Query 003567
Match_columns 810
No_of_seqs 149 out of 222
Neff 3.6
Searched_HMMs 46136
Date Fri Mar 29 01:52:58 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/003567.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/003567hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG2293 Daxx-interacting prote 100.0 4E-53 8.6E-58 463.5 17.4 174 627-802 373-546 (547)
2 cd00060 FHA Forkhead associate 99.2 5.1E-11 1.1E-15 102.9 10.7 92 689-786 4-101 (102)
3 PF00498 FHA: FHA domain; Int 99.2 2.1E-11 4.5E-16 100.9 6.2 67 706-779 1-68 (68)
4 PF13325 MCRS_N: N-terminal re 99.1 2.4E-11 5.1E-16 123.2 3.3 72 605-678 122-194 (199)
5 COG5025 Transcription factor o 98.9 7.1E-10 1.5E-14 127.5 2.2 102 685-789 70-190 (610)
6 TIGR03354 VI_FHA type VI secre 98.6 1E-07 2.2E-12 105.4 9.0 89 694-788 14-104 (396)
7 smart00240 FHA Forkhead associ 98.3 1.4E-06 3.1E-11 68.3 5.4 51 706-762 1-52 (52)
8 COG1716 FOG: FHA domain [Signa 98.0 2.2E-05 4.7E-10 76.3 9.5 93 688-790 73-167 (191)
9 PLN02927 antheraxanthin epoxid 97.8 3.6E-05 7.7E-10 90.6 8.2 76 702-780 555-636 (668)
10 COG3456 Predicted component of 97.5 0.00017 3.6E-09 80.7 7.3 86 697-789 19-106 (430)
11 TIGR01663 PNK-3'Pase polynucle 95.2 0.032 7E-07 64.8 6.1 80 694-782 22-102 (526)
12 KOG0245 Kinesin-like protein [ 93.2 0.68 1.5E-05 57.5 11.8 95 688-789 453-556 (1221)
13 KOG1881 Anion exchanger adapto 92.9 0.11 2.3E-06 62.1 4.4 79 702-787 175-264 (793)
14 KOG1882 Transcriptional regula 88.8 0.65 1.4E-05 49.9 5.1 53 727-779 211-276 (293)
15 TIGR02500 type_III_yscD type I 86.8 2.1 4.6E-05 48.2 8.0 89 689-786 3-94 (410)
16 KOG2294 Transcription factor o 75.7 4.2 9.1E-05 45.3 5.2 92 696-787 59-162 (454)
17 KOG2293 Daxx-interacting prote 65.8 3.8 8.1E-05 48.2 2.2 109 605-723 330-454 (547)
18 KOG0241 Kinesin-like protein [ 58.5 44 0.00096 42.4 9.2 82 697-789 461-542 (1714)
19 PF03166 MH2: MH2 domain; Int 53.6 49 0.0011 33.7 7.4 66 698-763 21-96 (181)
20 PF07273 DUF1439: Protein of u 47.6 15 0.00033 36.2 2.7 76 672-751 3-91 (152)
21 PRK10598 lipoprotein; Provisio 45.3 29 0.00063 36.2 4.4 55 696-751 53-117 (186)
22 PRK11507 ribosome-associated p 44.0 37 0.0008 30.5 4.2 33 753-786 37-69 (70)
23 KOG0615 Serine/threonine prote 43.6 25 0.00053 41.0 3.9 78 703-780 63-147 (475)
24 KOG1880 Nuclear inhibitor of p 42.4 29 0.00063 38.8 4.1 69 706-780 40-110 (337)
25 PRK15367 type III secretion sy 35.2 45 0.00098 38.4 4.3 74 704-791 24-97 (395)
26 COG3354 FlaG Putative archaeal 30.3 66 0.0014 32.8 4.0 35 744-778 73-126 (154)
27 COG2501 S4-like RNA binding pr 28.9 82 0.0018 28.7 4.0 33 754-787 38-70 (73)
28 PF06905 FAIM1: Fas apoptotic 28.8 9.6 0.00021 39.3 -2.0 58 750-807 28-102 (177)
29 PF09781 NDUF_B5: NADH:ubiquin 25.0 57 0.0012 34.2 2.7 35 646-680 125-159 (187)
30 PF07610 DUF1573: Protein of u 24.1 1.4E+02 0.0029 24.0 4.1 25 744-768 1-25 (45)
31 TIGR02988 YaaA_near_RecF S4 do 23.6 91 0.002 25.9 3.1 24 754-778 35-58 (59)
32 KOG4352 Fas-mediated apoptosis 22.4 47 0.001 34.1 1.4 58 750-807 27-99 (187)
33 cd00050 MH2 MH2 domain; C term 21.8 1.3E+02 0.0029 31.2 4.5 43 735-778 69-117 (176)
34 smart00524 DWB Domain B in dwa 21.3 1.3E+02 0.0029 31.0 4.5 41 736-777 65-111 (171)
35 smart00797 AHS2 Allophanate hy 20.7 1.3E+02 0.0027 33.2 4.4 42 745-786 46-92 (280)
No 1
>KOG2293 consensus Daxx-interacting protein MSP58/p78, contains FHA domain [Transcription; Signal transduction mechanisms]
Probab=100.00 E-value=4e-53 Score=463.48 Aligned_cols=174 Identities=59% Similarity=0.869 Sum_probs=167.5
Q ss_pred CCCCCcccHHHHHhcCCCCCCCchhhhhhhhccccHHHHHHHHHHHhhhhhHhHHhhcCCcceEEEEecceeEeeccCeE
Q 003567 627 DDVPYFSDIEAMILDMDLDPDDQGIYEQEVSKYQHEDTRRAIIRLEQGAHSYMQRAILSHGAFAILYGRHSKHYIKKPEV 706 (810)
Q Consensus 627 d~vpsFSDaE~mIld~dL~p~dq~~~~~Evsr~q~~~~kr~I~rLEqe~~s~~~r~i~~~~AlAvL~Gr~~~YyIrs~eV 706 (810)
++++ ||+|+||+|++|.|.||+....|.+.++.+..+|.|+||||.+++||||+|+.+||||||+|+.++||||++||
T Consensus 373 E~Le--~diEami~D~dl~p~~qd~r~le~e~~r~~~l~~~iirleqs~~~~mqrai~~hgAiAvL~Gr~skh~mrk~EV 450 (547)
T KOG2293|consen 373 EELE--SDIEAMILDMDLEPDDQDIRSLEAEKSRSQVLVRSIIRLEQSAESYMQRAIAFHGAIAVLYGRFSKHYMRKKEV 450 (547)
T ss_pred cccc--chHHHHHhhcccCCcchHHHHHHHHHhhhHHHHHHhhhhhhcccchhhhhhhhcceeEEEechhhHhhhcCcce
Confidence 5566 99999999999999999987666666788889999999999999999999999999999999999999999999
Q ss_pred EECCCCCCCCcceecCCCCCCccchhhceeeeecCCCcEEEEecccCCeEECcEEcCCCCccccCCCCeEEEcCeEEEEE
Q 003567 707 LLGRATEDVVVDIDLGREGRTNKISRRQAMINMDEAGSFHLKNLGKCPILVNNKEVPPRQSQGLGSSCLIEIRGLAFIFE 786 (810)
Q Consensus 707 tIGRsT~~~~VDIDLs~EGpaskISRrHA~Ikl~~dg~F~L~NlGKngI~VNGk~i~~G~~~~L~sgsLIEIggl~fiFl 786 (810)
+|||+|.+..|||||++|||++|||||||+|||..+|+|+|+|+||++|+|||++|.+|++++|+++|||||.|++|+|+
T Consensus 451 tlGRat~d~~VDIDLgkegpatKISRRQa~IkL~n~GsF~IkNlGK~~I~vng~~l~~gq~~~L~~nclveIrg~~FiF~ 530 (547)
T KOG2293|consen 451 TLGRATGDLKVDIDLGKEGPATKISRRQALIKLKNDGSFFIKNLGKRSILVNGGELDRGQKVILKNNCLVEIRGLRFIFE 530 (547)
T ss_pred EeeccCCCcceeeeccccCccceeeccceeEEeccCCcEEeccCcceeEEeCCccccCCceEEeccCcEEEEccceEEEe
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred eChHhHHHHHhhhhcc
Q 003567 787 TNQTCVKRYLDSIMKE 802 (810)
Q Consensus 787 lN~~lV~~~l~~~~kk 802 (810)
+|+++|.+||+++.|.
T Consensus 531 ~N~~~v~~~l~~~~K~ 546 (547)
T KOG2293|consen 531 INQEAVGQYLKENAKR 546 (547)
T ss_pred ecHHHHHHHHHhcccc
Confidence 9999999999999875
No 2
>cd00060 FHA Forkhead associated domain (FHA); found in eukaryotic and prokaryotic proteins. Putative nuclear signalling domain. FHA domains may bind phosphothreonine, phosphoserine and sometimes phosphotyrosine. In eukaryotes, many FHA domain-containing proteins localize to the nucleus, where they participate in establishing or maintaining cell cycle checkpoints, DNA repair, or transcriptional regulation. Members of the FHA family include: Dun1, Rad53, Cds1, Mek1, KAPP(kinase-associated protein phosphatase),and Ki-67 (a human nuclear protein related to cell proliferation).
Probab=99.25 E-value=5.1e-11 Score=102.91 Aligned_cols=92 Identities=26% Similarity=0.445 Sum_probs=80.1
Q ss_pred eEEEEe--cceeEeecc-CeEEECCCCCCCCcceecCCCCCCccchhhceeeeecC-CCcEEEEecccCCeEECcEEcCC
Q 003567 689 FAILYG--RHSKHYIKK-PEVLLGRATEDVVVDIDLGREGRTNKISRRQAMINMDE-AGSFHLKNLGKCPILVNNKEVPP 764 (810)
Q Consensus 689 lAvL~G--r~~~YyIrs-~eVtIGRsT~~~~VDIDLs~EGpaskISRrHA~Ikl~~-dg~F~L~NlGKngI~VNGk~i~~ 764 (810)
|.++.| ...+|.++. .+++|||+... +||-|. ...|||+||+|+++. .+.|++.+.++++++|||+++..
T Consensus 4 L~~~~~~~~~~~~~l~~~~~~~iGr~~~~--~~i~l~----~~~iS~~H~~i~~~~~~~~~~~~~~s~~g~~vn~~~~~~ 77 (102)
T cd00060 4 LVVLSGDASGRRYYLDPGGTYTIGRDSDN--CDIVLD----DPSVSRRHAVIRYDGDGGVVLIDLGSTNGTFVNGQRVSP 77 (102)
T ss_pred EEEecCCCceeEEEECCCCeEEECcCCCc--CCEEcC----CCCeeCcceEEEEcCCCCEEEEECCCCCCeEECCEECCC
Confidence 455666 688999999 99999998887 777773 799999999999998 67788888889999999999999
Q ss_pred CCccccCCCCeEEEc--CeEEEEE
Q 003567 765 RQSQGLGSSCLIEIR--GLAFIFE 786 (810)
Q Consensus 765 G~~~~L~sgsLIEIg--gl~fiFl 786 (810)
+.++.|.+|++|.|+ ...|+|.
T Consensus 78 ~~~~~l~~gd~i~ig~~~~~~~~~ 101 (102)
T cd00060 78 GEPVRLRDGDVIRLGNTSISFRFE 101 (102)
T ss_pred CCcEECCCCCEEEECCeEEEEEEe
Confidence 999999999999999 6666653
No 3
>PF00498 FHA: FHA domain; InterPro: IPR000253 The forkhead-associated (FHA) domain [] is a phosphopeptide recognition domain found in many regulatory proteins. It displays specificity for phosphothreonine-containing epitopes but will also recognise phosphotyrosine with relatively high affinity. It spans approximately 80-100 amino acid residues folded into an 11-stranded beta sandwich, which sometimes contain small helical insertions between the loops connecting the strands []. To date, genes encoding FHA-containing proteins have been identified in eubacterial and eukaryotic but not archaeal genomes. The domain is present in a diverse range of proteins, such as kinases, phosphatases, kinesins, transcription factors, RNA-binding proteins and metabolic enzymes which partake in many different cellular processes - DNA repair, signal transduction, vesicular transport and protein degradation are just a few examples.; GO: 0005515 protein binding; PDB: 1LGQ_B 1LGP_A 2CSW_A 2PIE_A 3FM8_A 3MDB_B 3GQS_B 1UHT_A 1WLN_A 3POA_A ....
Probab=99.21 E-value=2.1e-11 Score=100.87 Aligned_cols=67 Identities=33% Similarity=0.502 Sum_probs=58.5
Q ss_pred EEECCCCCCCCcceecCCCCCCccchhhceeeeecCCCcEEEEecc-cCCeEECcEEcCCCCccccCCCCeEEEc
Q 003567 706 VLLGRATEDVVVDIDLGREGRTNKISRRQAMINMDEAGSFHLKNLG-KCPILVNNKEVPPRQSQGLGSSCLIEIR 779 (810)
Q Consensus 706 VtIGRsT~~~~VDIDLs~EGpaskISRrHA~Ikl~~dg~F~L~NlG-KngI~VNGk~i~~G~~~~L~sgsLIEIg 779 (810)
|+|||+ ...||-|. ...|||+||.|.++.++.|+|+++| +|++||||+++.++.++.|.+|++|.||
T Consensus 1 ~~iGR~---~~~di~l~----~~~iSr~Ha~i~~~~~~~~~i~d~~s~ngt~vng~~l~~~~~~~L~~gd~i~~G 68 (68)
T PF00498_consen 1 VTIGRS---PDCDIVLP----DPSISRRHARISFDDDGQFYIEDLGSTNGTFVNGQRLGPGEPVPLKDGDIIRFG 68 (68)
T ss_dssp EEEESS---TTSSEEET----STTSSTTSEEEEEETTEEEEEEESSSSS-EEETTEEESSTSEEEE-TTEEEEET
T ss_pred CEEcCC---CCCCEEEC----CHheeeeeeEEEEeceeeEEEEeCCCCCcEEECCEEcCCCCEEECCCCCEEEcC
Confidence 689999 45677773 5779999999999988899999997 8999999999999999999999999987
No 4
>PF13325 MCRS_N: N-terminal region of micro-spherule protein
Probab=99.13 E-value=2.4e-11 Score=123.24 Aligned_cols=72 Identities=25% Similarity=0.310 Sum_probs=65.4
Q ss_pred CCCCccCCCCCCCCCCCCCCCCCCCCCcccHHHHHhcCCCC-CCCchhhhhhhhccccHHHHHHHHHHHhhhhhH
Q 003567 605 DAEPIMNPSTTEPEDPSVESDDDDVPYFSDIEAMILDMDLD-PDDQGIYEQEVSKYQHEDTRRAIIRLEQGAHSY 678 (810)
Q Consensus 605 ~~~~~~y~ll~dQ~~~~~~s~~d~vpsFSDaE~mIld~dL~-p~dq~~~~~Evsr~q~~~~kr~I~rLEqe~~s~ 678 (810)
++.+++|+||+||.+++++..++.+++|||+|++|+|.+|. |.|+ .+++|+ .+++|++||+||+||+|+.+|
T Consensus 122 W~lmkqy~LL~DQ~v~~~~~~~~~~~sfsDaEd~i~d~~l~~~~de-~l~~el-~~~dr~~k~~ir~lE~el~~w 194 (199)
T PF13325_consen 122 WRLMKQYHLLPDQSVQPLPKQDDQVLSFSDAEDLIDDSELKDPRDE-ALEHEL-ELADRRQKREIRQLENELSRW 194 (199)
T ss_pred HHHHHHhchhhccccCCCCCCCccccccccHHHHhhccccccCccc-ccchhh-hHHhHHHHHHHHHHHHHhhhh
Confidence 36899999999999999998856899999999999999995 7775 468999 589999999999999999999
No 5
>COG5025 Transcription factor of the Forkhead/HNF3 family [Transcription]
Probab=98.86 E-value=7.1e-10 Score=127.50 Aligned_cols=102 Identities=19% Similarity=0.115 Sum_probs=93.2
Q ss_pred CCcceEEEEecceeEeeccCeEEECCCCCC---------------CCcceecCCCCCCccchhhceeeeecCC-CcEEEE
Q 003567 685 SHGAFAILYGRHSKHYIKKPEVLLGRATED---------------VVVDIDLGREGRTNKISRRQAMINMDEA-GSFHLK 748 (810)
Q Consensus 685 ~~~AlAvL~Gr~~~YyIrs~eVtIGRsT~~---------------~~VDIDLs~EGpaskISRrHA~Ikl~~d-g~F~L~ 748 (810)
..+|||+|.|-.|+||+...+|.+||..+- +.+++++ |++++++|+|+.|+++.. +.|+|+
T Consensus 70 ~~qayak~~g~~~t~~v~~~s~a~gr~~~il~s~~~~lt~s~~~~~~~~~~~---~~~k~~~~~~~sIr~Nls~~~a~~~ 146 (610)
T COG5025 70 EIQAYAKLAGSNWTYYVPPYSYATGRGLAILNSPDKPLTLSKIYTWIHNTFF---YYAKVVSRWQNSIRHNLSLNDAFIK 146 (610)
T ss_pred HhhhHHHhcCCCcccccCCeeeeeccccccccCcccCCcccceeeeeeeccc---ccccccchhhhhhhcccccCceEEE
Confidence 457899999999999999999999996542 4577888 999999999999999974 899999
Q ss_pred ecccCCeEECcEEcCCCC---ccccCCCCeEEEcCeEEEEEeCh
Q 003567 749 NLGKCPILVNNKEVPPRQ---SQGLGSSCLIEIRGLAFIFETNQ 789 (810)
Q Consensus 749 NlGKngI~VNGk~i~~G~---~~~L~sgsLIEIggl~fiFllN~ 789 (810)
.+||+++.|+|+++.-|. ...|..|+++++++.+++|.++.
T Consensus 147 i~g~~g~~~~g~~~~igP~~~~~~l~~g~~~~~~~~~~~~~~p~ 190 (610)
T COG5025 147 IEGRNGAKVKGHFWSIGPGHETQFLKSGLRLDGGGKQMMFTLPS 190 (610)
T ss_pred EeccCCccccceeeccCCCccceeeccccccccccccccccCcc
Confidence 999999999999999887 89999999999999999999874
No 6
>TIGR03354 VI_FHA type VI secretion system FHA domain protein. Members of this protein family are FHA (forkhead-associated) domain-containing proteins that are part of type VI secretion loci in a considerable number of bacteria, most of which are known pathogens. Species include Pseudomonas aeruginosa PAO1, Aeromonas hydrophila, Yersinia pestis, Burkholderia mallei, etc.
Probab=98.61 E-value=1e-07 Score=105.42 Aligned_cols=89 Identities=16% Similarity=0.232 Sum_probs=77.4
Q ss_pred ecceeEeeccCeEEECCCCCCCCcceecCCCCCCccchhhceeeeecCCCcEEEEecccCCeEEC--cEEcCCCCccccC
Q 003567 694 GRHSKHYIKKPEVLLGRATEDVVVDIDLGREGRTNKISRRQAMINMDEAGSFHLKNLGKCPILVN--NKEVPPRQSQGLG 771 (810)
Q Consensus 694 Gr~~~YyIrs~eVtIGRsT~~~~VDIDLs~EGpaskISRrHA~Ikl~~dg~F~L~NlGKngI~VN--Gk~i~~G~~~~L~ 771 (810)
|....|.+.+..++|||... .|+=| ..+...|||+||+|.++ +|.|+|+.+++||+||| |.++..|..++|.
T Consensus 14 g~~~~~~f~~~~~~IGR~~~---~d~~l--~d~~~~VS~~Ha~I~~~-~g~~~l~DlStNGT~VN~sg~~l~~~~~~~L~ 87 (396)
T TIGR03354 14 GIAAQKTFGTNGGTIGRSED---CDWVL--PDPERHVSGRHARIRYR-DGAYLLTDLSTNGVFLNGSGSPLGRGNPVRLE 87 (396)
T ss_pred CcceEEEECCCCEEEecCCC---CCEEe--CCCCCCcchhhcEEEEE-CCEEEEEECCCCCeEECCCCCCCCCCCceEcC
Confidence 55678888899999999864 34444 34566799999999998 68899999988999999 9999999999999
Q ss_pred CCCeEEEcCeEEEEEeC
Q 003567 772 SSCLIEIRGLAFIFETN 788 (810)
Q Consensus 772 sgsLIEIggl~fiFllN 788 (810)
+|++|.||...+.|.+.
T Consensus 88 ~GD~I~iG~~~lrv~~~ 104 (396)
T TIGR03354 88 QGDRLRLGDYEIRVSLG 104 (396)
T ss_pred CCCEEEECCEEEEEEeC
Confidence 99999999999999995
No 7
>smart00240 FHA Forkhead associated domain. Found in eukaryotic and prokaryotic proteins. Putative nuclear signalling domain.
Probab=98.27 E-value=1.4e-06 Score=68.29 Aligned_cols=51 Identities=45% Similarity=0.646 Sum_probs=42.1
Q ss_pred EEECCCCCCCCcceecCCCCCCccchhhceeeeecCCCcEEEEecc-cCCeEECcEEc
Q 003567 706 VLLGRATEDVVVDIDLGREGRTNKISRRQAMINMDEAGSFHLKNLG-KCPILVNNKEV 762 (810)
Q Consensus 706 VtIGRsT~~~~VDIDLs~EGpaskISRrHA~Ikl~~dg~F~L~NlG-KngI~VNGk~i 762 (810)
++|||..+ ..||-|. ++ .|||+||.|+++.++.|+|++.+ ++++||||+++
T Consensus 1 ~~iGr~~~--~~~i~~~--~~--~vs~~H~~i~~~~~~~~~i~d~~s~~gt~vng~~v 52 (52)
T smart00240 1 VTIGRSSE--DCDIQLP--GP--SISRRHAEIVYDGGGRFYLIDLGSTNGTFVNGKRI 52 (52)
T ss_pred CEeCCCCC--CCCEEeC--CC--CcchhHcEEEECCCCeEEEEECCCCCCeeECCEEC
Confidence 47999876 3455552 33 49999999999998899999999 89999999975
No 8
>COG1716 FOG: FHA domain [Signal transduction mechanisms]
Probab=98.04 E-value=2.2e-05 Score=76.30 Aligned_cols=93 Identities=25% Similarity=0.253 Sum_probs=70.4
Q ss_pred ceEEEEecceeEeeccCeEEECCCCCCCCcceecCCCCCCccchhhceeeeecCCCcEEEEecc-cCCeEECcEEcCCCC
Q 003567 688 AFAILYGRHSKHYIKKPEVLLGRATEDVVVDIDLGREGRTNKISRRQAMINMDEAGSFHLKNLG-KCPILVNNKEVPPRQ 766 (810)
Q Consensus 688 AlAvL~Gr~~~YyIrs~eVtIGRsT~~~~VDIDLs~EGpaskISRrHA~Ikl~~dg~F~L~NlG-KngI~VNGk~i~~G~ 766 (810)
...+......++......++|||. ...||=| +...|||+||.|+++.+. |+++.+| .||.||||.++..
T Consensus 73 ~~~~~~~~~~~~~~~~~~~tigr~---~~~~i~~----~~~~vSR~Ha~l~~~~~~-~~~~d~~S~nGt~vn~~~v~~-- 142 (191)
T COG1716 73 AVTIGLDEGSVIVLGEPVTTIGRD---PDNDIVL----DDDVVSRRHAELRREGNE-VFLEDLGSTNGTYVNGEKVRQ-- 142 (191)
T ss_pred eEEEecccCcccccccceEEeccC---CCCCEEc----CCCccccceEEEEEeCCc-eEEEECCCCcceEECCeEccC--
Confidence 333344445567777779999992 2333333 568999999999999665 5557777 5999999999987
Q ss_pred ccccCCCCeEEEcCeEE-EEEeChH
Q 003567 767 SQGLGSSCLIEIRGLAF-IFETNQT 790 (810)
Q Consensus 767 ~~~L~sgsLIEIggl~f-iFllN~~ 790 (810)
.+.|.+|++|.|+.... .+.+...
T Consensus 143 ~~~l~~gd~i~i~~~~~~~~~~~~~ 167 (191)
T COG1716 143 RVLLQDGDVIRLGGTLAERLRIILT 167 (191)
T ss_pred cEEcCCCCEEEECccceeeEeeccc
Confidence 89999999999999988 6655443
No 9
>PLN02927 antheraxanthin epoxidase/zeaxanthin epoxidase
Probab=97.84 E-value=3.6e-05 Score=90.59 Aligned_cols=76 Identities=18% Similarity=0.296 Sum_probs=63.2
Q ss_pred ccCeEEECCCCCCCCcceecCCCCCCccchhhceeeeecCCCcEEEEeccc-CCeEECcEE-----cCCCCccccCCCCe
Q 003567 702 KKPEVLLGRATEDVVVDIDLGREGRTNKISRRQAMINMDEAGSFHLKNLGK-CPILVNNKE-----VPPRQSQGLGSSCL 775 (810)
Q Consensus 702 rs~eVtIGRsT~~~~VDIDLs~EGpaskISRrHA~Ikl~~dg~F~L~NlGK-ngI~VNGk~-----i~~G~~~~L~sgsL 775 (810)
.+.-.+|||.+.....+.-+- =+...||+.||.|.++ ++.|||+.++. ||.||||.. +.++.+++|++|++
T Consensus 555 ~~~p~~iG~~~~~~~~~~~i~--i~~~~vS~~Ha~i~~~-~~~~~~~Dl~S~nGT~v~~~~~~r~~~~p~~~~~l~~~d~ 631 (668)
T PLN02927 555 EDQPCIVGSEPDQDFPGMRIV--IPSSQVSKMHARVIYK-DGAFFLMDLRSEHGTYVTDNEGRRYRATPNFPARFRSSDI 631 (668)
T ss_pred CCCCeEecCCCCcCCCCceEE--ecCCccChhHeEEEEE-CCEEEEEECCCCCccEEeCCCCceEecCCCCceEeCCCCE
Confidence 667789999876543222221 2568999999999999 88999999997 999998887 67899999999999
Q ss_pred EEEcC
Q 003567 776 IEIRG 780 (810)
Q Consensus 776 IEIgg 780 (810)
|+||.
T Consensus 632 I~~g~ 636 (668)
T PLN02927 632 IEFGS 636 (668)
T ss_pred EEeCC
Confidence 99998
No 10
>COG3456 Predicted component of the type VI protein secretion system, contains a FHA domain [Intracellular trafficking, secretion, and vesicular transport; Signal transduction mechanisms]
Probab=97.54 E-value=0.00017 Score=80.70 Aligned_cols=86 Identities=19% Similarity=0.313 Sum_probs=72.2
Q ss_pred eeEeeccCeEEECCCCC-CCCcceecCCCCCCccchhhceeeeecCCCcEEEEecccCCeEECcEEcCCCCc-cccCCCC
Q 003567 697 SKHYIKKPEVLLGRATE-DVVVDIDLGREGRTNKISRRQAMINMDEAGSFHLKNLGKCPILVNNKEVPPRQS-QGLGSSC 774 (810)
Q Consensus 697 ~~YyIrs~eVtIGRsT~-~~~VDIDLs~EGpaskISRrHA~Ikl~~dg~F~L~NlGKngI~VNGk~i~~G~~-~~L~sgs 774 (810)
..+......-+|||+.+ +|.|| -+-..||++||+|.++ +|.|+|+....++.+|||-.++.|.. .+|.+|+
T Consensus 19 aq~~f~~~~g~IGrs~dcdW~i~------D~~~~VS~~Hc~I~~~-dg~f~L~DtS~g~l~VNgs~~~~g~~~~RLqqGd 91 (430)
T COG3456 19 AQKLFDRGGGVIGRSPDCDWQID------DPERFVSKQHCTISYR-DGGFCLTDTSNGGLLVNGSDLPLGEGSARLQQGD 91 (430)
T ss_pred hhhhhhcCCcccccCCCCCcccc------CcccccchhheEEEec-CCeEEEEecCCCceeecccccCCCCCccccccCC
Confidence 34455566788999643 24433 4677999999999999 78899999999999999999999987 9999999
Q ss_pred eEEEcCeEEEEEeCh
Q 003567 775 LIEIRGLAFIFETNQ 789 (810)
Q Consensus 775 LIEIggl~fiFllN~ 789 (810)
.|.||+..|.-.+..
T Consensus 92 ~i~iG~y~i~V~l~~ 106 (430)
T COG3456 92 EILIGRYIIRVHLSR 106 (430)
T ss_pred EEeeccEEEEEEecc
Confidence 999999999888853
No 11
>TIGR01663 PNK-3'Pase polynucleotide 5'-kinase 3'-phosphatase. Note that the EC number for the kinase function is: 2.7.1.78
Probab=95.15 E-value=0.032 Score=64.76 Aligned_cols=80 Identities=28% Similarity=0.329 Sum_probs=64.3
Q ss_pred ecceeEeeccCeEEECCCCCCCCcceecCCCCCCccchhhceeeeecCC-CcEEEEecccCCeEECcEEcCCCCccccCC
Q 003567 694 GRHSKHYIKKPEVLLGRATEDVVVDIDLGREGRTNKISRRQAMINMDEA-GSFHLKNLGKCPILVNNKEVPPRQSQGLGS 772 (810)
Q Consensus 694 Gr~~~YyIrs~eVtIGRsT~~~~VDIDLs~EGpaskISRrHA~Ikl~~d-g~F~L~NlGKngI~VNGk~i~~G~~~~L~s 772 (810)
+++....+....|+|||..+..-- .++-||+|-.++-+.+ |...++.+|.||.-|||+.+.+|..+.|.+
T Consensus 22 ~~~~~~~~~~~~~~~gr~pet~i~---------d~~cs~~qv~l~a~~~~~~v~~k~lg~np~~~~~~~~~~~~~~~l~~ 92 (526)
T TIGR01663 22 AEHHFIHLDAGALFLGRGPETGIR---------DRKCSKRQIELQADLEKATVALKQLGVNPCGTGGLELKPGGEGELGH 92 (526)
T ss_pred CCCCeeccCCCceEEccCcccccc---------hhhhchhhheeeecccCceEEEEEccCCCcccCceEecCCCeeeecC
Confidence 344444455678899997655433 4677999999998865 788899999999999999999999999999
Q ss_pred CCeEEEcCeE
Q 003567 773 SCLIEIRGLA 782 (810)
Q Consensus 773 gsLIEIggl~ 782 (810)
|++++|=--+
T Consensus 93 g~~l~~v~~~ 102 (526)
T TIGR01663 93 GDLLEIVNGL 102 (526)
T ss_pred CCEEEEeccc
Confidence 9999985333
No 12
>KOG0245 consensus Kinesin-like protein [Cytoskeleton]
Probab=93.21 E-value=0.68 Score=57.47 Aligned_cols=95 Identities=25% Similarity=0.277 Sum_probs=76.7
Q ss_pred ceEEEEecc--------eeEeeccCeEEECCCCCCCCcceecCCCCCCccchhhceeeeecCC-CcEEEEecccCCeEEC
Q 003567 688 AFAILYGRH--------SKHYIKKPEVLLGRATEDVVVDIDLGREGRTNKISRRQAMINMDEA-GSFHLKNLGKCPILVN 758 (810)
Q Consensus 688 AlAvL~Gr~--------~~YyIrs~eVtIGRsT~~~~VDIDLs~EGpaskISRrHA~Ikl~~d-g~F~L~NlGKngI~VN 758 (810)
-.+-|.+-+ .-|||+.=+..|||......-||=|+ | ..|--.|++|+.... .-..|..-+.--+|||
T Consensus 453 k~phLVNLneDPllSe~LlY~ikeG~TrVG~~~a~~~~DI~Ls--G--~~I~~qHC~i~~~~g~~~vtl~p~e~aetyVN 528 (1221)
T KOG0245|consen 453 KTPHLVNLNEDPLLSECLLYYIKEGETRVGREDASSRQDIVLS--G--QLIREQHCSIRNEGGNDVVTLEPCEDAETYVN 528 (1221)
T ss_pred cCcceeccCCCchhhccEEEEeccCceecCCCCcccCCceEec--c--hhhhhhceEEEecCCCceEEeccCCccceeEc
Confidence 445555544 56999999999999999999999996 4 457789999998743 2488888889999999
Q ss_pred cEEcCCCCccccCCCCeEEEcCeEEEEEeCh
Q 003567 759 NKEVPPRQSQGLGSSCLIEIRGLAFIFETNQ 789 (810)
Q Consensus 759 Gk~i~~G~~~~L~sgsLIEIggl~fiFllN~ 789 (810)
||.|. .+..|++|+.|=+|| .-+|..|.
T Consensus 529 Gk~v~--ep~qL~~GdRiilG~-~H~frfn~ 556 (1221)
T KOG0245|consen 529 GKLVT--EPTQLRSGDRIILGG-NHVFRFNH 556 (1221)
T ss_pred cEEcC--CcceeccCCEEEEcC-ceeEEecC
Confidence 99997 588999999999998 44555554
No 13
>KOG1881 consensus Anion exchanger adaptor protein Kanadaptin, contains FHA domain [General function prediction only]
Probab=92.87 E-value=0.11 Score=62.15 Aligned_cols=79 Identities=23% Similarity=0.358 Sum_probs=66.2
Q ss_pred ccCeEEECCCCCCCCcceecCCCCCCccchhhceeeeecCCC-c---------EEEEeccc-CCeEECcEEcCCCCcccc
Q 003567 702 KKPEVLLGRATEDVVVDIDLGREGRTNKISRRQAMINMDEAG-S---------FHLKNLGK-CPILVNNKEVPPRQSQGL 770 (810)
Q Consensus 702 rs~eVtIGRsT~~~~VDIDLs~EGpaskISRrHA~Ikl~~dg-~---------F~L~NlGK-ngI~VNGk~i~~G~~~~L 770 (810)
.+..++|||-+ .-|+=| + ..-|||-||+|.|...| . |||..+|. .|.|+|-.+|++-.=+++
T Consensus 175 ~~~~~~fgr~~---~cD~~~--e--HpsISr~h~vlQy~~~~~~~p~~s~~~g~~i~dlgsThgt~~NK~rvppk~yir~ 247 (793)
T KOG1881|consen 175 GAAACLFGRLG---GCDVAL--E--HPSISRFHAVLQYKASGPDDPCASNGEGWYIYDLGSTHGTFLNKDRVPPKVYIRD 247 (793)
T ss_pred cceeEEecccC---CCcccc--c--cCcccccceeeeccCCCCCccccCCCCceEEeeccccccceeccccCCCcchhhh
Confidence 34457899976 334444 2 45799999999999753 4 99999998 999999999999999999
Q ss_pred CCCCeEEEcCeEEEEEe
Q 003567 771 GSSCLIEIRGLAFIFET 787 (810)
Q Consensus 771 ~sgsLIEIggl~fiFll 787 (810)
+=|.++++||=.++|++
T Consensus 248 ~Vg~v~~fggsTrl~i~ 264 (793)
T KOG1881|consen 248 RVGHVARFGGSTRLYIF 264 (793)
T ss_pred hHHHHHHhcCceEEEEe
Confidence 99999999999999886
No 14
>KOG1882 consensus Transcriptional regulator SNIP1, contains FHA domain [Signal transduction mechanisms]
Probab=88.78 E-value=0.65 Score=49.94 Aligned_cols=53 Identities=21% Similarity=0.305 Sum_probs=45.8
Q ss_pred CccchhhceeeeecC------CC------cEEEEeccc-CCeEECcEEcCCCCccccCCCCeEEEc
Q 003567 727 TNKISRRQAMINMDE------AG------SFHLKNLGK-CPILVNNKEVPPRQSQGLGSSCLIEIR 779 (810)
Q Consensus 727 askISRrHA~Ikl~~------dg------~F~L~NlGK-ngI~VNGk~i~~G~~~~L~sgsLIEIg 779 (810)
...-|.+||+|.|.. || .-||-.||. ||.|+|.++|.+-.-+-|..+++|-+|
T Consensus 211 hpScSKQHaviQyR~v~~~r~dGt~grrvkpYiiDLgS~NgTfLNnk~IepqRYyEL~ekDvlkfg 276 (293)
T KOG1882|consen 211 HPSCSKQHAVIQYRLVEFTRADGTVGRRVKPYIIDLGSGNGTFLNNKVIEPQRYYELREKDVLKFG 276 (293)
T ss_pred CccccccceeeeeeecccccCCCccceeeeeEEEecCCCCcceecCcccCchheeeeecCceeeec
Confidence 445689999999984 43 368999997 999999999999888999999999887
No 15
>TIGR02500 type_III_yscD type III secretion apparatus protein, YscD/HrpQ family. This family represents a conserved protein of bacterial type III secretion systems. Gene symbols are variable from species to species. Members are designated YscD in Yersinia, HrpQ in Pseudomonas syringae, and EscD in enteropathogenic Escherichia coli. In the Chlamydiae, this model describes the C-terminal 400 residues of a longer protein.
Probab=86.77 E-value=2.1 Score=48.23 Aligned_cols=89 Identities=20% Similarity=0.315 Sum_probs=62.2
Q ss_pred eEEEEecc--eeEeeccCeEEEC-CCCCCCCcceecCCCCCCccchhhceeeeecCCCcEEEEecccCCeEECcEEcCCC
Q 003567 689 FAILYGRH--SKHYIKKPEVLLG-RATEDVVVDIDLGREGRTNKISRRQAMINMDEAGSFHLKNLGKCPILVNNKEVPPR 765 (810)
Q Consensus 689 lAvL~Gr~--~~YyIrs~eVtIG-RsT~~~~VDIDLs~EGpaskISRrHA~Ikl~~dg~F~L~NlGKngI~VNGk~i~~G 765 (810)
+-+|.|.+ ..+.+..-+.+|| |. -|+||-+ ....|||+|++|....+| +.|..- ..++++||.++.-.
T Consensus 3 lrvl~G~~~G~~~~L~~g~~~iG~~~-----~~~di~L--~d~~~~~~h~~l~v~~~~-~~l~~~-~~~~~~~g~~~~~~ 73 (410)
T TIGR02500 3 LRVLSGPHRGAELPLPEGNLVLGTDA-----ADCDIVL--SDGGIAAVHVSLHVRLEG-VTLAGA-VEPAWEEGGVLPDE 73 (410)
T ss_pred EEEecCCCCCcEEECCCCceEeccCC-----CCcEEEe--CCCCccchheEEEEcCce-EEEecC-CcceeECCcccccC
Confidence 34555553 5666777778999 76 4444433 366799999999999766 444422 23489999444444
Q ss_pred CccccCCCCeEEEcCeEEEEE
Q 003567 766 QSQGLGSSCLIEIRGLAFIFE 786 (810)
Q Consensus 766 ~~~~L~sgsLIEIggl~fiFl 786 (810)
.-..|..+..|+++++.|.|=
T Consensus 74 ~g~~l~~~~~l~~g~~~~~~g 94 (410)
T TIGR02500 74 EGTPLPSGTPLLVAGVAFALG 94 (410)
T ss_pred CCCccCCCCceecceeEEecc
Confidence 445688999999999999993
No 16
>KOG2294 consensus Transcription factor of the Forkhead/HNF3 family [Transcription]
Probab=75.68 E-value=4.2 Score=45.30 Aligned_cols=92 Identities=25% Similarity=0.274 Sum_probs=75.4
Q ss_pred ceeEeeccCeEEECCCCCC------CCccee--cCCCCCCccchhhceeeeecCC-CcEEEEecccCCeEECcEEcCCC-
Q 003567 696 HSKHYIKKPEVLLGRATED------VVVDID--LGREGRTNKISRRQAMINMDEA-GSFHLKNLGKCPILVNNKEVPPR- 765 (810)
Q Consensus 696 ~~~YyIrs~eVtIGRsT~~------~~VDID--Ls~EGpaskISRrHA~Ikl~~d-g~F~L~NlGKngI~VNGk~i~~G- 765 (810)
+|.|++.+..+++||.... ...+++ ....|+...++|.|+.|.+... ..|.+...|+++.+|.+..-..+
T Consensus 59 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~kpp~SY~~L 138 (454)
T KOG2294|consen 59 DFTYYVQKLHVILGRPGSSSNSSPSASSGVDVNVQDLGPTKAISRKHAKIFYDLGRQRFSLPVPGKNGAGVKPPYSYSGL 138 (454)
T ss_pred cceeeccchhhccccccccccccccccccccccccccCCcccccccccccccccccCCccccccccCCCCcCCccccccc
Confidence 7999999999999995332 122221 1123889999999999999976 68999999999888888887777
Q ss_pred --CccccCCCCeEEEcCeEEEEEe
Q 003567 766 --QSQGLGSSCLIEIRGLAFIFET 787 (810)
Q Consensus 766 --~~~~L~sgsLIEIggl~fiFll 787 (810)
..|.+..+..|.++++-+.|+.
T Consensus 139 I~mAI~~Sp~krLtLs~Iy~~i~~ 162 (454)
T KOG2294|consen 139 IAMAIRLSPGKRLTLGGIYFYILL 162 (454)
T ss_pred cccccccCCCcceeecCeeEEEEe
Confidence 5889999999999999999997
No 17
>KOG2293 consensus Daxx-interacting protein MSP58/p78, contains FHA domain [Transcription; Signal transduction mechanisms]
Probab=65.75 E-value=3.8 Score=48.15 Aligned_cols=109 Identities=19% Similarity=0.206 Sum_probs=86.5
Q ss_pred CCCCccCCCCCCCCCCCCCCCCCCCCCcccHHHHHhcCCCC-CCCchhh-hhhhhccccHHHH---HHHHHHHhhhhhH-
Q 003567 605 DAEPIMNPSTTEPEDPSVESDDDDVPYFSDIEAMILDMDLD-PDDQGIY-EQEVSKYQHEDTR---RAIIRLEQGAHSY- 678 (810)
Q Consensus 605 ~~~~~~y~ll~dQ~~~~~~s~~d~vpsFSDaE~mIld~dL~-p~dq~~~-~~Evsr~q~~~~k---r~I~rLEqe~~s~- 678 (810)
++.+++|+++++|++.|.... |+ ++|+++|+.+....+. +.|++.. +.|.. +.+.+.+ +.|+.||++..+|
T Consensus 330 ~~l~k~~s~~e~~~v~p~~~s-d~-l~~~~ae~q~~~~~~~~e~DE~Le~diEam-i~D~dl~p~~qd~r~le~e~~r~~ 406 (547)
T KOG2293|consen 330 WQLMKQYSCLEDQEVTPQNES-DH-LRRIDAEDQIQGENYNEESDEELESDIEAM-ILDMDLEPDDQDIRSLEAEKSRSQ 406 (547)
T ss_pred hhhhhhcccccccccccccCC-cc-cccccchhccchhhhcccccccccchHHHH-HhhcccCCcchHHHHHHHHHhhhH
Confidence 368999999999999999877 66 9999999999999984 7887743 46774 7888888 9999999999998
Q ss_pred -hHHhhcCCcceEEEEecceeEeec-------cCeEEECCCCCC--CCcceecCC
Q 003567 679 -MQRAILSHGAFAILYGRHSKHYIK-------KPEVLLGRATED--VVVDIDLGR 723 (810)
Q Consensus 679 -~~r~i~~~~AlAvL~Gr~~~YyIr-------s~eVtIGRsT~~--~~VDIDLs~ 723 (810)
|.+.+..-.+ --.+||+ .-.|+=||-+.. .+-.|=|++
T Consensus 407 ~l~~~iirleq-------s~~~~mqrai~~hgAiAvL~Gr~skh~mrk~EVtlGR 454 (547)
T KOG2293|consen 407 VLVRSIIRLEQ-------SAESYMQRAIAFHGAIAVLYGRFSKHYMRKKEVTLGR 454 (547)
T ss_pred HHHHHhhhhhh-------cccchhhhhhhhcceeEEEechhhHhhhcCcceEeec
Confidence 6676654221 2467888 888999997776 466677743
No 18
>KOG0241 consensus Kinesin-like protein [Cytoskeleton]
Probab=58.52 E-value=44 Score=42.43 Aligned_cols=82 Identities=24% Similarity=0.246 Sum_probs=61.5
Q ss_pred eeEeeccCeEEECCCCCCCCcceecCCCCCCccchhhceeeeecCCCcEEEEecccCCeEECcEEcCCCCccccCCCCeE
Q 003567 697 SKHYIKKPEVLLGRATEDVVVDIDLGREGRTNKISRRQAMINMDEAGSFHLKNLGKCPILVNNKEVPPRQSQGLGSSCLI 776 (810)
Q Consensus 697 ~~YyIrs~eVtIGRsT~~~~VDIDLs~EGpaskISRrHA~Ikl~~dg~F~L~NlGKngI~VNGk~i~~G~~~~L~sgsLI 776 (810)
..||++..+ +|| .....||-|+ --.|=++|++|.+..+|..++.-+-.-.++|||..+- +++.|.||+-|
T Consensus 461 lvyyl~~~t-lig---~~~~~~i~l~----glgi~p~h~vidI~~dg~l~~~p~~~~R~~VNGs~v~--~~t~L~~GdRi 530 (1714)
T KOG0241|consen 461 LVYYLKDHT-LIG---LFKSQDIQLS----GLGIQPKHCVIDIESDGELRLTPLLNARSCVNGSLVC--STTQLWHGDRI 530 (1714)
T ss_pred HHHhhcCce-eec---cccCcceeee----cCcccCccceeeeccCCcEEecccccceeeecCceec--cccccccCceE
Confidence 456665554 455 3345666664 3367799999999999998888888778999999885 68999999999
Q ss_pred EEcCeEEEEEeCh
Q 003567 777 EIRGLAFIFETNQ 789 (810)
Q Consensus 777 EIggl~fiFllN~ 789 (810)
-.|.--| |.+|-
T Consensus 531 LwGnnHF-FrvN~ 542 (1714)
T KOG0241|consen 531 LWGNNHF-FRVNL 542 (1714)
T ss_pred Eecccce-EEecC
Confidence 8886655 55543
No 19
>PF03166 MH2: MH2 domain; InterPro: IPR001132 Mammalian dwarfins are phosphorylated in response to transforming growth factor beta and are implicated in control of cell growth []. The dwarfin family also includes the Drosophila protein MAD that is required for the function of decapentaplegic (DPP) and may play a role in DPP signalling. Drosophila Mad binds to DNA and directly mediates activation of vestigial by Dpp []. This domain is also found in nuclear factor I (NF-I) or CCAAT box-binding transcription factor (CTF). This entry represents the SMAD (Mothers against decapentaplegic (MAD) homologue) (also called MH2 for MAD homology 2) domain found at the carboxy terminus of MAD related proteins such as Smads. This domain is separated from the MH1 domain by a non-conserved linker region. The MH2 domain mediates interaction with a wide variety of proteins and provides specificity and selectivity to Smad function and also is critical for mediating interactions in Smad oligomers. Unlike MH1, MH2 does not bind DNA. The well-studied MH2 domain of Smad4 is composed of five alpha helices and three loops enclosing a beta sandwich. Smads are involved in the propagation of TGF-beta signals by direct association with the TGF-beta receptor kinase which phosphorylates the last two Ser of a conserved 'SSXS' motif located at the C terminus of MH2 [, , ].; GO: 0006355 regulation of transcription, DNA-dependent, 0005622 intracellular; PDB: 1MK2_A 1U7F_A 1MJS_A 1KHU_A 1DD1_C 1G88_A 1U7V_B 1MR1_B 1YGS_A 3DIT_B ....
Probab=53.65 E-value=49 Score=33.66 Aligned_cols=66 Identities=23% Similarity=0.364 Sum_probs=36.3
Q ss_pred eEeeccCeEEE-CCCCCCCCcceecCCC---CCCccc--hhhc----eeeeecCCCcEEEEecccCCeEECcEEcC
Q 003567 698 KHYIKKPEVLL-GRATEDVVVDIDLGRE---GRTNKI--SRRQ----AMINMDEAGSFHLKNLGKCPILVNNKEVP 763 (810)
Q Consensus 698 ~YyIrs~eVtI-GRsT~~~~VDIDLs~E---GpaskI--SRrH----A~Ikl~~dg~F~L~NlGKngI~VNGk~i~ 763 (810)
.|..++..|+| |-......-.+-|+.. .....+ -|+| ..|++..+|+.+|+|+++.+|||+.....
T Consensus 21 ~f~~~~~~v~idG~~d~~~~~r~~Lg~~~n~~R~~~~~~~R~~IG~Gi~l~~~~~G~V~l~n~s~~pVFVqS~~~n 96 (181)
T PF03166_consen 21 AFKARSPSVIIDGFTDPSDGDRFCLGQLSNVNRDSKTEKIRRHIGKGIKLSYEEDGNVWLYNRSDSPVFVQSPTLN 96 (181)
T ss_dssp EEEEESSEEEEESSSSSSSSSEEECTT---TT--HHHHHHHTTCTT-EEEEEETTTEEEEEE-SSS-EEEE-HHHH
T ss_pred eeEccCCeEEEeeccCCCCCCcEecCccCCCCCChHHhhHHheecCcEEEEEecCCeEEEEECCCCCEEEccCCCC
Confidence 35567777655 4322223333556321 111122 2444 45677778999999999999999865543
No 20
>PF07273 DUF1439: Protein of unknown function (DUF1439); InterPro: IPR010835 This family consists of several hypothetical bacterial proteins of around 190 residues in length. Several members of this family are annotated as being putative lipoproteins and are often known as YceB. The function of this family is unknown.; PDB: 3L6I_B.
Probab=47.61 E-value=15 Score=36.24 Aligned_cols=76 Identities=22% Similarity=0.339 Sum_probs=46.1
Q ss_pred HhhhhhHhHHhhcCCcceEEEEe---c-ceeEeeccCeEEECCCCCCC---CcceecC--C-CC--CCccchhhceeeee
Q 003567 672 EQGAHSYMQRAILSHGAFAILYG---R-HSKHYIKKPEVLLGRATEDV---VVDIDLG--R-EG--RTNKISRRQAMINM 739 (810)
Q Consensus 672 Eqe~~s~~~r~i~~~~AlAvL~G---r-~~~YyIrs~eVtIGRsT~~~---~VDIDLs--~-EG--paskISRrHA~Ikl 739 (810)
|++++.|+++-+ .|-+=.| - .+.+-+.+..|.|||...+. ..|+++. . -| ++..--.--|..+|
T Consensus 3 E~eiq~~L~k~~----~~~k~~g~~gl~~~~v~l~~~~v~ig~~~~~~i~l~~~~~~~i~~~~~~~~~~~~l~~s~~p~Y 78 (152)
T PF07273_consen 3 EQEIQQYLAKKF----PYQKKVGIPGLFPADVTLSNPKVQIGRDDPDRIALSADADVSINSPLGPYPASGKLTLSGQPRY 78 (152)
T ss_dssp HHHHHHHHHCC------EEEEEEETTTEEEEEEEEEEEEEESSSSTT-EEEEEEEEEEEEETTEEEEEEEEEEEEEEEEE
T ss_pred HHHHHHHHHHhC----ChhhhcccCCeEEEEEEEcCceEecCCCCCCEEEEEEEEEEEEeccCCCcceEEEEEEEEEEEE
Confidence 566666544333 4444444 2 58888999999999877662 2333332 1 12 24444466678888
Q ss_pred cC-CCcEEEEecc
Q 003567 740 DE-AGSFHLKNLG 751 (810)
Q Consensus 740 ~~-dg~F~L~NlG 751 (810)
+. +|.+||+++=
T Consensus 79 D~~~~avyL~~l~ 91 (152)
T PF07273_consen 79 DAEKGAVYLKDLR 91 (152)
T ss_dssp ETTTTEEEEEEEE
T ss_pred ecCCCeEEEccce
Confidence 86 5999998753
No 21
>PRK10598 lipoprotein; Provisional
Probab=45.31 E-value=29 Score=36.19 Aligned_cols=55 Identities=18% Similarity=0.233 Sum_probs=32.9
Q ss_pred ceeEeeccCeEEECCCCCC-------CCcceecCCCCC--CccchhhceeeeecC-CCcEEEEecc
Q 003567 696 HSKHYIKKPEVLLGRATED-------VVVDIDLGREGR--TNKISRRQAMINMDE-AGSFHLKNLG 751 (810)
Q Consensus 696 ~~~YyIrs~eVtIGRsT~~-------~~VDIDLs~EGp--askISRrHA~Ikl~~-dg~F~L~NlG 751 (810)
...+-+....+.|||...+ ..|+|.. ..|+ +..--.--|.-.|+. .|.+||+++=
T Consensus 53 ~a~i~l~~l~~~IGr~~~~~v~l~g~a~v~v~~-~~g~~~a~l~l~~~a~P~Yd~e~gAIYLk~l~ 117 (186)
T PRK10598 53 DAHIVLTNLTSQIGREEPNKVTLTGDANLDISS-LFGSQKADMKLTLKAQPVFDKEKGAIYLKDME 117 (186)
T ss_pred eeEEEeeeceeecCCCCCCEEEEeceeeeeeec-cCCCcCcEEEEEEEEeeeEecCCCcEEEecce
Confidence 4577888999999998865 2344442 2243 221122345555664 4888888763
No 22
>PRK11507 ribosome-associated protein; Provisional
Probab=43.99 E-value=37 Score=30.53 Aligned_cols=33 Identities=9% Similarity=0.067 Sum_probs=26.3
Q ss_pred CCeEECcEEcCCCCccccCCCCeEEEcCeEEEEE
Q 003567 753 CPILVNNKEVPPRQSQGLGSSCLIEIRGLAFIFE 786 (810)
Q Consensus 753 ngI~VNGk~i~~G~~~~L~sgsLIEIggl~fiFl 786 (810)
..|+|||+.- +-...+|..|++|+|.|..+...
T Consensus 37 g~V~VNGeve-~rRgkKl~~GD~V~~~g~~~~v~ 69 (70)
T PRK11507 37 GQVKVDGAVE-TRKRCKIVAGQTVSFAGHSVQVV 69 (70)
T ss_pred CceEECCEEe-cccCCCCCCCCEEEECCEEEEEe
Confidence 5699999854 34567899999999999887653
No 23
>KOG0615 consensus Serine/threonine protein kinase Chk2 and related proteins [Cell cycle control, cell division, chromosome partitioning]
Probab=43.56 E-value=25 Score=41.00 Aligned_cols=78 Identities=21% Similarity=0.111 Sum_probs=54.1
Q ss_pred cCeEEECCCCCCC--Ccce---ecCCCC-CCccchhhceeeeecC-CCcEEEEecccCCeEECcEEcCCCCccccCCCCe
Q 003567 703 KPEVLLGRATEDV--VVDI---DLGREG-RTNKISRRQAMINMDE-AGSFHLKNLGKCPILVNNKEVPPRQSQGLGSSCL 775 (810)
Q Consensus 703 s~eVtIGRsT~~~--~VDI---DLs~EG-paskISRrHA~Ikl~~-dg~F~L~NlGKngI~VNGk~i~~G~~~~L~sgsL 775 (810)
+.+-++||..... -=++ |...++ --.++|..|-.|.-+. ...+||+...+||.+||-..+..|....|.+++.
T Consensus 63 nd~f~fGR~~~~d~~ln~~~~s~~~~~i~~~~~~~~~~f~~dr~~~sn~~y~~DhS~nGT~VN~e~i~k~~~r~lkN~de 142 (475)
T KOG0615|consen 63 NDEFTFGRGDSCDAPLNLNNVSNKHFKILLYNKISKIHFRIDRDKNSNRVYLHDHSRNGTFVNDEMIGKGLSRILKNGDE 142 (475)
T ss_pred cceEEecCCCcccccccCccccccchheeeeeeeeeeeecccCCCccceEEEEecccCcccccHhHhhccccccccCCCE
Confidence 3456788874331 1112 222221 1336666665554433 3679999999999999999999999999999999
Q ss_pred EEEcC
Q 003567 776 IEIRG 780 (810)
Q Consensus 776 IEIgg 780 (810)
|-|+-
T Consensus 143 i~is~ 147 (475)
T KOG0615|consen 143 ISISI 147 (475)
T ss_pred EEecc
Confidence 99873
No 24
>KOG1880 consensus Nuclear inhibitor of phosphatase-1 [General function prediction only]
Probab=42.43 E-value=29 Score=38.82 Aligned_cols=69 Identities=22% Similarity=0.277 Sum_probs=58.4
Q ss_pred EEECCCCCCCCcceecCCCCCCccchhhceeeeecCCCc-EEEEeccc-CCeEECcEEcCCCCccccCCCCeEEEcC
Q 003567 706 VLLGRATEDVVVDIDLGREGRTNKISRRQAMINMDEAGS-FHLKNLGK-CPILVNNKEVPPRQSQGLGSSCLIEIRG 780 (810)
Q Consensus 706 VtIGRsT~~~~VDIDLs~EGpaskISRrHA~Ikl~~dg~-F~L~NlGK-ngI~VNGk~i~~G~~~~L~sgsLIEIgg 780 (810)
-++||+...+..+||- ...||.||.+-|...++ |+|-.+|. -+.|+--..+.+-..+.|.-|+-.-+|-
T Consensus 40 y~Fgrn~q~~df~idh------~scSrvhaa~vyhkhl~~~~lidl~s~hgtf~g~~rL~~~~p~~l~i~~~~~fga 110 (337)
T KOG1880|consen 40 YLFGRNHQTCDFVIDH------ASCSRVHAALVYHKHLSRIFLIDLGSTHGTFLGNERLEPHKPVQLEIGSTFHFGA 110 (337)
T ss_pred hhhccCCCccceEeec------chhhhhHhhhhhhhccceEEEEEccCCcceeeeeeeeccCCCccccCCceEEEec
Confidence 4689998887777776 56899999999998876 99999997 8999999999998888888888777763
No 25
>PRK15367 type III secretion system protein SsaD; Provisional
Probab=35.24 E-value=45 Score=38.44 Aligned_cols=74 Identities=22% Similarity=0.343 Sum_probs=49.9
Q ss_pred CeEEECCCCCCCCcceecCCCCCCccchhhceeeeecCCCcEEEEecccCCeEECcEEcCCCCccccCCCCeEEEcCeEE
Q 003567 704 PEVLLGRATEDVVVDIDLGREGRTNKISRRQAMINMDEAGSFHLKNLGKCPILVNNKEVPPRQSQGLGSSCLIEIRGLAF 783 (810)
Q Consensus 704 ~eVtIGRsT~~~~VDIDLs~EGpaskISRrHA~Ikl~~dg~F~L~NlGKngI~VNGk~i~~G~~~~L~sgsLIEIggl~f 783 (810)
=+.+||-. + .||=|.++ .....+++.+++|-|.-. +.-.++|||.+...+++ |.-+.+||++|+-|
T Consensus 24 G~~tlG~~--g--cDi~lpL~------~~~~~~L~i~e~gi~l~~--~~~~vwVnG~~~~~~~~--LPl~q~Ie~aG~~~ 89 (395)
T PRK15367 24 GNLSLGEK--G--CDICIPLT------INEKIILREQADSLFVDA--GKARVRVNGRRFNPNKP--LPSSGVLQVAGVAI 89 (395)
T ss_pred CceeecCC--C--ceEEEECC------CCCEEEEEEcCCcEEEec--CCceEEECCEEcCCCCC--CCCcchhhhcceEE
Confidence 34667762 2 45544332 245566777777765533 23469999999998887 77789999999999
Q ss_pred EEEeChHh
Q 003567 784 IFETNQTC 791 (810)
Q Consensus 784 iFllN~~l 791 (810)
+|=--.+.
T Consensus 90 vlG~~d~~ 97 (395)
T PRK15367 90 AFGKQDCE 97 (395)
T ss_pred EecCcccc
Confidence 99433333
No 26
>COG3354 FlaG Putative archaeal flagellar protein G [Cell motility and secretion]
Probab=30.25 E-value=66 Score=32.77 Aligned_cols=35 Identities=26% Similarity=0.358 Sum_probs=25.9
Q ss_pred cEEEEecccCC---------eEECcEEcC---------CCCccccCCCCeE-EE
Q 003567 744 SFHLKNLGKCP---------ILVNNKEVP---------PRQSQGLGSSCLI-EI 778 (810)
Q Consensus 744 ~F~L~NlGKng---------I~VNGk~i~---------~G~~~~L~sgsLI-EI 778 (810)
.|||||.|+.+ ++|||..+. .|..++|..|.+. ||
T Consensus 73 t~yiKNtG~~~~~fd~~sitVliDG~iv~~a~~~~~~~~gs~i~l~PG~Vg~ev 126 (154)
T COG3354 73 TFYIKNTGSDSIAFDNTSITVLIDGNIVTPAYVTFTSVNGSSIRLSPGQVGREV 126 (154)
T ss_pred EEEEecCCCcccccCCCeEEEEEcCcEeccceEEEEecCCCeeEecCCceeeEE
Confidence 59999999976 478885544 3566778888877 54
No 27
>COG2501 S4-like RNA binding protein [Replication, recombination, and repair]
Probab=28.93 E-value=82 Score=28.68 Aligned_cols=33 Identities=18% Similarity=0.261 Sum_probs=26.4
Q ss_pred CeEECcEEcCCCCccccCCCCeEEEcCeEEEEEe
Q 003567 754 PILVNNKEVPPRQSQGLGSSCLIEIRGLAFIFET 787 (810)
Q Consensus 754 gI~VNGk~i~~G~~~~L~sgsLIEIggl~fiFll 787 (810)
-|+|||+.-.+ ...+|.+|++|+|.|..+.-..
T Consensus 38 ~V~vNGe~EtR-RgkKlr~gd~V~i~~~~~~v~~ 70 (73)
T COG2501 38 EVKVNGEVETR-RGKKLRDGDVVEIPGQRYQVVA 70 (73)
T ss_pred eEEECCeeeec-cCCEeecCCEEEECCEEEEEEe
Confidence 68999987544 4578999999999999876543
No 28
>PF06905 FAIM1: Fas apoptotic inhibitory molecule (FAIM1); InterPro: IPR010695 This family consists of several fas apoptotic inhibitory molecule (FAIM) proteins. FAIM expression is upregulated in B cells by anti-Ig treatment that induces Fas-resistance, and overexpression of FAIM diminishes sensitivity to Fas-mediated apoptosis of B and non-B cell lines. FAIM is highly evolutionarily conserved and is widely expressed in murine tissues, suggesting that FAIM plays an important role in cellular physiology [].; GO: 0043066 negative regulation of apoptosis; PDB: 3MX7_A 2KW1_A 2KD2_A.
Probab=28.84 E-value=9.6 Score=39.30 Aligned_cols=58 Identities=29% Similarity=0.448 Sum_probs=34.1
Q ss_pred cccCCeEECcEEcCCCC-ccccCC-----------CCeEE---EcCeEEEEE--eChHhHHHHHhhhhccccccc
Q 003567 750 LGKCPILVNNKEVPPRQ-SQGLGS-----------SCLIE---IRGLAFIFE--TNQTCVKRYLDSIMKENRTHE 807 (810)
Q Consensus 750 lGKngI~VNGk~i~~G~-~~~L~s-----------gsLIE---Iggl~fiFl--lN~~lV~~~l~~~~kk~q~~~ 807 (810)
.|||-|+|||+.+..-. ..+|-. .+.|. ++|..+.+. +|-..+++|.+...|+.++|+
T Consensus 28 tGkrvI~VDGkei~r~~wmfklvg~e~F~ig~~~~k~~I~I~~~~g~~YeYsL~VdGksl~ky~e~~~k~~~tW~ 102 (177)
T PF06905_consen 28 TGKRVIKVDGKEIVRRDWMFKLVGKETFTIGGKNTKCEINIEAVSGFAYEYSLEVDGKSLKKYKEEQSKKFNTWE 102 (177)
T ss_dssp T--EEEEETTEEEEEE---S---EEEEEEETTTTEEEEEEEEEETTTEEEEEEEETTEEEEE--SSTTTTEEEEE
T ss_pred cCeEEEEECCcEEEEecceeeeCcccEEEECCCceEEEEEEEecCCceEEEEEEECCEEHHHHHHHHhhhheeEE
Confidence 68888999998765422 222222 23333 345555544 688889999999999999996
No 29
>PF09781 NDUF_B5: NADH:ubiquinone oxidoreductase, NDUFB5/SGDH subunit; InterPro: IPR019173 Members of this family mediate the transfer of electrons from NADH to the respiratory chain. The immediate electron acceptor for the enzyme is believed to be ubiquinone, the reaction that occurs being: NADH + ubiquinone = NAD(+) + ubiquinol [, ].
Probab=25.04 E-value=57 Score=34.24 Aligned_cols=35 Identities=26% Similarity=0.373 Sum_probs=30.2
Q ss_pred CCCchhhhhhhhccccHHHHHHHHHHHhhhhhHhH
Q 003567 646 PDDQGIYEQEVSKYQHEDTRRAIIRLEQGAHSYMQ 680 (810)
Q Consensus 646 p~dq~~~~~Evsr~q~~~~kr~I~rLEqe~~s~~~ 680 (810)
|.+|..+|..+.-++.+..|+++|+||++.+..|.
T Consensus 125 ~spq~~YEk~la~l~~e~ek~~lr~~e~~Vr~lm~ 159 (187)
T PF09781_consen 125 PSPQKNYEKMLAYLQIENEKAELRLLEKEVRRLMR 159 (187)
T ss_pred CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 55666788889889999999999999999998764
No 30
>PF07610 DUF1573: Protein of unknown function (DUF1573); InterPro: IPR011467 These hypothetical proteins from bacteria, such as Rhodopirellula baltica, Bacteroides thetaiotaomicron and Porphyromonas gingivalis, share a region of conserved sequence towards their N termini.
Probab=24.13 E-value=1.4e+02 Score=24.01 Aligned_cols=25 Identities=16% Similarity=0.456 Sum_probs=21.4
Q ss_pred cEEEEecccCCeEECcEEcCCCCcc
Q 003567 744 SFHLKNLGKCPILVNNKEVPPRQSQ 768 (810)
Q Consensus 744 ~F~L~NlGKngI~VNGk~i~~G~~~ 768 (810)
.|.|+|.|+.++.|....-.+|-..
T Consensus 1 ~F~~~N~g~~~L~I~~v~tsCgCt~ 25 (45)
T PF07610_consen 1 TFEFTNTGDSPLVITDVQTSCGCTT 25 (45)
T ss_pred CEEEEECCCCcEEEEEeeEccCCEE
Confidence 4899999999999998888887643
No 31
>TIGR02988 YaaA_near_RecF S4 domain protein YaaA. This small protein has a single S4 domain (pfam01479), as do bacterial ribosomal protein S4, some pseudouridine synthases, tyrosyl-tRNA synthetases. The S4 domain may bind RNA. Members of this protein family are found almost exclusively in the Firmicutes, and almost invariably just a few nucleotides upstream of the gene for the DNA replication and repair protein RecF. The few members of this family that are not near recF are found instead near dnaA and/or dnaN, the usual neighbors of recF, near the origin of replication. The conserved location suggests a possible role in replication in the Firmicutes lineage.
Probab=23.57 E-value=91 Score=25.91 Aligned_cols=24 Identities=33% Similarity=0.387 Sum_probs=19.1
Q ss_pred CeEECcEEcCCCCccccCCCCeEEE
Q 003567 754 PILVNNKEVPPRQSQGLGSSCLIEI 778 (810)
Q Consensus 754 gI~VNGk~i~~G~~~~L~sgsLIEI 778 (810)
.|+|||+.+. -...+|..|+.|+|
T Consensus 35 ~V~VNg~~~~-~~~~~l~~Gd~v~i 58 (59)
T TIGR02988 35 EVLVNGELEN-RRGKKLYPGDVIEI 58 (59)
T ss_pred CEEECCEEcc-CCCCCCCCCCEEEe
Confidence 5899999875 33568999999987
No 32
>KOG4352 consensus Fas-mediated apoptosis inhibitor FAIM [Signal transduction mechanisms]
Probab=22.41 E-value=47 Score=34.12 Aligned_cols=58 Identities=28% Similarity=0.456 Sum_probs=39.9
Q ss_pred cccCCeEECcEEcCCCC-cccc---------CCCCeEEEc---CeE--EEEEeChHhHHHHHhhhhccccccc
Q 003567 750 LGKCPILVNNKEVPPRQ-SQGL---------GSSCLIEIR---GLA--FIFETNQTCVKRYLDSIMKENRTHE 807 (810)
Q Consensus 750 lGKngI~VNGk~i~~G~-~~~L---------~sgsLIEIg---gl~--fiFllN~~lV~~~l~~~~kk~q~~~ 807 (810)
-|||-|+|||+.+..-. ..+| .-.|+|.|. |.. .-..+|-+..++|.+...|..+.|+
T Consensus 27 sgrr~i~v~gre~lrr~wMFKLVGketF~vg~tkciInvda~~gFaYEYsL~inGKs~~ky~Ed~~k~~~~W~ 99 (187)
T KOG4352|consen 27 SGRRMIWVNGREVLRRDWMFKLVGKETFHVGQTKCIINVDAAPGFAYEYSLYINGKSHDKYTEDMTKQYRLWL 99 (187)
T ss_pred cccEEEEEcCHHHHHHHHHHHhhchheEeecceEEEEEeccCCCceEEEEEEEcCcchHHHHHHhhhheeEEE
Confidence 48899999998876532 2233 234555543 222 3345789999999999999988886
No 33
>cd00050 MH2 MH2 domain; C terminal domain of SMAD family proteins, responsible for receptor interaction, transactivation, and homo- and heterooligomerisation; also known as Domain B in dwarfin family proteins
Probab=21.77 E-value=1.3e+02 Score=31.19 Aligned_cols=43 Identities=14% Similarity=0.281 Sum_probs=30.3
Q ss_pred eeeeecCCCcEEEEecccCCeEECcEEcCCC------CccccCCCCeEEE
Q 003567 735 AMINMDEAGSFHLKNLGKCPILVNNKEVPPR------QSQGLGSSCLIEI 778 (810)
Q Consensus 735 A~Ikl~~dg~F~L~NlGKngI~VNGk~i~~G------~~~~L~sgsLIEI 778 (810)
.+|++.. |+.+|+|+++.+|||++-.+..- ...++..|+-|-|
T Consensus 69 v~L~~~~-g~Vw~~~~S~~~VFVqS~~l~~~~~~~~~~V~Kv~pg~~lKv 117 (176)
T cd00050 69 VQLSYEN-GEVWAYNLSDHPIFVQSPTLDYPLGRPLLTVHKVPPGYSLKV 117 (176)
T ss_pred EEEEEeC-CeEEEEEcCCCCEEEcCCCCCcccCCCCcceEEeCCCCEEEE
Confidence 3455664 99999999999999998765531 3356666655543
No 34
>smart00524 DWB Domain B in dwarfin family proteins.
Probab=21.34 E-value=1.3e+02 Score=31.03 Aligned_cols=41 Identities=20% Similarity=0.297 Sum_probs=30.1
Q ss_pred eeeecCCCcEEEEecccCCeEECcEEcCC------CCccccCCCCeEE
Q 003567 736 MINMDEAGSFHLKNLGKCPILVNNKEVPP------RQSQGLGSSCLIE 777 (810)
Q Consensus 736 ~Ikl~~dg~F~L~NlGKngI~VNGk~i~~------G~~~~L~sgsLIE 777 (810)
+|++. +|+.+|+|+++.+|||+...+.. ....+|..|+-|-
T Consensus 65 ~L~~~-~g~Vw~~~~s~~~VFVqS~~~~~~~~~~~~~V~Kv~pg~~lK 111 (171)
T smart00524 65 QLSYE-NGDVWLYNRSDSPIFVQSPYLDEPGGRTLDTVHKLPPGYSIK 111 (171)
T ss_pred EEEEe-CCeEEEEEcCCCCeEEcCCCcccccCCCCcceEEECCCCeEE
Confidence 55665 49999999999999999777653 2345666666644
No 35
>smart00797 AHS2 Allophanate hydrolase subunit 2. This domain represents subunit 2 of allophanate hydrolase (AHS2).
Probab=20.71 E-value=1.3e+02 Score=33.18 Aligned_cols=42 Identities=14% Similarity=0.265 Sum_probs=34.3
Q ss_pred EEEEecc-cCCeEECcEEcCCCCccccCCCCeEEEc----CeEEEEE
Q 003567 745 FHLKNLG-KCPILVNNKEVPPRQSQGLGSSCLIEIR----GLAFIFE 786 (810)
Q Consensus 745 F~L~NlG-KngI~VNGk~i~~G~~~~L~sgsLIEIg----gl~fiFl 786 (810)
-.|...| .-.+.|||+++...+.+.++.|++|+|+ |.+-++-
T Consensus 46 ~~iAitGA~~~~~ln~~~~~~~~~~~v~~Gd~L~~g~~~~G~R~YLA 92 (280)
T smart00797 46 AVIALTGADFPATLDGQPVPPWKPFLVRAGQVLSLGAPKAGARAYLA 92 (280)
T ss_pred cEEEEeCCCCeeeECCEEcCCCeEEEECCCCEEEeCCCCCccEEEEE
Confidence 4466677 5789999999999999999999999999 5554443
Done!