Query 003566
Match_columns 810
No_of_seqs 609 out of 4633
Neff 8.1
Searched_HMMs 29240
Date Tue Mar 26 18:26:43 2013
Command hhsearch -i /local_scratch/syshi/lefta3m/003566.a3m -d /local_scratch/syshi/pdb70.hhm -v 0 -o /local_scratch/syshi/H1_1614-1618//hhsearch_pdb/003566hhsearch_pdb
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 4aoj_A High affinity nerve gro 1.0 1 1 406.6 22.4 257 456-726 41-319 (329)
2 4asz_A BDNF/NT-3 growth factor 1.0 1 1 405.1 18.7 258 456-727 13-290 (299)
3 3omv_A RAF proto-oncogene seri 1.0 1 1 402.3 20.0 255 455-726 35-300 (307)
4 4gt4_A Tyrosine-protein kinase 1.0 1 1 401.3 18.5 254 457-724 27-304 (308)
5 4b9d_A Serine/threonine-protei 1.0 1 1 395.5 16.1 246 456-718 24-275 (350)
6 4ase_A Vascular endothelial gr 1.0 1 1 391.5 18.5 266 448-726 56-347 (353)
7 4fie_A Serine/threonine-protei 1.0 1 1 390.6 21.2 241 456-715 151-397 (423)
8 4fih_A Serine/threonine-protei 1.0 1 1 389.6 20.0 241 456-715 74-320 (346)
9 4g3f_A NF-kappa-beta-inducing 1.0 1 1 386.5 19.5 253 455-726 57-316 (336)
10 4aw0_A HPDK1, 3-phosphoinositi 1.0 1 1 383.8 18.6 243 456-715 32-281 (311)
No 1
>4aoj_A High affinity nerve growth factor receptor; transferase, inhibitor; HET: V4Z; 2.75A {Homo sapiens}
Probab=1.00 E-value=1 Score=406.58 Aligned_cols=257 Identities=25% Similarity=0.425 Sum_probs=216.1
Q ss_pred CCCCCCEEECCCCCEEEEEEEEC-------CEEEEEEEECCCCCCCHHHHHHHHHHHHHCCCCCEEEEECEECCCC--EE
Q ss_conf 17644402236770899999989-------9389999970568400598999999997058995665603005988--27
Q 003566 456 LSFSENLRIGMGGYGTVYKGTFH-------HTFAAVKVLQSKGNIQNKQFLQELEVLSKIRHPHLLLLLGACPDHG--CL 526 (810)
Q Consensus 456 ~~f~~~~~iG~G~~g~Vyk~~~~-------~~~vAvK~l~~~~~~~~~~~~~E~~iL~~l~Hpniv~l~g~~~~~~--~l 526 (810)
.+|....+||+|+||.||+|.+. +..||||+++.......+.|.+|+.+|++++|||||+++|+|.+.. +|
T Consensus 41 ~d~~l~~~LG~G~fG~Vy~a~~~~~~~~~~~~~vAvK~l~~~~~~~~~~f~~E~~il~~l~HpnIV~l~g~~~~~~~~~l 120 (329)
T 4aoj_A 41 RDIVLKWELGEGAFGKVFLAECHNLLPEQDKMLVAVKALKEASESARQDFQREAELLTMLQHQHIVRFFGVCTEGRPLLM 120 (329)
T ss_dssp GGEEEEEEEEECSSEEEEEEEESSSCC---CEEEEEEEESCCSHHHHHHHHHHHHHHTTCCCTTBCCEEEEECSSSSEEE
T ss_pred HHEEEEEEECCCCCCEEEEEEECCCCCCCCCEEEEEEEECCCCHHHHHHHHHHHHHHHHCCCCCCCCEEEEEEECCEEEE
T ss_conf 99288779714778489989987866577896999999775797999999999999985899899969899998998999
Q ss_pred EEEECCCCCHHHHHHHCCC------------CCCCCHHHHHHHHHHHHHHHHHHHHCCCCCEEECCCCCCCEEECCCCCE
Q ss_conf 9995248997788641299------------9999989999999999999999762599888825899985686489812
Q 003566 527 VYEYMENGSLEDRLYRKNN------------TPPIPWFERYRIAWEVASALAFLHNTKPKPIIHRDMKPGNILLDHNLVS 594 (810)
Q Consensus 527 V~Ey~~~gsL~~~l~~~~~------------~~~l~~~~~~~i~~qia~aL~~LH~~~~~~iiHrDLKp~NILl~~~~~~ 594 (810)
|||||++|+|.++|..... ..+++|..++.|+.|++.||.|||+.+ |+||||||+||||+.++.+
T Consensus 121 V~Ey~~~G~L~~~l~~~~~~~~~~~~~~~~~~~~l~~~~~~~i~~qia~gl~yLH~~~---iiHRDLKp~NILl~~~~~~ 197 (329)
T 4aoj_A 121 VFEYMRHGDLNRFLRSHGPDAKLLAGGEDVAPGPLGLGQLLAVASQVAAGMVYLAGLH---FVHRDLATRNCLVGQGLVV 197 (329)
T ss_dssp EEECCTTCBHHHHHHTSSCC-----------CCSCCHHHHHHHHHHHHHHHHHHHHTT---CCCSCCCGGGEEEETTTEE
T ss_pred EEECCCCCCHHHHHHHCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHCCC---EECCCCCHHHEEECCCCCE
T ss_conf 9982799939999986075410012211245788999999999999999999984088---4226666764898899968
Q ss_pred EEEEECCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHH-CCCCCCCCCHHHHHHCH
Q ss_conf 89431141014899986444433567756755569522226988973123559999999983-79974332102443100
Q 003566 595 KIGDVGLSTMLNSDPSFVSTTYKNTGPVGTLCYIDPEYQRTGLISPKSDVYAYGMVILQLLT-AKPAIAITHKVETAIDE 673 (810)
Q Consensus 595 kI~DFGla~~~~~~~~~~~~~~~~~~~~gt~~Y~aPE~~~~~~~~~~sDi~SlGvil~ellt-g~~P~~~~~~~~~~~~~ 673 (810)
||+|||+|+.+....... ......||+.|||||++.+..|+.++|||||||+||||+| |++||......+
T Consensus 198 Ki~DFGla~~~~~~~~~~----~~~~~~gt~~ymAPE~~~~~~~~~~sDvwS~Gvvl~Ellt~G~~Pf~~~~~~~----- 268 (329)
T 4aoj_A 198 KIGDFGMSRDIYSTDYYR----VGGRTMLPIRWMPPESILYRKFTTESDVWSFGVVLWEIFTYGKQPWYQLSNTE----- 268 (329)
T ss_dssp EECCCC--------------------CCCCGGGCCHHHHTTCCCCHHHHHHHHHHHHHHHHTTSCCTTCSSCHHH-----
T ss_pred EECCCCCCEECCCCCCCE----ECCCCCCCCCCCCHHHHCCCCCCCCCCCCCHHHHHHHHHCCCCCCCCCCCHHH-----
T ss_conf 976660333656787530----04764556566582654479999663001057899999828999999989999-----
Q ss_pred HHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHCCCCCCCCCCCHHHHHHHHHH
Q ss_conf 03688743207999957899999999996400289999711001258987897
Q 003566 674 DNLAEILDAQAGDWPIKETKELAALGLSCAELRRKDRPDLKNQVLPVLERLKE 726 (810)
Q Consensus 674 ~~l~~~ld~~~~~~p~~~~~~l~~Li~~Cl~~dp~~RPs~~~~v~~~L~~l~~ 726 (810)
.+..+........|..++..+.+|+.+||+.+|.+||++. +++..|+.+..
T Consensus 269 -~~~~i~~g~~~~~p~~~~~~~~~li~~cl~~dP~~RPs~~-ei~~~L~~l~~ 319 (329)
T 4aoj_A 269 -AIDCITQGRELERPRACPPEVYAIMRGCWQREPQQRHSIK-DVHARLQALAQ 319 (329)
T ss_dssp -HHHHHHHTCCCCCCTTCCHHHHHHHHHHCCSSTTTSCCHH-HHHHHHHHHHH
T ss_pred -HHHHHHCCCCCCCCCCCCHHHHHHHHHHCCCCHHHCCCHH-HHHHHHHHHHH
T ss_conf -9999980898998644639999999997475965792999-99999998745
No 2
>4asz_A BDNF/NT-3 growth factors receptor; transferase, TRKA, TRKB; 1.70A {Homo sapiens} PDB: 4at3_A* 4at4_A* 4at5_A* 3v5q_A*
Probab=1.00 E-value=1 Score=405.11 Aligned_cols=258 Identities=24% Similarity=0.410 Sum_probs=216.4
Q ss_pred CCCCCCEEECCCCCEEEEEEEEC-------CEEEEEEEECCCCCCCHHHHHHHHHHHHHCCCCCEEEEECEECCCC--EE
Q ss_conf 17644402236770899999989-------9389999970568400598999999997058995665603005988--27
Q 003566 456 LSFSENLRIGMGGYGTVYKGTFH-------HTFAAVKVLQSKGNIQNKQFLQELEVLSKIRHPHLLLLLGACPDHG--CL 526 (810)
Q Consensus 456 ~~f~~~~~iG~G~~g~Vyk~~~~-------~~~vAvK~l~~~~~~~~~~~~~E~~iL~~l~Hpniv~l~g~~~~~~--~l 526 (810)
.+|....+||+|+||.||+|.+. +..||||+++.......+.|.+|+.+|++++|||||+++|+|.+.. +|
T Consensus 13 ~~~~l~~~lG~G~fG~Vy~a~~~~~~~~~~~~~vAvK~l~~~~~~~~~~f~~E~~il~~l~HpnIV~l~g~~~~~~~~~l 92 (299)
T 4asz_A 13 HNIVLKRELGEGAFGKVFLAECYNLCPEQDKILVAVKTLKDASDNARKDFHREAELLTNLQHEHIVKFYGVCVEGDPLIM 92 (299)
T ss_dssp GGEEEEEEEEC--CCCEEEEEECSCC----CEEEEEEEECSCCHHHHHHHHHHHHHHTTCCCTTBCCEEEEECSSSSEEE
T ss_pred HHEEEEEEEEECCCCEEEEEEECCCCCCCCCEEEEEEEECCCCHHHHHHHHHHHHHHHHCCCCCCCCEEEEEEECCEEEE
T ss_conf 89298249820788299999987766677887999999677785899999999999985899888628799956998999
Q ss_pred EEEECCCCCHHHHHHHCC----------CCCCCCHHHHHHHHHHHHHHHHHHHHCCCCCEEECCCCCCCEEECCCCCEEE
Q ss_conf 999524899778864129----------9999998999999999999999976259988882589998568648981289
Q 003566 527 VYEYMENGSLEDRLYRKN----------NTPPIPWFERYRIAWEVASALAFLHNTKPKPIIHRDMKPGNILLDHNLVSKI 596 (810)
Q Consensus 527 V~Ey~~~gsL~~~l~~~~----------~~~~l~~~~~~~i~~qia~aL~~LH~~~~~~iiHrDLKp~NILl~~~~~~kI 596 (810)
|||||++|+|.++|...+ ....++|..++.|+.|++.||.|||+.+ |+||||||+|||++.++.+||
T Consensus 93 V~Ey~~~G~L~~~l~~~~~~~~~~~~~~~~~~l~~~~~~~i~~qia~gl~yLH~~~---iiHRDlKp~NILl~~~~~~Ki 169 (299)
T 4asz_A 93 VFEYMKHGDLNKFLRAHGPDAVLMAEGNPPTELTQSQMLHIAQQIAAGMVYLASQH---FVHRDLATRNCLVGENLLVKI 169 (299)
T ss_dssp EEECCTTCBHHHHHHHTSHHHHHC----CCCCCCHHHHHHHHHHHHHHHHHHHHTT---CCCSCCSGGGEEECGGGCEEE
T ss_pred EEECCCCCCHHHHHHHCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHCC---CCCCCCCHHHEEECCCCCEEE
T ss_conf 99858999689999860864211123577788999999999999999999997599---046765776389879986898
Q ss_pred EEECCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHH-CCCCCCCCCHHHHHHCHHH
Q ss_conf 431141014899986444433567756755569522226988973123559999999983-7997433210244310003
Q 003566 597 GDVGLSTMLNSDPSFVSTTYKNTGPVGTLCYIDPEYQRTGLISPKSDVYAYGMVILQLLT-AKPAIAITHKVETAIDEDN 675 (810)
Q Consensus 597 ~DFGla~~~~~~~~~~~~~~~~~~~~gt~~Y~aPE~~~~~~~~~~sDi~SlGvil~ellt-g~~P~~~~~~~~~~~~~~~ 675 (810)
+|||+|+........ .......||+.|||||++.++.|+.++|||||||+||||+| |++||...... ..
T Consensus 170 ~DFGla~~~~~~~~~----~~~~~~~gt~~ymAPE~~~~~~~~~k~DVwS~Gvvl~Ellt~G~~Pf~~~~~~------~~ 239 (299)
T 4asz_A 170 GDFGMSRDVYSTDYY----RVGGHTMLPIRWMPPESIMYRKFTTESDVWSLGVVLWEIFTYGKQPWYQLSNN------EV 239 (299)
T ss_dssp CCCSCHHHHTGGGCE----EETTTEEECGGGCCHHHHHHCCCCHHHHHHHHHHHHHHHHTTTCCTTTTSCHH------HH
T ss_pred CCCCCCEECCCCCCE----EECCCEECCHHHCCHHHHCCCCCCCHHHHHHHHHHHHHHHCCCCCCCCCCCHH------HH
T ss_conf 873001006788741----66475134701038898707999703667788999999980899999998999------99
Q ss_pred HHHHHHHCCCCCCHHHHHHHHHHHHHHHHHCCCCCCCCCCCHHHHHHHHHHH
Q ss_conf 6887432079999578999999999964002899997110012589878974
Q 003566 676 LAEILDAQAGDWPIKETKELAALGLSCAELRRKDRPDLKNQVLPVLERLKEV 727 (810)
Q Consensus 676 l~~~ld~~~~~~p~~~~~~l~~Li~~Cl~~dp~~RPs~~~~v~~~L~~l~~~ 727 (810)
+..+........|..++.++.+|+.+||+.+|.+||++. ++...|+.+...
T Consensus 240 ~~~i~~~~~~~~p~~~~~~~~~li~~cl~~dP~~RPs~~-~i~~~L~~~~~~ 290 (299)
T 4asz_A 240 IECITQGRVLQRPRTCPQEVYELMLGCWQREPHMRKNIK-GIHTLLQNLAKA 290 (299)
T ss_dssp HHHHHHTCCCCCCTTCCHHHHHHHHHHTCSSGGGSCCHH-HHHHHHHHHHHH
T ss_pred HHHHHCCCCCCCCCCCHHHHHHHHHHHCCCCHHHCCCHH-HHHHHHHHHHHC
T ss_conf 999980898899741439999999997687966892999-999999877763
No 3
>3omv_A RAF proto-oncogene serine/threonine-protein kinas; serine/threonine-protein kinase, transferase; HET: SM5; 4.00A {Homo sapiens}
Probab=1.00 E-value=1 Score=402.28 Aligned_cols=255 Identities=31% Similarity=0.491 Sum_probs=207.1
Q ss_pred HCCCCCCEEECCCCCEEEEEEEECCEEEEEEEECCCC--CCCHHHHHHHHHHHHHCCCCCEEEEECEECCCC-EEEEEEC
Q ss_conf 2176444022367708999999899389999970568--400598999999997058995665603005988-2799952
Q 003566 455 TLSFSENLRIGMGGYGTVYKGTFHHTFAAVKVLQSKG--NIQNKQFLQELEVLSKIRHPHLLLLLGACPDHG-CLVYEYM 531 (810)
Q Consensus 455 ~~~f~~~~~iG~G~~g~Vyk~~~~~~~vAvK~l~~~~--~~~~~~~~~E~~iL~~l~Hpniv~l~g~~~~~~-~lV~Ey~ 531 (810)
..++....+||+|+||.||+|.+.+ .||||+++... ....+.|.+|+.+|++++|||||+++|+|.+.. +||||||
T Consensus 35 ~~~l~l~~~iG~G~fG~Vy~~~~~~-~vAvK~~~~~~~~~~~~~~f~~E~~il~~l~HpNIV~l~g~~~~~~~~iVmEy~ 113 (307)
T 3omv_A 35 ASEVMLSTRIGSGSFGTVYKGKWHG-DVAVKILKVVDPTPEQFQAFRNEVAVLRKTRHVNILLFMGYMTKDNLAIVTQWC 113 (307)
T ss_dssp TTSCCEEEECCCCSSSEEEEEESSS-EEEEEECCCSSCCHHHHHHHHHHHHHHTTCCCTTBCCEEEEECSSSCEEEEECC
T ss_pred HHHEEEEEEEEECCCCEEEEEEECC-CEEEEEEEECCCCHHHHHHHHHHHHHHHHCCCCCEEEEEEEEECCEEEEEEECC
T ss_conf 7994984498208886899999899-689999972689999999999999999858998874699999789589999748
Q ss_pred CCCCHHHHHHHCCCCCCCCHHHHHHHHHHHHHHHHHHHHCCCCCEEECCCCCCCEEECCCCCEEEEEECCCCCCCCCCCC
Q ss_conf 48997788641299999998999999999999999976259988882589998568648981289431141014899986
Q 003566 532 ENGSLEDRLYRKNNTPPIPWFERYRIAWEVASALAFLHNTKPKPIIHRDMKPGNILLDHNLVSKIGDVGLSTMLNSDPSF 611 (810)
Q Consensus 532 ~~gsL~~~l~~~~~~~~l~~~~~~~i~~qia~aL~~LH~~~~~~iiHrDLKp~NILl~~~~~~kI~DFGla~~~~~~~~~ 611 (810)
+||+|.++|.... ..++|..+..|+.|++.||.|||+.+ ||||||||+||||+.++.+||+|||+|+........
T Consensus 114 ~gGsL~~~l~~~~--~~l~~~~~~~i~~qia~gL~yLH~~~---IiHRDlKp~NILl~~~~~~Ki~DFGla~~~~~~~~~ 188 (307)
T 3omv_A 114 EGSSLYKHLHVQE--TKFQMFQLIDIARQTAQGMDYLHAKN---IIHRDMKSNNIFLHEGLTVKIGDFGLATVKSRWSGS 188 (307)
T ss_dssp SSCBHHHHHHTSC--CCCCHHHHHHHHHHHHHHHHHHHHTT---CBCSCCCSSSEEEETTEEEEECCCSSCBC-------
T ss_pred CCCCHHHHHHHCC--CCCCHHHHHHHHHHHHHHHHHHHHCC---CCCCCCCHHHEEECCCCCEEEEECCCCEECCCCCCC
T ss_conf 9987889875248--99999999999999999999997799---527855789978889990899441575424667764
Q ss_pred CCCCCCCCCCCCCCCCCCCCCCCC---CCCCCCCHHHHHHHHHHHHHHCCCCCCCCCHHHHHHCHHHHHHHHH-----HC
Q ss_conf 444433567756755569522226---9889731235599999999837997433210244310003688743-----20
Q 003566 612 VSTTYKNTGPVGTLCYIDPEYQRT---GLISPKSDVYAYGMVILQLLTAKPAIAITHKVETAIDEDNLAEILD-----AQ 683 (810)
Q Consensus 612 ~~~~~~~~~~~gt~~Y~aPE~~~~---~~~~~~sDi~SlGvil~elltg~~P~~~~~~~~~~~~~~~l~~~ld-----~~ 683 (810)
......+||+.|||||++.. +.|+.++|||||||+||||+||++||........ +...+. +.
T Consensus 189 ----~~~~~~~GT~~ymAPE~l~~~~~~~y~~ksDVwS~Gvvl~Elltg~~Pf~~~~~~~~------~~~~~~~~~~~p~ 258 (307)
T 3omv_A 189 ----QQVEQPTGSVLWMAPEVIRMQDNNPFSFQSDVYSYGIVLYELMTGELPYSHINNRDQ------IIFMVGRGYASPD 258 (307)
T ss_dssp ---------CCCCTTSCCHHHHHCCSSCCCCHHHHHHHHHHHHHHHHHSSCTTTTCCCHHH------HHHHHHTTCCCCC
T ss_pred ----EEECCCCCCCCCCCHHHHHCCCCCCCCCHHHHHHHHHHHHHHHHCCCCCCCCCHHHH------HHHHHHCCCCCCC
T ss_conf ----031564468772498786146899878687757289999999978899899996999------9999965888887
Q ss_pred CCCCCHHHHHHHHHHHHHHHHHCCCCCCCCCCCHHHHHHHHHH
Q ss_conf 7999957899999999996400289999711001258987897
Q 003566 684 AGDWPIKETKELAALGLSCAELRRKDRPDLKNQVLPVLERLKE 726 (810)
Q Consensus 684 ~~~~p~~~~~~l~~Li~~Cl~~dp~~RPs~~~~v~~~L~~l~~ 726 (810)
....+..++..+.+|+.+||+.+|.+||++. +++..|+.|+.
T Consensus 259 ~~~~~~~~~~~l~~li~~cl~~dP~~RPs~~-ei~~~Le~l~~ 300 (307)
T 3omv_A 259 LSKLYKNCPKAMKRLVADCVKKVKEERPLFP-QILSSIELLQH 300 (307)
T ss_dssp STTSCTTSCHHHHHHHHHHTCSSSTTSCCHH-HHHHHHHHHHT
T ss_pred CCCCCCCCHHHHHHHHHHHCCCCHHHCCCHH-HHHHHHHHHHC
T ss_conf 2003544569999999997577976890989-99999999745
No 4
>4gt4_A Tyrosine-protein kinase transmembrane receptor RO; ATP binding, phosphorylation, transferase; 2.41A {Homo sapiens} PDB: 3zzw_A
Probab=1.00 E-value=1 Score=401.30 Aligned_cols=254 Identities=21% Similarity=0.352 Sum_probs=208.5
Q ss_pred CCCCCEEECCCCCEEEEEEEEC-------CEEEEEEEECCCC-CCCHHHHHHHHHHHHHCCCCCEEEEECEECCCC--EE
Q ss_conf 7644402236770899999989-------9389999970568-400598999999997058995665603005988--27
Q 003566 457 SFSENLRIGMGGYGTVYKGTFH-------HTFAAVKVLQSKG-NIQNKQFLQELEVLSKIRHPHLLLLLGACPDHG--CL 526 (810)
Q Consensus 457 ~f~~~~~iG~G~~g~Vyk~~~~-------~~~vAvK~l~~~~-~~~~~~~~~E~~iL~~l~Hpniv~l~g~~~~~~--~l 526 (810)
++....+||+|+||.||+|.+. +..||||+++... ....+.|.+|+.+|++++|||||+++|+|.+.. +|
T Consensus 27 ~~~~~~~lG~G~fG~Vykg~~~~~~~~~~~~~VAvK~l~~~~~~~~~~~f~~E~~il~~l~HpNIV~l~g~~~~~~~~~l 106 (308)
T 4gt4_A 27 AVRFMEELGEDRFGKVYKGHLFGPAPGEQTQAVAIKTLKDKAEGPLREEFRHEAMLRARLQHPNVVCLLGVVTKDQPLSM 106 (308)
T ss_dssp GEEEEEEEEECSSCEEEEEEEC-------CEEEEEEECCC-CCC-CHHHHHHHHHHHHHCCCTTBCCEEEEECSSSSCEE
T ss_pred HCEEEEEECCCCCCEEEEEEECCCCCCCCCEEEEEEEECCCCCHHHHHHHHHHHHHHHHCCCCCCCCCCEEEEECCEEEE
T ss_conf 88586691358884899999857765888869999998801496899999999999985899898773649988998899
Q ss_pred EEEECCCCCHHHHHHHCCC-------------CCCCCHHHHHHHHHHHHHHHHHHHHCCCCCEEECCCCCCCEEECCCCC
Q ss_conf 9995248997788641299-------------999998999999999999999976259988882589998568648981
Q 003566 527 VYEYMENGSLEDRLYRKNN-------------TPPIPWFERYRIAWEVASALAFLHNTKPKPIIHRDMKPGNILLDHNLV 593 (810)
Q Consensus 527 V~Ey~~~gsL~~~l~~~~~-------------~~~l~~~~~~~i~~qia~aL~~LH~~~~~~iiHrDLKp~NILl~~~~~ 593 (810)
|||||++|+|.++|..... ...++|..++.|+.||+.||.|||+.+ ||||||||+||||+.++.
T Consensus 107 V~Ey~~~G~L~~~L~~~~~~~~~~~~~~~~~~~~~l~~~~~~~i~~qia~gl~yLH~~~---iiHRDLK~~NILl~~~~~ 183 (308)
T 4gt4_A 107 IFSYCSHGDLHEFLVMRSPHSDVGSTDDDRTVKSALEPPDFVHLVAQIAAGMEYLSSHH---VVHKDLATRNVLVYDKLN 183 (308)
T ss_dssp EEECCSSCBHHHHHHTTCSSCCCC-----CCEECCCCHHHHHHHHHHHHHHHHHHHHTT---CCCSCCSGGGEEECGGGC
T ss_pred EEECCCCCCHHHHHHHHCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHCC---CCCCCCCCCCEEECCCCC
T ss_conf 99818999499999862765433332211112468999999999999999999998689---977873623068879997
Q ss_pred EEEEEECCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHH-CCCCCCCCCHHHHHHC
Q ss_conf 289431141014899986444433567756755569522226988973123559999999983-7997433210244310
Q 003566 594 SKIGDVGLSTMLNSDPSFVSTTYKNTGPVGTLCYIDPEYQRTGLISPKSDVYAYGMVILQLLT-AKPAIAITHKVETAID 672 (810)
Q Consensus 594 ~kI~DFGla~~~~~~~~~~~~~~~~~~~~gt~~Y~aPE~~~~~~~~~~sDi~SlGvil~ellt-g~~P~~~~~~~~~~~~ 672 (810)
+||+|||+|+.+...... .......||+.|||||++.++.|+.++|||||||+||||+| |++||......
T Consensus 184 ~Ki~DFGlar~~~~~~~~----~~~~~~~gt~~ymAPE~l~~~~~s~ksDVwSfGvvl~El~t~g~~Pf~~~~~~----- 254 (308)
T 4gt4_A 184 VKISDLGLFREVYAADYY----KLLGNSLLPIRWMAPEAIMYGKFSIDSDIWSYGVVLWEVFSYGLQPYCGYSNQ----- 254 (308)
T ss_dssp EEECCSCCBCGGGGGGCB----CSSSSSCBCGGGCCHHHHHHCCCCHHHHHHHHHHHHHHHHTTTCCTTTTCCHH-----
T ss_pred EEECCCCCCEECCCCCCE----EEECCCCCCCCCCCHHHHHCCCCCCCCHHHHHHHHHHHHHHCCCCCCCCCCHH-----
T ss_conf 898876020233677740----47345125776569899827999963000157999999996899999998999-----
Q ss_pred HHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHCCCCCCCCCCCHHHHHHHH
Q ss_conf 0036887432079999578999999999964002899997110012589878
Q 003566 673 EDNLAEILDAQAGDWPIKETKELAALGLSCAELRRKDRPDLKNQVLPVLERL 724 (810)
Q Consensus 673 ~~~l~~~ld~~~~~~p~~~~~~l~~Li~~Cl~~dp~~RPs~~~~v~~~L~~l 724 (810)
..+..+........|..++..+.+|+.+||+.+|.+||++. +|+..|+.+
T Consensus 255 -~~~~~i~~~~~~~~p~~~~~~~~~li~~C~~~dP~~RPs~~-ei~~~L~a~ 304 (308)
T 4gt4_A 255 -DVVEMIRNRQVLPCPDDCPAWVYALMIECWNEFPSRRPRFK-DIHSRLRAW 304 (308)
T ss_dssp -HHHHHHHTTCCCCCCTTCCHHHHHHHHHHTCSSGGGSCCHH-HHHHHHHTS
T ss_pred -HHHHHHHCCCCCCCCCCCHHHHHHHHHHHCCCCHHHCCCHH-HHHHHHHHC
T ss_conf -99999981998999620369999999997587965792999-999999853
No 5
>4b9d_A Serine/threonine-protein kinase NEK1; transferase, inhibitor; HET: CK7; 1.90A {Homo sapiens} PDB: 4apc_A*
Probab=1.00 E-value=1 Score=395.48 Aligned_cols=246 Identities=23% Similarity=0.355 Sum_probs=206.6
Q ss_pred CCCCCCEEECCCCCEEEEEEEEC--CEEEEEEEECCCC--CCCHHHHHHHHHHHHHCCCCCEEEEECEECCCC--EEEEE
Q ss_conf 17644402236770899999989--9389999970568--400598999999997058995665603005988--27999
Q 003566 456 LSFSENLRIGMGGYGTVYKGTFH--HTFAAVKVLQSKG--NIQNKQFLQELEVLSKIRHPHLLLLLGACPDHG--CLVYE 529 (810)
Q Consensus 456 ~~f~~~~~iG~G~~g~Vyk~~~~--~~~vAvK~l~~~~--~~~~~~~~~E~~iL~~l~Hpniv~l~g~~~~~~--~lV~E 529 (810)
++|....+||+|+||.||+|.+. +..||||++.... ......|.+|+.+|++++|||||++++++.+.. |||||
T Consensus 24 e~Y~~~~~lG~G~fg~V~~a~~~~~~~~vAiK~i~~~~~~~~~~~~~~~E~~il~~l~HpnIV~~~~~~~~~~~~yiVmE 103 (350)
T 4b9d_A 24 EKYVRLQKIGEGSFGKAILVKSTEDGRQYVIKEINISRMSSKEREESRREVAVLANMKHPNIVQYRESFEENGSLYIVMD 103 (350)
T ss_dssp CCEEEEEEC------CEEEEEETTTCCEEEEEEEECTTSCHHHHHHHHHHHHHHHHCCCTTBCCEEEEEEETTEEEEEEE
T ss_pred CCEEEEEEEECCCCEEEEEEEECCCCCEEEEEEEEHHHCCHHHHHHHHHHHHHHHHCCCCCCCCEEEEEEECCEEEEEEE
T ss_conf 25588479702779399999988999899999986587897999999999999987799898919999998999999994
Q ss_pred ECCCCCHHHHHHHCCCCCCCCHHHHHHHHHHHHHHHHHHHHCCCCCEEECCCCCCCEEECCCCCEEEEEECCCCCCCCCC
Q ss_conf 52489977886412999999989999999999999999762599888825899985686489812894311410148999
Q 003566 530 YMENGSLEDRLYRKNNTPPIPWFERYRIAWEVASALAFLHNTKPKPIIHRDMKPGNILLDHNLVSKIGDVGLSTMLNSDP 609 (810)
Q Consensus 530 y~~~gsL~~~l~~~~~~~~l~~~~~~~i~~qia~aL~~LH~~~~~~iiHrDLKp~NILl~~~~~~kI~DFGla~~~~~~~ 609 (810)
||+||+|.++|..... ..+++.....|+.||+.||.|||+.+ |+||||||+||||+.++.+||+|||+|+.+....
T Consensus 104 y~~gg~L~~~i~~~~~-~~~~e~~~~~~~~qi~~aL~ylH~~~---IiHRDlKp~NILl~~~g~vKl~DFGla~~~~~~~ 179 (350)
T 4b9d_A 104 YCEGGDLFKRINAQKG-VLFQEDQILDWFVQICLALKHVHDRK---ILHRDIKSQNIFLTKDGTVQLGDFGIARVLNSTV 179 (350)
T ss_dssp CCTTCBHHHHHHHTTT-CCCCHHHHHHHHHHHHHHHHHHHHTT---CEETTCCGGGEEECTTCCEEECSTTEESCCCHHH
T ss_pred CCCCCCHHHHHHHCCC-CCCCHHHHHHHHHHHHHHHHHHHHCC---EEECCCCHHHEEECCCCCEEECCCCCCEEECCCC
T ss_conf 8899839999997389-99978999999999999999999899---1513597899798789998976465214406885
Q ss_pred CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHCCCCCCCCCHHHHHHCHHHHHHHHHHCCCCCCH
Q ss_conf 86444433567756755569522226988973123559999999983799743321024431000368874320799995
Q 003566 610 SFVSTTYKNTGPVGTLCYIDPEYQRTGLISPKSDVYAYGMVILQLLTAKPAIAITHKVETAIDEDNLAEILDAQAGDWPI 689 (810)
Q Consensus 610 ~~~~~~~~~~~~~gt~~Y~aPE~~~~~~~~~~sDi~SlGvil~elltg~~P~~~~~~~~~~~~~~~l~~~ld~~~~~~p~ 689 (810)
...+..+||+.|||||++.+..|+.++|||||||+||+|+||++||......+ .+..++.......+.
T Consensus 180 ------~~~~~~~GT~~YmAPE~l~~~~y~~~~DiwSlGvilyemltG~~PF~~~~~~~------~~~~i~~~~~~~~~~ 247 (350)
T 4b9d_A 180 ------ELARACIGTPYYLSPEICENKPYNNKSDIWALGCVLYELCTLKHAFEAGSMKN------LVLKIISGSFPPVSL 247 (350)
T ss_dssp ------HHHHHHHSCCTTCCHHHHTTCCCCHHHHHHHHHHHHHHHHHSSCSCCCSSHHH------HHHHHHHTCCCCCCT
T ss_pred ------CCCCCCCCCCCCCCHHHHCCCCCCCHHHHHHHHHHHHHHHHCCCCCCCCCHHH------HHHHHHCCCCCCCCC
T ss_conf ------41014578836039999879998959999999999999997879989969999------999998089999975
Q ss_pred HHHHHHHHHHHHHHHHCCCCCCCCCCCHH
Q ss_conf 78999999999964002899997110012
Q 003566 690 KETKELAALGLSCAELRRKDRPDLKNQVL 718 (810)
Q Consensus 690 ~~~~~l~~Li~~Cl~~dp~~RPs~~~~v~ 718 (810)
..+.++.+|+.+||+.||.+||++.+ ++
T Consensus 248 ~~s~~~~~li~~~L~~dP~~R~s~~e-~l 275 (350)
T 4b9d_A 248 HYSYDLRSLVSQLFKRNPRDRPSVNS-IL 275 (350)
T ss_dssp TSCHHHHHHHHHHTCSSGGGSCCHHH-HH
T ss_pred CCCHHHHHHHHHHCCCCHHHCCCHHH-HH
T ss_conf 57999999999985589667908999-96
No 6
>4ase_A Vascular endothelial growth factor receptor 2; transferase, angiogenesis, signaling protein, phosphorylatio receptor, inhibitor; HET: AV9; 1.83A {Homo sapiens} PDB: 4agd_A* 4asd_A* 4agc_A*
Probab=1.00 E-value=1 Score=391.50 Aligned_cols=266 Identities=24% Similarity=0.354 Sum_probs=215.0
Q ss_pred HHHHHHHHCCCCCCEEECCCCCEEEEEEEECC-------EEEEEEEECCCCC-CCHHHHHHHHHHHHHCCC-CCEEEEEC
Q ss_conf 88999862176444022367708999999899-------3899999705684-005989999999970589-95665603
Q 003566 448 WEEIESATLSFSENLRIGMGGYGTVYKGTFHH-------TFAAVKVLQSKGN-IQNKQFLQELEVLSKIRH-PHLLLLLG 518 (810)
Q Consensus 448 ~~ei~~a~~~f~~~~~iG~G~~g~Vyk~~~~~-------~~vAvK~l~~~~~-~~~~~~~~E~~iL~~l~H-pniv~l~g 518 (810)
..+++...++|....+||+|+||.||+|.+.+ ..||||++..... .....|.+|+.+|.+++| ||||+++|
T Consensus 56 ~~~wEi~~~~~~l~~~LG~G~fG~Vy~a~~~~~~~~~~~k~VAvK~l~~~~~~~~~~~~~~E~~il~~l~hhpnIV~l~g 135 (353)
T 4ase_A 56 ASKWEFPRDRLKLGKPLGRGAFGQVIEADAFGIDKTATCRTVAVKMLKEGATHSEHRALMSELKILIHIGHHLNVVNLLG 135 (353)
T ss_dssp HHHHBCCGGGEEEEEEEEECSSEEEEEEEEETSSSTTCEEEEEEEEECTTCCHHHHHHHHHHHHHHHHHCCCTTBCCEEE
T ss_pred CCCCEECHHHEEEEEEEECCCCEEEEEEEECCCCCCCCCEEEEEEEECCCCCHHHHHHHHHHHHHHHHCCCCCCEEEEEE
T ss_conf 85517057995982098217895999999868885447759999997623586899999999999997579984877889
Q ss_pred EECCC---CEEEEEECCCCCHHHHHHHCCC-------------CCCCCHHHHHHHHHHHHHHHHHHHHCCCCCEEECCCC
Q ss_conf 00598---8279995248997788641299-------------9999989999999999999999762599888825899
Q 003566 519 ACPDH---GCLVYEYMENGSLEDRLYRKNN-------------TPPIPWFERYRIAWEVASALAFLHNTKPKPIIHRDMK 582 (810)
Q Consensus 519 ~~~~~---~~lV~Ey~~~gsL~~~l~~~~~-------------~~~l~~~~~~~i~~qia~aL~~LH~~~~~~iiHrDLK 582 (810)
+|.+. .+||||||++|+|.++|..... ...++|..++.|+.||+.||.|||+.+ |||||||
T Consensus 136 ~~~~~~~~~~iV~Ey~~~G~L~~~L~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~qia~gl~yLH~~~---iiHRDLK 212 (353)
T 4ase_A 136 ACTKPGGPLMVIVEFCKFGNLSTYLRSKRNEFVPYKVAPEDLYKDFLTLEHLICYSFQVAKGMEFLASRK---CIHRDLA 212 (353)
T ss_dssp EECCTTSCCEEEEECCTTEEHHHHHHHTGGGBCCC-------CTTCBCHHHHHHHHHHHHHHHHHHHHTT---CCCSCCS
T ss_pred EEEECCCEEEEEEECCCCCCHHHHHHHCCCCCCCCCCCCHHHCCCCCCHHHHHHHHHHHHHHHHHHHHCC---EECCCCC
T ss_conf 9994697799999838989799999743566654333410110356899999999999999987676278---4357467
Q ss_pred CCCEEECCCCCEEEEEECCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHH-CCCCC
Q ss_conf 98568648981289431141014899986444433567756755569522226988973123559999999983-79974
Q 003566 583 PGNILLDHNLVSKIGDVGLSTMLNSDPSFVSTTYKNTGPVGTLCYIDPEYQRTGLISPKSDVYAYGMVILQLLT-AKPAI 661 (810)
Q Consensus 583 p~NILl~~~~~~kI~DFGla~~~~~~~~~~~~~~~~~~~~gt~~Y~aPE~~~~~~~~~~sDi~SlGvil~ellt-g~~P~ 661 (810)
|+|||++.++.+||+|||+|+.+....... ......||+.|||||++.++.|+.++|||||||+||||+| |++||
T Consensus 213 ~~NILl~~~~~vKi~DFGlar~~~~~~~~~----~~~~~~gt~~ymAPE~l~~~~y~~ksDVwS~Gv~l~El~t~G~~Pf 288 (353)
T 4ase_A 213 ARNILLSEKNVVKICDFGLARDIYKDPDYV----RKGDARLPLKWMAPETIFDRVYTIQSDVWSFGVLLWEIFSLGASPY 288 (353)
T ss_dssp GGGEEECGGGCEEECCCGGGSCTTTCTTSE----EETTEEECGGGCCHHHHHHCCCCHHHHHHHHHHHHHHHTTTSCCSS
T ss_pred CCCEEECCCCCEEECCCHHHHHCCCCCCCE----EECCCCCCCCCCCHHHHHCCCCCCCCCEEEHHHHHHHHHHCCCCCC
T ss_conf 211305799978979654322245688720----3254014666569899946999975537406899999981899999
Q ss_pred CCCCHHHHHHCHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHCCCCCCCCCCCHHHHHHHHHH
Q ss_conf 33210244310003688743207999957899999999996400289999711001258987897
Q 003566 662 AITHKVETAIDEDNLAEILDAQAGDWPIKETKELAALGLSCAELRRKDRPDLKNQVLPVLERLKE 726 (810)
Q Consensus 662 ~~~~~~~~~~~~~~l~~~ld~~~~~~p~~~~~~l~~Li~~Cl~~dp~~RPs~~~~v~~~L~~l~~ 726 (810)
......+. ....+........|...+.++.+|+.+||+.+|.+||++. +++..|+.+..
T Consensus 289 ~~~~~~~~-----~~~~i~~g~~~~~p~~~~~~~~~li~~c~~~dP~~RPt~~-eil~~L~~llq 347 (353)
T 4ase_A 289 PGVKIDEE-----FCRRLKEGTRMRAPDYTTPEMYQTMLDCWHGEPSQRPTFS-ELVEHLGNLLQ 347 (353)
T ss_dssp TTCCCSHH-----HHHHHHHTCCCCCCTTCCHHHHHHHHHHTCSSGGGSCCHH-HHHHHHHHHHH
T ss_pred CCCCHHHH-----HHHHHHCCCCCCCCCCCCHHHHHHHHHHCCCCHHHCCCHH-HHHHHHHHHHH
T ss_conf 99898999-----9999973898888865789999999997686966793999-99999999998
No 7
>4fie_A Serine/threonine-protein kinase PAK 4; kinase domain, protein ATP binding, phosphorylation, transferase; HET: SEP ANP; 3.11A {Homo sapiens}
Probab=1.00 E-value=1 Score=390.62 Aligned_cols=241 Identities=20% Similarity=0.315 Sum_probs=203.5
Q ss_pred CCCCCCEEECCCCCEEEEEEEEC--CEEEEEEEECCCCCCCHHHHHHHHHHHHHCCCCCEEEEECEECCCC--EEEEEEC
Q ss_conf 17644402236770899999989--9389999970568400598999999997058995665603005988--2799952
Q 003566 456 LSFSENLRIGMGGYGTVYKGTFH--HTFAAVKVLQSKGNIQNKQFLQELEVLSKIRHPHLLLLLGACPDHG--CLVYEYM 531 (810)
Q Consensus 456 ~~f~~~~~iG~G~~g~Vyk~~~~--~~~vAvK~l~~~~~~~~~~~~~E~~iL~~l~Hpniv~l~g~~~~~~--~lV~Ey~ 531 (810)
..|....+||+|+||.||+|.+. +..||||++........+.+.+|+.+|+.++|||||+++++|.+.. |||||||
T Consensus 151 ~~y~~~~~iG~G~fG~V~~a~~~~tg~~vAiK~i~~~~~~~~~~~~~Ei~il~~l~HpnIV~l~~~~~~~~~~~iVmEy~ 230 (423)
T 4fie_A 151 SYLDNFIKIGEGSTGIVCIATVRSSGKLVAVKKMDLRKQQRRELLFNEVVIMRDYQHENVVEMYNSYLVGDELWVVMEFL 230 (423)
T ss_dssp GTEEEEEEEEECSSCEEEEEEETTTCCEEEEEEEESTTCSSGGGHHHHHHHHHHCCCTTBCCEEEEEEETTEEEEEEECC
T ss_pred HHCEEEEEECCCCCCEEEEEEECCCCCEEEEEEEECCCHHHHHHHHHHHHHHHHCCCCCCCCEEEEEEECCEEEEEEECC
T ss_conf 84386169624818489999999999899999986255468999999999998579989871689999899999999698
Q ss_pred CCCCHHHHHHHCCCCCCCCHHHHHHHHHHHHHHHHHHHHCCCCCEEECCCCCCCEEECCCCCEEEEEECCCCCCCCCCCC
Q ss_conf 48997788641299999998999999999999999976259988882589998568648981289431141014899986
Q 003566 532 ENGSLEDRLYRKNNTPPIPWFERYRIAWEVASALAFLHNTKPKPIIHRDMKPGNILLDHNLVSKIGDVGLSTMLNSDPSF 611 (810)
Q Consensus 532 ~~gsL~~~l~~~~~~~~l~~~~~~~i~~qia~aL~~LH~~~~~~iiHrDLKp~NILl~~~~~~kI~DFGla~~~~~~~~~ 611 (810)
+||+|.+++... .+++..+..|+.||+.||.|||+.+ |+||||||+||||+.++.+||+|||+|+.+.....
T Consensus 231 ~gG~L~~~i~~~----~l~e~~~~~~~~qil~aL~ylH~~~---IiHRDiKp~NILl~~~g~vKl~DFGla~~~~~~~~- 302 (423)
T 4fie_A 231 EGGALTDIVTHT----RMNEEQIAAVCLAVLQALSVLHAQG---VIHRDIKSDSILLTHDGRVKLSDFGFCAQVSKEVP- 302 (423)
T ss_dssp TTEEHHHHHHHS----CCCHHHHHHHHHHHHHHHHHHHHTT---EECCCCSTTTEEECTTCCEEECCCTTCEECCSSCC-
T ss_pred CCCCHHHHHHCC----CCCHHHHHHHHHHHHHHHHHHHHCC---EECCCCCHHHEEECCCCCEEEECCCCCEECCCCCC-
T ss_conf 998289887616----9899999999999999999999889---04465787778985899989803726547778876-
Q ss_pred CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHCCCCCCCCCHHHHHHCHHHHHHHHHHCC--CCCCH
Q ss_conf 4444335677567555695222269889731235599999999837997433210244310003688743207--99995
Q 003566 612 VSTTYKNTGPVGTLCYIDPEYQRTGLISPKSDVYAYGMVILQLLTAKPAIAITHKVETAIDEDNLAEILDAQA--GDWPI 689 (810)
Q Consensus 612 ~~~~~~~~~~~gt~~Y~aPE~~~~~~~~~~sDi~SlGvil~elltg~~P~~~~~~~~~~~~~~~l~~~ld~~~--~~~p~ 689 (810)
.....+||+.|||||++....|+.++|||||||++|+|++|++||......+. +..+..... ...+.
T Consensus 303 -----~~~~~~GTp~YmAPEvl~~~~y~~~~DiWSlGvilyeml~G~~PF~~~~~~~~------~~~i~~~~~~~~~~~~ 371 (423)
T 4fie_A 303 -----RRKSLVGTPYWMAPELISRLPYGPEVDIWSLGIMVIEMVDGEPPYFNEPPLKA------MKMIRDNLPPRLKNLH 371 (423)
T ss_dssp -----CBCCCEECTTTCCHHHHTTCCBCTHHHHHHHHHHHHHHHHSSCTTTTSCHHHH------HHHHHHSCCCCCSCTT
T ss_pred -----CCCCCCCCCCCCCHHHHCCCCCCCHHHHHHHHHHHHHHHHCCCCCCCCCHHHH------HHHHHCCCCCCCCCCC
T ss_conf -----43466647472799997799999689999999999999978799898699999------9999727998876501
Q ss_pred HHHHHHHHHHHHHHHHCCCCCCCCCC
Q ss_conf 78999999999964002899997110
Q 003566 690 KETKELAALGLSCAELRRKDRPDLKN 715 (810)
Q Consensus 690 ~~~~~l~~Li~~Cl~~dp~~RPs~~~ 715 (810)
..+..+.+|+.+||..||.+||++.+
T Consensus 372 ~~s~~~~dli~~~L~~dP~~R~ta~e 397 (423)
T 4fie_A 372 KVSPSLKGFLDRLLVRDPAQRATAAE 397 (423)
T ss_dssp SSCHHHHHHHHHHSCSSTTTSCCHHH
T ss_pred CCCHHHHHHHHHHCCCCHHHCCCHHH
T ss_conf 29999999999986789568909999
No 8
>4fih_A Serine/threonine-protein kinase PAK 4; kinase domain, protein ATP binding, phosphorylation, transferase; HET: SEP; 1.97A {Homo sapiens} PDB: 4fig_A* 4fif_A* 4fii_A* 4fij_A*
Probab=1.00 E-value=1 Score=389.56 Aligned_cols=241 Identities=20% Similarity=0.318 Sum_probs=203.0
Q ss_pred CCCCCCEEECCCCCEEEEEEEEC--CEEEEEEEECCCCCCCHHHHHHHHHHHHHCCCCCEEEEECEECCCC--EEEEEEC
Q ss_conf 17644402236770899999989--9389999970568400598999999997058995665603005988--2799952
Q 003566 456 LSFSENLRIGMGGYGTVYKGTFH--HTFAAVKVLQSKGNIQNKQFLQELEVLSKIRHPHLLLLLGACPDHG--CLVYEYM 531 (810)
Q Consensus 456 ~~f~~~~~iG~G~~g~Vyk~~~~--~~~vAvK~l~~~~~~~~~~~~~E~~iL~~l~Hpniv~l~g~~~~~~--~lV~Ey~ 531 (810)
..|....+||+|+||.||+|.+. +..||||++........+.+.+|+.+|+.++|||||+++++|.+.. |||||||
T Consensus 74 ~~y~~~~~iG~G~fG~V~~a~~~~tg~~vAiK~i~~~~~~~~~~~~~Ei~il~~l~HpnIV~l~~~~~~~~~~~ivmEy~ 153 (346)
T 4fih_A 74 SYLDNFIKIGEGSTGIVCIATVRSSGKLVAVKKMDLRKQQRRELLFNEVVIMRDYQHENVVEMYNSYLVGDELWVVMEFL 153 (346)
T ss_dssp GTEEEEEEEEECSSCEEEEEEETTTCCEEEEEEEEGGGCSSGGGGHHHHHHHHHCCCTTBCCEEEEEEETTEEEEEECCC
T ss_pred HHCEEEEEEECCCCEEEEEEEECCCCCEEEEEEEECCCHHHHHHHHHHHHHHHHCCCCCCCCEEEEEEECCEEEEEEECC
T ss_conf 75387079602728299999998999899999985276568999999999998679989991999999899999999698
Q ss_pred CCCCHHHHHHHCCCCCCCCHHHHHHHHHHHHHHHHHHHHCCCCCEEECCCCCCCEEECCCCCEEEEEECCCCCCCCCCCC
Q ss_conf 48997788641299999998999999999999999976259988882589998568648981289431141014899986
Q 003566 532 ENGSLEDRLYRKNNTPPIPWFERYRIAWEVASALAFLHNTKPKPIIHRDMKPGNILLDHNLVSKIGDVGLSTMLNSDPSF 611 (810)
Q Consensus 532 ~~gsL~~~l~~~~~~~~l~~~~~~~i~~qia~aL~~LH~~~~~~iiHrDLKp~NILl~~~~~~kI~DFGla~~~~~~~~~ 611 (810)
+||+|.+++... .+++..+..|+.||+.||.|||+.+ |+||||||+||||+.++.+||+|||+|+.+.....
T Consensus 154 ~gg~L~~~l~~~----~l~e~~~~~~~~qi~~aL~ylH~~~---IiHRDlKp~NILl~~~g~vKl~DFGla~~~~~~~~- 225 (346)
T 4fih_A 154 EGGALTDIVTHT----RMNEEQIAAVCLAVLQALSVLHAQG---VIHRDIKSDSILLTHDGRVKLSDFGFCAQVSKEVP- 225 (346)
T ss_dssp TTEEHHHHHHHS----CCCHHHHHHHHHHHHHHHHHHHHTT---EECCCCSGGGEEECTTCCEEECCCTTCEECCSSSC-
T ss_pred CCCCHHHHHHCC----CCCHHHHHHHHHHHHHHHHHHHHCC---CCCCCCCHHHEEECCCCCEEEECCCCCEECCCCCC-
T ss_conf 998089998718----9899999999999999999999888---35562788997887999889902757536678877-
Q ss_pred CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHCCCCCCCCCHHHHHHCHHHHHHHHHHCCC--CCCH
Q ss_conf 44443356775675556952222698897312355999999998379974332102443100036887432079--9995
Q 003566 612 VSTTYKNTGPVGTLCYIDPEYQRTGLISPKSDVYAYGMVILQLLTAKPAIAITHKVETAIDEDNLAEILDAQAG--DWPI 689 (810)
Q Consensus 612 ~~~~~~~~~~~gt~~Y~aPE~~~~~~~~~~sDi~SlGvil~elltg~~P~~~~~~~~~~~~~~~l~~~ld~~~~--~~p~ 689 (810)
.....+||+.|||||++....|+.++|||||||++|||+||++||......+. +..+...... ..+.
T Consensus 226 -----~~~~~~GTp~YmAPEvl~~~~y~~~~DiWSlGvilyeml~G~~PF~~~~~~~~------~~~i~~~~~~~~~~~~ 294 (346)
T 4fih_A 226 -----RRKSLVGTPYWMAPELISRLPYGPEVDIWSLGIMVIEMVDGEPPYFNEPPLKA------MKMIRDNLPPRLKNLH 294 (346)
T ss_dssp -----CBCCCCSCGGGCCHHHHTTCCBCTHHHHHHHHHHHHHHHHSSCTTTTSCHHHH------HHHHHHSSCCCCSCGG
T ss_pred -----CCCCCCCCCCCCCHHHHCCCCCCCHHHHHHHHHHHHHHHHCCCCCCCCCHHHH------HHHHHCCCCCCCCCCC
T ss_conf -----53465627582799997799999689999999999999978799898599999------9999717999887502
Q ss_pred HHHHHHHHHHHHHHHHCCCCCCCCCC
Q ss_conf 78999999999964002899997110
Q 003566 690 KETKELAALGLSCAELRRKDRPDLKN 715 (810)
Q Consensus 690 ~~~~~l~~Li~~Cl~~dp~~RPs~~~ 715 (810)
..+.++.+|+.+||..||.+||++.+
T Consensus 295 ~~s~~~~dli~~~L~~dP~~R~ta~e 320 (346)
T 4fih_A 295 KVSPSLKGFLDRLLVRDPAQRATAAE 320 (346)
T ss_dssp GSCHHHHHHHHHHSCSSTTTSCCHHH
T ss_pred CCCHHHHHHHHHHCCCCHHHCCCHHH
T ss_conf 29999999999986799568909999
No 9
>4g3f_A NF-kappa-beta-inducing kinase; non-RD kinase, protein serine/threonine kinase, S based drug design, MAP3K14, transferase; HET: 0WB; 1.64A {Mus musculus} PDB: 4g3g_A* 4g3c_A 4dn5_A*
Probab=1.00 E-value=1 Score=386.53 Aligned_cols=253 Identities=18% Similarity=0.184 Sum_probs=204.8
Q ss_pred HCCCCCCEEECCCCCEEEEEEEEC--CEEEEEEEECCCCCCCHHHHHHHHHHHHHCCCCCEEEEECEECCCC--EEEEEE
Q ss_conf 217644402236770899999989--9389999970568400598999999997058995665603005988--279995
Q 003566 455 TLSFSENLRIGMGGYGTVYKGTFH--HTFAAVKVLQSKGNIQNKQFLQELEVLSKIRHPHLLLLLGACPDHG--CLVYEY 530 (810)
Q Consensus 455 ~~~f~~~~~iG~G~~g~Vyk~~~~--~~~vAvK~l~~~~~~~~~~~~~E~~iL~~l~Hpniv~l~g~~~~~~--~lV~Ey 530 (810)
...|....+||+|+||.||+|.+. +..||||+++.... +.+|+.+|+.++|||||++++++.+.. ||||||
T Consensus 57 ~~~~~~~~~lG~G~fG~Vy~a~~~~~g~~vAiK~i~~~~~-----~~~E~~il~~l~HpnIV~l~~~~~~~~~~~ivmEy 131 (336)
T 4g3f_A 57 VHWMTHQPRVGRGSFGEVHRMKDKQTGFQCAVKKVRLEVF-----RVEELVACAGLSSPRIVPLYGAVREGPWVNIFMEL 131 (336)
T ss_dssp TTEEEEEEEEEEETTEEEEEEEETTTCCEEEEEEEETTTC-----CTHHHHTTTTCCCTTBCCEEEEEEETTEEEEEECC
T ss_pred HHHEEECCEECCCCCEEEEEEEECCCCCEEEEEEECHHHH-----HHHHHHHHHHCCCCCCCCEEEEEEECCEEEEEEEC
T ss_conf 3351768685138780999999889998999999788886-----99999999857998999399999989999999966
Q ss_pred CCCCCHHHHHHHCCCCCCCCHHHHHHHHHHHHHHHHHHHHCCCCCEEECCCCCCCEEECCCC-CEEEEEECCCCCCCCCC
Q ss_conf 24899778864129999999899999999999999997625998888258999856864898-12894311410148999
Q 003566 531 MENGSLEDRLYRKNNTPPIPWFERYRIAWEVASALAFLHNTKPKPIIHRDMKPGNILLDHNL-VSKIGDVGLSTMLNSDP 609 (810)
Q Consensus 531 ~~~gsL~~~l~~~~~~~~l~~~~~~~i~~qia~aL~~LH~~~~~~iiHrDLKp~NILl~~~~-~~kI~DFGla~~~~~~~ 609 (810)
|+||+|.++|...+ .+++..+..|+.|++.||.|||+.+ |+||||||+||||+.++ .+||+|||+|+.+....
T Consensus 132 ~~gg~L~~~l~~~~---~l~e~~~~~~~~qi~~aL~ylH~~~---IiHRDlKp~NILl~~~g~~vKl~DFGla~~~~~~~ 205 (336)
T 4g3f_A 132 LEGGSLGQLIKQMG---CLPEDRALYYLGQALEGLEYLHTRR---ILHGDVKADNVLLSSDGSRAALCDFGHALCLQPDG 205 (336)
T ss_dssp CTTCBHHHHHHHHS---SCCHHHHHHHHHHHHHHHHHHHTTT---EECSCCCGGGEEECTTSCCEEECCCTTCEEC----
T ss_pred CCCCCHHHHHHHCC---CCCHHHHHHHHHHHHHHHHHHHHCC---CEECCCCHHHEEEECCCCEEEEEECCCCEECCCCC
T ss_conf 59986999998769---9999999999999999999999889---04261677887995899979996278776856787
Q ss_pred CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHCCCCCCCCCHHHHHHCHHHHHHHHHHC--CCCC
Q ss_conf 86444433567756755569522226988973123559999999983799743321024431000368874320--7999
Q 003566 610 SFVSTTYKNTGPVGTLCYIDPEYQRTGLISPKSDVYAYGMVILQLLTAKPAIAITHKVETAIDEDNLAEILDAQ--AGDW 687 (810)
Q Consensus 610 ~~~~~~~~~~~~~gt~~Y~aPE~~~~~~~~~~sDi~SlGvil~elltg~~P~~~~~~~~~~~~~~~l~~~ld~~--~~~~ 687 (810)
.. .........+||+.|||||++.+..|+.++|||||||++|+|+||++||....... .+..+.... ....
T Consensus 206 ~~-~~~~~~~~~~GT~~YmAPE~~~~~~y~~~~DiwSlGvilyemltG~~Pf~~~~~~~------~~~~i~~~~~~~~~~ 278 (336)
T 4g3f_A 206 LG-KSLLTGDYIPGTETHMAPEVVMGKPCDAKVDIWSSCCMMLHMLNGCHPWTQYFRGP------LCLKIASEPPPIREI 278 (336)
T ss_dssp ---------CCCCCCGGGCCHHHHTTCCCCTHHHHHHHHHHHHHHHHSSCSSTTTCCSC------CHHHHHHSCCGGGGS
T ss_pred CC-CCEECCCCCCCCCCCCCHHHHCCCCCCCHHHHHHHHHHHHHHHHCCCCCCCCCHHH------HHHHHHCCCCCCHHC
T ss_conf 65-40221785455802008999889998908999999999999997869989989999------999998089980025
Q ss_pred CHHHHHHHHHHHHHHHHHCCCCCCCCCCCHHHHHHHHHH
Q ss_conf 957899999999996400289999711001258987897
Q 003566 688 PIKETKELAALGLSCAELRRKDRPDLKNQVLPVLERLKE 726 (810)
Q Consensus 688 p~~~~~~l~~Li~~Cl~~dp~~RPs~~~~v~~~L~~l~~ 726 (810)
|...+..+.+|+.+||..||.+||++. +++..|.....
T Consensus 279 ~~~~s~~~~~li~~~L~~dP~~R~sa~-el~~~l~~~l~ 316 (336)
T 4g3f_A 279 PPSCAPLTAQAIQEGLRKEPVHRASAM-ELRRKVGKALQ 316 (336)
T ss_dssp CTTSCHHHHHHHHHHTCSSGGGSCCHH-HHHHHHHHHHH
T ss_pred CCCCCHHHHHHHHHHCCCCHHHCCCHH-HHHHHHHHHHH
T ss_conf 866799999999997628976895999-99999999975
No 10
>4aw0_A HPDK1, 3-phosphoinositide-dependent protein kinase 1; transferase, allosteric regulation, allosteric site, phosphorylation, AGC protein kinase; HET: SEP ATP MJF; 1.43A {Homo sapiens} PDB: 3hrc_A* 3hrf_A* 4a06_A* 4a07_A* 3rcj_A* 4aw1_A* 3rwq_A* 3sc1_A* 3qd0_A* 2r7b_A* 3ion_A* 3qcq_A* 3qcs_A* 3qcx_A* 3qcy_A* 3iop_A* 3qd3_A* 3qd4_A* 3h9o_A* 1uu3_A* ...
Probab=1.00 E-value=1 Score=383.85 Aligned_cols=243 Identities=26% Similarity=0.332 Sum_probs=205.8
Q ss_pred CCCCCCEEECCCCCEEEEEEEEC--CEEEEEEEECCCC---CCCHHHHHHHHHHHHHCCCCCEEEEECEECCCC--EEEE
Q ss_conf 17644402236770899999989--9389999970568---400598999999997058995665603005988--2799
Q 003566 456 LSFSENLRIGMGGYGTVYKGTFH--HTFAAVKVLQSKG---NIQNKQFLQELEVLSKIRHPHLLLLLGACPDHG--CLVY 528 (810)
Q Consensus 456 ~~f~~~~~iG~G~~g~Vyk~~~~--~~~vAvK~l~~~~---~~~~~~~~~E~~iL~~l~Hpniv~l~g~~~~~~--~lV~ 528 (810)
.+|.....||+|+||.||+|... +..||+|++.... ......+.+|+.+|++++|||||++++++.+.. ||||
T Consensus 32 ~dy~i~~~lG~G~fg~V~~a~~~~~~~~~AiK~i~k~~~~~~~~~~~~~~E~~il~~l~HpnIv~l~~~~~~~~~~yivm 111 (311)
T 4aw0_A 32 EDFKFGKILGEGSFSTVVLARELATSREYAIKILEKRHIIKENKVPYVTRERDVMSRLDHPFFVKLYFTFQDDEKLYFGL 111 (311)
T ss_dssp GGEEEEEEEEEETTEEEEEEEETTTCCEEEEEEEEHHHHHHTTCHHHHHHHHHHHTTCCCTTBCCEEEEEECSSEEEEEE
T ss_pred CCCEEEEEEECCCCEEEEEEEECCCCCEEEEEEEEHHHCCCHHHHHHHHHHHHHHHHCCCCCCCEEEEEEEECCEEEEEE
T ss_conf 23689889831648499999999999899999988888779789999999999998679989891999997389899999
Q ss_pred EECCCCCHHHHHHHCCCCCCCCHHHHHHHHHHHHHHHHHHHHCCCCCEEECCCCCCCEEECCCCCEEEEEECCCCCCCCC
Q ss_conf 95248997788641299999998999999999999999976259988882589998568648981289431141014899
Q 003566 529 EYMENGSLEDRLYRKNNTPPIPWFERYRIAWEVASALAFLHNTKPKPIIHRDMKPGNILLDHNLVSKIGDVGLSTMLNSD 608 (810)
Q Consensus 529 Ey~~~gsL~~~l~~~~~~~~l~~~~~~~i~~qia~aL~~LH~~~~~~iiHrDLKp~NILl~~~~~~kI~DFGla~~~~~~ 608 (810)
||++||+|.+++.+.+ .+++.....|+.||+.||.|||+.+ |+||||||+|||++.++.+||+|||+|+.+...
T Consensus 112 Ey~~gG~L~~~i~~~~---~l~e~~~~~~~~qi~~al~ylH~~~---IiHRDlKPeNILl~~~g~vKl~DFGla~~~~~~ 185 (311)
T 4aw0_A 112 SYAKNGELLKYIRKIG---SFDETCTRFYTAEIVSALEYLHGKG---IIHRDLKPENILLNEDMHIQITDFGTAKVLSPE 185 (311)
T ss_dssp CCCTTEEHHHHHHHHS---SCCHHHHHHHHHHHHHHHHHHHHTT---EECSCCSGGGEEECTTSCEEECCCTTCEECCTT
T ss_pred ECCCCCCHHHHHHHCC---CCCHHHHHHHHHHHHHHHHHHHHCC---CCCCCCCHHHEEECCCCCEEEEECCCCEECCCC
T ss_conf 6489989999998749---9999999999999999999999887---826878789969858988899876875025778
Q ss_pred CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHCCCCCCCCCHHHHHHCHHHHHHHHHHCCCCCC
Q ss_conf 98644443356775675556952222698897312355999999998379974332102443100036887432079999
Q 003566 609 PSFVSTTYKNTGPVGTLCYIDPEYQRTGLISPKSDVYAYGMVILQLLTAKPAIAITHKVETAIDEDNLAEILDAQAGDWP 688 (810)
Q Consensus 609 ~~~~~~~~~~~~~~gt~~Y~aPE~~~~~~~~~~sDi~SlGvil~elltg~~P~~~~~~~~~~~~~~~l~~~ld~~~~~~p 688 (810)
... ......+||+.|||||++.+..|+.++|||||||++|+|+||++||...+..+ .+..++ .....+|
T Consensus 186 ~~~----~~~~~~~GTp~YmAPEvl~~~~y~~~~DiWSlGvilyeml~G~~PF~~~~~~~------~~~~i~-~~~~~~p 254 (311)
T 4aw0_A 186 SKQ----ARANSFVGTAQYVSPELLTEKSACKSSDLWALGCIIYQLVAGLPPFRAGNEGL------IFAKII-KLEYDFP 254 (311)
T ss_dssp TTC----CCBCCCCSCGGGCCHHHHHHSCBCHHHHHHHHHHHHHHHHHSSCSSCCSSHHH------HHHHHH-HTCCCCC
T ss_pred CCC----CCCCCCCCCCCCCCHHHHCCCCCCCHHHHHHHHHHHHHHHHCCCCCCCCCHHH------HHHHHH-CCCCCCC
T ss_conf 776----54367556803079989768999968989989999999974989989979999------999997-1999999
Q ss_pred HHHHHHHHHHHHHHHHHCCCCCCCCCC
Q ss_conf 578999999999964002899997110
Q 003566 689 IKETKELAALGLSCAELRRKDRPDLKN 715 (810)
Q Consensus 689 ~~~~~~l~~Li~~Cl~~dp~~RPs~~~ 715 (810)
...+.++.+|+.+||..||.+||++.+
T Consensus 255 ~~~s~~~~dli~~lL~~dp~~R~t~~e 281 (311)
T 4aw0_A 255 EKFFPKARDLVEKLLVLDATKRLGCEE 281 (311)
T ss_dssp TTCCHHHHHHHHHHSCSSGGGSTTSGG
T ss_pred CCCCHHHHHHHHHHCCCCHHHCCCHHH
T ss_conf 656999999999976289757809679
Done!