Query 003563
Match_columns 810
No_of_seqs 1330 out of 2993
Neff 10.8
Searched_HMMs 29240
Date Tue Mar 26 17:31:28 2013
Command hhsearch -i /local_scratch/syshi/lefta3m/003563.a3m -d /local_scratch/syshi/pdb70.hhm -v 0 -o /local_scratch/syshi/H1_1614-1618//hhsearch_pdb/003563hhsearch_pdb
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 2xpi_A Anaphase-promoting comp 1.0 1 1 315.8 36.5 367 32-420 83-468 (597)
2 1w3b_A UDP-N-acetylglucosamine 1.0 1 1 312.0 45.2 368 37-424 3-370 (388)
3 2xpi_A Anaphase-promoting comp 1.0 1 1 302.1 33.1 488 66-793 83-596 (597)
4 1w3b_A UDP-N-acetylglucosamine 1.0 1 1 300.0 40.5 328 73-420 5-332 (388)
5 2gw1_A Mitochondrial precursor 1.0 1 1 284.6 33.5 374 31-422 4-401 (514)
6 3fp2_A TPR repeat-containing p 1.0 1 1 277.9 32.5 367 32-423 24-408 (537)
7 3fp2_A TPR repeat-containing p 1.0 1 1 271.7 31.5 372 66-564 24-410 (537)
8 2y4t_A DNAJ homolog subfamily 1.0 1 1 268.0 42.1 329 26-361 19-377 (450)
9 2gw1_A Mitochondrial precursor 1.0 1 1 267.0 34.4 335 66-420 5-365 (514)
10 2y4t_A DNAJ homolog subfamily 1.0 1 1 265.3 35.2 339 47-405 6-375 (450)
No 1
>2xpi_A Anaphase-promoting complex subunit CUT9; cell cycle, TPR, ubiquitin ligase; 2.60A {Schizosaccharomyces pombe}
Probab=1.00 E-value=1 Score=315.80 Aligned_cols=367 Identities=12% Similarity=0.025 Sum_probs=208.2
Q ss_pred HHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHCCCCCHHHHHHHHHHH
Q ss_conf 89999999999998299899999999999839999489999999999859928999999999820999999999999999
Q 003563 32 GVTKMLGEASLQYAYGNFEQAISLLKEVVRLSPNLPETYNTLGLAHSALGNHKSAFDFYVIAAHLSPKDSALWKQLLTFA 111 (810)
Q Consensus 32 ~~~~~l~~a~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~p~~~~~~~~la~~~ 111 (810)
.+..+...+..+...|++++|+..+++++...|+ ...+..+|.++...|++++|+..+.+++.. |.++.++..++.++
T Consensus 83 ~~~~~~~~~~~~~~~g~~~~A~~~~~~~~~~~p~-~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~-~~~~~~~~~l~~~~ 160 (597)
T 2xpi_A 83 REDYLRLWRHDALMQQQYKCAAFVGEKVLDITGN-PNDAFWLAQVYCCTGDYARAKCLLTKEDLY-NRSSACRYLAAFCL 160 (597)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHCC-HHHHHHHHHHHHHTTCHHHHHHHHHHTCGG-GTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHCCC-CHHHHHHHHHHHHCCCHHHHHHHHHHHHCC-CCCHHHHHHHHHHH
T ss_conf 9999999999998745834799999999960899-357999999999747699999999987335-45650899999999
Q ss_pred HHCCCHHHHHHHHHHHHHCC----------------CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCCCCHHHHHHH
Q ss_conf 97499899999999999809----------------99977899999999980999899999999998699998999999
Q 003563 112 VQKGDTAQAMYYIRQAIRAE----------------PKDISLRIHLASFYVEIGDYEKAAESYEQIQKLFPDNVDATKTG 175 (810)
Q Consensus 112 ~~~g~~~~A~~~~~~al~~~----------------p~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~l 175 (810)
...|++++|+..|++..... |.+..++..+|.++...|++++|+..|+++++..|.+..++..+
T Consensus 161 ~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l 240 (597)
T 2xpi_A 161 VKLYDWQGALNLLGETNPFRKDEKNANKLLMQDGGIKLEASMCYLRGQVYTNLSNFDRAKECYKEALMVDAKCYEAFDQL 240 (597)
T ss_dssp HHTTCHHHHHHHHCSSCTTC----------CCCSSCCHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHH
T ss_pred HHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCCHHHHHHHHH
T ss_conf 98866999999984248863223234334321123512589999988999983998999999999997293256999999
Q ss_pred HHHHHHCCCHHHHHHH---HHHHHHHCCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHH
Q ss_conf 9999983994799999---9998851999999589999999999727999999999999998307998828889999999
Q 003563 176 AQLFLKCGQTARSIGI---LEEYLKVHPSDADLSVIDLLVAILMENNAYEKTLQHIEHAQIVRFSGKELPLKLKVKAGIC 252 (810)
Q Consensus 176 a~~~~~~g~~~~A~~~---~~~~l~~~p~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~la~~ 252 (810)
+.++...+....+... +......++... ...+..++..+...|++++|+..++++... +.....+..++.+
T Consensus 241 ~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~-~~~~~~~~~~~~~~g~~~~A~~~~~~~~~~-----~~~~~~~~~l~~~ 314 (597)
T 2xpi_A 241 VSNHLLTADEEWDLVLKLNYSTYSKEDAAFL-RSLYMLKLNKTSHEDELRRAEDYLSSINGL-----EKSSDLLLCKADT 314 (597)
T ss_dssp HHTTCSCHHHHHHHHHHSCTHHHHGGGHHHH-HHHHHTTSCTTTTHHHHHHHHHHHHTSTTG-----GGCHHHHHHHHHH
T ss_pred HHHHCCCCHHHHHHHHHCCCCCCCCCHHHHH-HHHHHHHHHHHCCCCHHHHHHHHHHHHHCC-----CCHHHHHHHHHHH
T ss_conf 9850346156789998657742344308899-999999999980731399999999876438-----8309999999999
Q ss_pred HHHCCCHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHCCCHHHH
Q ss_conf 99639988999999982100870367589999999998499099999999987335989889899999999980189999
Q 003563 253 YLRLGNMEKAEILFADLQWKNAIDHADLITEVADTLMSLGHSNSALKYYHFLETNAGTDNGYLYLKLAECYLSLKERAHA 332 (810)
Q Consensus 253 ~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A 332 (810)
+...|++++|+..|++++...|. +...+..++.++...|++++|+..++++... .|.++..+..+|.++...|++++|
T Consensus 315 ~~~~g~~~~A~~~~~~~~~~~~~-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~-~~~~~~~~~~l~~~~~~~g~~~~A 392 (597)
T 2xpi_A 315 LFVRSRFIDVLAITTKILEIDPY-NLDVYPLHLASLHESGEKNKLYLISNDLVDR-HPEKAVTWLAVGIYYLCVNKISEA 392 (597)
T ss_dssp HHHTTCHHHHHHHHHHHHHHCTT-CCTTHHHHHHHHHHHTCHHHHHHHHHHHHHH-CTTSHHHHHHHHHHHHHTTCHHHH
T ss_pred HHHHCCHHHHHHHHHHHHHCCCC-CHHHHHHHHHHHHHHCCHHHHHHHHHHHHHH-CCCCHHHHHHHHHHHHHHCCHHHH
T ss_conf 99846899999999999972955-3799999999999827777999999999851-835479999999999983569999
Q ss_pred HHHHHHHHHHCCCCHHHHHHHHHHHHHCCCHHHHHHHCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHCCCCHHH
Q ss_conf 99999998624999999999999999809988898725999887853478888981456789999997999835996567
Q 003563 333 IMFFYKALDRFEDNIDARLTLASLLLEEAKEEEAITLLSPPKDLDSLDMNSDKSNPWWLNEKIIMKLCHIYRAKGMPEDF 412 (810)
Q Consensus 333 ~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A 412 (810)
+..|+++++..|.+..++..++.++...|++++|++.+++++...|.+. .++..++.+|...|++++|
T Consensus 393 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~------------~~~~~l~~~~~~~g~~~~A 460 (597)
T 2xpi_A 393 RRYFSKSSTMDPQFGPAWIGFAHSFAIEGEHDQAISAYTTAARLFQGTH------------LPYLFLGMQHMQLGNILLA 460 (597)
T ss_dssp HHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHTTTTCS------------HHHHHHHHHHHHHTCHHHH
T ss_pred HHHHHHHHHHCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCCCCH------------HHHHHHHHHHHHCCCHHHH
T ss_conf 9999999872977789999999999975777999999999998681343------------8999999999985799999
Q ss_pred HHHHHHHH
Q ss_conf 86556655
Q 003563 413 VDAIFPLV 420 (810)
Q Consensus 413 ~~~~~~~l 420 (810)
++.+.+++
T Consensus 461 ~~~~~~~~ 468 (597)
T 2xpi_A 461 NEYLQSSY 468 (597)
T ss_dssp HHHHHHHH
T ss_pred HHHHHHHH
T ss_conf 99999999
No 2
>1w3b_A UDP-N-acetylglucosamine--peptide N-acetylglucosaminyltransferase 110; OGT, glcnac, nucleoporin, O-linked glycosylation, TPR repeat, protein binding; 2.85A {Homo sapiens} SCOP: a.118.8.1
Probab=1.00 E-value=1 Score=312.05 Aligned_cols=368 Identities=18% Similarity=0.141 Sum_probs=352.5
Q ss_pred HHHHHHHHHCCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHCCC
Q ss_conf 99999999829989999999999983999948999999999985992899999999982099999999999999997499
Q 003563 37 LGEASLQYAYGNFEQAISLLKEVVRLSPNLPETYNTLGLAHSALGNHKSAFDFYVIAAHLSPKDSALWKQLLTFAVQKGD 116 (810)
Q Consensus 37 l~~a~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~p~~~~~~~~la~~~~~~g~ 116 (810)
+..|..++..|++++|+..+.++++.+|+++.++..+|.++...|++++|...+.+++..+|.++.+|..+|.++...|+
T Consensus 3 ~~~a~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~~~~~~a~~~~~~a~~~~p~~~~~~~~lg~~~~~~g~ 82 (388)
T 1w3b_A 3 MELAHREYQAGDFEAAERHCMQLWRQEPDNTGVLLLLSSIHFQCRRLDRSAHFSTLAIKQNPLLAEAYSNLGNVYKERGQ 82 (388)
T ss_dssp CTHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTC
T ss_pred HHHHHHHHHCCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHCCC
T ss_conf 55799998779999999999999984978899999999999986899999999999976197866999999999987799
Q ss_pred HHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHH
Q ss_conf 89999999999980999977899999999980999899999999998699998999999999998399479999999988
Q 003563 117 TAQAMYYIRQAIRAEPKDISLRIHLASFYVEIGDYEKAAESYEQIQKLFPDNVDATKTGAQLFLKCGQTARSIGILEEYL 196 (810)
Q Consensus 117 ~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~l 196 (810)
+++|+..|++++..+|++..++..+|.++...|++++|+..+++++...|++..++..+|.++...|++++|+..+++++
T Consensus 83 ~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al 162 (388)
T 1w3b_A 83 LQEAIEHYRHALRLKPDFIDGYINLAAALVAAGDMEGAVQAYVSALQYNPDLYCVRSDLGNLLKALGRLEEAKACYLKAI 162 (388)
T ss_dssp HHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHSCSSHHHHHHHHHHHHCTTCTHHHHHHHHHHHTTSCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHH
T ss_conf 99999999999874965399999999999985899999999999997598968999999999998468999999999998
Q ss_pred HHCCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHCCCCCH
Q ss_conf 51999999589999999999727999999999999998307998828889999999996399889999999821008703
Q 003563 197 KVHPSDADLSVIDLLVAILMENNAYEKTLQHIEHAQIVRFSGKELPLKLKVKAGICYLRLGNMEKAEILFADLQWKNAID 276 (810)
Q Consensus 197 ~~~p~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~ 276 (810)
...|.+.. ++..+|.++...|++++|+..+++++.. .|....++..+|.++...|++++|+..+++++...|.
T Consensus 163 ~~~p~~~~--~~~~l~~~~~~~g~~~~A~~~~~~al~~----~p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~- 235 (388)
T 1w3b_A 163 ETQPNFAV--AWSNLGCVFNAQGEIWLAIHHFEKAVTL----DPNFLDAYINLGNVLKEARIFDRAVAAYLRALSLSPN- 235 (388)
T ss_dssp HHCTTCHH--HHHHHHHHHHTTTCHHHHHHHHHHHHHH----CTTCHHHHHHHHHHHHTTTCTTHHHHHHHHHHHHCTT-
T ss_pred HHCCCCHH--HHHHHHHHHHHCCCHHHHHHHHHHHHHC----CCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCCC-
T ss_conf 72989789--9999999999859999999999999855----9886799999999999857899999999999852968-
Q ss_pred HHHHHHHHHHHHHHCCCCHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCCCCHHHHHHHHHH
Q ss_conf 67589999999998499099999999987335989889899999999980189999999999986249999999999999
Q 003563 277 HADLITEVADTLMSLGHSNSALKYYHFLETNAGTDNGYLYLKLAECYLSLKERAHAIMFFYKALDRFEDNIDARLTLASL 356 (810)
Q Consensus 277 ~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~ 356 (810)
++.++..+|.++...|++++|+..+++++.. .|..+.++..+|.++...|++++|+..++++++..|++..++..++.+
T Consensus 236 ~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~-~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~ 314 (388)
T 1w3b_A 236 HAVVHGNLACVYYEQGLIDLAIDTYRRAIEL-QPHFPDAYCNLANALKEKGSVAEAEDCYNTALRLCPTHADSLNNLANI 314 (388)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHT-CSSCHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHCTTCHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHCCCHHHHHHHHHHHHHH-CCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCCCCHHHHHHHHHH
T ss_conf 7899999999999868899999999999864-999889999999999986997999999999986494449999999999
Q ss_pred HHHCCCHHHHHHHCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHH
Q ss_conf 99809988898725999887853478888981456789999997999835996567865566556567
Q 003563 357 LLEEAKEEEAITLLSPPKDLDSLDMNSDKSNPWWLNEKIIMKLCHIYRAKGMPEDFVDAIFPLVCESL 424 (810)
Q Consensus 357 ~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~~ 424 (810)
+...|++++|+..++++++..|.+. .++..+|.+|...|++++|+..++++++..+
T Consensus 315 ~~~~g~~~~A~~~~~~al~~~p~~~------------~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~p 370 (388)
T 1w3b_A 315 KREQGNIEEAVRLYRKALEVFPEFA------------AAHSNLASVLQQQGKLQEALMHYKEAIRISP 370 (388)
T ss_dssp HHTTTCHHHHHHHHHHHTTSCTTCH------------HHHHHHHHHHHTTTCCHHHHHHHHHHHTTCT
T ss_pred HHHCCCHHHHHHHHHHHHHCCCCCH------------HHHHHHHHHHHHCCCHHHHHHHHHHHHHHCC
T ss_conf 9984899999999999986098739------------9997799999986888999999999986199
No 3
>2xpi_A Anaphase-promoting complex subunit CUT9; cell cycle, TPR, ubiquitin ligase; 2.60A {Schizosaccharomyces pombe}
Probab=1.00 E-value=1 Score=302.13 Aligned_cols=488 Identities=16% Similarity=0.045 Sum_probs=298.5
Q ss_pred CHHHHHHHHHHHHHCCCHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHCCCCCHHHHHHHHHHH
Q ss_conf 94899999999998599289999999998209999999999999999749989999999999980999977899999999
Q 003563 66 LPETYNTLGLAHSALGNHKSAFDFYVIAAHLSPKDSALWKQLLTFAVQKGDTAQAMYYIRQAIRAEPKDISLRIHLASFY 145 (810)
Q Consensus 66 ~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~ 145 (810)
+...+..++..+...|++++|+..+.+++...|+ ...+..++.++...|++++|+..+++++.. |.++.++..++.+|
T Consensus 83 ~~~~~~~~~~~~~~~g~~~~A~~~~~~~~~~~p~-~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~-~~~~~~~~~l~~~~ 160 (597)
T 2xpi_A 83 REDYLRLWRHDALMQQQYKCAAFVGEKVLDITGN-PNDAFWLAQVYCCTGDYARAKCLLTKEDLY-NRSSACRYLAAFCL 160 (597)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHCC-HHHHHHHHHHHHHTTCHHHHHHHHHHTCGG-GTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHCCC-CHHHHHHHHHHHHCCCHHHHHHHHHHHHCC-CCCHHHHHHHHHHH
T ss_conf 9999999999998745834799999999960899-357999999999747699999999987335-45650899999999
Q ss_pred HHCCCHHHHHHHHHHHHHHC----------------CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCCCCCCHHHHH
Q ss_conf 98099989999999999869----------------99989999999999983994799999999885199999958999
Q 003563 146 VEIGDYEKAAESYEQIQKLF----------------PDNVDATKTGAQLFLKCGQTARSIGILEEYLKVHPSDADLSVID 209 (810)
Q Consensus 146 ~~~g~~~~A~~~~~~~l~~~----------------p~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~~ 209 (810)
...|++++|+..|++..... +.+..++..++.+|...|++++|+..|+++++.+|.+.. ++.
T Consensus 161 ~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~--~~~ 238 (597)
T 2xpi_A 161 VKLYDWQGALNLLGETNPFRKDEKNANKLLMQDGGIKLEASMCYLRGQVYTNLSNFDRAKECYKEALMVDAKCYE--AFD 238 (597)
T ss_dssp HHTTCHHHHHHHHCSSCTTC----------CCCSSCCHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHH--HHH
T ss_pred HHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCCHHHH--HHH
T ss_conf 988669999999842488632232343343211235125899999889999839989999999999972932569--999
Q ss_pred HHHHHHHHCCCHHHHHHH---HHHHHHHHCCCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHCCCCCHHHHHHHHHHH
Q ss_conf 999999972799999999---99999983079988288899999999963998899999998210087036758999999
Q 003563 210 LLVAILMENNAYEKTLQH---IEHAQIVRFSGKELPLKLKVKAGICYLRLGNMEKAEILFADLQWKNAIDHADLITEVAD 286 (810)
Q Consensus 210 ~la~~~~~~g~~~~A~~~---~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~la~ 286 (810)
.++.++...+....+... +.+.... +......++..++..+...|++++|...+++++.. + .+...+..++.
T Consensus 239 ~l~~~~~~~~~~~~~~~~~l~~~~~~~~---~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~~~~~-~-~~~~~~~~l~~ 313 (597)
T 2xpi_A 239 QLVSNHLLTADEEWDLVLKLNYSTYSKE---DAAFLRSLYMLKLNKTSHEDELRRAEDYLSSINGL-E-KSSDLLLCKAD 313 (597)
T ss_dssp HHHHTTCSCHHHHHHHHHHSCTHHHHGG---GHHHHHHHHHTTSCTTTTHHHHHHHHHHHHTSTTG-G-GCHHHHHHHHH
T ss_pred HHHHHHCCCCHHHHHHHHHCCCCCCCCC---HHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHCC-C-CHHHHHHHHHH
T ss_conf 9998503461567899986577423443---08899999999999980731399999999876438-8-30999999999
Q ss_pred HHHHCCCCHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHCCCHHHH
Q ss_conf 99984990999999999873359898898999999999801899999999999862499999999999999980998889
Q 003563 287 TLMSLGHSNSALKYYHFLETNAGTDNGYLYLKLAECYLSLKERAHAIMFFYKALDRFEDNIDARLTLASLLLEEAKEEEA 366 (810)
Q Consensus 287 ~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A 366 (810)
.+...|++++|+..|++++.. .|.+..++..++.++...|++++|...+++++...|++..++..++.+|...|++++|
T Consensus 314 ~~~~~g~~~~A~~~~~~~~~~-~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A 392 (597)
T 2xpi_A 314 TLFVRSRFIDVLAITTKILEI-DPYNLDVYPLHLASLHESGEKNKLYLISNDLVDRHPEKAVTWLAVGIYYLCVNKISEA 392 (597)
T ss_dssp HHHHTTCHHHHHHHHHHHHHH-CTTCCTTHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTSHHHHHHHHHHHHHTTCHHHH
T ss_pred HHHHHCCHHHHHHHHHHHHHC-CCCCHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHCCHHHH
T ss_conf 999846899999999999972-9553799999999999827777999999999851835479999999999983569999
Q ss_pred HHHCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHH
Q ss_conf 87259998878534788889814567899999979998359965678655665565677999987766421121346888
Q 003563 367 ITLLSPPKDLDSLDMNSDKSNPWWLNEKIIMKLCHIYRAKGMPEDFVDAIFPLVCESLCVEALRQKVKVKRRLTKGILQQ 446 (810)
Q Consensus 367 ~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~ 446 (810)
++.++++++..|.+. .++..++.+|...|++++|++.+.++++..
T Consensus 393 ~~~~~~~~~~~~~~~------------~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~----------------------- 437 (597)
T 2xpi_A 393 RRYFSKSSTMDPQFG------------PAWIGFAHSFAIEGEHDQAISAYTTAARLF----------------------- 437 (597)
T ss_dssp HHHHHHHHHHCTTCH------------HHHHHHHHHHHHHTCHHHHHHHHHHHHHTT-----------------------
T ss_pred HHHHHHHHHHCCCCH------------HHHHHHHHHHHHCCCHHHHHHHHHHHHHHC-----------------------
T ss_conf 999999987297778------------999999999997577799999999999868-----------------------
Q ss_pred HHHHHCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCHHHHHCCCCCCCCCCC
Q ss_conf 87572179987422477788870488999999899998888799999998740655689999704532003899888777
Q 003563 447 RTKIYNNLPTDSILCGIRPAAPKSELLVAARARKKIQKKEALKEEKKALAKAAGVEWHSDDTDDESQQEAFREPPLPNLL 526 (810)
Q Consensus 447 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 526 (810)
T Consensus 438 -------------------------------------------------------------------------------- 437 (597)
T 2xpi_A 438 -------------------------------------------------------------------------------- 437 (597)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred --------------------------------------------------------------------------------
T ss_conf --------------------------------------------------------------------------------
Q ss_pred CCHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHCCCCH
Q ss_conf 84045899999999998521199999999999963212688568999998543430025677315789999998578975
Q 003563 527 KNEENQCLIIDLCKALASLQRYEEASEIINLSMRLAYNILPLEKKEELRSLGAKMAYDSTDPNHGFDCAKYILQLHPYSL 606 (810)
Q Consensus 527 ~~~~~~~~~~~~~~~~~~~~~~~eA~~~~~~al~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~a~~~~r~~~~~~p~~~ 606 (810)
|+...++..++.++...|++++|.++++.++. ..|.+.
T Consensus 438 --~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~----------------------------------------~~~~~~ 475 (597)
T 2xpi_A 438 --QGTHLPYLFLGMQHMQLGNILLANEYLQSSYA----------------------------------------LFQYDP 475 (597)
T ss_dssp --TTCSHHHHHHHHHHHHHTCHHHHHHHHHHHHH----------------------------------------HCCCCH
T ss_pred --CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHH----------------------------------------HCCCCH
T ss_conf --13438999999999985799999999999998----------------------------------------488876
Q ss_pred HHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHCCCCCCCHHHHCCHHHHCCCHHHHHHHHHHHHHH------CCCC-HH
Q ss_conf 6769999999830354556611269999999853999985131020121004569999999999952------9988-58
Q 003563 607 SAWNCYYKVLSRMGKINSKHSKHSKFIRYLRAKYKDCVPPIIISGHQFTMASHHQDAARCYLEAYKL------LPEN-PL 679 (810)
Q Consensus 607 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~g~~~~~~~~~~~A~~~y~~a~~~------~p~~-p~ 679 (810)
..|+.+ |.++...|+++.|+..|.+++.. +|++ +.
T Consensus 476 ~~~~~l--------------------------------------~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~p~~~~~ 517 (597)
T 2xpi_A 476 LLLNEL--------------------------------------GVVAFNKSDMQTAINHFQNALLLVKKTQSNEKPWAA 517 (597)
T ss_dssp HHHHHH--------------------------------------HHHHHHTTCHHHHHHHHHHHHHHHHHSCCCSGGGHH
T ss_pred HHHHHH--------------------------------------HHHHHHHCCHHHHHHHHHHHHHHHHCCCCCHHHHHH
T ss_conf 799999--------------------------------------999998189999999999999853234545354999
Q ss_pred HHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHCHHHHHHHHHHHHHCCCCCCCCCC
Q ss_conf 89999999999980855562468999999999985821289832556599898972736679999999863501368899
Q 003563 680 INLCVGSALINLALGFRLQNKHQCLAQGFAFLYNNLRLCEHSQEALYNIARACHHVGLVSLAASYYEKVLAIKEKDYPIP 759 (810)
Q Consensus 680 ~~l~l~~~~~~~~~~r~~~~r~~~~~qa~~~l~~y~~~~~~~~e~~ynlgr~~~~lg~~~~Ai~~YekvL~~~~~~~~~~ 759 (810)
+...+|.++...+ ...+|+..+.+..+..|.+.++++++|.+|...|.+..|+.+|++++++.|++
T Consensus 518 ~~~~l~~~~~~~g----------~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~l~~~p~~---- 583 (597)
T 2xpi_A 518 TWANLGHAYRKLK----------MYDAAIDALNQGLLLSTNDANVHTAIALVYLHKKIPGLAITHLHESLAISPNE---- 583 (597)
T ss_dssp HHHHHHHHHHHTT----------CHHHHHHHHHHHHHHSSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTC----
T ss_pred HHHHHHHHHHHHC----------CHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHCCHHHHHHHHHHHHHCCCCC----
T ss_conf 9999999999804----------79999999999997389973899999999998178999999999997208887----
Q ss_pred CCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHH
Q ss_conf 8999998631368988555318899999999983
Q 003563 760 KHNDKRPDLMESGESGYCDLQREAAYNLHLIYKN 793 (810)
Q Consensus 760 ~~~~~~~~~~~~~~~~~~~l~~eaa~nl~~iy~~ 793 (810)
.++..+|+.+|..
T Consensus 584 ---------------------~~~~~~l~~~~~~ 596 (597)
T 2xpi_A 584 ---------------------IMASDLLKRALEE 596 (597)
T ss_dssp ---------------------HHHHHHHHHTTC-
T ss_pred ---------------------HHHHHHHHHHHHC
T ss_conf ---------------------4899999998743
No 4
>1w3b_A UDP-N-acetylglucosamine--peptide N-acetylglucosaminyltransferase 110; OGT, glcnac, nucleoporin, O-linked glycosylation, TPR repeat, protein binding; 2.85A {Homo sapiens} SCOP: a.118.8.1
Probab=1.00 E-value=1 Score=300.03 Aligned_cols=328 Identities=18% Similarity=0.113 Sum_probs=168.8
Q ss_pred HHHHHHHCCCHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHCCCHH
Q ss_conf 99999985992899999999982099999999999999997499899999999999809999778999999999809998
Q 003563 73 LGLAHSALGNHKSAFDFYVIAAHLSPKDSALWKQLLTFAVQKGDTAQAMYYIRQAIRAEPKDISLRIHLASFYVEIGDYE 152 (810)
Q Consensus 73 la~~~~~~g~~~~A~~~~~~a~~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~ 152 (810)
+|..++..|++++|+..+.+++..+|++..++..++.++...|++++|...++++++.+|.++.++..+|.++...|+++
T Consensus 5 ~a~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~~~~~~a~~~~~~a~~~~p~~~~~~~~lg~~~~~~g~~~ 84 (388)
T 1w3b_A 5 LAHREYQAGDFEAAERHCMQLWRQEPDNTGVLLLLSSIHFQCRRLDRSAHFSTLAIKQNPLLAEAYSNLGNVYKERGQLQ 84 (388)
T ss_dssp HHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHH
T ss_pred HHHHHHHCCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHCCCHH
T ss_conf 79999877999999999999998497889999999999998689999999999997619786699999999998779999
Q ss_pred HHHHHHHHHHHHCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHH
Q ss_conf 99999999998699998999999999998399479999999988519999995899999999997279999999999999
Q 003563 153 KAAESYEQIQKLFPDNVDATKTGAQLFLKCGQTARSIGILEEYLKVHPSDADLSVIDLLVAILMENNAYEKTLQHIEHAQ 232 (810)
Q Consensus 153 ~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~ 232 (810)
+|+..|++++...|++..++..+|.++...|++++|+..++++++..|+... .+..+|.++...|++++|+..+++++
T Consensus 85 ~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~--~~~~l~~~~~~~g~~~~A~~~~~~al 162 (388)
T 1w3b_A 85 EAIEHYRHALRLKPDFIDGYINLAAALVAAGDMEGAVQAYVSALQYNPDLYC--VRSDLGNLLKALGRLEEAKACYLKAI 162 (388)
T ss_dssp HHHHHHHHHHHHCTTCHHHHHHHHHHHHHHSCSSHHHHHHHHHHHHCTTCTH--HHHHHHHHHHTTSCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHCCCCHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCCCCHH--HHHHHHHHHHHCCCHHHHHHHHHHHH
T ss_conf 9999999998749653999999999999858999999999999975989689--99999999998468999999999998
Q ss_pred HHHCCCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHCCCCCC
Q ss_conf 98307998828889999999996399889999999821008703675899999999984990999999999873359898
Q 003563 233 IVRFSGKELPLKLKVKAGICYLRLGNMEKAEILFADLQWKNAIDHADLITEVADTLMSLGHSNSALKYYHFLETNAGTDN 312 (810)
Q Consensus 233 ~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~ 312 (810)
.. .|....++..+|.++...|++++|+..+++++..+|. ....+..+|.++...|++++|+..+++++.. .|.+
T Consensus 163 ~~----~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~-~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~-~p~~ 236 (388)
T 1w3b_A 163 ET----QPNFAVAWSNLGCVFNAQGEIWLAIHHFEKAVTLDPN-FLDAYINLGNVLKEARIFDRAVAAYLRALSL-SPNH 236 (388)
T ss_dssp HH----CTTCHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHTTTCTTHHHHHHHHHHHH-CTTC
T ss_pred HH----CCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHCCCC-CHHHHHHHHHHHHHCCCHHHHHHHHHHHHHH-CCCC
T ss_conf 72----9897899999999999859999999999999855988-6799999999999857899999999999852-9687
Q ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHCCCHHHHHHHCCCCCCCCCCCCCCCCCCHHHHH
Q ss_conf 89899999999980189999999999986249999999999999998099888987259998878534788889814567
Q 003563 313 GYLYLKLAECYLSLKERAHAIMFFYKALDRFEDNIDARLTLASLLLEEAKEEEAITLLSPPKDLDSLDMNSDKSNPWWLN 392 (810)
Q Consensus 313 ~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~ 392 (810)
+.++..+|.++...|++++|+..++++++..|+++.++..++.++...|++++|+..+++++...|.+.
T Consensus 237 ~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~----------- 305 (388)
T 1w3b_A 237 AVVHGNLACVYYEQGLIDLAIDTYRRAIELQPHFPDAYCNLANALKEKGSVAEAEDCYNTALRLCPTHA----------- 305 (388)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHTCSSCHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHCTTCH-----------
T ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCCCCH-----------
T ss_conf 899999999999868899999999999864999889999999999986997999999999986494449-----------
Q ss_pred HHHHHHHHHHHHHCCCCHHHHHHHHHHH
Q ss_conf 8999999799983599656786556655
Q 003563 393 EKIIMKLCHIYRAKGMPEDFVDAIFPLV 420 (810)
Q Consensus 393 ~~~~~~la~~~~~~g~~~~A~~~~~~~l 420 (810)
.++..++.++...|++++|+..+.+++
T Consensus 306 -~~~~~l~~~~~~~g~~~~A~~~~~~al 332 (388)
T 1w3b_A 306 -DSLNNLANIKREQGNIEEAVRLYRKAL 332 (388)
T ss_dssp -HHHHHHHHHHHTTTCHHHHHHHHHHHT
T ss_pred -HHHHHHHHHHHHCCCHHHHHHHHHHHH
T ss_conf -999999999998489999999999998
No 5
>2gw1_A Mitochondrial precursor proteins import receptor; TPR, protein transport; 3.00A {Saccharomyces cerevisiae}
Probab=1.00 E-value=1 Score=284.60 Aligned_cols=374 Identities=14% Similarity=0.042 Sum_probs=230.8
Q ss_pred HHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHCCCCCHHHHHHHHHH
Q ss_conf 88999999999999829989999999999983999948999999999985992899999999982099999999999999
Q 003563 31 PGVTKMLGEASLQYAYGNFEQAISLLKEVVRLSPNLPETYNTLGLAHSALGNHKSAFDFYVIAAHLSPKDSALWKQLLTF 110 (810)
Q Consensus 31 ~~~~~~l~~a~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~p~~~~~~~~la~~ 110 (810)
..+..++..|..++..|++++|+..|++++..+| ++.++..+|.++...|++++|+..+.+++..+|.+..++..+|.+
T Consensus 4 ~~a~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p-~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~ 82 (514)
T 2gw1_A 4 KYALALKDKGNQFFRNKKYDDAIKYYNWALELKE-DPVFYSNLSACYVSVGDLKKVVEMSTKALELKPDYSKVLLRRASA 82 (514)
T ss_dssp HHHHHHHHHHHHHHHTSCHHHHHHHHHHHHHHCC-CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCSCCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHCCC-CHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHH
T ss_conf 4579999987899986027899999999985592-278998688999988549999999987760693789999988899
Q ss_pred HHHCCCHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHCCCHHHHHHH---HHHHHHHCCCCHHHHHHHHHHHHHCCCHHH
Q ss_conf 99749989999999999980999977899999999980999899999---999998699998999999999998399479
Q 003563 111 AVQKGDTAQAMYYIRQAIRAEPKDISLRIHLASFYVEIGDYEKAAES---YEQIQKLFPDNVDATKTGAQLFLKCGQTAR 187 (810)
Q Consensus 111 ~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~---~~~~l~~~p~~~~~~~~la~~~~~~g~~~~ 187 (810)
+...|++++|+..|++++...|.+...................+.+. ++.+... |.........+.... ......
T Consensus 83 ~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~-~~~~~~~~~~~~~~~-~~~~~~ 160 (514)
T 2gw1_A 83 NEGLGKFADAMFDLSVLSLNGDFNDASIEPMLERNLNKQAMSKLKEKFGDIDTATAT-PTELSTQPAKERKDK-QENLPS 160 (514)
T ss_dssp HHHTTCHHHHHHHHHHHHHSSSCCGGGTHHHHHHHHHHHHHHHHTTC-----------------------------CCCC
T ss_pred HHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHCCCCHHHHHHHH-CCCCCH
T ss_conf 998766888999999999559875113789999999999999999999989999876-651267724678863-447861
Q ss_pred H--HHHHHHHHHHCCC------CCCHHHHHHHHHHHHH---CCCHHHHHHHHHHHHHHH-------CCC---CCCCHHHH
Q ss_conf 9--9999998851999------9995899999999997---279999999999999983-------079---98828889
Q 003563 188 S--IGILEEYLKVHPS------DADLSVIDLLVAILME---NNAYEKTLQHIEHAQIVR-------FSG---KELPLKLK 246 (810)
Q Consensus 188 A--~~~~~~~l~~~p~------~~~~~~~~~la~~~~~---~g~~~~A~~~~~~~~~~~-------~~~---~~~~~~~~ 246 (810)
. ...+.......+. ......+...+..+.. .|++++|+..+++++..+ +.+ .+....++
T Consensus 161 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 240 (514)
T 2gw1_A 161 VTSMASFFGIFKPELTFANYDESNEADKELMNGLSNLYKRSPESYDKADESFTKAARLFEEQLDKNNEDEKLKEKLAISL 240 (514)
T ss_dssp HHHHHHHHTTSCCCCCCSSCCSSCHHHHHHHHHHHHHSSCCTTHHHHHHHHHHHHHHHHHHHTTTSTTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHCCHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHCCCCCCCCCCHHHHHHH
T ss_conf 58999998625878888872599588899998999987623322999999999999886654223810011482789999
Q ss_pred HHHHHHHHHCCCHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHC
Q ss_conf 99999999639988999999982100870367589999999998499099999999987335989889899999999980
Q 003563 247 VKAGICYLRLGNMEKAEILFADLQWKNAIDHADLITEVADTLMSLGHSNSALKYYHFLETNAGTDNGYLYLKLAECYLSL 326 (810)
Q Consensus 247 ~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~la~~~~~~ 326 (810)
..+|.++...|++++|+..+++++...|. ...+..+|.++...|++++|+..+++++.. .|.++.++..+|.++...
T Consensus 241 ~~~~~~~~~~~~~~~A~~~~~~~l~~~~~--~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~-~~~~~~~~~~l~~~~~~~ 317 (514)
T 2gw1_A 241 EHTGIFKFLKNDPLGAHEDIKKAIELFPR--VNSYIYMALIMADRNDSTEYYNYFDKALKL-DSNNSSVYYHRGQMNFIL 317 (514)
T ss_dssp HHHHHHHHHSSCHHHHHHHHHHHHHHCCC--HHHHHHHHHHHHTSSCCTTGGGHHHHHHTT-CTTCTHHHHHHHHHHHHT
T ss_pred HHHHHHHHHCCCHHHHHHHHHHHHHHCCC--HHHHHHHHHHHHHCCCHHHHHHHHHHHHHC-CCCCHHHHHHHHHHHHHH
T ss_conf 99999999878999999999999863864--899999999999888899999999998613-867789999999999980
Q ss_pred CCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHCCCHHHHHHHCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHC
Q ss_conf 18999999999998624999999999999999809988898725999887853478888981456789999997999835
Q 003563 327 KERAHAIMFFYKALDRFEDNIDARLTLASLLLEEAKEEEAITLLSPPKDLDSLDMNSDKSNPWWLNEKIIMKLCHIYRAK 406 (810)
Q Consensus 327 g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~ 406 (810)
|++++|+..+++++...|.+..++..++.++...|++++|+..+++++...|.+. .++..+|.++...
T Consensus 318 ~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~------------~~~~~la~~~~~~ 385 (514)
T 2gw1_A 318 QNYDQAGKDFDKAKELDPENIFPYIQLACLAYRENKFDDCETLFSEAKRKFPEAP------------EVPNFFAEILTDK 385 (514)
T ss_dssp TCTTHHHHHHHHHHHTCSSCSHHHHHHHHHTTTTTCHHHHHHHHHHHHHHSTTCS------------HHHHHHHHHHHHT
T ss_pred CCHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCCCCH------------HHHHHHHHHHHHC
T ss_conf 7799999999999873850289999999999986899999999999998754677------------8999999999878
Q ss_pred CCCHHHHHHHHHHHHH
Q ss_conf 9965678655665565
Q 003563 407 GMPEDFVDAIFPLVCE 422 (810)
Q Consensus 407 g~~~~A~~~~~~~l~~ 422 (810)
|++++|+..+..+++.
T Consensus 386 ~~~~~A~~~~~~a~~~ 401 (514)
T 2gw1_A 386 NDFDKALKQYDLAIEL 401 (514)
T ss_dssp TCHHHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHH
T ss_conf 8999999999999976
No 6
>3fp2_A TPR repeat-containing protein YHR117W; TOM71, mitochondria translocation, allosteric REG phosphoprotein, TPR repeat, ATP-binding; 1.98A {Saccharomyces cerevisiae} PDB: 3fp3_A 3fp4_A 3lca_A
Probab=1.00 E-value=1 Score=277.85 Aligned_cols=367 Identities=15% Similarity=0.123 Sum_probs=286.1
Q ss_pred HHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHCCCCCHHHHHHHHHHH
Q ss_conf 89999999999998299899999999999839999489999999999859928999999999820999999999999999
Q 003563 32 GVTKMLGEASLQYAYGNFEQAISLLKEVVRLSPNLPETYNTLGLAHSALGNHKSAFDFYVIAAHLSPKDSALWKQLLTFA 111 (810)
Q Consensus 32 ~~~~~l~~a~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~p~~~~~~~~la~~~ 111 (810)
.+..++..|..++..|++++|+..|++++..+|+++.++..+|.++...|++++|+..+++++..+|++..++..+|.++
T Consensus 24 ~a~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~ 103 (537)
T 3fp2_A 24 YAVQLKNRGNHFFTAKNFNEAIKYYQYAIELDPNEPVFYSNISACYISTGDLEKVIEFTTKALEIKPDHSKALLRRASAN 103 (537)
T ss_dssp HHHHHHHHHHHHHHTTCCC-CHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHCCCHHHHHHHHHHHHHCCCCHHHHHHHHHHHH
T ss_conf 89999999999998642999999999998638998489999999999868999999999999860986289999999999
Q ss_pred HHCCCHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCCCCHHH---HHHHHHHHHHCCCHHHH
Q ss_conf 974998999999999998099997789999999998099989999999999869999899---99999999983994799
Q 003563 112 VQKGDTAQAMYYIRQAIRAEPKDISLRIHLASFYVEIGDYEKAAESYEQIQKLFPDNVDA---TKTGAQLFLKCGQTARS 188 (810)
Q Consensus 112 ~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~---~~~la~~~~~~g~~~~A 188 (810)
...|++++|+..++ ++...|+....+. ..+...+...+|+..+++++...|..... .......+....+...+
T Consensus 104 ~~~g~~~~A~~~~~-~~~~~~~~~~~~~---~~~~~~~~~~~a~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 179 (537)
T 3fp2_A 104 ESLGNFTDAMFDLS-VLSLNGDFDGASI---EPMLERNLNKQAMKVLNENLSKDEGRGSQVLPSNTSLASFFGIFDSHLE 179 (537)
T ss_dssp HHHTCHHHHHHHHH-HHC--------------CHHHHHHHHHHHHHHHHHCC-------CCCCCHHHHHHHHHTSCHHHH
T ss_pred HHCCCHHHHHHHHH-HHHCCCCCCHHHH---HHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCHHHHHHHHHHHCCHHHH
T ss_conf 98389999999999-9864878785889---9999877898899999999974745454345067579999974474999
Q ss_pred HHHHHHHHHHCCCCCCHHHHHHHHHH--------HHHCCCHHHHHHHHHHHHHHHCCCCCCC-------HHHHHHHHHHH
Q ss_conf 99999988519999995899999999--------9972799999999999999830799882-------88899999999
Q 003563 189 IGILEEYLKVHPSDADLSVIDLLVAI--------LMENNAYEKTLQHIEHAQIVRFSGKELP-------LKLKVKAGICY 253 (810)
Q Consensus 189 ~~~~~~~l~~~p~~~~~~~~~~la~~--------~~~~g~~~~A~~~~~~~~~~~~~~~~~~-------~~~~~~la~~~ 253 (810)
...+.+.....+... .....++.+ ....+++++|+..+++++.. .|.. ..++..+|.++
T Consensus 180 ~~~~~~~~~~~~~~~--~~~~~l~~~~~~~~~~~~~a~~~~~~A~~~~~~~l~~----~p~~~~~~~~~~~~~~~~g~~~ 253 (537)
T 3fp2_A 180 VSSVNTSSNYDTAYA--LLSDALQRLYSATDEGYLVANDLLTKSTDMYHSLLSA----NTVDDPLRENAALALCYTGIFH 253 (537)
T ss_dssp HHTSCCCCSSCSSHH--HHHHHHHHHHTCSHHHHHHHHHHHHHHHHHHHHHHC------CCCHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHCCCCCCHHH--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----CCCCCHHHHHHHHHHHHHHHHH
T ss_conf 998763256461789--9999998788764020688887999999999999987----8774044599999999999998
Q ss_pred HHCCCHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHCCCHHHHH
Q ss_conf 96399889999999821008703675899999999984990999999999873359898898999999999801899999
Q 003563 254 LRLGNMEKAEILFADLQWKNAIDHADLITEVADTLMSLGHSNSALKYYHFLETNAGTDNGYLYLKLAECYLSLKERAHAI 333 (810)
Q Consensus 254 ~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~ 333 (810)
...|++++|+..+++++...|. ...+..+|.++...|++++|+..+++++.. .|..+.++..+|.++...|++++|+
T Consensus 254 ~~~~~~~~A~~~~~~~~~~~~~--~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~-~~~~~~~~~~l~~~~~~~~~~~~A~ 330 (537)
T 3fp2_A 254 FLKNNLLDAQVLLQESINLHPT--PNSYIFLALTLADKENSQEFFKFFQKAVDL-NPEYPPTYYHRGQMYFILQDYKNAK 330 (537)
T ss_dssp HHTTCHHHHHHHHHHHHHHCCC--HHHHHHHHHHTCCSSCCHHHHHHHHHHHHH-CTTCHHHHHHHHHHHHHTTCHHHHH
T ss_pred HHCCCHHHHHHHHHHHHHCCCC--CHHHHHHHHHHHHHCCHHHHHHHHHHHHCC-CCCCHHHHHHHHHHHHHCCCHHHHH
T ss_conf 7545578999999999866987--469999999999803799999999997545-9998799999999998668999999
Q ss_pred HHHHHHHHHCCCCHHHHHHHHHHHHHCCCHHHHHHHCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHCCCCHHHH
Q ss_conf 99999986249999999999999998099888987259998878534788889814567899999979998359965678
Q 003563 334 MFFYKALDRFEDNIDARLTLASLLLEEAKEEEAITLLSPPKDLDSLDMNSDKSNPWWLNEKIIMKLCHIYRAKGMPEDFV 413 (810)
Q Consensus 334 ~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~ 413 (810)
..+++++...|++..++..+|.++...|++++|+..+++++...|.+. .++..+|.++...|++++|+
T Consensus 331 ~~~~~a~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~------------~~~~~l~~~~~~~g~~~~A~ 398 (537)
T 3fp2_A 331 EDFQKAQSLNPENVYPYIQLACLLYKQGKFTESEAFFNETKLKFPTLP------------EVPTFFAEILTDRGDFDTAI 398 (537)
T ss_dssp HHHHHHHHHCTTCSHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCT------------HHHHHHHHHHHHTTCHHHHH
T ss_pred HHHHHHHHHCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCCCCH------------HHHHHHHHHHHHHCCHHHHH
T ss_conf 999999985999779999999999984779999999999987399985------------99999999998837889999
Q ss_pred HHHHHHHHHH
Q ss_conf 6556655656
Q 003563 414 DAIFPLVCES 423 (810)
Q Consensus 414 ~~~~~~l~~~ 423 (810)
..+..+++..
T Consensus 399 ~~~~~a~~~~ 408 (537)
T 3fp2_A 399 KQYDIAKRLE 408 (537)
T ss_dssp HHHHHHHHHH
T ss_pred HHHHHHHHCC
T ss_conf 9999998709
No 7
>3fp2_A TPR repeat-containing protein YHR117W; TOM71, mitochondria translocation, allosteric REG phosphoprotein, TPR repeat, ATP-binding; 1.98A {Saccharomyces cerevisiae} PDB: 3fp3_A 3fp4_A 3lca_A
Probab=1.00 E-value=1 Score=271.69 Aligned_cols=372 Identities=12% Similarity=0.088 Sum_probs=299.7
Q ss_pred CHHHHHHHHHHHHHCCCHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHCCCCCHHHHHHHHHHH
Q ss_conf 94899999999998599289999999998209999999999999999749989999999999980999977899999999
Q 003563 66 LPETYNTLGLAHSALGNHKSAFDFYVIAAHLSPKDSALWKQLLTFAVQKGDTAQAMYYIRQAIRAEPKDISLRIHLASFY 145 (810)
Q Consensus 66 ~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~ 145 (810)
.+..+..+|..+...|++++|+..|++++..+|+++.++..+|.++...|++++|+..++++++.+|+++.++..+|.++
T Consensus 24 ~a~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~ 103 (537)
T 3fp2_A 24 YAVQLKNRGNHFFTAKNFNEAIKYYQYAIELDPNEPVFYSNISACYISTGDLEKVIEFTTKALEIKPDHSKALLRRASAN 103 (537)
T ss_dssp HHHHHHHHHHHHHHTTCCC-CHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHCCCHHHHHHHHHHHHHCCCCHHHHHHHHHHHH
T ss_conf 89999999999998642999999999998638998489999999999868999999999999860986289999999999
Q ss_pred HHCCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCCCCCCH-HHHHHHHHHHHHCCCHHHH
Q ss_conf 980999899999999998699998999999999998399479999999988519999995-8999999999972799999
Q 003563 146 VEIGDYEKAAESYEQIQKLFPDNVDATKTGAQLFLKCGQTARSIGILEEYLKVHPSDADL-SVIDLLVAILMENNAYEKT 224 (810)
Q Consensus 146 ~~~g~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~-~~~~~la~~~~~~g~~~~A 224 (810)
...|++++|+..|+ .+...|+....+ ...+...+...+|+..++.++...|..... .........+....+...+
T Consensus 104 ~~~g~~~~A~~~~~-~~~~~~~~~~~~---~~~~~~~~~~~~a~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 179 (537)
T 3fp2_A 104 ESLGNFTDAMFDLS-VLSLNGDFDGAS---IEPMLERNLNKQAMKVLNENLSKDEGRGSQVLPSNTSLASFFGIFDSHLE 179 (537)
T ss_dssp HHHTCHHHHHHHHH-HHC--------------CHHHHHHHHHHHHHHHHHCC-------CCCCCHHHHHHHHHTSCHHHH
T ss_pred HHCCCHHHHHHHHH-HHHCCCCCCHHH---HHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCHHHHHHHHHHHCCHHHH
T ss_conf 98389999999999-986487878588---99999877898899999999974745454345067579999974474999
Q ss_pred HHHHHHHHHHHCCCCCCCHHHHHHHHH--------HHHHCCCHHHHHHHHHHHHCCCCCHH------HHHHHHHHHHHHH
Q ss_conf 999999999830799882888999999--------99963998899999998210087036------7589999999998
Q 003563 225 LQHIEHAQIVRFSGKELPLKLKVKAGI--------CYLRLGNMEKAEILFADLQWKNAIDH------ADLITEVADTLMS 290 (810)
Q Consensus 225 ~~~~~~~~~~~~~~~~~~~~~~~~la~--------~~~~~g~~~~A~~~~~~~~~~~~~~~------~~~~~~la~~~~~ 290 (810)
...+.+.... .+........++. .....|++++|+..+++++...|... ..++..+|.++..
T Consensus 180 ~~~~~~~~~~----~~~~~~~~~~l~~~~~~~~~~~~~a~~~~~~A~~~~~~~l~~~p~~~~~~~~~~~~~~~~g~~~~~ 255 (537)
T 3fp2_A 180 VSSVNTSSNY----DTAYALLSDALQRLYSATDEGYLVANDLLTKSTDMYHSLLSANTVDDPLRENAALALCYTGIFHFL 255 (537)
T ss_dssp HHTSCCCCSS----CSSHHHHHHHHHHHHTCSHHHHHHHHHHHHHHHHHHHHHHC--CCCHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHCCCC----CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHH
T ss_conf 9987632564----617899999998788764020688887999999999999987877404459999999999999875
Q ss_pred CCCCHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHCCCHHHHHHHC
Q ss_conf 49909999999998733598988989999999998018999999999998624999999999999999809988898725
Q 003563 291 LGHSNSALKYYHFLETNAGTDNGYLYLKLAECYLSLKERAHAIMFFYKALDRFEDNIDARLTLASLLLEEAKEEEAITLL 370 (810)
Q Consensus 291 ~~~~~~A~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~ 370 (810)
.|++++|+..+++++.. .|. +..+..+|.++...|++++|+..+++++...|+++.++..+|.++...|++++|+..+
T Consensus 256 ~~~~~~A~~~~~~~~~~-~~~-~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~ 333 (537)
T 3fp2_A 256 KNNLLDAQVLLQESINL-HPT-PNSYIFLALTLADKENSQEFFKFFQKAVDLNPEYPPTYYHRGQMYFILQDYKNAKEDF 333 (537)
T ss_dssp TTCHHHHHHHHHHHHHH-CCC-HHHHHHHHHHTCCSSCCHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred CCCHHHHHHHHHHHHHC-CCC-CHHHHHHHHHHHHHCCHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHCCCHHHHHHHH
T ss_conf 45578999999999866-987-4699999999998037999999999975459998799999999998668999999999
Q ss_pred CCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHH
Q ss_conf 99988785347888898145678999999799983599656786556655656779999877664211213468888757
Q 003563 371 SPPKDLDSLDMNSDKSNPWWLNEKIIMKLCHIYRAKGMPEDFVDAIFPLVCESLCVEALRQKVKVKRRLTKGILQQRTKI 450 (810)
Q Consensus 371 ~~a~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 450 (810)
++++...|.+. .++..+|.++...|++++|+..+..+++..
T Consensus 334 ~~a~~~~~~~~------------~~~~~la~~~~~~g~~~~A~~~~~~~~~~~--------------------------- 374 (537)
T 3fp2_A 334 QKAQSLNPENV------------YPYIQLACLLYKQGKFTESEAFFNETKLKF--------------------------- 374 (537)
T ss_dssp HHHHHHCTTCS------------HHHHHHHHHHHHTTCHHHHHHHHHHHHHHC---------------------------
T ss_pred HHHHHHCCCCH------------HHHHHHHHHHHHCCCHHHHHHHHHHHHHHC---------------------------
T ss_conf 99998599977------------999999999998477999999999998739---------------------------
Q ss_pred HCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCHHHHHCCCCCCCCCCCCCHH
Q ss_conf 21799874224777888704889999998999988887999999987406556899997045320038998887778404
Q 003563 451 YNNLPTDSILCGIRPAAPKSELLVAARARKKIQKKEALKEEKKALAKAAGVEWHSDDTDDESQQEAFREPPLPNLLKNEE 530 (810)
Q Consensus 451 ~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 530 (810)
|+
T Consensus 375 ------------------------------------------------------------------------------~~ 376 (537)
T 3fp2_A 375 ------------------------------------------------------------------------------PT 376 (537)
T ss_dssp ------------------------------------------------------------------------------TT
T ss_pred ------------------------------------------------------------------------------CC
T ss_conf ------------------------------------------------------------------------------99
Q ss_pred HHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHC
Q ss_conf 5899999999998521199999999999963212
Q 003563 531 NQCLIIDLCKALASLQRYEEASEIINLSMRLAYN 564 (810)
Q Consensus 531 ~~~~~~~~~~~~~~~~~~~eA~~~~~~al~~~~~ 564 (810)
...++..++.++...|++++|...++.++...+.
T Consensus 377 ~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~ 410 (537)
T 3fp2_A 377 LPEVPTFFAEILTDRGDFDTAIKQYDIAKRLEEV 410 (537)
T ss_dssp CTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHHCCHHHHHHHHHHHHHCCCC
T ss_conf 8599999999998837889999999999870976
No 8
>2y4t_A DNAJ homolog subfamily C member 3; chaperone, endoplasmic reticulum, protein folding, tetratricopeptiderepeat, J domain, unfolded protein respons; 3.00A {Homo sapiens} PDB: 2y4u_A
Probab=1.00 E-value=1 Score=267.98 Aligned_cols=329 Identities=16% Similarity=0.117 Sum_probs=260.2
Q ss_pred CCCCCHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHCCCCCHHHHH
Q ss_conf 99999889999999999998299899999999999839999489999999999859928999999999820999999999
Q 003563 26 KNKLSPGVTKMLGEASLQYAYGNFEQAISLLKEVVRLSPNLPETYNTLGLAHSALGNHKSAFDFYVIAAHLSPKDSALWK 105 (810)
Q Consensus 26 ~~~~~~~~~~~l~~a~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~p~~~~~~~ 105 (810)
....|..+..++..|..++..|++++|+..|++++..+|.++.++..+|.++...|++++|+..+.+++...|.+..++.
T Consensus 19 ~~~~p~~~~~~~~~~~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~ 98 (450)
T 2y4t_A 19 YFQSMADVEKHLELGKKLLAAGQLADALSQFHAAVDGDPDNYIAYYRRATVFLAMGKSKAALPDLTKVIQLKMDFTAARL 98 (450)
T ss_dssp ----CHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHH
T ss_pred CCCCHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHCCCCCHHHHH
T ss_conf 66537899999999999998799999999999999849716899999999999879979999999999844987489999
Q ss_pred HHHHHHHHCCCHHHHHHHHHHHHHCCCCCH---HHHHHH------------HHHHHHCCCHHHHHHHHHHHHHHCCCCHH
Q ss_conf 999999974998999999999998099997---789999------------99999809998999999999986999989
Q 003563 106 QLLTFAVQKGDTAQAMYYIRQAIRAEPKDI---SLRIHL------------ASFYVEIGDYEKAAESYEQIQKLFPDNVD 170 (810)
Q Consensus 106 ~la~~~~~~g~~~~A~~~~~~al~~~p~~~---~~~~~l------------a~~~~~~g~~~~A~~~~~~~l~~~p~~~~ 170 (810)
.+|.++...|++++|+..|++++...|.+. .++..+ |.++...|++++|+..+++++...|.+..
T Consensus 99 ~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~ 178 (450)
T 2y4t_A 99 QRGHLLLKQGKLDEAEDDFKKVLKSNPSENEEKEAQSQLIKSDEMQRLRSQALNAFGSGDYTAAIAFLDKILEVCVWDAE 178 (450)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHTSCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHH
T ss_pred HHHHHHHHCCCHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCCCCHH
T ss_conf 99999998699999999999997249997016889999999999999999999999868999999999999986889769
Q ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHCCCCCCCHHHHHHH-
Q ss_conf 9999999999839947999999998851999999589999999999727999999999999998307998828889999-
Q 003563 171 ATKTGAQLFLKCGQTARSIGILEEYLKVHPSDADLSVIDLLVAILMENNAYEKTLQHIEHAQIVRFSGKELPLKLKVKA- 249 (810)
Q Consensus 171 ~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~l- 249 (810)
++..+|.++...|++++|+..++++++..|.+.. ++..+|.++...|++++|+..+++++.. .+.....+..+
T Consensus 179 ~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~--~~~~l~~~~~~~g~~~~A~~~~~~~~~~----~p~~~~~~~~~~ 252 (450)
T 2y4t_A 179 LRELRAECFIKEGEPRKAISDLKAASKLKNDNTE--AFYKISTLYYQLGDHELSLSEVRECLKL----DQDHKRCFAHYK 252 (450)
T ss_dssp HHHHHHHHHHHTTCGGGGHHHHHHHHHHHCSCHH--HHHHHHHHHHHTTCHHHHHHHHHHHHHH----CTTCHHHHHHHH
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHHHCCCCHH--HHHHHHHHHHHCCCHHHHHHHHHHHHHH----CCCHHHHHHHHH
T ss_conf 9999999998779999999999999986889879--9999999999759999999999999875----998089999999
Q ss_pred -----------HHHHHHCCCHHHHHHHHHHHHCCCCCHH---HHHHHHHHHHHHHCCCCHHHHHHHHHHHHCCCCCCHHH
Q ss_conf -----------9999963998899999998210087036---75899999999984990999999999873359898898
Q 003563 250 -----------GICYLRLGNMEKAEILFADLQWKNAIDH---ADLITEVADTLMSLGHSNSALKYYHFLETNAGTDNGYL 315 (810)
Q Consensus 250 -----------a~~~~~~g~~~~A~~~~~~~~~~~~~~~---~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~ 315 (810)
|.++...|++++|+..+++++...|... ...+..+|.++...|++++|+..+++++.. .|.++.+
T Consensus 253 ~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~-~p~~~~~ 331 (450)
T 2y4t_A 253 QVKKLNKLIESAEELIRDGRYTDATSKYESVMKTEPSIAEYTVRSKERICHCFSKDEKPVEAIRVCSEVLQM-EPDNVNA 331 (450)
T ss_dssp HHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCCSSHHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHH-CTTCHHH
T ss_pred HHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHH-CCCCHHH
T ss_conf 999999999999999871799999999999985087336899999999999999878899999999999884-8454899
Q ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHCC
Q ss_conf 9999999998018999999999998624999999999999999809
Q 003563 316 YLKLAECYLSLKERAHAIMFFYKALDRFEDNIDARLTLASLLLEEA 361 (810)
Q Consensus 316 ~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g 361 (810)
+..+|.++...|++++|+..++++++..|++..++..++.+....+
T Consensus 332 ~~~l~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~ 377 (450)
T 2y4t_A 332 LKDRAEAYLIEEMYDEAIQDYETAQEHNENDQQIREGLEKAQRLLK 377 (450)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHTTSSSCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHCCHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHH
T ss_conf 9999999987037999999999998859352999999999999864
No 9
>2gw1_A Mitochondrial precursor proteins import receptor; TPR, protein transport; 3.00A {Saccharomyces cerevisiae}
Probab=1.00 E-value=1 Score=267.00 Aligned_cols=335 Identities=12% Similarity=0.028 Sum_probs=189.2
Q ss_pred CHHHHHHHHHHHHHCCCHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHCCCCCHHHHHHHHHHH
Q ss_conf 94899999999998599289999999998209999999999999999749989999999999980999977899999999
Q 003563 66 LPETYNTLGLAHSALGNHKSAFDFYVIAAHLSPKDSALWKQLLTFAVQKGDTAQAMYYIRQAIRAEPKDISLRIHLASFY 145 (810)
Q Consensus 66 ~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~ 145 (810)
.+..+..+|.++...|++++|+..|++++..+| ++.++..+|.++...|++++|+..++++++.+|.+..++..+|.++
T Consensus 5 ~a~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p-~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~ 83 (514)
T 2gw1_A 5 YALALKDKGNQFFRNKKYDDAIKYYNWALELKE-DPVFYSNLSACYVSVGDLKKVVEMSTKALELKPDYSKVLLRRASAN 83 (514)
T ss_dssp HHHHHHHHHHHHHHTSCHHHHHHHHHHHHHHCC-CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCSCCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHCCHHHHHHHHHHHHHCCC-CHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHH
T ss_conf 579999987899986027899999999985592-2789986889999885499999999877606937899999888999
Q ss_pred HHCCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHCCCHHH---HHHHHHHHHHHCCCCCCHHHHHHHHHHHHHCCCHH
Q ss_conf 980999899999999998699998999999999998399479---99999998851999999589999999999727999
Q 003563 146 VEIGDYEKAAESYEQIQKLFPDNVDATKTGAQLFLKCGQTAR---SIGILEEYLKVHPSDADLSVIDLLVAILMENNAYE 222 (810)
Q Consensus 146 ~~~g~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~---A~~~~~~~l~~~p~~~~~~~~~~la~~~~~~g~~~ 222 (810)
...|++++|+..|++++...|.+................... ++..++.+... |......................
T Consensus 84 ~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~ 162 (514)
T 2gw1_A 84 EGLGKFADAMFDLSVLSLNGDFNDASIEPMLERNLNKQAMSKLKEKFGDIDTATAT-PTELSTQPAKERKDKQENLPSVT 162 (514)
T ss_dssp HHTTCHHHHHHHHHHHHHSSSCCGGGTHHHHHHHHHHHHHHHHTTC----------------------------CCCCHH
T ss_pred HHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHCCCCHHHHHHHHCCCCCHHH
T ss_conf 98766888999999999559875113789999999999999999999989999876-65126772467886344786158
Q ss_pred HHHHHHHHHHHHHCC-------CCCCCHHHHHHHHHHHHH---CCCHHHHHHHHHHHHC-----C--CC------CHHHH
Q ss_conf 999999999998307-------998828889999999996---3998899999998210-----0--87------03675
Q 003563 223 KTLQHIEHAQIVRFS-------GKELPLKLKVKAGICYLR---LGNMEKAEILFADLQW-----K--NA------IDHAD 279 (810)
Q Consensus 223 ~A~~~~~~~~~~~~~-------~~~~~~~~~~~la~~~~~---~g~~~~A~~~~~~~~~-----~--~~------~~~~~ 279 (810)
.... ....... ..+.....+...|.++.. .|++++|+..+++++. . .| +....
T Consensus 163 ~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 238 (514)
T 2gw1_A 163 SMAS----FFGIFKPELTFANYDESNEADKELMNGLSNLYKRSPESYDKADESFTKAARLFEEQLDKNNEDEKLKEKLAI 238 (514)
T ss_dssp HHHH----HHTTSCCCCCCSSCCSSCHHHHHHHHHHHHHSSCCTTHHHHHHHHHHHHHHHHHHHTTTSTTCHHHHHHHHH
T ss_pred HHHH----HHHHCCHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHCCCCCCCCCCHHHHH
T ss_conf 9999----986258788888725995888999989999876233229999999999998866542238100114827899
Q ss_pred HHHHHHHHHHHCCCCHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHH
Q ss_conf 89999999998499099999999987335989889899999999980189999999999986249999999999999998
Q 003563 280 LITEVADTLMSLGHSNSALKYYHFLETNAGTDNGYLYLKLAECYLSLKERAHAIMFFYKALDRFEDNIDARLTLASLLLE 359 (810)
Q Consensus 280 ~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~ 359 (810)
.+..+|.++...|++++|+..+++++.. .|. ..++..+|.++...|++++|+..+++++...|.+..++..++.++..
T Consensus 239 ~~~~~~~~~~~~~~~~~A~~~~~~~l~~-~~~-~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~ 316 (514)
T 2gw1_A 239 SLEHTGIFKFLKNDPLGAHEDIKKAIEL-FPR-VNSYIYMALIMADRNDSTEYYNYFDKALKLDSNNSSVYYHRGQMNFI 316 (514)
T ss_dssp HHHHHHHHHHHSSCHHHHHHHHHHHHHH-CCC-HHHHHHHHHHHHTSSCCTTGGGHHHHHHTTCTTCTHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHHH-CCC-HHHHHHHHHHHHHCCCHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHH
T ss_conf 9999999999878999999999999863-864-89999999999988889999999999861386778999999999998
Q ss_pred CCCHHHHHHHCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHH
Q ss_conf 0998889872599988785347888898145678999999799983599656786556655
Q 003563 360 EAKEEEAITLLSPPKDLDSLDMNSDKSNPWWLNEKIIMKLCHIYRAKGMPEDFVDAIFPLV 420 (810)
Q Consensus 360 ~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~l 420 (810)
.|++++|+..+++++...|.+. .++..+|.++...|++++|+..+..++
T Consensus 317 ~~~~~~A~~~~~~~~~~~~~~~------------~~~~~l~~~~~~~~~~~~A~~~~~~~~ 365 (514)
T 2gw1_A 317 LQNYDQAGKDFDKAKELDPENI------------FPYIQLACLAYRENKFDDCETLFSEAK 365 (514)
T ss_dssp TTCTTHHHHHHHHHHHTCSSCS------------HHHHHHHHHTTTTTCHHHHHHHHHHHH
T ss_pred HCCHHHHHHHHHHHHHHCHHHH------------HHHHHHHHHHHHCCCHHHHHHHHHHHH
T ss_conf 0779999999999987385028------------999999999998689999999999999
No 10
>2y4t_A DNAJ homolog subfamily C member 3; chaperone, endoplasmic reticulum, protein folding, tetratricopeptiderepeat, J domain, unfolded protein respons; 3.00A {Homo sapiens} PDB: 2y4u_A
Probab=1.00 E-value=1 Score=265.29 Aligned_cols=339 Identities=17% Similarity=0.159 Sum_probs=305.4
Q ss_pred CCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHH
Q ss_conf 99899999999999839999489999999999859928999999999820999999999999999974998999999999
Q 003563 47 GNFEQAISLLKEVVRLSPNLPETYNTLGLAHSALGNHKSAFDFYVIAAHLSPKDSALWKQLLTFAVQKGDTAQAMYYIRQ 126 (810)
Q Consensus 47 g~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~ 126 (810)
+....+...+.+++..+|.++..+..+|..+...|++++|+..|.+++...|.++.++..+|.++...|++++|+..+++
T Consensus 6 ~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~ 85 (450)
T 2y4t_A 6 HHSSGVDLGTENLYFQSMADVEKHLELGKKLLAAGQLADALSQFHAAVDGDPDNYIAYYRRATVFLAMGKSKAALPDLTK 85 (450)
T ss_dssp -----------------CHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred CCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHCCCHHHHHHHHHH
T ss_conf 45544465642356653789999999999999879999999999999984971689999999999987997999999999
Q ss_pred HHHCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCCCCH---HHHHHH------------HHHHHHCCCHHHHHHH
Q ss_conf 9980999977899999999980999899999999998699998---999999------------9999983994799999
Q 003563 127 AIRAEPKDISLRIHLASFYVEIGDYEKAAESYEQIQKLFPDNV---DATKTG------------AQLFLKCGQTARSIGI 191 (810)
Q Consensus 127 al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~---~~~~~l------------a~~~~~~g~~~~A~~~ 191 (810)
+++.+|.+..++..+|.++...|++++|+..|++++...|.+. .++..+ |.++...|++++|+..
T Consensus 86 al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~A~~~ 165 (450)
T 2y4t_A 86 VIQLKMDFTAARLQRGHLLLKQGKLDEAEDDFKKVLKSNPSENEEKEAQSQLIKSDEMQRLRSQALNAFGSGDYTAAIAF 165 (450)
T ss_dssp HHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTSCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCHHHHHHH
T ss_pred HHHCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHH
T ss_conf 98449874899999999999869999999999999724999701688999999999999999999999986899999999
Q ss_pred HHHHHHHCCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHC
Q ss_conf 99988519999995899999999997279999999999999983079988288899999999963998899999998210
Q 003563 192 LEEYLKVHPSDADLSVIDLLVAILMENNAYEKTLQHIEHAQIVRFSGKELPLKLKVKAGICYLRLGNMEKAEILFADLQW 271 (810)
Q Consensus 192 ~~~~l~~~p~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~ 271 (810)
++++++..|.+.. ++..+|.++...|++++|+..+++++.. .+....++..+|.++...|++++|+..+++++.
T Consensus 166 ~~~~~~~~~~~~~--~~~~l~~~~~~~g~~~~A~~~~~~~~~~----~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 239 (450)
T 2y4t_A 166 LDKILEVCVWDAE--LRELRAECFIKEGEPRKAISDLKAASKL----KNDNTEAFYKISTLYYQLGDHELSLSEVRECLK 239 (450)
T ss_dssp HHHHHHHCTTCHH--HHHHHHHHHHHTTCGGGGHHHHHHHHHH----HCSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHCCCCHH--HHHHHHHHHHHCCCHHHHHHHHHHHHHH----CCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHH
T ss_conf 9999986889769--9999999998779999999999999986----889879999999999975999999999999987
Q ss_pred CCCCHHHHHHHHH------------HHHHHHCCCCHHHHHHHHHHHHCCCCCCH----HHHHHHHHHHHHCCCHHHHHHH
Q ss_conf 0870367589999------------99999849909999999998733598988----9899999999980189999999
Q 003563 272 KNAIDHADLITEV------------ADTLMSLGHSNSALKYYHFLETNAGTDNG----YLYLKLAECYLSLKERAHAIMF 335 (810)
Q Consensus 272 ~~~~~~~~~~~~l------------a~~~~~~~~~~~A~~~~~~~~~~~~~~~~----~~~~~la~~~~~~g~~~~A~~~ 335 (810)
..|. ....+..+ |.++...|++++|+..|++++.. .|.++ ..+..+|.++...|++++|+..
T Consensus 240 ~~p~-~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~~l~~-~p~~~~~~~~~~~~l~~~~~~~g~~~~A~~~ 317 (450)
T 2y4t_A 240 LDQD-HKRCFAHYKQVKKLNKLIESAEELIRDGRYTDATSKYESVMKT-EPSIAEYTVRSKERICHCFSKDEKPVEAIRV 317 (450)
T ss_dssp HCTT-CHHHHHHHHHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH-CCSSHHHHHHHHHHHHHHHHTTTCHHHHHHH
T ss_pred HCCC-HHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHC-CCCCHHHHHHHHHHHHHHHHHCCCHHHHHHH
T ss_conf 5998-0899999999999999999999998717999999999999850-8733689999999999999987889999999
Q ss_pred HHHHHHHCCCCHHHHHHHHHHHHHCCCHHHHHHHCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHH
Q ss_conf 9999862499999999999999980998889872599988785347888898145678999999799983
Q 003563 336 FYKALDRFEDNIDARLTLASLLLEEAKEEEAITLLSPPKDLDSLDMNSDKSNPWWLNEKIIMKLCHIYRA 405 (810)
Q Consensus 336 ~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~ 405 (810)
+++++...|++..++..+|.++...|++++|+..++++++..|.+. .++..++.+...
T Consensus 318 ~~~a~~~~p~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~p~~~------------~~~~~l~~~~~~ 375 (450)
T 2y4t_A 318 CSEVLQMEPDNVNALKDRAEAYLIEEMYDEAIQDYETAQEHNENDQ------------QIREGLEKAQRL 375 (450)
T ss_dssp HHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTSSSCH------------HHHHHHHHHHHH
T ss_pred HHHHHHHCCCCHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHCCCHH------------HHHHHHHHHHHH
T ss_conf 9999884845489999999999870379999999999988593529------------999999999998
Done!