCCC-c---------------------------HHH-HHHHHHHH
Confidence 1 1 11 134445555655433 233332211100 0 011 22345566
Q ss_pred HHHHHHHHHccCHHHHHHHHHHHHhhcC-CCHHHHHHHHHHHHHcCC
Q 003563 317 LKLAECYLSLKERAHAIMFFYKALDRFE-DNIDARLTLASLLLEEAK 362 (810)
Q Consensus 317 ~~la~~~~~~g~~~~A~~~~~~al~~~p-~~~~~~~~la~~~~~~g~ 362 (810)
+.+|.++...|++++|+.+|+++++.+| ++++..+.+..+....++
T Consensus 240 ~~Lg~~~~~~g~~~~A~~~~~~Al~~~~~~~~e~~~~~~e~~~~~~~ 286 (296)
T PRK11189 240 FYLAKYYLSLGDLDEAAALFKLALANNVYNFVEHRYALLELALLGQD 286 (296)
T ss_pred HHHHHHHHHCCCHHHHHHHHHHHHHhCCchHHHHHHHHHHHHHHHhh
Confidence 6777777777777777777777777664 556666655555544443
No 69
>COG2956 Predicted N-acetylglucosaminyl transferase [Carbohydrate transport and metabolism]
Probab=99.78 E-value=1.1e-15 Score=143.56 Aligned_cols=268 Identities=18% Similarity=0.107 Sum_probs=224.4
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCCC-----HHHHHHHHH
Q 003563 35 KMLGEASLQYAYGNFEQAISLLKEVVRLSPNLPETYNTLGLAHSALGNHKSAFDFYVIAAHLSPKD-----SALWKQLLT 109 (810)
Q Consensus 35 ~~l~~a~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~p~~-----~~~~~~la~ 109 (810)
.-+-.|..+.-..+.++|+..|-++++.+|...+++..||..|...|..+.|+..-+..+. .|+. ..+...+|.
T Consensus 37 r~Yv~GlNfLLs~Q~dKAvdlF~e~l~~d~~t~e~~ltLGnLfRsRGEvDRAIRiHQ~L~~-spdlT~~qr~lAl~qL~~ 115 (389)
T COG2956 37 RDYVKGLNFLLSNQPDKAVDLFLEMLQEDPETFEAHLTLGNLFRSRGEVDRAIRIHQTLLE-SPDLTFEQRLLALQQLGR 115 (389)
T ss_pred HHHHhHHHHHhhcCcchHHHHHHHHHhcCchhhHHHHHHHHHHHhcchHHHHHHHHHHHhc-CCCCchHHHHHHHHHHHH
Confidence 3466778888899999999999999999999999999999999999999999998876654 4543 346788999
Q ss_pred HHHHcCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCH-----HHHHHHHHHHHHcCC
Q 003563 110 FAVQKGDTAQAMYYIRQAIRAEPKDISLRIHLASFYVEIGDYEKAAESYEQIQKLFPDNV-----DATKTGAQLFLKCGQ 184 (810)
Q Consensus 110 ~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~-----~~~~~la~~~~~~g~ 184 (810)
-|+..|-++.|...|....+...--..++..+..+|....++++|++.-++..++.+... ..+..+|..+....+
T Consensus 116 Dym~aGl~DRAE~~f~~L~de~efa~~AlqqLl~IYQ~treW~KAId~A~~L~k~~~q~~~~eIAqfyCELAq~~~~~~~ 195 (389)
T COG2956 116 DYMAAGLLDRAEDIFNQLVDEGEFAEGALQQLLNIYQATREWEKAIDVAERLVKLGGQTYRVEIAQFYCELAQQALASSD 195 (389)
T ss_pred HHHHhhhhhHHHHHHHHHhcchhhhHHHHHHHHHHHHHhhHHHHHHHHHHHHHHcCCccchhHHHHHHHHHHHHHhhhhh
Confidence 999999999999999999876666678899999999999999999999999999888753 456778888888899
Q ss_pred hHHHHHHHHHHHhhCCCCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhcCCCCCcHHHHHHHHHHHHhcCCHHHHHH
Q 003563 185 TARSIGILEEYLKVHPSDADLSVIDLLVAILMENNAYEKTLQHIEHAQIVRFSGKELPLKLKVKAGICYLRLGNMEKAEI 264 (810)
Q Consensus 185 ~~~A~~~~~~~l~~~p~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~ 264 (810)
.+.|+..+.++++.+|+... +-..+|.++...|+|+.|++.++.+.+.. ......+.-.+..||..+|+.++...
T Consensus 196 ~d~A~~~l~kAlqa~~~cvR--Asi~lG~v~~~~g~y~~AV~~~e~v~eQn---~~yl~evl~~L~~~Y~~lg~~~~~~~ 270 (389)
T COG2956 196 VDRARELLKKALQADKKCVR--ASIILGRVELAKGDYQKAVEALERVLEQN---PEYLSEVLEMLYECYAQLGKPAEGLN 270 (389)
T ss_pred HHHHHHHHHHHHhhCcccee--hhhhhhHHHHhccchHHHHHHHHHHHHhC---hHHHHHHHHHHHHHHHHhCCHHHHHH
Confidence 99999999999999999987 45589999999999999999999998872 23445777788889999999999999
Q ss_pred HHHHhhccCCchhHhHHHHHHHHHHHcCCcHHHHHHHHHHHhccCCC
Q 003563 265 LFADLQWKNAIDHADLITEVADTLMSLGHSNSALKYYHFLETNAGTD 311 (810)
Q Consensus 265 ~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~ 311 (810)
.+.++....+ .+++...++.......-.+.|..++.+-+.. .|.
T Consensus 271 fL~~~~~~~~--g~~~~l~l~~lie~~~G~~~Aq~~l~~Ql~r-~Pt 314 (389)
T COG2956 271 FLRRAMETNT--GADAELMLADLIELQEGIDAAQAYLTRQLRR-KPT 314 (389)
T ss_pred HHHHHHHccC--CccHHHHHHHHHHHhhChHHHHHHHHHHHhh-CCc
Confidence 9998877665 4566667777777777778888777776654 444
No 70
>KOG1125 consensus TPR repeat-containing protein [General function prediction only]
Probab=99.77 E-value=5.3e-17 Score=164.53 Aligned_cols=262 Identities=14% Similarity=0.108 Sum_probs=213.7
Q ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCC
Q 003563 105 KQLLTFAVQKGDTAQAMYYIRQAIRAEPKDISLRIHLASFYVEIGDYEKAAESYEQIQKLFPDNVDATKTGAQLFLKCGQ 184 (810)
Q Consensus 105 ~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~ 184 (810)
+..|..+++.|+..+|.-+|+.+++.+|.+.++|..||.+....++-..|+..++++++++|++.+++..||..|...|.
T Consensus 289 f~eG~~lm~nG~L~~A~LafEAAVkqdP~haeAW~~LG~~qaENE~E~~ai~AL~rcl~LdP~NleaLmaLAVSytNeg~ 368 (579)
T KOG1125|consen 289 FKEGCNLMKNGDLSEAALAFEAAVKQDPQHAEAWQKLGITQAENENEQNAISALRRCLELDPTNLEALMALAVSYTNEGL 368 (579)
T ss_pred HHHHHHHHhcCCchHHHHHHHHHHhhChHHHHHHHHhhhHhhhccchHHHHHHHHHHHhcCCccHHHHHHHHHHHhhhhh
Confidence 56788999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hHHHHHHHHHHHhhCCCCCChHH-----HHHHHHHHHHcCCHHHHHHHHHHHHHHhcCCCCCcHHHHHHHHHHHHhcCCH
Q 003563 185 TARSIGILEEYLKVHPSDADLSV-----IDLLVAILMENNAYEKTLQHIEHAQIVRFSGKELPLKLKVKAGICYLRLGNM 259 (810)
Q Consensus 185 ~~~A~~~~~~~l~~~p~~~~~~~-----~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~ 259 (810)
-.+|..++.+.+...|...-... ......-......+..-.+.|-.+....+ ...++++...||.+|.-.|+|
T Consensus 369 q~~Al~~L~~Wi~~~p~y~~l~~a~~~~~~~~~~s~~~~~~l~~i~~~fLeaa~~~~--~~~DpdvQ~~LGVLy~ls~ef 446 (579)
T KOG1125|consen 369 QNQALKMLDKWIRNKPKYVHLVSAGENEDFENTKSFLDSSHLAHIQELFLEAARQLP--TKIDPDVQSGLGVLYNLSGEF 446 (579)
T ss_pred HHHHHHHHHHHHHhCccchhccccCccccccCCcCCCCHHHHHHHHHHHHHHHHhCC--CCCChhHHhhhHHHHhcchHH
Confidence 99999999999887765321000 00000000111122334445555554422 237788999999999999999
Q ss_pred HHHHHHHHHhhccCCchhHhHHHHHHHHHHHcCCcHHHHHHHHHHHhccCCCCHHHHHHHHHHHHHccCHHHHHHHHHHH
Q 003563 260 EKAEILFADLQWKNAIDHADLITEVADTLMSLGHSNSALKYYHFLETNAGTDNGYLYLKLAECYLSLKERAHAIMFFYKA 339 (810)
Q Consensus 260 ~~A~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a 339 (810)
++|+.+|+.++...|. +...|..||-.+....+.++|+..|.+++++ .|....+++++|.++..+|.|++|.++|-.|
T Consensus 447 draiDcf~~AL~v~Pn-d~~lWNRLGAtLAN~~~s~EAIsAY~rALqL-qP~yVR~RyNlgIS~mNlG~ykEA~~hlL~A 524 (579)
T KOG1125|consen 447 DRAVDCFEAALQVKPN-DYLLWNRLGATLANGNRSEEAISAYNRALQL-QPGYVRVRYNLGISCMNLGAYKEAVKHLLEA 524 (579)
T ss_pred HHHHHHHHHHHhcCCc-hHHHHHHhhHHhcCCcccHHHHHHHHHHHhc-CCCeeeeehhhhhhhhhhhhHHHHHHHHHHH
Confidence 9999999999999885 8899999999999999999999999999988 8999999999999999999999999999999
Q ss_pred HhhcCCC----------HHHHHHHHHHHHHcCCHHHHHHhc
Q 003563 340 LDRFEDN----------IDARLTLASLLLEEAKEEEAITLL 370 (810)
Q Consensus 340 l~~~p~~----------~~~~~~la~~~~~~g~~~~A~~~~ 370 (810)
|.+.+.+ ..+|-.|-.++...++.|-+.+..
T Consensus 525 L~mq~ks~~~~~~~~~se~iw~tLR~als~~~~~D~l~~a~ 565 (579)
T KOG1125|consen 525 LSMQRKSRNHNKAPMASENIWQTLRLALSAMNRSDLLQEAA 565 (579)
T ss_pred HHhhhcccccccCCcchHHHHHHHHHHHHHcCCchHHHHhc
Confidence 9886641 257777777777888877665544
No 71
>KOG2376 consensus Signal recognition particle, subunit Srp72 [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.77 E-value=1.7e-14 Score=146.43 Aligned_cols=367 Identities=14% Similarity=0.149 Sum_probs=255.4
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCCCHHHHHHHHHHHHH
Q 003563 34 TKMLGEASLQYAYGNFEQAISLLKEVVRLSPNLPETYNTLGLAHSALGNHKSAFDFYVIAAHLSPKDSALWKQLLTFAVQ 113 (810)
Q Consensus 34 ~~~l~~a~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~p~~~~~~~~la~~~~~ 113 (810)
..++..-+.+...|+|++|.....+++...|+++.+....-.+..+.++|++|+...++-..... .....+.-|.|.++
T Consensus 13 ~~l~t~ln~~~~~~e~e~a~k~~~Kil~~~pdd~~a~~cKvValIq~~ky~~ALk~ikk~~~~~~-~~~~~fEKAYc~Yr 91 (652)
T KOG2376|consen 13 EALLTDLNRHGKNGEYEEAVKTANKILSIVPDDEDAIRCKVVALIQLDKYEDALKLIKKNGALLV-INSFFFEKAYCEYR 91 (652)
T ss_pred HHHHHHHHHhccchHHHHHHHHHHHHHhcCCCcHhhHhhhHhhhhhhhHHHHHHHHHHhcchhhh-cchhhHHHHHHHHH
Confidence 57788888899999999999999999999999999999999999999999999966554322111 12223788999999
Q ss_pred cCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCChHHHHHHHH
Q 003563 114 KGDTAQAMYYIRQAIRAEPKDISLRIHLASFYVEIGDYEKAAESYEQIQKLFPDNVDATKTGAQLFLKCGQTARSIGILE 193 (810)
Q Consensus 114 ~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~ 193 (810)
++..++|+.+++ ..++.+..+....|.+++++|+|++|+.+|+.+.+.+.++.+........-.... -.+ . ..
T Consensus 92 lnk~Dealk~~~---~~~~~~~~ll~L~AQvlYrl~~ydealdiY~~L~kn~~dd~d~~~r~nl~a~~a~--l~~-~-~~ 164 (652)
T KOG2376|consen 92 LNKLDEALKTLK---GLDRLDDKLLELRAQVLYRLERYDEALDIYQHLAKNNSDDQDEERRANLLAVAAA--LQV-Q-LL 164 (652)
T ss_pred cccHHHHHHHHh---cccccchHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCchHHHHHHHHHHHHHHh--hhH-H-HH
Confidence 999999999999 4567777788999999999999999999999999887776655443332211110 001 1 33
Q ss_pred HHHhhCCCCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHHh----cCCCCC-------cHHHHHHHHHHHHhcCCHHHH
Q 003563 194 EYLKVHPSDADLSVIDLLVAILMENNAYEKTLQHIEHAQIVR----FSGKEL-------PLKLKVKAGICYLRLGNMEKA 262 (810)
Q Consensus 194 ~~l~~~p~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~----~~~~~~-------~~~~~~~la~~~~~~g~~~~A 262 (810)
+.....|.+ ....+++.+.++...|+|.+|++.++++..+. ..++.. -..+...++.++..+|+.++|
T Consensus 165 q~v~~v~e~-syel~yN~Ac~~i~~gky~qA~elL~kA~~~~~e~l~~~d~~eEeie~el~~IrvQlayVlQ~~Gqt~ea 243 (652)
T KOG2376|consen 165 QSVPEVPED-SYELLYNTACILIENGKYNQAIELLEKALRICREKLEDEDTNEEEIEEELNPIRVQLAYVLQLQGQTAEA 243 (652)
T ss_pred HhccCCCcc-hHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHhhcccccchhhHHHHHHHHHHHHHHHHHHhcchHHH
Confidence 334444432 23578999999999999999999999995542 111111 124577889999999999999
Q ss_pred HHHHHHhhccCCchhHhHH---HHHHHHHHHcCCcH-HHHHHHHHHHhc---------cCCCCHHHHHHHHHHHHHccCH
Q 003563 263 EILFADLQWKNAIDHADLI---TEVADTLMSLGHSN-SALKYYHFLETN---------AGTDNGYLYLKLAECYLSLKER 329 (810)
Q Consensus 263 ~~~~~~~~~~~~~~~~~~~---~~la~~~~~~~~~~-~A~~~~~~~~~~---------~~~~~~~~~~~la~~~~~~g~~ 329 (810)
...|..++..++.+.+... .++..+-....-++ .++..++..... .......++.+.+.+.+..+..
T Consensus 244 ~~iy~~~i~~~~~D~~~~Av~~NNLva~~~d~~~~d~~~l~~k~~~~~~l~~~~l~~Ls~~qk~~i~~N~~lL~l~tnk~ 323 (652)
T KOG2376|consen 244 SSIYVDIIKRNPADEPSLAVAVNNLVALSKDQNYFDGDLLKSKKSQVFKLAEFLLSKLSKKQKQAIYRNNALLALFTNKM 323 (652)
T ss_pred HHHHHHHHHhcCCCchHHHHHhcchhhhccccccCchHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHhhhH
Confidence 9999999988876443322 22211111111111 122222221110 1122334556666666777777
Q ss_pred HHHHHHHHHHHhhcCCCHHHHHHHHHHHHHcCCHHHHHHhcCCCCCCCcccCCCCCCChhhhHHHHHHHHHHHHHhcCCc
Q 003563 330 AHAIMFFYKALDRFEDNIDARLTLASLLLEEAKEEEAITLLSPPKDLDSLDMNSDKSNPWWLNEKIIMKLCHIYRAKGMP 409 (810)
Q Consensus 330 ~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~ 409 (810)
+++.+.....-...|...--.........+...+.+|.+++....+.+|... ..+.+.++.+...+|++
T Consensus 324 ~q~r~~~a~lp~~~p~~~~~~ll~~~t~~~~~~~~ka~e~L~~~~~~~p~~s-----------~~v~L~~aQl~is~gn~ 392 (652)
T KOG2376|consen 324 DQVRELSASLPGMSPESLFPILLQEATKVREKKHKKAIELLLQFADGHPEKS-----------KVVLLLRAQLKISQGNP 392 (652)
T ss_pred HHHHHHHHhCCccCchHHHHHHHHHHHHHHHHHHhhhHHHHHHHhccCCchh-----------HHHHHHHHHHHHhcCCH
Confidence 7776666555555555433333344444444478999999999888888753 35888899999999999
Q ss_pred hhHHhhhhhhh
Q 003563 410 EDFVDAIFPLV 420 (810)
Q Consensus 410 ~~A~~~~~~~l 420 (810)
+.|++++..++
T Consensus 393 ~~A~~il~~~~ 403 (652)
T KOG2376|consen 393 EVALEILSLFL 403 (652)
T ss_pred HHHHHHHHHHh
Confidence 99999988665
No 72
>KOG0550 consensus Molecular chaperone (DnaJ superfamily) [Posttranslational modification, protein turnover, chaperones]
Probab=99.76 E-value=2.8e-17 Score=159.14 Aligned_cols=294 Identities=17% Similarity=0.157 Sum_probs=220.7
Q ss_pred HHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCCCHHHHHHHHHH
Q 003563 31 PGVTKMLGEASLQYAYGNFEQAISLLKEVVRLSPNLPETYNTLGLAHSALGNHKSAFDFYVIAAHLSPKDSALWKQLLTF 110 (810)
Q Consensus 31 ~~~~~~l~~a~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~p~~~~~~~~la~~ 110 (810)
........+|..++...+|.+|+..+..++...|+++..|...+.++...|++++|.-..++.+.+.|..+..+...+.+
T Consensus 47 ~~Ae~~k~~gn~~yk~k~Y~nal~~yt~Ai~~~pd~a~yy~nRAa~~m~~~~~~~a~~dar~~~r~kd~~~k~~~r~~~c 126 (486)
T KOG0550|consen 47 QQAEEAKEEGNAFYKQKTYGNALKNYTFAIDMCPDNASYYSNRAATLMMLGRFEEALGDARQSVRLKDGFSKGQLREGQC 126 (486)
T ss_pred HHHHHHHhhcchHHHHhhHHHHHHHHHHHHHhCccchhhhchhHHHHHHHHhHhhcccchhhheecCCCccccccchhhh
Confidence 35667788999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHcCCHHHHHHHHHHHH------------HcC------CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHH
Q 003563 111 AVQKGDTAQAMYYIRQAI------------RAE------PKDISLRIHLASFYVEIGDYEKAAESYEQIQKLFPDNVDAT 172 (810)
Q Consensus 111 ~~~~g~~~~A~~~~~~al------------~~~------p~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~ 172 (810)
+...++..+|...++..- .+- |.-..+....+.|+...|++++|...--..+++++.+.+++
T Consensus 127 ~~a~~~~i~A~~~~~~~~~~~~anal~~~~~~~~s~s~~pac~~a~~lka~cl~~~~~~~~a~~ea~~ilkld~~n~~al 206 (486)
T KOG0550|consen 127 HLALSDLIEAEEKLKSKQAYKAANALPTLEKLAPSHSREPACFKAKLLKAECLAFLGDYDEAQSEAIDILKLDATNAEAL 206 (486)
T ss_pred hhhhHHHHHHHHHhhhhhhhHHhhhhhhhhcccccccCCchhhHHHHhhhhhhhhcccchhHHHHHHHHHhcccchhHHH
Confidence 999998888876665211 011 22233455677888888888888888888888888888888
Q ss_pred HHHHHHHHHcCChHHHHHHHHHHHhhCCCCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhcCCCCCcHHHHHHHHHH
Q 003563 173 KTGAQLFLKCGQTARSIGILEEYLKVHPSDADLSVIDLLVAILMENNAYEKTLQHIEHAQIVRFSGKELPLKLKVKAGIC 252 (810)
Q Consensus 173 ~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~la~~ 252 (810)
+..|.++...++.+.|+..|++++.++|+......... .+.....+-.-|.-
T Consensus 207 ~vrg~~~yy~~~~~ka~~hf~qal~ldpdh~~sk~~~~----------------------------~~k~le~~k~~gN~ 258 (486)
T KOG0550|consen 207 YVRGLCLYYNDNADKAINHFQQALRLDPDHQKSKSASM----------------------------MPKKLEVKKERGND 258 (486)
T ss_pred HhcccccccccchHHHHHHHhhhhccChhhhhHHhHhh----------------------------hHHHHHHHHhhhhh
Confidence 88888888888888888888888888887654211100 01111223344555
Q ss_pred HHhcCCHHHHHHHHHHhhccCCc---hhHhHHHHHHHHHHHcCCcHHHHHHHHHHHhccCCCCHHHHHHHHHHHHHccCH
Q 003563 253 YLRLGNMEKAEILFADLQWKNAI---DHADLITEVADTLMSLGHSNSALKYYHFLETNAGTDNGYLYLKLAECYLSLKER 329 (810)
Q Consensus 253 ~~~~g~~~~A~~~~~~~~~~~~~---~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~ 329 (810)
.++.|++.+|.++|..++..+|. .....|.+.+.+....|+..+|+...+.++.+ ++....++...|.|+..+++|
T Consensus 259 ~fk~G~y~~A~E~Yteal~idP~n~~~naklY~nra~v~~rLgrl~eaisdc~~Al~i-D~syikall~ra~c~l~le~~ 337 (486)
T KOG0550|consen 259 AFKNGNYRKAYECYTEALNIDPSNKKTNAKLYGNRALVNIRLGRLREAISDCNEALKI-DSSYIKALLRRANCHLALEKW 337 (486)
T ss_pred HhhccchhHHHHHHHHhhcCCccccchhHHHHHHhHhhhcccCCchhhhhhhhhhhhc-CHHHHHHHHHHHHHHHHHHHH
Confidence 56666666666666666666553 24455677777777777777777777777766 667777777777777777777
Q ss_pred HHHHHHHHHHHhhcCCCHHHHHHHH
Q 003563 330 AHAIMFFYKALDRFEDNIDARLTLA 354 (810)
Q Consensus 330 ~~A~~~~~~al~~~p~~~~~~~~la 354 (810)
++|++.|+++++...+ .+....+.
T Consensus 338 e~AV~d~~~a~q~~~s-~e~r~~l~ 361 (486)
T KOG0550|consen 338 EEAVEDYEKAMQLEKD-CEIRRTLR 361 (486)
T ss_pred HHHHHHHHHHHhhccc-cchHHHHH
Confidence 7777777777776655 33333333
No 73
>TIGR02521 type_IV_pilW type IV pilus biogenesis/stability protein PilW. Members of this family are designated PilF in ref (PubMed:8973346) and PilW in ref (PubMed:15612916). This outer membrane protein is required both for pilus stability and for pilus function such as adherence to human cells. Members of this family contain copies of the TPR (tetratricopeptide repeat) domain.
Probab=99.76 E-value=2.8e-16 Score=155.86 Aligned_cols=200 Identities=19% Similarity=0.187 Sum_probs=177.2
Q ss_pred ChHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHH
Q 003563 66 LPETYNTLGLAHSALGNHKSAFDFYVIAAHLSPKDSALWKQLLTFAVQKGDTAQAMYYIRQAIRAEPKDISLRIHLASFY 145 (810)
Q Consensus 66 ~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~ 145 (810)
.+..+..+|.++...|++++|+..+++++..+|.+..++..+|.++...|++++|+..++++++..|.+..++..+|.++
T Consensus 30 ~~~~~~~la~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~ 109 (234)
T TIGR02521 30 AAKIRVQLALGYLEQGDLEVAKENLDKALEHDPDDYLAYLALALYYQQLGELEKAEDSFRRALTLNPNNGDVLNNYGTFL 109 (234)
T ss_pred HHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHH
Confidence 46788899999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHcCCHHHHHHHHHHHHHhC--CCCHHHHHHHHHHHHHcCChHHHHHHHHHHHhhCCCCCChHHHHHHHHHHHHcCCHHH
Q 003563 146 VEIGDYEKAAESYEQIQKLF--PDNVDATKTGAQLFLKCGQTARSIGILEEYLKVHPSDADLSVIDLLVAILMENNAYEK 223 (810)
Q Consensus 146 ~~~g~~~~A~~~~~~~l~~~--p~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~~~la~~~~~~g~~~~ 223 (810)
...|++++|+..+++++... |.....+..+|.++...|++++|...+.++++..|++.. .+..++.++...|++++
T Consensus 110 ~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~--~~~~la~~~~~~~~~~~ 187 (234)
T TIGR02521 110 CQQGKYEQAMQQFEQAIEDPLYPQPARSLENAGLCALKAGDFDKAEKYLTRALQIDPQRPE--SLLELAELYYLRGQYKD 187 (234)
T ss_pred HHcccHHHHHHHHHHHHhccccccchHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcCChH--HHHHHHHHHHHcCCHHH
Confidence 99999999999999998753 455678888999999999999999999999999888765 67889999999999999
Q ss_pred HHHHHHHHHHHhcCCCCCcHHHHHHHHHHHHhcCCHHHHHHHHHHhhc
Q 003563 224 TLQHIEHAQIVRFSGKELPLKLKVKAGICYLRLGNMEKAEILFADLQW 271 (810)
Q Consensus 224 A~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~ 271 (810)
|...+++++.. .+.....+...+.++...|+.++|..+.+.+..
T Consensus 188 A~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~ 231 (234)
T TIGR02521 188 ARAYLERYQQT----YNQTAESLWLGIRIARALGDVAAAQRYGAQLQK 231 (234)
T ss_pred HHHHHHHHHHh----CCCCHHHHHHHHHHHHHHhhHHHHHHHHHHHHh
Confidence 99999998887 345566666778888888888888887776643
No 74
>KOG1156 consensus N-terminal acetyltransferase [Chromatin structure and dynamics]
Probab=99.76 E-value=2.7e-14 Score=146.50 Aligned_cols=272 Identities=16% Similarity=0.134 Sum_probs=226.5
Q ss_pred HHHHHHHHHHHHcCChHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHH
Q 003563 68 ETYNTLGLAHSALGNHKSAFDFYVIAAHLSPKDSALWKQLLTFAVQKGDTAQAMYYIRQAIRAEPKDISLRIHLASFYVE 147 (810)
Q Consensus 68 ~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~ 147 (810)
.+++..+.-.+..++|.+.++..+..+...|.+++.....|..+..+|+-++|..+...++..++.....|..+|.++..
T Consensus 8 ~~lF~~~lk~yE~kQYkkgLK~~~~iL~k~~eHgeslAmkGL~L~~lg~~~ea~~~vr~glr~d~~S~vCwHv~gl~~R~ 87 (700)
T KOG1156|consen 8 NALFRRALKCYETKQYKKGLKLIKQILKKFPEHGESLAMKGLTLNCLGKKEEAYELVRLGLRNDLKSHVCWHVLGLLQRS 87 (700)
T ss_pred HHHHHHHHHHHHHHHHHhHHHHHHHHHHhCCccchhHHhccchhhcccchHHHHHHHHHHhccCcccchhHHHHHHHHhh
Confidence 35566666667889999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHhhCCCCCChHHHHHHHHHHHHcCCHHHHHHH
Q 003563 148 IGDYEKAAESYEQIQKLFPDNVDATKTGAQLFLKCGQTARSIGILEEYLKVHPSDADLSVIDLLVAILMENNAYEKTLQH 227 (810)
Q Consensus 148 ~g~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~~~la~~~~~~g~~~~A~~~ 227 (810)
..+|++|+.+|+.++.+.|+|..++..++.+..++++++.....-.+.++..|.... .|..++..+...|++..|...
T Consensus 88 dK~Y~eaiKcy~nAl~~~~dN~qilrDlslLQ~QmRd~~~~~~tr~~LLql~~~~ra--~w~~~Avs~~L~g~y~~A~~i 165 (700)
T KOG1156|consen 88 DKKYDEAIKCYRNALKIEKDNLQILRDLSLLQIQMRDYEGYLETRNQLLQLRPSQRA--SWIGFAVAQHLLGEYKMALEI 165 (700)
T ss_pred hhhHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHHhhhhHHHHHHHHHHhhhhhHH--HHHHHHHHHHHHHHHHHHHHH
Confidence 999999999999999999999999999999999999999999999999999998765 688999999999999999999
Q ss_pred HHHHHHHhcCCCCCc-----HHHHHHHHHHHHhcCCHHHHHHHHHHhhccCCchhHhHHHHHHHHHHHcCCcHHHHHHHH
Q 003563 228 IEHAQIVRFSGKELP-----LKLKVKAGICYLRLGNMEKAEILFADLQWKNAIDHADLITEVADTLMSLGHSNSALKYYH 302 (810)
Q Consensus 228 ~~~~~~~~~~~~~~~-----~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~ 302 (810)
++...+... ..+.. ..+.........+.|.+++|.+.+..--.... +........+.++++.+++++|...|.
T Consensus 166 l~ef~~t~~-~~~s~~~~e~se~~Ly~n~i~~E~g~~q~ale~L~~~e~~i~-Dkla~~e~ka~l~~kl~~lEeA~~~y~ 243 (700)
T KOG1156|consen 166 LEEFEKTQN-TSPSKEDYEHSELLLYQNQILIEAGSLQKALEHLLDNEKQIV-DKLAFEETKADLLMKLGQLEEAVKVYR 243 (700)
T ss_pred HHHHHHhhc-cCCCHHHHHHHHHHHHHHHHHHHcccHHHHHHHHHhhhhHHH-HHHHHhhhHHHHHHHHhhHHhHHHHHH
Confidence 988877632 11221 23445556677788999999988887533222 344556677999999999999999999
Q ss_pred HHHhccCCCCHHHHHHHHHHHHHccCHHHHH-HHHHHHHhhcC
Q 003563 303 FLETNAGTDNGYLYLKLAECYLSLKERAHAI-MFFYKALDRFE 344 (810)
Q Consensus 303 ~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~-~~~~~al~~~p 344 (810)
.++.. .|++...+..+-.++..-.+--+++ ..|...-+..|
T Consensus 244 ~Ll~r-nPdn~~Yy~~l~~~lgk~~d~~~~lk~ly~~ls~~y~ 285 (700)
T KOG1156|consen 244 RLLER-NPDNLDYYEGLEKALGKIKDMLEALKALYAILSEKYP 285 (700)
T ss_pred HHHhh-CchhHHHHHHHHHHHHHHhhhHHHHHHHHHHHhhcCc
Confidence 99976 8999988888877776333444444 55555444444
No 75
>KOG3785 consensus Uncharacterized conserved protein [Function unknown]
Probab=99.73 E-value=4.1e-15 Score=140.91 Aligned_cols=361 Identities=17% Similarity=0.123 Sum_probs=268.2
Q ss_pred HHHHcCCHHHHHHHHHHHHHhCCCCh-HHHHHHHHHHHHcCChHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCHHHH
Q 003563 42 LQYAYGNFEQAISLLKEVVRLSPNLP-ETYNTLGLAHSALGNHKSAFDFYVIAAHLSPKDSALWKQLLTFAVQKGDTAQA 120 (810)
Q Consensus 42 ~~~~~g~~~~A~~~~~~~l~~~p~~~-~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~p~~~~~~~~la~~~~~~g~~~~A 120 (810)
-+....||..|+.+++-.+..+.+.. ..-..+|.|++..|+|++|+..|.-+.+.+..+.+.+..+|.+++-.|.|.+|
T Consensus 31 dfls~rDytGAislLefk~~~~~EEE~~~~lWia~C~fhLgdY~~Al~~Y~~~~~~~~~~~el~vnLAcc~FyLg~Y~eA 110 (557)
T KOG3785|consen 31 DFLSNRDYTGAISLLEFKLNLDREEEDSLQLWIAHCYFHLGDYEEALNVYTFLMNKDDAPAELGVNLACCKFYLGQYIEA 110 (557)
T ss_pred HHHhcccchhHHHHHHHhhccchhhhHHHHHHHHHHHHhhccHHHHHHHHHHHhccCCCCcccchhHHHHHHHHHHHHHH
Confidence 35678999999999988776554433 56677899999999999999999999887777889999999999999999999
Q ss_pred HHHHHHHHH--------------cCC------------CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHH
Q 003563 121 MYYIRQAIR--------------AEP------------KDISLRIHLASFYVEIGDYEKAAESYEQIQKLFPDNVDATKT 174 (810)
Q Consensus 121 ~~~~~~al~--------------~~p------------~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~ 174 (810)
.....++-+ ++. +..+-...+|.+.+..-.|.+|++.|.+++.-+|+....-..
T Consensus 111 ~~~~~ka~k~pL~~RLlfhlahklndEk~~~~fh~~LqD~~EdqLSLAsvhYmR~HYQeAIdvYkrvL~dn~ey~alNVy 190 (557)
T KOG3785|consen 111 KSIAEKAPKTPLCIRLLFHLAHKLNDEKRILTFHSSLQDTLEDQLSLASVHYMRMHYQEAIDVYKRVLQDNPEYIALNVY 190 (557)
T ss_pred HHHHhhCCCChHHHHHHHHHHHHhCcHHHHHHHHHHHhhhHHHHHhHHHHHHHHHHHHHHHHHHHHHHhcChhhhhhHHH
Confidence 887665532 111 111224557777777888999999999999999998888889
Q ss_pred HHHHHHHcCChHHHHHHHHHHHhhCCCCCChHHHHHHHHHHHHcCCHHHHHHHHHH------------------------
Q 003563 175 GAQLFLKCGQTARSIGILEEYLKVHPSDADLSVIDLLVAILMENNAYEKTLQHIEH------------------------ 230 (810)
Q Consensus 175 la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~~~la~~~~~~g~~~~A~~~~~~------------------------ 230 (810)
+|.+|.++.-++-+.+++.-.++..|+++- +.+..+...++.=+-..|..-...
T Consensus 191 ~ALCyyKlDYydvsqevl~vYL~q~pdSti--A~NLkacn~fRl~ngr~ae~E~k~ladN~~~~~~f~~~l~rHNLVvFr 268 (557)
T KOG3785|consen 191 MALCYYKLDYYDVSQEVLKVYLRQFPDSTI--AKNLKACNLFRLINGRTAEDEKKELADNIDQEYPFIEYLCRHNLVVFR 268 (557)
T ss_pred HHHHHHhcchhhhHHHHHHHHHHhCCCcHH--HHHHHHHHHhhhhccchhHHHHHHHHhcccccchhHHHHHHcCeEEEe
Confidence 999999999999999999999999999875 555555555443221112221111
Q ss_pred ----HHHHhcCCCCCcHHHHHHHHHHHHhcCCHHHHHHHHHHhhccCCchhHhHHHHHHHHHHHcCCc-------HHHHH
Q 003563 231 ----AQIVRFSGKELPLKLKVKAGICYLRLGNMEKAEILFADLQWKNAIDHADLITEVADTLMSLGHS-------NSALK 299 (810)
Q Consensus 231 ----~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~-------~~A~~ 299 (810)
+++..|+--..-++++.+++..|.++++..+|..+.+.+- | ..|.-+...|.+....|+- .-|..
T Consensus 269 ngEgALqVLP~L~~~IPEARlNL~iYyL~q~dVqeA~~L~Kdl~---P-ttP~EyilKgvv~aalGQe~gSreHlKiAqq 344 (557)
T KOG3785|consen 269 NGEGALQVLPSLMKHIPEARLNLIIYYLNQNDVQEAISLCKDLD---P-TTPYEYILKGVVFAALGQETGSREHLKIAQQ 344 (557)
T ss_pred CCccHHHhchHHHhhChHhhhhheeeecccccHHHHHHHHhhcC---C-CChHHHHHHHHHHHHhhhhcCcHHHHHHHHH
Confidence 2222222223456888999999999999999999998874 3 2555566667777666654 33444
Q ss_pred HHHHHHhcc-CCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHhhcCCCHHHHHHHHHHHHHcCCHHHHHHhcCCCCCCCc
Q 003563 300 YYHFLETNA-GTDNGYLYLKLAECYLSLKERAHAIMFFYKALDRFEDNIDARLTLASLLLEEAKEEEAITLLSPPKDLDS 378 (810)
Q Consensus 300 ~~~~~~~~~-~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~ 378 (810)
.|+.+-... ..+.......+|.+++-..++++-+.++...-...-++....+++++.+...|++.+|.+.|-+.-..+-
T Consensus 345 ffqlVG~Sa~ecDTIpGRQsmAs~fFL~~qFddVl~YlnSi~sYF~NdD~Fn~N~AQAk~atgny~eaEelf~~is~~~i 424 (557)
T KOG3785|consen 345 FFQLVGESALECDTIPGRQSMASYFFLSFQFDDVLTYLNSIESYFTNDDDFNLNLAQAKLATGNYVEAEELFIRISGPEI 424 (557)
T ss_pred HHHHhcccccccccccchHHHHHHHHHHHHHHHHHHHHHHHHHHhcCcchhhhHHHHHHHHhcChHHHHHHHhhhcChhh
Confidence 444332221 1233445667788888889999999999988888888889999999999999999999999987665443
Q ss_pred ccCCCCCCChhhhHHHHHHHHHHHHHhcCCchhHHhhhhhh
Q 003563 379 LDMNSDKSNPWWLNEKIIMKLCHIYRAKGMPEDFVDAIFPL 419 (810)
Q Consensus 379 ~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~ 419 (810)
.+. .-....++++|...|+++-|-+.+.+.
T Consensus 425 kn~-----------~~Y~s~LArCyi~nkkP~lAW~~~lk~ 454 (557)
T KOG3785|consen 425 KNK-----------ILYKSMLARCYIRNKKPQLAWDMMLKT 454 (557)
T ss_pred hhh-----------HHHHHHHHHHHHhcCCchHHHHHHHhc
Confidence 321 124567899999999999998877543
No 76
>COG2956 Predicted N-acetylglucosaminyl transferase [Carbohydrate transport and metabolism]
Probab=99.73 E-value=1.3e-14 Score=136.49 Aligned_cols=270 Identities=13% Similarity=0.128 Sum_probs=232.9
Q ss_pred HHHHHHHHHcCChHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCC-----HHHHHHHHHHH
Q 003563 71 NTLGLAHSALGNHKSAFDFYVIAAHLSPKDSALWKQLLTFAVQKGDTAQAMYYIRQAIRAEPKD-----ISLRIHLASFY 145 (810)
Q Consensus 71 ~~l~~~~~~~g~~~~A~~~~~~a~~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~-----~~~~~~la~~~ 145 (810)
+..|.-+.-..+.++|++.|..+++.+|...++...+|.++...|..+.|+..-+..++ .|+. .-+...+|.-|
T Consensus 39 Yv~GlNfLLs~Q~dKAvdlF~e~l~~d~~t~e~~ltLGnLfRsRGEvDRAIRiHQ~L~~-spdlT~~qr~lAl~qL~~Dy 117 (389)
T COG2956 39 YVKGLNFLLSNQPDKAVDLFLEMLQEDPETFEAHLTLGNLFRSRGEVDRAIRIHQTLLE-SPDLTFEQRLLALQQLGRDY 117 (389)
T ss_pred HHhHHHHHhhcCcchHHHHHHHHHhcCchhhHHHHHHHHHHHhcchHHHHHHHHHHHhc-CCCCchHHHHHHHHHHHHHH
Confidence 44577777889999999999999999999999999999999999999999998887765 4544 34688899999
Q ss_pred HHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHhhCCCCCCh---HHHHHHHHHHHHcCCHH
Q 003563 146 VEIGDYEKAAESYEQIQKLFPDNVDATKTGAQLFLKCGQTARSIGILEEYLKVHPSDADL---SVIDLLVAILMENNAYE 222 (810)
Q Consensus 146 ~~~g~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~---~~~~~la~~~~~~g~~~ 222 (810)
...|-++.|...|....+...--..++..+..+|....++++|++.-++..+..+..... ..+..++..+....+.+
T Consensus 118 m~aGl~DRAE~~f~~L~de~efa~~AlqqLl~IYQ~treW~KAId~A~~L~k~~~q~~~~eIAqfyCELAq~~~~~~~~d 197 (389)
T COG2956 118 MAAGLLDRAEDIFNQLVDEGEFAEGALQQLLNIYQATREWEKAIDVAERLVKLGGQTYRVEIAQFYCELAQQALASSDVD 197 (389)
T ss_pred HHhhhhhHHHHHHHHHhcchhhhHHHHHHHHHHHHHhhHHHHHHHHHHHHHHcCCccchhHHHHHHHHHHHHHhhhhhHH
Confidence 999999999999999887655567889999999999999999999999999998877653 34666788888889999
Q ss_pred HHHHHHHHHHHHhcCCCCCcHHHHHHHHHHHHhcCCHHHHHHHHHHhhccCCchhHhHHHHHHHHHHHcCCcHHHHHHHH
Q 003563 223 KTLQHIEHAQIVRFSGKELPLKLKVKAGICYLRLGNMEKAEILFADLQWKNAIDHADLITEVADTLMSLGHSNSALKYYH 302 (810)
Q Consensus 223 ~A~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~ 302 (810)
.|...+.++++. ++....+-+.+|.+....|+++.|++.++.+++.+|.-.+.+...+..+|.+.|+.++.+..+.
T Consensus 198 ~A~~~l~kAlqa----~~~cvRAsi~lG~v~~~~g~y~~AV~~~e~v~eQn~~yl~evl~~L~~~Y~~lg~~~~~~~fL~ 273 (389)
T COG2956 198 RARELLKKALQA----DKKCVRASIILGRVELAKGDYQKAVEALERVLEQNPEYLSEVLEMLYECYAQLGKPAEGLNFLR 273 (389)
T ss_pred HHHHHHHHHHhh----CccceehhhhhhHHHHhccchHHHHHHHHHHHHhChHHHHHHHHHHHHHHHHhCCHHHHHHHHH
Confidence 999999999998 7888888899999999999999999999999999988778889999999999999999999999
Q ss_pred HHHhccCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHhhcCCCH
Q 003563 303 FLETNAGTDNGYLYLKLAECYLSLKERAHAIMFFYKALDRFEDNI 347 (810)
Q Consensus 303 ~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~ 347 (810)
++.+. ...+.+-..++..-....-.+.|..++.+-+...|+-.
T Consensus 274 ~~~~~--~~g~~~~l~l~~lie~~~G~~~Aq~~l~~Ql~r~Pt~~ 316 (389)
T COG2956 274 RAMET--NTGADAELMLADLIELQEGIDAAQAYLTRQLRRKPTMR 316 (389)
T ss_pred HHHHc--cCCccHHHHHHHHHHHhhChHHHHHHHHHHHhhCCcHH
Confidence 88864 34455566677777777778889988888888888743
No 77
>cd05804 StaR_like StaR_like; a well-conserved protein found in bacteria, plants, and animals. A family member from Streptomyces toyocaensis, StaR is part of a gene cluster involved in the biosynthesis of glycopeptide antibiotics (GPAs), specifically A47934. It has been speculated that StaR could be a flavoprotein hydroxylating a tyrosine sidechain. Some family members have been annotated as proteins containing tetratricopeptide (TPR) repeats, which may at least indicate mostly alpha-helical secondary structure.
Probab=99.73 E-value=7.1e-15 Score=155.70 Aligned_cols=313 Identities=16% Similarity=0.099 Sum_probs=190.2
Q ss_pred CCCChHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCCC---HHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHHHHH
Q 003563 63 SPNLPETYNTLGLAHSALGNHKSAFDFYVIAAHLSPKD---SALWKQLLTFAVQKGDTAQAMYYIRQAIRAEPKDISLRI 139 (810)
Q Consensus 63 ~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~p~~---~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~ 139 (810)
+|+.+.++..+|.++...|+++.|...+.++....|.+ .+.....+.++...|++++|...++++++.+|++..++.
T Consensus 2 dp~~~~a~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~a~~~~~~g~~~~A~~~~~~~l~~~P~~~~a~~ 81 (355)
T cd05804 2 DPDFALGHAAAALLLLLGGERPAAAAKAAAAAQALAARATERERAHVEALSAWIAGDLPKALALLEQLLDDYPRDLLALK 81 (355)
T ss_pred CCccHHHHHHHHHHHHhcCCcchHHHHHHHHHHHhccCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCcHHHHH
Confidence 57777777777777777777777777777766665533 344556677777777777777777777777777766555
Q ss_pred HHHHHHHHcCCHH----HHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHhhCCCCCChHHHHHHHHHH
Q 003563 140 HLASFYVEIGDYE----KAAESYEQIQKLFPDNVDATKTGAQLFLKCGQTARSIGILEEYLKVHPSDADLSVIDLLVAIL 215 (810)
Q Consensus 140 ~la~~~~~~g~~~----~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~~~la~~~ 215 (810)
. +..+...|++. .+.+.+.......|........+|.++...|++++|+..++++++..|++.. ++..+|.++
T Consensus 82 ~-~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~a~~~~~~G~~~~A~~~~~~al~~~p~~~~--~~~~la~i~ 158 (355)
T cd05804 82 L-HLGAFGLGDFSGMRDHVARVLPLWAPENPDYWYLLGMLAFGLEEAGQYDRAEEAARRALELNPDDAW--AVHAVAHVL 158 (355)
T ss_pred H-hHHHHHhcccccCchhHHHHHhccCcCCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCcH--HHHHHHHHH
Confidence 4 44444444333 3333333322344555566666777777777777777777777777777654 566777777
Q ss_pred HHcCCHHHHHHHHHHHHHHhcCCCCCcHHHHHHHHHHHHhcCCHHHHHHHHHHhhccCC--chhHhH-HH-HHHHHHHHc
Q 003563 216 MENNAYEKTLQHIEHAQIVRFSGKELPLKLKVKAGICYLRLGNMEKAEILFADLQWKNA--IDHADL-IT-EVADTLMSL 291 (810)
Q Consensus 216 ~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~--~~~~~~-~~-~la~~~~~~ 291 (810)
...|++++|+.++++++...+.+.......+..++.++...|++++|+..+++++...+ ...... -. .+...+...
T Consensus 159 ~~~g~~~eA~~~l~~~l~~~~~~~~~~~~~~~~la~~~~~~G~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 238 (355)
T cd05804 159 EMQGRFKEGIAFMESWRDTWDCSSMLRGHNWWHLALFYLERGDYEAALAIYDTHIAPSAESDPALDLLDAASLLWRLELA 238 (355)
T ss_pred HHcCCHHHHHHHHHhhhhccCCCcchhHHHHHHHHHHHHHCCCHHHHHHHHHHHhccccCCChHHHHhhHHHHHHHHHhc
Confidence 77777777777777777663321122223455677777777777777777777654333 101111 00 222223333
Q ss_pred CCcHHHHHH--H-HHHHhc-cCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHhhcCC---------CHHHHHHHHHHHH
Q 003563 292 GHSNSALKY--Y-HFLETN-AGTDNGYLYLKLAECYLSLKERAHAIMFFYKALDRFED---------NIDARLTLASLLL 358 (810)
Q Consensus 292 ~~~~~A~~~--~-~~~~~~-~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~---------~~~~~~~la~~~~ 358 (810)
|....+... + ...... ..+.........+.++...|+.++|...++.+...... ...+....+.++.
T Consensus 239 g~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~~~~~~l~A~~~~ 318 (355)
T cd05804 239 GHVDVGDRWEDLADYAAWHFPDHGLAFNDLHAALALAGAGDKDALDKLLAALKGRASSADDNKQPARDVGLPLAEALYAF 318 (355)
T ss_pred CCCChHHHHHHHHHHHHhhcCcccchHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHhccCchhhhHHhhhHHHHHHHHHH
Confidence 332222222 1 111111 01122233346777888888888888888877654322 2455677888888
Q ss_pred HcCCHHHHHHhcCCCCCCCc
Q 003563 359 EEAKEEEAITLLSPPKDLDS 378 (810)
Q Consensus 359 ~~g~~~~A~~~~~~a~~~~~ 378 (810)
..|++++|++.+..++....
T Consensus 319 ~~g~~~~A~~~L~~al~~a~ 338 (355)
T cd05804 319 AEGNYATALELLGPVRDDLA 338 (355)
T ss_pred HcCCHHHHHHHHHHHHHHHH
Confidence 99999999999988776553
No 78
>TIGR03302 OM_YfiO outer membrane assembly lipoprotein YfiO. Members of this protein family include YfiO, a near-essential protein of the outer membrane, part of a complex involved in protein insertion into the bacterial outer membrane. Many proteins in this family are annotated as ComL, based on the involvement of this protein in natural transformation with exogenous DNA in Neisseria gonorrhoeae. This protein family shows sequence similarity to, but is distinct from, the tol-pal system protein YbgF (TIGR02795).
Probab=99.73 E-value=5.6e-16 Score=153.11 Aligned_cols=209 Identities=14% Similarity=0.075 Sum_probs=165.2
Q ss_pred HHHHHhhhccccccCCCCCCCCCCCHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCh---HHHHHHHHHHHHcCC
Q 003563 6 YMLILQFSQLNKKRGRRKGSKNKLSPGVTKMLGEASLQYAYGNFEQAISLLKEVVRLSPNLP---ETYNTLGLAHSALGN 82 (810)
Q Consensus 6 ~ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~a~~~~~~g~~~~A~~~~~~~l~~~p~~~---~~~~~l~~~~~~~g~ 82 (810)
++++++.+|+++...... +..+.....++..|..++..|++++|+..+++++..+|+++ .+++.+|.++...|+
T Consensus 9 ~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~g~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~a~~~la~~~~~~~~ 85 (235)
T TIGR03302 9 ALLLLLAGCSSKKKKEAD---PVEEWPAEELYEEAKEALDSGDYTEAIKYFEALESRYPFSPYAEQAQLDLAYAYYKSGD 85 (235)
T ss_pred HHHHHHhhccCCcccccC---CcccCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCchhHHHHHHHHHHHHHhcCC
Confidence 345667888887543332 23355667889999999999999999999999999999876 688999999999999
Q ss_pred hHHHHHHHHHHHhcCCCCHH---HHHHHHHHHHHc--------CCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHcCCH
Q 003563 83 HKSAFDFYVIAAHLSPKDSA---LWKQLLTFAVQK--------GDTAQAMYYIRQAIRAEPKDISLRIHLASFYVEIGDY 151 (810)
Q Consensus 83 ~~~A~~~~~~a~~~~p~~~~---~~~~la~~~~~~--------g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~ 151 (810)
+++|+..++++++..|+++. +++.+|.++... |++++|+..+++++..+|++..+...+..+....+
T Consensus 86 ~~~A~~~~~~~l~~~p~~~~~~~a~~~~g~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~a~~~~~~~~~-- 163 (235)
T TIGR03302 86 YAEAIAAADRFIRLHPNHPDADYAYYLRGLSNYNQIDRVDRDQTAAREAFEAFQELIRRYPNSEYAPDAKKRMDYLRN-- 163 (235)
T ss_pred HHHHHHHHHHHHHHCcCCCchHHHHHHHHHHHHHhcccccCCHHHHHHHHHHHHHHHHHCCCChhHHHHHHHHHHHHH--
Confidence 99999999999999998776 688999999876 88999999999999999998765433322211110
Q ss_pred HHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHhhCCCCCC-hHHHHHHHHHHHHcCCHHHHHHHHHH
Q 003563 152 EKAAESYEQIQKLFPDNVDATKTGAQLFLKCGQTARSIGILEEYLKVHPSDAD-LSVIDLLVAILMENNAYEKTLQHIEH 230 (810)
Q Consensus 152 ~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~-~~~~~~la~~~~~~g~~~~A~~~~~~ 230 (810)
. .......+|.++...|++.+|+..++++++..|+.+. ..++..+|.++...|++++|..+++.
T Consensus 164 --~-------------~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~a~~~l~~~~~~lg~~~~A~~~~~~ 228 (235)
T TIGR03302 164 --R-------------LAGKELYVARFYLKRGAYVAAINRFETVVENYPDTPATEEALARLVEAYLKLGLKDLAQDAAAV 228 (235)
T ss_pred --H-------------HHHHHHHHHHHHHHcCChHHHHHHHHHHHHHCCCCcchHHHHHHHHHHHHHcCCHHHHHHHHHH
Confidence 0 0122346788888889999999999998888887643 35788889999999999999988887
Q ss_pred HHHH
Q 003563 231 AQIV 234 (810)
Q Consensus 231 ~~~~ 234 (810)
+...
T Consensus 229 l~~~ 232 (235)
T TIGR03302 229 LGAN 232 (235)
T ss_pred HHhh
Confidence 7665
No 79
>PLN02789 farnesyltranstransferase
Probab=99.72 E-value=4.7e-15 Score=149.23 Aligned_cols=221 Identities=14% Similarity=0.126 Sum_probs=188.8
Q ss_pred CCHHHHHHHHHHH-HHHHcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHcC-ChHHHHHHHHHHHhcCCCCHHHHHH
Q 003563 29 LSPGVTKMLGEAS-LQYAYGNFEQAISLLKEVVRLSPNLPETYNTLGLAHSALG-NHKSAFDFYVIAAHLSPKDSALWKQ 106 (810)
Q Consensus 29 ~~~~~~~~l~~a~-~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~l~~~~~~~g-~~~~A~~~~~~a~~~~p~~~~~~~~ 106 (810)
.+++....++.-. ++...+.+++|+..+.++++.+|++..+|..++.++...| ++++++..+.+++..+|++..+|..
T Consensus 32 y~~~~~~a~~~~ra~l~~~e~serAL~lt~~aI~lnP~~ytaW~~R~~iL~~L~~~l~eeL~~~~~~i~~npknyqaW~~ 111 (320)
T PLN02789 32 YTPEFREAMDYFRAVYASDERSPRALDLTADVIRLNPGNYTVWHFRRLCLEALDADLEEELDFAEDVAEDNPKNYQIWHH 111 (320)
T ss_pred eCHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHCchhHHHHHHHHHHHHHcchhHHHHHHHHHHHHHHCCcchHHhHH
Confidence 3455544443222 2455789999999999999999999999999999999998 6899999999999999999999999
Q ss_pred HHHHHHHcCCH--HHHHHHHHHHHHcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHc--
Q 003563 107 LLTFAVQKGDT--AQAMYYIRQAIRAEPKDISLRIHLASFYVEIGDYEKAAESYEQIQKLFPDNVDATKTGAQLFLKC-- 182 (810)
Q Consensus 107 la~~~~~~g~~--~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~-- 182 (810)
.+.++...|+. ++++.++.++++.+|++..+|..++.++...|++++|++.+.++++.+|.+..+|...+.+....
T Consensus 112 R~~~l~~l~~~~~~~el~~~~kal~~dpkNy~AW~~R~w~l~~l~~~~eeL~~~~~~I~~d~~N~sAW~~R~~vl~~~~~ 191 (320)
T PLN02789 112 RRWLAEKLGPDAANKELEFTRKILSLDAKNYHAWSHRQWVLRTLGGWEDELEYCHQLLEEDVRNNSAWNQRYFVITRSPL 191 (320)
T ss_pred HHHHHHHcCchhhHHHHHHHHHHHHhCcccHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHCCCchhHHHHHHHHHHhccc
Confidence 99999988874 78899999999999999999999999999999999999999999999999999999999988776
Q ss_pred -CCh----HHHHHHHHHHHhhCCCCCChHHHHHHHHHHHH----cCCHHHHHHHHHHHHHHhcCCCCCcHHHHHHHHHHH
Q 003563 183 -GQT----ARSIGILEEYLKVHPSDADLSVIDLLVAILME----NNAYEKTLQHIEHAQIVRFSGKELPLKLKVKAGICY 253 (810)
Q Consensus 183 -g~~----~~A~~~~~~~l~~~p~~~~~~~~~~la~~~~~----~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~la~~~ 253 (810)
|.+ ++++.+..+++..+|++.. +|+.++.++.. .++..+|+..+.+++.. .+....++..++.++
T Consensus 192 l~~~~~~~e~el~y~~~aI~~~P~N~S--aW~Yl~~ll~~~~~~l~~~~~~~~~~~~~~~~----~~~s~~al~~l~d~~ 265 (320)
T PLN02789 192 LGGLEAMRDSELKYTIDAILANPRNES--PWRYLRGLFKDDKEALVSDPEVSSVCLEVLSK----DSNHVFALSDLLDLL 265 (320)
T ss_pred cccccccHHHHHHHHHHHHHhCCCCcC--HHHHHHHHHhcCCcccccchhHHHHHHHhhcc----cCCcHHHHHHHHHHH
Confidence 333 4788888999999999987 89999999887 34566788888887665 566667777777777
Q ss_pred Hh
Q 003563 254 LR 255 (810)
Q Consensus 254 ~~ 255 (810)
..
T Consensus 266 ~~ 267 (320)
T PLN02789 266 CE 267 (320)
T ss_pred Hh
Confidence 64
No 80
>KOG1840 consensus Kinesin light chain [Cytoskeleton]
Probab=99.72 E-value=1.9e-15 Score=158.30 Aligned_cols=251 Identities=20% Similarity=0.208 Sum_probs=196.8
Q ss_pred CCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHhh--------CCCCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHHh-
Q 003563 165 FPDNVDATKTGAQLFLKCGQTARSIGILEEYLKV--------HPSDADLSVIDLLVAILMENNAYEKTLQHIEHAQIVR- 235 (810)
Q Consensus 165 ~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~--------~p~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~- 235 (810)
.|.-..+...++..|...|++++|+..++.+++. .|.-. .....+|.+|..++++.+|+..|++++.+.
T Consensus 195 ~P~~~~~~~~La~~y~~~g~~e~A~~l~k~Al~~l~k~~G~~hl~va--~~l~~~a~~y~~~~k~~eAv~ly~~AL~i~e 272 (508)
T KOG1840|consen 195 DPERLRTLRNLAEMYAVQGRLEKAEPLCKQALRILEKTSGLKHLVVA--SMLNILALVYRSLGKYDEAVNLYEEALTIRE 272 (508)
T ss_pred CchHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHccCccCHHHH--HHHHHHHHHHHHhccHHHHHHHHHHHHHHHH
Confidence 3444566677888888899999999888888876 22211 244568899999999999999999988764
Q ss_pred ---cCCCCCcHHHHHHHHHHHHhcCCHHHHHHHHHHhhcc-------CCchhHhHHHHHHHHHHHcCCcHHHHHHHHHHH
Q 003563 236 ---FSGKELPLKLKVKAGICYLRLGNMEKAEILFADLQWK-------NAIDHADLITEVADTLMSLGHSNSALKYYHFLE 305 (810)
Q Consensus 236 ---~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~-------~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~ 305 (810)
+.+++....++.+++.+|...|++++|..++++++.. .++.-...+..++.++...+++++|..++++++
T Consensus 273 ~~~G~~h~~va~~l~nLa~ly~~~GKf~EA~~~~e~Al~I~~~~~~~~~~~v~~~l~~~~~~~~~~~~~Eea~~l~q~al 352 (508)
T KOG1840|consen 273 EVFGEDHPAVAATLNNLAVLYYKQGKFAEAEEYCERALEIYEKLLGASHPEVAAQLSELAAILQSMNEYEEAKKLLQKAL 352 (508)
T ss_pred HhcCCCCHHHHHHHHHHHHHHhccCChHHHHHHHHHHHHHHHHhhccChHHHHHHHHHHHHHHHHhcchhHHHHHHHHHH
Confidence 4566667788889999999999999988888886542 233455668889999999999999999999876
Q ss_pred hc-------cCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHhhcC--------CCHHHHHHHHHHHHHcCCHHHHHHhc
Q 003563 306 TN-------AGTDNGYLYLKLAECYLSLKERAHAIMFFYKALDRFE--------DNIDARLTLASLLLEEAKEEEAITLL 370 (810)
Q Consensus 306 ~~-------~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p--------~~~~~~~~la~~~~~~g~~~~A~~~~ 370 (810)
+. .++..+..+.++|.+|..+|++++|.+.|++++.+.. ......+.+|..|.+.+++++|...|
T Consensus 353 ~i~~~~~g~~~~~~a~~~~nl~~l~~~~gk~~ea~~~~k~ai~~~~~~~~~~~~~~~~~l~~la~~~~~~k~~~~a~~l~ 432 (508)
T KOG1840|consen 353 KIYLDAPGEDNVNLAKIYANLAELYLKMGKYKEAEELYKKAIQILRELLGKKDYGVGKPLNQLAEAYEELKKYEEAEQLF 432 (508)
T ss_pred HHHHhhccccchHHHHHHHHHHHHHHHhcchhHHHHHHHHHHHHHHhcccCcChhhhHHHHHHHHHHHHhcccchHHHHH
Confidence 54 1234567889999999999999999999999998742 22456788999999999999999999
Q ss_pred CCCCCCCcccCCCCCCChhhhHHHHHHHHHHHHHhcCCchhHHhhhhhhhhh
Q 003563 371 SPPKDLDSLDMNSDKSNPWWLNEKIIMKLCHIYRAKGMPEDFVDAIFPLVCE 422 (810)
Q Consensus 371 ~~a~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~ 422 (810)
.++..+. .....+.+.. ...+.+||.+|..+|++++|++....++.-
T Consensus 433 ~~~~~i~-~~~g~~~~~~----~~~~~nL~~~Y~~~g~~e~a~~~~~~~~~~ 479 (508)
T KOG1840|consen 433 EEAKDIM-KLCGPDHPDV----TYTYLNLAALYRAQGNYEAAEELEEKVLNA 479 (508)
T ss_pred HHHHHHH-HHhCCCCCch----HHHHHHHHHHHHHcccHHHHHHHHHHHHHH
Confidence 9888776 3333333332 247889999999999999999998887744
No 81
>cd05804 StaR_like StaR_like; a well-conserved protein found in bacteria, plants, and animals. A family member from Streptomyces toyocaensis, StaR is part of a gene cluster involved in the biosynthesis of glycopeptide antibiotics (GPAs), specifically A47934. It has been speculated that StaR could be a flavoprotein hydroxylating a tyrosine sidechain. Some family members have been annotated as proteins containing tetratricopeptide (TPR) repeats, which may at least indicate mostly alpha-helical secondary structure.
Probab=99.70 E-value=4.6e-14 Score=149.47 Aligned_cols=311 Identities=17% Similarity=0.060 Sum_probs=231.0
Q ss_pred CHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC---hHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCCCHHHHHH
Q 003563 30 SPGVTKMLGEASLQYAYGNFEQAISLLKEVVRLSPNL---PETYNTLGLAHSALGNHKSAFDFYVIAAHLSPKDSALWKQ 106 (810)
Q Consensus 30 ~~~~~~~l~~a~~~~~~g~~~~A~~~~~~~l~~~p~~---~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~p~~~~~~~~ 106 (810)
|.-...+...|..+...|+.++|...+.++.+..|.+ .+..+..+.++...|++++|...+++++..+|++..++..
T Consensus 3 p~~~~a~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~a~~~~~~g~~~~A~~~~~~~l~~~P~~~~a~~~ 82 (355)
T cd05804 3 PDFALGHAAAALLLLLGGERPAAAAKAAAAAQALAARATERERAHVEALSAWIAGDLPKALALLEQLLDDYPRDLLALKL 82 (355)
T ss_pred CccHHHHHHHHHHHHhcCCcchHHHHHHHHHHHhccCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCcHHHHHH
Confidence 3445677888889999999999999999998887754 4567888999999999999999999999999999987775
Q ss_pred HHHHHHHcCC----HHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHc
Q 003563 107 LLTFAVQKGD----TAQAMYYIRQAIRAEPKDISLRIHLASFYVEIGDYEKAAESYEQIQKLFPDNVDATKTGAQLFLKC 182 (810)
Q Consensus 107 la~~~~~~g~----~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~ 182 (810)
+..+...|+ ...+...+.......|....++..+|.++...|++++|+..++++++..|+++.++..+|.++...
T Consensus 83 -~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~a~~~~~~G~~~~A~~~~~~al~~~p~~~~~~~~la~i~~~~ 161 (355)
T cd05804 83 -HLGAFGLGDFSGMRDHVARVLPLWAPENPDYWYLLGMLAFGLEEAGQYDRAEEAARRALELNPDDAWAVHAVAHVLEMQ 161 (355)
T ss_pred -hHHHHHhcccccCchhHHHHHhccCcCCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCcHHHHHHHHHHHHc
Confidence 555555544 444444444433456777778888999999999999999999999999999999999999999999
Q ss_pred CChHHHHHHHHHHHhhCCCCCCh--HHHHHHHHHHHHcCCHHHHHHHHHHHHHHhcCCCCCcHHHH-H--HHHHHHHhcC
Q 003563 183 GQTARSIGILEEYLKVHPSDADL--SVIDLLVAILMENNAYEKTLQHIEHAQIVRFSGKELPLKLK-V--KAGICYLRLG 257 (810)
Q Consensus 183 g~~~~A~~~~~~~l~~~p~~~~~--~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~-~--~la~~~~~~g 257 (810)
|++++|+..+++++...|.++.. ..+..++.++...|++++|+..++++....+. ....... . .+...+...|
T Consensus 162 g~~~eA~~~l~~~l~~~~~~~~~~~~~~~~la~~~~~~G~~~~A~~~~~~~~~~~~~--~~~~~~~~~~~~~l~~~~~~g 239 (355)
T cd05804 162 GRFKEGIAFMESWRDTWDCSSMLRGHNWWHLALFYLERGDYEAALAIYDTHIAPSAE--SDPALDLLDAASLLWRLELAG 239 (355)
T ss_pred CCHHHHHHHHHhhhhccCCCcchhHHHHHHHHHHHHHCCCHHHHHHHHHHHhccccC--CChHHHHhhHHHHHHHHHhcC
Confidence 99999999999999988764432 34567999999999999999999998654211 1111111 1 2222333344
Q ss_pred CHHHHHHH--H-HHhhccCC-chhHhHHHHHHHHHHHcCCcHHHHHHHHHHHhccCC--------CCHHHHHHHHHHHHH
Q 003563 258 NMEKAEIL--F-ADLQWKNA-IDHADLITEVADTLMSLGHSNSALKYYHFLETNAGT--------DNGYLYLKLAECYLS 325 (810)
Q Consensus 258 ~~~~A~~~--~-~~~~~~~~-~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~--------~~~~~~~~la~~~~~ 325 (810)
....+... + .......+ ..........+.++...|+.++|...++.+...... .........|.++..
T Consensus 240 ~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~~~~~~l~A~~~~~ 319 (355)
T cd05804 240 HVDVGDRWEDLADYAAWHFPDHGLAFNDLHAALALAGAGDKDALDKLLAALKGRASSADDNKQPARDVGLPLAEALYAFA 319 (355)
T ss_pred CCChHHHHHHHHHHHHhhcCcccchHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHhccCchhhhHHhhhHHHHHHHHHHH
Confidence 33332222 1 11111111 112223346788889999999999999887654222 135566788999999
Q ss_pred ccCHHHHHHHHHHHHhhc
Q 003563 326 LKERAHAIMFFYKALDRF 343 (810)
Q Consensus 326 ~g~~~~A~~~~~~al~~~ 343 (810)
.|++++|...+..++...
T Consensus 320 ~g~~~~A~~~L~~al~~a 337 (355)
T cd05804 320 EGNYATALELLGPVRDDL 337 (355)
T ss_pred cCCHHHHHHHHHHHHHHH
Confidence 999999999999999765
No 82
>KOG1915 consensus Cell cycle control protein (crooked neck) [Cell cycle control, cell division, chromosome partitioning]
Probab=99.69 E-value=1.6e-12 Score=128.43 Aligned_cols=479 Identities=11% Similarity=0.071 Sum_probs=355.6
Q ss_pred HHHHHHhcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC
Q 003563 89 FYVIAAHLSPKDSALWKQLLTFAVQKGDTAQAMYYIRQAIRAEPKDISLRIHLASFYVEIGDYEKAAESYEQIQKLFPDN 168 (810)
Q Consensus 89 ~~~~a~~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~ 168 (810)
-|+-.+..+.-+...|...|.--..++++..|...+++|+..+..+...|...+.+-++......|..++.+++.+-|.-
T Consensus 61 efEd~irrnR~~~~~WikYaqwEesq~e~~RARSv~ERALdvd~r~itLWlkYae~Emknk~vNhARNv~dRAvt~lPRV 140 (677)
T KOG1915|consen 61 EFEDQIRRNRLNMQVWIKYAQWEESQKEIQRARSVFERALDVDYRNITLWLKYAEFEMKNKQVNHARNVWDRAVTILPRV 140 (677)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHhcccccchHHHHHHHHHHhhhhHhHHHHHHHHHHHhcchH
Confidence 34444555556678899999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHcCChHHHHHHHHHHHhhCCCCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhcCCCCCcHHHHHH
Q 003563 169 VDATKTGAQLFLKCGQTARSIGILEEYLKVHPSDADLSVIDLLVAILMENNAYEKTLQHIEHAQIVRFSGKELPLKLKVK 248 (810)
Q Consensus 169 ~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~ 248 (810)
...|+....+-..+|+...|.++|++-++-.|+.. +|......-.+-+..+.|...|++.+-. ......+..
T Consensus 141 dqlWyKY~ymEE~LgNi~gaRqiferW~~w~P~eq---aW~sfI~fElRykeieraR~IYerfV~~-----HP~v~~wik 212 (677)
T KOG1915|consen 141 DQLWYKYIYMEEMLGNIAGARQIFERWMEWEPDEQ---AWLSFIKFELRYKEIERARSIYERFVLV-----HPKVSNWIK 212 (677)
T ss_pred HHHHHHHHHHHHHhcccHHHHHHHHHHHcCCCcHH---HHHHHHHHHHHhhHHHHHHHHHHHHhee-----cccHHHHHH
Confidence 99999999999999999999999999999998764 7888888888999999999999998866 345677888
Q ss_pred HHHHHHhcCCHHHHHHHHHHhhccCCch--hHhHHHHHHHHHHHcCCcHHHHHHHHHHHhccCCCC--HHHHHHHHHHHH
Q 003563 249 AGICYLRLGNMEKAEILFADLQWKNAID--HADLITEVADTLMSLGHSNSALKYYHFLETNAGTDN--GYLYLKLAECYL 324 (810)
Q Consensus 249 la~~~~~~g~~~~A~~~~~~~~~~~~~~--~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~--~~~~~~la~~~~ 324 (810)
.+..-.+.|+..-|...|+.++.....+ ...++...|..-..++.++.|.-+|+-+++. -|.+ ..++-.+-..-.
T Consensus 213 yarFE~k~g~~~~aR~VyerAie~~~~d~~~e~lfvaFA~fEe~qkE~ERar~iykyAld~-~pk~raeeL~k~~~~fEK 291 (677)
T KOG1915|consen 213 YARFEEKHGNVALARSVYERAIEFLGDDEEAEILFVAFAEFEERQKEYERARFIYKYALDH-IPKGRAEELYKKYTAFEK 291 (677)
T ss_pred HHHHHHhcCcHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh-cCcccHHHHHHHHHHHHH
Confidence 9999999999999999999987654332 3345566677777888999999999999876 4443 334444444444
Q ss_pred HccCH---HHHH-----HHHHHHHhhcCCCHHHHHHHHHHHHHcCCHHHHHHhcCCCCCCCcccCCCCCCChhhhHHHHH
Q 003563 325 SLKER---AHAI-----MFFYKALDRFEDNIDARLTLASLLLEEAKEEEAITLLSPPKDLDSLDMNSDKSNPWWLNEKII 396 (810)
Q Consensus 325 ~~g~~---~~A~-----~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~ 396 (810)
+-|+. ++++ -.|++.+..+|-|.++|+..-.+....|+.+.-.+.|++|+..-|... .+..|.. -++
T Consensus 292 qfGd~~gIEd~Iv~KRk~qYE~~v~~np~nYDsWfdylrL~e~~g~~~~Ire~yErAIanvpp~~----ekr~W~R-YIY 366 (677)
T KOG1915|consen 292 QFGDKEGIEDAIVGKRKFQYEKEVSKNPYNYDSWFDYLRLEESVGDKDRIRETYERAIANVPPAS----EKRYWRR-YIY 366 (677)
T ss_pred HhcchhhhHHHHhhhhhhHHHHHHHhCCCCchHHHHHHHHHHhcCCHHHHHHHHHHHHccCCchh----HHHHHHH-HHH
Confidence 45653 3443 358888999999999999999999999999999999999998776532 3455632 222
Q ss_pred HHHHHHHH---hcCCchhHHhhhhhhhhhhHHHHHHHHHhhhhhccchhhHHHHHhHhcCCCCCccccCCCCCCCchHHH
Q 003563 397 MKLCHIYR---AKGMPEDFVDAIFPLVCESLCVEALRQKVKVKRRLTKGILQQRTKIYNNLPTDSILCGIRPAAPKSELL 473 (810)
Q Consensus 397 ~~la~~~~---~~g~~~~A~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 473 (810)
..+--+++ ...+.+.+.++|+..++--+.
T Consensus 367 LWinYalyeEle~ed~ertr~vyq~~l~lIPH------------------------------------------------ 398 (677)
T KOG1915|consen 367 LWINYALYEELEAEDVERTRQVYQACLDLIPH------------------------------------------------ 398 (677)
T ss_pred HHHHHHHHHHHHhhhHHHHHHHHHHHHhhcCc------------------------------------------------
Confidence 22222221 122333333333333321000
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhcccccCCCCCCchhhhhccCCCCCCCCCCchhhHHHHHHHHHHHHhhhcHHHHHH
Q 003563 474 VAARARKKIQKKEALKEEKKALAKAAGVEWHSDDTDDESQQEAFREPPLPNLLKNEENQCLIIDLCKALASLQRYEEASE 553 (810)
Q Consensus 474 ~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~eA~~ 553 (810)
+.-....+.+-+|...++..+..-|..
T Consensus 399 -----------------------------------------------------kkFtFaKiWlmyA~feIRq~~l~~ARk 425 (677)
T KOG1915|consen 399 -----------------------------------------------------KKFTFAKIWLMYAQFEIRQLNLTGARK 425 (677)
T ss_pred -----------------------------------------------------ccchHHHHHHHHHHHHHHHcccHHHHH
Confidence 000122466778889999999999999
Q ss_pred HHHHHHhhhhccCChhHHHHHHHhhhhhhccccCCchhHHHHHHHHHhCCCChhHhHHHHHHHHhhcccccccchhhHHH
Q 003563 554 IINLSMRLAYNILPLEKKEELRSLGAKMAYDSTDPNHGFDCAKYILQLHPYSLSAWNCYYKVLSRMGKINSKHSKHSKFI 633 (810)
Q Consensus 554 ~~~~al~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~a~~~~r~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 633 (810)
++-.|+-..|. + + +--..+.+-.+-++++.+-..+.+++.-.|.+-.+|.-|+..-...|++ .++...+
T Consensus 426 iLG~AIG~cPK----~-K--lFk~YIelElqL~efDRcRkLYEkfle~~Pe~c~~W~kyaElE~~Lgdt----dRaRaif 494 (677)
T KOG1915|consen 426 ILGNAIGKCPK----D-K--LFKGYIELELQLREFDRCRKLYEKFLEFSPENCYAWSKYAELETSLGDT----DRARAIF 494 (677)
T ss_pred HHHHHhccCCc----h-h--HHHHHHHHHHHHhhHHHHHHHHHHHHhcChHhhHHHHHHHHHHHHhhhH----HHHHHHH
Confidence 99888753321 1 1 1112233344567899999999999999999999999998887777773 2555444
Q ss_pred HHHHHhcCCCCCchhhhcch--hhhccchHHHHHHHHHHHhhCCCChHHHHHHHHHHHHHHhC
Q 003563 634 RYLRAKYKDCVPPIIISGHQ--FTMASHHQDAARCYLEAYKLLPENPLINLCVGSALINLALG 694 (810)
Q Consensus 634 ~~~~~~~p~~~~~~~~~g~~--~~~~~~~~~Ai~~y~~a~~~~p~~p~~~l~l~~~~~~~~~~ 694 (810)
.=.+....-+.|-++..+-| -...|.++.|-..|.+.++..+..+ +..+.|..-...+.+
T Consensus 495 elAi~qp~ldmpellwkaYIdFEi~~~E~ekaR~LYerlL~rt~h~k-vWisFA~fe~s~~~~ 556 (677)
T KOG1915|consen 495 ELAISQPALDMPELLWKAYIDFEIEEGEFEKARALYERLLDRTQHVK-VWISFAKFEASASEG 556 (677)
T ss_pred HHHhcCcccccHHHHHHHhhhhhhhcchHHHHHHHHHHHHHhcccch-HHHhHHHHhcccccc
Confidence 44444433445555655655 3557999999999999999999877 666666554444433
No 83
>PLN02789 farnesyltranstransferase
Probab=99.69 E-value=1.4e-14 Score=145.80 Aligned_cols=221 Identities=13% Similarity=0.116 Sum_probs=178.8
Q ss_pred cCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcC-CHHHHHHHH
Q 003563 46 YGNFEQAISLLKEVVRLSPNLPETYNTLGLAHSALGNHKSAFDFYVIAAHLSPKDSALWKQLLTFAVQKG-DTAQAMYYI 124 (810)
Q Consensus 46 ~g~~~~A~~~~~~~l~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~p~~~~~~~~la~~~~~~g-~~~~A~~~~ 124 (810)
.++|.+|..+|+.++. ..++.++|+..+.+++.++|.+..+|...+.++..+| ++++++.++
T Consensus 33 ~~~~~~a~~~~ra~l~-----------------~~e~serAL~lt~~aI~lnP~~ytaW~~R~~iL~~L~~~l~eeL~~~ 95 (320)
T PLN02789 33 TPEFREAMDYFRAVYA-----------------SDERSPRALDLTADVIRLNPGNYTVWHFRRLCLEALDADLEEELDFA 95 (320)
T ss_pred CHHHHHHHHHHHHHHH-----------------cCCCCHHHHHHHHHHHHHCchhHHHHHHHHHHHHHcchhHHHHHHHH
Confidence 3566666666666554 4578889999999999999999999999999999998 689999999
Q ss_pred HHHHHcCCCCHHHHHHHHHHHHHcCCH--HHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHhhCCCC
Q 003563 125 RQAIRAEPKDISLRIHLASFYVEIGDY--EKAAESYEQIQKLFPDNVDATKTGAQLFLKCGQTARSIGILEEYLKVHPSD 202 (810)
Q Consensus 125 ~~al~~~p~~~~~~~~la~~~~~~g~~--~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~ 202 (810)
.++++.+|++..+|..++.++...|+. ++++.+++++++.+|.+..+|...+.++...|++++|++.+.++++.+|.+
T Consensus 96 ~~~i~~npknyqaW~~R~~~l~~l~~~~~~~el~~~~kal~~dpkNy~AW~~R~w~l~~l~~~~eeL~~~~~~I~~d~~N 175 (320)
T PLN02789 96 EDVAEDNPKNYQIWHHRRWLAEKLGPDAANKELEFTRKILSLDAKNYHAWSHRQWVLRTLGGWEDELEYCHQLLEEDVRN 175 (320)
T ss_pred HHHHHHCCcchHHhHHHHHHHHHcCchhhHHHHHHHHHHHHhCcccHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHCCCc
Confidence 999999999999999999999999874 788999999999999999999999999999999999999999999999999
Q ss_pred CChHHHHHHHHHHHHc---CCH----HHHHHHHHHHHHHhcCCCCCcHHHHHHHHHHHHh----cCCHHHHHHHHHHhhc
Q 003563 203 ADLSVIDLLVAILMEN---NAY----EKTLQHIEHAQIVRFSGKELPLKLKVKAGICYLR----LGNMEKAEILFADLQW 271 (810)
Q Consensus 203 ~~~~~~~~la~~~~~~---g~~----~~A~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~----~g~~~~A~~~~~~~~~ 271 (810)
.. +|+..+.+.... |.+ ++++.+..+++.. .|.+..++..++.++.. +++..+|...+.+++.
T Consensus 176 ~s--AW~~R~~vl~~~~~l~~~~~~~e~el~y~~~aI~~----~P~N~SaW~Yl~~ll~~~~~~l~~~~~~~~~~~~~~~ 249 (320)
T PLN02789 176 NS--AWNQRYFVITRSPLLGGLEAMRDSELKYTIDAILA----NPRNESPWRYLRGLFKDDKEALVSDPEVSSVCLEVLS 249 (320)
T ss_pred hh--HHHHHHHHHHhccccccccccHHHHHHHHHHHHHh----CCCCcCHHHHHHHHHhcCCcccccchhHHHHHHHhhc
Confidence 86 888888887665 222 4566777777777 56666666666666665 3344556666666655
Q ss_pred cCCchhHhHHHHHHHHHHH
Q 003563 272 KNAIDHADLITEVADTLMS 290 (810)
Q Consensus 272 ~~~~~~~~~~~~la~~~~~ 290 (810)
..+. .+.++..++.++..
T Consensus 250 ~~~~-s~~al~~l~d~~~~ 267 (320)
T PLN02789 250 KDSN-HVFALSDLLDLLCE 267 (320)
T ss_pred ccCC-cHHHHHHHHHHHHh
Confidence 5443 55566666666654
No 84
>KOG0550 consensus Molecular chaperone (DnaJ superfamily) [Posttranslational modification, protein turnover, chaperones]
Probab=99.69 E-value=1.2e-15 Score=148.02 Aligned_cols=287 Identities=18% Similarity=0.132 Sum_probs=232.1
Q ss_pred HHHHHHHHHHHcCChHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHc
Q 003563 69 TYNTLGLAHSALGNHKSAFDFYVIAAHLSPKDSALWKQLLTFAVQKGDTAQAMYYIRQAIRAEPKDISLRIHLASFYVEI 148 (810)
Q Consensus 69 ~~~~l~~~~~~~g~~~~A~~~~~~a~~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~ 148 (810)
-....|..++...+|..|+..+..|+...|++...|...+.+++..|++++|.-..++.++++|..+......+.++...
T Consensus 51 ~~k~~gn~~yk~k~Y~nal~~yt~Ai~~~pd~a~yy~nRAa~~m~~~~~~~a~~dar~~~r~kd~~~k~~~r~~~c~~a~ 130 (486)
T KOG0550|consen 51 EAKEEGNAFYKQKTYGNALKNYTFAIDMCPDNASYYSNRAATLMMLGRFEEALGDARQSVRLKDGFSKGQLREGQCHLAL 130 (486)
T ss_pred HHHhhcchHHHHhhHHHHHHHHHHHHHhCccchhhhchhHHHHHHHHhHhhcccchhhheecCCCccccccchhhhhhhh
Confidence 34556778888999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHhhCCCCCC-hHHHHHHHHHHHHcCCHHHHHHH
Q 003563 149 GDYEKAAESYEQIQKLFPDNVDATKTGAQLFLKCGQTARSIGILEEYLKVHPSDAD-LSVIDLLVAILMENNAYEKTLQH 227 (810)
Q Consensus 149 g~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~-~~~~~~la~~~~~~g~~~~A~~~ 227 (810)
++..+|.+.++. ..++ ....|+..+++.+..+...+. ...-..-+.++...|++++|...
T Consensus 131 ~~~i~A~~~~~~--------~~~~-----------~~anal~~~~~~~~s~s~~pac~~a~~lka~cl~~~~~~~~a~~e 191 (486)
T KOG0550|consen 131 SDLIEAEEKLKS--------KQAY-----------KAANALPTLEKLAPSHSREPACFKAKLLKAECLAFLGDYDEAQSE 191 (486)
T ss_pred HHHHHHHHHhhh--------hhhh-----------HHhhhhhhhhcccccccCCchhhHHHHhhhhhhhhcccchhHHHH
Confidence 999888887771 1111 122233333333332222121 12334556777777788877777
Q ss_pred HHHHHHHhcCCCCCcHHHHHHHHHHHHhcCCHHHHHHHHHHhhccCCc-----------hhHhHHHHHHHHHHHcCCcHH
Q 003563 228 IEHAQIVRFSGKELPLKLKVKAGICYLRLGNMEKAEILFADLQWKNAI-----------DHADLITEVADTLMSLGHSNS 296 (810)
Q Consensus 228 ~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~-----------~~~~~~~~la~~~~~~~~~~~ 296 (810)
--..+++ ++.+.++++..|.++...++.+.|+.+|++.+..+|. .....+..-|.-.++.|++.+
T Consensus 192 a~~ilkl----d~~n~~al~vrg~~~yy~~~~~ka~~hf~qal~ldpdh~~sk~~~~~~k~le~~k~~gN~~fk~G~y~~ 267 (486)
T KOG0550|consen 192 AIDILKL----DATNAEALYVRGLCLYYNDNADKAINHFQQALRLDPDHQKSKSASMMPKKLEVKKERGNDAFKNGNYRK 267 (486)
T ss_pred HHHHHhc----ccchhHHHHhcccccccccchHHHHHHHhhhhccChhhhhHHhHhhhHHHHHHHHhhhhhHhhccchhH
Confidence 7777777 6777777777777777788888888888877776663 245678888999999999999
Q ss_pred HHHHHHHHHhccCCC----CHHHHHHHHHHHHHccCHHHHHHHHHHHHhhcCCCHHHHHHHHHHHHHcCCHHHHHHhcCC
Q 003563 297 ALKYYHFLETNAGTD----NGYLYLKLAECYLSLKERAHAIMFFYKALDRFEDNIDARLTLASLLLEEAKEEEAITLLSP 372 (810)
Q Consensus 297 A~~~~~~~~~~~~~~----~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~ 372 (810)
|.+.|..++.+ +|. ++.+|.++|.+...+|+..+|+...+.++.++|....++...|.++..+++|++|.+.+++
T Consensus 268 A~E~Yteal~i-dP~n~~~naklY~nra~v~~rLgrl~eaisdc~~Al~iD~syikall~ra~c~l~le~~e~AV~d~~~ 346 (486)
T KOG0550|consen 268 AYECYTEALNI-DPSNKKTNAKLYGNRALVNIRLGRLREAISDCNEALKIDSSYIKALLRRANCHLALEKWEEAVEDYEK 346 (486)
T ss_pred HHHHHHHhhcC-CccccchhHHHHHHhHhhhcccCCchhhhhhhhhhhhcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999987 554 5667899999999999999999999999999999999999999999999999999999999
Q ss_pred CCCCCcc
Q 003563 373 PKDLDSL 379 (810)
Q Consensus 373 a~~~~~~ 379 (810)
+.+...+
T Consensus 347 a~q~~~s 353 (486)
T KOG0550|consen 347 AMQLEKD 353 (486)
T ss_pred HHhhccc
Confidence 9887765
No 85
>KOG1840 consensus Kinesin light chain [Cytoskeleton]
Probab=99.69 E-value=1.2e-14 Score=152.27 Aligned_cols=244 Identities=21% Similarity=0.246 Sum_probs=147.1
Q ss_pred CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHc--------CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC----
Q 003563 98 PKDSALWKQLLTFAVQKGDTAQAMYYIRQAIRA--------EPKDISLRIHLASFYVEIGDYEKAAESYEQIQKLF---- 165 (810)
Q Consensus 98 p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~--------~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~---- 165 (810)
|.-......++..|..+|+++.|+..++++++. .|.-......+|.+|..++++.+|+..|++++.+.
T Consensus 196 P~~~~~~~~La~~y~~~g~~e~A~~l~k~Al~~l~k~~G~~hl~va~~l~~~a~~y~~~~k~~eAv~ly~~AL~i~e~~~ 275 (508)
T KOG1840|consen 196 PERLRTLRNLAEMYAVQGRLEKAEPLCKQALRILEKTSGLKHLVVASMLNILALVYRSLGKYDEAVNLYEEALTIREEVF 275 (508)
T ss_pred chHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHccCccCHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHhc
Confidence 333344555677777777777777777777765 33333444457777777777777777777776642
Q ss_pred -CCC---HHHHHHHHHHHHHcCChHHHHHHHHHHHhhCCC-----CCC-hHHHHHHHHHHHHcCCHHHHHHHHHHHHHHh
Q 003563 166 -PDN---VDATKTGAQLFLKCGQTARSIGILEEYLKVHPS-----DAD-LSVIDLLVAILMENNAYEKTLQHIEHAQIVR 235 (810)
Q Consensus 166 -p~~---~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~-----~~~-~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~ 235 (810)
+++ ..++.+||.+|...|++++|..++++++++... .+. ...+..++.++...+++++|..+++++++++
T Consensus 276 G~~h~~va~~l~nLa~ly~~~GKf~EA~~~~e~Al~I~~~~~~~~~~~v~~~l~~~~~~~~~~~~~Eea~~l~q~al~i~ 355 (508)
T KOG1840|consen 276 GEDHPAVAATLNNLAVLYYKQGKFAEAEEYCERALEIYEKLLGASHPEVAAQLSELAAILQSMNEYEEAKKLLQKALKIY 355 (508)
T ss_pred CCCCHHHHHHHHHHHHHHhccCChHHHHHHHHHHHHHHHHhhccChHHHHHHHHHHHHHHHHhcchhHHHHHHHHHHHHH
Confidence 222 345667777777777777777777776664321 111 1345566666777777777777777666653
Q ss_pred c----CCCCCcHHHHHHHHHHHHhcCCHHHHHHHHHHhhccC-------CchhHhHHHHHHHHHHHcCCcHHHHHHHHHH
Q 003563 236 F----SGKELPLKLKVKAGICYLRLGNMEKAEILFADLQWKN-------AIDHADLITEVADTLMSLGHSNSALKYYHFL 304 (810)
Q Consensus 236 ~----~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~-------~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~ 304 (810)
. ..++.....+.++|.++...|++++|..++++++... .......+..+|..+.+.+++.+|...|..+
T Consensus 356 ~~~~g~~~~~~a~~~~nl~~l~~~~gk~~ea~~~~k~ai~~~~~~~~~~~~~~~~~l~~la~~~~~~k~~~~a~~l~~~~ 435 (508)
T KOG1840|consen 356 LDAPGEDNVNLAKIYANLAELYLKMGKYKEAEELYKKAIQILRELLGKKDYGVGKPLNQLAEAYEELKKYEEAEQLFEEA 435 (508)
T ss_pred HhhccccchHHHHHHHHHHHHHHHhcchhHHHHHHHHHHHHHHhcccCcChhhhHHHHHHHHHHHHhcccchHHHHHHHH
Confidence 2 2222334566667777777777777777777665432 1112344566666666666666666666654
Q ss_pred Hhc------cCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHh
Q 003563 305 ETN------AGTDNGYLYLKLAECYLSLKERAHAIMFFYKALD 341 (810)
Q Consensus 305 ~~~------~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~ 341 (810)
... ..|+....+.+||.+|..+|+++.|+++.++++.
T Consensus 436 ~~i~~~~g~~~~~~~~~~~nL~~~Y~~~g~~e~a~~~~~~~~~ 478 (508)
T KOG1840|consen 436 KDIMKLCGPDHPDVTYTYLNLAALYRAQGNYEAAEELEEKVLN 478 (508)
T ss_pred HHHHHHhCCCCCchHHHHHHHHHHHHHcccHHHHHHHHHHHHH
Confidence 332 2344555666677777777777777776666663
No 86
>KOG3785 consensus Uncharacterized conserved protein [Function unknown]
Probab=99.65 E-value=1.7e-13 Score=130.15 Aligned_cols=365 Identities=15% Similarity=0.104 Sum_probs=267.2
Q ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHcCChHHHHHHHHHHHhc--------------C-----
Q 003563 37 LGEASLQYAYGNFEQAISLLKEVVRLSPNLPETYNTLGLAHSALGNHKSAFDFYVIAAHL--------------S----- 97 (810)
Q Consensus 37 l~~a~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~--------------~----- 97 (810)
+-.|.+++..|+|++|+..|.-+...+.-+.+.+..++.|++-.|.|.+|.....++... +
T Consensus 61 lWia~C~fhLgdY~~Al~~Y~~~~~~~~~~~el~vnLAcc~FyLg~Y~eA~~~~~ka~k~pL~~RLlfhlahklndEk~~ 140 (557)
T KOG3785|consen 61 LWIAHCYFHLGDYEEALNVYTFLMNKDDAPAELGVNLACCKFYLGQYIEAKSIAEKAPKTPLCIRLLFHLAHKLNDEKRI 140 (557)
T ss_pred HHHHHHHHhhccHHHHHHHHHHHhccCCCCcccchhHHHHHHHHHHHHHHHHHHhhCCCChHHHHHHHHHHHHhCcHHHH
Confidence 335889999999999999999998877778899999999999999999999887665321 1
Q ss_pred -------CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHH
Q 003563 98 -------PKDSALWKQLLTFAVQKGDTAQAMYYIRQAIRAEPKDISLRIHLASFYVEIGDYEKAAESYEQIQKLFPDNVD 170 (810)
Q Consensus 98 -------p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~ 170 (810)
.+..+-...+|.+.+..-.|.+|+..|.+++..+|+....-..+|.||.++.-++-+.+.+.-.++..|+++-
T Consensus 141 ~~fh~~LqD~~EdqLSLAsvhYmR~HYQeAIdvYkrvL~dn~ey~alNVy~ALCyyKlDYydvsqevl~vYL~q~pdSti 220 (557)
T KOG3785|consen 141 LTFHSSLQDTLEDQLSLASVHYMRMHYQEAIDVYKRVLQDNPEYIALNVYMALCYYKLDYYDVSQEVLKVYLRQFPDSTI 220 (557)
T ss_pred HHHHHHHhhhHHHHHhHHHHHHHHHHHHHHHHHHHHHHhcChhhhhhHHHHHHHHHhcchhhhHHHHHHHHHHhCCCcHH
Confidence 0112334567778888889999999999999999999888999999999999999999999999999999998
Q ss_pred HHHHHHHHHHHcCChHHHHHHHHHH----------------------------HhhCCCC--CChHHHHHHHHHHHHcCC
Q 003563 171 ATKTGAQLFLKCGQTARSIGILEEY----------------------------LKVHPSD--ADLSVIDLLVAILMENNA 220 (810)
Q Consensus 171 ~~~~la~~~~~~g~~~~A~~~~~~~----------------------------l~~~p~~--~~~~~~~~la~~~~~~g~ 220 (810)
+....+...++.=+-..|....... ++.-|.- .-+.+..+++..|..+++
T Consensus 221 A~NLkacn~fRl~ngr~ae~E~k~ladN~~~~~~f~~~l~rHNLVvFrngEgALqVLP~L~~~IPEARlNL~iYyL~q~d 300 (557)
T KOG3785|consen 221 AKNLKACNLFRLINGRTAEDEKKELADNIDQEYPFIEYLCRHNLVVFRNGEGALQVLPSLMKHIPEARLNLIIYYLNQND 300 (557)
T ss_pred HHHHHHHHHhhhhccchhHHHHHHHHhcccccchhHHHHHHcCeEEEeCCccHHHhchHHHhhChHhhhhheeeeccccc
Confidence 8877776665542222222222111 1111211 112356688888999999
Q ss_pred HHHHHHHHHHHHHHhcCCCCCcHHHHHHHHHHHHhcCCHHHHHHHHHHhhc------cC-C-chhHhHHHHHHHHHHHcC
Q 003563 221 YEKTLQHIEHAQIVRFSGKELPLKLKVKAGICYLRLGNMEKAEILFADLQW------KN-A-IDHADLITEVADTLMSLG 292 (810)
Q Consensus 221 ~~~A~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~------~~-~-~~~~~~~~~la~~~~~~~ 292 (810)
.++|+...+.. +|..+.-+...|.+....|+--...++++.+.. .. . -+...-...++.+++-..
T Consensus 301 VqeA~~L~Kdl-------~PttP~EyilKgvv~aalGQe~gSreHlKiAqqffqlVG~Sa~ecDTIpGRQsmAs~fFL~~ 373 (557)
T KOG3785|consen 301 VQEAISLCKDL-------DPTTPYEYILKGVVFAALGQETGSREHLKIAQQFFQLVGESALECDTIPGRQSMASYFFLSF 373 (557)
T ss_pred HHHHHHHHhhc-------CCCChHHHHHHHHHHHHhhhhcCcHHHHHHHHHHHHHhcccccccccccchHHHHHHHHHHH
Confidence 99999887654 577777788889999888876555444443311 11 0 112233566788888888
Q ss_pred CcHHHHHHHHHHHhccCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHhhc-CCCHHHHHHHHHHHHHcCCHHHHHHhcC
Q 003563 293 HSNSALKYYHFLETNAGTDNGYLYLKLAECYLSLKERAHAIMFFYKALDRF-EDNIDARLTLASLLLEEAKEEEAITLLS 371 (810)
Q Consensus 293 ~~~~A~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~la~~~~~~g~~~~A~~~~~ 371 (810)
++++.+.++..+..- ..++....+++|.++...|++.+|.+.|-++-... .+..-....|+.+|...|+++-|.+++-
T Consensus 374 qFddVl~YlnSi~sY-F~NdD~Fn~N~AQAk~atgny~eaEelf~~is~~~ikn~~~Y~s~LArCyi~nkkP~lAW~~~l 452 (557)
T KOG3785|consen 374 QFDDVLTYLNSIESY-FTNDDDFNLNLAQAKLATGNYVEAEELFIRISGPEIKNKILYKSMLARCYIRNKKPQLAWDMML 452 (557)
T ss_pred HHHHHHHHHHHHHHH-hcCcchhhhHHHHHHHHhcChHHHHHHHhhhcChhhhhhHHHHHHHHHHHHhcCCchHHHHHHH
Confidence 999999999877754 66777788999999999999999999998876555 3344556779999999999999999886
Q ss_pred CCCCCCcccCCCCCCChhhhHHHHHHHHHHHHHhcCCchhHHhhhhhhhhh
Q 003563 372 PPKDLDSLDMNSDKSNPWWLNEKIIMKLCHIYRAKGMPEDFVDAIFPLVCE 422 (810)
Q Consensus 372 ~a~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~ 422 (810)
+.-. |.+. -.++--++...+..+++--|.+.|..+-..
T Consensus 453 k~~t--~~e~-----------fsLLqlIAn~CYk~~eFyyaaKAFd~lE~l 490 (557)
T KOG3785|consen 453 KTNT--PSER-----------FSLLQLIANDCYKANEFYYAAKAFDELEIL 490 (557)
T ss_pred hcCC--chhH-----------HHHHHHHHHHHHHHHHHHHHHHhhhHHHcc
Confidence 4422 2111 124445566666777776676666655433
No 87
>COG3071 HemY Uncharacterized enzyme of heme biosynthesis [Coenzyme metabolism]
Probab=99.64 E-value=1.5e-12 Score=126.92 Aligned_cols=298 Identities=17% Similarity=0.093 Sum_probs=201.3
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCC-CHHHHHHHHHHH
Q 003563 33 VTKMLGEASLQYAYGNFEQAISLLKEVVRLSPNLPETYNTLGLAHSALGNHKSAFDFYVIAAHLSPK-DSALWKQLLTFA 111 (810)
Q Consensus 33 ~~~~l~~a~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~p~-~~~~~~~la~~~ 111 (810)
+...+..|..-+..|+|.+|.....+.-+..+...-++..-+.+.-++||.+.|-.++.++.+..++ ........+.+.
T Consensus 84 a~~~~~egl~~l~eG~~~qAEkl~~rnae~~e~p~l~~l~aA~AA~qrgd~~~an~yL~eaae~~~~~~l~v~ltrarll 163 (400)
T COG3071 84 ARKALNEGLLKLFEGDFQQAEKLLRRNAEHGEQPVLAYLLAAEAAQQRGDEDRANRYLAEAAELAGDDTLAVELTRARLL 163 (400)
T ss_pred HHHHHHHHHHHHhcCcHHHHHHHHHHhhhcCcchHHHHHHHHHHHHhcccHHHHHHHHHHHhccCCCchHHHHHHHHHHH
Confidence 4455677888888999999999999987777766777777788888999999999999999888544 345577788899
Q ss_pred HHcCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCH-HH--HHHHHH--HHHHcCChH
Q 003563 112 VQKGDTAQAMYYIRQAIRAEPKDISLRIHLASFYVEIGDYEKAAESYEQIQKLFPDNV-DA--TKTGAQ--LFLKCGQTA 186 (810)
Q Consensus 112 ~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~-~~--~~~la~--~~~~~g~~~ 186 (810)
...|+++.|.....++++..|.++.++.....+|...|++.....++.++-+..--+. +. +...+. ++.+.++-.
T Consensus 164 l~~~d~~aA~~~v~~ll~~~pr~~~vlrLa~r~y~~~g~~~~ll~~l~~L~ka~~l~~~e~~~le~~a~~glL~q~~~~~ 243 (400)
T COG3071 164 LNRRDYPAARENVDQLLEMTPRHPEVLRLALRAYIRLGAWQALLAILPKLRKAGLLSDEEAARLEQQAWEGLLQQARDDN 243 (400)
T ss_pred HhCCCchhHHHHHHHHHHhCcCChHHHHHHHHHHHHhccHHHHHHHHHHHHHccCCChHHHHHHHHHHHHHHHHHHhccc
Confidence 9999999999999999999999999999999999999999999988888776543222 11 111111 111112211
Q ss_pred HHH---HHHHHHHhhCCCCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhcCCCCCcHHHHHHHHHHHHhcCCHHHHH
Q 003563 187 RSI---GILEEYLKVHPSDADLSVIDLLVAILMENNAYEKTLQHIEHAQIVRFSGKELPLKLKVKAGICYLRLGNMEKAE 263 (810)
Q Consensus 187 ~A~---~~~~~~l~~~p~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~ 263 (810)
.+. ..++..-..-..++. +...++.-+...|+.++|.+....+++. . .+..+... .-....++...=+
T Consensus 244 ~~~gL~~~W~~~pr~lr~~p~--l~~~~a~~li~l~~~~~A~~~i~~~Lk~----~-~D~~L~~~--~~~l~~~d~~~l~ 314 (400)
T COG3071 244 GSEGLKTWWKNQPRKLRNDPE--LVVAYAERLIRLGDHDEAQEIIEDALKR----Q-WDPRLCRL--IPRLRPGDPEPLI 314 (400)
T ss_pred cchHHHHHHHhccHHhhcChh--HHHHHHHHHHHcCChHHHHHHHHHHHHh----c-cChhHHHH--HhhcCCCCchHHH
Confidence 111 233322222222233 4556777777778888888777777766 1 11221111 1123456666666
Q ss_pred HHHHHhhccCCchhHhHHHHHHHHHHHcCCcHHHHHHHHHHHhccCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHhh
Q 003563 264 ILFADLQWKNAIDHADLITEVADTLMSLGHSNSALKYYHFLETNAGTDNGYLYLKLAECYLSLKERAHAIMFFYKALDR 342 (810)
Q Consensus 264 ~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~ 342 (810)
+..++.+...|. ++..+..+|..+.+.+.+.+|..+|+.+++. ..+...+..+|.++.++|+..+|.+.++.++.+
T Consensus 315 k~~e~~l~~h~~-~p~L~~tLG~L~~k~~~w~kA~~~leaAl~~--~~s~~~~~~la~~~~~~g~~~~A~~~r~e~L~~ 390 (400)
T COG3071 315 KAAEKWLKQHPE-DPLLLSTLGRLALKNKLWGKASEALEAALKL--RPSASDYAELADALDQLGEPEEAEQVRREALLL 390 (400)
T ss_pred HHHHHHHHhCCC-ChhHHHHHHHHHHHhhHHHHHHHHHHHHHhc--CCChhhHHHHHHHHHHcCChHHHHHHHHHHHHH
Confidence 666666666663 6677777777777777777777777766643 445556667777777777777777777776643
No 88
>KOG2047 consensus mRNA splicing factor [RNA processing and modification]
Probab=99.63 E-value=3.8e-11 Score=123.25 Aligned_cols=577 Identities=15% Similarity=0.134 Sum_probs=314.9
Q ss_pred HHHHHHHHHHHHhCCCChHHHHHHHHHHHHc--------CChHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCHHHHH
Q 003563 50 EQAISLLKEVVRLSPNLPETYNTLGLAHSAL--------GNHKSAFDFYVIAAHLSPKDSALWKQLLTFAVQKGDTAQAM 121 (810)
Q Consensus 50 ~~A~~~~~~~l~~~p~~~~~~~~l~~~~~~~--------g~~~~A~~~~~~a~~~~p~~~~~~~~la~~~~~~g~~~~A~ 121 (810)
.+-.-+|++++..-|.+...|+..-..-..+ ..|+.--.+|++++-.-.+-+..|......+..+|+...-.
T Consensus 43 k~~~~lYERal~~lp~sykiW~~YL~~R~~~vk~~~~T~~~~~~vn~c~er~lv~mHkmpRIwl~Ylq~l~~Q~~iT~tR 122 (835)
T KOG2047|consen 43 KQRNLLYERALKELPGSYKIWYDYLKARRAQVKHLCPTDPAYESVNNCFERCLVFMHKMPRIWLDYLQFLIKQGLITRTR 122 (835)
T ss_pred HHHHHHHHHHHHHCCCchHHHHHHHHHHHHHhhccCCCChHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHhcchHHHHH
Confidence 3445567778887787777776544322211 12344455566666555566777777777777888887777
Q ss_pred HHHHHHHHcCCC--CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHhhC
Q 003563 122 YYIRQAIRAEPK--DISLRIHLASFYVEIGDYEKAAESYEQIQKLFPDNVDATKTGAQLFLKCGQTARSIGILEEYLKVH 199 (810)
Q Consensus 122 ~~~~~al~~~p~--~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~ 199 (810)
..|.+++..-|- +...|-..-......|-++-++..|++.++..|...+ .....+...++.++|.+.+...+..+
T Consensus 123 ~tfdrALraLpvtqH~rIW~lyl~Fv~~~~lPets~rvyrRYLk~~P~~~e---eyie~L~~~d~~~eaa~~la~vln~d 199 (835)
T KOG2047|consen 123 RTFDRALRALPVTQHDRIWDLYLKFVESHGLPETSIRVYRRYLKVAPEARE---EYIEYLAKSDRLDEAAQRLATVLNQD 199 (835)
T ss_pred HHHHHHHHhCchHhhccchHHHHHHHHhCCChHHHHHHHHHHHhcCHHHHH---HHHHHHHhccchHHHHHHHHHhcCch
Confidence 788877776652 3344444455556667777788888888877776533 34455667777788777777766432
Q ss_pred -------CCCCChHHHHHHHHHHHHcCCHHH---HHHHHHHHHHHhcCCCCCcHHHHHHHHHHHHhcCCHHHHHHHHHHh
Q 003563 200 -------PSDADLSVIDLLVAILMENNAYEK---TLQHIEHAQIVRFSGKELPLKLKVKAGICYLRLGNMEKAEILFADL 269 (810)
Q Consensus 200 -------p~~~~~~~~~~la~~~~~~g~~~~---A~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~ 269 (810)
+.+. ..|..+..+....-+.-. ..+.++..+..+ ......++..+|..|.+.|.+++|...|+++
T Consensus 200 ~f~sk~gkSn~--qlw~elcdlis~~p~~~~slnvdaiiR~gi~rf---tDq~g~Lw~SLAdYYIr~g~~ekarDvyeea 274 (835)
T KOG2047|consen 200 EFVSKKGKSNH--QLWLELCDLISQNPDKVQSLNVDAIIRGGIRRF---TDQLGFLWCSLADYYIRSGLFEKARDVYEEA 274 (835)
T ss_pred hhhhhcccchh--hHHHHHHHHHHhCcchhcccCHHHHHHhhcccC---cHHHHHHHHHHHHHHHHhhhhHHHHHHHHHH
Confidence 2222 245555555554433322 223334444332 1233466778888888888888888888887
Q ss_pred hccCCc--hhHhHHHHHH-----HHHHHc-------C------CcHHHHHHHHHHHhc-----------cCCCCHHHHHH
Q 003563 270 QWKNAI--DHADLITEVA-----DTLMSL-------G------HSNSALKYYHFLETN-----------AGTDNGYLYLK 318 (810)
Q Consensus 270 ~~~~~~--~~~~~~~~la-----~~~~~~-------~------~~~~A~~~~~~~~~~-----------~~~~~~~~~~~ 318 (810)
+..-.. +...++...+ .+-... + +.+-.+..|+.++.. .+|.+..-|..
T Consensus 275 i~~v~tvrDFt~ifd~Ya~FEE~~~~~~me~a~~~~~n~ed~~dl~~~~a~~e~lm~rr~~~lNsVlLRQn~~nV~eW~k 354 (835)
T KOG2047|consen 275 IQTVMTVRDFTQIFDAYAQFEESCVAAKMELADEESGNEEDDVDLELHMARFESLMNRRPLLLNSVLLRQNPHNVEEWHK 354 (835)
T ss_pred HHhheehhhHHHHHHHHHHHHHHHHHHHHhhhhhcccChhhhhhHHHHHHHHHHHHhccchHHHHHHHhcCCccHHHHHh
Confidence 653221 1111111110 000111 1 122233344433322 35566666666
Q ss_pred HHHHHHHccCHHHHHHHHHHHHhh-cCCC-----HHHHHHHHHHHHHcCCHHHHHHhcCCCCCCCcccCCCCCCChhhhH
Q 003563 319 LAECYLSLKERAHAIMFFYKALDR-FEDN-----IDARLTLASLLLEEAKEEEAITLLSPPKDLDSLDMNSDKSNPWWLN 392 (810)
Q Consensus 319 la~~~~~~g~~~~A~~~~~~al~~-~p~~-----~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~ 392 (810)
...+ ..|+..+-+..|..|+.. +|.- ...|..+|.+|...|+.+.|..+|+++....-.... . -
T Consensus 355 RV~l--~e~~~~~~i~tyteAv~~vdP~ka~Gs~~~Lw~~faklYe~~~~l~~aRvifeka~~V~y~~v~-----d---L 424 (835)
T KOG2047|consen 355 RVKL--YEGNAAEQINTYTEAVKTVDPKKAVGSPGTLWVEFAKLYENNGDLDDARVIFEKATKVPYKTVE-----D---L 424 (835)
T ss_pred hhhh--hcCChHHHHHHHHHHHHccCcccCCCChhhHHHHHHHHHHhcCcHHHHHHHHHHhhcCCccchH-----H---H
Confidence 5444 356677777777777653 4422 356777788888888888888888777765432211 0 1
Q ss_pred HHHHHHHHHHHHhcCCchhHHhhhhhhhhhhHHHHHHHHHhhhhhccchhhHHHHHhHhcCCCCCccccCCCCCCCchHH
Q 003563 393 EKIIMKLCHIYRAKGMPEDFVDAIFPLVCESLCVEALRQKVKVKRRLTKGILQQRTKIYNNLPTDSILCGIRPAAPKSEL 472 (810)
Q Consensus 393 ~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 472 (810)
..++..-|..-....+++.|.+.+.++..-...+. + .-|.+..+.
T Consensus 425 a~vw~~waemElrh~~~~~Al~lm~~A~~vP~~~~-------------------~----------~~yd~~~pv------ 469 (835)
T KOG2047|consen 425 AEVWCAWAEMELRHENFEAALKLMRRATHVPTNPE-------------------L----------EYYDNSEPV------ 469 (835)
T ss_pred HHHHHHHHHHHHhhhhHHHHHHHHHhhhcCCCchh-------------------h----------hhhcCCCcH------
Confidence 23445555555555666666665554443211100 0 000000000
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhcccccCCCCCCchhhhhccCCCCCCCCCCchhhHHHHHHHHHHHHhhhcHHHHH
Q 003563 473 LVAARARKKIQKKEALKEEKKALAKAAGVEWHSDDTDDESQQEAFREPPLPNLLKNEENQCLIIDLCKALASLQRYEEAS 552 (810)
Q Consensus 473 ~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~eA~ 552 (810)
..|.- ....+...|+......|-++-..
T Consensus 470 --Q~rlh--------------------------------------------------rSlkiWs~y~DleEs~gtfestk 497 (835)
T KOG2047|consen 470 --QARLH--------------------------------------------------RSLKIWSMYADLEESLGTFESTK 497 (835)
T ss_pred --HHHHH--------------------------------------------------HhHHHHHHHHHHHHHhccHHHHH
Confidence 00000 01123344555666666666677
Q ss_pred HHHHHHHhhhhccCChhHHHHHHHhhhhhhccccCCchhHHHHHHHHHh--CCCChhHhHHHHHH-HHhhcccccccchh
Q 003563 553 EIINLSMRLAYNILPLEKKEELRSLGAKMAYDSTDPNHGFDCAKYILQL--HPYSLSAWNCYYKV-LSRMGKINSKHSKH 629 (810)
Q Consensus 553 ~~~~~al~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~a~~~~r~~~~~--~p~~~~~~~~~~~~-~~~~~~~~~~~~~~ 629 (810)
.+|++.+++... +|.. .+.+ +.+.-....+++++..+.+-+.. .|.-.++|+.|-.. +.+.|.
T Consensus 498 ~vYdriidLria--TPqi--i~Ny--AmfLEeh~yfeesFk~YErgI~LFk~p~v~diW~tYLtkfi~rygg-------- 563 (835)
T KOG2047|consen 498 AVYDRIIDLRIA--TPQI--IINY--AMFLEEHKYFEESFKAYERGISLFKWPNVYDIWNTYLTKFIKRYGG-------- 563 (835)
T ss_pred HHHHHHHHHhcC--CHHH--HHHH--HHHHHhhHHHHHHHHHHHcCCccCCCccHHHHHHHHHHHHHHHhcC--------
Confidence 777777765432 1211 1111 11112224467788888777664 78889999987422 222222
Q ss_pred hHHHHHHHHhcCCCCCchhhhcchhhhccchHHHHHHHHHHHhhCCCChHHHHHHHHHHHHHHhCccccchhHHHHHHHH
Q 003563 630 SKFIRYLRAKYKDCVPPIIISGHQFTMASHHQDAARCYLEAYKLLPENPLINLCVGSALINLALGFRLQNKHQCLAQGFA 709 (810)
Q Consensus 630 ~~~~~~~~~~~p~~~~~~~~~g~~~~~~~~~~~Ai~~y~~a~~~~p~~p~~~l~l~~~~~~~~~~r~~~~r~~~~~q~~~ 709 (810)
.+.+.|-..|++|+...| |.-+=.|=+.|. ..+.++..+..+++
T Consensus 564 ----------------------------~klEraRdLFEqaL~~Cp--p~~aKtiyLlYA------~lEEe~GLar~ams 607 (835)
T KOG2047|consen 564 ----------------------------TKLERARDLFEQALDGCP--PEHAKTIYLLYA------KLEEEHGLARHAMS 607 (835)
T ss_pred ----------------------------CCHHHHHHHHHHHHhcCC--HHHHHHHHHHHH------HHHHHhhHHHHHHH
Confidence 245677777777777777 555544544444 34556677777777
Q ss_pred HHHHhHhh-cCCCchhhhh--HHHHHHHhChhhHHHHHHHHHhccccccCCCCCCCCCCCcccccCCCCcccccHHHHHH
Q 003563 710 FLYNNLRL-CEHSQEALYN--IARACHHVGLVSLAASYYEKVLAIKEKDYPIPKHNDKRPDLMESGESGYCDLQREAAYN 786 (810)
Q Consensus 710 ~l~~y~~~-~~~~~e~~yn--lgr~~~~lg~~~~Ai~~Y~~vL~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~eaa~n 786 (810)
.+.+.... .+.++-..|| |-++-...|. ..-.+.|+|+++.=|+. =.++--..
T Consensus 608 iyerat~~v~~a~~l~myni~I~kaae~yGv-~~TR~iYekaIe~Lp~~-----------------------~~r~mclr 663 (835)
T KOG2047|consen 608 IYERATSAVKEAQRLDMYNIYIKKAAEIYGV-PRTREIYEKAIESLPDS-----------------------KAREMCLR 663 (835)
T ss_pred HHHHHHhcCCHHHHHHHHHHHHHHHHHHhCC-cccHHHHHHHHHhCChH-----------------------HHHHHHHH
Confidence 77665331 2223344444 3455556664 44567777777764431 01333344
Q ss_pred HHHHHHhcCCHHHHHHHHH
Q 003563 787 LHLIYKNSGAVDLARQLLK 805 (810)
Q Consensus 787 l~~iy~~~g~~~~A~~~~~ 805 (810)
-+..-.+-|..+-||.++.
T Consensus 664 FAdlEtklGEidRARaIya 682 (835)
T KOG2047|consen 664 FADLETKLGEIDRARAIYA 682 (835)
T ss_pred HHHHhhhhhhHHHHHHHHH
Confidence 4555556677777777664
No 89
>PF12569 NARP1: NMDA receptor-regulated protein 1 ; InterPro: IPR021183 This group represents N-terminal acetyltransferase A (NatA) auxiliary subunit and represents a non-catalytic component of the NatA N-terminal acetyltransferase, which catalyzes acetylation of proteins beginning with Met-Ser, Met-Gly and Met-Ala. N-terminal acetylation plays a role in normal eukaryotic translation and processing, protect against proteolytic degradation and protein turnover. NAT1 anchors ARD1 and NAT5 to the ribosome and may present the N- terminal of nascent polypeptides for acetylation [], [].
Probab=99.62 E-value=5.1e-13 Score=142.30 Aligned_cols=140 Identities=17% Similarity=0.043 Sum_probs=119.6
Q ss_pred HhHHHHHHHHHHHcCCcHHHHHHHHHHHhccCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHhhcCCCHHHHHHHHHHH
Q 003563 278 ADLITEVADTLMSLGHSNSALKYYHFLETNAGTDNGYLYLKLAECYLSLKERAHAIMFFYKALDRFEDNIDARLTLASLL 357 (810)
Q Consensus 278 ~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~ 357 (810)
..+++.++..|...|++++|+++.++++.. .|..++.++..|.++...|++.+|...++.+..+++.|--+....+..+
T Consensus 194 lw~~~~lAqhyd~~g~~~~Al~~Id~aI~h-tPt~~ely~~KarilKh~G~~~~Aa~~~~~Ar~LD~~DRyiNsK~aKy~ 272 (517)
T PF12569_consen 194 LWTLYFLAQHYDYLGDYEKALEYIDKAIEH-TPTLVELYMTKARILKHAGDLKEAAEAMDEARELDLADRYINSKCAKYL 272 (517)
T ss_pred HHHHHHHHHHHHHhCCHHHHHHHHHHHHhc-CCCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHhCChhhHHHHHHHHHHH
Confidence 456788999999999999999999999987 8999999999999999999999999999999999999999999999999
Q ss_pred HHcCCHHHHHHhcCCCCCCCcccCCC--CCCChhhhHHHHHHHHHHHHHhcCCchhHHhhhhhhhhhh
Q 003563 358 LEEAKEEEAITLLSPPKDLDSLDMNS--DKSNPWWLNEKIIMKLCHIYRAKGMPEDFVDAIFPLVCES 423 (810)
Q Consensus 358 ~~~g~~~~A~~~~~~a~~~~~~~~~~--~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~ 423 (810)
.+.|+.++|.+.+..-...+. ++.. ...+..| .....|.+|.+.|++..|+..|..+.+..
T Consensus 273 LRa~~~e~A~~~~~~Ftr~~~-~~~~~L~~mQc~W----f~~e~a~a~~r~~~~~~ALk~~~~v~k~f 335 (517)
T PF12569_consen 273 LRAGRIEEAEKTASLFTREDV-DPLSNLNDMQCMW----FETECAEAYLRQGDYGLALKRFHAVLKHF 335 (517)
T ss_pred HHCCCHHHHHHHHHhhcCCCC-CcccCHHHHHHHH----HHHHHHHHHHHHhhHHHHHHHHHHHHHHH
Confidence 999999999999876655442 2111 1123345 56778999999999999999998877663
No 90
>TIGR03302 OM_YfiO outer membrane assembly lipoprotein YfiO. Members of this protein family include YfiO, a near-essential protein of the outer membrane, part of a complex involved in protein insertion into the bacterial outer membrane. Many proteins in this family are annotated as ComL, based on the involvement of this protein in natural transformation with exogenous DNA in Neisseria gonorrhoeae. This protein family shows sequence similarity to, but is distinct from, the tol-pal system protein YbgF (TIGR02795).
Probab=99.60 E-value=1.7e-13 Score=135.37 Aligned_cols=192 Identities=14% Similarity=0.076 Sum_probs=160.4
Q ss_pred CCCChHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCCCH---HHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHH---
Q 003563 63 SPNLPETYNTLGLAHSALGNHKSAFDFYVIAAHLSPKDS---ALWKQLLTFAVQKGDTAQAMYYIRQAIRAEPKDIS--- 136 (810)
Q Consensus 63 ~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~p~~~---~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~--- 136 (810)
++..+..++.+|..+...|++++|+..+++++...|.++ .+++.+|.++...|++++|+..++++++..|+++.
T Consensus 29 ~~~~~~~~~~~g~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~a~~~la~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~ 108 (235)
T TIGR03302 29 EEWPAEELYEEAKEALDSGDYTEAIKYFEALESRYPFSPYAEQAQLDLAYAYYKSGDYAEAIAAADRFIRLHPNHPDADY 108 (235)
T ss_pred ccCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCchhHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHCcCCCchHH
Confidence 455788999999999999999999999999999999876 57899999999999999999999999999998876
Q ss_pred HHHHHHHHHHHc--------CCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHhhCCCCCChHHH
Q 003563 137 LRIHLASFYVEI--------GDYEKAAESYEQIQKLFPDNVDATKTGAQLFLKCGQTARSIGILEEYLKVHPSDADLSVI 208 (810)
Q Consensus 137 ~~~~la~~~~~~--------g~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~ 208 (810)
+++.+|.++... |++++|++.|++++..+|++..++..+..+.... .. . ....
T Consensus 109 a~~~~g~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~a~~~~~~~~----~~---~------------~~~~ 169 (235)
T TIGR03302 109 AYYLRGLSNYNQIDRVDRDQTAAREAFEAFQELIRRYPNSEYAPDAKKRMDYLR----NR---L------------AGKE 169 (235)
T ss_pred HHHHHHHHHHHhcccccCCHHHHHHHHHHHHHHHHHCCCChhHHHHHHHHHHHH----HH---H------------HHHH
Confidence 688999999876 8899999999999999999876654333221111 00 0 0123
Q ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHHhcCCCCCcHHHHHHHHHHHHhcCCHHHHHHHHHHhhccCC
Q 003563 209 DLLVAILMENNAYEKTLQHIEHAQIVRFSGKELPLKLKVKAGICYLRLGNMEKAEILFADLQWKNA 274 (810)
Q Consensus 209 ~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~ 274 (810)
..+|.++...|++.+|+..+++++..+|. .+....+++.+|.++...|++++|..+++.+....|
T Consensus 170 ~~~a~~~~~~g~~~~A~~~~~~al~~~p~-~~~~~~a~~~l~~~~~~lg~~~~A~~~~~~l~~~~~ 234 (235)
T TIGR03302 170 LYVARFYLKRGAYVAAINRFETVVENYPD-TPATEEALARLVEAYLKLGLKDLAQDAAAVLGANYP 234 (235)
T ss_pred HHHHHHHHHcCChHHHHHHHHHHHHHCCC-CcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCC
Confidence 47889999999999999999999998543 355678999999999999999999999998876654
No 91
>PRK15359 type III secretion system chaperone protein SscB; Provisional
Probab=99.59 E-value=3.5e-14 Score=126.43 Aligned_cols=126 Identities=12% Similarity=0.075 Sum_probs=110.1
Q ss_pred HHHHHHHHHhCCCChHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCC
Q 003563 53 ISLLKEVVRLSPNLPETYNTLGLAHSALGNHKSAFDFYVIAAHLSPKDSALWKQLLTFAVQKGDTAQAMYYIRQAIRAEP 132 (810)
Q Consensus 53 ~~~~~~~l~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p 132 (810)
..+|+++++.+|++ ++.+|.++...|++++|+..|++++..+|.+..+|..+|.++...|++++|+.+|++++..+|
T Consensus 13 ~~~~~~al~~~p~~---~~~~g~~~~~~g~~~~A~~~~~~al~~~P~~~~a~~~lg~~~~~~g~~~~A~~~y~~Al~l~p 89 (144)
T PRK15359 13 EDILKQLLSVDPET---VYASGYASWQEGDYSRAVIDFSWLVMAQPWSWRAHIALAGTWMMLKEYTTAINFYGHALMLDA 89 (144)
T ss_pred HHHHHHHHHcCHHH---HHHHHHHHHHcCCHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCC
Confidence 45778888888764 667888999999999999999999999999999999999999999999999999999999999
Q ss_pred CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHH
Q 003563 133 KDISLRIHLASFYVEIGDYEKAAESYEQIQKLFPDNVDATKTGAQLFLK 181 (810)
Q Consensus 133 ~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~ 181 (810)
+++.+++.+|.++...|++++|+..|++++...|+++..+..++.+...
T Consensus 90 ~~~~a~~~lg~~l~~~g~~~eAi~~~~~Al~~~p~~~~~~~~~~~~~~~ 138 (144)
T PRK15359 90 SHPEPVYQTGVCLKMMGEPGLAREAFQTAIKMSYADASWSEIRQNAQIM 138 (144)
T ss_pred CCcHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHH
Confidence 9999999999999999999999999999999999998888888776554
No 92
>PF12569 NARP1: NMDA receptor-regulated protein 1 ; InterPro: IPR021183 This group represents N-terminal acetyltransferase A (NatA) auxiliary subunit and represents a non-catalytic component of the NatA N-terminal acetyltransferase, which catalyzes acetylation of proteins beginning with Met-Ser, Met-Gly and Met-Ala. N-terminal acetylation plays a role in normal eukaryotic translation and processing, protect against proteolytic degradation and protein turnover. NAT1 anchors ARD1 and NAT5 to the ribosome and may present the N- terminal of nascent polypeptides for acetylation [], [].
Probab=99.59 E-value=2.8e-11 Score=129.08 Aligned_cols=303 Identities=16% Similarity=0.144 Sum_probs=221.1
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCCCHHHHHHHHHHHHH
Q 003563 34 TKMLGEASLQYAYGNFEQAISLLKEVVRLSPNLPETYNTLGLAHSALGNHKSAFDFYVIAAHLSPKDSALWKQLLTFAVQ 113 (810)
Q Consensus 34 ~~~l~~a~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~p~~~~~~~~la~~~~~ 113 (810)
..++-++.++...|++++|++++.+....-++.....-..|.++..+|++++|...|...+..+|++...+..+..+...
T Consensus 5 E~lLY~~~il~e~g~~~~AL~~L~~~~~~I~Dk~~~~E~rA~ll~kLg~~~eA~~~y~~Li~rNPdn~~Yy~~L~~~~g~ 84 (517)
T PF12569_consen 5 ELLLYKNSILEEAGDYEEALEHLEKNEKQILDKLAVLEKRAELLLKLGRKEEAEKIYRELIDRNPDNYDYYRGLEEALGL 84 (517)
T ss_pred HHHHHHHHHHHHCCCHHHHHHHHHhhhhhCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCcHHHHHHHHHHHhh
Confidence 45667888999999999999999998888888899999999999999999999999999999999999999999888733
Q ss_pred c-----CCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHcCCHHHH-HHHHHHHHHhCCCCHHHHHHHHHHHHHcCChHH
Q 003563 114 K-----GDTAQAMYYIRQAIRAEPKDISLRIHLASFYVEIGDYEKA-AESYEQIQKLFPDNVDATKTGAQLFLKCGQTAR 187 (810)
Q Consensus 114 ~-----g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A-~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~ 187 (810)
. .+.+.-...|+......|....+.. +...+..-..+... ..++...+.. .-|.+...+-.+|....+..-
T Consensus 85 ~~~~~~~~~~~~~~~y~~l~~~yp~s~~~~r-l~L~~~~g~~F~~~~~~yl~~~l~K--gvPslF~~lk~Ly~d~~K~~~ 161 (517)
T PF12569_consen 85 QLQLSDEDVEKLLELYDELAEKYPRSDAPRR-LPLDFLEGDEFKERLDEYLRPQLRK--GVPSLFSNLKPLYKDPEKAAI 161 (517)
T ss_pred hcccccccHHHHHHHHHHHHHhCccccchhH-hhcccCCHHHHHHHHHHHHHHHHhc--CCchHHHHHHHHHcChhHHHH
Confidence 3 3567778888888888876543321 21112222233333 3333444433 345555556555553333332
Q ss_pred HHHHHHHHHhh---C----------CCCCCh--HHHHHHHHHHHHcCCHHHHHHHHHHHHHHhcCCCCCcHHHHHHHHHH
Q 003563 188 SIGILEEYLKV---H----------PSDADL--SVIDLLVAILMENNAYEKTLQHIEHAQIVRFSGKELPLKLKVKAGIC 252 (810)
Q Consensus 188 A~~~~~~~l~~---~----------p~~~~~--~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~la~~ 252 (810)
...++...... . ...+.. .+++.++..|...|++++|+.+++++++. .|..++.++..|.+
T Consensus 162 i~~l~~~~~~~l~~~~~~~~~~~~~~~~p~~~lw~~~~lAqhyd~~g~~~~Al~~Id~aI~h----tPt~~ely~~Kari 237 (517)
T PF12569_consen 162 IESLVEEYVNSLESNGSFSNGDDEEKEPPSTLLWTLYFLAQHYDYLGDYEKALEYIDKAIEH----TPTLVELYMTKARI 237 (517)
T ss_pred HHHHHHHHHHhhcccCCCCCccccccCCchHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHhc----CCCcHHHHHHHHHH
Confidence 33333332221 0 111221 25678899999999999999999999998 78889999999999
Q ss_pred HHhcCCHHHHHHHHHHhhccCCchhHhHHHHHHHHHHHcCCcHHHHHHHHHHHhccC-CC-C------HHHHHHHHHHHH
Q 003563 253 YLRLGNMEKAEILFADLQWKNAIDHADLITEVADTLMSLGHSNSALKYYHFLETNAG-TD-N------GYLYLKLAECYL 324 (810)
Q Consensus 253 ~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~-~~-~------~~~~~~la~~~~ 324 (810)
+-+.|++.+|...++.+...+.. +--+....+..+++.|+.++|...+........ |. + .+.....|.+|.
T Consensus 238 lKh~G~~~~Aa~~~~~Ar~LD~~-DRyiNsK~aKy~LRa~~~e~A~~~~~~Ftr~~~~~~~~L~~mQc~Wf~~e~a~a~~ 316 (517)
T PF12569_consen 238 LKHAGDLKEAAEAMDEARELDLA-DRYINSKCAKYLLRAGRIEEAEKTASLFTREDVDPLSNLNDMQCMWFETECAEAYL 316 (517)
T ss_pred HHHCCCHHHHHHHHHHHHhCChh-hHHHHHHHHHHHHHCCCHHHHHHHHHhhcCCCCCcccCHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999877764 666777788899999999999999887664421 11 1 223356689999
Q ss_pred HccCHHHHHHHHHHHHhhcC
Q 003563 325 SLKERAHAIMFFYKALDRFE 344 (810)
Q Consensus 325 ~~g~~~~A~~~~~~al~~~p 344 (810)
+.|++..|++.|..+.+...
T Consensus 317 r~~~~~~ALk~~~~v~k~f~ 336 (517)
T PF12569_consen 317 RQGDYGLALKRFHAVLKHFD 336 (517)
T ss_pred HHhhHHHHHHHHHHHHHHHH
Confidence 99999999999998887654
No 93
>KOG2376 consensus Signal recognition particle, subunit Srp72 [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.57 E-value=8.6e-11 Score=119.96 Aligned_cols=379 Identities=11% Similarity=0.017 Sum_probs=236.9
Q ss_pred CHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCCCHHHHHHHHH
Q 003563 30 SPGVTKMLGEASLQYAYGNFEQAISLLKEVVRLSPNLPETYNTLGLAHSALGNHKSAFDFYVIAAHLSPKDSALWKQLLT 109 (810)
Q Consensus 30 ~~~~~~~l~~a~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~p~~~~~~~~la~ 109 (810)
|.+...+.-...+.++.+.|++|+...+.-..... .....+..+.|.++.+..++|+..+. ..++.+.......|.
T Consensus 43 pdd~~a~~cKvValIq~~ky~~ALk~ikk~~~~~~-~~~~~fEKAYc~Yrlnk~Dealk~~~---~~~~~~~~ll~L~AQ 118 (652)
T KOG2376|consen 43 PDDEDAIRCKVVALIQLDKYEDALKLIKKNGALLV-INSFFFEKAYCEYRLNKLDEALKTLK---GLDRLDDKLLELRAQ 118 (652)
T ss_pred CCcHhhHhhhHhhhhhhhHHHHHHHHHHhcchhhh-cchhhHHHHHHHHHcccHHHHHHHHh---cccccchHHHHHHHH
Confidence 45555666677888999999999954443222111 11223789999999999999999998 456667778888999
Q ss_pred HHHHcCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHcCChHHH
Q 003563 110 FAVQKGDTAQAMYYIRQAIRAEPKDISLRIHLASFYVEIGDYEKAAESYEQIQKLFPD-NVDATKTGAQLFLKCGQTARS 188 (810)
Q Consensus 110 ~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~-~~~~~~~la~~~~~~g~~~~A 188 (810)
+++++|+|++|+..|+..++.+.++.+............. ..+ . ..+.....|+ +.+.+++.|.++...|+|.+|
T Consensus 119 vlYrl~~ydealdiY~~L~kn~~dd~d~~~r~nl~a~~a~--l~~-~-~~q~v~~v~e~syel~yN~Ac~~i~~gky~qA 194 (652)
T KOG2376|consen 119 VLYRLERYDEALDIYQHLAKNNSDDQDEERRANLLAVAAA--LQV-Q-LLQSVPEVPEDSYELLYNTACILIENGKYNQA 194 (652)
T ss_pred HHHHHhhHHHHHHHHHHHHhcCCchHHHHHHHHHHHHHHh--hhH-H-HHHhccCCCcchHHHHHHHHHHHHhcccHHHH
Confidence 9999999999999999999887766655443332221110 111 1 2333334444 567899999999999999999
Q ss_pred HHHHHHHHhhC-----CC--C-CC-----hHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhcCCCCCcHHHHHHHHHHHHh
Q 003563 189 IGILEEYLKVH-----PS--D-AD-----LSVIDLLVAILMENNAYEKTLQHIEHAQIVRFSGKELPLKLKVKAGICYLR 255 (810)
Q Consensus 189 ~~~~~~~l~~~-----p~--~-~~-----~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~ 255 (810)
++.+++++++. .+ + .+ ..+...++.++...|+.++|...|...+...+.+.+....+..++..+-..
T Consensus 195 ~elL~kA~~~~~e~l~~~d~~eEeie~el~~IrvQlayVlQ~~Gqt~ea~~iy~~~i~~~~~D~~~~Av~~NNLva~~~d 274 (652)
T KOG2376|consen 195 IELLEKALRICREKLEDEDTNEEEIEEELNPIRVQLAYVLQLQGQTAEASSIYVDIIKRNPADEPSLAVAVNNLVALSKD 274 (652)
T ss_pred HHHHHHHHHHHHHhhcccccchhhHHHHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHhcCCCchHHHHHhcchhhhccc
Confidence 99999995432 11 1 11 134567899999999999999999999988554444333333333322211
Q ss_pred cCCHH-HHHHHHHHhhccCC---------chhHhHHHHHHHHHHHcCCcHHHHHHHHHHHhccCCCCHHHHHHHHHHHHH
Q 003563 256 LGNME-KAEILFADLQWKNA---------IDHADLITEVADTLMSLGHSNSALKYYHFLETNAGTDNGYLYLKLAECYLS 325 (810)
Q Consensus 256 ~g~~~-~A~~~~~~~~~~~~---------~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~la~~~~~ 325 (810)
..-++ .++..++......+ .....++.+.+...+..+.-+.+.+.....-.. .|....--.........
T Consensus 275 ~~~~d~~~l~~k~~~~~~l~~~~l~~Ls~~qk~~i~~N~~lL~l~tnk~~q~r~~~a~lp~~-~p~~~~~~ll~~~t~~~ 353 (652)
T KOG2376|consen 275 QNYFDGDLLKSKKSQVFKLAEFLLSKLSKKQKQAIYRNNALLALFTNKMDQVRELSASLPGM-SPESLFPILLQEATKVR 353 (652)
T ss_pred cccCchHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHhCCcc-CchHHHHHHHHHHHHHH
Confidence 11111 11222222111111 123345666777777777777777666444332 23322222222333333
Q ss_pred ccCHHHHHHHHHHHHhhcCCC-HHHHHHHHHHHHHcCCHHHHHHhcCCCCCCCcccCCCCCCChhhhHHHHHHHHHHHHH
Q 003563 326 LKERAHAIMFFYKALDRFEDN-IDARLTLASLLLEEAKEEEAITLLSPPKDLDSLDMNSDKSNPWWLNEKIIMKLCHIYR 404 (810)
Q Consensus 326 ~g~~~~A~~~~~~al~~~p~~-~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~ 404 (810)
...+..|.+.+....+.+|.+ ..+.+.++.+...+|+++.|++.+...+......... . --.+.+...+-..|+
T Consensus 354 ~~~~~ka~e~L~~~~~~~p~~s~~v~L~~aQl~is~gn~~~A~~il~~~~~~~~ss~~~--~---~~~P~~V~aiv~l~~ 428 (652)
T KOG2376|consen 354 EKKHKKAIELLLQFADGHPEKSKVVLLLRAQLKISQGNPEVALEILSLFLESWKSSILE--A---KHLPGTVGAIVALYY 428 (652)
T ss_pred HHHHhhhHHHHHHHhccCCchhHHHHHHHHHHHHhcCCHHHHHHHHHHHhhhhhhhhhh--h---ccChhHHHHHHHHHH
Confidence 336899999999999999987 7788999999999999999999998433111110000 0 001123344445566
Q ss_pred hcCCchhHHhhhhhhhhh
Q 003563 405 AKGMPEDFVDAIFPLVCE 422 (810)
Q Consensus 405 ~~g~~~~A~~~~~~~l~~ 422 (810)
..+..+-|...+..++..
T Consensus 429 ~~~~~~~a~~vl~~Ai~~ 446 (652)
T KOG2376|consen 429 KIKDNDSASAVLDSAIKW 446 (652)
T ss_pred hccCCccHHHHHHHHHHH
Confidence 666666666666655543
No 94
>COG3071 HemY Uncharacterized enzyme of heme biosynthesis [Coenzyme metabolism]
Probab=99.55 E-value=2.8e-11 Score=118.22 Aligned_cols=297 Identities=16% Similarity=0.131 Sum_probs=231.4
Q ss_pred HHHHHHHHcCChHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCC-HHHHHHHHHHHHHcCC
Q 003563 72 TLGLAHSALGNHKSAFDFYVIAAHLSPKDSALWKQLLTFAVQKGDTAQAMYYIRQAIRAEPKD-ISLRIHLASFYVEIGD 150 (810)
Q Consensus 72 ~l~~~~~~~g~~~~A~~~~~~a~~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~-~~~~~~la~~~~~~g~ 150 (810)
.-|..-+..|+|.+|.....++.+..+...-.+..-+.+.-+.|+.+.|-.++.++-+..+++ ......++.+....|+
T Consensus 89 ~egl~~l~eG~~~qAEkl~~rnae~~e~p~l~~l~aA~AA~qrgd~~~an~yL~eaae~~~~~~l~v~ltrarlll~~~d 168 (400)
T COG3071 89 NEGLLKLFEGDFQQAEKLLRRNAEHGEQPVLAYLLAAEAAQQRGDEDRANRYLAEAAELAGDDTLAVELTRARLLLNRRD 168 (400)
T ss_pred HHHHHHHhcCcHHHHHHHHHHhhhcCcchHHHHHHHHHHHHhcccHHHHHHHHHHHhccCCCchHHHHHHHHHHHHhCCC
Confidence 345566678999999999999888777767777777899999999999999999999985443 4567889999999999
Q ss_pred HHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHhhCCCCCC-hHHHHHHHH--HHHHcCCHHHHHHH
Q 003563 151 YEKAAESYEQIQKLFPDNVDATKTGAQLFLKCGQTARSIGILEEYLKVHPSDAD-LSVIDLLVA--ILMENNAYEKTLQH 227 (810)
Q Consensus 151 ~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~-~~~~~~la~--~~~~~g~~~~A~~~ 227 (810)
++.|.....++++..|.++.++.....+|...|++.+...++.+.-+..--+.. ..-+...+. ++...++-..+..
T Consensus 169 ~~aA~~~v~~ll~~~pr~~~vlrLa~r~y~~~g~~~~ll~~l~~L~ka~~l~~~e~~~le~~a~~glL~q~~~~~~~~g- 247 (400)
T COG3071 169 YPAARENVDQLLEMTPRHPEVLRLALRAYIRLGAWQALLAILPKLRKAGLLSDEEAARLEQQAWEGLLQQARDDNGSEG- 247 (400)
T ss_pred chhHHHHHHHHHHhCcCChHHHHHHHHHHHHhccHHHHHHHHHHHHHccCCChHHHHHHHHHHHHHHHHHHhccccchH-
Confidence 999999999999999999999999999999999999999999888765433221 111111111 1122222222222
Q ss_pred HHHHHHHhcCCCCCcHHHHHHHHHHHHhcCCHHHHHHHHHHhhccCCchhHhHHHHHHHHHHHcCCcHHHHHHHHHHHhc
Q 003563 228 IEHAQIVRFSGKELPLKLKVKAGICYLRLGNMEKAEILFADLQWKNAIDHADLITEVADTLMSLGHSNSALKYYHFLETN 307 (810)
Q Consensus 228 ~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~ 307 (810)
+....+..|..-...+.+...++.-+..+|+.++|.+..+..++..- ++.....++ ....+++..=++..++.+..
T Consensus 248 L~~~W~~~pr~lr~~p~l~~~~a~~li~l~~~~~A~~~i~~~Lk~~~--D~~L~~~~~--~l~~~d~~~l~k~~e~~l~~ 323 (400)
T COG3071 248 LKTWWKNQPRKLRNDPELVVAYAERLIRLGDHDEAQEIIEDALKRQW--DPRLCRLIP--RLRPGDPEPLIKAAEKWLKQ 323 (400)
T ss_pred HHHHHHhccHHhhcChhHHHHHHHHHHHcCChHHHHHHHHHHHHhcc--ChhHHHHHh--hcCCCCchHHHHHHHHHHHh
Confidence 22222222333455677888889999999999999999999987654 333222222 34667888888888888876
Q ss_pred cCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHhhcCCCHHHHHHHHHHHHHcCCHHHHHHhcCCCCC
Q 003563 308 AGTDNGYLYLKLAECYLSLKERAHAIMFFYKALDRFEDNIDARLTLASLLLEEAKEEEAITLLSPPKD 375 (810)
Q Consensus 308 ~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~ 375 (810)
.|++|.++..+|..+.+.+.+.+|..+|+.++...|+ ...+..+|.++.++|+..+|.+..++++.
T Consensus 324 -h~~~p~L~~tLG~L~~k~~~w~kA~~~leaAl~~~~s-~~~~~~la~~~~~~g~~~~A~~~r~e~L~ 389 (400)
T COG3071 324 -HPEDPLLLSTLGRLALKNKLWGKASEALEAALKLRPS-ASDYAELADALDQLGEPEEAEQVRREALL 389 (400)
T ss_pred -CCCChhHHHHHHHHHHHhhHHHHHHHHHHHHHhcCCC-hhhHHHHHHHHHHcCChHHHHHHHHHHHH
Confidence 8999999999999999999999999999999998876 56788999999999999999999887763
No 95
>COG5010 TadD Flp pilus assembly protein TadD, contains TPR repeats [Intracellular trafficking and secretion]
Probab=99.54 E-value=2.9e-12 Score=118.53 Aligned_cols=181 Identities=18% Similarity=0.192 Sum_probs=165.0
Q ss_pred CHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHH
Q 003563 48 NFEQAISLLKEVVRLSPNLPETYNTLGLAHSALGNHKSAFDFYVIAAHLSPKDSALWKQLLTFAVQKGDTAQAMYYIRQA 127 (810)
Q Consensus 48 ~~~~A~~~~~~~l~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~a 127 (810)
+...+...+-.....+|++..+ ..++..+...|+-+.+..+..++...+|.+...+..+|....+.|++.+|+..++++
T Consensus 48 q~~~a~~al~~~~~~~p~d~~i-~~~a~a~~~~G~a~~~l~~~~~~~~~~~~d~~ll~~~gk~~~~~g~~~~A~~~~rkA 126 (257)
T COG5010 48 QTQGAAAALGAAVLRNPEDLSI-AKLATALYLRGDADSSLAVLQKSAIAYPKDRELLAAQGKNQIRNGNFGEAVSVLRKA 126 (257)
T ss_pred hhhHHHHHHHHHHhcCcchHHH-HHHHHHHHhcccccchHHHHhhhhccCcccHHHHHHHHHHHHHhcchHHHHHHHHHH
Confidence 3344666677777889999999 999999999999999999999999999999999999999999999999999999999
Q ss_pred HHcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHhhCCCCCChHH
Q 003563 128 IRAEPKDISLRIHLASFYVEIGDYEKAAESYEQIQKLFPDNVDATKTGAQLFLKCGQTARSIGILEEYLKVHPSDADLSV 207 (810)
Q Consensus 128 l~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~ 207 (810)
....|+++.+|..+|.+|.+.|+++.|...|.+++++.|.++.+..++|..+.-.|+++.|..++..+....+.+.. +
T Consensus 127 ~~l~p~d~~~~~~lgaaldq~Gr~~~Ar~ay~qAl~L~~~~p~~~nNlgms~~L~gd~~~A~~lll~a~l~~~ad~~--v 204 (257)
T COG5010 127 ARLAPTDWEAWNLLGAALDQLGRFDEARRAYRQALELAPNEPSIANNLGMSLLLRGDLEDAETLLLPAYLSPAADSR--V 204 (257)
T ss_pred hccCCCChhhhhHHHHHHHHccChhHHHHHHHHHHHhccCCchhhhhHHHHHHHcCCHHHHHHHHHHHHhCCCCchH--H
Confidence 99999999999999999999999999999999999999999999999999999999999999999999887776665 7
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHH
Q 003563 208 IDLLVAILMENNAYEKTLQHIEHA 231 (810)
Q Consensus 208 ~~~la~~~~~~g~~~~A~~~~~~~ 231 (810)
..+++.+....|++++|.....+-
T Consensus 205 ~~NLAl~~~~~g~~~~A~~i~~~e 228 (257)
T COG5010 205 RQNLALVVGLQGDFREAEDIAVQE 228 (257)
T ss_pred HHHHHHHHhhcCChHHHHhhcccc
Confidence 889999999999999998876553
No 96
>KOG4340 consensus Uncharacterized conserved protein [Function unknown]
Probab=99.53 E-value=2.8e-11 Score=112.66 Aligned_cols=313 Identities=14% Similarity=0.027 Sum_probs=202.9
Q ss_pred HHHcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCHHHHHH
Q 003563 43 QYAYGNFEQAISLLKEVVRLSPNLPETYNTLGLAHSALGNHKSAFDFYVIAAHLSPKDSALWKQLLTFAVQKGDTAQAMY 122 (810)
Q Consensus 43 ~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~p~~~~~~~~la~~~~~~g~~~~A~~ 122 (810)
++...+|.+|++++..-.+.+|.+...+..+|.||+...++..|..+|++.-.+.|.........+..+++.+.+..|+.
T Consensus 20 lI~d~ry~DaI~~l~s~~Er~p~~rAgLSlLgyCYY~~Q~f~~AA~CYeQL~ql~P~~~qYrlY~AQSLY~A~i~ADALr 99 (459)
T KOG4340|consen 20 LIRDARYADAIQLLGSELERSPRSRAGLSLLGYCYYRLQEFALAAECYEQLGQLHPELEQYRLYQAQSLYKACIYADALR 99 (459)
T ss_pred HHHHhhHHHHHHHHHHHHhcCccchHHHHHHHHHHHHHHHHHHHHHHHHHHHhhChHHHHHHHHHHHHHHHhcccHHHHH
Confidence 36677778888887777777777777777888888888788888888888777777777777777777777777777777
Q ss_pred HHHHHHHcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHhhCCCC
Q 003563 123 YIRQAIRAEPKDISLRIHLASFYVEIGDYEKAAESYEQIQKLFPDNVDATKTGAQLFLKCGQTARSIGILEEYLKVHPSD 202 (810)
Q Consensus 123 ~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~ 202 (810)
..........-........+.+.+..+++..+....++.-. .++.+...+.|-+.++.|+++.|++-|+.+++...-+
T Consensus 100 V~~~~~D~~~L~~~~lqLqaAIkYse~Dl~g~rsLveQlp~--en~Ad~~in~gCllykegqyEaAvqkFqaAlqvsGyq 177 (459)
T KOG4340|consen 100 VAFLLLDNPALHSRVLQLQAAIKYSEGDLPGSRSLVEQLPS--ENEADGQINLGCLLYKEGQYEAAVQKFQAALQVSGYQ 177 (459)
T ss_pred HHHHhcCCHHHHHHHHHHHHHHhcccccCcchHHHHHhccC--CCccchhccchheeeccccHHHHHHHHHHHHhhcCCC
Confidence 76665432111123344455556666666666555444311 1345666777777777777777777777777766655
Q ss_pred CChHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhcCCCCCcHHHHHHHHHHHHhcCCHHHHHH--HHHHhhccCCchhHhH
Q 003563 203 ADLSVIDLLVAILMENNAYEKTLQHIEHAQIVRFSGKELPLKLKVKAGICYLRLGNMEKAEI--LFADLQWKNAIDHADL 280 (810)
Q Consensus 203 ~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~--~~~~~~~~~~~~~~~~ 280 (810)
+. +-++++.++++.|+++.|+++..+.++.--.+.|.. .+|. ..+.+. ....-+....+...++
T Consensus 178 pl--lAYniALaHy~~~qyasALk~iSEIieRG~r~HPEl-----gIGm-------~tegiDvrsvgNt~~lh~Sal~eA 243 (459)
T KOG4340|consen 178 PL--LAYNLALAHYSSRQYASALKHISEIIERGIRQHPEL-----GIGM-------TTEGIDVRSVGNTLVLHQSALVEA 243 (459)
T ss_pred ch--hHHHHHHHHHhhhhHHHHHHHHHHHHHhhhhcCCcc-----Cccc-------eeccCchhcccchHHHHHHHHHHH
Confidence 54 556677777777777777777776665511112211 0110 000000 0000000001123456
Q ss_pred HHHHHHHHHHcCCcHHHHHHHHHHHhcc-CCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHhhcCCCHHHHHHHHHHHHH
Q 003563 281 ITEVADTLMSLGHSNSALKYYHFLETNA-GTDNGYLYLKLAECYLSLKERAHAIMFFYKALDRFEDNIDARLTLASLLLE 359 (810)
Q Consensus 281 ~~~la~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~ 359 (810)
+...+.++++.++++.|.+.+..+--.. ..-+|..+.+++..- ..+++.+...-++-.++++|--++..-++-.+|.+
T Consensus 244 fNLKaAIeyq~~n~eAA~eaLtDmPPRaE~elDPvTLHN~Al~n-~~~~p~~g~~KLqFLL~~nPfP~ETFANlLllyCK 322 (459)
T KOG4340|consen 244 FNLKAAIEYQLRNYEAAQEALTDMPPRAEEELDPVTLHNQALMN-MDARPTEGFEKLQFLLQQNPFPPETFANLLLLYCK 322 (459)
T ss_pred hhhhhhhhhhcccHHHHHHHhhcCCCcccccCCchhhhHHHHhc-ccCCccccHHHHHHHHhcCCCChHHHHHHHHHHhh
Confidence 6777888999999999998875433221 123777888877654 34677788888888899999778888899999999
Q ss_pred cCCHHHHHHhcCC
Q 003563 360 EAKEEEAITLLSP 372 (810)
Q Consensus 360 ~g~~~~A~~~~~~ 372 (810)
..-++-|...+-+
T Consensus 323 Neyf~lAADvLAE 335 (459)
T KOG4340|consen 323 NEYFDLAADVLAE 335 (459)
T ss_pred hHHHhHHHHHHhh
Confidence 8889988887753
No 97
>PRK15359 type III secretion system chaperone protein SscB; Provisional
Probab=99.52 E-value=2.8e-13 Score=120.64 Aligned_cols=125 Identities=15% Similarity=0.131 Sum_probs=113.7
Q ss_pred HHHHHHHHhcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCC
Q 003563 87 FDFYVIAAHLSPKDSALWKQLLTFAVQKGDTAQAMYYIRQAIRAEPKDISLRIHLASFYVEIGDYEKAAESYEQIQKLFP 166 (810)
Q Consensus 87 ~~~~~~a~~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p 166 (810)
...++++++++|++ +..+|.++...|++++|+.+|++++..+|.+..++..+|.++...|++++|+..|++++.++|
T Consensus 13 ~~~~~~al~~~p~~---~~~~g~~~~~~g~~~~A~~~~~~al~~~P~~~~a~~~lg~~~~~~g~~~~A~~~y~~Al~l~p 89 (144)
T PRK15359 13 EDILKQLLSVDPET---VYASGYASWQEGDYSRAVIDFSWLVMAQPWSWRAHIALAGTWMMLKEYTTAINFYGHALMLDA 89 (144)
T ss_pred HHHHHHHHHcCHHH---HHHHHHHHHHcCCHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCC
Confidence 46788999998875 667899999999999999999999999999999999999999999999999999999999999
Q ss_pred CCHHHHHHHHHHHHHcCChHHHHHHHHHHHhhCCCCCChHHHHHHHHHHH
Q 003563 167 DNVDATKTGAQLFLKCGQTARSIGILEEYLKVHPSDADLSVIDLLVAILM 216 (810)
Q Consensus 167 ~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~~~la~~~~ 216 (810)
+++.++..+|.++...|++++|+..|+++++..|+++. .+..++.+..
T Consensus 90 ~~~~a~~~lg~~l~~~g~~~eAi~~~~~Al~~~p~~~~--~~~~~~~~~~ 137 (144)
T PRK15359 90 SHPEPVYQTGVCLKMMGEPGLAREAFQTAIKMSYADAS--WSEIRQNAQI 137 (144)
T ss_pred CCcHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChH--HHHHHHHHHH
Confidence 99999999999999999999999999999999999987 4556665544
No 98
>PRK10370 formate-dependent nitrite reductase complex subunit NrfG; Provisional
Probab=99.52 E-value=1.5e-12 Score=122.47 Aligned_cols=154 Identities=14% Similarity=0.174 Sum_probs=119.8
Q ss_pred HHHHHHcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCHHH
Q 003563 40 ASLQYAYGNFEQAISLLKEVVRLSPNLPETYNTLGLAHSALGNHKSAFDFYVIAAHLSPKDSALWKQLLTFAVQKGDTAQ 119 (810)
Q Consensus 40 a~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~p~~~~~~~~la~~~~~~g~~~~ 119 (810)
+-.|+..|+++......+... +|.. -+...++.++++..++++++.+|++.+.|..+|.++...|++++
T Consensus 23 ~~~Y~~~g~~~~v~~~~~~~~--~~~~---------~~~~~~~~~~~i~~l~~~L~~~P~~~~~w~~Lg~~~~~~g~~~~ 91 (198)
T PRK10370 23 VGSYLLSPKWQAVRAEYQRLA--DPLH---------QFASQQTPEAQLQALQDKIRANPQNSEQWALLGEYYLWRNDYDN 91 (198)
T ss_pred HHHHHHcchHHHHHHHHHHHh--Cccc---------cccCchhHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHCCCHHH
Confidence 455777788777544432221 1211 11125677888888888888888888888888888888888888
Q ss_pred HHHHHHHHHHcCCCCHHHHHHHHHHH-HHcCC--HHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHH
Q 003563 120 AMYYIRQAIRAEPKDISLRIHLASFY-VEIGD--YEKAAESYEQIQKLFPDNVDATKTGAQLFLKCGQTARSIGILEEYL 196 (810)
Q Consensus 120 A~~~~~~al~~~p~~~~~~~~la~~~-~~~g~--~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~l 196 (810)
|+.+|+++++++|+++.++..+|.++ ...|+ +++|...++++++.+|+++.++..+|..+...|++++|+..+++++
T Consensus 92 A~~a~~~Al~l~P~~~~~~~~lA~aL~~~~g~~~~~~A~~~l~~al~~dP~~~~al~~LA~~~~~~g~~~~Ai~~~~~aL 171 (198)
T PRK10370 92 ALLAYRQALQLRGENAELYAALATVLYYQAGQHMTPQTREMIDKALALDANEVTALMLLASDAFMQADYAQAIELWQKVL 171 (198)
T ss_pred HHHHHHHHHHhCCCCHHHHHHHHHHHHHhcCCCCcHHHHHHHHHHHHhCCCChhHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 88888888888888888888888864 66676 5888888888888888888888888888888888888888888888
Q ss_pred hhCCCCCC
Q 003563 197 KVHPSDAD 204 (810)
Q Consensus 197 ~~~p~~~~ 204 (810)
+..|.+.+
T Consensus 172 ~l~~~~~~ 179 (198)
T PRK10370 172 DLNSPRVN 179 (198)
T ss_pred hhCCCCcc
Confidence 88877665
No 99
>KOG2047 consensus mRNA splicing factor [RNA processing and modification]
Probab=99.51 E-value=7.8e-10 Score=113.86 Aligned_cols=537 Identities=13% Similarity=0.111 Sum_probs=334.9
Q ss_pred HHHHHHHHHHHHHhCCCChHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCC--CHHHHHHHHHHHHHcCCHHHHHHHHHH
Q 003563 49 FEQAISLLKEVVRLSPNLPETYNTLGLAHSALGNHKSAFDFYVIAAHLSPK--DSALWKQLLTFAVQKGDTAQAMYYIRQ 126 (810)
Q Consensus 49 ~~~A~~~~~~~l~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~p~--~~~~~~~la~~~~~~g~~~~A~~~~~~ 126 (810)
|..--.+|++++..-.+.|..|.........+|+...-...|.+|+..-|- +...|-..-......|-++-++..|++
T Consensus 84 ~~~vn~c~er~lv~mHkmpRIwl~Ylq~l~~Q~~iT~tR~tfdrALraLpvtqH~rIW~lyl~Fv~~~~lPets~rvyrR 163 (835)
T KOG2047|consen 84 YESVNNCFERCLVFMHKMPRIWLDYLQFLIKQGLITRTRRTFDRALRALPVTQHDRIWDLYLKFVESHGLPETSIRVYRR 163 (835)
T ss_pred HHHHHHHHHHHHHHHhcCCHHHHHHHHHHHhcchHHHHHHHHHHHHHhCchHhhccchHHHHHHHHhCCChHHHHHHHHH
Confidence 344445566666655567888999999999999999999999999987773 456777777777888899999999999
Q ss_pred HHHcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh-------CCCCHHHHHHHHHHHHHcCChHH---HHHHHHHHH
Q 003563 127 AIRAEPKDISLRIHLASFYVEIGDYEKAAESYEQIQKL-------FPDNVDATKTGAQLFLKCGQTAR---SIGILEEYL 196 (810)
Q Consensus 127 al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~-------~p~~~~~~~~la~~~~~~g~~~~---A~~~~~~~l 196 (810)
.++.+|... ......+...++.++|.+.+...+.. .+.+...|..+..+..+.-+.-. -...++..+
T Consensus 164 YLk~~P~~~---eeyie~L~~~d~~~eaa~~la~vln~d~f~sk~gkSn~qlw~elcdlis~~p~~~~slnvdaiiR~gi 240 (835)
T KOG2047|consen 164 YLKVAPEAR---EEYIEYLAKSDRLDEAAQRLATVLNQDEFVSKKGKSNHQLWLELCDLISQNPDKVQSLNVDAIIRGGI 240 (835)
T ss_pred HHhcCHHHH---HHHHHHHHhccchHHHHHHHHHhcCchhhhhhcccchhhHHHHHHHHHHhCcchhcccCHHHHHHhhc
Confidence 999998764 34456677889999999999888754 34455677777776665433322 234566667
Q ss_pred hhCCCCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhcCCCCCcHH-----HHHHHHHHHHhc-------C------C
Q 003563 197 KVHPSDADLSVIDLLVAILMENNAYEKTLQHIEHAQIVRFSGKELPLK-----LKVKAGICYLRL-------G------N 258 (810)
Q Consensus 197 ~~~p~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~-----~~~~la~~~~~~-------g------~ 258 (810)
...++... ..|..||..|.+.|.+++|...|++++...-.- .+... +.+.-..+...+ | +
T Consensus 241 ~rftDq~g-~Lw~SLAdYYIr~g~~ekarDvyeeai~~v~tv-rDFt~ifd~Ya~FEE~~~~~~me~a~~~~~n~ed~~d 318 (835)
T KOG2047|consen 241 RRFTDQLG-FLWCSLADYYIRSGLFEKARDVYEEAIQTVMTV-RDFTQIFDAYAQFEESCVAAKMELADEESGNEEDDVD 318 (835)
T ss_pred ccCcHHHH-HHHHHHHHHHHHhhhhHHHHHHHHHHHHhheeh-hhHHHHHHHHHHHHHHHHHHHHhhhhhcccChhhhhh
Confidence 77776654 378889999999999999999999887652100 00000 011101111111 1 1
Q ss_pred HHHHHHHHHH------------hhccCCchhHhHHHHHHHHHHHcCCcHHHHHHHHHHHhccCCC-----CHHHHHHHHH
Q 003563 259 MEKAEILFAD------------LQWKNAIDHADLITEVADTLMSLGHSNSALKYYHFLETNAGTD-----NGYLYLKLAE 321 (810)
Q Consensus 259 ~~~A~~~~~~------------~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~-----~~~~~~~la~ 321 (810)
.+-....|+. ++..+|. +..-|.... -+..|+..+-+..|..++..-+|. -..+|..+|.
T Consensus 319 l~~~~a~~e~lm~rr~~~lNsVlLRQn~~-nV~eW~kRV--~l~e~~~~~~i~tyteAv~~vdP~ka~Gs~~~Lw~~fak 395 (835)
T KOG2047|consen 319 LELHMARFESLMNRRPLLLNSVLLRQNPH-NVEEWHKRV--KLYEGNAAEQINTYTEAVKTVDPKKAVGSPGTLWVEFAK 395 (835)
T ss_pred HHHHHHHHHHHHhccchHHHHHHHhcCCc-cHHHHHhhh--hhhcCChHHHHHHHHHHHHccCcccCCCChhhHHHHHHH
Confidence 1222233333 2345553 666665544 445688889999999888765554 4568999999
Q ss_pred HHHHccCHHHHHHHHHHHHhhcCC----CHHHHHHHHHHHHHcCCHHHHHHhcCCCCCCCcccC-------CC--CCCCh
Q 003563 322 CYLSLKERAHAIMFFYKALDRFED----NIDARLTLASLLLEEAKEEEAITLLSPPKDLDSLDM-------NS--DKSNP 388 (810)
Q Consensus 322 ~~~~~g~~~~A~~~~~~al~~~p~----~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~-------~~--~~~~~ 388 (810)
.|...|+.+.|...|+++.+..=. -..+|..-|..-.+..+++.|+++++.+........ .+ ...
T Consensus 396 lYe~~~~l~~aRvifeka~~V~y~~v~dLa~vw~~waemElrh~~~~~Al~lm~~A~~vP~~~~~~~yd~~~pvQ~rl-- 473 (835)
T KOG2047|consen 396 LYENNGDLDDARVIFEKATKVPYKTVEDLAEVWCAWAEMELRHENFEAALKLMRRATHVPTNPELEYYDNSEPVQARL-- 473 (835)
T ss_pred HHHhcCcHHHHHHHHHHhhcCCccchHHHHHHHHHHHHHHHhhhhHHHHHHHHHhhhcCCCchhhhhhcCCCcHHHHH--
Confidence 999999999999999999987432 267888999999999999999999998765433211 00 001
Q ss_pred hhhHHHHHHHHHHHHHhcCCchhHHhhhhhhhhhhHHHHHHHHHhhhhhccchhhHHHHHhHhcCCCCCccccCCCCCCC
Q 003563 389 WWLNEKIIMKLCHIYRAKGMPEDFVDAIFPLVCESLCVEALRQKVKVKRRLTKGILQQRTKIYNNLPTDSILCGIRPAAP 468 (810)
Q Consensus 389 ~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 468 (810)
....+++...+......|-++.....|.++++--.. +++....-.-+++..
T Consensus 474 -hrSlkiWs~y~DleEs~gtfestk~vYdriidLria--------------TPqii~NyAmfLEeh-------------- 524 (835)
T KOG2047|consen 474 -HRSLKIWSMYADLEESLGTFESTKAVYDRIIDLRIA--------------TPQIIINYAMFLEEH-------------- 524 (835)
T ss_pred -HHhHHHHHHHHHHHHHhccHHHHHHHHHHHHHHhcC--------------CHHHHHHHHHHHHhh--------------
Confidence 012457788888888999999988899888855111 111111111111100
Q ss_pred chHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccccCCCCCCchhhhhccCCCCCCCCCCchhhHHHHHHHHHHHH-hh--
Q 003563 469 KSELLVAARARKKIQKKEALKEEKKALAKAAGVEWHSDDTDDESQQEAFREPPLPNLLKNEENQCLIIDLCKALA-SL-- 545 (810)
Q Consensus 469 ~~~~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~-- 545 (810)
..+ +....+..-|+. +.+.|.-+++...|-...+ +.
T Consensus 525 -------~yf------------eesFk~YErgI~----------------------LFk~p~v~diW~tYLtkfi~rygg 563 (835)
T KOG2047|consen 525 -------KYF------------EESFKAYERGIS----------------------LFKWPNVYDIWNTYLTKFIKRYGG 563 (835)
T ss_pred -------HHH------------HHHHHHHHcCCc----------------------cCCCccHHHHHHHHHHHHHHHhcC
Confidence 000 001111122332 2234444454443332222 22
Q ss_pred hcHHHHHHHHHHHHhhhhccCChhHHHHHHHhhhhhhccccCCchhHHHHHHHHHhCC-C-ChhHhHHHHHHHH-hhccc
Q 003563 546 QRYEEASEIINLSMRLAYNILPLEKKEELRSLGAKMAYDSTDPNHGFDCAKYILQLHP-Y-SLSAWNCYYKVLS-RMGKI 622 (810)
Q Consensus 546 ~~~~eA~~~~~~al~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~a~~~~r~~~~~~p-~-~~~~~~~~~~~~~-~~~~~ 622 (810)
-+.+.|..++++|++. .+++....+..+.+.+--.-|-...|+.+++++...-+ . ....||++..-.. -.|-
T Consensus 564 ~klEraRdLFEqaL~~----Cpp~~aKtiyLlYA~lEEe~GLar~amsiyerat~~v~~a~~l~myni~I~kaae~yGv- 638 (835)
T KOG2047|consen 564 TKLERARDLFEQALDG----CPPEHAKTIYLLYAKLEEEHGLARHAMSIYERATSAVKEAQRLDMYNIYIKKAAEIYGV- 638 (835)
T ss_pred CCHHHHHHHHHHHHhc----CCHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHhCC-
Confidence 3788899999999963 45666666666665554444666778888888766522 2 2556666632111 1111
Q ss_pred ccccchhhHHHHHHHHhcCCCCCchh-h-hcchhhhccchHHHHHHHHHHHhhC
Q 003563 623 NSKHSKHSKFIRYLRAKYKDCVPPII-I-SGHQFTMASHHQDAARCYLEAYKLL 674 (810)
Q Consensus 623 ~~~~~~~~~~~~~~~~~~p~~~~~~~-~-~g~~~~~~~~~~~Ai~~y~~a~~~~ 674 (810)
..-...+.+.++.-|++..-.+ + .+..-...|....|-..|...-++.
T Consensus 639 ----~~TR~iYekaIe~Lp~~~~r~mclrFAdlEtklGEidRARaIya~~sq~~ 688 (835)
T KOG2047|consen 639 ----PRTREIYEKAIESLPDSKAREMCLRFADLETKLGEIDRARAIYAHGSQIC 688 (835)
T ss_pred ----cccHHHHHHHHHhCChHHHHHHHHHHHHHhhhhhhHHHHHHHHHhhhhcC
Confidence 2334455566666665543322 2 2555556666677777766655553
No 100
>PRK10370 formate-dependent nitrite reductase complex subunit NrfG; Provisional
Probab=99.50 E-value=1.1e-12 Score=123.34 Aligned_cols=126 Identities=23% Similarity=0.274 Sum_probs=119.4
Q ss_pred cCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCCCHHHHHHHHHHH-HHcCC--HHHHHH
Q 003563 46 YGNFEQAISLLKEVVRLSPNLPETYNTLGLAHSALGNHKSAFDFYVIAAHLSPKDSALWKQLLTFA-VQKGD--TAQAMY 122 (810)
Q Consensus 46 ~g~~~~A~~~~~~~l~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~p~~~~~~~~la~~~-~~~g~--~~~A~~ 122 (810)
.++.++++..++++++.+|++++.|..+|.+|...|++++|+..|++++.++|+++..+..+|.++ ...|+ +++|..
T Consensus 52 ~~~~~~~i~~l~~~L~~~P~~~~~w~~Lg~~~~~~g~~~~A~~a~~~Al~l~P~~~~~~~~lA~aL~~~~g~~~~~~A~~ 131 (198)
T PRK10370 52 QQTPEAQLQALQDKIRANPQNSEQWALLGEYYLWRNDYDNALLAYRQALQLRGENAELYAALATVLYYQAGQHMTPQTRE 131 (198)
T ss_pred chhHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcCCCCcHHHHH
Confidence 677899999999999999999999999999999999999999999999999999999999999975 67787 599999
Q ss_pred HHHHHHHcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHH
Q 003563 123 YIRQAIRAEPKDISLRIHLASFYVEIGDYEKAAESYEQIQKLFPDNVDA 171 (810)
Q Consensus 123 ~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~ 171 (810)
.++++++.+|+++.++..+|..+...|++++|+..++++++..|.+.+-
T Consensus 132 ~l~~al~~dP~~~~al~~LA~~~~~~g~~~~Ai~~~~~aL~l~~~~~~r 180 (198)
T PRK10370 132 MIDKALALDANEVTALMLLASDAFMQADYAQAIELWQKVLDLNSPRVNR 180 (198)
T ss_pred HHHHHHHhCCCChhHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCccH
Confidence 9999999999999999999999999999999999999999998876543
No 101
>PRK14720 transcript cleavage factor/unknown domain fusion protein; Provisional
Probab=99.48 E-value=1e-11 Score=138.07 Aligned_cols=225 Identities=10% Similarity=-0.001 Sum_probs=124.6
Q ss_pred CHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCCCHHHHHHHHH
Q 003563 30 SPGVTKMLGEASLQYAYGNFEQAISLLKEVVRLSPNLPETYNTLGLAHSALGNHKSAFDFYVIAAHLSPKDSALWKQLLT 109 (810)
Q Consensus 30 ~~~~~~~l~~a~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~p~~~~~~~~la~ 109 (810)
|.....+...+..+...|++++|+.+++..++.+|+....++.+|.++.+.+++.+|... .++...+.+.
T Consensus 28 p~n~~a~~~Li~~~~~~~~~deai~i~~~~l~~~P~~i~~yy~~G~l~~q~~~~~~~~lv--~~l~~~~~~~-------- 97 (906)
T PRK14720 28 LSKFKELDDLIDAYKSENLTDEAKDICEEHLKEHKKSISALYISGILSLSRRPLNDSNLL--NLIDSFSQNL-------- 97 (906)
T ss_pred cchHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCcceehHHHHHHHHHhhcchhhhhhh--hhhhhccccc--------
Confidence 345566677777888999999999999999999999999999999999998887776655 4444444333
Q ss_pred HHHHcCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCChHHHH
Q 003563 110 FAVQKGDTAQAMYYIRQAIRAEPKDISLRIHLASFYVEIGDYEKAAESYEQIQKLFPDNVDATKTGAQLFLKCGQTARSI 189 (810)
Q Consensus 110 ~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~ 189 (810)
++ .++.++...+...+.+..+++.+|.||-++|+.++|...|+++++.+|+++.++.++|..|... +.++|+
T Consensus 98 ------~~-~~ve~~~~~i~~~~~~k~Al~~LA~~Ydk~g~~~ka~~~yer~L~~D~~n~~aLNn~AY~~ae~-dL~KA~ 169 (906)
T PRK14720 98 ------KW-AIVEHICDKILLYGENKLALRTLAEAYAKLNENKKLKGVWERLVKADRDNPEIVKKLATSYEEE-DKEKAI 169 (906)
T ss_pred ------ch-hHHHHHHHHHHhhhhhhHHHHHHHHHHHHcCChHHHHHHHHHHHhcCcccHHHHHHHHHHHHHh-hHHHHH
Confidence 22 2222333233333444445555555555555555555555555555555555555555555555 555555
Q ss_pred HHHHHHHhhCCCCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhcCC----------------CCCcHHHHHHHHHHH
Q 003563 190 GILEEYLKVHPSDADLSVIDLLVAILMENNAYEKTLQHIEHAQIVRFSG----------------KELPLKLKVKAGICY 253 (810)
Q Consensus 190 ~~~~~~l~~~p~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~----------------~~~~~~~~~~la~~~ 253 (810)
+++.+++.. +...+++.++..+..+.+...+.+ .......+.-+-.+|
T Consensus 170 ~m~~KAV~~----------------~i~~kq~~~~~e~W~k~~~~~~~d~d~f~~i~~ki~~~~~~~~~~~~~~~l~~~y 233 (906)
T PRK14720 170 TYLKKAIYR----------------FIKKKQYVGIEEIWSKLVHYNSDDFDFFLRIERKVLGHREFTRLVGLLEDLYEPY 233 (906)
T ss_pred HHHHHHHHH----------------HHhhhcchHHHHHHHHHHhcCcccchHHHHHHHHHHhhhccchhHHHHHHHHHHH
Confidence 555544432 222233333333333333331000 111122233333445
Q ss_pred HhcCCHHHHHHHHHHhhccCCchhHhHHHHHHHHHH
Q 003563 254 LRLGNMEKAEILFADLQWKNAIDHADLITEVADTLM 289 (810)
Q Consensus 254 ~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~la~~~~ 289 (810)
...+++++++.+++.++...+. +..+...++.+|.
T Consensus 234 ~~~~~~~~~i~iLK~iL~~~~~-n~~a~~~l~~~y~ 268 (906)
T PRK14720 234 KALEDWDEVIYILKKILEHDNK-NNKAREELIRFYK 268 (906)
T ss_pred hhhhhhhHHHHHHHHHHhcCCc-chhhHHHHHHHHH
Confidence 5556666666666666655553 4555555555554
No 102
>PRK04841 transcriptional regulator MalT; Provisional
Probab=99.47 E-value=1.2e-10 Score=139.54 Aligned_cols=377 Identities=13% Similarity=0.013 Sum_probs=268.6
Q ss_pred HHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHcCChHHHHHHHHHHH-hcCCCCHHHHHHHHHHHHHcCCH
Q 003563 39 EASLQYAYGNFEQAISLLKEVVRLSPNLPETYNTLGLAHSALGNHKSAFDFYVIAA-HLSPKDSALWKQLLTFAVQKGDT 117 (810)
Q Consensus 39 ~a~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~-~~~p~~~~~~~~la~~~~~~g~~ 117 (810)
.|..+...|++.+|+..+..+-.. +.-.......+......|++..+..++..+- .....++......+.++...|++
T Consensus 347 aa~~~~~~g~~~~Al~~a~~a~d~-~~~~~ll~~~a~~l~~~g~~~~l~~~l~~lp~~~~~~~~~l~~~~a~~~~~~g~~ 425 (903)
T PRK04841 347 AAEAWLAQGFPSEAIHHALAAGDA-QLLRDILLQHGWSLFNQGELSLLEECLNALPWEVLLENPRLVLLQAWLAQSQHRY 425 (903)
T ss_pred HHHHHHHCCCHHHHHHHHHHCCCH-HHHHHHHHHhHHHHHhcCChHHHHHHHHhCCHHHHhcCcchHHHHHHHHHHCCCH
Confidence 455677789999888766654111 1122344556777778899888777765431 11123444556778888899999
Q ss_pred HHHHHHHHHHHHcCCC---------CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCH-----HHHHHHHHHHHHcC
Q 003563 118 AQAMYYIRQAIRAEPK---------DISLRIHLASFYVEIGDYEKAAESYEQIQKLFPDNV-----DATKTGAQLFLKCG 183 (810)
Q Consensus 118 ~~A~~~~~~al~~~p~---------~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~-----~~~~~la~~~~~~g 183 (810)
++|...+..+....+. .......++.++...|++++|...+++++...|... .+...+|.++...|
T Consensus 426 ~~a~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~a~~~lg~~~~~~G 505 (903)
T PRK04841 426 SEVNTLLARAEQELKDRNIELDGTLQAEFNALRAQVAINDGDPEEAERLAELALAELPLTWYYSRIVATSVLGEVHHCKG 505 (903)
T ss_pred HHHHHHHHHHHHhccccCcccchhHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHhcCCCccHHHHHHHHHHHHHHHHHcC
Confidence 9999999988764321 123445678888999999999999999998655432 34567888999999
Q ss_pred ChHHHHHHHHHHHhhCCCCCC----hHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhcCCC----CCcHHHHHHHHHHHHh
Q 003563 184 QTARSIGILEEYLKVHPSDAD----LSVIDLLVAILMENNAYEKTLQHIEHAQIVRFSGK----ELPLKLKVKAGICYLR 255 (810)
Q Consensus 184 ~~~~A~~~~~~~l~~~p~~~~----~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~----~~~~~~~~~la~~~~~ 255 (810)
++++|...+++++........ ..++..++.++...|++++|...+++++....... +....+...+|.++..
T Consensus 506 ~~~~A~~~~~~al~~~~~~g~~~~~~~~~~~la~~~~~~G~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~ 585 (903)
T PRK04841 506 ELARALAMMQQTEQMARQHDVYHYALWSLLQQSEILFAQGFLQAAYETQEKAFQLIEEQHLEQLPMHEFLLRIRAQLLWE 585 (903)
T ss_pred CHHHHHHHHHHHHHHHhhhcchHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHhccccccHHHHHHHHHHHHHHH
Confidence 999999999999876443222 23566789999999999999999999988643221 1123345677888999
Q ss_pred cCCHHHHHHHHHHhhccC----CchhHhHHHHHHHHHHHcCCcHHHHHHHHHHHhccC-CC-CHHHH----HHHHHHHHH
Q 003563 256 LGNMEKAEILFADLQWKN----AIDHADLITEVADTLMSLGHSNSALKYYHFLETNAG-TD-NGYLY----LKLAECYLS 325 (810)
Q Consensus 256 ~g~~~~A~~~~~~~~~~~----~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~-~~-~~~~~----~~la~~~~~ 325 (810)
.|++++|...+.+++... +......+..++.++...|++++|...+.++..... .. ..... ......+..
T Consensus 586 ~G~~~~A~~~~~~al~~~~~~~~~~~~~~~~~la~~~~~~G~~~~A~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~ 665 (903)
T PRK04841 586 WARLDEAEQCARKGLEVLSNYQPQQQLQCLAMLAKISLARGDLDNARRYLNRLENLLGNGRYHSDWIANADKVRLIYWQM 665 (903)
T ss_pred hcCHHHHHHHHHHhHHhhhccCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhcccccHhHhhHHHHHHHHHHHH
Confidence 999999999999875531 222455677789999999999999999998865411 11 11111 112344556
Q ss_pred ccCHHHHHHHHHHHHhhcCCCH----HHHHHHHHHHHHcCCHHHHHHhcCCCCCCCcccCCCCCCChhhhHHHHHHHHHH
Q 003563 326 LKERAHAIMFFYKALDRFEDNI----DARLTLASLLLEEAKEEEAITLLSPPKDLDSLDMNSDKSNPWWLNEKIIMKLCH 401 (810)
Q Consensus 326 ~g~~~~A~~~~~~al~~~p~~~----~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~la~ 401 (810)
.|+.+.|...+.......+... ..+..++.++...|++++|...+++++........ ......++..+|.
T Consensus 666 ~g~~~~A~~~l~~~~~~~~~~~~~~~~~~~~~a~~~~~~g~~~~A~~~l~~al~~~~~~g~------~~~~a~~~~~la~ 739 (903)
T PRK04841 666 TGDKEAAANWLRQAPKPEFANNHFLQGQWRNIARAQILLGQFDEAEIILEELNENARSLRL------MSDLNRNLILLNQ 739 (903)
T ss_pred CCCHHHHHHHHHhcCCCCCccchhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhCc------hHHHHHHHHHHHH
Confidence 8899999999877665333222 22467899999999999999999998876433211 1123467888999
Q ss_pred HHHhcCCchhHHhhhhhhhhh
Q 003563 402 IYRAKGMPEDFVDAIFPLVCE 422 (810)
Q Consensus 402 ~~~~~g~~~~A~~~~~~~l~~ 422 (810)
++...|+.++|...+.++++.
T Consensus 740 a~~~~G~~~~A~~~L~~Al~l 760 (903)
T PRK04841 740 LYWQQGRKSEAQRVLLEALKL 760 (903)
T ss_pred HHHHcCCHHHHHHHHHHHHHH
Confidence 999999999999999999866
No 103
>PRK14720 transcript cleavage factor/unknown domain fusion protein; Provisional
Probab=99.47 E-value=1.6e-11 Score=136.51 Aligned_cols=264 Identities=16% Similarity=0.109 Sum_probs=189.8
Q ss_pred hCCCChHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHHHHHHH
Q 003563 62 LSPNLPETYNTLGLAHSALGNHKSAFDFYVIAAHLSPKDSALWKQLLTFAVQKGDTAQAMYYIRQAIRAEPKDISLRIHL 141 (810)
Q Consensus 62 ~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l 141 (810)
.+|.+..++..++..+...|++++|+..++.+++..|+....++.+|.++.+.+++.+|... .++...+
T Consensus 26 ~~p~n~~a~~~Li~~~~~~~~~deai~i~~~~l~~~P~~i~~yy~~G~l~~q~~~~~~~~lv--~~l~~~~--------- 94 (906)
T PRK14720 26 YSLSKFKELDDLIDAYKSENLTDEAKDICEEHLKEHKKSISALYISGILSLSRRPLNDSNLL--NLIDSFS--------- 94 (906)
T ss_pred CCcchHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCcceehHHHHHHHHHhhcchhhhhhh--hhhhhcc---------
Confidence 47889999999999999999999999999999999999999999999999999987776655 4444433
Q ss_pred HHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHhhCCCCCChHHHHHHHHHHHHcCCH
Q 003563 142 ASFYVEIGDYEKAAESYEQIQKLFPDNVDATKTGAQLFLKCGQTARSIGILEEYLKVHPSDADLSVIDLLVAILMENNAY 221 (810)
Q Consensus 142 a~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~~~la~~~~~~g~~ 221 (810)
...++ .+++++...+...+++..+++.+|.+|-++|+.++|...|+++++.+|+++. +++++|..|... +.
T Consensus 95 -----~~~~~-~~ve~~~~~i~~~~~~k~Al~~LA~~Ydk~g~~~ka~~~yer~L~~D~~n~~--aLNn~AY~~ae~-dL 165 (906)
T PRK14720 95 -----QNLKW-AIVEHICDKILLYGENKLALRTLAEAYAKLNENKKLKGVWERLVKADRDNPE--IVKKLATSYEEE-DK 165 (906)
T ss_pred -----cccch-hHHHHHHHHHHhhhhhhHHHHHHHHHHHHcCChHHHHHHHHHHHhcCcccHH--HHHHHHHHHHHh-hH
Confidence 33344 5666666666678888889999999999999999999999999999999987 899999999999 99
Q ss_pred HHHHHHHHHHHHHhcCCCCCcHHHHHHHHHHHHhcCCHHHHHHHHHHhhccCCchhHhHHHHHHHHH-HHcCCcHHHHHH
Q 003563 222 EKTLQHIEHAQIVRFSGKELPLKLKVKAGICYLRLGNMEKAEILFADLQWKNAIDHADLITEVADTL-MSLGHSNSALKY 300 (810)
Q Consensus 222 ~~A~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~la~~~-~~~~~~~~A~~~ 300 (810)
++|+.++.+++.. +...+++.++..++.+++..+|. +.+.+..+-... ...| +
T Consensus 166 ~KA~~m~~KAV~~------------------~i~~kq~~~~~e~W~k~~~~~~~-d~d~f~~i~~ki~~~~~-~------ 219 (906)
T PRK14720 166 EKAITYLKKAIYR------------------FIKKKQYVGIEEIWSKLVHYNSD-DFDFFLRIERKVLGHRE-F------ 219 (906)
T ss_pred HHHHHHHHHHHHH------------------HHhhhcchHHHHHHHHHHhcCcc-cchHHHHHHHHHHhhhc-c------
Confidence 9999999999876 45556777777777777666654 333322221111 1111 1
Q ss_pred HHHHHhccCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHhhcCCCHHHHHHHHHHHHHc--------------------
Q 003563 301 YHFLETNAGTDNGYLYLKLAECYLSLKERAHAIMFFYKALDRFEDNIDARLTLASLLLEE-------------------- 360 (810)
Q Consensus 301 ~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~-------------------- 360 (810)
......+.-+-.+|...+++++++..++.+++.+|+|..++..++.+|...
T Consensus 220 ---------~~~~~~~~~l~~~y~~~~~~~~~i~iLK~iL~~~~~n~~a~~~l~~~y~~kY~~~~~~ee~l~~s~l~~~~ 290 (906)
T PRK14720 220 ---------TRLVGLLEDLYEPYKALEDWDEVIYILKKILEHDNKNNKAREELIRFYKEKYKDHSLLEDYLKMSDIGNNR 290 (906)
T ss_pred ---------chhHHHHHHHHHHHhhhhhhhHHHHHHHHHHhcCCcchhhHHHHHHHHHHHccCcchHHHHHHHhccccCC
Confidence 112223334445555556666666666666666666655555555555421
Q ss_pred CCHHHHHHhcCCCCCCCccc
Q 003563 361 AKEEEAITLLSPPKDLDSLD 380 (810)
Q Consensus 361 g~~~~A~~~~~~a~~~~~~~ 380 (810)
..+..|+..|++.+..++++
T Consensus 291 ~~~~~~i~~fek~i~f~~G~ 310 (906)
T PRK14720 291 KPVKDCIADFEKNIVFDTGN 310 (906)
T ss_pred ccHHHHHHHHHHHeeecCCC
Confidence 23456666666666555544
No 104
>COG5010 TadD Flp pilus assembly protein TadD, contains TPR repeats [Intracellular trafficking and secretion]
Probab=99.46 E-value=1.2e-11 Score=114.56 Aligned_cols=178 Identities=16% Similarity=0.170 Sum_probs=165.9
Q ss_pred HHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC
Q 003563 86 AFDFYVIAAHLSPKDSALWKQLLTFAVQKGDTAQAMYYIRQAIRAEPKDISLRIHLASFYVEIGDYEKAAESYEQIQKLF 165 (810)
Q Consensus 86 A~~~~~~a~~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~ 165 (810)
+...+-.....+|++..+ ..++..+...|+-+.+..+..++....|.+...+..+|......|++..|+..++++....
T Consensus 52 a~~al~~~~~~~p~d~~i-~~~a~a~~~~G~a~~~l~~~~~~~~~~~~d~~ll~~~gk~~~~~g~~~~A~~~~rkA~~l~ 130 (257)
T COG5010 52 AAAALGAAVLRNPEDLSI-AKLATALYLRGDADSSLAVLQKSAIAYPKDRELLAAQGKNQIRNGNFGEAVSVLRKAARLA 130 (257)
T ss_pred HHHHHHHHHhcCcchHHH-HHHHHHHHhcccccchHHHHhhhhccCcccHHHHHHHHHHHHHhcchHHHHHHHHHHhccC
Confidence 666677777889999999 9999999999999999999999999999999999899999999999999999999999999
Q ss_pred CCCHHHHHHHHHHHHHcCChHHHHHHHHHHHhhCCCCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhcCCCCCcHHH
Q 003563 166 PDNVDATKTGAQLFLKCGQTARSIGILEEYLKVHPSDADLSVIDLLVAILMENNAYEKTLQHIEHAQIVRFSGKELPLKL 245 (810)
Q Consensus 166 p~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~ 245 (810)
|++.++|..+|.+|.+.|++++|...|.+++++.|.++. +.+++|..+.-.|+++.|..++..+... .+.+..+
T Consensus 131 p~d~~~~~~lgaaldq~Gr~~~Ar~ay~qAl~L~~~~p~--~~nNlgms~~L~gd~~~A~~lll~a~l~----~~ad~~v 204 (257)
T COG5010 131 PTDWEAWNLLGAALDQLGRFDEARRAYRQALELAPNEPS--IANNLGMSLLLRGDLEDAETLLLPAYLS----PAADSRV 204 (257)
T ss_pred CCChhhhhHHHHHHHHccChhHHHHHHHHHHHhccCCch--hhhhHHHHHHHcCCHHHHHHHHHHHHhC----CCCchHH
Confidence 999999999999999999999999999999999999987 7899999999999999999999999877 5667888
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHhh
Q 003563 246 KVKAGICYLRLGNMEKAEILFADLQ 270 (810)
Q Consensus 246 ~~~la~~~~~~g~~~~A~~~~~~~~ 270 (810)
..+++.+....|++++|.....+-+
T Consensus 205 ~~NLAl~~~~~g~~~~A~~i~~~e~ 229 (257)
T COG5010 205 RQNLALVVGLQGDFREAEDIAVQEL 229 (257)
T ss_pred HHHHHHHHhhcCChHHHHhhccccc
Confidence 9999999999999999998877643
No 105
>KOG1130 consensus Predicted G-alpha GTPase interaction protein, contains GoLoco domain [Signal transduction mechanisms]
Probab=99.43 E-value=4.2e-12 Score=123.22 Aligned_cols=319 Identities=16% Similarity=0.121 Sum_probs=212.0
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCh----HHHHHHHHHHHHcCChHHHHHHHHHHHhc----C--CCCHH
Q 003563 33 VTKMLGEASLQYAYGNFEQAISLLKEVVRLSPNLP----ETYNTLGLAHSALGNHKSAFDFYVIAAHL----S--PKDSA 102 (810)
Q Consensus 33 ~~~~l~~a~~~~~~g~~~~A~~~~~~~l~~~p~~~----~~~~~l~~~~~~~g~~~~A~~~~~~a~~~----~--p~~~~ 102 (810)
-..+-..|..+++.|++...+..|+.+++.-.++. .+|..||.+|+..++|++|+++-..=+.+ . -..+.
T Consensus 17 CleLalEGERLck~gdcraGv~ff~aA~qvGTeDl~tLSAIYsQLGNAyfyL~DY~kAl~yH~hDltlar~lgdklGEAK 96 (639)
T KOG1130|consen 17 CLELALEGERLCKMGDCRAGVDFFKAALQVGTEDLSTLSAIYSQLGNAYFYLKDYEKALKYHTHDLTLARLLGDKLGEAK 96 (639)
T ss_pred HHHHHHHHHHHHhccchhhhHHHHHHHHHhcchHHHHHHHHHHHhcchhhhHhhHHHHHhhhhhhHHHHHHhcchhcccc
Confidence 45566778889999999999999999998876653 45778899999999999998875433222 1 12334
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHcCC------CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHH
Q 003563 103 LWKQLLTFAVQKGDTAQAMYYIRQAIRAEP------KDISLRIHLASFYVEIGDYEKAAESYEQIQKLFPDNVDATKTGA 176 (810)
Q Consensus 103 ~~~~la~~~~~~g~~~~A~~~~~~al~~~p------~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~la 176 (810)
..-++|..+.-+|.|++|+.|..+-+.+.. ....+++++|.+|...|+.-.-..--+ ...-+.++.
T Consensus 97 ssgNLGNtlKv~G~fdeA~~cc~rhLd~areLgDrv~e~RAlYNlgnvYhakGk~~g~~~pee----~g~f~~ev~---- 168 (639)
T KOG1130|consen 97 SSGNLGNTLKVKGAFDEALTCCFRHLDFARELGDRVLESRALYNLGNVYHAKGKCTGLEAPEE----KGAFNAEVT---- 168 (639)
T ss_pred ccccccchhhhhcccchHHHHHHHHhHHHHHHhHHHhhhHHHhhhhhhhhhcccccCCCChhh----cccccHHHH----
Confidence 556788888888999999888887766432 234578888888887775311000000 000000110
Q ss_pred HHHHHcCChHHHHHHHHHHHhhCCCCCC----hHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhcCC--CCCcHHHHHHHH
Q 003563 177 QLFLKCGQTARSIGILEEYLKVHPSDAD----LSVIDLLVAILMENNAYEKTLQHIEHAQIVRFSG--KELPLKLKVKAG 250 (810)
Q Consensus 177 ~~~~~~g~~~~A~~~~~~~l~~~p~~~~----~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~--~~~~~~~~~~la 250 (810)
..++.|.++|..-+++.....+ -.++-++|..|+-+|+|+.|+..-+.-+.+...- ......++.++|
T Consensus 169 ------~al~~Av~fy~eNL~l~~~lgDr~aqGRa~GnLGNTyYlLGdf~~ai~~H~~RL~ia~efGDrAaeRRA~sNlg 242 (639)
T KOG1130|consen 169 ------SALENAVKFYMENLELSEKLGDRLAQGRAYGNLGNTYYLLGDFDQAIHFHKLRLEIAQEFGDRAAERRAHSNLG 242 (639)
T ss_pred ------HHHHHHHHHHHHHHHHHHHhhhHHhhcchhcccCceeeeeccHHHHHHHHHHHHHHHHHhhhHHHHHHhhcccc
Confidence 1122333444433333221111 1356678888888889988888777655542111 112235677888
Q ss_pred HHHHhcCCHHHHHHHHHHhhc-----cCCchhHhHHHHHHHHHHHcCCcHHHHHHHHHHHhcc-----CCCCHHHHHHHH
Q 003563 251 ICYLRLGNMEKAEILFADLQW-----KNAIDHADLITEVADTLMSLGHSNSALKYYHFLETNA-----GTDNGYLYLKLA 320 (810)
Q Consensus 251 ~~~~~~g~~~~A~~~~~~~~~-----~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~-----~~~~~~~~~~la 320 (810)
.++.-+|+++.|+++|+..+. .+........+.+|..|.-..++++|+.++.+-+.+. .-....+++.+|
T Consensus 243 N~hiflg~fe~A~ehYK~tl~LAielg~r~vEAQscYSLgNtytll~e~~kAI~Yh~rHLaIAqeL~DriGe~RacwSLg 322 (639)
T KOG1130|consen 243 NCHIFLGNFELAIEHYKLTLNLAIELGNRTVEAQSCYSLGNTYTLLKEVQKAITYHQRHLAIAQELEDRIGELRACWSLG 322 (639)
T ss_pred hhhhhhcccHhHHHHHHHHHHHHHHhcchhHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHH
Confidence 999999999999999888543 1223356678899999999999999999998744331 234667889999
Q ss_pred HHHHHccCHHHHHHHHHHHHhhc-----CC-CHHHHHHHHHHHHHcCCHHH
Q 003563 321 ECYLSLKERAHAIMFFYKALDRF-----ED-NIDARLTLASLLLEEAKEEE 365 (810)
Q Consensus 321 ~~~~~~g~~~~A~~~~~~al~~~-----p~-~~~~~~~la~~~~~~g~~~~ 365 (810)
..+..+|..++|+.+.++.++.. |. ...+..++...-...|..+.
T Consensus 323 na~~alg~h~kAl~fae~hl~~s~ev~D~sgelTar~Nlsdl~~~lG~~ds 373 (639)
T KOG1130|consen 323 NAFNALGEHRKALYFAELHLRSSLEVNDTSGELTARDNLSDLILELGQEDS 373 (639)
T ss_pred HHHHhhhhHHHHHHHHHHHHHHHHHhCCcchhhhhhhhhHHHHHHhCCCcc
Confidence 99999999999999888877652 22 34567778887777776543
No 106
>KOG1130 consensus Predicted G-alpha GTPase interaction protein, contains GoLoco domain [Signal transduction mechanisms]
Probab=99.42 E-value=4.2e-12 Score=123.22 Aligned_cols=282 Identities=13% Similarity=0.088 Sum_probs=168.3
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHh------CCCChHHHHHHHHHHHHcCChHHHHHHHHHHHhcCC------CCHHH
Q 003563 36 MLGEASLQYAYGNFEQAISLLKEVVRL------SPNLPETYNTLGLAHSALGNHKSAFDFYVIAAHLSP------KDSAL 103 (810)
Q Consensus 36 ~l~~a~~~~~~g~~~~A~~~~~~~l~~------~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~p------~~~~~ 103 (810)
+-+.|+.|+-.++|++|+++-.--+.. .-..+.+.-.||.++-..|.|++|+.+..+-+.+.. ....+
T Consensus 58 YsQLGNAyfyL~DY~kAl~yH~hDltlar~lgdklGEAKssgNLGNtlKv~G~fdeA~~cc~rhLd~areLgDrv~e~RA 137 (639)
T KOG1130|consen 58 YSQLGNAYFYLKDYEKALKYHTHDLTLARLLGDKLGEAKSSGNLGNTLKVKGAFDEALTCCFRHLDFARELGDRVLESRA 137 (639)
T ss_pred HHHhcchhhhHhhHHHHHhhhhhhHHHHHHhcchhccccccccccchhhhhcccchHHHHHHHHhHHHHHHhHHHhhhHH
Confidence 346789999999999999875443322 222455677899999999999999999888765532 24578
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC------CHHHHHHHHH
Q 003563 104 WKQLLTFAVQKGDTAQAMYYIRQAIRAEPKDISLRIHLASFYVEIGDYEKAAESYEQIQKLFPD------NVDATKTGAQ 177 (810)
Q Consensus 104 ~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~------~~~~~~~la~ 177 (810)
++++|.+|...|+.-.- ..|.+...+..- -...++.|.++|..-+++... ...++-++|.
T Consensus 138 lYNlgnvYhakGk~~g~---------~~pee~g~f~~e-----v~~al~~Av~fy~eNL~l~~~lgDr~aqGRa~GnLGN 203 (639)
T KOG1130|consen 138 LYNLGNVYHAKGKCTGL---------EAPEEKGAFNAE-----VTSALENAVKFYMENLELSEKLGDRLAQGRAYGNLGN 203 (639)
T ss_pred HhhhhhhhhhcccccCC---------CChhhcccccHH-----HHHHHHHHHHHHHHHHHHHHHhhhHHhhcchhcccCc
Confidence 99999999988862110 011100000000 001123333333333332211 1234555666
Q ss_pred HHHHcCChHHHHHHHHHHHhhCCCCC----ChHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhc--CCCCCcHHHHHHHHH
Q 003563 178 LFLKCGQTARSIGILEEYLKVHPSDA----DLSVIDLLVAILMENNAYEKTLQHIEHAQIVRF--SGKELPLKLKVKAGI 251 (810)
Q Consensus 178 ~~~~~g~~~~A~~~~~~~l~~~p~~~----~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~--~~~~~~~~~~~~la~ 251 (810)
.|+-+|+++.|+..-+.-+.+..... .-.++.++|.++...|+++.|+++|+..+.+.- .+........+.+|.
T Consensus 204 TyYlLGdf~~ai~~H~~RL~ia~efGDrAaeRRA~sNlgN~hiflg~fe~A~ehYK~tl~LAielg~r~vEAQscYSLgN 283 (639)
T KOG1130|consen 204 TYYLLGDFDQAIHFHKLRLEIAQEFGDRAAERRAHSNLGNCHIFLGNFELAIEHYKLTLNLAIELGNRTVEAQSCYSLGN 283 (639)
T ss_pred eeeeeccHHHHHHHHHHHHHHHHHhhhHHHHHHhhcccchhhhhhcccHhHHHHHHHHHHHHHHhcchhHHHHHHHHhhh
Confidence 66666777777666554444322211 123566777777777777777777776554321 111223345666777
Q ss_pred HHHhcCCHHHHHHHHHHhhcc-----CCchhHhHHHHHHHHHHHcCCcHHHHHHHHHHHhc----cCCC-CHHHHHHHHH
Q 003563 252 CYLRLGNMEKAEILFADLQWK-----NAIDHADLITEVADTLMSLGHSNSALKYYHFLETN----AGTD-NGYLYLKLAE 321 (810)
Q Consensus 252 ~~~~~g~~~~A~~~~~~~~~~-----~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~----~~~~-~~~~~~~la~ 321 (810)
.|.-..++++|+.++.+-+.. +......+++.+|.++...|..++|+.+.+..+.. .++. ...+..++..
T Consensus 284 tytll~e~~kAI~Yh~rHLaIAqeL~DriGe~RacwSLgna~~alg~h~kAl~fae~hl~~s~ev~D~sgelTar~Nlsd 363 (639)
T KOG1130|consen 284 TYTLLKEVQKAITYHQRHLAIAQELEDRIGELRACWSLGNAFNALGEHRKALYFAELHLRSSLEVNDTSGELTARDNLSD 363 (639)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHhCCcchhhhhhhhhHH
Confidence 777777777777777663321 11125667889999999999999999888766543 2222 3445666777
Q ss_pred HHHHccCHHH
Q 003563 322 CYLSLKERAH 331 (810)
Q Consensus 322 ~~~~~g~~~~ 331 (810)
.-..+|..+.
T Consensus 364 l~~~lG~~ds 373 (639)
T KOG1130|consen 364 LILELGQEDS 373 (639)
T ss_pred HHHHhCCCcc
Confidence 7777776544
No 107
>KOG4340 consensus Uncharacterized conserved protein [Function unknown]
Probab=99.42 E-value=1.4e-10 Score=108.11 Aligned_cols=368 Identities=12% Similarity=0.024 Sum_probs=235.1
Q ss_pred CHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCCCHHHHHHHHH
Q 003563 30 SPGVTKMLGEASLQYAYGNFEQAISLLKEVVRLSPNLPETYNTLGLAHSALGNHKSAFDFYVIAAHLSPKDSALWKQLLT 109 (810)
Q Consensus 30 ~~~~~~~l~~a~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~p~~~~~~~~la~ 109 (810)
|.....+-..|.+|+...+|..|..+|++.-...|......+..+..+++.+.+..|+...........-.......-+-
T Consensus 41 p~~rAgLSlLgyCYY~~Q~f~~AA~CYeQL~ql~P~~~qYrlY~AQSLY~A~i~ADALrV~~~~~D~~~L~~~~lqLqaA 120 (459)
T KOG4340|consen 41 PRSRAGLSLLGYCYYRLQEFALAAECYEQLGQLHPELEQYRLYQAQSLYKACIYADALRVAFLLLDNPALHSRVLQLQAA 120 (459)
T ss_pred ccchHHHHHHHHHHHHHHHHHHHHHHHHHHHhhChHHHHHHHHHHHHHHHhcccHHHHHHHHHhcCCHHHHHHHHHHHHH
Confidence 33445566679999999999999999999999999998888899999999999999999887765432112334445567
Q ss_pred HHHHcCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCChHHHH
Q 003563 110 FAVQKGDTAQAMYYIRQAIRAEPKDISLRIHLASFYVEIGDYEKAAESYEQIQKLFPDNVDATKTGAQLFLKCGQTARSI 189 (810)
Q Consensus 110 ~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~ 189 (810)
+.+..+++..+....++.-. .++.+...+.|.+.++.|+++.|++-|+.+++...-++-+-++++.++++.|+++.|+
T Consensus 121 IkYse~Dl~g~rsLveQlp~--en~Ad~~in~gCllykegqyEaAvqkFqaAlqvsGyqpllAYniALaHy~~~qyasAL 198 (459)
T KOG4340|consen 121 IKYSEGDLPGSRSLVEQLPS--ENEADGQINLGCLLYKEGQYEAAVQKFQAALQVSGYQPLLAYNLALAHYSSRQYASAL 198 (459)
T ss_pred HhcccccCcchHHHHHhccC--CCccchhccchheeeccccHHHHHHHHHHHHhhcCCCchhHHHHHHHHHhhhhHHHHH
Confidence 77788888888776665421 2567889999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHh----hCCCCC--------C---------------hHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhcCC--CC
Q 003563 190 GILEEYLK----VHPSDA--------D---------------LSVIDLLVAILMENNAYEKTLQHIEHAQIVRFSG--KE 240 (810)
Q Consensus 190 ~~~~~~l~----~~p~~~--------~---------------~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~--~~ 240 (810)
++...+++ ..|.-. + ..+++..+.++++.|+++.|.+.+... |+. ..
T Consensus 199 k~iSEIieRG~r~HPElgIGm~tegiDvrsvgNt~~lh~Sal~eAfNLKaAIeyq~~n~eAA~eaLtDm----PPRaE~e 274 (459)
T KOG4340|consen 199 KHISEIIERGIRQHPELGIGMTTEGIDVRSVGNTLVLHQSALVEAFNLKAAIEYQLRNYEAAQEALTDM----PPRAEEE 274 (459)
T ss_pred HHHHHHHHhhhhcCCccCccceeccCchhcccchHHHHHHHHHHHhhhhhhhhhhcccHHHHHHHhhcC----CCccccc
Confidence 88777665 456421 0 134555667777788888777665433 221 12
Q ss_pred CcHHHHHHHHHHHHhcCCHHHHHHHHHHhhccCCchhHhHHHHHHHHHHHcCCcHHHHHHHHHHHhccCC-CCHHHHHHH
Q 003563 241 LPLKLKVKAGICYLRLGNMEKAEILFADLQWKNAIDHADLITEVADTLMSLGHSNSALKYYHFLETNAGT-DNGYLYLKL 319 (810)
Q Consensus 241 ~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~-~~~~~~~~l 319 (810)
.++....+++..- ..+++.+...-+.-++..+| --++.+.++-.++.+..-|+-|.+++..-...... -++..+..+
T Consensus 275 lDPvTLHN~Al~n-~~~~p~~g~~KLqFLL~~nP-fP~ETFANlLllyCKNeyf~lAADvLAEn~~lTyk~L~~Yly~LL 352 (459)
T KOG4340|consen 275 LDPVTLHNQALMN-MDARPTEGFEKLQFLLQQNP-FPPETFANLLLLYCKNEYFDLAADVLAENAHLTYKFLTPYLYDLL 352 (459)
T ss_pred CCchhhhHHHHhc-ccCCccccHHHHHHHHhcCC-CChHHHHHHHHHHhhhHHHhHHHHHHhhCcchhHHHhhHHHHHHH
Confidence 2333444444432 23556666666666666666 35667777777888888888887776321111000 012222222
Q ss_pred HHHHHHccCHHHHHHHHHHHHhhcCCCHHHHHHHHHHHHHc-CC----HHHHHHhcCCCCCCCcccCCCCCCChhhhHHH
Q 003563 320 AECYLSLKERAHAIMFFYKALDRFEDNIDARLTLASLLLEE-AK----EEEAITLLSPPKDLDSLDMNSDKSNPWWLNEK 394 (810)
Q Consensus 320 a~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~-g~----~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~ 394 (810)
-.+-...-..++|.+-+.+.-..-.+. .+..-+.+.... .+ ...|++-|+++++.. ..
T Consensus 353 daLIt~qT~pEea~KKL~~La~~l~~k--LRklAi~vQe~r~~~dd~a~R~ai~~Yd~~LE~Y---------------LP 415 (459)
T KOG4340|consen 353 DALITCQTAPEEAFKKLDGLAGMLTEK--LRKLAIQVQEARHNRDDEAIRKAVNEYDETLEKY---------------LP 415 (459)
T ss_pred HHHHhCCCCHHHHHHHHHHHHHHHHHH--HHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHH---------------HH
Confidence 222222334555554444332211110 000011111111 11 112222332222221 24
Q ss_pred HHHHHHHHHHhcCCchhHHhhhhhhhhh
Q 003563 395 IIMKLCHIYRAKGMPEDFVDAIFPLVCE 422 (810)
Q Consensus 395 ~~~~la~~~~~~g~~~~A~~~~~~~l~~ 422 (810)
+.+..+++|+...++..+.+.|...++-
T Consensus 416 VlMa~AkiyW~~~Dy~~vEk~Fr~Svef 443 (459)
T KOG4340|consen 416 VLMAQAKIYWNLEDYPMVEKIFRKSVEF 443 (459)
T ss_pred HHHHHHHhhccccccHHHHHHHHHHHhh
Confidence 7788899999999888888777665543
No 108
>PRK04841 transcriptional regulator MalT; Provisional
Probab=99.41 E-value=4.3e-10 Score=134.89 Aligned_cols=344 Identities=12% Similarity=0.072 Sum_probs=250.6
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHH-HhCCCChHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCC---------CHHHHH
Q 003563 36 MLGEASLQYAYGNFEQAISLLKEVV-RLSPNLPETYNTLGLAHSALGNHKSAFDFYVIAAHLSPK---------DSALWK 105 (810)
Q Consensus 36 ~l~~a~~~~~~g~~~~A~~~~~~~l-~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~p~---------~~~~~~ 105 (810)
+...|......|++..+...+..+- .....++......+.++...|++++|...+..+....+. ......
T Consensus 377 l~~~a~~l~~~g~~~~l~~~l~~lp~~~~~~~~~l~~~~a~~~~~~g~~~~a~~~l~~a~~~~~~~~~~~~~~~~~~~~~ 456 (903)
T PRK04841 377 LLQHGWSLFNQGELSLLEECLNALPWEVLLENPRLVLLQAWLAQSQHRYSEVNTLLARAEQELKDRNIELDGTLQAEFNA 456 (903)
T ss_pred HHHhHHHHHhcCChHHHHHHHHhCCHHHHhcCcchHHHHHHHHHHCCCHHHHHHHHHHHHHhccccCcccchhHHHHHHH
Confidence 3455667777888887777765541 112234556677888889999999999999888654321 123345
Q ss_pred HHHHHHHHcCCHHHHHHHHHHHHHcCCCCH-----HHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC------HHHHHH
Q 003563 106 QLLTFAVQKGDTAQAMYYIRQAIRAEPKDI-----SLRIHLASFYVEIGDYEKAAESYEQIQKLFPDN------VDATKT 174 (810)
Q Consensus 106 ~la~~~~~~g~~~~A~~~~~~al~~~p~~~-----~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~------~~~~~~ 174 (810)
.++.++...|++++|...+++++...|... .+...+|.++...|++++|...+++++...... ..++..
T Consensus 457 ~~a~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~a~~~lg~~~~~~G~~~~A~~~~~~al~~~~~~g~~~~~~~~~~~ 536 (903)
T PRK04841 457 LRAQVAINDGDPEEAERLAELALAELPLTWYYSRIVATSVLGEVHHCKGELARALAMMQQTEQMARQHDVYHYALWSLLQ 536 (903)
T ss_pred HHHHHHHhCCCHHHHHHHHHHHHhcCCCccHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhhhcchHHHHHHHHH
Confidence 568888999999999999999998554432 345678899999999999999999998764321 245677
Q ss_pred HHHHHHHcCChHHHHHHHHHHHhhCCCC-----C-ChHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhcCCCC-CcHHHHH
Q 003563 175 GAQLFLKCGQTARSIGILEEYLKVHPSD-----A-DLSVIDLLVAILMENNAYEKTLQHIEHAQIVRFSGKE-LPLKLKV 247 (810)
Q Consensus 175 la~~~~~~g~~~~A~~~~~~~l~~~p~~-----~-~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~-~~~~~~~ 247 (810)
+|.++...|++++|...+++++...... . ....+..+|.++...|++++|...+.+++.......+ .....+.
T Consensus 537 la~~~~~~G~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~G~~~~A~~~~~~al~~~~~~~~~~~~~~~~ 616 (903)
T PRK04841 537 QSEILFAQGFLQAAYETQEKAFQLIEEQHLEQLPMHEFLLRIRAQLLWEWARLDEAEQCARKGLEVLSNYQPQQQLQCLA 616 (903)
T ss_pred HHHHHHHCCCHHHHHHHHHHHHHHHHHhccccccHHHHHHHHHHHHHHHhcCHHHHHHHHHHhHHhhhccCchHHHHHHH
Confidence 8999999999999999999988753221 1 1224557888999999999999999999876432221 2345566
Q ss_pred HHHHHHHhcCCHHHHHHHHHHhhccCCch--hHhHH----HHHHHHHHHcCCcHHHHHHHHHHHhccCCCCH----HHHH
Q 003563 248 KAGICYLRLGNMEKAEILFADLQWKNAID--HADLI----TEVADTLMSLGHSNSALKYYHFLETNAGTDNG----YLYL 317 (810)
Q Consensus 248 ~la~~~~~~g~~~~A~~~~~~~~~~~~~~--~~~~~----~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~----~~~~ 317 (810)
.++.++...|++++|...+.++....... ..... ......+...|+.+.|...+...... .+... ..+.
T Consensus 617 ~la~~~~~~G~~~~A~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~l~~~~~~-~~~~~~~~~~~~~ 695 (903)
T PRK04841 617 MLAKISLARGDLDNARRYLNRLENLLGNGRYHSDWIANADKVRLIYWQMTGDKEAAANWLRQAPKP-EFANNHFLQGQWR 695 (903)
T ss_pred HHHHHHHHcCCHHHHHHHHHHHHHHHhcccccHhHhhHHHHHHHHHHHHCCCHHHHHHHHHhcCCC-CCccchhHHHHHH
Confidence 78899999999999999998875432110 11111 11224455688999999998766542 21221 2256
Q ss_pred HHHHHHHHccCHHHHHHHHHHHHhhcC------CCHHHHHHHHHHHHHcCCHHHHHHhcCCCCCCCccc
Q 003563 318 KLAECYLSLKERAHAIMFFYKALDRFE------DNIDARLTLASLLLEEAKEEEAITLLSPPKDLDSLD 380 (810)
Q Consensus 318 ~la~~~~~~g~~~~A~~~~~~al~~~p------~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~ 380 (810)
.++.++...|++++|...+++++.... ....++..+|.++...|+.++|...+.++++.....
T Consensus 696 ~~a~~~~~~g~~~~A~~~l~~al~~~~~~g~~~~~a~~~~~la~a~~~~G~~~~A~~~L~~Al~la~~~ 764 (903)
T PRK04841 696 NIARAQILLGQFDEAEIILEELNENARSLRLMSDLNRNLILLNQLYWQQGRKSEAQRVLLEALKLANRT 764 (903)
T ss_pred HHHHHHHHcCCHHHHHHHHHHHHHHHHHhCchHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhCcc
Confidence 789999999999999999999988632 224577889999999999999999999999877543
No 109
>PRK15179 Vi polysaccharide biosynthesis protein TviE; Provisional
Probab=99.41 E-value=1.7e-11 Score=135.94 Aligned_cols=152 Identities=17% Similarity=0.121 Sum_probs=126.4
Q ss_pred HHHHHHHHHHhCCCChHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC
Q 003563 52 AISLLKEVVRLSPNLPETYNTLGLAHSALGNHKSAFDFYVIAAHLSPKDSALWKQLLTFAVQKGDTAQAMYYIRQAIRAE 131 (810)
Q Consensus 52 A~~~~~~~l~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~ 131 (810)
++.-+....+..|.+++++..||.+....|.+++|...++.++++.|++..++..++.++.+.+++++|+..+++++..+
T Consensus 71 ~~~~~~~~~~~~~~~~~~~~~La~i~~~~g~~~ea~~~l~~~~~~~Pd~~~a~~~~a~~L~~~~~~eeA~~~~~~~l~~~ 150 (694)
T PRK15179 71 ALPELLDYVRRYPHTELFQVLVARALEAAHRSDEGLAVWRGIHQRFPDSSEAFILMLRGVKRQQGIEAGRAEIELYFSGG 150 (694)
T ss_pred hHHHHHHHHHhccccHHHHHHHHHHHHHcCCcHHHHHHHHHHHhhCCCcHHHHHHHHHHHHHhccHHHHHHHHHHHhhcC
Confidence 33334444455778888888888888888888888888888888888888888888888888888888888888888888
Q ss_pred CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHhhCCCCC
Q 003563 132 PKDISLRIHLASFYVEIGDYEKAAESYEQIQKLFPDNVDATKTGAQLFLKCGQTARSIGILEEYLKVHPSDA 203 (810)
Q Consensus 132 p~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~ 203 (810)
|+++.+++.+|.++.+.|++++|+..|++++..+|+++.++..+|.++...|+.++|...|+++++...+..
T Consensus 151 p~~~~~~~~~a~~l~~~g~~~~A~~~y~~~~~~~p~~~~~~~~~a~~l~~~G~~~~A~~~~~~a~~~~~~~~ 222 (694)
T PRK15179 151 SSSAREILLEAKSWDEIGQSEQADACFERLSRQHPEFENGYVGWAQSLTRRGALWRARDVLQAGLDAIGDGA 222 (694)
T ss_pred CCCHHHHHHHHHHHHHhcchHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhCcch
Confidence 888888888888888888888888888888888888888888888888888888888888888888765443
No 110
>TIGR02552 LcrH_SycD type III secretion low calcium response chaperone LcrH/SycD. ScyD/LcrH contains three central tetratricopeptide-like repeats that are predicted to fold into an all-alpha-helical array.
Probab=99.41 E-value=7.2e-12 Score=111.68 Aligned_cols=117 Identities=19% Similarity=0.267 Sum_probs=86.8
Q ss_pred HHHHHHHHhCCCChHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCC
Q 003563 54 SLLKEVVRLSPNLPETYNTLGLAHSALGNHKSAFDFYVIAAHLSPKDSALWKQLLTFAVQKGDTAQAMYYIRQAIRAEPK 133 (810)
Q Consensus 54 ~~~~~~l~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~ 133 (810)
..+++++..+|++..+.+.+|.++...|++++|...+++++..+|.++.+|..+|.++...|++++|+.++++++..+|+
T Consensus 4 ~~~~~~l~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~p~ 83 (135)
T TIGR02552 4 ATLKDLLGLDSEQLEQIYALAYNLYQQGRYDEALKLFQLLAAYDPYNSRYWLGLAACCQMLKEYEEAIDAYALAAALDPD 83 (135)
T ss_pred hhHHHHHcCChhhHHHHHHHHHHHHHcccHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCC
Confidence 35667777777777777777777777777777777777777777777777777777777777777777777777777777
Q ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHH
Q 003563 134 DISLRIHLASFYVEIGDYEKAAESYEQIQKLFPDNVD 170 (810)
Q Consensus 134 ~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~ 170 (810)
++..++.+|.++...|++++|+..++++++.+|++..
T Consensus 84 ~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~ 120 (135)
T TIGR02552 84 DPRPYFHAAECLLALGEPESALKALDLAIEICGENPE 120 (135)
T ss_pred ChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhccccch
Confidence 7777777777777777777777777777777776654
No 111
>KOG3060 consensus Uncharacterized conserved protein [Function unknown]
Probab=99.40 E-value=1.5e-10 Score=105.79 Aligned_cols=166 Identities=17% Similarity=0.181 Sum_probs=124.8
Q ss_pred hHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHH
Q 003563 67 PETYNTLGLAHSALGNHKSAFDFYVIAAHLSPKDSALWKQLLTFAVQKGDTAQAMYYIRQAIRAEPKDISLRIHLASFYV 146 (810)
Q Consensus 67 ~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~ 146 (810)
...+-....+....|+.+-|..++.+.....|++..+-..-|..+...|++++|+++|+..++-+|.+...+...-.+..
T Consensus 52 w~l~EqV~IAAld~~~~~lAq~C~~~L~~~fp~S~RV~~lkam~lEa~~~~~~A~e~y~~lL~ddpt~~v~~KRKlAilk 131 (289)
T KOG3060|consen 52 WTLYEQVFIAALDTGRDDLAQKCINQLRDRFPGSKRVGKLKAMLLEATGNYKEAIEYYESLLEDDPTDTVIRKRKLAILK 131 (289)
T ss_pred HHHHHHHHHHHHHhcchHHHHHHHHHHHHhCCCChhHHHHHHHHHHHhhchhhHHHHHHHHhccCcchhHHHHHHHHHHH
Confidence 34444555566667777888888877777777777777777777778888888888888888888877777777777777
Q ss_pred HcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHhhCCCCCChHHHHHHHHHHHHcC---CHHH
Q 003563 147 EIGDYEKAAESYEQIQKLFPDNVDATKTGAQLFLKCGQTARSIGILEEYLKVHPSDADLSVIDLLVAILMENN---AYEK 223 (810)
Q Consensus 147 ~~g~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~~~la~~~~~~g---~~~~ 223 (810)
.+|+.-+|++.+...++.++.|.++|..++.+|...|++++|.-++++++-..|.++. .+..+|++++..| +..-
T Consensus 132 a~GK~l~aIk~ln~YL~~F~~D~EAW~eLaeiY~~~~~f~kA~fClEE~ll~~P~n~l--~f~rlae~~Yt~gg~eN~~~ 209 (289)
T KOG3060|consen 132 AQGKNLEAIKELNEYLDKFMNDQEAWHELAEIYLSEGDFEKAAFCLEELLLIQPFNPL--YFQRLAEVLYTQGGAENLEL 209 (289)
T ss_pred HcCCcHHHHHHHHHHHHHhcCcHHHHHHHHHHHHhHhHHHHHHHHHHHHHHcCCCcHH--HHHHHHHHHHHHhhHHHHHH
Confidence 7787778888888888888888888888888888888888888888888877777764 4556777776665 4556
Q ss_pred HHHHHHHHHHH
Q 003563 224 TLQHIEHAQIV 234 (810)
Q Consensus 224 A~~~~~~~~~~ 234 (810)
|.++|.+++++
T Consensus 210 arkyy~~alkl 220 (289)
T KOG3060|consen 210 ARKYYERALKL 220 (289)
T ss_pred HHHHHHHHHHh
Confidence 77777777777
No 112
>KOG3060 consensus Uncharacterized conserved protein [Function unknown]
Probab=99.40 E-value=9.6e-11 Score=107.12 Aligned_cols=176 Identities=20% Similarity=0.215 Sum_probs=159.7
Q ss_pred CCHHHHHHHHH-HHHHHHcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCCCHHHHHHH
Q 003563 29 LSPGVTKMLGE-ASLQYAYGNFEQAISLLKEVVRLSPNLPETYNTLGLAHSALGNHKSAFDFYVIAAHLSPKDSALWKQL 107 (810)
Q Consensus 29 ~~~~~~~~l~~-a~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~p~~~~~~~~l 107 (810)
+-++...++.+ ..+....|+.+-|..++++.....|++..+-...|..+...|++++|+++|+..++-+|.+...+...
T Consensus 47 ~g~e~w~l~EqV~IAAld~~~~~lAq~C~~~L~~~fp~S~RV~~lkam~lEa~~~~~~A~e~y~~lL~ddpt~~v~~KRK 126 (289)
T KOG3060|consen 47 LGDEIWTLYEQVFIAALDTGRDDLAQKCINQLRDRFPGSKRVGKLKAMLLEATGNYKEAIEYYESLLEDDPTDTVIRKRK 126 (289)
T ss_pred cCchHHHHHHHHHHHHHHhcchHHHHHHHHHHHHhCCCChhHHHHHHHHHHHhhchhhHHHHHHHHhccCcchhHHHHHH
Confidence 34455555543 45667889999999999999999999999999999999999999999999999999999999999988
Q ss_pred HHHHHHcCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCC---
Q 003563 108 LTFAVQKGDTAQAMYYIRQAIRAEPKDISLRIHLASFYVEIGDYEKAAESYEQIQKLFPDNVDATKTGAQLFLKCGQ--- 184 (810)
Q Consensus 108 a~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~--- 184 (810)
--+...+|+.-+|++.+...++..+.|.++|..++.+|...|+|++|.-++++++-..|.++-.+..+|.+++-.|.
T Consensus 127 lAilka~GK~l~aIk~ln~YL~~F~~D~EAW~eLaeiY~~~~~f~kA~fClEE~ll~~P~n~l~f~rlae~~Yt~gg~eN 206 (289)
T KOG3060|consen 127 LAILKAQGKNLEAIKELNEYLDKFMNDQEAWHELAEIYLSEGDFEKAAFCLEELLLIQPFNPLYFQRLAEVLYTQGGAEN 206 (289)
T ss_pred HHHHHHcCCcHHHHHHHHHHHHHhcCcHHHHHHHHHHHHhHhHHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHHhhHHH
Confidence 88899999999999999999999999999999999999999999999999999999999999999999999988774
Q ss_pred hHHHHHHHHHHHhhCCCCCC
Q 003563 185 TARSIGILEEYLKVHPSDAD 204 (810)
Q Consensus 185 ~~~A~~~~~~~l~~~p~~~~ 204 (810)
..-|.++|.++++++|.+..
T Consensus 207 ~~~arkyy~~alkl~~~~~r 226 (289)
T KOG3060|consen 207 LELARKYYERALKLNPKNLR 226 (289)
T ss_pred HHHHHHHHHHHHHhChHhHH
Confidence 56789999999999996543
No 113
>PRK15179 Vi polysaccharide biosynthesis protein TviE; Provisional
Probab=99.38 E-value=7.5e-11 Score=130.79 Aligned_cols=149 Identities=10% Similarity=-0.047 Sum_probs=138.2
Q ss_pred HHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC
Q 003563 86 AFDFYVIAAHLSPKDSALWKQLLTFAVQKGDTAQAMYYIRQAIRAEPKDISLRIHLASFYVEIGDYEKAAESYEQIQKLF 165 (810)
Q Consensus 86 A~~~~~~a~~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~ 165 (810)
++.-........|.+++++..||.+..+.|.+++|...++.+++..|++..++..++.++.+.+++++|+..+++++...
T Consensus 71 ~~~~~~~~~~~~~~~~~~~~~La~i~~~~g~~~ea~~~l~~~~~~~Pd~~~a~~~~a~~L~~~~~~eeA~~~~~~~l~~~ 150 (694)
T PRK15179 71 ALPELLDYVRRYPHTELFQVLVARALEAAHRSDEGLAVWRGIHQRFPDSSEAFILMLRGVKRQQGIEAGRAEIELYFSGG 150 (694)
T ss_pred hHHHHHHHHHhccccHHHHHHHHHHHHHcCCcHHHHHHHHHHHhhCCCcHHHHHHHHHHHHHhccHHHHHHHHHHHhhcC
Confidence 33333344455788999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCHHHHHHHHHHHHHcCChHHHHHHHHHHHhhCCCCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhc
Q 003563 166 PDNVDATKTGAQLFLKCGQTARSIGILEEYLKVHPSDADLSVIDLLVAILMENNAYEKTLQHIEHAQIVRF 236 (810)
Q Consensus 166 p~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~ 236 (810)
|++..++..+|.++...|++++|+..|++++..+|++.. ++..+|.++...|+.++|...|+++++..+
T Consensus 151 p~~~~~~~~~a~~l~~~g~~~~A~~~y~~~~~~~p~~~~--~~~~~a~~l~~~G~~~~A~~~~~~a~~~~~ 219 (694)
T PRK15179 151 SSSAREILLEAKSWDEIGQSEQADACFERLSRQHPEFEN--GYVGWAQSLTRRGALWRARDVLQAGLDAIG 219 (694)
T ss_pred CCCHHHHHHHHHHHHHhcchHHHHHHHHHHHhcCCCcHH--HHHHHHHHHHHcCCHHHHHHHHHHHHHhhC
Confidence 999999999999999999999999999999998887765 889999999999999999999999999854
No 114
>KOG0553 consensus TPR repeat-containing protein [General function prediction only]
Probab=99.38 E-value=7.9e-12 Score=117.84 Aligned_cols=120 Identities=18% Similarity=0.214 Sum_probs=95.2
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCCCHHHHHHHHHHHH
Q 003563 33 VTKMLGEASLQYAYGNFEQAISLLKEVVRLSPNLPETYNTLGLAHSALGNHKSAFDFYVIAAHLSPKDSALWKQLLTFAV 112 (810)
Q Consensus 33 ~~~~l~~a~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~p~~~~~~~~la~~~~ 112 (810)
+..+-.+|+.+++.++|.+|+..|.++|.++|.++..|...+.+|.++|.++.|++.++.++.++|....+|.+||.+|.
T Consensus 81 AE~LK~eGN~~m~~~~Y~eAv~kY~~AI~l~P~nAVyycNRAAAy~~Lg~~~~AVkDce~Al~iDp~yskay~RLG~A~~ 160 (304)
T KOG0553|consen 81 AESLKNEGNKLMKNKDYQEAVDKYTEAIELDPTNAVYYCNRAAAYSKLGEYEDAVKDCESALSIDPHYSKAYGRLGLAYL 160 (304)
T ss_pred HHHHHHHHHHHHHhhhHHHHHHHHHHHHhcCCCcchHHHHHHHHHHHhcchHHHHHHHHHHHhcChHHHHHHHHHHHHHH
Confidence 44555678888888888888888888888888888888888888888888888888888888888888888888888888
Q ss_pred HcCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHcCCHH
Q 003563 113 QKGDTAQAMYYIRQAIRAEPKDISLRIHLASFYVEIGDYE 152 (810)
Q Consensus 113 ~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~ 152 (810)
.+|++++|+..|+++++++|++......|..+-..+++..
T Consensus 161 ~~gk~~~A~~aykKaLeldP~Ne~~K~nL~~Ae~~l~e~~ 200 (304)
T KOG0553|consen 161 ALGKYEEAIEAYKKALELDPDNESYKSNLKIAEQKLNEPK 200 (304)
T ss_pred ccCcHHHHHHHHHhhhccCCCcHHHHHHHHHHHHHhcCCC
Confidence 8888888888888888888888877666666655555544
No 115
>TIGR02552 LcrH_SycD type III secretion low calcium response chaperone LcrH/SycD. ScyD/LcrH contains three central tetratricopeptide-like repeats that are predicted to fold into an all-alpha-helical array.
Probab=99.37 E-value=2.7e-11 Score=107.98 Aligned_cols=117 Identities=16% Similarity=0.189 Sum_probs=110.0
Q ss_pred HHHHHHHhcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC
Q 003563 88 DFYVIAAHLSPKDSALWKQLLTFAVQKGDTAQAMYYIRQAIRAEPKDISLRIHLASFYVEIGDYEKAAESYEQIQKLFPD 167 (810)
Q Consensus 88 ~~~~~a~~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~ 167 (810)
..+++++..+|++......+|..+...|++++|...+++++..+|.++.++..+|.++...|++++|+..+++++..+|+
T Consensus 4 ~~~~~~l~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~p~ 83 (135)
T TIGR02552 4 ATLKDLLGLDSEQLEQIYALAYNLYQQGRYDEALKLFQLLAAYDPYNSRYWLGLAACCQMLKEYEEAIDAYALAAALDPD 83 (135)
T ss_pred hhHHHHHcCChhhHHHHHHHHHHHHHcccHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCC
Confidence 46788999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CHHHHHHHHHHHHHcCChHHHHHHHHHHHhhCCCCCC
Q 003563 168 NVDATKTGAQLFLKCGQTARSIGILEEYLKVHPSDAD 204 (810)
Q Consensus 168 ~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~ 204 (810)
++..+..+|.++...|++++|+..++++++.+|++..
T Consensus 84 ~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~ 120 (135)
T TIGR02552 84 DPRPYFHAAECLLALGEPESALKALDLAIEICGENPE 120 (135)
T ss_pred ChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhccccch
Confidence 9999999999999999999999999999999998875
No 116
>PRK10866 outer membrane biogenesis protein BamD; Provisional
Probab=99.36 E-value=2.7e-10 Score=110.78 Aligned_cols=201 Identities=13% Similarity=0.069 Sum_probs=142.2
Q ss_pred HHHHhhhccccccCCCCCCCCCCCHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHH---HHHHHHHHHHcCCh
Q 003563 7 MLILQFSQLNKKRGRRKGSKNKLSPGVTKMLGEASLQYAYGNFEQAISLLKEVVRLSPNLPET---YNTLGLAHSALGNH 83 (810)
Q Consensus 7 ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~a~~~~~~g~~~~A~~~~~~~l~~~p~~~~~---~~~l~~~~~~~g~~ 83 (810)
+++++.+|..... ...+......+..|...+..|+|++|+..|++++...|..+.+ .+.+|.++++.+++
T Consensus 13 ~~~~lsgCs~~~~-------~~~~~~~~~~Y~~A~~~~~~g~y~~Ai~~f~~l~~~yP~s~~a~~a~l~la~ayy~~~~y 85 (243)
T PRK10866 13 LSLFLAGCSGSKE-------EVPDNPPSEIYATAQQKLQDGNWKQAITQLEALDNRYPFGPYSQQVQLDLIYAYYKNADL 85 (243)
T ss_pred HHHHHhhcCCCCc-------CCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHhcCCH
Confidence 4456677864221 1122456678899999999999999999999999999987655 48999999999999
Q ss_pred HHHHHHHHHHHhcCCCCH---HHHHHHHHHHHHcCC------------------HHHHHHHHHHHHHcCCCCHHHHHHHH
Q 003563 84 KSAFDFYVIAAHLSPKDS---ALWKQLLTFAVQKGD------------------TAQAMYYIRQAIRAEPKDISLRIHLA 142 (810)
Q Consensus 84 ~~A~~~~~~a~~~~p~~~---~~~~~la~~~~~~g~------------------~~~A~~~~~~al~~~p~~~~~~~~la 142 (810)
++|+..+++.++..|+++ .+++.+|.++...+. ..+|+..|++.++..|+..-+
T Consensus 86 ~~A~~~~e~fi~~~P~~~~~~~a~Y~~g~~~~~~~~~~~~~~~~~~~~~rD~~~~~~A~~~~~~li~~yP~S~ya----- 160 (243)
T PRK10866 86 PLAQAAIDRFIRLNPTHPNIDYVLYMRGLTNMALDDSALQGFFGVDRSDRDPQHARAAFRDFSKLVRGYPNSQYT----- 160 (243)
T ss_pred HHHHHHHHHHHHhCcCCCchHHHHHHHHHhhhhcchhhhhhccCCCccccCHHHHHHHHHHHHHHHHHCcCChhH-----
Confidence 999999999999998764 567888877644431 245777788888887766432
Q ss_pred HHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHhhCCCCCCh-HHHHHHHHHHHHcCCH
Q 003563 143 SFYVEIGDYEKAAESYEQIQKLFPDNVDATKTGAQLFLKCGQTARSIGILEEYLKVHPSDADL-SVIDLLVAILMENNAY 221 (810)
Q Consensus 143 ~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~-~~~~~la~~~~~~g~~ 221 (810)
.+|...+..+-. .-..--..+|..|.+.|.+..|+.-++.+++..|+.+.. .++..++..|...|..
T Consensus 161 ---------~~A~~rl~~l~~---~la~~e~~ia~~Y~~~~~y~AA~~r~~~v~~~Yp~t~~~~eal~~l~~ay~~lg~~ 228 (243)
T PRK10866 161 ---------TDATKRLVFLKD---RLAKYELSVAEYYTKRGAYVAVVNRVEQMLRDYPDTQATRDALPLMENAYRQLQLN 228 (243)
T ss_pred ---------HHHHHHHHHHHH---HHHHHHHHHHHHHHHcCchHHHHHHHHHHHHHCCCCchHHHHHHHHHHHHHHcCCh
Confidence 111111111100 001122356778888888888888888888888776543 5677788888888888
Q ss_pred HHHHHHHHHH
Q 003563 222 EKTLQHIEHA 231 (810)
Q Consensus 222 ~~A~~~~~~~ 231 (810)
++|..+....
T Consensus 229 ~~a~~~~~~l 238 (243)
T PRK10866 229 AQADKVAKII 238 (243)
T ss_pred HHHHHHHHHH
Confidence 8887766543
No 117
>KOG1128 consensus Uncharacterized conserved protein, contains TPR repeats [General function prediction only]
Probab=99.34 E-value=4.2e-11 Score=125.26 Aligned_cols=223 Identities=14% Similarity=0.115 Sum_probs=159.0
Q ss_pred CCCHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCCCHHHHHHH
Q 003563 28 KLSPGVTKMLGEASLQYAYGNFEQAISLLKEVVRLSPNLPETYNTLGLAHSALGNHKSAFDFYVIAAHLSPKDSALWKQL 107 (810)
Q Consensus 28 ~~~~~~~~~l~~a~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~p~~~~~~~~l 107 (810)
.+||-...-...|..+...|-...|+.+|++. ..|-....||...|+..+|..+..+-++ .|.++..|..+
T Consensus 393 ~lpp~Wq~q~~laell~slGitksAl~I~Erl--------emw~~vi~CY~~lg~~~kaeei~~q~le-k~~d~~lyc~L 463 (777)
T KOG1128|consen 393 HLPPIWQLQRLLAELLLSLGITKSALVIFERL--------EMWDPVILCYLLLGQHGKAEEINRQELE-KDPDPRLYCLL 463 (777)
T ss_pred CCCCcchHHHHHHHHHHHcchHHHHHHHHHhH--------HHHHHHHHHHHHhcccchHHHHHHHHhc-CCCcchhHHHh
Confidence 34555555555677777777777777777764 5566677777777777777777777776 56667777777
Q ss_pred HHHHHHcCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCChHH
Q 003563 108 LTFAVQKGDTAQAMYYIRQAIRAEPKDISLRIHLASFYVEIGDYEKAAESYEQIQKLFPDNVDATKTGAQLFLKCGQTAR 187 (810)
Q Consensus 108 a~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~ 187 (810)
|++.....-|++|.++.+.. +..+...+|......++++++.+.++..++++|-....|+.+|.+..+.++++.
T Consensus 464 GDv~~d~s~yEkawElsn~~------sarA~r~~~~~~~~~~~fs~~~~hle~sl~~nplq~~~wf~~G~~ALqlek~q~ 537 (777)
T KOG1128|consen 464 GDVLHDPSLYEKAWELSNYI------SARAQRSLALLILSNKDFSEADKHLERSLEINPLQLGTWFGLGCAALQLEKEQA 537 (777)
T ss_pred hhhccChHHHHHHHHHhhhh------hHHHHHhhccccccchhHHHHHHHHHHHhhcCccchhHHHhccHHHHHHhhhHH
Confidence 77666655555555554433 233556666666667778888888888888877777778888888888888888
Q ss_pred HHHHHHHHHhhCCCCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhcCCCCCcHHHHHHHHHHHHhcCCHHHHHHHHH
Q 003563 188 SIGILEEYLKVHPSDADLSVIDLLVAILMENNAYEKTLQHIEHAQIVRFSGKELPLKLKVKAGICYLRLGNMEKAEILFA 267 (810)
Q Consensus 188 A~~~~~~~l~~~p~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~ 267 (810)
|.+.|..++..+|++.. +|++++..|...++-.+|...++++++. +..++.++-+...+....|.+++|+..+.
T Consensus 538 av~aF~rcvtL~Pd~~e--aWnNls~ayi~~~~k~ra~~~l~EAlKc----n~~~w~iWENymlvsvdvge~eda~~A~~ 611 (777)
T KOG1128|consen 538 AVKAFHRCVTLEPDNAE--AWNNLSTAYIRLKKKKRAFRKLKEALKC----NYQHWQIWENYMLVSVDVGEFEDAIKAYH 611 (777)
T ss_pred HHHHHHHHhhcCCCchh--hhhhhhHHHHHHhhhHHHHHHHHHHhhc----CCCCCeeeechhhhhhhcccHHHHHHHHH
Confidence 88888888777777776 6778888888888777787777777776 45566666677777777777777777777
Q ss_pred Hhhc
Q 003563 268 DLQW 271 (810)
Q Consensus 268 ~~~~ 271 (810)
+++.
T Consensus 612 rll~ 615 (777)
T KOG1128|consen 612 RLLD 615 (777)
T ss_pred HHHH
Confidence 7643
No 118
>PRK15363 pathogenicity island 2 chaperone protein SscA; Provisional
Probab=99.32 E-value=5.7e-11 Score=102.82 Aligned_cols=106 Identities=9% Similarity=0.078 Sum_probs=81.4
Q ss_pred HhC-CCChHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHHHHH
Q 003563 61 RLS-PNLPETYNTLGLAHSALGNHKSAFDFYVIAAHLSPKDSALWKQLLTFAVQKGDTAQAMYYIRQAIRAEPKDISLRI 139 (810)
Q Consensus 61 ~~~-p~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~ 139 (810)
... ++.-+..+.+|..++..|++++|...|+.+...+|.+...|+.||.++..+|++++|+.+|.+++.++|+++.+++
T Consensus 28 ~~~~~~~l~~lY~~A~~ly~~G~l~~A~~~f~~L~~~Dp~~~~y~~gLG~~~Q~~g~~~~AI~aY~~A~~L~~ddp~~~~ 107 (157)
T PRK15363 28 DDDVTQPLNTLYRYAMQLMEVKEFAGAARLFQLLTIYDAWSFDYWFRLGECCQAQKHWGEAIYAYGRAAQIKIDAPQAPW 107 (157)
T ss_pred CCChHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCCCchHHH
Confidence 345 5566777777777777777777777777777777777777777777777777777777777777777777777777
Q ss_pred HHHHHHHHcCCHHHHHHHHHHHHHhCC
Q 003563 140 HLASFYVEIGDYEKAAESYEQIQKLFP 166 (810)
Q Consensus 140 ~la~~~~~~g~~~~A~~~~~~~l~~~p 166 (810)
+.|.+++..|+.+.|.+.|+.++....
T Consensus 108 ~ag~c~L~lG~~~~A~~aF~~Ai~~~~ 134 (157)
T PRK15363 108 AAAECYLACDNVCYAIKALKAVVRICG 134 (157)
T ss_pred HHHHHHHHcCCHHHHHHHHHHHHHHhc
Confidence 777777777777777777777777653
No 119
>PRK15363 pathogenicity island 2 chaperone protein SscA; Provisional
Probab=99.32 E-value=7.4e-11 Score=102.10 Aligned_cols=113 Identities=11% Similarity=0.091 Sum_probs=103.6
Q ss_pred HHhcC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHH
Q 003563 93 AAHLS-PKDSALWKQLLTFAVQKGDTAQAMYYIRQAIRAEPKDISLRIHLASFYVEIGDYEKAAESYEQIQKLFPDNVDA 171 (810)
Q Consensus 93 a~~~~-p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~ 171 (810)
...+. ++.-+..+.+|..++..|++++|...|+-+...+|.+...|+.||.++..+|++++|+..|.+++.++|+++..
T Consensus 26 l~~~~~~~~l~~lY~~A~~ly~~G~l~~A~~~f~~L~~~Dp~~~~y~~gLG~~~Q~~g~~~~AI~aY~~A~~L~~ddp~~ 105 (157)
T PRK15363 26 LLDDDVTQPLNTLYRYAMQLMEVKEFAGAARLFQLLTIYDAWSFDYWFRLGECCQAQKHWGEAIYAYGRAAQIKIDAPQA 105 (157)
T ss_pred HHCCChHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCCCchH
Confidence 34566 77788899999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHcCChHHHHHHHHHHHhhCCCCCCh
Q 003563 172 TKTGAQLFLKCGQTARSIGILEEYLKVHPSDADL 205 (810)
Q Consensus 172 ~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~ 205 (810)
+.++|.+++..|+.+.|.+.|+.++......+..
T Consensus 106 ~~~ag~c~L~lG~~~~A~~aF~~Ai~~~~~~~~~ 139 (157)
T PRK15363 106 PWAAAECYLACDNVCYAIKALKAVVRICGEVSEH 139 (157)
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHHhccChhH
Confidence 9999999999999999999999999987555543
No 120
>COG4783 Putative Zn-dependent protease, contains TPR repeats [General function prediction only]
Probab=99.30 E-value=8.2e-10 Score=111.16 Aligned_cols=153 Identities=12% Similarity=0.090 Sum_probs=118.6
Q ss_pred CCChHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHHHHHHHHH
Q 003563 64 PNLPETYNTLGLAHSALGNHKSAFDFYVIAAHLSPKDSALWKQLLTFAVQKGDTAQAMYYIRQAIRAEPKDISLRIHLAS 143 (810)
Q Consensus 64 p~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~ 143 (810)
|....+++..+..++..|++++|+..+...+...|+|+..+...+.++...|+.++|.+.+++++..+|+.+...+.+|.
T Consensus 303 ~~~~aa~YG~A~~~~~~~~~d~A~~~l~~L~~~~P~N~~~~~~~~~i~~~~nk~~~A~e~~~kal~l~P~~~~l~~~~a~ 382 (484)
T COG4783 303 RGGLAAQYGRALQTYLAGQYDEALKLLQPLIAAQPDNPYYLELAGDILLEANKAKEAIERLKKALALDPNSPLLQLNLAQ 382 (484)
T ss_pred ccchHHHHHHHHHHHHhcccchHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCCccHHHHHHHH
Confidence 66677788888888888888888888888777788888888888888888888888888888888888877777788888
Q ss_pred HHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHhhCCCCCChHHHHHHHHHHHHcCCHHH
Q 003563 144 FYVEIGDYEKAAESYEQIQKLFPDNVDATKTGAQLFLKCGQTARSIGILEEYLKVHPSDADLSVIDLLVAILMENNAYEK 223 (810)
Q Consensus 144 ~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~~~la~~~~~~g~~~~ 223 (810)
.+.+.|++.+|+..++..+..+|+++..|..+|+.|..+|+..+|.. ..++.+...|++++
T Consensus 383 all~~g~~~eai~~L~~~~~~~p~dp~~w~~LAqay~~~g~~~~a~~-------------------A~AE~~~~~G~~~~ 443 (484)
T COG4783 383 ALLKGGKPQEAIRILNRYLFNDPEDPNGWDLLAQAYAELGNRAEALL-------------------ARAEGYALAGRLEQ 443 (484)
T ss_pred HHHhcCChHHHHHHHHHHhhcCCCCchHHHHHHHHHHHhCchHHHHH-------------------HHHHHHHhCCCHHH
Confidence 88888888888888888888888888888888888877777665432 45556666777777
Q ss_pred HHHHHHHHHHHh
Q 003563 224 TLQHIEHAQIVR 235 (810)
Q Consensus 224 A~~~~~~~~~~~ 235 (810)
|+..+..+.+..
T Consensus 444 A~~~l~~A~~~~ 455 (484)
T COG4783 444 AIIFLMRASQQV 455 (484)
T ss_pred HHHHHHHHHHhc
Confidence 877777777663
No 121
>KOG1128 consensus Uncharacterized conserved protein, contains TPR repeats [General function prediction only]
Probab=99.29 E-value=1.1e-09 Score=114.96 Aligned_cols=294 Identities=18% Similarity=0.139 Sum_probs=228.2
Q ss_pred CCChHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHHHHHHHHH
Q 003563 64 PNLPETYNTLGLAHSALGNHKSAFDFYVIAAHLSPKDSALWKQLLTFAVQKGDTAQAMYYIRQAIRAEPKDISLRIHLAS 143 (810)
Q Consensus 64 p~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~ 143 (810)
|..+.....++..+...|-...|+..|++ ...|-....||...|+..+|.....+-++ .|.++..|..+|+
T Consensus 395 pp~Wq~q~~laell~slGitksAl~I~Er--------lemw~~vi~CY~~lg~~~kaeei~~q~le-k~~d~~lyc~LGD 465 (777)
T KOG1128|consen 395 PPIWQLQRLLAELLLSLGITKSALVIFER--------LEMWDPVILCYLLLGQHGKAEEINRQELE-KDPDPRLYCLLGD 465 (777)
T ss_pred CCcchHHHHHHHHHHHcchHHHHHHHHHh--------HHHHHHHHHHHHHhcccchHHHHHHHHhc-CCCcchhHHHhhh
Confidence 44556678899999999999999999987 46788999999999999999999999998 6778888888888
Q ss_pred HHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHhhCCCCCChHHHHHHHHHHHHcCCHHH
Q 003563 144 FYVEIGDYEKAAESYEQIQKLFPDNVDATKTGAQLFLKCGQTARSIGILEEYLKVHPSDADLSVIDLLVAILMENNAYEK 223 (810)
Q Consensus 144 ~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~~~la~~~~~~g~~~~ 223 (810)
+....--|++|.++.+.. +..+...+|......++++++...++..++++|-... .|+.+|.+..+.++++.
T Consensus 466 v~~d~s~yEkawElsn~~------sarA~r~~~~~~~~~~~fs~~~~hle~sl~~nplq~~--~wf~~G~~ALqlek~q~ 537 (777)
T KOG1128|consen 466 VLHDPSLYEKAWELSNYI------SARAQRSLALLILSNKDFSEADKHLERSLEINPLQLG--TWFGLGCAALQLEKEQA 537 (777)
T ss_pred hccChHHHHHHHHHhhhh------hHHHHHhhccccccchhHHHHHHHHHHHhhcCccchh--HHHhccHHHHHHhhhHH
Confidence 887777777777776654 3446677777778899999999999999999998877 89999999999999999
Q ss_pred HHHHHHHHHHHhcCCCCCcHHHHHHHHHHHHhcCCHHHHHHHHHHhhccCCchhHhHHHHHHHHHHHcCCcHHHHHHHHH
Q 003563 224 TLQHIEHAQIVRFSGKELPLKLKVKAGICYLRLGNMEKAEILFADLQWKNAIDHADLITEVADTLMSLGHSNSALKYYHF 303 (810)
Q Consensus 224 A~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~ 303 (810)
|.+.|..++.. .|....++.+++.+|...|+-.+|...++++++-+. .+..+|.+.-.+..+.|.+++|+..+.+
T Consensus 538 av~aF~rcvtL----~Pd~~eaWnNls~ayi~~~~k~ra~~~l~EAlKcn~-~~w~iWENymlvsvdvge~eda~~A~~r 612 (777)
T KOG1128|consen 538 AVKAFHRCVTL----EPDNAEAWNNLSTAYIRLKKKKRAFRKLKEALKCNY-QHWQIWENYMLVSVDVGEFEDAIKAYHR 612 (777)
T ss_pred HHHHHHHHhhc----CCCchhhhhhhhHHHHHHhhhHHHHHHHHHHhhcCC-CCCeeeechhhhhhhcccHHHHHHHHHH
Confidence 99999999999 889999999999999999999999999999998774 5888999999999999999999999999
Q ss_pred HHhccC-CCCHHHHHHHHHHHHHc-----cCHHHHHHHHH-----HHHhhcCCCHHHHHHHHHHHH-----HcCCHHHHH
Q 003563 304 LETNAG-TDNGYLYLKLAECYLSL-----KERAHAIMFFY-----KALDRFEDNIDARLTLASLLL-----EEAKEEEAI 367 (810)
Q Consensus 304 ~~~~~~-~~~~~~~~~la~~~~~~-----g~~~~A~~~~~-----~al~~~p~~~~~~~~la~~~~-----~~g~~~~A~ 367 (810)
.+.... ..++.....+....... ++-..+..... +.+..--+.+..|...|..+. +.+..++|.
T Consensus 613 ll~~~~~~~d~~vl~~iv~~~~~~~~d~s~de~~~~k~~~kelmg~~~~qv~~s~~~wrL~a~l~~~~~~ek~~~~eka~ 692 (777)
T KOG1128|consen 613 LLDLRKKYKDDEVLLIIVRTVLEGMTDESGDEATGLKGKLKELLGKVLSQVTNSPETWRLYALLYGNGSSEKLDENEKAY 692 (777)
T ss_pred HHHhhhhcccchhhHHHHHHHHhhccccccchhhhhhHHHHHHHHHHHHHHhCchhhhHhHhhhccccchhcccccHHHH
Confidence 876522 22444444433332221 23223332222 233333345666665554321 234556666
Q ss_pred HhcCCCCCCCcc
Q 003563 368 TLLSPPKDLDSL 379 (810)
Q Consensus 368 ~~~~~a~~~~~~ 379 (810)
+..++....+..
T Consensus 693 ~~l~k~~~~~s~ 704 (777)
T KOG1128|consen 693 RALSKAYKCDTG 704 (777)
T ss_pred hhhhhCcccccc
Confidence 666665555443
No 122
>KOG0553 consensus TPR repeat-containing protein [General function prediction only]
Probab=99.25 E-value=8.5e-11 Score=110.96 Aligned_cols=116 Identities=21% Similarity=0.223 Sum_probs=69.2
Q ss_pred HHHHHHHHHHcCChHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHcC
Q 003563 70 YNTLGLAHSALGNHKSAFDFYVIAAHLSPKDSALWKQLLTFAVQKGDTAQAMYYIRQAIRAEPKDISLRIHLASFYVEIG 149 (810)
Q Consensus 70 ~~~l~~~~~~~g~~~~A~~~~~~a~~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g 149 (810)
+-.-|.-..+.++|.+|+..|.+|++++|.++..|.+.|.+|.++|.++.|++..+.++.++|....+|..+|.+|..+|
T Consensus 84 LK~eGN~~m~~~~Y~eAv~kY~~AI~l~P~nAVyycNRAAAy~~Lg~~~~AVkDce~Al~iDp~yskay~RLG~A~~~~g 163 (304)
T KOG0553|consen 84 LKNEGNKLMKNKDYQEAVDKYTEAIELDPTNAVYYCNRAAAYSKLGEYEDAVKDCESALSIDPHYSKAYGRLGLAYLALG 163 (304)
T ss_pred HHHHHHHHHHhhhHHHHHHHHHHHHhcCCCcchHHHHHHHHHHHhcchHHHHHHHHHHHhcChHHHHHHHHHHHHHHccC
Confidence 34445555555666666666666666666666666666666666666666666666666666666666666666666666
Q ss_pred CHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCh
Q 003563 150 DYEKAAESYEQIQKLFPDNVDATKTGAQLFLKCGQT 185 (810)
Q Consensus 150 ~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~ 185 (810)
++++|++.|++++.++|++......|..+-...+..
T Consensus 164 k~~~A~~aykKaLeldP~Ne~~K~nL~~Ae~~l~e~ 199 (304)
T KOG0553|consen 164 KYEEAIEAYKKALELDPDNESYKSNLKIAEQKLNEP 199 (304)
T ss_pred cHHHHHHHHHhhhccCCCcHHHHHHHHHHHHHhcCC
Confidence 666666666666666666655555554444444333
No 123
>COG4783 Putative Zn-dependent protease, contains TPR repeats [General function prediction only]
Probab=99.23 E-value=4e-09 Score=106.32 Aligned_cols=153 Identities=22% Similarity=0.196 Sum_probs=133.1
Q ss_pred CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHH
Q 003563 98 PKDSALWKQLLTFAVQKGDTAQAMYYIRQAIRAEPKDISLRIHLASFYVEIGDYEKAAESYEQIQKLFPDNVDATKTGAQ 177 (810)
Q Consensus 98 p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~la~ 177 (810)
|....+++..+..++..|++++|+..++..+...|+|+..+...+.++...|+.++|.+.+++++.++|+.+..+.++|.
T Consensus 303 ~~~~aa~YG~A~~~~~~~~~d~A~~~l~~L~~~~P~N~~~~~~~~~i~~~~nk~~~A~e~~~kal~l~P~~~~l~~~~a~ 382 (484)
T COG4783 303 RGGLAAQYGRALQTYLAGQYDEALKLLQPLIAAQPDNPYYLELAGDILLEANKAKEAIERLKKALALDPNSPLLQLNLAQ 382 (484)
T ss_pred ccchHHHHHHHHHHHHhcccchHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCCccHHHHHHHH
Confidence 67788899999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHcCChHHHHHHHHHHHhhCCCCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhcCCCCCcHHHHHHHHHHHHhcC
Q 003563 178 LFLKCGQTARSIGILEEYLKVHPSDADLSVIDLLVAILMENNAYEKTLQHIEHAQIVRFSGKELPLKLKVKAGICYLRLG 257 (810)
Q Consensus 178 ~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g 257 (810)
.+.+.|++.+|+..++..+..+|+++. .|..|+..|..+|+..+|.....+ .+...|
T Consensus 383 all~~g~~~eai~~L~~~~~~~p~dp~--~w~~LAqay~~~g~~~~a~~A~AE---------------------~~~~~G 439 (484)
T COG4783 383 ALLKGGKPQEAIRILNRYLFNDPEDPN--GWDLLAQAYAELGNRAEALLARAE---------------------GYALAG 439 (484)
T ss_pred HHHhcCChHHHHHHHHHHhhcCCCCch--HHHHHHHHHHHhCchHHHHHHHHH---------------------HHHhCC
Confidence 999999999999999999999999887 788999999999888777665443 355568
Q ss_pred CHHHHHHHHHHhhccC
Q 003563 258 NMEKAEILFADLQWKN 273 (810)
Q Consensus 258 ~~~~A~~~~~~~~~~~ 273 (810)
++++|+..+..+.+..
T Consensus 440 ~~~~A~~~l~~A~~~~ 455 (484)
T COG4783 440 RLEQAIIFLMRASQQV 455 (484)
T ss_pred CHHHHHHHHHHHHHhc
Confidence 8888888888775544
No 124
>PF04733 Coatomer_E: Coatomer epsilon subunit; InterPro: IPR006822 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the epsilon subunit of the coatomer complex, which is involved in the regulation of intracellular protein trafficking between the endoplasmic reticulum and the Golgi complex []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006890 retrograde vesicle-mediated transport, Golgi to ER, 0030126 COPI vesicle coat; PDB: 3MV2_B 3MV3_F 3MKR_A.
Probab=99.23 E-value=8.2e-11 Score=117.25 Aligned_cols=255 Identities=19% Similarity=0.173 Sum_probs=159.3
Q ss_pred HHHcCCHHHHHHHHHHHHHcCC-CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCChHHHH
Q 003563 111 AVQKGDTAQAMYYIRQAIRAEP-KDISLRIHLASFYVEIGDYEKAAESYEQIQKLFPDNVDATKTGAQLFLKCGQTARSI 189 (810)
Q Consensus 111 ~~~~g~~~~A~~~~~~al~~~p-~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~ 189 (810)
++-.|+|..++.-++ ....+| ........+.+++..+|+++..+..... ..+....+...++..+...++.+.++
T Consensus 11 ~fy~G~Y~~~i~e~~-~~~~~~~~~~e~~~~~~Rs~iAlg~~~~vl~ei~~---~~~~~l~av~~la~y~~~~~~~e~~l 86 (290)
T PF04733_consen 11 QFYLGNYQQCINEAS-LKSFSPENKLERDFYQYRSYIALGQYDSVLSEIKK---SSSPELQAVRLLAEYLSSPSDKESAL 86 (290)
T ss_dssp HHCTT-HHHHCHHHH-CHTSTCHHHHHHHHHHHHHHHHTT-HHHHHHHS-T---TSSCCCHHHHHHHHHHCTSTTHHCHH
T ss_pred HHHhhhHHHHHHHhh-ccCCCchhHHHHHHHHHHHHHHcCChhHHHHHhcc---CCChhHHHHHHHHHHHhCccchHHHH
Confidence 445566666665554 222222 1233455666777777776655543322 12223345555565554444555566
Q ss_pred HHHHHHHhhCCCCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhcCCCCCcHHHHHHHHHHHHhcCCHHHHHHHHHHh
Q 003563 190 GILEEYLKVHPSDADLSVIDLLVAILMENNAYEKTLQHIEHAQIVRFSGKELPLKLKVKAGICYLRLGNMEKAEILFADL 269 (810)
Q Consensus 190 ~~~~~~l~~~p~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~ 269 (810)
..++..+..........+....|.++...|++++|++.+.+. ...+.......++...++++.|.+.++.+
T Consensus 87 ~~l~~~~~~~~~~~~~~~~~~~A~i~~~~~~~~~AL~~l~~~---------~~lE~~al~Vqi~L~~~R~dlA~k~l~~~ 157 (290)
T PF04733_consen 87 EELKELLADQAGESNEIVQLLAATILFHEGDYEEALKLLHKG---------GSLELLALAVQILLKMNRPDLAEKELKNM 157 (290)
T ss_dssp HHHHHCCCTS---CHHHHHHHHHHHHCCCCHHHHHHCCCTTT---------TCHHHHHHHHHHHHHTT-HHHHHHHHHHH
T ss_pred HHHHHHHHhccccccHHHHHHHHHHHHHcCCHHHHHHHHHcc---------CcccHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 555554433222122223445566777778888887776542 34566666777888888888888888887
Q ss_pred hccCCchhHhHHHHHHHHHHHcC--CcHHHHHHHHHHHhccCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHhhcCCCH
Q 003563 270 QWKNAIDHADLITEVADTLMSLG--HSNSALKYYHFLETNAGTDNGYLYLKLAECYLSLKERAHAIMFFYKALDRFEDNI 347 (810)
Q Consensus 270 ~~~~~~~~~~~~~~la~~~~~~~--~~~~A~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~ 347 (810)
...+. +..-+....+++.+..| ++.+|.-+|+.+.+. .+..+.++..+|.|+..+|++++|...++++++.+|+++
T Consensus 158 ~~~~e-D~~l~qLa~awv~l~~g~e~~~~A~y~f~El~~~-~~~t~~~lng~A~~~l~~~~~~eAe~~L~~al~~~~~~~ 235 (290)
T PF04733_consen 158 QQIDE-DSILTQLAEAWVNLATGGEKYQDAFYIFEELSDK-FGSTPKLLNGLAVCHLQLGHYEEAEELLEEALEKDPNDP 235 (290)
T ss_dssp HCCSC-CHHHHHHHHHHHHHHHTTTCCCHHHHHHHHHHCC-S--SHHHHHHHHHHHHHCT-HHHHHHHHHHHCCC-CCHH
T ss_pred HhcCC-cHHHHHHHHHHHHHHhCchhHHHHHHHHHHHHhc-cCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhccCCH
Confidence 65543 34444445555555555 588999999887754 567888888899999999999999999999999999999
Q ss_pred HHHHHHHHHHHHcCCH-HHHHHhcCCCCCCCccc
Q 003563 348 DARLTLASLLLEEAKE-EEAITLLSPPKDLDSLD 380 (810)
Q Consensus 348 ~~~~~la~~~~~~g~~-~~A~~~~~~a~~~~~~~ 380 (810)
+++.+++.+....|+. +.+.+++.+....+|..
T Consensus 236 d~LaNliv~~~~~gk~~~~~~~~l~qL~~~~p~h 269 (290)
T PF04733_consen 236 DTLANLIVCSLHLGKPTEAAERYLSQLKQSNPNH 269 (290)
T ss_dssp HHHHHHHHHHHHTT-TCHHHHHHHHHCHHHTTTS
T ss_pred HHHHHHHHHHHHhCCChhHHHHHHHHHHHhCCCC
Confidence 9999998888888887 66677777777777754
No 125
>PLN03088 SGT1, suppressor of G2 allele of SKP1; Provisional
Probab=99.22 E-value=2.6e-10 Score=118.39 Aligned_cols=114 Identities=19% Similarity=0.207 Sum_probs=95.6
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHc
Q 003563 35 KMLGEASLQYAYGNFEQAISLLKEVVRLSPNLPETYNTLGLAHSALGNHKSAFDFYVIAAHLSPKDSALWKQLLTFAVQK 114 (810)
Q Consensus 35 ~~l~~a~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~p~~~~~~~~la~~~~~~ 114 (810)
.+..+|..++..|+|++|+..|+++++.+|+++.+++.+|.++...|++++|+..+++++.++|.++.+++.+|.++...
T Consensus 4 ~l~~~a~~a~~~~~~~~Ai~~~~~Al~~~P~~~~a~~~~a~~~~~~g~~~eAl~~~~~Al~l~P~~~~a~~~lg~~~~~l 83 (356)
T PLN03088 4 DLEDKAKEAFVDDDFALAVDLYTQAIDLDPNNAELYADRAQANIKLGNFTEAVADANKAIELDPSLAKAYLRKGTACMKL 83 (356)
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcCCHHHHHHHHHHHHHh
Confidence 46677888888888888888888888888888888888888888888888888888888888888888888888888888
Q ss_pred CCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHc
Q 003563 115 GDTAQAMYYIRQAIRAEPKDISLRIHLASFYVEI 148 (810)
Q Consensus 115 g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~ 148 (810)
|++++|+..|+++++++|+++.+...++.+...+
T Consensus 84 g~~~eA~~~~~~al~l~P~~~~~~~~l~~~~~kl 117 (356)
T PLN03088 84 EEYQTAKAALEKGASLAPGDSRFTKLIKECDEKI 117 (356)
T ss_pred CCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHH
Confidence 8888888888888888888888777776665444
No 126
>PF04733 Coatomer_E: Coatomer epsilon subunit; InterPro: IPR006822 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the epsilon subunit of the coatomer complex, which is involved in the regulation of intracellular protein trafficking between the endoplasmic reticulum and the Golgi complex []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006890 retrograde vesicle-mediated transport, Golgi to ER, 0030126 COPI vesicle coat; PDB: 3MV2_B 3MV3_F 3MKR_A.
Probab=99.18 E-value=2.4e-10 Score=113.87 Aligned_cols=255 Identities=18% Similarity=0.228 Sum_probs=129.0
Q ss_pred HHHHHHcCCHHHHHHHHHHHHHhCCC-ChHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCHH
Q 003563 40 ASLQYAYGNFEQAISLLKEVVRLSPN-LPETYNTLGLAHSALGNHKSAFDFYVIAAHLSPKDSALWKQLLTFAVQKGDTA 118 (810)
Q Consensus 40 a~~~~~~g~~~~A~~~~~~~l~~~p~-~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~p~~~~~~~~la~~~~~~g~~~ 118 (810)
...+|-.|+|..++...+ ....+|. ..+....+.+++..+|+++..+.-... ..+....+...++..+...++-+
T Consensus 8 vrn~fy~G~Y~~~i~e~~-~~~~~~~~~~e~~~~~~Rs~iAlg~~~~vl~ei~~---~~~~~l~av~~la~y~~~~~~~e 83 (290)
T PF04733_consen 8 VRNQFYLGNYQQCINEAS-LKSFSPENKLERDFYQYRSYIALGQYDSVLSEIKK---SSSPELQAVRLLAEYLSSPSDKE 83 (290)
T ss_dssp HHHHHCTT-HHHHCHHHH-CHTSTCHHHHHHHHHHHHHHHHTT-HHHHHHHS-T---TSSCCCHHHHHHHHHHCTSTTHH
T ss_pred HHHHHHhhhHHHHHHHhh-ccCCCchhHHHHHHHHHHHHHHcCChhHHHHHhcc---CCChhHHHHHHHHHHHhCccchH
Confidence 345666788887776666 2222222 344566677777777777665544432 11223344455555554444555
Q ss_pred HHHHHHHHHHHcC--CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHH
Q 003563 119 QAMYYIRQAIRAE--PKDISLRIHLASFYVEIGDYEKAAESYEQIQKLFPDNVDATKTGAQLFLKCGQTARSIGILEEYL 196 (810)
Q Consensus 119 ~A~~~~~~al~~~--p~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~l 196 (810)
.++..++..+... +.++......|.++...|++++|++.+.+. .+.+.......++...++++.|.+.++.+.
T Consensus 84 ~~l~~l~~~~~~~~~~~~~~~~~~~A~i~~~~~~~~~AL~~l~~~-----~~lE~~al~Vqi~L~~~R~dlA~k~l~~~~ 158 (290)
T PF04733_consen 84 SALEELKELLADQAGESNEIVQLLAATILFHEGDYEEALKLLHKG-----GSLELLALAVQILLKMNRPDLAEKELKNMQ 158 (290)
T ss_dssp CHHHHHHHCCCTS---CHHHHHHHHHHHHCCCCHHHHHHCCCTTT-----TCHHHHHHHHHHHHHTT-HHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhccccccHHHHHHHHHHHHHcCCHHHHHHHHHcc-----CcccHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 5555544433221 123334455556666667777666666543 445556666666666667766666666665
Q ss_pred hhCCCCCChHHHHHHHHH--HHHcC--CHHHHHHHHHHHHHHhcCCCCCcHHHHHHHHHHHHhcCCHHHHHHHHHHhhcc
Q 003563 197 KVHPSDADLSVIDLLVAI--LMENN--AYEKTLQHIEHAQIVRFSGKELPLKLKVKAGICYLRLGNMEKAEILFADLQWK 272 (810)
Q Consensus 197 ~~~p~~~~~~~~~~la~~--~~~~g--~~~~A~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~ 272 (810)
+.+.+. +...++.. ....| .+.+|...|++..+. .+..+.+...++.++..+|++++|...+.+++..
T Consensus 159 ~~~eD~----~l~qLa~awv~l~~g~e~~~~A~y~f~El~~~----~~~t~~~lng~A~~~l~~~~~~eAe~~L~~al~~ 230 (290)
T PF04733_consen 159 QIDEDS----ILTQLAEAWVNLATGGEKYQDAFYIFEELSDK----FGSTPKLLNGLAVCHLQLGHYEEAEELLEEALEK 230 (290)
T ss_dssp CCSCCH----HHHHHHHHHHHHHHTTTCCCHHHHHHHHHHCC----S--SHHHHHHHHHHHHHCT-HHHHHHHHHHHCCC
T ss_pred hcCCcH----HHHHHHHHHHHHHhCchhHHHHHHHHHHHHhc----cCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHh
Confidence 554332 23333332 22223 456666666664433 2334455555556666666666666666665555
Q ss_pred CCchhHhHHHHHHHHHHHcCCc-HHHHHHHHHHHhccCCCCH
Q 003563 273 NAIDHADLITEVADTLMSLGHS-NSALKYYHFLETNAGTDNG 313 (810)
Q Consensus 273 ~~~~~~~~~~~la~~~~~~~~~-~~A~~~~~~~~~~~~~~~~ 313 (810)
+|. +++++.+++.+....|+. +.+.+++.++... .|..+
T Consensus 231 ~~~-~~d~LaNliv~~~~~gk~~~~~~~~l~qL~~~-~p~h~ 270 (290)
T PF04733_consen 231 DPN-DPDTLANLIVCSLHLGKPTEAAERYLSQLKQS-NPNHP 270 (290)
T ss_dssp -CC-HHHHHHHHHHHHHHTT-TCHHHHHHHHHCHHH-TTTSH
T ss_pred ccC-CHHHHHHHHHHHHHhCCChhHHHHHHHHHHHh-CCCCh
Confidence 543 555555555555555555 3333444444333 44433
No 127
>PRK10866 outer membrane biogenesis protein BamD; Provisional
Probab=99.13 E-value=1.6e-08 Score=98.51 Aligned_cols=186 Identities=13% Similarity=0.037 Sum_probs=140.2
Q ss_pred CChHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCCCHHH---HHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCH---HHH
Q 003563 65 NLPETYNTLGLAHSALGNHKSAFDFYVIAAHLSPKDSAL---WKQLLTFAVQKGDTAQAMYYIRQAIRAEPKDI---SLR 138 (810)
Q Consensus 65 ~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~p~~~~~---~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~---~~~ 138 (810)
..+..++..|..+...|++++|+..|++++...|..+.+ .+.+|.++++.+++++|+..+++.++.+|+++ .++
T Consensus 30 ~~~~~~Y~~A~~~~~~g~y~~Ai~~f~~l~~~yP~s~~a~~a~l~la~ayy~~~~y~~A~~~~e~fi~~~P~~~~~~~a~ 109 (243)
T PRK10866 30 NPPSEIYATAQQKLQDGNWKQAITQLEALDNRYPFGPYSQQVQLDLIYAYYKNADLPLAQAAIDRFIRLNPTHPNIDYVL 109 (243)
T ss_pred CCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCcCCCchHHHH
Confidence 366778888999999999999999999999998887655 47889999999999999999999999888764 567
Q ss_pred HHHHHHHHHcC---------------C---HHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHhhCC
Q 003563 139 IHLASFYVEIG---------------D---YEKAAESYEQIQKLFPDNVDATKTGAQLFLKCGQTARSIGILEEYLKVHP 200 (810)
Q Consensus 139 ~~la~~~~~~g---------------~---~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p 200 (810)
+.+|.++...+ + ..+|+..|++.++..|++.-+- +|...+..+-..-
T Consensus 110 Y~~g~~~~~~~~~~~~~~~~~~~~~rD~~~~~~A~~~~~~li~~yP~S~ya~--------------~A~~rl~~l~~~l- 174 (243)
T PRK10866 110 YMRGLTNMALDDSALQGFFGVDRSDRDPQHARAAFRDFSKLVRGYPNSQYTT--------------DATKRLVFLKDRL- 174 (243)
T ss_pred HHHHHhhhhcchhhhhhccCCCccccCHHHHHHHHHHHHHHHHHCcCChhHH--------------HHHHHHHHHHHHH-
Confidence 77887764443 1 3467788888888888764321 1111111111000
Q ss_pred CCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhcCCCCCcHHHHHHHHHHHHhcCCHHHHHHHHHHhh
Q 003563 201 SDADLSVIDLLVAILMENNAYEKTLQHIEHAQIVRFSGKELPLKLKVKAGICYLRLGNMEKAEILFADLQ 270 (810)
Q Consensus 201 ~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~ 270 (810)
..--...|..|.+.|.|..|+.-++.+++.+|.. +...+++..++..+..+|..++|......+.
T Consensus 175 ----a~~e~~ia~~Y~~~~~y~AA~~r~~~v~~~Yp~t-~~~~eal~~l~~ay~~lg~~~~a~~~~~~l~ 239 (243)
T PRK10866 175 ----AKYELSVAEYYTKRGAYVAVVNRVEQMLRDYPDT-QATRDALPLMENAYRQLQLNAQADKVAKIIA 239 (243)
T ss_pred ----HHHHHHHHHHHHHcCchHHHHHHHHHHHHHCCCC-chHHHHHHHHHHHHHHcCChHHHHHHHHHHh
Confidence 0123378999999999999999999999997644 5567899999999999999999998877653
No 128
>PF13525 YfiO: Outer membrane lipoprotein; PDB: 3TGO_A 3Q5M_A 2YHC_A.
Probab=99.12 E-value=7.3e-09 Score=98.55 Aligned_cols=176 Identities=16% Similarity=0.163 Sum_probs=110.4
Q ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC---hHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCCCH---HHHH
Q 003563 32 GVTKMLGEASLQYAYGNFEQAISLLKEVVRLSPNL---PETYNTLGLAHSALGNHKSAFDFYVIAAHLSPKDS---ALWK 105 (810)
Q Consensus 32 ~~~~~l~~a~~~~~~g~~~~A~~~~~~~l~~~p~~---~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~p~~~---~~~~ 105 (810)
+...++..|..++..|+|.+|+..|++++...|.. +.+.+.+|.+++..|++++|+..+++.+...|+++ .+++
T Consensus 4 ~~~~lY~~a~~~~~~g~y~~Ai~~f~~l~~~~P~s~~a~~A~l~la~a~y~~~~y~~A~~~~~~fi~~yP~~~~~~~A~Y 83 (203)
T PF13525_consen 4 TAEALYQKALEALQQGDYEEAIKLFEKLIDRYPNSPYAPQAQLMLAYAYYKQGDYEEAIAAYERFIKLYPNSPKADYALY 83 (203)
T ss_dssp -HHHHHHHHHHHHHCT-HHHHHHHHHHHHHH-TTSTTHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHH-TT-TTHHHHHH
T ss_pred CHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCCCChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCCcchhhHHH
Confidence 45678899999999999999999999999988774 57889999999999999999999999999888764 5677
Q ss_pred HHHHHHHHcC-----------CHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHH
Q 003563 106 QLLTFAVQKG-----------DTAQAMYYIRQAIRAEPKDISLRIHLASFYVEIGDYEKAAESYEQIQKLFPDNVDATKT 174 (810)
Q Consensus 106 ~la~~~~~~g-----------~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~ 174 (810)
.+|.+++.+. ...+|+..|+..+...|+...+- +|...+..+-.. -..--..
T Consensus 84 ~~g~~~~~~~~~~~~~~~D~~~~~~A~~~~~~li~~yP~S~y~~--------------~A~~~l~~l~~~---la~~e~~ 146 (203)
T PF13525_consen 84 MLGLSYYKQIPGILRSDRDQTSTRKAIEEFEELIKRYPNSEYAE--------------EAKKRLAELRNR---LAEHELY 146 (203)
T ss_dssp HHHHHHHHHHHHHH-TT---HHHHHHHHHHHHHHHH-TTSTTHH--------------HHHHHHHHHHHH---HHHHHHH
T ss_pred HHHHHHHHhCccchhcccChHHHHHHHHHHHHHHHHCcCchHHH--------------HHHHHHHHHHHH---HHHHHHH
Confidence 7787765542 23456666666666666654321 000000000000 0011234
Q ss_pred HHHHHHHcCChHHHHHHHHHHHhhCCCCCCh-HHHHHHHHHHHHcCCHHHH
Q 003563 175 GAQLFLKCGQTARSIGILEEYLKVHPSDADL-SVIDLLVAILMENNAYEKT 224 (810)
Q Consensus 175 la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~-~~~~~la~~~~~~g~~~~A 224 (810)
+|..|.+.|.+..|+..++.+++..|+.... .++..++..+...|..+.|
T Consensus 147 ia~~Y~~~~~y~aA~~r~~~v~~~yp~t~~~~~al~~l~~~y~~l~~~~~a 197 (203)
T PF13525_consen 147 IARFYYKRGKYKAAIIRFQYVIENYPDTPAAEEALARLAEAYYKLGLKQAA 197 (203)
T ss_dssp HHHHHHCTT-HHHHHHHHHHHHHHSTTSHHHHHHHHHHHHHHHHTT-HHHH
T ss_pred HHHHHHHcccHHHHHHHHHHHHHHCCCCchHHHHHHHHHHHHHHhCChHHH
Confidence 5666666777777777777766666665432 3556666666666666643
No 129
>PLN03088 SGT1, suppressor of G2 allele of SKP1; Provisional
Probab=99.11 E-value=1.8e-09 Score=112.09 Aligned_cols=113 Identities=18% Similarity=0.204 Sum_probs=86.1
Q ss_pred HHHHHHHHHHcCChHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHcC
Q 003563 70 YNTLGLAHSALGNHKSAFDFYVIAAHLSPKDSALWKQLLTFAVQKGDTAQAMYYIRQAIRAEPKDISLRIHLASFYVEIG 149 (810)
Q Consensus 70 ~~~l~~~~~~~g~~~~A~~~~~~a~~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g 149 (810)
+...|..++..|++++|+..|.+++.++|+++.++..+|.++...|++++|+..+++++.++|+++.+++.+|.++..+|
T Consensus 5 l~~~a~~a~~~~~~~~Ai~~~~~Al~~~P~~~~a~~~~a~~~~~~g~~~eAl~~~~~Al~l~P~~~~a~~~lg~~~~~lg 84 (356)
T PLN03088 5 LEDKAKEAFVDDDFALAVDLYTQAIDLDPNNAELYADRAQANIKLGNFTEAVADANKAIELDPSLAKAYLRKGTACMKLE 84 (356)
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcCCHHHHHHHHHHHHHhC
Confidence 44557777777788888888888888888777777778888888888888888888888877877777777788888888
Q ss_pred CHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHc
Q 003563 150 DYEKAAESYEQIQKLFPDNVDATKTGAQLFLKC 182 (810)
Q Consensus 150 ~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~ 182 (810)
++++|+..|+++++++|+++.+...++.+....
T Consensus 85 ~~~eA~~~~~~al~l~P~~~~~~~~l~~~~~kl 117 (356)
T PLN03088 85 EYQTAKAALEKGASLAPGDSRFTKLIKECDEKI 117 (356)
T ss_pred CHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHH
Confidence 888888888888887777777766666554433
No 130
>COG4235 Cytochrome c biogenesis factor [Posttranslational modification, protein turnover, chaperones]
Probab=99.10 E-value=3e-09 Score=101.68 Aligned_cols=119 Identities=29% Similarity=0.346 Sum_probs=64.1
Q ss_pred HHHHHHHHHHHHhCCCChHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcC---CHHHHHHHHHH
Q 003563 50 EQAISLLKEVVRLSPNLPETYNTLGLAHSALGNHKSAFDFYVIAAHLSPKDSALWKQLLTFAVQKG---DTAQAMYYIRQ 126 (810)
Q Consensus 50 ~~A~~~~~~~l~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~p~~~~~~~~la~~~~~~g---~~~~A~~~~~~ 126 (810)
+.-+.-++..++.+|++++.|..||.+|..+|++..|...|.++.++.|++++.+..+|.+++.+. ...++...+++
T Consensus 139 ~~l~a~Le~~L~~nP~d~egW~~Lg~~ym~~~~~~~A~~AY~~A~rL~g~n~~~~~g~aeaL~~~a~~~~ta~a~~ll~~ 218 (287)
T COG4235 139 EALIARLETHLQQNPGDAEGWDLLGRAYMALGRASDALLAYRNALRLAGDNPEILLGLAEALYYQAGQQMTAKARALLRQ 218 (287)
T ss_pred HHHHHHHHHHHHhCCCCchhHHHHHHHHHHhcchhHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcCCcccHHHHHHHHH
Confidence 334444445555555555555555555555555555555555555555555555555555544432 23445555555
Q ss_pred HHHcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC
Q 003563 127 AIRAEPKDISLRIHLASFYVEIGDYEKAAESYEQIQKLFPDN 168 (810)
Q Consensus 127 al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~ 168 (810)
++..+|.+..+.+.+|..+++.|++.+|+..++.+++..|.+
T Consensus 219 al~~D~~~iral~lLA~~afe~g~~~~A~~~Wq~lL~~lp~~ 260 (287)
T COG4235 219 ALALDPANIRALSLLAFAAFEQGDYAEAAAAWQMLLDLLPAD 260 (287)
T ss_pred HHhcCCccHHHHHHHHHHHHHcccHHHHHHHHHHHHhcCCCC
Confidence 555555555555555555555555555555555555554443
No 131
>KOG3617 consensus WD40 and TPR repeat-containing protein [General function prediction only]
Probab=99.10 E-value=4.2e-06 Score=89.17 Aligned_cols=209 Identities=15% Similarity=0.086 Sum_probs=132.8
Q ss_pred HHHcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHcCChHHHHHHH------------HHHHhcCCCCHHHHHHHHHH
Q 003563 43 QYAYGNFEQAISLLKEVVRLSPNLPETYNTLGLAHSALGNHKSAFDFY------------VIAAHLSPKDSALWKQLLTF 110 (810)
Q Consensus 43 ~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~------------~~a~~~~p~~~~~~~~la~~ 110 (810)
|...|+.+.|.+..+-+ ....+|-+++....+..+.+-|.-++ +++.+ +|+ +.-...|.+
T Consensus 738 yvtiG~MD~AfksI~~I-----kS~~vW~nmA~McVkT~RLDVAkVClGhm~~aRgaRAlR~a~q-~~~--e~eakvAvL 809 (1416)
T KOG3617|consen 738 YVTIGSMDAAFKSIQFI-----KSDSVWDNMASMCVKTRRLDVAKVCLGHMKNARGARALRRAQQ-NGE--EDEAKVAVL 809 (1416)
T ss_pred EEEeccHHHHHHHHHHH-----hhhHHHHHHHHHhhhhccccHHHHhhhhhhhhhhHHHHHHHHh-CCc--chhhHHHHH
Confidence 44568888887776654 23467888888888877777665554 22222 333 334456777
Q ss_pred HHHcCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCChHHHHH
Q 003563 111 AVQKGDTAQAMYYIRQAIRAEPKDISLRIHLASFYVEIGDYEKAAESYEQIQKLFPDNVDATKTGAQLFLKCGQTARSIG 190 (810)
Q Consensus 111 ~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~ 190 (810)
..++|..++|...|.+.-.. -.+-.+|...|.+++|.+.-+.--.+. -...+++.|..+...++.+.|++
T Consensus 810 AieLgMlEeA~~lYr~ckR~--------DLlNKlyQs~g~w~eA~eiAE~~DRiH--Lr~Tyy~yA~~Lear~Di~~Ale 879 (1416)
T KOG3617|consen 810 AIELGMLEEALILYRQCKRY--------DLLNKLYQSQGMWSEAFEIAETKDRIH--LRNTYYNYAKYLEARRDIEAALE 879 (1416)
T ss_pred HHHHhhHHHHHHHHHHHHHH--------HHHHHHHHhcccHHHHHHHHhhcccee--hhhhHHHHHHHHHhhccHHHHHH
Confidence 88899999999999987653 345567778888888877665422221 23567788888888888888888
Q ss_pred HHHHH----------HhhCCCC--------CChHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhcC---------------
Q 003563 191 ILEEY----------LKVHPSD--------ADLSVIDLLVAILMENNAYEKTLQHIEHAQIVRFS--------------- 237 (810)
Q Consensus 191 ~~~~~----------l~~~p~~--------~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~--------------- 237 (810)
+|+++ +..+|.. .+...|...|..+...|+.+.|+.+|..+...+..
T Consensus 880 yyEK~~~hafev~rmL~e~p~~~e~Yv~~~~d~~L~~WWgqYlES~GemdaAl~~Y~~A~D~fs~VrI~C~qGk~~kAa~ 959 (1416)
T KOG3617|consen 880 YYEKAGVHAFEVFRMLKEYPKQIEQYVRRKRDESLYSWWGQYLESVGEMDAALSFYSSAKDYFSMVRIKCIQGKTDKAAR 959 (1416)
T ss_pred HHHhcCChHHHHHHHHHhChHHHHHHHHhccchHHHHHHHHHHhcccchHHHHHHHHHhhhhhhheeeEeeccCchHHHH
Confidence 88764 2223321 11235667788888888888888888877654210
Q ss_pred --CCCCcHHHHHHHHHHHHhcCCHHHHHHHHHHh
Q 003563 238 --GKELPLKLKVKAGICYLRLGNMEKAEILFADL 269 (810)
Q Consensus 238 --~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~ 269 (810)
....+..+.+.+|..|...|++.+|+..|.++
T Consensus 960 iA~esgd~AAcYhlaR~YEn~g~v~~Av~FfTrA 993 (1416)
T KOG3617|consen 960 IAEESGDKAACYHLARMYENDGDVVKAVKFFTRA 993 (1416)
T ss_pred HHHhcccHHHHHHHHHHhhhhHHHHHHHHHHHHH
Confidence 01223334455555555555555555555553
No 132
>PF13525 YfiO: Outer membrane lipoprotein; PDB: 3TGO_A 3Q5M_A 2YHC_A.
Probab=99.08 E-value=1.2e-08 Score=97.15 Aligned_cols=179 Identities=15% Similarity=0.143 Sum_probs=117.8
Q ss_pred ChHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCCC---HHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCH---HHHH
Q 003563 66 LPETYNTLGLAHSALGNHKSAFDFYVIAAHLSPKD---SALWKQLLTFAVQKGDTAQAMYYIRQAIRAEPKDI---SLRI 139 (810)
Q Consensus 66 ~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~p~~---~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~---~~~~ 139 (810)
.+..++..|..++..|++.+|+..|+++....|.. +.+.+.+|.+++..|++++|+..+++.++..|+++ .+++
T Consensus 4 ~~~~lY~~a~~~~~~g~y~~Ai~~f~~l~~~~P~s~~a~~A~l~la~a~y~~~~y~~A~~~~~~fi~~yP~~~~~~~A~Y 83 (203)
T PF13525_consen 4 TAEALYQKALEALQQGDYEEAIKLFEKLIDRYPNSPYAPQAQLMLAYAYYKQGDYEEAIAAYERFIKLYPNSPKADYALY 83 (203)
T ss_dssp -HHHHHHHHHHHHHCT-HHHHHHHHHHHHHH-TTSTTHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHH-TT-TTHHHHHH
T ss_pred CHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCCCChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCCcchhhHHH
Confidence 45677888888888888888888888888777654 46677888888888888888888888888877664 4567
Q ss_pred HHHHHHHHcC-----------CHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHhhCCCCCChHHH
Q 003563 140 HLASFYVEIG-----------DYEKAAESYEQIQKLFPDNVDATKTGAQLFLKCGQTARSIGILEEYLKVHPSDADLSVI 208 (810)
Q Consensus 140 ~la~~~~~~g-----------~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~ 208 (810)
.+|.++..+. ...+|+..|+..+...|++.-+-...-. +..++..+. .--
T Consensus 84 ~~g~~~~~~~~~~~~~~~D~~~~~~A~~~~~~li~~yP~S~y~~~A~~~-----------l~~l~~~la--------~~e 144 (203)
T PF13525_consen 84 MLGLSYYKQIPGILRSDRDQTSTRKAIEEFEELIKRYPNSEYAEEAKKR-----------LAELRNRLA--------EHE 144 (203)
T ss_dssp HHHHHHHHHHHHHH-TT---HHHHHHHHHHHHHHHH-TTSTTHHHHHHH-----------HHHHHHHHH--------HHH
T ss_pred HHHHHHHHhCccchhcccChHHHHHHHHHHHHHHHHCcCchHHHHHHHH-----------HHHHHHHHH--------HHH
Confidence 7777665442 2346666666666666665422111000 001111111 123
Q ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHHhcCCCCCcHHHHHHHHHHHHhcCCHHHHHH
Q 003563 209 DLLVAILMENNAYEKTLQHIEHAQIVRFSGKELPLKLKVKAGICYLRLGNMEKAEI 264 (810)
Q Consensus 209 ~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~ 264 (810)
..+|..|.+.|.+..|+..++.+++.+|.. +...+++..++.++..+|..+.|..
T Consensus 145 ~~ia~~Y~~~~~y~aA~~r~~~v~~~yp~t-~~~~~al~~l~~~y~~l~~~~~a~~ 199 (203)
T PF13525_consen 145 LYIARFYYKRGKYKAAIIRFQYVIENYPDT-PAAEEALARLAEAYYKLGLKQAADT 199 (203)
T ss_dssp HHHHHHHHCTT-HHHHHHHHHHHHHHSTTS-HHHHHHHHHHHHHHHHTT-HHHHHH
T ss_pred HHHHHHHHHcccHHHHHHHHHHHHHHCCCC-chHHHHHHHHHHHHHHhCChHHHHH
Confidence 478999999999999999999999996633 3345789999999999999985543
No 133
>KOG2053 consensus Mitochondrial inheritance and actin cytoskeleton organization protein [Cytoskeleton]
Probab=99.07 E-value=9e-06 Score=88.21 Aligned_cols=135 Identities=20% Similarity=0.163 Sum_probs=101.4
Q ss_pred HHHHHcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCHHHH
Q 003563 41 SLQYAYGNFEQAISLLKEVVRLSPNLPETYNTLGLAHSALGNHKSAFDFYVIAAHLSPKDSALWKQLLTFAVQKGDTAQA 120 (810)
Q Consensus 41 ~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~p~~~~~~~~la~~~~~~g~~~~A 120 (810)
.-....+++..|+..+.+.++..|+.+-+....|.++.++|+.++|..+++..-...+++...+..+-.+|..+|++++|
T Consensus 17 ~d~ld~~qfkkal~~~~kllkk~Pn~~~a~vLkaLsl~r~gk~~ea~~~Le~~~~~~~~D~~tLq~l~~~y~d~~~~d~~ 96 (932)
T KOG2053|consen 17 YDLLDSSQFKKALAKLGKLLKKHPNALYAKVLKALSLFRLGKGDEALKLLEALYGLKGTDDLTLQFLQNVYRDLGKLDEA 96 (932)
T ss_pred HHHhhhHHHHHHHHHHHHHHHHCCCcHHHHHHHHHHHHHhcCchhHHHHHhhhccCCCCchHHHHHHHHHHHHHhhhhHH
Confidence 34567788888888888888888888888888888888888888888777666666667777777778888888888888
Q ss_pred HHHHHHHHHcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHH
Q 003563 121 MYYIRQAIRAEPKDISLRIHLASFYVEIGDYEKAAESYEQIQKLFPDNVDATKTGA 176 (810)
Q Consensus 121 ~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~la 176 (810)
..+|++++..+|. ......+=.+|.+.+.|.+-.+.--+..+..|.++-......
T Consensus 97 ~~~Ye~~~~~~P~-eell~~lFmayvR~~~yk~qQkaa~~LyK~~pk~~yyfWsV~ 151 (932)
T KOG2053|consen 97 VHLYERANQKYPS-EELLYHLFMAYVREKSYKKQQKAALQLYKNFPKRAYYFWSVI 151 (932)
T ss_pred HHHHHHHHhhCCc-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCcccchHHHHH
Confidence 8888888888887 667777777777777777666665566666676655444333
No 134
>KOG1941 consensus Acetylcholine receptor-associated protein of the synapse (rapsyn) [Extracellular structures]
Probab=99.04 E-value=1.2e-07 Score=91.34 Aligned_cols=308 Identities=17% Similarity=0.115 Sum_probs=178.1
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChH---HHHHHHHHHHHcCChHHHHHHHHHHHhcCCCCHHHHHHHHHHH
Q 003563 35 KMLGEASLQYAYGNFEQAISLLKEVVRLSPNLPE---TYNTLGLAHSALGNHKSAFDFYVIAAHLSPKDSALWKQLLTFA 111 (810)
Q Consensus 35 ~~l~~a~~~~~~g~~~~A~~~~~~~l~~~p~~~~---~~~~l~~~~~~~g~~~~A~~~~~~a~~~~p~~~~~~~~la~~~ 111 (810)
..+..|..++...++++|+..+.+.+..-.+... .+-.+..+...+|.+++++.+--..+...
T Consensus 8 ~q~~~g~~Ly~s~~~~~al~~w~~~L~~l~~~~~Rf~~lG~l~~a~s~~g~y~~mL~~a~sqi~~a-------------- 73 (518)
T KOG1941|consen 8 KQIEKGLQLYQSNQTEKALQVWTKVLEKLSDLMGRFRVLGCLVTAHSEMGRYKEMLKFAVSQIDTA-------------- 73 (518)
T ss_pred HHHHHHHhHhcCchHHHHHHHHHHHHHHHHHHHHHHHHhccchhhhhhhHHHHHHHHHHHHHHHHH--------------
Confidence 3455666666677777777766666654333222 22223334445555555444332222111
Q ss_pred HHcCCHHHHHHHHHHHHHcCC--CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC-----HHHHHHHHHHHHHcCC
Q 003563 112 VQKGDTAQAMYYIRQAIRAEP--KDISLRIHLASFYVEIGDYEKAAESYEQIQKLFPDN-----VDATKTGAQLFLKCGQ 184 (810)
Q Consensus 112 ~~~g~~~~A~~~~~~al~~~p--~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~-----~~~~~~la~~~~~~g~ 184 (810)
.+... ...+++.+++..+....++.+++.+-+..+.+.... ..+...++..+..++.
T Consensus 74 ----------------~~~~ds~~~~ea~lnlar~~e~l~~f~kt~~y~k~~l~lpgt~~~~~~gq~~l~~~~Ahlgls~ 137 (518)
T KOG1941|consen 74 ----------------RELEDSDFLLEAYLNLARSNEKLCEFHKTISYCKTCLGLPGTRAGQLGGQVSLSMGNAHLGLSV 137 (518)
T ss_pred ----------------HHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHhcCCCCCcccccchhhhhHHHHhhhHHH
Confidence 11100 012345556666666666666666655555442222 2345556667777777
Q ss_pred hHHHHHHHHHHHhhCCCCCCh----HHHHHHHHHHHHcCCHHHHHHHHHHHHHHhcCCCCCc------HHHHHHHHHHHH
Q 003563 185 TARSIGILEEYLKVHPSDADL----SVIDLLVAILMENNAYEKTLQHIEHAQIVRFSGKELP------LKLKVKAGICYL 254 (810)
Q Consensus 185 ~~~A~~~~~~~l~~~p~~~~~----~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~------~~~~~~la~~~~ 254 (810)
++++++.|+++++....+.++ .++..+|.++....++++|.-+..++.++...-.-.. ..+.+.++..+.
T Consensus 138 fq~~Lesfe~A~~~A~~~~D~~LElqvcv~Lgslf~~l~D~~Kal~f~~kA~~lv~s~~l~d~~~kyr~~~lyhmaValR 217 (518)
T KOG1941|consen 138 FQKALESFEKALRYAHNNDDAMLELQVCVSLGSLFAQLKDYEKALFFPCKAAELVNSYGLKDWSLKYRAMSLYHMAVALR 217 (518)
T ss_pred HHHHHHHHHHHHHHhhccCCceeeeehhhhHHHHHHHHHhhhHHhhhhHhHHHHHHhcCcCchhHHHHHHHHHHHHHHHH
Confidence 777777777777654433332 4566777777777777777777777766632211111 234566777777
Q ss_pred hcCCHHHHHHHHHHhhc-----cCCchhHhHHHHHHHHHHHcCCcHHHHHHHHHHHhcc-----CCCCHHHHHHHHHHHH
Q 003563 255 RLGNMEKAEILFADLQW-----KNAIDHADLITEVADTLMSLGHSNSALKYYHFLETNA-----GTDNGYLYLKLAECYL 324 (810)
Q Consensus 255 ~~g~~~~A~~~~~~~~~-----~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~-----~~~~~~~~~~la~~~~ 324 (810)
.+|..-.|.++.+++.+ .+..........+|++|...|+.+.|..-|+.+.... .-....++...|.|+.
T Consensus 218 ~~G~LgdA~e~C~Ea~klal~~Gdra~~arc~~~~aDIyR~~gd~e~af~rYe~Am~~m~~~gdrmgqv~al~g~Akc~~ 297 (518)
T KOG1941|consen 218 LLGRLGDAMECCEEAMKLALQHGDRALQARCLLCFADIYRSRGDLERAFRRYEQAMGTMASLGDRMGQVEALDGAAKCLE 297 (518)
T ss_pred HhcccccHHHHHHHHHHHHHHhCChHHHHHHHHHHHHHHHhcccHhHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHH
Confidence 77877777777777533 2222345567778888888888888888888766431 1124556666777776
Q ss_pred HccCHHH-----HHHHHHHHHhhcCCC------HHHHHHHHHHHHHcCCHHHHHHhcCC
Q 003563 325 SLKERAH-----AIMFFYKALDRFEDN------IDARLTLASLLLEEAKEEEAITLLSP 372 (810)
Q Consensus 325 ~~g~~~~-----A~~~~~~al~~~p~~------~~~~~~la~~~~~~g~~~~A~~~~~~ 372 (810)
...-..+ |++.-++++++...- ...+..++.+|...|.-++-...+..
T Consensus 298 ~~r~~~k~~~Crale~n~r~levA~~IG~K~~vlK~hcrla~iYrs~gl~d~~~~h~~r 356 (518)
T KOG1941|consen 298 TLRLQNKICNCRALEFNTRLLEVASSIGAKLSVLKLHCRLASIYRSKGLQDELRAHVVR 356 (518)
T ss_pred HHHHhhcccccchhHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHhccchhHHHHHHHH
Confidence 6555444 777777777764421 34566788888777766655544443
No 135
>PF09976 TPR_21: Tetratricopeptide repeat; InterPro: IPR018704 This domain, found in various hypothetical prokaryotic proteins, has no known function.
Probab=99.03 E-value=1.5e-08 Score=90.81 Aligned_cols=130 Identities=18% Similarity=0.180 Sum_probs=98.4
Q ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC---hHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCCC---HHHHH
Q 003563 32 GVTKMLGEASLQYAYGNFEQAISLLKEVVRLSPNL---PETYNTLGLAHSALGNHKSAFDFYVIAAHLSPKD---SALWK 105 (810)
Q Consensus 32 ~~~~~l~~a~~~~~~g~~~~A~~~~~~~l~~~p~~---~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~p~~---~~~~~ 105 (810)
.....+..+...+..++...+...++.++..+|+. ..+.+.+|.+++..|++++|...|+.++...|+. +.+..
T Consensus 10 ~a~~~y~~~~~~~~~~~~~~~~~~~~~l~~~~~~s~ya~~A~l~lA~~~~~~g~~~~A~~~l~~~~~~~~d~~l~~~a~l 89 (145)
T PF09976_consen 10 QASALYEQALQALQAGDPAKAEAAAEQLAKDYPSSPYAALAALQLAKAAYEQGDYDEAKAALEKALANAPDPELKPLARL 89 (145)
T ss_pred HHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCCCChHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHhhCCCHHHHHHHHH
Confidence 34456666777777888888888888888888887 5567778888888888888888888888876554 34677
Q ss_pred HHHHHHHHcCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Q 003563 106 QLLTFAVQKGDTAQAMYYIRQAIRAEPKDISLRIHLASFYVEIGDYEKAAESYEQIQ 162 (810)
Q Consensus 106 ~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~l 162 (810)
.+|.++...|++++|+..++.. ...+..+.++..+|.++...|++++|+..|++++
T Consensus 90 ~LA~~~~~~~~~d~Al~~L~~~-~~~~~~~~~~~~~Gdi~~~~g~~~~A~~~y~~Al 145 (145)
T PF09976_consen 90 RLARILLQQGQYDEALATLQQI-PDEAFKALAAELLGDIYLAQGDYDEARAAYQKAL 145 (145)
T ss_pred HHHHHHHHcCCHHHHHHHHHhc-cCcchHHHHHHHHHHHHHHCCCHHHHHHHHHHhC
Confidence 7888888888888888888652 3334455667778888888888888888887763
No 136
>COG4235 Cytochrome c biogenesis factor [Posttranslational modification, protein turnover, chaperones]
Probab=99.02 E-value=1.5e-08 Score=96.95 Aligned_cols=113 Identities=21% Similarity=0.195 Sum_probs=54.6
Q ss_pred HHHHhcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHcC---CHHHHHHHHHHHHHhCCC
Q 003563 91 VIAAHLSPKDSALWKQLLTFAVQKGDTAQAMYYIRQAIRAEPKDISLRIHLASFYVEIG---DYEKAAESYEQIQKLFPD 167 (810)
Q Consensus 91 ~~a~~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g---~~~~A~~~~~~~l~~~p~ 167 (810)
+.-+..+|++.+.|..||.+|+.+|++..|...|.+++++.|++++.+..+|.++..+. ...++...+++++..+|.
T Consensus 146 e~~L~~nP~d~egW~~Lg~~ym~~~~~~~A~~AY~~A~rL~g~n~~~~~g~aeaL~~~a~~~~ta~a~~ll~~al~~D~~ 225 (287)
T COG4235 146 ETHLQQNPGDAEGWDLLGRAYMALGRASDALLAYRNALRLAGDNPEILLGLAEALYYQAGQQMTAKARALLRQALALDPA 225 (287)
T ss_pred HHHHHhCCCCchhHHHHHHHHHHhcchhHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcCCcccHHHHHHHHHHHhcCCc
Confidence 33344445555555555555555555555555555555555555555444444443322 233444455555555555
Q ss_pred CHHHHHHHHHHHHHcCChHHHHHHHHHHHhhCCCCC
Q 003563 168 NVDATKTGAQLFLKCGQTARSIGILEEYLKVHPSDA 203 (810)
Q Consensus 168 ~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~ 203 (810)
+..+...+|..++..|++.+|...++..++..|.+.
T Consensus 226 ~iral~lLA~~afe~g~~~~A~~~Wq~lL~~lp~~~ 261 (287)
T COG4235 226 NIRALSLLAFAAFEQGDYAEAAAAWQMLLDLLPADD 261 (287)
T ss_pred cHHHHHHHHHHHHHcccHHHHHHHHHHHHhcCCCCC
Confidence 555555555555555555555555555554444443
No 137
>TIGR02795 tol_pal_ybgF tol-pal system protein YbgF. Members of this protein family are the product of one of seven genes regularly clustered in operons to encode the proteins of the tol-pal system, which is critical for maintaining the integrity of the bacterial outer membrane. The gene for this periplasmic protein has been designated orf2 and ybgF. All members of the seed alignment were from unique tol-pal gene regions from completed bacterial genomes. The architecture of this protein is a signal sequence, a low-complexity region usually rich in Asn and Gln, a well-conserved region with tandem repeats that resemble the tetratricopeptide (TPR) repeat, involved in protein-protein interaction.
Probab=99.02 E-value=6.5e-09 Score=90.26 Aligned_cols=102 Identities=22% Similarity=0.244 Sum_probs=57.0
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC---hHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCCC---HHHHHHHH
Q 003563 35 KMLGEASLQYAYGNFEQAISLLKEVVRLSPNL---PETYNTLGLAHSALGNHKSAFDFYVIAAHLSPKD---SALWKQLL 108 (810)
Q Consensus 35 ~~l~~a~~~~~~g~~~~A~~~~~~~l~~~p~~---~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~p~~---~~~~~~la 108 (810)
.++..|..+...|++++|+..|.+++..+|++ +.+++.+|.++...|++++|+..|+.++...|++ +.++..+|
T Consensus 4 ~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~~~~~~ 83 (119)
T TIGR02795 4 AYYDAALLVLKAGDYADAIQAFQAFLKKYPKSTYAPNAHYWLGEAYYAQGKYADAAKAFLAVVKKYPKSPKAPDALLKLG 83 (119)
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCccccHHHHHHHHHHHHhhccHHHHHHHHHHHHHHCCCCCcccHHHHHHH
Confidence 34555555555666666666666665555543 3455555555555555555555555555555543 34455555
Q ss_pred HHHHHcCCHHHHHHHHHHHHHcCCCCHH
Q 003563 109 TFAVQKGDTAQAMYYIRQAIRAEPKDIS 136 (810)
Q Consensus 109 ~~~~~~g~~~~A~~~~~~al~~~p~~~~ 136 (810)
.++...|++++|+.+++++++..|++..
T Consensus 84 ~~~~~~~~~~~A~~~~~~~~~~~p~~~~ 111 (119)
T TIGR02795 84 MSLQELGDKEKAKATLQQVIKRYPGSSA 111 (119)
T ss_pred HHHHHhCChHHHHHHHHHHHHHCcCChh
Confidence 5555555555555555555555555443
No 138
>PF14938 SNAP: Soluble NSF attachment protein, SNAP; PDB: 1QQE_A 2IFU_A.
Probab=99.01 E-value=3.9e-08 Score=99.12 Aligned_cols=203 Identities=15% Similarity=0.201 Sum_probs=104.2
Q ss_pred HHHHHHcCChHHHHHHHHHHHhcCC--CC----HHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHH
Q 003563 74 GLAHSALGNHKSAFDFYVIAAHLSP--KD----SALWKQLLTFAVQKGDTAQAMYYIRQAIRAEPKDISLRIHLASFYVE 147 (810)
Q Consensus 74 ~~~~~~~g~~~~A~~~~~~a~~~~p--~~----~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~ 147 (810)
|.+|...|++++|...|.++....- ++ ...+...+.++... ++++|+.+|++++. +|..
T Consensus 42 a~~fk~~~~~~~A~~ay~kAa~~~~~~~~~~~Aa~~~~~Aa~~~k~~-~~~~Ai~~~~~A~~--------------~y~~ 106 (282)
T PF14938_consen 42 ANCFKLAKDWEKAAEAYEKAADCYEKLGDKFEAAKAYEEAANCYKKG-DPDEAIECYEKAIE--------------IYRE 106 (282)
T ss_dssp HHHHHHTT-CHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHHT-THHHHHHHHHHHHH--------------HHHH
T ss_pred HHHHHHHhccchhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhh-CHHHHHHHHHHHHH--------------HHHh
Confidence 6677777777777777777654321 11 12233333333333 55555555555543 2223
Q ss_pred cCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHc-CChHHHHHHHHHHHhhCCCCCC----hHHHHHHHHHHHHcCCHH
Q 003563 148 IGDYEKAAESYEQIQKLFPDNVDATKTGAQLFLKC-GQTARSIGILEEYLKVHPSDAD----LSVIDLLVAILMENNAYE 222 (810)
Q Consensus 148 ~g~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~-g~~~~A~~~~~~~l~~~p~~~~----~~~~~~la~~~~~~g~~~ 222 (810)
.|++..|- ..+..+|.+|... |++++|+++|+++.+....... ...+..+|.++...|+|+
T Consensus 107 ~G~~~~aA--------------~~~~~lA~~ye~~~~d~e~Ai~~Y~~A~~~y~~e~~~~~a~~~~~~~A~l~~~l~~y~ 172 (282)
T PF14938_consen 107 AGRFSQAA--------------KCLKELAEIYEEQLGDYEKAIEYYQKAAELYEQEGSPHSAAECLLKAADLYARLGRYE 172 (282)
T ss_dssp CT-HHHHH--------------HHHHHHHHHHCCTT--HHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHHTT-HH
T ss_pred cCcHHHHH--------------HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHCCChhhHHHHHHHHHHHHHHhCCHH
Confidence 33333332 2344556666666 6777777777777665322222 134556777777777777
Q ss_pred HHHHHHHHHHHHhcCCCCCcH---HHHHHHHHHHHhcCCHHHHHHHHHHhhccCCc----hhHhHHHHHHHHHHH--cCC
Q 003563 223 KTLQHIEHAQIVRFSGKELPL---KLKVKAGICYLRLGNMEKAEILFADLQWKNAI----DHADLITEVADTLMS--LGH 293 (810)
Q Consensus 223 ~A~~~~~~~~~~~~~~~~~~~---~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~----~~~~~~~~la~~~~~--~~~ 293 (810)
+|+..|++.....-...-... ..++..+.|++..||...|...+++....+|. ....+...+..++.. ...
T Consensus 173 ~A~~~~e~~~~~~l~~~l~~~~~~~~~l~a~l~~L~~~D~v~A~~~~~~~~~~~~~F~~s~E~~~~~~l~~A~~~~D~e~ 252 (282)
T PF14938_consen 173 EAIEIYEEVAKKCLENNLLKYSAKEYFLKAILCHLAMGDYVAARKALERYCSQDPSFASSREYKFLEDLLEAYEEGDVEA 252 (282)
T ss_dssp HHHHHHHHHHHTCCCHCTTGHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHGTTSTTSTTSHHHHHHHHHHHHHHTT-CCC
T ss_pred HHHHHHHHHHHHhhcccccchhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCCCcHHHHHHHHHHHHHHhCCHHH
Confidence 777777776654211111111 34456667777777777777777776555441 223334444444432 335
Q ss_pred cHHHHHHHHHHH
Q 003563 294 SNSALKYYHFLE 305 (810)
Q Consensus 294 ~~~A~~~~~~~~ 305 (810)
+.+|+.-|+.+.
T Consensus 253 f~~av~~~d~~~ 264 (282)
T PF14938_consen 253 FTEAVAEYDSIS 264 (282)
T ss_dssp HHHHCHHHTTSS
T ss_pred HHHHHHHHcccC
Confidence 566666665443
No 139
>TIGR02795 tol_pal_ybgF tol-pal system protein YbgF. Members of this protein family are the product of one of seven genes regularly clustered in operons to encode the proteins of the tol-pal system, which is critical for maintaining the integrity of the bacterial outer membrane. The gene for this periplasmic protein has been designated orf2 and ybgF. All members of the seed alignment were from unique tol-pal gene regions from completed bacterial genomes. The architecture of this protein is a signal sequence, a low-complexity region usually rich in Asn and Gln, a well-conserved region with tandem repeats that resemble the tetratricopeptide (TPR) repeat, involved in protein-protein interaction.
Probab=99.01 E-value=9.1e-09 Score=89.34 Aligned_cols=104 Identities=23% Similarity=0.239 Sum_probs=69.8
Q ss_pred HHHHHHHHHHHHcCChHHHHHHHHHHHhcCCCC---HHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCC---HHHHHHH
Q 003563 68 ETYNTLGLAHSALGNHKSAFDFYVIAAHLSPKD---SALWKQLLTFAVQKGDTAQAMYYIRQAIRAEPKD---ISLRIHL 141 (810)
Q Consensus 68 ~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~p~~---~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~---~~~~~~l 141 (810)
+.++.+|..+...|++++|+..|.+++...|++ +.+++.+|.++...|++++|+.+|++++..+|++ +.++..+
T Consensus 3 ~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~~~~~ 82 (119)
T TIGR02795 3 EAYYDAALLVLKAGDYADAIQAFQAFLKKYPKSTYAPNAHYWLGEAYYAQGKYADAAKAFLAVVKKYPKSPKAPDALLKL 82 (119)
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCccccHHHHHHHHHHHHhhccHHHHHHHHHHHHHHCCCCCcccHHHHHH
Confidence 456666777777777777777777777666654 4566667777777777777777777777666654 4556666
Q ss_pred HHHHHHcCCHHHHHHHHHHHHHhCCCCHHH
Q 003563 142 ASFYVEIGDYEKAAESYEQIQKLFPDNVDA 171 (810)
Q Consensus 142 a~~~~~~g~~~~A~~~~~~~l~~~p~~~~~ 171 (810)
|.++...|++++|+..+++++...|++..+
T Consensus 83 ~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~ 112 (119)
T TIGR02795 83 GMSLQELGDKEKAKATLQQVIKRYPGSSAA 112 (119)
T ss_pred HHHHHHhCChHHHHHHHHHHHHHCcCChhH
Confidence 777777777777777777777766666543
No 140
>KOG2053 consensus Mitochondrial inheritance and actin cytoskeleton organization protein [Cytoskeleton]
Probab=99.01 E-value=9.4e-06 Score=88.08 Aligned_cols=381 Identities=14% Similarity=0.043 Sum_probs=224.2
Q ss_pred CCCHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCCCHHHHHHH
Q 003563 28 KLSPGVTKMLGEASLQYAYGNFEQAISLLKEVVRLSPNLPETYNTLGLAHSALGNHKSAFDFYVIAAHLSPKDSALWKQL 107 (810)
Q Consensus 28 ~~~~~~~~~l~~a~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~p~~~~~~~~l 107 (810)
+.|...-...-+|..+++.|+.++|..+++..-...+++...+-.+-.||..+|+.++|..+|+++...+|+ .+..+.+
T Consensus 38 k~Pn~~~a~vLkaLsl~r~gk~~ea~~~Le~~~~~~~~D~~tLq~l~~~y~d~~~~d~~~~~Ye~~~~~~P~-eell~~l 116 (932)
T KOG2053|consen 38 KHPNALYAKVLKALSLFRLGKGDEALKLLEALYGLKGTDDLTLQFLQNVYRDLGKLDEAVHLYERANQKYPS-EELLYHL 116 (932)
T ss_pred HCCCcHHHHHHHHHHHHHhcCchhHHHHHhhhccCCCCchHHHHHHHHHHHHHhhhhHHHHHHHHHHhhCCc-HHHHHHH
Confidence 344445555668899999999999998888877777888899999999999999999999999999999999 8888889
Q ss_pred HHHHHHcCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHc-CC---------HHHHHHHHHHHHHhC-CCCH-HHHHHH
Q 003563 108 LTFAVQKGDTAQAMYYIRQAIRAEPKDISLRIHLASFYVEI-GD---------YEKAAESYEQIQKLF-PDNV-DATKTG 175 (810)
Q Consensus 108 a~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~-g~---------~~~A~~~~~~~l~~~-p~~~-~~~~~l 175 (810)
-.+|.+.+.|.+-.+.--+..+..|+++..++....+..+. .. ..-|...+++.++.. +-.. .-....
T Consensus 117 FmayvR~~~yk~qQkaa~~LyK~~pk~~yyfWsV~Slilqs~~~~~~~~~~i~l~LA~~m~~~~l~~~gk~~s~aE~~Ly 196 (932)
T KOG2053|consen 117 FMAYVREKSYKKQQKAALQLYKNFPKRAYYFWSVISLILQSIFSENELLDPILLALAEKMVQKLLEKKGKIESEAEIILY 196 (932)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhCCcccchHHHHHHHHHHhccCCcccccchhHHHHHHHHHHHhccCCccchHHHHHHH
Confidence 99999999988777777777778899887777666555432 22 233455556666554 2211 112233
Q ss_pred HHHHHHcCChHHHHHHHHH-HHhhCCCCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHH------------------h-
Q 003563 176 AQLFLKCGQTARSIGILEE-YLKVHPSDADLSVIDLLVAILMENNAYEKTLQHIEHAQIV------------------R- 235 (810)
Q Consensus 176 a~~~~~~g~~~~A~~~~~~-~l~~~p~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~------------------~- 235 (810)
-.++..+|.+++|.+.+.. ..+..+.... ...+.....+...++|.+-.+...+++.. .
T Consensus 197 l~iL~~~~k~~eal~~l~~~la~~l~~~~~-~l~~~~~dllk~l~~w~~l~~l~~~Ll~k~~Ddy~~~~~sv~klLe~~~ 275 (932)
T KOG2053|consen 197 LLILELQGKYQEALEFLAITLAEKLTSANL-YLENKKLDLLKLLNRWQELFELSSRLLEKGNDDYKIYTDSVFKLLELLN 275 (932)
T ss_pred HHHHHhcccHHHHHHHHHHHHHHhccccch-HHHHHHHHHHHHhcChHHHHHHHHHHHHhCCcchHHHHHHHHHHHHhcc
Confidence 4456677888888888733 2233322221 12223333444444444333333333322 1
Q ss_pred -------------------------cCCCCCcHHHHHHHHHHHHhcCCHHHHHHHHHHhhccCCch-----------hHh
Q 003563 236 -------------------------FSGKELPLKLKVKAGICYLRLGNMEKAEILFADLQWKNAID-----------HAD 279 (810)
Q Consensus 236 -------------------------~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~-----------~~~ 279 (810)
+.....+.-++..+-.-+...|+.+++...|-+-....|-- .+.
T Consensus 276 ~~~a~~~~s~~~~l~~~~ek~~~~i~~~~Rgp~LA~lel~kr~~~~gd~ee~~~~y~~kfg~kpcc~~Dl~~yl~~l~~~ 355 (932)
T KOG2053|consen 276 KEPAEAAHSLSKSLDECIEKAQKNIGSKSRGPYLARLELDKRYKLIGDSEEMLSYYFKKFGDKPCCAIDLNHYLGHLNID 355 (932)
T ss_pred cccchhhhhhhhhHHHHHHHHHHhhcccccCcHHHHHHHHHHhcccCChHHHHHHHHHHhCCCcHhHhhHHHhhccCCHH
Confidence 00011222233333333345677777666655422211100 000
Q ss_pred H------------------------HHHHHHHHHHcCCc-----HHHHHHHHHHHhc---c----------CCCCHHHHH
Q 003563 280 L------------------------ITEVADTLMSLGHS-----NSALKYYHFLETN---A----------GTDNGYLYL 317 (810)
Q Consensus 280 ~------------------------~~~la~~~~~~~~~-----~~A~~~~~~~~~~---~----------~~~~~~~~~ 317 (810)
. +...-.+....|.| +.-..++.++... . .......+.
T Consensus 356 q~~~l~~~l~~~~~~~s~~~k~l~~h~c~l~~~rl~G~~~~l~ad~i~a~~~kl~~~ye~gls~~K~ll~TE~~~g~~~l 435 (932)
T KOG2053|consen 356 QLKSLMSKLVLADDDSSGDEKVLQQHLCVLLLLRLLGLYEKLPADSILAYVRKLKLTYEKGLSLSKDLLPTEYSFGDELL 435 (932)
T ss_pred HHHHHHHHhhccCCcchhhHHHHHHHHHHHHHHHHhhccccCChHHHHHHHHHHHHHHhccccccccccccccccHHHHH
Confidence 0 11111111222221 1112222221110 0 011222222
Q ss_pred H-----HHHHHHHccC---HHHHHHHHHHHHhhcCCCHHHHHHHHHHHHHcCCHHHHHHhcCCCCCCCcccCCCCCCChh
Q 003563 318 K-----LAECYLSLKE---RAHAIMFFYKALDRFEDNIDARLTLASLLLEEAKEEEAITLLSPPKDLDSLDMNSDKSNPW 389 (810)
Q Consensus 318 ~-----la~~~~~~g~---~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~ 389 (810)
. +-..+.+.++ .-+|+-.++..+..+|.|......+..+|.-.|-+..|.+.|...--..-...
T Consensus 436 lLav~~Lid~~rktnd~~~l~eaI~LLE~glt~s~hnf~~KLlLiriY~~lGa~p~a~~~y~tLdIK~IQ~D-------- 507 (932)
T KOG2053|consen 436 LLAVNHLIDLWRKTNDLTDLFEAITLLENGLTKSPHNFQTKLLLIRIYSYLGAFPDAYELYKTLDIKNIQTD-------- 507 (932)
T ss_pred HHHHHHHHHHHHhcCcHHHHHHHHHHHHHHhhcCCccHHHHHHHHHHHHHhcCChhHHHHHHhcchHHhhhc--------
Confidence 2 3345556555 45799999999999999999999999999999999999999874322111110
Q ss_pred hhHHHHHHHHHHHHHhcCCchhHHhhhhhhhhh
Q 003563 390 WLNEKIIMKLCHIYRAKGMPEDFVDAIFPLVCE 422 (810)
Q Consensus 390 ~~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~ 422 (810)
.+-+.+-..+...|++..+...+...++-
T Consensus 508 ----Tlgh~~~~~~~t~g~~~~~s~~~~~~lkf 536 (932)
T KOG2053|consen 508 ----TLGHLIFRRAETSGRSSFASNTFNEHLKF 536 (932)
T ss_pred ----cchHHHHHHHHhcccchhHHHHHHHHHHH
Confidence 12244445556667888777777665543
No 141
>COG4785 NlpI Lipoprotein NlpI, contains TPR repeats [General function prediction only]
Probab=98.99 E-value=2.5e-08 Score=89.07 Aligned_cols=200 Identities=15% Similarity=0.079 Sum_probs=138.0
Q ss_pred ChHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHH
Q 003563 66 LPETYNTLGLAHSALGNHKSAFDFYVIAAHLSPKDSALWKQLLTFAVQKGDTAQAMYYIRQAIRAEPKDISLRIHLASFY 145 (810)
Q Consensus 66 ~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~ 145 (810)
.+..++..|..|-..|-+.-|.-.|.+++.+.|+-++++..+|..+...|+++.|.+.|...++++|.+.-++.+.|..+
T Consensus 64 RA~l~fERGvlYDSlGL~~LAR~DftQaLai~P~m~~vfNyLG~Yl~~a~~fdaa~eaFds~~ELDp~y~Ya~lNRgi~~ 143 (297)
T COG4785 64 RAQLLFERGVLYDSLGLRALARNDFSQALAIRPDMPEVFNYLGIYLTQAGNFDAAYEAFDSVLELDPTYNYAHLNRGIAL 143 (297)
T ss_pred HHHHHHHhcchhhhhhHHHHHhhhhhhhhhcCCCcHHHHHHHHHHHHhcccchHHHHHhhhHhccCCcchHHHhccceee
Confidence 45677888999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCChHHHHHHH-HHHHhhCCCCCChHHHHHHHHHHHHcCCHHHH
Q 003563 146 VEIGDYEKAAESYEQIQKLFPDNVDATKTGAQLFLKCGQTARSIGIL-EEYLKVHPSDADLSVIDLLVAILMENNAYEKT 224 (810)
Q Consensus 146 ~~~g~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~~-~~~l~~~p~~~~~~~~~~la~~~~~~g~~~~A 224 (810)
.--|+++-|.+-+.+-.+.+|++|---..+-..- ..-++.+|...+ +++...+.+.-. | .+...|. |+..+
T Consensus 144 YY~gR~~LAq~d~~~fYQ~D~~DPfR~LWLYl~E-~k~dP~~A~tnL~qR~~~~d~e~WG---~-~iV~~yL--gkiS~- 215 (297)
T COG4785 144 YYGGRYKLAQDDLLAFYQDDPNDPFRSLWLYLNE-QKLDPKQAKTNLKQRAEKSDKEQWG---W-NIVEFYL--GKISE- 215 (297)
T ss_pred eecCchHhhHHHHHHHHhcCCCChHHHHHHHHHH-hhCCHHHHHHHHHHHHHhccHhhhh---H-HHHHHHH--hhccH-
Confidence 9999999999999999999999874333322222 233556665544 444443322221 2 2222222 22211
Q ss_pred HHHHHHHHHHhcCCC----CCcHHHHHHHHHHHHhcCCHHHHHHHHHHhhccCC
Q 003563 225 LQHIEHAQIVRFSGK----ELPLKLKVKAGICYLRLGNMEKAEILFADLQWKNA 274 (810)
Q Consensus 225 ~~~~~~~~~~~~~~~----~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~ 274 (810)
...++++..- ..+. ..-.+.++.+|..+...|+.++|..+|+-++..+.
T Consensus 216 e~l~~~~~a~-a~~n~~~Ae~LTEtyFYL~K~~l~~G~~~~A~~LfKLaiannV 268 (297)
T COG4785 216 ETLMERLKAD-ATDNTSLAEHLTETYFYLGKYYLSLGDLDEATALFKLAVANNV 268 (297)
T ss_pred HHHHHHHHhh-ccchHHHHHHHHHHHHHHHHHHhccccHHHHHHHHHHHHHHhH
Confidence 1122222221 1001 12235566777777777777777777777665443
No 142
>PRK10153 DNA-binding transcriptional activator CadC; Provisional
Probab=98.99 E-value=2.3e-08 Score=107.92 Aligned_cols=120 Identities=9% Similarity=-0.026 Sum_probs=63.3
Q ss_pred HHHHHHHHHHHhcCCCCHHHHHHHHHHHHHc--------CCHHHHHHHHHHHHHc--CCCCHHHHHHHHHHHHHcCCHHH
Q 003563 84 KSAFDFYVIAAHLSPKDSALWKQLLTFAVQK--------GDTAQAMYYIRQAIRA--EPKDISLRIHLASFYVEIGDYEK 153 (810)
Q Consensus 84 ~~A~~~~~~a~~~~p~~~~~~~~la~~~~~~--------g~~~~A~~~~~~al~~--~p~~~~~~~~la~~~~~~g~~~~ 153 (810)
.+|+.+|+++++++|+++.++..++.++... ++...+.....+++.. +|.++.++..+|..+...|++++
T Consensus 359 ~~A~~lle~Ai~ldP~~a~a~A~la~~~~~~~~~~~~~~~~l~~a~~~~~~a~al~~~~~~~~~~~ala~~~~~~g~~~~ 438 (517)
T PRK10153 359 NKASDLLEEILKSEPDFTYAQAEKALADIVRHSQQPLDEKQLAALSTELDNIVALPELNVLPRIYEILAVQALVKGKTDE 438 (517)
T ss_pred HHHHHHHHHHHHhCCCcHHHHHHHHHHHHHHHhcCCccHHHHHHHHHHHHHhhhcccCcCChHHHHHHHHHHHhcCCHHH
Confidence 3444444444444444444444443333221 1223344444444442 44455555556666666666666
Q ss_pred HHHHHHHHHHhCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHhhCCCCCC
Q 003563 154 AAESYEQIQKLFPDNVDATKTGAQLFLKCGQTARSIGILEEYLKVHPSDAD 204 (810)
Q Consensus 154 A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~ 204 (810)
|...+++++.++| +..++..+|.++...|++++|++.|++++.++|.++.
T Consensus 439 A~~~l~rAl~L~p-s~~a~~~lG~~~~~~G~~~eA~~~~~~A~~L~P~~pt 488 (517)
T PRK10153 439 AYQAINKAIDLEM-SWLNYVLLGKVYELKGDNRLAADAYSTAFNLRPGENT 488 (517)
T ss_pred HHHHHHHHHHcCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCch
Confidence 6666666666666 3556666666666666666666666666666666554
No 143
>CHL00033 ycf3 photosystem I assembly protein Ycf3
Probab=98.97 E-value=1.4e-08 Score=94.01 Aligned_cols=107 Identities=18% Similarity=0.189 Sum_probs=83.7
Q ss_pred HHHcCCHHHHHHHHHHHHHhCCCC--hHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCCC---HHHHHHHHHHHHHcCCH
Q 003563 43 QYAYGNFEQAISLLKEVVRLSPNL--PETYNTLGLAHSALGNHKSAFDFYVIAAHLSPKD---SALWKQLLTFAVQKGDT 117 (810)
Q Consensus 43 ~~~~g~~~~A~~~~~~~l~~~p~~--~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~p~~---~~~~~~la~~~~~~g~~ 117 (810)
++-.++|..+...+..+++..+.+ ...++.+|.++...|++++|+..|++++.+.|+. +.++..+|.++...|++
T Consensus 9 ~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~g~~~~~~g~~~~A~~~~~~al~l~~~~~~~~~~~~~lg~~~~~~g~~ 88 (168)
T CHL00033 9 NFIDKTFTIVADILLRILPTTSGEKEAFTYYRDGMSAQSEGEYAEALQNYYEAMRLEIDPYDRSYILYNIGLIHTSNGEH 88 (168)
T ss_pred cccccccccchhhhhHhccCCchhHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhccccchhhHHHHHHHHHHHHHcCCH
Confidence 344555777777776666655554 5667888899988999999999999998876653 45788889999999999
Q ss_pred HHHHHHHHHHHHcCCCCHHHHHHHHHHHHHcC
Q 003563 118 AQAMYYIRQAIRAEPKDISLRIHLASFYVEIG 149 (810)
Q Consensus 118 ~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g 149 (810)
++|+.++++++..+|.....+..+|.++...|
T Consensus 89 ~eA~~~~~~Al~~~~~~~~~~~~la~i~~~~~ 120 (168)
T CHL00033 89 TKALEYYFQALERNPFLPQALNNMAVICHYRG 120 (168)
T ss_pred HHHHHHHHHHHHhCcCcHHHHHHHHHHHHHhh
Confidence 99999999999888888888888888887333
No 144
>KOG1941 consensus Acetylcholine receptor-associated protein of the synapse (rapsyn) [Extracellular structures]
Probab=98.93 E-value=4.5e-07 Score=87.50 Aligned_cols=240 Identities=14% Similarity=0.111 Sum_probs=121.7
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCC-----HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCH------H
Q 003563 102 ALWKQLLTFAVQKGDTAQAMYYIRQAIRAEPKD-----ISLRIHLASFYVEIGDYEKAAESYEQIQKLFPDNV------D 170 (810)
Q Consensus 102 ~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~-----~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~------~ 170 (810)
+++.+++..+....++.+++.+-+..+.+.... ......++..+..++.++++++.|+++++...++. .
T Consensus 84 ea~lnlar~~e~l~~f~kt~~y~k~~l~lpgt~~~~~~gq~~l~~~~Ahlgls~fq~~Lesfe~A~~~A~~~~D~~LElq 163 (518)
T KOG1941|consen 84 EAYLNLARSNEKLCEFHKTISYCKTCLGLPGTRAGQLGGQVSLSMGNAHLGLSVFQKALESFEKALRYAHNNDDAMLELQ 163 (518)
T ss_pred HHHHHHHHHHHHHHHhhhHHHHHHHHhcCCCCCcccccchhhhhHHHHhhhHHHHHHHHHHHHHHHHHhhccCCceeeee
Confidence 344555555555555555555554444432111 12344455555555666666666666655433221 3
Q ss_pred HHHHHHHHHHHcCChHHHHHHHHHHHhhCCCCC--Ch------HHHHHHHHHHHHcCCHHHHHHHHHHHHHHhcC--CCC
Q 003563 171 ATKTGAQLFLKCGQTARSIGILEEYLKVHPSDA--DL------SVIDLLVAILMENNAYEKTLQHIEHAQIVRFS--GKE 240 (810)
Q Consensus 171 ~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~--~~------~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~--~~~ 240 (810)
+...+|.++....++++|.-+..++.++...-. ++ .+++.++..+..+|..-.|.++.+++.++.-. +.+
T Consensus 164 vcv~Lgslf~~l~D~~Kal~f~~kA~~lv~s~~l~d~~~kyr~~~lyhmaValR~~G~LgdA~e~C~Ea~klal~~Gdra 243 (518)
T KOG1941|consen 164 VCVSLGSLFAQLKDYEKALFFPCKAAELVNSYGLKDWSLKYRAMSLYHMAVALRLLGRLGDAMECCEEAMKLALQHGDRA 243 (518)
T ss_pred hhhhHHHHHHHHHhhhHHhhhhHhHHHHHHhcCcCchhHHHHHHHHHHHHHHHHHhcccccHHHHHHHHHHHHHHhCChH
Confidence 455556666666666666655555554422111 11 23444555555666666666666655544211 112
Q ss_pred CcHHHHHHHHHHHHhcCCHHHHHHHHHHhhccCC-----chhHhHHHHHHHHHHHcCCc-----HHHHHHHHHHHhccC-
Q 003563 241 LPLKLKVKAGICYLRLGNMEKAEILFADLQWKNA-----IDHADLITEVADTLMSLGHS-----NSALKYYHFLETNAG- 309 (810)
Q Consensus 241 ~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~-----~~~~~~~~~la~~~~~~~~~-----~~A~~~~~~~~~~~~- 309 (810)
.......-+|.+|...|+.+.|..-|+.+..... -....++...+.++....-. -.|++.-+++++...
T Consensus 244 ~~arc~~~~aDIyR~~gd~e~af~rYe~Am~~m~~~gdrmgqv~al~g~Akc~~~~r~~~k~~~Crale~n~r~levA~~ 323 (518)
T KOG1941|consen 244 LQARCLLCFADIYRSRGDLERAFRRYEQAMGTMASLGDRMGQVEALDGAAKCLETLRLQNKICNCRALEFNTRLLEVASS 323 (518)
T ss_pred HHHHHHHHHHHHHHhcccHhHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHhhcccccchhHHHHHHHHHHHH
Confidence 2223344556666666666666666665532111 01223344444444333222 336666666554421
Q ss_pred ----CCCHHHHHHHHHHHHHccCHHHHHHHHHHHHh
Q 003563 310 ----TDNGYLYLKLAECYLSLKERAHAIMFFYKALD 341 (810)
Q Consensus 310 ----~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~ 341 (810)
......+..++.+|..+|.-++=...+.++-+
T Consensus 324 IG~K~~vlK~hcrla~iYrs~gl~d~~~~h~~ra~~ 359 (518)
T KOG1941|consen 324 IGAKLSVLKLHCRLASIYRSKGLQDELRAHVVRAHE 359 (518)
T ss_pred hhhhHHHHHHHHHHHHHHHhccchhHHHHHHHHHHH
Confidence 12345678889999999887777666666544
No 145
>PRK10153 DNA-binding transcriptional activator CadC; Provisional
Probab=98.93 E-value=5.1e-08 Score=105.35 Aligned_cols=144 Identities=20% Similarity=0.168 Sum_probs=112.5
Q ss_pred CCCCCHHHHHHHHHHHHHHHcCC---HHHHHHHHHHHHHhCCCChHHHHHHHHHHHHcC--------ChHHHHHHHHHHH
Q 003563 26 KNKLSPGVTKMLGEASLQYAYGN---FEQAISLLKEVVRLSPNLPETYNTLGLAHSALG--------NHKSAFDFYVIAA 94 (810)
Q Consensus 26 ~~~~~~~~~~~l~~a~~~~~~g~---~~~A~~~~~~~l~~~p~~~~~~~~l~~~~~~~g--------~~~~A~~~~~~a~ 94 (810)
..+.++++..++-+|..++..++ +..|+.+|+++++.+|+++.++..++.++.... +...+.....+++
T Consensus 332 ~~~~~~~Ay~~~lrg~~~~~~~~~~~~~~A~~lle~Ai~ldP~~a~a~A~la~~~~~~~~~~~~~~~~l~~a~~~~~~a~ 411 (517)
T PRK10153 332 GLPHQGAALTLFYQAHHYLNSGDAKSLNKASDLLEEILKSEPDFTYAQAEKALADIVRHSQQPLDEKQLAALSTELDNIV 411 (517)
T ss_pred cCCCCHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHHHhcCCccHHHHHHHHHHHHHhh
Confidence 33456677777888888876655 778888888888888888888888888775532 2345555566655
Q ss_pred hc--CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHH
Q 003563 95 HL--SPKDSALWKQLLTFAVQKGDTAQAMYYIRQAIRAEPKDISLRIHLASFYVEIGDYEKAAESYEQIQKLFPDNVD 170 (810)
Q Consensus 95 ~~--~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~ 170 (810)
.+ +|.++.++..+|..+...|++++|...+++++.++| +..++..+|.++...|++++|++.|++++.++|.++.
T Consensus 412 al~~~~~~~~~~~ala~~~~~~g~~~~A~~~l~rAl~L~p-s~~a~~~lG~~~~~~G~~~eA~~~~~~A~~L~P~~pt 488 (517)
T PRK10153 412 ALPELNVLPRIYEILAVQALVKGKTDEAYQAINKAIDLEM-SWLNYVLLGKVYELKGDNRLAADAYSTAFNLRPGENT 488 (517)
T ss_pred hcccCcCChHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCch
Confidence 53 667778888888888888888888888888888888 4778888888888888888888888888888888775
No 146
>PRK11906 transcriptional regulator; Provisional
Probab=98.92 E-value=1.2e-07 Score=96.73 Aligned_cols=159 Identities=13% Similarity=0.061 Sum_probs=92.5
Q ss_pred HHHHHHHHHHHcCC---HHHHHHHHHHHH---HhCCCChHHHHHHHHHHHHc---------CChHHHHHHHHHHHhcCCC
Q 003563 35 KMLGEASLQYAYGN---FEQAISLLKEVV---RLSPNLPETYNTLGLAHSAL---------GNHKSAFDFYVIAAHLSPK 99 (810)
Q Consensus 35 ~~l~~a~~~~~~g~---~~~A~~~~~~~l---~~~p~~~~~~~~l~~~~~~~---------g~~~~A~~~~~~a~~~~p~ 99 (810)
.++.+|...+..+. .+.|+.+|.+++ ..+|+.+.+|..++.|+... .+..+|....++|++++|.
T Consensus 257 d~ylrg~~~~~~~t~~~~~~Al~lf~ra~~~~~ldp~~a~a~~~lA~~h~~~~~~g~~~~~~~~~~a~~~A~rAveld~~ 336 (458)
T PRK11906 257 DEMLAGKKELYDFTPESIYRAMTIFDRLQNKSDIQTLKTECYCLLAECHMSLALHGKSELELAAQKALELLDYVSDITTV 336 (458)
T ss_pred HHHHHHHHHhhccCHHHHHHHHHHHHHHhhcccCCcccHHHHHHHHHHHHHHHHhcCCCchHHHHHHHHHHHHHHhcCCC
Confidence 44555655544443 446666777777 67777777777777776543 1233555566666666666
Q ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHH-
Q 003563 100 DSALWKQLLTFAVQKGDTAQAMYYIRQAIRAEPKDISLRIHLASFYVEIGDYEKAAESYEQIQKLFPDNVDATKTGAQL- 178 (810)
Q Consensus 100 ~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~la~~- 178 (810)
|+.++..+|.+....++++.|...|++++.++|+.+.+++..|.+....|+.++|.+.++++++++|....+-...-.+
T Consensus 337 Da~a~~~~g~~~~~~~~~~~a~~~f~rA~~L~Pn~A~~~~~~~~~~~~~G~~~~a~~~i~~alrLsP~~~~~~~~~~~~~ 416 (458)
T PRK11906 337 DGKILAIMGLITGLSGQAKVSHILFEQAKIHSTDIASLYYYRALVHFHNEKIEEARICIDKSLQLEPRRRKAVVIKECVD 416 (458)
T ss_pred CHHHHHHHHHHHHhhcchhhHHHHHHHHhhcCCccHHHHHHHHHHHHHcCCHHHHHHHHHHHhccCchhhHHHHHHHHHH
Confidence 6666666666666666666666666666666666666666666666666666666666666666666543332222222
Q ss_pred HHHcCChHHHHHHHH
Q 003563 179 FLKCGQTARSIGILE 193 (810)
Q Consensus 179 ~~~~g~~~~A~~~~~ 193 (810)
.+-....++|+..|-
T Consensus 417 ~~~~~~~~~~~~~~~ 431 (458)
T PRK11906 417 MYVPNPLKNNIKLYY 431 (458)
T ss_pred HHcCCchhhhHHHHh
Confidence 222334455555443
No 147
>PRK02603 photosystem I assembly protein Ycf3; Provisional
Probab=98.92 E-value=4.9e-08 Score=90.58 Aligned_cols=118 Identities=19% Similarity=0.266 Sum_probs=93.6
Q ss_pred CChHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCCC---HHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHHHHHHH
Q 003563 65 NLPETYNTLGLAHSALGNHKSAFDFYVIAAHLSPKD---SALWKQLLTFAVQKGDTAQAMYYIRQAIRAEPKDISLRIHL 141 (810)
Q Consensus 65 ~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~p~~---~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l 141 (810)
..+.+++.+|..+...|++++|+.+|++++...|+. ..++..+|.++...|++++|+.++++++...|.+..++..+
T Consensus 33 ~~a~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l 112 (172)
T PRK02603 33 KEAFVYYRDGMSAQADGEYAEALENYEEALKLEEDPNDRSYILYNMGIIYASNGEHDKALEYYHQALELNPKQPSALNNI 112 (172)
T ss_pred hhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhhccchHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcccHHHHHHH
Confidence 456678888999988999999999999988876653 46788889999999999999999999999888888888888
Q ss_pred HHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHhhCCCC
Q 003563 142 ASFYVEIGDYEKAAESYEQIQKLFPDNVDATKTGAQLFLKCGQTARSIGILEEYLKVHPSD 202 (810)
Q Consensus 142 a~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~ 202 (810)
|.++...|+...+...++.++. .+++|++.+++++..+|++
T Consensus 113 g~~~~~~g~~~~a~~~~~~A~~--------------------~~~~A~~~~~~a~~~~p~~ 153 (172)
T PRK02603 113 AVIYHKRGEKAEEAGDQDEAEA--------------------LFDKAAEYWKQAIRLAPNN 153 (172)
T ss_pred HHHHHHcCChHhHhhCHHHHHH--------------------HHHHHHHHHHHHHhhCchh
Confidence 8888888887666655555432 2566777777777777765
No 148
>COG4785 NlpI Lipoprotein NlpI, contains TPR repeats [General function prediction only]
Probab=98.92 E-value=1.7e-07 Score=83.77 Aligned_cols=195 Identities=15% Similarity=0.118 Sum_probs=139.9
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHH
Q 003563 102 ALWKQLLTFAVQKGDTAQAMYYIRQAIRAEPKDISLRIHLASFYVEIGDYEKAAESYEQIQKLFPDNVDATKTGAQLFLK 181 (810)
Q Consensus 102 ~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~ 181 (810)
..++..|..|-..|-+.-|..-|.+++.+.|+-++++..+|..+...|+++.|.+.|...++++|...-+..+.|..+.-
T Consensus 66 ~l~fERGvlYDSlGL~~LAR~DftQaLai~P~m~~vfNyLG~Yl~~a~~fdaa~eaFds~~ELDp~y~Ya~lNRgi~~YY 145 (297)
T COG4785 66 QLLFERGVLYDSLGLRALARNDFSQALAIRPDMPEVFNYLGIYLTQAGNFDAAYEAFDSVLELDPTYNYAHLNRGIALYY 145 (297)
T ss_pred HHHHHhcchhhhhhHHHHHhhhhhhhhhcCCCcHHHHHHHHHHHHhcccchHHHHHhhhHhccCCcchHHHhccceeeee
Confidence 34566688888889999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cCChHHHHHHHHHHHhhCCCCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhcCCCCCcHHHHHHHHHHHHhcCCHHH
Q 003563 182 CGQTARSIGILEEYLKVHPSDADLSVIDLLVAILMENNAYEKTLQHIEHAQIVRFSGKELPLKLKVKAGICYLRLGNMEK 261 (810)
Q Consensus 182 ~g~~~~A~~~~~~~l~~~p~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~ 261 (810)
-|++.-|.+.+.+..+.+|+++--..|..+.+ ..-++.+|...+.+-.+. ......-+ .+. -+.+|+..+
T Consensus 146 ~gR~~LAq~d~~~fYQ~D~~DPfR~LWLYl~E---~k~dP~~A~tnL~qR~~~----~d~e~WG~-~iV--~~yLgkiS~ 215 (297)
T COG4785 146 GGRYKLAQDDLLAFYQDDPNDPFRSLWLYLNE---QKLDPKQAKTNLKQRAEK----SDKEQWGW-NIV--EFYLGKISE 215 (297)
T ss_pred cCchHhhHHHHHHHHhcCCCChHHHHHHHHHH---hhCCHHHHHHHHHHHHHh----ccHhhhhH-HHH--HHHHhhccH
Confidence 99999999999999999999985333333332 345777787766544332 11111111 111 222233211
Q ss_pred HHHHHHHhhcc--CC----chhHhHHHHHHHHHHHcCCcHHHHHHHHHHHhc
Q 003563 262 AEILFADLQWK--NA----IDHADLITEVADTLMSLGHSNSALKYYHFLETN 307 (810)
Q Consensus 262 A~~~~~~~~~~--~~----~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~ 307 (810)
...++++... +. ..-.+.++.+|..+...|+.++|...|+-++..
T Consensus 216 -e~l~~~~~a~a~~n~~~Ae~LTEtyFYL~K~~l~~G~~~~A~~LfKLaian 266 (297)
T COG4785 216 -ETLMERLKADATDNTSLAEHLTETYFYLGKYYLSLGDLDEATALFKLAVAN 266 (297)
T ss_pred -HHHHHHHHhhccchHHHHHHHHHHHHHHHHHHhccccHHHHHHHHHHHHHH
Confidence 1122222111 11 113456778888888888888888888777654
No 149
>PF13414 TPR_11: TPR repeat; PDB: 2HO1_B 2FI7_B 2DBA_A 3Q4A_B 2C2L_D 3Q47_B 3Q49_B 2PL2_B 3IEG_B 2FBN_A ....
Probab=98.92 E-value=4.7e-09 Score=80.47 Aligned_cols=66 Identities=21% Similarity=0.376 Sum_probs=29.8
Q ss_pred hHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcC-CHHHHHHHHHHHHHcCC
Q 003563 67 PETYNTLGLAHSALGNHKSAFDFYVIAAHLSPKDSALWKQLLTFAVQKG-DTAQAMYYIRQAIRAEP 132 (810)
Q Consensus 67 ~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~p~~~~~~~~la~~~~~~g-~~~~A~~~~~~al~~~p 132 (810)
+..|..+|.++...|++++|+..|.++++.+|+++.+|+.+|.++..+| ++++|+..++++++++|
T Consensus 3 a~~~~~~g~~~~~~~~~~~A~~~~~~ai~~~p~~~~~~~~~g~~~~~~~~~~~~A~~~~~~al~l~P 69 (69)
T PF13414_consen 3 AEAWYNLGQIYFQQGDYEEAIEYFEKAIELDPNNAEAYYNLGLAYMKLGKDYEEAIEDFEKALKLDP 69 (69)
T ss_dssp HHHHHHHHHHHHHTTHHHHHHHHHHHHHHHSTTHHHHHHHHHHHHHHTTTHHHHHHHHHHHHHHHST
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHhCccHHHHHHHHHHHHHcCc
Confidence 3344444444444444444444444444444444444444444444444 34444444444444443
No 150
>cd00189 TPR Tetratricopeptide repeat domain; typically contains 34 amino acids [WLF]-X(2)-[LIM]-[GAS]-X(2)-[YLF]-X(8)-[ASE]-X(3)-[FYL]-X(2)-[ASL]-X(4)-[PKE] is the consensus sequence; found in a variety of organisms including bacteria, cyanobacteria, yeast, fungi, plants, and humans in various subcellular locations; involved in a variety of functions including protein-protein interactions, but common features in the interaction partners have not been defined; involved in chaperone, cell-cycle, transciption, and protein transport complexes; the number of TPR motifs varies among proteins (1,3-11,13 15,16,19); 5-6 tandem repeats generate a right-handed helical structure with an amphipathic channel that is thought to accomodate an alpha-helix of a target protein; it has been proposed that TPR proteins preferably interact with WD-40 repeat proteins, but in many instances several TPR-proteins seem to aggregate to multi-protein complexes; examples of TPR-proteins include, Cdc16p, Cdc23p and C
Probab=98.91 E-value=1.6e-08 Score=83.87 Aligned_cols=94 Identities=26% Similarity=0.415 Sum_probs=41.4
Q ss_pred HHHHHHHHHcCChHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHcCC
Q 003563 71 NTLGLAHSALGNHKSAFDFYVIAAHLSPKDSALWKQLLTFAVQKGDTAQAMYYIRQAIRAEPKDISLRIHLASFYVEIGD 150 (810)
Q Consensus 71 ~~l~~~~~~~g~~~~A~~~~~~a~~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~ 150 (810)
+.+|.++...|++++|+..+.+++...|.+..++..+|.++...|++++|+.++++++...|.+..++..+|.++...|+
T Consensus 4 ~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 83 (100)
T cd00189 4 LNLGNLYYKLGDYDEALEYYEKALELDPDNADAYYNLAAAYYKLGKYEEALEDYEKALELDPDNAKAYYNLGLAYYKLGK 83 (100)
T ss_pred HHHHHHHHHHhcHHHHHHHHHHHHhcCCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCcchhHHHHHHHHHHHHHh
Confidence 33444444444444444444444444444444444444444444444444444444444444444444444444444444
Q ss_pred HHHHHHHHHHHHHh
Q 003563 151 YEKAAESYEQIQKL 164 (810)
Q Consensus 151 ~~~A~~~~~~~l~~ 164 (810)
+++|...+.+++..
T Consensus 84 ~~~a~~~~~~~~~~ 97 (100)
T cd00189 84 YEEALEAYEKALEL 97 (100)
T ss_pred HHHHHHHHHHHHcc
Confidence 44444444444433
No 151
>PRK15331 chaperone protein SicA; Provisional
Probab=98.91 E-value=2.5e-08 Score=86.88 Aligned_cols=102 Identities=11% Similarity=0.060 Sum_probs=80.2
Q ss_pred hCCCChHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHHHHHHH
Q 003563 62 LSPNLPETYNTLGLAHSALGNHKSAFDFYVIAAHLSPKDSALWKQLLTFAVQKGDTAQAMYYIRQAIRAEPKDISLRIHL 141 (810)
Q Consensus 62 ~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l 141 (810)
+.++.-+..+..|.-++..|++++|..+|+-....+|.+++.|..||.++..+++|++|+.+|..+..++++++...+..
T Consensus 32 is~~~le~iY~~Ay~~y~~Gk~~eA~~~F~~L~~~d~~n~~Y~~GLaa~~Q~~k~y~~Ai~~Y~~A~~l~~~dp~p~f~a 111 (165)
T PRK15331 32 IPQDMMDGLYAHAYEFYNQGRLDEAETFFRFLCIYDFYNPDYTMGLAAVCQLKKQFQKACDLYAVAFTLLKNDYRPVFFT 111 (165)
T ss_pred CCHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCcCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccCCCCccchH
Confidence 34445566777777778888888888888877777888888888888888888888888888888887778888888888
Q ss_pred HHHHHHcCCHHHHHHHHHHHHH
Q 003563 142 ASFYVEIGDYEKAAESYEQIQK 163 (810)
Q Consensus 142 a~~~~~~g~~~~A~~~~~~~l~ 163 (810)
|.|+..+|+.+.|+.+|+.++.
T Consensus 112 gqC~l~l~~~~~A~~~f~~a~~ 133 (165)
T PRK15331 112 GQCQLLMRKAAKARQCFELVNE 133 (165)
T ss_pred HHHHHHhCCHHHHHHHHHHHHh
Confidence 8888888888888888887777
No 152
>PF13414 TPR_11: TPR repeat; PDB: 2HO1_B 2FI7_B 2DBA_A 3Q4A_B 2C2L_D 3Q47_B 3Q49_B 2PL2_B 3IEG_B 2FBN_A ....
Probab=98.89 E-value=7.6e-09 Score=79.32 Aligned_cols=67 Identities=33% Similarity=0.591 Sum_probs=49.5
Q ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHcC-CHHHHHHHHHHHHHhCC
Q 003563 100 DSALWKQLLTFAVQKGDTAQAMYYIRQAIRAEPKDISLRIHLASFYVEIG-DYEKAAESYEQIQKLFP 166 (810)
Q Consensus 100 ~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g-~~~~A~~~~~~~l~~~p 166 (810)
++..|..+|.++...|++++|+.+|+++++.+|+++.+++.+|.++..+| ++++|++.++++++++|
T Consensus 2 ~a~~~~~~g~~~~~~~~~~~A~~~~~~ai~~~p~~~~~~~~~g~~~~~~~~~~~~A~~~~~~al~l~P 69 (69)
T PF13414_consen 2 NAEAWYNLGQIYFQQGDYEEAIEYFEKAIELDPNNAEAYYNLGLAYMKLGKDYEEAIEDFEKALKLDP 69 (69)
T ss_dssp SHHHHHHHHHHHHHTTHHHHHHHHHHHHHHHSTTHHHHHHHHHHHHHHTTTHHHHHHHHHHHHHHHST
T ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHhCccHHHHHHHHHHHHHcCc
Confidence 45667777777777777777777777777777777777777777777777 57777777777777766
No 153
>PF14938 SNAP: Soluble NSF attachment protein, SNAP; PDB: 1QQE_A 2IFU_A.
Probab=98.89 E-value=1.9e-07 Score=94.21 Aligned_cols=202 Identities=15% Similarity=0.076 Sum_probs=123.7
Q ss_pred HHHHHHcCChHHHHHHHHHHHhhCCCCCC----hHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhcCCCC--CcHHHHHHH
Q 003563 176 AQLFLKCGQTARSIGILEEYLKVHPSDAD----LSVIDLLVAILMENNAYEKTLQHIEHAQIVRFSGKE--LPLKLKVKA 249 (810)
Q Consensus 176 a~~~~~~g~~~~A~~~~~~~l~~~p~~~~----~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~--~~~~~~~~l 249 (810)
|..|...|++++|...|.++....-...+ ...+...+.++... ++++|+.++++++..+...+. .....+..+
T Consensus 42 a~~fk~~~~~~~A~~ay~kAa~~~~~~~~~~~Aa~~~~~Aa~~~k~~-~~~~Ai~~~~~A~~~y~~~G~~~~aA~~~~~l 120 (282)
T PF14938_consen 42 ANCFKLAKDWEKAAEAYEKAADCYEKLGDKFEAAKAYEEAANCYKKG-DPDEAIECYEKAIEIYREAGRFSQAAKCLKEL 120 (282)
T ss_dssp HHHHHHTT-CHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHHT-THHHHHHHHHHHHHHHHHCT-HHHHHHHHHHH
T ss_pred HHHHHHHhccchhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhh-CHHHHHHHHHHHHHHHHhcCcHHHHHHHHHHH
Confidence 44444555555555555554433211111 12333444444433 777777777777766532222 123456677
Q ss_pred HHHHHhc-CCHHHHHHHHHHhhccC-----CchhHhHHHHHHHHHHHcCCcHHHHHHHHHHHhccC--CC----CHHHHH
Q 003563 250 GICYLRL-GNMEKAEILFADLQWKN-----AIDHADLITEVADTLMSLGHSNSALKYYHFLETNAG--TD----NGYLYL 317 (810)
Q Consensus 250 a~~~~~~-g~~~~A~~~~~~~~~~~-----~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~--~~----~~~~~~ 317 (810)
|.++... |++++|+.+|+++.... +......+..+|.++...|+|++|++.|+++..... +. ....++
T Consensus 121 A~~ye~~~~d~e~Ai~~Y~~A~~~y~~e~~~~~a~~~~~~~A~l~~~l~~y~~A~~~~e~~~~~~l~~~l~~~~~~~~~l 200 (282)
T PF14938_consen 121 AEIYEEQLGDYEKAIEYYQKAAELYEQEGSPHSAAECLLKAADLYARLGRYEEAIEIYEEVAKKCLENNLLKYSAKEYFL 200 (282)
T ss_dssp HHHHCCTT--HHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHTCCCHCTTGHHHHHHHH
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHHHHHCCChhhHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHhhcccccchhHHHHHH
Confidence 7777777 78888888888875421 222456678899999999999999999998876421 11 123567
Q ss_pred HHHHHHHHccCHHHHHHHHHHHHhhcCCC---HH--HHHHHHHHHHH--cCCHHHHHHhcCCCCCCCc
Q 003563 318 KLAECYLSLKERAHAIMFFYKALDRFEDN---ID--ARLTLASLLLE--EAKEEEAITLLSPPKDLDS 378 (810)
Q Consensus 318 ~la~~~~~~g~~~~A~~~~~~al~~~p~~---~~--~~~~la~~~~~--~g~~~~A~~~~~~a~~~~~ 378 (810)
..+.|+...||+..|...+++....+|.. .+ ....|...+.. ...+++|+.-|.+...+++
T Consensus 201 ~a~l~~L~~~D~v~A~~~~~~~~~~~~~F~~s~E~~~~~~l~~A~~~~D~e~f~~av~~~d~~~~ld~ 268 (282)
T PF14938_consen 201 KAILCHLAMGDYVAARKALERYCSQDPSFASSREYKFLEDLLEAYEEGDVEAFTEAVAEYDSISRLDN 268 (282)
T ss_dssp HHHHHHHHTT-HHHHHHHHHHHGTTSTTSTTSHHHHHHHHHHHHHHTT-CCCHHHHCHHHTTSS---H
T ss_pred HHHHHHHHcCCHHHHHHHHHHHHhhCCCCCCcHHHHHHHHHHHHHHhCCHHHHHHHHHHHcccCccHH
Confidence 78889999999999999999999998854 23 33445555543 3458899999998888877
No 154
>PRK15331 chaperone protein SicA; Provisional
Probab=98.89 E-value=3.5e-08 Score=85.96 Aligned_cols=106 Identities=15% Similarity=0.078 Sum_probs=99.2
Q ss_pred CHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCCCHHHHHHHHH
Q 003563 30 SPGVTKMLGEASLQYAYGNFEQAISLLKEVVRLSPNLPETYNTLGLAHSALGNHKSAFDFYVIAAHLSPKDSALWKQLLT 109 (810)
Q Consensus 30 ~~~~~~~l~~a~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~p~~~~~~~~la~ 109 (810)
+......+..|..++..|++++|...|+-....+|.+++.|..||.|+..++++++|+..|..+..++++++...+..|.
T Consensus 34 ~~~le~iY~~Ay~~y~~Gk~~eA~~~F~~L~~~d~~n~~Y~~GLaa~~Q~~k~y~~Ai~~Y~~A~~l~~~dp~p~f~agq 113 (165)
T PRK15331 34 QDMMDGLYAHAYEFYNQGRLDEAETFFRFLCIYDFYNPDYTMGLAAVCQLKKQFQKACDLYAVAFTLLKNDYRPVFFTGQ 113 (165)
T ss_pred HHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCcCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccCCCCccchHHH
Confidence 34677889999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHcCCHHHHHHHHHHHHHcCCCCHH
Q 003563 110 FAVQKGDTAQAMYYIRQAIRAEPKDIS 136 (810)
Q Consensus 110 ~~~~~g~~~~A~~~~~~al~~~p~~~~ 136 (810)
|++.+|+.+.|..+|..++. .|.+..
T Consensus 114 C~l~l~~~~~A~~~f~~a~~-~~~~~~ 139 (165)
T PRK15331 114 CQLLMRKAAKARQCFELVNE-RTEDES 139 (165)
T ss_pred HHHHhCCHHHHHHHHHHHHh-CcchHH
Confidence 99999999999999999998 455443
No 155
>PRK11906 transcriptional regulator; Provisional
Probab=98.88 E-value=2.7e-07 Score=94.05 Aligned_cols=172 Identities=12% Similarity=0.044 Sum_probs=140.8
Q ss_pred HHHhCCCCh---HHH----HHHHHHHHHcCC---hHHHHHHHHHHH---hcCCCCHHHHHHHHHHHHHc---------CC
Q 003563 59 VVRLSPNLP---ETY----NTLGLAHSALGN---HKSAFDFYVIAA---HLSPKDSALWKQLLTFAVQK---------GD 116 (810)
Q Consensus 59 ~l~~~p~~~---~~~----~~l~~~~~~~g~---~~~A~~~~~~a~---~~~p~~~~~~~~la~~~~~~---------g~ 116 (810)
+.+..|.+. ++| +..|......+. .+.|+..|.+++ .++|....++..++.++... ..
T Consensus 240 ~~r~~~~~l~~~~a~~~d~ylrg~~~~~~~t~~~~~~Al~lf~ra~~~~~ldp~~a~a~~~lA~~h~~~~~~g~~~~~~~ 319 (458)
T PRK11906 240 SVRLAKQDQGYKNHYLSDEMLAGKKELYDFTPESIYRAMTIFDRLQNKSDIQTLKTECYCLLAECHMSLALHGKSELELA 319 (458)
T ss_pred hhcCCCCCcccccchhhHHHHHHHHHhhccCHHHHHHHHHHHHHHhhcccCCcccHHHHHHHHHHHHHHHHhcCCCchHH
Confidence 344446655 555 677777766554 457899999999 99999999999999998754 24
Q ss_pred HHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHH
Q 003563 117 TAQAMYYIRQAIRAEPKDISLRIHLASFYVEIGDYEKAAESYEQIQKLFPDNVDATKTGAQLFLKCGQTARSIGILEEYL 196 (810)
Q Consensus 117 ~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~l 196 (810)
..+|....+++++++|.|+.++..+|.+....++++.|...|++++.++|+.+.+++..|.+....|+.++|.+.+++++
T Consensus 320 ~~~a~~~A~rAveld~~Da~a~~~~g~~~~~~~~~~~a~~~f~rA~~L~Pn~A~~~~~~~~~~~~~G~~~~a~~~i~~al 399 (458)
T PRK11906 320 AQKALELLDYVSDITTVDGKILAIMGLITGLSGQAKVSHILFEQAKIHSTDIASLYYYRALVHFHNEKIEEARICIDKSL 399 (458)
T ss_pred HHHHHHHHHHHHhcCCCCHHHHHHHHHHHHhhcchhhHHHHHHHHhhcCCccHHHHHHHHHHHHHcCCHHHHHHHHHHHh
Confidence 56889999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hhCCCCCChHHHHHHHHHHHHcCCHHHHHHHHHHH
Q 003563 197 KVHPSDADLSVIDLLVAILMENNAYEKTLQHIEHA 231 (810)
Q Consensus 197 ~~~p~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~ 231 (810)
+++|......+.......|. ....++|+..|-+-
T Consensus 400 rLsP~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~ 433 (458)
T PRK11906 400 QLEPRRRKAVVIKECVDMYV-PNPLKNNIKLYYKE 433 (458)
T ss_pred ccCchhhHHHHHHHHHHHHc-CCchhhhHHHHhhc
Confidence 99998776433333333444 44567777776553
No 156
>PF13432 TPR_16: Tetratricopeptide repeat; PDB: 3CVP_A 3CVL_A 3CVQ_A 3CV0_A 2GW1_B 3CVN_A 3QKY_A 2PL2_B.
Probab=98.88 E-value=6.6e-09 Score=78.47 Aligned_cols=64 Identities=25% Similarity=0.485 Sum_probs=40.3
Q ss_pred HHHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCCCH
Q 003563 38 GEASLQYAYGNFEQAISLLKEVVRLSPNLPETYNTLGLAHSALGNHKSAFDFYVIAAHLSPKDS 101 (810)
Q Consensus 38 ~~a~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~p~~~ 101 (810)
.+|..++..|++++|+..|+++++.+|+++.+++.+|.++..+|++++|+..|+++++.+|+++
T Consensus 2 ~~a~~~~~~g~~~~A~~~~~~~l~~~P~~~~a~~~lg~~~~~~g~~~~A~~~~~~a~~~~P~~p 65 (65)
T PF13432_consen 2 ALARALYQQGDYDEAIAAFEQALKQDPDNPEAWYLLGRILYQQGRYDEALAYYERALELDPDNP 65 (65)
T ss_dssp HHHHHHHHCTHHHHHHHHHHHHHCCSTTHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHHSTT-H
T ss_pred hHHHHHHHcCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCcCCC
Confidence 4556666666666666666666666666666666666666666666666666666666666553
No 157
>PF12895 Apc3: Anaphase-promoting complex, cyclosome, subunit 3; PDB: 3KAE_D 3Q4A_B 2C2L_D 3Q47_B 3Q49_B 2XPI_A 3ULQ_A.
Probab=98.87 E-value=5.5e-09 Score=83.57 Aligned_cols=81 Identities=20% Similarity=0.308 Sum_probs=52.7
Q ss_pred cCCHHHHHHHHHHHHHhCCC--ChHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCHHHHHHH
Q 003563 46 YGNFEQAISLLKEVVRLSPN--LPETYNTLGLAHSALGNHKSAFDFYVIAAHLSPKDSALWKQLLTFAVQKGDTAQAMYY 123 (810)
Q Consensus 46 ~g~~~~A~~~~~~~l~~~p~--~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~p~~~~~~~~la~~~~~~g~~~~A~~~ 123 (810)
.|+|+.|+..+++++..+|. +...++.+|.|++..|++++|+..+++ ...+|.+...++.+|.++..+|++++|+.+
T Consensus 2 ~~~y~~Ai~~~~k~~~~~~~~~~~~~~~~la~~~~~~~~y~~A~~~~~~-~~~~~~~~~~~~l~a~~~~~l~~y~eAi~~ 80 (84)
T PF12895_consen 2 QGNYENAIKYYEKLLELDPTNPNSAYLYNLAQCYFQQGKYEEAIELLQK-LKLDPSNPDIHYLLARCLLKLGKYEEAIKA 80 (84)
T ss_dssp TT-HHHHHHHHHHHHHHHCGTHHHHHHHHHHHHHHHTTHHHHHHHHHHC-HTHHHCHHHHHHHHHHHHHHTT-HHHHHHH
T ss_pred CccHHHHHHHHHHHHHHCCCChhHHHHHHHHHHHHHCCCHHHHHHHHHH-hCCCCCCHHHHHHHHHHHHHhCCHHHHHHH
Confidence 46677777777777776664 344556667777777777777777766 556666666666667777777777777776
Q ss_pred HHHH
Q 003563 124 IRQA 127 (810)
Q Consensus 124 ~~~a 127 (810)
++++
T Consensus 81 l~~~ 84 (84)
T PF12895_consen 81 LEKA 84 (84)
T ss_dssp HHHH
T ss_pred HhcC
Confidence 6653
No 158
>cd00189 TPR Tetratricopeptide repeat domain; typically contains 34 amino acids [WLF]-X(2)-[LIM]-[GAS]-X(2)-[YLF]-X(8)-[ASE]-X(3)-[FYL]-X(2)-[ASL]-X(4)-[PKE] is the consensus sequence; found in a variety of organisms including bacteria, cyanobacteria, yeast, fungi, plants, and humans in various subcellular locations; involved in a variety of functions including protein-protein interactions, but common features in the interaction partners have not been defined; involved in chaperone, cell-cycle, transciption, and protein transport complexes; the number of TPR motifs varies among proteins (1,3-11,13 15,16,19); 5-6 tandem repeats generate a right-handed helical structure with an amphipathic channel that is thought to accomodate an alpha-helix of a target protein; it has been proposed that TPR proteins preferably interact with WD-40 repeat proteins, but in many instances several TPR-proteins seem to aggregate to multi-protein complexes; examples of TPR-proteins include, Cdc16p, Cdc23p and C
Probab=98.87 E-value=2.7e-08 Score=82.46 Aligned_cols=99 Identities=22% Similarity=0.399 Sum_probs=93.7
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHc
Q 003563 35 KMLGEASLQYAYGNFEQAISLLKEVVRLSPNLPETYNTLGLAHSALGNHKSAFDFYVIAAHLSPKDSALWKQLLTFAVQK 114 (810)
Q Consensus 35 ~~l~~a~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~p~~~~~~~~la~~~~~~ 114 (810)
.++..|..++..|++++|+..++++++..|.++.++..+|.++...|++++|+..+.+++...|.+...+..+|.++...
T Consensus 2 ~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 81 (100)
T cd00189 2 ALLNLGNLYYKLGDYDEALEYYEKALELDPDNADAYYNLAAAYYKLGKYEEALEDYEKALELDPDNAKAYYNLGLAYYKL 81 (100)
T ss_pred HHHHHHHHHHHHhcHHHHHHHHHHHHhcCCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCcchhHHHHHHHHHHHH
Confidence 35678899999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCHHHHHHHHHHHHHcCCC
Q 003563 115 GDTAQAMYYIRQAIRAEPK 133 (810)
Q Consensus 115 g~~~~A~~~~~~al~~~p~ 133 (810)
|++++|...+.++++..|.
T Consensus 82 ~~~~~a~~~~~~~~~~~~~ 100 (100)
T cd00189 82 GKYEEALEAYEKALELDPN 100 (100)
T ss_pred HhHHHHHHHHHHHHccCCC
Confidence 9999999999999988773
No 159
>COG4105 ComL DNA uptake lipoprotein [General function prediction only]
Probab=98.87 E-value=1e-06 Score=82.67 Aligned_cols=104 Identities=14% Similarity=0.136 Sum_probs=84.2
Q ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC---hHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCCCHH---HHH
Q 003563 32 GVTKMLGEASLQYAYGNFEQAISLLKEVVRLSPNL---PETYNTLGLAHSALGNHKSAFDFYVIAAHLSPKDSA---LWK 105 (810)
Q Consensus 32 ~~~~~l~~a~~~~~~g~~~~A~~~~~~~l~~~p~~---~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~p~~~~---~~~ 105 (810)
.+..++.+|...+..|+|++|+..|+.+...+|.. ..+...++.++++.+++++|+...++-+.+.|.++. +++
T Consensus 33 p~~~LY~~g~~~L~~gn~~~A~~~fe~l~~~~p~s~~~~qa~l~l~yA~Yk~~~y~~A~~~~drFi~lyP~~~n~dY~~Y 112 (254)
T COG4105 33 PASELYNEGLTELQKGNYEEAIKYFEALDSRHPFSPYSEQAQLDLAYAYYKNGEYDLALAYIDRFIRLYPTHPNADYAYY 112 (254)
T ss_pred CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCcccHHHHHHHHHHHHhcccHHHHHHHHHHHHHhCCCCCChhHHHH
Confidence 35688999999999999999999999999998874 578899999999999999999999999999987754 455
Q ss_pred HHHHHHHHc--------CCHHHHHHHHHHHHHcCCCCH
Q 003563 106 QLLTFAVQK--------GDTAQAMYYIRQAIRAEPKDI 135 (810)
Q Consensus 106 ~la~~~~~~--------g~~~~A~~~~~~al~~~p~~~ 135 (810)
..|.+++.. .-..+|+..|+..+...|+..
T Consensus 113 lkgLs~~~~i~~~~rDq~~~~~A~~~f~~~i~ryPnS~ 150 (254)
T COG4105 113 LKGLSYFFQIDDVTRDQSAARAAFAAFKELVQRYPNSR 150 (254)
T ss_pred HHHHHHhccCCccccCHHHHHHHHHHHHHHHHHCCCCc
Confidence 666665433 123467777777777777653
No 160
>COG3898 Uncharacterized membrane-bound protein [Function unknown]
Probab=98.87 E-value=4.6e-06 Score=81.63 Aligned_cols=293 Identities=15% Similarity=0.064 Sum_probs=215.8
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC--hHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCCCH-HHHHHHHHHH
Q 003563 35 KMLGEASLQYAYGNFEQAISLLKEVVRLSPNL--PETYNTLGLAHSALGNHKSAFDFYVIAAHLSPKDS-ALWKQLLTFA 111 (810)
Q Consensus 35 ~~l~~a~~~~~~g~~~~A~~~~~~~l~~~p~~--~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~p~~~-~~~~~la~~~ 111 (810)
..+..|.+....||-..|.++-.+.-..-..+ +-++..-+..-...|+++.|.+-|+.++. +|..- -.+..|-.-.
T Consensus 86 qALStGliAagAGda~lARkmt~~~~~llssDqepLIhlLeAQaal~eG~~~~Ar~kfeAMl~-dPEtRllGLRgLyleA 164 (531)
T COG3898 86 QALSTGLIAAGAGDASLARKMTARASKLLSSDQEPLIHLLEAQAALLEGDYEDARKKFEAMLD-DPETRLLGLRGLYLEA 164 (531)
T ss_pred HHHhhhhhhhccCchHHHHHHHHHHHhhhhccchHHHHHHHHHHHHhcCchHHHHHHHHHHhc-ChHHHHHhHHHHHHHH
Confidence 45677888899999999999998887543333 44555567788889999999999988775 33321 1223333334
Q ss_pred HHcCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh---CCCCH---H--HHHHHHHHHHHcC
Q 003563 112 VQKGDTAQAMYYIRQAIRAEPKDISLRIHLASFYVEIGDYEKAAESYEQIQKL---FPDNV---D--ATKTGAQLFLKCG 183 (810)
Q Consensus 112 ~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~---~p~~~---~--~~~~la~~~~~~g 183 (810)
.+.|..+.|..+-+++....|.-+.++...-...+..|+++.|++..+..... .++.. . .+...+... -..
T Consensus 165 qr~GareaAr~yAe~Aa~~Ap~l~WA~~AtLe~r~~~gdWd~AlkLvd~~~~~~vie~~~aeR~rAvLLtAkA~s~-lda 243 (531)
T COG3898 165 QRLGAREAARHYAERAAEKAPQLPWAARATLEARCAAGDWDGALKLVDAQRAAKVIEKDVAERSRAVLLTAKAMSL-LDA 243 (531)
T ss_pred HhcccHHHHHHHHHHHHhhccCCchHHHHHHHHHHhcCChHHHHHHHHHHHHHHhhchhhHHHHHHHHHHHHHHHH-hcC
Confidence 57899999999999999999999999988888899999999999999876543 33322 1 122222222 234
Q ss_pred ChHHHHHHHHHHHhhCCCCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhcCCCCCcHHHHHHHHHHHHhcCCHHHHH
Q 003563 184 QTARSIGILEEYLKVHPSDADLSVIDLLVAILMENNAYEKTLQHIEHAQIVRFSGKELPLKLKVKAGICYLRLGNMEKAE 263 (810)
Q Consensus 184 ~~~~A~~~~~~~l~~~p~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~ 263 (810)
+...|...-..+.++.|+... .-..-+..++..|+..++-..++.+.+. .|.+. ++..|....--+.++
T Consensus 244 dp~~Ar~~A~~a~KL~pdlvP--aav~AAralf~d~~~rKg~~ilE~aWK~----ePHP~-----ia~lY~~ar~gdta~ 312 (531)
T COG3898 244 DPASARDDALEANKLAPDLVP--AAVVAARALFRDGNLRKGSKILETAWKA----EPHPD-----IALLYVRARSGDTAL 312 (531)
T ss_pred ChHHHHHHHHHHhhcCCccch--HHHHHHHHHHhccchhhhhhHHHHHHhc----CCChH-----HHHHHHHhcCCCcHH
Confidence 688899999999999999876 5557889999999999999999999987 33332 333444443334444
Q ss_pred HHHHHh--hccCCchhHhHHHHHHHHHHHcCCcHHHHHHHHHHHhccCCCCHHHHHHHHHHHHHc-cCHHHHHHHHHHHH
Q 003563 264 ILFADL--QWKNAIDHADLITEVADTLMSLGHSNSALKYYHFLETNAGTDNGYLYLKLAECYLSL-KERAHAIMFFYKAL 340 (810)
Q Consensus 264 ~~~~~~--~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~la~~~~~~-g~~~~A~~~~~~al 340 (810)
.-++++ +....+++.+..+.++..-+..|++..|..--+.+... .| ...++..++.+-... |+-.+...++-+++
T Consensus 313 dRlkRa~~L~slk~nnaes~~~va~aAlda~e~~~ARa~Aeaa~r~-~p-res~~lLlAdIeeAetGDqg~vR~wlAqav 390 (531)
T COG3898 313 DRLKRAKKLESLKPNNAESSLAVAEAALDAGEFSAARAKAEAAARE-AP-RESAYLLLADIEEAETGDQGKVRQWLAQAV 390 (531)
T ss_pred HHHHHHHHHHhcCccchHHHHHHHHHHHhccchHHHHHHHHHHhhh-Cc-hhhHHHHHHHHHhhccCchHHHHHHHHHHh
Confidence 444443 22223358889999999999999999999988888765 33 455777888887765 99999999999998
Q ss_pred hh
Q 003563 341 DR 342 (810)
Q Consensus 341 ~~ 342 (810)
..
T Consensus 391 ~A 392 (531)
T COG3898 391 KA 392 (531)
T ss_pred cC
Confidence 74
No 161
>CHL00033 ycf3 photosystem I assembly protein Ycf3
Probab=98.87 E-value=4.5e-08 Score=90.52 Aligned_cols=123 Identities=15% Similarity=0.110 Sum_probs=96.0
Q ss_pred CChHHHHHHHHHHHhcCCCC--HHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCC---HHHHHHHHHHHHHcCCHHHHH
Q 003563 81 GNHKSAFDFYVIAAHLSPKD--SALWKQLLTFAVQKGDTAQAMYYIRQAIRAEPKD---ISLRIHLASFYVEIGDYEKAA 155 (810)
Q Consensus 81 g~~~~A~~~~~~a~~~~p~~--~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~---~~~~~~la~~~~~~g~~~~A~ 155 (810)
+.+..+...+...+...+.+ ...|+.+|.++...|++++|+..|++++...|+. +.++..+|.++...|++++|+
T Consensus 13 ~~~~~~~~~l~~~~~~~~~~~~a~~~~~~g~~~~~~g~~~~A~~~~~~al~l~~~~~~~~~~~~~lg~~~~~~g~~~eA~ 92 (168)
T CHL00033 13 KTFTIVADILLRILPTTSGEKEAFTYYRDGMSAQSEGEYAEALQNYYEAMRLEIDPYDRSYILYNIGLIHTSNGEHTKAL 92 (168)
T ss_pred cccccchhhhhHhccCCchhHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhccccchhhHHHHHHHHHHHHHcCCHHHHH
Confidence 34555556665554455444 5678899999999999999999999999887653 458999999999999999999
Q ss_pred HHHHHHHHhCCCCHHHHHHHHHHHH-------HcCChH-------HHHHHHHHHHhhCCCCC
Q 003563 156 ESYEQIQKLFPDNVDATKTGAQLFL-------KCGQTA-------RSIGILEEYLKVHPSDA 203 (810)
Q Consensus 156 ~~~~~~l~~~p~~~~~~~~la~~~~-------~~g~~~-------~A~~~~~~~l~~~p~~~ 203 (810)
..+++++.+.|.....+..+|.++. ..|+++ +|+..+++++..+|.+.
T Consensus 93 ~~~~~Al~~~~~~~~~~~~la~i~~~~~~~~~~~g~~~~A~~~~~~a~~~~~~a~~~~p~~~ 154 (168)
T CHL00033 93 EYYFQALERNPFLPQALNNMAVICHYRGEQAIEQGDSEIAEAWFDQAAEYWKQAIALAPGNY 154 (168)
T ss_pred HHHHHHHHhCcCcHHHHHHHHHHHHHhhHHHHHcccHHHHHHHHHHHHHHHHHHHHhCcccH
Confidence 9999999999999998888888888 666666 44445555556666543
No 162
>PRK02603 photosystem I assembly protein Ycf3; Provisional
Probab=98.86 E-value=8.9e-08 Score=88.81 Aligned_cols=119 Identities=21% Similarity=0.337 Sum_probs=104.0
Q ss_pred CHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC---hHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCCCHHHHHH
Q 003563 30 SPGVTKMLGEASLQYAYGNFEQAISLLKEVVRLSPNL---PETYNTLGLAHSALGNHKSAFDFYVIAAHLSPKDSALWKQ 106 (810)
Q Consensus 30 ~~~~~~~l~~a~~~~~~g~~~~A~~~~~~~l~~~p~~---~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~p~~~~~~~~ 106 (810)
+.....++..|..+...|++++|+.+|++++...|+. +.++..+|.++...|++++|+..+.+++...|.+...+..
T Consensus 32 ~~~a~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~ 111 (172)
T PRK02603 32 AKEAFVYYRDGMSAQADGEYAEALENYEEALKLEEDPNDRSYILYNMGIIYASNGEHDKALEYYHQALELNPKQPSALNN 111 (172)
T ss_pred hhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhhccchHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcccHHHHHH
Confidence 3456678899999999999999999999999887764 4689999999999999999999999999999999999999
Q ss_pred HHHHHHHcCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC
Q 003563 107 LLTFAVQKGDTAQAMYYIRQAIRAEPKDISLRIHLASFYVEIGDYEKAAESYEQIQKLFPDN 168 (810)
Q Consensus 107 la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~ 168 (810)
+|.++...|+...+...+..++. .+++|++++++++..+|++
T Consensus 112 lg~~~~~~g~~~~a~~~~~~A~~--------------------~~~~A~~~~~~a~~~~p~~ 153 (172)
T PRK02603 112 IAVIYHKRGEKAEEAGDQDEAEA--------------------LFDKAAEYWKQAIRLAPNN 153 (172)
T ss_pred HHHHHHHcCChHhHhhCHHHHHH--------------------HHHHHHHHHHHHHhhCchh
Confidence 99999999998877766666543 2678888888888888876
No 163
>PF09976 TPR_21: Tetratricopeptide repeat; InterPro: IPR018704 This domain, found in various hypothetical prokaryotic proteins, has no known function.
Probab=98.86 E-value=1.4e-07 Score=84.62 Aligned_cols=115 Identities=20% Similarity=0.188 Sum_probs=52.1
Q ss_pred cCChHHHHHHHHHHHhcCCCC---HHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCC---HHHHHHHHHHHHHcCCHHH
Q 003563 80 LGNHKSAFDFYVIAAHLSPKD---SALWKQLLTFAVQKGDTAQAMYYIRQAIRAEPKD---ISLRIHLASFYVEIGDYEK 153 (810)
Q Consensus 80 ~g~~~~A~~~~~~a~~~~p~~---~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~---~~~~~~la~~~~~~g~~~~ 153 (810)
.++...+...++..+...|+. ..+.+.+|.+++..|++++|...|+.++...|+. +.+.+.+|.++...|++++
T Consensus 24 ~~~~~~~~~~~~~l~~~~~~s~ya~~A~l~lA~~~~~~g~~~~A~~~l~~~~~~~~d~~l~~~a~l~LA~~~~~~~~~d~ 103 (145)
T PF09976_consen 24 AGDPAKAEAAAEQLAKDYPSSPYAALAALQLAKAAYEQGDYDEAKAALEKALANAPDPELKPLARLRLARILLQQGQYDE 103 (145)
T ss_pred CCCHHHHHHHHHHHHHHCCCChHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHhhCCCHHHHHHHHHHHHHHHHHcCCHHH
Confidence 444444444455544444444 2334444555555555555555555555443322 2234444555555555555
Q ss_pred HHHHHHHHHHhCCCCHHHHHHHHHHHHHcCChHHHHHHHHHH
Q 003563 154 AAESYEQIQKLFPDNVDATKTGAQLFLKCGQTARSIGILEEY 195 (810)
Q Consensus 154 A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~ 195 (810)
|+..++.. ...+-.+.++..+|.++...|++++|+..|+++
T Consensus 104 Al~~L~~~-~~~~~~~~~~~~~Gdi~~~~g~~~~A~~~y~~A 144 (145)
T PF09976_consen 104 ALATLQQI-PDEAFKALAAELLGDIYLAQGDYDEARAAYQKA 144 (145)
T ss_pred HHHHHHhc-cCcchHHHHHHHHHHHHHHCCCHHHHHHHHHHh
Confidence 55444331 112222334444445555555555554444443
No 164
>KOG3081 consensus Vesicle coat complex COPI, epsilon subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=98.85 E-value=1.3e-06 Score=81.27 Aligned_cols=253 Identities=17% Similarity=0.179 Sum_probs=164.2
Q ss_pred HHHcCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCChHHHHH
Q 003563 111 AVQKGDTAQAMYYIRQAIRAEPKDISLRIHLASFYVEIGDYEKAAESYEQIQKLFPDNVDATKTGAQLFLKCGQTARSIG 190 (810)
Q Consensus 111 ~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~ 190 (810)
++-.|+|.+++....+.-... ........+.+.|..+|++...+......- .....+...++.....-++.++-+.
T Consensus 18 ~fY~Gnyq~~ine~~~~~~~~-~~~e~d~y~~raylAlg~~~~~~~eI~~~~---~~~lqAvr~~a~~~~~e~~~~~~~~ 93 (299)
T KOG3081|consen 18 YFYLGNYQQCINEAEKFSSSK-TDVELDVYMYRAYLALGQYQIVISEIKEGK---ATPLQAVRLLAEYLELESNKKSILA 93 (299)
T ss_pred HHHhhHHHHHHHHHHhhcccc-chhHHHHHHHHHHHHccccccccccccccc---CChHHHHHHHHHHhhCcchhHHHHH
Confidence 444566666665555544322 555666667777777777654443322211 1122344455555555555555444
Q ss_pred HHHHHHhhCCCCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhcCCCCCcHHHHHHHHHHHHhcCCHHHHHHHHHHhh
Q 003563 191 ILEEYLKVHPSDADLSVIDLLVAILMENNAYEKTLQHIEHAQIVRFSGKELPLKLKVKAGICYLRLGNMEKAEILFADLQ 270 (810)
Q Consensus 191 ~~~~~l~~~p~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~ 270 (810)
.+.+.+..............-+.++...|++++|++...... ..++...-..++.+..+.+-|...++++.
T Consensus 94 ~l~E~~a~~~~~sn~i~~l~aa~i~~~~~~~deAl~~~~~~~---------~lE~~Al~VqI~lk~~r~d~A~~~lk~mq 164 (299)
T KOG3081|consen 94 SLYELVADSTDGSNLIDLLLAAIIYMHDGDFDEALKALHLGE---------NLEAAALNVQILLKMHRFDLAEKELKKMQ 164 (299)
T ss_pred HHHHHHHhhccchhHHHHHHhhHHhhcCCChHHHHHHHhccc---------hHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 444444333222222244456677888888888888776632 23444555667778888888888888876
Q ss_pred ccCCchhHhHHHHHHHHHHH----cCCcHHHHHHHHHHHhccCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHhhcCCC
Q 003563 271 WKNAIDHADLITEVADTLMS----LGHSNSALKYYHFLETNAGTDNGYLYLKLAECYLSLKERAHAIMFFYKALDRFEDN 346 (810)
Q Consensus 271 ~~~~~~~~~~~~~la~~~~~----~~~~~~A~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~ 346 (810)
..+ +...+..+|.++.+ .+++.+|.-+|+..-+. .+..+......+.|+..+|++++|...++.++..++++
T Consensus 165 ~id---ed~tLtQLA~awv~la~ggek~qdAfyifeE~s~k-~~~T~~llnG~Av~~l~~~~~eeAe~lL~eaL~kd~~d 240 (299)
T KOG3081|consen 165 QID---EDATLTQLAQAWVKLATGGEKIQDAFYIFEELSEK-TPPTPLLLNGQAVCHLQLGRYEEAESLLEEALDKDAKD 240 (299)
T ss_pred ccc---hHHHHHHHHHHHHHHhccchhhhhHHHHHHHHhcc-cCCChHHHccHHHHHHHhcCHHHHHHHHHHHHhccCCC
Confidence 553 22344445555543 34688899999988865 67788899999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHcCCHHHHH-HhcCCCCCCCccc
Q 003563 347 IDARLTLASLLLEEAKEEEAI-TLLSPPKDLDSLD 380 (810)
Q Consensus 347 ~~~~~~la~~~~~~g~~~~A~-~~~~~a~~~~~~~ 380 (810)
++++.++..+-...|+..++. +.+.+....+|..
T Consensus 241 petL~Nliv~a~~~Gkd~~~~~r~l~QLk~~~p~h 275 (299)
T KOG3081|consen 241 PETLANLIVLALHLGKDAEVTERNLSQLKLSHPEH 275 (299)
T ss_pred HHHHHHHHHHHHHhCCChHHHHHHHHHHHhcCCcc
Confidence 999999999888888876654 3445555555643
No 165
>PRK10803 tol-pal system protein YbgF; Provisional
Probab=98.82 E-value=1.2e-07 Score=92.91 Aligned_cols=106 Identities=20% Similarity=0.198 Sum_probs=82.1
Q ss_pred HHHHHHHHHHHH-HHcCCHHHHHHHHHHHHHhCCCC---hHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCC---CHHHH
Q 003563 32 GVTKMLGEASLQ-YAYGNFEQAISLLKEVVRLSPNL---PETYNTLGLAHSALGNHKSAFDFYVIAAHLSPK---DSALW 104 (810)
Q Consensus 32 ~~~~~l~~a~~~-~~~g~~~~A~~~~~~~l~~~p~~---~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~p~---~~~~~ 104 (810)
+....+..|..+ +..|+|++|+..|+.+++..|++ +.+++.+|.+|+..|++++|+..|.+++...|+ .++++
T Consensus 141 ~e~~~Y~~A~~l~~~~~~y~~Ai~af~~fl~~yP~s~~a~~A~y~LG~~y~~~g~~~~A~~~f~~vv~~yP~s~~~~dAl 220 (263)
T PRK10803 141 DANTDYNAAIALVQDKSRQDDAIVAFQNFVKKYPDSTYQPNANYWLGQLNYNKGKKDDAAYYFASVVKNYPKSPKAADAM 220 (263)
T ss_pred CHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHCcCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCCcchhHHH
Confidence 345667777765 55688888888888888888876 478888888888888888888888888877665 46677
Q ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHHH
Q 003563 105 KQLLTFAVQKGDTAQAMYYIRQAIRAEPKDISL 137 (810)
Q Consensus 105 ~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~ 137 (810)
+.+|.++..+|++++|...|+++++..|+...+
T Consensus 221 ~klg~~~~~~g~~~~A~~~~~~vi~~yP~s~~a 253 (263)
T PRK10803 221 FKVGVIMQDKGDTAKAKAVYQQVIKKYPGTDGA 253 (263)
T ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHHCcCCHHH
Confidence 777888888888888888888888877776643
No 166
>PF12895 Apc3: Anaphase-promoting complex, cyclosome, subunit 3; PDB: 3KAE_D 3Q4A_B 2C2L_D 3Q47_B 3Q49_B 2XPI_A 3ULQ_A.
Probab=98.81 E-value=1.1e-08 Score=81.93 Aligned_cols=80 Identities=25% Similarity=0.463 Sum_probs=38.8
Q ss_pred cCChHHHHHHHHHHHhcCCC--CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHcCCHHHHHHH
Q 003563 80 LGNHKSAFDFYVIAAHLSPK--DSALWKQLLTFAVQKGDTAQAMYYIRQAIRAEPKDISLRIHLASFYVEIGDYEKAAES 157 (810)
Q Consensus 80 ~g~~~~A~~~~~~a~~~~p~--~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~ 157 (810)
+|+++.|+..+++++...|. +...++.+|.++++.|++++|+..+++ .+.+|.++...+.+|.++..+|++++|++.
T Consensus 2 ~~~y~~Ai~~~~k~~~~~~~~~~~~~~~~la~~~~~~~~y~~A~~~~~~-~~~~~~~~~~~~l~a~~~~~l~~y~eAi~~ 80 (84)
T PF12895_consen 2 QGNYENAIKYYEKLLELDPTNPNSAYLYNLAQCYFQQGKYEEAIELLQK-LKLDPSNPDIHYLLARCLLKLGKYEEAIKA 80 (84)
T ss_dssp TT-HHHHHHHHHHHHHHHCGTHHHHHHHHHHHHHHHTTHHHHHHHHHHC-HTHHHCHHHHHHHHHHHHHHTT-HHHHHHH
T ss_pred CccHHHHHHHHHHHHHHCCCChhHHHHHHHHHHHHHCCCHHHHHHHHHH-hCCCCCCHHHHHHHHHHHHHhCCHHHHHHH
Confidence 34555555555555555543 233444455555555555555555555 444444444444455555555555555555
Q ss_pred HHH
Q 003563 158 YEQ 160 (810)
Q Consensus 158 ~~~ 160 (810)
|++
T Consensus 81 l~~ 83 (84)
T PF12895_consen 81 LEK 83 (84)
T ss_dssp HHH
T ss_pred Hhc
Confidence 443
No 167
>KOG1070 consensus rRNA processing protein Rrp5 [RNA processing and modification]
Probab=98.81 E-value=2e-06 Score=97.03 Aligned_cols=218 Identities=15% Similarity=0.183 Sum_probs=173.6
Q ss_pred HHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHc-CCCC----HHHHHHHHHHHHHcCCHHHHHHHHH
Q 003563 85 SAFDFYVIAAHLSPKDSALWKQLLTFAVQKGDTAQAMYYIRQAIRA-EPKD----ISLRIHLASFYVEIGDYEKAAESYE 159 (810)
Q Consensus 85 ~A~~~~~~a~~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~-~p~~----~~~~~~la~~~~~~g~~~~A~~~~~ 159 (810)
+..+.|++.+.-+|+..-.|...-..+.+.++.++|.+..++|+.. ++.. ...|..+-++...-|.-+.-.+.|+
T Consensus 1442 esaeDferlvrssPNSSi~WI~YMaf~LelsEiekAR~iaerAL~tIN~REeeEKLNiWiA~lNlEn~yG~eesl~kVFe 1521 (1710)
T KOG1070|consen 1442 ESAEDFERLVRSSPNSSILWIRYMAFHLELSEIEKARKIAERALKTINFREEEEKLNIWIAYLNLENAYGTEESLKKVFE 1521 (1710)
T ss_pred cCHHHHHHHHhcCCCcchHHHHHHHHHhhhhhhHHHHHHHHHHhhhCCcchhHHHHHHHHHHHhHHHhhCcHHHHHHHHH
Confidence 4556777788888988888988888888889999999999998873 3332 2345555555556677777788888
Q ss_pred HHHHhCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHhhCCCCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhcCCC
Q 003563 160 QIQKLFPDNVDATKTGAQLFLKCGQTARSIGILEEYLKVHPSDADLSVIDLLVAILMENNAYEKTLQHIEHAQIVRFSGK 239 (810)
Q Consensus 160 ~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~ 239 (810)
++.+.. +...++..|..+|...+.+++|.++++.+++....... +|..++..++++.+-+.|...+.+++...| .
T Consensus 1522 RAcqyc-d~~~V~~~L~~iy~k~ek~~~A~ell~~m~KKF~q~~~--vW~~y~~fLl~~ne~~aa~~lL~rAL~~lP--k 1596 (1710)
T KOG1070|consen 1522 RACQYC-DAYTVHLKLLGIYEKSEKNDEADELLRLMLKKFGQTRK--VWIMYADFLLRQNEAEAARELLKRALKSLP--K 1596 (1710)
T ss_pred HHHHhc-chHHHHHHHHHHHHHhhcchhHHHHHHHHHHHhcchhh--HHHHHHHHHhcccHHHHHHHHHHHHHhhcc--h
Confidence 887764 33567788888999999999999999999888774443 788899999988888899999999988855 2
Q ss_pred CCcHHHHHHHHHHHHhcCCHHHHHHHHHHhhccCCchhHhHHHHHHHHHHHcCCcHHHHHHHHHHHhcc
Q 003563 240 ELPLKLKVKAGICYLRLGNMEKAEILFADLQWKNAIDHADLITEVADTLMSLGHSNSALKYYHFLETNA 308 (810)
Q Consensus 240 ~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~ 308 (810)
....+.....+.+.++.|+.+.+..+|+..+...|. ..+.|.-+.+.-.+.|+.+.+..+|++++...
T Consensus 1597 ~eHv~~IskfAqLEFk~GDaeRGRtlfEgll~ayPK-RtDlW~VYid~eik~~~~~~vR~lfeRvi~l~ 1664 (1710)
T KOG1070|consen 1597 QEHVEFISKFAQLEFKYGDAERGRTLFEGLLSAYPK-RTDLWSVYIDMEIKHGDIKYVRDLFERVIELK 1664 (1710)
T ss_pred hhhHHHHHHHHHHHhhcCCchhhHHHHHHHHhhCcc-chhHHHHHHHHHHccCCHHHHHHHHHHHHhcC
Confidence 446777788888889999999999999998888885 88889988999999999999999999888763
No 168
>PF13432 TPR_16: Tetratricopeptide repeat; PDB: 3CVP_A 3CVL_A 3CVQ_A 3CV0_A 2GW1_B 3CVN_A 3QKY_A 2PL2_B.
Probab=98.81 E-value=2e-08 Score=75.76 Aligned_cols=62 Identities=23% Similarity=0.360 Sum_probs=33.3
Q ss_pred HHHHHHHcCChHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCC
Q 003563 73 LGLAHSALGNHKSAFDFYVIAAHLSPKDSALWKQLLTFAVQKGDTAQAMYYIRQAIRAEPKD 134 (810)
Q Consensus 73 l~~~~~~~g~~~~A~~~~~~a~~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~ 134 (810)
+|..++..|++++|+..|++++..+|+++.+|+.+|.++..+|++++|+..|+++++.+|++
T Consensus 3 ~a~~~~~~g~~~~A~~~~~~~l~~~P~~~~a~~~lg~~~~~~g~~~~A~~~~~~a~~~~P~~ 64 (65)
T PF13432_consen 3 LARALYQQGDYDEAIAAFEQALKQDPDNPEAWYLLGRILYQQGRYDEALAYYERALELDPDN 64 (65)
T ss_dssp HHHHHHHCTHHHHHHHHHHHHHCCSTTHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHHSTT-
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCcCC
Confidence 45555555555555555555555555555555555555555555555555555555555544
No 169
>KOG3081 consensus Vesicle coat complex COPI, epsilon subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=98.80 E-value=2.5e-06 Score=79.42 Aligned_cols=256 Identities=14% Similarity=0.135 Sum_probs=157.3
Q ss_pred HHHHHHcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCHHH
Q 003563 40 ASLQYAYGNFEQAISLLKEVVRLSPNLPETYNTLGLAHSALGNHKSAFDFYVIAAHLSPKDSALWKQLLTFAVQKGDTAQ 119 (810)
Q Consensus 40 a~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~p~~~~~~~~la~~~~~~g~~~~ 119 (810)
...++-.|+|..++..-.+.-.. +...+....+.+.|..+|++..-+.....+- .....+...++.....-++.++
T Consensus 15 iRn~fY~Gnyq~~ine~~~~~~~-~~~~e~d~y~~raylAlg~~~~~~~eI~~~~---~~~lqAvr~~a~~~~~e~~~~~ 90 (299)
T KOG3081|consen 15 IRNYFYLGNYQQCINEAEKFSSS-KTDVELDVYMYRAYLALGQYQIVISEIKEGK---ATPLQAVRLLAEYLELESNKKS 90 (299)
T ss_pred HHHHHHhhHHHHHHHHHHhhccc-cchhHHHHHHHHHHHHccccccccccccccc---CChHHHHHHHHHHhhCcchhHH
Confidence 45567788888888776665433 2667777778888888888765554443321 1122344455555555555555
Q ss_pred HHHHHHHHHHcC--CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHh
Q 003563 120 AMYYIRQAIRAE--PKDISLRIHLASFYVEIGDYEKAAESYEQIQKLFPDNVDATKTGAQLFLKCGQTARSIGILEEYLK 197 (810)
Q Consensus 120 A~~~~~~al~~~--p~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~ 197 (810)
-+.-....+... ..+...+..-|.++...|++++|+...... .+.++...--.++.++.+.+-|...++++.+
T Consensus 91 ~~~~l~E~~a~~~~~sn~i~~l~aa~i~~~~~~~deAl~~~~~~-----~~lE~~Al~VqI~lk~~r~d~A~~~lk~mq~ 165 (299)
T KOG3081|consen 91 ILASLYELVADSTDGSNLIDLLLAAIIYMHDGDFDEALKALHLG-----ENLEAAALNVQILLKMHRFDLAEKELKKMQQ 165 (299)
T ss_pred HHHHHHHHHHhhccchhHHHHHHhhHHhhcCCChHHHHHHHhcc-----chHHHHHHHHHHHHHHHHHHHHHHHHHHHHc
Confidence 444444433322 222234455566777888888887776653 3445555556677777778888887777777
Q ss_pred hCCCCCChHHHHHHHHHHHH----cCCHHHHHHHHHHHHHHhcCCCCCcHHHHHHHHHHHHhcCCHHHHHHHHHHhhccC
Q 003563 198 VHPSDADLSVIDLLVAILME----NNAYEKTLQHIEHAQIVRFSGKELPLKLKVKAGICYLRLGNMEKAEILFADLQWKN 273 (810)
Q Consensus 198 ~~p~~~~~~~~~~la~~~~~----~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~ 273 (810)
.+.+. .+..||..+.. .+++.+|.-+|++..+. .+..+.+....+.|.+.+|++++|...++.++..+
T Consensus 166 ided~----tLtQLA~awv~la~ggek~qdAfyifeE~s~k----~~~T~~llnG~Av~~l~~~~~eeAe~lL~eaL~kd 237 (299)
T KOG3081|consen 166 IDEDA----TLTQLAQAWVKLATGGEKIQDAFYIFEELSEK----TPPTPLLLNGQAVCHLQLGRYEEAESLLEEALDKD 237 (299)
T ss_pred cchHH----HHHHHHHHHHHHhccchhhhhHHHHHHHHhcc----cCCChHHHccHHHHHHHhcCHHHHHHHHHHHHhcc
Confidence 65443 34455555543 34567777777776654 45556666777777777777777777777777766
Q ss_pred CchhHhHHHHHHHHHHHcCCcHHHHHHHHHHHhccCCCCH
Q 003563 274 AIDHADLITEVADTLMSLGHSNSALKYYHFLETNAGTDNG 313 (810)
Q Consensus 274 ~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~ 313 (810)
+. +++.+.++..+-...|...++..-+-.-+...+|..+
T Consensus 238 ~~-dpetL~Nliv~a~~~Gkd~~~~~r~l~QLk~~~p~h~ 276 (299)
T KOG3081|consen 238 AK-DPETLANLIVLALHLGKDAEVTERNLSQLKLSHPEHP 276 (299)
T ss_pred CC-CHHHHHHHHHHHHHhCCChHHHHHHHHHHHhcCCcch
Confidence 64 6777777777777777766665544333333355544
No 170
>KOG1070 consensus rRNA processing protein Rrp5 [RNA processing and modification]
Probab=98.79 E-value=1e-06 Score=99.16 Aligned_cols=223 Identities=13% Similarity=0.075 Sum_probs=190.6
Q ss_pred CCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHhh-CCCCC--ChHHHHHHHHHHHHcCCHHHHH
Q 003563 149 GDYEKAAESYEQIQKLFPDNVDATKTGAQLFLKCGQTARSIGILEEYLKV-HPSDA--DLSVIDLLVAILMENNAYEKTL 225 (810)
Q Consensus 149 g~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~-~p~~~--~~~~~~~la~~~~~~g~~~~A~ 225 (810)
++-.+..+-|++.+..+|+..-.|.......++.++.++|.+..++++.. ++... ...+|..+-++...-|.-+...
T Consensus 1438 ~~~pesaeDferlvrssPNSSi~WI~YMaf~LelsEiekAR~iaerAL~tIN~REeeEKLNiWiA~lNlEn~yG~eesl~ 1517 (1710)
T KOG1070|consen 1438 SRAPESAEDFERLVRSSPNSSILWIRYMAFHLELSEIEKARKIAERALKTINFREEEEKLNIWIAYLNLENAYGTEESLK 1517 (1710)
T ss_pred ccCCcCHHHHHHHHhcCCCcchHHHHHHHHHhhhhhhHHHHHHHHHHhhhCCcchhHHHHHHHHHHHhHHHhhCcHHHHH
Confidence 33445567788889999999999999999999999999999999999874 33222 1245666666777778888889
Q ss_pred HHHHHHHHHhcCCCCCcHHHHHHHHHHHHhcCCHHHHHHHHHHhhccCCchhHhHHHHHHHHHHHcCCcHHHHHHHHHHH
Q 003563 226 QHIEHAQIVRFSGKELPLKLKVKAGICYLRLGNMEKAEILFADLQWKNAIDHADLITEVADTLMSLGHSNSALKYYHFLE 305 (810)
Q Consensus 226 ~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~ 305 (810)
+.|+++.+. ..+..++..+.-+|...+++++|.++++.+++... .....|...+..++..++-+.|..++.+++
T Consensus 1518 kVFeRAcqy-----cd~~~V~~~L~~iy~k~ek~~~A~ell~~m~KKF~-q~~~vW~~y~~fLl~~ne~~aa~~lL~rAL 1591 (1710)
T KOG1070|consen 1518 KVFERACQY-----CDAYTVHLKLLGIYEKSEKNDEADELLRLMLKKFG-QTRKVWIMYADFLLRQNEAEAARELLKRAL 1591 (1710)
T ss_pred HHHHHHHHh-----cchHHHHHHHHHHHHHhhcchhHHHHHHHHHHHhc-chhhHHHHHHHHHhcccHHHHHHHHHHHHH
Confidence 999999886 56778888999999999999999999999988776 488899999999999999999999999998
Q ss_pred hccCCC--CHHHHHHHHHHHHHccCHHHHHHHHHHHHhhcCCCHHHHHHHHHHHHHcCCHHHHHHhcCCCCCCCc
Q 003563 306 TNAGTD--NGYLYLKLAECYLSLKERAHAIMFFYKALDRFEDNIDARLTLASLLLEEAKEEEAITLLSPPKDLDS 378 (810)
Q Consensus 306 ~~~~~~--~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~ 378 (810)
.. -|. ........|.+-++.|+.+.+...|+-.+..+|...+.|.-+...-.+.|+.+.+..+|++++.+.-
T Consensus 1592 ~~-lPk~eHv~~IskfAqLEFk~GDaeRGRtlfEgll~ayPKRtDlW~VYid~eik~~~~~~vR~lfeRvi~l~l 1665 (1710)
T KOG1070|consen 1592 KS-LPKQEHVEFISKFAQLEFKYGDAERGRTLFEGLLSAYPKRTDLWSVYIDMEIKHGDIKYVRDLFERVIELKL 1665 (1710)
T ss_pred hh-cchhhhHHHHHHHHHHHhhcCCchhhHHHHHHHHhhCccchhHHHHHHHHHHccCCHHHHHHHHHHHHhcCC
Confidence 76 444 7788888999999999999999999999999999999999999999999999999999999887654
No 171
>KOG2300 consensus Uncharacterized conserved protein [Function unknown]
Probab=98.79 E-value=0.00014 Score=73.51 Aligned_cols=192 Identities=13% Similarity=0.124 Sum_probs=122.3
Q ss_pred HHHHHHHcCCHHHHHHHHHHHHHHhcCCCC------CcHHHHHHHHHHHHhcCCHHHHHHHHHHhhccCCchhH--hHHH
Q 003563 211 LVAILMENNAYEKTLQHIEHAQIVRFSGKE------LPLKLKVKAGICYLRLGNMEKAEILFADLQWKNAIDHA--DLIT 282 (810)
Q Consensus 211 la~~~~~~g~~~~A~~~~~~~~~~~~~~~~------~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~--~~~~ 282 (810)
++.+-.-.|++.+|+.....+.+.....+. ....+...+|......+.++.|...|..+.+.....+. -+..
T Consensus 329 iv~c~lv~~~~~~al~~i~dm~~w~~r~p~~~Llr~~~~~ih~LlGlys~sv~~~enAe~hf~~a~k~t~~~dl~a~~nl 408 (629)
T KOG2300|consen 329 IVMCRLVRGDYVEALEEIVDMKNWCTRFPTPLLLRAHEAQIHMLLGLYSHSVNCYENAEFHFIEATKLTESIDLQAFCNL 408 (629)
T ss_pred HHHHHHHhCCHHHHHHHHHHHHHHHHhCCchHHHHHhHHHHHHHHhhHhhhcchHHHHHHHHHHHHHhhhHHHHHHHHHH
Confidence 444445567777777766666554322111 22355667777777888889999988888665443333 3345
Q ss_pred HHHHHHHHcCCcHHHHHHHHHHHhcc-CCC-----CHHHHHHHHHHHHHccCHHHHHHHHHHHHhhcCC-C-----HHHH
Q 003563 283 EVADTLMSLGHSNSALKYYHFLETNA-GTD-----NGYLYLKLAECYLSLKERAHAIMFFYKALDRFED-N-----IDAR 350 (810)
Q Consensus 283 ~la~~~~~~~~~~~A~~~~~~~~~~~-~~~-----~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~-~-----~~~~ 350 (810)
++|..|...|+-+.-.+.++.+-... .+- ...+++..|...+.++++.+|...+.+.+++... + .-.+
T Consensus 409 nlAi~YL~~~~~ed~y~~ld~i~p~nt~s~ssq~l~a~~~~v~glfaf~qn~lnEaK~~l~e~Lkmanaed~~rL~a~~L 488 (629)
T KOG2300|consen 409 NLAISYLRIGDAEDLYKALDLIGPLNTNSLSSQRLEASILYVYGLFAFKQNDLNEAKRFLRETLKMANAEDLNRLTACSL 488 (629)
T ss_pred hHHHHHHHhccHHHHHHHHHhcCCCCCCcchHHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHhhcchhhHHHHHHHHH
Confidence 77888888877665555554332210 010 2446777788888999999999999999987621 1 2234
Q ss_pred HHHHHHHHHcCCHHHHHHhcCCCCCCCcccCCCCCCChhhhHHHHHHHHHHHHHhcCC
Q 003563 351 LTLASLLLEEAKEEEAITLLSPPKDLDSLDMNSDKSNPWWLNEKIIMKLCHIYRAKGM 408 (810)
Q Consensus 351 ~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~ 408 (810)
..|+.+..-.|+..++.+....+.+.....++ .+-..| ..--+-.+|...|+
T Consensus 489 vLLs~v~lslgn~~es~nmvrpamqlAkKi~D--i~vqLw----s~si~~~L~~a~g~ 540 (629)
T KOG2300|consen 489 VLLSHVFLSLGNTVESRNMVRPAMQLAKKIPD--IPVQLW----SSSILTDLYQALGE 540 (629)
T ss_pred HHHHHHHHHhcchHHHHhccchHHHHHhcCCC--chHHHH----HHHHHHHHHHHhCc
Confidence 56788888899999999999988877655442 222334 22333455666665
No 172
>KOG0543 consensus FKBP-type peptidyl-prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones]
Probab=98.78 E-value=2e-07 Score=92.49 Aligned_cols=99 Identities=14% Similarity=0.193 Sum_probs=77.7
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHH
Q 003563 102 ALWKQLLTFAVQKGDTAQAMYYIRQAIRAEPKDISLRIHLASFYVEIGDYEKAAESYEQIQKLFPDNVDATKTGAQLFLK 181 (810)
Q Consensus 102 ~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~ 181 (810)
.++.+++.|+.++++|.+|+....+++..+|+|+.+++..|.++..+|+++.|+..|++++++.|.|..+...+..+..+
T Consensus 258 ~~~lNlA~c~lKl~~~~~Ai~~c~kvLe~~~~N~KALyRrG~A~l~~~e~~~A~~df~ka~k~~P~Nka~~~el~~l~~k 337 (397)
T KOG0543|consen 258 ACHLNLAACYLKLKEYKEAIESCNKVLELDPNNVKALYRRGQALLALGEYDLARDDFQKALKLEPSNKAARAELIKLKQK 337 (397)
T ss_pred HHhhHHHHHHHhhhhHHHHHHHHHHHHhcCCCchhHHHHHHHHHHhhccHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHH
Confidence 45677888888888888888888888888888888888888888888888888888888888888888887777777766
Q ss_pred cCChHHH-HHHHHHHHhhCC
Q 003563 182 CGQTARS-IGILEEYLKVHP 200 (810)
Q Consensus 182 ~g~~~~A-~~~~~~~l~~~p 200 (810)
...+.+. .+.|.+++...+
T Consensus 338 ~~~~~~kekk~y~~mF~k~~ 357 (397)
T KOG0543|consen 338 IREYEEKEKKMYANMFAKLA 357 (397)
T ss_pred HHHHHHHHHHHHHHHhhccc
Confidence 6555544 667777776544
No 173
>KOG0543 consensus FKBP-type peptidyl-prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones]
Probab=98.76 E-value=1.6e-07 Score=93.26 Aligned_cols=95 Identities=23% Similarity=0.343 Sum_probs=47.2
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHhhCCCCCChHHHHHHHHHHH
Q 003563 137 LRIHLASFYVEIGDYEKAAESYEQIQKLFPDNVDATKTGAQLFLKCGQTARSIGILEEYLKVHPSDADLSVIDLLVAILM 216 (810)
Q Consensus 137 ~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~~~la~~~~ 216 (810)
++.+++.++.++++|.+|+....+++..+|+|..+++..|.++...|+++.|+..|+++++..|+|.. +...+..+..
T Consensus 259 ~~lNlA~c~lKl~~~~~Ai~~c~kvLe~~~~N~KALyRrG~A~l~~~e~~~A~~df~ka~k~~P~Nka--~~~el~~l~~ 336 (397)
T KOG0543|consen 259 CHLNLAACYLKLKEYKEAIESCNKVLELDPNNVKALYRRGQALLALGEYDLARDDFQKALKLEPSNKA--ARAELIKLKQ 336 (397)
T ss_pred HhhHHHHHHHhhhhHHHHHHHHHHHHhcCCCchhHHHHHHHHHHhhccHHHHHHHHHHHHHhCCCcHH--HHHHHHHHHH
Confidence 34455555555555555555555555555555555555555555555555555555555555555533 3334444443
Q ss_pred HcCCHHHH-HHHHHHHHH
Q 003563 217 ENNAYEKT-LQHIEHAQI 233 (810)
Q Consensus 217 ~~g~~~~A-~~~~~~~~~ 233 (810)
+..++.+. .+.|..+..
T Consensus 337 k~~~~~~kekk~y~~mF~ 354 (397)
T KOG0543|consen 337 KIREYEEKEKKMYANMFA 354 (397)
T ss_pred HHHHHHHHHHHHHHHHhh
Confidence 33333322 444444443
No 174
>COG0457 NrfG FOG: TPR repeat [General function prediction only]
Probab=98.76 E-value=2e-05 Score=78.32 Aligned_cols=223 Identities=26% Similarity=0.309 Sum_probs=158.8
Q ss_pred cCCHHHHHHHHHHHHHhCCC--ChHHHHHHHHHHHHcCChHHHHHHHHHHHh--cCCCCHHHHHHHHHHHHHcCCHHHHH
Q 003563 46 YGNFEQAISLLKEVVRLSPN--LPETYNTLGLAHSALGNHKSAFDFYVIAAH--LSPKDSALWKQLLTFAVQKGDTAQAM 121 (810)
Q Consensus 46 ~g~~~~A~~~~~~~l~~~p~--~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~--~~p~~~~~~~~la~~~~~~g~~~~A~ 121 (810)
.+.+..+...+...+...+. ........+..+...+++..+...+..... ..+.....+...+......+++..++
T Consensus 36 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 115 (291)
T COG0457 36 LGELAEALELLEEALELLPNSDLAGLLLLLALALLKLGRLEEALELLEKALELELLPNLAEALLNLGLLLEALGKYEEAL 115 (291)
T ss_pred HhhHHHHHHHHHHHHhcCccccchHHHHHHHHHHHHcccHHHHHHHHHHHHhhhhccchHHHHHHHHHHHHHHhhHHHHH
Confidence 46777777788877777765 367777888888888888888888888776 56777778888888888888888888
Q ss_pred HHHHHHHHcCCCCHHHHHHHHH-HHHHcCCHHHHHHHHHHHHHhCC---CCHHHHHHHHHHHHHcCChHHHHHHHHHHHh
Q 003563 122 YYIRQAIRAEPKDISLRIHLAS-FYVEIGDYEKAAESYEQIQKLFP---DNVDATKTGAQLFLKCGQTARSIGILEEYLK 197 (810)
Q Consensus 122 ~~~~~al~~~p~~~~~~~~la~-~~~~~g~~~~A~~~~~~~l~~~p---~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~ 197 (810)
..+.+++...+.........+. ++...|+++.|...+.+++...| .........+..+...++++.|+..+.+++.
T Consensus 116 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~ 195 (291)
T COG0457 116 ELLEKALALDPDPDLAEALLALGALYELGDYEEALELYEKALELDPELNELAEALLALGALLEALGRYEEALELLEKALK 195 (291)
T ss_pred HHHHHHHcCCCCcchHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCccchHHHHHHhhhHHHHhcCHHHHHHHHHHHHh
Confidence 8888888877766555555555 77888888888888888877665 2445555556666777778888888887777
Q ss_pred hCCC-CCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhcCCCCCcHHHHHHHHHHHHhcCCHHHHHHHHHHhhccCC
Q 003563 198 VHPS-DADLSVIDLLVAILMENNAYEKTLQHIEHAQIVRFSGKELPLKLKVKAGICYLRLGNMEKAEILFADLQWKNA 274 (810)
Q Consensus 198 ~~p~-~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~ 274 (810)
..+. ... .+..++..+...++++.|...+..+... .+.........+..+...+..+++...+.+.+...+
T Consensus 196 ~~~~~~~~--~~~~~~~~~~~~~~~~~a~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 267 (291)
T COG0457 196 LNPDDDAE--ALLNLGLLYLKLGKYEEALEYYEKALEL----DPDNAEALYNLALLLLELGRYEEALEALEKALELDP 267 (291)
T ss_pred hCcccchH--HHHHhhHHHHHcccHHHHHHHHHHHHhh----CcccHHHHhhHHHHHHHcCCHHHHHHHHHHHHHhCc
Confidence 7776 333 5667777777777777777777777766 233334444555555555556666666666655544
No 175
>PRK10803 tol-pal system protein YbgF; Provisional
Probab=98.74 E-value=4.1e-07 Score=89.11 Aligned_cols=104 Identities=16% Similarity=0.214 Sum_probs=73.1
Q ss_pred CHHHHHHHHHHH-HHcCCHHHHHHHHHHHHHcCCCC---HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC---HHHH
Q 003563 100 DSALWKQLLTFA-VQKGDTAQAMYYIRQAIRAEPKD---ISLRIHLASFYVEIGDYEKAAESYEQIQKLFPDN---VDAT 172 (810)
Q Consensus 100 ~~~~~~~la~~~-~~~g~~~~A~~~~~~al~~~p~~---~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~---~~~~ 172 (810)
+...++..|..+ ...|++++|+..|++.++..|++ +.+++.+|.+|+..|++++|+..|+++++.+|++ ++++
T Consensus 141 ~e~~~Y~~A~~l~~~~~~y~~Ai~af~~fl~~yP~s~~a~~A~y~LG~~y~~~g~~~~A~~~f~~vv~~yP~s~~~~dAl 220 (263)
T PRK10803 141 DANTDYNAAIALVQDKSRQDDAIVAFQNFVKKYPDSTYQPNANYWLGQLNYNKGKKDDAAYYFASVVKNYPKSPKAADAM 220 (263)
T ss_pred CHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHCcCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCCcchhHHH
Confidence 345555555554 45577777777777777777766 4677777777777777777777777777776664 5667
Q ss_pred HHHHHHHHHcCChHHHHHHHHHHHhhCCCCC
Q 003563 173 KTGAQLFLKCGQTARSIGILEEYLKVHPSDA 203 (810)
Q Consensus 173 ~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~ 203 (810)
+.+|.++...|++++|...|+++++..|++.
T Consensus 221 ~klg~~~~~~g~~~~A~~~~~~vi~~yP~s~ 251 (263)
T PRK10803 221 FKVGVIMQDKGDTAKAKAVYQQVIKKYPGTD 251 (263)
T ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHHCcCCH
Confidence 7777777777777777777777777777654
No 176
>KOG3617 consensus WD40 and TPR repeat-containing protein [General function prediction only]
Probab=98.73 E-value=9.2e-06 Score=86.72 Aligned_cols=297 Identities=16% Similarity=0.183 Sum_probs=183.2
Q ss_pred HHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCHH
Q 003563 39 EASLQYAYGNFEQAISLLKEVVRLSPNLPETYNTLGLAHSALGNHKSAFDFYVIAAHLSPKDSALWKQLLTFAVQKGDTA 118 (810)
Q Consensus 39 ~a~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~p~~~~~~~~la~~~~~~g~~~ 118 (810)
-|......|-.++|..+|.+.-+ +-.+-..|...|.+++|.+..+.--.+ .-...+++.|.-+...++.+
T Consensus 806 vAvLAieLgMlEeA~~lYr~ckR--------~DLlNKlyQs~g~w~eA~eiAE~~DRi--HLr~Tyy~yA~~Lear~Di~ 875 (1416)
T KOG3617|consen 806 VAVLAIELGMLEEALILYRQCKR--------YDLLNKLYQSQGMWSEAFEIAETKDRI--HLRNTYYNYAKYLEARRDIE 875 (1416)
T ss_pred HHHHHHHHhhHHHHHHHHHHHHH--------HHHHHHHHHhcccHHHHHHHHhhccce--ehhhhHHHHHHHHHhhccHH
Confidence 35556777888888888887744 334566777788888877665432111 12345777788888888888
Q ss_pred HHHHHHHHH----------HHcCC----------CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHH
Q 003563 119 QAMYYIRQA----------IRAEP----------KDISLRIHLASFYVEIGDYEKAAESYEQIQKLFPDNVDATKTGAQL 178 (810)
Q Consensus 119 ~A~~~~~~a----------l~~~p----------~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~la~~ 178 (810)
.|+++|+++ +..+| .++..|...|..+...|+.+.|+.+|..+-. |+.+..+
T Consensus 876 ~AleyyEK~~~hafev~rmL~e~p~~~e~Yv~~~~d~~L~~WWgqYlES~GemdaAl~~Y~~A~D--------~fs~VrI 947 (1416)
T KOG3617|consen 876 AALEYYEKAGVHAFEVFRMLKEYPKQIEQYVRRKRDESLYSWWGQYLESVGEMDAALSFYSSAKD--------YFSMVRI 947 (1416)
T ss_pred HHHHHHHhcCChHHHHHHHHHhChHHHHHHHHhccchHHHHHHHHHHhcccchHHHHHHHHHhhh--------hhhheee
Confidence 888888764 22223 2345566777777788888888888877632 4556666
Q ss_pred HHHcCChHHHHHHHHHHHhhCCCCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHH------hcCCCCCcHHHHHHHHHH
Q 003563 179 FLKCGQTARSIGILEEYLKVHPSDADLSVIDLLVAILMENNAYEKTLQHIEHAQIV------RFSGKELPLKLKVKAGIC 252 (810)
Q Consensus 179 ~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~------~~~~~~~~~~~~~~la~~ 252 (810)
..-+|+.++|..+.++. . +-.+.+.+|+.|...|++.+|+..|.++... ...+ ... -.+..+
T Consensus 948 ~C~qGk~~kAa~iA~es-----g--d~AAcYhlaR~YEn~g~v~~Av~FfTrAqafsnAIRlcKEn-d~~----d~L~nl 1015 (1416)
T KOG3617|consen 948 KCIQGKTDKAARIAEES-----G--DKAACYHLARMYENDGDVVKAVKFFTRAQAFSNAIRLCKEN-DMK----DRLANL 1015 (1416)
T ss_pred EeeccCchHHHHHHHhc-----c--cHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHhc-CHH----HHHHHH
Confidence 77778888777665542 2 2237889999999999999999999887543 1111 111 111222
Q ss_pred HHhc--CCHHHHHHHHHHhhccCCchhHhHHHHHHHHHHHcCCcHHHHHHHHH----------HHhccCCCCHHHHHHHH
Q 003563 253 YLRL--GNMEKAEILFADLQWKNAIDHADLITEVADTLMSLGHSNSALKYYHF----------LETNAGTDNGYLYLKLA 320 (810)
Q Consensus 253 ~~~~--g~~~~A~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~----------~~~~~~~~~~~~~~~la 320 (810)
.... .+.-.|-.+|+..-. .......+|.+.|.+.+|+++.=+ +.++....+|.++..-+
T Consensus 1016 al~s~~~d~v~aArYyEe~g~--------~~~~AVmLYHkAGm~~kALelAF~tqQf~aL~lIa~DLd~~sDp~ll~Rca 1087 (1416)
T KOG3617|consen 1016 ALMSGGSDLVSAARYYEELGG--------YAHKAVMLYHKAGMIGKALELAFRTQQFSALDLIAKDLDAGSDPKLLRRCA 1087 (1416)
T ss_pred HhhcCchhHHHHHHHHHHcch--------hhhHHHHHHHhhcchHHHHHHHHhhcccHHHHHHHHhcCCCCCHHHHHHHH
Confidence 2211 223334444444310 011122344455555555543211 22233456888999999
Q ss_pred HHHHHccCHHHHHHHHHH------HHhhc----------------CC---------CHHHHHHHHHHHHHcCCHHHHHHh
Q 003563 321 ECYLSLKERAHAIMFFYK------ALDRF----------------ED---------NIDARLTLASLLLEEAKEEEAITL 369 (810)
Q Consensus 321 ~~~~~~g~~~~A~~~~~~------al~~~----------------p~---------~~~~~~~la~~~~~~g~~~~A~~~ 369 (810)
..+....+|++|...+-. ++.+. |. ...++..+|.++.++|.|-.|-+-
T Consensus 1088 dFF~~~~qyekAV~lL~~ar~~~~AlqlC~~~nv~vtee~aE~mTp~Kd~~~~e~~R~~vLeqvae~c~qQG~Yh~AtKK 1167 (1416)
T KOG3617|consen 1088 DFFENNQQYEKAVNLLCLAREFSGALQLCKNRNVRVTEEFAELMTPTKDDMPNEQERKQVLEQVAELCLQQGAYHAATKK 1167 (1416)
T ss_pred HHHHhHHHHHHHHHHHHHHHHHHHHHHHHhcCCCchhHHHHHhcCcCcCCCccHHHHHHHHHHHHHHHHhccchHHHHHH
Confidence 999999999998876544 34321 10 135667788888888888888777
Q ss_pred cCCC
Q 003563 370 LSPP 373 (810)
Q Consensus 370 ~~~a 373 (810)
|.++
T Consensus 1168 fTQA 1171 (1416)
T KOG3617|consen 1168 FTQA 1171 (1416)
T ss_pred Hhhh
Confidence 7655
No 177
>KOG2471 consensus TPR repeat-containing protein [General function prediction only]
Probab=98.72 E-value=5.2e-06 Score=83.53 Aligned_cols=336 Identities=15% Similarity=0.105 Sum_probs=219.1
Q ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHcCChHHHHHHHHHH-HhcCCC--------CHHHHHHH
Q 003563 37 LGEASLQYAYGNFEQAISLLKEVVRLSPNLPETYNTLGLAHSALGNHKSAFDFYVIA-AHLSPK--------DSALWKQL 107 (810)
Q Consensus 37 l~~a~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~a-~~~~p~--------~~~~~~~l 107 (810)
..+...++...+...+....+.++.+..+.+.++...+..++..|++.+|.+.+... ++..|. ....|.++
T Consensus 210 ~ykVr~llq~~~Lk~~krevK~vmn~a~~s~~~l~LKsq~eY~~gn~~kA~KlL~~sni~~~~g~~~T~q~~~cif~NNl 289 (696)
T KOG2471|consen 210 LYKVRFLLQTRNLKLAKREVKHVMNIAQDSSMALLLKSQLEYAHGNHPKAMKLLLVSNIHKEAGGTITPQLSSCIFNNNL 289 (696)
T ss_pred HhhHHHHHHHHHHHHHHHhhhhhhhhcCCCcHHHHHHHHHHHHhcchHHHHHHHHhcccccccCccccchhhhheeecCc
Confidence 445556677777888888888888888889999999999999999999999887543 222222 23457899
Q ss_pred HHHHHHcCCHHHHHHHHHHHHH-c--------CC---------CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCH
Q 003563 108 LTFAVQKGDTAQAMYYIRQAIR-A--------EP---------KDISLRIHLASFYVEIGDYEKAAESYEQIQKLFPDNV 169 (810)
Q Consensus 108 a~~~~~~g~~~~A~~~~~~al~-~--------~p---------~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~ 169 (810)
|.++++.|.|.-+..+|.++++ . .| .....+++.|..|...|++-.|.++|.++......+|
T Consensus 290 GcIh~~~~~y~~~~~~F~kAL~N~c~qL~~g~~~~~~~tls~nks~eilYNcG~~~Lh~grPl~AfqCf~~av~vfh~nP 369 (696)
T KOG2471|consen 290 GCIHYQLGCYQASSVLFLKALRNSCSQLRNGLKPAKTFTLSQNKSMEILYNCGLLYLHSGRPLLAFQCFQKAVHVFHRNP 369 (696)
T ss_pred ceEeeehhhHHHHHHHHHHHHHHHHHHHhccCCCCcceehhcccchhhHHhhhHHHHhcCCcHHHHHHHHHHHHHHhcCc
Confidence 9999999999999999999996 1 11 2346789999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHcCC---hHHHHHHHHH--------------H--Hhh-----CCCCC-ChHHHHHHHHHHHHcCCH---
Q 003563 170 DATKTGAQLFLKCGQ---TARSIGILEE--------------Y--LKV-----HPSDA-DLSVIDLLVAILMENNAY--- 221 (810)
Q Consensus 170 ~~~~~la~~~~~~g~---~~~A~~~~~~--------------~--l~~-----~p~~~-~~~~~~~la~~~~~~g~~--- 221 (810)
..|..+|.+++...+ .++-.....+ . ++. .|.+. -+..-..++.++.+.+-+
T Consensus 370 rlWLRlAEcCima~~~~l~ee~~~s~s~~~i~~~vig~g~rr~~m~~~nt~~~~~qS~~~p~~slefA~vCLrnal~Ll~ 449 (696)
T KOG2471|consen 370 RLWLRLAECCIMALQKGLLEEGNSSLSRSEIRVHVIGKGNRRQLMIEENTYVELAQSNQLPKLSLEFARVCLRNALYLLN 449 (696)
T ss_pred HHHHHHHHHHHHHhhhhhhhhccCCcccccceeeeecccchhheeecccceeccccccCCCccccHHHHHHHHhhhhcCc
Confidence 999999998764311 1111111111 0 000 00000 000111233333222110
Q ss_pred --HHHHHHHHHHHHH----------------------------hcCCCCCcH--------HHHHHHHHHHHhcCCHHHHH
Q 003563 222 --EKTLQHIEHAQIV----------------------------RFSGKELPL--------KLKVKAGICYLRLGNMEKAE 263 (810)
Q Consensus 222 --~~A~~~~~~~~~~----------------------------~~~~~~~~~--------~~~~~la~~~~~~g~~~~A~ 263 (810)
..--..+.-+... .|++.|... .++...+.+-..+|+.-.|+
T Consensus 450 e~q~~~~~~~~a~ns~~~g~~~e~~e~~~t~~Sk~h~gd~~~~~p~ssp~~~e~leNm~~ai~A~~ayV~L~Lgd~i~AL 529 (696)
T KOG2471|consen 450 EKQDLGSILSVAMNSTKEGSSSEHEEGNTTTDSKEHKGDMSQEIPQSSPSAFEDLENMRQAIFANMAYVELELGDPIKAL 529 (696)
T ss_pred hhhcchhhhhhhccccccCCCCcCCCCCCCcchhcCCCCCCccCCCCCcchHHHHHHHHHHHHHHHHHHHHHhcChhhHH
Confidence 0000000000000 000111111 23445666778899999999
Q ss_pred HHHHHhhccCCchhHhHHHHHHHH-----HHHcCCcHHHHHHHHHHHhc----------------------------cCC
Q 003563 264 ILFADLQWKNAIDHADLITEVADT-----LMSLGHSNSALKYYHFLETN----------------------------AGT 310 (810)
Q Consensus 264 ~~~~~~~~~~~~~~~~~~~~la~~-----~~~~~~~~~A~~~~~~~~~~----------------------------~~~ 310 (810)
..-++++... +-..++..+|.+ ++-..+..+|...+..-.-. ..+
T Consensus 530 ~~a~kLLq~~--~lS~~~kfLGHiYAaEAL~lldr~seA~~HL~p~~~~~~~f~~~~n~~Df~~~~~~~e~l~~s~~r~~ 607 (696)
T KOG2471|consen 530 SAATKLLQLA--DLSKIYKFLGHIYAAEALCLLDRPSEAGAHLSPYLLGQDDFKLPYNQEDFDQWWKHTETLDPSTGRTR 607 (696)
T ss_pred HHHHHHHhhh--hhhhHHHHHHHHHHHHHHHHcCChhhhhhccChhhcCCcccccccchhhhhhhhccccccCCcCCCCc
Confidence 9999987652 245555555554 46677888888776641100 000
Q ss_pred C---------CHHHHHHHHHHHHHccCHHHHHHHHHHHHhhcC--CCHHHHHHHHHHHHHcCCHHHHHHhcCCCC
Q 003563 311 D---------NGYLYLKLAECYLSLKERAHAIMFFYKALDRFE--DNIDARLTLASLLLEEAKEEEAITLLSPPK 374 (810)
Q Consensus 311 ~---------~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p--~~~~~~~~la~~~~~~g~~~~A~~~~~~a~ 374 (810)
+ ....++++|.++.-+|++++|..++..+..+-| .++++...-..+-.++|+...|+..+++..
T Consensus 608 q~~~~sv~~Ar~v~~~nLa~a~alq~~~dqAk~ll~~aatl~hs~v~~~A~~lavyidL~~G~~q~al~~lk~~~ 682 (696)
T KOG2471|consen 608 QSVFLSVEEARGVLFANLAAALALQGHHDQAKSLLTHAATLLHSLVNVQATVLAVYIDLMLGRSQDALARLKQCT 682 (696)
T ss_pred ccccCCHHHHhHHHHHHHHHHHHHhcccHHHHHHHHHHHHhhhccccHHHHHHHHHHHHhcCCCcchHHHHHhcc
Confidence 0 123578899999999999999999999998877 556666666667778899999998887654
No 178
>COG0457 NrfG FOG: TPR repeat [General function prediction only]
Probab=98.71 E-value=6.8e-05 Score=74.43 Aligned_cols=221 Identities=23% Similarity=0.263 Sum_probs=124.5
Q ss_pred cCChHHHHHHHHHHHhcCCC--CHHHHHHHHHHHHHcCCHHHHHHHHHHHHH--cCCCCHHHHHHHHHHHHHcCCHHHHH
Q 003563 80 LGNHKSAFDFYVIAAHLSPK--DSALWKQLLTFAVQKGDTAQAMYYIRQAIR--AEPKDISLRIHLASFYVEIGDYEKAA 155 (810)
Q Consensus 80 ~g~~~~A~~~~~~a~~~~p~--~~~~~~~la~~~~~~g~~~~A~~~~~~al~--~~p~~~~~~~~la~~~~~~g~~~~A~ 155 (810)
.+.+..+...+.......+. ........+..+...+.+..+...+..... ..+.....+...+..+...+++..++
T Consensus 36 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 115 (291)
T COG0457 36 LGELAEALELLEEALELLPNSDLAGLLLLLALALLKLGRLEEALELLEKALELELLPNLAEALLNLGLLLEALGKYEEAL 115 (291)
T ss_pred HhhHHHHHHHHHHHHhcCccccchHHHHHHHHHHHHcccHHHHHHHHHHHHhhhhccchHHHHHHHHHHHHHHhhHHHHH
Confidence 35566666666666666655 356666677777777777777777777765 55666666777777777777777777
Q ss_pred HHHHHHHHhCCCCHHHHHHHHH-HHHHcCChHHHHHHHHHHHhhCCC-CCChHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Q 003563 156 ESYEQIQKLFPDNVDATKTGAQ-LFLKCGQTARSIGILEEYLKVHPS-DADLSVIDLLVAILMENNAYEKTLQHIEHAQI 233 (810)
Q Consensus 156 ~~~~~~l~~~p~~~~~~~~la~-~~~~~g~~~~A~~~~~~~l~~~p~-~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~ 233 (810)
..+..++...+.+.......+. ++...|+++.|...+.+++...|. ..........+..+...++++.|+..+.+++.
T Consensus 116 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~ 195 (291)
T COG0457 116 ELLEKALALDPDPDLAEALLALGALYELGDYEEALELYEKALELDPELNELAEALLALGALLEALGRYEEALELLEKALK 195 (291)
T ss_pred HHHHHHHcCCCCcchHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCccchHHHHHHhhhHHHHhcCHHHHHHHHHHHHh
Confidence 7777777766665444444444 666677777777777776654442 11122333444445556666666666666665
Q ss_pred HhcCCCCC-cHHHHHHHHHHHHhcCCHHHHHHHHHHhhccCCchhHhHHHHHHHHHHHcCCcHHHHHHHHHHH
Q 003563 234 VRFSGKEL-PLKLKVKAGICYLRLGNMEKAEILFADLQWKNAIDHADLITEVADTLMSLGHSNSALKYYHFLE 305 (810)
Q Consensus 234 ~~~~~~~~-~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~ 305 (810)
. .+. .......++..+...+++++|...+..++...+. ....+..++..+...+.++++...+.+.+
T Consensus 196 ~----~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 263 (291)
T COG0457 196 L----NPDDDAEALLNLGLLYLKLGKYEEALEYYEKALELDPD-NAEALYNLALLLLELGRYEEALEALEKAL 263 (291)
T ss_pred h----CcccchHHHHHhhHHHHHcccHHHHHHHHHHHHhhCcc-cHHHHhhHHHHHHHcCCHHHHHHHHHHHH
Confidence 5 222 3344444455555555555555555554444332 22233333333333333444444444443
No 179
>COG3898 Uncharacterized membrane-bound protein [Function unknown]
Probab=98.71 E-value=0.00011 Score=72.20 Aligned_cols=293 Identities=16% Similarity=0.078 Sum_probs=219.0
Q ss_pred HHHHHHHHcCChHHHHHHHHHHHhcCCCCHHH--HHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHH-HHHHHHHHHHHc
Q 003563 72 TLGLAHSALGNHKSAFDFYVIAAHLSPKDSAL--WKQLLTFAVQKGDTAQAMYYIRQAIRAEPKDIS-LRIHLASFYVEI 148 (810)
Q Consensus 72 ~l~~~~~~~g~~~~A~~~~~~a~~~~p~~~~~--~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~-~~~~la~~~~~~ 148 (810)
.-|.+..-.||-..|.+.-.++-.+-..+.+. +..-+....-.|+++.|.+-|+.++. +|..-. .+..|-.-....
T Consensus 89 StGliAagAGda~lARkmt~~~~~llssDqepLIhlLeAQaal~eG~~~~Ar~kfeAMl~-dPEtRllGLRgLyleAqr~ 167 (531)
T COG3898 89 STGLIAAGAGDASLARKMTARASKLLSSDQEPLIHLLEAQAALLEGDYEDARKKFEAMLD-DPETRLLGLRGLYLEAQRL 167 (531)
T ss_pred hhhhhhhccCchHHHHHHHHHHHhhhhccchHHHHHHHHHHHHhcCchHHHHHHHHHHhc-ChHHHHHhHHHHHHHHHhc
Confidence 34677777899999999998887655444444 44447777888999999999998885 343221 123333344679
Q ss_pred CCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHhhC---CCCCCh-HHHHHHHHH-HHHcCCHHH
Q 003563 149 GDYEKAAESYEQIQKLFPDNVDATKTGAQLFLKCGQTARSIGILEEYLKVH---PSDADL-SVIDLLVAI-LMENNAYEK 223 (810)
Q Consensus 149 g~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~---p~~~~~-~~~~~la~~-~~~~g~~~~ 223 (810)
|..+.|..+-+.+-...|.-+.++...-...+..|+++.|+++.+...... ++..+- .+...-+.. -.-.-+...
T Consensus 168 GareaAr~yAe~Aa~~Ap~l~WA~~AtLe~r~~~gdWd~AlkLvd~~~~~~vie~~~aeR~rAvLLtAkA~s~ldadp~~ 247 (531)
T COG3898 168 GAREAARHYAERAAEKAPQLPWAARATLEARCAAGDWDGALKLVDAQRAAKVIEKDVAERSRAVLLTAKAMSLLDADPAS 247 (531)
T ss_pred ccHHHHHHHHHHHHhhccCCchHHHHHHHHHHhcCChHHHHHHHHHHHHHHhhchhhHHHHHHHHHHHHHHHHhcCChHH
Confidence 999999999999999999999999888888999999999999988765532 222210 111111221 122456888
Q ss_pred HHHHHHHHHHHhcCCCCCcHHHHHHHHHHHHhcCCHHHHHHHHHHhhccCCchhHhHHHHHHHHHHHcCCcHHHHHHHHH
Q 003563 224 TLQHIEHAQIVRFSGKELPLKLKVKAGICYLRLGNMEKAEILFADLQWKNAIDHADLITEVADTLMSLGHSNSALKYYHF 303 (810)
Q Consensus 224 A~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~ 303 (810)
|...-.++.++ .+.....-...+..+++.|+..++-.+++.+-+..| +++ ++..|....--+.++.-+++
T Consensus 248 Ar~~A~~a~KL----~pdlvPaav~AAralf~d~~~rKg~~ilE~aWK~eP--HP~----ia~lY~~ar~gdta~dRlkR 317 (531)
T COG3898 248 ARDDALEANKL----APDLVPAAVVAARALFRDGNLRKGSKILETAWKAEP--HPD----IALLYVRARSGDTALDRLKR 317 (531)
T ss_pred HHHHHHHHhhc----CCccchHHHHHHHHHHhccchhhhhhHHHHHHhcCC--ChH----HHHHHHHhcCCCcHHHHHHH
Confidence 99998999888 667777777889999999999999999999988776 444 33444444444455555554
Q ss_pred HHhc--cCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHhhcCCCHHHHHHHHHHHHHc-CCHHHHHHhcCCCCCC
Q 003563 304 LETN--AGTDNGYLYLKLAECYLSLKERAHAIMFFYKALDRFEDNIDARLTLASLLLEE-AKEEEAITLLSPPKDL 376 (810)
Q Consensus 304 ~~~~--~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~-g~~~~A~~~~~~a~~~ 376 (810)
+..+ -.|++.+..+..+.....-|++..|..--+.+....|.. .++..|+.+-... |+-.++...+-+++..
T Consensus 318 a~~L~slk~nnaes~~~va~aAlda~e~~~ARa~Aeaa~r~~pre-s~~lLlAdIeeAetGDqg~vR~wlAqav~A 392 (531)
T COG3898 318 AKKLESLKPNNAESSLAVAEAALDAGEFSAARAKAEAAAREAPRE-SAYLLLADIEEAETGDQGKVRQWLAQAVKA 392 (531)
T ss_pred HHHHHhcCccchHHHHHHHHHHHhccchHHHHHHHHHHhhhCchh-hHHHHHHHHHhhccCchHHHHHHHHHHhcC
Confidence 4322 378999999999999999999999999999999999864 5677788887766 9999999999888764
No 180
>PF09295 ChAPs: ChAPs (Chs5p-Arf1p-binding proteins); InterPro: IPR015374 ChAPs (Chs5p-Arf1p-binding proteins) are required for the export of specialised cargo from the Golgi. They physically interact with Chs3, Chs5 and the small GTPase Arf1, and they also form interactions with each other [].
Probab=98.68 E-value=5.6e-07 Score=92.73 Aligned_cols=153 Identities=16% Similarity=0.161 Sum_probs=108.9
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChH--HHHHHHHHHHHcCChHHHHHHHHHHHhcCCCCHHHHHHHHHHHH
Q 003563 35 KMLGEASLQYAYGNFEQAISLLKEVVRLSPNLPE--TYNTLGLAHSALGNHKSAFDFYVIAAHLSPKDSALWKQLLTFAV 112 (810)
Q Consensus 35 ~~l~~a~~~~~~g~~~~A~~~~~~~l~~~p~~~~--~~~~l~~~~~~~g~~~~A~~~~~~a~~~~p~~~~~~~~la~~~~ 112 (810)
.++..+..++..|.--.+-.... .|.... .--.+-.++...++++.|+..+++..+.+|+ +...++.++.
T Consensus 140 ~fi~~~~~~~~~G~~lG~~~~i~-----~~t~~~NyLv~~Ll~~l~~t~~~~~ai~lle~L~~~~pe---v~~~LA~v~l 211 (395)
T PF09295_consen 140 NFIKLFPKLFERGWKLGSDPEIQ-----VPTIVNNYLVDTLLKYLSLTQRYDEAIELLEKLRERDPE---VAVLLARVYL 211 (395)
T ss_pred HHHHHHHHHhhcccccCCCCccC-----CCCCcchHHHHHHHHHHhhcccHHHHHHHHHHHHhcCCc---HHHHHHHHHH
Confidence 35555566666665443322111 133222 2233344455667888888888887776654 5666788888
Q ss_pred HcCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCChHHHHHHH
Q 003563 113 QKGDTAQAMYYIRQAIRAEPKDISLRIHLASFYVEIGDYEKAAESYEQIQKLFPDNVDATKTGAQLFLKCGQTARSIGIL 192 (810)
Q Consensus 113 ~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~~ 192 (810)
..++..+|+..+.+++...|.+...+...+..+...++++.|+.+.+++....|++...|..|+.+|...|+++.|+..+
T Consensus 212 ~~~~E~~AI~ll~~aL~~~p~d~~LL~~Qa~fLl~k~~~~lAL~iAk~av~lsP~~f~~W~~La~~Yi~~~d~e~ALlaL 291 (395)
T PF09295_consen 212 LMNEEVEAIRLLNEALKENPQDSELLNLQAEFLLSKKKYELALEIAKKAVELSPSEFETWYQLAECYIQLGDFENALLAL 291 (395)
T ss_pred hcCcHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCchhHHHHHHHHHHHHhcCCHHHHHHHH
Confidence 88888888888888888888888888888888888888888888888888888888888888888888888888888776
Q ss_pred HHH
Q 003563 193 EEY 195 (810)
Q Consensus 193 ~~~ 195 (810)
+.+
T Consensus 292 Ns~ 294 (395)
T PF09295_consen 292 NSC 294 (395)
T ss_pred hcC
Confidence 654
No 181
>KOG2300 consensus Uncharacterized conserved protein [Function unknown]
Probab=98.67 E-value=0.00039 Score=70.50 Aligned_cols=122 Identities=14% Similarity=0.150 Sum_probs=76.2
Q ss_pred HHHHHHHHHHHhhhcHHHHHHHHHHHHhhhhccCC-hhHHHHHHHhhhhhhccccCCchhHHHHHHHHHhCCCChhHhHH
Q 003563 533 CLIIDLCKALASLQRYEEASEIINLSMRLAYNILP-LEKKEELRSLGAKMAYDSTDPNHGFDCAKYILQLHPYSLSAWNC 611 (810)
Q Consensus 533 ~~~~~~~~~~~~~~~~~eA~~~~~~al~~~~~~~~-~~~~~~l~~~~~~~~~~~~~~~~a~~~~r~~~~~~p~~~~~~~~ 611 (810)
-+.+++|.+|.+.|+.++-.++++..--.+.+... .--...+.++.+..++..+++.+|....|+.++.. +..-.|-
T Consensus 405 ~~nlnlAi~YL~~~~~ed~y~~ld~i~p~nt~s~ssq~l~a~~~~v~glfaf~qn~lnEaK~~l~e~Lkma--naed~~r 482 (629)
T KOG2300|consen 405 FCNLNLAISYLRIGDAEDLYKALDLIGPLNTNSLSSQRLEASILYVYGLFAFKQNDLNEAKRFLRETLKMA--NAEDLNR 482 (629)
T ss_pred HHHHhHHHHHHHhccHHHHHHHHHhcCCCCCCcchHHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHhhc--chhhHHH
Confidence 45567888999988887776666554321111111 11233455666777788899999999888887653 1111111
Q ss_pred HHHHHHhhcccccccchhhHHHHHHHHhcCCCCCchhhhcchhhhccchHHHHHHHHHHHhhC---CCChHHHHHHHH
Q 003563 612 YYKVLSRMGKINSKHSKHSKFIRYLRAKYKDCVPPIIISGHQFTMASHHQDAARCYLEAYKLL---PENPLINLCVGS 686 (810)
Q Consensus 612 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~g~~~~~~~~~~~Ai~~y~~a~~~~---p~~p~~~l~l~~ 686 (810)
+ . ...++++||++...|+..++-+.-.-+.++. ||-|......++
T Consensus 483 L------------------------~------a~~LvLLs~v~lslgn~~es~nmvrpamqlAkKi~Di~vqLws~si 530 (629)
T KOG2300|consen 483 L------------------------T------ACSLVLLSHVFLSLGNTVESRNMVRPAMQLAKKIPDIPVQLWSSSI 530 (629)
T ss_pred H------------------------H------HHHHHHHHHHHHHhcchHHHHhccchHHHHHhcCCCchHHHHHHHH
Confidence 1 1 1125677999999999999988888777664 555555555443
No 182
>PF09295 ChAPs: ChAPs (Chs5p-Arf1p-binding proteins); InterPro: IPR015374 ChAPs (Chs5p-Arf1p-binding proteins) are required for the export of specialised cargo from the Golgi. They physically interact with Chs3, Chs5 and the small GTPase Arf1, and they also form interactions with each other [].
Probab=98.67 E-value=6.3e-07 Score=92.33 Aligned_cols=122 Identities=15% Similarity=0.246 Sum_probs=105.6
Q ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCC
Q 003563 105 KQLLTFAVQKGDTAQAMYYIRQAIRAEPKDISLRIHLASFYVEIGDYEKAAESYEQIQKLFPDNVDATKTGAQLFLKCGQ 184 (810)
Q Consensus 105 ~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~ 184 (810)
-.+...+...++++.|+..+++..+.+|+ +...++.++...++..+|++.+.++++..|.+...+...+..+...++
T Consensus 173 ~~Ll~~l~~t~~~~~ai~lle~L~~~~pe---v~~~LA~v~l~~~~E~~AI~ll~~aL~~~p~d~~LL~~Qa~fLl~k~~ 249 (395)
T PF09295_consen 173 DTLLKYLSLTQRYDEAIELLEKLRERDPE---VAVLLARVYLLMNEEVEAIRLLNEALKENPQDSELLNLQAEFLLSKKK 249 (395)
T ss_pred HHHHHHHhhcccHHHHHHHHHHHHhcCCc---HHHHHHHHHHhcCcHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhcCC
Confidence 34555666678899999999998887764 566788999889999999999999999999999999999999999999
Q ss_pred hHHHHHHHHHHHhhCCCCCChHHHHHHHHHHHHcCCHHHHHHHHHHH
Q 003563 185 TARSIGILEEYLKVHPSDADLSVIDLLVAILMENNAYEKTLQHIEHA 231 (810)
Q Consensus 185 ~~~A~~~~~~~l~~~p~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~ 231 (810)
++.|+.+.+++....|++.. .|..|+.+|...|+++.|+..++.+
T Consensus 250 ~~lAL~iAk~av~lsP~~f~--~W~~La~~Yi~~~d~e~ALlaLNs~ 294 (395)
T PF09295_consen 250 YELALEIAKKAVELSPSEFE--TWYQLAECYIQLGDFENALLALNSC 294 (395)
T ss_pred HHHHHHHHHHHHHhCchhHH--HHHHHHHHHHhcCCHHHHHHHHhcC
Confidence 99999999999999998876 7899999999999999999888754
No 183
>KOG1914 consensus mRNA cleavage and polyadenylation factor I complex, subunit RNA14 [RNA processing and modification]
Probab=98.66 E-value=0.00018 Score=73.98 Aligned_cols=372 Identities=12% Similarity=0.065 Sum_probs=201.8
Q ss_pred CCCHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCCCHHHHHHH
Q 003563 28 KLSPGVTKMLGEASLQYAYGNFEQAISLLKEVVRLSPNLPETYNTLGLAHSALGNHKSAFDFYVIAAHLSPKDSALWKQL 107 (810)
Q Consensus 28 ~~~~~~~~~l~~a~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~p~~~~~~~~l 107 (810)
..|.++..+......+-.+ -+++....+++.+...|..+.+|.......+...+++.-...|.+++...- +.+.|...
T Consensus 15 ~nP~di~sw~~lire~qt~-~~~~~R~~YEq~~~~FP~s~r~W~~yi~~El~skdfe~VEkLF~RCLvkvL-nlDLW~lY 92 (656)
T KOG1914|consen 15 ENPYDIDSWSQLIREAQTQ-PIDKVRETYEQLVNVFPSSPRAWKLYIERELASKDFESVEKLFSRCLVKVL-NLDLWKLY 92 (656)
T ss_pred cCCccHHHHHHHHHHHccC-CHHHHHHHHHHHhccCCCCcHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHh-hHhHHHHH
Confidence 4455666666655544444 888888888888888888888888888888888888888888888775432 35555533
Q ss_pred -HHHHHHcCCHHHHHHH----HHHHHH---cCCCCHHHHHHHHHHHH---------HcCCHHHHHHHHHHHHHhCCCCHH
Q 003563 108 -LTFAVQKGDTAQAMYY----IRQAIR---AEPKDISLRIHLASFYV---------EIGDYEKAAESYEQIQKLFPDNVD 170 (810)
Q Consensus 108 -a~~~~~~g~~~~A~~~----~~~al~---~~p~~~~~~~~la~~~~---------~~g~~~~A~~~~~~~l~~~p~~~~ 170 (810)
-.+-...|+...+... |+-++. .++.....|...+..+. ++.+.+.-.+.|++++..--.+.+
T Consensus 93 l~YVR~~~~~~~~~r~~m~qAy~f~l~kig~di~s~siW~eYi~FL~~vea~gk~ee~QRI~~vRriYqral~tPm~nlE 172 (656)
T KOG1914|consen 93 LSYVRETKGKLFGYREKMVQAYDFALEKIGMDIKSYSIWDEYINFLEGVEAVGKYEENQRITAVRRIYQRALVTPMHNLE 172 (656)
T ss_pred HHHHHHHccCcchHHHHHHHHHHHHHHHhccCcccchhHHHHHHHHHcccccccHHHHHHHHHHHHHHHHHhcCccccHH
Confidence 3344444555444433 333433 23444555555544432 233556667788888764333321
Q ss_pred -HHHH-----------HHH--HHHHcCChHHHHHHHHHHHhh-------CCC----CCC---------------------
Q 003563 171 -ATKT-----------GAQ--LFLKCGQTARSIGILEEYLKV-------HPS----DAD--------------------- 204 (810)
Q Consensus 171 -~~~~-----------la~--~~~~~g~~~~A~~~~~~~l~~-------~p~----~~~--------------------- 204 (810)
.|.. .|. +--....|..|...+++.... +|. ...
T Consensus 173 kLW~DY~~fE~~IN~~tarK~i~e~s~~Ym~AR~~~qel~~lt~GL~r~~~~vp~~~T~~e~~qv~~W~n~I~wEksNpL 252 (656)
T KOG1914|consen 173 KLWKDYEAFEQEINIITARKFIGERSPEYMNARRVYQELQNLTRGLNRNAPAVPPKGTKDEIQQVELWKNWIKWEKSNPL 252 (656)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhCHHHHHHHHHHHHHHHHHhhhcccCCCCCCCCChHHHHHHHHHHHHHHHHhcCCc
Confidence 1111 111 111222344444444433221 010 000
Q ss_pred --------------------------hHHHHHHHHHHHHcCC--------------HHHHHHHHHHHHHHhcCCCCCcHH
Q 003563 205 --------------------------LSVIDLLVAILMENNA--------------YEKTLQHIEHAQIVRFSGKELPLK 244 (810)
Q Consensus 205 --------------------------~~~~~~la~~~~~~g~--------------~~~A~~~~~~~~~~~~~~~~~~~~ 244 (810)
+.+|+..+..+...++ .+++..++++++.... .....
T Consensus 253 ~t~~~~~~~~Rv~yayeQ~ll~l~~~peiWy~~s~yl~~~s~l~~~~~d~~~a~~~t~e~~~~yEr~I~~l~---~~~~~ 329 (656)
T KOG1914|consen 253 RTLDGTMLTRRVMYAYEQCLLYLGYHPEIWYDYSMYLIEISDLLTEKGDVPDAKSLTDEAASIYERAIEGLL---KENKL 329 (656)
T ss_pred ccccccHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhhHHHHHhcccccchhhHHHHHHHHHHHHHHHH---HHHHH
Confidence 0122222222222222 3344444444443311 11222
Q ss_pred HHHHHHHHHHhcC---CHHHHHHHHHHhhccCCchhHhHHHHHHHHHHHcCCcHHHHHHHHHHHhccCCCCHHHHHHHHH
Q 003563 245 LKVKAGICYLRLG---NMEKAEILFADLQWKNAIDHADLITEVADTLMSLGHSNSALKYYHFLETNAGTDNGYLYLKLAE 321 (810)
Q Consensus 245 ~~~~la~~~~~~g---~~~~A~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~la~ 321 (810)
+++.++..-...- +.+....++++++.....+-.-++..+-....+..-...|..+|.++-+. ......++..-|.
T Consensus 330 Ly~~~a~~eE~~~~~n~~~~~~~~~~~ll~~~~~~~tLv~~~~mn~irR~eGlkaaR~iF~kaR~~-~r~~hhVfVa~A~ 408 (656)
T KOG1914|consen 330 LYFALADYEESRYDDNKEKKVHEIYNKLLKIEDIDLTLVYCQYMNFIRRAEGLKAARKIFKKARED-KRTRHHVFVAAAL 408 (656)
T ss_pred HHHHHHhhHHHhcccchhhhhHHHHHHHHhhhccCCceehhHHHHHHHHhhhHHHHHHHHHHHhhc-cCCcchhhHHHHH
Confidence 2222222222111 24444455555544332222334555555555566677778888777754 2222233333333
Q ss_pred H-HHHccCHHHHHHHHHHHHhhcCCCHHHHHHHHHHHHHcCCHHHHHHhcCCCCCC--CcccCCCCCCChhhhHHHHHHH
Q 003563 322 C-YLSLKERAHAIMFFYKALDRFEDNIDARLTLASLLLEEAKEEEAITLLSPPKDL--DSLDMNSDKSNPWWLNEKIIMK 398 (810)
Q Consensus 322 ~-~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~--~~~~~~~~~~~~~~~~~~~~~~ 398 (810)
+ |...++.+-|...|+-.+...++.+..-......+...|+-..|..+|++++.. .++. ..+++..
T Consensus 409 mEy~cskD~~~AfrIFeLGLkkf~d~p~yv~~YldfL~~lNdd~N~R~LFEr~l~s~l~~~k-----------s~~Iw~r 477 (656)
T KOG1914|consen 409 MEYYCSKDKETAFRIFELGLKKFGDSPEYVLKYLDFLSHLNDDNNARALFERVLTSVLSADK-----------SKEIWDR 477 (656)
T ss_pred HHHHhcCChhHHHHHHHHHHHhcCCChHHHHHHHHHHHHhCcchhHHHHHHHHHhccCChhh-----------hHHHHHH
Confidence 2 456788999999999999999999998888889999999999999999988876 2221 1234445
Q ss_pred HHHHHHhcCCchhHHhhh
Q 003563 399 LCHIYRAKGMPEDFVDAI 416 (810)
Q Consensus 399 la~~~~~~g~~~~A~~~~ 416 (810)
.-..-..-|+...+++.-
T Consensus 478 ~l~yES~vGdL~si~~le 495 (656)
T KOG1914|consen 478 MLEYESNVGDLNSILKLE 495 (656)
T ss_pred HHHHHHhcccHHHHHHHH
Confidence 544445556655554433
No 184
>KOG4648 consensus Uncharacterized conserved protein, contains LRR repeats [Function unknown]
Probab=98.66 E-value=2.3e-08 Score=95.44 Aligned_cols=100 Identities=18% Similarity=0.144 Sum_probs=49.2
Q ss_pred HHHHHHHcCChHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHcCCHH
Q 003563 73 LGLAHSALGNHKSAFDFYVIAAHLSPKDSALWKQLLTFAVQKGDTAQAMYYIRQAIRAEPKDISLRIHLASFYVEIGDYE 152 (810)
Q Consensus 73 l~~~~~~~g~~~~A~~~~~~a~~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~ 152 (810)
.|.-|+.+|+|++|+.+|.+++..+|.++..+.+.|.+|+++..+..|..-+..++.++.....++...+.+-..+|...
T Consensus 103 ~GN~yFKQgKy~EAIDCYs~~ia~~P~NpV~~~NRA~AYlk~K~FA~AE~DC~~AiaLd~~Y~KAYSRR~~AR~~Lg~~~ 182 (536)
T KOG4648|consen 103 RGNTYFKQGKYEEAIDCYSTAIAVYPHNPVYHINRALAYLKQKSFAQAEEDCEAAIALDKLYVKAYSRRMQARESLGNNM 182 (536)
T ss_pred hhhhhhhccchhHHHHHhhhhhccCCCCccchhhHHHHHHHHHHHHHHHHhHHHHHHhhHHHHHHHHHHHHHHHHHhhHH
Confidence 34444444445555555544444444444444444444444444444444444444444444444445555555555555
Q ss_pred HHHHHHHHHHHhCCCCHHHH
Q 003563 153 KAAESYEQIQKLFPDNVDAT 172 (810)
Q Consensus 153 ~A~~~~~~~l~~~p~~~~~~ 172 (810)
+|.+-++.++.+.|++.+..
T Consensus 183 EAKkD~E~vL~LEP~~~ELk 202 (536)
T KOG4648|consen 183 EAKKDCETVLALEPKNIELK 202 (536)
T ss_pred HHHHhHHHHHhhCcccHHHH
Confidence 55555555555555444433
No 185
>PF12688 TPR_5: Tetratrico peptide repeat
Probab=98.66 E-value=8.1e-07 Score=74.89 Aligned_cols=95 Identities=22% Similarity=0.257 Sum_probs=53.8
Q ss_pred HHHHHHHHHHHHcCChHHHHHHHHHHHhcCCCC---HHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCC---CHHHHHHH
Q 003563 68 ETYNTLGLAHSALGNHKSAFDFYVIAAHLSPKD---SALWKQLLTFAVQKGDTAQAMYYIRQAIRAEPK---DISLRIHL 141 (810)
Q Consensus 68 ~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~p~~---~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~---~~~~~~~l 141 (810)
.+++.+|.++-..|+.++|+.+|++++...... ..++..+|..+...|++++|+..+++++...|+ +..+...+
T Consensus 2 ~~~~~~A~a~d~~G~~~~Ai~~Y~~Al~~gL~~~~~~~a~i~lastlr~LG~~deA~~~L~~~~~~~p~~~~~~~l~~f~ 81 (120)
T PF12688_consen 2 RALYELAWAHDSLGREEEAIPLYRRALAAGLSGADRRRALIQLASTLRNLGRYDEALALLEEALEEFPDDELNAALRVFL 81 (120)
T ss_pred chHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCccccHHHHHHH
Confidence 345556666666666666666666665543332 344555566666666666666666666655555 44445555
Q ss_pred HHHHHHcCCHHHHHHHHHHHH
Q 003563 142 ASFYVEIGDYEKAAESYEQIQ 162 (810)
Q Consensus 142 a~~~~~~g~~~~A~~~~~~~l 162 (810)
+.++...|++++|+..+-.++
T Consensus 82 Al~L~~~gr~~eAl~~~l~~l 102 (120)
T PF12688_consen 82 ALALYNLGRPKEALEWLLEAL 102 (120)
T ss_pred HHHHHHCCCHHHHHHHHHHHH
Confidence 555566666666665555544
No 186
>KOG4234 consensus TPR repeat-containing protein [General function prediction only]
Probab=98.65 E-value=5.8e-07 Score=79.43 Aligned_cols=106 Identities=23% Similarity=0.200 Sum_probs=64.9
Q ss_pred HHHHHHHcCChHHHHHHHHHHHhcCCCCH-----HHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHH
Q 003563 73 LGLAHSALGNHKSAFDFYVIAAHLSPKDS-----ALWKQLLTFAVQKGDTAQAMYYIRQAIRAEPKDISLRIHLASFYVE 147 (810)
Q Consensus 73 l~~~~~~~g~~~~A~~~~~~a~~~~p~~~-----~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~ 147 (810)
-|.-++..|+|++|..-|..|+.+.|..+ ..+.+.|.+...++.++.|+....++++++|.+..++...|.+|.+
T Consensus 101 EGN~~F~ngdyeeA~skY~~Ale~cp~~~~e~rsIly~Nraaa~iKl~k~e~aI~dcsKaiel~pty~kAl~RRAeayek 180 (271)
T KOG4234|consen 101 EGNELFKNGDYEEANSKYQEALESCPSTSTEERSILYSNRAAALIKLRKWESAIEDCSKAIELNPTYEKALERRAEAYEK 180 (271)
T ss_pred HHHHhhhcccHHHHHHHHHHHHHhCccccHHHHHHHHhhhHHHHHHhhhHHHHHHHHHhhHhcCchhHHHHHHHHHHHHh
Confidence 35556666666666666666666655432 2344556666666666666666666666666666666666666666
Q ss_pred cCCHHHHHHHHHHHHHhCCCCHHHHHHHHHH
Q 003563 148 IGDYEKAAESYEQIQKLFPDNVDATKTGAQL 178 (810)
Q Consensus 148 ~g~~~~A~~~~~~~l~~~p~~~~~~~~la~~ 178 (810)
+..+++|++-|.++++.+|....+....+.+
T Consensus 181 ~ek~eealeDyKki~E~dPs~~ear~~i~rl 211 (271)
T KOG4234|consen 181 MEKYEEALEDYKKILESDPSRREAREAIARL 211 (271)
T ss_pred hhhHHHHHHHHHHHHHhCcchHHHHHHHHhc
Confidence 6666666666666666666655555444443
No 187
>PF14559 TPR_19: Tetratricopeptide repeat; PDB: 2R5S_A 3QDN_B 3QOU_A 3ASG_A 3ASD_A 3AS5_A 3AS4_A 3ASH_B 3FP3_A 3LCA_A ....
Probab=98.64 E-value=9e-08 Score=73.07 Aligned_cols=66 Identities=20% Similarity=0.291 Sum_probs=50.2
Q ss_pred HHcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCCCHHHHHHHHH
Q 003563 44 YAYGNFEQAISLLKEVVRLSPNLPETYNTLGLAHSALGNHKSAFDFYVIAAHLSPKDSALWKQLLT 109 (810)
Q Consensus 44 ~~~g~~~~A~~~~~~~l~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~p~~~~~~~~la~ 109 (810)
+..|++++|+..|++++..+|+++++++.+|.++...|++++|...+.+++..+|+++.++..++.
T Consensus 2 l~~~~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~l~~~~~~~~~~~~~~~l~a~ 67 (68)
T PF14559_consen 2 LKQGDYDEAIELLEKALQRNPDNPEARLLLAQCYLKQGQYDEAEELLERLLKQDPDNPEYQQLLAQ 67 (68)
T ss_dssp HHTTHHHHHHHHHHHHHHHTTTSHHHHHHHHHHHHHTT-HHHHHHHHHCCHGGGTTHHHHHHHHHH
T ss_pred hhccCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCcCHHHHHHHHhc
Confidence 567778888888888888888888888888888888888888888888888777777766666554
No 188
>COG1729 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=98.64 E-value=8.8e-07 Score=83.99 Aligned_cols=108 Identities=22% Similarity=0.272 Sum_probs=94.3
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC---ChHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCCC---HHHHHHH
Q 003563 34 TKMLGEASLQYAYGNFEQAISLLKEVVRLSPN---LPETYNTLGLAHSALGNHKSAFDFYVIAAHLSPKD---SALWKQL 107 (810)
Q Consensus 34 ~~~l~~a~~~~~~g~~~~A~~~~~~~l~~~p~---~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~p~~---~~~~~~l 107 (810)
..++..|..++..|+|.+|...|...++..|+ .+.+++.||.+++.+|+++.|...|..+..-.|++ +++++.+
T Consensus 142 ~~~Y~~A~~~~ksgdy~~A~~~F~~fi~~YP~s~~~~nA~yWLGe~~y~qg~y~~Aa~~f~~~~k~~P~s~KApdallKl 221 (262)
T COG1729 142 TKLYNAALDLYKSGDYAEAEQAFQAFIKKYPNSTYTPNAYYWLGESLYAQGDYEDAAYIFARVVKDYPKSPKAPDALLKL 221 (262)
T ss_pred hHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCcccchhHHHHHHHHHhcccchHHHHHHHHHHHhCCCCCCChHHHHHH
Confidence 44889999999999999999999999999888 46899999999999999999999999999877654 6888999
Q ss_pred HHHHHHcCCHHHHHHHHHHHHHcCCCCHHHHHHH
Q 003563 108 LTFAVQKGDTAQAMYYIRQAIRAEPKDISLRIHL 141 (810)
Q Consensus 108 a~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l 141 (810)
|.+...+|+.++|...|+++++..|+...+....
T Consensus 222 g~~~~~l~~~d~A~atl~qv~k~YP~t~aA~~Ak 255 (262)
T COG1729 222 GVSLGRLGNTDEACATLQQVIKRYPGTDAAKLAK 255 (262)
T ss_pred HHHHHHhcCHHHHHHHHHHHHHHCCCCHHHHHHH
Confidence 9999999999999999999999888887665433
No 189
>COG4700 Uncharacterized protein conserved in bacteria containing a divergent form of TPR repeats [Function unknown]
Probab=98.58 E-value=8.4e-06 Score=71.43 Aligned_cols=153 Identities=13% Similarity=0.085 Sum_probs=97.4
Q ss_pred HHcCChHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHH-cCCCCHHHHHHHHHHHHHcCCHHHHHH
Q 003563 78 SALGNHKSAFDFYVIAAHLSPKDSALWKQLLTFAVQKGDTAQAMYYIRQAIR-AEPKDISLRIHLASFYVEIGDYEKAAE 156 (810)
Q Consensus 78 ~~~g~~~~A~~~~~~a~~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~-~~p~~~~~~~~la~~~~~~g~~~~A~~ 156 (810)
.+.=|++....-..+.+...|.. .-.+.+|....+.|++.+|...|++++. +.-+++..+..++...+..+++..|..
T Consensus 67 ~q~ldP~R~~Rea~~~~~~ApTv-qnr~rLa~al~elGr~~EA~~hy~qalsG~fA~d~a~lLglA~Aqfa~~~~A~a~~ 145 (251)
T COG4700 67 QQKLDPERHLREATEELAIAPTV-QNRYRLANALAELGRYHEAVPHYQQALSGIFAHDAAMLLGLAQAQFAIQEFAAAQQ 145 (251)
T ss_pred HHhcChhHHHHHHHHHHhhchhH-HHHHHHHHHHHHhhhhhhhHHHHHHHhccccCCCHHHHHHHHHHHHhhccHHHHHH
Confidence 33344555555555555555542 3355667777777777777777777665 344566667777777777777777777
Q ss_pred HHHHHHHhCCC--CHHHHHHHHHHHHHcCChHHHHHHHHHHHhhCCCCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Q 003563 157 SYEQIQKLFPD--NVDATKTGAQLFLKCGQTARSIGILEEYLKVHPSDADLSVIDLLVAILMENNAYEKTLQHIEHAQIV 234 (810)
Q Consensus 157 ~~~~~l~~~p~--~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~ 234 (810)
.++++.+.+|. .++....+|..+...|.+.+|...|+.++...|+.. .....+..+..+|+.++|...+....+.
T Consensus 146 tLe~l~e~~pa~r~pd~~Ll~aR~laa~g~~a~Aesafe~a~~~ypg~~---ar~~Y~e~La~qgr~~ea~aq~~~v~d~ 222 (251)
T COG4700 146 TLEDLMEYNPAFRSPDGHLLFARTLAAQGKYADAESAFEVAISYYPGPQ---ARIYYAEMLAKQGRLREANAQYVAVVDT 222 (251)
T ss_pred HHHHHhhcCCccCCCCchHHHHHHHHhcCCchhHHHHHHHHHHhCCCHH---HHHHHHHHHHHhcchhHHHHHHHHHHHH
Confidence 77777776664 355666667777777777777777777777666533 4446667777777776666665555443
No 190
>KOG4648 consensus Uncharacterized conserved protein, contains LRR repeats [Function unknown]
Probab=98.58 E-value=3.3e-08 Score=94.35 Aligned_cols=101 Identities=20% Similarity=0.155 Sum_probs=95.0
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcC
Q 003563 104 WKQLLTFAVQKGDTAQAMYYIRQAIRAEPKDISLRIHLASFYVEIGDYEKAAESYEQIQKLFPDNVDATKTGAQLFLKCG 183 (810)
Q Consensus 104 ~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g 183 (810)
....|.-|+.+|.|++|+.||.+++..+|.++..+.+.|.+|+++..+..|..-+..++.++.....++...+..-..+|
T Consensus 100 iKE~GN~yFKQgKy~EAIDCYs~~ia~~P~NpV~~~NRA~AYlk~K~FA~AE~DC~~AiaLd~~Y~KAYSRR~~AR~~Lg 179 (536)
T KOG4648|consen 100 IKERGNTYFKQGKYEEAIDCYSTAIAVYPHNPVYHINRALAYLKQKSFAQAEEDCEAAIALDKLYVKAYSRRMQARESLG 179 (536)
T ss_pred HHHhhhhhhhccchhHHHHHhhhhhccCCCCccchhhHHHHHHHHHHHHHHHHhHHHHHHhhHHHHHHHHHHHHHHHHHh
Confidence 45678899999999999999999999999999999999999999999999999999999999888999999999999999
Q ss_pred ChHHHHHHHHHHHhhCCCCCC
Q 003563 184 QTARSIGILEEYLKVHPSDAD 204 (810)
Q Consensus 184 ~~~~A~~~~~~~l~~~p~~~~ 204 (810)
...+|.+.++.++++.|.+.+
T Consensus 180 ~~~EAKkD~E~vL~LEP~~~E 200 (536)
T KOG4648|consen 180 NNMEAKKDCETVLALEPKNIE 200 (536)
T ss_pred hHHHHHHhHHHHHhhCcccHH
Confidence 999999999999999998654
No 191
>COG4105 ComL DNA uptake lipoprotein [General function prediction only]
Probab=98.57 E-value=1.7e-05 Score=74.54 Aligned_cols=104 Identities=16% Similarity=0.187 Sum_probs=84.3
Q ss_pred ChHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCCC---HHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHH---HHH
Q 003563 66 LPETYNTLGLAHSALGNHKSAFDFYVIAAHLSPKD---SALWKQLLTFAVQKGDTAQAMYYIRQAIRAEPKDIS---LRI 139 (810)
Q Consensus 66 ~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~p~~---~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~---~~~ 139 (810)
.+..|+.-|...++.|++++|...|+.+....|.. ..+...++.++++.+++++|+...++-+...|.++. +++
T Consensus 33 p~~~LY~~g~~~L~~gn~~~A~~~fe~l~~~~p~s~~~~qa~l~l~yA~Yk~~~y~~A~~~~drFi~lyP~~~n~dY~~Y 112 (254)
T COG4105 33 PASELYNEGLTELQKGNYEEAIKYFEALDSRHPFSPYSEQAQLDLAYAYYKNGEYDLALAYIDRFIRLYPTHPNADYAYY 112 (254)
T ss_pred CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCcccHHHHHHHHHHHHhcccHHHHHHHHHHHHHhCCCCCChhHHHH
Confidence 46778888999999999999999999999888765 467888999999999999999999999999887764 466
Q ss_pred HHHHHHHHc--------CCHHHHHHHHHHHHHhCCCCH
Q 003563 140 HLASFYVEI--------GDYEKAAESYEQIQKLFPDNV 169 (810)
Q Consensus 140 ~la~~~~~~--------g~~~~A~~~~~~~l~~~p~~~ 169 (810)
..|.++... .-...|+..|+..+...|++.
T Consensus 113 lkgLs~~~~i~~~~rDq~~~~~A~~~f~~~i~ryPnS~ 150 (254)
T COG4105 113 LKGLSYFFQIDDVTRDQSAARAAFAAFKELVQRYPNSR 150 (254)
T ss_pred HHHHHHhccCCccccCHHHHHHHHHHHHHHHHHCCCCc
Confidence 667666542 224677888888888888864
No 192
>KOG3616 consensus Selective LIM binding factor [Transcription]
Probab=98.57 E-value=0.0012 Score=70.16 Aligned_cols=106 Identities=11% Similarity=0.056 Sum_probs=61.7
Q ss_pred cCCcHHHHHHHHHHHhccCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHhhcCCCHHHHHHHHHHHHHcCCHHHHHHhc
Q 003563 291 LGHSNSALKYYHFLETNAGTDNGYLYLKLAECYLSLKERAHAIMFFYKALDRFEDNIDARLTLASLLLEEAKEEEAITLL 370 (810)
Q Consensus 291 ~~~~~~A~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~ 370 (810)
..++.+|+.+++.+... ......|-.++.-|...|+++-|.+.|.++- ....-..+|-+.|+|++|.++-
T Consensus 745 akew~kai~ildniqdq--k~~s~yy~~iadhyan~~dfe~ae~lf~e~~--------~~~dai~my~k~~kw~da~kla 814 (1636)
T KOG3616|consen 745 AKEWKKAISILDNIQDQ--KTASGYYGEIADHYANKGDFEIAEELFTEAD--------LFKDAIDMYGKAGKWEDAFKLA 814 (1636)
T ss_pred hhhhhhhHhHHHHhhhh--ccccccchHHHHHhccchhHHHHHHHHHhcc--------hhHHHHHHHhccccHHHHHHHH
Confidence 34444444444433321 2233345566777778888888887776642 2223345677778888887776
Q ss_pred CCCCCCCcccCCCCCCChhhhHHHHHHHHHHHHHhcCCchhHHhhhhhh
Q 003563 371 SPPKDLDSLDMNSDKSNPWWLNEKIIMKLCHIYRAKGMPEDFVDAIFPL 419 (810)
Q Consensus 371 ~~a~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~ 419 (810)
++....... ...+...+.-+-+.|++.+|.+.|..+
T Consensus 815 ~e~~~~e~t-------------~~~yiakaedldehgkf~eaeqlyiti 850 (1636)
T KOG3616|consen 815 EECHGPEAT-------------ISLYIAKAEDLDEHGKFAEAEQLYITI 850 (1636)
T ss_pred HHhcCchhH-------------HHHHHHhHHhHHhhcchhhhhheeEEc
Confidence 655432221 134555666667778888777766544
No 193
>KOG2796 consensus Uncharacterized conserved protein [Function unknown]
Probab=98.55 E-value=2.7e-05 Score=72.20 Aligned_cols=150 Identities=19% Similarity=0.185 Sum_probs=126.3
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHhhccCCchhHhHHHHHHHHHHHcCCcHHHHHHHHHHHhcc-----CCCCHHHHHHH
Q 003563 245 LKVKAGICYLRLGNMEKAEILFADLQWKNAIDHADLITEVADTLMSLGHSNSALKYYHFLETNA-----GTDNGYLYLKL 319 (810)
Q Consensus 245 ~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~-----~~~~~~~~~~l 319 (810)
+.+.+..++...|.|.-....+.++++.+|+..+.....+|.+.++.|+.+.|..+|+.+.+.. ......+..+.
T Consensus 179 Vmy~~~~~llG~kEy~iS~d~~~~vi~~~~e~~p~L~s~Lgr~~MQ~GD~k~a~~yf~~vek~~~kL~~~q~~~~V~~n~ 258 (366)
T KOG2796|consen 179 VMYSMANCLLGMKEYVLSVDAYHSVIKYYPEQEPQLLSGLGRISMQIGDIKTAEKYFQDVEKVTQKLDGLQGKIMVLMNS 258 (366)
T ss_pred HHHHHHHHHhcchhhhhhHHHHHHHHHhCCcccHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHhhhhccchhHHHHhhh
Confidence 4566778888889999999999999998888889999999999999999999999998655331 23355567778
Q ss_pred HHHHHHccCHHHHHHHHHHHHhhcCCCHHHHHHHHHHHHHcCCHHHHHHhcCCCCCCCcccCCCCCCChhhhHHHHHHHH
Q 003563 320 AECYLSLKERAHAIMFFYKALDRFEDNIDARLTLASLLLEEAKEEEAITLLSPPKDLDSLDMNSDKSNPWWLNEKIIMKL 399 (810)
Q Consensus 320 a~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~l 399 (810)
+.++.-.+++..|...|.+++..+|.++.+..+.|.++.-.|+..+|++.++.++...|... ....+.+++
T Consensus 259 a~i~lg~nn~a~a~r~~~~i~~~D~~~~~a~NnKALcllYlg~l~DAiK~~e~~~~~~P~~~---------l~es~~~nL 329 (366)
T KOG2796|consen 259 AFLHLGQNNFAEAHRFFTEILRMDPRNAVANNNKALCLLYLGKLKDALKQLEAMVQQDPRHY---------LHESVLFNL 329 (366)
T ss_pred hhheecccchHHHHHHHhhccccCCCchhhhchHHHHHHHHHHHHHHHHHHHHHhccCCccc---------hhhhHHHHH
Confidence 88888899999999999999999999999999999999999999999999999999999754 234466666
Q ss_pred HHHH
Q 003563 400 CHIY 403 (810)
Q Consensus 400 a~~~ 403 (810)
..+|
T Consensus 330 ~tmy 333 (366)
T KOG2796|consen 330 TTMY 333 (366)
T ss_pred HHHH
Confidence 6655
No 194
>PF12688 TPR_5: Tetratrico peptide repeat
Probab=98.54 E-value=2.2e-06 Score=72.34 Aligned_cols=95 Identities=24% Similarity=0.225 Sum_probs=64.3
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCC---HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC---CHHHHHHH
Q 003563 102 ALWKQLLTFAVQKGDTAQAMYYIRQAIRAEPKD---ISLRIHLASFYVEIGDYEKAAESYEQIQKLFPD---NVDATKTG 175 (810)
Q Consensus 102 ~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~---~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~---~~~~~~~l 175 (810)
.+++.+|.++-..|+.++|+..|++++...... ..+++.+|..+..+|++++|+..+++.+...|+ +..+...+
T Consensus 2 ~~~~~~A~a~d~~G~~~~Ai~~Y~~Al~~gL~~~~~~~a~i~lastlr~LG~~deA~~~L~~~~~~~p~~~~~~~l~~f~ 81 (120)
T PF12688_consen 2 RALYELAWAHDSLGREEEAIPLYRRALAAGLSGADRRRALIQLASTLRNLGRYDEALALLEEALEEFPDDELNAALRVFL 81 (120)
T ss_pred chHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCccccHHHHHHH
Confidence 356667777777777777777777777654333 446667777777777777777777777776666 55666666
Q ss_pred HHHHHHcCChHHHHHHHHHHH
Q 003563 176 AQLFLKCGQTARSIGILEEYL 196 (810)
Q Consensus 176 a~~~~~~g~~~~A~~~~~~~l 196 (810)
+.++...|+.++|+..+-.++
T Consensus 82 Al~L~~~gr~~eAl~~~l~~l 102 (120)
T PF12688_consen 82 ALALYNLGRPKEALEWLLEAL 102 (120)
T ss_pred HHHHHHCCCHHHHHHHHHHHH
Confidence 677777777777776665554
No 195
>PF14559 TPR_19: Tetratricopeptide repeat; PDB: 2R5S_A 3QDN_B 3QOU_A 3ASG_A 3ASD_A 3AS5_A 3AS4_A 3ASH_B 3FP3_A 3LCA_A ....
Probab=98.54 E-value=2.5e-07 Score=70.63 Aligned_cols=61 Identities=30% Similarity=0.518 Sum_probs=27.4
Q ss_pred cCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHH
Q 003563 114 KGDTAQAMYYIRQAIRAEPKDISLRIHLASFYVEIGDYEKAAESYEQIQKLFPDNVDATKT 174 (810)
Q Consensus 114 ~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~ 174 (810)
.|++++|+..|++++..+|++..+++.+|.++...|++++|...+++++..+|+++.++..
T Consensus 4 ~~~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~l~~~~~~~~~~~~~~~l 64 (68)
T PF14559_consen 4 QGDYDEAIELLEKALQRNPDNPEARLLLAQCYLKQGQYDEAEELLERLLKQDPDNPEYQQL 64 (68)
T ss_dssp TTHHHHHHHHHHHHHHHTTTSHHHHHHHHHHHHHTT-HHHHHHHHHCCHGGGTTHHHHHHH
T ss_pred ccCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCcCHHHHHHH
Confidence 3444444444444444444444444444444444444444444444444444444433333
No 196
>PF13512 TPR_18: Tetratricopeptide repeat
Probab=98.52 E-value=3.4e-06 Score=72.08 Aligned_cols=85 Identities=19% Similarity=0.158 Sum_probs=71.2
Q ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC---ChHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCCCH---HHHH
Q 003563 32 GVTKMLGEASLQYAYGNFEQAISLLKEVVRLSPN---LPETYNTLGLAHSALGNHKSAFDFYVIAAHLSPKDS---ALWK 105 (810)
Q Consensus 32 ~~~~~l~~a~~~~~~g~~~~A~~~~~~~l~~~p~---~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~p~~~---~~~~ 105 (810)
....++..|...+..|+|++|++.|+.+....|. ...+...+|.+|+..|++++|+..+++-++++|.++ .+++
T Consensus 9 ~~~~ly~~a~~~l~~~~Y~~A~~~le~L~~ryP~g~ya~qAqL~l~yayy~~~~y~~A~a~~~rFirLhP~hp~vdYa~Y 88 (142)
T PF13512_consen 9 SPQELYQEAQEALQKGNYEEAIKQLEALDTRYPFGEYAEQAQLDLAYAYYKQGDYEEAIAAYDRFIRLHPTHPNVDYAYY 88 (142)
T ss_pred CHHHHHHHHHHHHHhCCHHHHHHHHHHHHhcCCCCcccHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCCCccHHHH
Confidence 3457889999999999999999999999988776 457889999999999999999999999999998775 4577
Q ss_pred HHHHHHHHcCC
Q 003563 106 QLLTFAVQKGD 116 (810)
Q Consensus 106 ~la~~~~~~g~ 116 (810)
..|.+++.+..
T Consensus 89 ~~gL~~~~~~~ 99 (142)
T PF13512_consen 89 MRGLSYYEQDE 99 (142)
T ss_pred HHHHHHHHHhh
Confidence 77777776654
No 197
>KOG3616 consensus Selective LIM binding factor [Transcription]
Probab=98.52 E-value=0.00095 Score=70.92 Aligned_cols=234 Identities=15% Similarity=0.143 Sum_probs=152.8
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHH------HHc----CCCCH-HHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHH
Q 003563 104 WKQLLTFAVQKGDTAQAMYYIRQA------IRA----EPKDI-SLRIHLASFYVEIGDYEKAAESYEQIQKLFPDNVDAT 172 (810)
Q Consensus 104 ~~~la~~~~~~g~~~~A~~~~~~a------l~~----~p~~~-~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~ 172 (810)
+-.-|.++.+..++++|++||++. +++ .|... ..-...|.-+...|+++.|+..|-.+-- .
T Consensus 664 ydkagdlfeki~d~dkale~fkkgdaf~kaielarfafp~evv~lee~wg~hl~~~~q~daainhfiea~~--------~ 735 (1636)
T KOG3616|consen 664 YDKAGDLFEKIHDFDKALECFKKGDAFGKAIELARFAFPEEVVKLEEAWGDHLEQIGQLDAAINHFIEANC--------L 735 (1636)
T ss_pred HHhhhhHHHHhhCHHHHHHHHHcccHHHHHHHHHHhhCcHHHhhHHHHHhHHHHHHHhHHHHHHHHHHhhh--------H
Confidence 445566667777788888887653 322 23222 2233456777788888888887765522 2
Q ss_pred HHHHHHHHHcCChHHHHHHHHHHHhhCCCCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhcCCCCCcHHHHHHHHHH
Q 003563 173 KTGAQLFLKCGQTARSIGILEEYLKVHPSDADLSVIDLLVAILMENNAYEKTLQHIEHAQIVRFSGKELPLKLKVKAGIC 252 (810)
Q Consensus 173 ~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~la~~ 252 (810)
...........++.+|+..++.......... -|-.++.-|...|+|+.|.+.|.++-.. ......
T Consensus 736 ~kaieaai~akew~kai~ildniqdqk~~s~---yy~~iadhyan~~dfe~ae~lf~e~~~~------------~dai~m 800 (1636)
T KOG3616|consen 736 IKAIEAAIGAKEWKKAISILDNIQDQKTASG---YYGEIADHYANKGDFEIAEELFTEADLF------------KDAIDM 800 (1636)
T ss_pred HHHHHHHhhhhhhhhhHhHHHHhhhhccccc---cchHHHHHhccchhHHHHHHHHHhcchh------------HHHHHH
Confidence 2333445566778888888877655443332 3556788888889999888888775322 123455
Q ss_pred HHhcCCHHHHHHHHHHhhccCCchhHhHHHHHHHHHHHcCCcHHHHHHHHHHHhccCCCCHHHHHHHHHHHHHccCHHHH
Q 003563 253 YLRLGNMEKAEILFADLQWKNAIDHADLITEVADTLMSLGHSNSALKYYHFLETNAGTDNGYLYLKLAECYLSLKERAHA 332 (810)
Q Consensus 253 ~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A 332 (810)
|-+.|++++|.++-.+.. .|......|...+.-+-+.|+|.+|.++| +....|+.+ ...|-+.|.++.-
T Consensus 801 y~k~~kw~da~kla~e~~--~~e~t~~~yiakaedldehgkf~eaeqly---iti~~p~~a------iqmydk~~~~ddm 869 (1636)
T KOG3616|consen 801 YGKAGKWEDAFKLAEECH--GPEATISLYIAKAEDLDEHGKFAEAEQLY---ITIGEPDKA------IQMYDKHGLDDDM 869 (1636)
T ss_pred HhccccHHHHHHHHHHhc--CchhHHHHHHHhHHhHHhhcchhhhhhee---EEccCchHH------HHHHHhhCcchHH
Confidence 778888998888888764 34445667777788888889999888887 333334332 2345666777766
Q ss_pred HHHHHHHHhhcCCC-HHHHHHHHHHHHHcCCHHHHHHhcCCCC
Q 003563 333 IMFFYKALDRFEDN-IDARLTLASLLLEEAKEEEAITLLSPPK 374 (810)
Q Consensus 333 ~~~~~~al~~~p~~-~~~~~~la~~~~~~g~~~~A~~~~~~a~ 374 (810)
+...++ ..|+. .+.+..++.-+...|+..+|...|-++-
T Consensus 870 irlv~k---~h~d~l~dt~~~f~~e~e~~g~lkaae~~flea~ 909 (1636)
T KOG3616|consen 870 IRLVEK---HHGDHLHDTHKHFAKELEAEGDLKAAEEHFLEAG 909 (1636)
T ss_pred HHHHHH---hChhhhhHHHHHHHHHHHhccChhHHHHHHHhhh
Confidence 655544 34443 4677888888888999988888776553
No 198
>COG4700 Uncharacterized protein conserved in bacteria containing a divergent form of TPR repeats [Function unknown]
Probab=98.52 E-value=2.2e-05 Score=68.86 Aligned_cols=153 Identities=18% Similarity=0.184 Sum_probs=123.6
Q ss_pred HHcCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHH-hCCCCHHHHHHHHHHHHHcCChHHHHH
Q 003563 112 VQKGDTAQAMYYIRQAIRAEPKDISLRIHLASFYVEIGDYEKAAESYEQIQK-LFPDNVDATKTGAQLFLKCGQTARSIG 190 (810)
Q Consensus 112 ~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~-~~p~~~~~~~~la~~~~~~g~~~~A~~ 190 (810)
.+.=+.+....-..+.++..|.. .-.+.+|....+.|++.+|...|++++. +..+++..+..+++..+..+++..|..
T Consensus 67 ~q~ldP~R~~Rea~~~~~~ApTv-qnr~rLa~al~elGr~~EA~~hy~qalsG~fA~d~a~lLglA~Aqfa~~~~A~a~~ 145 (251)
T COG4700 67 QQKLDPERHLREATEELAIAPTV-QNRYRLANALAELGRYHEAVPHYQQALSGIFAHDAAMLLGLAQAQFAIQEFAAAQQ 145 (251)
T ss_pred HHhcChhHHHHHHHHHHhhchhH-HHHHHHHHHHHHhhhhhhhHHHHHHHhccccCCCHHHHHHHHHHHHhhccHHHHHH
Confidence 33445555555666666666654 3578899999999999999999999886 577889999999999999999999999
Q ss_pred HHHHHHhhCCCCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhcCCCCCcHHHHHHHHHHHHhcCCHHHHHHHHHHhh
Q 003563 191 ILEEYLKVHPSDADLSVIDLLVAILMENNAYEKTLQHIEHAQIVRFSGKELPLKLKVKAGICYLRLGNMEKAEILFADLQ 270 (810)
Q Consensus 191 ~~~~~l~~~p~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~ 270 (810)
.+++..+.+|....+.....++..+...|++.+|...|+.++..+ .........+..+.++|+..+|...+..+.
T Consensus 146 tLe~l~e~~pa~r~pd~~Ll~aR~laa~g~~a~Aesafe~a~~~y-----pg~~ar~~Y~e~La~qgr~~ea~aq~~~v~ 220 (251)
T COG4700 146 TLEDLMEYNPAFRSPDGHLLFARTLAAQGKYADAESAFEVAISYY-----PGPQARIYYAEMLAKQGRLREANAQYVAVV 220 (251)
T ss_pred HHHHHhhcCCccCCCCchHHHHHHHHhcCCchhHHHHHHHHHHhC-----CCHHHHHHHHHHHHHhcchhHHHHHHHHHH
Confidence 999999998876555567789999999999999999999999873 345666777888889998888776666553
No 199
>PF13371 TPR_9: Tetratricopeptide repeat
Probab=98.48 E-value=8.8e-07 Score=68.67 Aligned_cols=63 Identities=30% Similarity=0.483 Sum_probs=30.6
Q ss_pred HHHHcCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHH
Q 003563 110 FAVQKGDTAQAMYYIRQAIRAEPKDISLRIHLASFYVEIGDYEKAAESYEQIQKLFPDNVDAT 172 (810)
Q Consensus 110 ~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~ 172 (810)
++...+++++|+.++++++..+|+++..+..+|.++..+|++.+|++.++++++..|+++.+.
T Consensus 4 ~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~~a~~~~~~g~~~~A~~~l~~~l~~~p~~~~~~ 66 (73)
T PF13371_consen 4 IYLQQEDYEEALEVLERALELDPDDPELWLQRARCLFQLGRYEEALEDLERALELSPDDPDAR 66 (73)
T ss_pred HHHhCCCHHHHHHHHHHHHHhCcccchhhHHHHHHHHHhccHHHHHHHHHHHHHHCCCcHHHH
Confidence 444444444444444444444444444444444444444444444444444444444444433
No 200
>PF13371 TPR_9: Tetratricopeptide repeat
Probab=98.47 E-value=8.7e-07 Score=68.70 Aligned_cols=63 Identities=24% Similarity=0.347 Sum_probs=34.6
Q ss_pred HHHHcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCCCHHHH
Q 003563 42 LQYAYGNFEQAISLLKEVVRLSPNLPETYNTLGLAHSALGNHKSAFDFYVIAAHLSPKDSALW 104 (810)
Q Consensus 42 ~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~p~~~~~~ 104 (810)
.++..+++++|+..+++++..+|+++..+..+|.++..+|++.+|...++++++..|+++.+.
T Consensus 4 ~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~~a~~~~~~g~~~~A~~~l~~~l~~~p~~~~~~ 66 (73)
T PF13371_consen 4 IYLQQEDYEEALEVLERALELDPDDPELWLQRARCLFQLGRYEEALEDLERALELSPDDPDAR 66 (73)
T ss_pred HHHhCCCHHHHHHHHHHHHHhCcccchhhHHHHHHHHHhccHHHHHHHHHHHHHHCCCcHHHH
Confidence 445555555555555555555555555555555555555555555555555555555554443
No 201
>COG1729 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=98.44 E-value=6.4e-06 Score=78.26 Aligned_cols=102 Identities=22% Similarity=0.217 Sum_probs=76.9
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCC---HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC---HHHHHHHH
Q 003563 103 LWKQLLTFAVQKGDTAQAMYYIRQAIRAEPKD---ISLRIHLASFYVEIGDYEKAAESYEQIQKLFPDN---VDATKTGA 176 (810)
Q Consensus 103 ~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~---~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~---~~~~~~la 176 (810)
-.+..|.-++..|+|..|...|..-++..|+. +.++++||.+++.+|+++.|...|..+.+..|++ +++++.+|
T Consensus 143 ~~Y~~A~~~~ksgdy~~A~~~F~~fi~~YP~s~~~~nA~yWLGe~~y~qg~y~~Aa~~f~~~~k~~P~s~KApdallKlg 222 (262)
T COG1729 143 KLYNAALDLYKSGDYAEAEQAFQAFIKKYPNSTYTPNAYYWLGESLYAQGDYEDAAYIFARVVKDYPKSPKAPDALLKLG 222 (262)
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCcccchhHHHHHHHHHhcccchHHHHHHHHHHHhCCCCCCChHHHHHHH
Confidence 36667777777777777777777777777765 5677778888888888888888887777776664 56777788
Q ss_pred HHHHHcCChHHHHHHHHHHHhhCCCCCC
Q 003563 177 QLFLKCGQTARSIGILEEYLKVHPSDAD 204 (810)
Q Consensus 177 ~~~~~~g~~~~A~~~~~~~l~~~p~~~~ 204 (810)
.+...+|+.++|...|+++++..|+...
T Consensus 223 ~~~~~l~~~d~A~atl~qv~k~YP~t~a 250 (262)
T COG1729 223 VSLGRLGNTDEACATLQQVIKRYPGTDA 250 (262)
T ss_pred HHHHHhcCHHHHHHHHHHHHHHCCCCHH
Confidence 8888888888888888888877777653
No 202
>KOG2471 consensus TPR repeat-containing protein [General function prediction only]
Probab=98.44 E-value=4.7e-05 Score=76.89 Aligned_cols=303 Identities=16% Similarity=0.099 Sum_probs=191.8
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHH-HHhCCC--------ChHHHHHHHHHHHHcCChHHHHHHHHHHHh-c------
Q 003563 33 VTKMLGEASLQYAYGNFEQAISLLKEV-VRLSPN--------LPETYNTLGLAHSALGNHKSAFDFYVIAAH-L------ 96 (810)
Q Consensus 33 ~~~~l~~a~~~~~~g~~~~A~~~~~~~-l~~~p~--------~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~-~------ 96 (810)
...++-+++.++..|++.+|.+++... +...|. .-..|.++|.++++.|.+.-+..+|.+|++ .
T Consensus 240 ~~~l~LKsq~eY~~gn~~kA~KlL~~sni~~~~g~~~T~q~~~cif~NNlGcIh~~~~~y~~~~~~F~kAL~N~c~qL~~ 319 (696)
T KOG2471|consen 240 SMALLLKSQLEYAHGNHPKAMKLLLVSNIHKEAGGTITPQLSSCIFNNNLGCIHYQLGCYQASSVLFLKALRNSCSQLRN 319 (696)
T ss_pred cHHHHHHHHHHHHhcchHHHHHHHHhcccccccCccccchhhhheeecCcceEeeehhhHHHHHHHHHHHHHHHHHHHhc
Confidence 346778899999999999999998764 333333 223578999999999999999999999995 1
Q ss_pred --C---------CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHcCC---HHHHHHHHHH--
Q 003563 97 --S---------PKDSALWKQLLTFAVQKGDTAQAMYYIRQAIRAEPKDISLRIHLASFYVEIGD---YEKAAESYEQ-- 160 (810)
Q Consensus 97 --~---------p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~---~~~A~~~~~~-- 160 (810)
. ...-+..++.|..+...|+.-.|.+||.++......+|..|..+|.+.....+ .++-.....+
T Consensus 320 g~~~~~~~tls~nks~eilYNcG~~~Lh~grPl~AfqCf~~av~vfh~nPrlWLRlAEcCima~~~~l~ee~~~s~s~~~ 399 (696)
T KOG2471|consen 320 GLKPAKTFTLSQNKSMEILYNCGLLYLHSGRPLLAFQCFQKAVHVFHRNPRLWLRLAECCIMALQKGLLEEGNSSLSRSE 399 (696)
T ss_pred cCCCCcceehhcccchhhHHhhhHHHHhcCCcHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHhhhhhhhhccCCccccc
Confidence 1 12457889999999999999999999999999999999999999998864322 1111111111
Q ss_pred ------------HH--Hh--CCCC------HHHHHHHHHHHHHcCCh-----HHHHHHHHHHHhh---------------
Q 003563 161 ------------IQ--KL--FPDN------VDATKTGAQLFLKCGQT-----ARSIGILEEYLKV--------------- 198 (810)
Q Consensus 161 ------------~l--~~--~p~~------~~~~~~la~~~~~~g~~-----~~A~~~~~~~l~~--------------- 198 (810)
.+ +. .+.. +..-..+|.++.+.+-+ ..--..+.-+...
T Consensus 400 i~~~vig~g~rr~~m~~~nt~~~~~qS~~~p~~slefA~vCLrnal~Ll~e~q~~~~~~~~a~ns~~~g~~~e~~e~~~t 479 (696)
T KOG2471|consen 400 IRVHVIGKGNRRQLMIEENTYVELAQSNQLPKLSLEFARVCLRNALYLLNEKQDLGSILSVAMNSTKEGSSSEHEEGNTT 479 (696)
T ss_pred ceeeeecccchhheeecccceeccccccCCCccccHHHHHHHHhhhhcCchhhcchhhhhhhccccccCCCCcCCCCCCC
Confidence 00 00 0000 11112222222221100 0000000000000
Q ss_pred -------------CC-CCCC---------hHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhcCCCCCcHHHHHH-----HH
Q 003563 199 -------------HP-SDAD---------LSVIDLLVAILMENNAYEKTLQHIEHAQIVRFSGKELPLKLKVK-----AG 250 (810)
Q Consensus 199 -------------~p-~~~~---------~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~-----la 250 (810)
.| ..+. ..++-..+.+-...|+.-.|+..-.+.++. +.-..++.. .|
T Consensus 480 ~~Sk~h~gd~~~~~p~ssp~~~e~leNm~~ai~A~~ayV~L~Lgd~i~AL~~a~kLLq~-----~~lS~~~kfLGHiYAa 554 (696)
T KOG2471|consen 480 TDSKEHKGDMSQEIPQSSPSAFEDLENMRQAIFANMAYVELELGDPIKALSAATKLLQL-----ADLSKIYKFLGHIYAA 554 (696)
T ss_pred cchhcCCCCCCccCCCCCcchHHHHHHHHHHHHHHHHHHHHHhcChhhHHHHHHHHHhh-----hhhhhHHHHHHHHHHH
Confidence 01 1111 123445666778889999999999988877 333344443 44
Q ss_pred HHHHhcCCHHHHHHHHHHhhccC-----------------------C--------------chhHhHHHHHHHHHHHcCC
Q 003563 251 ICYLRLGNMEKAEILFADLQWKN-----------------------A--------------IDHADLITEVADTLMSLGH 293 (810)
Q Consensus 251 ~~~~~~g~~~~A~~~~~~~~~~~-----------------------~--------------~~~~~~~~~la~~~~~~~~ 293 (810)
.+++.+.+..+|..++.--.-.. | .-....++++|.++.-+|+
T Consensus 555 EAL~lldr~seA~~HL~p~~~~~~~f~~~~n~~Df~~~~~~~e~l~~s~~r~~q~~~~sv~~Ar~v~~~nLa~a~alq~~ 634 (696)
T KOG2471|consen 555 EALCLLDRPSEAGAHLSPYLLGQDDFKLPYNQEDFDQWWKHTETLDPSTGRTRQSVFLSVEEARGVLFANLAAALALQGH 634 (696)
T ss_pred HHHHHcCChhhhhhccChhhcCCcccccccchhhhhhhhccccccCCcCCCCcccccCCHHHHhHHHHHHHHHHHHHhcc
Confidence 55567788888887765511000 0 0012357899999999999
Q ss_pred cHHHHHHHHHHHhccC-CCCHHHHHHHHHHHHHccCHHHHHHHHHHHH
Q 003563 294 SNSALKYYHFLETNAG-TDNGYLYLKLAECYLSLKERAHAIMFFYKAL 340 (810)
Q Consensus 294 ~~~A~~~~~~~~~~~~-~~~~~~~~~la~~~~~~g~~~~A~~~~~~al 340 (810)
+++|..++..+...-+ ...+.+....-.+-..+|+...|...+++.-
T Consensus 635 ~dqAk~ll~~aatl~hs~v~~~A~~lavyidL~~G~~q~al~~lk~~~ 682 (696)
T KOG2471|consen 635 HDQAKSLLTHAATLLHSLVNVQATVLAVYIDLMLGRSQDALARLKQCT 682 (696)
T ss_pred cHHHHHHHHHHHHhhhccccHHHHHHHHHHHHhcCCCcchHHHHHhcc
Confidence 9999999987766522 2355555555556678899999988887753
No 203
>KOG4234 consensus TPR repeat-containing protein [General function prediction only]
Probab=98.38 E-value=5.4e-06 Score=73.47 Aligned_cols=101 Identities=19% Similarity=0.211 Sum_probs=73.2
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCH-----HHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHH
Q 003563 104 WKQLLTFAVQKGDTAQAMYYIRQAIRAEPKDI-----SLRIHLASFYVEIGDYEKAAESYEQIQKLFPDNVDATKTGAQL 178 (810)
Q Consensus 104 ~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~-----~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~la~~ 178 (810)
+..-|.-++..|+|++|..-|..++...|..+ ..+.+.|.+..+++.++.|+....++++++|.+..++...|.+
T Consensus 98 lK~EGN~~F~ngdyeeA~skY~~Ale~cp~~~~e~rsIly~Nraaa~iKl~k~e~aI~dcsKaiel~pty~kAl~RRAea 177 (271)
T KOG4234|consen 98 LKKEGNELFKNGDYEEANSKYQEALESCPSTSTEERSILYSNRAAALIKLRKWESAIEDCSKAIELNPTYEKALERRAEA 177 (271)
T ss_pred HHHHHHHhhhcccHHHHHHHHHHHHHhCccccHHHHHHHHhhhHHHHHHhhhHHHHHHHHHhhHhcCchhHHHHHHHHHH
Confidence 44456667777777777777777777776543 2456677777777777777777777777777777777777777
Q ss_pred HHHcCChHHHHHHHHHHHhhCCCCCC
Q 003563 179 FLKCGQTARSIGILEEYLKVHPSDAD 204 (810)
Q Consensus 179 ~~~~g~~~~A~~~~~~~l~~~p~~~~ 204 (810)
|.++..+++|++.|.++++.+|....
T Consensus 178 yek~ek~eealeDyKki~E~dPs~~e 203 (271)
T KOG4234|consen 178 YEKMEKYEEALEDYKKILESDPSRRE 203 (271)
T ss_pred HHhhhhHHHHHHHHHHHHHhCcchHH
Confidence 77777777777777777777776653
No 204
>PF13512 TPR_18: Tetratricopeptide repeat
Probab=98.37 E-value=1.1e-05 Score=69.03 Aligned_cols=85 Identities=16% Similarity=0.071 Sum_probs=53.3
Q ss_pred ChHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCCC---HHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCH---HHHH
Q 003563 66 LPETYNTLGLAHSALGNHKSAFDFYVIAAHLSPKD---SALWKQLLTFAVQKGDTAQAMYYIRQAIRAEPKDI---SLRI 139 (810)
Q Consensus 66 ~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~p~~---~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~---~~~~ 139 (810)
.+..++.-|...+..|+|++|++.|+.+....|.. ..+...+|.+|+..|++++|+..+++.++++|.++ .+++
T Consensus 9 ~~~~ly~~a~~~l~~~~Y~~A~~~le~L~~ryP~g~ya~qAqL~l~yayy~~~~y~~A~a~~~rFirLhP~hp~vdYa~Y 88 (142)
T PF13512_consen 9 SPQELYQEAQEALQKGNYEEAIKQLEALDTRYPFGEYAEQAQLDLAYAYYKQGDYEEAIAAYDRFIRLHPTHPNVDYAYY 88 (142)
T ss_pred CHHHHHHHHHHHHHhCCHHHHHHHHHHHHhcCCCCcccHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCCCccHHHH
Confidence 34556666666667777777777776666665543 34566666666777777777777777666666554 3455
Q ss_pred HHHHHHHHcCC
Q 003563 140 HLASFYVEIGD 150 (810)
Q Consensus 140 ~la~~~~~~g~ 150 (810)
..|.++..+..
T Consensus 89 ~~gL~~~~~~~ 99 (142)
T PF13512_consen 89 MRGLSYYEQDE 99 (142)
T ss_pred HHHHHHHHHhh
Confidence 56655555544
No 205
>PF06552 TOM20_plant: Plant specific mitochondrial import receptor subunit TOM20; InterPro: IPR010547 This family consists of several plant specific mitochondrial import receptor subunit TOM20 (translocase of outer membrane 20 kDa subunit) proteins. Most mitochondrial proteins are encoded by the nuclear genome, and are synthesised in the cytosol. TOM20 is a general import receptor that binds to mitochondrial pre-sequences in the early step of protein import into the mitochondria [].; GO: 0045040 protein import into mitochondrial outer membrane, 0005742 mitochondrial outer membrane translocase complex; PDB: 1ZU2_A.
Probab=98.31 E-value=4e-06 Score=73.88 Aligned_cols=96 Identities=17% Similarity=0.217 Sum_probs=80.7
Q ss_pred hHHHHHHHHHHHhhCCCChHHHHHHHHHHHHHHhCccccchhHHHHHHHHHHHHhHhhcCCCchhhhhHHHHHHHhCh--
Q 003563 660 HQDAARCYLEAYKLLPENPLINLCVGSALINLALGFRLQNKHQCLAQGFAFLYNNLRLCEHSQEALYNIARACHHVGL-- 737 (810)
Q Consensus 660 ~~~Ai~~y~~a~~~~p~~p~~~l~l~~~~~~~~~~r~~~~r~~~~~q~~~~l~~y~~~~~~~~e~~ynlgr~~~~lg~-- 737 (810)
|+.|...|..++..+|.|+-.+..=|.+++..+.-++......++.+|++-+.+..++.|+..++++|+|.+|..+|.
T Consensus 7 FE~ark~aea~y~~nP~DadnL~~WG~ALLELAqfk~g~es~~miedAisK~eeAL~I~P~~hdAlw~lGnA~ts~A~l~ 86 (186)
T PF06552_consen 7 FEHARKKAEAAYAKNPLDADNLTNWGGALLELAQFKQGPESKKMIEDAISKFEEALKINPNKHDALWCLGNAYTSLAFLT 86 (186)
T ss_dssp HHHHHHHHHHHHHH-TT-HHHHHHHHHHHHHHHHHS-HHHHHHHHHHHHHHHHHHHHH-TT-HHHHHHHHHHHHHHHHH-
T ss_pred HHHHHHHHHHHHHhCcHhHHHHHHHHHHHHHHHhccCcchHHHHHHHHHHHHHHHHhcCCchHHHHHHHHHHHHHHHhhc
Confidence 688999999999999999999999999999988766656666799999999999999999999999999999998876
Q ss_pred ---------hhHHHHHHHHHhcccccc
Q 003563 738 ---------VSLAASYYEKVLAIKEKD 755 (810)
Q Consensus 738 ---------~~~Ai~~Y~~vL~~~~~~ 755 (810)
+.+|..||+++.+..|+|
T Consensus 87 ~d~~~A~~~F~kA~~~FqkAv~~~P~n 113 (186)
T PF06552_consen 87 PDTAEAEEYFEKATEYFQKAVDEDPNN 113 (186)
T ss_dssp --HHHHHHHHHHHHHHHHHHHHH-TT-
T ss_pred CChHHHHHHHHHHHHHHHHHHhcCCCc
Confidence 788999999999888763
No 206
>KOG4507 consensus Uncharacterized conserved protein, contains TPR repeats [Function unknown]
Probab=98.30 E-value=5.4e-05 Score=78.10 Aligned_cols=108 Identities=19% Similarity=0.189 Sum_probs=84.8
Q ss_pred HHHHHhcCCHHHHHHHHHHhhccCCchhHhHHHHHHHHHHHcCCcHHHHHHHHHHHhccCCCCHHHHHHHHHHHHHccCH
Q 003563 250 GICYLRLGNMEKAEILFADLQWKNAIDHADLITEVADTLMSLGHSNSALKYYHFLETNAGTDNGYLYLKLAECYLSLKER 329 (810)
Q Consensus 250 a~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~ 329 (810)
|..+...|+...|+.++..++...|.........+|.++.+.|-.-.|-.++.+++.. ....|-.++.+|..+..+.+.
T Consensus 614 glywr~~gn~~~a~~cl~~a~~~~p~~~~v~~v~la~~~~~~~~~~da~~~l~q~l~~-~~sepl~~~~~g~~~l~l~~i 692 (886)
T KOG4507|consen 614 GLYWRAVGNSTFAIACLQRALNLAPLQQDVPLVNLANLLIHYGLHLDATKLLLQALAI-NSSEPLTFLSLGNAYLALKNI 692 (886)
T ss_pred cceeeecCCcHHHHHHHHHHhccChhhhcccHHHHHHHHHHhhhhccHHHHHHHHHhh-cccCchHHHhcchhHHHHhhh
Confidence 3444556888888888888887777666667788888888888888888888888776 466777888888888888888
Q ss_pred HHHHHHHHHHHhhcCCCHHHHHHHHHHHH
Q 003563 330 AHAIMFFYKALDRFEDNIDARLTLASLLL 358 (810)
Q Consensus 330 ~~A~~~~~~al~~~p~~~~~~~~la~~~~ 358 (810)
+.|++.|+.++..+|+++.....|-.+-.
T Consensus 693 ~~a~~~~~~a~~~~~~~~~~~~~l~~i~c 721 (886)
T KOG4507|consen 693 SGALEAFRQALKLTTKCPECENSLKLIRC 721 (886)
T ss_pred HHHHHHHHHHHhcCCCChhhHHHHHHHHH
Confidence 88888888888888888877766655544
No 207
>PLN03098 LPA1 LOW PSII ACCUMULATION1; Provisional
Probab=98.24 E-value=1.8e-05 Score=81.03 Aligned_cols=69 Identities=20% Similarity=0.238 Sum_probs=54.8
Q ss_pred hCCCChHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCCCHHH---HHHHHHHHHHcCCHHHHHHHHHHHHHc
Q 003563 62 LSPNLPETYNTLGLAHSALGNHKSAFDFYVIAAHLSPKDSAL---WKQLLTFAVQKGDTAQAMYYIRQAIRA 130 (810)
Q Consensus 62 ~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~p~~~~~---~~~la~~~~~~g~~~~A~~~~~~al~~ 130 (810)
.+|+++.+++++|.+|...|++++|+..|+++++++|++.++ |+++|.+|..+|++++|+.+++++++.
T Consensus 70 ~dP~~a~a~~NLG~AL~~lGryeEAIa~f~rALeL~Pd~aeA~~A~yNLAcaya~LGr~dEAla~LrrALel 141 (453)
T PLN03098 70 ADVKTAEDAVNLGLSLFSKGRVKDALAQFETALELNPNPDEAQAAYYNKACCHAYREEGKKAADCLRTALRD 141 (453)
T ss_pred CCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Confidence 367778888888888888888888888888888888887754 788888888888888888888888775
No 208
>KOG1586 consensus Protein required for fusion of vesicles in vesicular transport, alpha-SNAP [Intracellular trafficking, secretion, and vesicular transport]
Probab=98.22 E-value=0.00066 Score=62.26 Aligned_cols=187 Identities=17% Similarity=0.136 Sum_probs=131.3
Q ss_pred CCCHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC----C--CChHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCCCH
Q 003563 28 KLSPGVTKMLGEASLQYAYGNFEQAISLLKEVVRLS----P--NLPETYNTLGLAHSALGNHKSAFDFYVIAAHLSPKDS 101 (810)
Q Consensus 28 ~~~~~~~~~l~~a~~~~~~g~~~~A~~~~~~~l~~~----p--~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~p~~~ 101 (810)
+.......+...|+.+-...+++.|-..|.++-... . +....|...+.||. .+++.+|..++++++++..+-.
T Consensus 29 k~eeAadl~~~Aan~yklaK~w~~AG~aflkaA~~h~k~~skhDaat~YveA~~cyk-k~~~~eAv~cL~~aieIyt~~G 107 (288)
T KOG1586|consen 29 KYEEAAELYERAANMYKLAKNWSAAGDAFLKAADLHLKAGSKHDAATTYVEAANCYK-KVDPEEAVNCLEKAIEIYTDMG 107 (288)
T ss_pred chHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHhcCCchhHHHHHHHHHHHhh-ccChHHHHHHHHHHHHHHHhhh
Confidence 334444445556777777888998888888875542 1 13445566666654 4599999999999998865433
Q ss_pred ------HHHHHHHHHHHHc-CCHHHHHHHHHHHHHcCCCC------HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC
Q 003563 102 ------ALWKQLLTFAVQK-GDTAQAMYYIRQAIRAEPKD------ISLRIHLASFYVEIGDYEKAAESYEQIQKLFPDN 168 (810)
Q Consensus 102 ------~~~~~la~~~~~~-g~~~~A~~~~~~al~~~p~~------~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~ 168 (810)
..+..+|.+|... .++++|+.+|+++-+..... ...+...+..-...++|.+|+..|+++....-++
T Consensus 108 rf~~aAk~~~~iaEiyEsdl~d~ekaI~~YE~Aae~yk~ees~ssANKC~lKvA~yaa~leqY~~Ai~iyeqva~~s~~n 187 (288)
T KOG1586|consen 108 RFTMAAKHHIEIAEIYESDLQDFEKAIAHYEQAAEYYKGEESVSSANKCLLKVAQYAAQLEQYSKAIDIYEQVARSSLDN 187 (288)
T ss_pred HHHHHHhhhhhHHHHHhhhHHHHHHHHHHHHHHHHHHcchhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccc
Confidence 2355788888765 88999999999988754332 2235666777788899999999999988776655
Q ss_pred H-------HHHHHHHHHHHHcCChHHHHHHHHHHHhhCCCCCChHHHHHHHHHH
Q 003563 169 V-------DATKTGAQLFLKCGQTARSIGILEEYLKVHPSDADLSVIDLLVAIL 215 (810)
Q Consensus 169 ~-------~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~~~la~~~ 215 (810)
+ +.++.-|.+++-..+.-.+...+++..+.+|...+.+-...+..+.
T Consensus 188 ~LLKys~KdyflkAgLChl~~~D~v~a~~ALeky~~~dP~F~dsREckflk~L~ 241 (288)
T KOG1586|consen 188 NLLKYSAKDYFLKAGLCHLCKADEVNAQRALEKYQELDPAFTDSRECKFLKDLL 241 (288)
T ss_pred hHHHhHHHHHHHHHHHHhHhcccHHHHHHHHHHHHhcCCcccccHHHHHHHHHH
Confidence 4 3345556777777888888888888888999877754444444443
No 209
>KOG4555 consensus TPR repeat-containing protein [Function unknown]
Probab=98.22 E-value=7.6e-05 Score=61.34 Aligned_cols=98 Identities=18% Similarity=0.165 Sum_probs=81.6
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCCC----HHHHHHHHHH
Q 003563 35 KMLGEASLQYAYGNFEQAISLLKEVVRLSPNLPETYNTLGLAHSALGNHKSAFDFYVIAAHLSPKD----SALWKQLLTF 110 (810)
Q Consensus 35 ~~l~~a~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~p~~----~~~~~~la~~ 110 (810)
.+-.+|..+...|+.+.|++.|.+++...|..+.+|.+.+..+.-+|+.++|++.+.+++++.... ..++...|.+
T Consensus 45 ~LEl~~valaE~g~Ld~AlE~F~qal~l~P~raSayNNRAQa~RLq~~~e~ALdDLn~AleLag~~trtacqa~vQRg~l 124 (175)
T KOG4555|consen 45 ELELKAIALAEAGDLDGALELFGQALCLAPERASAYNNRAQALRLQGDDEEALDDLNKALELAGDQTRTACQAFVQRGLL 124 (175)
T ss_pred HHHHHHHHHHhccchHHHHHHHHHHHHhcccchHhhccHHHHHHHcCChHHHHHHHHHHHHhcCccchHHHHHHHHHHHH
Confidence 344568888889999999999999999999999999999999999999999999999999886443 2457788888
Q ss_pred HHHcCCHHHHHHHHHHHHHcCC
Q 003563 111 AVQKGDTAQAMYYIRQAIRAEP 132 (810)
Q Consensus 111 ~~~~g~~~~A~~~~~~al~~~p 132 (810)
|..+|+.+.|..-|+.+.++..
T Consensus 125 yRl~g~dd~AR~DFe~AA~LGS 146 (175)
T KOG4555|consen 125 YRLLGNDDAARADFEAAAQLGS 146 (175)
T ss_pred HHHhCchHHHHHhHHHHHHhCC
Confidence 8888998988888888877654
No 210
>KOG0985 consensus Vesicle coat protein clathrin, heavy chain [Intracellular trafficking, secretion, and vesicular transport]
Probab=98.20 E-value=0.0012 Score=72.79 Aligned_cols=282 Identities=16% Similarity=0.105 Sum_probs=201.4
Q ss_pred HHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCHH
Q 003563 39 EASLQYAYGNFEQAISLLKEVVRLSPNLPETYNTLGLAHSALGNHKSAFDFYVIAAHLSPKDSALWKQLLTFAVQKGDTA 118 (810)
Q Consensus 39 ~a~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~p~~~~~~~~la~~~~~~g~~~ 118 (810)
-|.+....+-|++|..+|++. .-+..+... .....+..+.|.++.++. +.+..|..+|.+..+.|...
T Consensus 1054 ia~iai~~~LyEEAF~ifkkf----~~n~~A~~V---Lie~i~~ldRA~efAe~~-----n~p~vWsqlakAQL~~~~v~ 1121 (1666)
T KOG0985|consen 1054 IAEIAIENQLYEEAFAIFKKF----DMNVSAIQV---LIENIGSLDRAYEFAERC-----NEPAVWSQLAKAQLQGGLVK 1121 (1666)
T ss_pred HHHHHhhhhHHHHHHHHHHHh----cccHHHHHH---HHHHhhhHHHHHHHHHhh-----CChHHHHHHHHHHHhcCchH
Confidence 366677777788888777764 112222222 223456777777777664 56889999999999999999
Q ss_pred HHHHHHHHHHHcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHhh
Q 003563 119 QAMYYIRQAIRAEPKDISLRIHLASFYVEIGDYEKAAESYEQIQKLFPDNVDATKTGAQLFLKCGQTARSIGILEEYLKV 198 (810)
Q Consensus 119 ~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~ 198 (810)
+|++.|-++ +++..+.....+..+.|.|++-+.++..+.+... .+.+-..+...|.+.++..+-.+.+ .
T Consensus 1122 dAieSyika-----dDps~y~eVi~~a~~~~~~edLv~yL~MaRkk~~-E~~id~eLi~AyAkt~rl~elE~fi-----~ 1190 (1666)
T KOG0985|consen 1122 DAIESYIKA-----DDPSNYLEVIDVASRTGKYEDLVKYLLMARKKVR-EPYIDSELIFAYAKTNRLTELEEFI-----A 1190 (1666)
T ss_pred HHHHHHHhc-----CCcHHHHHHHHHHHhcCcHHHHHHHHHHHHHhhc-CccchHHHHHHHHHhchHHHHHHHh-----c
Confidence 999988765 5777888888999999999999999988876532 2333445556677777776654433 3
Q ss_pred CCCCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhcCCCCCcHHHHHHHHHHHHhcCCHHHHHHHHHHhhccCCchhH
Q 003563 199 HPSDADLSVIDLLVAILMENNAYEKTLQHIEHAQIVRFSGKELPLKLKVKAGICYLRLGNMEKAEILFADLQWKNAIDHA 278 (810)
Q Consensus 199 ~p~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~ 278 (810)
.|+... ....|.-++..|.|+.|.-.|..... +..++..+..+|+|..|...-+++ ...
T Consensus 1191 gpN~A~---i~~vGdrcf~~~~y~aAkl~y~~vSN------------~a~La~TLV~LgeyQ~AVD~aRKA------ns~ 1249 (1666)
T KOG0985|consen 1191 GPNVAN---IQQVGDRCFEEKMYEAAKLLYSNVSN------------FAKLASTLVYLGEYQGAVDAARKA------NST 1249 (1666)
T ss_pred CCCchh---HHHHhHHHhhhhhhHHHHHHHHHhhh------------HHHHHHHHHHHHHHHHHHHHhhhc------cch
Confidence 566554 55788888999999988887765533 356888888999999999988887 356
Q ss_pred hHHHHHHHHHHHcCCcHHHHHHHHHHHhccCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHhhcCCCHHHHHHHHHHHH
Q 003563 279 DLITEVADTLMSLGHSNSALKYYHFLETNAGTDNGYLYLKLAECYLSLKERAHAIMFFYKALDRFEDNIDARLTLASLLL 358 (810)
Q Consensus 279 ~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~ 358 (810)
..|.....++...+.+.-|.-+ ...---.++-+-.+...|...|-+++-+..++.++-+...+......||-+|.
T Consensus 1250 ktWK~VcfaCvd~~EFrlAQiC-----GL~iivhadeLeeli~~Yq~rGyFeElIsl~Ea~LGLERAHMgmfTELaiLYs 1324 (1666)
T KOG0985|consen 1250 KTWKEVCFACVDKEEFRLAQIC-----GLNIIVHADELEELIEYYQDRGYFEELISLLEAGLGLERAHMGMFTELAILYS 1324 (1666)
T ss_pred hHHHHHHHHHhchhhhhHHHhc-----CceEEEehHhHHHHHHHHHhcCcHHHHHHHHHhhhchhHHHHHHHHHHHHHHH
Confidence 7788888888887777666432 12112244455667778888999999999999999888878788888888886
Q ss_pred HcCCHHHHHHhc
Q 003563 359 EEAKEEEAITLL 370 (810)
Q Consensus 359 ~~g~~~~A~~~~ 370 (810)
+- ++++-.+.+
T Consensus 1325 ky-kp~km~EHl 1335 (1666)
T KOG0985|consen 1325 KY-KPEKMMEHL 1335 (1666)
T ss_pred hc-CHHHHHHHH
Confidence 54 344444433
No 211
>KOG4642 consensus Chaperone-dependent E3 ubiquitin protein ligase (contains TPR repeats) [Posttranslational modification, protein turnover, chaperones]
Probab=98.19 E-value=2.1e-05 Score=71.98 Aligned_cols=103 Identities=15% Similarity=0.196 Sum_probs=96.4
Q ss_pred CCCHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCCCHHHHHHH
Q 003563 28 KLSPGVTKMLGEASLQYAYGNFEQAISLLKEVVRLSPNLPETYNTLGLAHSALGNHKSAFDFYVIAAHLSPKDSALWKQL 107 (810)
Q Consensus 28 ~~~~~~~~~l~~a~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~p~~~~~~~~l 107 (810)
..++....+=.+|+.++....|..|+..|.++|.++|..+..|...+.|+++..+++.+.....++++++|+....++.+
T Consensus 5 ~~s~~a~qlkE~gnk~f~~k~y~~ai~~y~raI~~nP~~~~Y~tnralchlk~~~~~~v~~dcrralql~~N~vk~h~fl 84 (284)
T KOG4642|consen 5 EMSESAEQLKEQGNKCFIPKRYDDAIDCYSRAICINPTVASYYTNRALCHLKLKHWEPVEEDCRRALQLDPNLVKAHYFL 84 (284)
T ss_pred ccchHHHHHHhccccccchhhhchHHHHHHHHHhcCCCcchhhhhHHHHHHHhhhhhhhhhhHHHHHhcChHHHHHHHHH
Confidence 45666777788899999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHcCCHHHHHHHHHHHHHc
Q 003563 108 LTFAVQKGDTAQAMYYIRQAIRA 130 (810)
Q Consensus 108 a~~~~~~g~~~~A~~~~~~al~~ 130 (810)
|........+++|+..++++..+
T Consensus 85 g~~~l~s~~~~eaI~~Lqra~sl 107 (284)
T KOG4642|consen 85 GQWLLQSKGYDEAIKVLQRAYSL 107 (284)
T ss_pred HHHHHhhccccHHHHHHHHHHHH
Confidence 99999999999999999999764
No 212
>PLN03098 LPA1 LOW PSII ACCUMULATION1; Provisional
Probab=98.18 E-value=4e-05 Score=78.48 Aligned_cols=69 Identities=16% Similarity=0.033 Sum_probs=62.9
Q ss_pred cCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHHH---HHHHHHHHHHcCCHHHHHHHHHHHHHh
Q 003563 96 LSPKDSALWKQLLTFAVQKGDTAQAMYYIRQAIRAEPKDISL---RIHLASFYVEIGDYEKAAESYEQIQKL 164 (810)
Q Consensus 96 ~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~---~~~la~~~~~~g~~~~A~~~~~~~l~~ 164 (810)
.+|+++.+|+++|.++...|++++|+.+|+++++++|++..+ ++++|.+|..+|++++|+..++++++.
T Consensus 70 ~dP~~a~a~~NLG~AL~~lGryeEAIa~f~rALeL~Pd~aeA~~A~yNLAcaya~LGr~dEAla~LrrALel 141 (453)
T PLN03098 70 ADVKTAEDAVNLGLSLFSKGRVKDALAQFETALELNPNPDEAQAAYYNKACCHAYREEGKKAADCLRTALRD 141 (453)
T ss_pred CCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Confidence 468889999999999999999999999999999999998854 999999999999999999999999987
No 213
>KOG2610 consensus Uncharacterized conserved protein [Function unknown]
Probab=98.18 E-value=0.00038 Score=67.19 Aligned_cols=118 Identities=13% Similarity=-0.074 Sum_probs=54.5
Q ss_pred HHHcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHcCChHHHHHHHHHHHhc-CCCC---HHHHHHHHHHHHHcCCHH
Q 003563 43 QYAYGNFEQAISLLKEVVRLSPNLPETYNTLGLAHSALGNHKSAFDFYVIAAHL-SPKD---SALWKQLLTFAVQKGDTA 118 (810)
Q Consensus 43 ~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~-~p~~---~~~~~~la~~~~~~g~~~ 118 (810)
.+.+|++.+|-...+++++..|.+.-++..--..++..|+...-...+++.+.. +|+. ..+.-.++..+...|-|+
T Consensus 113 ~~~~g~~h~a~~~wdklL~d~PtDlla~kfsh~a~fy~G~~~~~k~ai~kIip~wn~dlp~~sYv~GmyaFgL~E~g~y~ 192 (491)
T KOG2610|consen 113 LWGRGKHHEAAIEWDKLLDDYPTDLLAVKFSHDAHFYNGNQIGKKNAIEKIIPKWNADLPCYSYVHGMYAFGLEECGIYD 192 (491)
T ss_pred hhccccccHHHHHHHHHHHhCchhhhhhhhhhhHHHhccchhhhhhHHHHhccccCCCCcHHHHHHHHHHhhHHHhccch
Confidence 344444444444444555444444444444444444444444444444444433 3322 222233344444445555
Q ss_pred HHHHHHHHHHHcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHH
Q 003563 119 QAMYYIRQAIRAEPKDISLRIHLASFYVEIGDYEKAAESYEQ 160 (810)
Q Consensus 119 ~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~ 160 (810)
+|.+..+++++++|.+..+...++.++...|++.++.+...+
T Consensus 193 dAEk~A~ralqiN~~D~Wa~Ha~aHVlem~~r~Keg~eFM~~ 234 (491)
T KOG2610|consen 193 DAEKQADRALQINRFDCWASHAKAHVLEMNGRHKEGKEFMYK 234 (491)
T ss_pred hHHHHHHhhccCCCcchHHHHHHHHHHHhcchhhhHHHHHHh
Confidence 555555555555554444444444444444554444444433
No 214
>KOG1586 consensus Protein required for fusion of vesicles in vesicular transport, alpha-SNAP [Intracellular trafficking, secretion, and vesicular transport]
Probab=98.09 E-value=0.0023 Score=58.82 Aligned_cols=174 Identities=20% Similarity=0.175 Sum_probs=90.2
Q ss_pred cCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHcCChHHHHHHHHHHHhcC-----CCCH-HHHHHHHHHHHHcCCHHH
Q 003563 46 YGNFEQAISLLKEVVRLSPNLPETYNTLGLAHSALGNHKSAFDFYVIAAHLS-----PKDS-ALWKQLLTFAVQKGDTAQ 119 (810)
Q Consensus 46 ~g~~~~A~~~~~~~l~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~-----p~~~-~~~~~la~~~~~~g~~~~ 119 (810)
.+.+++|.++|.++ |..|....++..|-..|.++.... .++. ..+...+.+ ++.++..+
T Consensus 27 ~~k~eeAadl~~~A--------------an~yklaK~w~~AG~aflkaA~~h~k~~skhDaat~YveA~~c-ykk~~~~e 91 (288)
T KOG1586|consen 27 SNKYEEAAELYERA--------------ANMYKLAKNWSAAGDAFLKAADLHLKAGSKHDAATTYVEAANC-YKKVDPEE 91 (288)
T ss_pred CcchHHHHHHHHHH--------------HHHHHHHHhHHHHHHHHHHHHHHHHhcCCchhHHHHHHHHHHH-hhccChHH
Confidence 45778888877776 344444455555555555554332 1122 223333333 44558888
Q ss_pred HHHHHHHHHHcCCCCHH------HHHHHHHHHHHc-CCHHHHHHHHHHHHHhCCCC------HHHHHHHHHHHHHcCChH
Q 003563 120 AMYYIRQAIRAEPKDIS------LRIHLASFYVEI-GDYEKAAESYEQIQKLFPDN------VDATKTGAQLFLKCGQTA 186 (810)
Q Consensus 120 A~~~~~~al~~~p~~~~------~~~~la~~~~~~-g~~~~A~~~~~~~l~~~p~~------~~~~~~la~~~~~~g~~~ 186 (810)
|+.++++++++..+-.. .+..+|.+|..- .++++|+.+|+++-+..... ...+...|..-...++|.
T Consensus 92 Av~cL~~aieIyt~~Grf~~aAk~~~~iaEiyEsdl~d~ekaI~~YE~Aae~yk~ees~ssANKC~lKvA~yaa~leqY~ 171 (288)
T KOG1586|consen 92 AVNCLEKAIEIYTDMGRFTMAAKHHIEIAEIYESDLQDFEKAIAHYEQAAEYYKGEESVSSANKCLLKVAQYAAQLEQYS 171 (288)
T ss_pred HHHHHHHHHHHHHhhhHHHHHHhhhhhHHHHHhhhHHHHHHHHHHHHHHHHHHcchhhhhhHHHHHHHHHHHHHHHHHHH
Confidence 88888888776543322 234566666443 66666666666665544332 123444555555666666
Q ss_pred HHHHHHHHHHhhCCCCCCh-----HHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Q 003563 187 RSIGILEEYLKVHPSDADL-----SVIDLLVAILMENNAYEKTLQHIEHAQIV 234 (810)
Q Consensus 187 ~A~~~~~~~l~~~p~~~~~-----~~~~~la~~~~~~g~~~~A~~~~~~~~~~ 234 (810)
+|+..|++.....-++.-. .-++.-|.+++...+.-.+...+++..+.
T Consensus 172 ~Ai~iyeqva~~s~~n~LLKys~KdyflkAgLChl~~~D~v~a~~ALeky~~~ 224 (288)
T KOG1586|consen 172 KAIDIYEQVARSSLDNNLLKYSAKDYFLKAGLCHLCKADEVNAQRALEKYQEL 224 (288)
T ss_pred HHHHHHHHHHHHhccchHHHhHHHHHHHHHHHHhHhcccHHHHHHHHHHHHhc
Confidence 6666666655543333210 01222333444444544444444444444
No 215
>COG3118 Thioredoxin domain-containing protein [Posttranslational modification, protein turnover, chaperones]
Probab=98.09 E-value=0.00032 Score=67.31 Aligned_cols=161 Identities=20% Similarity=0.191 Sum_probs=106.1
Q ss_pred CHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCCCHHHHH--HH
Q 003563 30 SPGVTKMLGEASLQYAYGNFEQAISLLKEVVRLSPNLPETYNTLGLAHSALGNHKSAFDFYVIAAHLSPKDSALWK--QL 107 (810)
Q Consensus 30 ~~~~~~~l~~a~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~p~~~~~~~--~l 107 (810)
++.....+.++......|++.+|...|..++...|++.++...++.||...|+.+.|...+...-...... .... ..
T Consensus 131 ~~~~e~~~~~~~~~~~~e~~~~a~~~~~~al~~~~~~~~~~~~la~~~l~~g~~e~A~~iL~~lP~~~~~~-~~~~l~a~ 209 (304)
T COG3118 131 PAEEEEALAEAKELIEAEDFGEAAPLLKQALQAAPENSEAKLLLAECLLAAGDVEAAQAILAALPLQAQDK-AAHGLQAQ 209 (304)
T ss_pred ChHHHHHHHHhhhhhhccchhhHHHHHHHHHHhCcccchHHHHHHHHHHHcCChHHHHHHHHhCcccchhh-HHHHHHHH
Confidence 34455567788888999999999999999999999999999999999999999999888876532222111 1111 11
Q ss_pred HHHHHHcCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC--CHHHHHHHHHHHHHcCCh
Q 003563 108 LTFAVQKGDTAQAMYYIRQAIRAEPKDISLRIHLASFYVEIGDYEKAAESYEQIQKLFPD--NVDATKTGAQLFLKCGQT 185 (810)
Q Consensus 108 a~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~--~~~~~~~la~~~~~~g~~ 185 (810)
...+.+.....+. ..+++.+..+|++.++.+.+|..+...|+.+.|++.+-..++.+-. +..+...+-.++...|.-
T Consensus 210 i~ll~qaa~~~~~-~~l~~~~aadPdd~~aa~~lA~~~~~~g~~e~Ale~Ll~~l~~d~~~~d~~~Rk~lle~f~~~g~~ 288 (304)
T COG3118 210 IELLEQAAATPEI-QDLQRRLAADPDDVEAALALADQLHLVGRNEAALEHLLALLRRDRGFEDGEARKTLLELFEAFGPA 288 (304)
T ss_pred HHHHHHHhcCCCH-HHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcccccCcHHHHHHHHHHHhcCCC
Confidence 1222232222222 2344555667888888888888888888888888888777776443 345555555555555544
Q ss_pred HHHHHHH
Q 003563 186 ARSIGIL 192 (810)
Q Consensus 186 ~~A~~~~ 192 (810)
+.+...+
T Consensus 289 Dp~~~~~ 295 (304)
T COG3118 289 DPLVLAY 295 (304)
T ss_pred CHHHHHH
Confidence 4333333
No 216
>KOG2796 consensus Uncharacterized conserved protein [Function unknown]
Probab=98.08 E-value=0.00052 Score=64.01 Aligned_cols=163 Identities=17% Similarity=0.226 Sum_probs=79.4
Q ss_pred HHHHHHHcCCHHHHHHHHHHHHHh------------CCCC---------hHHHHHHHHHHHHcCChHHHHHHHHHHHhcC
Q 003563 39 EASLQYAYGNFEQAISLLKEVVRL------------SPNL---------PETYNTLGLAHSALGNHKSAFDFYVIAAHLS 97 (810)
Q Consensus 39 ~a~~~~~~g~~~~A~~~~~~~l~~------------~p~~---------~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~ 97 (810)
.|.+....|+..+.+.-+...... .|+. ..+.+.+..++.-.|.|.-....+.+.++.+
T Consensus 128 hAe~~~~lgnpqesLdRl~~L~~~V~~ii~~~e~~~~~ESsv~lW~KRl~~Vmy~~~~~llG~kEy~iS~d~~~~vi~~~ 207 (366)
T KOG2796|consen 128 HAELQQYLGNPQESLDRLHKLKTVVSKILANLEQGLAEESSIRLWRKRLGRVMYSMANCLLGMKEYVLSVDAYHSVIKYY 207 (366)
T ss_pred HHHHHHhcCCcHHHHHHHHHHHHHHHHHHHHHHhccchhhHHHHHHHHHHHHHHHHHHHHhcchhhhhhHHHHHHHHHhC
Confidence 355566778887776655544321 1110 1122334444444555555555555555544
Q ss_pred -CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC------CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHH
Q 003563 98 -PKDSALWKQLLTFAVQKGDTAQAMYYIRQAIRAE------PKDISLRIHLASFYVEIGDYEKAAESYEQIQKLFPDNVD 170 (810)
Q Consensus 98 -p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~------p~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~ 170 (810)
|.++.....+|.+.++.|+.+.|..+|+++-+.. ..+.-+..+.+.++.-.+++..|...+.+++..+|.++.
T Consensus 208 ~e~~p~L~s~Lgr~~MQ~GD~k~a~~yf~~vek~~~kL~~~q~~~~V~~n~a~i~lg~nn~a~a~r~~~~i~~~D~~~~~ 287 (366)
T KOG2796|consen 208 PEQEPQLLSGLGRISMQIGDIKTAEKYFQDVEKVTQKLDGLQGKIMVLMNSAFLHLGQNNFAEAHRFFTEILRMDPRNAV 287 (366)
T ss_pred CcccHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHhhhhccchhHHHHhhhhhheecccchHHHHHHHhhccccCCCchh
Confidence 3344444455555555555555555555333211 112223444444455555555555555555555555555
Q ss_pred HHHHHHHHHHHcCChHHHHHHHHHHHhhCCC
Q 003563 171 ATKTGAQLFLKCGQTARSIGILEEYLKVHPS 201 (810)
Q Consensus 171 ~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~ 201 (810)
+..+.|.++...|+..+|++.++.++...|.
T Consensus 288 a~NnKALcllYlg~l~DAiK~~e~~~~~~P~ 318 (366)
T KOG2796|consen 288 ANNNKALCLLYLGKLKDALKQLEAMVQQDPR 318 (366)
T ss_pred hhchHHHHHHHHHHHHHHHHHHHHHhccCCc
Confidence 5555555555555555555555555555444
No 217
>KOG1258 consensus mRNA processing protein [RNA processing and modification]
Probab=98.07 E-value=0.025 Score=60.07 Aligned_cols=363 Identities=14% Similarity=0.052 Sum_probs=236.3
Q ss_pred HHHHHHHHHHHHhCCCChHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCCCHHHHHHHHH-HHHHcCCHHHHHHHHHHHH
Q 003563 50 EQAISLLKEVVRLSPNLPETYNTLGLAHSALGNHKSAFDFYVIAAHLSPKDSALWKQLLT-FAVQKGDTAQAMYYIRQAI 128 (810)
Q Consensus 50 ~~A~~~~~~~l~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~p~~~~~~~~la~-~~~~~g~~~~A~~~~~~al 128 (810)
+.+...|...+...|.....|...|..-.+.|..+.+.+.|++++.--|...+.|..+-. +--..|+.+.-...|++|.
T Consensus 62 ~~~r~~y~~fL~kyPl~~gyW~kfA~~E~klg~~~~s~~Vfergv~aip~SvdlW~~Y~~f~~n~~~d~~~lr~~fe~A~ 141 (577)
T KOG1258|consen 62 DALREVYDIFLSKYPLCYGYWKKFADYEYKLGNAENSVKVFERGVQAIPLSVDLWLSYLAFLKNNNGDPETLRDLFERAK 141 (577)
T ss_pred HHHHHHHHHHHhhCccHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHhhhhHHHHHHHHHHHHhccCCCHHHHHHHHHHHH
Confidence 556666777788899999999999999999999999999999999999988888886544 4445688888888899998
Q ss_pred HcCCCC---HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHH------cCChHHHHHHHHHHH---
Q 003563 129 RAEPKD---ISLRIHLASFYVEIGDYEKAAESYEQIQKLFPDNVDATKTGAQLFLK------CGQTARSIGILEEYL--- 196 (810)
Q Consensus 129 ~~~p~~---~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~------~g~~~~A~~~~~~~l--- 196 (810)
.....+ ...|-.....-..++++..-...|++.++.--.....++..=.-+.. .-..+++.+.-....
T Consensus 142 ~~vG~dF~S~~lWdkyie~en~qks~k~v~~iyeRileiP~~~~~~~f~~f~~~l~~~~~~~l~~~d~~~~l~~~~~~~~ 221 (577)
T KOG1258|consen 142 SYVGLDFLSDPLWDKYIEFENGQKSWKRVANIYERILEIPLHQLNRHFDRFKQLLNQNEEKILLSIDELIQLRSDVAERS 221 (577)
T ss_pred HhcccchhccHHHHHHHHHHhccccHHHHHHHHHHHHhhhhhHhHHHHHHHHHHHhcCChhhhcCHHHHHHHhhhHHhhh
Confidence 865443 23454555555778888888888888887632221111111000111 111222222211111
Q ss_pred ----------------hh--CCCCCChHHHHHHHH-------HHHHcCCHHHHHHHHHHHHHHh----cCCCCCcHHHHH
Q 003563 197 ----------------KV--HPSDADLSVIDLLVA-------ILMENNAYEKTLQHIEHAQIVR----FSGKELPLKLKV 247 (810)
Q Consensus 197 ----------------~~--~p~~~~~~~~~~la~-------~~~~~g~~~~A~~~~~~~~~~~----~~~~~~~~~~~~ 247 (810)
+. .|.......-..+.. ++.......+.+..++..+... .+..+.....+.
T Consensus 222 ~~~~~~~~~e~~~~~v~~~~~~s~~l~~~~~~l~~~~~~~~~~~~~s~~~~~kr~~fE~~IkrpYfhvkpl~~aql~nw~ 301 (577)
T KOG1258|consen 222 KITHSQEPLEELEIGVKDSTDPSKSLTEEKTILKRIVSIHEKVYQKSEEEEEKRWGFEEGIKRPYFHVKPLDQAQLKNWR 301 (577)
T ss_pred hcccccChhHHHHHHHhhccCccchhhHHHHHHHHHHHHHHHHHHhhHhHHHHHHhhhhhccccccccCcccHHHHHHHH
Confidence 00 011100001111111 1122222223333333333210 011122234456
Q ss_pred HHHHHHHhcCCHHHHHHHHHHhhccCCchhHhHHHHHHHHHHHcCCcHHHHHHHHHHHhccCCCCHHHHHHHHHHHHHcc
Q 003563 248 KAGICYLRLGNMEKAEILFADLQWKNAIDHADLITEVADTLMSLGHSNSALKYYHFLETNAGTDNGYLYLKLAECYLSLK 327 (810)
Q Consensus 248 ~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~la~~~~~~g 327 (810)
.........|+++...-.|++++.... ...+.|...+......|+.+-|-..+.++.+...+..+.+...-+..-...|
T Consensus 302 ~yLdf~i~~g~~~~~~~l~ercli~cA-~Y~efWiky~~~m~~~~~~~~~~~~~~~~~~i~~k~~~~i~L~~a~f~e~~~ 380 (577)
T KOG1258|consen 302 YYLDFEITLGDFSRVFILFERCLIPCA-LYDEFWIKYARWMESSGDVSLANNVLARACKIHVKKTPIIHLLEARFEESNG 380 (577)
T ss_pred HHhhhhhhcccHHHHHHHHHHHHhHHh-hhHHHHHHHHHHHHHcCchhHHHHHHHhhhhhcCCCCcHHHHHHHHHHHhhc
Confidence 666677789999999999999876654 4888999999999999999999999998888878899999999999999999
Q ss_pred CHHHHHHHHHHHHhhcCCCHHHHHHHHHHHHHcCCHHHHH---HhcCCCCCCCcccCCCCCCChhhhHHHHHHHHHHHH-
Q 003563 328 ERAHAIMFFYKALDRFEDNIDARLTLASLLLEEAKEEEAI---TLLSPPKDLDSLDMNSDKSNPWWLNEKIIMKLCHIY- 403 (810)
Q Consensus 328 ~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~---~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~la~~~- 403 (810)
++..|...++++.+..|+..++-..-+....+.|+.+.+. +++.....-..... .-+..+...++..
T Consensus 381 n~~~A~~~lq~i~~e~pg~v~~~l~~~~~e~r~~~~~~~~~~~~l~s~~~~~~~~~~---------i~~~l~~~~~r~~~ 451 (577)
T KOG1258|consen 381 NFDDAKVILQRIESEYPGLVEVVLRKINWERRKGNLEDANYKNELYSSIYEGKENNG---------ILEKLYVKFARLRY 451 (577)
T ss_pred cHHHHHHHHHHHHhhCCchhhhHHHHHhHHHHhcchhhhhHHHHHHHHhcccccCcc---------hhHHHHHHHHHHHH
Confidence 9999999999999988999999888888899999999888 44433322221111 1223444444433
Q ss_pred HhcCCchhHHhhhhhhhhh
Q 003563 404 RAKGMPEDFVDAIFPLVCE 422 (810)
Q Consensus 404 ~~~g~~~~A~~~~~~~l~~ 422 (810)
.-.++.+.|...+..+++.
T Consensus 452 ~i~~d~~~a~~~l~~~~~~ 470 (577)
T KOG1258|consen 452 KIREDADLARIILLEANDI 470 (577)
T ss_pred HHhcCHHHHHHHHHHhhhc
Confidence 3346667777777666655
No 218
>KOG4555 consensus TPR repeat-containing protein [Function unknown]
Probab=98.07 E-value=0.00012 Score=60.24 Aligned_cols=95 Identities=18% Similarity=0.121 Sum_probs=60.4
Q ss_pred HHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHhhCCCCCCh--HHHHHHHHHHHH
Q 003563 140 HLASFYVEIGDYEKAAESYEQIQKLFPDNVDATKTGAQLFLKCGQTARSIGILEEYLKVHPSDADL--SVIDLLVAILME 217 (810)
Q Consensus 140 ~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~--~~~~~la~~~~~ 217 (810)
..|..+...|+.+.|++.|.+++.+.|..+.++.+.+..+.-+|+.++|+..+++++++..+.... .++...|.+|..
T Consensus 48 l~~valaE~g~Ld~AlE~F~qal~l~P~raSayNNRAQa~RLq~~~e~ALdDLn~AleLag~~trtacqa~vQRg~lyRl 127 (175)
T KOG4555|consen 48 LKAIALAEAGDLDGALELFGQALCLAPERASAYNNRAQALRLQGDDEEALDDLNKALELAGDQTRTACQAFVQRGLLYRL 127 (175)
T ss_pred HHHHHHHhccchHHHHHHHHHHHHhcccchHhhccHHHHHHHcCChHHHHHHHHHHHHhcCccchHHHHHHHHHHHHHHH
Confidence 345555666666666666666666666666666666666666666666666666666664433321 345566666666
Q ss_pred cCCHHHHHHHHHHHHHH
Q 003563 218 NNAYEKTLQHIEHAQIV 234 (810)
Q Consensus 218 ~g~~~~A~~~~~~~~~~ 234 (810)
.|+.+.|..-|+.+.++
T Consensus 128 ~g~dd~AR~DFe~AA~L 144 (175)
T KOG4555|consen 128 LGNDDAARADFEAAAQL 144 (175)
T ss_pred hCchHHHHHhHHHHHHh
Confidence 67777776666666655
No 219
>PF06552 TOM20_plant: Plant specific mitochondrial import receptor subunit TOM20; InterPro: IPR010547 This family consists of several plant specific mitochondrial import receptor subunit TOM20 (translocase of outer membrane 20 kDa subunit) proteins. Most mitochondrial proteins are encoded by the nuclear genome, and are synthesised in the cytosol. TOM20 is a general import receptor that binds to mitochondrial pre-sequences in the early step of protein import into the mitochondria [].; GO: 0045040 protein import into mitochondrial outer membrane, 0005742 mitochondrial outer membrane translocase complex; PDB: 1ZU2_A.
Probab=98.07 E-value=4e-05 Score=67.70 Aligned_cols=98 Identities=20% Similarity=0.216 Sum_probs=48.9
Q ss_pred HHHHHHHHHHHHHhCCCChHHHHHHHHHHHHcCChHH---HHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCHHHHHHHHH
Q 003563 49 FEQAISLLKEVVRLSPNLPETYNTLGLAHSALGNHKS---AFDFYVIAAHLSPKDSALWKQLLTFAVQKGDTAQAMYYIR 125 (810)
Q Consensus 49 ~~~A~~~~~~~l~~~p~~~~~~~~l~~~~~~~g~~~~---A~~~~~~a~~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~ 125 (810)
|+.|.+.++.....+|.++++++.-|.++..+.++.. +.. -+++|+.-|+
T Consensus 7 FE~ark~aea~y~~nP~DadnL~~WG~ALLELAqfk~g~es~~---------------------------miedAisK~e 59 (186)
T PF06552_consen 7 FEHARKKAEAAYAKNPLDADNLTNWGGALLELAQFKQGPESKK---------------------------MIEDAISKFE 59 (186)
T ss_dssp HHHHHHHHHHHHHH-TT-HHHHHHHHHHHHHHHHHS-HHHHHH---------------------------HHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhCcHhHHHHHHHHHHHHHHHhccCcchHHH---------------------------HHHHHHHHHH
Confidence 4455555555555566666666555555554432211 111 1344555566
Q ss_pred HHHHcCCCCHHHHHHHHHHHHHcCC-----------HHHHHHHHHHHHHhCCCCHHHHH
Q 003563 126 QAIRAEPKDISLRIHLASFYVEIGD-----------YEKAAESYEQIQKLFPDNVDATK 173 (810)
Q Consensus 126 ~al~~~p~~~~~~~~la~~~~~~g~-----------~~~A~~~~~~~l~~~p~~~~~~~ 173 (810)
.++.++|+..++++.+|.+|..++. |++|.++|+++...+|++.....
T Consensus 60 eAL~I~P~~hdAlw~lGnA~ts~A~l~~d~~~A~~~F~kA~~~FqkAv~~~P~ne~Y~k 118 (186)
T PF06552_consen 60 EALKINPNKHDALWCLGNAYTSLAFLTPDTAEAEEYFEKATEYFQKAVDEDPNNELYRK 118 (186)
T ss_dssp HHHHH-TT-HHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHH-TT-HHHHH
T ss_pred HHHhcCCchHHHHHHHHHHHHHHHhhcCChHHHHHHHHHHHHHHHHHHhcCCCcHHHHH
Confidence 6666666666666666666655442 55566666666666666554433
No 220
>PF13424 TPR_12: Tetratricopeptide repeat; PDB: 3RO2_A 3Q15_A 3ASG_A 3ASD_A 3AS5_A 3AS4_A 3ASH_B 4A1S_B 3CEQ_B 3EDT_H ....
Probab=98.07 E-value=2.4e-06 Score=67.17 Aligned_cols=71 Identities=25% Similarity=0.263 Sum_probs=57.6
Q ss_pred chhhhhHHHHHHHhChhhHHHHHHHHHhccccccCCCCCCCCCCCcccccCCCCcccccHHHHHHHHHHHHhcCCHHHHH
Q 003563 722 QEALYNIARACHHVGLVSLAASYYEKVLAIKEKDYPIPKHNDKRPDLMESGESGYCDLQREAAYNLHLIYKNSGAVDLAR 801 (810)
Q Consensus 722 ~e~~ynlgr~~~~lg~~~~Ai~~Y~~vL~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~eaa~nl~~iy~~~g~~~~A~ 801 (810)
..++.|+|.+|..+|.++.|+++|++++++.... | +.......+.+|++.+|...|+++.|.
T Consensus 5 a~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~------~------------~~~~~~a~~~~~lg~~~~~~g~~~~A~ 66 (78)
T PF13424_consen 5 ANAYNNLARVYRELGRYDEALDYYEKALDIEEQL------G------------DDHPDTANTLNNLGECYYRLGDYEEAL 66 (78)
T ss_dssp HHHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHHT------T------------THHHHHHHHHHHHHHHHHHTTHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHH------C------------CCCHHHHHHHHHHHHHHHHcCCHHHHH
Confidence 4678999999999999999999999999883221 1 111234788999999999999999999
Q ss_pred HHHHhhccC
Q 003563 802 QLLKDYCTF 810 (810)
Q Consensus 802 ~~~~~~~~~ 810 (810)
.++++-+.|
T Consensus 67 ~~~~~al~i 75 (78)
T PF13424_consen 67 EYYQKALDI 75 (78)
T ss_dssp HHHHHHHHH
T ss_pred HHHHHHHhh
Confidence 999987653
No 221
>KOG1914 consensus mRNA cleavage and polyadenylation factor I complex, subunit RNA14 [RNA processing and modification]
Probab=97.99 E-value=0.031 Score=58.18 Aligned_cols=342 Identities=11% Similarity=0.043 Sum_probs=209.2
Q ss_pred CHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHH-HHHHHHHHcCChHHHHHHHHHHHh-------cCCCCH
Q 003563 30 SPGVTKMLGEASLQYAYGNFEQAISLLKEVVRLSPNLPETYN-TLGLAHSALGNHKSAFDFYVIAAH-------LSPKDS 101 (810)
Q Consensus 30 ~~~~~~~l~~a~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~-~l~~~~~~~g~~~~A~~~~~~a~~-------~~p~~~ 101 (810)
|.....+.......+...+|+.-..+|.+++..--+ .+.|. .+..+-...|+...+.....+|.+ .++...
T Consensus 50 P~s~r~W~~yi~~El~skdfe~VEkLF~RCLvkvLn-lDLW~lYl~YVR~~~~~~~~~r~~m~qAy~f~l~kig~di~s~ 128 (656)
T KOG1914|consen 50 PSSPRAWKLYIERELASKDFESVEKLFSRCLVKVLN-LDLWKLYLSYVRETKGKLFGYREKMVQAYDFALEKIGMDIKSY 128 (656)
T ss_pred CCCcHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHhh-HhHHHHHHHHHHHHccCcchHHHHHHHHHHHHHHHhccCcccc
Confidence 333444555566678899999999999999875433 44443 344455556666665555444433 356667
Q ss_pred HHHHHHHHHHHH---cCC------HHHHHHHHHHHHHcCCCCHHHHHH------------HH--HHHHHcCCHHHHHH--
Q 003563 102 ALWKQLLTFAVQ---KGD------TAQAMYYIRQAIRAEPKDISLRIH------------LA--SFYVEIGDYEKAAE-- 156 (810)
Q Consensus 102 ~~~~~la~~~~~---~g~------~~~A~~~~~~al~~~p~~~~~~~~------------la--~~~~~~g~~~~A~~-- 156 (810)
..|...+..+.. .|. .+.-...|++++..--.+.+-++. .| .+-.....|..|..
T Consensus 129 siW~eYi~FL~~vea~gk~ee~QRI~~vRriYqral~tPm~nlEkLW~DY~~fE~~IN~~tarK~i~e~s~~Ym~AR~~~ 208 (656)
T KOG1914|consen 129 SIWDEYINFLEGVEAVGKYEENQRITAVRRIYQRALVTPMHNLEKLWKDYEAFEQEINIITARKFIGERSPEYMNARRVY 208 (656)
T ss_pred hhHHHHHHHHHcccccccHHHHHHHHHHHHHHHHHhcCccccHHHHHHHHHHHHHHHHHHHHHHHHHhhCHHHHHHHHHH
Confidence 778877776542 244 444556677776532222211100 00 00011111222222
Q ss_pred ----------------------------------------------------------HHHHHHHhCCCCHHHHHHHHHH
Q 003563 157 ----------------------------------------------------------SYEQIQKLFPDNVDATKTGAQL 178 (810)
Q Consensus 157 ----------------------------------------------------------~~~~~l~~~p~~~~~~~~la~~ 178 (810)
.|++++...+-.+++|+..+..
T Consensus 209 qel~~lt~GL~r~~~~vp~~~T~~e~~qv~~W~n~I~wEksNpL~t~~~~~~~~Rv~yayeQ~ll~l~~~peiWy~~s~y 288 (656)
T KOG1914|consen 209 QELQNLTRGLNRNAPAVPPKGTKDEIQQVELWKNWIKWEKSNPLRTLDGTMLTRRVMYAYEQCLLYLGYHPEIWYDYSMY 288 (656)
T ss_pred HHHHHHHhhhcccCCCCCCCCChHHHHHHHHHHHHHHHHhcCCcccccccHHHHHHHHHHHHHHHHHhcCHHHHHHHHHH
Confidence 2333333334445566655555
Q ss_pred HHHcCC--------------hHHHHHHHHHHHhhCCCCCChHHHHHHHHHHHHcC---CHHHHHHHHHHHHHHhcCCCCC
Q 003563 179 FLKCGQ--------------TARSIGILEEYLKVHPSDADLSVIDLLVAILMENN---AYEKTLQHIEHAQIVRFSGKEL 241 (810)
Q Consensus 179 ~~~~g~--------------~~~A~~~~~~~l~~~p~~~~~~~~~~la~~~~~~g---~~~~A~~~~~~~~~~~~~~~~~ 241 (810)
+...++ .+++..+|++++..-.... ...++.++..-...- .++.....+++++.... ..
T Consensus 289 l~~~s~l~~~~~d~~~a~~~t~e~~~~yEr~I~~l~~~~-~~Ly~~~a~~eE~~~~~n~~~~~~~~~~~ll~~~~---~~ 364 (656)
T KOG1914|consen 289 LIEISDLLTEKGDVPDAKSLTDEAASIYERAIEGLLKEN-KLLYFALADYEESRYDDNKEKKVHEIYNKLLKIED---ID 364 (656)
T ss_pred HHHhhHHHHHhcccccchhhHHHHHHHHHHHHHHHHHHH-HHHHHHHHhhHHHhcccchhhhhHHHHHHHHhhhc---cC
Confidence 555555 5677788888776432221 113333443332222 36666777777776632 33
Q ss_pred cHHHHHHHHHHHHhcCCHHHHHHHHHHhhccCCchhHhHHHHHHHH-HHHcCCcHHHHHHHHHHHhccCCCCHHHHHHHH
Q 003563 242 PLKLKVKAGICYLRLGNMEKAEILFADLQWKNAIDHADLITEVADT-LMSLGHSNSALKYYHFLETNAGTDNGYLYLKLA 320 (810)
Q Consensus 242 ~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~la~~-~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~la 320 (810)
..-++..+-..-.+..-.+.|..+|.++-+.... ...++..-|.+ |...++..-|..+|+--+.. .++.+..-....
T Consensus 365 ~tLv~~~~mn~irR~eGlkaaR~iF~kaR~~~r~-~hhVfVa~A~mEy~cskD~~~AfrIFeLGLkk-f~d~p~yv~~Yl 442 (656)
T KOG1914|consen 365 LTLVYCQYMNFIRRAEGLKAARKIFKKAREDKRT-RHHVFVAAALMEYYCSKDKETAFRIFELGLKK-FGDSPEYVLKYL 442 (656)
T ss_pred CceehhHHHHHHHHhhhHHHHHHHHHHHhhccCC-cchhhHHHHHHHHHhcCChhHHHHHHHHHHHh-cCCChHHHHHHH
Confidence 3344555556666777788999999998654332 23444443333 45678999999999988866 788998888899
Q ss_pred HHHHHccCHHHHHHHHHHHHhh--cCC-CHHHHHHHHHHHHHcCCHHHHHHhcCCCCCCCc
Q 003563 321 ECYLSLKERAHAIMFFYKALDR--FED-NIDARLTLASLLLEEAKEEEAITLLSPPKDLDS 378 (810)
Q Consensus 321 ~~~~~~g~~~~A~~~~~~al~~--~p~-~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~ 378 (810)
..+...++-..|...|++++.. .|+ ..++|-.+-..-..-|+...++++-++-....|
T Consensus 443 dfL~~lNdd~N~R~LFEr~l~s~l~~~ks~~Iw~r~l~yES~vGdL~si~~lekR~~~af~ 503 (656)
T KOG1914|consen 443 DFLSHLNDDNNARALFERVLTSVLSADKSKEIWDRMLEYESNVGDLNSILKLEKRRFTAFP 503 (656)
T ss_pred HHHHHhCcchhHHHHHHHHHhccCChhhhHHHHHHHHHHHHhcccHHHHHHHHHHHHHhcc
Confidence 9999999999999999999987 433 357888888888888998888887766555555
No 222
>PF13424 TPR_12: Tetratricopeptide repeat; PDB: 3RO2_A 3Q15_A 3ASG_A 3ASD_A 3AS5_A 3AS4_A 3ASH_B 4A1S_B 3CEQ_B 3EDT_H ....
Probab=97.98 E-value=7.5e-06 Score=64.36 Aligned_cols=27 Identities=33% Similarity=0.522 Sum_probs=12.7
Q ss_pred HHHHHHHHHHHHcCChHHHHHHHHHHH
Q 003563 68 ETYNTLGLAHSALGNHKSAFDFYVIAA 94 (810)
Q Consensus 68 ~~~~~l~~~~~~~g~~~~A~~~~~~a~ 94 (810)
.++..+|.+|..+|++++|+.+|++++
T Consensus 6 ~~~~~la~~~~~~~~~~~A~~~~~~al 32 (78)
T PF13424_consen 6 NAYNNLARVYRELGRYDEALDYYEKAL 32 (78)
T ss_dssp HHHHHHHHHHHHTT-HHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 344444555555555555555554444
No 223
>PF10345 Cohesin_load: Cohesin loading factor; InterPro: IPR019440 Cohesin loading factor is a conserved protein that has been characterised in fungi. It is associated with the cohesin complex and is required in G1 for cohesin binding to chromosomes, but is dispensable in G2 when cohesion has been established. It is often referred to as Ssl3 in Schizosaccharomyces pombe (Fission yeast), and Scc4 in Saccharomyces cerevisiae (Baker's yeast). It complexes with Mis4 [].
Probab=97.97 E-value=0.0073 Score=68.32 Aligned_cols=138 Identities=17% Similarity=0.133 Sum_probs=90.9
Q ss_pred hhhcchhhhccchHHHHHHHHHHHhhC-------CCCh---H---------HHHHHHHHHHHHHhCccccchhHHHHHHH
Q 003563 648 IISGHQFTMASHHQDAARCYLEAYKLL-------PENP---L---------INLCVGSALINLALGFRLQNKHQCLAQGF 708 (810)
Q Consensus 648 ~~~g~~~~~~~~~~~Ai~~y~~a~~~~-------p~~p---~---------~~l~l~~~~~~~~~~r~~~~r~~~~~q~~ 708 (810)
++.|-.....++.+.|..++.++++.- |..| + .....-.+.+..++...+......+.+.+
T Consensus 305 ~lS~l~~~~~~~~~ks~k~~~k~l~~i~~~~~~~~~~~~~sl~~~~~~~~~~~~l~~~~~~y~~~~~~~~~~~~~a~~~l 384 (608)
T PF10345_consen 305 FLSGLHNLYKGSMDKSEKFLEKALKQIEKLKIKSPSAPSESLSEASERIQWLRYLQCYLLFYQIWCNFIRGDWSKATQEL 384 (608)
T ss_pred HHHHHHHhhccCchHHHHHHHHHHHHHHHhhccCCCCCCcCHHHHHHhHHHHHHHHHHHHHHHHHHHHHCcCHHHHHHHH
Confidence 455666666677778888887776431 2121 1 11112223344444455666677788888
Q ss_pred HHHHHhHhhcC------CCchhhhhHHHHHHHhChhhHHHHHHHHHhccccccCCCCCCCCCCCcccccCCCCcccccHH
Q 003563 709 AFLYNNLRLCE------HSQEALYNIARACHHVGLVSLAASYYEKVLAIKEKDYPIPKHNDKRPDLMESGESGYCDLQRE 782 (810)
Q Consensus 709 ~~l~~y~~~~~------~~~e~~ynlgr~~~~lg~~~~Ai~~Y~~vL~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~e 782 (810)
.++.+...-.| ...-++|-.|-.+|..|..+.|..+|.++.-.-++- ....+...++..-
T Consensus 385 ~~~~~~~~~~~~~~~~~~~~~~~yL~gl~~q~~g~l~~A~~~y~~~~~~~~~~--------------~~~~~~~~El~il 450 (608)
T PF10345_consen 385 EFMRQLCQRSPSKLYESLYPLLHYLLGLYYQSTGDLEAALYQYQKPRFLLCEA--------------ANRKSKFRELYIL 450 (608)
T ss_pred HHHHHHHhcCccchhhhhhHHHHHHHHHHHHHcCCHHHHHHHHhhhHHhhhhh--------------hccCCcchHHHHH
Confidence 88887754232 247889999999999999999999999777442110 0111245679999
Q ss_pred HHHHHHHHHHhcCCHHH
Q 003563 783 AAYNLHLIYKNSGAVDL 799 (810)
Q Consensus 783 aa~nl~~iy~~~g~~~~ 799 (810)
|+.|+..|+...+....
T Consensus 451 a~LNl~~I~~~~~~~~~ 467 (608)
T PF10345_consen 451 AALNLAIILQYESSRDD 467 (608)
T ss_pred HHHHHHHHhHhhcccch
Confidence 99999999998776444
No 224
>PF00515 TPR_1: Tetratricopeptide repeat; InterPro: IPR001440 The tetratrico peptide repeat (TPR) is a structural motif present in a wide range of proteins [, , ]. It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. The X-ray structure of a domain containing three TPRs from protein phosphatase 5 revealed that TPR adopts a helix-turn-helix arrangement, with adjacent TPR motifs packing in a parallel fashion, resulting in a spiral of repeating anti-parallel alpha-helices []. The two helices are denoted helix A and helix B. The packing angle between helix A and helix B is ~24 degrees; within a single TPR and generates a right-handed superhelical shape. Helix A interacts with helix B and with helix A' of the next TPR. Two protein surfaces are generated: the inner concave surface is contributed to mainly by residue on helices A, and the other surface presents residues from both helices A and B. ; GO: 0005515 protein binding; PDB: 3SF4_C 2LNI_A 1ELW_A 2C0M_A 1FCH_B 3R9A_B 2J9Q_A 2C0L_A 1KT1_A 3FWV_A ....
Probab=97.97 E-value=6.6e-06 Score=52.32 Aligned_cols=32 Identities=31% Similarity=0.560 Sum_probs=29.5
Q ss_pred hhhhhHHHHHHHhChhhHHHHHHHHHhccccc
Q 003563 723 EALYNIARACHHVGLVSLAASYYEKVLAIKEK 754 (810)
Q Consensus 723 e~~ynlgr~~~~lg~~~~Ai~~Y~~vL~~~~~ 754 (810)
+++|++|.+|..+|.+.+|+.+|+++|++.|+
T Consensus 2 ~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~ 33 (34)
T PF00515_consen 2 EAYYNLGNAYFQLGDYEEALEYYQRALELDPD 33 (34)
T ss_dssp HHHHHHHHHHHHTT-HHHHHHHHHHHHHHSTT
T ss_pred HHHHHHHHHHHHhCCchHHHHHHHHHHHHCcC
Confidence 68999999999999999999999999999875
No 225
>KOG1258 consensus mRNA processing protein [RNA processing and modification]
Probab=97.96 E-value=0.04 Score=58.55 Aligned_cols=316 Identities=10% Similarity=0.044 Sum_probs=194.6
Q ss_pred hHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHHHHHHHH-HHHHHcCCHHHHHHHHHHH
Q 003563 83 HKSAFDFYVIAAHLSPKDSALWKQLLTFAVQKGDTAQAMYYIRQAIRAEPKDISLRIHLA-SFYVEIGDYEKAAESYEQI 161 (810)
Q Consensus 83 ~~~A~~~~~~a~~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la-~~~~~~g~~~~A~~~~~~~ 161 (810)
.+.+...|...+...|.....|...|..-.+.|..+.+.+.|++++..-|.....|.... .+-...|+.+.-...|+++
T Consensus 61 ~~~~r~~y~~fL~kyPl~~gyW~kfA~~E~klg~~~~s~~Vfergv~aip~SvdlW~~Y~~f~~n~~~d~~~lr~~fe~A 140 (577)
T KOG1258|consen 61 VDALREVYDIFLSKYPLCYGYWKKFADYEYKLGNAENSVKVFERGVQAIPLSVDLWLSYLAFLKNNNGDPETLRDLFERA 140 (577)
T ss_pred HHHHHHHHHHHHhhCccHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHhhhhHHHHHHHHHHHHhccCCCHHHHHHHHHHH
Confidence 356677777788888988899999999999999999999999999999897777776543 3444677888888888888
Q ss_pred HHhCCCC---HHHHHHHHHHHHHcCChHHHHHHHHHHHhhCCCCCChHHHHH-HHHHHHH-----cCCHHHHHHHHHHHH
Q 003563 162 QKLFPDN---VDATKTGAQLFLKCGQTARSIGILEEYLKVHPSDADLSVIDL-LVAILME-----NNAYEKTLQHIEHAQ 232 (810)
Q Consensus 162 l~~~p~~---~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~~~-la~~~~~-----~g~~~~A~~~~~~~~ 232 (810)
......+ ...|-........++++..-..+|++.++....... .++. .-..... ....+++...-....
T Consensus 141 ~~~vG~dF~S~~lWdkyie~en~qks~k~v~~iyeRileiP~~~~~--~~f~~f~~~l~~~~~~~l~~~d~~~~l~~~~~ 218 (577)
T KOG1258|consen 141 KSYVGLDFLSDPLWDKYIEFENGQKSWKRVANIYERILEIPLHQLN--RHFDRFKQLLNQNEEKILLSIDELIQLRSDVA 218 (577)
T ss_pred HHhcccchhccHHHHHHHHHHhccccHHHHHHHHHHHHhhhhhHhH--HHHHHHHHHHhcCChhhhcCHHHHHHHhhhHH
Confidence 8876654 345656666667788888888888888875322211 1111 1111111 112222222211111
Q ss_pred HH--hcCCCCCcHHH-HHHHHHHHHhcCCHHHHHHHHHHhhccCCchhHhHHHHHHHHHHHcCCcHHHHHHHHHHHhcc-
Q 003563 233 IV--RFSGKELPLKL-KVKAGICYLRLGNMEKAEILFADLQWKNAIDHADLITEVADTLMSLGHSNSALKYYHFLETNA- 308 (810)
Q Consensus 233 ~~--~~~~~~~~~~~-~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~- 308 (810)
.. .+-.. .+.+. -...-.+--..+..+++...+.+. ....-.++.......+.+..++..+...
T Consensus 219 ~~~~~~~~~-~~~e~~~~~v~~~~~~s~~l~~~~~~l~~~-----------~~~~~~~~~~s~~~~~kr~~fE~~IkrpY 286 (577)
T KOG1258|consen 219 ERSKITHSQ-EPLEELEIGVKDSTDPSKSLTEEKTILKRI-----------VSIHEKVYQKSEEEEEKRWGFEEGIKRPY 286 (577)
T ss_pred hhhhccccc-ChhHHHHHHHhhccCccchhhHHHHHHHHH-----------HHHHHHHHHhhHhHHHHHHhhhhhccccc
Confidence 00 00000 00000 000000000001111111111111 1111223333344555555666555431
Q ss_pred ------CCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHhhcCCCHHHHHHHHHHHHHcCCHHHHHHhcCCCCCCCcccCC
Q 003563 309 ------GTDNGYLYLKLAECYLSLKERAHAIMFFYKALDRFEDNIDARLTLASLLLEEAKEEEAITLLSPPKDLDSLDMN 382 (810)
Q Consensus 309 ------~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~ 382 (810)
.+.+...|......-...|+++...-.|++++--.....+.|...+......|+.+-|...+..+........
T Consensus 287 fhvkpl~~aql~nw~~yLdf~i~~g~~~~~~~l~ercli~cA~Y~efWiky~~~m~~~~~~~~~~~~~~~~~~i~~k~~- 365 (577)
T KOG1258|consen 287 FHVKPLDQAQLKNWRYYLDFEITLGDFSRVFILFERCLIPCALYDEFWIKYARWMESSGDVSLANNVLARACKIHVKKT- 365 (577)
T ss_pred cccCcccHHHHHHHHHHhhhhhhcccHHHHHHHHHHHHhHHhhhHHHHHHHHHHHHHcCchhHHHHHHHhhhhhcCCCC-
Confidence 1224456777777888899999999999999988888899999999999999999999988888877655432
Q ss_pred CCCCChhhhHHHHHHHHHHHHHhcCCchhHHhhhhhhhhhh
Q 003563 383 SDKSNPWWLNEKIIMKLCHIYRAKGMPEDFVDAIFPLVCES 423 (810)
Q Consensus 383 ~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~ 423 (810)
+.+...-+.+-...|+++.|...++.+.++.
T Consensus 366 ----------~~i~L~~a~f~e~~~n~~~A~~~lq~i~~e~ 396 (577)
T KOG1258|consen 366 ----------PIIHLLEARFEESNGNFDDAKVILQRIESEY 396 (577)
T ss_pred ----------cHHHHHHHHHHHhhccHHHHHHHHHHHHhhC
Confidence 2466666777778899999998888877663
No 226
>PF13428 TPR_14: Tetratricopeptide repeat
Probab=97.96 E-value=1.9e-05 Score=53.54 Aligned_cols=43 Identities=28% Similarity=0.264 Sum_probs=39.0
Q ss_pred HHHHHHHHHHHHHccCHHHHHHHHHHHHhhcCCCHHHHHHHHH
Q 003563 313 GYLYLKLAECYLSLKERAHAIMFFYKALDRFEDNIDARLTLAS 355 (810)
Q Consensus 313 ~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~ 355 (810)
|.++..+|.+|...|++++|++.|+++++.+|++++++..+|.
T Consensus 1 p~~~~~la~~~~~~G~~~~A~~~~~~~l~~~P~~~~a~~~La~ 43 (44)
T PF13428_consen 1 PAAWLALARAYRRLGQPDEAERLLRRALALDPDDPEAWRALAQ 43 (44)
T ss_pred CHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCcCCHHHHHHhhh
Confidence 4578899999999999999999999999999999999998875
No 227
>KOG1585 consensus Protein required for fusion of vesicles in vesicular transport, gamma-SNAP [Intracellular trafficking, secretion, and vesicular transport]
Probab=97.90 E-value=0.0049 Score=57.17 Aligned_cols=196 Identities=13% Similarity=0.056 Sum_probs=108.5
Q ss_pred HHHHHHcCChHHHHHHHHHHHhhCCCCCCh----HHHHHHHHHHHHcCCHHHHHHHHHHHHHHhcCC-CCCcHHHHHHHH
Q 003563 176 AQLFLKCGQTARSIGILEEYLKVHPSDADL----SVIDLLVAILMENNAYEKTLQHIEHAQIVRFSG-KELPLKLKVKAG 250 (810)
Q Consensus 176 a~~~~~~g~~~~A~~~~~~~l~~~p~~~~~----~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~-~~~~~~~~~~la 250 (810)
+..|...+++++|...+.++.+-...+..+ .++-..+.+......+.++..+++++...+-.. .+.+...-...+
T Consensus 38 AvafRnAk~feKakdcLlkA~~~yEnnrslfhAAKayEqaamLake~~klsEvvdl~eKAs~lY~E~GspdtAAmaleKA 117 (308)
T KOG1585|consen 38 AVAFRNAKKFEKAKDCLLKASKGYENNRSLFHAAKAYEQAAMLAKELSKLSEVVDLYEKASELYVECGSPDTAAMALEKA 117 (308)
T ss_pred HHHHHhhccHHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHhCCcchHHHHHHHH
Confidence 334444444555555554444333322221 123333444444455555555555555443221 122222222222
Q ss_pred HHHHhcCCHHHHHHHHHHhhcc---CC--chhHhHHHHHHHHHHHcCCcHHHHHHHHHHHhc-----cCCCCHHHHHHHH
Q 003563 251 ICYLRLGNMEKAEILFADLQWK---NA--IDHADLITEVADTLMSLGHSNSALKYYHFLETN-----AGTDNGYLYLKLA 320 (810)
Q Consensus 251 ~~~~~~g~~~~A~~~~~~~~~~---~~--~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~-----~~~~~~~~~~~la 320 (810)
--.....++++|+.+|++.+.. +. ....+.+-..++++....++.+|-..+.+-... ..+.....+....
T Consensus 118 ak~lenv~Pd~AlqlYqralavve~~dr~~ma~el~gk~sr~lVrl~kf~Eaa~a~lKe~~~~~~~~~y~~~~k~~va~i 197 (308)
T KOG1585|consen 118 AKALENVKPDDALQLYQRALAVVEEDDRDQMAFELYGKCSRVLVRLEKFTEAATAFLKEGVAADKCDAYNSQCKAYVAAI 197 (308)
T ss_pred HHHhhcCCHHHHHHHHHHHHHHHhccchHHHHHHHHHHhhhHhhhhHHhhHHHHHHHHhhhHHHHHhhcccHHHHHHHHH
Confidence 2334556677777777775431 11 112445667788888888888887777653221 1233344556666
Q ss_pred HHHHHccCHHHHHHHHHHHHhh----cCCCHHHHHHHHHHHHHcCCHHHHHHhcCC
Q 003563 321 ECYLSLKERAHAIMFFYKALDR----FEDNIDARLTLASLLLEEAKEEEAITLLSP 372 (810)
Q Consensus 321 ~~~~~~g~~~~A~~~~~~al~~----~p~~~~~~~~la~~~~~~g~~~~A~~~~~~ 372 (810)
.++....+|..|..+++...++ .|++..+..+|-..| ..|+.++..+.+..
T Consensus 198 lv~L~~~Dyv~aekc~r~~~qip~f~~sed~r~lenLL~ay-d~gD~E~~~kvl~s 252 (308)
T KOG1585|consen 198 LVYLYAHDYVQAEKCYRDCSQIPAFLKSEDSRSLENLLTAY-DEGDIEEIKKVLSS 252 (308)
T ss_pred HHHhhHHHHHHHHHHhcchhcCccccChHHHHHHHHHHHHh-ccCCHHHHHHHHcC
Confidence 6777778999999999987765 345566666666666 56888888887753
No 228
>PF13428 TPR_14: Tetratricopeptide repeat
Probab=97.90 E-value=3e-05 Score=52.59 Aligned_cols=41 Identities=27% Similarity=0.384 Sum_probs=20.1
Q ss_pred HHHHHHHHHHHHcCChHHHHHHHHHHHhcCCCCHHHHHHHH
Q 003563 68 ETYNTLGLAHSALGNHKSAFDFYVIAAHLSPKDSALWKQLL 108 (810)
Q Consensus 68 ~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~p~~~~~~~~la 108 (810)
.++..+|..|...|++++|+..|+++++.+|+++.+|..+|
T Consensus 2 ~~~~~la~~~~~~G~~~~A~~~~~~~l~~~P~~~~a~~~La 42 (44)
T PF13428_consen 2 AAWLALARAYRRLGQPDEAERLLRRALALDPDDPEAWRALA 42 (44)
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHHCcCCHHHHHHhh
Confidence 34444455555555555555555555555555554444444
No 229
>PF05843 Suf: Suppressor of forked protein (Suf); InterPro: IPR008847 This domain consists of several eukaryotic suppressor of forked (Suf) like proteins. The Drosophila melanogaster suppressor of forked [Su(f)] protein shares homology with the Saccharomyces cerevisiae RNA14 protein and the 77 kDa subunit of Homo sapiens cleavage stimulation factor, which are proteins involved in mRNA 3' end formation. This suggests a role for Su(f) in mRNA 3' end formation in Drosophila. The su(f) gene produces three transcripts; two of them are polyadenylated at the end of the transcription unit, and one is a truncated transcript, polyadenylated in intron 4. It is thought that su(f) plays a role in the regulation of poly(A) site utilisation and the GU-rich sequence is important for this regulation to occur [].; GO: 0006397 mRNA processing, 0005634 nucleus; PDB: 2L9B_B 2OND_B 2OOE_A 4E85_B 4EBA_C 4E6H_A 2UY1_B.
Probab=97.88 E-value=0.00029 Score=70.80 Aligned_cols=134 Identities=13% Similarity=0.152 Sum_probs=102.8
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHH-cCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHH
Q 003563 103 LWKQLLTFAVQKGDTAQAMYYIRQAIRAEPKDISLRIHLASFYVE-IGDYEKAAESYEQIQKLFPDNVDATKTGAQLFLK 181 (810)
Q Consensus 103 ~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~-~g~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~ 181 (810)
+|..+.....+.+..+.|...|.++.+..+-...+|...|.+-.. .++.+.|..+|+.+++..|.+...|......+..
T Consensus 3 v~i~~m~~~~r~~g~~~aR~vF~~a~~~~~~~~~vy~~~A~~E~~~~~d~~~A~~Ife~glk~f~~~~~~~~~Y~~~l~~ 82 (280)
T PF05843_consen 3 VWIQYMRFMRRTEGIEAARKVFKRARKDKRCTYHVYVAYALMEYYCNKDPKRARKIFERGLKKFPSDPDFWLEYLDFLIK 82 (280)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHCCCCS-THHHHHHHHHHHHTCS-HHHHHHHHHHHHHHHTT-HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhCChHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHH
Confidence 566777777777778888888888886555667788888888666 4555568889998888888888888888888888
Q ss_pred cCChHHHHHHHHHHHhhCCCCC-ChHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhc
Q 003563 182 CGQTARSIGILEEYLKVHPSDA-DLSVIDLLVAILMENNAYEKTLQHIEHAQIVRF 236 (810)
Q Consensus 182 ~g~~~~A~~~~~~~l~~~p~~~-~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~ 236 (810)
.|+.+.|..+|++++..-|... .-.+|......-...|+.+....+.+++.+.++
T Consensus 83 ~~d~~~aR~lfer~i~~l~~~~~~~~iw~~~i~fE~~~Gdl~~v~~v~~R~~~~~~ 138 (280)
T PF05843_consen 83 LNDINNARALFERAISSLPKEKQSKKIWKKFIEFESKYGDLESVRKVEKRAEELFP 138 (280)
T ss_dssp TT-HHHHHHHHHHHCCTSSCHHHCHHHHHHHHHHHHHHS-HHHHHHHHHHHHHHTT
T ss_pred hCcHHHHHHHHHHHHHhcCchhHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhh
Confidence 8888889889998888766655 345777888888888888888888888888744
No 230
>PF04184 ST7: ST7 protein; InterPro: IPR007311 The ST7 (for suppression of tumorigenicity 7) protein is thought to be a tumour suppressor gene. The molecular function of this protein is uncertain.
Probab=97.87 E-value=0.0012 Score=67.90 Aligned_cols=196 Identities=12% Similarity=0.088 Sum_probs=128.7
Q ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHhhCCCCCChHHHHHHHHHHHHc
Q 003563 139 IHLASFYVEIGDYEKAAESYEQIQKLFPDNVDATKTGAQLFLKCGQTARSIGILEEYLKVHPSDADLSVIDLLVAILMEN 218 (810)
Q Consensus 139 ~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~~~la~~~~~~ 218 (810)
..+..-..+..++..-++.-.++++++|+.++++..||.- ......+|.++++++++....... ........
T Consensus 172 q~IMq~AWRERnp~aRIkaA~eALei~pdCAdAYILLAEE--eA~Ti~Eae~l~rqAvkAgE~~lg------~s~~~~~~ 243 (539)
T PF04184_consen 172 QEIMQKAWRERNPQARIKAAKEALEINPDCADAYILLAEE--EASTIVEAEELLRQAVKAGEASLG------KSQFLQHH 243 (539)
T ss_pred HHHHHHHHhcCCHHHHHHHHHHHHHhhhhhhHHHhhcccc--cccCHHHHHHHHHHHHHHHHHhhc------hhhhhhcc
Confidence 3444555667778888888888888888888888777652 233467778888887765432211 00000111
Q ss_pred CCHHHHHHHHHHHHHHhcCCCCCcHHHHHHHHHHHHhcCCHHHHHHHHHHhhccCCc-hhHhHHHHHHHHHHHcCCcHHH
Q 003563 219 NAYEKTLQHIEHAQIVRFSGKELPLKLKVKAGICYLRLGNMEKAEILFADLQWKNAI-DHADLITEVADTLMSLGHSNSA 297 (810)
Q Consensus 219 g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~-~~~~~~~~la~~~~~~~~~~~A 297 (810)
|..-+. .. ..+......+...+|.|..++|+.++|++.++.+++..|. +...+...+..++...+.|.++
T Consensus 244 g~~~e~-------~~--~Rdt~~~~y~KrRLAmCarklGr~~EAIk~~rdLlke~p~~~~l~IrenLie~LLelq~Yad~ 314 (539)
T PF04184_consen 244 GHFWEA-------WH--RRDTNVLVYAKRRLAMCARKLGRLREAIKMFRDLLKEFPNLDNLNIRENLIEALLELQAYADV 314 (539)
T ss_pred cchhhh-------hh--ccccchhhhhHHHHHHHHHHhCChHHHHHHHHHHHhhCCccchhhHHHHHHHHHHhcCCHHHH
Confidence 111111 00 0011223456678999999999999999999999887765 4667889999999999999999
Q ss_pred HHHHHHHHhccCCCCHHHHHHHHHHHHH-ccC---------------HHHHHHHHHHHHhhcCCCHHHHH
Q 003563 298 LKYYHFLETNAGTDNGYLYLKLAECYLS-LKE---------------RAHAIMFFYKALDRFEDNIDARL 351 (810)
Q Consensus 298 ~~~~~~~~~~~~~~~~~~~~~la~~~~~-~g~---------------~~~A~~~~~~al~~~p~~~~~~~ 351 (810)
..++.+.-+...|..+...+..|.+-.+ .++ -..|.+.+.+|++.+|.-+..+.
T Consensus 315 q~lL~kYdDi~lpkSAti~YTaALLkaRav~d~fs~e~a~rRGls~ae~~aveAi~RAvefNPHVp~YLL 384 (539)
T PF04184_consen 315 QALLAKYDDISLPKSATICYTAALLKARAVGDKFSPEAASRRGLSPAEMNAVEAIHRAVEFNPHVPKYLL 384 (539)
T ss_pred HHHHHHhccccCCchHHHHHHHHHHHHHhhccccCchhhhhcCCChhHHHHHHHHHHHHHhCCCCchhhh
Confidence 9999887655456666666655544322 122 13467889999999998876554
No 231
>PF05843 Suf: Suppressor of forked protein (Suf); InterPro: IPR008847 This domain consists of several eukaryotic suppressor of forked (Suf) like proteins. The Drosophila melanogaster suppressor of forked [Su(f)] protein shares homology with the Saccharomyces cerevisiae RNA14 protein and the 77 kDa subunit of Homo sapiens cleavage stimulation factor, which are proteins involved in mRNA 3' end formation. This suggests a role for Su(f) in mRNA 3' end formation in Drosophila. The su(f) gene produces three transcripts; two of them are polyadenylated at the end of the transcription unit, and one is a truncated transcript, polyadenylated in intron 4. It is thought that su(f) plays a role in the regulation of poly(A) site utilisation and the GU-rich sequence is important for this regulation to occur [].; GO: 0006397 mRNA processing, 0005634 nucleus; PDB: 2L9B_B 2OND_B 2OOE_A 4E85_B 4EBA_C 4E6H_A 2UY1_B.
Probab=97.86 E-value=0.00027 Score=70.92 Aligned_cols=134 Identities=12% Similarity=0.118 Sum_probs=85.7
Q ss_pred HHHHHHHHHHHcCChHHHHHHHHHHHhcCCCCHHHHHHHHHHHHH-cCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHH
Q 003563 69 TYNTLGLAHSALGNHKSAFDFYVIAAHLSPKDSALWKQLLTFAVQ-KGDTAQAMYYIRQAIRAEPKDISLRIHLASFYVE 147 (810)
Q Consensus 69 ~~~~l~~~~~~~g~~~~A~~~~~~a~~~~p~~~~~~~~la~~~~~-~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~ 147 (810)
+|..+.....+.+..+.|...|.+|....+....+|...|.+-+. .++.+.|...|+.+++..|.+...|......+..
T Consensus 3 v~i~~m~~~~r~~g~~~aR~vF~~a~~~~~~~~~vy~~~A~~E~~~~~d~~~A~~Ife~glk~f~~~~~~~~~Y~~~l~~ 82 (280)
T PF05843_consen 3 VWIQYMRFMRRTEGIEAARKVFKRARKDKRCTYHVYVAYALMEYYCNKDPKRARKIFERGLKKFPSDPDFWLEYLDFLIK 82 (280)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHCCCCS-THHHHHHHHHHHHTCS-HHHHHHHHHHHHHHHTT-HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhCChHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHH
Confidence 455555666666667777777777765555556666666776555 3445557777777777777777777777777777
Q ss_pred cCCHHHHHHHHHHHHHhCCCCH---HHHHHHHHHHHHcCChHHHHHHHHHHHhhCCCC
Q 003563 148 IGDYEKAAESYEQIQKLFPDNV---DATKTGAQLFLKCGQTARSIGILEEYLKVHPSD 202 (810)
Q Consensus 148 ~g~~~~A~~~~~~~l~~~p~~~---~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~ 202 (810)
.|+.+.|..+|++++..-|... .+|......-...|+.+....+.+++.+..|++
T Consensus 83 ~~d~~~aR~lfer~i~~l~~~~~~~~iw~~~i~fE~~~Gdl~~v~~v~~R~~~~~~~~ 140 (280)
T PF05843_consen 83 LNDINNARALFERAISSLPKEKQSKKIWKKFIEFESKYGDLESVRKVEKRAEELFPED 140 (280)
T ss_dssp TT-HHHHHHHHHHHCCTSSCHHHCHHHHHHHHHHHHHHS-HHHHHHHHHHHHHHTTTS
T ss_pred hCcHHHHHHHHHHHHHhcCchhHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhhhh
Confidence 7777777777777776655443 466666666677777777777777777766663
No 232
>KOG0376 consensus Serine-threonine phosphatase 2A, catalytic subunit [General function prediction only]
Probab=97.81 E-value=3.4e-05 Score=78.63 Aligned_cols=108 Identities=19% Similarity=0.220 Sum_probs=86.7
Q ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCC
Q 003563 37 LGEASLQYAYGNFEQAISLLKEVVRLSPNLPETYNTLGLAHSALGNHKSAFDFYVIAAHLSPKDSALWKQLLTFAVQKGD 116 (810)
Q Consensus 37 l~~a~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~p~~~~~~~~la~~~~~~g~ 116 (810)
=.+|+.++..++|+.|+..|.++|+++|+++..+...+..+...+++..|+..+.++++.+|....+++..|.+....+.
T Consensus 8 k~ean~~l~~~~fd~avdlysKaI~ldpnca~~~anRa~a~lK~e~~~~Al~Da~kaie~dP~~~K~Y~rrg~a~m~l~~ 87 (476)
T KOG0376|consen 8 KNEANEALKDKVFDVAVDLYSKAIELDPNCAIYFANRALAHLKVESFGGALHDALKAIELDPTYIKAYVRRGTAVMALGE 87 (476)
T ss_pred hhHHhhhcccchHHHHHHHHHHHHhcCCcceeeechhhhhheeechhhhHHHHHHhhhhcCchhhheeeeccHHHHhHHH
Confidence 34677778888888888888888888888888888888888888888888888888888888888888888888888888
Q ss_pred HHHHHHHHHHHHHcCCCCHHHHHHHHHH
Q 003563 117 TAQAMYYIRQAIRAEPKDISLRIHLASF 144 (810)
Q Consensus 117 ~~~A~~~~~~al~~~p~~~~~~~~la~~ 144 (810)
+.+|...|++.....|+++.+...+..+
T Consensus 88 ~~~A~~~l~~~~~l~Pnd~~~~r~~~Ec 115 (476)
T KOG0376|consen 88 FKKALLDLEKVKKLAPNDPDATRKIDEC 115 (476)
T ss_pred HHHHHHHHHHhhhcCcCcHHHHHHHHHH
Confidence 8888888888888888887776555544
No 233
>PF10300 DUF3808: Protein of unknown function (DUF3808); InterPro: IPR019412 This entry represents a family of proteins conserved from fungi to humans. In humans this protein is expressed in primary breast carcinomas but not in normal breast tissue, and has a putative eukaryotic RNP-1 RNA binding region and a candidate anchoring transmembrane domain. The human protein is coordinately regulated with oestrogen receptor, but is not necessarily oestradiol-responsive []. Members of this family carry a tetratricopeptide repeat (IPR013105 from INTERPRO) at their C terminus.
Probab=97.81 E-value=0.02 Score=62.13 Aligned_cols=180 Identities=17% Similarity=0.117 Sum_probs=114.4
Q ss_pred HHHHHHhhCCCCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhcCCCCCcHHH-----HHHHHHHHH----hcCCHHH
Q 003563 191 ILEEYLKVHPSDADLSVIDLLVAILMENNAYEKTLQHIEHAQIVRFSGKELPLKL-----KVKAGICYL----RLGNMEK 261 (810)
Q Consensus 191 ~~~~~l~~~p~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~-----~~~la~~~~----~~g~~~~ 261 (810)
.|.-++..-|.. ...+..+.--.|+-+.++..+.++.+..+ -..+.-. ++....... .....+.
T Consensus 179 ~f~L~lSlLPp~-----~~kll~~vGF~gdR~~GL~~L~~~~~~~~--i~~~la~L~LL~y~~~~~~~~~~~~~~~~~~~ 251 (468)
T PF10300_consen 179 LFNLVLSLLPPK-----VLKLLSFVGFSGDRELGLRLLWEASKSEN--IRSPLAALVLLWYHLVVPSFLGIDGEDVPLEE 251 (468)
T ss_pred HHHHHHHhCCHH-----HHHHHhhcCcCCcHHHHHHHHHHHhccCC--cchHHHHHHHHHHHHHHHHHcCCcccCCCHHH
Confidence 445555555542 22444455556777777777777665311 1111111 111111111 2446677
Q ss_pred HHHHHHHhhccCCchhHhHHHHHHHHHHHcCCcHHHHHHHHHHHhccC---CCCHHHHHHHHHHHHHccCHHHHHHHHHH
Q 003563 262 AEILFADLQWKNAIDHADLITEVADTLMSLGHSNSALKYYHFLETNAG---TDNGYLYLKLAECYLSLKERAHAIMFFYK 338 (810)
Q Consensus 262 A~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~---~~~~~~~~~la~~~~~~g~~~~A~~~~~~ 338 (810)
|..++.......|. ..-..+..|+++...|+.++|++.|++++.... .-..-.++.+|.++..+++|++|..++.+
T Consensus 252 a~~lL~~~~~~yP~-s~lfl~~~gR~~~~~g~~~~Ai~~~~~a~~~q~~~~Ql~~l~~~El~w~~~~~~~w~~A~~~f~~ 330 (468)
T PF10300_consen 252 AEELLEEMLKRYPN-SALFLFFEGRLERLKGNLEEAIESFERAIESQSEWKQLHHLCYFELAWCHMFQHDWEEAAEYFLR 330 (468)
T ss_pred HHHHHHHHHHhCCC-cHHHHHHHHHHHHHhcCHHHHHHHHHHhccchhhHHhHHHHHHHHHHHHHHHHchHHHHHHHHHH
Confidence 88888888877774 667777888888888888888888887664211 12345677888888888888888888888
Q ss_pred HHhhcCCCH-HHHHHHHHHHHHcCCH-------HHHHHhcCCCCCCCc
Q 003563 339 ALDRFEDNI-DARLTLASLLLEEAKE-------EEAITLLSPPKDLDS 378 (810)
Q Consensus 339 al~~~p~~~-~~~~~la~~~~~~g~~-------~~A~~~~~~a~~~~~ 378 (810)
..+.+.-.. -..+..|.++...|+. ++|.+++.++-....
T Consensus 331 L~~~s~WSka~Y~Y~~a~c~~~l~~~~~~~~~~~~a~~l~~~vp~l~~ 378 (468)
T PF10300_consen 331 LLKESKWSKAFYAYLAAACLLMLGREEEAKEHKKEAEELFRKVPKLKQ 378 (468)
T ss_pred HHhccccHHHHHHHHHHHHHHhhccchhhhhhHHHHHHHHHHHHHHHh
Confidence 888665433 3345567788888888 888888887655443
No 234
>KOG1550 consensus Extracellular protein SEL-1 and related proteins [Cell wall/membrane/envelope biogenesis; Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=97.81 E-value=0.0094 Score=66.22 Aligned_cols=177 Identities=18% Similarity=0.122 Sum_probs=117.9
Q ss_pred CHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHc-----CChHHHHHHHHHHHhc-----CCCCHHHHHHHHHHHHHcC--
Q 003563 48 NFEQAISLLKEVVRLSPNLPETYNTLGLAHSAL-----GNHKSAFDFYVIAAHL-----SPKDSALWKQLLTFAVQKG-- 115 (810)
Q Consensus 48 ~~~~A~~~~~~~l~~~p~~~~~~~~l~~~~~~~-----g~~~~A~~~~~~a~~~-----~p~~~~~~~~la~~~~~~g-- 115 (810)
+...|..+++.+... .+..+...+|.||..- .|.+.|+.+++.+... .-..+.+.+.+|.+|.+..
T Consensus 227 ~~~~a~~~~~~~a~~--g~~~a~~~~g~~y~~G~~g~~~d~e~a~~~l~~aa~~~~~~a~~~~~~a~~~lg~~Y~~g~~~ 304 (552)
T KOG1550|consen 227 ELSEAFKYYREAAKL--GHSEAQYALGICYLAGTYGVTQDLESAIEYLKLAAESFKKAATKGLPPAQYGLGRLYLQGLGV 304 (552)
T ss_pred hhhHHHHHHHHHHhh--cchHHHHHHHHHHhhccccccccHHHHHHHHHHHHHHHHHHHhhcCCccccHHHHHHhcCCCC
Confidence 356677777777654 4678888888888754 5788899999888661 1114556777888887743
Q ss_pred ---CHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHcC---CHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHH----cCCh
Q 003563 116 ---DTAQAMYYIRQAIRAEPKDISLRIHLASFYVEIG---DYEKAAESYEQIQKLFPDNVDATKTGAQLFLK----CGQT 185 (810)
Q Consensus 116 ---~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g---~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~----~g~~ 185 (810)
+.+.|..+|.++... +++++.+.+|.++..-. +...|.++|..+... .+..+.+.++.+|.. .-+.
T Consensus 305 ~~~d~~~A~~~~~~aA~~--g~~~a~~~lg~~~~~g~~~~d~~~A~~yy~~Aa~~--G~~~A~~~la~~y~~G~gv~r~~ 380 (552)
T KOG1550|consen 305 EKIDYEKALKLYTKAAEL--GNPDAQYLLGVLYETGTKERDYRRAFEYYSLAAKA--GHILAIYRLALCYELGLGVERNL 380 (552)
T ss_pred ccccHHHHHHHHHHHHhc--CCchHHHHHHHHHHcCCccccHHHHHHHHHHHHHc--CChHHHHHHHHHHHhCCCcCCCH
Confidence 667788888888765 35667777787776655 567888888887665 466777777777754 2466
Q ss_pred HHHHHHHHHHHhhCCCCCChHHHHHHHHHHHHc-CCHHHHHHHHHHHHHH
Q 003563 186 ARSIGILEEYLKVHPSDADLSVIDLLVAILMEN-NAYEKTLQHIEHAQIV 234 (810)
Q Consensus 186 ~~A~~~~~~~l~~~p~~~~~~~~~~la~~~~~~-g~~~~A~~~~~~~~~~ 234 (810)
..|..++.++.+..+ +. +...++.++... +.+..+...+....+.
T Consensus 381 ~~A~~~~k~aA~~g~--~~--A~~~~~~~~~~g~~~~~~~~~~~~~~a~~ 426 (552)
T KOG1550|consen 381 ELAFAYYKKAAEKGN--PS--AAYLLGAFYEYGVGRYDTALALYLYLAEL 426 (552)
T ss_pred HHHHHHHHHHHHccC--hh--hHHHHHHHHHHccccccHHHHHHHHHHHh
Confidence 778888888877762 21 333444443332 6666666555554443
No 235
>KOG1585 consensus Protein required for fusion of vesicles in vesicular transport, gamma-SNAP [Intracellular trafficking, secretion, and vesicular transport]
Probab=97.79 E-value=0.0063 Score=56.47 Aligned_cols=49 Identities=8% Similarity=0.129 Sum_probs=22.2
Q ss_pred cCChHHHHHHHHHHHhhCCCCCC----hHHHHHHHHHHHHcCCHHHHHHHHHH
Q 003563 182 CGQTARSIGILEEYLKVHPSDAD----LSVIDLLVAILMENNAYEKTLQHIEH 230 (810)
Q Consensus 182 ~g~~~~A~~~~~~~l~~~p~~~~----~~~~~~la~~~~~~g~~~~A~~~~~~ 230 (810)
..++++|+++|++++..-..+.. ...+...+.++.+...+.+|-..+.+
T Consensus 123 nv~Pd~AlqlYqralavve~~dr~~ma~el~gk~sr~lVrl~kf~Eaa~a~lK 175 (308)
T KOG1585|consen 123 NVKPDDALQLYQRALAVVEEDDRDQMAFELYGKCSRVLVRLEKFTEAATAFLK 175 (308)
T ss_pred cCCHHHHHHHHHHHHHHHhccchHHHHHHHHHHhhhHhhhhHHhhHHHHHHHH
Confidence 34455555555555443222211 12233444555555555555544444
No 236
>KOG4642 consensus Chaperone-dependent E3 ubiquitin protein ligase (contains TPR repeats) [Posttranslational modification, protein turnover, chaperones]
Probab=97.79 E-value=0.00026 Score=65.11 Aligned_cols=93 Identities=17% Similarity=0.126 Sum_probs=76.8
Q ss_pred HHHHHHHHcCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCh
Q 003563 106 QLLTFAVQKGDTAQAMYYIRQAIRAEPKDISLRIHLASFYVEIGDYEKAAESYEQIQKLFPDNVDATKTGAQLFLKCGQT 185 (810)
Q Consensus 106 ~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~ 185 (810)
.-|..++....|+.|+.+|.+++.++|..+..+.+.+.++++..+++.+.....+++++.|+....++.+|........+
T Consensus 15 E~gnk~f~~k~y~~ai~~y~raI~~nP~~~~Y~tnralchlk~~~~~~v~~dcrralql~~N~vk~h~flg~~~l~s~~~ 94 (284)
T KOG4642|consen 15 EQGNKCFIPKRYDDAIDCYSRAICINPTVASYYTNRALCHLKLKHWEPVEEDCRRALQLDPNLVKAHYFLGQWLLQSKGY 94 (284)
T ss_pred hccccccchhhhchHHHHHHHHHhcCCCcchhhhhHHHHHHHhhhhhhhhhhHHHHHhcChHHHHHHHHHHHHHHhhccc
Confidence 34556666677888888888888888888888888888888888888888888888888888888888888888888888
Q ss_pred HHHHHHHHHHHhh
Q 003563 186 ARSIGILEEYLKV 198 (810)
Q Consensus 186 ~~A~~~~~~~l~~ 198 (810)
++|+..+.++..+
T Consensus 95 ~eaI~~Lqra~sl 107 (284)
T KOG4642|consen 95 DEAIKVLQRAYSL 107 (284)
T ss_pred cHHHHHHHHHHHH
Confidence 8888888888654
No 237
>PF04184 ST7: ST7 protein; InterPro: IPR007311 The ST7 (for suppression of tumorigenicity 7) protein is thought to be a tumour suppressor gene. The molecular function of this protein is uncertain.
Probab=97.75 E-value=0.0068 Score=62.61 Aligned_cols=121 Identities=22% Similarity=0.210 Sum_probs=62.9
Q ss_pred HHHHHcCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC---------------------
Q 003563 109 TFAVQKGDTAQAMYYIRQAIRAEPKDISLRIHLASFYVEIGDYEKAAESYEQIQKLFPD--------------------- 167 (810)
Q Consensus 109 ~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~--------------------- 167 (810)
.-..+..+...-++...+|++++|+.++++..++.- ......+|.++|+++++....
T Consensus 176 q~AWRERnp~aRIkaA~eALei~pdCAdAYILLAEE--eA~Ti~Eae~l~rqAvkAgE~~lg~s~~~~~~g~~~e~~~~R 253 (539)
T PF04184_consen 176 QKAWRERNPQARIKAAKEALEINPDCADAYILLAEE--EASTIVEAEELLRQAVKAGEASLGKSQFLQHHGHFWEAWHRR 253 (539)
T ss_pred HHHHhcCCHHHHHHHHHHHHHhhhhhhHHHhhcccc--cccCHHHHHHHHHHHHHHHHHhhchhhhhhcccchhhhhhcc
Confidence 333444555555555566666666555555554432 122244555555555443211
Q ss_pred --C--HHHHHHHHHHHHHcCChHHHHHHHHHHHhhCCCCCChHHHHHHHHHHHHcCCHHHHHHHHHHH
Q 003563 168 --N--VDATKTGAQLFLKCGQTARSIGILEEYLKVHPSDADLSVIDLLVAILMENNAYEKTLQHIEHA 231 (810)
Q Consensus 168 --~--~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~ 231 (810)
+ .-+...+|.+..+.|+.++|++.++.+++..|......+..++.+++...+.|.++...+.+.
T Consensus 254 dt~~~~y~KrRLAmCarklGr~~EAIk~~rdLlke~p~~~~l~IrenLie~LLelq~Yad~q~lL~kY 321 (539)
T PF04184_consen 254 DTNVLVYAKRRLAMCARKLGRLREAIKMFRDLLKEFPNLDNLNIRENLIEALLELQAYADVQALLAKY 321 (539)
T ss_pred ccchhhhhHHHHHHHHHHhCChHHHHHHHHHHHhhCCccchhhHHHHHHHHHHhcCCHHHHHHHHHHh
Confidence 0 223345566666666666666666666655554333345556666666666666666555553
No 238
>KOG2610 consensus Uncharacterized conserved protein [Function unknown]
Probab=97.75 E-value=0.0017 Score=62.86 Aligned_cols=164 Identities=12% Similarity=-0.037 Sum_probs=130.3
Q ss_pred HHHHHhcCCHHHHHHHHHHhhccCCchhHhHHHHHHHHHHHcCCcHHHHHHHHHHHhccCCCC---HHHHHHHHHHHHHc
Q 003563 250 GICYLRLGNMEKAEILFADLQWKNAIDHADLITEVADTLMSLGHSNSALKYYHFLETNAGTDN---GYLYLKLAECYLSL 326 (810)
Q Consensus 250 a~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~---~~~~~~la~~~~~~ 326 (810)
+.+....|++.+|-...++++...|. +.-++...-.+++..|+...-...+++++..=.++. ..+.-.++.++...
T Consensus 110 aai~~~~g~~h~a~~~wdklL~d~Pt-Dlla~kfsh~a~fy~G~~~~~k~ai~kIip~wn~dlp~~sYv~GmyaFgL~E~ 188 (491)
T KOG2610|consen 110 AAILWGRGKHHEAAIEWDKLLDDYPT-DLLAVKFSHDAHFYNGNQIGKKNAIEKIIPKWNADLPCYSYVHGMYAFGLEEC 188 (491)
T ss_pred HHHhhccccccHHHHHHHHHHHhCch-hhhhhhhhhhHHHhccchhhhhhHHHHhccccCCCCcHHHHHHHHHHhhHHHh
Confidence 44556779999999999999999886 667777777888899999999999998886533443 55666778889999
Q ss_pred cCHHHHHHHHHHHHhhcCCCHHHHHHHHHHHHHcCCHHHHHHhcCCCCCCCcccCCCCCCChhhhHHHHHHHHHHHHHhc
Q 003563 327 KERAHAIMFFYKALDRFEDNIDARLTLASLLLEEAKEEEAITLLSPPKDLDSLDMNSDKSNPWWLNEKIIMKLCHIYRAK 406 (810)
Q Consensus 327 g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~ 406 (810)
|-|++|.+.-+++++++|.+.-+...++.++...|++.++.+.+.+--+.-..+ +-+...-+-..+..+.+.
T Consensus 189 g~y~dAEk~A~ralqiN~~D~Wa~Ha~aHVlem~~r~Keg~eFM~~ted~Wr~s--------~mlasHNyWH~Al~~iE~ 260 (491)
T KOG2610|consen 189 GIYDDAEKQADRALQINRFDCWASHAKAHVLEMNGRHKEGKEFMYKTEDDWRQS--------WMLASHNYWHTALFHIEG 260 (491)
T ss_pred ccchhHHHHHHhhccCCCcchHHHHHHHHHHHhcchhhhHHHHHHhcccchhhh--------hHHHhhhhHHHHHhhhcc
Confidence 999999999999999999999999999999999999999999998665443321 011122344667788888
Q ss_pred CCchhHHhhhhhhhhh
Q 003563 407 GMPEDFVDAIFPLVCE 422 (810)
Q Consensus 407 g~~~~A~~~~~~~l~~ 422 (810)
+.++.|+++|..=+-.
T Consensus 261 aeye~aleIyD~ei~k 276 (491)
T KOG2610|consen 261 AEYEKALEIYDREIWK 276 (491)
T ss_pred cchhHHHHHHHHHHHH
Confidence 9999999999765544
No 239
>PF13431 TPR_17: Tetratricopeptide repeat
Probab=97.75 E-value=3.4e-05 Score=48.53 Aligned_cols=34 Identities=35% Similarity=0.431 Sum_probs=30.7
Q ss_pred HHHHHHhhcCCCHHHHHHHHHHHHHcCCHHHHHH
Q 003563 335 FFYKALDRFEDNIDARLTLASLLLEEAKEEEAIT 368 (810)
Q Consensus 335 ~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~ 368 (810)
+|+++++++|+++.+++.||.+|...|++++|++
T Consensus 1 ~y~kAie~~P~n~~a~~nla~~~~~~g~~~~A~~ 34 (34)
T PF13431_consen 1 CYKKAIELNPNNAEAYNNLANLYLNQGDYEEAIA 34 (34)
T ss_pred ChHHHHHHCCCCHHHHHHHHHHHHHCcCHHhhcC
Confidence 4789999999999999999999999999999863
No 240
>KOG0985 consensus Vesicle coat protein clathrin, heavy chain [Intracellular trafficking, secretion, and vesicular transport]
Probab=97.70 E-value=0.034 Score=62.04 Aligned_cols=298 Identities=15% Similarity=0.105 Sum_probs=205.9
Q ss_pred HHHHHHHHHHHc-CCHHHHHHHHHHHHH---------hCCCChHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCCCHHHH
Q 003563 35 KMLGEASLQYAY-GNFEQAISLLKEVVR---------LSPNLPETYNTLGLAHSALGNHKSAFDFYVIAAHLSPKDSALW 104 (810)
Q Consensus 35 ~~l~~a~~~~~~-g~~~~A~~~~~~~l~---------~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~p~~~~~~ 104 (810)
.++..|..-+.. .-...|+..+-+-+. ..-+.+..|..+|.+..+.|...+|++.|-+| +++..+
T Consensus 1062 ~LyEEAF~ifkkf~~n~~A~~VLie~i~~ldRA~efAe~~n~p~vWsqlakAQL~~~~v~dAieSyika-----dDps~y 1136 (1666)
T KOG0985|consen 1062 QLYEEAFAIFKKFDMNVSAIQVLIENIGSLDRAYEFAERCNEPAVWSQLAKAQLQGGLVKDAIESYIKA-----DDPSNY 1136 (1666)
T ss_pred hHHHHHHHHHHHhcccHHHHHHHHHHhhhHHHHHHHHHhhCChHHHHHHHHHHHhcCchHHHHHHHHhc-----CCcHHH
Confidence 355666554443 345566665433221 12357899999999999999999999999764 678889
Q ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCC
Q 003563 105 KQLLTFAVQKGDTAQAMYYIRQAIRAEPKDISLRIHLASFYVEIGDYEKAAESYEQIQKLFPDNVDATKTGAQLFLKCGQ 184 (810)
Q Consensus 105 ~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~ 184 (810)
.....+..+.|.|++-+.++.-+-+... .+..-..+..+|.+.++..+-.+.. ..|+.. -....|.-++..|.
T Consensus 1137 ~eVi~~a~~~~~~edLv~yL~MaRkk~~-E~~id~eLi~AyAkt~rl~elE~fi-----~gpN~A-~i~~vGdrcf~~~~ 1209 (1666)
T KOG0985|consen 1137 LEVIDVASRTGKYEDLVKYLLMARKKVR-EPYIDSELIFAYAKTNRLTELEEFI-----AGPNVA-NIQQVGDRCFEEKM 1209 (1666)
T ss_pred HHHHHHHHhcCcHHHHHHHHHHHHHhhc-CccchHHHHHHHHHhchHHHHHHHh-----cCCCch-hHHHHhHHHhhhhh
Confidence 9999999999999999999988876432 2333345566677777776654432 234443 34577888899999
Q ss_pred hHHHHHHHHHHHhhCCCCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhcCCCCCcHHHHHHHHHHHHhcCCHHHHHH
Q 003563 185 TARSIGILEEYLKVHPSDADLSVIDLLVAILMENNAYEKTLQHIEHAQIVRFSGKELPLKLKVKAGICYLRLGNMEKAEI 264 (810)
Q Consensus 185 ~~~A~~~~~~~l~~~p~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~ 264 (810)
|+.|.-+|...- -|..++..+..+|+|..|...-+++-.. ..|-..+.+....+.+.-|.-
T Consensus 1210 y~aAkl~y~~vS----------N~a~La~TLV~LgeyQ~AVD~aRKAns~---------ktWK~VcfaCvd~~EFrlAQi 1270 (1666)
T KOG0985|consen 1210 YEAAKLLYSNVS----------NFAKLASTLVYLGEYQGAVDAARKANST---------KTWKEVCFACVDKEEFRLAQI 1270 (1666)
T ss_pred hHHHHHHHHHhh----------hHHHHHHHHHHHHHHHHHHHHhhhccch---------hHHHHHHHHHhchhhhhHHHh
Confidence 999988876541 3668999999999999999988876432 344445555555555544433
Q ss_pred HHHHhhccCCchhHhHHHHHHHHHHHcCCcHHHHHHHHHHHhccCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHhh--
Q 003563 265 LFADLQWKNAIDHADLITEVADTLMSLGHSNSALKYYHFLETNAGTDNGYLYLKLAECYLSLKERAHAIMFFYKALDR-- 342 (810)
Q Consensus 265 ~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~-- 342 (810)
+=-.+ --+.+-+-.+...|...|-+++-+.+++..+.. .......+..+|.+|.+- ++++-.++++-....
T Consensus 1271 CGL~i-----ivhadeLeeli~~Yq~rGyFeElIsl~Ea~LGL-ERAHMgmfTELaiLYsky-kp~km~EHl~LFwsRvN 1343 (1666)
T KOG0985|consen 1271 CGLNI-----IVHADELEELIEYYQDRGYFEELISLLEAGLGL-ERAHMGMFTELAILYSKY-KPEKMMEHLKLFWSRVN 1343 (1666)
T ss_pred cCceE-----EEehHhHHHHHHHHHhcCcHHHHHHHHHhhhch-hHHHHHHHHHHHHHHHhc-CHHHHHHHHHHHHHhcc
Confidence 21111 124566777888899999999999999988876 556677788888887654 466666555543322
Q ss_pred ------cCCCHHHHHHHHHHHHHcCCHHHHHHhc
Q 003563 343 ------FEDNIDARLTLASLLLEEAKEEEAITLL 370 (810)
Q Consensus 343 ------~p~~~~~~~~la~~~~~~g~~~~A~~~~ 370 (810)
.-+....|..+..+|.+-..|+.|.-.+
T Consensus 1344 ipKviRA~eqahlW~ElvfLY~~y~eyDNAa~tm 1377 (1666)
T KOG0985|consen 1344 IPKVIRAAEQAHLWSELVFLYDKYEEYDNAALTM 1377 (1666)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHhhhhhhHHHHHH
Confidence 1134567788888888888888765443
No 241
>KOG2041 consensus WD40 repeat protein [General function prediction only]
Probab=97.69 E-value=0.099 Score=56.08 Aligned_cols=249 Identities=18% Similarity=0.168 Sum_probs=159.6
Q ss_pred hHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHHH----------HHHHHHHHHHcCCHH
Q 003563 83 HKSAFDFYVIAAHLSPKDSALWKQLLTFAVQKGDTAQAMYYIRQAIRAEPKDISL----------RIHLASFYVEIGDYE 152 (810)
Q Consensus 83 ~~~A~~~~~~a~~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~----------~~~la~~~~~~g~~~ 152 (810)
.++|+++.+ -+| ++..|..+|......-.++.|...|-+.-.. |. ... -...|.+-.--|+++
T Consensus 679 ledA~qfiE----dnP-HprLWrllAe~Al~Kl~l~tAE~AFVrc~dY-~G-ik~vkrl~~i~s~~~q~aei~~~~g~fe 751 (1189)
T KOG2041|consen 679 LEDAIQFIE----DNP-HPRLWRLLAEYALFKLALDTAEHAFVRCGDY-AG-IKLVKRLRTIHSKEQQRAEISAFYGEFE 751 (1189)
T ss_pred hHHHHHHHh----cCC-chHHHHHHHHHHHHHHhhhhHhhhhhhhccc-cc-hhHHHHhhhhhhHHHHhHhHhhhhcchh
Confidence 455555543 344 6889999999888888888888777665331 11 111 123445555568899
Q ss_pred HHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHhhCCCCCChHHHHHHHHHHHHcCCHHHHHHHHHHHH
Q 003563 153 KAAESYEQIQKLFPDNVDATKTGAQLFLKCGQTARSIGILEEYLKVHPSDADLSVIDLLVAILMENNAYEKTLQHIEHAQ 232 (810)
Q Consensus 153 ~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~ 232 (810)
+|.+.|-.+-..+ ....++.+.|++-...++++..-.-..+...-.++..+|..+.....|++|.++|...-
T Consensus 752 eaek~yld~drrD--------LAielr~klgDwfrV~qL~r~g~~d~dD~~~e~A~r~ig~~fa~~~~We~A~~yY~~~~ 823 (1189)
T KOG2041|consen 752 EAEKLYLDADRRD--------LAIELRKKLGDWFRVYQLIRNGGSDDDDEGKEDAFRNIGETFAEMMEWEEAAKYYSYCG 823 (1189)
T ss_pred Hhhhhhhccchhh--------hhHHHHHhhhhHHHHHHHHHccCCCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcc
Confidence 9988886553221 22345667788877776665432222222223578899999999999999999998865
Q ss_pred HHhcCCCCCcHHHHHHHHHHHHhcCCHHHHHHHHHHhhccCCchhHhHHHHHHHHHHHcCCcHHHHHHHHHHHhccCCCC
Q 003563 233 IVRFSGKELPLKLKVKAGICYLRLGNMEKAEILFADLQWKNAIDHADLITEVADTLMSLGHSNSALKYYHFLETNAGTDN 312 (810)
Q Consensus 233 ~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~ 312 (810)
.. -+...+++...++++-..+...+ | ++...+-.+|..+...|.-++|.+.|-+. +.|..
T Consensus 824 ~~------------e~~~ecly~le~f~~LE~la~~L----p-e~s~llp~~a~mf~svGMC~qAV~a~Lr~---s~pka 883 (1189)
T KOG2041|consen 824 DT------------ENQIECLYRLELFGELEVLARTL----P-EDSELLPVMADMFTSVGMCDQAVEAYLRR---SLPKA 883 (1189)
T ss_pred ch------------HhHHHHHHHHHhhhhHHHHHHhc----C-cccchHHHHHHHHHhhchHHHHHHHHHhc---cCcHH
Confidence 43 24567777777777766665554 3 36677888999999999999999988432 22322
Q ss_pred HHHHHHHHHHHHHccCHHHHHHHHHHHHhhcCCCHHHHHHHHHHHHHcCCHHHHHHhcCCCC
Q 003563 313 GYLYLKLAECYLSLKERAHAIMFFYKALDRFEDNIDARLTLASLLLEEAKEEEAITLLSPPK 374 (810)
Q Consensus 313 ~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~a~ 374 (810)
+ -.....++++.+|.+.-++.- -|.-....-..+.-+...++.-+|++..+++-
T Consensus 884 A------v~tCv~LnQW~~avelaq~~~--l~qv~tliak~aaqll~~~~~~eaIe~~Rka~ 937 (1189)
T KOG2041|consen 884 A------VHTCVELNQWGEAVELAQRFQ--LPQVQTLIAKQAAQLLADANHMEAIEKDRKAG 937 (1189)
T ss_pred H------HHHHHHHHHHHHHHHHHHhcc--chhHHHHHHHHHHHHHhhcchHHHHHHhhhcc
Confidence 1 123456778888887766531 23222233334445566788888888877663
No 242
>COG2909 MalT ATP-dependent transcriptional regulator [Transcription]
Probab=97.69 E-value=0.11 Score=58.01 Aligned_cols=302 Identities=14% Similarity=0.058 Sum_probs=179.3
Q ss_pred hHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCCCH-HHHHHHHHHHHHcCCHHHHHHHHHHHHHcCC-----CCHHHHHH
Q 003563 67 PETYNTLGLAHSALGNHKSAFDFYVIAAHLSPKDS-ALWKQLLTFAVQKGDTAQAMYYIRQAIRAEP-----KDISLRIH 140 (810)
Q Consensus 67 ~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~p~~~-~~~~~la~~~~~~g~~~~A~~~~~~al~~~p-----~~~~~~~~ 140 (810)
.+.+..-+.-+...|..++|+.+.-.| .+|... +.....+.-....++.. .+...++.-| .+|.....
T Consensus 347 ~~lH~~Aa~w~~~~g~~~eAI~hAlaA--~d~~~aa~lle~~~~~L~~~~~ls----ll~~~~~~lP~~~l~~~P~Lvll 420 (894)
T COG2909 347 KELHRAAAEWFAEHGLPSEAIDHALAA--GDPEMAADLLEQLEWQLFNGSELS----LLLAWLKALPAELLASTPRLVLL 420 (894)
T ss_pred hHHHHHHHHHHHhCCChHHHHHHHHhC--CCHHHHHHHHHhhhhhhhcccchH----HHHHHHHhCCHHHHhhCchHHHH
Confidence 556666667777778888887765443 122211 11222233334444433 2222233223 34566677
Q ss_pred HHHHHHHcCCHHHHHHHHHHHHHhCCC--C-------HHHHHHHHHHHHHcCChHHHHHHHHHHHhhCCCCCC---hHHH
Q 003563 141 LASFYVEIGDYEKAAESYEQIQKLFPD--N-------VDATKTGAQLFLKCGQTARSIGILEEYLKVHPSDAD---LSVI 208 (810)
Q Consensus 141 la~~~~~~g~~~~A~~~~~~~l~~~p~--~-------~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~---~~~~ 208 (810)
.+.......++.+|..+..++...-|. . .+..-..|.+....|++++|++..+.++..-|.+.. ..++
T Consensus 421 ~aW~~~s~~r~~ea~~li~~l~~~l~~~~~~~~~~l~ae~~aL~a~val~~~~~e~a~~lar~al~~L~~~~~~~r~~~~ 500 (894)
T COG2909 421 QAWLLASQHRLAEAETLIARLEHFLKAPMHSRQGDLLAEFQALRAQVALNRGDPEEAEDLARLALVQLPEAAYRSRIVAL 500 (894)
T ss_pred HHHHHHHccChHHHHHHHHHHHHHhCcCcccchhhHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhcccccchhhhhhh
Confidence 788888899999999999988776554 1 233445678888999999999999999998777643 2456
Q ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHHhcCCCCCc--HHHHHHHHHHHHhcCCH--HHHHHHHHHhhc----cCCch--hH
Q 003563 209 DLLVAILMENNAYEKTLQHIEHAQIVRFSGKELP--LKLKVKAGICYLRLGNM--EKAEILFADLQW----KNAID--HA 278 (810)
Q Consensus 209 ~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~--~~~~~~la~~~~~~g~~--~~A~~~~~~~~~----~~~~~--~~ 278 (810)
..+|.+..-.|++++|..+...+.+.....+... ..+....+.++..+|+. .+....+...-. ..+.. -.
T Consensus 501 sv~~~a~~~~G~~~~Al~~~~~a~~~a~~~~~~~l~~~~~~~~s~il~~qGq~~~a~~~~~~~~~~~q~l~q~~~~~f~~ 580 (894)
T COG2909 501 SVLGEAAHIRGELTQALALMQQAEQMARQHDVYHLALWSLLQQSEILEAQGQVARAEQEKAFNLIREQHLEQKPRHEFLV 580 (894)
T ss_pred hhhhHHHHHhchHHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHhhhcccchhHH
Confidence 7789999999999999999998877633222222 23444557778888843 333333333211 11110 11
Q ss_pred hHHHHHHHHHHHcCCcHHHHHHHHHHHhc---cCC--CCHH-HHHHHHHHHHHccCHHHHHHHHHHHHhhcCCC---HH-
Q 003563 279 DLITEVADTLMSLGHSNSALKYYHFLETN---AGT--DNGY-LYLKLAECYLSLKERAHAIMFFYKALDRFEDN---ID- 348 (810)
Q Consensus 279 ~~~~~la~~~~~~~~~~~A~~~~~~~~~~---~~~--~~~~-~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~---~~- 348 (810)
.....+..++.+ ++.+..-....+.. ..+ .... ..+.++.++...|++++|...+........+. +.
T Consensus 581 ~~r~~ll~~~~r---~~~~~~ear~~~~~~~~~~~~~~~~~~~~~~LA~l~~~~Gdl~~A~~~l~~~~~l~~~~~~~~~~ 657 (894)
T COG2909 581 RIRAQLLRAWLR---LDLAEAEARLGIEVGSVYTPQPLLSRLALSMLAELEFLRGDLDKALAQLDELERLLLNGQYHVDY 657 (894)
T ss_pred HHHHHHHHHHHH---HhhhhHHhhhcchhhhhcccchhHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHhcCCCCCchH
Confidence 122233333333 44444433332222 112 2222 23488999999999999999998887664322 11
Q ss_pred ---HHHHHHHHHHHcCCHHHHHHhcCCCCCCC
Q 003563 349 ---ARLTLASLLLEEAKEEEAITLLSPPKDLD 377 (810)
Q Consensus 349 ---~~~~la~~~~~~g~~~~A~~~~~~a~~~~ 377 (810)
+...........|+..+|.....+....+
T Consensus 658 ~a~~~~v~~~lwl~qg~~~~a~~~l~~s~~~~ 689 (894)
T COG2909 658 LAAAYKVKLILWLAQGDKELAAEWLLKSGDPD 689 (894)
T ss_pred HHHHHHhhHHHhcccCCHHHHHHHHHhccCch
Confidence 11222334456788888888877654433
No 243
>KOG0545 consensus Aryl-hydrocarbon receptor-interacting protein [Posttranslational modification, protein turnover, chaperones]
Probab=97.69 E-value=0.00083 Score=61.99 Aligned_cols=113 Identities=16% Similarity=0.209 Sum_probs=68.4
Q ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--------CCCChHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCCCHHH
Q 003563 32 GVTKMLGEASLQYAYGNFEQAISLLKEVVRL--------SPNLPETYNTLGLAHSALGNHKSAFDFYVIAAHLSPKDSAL 103 (810)
Q Consensus 32 ~~~~~l~~a~~~~~~g~~~~A~~~~~~~l~~--------~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~p~~~~~ 103 (810)
.+..+-++|+.++..|+|.+|...|.+++.. .|..++. ++++......
T Consensus 177 av~~l~q~GN~lfk~~~ykEA~~~YreAi~~l~~L~lkEkP~e~eW------------------------~eLdk~~tpL 232 (329)
T KOG0545|consen 177 AVPVLHQEGNRLFKLGRYKEASSKYREAIICLRNLQLKEKPGEPEW------------------------LELDKMITPL 232 (329)
T ss_pred hhHHHHHhhhhhhhhccHHHHHHHHHHHHHHHHHHHhccCCCChHH------------------------HHHHHhhhHH
Confidence 4556788999999999999999999988642 2332221 1111122334
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC
Q 003563 104 WKQLLTFAVQKGDTAQAMYYIRQAIRAEPKDISLRIHLASFYVEIGDYEKAAESYEQIQKLFPDN 168 (810)
Q Consensus 104 ~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~ 168 (810)
+.+++.|+...|+|-++++.....+...|.+..+++..|.+....-+..+|..-|.++++++|.-
T Consensus 233 llNy~QC~L~~~e~yevleh~seiL~~~~~nvKA~frRakAhaa~Wn~~eA~~D~~~vL~ldpsl 297 (329)
T KOG0545|consen 233 LLNYCQCLLKKEEYYEVLEHCSEILRHHPGNVKAYFRRAKAHAAVWNEAEAKADLQKVLELDPSL 297 (329)
T ss_pred HHhHHHHHhhHHHHHHHHHHHHHHHhcCCchHHHHHHHHHHHHhhcCHHHHHHHHHHHHhcChhh
Confidence 55555555555555555555555555555555555555555555555555666666665555543
No 244
>COG3118 Thioredoxin domain-containing protein [Posttranslational modification, protein turnover, chaperones]
Probab=97.69 E-value=0.0033 Score=60.52 Aligned_cols=152 Identities=13% Similarity=0.036 Sum_probs=109.6
Q ss_pred hHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCH-HHHHHHHHHH
Q 003563 67 PETYNTLGLAHSALGNHKSAFDFYVIAAHLSPKDSALWKQLLTFAVQKGDTAQAMYYIRQAIRAEPKDI-SLRIHLASFY 145 (810)
Q Consensus 67 ~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~-~~~~~la~~~ 145 (810)
.+.-+.-+.-....|++.+|...|..++...|.+.++...++.++...|+.+.|...+...-....+.. .........+
T Consensus 134 ~e~~~~~~~~~~~~e~~~~a~~~~~~al~~~~~~~~~~~~la~~~l~~g~~e~A~~iL~~lP~~~~~~~~~~l~a~i~ll 213 (304)
T COG3118 134 EEEALAEAKELIEAEDFGEAAPLLKQALQAAPENSEAKLLLAECLLAAGDVEAAQAILAALPLQAQDKAAHGLQAQIELL 213 (304)
T ss_pred HHHHHHHhhhhhhccchhhHHHHHHHHHHhCcccchHHHHHHHHHHHcCChHHHHHHHHhCcccchhhHHHHHHHHHHHH
Confidence 344555667778899999999999999999999999999999999999999999888776433222211 1111122333
Q ss_pred HHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHhhCCCCCChHHHHHHHHHHHHcC
Q 003563 146 VEIGDYEKAAESYEQIQKLFPDNVDATKTGAQLFLKCGQTARSIGILEEYLKVHPSDADLSVIDLLVAILMENN 219 (810)
Q Consensus 146 ~~~g~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~~~la~~~~~~g 219 (810)
.+.....+. ..+++.+..+|++.++.+.+|..+...|+.+.|.+.+-..++.+-...+..+...+..++...|
T Consensus 214 ~qaa~~~~~-~~l~~~~aadPdd~~aa~~lA~~~~~~g~~e~Ale~Ll~~l~~d~~~~d~~~Rk~lle~f~~~g 286 (304)
T COG3118 214 EQAAATPEI-QDLQRRLAADPDDVEAALALADQLHLVGRNEAALEHLLALLRRDRGFEDGEARKTLLELFEAFG 286 (304)
T ss_pred HHHhcCCCH-HHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcccccCcHHHHHHHHHHHhcC
Confidence 343333332 2345666789999999999999999999999999999998888765554345555555555555
No 245
>PF07719 TPR_2: Tetratricopeptide repeat; InterPro: IPR013105 The tetratrico peptide repeat (TPR) is a structural motif present in a wide range of proteins [, , ]. It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. This repeat includes outlying Tetratricopeptide-like repeats (TPR) that are not matched by IPR001440 from INTERPRO.; PDB: 1XNF_B 3Q15_A 4ABN_A 1OUV_A 3U4T_A 3MA5_C 2KCV_A 2KCL_A 2XEV_A 3NF1_A ....
Probab=97.67 E-value=4.7e-05 Score=48.34 Aligned_cols=33 Identities=30% Similarity=0.487 Sum_probs=29.9
Q ss_pred chhhhhHHHHHHHhChhhHHHHHHHHHhccccc
Q 003563 722 QEALYNIARACHHVGLVSLAASYYEKVLAIKEK 754 (810)
Q Consensus 722 ~e~~ynlgr~~~~lg~~~~Ai~~Y~~vL~~~~~ 754 (810)
+++++++|.+|..+|.+..|+.+|++++++.|+
T Consensus 1 a~~~~~lg~~~~~~~~~~~A~~~~~~al~l~p~ 33 (34)
T PF07719_consen 1 AEAWYYLGQAYYQLGNYEEAIEYFEKALELDPN 33 (34)
T ss_dssp HHHHHHHHHHHHHTT-HHHHHHHHHHHHHHSTT
T ss_pred CHHHHHHHHHHHHhCCHHHHHHHHHHHHHHCcC
Confidence 378999999999999999999999999999875
No 246
>KOG1550 consensus Extracellular protein SEL-1 and related proteins [Cell wall/membrane/envelope biogenesis; Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=97.65 E-value=0.016 Score=64.38 Aligned_cols=277 Identities=19% Similarity=0.124 Sum_probs=194.3
Q ss_pred hHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHc-----CCHHHHHHHHHHHHHc-----CCCCHHHHHHHHHHHHHcC---
Q 003563 83 HKSAFDFYVIAAHLSPKDSALWKQLLTFAVQK-----GDTAQAMYYIRQAIRA-----EPKDISLRIHLASFYVEIG--- 149 (810)
Q Consensus 83 ~~~A~~~~~~a~~~~p~~~~~~~~la~~~~~~-----g~~~~A~~~~~~al~~-----~p~~~~~~~~la~~~~~~g--- 149 (810)
...|..+++.+... .+..+...+|.++..- .+.+.|+.+++.+.+. .-.++.+.+.+|.+|....
T Consensus 228 ~~~a~~~~~~~a~~--g~~~a~~~~g~~y~~G~~g~~~d~e~a~~~l~~aa~~~~~~a~~~~~~a~~~lg~~Y~~g~~~~ 305 (552)
T KOG1550|consen 228 LSEAFKYYREAAKL--GHSEAQYALGICYLAGTYGVTQDLESAIEYLKLAAESFKKAATKGLPPAQYGLGRLYLQGLGVE 305 (552)
T ss_pred hhHHHHHHHHHHhh--cchHHHHHHHHHHhhccccccccHHHHHHHHHHHHHHHHHHHhhcCCccccHHHHHHhcCCCCc
Confidence 46788888887765 4677888888888754 6899999999999771 1225667889999998853
Q ss_pred --CHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcC---ChHHHHHHHHHHHhhCCCCCChHHHHHHHHHHHHc----CC
Q 003563 150 --DYEKAAESYEQIQKLFPDNVDATKTGAQLFLKCG---QTARSIGILEEYLKVHPSDADLSVIDLLVAILMEN----NA 220 (810)
Q Consensus 150 --~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g---~~~~A~~~~~~~l~~~p~~~~~~~~~~la~~~~~~----g~ 220 (810)
+...|+.+|.++-.. +++.+.+.+|.++.... +...|.++|..+....- . .+...++.+|..- .+
T Consensus 306 ~~d~~~A~~~~~~aA~~--g~~~a~~~lg~~~~~g~~~~d~~~A~~yy~~Aa~~G~--~--~A~~~la~~y~~G~gv~r~ 379 (552)
T KOG1550|consen 306 KIDYEKALKLYTKAAEL--GNPDAQYLLGVLYETGTKERDYRRAFEYYSLAAKAGH--I--LAIYRLALCYELGLGVERN 379 (552)
T ss_pred cccHHHHHHHHHHHHhc--CCchHHHHHHHHHHcCCccccHHHHHHHHHHHHHcCC--h--HHHHHHHHHHHhCCCcCCC
Confidence 778899999999877 46778888898887765 56899999999876542 2 2677888887643 57
Q ss_pred HHHHHHHHHHHHHHhcCCCCCcHHHHHHHHHHHHhc-CCHHHHHHHHHHhhccCCc---hhHhHHHHHHHHHHHc----C
Q 003563 221 YEKTLQHIEHAQIVRFSGKELPLKLKVKAGICYLRL-GNMEKAEILFADLQWKNAI---DHADLITEVADTLMSL----G 292 (810)
Q Consensus 221 ~~~A~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~-g~~~~A~~~~~~~~~~~~~---~~~~~~~~la~~~~~~----~ 292 (810)
...|..++.++.+. . .+.+...++..+... +.++.+...+......... .....+.......... .
T Consensus 380 ~~~A~~~~k~aA~~----g--~~~A~~~~~~~~~~g~~~~~~~~~~~~~~a~~g~~~~q~~a~~l~~~~~~~~~~~~~~~ 453 (552)
T KOG1550|consen 380 LELAFAYYKKAAEK----G--NPSAAYLLGAFYEYGVGRYDTALALYLYLAELGYEVAQSNAAYLLDQSEEDLFSRGVIS 453 (552)
T ss_pred HHHHHHHHHHHHHc----c--ChhhHHHHHHHHHHccccccHHHHHHHHHHHhhhhHHhhHHHHHHHhcccccccccccc
Confidence 89999999999987 2 444444454444332 7777776666554332211 1111111111111111 2
Q ss_pred CcHHHHHHHHHHHhccCCCCHHHHHHHHHHHHHc----cCHHHHHHHHHHHHhhcCCCHHHHHHHHHHHHHc---CCHHH
Q 003563 293 HSNSALKYYHFLETNAGTDNGYLYLKLAECYLSL----KERAHAIMFFYKALDRFEDNIDARLTLASLLLEE---AKEEE 365 (810)
Q Consensus 293 ~~~~A~~~~~~~~~~~~~~~~~~~~~la~~~~~~----g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~---g~~~~ 365 (810)
+...+...+.++. ...+..+...+|.+|..- .+++.|...|.++.... ....+++|.++..- .....
T Consensus 454 ~~~~~~~~~~~a~---~~g~~~a~~~lgd~y~~g~g~~~d~~~a~~~y~~a~~~~---~~~~~nlg~~~e~g~g~~~~~~ 527 (552)
T KOG1550|consen 454 TLERAFSLYSRAA---AQGNADAILKLGDYYYYGLGTGRDPEKAAAQYARASEQG---AQALFNLGYMHEHGEGIKVLHL 527 (552)
T ss_pred chhHHHHHHHHHH---hccCHHHHhhhcceeeecCCCCCChHHHHHHHHHHHHhh---hHHHhhhhhHHhcCcCcchhHH
Confidence 4556666666554 457888899999998764 46999999999998877 88999999998752 12788
Q ss_pred HHHhcCCCCCCCcc
Q 003563 366 AITLLSPPKDLDSL 379 (810)
Q Consensus 366 A~~~~~~a~~~~~~ 379 (810)
|..++.++...+..
T Consensus 528 a~~~~~~~~~~~~~ 541 (552)
T KOG1550|consen 528 AKRYYDQASEEDSR 541 (552)
T ss_pred HHHHHHHHHhcCch
Confidence 88888887776654
No 247
>KOG4507 consensus Uncharacterized conserved protein, contains TPR repeats [Function unknown]
Probab=97.62 E-value=0.0027 Score=66.13 Aligned_cols=97 Identities=14% Similarity=0.044 Sum_probs=85.2
Q ss_pred HHHHHHcCCcHHHHHHHHHHHhccCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHhhcCCCHHHHHHHHHHHHHcCCHH
Q 003563 285 ADTLMSLGHSNSALKYYHFLETNAGTDNGYLYLKLAECYLSLKERAHAIMFFYKALDRFEDNIDARLTLASLLLEEAKEE 364 (810)
Q Consensus 285 a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~ 364 (810)
|..+...|+...|+.++..+....+.........+|.+..+.|-..+|-..+.+++.+....+-..+.+|.++..+.+.+
T Consensus 614 glywr~~gn~~~a~~cl~~a~~~~p~~~~v~~v~la~~~~~~~~~~da~~~l~q~l~~~~sepl~~~~~g~~~l~l~~i~ 693 (886)
T KOG4507|consen 614 GLYWRAVGNSTFAIACLQRALNLAPLQQDVPLVNLANLLIHYGLHLDATKLLLQALAINSSEPLTFLSLGNAYLALKNIS 693 (886)
T ss_pred cceeeecCCcHHHHHHHHHHhccChhhhcccHHHHHHHHHHhhhhccHHHHHHHHHhhcccCchHHHhcchhHHHHhhhH
Confidence 44445679999999999999866444455567899999999999999999999999999888899999999999999999
Q ss_pred HHHHhcCCCCCCCcccC
Q 003563 365 EAITLLSPPKDLDSLDM 381 (810)
Q Consensus 365 ~A~~~~~~a~~~~~~~~ 381 (810)
.|++.++++++.+|.+.
T Consensus 694 ~a~~~~~~a~~~~~~~~ 710 (886)
T KOG4507|consen 694 GALEAFRQALKLTTKCP 710 (886)
T ss_pred HHHHHHHHHHhcCCCCh
Confidence 99999999999999875
No 248
>PF13431 TPR_17: Tetratricopeptide repeat
Probab=97.61 E-value=6.6e-05 Score=47.20 Aligned_cols=32 Identities=31% Similarity=0.453 Sum_probs=18.3
Q ss_pred HHHHHHhCCCChHHHHHHHHHHHHcCChHHHH
Q 003563 56 LKEVVRLSPNLPETYNTLGLAHSALGNHKSAF 87 (810)
Q Consensus 56 ~~~~l~~~p~~~~~~~~l~~~~~~~g~~~~A~ 87 (810)
|+++|+.+|+++.+|+.+|.+|...|++++|+
T Consensus 2 y~kAie~~P~n~~a~~nla~~~~~~g~~~~A~ 33 (34)
T PF13431_consen 2 YKKAIELNPNNAEAYNNLANLYLNQGDYEEAI 33 (34)
T ss_pred hHHHHHHCCCCHHHHHHHHHHHHHCcCHHhhc
Confidence 45555555555555555555555555555553
No 249
>PF02259 FAT: FAT domain; InterPro: IPR003151 The FAT domain is a domain present in the PIK-related kinases. Members of the family of PIK-related kinases may act as intracellular sensors that govern radial and horizontal pathways [].; GO: 0005515 protein binding
Probab=97.59 E-value=0.045 Score=57.70 Aligned_cols=292 Identities=17% Similarity=0.103 Sum_probs=154.8
Q ss_pred HHHHHHcCCHHHHHHHHHHHHHhCC-CChHHHHHHHHHHHHcCChHHHHHHHHHHHhcC--------CCCHHHHHHHHHH
Q 003563 40 ASLQYAYGNFEQAISLLKEVVRLSP-NLPETYNTLGLAHSALGNHKSAFDFYVIAAHLS--------PKDSALWKQLLTF 110 (810)
Q Consensus 40 a~~~~~~g~~~~A~~~~~~~l~~~p-~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~--------p~~~~~~~~la~~ 110 (810)
+.++...|+++. +.+.+...+ +.++..+..+......|+++++....+++...- +......+..-..
T Consensus 5 ~eaaWrl~~Wd~----l~~~~~~~~~~~~~~~~~~al~~l~~~~~~~~~~~i~~~r~~~~~~l~~~~~~s~~~~y~~l~~ 80 (352)
T PF02259_consen 5 AEAAWRLGDWDL----LEEYLSQSNEDSPEYSFYRALLALRQGDYDEAKKYIEKARQLLLDELSALSSESYQRAYPSLVK 80 (352)
T ss_pred HHHHHhcCChhh----HHHHHhhccCCChhHHHHHHHHHHhCccHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHH
Confidence 456778888888 333333333 234666667777778899998888888776532 1111111111112
Q ss_pred HHHcCCHHHHHHHHHHHHHcCCCCH----HHHHHHHHHHHHcCCHH--HHHHHHHHHHHh----CCCCHHHHHHHHHHHH
Q 003563 111 AVQKGDTAQAMYYIRQAIRAEPKDI----SLRIHLASFYVEIGDYE--KAAESYEQIQKL----FPDNVDATKTGAQLFL 180 (810)
Q Consensus 111 ~~~~g~~~~A~~~~~~al~~~p~~~----~~~~~la~~~~~~g~~~--~A~~~~~~~l~~----~p~~~~~~~~la~~~~ 180 (810)
+....+.+++..+....... +... ..|...-.. ...+++ +-+-.++..+-. .......+...+.+..
T Consensus 81 lq~L~Elee~~~~~~~~~~~-~~~~~~l~~~W~~Rl~~--~~~~~~~~~~il~~R~~~l~~~~~~~~~~~~~l~~a~~aR 157 (352)
T PF02259_consen 81 LQQLVELEEIIELKSNLSQN-PQDLKSLLKRWRSRLPN--MQDDFSVWEPILSLRRLVLSLILLPEELAETWLKFAKLAR 157 (352)
T ss_pred HhHHHHHHHHHHHHHhhccc-HHHHHHHHHHHHHHHHH--hccchHHHHHHHHHHHHHHhcccchhHHHHHHHHHHHHHH
Confidence 22223334444333211100 0000 011111000 011111 111111111111 3345677889999999
Q ss_pred HcCChHHHHHHHHHHHhhCCCCC--ChHHHHHHHHHHHHcCCHHHHHHHHHHHHHH-hcCCCCCcHHHHHHHHHHHHhcC
Q 003563 181 KCGQTARSIGILEEYLKVHPSDA--DLSVIDLLVAILMENNAYEKTLQHIEHAQIV-RFSGKELPLKLKVKAGICYLRLG 257 (810)
Q Consensus 181 ~~g~~~~A~~~~~~~l~~~p~~~--~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~-~~~~~~~~~~~~~~la~~~~~~g 257 (810)
+.|+++.|...+.++....+... .+.+....+.++...|+..+|+..++..+.. ...............+...
T Consensus 158 k~g~~~~A~~~l~~~~~~~~~~~~~~~~v~~e~akllw~~g~~~~Ai~~L~~~~~~~~~~~~~~~~~~~~~~~~~~---- 233 (352)
T PF02259_consen 158 KAGNFQLALSALNRLFQLNPSSESLLPRVFLEYAKLLWAQGEQEEAIQKLRELLKCRLSKNIDSISNAELKSGLLE---- 233 (352)
T ss_pred HCCCcHHHHHHHHHHhccCCcccCCCcchHHHHHHHHHHcCCHHHHHHHHHHHHHHHhhhccccccHHHHhhcccc----
Confidence 99999999999999887653321 2336677899999999999999999888872 1111010001111111000
Q ss_pred CHHHHHHHHHHhhccCCchhHhHHHHHHHHHHHc------CCcHHHHHHHHHHHhccCCCCHHHHHHHHHHHHHccC---
Q 003563 258 NMEKAEILFADLQWKNAIDHADLITEVADTLMSL------GHSNSALKYYHFLETNAGTDNGYLYLKLAECYLSLKE--- 328 (810)
Q Consensus 258 ~~~~A~~~~~~~~~~~~~~~~~~~~~la~~~~~~------~~~~~A~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~--- 328 (810)
..+.... .............++..+|...... +..++++..|..+... .|....+|+.+|..+...=+
T Consensus 234 ~~~~~~~--~~~~~~~~~~~a~~~l~~a~w~~~~~~~~~~~~~~~~~~~~~~a~~~-~~~~~k~~~~~a~~~~~~~~~~~ 310 (352)
T PF02259_consen 234 SLEVISS--TNLDKESKELKAKAFLLLAKWLDELYSKLSSESSDEILKYYKEATKL-DPSWEKAWHSWALFNDKLLESDP 310 (352)
T ss_pred ccccccc--cchhhhhHHHHHHHHHHHHHHHHhhccccccccHHHHHHHHHHHHHh-ChhHHHHHHHHHHHHHHHHHhhh
Confidence 0000000 0000111123456677777777777 7888899999988876 77777888888877654321
Q ss_pred --------------HHHHHHHHHHHHhhcCC
Q 003563 329 --------------RAHAIMFFYKALDRFED 345 (810)
Q Consensus 329 --------------~~~A~~~~~~al~~~p~ 345 (810)
...|+..|-+++...+.
T Consensus 311 ~~~~~~~~~~~~~~~~~ai~~y~~al~~~~~ 341 (352)
T PF02259_consen 311 REKEESSQEDRSEYLEQAIEGYLKALSLGSK 341 (352)
T ss_pred hcccccchhHHHHHHHHHHHHHHHHHhhCCC
Confidence 13466666677766665
No 250
>PF13181 TPR_8: Tetratricopeptide repeat; PDB: 3GW4_B 3MA5_C 2KCV_A 2KCL_A 3FP3_A 3LCA_A 3FP4_A 3FP2_A 1W3B_B 1ELW_A ....
Probab=97.59 E-value=7.1e-05 Score=47.48 Aligned_cols=32 Identities=31% Similarity=0.557 Sum_probs=30.2
Q ss_pred hhhhhHHHHHHHhChhhHHHHHHHHHhccccc
Q 003563 723 EALYNIARACHHVGLVSLAASYYEKVLAIKEK 754 (810)
Q Consensus 723 e~~ynlgr~~~~lg~~~~Ai~~Y~~vL~~~~~ 754 (810)
++++++|.+|.++|.++.|+++|++++++.|+
T Consensus 2 ~~~~~lg~~y~~~~~~~~A~~~~~~a~~~~~~ 33 (34)
T PF13181_consen 2 EAYYNLGKIYEQLGDYEEALEYFEKALELNPD 33 (34)
T ss_dssp HHHHHHHHHHHHTTSHHHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCC
Confidence 68999999999999999999999999999874
No 251
>PF10345 Cohesin_load: Cohesin loading factor; InterPro: IPR019440 Cohesin loading factor is a conserved protein that has been characterised in fungi. It is associated with the cohesin complex and is required in G1 for cohesin binding to chromosomes, but is dispensable in G2 when cohesion has been established. It is often referred to as Ssl3 in Schizosaccharomyces pombe (Fission yeast), and Scc4 in Saccharomyces cerevisiae (Baker's yeast). It complexes with Mis4 [].
Probab=97.58 E-value=0.23 Score=56.30 Aligned_cols=313 Identities=18% Similarity=0.139 Sum_probs=197.2
Q ss_pred HHHHHHHHHHHHHhCCC----ChHHHHHHHHHHH-HcCChHHHHHHHHHHHhcCCC--CHH----HHHHHHHHHHHcCCH
Q 003563 49 FEQAISLLKEVVRLSPN----LPETYNTLGLAHS-ALGNHKSAFDFYVIAAHLSPK--DSA----LWKQLLTFAVQKGDT 117 (810)
Q Consensus 49 ~~~A~~~~~~~l~~~p~----~~~~~~~l~~~~~-~~g~~~~A~~~~~~a~~~~p~--~~~----~~~~la~~~~~~g~~ 117 (810)
...|+.+++-+++..+- .+.+++.+|.++. ...+++.|..++.+++.+... ..+ ....++.++.+.+..
T Consensus 37 I~~ai~CL~~~~~~~~l~p~~ea~~~l~la~iL~~eT~n~~~Ae~~L~k~~~l~~~~~~~d~k~~~~~ll~~i~~~~~~~ 116 (608)
T PF10345_consen 37 IATAIKCLEAVLKQFKLSPRQEARVRLRLASILLEETENLDLAETYLEKAILLCERHRLTDLKFRCQFLLARIYFKTNPK 116 (608)
T ss_pred HHHHHHHHHHHhccCCCCHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhccccchHHHHHHHHHHHHHHHHhcCHH
Confidence 35678888888753222 3457888999988 789999999999999877643 222 344668888888877
Q ss_pred HHHHHHHHHHHHcCCC---C-HHHHHHH--HHHHHHcCCHHHHHHHHHHHHHhC--CCCHHH----HHHHHHHHHHcCCh
Q 003563 118 AQAMYYIRQAIRAEPK---D-ISLRIHL--ASFYVEIGDYEKAAESYEQIQKLF--PDNVDA----TKTGAQLFLKCGQT 185 (810)
Q Consensus 118 ~~A~~~~~~al~~~p~---~-~~~~~~l--a~~~~~~g~~~~A~~~~~~~l~~~--p~~~~~----~~~la~~~~~~g~~ 185 (810)
. |...+++.++.... . ....+.+ ...+...+++..|++.++.+.... +.++.+ ....+.+....+..
T Consensus 117 ~-a~~~l~~~I~~~~~~~~~~w~~~frll~~~l~~~~~d~~~Al~~L~~~~~~a~~~~d~~~~v~~~l~~~~l~l~~~~~ 195 (608)
T PF10345_consen 117 A-ALKNLDKAIEDSETYGHSAWYYAFRLLKIQLALQHKDYNAALENLQSIAQLANQRGDPAVFVLASLSEALLHLRRGSP 195 (608)
T ss_pred H-HHHHHHHHHHHHhccCchhHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHhhhcCCHHHHHHHHHHHHHHHhcCCCc
Confidence 7 99999999886543 2 2222222 333334489999999999998875 345433 23345666777888
Q ss_pred HHHHHHHHHHHhh------CCCC--CChHHHHHHHH--HHHHcCCHHHHHHHHHHHHHHhc---CCC-------------
Q 003563 186 ARSIGILEEYLKV------HPSD--ADLSVIDLLVA--ILMENNAYEKTLQHIEHAQIVRF---SGK------------- 239 (810)
Q Consensus 186 ~~A~~~~~~~l~~------~p~~--~~~~~~~~la~--~~~~~g~~~~A~~~~~~~~~~~~---~~~------------- 239 (810)
+++++.++++... +|.. +...++..+.. +....|+++.+...+++.-.... ...
T Consensus 196 ~d~~~~l~~~~~~~~~~q~~~~~~~~qL~~~~lll~l~~~l~~~~~~~~~~~L~~lq~~~~~~~~~~~w~~~~~d~~i~l 275 (608)
T PF10345_consen 196 DDVLELLQRAIAQARSLQLDPSVHIPQLKALFLLLDLCCSLQQGDVKNSKQKLKQLQQFLDEIKKSPSWPSWDEDGSIPL 275 (608)
T ss_pred hhHHHHHHHHHHHHhhcccCCCCCcHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhhcCccCCCcCCCeeEEe
Confidence 8888888877432 2222 11234444443 44567887777776665443211 100
Q ss_pred ------------CCc----------HHHHHHHHHHHHhcCCHHHHHHHHHHhhccC-------C---ch-----------
Q 003563 240 ------------ELP----------LKLKVKAGICYLRLGNMEKAEILFADLQWKN-------A---ID----------- 276 (810)
Q Consensus 240 ------------~~~----------~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~-------~---~~----------- 276 (810)
+.. .-+++.-|......+..++|.+++++++..- + ..
T Consensus 276 ~~~~~~~~~~~~~~~f~wl~~~~l~~L~y~lS~l~~~~~~~~~ks~k~~~k~l~~i~~~~~~~~~~~~~sl~~~~~~~~~ 355 (608)
T PF10345_consen 276 NIGEGSSNSGGTPLVFSWLPKEELYALVYFLSGLHNLYKGSMDKSEKFLEKALKQIEKLKIKSPSAPSESLSEASERIQW 355 (608)
T ss_pred ecccccccCCCceeEEeecCHHHHHHHHHHHHHHHHhhccCchHHHHHHHHHHHHHHHhhccCCCCCCcCHHHHHHhHHH
Confidence 000 0123334555666777767777777654311 0 00
Q ss_pred ----hHhHHHHHHHHHHHcCCcHHHHHHHHHHHhccC--C------CCHHHHHHHHHHHHHccCHHHHHHHHH-------
Q 003563 277 ----HADLITEVADTLMSLGHSNSALKYYHFLETNAG--T------DNGYLYLKLAECYLSLKERAHAIMFFY------- 337 (810)
Q Consensus 277 ----~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~--~------~~~~~~~~la~~~~~~g~~~~A~~~~~------- 337 (810)
.....+..+....-.+++..|....+.+..... | ..+..++..|..+...|+.+.|...|.
T Consensus 356 ~~~l~~~~~~y~~~~~~~~~~~~~a~~~l~~~~~~~~~~~~~~~~~~~~~~~yL~gl~~q~~g~l~~A~~~y~~~~~~~~ 435 (608)
T PF10345_consen 356 LRYLQCYLLFYQIWCNFIRGDWSKATQELEFMRQLCQRSPSKLYESLYPLLHYLLGLYYQSTGDLEAALYQYQKPRFLLC 435 (608)
T ss_pred HHHHHHHHHHHHHHHHHHCcCHHHHHHHHHHHHHHHhcCccchhhhhhHHHHHHHHHHHHHcCCHHHHHHHHhhhHHhhh
Confidence 111344557777889999999999887765411 1 247788999999999999999999998
Q ss_pred -HHHhhcCCC---HHHHHHHHHHHHHcCC
Q 003563 338 -KALDRFEDN---IDARLTLASLLLEEAK 362 (810)
Q Consensus 338 -~al~~~p~~---~~~~~~la~~~~~~g~ 362 (810)
.+....+.+ .-+..++..++...+.
T Consensus 436 ~~~~~~~~~~El~ila~LNl~~I~~~~~~ 464 (608)
T PF10345_consen 436 EAANRKSKFRELYILAALNLAIILQYESS 464 (608)
T ss_pred hhhccCCcchHHHHHHHHHHHHHhHhhcc
Confidence 333333333 2233556677776665
No 252
>PF13281 DUF4071: Domain of unknown function (DUF4071)
Probab=97.55 E-value=0.033 Score=56.99 Aligned_cols=168 Identities=12% Similarity=-0.033 Sum_probs=75.3
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHc----CCCCHHHHHHHHHHHHH---cCCHHHHHHHHHH-HHHhCCCCHHHHHHH
Q 003563 104 WKQLLTFAVQKGDTAQAMYYIRQAIRA----EPKDISLRIHLASFYVE---IGDYEKAAESYEQ-IQKLFPDNVDATKTG 175 (810)
Q Consensus 104 ~~~la~~~~~~g~~~~A~~~~~~al~~----~p~~~~~~~~la~~~~~---~g~~~~A~~~~~~-~l~~~p~~~~~~~~l 175 (810)
...+-.+|....+|+.-+...+..-.. -++.+...+..|.++.+ .|+.++|+..+.. +....+.+++.+..+
T Consensus 144 v~~lllSyRdiqdydamI~Lve~l~~~p~~~~~~~~~i~~~yafALnRrn~~gdre~Al~il~~~l~~~~~~~~d~~gL~ 223 (374)
T PF13281_consen 144 VINLLLSYRDIQDYDAMIKLVETLEALPTCDVANQHNIKFQYAFALNRRNKPGDREKALQILLPVLESDENPDPDTLGLL 223 (374)
T ss_pred HHHHHHHhhhhhhHHHHHHHHHHhhccCccchhcchHHHHHHHHHHhhcccCCCHHHHHHHHHHHHhccCCCChHHHHHH
Confidence 334444444445555444444444333 22333444444444444 5555555555554 222333344444444
Q ss_pred HHHHHH---------cCChHHHHHHHHHHHhhCCCCCChHHHHHHHHHHHHcCCHHHHHHHHHHHH----HHhc----CC
Q 003563 176 AQLFLK---------CGQTARSIGILEEYLKVHPSDADLSVIDLLVAILMENNAYEKTLQHIEHAQ----IVRF----SG 238 (810)
Q Consensus 176 a~~~~~---------~g~~~~A~~~~~~~l~~~p~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~----~~~~----~~ 238 (810)
|.+|-. ....++|+..|.++++.+|+... -.+++.++...|...+....+++.. ...+ .+
T Consensus 224 GRIyKD~~~~s~~~d~~~ldkAi~~Y~kgFe~~~~~Y~---GIN~AtLL~~~g~~~~~~~el~~i~~~l~~llg~kg~~~ 300 (374)
T PF13281_consen 224 GRIYKDLFLESNFTDRESLDKAIEWYRKGFEIEPDYYS---GINAATLLMLAGHDFETSEELRKIGVKLSSLLGRKGSLE 300 (374)
T ss_pred HHHHHHHHHHcCccchHHHHHHHHHHHHHHcCCccccc---hHHHHHHHHHcCCcccchHHHHHHHHHHHHHHHhhcccc
Confidence 444421 11245566666666666544322 2244444444443222222222211 1111 11
Q ss_pred CCCcHHHHHHHHHHHHhcCCHHHHHHHHHHhhccCC
Q 003563 239 KELPLKLKVKAGICYLRLGNMEKAEILFADLQWKNA 274 (810)
Q Consensus 239 ~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~ 274 (810)
..........++.+..-.|++++|...++++....|
T Consensus 301 ~~~dYWd~ATl~Ea~vL~~d~~ka~~a~e~~~~l~~ 336 (374)
T PF13281_consen 301 KMQDYWDVATLLEASVLAGDYEKAIQAAEKAFKLKP 336 (374)
T ss_pred ccccHHHHHHHHHHHHHcCCHHHHHHHHHHHhhcCC
Confidence 222334444555556666666666666666655544
No 253
>KOG0376 consensus Serine-threonine phosphatase 2A, catalytic subunit [General function prediction only]
Probab=97.47 E-value=0.0002 Score=73.12 Aligned_cols=106 Identities=20% Similarity=0.228 Sum_probs=75.5
Q ss_pred HHHHHHHcCChHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHcCCHH
Q 003563 73 LGLAHSALGNHKSAFDFYVIAAHLSPKDSALWKQLLTFAVQKGDTAQAMYYIRQAIRAEPKDISLRIHLASFYVEIGDYE 152 (810)
Q Consensus 73 l~~~~~~~g~~~~A~~~~~~a~~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~ 152 (810)
-+...+.-++++.|+..|.+|++++|+.+..+...+..+...+++..|+.-+.++++.+|....+++..|.+....+.+.
T Consensus 10 ean~~l~~~~fd~avdlysKaI~ldpnca~~~anRa~a~lK~e~~~~Al~Da~kaie~dP~~~K~Y~rrg~a~m~l~~~~ 89 (476)
T KOG0376|consen 10 EANEALKDKVFDVAVDLYSKAIELDPNCAIYFANRALAHLKVESFGGALHDALKAIELDPTYIKAYVRRGTAVMALGEFK 89 (476)
T ss_pred HHhhhcccchHHHHHHHHHHHHhcCCcceeeechhhhhheeechhhhHHHHHHhhhhcCchhhheeeeccHHHHhHHHHH
Confidence 34555566677777777777777777777777777777777777777777777777777777777777777777777777
Q ss_pred HHHHHHHHHHHhCCCCHHHHHHHHHH
Q 003563 153 KAAESYEQIQKLFPDNVDATKTGAQL 178 (810)
Q Consensus 153 ~A~~~~~~~l~~~p~~~~~~~~la~~ 178 (810)
+|+..|++...+.|+++.+...+..+
T Consensus 90 ~A~~~l~~~~~l~Pnd~~~~r~~~Ec 115 (476)
T KOG0376|consen 90 KALLDLEKVKKLAPNDPDATRKIDEC 115 (476)
T ss_pred HHHHHHHHhhhcCcCcHHHHHHHHHH
Confidence 77777777777777777666555444
No 254
>PF13281 DUF4071: Domain of unknown function (DUF4071)
Probab=97.46 E-value=0.0037 Score=63.73 Aligned_cols=176 Identities=15% Similarity=0.120 Sum_probs=104.7
Q ss_pred cHHHHHHHHHHHHhcCCHHHHHHHHHHhhccC---CchhHhHHHHHHHHHHH---cCCcHHHHHHHHHHHhccCCCCHHH
Q 003563 242 PLKLKVKAGICYLRLGNMEKAEILFADLQWKN---AIDHADLITEVADTLMS---LGHSNSALKYYHFLETNAGTDNGYL 315 (810)
Q Consensus 242 ~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~---~~~~~~~~~~la~~~~~---~~~~~~A~~~~~~~~~~~~~~~~~~ 315 (810)
..++...+-.+|....+|+.-+.+.+.+-... ....+.+.+..|.++.+ .|+.++|+..+..++....+.++++
T Consensus 140 s~div~~lllSyRdiqdydamI~Lve~l~~~p~~~~~~~~~i~~~yafALnRrn~~gdre~Al~il~~~l~~~~~~~~d~ 219 (374)
T PF13281_consen 140 SPDIVINLLLSYRDIQDYDAMIKLVETLEALPTCDVANQHNIKFQYAFALNRRNKPGDREKALQILLPVLESDENPDPDT 219 (374)
T ss_pred ChhHHHHHHHHhhhhhhHHHHHHHHHHhhccCccchhcchHHHHHHHHHHhhcccCCCHHHHHHHHHHHHhccCCCChHH
Confidence 34445555555666666666666666543220 11244455566666666 6777777777766554445666777
Q ss_pred HHHHHHHHHHc---------cCHHHHHHHHHHHHhhcCCCHHHHHHHHHHHHHcCCHHHHHHhcCCCC-CCC---cccCC
Q 003563 316 YLKLAECYLSL---------KERAHAIMFFYKALDRFEDNIDARLTLASLLLEEAKEEEAITLLSPPK-DLD---SLDMN 382 (810)
Q Consensus 316 ~~~la~~~~~~---------g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~a~-~~~---~~~~~ 382 (810)
+..+|.+|... ...++|+..|.++.+.+|+. -.-.+++.++...|...+...-+.+.. .+. .....
T Consensus 220 ~gL~GRIyKD~~~~s~~~d~~~ldkAi~~Y~kgFe~~~~~-Y~GIN~AtLL~~~g~~~~~~~el~~i~~~l~~llg~kg~ 298 (374)
T PF13281_consen 220 LGLLGRIYKDLFLESNFTDRESLDKAIEWYRKGFEIEPDY-YSGINAATLLMLAGHDFETSEELRKIGVKLSSLLGRKGS 298 (374)
T ss_pred HHHHHHHHHHHHHHcCccchHHHHHHHHHHHHHHcCCccc-cchHHHHHHHHHcCCcccchHHHHHHHHHHHHHHHhhcc
Confidence 77777766432 23788999999999998643 444566667776665333221111111 000 00111
Q ss_pred CCCCChhhhHHHHHHHHHHHHHhcCCchhHHhhhhhhhhh
Q 003563 383 SDKSNPWWLNEKIIMKLCHIYRAKGMPEDFVDAIFPLVCE 422 (810)
Q Consensus 383 ~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~ 422 (810)
.+....+| ..-.++.+..-.|++++|++.++++++.
T Consensus 299 ~~~~~dYW----d~ATl~Ea~vL~~d~~ka~~a~e~~~~l 334 (374)
T PF13281_consen 299 LEKMQDYW----DVATLLEASVLAGDYEKAIQAAEKAFKL 334 (374)
T ss_pred ccccccHH----HHHHHHHHHHHcCCHHHHHHHHHHHhhc
Confidence 12345678 5566777777889999999999998865
No 255
>COG5107 RNA14 Pre-mRNA 3'-end processing (cleavage and polyadenylation) factor [RNA processing and modification]
Probab=97.44 E-value=0.18 Score=51.47 Aligned_cols=372 Identities=13% Similarity=0.088 Sum_probs=203.2
Q ss_pred CCCCHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCCCHHHHHH
Q 003563 27 NKLSPGVTKMLGEASLQYAYGNFEQAISLLKEVVRLSPNLPETYNTLGLAHSALGNHKSAFDFYVIAAHLSPKDSALWKQ 106 (810)
Q Consensus 27 ~~~~~~~~~~l~~a~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~p~~~~~~~~ 106 (810)
+..|.++..++.....+-.+|.+++-.+.+++...-.|-.+.+|...-.--...+++......|.+++...- +.+.|..
T Consensus 36 kdNPtnI~S~fqLiq~~~tq~s~~~~re~yeq~~~pfp~~~~aw~ly~s~ELA~~df~svE~lf~rCL~k~l-~ldLW~l 114 (660)
T COG5107 36 KDNPTNILSYFQLIQYLETQESMDAEREMYEQLSSPFPIMEHAWRLYMSGELARKDFRSVESLFGRCLKKSL-NLDLWML 114 (660)
T ss_pred hcCchhHHHHHHHHHHHhhhhhHHHHHHHHHHhcCCCccccHHHHHHhcchhhhhhHHHHHHHHHHHHhhhc-cHhHHHH
Confidence 455677888888888888888888888888888888887777776665555566778777777777776432 3555654
Q ss_pred HHHHHHHcCC---------HHHHHHHHHHHHHcCCCCHHHHHHHHHHHH---------HcCCHHHHHHHHHHHHHhCCCC
Q 003563 107 LLTFAVQKGD---------TAQAMYYIRQAIRAEPKDISLRIHLASFYV---------EIGDYEKAAESYEQIQKLFPDN 168 (810)
Q Consensus 107 la~~~~~~g~---------~~~A~~~~~~al~~~p~~~~~~~~la~~~~---------~~g~~~~A~~~~~~~l~~~p~~ 168 (810)
.-..-.+.+. .-+|.+..-...-.+|.....|...+..+. ++.+.+.-...|.+++..--++
T Consensus 115 Yl~YIRr~n~~~tGq~r~~i~~ayefv~~~~~~e~~s~~~W~ey~~fle~~~~~~kwEeQqrid~iR~~Y~ral~tP~~n 194 (660)
T COG5107 115 YLEYIRRVNNLITGQKRFKIYEAYEFVLGCAIFEPQSENYWDEYGLFLEYIEELGKWEEQQRIDKIRNGYMRALQTPMGN 194 (660)
T ss_pred HHHHHHhhCcccccchhhhhHHHHHHHHhcccccccccchHHHHHHHHHhccccccHHHHHHHHHHHHHHHHHHcCcccc
Confidence 4433333321 122333322333356777777777666553 2334556667788887653333
Q ss_pred HH-HHHHHHH---------HHHHcC----ChHHHHHHHHHHHhh-------CCCC------------CC-----------
Q 003563 169 VD-ATKTGAQ---------LFLKCG----QTARSIGILEEYLKV-------HPSD------------AD----------- 204 (810)
Q Consensus 169 ~~-~~~~la~---------~~~~~g----~~~~A~~~~~~~l~~-------~p~~------------~~----------- 204 (810)
.+ .|...-. .---.| -|-.|...+++...+ +|.+ ..
T Consensus 195 leklW~dy~~fE~e~N~~TarKfvge~sp~ym~ar~~yqe~~nlt~Gl~v~~~~~~Rt~nK~~r~s~S~WlNwIkwE~en 274 (660)
T COG5107 195 LEKLWKDYENFELELNKITARKFVGETSPIYMSARQRYQEIQNLTRGLSVKNPINLRTANKAARTSDSNWLNWIKWEMEN 274 (660)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhcccCHHHHHHHHHHHHHHHHhccccccCchhhhhhccccccccchhhhHhhHhhcC
Confidence 21 1111110 000011 123344444443322 1100 00
Q ss_pred ---------------------------hHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhcCCCCCcHHHHHHHHHHHHhcC
Q 003563 205 ---------------------------LSVIDLLVAILMENNAYEKTLQHIEHAQIVRFSGKELPLKLKVKAGICYLRLG 257 (810)
Q Consensus 205 ---------------------------~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g 257 (810)
..+|+.........++-+.|+....++.. ..+.+.+.++.++....
T Consensus 275 ~l~L~~~~~~qRi~y~~~q~~~y~~~~~evw~dys~Y~~~isd~q~al~tv~rg~~-------~spsL~~~lse~yel~n 347 (660)
T COG5107 275 GLKLGGRPHEQRIHYIHNQILDYFYYAEEVWFDYSEYLIGISDKQKALKTVERGIE-------MSPSLTMFLSEYYELVN 347 (660)
T ss_pred CcccCCCcHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHhhccHHHHHHHHHHhccc-------CCCchheeHHHHHhhcc
Confidence 01222333333344455555555544433 23335566777776666
Q ss_pred CHHHHHHHHHHhhcc------------------CCchhHh-----------HHHHHHHHHHHcCCcHHHHHHHHHHHhcc
Q 003563 258 NMEKAEILFADLQWK------------------NAIDHAD-----------LITEVADTLMSLGHSNSALKYYHFLETNA 308 (810)
Q Consensus 258 ~~~~A~~~~~~~~~~------------------~~~~~~~-----------~~~~la~~~~~~~~~~~A~~~~~~~~~~~ 308 (810)
+-+....+|+++... ++...++ ++...-....+..-.+.|..+|.++.+..
T Consensus 348 d~e~v~~~fdk~~q~L~r~ys~~~s~~~s~~D~N~e~~~Ell~kr~~k~t~v~C~~~N~v~r~~Gl~aaR~~F~k~rk~~ 427 (660)
T COG5107 348 DEEAVYGCFDKCTQDLKRKYSMGESESASKVDNNFEYSKELLLKRINKLTFVFCVHLNYVLRKRGLEAARKLFIKLRKEG 427 (660)
T ss_pred cHHHHhhhHHHHHHHHHHHHhhhhhhhhccccCCccccHHHHHHHHhhhhhHHHHHHHHHHHHhhHHHHHHHHHHHhccC
Confidence 666555555553210 0100111 12222223334445677777777776542
Q ss_pred CCCCHHHHHHHHHH-HHHccCHHHHHHHHHHHHhhcCCCHHHHHHHHHHHHHcCCHHHHHHhcCCCCCCCcccCCCCCCC
Q 003563 309 GTDNGYLYLKLAEC-YLSLKERAHAIMFFYKALDRFEDNIDARLTLASLLLEEAKEEEAITLLSPPKDLDSLDMNSDKSN 387 (810)
Q Consensus 309 ~~~~~~~~~~la~~-~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~ 387 (810)
-..+.++..-|.+ +...|++..|-..|+-.+...|+++-.....-..+...|+-+.|..+|+.++..-.... .
T Consensus 428 -~~~h~vyi~~A~~E~~~~~d~~ta~~ifelGl~~f~d~~~y~~kyl~fLi~inde~naraLFetsv~r~~~~q----~- 501 (660)
T COG5107 428 -IVGHHVYIYCAFIEYYATGDRATAYNIFELGLLKFPDSTLYKEKYLLFLIRINDEENARALFETSVERLEKTQ----L- 501 (660)
T ss_pred -CCCcceeeeHHHHHHHhcCCcchHHHHHHHHHHhCCCchHHHHHHHHHHHHhCcHHHHHHHHHHhHHHHHHhh----h-
Confidence 2333333333322 45678899999999999999999887777777788888999999999987654332210 0
Q ss_pred hhhhHHHHHHHHHHHHHhcCCchhHHhhhh
Q 003563 388 PWWLNEKIIMKLCHIYRAKGMPEDFVDAIF 417 (810)
Q Consensus 388 ~~~~~~~~~~~la~~~~~~g~~~~A~~~~~ 417 (810)
.+++-.+...-..-|+...+...-+
T Consensus 502 -----k~iy~kmi~YEs~~G~lN~v~sLe~ 526 (660)
T COG5107 502 -----KRIYDKMIEYESMVGSLNNVYSLEE 526 (660)
T ss_pred -----hHHHHHHHHHHHhhcchHHHHhHHH
Confidence 1344444444445566655554333
No 256
>KOG0545 consensus Aryl-hydrocarbon receptor-interacting protein [Posttranslational modification, protein turnover, chaperones]
Probab=97.42 E-value=0.003 Score=58.43 Aligned_cols=103 Identities=21% Similarity=0.211 Sum_probs=88.5
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHH--------cCCCCH----------HHHHHHHHHHHHcCCHHHHHHHHHHHHH
Q 003563 102 ALWKQLLTFAVQKGDTAQAMYYIRQAIR--------AEPKDI----------SLRIHLASFYVEIGDYEKAAESYEQIQK 163 (810)
Q Consensus 102 ~~~~~la~~~~~~g~~~~A~~~~~~al~--------~~p~~~----------~~~~~la~~~~~~g~~~~A~~~~~~~l~ 163 (810)
.++..-|+-++..|+|.+|...|..|+. ..|..+ ..+.+.++|+...|+|-++++....++.
T Consensus 179 ~~l~q~GN~lfk~~~ykEA~~~YreAi~~l~~L~lkEkP~e~eW~eLdk~~tpLllNy~QC~L~~~e~yevleh~seiL~ 258 (329)
T KOG0545|consen 179 PVLHQEGNRLFKLGRYKEASSKYREAIICLRNLQLKEKPGEPEWLELDKMITPLLLNYCQCLLKKEEYYEVLEHCSEILR 258 (329)
T ss_pred HHHHHhhhhhhhhccHHHHHHHHHHHHHHHHHHHhccCCCChHHHHHHHhhhHHHHhHHHHHhhHHHHHHHHHHHHHHHh
Confidence 4566778889999999999999998875 235544 3577889999999999999999999999
Q ss_pred hCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHhhCCCCCC
Q 003563 164 LFPDNVDATKTGAQLFLKCGQTARSIGILEEYLKVHPSDAD 204 (810)
Q Consensus 164 ~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~ 204 (810)
..|.+..+++..|.+....=+.++|...|.++++.+|.-..
T Consensus 259 ~~~~nvKA~frRakAhaa~Wn~~eA~~D~~~vL~ldpslas 299 (329)
T KOG0545|consen 259 HHPGNVKAYFRRAKAHAAVWNEAEAKADLQKVLELDPSLAS 299 (329)
T ss_pred cCCchHHHHHHHHHHHHhhcCHHHHHHHHHHHHhcChhhHH
Confidence 99999999999999999999999999999999999987543
No 257
>PF08631 SPO22: Meiosis protein SPO22/ZIP4 like; InterPro: IPR013940 SPO22 is a meiosis-specific protein with similarity to phospholipase A2, involved in completion of nuclear divisions during meiosis; induced early in meiosis []. It is also involved in sporulation [].
Probab=97.39 E-value=0.14 Score=51.56 Aligned_cols=64 Identities=19% Similarity=0.227 Sum_probs=39.3
Q ss_pred HHHHHHHHHHHcCCHH---HHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHhhCC
Q 003563 137 LRIHLASFYVEIGDYE---KAAESYEQIQKLFPDNVDATKTGAQLFLKCGQTARSIGILEEYLKVHP 200 (810)
Q Consensus 137 ~~~~la~~~~~~g~~~---~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p 200 (810)
.+..++.+|...+.++ +|...++.+-...|+.+..+...-.+....++.+.+.+.+.+++...+
T Consensus 86 iL~~La~~~l~~~~~~~~~ka~~~l~~l~~e~~~~~~~~~L~l~il~~~~~~~~~~~~L~~mi~~~~ 152 (278)
T PF08631_consen 86 ILRLLANAYLEWDTYESVEKALNALRLLESEYGNKPEVFLLKLEILLKSFDEEEYEEILMRMIRSVD 152 (278)
T ss_pred HHHHHHHHHHcCCChHHHHHHHHHHHHHHHhCCCCcHHHHHHHHHHhccCChhHHHHHHHHHHHhcc
Confidence 3556666676666543 344455555555666666665555555556777777777777776543
No 258
>KOG0530 consensus Protein farnesyltransferase, alpha subunit/protein geranylgeranyltransferase type I, alpha subunit [Posttranslational modification, protein turnover, chaperones]
Probab=97.39 E-value=0.087 Score=49.78 Aligned_cols=187 Identities=13% Similarity=0.171 Sum_probs=147.3
Q ss_pred CCHHHHHHHHHHHHHHHc-CCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHc-CChHHHHHHHHHHHhcCCCCHHHHHH
Q 003563 29 LSPGVTKMLGEASLQYAY-GNFEQAISLLKEVVRLSPNLPETYNTLGLAHSAL-GNHKSAFDFYVIAAHLSPKDSALWKQ 106 (810)
Q Consensus 29 ~~~~~~~~l~~a~~~~~~-g~~~~A~~~~~~~l~~~p~~~~~~~~l~~~~~~~-g~~~~A~~~~~~a~~~~p~~~~~~~~ 106 (810)
.+.+....|....+.+.. ..-+.|+.+-..++..+|.+-.+|...-.++..+ .+..+-++++...++-+|++-.+|..
T Consensus 38 Yte~fr~~m~YfRAI~~~~E~S~RAl~LT~d~i~lNpAnYTVW~yRr~iL~~l~~dL~~El~~l~eI~e~npKNYQvWHH 117 (318)
T KOG0530|consen 38 YTEDFRDVMDYFRAIIAKNEKSPRALQLTEDAIRLNPANYTVWQYRRVILRHLMSDLNKELEYLDEIIEDNPKNYQVWHH 117 (318)
T ss_pred echhHHHHHHHHHHHHhccccCHHHHHHHHHHHHhCcccchHHHHHHHHHHHhHHHHHHHHHHHHHHHHhCccchhHHHH
Confidence 445666666655554444 4567899999999999999999988887777664 46778889999999999999999998
Q ss_pred HHHHHHHcCCHH-HHHHHHHHHHHcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHH-cCC
Q 003563 107 LLTFAVQKGDTA-QAMYYIRQAIRAEPKDISLRIHLASFYVEIGDYEKAAESYEQIQKLFPDNVDATKTGAQLFLK-CGQ 184 (810)
Q Consensus 107 la~~~~~~g~~~-~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~-~g~ 184 (810)
.-.+....|++. .-++..+.++..+.++-.+|...-.+....+.++.-+.+..++++.+-.+-.+|...--+... .|-
T Consensus 118 Rr~ive~l~d~s~rELef~~~~l~~DaKNYHaWshRqW~~r~F~~~~~EL~y~~~Lle~Di~NNSAWN~Ryfvi~~~~~~ 197 (318)
T KOG0530|consen 118 RRVIVELLGDPSFRELEFTKLMLDDDAKNYHAWSHRQWVLRFFKDYEDELAYADELLEEDIRNNSAWNQRYFVITNTKGV 197 (318)
T ss_pred HHHHHHHhcCcccchHHHHHHHHhccccchhhhHHHHHHHHHHhhHHHHHHHHHHHHHHhhhccchhheeeEEEEeccCC
Confidence 888888889888 888999999999999999999999999999999999999999999887776666543222222 121
Q ss_pred -----hHHHHHHHHHHHhhCCCCCChHHHHHHHHHHHH
Q 003563 185 -----TARSIGILEEYLKVHPSDADLSVIDLLVAILME 217 (810)
Q Consensus 185 -----~~~A~~~~~~~l~~~p~~~~~~~~~~la~~~~~ 217 (810)
.+.-+.+..+.+...|++.. +|+.|..++..
T Consensus 198 ~~~~~le~El~yt~~~I~~vP~NeS--aWnYL~G~l~~ 233 (318)
T KOG0530|consen 198 ISKAELERELNYTKDKILLVPNNES--AWNYLKGLLEL 233 (318)
T ss_pred ccHHHHHHHHHHHHHHHHhCCCCcc--HHHHHHHHHHh
Confidence 23345667778888999887 78888888775
No 259
>PF00515 TPR_1: Tetratricopeptide repeat; InterPro: IPR001440 The tetratrico peptide repeat (TPR) is a structural motif present in a wide range of proteins [, , ]. It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. The X-ray structure of a domain containing three TPRs from protein phosphatase 5 revealed that TPR adopts a helix-turn-helix arrangement, with adjacent TPR motifs packing in a parallel fashion, resulting in a spiral of repeating anti-parallel alpha-helices []. The two helices are denoted helix A and helix B. The packing angle between helix A and helix B is ~24 degrees; within a single TPR and generates a right-handed superhelical shape. Helix A interacts with helix B and with helix A' of the next TPR. Two protein surfaces are generated: the inner concave surface is contributed to mainly by residue on helices A, and the other surface presents residues from both helices A and B. ; GO: 0005515 protein binding; PDB: 3SF4_C 2LNI_A 1ELW_A 2C0M_A 1FCH_B 3R9A_B 2J9Q_A 2C0L_A 1KT1_A 3FWV_A ....
Probab=97.39 E-value=0.0003 Score=44.55 Aligned_cols=34 Identities=26% Similarity=0.492 Sum_probs=29.3
Q ss_pred HHHHHHHHHHHHHccCHHHHHHHHHHHHhhcCCC
Q 003563 313 GYLYLKLAECYLSLKERAHAIMFFYKALDRFEDN 346 (810)
Q Consensus 313 ~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~ 346 (810)
+.+|+.+|.++..+|++++|+.+|+++++++|++
T Consensus 1 a~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~ 34 (34)
T PF00515_consen 1 AEAYYNLGNAYFQLGDYEEALEYYQRALELDPDN 34 (34)
T ss_dssp HHHHHHHHHHHHHTT-HHHHHHHHHHHHHHSTTH
T ss_pred CHHHHHHHHHHHHhCCchHHHHHHHHHHHHCcCC
Confidence 4678999999999999999999999999999874
No 260
>COG2976 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=97.39 E-value=0.0053 Score=55.19 Aligned_cols=94 Identities=14% Similarity=0.043 Sum_probs=41.2
Q ss_pred HHHHHHHHHcCChHHHHHHHHHHHhcCCCC---HHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHH
Q 003563 71 NTLGLAHSALGNHKSAFDFYVIAAHLSPKD---SALWKQLLTFAVQKGDTAQAMYYIRQAIRAEPKDISLRIHLASFYVE 147 (810)
Q Consensus 71 ~~l~~~~~~~g~~~~A~~~~~~a~~~~p~~---~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~ 147 (810)
..++..+...|++++|+..++.++....+. .-+-.++|.+...+|.+++|+..+......+ -.+......|.++..
T Consensus 93 L~lAk~~ve~~~~d~A~aqL~~~l~~t~De~lk~l~~lRLArvq~q~~k~D~AL~~L~t~~~~~-w~~~~~elrGDill~ 171 (207)
T COG2976 93 LELAKAEVEANNLDKAEAQLKQALAQTKDENLKALAALRLARVQLQQKKADAALKTLDTIKEES-WAAIVAELRGDILLA 171 (207)
T ss_pred HHHHHHHHhhccHHHHHHHHHHHHccchhHHHHHHHHHHHHHHHHHhhhHHHHHHHHhcccccc-HHHHHHHHhhhHHHH
Confidence 334445555555555555555544322111 1123344555555555555554444322100 011123334555555
Q ss_pred cCCHHHHHHHHHHHHHhC
Q 003563 148 IGDYEKAAESYEQIQKLF 165 (810)
Q Consensus 148 ~g~~~~A~~~~~~~l~~~ 165 (810)
.|+.++|...|++++...
T Consensus 172 kg~k~~Ar~ay~kAl~~~ 189 (207)
T COG2976 172 KGDKQEARAAYEKALESD 189 (207)
T ss_pred cCchHHHHHHHHHHHHcc
Confidence 555555555555555444
No 261
>KOG2041 consensus WD40 repeat protein [General function prediction only]
Probab=97.37 E-value=0.064 Score=57.45 Aligned_cols=190 Identities=13% Similarity=0.031 Sum_probs=109.2
Q ss_pred CCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCCCH---------HHHHHHHHHHHHcCCH
Q 003563 47 GNFEQAISLLKEVVRLSPNLPETYNTLGLAHSALGNHKSAFDFYVIAAHLSPKDS---------ALWKQLLTFAVQKGDT 117 (810)
Q Consensus 47 g~~~~A~~~~~~~l~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~p~~~---------~~~~~la~~~~~~g~~ 117 (810)
=..++|++. ++.+| +|..|..++......-.++-|...|-+.-... .-. .--...|.+-.--|++
T Consensus 677 vgledA~qf----iEdnP-HprLWrllAe~Al~Kl~l~tAE~AFVrc~dY~-Gik~vkrl~~i~s~~~q~aei~~~~g~f 750 (1189)
T KOG2041|consen 677 VGLEDAIQF----IEDNP-HPRLWRLLAEYALFKLALDTAEHAFVRCGDYA-GIKLVKRLRTIHSKEQQRAEISAFYGEF 750 (1189)
T ss_pred hchHHHHHH----HhcCC-chHHHHHHHHHHHHHHhhhhHhhhhhhhcccc-chhHHHHhhhhhhHHHHhHhHhhhhcch
Confidence 344555554 34455 78999999999988888888888887654321 110 0012334444556888
Q ss_pred HHHHHHHHHHHHcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC--CHHHHHHHHHHHHHcCChHHHHHHHHHH
Q 003563 118 AQAMYYIRQAIRAEPKDISLRIHLASFYVEIGDYEKAAESYEQIQKLFPD--NVDATKTGAQLFLKCGQTARSIGILEEY 195 (810)
Q Consensus 118 ~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~--~~~~~~~la~~~~~~g~~~~A~~~~~~~ 195 (810)
++|.+.|-.+=.. + .-..++...|++-...+.++..-.-..+ -..++..+|..+..+..+++|.++|...
T Consensus 751 eeaek~yld~drr---D-----LAielr~klgDwfrV~qL~r~g~~d~dD~~~e~A~r~ig~~fa~~~~We~A~~yY~~~ 822 (1189)
T KOG2041|consen 751 EEAEKLYLDADRR---D-----LAIELRKKLGDWFRVYQLIRNGGSDDDDEGKEDAFRNIGETFAEMMEWEEAAKYYSYC 822 (1189)
T ss_pred hHhhhhhhccchh---h-----hhHHHHHhhhhHHHHHHHHHccCCCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 8888887544221 1 1123455667776665555432111111 1357778888888888888888877654
Q ss_pred HhhCCCCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhcCCCCCcHHHHHHHHHHHHhcCCHHHHHHHHHH
Q 003563 196 LKVHPSDADLSVIDLLVAILMENNAYEKTLQHIEHAQIVRFSGKELPLKLKVKAGICYLRLGNMEKAEILFAD 268 (810)
Q Consensus 196 l~~~p~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~ 268 (810)
-. ...+.++++...+|++-..+.+. -|......-.+|..+...|.-++|...|-+
T Consensus 823 ~~----------~e~~~ecly~le~f~~LE~la~~--------Lpe~s~llp~~a~mf~svGMC~qAV~a~Lr 877 (1189)
T KOG2041|consen 823 GD----------TENQIECLYRLELFGELEVLART--------LPEDSELLPVMADMFTSVGMCDQAVEAYLR 877 (1189)
T ss_pred cc----------hHhHHHHHHHHHhhhhHHHHHHh--------cCcccchHHHHHHHHHhhchHHHHHHHHHh
Confidence 21 12455666666555543333222 133344445566666666666666666554
No 262
>PF07079 DUF1347: Protein of unknown function (DUF1347); InterPro: IPR010764 This family consists of several hypothetical bacterial proteins of around 610 residues in length. Members of this family are highly conserved and seem to be specific to Chlamydia species. The function of this family is unknown.
Probab=97.36 E-value=0.23 Score=50.93 Aligned_cols=130 Identities=11% Similarity=-0.030 Sum_probs=96.0
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChH-----HHHHHHHHHHHcCChHHHHHHHHHHHhcCCCCHHHHHHHHH
Q 003563 35 KMLGEASLQYAYGNFEQAISLLKEVVRLSPNLPE-----TYNTLGLAHSALGNHKSAFDFYVIAAHLSPKDSALWKQLLT 109 (810)
Q Consensus 35 ~~l~~a~~~~~~g~~~~A~~~~~~~l~~~p~~~~-----~~~~l~~~~~~~g~~~~A~~~~~~a~~~~p~~~~~~~~la~ 109 (810)
.+..+|..+..++++++|..+|.++.+...+.+- .+..+..-.+-+++.+.-...+...-+..|..+....-.|.
T Consensus 8 llc~Qgf~Lqkq~~~~esEkifskI~~e~~~~~f~lkeEvl~grilnAffl~nld~Me~~l~~l~~~~~~s~~l~LF~~L 87 (549)
T PF07079_consen 8 LLCFQGFILQKQKKFQESEKIFSKIYDEKESSPFLLKEEVLGGRILNAFFLNNLDLMEKQLMELRQQFGKSAYLPLFKAL 87 (549)
T ss_pred HHHHhhHHHHHHhhhhHHHHHHHHHHHHhhcchHHHHHHHHhhHHHHHHHHhhHHHHHHHHHHHHHhcCCchHHHHHHHH
Confidence 4567889999999999999999999876555432 33333333344567777666666666778888888888899
Q ss_pred HHHHcCCHHHHHHHHHHHHHcCCCCH---------------HHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Q 003563 110 FAVQKGDTAQAMYYIRQAIRAEPKDI---------------SLRIHLASFYVEIGDYEKAAESYEQIQKL 164 (810)
Q Consensus 110 ~~~~~g~~~~A~~~~~~al~~~p~~~---------------~~~~~la~~~~~~g~~~~A~~~~~~~l~~ 164 (810)
..++.+++.+|+..+......-.+.. ..-...|.++...|.+.++...+++.+..
T Consensus 88 ~~Y~~k~~~kal~~ls~w~~~~~~~~~~~Ld~ni~~l~~df~l~~i~a~sLIe~g~f~EgR~iLn~i~~~ 157 (549)
T PF07079_consen 88 VAYKQKEYRKALQALSVWKEQIKGTESPWLDTNIQQLFSDFFLDEIEAHSLIETGRFSEGRAILNRIIER 157 (549)
T ss_pred HHHHhhhHHHHHHHHHHHHhhhcccccchhhhhHHHHhhHHHHHHHHHHHHHhcCCcchHHHHHHHHHHH
Confidence 99999999999998877665421111 11234678899999999999999998764
No 263
>PF07719 TPR_2: Tetratricopeptide repeat; InterPro: IPR013105 The tetratrico peptide repeat (TPR) is a structural motif present in a wide range of proteins [, , ]. It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. This repeat includes outlying Tetratricopeptide-like repeats (TPR) that are not matched by IPR001440 from INTERPRO.; PDB: 1XNF_B 3Q15_A 4ABN_A 1OUV_A 3U4T_A 3MA5_C 2KCV_A 2KCL_A 2XEV_A 3NF1_A ....
Probab=97.36 E-value=0.00048 Score=43.58 Aligned_cols=34 Identities=29% Similarity=0.399 Sum_probs=29.3
Q ss_pred HHHHHHHHHHHHHccCHHHHHHHHHHHHhhcCCC
Q 003563 313 GYLYLKLAECYLSLKERAHAIMFFYKALDRFEDN 346 (810)
Q Consensus 313 ~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~ 346 (810)
+.+++.+|.++..+|++++|+++|+++++++|++
T Consensus 1 a~~~~~lg~~~~~~~~~~~A~~~~~~al~l~p~~ 34 (34)
T PF07719_consen 1 AEAWYYLGQAYYQLGNYEEAIEYFEKALELDPNN 34 (34)
T ss_dssp HHHHHHHHHHHHHTT-HHHHHHHHHHHHHHSTTS
T ss_pred CHHHHHHHHHHHHhCCHHHHHHHHHHHHHHCcCC
Confidence 4678899999999999999999999999999875
No 264
>PF13176 TPR_7: Tetratricopeptide repeat; PDB: 3SF4_C 3RO3_A 3RO2_A.
Probab=97.32 E-value=0.0002 Score=45.93 Aligned_cols=31 Identities=35% Similarity=0.514 Sum_probs=26.7
Q ss_pred hhhhHHHHHHHhChhhHHHHHHHHHhccccc
Q 003563 724 ALYNIARACHHVGLVSLAASYYEKVLAIKEK 754 (810)
Q Consensus 724 ~~ynlgr~~~~lg~~~~Ai~~Y~~vL~~~~~ 754 (810)
++.|||++|.+.|.++.|+++|+++|.+.++
T Consensus 1 al~~Lg~~~~~~g~~~~Ai~~y~~aL~l~~~ 31 (36)
T PF13176_consen 1 ALNNLGRIYRQQGDYEKAIEYYEQALALARD 31 (36)
T ss_dssp HHHHHHHHHHHCT-HHHHHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHcCCHHHHHHHHHHHHHhccc
Confidence 4789999999999999999999998877644
No 265
>COG2909 MalT ATP-dependent transcriptional regulator [Transcription]
Probab=97.28 E-value=0.48 Score=53.07 Aligned_cols=294 Identities=12% Similarity=0.017 Sum_probs=176.4
Q ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHhCCCC-hHHHHHHHHHHHHcCChHHHHHHHHHHHhcCC-----CCHHHHHHHHHH
Q 003563 37 LGEASLQYAYGNFEQAISLLKEVVRLSPNL-PETYNTLGLAHSALGNHKSAFDFYVIAAHLSP-----KDSALWKQLLTF 110 (810)
Q Consensus 37 l~~a~~~~~~g~~~~A~~~~~~~l~~~p~~-~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~p-----~~~~~~~~la~~ 110 (810)
...+.-+...|...+|+...-.+ .+|.. ....-..+.-....++..- +...+..-| .+|......+..
T Consensus 351 ~~Aa~w~~~~g~~~eAI~hAlaA--~d~~~aa~lle~~~~~L~~~~~lsl----l~~~~~~lP~~~l~~~P~Lvll~aW~ 424 (894)
T COG2909 351 RAAAEWFAEHGLPSEAIDHALAA--GDPEMAADLLEQLEWQLFNGSELSL----LLAWLKALPAELLASTPRLVLLQAWL 424 (894)
T ss_pred HHHHHHHHhCCChHHHHHHHHhC--CCHHHHHHHHHhhhhhhhcccchHH----HHHHHHhCCHHHHhhCchHHHHHHHH
Confidence 44556667788899998876544 23321 1222233444444444432 222232333 345666677888
Q ss_pred HHHcCCHHHHHHHHHHHHHcCCC--C-------HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCH-----HHHHHHH
Q 003563 111 AVQKGDTAQAMYYIRQAIRAEPK--D-------ISLRIHLASFYVEIGDYEKAAESYEQIQKLFPDNV-----DATKTGA 176 (810)
Q Consensus 111 ~~~~g~~~~A~~~~~~al~~~p~--~-------~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~-----~~~~~la 176 (810)
.....++.+|..+..++...-|. . ....-..|.+....|++++|++..+.++..-|.+. .+...+|
T Consensus 425 ~~s~~r~~ea~~li~~l~~~l~~~~~~~~~~l~ae~~aL~a~val~~~~~e~a~~lar~al~~L~~~~~~~r~~~~sv~~ 504 (894)
T COG2909 425 LASQHRLAEAETLIARLEHFLKAPMHSRQGDLLAEFQALRAQVALNRGDPEEAEDLARLALVQLPEAAYRSRIVALSVLG 504 (894)
T ss_pred HHHccChHHHHHHHHHHHHHhCcCcccchhhHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhcccccchhhhhhhhhhh
Confidence 88899999999999988775433 1 23345577888899999999999999999887753 5677889
Q ss_pred HHHHHcCChHHHHHHHHHHHhhCCCCCC----hHHHHHHHHHHHHcCC--HHHHHHHHHHHHHHhcCCCCC---cHHHHH
Q 003563 177 QLFLKCGQTARSIGILEEYLKVHPSDAD----LSVIDLLVAILMENNA--YEKTLQHIEHAQIVRFSGKEL---PLKLKV 247 (810)
Q Consensus 177 ~~~~~~g~~~~A~~~~~~~l~~~p~~~~----~~~~~~la~~~~~~g~--~~~A~~~~~~~~~~~~~~~~~---~~~~~~ 247 (810)
.+..-.|++++|..+...+.+....... ..+....+.++..+|+ +.+....+...........+. ...++.
T Consensus 505 ~a~~~~G~~~~Al~~~~~a~~~a~~~~~~~l~~~~~~~~s~il~~qGq~~~a~~~~~~~~~~~q~l~q~~~~~f~~~~r~ 584 (894)
T COG2909 505 EAAHIRGELTQALALMQQAEQMARQHDVYHLALWSLLQQSEILEAQGQVARAEQEKAFNLIREQHLEQKPRHEFLVRIRA 584 (894)
T ss_pred HHHHHhchHHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHhhhcccchhHHHHHH
Confidence 9999999999999999888776333222 1234456778888883 333334444333322211222 223333
Q ss_pred HHHHHHHhcCCHHHHHHHHHHhh----ccCCch--hHhHHHHHHHHHHHcCCcHHHHHHHHHHHhccCCC----CHHHH-
Q 003563 248 KAGICYLRLGNMEKAEILFADLQ----WKNAID--HADLITEVADTLMSLGHSNSALKYYHFLETNAGTD----NGYLY- 316 (810)
Q Consensus 248 ~la~~~~~~g~~~~A~~~~~~~~----~~~~~~--~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~----~~~~~- 316 (810)
.+..++.+ ++.+..-....+ ...+.. ..-....++.+....|++++|...+..+....... +..+.
T Consensus 585 ~ll~~~~r---~~~~~~ear~~~~~~~~~~~~~~~~~~~~~~LA~l~~~~Gdl~~A~~~l~~~~~l~~~~~~~~~~~a~~ 661 (894)
T COG2909 585 QLLRAWLR---LDLAEAEARLGIEVGSVYTPQPLLSRLALSMLAELEFLRGDLDKALAQLDELERLLLNGQYHVDYLAAA 661 (894)
T ss_pred HHHHHHHH---HhhhhHHhhhcchhhhhcccchhHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHhcCCCCCchHHHHH
Confidence 33333333 444443333322 222211 12223589999999999999999998876552222 11111
Q ss_pred -HHHHHHHHHccCHHHHHHHHHHH
Q 003563 317 -LKLAECYLSLKERAHAIMFFYKA 339 (810)
Q Consensus 317 -~~la~~~~~~g~~~~A~~~~~~a 339 (810)
..........|+.+.|.....+.
T Consensus 662 ~~v~~~lwl~qg~~~~a~~~l~~s 685 (894)
T COG2909 662 YKVKLILWLAQGDKELAAEWLLKS 685 (894)
T ss_pred HHhhHHHhcccCCHHHHHHHHHhc
Confidence 12223344678888888777763
No 266
>PRK11619 lytic murein transglycosylase; Provisional
Probab=97.24 E-value=0.56 Score=52.91 Aligned_cols=321 Identities=12% Similarity=0.069 Sum_probs=180.0
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHcC--ChHHHHHHHHHHHhcCCCCHHHHHHHHHH
Q 003563 33 VTKMLGEASLQYAYGNFEQAISLLKEVVRLSPNLPETYNTLGLAHSALG--NHKSAFDFYVIAAHLSPKDSALWKQLLTF 110 (810)
Q Consensus 33 ~~~~l~~a~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~l~~~~~~~g--~~~~A~~~~~~a~~~~p~~~~~~~~la~~ 110 (810)
....+..|...+..|++..+.....++ ...|- ..|...-.+....+ .++ .+...+...|+.+.........
T Consensus 33 ~r~~f~~A~~a~~~g~~~~~~~~~~~l-~d~pL--~~yl~y~~L~~~l~~~~~~----ev~~Fl~~~~~~P~~~~Lr~~~ 105 (644)
T PRK11619 33 QRQRYQQIKQAWDNRQMDVVEQLMPTL-KDYPL--YPYLEYRQLTQDLMNQPAV----QVTNFIRANPTLPPARSLQSRF 105 (644)
T ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHhc-cCCCc--HhHHHHHHHHhccccCCHH----HHHHHHHHCCCCchHHHHHHHH
Confidence 367889999999999999987766654 33442 22333333322323 233 3334455677766544433332
Q ss_pred ---HHHcCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCChHH
Q 003563 111 ---AVQKGDTAQAMYYIRQAIRAEPKDISLRIHLASFYVEIGDYEKAAESYEQIQKLFPDNVDATKTGAQLFLKCGQTAR 187 (810)
Q Consensus 111 ---~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~ 187 (810)
+.+.+++..-+.++ ...|.+.......+......|+.++|.....++.......+.....+-..+...|....
T Consensus 106 l~~La~~~~w~~~~~~~----~~~p~~~~~~c~~~~A~~~~G~~~~A~~~a~~lW~~g~~~p~~cd~l~~~~~~~g~lt~ 181 (644)
T PRK11619 106 VNELARREDWRGLLAFS----PEKPKPVEARCNYYYAKWATGQQQEAWQGAKELWLTGKSLPNACDKLFSVWQQSGKQDP 181 (644)
T ss_pred HHHHHHccCHHHHHHhc----CCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHhccCCCCChHHHHHHHHHHHcCCCCH
Confidence 23456666555533 23478888888888899999999989888888776655555555555444444444433
Q ss_pred HHHHHHHHH-hhCCCCCChHHHHHHHHHH-----------H-HcCCHHHHHHHHHHHHHHhcCCCCCcHHHHHHHHHHHH
Q 003563 188 SIGILEEYL-KVHPSDADLSVIDLLVAIL-----------M-ENNAYEKTLQHIEHAQIVRFSGKELPLKLKVKAGICYL 254 (810)
Q Consensus 188 A~~~~~~~l-~~~p~~~~~~~~~~la~~~-----------~-~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~la~~~~ 254 (810)
... .+++. .....+.. ....+...+ . -..+...+...+. ..+ ......-...++....
T Consensus 182 ~d~-w~R~~~al~~~~~~--lA~~l~~~l~~~~~~~a~a~~al~~~p~~~~~~~~----~~~--~~~~~~~~~~~~l~Rl 252 (644)
T PRK11619 182 LAY-LERIRLAMKAGNTG--LVTYLAKQLPADYQTIASALIKLQNDPNTVETFAR----TTG--PTDFTRQMAAVAFASV 252 (644)
T ss_pred HHH-HHHHHHHHHCCCHH--HHHHHHHhcChhHHHHHHHHHHHHHCHHHHHHHhh----ccC--CChhhHHHHHHHHHHH
Confidence 321 11111 11111111 111111111 0 0111111111111 100 0111112233444455
Q ss_pred hcCCHHHHHHHHHHhhccC---CchhHhHHHHHHHHHHHcCCcHHHHHHHHHHHhccCCCCHHHHHHHHHHHHHccCHHH
Q 003563 255 RLGNMEKAEILFADLQWKN---AIDHADLITEVADTLMSLGHSNSALKYYHFLETNAGTDNGYLYLKLAECYLSLKERAH 331 (810)
Q Consensus 255 ~~g~~~~A~~~~~~~~~~~---~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~ 331 (810)
...+.+.|...+.+..... +.....+...+|.-....+...+|...+..+... ..+....-.........++++.
T Consensus 253 ar~d~~~A~~~~~~~~~~~~~~~~~~~~~~~~lA~~~a~~~~~~~a~~w~~~~~~~--~~~~~~~e~r~r~Al~~~dw~~ 330 (644)
T PRK11619 253 ARQDAENARLMIPSLVRAQKLNEDQRQELRDIVAWRLMGNDVTDEQAKWRDDVIMR--SQSTSLLERRVRMALGTGDRRG 330 (644)
T ss_pred HHhCHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHhccCCHHHHHHHHhcccc--cCCcHHHHHHHHHHHHccCHHH
Confidence 6677888999888753322 2223344556665555554477888888766533 2333444444455568889988
Q ss_pred HHHHHHHHHhhcCCCHHHHHHHHHHHHHcCCHHHHHHhcCCCCC
Q 003563 332 AIMFFYKALDRFEDNIDARLTLASLLLEEAKEEEAITLLSPPKD 375 (810)
Q Consensus 332 A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~ 375 (810)
+...+...-..........+.+|..+...|+.++|..+|+++..
T Consensus 331 ~~~~i~~L~~~~~~~~rw~YW~aRa~~~~g~~~~A~~~~~~~a~ 374 (644)
T PRK11619 331 LNTWLARLPMEAKEKDEWRYWQADLLLEQGRKAEAEEILRQLMQ 374 (644)
T ss_pred HHHHHHhcCHhhccCHhhHHHHHHHHHHcCCHHHHHHHHHHHhc
Confidence 88887775444446678889999999999999999999998743
No 267
>PF03704 BTAD: Bacterial transcriptional activator domain; InterPro: IPR005158 Found in the DNRI/REDD/AFSR family of regulators, this region of AFSR (P25941 from SWISSPROT) along with the C-terminal region is capable of independently directing actinorhodin production. It is important for the formation of secondary metabolites.; PDB: 2FF4_B 2FEZ_A.
Probab=97.22 E-value=0.0086 Score=53.70 Aligned_cols=61 Identities=20% Similarity=0.284 Sum_probs=36.8
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Q 003563 103 LWKQLLTFAVQKGDTAQAMYYIRQAIRAEPKDISLRIHLASFYVEIGDYEKAAESYEQIQK 163 (810)
Q Consensus 103 ~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~ 163 (810)
+...++..+...|++++|+..+++++..+|.+..++..+..++...|+..+|+..|+++..
T Consensus 64 ~~~~l~~~~~~~~~~~~a~~~~~~~l~~dP~~E~~~~~lm~~~~~~g~~~~A~~~Y~~~~~ 124 (146)
T PF03704_consen 64 ALERLAEALLEAGDYEEALRLLQRALALDPYDEEAYRLLMRALAAQGRRAEALRVYERYRR 124 (146)
T ss_dssp HHHHHHHHHHHTT-HHHHHHHHHHHHHHSTT-HHHHHHHHHHHHHTT-HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhccCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHCcCHHHHHHHHHHHHH
Confidence 4445556666666666666666666666666666666666666666666666666665543
No 268
>KOG0551 consensus Hsp90 co-chaperone CNS1 (contains TPR repeats) [Posttranslational modification, protein turnover, chaperones]
Probab=97.22 E-value=0.0024 Score=61.95 Aligned_cols=108 Identities=20% Similarity=0.137 Sum_probs=94.4
Q ss_pred cCCchhHhHHHHHHHHHHHcCCcHHHHHHHHHHHhccCCC---CHHHHHHHHHHHHHccCHHHHHHHHHHHHhhcCCCHH
Q 003563 272 KNAIDHADLITEVADTLMSLGHSNSALKYYHFLETNAGTD---NGYLYLKLAECYLSLKERAHAIMFFYKALDRFEDNID 348 (810)
Q Consensus 272 ~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~---~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~ 348 (810)
..|...+.-+-.-|+-|++.++|..|...|.+.+....++ +..+|.+.|-|....|+|..|+....+++..+|.+..
T Consensus 75 ~ep~E~Aen~KeeGN~~fK~Kryk~A~~~Yt~Glk~kc~D~dlnavLY~NRAAa~~~l~NyRs~l~Dcs~al~~~P~h~K 154 (390)
T KOG0551|consen 75 GEPHEQAENYKEEGNEYFKEKRYKDAVESYTEGLKKKCADPDLNAVLYTNRAAAQLYLGNYRSALNDCSAALKLKPTHLK 154 (390)
T ss_pred CChHHHHHHHHHHhHHHHHhhhHHHHHHHHHHHHhhcCCCccHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHhcCcchhh
Confidence 3444556667788999999999999999999988763332 6678999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHcCCHHHHHHhcCCCCCCCcc
Q 003563 349 ARLTLASLLLEEAKEEEAITLLSPPKDLDSL 379 (810)
Q Consensus 349 ~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~ 379 (810)
+++.=+.++..+.++++|..+.+..+..+..
T Consensus 155 a~~R~Akc~~eLe~~~~a~nw~ee~~~~d~e 185 (390)
T KOG0551|consen 155 AYIRGAKCLLELERFAEAVNWCEEGLQIDDE 185 (390)
T ss_pred hhhhhhHHHHHHHHHHHHHHHHhhhhhhhHH
Confidence 9999999999999999999999988776653
No 269
>PF10300 DUF3808: Protein of unknown function (DUF3808); InterPro: IPR019412 This entry represents a family of proteins conserved from fungi to humans. In humans this protein is expressed in primary breast carcinomas but not in normal breast tissue, and has a putative eukaryotic RNP-1 RNA binding region and a candidate anchoring transmembrane domain. The human protein is coordinately regulated with oestrogen receptor, but is not necessarily oestradiol-responsive []. Members of this family carry a tetratricopeptide repeat (IPR013105 from INTERPRO) at their C terminus.
Probab=97.18 E-value=0.015 Score=62.90 Aligned_cols=182 Identities=18% Similarity=0.093 Sum_probs=130.5
Q ss_pred HHHHHHHHHhCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHhhCCCCCChHHHHHH-----HHHHH----HcCCHHHHH
Q 003563 155 AESYEQIQKLFPDNVDATKTGAQLFLKCGQTARSIGILEEYLKVHPSDADLSVIDLL-----VAILM----ENNAYEKTL 225 (810)
Q Consensus 155 ~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~~~l-----a~~~~----~~g~~~~A~ 225 (810)
.-.|.-++.+-|. ....+..+.--.|+-+.+++.+.++.+...-......+..+ ..... .....+.|.
T Consensus 177 ~G~f~L~lSlLPp---~~~kll~~vGF~gdR~~GL~~L~~~~~~~~i~~~la~L~LL~y~~~~~~~~~~~~~~~~~~~a~ 253 (468)
T PF10300_consen 177 FGLFNLVLSLLPP---KVLKLLSFVGFSGDRELGLRLLWEASKSENIRSPLAALVLLWYHLVVPSFLGIDGEDVPLEEAE 253 (468)
T ss_pred HHHHHHHHHhCCH---HHHHHHhhcCcCCcHHHHHHHHHHHhccCCcchHHHHHHHHHHHHHHHHHcCCcccCCCHHHHH
Confidence 3455666666663 23344445556789999999999887632111111111111 11111 345678888
Q ss_pred HHHHHHHHHhcCCCCCcHHHHHHHHHHHHhcCCHHHHHHHHHHhhccC---CchhHhHHHHHHHHHHHcCCcHHHHHHHH
Q 003563 226 QHIEHAQIVRFSGKELPLKLKVKAGICYLRLGNMEKAEILFADLQWKN---AIDHADLITEVADTLMSLGHSNSALKYYH 302 (810)
Q Consensus 226 ~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~---~~~~~~~~~~la~~~~~~~~~~~A~~~~~ 302 (810)
+.+...... .|...-..+..|.++...|+.++|+..|++++... +.-..-.++.++.++.-..+|++|...+.
T Consensus 254 ~lL~~~~~~----yP~s~lfl~~~gR~~~~~g~~~~Ai~~~~~a~~~q~~~~Ql~~l~~~El~w~~~~~~~w~~A~~~f~ 329 (468)
T PF10300_consen 254 ELLEEMLKR----YPNSALFLFFEGRLERLKGNLEEAIESFERAIESQSEWKQLHHLCYFELAWCHMFQHDWEEAAEYFL 329 (468)
T ss_pred HHHHHHHHh----CCCcHHHHHHHHHHHHHhcCHHHHHHHHHHhccchhhHHhHHHHHHHHHHHHHHHHchHHHHHHHHH
Confidence 899888888 67778888899999999999999999999876422 22244568899999999999999999999
Q ss_pred HHHhccCCCCHHHHHHHHHHHHHccCH-------HHHHHHHHHHHhhc
Q 003563 303 FLETNAGTDNGYLYLKLAECYLSLKER-------AHAIMFFYKALDRF 343 (810)
Q Consensus 303 ~~~~~~~~~~~~~~~~la~~~~~~g~~-------~~A~~~~~~al~~~ 343 (810)
.+.+.+........+..|-|+...|+. ++|.+.+.++-...
T Consensus 330 ~L~~~s~WSka~Y~Y~~a~c~~~l~~~~~~~~~~~~a~~l~~~vp~l~ 377 (468)
T PF10300_consen 330 RLLKESKWSKAFYAYLAAACLLMLGREEEAKEHKKEAEELFRKVPKLK 377 (468)
T ss_pred HHHhccccHHHHHHHHHHHHHHhhccchhhhhhHHHHHHHHHHHHHHH
Confidence 999875555666778889999999998 99999999887653
No 270
>KOG0551 consensus Hsp90 co-chaperone CNS1 (contains TPR repeats) [Posttranslational modification, protein turnover, chaperones]
Probab=97.18 E-value=0.0081 Score=58.47 Aligned_cols=100 Identities=15% Similarity=0.162 Sum_probs=88.7
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC----ChHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCCCHHHHHHHH
Q 003563 33 VTKMLGEASLQYAYGNFEQAISLLKEVVRLSPN----LPETYNTLGLAHSALGNHKSAFDFYVIAAHLSPKDSALWKQLL 108 (810)
Q Consensus 33 ~~~~l~~a~~~~~~g~~~~A~~~~~~~l~~~p~----~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~p~~~~~~~~la 108 (810)
+..+-..|+.+++..+|..|+..|.+.|...-. ++..|.+.+.+.+..|+|..|+....+++..+|.+..+++.-|
T Consensus 81 Aen~KeeGN~~fK~Kryk~A~~~Yt~Glk~kc~D~dlnavLY~NRAAa~~~l~NyRs~l~Dcs~al~~~P~h~Ka~~R~A 160 (390)
T KOG0551|consen 81 AENYKEEGNEYFKEKRYKDAVESYTEGLKKKCADPDLNAVLYTNRAAAQLYLGNYRSALNDCSAALKLKPTHLKAYIRGA 160 (390)
T ss_pred HHHHHHHhHHHHHhhhHHHHHHHHHHHHhhcCCCccHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHhcCcchhhhhhhhh
Confidence 444557899999999999999999999987444 4556889999999999999999999999999999999999999
Q ss_pred HHHHHcCCHHHHHHHHHHHHHcCC
Q 003563 109 TFAVQKGDTAQAMYYIRQAIRAEP 132 (810)
Q Consensus 109 ~~~~~~g~~~~A~~~~~~al~~~p 132 (810)
.|++.+.++++|....+..+.++.
T Consensus 161 kc~~eLe~~~~a~nw~ee~~~~d~ 184 (390)
T KOG0551|consen 161 KCLLELERFAEAVNWCEEGLQIDD 184 (390)
T ss_pred HHHHHHHHHHHHHHHHhhhhhhhH
Confidence 999999999999999998876543
No 271
>KOG0890 consensus Protein kinase of the PI-3 kinase family involved in mitotic growth, DNA repair and meiotic recombination [Signal transduction mechanisms; Chromatin structure and dynamics; Replication, recombination and repair; Cell cycle control, cell division, chromosome partitioning]
Probab=97.18 E-value=0.4 Score=59.42 Aligned_cols=325 Identities=12% Similarity=0.063 Sum_probs=190.5
Q ss_pred HHHHHHHHcCCHHHHHHHHHHHHHhCCC----ChHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCCCHHHHHHHHHHHHH
Q 003563 38 GEASLQYAYGNFEQAISLLKEVVRLSPN----LPETYNTLGLAHSALGNHKSAFDFYVIAAHLSPKDSALWKQLLTFAVQ 113 (810)
Q Consensus 38 ~~a~~~~~~g~~~~A~~~~~~~l~~~p~----~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~p~~~~~~~~la~~~~~ 113 (810)
..|.+-++.+.|..|+-++++- ...+. ....++.+-.+|...++++.-......- ..+| ...........
T Consensus 1388 tLa~aSfrc~~y~RalmylEs~-~~~ek~~~~~e~l~fllq~lY~~i~dpDgV~Gv~~~r-~a~~----sl~~qil~~e~ 1461 (2382)
T KOG0890|consen 1388 TLARASFRCKAYARALMYLESH-RSTEKEKETEEALYFLLQNLYGSIHDPDGVEGVSARR-FADP----SLYQQILEHEA 1461 (2382)
T ss_pred HHHHHHHhhHHHHHHHHHHHHh-ccccchhHHHHHHHHHHHHHHHhcCCcchhhhHHHHh-hcCc----cHHHHHHHHHh
Confidence 4677789999999999999985 22222 1223444555888999998766665531 1122 24445556677
Q ss_pred cCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHH-HHHHHcCChHHHHHHH
Q 003563 114 KGDTAQAMYYIRQAIRAEPKDISLRIHLASFYVEIGDYEKAAESYEQIQKLFPDNVDATKTGA-QLFLKCGQTARSIGIL 192 (810)
Q Consensus 114 ~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~la-~~~~~~g~~~~A~~~~ 192 (810)
.|++..|..||+++++.+|+....+...-......|.+...+...+-.....++..+-+..++ .+..+.++++.-..+.
T Consensus 1462 ~g~~~da~~Cye~~~q~~p~~~~~~~g~l~sml~~~~l~t~i~~~dg~~~~~se~~~~~~s~~~eaaW~l~qwD~~e~~l 1541 (2382)
T KOG0890|consen 1462 SGNWADAAACYERLIQKDPDKEKHHSGVLKSMLAIQHLSTEILHLDGLIINRSEEVDELNSLGVEAAWRLSQWDLLESYL 1541 (2382)
T ss_pred hccHHHHHHHHHHhhcCCCccccchhhHHHhhhcccchhHHHhhhcchhhccCHHHHHHHHHHHHHHhhhcchhhhhhhh
Confidence 899999999999999999998877777777778888888888877766665555554444443 2335666665544442
Q ss_pred HHHHhhCCCCCChHHHHHHHHHHHH-----------------------------cCCHHHHHHHHHHHHHHh--------
Q 003563 193 EEYLKVHPSDADLSVIDLLVAILME-----------------------------NNAYEKTLQHIEHAQIVR-------- 235 (810)
Q Consensus 193 ~~~l~~~p~~~~~~~~~~la~~~~~-----------------------------~g~~~~A~~~~~~~~~~~-------- 235 (810)
. +.+...|.+. .+|.+... .|.+..+.+..-+.....
T Consensus 1542 ~-----~~n~e~w~~~-~~g~~ll~~~~kD~~~~~~~i~~~r~~~i~~lsa~s~~~Sy~~~Y~~~~kLH~l~el~~~~~~ 1615 (2382)
T KOG0890|consen 1542 S-----DRNIEYWSVE-SIGKLLLRNKKKDEIATLDLIENSRELVIENLSACSIEGSYVRSYEILMKLHLLLELENSIEE 1615 (2382)
T ss_pred h-----cccccchhHH-HHHHHHHhhcccchhhHHHHHHHHHHHhhhhHHHhhccchHHHHHHHHHHHHHHHHHHHHHHH
Confidence 2 0111111010 01111111 112223333322221110
Q ss_pred ----cCC-----CCCcHHHHHHHHHHHHhcCCHHHHHHHHHHhh---ccC---CchhHhHHHHHHHHHHHcCCcHHHHHH
Q 003563 236 ----FSG-----KELPLKLKVKAGICYLRLGNMEKAEILFADLQ---WKN---AIDHADLITEVADTLMSLGHSNSALKY 300 (810)
Q Consensus 236 ----~~~-----~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~---~~~---~~~~~~~~~~la~~~~~~~~~~~A~~~ 300 (810)
..+ ..+++..+.....-+.. ..+-+-.+++.. ..+ .....+.|...|++....|+++.|...
T Consensus 1616 l~~~s~~~~s~~~sd~W~~Rl~~tq~s~~---~~epILa~RRs~l~~~~~~~~~~~~ge~wLqsAriaR~aG~~q~A~na 1692 (2382)
T KOG0890|consen 1616 LKKVSYDEDSANNSDNWKNRLERTQPSFR---IKEPILAFRRSMLDLRMRSNLKSRLGECWLQSARIARLAGHLQRAQNA 1692 (2382)
T ss_pred hhccCccccccccchhHHHHHHHhchhHH---HHhHHHHHHHHHHHHhccccccchhHHHHHHHHHHHHhcccHHHHHHH
Confidence 000 11112222222222222 233333333321 112 234677899999999999999999988
Q ss_pred HHHHHhccCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHhhc-CCC----------------HHHHHHHHHHHHHcCCH
Q 003563 301 YHFLETNAGTDNGYLYLKLAECYLSLKERAHAIMFFYKALDRF-EDN----------------IDARLTLASLLLEEAKE 363 (810)
Q Consensus 301 ~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~-p~~----------------~~~~~~la~~~~~~g~~ 363 (810)
+-.+.+. ..+.+....|..+...|+-..|+..+++.++.+ |+. ..+...++......|++
T Consensus 1693 ll~A~e~---r~~~i~~E~AK~lW~~gd~~~Al~~Lq~~l~~~~~~~~~~~~~~p~~~n~~i~~~~~L~~~~~~~es~n~ 1769 (2382)
T KOG0890|consen 1693 LLNAKES---RLPEIVLERAKLLWQTGDELNALSVLQEILSKNFPDLHTPYTDTPQSVNLLIFKKAKLKITKYLEESGNF 1769 (2382)
T ss_pred HHhhhhc---ccchHHHHHHHHHHhhccHHHHHHHHHHHHHhhcccccCCccccchhhhhhhhhhHHHHHHHHHHHhcch
Confidence 8777654 377888999999999999999999999998653 321 12334444455555553
Q ss_pred --HHHHHhcCCCCCCCccc
Q 003563 364 --EEAITLLSPPKDLDSLD 380 (810)
Q Consensus 364 --~~A~~~~~~a~~~~~~~ 380 (810)
+.-+++|..+.+..|..
T Consensus 1770 ~s~~ilk~Y~~~~ail~ew 1788 (2382)
T KOG0890|consen 1770 ESKDILKYYHDAKAILPEW 1788 (2382)
T ss_pred hHHHHHHHHHHHHHHcccc
Confidence 34556677777777743
No 272
>PF03704 BTAD: Bacterial transcriptional activator domain; InterPro: IPR005158 Found in the DNRI/REDD/AFSR family of regulators, this region of AFSR (P25941 from SWISSPROT) along with the C-terminal region is capable of independently directing actinorhodin production. It is important for the formation of secondary metabolites.; PDB: 2FF4_B 2FEZ_A.
Probab=97.16 E-value=0.014 Score=52.41 Aligned_cols=97 Identities=24% Similarity=0.275 Sum_probs=77.3
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC----------------------hHHHHHHHHHHHHcCChHHHHHHH
Q 003563 33 VTKMLGEASLQYAYGNFEQAISLLKEVVRLSPNL----------------------PETYNTLGLAHSALGNHKSAFDFY 90 (810)
Q Consensus 33 ~~~~l~~a~~~~~~g~~~~A~~~~~~~l~~~p~~----------------------~~~~~~l~~~~~~~g~~~~A~~~~ 90 (810)
...+...|......|+.+.++..+.+++...... ..+...++..+...|++++|+..+
T Consensus 6 F~~~~~~a~~~~~~~~~~~~~~~~~~al~ly~G~~l~~~~~~~W~~~~r~~l~~~~~~~~~~l~~~~~~~~~~~~a~~~~ 85 (146)
T PF03704_consen 6 FEALVREARAAARAGDPEEAIELLEEALALYRGDFLPDLDDEEWVEPERERLRELYLDALERLAEALLEAGDYEEALRLL 85 (146)
T ss_dssp HHHHHHHHHHHHHTT-HHHHHHHHHHHHTT--SSTTGGGTTSTTHHHHHHHHHHHHHHHHHHHHHHHHHTT-HHHHHHHH
T ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHHHHhCCCCCCCCCccHHHHHHHHHHHHHHHHHHHHHHHHHHhccCHHHHHHHH
Confidence 3445566777788899999999999998863221 124566777888999999999999
Q ss_pred HHHHhcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Q 003563 91 VIAAHLSPKDSALWKQLLTFAVQKGDTAQAMYYIRQAIR 129 (810)
Q Consensus 91 ~~a~~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~ 129 (810)
++++..+|.+..+|..+..++...|+..+|+..|++...
T Consensus 86 ~~~l~~dP~~E~~~~~lm~~~~~~g~~~~A~~~Y~~~~~ 124 (146)
T PF03704_consen 86 QRALALDPYDEEAYRLLMRALAAQGRRAEALRVYERYRR 124 (146)
T ss_dssp HHHHHHSTT-HHHHHHHHHHHHHTT-HHHHHHHHHHHHH
T ss_pred HHHHhcCCCCHHHHHHHHHHHHHCcCHHHHHHHHHHHHH
Confidence 999999999999999999999999999999999998865
No 273
>PF13174 TPR_6: Tetratricopeptide repeat; PDB: 3QKY_A 2XEV_A 3URZ_B 2Q7F_A.
Probab=97.15 E-value=0.00053 Score=43.03 Aligned_cols=32 Identities=25% Similarity=0.473 Sum_probs=30.1
Q ss_pred hhhhhHHHHHHHhChhhHHHHHHHHHhccccc
Q 003563 723 EALYNIARACHHVGLVSLAASYYEKVLAIKEK 754 (810)
Q Consensus 723 e~~ynlgr~~~~lg~~~~Ai~~Y~~vL~~~~~ 754 (810)
++.|++|++|..+|.+..|+.+|+++++..|+
T Consensus 1 ~a~~~~a~~~~~~g~~~~A~~~~~~~~~~~P~ 32 (33)
T PF13174_consen 1 DALYRLARCYYKLGDYDEAIEYFQRLIKRYPD 32 (33)
T ss_dssp HHHHHHHHHHHHHCHHHHHHHHHHHHHHHSTT
T ss_pred CHHHHHHHHHHHccCHHHHHHHHHHHHHHCcC
Confidence 58999999999999999999999999999875
No 274
>KOG1308 consensus Hsp70-interacting protein Hip/Transient component of progesterone receptor complexes and an Hsp70-binding protein [Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=97.11 E-value=0.00081 Score=65.54 Aligned_cols=87 Identities=18% Similarity=0.176 Sum_probs=46.7
Q ss_pred HcCChHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHcCCHHHHHHHH
Q 003563 79 ALGNHKSAFDFYVIAAHLSPKDSALWKQLLTFAVQKGDTAQAMYYIRQAIRAEPKDISLRIHLASFYVEIGDYEKAAESY 158 (810)
Q Consensus 79 ~~g~~~~A~~~~~~a~~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~ 158 (810)
..|.+++|++.|..++.++|.....+...+.++..+++...|+.-+..+++++|+....+-..+.....+|++++|...+
T Consensus 126 n~G~~~~ai~~~t~ai~lnp~~a~l~~kr~sv~lkl~kp~~airD~d~A~ein~Dsa~~ykfrg~A~rllg~~e~aa~dl 205 (377)
T KOG1308|consen 126 NDGEFDTAIELFTSAIELNPPLAILYAKRASVFLKLKKPNAAIRDCDFAIEINPDSAKGYKFRGYAERLLGNWEEAAHDL 205 (377)
T ss_pred cCcchhhhhcccccccccCCchhhhcccccceeeeccCCchhhhhhhhhhccCcccccccchhhHHHHHhhchHHHHHHH
Confidence 34455555555555555555555555555555555555555555555555555555555555555555555555555555
Q ss_pred HHHHHhC
Q 003563 159 EQIQKLF 165 (810)
Q Consensus 159 ~~~l~~~ 165 (810)
..+.+++
T Consensus 206 ~~a~kld 212 (377)
T KOG1308|consen 206 ALACKLD 212 (377)
T ss_pred HHHHhcc
Confidence 5555543
No 275
>PF02259 FAT: FAT domain; InterPro: IPR003151 The FAT domain is a domain present in the PIK-related kinases. Members of the family of PIK-related kinases may act as intracellular sensors that govern radial and horizontal pathways [].; GO: 0005515 protein binding
Probab=97.11 E-value=0.06 Score=56.77 Aligned_cols=278 Identities=12% Similarity=0.031 Sum_probs=145.3
Q ss_pred HHHHHHHcCChHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC--------CCCHHHHHHHHHH
Q 003563 73 LGLAHSALGNHKSAFDFYVIAAHLSPKDSALWKQLLTFAVQKGDTAQAMYYIRQAIRAE--------PKDISLRIHLASF 144 (810)
Q Consensus 73 l~~~~~~~g~~~~A~~~~~~a~~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~--------p~~~~~~~~la~~ 144 (810)
.+.+..++|+++.-.+..... ..+.++..+..+......|+++++..+.+++...- +......+..-.-
T Consensus 4 ~~eaaWrl~~Wd~l~~~~~~~---~~~~~~~~~~~al~~l~~~~~~~~~~~i~~~r~~~~~~l~~~~~~s~~~~y~~l~~ 80 (352)
T PF02259_consen 4 AAEAAWRLGDWDLLEEYLSQS---NEDSPEYSFYRALLALRQGDYDEAKKYIEKARQLLLDELSALSSESYQRAYPSLVK 80 (352)
T ss_pred HHHHHHhcCChhhHHHHHhhc---cCCChhHHHHHHHHHHhCccHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHH
Confidence 356778899999833333322 22334566666666778999999999988887632 1111111222222
Q ss_pred HHHcCCHHHHHHHHHHHHHhCCCC----HHHHHHHHHHHHHcCChHHH--HHHHHHHHhh--CCCCCChHHHHHHHHHHH
Q 003563 145 YVEIGDYEKAAESYEQIQKLFPDN----VDATKTGAQLFLKCGQTARS--IGILEEYLKV--HPSDADLSVIDLLVAILM 216 (810)
Q Consensus 145 ~~~~g~~~~A~~~~~~~l~~~p~~----~~~~~~la~~~~~~g~~~~A--~~~~~~~l~~--~p~~~~~~~~~~la~~~~ 216 (810)
+....+.+++.++....... +.. ...|...-. ....+++.= +-.++..+-. .........+..++.+..
T Consensus 81 lq~L~Elee~~~~~~~~~~~-~~~~~~l~~~W~~Rl~--~~~~~~~~~~~il~~R~~~l~~~~~~~~~~~~~l~~a~~aR 157 (352)
T PF02259_consen 81 LQQLVELEEIIELKSNLSQN-PQDLKSLLKRWRSRLP--NMQDDFSVWEPILSLRRLVLSLILLPEELAETWLKFAKLAR 157 (352)
T ss_pred HhHHHHHHHHHHHHHhhccc-HHHHHHHHHHHHHHHH--HhccchHHHHHHHHHHHHHHhcccchhHHHHHHHHHHHHHH
Confidence 22333334444333211100 000 011111100 001111110 0011111110 111122246778888888
Q ss_pred HcCCHHHHHHHHHHHHHHhcCCCCCcHHHHHHHHHHHHhcCCHHHHHHHHHHhhccCCchhH--hHHHHHHHHHHHcCCc
Q 003563 217 ENNAYEKTLQHIEHAQIVRFSGKELPLKLKVKAGICYLRLGNMEKAEILFADLQWKNAIDHA--DLITEVADTLMSLGHS 294 (810)
Q Consensus 217 ~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~--~~~~~la~~~~~~~~~ 294 (810)
..|.++.|...+.++....+......+.+.+..+.+....|+..+|+..++..+........ .....+...... ..
T Consensus 158 k~g~~~~A~~~l~~~~~~~~~~~~~~~~v~~e~akllw~~g~~~~Ai~~L~~~~~~~~~~~~~~~~~~~~~~~~~~--~~ 235 (352)
T PF02259_consen 158 KAGNFQLALSALNRLFQLNPSSESLLPRVFLEYAKLLWAQGEQEEAIQKLRELLKCRLSKNIDSISNAELKSGLLE--SL 235 (352)
T ss_pred HCCCcHHHHHHHHHHhccCCcccCCCcchHHHHHHHHHHcCCHHHHHHHHHHHHHHHhhhccccccHHHHhhcccc--cc
Confidence 88888888888888776533333335677777888888888888888888877652211110 000011000000 00
Q ss_pred HHHHHHHHHHHhccCCCCHHHHHHHHHHHHHc------cCHHHHHHHHHHHHhhcCCCHHHHHHHHHHHHHc
Q 003563 295 NSALKYYHFLETNAGTDNGYLYLKLAECYLSL------KERAHAIMFFYKALDRFEDNIDARLTLASLLLEE 360 (810)
Q Consensus 295 ~~A~~~~~~~~~~~~~~~~~~~~~la~~~~~~------g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~ 360 (810)
+.....- ...........++..+|...... +..+++...|.++++.+|+...++..+|..+...
T Consensus 236 ~~~~~~~--~~~~~~~~~a~~~l~~a~w~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~k~~~~~a~~~~~~ 305 (352)
T PF02259_consen 236 EVISSTN--LDKESKELKAKAFLLLAKWLDELYSKLSSESSDEILKYYKEATKLDPSWEKAWHSWALFNDKL 305 (352)
T ss_pred ccccccc--hhhhhHHHHHHHHHHHHHHHHhhccccccccHHHHHHHHHHHHHhChhHHHHHHHHHHHHHHH
Confidence 0000000 00000112345677778777777 8899999999999999999999999999888654
No 276
>COG4649 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=97.04 E-value=0.092 Score=46.26 Aligned_cols=124 Identities=6% Similarity=-0.014 Sum_probs=50.7
Q ss_pred cCChHHHHHHHHHHHhhCCCCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhcCCCCCcHHHHHHHHHHHHhcCCHHH
Q 003563 182 CGQTARSIGILEEYLKVHPSDADLSVIDLLVAILMENNAYEKTLQHIEHAQIVRFSGKELPLKLKVKAGICYLRLGNMEK 261 (810)
Q Consensus 182 ~g~~~~A~~~~~~~l~~~p~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~ 261 (810)
.+..++|+..|..+-+..-.....-+....+.+....|+...|+..|..+-...+.+......++..-+.++...|.|++
T Consensus 71 ~~k~d~Alaaf~~lektg~g~YpvLA~mr~at~~a~kgdta~AV~aFdeia~dt~~P~~~rd~ARlraa~lLvD~gsy~d 150 (221)
T COG4649 71 ENKTDDALAAFTDLEKTGYGSYPVLARMRAATLLAQKGDTAAAVAAFDEIAADTSIPQIGRDLARLRAAYLLVDNGSYDD 150 (221)
T ss_pred cCCchHHHHHHHHHHhcCCCcchHHHHHHHHHHHhhcccHHHHHHHHHHHhccCCCcchhhHHHHHHHHHHHhccccHHH
Confidence 34444444444444333222222223334444445555555555555544333111111112233444444444454444
Q ss_pred HHHHHHHhhccCCchhHhHHHHHHHHHHHcCCcHHHHHHHHHHH
Q 003563 262 AEILFADLQWKNAIDHADLITEVADTLMSLGHSNSALKYYHFLE 305 (810)
Q Consensus 262 A~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~ 305 (810)
.....+.+-....+-...+.-.||..-.+.|++.+|...|..+.
T Consensus 151 V~srvepLa~d~n~mR~sArEALglAa~kagd~a~A~~~F~qia 194 (221)
T COG4649 151 VSSRVEPLAGDGNPMRHSAREALGLAAYKAGDFAKAKSWFVQIA 194 (221)
T ss_pred HHHHhhhccCCCChhHHHHHHHHhHHHHhccchHHHHHHHHHHH
Confidence 44444443222222233334444444444455555555444443
No 277
>PF08631 SPO22: Meiosis protein SPO22/ZIP4 like; InterPro: IPR013940 SPO22 is a meiosis-specific protein with similarity to phospholipase A2, involved in completion of nuclear divisions during meiosis; induced early in meiosis []. It is also involved in sporulation [].
Probab=97.03 E-value=0.45 Score=47.89 Aligned_cols=124 Identities=10% Similarity=0.095 Sum_probs=93.6
Q ss_pred HHHcCCHHHHHHHHHHHHHhC----CCC----hHHHHHHHHHHHHcC-ChHHHHHHHHHHHhc----CC---CC------
Q 003563 43 QYAYGNFEQAISLLKEVVRLS----PNL----PETYNTLGLAHSALG-NHKSAFDFYVIAAHL----SP---KD------ 100 (810)
Q Consensus 43 ~~~~g~~~~A~~~~~~~l~~~----p~~----~~~~~~l~~~~~~~g-~~~~A~~~~~~a~~~----~p---~~------ 100 (810)
....|+++.|..++.++-... |+. ...++..|......+ +++.|..+++++.++ .+ ..
T Consensus 3 A~~~~~~~~A~~~~~K~~~~~~~~~~~~~~~La~~~yn~G~~l~~~~~~~~~a~~wL~~a~~~l~~~~~~~~~~~~~~el 82 (278)
T PF08631_consen 3 AWKQGDLDLAEHMYSKAKDLLNSLDPDMAEELARVCYNIGKSLLSKKDKYEEAVKWLQRAYDILEKPGKMDKLSPDGSEL 82 (278)
T ss_pred chhhCCHHHHHHHHHHhhhHHhcCCcHHHHHHHHHHHHHHHHHHHcCCChHHHHHHHHHHHHHHHhhhhccccCCcHHHH
Confidence 467899999999999986543 332 345778888888899 999999999999877 21 11
Q ss_pred -HHHHHHHHHHHHHcCCHH---HHHHHHHHHHHcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCC
Q 003563 101 -SALWKQLLTFAVQKGDTA---QAMYYIRQAIRAEPKDISLRIHLASFYVEIGDYEKAAESYEQIQKLFP 166 (810)
Q Consensus 101 -~~~~~~la~~~~~~g~~~---~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p 166 (810)
...+..++.++...+.++ +|....+.+-...|+.+..+...-.+....++.+.+.+.+.+++...+
T Consensus 83 r~~iL~~La~~~l~~~~~~~~~ka~~~l~~l~~e~~~~~~~~~L~l~il~~~~~~~~~~~~L~~mi~~~~ 152 (278)
T PF08631_consen 83 RLSILRLLANAYLEWDTYESVEKALNALRLLESEYGNKPEVFLLKLEILLKSFDEEEYEEILMRMIRSVD 152 (278)
T ss_pred HHHHHHHHHHHHHcCCChHHHHHHHHHHHHHHHhCCCCcHHHHHHHHHHhccCChhHHHHHHHHHHHhcc
Confidence 134667888998887765 455555566666788888876666777778999999999999988754
No 278
>PF08424 NRDE-2: NRDE-2, necessary for RNA interference; InterPro: IPR013633 This is domain is found in eukaryotic proteins of unknown function.
Probab=96.94 E-value=0.08 Score=54.42 Aligned_cols=159 Identities=16% Similarity=0.098 Sum_probs=79.2
Q ss_pred HHHHHHHHhCCCChHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCC
Q 003563 54 SLLKEVVRLSPNLPETYNTLGLAHSALGNHKSAFDFYVIAAHLSPKDSALWKQLLTFAVQKGDTAQAMYYIRQAIRAEPK 133 (810)
Q Consensus 54 ~~~~~~l~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~ 133 (810)
..|++.++.+|.+.++|..+.......-...... .-....-.+.-+..|++|++.+|+
T Consensus 6 ~el~~~v~~~P~di~~Wl~li~~Qd~~~~~~~~~----------------------~~~~~a~~E~klsilerAL~~np~ 63 (321)
T PF08424_consen 6 AELNRRVRENPHDIEAWLELIEFQDELFRLQSSS----------------------KAERRALAERKLSILERALKHNPD 63 (321)
T ss_pred HHHHHHHHhCcccHHHHHHHHHHHHHhccccccc----------------------hhhHHHHHHHHHHHHHHHHHhCCC
Confidence 3466667777777777777766544332210000 000000123344455555555555
Q ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHH---cCChHHHHHHHHHHHhhCC----------
Q 003563 134 DISLRIHLASFYVEIGDYEKAAESYEQIQKLFPDNVDATKTGAQLFLK---CGQTARSIGILEEYLKVHP---------- 200 (810)
Q Consensus 134 ~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~---~g~~~~A~~~~~~~l~~~p---------- 200 (810)
+...+..+-.+..+..+.++..+-+++++..+|+++..|...-..... .-.++.....|.+++..-.
T Consensus 64 ~~~L~l~~l~~~~~~~~~~~l~~~we~~l~~~~~~~~LW~~yL~~~q~~~~~f~v~~~~~~y~~~l~~L~~~~~~~~~~~ 143 (321)
T PF08424_consen 64 SERLLLGYLEEGEKVWDSEKLAKKWEELLFKNPGSPELWREYLDFRQSNFASFTVSDVRDVYEKCLRALSRRRSGRMTSH 143 (321)
T ss_pred CHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHCCCChHHHHHHHHHHHHHhccCcHHHHHHHHHHHHHHHHHhhccccccc
Confidence 555555555555555555555555555555555555554443333222 1234444444444443210
Q ss_pred -CCCC-----hHHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Q 003563 201 -SDAD-----LSVIDLLVAILMENNAYEKTLQHIEHAQIV 234 (810)
Q Consensus 201 -~~~~-----~~~~~~la~~~~~~g~~~~A~~~~~~~~~~ 234 (810)
.... ..++..+.......|..+.|+..++-.++.
T Consensus 144 ~~~~~~e~~~l~v~~r~~~fl~~aG~~E~Ava~~Qa~lE~ 183 (321)
T PF08424_consen 144 PDLPELEEFMLYVFLRLCRFLRQAGYTERAVALWQALLEF 183 (321)
T ss_pred cchhhHHHHHHHHHHHHHHHHHHCCchHHHHHHHHHHHHH
Confidence 0000 134556667777778888888888777776
No 279
>KOG2396 consensus HAT (Half-A-TPR) repeat-containing protein [General function prediction only]
Probab=96.94 E-value=0.65 Score=48.43 Aligned_cols=65 Identities=14% Similarity=0.262 Sum_probs=37.8
Q ss_pred HHHcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHcCC-hHHHHHHHHHHHhcCCCCHHHHHHH
Q 003563 43 QYAYGNFEQAISLLKEVVRLSPNLPETYNTLGLAHSALGN-HKSAFDFYVIAAHLSPKDSALWKQL 107 (810)
Q Consensus 43 ~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~l~~~~~~~g~-~~~A~~~~~~a~~~~p~~~~~~~~l 107 (810)
..+.+.+.+--.+|.+++..+|++++.|..-|.-.+..+. .+.|...|.+++..+|+++..|...
T Consensus 115 ~kk~~~~~~v~ki~~~~l~~Hp~~~dLWI~aA~wefe~n~ni~saRalflrgLR~npdsp~Lw~ey 180 (568)
T KOG2396|consen 115 CKKKKTYGEVKKIFAAMLAKHPNNPDLWIYAAKWEFEINLNIESARALFLRGLRFNPDSPKLWKEY 180 (568)
T ss_pred HHHhcchhHHHHHHHHHHHhCCCCchhHHhhhhhHHhhccchHHHHHHHHHHhhcCCCChHHHHHH
Confidence 3334445556666666666666666666666555555444 5566666666666666666655543
No 280
>COG2976 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=96.94 E-value=0.044 Score=49.48 Aligned_cols=97 Identities=14% Similarity=0.097 Sum_probs=52.7
Q ss_pred HHHHHHHhcCCHHHHHHHHHHhhccCCch--hHhHHHHHHHHHHHcCCcHHHHHHHHHHHhccCCCCHHHHHHHHHHHHH
Q 003563 248 KAGICYLRLGNMEKAEILFADLQWKNAID--HADLITEVADTLMSLGHSNSALKYYHFLETNAGTDNGYLYLKLAECYLS 325 (810)
Q Consensus 248 ~la~~~~~~g~~~~A~~~~~~~~~~~~~~--~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~la~~~~~ 325 (810)
.++..+...|++++|+..++.++...... ..-+-..++.+....|.+++|+..++.... +.-.+......|+++..
T Consensus 94 ~lAk~~ve~~~~d~A~aqL~~~l~~t~De~lk~l~~lRLArvq~q~~k~D~AL~~L~t~~~--~~w~~~~~elrGDill~ 171 (207)
T COG2976 94 ELAKAEVEANNLDKAEAQLKQALAQTKDENLKALAALRLARVQLQQKKADAALKTLDTIKE--ESWAAIVAELRGDILLA 171 (207)
T ss_pred HHHHHHHhhccHHHHHHHHHHHHccchhHHHHHHHHHHHHHHHHHhhhHHHHHHHHhcccc--ccHHHHHHHHhhhHHHH
Confidence 34445555555555555555544322111 223345666666666666666666654331 11233344556777777
Q ss_pred ccCHHHHHHHHHHHHhhcCCC
Q 003563 326 LKERAHAIMFFYKALDRFEDN 346 (810)
Q Consensus 326 ~g~~~~A~~~~~~al~~~p~~ 346 (810)
.|+.++|+..|+++++.+++.
T Consensus 172 kg~k~~Ar~ay~kAl~~~~s~ 192 (207)
T COG2976 172 KGDKQEARAAYEKALESDASP 192 (207)
T ss_pred cCchHHHHHHHHHHHHccCCh
Confidence 777777777777777665433
No 281
>PF08424 NRDE-2: NRDE-2, necessary for RNA interference; InterPro: IPR013633 This is domain is found in eukaryotic proteins of unknown function.
Probab=96.84 E-value=0.093 Score=53.95 Aligned_cols=134 Identities=11% Similarity=-0.041 Sum_probs=93.9
Q ss_pred HHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHhhCCCCCChHHHHHHHHHHHH---cCCHHHHHHH
Q 003563 151 YEKAAESYEQIQKLFPDNVDATKTGAQLFLKCGQTARSIGILEEYLKVHPSDADLSVIDLLVAILME---NNAYEKTLQH 227 (810)
Q Consensus 151 ~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~~~la~~~~~---~g~~~~A~~~ 227 (810)
.+.-+.+|++|++.+|++...+..+-.+..+..+.++..+.+++++..+|++.. +|..+...... .-.++.....
T Consensus 47 ~E~klsilerAL~~np~~~~L~l~~l~~~~~~~~~~~l~~~we~~l~~~~~~~~--LW~~yL~~~q~~~~~f~v~~~~~~ 124 (321)
T PF08424_consen 47 AERKLSILERALKHNPDSERLLLGYLEEGEKVWDSEKLAKKWEELLFKNPGSPE--LWREYLDFRQSNFASFTVSDVRDV 124 (321)
T ss_pred HHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHCCCChH--HHHHHHHHHHHHhccCcHHHHHHH
Confidence 466788999999999999999999999999999999999999999999998765 55444433322 3467788888
Q ss_pred HHHHHHHhcCCCCCcHHHHHHHHHHHHhcCCHHHHHHHHHHhhccCCchhHhHHHHHHHHHHHcCCcHHHHHHHHHHHhc
Q 003563 228 IEHAQIVRFSGKELPLKLKVKAGICYLRLGNMEKAEILFADLQWKNAIDHADLITEVADTLMSLGHSNSALKYYHFLETN 307 (810)
Q Consensus 228 ~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~ 307 (810)
|.+++.......... .........+ ......++..+...+.+.|..+.|+..++.+++.
T Consensus 125 y~~~l~~L~~~~~~~--------------~~~~~~~~~~-------e~~~l~v~~r~~~fl~~aG~~E~Ava~~Qa~lE~ 183 (321)
T PF08424_consen 125 YEKCLRALSRRRSGR--------------MTSHPDLPEL-------EEFMLYVFLRLCRFLRQAGYTERAVALWQALLEF 183 (321)
T ss_pred HHHHHHHHHHhhccc--------------cccccchhhH-------HHHHHHHHHHHHHHHHHCCchHHHHHHHHHHHHH
Confidence 888877632111100 0000000000 0124556777888889999999999999988876
No 282
>KOG0530 consensus Protein farnesyltransferase, alpha subunit/protein geranylgeranyltransferase type I, alpha subunit [Posttranslational modification, protein turnover, chaperones]
Probab=96.82 E-value=0.4 Score=45.51 Aligned_cols=186 Identities=11% Similarity=0.118 Sum_probs=130.8
Q ss_pred cCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHc-CCHHHHHHHH
Q 003563 46 YGNFEQAISLLKEVVRLSPNLPETYNTLGLAHSALGNHKSAFDFYVIAAHLSPKDSALWKQLLTFAVQK-GDTAQAMYYI 124 (810)
Q Consensus 46 ~g~~~~A~~~~~~~l~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~p~~~~~~~~la~~~~~~-g~~~~A~~~~ 124 (810)
..+|.++..+|+.++..+. .-..|+..-..++.++|.+-.+|...-.++..+ .+..+-+.++
T Consensus 39 te~fr~~m~YfRAI~~~~E-----------------~S~RAl~LT~d~i~lNpAnYTVW~yRr~iL~~l~~dL~~El~~l 101 (318)
T KOG0530|consen 39 TEDFRDVMDYFRAIIAKNE-----------------KSPRALQLTEDAIRLNPANYTVWQYRRVILRHLMSDLNKELEYL 101 (318)
T ss_pred chhHHHHHHHHHHHHhccc-----------------cCHHHHHHHHHHHHhCcccchHHHHHHHHHHHhHHHHHHHHHHH
Confidence 3456666666666655544 344566667777889999988888776666655 4677888899
Q ss_pred HHHHHcCCCCHHHHHHHHHHHHHcCCHH-HHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHhhCCCCC
Q 003563 125 RQAIRAEPKDISLRIHLASFYVEIGDYE-KAAESYEQIQKLFPDNVDATKTGAQLFLKCGQTARSIGILEEYLKVHPSDA 203 (810)
Q Consensus 125 ~~al~~~p~~~~~~~~la~~~~~~g~~~-~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~ 203 (810)
...++-+|++-.+|...-.+....|++. .-++..+.++..+..+-.+|...-.+....+.++.-+.+...+++.+-.+.
T Consensus 102 ~eI~e~npKNYQvWHHRr~ive~l~d~s~rELef~~~~l~~DaKNYHaWshRqW~~r~F~~~~~EL~y~~~Lle~Di~NN 181 (318)
T KOG0530|consen 102 DEIIEDNPKNYQVWHHRRVIVELLGDPSFRELEFTKLMLDDDAKNYHAWSHRQWVLRFFKDYEDELAYADELLEEDIRNN 181 (318)
T ss_pred HHHHHhCccchhHHHHHHHHHHHhcCcccchHHHHHHHHhccccchhhhHHHHHHHHHHhhHHHHHHHHHHHHHHhhhcc
Confidence 9999999999999999989999999888 888899999998888888998888888888899999999999988775554
Q ss_pred ChHHHHHHHHHHHH-cC-----CHHHHHHHHHHHHHHhcCCCCCcHHHHHHHHHHHH
Q 003563 204 DLSVIDLLVAILME-NN-----AYEKTLQHIEHAQIVRFSGKELPLKLKVKAGICYL 254 (810)
Q Consensus 204 ~~~~~~~la~~~~~-~g-----~~~~A~~~~~~~~~~~~~~~~~~~~~~~~la~~~~ 254 (810)
. +|+..--+... .| ..+.-+.+..+.+.. .|.+..++..+.-++.
T Consensus 182 S--AWN~Ryfvi~~~~~~~~~~~le~El~yt~~~I~~----vP~NeSaWnYL~G~l~ 232 (318)
T KOG0530|consen 182 S--AWNQRYFVITNTKGVISKAELERELNYTKDKILL----VPNNESAWNYLKGLLE 232 (318)
T ss_pred c--hhheeeEEEEeccCCccHHHHHHHHHHHHHHHHh----CCCCccHHHHHHHHHH
Confidence 3 34332111111 11 123334455555555 3455555555544444
No 283
>PF13181 TPR_8: Tetratricopeptide repeat; PDB: 3GW4_B 3MA5_C 2KCV_A 2KCL_A 3FP3_A 3LCA_A 3FP4_A 3FP2_A 1W3B_B 1ELW_A ....
Probab=96.82 E-value=0.0027 Score=40.08 Aligned_cols=33 Identities=33% Similarity=0.469 Sum_probs=28.7
Q ss_pred HHHHHHHHHHHHccCHHHHHHHHHHHHhhcCCC
Q 003563 314 YLYLKLAECYLSLKERAHAIMFFYKALDRFEDN 346 (810)
Q Consensus 314 ~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~ 346 (810)
.+|+.+|.++..+|++++|..+|+++++++|++
T Consensus 2 ~~~~~lg~~y~~~~~~~~A~~~~~~a~~~~~~n 34 (34)
T PF13181_consen 2 EAYYNLGKIYEQLGDYEEALEYFEKALELNPDN 34 (34)
T ss_dssp HHHHHHHHHHHHTTSHHHHHHHHHHHHHHHTT-
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCC
Confidence 578889999999999999999999999998853
No 284
>PRK13184 pknD serine/threonine-protein kinase; Reviewed
Probab=96.78 E-value=1.7 Score=50.80 Aligned_cols=370 Identities=11% Similarity=0.049 Sum_probs=210.9
Q ss_pred HHHHHcCCHHHHHHHHHHHHHhCCCC---hHHHHHHHHHHHH----cC---ChHHHHHHHHHHHhcCCCCHHHHHHHHHH
Q 003563 41 SLQYAYGNFEQAISLLKEVVRLSPNL---PETYNTLGLAHSA----LG---NHKSAFDFYVIAAHLSPKDSALWKQLLTF 110 (810)
Q Consensus 41 ~~~~~~g~~~~A~~~~~~~l~~~p~~---~~~~~~l~~~~~~----~g---~~~~A~~~~~~a~~~~p~~~~~~~~la~~ 110 (810)
.++.....|+.|+..|+++-...|.. -++.+..|..... .| .+++|+..|++. .-.|.-|--|...|.+
T Consensus 483 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~ 561 (932)
T PRK13184 483 DAFLAEKLYDQALIFYRRIRESFPGRKEGYEAQFRLGITLLEKASEQGDPRDFTQALSEFSYL-HGGVGAPLEYLGKALV 561 (932)
T ss_pred HHHHhhHHHHHHHHHHHHHhhcCCCcccchHHHHHhhHHHHHHHHhcCChHHHHHHHHHHHHh-cCCCCCchHHHhHHHH
Confidence 45677888999999999999999875 4577888877764 23 477888888774 4467777778899999
Q ss_pred HHHcCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHc-----CCHHHHHHHHHHHHHhCCCCHHHHH---HHHH-----
Q 003563 111 AVQKGDTAQAMYYIRQAIRAEPKDISLRIHLASFYVEI-----GDYEKAAESYEQIQKLFPDNVDATK---TGAQ----- 177 (810)
Q Consensus 111 ~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~-----g~~~~A~~~~~~~l~~~p~~~~~~~---~la~----- 177 (810)
|.++|++++-+++|.-+++..|+.|..-...-.+-.++ .+-..|....--++...|....... .+-.
T Consensus 562 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 641 (932)
T PRK13184 562 YQRLGEYNEEIKSLLLALKRYSQHPEISRLRDHLVYRLHESLYKHRREALVFMLLALWIAPEKISSREEEKFLEILYHKQ 641 (932)
T ss_pred HHHhhhHHHHHHHHHHHHHhcCCCCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCcccccchHHHHHHHHHHhhc
Confidence 99999999999999999999998876533322222221 1223444444445555554321100 0000
Q ss_pred -----------------------HHHHcCChHHHHHHHHHHHhhCCCCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Q 003563 178 -----------------------LFLKCGQTARSIGILEEYLKVHPSDADLSVIDLLVAILMENNAYEKTLQHIEHAQIV 234 (810)
Q Consensus 178 -----------------------~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~ 234 (810)
+-+-.|..---.+.++++....|- .++...-.+...+|.++-+.+......+.
T Consensus 642 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 717 (932)
T PRK13184 642 QATLFCQLDKTPLQFRSSKMELFLSFWSGFTPFLPELFQRAWDLRDY----RALADIFYVACDLGNWEFFSQFSDILAEV 717 (932)
T ss_pred cCCceeeccCchhhhhhhhHHHHHHHHhcCchhhHHHHHHHhhcccH----HHHHHHHHHHHHhccHHHHHHHHHHHHHH
Confidence 011122222223344444443322 34455555667888888776665554432
Q ss_pred hcCCCCCcHHH----------HHHHHHHHHhcCCHHHHHHHHHHhhccCCchhHhHHHHHHHHHHHcCCcHHHHHHHHHH
Q 003563 235 RFSGKELPLKL----------KVKAGICYLRLGNMEKAEILFADLQWKNAIDHADLITEVADTLMSLGHSNSALKYYHFL 304 (810)
Q Consensus 235 ~~~~~~~~~~~----------~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~ 304 (810)
... ...+..+ +..-..+......++++...+..+ .+.....++...+.-....++.+.-....+.+
T Consensus 718 ~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 793 (932)
T PRK13184 718 SDE-ITFTESIVEQKVEELMFFLKGLEALSNKEDYEKAFKHLDNT---DPTLILYAFDLFAIQALLDEEGESIIQLLQLI 793 (932)
T ss_pred hhh-ccchHHHHhhhHHHHHHHHHHHHHHHccccHHHHHhhhhhC---CHHHHHHHHHHHHHHHHHhccchHHHHHHHHH
Confidence 110 1111111 222233444555777777655554 12111122222233333334433333333333
Q ss_pred HhccCCC--CHHHHHHHHHHHHHccCHHHHHHHHHHHHh--hcCCCHHHHHHHHHHHHHcCCHHHHHHhcCCCCCC--Cc
Q 003563 305 ETNAGTD--NGYLYLKLAECYLSLKERAHAIMFFYKALD--RFEDNIDARLTLASLLLEEAKEEEAITLLSPPKDL--DS 378 (810)
Q Consensus 305 ~~~~~~~--~~~~~~~la~~~~~~g~~~~A~~~~~~al~--~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~--~~ 378 (810)
.....+. ..........+|.-..++++|-+.+...-. ...+...+....|.-+.-.++-+-|...|....+. .|
T Consensus 794 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 873 (932)
T PRK13184 794 YDYVSEEERHDHLLVYEIQAHLWNRDLKKAYKLLNRYPLDLLLDEYSEAFVLYGCYLALTEDREAAKAHFSGCREDALFP 873 (932)
T ss_pred HhccCChhhhhhhhHHHHHHHHHhccHHHHHHHHHhCChhhhccccchHHHHHHHHHHhcCchhHHHHHHhhccccccCc
Confidence 3221122 233445556677788899999888743221 12345677777887788888888888888766622 12
Q ss_pred ccCC---------CCCCChhhhHHHHHHHHHHHHHhcCCchhHHhhhhhhh
Q 003563 379 LDMN---------SDKSNPWWLNEKIIMKLCHIYRAKGMPEDFVDAIFPLV 420 (810)
Q Consensus 379 ~~~~---------~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~l 420 (810)
..-. .....+||.....+..+...+.-.|+.++- ..++.+.
T Consensus 874 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~ 923 (932)
T PRK13184 874 RSLDGDIFDYLGKISDNLSWWEKKQLLRQKFLYFHCLGDSEER-DKYRQAY 923 (932)
T ss_pred chhhccccchhccccccccHHHHHHHHHHHHHHHHHhCChhHh-HHHHHHH
Confidence 1111 023446787777888888777778877766 4444443
No 285
>KOG0890 consensus Protein kinase of the PI-3 kinase family involved in mitotic growth, DNA repair and meiotic recombination [Signal transduction mechanisms; Chromatin structure and dynamics; Replication, recombination and repair; Cell cycle control, cell division, chromosome partitioning]
Probab=96.76 E-value=1 Score=56.13 Aligned_cols=134 Identities=11% Similarity=0.057 Sum_probs=94.6
Q ss_pred HHHHHHHHHHHHHHh---cCCCCCcHHHHHHHHHHHHhcCCHHHHHHHHHHhhccCCchhHhHHHHHHHHHHHcCCcHHH
Q 003563 221 YEKTLQHIEHAQIVR---FSGKELPLKLKVKAGICYLRLGNMEKAEILFADLQWKNAIDHADLITEVADTLMSLGHSNSA 297 (810)
Q Consensus 221 ~~~A~~~~~~~~~~~---~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A 297 (810)
..+-+-.++++.-.. +.-.....+.|...|.+....|+++.|...+-.+.+.. .+.+....|..+...|+...|
T Consensus 1645 ~~epILa~RRs~l~~~~~~~~~~~~ge~wLqsAriaR~aG~~q~A~nall~A~e~r---~~~i~~E~AK~lW~~gd~~~A 1721 (2382)
T KOG0890|consen 1645 IKEPILAFRRSMLDLRMRSNLKSRLGECWLQSARIARLAGHLQRAQNALLNAKESR---LPEIVLERAKLLWQTGDELNA 1721 (2382)
T ss_pred HHhHHHHHHHHHHHHhccccccchhHHHHHHHHHHHHhcccHHHHHHHHHhhhhcc---cchHHHHHHHHHHhhccHHHH
Confidence 444444455544332 12244556889999999999999999999988886554 567889999999999999999
Q ss_pred HHHHHHHHhccCCC----------------CHHHHHHHHHHHHHccCH--HHHHHHHHHHHhhcCCCHHHHHHHHHHH
Q 003563 298 LKYYHFLETNAGTD----------------NGYLYLKLAECYLSLKER--AHAIMFFYKALDRFEDNIDARLTLASLL 357 (810)
Q Consensus 298 ~~~~~~~~~~~~~~----------------~~~~~~~la~~~~~~g~~--~~A~~~~~~al~~~p~~~~~~~~la~~~ 357 (810)
+..++..+....|+ ...+.+.++......|++ .+-++.|..+.+..|...+.++.+|..|
T Consensus 1722 l~~Lq~~l~~~~~~~~~~~~~~p~~~n~~i~~~~~L~~~~~~~es~n~~s~~ilk~Y~~~~ail~ewe~~hy~l~~yy 1799 (2382)
T KOG0890|consen 1722 LSVLQEILSKNFPDLHTPYTDTPQSVNLLIFKKAKLKITKYLEESGNFESKDILKYYHDAKAILPEWEDKHYHLGKYY 1799 (2382)
T ss_pred HHHHHHHHHhhcccccCCccccchhhhhhhhhhHHHHHHHHHHHhcchhHHHHHHHHHHHHHHcccccCceeeHHHHH
Confidence 99999988653333 112344555555566663 3566889999999997766676666444
No 286
>COG4649 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=96.66 E-value=0.2 Score=44.29 Aligned_cols=141 Identities=13% Similarity=0.090 Sum_probs=103.7
Q ss_pred HHHcCCHHHHHHHHHHHHHHhcCCCCCcHHHHHHHHHHHHhcCCHHHHHHHHHHhhccCCchh---HhHHHHHHHHHHHc
Q 003563 215 LMENNAYEKTLQHIEHAQIVRFSGKELPLKLKVKAGICYLRLGNMEKAEILFADLQWKNAIDH---ADLITEVADTLMSL 291 (810)
Q Consensus 215 ~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~---~~~~~~la~~~~~~ 291 (810)
+...+..++|+..|....+. .....+.-+.+..+.+....|+...|+..|..+-...+... .-+...-+.++...
T Consensus 68 lA~~~k~d~Alaaf~~lekt--g~g~YpvLA~mr~at~~a~kgdta~AV~aFdeia~dt~~P~~~rd~ARlraa~lLvD~ 145 (221)
T COG4649 68 LAQENKTDDALAAFTDLEKT--GYGSYPVLARMRAATLLAQKGDTAAAVAAFDEIAADTSIPQIGRDLARLRAAYLLVDN 145 (221)
T ss_pred HHHcCCchHHHHHHHHHHhc--CCCcchHHHHHHHHHHHhhcccHHHHHHHHHHHhccCCCcchhhHHHHHHHHHHHhcc
Confidence 34567788888888876554 12345667788899999999999999999999755433111 22455667888999
Q ss_pred CCcHHHHHHHHHHHhccCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHhhcCCCHHHHHHHHHHHH
Q 003563 292 GHSNSALKYYHFLETNAGTDNGYLYLKLAECYLSLKERAHAIMFFYKALDRFEDNIDARLTLASLLL 358 (810)
Q Consensus 292 ~~~~~A~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~ 358 (810)
|.|+.-....+.+.....|-...+.-.||..-.+.|++..|...|..+.. +...+....+.+.+..
T Consensus 146 gsy~dV~srvepLa~d~n~mR~sArEALglAa~kagd~a~A~~~F~qia~-Da~aprnirqRAq~ml 211 (221)
T COG4649 146 GSYDDVSSRVEPLAGDGNPMRHSAREALGLAAYKAGDFAKAKSWFVQIAN-DAQAPRNIRQRAQIML 211 (221)
T ss_pred ccHHHHHHHhhhccCCCChhHHHHHHHHhHHHHhccchHHHHHHHHHHHc-cccCcHHHHHHHHHHH
Confidence 99999888887776555566777888899999999999999999999876 4444555555555443
No 287
>PF04910 Tcf25: Transcriptional repressor TCF25; InterPro: IPR006994 This entry appears to represent a novel family of basic helix-loop-helix (bHLH) proteins that control differentiation and development of a variety of organs [, ]. Human Nulp1 (Q2MK75 from SWISSPROT) is a basic helix-loop-helix protein expressed broadly during early embryonic organogenesis. Over expression of human Nulp1 in COS-7 cells inhibits the transcriptional activity of serum response factor (SRF), suggesting that Nulp1 may act as a novel bHLH transcriptional repressor in the SRF signalling pathway to mediate cellular functions [].
Probab=96.62 E-value=0.11 Score=53.92 Aligned_cols=167 Identities=14% Similarity=0.014 Sum_probs=87.8
Q ss_pred HHHhCCCChHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCH---
Q 003563 59 VVRLSPNLPETYNTLGLAHSALGNHKSAFDFYVIAAHLSPKDSALWKQLLTFAVQKGDTAQAMYYIRQAIRAEPKDI--- 135 (810)
Q Consensus 59 ~l~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~--- 135 (810)
.++.+|-+.+++..++.++..+|+...|.+.+++|+-.........+..-..-...|.-. .--..+.|.
T Consensus 32 ll~~~PyHidtLlqls~v~~~~gd~~~A~~lleRALf~~e~~~~~~F~~~~~~~~~g~~r--------L~~~~~eNR~ff 103 (360)
T PF04910_consen 32 LLQKNPYHIDTLLQLSEVYRQQGDHAQANDLLERALFAFERAFHPSFSPFRSNLTSGNCR--------LDYRRPENRQFF 103 (360)
T ss_pred HHHHCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHHHHHhhhhhcccccCccc--------cCCccccchHHH
Confidence 346688888888888888888888888888888876321100000000000000000000 000011222
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC-CHHHH-HHHHHHHHHcCChHHHHHHHHHHHhhCCC-----CCChHHH
Q 003563 136 SLRIHLASFYVEIGDYEKAAESYEQIQKLFPD-NVDAT-KTGAQLFLKCGQTARSIGILEEYLKVHPS-----DADLSVI 208 (810)
Q Consensus 136 ~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~-~~~~~-~~la~~~~~~g~~~~A~~~~~~~l~~~p~-----~~~~~~~ 208 (810)
.+++.....+.+.|-+..|+++.+-++.++|. |+-.. ..+=....+.++++--+..++........ -+. ..
T Consensus 104 lal~r~i~~L~~RG~~rTAlE~~KlLlsLdp~~DP~g~ll~ID~~ALrs~~y~~Li~~~~~~~~~~~~~~~~~lPn--~a 181 (360)
T PF04910_consen 104 LALFRYIQSLGRRGCWRTALEWCKLLLSLDPDEDPLGVLLFIDYYALRSRQYQWLIDFSESPLAKCYRNWLSLLPN--FA 181 (360)
T ss_pred HHHHHHHHHHHhcCcHHHHHHHHHHHHhcCCCCCcchhHHHHHHHHHhcCCHHHHHHHHHhHhhhhhhhhhhhCcc--HH
Confidence 23445556666677777777777777777776 55332 23333334555665555555554331111 112 34
Q ss_pred HHHHHHHHHcCCH---------------HHHHHHHHHHHHHh
Q 003563 209 DLLVAILMENNAY---------------EKTLQHIEHAQIVR 235 (810)
Q Consensus 209 ~~la~~~~~~g~~---------------~~A~~~~~~~~~~~ 235 (810)
+..+.++...++- ++|...+.+++..+
T Consensus 182 ~S~aLA~~~l~~~~~~~~~~~~~~~~~~~~A~~~L~~Ai~~f 223 (360)
T PF04910_consen 182 FSIALAYFRLEKEESSQSSAQSGRSENSESADEALQKAILRF 223 (360)
T ss_pred HHHHHHHHHhcCccccccccccccccchhHHHHHHHHHHHHh
Confidence 4555666666665 77888888887774
No 288
>COG0790 FOG: TPR repeat, SEL1 subfamily [General function prediction only]
Probab=96.60 E-value=1 Score=45.87 Aligned_cols=167 Identities=17% Similarity=0.096 Sum_probs=101.2
Q ss_pred HHHHcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHH----cCChHHHHHHHHHHHhcCCCCHHHHHHHHHHHHH----
Q 003563 42 LQYAYGNFEQAISLLKEVVRLSPNLPETYNTLGLAHSA----LGNHKSAFDFYVIAAHLSPKDSALWKQLLTFAVQ---- 113 (810)
Q Consensus 42 ~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~l~~~~~~----~g~~~~A~~~~~~a~~~~p~~~~~~~~la~~~~~---- 113 (810)
.....+++..|...+..+-.. .++.+...++.+|.. ..+..+|..+|..+. ...++.+.+.+|.++..
T Consensus 50 ~~~~~~~~~~a~~~~~~a~~~--~~~~a~~~l~~~y~~g~gv~~~~~~A~~~~~~~a--~~g~~~a~~~lg~~~~~G~gv 125 (292)
T COG0790 50 GSAYPPDYAKALKSYEKAAEL--GDAAALALLGQMYGAGKGVSRDKTKAADWYRCAA--ADGLAEALFNLGLMYANGRGV 125 (292)
T ss_pred cccccccHHHHHHHHHHhhhc--CChHHHHHHHHHHHhccCccccHHHHHHHHHHHh--hcccHHHHHhHHHHHhcCCCc
Confidence 344566777777777776552 234667777777765 345667777777443 34566777777777776
Q ss_pred cCCHHHHHHHHHHHHHcCCCC-HHHHHHHHHHHHHcC-------CHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHH----
Q 003563 114 KGDTAQAMYYIRQAIRAEPKD-ISLRIHLASFYVEIG-------DYEKAAESYEQIQKLFPDNVDATKTGAQLFLK---- 181 (810)
Q Consensus 114 ~g~~~~A~~~~~~al~~~p~~-~~~~~~la~~~~~~g-------~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~---- 181 (810)
..+..+|..+|+++.+..-.. ..+...++.+|..-+ +...|...|.++.... ++.+...+|.+|..
T Consensus 126 ~~d~~~A~~~~~~Aa~~g~~~a~~~~~~l~~~~~~g~~~~~~~~~~~~A~~~~~~aa~~~--~~~a~~~lg~~y~~G~Gv 203 (292)
T COG0790 126 PLDLVKALKYYEKAAKLGNVEAALAMYRLGLAYLSGLQALAVAYDDKKALYLYRKAAELG--NPDAQLLLGRMYEKGLGV 203 (292)
T ss_pred ccCHHHHHHHHHHHHHcCChhHHHHHHHHHHHHHcChhhhcccHHHHhHHHHHHHHHHhc--CHHHHHHHHHHHHcCCCC
Confidence 347778888888877753222 233666666665531 2235666666666554 56666666666543
Q ss_pred cCChHHHHHHHHHHHhhCCCCCChHHHHHHHHHHHHcC
Q 003563 182 CGQTARSIGILEEYLKVHPSDADLSVIDLLVAILMENN 219 (810)
Q Consensus 182 ~g~~~~A~~~~~~~l~~~p~~~~~~~~~~la~~~~~~g 219 (810)
..++.+|...|.++.+... . ...+.++ ++...|
T Consensus 204 ~~d~~~A~~wy~~Aa~~g~--~--~a~~~~~-~~~~~g 236 (292)
T COG0790 204 PRDLKKAFRWYKKAAEQGD--G--AACYNLG-LMYLNG 236 (292)
T ss_pred CcCHHHHHHHHHHHHHCCC--H--HHHHHHH-HHHhcC
Confidence 2356677777777766554 1 2455555 444444
No 289
>COG5107 RNA14 Pre-mRNA 3'-end processing (cleavage and polyadenylation) factor [RNA processing and modification]
Probab=96.57 E-value=1.1 Score=45.98 Aligned_cols=215 Identities=13% Similarity=0.073 Sum_probs=138.5
Q ss_pred HHHHHHhCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHhhCCCCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhc-
Q 003563 158 YEQIQKLFPDNVDATKTGAQLFLKCGQTARSIGILEEYLKVHPSDADLSVIDLLVAILMENNAYEKTLQHIEHAQIVRF- 236 (810)
Q Consensus 158 ~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~- 236 (810)
+++++...|-.+++|+.........++-+.|+...++++...|. ....++..|....+-+....+|+++.+...
T Consensus 291 ~~q~~~y~~~~~evw~dys~Y~~~isd~q~al~tv~rg~~~sps-----L~~~lse~yel~nd~e~v~~~fdk~~q~L~r 365 (660)
T COG5107 291 HNQILDYFYYAEEVWFDYSEYLIGISDKQKALKTVERGIEMSPS-----LTMFLSEYYELVNDEEAVYGCFDKCTQDLKR 365 (660)
T ss_pred HHHHHHHhhhhHHHHHHHHHHHhhccHHHHHHHHHHhcccCCCc-----hheeHHHHHhhcccHHHHhhhHHHHHHHHHH
Confidence 33444444445566777777777888889999888888777765 344788888777777776666666554311
Q ss_pred -----------CC--CC-CcHHHHHH-----------HHHHHHhcCCHHHHHHHHHHhhccCCchhHhHHHHHHHH-HHH
Q 003563 237 -----------SG--KE-LPLKLKVK-----------AGICYLRLGNMEKAEILFADLQWKNAIDHADLITEVADT-LMS 290 (810)
Q Consensus 237 -----------~~--~~-~~~~~~~~-----------la~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~la~~-~~~ 290 (810)
.. ++ ...+..+. ....-.+..-.+.|..+|.++-+..- ...+++..-|.+ +..
T Consensus 366 ~ys~~~s~~~s~~D~N~e~~~Ell~kr~~k~t~v~C~~~N~v~r~~Gl~aaR~~F~k~rk~~~-~~h~vyi~~A~~E~~~ 444 (660)
T COG5107 366 KYSMGESESASKVDNNFEYSKELLLKRINKLTFVFCVHLNYVLRKRGLEAARKLFIKLRKEGI-VGHHVYIYCAFIEYYA 444 (660)
T ss_pred HHhhhhhhhhccccCCccccHHHHHHHHhhhhhHHHHHHHHHHHHhhHHHHHHHHHHHhccCC-CCcceeeeHHHHHHHh
Confidence 00 11 11222111 11222344556778888888755432 233444433333 456
Q ss_pred cCCcHHHHHHHHHHHhccCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHhhcCCC--HHHHHHHHHHHHHcCCHHHHHH
Q 003563 291 LGHSNSALKYYHFLETNAGTDNGYLYLKLAECYLSLKERAHAIMFFYKALDRFEDN--IDARLTLASLLLEEAKEEEAIT 368 (810)
Q Consensus 291 ~~~~~~A~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~--~~~~~~la~~~~~~g~~~~A~~ 368 (810)
.|++.-|-.+|+--+.. .|+++......-..+...++-+.|...|+++++.-.+. ..+|-.+...-..-|+...+..
T Consensus 445 ~~d~~ta~~ifelGl~~-f~d~~~y~~kyl~fLi~inde~naraLFetsv~r~~~~q~k~iy~kmi~YEs~~G~lN~v~s 523 (660)
T COG5107 445 TGDRATAYNIFELGLLK-FPDSTLYKEKYLLFLIRINDEENARALFETSVERLEKTQLKRIYDKMIEYESMVGSLNNVYS 523 (660)
T ss_pred cCCcchHHHHHHHHHHh-CCCchHHHHHHHHHHHHhCcHHHHHHHHHHhHHHHHHhhhhHHHHHHHHHHHhhcchHHHHh
Confidence 89999999999987755 77777777777778889999999999999988764433 4455555555666677777766
Q ss_pred hcCCCCCCCcc
Q 003563 369 LLSPPKDLDSL 379 (810)
Q Consensus 369 ~~~~a~~~~~~ 379 (810)
+-++..+..|.
T Consensus 524 Le~rf~e~~pQ 534 (660)
T COG5107 524 LEERFRELVPQ 534 (660)
T ss_pred HHHHHHHHcCc
Confidence 66655566664
No 290
>COG0790 FOG: TPR repeat, SEL1 subfamily [General function prediction only]
Probab=96.51 E-value=1.2 Score=45.49 Aligned_cols=167 Identities=17% Similarity=0.081 Sum_probs=117.0
Q ss_pred HHHHcCChHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHc----CCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHH----
Q 003563 76 AHSALGNHKSAFDFYVIAAHLSPKDSALWKQLLTFAVQK----GDTAQAMYYIRQAIRAEPKDISLRIHLASFYVE---- 147 (810)
Q Consensus 76 ~~~~~g~~~~A~~~~~~a~~~~p~~~~~~~~la~~~~~~----g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~---- 147 (810)
.....+++..|...+.++... .++.....++.++... .+..+|..+|..+. ...++.+.+.+|.+|..
T Consensus 50 ~~~~~~~~~~a~~~~~~a~~~--~~~~a~~~l~~~y~~g~gv~~~~~~A~~~~~~~a--~~g~~~a~~~lg~~~~~G~gv 125 (292)
T COG0790 50 GSAYPPDYAKALKSYEKAAEL--GDAAALALLGQMYGAGKGVSRDKTKAADWYRCAA--ADGLAEALFNLGLMYANGRGV 125 (292)
T ss_pred cccccccHHHHHHHHHHhhhc--CChHHHHHHHHHHHhccCccccHHHHHHHHHHHh--hcccHHHHHhHHHHHhcCCCc
Confidence 334567888888888887763 3446777888887654 46788999999554 45678888999999887
Q ss_pred cCCHHHHHHHHHHHHHhCCCC-HHHHHHHHHHHHHcC-------ChHHHHHHHHHHHhhCCCCCChHHHHHHHHHHHH--
Q 003563 148 IGDYEKAAESYEQIQKLFPDN-VDATKTGAQLFLKCG-------QTARSIGILEEYLKVHPSDADLSVIDLLVAILME-- 217 (810)
Q Consensus 148 ~g~~~~A~~~~~~~l~~~p~~-~~~~~~la~~~~~~g-------~~~~A~~~~~~~l~~~p~~~~~~~~~~la~~~~~-- 217 (810)
..+..+|..+|+++....-.. ..+...++..|..-. +...|...|.++.... ++ .+...+|.+|..
T Consensus 126 ~~d~~~A~~~~~~Aa~~g~~~a~~~~~~l~~~~~~g~~~~~~~~~~~~A~~~~~~aa~~~--~~--~a~~~lg~~y~~G~ 201 (292)
T COG0790 126 PLDLVKALKYYEKAAKLGNVEAALAMYRLGLAYLSGLQALAVAYDDKKALYLYRKAAELG--NP--DAQLLLGRMYEKGL 201 (292)
T ss_pred ccCHHHHHHHHHHHHHcCChhHHHHHHHHHHHHHcChhhhcccHHHHhHHHHHHHHHHhc--CH--HHHHHHHHHHHcCC
Confidence 458999999999998875333 234777777776542 2236777777776655 22 256678877754
Q ss_pred --cCCHHHHHHHHHHHHHHhcCCCCCcHHHHHHHHHHHHhcC
Q 003563 218 --NNAYEKTLQHIEHAQIVRFSGKELPLKLKVKAGICYLRLG 257 (810)
Q Consensus 218 --~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g 257 (810)
..++.+|..+|.++.+. .. ....+.++ ++...|
T Consensus 202 Gv~~d~~~A~~wy~~Aa~~----g~--~~a~~~~~-~~~~~g 236 (292)
T COG0790 202 GVPRDLKKAFRWYKKAAEQ----GD--GAACYNLG-LMYLNG 236 (292)
T ss_pred CCCcCHHHHHHHHHHHHHC----CC--HHHHHHHH-HHHhcC
Confidence 34788888888888876 22 66667777 555555
No 291
>KOG3824 consensus Huntingtin interacting protein HYPE [General function prediction only]
Probab=96.50 E-value=0.011 Score=56.75 Aligned_cols=71 Identities=14% Similarity=0.165 Sum_probs=54.2
Q ss_pred HHHHHHcCChHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHHHHHHHHHH
Q 003563 74 GLAHSALGNHKSAFDFYVIAAHLSPKDSALWKQLLTFAVQKGDTAQAMYYIRQAIRAEPKDISLRIHLASF 144 (810)
Q Consensus 74 ~~~~~~~g~~~~A~~~~~~a~~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~ 144 (810)
+.-....|+.++|...|+.|+.+.|.+++++..+|......++.-+|-.||-+++.++|.+.+++.+.+..
T Consensus 123 A~~~~~~Gk~ekA~~lfeHAlalaP~~p~~L~e~G~f~E~~~~iv~ADq~Y~~ALtisP~nseALvnR~RT 193 (472)
T KOG3824|consen 123 AGRSRKDGKLEKAMTLFEHALALAPTNPQILIEMGQFREMHNEIVEADQCYVKALTISPGNSEALVNRART 193 (472)
T ss_pred HHHHHhccchHHHHHHHHHHHhcCCCCHHHHHHHhHHHHhhhhhHhhhhhhheeeeeCCCchHHHhhhhcc
Confidence 33345677888888888888888888888888888887777888888888888888888887777666543
No 292
>PF09613 HrpB1_HrpK: Bacterial type III secretion protein (HrpB1_HrpK); InterPro: IPR013394 This family of proteins is encoded by genes found within type III secretion operons in a limited range of species including Xanthomonas, Ralstonia and Burkholderia.
Probab=96.45 E-value=0.059 Score=47.53 Aligned_cols=87 Identities=21% Similarity=0.182 Sum_probs=72.4
Q ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCCCHHHHHHHHHHH
Q 003563 32 GVTKMLGEASLQYAYGNFEQAISLLKEVVRLSPNLPETYNTLGLAHSALGNHKSAFDFYVIAAHLSPKDSALWKQLLTFA 111 (810)
Q Consensus 32 ~~~~~l~~a~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~p~~~~~~~~la~~~ 111 (810)
-+..++.........++.+++..++..+-...|+.++.-..-|.++...|++.+|+..++.+.+..|..+.+--.++.|+
T Consensus 9 iv~gLie~~~~al~~~~~~D~e~lL~ALrvLRP~~~e~~~~~~~l~i~r~~w~dA~rlLr~l~~~~~~~p~~kALlA~CL 88 (160)
T PF09613_consen 9 IVGGLIEVLSVALRLGDPDDAEALLDALRVLRPEFPELDLFDGWLHIVRGDWDDALRLLRELEERAPGFPYAKALLALCL 88 (160)
T ss_pred HHHHHHHHHHHHHccCChHHHHHHHHHHHHhCCCchHHHHHHHHHHHHhCCHHHHHHHHHHHhccCCCChHHHHHHHHHH
Confidence 45667777778888888888888888888888888888888888888899999999988888888888888888888888
Q ss_pred HHcCCHH
Q 003563 112 VQKGDTA 118 (810)
Q Consensus 112 ~~~g~~~ 118 (810)
..+|+.+
T Consensus 89 ~~~~D~~ 95 (160)
T PF09613_consen 89 YALGDPS 95 (160)
T ss_pred HHcCChH
Confidence 7777653
No 293
>KOG1308 consensus Hsp70-interacting protein Hip/Transient component of progesterone receptor complexes and an Hsp70-binding protein [Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=96.43 E-value=0.0036 Score=61.24 Aligned_cols=92 Identities=17% Similarity=0.117 Sum_probs=66.0
Q ss_pred HHHHHcCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCChHHH
Q 003563 109 TFAVQKGDTAQAMYYIRQAIRAEPKDISLRIHLASFYVEIGDYEKAAESYEQIQKLFPDNVDATKTGAQLFLKCGQTARS 188 (810)
Q Consensus 109 ~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A 188 (810)
.-.+..|.+++|+..|..++.++|.....+...+.++..+++...|+.-+..++.++|+...-+...+.....+|++++|
T Consensus 122 ~eAln~G~~~~ai~~~t~ai~lnp~~a~l~~kr~sv~lkl~kp~~airD~d~A~ein~Dsa~~ykfrg~A~rllg~~e~a 201 (377)
T KOG1308|consen 122 SEALNDGEFDTAIELFTSAIELNPPLAILYAKRASVFLKLKKPNAAIRDCDFAIEINPDSAKGYKFRGYAERLLGNWEEA 201 (377)
T ss_pred HHHhcCcchhhhhcccccccccCCchhhhcccccceeeeccCCchhhhhhhhhhccCcccccccchhhHHHHHhhchHHH
Confidence 33445666777777777777777777777777777777777777777777777777777776666677777777777777
Q ss_pred HHHHHHHHhhCC
Q 003563 189 IGILEEYLKVHP 200 (810)
Q Consensus 189 ~~~~~~~l~~~p 200 (810)
...+..+.+++-
T Consensus 202 a~dl~~a~kld~ 213 (377)
T KOG1308|consen 202 AHDLALACKLDY 213 (377)
T ss_pred HHHHHHHHhccc
Confidence 777777776653
No 294
>KOG1464 consensus COP9 signalosome, subunit CSN2 [Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=96.42 E-value=0.4 Score=45.54 Aligned_cols=191 Identities=14% Similarity=0.178 Sum_probs=95.3
Q ss_pred HHcCCHHHHHHHHHHHHHhCCCCh----HHHHHHHHHHHHcCChHHHHHHHHHHHhcC-----CCCH-HHHHHHHHHHHH
Q 003563 44 YAYGNFEQAISLLKEVVRLSPNLP----ETYNTLGLAHSALGNHKSAFDFYVIAAHLS-----PKDS-ALWKQLLTFAVQ 113 (810)
Q Consensus 44 ~~~g~~~~A~~~~~~~l~~~p~~~----~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~-----p~~~-~~~~~la~~~~~ 113 (810)
+...+.++|+.-|+++++..|... .++-.+..+++.+|++++-...|.+.+..- .+.. .....+-..-..
T Consensus 38 l~e~~p~~Al~sF~kVlelEgEKgeWGFKALKQmiKI~f~l~~~~eMm~~Y~qlLTYIkSAVTrNySEKsIN~IlDyiSt 117 (440)
T KOG1464|consen 38 LKEDEPKEALSSFQKVLELEGEKGEWGFKALKQMIKINFRLGNYKEMMERYKQLLTYIKSAVTRNYSEKSINSILDYIST 117 (440)
T ss_pred ccccCHHHHHHHHHHHHhcccccchhHHHHHHHHHHHHhccccHHHHHHHHHHHHHHHHHHHhccccHHHHHHHHHHHhh
Confidence 345588999999999999988754 466777888999999999888887766421 1111 111111111111
Q ss_pred cCCHHHHHHHHHHHHHc--CCCCHHHH----HHHHHHHHHcCCHHHHHHHHHHHHHhCCCC------------HHHHHHH
Q 003563 114 KGDTAQAMYYIRQAIRA--EPKDISLR----IHLASFYVEIGDYEKAAESYEQIQKLFPDN------------VDATKTG 175 (810)
Q Consensus 114 ~g~~~~A~~~~~~al~~--~p~~~~~~----~~la~~~~~~g~~~~A~~~~~~~l~~~p~~------------~~~~~~l 175 (810)
..+.+--...|+.-+.. +..+...| ..+|.+|+..|+|.+-...++++-+....+ .+++..-
T Consensus 118 S~~m~LLQ~FYeTTL~ALkdAKNeRLWFKTNtKLgkl~fd~~e~~kl~KIlkqLh~SCq~edGedD~kKGtQLLEiYAlE 197 (440)
T KOG1464|consen 118 SKNMDLLQEFYETTLDALKDAKNERLWFKTNTKLGKLYFDRGEYTKLQKILKQLHQSCQTEDGEDDQKKGTQLLEIYALE 197 (440)
T ss_pred hhhhHHHHHHHHHHHHHHHhhhcceeeeeccchHhhhheeHHHHHHHHHHHHHHHHHhccccCchhhhccchhhhhHhhH
Confidence 12222222222222221 11222222 246667777766666666555554432211 1233333
Q ss_pred HHHHHHcCChHHHHHHHHHHHhhCCCCCChHHHH----HHHHHHHHcCCHHHHHHHHHHHHHH
Q 003563 176 AQLFLKCGQTARSIGILEEYLKVHPSDADLSVID----LLVAILMENNAYEKTLQHIEHAQIV 234 (810)
Q Consensus 176 a~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~~----~la~~~~~~g~~~~A~~~~~~~~~~ 234 (810)
.++|..+++..+-..+|++++.+...-+.+.+.- .-|..+.+.|+|++|-.-|-++.+.
T Consensus 198 IQmYT~qKnNKkLK~lYeqalhiKSAIPHPlImGvIRECGGKMHlreg~fe~AhTDFFEAFKN 260 (440)
T KOG1464|consen 198 IQMYTEQKNNKKLKALYEQALHIKSAIPHPLIMGVIRECGGKMHLREGEFEKAHTDFFEAFKN 260 (440)
T ss_pred hhhhhhhcccHHHHHHHHHHHHhhccCCchHHHhHHHHcCCccccccchHHHHHhHHHHHHhc
Confidence 4455555555555555666555433322221111 1123344455555555544444443
No 295
>PF07079 DUF1347: Protein of unknown function (DUF1347); InterPro: IPR010764 This family consists of several hypothetical bacterial proteins of around 610 residues in length. Members of this family are highly conserved and seem to be specific to Chlamydia species. The function of this family is unknown.
Probab=96.41 E-value=1.4 Score=45.41 Aligned_cols=130 Identities=9% Similarity=0.022 Sum_probs=96.3
Q ss_pred HHHHHHHHHHHcCChHHHHHHHHHHHhcCCCCHH-----HHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHHHHHHHHH
Q 003563 69 TYNTLGLAHSALGNHKSAFDFYVIAAHLSPKDSA-----LWKQLLTFAVQKGDTAQAMYYIRQAIRAEPKDISLRIHLAS 143 (810)
Q Consensus 69 ~~~~l~~~~~~~g~~~~A~~~~~~a~~~~p~~~~-----~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~ 143 (810)
.+...|.++..++++.+|...|.+......+.+. .+.+.....+-+++.+.-..++...-+..|..+....-.|.
T Consensus 8 llc~Qgf~Lqkq~~~~esEkifskI~~e~~~~~f~lkeEvl~grilnAffl~nld~Me~~l~~l~~~~~~s~~l~LF~~L 87 (549)
T PF07079_consen 8 LLCFQGFILQKQKKFQESEKIFSKIYDEKESSPFLLKEEVLGGRILNAFFLNNLDLMEKQLMELRQQFGKSAYLPLFKAL 87 (549)
T ss_pred HHHHhhHHHHHHhhhhHHHHHHHHHHHHhhcchHHHHHHHHhhHHHHHHHHhhHHHHHHHHHHHHHhcCCchHHHHHHHH
Confidence 3456688899999999999999998876655543 23333333445667777777777777778888888888999
Q ss_pred HHHHcCCHHHHHHHHHHHHHhCCCC---------------HHHHHHHHHHHHHcCChHHHHHHHHHHHhh
Q 003563 144 FYVEIGDYEKAAESYEQIQKLFPDN---------------VDATKTGAQLFLKCGQTARSIGILEEYLKV 198 (810)
Q Consensus 144 ~~~~~g~~~~A~~~~~~~l~~~p~~---------------~~~~~~la~~~~~~g~~~~A~~~~~~~l~~ 198 (810)
..++.+++.+|++.+......-... ...-...|.+++..|++.++...+++.+..
T Consensus 88 ~~Y~~k~~~kal~~ls~w~~~~~~~~~~~Ld~ni~~l~~df~l~~i~a~sLIe~g~f~EgR~iLn~i~~~ 157 (549)
T PF07079_consen 88 VAYKQKEYRKALQALSVWKEQIKGTESPWLDTNIQQLFSDFFLDEIEAHSLIETGRFSEGRAILNRIIER 157 (549)
T ss_pred HHHHhhhHHHHHHHHHHHHhhhcccccchhhhhHHHHhhHHHHHHHHHHHHHhcCCcchHHHHHHHHHHH
Confidence 9999999999999888776542111 112234578899999999999999988764
No 296
>COG5159 RPN6 26S proteasome regulatory complex component [Posttranslational modification, protein turnover, chaperones]
Probab=96.26 E-value=1.2 Score=42.89 Aligned_cols=54 Identities=20% Similarity=0.025 Sum_probs=42.0
Q ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHhCC--------CChHHHHHHHHHHHHcCChHHHHHHH
Q 003563 37 LGEASLQYAYGNFEQAISLLKEVVRLSP--------NLPETYNTLGLAHSALGNHKSAFDFY 90 (810)
Q Consensus 37 l~~a~~~~~~g~~~~A~~~~~~~l~~~p--------~~~~~~~~l~~~~~~~g~~~~A~~~~ 90 (810)
+..|+.....+++++|+..|.+++.... +...+...++.+|...|++..--+..
T Consensus 7 le~a~~~v~~~~~~~ai~~yk~iL~kg~s~dek~~nEqE~tvlel~~lyv~~g~~~~l~~~i 68 (421)
T COG5159 7 LELANNAVKSNDIEKAIGEYKRILGKGVSKDEKTLNEQEATVLELFKLYVSKGDYCSLGDTI 68 (421)
T ss_pred HHHHHHhhhhhhHHHHHHHHHHHhcCCCChhhhhhhHHHHHHHHHHHHHHhcCCcchHHHHH
Confidence 6778889999999999999999987621 13346788899999999887644443
No 297
>PF13174 TPR_6: Tetratricopeptide repeat; PDB: 3QKY_A 2XEV_A 3URZ_B 2Q7F_A.
Probab=96.24 E-value=0.009 Score=37.24 Aligned_cols=33 Identities=30% Similarity=0.640 Sum_probs=27.7
Q ss_pred HHHHHHHHHHHHccCHHHHHHHHHHHHhhcCCC
Q 003563 314 YLYLKLAECYLSLKERAHAIMFFYKALDRFEDN 346 (810)
Q Consensus 314 ~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~ 346 (810)
++++.+|.++...|++++|+..|+++++..|++
T Consensus 1 ~a~~~~a~~~~~~g~~~~A~~~~~~~~~~~P~s 33 (33)
T PF13174_consen 1 DALYRLARCYYKLGDYDEAIEYFQRLIKRYPDS 33 (33)
T ss_dssp HHHHHHHHHHHHHCHHHHHHHHHHHHHHHSTTS
T ss_pred CHHHHHHHHHHHccCHHHHHHHHHHHHHHCcCC
Confidence 357788889888889999999999998888864
No 298
>PF04910 Tcf25: Transcriptional repressor TCF25; InterPro: IPR006994 This entry appears to represent a novel family of basic helix-loop-helix (bHLH) proteins that control differentiation and development of a variety of organs [, ]. Human Nulp1 (Q2MK75 from SWISSPROT) is a basic helix-loop-helix protein expressed broadly during early embryonic organogenesis. Over expression of human Nulp1 in COS-7 cells inhibits the transcriptional activity of serum response factor (SRF), suggesting that Nulp1 may act as a novel bHLH transcriptional repressor in the SRF signalling pathway to mediate cellular functions [].
Probab=96.18 E-value=0.2 Score=52.09 Aligned_cols=174 Identities=11% Similarity=0.002 Sum_probs=102.4
Q ss_pred HHHHhCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHhhCCCCCChHHHHHHHHH--HHHcCCHHHHHHHHHHHHHHhcC
Q 003563 160 QIQKLFPDNVDATKTGAQLFLKCGQTARSIGILEEYLKVHPSDADLSVIDLLVAI--LMENNAYEKTLQHIEHAQIVRFS 237 (810)
Q Consensus 160 ~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~~~la~~--~~~~g~~~~A~~~~~~~~~~~~~ 237 (810)
..++.+|-+.+++..++.++..+|+.+.|.+.+++++-....... . ....+ -...|.- .--|. ..
T Consensus 31 ~ll~~~PyHidtLlqls~v~~~~gd~~~A~~lleRALf~~e~~~~--~--~F~~~~~~~~~g~~---rL~~~------~~ 97 (360)
T PF04910_consen 31 NLLQKNPYHIDTLLQLSEVYRQQGDHAQANDLLERALFAFERAFH--P--SFSPFRSNLTSGNC---RLDYR------RP 97 (360)
T ss_pred HHHHHCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHHH--H--HhhhhhcccccCcc---ccCCc------cc
Confidence 334567777777777777777777777777777776532110000 0 00000 0000000 00000 00
Q ss_pred CCCCcHHHHHHHHHHHHhcCCHHHHHHHHHHhhccCCchhH-hHHHHHHHHHHHcCCcHHHHHHHHHHHhccCC----CC
Q 003563 238 GKELPLKLKVKAGICYLRLGNMEKAEILFADLQWKNAIDHA-DLITEVADTLMSLGHSNSALKYYHFLETNAGT----DN 312 (810)
Q Consensus 238 ~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~-~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~----~~ 312 (810)
.+..-..+.+.....+.+.|-+..|.++.+-++..+|..++ .+.+.+-....+.++++--++.++........ .-
T Consensus 98 eNR~fflal~r~i~~L~~RG~~rTAlE~~KlLlsLdp~~DP~g~ll~ID~~ALrs~~y~~Li~~~~~~~~~~~~~~~~~l 177 (360)
T PF04910_consen 98 ENRQFFLALFRYIQSLGRRGCWRTALEWCKLLLSLDPDEDPLGVLLFIDYYALRSRQYQWLIDFSESPLAKCYRNWLSLL 177 (360)
T ss_pred cchHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHhcCCCCCcchhHHHHHHHHHhcCCHHHHHHHHHhHhhhhhhhhhhhC
Confidence 01112234555666777888888888888888888887444 34555555557777887777777765542111 23
Q ss_pred HHHHHHHHHHHHHccCH---------------HHHHHHHHHHHhhcCCC
Q 003563 313 GYLYLKLAECYLSLKER---------------AHAIMFFYKALDRFEDN 346 (810)
Q Consensus 313 ~~~~~~la~~~~~~g~~---------------~~A~~~~~~al~~~p~~ 346 (810)
|..-+..+.++...++. +.|...+.+|+...|.-
T Consensus 178 Pn~a~S~aLA~~~l~~~~~~~~~~~~~~~~~~~~A~~~L~~Ai~~fP~v 226 (360)
T PF04910_consen 178 PNFAFSIALAYFRLEKEESSQSSAQSGRSENSESADEALQKAILRFPWV 226 (360)
T ss_pred ccHHHHHHHHHHHhcCccccccccccccccchhHHHHHHHHHHHHhHHH
Confidence 45667778888888877 88999999999888753
No 299
>PRK11619 lytic murein transglycosylase; Provisional
Probab=96.10 E-value=3.4 Score=46.78 Aligned_cols=269 Identities=10% Similarity=0.064 Sum_probs=150.3
Q ss_pred HHHHHHHhCCCChHHHHHHHHHHHH---cCChHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC
Q 003563 55 LLKEVVRLSPNLPETYNTLGLAHSA---LGNHKSAFDFYVIAAHLSPKDSALWKQLLTFAVQKGDTAQAMYYIRQAIRAE 131 (810)
Q Consensus 55 ~~~~~l~~~p~~~~~~~~l~~~~~~---~g~~~~A~~~~~~a~~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~ 131 (810)
-+...++.+|+.|..-......... .+++..-+.++ ...|.+....+..+......|+.++|.....++....
T Consensus 84 ev~~Fl~~~~~~P~~~~Lr~~~l~~La~~~~w~~~~~~~----~~~p~~~~~~c~~~~A~~~~G~~~~A~~~a~~lW~~g 159 (644)
T PRK11619 84 QVTNFIRANPTLPPARSLQSRFVNELARREDWRGLLAFS----PEKPKPVEARCNYYYAKWATGQQQEAWQGAKELWLTG 159 (644)
T ss_pred HHHHHHHHCCCCchHHHHHHHHHHHHHHccCHHHHHHhc----CCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHhccC
Confidence 5556677788877766555554433 45555544422 2347888888889999999999988888888776654
Q ss_pred CCCHHHHHHH------------------HHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHH-cCChHHHHHHH
Q 003563 132 PKDISLRIHL------------------ASFYVEIGDYEKAAESYEQIQKLFPDNVDATKTGAQLFLK-CGQTARSIGIL 192 (810)
Q Consensus 132 p~~~~~~~~l------------------a~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~-~g~~~~A~~~~ 192 (810)
...+.....+ .......|+...|......+ |.+... ++..... ..+...+...+
T Consensus 160 ~~~p~~cd~l~~~~~~~g~lt~~d~w~R~~~al~~~~~~lA~~l~~~l----~~~~~~---~a~a~~al~~~p~~~~~~~ 232 (644)
T PRK11619 160 KSLPNACDKLFSVWQQSGKQDPLAYLERIRLAMKAGNTGLVTYLAKQL----PADYQT---IASALIKLQNDPNTVETFA 232 (644)
T ss_pred CCCChHHHHHHHHHHHcCCCCHHHHHHHHHHHHHCCCHHHHHHHHHhc----ChhHHH---HHHHHHHHHHCHHHHHHHh
Confidence 3333333333 33334444444443333222 111111 1111111 11222222111
Q ss_pred HHHHhhCCCCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhcCCCCCcHHHHHHHHHHHHhcCCHHHHHHHHHHhhcc
Q 003563 193 EEYLKVHPSDADLSVIDLLVAILMENNAYEKTLQHIEHAQIVRFSGKELPLKLKVKAGICYLRLGNMEKAEILFADLQWK 272 (810)
Q Consensus 193 ~~~l~~~p~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~ 272 (810)
.. ..|+... .....++..-....+.+.|...+.+......-+.+....+...++.-....+...+|...+..+...
T Consensus 233 ~~---~~~~~~~-~~~~~~~l~Rlar~d~~~A~~~~~~~~~~~~~~~~~~~~~~~~lA~~~a~~~~~~~a~~w~~~~~~~ 308 (644)
T PRK11619 233 RT---TGPTDFT-RQMAAVAFASVARQDAENARLMIPSLVRAQKLNEDQRQELRDIVAWRLMGNDVTDEQAKWRDDVIMR 308 (644)
T ss_pred hc---cCCChhh-HHHHHHHHHHHHHhCHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHhccCCHHHHHHHHhcccc
Confidence 11 1122111 1222334444456778889988887654421111122233444454444443366778887776433
Q ss_pred CCchhHhHHHHHHHHHHHcCCcHHHHHHHHHHHhccCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHh
Q 003563 273 NAIDHADLITEVADTLMSLGHSNSALKYYHFLETNAGTDNGYLYLKLAECYLSLKERAHAIMFFYKALD 341 (810)
Q Consensus 273 ~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~ 341 (810)
.. +....-....+....++++.+...+..+... ........+-+|+.+...|+.++|...|+++..
T Consensus 309 ~~--~~~~~e~r~r~Al~~~dw~~~~~~i~~L~~~-~~~~~rw~YW~aRa~~~~g~~~~A~~~~~~~a~ 374 (644)
T PRK11619 309 SQ--STSLLERRVRMALGTGDRRGLNTWLARLPME-AKEKDEWRYWQADLLLEQGRKAEAEEILRQLMQ 374 (644)
T ss_pred cC--CcHHHHHHHHHHHHccCHHHHHHHHHhcCHh-hccCHhhHHHHHHHHHHcCCHHHHHHHHHHHhc
Confidence 22 2333344444556888999888888776543 345777888999999999999999999999854
No 300
>PF04781 DUF627: Protein of unknown function (DUF627); InterPro: IPR006866 This domain represents the N-terminal region of several plant proteins of unknown function.
Probab=96.09 E-value=0.073 Score=43.41 Aligned_cols=103 Identities=17% Similarity=0.159 Sum_probs=67.7
Q ss_pred HHHHHHHcCCHHHHHHHHHHHHHhCCCChH---HHHHHHHHHHHcCChHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcC
Q 003563 39 EASLQYAYGNFEQAISLLKEVVRLSPNLPE---TYNTLGLAHSALGNHKSAFDFYVIAAHLSPKDSALWKQLLTFAVQKG 115 (810)
Q Consensus 39 ~a~~~~~~g~~~~A~~~~~~~l~~~p~~~~---~~~~l~~~~~~~g~~~~A~~~~~~a~~~~p~~~~~~~~la~~~~~~g 115 (810)
+|..++.+||+-+|+++.+..+..++++.. .+..-|.++..+ +......+...-+.
T Consensus 2 ~A~~~~~rGnhiKAL~iied~i~~h~~~~~~~~lh~~QG~if~~l------------A~~ten~d~k~~yL--------- 60 (111)
T PF04781_consen 2 KAKDYFARGNHIKALEIIEDLISRHGEDESSWLLHRLQGTIFYKL------------AKKTENPDVKFRYL--------- 60 (111)
T ss_pred hHHHHHHccCHHHHHHHHHHHHHHccCCCchHHHHHHHhHHHHHH------------HHhccCchHHHHHH---------
Confidence 467789999999999999999998887664 444455555432 22222222222222
Q ss_pred CHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Q 003563 116 DTAQAMYYIRQAIRAEPKDISLRIHLASFYVEIGDYEKAAESYEQIQKL 164 (810)
Q Consensus 116 ~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~ 164 (810)
-.++++|.++..+.|..+..++.+|.-+-....|++++.-.++++..
T Consensus 61 --l~sve~~s~a~~Lsp~~A~~L~~la~~l~s~~~Ykk~v~kak~~Lsv 107 (111)
T PF04781_consen 61 --LGSVECFSRAVELSPDSAHSLFELASQLGSVKYYKKAVKKAKRGLSV 107 (111)
T ss_pred --HHhHHHHHHHhccChhHHHHHHHHHHHhhhHHHHHHHHHHHHHHhcc
Confidence 23567777777777777777777777766666777777777776654
No 301
>PF14561 TPR_20: Tetratricopeptide repeat; PDB: 3QOU_A 2R5S_A 3QDN_B.
Probab=95.93 E-value=0.13 Score=41.02 Aligned_cols=66 Identities=20% Similarity=0.188 Sum_probs=35.7
Q ss_pred HHHHHHHHHhCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHhhCCCCCChHHHHHHHHHHHHcCC
Q 003563 155 AESYEQIQKLFPDNVDATKTGAQLFLKCGQTARSIGILEEYLKVHPSDADLSVIDLLVAILMENNA 220 (810)
Q Consensus 155 ~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~~~la~~~~~~g~ 220 (810)
+..+++.+..+|++.++.+.+|..+...|++++|++.+-.+++.+++..+-.+...+..++...|.
T Consensus 8 ~~al~~~~a~~P~D~~ar~~lA~~~~~~g~~e~Al~~Ll~~v~~dr~~~~~~ar~~ll~~f~~lg~ 73 (90)
T PF14561_consen 8 IAALEAALAANPDDLDARYALADALLAAGDYEEALDQLLELVRRDRDYEDDAARKRLLDIFELLGP 73 (90)
T ss_dssp HHHHHHHHHHSTT-HHHHHHHHHHHHHTT-HHHHHHHHHHHHCC-TTCCCCHHHHHHHHHHHHH-T
T ss_pred HHHHHHHHHcCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCccccccHHHHHHHHHHHHcCC
Confidence 445566666666666666666666666666666666666666666555432233334444443433
No 302
>KOG1310 consensus WD40 repeat protein [General function prediction only]
Probab=95.78 E-value=0.039 Score=57.12 Aligned_cols=109 Identities=16% Similarity=0.064 Sum_probs=89.9
Q ss_pred CCCCHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHc---CChHHHHHHHHHHHhcCCCCHHH
Q 003563 27 NKLSPGVTKMLGEASLQYAYGNFEQAISLLKEVVRLSPNLPETYNTLGLAHSAL---GNHKSAFDFYVIAAHLSPKDSAL 103 (810)
Q Consensus 27 ~~~~~~~~~~l~~a~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~l~~~~~~~---g~~~~A~~~~~~a~~~~p~~~~~ 103 (810)
.++++.+...+..|+-.+..+....|+..|.+++...|.....+...+.++.+. |+.-.|+.....++.++|....+
T Consensus 368 ~eL~e~ie~~~~egnd~ly~~~~~~~i~~~s~a~q~~~~~~~~l~nraa~lmkRkW~~d~~~AlrDch~Alrln~s~~ka 447 (758)
T KOG1310|consen 368 YELPENIEKFKTEGNDGLYESIVSGAISHYSRAIQYVPDAIYLLENRAAALMKRKWRGDSYLALRDCHVALRLNPSIQKA 447 (758)
T ss_pred hhchHHHHHHHhhccchhhhHHHHHHHHHHHHHhhhccchhHHHHhHHHHHHhhhccccHHHHHHhHHhhccCChHHHHH
Confidence 457788888888898888899999999999999999998888888888887763 56667777888888888888888
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCH
Q 003563 104 WKQLLTFAVQKGDTAQAMYYIRQAIRAEPKDI 135 (810)
Q Consensus 104 ~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~ 135 (810)
|+.|+.++...+++.+|+.+...+....|.+.
T Consensus 448 h~~la~aL~el~r~~eal~~~~alq~~~Ptd~ 479 (758)
T KOG1310|consen 448 HFRLARALNELTRYLEALSCHWALQMSFPTDV 479 (758)
T ss_pred HHHHHHHHHHHhhHHHhhhhHHHHhhcCchhh
Confidence 88888888888888888888877777777443
No 303
>TIGR02561 HrpB1_HrpK type III secretion protein HrpB1/HrpK. This gene is found within type III secretion operons in a limited range of species including Xanthomonas, Ralstonia and Burkholderia.
Probab=95.76 E-value=0.55 Score=40.74 Aligned_cols=85 Identities=19% Similarity=0.046 Sum_probs=69.2
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCCCHHHHHHHHHHHH
Q 003563 33 VTKMLGEASLQYAYGNFEQAISLLKEVVRLSPNLPETYNTLGLAHSALGNHKSAFDFYVIAAHLSPKDSALWKQLLTFAV 112 (810)
Q Consensus 33 ~~~~l~~a~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~p~~~~~~~~la~~~~ 112 (810)
+..++.........++.+++..++..+--..|+.++.-..-|.++...|++.+|+..++...+..+..+..--.++.|+.
T Consensus 10 v~gLi~~~~~aL~~~d~~D~e~lLdALrvLrP~~~e~d~~dg~l~i~rg~w~eA~rvlr~l~~~~~~~p~~kAL~A~CL~ 89 (153)
T TIGR02561 10 LGGLIEVLMYALRSADPYDAQAMLDALRVLRPNLKELDMFDGWLLIARGNYDEAARILRELLSSAGAPPYGKALLALCLN 89 (153)
T ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCccccchhHHHHHHHcCCHHHHHHHHHhhhccCCCchHHHHHHHHHHH
Confidence 44566666677778889999888888888889988888888999999999999999998888877777777777777777
Q ss_pred HcCCH
Q 003563 113 QKGDT 117 (810)
Q Consensus 113 ~~g~~ 117 (810)
.+|+.
T Consensus 90 al~Dp 94 (153)
T TIGR02561 90 AKGDA 94 (153)
T ss_pred hcCCh
Confidence 77764
No 304
>PF13176 TPR_7: Tetratricopeptide repeat; PDB: 3SF4_C 3RO3_A 3RO2_A.
Probab=95.74 E-value=0.021 Score=36.43 Aligned_cols=28 Identities=21% Similarity=0.267 Sum_probs=20.8
Q ss_pred HHHHHHHHHHHccCHHHHHHHHHHHHhh
Q 003563 315 LYLKLAECYLSLKERAHAIMFFYKALDR 342 (810)
Q Consensus 315 ~~~~la~~~~~~g~~~~A~~~~~~al~~ 342 (810)
++..+|.+|...|++++|+++|++++.+
T Consensus 1 al~~Lg~~~~~~g~~~~Ai~~y~~aL~l 28 (36)
T PF13176_consen 1 ALNNLGRIYRQQGDYEKAIEYYEQALAL 28 (36)
T ss_dssp HHHHHHHHHHHCT-HHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHcCCHHHHHHHHHHHHHh
Confidence 3667888888888888888888885544
No 305
>KOG3783 consensus Uncharacterized conserved protein [Function unknown]
Probab=95.72 E-value=0.74 Score=48.66 Aligned_cols=61 Identities=20% Similarity=0.092 Sum_probs=30.7
Q ss_pred HHHHHHHHHccCHHHHHHHHHHHHhhc---CC----CHHHHHHHHHHHHHcCC-HHHHHHhcCCCCCCC
Q 003563 317 LKLAECYLSLKERAHAIMFFYKALDRF---ED----NIDARLTLASLLLEEAK-EEEAITLLSPPKDLD 377 (810)
Q Consensus 317 ~~la~~~~~~g~~~~A~~~~~~al~~~---p~----~~~~~~~la~~~~~~g~-~~~A~~~~~~a~~~~ 377 (810)
+.+|.++..+|+...|..+|..+++.. .. -|-+++.+|.++..+|. ..++..++.+|.+..
T Consensus 453 lL~g~~lR~Lg~~~~a~~~f~i~~~~e~~~~~d~w~~PfA~YElA~l~~~~~g~~~e~~~~L~kAr~~~ 521 (546)
T KOG3783|consen 453 LLKGVILRNLGDSEVAPKCFKIQVEKESKRTEDLWAVPFALYELALLYWDLGGGLKEARALLLKAREYA 521 (546)
T ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHHHHhhccccccccHHHHHHHHHHHhcccChHHHHHHHHHHHhhc
Confidence 344555555555555555555554221 11 14455555555555555 555555555555444
No 306
>PRK10941 hypothetical protein; Provisional
Probab=95.72 E-value=0.11 Score=51.20 Aligned_cols=69 Identities=14% Similarity=0.155 Sum_probs=56.0
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHhhCCCCCCh
Q 003563 137 LRIHLASFYVEIGDYEKAAESYEQIQKLFPDNVDATKTGAQLFLKCGQTARSIGILEEYLKVHPSDADL 205 (810)
Q Consensus 137 ~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~ 205 (810)
.+.++-.+|.+.++++.|+.+.+.++.+.|+++.-+...|.+|.++|.+..|..-++..++..|+++..
T Consensus 183 ml~nLK~~~~~~~~~~~AL~~~e~ll~l~P~dp~e~RDRGll~~qL~c~~~A~~DL~~fl~~~P~dp~a 251 (269)
T PRK10941 183 LLDTLKAALMEEKQMELALRASEALLQFDPEDPYEIRDRGLIYAQLDCEHVALSDLSYFVEQCPEDPIS 251 (269)
T ss_pred HHHHHHHHHHHcCcHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCcHHHHHHHHHHHHhCCCchhH
Confidence 345666777888888888888888888888888888888888888888888888888888888888764
No 307
>PF14561 TPR_20: Tetratricopeptide repeat; PDB: 3QOU_A 2R5S_A 3QDN_B.
Probab=95.67 E-value=0.14 Score=40.79 Aligned_cols=64 Identities=22% Similarity=0.181 Sum_probs=34.6
Q ss_pred HHHHHHHHHhCCCChHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCCC--HHHHHHHHHHHHHcCC
Q 003563 53 ISLLKEVVRLSPNLPETYNTLGLAHSALGNHKSAFDFYVIAAHLSPKD--SALWKQLLTFAVQKGD 116 (810)
Q Consensus 53 ~~~~~~~l~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~p~~--~~~~~~la~~~~~~g~ 116 (810)
+..+++.+..+|++.++.+.+|..+...|++++|++.+..++..+++. ..+...+-.++...|.
T Consensus 8 ~~al~~~~a~~P~D~~ar~~lA~~~~~~g~~e~Al~~Ll~~v~~dr~~~~~~ar~~ll~~f~~lg~ 73 (90)
T PF14561_consen 8 IAALEAALAANPDDLDARYALADALLAAGDYEEALDQLLELVRRDRDYEDDAARKRLLDIFELLGP 73 (90)
T ss_dssp HHHHHHHHHHSTT-HHHHHHHHHHHHHTT-HHHHHHHHHHHHCC-TTCCCCHHHHHHHHHHHHH-T
T ss_pred HHHHHHHHHcCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCccccccHHHHHHHHHHHHcCC
Confidence 445556666666666666666666666666666666666666665543 3333333333333333
No 308
>smart00028 TPR Tetratricopeptide repeats. Repeats present in 4 or more copies in proteins. Contain a minimum of 34 amino acids each and self-associate via a "knobs and holes" mechanism.
Probab=95.65 E-value=0.018 Score=35.42 Aligned_cols=32 Identities=41% Similarity=0.608 Sum_probs=29.3
Q ss_pred hhhhhHHHHHHHhChhhHHHHHHHHHhccccc
Q 003563 723 EALYNIARACHHVGLVSLAASYYEKVLAIKEK 754 (810)
Q Consensus 723 e~~ynlgr~~~~lg~~~~Ai~~Y~~vL~~~~~ 754 (810)
.+++++|.++...|.+..|+.+|+++++..|+
T Consensus 2 ~~~~~~a~~~~~~~~~~~a~~~~~~~~~~~~~ 33 (34)
T smart00028 2 EALYNLGNAYLKLGDYDEALEYYEKALELDPN 33 (34)
T ss_pred hHHHHHHHHHHHHhhHHHHHHHHHHHHccCCC
Confidence 57899999999999999999999999988653
No 309
>PRK15180 Vi polysaccharide biosynthesis protein TviD; Provisional
Probab=95.58 E-value=0.27 Score=50.56 Aligned_cols=128 Identities=15% Similarity=0.081 Sum_probs=93.3
Q ss_pred HHHHHcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCHHHH
Q 003563 41 SLQYAYGNFEQAISLLKEVVRLSPNLPETYNTLGLAHSALGNHKSAFDFYVIAAHLSPKDSALWKQLLTFAVQKGDTAQA 120 (810)
Q Consensus 41 ~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~p~~~~~~~~la~~~~~~g~~~~A 120 (810)
......||.-.|-.-+..+++..|.+|......+.+....|+|+.|...+.-+-..-.....+...+-......|++++|
T Consensus 297 ~k~~~~gd~~aas~~~~~~lr~~~~~p~~i~l~~~i~~~lg~ye~~~~~~s~~~~~~~s~~~~~~~~~r~~~~l~r~~~a 376 (831)
T PRK15180 297 TKQLADGDIIAASQQLFAALRNQQQDPVLIQLRSVIFSHLGYYEQAYQDISDVEKIIGTTDSTLRCRLRSLHGLARWREA 376 (831)
T ss_pred HHHhhccCHHHHHHHHHHHHHhCCCCchhhHHHHHHHHHhhhHHHHHHHhhchhhhhcCCchHHHHHHHhhhchhhHHHH
Confidence 34467889988888888899988888888888889999999999888877655443333344455555666777888888
Q ss_pred HHHHHHHHHcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC
Q 003563 121 MYYIRQAIRAEPKDISLRIHLASFYVEIGDYEKAAESYEQIQKLFPDN 168 (810)
Q Consensus 121 ~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~ 168 (810)
.....-.+...-++++....-+.....+|-++++...+++++.++|..
T Consensus 377 ~s~a~~~l~~eie~~ei~~iaa~sa~~l~~~d~~~~~wk~~~~~~~~~ 424 (831)
T PRK15180 377 LSTAEMMLSNEIEDEEVLTVAAGSADALQLFDKSYHYWKRVLLLNPET 424 (831)
T ss_pred HHHHHHHhccccCChhheeeecccHHHHhHHHHHHHHHHHHhccCChh
Confidence 877777776555666665555556666777778888887777777654
No 310
>PF04781 DUF627: Protein of unknown function (DUF627); InterPro: IPR006866 This domain represents the N-terminal region of several plant proteins of unknown function.
Probab=95.57 E-value=0.13 Score=42.02 Aligned_cols=104 Identities=18% Similarity=0.166 Sum_probs=71.5
Q ss_pred HHHHHHHcCChHHHHHHHHHHHhcCCCCHHHH---HHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHcC
Q 003563 73 LGLAHSALGNHKSAFDFYVIAAHLSPKDSALW---KQLLTFAVQKGDTAQAMYYIRQAIRAEPKDISLRIHLASFYVEIG 149 (810)
Q Consensus 73 l~~~~~~~g~~~~A~~~~~~a~~~~p~~~~~~---~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g 149 (810)
++.-++..|++-+|++..+..+...+++...| ...|.++ ++.+...+..+....+
T Consensus 2 ~A~~~~~rGnhiKAL~iied~i~~h~~~~~~~~lh~~QG~if------------~~lA~~ten~d~k~~y---------- 59 (111)
T PF04781_consen 2 KAKDYFARGNHIKALEIIEDLISRHGEDESSWLLHRLQGTIF------------YKLAKKTENPDVKFRY---------- 59 (111)
T ss_pred hHHHHHHccCHHHHHHHHHHHHHHccCCCchHHHHHHHhHHH------------HHHHHhccCchHHHHH----------
Confidence 35566777888888888887777776665433 2233333 2333333222222222
Q ss_pred CHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHhhC
Q 003563 150 DYEKAAESYEQIQKLFPDNVDATKTGAQLFLKCGQTARSIGILEEYLKVH 199 (810)
Q Consensus 150 ~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~ 199 (810)
.-.++++|.++..+.|.....++.+|.-+-....|+++....++++...
T Consensus 60 -Ll~sve~~s~a~~Lsp~~A~~L~~la~~l~s~~~Ykk~v~kak~~Lsv~ 108 (111)
T PF04781_consen 60 -LLGSVECFSRAVELSPDSAHSLFELASQLGSVKYYKKAVKKAKRGLSVT 108 (111)
T ss_pred -HHHhHHHHHHHhccChhHHHHHHHHHHHhhhHHHHHHHHHHHHHHhccc
Confidence 2357889999999999999999999998888888999999999988753
No 311
>PF14853 Fis1_TPR_C: Fis1 C-terminal tetratricopeptide repeat; PDB: 1IYG_A 1PC2_A 1NZN_A 3UUX_C 1Y8M_A 2PQR_A 2PQN_A 3O48_A.
Probab=95.52 E-value=0.086 Score=36.87 Aligned_cols=43 Identities=21% Similarity=0.023 Sum_probs=33.8
Q ss_pred HHHHHHHHHHHHccCHHHHHHHHHHHHhhcCCCHHHHHHHHHH
Q 003563 314 YLYLKLAECYLSLKERAHAIMFFYKALDRFEDNIDARLTLASL 356 (810)
Q Consensus 314 ~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~ 356 (810)
+.++.+|..+.++|+|++|..+.+.+++..|+|..+......+
T Consensus 2 d~lY~lAig~ykl~~Y~~A~~~~~~lL~~eP~N~Qa~~L~~~i 44 (53)
T PF14853_consen 2 DCLYYLAIGHYKLGEYEKARRYCDALLEIEPDNRQAQSLKELI 44 (53)
T ss_dssp HHHHHHHHHHHHTT-HHHHHHHHHHHHHHTTS-HHHHHHHHHH
T ss_pred hhHHHHHHHHHHhhhHHHHHHHHHHHHhhCCCcHHHHHHHHHH
Confidence 3567888899999999999999999999999998877654443
No 312
>KOG3824 consensus Huntingtin interacting protein HYPE [General function prediction only]
Probab=95.52 E-value=0.048 Score=52.49 Aligned_cols=72 Identities=18% Similarity=0.247 Sum_probs=64.6
Q ss_pred HHHHHHHcCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHH
Q 003563 107 LLTFAVQKGDTAQAMYYIRQAIRAEPKDISLRIHLASFYVEIGDYEKAAESYEQIQKLFPDNVDATKTGAQL 178 (810)
Q Consensus 107 la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~la~~ 178 (810)
.|.-....|+.++|...|+.++.+.|++++++..+|......++.-+|-.+|-+++.+.|.+.+++.+.+..
T Consensus 122 ~A~~~~~~Gk~ekA~~lfeHAlalaP~~p~~L~e~G~f~E~~~~iv~ADq~Y~~ALtisP~nseALvnR~RT 193 (472)
T KOG3824|consen 122 AAGRSRKDGKLEKAMTLFEHALALAPTNPQILIEMGQFREMHNEIVEADQCYVKALTISPGNSEALVNRART 193 (472)
T ss_pred HHHHHHhccchHHHHHHHHHHHhcCCCCHHHHHHHhHHHHhhhhhHhhhhhhheeeeeCCCchHHHhhhhcc
Confidence 344456789999999999999999999999999999999999999999999999999999999988877654
No 313
>KOG1464 consensus COP9 signalosome, subunit CSN2 [Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=95.49 E-value=1.4 Score=42.00 Aligned_cols=82 Identities=12% Similarity=0.088 Sum_probs=43.8
Q ss_pred HHHHHHHHHHHcCCcHHHHHHHHHHHhccC-CCCHHHHHH----HHHHHHHccCHHHHHHHHHHHHhhc-----CCCHHH
Q 003563 280 LITEVADTLMSLGHSNSALKYYHFLETNAG-TDNGYLYLK----LAECYLSLKERAHAIMFFYKALDRF-----EDNIDA 349 (810)
Q Consensus 280 ~~~~la~~~~~~~~~~~A~~~~~~~~~~~~-~~~~~~~~~----la~~~~~~g~~~~A~~~~~~al~~~-----p~~~~~ 349 (810)
++..-...|..+++-.+-..+|++++.... -..|.+.-. =|..+.+.|++++|-..|-.+.+.. |.....
T Consensus 193 iYAlEIQmYT~qKnNKkLK~lYeqalhiKSAIPHPlImGvIRECGGKMHlreg~fe~AhTDFFEAFKNYDEsGspRRttC 272 (440)
T KOG1464|consen 193 IYALEIQMYTEQKNNKKLKALYEQALHIKSAIPHPLIMGVIRECGGKMHLREGEFEKAHTDFFEAFKNYDESGSPRRTTC 272 (440)
T ss_pred hHhhHhhhhhhhcccHHHHHHHHHHHHhhccCCchHHHhHHHHcCCccccccchHHHHHhHHHHHHhcccccCCcchhHH
Confidence 344444555555555555556665543311 123333222 2455677788888877776666542 222232
Q ss_pred --HHHHHHHHHHcC
Q 003563 350 --RLTLASLLLEEA 361 (810)
Q Consensus 350 --~~~la~~~~~~g 361 (810)
+.-|+.++.+.|
T Consensus 273 LKYLVLANMLmkS~ 286 (440)
T KOG1464|consen 273 LKYLVLANMLMKSG 286 (440)
T ss_pred HHHHHHHHHHHHcC
Confidence 345777777766
No 314
>PF12968 DUF3856: Domain of Unknown Function (DUF3856); InterPro: IPR024552 This domain of unknown function is found in a small group of tetratricopeptide-like proteins, which includes the uncharacterised protein Q8KAL8 from SWISSPROT. The structure of Q8KAL8 is known and belongs to the SCOP all alpha class, TPR-like superfamily, CT2138-like family.; PDB: 2HR2_D.
Probab=95.44 E-value=0.5 Score=38.81 Aligned_cols=60 Identities=20% Similarity=0.139 Sum_probs=43.1
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC------------ChHHHHHHHHHHHHcCChHHHHHHHHHHH
Q 003563 35 KMLGEASLQYAYGNFEQAISLLKEVVRLSPN------------LPETYNTLGLAHSALGNHKSAFDFYVIAA 94 (810)
Q Consensus 35 ~~l~~a~~~~~~g~~~~A~~~~~~~l~~~p~------------~~~~~~~l~~~~~~~g~~~~A~~~~~~a~ 94 (810)
..+..|...+..|-|++|...++++.+.... ++-.+..|+..+..+|+|++++..-.+++
T Consensus 11 ~aLs~ae~ql~~g~~~eAa~s~r~AM~~srtiP~eEaFDh~GFDA~chA~Ls~A~~~Lgry~e~L~sA~~aL 82 (144)
T PF12968_consen 11 MALSDAERQLQDGAYEEAAASCRKAMEVSRTIPAEEAFDHDGFDAFCHAGLSGALAGLGRYDECLQSADRAL 82 (144)
T ss_dssp HHHHHHHHHHHHT-HHHHHHHHHHHHHHHTTS-TTS---HHHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhhhHHHHHHHHHHHHHHhccCChHhhcccccHHHHHHHHHHHHHHhhccHHHHHHHHHHHH
Confidence 3467788888899999999999999875322 23456777888888888888777666655
No 315
>KOG2396 consensus HAT (Half-A-TPR) repeat-containing protein [General function prediction only]
Probab=95.42 E-value=4.2 Score=42.76 Aligned_cols=97 Identities=16% Similarity=0.091 Sum_probs=64.9
Q ss_pred hHhHHHHHHHHHHHcCCcHHHHHHHHHHHhccCCCCHHHHHHHHHHHHH--ccCHHHHHHHHHHHHhhcCCCHHHHHHHH
Q 003563 277 HADLITEVADTLMSLGHSNSALKYYHFLETNAGTDNGYLYLKLAECYLS--LKERAHAIMFFYKALDRFEDNIDARLTLA 354 (810)
Q Consensus 277 ~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~la~~~~~--~g~~~~A~~~~~~al~~~p~~~~~~~~la 354 (810)
....-..+-..+.+.|-+.+|...|...... +|.....+..+...-.. .-+...+..+|+.++.....+++.|...-
T Consensus 459 ~~tl~s~~l~~~~e~~~~~~ark~y~~l~~l-pp~sl~l~r~miq~e~~~~sc~l~~~r~~yd~a~~~fg~d~~lw~~y~ 537 (568)
T KOG2396|consen 459 SVTLKSKYLDWAYESGGYKKARKVYKSLQEL-PPFSLDLFRKMIQFEKEQESCNLANIREYYDRALREFGADSDLWMDYM 537 (568)
T ss_pred eeehhHHHHHHHHHhcchHHHHHHHHHHHhC-CCccHHHHHHHHHHHhhHhhcCchHHHHHHHHHHHHhCCChHHHHHHH
Confidence 4444555666777788888888888887766 55565555544443222 22377788888888888878888887776
Q ss_pred HHHHHcCCHHHHHHhcCCCC
Q 003563 355 SLLLEEAKEEEAITLLSPPK 374 (810)
Q Consensus 355 ~~~~~~g~~~~A~~~~~~a~ 374 (810)
..-...|+.+.+-.++.+|.
T Consensus 538 ~~e~~~g~~en~~~~~~ra~ 557 (568)
T KOG2396|consen 538 KEELPLGRPENCGQIYWRAM 557 (568)
T ss_pred HhhccCCCcccccHHHHHHH
Confidence 66667777666655555444
No 316
>PF09613 HrpB1_HrpK: Bacterial type III secretion protein (HrpB1_HrpK); InterPro: IPR013394 This family of proteins is encoded by genes found within type III secretion operons in a limited range of species including Xanthomonas, Ralstonia and Burkholderia.
Probab=95.41 E-value=0.29 Score=43.30 Aligned_cols=78 Identities=19% Similarity=0.101 Sum_probs=36.9
Q ss_pred HHHHHHHcCChHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHcCC
Q 003563 73 LGLAHSALGNHKSAFDFYVIAAHLSPKDSALWKQLLTFAVQKGDTAQAMYYIRQAIRAEPKDISLRIHLASFYVEIGD 150 (810)
Q Consensus 73 l~~~~~~~g~~~~A~~~~~~a~~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~ 150 (810)
+..+-...++.+++...+...--+.|..++.-..-|.++...|+|.+|+..++.+....|..+.+--.++.|+..+|+
T Consensus 16 ~~~~al~~~~~~D~e~lL~ALrvLRP~~~e~~~~~~~l~i~r~~w~dA~rlLr~l~~~~~~~p~~kALlA~CL~~~~D 93 (160)
T PF09613_consen 16 VLSVALRLGDPDDAEALLDALRVLRPEFPELDLFDGWLHIVRGDWDDALRLLRELEERAPGFPYAKALLALCLYALGD 93 (160)
T ss_pred HHHHHHccCChHHHHHHHHHHHHhCCCchHHHHHHHHHHHHhCCHHHHHHHHHHHhccCCCChHHHHHHHHHHHHcCC
Confidence 333334444444444444444444455444444444455555555555555555444444444444444444444444
No 317
>PRK10941 hypothetical protein; Provisional
Probab=95.22 E-value=0.24 Score=48.82 Aligned_cols=60 Identities=15% Similarity=0.047 Sum_probs=34.4
Q ss_pred HHHHHHHHHcCChHHHHHHHHHHHhhCCCCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Q 003563 173 KTGAQLFLKCGQTARSIGILEEYLKVHPSDADLSVIDLLVAILMENNAYEKTLQHIEHAQIV 234 (810)
Q Consensus 173 ~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~ 234 (810)
.++-.++.+.++++.|+.+.+.++...|+++. -+...|.+|.+.|.+..|..-++..++.
T Consensus 185 ~nLK~~~~~~~~~~~AL~~~e~ll~l~P~dp~--e~RDRGll~~qL~c~~~A~~DL~~fl~~ 244 (269)
T PRK10941 185 DTLKAALMEEKQMELALRASEALLQFDPEDPY--EIRDRGLIYAQLDCEHVALSDLSYFVEQ 244 (269)
T ss_pred HHHHHHHHHcCcHHHHHHHHHHHHHhCCCCHH--HHHHHHHHHHHcCCcHHHHHHHHHHHHh
Confidence 34444555566666666666666666665553 3445566666666666666666555555
No 318
>PF14853 Fis1_TPR_C: Fis1 C-terminal tetratricopeptide repeat; PDB: 1IYG_A 1PC2_A 1NZN_A 3UUX_C 1Y8M_A 2PQR_A 2PQN_A 3O48_A.
Probab=95.07 E-value=0.13 Score=36.04 Aligned_cols=34 Identities=32% Similarity=0.392 Sum_probs=15.7
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHH
Q 003563 138 RIHLASFYVEIGDYEKAAESYEQIQKLFPDNVDA 171 (810)
Q Consensus 138 ~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~ 171 (810)
++.+|..+.++|+|++|..+.+.+++..|++..+
T Consensus 4 lY~lAig~ykl~~Y~~A~~~~~~lL~~eP~N~Qa 37 (53)
T PF14853_consen 4 LYYLAIGHYKLGEYEKARRYCDALLEIEPDNRQA 37 (53)
T ss_dssp HHHHHHHHHHTT-HHHHHHHHHHHHHHTTS-HHH
T ss_pred HHHHHHHHHHhhhHHHHHHHHHHHHhhCCCcHHH
Confidence 3444444455555555555555555555554443
No 319
>KOG1538 consensus Uncharacterized conserved protein WDR10, contains WD40 repeats [General function prediction only]
Probab=94.96 E-value=1.2 Score=47.74 Aligned_cols=254 Identities=12% Similarity=0.074 Sum_probs=127.1
Q ss_pred HHHHcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCHHHHH
Q 003563 42 LQYAYGNFEQAISLLKEVVRLSPNLPETYNTLGLAHSALGNHKSAFDFYVIAAHLSPKDSALWKQLLTFAVQKGDTAQAM 121 (810)
Q Consensus 42 ~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~p~~~~~~~~la~~~~~~g~~~~A~ 121 (810)
.+...|.+++|...---.+. ..-|..++.-....=+++-|.+.|.+.-.+ ..+..++.+-.++
T Consensus 565 q~Ieag~f~ea~~iaclgVv-----~~DW~~LA~~ALeAL~f~~ARkAY~rVRdl-----~~L~li~EL~~~k------- 627 (1081)
T KOG1538|consen 565 QYIERGLFKEAYQIACLGVT-----DTDWRELAMEALEALDFETARKAYIRVRDL-----RYLELISELEERK------- 627 (1081)
T ss_pred hhhhccchhhhhccccccee-----cchHHHHHHHHHhhhhhHHHHHHHHHHhcc-----HHHHHHHHHHHHH-------
Confidence 45666777666543221111 123556666666666677777777665322 1111111111110
Q ss_pred HHHHHHHHcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC----CHHHHHHHHHHHHHcCChHHHHHHHHHHHh
Q 003563 122 YYIRQAIRAEPKDISLRIHLASFYVEIGDYEKAAESYEQIQKLFPD----NVDATKTGAQLFLKCGQTARSIGILEEYLK 197 (810)
Q Consensus 122 ~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~----~~~~~~~la~~~~~~g~~~~A~~~~~~~l~ 197 (810)
+ ....| --..+|.++.-.|++.+|.+.|.+.-..+.. ..--.+.+++-++..|..++-..+.++-.+
T Consensus 628 -------~-rge~P-~~iLlA~~~Ay~gKF~EAAklFk~~G~enRAlEmyTDlRMFD~aQE~~~~g~~~eKKmL~RKRA~ 698 (1081)
T KOG1538|consen 628 -------K-RGETP-NDLLLADVFAYQGKFHEAAKLFKRSGHENRALEMYTDLRMFDYAQEFLGSGDPKEKKMLIRKRAD 698 (1081)
T ss_pred -------h-cCCCc-hHHHHHHHHHhhhhHHHHHHHHHHcCchhhHHHHHHHHHHHHHHHHHhhcCChHHHHHHHHHHHH
Confidence 0 01111 1233455555566666666655542111000 001133456666666666665555554322
Q ss_pred h--CCCCCChHHHHHHHHHHHHcCCHHHHHHHHHH------HHHHhcCCCCCcHHHHHHHHHHHHhcCCHHHHHHHHHHh
Q 003563 198 V--HPSDADLSVIDLLVAILMENNAYEKTLQHIEH------AQIVRFSGKELPLKLKVKAGICYLRLGNMEKAEILFADL 269 (810)
Q Consensus 198 ~--~p~~~~~~~~~~la~~~~~~g~~~~A~~~~~~------~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~ 269 (810)
- +-+.+. .-++++...|+.++|+...-. ++++...-+....+.....+..+.....+.-|-+.|.++
T Consensus 699 WAr~~kePk-----aAAEmLiSaGe~~KAi~i~~d~gW~d~lidI~rkld~~ere~l~~~a~ylk~l~~~gLAaeIF~k~ 773 (1081)
T KOG1538|consen 699 WARNIKEPK-----AAAEMLISAGEHVKAIEICGDHGWVDMLIDIARKLDKAEREPLLLCATYLKKLDSPGLAAEIFLKM 773 (1081)
T ss_pred HhhhcCCcH-----HHHHHhhcccchhhhhhhhhcccHHHHHHHHHhhcchhhhhHHHHHHHHHhhccccchHHHHHHHh
Confidence 1 222222 356777778888877765422 222211112223344445555555666666666666665
Q ss_pred hccCCchhHhHHHHHHHHHHHcCCcHHHHHHHHHHHhccCCCCHHHHHHHHHHHHHccCHHHHHHHHHHH
Q 003563 270 QWKNAIDHADLITEVADTLMSLGHSNSALKYYHFLETNAGTDNGYLYLKLAECYLSLKERAHAIMFFYKA 339 (810)
Q Consensus 270 ~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a 339 (810)
-. ...+...+...+++++|..+.++.- .-.+.+++-.|..+....++++|.+.|-++
T Consensus 774 gD---------~ksiVqlHve~~~W~eAFalAe~hP----e~~~dVy~pyaqwLAE~DrFeEAqkAfhkA 830 (1081)
T KOG1538|consen 774 GD---------LKSLVQLHVETQRWDEAFALAEKHP----EFKDDVYMPYAQWLAENDRFEEAQKAFHKA 830 (1081)
T ss_pred cc---------HHHHhhheeecccchHhHhhhhhCc----cccccccchHHHHhhhhhhHHHHHHHHHHh
Confidence 21 1234556677788888876654322 224557777788888888888887766554
No 320
>COG3914 Spy Predicted O-linked N-acetylglucosamine transferase, SPINDLY family [Posttranslational modification, protein turnover, chaperones]
Probab=94.63 E-value=1.3 Score=47.36 Aligned_cols=127 Identities=19% Similarity=0.161 Sum_probs=76.0
Q ss_pred HHHHHHHHHHhCCCChHHHHH--HHHHHHHcCChHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHH-HH
Q 003563 52 AISLLKEVVRLSPNLPETYNT--LGLAHSALGNHKSAFDFYVIAAHLSPKDSALWKQLLTFAVQKGDTAQAMYYIRQ-AI 128 (810)
Q Consensus 52 A~~~~~~~l~~~p~~~~~~~~--l~~~~~~~g~~~~A~~~~~~a~~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~-al 128 (810)
++..+...+..+|.++..+.. +...+...++...+.-.+..++..+|.+..+...++......|....+...+.. +.
T Consensus 50 ~~~a~~~~~~~~~~~~~llla~~lsi~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~L~~ale~~~~~~~~~~~~~~~a~ 129 (620)
T COG3914 50 AIYALLLGIAINDVNPELLLAAFLSILLAPLADSTLAFLAKRIPLSVNPENCPAVQNLAAALELDGLQFLALADISEIAE 129 (620)
T ss_pred HHHHHHccCccCCCCHHHHHHHHHHhhccccccchhHHHHHhhhHhcCcccchHHHHHHHHHHHhhhHHHHHHHHHHHHH
Confidence 555555555566666655333 355555566666666666777777777777777776666666555554444444 55
Q ss_pred HcCCCCHHHHHHH------HHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHH
Q 003563 129 RAEPKDISLRIHL------ASFYVEIGDYEKAAESYEQIQKLFPDNVDATKTGAQL 178 (810)
Q Consensus 129 ~~~p~~~~~~~~l------a~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~la~~ 178 (810)
...|.+......+ +.....+|+..++....+++....|.++.+...+...
T Consensus 130 ~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~l~~~~d~~p~~~~~~~~~~~~ 185 (620)
T COG3914 130 WLSPDNAEFLGHLIRFYQLGRYLKLLGRTAEAELALERAVDLLPKYPRVLGALMTA 185 (620)
T ss_pred hcCcchHHHHhhHHHHHHHHHHHHHhccHHHHHHHHHHHHHhhhhhhhhHhHHHHH
Confidence 5666665554443 6666666666666666777766666665554444333
No 321
>KOG1463 consensus 26S proteasome regulatory complex, subunit RPN6/PSMD11 [Posttranslational modification, protein turnover, chaperones]
Probab=94.58 E-value=5.4 Score=39.71 Aligned_cols=280 Identities=13% Similarity=0.065 Sum_probs=133.5
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHh--CCCC--------hHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCCCHHHHH
Q 003563 36 MLGEASLQYAYGNFEQAISLLKEVVRL--SPNL--------PETYNTLGLAHSALGNHKSAFDFYVIAAHLSPKDSALWK 105 (810)
Q Consensus 36 ~l~~a~~~~~~g~~~~A~~~~~~~l~~--~p~~--------~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~p~~~~~~~ 105 (810)
.+..+.......++++++..+..++.. .|.+ ......+|..+...|+.++-.......- ..|.
T Consensus 7 ~~e~~~~~~~~~~~~~~~~il~~vl~~~~~~~s~e~~i~~kE~~Ilel~~ll~~~~~~~~lr~li~~~R-------pf~~ 79 (411)
T KOG1463|consen 7 LLERAQNLVSVNQVEEAINILKSVLNKAQGASSDEARIKEKEQSILELGDLLAKEGDAEELRDLITSLR-------PFLS 79 (411)
T ss_pred HHHHHHHhcccchhhhhHHHHHHHhhhhccccCCHHHHHHHHHHHHHHHHHHHhccchhHHHHHHHHHH-------HHHH
Confidence 367778888888899999999999874 2221 2356788899999998877655554322 1222
Q ss_pred HHHHHHHHcCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC------HHHHHHHHHHH
Q 003563 106 QLLTFAVQKGDTAQAMYYIRQAIRAEPKDISLRIHLASFYVEIGDYEKAAESYEQIQKLFPDN------VDATKTGAQLF 179 (810)
Q Consensus 106 ~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~------~~~~~~la~~~ 179 (810)
.++. .+|.+..+..++..+..+... +.-+..+..+++..... ...-..+..+|
T Consensus 80 ~v~K--------akaaKlvR~Lvd~~~~~~~~~-------------~~~i~l~~~cIeWA~~ekRtFLRq~Learli~Ly 138 (411)
T KOG1463|consen 80 SVSK--------AKAAKLVRSLVDMFLKIDDGT-------------GDQIELCTECIEWAKREKRTFLRQSLEARLIRLY 138 (411)
T ss_pred Hhhh--------HHHHHHHHHHHHHHccCCCCc-------------chHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHH
Confidence 1111 122233333333222111100 01111111111110000 01122445555
Q ss_pred HHcCChHHHHHHHHHHHh----hCCCCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhc---CCCCCcHHHHHHHHHH
Q 003563 180 LKCGQTARSIGILEEYLK----VHPSDADLSVIDLLVAILMENNAYEKTLQHIEHAQIVRF---SGKELPLKLKVKAGIC 252 (810)
Q Consensus 180 ~~~g~~~~A~~~~~~~l~----~~p~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~---~~~~~~~~~~~~la~~ 252 (810)
...++|.+|+......+. .+....-..++..-...|....+..+|...+..+..... .++.....+-..-|.+
T Consensus 139 ~d~~~YteAlaL~~~L~rElKKlDDK~lLvev~llESK~y~~l~Nl~KakasLTsART~AnaiYcpPqlQa~lDLqSGIl 218 (411)
T KOG1463|consen 139 NDTKRYTEALALINDLLRELKKLDDKILLVEVHLLESKAYHALRNLPKAKASLTSARTTANAIYCPPQLQATLDLQSGIL 218 (411)
T ss_pred HhhHHHHHHHHHHHHHHHHHHhcccccceeeehhhhhHHHHHHhcchhHHHHHHHHHHhhcccccCHHHHHHHHHhccce
Confidence 556666665555444332 122111112333444555555555555555554432210 0011222333334555
Q ss_pred HHhcCCHHHHHHHHHHhhccCCc-----hhHhHHHHHHHHHHHcCCcHHHHHHHH--HHHhccCCCCHHHHHHHHHHHHH
Q 003563 253 YLRLGNMEKAEILFADLQWKNAI-----DHADLITEVADTLMSLGHSNSALKYYH--FLETNAGTDNGYLYLKLAECYLS 325 (810)
Q Consensus 253 ~~~~g~~~~A~~~~~~~~~~~~~-----~~~~~~~~la~~~~~~~~~~~A~~~~~--~~~~~~~~~~~~~~~~la~~~~~ 325 (810)
+....+|..|..+|-++.+.... .....+..+-.+-...+..++--.++. .++.. ...+..+....|.++..
T Consensus 219 ha~ekDykTafSYFyEAfEgf~s~~~~v~A~~sLKYMlLcKIMln~~ddv~~lls~K~~l~y-~g~~i~AmkavAeA~~n 297 (411)
T KOG1463|consen 219 HAAEKDYKTAFSYFYEAFEGFDSLDDDVKALTSLKYMLLCKIMLNLPDDVAALLSAKLALKY-AGRDIDAMKAVAEAFGN 297 (411)
T ss_pred eecccccchHHHHHHHHHccccccCCcHHHHHHHHHHHHHHHHhcCHHHHHHHHhhHHHHhc-cCcchHHHHHHHHHhcC
Confidence 55556666666666665543221 111122222333334444444443333 23332 44566677777777654
Q ss_pred --ccCHHHHHHHHHHHHhhcC
Q 003563 326 --LKERAHAIMFFYKALDRFE 344 (810)
Q Consensus 326 --~g~~~~A~~~~~~al~~~p 344 (810)
+.+|+.|...|..-+..+|
T Consensus 298 RSLkdF~~AL~~yk~eL~~D~ 318 (411)
T KOG1463|consen 298 RSLKDFEKALADYKKELAEDP 318 (411)
T ss_pred CcHHHHHHHHHHhHHHHhcCh
Confidence 4678889988888877665
No 322
>KOG3364 consensus Membrane protein involved in organellar division [Cell wall/membrane/envelope biogenesis]
Probab=94.58 E-value=0.68 Score=39.22 Aligned_cols=81 Identities=15% Similarity=0.027 Sum_probs=60.4
Q ss_pred hHhHHHHHHHHHHHcCC---cHHHHHHHHHHHhccCC-CCHHHHHHHHHHHHHccCHHHHHHHHHHHHhhcCCCHHHHHH
Q 003563 277 HADLITEVADTLMSLGH---SNSALKYYHFLETNAGT-DNGYLYLKLAECYLSLKERAHAIMFFYKALDRFEDNIDARLT 352 (810)
Q Consensus 277 ~~~~~~~la~~~~~~~~---~~~A~~~~~~~~~~~~~-~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~ 352 (810)
.....+.+++++....+ ..+.+.+++.+....+| ..-+..+.++..+.+.++|+.++.+.+..++..|+|.++...
T Consensus 31 s~~s~f~lAwaLV~S~~~~dv~~GI~iLe~l~~~~~~~~rRe~lyYLAvg~yRlkeY~~s~~yvd~ll~~e~~n~Qa~~L 110 (149)
T KOG3364|consen 31 SKQSQFNLAWALVRSRDTEDVQEGIVILEDLLKSAHPERRRECLYYLAVGHYRLKEYSKSLRYVDALLETEPNNRQALEL 110 (149)
T ss_pred hHHHHHHHHHHHHcccchHHHHHhHHHHHHHhhhcCcccchhhhhhhHHHHHHHhhHHHHHHHHHHHHhhCCCcHHHHHH
Confidence 55667888888876654 45678888888753233 356677888888899999999999999999999998877655
Q ss_pred HHHHH
Q 003563 353 LASLL 357 (810)
Q Consensus 353 la~~~ 357 (810)
--.+.
T Consensus 111 k~~ie 115 (149)
T KOG3364|consen 111 KETIE 115 (149)
T ss_pred HHHHH
Confidence 44333
No 323
>PF10602 RPN7: 26S proteasome subunit RPN7; InterPro: IPR019585 This entry represents the regulatory subunit RPN7 (known as the non-ATPase regulatory subunit 6 in higher eukaryotes) of the 26S proteasome. This entry also matches the evolutionarily related subunit 1 of the COP9 signalosome complex (CSN) from Arabidopsis []. The 26S proteasome plays a major role in ATP-dependent degradation of ubiquitinated proteins. Substrate specificity is conferred by the regulatory particle (RP), which can dissociate into stable lid and base subcomplexes. The regulatory subunit RPN7 is one of the lid subunits of the 26S proteasome and has been shown in Saccharomyces cerevisiae (Baker's yeast) to be required for structural integrity []. The COP9 signalosome is a conserved protein complex composed of eight subunits, where Individual subunits of the complex have been linked to various signal transduction pathways leading to gene expression and cell cycle control []. The overall organisation and the amino acid sequences of the COP9 signalosome subunits resemble the lid subcomplex of the 19 S regulatory particle for the 26 S proteasome []. COP9 subunit 1 (CSN1 or GPS1) of the COP9 complex is an essential subunit of the complex with regard to both structural integrity and functionality. The N-terminal region of subunit 1 (CSN1-N) can inhibit c-fos expression from either a transfected template or a chromosomal transgene (fos-lacZ), and may contain the activity domain that confers most of the repression functions of CSN1. The C-terminal region of subunit 1 (CSN1-C) allows integration of the protein into the COP9 signalosome.
Probab=94.57 E-value=0.67 Score=42.72 Aligned_cols=103 Identities=17% Similarity=0.169 Sum_probs=64.8
Q ss_pred HHHHHHHHHHHHcCChHHHHHHHHHHHhhCCCCCC-hHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhcCCCCCc--HHHH
Q 003563 170 DATKTGAQLFLKCGQTARSIGILEEYLKVHPSDAD-LSVIDLLVAILMENNAYEKTLQHIEHAQIVRFSGKELP--LKLK 246 (810)
Q Consensus 170 ~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~-~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~--~~~~ 246 (810)
.++..+|..|.+.|+.++|++.|.++.+....... ...+..+..+....+++..+..++.++........+.. ..+.
T Consensus 37 ~~~~~l~~~~~~~Gd~~~A~k~y~~~~~~~~~~~~~id~~l~~irv~i~~~d~~~v~~~i~ka~~~~~~~~d~~~~nrlk 116 (177)
T PF10602_consen 37 MALEDLADHYCKIGDLEEALKAYSRARDYCTSPGHKIDMCLNVIRVAIFFGDWSHVEKYIEKAESLIEKGGDWERRNRLK 116 (177)
T ss_pred HHHHHHHHHHHHhhhHHHHHHHHHHHhhhcCCHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHhccchHHHHHHHH
Confidence 45667777788888888888887776665432211 23556677777777888888887777766633211111 1234
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHhhcc
Q 003563 247 VKAGICYLRLGNMEKAEILFADLQWK 272 (810)
Q Consensus 247 ~~la~~~~~~g~~~~A~~~~~~~~~~ 272 (810)
...|..++..++|.+|-..|-.+...
T Consensus 117 ~~~gL~~l~~r~f~~AA~~fl~~~~t 142 (177)
T PF10602_consen 117 VYEGLANLAQRDFKEAAELFLDSLST 142 (177)
T ss_pred HHHHHHHHHhchHHHHHHHHHccCcC
Confidence 44566666777777777777766543
No 324
>smart00028 TPR Tetratricopeptide repeats. Repeats present in 4 or more copies in proteins. Contain a minimum of 34 amino acids each and self-associate via a "knobs and holes" mechanism.
Probab=94.55 E-value=0.064 Score=32.74 Aligned_cols=32 Identities=25% Similarity=0.382 Sum_probs=24.9
Q ss_pred HHHHHHHHHHHHccCHHHHHHHHHHHHhhcCC
Q 003563 314 YLYLKLAECYLSLKERAHAIMFFYKALDRFED 345 (810)
Q Consensus 314 ~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~ 345 (810)
.++..+|.++...|++++|+..++++++..|+
T Consensus 2 ~~~~~~a~~~~~~~~~~~a~~~~~~~~~~~~~ 33 (34)
T smart00028 2 EALYNLGNAYLKLGDYDEALEYYEKALELDPN 33 (34)
T ss_pred hHHHHHHHHHHHHhhHHHHHHHHHHHHccCCC
Confidence 45677788888888888888888888877765
No 325
>KOG1538 consensus Uncharacterized conserved protein WDR10, contains WD40 repeats [General function prediction only]
Probab=94.55 E-value=1.3 Score=47.66 Aligned_cols=79 Identities=13% Similarity=-0.031 Sum_probs=45.9
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHHhcCCCCCcHHHHHHHHHHHHhcCCHHHHHHHHHHhhccCCchhHhHHHHHHHH
Q 003563 208 IDLLVAILMENNAYEKTLQHIEHAQIVRFSGKELPLKLKVKAGICYLRLGNMEKAEILFADLQWKNAIDHADLITEVADT 287 (810)
Q Consensus 208 ~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~la~~ 287 (810)
+..++..+.....+.-|.+.|.+.-.. -.+..++...+++.+|..+.++. |+-.+++++-.|..
T Consensus 750 l~~~a~ylk~l~~~gLAaeIF~k~gD~------------ksiVqlHve~~~W~eAFalAe~h----Pe~~~dVy~pyaqw 813 (1081)
T KOG1538|consen 750 LLLCATYLKKLDSPGLAAEIFLKMGDL------------KSLVQLHVETQRWDEAFALAEKH----PEFKDDVYMPYAQW 813 (1081)
T ss_pred HHHHHHHHhhccccchHHHHHHHhccH------------HHHhhheeecccchHhHhhhhhC----ccccccccchHHHH
Confidence 334444444555555555555544322 12344566677788877776654 33345567777777
Q ss_pred HHHcCCcHHHHHHHH
Q 003563 288 LMSLGHSNSALKYYH 302 (810)
Q Consensus 288 ~~~~~~~~~A~~~~~ 302 (810)
+.+..++++|.+.|-
T Consensus 814 LAE~DrFeEAqkAfh 828 (1081)
T KOG1538|consen 814 LAENDRFEEAQKAFH 828 (1081)
T ss_pred hhhhhhHHHHHHHHH
Confidence 777777777766653
No 326
>KOG1839 consensus Uncharacterized protein CLU1/cluA/TIF31 involved in mitochondrial morphology/distribution, also found associated with eIF-3 [General function prediction only]
Probab=94.10 E-value=0.52 Score=55.19 Aligned_cols=165 Identities=16% Similarity=0.176 Sum_probs=111.8
Q ss_pred HHHHHHHHHHHHHHHcCCHHHHHH------HHHHH-HHhCCCChHHHHHHHHHHHHcCChHHHHHHHHHHHhcC------
Q 003563 31 PGVTKMLGEASLQYAYGNFEQAIS------LLKEV-VRLSPNLPETYNTLGLAHSALGNHKSAFDFYVIAAHLS------ 97 (810)
Q Consensus 31 ~~~~~~l~~a~~~~~~g~~~~A~~------~~~~~-l~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~------ 97 (810)
.+.......+......|.+.+|.+ ++... -...|..+..+..++.++...|+.++|+..-.++.-+.
T Consensus 930 ~~a~~~~e~gq~~~~e~~~~~~~~~~~slnl~~~v~~~~h~~~~~~~~~La~l~~~~~d~~~Ai~~~~ka~ii~eR~~g~ 1009 (1236)
T KOG1839|consen 930 SEAKDSPEQGQEALLEDGFSEAYELPESLNLLNNVMGVLHPEVASKYRSLAKLSNRLGDNQEAIAQQRKACIISERVLGK 1009 (1236)
T ss_pred chhhhhhhhhhhhhcccchhhhhhhhhhhhHHHHhhhhcchhHHHHHHHHHHHHhhhcchHHHHHhcccceeeechhccC
Confidence 456677888888889999998888 55533 23478888899999999999999999999888776442
Q ss_pred --CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHc--------CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC
Q 003563 98 --PKDSALWKQLLTFAVQKGDTAQAMYYIRQAIRA--------EPKDISLRIHLASFYVEIGDYEKAAESYEQIQKLFPD 167 (810)
Q Consensus 98 --p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~--------~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~ 167 (810)
|+....+..++...+..++...|+..+.++... .|.-.....+++.++...++++.|+.+.+.+......
T Consensus 1010 ds~~t~~~y~nlal~~f~~~~~~~al~~~~ra~~l~~Ls~ge~hP~~a~~~~nle~l~~~v~e~d~al~~le~A~a~~~~ 1089 (1236)
T KOG1839|consen 1010 DSPNTKLAYGNLALYEFAVKNLSGALKSLNRALKLKLLSSGEDHPPTALSFINLELLLLGVEEADTALRYLESALAKNKK 1089 (1236)
T ss_pred CCHHHHHHhhHHHHHHHhccCccchhhhHHHHHHhhccccCCCCCchhhhhhHHHHHHhhHHHHHHHHHHHHHHHHHHhh
Confidence 444556777777777777777788777777663 2333444566777777777777787777777764211
Q ss_pred --------CHHHHHHHHHHHHHcCChHHHHHHHHHH
Q 003563 168 --------NVDATKTGAQLFLKCGQTARSIGILEEY 195 (810)
Q Consensus 168 --------~~~~~~~la~~~~~~g~~~~A~~~~~~~ 195 (810)
....+..+++.+...+++..|....+..
T Consensus 1090 v~g~~~l~~~~~~~~~a~l~~s~~dfr~al~~ek~t 1125 (1236)
T KOG1839|consen 1090 VLGPKELETALSYHALARLFESMKDFRNALEHEKVT 1125 (1236)
T ss_pred hcCccchhhhhHHHHHHHHHhhhHHHHHHHHHHhhH
Confidence 1233444455555555555554444433
No 327
>COG3914 Spy Predicted O-linked N-acetylglucosamine transferase, SPINDLY family [Posttranslational modification, protein turnover, chaperones]
Probab=93.96 E-value=2.5 Score=45.30 Aligned_cols=124 Identities=17% Similarity=0.117 Sum_probs=98.6
Q ss_pred CChHHHHHHHHHHHhcCCCCHHHHHHH--HHHHHHcCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHcCCHHHHHHHH
Q 003563 81 GNHKSAFDFYVIAAHLSPKDSALWKQL--LTFAVQKGDTAQAMYYIRQAIRAEPKDISLRIHLASFYVEIGDYEKAAESY 158 (810)
Q Consensus 81 g~~~~A~~~~~~a~~~~p~~~~~~~~l--a~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~ 158 (810)
|...-++..+...+.++|.++..+... ...+...+....+...+..++..+|.+..+..+++......|....+...+
T Consensus 45 ~~~~~~~~a~~~~~~~~~~~~~llla~~lsi~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~L~~ale~~~~~~~~~~~~ 124 (620)
T COG3914 45 GLQALAIYALLLGIAINDVNPELLLAAFLSILLAPLADSTLAFLAKRIPLSVNPENCPAVQNLAAALELDGLQFLALADI 124 (620)
T ss_pred CchhHHHHHHHccCccCCCCHHHHHHHHHHhhccccccchhHHHHHhhhHhcCcccchHHHHHHHHHHHhhhHHHHHHHH
Confidence 344446667777777888888775443 666677788888999999999999999999999999888888777777666
Q ss_pred HH-HHHhCCCCHHHHHHH------HHHHHHcCChHHHHHHHHHHHhhCCCCCC
Q 003563 159 EQ-IQKLFPDNVDATKTG------AQLFLKCGQTARSIGILEEYLKVHPSDAD 204 (810)
Q Consensus 159 ~~-~l~~~p~~~~~~~~l------a~~~~~~g~~~~A~~~~~~~l~~~p~~~~ 204 (810)
.. +....|.+......+ +......|+..++...++++....|.++.
T Consensus 125 ~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~l~~~~d~~p~~~~ 177 (620)
T COG3914 125 SEIAEWLSPDNAEFLGHLIRFYQLGRYLKLLGRTAEAELALERAVDLLPKYPR 177 (620)
T ss_pred HHHHHhcCcchHHHHhhHHHHHHHHHHHHHhccHHHHHHHHHHHHHhhhhhhh
Confidence 65 778888887665544 88888899999999999999999998854
No 328
>PF10602 RPN7: 26S proteasome subunit RPN7; InterPro: IPR019585 This entry represents the regulatory subunit RPN7 (known as the non-ATPase regulatory subunit 6 in higher eukaryotes) of the 26S proteasome. This entry also matches the evolutionarily related subunit 1 of the COP9 signalosome complex (CSN) from Arabidopsis []. The 26S proteasome plays a major role in ATP-dependent degradation of ubiquitinated proteins. Substrate specificity is conferred by the regulatory particle (RP), which can dissociate into stable lid and base subcomplexes. The regulatory subunit RPN7 is one of the lid subunits of the 26S proteasome and has been shown in Saccharomyces cerevisiae (Baker's yeast) to be required for structural integrity []. The COP9 signalosome is a conserved protein complex composed of eight subunits, where Individual subunits of the complex have been linked to various signal transduction pathways leading to gene expression and cell cycle control []. The overall organisation and the amino acid sequences of the COP9 signalosome subunits resemble the lid subcomplex of the 19 S regulatory particle for the 26 S proteasome []. COP9 subunit 1 (CSN1 or GPS1) of the COP9 complex is an essential subunit of the complex with regard to both structural integrity and functionality. The N-terminal region of subunit 1 (CSN1-N) can inhibit c-fos expression from either a transfected template or a chromosomal transgene (fos-lacZ), and may contain the activity domain that confers most of the repression functions of CSN1. The C-terminal region of subunit 1 (CSN1-C) allows integration of the protein into the COP9 signalosome.
Probab=93.94 E-value=1.3 Score=40.86 Aligned_cols=98 Identities=13% Similarity=0.147 Sum_probs=50.6
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC---HHHHHHHHHHHHHcCChHHHHHHHHHHHhhCCCCCCh----HHHH
Q 003563 137 LRIHLASFYVEIGDYEKAAESYEQIQKLFPDN---VDATKTGAQLFLKCGQTARSIGILEEYLKVHPSDADL----SVID 209 (810)
Q Consensus 137 ~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~---~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~----~~~~ 209 (810)
++..+|..|.+.|+.+.|++.|.++....... .+.+..+..+.+..+++......+.++-.......++ ....
T Consensus 38 ~~~~l~~~~~~~Gd~~~A~k~y~~~~~~~~~~~~~id~~l~~irv~i~~~d~~~v~~~i~ka~~~~~~~~d~~~~nrlk~ 117 (177)
T PF10602_consen 38 ALEDLADHYCKIGDLEEALKAYSRARDYCTSPGHKIDMCLNVIRVAIFFGDWSHVEKYIEKAESLIEKGGDWERRNRLKV 117 (177)
T ss_pred HHHHHHHHHHHhhhHHHHHHHHHHHhhhcCCHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHhccchHHHHHHHHH
Confidence 45555666666666666666666555443221 2444555555555666666655555554433222222 1122
Q ss_pred HHHHHHHHcCCHHHHHHHHHHHHHH
Q 003563 210 LLVAILMENNAYEKTLQHIEHAQIV 234 (810)
Q Consensus 210 ~la~~~~~~g~~~~A~~~~~~~~~~ 234 (810)
.-|..++..++|.+|-..|-.+...
T Consensus 118 ~~gL~~l~~r~f~~AA~~fl~~~~t 142 (177)
T PF10602_consen 118 YEGLANLAQRDFKEAAELFLDSLST 142 (177)
T ss_pred HHHHHHHHhchHHHHHHHHHccCcC
Confidence 3444555566777776666655433
No 329
>KOG3783 consensus Uncharacterized conserved protein [Function unknown]
Probab=93.94 E-value=10 Score=40.47 Aligned_cols=223 Identities=13% Similarity=-0.003 Sum_probs=121.0
Q ss_pred HHHHHHHHHHcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC----HHHHHHHHHHHHHcCChHHHHHHHHHH
Q 003563 120 AMYYIRQAIRAEPKDISLRIHLASFYVEIGDYEKAAESYEQIQKLFPDN----VDATKTGAQLFLKCGQTARSIGILEEY 195 (810)
Q Consensus 120 A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~----~~~~~~la~~~~~~g~~~~A~~~~~~~ 195 (810)
..+.+.......|+++......+.++...|+.+.|+..++..+. +.- .-.++.+|.++..+.+|..|...+...
T Consensus 252 ~~~~Ll~~~~~~p~ga~wll~~ar~l~~~g~~eaa~~~~~~~v~--~~~kQ~~~l~~fE~aw~~v~~~~~~~aad~~~~L 329 (546)
T KOG3783|consen 252 CEKALKKYRKRYPKGALWLLMEARILSIKGNSEAAIDMESLSIP--IRMKQVKSLMVFERAWLSVGQHQYSRAADSFDLL 329 (546)
T ss_pred HHHHhHHHHHhCCCCccHHHHHHHHHHHcccHHHHHHHHHhccc--HHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHH
Confidence 33444444455666666666677777777776666666666555 211 123455666666666777777666666
Q ss_pred HhhCCCCCChHHHHHHH-HHHHH--------cCCHHHHHHHHHHHHHHh---cCC-----------------CC---CcH
Q 003563 196 LKVHPSDADLSVIDLLV-AILME--------NNAYEKTLQHIEHAQIVR---FSG-----------------KE---LPL 243 (810)
Q Consensus 196 l~~~p~~~~~~~~~~la-~~~~~--------~g~~~~A~~~~~~~~~~~---~~~-----------------~~---~~~ 243 (810)
.+...-+.- .|..++ .+++. .|+-++|..+++...... |.+ .+ ...
T Consensus 330 ~desdWS~a--~Y~Yfa~cc~l~~~~~~q~~~~ne~~a~~~~k~~~~l~~~a~K~~P~E~f~~RKverf~~~~~~~~~~~ 407 (546)
T KOG3783|consen 330 RDESDWSHA--FYTYFAGCCLLQNWEVNQGAGGNEEKAQLYFKVGEELLANAGKNLPLEKFIVRKVERFVKRGPLNASIL 407 (546)
T ss_pred HhhhhhhHH--HHHHHHHHHHhccHHHHHhcccchhHHHHHHHHHHHHHHhccccCchhHHHHHHHHHHhcccccccccc
Confidence 554322211 222222 22211 223444443333322221 100 11 000
Q ss_pred H--HHHHHHHHHHh--cCCHHHHH---HHHHHhhccCCchhHhHHHHHHHHHHHcCCcHHHHHHHHHHHhc------cCC
Q 003563 244 K--LKVKAGICYLR--LGNMEKAE---ILFADLQWKNAIDHADLITEVADTLMSLGHSNSALKYYHFLETN------AGT 310 (810)
Q Consensus 244 ~--~~~~la~~~~~--~g~~~~A~---~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~------~~~ 310 (810)
. -++.++..+-. ....++.. ..++.---.++.+..-.++.+|.++...|+...|..+|....+. ...
T Consensus 408 la~P~~El~Y~Wngf~~~s~~~l~k~~~~~~~~~~~d~Dd~~lk~lL~g~~lR~Lg~~~~a~~~f~i~~~~e~~~~~d~w 487 (546)
T KOG3783|consen 408 LASPYYELAYFWNGFSRMSKNELEKMRAELENPKIDDSDDEGLKYLLKGVILRNLGDSEVAPKCFKIQVEKESKRTEDLW 487 (546)
T ss_pred ccchHHHHHHHHhhcccCChhhHHHHHHHHhccCCCCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhhccccc
Confidence 0 11222222211 11222222 22221111133333445778899999999999999999877633 122
Q ss_pred CCHHHHHHHHHHHHHccC-HHHHHHHHHHHHhhcCCC
Q 003563 311 DNGYLYLKLAECYLSLKE-RAHAIMFFYKALDRFEDN 346 (810)
Q Consensus 311 ~~~~~~~~la~~~~~~g~-~~~A~~~~~~al~~~p~~ 346 (810)
-.|.+++.+|..+..+|. ..++..++.+|-+...+.
T Consensus 488 ~~PfA~YElA~l~~~~~g~~~e~~~~L~kAr~~~~dY 524 (546)
T KOG3783|consen 488 AVPFALYELALLYWDLGGGLKEARALLLKAREYASDY 524 (546)
T ss_pred cccHHHHHHHHHHHhcccChHHHHHHHHHHHhhcccc
Confidence 367899999999999999 999999999998876544
No 330
>COG4976 Predicted methyltransferase (contains TPR repeat) [General function prediction only]
Probab=93.87 E-value=0.095 Score=48.45 Aligned_cols=58 Identities=22% Similarity=0.377 Sum_probs=36.7
Q ss_pred HHcCChHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCH
Q 003563 78 SALGNHKSAFDFYVIAAHLSPKDSALWKQLLTFAVQKGDTAQAMYYIRQAIRAEPKDI 135 (810)
Q Consensus 78 ~~~g~~~~A~~~~~~a~~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~ 135 (810)
...++.+.|.+.|.+++.+.|.....|+.+|....+.|+++.|...|++.++++|.+.
T Consensus 6 ~~~~D~~aaaely~qal~lap~w~~gwfR~g~~~ekag~~daAa~a~~~~L~ldp~D~ 63 (287)
T COG4976 6 AESGDAEAAAELYNQALELAPEWAAGWFRLGEYTEKAGEFDAAAAAYEEVLELDPEDH 63 (287)
T ss_pred cccCChHHHHHHHHHHhhcCchhhhhhhhcchhhhhcccHHHHHHHHHHHHcCCcccc
Confidence 3456666666666666666666666666666666666666666666666666666543
No 331
>PRK15180 Vi polysaccharide biosynthesis protein TviD; Provisional
Probab=93.75 E-value=0.39 Score=49.42 Aligned_cols=121 Identities=13% Similarity=-0.019 Sum_probs=57.9
Q ss_pred cCChHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHcCCHHHHHHHHH
Q 003563 80 LGNHKSAFDFYVIAAHLSPKDSALWKQLLTFAVQKGDTAQAMYYIRQAIRAEPKDISLRIHLASFYVEIGDYEKAAESYE 159 (810)
Q Consensus 80 ~g~~~~A~~~~~~a~~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~ 159 (810)
.|+...|-+-...++...|.+|......+.+....|+|+.|...+..+-..-.....+...+-.....+|++++|...-.
T Consensus 302 ~gd~~aas~~~~~~lr~~~~~p~~i~l~~~i~~~lg~ye~~~~~~s~~~~~~~s~~~~~~~~~r~~~~l~r~~~a~s~a~ 381 (831)
T PRK15180 302 DGDIIAASQQLFAALRNQQQDPVLIQLRSVIFSHLGYYEQAYQDISDVEKIIGTTDSTLRCRLRSLHGLARWREALSTAE 381 (831)
T ss_pred ccCHHHHHHHHHHHHHhCCCCchhhHHHHHHHHHhhhHHHHHHHhhchhhhhcCCchHHHHHHHhhhchhhHHHHHHHHH
Confidence 44555555555555555555555555555555555555555554444333222222333333444445555555555555
Q ss_pred HHHHhCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHhhCC
Q 003563 160 QIQKLFPDNVDATKTGAQLFLKCGQTARSIGILEEYLKVHP 200 (810)
Q Consensus 160 ~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p 200 (810)
-++...-+++++...-+...-.+|-++++...+++.+.++|
T Consensus 382 ~~l~~eie~~ei~~iaa~sa~~l~~~d~~~~~wk~~~~~~~ 422 (831)
T PRK15180 382 MMLSNEIEDEEVLTVAAGSADALQLFDKSYHYWKRVLLLNP 422 (831)
T ss_pred HHhccccCChhheeeecccHHHHhHHHHHHHHHHHHhccCC
Confidence 54444444444444444444444555555555555555544
No 332
>PF11207 DUF2989: Protein of unknown function (DUF2989); InterPro: IPR021372 Some members in this bacterial family of proteins are annotated as lipoproteins however this cannot be confirmed.
Probab=93.59 E-value=0.89 Score=41.91 Aligned_cols=77 Identities=23% Similarity=0.235 Sum_probs=61.5
Q ss_pred HcCCcHHHHHHHHHHHhccCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHhhcCC----CHHHHHHHHHHHHHcCCHHH
Q 003563 290 SLGHSNSALKYYHFLETNAGTDNGYLYLKLAECYLSLKERAHAIMFFYKALDRFED----NIDARLTLASLLLEEAKEEE 365 (810)
Q Consensus 290 ~~~~~~~A~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~----~~~~~~~la~~~~~~g~~~~ 365 (810)
....-++|...|-++.....-+++...+.+|..|. ..+.++|+..+-+++++.+. |+++...|+.++.++|+++.
T Consensus 118 sr~~d~~A~~~fL~~E~~~~l~t~elq~aLAtyY~-krD~~Kt~~ll~~~L~l~~~~~~~n~eil~sLas~~~~~~~~e~ 196 (203)
T PF11207_consen 118 SRFGDQEALRRFLQLEGTPELETAELQYALATYYT-KRDPEKTIQLLLRALELSNPDDNFNPEILKSLASIYQKLKNYEQ 196 (203)
T ss_pred hccCcHHHHHHHHHHcCCCCCCCHHHHHHHHHHHH-ccCHHHHHHHHHHHHHhcCCCCCCCHHHHHHHHHHHHHhcchhh
Confidence 34455778888877776655678888999988876 56789999999999988543 48899999999999999988
Q ss_pred HH
Q 003563 366 AI 367 (810)
Q Consensus 366 A~ 367 (810)
|-
T Consensus 197 AY 198 (203)
T PF11207_consen 197 AY 198 (203)
T ss_pred hh
Confidence 74
No 333
>COG4976 Predicted methyltransferase (contains TPR repeat) [General function prediction only]
Probab=93.54 E-value=0.12 Score=47.77 Aligned_cols=60 Identities=23% Similarity=0.412 Sum_probs=49.9
Q ss_pred HHHHcCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCH
Q 003563 110 FAVQKGDTAQAMYYIRQAIRAEPKDISLRIHLASFYVEIGDYEKAAESYEQIQKLFPDNV 169 (810)
Q Consensus 110 ~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~ 169 (810)
.....++.+.|.+.|.+++.+.|.....|+.+|....+.|+++.|...|++.++++|.+.
T Consensus 4 ~~~~~~D~~aaaely~qal~lap~w~~gwfR~g~~~ekag~~daAa~a~~~~L~ldp~D~ 63 (287)
T COG4976 4 MLAESGDAEAAAELYNQALELAPEWAAGWFRLGEYTEKAGEFDAAAAAYEEVLELDPEDH 63 (287)
T ss_pred hhcccCChHHHHHHHHHHhhcCchhhhhhhhcchhhhhcccHHHHHHHHHHHHcCCcccc
Confidence 445678888888888888888888888888888888888888888888888888888764
No 334
>PF04053 Coatomer_WDAD: Coatomer WD associated region ; InterPro: IPR006692 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the WD-associated region found in coatomer subunits alpha, beta and beta' subunits. The alpha-subunit (RET1P) of the coatomer complex in Saccharomyces cerevisiae (Baker's yeast), participates in membrane transport between the endoplasmic reticulum and Golgi apparatus. The protein contains six WD-40 repeat motifs in its N-terminal region []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006886 intracellular protein transport, 0016192 vesicle-mediated transport, 0030117 membrane coat; PDB: 3MKQ_B.
Probab=93.52 E-value=5.2 Score=42.99 Aligned_cols=158 Identities=16% Similarity=0.191 Sum_probs=81.7
Q ss_pred HHHHcCCHHHHHHHHHHHHHhCCCC-hHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCHHHH
Q 003563 42 LQYAYGNFEQAISLLKEVVRLSPNL-PETYNTLGLAHSALGNHKSAFDFYVIAAHLSPKDSALWKQLLTFAVQKGDTAQA 120 (810)
Q Consensus 42 ~~~~~g~~~~A~~~~~~~l~~~p~~-~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~p~~~~~~~~la~~~~~~g~~~~A 120 (810)
....+|+++++..+.... +.-|.- ..-...++..+...|-++.|+.+. .+++..+. +..+.|+++.|
T Consensus 270 ~av~~~d~~~v~~~i~~~-~ll~~i~~~~~~~i~~fL~~~G~~e~AL~~~--------~D~~~rFe---LAl~lg~L~~A 337 (443)
T PF04053_consen 270 TAVLRGDFEEVLRMIAAS-NLLPNIPKDQGQSIARFLEKKGYPELALQFV--------TDPDHRFE---LALQLGNLDIA 337 (443)
T ss_dssp HHHHTT-HHH-----HHH-HTGGG--HHHHHHHHHHHHHTT-HHHHHHHS--------S-HHHHHH---HHHHCT-HHHH
T ss_pred HHHHcCChhhhhhhhhhh-hhcccCChhHHHHHHHHHHHCCCHHHHHhhc--------CChHHHhH---HHHhcCCHHHH
Confidence 346678888877766421 112222 334555666667777777776553 23444433 34567777777
Q ss_pred HHHHHHHHHcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHhhCC
Q 003563 121 MYYIRQAIRAEPKDISLRIHLASFYVEIGDYEKAAESYEQIQKLFPDNVDATKTGAQLFLKCGQTARSIGILEEYLKVHP 200 (810)
Q Consensus 121 ~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p 200 (810)
.+..++ .+++.-|..+|.....+|+++-|.++|+++-. +..+..+|...|+.+.-.+..+.+.....
T Consensus 338 ~~~a~~-----~~~~~~W~~Lg~~AL~~g~~~lAe~c~~k~~d--------~~~L~lLy~~~g~~~~L~kl~~~a~~~~~ 404 (443)
T PF04053_consen 338 LEIAKE-----LDDPEKWKQLGDEALRQGNIELAEECYQKAKD--------FSGLLLLYSSTGDREKLSKLAKIAEERGD 404 (443)
T ss_dssp HHHCCC-----CSTHHHHHHHHHHHHHTTBHHHHHHHHHHCT---------HHHHHHHHHHCT-HHHHHHHHHHHHHTT-
T ss_pred HHHHHh-----cCcHHHHHHHHHHHHHcCCHHHHHHHHHhhcC--------ccccHHHHHHhCCHHHHHHHHHHHHHccC
Confidence 655432 34566777888888888888888877777532 23455566667776554444444433221
Q ss_pred CCCChHHHHHHHHHHHHcCCHHHHHHHHHHH
Q 003563 201 SDADLSVIDLLVAILMENNAYEKTLQHIEHA 231 (810)
Q Consensus 201 ~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~ 231 (810)
++..-.+++..|+.++.++.+.+.
T Consensus 405 -------~n~af~~~~~lgd~~~cv~lL~~~ 428 (443)
T PF04053_consen 405 -------INIAFQAALLLGDVEECVDLLIET 428 (443)
T ss_dssp -------HHHHHHHHHHHT-HHHHHHHHHHT
T ss_pred -------HHHHHHHHHHcCCHHHHHHHHHHc
Confidence 222233344456666666655543
No 335
>PF09986 DUF2225: Uncharacterized protein conserved in bacteria (DUF2225); InterPro: IPR018708 This conserved bacterial family has no known function.
Probab=93.51 E-value=1.1 Score=42.67 Aligned_cols=28 Identities=11% Similarity=-0.008 Sum_probs=15.8
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHH
Q 003563 206 SVIDLLVAILMENNAYEKTLQHIEHAQI 233 (810)
Q Consensus 206 ~~~~~la~~~~~~g~~~~A~~~~~~~~~ 233 (810)
.++..+|.+|...|+.+....++++|+.
T Consensus 119 ~l~LrlAWlyR~~~~~~~E~~fl~~Al~ 146 (214)
T PF09986_consen 119 GLCLRLAWLYRDLGDEENEKRFLRKALE 146 (214)
T ss_pred HHHHHHHHHhhccCCHHHHHHHHHHHHH
Confidence 3455666666666665555555544443
No 336
>PF13374 TPR_10: Tetratricopeptide repeat; PDB: 3CEQ_B 3EDT_H 3NF1_A.
Probab=93.49 E-value=0.087 Score=34.85 Aligned_cols=31 Identities=35% Similarity=0.388 Sum_probs=26.9
Q ss_pred hhhhhHHHHHHHhChhhHHHHHHHHHhcccc
Q 003563 723 EALYNIARACHHVGLVSLAASYYEKVLAIKE 753 (810)
Q Consensus 723 e~~ynlgr~~~~lg~~~~Ai~~Y~~vL~~~~ 753 (810)
.+..|+|.+|...|.+.+|..++++++++..
T Consensus 3 ~~~~~la~~~~~~g~~~~A~~~~~~al~~~~ 33 (42)
T PF13374_consen 3 SALNNLANAYRAQGRYEEALELLEEALEIRE 33 (42)
T ss_dssp HHHHHHHHHHHHCT-HHHHHHHHHHHHHHH-
T ss_pred HHHHHHHHHHHhhhhcchhhHHHHHHHHHHH
Confidence 4678999999999999999999999998854
No 337
>KOG2422 consensus Uncharacterized conserved protein [Function unknown]
Probab=93.48 E-value=8.6 Score=41.31 Aligned_cols=49 Identities=18% Similarity=0.115 Sum_probs=32.5
Q ss_pred cCCHHHHHHHHHHHHHh------------CCCChHHHHHHHHHHHHcCChHHHHHHHHHHH
Q 003563 46 YGNFEQAISLLKEVVRL------------SPNLPETYNTLGLAHSALGNHKSAFDFYVIAA 94 (810)
Q Consensus 46 ~g~~~~A~~~~~~~l~~------------~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~ 94 (810)
..-|++|...|.-+... .|-+.+.+..++.+...+|+.+-|.....+++
T Consensus 251 s~sYeqaq~~F~~av~~~d~n~v~~lL~ssPYHvdsLLqva~~~r~qgD~e~aadLieR~L 311 (665)
T KOG2422|consen 251 SNSYEQAQRDFYLAVIVHDPNNVLILLISSPYHVDSLLQVADIFRFQGDREMAADLIERGL 311 (665)
T ss_pred chHHHHHHHHHHHHHhhcCCcceeeeeccCCcchhHHHHHHHHHHHhcchhhHHHHHHHHH
Confidence 45577777777766553 35556677777777777777776666665554
No 338
>PF15015 NYD-SP12_N: Spermatogenesis-associated, N-terminal
Probab=93.30 E-value=0.78 Score=46.64 Aligned_cols=116 Identities=21% Similarity=0.200 Sum_probs=63.5
Q ss_pred CHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCCCHHHHHHHHH
Q 003563 30 SPGVTKMLGEASLQYAYGNFEQAISLLKEVVRLSPNLPETYNTLGLAHSALGNHKSAFDFYVIAAHLSPKDSALWKQLLT 109 (810)
Q Consensus 30 ~~~~~~~l~~a~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~p~~~~~~~~la~ 109 (810)
+.-....+..|..++++++|..|..-|..+++...+ |.+.... ....+.+.+.-+ ...--.+..
T Consensus 173 Dkwl~vAL~das~~yrqk~ya~Aa~rF~taLelcsk--------g~a~~k~-~~~~~~di~~va-------SfIetklv~ 236 (569)
T PF15015_consen 173 DKWLQVALKDASSCYRQKKYAVAAGRFRTALELCSK--------GAALSKP-FKASAEDISSVA-------SFIETKLVT 236 (569)
T ss_pred HHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHhh--------hhhccCC-CCCChhhHHHHH-------HHHHHHHHH
Confidence 334455567788888899888888888888775321 1110000 000111111110 112234556
Q ss_pred HHHHcCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHH
Q 003563 110 FAVQKGDTAQAMYYIRQAIRAEPKDISLRIHLASFYVEIGDYEKAAESYEQI 161 (810)
Q Consensus 110 ~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~ 161 (810)
||+.+++.+-|+....+.+..+|.....+...|.++..+.+|.+|...+--+
T Consensus 237 CYL~~rkpdlALnh~hrsI~lnP~~frnHLrqAavfR~LeRy~eAarSamia 288 (569)
T PF15015_consen 237 CYLRMRKPDLALNHSHRSINLNPSYFRNHLRQAAVFRRLERYSEAARSAMIA 288 (569)
T ss_pred hhhhcCCCchHHHHHhhhhhcCcchhhHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 6666666666666666666666666666666666666666666665554443
No 339
>TIGR02561 HrpB1_HrpK type III secretion protein HrpB1/HrpK. This gene is found within type III secretion operons in a limited range of species including Xanthomonas, Ralstonia and Burkholderia.
Probab=93.16 E-value=1.3 Score=38.49 Aligned_cols=66 Identities=14% Similarity=0.077 Sum_probs=27.5
Q ss_pred cCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHH
Q 003563 114 KGDTAQAMYYIRQAIRAEPKDISLRIHLASFYVEIGDYEKAAESYEQIQKLFPDNVDATKTGAQLF 179 (810)
Q Consensus 114 ~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~la~~~ 179 (810)
.++.+++...+...--+.|+.+.....-|.++...|++.+|+..++.+....+..+-..-.++.++
T Consensus 23 ~~d~~D~e~lLdALrvLrP~~~e~d~~dg~l~i~rg~w~eA~rvlr~l~~~~~~~p~~kAL~A~CL 88 (153)
T TIGR02561 23 SADPYDAQAMLDALRVLRPNLKELDMFDGWLLIARGNYDEAARILRELLSSAGAPPYGKALLALCL 88 (153)
T ss_pred cCCHHHHHHHHHHHHHhCCCccccchhHHHHHHHcCCHHHHHHHHHhhhccCCCchHHHHHHHHHH
Confidence 344444444444444444444444444444444444444444444444443333333333333333
No 340
>PF09986 DUF2225: Uncharacterized protein conserved in bacteria (DUF2225); InterPro: IPR018708 This conserved bacterial family has no known function.
Probab=93.11 E-value=1.9 Score=41.17 Aligned_cols=30 Identities=17% Similarity=0.191 Sum_probs=17.0
Q ss_pred HHHHHHHHHHHHHccCHHHHHHHHHHHHhh
Q 003563 313 GYLYLKLAECYLSLKERAHAIMFFYKALDR 342 (810)
Q Consensus 313 ~~~~~~la~~~~~~g~~~~A~~~~~~al~~ 342 (810)
..+.+.+|.+..+.|++++|..+|.+++..
T Consensus 165 ~~l~YLigeL~rrlg~~~eA~~~fs~vi~~ 194 (214)
T PF09986_consen 165 ATLLYLIGELNRRLGNYDEAKRWFSRVIGS 194 (214)
T ss_pred HHHHHHHHHHHHHhCCHHHHHHHHHHHHcC
Confidence 345555556666666666666666555544
No 341
>PF12968 DUF3856: Domain of Unknown Function (DUF3856); InterPro: IPR024552 This domain of unknown function is found in a small group of tetratricopeptide-like proteins, which includes the uncharacterised protein Q8KAL8 from SWISSPROT. The structure of Q8KAL8 is known and belongs to the SCOP all alpha class, TPR-like superfamily, CT2138-like family.; PDB: 2HR2_D.
Probab=92.94 E-value=3.3 Score=34.27 Aligned_cols=86 Identities=14% Similarity=0.026 Sum_probs=50.0
Q ss_pred HHHcCChHHHHHHHHHHHhcCCCC------------HHHHHHHHHHHHHcCCHHHHHHHHHHHHH-------cCCCCHH-
Q 003563 77 HSALGNHKSAFDFYVIAAHLSPKD------------SALWKQLLTFAVQKGDTAQAMYYIRQAIR-------AEPKDIS- 136 (810)
Q Consensus 77 ~~~~g~~~~A~~~~~~a~~~~p~~------------~~~~~~la~~~~~~g~~~~A~~~~~~al~-------~~p~~~~- 136 (810)
.+.-|-|++|...+.++.+....- .-.+..|+..+..+|+|++++....+++. ++.+...
T Consensus 19 ql~~g~~~eAa~s~r~AM~~srtiP~eEaFDh~GFDA~chA~Ls~A~~~Lgry~e~L~sA~~aL~YFNRRGEL~qdeGkl 98 (144)
T PF12968_consen 19 QLQDGAYEEAAASCRKAMEVSRTIPAEEAFDHDGFDAFCHAGLSGALAGLGRYDECLQSADRALRYFNRRGELHQDEGKL 98 (144)
T ss_dssp HHHHT-HHHHHHHHHHHHHHHTTS-TTS---HHHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHHH--TTSTHHHH
T ss_pred HHHhhhHHHHHHHHHHHHHHhccCChHhhcccccHHHHHHHHHHHHHHhhccHHHHHHHHHHHHHHHhhccccccccchh
Confidence 445678888888888888764221 23456777778888888877766666654 2222221
Q ss_pred ---HHHHHHHHHHHcCCHHHHHHHHHHHH
Q 003563 137 ---LRIHLASFYVEIGDYEKAAESYEQIQ 162 (810)
Q Consensus 137 ---~~~~la~~~~~~g~~~~A~~~~~~~l 162 (810)
+.+..+..+...|+.++|+..|+.+-
T Consensus 99 WIaaVfsra~Al~~~Gr~~eA~~~fr~ag 127 (144)
T PF12968_consen 99 WIAAVFSRAVALEGLGRKEEALKEFRMAG 127 (144)
T ss_dssp HHHHHHHHHHHHHHTT-HHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhcCChHHHHHHHHHHH
Confidence 23345555555666666666655543
No 342
>KOG1463 consensus 26S proteasome regulatory complex, subunit RPN6/PSMD11 [Posttranslational modification, protein turnover, chaperones]
Probab=92.93 E-value=11 Score=37.68 Aligned_cols=171 Identities=16% Similarity=0.095 Sum_probs=114.6
Q ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHHhcC--CCCCcHHHHHHHHHHHHhcCCHHHHHHHHHHhhcc-----CCc-hhHhH
Q 003563 209 DLLVAILMENNAYEKTLQHIEHAQIVRFS--GKELPLKLKVKAGICYLRLGNMEKAEILFADLQWK-----NAI-DHADL 280 (810)
Q Consensus 209 ~~la~~~~~~g~~~~A~~~~~~~~~~~~~--~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~-----~~~-~~~~~ 280 (810)
..++.+|...++|.+|+......+..... +...-.++...-..+|....+..+|...+..+... .|+ .....
T Consensus 132 arli~Ly~d~~~YteAlaL~~~L~rElKKlDDK~lLvev~llESK~y~~l~Nl~KakasLTsART~AnaiYcpPqlQa~l 211 (411)
T KOG1463|consen 132 ARLIRLYNDTKRYTEALALINDLLRELKKLDDKILLVEVHLLESKAYHALRNLPKAKASLTSARTTANAIYCPPQLQATL 211 (411)
T ss_pred HHHHHHHHhhHHHHHHHHHHHHHHHHHHhcccccceeeehhhhhHHHHHHhcchhHHHHHHHHHHhhcccccCHHHHHHH
Confidence 36889999999999999998887765432 23344566777788899999999999888876432 122 11222
Q ss_pred HHHHHHHHHHcCCcHHHHHHHHHHHhccC--CCCHHH---HHHHHHHHHHccCHHH--HHHHHHHHHhhcCCCHHHHHHH
Q 003563 281 ITEVADTLMSLGHSNSALKYYHFLETNAG--TDNGYL---YLKLAECYLSLKERAH--AIMFFYKALDRFEDNIDARLTL 353 (810)
Q Consensus 281 ~~~la~~~~~~~~~~~A~~~~~~~~~~~~--~~~~~~---~~~la~~~~~~g~~~~--A~~~~~~al~~~p~~~~~~~~l 353 (810)
-..-|..+....+|..|..+|=++.+... .++..+ +-.+-.|-...+..++ ++-.-+.+++....+.++....
T Consensus 212 DLqSGIlha~ekDykTafSYFyEAfEgf~s~~~~v~A~~sLKYMlLcKIMln~~ddv~~lls~K~~l~y~g~~i~Amkav 291 (411)
T KOG1463|consen 212 DLQSGILHAAEKDYKTAFSYFYEAFEGFDSLDDDVKALTSLKYMLLCKIMLNLPDDVAALLSAKLALKYAGRDIDAMKAV 291 (411)
T ss_pred HHhccceeecccccchHHHHHHHHHccccccCCcHHHHHHHHHHHHHHHHhcCHHHHHHHHhhHHHHhccCcchHHHHHH
Confidence 23336666667899999999988775422 122233 2223334445555555 4444456677777788899888
Q ss_pred HHHHHH--cCCHHHHHHhcCCCCCCCcc
Q 003563 354 ASLLLE--EAKEEEAITLLSPPKDLDSL 379 (810)
Q Consensus 354 a~~~~~--~g~~~~A~~~~~~a~~~~~~ 379 (810)
+..+.. +.+|+.|+.-|..-+..+|-
T Consensus 292 AeA~~nRSLkdF~~AL~~yk~eL~~D~i 319 (411)
T KOG1463|consen 292 AEAFGNRSLKDFEKALADYKKELAEDPI 319 (411)
T ss_pred HHHhcCCcHHHHHHHHHHhHHHHhcChH
Confidence 888865 45799999999877777764
No 343
>PF10579 Rapsyn_N: Rapsyn N-terminal myristoylation and linker region; InterPro: IPR019568 Neuromuscular junction formation relies upon the clustering of acetylcholine receptors and other proteins in the muscle membrane. Rapsyn is a peripheral membrane protein that is selectively concentrated at the neuromuscular junction and is essential for the formation of synaptic acetylcholine receptor aggregates. Acetylcholine receptors fail to aggregate beneath nerve terminals in mice where rapsyn has been knocked out. The N-terminal six amino acids of rapsyn are its myristoylation site, and myristoylation is necessary for the targeting of the protein to the membrane []. ; GO: 0008270 zinc ion binding, 0033130 acetylcholine receptor binding, 0007268 synaptic transmission, 0005856 cytoskeleton, 0030054 cell junction, 0045211 postsynaptic membrane
Probab=92.65 E-value=1 Score=34.17 Aligned_cols=64 Identities=14% Similarity=0.246 Sum_probs=47.3
Q ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHHHHH---HHHHHcCChHHHHHHHHHHHh
Q 003563 32 GVTKMLGEASLQYAYGNFEQAISLLKEVVRLSPNLPETYNTLG---LAHSALGNHKSAFDFYVIAAH 95 (810)
Q Consensus 32 ~~~~~l~~a~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~l~---~~~~~~g~~~~A~~~~~~a~~ 95 (810)
.+...+.+|..++...+.++|+..++++++..++.++-+..+| .+|...|++.+++.+...-+.
T Consensus 5 ~ak~~ie~GlkLY~~~~~~~Al~~W~~aL~k~~~~~~rf~~lG~l~qA~~e~Gkyr~~L~fA~~Q~~ 71 (80)
T PF10579_consen 5 QAKQQIEKGLKLYHQNETQQALQKWRKALEKITDREDRFRVLGYLIQAHMEWGKYREMLAFALQQLE 71 (80)
T ss_pred HHHHHHHHHHHHhccchHHHHHHHHHHHHhhcCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3456678888888889999999999999988887776655554 456678888887776654443
No 344
>PF04053 Coatomer_WDAD: Coatomer WD associated region ; InterPro: IPR006692 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the WD-associated region found in coatomer subunits alpha, beta and beta' subunits. The alpha-subunit (RET1P) of the coatomer complex in Saccharomyces cerevisiae (Baker's yeast), participates in membrane transport between the endoplasmic reticulum and Golgi apparatus. The protein contains six WD-40 repeat motifs in its N-terminal region []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006886 intracellular protein transport, 0016192 vesicle-mediated transport, 0030117 membrane coat; PDB: 3MKQ_B.
Probab=92.39 E-value=2.5 Score=45.32 Aligned_cols=128 Identities=19% Similarity=0.152 Sum_probs=71.5
Q ss_pred HHHHHcCCHHHHHHHHHHHHHHhcCCCCCcHHHHHHHHHHHHhcCCHHHHHHHHHHhhccCCchhHhHHHHHHHHHHHcC
Q 003563 213 AILMENNAYEKTLQHIEHAQIVRFSGKELPLKLKVKAGICYLRLGNMEKAEILFADLQWKNAIDHADLITEVADTLMSLG 292 (810)
Q Consensus 213 ~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~la~~~~~~~ 292 (810)
......++++++........-. +..+......++..+.+.|-++.|+...+ +++..+.| ..+.|
T Consensus 269 k~av~~~d~~~v~~~i~~~~ll----~~i~~~~~~~i~~fL~~~G~~e~AL~~~~---------D~~~rFeL---Al~lg 332 (443)
T PF04053_consen 269 KTAVLRGDFEEVLRMIAASNLL----PNIPKDQGQSIARFLEKKGYPELALQFVT---------DPDHRFEL---ALQLG 332 (443)
T ss_dssp HHHHHTT-HHH-----HHHHTG----GG--HHHHHHHHHHHHHTT-HHHHHHHSS----------HHHHHHH---HHHCT
T ss_pred HHHHHcCChhhhhhhhhhhhhc----ccCChhHHHHHHHHHHHCCCHHHHHhhcC---------ChHHHhHH---HHhcC
Confidence 3444567777776666422111 23345556677777788888887776522 33333333 36778
Q ss_pred CcHHHHHHHHHHHhccCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHhhcCCCHHHHHHHHHHHHHcCCHHHHHHhc
Q 003563 293 HSNSALKYYHFLETNAGTDNGYLYLKLAECYLSLKERAHAIMFFYKALDRFEDNIDARLTLASLLLEEAKEEEAITLL 370 (810)
Q Consensus 293 ~~~~A~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~ 370 (810)
+.+.|.+.. ...+++..|..+|......|+++-|.++|+++-. +..|..+|.-.|+.+.-.++.
T Consensus 333 ~L~~A~~~a------~~~~~~~~W~~Lg~~AL~~g~~~lAe~c~~k~~d--------~~~L~lLy~~~g~~~~L~kl~ 396 (443)
T PF04053_consen 333 NLDIALEIA------KELDDPEKWKQLGDEALRQGNIELAEECYQKAKD--------FSGLLLLYSSTGDREKLSKLA 396 (443)
T ss_dssp -HHHHHHHC------CCCSTHHHHHHHHHHHHHTTBHHHHHHHHHHCT---------HHHHHHHHHHCT-HHHHHHHH
T ss_pred CHHHHHHHH------HhcCcHHHHHHHHHHHHHcCCHHHHHHHHHhhcC--------ccccHHHHHHhCCHHHHHHHH
Confidence 888887665 2345777888888888888888888888887532 234444555555554444443
No 345
>KOG4814 consensus Uncharacterized conserved protein [Function unknown]
Probab=92.35 E-value=1.1 Score=48.14 Aligned_cols=96 Identities=9% Similarity=0.061 Sum_probs=79.4
Q ss_pred HHHHHHHHHcCChHHHHHHHHHHHhcCCCCH------HHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHHHHHHHHHH
Q 003563 71 NTLGLAHSALGNHKSAFDFYVIAAHLSPKDS------ALWKQLLTFAVQKGDTAQAMYYIRQAIRAEPKDISLRIHLASF 144 (810)
Q Consensus 71 ~~l~~~~~~~g~~~~A~~~~~~a~~~~p~~~------~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~ 144 (810)
-.-|.-.++..+|..++++|...+..-|.+. .....++.||....+.+.|.++++.|-+.+|.++-.....-.+
T Consensus 358 Wn~A~~~F~~~~Y~~s~~~y~~Sl~~i~~D~~~~~FaK~qR~l~~CYL~L~QLD~A~E~~~EAE~~d~~~~l~q~~~~~~ 437 (872)
T KOG4814|consen 358 WNTAKKLFKMEKYVVSIRFYKLSLKDIISDNYSDRFAKIQRALQVCYLKLEQLDNAVEVYQEAEEVDRQSPLCQLLMLQS 437 (872)
T ss_pred HHhhHHHHHHHHHHHHHHHHHHHHHhccchhhhhHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHhhccccHHHHHHHHHH
Confidence 3345566778899999999999888766553 4566889999999999999999999999999998888888888
Q ss_pred HHHcCCHHHHHHHHHHHHHhCC
Q 003563 145 YVEIGDYEKAAESYEQIQKLFP 166 (810)
Q Consensus 145 ~~~~g~~~~A~~~~~~~l~~~p 166 (810)
....|.-++|+.+.........
T Consensus 438 ~~~E~~Se~AL~~~~~~~s~~~ 459 (872)
T KOG4814|consen 438 FLAEDKSEEALTCLQKIKSSED 459 (872)
T ss_pred HHHhcchHHHHHHHHHHHhhhc
Confidence 8889999999999888876543
No 346
>KOG3364 consensus Membrane protein involved in organellar division [Cell wall/membrane/envelope biogenesis]
Probab=92.28 E-value=3.3 Score=35.26 Aligned_cols=78 Identities=12% Similarity=0.132 Sum_probs=61.0
Q ss_pred CCcHHHHHHHHHHHHhcCC---HHHHHHHHHHhhc-cCCchhHhHHHHHHHHHHHcCCcHHHHHHHHHHHhccCCCCHHH
Q 003563 240 ELPLKLKVKAGICYLRLGN---MEKAEILFADLQW-KNAIDHADLITEVADTLMSLGHSNSALKYYHFLETNAGTDNGYL 315 (810)
Q Consensus 240 ~~~~~~~~~la~~~~~~g~---~~~A~~~~~~~~~-~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~ 315 (810)
.......++++.++....+ ..+.+.+++.+++ ..|...-+..+.++..+.+.++|++++.+.+.+++. .|++..+
T Consensus 29 ~~s~~s~f~lAwaLV~S~~~~dv~~GI~iLe~l~~~~~~~~rRe~lyYLAvg~yRlkeY~~s~~yvd~ll~~-e~~n~Qa 107 (149)
T KOG3364|consen 29 DVSKQSQFNLAWALVRSRDTEDVQEGIVILEDLLKSAHPERRRECLYYLAVGHYRLKEYSKSLRYVDALLET-EPNNRQA 107 (149)
T ss_pred cchHHHHHHHHHHHHcccchHHHHHhHHHHHHHhhhcCcccchhhhhhhHHHHHHHhhHHHHHHHHHHHHhh-CCCcHHH
Confidence 4455667888888876654 5678888888885 666667788899999999999999999999999876 7777766
Q ss_pred HHH
Q 003563 316 YLK 318 (810)
Q Consensus 316 ~~~ 318 (810)
...
T Consensus 108 ~~L 110 (149)
T KOG3364|consen 108 LEL 110 (149)
T ss_pred HHH
Confidence 543
No 347
>COG1747 Uncharacterized N-terminal domain of the transcription elongation factor GreA [Function unknown]
Probab=92.19 E-value=18 Score=38.38 Aligned_cols=226 Identities=15% Similarity=0.051 Sum_probs=113.3
Q ss_pred CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHH
Q 003563 97 SPKDSALWKQLLTFAVQKGDTAQAMYYIRQAIRAEPKDISLRIHLASFYVEIGDYEKAAESYEQIQKLFPDNVDATKTGA 176 (810)
Q Consensus 97 ~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~la 176 (810)
.|-+...+..+-.++...-.+.-......+++... .+..+++.++.+|... ..++-...+++..+.+-++...-..++
T Consensus 62 ~~l~d~~l~~~~~~f~~n~k~~~veh~c~~~l~~~-e~kmal~el~q~y~en-~n~~l~~lWer~ve~dfnDvv~~ReLa 139 (711)
T COG1747 62 QLLDDSCLVTLLTIFGDNHKNQIVEHLCTRVLEYG-ESKMALLELLQCYKEN-GNEQLYSLWERLVEYDFNDVVIGRELA 139 (711)
T ss_pred ccccchHHHHHHHHhccchHHHHHHHHHHHHHHhc-chHHHHHHHHHHHHhc-CchhhHHHHHHHHHhcchhHHHHHHHH
Confidence 34455555556666666666666666677776654 3455677777777776 456666777777777766666666677
Q ss_pred HHHHHcCChHHHHHHHHHHHhhC-CCCCCh---HHHHHHHHHHHHcCCHHHHHHHHHHHHHHhcCCCCCcHHHHHH-HHH
Q 003563 177 QLFLKCGQTARSIGILEEYLKVH-PSDADL---SVIDLLVAILMENNAYEKTLQHIEHAQIVRFSGKELPLKLKVK-AGI 251 (810)
Q Consensus 177 ~~~~~~g~~~~A~~~~~~~l~~~-p~~~~~---~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~-la~ 251 (810)
..|.. ++.+++..+|.+++... |....+ .+|..+-. .-..+.+.-+....+.....+ .....+.+. .-.
T Consensus 140 ~~yEk-ik~sk~a~~f~Ka~yrfI~~~q~~~i~evWeKL~~--~i~dD~D~fl~l~~kiqt~lg---~~~~~Vl~qdv~~ 213 (711)
T COG1747 140 DKYEK-IKKSKAAEFFGKALYRFIPRRQNAAIKEVWEKLPE--LIGDDKDFFLRLQKKIQTKLG---EGRGSVLMQDVYK 213 (711)
T ss_pred HHHHH-hchhhHHHHHHHHHHHhcchhhhhhHHHHHHHHHH--hccccHHHHHHHHHHHHHhhc---cchHHHHHHHHHH
Confidence 66655 67777777777776542 211111 11111111 112333433333333332211 122222222 223
Q ss_pred HHHhcCCHHHHHHHHHHhhccCCchhHhHHHHHHHHHHHcCCcHHHHHHHHHHHhccCCCCHHHHHHHHHHHHHccCHHH
Q 003563 252 CYLRLGNMEKAEILFADLQWKNAIDHADLITEVADTLMSLGHSNSALKYYHFLETNAGTDNGYLYLKLAECYLSLKERAH 331 (810)
Q Consensus 252 ~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~ 331 (810)
-|....++.+|++.+..+++.+.. +..+.-.+...+...-+ ...+.+-|.....+-..-.++-.
T Consensus 214 ~Ys~~eN~~eai~Ilk~il~~d~k-~~~ar~~~i~~lRd~y~---------------~~~~~e~yl~~s~i~~~~rnf~~ 277 (711)
T COG1747 214 KYSENENWTEAIRILKHILEHDEK-DVWARKEIIENLRDKYR---------------GHSQLEEYLKISNISQSGRNFFE 277 (711)
T ss_pred HhccccCHHHHHHHHHHHhhhcch-hhhHHHHHHHHHHHHhc---------------cchhHHHHHHhcchhhccccHHH
Confidence 344455566666666665554432 33333333222211100 11122223333333333456777
Q ss_pred HHHHHHHHHhhcCCC
Q 003563 332 AIMFFYKALDRFEDN 346 (810)
Q Consensus 332 A~~~~~~al~~~p~~ 346 (810)
++.-|++.+..+.+|
T Consensus 278 ~l~dFek~m~f~eGn 292 (711)
T COG1747 278 ALNDFEKLMHFDEGN 292 (711)
T ss_pred HHHHHHHHheeccCc
Confidence 777888887776655
No 348
>COG5191 Uncharacterized conserved protein, contains HAT (Half-A-TPR) repeat [General function prediction only]
Probab=91.98 E-value=0.36 Score=46.86 Aligned_cols=77 Identities=13% Similarity=0.109 Sum_probs=37.2
Q ss_pred HHcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHH-HHHHHHHcCChHHHHHHHHHHHhhCCCCCC
Q 003563 128 IRAEPKDISLRIHLASFYVEIGDYEKAAESYEQIQKLFPDNVDATKT-GAQLFLKCGQTARSIGILEEYLKVHPSDAD 204 (810)
Q Consensus 128 l~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~-la~~~~~~g~~~~A~~~~~~~l~~~p~~~~ 204 (810)
....|+++..|...+......|-+.+--..|.++++.+|.+.+.|.. -+.-+...++++.+...+.++++.+|+++.
T Consensus 100 tnkff~D~k~w~~y~~Y~~k~k~y~~~~nI~~~~l~khP~nvdlWI~~c~~e~~~~ani~s~Ra~f~~glR~N~~~p~ 177 (435)
T COG5191 100 TNKFFNDPKIWSQYAAYVIKKKMYGEMKNIFAECLTKHPLNVDLWIYCCAFELFEIANIESSRAMFLKGLRMNSRSPR 177 (435)
T ss_pred hhcCCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCceeeeeeccchhhhhccHHHHHHHHHhhhccCCCCch
Confidence 33344444444444444444444555555555555555555554443 223334445555555555555555555443
No 349
>KOG2581 consensus 26S proteasome regulatory complex, subunit RPN3/PSMD3 [Posttranslational modification, protein turnover, chaperones]
Probab=91.34 E-value=6.5 Score=40.18 Aligned_cols=142 Identities=15% Similarity=0.093 Sum_probs=92.7
Q ss_pred CCCCHHHHHHHHH--HHHHHHcCCHHHHHHHHHHHHHhCC-C--------ChHHHHHHHHHHHHcCChHHHHHHHHHHHh
Q 003563 27 NKLSPGVTKMLGE--ASLQYAYGNFEQAISLLKEVVRLSP-N--------LPETYNTLGLAHSALGNHKSAFDFYVIAAH 95 (810)
Q Consensus 27 ~~~~~~~~~~l~~--a~~~~~~g~~~~A~~~~~~~l~~~p-~--------~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~ 95 (810)
.++++++..++.. ...++...++.+|..+-+..+..-. . .+..|+.+..+|...|+...-...+...+.
T Consensus 118 k~~~~Ei~aY~~lLv~Lfl~d~K~~kea~~~~~~~l~~i~~~nrRtlD~i~ak~~fy~~l~~E~~~~l~~~rs~l~~~lr 197 (493)
T KOG2581|consen 118 KPLPAEIEAYLYLLVLLFLIDQKEYKEADKISDALLASISIQNRRTLDLIAAKLYFYLYLSYELEGRLADIRSFLHALLR 197 (493)
T ss_pred CCchHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHhcchhhHHHHHHHHHHHHHHHHHhhcchHHHHHHHHHHHH
Confidence 4566677776554 3344556889999988877654311 1 345677788888888886665555554443
Q ss_pred cC-----C-CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHH--cCCCC--HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC
Q 003563 96 LS-----P-KDSALWKQLLTFAVQKGDTAQAMYYIRQAIR--AEPKD--ISLRIHLASFYVEIGDYEKAAESYEQIQKLF 165 (810)
Q Consensus 96 ~~-----p-~~~~~~~~la~~~~~~g~~~~A~~~~~~al~--~~p~~--~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~ 165 (810)
.. . ........+-+.|...+.|++|.....+..- ...++ +..++.+|.+..-+++|..|.+++-+++...
T Consensus 198 tAtLrhd~e~qavLiN~LLr~yL~n~lydqa~~lvsK~~~pe~~snne~ARY~yY~GrIkaiqldYssA~~~~~qa~rka 277 (493)
T KOG2581|consen 198 TATLRHDEEGQAVLINLLLRNYLHNKLYDQADKLVSKSVYPEAASNNEWARYLYYLGRIKAIQLDYSSALEYFLQALRKA 277 (493)
T ss_pred HhhhcCcchhHHHHHHHHHHHHhhhHHHHHHHHHhhcccCccccccHHHHHHHHHHhhHHHhhcchhHHHHHHHHHHHhC
Confidence 21 1 1123345566777778888888887777642 11112 3456778888888888888888888888888
Q ss_pred CCC
Q 003563 166 PDN 168 (810)
Q Consensus 166 p~~ 168 (810)
|.+
T Consensus 278 pq~ 280 (493)
T KOG2581|consen 278 PQH 280 (493)
T ss_pred cch
Confidence 864
No 350
>KOG2422 consensus Uncharacterized conserved protein [Function unknown]
Probab=91.19 E-value=18 Score=38.94 Aligned_cols=160 Identities=16% Similarity=0.108 Sum_probs=96.5
Q ss_pred cCCHHHHHHHHHHHHHc------------CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh-----CC----------
Q 003563 114 KGDTAQAMYYIRQAIRA------------EPKDISLRIHLASFYVEIGDYEKAAESYEQIQKL-----FP---------- 166 (810)
Q Consensus 114 ~g~~~~A~~~~~~al~~------------~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~-----~p---------- 166 (810)
...|++|...|.-+... .|-+.+.+..++.+...+|+.+-|....++++=. .|
T Consensus 251 s~sYeqaq~~F~~av~~~d~n~v~~lL~ssPYHvdsLLqva~~~r~qgD~e~aadLieR~Ly~~d~a~hp~F~~~sg~cR 330 (665)
T KOG2422|consen 251 SNSYEQAQRDFYLAVIVHDPNNVLILLISSPYHVDSLLQVADIFRFQGDREMAADLIERGLYVFDRALHPNFIPFSGNCR 330 (665)
T ss_pred chHHHHHHHHHHHHHhhcCCcceeeeeccCCcchhHHHHHHHHHHHhcchhhHHHHHHHHHHHHHHHhcccccccccccc
Confidence 34578888888887763 3666788999999999999999888888877632 12
Q ss_pred ------CCH---HHHHHHHHHHHHcCChHHHHHHHHHHHhhCCC-CCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhc
Q 003563 167 ------DNV---DATKTGAQLFLKCGQTARSIGILEEYLKVHPS-DADLSVIDLLVAILMENNAYEKTLQHIEHAQIVRF 236 (810)
Q Consensus 167 ------~~~---~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~-~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~ 236 (810)
.|. -+++.....+.+.|-+..|.++.+-+++++|. ++-. +.+.+-....+..+|+=-+..++..-....
T Consensus 331 L~y~~~eNR~FyL~l~r~m~~l~~RGC~rTA~E~cKlllsLdp~eDPl~-~l~~ID~~ALrareYqwiI~~~~~~e~~n~ 409 (665)
T KOG2422|consen 331 LPYIYPENRQFYLALFRYMQSLAQRGCWRTALEWCKLLLSLDPSEDPLG-ILYLIDIYALRAREYQWIIELSNEPENMNK 409 (665)
T ss_pred CcccchhhHHHHHHHHHHHHHHHhcCChHHHHHHHHHHhhcCCcCCchh-HHHHHHHHHHHHHhHHHHHHHHHHHHhhcc
Confidence 221 12334445566788999999999999999988 5542 333333334455666666666555432210
Q ss_pred CCCCCcHHHHHHHHHHHHhcCC---HHHHHHHHHHhhccCC
Q 003563 237 SGKELPLKLKVKAGICYLRLGN---MEKAEILFADLQWKNA 274 (810)
Q Consensus 237 ~~~~~~~~~~~~la~~~~~~g~---~~~A~~~~~~~~~~~~ 274 (810)
-..-.+...-..++..+..... -..|...+.+++...|
T Consensus 410 l~~~PN~~yS~AlA~f~l~~~~~~~rqsa~~~l~qAl~~~P 450 (665)
T KOG2422|consen 410 LSQLPNFGYSLALARFFLRKNEEDDRQSALNALLQALKHHP 450 (665)
T ss_pred HhhcCCchHHHHHHHHHHhcCChhhHHHHHHHHHHHHHhCc
Confidence 0001111222334444444443 3456666666665554
No 351
>KOG1310 consensus WD40 repeat protein [General function prediction only]
Probab=91.04 E-value=0.64 Score=48.62 Aligned_cols=85 Identities=19% Similarity=0.102 Sum_probs=40.0
Q ss_pred HHHHHHHHHHHHcCCCCHHHHHHHHHHHHHc---CCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCChHHHHHHHHH
Q 003563 118 AQAMYYIRQAIRAEPKDISLRIHLASFYVEI---GDYEKAAESYEQIQKLFPDNVDATKTGAQLFLKCGQTARSIGILEE 194 (810)
Q Consensus 118 ~~A~~~~~~al~~~p~~~~~~~~la~~~~~~---g~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~ 194 (810)
..|+..|.+++...|.....+.+.+.++.+. |+.-.|+.-...++.++|....+++.|+.++...+++.+|++....
T Consensus 391 ~~~i~~~s~a~q~~~~~~~~l~nraa~lmkRkW~~d~~~AlrDch~Alrln~s~~kah~~la~aL~el~r~~eal~~~~a 470 (758)
T KOG1310|consen 391 SGAISHYSRAIQYVPDAIYLLENRAAALMKRKWRGDSYLALRDCHVALRLNPSIQKAHFRLARALNELTRYLEALSCHWA 470 (758)
T ss_pred HHHHHHHHHHhhhccchhHHHHhHHHHHHhhhccccHHHHHHhHHhhccCChHHHHHHHHHHHHHHHHhhHHHhhhhHHH
Confidence 3344444444444444444444444444332 2333444444444555555555555555555555555555555544
Q ss_pred HHhhCCCC
Q 003563 195 YLKVHPSD 202 (810)
Q Consensus 195 ~l~~~p~~ 202 (810)
+....|.+
T Consensus 471 lq~~~Ptd 478 (758)
T KOG1310|consen 471 LQMSFPTD 478 (758)
T ss_pred HhhcCchh
Confidence 44444433
No 352
>KOG3807 consensus Predicted membrane protein ST7 (tumor suppressor in humans) [General function prediction only]
Probab=90.99 E-value=18 Score=35.96 Aligned_cols=163 Identities=9% Similarity=0.019 Sum_probs=93.5
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHhhCCCCCChHHHHHHHHHHHH
Q 003563 138 RIHLASFYVEIGDYEKAAESYEQIQKLFPDNVDATKTGAQLFLKCGQTARSIGILEEYLKVHPSDADLSVIDLLVAILME 217 (810)
Q Consensus 138 ~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~~~la~~~~~ 217 (810)
-+.+.+...+..+..+-++.-..+++++|+...++..++.-- ..-..+|..+++++++..... +........
T Consensus 187 e~eIMQ~AWRERnp~~RI~~A~~ALeIN~eCA~AyvLLAEEE--a~Ti~~AE~l~k~ALka~e~~------yr~sqq~qh 258 (556)
T KOG3807|consen 187 EDEIMQKAWRERNPPARIKAAYQALEINNECATAYVLLAEEE--ATTIVDAERLFKQALKAGETI------YRQSQQCQH 258 (556)
T ss_pred HHHHHHHHHHhcCcHHHHHHHHHHHhcCchhhhHHHhhhhhh--hhhHHHHHHHHHHHHHHHHHH------HhhHHHHhh
Confidence 344555555666777777777788888888777777776532 234566777777776643211 111111111
Q ss_pred cCCHHHHHHHHHHHHHHhcCCCCCcHHHHHHHHHHHHhcCCHHHHHHHHHHhhccCCc-hhHhHHHHHHHHHHHcCCcHH
Q 003563 218 NNAYEKTLQHIEHAQIVRFSGKELPLKLKVKAGICYLRLGNMEKAEILFADLQWKNAI-DHADLITEVADTLMSLGHSNS 296 (810)
Q Consensus 218 ~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~-~~~~~~~~la~~~~~~~~~~~ 296 (810)
.|...+|.. ..+......+.-.++.|..++|+..+|.+.++.+.+..|- ....+.-++...+....-|.+
T Consensus 259 ~~~~~da~~---------rRDtnvl~YIKRRLAMCARklGrlrEA~K~~RDL~ke~pl~t~lniheNLiEalLE~QAYAD 329 (556)
T KOG3807|consen 259 QSPQHEAQL---------RRDTNVLVYIKRRLAMCARKLGRLREAVKIMRDLMKEFPLLTMLNIHENLLEALLELQAYAD 329 (556)
T ss_pred hccchhhhh---------hcccchhhHHHHHHHHHHHHhhhHHHHHHHHHHHhhhccHHHHHHHHHHHHHHHHHHHHHHH
Confidence 221111110 1111223345567888999999999999999998766652 123345566666666666666
Q ss_pred HHHHHHHHHhccCCCCHHHHH
Q 003563 297 ALKYYHFLETNAGTDNGYLYL 317 (810)
Q Consensus 297 A~~~~~~~~~~~~~~~~~~~~ 317 (810)
...++.+.-+...|..+...+
T Consensus 330 vqavLakYDdislPkSA~icY 350 (556)
T KOG3807|consen 330 VQAVLAKYDDISLPKSAAICY 350 (556)
T ss_pred HHHHHHhhccccCcchHHHHH
Confidence 666665555444455544433
No 353
>PRK13184 pknD serine/threonine-protein kinase; Reviewed
Probab=90.91 E-value=40 Score=39.93 Aligned_cols=98 Identities=18% Similarity=0.095 Sum_probs=77.6
Q ss_pred HHHHHHHcCChHHHHHHHHHHHhcCCCCH---HHHHHHHHHHHHc----C---CHHHHHHHHHHHHHcCCCCHHHHHHHH
Q 003563 73 LGLAHSALGNHKSAFDFYVIAAHLSPKDS---ALWKQLLTFAVQK----G---DTAQAMYYIRQAIRAEPKDISLRIHLA 142 (810)
Q Consensus 73 l~~~~~~~g~~~~A~~~~~~a~~~~p~~~---~~~~~la~~~~~~----g---~~~~A~~~~~~al~~~p~~~~~~~~la 142 (810)
...++...+.|+.|+..|++.....|... ++.+..|.....+ | .+++|+..|++.- -.|.-|--+...|
T Consensus 481 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~ 559 (932)
T PRK13184 481 VPDAFLAEKLYDQALIFYRRIRESFPGRKEGYEAQFRLGITLLEKASEQGDPRDFTQALSEFSYLH-GGVGAPLEYLGKA 559 (932)
T ss_pred CcHHHHhhHHHHHHHHHHHHHhhcCCCcccchHHHHHhhHHHHHHHHhcCChHHHHHHHHHHHHhc-CCCCCchHHHhHH
Confidence 34567778899999999999998888654 5677777766543 3 4677777777654 3466666788899
Q ss_pred HHHHHcCCHHHHHHHHHHHHHhCCCCHHH
Q 003563 143 SFYVEIGDYEKAAESYEQIQKLFPDNVDA 171 (810)
Q Consensus 143 ~~~~~~g~~~~A~~~~~~~l~~~p~~~~~ 171 (810)
.+|.++|++++-+++|.-+++..|..|..
T Consensus 560 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 588 (932)
T PRK13184 560 LVYQRLGEYNEEIKSLLLALKRYSQHPEI 588 (932)
T ss_pred HHHHHhhhHHHHHHHHHHHHHhcCCCCcc
Confidence 99999999999999999999999998754
No 354
>KOG4814 consensus Uncharacterized conserved protein [Function unknown]
Probab=90.73 E-value=2.5 Score=45.64 Aligned_cols=96 Identities=14% Similarity=0.145 Sum_probs=58.1
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC------HHHHHHHHHHHHHcCChHHHHHHHHHHHhhCCCCCChHHHHH
Q 003563 137 LRIHLASFYVEIGDYEKAAESYEQIQKLFPDN------VDATKTGAQLFLKCGQTARSIGILEEYLKVHPSDADLSVIDL 210 (810)
Q Consensus 137 ~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~------~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~~~ 210 (810)
.+++-|.-.++..+|..+++.|...+...|.+ ......++.+|..+.+.+.|.++++.+-+.+|.++- .-..
T Consensus 356 iLWn~A~~~F~~~~Y~~s~~~y~~Sl~~i~~D~~~~~FaK~qR~l~~CYL~L~QLD~A~E~~~EAE~~d~~~~l--~q~~ 433 (872)
T KOG4814|consen 356 LLWNTAKKLFKMEKYVVSIRFYKLSLKDIISDNYSDRFAKIQRALQVCYLKLEQLDNAVEVYQEAEEVDRQSPL--CQLL 433 (872)
T ss_pred HHHHhhHHHHHHHHHHHHHHHHHHHHHhccchhhhhHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHhhccccHH--HHHH
Confidence 44555566666666666777666666665544 234556666666666777777777776666666553 2334
Q ss_pred HHHHHHHcCCHHHHHHHHHHHHHH
Q 003563 211 LVAILMENNAYEKTLQHIEHAQIV 234 (810)
Q Consensus 211 la~~~~~~g~~~~A~~~~~~~~~~ 234 (810)
...+....|.-++|+.........
T Consensus 434 ~~~~~~~E~~Se~AL~~~~~~~s~ 457 (872)
T KOG4814|consen 434 MLQSFLAEDKSEEALTCLQKIKSS 457 (872)
T ss_pred HHHHHHHhcchHHHHHHHHHHHhh
Confidence 444555566666666666665544
No 355
>COG5159 RPN6 26S proteasome regulatory complex component [Posttranslational modification, protein turnover, chaperones]
Probab=90.70 E-value=17 Score=35.34 Aligned_cols=272 Identities=14% Similarity=0.075 Sum_probs=147.3
Q ss_pred HHHHHHHHHcCChHHHHHHHHHHHhcCCC--------CHHHHHHHHHHHHHcCCHHHHHHHHHH---HHHcC--CCCHHH
Q 003563 71 NTLGLAHSALGNHKSAFDFYVIAAHLSPK--------DSALWKQLLTFAVQKGDTAQAMYYIRQ---AIRAE--PKDISL 137 (810)
Q Consensus 71 ~~l~~~~~~~g~~~~A~~~~~~a~~~~p~--------~~~~~~~la~~~~~~g~~~~A~~~~~~---al~~~--p~~~~~ 137 (810)
..++.-....+++++|+..|.+.+..... .......++.+|...|++..--..... +.... |.....
T Consensus 7 le~a~~~v~~~~~~~ai~~yk~iL~kg~s~dek~~nEqE~tvlel~~lyv~~g~~~~l~~~i~~sre~m~~ftk~k~~Ki 86 (421)
T COG5159 7 LELANNAVKSNDIEKAIGEYKRILGKGVSKDEKTLNEQEATVLELFKLYVSKGDYCSLGDTITSSREAMEDFTKPKITKI 86 (421)
T ss_pred HHHHHHhhhhhhHHHHHHHHHHHhcCCCChhhhhhhHHHHHHHHHHHHHHhcCCcchHHHHHHhhHHHHHHhcchhHHHH
Confidence 45677777889999999999998876321 224567889999999987643333322 22211 222222
Q ss_pred HHHHHHHH-HHcCCHHHHHHHHHHHHHhCCCCH------HHHHHHHHHHHHcCChHHHHHHHHHHHhh----CCCCCChH
Q 003563 138 RIHLASFY-VEIGDYEKAAESYEQIQKLFPDNV------DATKTGAQLFLKCGQTARSIGILEEYLKV----HPSDADLS 206 (810)
Q Consensus 138 ~~~la~~~-~~~g~~~~A~~~~~~~l~~~p~~~------~~~~~la~~~~~~g~~~~A~~~~~~~l~~----~p~~~~~~ 206 (810)
...+..-+ .....++.-+..+...++...... ..-..++.++++.|.|.+|+......+.. +..-.-..
T Consensus 87 irtLiekf~~~~dsl~dqi~v~~~~iewA~rEkr~fLr~~Le~Kli~l~y~~~~YsdalalIn~ll~ElKk~DDK~~Li~ 166 (421)
T COG5159 87 IRTLIEKFPYSSDSLEDQIKVLTALIEWADREKRKFLRLELECKLIYLLYKTGKYSDALALINPLLHELKKYDDKINLIT 166 (421)
T ss_pred HHHHHHhcCCCCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHhhcCccceee
Confidence 22221111 122344555555555544322211 23345677888999999999887766542 21111112
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHhcCC-CCC--cHHHHHHHHHHHHhcCCHHHHHHHHHHhhccCCc--hhHhH-
Q 003563 207 VIDLLVAILMENNAYEKTLQHIEHAQIVRFSG-KEL--PLKLKVKAGICYLRLGNMEKAEILFADLQWKNAI--DHADL- 280 (810)
Q Consensus 207 ~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~-~~~--~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~--~~~~~- 280 (810)
++..-..+|....+..++...+..+......- .|. ...+-..-|..++...+|..|..+|-++++.... .+..+
T Consensus 167 vhllESKvyh~irnv~KskaSLTaArt~Ans~YCPpqlqa~lDL~sGIlhcdd~dyktA~SYF~Ea~Egft~l~~d~kAc 246 (421)
T COG5159 167 VHLLESKVYHEIRNVSKSKASLTAARTLANSAYCPPQLQAQLDLLSGILHCDDRDYKTASSYFIEALEGFTLLKMDVKAC 246 (421)
T ss_pred hhhhhHHHHHHHHhhhhhhhHHHHHHHHhhccCCCHHHHHHHHHhccceeeccccchhHHHHHHHHHhccccccchHHHH
Confidence 55566778888888888877777665442111 111 1233334466677778888998888887664321 12222
Q ss_pred ----HHHHHHHHHHcCCcHHHHHHHHH--HHhccCCCCHHHHHHHHHHHH--HccCHHHHHHHHHHHHhhcC
Q 003563 281 ----ITEVADTLMSLGHSNSALKYYHF--LETNAGTDNGYLYLKLAECYL--SLKERAHAIMFFYKALDRFE 344 (810)
Q Consensus 281 ----~~~la~~~~~~~~~~~A~~~~~~--~~~~~~~~~~~~~~~la~~~~--~~g~~~~A~~~~~~al~~~p 344 (810)
|..+..+. .+..++--..+.. .++.-......+....+..+. .+.++..|+..|..-+..+|
T Consensus 247 ~sLkYmlLSkIM--lN~~~evk~vl~~K~t~~~y~~r~I~am~avaea~~NRsL~df~~aL~qY~~el~~D~ 316 (421)
T COG5159 247 VSLKYMLLSKIM--LNRREEVKAVLRNKNTLKHYDDRMIRAMLAVAEAFGNRSLKDFSDALAQYSDELHQDS 316 (421)
T ss_pred HHHHHHHHHHHH--HhhHHHHHHHHccchhHhhhhhhhHHHHHHHHHHhCCCcHhhHHHHHHHhhHHhccCH
Confidence 22223332 2333333333321 111112234455556666554 34567788877777665554
No 356
>KOG1839 consensus Uncharacterized protein CLU1/cluA/TIF31 involved in mitochondrial morphology/distribution, also found associated with eIF-3 [General function prediction only]
Probab=90.67 E-value=3.3 Score=48.93 Aligned_cols=129 Identities=18% Similarity=0.199 Sum_probs=71.1
Q ss_pred HHHHHHHHHHcCChHHHHH------HHH-HHHhcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHc--------CCCC
Q 003563 70 YNTLGLAHSALGNHKSAFD------FYV-IAAHLSPKDSALWKQLLTFAVQKGDTAQAMYYIRQAIRA--------EPKD 134 (810)
Q Consensus 70 ~~~l~~~~~~~g~~~~A~~------~~~-~a~~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~--------~p~~ 134 (810)
....|......|.+.+|.+ .+. ..-.+.|.....+..++.++...|+.++|+..-.++.-. .|+.
T Consensus 935 ~~e~gq~~~~e~~~~~~~~~~~slnl~~~v~~~~h~~~~~~~~~La~l~~~~~d~~~Ai~~~~ka~ii~eR~~g~ds~~t 1014 (1236)
T KOG1839|consen 935 SPEQGQEALLEDGFSEAYELPESLNLLNNVMGVLHPEVASKYRSLAKLSNRLGDNQEAIAQQRKACIISERVLGKDSPNT 1014 (1236)
T ss_pred hhhhhhhhhcccchhhhhhhhhhhhHHHHhhhhcchhHHHHHHHHHHHHhhhcchHHHHHhcccceeeechhccCCCHHH
Confidence 3444555555566665555 332 222334556666666777777777777776665555432 1333
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--------CCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHhh
Q 003563 135 ISLRIHLASFYVEIGDYEKAAESYEQIQKL--------FPDNVDATKTGAQLFLKCGQTARSIGILEEYLKV 198 (810)
Q Consensus 135 ~~~~~~la~~~~~~g~~~~A~~~~~~~l~~--------~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~ 198 (810)
...+.+++...+..++...|+..+.++..+ .|.-.....+++.++...++++.|+.+++.+.+.
T Consensus 1015 ~~~y~nlal~~f~~~~~~~al~~~~ra~~l~~Ls~ge~hP~~a~~~~nle~l~~~v~e~d~al~~le~A~a~ 1086 (1236)
T KOG1839|consen 1015 KLAYGNLALYEFAVKNLSGALKSLNRALKLKLLSSGEDHPPTALSFINLELLLLGVEEADTALRYLESALAK 1086 (1236)
T ss_pred HHHhhHHHHHHHhccCccchhhhHHHHHHhhccccCCCCCchhhhhhHHHHHHhhHHHHHHHHHHHHHHHHH
Confidence 445556666666666666666666665543 1222233445555555666666666666666553
No 357
>KOG2114 consensus Vacuolar assembly/sorting protein PEP5/VPS11 [Intracellular trafficking, secretion, and vesicular transport]
Probab=90.51 E-value=25 Score=39.78 Aligned_cols=247 Identities=13% Similarity=0.070 Sum_probs=123.6
Q ss_pred HHHHHHcCChHHHHHHHHHHHhcCCCC-HHHHHHHHHHHHHcCCHHHHHHHHHHHHHc-CCCCHHHHHHHHHHHHHcCCH
Q 003563 74 GLAHSALGNHKSAFDFYVIAAHLSPKD-SALWKQLLTFAVQKGDTAQAMYYIRQAIRA-EPKDISLRIHLASFYVEIGDY 151 (810)
Q Consensus 74 ~~~~~~~g~~~~A~~~~~~a~~~~p~~-~~~~~~la~~~~~~g~~~~A~~~~~~al~~-~p~~~~~~~~la~~~~~~g~~ 151 (810)
-.+..+..-|+-|+...+. ...+++. ...+...|.-++..|++++|...|-+.+.. +|...-- -+......
T Consensus 341 L~iL~kK~ly~~Ai~LAk~-~~~d~d~~~~i~~kYgd~Ly~Kgdf~~A~~qYI~tI~~le~s~Vi~------kfLdaq~I 413 (933)
T KOG2114|consen 341 LDILFKKNLYKVAINLAKS-QHLDEDTLAEIHRKYGDYLYGKGDFDEATDQYIETIGFLEPSEVIK------KFLDAQRI 413 (933)
T ss_pred HHHHHHhhhHHHHHHHHHh-cCCCHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHcccCChHHHHH------HhcCHHHH
Confidence 3445555666666665543 2222222 345667788888888888888888887753 2321111 11222233
Q ss_pred HHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHhhCCCCCChH-HHHHHHHHHHHcCCHHHHHHHHHH
Q 003563 152 EKAAESYEQIQKLFPDNVDATKTGAQLFLKCGQTARSIGILEEYLKVHPSDADLS-VIDLLVAILMENNAYEKTLQHIEH 230 (810)
Q Consensus 152 ~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~-~~~~la~~~~~~g~~~~A~~~~~~ 230 (810)
.+-..+++.+.+..-.+.+-...|-.+|.++++.++-.+..+ ..+ ...+. -....-.++...+-.++|.-.-.+
T Consensus 414 knLt~YLe~L~~~gla~~dhttlLLncYiKlkd~~kL~efI~----~~~-~g~~~fd~e~al~Ilr~snyl~~a~~LA~k 488 (933)
T KOG2114|consen 414 KNLTSYLEALHKKGLANSDHTTLLLNCYIKLKDVEKLTEFIS----KCD-KGEWFFDVETALEILRKSNYLDEAELLATK 488 (933)
T ss_pred HHHHHHHHHHHHcccccchhHHHHHHHHHHhcchHHHHHHHh----cCC-CcceeeeHHHHHHHHHHhChHHHHHHHHHH
Confidence 334445555555544455555667778888888776544433 333 22210 011233344444444555444333
Q ss_pred HHHHhcCCCCCcHHHHHHHHHHHHhcCCHHHHHHHHHHhhccCCchhHhHHHHHHHHHHHcCCcHHHHHHHHHHHhccC-
Q 003563 231 AQIVRFSGKELPLKLKVKAGICYLRLGNMEKAEILFADLQWKNAIDHADLITEVADTLMSLGHSNSALKYYHFLETNAG- 309 (810)
Q Consensus 231 ~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~- 309 (810)
.-. .. ..+-.++...+++++|+.++..+- ++.........|..++... +++-...+-+......
T Consensus 489 ~~~--------he---~vl~ille~~~ny~eAl~yi~slp---~~e~l~~l~kyGk~Ll~h~-P~~t~~ili~~~t~~~~ 553 (933)
T KOG2114|consen 489 FKK--------HE---WVLDILLEDLHNYEEALRYISSLP---ISELLRTLNKYGKILLEHD-PEETMKILIELITELNS 553 (933)
T ss_pred hcc--------CH---HHHHHHHHHhcCHHHHHHHHhcCC---HHHHHHHHHHHHHHHHhhC-hHHHHHHHHHHHhhcCC
Confidence 211 11 123345667788888888888762 2234455566676666543 4444444444333212
Q ss_pred CCCHHHH----HHHHHHHHHccCHHHHHHHHHHHHhhcCCCH
Q 003563 310 TDNGYLY----LKLAECYLSLKERAHAIMFFYKALDRFEDNI 347 (810)
Q Consensus 310 ~~~~~~~----~~la~~~~~~g~~~~A~~~~~~al~~~p~~~ 347 (810)
+...... ...-.+..-.+++..-..+++...+..|+.+
T Consensus 554 ~~~~~~~s~~~~~~~~i~if~~~~~~~~~Fl~~~~E~s~~s~ 595 (933)
T KOG2114|consen 554 QGKGKSLSNIPDSIEFIGIFSQNYQILLNFLESMSEISPDSE 595 (933)
T ss_pred CCCCchhhcCccchhheeeeccCHHHHHHHHHHHHhcCCCch
Confidence 1111111 1111222334555555555555555555543
No 358
>COG5191 Uncharacterized conserved protein, contains HAT (Half-A-TPR) repeat [General function prediction only]
Probab=90.35 E-value=0.58 Score=45.50 Aligned_cols=88 Identities=13% Similarity=0.116 Sum_probs=67.9
Q ss_pred HHHHHHhcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHHHHHH-HHHHHHHcCCHHHHHHHHHHHHHhCCC
Q 003563 89 FYVIAAHLSPKDSALWKQLLTFAVQKGDTAQAMYYIRQAIRAEPKDISLRIH-LASFYVEIGDYEKAAESYEQIQKLFPD 167 (810)
Q Consensus 89 ~~~~a~~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~-la~~~~~~g~~~~A~~~~~~~l~~~p~ 167 (810)
.|.++....|+++..|...+......|.+.+--..|.+++..+|.+++.|.. -+.-+...++.+.+...|.+++..+|+
T Consensus 95 ~~~R~tnkff~D~k~w~~y~~Y~~k~k~y~~~~nI~~~~l~khP~nvdlWI~~c~~e~~~~ani~s~Ra~f~~glR~N~~ 174 (435)
T COG5191 95 ELYRSTNKFFNDPKIWSQYAAYVIKKKMYGEMKNIFAECLTKHPLNVDLWIYCCAFELFEIANIESSRAMFLKGLRMNSR 174 (435)
T ss_pred eeehhhhcCCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCceeeeeeccchhhhhccHHHHHHHHHhhhccCCC
Confidence 3445556677888888888887777888888888888888888888888776 455667788888888888888888888
Q ss_pred CHHHHHHHH
Q 003563 168 NVDATKTGA 176 (810)
Q Consensus 168 ~~~~~~~la 176 (810)
+|..|...-
T Consensus 175 ~p~iw~eyf 183 (435)
T COG5191 175 SPRIWIEYF 183 (435)
T ss_pred CchHHHHHH
Confidence 887766543
No 359
>PF07721 TPR_4: Tetratricopeptide repeat; InterPro: IPR011717 This entry includes tetratricopeptide-like repeats not detected by the IPR001440 from INTERPRO, IPR013105 from INTERPRO and IPR011716 from INTERPRO models. The tetratricopeptide repeat (TPR) motif is a protein-protein interaction module found in multiple copies in a number of functionally different proteins that facilitates specific interactions with a partner protein(s) [].; GO: 0042802 identical protein binding
Probab=90.27 E-value=0.33 Score=28.11 Aligned_cols=25 Identities=24% Similarity=0.145 Sum_probs=22.4
Q ss_pred hhhhhHHHHHHHhChhhHHHHHHHH
Q 003563 723 EALYNIARACHHVGLVSLAASYYEK 747 (810)
Q Consensus 723 e~~ynlgr~~~~lg~~~~Ai~~Y~~ 747 (810)
.+.+++|++++..|..+.|...+++
T Consensus 2 ~a~~~la~~~~~~G~~~eA~~~l~~ 26 (26)
T PF07721_consen 2 RARLALARALLAQGDPDEAERLLRR 26 (26)
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHhC
Confidence 5789999999999999999998763
No 360
>COG2912 Uncharacterized conserved protein [Function unknown]
Probab=90.25 E-value=3 Score=40.58 Aligned_cols=66 Identities=17% Similarity=0.144 Sum_probs=42.6
Q ss_pred HHHHHHcCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHH
Q 003563 108 LTFAVQKGDTAQAMYYIRQAIRAEPKDISLRIHLASFYVEIGDYEKAAESYEQIQKLFPDNVDATK 173 (810)
Q Consensus 108 a~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~ 173 (810)
=..+...++++.|..+.++.+..+|.++.-+...|.+|.++|.+.-|++.++..++..|+++.+-.
T Consensus 188 k~~~~~e~~~~~al~~~~r~l~l~P~dp~eirDrGliY~ql~c~~vAl~dl~~~~~~~P~~~~a~~ 253 (269)
T COG2912 188 KAALLRELQWELALRVAERLLDLNPEDPYEIRDRGLIYAQLGCYHVALEDLSYFVEHCPDDPIAEM 253 (269)
T ss_pred HHHHHHhhchHHHHHHHHHHHhhCCCChhhccCcHHHHHhcCCchhhHHHHHHHHHhCCCchHHHH
Confidence 344555666666666666666666666666666666666666666666666666666666655443
No 361
>PF13374 TPR_10: Tetratricopeptide repeat; PDB: 3CEQ_B 3EDT_H 3NF1_A.
Probab=90.03 E-value=0.71 Score=30.31 Aligned_cols=29 Identities=21% Similarity=0.208 Sum_probs=22.7
Q ss_pred HHHHHHHHHHHHccCHHHHHHHHHHHHhh
Q 003563 314 YLYLKLAECYLSLKERAHAIMFFYKALDR 342 (810)
Q Consensus 314 ~~~~~la~~~~~~g~~~~A~~~~~~al~~ 342 (810)
.++..+|.+|...|++++|..++++++.+
T Consensus 3 ~~~~~la~~~~~~g~~~~A~~~~~~al~~ 31 (42)
T PF13374_consen 3 SALNNLANAYRAQGRYEEALELLEEALEI 31 (42)
T ss_dssp HHHHHHHHHHHHCT-HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhhhhcchhhHHHHHHHHH
Confidence 46778888888888888888888888765
No 362
>PF11207 DUF2989: Protein of unknown function (DUF2989); InterPro: IPR021372 Some members in this bacterial family of proteins are annotated as lipoproteins however this cannot be confirmed.
Probab=89.92 E-value=3 Score=38.55 Aligned_cols=75 Identities=19% Similarity=0.154 Sum_probs=54.3
Q ss_pred CHHHHHHHHHHhhccCCchhHhHHHHHHHHHHHcCCcHHHHHHHHHHHhccCCC---CHHHHHHHHHHHHHccCHHHHH
Q 003563 258 NMEKAEILFADLQWKNAIDHADLITEVADTLMSLGHSNSALKYYHFLETNAGTD---NGYLYLKLAECYLSLKERAHAI 333 (810)
Q Consensus 258 ~~~~A~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~---~~~~~~~la~~~~~~g~~~~A~ 333 (810)
.-++|...|-++-....-+.++..+.+|..|. ..+.++|+.++-++++...++ +++++..++.++..+|+++.|-
T Consensus 121 ~d~~A~~~fL~~E~~~~l~t~elq~aLAtyY~-krD~~Kt~~ll~~~L~l~~~~~~~n~eil~sLas~~~~~~~~e~AY 198 (203)
T PF11207_consen 121 GDQEALRRFLQLEGTPELETAELQYALATYYT-KRDPEKTIQLLLRALELSNPDDNFNPEILKSLASIYQKLKNYEQAY 198 (203)
T ss_pred CcHHHHHHHHHHcCCCCCCCHHHHHHHHHHHH-ccCHHHHHHHHHHHHHhcCCCCCCCHHHHHHHHHHHHHhcchhhhh
Confidence 44567777766644443356777788887776 567888888888887764443 7888888888888888888774
No 363
>KOG3807 consensus Predicted membrane protein ST7 (tumor suppressor in humans) [General function prediction only]
Probab=89.80 E-value=23 Score=35.27 Aligned_cols=148 Identities=15% Similarity=0.095 Sum_probs=91.1
Q ss_pred HHHHHHHHHcCChHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHcCC
Q 003563 71 NTLGLAHSALGNHKSAFDFYVIAAHLSPKDSALWKQLLTFAVQKGDTAQAMYYIRQAIRAEPKDISLRIHLASFYVEIGD 150 (810)
Q Consensus 71 ~~l~~~~~~~g~~~~A~~~~~~a~~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~ 150 (810)
+.+-....+..+..+-++....+++++|....++..+|.-- ..-..+|...++++++... ..+...+.....|.
T Consensus 188 ~eIMQ~AWRERnp~~RI~~A~~ALeIN~eCA~AyvLLAEEE--a~Ti~~AE~l~k~ALka~e----~~yr~sqq~qh~~~ 261 (556)
T KOG3807|consen 188 DEIMQKAWRERNPPARIKAAYQALEINNECATAYVLLAEEE--ATTIVDAERLFKQALKAGE----TIYRQSQQCQHQSP 261 (556)
T ss_pred HHHHHHHHHhcCcHHHHHHHHHHHhcCchhhhHHHhhhhhh--hhhHHHHHHHHHHHHHHHH----HHHhhHHHHhhhcc
Confidence 44444555666777777888888888888888887776532 2335677888888876432 22222222233333
Q ss_pred HHHHHHHHHHHHHhCCCCH--HHHHHHHHHHHHcCChHHHHHHHHHHHhhCCCCCChHHHHHHHHHHHHcCCHHHHHHHH
Q 003563 151 YEKAAESYEQIQKLFPDNV--DATKTGAQLFLKCGQTARSIGILEEYLKVHPSDADLSVIDLLVAILMENNAYEKTLQHI 228 (810)
Q Consensus 151 ~~~A~~~~~~~l~~~p~~~--~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~~~la~~~~~~g~~~~A~~~~ 228 (810)
..+|. .+. ..+. -+...++.+..++|+..+|++.++...+..|-.....+..++.+.+....-|.+....+
T Consensus 262 ~~da~------~rR-Dtnvl~YIKRRLAMCARklGrlrEA~K~~RDL~ke~pl~t~lniheNLiEalLE~QAYADvqavL 334 (556)
T KOG3807|consen 262 QHEAQ------LRR-DTNVLVYIKRRLAMCARKLGRLREAVKIMRDLMKEFPLLTMLNIHENLLEALLELQAYADVQAVL 334 (556)
T ss_pred chhhh------hhc-ccchhhHHHHHHHHHHHHhhhHHHHHHHHHHHhhhccHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 22222 111 1222 23456788888999999999999988887775443445666777777776666665555
Q ss_pred HHH
Q 003563 229 EHA 231 (810)
Q Consensus 229 ~~~ 231 (810)
-+.
T Consensus 335 akY 337 (556)
T KOG3807|consen 335 AKY 337 (556)
T ss_pred Hhh
Confidence 544
No 364
>PRK12798 chemotaxis protein; Reviewed
Probab=89.38 E-value=30 Score=36.11 Aligned_cols=270 Identities=13% Similarity=0.057 Sum_probs=169.1
Q ss_pred CCCHHHHHHHHHHHHHHHcCCHHHHHH---HHHHH---H-Hh------CCCChHHHHHHHHHHHHcCChHHHHHHHHHHH
Q 003563 28 KLSPGVTKMLGEASLQYAYGNFEQAIS---LLKEV---V-RL------SPNLPETYNTLGLAHSALGNHKSAFDFYVIAA 94 (810)
Q Consensus 28 ~~~~~~~~~l~~a~~~~~~g~~~~A~~---~~~~~---l-~~------~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~ 94 (810)
..|-+...-++..+--...|+...-.. ++.++ + .. +|.|.. -+.+|...|--...++.+ +
T Consensus 32 ~~PyelvRSLQ~lQD~Va~Gd~~A~~~Qr~LL~~i~~~l~aa~~~vw~dprNv~----Aa~iy~lSGGnP~vlr~L---~ 104 (421)
T PRK12798 32 LEPYKLVRSLQLLQDSVAAGDHSAHEMQRFLLGTIDERLRAADPEVWDDPRNVD----AALIYLLSGGNPATLRKL---L 104 (421)
T ss_pred CCcHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHHhCCHHHhCCccchh----HHHhhHhcCCCHHHHHHH---H
Confidence 445566666666666777888654322 22222 2 22 333333 345666666555544443 3
Q ss_pred hcCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHc-CCCCHHHHHHHHH-HHHHcCCHHHHHHHHHHHHHhCCCCH--
Q 003563 95 HLSPK-DSALWKQLLTFAVQKGDTAQAMYYIRQAIRA-EPKDISLRIHLAS-FYVEIGDYEKAAESYEQIQKLFPDNV-- 169 (810)
Q Consensus 95 ~~~p~-~~~~~~~la~~~~~~g~~~~A~~~~~~al~~-~p~~~~~~~~la~-~~~~~g~~~~A~~~~~~~l~~~p~~~-- 169 (810)
..++. +.+.-..-|..-+-.|+-.+|...+...-.. -|.....+..|.. ......+..+|+..|+.+--..|...
T Consensus 105 ~~d~~~~~d~~L~~g~laY~~Gr~~~a~~~La~i~~~~l~~~lg~~laLv~a~l~~~~dP~~Al~~lD~aRLlaPGTLvE 184 (421)
T PRK12798 105 ARDKLGNFDQRLADGALAYLSGRGREARKLLAGVAPEYLPAELGAYLALVQGNLMVATDPATALKLLDQARLLAPGTLVE 184 (421)
T ss_pred HcCCCChhhHHHHHHHHHHHcCCHHHHHHHhhcCChhhcCchhhhHHHHHHHHHhcccCHHHHHHHHHHHHHhCCchHHH
Confidence 34432 4555566677777889999999888765332 2333334444443 34567789999999999999999863
Q ss_pred -HHHHHHHHHHHHcCChHHHHHHHHHHHhhCCCCCCh-HHHHHHHHHHHHcCCHHHHHHHHHHHHHHhcCCCCCcHHHHH
Q 003563 170 -DATKTGAQLFLKCGQTARSIGILEEYLKVHPSDADL-SVIDLLVAILMENNAYEKTLQHIEHAQIVRFSGKELPLKLKV 247 (810)
Q Consensus 170 -~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~-~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~ 247 (810)
.++..-..+....|+.+++..+-.+.+.....++-. ..+..++......++-. -...+...+...+ .+....+|.
T Consensus 185 EAALRRsi~la~~~g~~~rf~~la~~Y~rRF~~S~YA~~F~~~F~~~~~~~~d~~-~~~~l~~~ls~~d--~~~q~~lYL 261 (421)
T PRK12798 185 EAALRRSLFIAAQLGDADKFEALARNYLRRFRHSPYASQFAQRFVDLVVRLDDEI-RDARLVEILSFMD--PERQRELYL 261 (421)
T ss_pred HHHHHHhhHHHHhcCcHHHHHHHHHHHHHHhccCchHHHHHHHHHHHHHhccccc-cHHHHHHHHHhcC--chhHHHHHH
Confidence 344455556688999999999988888887776542 12333444444444222 2233555555533 445578899
Q ss_pred HHHHHHHhcCCHHHHHHHHHHhhccC---CchhHhHHHHHHHHHHHcCCcHHHHHHHHHHHhc
Q 003563 248 KAGICYLRLGNMEKAEILFADLQWKN---AIDHADLITEVADTLMSLGHSNSALKYYHFLETN 307 (810)
Q Consensus 248 ~la~~~~~~g~~~~A~~~~~~~~~~~---~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~ 307 (810)
.++..-.-.|+.+-|...-++++... ..+...+.+.-+-.-.-..++++|+..+..+-..
T Consensus 262 ~iAR~Ali~Gk~~lA~~As~~A~~L~~~~~~~~~ra~LY~aaa~v~s~~~~~al~~L~~I~~~ 324 (421)
T PRK12798 262 RIARAALIDGKTELARFASERALKLADPDSADAARARLYRGAALVASDDAESALEELSQIDRD 324 (421)
T ss_pred HHHHHHHHcCcHHHHHHHHHHHHHhccCCCcchHHHHHHHHHHccCcccHHHHHHHHhcCChh
Confidence 99999999999999888888865433 2234555666666667777899999988876543
No 365
>KOG0529 consensus Protein geranylgeranyltransferase type II, alpha subunit [Posttranslational modification, protein turnover, chaperones]
Probab=88.41 E-value=34 Score=35.49 Aligned_cols=144 Identities=10% Similarity=0.095 Sum_probs=93.9
Q ss_pred HHHHHHHHHcCCHH-HHHHHHHHHHHhCCCChHHHHHHHHHHHHc------------CChHHHHHHHHHHHhcCCCCHHH
Q 003563 37 LGEASLQYAYGNFE-QAISLLKEVVRLSPNLPETYNTLGLAHSAL------------GNHKSAFDFYVIAAHLSPKDSAL 103 (810)
Q Consensus 37 l~~a~~~~~~g~~~-~A~~~~~~~l~~~p~~~~~~~~l~~~~~~~------------g~~~~A~~~~~~a~~~~p~~~~~ 103 (810)
+..-......|.|+ +++++=.+.+..+|+...+|...-.++... .-.++-+.+...++..+|+...+
T Consensus 32 ~s~i~~~r~~~~yd~e~l~lt~~ll~~npe~~t~wN~Rr~~~~~r~~~~~~~~~ek~~~ld~eL~~~~~~L~~npksY~a 111 (421)
T KOG0529|consen 32 FSIIQKKREAKEYDEEHLELTSELLEKNPEFYTVWNYRRLIIEERLTRAQLEPLEKQALLDEELKYVESALKVNPKSYGA 111 (421)
T ss_pred HHHHHHHHhccccchHHHHHHHHHHhhCchhhhhhhhHHHHHHHhhhhhcCCHHHHHHhhHHHHHHHHHHHHhCchhHHH
Confidence 33334444555554 566667777888888777776554444322 13445566677777888888888
Q ss_pred HHHHHHHHHHcCC--HHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHc----CCHHHHHHHHHHHHHhCCCCHHHHHHHHH
Q 003563 104 WKQLLTFAVQKGD--TAQAMYYIRQAIRAEPKDISLRIHLASFYVEI----GDYEKAAESYEQIQKLFPDNVDATKTGAQ 177 (810)
Q Consensus 104 ~~~la~~~~~~g~--~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~----g~~~~A~~~~~~~l~~~p~~~~~~~~la~ 177 (810)
|.....++.+.+. +..=+...+++++.+|.+..+|...=.+.... ....+=+++..+++..++.|..+|.....
T Consensus 112 W~hR~w~L~~~p~~~~~~EL~lcek~L~~D~RNfh~W~YRRfV~~~~~~~~~~~~~El~ftt~~I~~nfSNYsaWhyRs~ 191 (421)
T KOG0529|consen 112 WHHRKWVLQKNPHSDWNTELQLCEKALKQDPRNFHAWHYRRFVVEQAERSRNLEKEELEFTTKLINDNFSNYSAWHYRSL 191 (421)
T ss_pred HHHHHHHHHhCCCchHHHHHHHHHHHHhcCcccccchHHHHHHHHHHhcccccchhHHHHHHHHHhccchhhhHHHHHHH
Confidence 8888888776653 56777888888888888776655444333322 22456677777888778888777776665
Q ss_pred HHH
Q 003563 178 LFL 180 (810)
Q Consensus 178 ~~~ 180 (810)
++-
T Consensus 192 lL~ 194 (421)
T KOG0529|consen 192 LLS 194 (421)
T ss_pred HHH
Confidence 554
No 366
>PF07720 TPR_3: Tetratricopeptide repeat; InterPro: IPR011716 This entry includes tetratricopeptide-like repeats found in the LcrH/SycD-like chaperones [].; PDB: 3KS2_O 3GZ2_A 3GZ1_A 3GYZ_A 4AM9_A 2VGX_A 2VGY_A.
Probab=88.38 E-value=1.5 Score=27.85 Aligned_cols=18 Identities=22% Similarity=0.289 Sum_probs=6.6
Q ss_pred HHHHHHHHcCChHHHHHH
Q 003563 72 TLGLAHSALGNHKSAFDF 89 (810)
Q Consensus 72 ~l~~~~~~~g~~~~A~~~ 89 (810)
.+|..+..+|++++|+..
T Consensus 6 ~~a~~~y~~~ky~~A~~~ 23 (36)
T PF07720_consen 6 GLAYNFYQKGKYDEAIHF 23 (36)
T ss_dssp HHHHHHHHTT-HHHHHHH
T ss_pred HHHHHHHHHhhHHHHHHH
Confidence 333333333333333333
No 367
>PF07720 TPR_3: Tetratricopeptide repeat; InterPro: IPR011716 This entry includes tetratricopeptide-like repeats found in the LcrH/SycD-like chaperones [].; PDB: 3KS2_O 3GZ2_A 3GZ1_A 3GYZ_A 4AM9_A 2VGX_A 2VGY_A.
Probab=88.28 E-value=1.8 Score=27.48 Aligned_cols=31 Identities=16% Similarity=0.097 Sum_probs=15.9
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHH--HHHHcCC
Q 003563 102 ALWKQLLTFAVQKGDTAQAMYYIR--QAIRAEP 132 (810)
Q Consensus 102 ~~~~~la~~~~~~g~~~~A~~~~~--~al~~~p 132 (810)
+.|+.+|..+..+|++++|+..|+ -+..++|
T Consensus 2 e~~y~~a~~~y~~~ky~~A~~~~~y~~l~~ld~ 34 (36)
T PF07720_consen 2 EYLYGLAYNFYQKGKYDEAIHFFQYAFLCALDK 34 (36)
T ss_dssp HHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHTT
T ss_pred cHHHHHHHHHHHHhhHHHHHHHHHHHHHHHhcc
Confidence 345555666666666666666622 4444444
No 368
>PF04190 DUF410: Protein of unknown function (DUF410) ; InterPro: IPR007317 This is a family of conserved eukaryotic proteins with undetermined function.; PDB: 3LKU_E 2WPV_G.
Probab=88.24 E-value=29 Score=34.44 Aligned_cols=31 Identities=10% Similarity=-0.038 Sum_probs=17.0
Q ss_pred HHHHHHHHHHhhcCCCHHHHHHHHHHHHHcC
Q 003563 331 HAIMFFYKALDRFEDNIDARLTLASLLLEEA 361 (810)
Q Consensus 331 ~A~~~~~~al~~~p~~~~~~~~la~~~~~~g 361 (810)
.-.+.|+..++.+|........+|..|+...
T Consensus 212 ~L~~~Y~~~L~rd~~~~~~L~~IG~~yFgi~ 242 (260)
T PF04190_consen 212 KLCEKYKPSLKRDPSFKEYLDKIGQLYFGIQ 242 (260)
T ss_dssp HHHHHTHH---HHHHTHHHHHHHHHHHH---
T ss_pred HHHHHhCccccccHHHHHHHHHHHHHHCCCC
Confidence 3344455556666777777788888887643
No 369
>PF12862 Apc5: Anaphase-promoting complex subunit 5
Probab=88.24 E-value=3.8 Score=33.08 Aligned_cols=27 Identities=26% Similarity=0.271 Sum_probs=15.3
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHH
Q 003563 208 IDLLVAILMENNAYEKTLQHIEHAQIV 234 (810)
Q Consensus 208 ~~~la~~~~~~g~~~~A~~~~~~~~~~ 234 (810)
...++.++...|++++|+..+++++.+
T Consensus 44 ll~lA~~~~~~G~~~~A~~~l~eAi~~ 70 (94)
T PF12862_consen 44 LLNLAELHRRFGHYEEALQALEEAIRL 70 (94)
T ss_pred HHHHHHHHHHhCCHHHHHHHHHHHHHH
Confidence 344555555556666666665555554
No 370
>COG3629 DnrI DNA-binding transcriptional activator of the SARP family [Signal transduction mechanisms]
Probab=88.05 E-value=9 Score=37.90 Aligned_cols=64 Identities=19% Similarity=0.258 Sum_probs=50.0
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Q 003563 101 SALWKQLLTFAVQKGDTAQAMYYIRQAIRAEPKDISLRIHLASFYVEIGDYEKAAESYEQIQKL 164 (810)
Q Consensus 101 ~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~ 164 (810)
..++..++..+...|+++.++..+++.+..+|.+...+..+...|...|+...|+..|+++-+.
T Consensus 153 ~~~l~~lae~~~~~~~~~~~~~~l~~Li~~dp~~E~~~~~lm~~y~~~g~~~~ai~~y~~l~~~ 216 (280)
T COG3629 153 IKALTKLAEALIACGRADAVIEHLERLIELDPYDEPAYLRLMEAYLVNGRQSAAIRAYRQLKKT 216 (280)
T ss_pred HHHHHHHHHHHHhcccHHHHHHHHHHHHhcCccchHHHHHHHHHHHHcCCchHHHHHHHHHHHH
Confidence 3456677777777888888888888888888888888888888888888888888888777664
No 371
>PF12862 Apc5: Anaphase-promoting complex subunit 5
Probab=87.92 E-value=4.4 Score=32.75 Aligned_cols=56 Identities=11% Similarity=0.069 Sum_probs=29.5
Q ss_pred HHcCCHHHHHHHHHHHHHHhcCCCCCc-----HHHHHHHHHHHHhcCCHHHHHHHHHHhhc
Q 003563 216 MENNAYEKTLQHIEHAQIVRFSGKELP-----LKLKVKAGICYLRLGNMEKAEILFADLQW 271 (810)
Q Consensus 216 ~~~g~~~~A~~~~~~~~~~~~~~~~~~-----~~~~~~la~~~~~~g~~~~A~~~~~~~~~ 271 (810)
...|++.+|++.+.+............ ..+...++.++...|++++|+..+++++.
T Consensus 9 ~~~~dy~~A~d~L~~~fD~~~~~~~~~~~~~~~~all~lA~~~~~~G~~~~A~~~l~eAi~ 69 (94)
T PF12862_consen 9 LRSGDYSEALDALHRYFDYAKQSNNSSSNSGLAYALLNLAELHRRFGHYEEALQALEEAIR 69 (94)
T ss_pred HHcCCHHHHHHHHHHHHHHHhhcccchhhHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHH
Confidence 456677777666666665532222111 23344455555555666666655555543
No 372
>COG3629 DnrI DNA-binding transcriptional activator of the SARP family [Signal transduction mechanisms]
Probab=87.59 E-value=3.2 Score=40.98 Aligned_cols=93 Identities=16% Similarity=0.209 Sum_probs=75.7
Q ss_pred HHHHHHHHHH----cCC--HHHHHHHHHHHHHhCCCChHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCCCHHHHHHHHH
Q 003563 36 MLGEASLQYA----YGN--FEQAISLLKEVVRLSPNLPETYNTLGLAHSALGNHKSAFDFYVIAAHLSPKDSALWKQLLT 109 (810)
Q Consensus 36 ~l~~a~~~~~----~g~--~~~A~~~~~~~l~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~p~~~~~~~~la~ 109 (810)
.+.++--++. .++ |..=+...++.++. ....++..++..+...|+++.+...+++.+..+|.+...|..+-.
T Consensus 118 ~~~~~~~~~~~g~~~~d~~f~~WV~~~R~~l~e--~~~~~l~~lae~~~~~~~~~~~~~~l~~Li~~dp~~E~~~~~lm~ 195 (280)
T COG3629 118 RFEQAGELLSEGPVLGDDRFDEWVLEQRRALEE--LFIKALTKLAEALIACGRADAVIEHLERLIELDPYDEPAYLRLME 195 (280)
T ss_pred HHHHHHHHhhcCCcCCCchHHHHHHHHHHHHHH--HHHHHHHHHHHHHHhcccHHHHHHHHHHHHhcCccchHHHHHHHH
Confidence 3444444444 444 66666666666654 346788999999999999999999999999999999999999999
Q ss_pred HHHHcCCHHHHHHHHHHHHHc
Q 003563 110 FAVQKGDTAQAMYYIRQAIRA 130 (810)
Q Consensus 110 ~~~~~g~~~~A~~~~~~al~~ 130 (810)
.|...|+...|+..|++.-+.
T Consensus 196 ~y~~~g~~~~ai~~y~~l~~~ 216 (280)
T COG3629 196 AYLVNGRQSAAIRAYRQLKKT 216 (280)
T ss_pred HHHHcCCchHHHHHHHHHHHH
Confidence 999999999999999998774
No 373
>PF07721 TPR_4: Tetratricopeptide repeat; InterPro: IPR011717 This entry includes tetratricopeptide-like repeats not detected by the IPR001440 from INTERPRO, IPR013105 from INTERPRO and IPR011716 from INTERPRO models. The tetratricopeptide repeat (TPR) motif is a protein-protein interaction module found in multiple copies in a number of functionally different proteins that facilitates specific interactions with a partner protein(s) [].; GO: 0042802 identical protein binding
Probab=87.31 E-value=0.92 Score=26.25 Aligned_cols=22 Identities=23% Similarity=0.101 Sum_probs=10.3
Q ss_pred HHHHHHHHHHHcCChHHHHHHH
Q 003563 69 TYNTLGLAHSALGNHKSAFDFY 90 (810)
Q Consensus 69 ~~~~l~~~~~~~g~~~~A~~~~ 90 (810)
+.+.+|.++...|++++|...+
T Consensus 3 a~~~la~~~~~~G~~~eA~~~l 24 (26)
T PF07721_consen 3 ARLALARALLAQGDPDEAERLL 24 (26)
T ss_pred HHHHHHHHHHHcCCHHHHHHHH
Confidence 3444444444445544444443
No 374
>COG2912 Uncharacterized conserved protein [Function unknown]
Probab=86.59 E-value=4.6 Score=39.31 Aligned_cols=74 Identities=16% Similarity=0.005 Sum_probs=63.9
Q ss_pred HHHHHHHHHHcCChHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHHHHHHHHH
Q 003563 70 YNTLGLAHSALGNHKSAFDFYVIAAHLSPKDSALWKQLLTFAVQKGDTAQAMYYIRQAIRAEPKDISLRIHLAS 143 (810)
Q Consensus 70 ~~~l~~~~~~~g~~~~A~~~~~~a~~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~ 143 (810)
...+=..+...++++.|....++.+.++|.++.-+.-.|.+|.+.|.+.-|+..++..++..|+++.+-...+.
T Consensus 184 l~~lk~~~~~e~~~~~al~~~~r~l~l~P~dp~eirDrGliY~ql~c~~vAl~dl~~~~~~~P~~~~a~~ir~~ 257 (269)
T COG2912 184 LRNLKAALLRELQWELALRVAERLLDLNPEDPYEIRDRGLIYAQLGCYHVALEDLSYFVEHCPDDPIAEMIRAQ 257 (269)
T ss_pred HHHHHHHHHHhhchHHHHHHHHHHHhhCCCChhhccCcHHHHHhcCCchhhHHHHHHHHHhCCCchHHHHHHHH
Confidence 34455667788999999999999999999999999999999999999999999999999999998877554443
No 375
>COG4941 Predicted RNA polymerase sigma factor containing a TPR repeat domain [Transcription]
Probab=85.06 E-value=37 Score=34.08 Aligned_cols=190 Identities=12% Similarity=0.078 Sum_probs=120.6
Q ss_pred HHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHhhCCCCCChHHHHHHHHHHHHcCCHHHHHHHHHH
Q 003563 151 YEKAAESYEQIQKLFPDNVDATKTGAQLFLKCGQTARSIGILEEYLKVHPSDADLSVIDLLVAILMENNAYEKTLQHIEH 230 (810)
Q Consensus 151 ~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~~~la~~~~~~g~~~~A~~~~~~ 230 (810)
-++|+..-.-+..+.|..++++-.++.+.+...+.. -..+++. ....+..--......+-.+++...+.+
T Consensus 212 c~EairLgRll~~L~p~EPE~~GL~ALmll~~sR~~---------AR~~~~G-~~vlL~dQDr~lW~r~lI~eg~all~r 281 (415)
T COG4941 212 CDEAIRLGRLLARLLPGEPEALGLLALMLLQESRRP---------ARFDADG-EPVLLEDQDRSLWDRALIDEGLALLDR 281 (415)
T ss_pred HHHHHHHHHHHHHHcCCChHHHHHHHHHHHHHhhhh---------hccCCCC-CeeeccccchhhhhHHHHHHHHHHHHH
Confidence 467888888888888988888877776665432211 1112111 100011111122333445778888888
Q ss_pred HHHHhcCCCCCcHHHHHHHHHHHHh-----cCCHHHHHHHHHHhhccCCchhHhHHHHHHHHHHHcCCcHHHHHHHHHHH
Q 003563 231 AQIVRFSGKELPLKLKVKAGICYLR-----LGNMEKAEILFADLQWKNAIDHADLITEVADTLMSLGHSNSALKYYHFLE 305 (810)
Q Consensus 231 ~~~~~~~~~~~~~~~~~~la~~~~~-----~g~~~~A~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~ 305 (810)
+... . .+.+..+...++-++.. .-+|..-..+|+-+....| ++.+-.+.+.+..+..-...++...+.+.
T Consensus 282 A~~~-~--~pGPYqlqAAIaa~HA~a~~aedtDW~~I~aLYdaL~~~ap--SPvV~LNRAVAla~~~Gp~agLa~ve~L~ 356 (415)
T COG4941 282 ALAS-R--RPGPYQLQAAIAALHARARRAEDTDWPAIDALYDALEQAAP--SPVVTLNRAVALAMREGPAAGLAMVEALL 356 (415)
T ss_pred HHHc-C--CCChHHHHHHHHHHHHhhcccCCCChHHHHHHHHHHHHhCC--CCeEeehHHHHHHHhhhHHhHHHHHHHhh
Confidence 8765 2 24444555555555543 2356667777777665555 55666667777777777888888887776
Q ss_pred hcc-CCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHhhcCCCHHHHHHHHH
Q 003563 306 TNA-GTDNGYLYLKLAECYLSLKERAHAIMFFYKALDRFEDNIDARLTLAS 355 (810)
Q Consensus 306 ~~~-~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~ 355 (810)
... -......+...|..+.++|+.++|...|++++.+.++..+..+....
T Consensus 357 ~~~~L~gy~~~h~~RadlL~rLgr~~eAr~aydrAi~La~~~aer~~l~~r 407 (415)
T COG4941 357 ARPRLDGYHLYHAARADLLARLGRVEEARAAYDRAIALARNAAERAFLRQR 407 (415)
T ss_pred cccccccccccHHHHHHHHHHhCChHHHHHHHHHHHHhcCChHHHHHHHHH
Confidence 541 13345567778999999999999999999999999988776655443
No 376
>PF13041 PPR_2: PPR repeat family
Probab=85.05 E-value=3.6 Score=28.38 Aligned_cols=44 Identities=16% Similarity=0.203 Sum_probs=25.1
Q ss_pred HhHHHHHHHHHHHcCCcHHHHHHHHHHHhccCCCCHHHHHHHHH
Q 003563 278 ADLITEVADTLMSLGHSNSALKYYHFLETNAGTDNGYLYLKLAE 321 (810)
Q Consensus 278 ~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~la~ 321 (810)
...|..+-..+.+.|++++|.++|+++.+..-+.+...+..+-.
T Consensus 3 ~~~yn~li~~~~~~~~~~~a~~l~~~M~~~g~~P~~~Ty~~li~ 46 (50)
T PF13041_consen 3 VVTYNTLISGYCKAGKFEEALKLFKEMKKRGIKPDSYTYNILIN 46 (50)
T ss_pred hHHHHHHHHHHHHCcCHHHHHHHHHHHHHcCCCCCHHHHHHHHH
Confidence 34455566666666666666666666665544455555544433
No 377
>PF09670 Cas_Cas02710: CRISPR-associated protein (Cas_Cas02710)
Probab=84.90 E-value=18 Score=38.26 Aligned_cols=62 Identities=19% Similarity=0.217 Sum_probs=46.9
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChH--HHHHHHH--HHHHcCChHHHHHHHHHHHhc
Q 003563 35 KMLGEASLQYAYGNFEQAISLLKEVVRLSPNLPE--TYNTLGL--AHSALGNHKSAFDFYVIAAHL 96 (810)
Q Consensus 35 ~~l~~a~~~~~~g~~~~A~~~~~~~l~~~p~~~~--~~~~l~~--~~~~~g~~~~A~~~~~~a~~~ 96 (810)
..+.++..++..++|..|...+..+...-|.... .+..+.. -+...-++.+|.+.++.....
T Consensus 133 ~~~~~a~~l~n~~~y~aA~~~l~~l~~rl~~~~~~~~~~~l~~~y~~WD~fd~~~A~~~l~~~~~~ 198 (379)
T PF09670_consen 133 REWRRAKELFNRYDYGAAARILEELLRRLPGREEYQRYKDLCEGYDAWDRFDHKEALEYLEKLLKR 198 (379)
T ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHHhCCchhhHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHH
Confidence 4567899999999999999999999886344333 4444444 445688899999999987764
No 378
>PF10579 Rapsyn_N: Rapsyn N-terminal myristoylation and linker region; InterPro: IPR019568 Neuromuscular junction formation relies upon the clustering of acetylcholine receptors and other proteins in the muscle membrane. Rapsyn is a peripheral membrane protein that is selectively concentrated at the neuromuscular junction and is essential for the formation of synaptic acetylcholine receptor aggregates. Acetylcholine receptors fail to aggregate beneath nerve terminals in mice where rapsyn has been knocked out. The N-terminal six amino acids of rapsyn are its myristoylation site, and myristoylation is necessary for the targeting of the protein to the membrane []. ; GO: 0008270 zinc ion binding, 0033130 acetylcholine receptor binding, 0007268 synaptic transmission, 0005856 cytoskeleton, 0030054 cell junction, 0045211 postsynaptic membrane
Probab=84.28 E-value=9 Score=29.28 Aligned_cols=53 Identities=13% Similarity=0.151 Sum_probs=26.8
Q ss_pred HHHHHHcCChHHHHHHHHHHHhcCCCCHHHHHHH---HHHHHHcCCHHHHHHHHHH
Q 003563 74 GLAHSALGNHKSAFDFYVIAAHLSPKDSALWKQL---LTFAVQKGDTAQAMYYIRQ 126 (810)
Q Consensus 74 ~~~~~~~g~~~~A~~~~~~a~~~~p~~~~~~~~l---a~~~~~~g~~~~A~~~~~~ 126 (810)
|.-++...+.++|+..+.++++..++.++.+..+ ..++...|++.+++.+..+
T Consensus 13 GlkLY~~~~~~~Al~~W~~aL~k~~~~~~rf~~lG~l~qA~~e~Gkyr~~L~fA~~ 68 (80)
T PF10579_consen 13 GLKLYHQNETQQALQKWRKALEKITDREDRFRVLGYLIQAHMEWGKYREMLAFALQ 68 (80)
T ss_pred HHHHhccchHHHHHHHHHHHHhhcCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3344455555566666666665555544444333 2344455555555554433
No 379
>PF15015 NYD-SP12_N: Spermatogenesis-associated, N-terminal
Probab=84.14 E-value=12 Score=38.44 Aligned_cols=86 Identities=12% Similarity=0.113 Sum_probs=62.9
Q ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHH---hhCCCCCChHHHHHHHHHH
Q 003563 139 IHLASFYVEIGDYEKAAESYEQIQKLFPDNVDATKTGAQLFLKCGQTARSIGILEEYL---KVHPSDADLSVIDLLVAIL 215 (810)
Q Consensus 139 ~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~l---~~~p~~~~~~~~~~la~~~ 215 (810)
-.+..||..+++.+-|+..-.+.+.++|..+.-+...|.++..+.+|.+|...+--+. -+...+.. -...+..+|
T Consensus 232 tklv~CYL~~rkpdlALnh~hrsI~lnP~~frnHLrqAavfR~LeRy~eAarSamia~ymywl~g~~~q--~~S~lIkly 309 (569)
T PF15015_consen 232 TKLVTCYLRMRKPDLALNHSHRSINLNPSYFRNHLRQAAVFRRLERYSEAARSAMIADYMYWLSGGSEQ--RISKLIKLY 309 (569)
T ss_pred HHHHHhhhhcCCCchHHHHHhhhhhcCcchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCchH--hHHHHHHHH
Confidence 4688999999999999999999999999999999999999999999999887654443 23332222 233455555
Q ss_pred HHcCCHHHHHHH
Q 003563 216 MENNAYEKTLQH 227 (810)
Q Consensus 216 ~~~g~~~~A~~~ 227 (810)
... ..++|+..
T Consensus 310 Wqa-miEeAiTr 320 (569)
T PF15015_consen 310 WQA-MIEEAITR 320 (569)
T ss_pred HHH-HHHHHHhc
Confidence 533 34555543
No 380
>PF10516 SHNi-TPR: SHNi-TPR; InterPro: IPR019544 The tetratrico peptide repeat region (TPR) is a structural motif present in a wide range of proteins [, , ]. It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. The X-ray structure of a domain containing three TPRs from protein phosphatase 5 revealed that TPR adopts a helix-turn-helix arrangement, with adjacent TPR motifs packing in a parallel fashion, resulting in a spiral of repeating anti-parallel alpha-helices []. The two helices are denoted helix A and helix B. The packing angle between helix A and helix B is ~24 degrees within a single TPR and generates a right-handed superhelical shape. Helix A interacts with helix B and with helix A' of the next TPR. Two protein surfaces are generated: the inner concave surface is contributed to mainly by residue on helices A, and the other surface presents residues from both helices A and B. This entry represents SHNi-TPR (Sim3-Hif1-NASP interrupted TPR), a sequence that is an interrupted form of TPR repeat [].
Probab=84.09 E-value=2 Score=27.61 Aligned_cols=28 Identities=25% Similarity=0.293 Sum_probs=15.4
Q ss_pred HHHHHHHHHHHcCChHHHHHHHHHHHhc
Q 003563 69 TYNTLGLAHSALGNHKSAFDFYVIAAHL 96 (810)
Q Consensus 69 ~~~~l~~~~~~~g~~~~A~~~~~~a~~~ 96 (810)
++..||.+-...++|++|+..|++++++
T Consensus 3 v~~~Lgeisle~e~f~qA~~D~~~aL~i 30 (38)
T PF10516_consen 3 VYDLLGEISLENENFEQAIEDYEKALEI 30 (38)
T ss_pred HHHHHHHHHHHhccHHHHHHHHHHHHHH
Confidence 4455555555555555555555555543
No 381
>PF10516 SHNi-TPR: SHNi-TPR; InterPro: IPR019544 The tetratrico peptide repeat region (TPR) is a structural motif present in a wide range of proteins [, , ]. It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. The X-ray structure of a domain containing three TPRs from protein phosphatase 5 revealed that TPR adopts a helix-turn-helix arrangement, with adjacent TPR motifs packing in a parallel fashion, resulting in a spiral of repeating anti-parallel alpha-helices []. The two helices are denoted helix A and helix B. The packing angle between helix A and helix B is ~24 degrees within a single TPR and generates a right-handed superhelical shape. Helix A interacts with helix B and with helix A' of the next TPR. Two protein surfaces are generated: the inner concave surface is contributed to mainly by residue on helices A, and the other surface presents residues from both helices A and B. This entry represents SHNi-TPR (Sim3-Hif1-NASP interrupted TPR), a sequence that is an interrupted form of TPR repeat [].
Probab=83.51 E-value=2.3 Score=27.38 Aligned_cols=29 Identities=31% Similarity=0.224 Sum_probs=22.7
Q ss_pred HHHHHHHHHHHHccCHHHHHHHHHHHHhh
Q 003563 314 YLYLKLAECYLSLKERAHAIMFFYKALDR 342 (810)
Q Consensus 314 ~~~~~la~~~~~~g~~~~A~~~~~~al~~ 342 (810)
.++..+|.+-...++|++|+..|++++++
T Consensus 2 dv~~~Lgeisle~e~f~qA~~D~~~aL~i 30 (38)
T PF10516_consen 2 DVYDLLGEISLENENFEQAIEDYEKALEI 30 (38)
T ss_pred cHHHHHHHHHHHhccHHHHHHHHHHHHHH
Confidence 35677888888888888888888888765
No 382
>PF14863 Alkyl_sulf_dimr: Alkyl sulfatase dimerisation; PDB: 2YHE_C 2CG2_A 2CG3_A 2CFU_A 2CFZ_A.
Probab=83.38 E-value=3.7 Score=35.89 Aligned_cols=49 Identities=29% Similarity=0.320 Sum_probs=37.6
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHcCC
Q 003563 34 TKMLGEASLQYAYGNFEQAISLLKEVVRLSPNLPETYNTLGLAHSALGN 82 (810)
Q Consensus 34 ~~~l~~a~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~l~~~~~~~g~ 82 (810)
...+..|...+..|++.-|..+++.++..+|++.++...++.++.++|.
T Consensus 71 d~vl~~A~~~~~~gd~~wA~~L~d~l~~adp~n~~ar~l~A~al~~lg~ 119 (141)
T PF14863_consen 71 DKVLERAQAALAAGDYQWAAELLDHLVFADPDNEEARQLKADALEQLGY 119 (141)
T ss_dssp HHHHHHHHHHHHCT-HHHHHHHHHHHHHH-TT-HHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHHHH
Confidence 3456778888889999999999999999999988888888888876654
No 383
>KOG4014 consensus Uncharacterized conserved protein (contains TPR repeat) [Function unknown]
Probab=82.88 E-value=37 Score=30.84 Aligned_cols=170 Identities=14% Similarity=0.115 Sum_probs=105.4
Q ss_pred cCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHH-----cCChHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHc-----C
Q 003563 46 YGNFEQAISLLKEVVRLSPNLPETYNTLGLAHSA-----LGNHKSAFDFYVIAAHLSPKDSALWKQLLTFAVQK-----G 115 (810)
Q Consensus 46 ~g~~~~A~~~~~~~l~~~p~~~~~~~~l~~~~~~-----~g~~~~A~~~~~~a~~~~p~~~~~~~~la~~~~~~-----g 115 (810)
+.+|++|..+|..--..+ ..+...+.+|..++. .+++..|++.+..+-. .+++.+...+|.++..- +
T Consensus 48 ~knF~~A~kv~K~nCden-~y~kSCyKyG~y~~~GKgG~~~~l~~a~r~~~~aC~--~n~~~aC~~~gLl~~~g~~~r~~ 124 (248)
T KOG4014|consen 48 QKNFQAAVKVFKKNCDEN-SYPKSCYKYGMYMLAGKGGDDASLSKAIRPMKIACD--ANIPQACRYLGLLHWNGEKDRKA 124 (248)
T ss_pred HHHHHHHHHHHHhccccc-CCcHHHHHhhhhhhcccCCCccCHHHHHHHHHHHhc--cCCHHHHhhhhhhhccCcCCccC
Confidence 456777777776543322 356677777776653 4578889999988876 45677777777777643 2
Q ss_pred --CHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCChHHHHHHHH
Q 003563 116 --DTAQAMYYIRQAIRAEPKDISLRIHLASFYVEIGDYEKAAESYEQIQKLFPDNVDATKTGAQLFLKCGQTARSIGILE 193 (810)
Q Consensus 116 --~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~ 193 (810)
+.++|.+++.++-.+ ++..+.+.|...|..-.+ + +....|....- ...+..+.-..+.+.|.++--
T Consensus 125 dpd~~Ka~~y~traCdl--~~~~aCf~LS~m~~~g~~--k-------~~t~ap~~g~p-~~~~~~~~~~kDMdka~qfa~ 192 (248)
T KOG4014|consen 125 DPDSEKAERYMTRACDL--EDGEACFLLSTMYMGGKE--K-------FKTNAPGEGKP-LDRAELGSLSKDMDKALQFAI 192 (248)
T ss_pred CCCcHHHHHHHHHhccC--CCchHHHHHHHHHhccch--h-------hcccCCCCCCC-cchhhhhhhhHhHHHHHHHHH
Confidence 367888898888765 456666777666654321 1 11123311100 122344455678888888888
Q ss_pred HHHhhCCCCCChHHHHHHHHHHHH----cCCHHHHHHHHHHHHHH
Q 003563 194 EYLKVHPSDADLSVIDLLVAILME----NNAYEKTLQHIEHAQIV 234 (810)
Q Consensus 194 ~~l~~~p~~~~~~~~~~la~~~~~----~g~~~~A~~~~~~~~~~ 234 (810)
++.++... .+.-++.++|.. -.+-++|..+-.++.++
T Consensus 193 kACel~~~----~aCAN~SrMyklGDGv~Kde~~Aekyk~rA~e~ 233 (248)
T KOG4014|consen 193 KACELDIP----QACANVSRMYKLGDGVPKDEDQAEKYKDRAKEI 233 (248)
T ss_pred HHHhcCCh----HHHhhHHHHHHccCCCCccHHHHHHHHHHHHHH
Confidence 88776532 144466666653 24677788877777765
No 384
>KOG2581 consensus 26S proteasome regulatory complex, subunit RPN3/PSMD3 [Posttranslational modification, protein turnover, chaperones]
Probab=81.15 E-value=16 Score=37.57 Aligned_cols=113 Identities=14% Similarity=0.135 Sum_probs=73.1
Q ss_pred HHHHHHHHHHhhhcHHHHHHHHHHHHhhhhccCChhHHHHHHHhhhhhhccccCCchhHHHHHHHHHhCCCC--hhHhHH
Q 003563 534 LIIDLCKALASLQRYEEASEIINLSMRLAYNILPLEKKEELRSLGAKMAYDSTDPNHGFDCAKYILQLHPYS--LSAWNC 611 (810)
Q Consensus 534 ~~~~~~~~~~~~~~~~eA~~~~~~al~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~a~~~~r~~~~~~p~~--~~~~~~ 611 (810)
+++-++.++...|+..+-...+...++........+....|..+.+.+.++.+-++.|-..+.+.. +|.+ ..-|.-
T Consensus 171 ~~fy~~l~~E~~~~l~~~rs~l~~~lrtAtLrhd~e~qavLiN~LLr~yL~n~lydqa~~lvsK~~--~pe~~snne~AR 248 (493)
T KOG2581|consen 171 LYFYLYLSYELEGRLADIRSFLHALLRTATLRHDEEGQAVLINLLLRNYLHNKLYDQADKLVSKSV--YPEAASNNEWAR 248 (493)
T ss_pred HHHHHHHHHHhhcchHHHHHHHHHHHHHhhhcCcchhHHHHHHHHHHHHhhhHHHHHHHHHhhccc--CccccccHHHHH
Confidence 566677788888887777666666655444444556667777777777777666666655544332 3322 112222
Q ss_pred HHHHHHhhcccccccchhhHHHHHHHHhcCCCCCchhhhcchhhhccchHHHHHHHHHHHhhCCCChHHHH
Q 003563 612 YYKVLSRMGKINSKHSKHSKFIRYLRAKYKDCVPPIIISGHQFTMASHHQDAARCYLEAYKLLPENPLINL 682 (810)
Q Consensus 612 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~g~~~~~~~~~~~Ai~~y~~a~~~~p~~p~~~l 682 (810)
| ++-.|.|......|..|..++..|++..|++..+.+
T Consensus 249 Y----------------------------------~yY~GrIkaiqldYssA~~~~~qa~rkapq~~alGf 285 (493)
T KOG2581|consen 249 Y----------------------------------LYYLGRIKAIQLDYSSALEYFLQALRKAPQHAALGF 285 (493)
T ss_pred H----------------------------------HHHHhhHHHhhcchhHHHHHHHHHHHhCcchhhhhH
Confidence 2 123377778888999999999999999998765444
No 385
>PF11817 Foie-gras_1: Foie gras liver health family 1; InterPro: IPR021773 Mutating the gene foie gras in zebrafish has been shown to affect development; the mutants develop large, lipid-filled hepatocytes in the liver, resembling those in individuals with fatty liver disease []. Foie-gras protein is long and has several well-defined domains though none of them has a known function. We have annotated this one as the first []. THe C terminus of this region contains TPR repeats.
Probab=81.04 E-value=50 Score=32.47 Aligned_cols=58 Identities=19% Similarity=0.129 Sum_probs=26.3
Q ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHHhcCCC--CCcHHHHHHHHHHHHhcCCHHHHHHHH
Q 003563 209 DLLVAILMENNAYEKTLQHIEHAQIVRFSGK--ELPLKLKVKAGICYLRLGNMEKAEILF 266 (810)
Q Consensus 209 ~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~--~~~~~~~~~la~~~~~~g~~~~A~~~~ 266 (810)
..+|..|+..|++++|.++|+.+...+.... .....+...+..|+...|+.+..+.+.
T Consensus 182 ~~~A~ey~~~g~~~~A~~~l~~~~~~yr~egW~~l~~~~l~~l~~Ca~~~~~~~~~l~~~ 241 (247)
T PF11817_consen 182 LEMAEEYFRLGDYDKALKLLEPAASSYRREGWWSLLTEVLWRLLECAKRLGDVEDYLTTS 241 (247)
T ss_pred HHHHHHHHHCCCHHHHHHHHHHHHHHHHhCCcHHHHHHHHHHHHHHHHHhCCHHHHHHHH
Confidence 3455555555555555555555544322111 111233344444445555544444433
No 386
>PF00244 14-3-3: 14-3-3 protein; InterPro: IPR023410 The 14-3-3 proteins are a large family of approximately 30kDa acidic proteins which exist primarily as homo- and heterodimeric within all eukaryotic cells [, ]. There is a high degree of sequence identity and conservation between all the 14-3-3 isotypes, particularly in the regions which form the dimer interface or line the central ligand binding channel of the dimeric molecule. Each 14-3-3 protein sequence can be roughly divided into three sections: a divergent amino terminus, the conserved core region and a divergent carboxyl terminus. The conserved middle core region of the 14-3-3s encodes an amphipathic groove that forms the main functional domain, a cradle for interacting with client proteins. The monomer consists of nine helices organised in an antiparallel manner, forming an L-shaped structure. The interior of the L-structure is composed of four helices: H3 and H5, which contain many charged and polar amino acids, and H7 and H9, which contain hydrophobic amino acids. These four helices form the concave amphipathic groove that interacts with target peptides. 14-3-3 proteins mainly bind proteins containing phosphothreonine or phosphoserine motifs however exceptions to this rule do exist. Extensive investigation of the 14-3-3 binding site of the mammalian serine/threonine kinase Raf-1 has produced a consensus sequence for 14-3-3-binding, RSxpSxP (in the single-letter amino-acid code, where x denotes any amino acid and p indicates that the next residue is phosphorylated). 14-3-3 proteins appear to effect intracellular signalling in one of three ways - by direct regulation of the catalytic activity of the bound protein, by regulating interactions between the bound protein and other molecules in the cell by sequestration or modification or by controlling the subcellular localisation of the bound ligand. Proteins appear to initially bind to a single dominant site and then subsequently to many, much weaker secondary interaction sites. The 14-3-3 dimer is capable of changing the conformation of its bound ligand whilst itself undergoing minimal structural alteration. This entry represents the structural domain found in 14-3-3 proteins.; PDB: 2O8P_A 3AXY_D 2C74_A 2C63_A 4DX0_A 1YWT_A 3P1O_A 3P1N_A 4DAU_A 3U9X_A ....
Probab=80.94 E-value=55 Score=31.87 Aligned_cols=29 Identities=24% Similarity=0.391 Sum_probs=15.2
Q ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHhCCC
Q 003563 139 IHLASFYVEIGDYEKAAESYEQIQKLFPD 167 (810)
Q Consensus 139 ~~la~~~~~~g~~~~A~~~~~~~l~~~p~ 167 (810)
..+|.+..+.|++++++.++++++..+|+
T Consensus 5 i~~Aklaeq~eRy~dmv~~mk~~~~~~~e 33 (236)
T PF00244_consen 5 IYLAKLAEQAERYDDMVEYMKQLIEMNPE 33 (236)
T ss_dssp HHHHHHHHHTTHHHHHHHHHHHHHHTSS-
T ss_pred HHHHHHHHHhcCHHHHHHHHHHHHccCCC
Confidence 34555555555555555555555555443
No 387
>KOG0128 consensus RNA-binding protein SART3 (RRM superfamily) [RNA processing and modification]
Probab=80.27 E-value=1.2e+02 Score=34.84 Aligned_cols=269 Identities=14% Similarity=0.111 Sum_probs=148.6
Q ss_pred CCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCCCHHHHHHHHHHHH---HcCCHHHHHHH
Q 003563 47 GNFEQAISLLKEVVRLSPNLPETYNTLGLAHSALGNHKSAFDFYVIAAHLSPKDSALWKQLLTFAV---QKGDTAQAMYY 123 (810)
Q Consensus 47 g~~~~A~~~~~~~l~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~p~~~~~~~~la~~~~---~~g~~~~A~~~ 123 (810)
|.-+.=+..+++-+.+++.+...+..|..++...|++++-...-.++.++.|..+..|.....-.. ..++..++...
T Consensus 93 ~~~~~ei~t~~ee~ai~~y~~~~~v~Li~llrk~~dl~kl~~ar~~~~~~~pl~~~lWl~Wl~d~~~mt~s~~~~~v~~~ 172 (881)
T KOG0128|consen 93 GGGNQEIRTLEEELAINSYKYAQMVQLIGLLRKLGDLEKLRQARLEMSEIAPLPPHLWLEWLKDELSMTQSEERKEVEEL 172 (881)
T ss_pred ccchhHHHHHHHHhcccccchHHHHHHHHHHHHhcchHHHHHHHHHHHHhcCCChHHHHHHHHHHHhhccCcchhHHHHH
Confidence 334445666666677788888888999999999999999888888888899999998886654332 23777888889
Q ss_pred HHHHHHcCCCCHHHHHHHHHHH-------HHcCCHHHHHHHHHHHHHhCCCC-------HHHHHHHHHHHHHcCChHHHH
Q 003563 124 IRQAIRAEPKDISLRIHLASFY-------VEIGDYEKAAESYEQIQKLFPDN-------VDATKTGAQLFLKCGQTARSI 189 (810)
Q Consensus 124 ~~~al~~~p~~~~~~~~la~~~-------~~~g~~~~A~~~~~~~l~~~p~~-------~~~~~~la~~~~~~g~~~~A~ 189 (810)
|++++. +-..+..|...+... ...++++.-...|.+++..-... ...+...-..|...-..++-+
T Consensus 173 ~ekal~-dy~~v~iw~e~~~y~~~~~~~~~~~~d~k~~R~vf~ral~s~g~~~t~G~~~we~~~E~e~~~l~n~~~~qv~ 251 (881)
T KOG0128|consen 173 FEKALG-DYNSVPIWEEVVNYLVGFGNVAKKSEDYKKERSVFERALRSLGSHITEGAAIWEMYREFEVTYLCNVEQRQVI 251 (881)
T ss_pred HHHHhc-ccccchHHHHHHHHHHhccccccccccchhhhHHHHHHHhhhhhhhcccHHHHHHHHHHHHHHHHhHHHHHHH
Confidence 999886 334444444444433 44566777788888887653222 233334444444444445555
Q ss_pred HHHHHHHhhCCCCCChHH--HHHHH---HHHHHcCCHHHHHHHHHHHHHHhcCCCCCcHHHHHHHHHHHHhcCCHHHHHH
Q 003563 190 GILEEYLKVHPSDADLSV--IDLLV---AILMENNAYEKTLQHIEHAQIVRFSGKELPLKLKVKAGICYLRLGNMEKAEI 264 (810)
Q Consensus 190 ~~~~~~l~~~p~~~~~~~--~~~la---~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~ 264 (810)
.++...+... -+.+... +.... .......+++.|...+.+. +.
T Consensus 252 a~~~~el~~~-~D~~~~~~~~~~~sk~h~~~~~~~~~~~a~~~l~~~-------------------------------~~ 299 (881)
T KOG0128|consen 252 ALFVRELKQP-LDEDTRGWDLSEQSKAHVYDVETKKLDDALKNLAKI-------------------------------LF 299 (881)
T ss_pred HHHHHHHhcc-chhhhhHHHHHHHHhcchHHHHhccHHHHHHHHHHH-------------------------------HH
Confidence 5555555433 2221100 00000 0001112222222222211 11
Q ss_pred HHHHhhccCCchhHhHHHHHHHHHHHcCCcHHHHHHHHHHHhccCCCCHHHHHHHHHHHH-HccCHHHHHHHHHHHHhhc
Q 003563 265 LFADLQWKNAIDHADLITEVADTLMSLGHSNSALKYYHFLETNAGTDNGYLYLKLAECYL-SLKERAHAIMFFYKALDRF 343 (810)
Q Consensus 265 ~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~la~~~~-~~g~~~~A~~~~~~al~~~ 343 (810)
.+++.+...+. ....|..+.......|.+..-...++++... .+.+...|...+...- .++-.+.+...+-+++...
T Consensus 300 ~~e~~~q~~~~-~~q~~~~yidfe~~~G~p~ri~l~~eR~~~E-~~~~~~~wi~y~~~~d~eLkv~~~~~~~~~ra~R~c 377 (881)
T KOG0128|consen 300 KFERLVQKEPI-KDQEWMSYIDFEKKSGDPVRIQLIEERAVAE-MVLDRALWIGYGVYLDTELKVPQRGVSVHPRAVRSC 377 (881)
T ss_pred HHHHHhhhhHH-HHHHHHHHHHHHHhcCCchHHHHHHHHHHHh-ccccHHHHhhhhhhcccccccccccccccchhhcCC
Confidence 22222222222 3344555566666666666666666666644 4555666666554432 2333444555556666665
Q ss_pred CCCHHHH
Q 003563 344 EDNIDAR 350 (810)
Q Consensus 344 p~~~~~~ 350 (810)
|-..+.|
T Consensus 378 p~tgdL~ 384 (881)
T KOG0128|consen 378 PWTGDLW 384 (881)
T ss_pred chHHHHH
Confidence 5544443
No 388
>COG3947 Response regulator containing CheY-like receiver and SARP domains [Signal transduction mechanisms]
Probab=79.22 E-value=9.1 Score=37.41 Aligned_cols=61 Identities=18% Similarity=0.116 Sum_probs=49.7
Q ss_pred HHHHHHHHHHHcCChHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Q 003563 69 TYNTLGLAHSALGNHKSAFDFYVIAAHLSPKDSALWKQLLTFAVQKGDTAQAMYYIRQAIR 129 (810)
Q Consensus 69 ~~~~l~~~~~~~g~~~~A~~~~~~a~~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~ 129 (810)
.+...+..|...|.+.+|++..++++.++|-+...+..+-.++...|+--.|...|++.-+
T Consensus 281 llgkva~~yle~g~~neAi~l~qr~ltldpL~e~~nk~lm~~la~~gD~is~~khyerya~ 341 (361)
T COG3947 281 LLGKVARAYLEAGKPNEAIQLHQRALTLDPLSEQDNKGLMASLATLGDEISAIKHYERYAE 341 (361)
T ss_pred HHHHHHHHHHHcCChHHHHHHHHHHhhcChhhhHHHHHHHHHHHHhccchhhhhHHHHHHH
Confidence 3445677788888999999999999999988888888888888888888888877776644
No 389
>smart00386 HAT HAT (Half-A-TPR) repeats. Present in several RNA-binding proteins. Structurally and sequentially thought to be similar to TPRs.
Probab=79.05 E-value=4.8 Score=24.27 Aligned_cols=30 Identities=20% Similarity=0.400 Sum_probs=22.4
Q ss_pred cCHHHHHHHHHHHHhhcCCCHHHHHHHHHH
Q 003563 327 KERAHAIMFFYKALDRFEDNIDARLTLASL 356 (810)
Q Consensus 327 g~~~~A~~~~~~al~~~p~~~~~~~~la~~ 356 (810)
|+.+.|...|++++...|.++..|...+..
T Consensus 1 ~~~~~~r~i~e~~l~~~~~~~~~W~~y~~~ 30 (33)
T smart00386 1 GDIERARKIYERALEKFPKSVELWLKYAEF 30 (33)
T ss_pred CcHHHHHHHHHHHHHHCCCChHHHHHHHHH
Confidence 456778888888888888888877776654
No 390
>KOG0529 consensus Protein geranylgeranyltransferase type II, alpha subunit [Posttranslational modification, protein turnover, chaperones]
Probab=79.05 E-value=26 Score=36.28 Aligned_cols=127 Identities=8% Similarity=0.087 Sum_probs=91.9
Q ss_pred CHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHcCC--hHHHHHHHHHHHhcCCCCHHHHHHHHHHHHH----cCCHHHHH
Q 003563 48 NFEQAISLLKEVVRLSPNLPETYNTLGLAHSALGN--HKSAFDFYVIAAHLSPKDSALWKQLLTFAVQ----KGDTAQAM 121 (810)
Q Consensus 48 ~~~~A~~~~~~~l~~~p~~~~~~~~l~~~~~~~g~--~~~A~~~~~~a~~~~p~~~~~~~~la~~~~~----~g~~~~A~ 121 (810)
-.++-+.....+++.+|+...+|+.+..++.+.+. +..=+...+++++.+|.+..+|...=.+... .....+=+
T Consensus 90 ~ld~eL~~~~~~L~~npksY~aW~hR~w~L~~~p~~~~~~EL~lcek~L~~D~RNfh~W~YRRfV~~~~~~~~~~~~~El 169 (421)
T KOG0529|consen 90 LLDEELKYVESALKVNPKSYGAWHHRKWVLQKNPHSDWNTELQLCEKALKQDPRNFHAWHYRRFVVEQAERSRNLEKEEL 169 (421)
T ss_pred hhHHHHHHHHHHHHhCchhHHHHHHHHHHHHhCCCchHHHHHHHHHHHHhcCcccccchHHHHHHHHHHhcccccchhHH
Confidence 56677888889999999999999999999997764 5788899999999999998887644333322 23466778
Q ss_pred HHHHHHHHcCCCCHHHHHHHHHHHHH------cCC------HHHHHHHHHHHHHhCCCCHHHHHH
Q 003563 122 YYIRQAIRAEPKDISLRIHLASFYVE------IGD------YEKAAESYEQIQKLFPDNVDATKT 174 (810)
Q Consensus 122 ~~~~~al~~~p~~~~~~~~la~~~~~------~g~------~~~A~~~~~~~l~~~p~~~~~~~~ 174 (810)
.+..+++..++.|-.+|.....++.. .|+ ...-++....++-.+|++..+|..
T Consensus 170 ~ftt~~I~~nfSNYsaWhyRs~lL~~l~~~~~~g~~~~~~~l~sEle~v~saiFTdp~DqS~WfY 234 (421)
T KOG0529|consen 170 EFTTKLINDNFSNYSAWHYRSLLLSTLHPKEADGNFMPKELLQSELEMVHSAIFTDPEDQSCWFY 234 (421)
T ss_pred HHHHHHHhccchhhhHHHHHHHHHHHhccccccCccCCHHHHHHHHHHHHHHHhcCccccceeee
Confidence 88999999999999998888776652 221 122333444445556666655544
No 391
>COG5187 RPN7 26S proteasome regulatory complex component, contains PCI domain [Posttranslational modification, protein turnover, chaperones]
Probab=78.69 E-value=66 Score=31.62 Aligned_cols=104 Identities=17% Similarity=0.131 Sum_probs=52.1
Q ss_pred HHHHHHHHHHHHHcCChHHHHHHHHHHHhhCCCCC-ChHH---HHHHHHHHHHcCCHHHHHHHHHHHHHHhcCCCCCcHH
Q 003563 169 VDATKTGAQLFLKCGQTARSIGILEEYLKVHPSDA-DLSV---IDLLVAILMENNAYEKTLQHIEHAQIVRFSGKELPLK 244 (810)
Q Consensus 169 ~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~-~~~~---~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~ 244 (810)
.+++.++|..|.+.++.+.+.+.+.+.++..-... ...+ ...+|.+|....-.++.++.....++. +.+-.....
T Consensus 115 ~ea~~n~aeyY~qi~D~~ng~~~~~~~~~~a~stg~KiDv~l~kiRlg~~y~d~~vV~e~lE~~~~~iEk-GgDWeRrNR 193 (412)
T COG5187 115 SEADRNIAEYYCQIMDIQNGFEWMRRLMRDAMSTGLKIDVFLCKIRLGLIYGDRKVVEESLEVADDIIEK-GGDWERRNR 193 (412)
T ss_pred HHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHhcccchhhHHHHHHHHHhhccHHHHHHHHHHHHHHHHh-CCCHHhhhh
Confidence 35677777777777777777777666655432111 0011 223444444444444444444444444 111111222
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHhhccC
Q 003563 245 LKVKAGICYLRLGNMEKAEILFADLQWKN 273 (810)
Q Consensus 245 ~~~~la~~~~~~g~~~~A~~~~~~~~~~~ 273 (810)
.....|.......++.+|-.++..++...
T Consensus 194 yK~Y~Gi~~m~~RnFkeAa~Ll~d~l~tF 222 (412)
T COG5187 194 YKVYKGIFKMMRRNFKEAAILLSDILPTF 222 (412)
T ss_pred HHHHHHHHHHHHHhhHHHHHHHHHHhccc
Confidence 33344555555566666666666655443
No 392
>smart00299 CLH Clathrin heavy chain repeat homology.
Probab=78.64 E-value=45 Score=29.18 Aligned_cols=118 Identities=13% Similarity=0.096 Sum_probs=68.8
Q ss_pred HHcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCHHHHHHH
Q 003563 44 YAYGNFEQAISLLKEVVRLSPNLPETYNTLGLAHSALGNHKSAFDFYVIAAHLSPKDSALWKQLLTFAVQKGDTAQAMYY 123 (810)
Q Consensus 44 ~~~g~~~~A~~~~~~~l~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~p~~~~~~~~la~~~~~~g~~~~A~~~ 123 (810)
...+.....+.+++.++..++.++..+..+..+|... +..+.+.++.. .++ .--.-..+..+.+.+-++++...
T Consensus 18 ~~~~~~~~l~~yLe~~~~~~~~~~~~~~~li~ly~~~-~~~~ll~~l~~----~~~-~yd~~~~~~~c~~~~l~~~~~~l 91 (140)
T smart00299 18 EKRNLLEELIPYLESALKLNSENPALQTKLIELYAKY-DPQKEIERLDN----KSN-HYDIEKVGKLCEKAKLYEEAVEL 91 (140)
T ss_pred HhCCcHHHHHHHHHHHHccCccchhHHHHHHHHHHHH-CHHHHHHHHHh----ccc-cCCHHHHHHHHHHcCcHHHHHHH
Confidence 3467889999999999988888888888888888765 45566666653 111 11122344555556666666666
Q ss_pred HHHHHHcCCCCHHHHHHHHHHHH-HcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHH
Q 003563 124 IRQAIRAEPKDISLRIHLASFYV-EIGDYEKAAESYEQIQKLFPDNVDATKTGAQLFL 180 (810)
Q Consensus 124 ~~~al~~~p~~~~~~~~la~~~~-~~g~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~ 180 (810)
+.+.- ....+ ..++. ..++++.|++++.+ +.+++.|..++..+.
T Consensus 92 ~~k~~----~~~~A----l~~~l~~~~d~~~a~~~~~~-----~~~~~lw~~~~~~~l 136 (140)
T smart00299 92 YKKDG----NFKDA----IVTLIEHLGNYEKAIEYFVK-----QNNPELWAEVLKALL 136 (140)
T ss_pred HHhhc----CHHHH----HHHHHHcccCHHHHHHHHHh-----CCCHHHHHHHHHHHH
Confidence 65431 11111 11122 22666777766664 345666666665544
No 393
>KOG0276 consensus Vesicle coat complex COPI, beta' subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=78.31 E-value=38 Score=36.88 Aligned_cols=44 Identities=32% Similarity=0.394 Sum_probs=21.4
Q ss_pred HcCChHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHH
Q 003563 79 ALGNHKSAFDFYVIAAHLSPKDSALWKQLLTFAVQKGDTAQAMYYIRQA 127 (810)
Q Consensus 79 ~~g~~~~A~~~~~~a~~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~a 127 (810)
+.|+++.|.+...++ ++..-|..||.+....|++..|.+|+.++
T Consensus 649 ~lgrl~iA~~la~e~-----~s~~Kw~~Lg~~al~~~~l~lA~EC~~~a 692 (794)
T KOG0276|consen 649 KLGRLDIAFDLAVEA-----NSEVKWRQLGDAALSAGELPLASECFLRA 692 (794)
T ss_pred hcCcHHHHHHHHHhh-----cchHHHHHHHHHHhhcccchhHHHHHHhh
Confidence 445555544433322 23444555555555555555555555554
No 394
>PF13041 PPR_2: PPR repeat family
Probab=77.88 E-value=7.8 Score=26.67 Aligned_cols=27 Identities=11% Similarity=0.240 Sum_probs=14.5
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHH
Q 003563 207 VIDLLVAILMENNAYEKTLQHIEHAQI 233 (810)
Q Consensus 207 ~~~~la~~~~~~g~~~~A~~~~~~~~~ 233 (810)
.|+.+...+.+.|++++|.++|++..+
T Consensus 5 ~yn~li~~~~~~~~~~~a~~l~~~M~~ 31 (50)
T PF13041_consen 5 TYNTLISGYCKAGKFEEALKLFKEMKK 31 (50)
T ss_pred HHHHHHHHHHHCcCHHHHHHHHHHHHH
Confidence 445555555555555555555555543
No 395
>TIGR03504 FimV_Cterm FimV C-terminal domain. This protein is found at the extreme C-terminus of FimV from Pseudomonas aeruginosa, and of TspA of Neisseria meningitidis. Disruption of the former blocks twitching motility from type IV pili; Semmler, et al. suggest a role in peptidoglycan layer remodelling required by type IV fimbrial systems.
Probab=77.58 E-value=3.1 Score=27.79 Aligned_cols=27 Identities=26% Similarity=0.276 Sum_probs=25.0
Q ss_pred hhhHHHHHHHhChhhHHHHHHHHHhcc
Q 003563 725 LYNIARACHHVGLVSLAASYYEKVLAI 751 (810)
Q Consensus 725 ~ynlgr~~~~lg~~~~Ai~~Y~~vL~~ 751 (810)
-++++++|-.+|..+.|.+..+.|++.
T Consensus 2 kLdLA~ayie~Gd~e~Ar~lL~evl~~ 28 (44)
T TIGR03504 2 KLDLARAYIEMGDLEGARELLEEVIEE 28 (44)
T ss_pred chHHHHHHHHcCChHHHHHHHHHHHHc
Confidence 479999999999999999999999954
No 396
>PF07219 HemY_N: HemY protein N-terminus; InterPro: IPR010817 This entry represents the N terminus (approximately 150 residues) of bacterial HemY porphyrin biosynthesis proteins. These are membrane protein involved in a late step of protoheme IX synthesis [].
Probab=77.36 E-value=3.2 Score=34.56 Aligned_cols=51 Identities=25% Similarity=0.315 Sum_probs=38.1
Q ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHcCC
Q 003563 32 GVTKMLGEASLQYAYGNFEQAISLLKEVVRLSPNLPETYNTLGLAHSALGN 82 (810)
Q Consensus 32 ~~~~~l~~a~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~l~~~~~~~g~ 82 (810)
.....+.+|...+..||+..|.+.+.++-+..+..+-.+..-+.+...+||
T Consensus 58 ka~~al~~Gl~al~~G~~~~A~k~~~~a~~~~~~~~l~~L~AA~AA~~~gd 108 (108)
T PF07219_consen 58 KAQRALSRGLIALAEGDWQRAEKLLAKAAKLSDNPLLNYLLAARAAQAQGD 108 (108)
T ss_pred HHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCC
Confidence 455678888999999999999999999977655555555555666666664
No 397
>KOG2063 consensus Vacuolar assembly/sorting proteins VPS39/VAM6/VPS3 [Intracellular trafficking, secretion, and vesicular transport]
Probab=77.05 E-value=50 Score=38.51 Aligned_cols=168 Identities=18% Similarity=0.042 Sum_probs=102.9
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHHhcCCCCCcHHHHHHHHHHHHhcCCH--HHHHHHHHHhhccCCchhHhHHH---
Q 003563 208 IDLLVAILMENNAYEKTLQHIEHAQIVRFSGKELPLKLKVKAGICYLRLGNM--EKAEILFADLQWKNAIDHADLIT--- 282 (810)
Q Consensus 208 ~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~--~~A~~~~~~~~~~~~~~~~~~~~--- 282 (810)
+..|+.+|...|+.++|++.+.+........+......+-.....+...+.. +-..++-...+..+|.....++.
T Consensus 507 y~~Li~LY~~kg~h~~AL~ll~~l~d~~~~~d~~~~~~~e~ii~YL~~l~~~~~~Li~~y~~wvl~~~p~~gi~Ift~~~ 586 (877)
T KOG2063|consen 507 YRELIELYATKGMHEKALQLLRDLVDEDSDTDSFQLDGLEKIIEYLKKLGAENLDLILEYADWVLNKNPEAGIQIFTSED 586 (877)
T ss_pred HHHHHHHHHhccchHHHHHHHHHHhccccccccchhhhHHHHHHHHHHhcccchhHHHHHhhhhhccCchhheeeeeccC
Confidence 6689999999999999999999887642112333344444455555566655 55666666666655532222211
Q ss_pred ---------HHHHHHHHcCCcHHHHHHHHHHHhccCCCCHHHHHHHHHHHHHccC--------HHHHHHH--HHHHHhh-
Q 003563 283 ---------EVADTLMSLGHSNSALKYYHFLETNAGTDNGYLYLKLAECYLSLKE--------RAHAIMF--FYKALDR- 342 (810)
Q Consensus 283 ---------~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~--------~~~A~~~--~~~al~~- 342 (810)
....-+......+-++.+++.++.....++...+..++..|...=+ -+++.+. .++....
T Consensus 587 ~~~~~sis~~~Vl~~l~~~~~~l~I~YLE~li~~~~~~~~~lht~ll~ly~e~v~~~~~~~~kg~e~~E~~~rekl~~~l 666 (877)
T KOG2063|consen 587 KQEAESISRDDVLNYLKSKEPKLLIPYLEHLISDNRLTSTLLHTVLLKLYLEKVLEQASTDGKGEEAPETTVREKLLDFL 666 (877)
T ss_pred hhhhccCCHHHHHHHhhhhCcchhHHHHHHHhHhccccchHHHHHHHHHHHHHHhhccCchhccccchhhhHHHHHHHHh
Confidence 2233346777888899999998876555566666666666654321 2233333 2222211
Q ss_pred ------cCC-------CHHHHHHHHHHHHHcCCHHHHHHhcCCCCC
Q 003563 343 ------FED-------NIDARLTLASLLLEEAKEEEAITLLSPPKD 375 (810)
Q Consensus 343 ------~p~-------~~~~~~~la~~~~~~g~~~~A~~~~~~a~~ 375 (810)
+|+ ....+...+.++.++|+.++|+..+-..+.
T Consensus 667 ~~s~~Y~p~~~L~~~~~~~l~ee~aill~rl~khe~aL~Iyv~~L~ 712 (877)
T KOG2063|consen 667 ESSDLYDPQLLLERLNGDELYEERAILLGRLGKHEEALHIYVHELD 712 (877)
T ss_pred hhhcccCcchhhhhccchhHHHHHHHHHhhhhhHHHHHHHHHHHhc
Confidence 221 145666788888899999999998865544
No 398
>COG4455 ImpE Protein of avirulence locus involved in temperature-dependent protein secretion [General function prediction only]
Probab=76.26 E-value=32 Score=32.34 Aligned_cols=61 Identities=25% Similarity=0.271 Sum_probs=55.9
Q ss_pred HHHHHcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCCCH
Q 003563 41 SLQYAYGNFEQAISLLKEVVRLSPNLPETYNTLGLAHSALGNHKSAFDFYVIAAHLSPKDS 101 (810)
Q Consensus 41 ~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~p~~~ 101 (810)
..++..+..++|+...+.-++..|.+......+-..+.-.|++++|...++-+..+.|++.
T Consensus 9 seLL~~~sL~dai~~a~~qVkakPtda~~RhflfqLlcvaGdw~kAl~Ql~l~a~l~p~~t 69 (273)
T COG4455 9 SELLDDNSLQDAIGLARDQVKAKPTDAGGRHFLFQLLCVAGDWEKALAQLNLAATLSPQDT 69 (273)
T ss_pred HHHHHhccHHHHHHHHHHHHhcCCccccchhHHHHHHhhcchHHHHHHHHHHHhhcCcccc
Confidence 3467788999999999999999999999999999999999999999999999999998764
No 399
>TIGR03504 FimV_Cterm FimV C-terminal domain. This protein is found at the extreme C-terminus of FimV from Pseudomonas aeruginosa, and of TspA of Neisseria meningitidis. Disruption of the former blocks twitching motility from type IV pili; Semmler, et al. suggest a role in peptidoglycan layer remodelling required by type IV fimbrial systems.
Probab=75.74 E-value=3.7 Score=27.43 Aligned_cols=23 Identities=43% Similarity=0.651 Sum_probs=10.4
Q ss_pred HHHHHHHHcCCHHHHHHHHHHHH
Q 003563 140 HLASFYVEIGDYEKAAESYEQIQ 162 (810)
Q Consensus 140 ~la~~~~~~g~~~~A~~~~~~~l 162 (810)
.+|..|..+|+.+.|.+.++.++
T Consensus 4 dLA~ayie~Gd~e~Ar~lL~evl 26 (44)
T TIGR03504 4 DLARAYIEMGDLEGARELLEEVI 26 (44)
T ss_pred HHHHHHHHcCChHHHHHHHHHHH
Confidence 34444444444444444444444
No 400
>smart00386 HAT HAT (Half-A-TPR) repeats. Present in several RNA-binding proteins. Structurally and sequentially thought to be similar to TPRs.
Probab=75.65 E-value=7.7 Score=23.32 Aligned_cols=27 Identities=33% Similarity=0.432 Sum_probs=13.3
Q ss_pred CHHHHHHHHHHHHHhCCCCHHHHHHHH
Q 003563 150 DYEKAAESYEQIQKLFPDNVDATKTGA 176 (810)
Q Consensus 150 ~~~~A~~~~~~~l~~~p~~~~~~~~la 176 (810)
+.+.|...|++++...|.++..|...+
T Consensus 2 ~~~~~r~i~e~~l~~~~~~~~~W~~y~ 28 (33)
T smart00386 2 DIERARKIYERALEKFPKSVELWLKYA 28 (33)
T ss_pred cHHHHHHHHHHHHHHCCCChHHHHHHH
Confidence 344455555555555555555444443
No 401
>PF10373 EST1_DNA_bind: Est1 DNA/RNA binding domain; InterPro: IPR018834 Est1 is a protein which recruits or activates telomerase at the site of polymerisation [, ]. This is the DNA/RNA binding domain of EST1 []. ; PDB: 1YA0_B.
Probab=75.49 E-value=8.7 Score=38.64 Aligned_cols=62 Identities=27% Similarity=0.159 Sum_probs=28.2
Q ss_pred HHHHHHHHHHcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHH
Q 003563 120 AMYYIRQAIRAEPKDISLRIHLASFYVEIGDYEKAAESYEQIQKLFPDNVDATKTGAQLFLK 181 (810)
Q Consensus 120 A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~ 181 (810)
|..+|.+|..+.|++...+..+|.++...|+.-.|+-+|-+++-.....+.+..++..++.+
T Consensus 1 A~~~Y~~A~~l~P~~G~p~nQLAvl~~~~~~~l~avy~y~Rsl~~~~Pf~~A~~NL~~lf~~ 62 (278)
T PF10373_consen 1 AERYYRKAIRLLPSNGNPYNQLAVLASYQGDDLDAVYYYIRSLAVRIPFPSARENLQKLFEK 62 (278)
T ss_dssp HHHHHHHHHHH-TTBSHHHHHHHHHHHHTT-HHHHHHHHHHHHSSSB--HHHHHHHHHHHHH
T ss_pred CHHHHHHHHHhCCCCCCcccchhhhhccccchHHHHHHHHHHHhcCCCcHHHHHHHHHHHHH
Confidence 34455555555555555555555555555555555555555443332334444444444444
No 402
>PF12739 TRAPPC-Trs85: ER-Golgi trafficking TRAPP I complex 85 kDa subunit; InterPro: IPR024420 This entry represents Trs85, a subunit of the TRAPP III complex []. Trs85 is a multimeric guanine nucleotide-exchange factor for Ypt1, required for membrane expansion during autophagy and the CVT pathway. It directs Ypt1 to the phagophore assembly site [, , , ].
Probab=74.77 E-value=97 Score=33.28 Aligned_cols=28 Identities=18% Similarity=0.045 Sum_probs=23.1
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHcC
Q 003563 104 WKQLLTFAVQKGDTAQAMYYIRQAIRAE 131 (810)
Q Consensus 104 ~~~la~~~~~~g~~~~A~~~~~~al~~~ 131 (810)
...+|+.++..|+|+-|...|+.+.+-.
T Consensus 211 ~R~LAD~aFml~Dy~~A~s~Y~~~k~Df 238 (414)
T PF12739_consen 211 MRRLADLAFMLRDYELAYSTYRLLKKDF 238 (414)
T ss_pred HHHHHHHHHHHccHHHHHHHHHHHHHHH
Confidence 4578999999999999999998887743
No 403
>PF00244 14-3-3: 14-3-3 protein; InterPro: IPR023410 The 14-3-3 proteins are a large family of approximately 30kDa acidic proteins which exist primarily as homo- and heterodimeric within all eukaryotic cells [, ]. There is a high degree of sequence identity and conservation between all the 14-3-3 isotypes, particularly in the regions which form the dimer interface or line the central ligand binding channel of the dimeric molecule. Each 14-3-3 protein sequence can be roughly divided into three sections: a divergent amino terminus, the conserved core region and a divergent carboxyl terminus. The conserved middle core region of the 14-3-3s encodes an amphipathic groove that forms the main functional domain, a cradle for interacting with client proteins. The monomer consists of nine helices organised in an antiparallel manner, forming an L-shaped structure. The interior of the L-structure is composed of four helices: H3 and H5, which contain many charged and polar amino acids, and H7 and H9, which contain hydrophobic amino acids. These four helices form the concave amphipathic groove that interacts with target peptides. 14-3-3 proteins mainly bind proteins containing phosphothreonine or phosphoserine motifs however exceptions to this rule do exist. Extensive investigation of the 14-3-3 binding site of the mammalian serine/threonine kinase Raf-1 has produced a consensus sequence for 14-3-3-binding, RSxpSxP (in the single-letter amino-acid code, where x denotes any amino acid and p indicates that the next residue is phosphorylated). 14-3-3 proteins appear to effect intracellular signalling in one of three ways - by direct regulation of the catalytic activity of the bound protein, by regulating interactions between the bound protein and other molecules in the cell by sequestration or modification or by controlling the subcellular localisation of the bound ligand. Proteins appear to initially bind to a single dominant site and then subsequently to many, much weaker secondary interaction sites. The 14-3-3 dimer is capable of changing the conformation of its bound ligand whilst itself undergoing minimal structural alteration. This entry represents the structural domain found in 14-3-3 proteins.; PDB: 2O8P_A 3AXY_D 2C74_A 2C63_A 4DX0_A 1YWT_A 3P1O_A 3P1N_A 4DAU_A 3U9X_A ....
Probab=74.52 E-value=88 Score=30.46 Aligned_cols=58 Identities=16% Similarity=0.364 Sum_probs=36.7
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC-ChHHHHHHHHHHHH-cCChHHHHHHHHH
Q 003563 35 KMLGEASLQYAYGNFEQAISLLKEVVRLSPN-LPETYNTLGLAHSA-LGNHKSAFDFYVI 92 (810)
Q Consensus 35 ~~l~~a~~~~~~g~~~~A~~~~~~~l~~~p~-~~~~~~~l~~~~~~-~g~~~~A~~~~~~ 92 (810)
.++..|..+.+.|+|++.+..+++++..+|+ +.+-...++.+|-. .|....+...+..
T Consensus 3 ~li~~Aklaeq~eRy~dmv~~mk~~~~~~~eLt~eERnLlsvayKn~i~~~R~s~R~l~~ 62 (236)
T PF00244_consen 3 ELIYLAKLAEQAERYDDMVEYMKQLIEMNPELTEEERNLLSVAYKNVIGSRRASWRILSS 62 (236)
T ss_dssp HHHHHHHHHHHTTHHHHHHHHHHHHHHTSS---HHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhcCHHHHHHHHHHHHccCCCCCHHHHHHHHHHHHhccccchHHHHhhhh
Confidence 4566788888888888888888888888765 44555556665532 3444444444443
No 404
>COG3947 Response regulator containing CheY-like receiver and SARP domains [Signal transduction mechanisms]
Probab=74.30 E-value=13 Score=36.46 Aligned_cols=60 Identities=18% Similarity=0.197 Sum_probs=38.6
Q ss_pred HHHHHHHHHHcCChHHHHHHHHHHHhhCCCCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Q 003563 172 TKTGAQLFLKCGQTARSIGILEEYLKVHPSDADLSVIDLLVAILMENNAYEKTLQHIEHAQI 233 (810)
Q Consensus 172 ~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~ 233 (810)
+...+..|...|.+.+|+++.++++..+|-+.. .+..+..++...|+--.+++.|++..+
T Consensus 282 lgkva~~yle~g~~neAi~l~qr~ltldpL~e~--~nk~lm~~la~~gD~is~~khyerya~ 341 (361)
T COG3947 282 LGKVARAYLEAGKPNEAIQLHQRALTLDPLSEQ--DNKGLMASLATLGDEISAIKHYERYAE 341 (361)
T ss_pred HHHHHHHHHHcCChHHHHHHHHHHhhcChhhhH--HHHHHHHHHHHhccchhhhhHHHHHHH
Confidence 344556666677777777777777777666554 566666667777776666666665543
No 405
>PF09670 Cas_Cas02710: CRISPR-associated protein (Cas_Cas02710)
Probab=73.24 E-value=42 Score=35.45 Aligned_cols=19 Identities=21% Similarity=0.298 Sum_probs=14.3
Q ss_pred HHccCHHHHHHHHHHHHhh
Q 003563 324 LSLKERAHAIMFFYKALDR 342 (810)
Q Consensus 324 ~~~g~~~~A~~~~~~al~~ 342 (810)
...|+|+.|+..+-+++++
T Consensus 252 a~~gryddAvarlYR~lEl 270 (379)
T PF09670_consen 252 AAQGRYDDAVARLYRALEL 270 (379)
T ss_pred HhcCCHHHHHHHHHHHHHH
Confidence 3567888888888777765
No 406
>PF04097 Nic96: Nup93/Nic96; InterPro: IPR007231 Nup93/Nic96 is a component of the nuclear pore complex. It is required for the correct assembly of the nuclear pore complex []. In Saccharomyces cerevisiae, Nic96 has been shown to be involved in the distribution and cellular concentration of the GTPase Gsp1 []. The structure of Nic96 has revealed a mostly alpha helical structure [].; GO: 0006810 transport, 0005643 nuclear pore; PDB: 2QX5_B 2RFO_A.
Probab=73.16 E-value=1.6e+02 Score=33.64 Aligned_cols=24 Identities=25% Similarity=0.320 Sum_probs=15.0
Q ss_pred HHHHcCCHHHHHHhcCCCCCCCccc
Q 003563 356 LLLEEAKEEEAITLLSPPKDLDSLD 380 (810)
Q Consensus 356 ~~~~~g~~~~A~~~~~~a~~~~~~~ 380 (810)
-+...|++++|++.+++.- +-|.+
T Consensus 514 ~~~~~g~~~~AL~~i~~L~-liP~~ 537 (613)
T PF04097_consen 514 DLYHAGQYEQALDIIEKLD-LIPLD 537 (613)
T ss_dssp HHHHTT-HHHHHHHHHHTT--S-S-
T ss_pred HHHHcCCHHHHHHHHHhCC-CCCCC
Confidence 3467899999999988654 55543
No 407
>smart00299 CLH Clathrin heavy chain repeat homology.
Probab=72.88 E-value=64 Score=28.17 Aligned_cols=77 Identities=17% Similarity=0.198 Sum_probs=36.6
Q ss_pred HHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHhhCCCCCChHHHHHHHHHHHHcCCHHHHH
Q 003563 146 VEIGDYEKAAESYEQIQKLFPDNVDATKTGAQLFLKCGQTARSIGILEEYLKVHPSDADLSVIDLLVAILMENNAYEKTL 225 (810)
Q Consensus 146 ~~~g~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~~~la~~~~~~g~~~~A~ 225 (810)
...+.....+.+++.++..++.++.....+..+|.+. +..+.+..++. .++..+ ....+.++.+.+-++++.
T Consensus 18 ~~~~~~~~l~~yLe~~~~~~~~~~~~~~~li~ly~~~-~~~~ll~~l~~----~~~~yd---~~~~~~~c~~~~l~~~~~ 89 (140)
T smart00299 18 EKRNLLEELIPYLESALKLNSENPALQTKLIELYAKY-DPQKEIERLDN----KSNHYD---IEKVGKLCEKAKLYEEAV 89 (140)
T ss_pred HhCCcHHHHHHHHHHHHccCccchhHHHHHHHHHHHH-CHHHHHHHHHh----ccccCC---HHHHHHHHHHcCcHHHHH
Confidence 3445556666666666655555555555555555543 22333333332 112222 223444445555555555
Q ss_pred HHHHH
Q 003563 226 QHIEH 230 (810)
Q Consensus 226 ~~~~~ 230 (810)
..+.+
T Consensus 90 ~l~~k 94 (140)
T smart00299 90 ELYKK 94 (140)
T ss_pred HHHHh
Confidence 55544
No 408
>PF10373 EST1_DNA_bind: Est1 DNA/RNA binding domain; InterPro: IPR018834 Est1 is a protein which recruits or activates telomerase at the site of polymerisation [, ]. This is the DNA/RNA binding domain of EST1 []. ; PDB: 1YA0_B.
Probab=72.75 E-value=15 Score=36.95 Aligned_cols=62 Identities=26% Similarity=0.374 Sum_probs=33.3
Q ss_pred HHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHH
Q 003563 86 AFDFYVIAAHLSPKDSALWKQLLTFAVQKGDTAQAMYYIRQAIRAEPKDISLRIHLASFYVE 147 (810)
Q Consensus 86 A~~~~~~a~~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~ 147 (810)
|..+|.+|..+.|++...+..+|.++...|+.-.|+.+|-+++-.....+.+..++..++.+
T Consensus 1 A~~~Y~~A~~l~P~~G~p~nQLAvl~~~~~~~l~avy~y~Rsl~~~~Pf~~A~~NL~~lf~~ 62 (278)
T PF10373_consen 1 AERYYRKAIRLLPSNGNPYNQLAVLASYQGDDLDAVYYYIRSLAVRIPFPSARENLQKLFEK 62 (278)
T ss_dssp HHHHHHHHHHH-TTBSHHHHHHHHHHHHTT-HHHHHHHHHHHHSSSB--HHHHHHHHHHHHH
T ss_pred CHHHHHHHHHhCCCCCCcccchhhhhccccchHHHHHHHHHHHhcCCCcHHHHHHHHHHHHH
Confidence 45556666666666666666666666666666666666666654433334555555555544
No 409
>KOG4014 consensus Uncharacterized conserved protein (contains TPR repeat) [Function unknown]
Probab=72.10 E-value=79 Score=28.84 Aligned_cols=168 Identities=13% Similarity=0.061 Sum_probs=109.4
Q ss_pred CCChHHHHHHHHHHHH-cCChHHHHHHHHHHHhcCCCCHHHHHHHHHHHH-----HcCCHHHHHHHHHHHHHcCCCCHHH
Q 003563 64 PNLPETYNTLGLAHSA-LGNHKSAFDFYVIAAHLSPKDSALWKQLLTFAV-----QKGDTAQAMYYIRQAIRAEPKDISL 137 (810)
Q Consensus 64 p~~~~~~~~l~~~~~~-~g~~~~A~~~~~~a~~~~p~~~~~~~~la~~~~-----~~g~~~~A~~~~~~al~~~p~~~~~ 137 (810)
...|++...||..+.. +.++++|...|..--..+ ..+...+.+|..++ ..+++..|++++..+-. .+.+.+
T Consensus 31 EK~Pe~C~lLgdYlEgi~knF~~A~kv~K~nCden-~y~kSCyKyG~y~~~GKgG~~~~l~~a~r~~~~aC~--~n~~~a 107 (248)
T KOG4014|consen 31 EKRPESCQLLGDYLEGIQKNFQAAVKVFKKNCDEN-SYPKSCYKYGMYMLAGKGGDDASLSKAIRPMKIACD--ANIPQA 107 (248)
T ss_pred cCCchHHHHHHHHHHHHHHHHHHHHHHHHhccccc-CCcHHHHHhhhhhhcccCCCccCHHHHHHHHHHHhc--cCCHHH
Confidence 4578888999987764 568899998887755433 34566666666554 23578899999998876 456778
Q ss_pred HHHHHHHHHHc-----C--CHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHhhCCCCCChHHHHH
Q 003563 138 RIHLASFYVEI-----G--DYEKAAESYEQIQKLFPDNVDATKTGAQLFLKCGQTARSIGILEEYLKVHPSDADLSVIDL 210 (810)
Q Consensus 138 ~~~la~~~~~~-----g--~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~~~ 210 (810)
...+|.++..- + +.++|.+++.++..+ ++..+.+.|...++.- .++ +....|....+ . .
T Consensus 108 C~~~gLl~~~g~~~r~~dpd~~Ka~~y~traCdl--~~~~aCf~LS~m~~~g--~~k-------~~t~ap~~g~p-~--~ 173 (248)
T KOG4014|consen 108 CRYLGLLHWNGEKDRKADPDSEKAERYMTRACDL--EDGEACFLLSTMYMGG--KEK-------FKTNAPGEGKP-L--D 173 (248)
T ss_pred HhhhhhhhccCcCCccCCCCcHHHHHHHHHhccC--CCchHHHHHHHHHhcc--chh-------hcccCCCCCCC-c--c
Confidence 88888777542 2 378899999988766 4566677777666543 222 22224422221 1 3
Q ss_pred HHHHHHHcCCHHHHHHHHHHHHHHhcCCCCCcHHHHHHHHHHHH
Q 003563 211 LVAILMENNAYEKTLQHIEHAQIVRFSGKELPLKLKVKAGICYL 254 (810)
Q Consensus 211 la~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~la~~~~ 254 (810)
.+..+.-..+.++|.++--++.++ ..+.+..++...|.
T Consensus 174 ~~~~~~~~kDMdka~qfa~kACel------~~~~aCAN~SrMyk 211 (248)
T KOG4014|consen 174 RAELGSLSKDMDKALQFAIKACEL------DIPQACANVSRMYK 211 (248)
T ss_pred hhhhhhhhHhHHHHHHHHHHHHhc------CChHHHhhHHHHHH
Confidence 455566678889999988888766 33444455555443
No 410
>PF10255 Paf67: RNA polymerase I-associated factor PAF67; InterPro: IPR019382 RNA polymerase I is a multi-subunit enzyme and its transcription competence is dependent on the presence of PAF67 [].
Probab=71.48 E-value=37 Score=35.76 Aligned_cols=60 Identities=22% Similarity=0.184 Sum_probs=45.7
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHH--------cCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Q 003563 104 WKQLLTFAVQKGDTAQAMYYIRQAIR--------AEPKDISLRIHLASFYVEIGDYEKAAESYEQIQK 163 (810)
Q Consensus 104 ~~~la~~~~~~g~~~~A~~~~~~al~--------~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~ 163 (810)
...+.+++.-.|+|..|++.++..-- ..+-+...++..|-+|..+++|.+|+..|..++-
T Consensus 125 ligLlRvh~LLGDY~~Alk~l~~idl~~~~l~~~V~~~~is~~YyvGFaylMlrRY~DAir~f~~iL~ 192 (404)
T PF10255_consen 125 LIGLLRVHCLLGDYYQALKVLENIDLNKKGLYTKVPACHISTYYYVGFAYLMLRRYADAIRTFSQILL 192 (404)
T ss_pred HHHHHHHHHhccCHHHHHHHhhccCcccchhhccCcchheehHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44667788899999999988765311 1123455688899999999999999999988764
No 411
>KOG0686 consensus COP9 signalosome, subunit CSN1 [Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=71.32 E-value=1.1e+02 Score=31.86 Aligned_cols=65 Identities=15% Similarity=0.202 Sum_probs=40.6
Q ss_pred HHHHHHHHHHHHcCChHHHHHHHHHHHhhCCCCCC-hHHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Q 003563 170 DATKTGAQLFLKCGQTARSIGILEEYLKVHPSDAD-LSVIDLLVAILMENNAYEKTLQHIEHAQIV 234 (810)
Q Consensus 170 ~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~-~~~~~~la~~~~~~g~~~~A~~~~~~~~~~ 234 (810)
.++..+|.-|...|+.+.|++.|.++-........ ...+.++..+-...|+|.....+..++...
T Consensus 151 ra~~Dl~dhy~~cG~l~~Alr~YsR~RdYCTs~khvInm~ln~i~VSI~~~nw~hv~sy~~~A~st 216 (466)
T KOG0686|consen 151 RALEDLGDHYLDCGQLDNALRCYSRARDYCTSAKHVINMCLNLILVSIYMGNWGHVLSYISKAEST 216 (466)
T ss_pred HHHHHHHHHHHHhccHHHHHhhhhhhhhhhcchHHHHHHHHHHHHHHHhhcchhhhhhHHHHHHhC
Confidence 35666777777788888888877775554433221 123455566666677777776666666543
No 412
>PF12854 PPR_1: PPR repeat
Probab=70.99 E-value=11 Score=23.51 Aligned_cols=25 Identities=20% Similarity=0.179 Sum_probs=11.0
Q ss_pred HHHHHHHHHHHHHccCHHHHHHHHH
Q 003563 313 GYLYLKLAECYLSLKERAHAIMFFY 337 (810)
Q Consensus 313 ~~~~~~la~~~~~~g~~~~A~~~~~ 337 (810)
...|..+...+.+.|+.++|.+.++
T Consensus 7 ~~ty~~lI~~~Ck~G~~~~A~~l~~ 31 (34)
T PF12854_consen 7 VVTYNTLIDGYCKAGRVDEAFELFD 31 (34)
T ss_pred HhHHHHHHHHHHHCCCHHHHHHHHH
Confidence 3344444444444444444444443
No 413
>PF12854 PPR_1: PPR repeat
Probab=70.10 E-value=12 Score=23.29 Aligned_cols=24 Identities=4% Similarity=0.163 Sum_probs=15.5
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHH
Q 003563 207 VIDLLVAILMENNAYEKTLQHIEH 230 (810)
Q Consensus 207 ~~~~la~~~~~~g~~~~A~~~~~~ 230 (810)
.|+.+...+.+.|+.++|.+.+++
T Consensus 9 ty~~lI~~~Ck~G~~~~A~~l~~~ 32 (34)
T PF12854_consen 9 TYNTLIDGYCKAGRVDEAFELFDE 32 (34)
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHh
Confidence 566666666666666666666654
No 414
>PF10952 DUF2753: Protein of unknown function (DUF2753); InterPro: IPR020206 This entry represents a group of uncharacterised proteins.
Probab=69.82 E-value=16 Score=30.63 Aligned_cols=69 Identities=17% Similarity=0.163 Sum_probs=51.1
Q ss_pred hhhhHHHHHHHhChhhHHHHHHHHHhccccccCCCCCCCCCCCcccccCCCCccc---ccHHHHHHHHHHHHhcCCHHHH
Q 003563 724 ALYNIARACHHVGLVSLAASYYEKVLAIKEKDYPIPKHNDKRPDLMESGESGYCD---LQREAAYNLHLIYKNSGAVDLA 800 (810)
Q Consensus 724 ~~ynlgr~~~~lg~~~~Ai~~Y~~vL~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---l~~eaa~nl~~iy~~~g~~~~A 800 (810)
-+.++|..-.+.|..-.||-+|+.+|.+..+. . . +.+....| .+.-.-+||+..|+..|+.+-.
T Consensus 3 ~htllAd~a~~~~~~l~si~hYQqAls~se~~---~----~------~~~~el~dll~i~VisCHNLA~FWR~~gd~~yE 69 (140)
T PF10952_consen 3 KHTLLADQAFKEADPLRSILHYQQALSLSEEI---D----E------SNEIELEDLLTISVISCHNLADFWRSQGDSDYE 69 (140)
T ss_pred hHHHHHHHHhhcccHHHHHHHHHHHHHHHHHh---c----c------cccccHHHHHHHHHHHHhhHHHHHHHcCChHHH
Confidence 36688999999999999999999999886542 0 0 00011112 3566779999999999999888
Q ss_pred HHHHH
Q 003563 801 RQLLK 805 (810)
Q Consensus 801 ~~~~~ 805 (810)
..+++
T Consensus 70 LkYLq 74 (140)
T PF10952_consen 70 LKYLQ 74 (140)
T ss_pred HHHHH
Confidence 87764
No 415
>COG4455 ImpE Protein of avirulence locus involved in temperature-dependent protein secretion [General function prediction only]
Probab=69.42 E-value=34 Score=32.13 Aligned_cols=58 Identities=16% Similarity=0.157 Sum_probs=30.2
Q ss_pred HHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHhhCCCC
Q 003563 145 YVEIGDYEKAAESYEQIQKLFPDNVDATKTGAQLFLKCGQTARSIGILEEYLKVHPSD 202 (810)
Q Consensus 145 ~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~ 202 (810)
+.+.+...+|+...+.-++..|.+......+-.++.-.|++++|...++-+-.+.|+.
T Consensus 11 LL~~~sL~dai~~a~~qVkakPtda~~RhflfqLlcvaGdw~kAl~Ql~l~a~l~p~~ 68 (273)
T COG4455 11 LLDDNSLQDAIGLARDQVKAKPTDAGGRHFLFQLLCVAGDWEKALAQLNLAATLSPQD 68 (273)
T ss_pred HHHhccHHHHHHHHHHHHhcCCccccchhHHHHHHhhcchHHHHHHHHHHHhhcCccc
Confidence 3344455555555555555555555555555555555555555555555555555544
No 416
>PF11817 Foie-gras_1: Foie gras liver health family 1; InterPro: IPR021773 Mutating the gene foie gras in zebrafish has been shown to affect development; the mutants develop large, lipid-filled hepatocytes in the liver, resembling those in individuals with fatty liver disease []. Foie-gras protein is long and has several well-defined domains though none of them has a known function. We have annotated this one as the first []. THe C terminus of this region contains TPR repeats.
Probab=69.25 E-value=39 Score=33.22 Aligned_cols=60 Identities=13% Similarity=0.076 Sum_probs=34.1
Q ss_pred HHHHHHHHHHHcCChHHHHHHHHHHHhhCCCCCC----hHHHHHHHHHHHHcCCHHHHHHHHHH
Q 003563 171 ATKTGAQLFLKCGQTARSIGILEEYLKVHPSDAD----LSVIDLLVAILMENNAYEKTLQHIEH 230 (810)
Q Consensus 171 ~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~----~~~~~~la~~~~~~g~~~~A~~~~~~ 230 (810)
+...+|..|+..|++++|.++|+.+........- ..++..+..++...|+.+..+.+.-+
T Consensus 180 l~~~~A~ey~~~g~~~~A~~~l~~~~~~yr~egW~~l~~~~l~~l~~Ca~~~~~~~~~l~~~le 243 (247)
T PF11817_consen 180 LSLEMAEEYFRLGDYDKALKLLEPAASSYRREGWWSLLTEVLWRLLECAKRLGDVEDYLTTSLE 243 (247)
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhCCcHHHHHHHHHHHHHHHHHhCCHHHHHHHHHH
Confidence 3445666666666666666666666544332211 13455566666666666666655443
No 417
>cd02682 MIT_AAA_Arch MIT: domain contained within Microtubule Interacting and Trafficking molecules. This sub-family of MIT domains is found in mostly archaebacterial AAA-ATPases. The molecular function of the MIT domain is unclear.
Probab=67.69 E-value=25 Score=26.77 Aligned_cols=31 Identities=26% Similarity=0.141 Sum_probs=23.4
Q ss_pred HHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Q 003563 31 PGVTKMLGEASLQYAYGNFEQAISLLKEVVR 61 (810)
Q Consensus 31 ~~~~~~l~~a~~~~~~g~~~~A~~~~~~~l~ 61 (810)
..+..+..+|..+-..|++++|+.+|+++++
T Consensus 4 ~~A~~~a~~AVe~D~~gr~~eAi~~Y~~aIe 34 (75)
T cd02682 4 EMARKYAINAVKAEKEGNAEDAITNYKKAIE 34 (75)
T ss_pred HHHHHHHHHHHHHHhcCCHHHHHHHHHHHHH
Confidence 4556677788888888888888888777654
No 418
>PF10255 Paf67: RNA polymerase I-associated factor PAF67; InterPro: IPR019382 RNA polymerase I is a multi-subunit enzyme and its transcription competence is dependent on the presence of PAF67 [].
Probab=67.25 E-value=13 Score=39.03 Aligned_cols=59 Identities=25% Similarity=0.216 Sum_probs=32.1
Q ss_pred HHHHHHHHcCCcHHHHHHHHHHH-------hccCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHh
Q 003563 283 EVADTLMSLGHSNSALKYYHFLE-------TNAGTDNGYLYLKLAECYLSLKERAHAIMFFYKALD 341 (810)
Q Consensus 283 ~la~~~~~~~~~~~A~~~~~~~~-------~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~ 341 (810)
.+.+++.-.|+|..|++.++.+. ....+-...+++.+|-+|..+++|.+|+..|..++-
T Consensus 127 gLlRvh~LLGDY~~Alk~l~~idl~~~~l~~~V~~~~is~~YyvGFaylMlrRY~DAir~f~~iL~ 192 (404)
T PF10255_consen 127 GLLRVHCLLGDYYQALKVLENIDLNKKGLYTKVPACHISTYYYVGFAYLMLRRYADAIRTFSQILL 192 (404)
T ss_pred HHHHHHHhccCHHHHHHHhhccCcccchhhccCcchheehHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34444555555555555544321 111233445666677777777777777777766653
No 419
>KOG4521 consensus Nuclear pore complex, Nup160 component [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=66.91 E-value=2e+02 Score=34.44 Aligned_cols=131 Identities=14% Similarity=0.004 Sum_probs=73.0
Q ss_pred HHHHHHHcCCHHHHHHHHHHHHHHhcCCCCCcHHHHHHHHHHHHhcCCHHHHHHHHHHhhccCCchhHhHHHHHHHHHHH
Q 003563 211 LVAILMENNAYEKTLQHIEHAQIVRFSGKELPLKLKVKAGICYLRLGNMEKAEILFADLQWKNAIDHADLITEVADTLMS 290 (810)
Q Consensus 211 la~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~la~~~~~ 290 (810)
..+++...+-.+.+.+...++++..+++.|........+=.-+..+|.+-+|...+-+.-. .+...+.+..+..++++
T Consensus 989 v~rlle~hn~~E~vcQlA~~AIe~l~dd~ps~a~~~t~vFnhhldlgh~~qAy~ai~~npd--serrrdcLRqlvivLfe 1066 (1480)
T KOG4521|consen 989 VVRLLEEHNHAEEVCQLAVKAIENLPDDNPSVALISTTVFNHHLDLGHWFQAYKAILRNPD--SERRRDCLRQLVIVLFE 1066 (1480)
T ss_pred HHHHHHHhccHHHHHHHHHHHHHhCCCcchhHHHHHHHHHHhhhchhhHHHHHHHHHcCCc--HHHHHHHHHHHHHHHHh
Confidence 3455566677777777777788777766665555566566666777777777666554322 12244556666777777
Q ss_pred cCCcHH------------HHH-HHHHHHhccCCCCHHHHHHHHHHHHHccCHHHHH-HHHHHHHhhc
Q 003563 291 LGHSNS------------ALK-YYHFLETNAGTDNGYLYLKLAECYLSLKERAHAI-MFFYKALDRF 343 (810)
Q Consensus 291 ~~~~~~------------A~~-~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~-~~~~~al~~~ 343 (810)
.|+.+. -.. +++.+-....-.....|..+--.+...+++.+|- -.|+.+..+.
T Consensus 1067 cg~l~~L~~fpfigl~~eve~~l~esaaRs~~~mk~nyYelLYAfh~~RhN~RkaatvMYEyamrl~ 1133 (1480)
T KOG4521|consen 1067 CGELEALATFPFIGLEQEVEDFLRESAARSSPSMKKNYYELLYAFHVARHNFRKAATVMYEYAMRLE 1133 (1480)
T ss_pred ccchHHHhhCCccchHHHHHHHHHHHHhhcCccccccHHHHHHHHHHhhcchhHHHHHHHHHHHHhc
Confidence 766532 222 2222222212233444444445555666666554 3455555543
No 420
>KOG0546 consensus HSP90 co-chaperone CPR7/Cyclophilin [Posttranslational modification, protein turnover, chaperones]
Probab=66.65 E-value=10 Score=38.22 Aligned_cols=128 Identities=12% Similarity=0.182 Sum_probs=82.8
Q ss_pred HHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCHH
Q 003563 39 EASLQYAYGNFEQAISLLKEVVRLSPNLPETYNTLGLAHSALGNHKSAFDFYVIAAHLSPKDSALWKQLLTFAVQKGDTA 118 (810)
Q Consensus 39 ~a~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~p~~~~~~~~la~~~~~~g~~~ 118 (810)
.+...+..+++..|..-+.++++.-... ...+..+... +...+.+.-......++.+-...+.+.
T Consensus 228 ~~~~~~kk~~~~~a~~k~~k~~r~~~~~------------s~~~~~e~~~---~~~~~~~~r~~~~~n~~~~~lk~~~~~ 292 (372)
T KOG0546|consen 228 IGNKEFKKQRYREALAKYRKALRYLSEQ------------SRDREKEQEN---RIPPLRELRFSIRRNLAAVGLKVKGRG 292 (372)
T ss_pred cchhhhhhccHhHHHHHHHHHhhhhccc------------cccccccccc---ccccccccccccccchHHhcccccCCC
Confidence 4566889999999999999887642110 0000001100 011111112223344677777788888
Q ss_pred HHHHHHHHHHHcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHH
Q 003563 119 QAMYYIRQAIRAEPKDISLRIHLASFYVEIGDYEKAAESYEQIQKLFPDNVDATKTGAQLFLK 181 (810)
Q Consensus 119 ~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~ 181 (810)
.|+..-..++..++....+++.++..+....++++|++.++.+....|++......+..+-..
T Consensus 293 ~a~~~~~~~~~~~~s~tka~~Rr~~~~~~~~~~~~a~~~~~~a~~~~p~d~~i~~~~~~~~~~ 355 (372)
T KOG0546|consen 293 GARFRTNEALRDERSKTKAHYRRGQAYKLLKNYDEALEDLKKAKQKAPNDKAIEEELENVRQK 355 (372)
T ss_pred cceeccccccccChhhCcHHHHHHhHHHhhhchhhhHHHHHHhhccCcchHHHHHHHHHhhhH
Confidence 888777777777777788888888888888888888888888888888887666555544333
No 421
>KOG0889 consensus Histone acetyltransferase SAGA, TRRAP/TRA1 component, PI-3 kinase superfamily [Signal transduction mechanisms; Chromatin structure and dynamics; Replication, recombination and repair; Cell cycle control, cell division, chromosome partitioning]
Probab=66.05 E-value=3.5e+02 Score=37.05 Aligned_cols=115 Identities=10% Similarity=-0.047 Sum_probs=75.2
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHhhccCCchhHhHHHHH---HHHHHHcC-CcHHHHHHHHHHHh--ccCCCCHHHHH
Q 003563 244 KLKVKAGICYLRLGNMEKAEILFADLQWKNAIDHADLITEV---ADTLMSLG-HSNSALKYYHFLET--NAGTDNGYLYL 317 (810)
Q Consensus 244 ~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l---a~~~~~~~-~~~~A~~~~~~~~~--~~~~~~~~~~~ 317 (810)
.+....|.+..+.|-++-++..+.++.....-+..++...+ +.++.... ....+++..+..-- ......++.+.
T Consensus 2737 ~~in~fakvArkh~l~~vcl~~L~~iytlp~veiqdaF~K~req~~c~l~~~~e~~~gLevi~sTNl~yF~~~q~aeff~ 2816 (3550)
T KOG0889|consen 2737 WAINRFAKVARKHGLPDVCLNQLAKIYTLPNVEIQDAFQKLREQAKCYLQNKNELKTGLEVIESTNLMYFSDRQKAEFFT 2816 (3550)
T ss_pred HHHHHHHHHHHhcCChHHHHHHHHHHhccCcchHHHHHHHHHHHHHHHhcChHHHHHHHHHHhcccHHHHhhHHHHHHHH
Confidence 34455666667778888888888887554332333443333 34444433 55556655542211 11233567788
Q ss_pred HHHHHHHHccCHHHHHHHHHHHHhhcCCCHHHHHHHHHHHH
Q 003563 318 KLAECYLSLKERAHAIMFFYKALDRFEDNIDARLTLASLLL 358 (810)
Q Consensus 318 ~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~ 358 (810)
..|....+.|+.++|-..|..|++++-.-+.+|..-|....
T Consensus 2817 lkG~f~~kL~~~eeAn~~fs~AvQi~~~l~KaW~~Wg~y~~ 2857 (3550)
T KOG0889|consen 2817 LKGMFLEKLGKFEEANKAFSAAVQIDDGLGKAWAEWGKYLD 2857 (3550)
T ss_pred hhhHHHHHhcCcchhHHHHHHHHHHHhhhHHHHHHHHHHHH
Confidence 88999999999999999999999998888888877665443
No 422
>COG1747 Uncharacterized N-terminal domain of the transcription elongation factor GreA [Function unknown]
Probab=64.55 E-value=2.1e+02 Score=30.90 Aligned_cols=239 Identities=11% Similarity=0.015 Sum_probs=138.1
Q ss_pred HcCCHHHHHHHHHHHHHhCCCChHHHHHHHH------------------HHHHcCChHHHHHHHHHHHhcCCCCHHHHHH
Q 003563 45 AYGNFEQAISLLKEVVRLSPNLPETYNTLGL------------------AHSALGNHKSAFDFYVIAAHLSPKDSALWKQ 106 (810)
Q Consensus 45 ~~g~~~~A~~~~~~~l~~~p~~~~~~~~l~~------------------~~~~~g~~~~A~~~~~~a~~~~p~~~~~~~~ 106 (810)
.+|-.+.-..++.+-+....+...+++.-|. ++....++.-....+.+++... .+..+++.
T Consensus 26 ~~~~~~~~~~ic~~hl~~~k~si~~lyisg~~~~s~~~l~d~~l~~~~~~f~~n~k~~~veh~c~~~l~~~-e~kmal~e 104 (711)
T COG1747 26 RQSILDVLKGICDEHLAHSKNSIIALYISGIISLSKQLLDDSCLVTLLTIFGDNHKNQIVEHLCTRVLEYG-ESKMALLE 104 (711)
T ss_pred HhhHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHhhhccccchHHHHHHHHhccchHHHHHHHHHHHHHHhc-chHHHHHH
Confidence 3444444455555555544444444444443 3333334444455566666544 45678899
Q ss_pred HHHHHHHcCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC---C---HHHHHHHHHHHH
Q 003563 107 LLTFAVQKGDTAQAMYYIRQAIRAEPKDISLRIHLASFYVEIGDYEKAAESYEQIQKLFPD---N---VDATKTGAQLFL 180 (810)
Q Consensus 107 la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~---~---~~~~~~la~~~~ 180 (810)
++.+|... ..++-...+++.++.+-++...-..++..|.. ++..++..+|.+++...-. + .++|..+-..
T Consensus 105 l~q~y~en-~n~~l~~lWer~ve~dfnDvv~~ReLa~~yEk-ik~sk~a~~f~Ka~yrfI~~~q~~~i~evWeKL~~~-- 180 (711)
T COG1747 105 LLQCYKEN-GNEQLYSLWERLVEYDFNDVVIGRELADKYEK-IKKSKAAEFFGKALYRFIPRRQNAAIKEVWEKLPEL-- 180 (711)
T ss_pred HHHHHHhc-CchhhHHHHHHHHHhcchhHHHHHHHHHHHHH-hchhhHHHHHHHHHHHhcchhhhhhHHHHHHHHHHh--
Confidence 99999988 56777888999999888888888888888877 8999999999999875322 1 1233333221
Q ss_pred HcCChHHHHHHHHHHHhhCCCCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhcCCCCCcHHHHHHHHHHHHhcCCHH
Q 003563 181 KCGQTARSIGILEEYLKVHPSDADLSVIDLLVAILMENNAYEKTLQHIEHAQIVRFSGKELPLKLKVKAGICYLRLGNME 260 (810)
Q Consensus 181 ~~g~~~~A~~~~~~~l~~~p~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~ 260 (810)
--.+.+.-.....+.-..........++..+-.-|....++.+|+..+...++. +..+..++-.+...+..
T Consensus 181 i~dD~D~fl~l~~kiqt~lg~~~~~Vl~qdv~~~Ys~~eN~~eai~Ilk~il~~----d~k~~~ar~~~i~~lRd----- 251 (711)
T COG1747 181 IGDDKDFFLRLQKKIQTKLGEGRGSVLMQDVYKKYSENENWTEAIRILKHILEH----DEKDVWARKEIIENLRD----- 251 (711)
T ss_pred ccccHHHHHHHHHHHHHhhccchHHHHHHHHHHHhccccCHHHHHHHHHHHhhh----cchhhhHHHHHHHHHHH-----
Confidence 123344444444443333322222122233334566678899999999888887 45555544443332221
Q ss_pred HHHHHHHHhhccCCchhHhHHHHHHHHHHHcCCcHHHHHHHHHHHhc
Q 003563 261 KAEILFADLQWKNAIDHADLITEVADTLMSLGHSNSALKYYHFLETN 307 (810)
Q Consensus 261 ~A~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~ 307 (810)
-... . ...+-|.....+-..-.++.+++.-|+..+..
T Consensus 252 --------~y~~-~-~~~e~yl~~s~i~~~~rnf~~~l~dFek~m~f 288 (711)
T COG1747 252 --------KYRG-H-SQLEEYLKISNISQSGRNFFEALNDFEKLMHF 288 (711)
T ss_pred --------Hhcc-c-hhHHHHHHhcchhhccccHHHHHHHHHHHhee
Confidence 1111 1 13333444455555556777888888777654
No 423
>KOG0276 consensus Vesicle coat complex COPI, beta' subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=64.15 E-value=1e+02 Score=33.78 Aligned_cols=47 Identities=23% Similarity=0.277 Sum_probs=36.6
Q ss_pred HHcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHcCChHHHHHHHHHHHh
Q 003563 44 YAYGNFEQAISLLKEVVRLSPNLPETYNTLGLAHSALGNHKSAFDFYVIAAH 95 (810)
Q Consensus 44 ~~~g~~~~A~~~~~~~l~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~ 95 (810)
.+.|+++.|.++..++ ++..-|..||......|++..|.++|.++..
T Consensus 648 l~lgrl~iA~~la~e~-----~s~~Kw~~Lg~~al~~~~l~lA~EC~~~a~d 694 (794)
T KOG0276|consen 648 LKLGRLDIAFDLAVEA-----NSEVKWRQLGDAALSAGELPLASECFLRARD 694 (794)
T ss_pred hhcCcHHHHHHHHHhh-----cchHHHHHHHHHHhhcccchhHHHHHHhhcc
Confidence 4556666665554443 5677899999999999999999999998754
No 424
>PF04090 RNA_pol_I_TF: RNA polymerase I specific initiation factor; InterPro: IPR007224 The RNA polymerase I specific transcription initiation factor Rrn11 is a member of a multiprotein complex essential for the initiation of transcription by RNA polymerase I. Binding to the DNA template is dependent on the initial binding of other factors [].
Probab=63.05 E-value=1.3e+02 Score=28.30 Aligned_cols=38 Identities=24% Similarity=0.267 Sum_probs=19.8
Q ss_pred HHHHHHHHcCCHHHHHHHHHHHHHcCCCCHHHHHHHHH
Q 003563 106 QLLTFAVQKGDTAQAMYYIRQAIRAEPKDISLRIHLAS 143 (810)
Q Consensus 106 ~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~ 143 (810)
.+-......|+++.|-++|--.+...+-+....+.+|.
T Consensus 46 ~lLh~~llr~d~~rA~Raf~lLiR~~~VDiR~~W~iG~ 83 (199)
T PF04090_consen 46 DLLHLCLLRGDWDRAYRAFGLLIRCPEVDIRSLWGIGA 83 (199)
T ss_pred HHHHHHHHhccHHHHHHHHHHHHcCCCCChHhcchHHH
Confidence 33444445566666666666555555444444444443
No 425
>COG5536 BET4 Protein prenyltransferase, alpha subunit [Posttranslational modification, protein turnover, chaperones]
Probab=62.95 E-value=1.6e+02 Score=29.01 Aligned_cols=171 Identities=11% Similarity=0.130 Sum_probs=103.8
Q ss_pred HHHHHHHHHHHHcCCH-HHHHHHHHHHHHhCCCChHHHHHHHHHHHH--------cCChHHHHHHHHHHHhcCCCCHHHH
Q 003563 34 TKMLGEASLQYAYGNF-EQAISLLKEVVRLSPNLPETYNTLGLAHSA--------LGNHKSAFDFYVIAAHLSPKDSALW 104 (810)
Q Consensus 34 ~~~l~~a~~~~~~g~~-~~A~~~~~~~l~~~p~~~~~~~~l~~~~~~--------~g~~~~A~~~~~~a~~~~p~~~~~~ 104 (810)
..+++.........+| ..|++.=...+..+|..-..|...-.+... ..-.+.-+.++..++.-+|++-..|
T Consensus 32 ~~l~gr~~a~r~kkeys~~aLklt~elid~npe~ytiwnyr~~I~~h~~~~sedk~~~ldneld~~~~~lk~~PK~YqiW 111 (328)
T COG5536 32 HPLMGRFRAKRRKKEYSVRALKLTQELIDKNPEFYTIWNYRFSILKHVQMVSEDKEHLLDNELDFLDEALKDNPKNYQIW 111 (328)
T ss_pred chHHHHHHHHHhhhhcCHHHHHHhHHHHhhCHHHHHHHhhHHHHHhhhhhhcccchhhhhcHHHHHHHHHhcCCchhhhh
Confidence 3455666666666655 467777777777777665565554444433 1124455677788888888888888
Q ss_pred HHHHHHHHHc--CCHHHHHHHHHHHHHcCCCCHHHHHHHHHHH------HHcCCHHHHHHHHHHHHHhCCCCHHHHHHH-
Q 003563 105 KQLLTFAVQK--GDTAQAMYYIRQAIRAEPKDISLRIHLASFY------VEIGDYEKAAESYEQIQKLFPDNVDATKTG- 175 (810)
Q Consensus 105 ~~la~~~~~~--g~~~~A~~~~~~al~~~p~~~~~~~~la~~~------~~~g~~~~A~~~~~~~l~~~p~~~~~~~~l- 175 (810)
...-.++... .++..-+...++.++.+|.|-..|...-.+. ....++..-.++-..++..++.|..+|...
T Consensus 112 ~HR~~~Le~~p~~~~~rEl~itkklld~DsrNyH~W~YR~~vl~~ie~~~N~S~~k~e~eytt~~I~tdi~N~SaW~~r~ 191 (328)
T COG5536 112 HHRQWMLELFPKPSWGRELFITKKLLDSDSRNYHVWSYRRWVLRTIEDLFNFSDLKHELEYTTSLIETDIYNNSAWHHRY 191 (328)
T ss_pred HHHHHHHHhCCCcccchhHHHHHHHhcccccccceeeeEeeeeecchhhccchhHHHHHHhHHHHHhhCCCChHHHHHHH
Confidence 7666655544 5577777788888888888766554433333 333344455666667777788888777665
Q ss_pred --HHHHHHcCCh------HHHHHHHHHHHhhCCCCCC
Q 003563 176 --AQLFLKCGQT------ARSIGILEEYLKVHPSDAD 204 (810)
Q Consensus 176 --a~~~~~~g~~------~~A~~~~~~~l~~~p~~~~ 204 (810)
.......|++ ++-+++.-..+-.+|++..
T Consensus 192 ~~~~~~~~~~~visqk~l~~eL~~i~~~if~~p~~~S 228 (328)
T COG5536 192 IWIERRFNRGDVISQKYLEKELEYIFDKIFTDPDNQS 228 (328)
T ss_pred HHHHHHHhhcccchHHHHHHHHHHHHhhhhcCccccc
Confidence 3333334443 3333444444445676655
No 426
>PF04190 DUF410: Protein of unknown function (DUF410) ; InterPro: IPR007317 This is a family of conserved eukaryotic proteins with undetermined function.; PDB: 3LKU_E 2WPV_G.
Probab=62.25 E-value=1.7e+02 Score=29.02 Aligned_cols=84 Identities=19% Similarity=0.071 Sum_probs=45.3
Q ss_pred CCCcHHHHHHHHHHHHhcCCHHHHHHHHHHhhccCCchhHhHHHHHHHHHHHcCCcHHHHHHHHHHHhccCCCCHHHHHH
Q 003563 239 KELPLKLKVKAGICYLRLGNMEKAEILFADLQWKNAIDHADLITEVADTLMSLGHSNSALKYYHFLETNAGTDNGYLYLK 318 (810)
Q Consensus 239 ~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~ 318 (810)
...++.++..+|..+.+.|++.+|..+|-..- ++ ...+...+-......| .+.....+..
T Consensus 86 ~~Gdp~LH~~~a~~~~~e~~~~~A~~Hfl~~~--~~--~~~~~~~ll~~~~~~~----------------~~~e~dlfi~ 145 (260)
T PF04190_consen 86 KFGDPELHHLLAEKLWKEGNYYEAERHFLLGT--DP--SAFAYVMLLEEWSTKG----------------YPSEADLFIA 145 (260)
T ss_dssp TT--HHHHHHHHHHHHHTT-HHHHHHHHHTS---HH--HHHHHHHHHHHHHHHT----------------SS--HHHHHH
T ss_pred CCCCHHHHHHHHHHHHhhccHHHHHHHHHhcC--Ch--hHHHHHHHHHHHHHhc----------------CCcchhHHHH
Confidence 34566788888888888888888887776541 11 1111111222222222 3444444444
Q ss_pred HHH-HHHHccCHHHHHHHHHHHHhh
Q 003563 319 LAE-CYLSLKERAHAIMFFYKALDR 342 (810)
Q Consensus 319 la~-~~~~~g~~~~A~~~~~~al~~ 342 (810)
.|. .|...++...|...+....+.
T Consensus 146 RaVL~yL~l~n~~~A~~~~~~f~~~ 170 (260)
T PF04190_consen 146 RAVLQYLCLGNLRDANELFDTFTSK 170 (260)
T ss_dssp HHHHHHHHTTBHHHHHHHHHHHHHH
T ss_pred HHHHHHHHhcCHHHHHHHHHHHHHH
Confidence 443 466778888888877766654
No 427
>KOG0687 consensus 26S proteasome regulatory complex, subunit RPN7/PSMD6 [Posttranslational modification, protein turnover, chaperones]
Probab=61.25 E-value=1.8e+02 Score=29.46 Aligned_cols=100 Identities=12% Similarity=0.068 Sum_probs=48.6
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC---CH---HHHHHHHHHHHHcCChHHHHHHHHHHHhhCCCCCCh-HH
Q 003563 135 ISLRIHLASFYVEIGDYEKAAESYEQIQKLFPD---NV---DATKTGAQLFLKCGQTARSIGILEEYLKVHPSDADL-SV 207 (810)
Q Consensus 135 ~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~---~~---~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~-~~ 207 (810)
.+++...|..|.+.|+-+.|++.+.+.....-. .. -....+|..|....-..+.++..+..++...+...- +.
T Consensus 104 ~ea~~~kaeYycqigDkena~~~~~~t~~ktvs~g~kiDVvf~~iRlglfy~D~~lV~~~iekak~liE~GgDWeRrNRl 183 (393)
T KOG0687|consen 104 REAMLRKAEYYCQIGDKENALEALRKTYEKTVSLGHKIDVVFYKIRLGLFYLDHDLVTESIEKAKSLIEEGGDWERRNRL 183 (393)
T ss_pred HHHHHHHHHHHHHhccHHHHHHHHHHHHHHHhhcccchhhHHHHHHHHHhhccHHHHHHHHHHHHHHHHhCCChhhhhhH
Confidence 456667777777777777777776665543211 11 223344444444443444444444444433322110 11
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHH
Q 003563 208 IDLLVAILMENNAYEKTLQHIEHAQIV 234 (810)
Q Consensus 208 ~~~la~~~~~~g~~~~A~~~~~~~~~~ 234 (810)
-..-|...+...+|.+|-..|-.++..
T Consensus 184 KvY~Gly~msvR~Fk~Aa~Lfld~vsT 210 (393)
T KOG0687|consen 184 KVYQGLYCMSVRNFKEAADLFLDSVST 210 (393)
T ss_pred HHHHHHHHHHHHhHHHHHHHHHHHccc
Confidence 123344445555666666665555544
No 428
>PF14863 Alkyl_sulf_dimr: Alkyl sulfatase dimerisation; PDB: 2YHE_C 2CG2_A 2CG3_A 2CFU_A 2CFZ_A.
Probab=60.28 E-value=31 Score=30.27 Aligned_cols=50 Identities=20% Similarity=0.038 Sum_probs=31.5
Q ss_pred HHHHHHHHHHHHHccCHHHHHHHHHHHHhhcCCCHHHHHHHHHHHHHcCC
Q 003563 313 GYLYLKLAECYLSLKERAHAIMFFYKALDRFEDNIDARLTLASLLLEEAK 362 (810)
Q Consensus 313 ~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~ 362 (810)
.......+.-....|++.-|.+..+.++..+|++.+++...+.++.++|.
T Consensus 70 ~d~vl~~A~~~~~~gd~~wA~~L~d~l~~adp~n~~ar~l~A~al~~lg~ 119 (141)
T PF14863_consen 70 ADKVLERAQAALAAGDYQWAAELLDHLVFADPDNEEARQLKADALEQLGY 119 (141)
T ss_dssp HHHHHHHHHHHHHCT-HHHHHHHHHHHHHH-TT-HHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHHHH
Confidence 34445556666667777777777777777777777777777777766654
No 429
>PF04097 Nic96: Nup93/Nic96; InterPro: IPR007231 Nup93/Nic96 is a component of the nuclear pore complex. It is required for the correct assembly of the nuclear pore complex []. In Saccharomyces cerevisiae, Nic96 has been shown to be involved in the distribution and cellular concentration of the GTPase Gsp1 []. The structure of Nic96 has revealed a mostly alpha helical structure [].; GO: 0006810 transport, 0005643 nuclear pore; PDB: 2QX5_B 2RFO_A.
Probab=59.38 E-value=1.7e+02 Score=33.48 Aligned_cols=26 Identities=12% Similarity=-0.023 Sum_probs=15.9
Q ss_pred HHHHccCHHHHHHHHHHHHhhcCCCHH
Q 003563 322 CYLSLKERAHAIMFFYKALDRFEDNID 348 (810)
Q Consensus 322 ~~~~~g~~~~A~~~~~~al~~~p~~~~ 348 (810)
-+...|++++|++.+++. .+-|.++.
T Consensus 514 ~~~~~g~~~~AL~~i~~L-~liP~~~~ 539 (613)
T PF04097_consen 514 DLYHAGQYEQALDIIEKL-DLIPLDPS 539 (613)
T ss_dssp HHHHTT-HHHHHHHHHHT-T-S-S-HH
T ss_pred HHHHcCCHHHHHHHHHhC-CCCCCCHH
Confidence 356789999999888874 57775443
No 430
>PF09797 NatB_MDM20: N-acetyltransferase B complex (NatB) non catalytic subunit; InterPro: IPR019183 This is the non-catalytic subunit of the N-terminal acetyltransferase B complex (NatB). The NatB complex catalyses the acetylation of the amino-terminal methionine residue of all proteins beginning with Met-Asp or Met-Glu and of some proteins beginning with Met-Asn or Met-Met. In Saccharomyces cerevisiae (Baker's yeast) this subunit is called MDM20 and in Schizosaccharomyces pombe (Fission yeast) it is called Arm1. NatB acetylates the Tpm1 protein and regulates and tropomyocin-actin interactions. This subunit is required by the NatB complex for the N-terminal acetylation of Tpm1 [].
Probab=59.09 E-value=68 Score=33.82 Aligned_cols=41 Identities=20% Similarity=0.113 Sum_probs=22.3
Q ss_pred HHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCHHHHHHHHH
Q 003563 85 SAFDFYVIAAHLSPKDSALWKQLLTFAVQKGDTAQAMYYIR 125 (810)
Q Consensus 85 ~A~~~~~~a~~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~ 125 (810)
+|+..++.++..+|.+......+..+|...|-...|...|.
T Consensus 201 ~Ai~lLE~~l~~s~~n~~~~LlLvrlY~~LG~~~~A~~~~~ 241 (365)
T PF09797_consen 201 QAIALLEHALKKSPHNYQLKLLLVRLYSLLGAGSLALEHYE 241 (365)
T ss_pred HHHHHHHHHHHcCCCcHHHHHHHHHHHHHcCCHHHHHHHHH
Confidence 45555555555555555555555555555555555555554
No 431
>TIGR02710 CRISPR-associated protein, TIGR02710 family. Members of this family are found, exclusively in the vicinity of CRISPR repeats and other CRISPR-associated (cas) genes, in Methanothermobacter thermautotrophicus (Archaea), Thermus thermophilus (Deinococcus-Thermus), Chloroflexus aurantiacus (Chloroflexi), and Thermomicrobium roseum (Thermomicrobia).
Probab=59.01 E-value=2.4e+02 Score=29.66 Aligned_cols=63 Identities=17% Similarity=0.000 Sum_probs=44.7
Q ss_pred CHHHHHHHH--HHHHHHHcCCHHHHHHHHHHHHHhCCC-----ChHHHHHHHHHH--HHcCChHHHHHHHHH
Q 003563 30 SPGVTKMLG--EASLQYAYGNFEQAISLLKEVVRLSPN-----LPETYNTLGLAH--SALGNHKSAFDFYVI 92 (810)
Q Consensus 30 ~~~~~~~l~--~a~~~~~~g~~~~A~~~~~~~l~~~p~-----~~~~~~~l~~~~--~~~g~~~~A~~~~~~ 92 (810)
|-++..... ++..++..++|..|...|.++.+..+. ....+..+..+| ...-++++|.+.+++
T Consensus 125 P~~v~~~~e~~~~r~l~n~~dy~aA~~~~~~L~~r~l~~~~~~~~~~~~~l~~~y~~WD~fd~~~A~~~L~~ 196 (380)
T TIGR02710 125 PYNVEGNTEQGYARRAINAFDYLFAHARLETLLRRLLSAVNHTFYEAMIKLTRAYLHWDRFEHEEALDYLND 196 (380)
T ss_pred HHHHHHHHHHHHHHHHHHhcChHHHHHHHHHHHhcccChhhhhHHHHHHHHHHHHHHHHccCHHHHHHHHhh
Confidence 334444443 666899999999999999999987542 123444554444 567788899999986
No 432
>PF12739 TRAPPC-Trs85: ER-Golgi trafficking TRAPP I complex 85 kDa subunit; InterPro: IPR024420 This entry represents Trs85, a subunit of the TRAPP III complex []. Trs85 is a multimeric guanine nucleotide-exchange factor for Ypt1, required for membrane expansion during autophagy and the CVT pathway. It directs Ypt1 to the phagophore assembly site [, , , ].
Probab=58.95 E-value=2.6e+02 Score=30.08 Aligned_cols=28 Identities=21% Similarity=0.381 Sum_probs=22.4
Q ss_pred HHHHHHHHHccCHHHHHHHHHHHHhhcC
Q 003563 317 LKLAECYLSLKERAHAIMFFYKALDRFE 344 (810)
Q Consensus 317 ~~la~~~~~~g~~~~A~~~~~~al~~~p 344 (810)
..-|.-|.+.|+...|..+|.+++....
T Consensus 374 vLAg~~~~~~~~~~~a~rcy~~a~~vY~ 401 (414)
T PF12739_consen 374 VLAGHRYSKAGQKKHALRCYKQALQVYE 401 (414)
T ss_pred HHHHHHHHHCCCHHHHHHHHHHHHHHhC
Confidence 3446778889999999999999987654
No 433
>KOG0687 consensus 26S proteasome regulatory complex, subunit RPN7/PSMD6 [Posttranslational modification, protein turnover, chaperones]
Probab=58.47 E-value=2.1e+02 Score=28.93 Aligned_cols=104 Identities=16% Similarity=0.133 Sum_probs=58.4
Q ss_pred HHHHHHHHHHHHHcCChHHHHHHHHHHHhhCCCC---CC-hHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhcCCCCCcHH
Q 003563 169 VDATKTGAQLFLKCGQTARSIGILEEYLKVHPSD---AD-LSVIDLLVAILMENNAYEKTLQHIEHAQIVRFSGKELPLK 244 (810)
Q Consensus 169 ~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~---~~-~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~ 244 (810)
.+++...|..|.+.|+-+.|.+.+.+..+..-.- .+ .-....+|..|....-..+-++..+..++. +.+-.....
T Consensus 104 ~ea~~~kaeYycqigDkena~~~~~~t~~ktvs~g~kiDVvf~~iRlglfy~D~~lV~~~iekak~liE~-GgDWeRrNR 182 (393)
T KOG0687|consen 104 REAMLRKAEYYCQIGDKENALEALRKTYEKTVSLGHKIDVVFYKIRLGLFYLDHDLVTESIEKAKSLIEE-GGDWERRNR 182 (393)
T ss_pred HHHHHHHHHHHHHhccHHHHHHHHHHHHHHHhhcccchhhHHHHHHHHHhhccHHHHHHHHHHHHHHHHh-CCChhhhhh
Confidence 4678888889999999999988888776643221 11 011223454544433333333333333333 211122223
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHhhccC
Q 003563 245 LKVKAGICYLRLGNMEKAEILFADLQWKN 273 (810)
Q Consensus 245 ~~~~la~~~~~~g~~~~A~~~~~~~~~~~ 273 (810)
.....|.......++.+|-.+|-..+...
T Consensus 183 lKvY~Gly~msvR~Fk~Aa~Lfld~vsTF 211 (393)
T KOG0687|consen 183 LKVYQGLYCMSVRNFKEAADLFLDSVSTF 211 (393)
T ss_pred HHHHHHHHHHHHHhHHHHHHHHHHHcccc
Confidence 44455666677777777777777766543
No 434
>KOG2114 consensus Vacuolar assembly/sorting protein PEP5/VPS11 [Intracellular trafficking, secretion, and vesicular transport]
Probab=58.36 E-value=3.5e+02 Score=31.36 Aligned_cols=56 Identities=21% Similarity=0.269 Sum_probs=41.1
Q ss_pred HHHHHHcCCHHHHHHHHHHHHHhCCC-ChHHHHHHHHHHHHcCChHHHHHHHHHHHhc
Q 003563 40 ASLQYAYGNFEQAISLLKEVVRLSPN-LPETYNTLGLAHSALGNHKSAFDFYVIAAHL 96 (810)
Q Consensus 40 a~~~~~~g~~~~A~~~~~~~l~~~p~-~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~ 96 (810)
-..++++.-|+-|+.+.+.- ..+++ -.+.+...|..++..|++++|...|-+.+..
T Consensus 341 L~iL~kK~ly~~Ai~LAk~~-~~d~d~~~~i~~kYgd~Ly~Kgdf~~A~~qYI~tI~~ 397 (933)
T KOG2114|consen 341 LDILFKKNLYKVAINLAKSQ-HLDEDTLAEIHRKYGDYLYGKGDFDEATDQYIETIGF 397 (933)
T ss_pred HHHHHHhhhHHHHHHHHHhc-CCCHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHccc
Confidence 34567788888888877653 22222 2456777888999999999999999888754
No 435
>COG5187 RPN7 26S proteasome regulatory complex component, contains PCI domain [Posttranslational modification, protein turnover, chaperones]
Probab=57.11 E-value=2.1e+02 Score=28.39 Aligned_cols=101 Identities=8% Similarity=0.037 Sum_probs=68.9
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC---CHH---HHHHHHHHHHHcCChHHHHHHHHHHHhhCCCCCCh-HH
Q 003563 135 ISLRIHLASFYVEIGDYEKAAESYEQIQKLFPD---NVD---ATKTGAQLFLKCGQTARSIGILEEYLKVHPSDADL-SV 207 (810)
Q Consensus 135 ~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~---~~~---~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~-~~ 207 (810)
.+++.++|..|.+.++.+.+.+...+.+...-. ..+ ....+|.+|..+.-.++.++.....++...+...- ..
T Consensus 115 ~ea~~n~aeyY~qi~D~~ng~~~~~~~~~~a~stg~KiDv~l~kiRlg~~y~d~~vV~e~lE~~~~~iEkGgDWeRrNRy 194 (412)
T COG5187 115 SEADRNIAEYYCQIMDIQNGFEWMRRLMRDAMSTGLKIDVFLCKIRLGLIYGDRKVVEESLEVADDIIEKGGDWERRNRY 194 (412)
T ss_pred HHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHhcccchhhHHHHHHHHHhhccHHHHHHHHHHHHHHHHhCCCHHhhhhH
Confidence 567889999999999999999988887764322 122 33456666766666677777777777765543221 12
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHHh
Q 003563 208 IDLLVAILMENNAYEKTLQHIEHAQIVR 235 (810)
Q Consensus 208 ~~~la~~~~~~g~~~~A~~~~~~~~~~~ 235 (810)
-...|...+...++.+|-..+...+..+
T Consensus 195 K~Y~Gi~~m~~RnFkeAa~Ll~d~l~tF 222 (412)
T COG5187 195 KVYKGIFKMMRRNFKEAAILLSDILPTF 222 (412)
T ss_pred HHHHHHHHHHHHhhHHHHHHHHHHhccc
Confidence 2245666677788888888888877654
No 436
>KOG1920 consensus IkappaB kinase complex, IKAP component [Transcription]
Probab=56.75 E-value=4.4e+02 Score=32.00 Aligned_cols=24 Identities=13% Similarity=0.058 Sum_probs=11.4
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHH
Q 003563 208 IDLLVAILMENNAYEKTLQHIEHA 231 (810)
Q Consensus 208 ~~~la~~~~~~g~~~~A~~~~~~~ 231 (810)
+...|.-+...+.+++|.-.|+.+
T Consensus 942 ~~~ya~hL~~~~~~~~Aal~Ye~~ 965 (1265)
T KOG1920|consen 942 YEAYADHLREELMSDEAALMYERC 965 (1265)
T ss_pred HHHHHHHHHHhccccHHHHHHHHh
Confidence 334444444455555554444443
No 437
>KOG2063 consensus Vacuolar assembly/sorting proteins VPS39/VAM6/VPS3 [Intracellular trafficking, secretion, and vesicular transport]
Probab=56.59 E-value=4e+02 Score=31.54 Aligned_cols=28 Identities=25% Similarity=0.209 Sum_probs=22.6
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHhh
Q 003563 243 LKLKVKAGICYLRLGNMEKAEILFADLQ 270 (810)
Q Consensus 243 ~~~~~~la~~~~~~g~~~~A~~~~~~~~ 270 (810)
...+...+.++.++|+.++|+..+-..+
T Consensus 684 ~~l~ee~aill~rl~khe~aL~Iyv~~L 711 (877)
T KOG2063|consen 684 DELYEERAILLGRLGKHEEALHIYVHEL 711 (877)
T ss_pred hhHHHHHHHHHhhhhhHHHHHHHHHHHh
Confidence 4567778888888999999998888765
No 438
>PF01851 PC_rep: Proteasome/cyclosome repeat; InterPro: IPR002015 A weakly conserved repeat module of unknown function, which occurs in two regulatory subunits of the 26S-proteasome and in one subunit of the APC-complex (cyclosome) [].; PDB: 4ADY_A.
Probab=56.36 E-value=14 Score=23.24 Aligned_cols=26 Identities=38% Similarity=0.583 Sum_probs=19.8
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHhhcc
Q 003563 783 AAYNLHLIYKNSGAVDLARQLLKDYCT 809 (810)
Q Consensus 783 aa~nl~~iy~~~g~~~~A~~~~~~~~~ 809 (810)
|++-|++||..+|| +.+..++..|+.
T Consensus 2 A~lgLGl~~aGs~~-~~~~~~L~~~l~ 27 (35)
T PF01851_consen 2 AILGLGLIYAGSGN-EEVLDLLRPYLS 27 (35)
T ss_dssp HHHHHHHHTTTT---HHHHHHHHHHHC
T ss_pred cHHHHHHHHcCCCC-HHHHHHHHHHHH
Confidence 67899999999998 578888887763
No 439
>PF01535 PPR: PPR repeat; InterPro: IPR002885 This entry represents the PPR repeat. Pentatricopeptide repeat (PPR) proteins are characterised by tandem repeats of a degenerate 35 amino acid motif []. Most of PPR proteins have roles in mitochondria or plastid []. PPR repeats were discovered while screening Arabidopsis proteins for those predicted to be targeted to mitochondria or chloroplast [, ]. Some of these proteins have been shown to play a role in post-transcriptional processes within organelles and they are thought to be sequence-specific RNA-binding proteins [, , ]. Plant genomes have between one hundred to five hundred PPR genes per genome whereas non-plant genomes encode two to six PPR proteins. Although no PPR structures are yet known, the motif is predicted to fold into a helix-turn-helix structure similar to those found in the tetratricopeptide repeat (TPR) family (see PDOC50005 from PROSITEDOC) []. The plant PPR protein family has been divided in two subfamilies on the basis of their motif content and organisation [, ]. Examples of PPR repeat-containing proteins include PET309 P32522 from SWISSPROT, which may be involved in RNA stabilisation [], and crp1, which is involved in RNA processing []. The repeat is associated with a predicted plant protein O49549 from SWISSPROT that has a domain organisation similar to the human BRCA1 protein.
Probab=56.22 E-value=20 Score=21.14 Aligned_cols=21 Identities=14% Similarity=0.178 Sum_probs=8.6
Q ss_pred HHHHHHHcCCHHHHHHHHHHH
Q 003563 107 LLTFAVQKGDTAQAMYYIRQA 127 (810)
Q Consensus 107 la~~~~~~g~~~~A~~~~~~a 127 (810)
+-..|.+.|++++|...+++.
T Consensus 6 li~~~~~~~~~~~a~~~~~~M 26 (31)
T PF01535_consen 6 LISGYCKMGQFEEALEVFDEM 26 (31)
T ss_pred HHHHHHccchHHHHHHHHHHH
Confidence 333344444444444444433
No 440
>PF01535 PPR: PPR repeat; InterPro: IPR002885 This entry represents the PPR repeat. Pentatricopeptide repeat (PPR) proteins are characterised by tandem repeats of a degenerate 35 amino acid motif []. Most of PPR proteins have roles in mitochondria or plastid []. PPR repeats were discovered while screening Arabidopsis proteins for those predicted to be targeted to mitochondria or chloroplast [, ]. Some of these proteins have been shown to play a role in post-transcriptional processes within organelles and they are thought to be sequence-specific RNA-binding proteins [, , ]. Plant genomes have between one hundred to five hundred PPR genes per genome whereas non-plant genomes encode two to six PPR proteins. Although no PPR structures are yet known, the motif is predicted to fold into a helix-turn-helix structure similar to those found in the tetratricopeptide repeat (TPR) family (see PDOC50005 from PROSITEDOC) []. The plant PPR protein family has been divided in two subfamilies on the basis of their motif content and organisation [, ]. Examples of PPR repeat-containing proteins include PET309 P32522 from SWISSPROT, which may be involved in RNA stabilisation [], and crp1, which is involved in RNA processing []. The repeat is associated with a predicted plant protein O49549 from SWISSPROT that has a domain organisation similar to the human BRCA1 protein.
Probab=55.93 E-value=20 Score=21.14 Aligned_cols=25 Identities=12% Similarity=0.275 Sum_probs=14.7
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHH
Q 003563 208 IDLLVAILMENNAYEKTLQHIEHAQ 232 (810)
Q Consensus 208 ~~~la~~~~~~g~~~~A~~~~~~~~ 232 (810)
|+.+...|.+.|++++|...+++..
T Consensus 3 y~~li~~~~~~~~~~~a~~~~~~M~ 27 (31)
T PF01535_consen 3 YNSLISGYCKMGQFEEALEVFDEMR 27 (31)
T ss_pred HHHHHHHHHccchHHHHHHHHHHHh
Confidence 4455556666666666666665544
No 441
>PF13226 DUF4034: Domain of unknown function (DUF4034)
Probab=55.86 E-value=2e+02 Score=28.75 Aligned_cols=130 Identities=12% Similarity=0.039 Sum_probs=76.8
Q ss_pred HHHHHHHcCCHHHHHHHHHHHHHhCCC--ChHHHHHHHHHHH---HcCCh----HHHHHHHHHHHhcCCCCHHHHHHHHH
Q 003563 39 EASLQYAYGNFEQAISLLKEVVRLSPN--LPETYNTLGLAHS---ALGNH----KSAFDFYVIAAHLSPKDSALWKQLLT 109 (810)
Q Consensus 39 ~a~~~~~~g~~~~A~~~~~~~l~~~p~--~~~~~~~l~~~~~---~~g~~----~~A~~~~~~a~~~~p~~~~~~~~la~ 109 (810)
....++..++|++=...+.+......+ ..+..+..+.... ..... ..-...++.=++..|++..++..+|.
T Consensus 6 ~ir~LL~~~~f~eLd~~l~~~~~~~~~s~~~e~~Y~~~~~~~~l~D~~~~~~~~~~~~~~LkaWv~a~P~Sy~A~La~g~ 85 (277)
T PF13226_consen 6 DIRELLQARDFAELDALLARLLQAWLQSRDGEQRYFRAWMSSTLFDMDSVVDAWQARLAVLKAWVAACPKSYHAHLAMGM 85 (277)
T ss_pred HHHHHHHhCcHHHHHHHHHHHHHhhhhccCccchHHHHHhhccccCcchhhhHHHhHHHHHHHHHHHCCCChHHHHHHHH
Confidence 445678889999988888888754322 1111122222221 11111 12455556666778999988888877
Q ss_pred HHHHcCCHHHHHHHHHHHHHcCC------CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcC
Q 003563 110 FAVQKGDTAQAMYYIRQAIRAEP------KDISLRIHLASFYVEIGDYEKAAESYEQIQKLFPDNVDATKTGAQLFLKCG 183 (810)
Q Consensus 110 ~~~~~g~~~~A~~~~~~al~~~p------~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g 183 (810)
.+... +...-. -...-+..... -.+.|...+.+++.++|....+...+..+-...|
T Consensus 86 ~~~~~------------Aw~~RG~~~A~~V~~~~W~~~~~------~~d~A~~~ll~A~~l~pr~~~A~~~m~~~s~~fg 147 (277)
T PF13226_consen 86 YWVHR------------AWDIRGSGYASTVTEAQWLGAHQ------ACDQAVAALLKAIELSPRPVAAAIGMINISAYFG 147 (277)
T ss_pred HHHHH------------HHHHHccchhcccCHHHHHHHHH------HHHHHHHHHHHHHhcCCCchHHHHHHHHHHhhcC
Confidence 76542 222110 11112221111 2467888888888888888888888888877788
Q ss_pred ChH
Q 003563 184 QTA 186 (810)
Q Consensus 184 ~~~ 186 (810)
.++
T Consensus 148 eP~ 150 (277)
T PF13226_consen 148 EPD 150 (277)
T ss_pred Cch
Confidence 776
No 442
>PF02064 MAS20: MAS20 protein import receptor; InterPro: IPR002056 Virtually all mitochondrial precursors are imported via the same mechanism []: precursors first bind to receptors on the mitochondrial surface, then insert into the translocation channel in the outer membrane. Many outer-membrane proteins participate in the early stages of import, four of which (MAS20, MAS22, MAS37 and MAS70) are components of the receptor. MAS20, which forms a subcomplex with MAS22, seems to interact with most or all mitochondrial precursors, suggesting that the protein binds directly to mitochondrial targeting sequences. The MAS37 and MAS70 components also form a subcomplex, the two subcomplexes possibly binding via their trans- membrane (TM) regions - the TM region of MAS70 promotes oligomerisation of attatched protein domains and shares sequence similarity with the TM region of MAS20 []. MAS20 is also known as TOM20.; GO: 0006605 protein targeting, 0006886 intracellular protein transport, 0005742 mitochondrial outer membrane translocase complex; PDB: 3AX3_A 3AWR_B 2V1S_A 3AX5_C 3AX2_C 1OM2_A 2V1T_B.
Probab=55.86 E-value=30 Score=29.33 Aligned_cols=44 Identities=23% Similarity=0.326 Sum_probs=33.6
Q ss_pred hhHHHHHHHHhcCCCCCchhhhcchhhhccchHHHHHHHHHHHhhCCCChHHHHHH
Q 003563 629 HSKFIRYLRAKYKDCVPPIIISGHQFTMASHHQDAARCYLEAYKLLPENPLINLCV 684 (810)
Q Consensus 629 ~~~~~~~~~~~~p~~~~~~~~~g~~~~~~~~~~~Ai~~y~~a~~~~p~~p~~~l~l 684 (810)
-++||++.+.. |..+...|++.+|+.+|-+|+...|+ |.-.+.+
T Consensus 59 ~e~~Fl~qV~l-----------GE~L~~~G~~~~aa~hf~nAl~V~~q-P~~LL~i 102 (121)
T PF02064_consen 59 MERFFLQQVQL-----------GEQLLAQGDYEEAAEHFYNALKVCPQ-PAELLQI 102 (121)
T ss_dssp HHHHHHHHHHH-----------HHHHHHTT-HHHHHHHHHHHHHTSSS-HHHHHHH
T ss_pred HHHHHHHHHHH-----------HHHHHhCCCHHHHHHHHHHHHHhCCC-HHHHHHH
Confidence 36677766653 88888889999999999999999995 6544443
No 443
>TIGR03362 VI_chp_7 type VI secretion-associated protein, VC_A0119 family. This protein family is one of two related families in type VI secretion systems that contain an ImpA-related N-terminal domain (pfam06812).
Probab=54.97 E-value=2.5e+02 Score=28.58 Aligned_cols=162 Identities=12% Similarity=0.025 Sum_probs=98.7
Q ss_pred CCCCHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHcCChHHHHHHHHHHHh----cCCCCHH
Q 003563 27 NKLSPGVTKMLGEASLQYAYGNFEQAISLLKEVVRLSPNLPETYNTLGLAHSALGNHKSAFDFYVIAAH----LSPKDSA 102 (810)
Q Consensus 27 ~~~~~~~~~~l~~a~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~----~~p~~~~ 102 (810)
...+.+....+.. .+..+++.+.++.+++.+..+|--.+.++..+.+..+.| ++.+.......+. .-|.-..
T Consensus 96 ~~p~ad~~~~~~~---~~~~~~~~~Ll~~~E~sl~~~pfWLDgq~~~~qal~~lG-~~~~a~aI~~el~~fL~RlP~L~~ 171 (301)
T TIGR03362 96 APPPADRVADYQE---LLAQADWAALLQRVEQSLSLAPFWLDGQRLSAQALERLG-YAAVAQAIRDELAAFLERLPGLLE 171 (301)
T ss_pred CCCCHHHHHHHHH---HHhCCCHHHHHHHHHHHHHhCchhhHHHHHHHHHHHHCC-CHHHHHHHHHHHHHHHHhCcChhh
Confidence 3444454444433 457888999999999999999988899999999999999 4555555443332 2232111
Q ss_pred HHHHHHHHHHHcCCH---HHHHHHHHHHHH-----------cCC--CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCC
Q 003563 103 LWKQLLTFAVQKGDT---AQAMYYIRQAIR-----------AEP--KDISLRIHLASFYVEIGDYEKAAESYEQIQKLFP 166 (810)
Q Consensus 103 ~~~~la~~~~~~g~~---~~A~~~~~~al~-----------~~p--~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p 166 (810)
+.+.-|-. ++....+..... ..+ .+......-+......|..+.|+..++..+...+
T Consensus 172 -------L~F~DGtPFad~~T~~WL~~~~~~~~~~~~~~~~~~~~~~~~~~~~~eA~~l~~~~gl~~Al~~L~~~~~~~~ 244 (301)
T TIGR03362 172 -------LKFSDGTPFADDETRAWLAQHATRSNAASVAPVAEVGEESDWEELREEARALAAEGGLEAALQRLQQRLAQAR 244 (301)
T ss_pred -------cccCCCCCCCCHHHHHHHHhcccccccccccccccCcccccHHHHHHHHHHHHHcCCHHHHHHHHHhhcccCC
Confidence 11111110 111111111000 001 1122233446777888999999999988655433
Q ss_pred CC---HHHHHHHHHHHHHcCChHHHHHHHHHHHhhC
Q 003563 167 DN---VDATKTGAQLFLKCGQTARSIGILEEYLKVH 199 (810)
Q Consensus 167 ~~---~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~ 199 (810)
+. ......++.++...|..+-|...|+.+.+..
T Consensus 245 s~R~rf~~rL~~A~l~~~~g~~~lA~~ll~~L~~~~ 280 (301)
T TIGR03362 245 EPRERFHWRLLLARLLEQAGKAELAQQLYAALDQQI 280 (301)
T ss_pred ChHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHH
Confidence 32 3445677899999999999999998887653
No 444
>smart00101 14_3_3 14-3-3 homologues. 14-3-3 homologues mediates signal transduction by binding to phosphoserine-containing proteins. They are involved in growth factor signalling and also interact with MEK kinases.
Probab=54.01 E-value=2.2e+02 Score=27.80 Aligned_cols=50 Identities=22% Similarity=0.177 Sum_probs=28.3
Q ss_pred HHHHHHHHHHHHHHh----cCCCCCcHHHHHHHHHHHH-hcCCHHHHHHHHHHhh
Q 003563 221 YEKTLQHIEHAQIVR----FSGKELPLKLKVKAGICYL-RLGNMEKAEILFADLQ 270 (810)
Q Consensus 221 ~~~A~~~~~~~~~~~----~~~~~~~~~~~~~la~~~~-~~g~~~~A~~~~~~~~ 270 (810)
.++|...|+.+.+.. ++.+|....+..+.+..++ -.++.++|..+.+++.
T Consensus 144 ~~~a~~aY~~A~e~a~~~L~pt~PirLgLaLN~SVF~yEI~~~~~~A~~lAk~af 198 (244)
T smart00101 144 AENTLVAYKSAQDIALAELPPTHPIRLGLALNFSVFYYEILNSPDRACNLAKQAF 198 (244)
T ss_pred HHHHHHHHHHHHHHHHccCCCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 346777777776652 2333333344444444444 4577777777666654
No 445
>KOG0546 consensus HSP90 co-chaperone CPR7/Cyclophilin [Posttranslational modification, protein turnover, chaperones]
Probab=53.74 E-value=12 Score=37.86 Aligned_cols=70 Identities=10% Similarity=-0.057 Sum_probs=39.2
Q ss_pred HHHHHHHHHcCChHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHHHHHH
Q 003563 71 NTLGLAHSALGNHKSAFDFYVIAAHLSPKDSALWKQLLTFAVQKGDTAQAMYYIRQAIRAEPKDISLRIH 140 (810)
Q Consensus 71 ~~l~~~~~~~g~~~~A~~~~~~a~~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~ 140 (810)
..++.+-...+.+..|+..-..++..++....+++..+..+....++++|+..+..+....|.+......
T Consensus 279 ~n~~~~~lk~~~~~~a~~~~~~~~~~~~s~tka~~Rr~~~~~~~~~~~~a~~~~~~a~~~~p~d~~i~~~ 348 (372)
T KOG0546|consen 279 RNLAAVGLKVKGRGGARFRTNEALRDERSKTKAHYRRGQAYKLLKNYDEALEDLKKAKQKAPNDKAIEEE 348 (372)
T ss_pred cchHHhcccccCCCcceeccccccccChhhCcHHHHHHhHHHhhhchhhhHHHHHHhhccCcchHHHHHH
Confidence 3355555555555555555555555555555555566666666666666666666665555555544333
No 446
>PF13812 PPR_3: Pentatricopeptide repeat domain
Probab=52.79 E-value=15 Score=22.41 Aligned_cols=29 Identities=10% Similarity=0.065 Sum_probs=24.7
Q ss_pred HHHHHHHHHHhcCCchhHHhhhhhhhhhh
Q 003563 395 IIMKLCHIYRAKGMPEDFVDAIFPLVCES 423 (810)
Q Consensus 395 ~~~~la~~~~~~g~~~~A~~~~~~~l~~~ 423 (810)
.+..+..++.+.|+++.|.+.+..+.+.+
T Consensus 3 ty~~ll~a~~~~g~~~~a~~~~~~M~~~g 31 (34)
T PF13812_consen 3 TYNALLRACAKAGDPDAALQLFDEMKEQG 31 (34)
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHHhC
Confidence 45678889999999999999999987654
No 447
>TIGR00756 PPR pentatricopeptide repeat domain (PPR motif). This family has a similar consensus to the TPR domain (tetratricopeptide), pfam pfam00515, a 33-residue repeat. It is predicted to form a pair of antiparallel helices similar to that of TPR.
Probab=52.08 E-value=36 Score=20.49 Aligned_cols=23 Identities=22% Similarity=0.338 Sum_probs=10.7
Q ss_pred HHHHHHHHcCCcHHHHHHHHHHH
Q 003563 283 EVADTLMSLGHSNSALKYYHFLE 305 (810)
Q Consensus 283 ~la~~~~~~~~~~~A~~~~~~~~ 305 (810)
.+...+.+.|++++|.++|..+.
T Consensus 5 ~li~~~~~~~~~~~a~~~~~~M~ 27 (35)
T TIGR00756 5 TLIDGLCKAGRVEEALELFKEML 27 (35)
T ss_pred HHHHHHHHCCCHHHHHHHHHHHH
Confidence 34444444444444444444443
No 448
>KOG0292 consensus Vesicle coat complex COPI, alpha subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=51.89 E-value=4.5e+02 Score=30.72 Aligned_cols=105 Identities=14% Similarity=0.136 Sum_probs=58.7
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHhhccCC-------c--hhHhHHHHHHHHHH------------HcCCcHHHHH---HH
Q 003563 246 KVKAGICYLRLGNMEKAEILFADLQWKNA-------I--DHADLITEVADTLM------------SLGHSNSALK---YY 301 (810)
Q Consensus 246 ~~~la~~~~~~g~~~~A~~~~~~~~~~~~-------~--~~~~~~~~la~~~~------------~~~~~~~A~~---~~ 301 (810)
....|.-....|++.+|++.|..++-.-| . ...+-+..++.-|. ..+..+.+.+ +|
T Consensus 994 kl~~gy~ltt~gKf~eAie~Frsii~~i~l~vvd~~~e~aea~~li~i~~eYi~gL~~E~~Rr~l~~~~~~~~~ElAaYF 1073 (1202)
T KOG0292|consen 994 KLQKGYKLTTEGKFGEAIEKFRSIIYSIPLLVVDSKEEEAEADELIKICREYIVGLSVELERRKLKKPNLEQQLELAAYF 1073 (1202)
T ss_pred HHHHHHhhhccCcHHHHHHHHHHHHhheeEEEecchhhHHHHHHHHHHHHHHHhhheeeeeecccCCchHHHHHHHHHHh
Confidence 34456666778999999999998654322 1 11222333333331 1122333311 22
Q ss_pred HHHHhccCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHhhcCCCHHHHH
Q 003563 302 HFLETNAGTDNGYLYLKLAECYLSLKERAHAIMFFYKALDRFEDNIDARL 351 (810)
Q Consensus 302 ~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~ 351 (810)
..+ .+.......++...-..+++++++..|.....+.+++.|..+.+..
T Consensus 1074 t~~-~Lqp~H~ilalrtA~n~ffK~kN~ktAs~fa~rLlel~~~~~~A~q 1122 (1202)
T KOG0292|consen 1074 THC-KLQPMHRILALRTAMNVFFKLKNLKTAAEFARRLLELAPSPPVAEQ 1122 (1202)
T ss_pred hcC-CCCcHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHhhCCCChHHHH
Confidence 111 1212223334444456778899999999999999999887765543
No 449
>PF04348 LppC: LppC putative lipoprotein; InterPro: IPR007443 This entry includes several bacterial outer membrane antigens, whose molecular function is unknown.; PDB: 3CKM_A.
Probab=51.47 E-value=4.9 Score=44.54 Aligned_cols=56 Identities=18% Similarity=0.226 Sum_probs=0.0
Q ss_pred HHHHHHHHHcCChHHHHHHHHHHH--hhCCCCCChHHHHHHHHHHHHcCCHHHHHHHHH
Q 003563 173 KTGAQLFLKCGQTARSIGILEEYL--KVHPSDADLSVIDLLVAILMENNAYEKTLQHIE 229 (810)
Q Consensus 173 ~~la~~~~~~g~~~~A~~~~~~~l--~~~p~~~~~~~~~~la~~~~~~g~~~~A~~~~~ 229 (810)
..-+..++..|++..|...+..+- .+.|... .......+.+....|++++|+..+.
T Consensus 28 L~Aa~a~l~~g~~~~A~~ll~~l~~~~L~~~q~-~~~~Ll~A~lal~~~~~~~Al~~L~ 85 (536)
T PF04348_consen 28 LLAARALLQEGDWAQAQALLNQLDPQQLSPSQQ-ARYQLLRARLALAQGDPEQALSLLN 85 (536)
T ss_dssp -----------------------------------------------------------
T ss_pred HHHHHHHHhCCCHHHHHHHHHhcccccCChHHH-HHHHHHHHHHHHhcCCHHHHHHHhc
Confidence 333445555555555555554443 1122111 1122334444444555555555444
No 450
>PF07163 Pex26: Pex26 protein; InterPro: IPR010797 This family consists of Pex26 and related mammalian proteins. Pex26 is a type II peroxisomal membrane protein that recruits Pex6-Pex1 complexes to peroxisomes []. Mutations in Pex26 can lead to human disorders [].; GO: 0032403 protein complex binding, 0045046 protein import into peroxisome membrane, 0005779 integral to peroxisomal membrane
Probab=50.95 E-value=2.6e+02 Score=27.72 Aligned_cols=137 Identities=15% Similarity=0.053 Sum_probs=75.6
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHhcCCC--CCcHHHHHHHHHHHHhcCCHHHHHHHHHHhhccCCchhHhHHHHH
Q 003563 207 VIDLLVAILMENNAYEKTLQHIEHAQIVRFSGK--ELPLKLKVKAGICYLRLGNMEKAEILFADLQWKNAIDHADLITEV 284 (810)
Q Consensus 207 ~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~--~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l 284 (810)
.+..-++.+.-..||..|+...++.++....+. ..+.. .. .+-.......=
T Consensus 37 lLe~Aad~LvV~rdF~aal~tCerglqsL~~~a~~ee~~~-------------~~--------------~evK~sLcvvG 89 (309)
T PF07163_consen 37 LLEEAADLLVVHRDFQAALETCERGLQSLASDADAEEPAG-------------SS--------------LEVKCSLCVVG 89 (309)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccccccccc-------------ch--------------hhhhhhhhhhh
Confidence 344556677777888999999888887642110 00000 00 00000111112
Q ss_pred HHHHHHcCCcHHHHHHHHHHHhccCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHhhcCCCH--HHHHHHHHHH-----
Q 003563 285 ADTLMSLGHSNSALKYYHFLETNAGTDNGYLYLKLAECYLSLKERAHAIMFFYKALDRFEDNI--DARLTLASLL----- 357 (810)
Q Consensus 285 a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~--~~~~~la~~~----- 357 (810)
..++.+.+++.+++...-+..+....--+.+.-.-...|.+.|++....+.-..-+. +|+|. .-+..++++|
T Consensus 90 IQALAEmnrWreVLsWvlqyYq~pEklPpkIleLCILLysKv~Ep~amlev~~~WL~-~p~Nq~lp~y~~vaELyLl~VL 168 (309)
T PF07163_consen 90 IQALAEMNRWREVLSWVLQYYQVPEKLPPKILELCILLYSKVQEPAAMLEVASAWLQ-DPSNQSLPEYGTVAELYLLHVL 168 (309)
T ss_pred HHHHHHHhhHHHHHHHHHHHhcCcccCCHHHHHHHHHHHHHhcCHHHHHHHHHHHHh-CcccCCchhhHHHHHHHHHHHH
Confidence 345566777777777665555432222445555555567777877777666655554 45441 1244444444
Q ss_pred HHcCCHHHHHHhcC
Q 003563 358 LEEAKEEEAITLLS 371 (810)
Q Consensus 358 ~~~g~~~~A~~~~~ 371 (810)
.=+|.+++|.++..
T Consensus 169 lPLG~~~eAeelv~ 182 (309)
T PF07163_consen 169 LPLGHFSEAEELVV 182 (309)
T ss_pred hccccHHHHHHHHh
Confidence 45799999999984
No 451
>PF11846 DUF3366: Domain of unknown function (DUF3366); InterPro: IPR021797 This domain is functionally uncharacterised. This domain is found in bacteria. This presumed domain is about 200 amino acids in length.
Probab=50.52 E-value=2.2e+02 Score=26.63 Aligned_cols=47 Identities=21% Similarity=0.362 Sum_probs=32.1
Q ss_pred HHHHHHHHHHHcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCC
Q 003563 119 QAMYYIRQAIRAEPKDISLRIHLASFYVEIGDYEKAAESYEQIQKLFP 166 (810)
Q Consensus 119 ~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p 166 (810)
..++..++.++..| ++..+..++.++...|+.++|.....++....|
T Consensus 129 ~~~~~a~~~l~~~P-~~~~~~~~a~~l~~~G~~~eA~~~~~~~~~lyP 175 (193)
T PF11846_consen 129 AYIEWAERLLRRRP-DPNVYQRYALALALLGDPEEARQWLARARRLYP 175 (193)
T ss_pred HHHHHHHHHHHhCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCC
Confidence 34455555555556 566667777777777777777777777777777
No 452
>TIGR00756 PPR pentatricopeptide repeat domain (PPR motif). This family has a similar consensus to the TPR domain (tetratricopeptide), pfam pfam00515, a 33-residue repeat. It is predicted to form a pair of antiparallel helices similar to that of TPR.
Probab=50.11 E-value=34 Score=20.59 Aligned_cols=26 Identities=15% Similarity=0.156 Sum_probs=17.0
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHH
Q 003563 208 IDLLVAILMENNAYEKTLQHIEHAQI 233 (810)
Q Consensus 208 ~~~la~~~~~~g~~~~A~~~~~~~~~ 233 (810)
|+.+...|.+.|++++|.+.|.+...
T Consensus 3 ~n~li~~~~~~~~~~~a~~~~~~M~~ 28 (35)
T TIGR00756 3 YNTLIDGLCKAGRVEEALELFKEMLE 28 (35)
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHH
Confidence 45566666677777777777766554
No 453
>COG5536 BET4 Protein prenyltransferase, alpha subunit [Posttranslational modification, protein turnover, chaperones]
Probab=49.94 E-value=1.1e+02 Score=30.16 Aligned_cols=127 Identities=13% Similarity=0.070 Sum_probs=89.6
Q ss_pred HHHHHHHHHHHHhCCCChHHHHHHHHHHHHc--CChHHHHHHHHHHHhcCCCCHHHHHHHHHHH------HHcCCHHHHH
Q 003563 50 EQAISLLKEVVRLSPNLPETYNTLGLAHSAL--GNHKSAFDFYVIAAHLSPKDSALWKQLLTFA------VQKGDTAQAM 121 (810)
Q Consensus 50 ~~A~~~~~~~l~~~p~~~~~~~~l~~~~~~~--g~~~~A~~~~~~a~~~~p~~~~~~~~la~~~------~~~g~~~~A~ 121 (810)
+.-+..+..+++.+|++-..|...-.++... ..+..-....++.++.+|.+-..|...-.+. ....++..-.
T Consensus 91 dneld~~~~~lk~~PK~YqiW~HR~~~Le~~p~~~~~rEl~itkklld~DsrNyH~W~YR~~vl~~ie~~~N~S~~k~e~ 170 (328)
T COG5536 91 DNELDFLDEALKDNPKNYQIWHHRQWMLELFPKPSWGRELFITKKLLDSDSRNYHVWSYRRWVLRTIEDLFNFSDLKHEL 170 (328)
T ss_pred hcHHHHHHHHHhcCCchhhhhHHHHHHHHhCCCcccchhHHHHHHHhcccccccceeeeEeeeeecchhhccchhHHHHH
Confidence 4456678888889999999998888887665 5677778888999999999887775432222 4444455556
Q ss_pred HHHHHHHHcCCCCHHHHHHH---HHHHHHcCC------HHHHHHHHHHHHHhCCCCHHHHHHHH
Q 003563 122 YYIRQAIRAEPKDISLRIHL---ASFYVEIGD------YEKAAESYEQIQKLFPDNVDATKTGA 176 (810)
Q Consensus 122 ~~~~~al~~~p~~~~~~~~l---a~~~~~~g~------~~~A~~~~~~~l~~~p~~~~~~~~la 176 (810)
++-..++..++.+..+|... .......|+ +++-+++.-..+-.+|++..+|..+-
T Consensus 171 eytt~~I~tdi~N~SaW~~r~~~~~~~~~~~~visqk~l~~eL~~i~~~if~~p~~~S~w~y~r 234 (328)
T COG5536 171 EYTTSLIETDIYNNSAWHHRYIWIERRFNRGDVISQKYLEKELEYIFDKIFTDPDNQSVWGYLR 234 (328)
T ss_pred HhHHHHHhhCCCChHHHHHHHHHHHHHHhhcccchHHHHHHHHHHHHhhhhcCccccchhhHHH
Confidence 66777888899998887766 333344554 44556666666677898887776543
No 454
>PF09205 DUF1955: Domain of unknown function (DUF1955); InterPro: IPR015288 Members of this family are found in hypothetical proteins synthesised by the Archaeal organism Sulfolobus. Their exact function has not, as yet, been determined. ; PDB: 1WY6_A.
Probab=49.55 E-value=1.2e+02 Score=26.23 Aligned_cols=145 Identities=15% Similarity=0.134 Sum_probs=62.2
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHc
Q 003563 35 KMLGEASLQYAYGNFEQAISLLKEVVRLSPNLPETYNTLGLAHSALGNHKSAFDFYVIAAHLSPKDSALWKQLLTFAVQK 114 (810)
Q Consensus 35 ~~l~~a~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~p~~~~~~~~la~~~~~~ 114 (810)
.-+-.|......|..++..++..+.+...+-...-|+.--.+- .-+-+--.+.++..-.... ....
T Consensus 4 kkLmeAK~~ildG~V~qGveii~k~v~Ssni~E~NWvICNiiD--aa~C~yvv~~LdsIGkiFD------------is~C 69 (161)
T PF09205_consen 4 KKLMEAKERILDGDVKQGVEIIEKTVNSSNIKEYNWVICNIID--AADCDYVVETLDSIGKIFD------------ISKC 69 (161)
T ss_dssp HHHHHHHHHHHTT-HHHHHHHHHHHHHHS-HHHHTHHHHHHHH--H--HHHHHHHHHHHGGGS-------------GGG-
T ss_pred HHHHHHHHHHHhchHHHHHHHHHHHcCcCCccccceeeeecch--hhchhHHHHHHHHHhhhcC------------chhh
Confidence 3455677888899999999999988876654333333211110 0011111111111111100 0011
Q ss_pred CCHHHHHHHHHHHHHcCCCCHHHHHHHH-HHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCChHHHHHHHH
Q 003563 115 GDTAQAMYYIRQAIRAEPKDISLRIHLA-SFYVEIGDYEKAAESYEQIQKLFPDNVDATKTGAQLFLKCGQTARSIGILE 193 (810)
Q Consensus 115 g~~~~A~~~~~~al~~~p~~~~~~~~la-~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~ 193 (810)
|+...-+.|+-+.-. +. -+..+| .+...+|+-++--+.+....+....+++.+..+|.+|.+.|+..+|-+++.
T Consensus 70 ~NlKrVi~C~~~~n~----~s-e~vD~ALd~lv~~~kkDqLdki~~~l~kn~~~~p~~L~kia~Ay~klg~~r~~~ell~ 144 (161)
T PF09205_consen 70 GNLKRVIECYAKRNK----LS-EYVDLALDILVKQGKKDQLDKIYNELKKNEEINPEFLVKIANAYKKLGNTREANELLK 144 (161)
T ss_dssp S-THHHHHHHHHTT--------HHHHHHHHHHHHTT-HHHHHHHHHHH-----S-HHHHHHHHHHHHHTT-HHHHHHHHH
T ss_pred cchHHHHHHHHHhcc----hH-HHHHHHHHHHHHhccHHHHHHHHHHHhhccCCCHHHHHHHHHHHHHhcchhhHHHHHH
Confidence 333333333322110 11 122222 233455555555555555554444456666666666666666666666666
Q ss_pred HHHhh
Q 003563 194 EYLKV 198 (810)
Q Consensus 194 ~~l~~ 198 (810)
++-+.
T Consensus 145 ~ACek 149 (161)
T PF09205_consen 145 EACEK 149 (161)
T ss_dssp HHHHT
T ss_pred HHHHh
Confidence 66543
No 455
>KOG4521 consensus Nuclear pore complex, Nup160 component [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=49.20 E-value=5.6e+02 Score=31.06 Aligned_cols=116 Identities=16% Similarity=0.248 Sum_probs=60.9
Q ss_pred hHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCC-------------------------C----HHHHHHHHHHHHHcCCH
Q 003563 67 PETYNTLGLAHSALGNHKSAFDFYVIAAHLSPK-------------------------D----SALWKQLLTFAVQKGDT 117 (810)
Q Consensus 67 ~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~p~-------------------------~----~~~~~~la~~~~~~g~~ 117 (810)
+...+.+|.+|...|...+|+.+|.+|..-... . ...+....+++.+.+..
T Consensus 920 ~v~rfmlg~~yl~tge~~kAl~cF~~a~Sg~ge~~aL~~lv~~~~p~~~sv~dG~t~s~e~t~lhYYlkv~rlle~hn~~ 999 (1480)
T KOG4521|consen 920 PVIRFMLGIAYLGTGEPVKALNCFQSALSGFGEGNALRKLVYFLLPKRFSVADGKTPSEELTALHYYLKVVRLLEEHNHA 999 (1480)
T ss_pred HHHHHhhheeeecCCchHHHHHHHHHHhhccccHHHHHHHHHHhcCCCCchhcCCCCCchHHHHHHHHHHHHHHHHhccH
Confidence 445677888888889999999988887643211 0 11222334445555666
Q ss_pred HHHHHHHHHHHHcCCCC-HH---HHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCH---HHHHHHHHHHHHcCChH
Q 003563 118 AQAMYYIRQAIRAEPKD-IS---LRIHLASFYVEIGDYEKAAESYEQIQKLFPDNV---DATKTGAQLFLKCGQTA 186 (810)
Q Consensus 118 ~~A~~~~~~al~~~p~~-~~---~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~---~~~~~la~~~~~~g~~~ 186 (810)
+.+.+...+|++.-|++ +. ....+=.-+..+|.+-+|... +-.+|+.. +.+..+..+++..|..+
T Consensus 1000 E~vcQlA~~AIe~l~dd~ps~a~~~t~vFnhhldlgh~~qAy~a----i~~npdserrrdcLRqlvivLfecg~l~ 1071 (1480)
T KOG4521|consen 1000 EEVCQLAVKAIENLPDDNPSVALISTTVFNHHLDLGHWFQAYKA----ILRNPDSERRRDCLRQLVIVLFECGELE 1071 (1480)
T ss_pred HHHHHHHHHHHHhCCCcchhHHHHHHHHHHhhhchhhHHHHHHH----HHcCCcHHHHHHHHHHHHHHHHhccchH
Confidence 66666666666543322 21 122222333455555555432 22334421 34445555555555543
No 456
>PF04348 LppC: LppC putative lipoprotein; InterPro: IPR007443 This entry includes several bacterial outer membrane antigens, whose molecular function is unknown.; PDB: 3CKM_A.
Probab=46.04 E-value=6.7 Score=43.49 Aligned_cols=93 Identities=12% Similarity=0.049 Sum_probs=0.0
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHHhcCCCCCcHHHHHHHHHHHHhcCCHHHHHHHHHHhh--ccCCchhHhHHHHHH
Q 003563 208 IDLLVAILMENNAYEKTLQHIEHAQIVRFSGKELPLKLKVKAGICYLRLGNMEKAEILFADLQ--WKNAIDHADLITEVA 285 (810)
Q Consensus 208 ~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~--~~~~~~~~~~~~~la 285 (810)
...-+..+...|++..|...+.+.... .-+...........+.+....|++++|+..+.... ...+......+...+
T Consensus 27 ~L~Aa~a~l~~g~~~~A~~ll~~l~~~-~L~~~q~~~~~Ll~A~lal~~~~~~~Al~~L~~~~~~~l~~~~~~~~~~l~A 105 (536)
T PF04348_consen 27 LLLAARALLQEGDWAQAQALLNQLDPQ-QLSPSQQARYQLLRARLALAQGDPEQALSLLNAQDLWQLPPEQQARYHQLRA 105 (536)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred HHHHHHHHHhCCCHHHHHHHHHhcccc-cCChHHHHHHHHHHHHHHHhcCCHHHHHHHhccCCcccCCHHHHHHHHHHHH
Confidence 334455555555665555555544311 00012223334444555555555555555554311 111111223334445
Q ss_pred HHHHHcCCcHHHHHHH
Q 003563 286 DTLMSLGHSNSALKYY 301 (810)
Q Consensus 286 ~~~~~~~~~~~A~~~~ 301 (810)
.++...|++-+|...+
T Consensus 106 ~a~~~~~~~l~Aa~~~ 121 (536)
T PF04348_consen 106 QAYEQQGDPLAAARER 121 (536)
T ss_dssp ----------------
T ss_pred HHHHhcCCHHHHHHHH
Confidence 5555555555554444
No 457
>cd02683 MIT_1 MIT: domain contained within Microtubule Interacting and Trafficking molecules. This sub-family of MIT domains is found in proteins with unknown function, co-occuring with an as yet undescribed domain. The molecular function of the MIT domain is unclear.
Probab=45.95 E-value=50 Score=25.40 Aligned_cols=31 Identities=19% Similarity=0.221 Sum_probs=22.7
Q ss_pred HHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Q 003563 31 PGVTKMLGEASLQYAYGNFEQAISLLKEVVR 61 (810)
Q Consensus 31 ~~~~~~l~~a~~~~~~g~~~~A~~~~~~~l~ 61 (810)
..+..++.+|..+-..|+|++|+.+|.++++
T Consensus 4 ~~a~~l~~~Ave~D~~g~y~eAl~~Y~~aie 34 (77)
T cd02683 4 LAAKEVLKRAVELDQEGRFQEALVCYQEGID 34 (77)
T ss_pred HHHHHHHHHHHHHHHhccHHHHHHHHHHHHH
Confidence 3455667777777888888888888777665
No 458
>PF04840 Vps16_C: Vps16, C-terminal region; InterPro: IPR006925 This protein forms part of the Class C vacuolar protein sorting (Vps) complex. Vps16 is essential for vacuolar protein sorting, which is essential for viability in plants, but not yeast []. The Class C Vps complex is required for SNARE-mediated membrane fusion at the lysosome-like yeast vacuole. It is thought to play essential roles in membrane docking and fusion at the Golgi-to-endosome and endosome-to-vacuole stages of transport []. The role of VPS16 in this complex is not known.; GO: 0006886 intracellular protein transport, 0005737 cytoplasm
Probab=45.95 E-value=3.5e+02 Score=27.78 Aligned_cols=102 Identities=15% Similarity=0.100 Sum_probs=71.3
Q ss_pred HHHHhcCCHHHHHHHHHHhhccCCchhHhHHHHHHHHHHHcCCcHHHHHHHHHHHhccCCCCHHHHHHHHHHHHHccCHH
Q 003563 251 ICYLRLGNMEKAEILFADLQWKNAIDHADLITEVADTLMSLGHSNSALKYYHFLETNAGTDNGYLYLKLAECYLSLKERA 330 (810)
Q Consensus 251 ~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~ 330 (810)
.-+...|+...|..+-.+.- . .+...|+....++...+++++-..+... ...|-.|.-...++...|+..
T Consensus 185 ~~li~~~~~k~A~kl~k~Fk---v-~dkrfw~lki~aLa~~~~w~eL~~fa~s------kKsPIGyepFv~~~~~~~~~~ 254 (319)
T PF04840_consen 185 RKLIEMGQEKQAEKLKKEFK---V-PDKRFWWLKIKALAENKDWDELEKFAKS------KKSPIGYEPFVEACLKYGNKK 254 (319)
T ss_pred HHHHHCCCHHHHHHHHHHcC---C-cHHHHHHHHHHHHHhcCCHHHHHHHHhC------CCCCCChHHHHHHHHHCCCHH
Confidence 34466788888777766641 1 2667788889999999999876665421 223445555667777889999
Q ss_pred HHHHHHHHHHhhcCCCHHHHHHHHHHHHHcCCHHHHHHhcC
Q 003563 331 HAIMFFYKALDRFEDNIDARLTLASLLLEEAKEEEAITLLS 371 (810)
Q Consensus 331 ~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~ 371 (810)
+|..+..+ -|+ ......|.+.|++.+|.+..-
T Consensus 255 eA~~yI~k----~~~-----~~rv~~y~~~~~~~~A~~~A~ 286 (319)
T PF04840_consen 255 EASKYIPK----IPD-----EERVEMYLKCGDYKEAAQEAF 286 (319)
T ss_pred HHHHHHHh----CCh-----HHHHHHHHHCCCHHHHHHHHH
Confidence 99988887 121 345677889999999987654
No 459
>KOG2062 consensus 26S proteasome regulatory complex, subunit RPN2/PSMD1 [Posttranslational modification, protein turnover, chaperones]
Probab=45.83 E-value=5.1e+02 Score=29.62 Aligned_cols=149 Identities=17% Similarity=0.228 Sum_probs=84.1
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHhhccC-CchhHhHHHHHHHHHHHcCCcHHHHHHHHHHHhccCCCCHHHHHHHHHHHHH
Q 003563 247 VKAGICYLRLGNMEKAEILFADLQWKN-AIDHADLITEVADTLMSLGHSNSALKYYHFLETNAGTDNGYLYLKLAECYLS 325 (810)
Q Consensus 247 ~~la~~~~~~g~~~~A~~~~~~~~~~~-~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~la~~~~~ 325 (810)
...|.++...|+.++|..+.++++... |--...-.+.++.+|...|+..--..++--++.. ..++..-...+|.-+.-
T Consensus 505 l~vGiaL~~ygrqe~Ad~lI~el~~dkdpilR~~Gm~t~alAy~GTgnnkair~lLh~aVsD-~nDDVrRaAVialGFVl 583 (929)
T KOG2062|consen 505 LAVGIALVVYGRQEDADPLIKELLRDKDPILRYGGMYTLALAYVGTGNNKAIRRLLHVAVSD-VNDDVRRAAVIALGFVL 583 (929)
T ss_pred HHHhHHHHHhhhhhhhHHHHHHHhcCCchhhhhhhHHHHHHHHhccCchhhHHHhhcccccc-cchHHHHHHHHHheeeE
Confidence 345666677777778888888775432 2222333566777777777765555555444421 22333333333333334
Q ss_pred ccCHHHHHHHHHHHHhhcCCCH--HHHHHHHHHHHHcCCHHHHHHhcCCCCCCCcccCCCCCCChhhhHHHHHHHHHHHH
Q 003563 326 LKERAHAIMFFYKALDRFEDNI--DARLTLASLLLEEAKEEEAITLLSPPKDLDSLDMNSDKSNPWWLNEKIIMKLCHIY 403 (810)
Q Consensus 326 ~g~~~~A~~~~~~al~~~p~~~--~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~la~~~ 403 (810)
..+++......+-..+....+. .+-..||-++...| ..+|+.+++.... +|.+- .+..++..+|.+.
T Consensus 584 ~~dp~~~~s~V~lLses~N~HVRyGaA~ALGIaCAGtG-~~eAi~lLepl~~-D~~~f---------VRQgAlIa~amIm 652 (929)
T KOG2062|consen 584 FRDPEQLPSTVSLLSESYNPHVRYGAAMALGIACAGTG-LKEAINLLEPLTS-DPVDF---------VRQGALIALAMIM 652 (929)
T ss_pred ecChhhchHHHHHHhhhcChhhhhhHHHHHhhhhcCCC-cHHHHHHHhhhhc-ChHHH---------HHHHHHHHHHHHH
Confidence 4566666655554444322222 23345666666666 4678999887766 66552 3455777777777
Q ss_pred HhcC
Q 003563 404 RAKG 407 (810)
Q Consensus 404 ~~~g 407 (810)
.++.
T Consensus 653 ~Q~t 656 (929)
T KOG2062|consen 653 IQQT 656 (929)
T ss_pred Hhcc
Confidence 6654
No 460
>KOG0686 consensus COP9 signalosome, subunit CSN1 [Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=44.25 E-value=4.1e+02 Score=27.99 Aligned_cols=96 Identities=18% Similarity=0.149 Sum_probs=52.4
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHhhccC--CchhHhHHHHHHHHHHHcCCcHHHHHHHHHHHhccC-------CCCHH
Q 003563 244 KLKVKAGICYLRLGNMEKAEILFADLQWKN--AIDHADLITEVADTLMSLGHSNSALKYYHFLETNAG-------TDNGY 314 (810)
Q Consensus 244 ~~~~~la~~~~~~g~~~~A~~~~~~~~~~~--~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~-------~~~~~ 314 (810)
.++..+|.-|...|+.+.|++.|.++-.-. .......+.++..+-...|+|..-..+-.++..... .-.+.
T Consensus 151 ra~~Dl~dhy~~cG~l~~Alr~YsR~RdYCTs~khvInm~ln~i~VSI~~~nw~hv~sy~~~A~st~~~~~~~~q~v~~k 230 (466)
T KOG0686|consen 151 RALEDLGDHYLDCGQLDNALRCYSRARDYCTSAKHVINMCLNLILVSIYMGNWGHVLSYISKAESTPDANENLAQEVPAK 230 (466)
T ss_pred HHHHHHHHHHHHhccHHHHHhhhhhhhhhhcchHHHHHHHHHHHHHHHhhcchhhhhhHHHHHHhCchhhhhHHHhcCcc
Confidence 345566666777777777777777643211 123445566666666677777666666665554310 00122
Q ss_pred HHHHHHHHHHHccCHHHHHHHHHHH
Q 003563 315 LYLKLAECYLSLKERAHAIMFFYKA 339 (810)
Q Consensus 315 ~~~~la~~~~~~g~~~~A~~~~~~a 339 (810)
+...-|.+...+++|..|..+|-.+
T Consensus 231 l~C~agLa~L~lkkyk~aa~~fL~~ 255 (466)
T KOG0686|consen 231 LKCAAGLANLLLKKYKSAAKYFLLA 255 (466)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHhC
Confidence 3333444444555666666655444
No 461
>PF04212 MIT: MIT (microtubule interacting and transport) domain; InterPro: IPR007330 The MIT domain is found in vacuolar sorting proteins, spastin (probable ATPase involved in the assembly or function of nuclear protein complexes), and a sorting nexin, which may play a role in intracellular trafficking.; PDB: 2DL1_A 2JQK_A 1WR0_A 2CPT_A 2JQH_A 2V6Y_A 2JQ9_A 2K3W_A 1YXR_A 3EAB_E ....
Probab=43.85 E-value=65 Score=24.01 Aligned_cols=29 Identities=28% Similarity=0.465 Sum_probs=19.5
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Q 003563 33 VTKMLGEASLQYAYGNFEQAISLLKEVVR 61 (810)
Q Consensus 33 ~~~~l~~a~~~~~~g~~~~A~~~~~~~l~ 61 (810)
...++..|..+-..|++++|+.+|.+++.
T Consensus 5 A~~~~~~Av~~D~~g~~~~A~~~Y~~ai~ 33 (69)
T PF04212_consen 5 AIELIKKAVEADEAGNYEEALELYKEAIE 33 (69)
T ss_dssp HHHHHHHHHHHHHTTSHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHHH
Confidence 34456667777777777777777776654
No 462
>cd02681 MIT_calpain7_1 MIT: domain contained within Microtubule Interacting and Trafficking molecules. This sub-family of MIT domains is found in the nuclear thiol protease PalBH. The molecular function of the MIT domain is unclear.
Probab=43.81 E-value=53 Score=25.20 Aligned_cols=30 Identities=17% Similarity=0.213 Sum_probs=22.7
Q ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Q 003563 32 GVTKMLGEASLQYAYGNFEQAISLLKEVVR 61 (810)
Q Consensus 32 ~~~~~l~~a~~~~~~g~~~~A~~~~~~~l~ 61 (810)
.+..+..+|..+-..|+|++|+.+|.++++
T Consensus 5 ~Ai~~a~~Ave~D~~g~y~eA~~~Y~~aie 34 (76)
T cd02681 5 DAVQFARLAVQRDQEGRYSEAVFYYKEAAQ 34 (76)
T ss_pred HHHHHHHHHHHHHHccCHHHHHHHHHHHHH
Confidence 445667777778888888888888888765
No 463
>PF11846 DUF3366: Domain of unknown function (DUF3366); InterPro: IPR021797 This domain is functionally uncharacterised. This domain is found in bacteria. This presumed domain is about 200 amino acids in length.
Probab=43.28 E-value=72 Score=29.90 Aligned_cols=47 Identities=17% Similarity=0.243 Sum_probs=32.9
Q ss_pred HHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCC
Q 003563 86 AFDFYVIAAHLSPKDSALWKQLLTFAVQKGDTAQAMYYIRQAIRAEPK 133 (810)
Q Consensus 86 A~~~~~~a~~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~ 133 (810)
.++..++.++..| ++..+..++.++...|+.++|.....++....|.
T Consensus 130 ~~~~a~~~l~~~P-~~~~~~~~a~~l~~~G~~~eA~~~~~~~~~lyP~ 176 (193)
T PF11846_consen 130 YIEWAERLLRRRP-DPNVYQRYALALALLGDPEEARQWLARARRLYPA 176 (193)
T ss_pred HHHHHHHHHHhCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCc
Confidence 3444455555555 5667777788888888888888888888877773
No 464
>cd02682 MIT_AAA_Arch MIT: domain contained within Microtubule Interacting and Trafficking molecules. This sub-family of MIT domains is found in mostly archaebacterial AAA-ATPases. The molecular function of the MIT domain is unclear.
Probab=43.27 E-value=97 Score=23.69 Aligned_cols=23 Identities=22% Similarity=-0.018 Sum_probs=10.7
Q ss_pred HHHHHHHHccCHHHHHHHHHHHH
Q 003563 318 KLAECYLSLKERAHAIMFFYKAL 340 (810)
Q Consensus 318 ~la~~~~~~g~~~~A~~~~~~al 340 (810)
..|.-+-..|++++|+.+|++++
T Consensus 11 ~~AVe~D~~gr~~eAi~~Y~~aI 33 (75)
T cd02682 11 INAVKAEKEGNAEDAITNYKKAI 33 (75)
T ss_pred HHHHHHHhcCCHHHHHHHHHHHH
Confidence 33444444555555554444443
No 465
>KOG4151 consensus Myosin assembly protein/sexual cycle protein and related proteins [Posttranslational modification, protein turnover, chaperones; Cell cycle control, cell division, chromosome partitioning; General function prediction only]
Probab=42.40 E-value=1e+02 Score=35.07 Aligned_cols=106 Identities=14% Similarity=0.116 Sum_probs=72.2
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHhCCC----ChHHHHHHHHHHHH--cCChHHHHHHHHHHHhcCCCCHHHHHHHHH
Q 003563 36 MLGEASLQYAYGNFEQAISLLKEVVRLSPN----LPETYNTLGLAHSA--LGNHKSAFDFYVIAAHLSPKDSALWKQLLT 109 (810)
Q Consensus 36 ~l~~a~~~~~~g~~~~A~~~~~~~l~~~p~----~~~~~~~l~~~~~~--~g~~~~A~~~~~~a~~~~p~~~~~~~~la~ 109 (810)
+...++..+..+++.+|.--|..++..-|. ........+.++.. .|++.+++.-..-++...|....++...+.
T Consensus 56 ~~~E~n~~~~K~d~~~~~~~~~~~~~llp~~~~~~a~~~~~~~s~~m~~~l~~~~~~~~E~~la~~~~p~i~~~Ll~r~~ 135 (748)
T KOG4151|consen 56 LKEEGNKLFQKRDYEGAMFRYDCAIKLLPKDHHVVATLRSNQASCYMQLGLGEYPKAIPECELALESQPRISKALLKRAR 135 (748)
T ss_pred HHhhhhHHhhhhhhhccchhhhhhheeccccchhhhhHHHHHHHHHhhcCccchhhhcCchhhhhhccchHHHHHhhhhh
Confidence 345677777778888877777777666653 23334455555554 467777777777777777877777777777
Q ss_pred HHHHcCCHHHHHHHHHHHHHcCCCCHHHHHHH
Q 003563 110 FAVQKGDTAQAMYYIRQAIRAEPKDISLRIHL 141 (810)
Q Consensus 110 ~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l 141 (810)
+|...+.++-|++-..-.....|.++.+....
T Consensus 136 ~y~al~k~d~a~rdl~i~~~~~p~~~~~~eif 167 (748)
T KOG4151|consen 136 KYEALNKLDLAVRDLRIVEKMDPSNVSASEIF 167 (748)
T ss_pred HHHHHHHHHHHHHHHHHHhcCCCCcchHHHHH
Confidence 77777777777777666666777775554433
No 466
>COG4259 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=41.16 E-value=1.5e+02 Score=23.93 Aligned_cols=50 Identities=16% Similarity=0.097 Sum_probs=36.9
Q ss_pred HHHHHHHhccCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHhhcCCCHH
Q 003563 299 KYYHFLETNAGTDNGYLYLKLAECYLSLKERAHAIMFFYKALDRFEDNID 348 (810)
Q Consensus 299 ~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~ 348 (810)
+.++++-....+-.|..+..+|.+|...|+.+.|...|+.--.+.|.+..
T Consensus 58 ~~~ek~~ak~~~vpPG~HAhLGlLys~~G~~e~a~~eFetEKalFPES~~ 107 (121)
T COG4259 58 KYLEKIGAKNGAVPPGYHAHLGLLYSNSGKDEQAVREFETEKALFPESGV 107 (121)
T ss_pred HHHHHHhhcCCCCCCcHHHHHHHHHhhcCChHHHHHHHHHhhhhCccchh
Confidence 34445544444556778888888899999999998888888888887653
No 467
>KOG4279 consensus Serine/threonine protein kinase [Signal transduction mechanisms]
Probab=41.14 E-value=1.4e+02 Score=33.75 Aligned_cols=69 Identities=20% Similarity=0.270 Sum_probs=41.8
Q ss_pred cCCHHHHHHHHHHHHHhC-CCChHHHHHHHHHHHH---------cCChHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcC
Q 003563 46 YGNFEQAISLLKEVVRLS-PNLPETYNTLGLAHSA---------LGNHKSAFDFYVIAAHLSPKDSALWKQLLTFAVQKG 115 (810)
Q Consensus 46 ~g~~~~A~~~~~~~l~~~-p~~~~~~~~l~~~~~~---------~g~~~~A~~~~~~a~~~~p~~~~~~~~la~~~~~~g 115 (810)
.||-++|+...-.+++.. |-.++.+...|.+|-. .+..+.|+++|+++.+..|.... -.+++.++...|
T Consensus 256 ~GDRakAL~~~l~lve~eg~vapDm~Cl~GRIYKDmF~~S~ytDa~s~~~a~~WyrkaFeveP~~~s-GIN~atLL~aaG 334 (1226)
T KOG4279|consen 256 PGDRAKALNTVLPLVEKEGPVAPDMYCLCGRIYKDMFIASNYTDAESLNHAIEWYRKAFEVEPLEYS-GINLATLLRAAG 334 (1226)
T ss_pred CccHHHHHHHHHHHHHhcCCCCCceeeeechhhhhhhhccCCcchhhHHHHHHHHHHHhccCchhhc-cccHHHHHHHhh
Confidence 467777777777766653 3456677777777643 24456677888888877775322 223444444443
No 468
>cd02680 MIT_calpain7_2 MIT: domain contained within Microtubule Interacting and Trafficking molecules. This sub-family of MIT domains is found in the nuclear thiol protease PalBH. The molecular function of the MIT domain is unclear.
Probab=41.04 E-value=52 Score=25.11 Aligned_cols=16 Identities=25% Similarity=0.484 Sum_probs=8.3
Q ss_pred cCCHHHHHHHHHHHHH
Q 003563 114 KGDTAQAMYYIRQAIR 129 (810)
Q Consensus 114 ~g~~~~A~~~~~~al~ 129 (810)
.|++++|+.+|..+++
T Consensus 19 ~gny~eA~~lY~~ale 34 (75)
T cd02680 19 KGNAEEAIELYTEAVE 34 (75)
T ss_pred hhhHHHHHHHHHHHHH
Confidence 3555555555555544
No 469
>PF10037 MRP-S27: Mitochondrial 28S ribosomal protein S27; InterPro: IPR019266 Ribosomes are the particles that catalyse mRNA-directed protein synthesis in all organisms. The codons of the mRNA are exposed on the ribosome to allow tRNA binding. This leads to the incorporation of amino acids into the growing polypeptide chain in accordance with the genetic information. Incoming amino acid monomers enter the ribosomal A site in the form of aminoacyl-tRNAs complexed with elongation factor Tu (EF-Tu) and GTP. The growing polypeptide chain, situated in the P site as peptidyl-tRNA, is then transferred to aminoacyl-tRNA and the new peptidyl-tRNA, extended by one residue, is translocated to the P site with the aid the elongation factor G (EF-G) and GTP as the deacylated tRNA is released from the ribosome through one or more exit sites [, ]. About 2/3 of the mass of the ribosome consists of RNA and 1/3 of protein. The proteins are named in accordance with the subunit of the ribosome which they belong to - the small (S1 to S31) and the large (L1 to L44). Usually they decorate the rRNA cores of the subunits. Many ribosomal proteins, particularly those of the large subunit, are composed of a globular, surfaced-exposed domain with long finger-like projections that extend into the rRNA core to stabilise its structure. Most of the proteins interact with multiple RNA elements, often from different domains. In the large subunit, about 1/3 of the 23S rRNA nucleotides are at least in van der Waal's contact with protein, and L22 interacts with all six domains of the 23S rRNA. Proteins S4 and S7, which initiate assembly of the 16S rRNA, are located at junctions of five and four RNA helices, respectively. In this way proteins serve to organise and stabilise the rRNA tertiary structure. While the crucial activities of decoding and peptide transfer are RNA based, proteins play an active role in functions that may have evolved to streamline the process of protein synthesis. In addition to their function in the ribosome, many ribosomal proteins have some function 'outside' the ribosome [, ]. This entry represents a family of small ribosomal proteins possessing one of three conserved sequence blocks found in proteins that stimulate the dissociation of guanine nucleotides from G-proteins. This leaves open the possibility that they may be functional partners of GTP-binding ribosomal proteins [].
Probab=40.73 E-value=3.7e+02 Score=28.91 Aligned_cols=58 Identities=16% Similarity=0.036 Sum_probs=26.5
Q ss_pred HHHHHHHhcCCHHHHHHHHHHhhccCCchhHhHHHHHHHHHHHcCCcHHHHHHHHHHH
Q 003563 248 KAGICYLRLGNMEKAEILFADLQWKNAIDHADLITEVADTLMSLGHSNSALKYYHFLE 305 (810)
Q Consensus 248 ~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~ 305 (810)
.+...++..|..++++.++..=+.-+--.+.-....+-+.+++.|+|..|.++...+.
T Consensus 108 a~vR~~l~~~~~~~~l~~L~n~~~yGiF~D~~s~n~Lmd~fl~~~~~~~A~~V~~~~~ 165 (429)
T PF10037_consen 108 ALVRQCLELGAEDELLELLKNRLQYGIFPDNFSFNLLMDHFLKKGNYKSAAKVATEMM 165 (429)
T ss_pred HHHHHHHhcCCHHHHHHHHhChhhcccCCChhhHHHHHHHHhhcccHHHHHHHHHHHH
Confidence 3444455555555555555442222111133344444555555555555555554443
No 470
>PHA02537 M terminase endonuclease subunit; Provisional
Probab=40.73 E-value=38 Score=32.51 Aligned_cols=92 Identities=9% Similarity=0.052 Sum_probs=48.4
Q ss_pred HHHcCChHHHHHHHHHHHhcCCCCH------------HHHHHHHHHHHHcCCHHH--HHHHHHHHHHc--CCCCHHH--H
Q 003563 77 HSALGNHKSAFDFYVIAAHLSPKDS------------ALWKQLLTFAVQKGDTAQ--AMYYIRQAIRA--EPKDISL--R 138 (810)
Q Consensus 77 ~~~~g~~~~A~~~~~~a~~~~p~~~------------~~~~~la~~~~~~g~~~~--A~~~~~~al~~--~p~~~~~--~ 138 (810)
.+..|+++.|+++...+++.+-.-| +-....+......|..-+ -...+...... -|+...+ +
T Consensus 93 ~~D~Gd~~~AL~ia~yAI~~~l~~Pd~f~R~~~t~vaeev~~~A~~~~~ag~~~e~~~~~~~~~l~~~~dmpd~vrAKl~ 172 (230)
T PHA02537 93 RFDIGDFDGALEIAEYALEHGLTMPDQFRRTLANFVAEEVANAALKAASAGESVEPYFLRVFLDLTTEWDMPDEVRAKLY 172 (230)
T ss_pred eeeccCHHHHHHHHHHHHHcCCCCCccccCCchHHHHHHHHHHHHHHHHcCCCCChHHHHHHHHHHhcCCCChHHHHHHH
Confidence 4466777777777777776642111 111222333344444211 11222222221 1333333 4
Q ss_pred HHHHHHHH---------HcCCHHHHHHHHHHHHHhCCCC
Q 003563 139 IHLASFYV---------EIGDYEKAAESYEQIQKLFPDN 168 (810)
Q Consensus 139 ~~la~~~~---------~~g~~~~A~~~~~~~l~~~p~~ 168 (810)
...|..+. ..++...|+.++++++.++|.-
T Consensus 173 K~~G~~llr~~~g~~~~d~~~l~~Al~~L~rA~~l~~k~ 211 (230)
T PHA02537 173 KAAGYLLLRNEKGEPIGDAETLQLALALLQRAFQLNDKC 211 (230)
T ss_pred HHHHHHHhhcccCCCccCcccHHHHHHHHHHHHHhCCCC
Confidence 45566553 4567889999999999998864
No 471
>PF01239 PPTA: Protein prenyltransferase alpha subunit repeat; InterPro: IPR002088 Protein prenylation is the posttranslational attachment of either a farnesyl group or a geranylgeranyl group via a thioether linkage (-C-S-C-) to a cysteine at or near the carboxyl terminus of the protein. Farnesyl and geranylgeranyl groups are polyisoprenes, unsaturated hydrocarbons with a multiple of five carbons; the chain is 15 carbons long in the farnesyl moiety and 20 carbons long in the geranylgeranyl moiety. There are three different protein prenyltransferases in humans: farnesyltransferase (FT) and geranylgeranyltransferase 1 (GGT1) share the same motif (the CaaX box) around the cysteine in their substrates, and are thus called CaaX prenyltransferases, whereas geranylgeranyltransferase 2 (GGT2, also called Rab geranylgeranyltransferase) recognises a different motif and is thus called a non-CaaX prenyltransferase. Protein prenyltransferases are currently known only in eukaryotes, but they are widespread, being found in vertebrates, insects, nematodes, plants, fungi and protozoa, including several parasites. Each protein consists of two subunits, alpha and beta; the alpha subunit of FT and GGT1 is encoded by the same gene, FNTA. The alpha subunit is thought to participate in a stable complex with the isoprenyl substrate; the beta subunit binds the peptide substrate. In the alpha subunits of both types of protein prenyltransferases, seven tetratricopeptide repeats are formed by pairs of helices that are stabilised by conserved intercalating residues. The alpha subunits of GGT2 in mammals and plants also have an immunoglobulin-like domain between the fifth and sixth tetratricopeptide repeat, as well as leucine-rich repeats at the carboxyl terminus. The functions of these additional domains in GGT2 are as yet undefined, but they are apparently not directly involved in the interaction with substrates and Rab escort proteins. The tetratricopeptide repeats of the alpha subunit form a right-handed superhelix, which embraces the (alpha-alpha)6 barrel of the beta subunit []. ; GO: 0008318 protein prenyltransferase activity, 0018342 protein prenylation; PDB: 1S63_A 1LD7_A 1LD8_A 2H6G_A 1SA4_A 1MZC_A 1TN6_A 2F0Y_A 2H6H_A 2H6F_A ....
Probab=40.65 E-value=81 Score=18.90 Aligned_cols=26 Identities=31% Similarity=0.464 Sum_probs=20.5
Q ss_pred HHHHHHHHHhCCCChhHhHHHHHHHH
Q 003563 592 FDCAKYILQLHPYSLSAWNCYYKVLS 617 (810)
Q Consensus 592 ~~~~r~~~~~~p~~~~~~~~~~~~~~ 617 (810)
++....++..+|.+..+|+-...++.
T Consensus 3 l~~~~~~l~~~pknys~W~yR~~ll~ 28 (31)
T PF01239_consen 3 LEFTKKALEKDPKNYSAWNYRRWLLK 28 (31)
T ss_dssp HHHHHHHHHHSTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHCcccccHHHHHHHHHH
Confidence 45677888999999999987765554
No 472
>PF10037 MRP-S27: Mitochondrial 28S ribosomal protein S27; InterPro: IPR019266 Ribosomes are the particles that catalyse mRNA-directed protein synthesis in all organisms. The codons of the mRNA are exposed on the ribosome to allow tRNA binding. This leads to the incorporation of amino acids into the growing polypeptide chain in accordance with the genetic information. Incoming amino acid monomers enter the ribosomal A site in the form of aminoacyl-tRNAs complexed with elongation factor Tu (EF-Tu) and GTP. The growing polypeptide chain, situated in the P site as peptidyl-tRNA, is then transferred to aminoacyl-tRNA and the new peptidyl-tRNA, extended by one residue, is translocated to the P site with the aid the elongation factor G (EF-G) and GTP as the deacylated tRNA is released from the ribosome through one or more exit sites [, ]. About 2/3 of the mass of the ribosome consists of RNA and 1/3 of protein. The proteins are named in accordance with the subunit of the ribosome which they belong to - the small (S1 to S31) and the large (L1 to L44). Usually they decorate the rRNA cores of the subunits. Many ribosomal proteins, particularly those of the large subunit, are composed of a globular, surfaced-exposed domain with long finger-like projections that extend into the rRNA core to stabilise its structure. Most of the proteins interact with multiple RNA elements, often from different domains. In the large subunit, about 1/3 of the 23S rRNA nucleotides are at least in van der Waal's contact with protein, and L22 interacts with all six domains of the 23S rRNA. Proteins S4 and S7, which initiate assembly of the 16S rRNA, are located at junctions of five and four RNA helices, respectively. In this way proteins serve to organise and stabilise the rRNA tertiary structure. While the crucial activities of decoding and peptide transfer are RNA based, proteins play an active role in functions that may have evolved to streamline the process of protein synthesis. In addition to their function in the ribosome, many ribosomal proteins have some function 'outside' the ribosome [, ]. This entry represents a family of small ribosomal proteins possessing one of three conserved sequence blocks found in proteins that stimulate the dissociation of guanine nucleotides from G-proteins. This leaves open the possibility that they may be functional partners of GTP-binding ribosomal proteins [].
Probab=40.26 E-value=3.8e+02 Score=28.83 Aligned_cols=108 Identities=11% Similarity=0.042 Sum_probs=71.0
Q ss_pred HHHhcCCHHHHHHHHHHhhccC--CchhHhHHHHHHHHHHHcCCcHHHHHHHHHHHhccCCCCHHHHHHHHHHHHHccCH
Q 003563 252 CYLRLGNMEKAEILFADLQWKN--AIDHADLITEVADTLMSLGHSNSALKYYHFLETNAGTDNGYLYLKLAECYLSLKER 329 (810)
Q Consensus 252 ~~~~~g~~~~A~~~~~~~~~~~--~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~ 329 (810)
......+.+++..++-+..... ....+.....+.+.+++.|..++++.++..=+..+-..+...+..+-..+.+.|++
T Consensus 75 ~~~~~~~~d~~~~~L~k~R~s~~~~~~~~~t~ha~vR~~l~~~~~~~~l~~L~n~~~yGiF~D~~s~n~Lmd~fl~~~~~ 154 (429)
T PF10037_consen 75 NVESKDDLDEVEDVLYKFRHSPNCSYLLPSTHHALVRQCLELGAEDELLELLKNRLQYGIFPDNFSFNLLMDHFLKKGNY 154 (429)
T ss_pred hcCCHhHHHHHHHHHHHHHcCcccccccCccHHHHHHHHHhcCCHHHHHHHHhChhhcccCCChhhHHHHHHHHhhcccH
Confidence 3334445666777766653321 11123345678889999999999999997665555556777888888999999999
Q ss_pred HHHHHHHHHHHhh-cCCCHHH-HHHHHHHHHH
Q 003563 330 AHAIMFFYKALDR-FEDNIDA-RLTLASLLLE 359 (810)
Q Consensus 330 ~~A~~~~~~al~~-~p~~~~~-~~~la~~~~~ 359 (810)
..|.+........ ..+++.+ ...+..+|.-
T Consensus 155 ~~A~~V~~~~~lQe~~~~~~t~~L~l~~~~~~ 186 (429)
T PF10037_consen 155 KSAAKVATEMMLQEEFDNPSTQALALYSCYKY 186 (429)
T ss_pred HHHHHHHHHHHHhhccCCchHHHHHHHHHHHh
Confidence 9999888776644 3344333 2334444433
No 473
>cd02680 MIT_calpain7_2 MIT: domain contained within Microtubule Interacting and Trafficking molecules. This sub-family of MIT domains is found in the nuclear thiol protease PalBH. The molecular function of the MIT domain is unclear.
Probab=40.04 E-value=61 Score=24.78 Aligned_cols=31 Identities=32% Similarity=0.310 Sum_probs=21.0
Q ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Q 003563 32 GVTKMLGEASLQYAYGNFEQAISLLKEVVRL 62 (810)
Q Consensus 32 ~~~~~l~~a~~~~~~g~~~~A~~~~~~~l~~ 62 (810)
.+..++.+|...-..|+|++|+.+|..+++.
T Consensus 5 kai~Lv~~A~~eD~~gny~eA~~lY~~ale~ 35 (75)
T cd02680 5 RAHFLVTQAFDEDEKGNAEEAIELYTEAVEL 35 (75)
T ss_pred HHHHHHHHHHHhhHhhhHHHHHHHHHHHHHH
Confidence 3445666666667777777777777777653
No 474
>KOG1497 consensus COP9 signalosome, subunit CSN4 [Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=39.47 E-value=4.2e+02 Score=26.83 Aligned_cols=99 Identities=16% Similarity=0.026 Sum_probs=54.7
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHHhc---CCCCCcHHHHHHHHHHHHhcCCHHHHHHHHHHh--hccC---Cchh
Q 003563 206 SVIDLLVAILMENNAYEKTLQHIEHAQIVRF---SGKELPLKLKVKAGICYLRLGNMEKAEILFADL--QWKN---AIDH 277 (810)
Q Consensus 206 ~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~---~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~--~~~~---~~~~ 277 (810)
.....++.+|...++|..|-..+.-.-...+ .+.......+..+|.+|...++..+|..+..++ +..+ +.-.
T Consensus 104 ~irl~LAsiYE~Eq~~~~aaq~L~~I~~~tg~~~~d~~~kl~l~iriarlyLe~~d~veae~~inRaSil~a~~~Ne~Lq 183 (399)
T KOG1497|consen 104 SIRLHLASIYEKEQNWRDAAQVLVGIPLDTGQKAYDVEQKLLLCIRIARLYLEDDDKVEAEAYINRASILQAESSNEQLQ 183 (399)
T ss_pred HHHHHHHHHHHHhhhHHHHHHHHhccCcccchhhhhhHHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHhhhcccCHHHH
Confidence 3556788899988999888777654321100 001122345667777777777777777776663 1111 1111
Q ss_pred HhHHHHHHHHHHHcCCcHHHHHHHHHH
Q 003563 278 ADLITEVADTLMSLGHSNSALKYYHFL 304 (810)
Q Consensus 278 ~~~~~~la~~~~~~~~~~~A~~~~~~~ 304 (810)
.......|+++-..+++-+|...|-++
T Consensus 184 ie~kvc~ARvlD~krkFlEAAqrYyel 210 (399)
T KOG1497|consen 184 IEYKVCYARVLDYKRKFLEAAQRYYEL 210 (399)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 222333455555566666655555443
No 475
>PF13226 DUF4034: Domain of unknown function (DUF4034)
Probab=38.47 E-value=3.5e+02 Score=27.01 Aligned_cols=93 Identities=8% Similarity=-0.002 Sum_probs=52.9
Q ss_pred HHHHHHHHHHcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCC-CCHHHHHHHHHHHHHcCChHHHHHHHHHHHhh
Q 003563 120 AMYYIRQAIRAEPKDISLRIHLASFYVEIGDYEKAAESYEQIQKLFP-DNVDATKTGAQLFLKCGQTARSIGILEEYLKV 198 (810)
Q Consensus 120 A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p-~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~ 198 (810)
-...++.-++..|++..++..+|..+....=-- +...... ...+-+.... .-.+.|...+.+++.+
T Consensus 62 ~~~~LkaWv~a~P~Sy~A~La~g~~~~~~Aw~~-------RG~~~A~~V~~~~W~~~~------~~~d~A~~~ll~A~~l 128 (277)
T PF13226_consen 62 RLAVLKAWVAACPKSYHAHLAMGMYWVHRAWDI-------RGSGYASTVTEAQWLGAH------QACDQAVAALLKAIEL 128 (277)
T ss_pred HHHHHHHHHHHCCCChHHHHHHHHHHHHHHHHH-------HccchhcccCHHHHHHHH------HHHHHHHHHHHHHHhc
Confidence 455555666677777777777766654321100 0000000 0112222111 1346789999999999
Q ss_pred CCCCCChHHHHHHHHHHHHcCCHHHHHHH
Q 003563 199 HPSDADLSVIDLLVAILMENNAYEKTLQH 227 (810)
Q Consensus 199 ~p~~~~~~~~~~la~~~~~~g~~~~A~~~ 227 (810)
+|.... +...+..+-...|.++=-..+
T Consensus 129 ~pr~~~--A~~~m~~~s~~fgeP~WL~~l 155 (277)
T PF13226_consen 129 SPRPVA--AAIGMINISAYFGEPDWLAAL 155 (277)
T ss_pred CCCchH--HHHHHHHHHhhcCCchHHHHH
Confidence 999876 566777777778877644333
No 476
>PF14276 DUF4363: Domain of unknown function (DUF4363)
Probab=37.47 E-value=1.8e+02 Score=24.63 Aligned_cols=33 Identities=12% Similarity=0.164 Sum_probs=28.4
Q ss_pred CHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Q 003563 30 SPGVTKMLGEASLQYAYGNFEQAISLLKEVVRL 62 (810)
Q Consensus 30 ~~~~~~~l~~a~~~~~~g~~~~A~~~~~~~l~~ 62 (810)
...+...+..+......+++++|...+.+....
T Consensus 25 ~~~i~~~l~~i~~~i~~~dW~~A~~~~~~l~~~ 57 (121)
T PF14276_consen 25 TDSIEEQLEQIEEAIENEDWEKAYKETEELEKE 57 (121)
T ss_pred HHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHH
Confidence 456778888999999999999999999988764
No 477
>PF10952 DUF2753: Protein of unknown function (DUF2753); InterPro: IPR020206 This entry represents a group of uncharacterised proteins.
Probab=36.78 E-value=1.9e+02 Score=24.51 Aligned_cols=25 Identities=20% Similarity=0.260 Sum_probs=15.3
Q ss_pred HHHHHHHHHcCCHHHHHHHHHHHHH
Q 003563 105 KQLLTFAVQKGDTAQAMYYIRQAIR 129 (810)
Q Consensus 105 ~~la~~~~~~g~~~~A~~~~~~al~ 129 (810)
..+|+...+.+++-.++-.|++|+.
T Consensus 5 tllAd~a~~~~~~l~si~hYQqAls 29 (140)
T PF10952_consen 5 TLLADQAFKEADPLRSILHYQQALS 29 (140)
T ss_pred HHHHHHHhhcccHHHHHHHHHHHHH
Confidence 4456666666666666666666655
No 478
>KOG1920 consensus IkappaB kinase complex, IKAP component [Transcription]
Probab=36.50 E-value=8.8e+02 Score=29.65 Aligned_cols=23 Identities=9% Similarity=0.213 Sum_probs=16.2
Q ss_pred HHHHHHHHHcCCHHHHHHHHHHH
Q 003563 37 LGEASLQYAYGNFEQAISLLKEV 59 (810)
Q Consensus 37 l~~a~~~~~~g~~~~A~~~~~~~ 59 (810)
+..-..++.+++|.+|.++.++-
T Consensus 681 La~vr~~l~~~~y~~AF~~~Rkh 703 (1265)
T KOG1920|consen 681 LAKVRTLLDRLRYKEAFEVMRKH 703 (1265)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHh
Confidence 34455667778888888887764
No 479
>PF06957 COPI_C: Coatomer (COPI) alpha subunit C-terminus; InterPro: IPR010714 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the C terminus (approximately 500 residues) of the eukaryotic coatomer alpha subunit [, ]. This domain is found along with the IPR006692 from INTERPRO domain. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0005515 protein binding, 0006886 intracellular protein transport, 0016192 vesicle-mediated transport, 0030126 COPI vesicle coat; PDB: 3MKR_B 3MV2_E 3MKQ_B 3MV3_A.
Probab=36.49 E-value=1.3e+02 Score=31.99 Aligned_cols=31 Identities=23% Similarity=0.473 Sum_probs=26.3
Q ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Q 003563 32 GVTKMLGEASLQYAYGNFEQAISLLKEVVRL 62 (810)
Q Consensus 32 ~~~~~l~~a~~~~~~g~~~~A~~~~~~~l~~ 62 (810)
.+...+..|..++..|+|.+|+..|+.+|..
T Consensus 203 ~L~~~Lk~gyk~~t~gKF~eA~~~Fr~iL~~ 233 (422)
T PF06957_consen 203 SLEERLKEGYKLFTAGKFEEAIEIFRSILHS 233 (422)
T ss_dssp HHHHHHHHHHHHHHTT-HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhcCCHHHHHHHHHHHHHH
Confidence 4556688999999999999999999999875
No 480
>KOG0128 consensus RNA-binding protein SART3 (RRM superfamily) [RNA processing and modification]
Probab=36.02 E-value=7.6e+02 Score=28.77 Aligned_cols=259 Identities=11% Similarity=0.027 Sum_probs=134.6
Q ss_pred HHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHH---cCChHHHHHHHH
Q 003563 117 TAQAMYYIRQAIRAEPKDISLRIHLASFYVEIGDYEKAAESYEQIQKLFPDNVDATKTGAQLFLK---CGQTARSIGILE 193 (810)
Q Consensus 117 ~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~---~g~~~~A~~~~~ 193 (810)
-++=+..++.-+.+++.+......|..++...|++++-...-.++.++.|..+..|.....-... .+...++...|+
T Consensus 95 ~~~ei~t~~ee~ai~~y~~~~~v~Li~llrk~~dl~kl~~ar~~~~~~~pl~~~lWl~Wl~d~~~mt~s~~~~~v~~~~e 174 (881)
T KOG0128|consen 95 GNQEIRTLEEELAINSYKYAQMVQLIGLLRKLGDLEKLRQARLEMSEIAPLPPHLWLEWLKDELSMTQSEERKEVEELFE 174 (881)
T ss_pred chhHHHHHHHHhcccccchHHHHHHHHHHHHhcchHHHHHHHHHHHHhcCCChHHHHHHHHHHHhhccCcchhHHHHHHH
Confidence 33444445555555555555666666666666666666666666666666666555544332221 244455555566
Q ss_pred HHHhhCCCCCChHHHHHHHHH-------HHHcCCHHHHHHHHHHHHHHhcCC---CCCcHHHHHHHHHHHHhcCCHHHHH
Q 003563 194 EYLKVHPSDADLSVIDLLVAI-------LMENNAYEKTLQHIEHAQIVRFSG---KELPLKLKVKAGICYLRLGNMEKAE 263 (810)
Q Consensus 194 ~~l~~~p~~~~~~~~~~la~~-------~~~~g~~~~A~~~~~~~~~~~~~~---~~~~~~~~~~la~~~~~~g~~~~A~ 263 (810)
+++...-.-+ +|...+.. +...++++.....|.+++...+.. ....+.++...-..+...-..++-+
T Consensus 175 kal~dy~~v~---iw~e~~~y~~~~~~~~~~~~d~k~~R~vf~ral~s~g~~~t~G~~~we~~~E~e~~~l~n~~~~qv~ 251 (881)
T KOG0128|consen 175 KALGDYNSVP---IWEEVVNYLVGFGNVAKKSEDYKKERSVFERALRSLGSHITEGAAIWEMYREFEVTYLCNVEQRQVI 251 (881)
T ss_pred HHhcccccch---HHHHHHHHHHhccccccccccchhhhHHHHHHHhhhhhhhcccHHHHHHHHHHHHHHHHhHHHHHHH
Confidence 6554322211 22222222 233455666666666666543211 1112233444444444444445555
Q ss_pred HHHHHhhccCCchh--HhHHHHHH--H-HHHHcCCcHHHHHHHHH-------HHhccCCCCHHHHHHHHHHHHHccCHHH
Q 003563 264 ILFADLQWKNAIDH--ADLITEVA--D-TLMSLGHSNSALKYYHF-------LETNAGTDNGYLYLKLAECYLSLKERAH 331 (810)
Q Consensus 264 ~~~~~~~~~~~~~~--~~~~~~la--~-~~~~~~~~~~A~~~~~~-------~~~~~~~~~~~~~~~la~~~~~~g~~~~ 331 (810)
.++...+...-..+ ...+.... . ......+++.|+..+.+ .+.. .+.....|..+-......|++..
T Consensus 252 a~~~~el~~~~D~~~~~~~~~~~sk~h~~~~~~~~~~~a~~~l~~~~~~~e~~~q~-~~~~~q~~~~yidfe~~~G~p~r 330 (881)
T KOG0128|consen 252 ALFVRELKQPLDEDTRGWDLSEQSKAHVYDVETKKLDDALKNLAKILFKFERLVQK-EPIKDQEWMSYIDFEKKSGDPVR 330 (881)
T ss_pred HHHHHHHhccchhhhhHHHHHHHHhcchHHHHhccHHHHHHHHHHHHHHHHHHhhh-hHHHHHHHHHHHHHHHhcCCchH
Confidence 55555433221000 11111111 1 11233445555544333 3322 34455567777777888999988
Q ss_pred HHHHHHHHHhhcCCCHHHHHHHHHHHH-HcCCHHHHHHhcCCCCCCCcc
Q 003563 332 AIMFFYKALDRFEDNIDARLTLASLLL-EEAKEEEAITLLSPPKDLDSL 379 (810)
Q Consensus 332 A~~~~~~al~~~p~~~~~~~~la~~~~-~~g~~~~A~~~~~~a~~~~~~ 379 (810)
-...+++++...+.+.+.|...+...- .++-.+.+...+.++....|-
T Consensus 331 i~l~~eR~~~E~~~~~~~wi~y~~~~d~eLkv~~~~~~~~~ra~R~cp~ 379 (881)
T KOG0128|consen 331 IQLIEERAVAEMVLDRALWIGYGVYLDTELKVPQRGVSVHPRAVRSCPW 379 (881)
T ss_pred HHHHHHHHHHhccccHHHHhhhhhhcccccccccccccccchhhcCCch
Confidence 888999999999988888888775543 334445555555556555553
No 481
>smart00671 SEL1 Sel1-like repeats. These represent a subfamily of TPR (tetratricopeptide repeat) sequences.
Probab=34.63 E-value=91 Score=19.03 Aligned_cols=27 Identities=22% Similarity=0.244 Sum_probs=12.9
Q ss_pred HHHHHHHHHHHc----CChHHHHHHHHHHHh
Q 003563 69 TYNTLGLAHSAL----GNHKSAFDFYVIAAH 95 (810)
Q Consensus 69 ~~~~l~~~~~~~----g~~~~A~~~~~~a~~ 95 (810)
+.+.+|.+|..- .+..+|..+++++.+
T Consensus 3 a~~~lg~~~~~G~g~~~d~~~A~~~~~~Aa~ 33 (36)
T smart00671 3 AQYNLGQMYEYGLGVKKDLEKALEYYKKAAE 33 (36)
T ss_pred HHHHHHHHHHcCCCCCcCHHHHHHHHHHHHH
Confidence 444555554421 245555555555543
No 482
>KOG0292 consensus Vesicle coat complex COPI, alpha subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=34.31 E-value=5.1e+02 Score=30.29 Aligned_cols=33 Identities=21% Similarity=0.315 Sum_probs=27.7
Q ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCC
Q 003563 32 GVTKMLGEASLQYAYGNFEQAISLLKEVVRLSP 64 (810)
Q Consensus 32 ~~~~~l~~a~~~~~~g~~~~A~~~~~~~l~~~p 64 (810)
.+..-+..|..+...|++.+|++.|+.++-.-|
T Consensus 990 ~l~~kl~~gy~ltt~gKf~eAie~Frsii~~i~ 1022 (1202)
T KOG0292|consen 990 QLNKKLQKGYKLTTEGKFGEAIEKFRSIIYSIP 1022 (1202)
T ss_pred HHHHHHHHHHhhhccCcHHHHHHHHHHHHhhee
Confidence 356678899999999999999999999986544
No 483
>smart00101 14_3_3 14-3-3 homologues. 14-3-3 homologues mediates signal transduction by binding to phosphoserine-containing proteins. They are involved in growth factor signalling and also interact with MEK kinases.
Probab=34.24 E-value=4.6e+02 Score=25.69 Aligned_cols=57 Identities=16% Similarity=0.236 Sum_probs=41.2
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHh-CC--CChHHHHHHHHHHHH-cCChHHHHHHHHH
Q 003563 36 MLGEASLQYAYGNFEQAISLLKEVVRL-SP--NLPETYNTLGLAHSA-LGNHKSAFDFYVI 92 (810)
Q Consensus 36 ~l~~a~~~~~~g~~~~A~~~~~~~l~~-~p--~~~~~~~~l~~~~~~-~g~~~~A~~~~~~ 92 (810)
++..|...-+.|+|++.+...+++++. +| -+.+-...+..+|-. .|....+...+..
T Consensus 4 ~v~~Aklaeq~eRyddm~~~mk~~~~~~~~~eLt~EERnLLSvayKn~i~~~R~s~R~i~s 64 (244)
T smart00101 4 NVYMAKLAEQAERYEEMVEFMEKVAKTVDSEELTVEERNLLSVAYKNVIGARRASWRIISS 64 (244)
T ss_pred HHHHHHHHHHhcCHHHHHHHHHHHHhhcCCccCCHHHHHHHHHHHhhhhcccHHHHHHHhH
Confidence 455677788889999999999998886 44 356667777777754 5666667666655
No 484
>KOG4279 consensus Serine/threonine protein kinase [Signal transduction mechanisms]
Probab=34.05 E-value=1.1e+02 Score=34.38 Aligned_cols=102 Identities=13% Similarity=0.078 Sum_probs=50.9
Q ss_pred hHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhcCCC--CCcHHHHHHHHHHHH---hcCCHHHHHHHHHHhhccCCchhHh
Q 003563 205 LSVIDLLVAILMENNAYEKTLQHIEHAQIVRFSGK--ELPLKLKVKAGICYL---RLGNMEKAEILFADLQWKNAIDHAD 279 (810)
Q Consensus 205 ~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~--~~~~~~~~~la~~~~---~~g~~~~A~~~~~~~~~~~~~~~~~ 279 (810)
+.+..++...|....+|+.-++..+....+ |... .....+.+..+.++- +-|+-++|+...-.+++...+..++
T Consensus 201 ~d~V~nlmlSyRDvQdY~amirLVe~Lk~i-P~t~~vve~~nv~f~YaFALNRRNr~GDRakAL~~~l~lve~eg~vapD 279 (1226)
T KOG4279|consen 201 PDTVSNLMLSYRDVQDYDAMIRLVEDLKRI-PDTLKVVETHNVRFHYAFALNRRNRPGDRAKALNTVLPLVEKEGPVAPD 279 (1226)
T ss_pred HHHHHHHHhhhccccchHHHHHHHHHHHhC-cchhhhhccCceEEEeeehhcccCCCccHHHHHHHHHHHHHhcCCCCCc
Confidence 344555666666666676666666655444 2100 000111122222222 2355666666666655544444566
Q ss_pred HHHHHHHHHHH---------cCCcHHHHHHHHHHHhc
Q 003563 280 LITEVADTLMS---------LGHSNSALKYYHFLETN 307 (810)
Q Consensus 280 ~~~~la~~~~~---------~~~~~~A~~~~~~~~~~ 307 (810)
.+...|++|.. .+..+.|+++|+++.+.
T Consensus 280 m~Cl~GRIYKDmF~~S~ytDa~s~~~a~~WyrkaFev 316 (1226)
T KOG4279|consen 280 MYCLCGRIYKDMFIASNYTDAESLNHAIEWYRKAFEV 316 (1226)
T ss_pred eeeeechhhhhhhhccCCcchhhHHHHHHHHHHHhcc
Confidence 66666666632 23345566666666654
No 485
>cd02678 MIT_VPS4 MIT: domain contained within Microtubule Interacting and Trafficking molecules. This sub-family of MIT domains is found in intracellular protein transport proteins of the AAA-ATPase family. The molecular function of the MIT domain is unclear.
Probab=33.98 E-value=1e+02 Score=23.48 Aligned_cols=30 Identities=20% Similarity=0.362 Sum_probs=20.8
Q ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Q 003563 32 GVTKMLGEASLQYAYGNFEQAISLLKEVVR 61 (810)
Q Consensus 32 ~~~~~l~~a~~~~~~g~~~~A~~~~~~~l~ 61 (810)
.+..++.+|...-..|++++|+.+|.++++
T Consensus 5 ~A~~l~~~Av~~D~~g~y~eA~~~Y~~aie 34 (75)
T cd02678 5 KAIELVKKAIEEDNAGNYEEALRLYQHALE 34 (75)
T ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 344566677777777777777777777654
No 486
>PF09205 DUF1955: Domain of unknown function (DUF1955); InterPro: IPR015288 Members of this family are found in hypothetical proteins synthesised by the Archaeal organism Sulfolobus. Their exact function has not, as yet, been determined. ; PDB: 1WY6_A.
Probab=33.34 E-value=3.2e+02 Score=23.71 Aligned_cols=56 Identities=16% Similarity=0.230 Sum_probs=39.7
Q ss_pred HHHHHcCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Q 003563 109 TFAVQKGDTAQAMYYIRQAIRAEPKDISLRIHLASFYVEIGDYEKAAESYEQIQKL 164 (810)
Q Consensus 109 ~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~ 164 (810)
.....+|+-++-.+.+....+....++..+..+|.+|.+.|+..+|-+.+.++-+.
T Consensus 94 d~lv~~~kkDqLdki~~~l~kn~~~~p~~L~kia~Ay~klg~~r~~~ell~~ACek 149 (161)
T PF09205_consen 94 DILVKQGKKDQLDKIYNELKKNEEINPEFLVKIANAYKKLGNTREANELLKEACEK 149 (161)
T ss_dssp HHHHHTT-HHHHHHHHHHH-----S-HHHHHHHHHHHHHTT-HHHHHHHHHHHHHT
T ss_pred HHHHHhccHHHHHHHHHHHhhccCCCHHHHHHHHHHHHHhcchhhHHHHHHHHHHh
Confidence 45567788887777887777656667888999999999999999999999888764
No 487
>PF08771 Rapamycin_bind: Rapamycin binding domain; InterPro: IPR009076 Rapamycin and FK506 are potent immunosuppressive agents that bind to the FK506-binding protein (FKBP12), inhibiting its peptidyl-prolyl isomerase activity. The rapamycin-FKBP12 complex can then bind to and inhibit the FKBP12-rapamycin-associated protein (FRAP) in humans and RAFT1 in rats, causing cell-cycle arrest []. The FK506-FKBP12 complex cannot bind FRAP, but can bind to and inhibit calcineurin. Rapamycin is able to bind to two proteins, FKBP12 and FRAP, by simultaneously occupying two hydrophobic binding pockets, thereby linking these two proteins together to form a dimer []. The structure of the FKBP12-rapamycin-binding domain of FRAP consists of a core bundle of four helices arranged up-and-down in a left-handed twist. FRAP has been shown to interact in vitro with CLIP-170, a protein involved in microtubule organisation and function []. FRAP is thought to act as a kinase to phosphorylate CLIP-170, thereby regulating its binding to microtubules. FRAP is also thought to cooperate with p85/p110 phosphatidylinositol 3-kinase (PI3K) to induce the activation of the serine/threonine kinase p70 S6 kinase (p70S6K), which in turn phosphorylates the 40S ribosomal protein S6, thereby altering the translation of ribosomal proteins and translation elongation factors [].; GO: 0016772 transferase activity, transferring phosphorus-containing groups; PDB: 2NPU_A 2RSE_B 4FAP_B 1AUE_A 2GAQ_A 1FAP_B 2FAP_B 3FAP_B 1NSG_B.
Probab=32.92 E-value=1.9e+02 Score=23.65 Aligned_cols=87 Identities=15% Similarity=0.077 Sum_probs=56.5
Q ss_pred CchhhHHHHHHHHHHHHhhhcHHHHHHHHHHHHhhhhccCChhHHHHHHHhhhhhhccccCCchhHHHHHHHHHhC-CCC
Q 003563 527 KNEENQCLIIDLCKALASLQRYEEASEIINLSMRLAYNILPLEKKEELRSLGAKMAYDSTDPNHGFDCAKYILQLH-PYS 605 (810)
Q Consensus 527 ~~~~~~~~~~~~~~~~~~~~~~~eA~~~~~~al~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~a~~~~r~~~~~~-p~~ 605 (810)
-.+-|++.+-+-+..+...++.+....+++.....-. .+|++.....|.. ..+.+...|.++++...... ..+
T Consensus 9 W~E~W~~~Le~As~~y~~~~n~~~m~~~L~pLh~~l~--k~PeT~~E~~F~~----~fg~~L~~A~~~~~~y~~t~~~~~ 82 (100)
T PF08771_consen 9 WHELWYEALEEASRLYFGENNVEKMFKILEPLHEMLE--KGPETLREVSFAQ----AFGRDLQEAREWLKRYERTGDETD 82 (100)
T ss_dssp HHHHHHHHHHHHHHHHHTTT-HHHHHHHHHHHHHHHH--HS-SSHHHHHHHH----HHHHHHHHHHHHHHHHHHH--HHH
T ss_pred HHHHHHHHHHHHHHHHHhhcCHHHHHHHHHHHHHHHc--CCCCCHHHHHHHH----HHHHHHHHHHHHHHHHhhhCCHhh
Confidence 3456888888888888899999999888877654322 1344444555444 24456778888887776542 222
Q ss_pred -hhHhHHHHHHHHhh
Q 003563 606 -LSAWNCYYKVLSRM 619 (810)
Q Consensus 606 -~~~~~~~~~~~~~~ 619 (810)
..+|.+|..|+.+.
T Consensus 83 l~~aW~~y~~v~~~i 97 (100)
T PF08771_consen 83 LNQAWDIYYQVYRRI 97 (100)
T ss_dssp HHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHH
Confidence 56899998877654
No 488
>cd02684 MIT_2 MIT: domain contained within Microtubule Interacting and Trafficking molecules. This sub-family of MIT domains is found in proteins with an n-terminal serine/threonine kinase domain. The molecular function of the MIT domain is unclear.
Probab=32.65 E-value=1.1e+02 Score=23.46 Aligned_cols=30 Identities=17% Similarity=0.174 Sum_probs=21.1
Q ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Q 003563 32 GVTKMLGEASLQYAYGNFEQAISLLKEVVR 61 (810)
Q Consensus 32 ~~~~~l~~a~~~~~~g~~~~A~~~~~~~l~ 61 (810)
.+..++.+|...-..|+|++|+.+|..+++
T Consensus 5 ~Ai~lv~~Av~~D~~g~y~eA~~lY~~ale 34 (75)
T cd02684 5 KAIALVVQAVKKDQRGDAAAALSLYCSALQ 34 (75)
T ss_pred HHHHHHHHHHHHHHhccHHHHHHHHHHHHH
Confidence 344566677777777778777777777665
No 489
>TIGR00985 3a0801s04tom mitochondrial import receptor subunit translocase of outer membrane 20 kDa subunit.
Probab=32.64 E-value=1e+02 Score=27.19 Aligned_cols=43 Identities=19% Similarity=0.310 Sum_probs=32.9
Q ss_pred hHHHHHHHHhcCCCCCchhhhcchhhhcc-chHHHHHHHHHHHhhCCCChHHHHHH
Q 003563 630 SKFIRYLRAKYKDCVPPIIISGHQFTMAS-HHQDAARCYLEAYKLLPENPLINLCV 684 (810)
Q Consensus 630 ~~~~~~~~~~~p~~~~~~~~~g~~~~~~~-~~~~Ai~~y~~a~~~~p~~p~~~l~l 684 (810)
+.||++.+.. |..+...| ++.+|+.+|-+|+..+|+ |--.+.+
T Consensus 87 E~~Fl~eV~~-----------GE~L~~~g~~~~ega~hf~nAl~Vc~q-P~~LL~i 130 (148)
T TIGR00985 87 EAFFLQEVQL-----------GEELMAQGTNVDEGAVHFYNALKVYPQ-PQQLLSI 130 (148)
T ss_pred HHHHHHHHHH-----------HHHHHhCCCchHHHHHHHHHHHHhCCC-HHHHHHH
Confidence 5566665553 88888888 899999999999999995 6555443
No 490
>KOG4563 consensus Cell cycle-regulated histone H1-binding protein [Chromatin structure and dynamics; Cell cycle control, cell division, chromosome partitioning]
Probab=32.61 E-value=83 Score=32.15 Aligned_cols=58 Identities=16% Similarity=0.178 Sum_probs=41.7
Q ss_pred CCHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC--------CCChHHHHHHHHHHHHcCChHHH
Q 003563 29 LSPGVTKMLGEASLQYAYGNFEQAISLLKEVVRLS--------PNLPETYNTLGLAHSALGNHKSA 86 (810)
Q Consensus 29 ~~~~~~~~l~~a~~~~~~g~~~~A~~~~~~~l~~~--------p~~~~~~~~l~~~~~~~g~~~~A 86 (810)
....+..++..|+.++..++++.|...|..+..+. -++.++++..|..++..++....
T Consensus 37 ~~~~~e~lv~~G~~~~~~~d~~~Avda~s~A~~l~~ei~Ge~~~e~~eal~~YGkslLela~~e~~ 102 (400)
T KOG4563|consen 37 KEKTLEELVQAGRRALCNNDIDKAVDALSEATELSDEIYGEKHLETFEALFLYGKSLLELAKEESQ 102 (400)
T ss_pred HHHHHHHHHHhhhHHHhcccHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44567888999999999999999999999887652 22445566666666665555443
No 491
>PF00637 Clathrin: Region in Clathrin and VPS; InterPro: IPR000547 Proteins synthesized on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. These vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transport []. Clathrin coats contain both clathrin (acts as a scaffold) and adaptor complexes that link clathrin to receptors in coated vesicles. Clathrin-associated protein complexes are believed to interact with the cytoplasmic tails of membrane proteins, leading to their selection and concentration. The two major types of clathrin adaptor complexes are the heterotetrameric adaptor protein (AP) complexes, and the monomeric GGA (Golgi-localising, Gamma-adaptin ear domain homology, ARF-binding proteins) adaptors [, ]. Clathrin is a trimer composed of three heavy chains and three light chains, each monomer projecting outwards like a leg; this three-legged structure is known as a triskelion [, ]. The heavy chains form the legs, their N-terminal beta-propeller regions extending outwards, while their C-terminal alpha-alpha-superhelical regions form the central hub of the triskelion. Peptide motifs can bind between the beta-propeller blades. The light chains appear to have a regulatory role, and may help orient the assembly and disassembly of clathrin coats as they interact with hsc70 uncoating ATPase []. Clathrin triskelia self-polymerise into a curved lattice by twisting individual legs together. The clathrin lattice forms around a vesicle as it buds from the TGN, plasma membrane or endosomes, acting to stabilise the vesicle and facilitate the budding process []. The multiple blades created when the triskelia polymerise are involved in multiple protein interactions, enabling the recruitment of different cargo adaptors and membrane attachment proteins []. This entry represents the 7-fold alpha-alpha-superhelical ARM-type repeat found at the C-terminal of clathrin heavy chains and in VPS (vacuolar protein sorting-associated) proteins. In clathrin heavy chains, the C-terminal 7-fold ARM-type repeats interact to form the central hub of the triskelion. VPS proteins are required for vacuolar assembly and vacuolar traffick, and contain one clathrin-type repeat []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0006886 intracellular protein transport, 0016192 vesicle-mediated transport; PDB: 3LVH_A 3LVG_C 1B89_A 3QIL_L.
Probab=32.31 E-value=7 Score=34.54 Aligned_cols=117 Identities=12% Similarity=0.060 Sum_probs=0.0
Q ss_pred HHHHHHHcCCcHHHHHHHHHHHhccCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHhhcCCC-------HHHHHHHHHH
Q 003563 284 VADTLMSLGHSNSALKYYHFLETNAGTDNGYLYLKLAECYLSLKERAHAIMFFYKALDRFEDN-------IDARLTLASL 356 (810)
Q Consensus 284 la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~-------~~~~~~la~~ 356 (810)
+...+.+.+.......+++.+.......++.....++.+|.+.+++++...+++..-..++.. ...+.....+
T Consensus 13 vi~~~~~~~~~~~l~~yLe~~~~~~~~~~~~~~~~L~~ly~~~~~~~~l~~~L~~~~~yd~~~~~~~c~~~~l~~~a~~L 92 (143)
T PF00637_consen 13 VISAFEERNQPEELIEYLEALVKENKENNPDLHTLLLELYIKYDPYEKLLEFLKTSNNYDLDKALRLCEKHGLYEEAVYL 92 (143)
T ss_dssp CHHHCTTTT-GGGCTCCHHHHHHTSTC-SHHHHHHHHHHHHCTTTCCHHHHTTTSSSSS-CTHHHHHHHTTTSHHHHHHH
T ss_pred HHHHHHhCCCHHHHHHHHHHHHhcccccCHHHHHHHHHHHHhcCCchHHHHHcccccccCHHHHHHHHHhcchHHHHHHH
Q ss_pred HHHcCCHHHHHH------hcCCCCCCCcccCCCCCCChhhhHHHHHHHHHHHHHhcCCch
Q 003563 357 LLEEAKEEEAIT------LLSPPKDLDSLDMNSDKSNPWWLNEKIIMKLCHIYRAKGMPE 410 (810)
Q Consensus 357 ~~~~g~~~~A~~------~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~ 410 (810)
|.+.|++++|+. .++.+.+....... ++++..++..+...++..
T Consensus 93 y~~~~~~~~al~i~~~~~~~~~a~e~~~~~~~----------~~l~~~l~~~~l~~~~~~ 142 (143)
T PF00637_consen 93 YSKLGNHDEALEILHKLKDYEEAIEYAKKVDD----------PELWEQLLKYCLDSKPFN 142 (143)
T ss_dssp HHCCTTHTTCSSTSSSTHCSCCCTTTGGGCSS----------SHHHHHHHHHHCTSTCTC
T ss_pred HHHcccHHHHHHHHHHHccHHHHHHHHHhcCc----------HHHHHHHHHHHHhcCccc
No 492
>PRK15490 Vi polysaccharide biosynthesis protein TviE; Provisional
Probab=32.24 E-value=2.9e+02 Score=30.87 Aligned_cols=57 Identities=16% Similarity=0.058 Sum_probs=32.4
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHcCCHHHHHHHHH
Q 003563 101 SALWKQLLTFAVQKGDTAQAMYYIRQAIRAEPKDISLRIHLASFYVEIGDYEKAAESYE 159 (810)
Q Consensus 101 ~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~ 159 (810)
......-|..+-..|..++|-.+|++.+..+|+ ..++..+.-+.+.|-...|...++
T Consensus 42 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~ 98 (578)
T PRK15490 42 SLAMLKKAEFLHDVNETERAYALYETLIAQNND--EARYEYARRLYNTGLAKDAQLILK 98 (578)
T ss_pred HHHHHHHhhhhhhhhhhHhHHHHHHHHHHhCCc--chHHHHHHHHHhhhhhhHHHHHHH
Confidence 333444455555556666666666666665555 445555555666666666655555
No 493
>TIGR02710 CRISPR-associated protein, TIGR02710 family. Members of this family are found, exclusively in the vicinity of CRISPR repeats and other CRISPR-associated (cas) genes, in Methanothermobacter thermautotrophicus (Archaea), Thermus thermophilus (Deinococcus-Thermus), Chloroflexus aurantiacus (Chloroflexi), and Thermomicrobium roseum (Thermomicrobia).
Probab=32.15 E-value=6.3e+02 Score=26.65 Aligned_cols=54 Identities=7% Similarity=-0.104 Sum_probs=33.9
Q ss_pred HHHHHHHcCChHHHHHHHHHHHhcCCCC-----HHHHHHH--HHHHHHcCCHHHHHHHHHH
Q 003563 73 LGLAHSALGNHKSAFDFYVIAAHLSPKD-----SALWKQL--LTFAVQKGDTAQAMYYIRQ 126 (810)
Q Consensus 73 l~~~~~~~g~~~~A~~~~~~a~~~~p~~-----~~~~~~l--a~~~~~~g~~~~A~~~~~~ 126 (810)
.+.-++..++|..|...|..+....++. ...+..+ |..++..-++++|..++++
T Consensus 136 ~~r~l~n~~dy~aA~~~~~~L~~r~l~~~~~~~~~~~~~l~~~y~~WD~fd~~~A~~~L~~ 196 (380)
T TIGR02710 136 YARRAINAFDYLFAHARLETLLRRLLSAVNHTFYEAMIKLTRAYLHWDRFEHEEALDYLND 196 (380)
T ss_pred HHHHHHHhcChHHHHHHHHHHHhcccChhhhhHHHHHHHHHHHHHHHHccCHHHHHHHHhh
Confidence 3445677888888888888887664321 1223333 3344566777778777775
No 494
>PF12309 KBP_C: KIF-1 binding protein C terminal; InterPro: IPR022083 This family of proteins is found in bacteria and eukaryotes. Proteins in this family are typically between 365 and 621 amino acids in length. There is a conserved LLP sequence motif. KBP is a binding partner for KIF1Balpha that is a regulator of its transport function and thus represents a type of kinesin interacting protein.
Probab=32.08 E-value=1.1e+02 Score=32.11 Aligned_cols=53 Identities=23% Similarity=0.266 Sum_probs=39.7
Q ss_pred HHHHHHHHHHHHhHhh--cCCC---------------chhhhhHHHHHHHh---------ChhhHHHHHHHHHhccccc
Q 003563 702 QCLAQGFAFLYNNLRL--CEHS---------------QEALYNIARACHHV---------GLVSLAASYYEKVLAIKEK 754 (810)
Q Consensus 702 ~~~~q~~~~l~~y~~~--~~~~---------------~e~~ynlgr~~~~l---------g~~~~Ai~~Y~~vL~~~~~ 754 (810)
..+.+++.++..|.+. .+++ .-++|++||+|.++ +....++.+|+.+.+.-.+
T Consensus 263 ~l~~~ai~~y~~fl~s~~~~~~~~~~~~~~~d~~~~~l~a~f~~arl~~K~~~~~~~~~~~~l~~sl~~y~~vv~y~~~ 341 (371)
T PF12309_consen 263 QLCSKAIKYYQKFLDSYKSPDSGKLPEKLDEDELRPYLYAYFHIARLYSKLITSDPKEQLENLEKSLEYYKWVVDYCEK 341 (371)
T ss_pred HHHHHHHHHHHHHHHHHcCCccccCCCCCcHHHHHHHHHHHHHHHHHHccccCCChHHHHHHHHHHHHHHHHHHHHHHh
Confidence 4577888777777554 2221 56799999999776 7788999999999988654
No 495
>TIGR03362 VI_chp_7 type VI secretion-associated protein, VC_A0119 family. This protein family is one of two related families in type VI secretion systems that contain an ImpA-related N-terminal domain (pfam06812).
Probab=31.85 E-value=5.6e+02 Score=26.03 Aligned_cols=150 Identities=16% Similarity=0.133 Sum_probs=76.2
Q ss_pred HcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCChHHHHHHHHHH----HhhCCCCCChHHHHHHHHHHHHcCCH-
Q 003563 147 EIGDYEKAAESYEQIQKLFPDNVDATKTGAQLFLKCGQTARSIGILEEY----LKVHPSDADLSVIDLLVAILMENNAY- 221 (810)
Q Consensus 147 ~~g~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~----l~~~p~~~~~~~~~~la~~~~~~g~~- 221 (810)
..+++.+.++..++.+..+|--.+..+..+.++.+.|. +.+...+..- ++.-|.- ..+.+..|..
T Consensus 111 ~~~~~~~Ll~~~E~sl~~~pfWLDgq~~~~qal~~lG~-~~~a~aI~~el~~fL~RlP~L---------~~L~F~DGtPF 180 (301)
T TIGR03362 111 AQADWAALLQRVEQSLSLAPFWLDGQRLSAQALERLGY-AAVAQAIRDELAAFLERLPGL---------LELKFSDGTPF 180 (301)
T ss_pred hCCCHHHHHHHHHHHHHhCchhhHHHHHHHHHHHHCCC-HHHHHHHHHHHHHHHHhCcCh---------hhcccCCCCCC
Confidence 55667777777777777777777777777888888773 4444333332 2223321 1111111111
Q ss_pred --HHHHHHHHHHHHHhc--------C-CCCCcHHHHHHHHHHHHhcCCHHHHHHHHHHhhcc--CCchhHhHHHHHHHHH
Q 003563 222 --EKTLQHIEHAQIVRF--------S-GKELPLKLKVKAGICYLRLGNMEKAEILFADLQWK--NAIDHADLITEVADTL 288 (810)
Q Consensus 222 --~~A~~~~~~~~~~~~--------~-~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~--~~~~~~~~~~~la~~~ 288 (810)
++...++.......+ . ...........-+......|..+.|+..++..+.. .+.+.....+.+++++
T Consensus 181 ad~~T~~WL~~~~~~~~~~~~~~~~~~~~~~~~~~~~~eA~~l~~~~gl~~Al~~L~~~~~~~~s~R~rf~~rL~~A~l~ 260 (301)
T TIGR03362 181 ADDETRAWLAQHATRSNAASVAPVAEVGEESDWEELREEARALAAEGGLEAALQRLQQRLAQAREPRERFHWRLLLARLL 260 (301)
T ss_pred CCHHHHHHHHhcccccccccccccccCcccccHHHHHHHHHHHHHcCCHHHHHHHHHhhcccCCChHHHHHHHHHHHHHH
Confidence 112222221100000 0 00011222223355566677777777777764332 2223344455667777
Q ss_pred HHcCCcHHHHHHHHHHHh
Q 003563 289 MSLGHSNSALKYYHFLET 306 (810)
Q Consensus 289 ~~~~~~~~A~~~~~~~~~ 306 (810)
...|.++-|..+|+.+..
T Consensus 261 ~~~g~~~lA~~ll~~L~~ 278 (301)
T TIGR03362 261 EQAGKAELAQQLYAALDQ 278 (301)
T ss_pred HHcCCHHHHHHHHHHHHH
Confidence 777777777777776554
No 496
>smart00745 MIT Microtubule Interacting and Trafficking molecule domain.
Probab=31.68 E-value=1.2e+02 Score=23.22 Aligned_cols=29 Identities=21% Similarity=0.440 Sum_probs=17.7
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Q 003563 33 VTKMLGEASLQYAYGNFEQAISLLKEVVR 61 (810)
Q Consensus 33 ~~~~l~~a~~~~~~g~~~~A~~~~~~~l~ 61 (810)
+..++.+|..+-..|++++|+.+|.++++
T Consensus 8 A~~li~~Av~~d~~g~~~eAl~~Y~~a~e 36 (77)
T smart00745 8 AKELISKALKADEAGDYEEALELYKKAIE 36 (77)
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 34455566666666666666666666554
No 497
>PF07219 HemY_N: HemY protein N-terminus; InterPro: IPR010817 This entry represents the N terminus (approximately 150 residues) of bacterial HemY porphyrin biosynthesis proteins. These are membrane protein involved in a late step of protoheme IX synthesis [].
Probab=31.55 E-value=2.1e+02 Score=23.68 Aligned_cols=46 Identities=26% Similarity=0.182 Sum_probs=31.2
Q ss_pred HHHHHHHHHcCChHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCC
Q 003563 71 NTLGLAHSALGNHKSAFDFYVIAAHLSPKDSALWKQLLTFAVQKGD 116 (810)
Q Consensus 71 ~~l~~~~~~~g~~~~A~~~~~~a~~~~p~~~~~~~~la~~~~~~g~ 116 (810)
...|.+....||+..|.+...++.+..+..+-.+..-|.....+||
T Consensus 63 l~~Gl~al~~G~~~~A~k~~~~a~~~~~~~~l~~L~AA~AA~~~gd 108 (108)
T PF07219_consen 63 LSRGLIALAEGDWQRAEKLLAKAAKLSDNPLLNYLLAARAAQAQGD 108 (108)
T ss_pred HHHHHHHHHCCCHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCC
Confidence 3446677778899999999888877655544455555666666554
No 498
>PRK15490 Vi polysaccharide biosynthesis protein TviE; Provisional
Probab=30.91 E-value=2.9e+02 Score=30.86 Aligned_cols=79 Identities=23% Similarity=0.226 Sum_probs=58.8
Q ss_pred HcCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCChHHHHHHH
Q 003563 113 QKGDTAQAMYYIRQAIRAEPKDISLRIHLASFYVEIGDYEKAAESYEQIQKLFPDNVDATKTGAQLFLKCGQTARSIGIL 192 (810)
Q Consensus 113 ~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~~ 192 (810)
+....+++....+.-+..........+..+..+...|..++|-.+|++.+..+|+ ..++..+.-+.+.|-...|...+
T Consensus 20 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~ 97 (578)
T PRK15490 20 QEKKLAQAVALIDSELPTEALTSLAMLKKAEFLHDVNETERAYALYETLIAQNND--EARYEYARRLYNTGLAKDAQLIL 97 (578)
T ss_pred HHhhHHHHHHHHHHhCCccchhHHHHHHHhhhhhhhhhhHhHHHHHHHHHHhCCc--chHHHHHHHHHhhhhhhHHHHHH
Confidence 4445566665655554444444556677788888889999999999999998887 66777888888888888888877
Q ss_pred H
Q 003563 193 E 193 (810)
Q Consensus 193 ~ 193 (810)
.
T Consensus 98 ~ 98 (578)
T PRK15490 98 K 98 (578)
T ss_pred H
Confidence 7
No 499
>COG4941 Predicted RNA polymerase sigma factor containing a TPR repeat domain [Transcription]
Probab=30.82 E-value=6e+02 Score=26.04 Aligned_cols=29 Identities=17% Similarity=0.174 Sum_probs=17.1
Q ss_pred HHHHHHHHHHHhcCCCCHHHHHHHHHHHH
Q 003563 84 KSAFDFYVIAAHLSPKDSALWKQLLTFAV 112 (810)
Q Consensus 84 ~~A~~~~~~a~~~~p~~~~~~~~la~~~~ 112 (810)
++|+..-.-...+-|..++++-.++.+.+
T Consensus 213 ~EairLgRll~~L~p~EPE~~GL~ALmll 241 (415)
T COG4941 213 DEAIRLGRLLARLLPGEPEALGLLALMLL 241 (415)
T ss_pred HHHHHHHHHHHHHcCCChHHHHHHHHHHH
Confidence 35555555556666666666655555544
No 500
>PF08311 Mad3_BUB1_I: Mad3/BUB1 homology region 1; InterPro: IPR013212 Proteins containing this domain are checkpoint proteins involved in cell division. This region has been shown to be essential for the binding of BUB1 and MAD3 to CDC20p [].; PDB: 3ESL_B 4AEZ_I 4A1G_B 2LAH_A 2WVI_A 3SI5_B.
Probab=30.62 E-value=3.5e+02 Score=23.22 Aligned_cols=120 Identities=14% Similarity=-0.020 Sum_probs=0.0
Q ss_pred hHHHHHHHHHHHhhCC-CCCChHHHHHHHHHHHHc----CCHHHHHHHHHHHHHHhcCCCCCcHHHHHHHHHHHHhcCCH
Q 003563 185 TARSIGILEEYLKVHP-SDADLSVIDLLVAILMEN----NAYEKTLQHIEHAQIVRFSGKELPLKLKVKAGICYLRLGNM 259 (810)
Q Consensus 185 ~~~A~~~~~~~l~~~p-~~~~~~~~~~la~~~~~~----g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~ 259 (810)
.++-...|+..+.... .+.....|.......... +.-..-...+++++..+..+.....+.++....+....-..
T Consensus 1 ~~~~r~~~e~~i~~~~~~dDPL~~w~~yI~w~~~~~p~~~~~~~L~~lLer~~~~f~~~~~Y~nD~RylkiWi~ya~~~~ 80 (126)
T PF08311_consen 1 LEQQRQEFEEQIRSYEEGDDPLDPWLRYIKWIEENYPSGGKQSGLLELLERCIRKFKDDERYKNDERYLKIWIKYADLSS 80 (126)
T ss_dssp -HHHHHHHHHHHHCCGGSS-CHHHHHHHHHHHHHHCTTCCCCHHHHHHHHHHHHHHTTSGGGTT-HHHHHHHHHHHTTBS
T ss_pred CHHHHHHHHHHHHHccCCCCChHHHHHHHHHHHHHCCCCCchhHHHHHHHHHHHHHhhhHhhcCCHHHHHHHHHHHHHcc
Q ss_pred HHHHHHHHHhhc-cCCchhHhHHHHHHHHHHHcCCcHHHHHHHHHHH
Q 003563 260 EKAEILFADLQW-KNAIDHADLITEVADTLMSLGHSNSALKYYHFLE 305 (810)
Q Consensus 260 ~~A~~~~~~~~~-~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~ 305 (810)
.+..+|..+.. .-....+..|...|..+...|++++|.++|+..+
T Consensus 81 -~~~~if~~l~~~~IG~~~A~fY~~wA~~le~~~~~~~A~~I~~~Gi 126 (126)
T PF08311_consen 81 -DPREIFKFLYSKGIGTKLALFYEEWAEFLEKRGNFKKADEIYQLGI 126 (126)
T ss_dssp -HHHHHHHHHHHHTTSTTBHHHHHHHHHHHHHTT-HHHHHHHHHHHH
T ss_pred -CHHHHHHHHHHcCccHHHHHHHHHHHHHHHHcCCHHHHHHHHHhhC
Done!