BLASTP 2.2.26 [Sep-21-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.


Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 003567
         (810 letters)

Database: pdbaa 
           62,578 sequences; 14,973,337 total letters

Searching..................................................done



>pdb|3SS3|A Chain A, Crystal Structure Of Mouse Glutaminase C, Ligand-Free Form
 pdb|3SS3|B Chain B, Crystal Structure Of Mouse Glutaminase C, Ligand-Free Form
 pdb|3SS3|C Chain C, Crystal Structure Of Mouse Glutaminase C, Ligand-Free Form
 pdb|3SS3|D Chain D, Crystal Structure Of Mouse Glutaminase C, Ligand-Free Form
 pdb|3SS4|A Chain A, Crystal Structure Of Mouse Glutaminase C, Phosphate-Bound
           Form
 pdb|3SS4|B Chain B, Crystal Structure Of Mouse Glutaminase C, Phosphate-Bound
           Form
 pdb|3SS4|C Chain C, Crystal Structure Of Mouse Glutaminase C, Phosphate-Bound
           Form
 pdb|3SS4|D Chain D, Crystal Structure Of Mouse Glutaminase C, Phosphate-Bound
           Form
 pdb|3SS5|A Chain A, Crystal Structure Of Mouse Glutaminase C,
           L-Glutamate-Bound Form
 pdb|3SS5|B Chain B, Crystal Structure Of Mouse Glutaminase C,
           L-Glutamate-Bound Form
 pdb|3SS5|C Chain C, Crystal Structure Of Mouse Glutaminase C,
           L-Glutamate-Bound Form
 pdb|3SS5|D Chain D, Crystal Structure Of Mouse Glutaminase C,
           L-Glutamate-Bound Form
          Length = 479

 Score = 31.2 bits (69), Expect = 2.3,   Method: Compositional matrix adjust.
 Identities = 40/164 (24%), Positives = 65/164 (39%), Gaps = 15/164 (9%)

Query: 351 NEAKHDHLPSPEPETSVTPDYLANASAACPVESVENVQLPSPATVSDPQFPEQNDGIMIC 410
           N+ K   LPS E     T   +A      PV         +    SDP+  E  D + + 
Sbjct: 10  NKIKQGLLPSLEDLLFYT---IAEGQEKIPVHKFITALKSTGLRTSDPRLKECMDMLRL- 65

Query: 411 TLNTEDPEIPCNDDAF---LPNNLLPSSVSIAKR------QNFKDAGNPFSSSVKDFSGN 461
           TL T    +  + D F   + +N++  + +  ++       +F    +    S K  SG 
Sbjct: 66  TLQTTSDGVMLDKDLFKKCVQSNIVLLTQAFRRKFVIPDFMSFTSHIDELYESAKKQSGG 125

Query: 462 QKVSDQV-LMQGGSTQMVGSQVIPGSHKHHPVGDSGVKFELHSC 504
            KV+D +  +   S  + G  V     + H +GD+ V F L SC
Sbjct: 126 -KVADYIPQLAKFSPDLWGVSVCTVDGQRHSIGDTKVPFCLQSC 168


>pdb|3UNW|A Chain A, Crystal Structure Of Human Gac In Complex With Glutamate
 pdb|3UNW|B Chain B, Crystal Structure Of Human Gac In Complex With Glutamate
 pdb|3UNW|C Chain C, Crystal Structure Of Human Gac In Complex With Glutamate
 pdb|3UNW|D Chain D, Crystal Structure Of Human Gac In Complex With Glutamate
 pdb|3UO9|A Chain A, Crystal Structure Of Human Gac In Complex With Glutamate
           And Bptes
 pdb|3UO9|B Chain B, Crystal Structure Of Human Gac In Complex With Glutamate
           And Bptes
 pdb|3UO9|C Chain C, Crystal Structure Of Human Gac In Complex With Glutamate
           And Bptes
 pdb|3UO9|D Chain D, Crystal Structure Of Human Gac In Complex With Glutamate
           And Bptes
          Length = 534

 Score = 31.2 bits (69), Expect = 2.4,   Method: Compositional matrix adjust.
 Identities = 42/174 (24%), Positives = 69/174 (39%), Gaps = 15/174 (8%)

Query: 341 DGLSLLLNSPNEAKHDHLPSPEPETSVTPDYLANASAACPVESVENVQLPSPATVSDPQF 400
           +G  L+ +  N+ K   LPS E     T   +A      PV         +    SDP+ 
Sbjct: 49  EGKELVASGENKIKQGLLPSLEDLLFYT---IAEGQEKIPVHKFITALKSTGLRTSDPRL 105

Query: 401 PEQNDGIMICTLNTEDPEIPCNDDAF---LPNNLLPSSVSIAKR------QNFKDAGNPF 451
            E  D + + TL T    +  + D F   + +N++  + +  ++       +F    +  
Sbjct: 106 KECMDMLRL-TLQTTSDGVMLDKDLFKKCVQSNIVLLTQAFRRKFVIPDFMSFTSHIDEL 164

Query: 452 SSSVKDFSGNQKVSDQV-LMQGGSTQMVGSQVIPGSHKHHPVGDSGVKFELHSC 504
             S K  SG  KV+D +  +   S  + G  V     + H  GD+ V F L SC
Sbjct: 165 YESAKKQSGG-KVADYIPQLAKFSPDLWGVSVCTVDGQRHSTGDTKVPFCLQSC 217


  Database: pdbaa
    Posted date:  Mar 3, 2013 10:34 PM
  Number of letters in database: 14,973,337
  Number of sequences in database:  62,578
  
Lambda     K      H
   0.314    0.132    0.388 

Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 25,777,563
Number of Sequences: 62578
Number of extensions: 1157823
Number of successful extensions: 1631
Number of sequences better than 100.0: 4
Number of HSP's better than 100.0 without gapping: 0
Number of HSP's successfully gapped in prelim test: 4
Number of HSP's that attempted gapping in prelim test: 1631
Number of HSP's gapped (non-prelim): 4
length of query: 810
length of database: 14,973,337
effective HSP length: 107
effective length of query: 703
effective length of database: 8,277,491
effective search space: 5819076173
effective search space used: 5819076173
T: 11
A: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.9 bits)
S2: 56 (26.2 bits)