Query 003570
Match_columns 810
No_of_seqs 47 out of 49
Neff 3.0
Searched_HMMs 46136
Date Fri Mar 29 01:56:06 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/003570.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/003570hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG0161 Myosin class II heavy 99.5 8E-08 1.7E-12 119.9 65.2 406 128-564 905-1324(1930)
2 KOG0161 Myosin class II heavy 99.5 7.6E-08 1.6E-12 120.1 61.8 489 108-669 836-1333(1930)
3 TIGR00606 rad50 rad50. This fa 99.4 4.9E-06 1.1E-10 101.6 65.7 78 349-426 573-652 (1311)
4 TIGR02168 SMC_prok_B chromosom 99.3 5.6E-06 1.2E-10 96.2 57.6 177 199-382 307-483 (1179)
5 TIGR02169 SMC_prok_A chromosom 99.3 1.3E-05 2.8E-10 93.9 63.4 57 751-807 952-1015(1164)
6 TIGR02168 SMC_prok_B chromosom 99.3 1.6E-06 3.6E-11 100.5 52.4 27 62-88 140-166 (1179)
7 PRK02224 chromosome segregatio 99.2 1.8E-05 4E-10 92.0 56.2 89 582-670 600-693 (880)
8 COG1196 Smc Chromosome segrega 99.2 3.7E-05 8.1E-10 93.2 60.4 309 464-806 675-1005(1163)
9 TIGR00606 rad50 rad50. This fa 99.1 8.6E-05 1.9E-09 91.1 59.3 110 572-681 928-1044(1311)
10 KOG4674 Uncharacterized conser 99.0 0.00027 5.8E-09 88.8 55.8 432 111-563 179-718 (1822)
11 PRK03918 chromosome segregatio 99.0 0.00028 6.1E-09 82.0 60.9 36 628-663 664-699 (880)
12 TIGR02169 SMC_prok_A chromosom 99.0 0.00032 6.8E-09 82.5 59.4 45 129-173 235-279 (1164)
13 PRK02224 chromosome segregatio 98.9 0.0004 8.7E-09 81.1 58.4 41 131-173 187-227 (880)
14 KOG4674 Uncharacterized conser 98.9 0.00092 2E-08 84.2 64.6 386 278-686 670-1102(1822)
15 COG1196 Smc Chromosome segrega 98.6 0.0068 1.5E-07 74.2 52.7 231 450-681 675-914 (1163)
16 PF05557 MAD: Mitotic checkpoi 98.5 1.3E-07 2.9E-12 108.7 7.4 131 533-683 405-535 (722)
17 PF07888 CALCOCO1: Calcium bin 98.5 0.0027 5.9E-08 72.8 39.2 93 291-390 144-236 (546)
18 PF05701 WEMBL: Weak chloropla 98.4 0.0031 6.8E-08 71.4 37.3 205 289-512 40-252 (522)
19 PRK01156 chromosome segregatio 98.4 0.014 3E-07 69.1 45.9 29 532-560 467-495 (895)
20 PF01576 Myosin_tail_1: Myosin 98.4 7.2E-08 1.6E-12 113.5 0.0 104 123-236 10-113 (859)
21 KOG4643 Uncharacterized coiled 98.4 0.018 3.8E-07 69.8 51.4 495 114-708 174-708 (1195)
22 PRK03918 chromosome segregatio 98.3 0.02 4.4E-07 66.9 57.0 48 630-677 659-706 (880)
23 PF07888 CALCOCO1: Calcium bin 98.3 0.011 2.4E-07 68.0 38.0 94 213-318 141-234 (546)
24 PF10174 Cast: RIM-binding pro 98.3 0.025 5.5E-07 67.4 58.2 278 355-669 303-601 (775)
25 PRK01156 chromosome segregatio 98.3 0.024 5.3E-07 67.0 61.2 44 130-173 196-239 (895)
26 PF00038 Filament: Intermediat 98.2 0.0058 1.2E-07 63.5 32.2 217 275-519 53-286 (312)
27 PF10174 Cast: RIM-binding pro 98.1 0.049 1.1E-06 65.1 56.1 124 275-405 300-423 (775)
28 PF00038 Filament: Intermediat 98.1 0.014 3.1E-07 60.6 31.7 149 350-521 72-221 (312)
29 PF05557 MAD: Mitotic checkpoi 98.0 3E-05 6.4E-10 89.8 12.2 64 110-173 61-135 (722)
30 PF01576 Myosin_tail_1: Myosin 97.9 1.8E-06 4E-11 101.9 -0.1 496 111-671 223-734 (859)
31 KOG0996 Structural maintenance 97.9 0.068 1.5E-06 65.8 36.6 334 264-651 255-598 (1293)
32 KOG0933 Structural maintenance 97.8 0.17 3.7E-06 61.8 38.8 337 283-664 677-1021(1174)
33 KOG4673 Transcription factor T 97.7 0.25 5.5E-06 58.6 54.6 312 345-674 557-955 (961)
34 KOG0978 E3 ubiquitin ligase in 97.6 0.3 6.6E-06 58.0 50.1 263 194-482 146-419 (698)
35 PF05622 HOOK: HOOK protein; 97.5 1.8E-05 4E-10 91.4 0.0 202 148-387 196-404 (713)
36 COG0419 SbcC ATPase involved i 97.3 0.77 1.7E-05 55.4 59.7 54 339-392 375-428 (908)
37 PF05701 WEMBL: Weak chloropla 97.3 0.6 1.3E-05 53.5 46.6 71 569-639 283-353 (522)
38 PF12128 DUF3584: Protein of u 97.2 1.1 2.3E-05 56.0 61.8 426 110-559 239-750 (1201)
39 PF12128 DUF3584: Protein of u 97.2 1.1 2.4E-05 55.9 54.8 19 108-126 318-336 (1201)
40 PHA02562 46 endonuclease subun 97.2 0.017 3.7E-07 64.1 17.6 101 574-675 248-354 (562)
41 KOG0612 Rho-associated, coiled 97.0 1.8 3.8E-05 54.4 45.0 72 455-526 699-776 (1317)
42 KOG0995 Centromere-associated 96.8 1.7 3.6E-05 51.0 33.7 149 281-445 226-381 (581)
43 KOG0964 Structural maintenance 96.8 1.8 3.9E-05 53.5 30.4 286 382-679 188-502 (1200)
44 PHA02562 46 endonuclease subun 96.8 0.27 5.8E-06 54.9 22.7 62 625-686 332-393 (562)
45 PF15070 GOLGA2L5: Putative go 96.8 1.8 4E-05 51.0 35.7 231 276-560 22-256 (617)
46 PF05622 HOOK: HOOK protein; 96.7 0.00037 8.1E-09 80.9 0.0 206 285-518 181-393 (713)
47 COG0419 SbcC ATPase involved i 96.5 3.2 6.9E-05 50.3 55.6 55 341-395 363-417 (908)
48 PF00261 Tropomyosin: Tropomyo 96.4 1.5 3.3E-05 45.3 23.9 87 346-436 8-94 (237)
49 PRK09039 hypothetical protein; 96.2 0.48 1E-05 51.8 19.2 148 275-440 52-199 (343)
50 TIGR03185 DNA_S_dndD DNA sulfu 96.1 4 8.6E-05 47.7 30.7 82 345-426 208-289 (650)
51 PF09789 DUF2353: Uncharacteri 96.1 0.68 1.5E-05 50.8 20.0 181 287-490 13-216 (319)
52 PF09726 Macoilin: Transmembra 96.1 4.8 0.0001 48.3 28.2 66 349-418 463-528 (697)
53 KOG4593 Mitotic checkpoint pro 96.0 5.1 0.00011 48.1 48.2 188 356-554 254-474 (716)
54 KOG0250 DNA repair protein RAD 96.0 6.4 0.00014 49.2 31.8 198 342-553 270-487 (1074)
55 KOG0250 DNA repair protein RAD 96.0 6.8 0.00015 49.0 32.1 136 493-674 321-459 (1074)
56 PF13851 GAS: Growth-arrest sp 95.7 2.8 6.1E-05 42.9 25.2 107 304-435 9-115 (201)
57 KOG4807 F-actin binding protei 95.5 1.6 3.5E-05 49.5 20.0 186 342-607 348-538 (593)
58 PF05010 TACC: Transforming ac 95.5 3.8 8.3E-05 42.6 23.6 168 355-534 25-200 (207)
59 PRK11637 AmiB activator; Provi 95.4 5.7 0.00012 44.1 27.2 54 507-560 192-245 (428)
60 PRK09039 hypothetical protein; 95.3 0.15 3.2E-06 55.6 11.3 142 500-671 44-185 (343)
61 KOG0977 Nuclear envelope prote 95.1 9.2 0.0002 45.0 27.7 206 345-564 154-372 (546)
62 PF04849 HAP1_N: HAP1 N-termin 94.9 7.3 0.00016 42.9 24.4 232 114-387 59-303 (306)
63 KOG0977 Nuclear envelope prote 94.9 11 0.00023 44.5 30.1 194 462-677 168-375 (546)
64 COG1579 Zn-ribbon protein, pos 94.8 0.35 7.6E-06 51.1 12.0 71 611-681 12-82 (239)
65 TIGR03185 DNA_S_dndD DNA sulfu 94.7 11 0.00025 44.1 35.8 47 346-392 421-467 (650)
66 PRK11637 AmiB activator; Provi 94.6 9.2 0.0002 42.5 27.0 76 347-422 48-126 (428)
67 PF10473 CENP-F_leu_zip: Leuci 94.5 5.2 0.00011 39.6 18.4 136 283-443 3-138 (140)
68 PF04849 HAP1_N: HAP1 N-termin 94.5 9.4 0.0002 42.1 22.3 229 191-490 66-303 (306)
69 KOG0962 DNA repair protein RAD 94.3 22 0.00047 45.6 35.7 197 361-560 169-365 (1294)
70 KOG1029 Endocytic adaptor prot 93.9 21 0.00046 43.9 33.5 79 468-550 435-516 (1118)
71 PF05667 DUF812: Protein of un 93.6 20 0.00042 42.6 28.2 176 275-458 327-539 (594)
72 KOG0996 Structural maintenance 93.6 28 0.00061 44.4 52.7 108 574-681 928-1042(1293)
73 KOG4643 Uncharacterized coiled 93.6 27 0.00058 44.0 45.8 79 587-665 480-558 (1195)
74 PRK04863 mukB cell division pr 93.5 33 0.00072 44.8 40.8 41 133-173 295-335 (1486)
75 PF09789 DUF2353: Uncharacteri 93.2 12 0.00026 41.5 20.1 70 353-423 140-213 (319)
76 COG1340 Uncharacterized archae 93.0 17 0.00037 40.0 27.7 162 277-443 56-233 (294)
77 COG4942 Membrane-bound metallo 92.8 22 0.00048 40.8 27.0 86 349-452 41-126 (420)
78 KOG0980 Actin-binding protein 92.8 33 0.00071 42.7 35.5 63 108-173 331-393 (980)
79 PF14662 CCDC155: Coiled-coil 92.7 14 0.00031 38.5 20.8 100 435-560 19-121 (193)
80 PF05667 DUF812: Protein of un 92.6 9.8 0.00021 45.0 19.6 74 614-687 410-483 (594)
81 KOG0018 Structural maintenance 92.5 39 0.00083 42.9 33.4 140 433-614 809-948 (1141)
82 PF05483 SCP-1: Synaptonemal c 92.4 33 0.00071 41.8 56.1 46 339-384 233-278 (786)
83 PF00261 Tropomyosin: Tropomyo 92.2 16 0.00035 37.9 25.8 58 433-494 171-228 (237)
84 KOG0971 Microtubule-associated 92.2 39 0.00085 42.3 41.2 31 641-671 567-597 (1243)
85 KOG0971 Microtubule-associated 92.1 40 0.00087 42.3 31.3 273 345-667 223-506 (1243)
86 COG1579 Zn-ribbon protein, pos 91.4 15 0.00032 39.3 17.5 74 589-662 90-163 (239)
87 KOG0612 Rho-associated, coiled 91.1 56 0.0012 42.0 51.8 154 316-480 652-814 (1317)
88 KOG1029 Endocytic adaptor prot 91.1 48 0.001 41.1 33.8 107 296-402 485-591 (1118)
89 smart00787 Spc7 Spc7 kinetocho 91.0 19 0.00042 39.4 18.4 135 291-446 152-286 (312)
90 PF12718 Tropomyosin_1: Tropom 90.9 16 0.00035 35.8 16.0 114 279-397 17-131 (143)
91 KOG0946 ER-Golgi vesicle-tethe 90.7 53 0.0011 40.8 28.1 45 518-562 839-883 (970)
92 PF08614 ATG16: Autophagy prot 89.9 2.6 5.6E-05 42.3 10.1 96 219-318 14-109 (194)
93 PF09730 BicD: Microtubule-ass 89.8 57 0.0012 39.9 37.7 145 353-509 265-412 (717)
94 PF15070 GOLGA2L5: Putative go 89.8 52 0.0011 39.4 41.4 220 110-374 15-237 (617)
95 PF09726 Macoilin: Transmembra 89.6 57 0.0012 39.6 29.3 41 278-318 540-580 (697)
96 KOG0978 E3 ubiquitin ligase in 89.2 62 0.0013 39.5 51.4 54 624-677 567-620 (698)
97 PF06818 Fez1: Fez1; InterPro 89.1 18 0.00038 38.0 15.4 132 240-404 7-168 (202)
98 KOG0946 ER-Golgi vesicle-tethe 88.8 72 0.0016 39.7 26.9 64 421-491 709-772 (970)
99 PRK04863 mukB cell division pr 88.8 92 0.002 41.0 44.0 53 508-560 553-605 (1486)
100 TIGR01005 eps_transp_fam exopo 88.8 47 0.001 39.5 20.7 51 346-396 288-338 (754)
101 PF09755 DUF2046: Uncharacteri 88.7 45 0.00096 37.2 32.9 31 108-138 18-48 (310)
102 PF09730 BicD: Microtubule-ass 88.5 69 0.0015 39.2 35.7 99 533-646 358-463 (717)
103 PRK04778 septation ring format 88.3 58 0.0013 38.0 42.4 114 359-478 255-370 (569)
104 PF15619 Lebercilin: Ciliary p 86.8 41 0.0009 34.7 21.4 135 149-310 16-152 (194)
105 PF14662 CCDC155: Coiled-coil 86.6 45 0.00099 35.0 22.2 166 301-479 5-188 (193)
106 TIGR03017 EpsF chain length de 86.5 56 0.0012 36.0 18.5 58 345-402 253-310 (444)
107 PF04012 PspA_IM30: PspA/IM30 86.5 33 0.00071 34.7 15.4 140 215-363 37-182 (221)
108 PF07926 TPR_MLP1_2: TPR/MLP1/ 86.3 32 0.00069 32.9 16.3 92 284-382 4-95 (132)
109 PF09787 Golgin_A5: Golgin sub 85.8 75 0.0016 36.8 35.0 89 430-527 336-424 (511)
110 PF12325 TMF_TATA_bd: TATA ele 85.8 33 0.00072 33.2 14.2 104 275-396 15-118 (120)
111 PF05911 DUF869: Plant protein 85.2 31 0.00067 42.3 16.8 29 359-387 732-760 (769)
112 PF02183 HALZ: Homeobox associ 84.6 2.7 6E-05 34.3 5.5 43 628-670 3-45 (45)
113 PF12718 Tropomyosin_1: Tropom 83.9 46 0.001 32.7 15.9 82 291-393 8-92 (143)
114 PF09738 DUF2051: Double stran 83.9 13 0.00028 40.8 11.9 84 464-551 78-164 (302)
115 PF12795 MscS_porin: Mechanose 83.7 58 0.0013 33.7 18.8 147 392-559 24-175 (240)
116 PF09755 DUF2046: Uncharacteri 83.6 80 0.0017 35.3 30.7 211 279-554 23-242 (310)
117 PF12325 TMF_TATA_bd: TATA ele 83.1 18 0.0004 34.9 11.3 99 103-208 9-110 (120)
118 KOG2129 Uncharacterized conser 83.1 1E+02 0.0022 36.1 22.7 222 105-328 37-302 (552)
119 KOG4809 Rab6 GTPase-interactin 82.3 1.2E+02 0.0026 36.4 36.0 395 134-636 112-604 (654)
120 PF08317 Spc7: Spc7 kinetochor 82.1 82 0.0018 34.3 26.3 214 216-446 69-291 (325)
121 KOG0994 Extracellular matrix g 81.9 1.8E+02 0.0038 38.0 38.8 35 152-186 1267-1302(1758)
122 KOG0933 Structural maintenance 81.2 1.7E+02 0.0038 37.4 55.7 252 421-721 725-986 (1174)
123 TIGR00634 recN DNA repair prot 81.1 1.2E+02 0.0025 35.4 24.9 191 282-488 167-371 (563)
124 PF11559 ADIP: Afadin- and alp 81.1 54 0.0012 31.6 15.1 92 284-382 39-130 (151)
125 PF09728 Taxilin: Myosin-like 80.6 95 0.0021 34.1 33.9 96 272-377 18-120 (309)
126 PF15066 CAGE1: Cancer-associa 80.6 1E+02 0.0022 36.3 17.7 109 536-677 357-465 (527)
127 PF08614 ATG16: Autophagy prot 79.5 16 0.00036 36.7 10.1 72 594-665 115-186 (194)
128 KOG0964 Structural maintenance 78.6 2.1E+02 0.0045 36.8 34.4 214 291-518 224-455 (1200)
129 PF15397 DUF4618: Domain of un 77.9 1.1E+02 0.0024 33.3 27.8 187 409-650 44-234 (258)
130 PF07926 TPR_MLP1_2: TPR/MLP1/ 77.2 70 0.0015 30.6 15.0 68 496-563 60-127 (132)
131 COG4026 Uncharacterized protei 77.2 20 0.00042 38.7 10.1 91 291-395 129-219 (290)
132 PF14197 Cep57_CLD_2: Centroso 77.1 16 0.00034 32.3 8.0 63 110-172 5-67 (69)
133 PF15619 Lebercilin: Ciliary p 76.9 96 0.0021 32.1 22.5 61 428-488 115-175 (194)
134 COG5185 HEC1 Protein involved 76.8 1.3E+02 0.0028 35.7 17.0 165 455-675 263-427 (622)
135 KOG4593 Mitotic checkpoint pro 76.6 2E+02 0.0043 35.5 39.0 157 295-480 78-234 (716)
136 PF09738 DUF2051: Double stran 76.6 8.7 0.00019 42.1 7.7 37 210-246 214-250 (302)
137 PF04156 IncA: IncA protein; 76.5 82 0.0018 31.1 14.5 62 346-407 81-145 (191)
138 COG1340 Uncharacterized archae 76.2 1.3E+02 0.0029 33.4 29.8 46 268-313 143-188 (294)
139 PF07200 Mod_r: Modifier of ru 76.2 75 0.0016 30.5 13.7 85 308-400 38-122 (150)
140 PF06005 DUF904: Protein of un 75.6 31 0.00068 30.7 9.5 48 277-324 5-52 (72)
141 PF10473 CENP-F_leu_zip: Leuci 73.6 1E+02 0.0022 30.8 16.2 34 291-324 46-86 (140)
142 PRK04778 septation ring format 73.1 2E+02 0.0043 33.8 44.9 127 368-502 99-237 (569)
143 KOG1899 LAR transmembrane tyro 72.8 2.4E+02 0.0052 34.7 19.5 132 375-516 168-318 (861)
144 PF08317 Spc7: Spc7 kinetochor 72.5 1.5E+02 0.0033 32.3 22.2 78 623-701 209-286 (325)
145 TIGR03007 pepcterm_ChnLen poly 72.2 1.8E+02 0.0038 32.9 19.4 134 229-395 161-296 (498)
146 PF07106 TBPIP: Tat binding pr 72.1 37 0.0008 33.4 10.1 88 583-670 74-164 (169)
147 PF11559 ADIP: Afadin- and alp 72.0 66 0.0014 31.0 11.6 96 586-681 50-149 (151)
148 PF10234 Cluap1: Clusterin-ass 72.0 68 0.0015 35.0 12.8 90 278-388 171-260 (267)
149 PF05010 TACC: Transforming ac 70.8 1.5E+02 0.0032 31.4 24.3 80 419-516 113-196 (207)
150 PF04156 IncA: IncA protein; 70.2 1.2E+02 0.0025 30.0 14.2 13 281-293 86-98 (191)
151 PF13166 AAA_13: AAA domain 70.1 2.3E+02 0.005 33.4 21.1 106 577-684 366-471 (712)
152 PF14915 CCDC144C: CCDC144C pr 69.3 2E+02 0.0043 32.3 30.1 93 268-363 23-120 (305)
153 PF05911 DUF869: Plant protein 67.8 3.2E+02 0.0068 34.1 25.9 132 279-452 627-761 (769)
154 KOG0239 Kinesin (KAR3 subfamil 67.7 1.7E+02 0.0036 35.7 16.0 74 466-551 244-317 (670)
155 PF05266 DUF724: Protein of un 67.1 33 0.00071 35.3 8.9 65 584-648 120-184 (190)
156 PF13870 DUF4201: Domain of un 66.8 1.4E+02 0.003 29.6 17.4 66 461-531 4-71 (177)
157 KOG4460 Nuclear pore complex, 66.5 1.6E+02 0.0036 35.5 15.1 136 277-447 589-725 (741)
158 KOG0962 DNA repair protein RAD 65.9 4.3E+02 0.0092 34.9 57.5 46 758-805 1009-1054(1294)
159 KOG0249 LAR-interacting protei 65.7 2.6E+02 0.0057 34.9 16.8 192 444-675 65-268 (916)
160 KOG0963 Transcription factor/C 65.6 3.2E+02 0.0069 33.4 27.6 48 470-520 256-303 (629)
161 PF04949 Transcrip_act: Transc 65.6 73 0.0016 32.6 10.6 103 225-329 30-137 (159)
162 PF00769 ERM: Ezrin/radixin/mo 65.4 1.9E+02 0.0042 30.7 16.5 116 349-486 8-126 (246)
163 PRK10884 SH3 domain-containing 65.2 50 0.0011 34.5 9.8 46 465-510 88-133 (206)
164 PF10146 zf-C4H2: Zinc finger- 64.6 1.5E+02 0.0032 31.7 13.3 48 584-645 56-103 (230)
165 PRK12704 phosphodiesterase; Pr 63.0 3.1E+02 0.0068 32.3 17.3 30 496-525 83-112 (520)
166 PF09787 Golgin_A5: Golgin sub 62.2 3.1E+02 0.0066 32.0 32.3 41 436-480 390-430 (511)
167 PF13870 DUF4201: Domain of un 62.1 74 0.0016 31.5 10.0 126 421-564 7-135 (177)
168 KOG4673 Transcription factor T 62.0 4E+02 0.0087 33.3 40.3 305 354-675 454-783 (961)
169 PRK14127 cell division protein 61.7 39 0.00085 32.4 7.7 73 298-384 24-102 (109)
170 PF07106 TBPIP: Tat binding pr 61.6 47 0.001 32.6 8.6 66 108-173 70-137 (169)
171 PRK10361 DNA recombination pro 61.0 3.4E+02 0.0074 32.1 19.6 98 494-620 98-198 (475)
172 PRK00106 hypothetical protein; 59.8 3.7E+02 0.008 32.1 20.9 27 441-467 20-46 (535)
173 PRK11020 hypothetical protein; 59.7 17 0.00036 35.5 4.9 55 497-564 7-62 (118)
174 PF15294 Leu_zip: Leucine zipp 59.6 57 0.0012 35.9 9.4 26 587-612 189-214 (278)
175 PF00170 bZIP_1: bZIP transcri 59.5 28 0.00062 29.3 5.8 23 298-320 41-63 (64)
176 PF04111 APG6: Autophagy prote 59.5 80 0.0017 34.6 10.6 38 633-670 95-132 (314)
177 PF06008 Laminin_I: Laminin Do 59.4 2.4E+02 0.0051 29.7 24.9 198 342-545 13-245 (264)
178 PF10046 BLOC1_2: Biogenesis o 59.1 1.5E+02 0.0032 27.5 10.7 18 343-360 63-80 (99)
179 PRK06568 F0F1 ATP synthase sub 59.0 2.1E+02 0.0045 28.9 15.0 54 384-453 84-137 (154)
180 PF12329 TMF_DNA_bd: TATA elem 58.9 58 0.0013 28.9 7.8 64 619-682 8-71 (74)
181 KOG0980 Actin-binding protein 58.7 4.9E+02 0.011 33.2 23.1 116 435-562 330-445 (980)
182 smart00787 Spc7 Spc7 kinetocho 58.7 2.9E+02 0.0063 30.6 18.1 77 624-701 205-281 (312)
183 PF10481 CENP-F_N: Cenp-F N-te 58.1 1.3E+02 0.0028 33.5 11.6 128 540-686 17-144 (307)
184 TIGR01000 bacteriocin_acc bact 56.9 3.4E+02 0.0073 30.8 18.2 24 652-675 292-315 (457)
185 TIGR03007 pepcterm_ChnLen poly 56.7 3.4E+02 0.0073 30.7 21.2 55 588-646 324-378 (498)
186 PF07798 DUF1640: Protein of u 56.2 2.2E+02 0.0048 28.5 12.3 98 129-246 56-155 (177)
187 PRK11546 zraP zinc resistance 55.9 38 0.00083 33.9 6.8 65 484-559 50-114 (143)
188 PF06160 EzrA: Septation ring 55.5 4.1E+02 0.009 31.4 44.9 252 367-652 94-373 (560)
189 KOG0804 Cytoplasmic Zn-finger 55.3 3.8E+02 0.0082 31.8 15.2 27 501-529 327-353 (493)
190 PF10267 Tmemb_cc2: Predicted 54.4 2.1E+02 0.0045 33.0 13.0 62 104-171 206-267 (395)
191 PF12329 TMF_DNA_bd: TATA elem 54.3 1.1E+02 0.0025 27.1 8.8 51 342-392 1-51 (74)
192 PLN02939 transferase, transfer 53.5 6.1E+02 0.013 32.7 22.4 46 129-174 199-248 (977)
193 KOG4438 Centromere-associated 53.0 4.5E+02 0.0097 31.0 16.9 189 476-676 127-358 (446)
194 COG2433 Uncharacterized conser 53.0 1.9E+02 0.0041 35.2 12.8 84 75-173 265-356 (652)
195 PLN03188 kinesin-12 family pro 52.8 5.7E+02 0.012 33.9 17.4 108 112-222 1067-1194(1320)
196 PF10481 CENP-F_N: Cenp-F N-te 51.9 3.4E+02 0.0073 30.5 13.5 95 283-391 18-126 (307)
197 PRK10884 SH3 domain-containing 51.9 57 0.0012 34.0 7.7 55 68-123 50-106 (206)
198 PF04645 DUF603: Protein of un 51.1 32 0.0007 35.7 5.6 51 121-173 109-159 (181)
199 KOG0239 Kinesin (KAR3 subfamil 50.9 5.5E+02 0.012 31.5 19.6 38 627-668 280-317 (670)
200 smart00338 BRLZ basic region l 50.7 43 0.00094 28.2 5.5 37 284-320 27-63 (65)
201 PF11932 DUF3450: Protein of u 50.6 1.6E+02 0.0034 30.8 10.7 83 601-683 34-116 (251)
202 PF15397 DUF4618: Domain of un 50.1 3.8E+02 0.0083 29.4 26.8 89 306-415 8-97 (258)
203 KOG0244 Kinesin-like protein [ 50.0 2E+02 0.0042 36.4 12.7 160 496-678 475-638 (913)
204 PF10212 TTKRSYEDQ: Predicted 49.4 3.3E+02 0.0071 32.6 13.9 91 297-397 420-510 (518)
205 PRK09841 cryptic autophosphory 48.3 5.8E+02 0.013 31.0 17.4 100 280-391 257-356 (726)
206 PLN03229 acetyl-coenzyme A car 48.2 6.1E+02 0.013 31.8 16.1 194 101-308 450-706 (762)
207 PF03962 Mnd1: Mnd1 family; I 47.9 2.3E+02 0.005 29.1 11.1 87 587-677 68-154 (188)
208 PRK11519 tyrosine kinase; Prov 47.9 5.9E+02 0.013 30.9 17.7 100 281-392 258-357 (719)
209 COG2433 Uncharacterized conser 47.3 2.5E+02 0.0055 34.2 12.6 103 347-467 423-538 (652)
210 TIGR03319 YmdA_YtgF conserved 46.7 2.8E+02 0.0061 32.7 12.9 25 501-525 89-113 (514)
211 KOG0982 Centrosomal protein Nu 46.4 5.7E+02 0.012 30.4 26.1 160 210-408 299-465 (502)
212 PF03954 Lectin_N: Hepatic lec 46.3 1.1E+02 0.0023 30.9 8.1 80 345-449 47-137 (138)
213 PF03148 Tektin: Tektin family 45.7 4.9E+02 0.011 29.4 29.2 307 366-783 38-350 (384)
214 TIGR03319 YmdA_YtgF conserved 45.6 5.8E+02 0.013 30.2 17.3 37 494-530 75-111 (514)
215 PF10168 Nup88: Nuclear pore c 45.4 6.8E+02 0.015 30.9 20.4 42 516-557 621-662 (717)
216 PF05529 Bap31: B-cell recepto 45.2 1.1E+02 0.0023 30.7 8.2 36 631-666 155-190 (192)
217 PF05483 SCP-1: Synaptonemal c 45.0 7.2E+02 0.016 31.1 60.3 191 353-545 471-665 (786)
218 PF15294 Leu_zip: Leucine zipp 44.8 2.8E+02 0.006 30.7 11.7 44 289-332 131-174 (278)
219 PF02403 Seryl_tRNA_N: Seryl-t 44.4 76 0.0017 28.9 6.5 57 625-681 38-97 (108)
220 COG4942 Membrane-bound metallo 44.3 5.9E+02 0.013 29.9 28.6 89 304-406 38-126 (420)
221 KOG1853 LIS1-interacting prote 44.2 5E+02 0.011 29.0 14.8 105 495-604 52-156 (333)
222 PF02841 GBP_C: Guanylate-bind 44.0 4.4E+02 0.0096 28.3 29.6 146 396-554 149-297 (297)
223 PF03962 Mnd1: Mnd1 family; I 43.6 3.8E+02 0.0083 27.5 12.0 52 510-561 111-162 (188)
224 PF09728 Taxilin: Myosin-like 43.1 5E+02 0.011 28.7 35.6 50 623-672 251-300 (309)
225 PF06005 DUF904: Protein of un 42.5 1.1E+02 0.0023 27.5 6.8 49 624-679 19-67 (72)
226 KOG0993 Rab5 GTPase effector R 42.1 6.6E+02 0.014 29.8 23.5 200 356-619 295-503 (542)
227 cd07598 BAR_FAM92 The Bin/Amph 41.7 4.4E+02 0.0095 27.7 18.9 91 276-377 11-103 (211)
228 KOG0018 Structural maintenance 41.6 9.4E+02 0.02 31.5 35.5 46 757-806 652-697 (1141)
229 PF01920 Prefoldin_2: Prefoldi 40.7 2.6E+02 0.0056 24.7 9.8 41 383-423 60-100 (106)
230 PRK10361 DNA recombination pro 40.3 7E+02 0.015 29.6 22.0 49 754-805 377-425 (475)
231 TIGR02977 phageshock_pspA phag 40.1 4.4E+02 0.0096 27.3 18.7 139 216-361 39-181 (219)
232 PF04582 Reo_sigmaC: Reovirus 40.0 47 0.001 37.2 5.2 97 570-673 59-155 (326)
233 PRK12704 phosphodiesterase; Pr 39.1 4.3E+02 0.0094 31.2 12.9 36 496-531 90-125 (520)
234 PF12709 Kinetocho_Slk19: Cent 39.1 3.4E+02 0.0073 25.6 10.8 70 379-460 2-71 (87)
235 PF12761 End3: Actin cytoskele 38.8 1.7E+02 0.0037 30.9 8.6 94 542-658 97-195 (195)
236 KOG0804 Cytoplasmic Zn-finger 38.4 7.6E+02 0.016 29.5 14.7 95 338-450 360-454 (493)
237 PF00769 ERM: Ezrin/radixin/mo 38.1 5.3E+02 0.011 27.5 16.7 93 296-409 4-99 (246)
238 PF09304 Cortex-I_coil: Cortex 38.0 3.9E+02 0.0085 26.1 12.9 88 279-381 12-100 (107)
239 PF01166 TSC22: TSC-22/dip/bun 38.0 49 0.0011 29.1 3.9 29 290-318 14-42 (59)
240 KOG0982 Centrosomal protein Nu 38.0 7.6E+02 0.017 29.4 19.8 165 350-550 219-390 (502)
241 PF07028 DUF1319: Protein of u 37.8 3.1E+02 0.0067 27.4 9.7 66 337-402 47-120 (126)
242 COG3074 Uncharacterized protei 37.5 1.7E+02 0.0036 27.0 7.2 57 110-173 4-60 (79)
243 PF04012 PspA_IM30: PspA/IM30 37.4 4.6E+02 0.01 26.7 20.1 40 752-791 160-202 (221)
244 TIGR01069 mutS2 MutS2 family p 37.3 5.1E+02 0.011 32.0 13.6 24 590-613 567-590 (771)
245 TIGR02449 conserved hypothetic 37.1 2.2E+02 0.0047 25.4 7.8 57 300-363 3-59 (65)
246 PRK00409 recombination and DNA 37.0 5.8E+02 0.013 31.6 14.0 25 590-614 572-596 (782)
247 PF06548 Kinesin-related: Kine 36.9 8E+02 0.017 29.3 18.2 123 111-236 296-441 (488)
248 PF12795 MscS_porin: Mechanose 36.2 4.4E+02 0.0094 27.5 11.2 116 534-650 45-177 (240)
249 PF13851 GAS: Growth-arrest sp 36.1 5.2E+02 0.011 26.9 21.4 165 428-633 18-188 (201)
250 PF06156 DUF972: Protein of un 35.3 1.2E+02 0.0025 29.0 6.3 48 277-331 9-56 (107)
251 PRK11281 hypothetical protein; 35.2 1.2E+03 0.025 30.6 25.0 145 393-557 67-215 (1113)
252 PF09304 Cortex-I_coil: Cortex 34.5 4.5E+02 0.0097 25.7 10.8 89 590-678 11-99 (107)
253 KOG2751 Beclin-like protein [S 33.9 6.3E+02 0.014 29.9 12.7 91 288-385 155-250 (447)
254 PF02403 Seryl_tRNA_N: Seryl-t 33.9 1.9E+02 0.0042 26.3 7.4 57 431-488 43-99 (108)
255 KOG0976 Rho/Rac1-interacting s 33.8 1.1E+03 0.025 30.2 51.1 32 297-328 176-207 (1265)
256 PF08581 Tup_N: Tup N-terminal 33.8 2.4E+02 0.0053 25.8 7.8 67 434-507 7-76 (79)
257 PF11932 DUF3450: Protein of u 33.5 5E+02 0.011 27.2 11.2 58 532-601 40-97 (251)
258 KOG4360 Uncharacterized coiled 33.4 2.2E+02 0.0048 34.1 9.3 155 431-621 154-308 (596)
259 PF05377 FlaC_arch: Flagella a 33.3 1.4E+02 0.003 26.0 5.9 40 348-387 2-41 (55)
260 PRK10698 phage shock protein P 33.0 6E+02 0.013 26.7 18.8 125 231-364 54-184 (222)
261 TIGR01010 BexC_CtrB_KpsE polys 32.9 6.8E+02 0.015 27.3 18.5 128 257-400 141-268 (362)
262 PF14992 TMCO5: TMCO5 family 32.9 7.4E+02 0.016 27.7 13.1 41 209-249 5-45 (280)
263 PRK15178 Vi polysaccharide exp 32.6 8.8E+02 0.019 28.5 13.8 92 296-399 248-339 (434)
264 TIGR01069 mutS2 MutS2 family p 32.5 1E+03 0.023 29.5 15.1 84 349-442 507-590 (771)
265 PF04645 DUF603: Protein of un 32.3 1.4E+02 0.003 31.2 6.7 62 276-355 112-179 (181)
266 PF01442 Apolipoprotein: Apoli 32.3 4.3E+02 0.0094 24.8 22.4 25 349-373 8-32 (202)
267 PF02994 Transposase_22: L1 tr 32.2 96 0.0021 34.7 6.1 41 276-316 144-184 (370)
268 KOG0994 Extracellular matrix g 32.2 1.4E+03 0.03 30.7 31.2 19 108-126 1223-1241(1758)
269 PF00804 Syntaxin: Syntaxin; 31.7 3.4E+02 0.0073 23.4 10.3 93 462-556 6-98 (103)
270 COG4026 Uncharacterized protei 31.3 1.8E+02 0.0039 31.8 7.6 74 281-361 140-213 (290)
271 COG3883 Uncharacterized protei 31.2 7.6E+02 0.017 27.3 21.0 43 276-318 52-94 (265)
272 PRK15422 septal ring assembly 31.0 2.1E+02 0.0045 26.7 6.9 62 444-505 2-77 (79)
273 TIGR02449 conserved hypothetic 31.0 2.2E+02 0.0048 25.4 6.8 53 277-329 1-53 (65)
274 PF14992 TMCO5: TMCO5 family 30.3 6.9E+02 0.015 27.9 11.9 105 498-602 21-137 (280)
275 KOG2391 Vacuolar sorting prote 30.2 1.7E+02 0.0037 33.4 7.4 63 108-184 223-285 (365)
276 PF09006 Surfac_D-trimer: Lung 30.2 86 0.0019 26.5 4.0 26 348-373 1-26 (46)
277 PF00804 Syntaxin: Syntaxin; 30.2 3.6E+02 0.0078 23.2 10.0 64 346-409 7-73 (103)
278 PF14389 Lzipper-MIP1: Leucine 30.1 3.3E+02 0.0072 25.0 8.2 73 654-779 11-83 (88)
279 PF05529 Bap31: B-cell recepto 29.8 1.9E+02 0.0041 29.0 7.2 37 278-314 156-192 (192)
280 PF04728 LPP: Lipoprotein leuc 29.7 2.8E+02 0.0061 24.3 7.1 26 535-560 4-29 (56)
281 PF09325 Vps5: Vps5 C terminal 29.6 5.9E+02 0.013 25.6 17.8 53 289-352 23-75 (236)
282 PF14915 CCDC144C: CCDC144C pr 29.4 8.8E+02 0.019 27.5 31.0 128 381-508 13-150 (305)
283 PF04100 Vps53_N: Vps53-like, 29.2 8.9E+02 0.019 27.5 15.3 151 231-405 20-185 (383)
284 COG4717 Uncharacterized conser 29.1 1.4E+03 0.03 29.6 27.1 251 109-389 584-854 (984)
285 PF06810 Phage_GP20: Phage min 29.1 4.8E+02 0.01 26.2 9.7 54 349-406 30-83 (155)
286 PF05791 Bacillus_HBL: Bacillu 29.1 3.4E+02 0.0073 27.6 8.8 73 587-669 109-181 (184)
287 PF06428 Sec2p: GDP/GTP exchan 28.7 89 0.0019 29.6 4.4 73 535-639 9-81 (100)
288 KOG0979 Structural maintenance 28.4 1.5E+03 0.032 29.7 25.0 327 45-394 555-911 (1072)
289 PLN02939 transferase, transfer 28.1 1.4E+03 0.031 29.6 27.0 45 432-484 301-345 (977)
290 KOG4196 bZIP transcription fac 27.8 1.4E+02 0.0029 30.1 5.6 25 149-173 92-116 (135)
291 PF10146 zf-C4H2: Zinc finger- 27.4 8E+02 0.017 26.3 13.8 35 358-392 65-99 (230)
292 PF10205 KLRAQ: Predicted coil 27.3 2.7E+02 0.0059 26.8 7.3 51 627-677 2-52 (102)
293 PHA01750 hypothetical protein 27.3 1.7E+02 0.0037 26.6 5.6 36 627-669 39-74 (75)
294 PF06705 SF-assemblin: SF-asse 27.0 7.5E+02 0.016 25.9 30.9 66 429-494 148-214 (247)
295 TIGR01005 eps_transp_fam exopo 26.9 1.2E+03 0.026 28.2 23.6 29 620-648 373-401 (754)
296 PRK10929 putative mechanosensi 26.7 1.6E+03 0.034 29.6 33.6 19 431-449 215-233 (1109)
297 PRK10869 recombination and rep 26.6 1.1E+03 0.025 27.9 24.6 81 360-448 254-334 (553)
298 TIGR02680 conserved hypothetic 26.3 1.6E+03 0.035 29.6 29.0 24 514-537 457-480 (1353)
299 PF02183 HALZ: Homeobox associ 26.3 1.3E+02 0.0029 24.7 4.5 31 298-328 6-36 (45)
300 PF10186 Atg14: UV radiation r 26.0 7.4E+02 0.016 25.5 17.8 28 284-311 21-48 (302)
301 TIGR02894 DNA_bind_RsfA transc 25.6 4.9E+02 0.011 27.0 9.2 66 336-405 80-145 (161)
302 PF14817 HAUS5: HAUS augmin-li 25.5 1E+03 0.022 29.3 13.2 130 99-228 292-437 (632)
303 PF04642 DUF601: Protein of un 25.4 3.3E+02 0.0072 30.3 8.4 46 284-329 187-242 (311)
304 PRK13169 DNA replication intia 25.4 2.2E+02 0.0047 27.5 6.4 47 277-330 9-55 (110)
305 PF14282 FlxA: FlxA-like prote 25.2 3.8E+02 0.0083 25.2 7.8 50 594-643 18-71 (106)
306 PF15035 Rootletin: Ciliary ro 25.2 7.2E+02 0.016 25.7 10.4 24 339-362 16-39 (182)
307 PF10498 IFT57: Intra-flagella 24.7 4.4E+02 0.0096 29.9 9.6 126 465-614 222-347 (359)
308 PF02346 Vac_Fusion: Chordopox 24.6 3.1E+02 0.0068 24.0 6.5 43 348-390 3-45 (57)
309 KOG0240 Kinesin (SMY1 subfamil 24.6 1.4E+03 0.03 28.2 17.7 49 370-425 495-543 (607)
310 cd00632 Prefoldin_beta Prefold 24.5 5.6E+02 0.012 23.6 10.6 44 272-315 59-102 (105)
311 PF04977 DivIC: Septum formati 24.5 1.6E+02 0.0034 24.8 4.8 39 276-314 17-55 (80)
312 PRK11546 zraP zinc resistance 24.3 5.1E+02 0.011 26.3 8.9 57 590-646 56-112 (143)
313 PF06160 EzrA: Septation ring 23.9 1.3E+03 0.027 27.5 40.7 55 421-487 314-368 (560)
314 TIGR00414 serS seryl-tRNA synt 23.6 3.4E+02 0.0074 31.0 8.5 67 422-488 35-101 (418)
315 PRK08476 F0F1 ATP synthase sub 23.5 6.9E+02 0.015 24.3 13.7 44 385-428 31-74 (141)
316 PF14931 IFT20: Intraflagellar 23.3 5.8E+02 0.013 24.9 8.9 88 475-562 14-108 (120)
317 KOG1962 B-cell receptor-associ 23.1 1.9E+02 0.004 31.0 5.9 50 279-328 161-210 (216)
318 PRK09841 cryptic autophosphory 22.9 1.4E+03 0.031 27.8 14.6 24 620-643 367-390 (726)
319 PF02050 FliJ: Flagellar FliJ 22.7 5.1E+02 0.011 22.5 10.2 41 632-672 47-87 (123)
320 PF04201 TPD52: Tumour protein 22.6 2.3E+02 0.0049 29.3 6.2 41 108-155 27-67 (162)
321 COG3937 Uncharacterized conser 22.3 4.9E+02 0.011 25.5 8.0 42 302-363 66-107 (108)
322 KOG4687 Uncharacterized coiled 22.3 1.2E+03 0.026 26.6 17.6 179 288-490 35-245 (389)
323 COG4487 Uncharacterized protei 22.3 1.4E+03 0.029 27.2 20.8 129 374-521 64-201 (438)
324 PF02994 Transposase_22: L1 tr 22.2 2.6E+02 0.0056 31.4 7.2 18 301-318 102-119 (370)
325 PF14197 Cep57_CLD_2: Centroso 22.1 4.2E+02 0.0091 23.6 7.0 19 347-365 48-66 (69)
326 PF02050 FliJ: Flagellar FliJ 22.0 5.3E+02 0.011 22.4 15.0 65 339-403 52-120 (123)
327 PF03194 LUC7: LUC7 N_terminus 22.0 6.8E+02 0.015 27.0 9.9 71 412-482 96-175 (254)
328 PF05103 DivIVA: DivIVA protei 21.7 1.2E+02 0.0026 28.0 3.8 93 533-644 24-121 (131)
329 PF10267 Tmemb_cc2: Predicted 21.5 1.3E+03 0.028 26.8 13.5 54 346-402 251-304 (395)
330 PF06785 UPF0242: Uncharacteri 21.3 1.3E+03 0.029 26.8 14.6 130 277-424 69-198 (401)
331 PF04508 Pox_A_type_inc: Viral 21.3 99 0.0021 22.9 2.5 21 277-297 2-22 (23)
332 PF14282 FlxA: FlxA-like prote 21.2 5.3E+02 0.012 24.2 7.9 59 298-366 20-78 (106)
333 KOG1853 LIS1-interacting prote 21.2 1.2E+03 0.026 26.2 19.6 159 409-612 23-181 (333)
334 PF06657 Cep57_MT_bd: Centroso 21.0 2.6E+02 0.0056 25.3 5.6 57 474-531 14-79 (79)
335 PF09744 Jnk-SapK_ap_N: JNK_SA 20.9 9E+02 0.02 24.6 16.7 97 266-367 13-117 (158)
336 KOG1937 Uncharacterized conser 20.5 1.5E+03 0.033 27.2 22.1 124 202-327 360-518 (521)
337 TIGR02338 gimC_beta prefoldin, 20.5 7E+02 0.015 23.2 10.1 44 272-315 63-106 (110)
338 KOG4001 Axonemal dynein light 20.4 4.3E+02 0.0094 28.7 7.9 60 290-356 192-252 (259)
339 PRK13729 conjugal transfer pil 20.3 1.8E+02 0.0039 34.3 5.6 48 585-639 73-120 (475)
340 TIGR01843 type_I_hlyD type I s 20.2 1.1E+03 0.024 25.4 21.6 21 536-556 248-268 (423)
341 PF04977 DivIC: Septum formati 20.2 2.9E+02 0.0063 23.2 5.6 26 148-173 27-52 (80)
342 TIGR01837 PHA_granule_1 poly(h 20.2 6.2E+02 0.013 24.3 8.3 20 541-560 96-115 (118)
343 PF00170 bZIP_1: bZIP transcri 20.0 3.9E+02 0.0085 22.5 6.2 36 354-389 27-62 (64)
No 1
>KOG0161 consensus Myosin class II heavy chain [Cytoskeleton]
Probab=99.51 E-value=8e-08 Score=119.91 Aligned_cols=406 Identities=20% Similarity=0.256 Sum_probs=222.1
Q ss_pred hhHHHHHHHHHHHHHHhhhhhhHHHHHHhhHHhhhHHHHHHHHhhhhhhhhHHHHhhhhhhhh-hhHHHHHHHHHHhhhh
Q 003570 128 LSELELLSLRKQVAKESKRAQDQTRQIISLSSERDALTIECEQLRKQNSIDIAEIERRLQSEE-HLKFLQEEIREELNYE 206 (810)
Q Consensus 128 ~selELQtLRKQi~KESKRgqdLsrEv~~lk~ERD~Lk~EcEqLksqk~~~ea~~~~~lq~e~-D~~~llEElr~EL~yE 206 (810)
.++.++.-+..++..+..+..+|.++...++.+...++..++.+-. +..+++.+- .....++.+++|+...
T Consensus 905 ~le~~l~~~~~~~e~~ee~~~~le~~~~~~~~e~~~l~~~~~~~E~--------~~~k~~~Ek~~~e~~~~~l~~e~~~~ 976 (1930)
T KOG0161|consen 905 ELEKELKELKERLEEEEEKNAELERKKRKLEQEVQELKEQLEELEL--------TLQKLELEKNAAENKLKNLEEEINSL 976 (1930)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--------HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444555555566666666666666655555555555444443322 122333333 4556677777787777
Q ss_pred hhcchhhhhhhhhhhhhhHHHHHHHHHHHHHHHHhhhhhhhhhhhhhhhhhhhhhHHHHHHHHhhccCchhhHHHHHHHH
Q 003570 207 KEVSAHLRLQLEKTQDSNAELILAVKDLNEMLEQKNMEISSLSSKLEESKLVREDQLALEALAKERNKDKEVDMLKQKIR 286 (810)
Q Consensus 207 KelNaNL~LQLqKTQESNsELilAVqDLeeMLEqKn~EIs~ls~~~~e~~~~~edq~ale~Lvke~~~~~E~~~LkqKI~ 286 (810)
-+.++.|.=-=+-.++.+-+|...++..++++.+.++-...|-..+.+.... |-++.. -...+...+.
T Consensus 977 ~e~~~kL~kekk~lEe~~~~l~~~l~~~eek~~~l~k~~~kle~~l~~le~~---------le~e~~---~r~e~Ek~~r 1044 (1930)
T KOG0161|consen 977 DENISKLSKEKKELEERIRELQDDLQAEEEKAKSLNKAKAKLEQQLDDLEVT---------LEREKR---IRMELEKAKR 1044 (1930)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---------HHHHHH---HHHHHHHHHH
Confidence 7777777555455667788888888888888888888777765544432210 111111 1111222222
Q ss_pred HhhhHHHHhhhhHHHHHHHHHHHHHHHHHHHhhhhhhhhHHHHHHHHhhhhhhhhhhhHhhHHHHHHHHHHHHHHHHHHh
Q 003570 287 DQGDEIQFFKKHAEDLEIYIKQLTEDCQVLEQENQCLTSKLEKIQQQESMKSRECIESLATIKELESQSERLEDKIKQQS 366 (810)
Q Consensus 287 DL~~Eie~ykkerEeLe~~ieQL~~D~E~LkqEN~~ls~kLEq~q~Qeql~~~EcS~~~~~i~eLe~qve~LE~eLk~q~ 366 (810)
-+-|++-.......++..+.++|...+-...-+=+.+.++++.-+ .+-+-.+..|.+|.+++.-|..+|...+
T Consensus 1045 kle~el~~~~e~~~~~~~~~~el~~~l~kke~El~~l~~k~e~e~-------~~~~~l~k~i~eL~~~i~el~e~le~er 1117 (1930)
T KOG0161|consen 1045 KLEGELKDLQESIEELKKQKEELDNQLKKKESELSQLQSKLEDEQ-------AEVAQLQKQIKELEARIKELEEELEAER 1117 (1930)
T ss_pred HHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHH-------HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333333333333333334444333333333333333333444411 2223345667777777777777777777
Q ss_pred HHHhHhhHhHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHhhhHHHHHHHHHHHHHHHHHhhhhhhhHHHHHHHHHHHHHH
Q 003570 367 EEYSESLISINELECQVKELKRELDKQAQEFEDDIDAVTHAKTEQEQRAIRAEEELRKTRWKNTVTAERLQDEFRRLSVD 446 (810)
Q Consensus 367 ~efSesL~tI~eLE~qv~sLeeEl~~Qaq~fe~Dldam~~~k~EQEqRAi~AEeaLrKtR~~na~taErLQeEf~~LS~q 446 (810)
..-+..=.....|...+..|.++|..+. ....+....+..++.........|....+....++..|......-..+
T Consensus 1118 ~~r~K~ek~r~dL~~ele~l~~~Lee~~----~~t~~q~e~~~k~e~e~~~l~~~leee~~~~e~~~~~lr~~~~~~~~e 1193 (1930)
T KOG0161|consen 1118 ASRAKAERQRRDLSEELEELKEELEEQG----GTTAAQLELNKKREAEVQKLRRDLEEETLDHEAQIEELRKKHADSLAE 1193 (1930)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHh----hhHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHH
Confidence 7666666777777777777777777773 334444555566666666666677777777776666665555444444
Q ss_pred hhhhhhhhHHHHHHHHHHHHHHHhhHHHHHHHHH---HhHHHHhhhhhhhhccHHHHhHHHhhHHH-------HHHHHHH
Q 003570 447 MASKFDENEKLAMKAMTEANEQRMQKAHLEEMLQ---KANDELSLIKDQNGVKLQELSDQLEQKDK-------QIQKMYL 516 (810)
Q Consensus 447 msSt~eeNEklt~kA~~EaseLR~qk~~LEemLq---k~neeL~~i~dq~e~kl~eL~~qld~k~k-------~ie~m~~ 516 (810)
+.+.++.-=+.=.+...+=+.|......|...+. .....+......|++.|.+|.-.++..+. +.-.+..
T Consensus 1194 l~~qle~l~~~k~~lekek~~lq~e~~~l~~ev~~~~~~k~~~e~~~k~~E~~l~elq~k~~~~~~~~~~l~~q~~~l~~ 1273 (1930)
T KOG0161|consen 1194 LQEQLEQLQKDKAKLEKEKSDLQREIADLAAELEQLSSEKKDLEKKDKKLEAQLSELQLKLDEQERLRNDLTAKRSRLQN 1273 (1930)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhh
Confidence 4444443333333333444444444444443332 33333444444555555555555554444 4556666
Q ss_pred hhhhchhhhhHHhhhHHHH---HHhHHHHHHHHHHHHHHHHHhhhhhhhcc
Q 003570 517 ELDHSSSQLIDEHKSEAQK---HEALSTEIHMLRTEIEKLRKEQYNLSEHG 564 (810)
Q Consensus 517 Ele~kS~qle~~kk~~ee~---~~a~s~EI~~Lk~eie~L~~e~~~l~e~~ 564 (810)
|+...+++++.....-... ..+|..+|+.++.+++.-+...+.|..+.
T Consensus 1274 E~~~l~~~lee~e~~~~~~~r~~~~~~~qle~~k~qle~e~r~k~~l~~~l 1324 (1930)
T KOG0161|consen 1274 ENEELSRQLEEAEAKLSALSRDKQALESQLEELKRQLEEETREKSALENAL 1324 (1930)
T ss_pred hHHHHhhHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 7777777776655533322 34566677777777776666666665554
No 2
>KOG0161 consensus Myosin class II heavy chain [Cytoskeleton]
Probab=99.48 E-value=7.6e-08 Score=120.08 Aligned_cols=489 Identities=23% Similarity=0.303 Sum_probs=320.2
Q ss_pred CcchHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHhhhhhhHHHHHHhhHHhhhHHHHHHHHhhhhhhhhHHHHhhhhh
Q 003570 108 SDGSVEKLKNEIAVMMRQVELSELELLSLRKQVAKESKRAQDQTRQIISLSSERDALTIECEQLRKQNSIDIAEIERRLQ 187 (810)
Q Consensus 108 sd~~iEkLKsE~~~l~Rq~e~selELQtLRKQi~KESKRgqdLsrEv~~lk~ERD~Lk~EcEqLksqk~~~ea~~~~~lq 187 (810)
.+..+.+...|+..+......++-....|+....+..-...+|.-+ +..|++.+..-++-+.. +.
T Consensus 836 ~ee~~~~~~~e~~~l~~~l~~~e~~~~ele~~~~~~~~e~~~l~~~---l~~e~~~~~~aee~~~~------------~~ 900 (1930)
T KOG0161|consen 836 TEEEMRAKEEEIQKLKEELQKSESKRKELEEKLVKLLEEKNDLQEQ---LQAEKENLAEAEELLER------------LR 900 (1930)
T ss_pred hHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHH------------HH
Confidence 4578889999999999999999998888888888887777787777 66777766654443332 11
Q ss_pred hhh-hhHHHHHHHHHHhhhhhhcchhhhhhhhhhhhhhHHHHHHHHHHHHHHHHhhhhhhhhhhhhhhhhhhhh-hHHHH
Q 003570 188 SEE-HLKFLQEEIREELNYEKEVSAHLRLQLEKTQDSNAELILAVKDLNEMLEQKNMEISSLSSKLEESKLVRE-DQLAL 265 (810)
Q Consensus 188 ~e~-D~~~llEElr~EL~yEKelNaNL~LQLqKTQESNsELilAVqDLeeMLEqKn~EIs~ls~~~~e~~~~~e-dq~al 265 (810)
... ..-..+.++...+..+.+-|++|..+..+.+.--.+|=-.+.|+|-++.+-.+|-..+..+++.....-. .....
T Consensus 901 ~~k~~le~~l~~~~~~~e~~ee~~~~le~~~~~~~~e~~~l~~~~~~~E~~~~k~~~Ek~~~e~~~~~l~~e~~~~~e~~ 980 (1930)
T KOG0161|consen 901 AEKQELEKELKELKERLEEEEEKNAELERKKRKLEQEVQELKEQLEELELTLQKLELEKNAAENKLKNLEEEINSLDENI 980 (1930)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 222 3335677888899999999999999999999888888899999999999999999888877775443211 11112
Q ss_pred HHHHhhccCchhhHHHHHHHHHhhhHHHHhhhhHHHHHHHHHHHHHHHHHHHhhhh---hhhhHHHHHHHHhhhhh-hhh
Q 003570 266 EALAKERNKDKEVDMLKQKIRDQGDEIQFFKKHAEDLEIYIKQLTEDCQVLEQENQ---CLTSKLEKIQQQESMKS-REC 341 (810)
Q Consensus 266 e~Lvke~~~~~E~~~LkqKI~DL~~Eie~ykkerEeLe~~ieQL~~D~E~LkqEN~---~ls~kLEq~q~Qeql~~-~Ec 341 (810)
..|.+ +--.|++++.++...+..-.+....|......|+.+...|..... .+...+| ...-+. .+|
T Consensus 981 ~kL~k------ekk~lEe~~~~l~~~l~~~eek~~~l~k~~~kle~~l~~le~~le~e~~~r~e~E----k~~rkle~el 1050 (1930)
T KOG0161|consen 981 SKLSK------EKKELEERIRELQDDLQAEEEKAKSLNKAKAKLEQQLDDLEVTLEREKRIRMELE----KAKRKLEGEL 1050 (1930)
T ss_pred HHHHH------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHH
Confidence 22333 334577888888776666665666666655555555555544111 1111111 111255 889
Q ss_pred hhhHhhHHHHHHHHHHHHHHHHHHhHHHhHhhHhHHHHHHHHHHHHHH---HHHHHHHHHhhHHHHHhhhHHHHHHHHHH
Q 003570 342 IESLATIKELESQSERLEDKIKQQSEEYSESLISINELECQVKELKRE---LDKQAQEFEDDIDAVTHAKTEQEQRAIRA 418 (810)
Q Consensus 342 S~~~~~i~eLe~qve~LE~eLk~q~~efSesL~tI~eLE~qv~sLeeE---l~~Qaq~fe~Dldam~~~k~EQEqRAi~A 418 (810)
....-.|.+++.+++.|.+.|++...+-+.....|..+.+.+..+.+. |..+...+..|+++ +|+-+|
T Consensus 1051 ~~~~e~~~~~~~~~~el~~~l~kke~El~~l~~k~e~e~~~~~~l~k~i~eL~~~i~el~e~le~---------er~~r~ 1121 (1930)
T KOG0161|consen 1051 KDLQESIEELKKQKEELDNQLKKKESELSQLQSKLEDEQAEVAQLQKQIKELEARIKELEEELEA---------ERASRA 1121 (1930)
T ss_pred HHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---------HHHHHH
Confidence 999999999999999999999999999999999998888877776654 44445555555543 344444
Q ss_pred HHHHHHHhhhhhhhHHHHHHHHHHHHHHhhhhhhhhHHHHHHHHHHHHHHHhhHHHHHHHHHHhHHHHhhhhhhhhccHH
Q 003570 419 EEELRKTRWKNTVTAERLQDEFRRLSVDMASKFDENEKLAMKAMTEANEQRMQKAHLEEMLQKANDELSLIKDQNGVKLQ 498 (810)
Q Consensus 419 EeaLrKtR~~na~taErLQeEf~~LS~qmsSt~eeNEklt~kA~~EaseLR~qk~~LEemLqk~neeL~~i~dq~e~kl~ 498 (810)
-+.|.|+.-+-.++-|++++... .++-....-+..+=-.|. ++.+..|+...-.++..+.
T Consensus 1122 --K~ek~r~dL~~ele~l~~~Lee~----~~~t~~q~e~~~k~e~e~--------------~~l~~~leee~~~~e~~~~ 1181 (1930)
T KOG0161|consen 1122 --KAERQRRDLSEELEELKEELEEQ----GGTTAAQLELNKKREAEV--------------QKLRRDLEEETLDHEAQIE 1181 (1930)
T ss_pred --HHHHHHHHHHHHHHHHHHHHHHH----hhhHHHHHHHHHHHHHHH--------------HHHHHHHHHHHHhHHHHHH
Confidence 56777888777888888777665 222222222333333333 3333333333333333333
Q ss_pred HHhHHHhhHHHHHHHHHHhhhhchhhhhHHhhhHHHHHHhHHHHHHHHHHHHHHHHHhhhhhhhcccccCCCCCCcccch
Q 003570 499 ELSDQLEQKDKQIQKMYLELDHSSSQLIDEHKSEAQKHEALSTEIHMLRTEIEKLRKEQYNLSEHGKRRDDNKPKVSTGE 578 (810)
Q Consensus 499 eL~~qld~k~k~ie~m~~Ele~kS~qle~~kk~~ee~~~a~s~EI~~Lk~eie~L~~e~~~l~e~~~~~d~e~~k~s~~e 578 (810)
.+. +.-..-+.++.....++...+.--+.-...+..|+..|..+++.+.....++.... .-
T Consensus 1182 ~lr-------~~~~~~~~el~~qle~l~~~k~~lekek~~lq~e~~~l~~ev~~~~~~k~~~e~~~------------k~ 1242 (1930)
T KOG0161|consen 1182 ELR-------KKHADSLAELQEQLEQLQKDKAKLEKEKSDLQREIADLAAELEQLSSEKKDLEKKD------------KK 1242 (1930)
T ss_pred HHH-------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhccHHHHH------------HH
Confidence 333 11111222222222223222233333445667777777777776666555543222 33
Q ss_pred hhHHHhhhhhhhhhHHHHHHHHHHHHHHHHHHHHhhhccCchhHHHHhhHHHHHHHHHHHHHHHHhhhhHHHHHhhHHHH
Q 003570 579 TDMLIQKWNRERDDLEKKFASAKQEAAKAHEELISMRSLKGENEMLIGNLQAEVENLKVQQNKLQNSLIEEKLEKDNLAK 658 (810)
Q Consensus 579 ~~~~lq~~~~er~el~~~~a~~kkeae~~~~EL~~m~~~kdEkE~~i~~LqsE~e~lk~Q~~~LK~sL~~ee~EKe~l~k 658 (810)
+++.+..-....+++...+..+-...-++..|+..+-+.-.|.|..+..+.....++..|..++|.-|-.+--.+..|..
T Consensus 1243 ~E~~l~elq~k~~~~~~~~~~l~~q~~~l~~E~~~l~~~lee~e~~~~~~~r~~~~~~~qle~~k~qle~e~r~k~~l~~ 1322 (1930)
T KOG0161|consen 1243 LEAQLSELQLKLDEQERLRNDLTAKRSRLQNENEELSRQLEEAEAKLSALSRDKQALESQLEELKRQLEEETREKSALEN 1322 (1930)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHhhHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44555555555555555555555555566667777777778999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHh
Q 003570 659 QVFQLKDELQK 669 (810)
Q Consensus 659 Qv~qLk~eL~K 669 (810)
++.++..+...
T Consensus 1323 ~l~~l~~e~~~ 1333 (1930)
T KOG0161|consen 1323 ALRQLEHELDL 1333 (1930)
T ss_pred HHHHHHHHHHH
Confidence 88888777543
No 3
>TIGR00606 rad50 rad50. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=99.36 E-value=4.9e-06 Score=101.64 Aligned_cols=78 Identities=19% Similarity=0.280 Sum_probs=49.0
Q ss_pred HHHHHHHHHHHHHHHHHhHHHhHhhHhHHHHHHHHHHHHHHHHHHHHHHHhhHHHHH--hhhHHHHHHHHHHHHHHHHHh
Q 003570 349 KELESQSERLEDKIKQQSEEYSESLISINELECQVKELKRELDKQAQEFEDDIDAVT--HAKTEQEQRAIRAEEELRKTR 426 (810)
Q Consensus 349 ~eLe~qve~LE~eLk~q~~efSesL~tI~eLE~qv~sLeeEl~~Qaq~fe~Dldam~--~~k~EQEqRAi~AEeaLrKtR 426 (810)
.+|..-+..+..++..........-..+..++.+++.+.+++..-...+..--..|. |.-..++.....+++.+.+.+
T Consensus 573 ~~l~~~~~~~~~el~~~~~~~~~~~~el~~~e~~l~~~~~~l~~~~~eL~~~~~~i~~~~~~~~~~~~L~~~~~~l~~~~ 652 (1311)
T TIGR00606 573 KQLEDWLHSKSKEINQTRDRLAKLNKELASLEQNKNHINNELESKEEQLSSYEDKLFDVCGSQDEESDLERLKEEIEKSS 652 (1311)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCchhHHHHHHHHHHHHHHHH
Confidence 455555566666666666666666666677777777777666665555554444444 233556667777777777766
No 4
>TIGR02168 SMC_prok_B chromosome segregation protein SMC, common bacterial type. SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. This family represents the SMC protein of most bacteria. The smc gene is often associated with scpB (TIGR00281) and scpA genes, where scp stands for segregation and condensation protein. SMC was shown (in Caulobacter crescentus) to be induced early in S phase but present and bound to DNA throughout the cell cycle.
Probab=99.29 E-value=5.6e-06 Score=96.18 Aligned_cols=177 Identities=27% Similarity=0.340 Sum_probs=77.2
Q ss_pred HHHHhhhhhhcchhhhhhhhhhhhhhHHHHHHHHHHHHHHHHhhhhhhhhhhhhhhhhhhhhhHHHHHHHHhhccCchhh
Q 003570 199 IREELNYEKEVSAHLRLQLEKTQDSNAELILAVKDLNEMLEQKNMEISSLSSKLEESKLVREDQLALEALAKERNKDKEV 278 (810)
Q Consensus 199 lr~EL~yEKelNaNL~LQLqKTQESNsELilAVqDLeeMLEqKn~EIs~ls~~~~e~~~~~edq~ale~Lvke~~~~~E~ 278 (810)
++.++..-+.--..+.-++...+....++--.+.++...+++...++..+...+...... ...+..... .-..+.
T Consensus 307 ~~~~~~~l~~~~~~l~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~l~~~~~~---~~~~~~~~~--~~~~~~ 381 (1179)
T TIGR02168 307 LRERLANLERQLEELEAQLEELESKLDELAEELAELEEKLEELKEELESLEAELEELEAE---LEELESRLE--ELEEQL 381 (1179)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHH--HHHHHH
Confidence 333333333333444444455555555555555555555555555544443333221100 000000010 011244
Q ss_pred HHHHHHHHHhhhHHHHhhhhHHHHHHHHHHHHHHHHHHHhhhhhhhhHHHHHHHHhhhhhhhhhhhHhhHHHHHHHHHHH
Q 003570 279 DMLKQKIRDQGDEIQFFKKHAEDLEIYIKQLTEDCQVLEQENQCLTSKLEKIQQQESMKSRECIESLATIKELESQSERL 358 (810)
Q Consensus 279 ~~LkqKI~DL~~Eie~ykkerEeLe~~ieQL~~D~E~LkqEN~~ls~kLEq~q~Qeql~~~EcS~~~~~i~eLe~qve~L 358 (810)
..+...+.++..++..+......+...+.++...+..+..+-..+...+.+.++.. .-.++......+..++..+..+
T Consensus 382 ~~l~~~~~~~~~~~~~~~~~~~~l~~~~~~l~~~~~~l~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~l~~~~~~~ 459 (1179)
T TIGR02168 382 ETLRSKVAQLELQIASLNNEIERLEARLERLEDRRERLQQEIEELLKKLEEAELKE--LQAELEELEEELEELQEELERL 459 (1179)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHH--HHHHHHHHHHHHHHHHHHHHHH
Confidence 55666666666666666666677777777777666666554333333332111111 0133333444444444444444
Q ss_pred HHHHHHHhHHHhHhhHhHHHHHHH
Q 003570 359 EDKIKQQSEEYSESLISINELECQ 382 (810)
Q Consensus 359 E~eLk~q~~efSesL~tI~eLE~q 382 (810)
..++.....+....-..+..++..
T Consensus 460 ~~~~~~l~~~~~~~~~~~~~l~~~ 483 (1179)
T TIGR02168 460 EEALEELREELEEAEQALDAAERE 483 (1179)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 444444444333333333333333
No 5
>TIGR02169 SMC_prok_A chromosome segregation protein SMC, primarily archaeal type. SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. It is found in a single copy and is homodimeric in prokaryotes, but six paralogs (excluded from this family) are found in eukarotes, where SMC proteins are heterodimeric. This family represents the SMC protein of archaea and a few bacteria (Aquifex, Synechocystis, etc); the SMC of other bacteria is described by TIGR02168. The N- and C-terminal domains of this protein are well conserved, but the central hinge region is skewed in composition and highly divergent.
Probab=99.29 E-value=1.3e-05 Score=93.89 Aligned_cols=57 Identities=23% Similarity=0.344 Sum_probs=45.3
Q ss_pred chHHHHHHHHHHHHH-------hHhHHHHHHHHHhhhccccccccccccchhhhHHHHhhhhcc
Q 003570 751 NFTEVLMEVSLLKEK-------NKRMETELKEMQERYSEISLKFAEVEGERQQLVMTVRNLKNG 807 (810)
Q Consensus 751 ~~~~l~~e~~~lker-------n~~me~elkem~~ryseisl~faevegerqqlvm~~rnlk~~ 807 (810)
++.++-.++..|+.+ |...-.++.+..+||..+.=+++.++..+..|..++..|+.-
T Consensus 952 ~~~~l~~~l~~l~~~i~~l~~vN~~Ai~~~~~~~~~~~~l~~q~~dl~~~~~~l~~~i~~l~~~ 1015 (1164)
T TIGR02169 952 SLEDVQAELQRVEEEIRALEPVNMLAIQEYEEVLKRLDELKEKRAKLEEERKAILERIEEYEKK 1015 (1164)
T ss_pred CHHHHHHHHHHHHHHHHHcCCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 345555555555554 666668999999999999999999999999999999888743
No 6
>TIGR02168 SMC_prok_B chromosome segregation protein SMC, common bacterial type. SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. This family represents the SMC protein of most bacteria. The smc gene is often associated with scpB (TIGR00281) and scpA genes, where scp stands for segregation and condensation protein. SMC was shown (in Caulobacter crescentus) to be induced early in S phase but present and bound to DNA throughout the cell cycle.
Probab=99.27 E-value=1.6e-06 Score=100.47 Aligned_cols=27 Identities=22% Similarity=0.347 Sum_probs=15.8
Q ss_pred CCCCCccccccccccccccccCCcccc
Q 003570 62 VPQQGTVDAIKTHNHAHRRSNTDWSVG 88 (810)
Q Consensus 62 ~p~~~~v~~~~~~~~~h~rs~~dWS~~ 88 (810)
+.+.|.|...+++...-++.-.+|.+|
T Consensus 140 ~~~q~~~~~~~~~~~~~~~~~~~~~~~ 166 (1179)
T TIGR02168 140 IIEQGKISEIIEAKPEERRAIFEEAAG 166 (1179)
T ss_pred heecccHHHHHcCCHHHHHHHHHHHcc
Confidence 445566666665555555666666655
No 7
>PRK02224 chromosome segregation protein; Provisional
Probab=99.20 E-value=1.8e-05 Score=91.95 Aligned_cols=89 Identities=21% Similarity=0.234 Sum_probs=48.7
Q ss_pred HHhhhhhhhhhHHHHHHHHHHHHHHHHHHHHhhhccCchh-----HHHHhhHHHHHHHHHHHHHHHHhhhhHHHHHhhHH
Q 003570 582 LIQKWNRERDDLEKKFASAKQEAAKAHEELISMRSLKGEN-----EMLIGNLQAEVENLKVQQNKLQNSLIEEKLEKDNL 656 (810)
Q Consensus 582 ~lq~~~~er~el~~~~a~~kkeae~~~~EL~~m~~~kdEk-----E~~i~~LqsE~e~lk~Q~~~LK~sL~~ee~EKe~l 656 (810)
-+.....+.++|+.++..+++.-+...++|..++.--++- +..+..|..++..+...+..+...+..-+.+.+.+
T Consensus 600 ~i~~~~~~~~~~~~~~~~l~~~~~~~~~~l~~~r~~i~~l~~~~~~~~~e~l~~~~~~~~~~~~~l~~~l~~~~~~~~~l 679 (880)
T PRK02224 600 AIADAEDEIERLREKREALAELNDERRERLAEKRERKRELEAEFDEARIEEAREDKERAEEYLEQVEEKLDELREERDDL 679 (880)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444445555555555555544444444444444433331 33455566666666666666666666666666666
Q ss_pred HHHHHHHHHHHHhh
Q 003570 657 AKQVFQLKDELQKK 670 (810)
Q Consensus 657 ~kQv~qLk~eL~KK 670 (810)
.+++-.+++.+...
T Consensus 680 ~~~i~~~~~~~e~~ 693 (880)
T PRK02224 680 QAEIGAVENELEEL 693 (880)
T ss_pred HHHHHHHHHHHHHH
Confidence 66666666655544
No 8
>COG1196 Smc Chromosome segregation ATPases [Cell division and chromosome partitioning]
Probab=99.20 E-value=3.7e-05 Score=93.23 Aligned_cols=309 Identities=24% Similarity=0.308 Sum_probs=162.6
Q ss_pred HHHHHHhhHHHHHHHHHHhHHHHhhhhhhhhccHHHHhHHHhhHHHHHHHHHHhhh---hchhhhhHHhhhHHHHHHhHH
Q 003570 464 EANEQRMQKAHLEEMLQKANDELSLIKDQNGVKLQELSDQLEQKDKQIQKMYLELD---HSSSQLIDEHKSEAQKHEALS 540 (810)
Q Consensus 464 EaseLR~qk~~LEemLqk~neeL~~i~dq~e~kl~eL~~qld~k~k~ie~m~~Ele---~kS~qle~~kk~~ee~~~a~s 540 (810)
+...++.+...++.-+..+..+++. .+..+.++..++.....+++....++. ....++...-.+-+.....+.
T Consensus 675 ~l~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~ 750 (1163)
T COG1196 675 ELAELEAQLEKLEEELKSLKNELRS----LEDLLEELRRQLEELERQLEELKRELAALEEELEQLQSRLEELEEELEELE 750 (1163)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3334444444444444444444443 344455555555555555554444433 222333332333333444455
Q ss_pred HHHHHHHHHHHHHHHhhhhhhhcccccCCCCCCcccchhhHHHhhhhhhhhhHHHHHHHHHHHHHHHHHHHHhhhccCch
Q 003570 541 TEIHMLRTEIEKLRKEQYNLSEHGKRRDDNKPKVSTGETDMLIQKWNRERDDLEKKFASAKQEAAKAHEELISMRSLKGE 620 (810)
Q Consensus 541 ~EI~~Lk~eie~L~~e~~~l~e~~~~~d~e~~k~s~~e~~~~lq~~~~er~el~~~~a~~kkeae~~~~EL~~m~~~kdE 620 (810)
.++..+..++.++..+++.+.+.. ..++..+.+.....+.....+..+...+..++........++........-
T Consensus 751 ~~~~~~~~~~~~~~~~l~~~~~~~-----~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 825 (1163)
T COG1196 751 EELEELQERLEELEEELESLEEAL-----AKLKEEIEELEEKRQALQEELEELEEELEEAERRLDALERELESLEQRRER 825 (1163)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH-----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 555555555565555555554333 233334444444455555667777777777776666666666666655556
Q ss_pred hHHHHhhHHHHHHHHHHHHHHHHhhhhHHHHHhhHHHHHHHHHHHHHHhhHHHHHhhhhcccccCCCCch---------h
Q 003570 621 NEMLIGNLQAEVENLKVQQNKLQNSLIEEKLEKDNLAKQVFQLKDELQKKKEEINRTGKGLKKYGGPVSD---------A 691 (810)
Q Consensus 621 kE~~i~~LqsE~e~lk~Q~~~LK~sL~~ee~EKe~l~kQv~qLk~eL~KKe~~~~~~ekklk~s~g~~sd---------~ 691 (810)
-+..|..++-++..+..+++.|+..+..-+...+.+..++..+..++..-++.+........+-+.++.. .
T Consensus 826 ~~~ei~~l~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~l~~~~~~~~~l~~~l~~~~~~~~~l~~~l~~~~~~~~~~~~ 905 (1163)
T COG1196 826 LEQEIEELEEEIEELEEKLDELEEELEELEKELEELKEELEELEAEKEELEDELKELEEEKEELEEELRELESELAELKE 905 (1163)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 6666777777777777777777777777666666666666666666665555555554444433332222 0
Q ss_pred hhhHHHHHHHh--hhhhhhhhhhhcccchhchHHHHHhhhcccccccccccccccCCCCCCchH-HHHHHHHHHHHH---
Q 003570 692 QMTSMKERLRK--GQKKLNKAELETSDNRIAVDEYRHMIRKGETCSEKGVTALASHSSDEGNFT-EVLMEVSLLKEK--- 765 (810)
Q Consensus 692 ~~~~~~~~ike--g~ik~~e~ale~St~~~~~~~~~~~~~~~~~~~e~e~~~~~~~~~~~~~~~-~l~~e~~~lker--- 765 (810)
++..+..++.. +..... ...+.......... ....+. ++-..+..|+.+
T Consensus 906 ~~~~~~~~~~~l~~~~~~~----------------------~~~~~~~~~~~~~~---~~~~~~~~~~~~i~~le~~i~~ 960 (1163)
T COG1196 906 EIEKLRERLEELEAKLERL----------------------EVELPELEEELEEE---YEDTLETELEREIERLEEEIEA 960 (1163)
T ss_pred HHHHHHHHHHHHHHHHHHH----------------------HHHHHHHHhhhccc---cccchhHHHHHHHHHHHHHHHh
Confidence 11111111110 000000 00000000000000 001111 444555555555
Q ss_pred ----hHhHHHHHHHHHhhhccccccccccccchhhhHHHHhhhhc
Q 003570 766 ----NKRMETELKEMQERYSEISLKFAEVEGERQQLVMTVRNLKN 806 (810)
Q Consensus 766 ----n~~me~elkem~~ryseisl~faevegerqqlvm~~rnlk~ 806 (810)
|...-.+..+..+||-.++-+.+.+++.+-.|.-.+..++.
T Consensus 961 lg~VN~~Aiee~e~~~~r~~~l~~~~~dl~~a~~~l~~~i~~~d~ 1005 (1163)
T COG1196 961 LGPVNLRAIEEYEEVEERYEELKSQREDLEEAKEKLLEVIEELDK 1005 (1163)
T ss_pred ccCCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 77778899999999999999999999998888777766653
No 9
>TIGR00606 rad50 rad50. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=99.12 E-value=8.6e-05 Score=91.11 Aligned_cols=110 Identities=11% Similarity=0.117 Sum_probs=68.1
Q ss_pred CCcccchhhHHHhhhhhhhhhHHHHHHHHHHHHHHHHHH-----HHhhhccCchhHHHHhhHHHHHHHHHHHHHHHHhhh
Q 003570 572 PKVSTGETDMLIQKWNRERDDLEKKFASAKQEAAKAHEE-----LISMRSLKGENEMLIGNLQAEVENLKVQQNKLQNSL 646 (810)
Q Consensus 572 ~k~s~~e~~~~lq~~~~er~el~~~~a~~kkeae~~~~E-----L~~m~~~kdEkE~~i~~LqsE~e~lk~Q~~~LK~sL 646 (810)
++........-++............|..+-++...+... |..+..--..-..-|..+++++..+..+.+.++..+
T Consensus 928 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~y~~~~~~~qL~~~e~el~~~~~~ie~le~e~~~l~~~i~~l~kel 1007 (1311)
T TIGR00606 928 LISSKETSNKKAQDKVNDIKEKVKNIHGYMKDIENKIQDGKDDYLKQKETELNTVNAQLEECEKHQEKINEDMRLMRQDI 1007 (1311)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333333334444444444444444455555544433321 222111111114556788888999999999999999
Q ss_pred hHHHHHhhHHHHHHHHH--HHHHHhhHHHHHhhhhcc
Q 003570 647 IEEKLEKDNLAKQVFQL--KDELQKKKEEINRTGKGL 681 (810)
Q Consensus 647 ~~ee~EKe~l~kQv~qL--k~eL~KKe~~~~~~ekkl 681 (810)
..-..++.++..++..+ +.++...+..+..++..+
T Consensus 1008 ~~~~~~kr~l~dnL~~~~~~~~l~el~~eI~~l~~~~ 1044 (1311)
T TIGR00606 1008 DTQKIQERWLQDNLTLRKRENELKEVEEELKQHLKEM 1044 (1311)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999988887 888888888887776553
No 10
>KOG4674 consensus Uncharacterized conserved coiled-coil protein [Function unknown]
Probab=98.98 E-value=0.00027 Score=88.75 Aligned_cols=432 Identities=18% Similarity=0.245 Sum_probs=233.7
Q ss_pred hHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHhhh----hhhHHHHHHhhHHhhhHHHHHHHHhhhhhh-----hh--H
Q 003570 111 SVEKLKNEIAVMMRQVELSELELLSLRKQVAKESKR----AQDQTRQIISLSSERDALTIECEQLRKQNS-----ID--I 179 (810)
Q Consensus 111 ~iEkLKsE~~~l~Rq~e~selELQtLRKQi~KESKR----gqdLsrEv~~lk~ERD~Lk~EcEqLksqk~-----~~--e 179 (810)
.-++|-.|-.+|.++...+.-||.+.=..+....++ -.+|.-.+.+++.+=+.+.+-+..|+.+.. +. .
T Consensus 179 k~~rl~QEksll~s~~~wL~~eL~~~~ekll~~~re~s~~~~~L~~~L~~~~~~~~~~q~~~~~l~q~~~eLs~~ie~~~ 258 (1822)
T KOG4674|consen 179 KEERLEQEKSLLESENKWLSRELSKVNEKLLSLRREHSIEVEQLEEKLSDLKESLAELQEKNKSLKQQNEELSKKIESLN 258 (1822)
T ss_pred HHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 455666777777777777777777666666666666 677777777777777777777776666111 11 1
Q ss_pred HHHhhhhhhhhhhHHHHHHHHHHhhhhhhcchhhhh---------------------hhhhhhhhhHHHHHHHH----HH
Q 003570 180 AEIERRLQSEEHLKFLQEEIREELNYEKEVSAHLRL---------------------QLEKTQDSNAELILAVK----DL 234 (810)
Q Consensus 180 a~~~~~lq~e~D~~~llEElr~EL~yEKelNaNL~L---------------------QLqKTQESNsELilAVq----DL 234 (810)
.+.++-.+. + .....+...||.-.+-+|.=+.= -|.-..++|.|..--+. -|
T Consensus 259 ~~ls~~k~t--~-~s~~~kf~~El~~q~kL~eL~ks~~ee~~~~~~el~~~i~~~~klled~~~~~~e~~d~l~e~~~sl 335 (1822)
T KOG4674|consen 259 LELSKLKDT--A-ESSEEKFEKELSTQKKLNELWKSKLEELSHEVAELQRAIEELEKLLEDASERNKENTDQLKELEQSL 335 (1822)
T ss_pred HHHHHHHhh--h-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHH
Confidence 111111100 1 12233333333333333322222 23444555555433333 33
Q ss_pred HHHHHHhhhhhhhhhhhhhhhhhhhhh---HHH-------HHHHHhhccCch----hhHHHHHHHHHhhhHHHHhh----
Q 003570 235 NEMLEQKNMEISSLSSKLEESKLVRED---QLA-------LEALAKERNKDK----EVDMLKQKIRDQGDEIQFFK---- 296 (810)
Q Consensus 235 eeMLEqKn~EIs~ls~~~~e~~~~~ed---q~a-------le~Lvke~~~~~----E~~~LkqKI~DL~~Eie~yk---- 296 (810)
+.+.+..+++|+.+..-+....+-++- ..+ ..++++-+..=. .-..+.+++..+..||+-|.
T Consensus 336 ~~~~~~~~k~~~~le~~l~~an~~~~~~~~~~~~s~~~a~~s~~~~~~~sLtk~ys~~~~~qqqle~~~lele~~~~~l~ 415 (1822)
T KOG4674|consen 336 SKLNEKLEKKVSRLEGELEDANDSLSATGESSMVSEKAALASSLIRPGSSLTKLYSKYSKLQQQLESLKLELERLQNILS 415 (1822)
T ss_pred HHHHHHHHHHHHHHHHHHHhhhhhHHhhcccchhhhHHHHHHhhcccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 444444445555554333321110000 000 112222221111 12234444555555555443
Q ss_pred ---hhHHHHHHHHHHHHHHHHHHHhhhhhhhhHHHHHHHHhhhhhhhhhhhHhhHHHHHHHHHHHHHHHHHHhHHHhHhh
Q 003570 297 ---KHAEDLEIYIKQLTEDCQVLEQENQCLTSKLEKIQQQESMKSRECIESLATIKELESQSERLEDKIKQQSEEYSESL 373 (810)
Q Consensus 297 ---kerEeLe~~ieQL~~D~E~LkqEN~~ls~kLEq~q~Qeql~~~EcS~~~~~i~eLe~qve~LE~eLk~q~~efSesL 373 (810)
++.+.+.-.+++=..+|+.-...+..++..+.. .+.+|.-+.+.+..|..+...++.+++-....+|+.-
T Consensus 416 s~~eev~~~~p~lk~qr~~~e~~~~~~~~l~~el~~-------~~q~~~~~e~~~~~l~~~~~~~~renk~l~~~~sdls 488 (1822)
T KOG4674|consen 416 SFKEEVKQKAPILKEQRSELERMQETKAELSEELDF-------SNQKIQKLEKELESLKKQLNDLERENKLLEQQISDLS 488 (1822)
T ss_pred HHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 445555555566666777777766666666655 3355666666666666666666655555555444433
Q ss_pred Hh-------------------------------------------HHHHHH-------HHHHHHHHHHHHHHHHHhhHHH
Q 003570 374 IS-------------------------------------------INELEC-------QVKELKRELDKQAQEFEDDIDA 403 (810)
Q Consensus 374 ~t-------------------------------------------I~eLE~-------qv~sLeeEl~~Qaq~fe~Dlda 403 (810)
.. |++|+. .|..|-..++...+.-..++..
T Consensus 489 rqv~~Ll~el~e~~~~~~~~~~s~~~~~es~S~~iIse~Lv~F~nI~eLqekN~eLL~~vR~Lae~lE~~E~~~~~~~~~ 568 (1822)
T KOG4674|consen 489 RQVNVLLLELDELRKGSKITVSSDSTENESDSEEIISERLVEFSNINELQEKNVELLNAVRELAEKLEAAEKTQDKTLQN 568 (1822)
T ss_pred HHHHHHHHHHHHHHhhhhcccCccccccCccHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHH
Confidence 33 333332 3444444444444444333333
Q ss_pred HHhhhHHHHHHHHHHHHHHHHHhhhhhhhHHHHHHHHHHHHHHhhhhhhh-hHHHHHHHHHHHHHHHhhHHHHHHHHHHh
Q 003570 404 VTHAKTEQEQRAIRAEEELRKTRWKNTVTAERLQDEFRRLSVDMASKFDE-NEKLAMKAMTEANEQRMQKAHLEEMLQKA 482 (810)
Q Consensus 404 m~~~k~EQEqRAi~AEeaLrKtR~~na~taErLQeEf~~LS~qmsSt~ee-NEklt~kA~~EaseLR~qk~~LEemLqk~ 482 (810)
+...+.. .|-.+=+.|.+..-.....++-|..+|..+-.-.+++-+. +=+.+..|+.....-|+ ++..|..-
T Consensus 569 ~~k~~~~---~a~e~i~~L~~~l~e~~~~i~sLl~erd~y~e~l~~~e~~~~~k~nss~~~~t~~~~~----~e~~l~qL 641 (1822)
T KOG4674|consen 569 ILKETIN---EASEKIAELEKELEEQEQRIESLLTERDMYKELLAELEDSHQLKPNSSALDQTEAPRA----KEKRLRQL 641 (1822)
T ss_pred HHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcccccccCCCCchhhcccccchh----HHHHHHHH
Confidence 3333332 2223334678888888899999999988884222222222 23444555555555554 67777777
Q ss_pred HHHHhhhhhhhhccHHHHhHHHhhHHHHHHHHHHhhhhchhhhhHHhhhHHHHHHhHHHHHHHHHHHHHHHHHhhhhhhh
Q 003570 483 NDELSLIKDQNGVKLQELSDQLEQKDKQIQKMYLELDHSSSQLIDEHKSEAQKHEALSTEIHMLRTEIEKLRKEQYNLSE 562 (810)
Q Consensus 483 neeL~~i~dq~e~kl~eL~~qld~k~k~ie~m~~Ele~kS~qle~~kk~~ee~~~a~s~EI~~Lk~eie~L~~e~~~l~e 562 (810)
..+|+..+......+.-|..+++...+.+.-+..++++-..++ .--.++...+...|..+|++++.|..-...|..
T Consensus 642 e~~le~~~~E~~~~~~~l~e~~~~l~~ev~~ir~~l~k~~~~~----~fA~ekle~L~~~ie~~K~e~~tL~er~~~l~~ 717 (1822)
T KOG4674|consen 642 ENELESYKKEKRENLKKLQEDFDSLQKEVTAIRSQLEKLKNEL----NLAKEKLENLEKNLELTKEEVETLEERNKNLQS 717 (1822)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 7777777766666677777777777777766666666544444 556678889999999999999999966666644
Q ss_pred c
Q 003570 563 H 563 (810)
Q Consensus 563 ~ 563 (810)
+
T Consensus 718 ~ 718 (1822)
T KOG4674|consen 718 T 718 (1822)
T ss_pred H
Confidence 3
No 11
>PRK03918 chromosome segregation protein; Provisional
Probab=98.96 E-value=0.00028 Score=81.96 Aligned_cols=36 Identities=22% Similarity=0.272 Sum_probs=14.2
Q ss_pred HHHHHHHHHHHHHHHHhhhhHHHHHhhHHHHHHHHH
Q 003570 628 LQAEVENLKVQQNKLQNSLIEEKLEKDNLAKQVFQL 663 (810)
Q Consensus 628 LqsE~e~lk~Q~~~LK~sL~~ee~EKe~l~kQv~qL 663 (810)
+...+..++.++..+...+..-+...+.+.+++..+
T Consensus 664 l~~~~~~l~~~l~~l~~~~~~l~~~i~~l~~~i~~~ 699 (880)
T PRK03918 664 LREEYLELSRELAGLRAELEELEKRREEIKKTLEKL 699 (880)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333444444444444443333333333333333333
No 12
>TIGR02169 SMC_prok_A chromosome segregation protein SMC, primarily archaeal type. SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. It is found in a single copy and is homodimeric in prokaryotes, but six paralogs (excluded from this family) are found in eukarotes, where SMC proteins are heterodimeric. This family represents the SMC protein of archaea and a few bacteria (Aquifex, Synechocystis, etc); the SMC of other bacteria is described by TIGR02168. The N- and C-terminal domains of this protein are well conserved, but the central hinge region is skewed in composition and highly divergent.
Probab=98.96 E-value=0.00032 Score=82.52 Aligned_cols=45 Identities=20% Similarity=0.224 Sum_probs=20.8
Q ss_pred hHHHHHHHHHHHHHHhhhhhhHHHHHHhhHHhhhHHHHHHHHhhh
Q 003570 129 SELELLSLRKQVAKESKRAQDQTRQIISLSSERDALTIECEQLRK 173 (810)
Q Consensus 129 selELQtLRKQi~KESKRgqdLsrEv~~lk~ERD~Lk~EcEqLks 173 (810)
...+++.+..++..-...-..+..++..+..+...+..++..+..
T Consensus 235 ~~~~~~~~~~~l~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~ 279 (1164)
T TIGR02169 235 LERQKEAIERQLASLEEELEKLTEEISELEKRLEEIEQLLEELNK 279 (1164)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333444444444444444444444455555555555444444443
No 13
>PRK02224 chromosome segregation protein; Provisional
Probab=98.92 E-value=0.0004 Score=81.07 Aligned_cols=41 Identities=27% Similarity=0.306 Sum_probs=22.2
Q ss_pred HHHHHHHHHHHHHhhhhhhHHHHHHhhHHhhhHHHHHHHHhhh
Q 003570 131 LELLSLRKQVAKESKRAQDQTRQIISLSSERDALTIECEQLRK 173 (810)
Q Consensus 131 lELQtLRKQi~KESKRgqdLsrEv~~lk~ERD~Lk~EcEqLks 173 (810)
-.++.++.+|.. +..+++...+..++.+.+.+..++..++.
T Consensus 187 ~~~~~~~~~l~~--~~~~~l~~~l~~~~~~l~el~~~i~~~~~ 227 (880)
T PRK02224 187 GSLDQLKAQIEE--KEEKDLHERLNGLESELAELDEEIERYEE 227 (880)
T ss_pred HHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344455555554 33455555566666666666665555554
No 14
>KOG4674 consensus Uncharacterized conserved coiled-coil protein [Function unknown]
Probab=98.90 E-value=0.00092 Score=84.20 Aligned_cols=386 Identities=20% Similarity=0.257 Sum_probs=199.2
Q ss_pred hHHHHHHHHHhhhHHHHhhhhHHHHHHHHHHHHHHHHHHHhhhhhhhhHHHHHHHHhhhhh-hhhhhhHhhHHHHHHHHH
Q 003570 278 VDMLKQKIRDQGDEIQFFKKHAEDLEIYIKQLTEDCQVLEQENQCLTSKLEKIQQQESMKS-RECIESLATIKELESQSE 356 (810)
Q Consensus 278 ~~~LkqKI~DL~~Eie~ykkerEeLe~~ieQL~~D~E~LkqEN~~ls~kLEq~q~Qeql~~-~EcS~~~~~i~eLe~qve 356 (810)
++.++...+.+-.+....+...+.|..-|+-+....+.|..-|.+++.++=. +-|....+ .|.+++-..+.-++..|.
T Consensus 670 v~~ir~~l~k~~~~~~fA~ekle~L~~~ie~~K~e~~tL~er~~~l~~~i~~-~~q~~~~~s~eL~~a~~k~~~le~ev~ 748 (1822)
T KOG4674|consen 670 VTAIRSQLEKLKNELNLAKEKLENLEKNLELTKEEVETLEERNKNLQSTISK-QEQTVHTLSQELLSANEKLEKLEAELS 748 (1822)
T ss_pred HHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHhhhHHHHHHHHHHH
Confidence 3333333333333444444445555555666666666666667777666543 22332344 666666555666665555
Q ss_pred HHHHH--H-----HHHhHHHhHhhHhHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHhhhHHHHHHHHHHHHHHHHHhhhh
Q 003570 357 RLEDK--I-----KQQSEEYSESLISINELECQVKELKRELDKQAQEFEDDIDAVTHAKTEQEQRAIRAEEELRKTRWKN 429 (810)
Q Consensus 357 ~LE~e--L-----k~q~~efSesL~tI~eLE~qv~sLeeEl~~Qaq~fe~Dldam~~~k~EQEqRAi~AEeaLrKtR~~n 429 (810)
.|=++ | ..+..+|+.++.-...|..-+..|+--.+...+.|.+-.+ .+++|.-.-+-.|.+.+.+.
T Consensus 749 ~LKqE~~ll~~t~~rL~~e~~~l~~e~~~L~~~l~~lQt~~~~~e~s~~~~k~-------~~e~~i~eL~~el~~lk~kl 821 (1822)
T KOG4674|consen 749 NLKQEKLLLKETEERLSQELEKLSAEQESLQLLLDNLQTQKNELEESEMATKD-------KCESRIKELERELQKLKKKL 821 (1822)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHH
Confidence 54332 2 1234455556555555555444444444444443333222 22333333344444444443
Q ss_pred hhhHHHHHHHHHHHHHH---hhhhhhhhHHHHHHHHHHHHHHHhhHHHHHHHHHHhHHHHhhhhhhhh------------
Q 003570 430 TVTAERLQDEFRRLSVD---MASKFDENEKLAMKAMTEANEQRMQKAHLEEMLQKANDELSLIKDQNG------------ 494 (810)
Q Consensus 430 a~taErLQeEf~~LS~q---msSt~eeNEklt~kA~~EaseLR~qk~~LEemLqk~neeL~~i~dq~e------------ 494 (810)
---+..+-+=-..++++ ..+.+++=.+....++++.+.+|-....|+..+...+..|++.+.++.
T Consensus 822 q~~~~~~r~l~~~~~~~l~~~~~~i~~~~~~~~~~~~~l~~~~~~~~~le~k~~eL~k~l~~~~~~~~~l~~~~~~~d~~ 901 (1822)
T KOG4674|consen 822 QEKSSDLRELTNSLEKQLENAQNLVDELESELKSLLTSLDSVSTNIAKLEIKLSELEKRLKSAKTQLLNLDSKSSNEDAT 901 (1822)
T ss_pred HHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHhhccccchhhhhh
Confidence 33333322222222222 234556666666677777777777777777777777777666554432
Q ss_pred ------------------------ccHHHHhHHHhhHHHHHHHHHHhhhhchhhhhHHhhhHHHHHHhHHHHHHHHHHHH
Q 003570 495 ------------------------VKLQELSDQLEQKDKQIQKMYLELDHSSSQLIDEHKSEAQKHEALSTEIHMLRTEI 550 (810)
Q Consensus 495 ------------------------~kl~eL~~qld~k~k~ie~m~~Ele~kS~qle~~kk~~ee~~~a~s~EI~~Lk~ei 550 (810)
+++.++....-.....+++|-.+++.-..+++...++.....-.+..+|-.|+.+|
T Consensus 902 ~~~~~Lr~~~eq~~~l~~~L~~a~s~i~~yqe~~~s~eqsl~~~ks~lde~~~~~ea~ie~~~~k~tslE~~ls~L~~~~ 981 (1822)
T KOG4674|consen 902 ILEDTLRKELEEITDLKEELTDALSQIREYQEEYSSLEQSLESVKSELDETRLELEAKIESLHKKITSLEEELSELEKEI 981 (1822)
T ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 11222222223344455555556666666666666666666666666666666666
Q ss_pred HHHHHhhhhhhhcccccCCCCCCcccchhhHHHhhhhhhhhhHHHHHHHHHHHHHHHHHHHHhhhccCchhHHHHhhHHH
Q 003570 551 EKLRKEQYNLSEHGKRRDDNKPKVSTGETDMLIQKWNRERDDLEKKFASAKQEAAKAHEELISMRSLKGENEMLIGNLQA 630 (810)
Q Consensus 551 e~L~~e~~~l~e~~~~~d~e~~k~s~~e~~~~lq~~~~er~el~~~~a~~kkeae~~~~EL~~m~~~kdEkE~~i~~Lqs 630 (810)
..|+.+. +. ++...+.-+-.-..++.-+...+-.+.+-+..+..=++.++.-...-.+-++..++
T Consensus 982 ~~l~~e~------------~~---~~k~~e~~~~~~~~e~~sl~ne~~~~~~~~s~~~~~~~~~k~dl~~~~~~~~~a~~ 1046 (1822)
T KOG4674|consen 982 ENLREEL------------EL---STKGKEDKLLDLSREISSLQNELKSLLKAASQANEQIEDLQNDLKTETEQLRKAQS 1046 (1822)
T ss_pred HHHHHHH------------hc---cccchhhhHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 5555332 11 12222222222222222222333333333333333333333333333344555566
Q ss_pred HHHHHHHHHHHHHhhhhHHHHHhhHHHHHHHHHHHHHHhhHHHHHhhhhcccccCC
Q 003570 631 EVENLKVQQNKLQNSLIEEKLEKDNLAKQVFQLKDELQKKKEEINRTGKGLKKYGG 686 (810)
Q Consensus 631 E~e~lk~Q~~~LK~sL~~ee~EKe~l~kQv~qLk~eL~KKe~~~~~~ekklk~s~g 686 (810)
.-+.=-.+|.++-.-|..=..+-.++..++.+|+....+..+.+...++....-..
T Consensus 1047 ~Ye~el~~ha~~~q~l~kl~ee~~~~~~e~~~Lk~~~~~~~~~l~e~~~~w~E~~~ 1102 (1822)
T KOG4674|consen 1047 KYESELVQHADLTQKLIKLREEFAKCNDELLKLKKSRESRHALLSEQERDWSEKED 1102 (1822)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHhHHhhcccchHHHHH
Confidence 66665667777777777777778888888889998888888888877666554433
No 15
>COG1196 Smc Chromosome segregation ATPases [Cell division and chromosome partitioning]
Probab=98.56 E-value=0.0068 Score=74.23 Aligned_cols=231 Identities=23% Similarity=0.305 Sum_probs=124.7
Q ss_pred hhhhhHHHHHHHHHHHHHHHhhHHHHHHHHHHhHHHHhhhhhhhhccHHHHhHHHhhHHHHHHHHHHhh-------hhch
Q 003570 450 KFDENEKLAMKAMTEANEQRMQKAHLEEMLQKANDELSLIKDQNGVKLQELSDQLEQKDKQIQKMYLEL-------DHSS 522 (810)
Q Consensus 450 t~eeNEklt~kA~~EaseLR~qk~~LEemLqk~neeL~~i~dq~e~kl~eL~~qld~k~k~ie~m~~El-------e~kS 522 (810)
.+...+.-...+..+...+......++..+.++...++.++.+++.--.++. .+....+++..=...+ ...-
T Consensus 675 ~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~l~~~~~~~~~~~ 753 (1163)
T COG1196 675 ELAELEAQLEKLEEELKSLKNELRSLEDLLEELRRQLEELERQLEELKRELA-ALEEELEQLQSRLEELEEELEELEEEL 753 (1163)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4444555566667777777777777777777777777776665443222222 1111111111111111 1111
Q ss_pred hhhhHHhhhHHHHHHhHHHHHHHHHHHHHHHHHhhhhhhhcc--cccCCCCCCcccchhhHHHhhhhhhhhhHHHHHHHH
Q 003570 523 SQLIDEHKSEAQKHEALSTEIHMLRTEIEKLRKEQYNLSEHG--KRRDDNKPKVSTGETDMLIQKWNRERDDLEKKFASA 600 (810)
Q Consensus 523 ~qle~~kk~~ee~~~a~s~EI~~Lk~eie~L~~e~~~l~e~~--~~~d~e~~k~s~~e~~~~lq~~~~er~el~~~~a~~ 600 (810)
..+...-..-++.+..+...+..|+.+|+.+......+.+.. ++..+...+.-+.....-+..+...+..+...++.+
T Consensus 754 ~~~~~~~~~~~~~l~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ei~~l 833 (1163)
T COG1196 754 EELQERLEELEEELESLEEALAKLKEEIEELEEKRQALQEELEELEEELEEAERRLDALERELESLEQRRERLEQEIEEL 833 (1163)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 111111122222333333333444444443332222221111 111111122233344455566666667777777777
Q ss_pred HHHHHHHHHHHHhhhccCchhHHHHhhHHHHHHHHHHHHHHHHhhhhHHHHHhhHHHHHHHHHHHHHHhhHHHHHhhhhc
Q 003570 601 KQEAAKAHEELISMRSLKGENEMLIGNLQAEVENLKVQQNKLQNSLIEEKLEKDNLAKQVFQLKDELQKKKEEINRTGKG 680 (810)
Q Consensus 601 kkeae~~~~EL~~m~~~kdEkE~~i~~LqsE~e~lk~Q~~~LK~sL~~ee~EKe~l~kQv~qLk~eL~KKe~~~~~~ekk 680 (810)
..+...+...+..++..-++-+..+..++.++..++.....+...+..-..+++.+.+++-.+...+.+..........+
T Consensus 834 ~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~l~~~~~~~~~l~~~l~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~ 913 (1163)
T COG1196 834 EEEIEELEEKLDELEEELEELEKELEELKEELEELEAEKEELEDELKELEEEKEELEEELRELESELAELKEEIEKLRER 913 (1163)
T ss_pred HHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 77777777777777777777777777777777777777777777777777777777777777777777766665555444
Q ss_pred c
Q 003570 681 L 681 (810)
Q Consensus 681 l 681 (810)
+
T Consensus 914 ~ 914 (1163)
T COG1196 914 L 914 (1163)
T ss_pred H
Confidence 3
No 16
>PF05557 MAD: Mitotic checkpoint protein; InterPro: IPR008672 This family consists of several eukaryotic mitotic checkpoint (Mitotic arrest deficient or MAD) proteins. The mitotic spindle checkpoint monitors proper attachment of the bipolar spindle to the kinetochores of aligned sister chromatids and causes a cell cycle arrest in prometaphase when failures occur. Multiple components of the mitotic spindle checkpoint have been identified in Saccharomyces cerevisiae and higher eukaryotes. In Saccharomyces cerevisiae, the existence of a Mad1-dependent complex containing Mad2, Mad3, Bub3 and Cdc20 has been demonstrated [].; PDB: 1GO4_F 4DZO_A.
Probab=98.53 E-value=1.3e-07 Score=108.70 Aligned_cols=131 Identities=24% Similarity=0.263 Sum_probs=24.7
Q ss_pred HHHHHhHHHHHHHHHHHHHHHHHhhhhhhhcccccCCCCCCcccchhhHHHhhhhhhhhhHHHHHHHHHHHHHHHHHHHH
Q 003570 533 AQKHEALSTEIHMLRTEIEKLRKEQYNLSEHGKRRDDNKPKVSTGETDMLIQKWNRERDDLEKKFASAKQEAAKAHEELI 612 (810)
Q Consensus 533 ee~~~a~s~EI~~Lk~eie~L~~e~~~l~e~~~~~d~e~~k~s~~e~~~~lq~~~~er~el~~~~a~~kkeae~~~~EL~ 612 (810)
+....-+.+|++.||+-+.....+...... .........+...|+..+-..+.+.+..+.+|.
T Consensus 405 erq~~L~~kE~d~LR~~L~syd~e~~~~~~-----------------~~~~~~~~~~~~~l~~~~~~~~~ele~~l~~l~ 467 (722)
T PF05557_consen 405 ERQKALATKERDYLRAQLKSYDKEETTMNP-----------------SEQDTQRIKEIEDLEQLVDEYKAELEAQLEELE 467 (722)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred HHHHHHHHHHHHHHHHHHHHhhhhhccccC-----------------chhHHHHHhhHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333444567777777766655443322211 111223333344444444444444333333333
Q ss_pred hhhccCchhHHHHhhHHHHHHHHHHHHHHHHhhhhHHHHHhhHHHHHHHHHHHHHHhhHHHHHhhhhcccc
Q 003570 613 SMRSLKGENEMLIGNLQAEVENLKVQQNKLQNSLIEEKLEKDNLAKQVFQLKDELQKKKEEINRTGKGLKK 683 (810)
Q Consensus 613 ~m~~~kdEkE~~i~~LqsE~e~lk~Q~~~LK~sL~~ee~EKe~l~kQv~qLk~eL~KKe~~~~~~ekklk~ 683 (810)
.. -+........+..++..++.+...-..+++.-.-+...|+..|..|..++.+-+..+..++.+|..
T Consensus 468 ~~---l~~~k~~~~~~~~e~~~~~~~~~~~~~~~~~~~e~~~~L~~~~~~Le~e~~~L~~~~~~Le~~l~~ 535 (722)
T PF05557_consen 468 EE---LSEQKQRNETLEAELKSLKEQLSSNDRSLSSLSEELNELQKEIEELERENERLRQELEELESELEK 535 (722)
T ss_dssp -----------------------------HHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HH---HHhhhccccchhhhhhhhhhhhhhccchhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 21 112223344555566666666665555444433444446666666666666666666666655543
No 17
>PF07888 CALCOCO1: Calcium binding and coiled-coil domain (CALCOCO1) like; InterPro: IPR012852 Proteins found in this family are similar to the coiled-coil transcriptional coactivator protein expressed by Mus musculus (CoCoA, Q8CGU1 from SWISSPROT). This protein binds to a highly conserved N-terminal domain of p160 coactivators, such as GRIP1 (Q61026 from SWISSPROT), and thus enhances transcriptional activation by a number of nuclear receptors. CoCoA has a central coiled-coil region with three leucine zipper motifs, which is required for its interaction with GRIP1 and may regulate the autonomous transcriptional activation activity of the C-terminal region [].
Probab=98.47 E-value=0.0027 Score=72.80 Aligned_cols=93 Identities=28% Similarity=0.330 Sum_probs=50.3
Q ss_pred HHHHhhhhHHHHHHHHHHHHHHHHHHHhhhhhhhhHHHHHHHHhhhhhhhhhhhHhhHHHHHHHHHHHHHHHHHHhHHHh
Q 003570 291 EIQFFKKHAEDLEIYIKQLTEDCQVLEQENQCLTSKLEKIQQQESMKSRECIESLATIKELESQSERLEDKIKQQSEEYS 370 (810)
Q Consensus 291 Eie~ykkerEeLe~~ieQL~~D~E~LkqEN~~ls~kLEq~q~Qeql~~~EcS~~~~~i~eLe~qve~LE~eLk~q~~efS 370 (810)
.++.+-+++++|...+..|...++.|+.++..+...|.+.+ .+|-.+.....++....+.+..+.......+.
T Consensus 144 qlE~~qkE~eeL~~~~~~Le~e~~~l~~~v~~l~~eL~~~~-------ee~e~L~~~~kel~~~~e~l~~E~~~L~~q~~ 216 (546)
T PF07888_consen 144 QLEECQKEKEELLKENEQLEEEVEQLREEVERLEAELEQEE-------EEMEQLKQQQKELTESSEELKEERESLKEQLA 216 (546)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44444556666666666666666666665555555554422 23444444444455555555555555555555
Q ss_pred HhhHhHHHHHHHHHHHHHHH
Q 003570 371 ESLISINELECQVKELKREL 390 (810)
Q Consensus 371 esL~tI~eLE~qv~sLeeEl 390 (810)
+.-..|..|+..|.+|.+..
T Consensus 217 e~~~ri~~LEedi~~l~qk~ 236 (546)
T PF07888_consen 217 EARQRIRELEEDIKTLTQKE 236 (546)
T ss_pred HHHHHHHHHHHHHHHHHHHH
Confidence 55555666665555555444
No 18
>PF05701 WEMBL: Weak chloroplast movement under blue light; InterPro: IPR008545 This family consists of several plant proteins of unknown function. Several sequences in this family are described as being myosin heavy chain-like.
Probab=98.39 E-value=0.0031 Score=71.39 Aligned_cols=205 Identities=20% Similarity=0.268 Sum_probs=91.1
Q ss_pred hhHHHHhhhhHHHHHHHHHHHHHHHHHHHhhhhhhhhHHHHHHHHhhhhhhhhhhhHhhHHHHH-HHHH----HHHHHHH
Q 003570 289 GDEIQFFKKHAEDLEIYIKQLTEDCQVLEQENQCLTSKLEKIQQQESMKSRECIESLATIKELE-SQSE----RLEDKIK 363 (810)
Q Consensus 289 ~~Eie~ykkerEeLe~~ieQL~~D~E~LkqEN~~ls~kLEq~q~Qeql~~~EcS~~~~~i~eLe-~qve----~LE~eLk 363 (810)
..++..|+++....+.-=-+...+++.-+.-=-+|..+|+..+.-..--+..|-....-+.+++ +.+. .+-.+|.
T Consensus 40 qeel~~~k~~l~~~E~~k~~~l~ELe~akr~veel~~kLe~~~~~~~~a~~~~e~~k~r~~e~e~~~~~~~~~~~k~ele 119 (522)
T PF05701_consen 40 QEELAKLKEQLEAAEREKAQALSELESAKRTVEELKLKLEKAQAEEKQAEEDSELAKFRAKELEQGIAEEASVAWKAELE 119 (522)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHhHHHHHHHhhhhcccchHHHHHHHH
Confidence 3455555555555554444444555544444444555555544322112223333333334443 1111 1334444
Q ss_pred HHhHHHhHhhHhHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHhhhHHHHHHHHHHHHHHHHHhhhhhhhHHHHHHHHHHH
Q 003570 364 QQSEEYSESLISINELECQVKELKRELDKQAQEFEDDIDAVTHAKTEQEQRAIRAEEELRKTRWKNTVTAERLQDEFRRL 443 (810)
Q Consensus 364 ~q~~efSesL~tI~eLE~qv~sLeeEl~~Qaq~fe~Dldam~~~k~EQEqRAi~AEeaLrKtR~~na~taErLQeEf~~L 443 (810)
.-+..|...+..+.....++..+ ..|++++..++..-..+|-.|.-+. ..|+-.|+-|..|+..|
T Consensus 120 ~~~~q~~~~~~eL~~~k~EL~~l-----------r~e~~~~~~~k~~A~~~aeea~~~a----~~~~~kve~L~~Ei~~l 184 (522)
T PF05701_consen 120 SAREQYASAVAELDSVKQELEKL-----------RQELASALDAKNAALKQAEEAVSAA----EENEEKVEELSKEIIAL 184 (522)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH-----------HHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHH
Confidence 44555555444444444443333 3344444444444444444333332 25666778888887766
Q ss_pred HHHhhhh---hhhhHHHHHHHHHHHHHHHhhHHHHHHHHHHhHHHHhhhhhhhhccHHHHhHHHhhHHHHHH
Q 003570 444 SVDMASK---FDENEKLAMKAMTEANEQRMQKAHLEEMLQKANDELSLIKDQNGVKLQELSDQLEQKDKQIQ 512 (810)
Q Consensus 444 S~qmsSt---~eeNEklt~kA~~EaseLR~qk~~LEemLqk~neeL~~i~dq~e~kl~eL~~qld~k~k~ie 512 (810)
=.-+-+. +.+.+.-.+.++.+-+..+ ..++..|..+..+|..+..++ +-..+|..+++.-...+.
T Consensus 185 ke~l~~~~~a~~eAeee~~~~~~~~~~~~---~~~~~~leeae~~l~~L~~e~-~~~k~Le~kL~~a~~~l~ 252 (522)
T PF05701_consen 185 KESLESAKLAHIEAEEERIEIAAEREQDA---EEWEKELEEAEEELEELKEEL-EAAKDLESKLAEASAELE 252 (522)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHH
Confidence 5444433 3444444444443333222 233444444444444444444 233333333333333333
No 19
>PRK01156 chromosome segregation protein; Provisional
Probab=98.37 E-value=0.014 Score=69.07 Aligned_cols=29 Identities=10% Similarity=0.141 Sum_probs=16.7
Q ss_pred HHHHHHhHHHHHHHHHHHHHHHHHhhhhh
Q 003570 532 EAQKHEALSTEIHMLRTEIEKLRKEQYNL 560 (810)
Q Consensus 532 ~ee~~~a~s~EI~~Lk~eie~L~~e~~~l 560 (810)
..+....+..+|..+..+|+.|..++..|
T Consensus 467 ~~e~i~~~~~~i~~l~~~i~~l~~~~~~l 495 (895)
T PRK01156 467 SNHIINHYNEKKSRLEEKIREIEIEVKDI 495 (895)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34555566666666666666666555443
No 20
>PF01576 Myosin_tail_1: Myosin tail; InterPro: IPR002928 Muscle contraction is caused by sliding between the thick and thin filaments of the myofibril. Myosin is a major component of thick filaments and exists as a hexamer of 2 heavy chains [], 2 alkali light chains, and 2 regulatory light chains. The heavy chain can be subdivided into the N-terminal globular head and the C-terminal coiled-coil rod-like tail, although some forms have a globular region in their C-terminal. There are many cell-specific isoforms of myosin heavy chains, coded for by a multi-gene family []. Myosin interacts with actin to convert chemical energy, in the form of ATP, to mechanical energy []. The 3-D structure of the head portion of myosin has been determined [] and a model for actin-myosin complex has been constructed []. This family consists of the coiled-coil myosin heavy chain tail region. The coiled-coil is composed of the tail from two molecules of myosin. These can then assemble into the macromolecular thick filament []. The coiled-coil region provides the structural backbone of the thick filament [].; GO: 0003774 motor activity, 0016459 myosin complex; PDB: 2LNK_C 3ZWH_Q.
Probab=98.37 E-value=7.2e-08 Score=113.49 Aligned_cols=104 Identities=26% Similarity=0.322 Sum_probs=0.0
Q ss_pred HhhhhhhHHHHHHHHHHHHHHhhhhhhHHHHHHhhHHhhhHHHHHHHHhhhhhhhhHHHHhhhhhhhhhhHHHHHHHHHH
Q 003570 123 MRQVELSELELLSLRKQVAKESKRAQDQTRQIISLSSERDALTIECEQLRKQNSIDIAEIERRLQSEEHLKFLQEEIREE 202 (810)
Q Consensus 123 ~Rq~e~selELQtLRKQi~KESKRgqdLsrEv~~lk~ERD~Lk~EcEqLksqk~~~ea~~~~~lq~e~D~~~llEElr~E 202 (810)
.-+.-..+.||..+...+-.++...+.|.+.|..|...=+.|..+.+.=|.-. +++.. ...|...-|++|+++
T Consensus 10 ~~~l~kke~El~~~~~~~e~e~~~~~~l~k~~kelq~~i~el~eeLe~Er~~R----~kaek---~r~dL~~ELe~l~~~ 82 (859)
T PF01576_consen 10 EEQLKKKEEELSQLNSKLEDEQALRAQLQKKIKELQARIEELEEELESERQAR----AKAEK---QRRDLSEELEELKER 82 (859)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred HHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHH---HHHHHHHHHHHHHHH
Confidence 33445567888888888889999889999988888887777777776544411 11111 111666667777777
Q ss_pred hhhhhhcchhhhhhhhhhhhhhHHHHHHHHHHHH
Q 003570 203 LNYEKEVSAHLRLQLEKTQDSNAELILAVKDLNE 236 (810)
Q Consensus 203 L~yEKelNaNL~LQLqKTQESNsELilAVqDLee 236 (810)
|.=-- -.+.-...+.|--+ +||.-.=++||+
T Consensus 83 Lee~~-~~t~aq~E~~kkrE--~El~~Lrr~LEe 113 (859)
T PF01576_consen 83 LEEAG-GATQAQIELNKKRE--AELAKLRRDLEE 113 (859)
T ss_dssp ----------------------------------
T ss_pred HHHhh-CcHHhhHHHHHHHH--HHHHHHHHHHHH
Confidence 63222 22333444544444 355444445543
No 21
>KOG4643 consensus Uncharacterized coiled-coil protein [Function unknown]
Probab=98.36 E-value=0.018 Score=69.78 Aligned_cols=495 Identities=21% Similarity=0.233 Sum_probs=240.5
Q ss_pred HHHHHHHHHHhhhhhhHHHHHHHHHHHHHHhhhhhhHHHHHHhhHHhhhHHHHHHHHhhhhhhhhHHHHhhhhhhhhhhH
Q 003570 114 KLKNEIAVMMRQVELSELELLSLRKQVAKESKRAQDQTRQIISLSSERDALTIECEQLRKQNSIDIAEIERRLQSEEHLK 193 (810)
Q Consensus 114 kLKsE~~~l~Rq~e~selELQtLRKQi~KESKRgqdLsrEv~~lk~ERD~Lk~EcEqLksqk~~~ea~~~~~lq~e~D~~ 193 (810)
.|.-|+++++-+-+. ||-++...+-.-++|--|+-.++.|.+.|++|++..- +++..-.+.+.+-|..
T Consensus 174 hL~velAdle~kir~-------LrqElEEK~enll~lr~eLddleae~~klrqe~~e~l-----~ea~ra~~yrdeldal 241 (1195)
T KOG4643|consen 174 HLEVELADLEKKIRT-------LRQELEEKFENLLRLRNELDDLEAEISKLRQEIEEFL-----DEAHRADRYRDELDAL 241 (1195)
T ss_pred HHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-----HHHHhhhhhhhHHHHH
Confidence 578888888776554 5555556666666666666666666666666665543 3333333332222222
Q ss_pred HHHHHH--------HHHhhhhhhcchhhhhhhhhhhhhhHHHHHHHHHHHHHHHHhhhhhhhhhhhhhhhhhhhhhHHHH
Q 003570 194 FLQEEI--------REELNYEKEVSAHLRLQLEKTQDSNAELILAVKDLNEMLEQKNMEISSLSSKLEESKLVREDQLAL 265 (810)
Q Consensus 194 ~llEEl--------r~EL~yEKelNaNL~LQLqKTQESNsELilAVqDLeeMLEqKn~EIs~ls~~~~e~~~~~edq~al 265 (810)
+...|. =-++.|-|+ ++...-+-|. |+.+==+||+.+=
T Consensus 242 re~aer~d~~ykerlmDs~fykd-------RveelkedN~----vLleekeMLeeQL----------------------- 287 (1195)
T KOG4643|consen 242 REQAERPDTTYKERLMDSDFYKD-------RVEELKEDNR----VLLEEKEMLEEQL----------------------- 287 (1195)
T ss_pred HHhhhcCCCccchhhhhhHHHHH-------HHHHHHhhhH----HHHHHHHHHHHHH-----------------------
Confidence 221111 112223222 2222223333 2222223443321
Q ss_pred HHHHhh---ccCchhhHHHHHHHHHhhhHHHHhhhhHHHHHHHHHHHHHHHHHHHhhhhhhhhHHHHHHHHhhhhhhhhh
Q 003570 266 EALAKE---RNKDKEVDMLKQKIRDQGDEIQFFKKHAEDLEIYIKQLTEDCQVLEQENQCLTSKLEKIQQQESMKSRECI 342 (810)
Q Consensus 266 e~Lvke---~~~~~E~~~LkqKI~DL~~Eie~ykkerEeLe~~ieQL~~D~E~LkqEN~~ls~kLEq~q~Qeql~~~EcS 342 (810)
..+-.. +.-.+++-.+++||.|+..+.+.-+...++|-.-+.+|... ++++++++.|.++- -+ ..=.|-+
T Consensus 288 q~lrarse~~tleseiiqlkqkl~dm~~erdtdr~kteeL~eEnstLq~q-----~eqL~~~~ellq~~-se-~~E~en~ 360 (1195)
T KOG4643|consen 288 QKLRARSEGATLESEIIQLKQKLDDMRSERDTDRHKTEELHEENSTLQVQ-----KEQLDGQMELLQIF-SE-NEELENE 360 (1195)
T ss_pred HHHHhccccCChHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHH-----HHHhhhhhhHhhhh-hc-chhhhhh
Confidence 112111 22356888899999998777776665555554444444332 35555565555531 00 0001223
Q ss_pred hhHhhHHHHHHHHHHHHHHHHHHhH------HHhHhhHhHHHHHHH---HHHHHHHHHHHHHHHHhhHHHHHhhhHHHHH
Q 003570 343 ESLATIKELESQSERLEDKIKQQSE------EYSESLISINELECQ---VKELKRELDKQAQEFEDDIDAVTHAKTEQEQ 413 (810)
Q Consensus 343 ~~~~~i~eLe~qve~LE~eLk~q~~------efSesL~tI~eLE~q---v~sLeeEl~~Qaq~fe~Dldam~~~k~EQEq 413 (810)
+...-..+|.+ -.-+...|++.+. .-+. .+.++=++ +++.++-|+.+...+++-+-.++..+.+-+-
T Consensus 361 Sl~~e~eqLts-~ralkllLEnrrlt~tleelqss---s~Ee~~SK~leleke~KnLs~k~e~Leeri~ql~qq~~eled 436 (1195)
T KOG4643|consen 361 SLQVENEQLTS-DRALKLLLENRRLTGTLEELQSS---SYEELISKHLELEKEHKNLSKKHEILEERINQLLQQLAELED 436 (1195)
T ss_pred hHHHHHHHhhh-HHHHHHHHHhHHHHHHHHHHhhh---hHHHHHHHHHHHHHHhHhHhHHHHHHHHHHHHHHHHHHHHHH
Confidence 34444444444 1123333333322 0011 22222223 3334455777777788888888877777766
Q ss_pred HHHHHHHHHHHHhhhhhhhHHHHHHHHHHHHHHhhhhhhhhHHH------HHHHHHHHHHHHhhHHHHHHHHHHhHHHHh
Q 003570 414 RAIRAEEELRKTRWKNTVTAERLQDEFRRLSVDMASKFDENEKL------AMKAMTEANEQRMQKAHLEEMLQKANDELS 487 (810)
Q Consensus 414 RAi~AEeaLrKtR~~na~taErLQeEf~~LS~qmsSt~eeNEkl------t~kA~~EaseLR~qk~~LEemLqk~neeL~ 487 (810)
++--+- ..-+.||+|..-...-|+.---+||-. .-+-..+..+|+.+...|=..|+..-.+|.
T Consensus 437 ~~K~L~-----------~E~ekl~~e~~t~~~s~~rq~~e~e~~~q~ls~~~Q~~~et~el~~~iknlnk~L~~r~~els 505 (1195)
T KOG4643|consen 437 LEKKLQ-----------FELEKLLEETSTVTRSLSRQSLENEELDQLLSLQDQLEAETEELLNQIKNLNKSLNNRDLELS 505 (1195)
T ss_pred HHHHHH-----------HHHHHHHHHHHHHHHhHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 653332 223345555544444444332223221 234456677888887888888888877776
Q ss_pred hhhhhhhccHHHHhHHHhhHHHHHHHHHHhhhhchhhhhHHhhhHHHHHHhHHHHHHHHHHHHHHHHHhhhhhhhccccc
Q 003570 488 LIKDQNGVKLQELSDQLEQKDKQIQKMYLELDHSSSQLIDEHKSEAQKHEALSTEIHMLRTEIEKLRKEQYNLSEHGKRR 567 (810)
Q Consensus 488 ~i~dq~e~kl~eL~~qld~k~k~ie~m~~Ele~kS~qle~~kk~~ee~~~a~s~EI~~Lk~eie~L~~e~~~l~e~~~~~ 567 (810)
. .......|.+|+..+.-+.+-...- --.|++..-+-++-.+.|..+|+.|+.- ..+..+.++++.
T Consensus 506 r----l~a~~~elkeQ~kt~~~qye~~~~k----~eeLe~~l~~lE~ENa~LlkqI~~Lk~t-----~qn~~~LEq~~n- 571 (1195)
T KOG4643|consen 506 R----LHALKNELKEQYKTCDIQYELLSNK----LEELEELLGNLEEENAHLLKQIQSLKTT-----SQNGALLEQNNN- 571 (1195)
T ss_pred H----HHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHhhHHHHHHHHHHHHHHHHHH-----hHHHHHHHHhhh-
Confidence 6 3344555555555444444433322 2334455556667777888888888761 122223333310
Q ss_pred CCCCCCcccchhhHHHhhhhhhhhhHHHHHH---HHHHHHHHHHHHHHh--hhccC-chhHHHHhhHHHH----HHHHHH
Q 003570 568 DDNKPKVSTGETDMLIQKWNRERDDLEKKFA---SAKQEAAKAHEELIS--MRSLK-GENEMLIGNLQAE----VENLKV 637 (810)
Q Consensus 568 d~e~~k~s~~e~~~~lq~~~~er~el~~~~a---~~kkeae~~~~EL~~--m~~~k-dEkE~~i~~LqsE----~e~lk~ 637 (810)
.....-.++-+.+. .++-+-++...++-+ +-+.. +-+ ..|..|.-. |-.=++
T Consensus 572 -----------------~lE~~~~elkk~idaL~alrrhke~LE~e~mnQql~~d~~~~k-r~ie~Lr~~~~kll~~Kkd 633 (1195)
T KOG4643|consen 572 -----------------DLELIHNELKKYIDALNALRRHKEKLEEEIMNQQLFEDPIPLK-RDIEWLRRKESKLLKEKKD 633 (1195)
T ss_pred -----------------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhcCCchh-hhHHHHHHHHHhhcchhHH
Confidence 00111122222222 222222333222211 11111 111 122222221 223356
Q ss_pred HHHHHHhhhhHHHHHhhHHHHHHHHHHHHHHhhHHHHHhhhhcccc----cCCCCchhhhhHHHHHHHhhhhhhh
Q 003570 638 QQNKLQNSLIEEKLEKDNLAKQVFQLKDELQKKKEEINRTGKGLKK----YGGPVSDAQMTSMKERLRKGQKKLN 708 (810)
Q Consensus 638 Q~~~LK~sL~~ee~EKe~l~kQv~qLk~eL~KKe~~~~~~ekklk~----s~g~~sd~~~~~~~~~ikeg~ik~~ 708 (810)
+-.+.+.+|-.+.+.-+-+++-...|.-.++.+-+++-.|---.-+ -+|..|+..+.-....|..|+|..-
T Consensus 634 r~ree~kel~~ekl~ve~l~e~l~~lp~~fkt~n~e~l~V~sn~lEe~qr~~~~~sn~~~~l~q~~i~~~q~~~e 708 (1195)
T KOG4643|consen 634 RNREETKELMDEKLQVEDLQEKLRELPLEFKTKNDEILMVGSNILEERQRLGGCKSNAEIDLLQVSIRNSQIQGE 708 (1195)
T ss_pred HHHHHHhhccccchhHHHHHHHHHhCchhhccccchhhhhhhhhhhhhhhhccccccchHHHHHHHHhcccccch
Confidence 6777777777777777888888888888888666655544322211 1346666555555544554444433
No 22
>PRK03918 chromosome segregation protein; Provisional
Probab=98.28 E-value=0.02 Score=66.95 Aligned_cols=48 Identities=29% Similarity=0.369 Sum_probs=29.2
Q ss_pred HHHHHHHHHHHHHHhhhhHHHHHhhHHHHHHHHHHHHHHhhHHHHHhh
Q 003570 630 AEVENLKVQQNKLQNSLIEEKLEKDNLAKQVFQLKDELQKKKEEINRT 677 (810)
Q Consensus 630 sE~e~lk~Q~~~LK~sL~~ee~EKe~l~kQv~qLk~eL~KKe~~~~~~ 677 (810)
.++..++..+..+..-+..-..+.+.+.+++..++.++.+.+..+..+
T Consensus 659 ~~~~~l~~~~~~l~~~l~~l~~~~~~l~~~i~~l~~~i~~~~~~~~~l 706 (880)
T PRK03918 659 EEYEELREEYLELSRELAGLRAELEELEKRREEIKKTLEKLKEELEER 706 (880)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 555555566666666666666666666666666666666655544433
No 23
>PF07888 CALCOCO1: Calcium binding and coiled-coil domain (CALCOCO1) like; InterPro: IPR012852 Proteins found in this family are similar to the coiled-coil transcriptional coactivator protein expressed by Mus musculus (CoCoA, Q8CGU1 from SWISSPROT). This protein binds to a highly conserved N-terminal domain of p160 coactivators, such as GRIP1 (Q61026 from SWISSPROT), and thus enhances transcriptional activation by a number of nuclear receptors. CoCoA has a central coiled-coil region with three leucine zipper motifs, which is required for its interaction with GRIP1 and may regulate the autonomous transcriptional activation activity of the C-terminal region [].
Probab=98.27 E-value=0.011 Score=67.95 Aligned_cols=94 Identities=28% Similarity=0.392 Sum_probs=51.9
Q ss_pred hhhhhhhhhhhhHHHHHHHHHHHHHHHHhhhhhhhhhhhhhhhhhhhhhHHHHHHHHhhccCchhhHHHHHHHHHhhhHH
Q 003570 213 LRLQLEKTQDSNAELILAVKDLNEMLEQKNMEISSLSSKLEESKLVREDQLALEALAKERNKDKEVDMLKQKIRDQGDEI 292 (810)
Q Consensus 213 L~LQLqKTQESNsELilAVqDLeeMLEqKn~EIs~ls~~~~e~~~~~edq~ale~Lvke~~~~~E~~~LkqKI~DL~~Ei 292 (810)
|.-||.++|..+-||+-+-..|+.-.++...++..|...+..... ..+.|.... ..+......+..|+
T Consensus 141 lQ~qlE~~qkE~eeL~~~~~~Le~e~~~l~~~v~~l~~eL~~~~e------e~e~L~~~~------kel~~~~e~l~~E~ 208 (546)
T PF07888_consen 141 LQNQLEECQKEKEELLKENEQLEEEVEQLREEVERLEAELEQEEE------EMEQLKQQQ------KELTESSEELKEER 208 (546)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH------HHHHHHHHH------HHHHHHHHHHHHHH
Confidence 566777888888888888887777777777777665543332111 011122211 01111122233455
Q ss_pred HHhhhhHHHHHHHHHHHHHHHHHHHh
Q 003570 293 QFFKKHAEDLEIYIKQLTEDCQVLEQ 318 (810)
Q Consensus 293 e~ykkerEeLe~~ieQL~~D~E~Lkq 318 (810)
+....+..++...|.+|+.|+..|++
T Consensus 209 ~~L~~q~~e~~~ri~~LEedi~~l~q 234 (546)
T PF07888_consen 209 ESLKEQLAEARQRIRELEEDIKTLTQ 234 (546)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 55555666666666666666666665
No 24
>PF10174 Cast: RIM-binding protein of the cytomatrix active zone; InterPro: IPR019323 This entry represents a family of proteins that form part of the CAZ (cytomatrix at the active zone) complex which is involved in determining the site of synaptic vesicle fusion []. Located at the C terminus is a PDZ-binding motif that binds directly to RIM (a small G protein Rab-3A effector). These proteins also contain four coiled-coil domains [].
Probab=98.26 E-value=0.025 Score=67.42 Aligned_cols=278 Identities=22% Similarity=0.283 Sum_probs=153.5
Q ss_pred HHHHHHHHHHHhHHHhHhhHhHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHhhhHHHHHHHHHHHHHHHHHhhhhhhhHH
Q 003570 355 SERLEDKIKQQSEEYSESLISINELECQVKELKRELDKQAQEFEDDIDAVTHAKTEQEQRAIRAEEELRKTRWKNTVTAE 434 (810)
Q Consensus 355 ve~LE~eLk~q~~efSesL~tI~eLE~qv~sLeeEl~~Qaq~fe~Dldam~~~k~EQEqRAi~AEeaLrKtR~~na~taE 434 (810)
+..+=.+|......|+++=-.|..|..++...+.. +-.|-+|++++. -|.-+++..|.| +.-..+
T Consensus 303 ~~~~qt~l~~~~~~~~d~r~hi~~lkesl~~ke~~----~~~Lqsdve~Lr-------~rle~k~~~l~k----k~~~~~ 367 (775)
T PF10174_consen 303 LEALQTRLETLEEQDSDMRQHIEVLKESLRAKEQE----AEMLQSDVEALR-------FRLEEKNSQLEK----KQAQIE 367 (775)
T ss_pred HHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHH----HHHHHHhHHHHH-------HHHHHHHHHHHH----HHHHHH
Confidence 33334556666666777766677777766665544 336777887775 345555556655 355678
Q ss_pred HHHHHHHHHHHHhhhhhhhhHHHHHHHHHHHHHHHhhHHHHHHHHHHhHHHHhhhhhhhh-----ccHHHHhHHHhhHHH
Q 003570 435 RLQDEFRRLSVDMASKFDENEKLAMKAMTEANEQRMQKAHLEEMLQKANDELSLIKDQNG-----VKLQELSDQLEQKDK 509 (810)
Q Consensus 435 rLQeEf~~LS~qmsSt~eeNEklt~kA~~EaseLR~qk~~LEemLqk~neeL~~i~dq~e-----~kl~eL~~qld~k~k 509 (810)
.+|+|..+++.+|.-+.|..++.- .+++.|+...--|++.|..=..+|...++-.. ++...+...|+.-..
T Consensus 368 ~~qeE~~~~~~Ei~~l~d~~d~~e----~ki~~Lq~kie~Lee~l~ekd~ql~~~k~Rl~~~~d~~~~~~~~~~lEea~~ 443 (775)
T PF10174_consen 368 KLQEEKSRLQGEIEDLRDMLDKKE----RKINVLQKKIENLEEQLREKDRQLDEEKERLSSQADSSNEDEALETLEEALR 443 (775)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccccchHHHHHHHHHHHH
Confidence 999999999999999888877643 45677777766777777665555655555444 233333444444333
Q ss_pred HHHHHHHhhhhchhhhhHHhhhHHHHHHhHHHHHHHHHHHHHHHHHhhhhhhhcc---------cccCCCCCCcccchhh
Q 003570 510 QIQKMYLELDHSSSQLIDEHKSEAQKHEALSTEIHMLRTEIEKLRKEQYNLSEHG---------KRRDDNKPKVSTGETD 580 (810)
Q Consensus 510 ~ie~m~~Ele~kS~qle~~kk~~ee~~~a~s~EI~~Lk~eie~L~~e~~~l~e~~---------~~~d~e~~k~s~~e~~ 580 (810)
.-+++...|+...... .+...+-...+..|+..|+++++.|..+.+.-.-+. +.....+-..-++-..
T Consensus 444 eker~~e~l~e~r~~~---e~e~~Eele~~~~e~~~lk~~~~~LQ~eLsEk~~~l~~~kee~s~l~s~~~K~~s~i~~l~ 520 (775)
T PF10174_consen 444 EKERLQERLEEQRERA---EKERQEELETYQKELKELKAKLESLQKELSEKELQLEDAKEEASKLASSQEKKDSEIERLE 520 (775)
T ss_pred HHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHhhhHHHHHhhccchhhhHHHHHH
Confidence 3333333333222111 222234456788888888888888876655532222 2222222222222333
Q ss_pred HHHhhhhhhhhhHHHHHHHHHHHHHHHHHHHHhhhccCchhHHHHhhH-------HHHHHHHHHHHHHHHhhhhHHHHHh
Q 003570 581 MLIQKWNRERDDLEKKFASAKQEAAKAHEELISMRSLKGENEMLIGNL-------QAEVENLKVQQNKLQNSLIEEKLEK 653 (810)
Q Consensus 581 ~~lq~~~~er~el~~~~a~~kkeae~~~~EL~~m~~~kdEkE~~i~~L-------qsE~e~lk~Q~~~LK~sL~~ee~EK 653 (810)
+.+.+. +.+..+....|...+... +.-..|..| ..+++.-+...+-|--.|.+-+.||
T Consensus 521 I~lEk~--------------rek~~kl~~ql~k~~~~~-e~~~r~~~Le~ev~~~~ee~~kaq~EVERLl~~L~~~E~EK 585 (775)
T PF10174_consen 521 IELEKK--------------REKHEKLEKQLEKLRANA-ELRDRIQQLEQEVTRYREESEKAQAEVERLLDILREAENEK 585 (775)
T ss_pred HHHHHh--------------hhHHHHHHHHHHHHHhCH-hhcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333333 333333333333322211 111223333 3334444455556666666667777
Q ss_pred hHHHHHHHHHHHHHHh
Q 003570 654 DNLAKQVFQLKDELQK 669 (810)
Q Consensus 654 e~l~kQv~qLk~eL~K 669 (810)
...-++|..|..+|++
T Consensus 586 ~~ke~ki~~LekeLek 601 (775)
T PF10174_consen 586 NDKEKKIGELEKELEK 601 (775)
T ss_pred HhHHHHHHHHHHHHHH
Confidence 7777777777777655
No 25
>PRK01156 chromosome segregation protein; Provisional
Probab=98.26 E-value=0.024 Score=67.01 Aligned_cols=44 Identities=27% Similarity=0.356 Sum_probs=27.2
Q ss_pred HHHHHHHHHHHHHHhhhhhhHHHHHHhhHHhhhHHHHHHHHhhh
Q 003570 130 ELELLSLRKQVAKESKRAQDQTRQIISLSSERDALTIECEQLRK 173 (810)
Q Consensus 130 elELQtLRKQi~KESKRgqdLsrEv~~lk~ERD~Lk~EcEqLks 173 (810)
+-+|..+.+++..-.+.-.++..++..++.+-+.++.+++.|+.
T Consensus 196 e~eL~~~~~~i~el~~~~~~l~~~i~~~~~el~~~~~~l~~l~~ 239 (895)
T PRK01156 196 NLELENIKKQIADDEKSHSITLKEIERLSIEYNNAMDDYNNLKS 239 (895)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34455556666665666666666666666666666666666654
No 26
>PF00038 Filament: Intermediate filament protein; InterPro: IPR016044 Intermediate filaments (IF) [, , ] are proteins which are primordial components of the cytoskeleton and the nuclear envelope. They generally form filamentous structures 8 to 14 nm wide. IF proteins are members of a very large multigene family of proteins which has been subdivided in five major subgroups: Type I: Acidic cytokeratins. Type II: Basic cytokeratins. Type III: Vimentin, desmin, glial fibrillary acidic protein (GFAP), peripherin, and plasticin. Type IV: Neurofilaments L, H and M, alpha-internexin and nestin. Type V: Nuclear lamins A, B1, B2 and C. All IF proteins are structurally similar in that they consist of: a central rod domain comprising some 300 to 350 residues which is arranged in coiled-coiled alpha-helices, with at least two short characteristic interruptions; a N-terminal non-helical domain (head) of variable length; and a C-terminal domain (tail) which is also non-helical, and which shows extreme length variation between different IF proteins. While IF proteins are evolutionary and structurally related, they have limited sequence homologies except in several regions of the rod domain. This entry represents the central rod domain found in IF proteins.; PDB: 3TNU_B 3KLT_D 1GK4_F 3TRT_A 3G1E_A 3UF1_C 1GK6_B 1GK7_A 3TYY_B 3V4W_A ....
Probab=98.23 E-value=0.0058 Score=63.47 Aligned_cols=217 Identities=18% Similarity=0.311 Sum_probs=116.4
Q ss_pred chhhHHHHHHHHHhhhHHHHhhhhHHHHHHHHHHHHHHHHHHHhhhhhhhhHHHHHHHHhhhhhhhhhhhHhhHHHHHHH
Q 003570 275 DKEVDMLKQKIRDQGDEIQFFKKHAEDLEIYIKQLTEDCQVLEQENQCLTSKLEKIQQQESMKSRECIESLATIKELESQ 354 (810)
Q Consensus 275 ~~E~~~LkqKI~DL~~Eie~ykkerEeLe~~ieQL~~D~E~LkqEN~~ls~kLEq~q~Qeql~~~EcS~~~~~i~eLe~q 354 (810)
..++..|+..|.++..+..-+.-+++.+...++.+...|+.....+..+...+.... ..+...-....+|+++
T Consensus 53 e~el~~lr~~id~~~~eka~l~~e~~~l~~e~~~~r~k~e~e~~~~~~le~el~~lr-------k~ld~~~~~r~~le~~ 125 (312)
T PF00038_consen 53 EEELRELRRQIDDLSKEKARLELEIDNLKEELEDLRRKYEEELAERKDLEEELESLR-------KDLDEETLARVDLENQ 125 (312)
T ss_dssp HHHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHH
T ss_pred hhHHHHhHHhhhhHHHHhhHHhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHhhhh-------hhhhhhhhhHhHHHHH
Confidence 356677777777776655555555555555555555555555444444433333211 2333444455566666
Q ss_pred HHHHHHHHHHHhHHHhHh----------hHhH-------HHHHHHHHHHHHHHHHHHHHHHhhHHHHHhhhHHHHHHHHH
Q 003570 355 SERLEDKIKQQSEEYSES----------LISI-------NELECQVKELKRELDKQAQEFEDDIDAVTHAKTEQEQRAIR 417 (810)
Q Consensus 355 ve~LE~eLk~q~~efSes----------L~tI-------~eLE~qv~sLeeEl~~Qaq~fe~Dldam~~~k~EQEqRAi~ 417 (810)
|+.|..+|.-...-|-.- -.+| ..|..-+..+..+.+..+..+-.|+++....+++.=+.
T Consensus 126 i~~L~eEl~fl~~~heeEi~~L~~~~~~~~~~e~~~~~~~dL~~~L~eiR~~ye~~~~~~~~e~e~~y~~k~~~l~~--- 202 (312)
T PF00038_consen 126 IQSLKEELEFLKQNHEEEIEELREQIQSSVTVEVDQFRSSDLSAALREIRAQYEEIAQKNREELEEWYQSKLEELRQ--- 202 (312)
T ss_dssp HHHHHHHHHHHHHHHHHHHHTTSTT----------------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---
T ss_pred HHHHHHHHHHHHhhhhhhhhhhhhccccccceeecccccccchhhhhhHHHHHHHHHhhhhhhhhhhcccccccccc---
Confidence 666666665554444331 1111 23344444455555555555555555555554432111
Q ss_pred HHHHHHHHhhhhhhhHHHHHHHHHHHHHHhhhhhhhhHHHHHHHHHHHHHHHhhHHHHHHHHHHhHHHHhhhhhhhhccH
Q 003570 418 AEEELRKTRWKNTVTAERLQDEFRRLSVDMASKFDENEKLAMKAMTEANEQRMQKAHLEEMLQKANDELSLIKDQNGVKL 497 (810)
Q Consensus 418 AEeaLrKtR~~na~taErLQeEf~~LS~qmsSt~eeNEklt~kA~~EaseLR~qk~~LEemLqk~neeL~~i~dq~e~kl 497 (810)
..-.+..++..+..|+..+..++.+ .=++.+.|+.++..||..+..+...+..-...|...+
T Consensus 203 -------~~~~~~~~~~~~~~E~~~~r~~~~~-----------l~~el~~l~~~~~~Le~~l~~le~~~~~~~~~~~~~i 264 (312)
T PF00038_consen 203 -------QSEKSSEELESAKEELKELRRQIQS-----------LQAELESLRAKNASLERQLRELEQRLDEEREEYQAEI 264 (312)
T ss_dssp -------HHHHHHHHHHHHHHHHHHHHHHHHH-----------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred -------cccccccccchhHhHHHHHHhhhhH-----------hhhhhhccccchhhhhhhHHHHHHHHHHHHHHHHHhh
Confidence 1112344445555555555554433 2345566777777888877777777777777777777
Q ss_pred HHHhHHHhhHHHHHHHHHHhhh
Q 003570 498 QELSDQLEQKDKQIQKMYLELD 519 (810)
Q Consensus 498 ~eL~~qld~k~k~ie~m~~Ele 519 (810)
..|-.+|.....+|.++..|..
T Consensus 265 ~~le~el~~l~~~~~~~~~ey~ 286 (312)
T PF00038_consen 265 AELEEELAELREEMARQLREYQ 286 (312)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHH
T ss_pred hccchhHHHHHHHHHHHHHHHH
Confidence 7777777666666666655543
No 27
>PF10174 Cast: RIM-binding protein of the cytomatrix active zone; InterPro: IPR019323 This entry represents a family of proteins that form part of the CAZ (cytomatrix at the active zone) complex which is involved in determining the site of synaptic vesicle fusion []. Located at the C terminus is a PDZ-binding motif that binds directly to RIM (a small G protein Rab-3A effector). These proteins also contain four coiled-coil domains [].
Probab=98.12 E-value=0.049 Score=65.08 Aligned_cols=124 Identities=16% Similarity=0.349 Sum_probs=100.2
Q ss_pred chhhHHHHHHHHHhhhHHHHhhhhHHHHHHHHHHHHHHHHHHHhhhhhhhhHHHHHHHHhhhhhhhhhhhHhhHHHHHHH
Q 003570 275 DKEVDMLKQKIRDQGDEIQFFKKHAEDLEIYIKQLTEDCQVLEQENQCLTSKLEKIQQQESMKSRECIESLATIKELESQ 354 (810)
Q Consensus 275 ~~E~~~LkqKI~DL~~Eie~ykkerEeLe~~ieQL~~D~E~LkqEN~~ls~kLEq~q~Qeql~~~EcS~~~~~i~eLe~q 354 (810)
..|+-.|.-++.++....-.|+.+.+.|...+--....|+.|..++-.|.++|+... .-|.--.+.|..+..-
T Consensus 300 ~~E~~~~qt~l~~~~~~~~d~r~hi~~lkesl~~ke~~~~~Lqsdve~Lr~rle~k~-------~~l~kk~~~~~~~qeE 372 (775)
T PF10174_consen 300 KSELEALQTRLETLEEQDSDMRQHIEVLKESLRAKEQEAEMLQSDVEALRFRLEEKN-------SQLEKKQAQIEKLQEE 372 (775)
T ss_pred HHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHH-------HHHHHHHHHHHHHHHH
Confidence 347777778888888788888889999999999999999999999999999998833 4445556667777777
Q ss_pred HHHHHHHHHHHhHHHhHhhHhHHHHHHHHHHHHHHHHHHHHHHHhhHHHHH
Q 003570 355 SERLEDKIKQQSEEYSESLISINELECQVKELKRELDKQAQEFEDDIDAVT 405 (810)
Q Consensus 355 ve~LE~eLk~q~~efSesL~tI~eLE~qv~sLeeEl~~Qaq~fe~Dldam~ 405 (810)
..++-.+|......+--+-.-|+.|...|..|+..+..+...+....+.+.
T Consensus 373 ~~~~~~Ei~~l~d~~d~~e~ki~~Lq~kie~Lee~l~ekd~ql~~~k~Rl~ 423 (775)
T PF10174_consen 373 KSRLQGEIEDLRDMLDKKERKINVLQKKIENLEEQLREKDRQLDEEKERLS 423 (775)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 777777777777777777778899999999999999999888888888887
No 28
>PF00038 Filament: Intermediate filament protein; InterPro: IPR016044 Intermediate filaments (IF) [, , ] are proteins which are primordial components of the cytoskeleton and the nuclear envelope. They generally form filamentous structures 8 to 14 nm wide. IF proteins are members of a very large multigene family of proteins which has been subdivided in five major subgroups: Type I: Acidic cytokeratins. Type II: Basic cytokeratins. Type III: Vimentin, desmin, glial fibrillary acidic protein (GFAP), peripherin, and plasticin. Type IV: Neurofilaments L, H and M, alpha-internexin and nestin. Type V: Nuclear lamins A, B1, B2 and C. All IF proteins are structurally similar in that they consist of: a central rod domain comprising some 300 to 350 residues which is arranged in coiled-coiled alpha-helices, with at least two short characteristic interruptions; a N-terminal non-helical domain (head) of variable length; and a C-terminal domain (tail) which is also non-helical, and which shows extreme length variation between different IF proteins. While IF proteins are evolutionary and structurally related, they have limited sequence homologies except in several regions of the rod domain. This entry represents the central rod domain found in IF proteins.; PDB: 3TNU_B 3KLT_D 1GK4_F 3TRT_A 3G1E_A 3UF1_C 1GK6_B 1GK7_A 3TYY_B 3V4W_A ....
Probab=98.09 E-value=0.014 Score=60.57 Aligned_cols=149 Identities=25% Similarity=0.369 Sum_probs=71.1
Q ss_pred HHHHHHHHHHHHHHHHhHHHhHhhHhHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHhhhHHHHHHHHHHHHHHHHHhhhh
Q 003570 350 ELESQSERLEDKIKQQSEEYSESLISINELECQVKELKRELDKQAQEFEDDIDAVTHAKTEQEQRAIRAEEELRKTRWKN 429 (810)
Q Consensus 350 eLe~qve~LE~eLk~q~~efSesL~tI~eLE~qv~sLeeEl~~Qaq~fe~Dldam~~~k~EQEqRAi~AEeaLrKtR~~n 429 (810)
.|+.++.++..++...+..|.+.......++..+. ++-.|++..+.+++..+.++....+-|.-.+-.+
T Consensus 72 ~l~~e~~~l~~e~~~~r~k~e~e~~~~~~le~el~-----------~lrk~ld~~~~~r~~le~~i~~L~eEl~fl~~~h 140 (312)
T PF00038_consen 72 RLELEIDNLKEELEDLRRKYEEELAERKDLEEELE-----------SLRKDLDEETLARVDLENQIQSLKEELEFLKQNH 140 (312)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-----------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHh-----------hhhhhhhhhhhhHhHHHHHHHHHHHHHHHHHhhh
Confidence 33444444444555555555544444444444444 4446677777777777777666665555444433
Q ss_pred hhhHHHHHHHH-HHHHHHhhhhhhhhHHHHHHHHHHHHHHHhhHHHHHHHHHHhHHHHhhhhhhhhccHHHHhHHHhhHH
Q 003570 430 TVTAERLQDEF-RRLSVDMASKFDENEKLAMKAMTEANEQRMQKAHLEEMLQKANDELSLIKDQNGVKLQELSDQLEQKD 508 (810)
Q Consensus 430 a~taErLQeEf-~~LS~qmsSt~eeNEklt~kA~~EaseLR~qk~~LEemLqk~neeL~~i~dq~e~kl~eL~~qld~k~ 508 (810)
.-.+.-|+..+ ...++.|.+.+... ...|+.+ +| +..+....+-..++. .-|..++.++..+...-.
T Consensus 141 eeEi~~L~~~~~~~~~~e~~~~~~~d---L~~~L~e---iR---~~ye~~~~~~~~e~e---~~y~~k~~~l~~~~~~~~ 208 (312)
T PF00038_consen 141 EEEIEELREQIQSSVTVEVDQFRSSD---LSAALRE---IR---AQYEEIAQKNREELE---EWYQSKLEELRQQSEKSS 208 (312)
T ss_dssp HHHHHTTSTT-------------------HHHHHHH---HH---HHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHH
T ss_pred hhhhhhhhhccccccceeeccccccc---chhhhhh---HH---HHHHHHHhhhhhhhh---hhcccccccccccccccc
Confidence 33333333333 23333333322221 2233322 33 344555555555543 467778888877777766
Q ss_pred HHHHHHHHhhhhc
Q 003570 509 KQIQKMYLELDHS 521 (810)
Q Consensus 509 k~ie~m~~Ele~k 521 (810)
..+...-.|+...
T Consensus 209 ~~~~~~~~E~~~~ 221 (312)
T PF00038_consen 209 EELESAKEELKEL 221 (312)
T ss_dssp HHHHHHHHHHHHH
T ss_pred cccchhHhHHHHH
Confidence 6666655554333
No 29
>PF05557 MAD: Mitotic checkpoint protein; InterPro: IPR008672 This family consists of several eukaryotic mitotic checkpoint (Mitotic arrest deficient or MAD) proteins. The mitotic spindle checkpoint monitors proper attachment of the bipolar spindle to the kinetochores of aligned sister chromatids and causes a cell cycle arrest in prometaphase when failures occur. Multiple components of the mitotic spindle checkpoint have been identified in Saccharomyces cerevisiae and higher eukaryotes. In Saccharomyces cerevisiae, the existence of a Mad1-dependent complex containing Mad2, Mad3, Bub3 and Cdc20 has been demonstrated [].; PDB: 1GO4_F 4DZO_A.
Probab=98.05 E-value=3e-05 Score=89.75 Aligned_cols=64 Identities=23% Similarity=0.334 Sum_probs=0.0
Q ss_pred chHHHHHHHHHHHHhhhhhhH-----------HHHHHHHHHHHHHhhhhhhHHHHHHhhHHhhhHHHHHHHHhhh
Q 003570 110 GSVEKLKNEIAVMMRQVELSE-----------LELLSLRKQVAKESKRAQDQTRQIISLSSERDALTIECEQLRK 173 (810)
Q Consensus 110 ~~iEkLKsE~~~l~Rq~e~se-----------lELQtLRKQi~KESKRgqdLsrEv~~lk~ERD~Lk~EcEqLks 173 (810)
.++..+|+.|..|.+...-.. .++..+.+++-...++.++|...+..+...+..++.+...++.
T Consensus 61 ~e~~~~k~~l~~Le~e~~~~~~e~~~~~~~le~~~~~l~~~~~~~~~~~~ele~~~~~l~~~~~~le~el~~~~e 135 (722)
T PF05557_consen 61 AELIELKAQLNQLEYELEQLKQEHERAQLELEKELRELQRQLEREFKRNQELEARLKQLEEREEELEEELEEAEE 135 (722)
T ss_dssp ---------------------------------------------------------------------------
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 355556665555555443333 3444567777788888888887777776666666665555544
No 30
>PF01576 Myosin_tail_1: Myosin tail; InterPro: IPR002928 Muscle contraction is caused by sliding between the thick and thin filaments of the myofibril. Myosin is a major component of thick filaments and exists as a hexamer of 2 heavy chains [], 2 alkali light chains, and 2 regulatory light chains. The heavy chain can be subdivided into the N-terminal globular head and the C-terminal coiled-coil rod-like tail, although some forms have a globular region in their C-terminal. There are many cell-specific isoforms of myosin heavy chains, coded for by a multi-gene family []. Myosin interacts with actin to convert chemical energy, in the form of ATP, to mechanical energy []. The 3-D structure of the head portion of myosin has been determined [] and a model for actin-myosin complex has been constructed []. This family consists of the coiled-coil myosin heavy chain tail region. The coiled-coil is composed of the tail from two molecules of myosin. These can then assemble into the macromolecular thick filament []. The coiled-coil region provides the structural backbone of the thick filament [].; GO: 0003774 motor activity, 0016459 myosin complex; PDB: 2LNK_C 3ZWH_Q.
Probab=97.94 E-value=1.8e-06 Score=101.91 Aligned_cols=496 Identities=22% Similarity=0.288 Sum_probs=0.0
Q ss_pred hHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHhhhhhhHHHHHHhhHHhhhHHHHHHHHhhhhhhhhHHHHhhhhhhhh
Q 003570 111 SVEKLKNEIAVMMRQVELSELELLSLRKQVAKESKRAQDQTRQIISLSSERDALTIECEQLRKQNSIDIAEIERRLQSEE 190 (810)
Q Consensus 111 ~iEkLKsE~~~l~Rq~e~selELQtLRKQi~KESKRgqdLsrEv~~lk~ERD~Lk~EcEqLksqk~~~ea~~~~~lq~e~ 190 (810)
.++.+.+-+..|.|...-+...|..++.++..+++.-..|...+..+..|.+.|+..++.--..+. .-.....+++.+.
T Consensus 223 qLee~e~~~~~l~r~k~~L~~qLeelk~~leeEtr~k~~L~~~l~~le~e~~~L~eqleeE~e~k~-~l~~qlsk~~~El 301 (859)
T PF01576_consen 223 QLEEAESQLSQLQREKSSLESQLEELKRQLEEETRAKQALEKQLRQLEHELEQLREQLEEEEEAKS-ELERQLSKLNAEL 301 (859)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHhHhhhhhhhHHHHHHHHHHHHHHHHHHhhhhhhHH-HHHHHHHHHhhHH
Confidence 455555666667776667778899999999999999999999999999999999887773222000 0000111222222
Q ss_pred -hhHHHHHHHHHH-hhhhhhcchhhhhhhhhhhhhhHHHHHHHHHHHHHHHHhhhhhhhhhhhhhhhhhhhhhHHHHHHH
Q 003570 191 -HLKFLQEEIREE-LNYEKEVSAHLRLQLEKTQDSNAELILAVKDLNEMLEQKNMEISSLSSKLEESKLVREDQLALEAL 268 (810)
Q Consensus 191 -D~~~llEElr~E-L~yEKelNaNL~LQLqKTQESNsELilAVqDLeeMLEqKn~EIs~ls~~~~e~~~~~edq~ale~L 268 (810)
+|+.-++.--.. +.---+..--|.-+|.-.++..-++-..+..|+-.--....|+.++...+... +.+...|
T Consensus 302 ~~~k~K~e~e~~~~~EelEeaKKkL~~~L~el~e~le~~~~~~~~LeK~k~rL~~EleDl~~eLe~~------~~~~~~L 375 (859)
T PF01576_consen 302 EQWKKKYEEEAEQRTEELEEAKKKLERKLQELQEQLEEANAKVSSLEKTKKRLQGELEDLTSELEKA------QAAAAEL 375 (859)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred HHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH------HHHHHHH
Confidence 232222221111 00001222334445555666655666666666655555555665554433321 1122223
Q ss_pred HhhccC-chhhHHHHHHHHHhhhHHHHhhhhHHH-------HHHHHHHHHHHHHHHHhhhhhhhhHHHHHHHHhhhhhhh
Q 003570 269 AKERNK-DKEVDMLKQKIRDQGDEIQFFKKHAED-------LEIYIKQLTEDCQVLEQENQCLTSKLEKIQQQESMKSRE 340 (810)
Q Consensus 269 vke~~~-~~E~~~LkqKI~DL~~Eie~ykkerEe-------Le~~ieQL~~D~E~LkqEN~~ls~kLEq~q~Qeql~~~E 340 (810)
-|.... +..+..++.+..++..+.+.+.++... |...++++....+.|..+|-.|+..+.. ...-
T Consensus 376 eKKqr~fDk~l~e~k~~~~~~~~e~d~~q~e~r~~~te~~~Lk~~lee~~e~~e~lere~k~L~~El~d-------l~~q 448 (859)
T PF01576_consen 376 EKKQRKFDKQLAEWKAKVEELQAERDAAQREARELETELFKLKNELEELQEQLEELERENKQLQDELED-------LTSQ 448 (859)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred HHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHhhcc-------chhh
Confidence 333222 456666777776665555554444433 4444444444445555555555544433 2234
Q ss_pred hhhhHhhHHHHHHHHHHHHHHHHHHhHHHhHhhHhHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHhhhHHHHHHHHHHHH
Q 003570 341 CIESLATIKELESQSERLEDKIKQQSEEYSESLISINELECQVKELKRELDKQAQEFEDDIDAVTHAKTEQEQRAIRAEE 420 (810)
Q Consensus 341 cS~~~~~i~eLe~qve~LE~eLk~q~~efSesL~tI~eLE~qv~sLeeEl~~Qaq~fe~Dldam~~~k~EQEqRAi~AEe 420 (810)
++..-.++.+|+..+.+||.++.++...+-+.-..+...|..+-.|+-+|+ ..+.+.+++...-++
T Consensus 449 ~~~~~k~v~eLek~kr~LE~e~~El~~~leE~E~~l~~~E~~~lRl~~el~--------------~~r~e~er~l~eKee 514 (859)
T PF01576_consen 449 LDDAGKSVHELEKAKRRLEQEKEELQEQLEEAEDALEAEEQKKLRLQVELQ--------------QLRQEIERELQEKEE 514 (859)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred hhhhccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--------------HHHHHHHHHHHhhhh
Confidence 555566788899999999999888887777766666666666655554443 233444444444445
Q ss_pred HHHHHhhhhhhhHHHHHHHHHHHHHHhhhhhhhhHHHH-HHHHHHHHHHHhhHHHHHHHHHHhHHHHhhhhhhhhccHHH
Q 003570 421 ELRKTRWKNTVTAERLQDEFRRLSVDMASKFDENEKLA-MKAMTEANEQRMQKAHLEEMLQKANDELSLIKDQNGVKLQE 499 (810)
Q Consensus 421 aLrKtR~~na~taErLQeEf~~LS~qmsSt~eeNEklt-~kA~~EaseLR~qk~~LEemLqk~neeL~~i~dq~e~kl~e 499 (810)
-+-.+|-+. |+.|+.|-.++ + .|.-. ..|+..-..|..+..-|+..|..+|- ...+
T Consensus 515 E~E~~Rr~~-------qr~l~~le~~L----E-~E~k~r~~~~r~kkKLE~~l~eLe~~ld~~n~-----------~~~e 571 (859)
T PF01576_consen 515 EFEETRRNH-------QRQLESLEAEL----E-EERKERAEALREKKKLESDLNELEIQLDHANR-----------ANEE 571 (859)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred HHHHHHHhh-------HHHHHHHHhHH----H-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhH-----------hHHH
Confidence 555566554 44444444433 1 22222 12333333344444444433332221 1112
Q ss_pred HhHHHhhHHHHHHHHHHhhhhchhhhhHHhhhHHHHH---HhHHHHHHHHHHHHHHHHHhhhhhhhcc--cccCCCCCCc
Q 003570 500 LSDQLEQKDKQIQKMYLELDHSSSQLIDEHKSEAQKH---EALSTEIHMLRTEIEKLRKEQYNLSEHG--KRRDDNKPKV 574 (810)
Q Consensus 500 L~~qld~k~k~ie~m~~Ele~kS~qle~~kk~~ee~~---~a~s~EI~~Lk~eie~L~~e~~~l~e~~--~~~d~e~~k~ 574 (810)
+..++.--..+|..+...+++ ..+..++.. ...-..+..|.++++.+..........- ...++..+..
T Consensus 572 ~~k~~kk~q~qlkdlq~~lee-------~~~~~~~~~~~~~~~e~r~~~l~~elee~~~~~~~a~r~rk~aE~el~e~~~ 644 (859)
T PF01576_consen 572 AQKQLKKLQAQLKDLQRELEE-------AQRAREELREQLAVSERRLRALQAELEELREALEQAERARKQAESELDELQE 644 (859)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred HHHHHHHHHHHHHHHhhhhHH-------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 233333333333333333333 333333222 2233445555555555554333321111 2222222222
Q ss_pred ccchhhHHHhhhhhhhhhHHHHHHHHHHHHHHHHHHHHhhhccCchhHHHHhhHHHHHHHHHHHHHHHHhhhhHHHHHhh
Q 003570 575 STGETDMLIQKWNRERDDLEKKFASAKQEAAKAHEELISMRSLKGENEMLIGNLQAEVENLKVQQNKLQNSLIEEKLEKD 654 (810)
Q Consensus 575 s~~e~~~~lq~~~~er~el~~~~a~~kkeae~~~~EL~~m~~~kdEkE~~i~~LqsE~e~lk~Q~~~LK~sL~~ee~EKe 654 (810)
.+.+....-..-..++.-|+..|+-+..+.+-...++.. =+..++..+.++..|..+...-+.....-+..|-
T Consensus 645 ~~~~l~~~~~~l~~~kr~le~~i~~l~~eleE~~~~~~~-------~~ek~kka~~~~~~l~~eL~~Eq~~~~~le~~k~ 717 (859)
T PF01576_consen 645 RLNELTSQNSSLSEEKRKLEAEIQQLEEELEEEQSEAEA-------AEEKAKKAQAQAAQLAEELRQEQDHNQHLEKEKK 717 (859)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred HHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHhHhHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 222222222222233344455555554444333322221 1223445555555555555555555555666777
Q ss_pred HHHHHHHHHHHHHHhhH
Q 003570 655 NLAKQVFQLKDELQKKK 671 (810)
Q Consensus 655 ~l~kQv~qLk~eL~KKe 671 (810)
+|..||-.|+..|.--|
T Consensus 718 ~LE~q~keLq~rl~e~E 734 (859)
T PF01576_consen 718 ALERQVKELQARLEEAE 734 (859)
T ss_dssp -----------------
T ss_pred HHHHHHHHHHHHHHHHH
Confidence 77777777666654433
No 31
>KOG0996 consensus Structural maintenance of chromosome protein 4 (chromosome condensation complex Condensin, subunit C) [Chromatin structure and dynamics; Cell cycle control, cell division, chromosome partitioning]
Probab=97.90 E-value=0.068 Score=65.80 Aligned_cols=334 Identities=22% Similarity=0.322 Sum_probs=204.4
Q ss_pred HHHHHHhhccCchhhHHHHHHHHHhh-------hHHHHhhhhHHHHHHHHHHHHHHHHHHHhhhhhh--hhHHHHHHHHh
Q 003570 264 ALEALAKERNKDKEVDMLKQKIRDQG-------DEIQFFKKHAEDLEIYIKQLTEDCQVLEQENQCL--TSKLEKIQQQE 334 (810)
Q Consensus 264 ale~Lvke~~~~~E~~~LkqKI~DL~-------~Eie~ykkerEeLe~~ieQL~~D~E~LkqEN~~l--s~kLEq~q~Qe 334 (810)
-|+++++....---+..+-+++..|. .-...+.+++..|+.-+.. -.+.|+.+|--. ..++-|
T Consensus 255 YLEDIIGT~ry~~~I~~~~~rv~~L~e~~sek~~~~k~~e~ek~~lE~~k~~---al~fL~kenel~~~~~~~~q----- 326 (1293)
T KOG0996|consen 255 YLEDIIGTNRYKEPIEELMRRVERLNEDRSEKENRVKLVEKEKKALEGPKNE---ALEFLKKENELFRKKNKLCQ----- 326 (1293)
T ss_pred HHHHHhcccccchhHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHhhhHHH---HHHHHHHHHHHHHHHHHHHH-----
Confidence 46677777766666666666666663 2445555777777654432 123344444322 223333
Q ss_pred hhhhhhhhhhHhhHHHHHHHHHHHHHHHHHHhHHHh-HhhHhHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHhhhHHHHH
Q 003570 335 SMKSRECIESLATIKELESQSERLEDKIKQQSEEYS-ESLISINELECQVKELKRELDKQAQEFEDDIDAVTHAKTEQEQ 413 (810)
Q Consensus 335 ql~~~EcS~~~~~i~eLe~qve~LE~eLk~q~~efS-esL~tI~eLE~qv~sLeeEl~~Qaq~fe~Dldam~~~k~EQEq 413 (810)
+.+|+ +.+-|.........++..|+.-...|- ++-..+...+++- +++.+.+.....++.++.....+.+.
T Consensus 327 -~~~~~---~~~ki~~~~~~~~~~~e~lk~~~ek~~~e~~~~~~k~e~~~----~~~~e~~~~~kn~~~~~k~~~~~~e~ 398 (1293)
T KOG0996|consen 327 -YILYE---SRAKIAEMQEELEKIEEGLKDENEKFDIESNEEVEKNEAVK----KEIKERAKELKNKFESLKKKFQDLER 398 (1293)
T ss_pred -HHHHH---HHHHHHHHHHHHHHHHhHHHHHHHHhhhhhhHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 22233 556777777888888999988888887 6666666666553 34555666667777788888888877
Q ss_pred HHHHHHHHHHHHhhhhhhhHHHHHHHHHHHHHHhhhhhhhhHHHHHHHHHHHHHHHhhHHHHHHHHHHhHHHHhhhhhhh
Q 003570 414 RAIRAEEELRKTRWKNTVTAERLQDEFRRLSVDMASKFDENEKLAMKAMTEANEQRMQKAHLEEMLQKANDELSLIKDQN 493 (810)
Q Consensus 414 RAi~AEeaLrKtR~~na~taErLQeEf~~LS~qmsSt~eeNEklt~kA~~EaseLR~qk~~LEemLqk~neeL~~i~dq~ 493 (810)
+-.+-++.|...- .-...|.+++...+. +.++-|++--+|-.+...+-.....|+..+.+++.+|.-+++-+
T Consensus 399 ~~vk~~E~lK~~~----~k~kKleke~ek~~~----~~~e~e~~pe~~~~~i~~~~~ei~~L~~~~~~~~~~l~e~~~~l 470 (1293)
T KOG0996|consen 399 EDVKREEKLKRLT----SKIKKLEKEIEKARR----KKSELEKAPEKARIEIQKCQTEIEQLEELLEKEERELDEILDSL 470 (1293)
T ss_pred HHHHHHHHHHHHH----HHHHHHHHHHHHHHh----hHHHHHhCchhhHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 7766666665431 224455555555444 45667778888888888888899999999999999999999988
Q ss_pred hccHHHHhHHHhhHHHHHHHHHHhhhhchhhhhHHhhhHHHHHHhHHHHHHHHHHHHHHHHHhhhhhhhcccccCCCCCC
Q 003570 494 GVKLQELSDQLEQKDKQIQKMYLELDHSSSQLIDEHKSEAQKHEALSTEIHMLRTEIEKLRKEQYNLSEHGKRRDDNKPK 573 (810)
Q Consensus 494 e~kl~eL~~qld~k~k~ie~m~~Ele~kS~qle~~kk~~ee~~~a~s~EI~~Lk~eie~L~~e~~~l~e~~~~~d~e~~k 573 (810)
..+.+-++..+....+.+...+..+-.... ....+.-|..+|...-+.+.. .++.+|
T Consensus 471 ~~~t~~~~~e~~~~ekel~~~~~~~n~~~~-----------e~~vaesel~~L~~~~~~~~~------------~~e~lk 527 (1293)
T KOG0996|consen 471 KQETEGIREEIEKLEKELMPLLKQVNEARS-----------ELDVAESELDILLSRHETGLK------------KVEELK 527 (1293)
T ss_pred hhhhhhhHHHHHHHHHHHHHHHHHHHHHHH-----------HHHHHHHHHHHHHHHHHHHHH------------HHHHHH
Confidence 888888888777777666655332221111 112333333333333322222 223333
Q ss_pred cccchhhHHHhhhhhhhhhHHHHHHHHHHHHHHHHHHHHhhhccCchhHHHHhhHHHHHHHHHHHHHHHHhhhhHHHH
Q 003570 574 VSTGETDMLIQKWNRERDDLEKKFASAKQEAAKAHEELISMRSLKGENEMLIGNLQAEVENLKVQQNKLQNSLIEEKL 651 (810)
Q Consensus 574 ~s~~e~~~~lq~~~~er~el~~~~a~~kkeae~~~~EL~~m~~~kdEkE~~i~~LqsE~e~lk~Q~~~LK~sL~~ee~ 651 (810)
.++......+.....+.+.+...|.++|.|....-.+|..++ .-.++|.+.+-.++....++|.+++..-.
T Consensus 528 ~~L~~~~~~~~e~~~~l~~~k~~l~~~k~e~~~~~k~l~~~~-------~e~~~~~~~~~~~rqrveE~ks~~~~~~s 598 (1293)
T KOG0996|consen 528 GKLLASSESLKEKKTELDDLKEELPSLKQELKEKEKELPKLR-------KEERNLKSQLNKLRQRVEEAKSSLSSSRS 598 (1293)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHhHHHHH-------HHHHHHHHHHHHHHHHHHHHHHHHHhhhh
Confidence 344444445555556666666666666666655555555544 23356666677777777777777765543
No 32
>KOG0933 consensus Structural maintenance of chromosome protein 2 (chromosome condensation complex Condensin, subunit E) [Chromatin structure and dynamics; Cell cycle control, cell division, chromosome partitioning]
Probab=97.84 E-value=0.17 Score=61.80 Aligned_cols=337 Identities=20% Similarity=0.243 Sum_probs=220.5
Q ss_pred HHHHHhhhHHHHhhhhHHHHHHHHHHHHHHHHHHHhhhhhhhhHHHH-HHHHhhhhhhhhhhhHhhHHHHHHHHHHHHHH
Q 003570 283 QKIRDQGDEIQFFKKHAEDLEIYIKQLTEDCQVLEQENQCLTSKLEK-IQQQESMKSRECIESLATIKELESQSERLEDK 361 (810)
Q Consensus 283 qKI~DL~~Eie~ykkerEeLe~~ieQL~~D~E~LkqEN~~ls~kLEq-~q~Qeql~~~EcS~~~~~i~eLe~qve~LE~e 361 (810)
+++.+.-.+|....++.+.++.+|+-|.--..-+++-+..|..++.. +.+...+.-++..-.+..+..+..-|+-++++
T Consensus 677 ~~l~~~~~~~~~~q~el~~le~eL~~le~~~~kf~~l~~ql~l~~~~l~l~~~r~~~~e~~~~~~~~~~~~e~v~e~~~~ 756 (1174)
T KOG0933|consen 677 QKLKQAQKELRAIQKELEALERELKSLEAQSQKFRDLKQQLELKLHELALLEKRLEQNEFHKLLDDLKELLEEVEESEQQ 756 (1174)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcChHhhHHHHHHHHHHHHHHHHHH
Confidence 56666778999999999999999998887766666666666555543 23344334478888899999999999999999
Q ss_pred HHHHhHHHhHhhHhHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHhhhHHHHHHHHHHHHHHHHHhhhh---hhhHHHHHH
Q 003570 362 IKQQSEEYSESLISINELECQVKELKRELDKQAQEFEDDIDAVTHAKTEQEQRAIRAEEELRKTRWKN---TVTAERLQD 438 (810)
Q Consensus 362 Lk~q~~efSesL~tI~eLE~qv~sLeeEl~~Qaq~fe~Dldam~~~k~EQEqRAi~AEeaLrKtR~~n---a~taErLQe 438 (810)
|++...-+-+|-..|+-||..++.-..+-+.....+...|....+...++.. -+.+.+-.+ -.++|.|+.
T Consensus 757 Ike~~~~~k~~~~~i~~lE~~~~d~~~~re~rlkdl~keik~~k~~~e~~~~-------~~ek~~~e~e~l~lE~e~l~~ 829 (1174)
T KOG0933|consen 757 IKEKERALKKCEDKISTLEKKMKDAKANRERRLKDLEKEIKTAKQRAEESSK-------ELEKRENEYERLQLEHEELEK 829 (1174)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhHhhhhhHhHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHH
Confidence 9999999999999999999998887776666666565555544333222222 222222211 234555555
Q ss_pred HHHHHHHHhhhhhhhhHHHHHHHHHHHHHHHhhHHHHHHHHHHhHHHHhhhhhhhhccHHHHhHHHhhHHHHHHHHHHhh
Q 003570 439 EFRRLSVDMASKFDENEKLAMKAMTEANEQRMQKAHLEEMLQKANDELSLIKDQNGVKLQELSDQLEQKDKQIQKMYLEL 518 (810)
Q Consensus 439 Ef~~LS~qmsSt~eeNEklt~kA~~EaseLR~qk~~LEemLqk~neeL~~i~dq~e~kl~eL~~qld~k~k~ie~m~~El 518 (810)
+...+-.++.+. ++-+..-.+|...|++-....+....++.++|..+++ ++-+..++|+.-...++.++.|.
T Consensus 830 e~~~~k~~l~~~----~~~~~~l~~e~~~l~~kv~~~~~~~~~~~~el~~~k~----k~~~~dt~i~~~~~~~e~~~~e~ 901 (1174)
T KOG0933|consen 830 EISSLKQQLEQL----EKQISSLKSELGNLEAKVDKVEKDVKKAQAELKDQKA----KQRDIDTEISGLLTSQEKCLSEK 901 (1174)
T ss_pred HHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHhHHhHHHHHHHHHHHHHH----HHHhhhHHHhhhhhHHHHHHHHh
Confidence 555555555444 4445555678888898888888888888888877544 66677777765555555554443
Q ss_pred ---hhchhhhhHHhhhHHHHHHhHHHHHHHHHHHHHHHHHhhhhhhhcccccCCCCCCcccchhhHHHhhhhhhhhhHHH
Q 003570 519 ---DHSSSQLIDEHKSEAQKHEALSTEIHMLRTEIEKLRKEQYNLSEHGKRRDDNKPKVSTGETDMLIQKWNRERDDLEK 595 (810)
Q Consensus 519 ---e~kS~qle~~kk~~ee~~~a~s~EI~~Lk~eie~L~~e~~~l~e~~~~~d~e~~k~s~~e~~~~lq~~~~er~el~~ 595 (810)
+.+.+.|++--..=+.-..+.+.+|.-|..+++-|..+.+++-.++-.=|++---
T Consensus 902 ~~~~l~~kkle~e~~~~~~e~~~~~k~v~~l~~k~~wi~~ek~~fgk~gt~yDf~~~~---------------------- 959 (1174)
T KOG0933|consen 902 SDGELERKKLEHEVTKLESEKANARKEVEKLLKKHEWIGDEKRLFGKKGTDYDFESYD---------------------- 959 (1174)
T ss_pred hcccchHHHHHhHHHHhhhhHHHHHHHHHHHHHhccchhHHHHhhcCCCCccccccCC----------------------
Confidence 3344455544444444566788888889899988888888888888666665421
Q ss_pred HHHHHHHHHHHHHHHHHhhhccCchhHHHHh-hHHHHHHHHHHHHHHHHhhhhHHHHHhhHHHHHHHHHH
Q 003570 596 KFASAKQEAAKAHEELISMRSLKGENEMLIG-NLQAEVENLKVQQNKLQNSLIEEKLEKDNLAKQVFQLK 664 (810)
Q Consensus 596 ~~a~~kkeae~~~~EL~~m~~~kdEkE~~i~-~LqsE~e~lk~Q~~~LK~sL~~ee~EKe~l~kQv~qLk 664 (810)
+-.+.++|..|..-+...+..+. +-..=++....-|++|+.---.=+..|.++++-|..|-
T Consensus 960 --------p~~are~l~~Lq~k~~~l~k~vn~~~m~mle~~E~~~~~lk~k~~~Ie~Dk~kI~ktI~~lD 1021 (1174)
T KOG0933|consen 960 --------PHEAREELKKLQEKKEKLEKTVNPKNMDMLERAEEKEAALKTKKEIIEKDKSKIKKTIEKLD 1021 (1174)
T ss_pred --------HhHHHHHHHHhhHHHHHHHhhcCHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHH
Confidence 11223333333332222222221 23344556667777777776666677778888887774
No 33
>KOG4673 consensus Transcription factor TMF, TATA element modulatory factor [Transcription]
Probab=97.66 E-value=0.25 Score=58.56 Aligned_cols=312 Identities=19% Similarity=0.242 Sum_probs=181.3
Q ss_pred HhhHHHHHHHHHHHHHHHH--HHhHHHhHhhHhHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHhhhHHHHHHH-------
Q 003570 345 LATIKELESQSERLEDKIK--QQSEEYSESLISINELECQVKELKRELDKQAQEFEDDIDAVTHAKTEQEQRA------- 415 (810)
Q Consensus 345 ~~~i~eLe~qve~LE~eLk--~q~~efSesL~tI~eLE~qv~sLeeEl~~Qaq~fe~Dldam~~~k~EQEqRA------- 415 (810)
+++.+++.+- .++++.|+ ..+.+++.-...|..|--.+..-++...-..+.|-.++..+++--.+-|.|+
T Consensus 557 qat~d~a~~D-lqk~nrlkQdear~~~~~lvqqv~dLR~~L~~~Eq~aarrEd~~R~Ei~~LqrRlqaaE~R~eel~q~v 635 (961)
T KOG4673|consen 557 QATNDEARSD-LQKENRLKQDEARERESMLVQQVEDLRQTLSKKEQQAARREDMFRGEIEDLQRRLQAAERRCEELIQQV 635 (961)
T ss_pred HHhhhhhhhh-HHHHhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhc
Confidence 4455555542 23455666 6777888888888888888888888888888999999999888877777775
Q ss_pred -------HHHHHHHHHHhhhhhhhHHHHHHHH-HHHH------------------------HHhhhhhhhhHHHHHHHHH
Q 003570 416 -------IRAEEELRKTRWKNTVTAERLQDEF-RRLS------------------------VDMASKFDENEKLAMKAMT 463 (810)
Q Consensus 416 -------i~AEeaLrKtR~~na~taErLQeEf-~~LS------------------------~qmsSt~eeNEklt~kA~~ 463 (810)
+|-=++|-.|--.-+.+-+|+.+-+ .+|+ ++|.|+---
T Consensus 636 ~~TTrPLlRQIE~lQ~tl~~~~tawereE~~l~~rL~dSQtllr~~v~~eqgekqElL~~~~~l~s~~~q---------- 705 (961)
T KOG4673|consen 636 PETTRPLLRQIEALQETLSKAATAWEREERSLNERLSDSQTLLRINVLEEQGEKQELLSLNFSLPSSPIQ---------- 705 (961)
T ss_pred cccccHHHHHHHHHHHHHhhhhhHHHHHHHHHHHhhhhHHHHHHHHHHHHhhhHHHHHHHhcCCCcchhH----------
Confidence 3444556655555555555543221 2222 222221110
Q ss_pred HHHHHHhhHHHHHHHHH--------------HhHHHHhhhhhhhhccHHHHhHHHhh---HHHHHHHHHHhhhhchhhhh
Q 003570 464 EANEQRMQKAHLEEMLQ--------------KANDELSLIKDQNGVKLQELSDQLEQ---KDKQIQKMYLELDHSSSQLI 526 (810)
Q Consensus 464 EaseLR~qk~~LEemLq--------------k~neeL~~i~dq~e~kl~eL~~qld~---k~k~ie~m~~Ele~kS~qle 526 (810)
.+=||+.+..|-..|. -+.+|+...++.|- .++.+...+.. -..|+..|-+|+..|+-.++
T Consensus 706 -~sllraE~~~l~~~le~e~nr~~~~~~e~~~~qeE~~~l~~r~~-~le~e~r~~k~~~~q~lq~~ll~ve~~~k~~e~~ 783 (961)
T KOG4673|consen 706 -LSLLRAEQGQLSKSLEKERNRAAENRQEYLAAQEEADTLEGRAN-QLEVEIRELKRKHKQELQEVLLHVELIQKDLERE 783 (961)
T ss_pred -HHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHhhHHHHHHHHHHHHhhhC
Confidence 1122333333222222 23334444333332 22222222211 12345566666666666665
Q ss_pred HHhhhHHHHHHh--------------HHHHHHHHHHHHHHHHHhhhhhhhcc-cc--------cCCCCC---Ccccchhh
Q 003570 527 DEHKSEAQKHEA--------------LSTEIHMLRTEIEKLRKEQYNLSEHG-KR--------RDDNKP---KVSTGETD 580 (810)
Q Consensus 527 ~~kk~~ee~~~a--------------~s~EI~~Lk~eie~L~~e~~~l~e~~-~~--------~d~e~~---k~s~~e~~ 580 (810)
.+-+.+-++--+ ...||-.+.+-. +.+.+|..- +- .++--+ -+-+++.+
T Consensus 784 ~~~~~~lers~a~i~Ssp~~s~~~SgSnee~ag~~~~f-----~~dd~s~~~s~gqq~~~~~~~hl~~~~~nttt~eh~e 858 (961)
T KOG4673|consen 784 KASRLDLERSTARINSSPVSSQLPSGSNEEIAGQNSAF-----ENDDFSEKRSMGQQEATMSPYHLKSITPNTTTSEHYE 858 (961)
T ss_pred HHHHhhcccccCccCCCCchhhCCCCchHhHhcccchh-----hccchhhhhcCCCCCcccchhHHhhhcCCCchHHHHH
Confidence 544433332100 011222111111 011111111 00 000000 01256899
Q ss_pred HHHhhhhhhhhhHHHHHHHHHHHHHHHHHHHHhhhccCc---hhHHHHhhHHHHHHHHHHHHHHHHhhhhHHHHHhhHHH
Q 003570 581 MLIQKWNRERDDLEKKFASAKQEAAKAHEELISMRSLKG---ENEMLIGNLQAEVENLKVQQNKLQNSLIEEKLEKDNLA 657 (810)
Q Consensus 581 ~~lq~~~~er~el~~~~a~~kkeae~~~~EL~~m~~~kd---EkE~~i~~LqsE~e~lk~Q~~~LK~sL~~ee~EKe~l~ 657 (810)
+++..+.-|+.-|.-.|+.+.+.---.-+||-+|+.-.+ ||-.++-.+..+++.|+-.|+-+=...-+..-|-|.|+
T Consensus 859 all~QreGElthlq~e~~~le~~Rs~laeElvklT~e~e~l~ek~~~~p~~~~~ledL~qRy~a~LqmyGEk~Ee~EELr 938 (961)
T KOG4673|consen 859 ALLRQREGELTHLQTELASLESIRSSLAEELVKLTAECEKLREKADRVPGIKAELEDLRQRYAAALQMYGEKDEELEELR 938 (961)
T ss_pred HHHHhhcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHhcchHHHHHHHH
Confidence 999999999999999999998888888888888776443 56678888999999999999999888888888899999
Q ss_pred HHHHHHHHHHHhhHHHH
Q 003570 658 KQVFQLKDELQKKKEEI 674 (810)
Q Consensus 658 kQv~qLk~eL~KKe~~~ 674 (810)
--+..||.-.+--=|++
T Consensus 939 lDl~dlK~mYk~QIdeL 955 (961)
T KOG4673|consen 939 LDLVDLKEMYKEQIDEL 955 (961)
T ss_pred hhHHHHHHHHHHHHHHH
Confidence 88888887766554444
No 34
>KOG0978 consensus E3 ubiquitin ligase involved in syntaxin degradation [Posttranslational modification, protein turnover, chaperones]
Probab=97.60 E-value=0.3 Score=58.00 Aligned_cols=263 Identities=22% Similarity=0.231 Sum_probs=135.8
Q ss_pred HHHHHHHHHhhhhhhcchhhhhhhhhhhhhhHHHHHHHHHHHHHHHHhhhhhhhhhhhhhhhhhhhhhHHHHHHHHhhcc
Q 003570 194 FLQEEIREELNYEKEVSAHLRLQLEKTQDSNAELILAVKDLNEMLEQKNMEISSLSSKLEESKLVREDQLALEALAKERN 273 (810)
Q Consensus 194 ~llEElr~EL~yEKelNaNL~LQLqKTQESNsELilAVqDLeeMLEqKn~EIs~ls~~~~e~~~~~edq~ale~Lvke~~ 273 (810)
.-++++++++.--+.++.++..-|.+.|.-+.+++.-+.++..-|.+-+..-...+-.+.+ .+ ..+.+-...+
T Consensus 146 t~~~~l~~~iee~~~~~~~~~~ele~lq~~~~~~~~~~~~~~~~l~~~~~~~~~~~~e~~~------~~-~NE~l~~~~~ 218 (698)
T KOG0978|consen 146 TELEELRDEIEELRELASTRMEELEKLQLYSDEILRQLDRFRVELRSLKEKVRSETFELRC------LQ-YNEELQRKTM 218 (698)
T ss_pred hhhhhhccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHH------HH-hhhhcccccc
Confidence 5789999999999999999999888888887777777766655553332222222222221 11 2333333332
Q ss_pred Cchh------hHHHHHHHHHhhhHHHHhhhhHHHHHHHHHHHHHHHHHHHhhhhhhhhHHHHHHHHhhhh-h-hhhhhhH
Q 003570 274 KDKE------VDMLKQKIRDQGDEIQFFKKHAEDLEIYIKQLTEDCQVLEQENQCLTSKLEKIQQQESMK-S-RECIESL 345 (810)
Q Consensus 274 ~~~E------~~~LkqKI~DL~~Eie~ykkerEeLe~~ieQL~~D~E~LkqEN~~ls~kLEq~q~Qeql~-~-~EcS~~~ 345 (810)
..++ +..|..+..-.-.+-+..+.+.+..-...++ -..+..+=--|++.+....-+ |+ + .+.-...
T Consensus 219 ~~~e~~~~~~~~~lee~~~~~~~e~~~l~~~~e~~~~~~~~----~~~in~e~~~L~Ssl~e~~~~--l~~~~~~~k~t~ 292 (698)
T KOG0978|consen 219 ESDEAINSKKVIKLEEKLAQCVKEYEMLRKEFENNKSQNDL----FSSINREMRHLISSLQEHEKL--LKEYERELKDTE 292 (698)
T ss_pred hhhhhhccchHHHHHHHHHHHHHHHHHHHHhHHHhHHhhhh----hhhHHHHHHHHHHHHHHHHHH--HHHHHHHHhccc
Confidence 2222 2333333333333333333333333222222 112222222345555443322 23 3 5556667
Q ss_pred hhHHHHHHHHHHHHHHHHHHhHHHhHhhHhHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHhhhHHH---HHHHHHHHHHH
Q 003570 346 ATIKELESQSERLEDKIKQQSEEYSESLISINELECQVKELKRELDKQAQEFEDDIDAVTHAKTEQ---EQRAIRAEEEL 422 (810)
Q Consensus 346 ~~i~eLe~qve~LE~eLk~q~~efSesL~tI~eLE~qv~sLeeEl~~Qaq~fe~Dldam~~~k~EQ---EqRAi~AEeaL 422 (810)
..+..|+++...+...+-.....++.-+..+..+=+++.++.+-+......-...+.-.++...++ ++....|...+
T Consensus 293 ~~~~~lr~~~~s~~~~~~~~~~~~e~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~k~~di~~~k~el 372 (698)
T KOG0978|consen 293 SDNLKLRKQHSSAADSLESKSRDLESLLDKIQDLISQEAELSKKLRSKLLESAKKLKILLREKDRESQKERDILVAKSEL 372 (698)
T ss_pred chHHHHHHHHHHHHhhccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHhhhhHhHHHHHHHH
Confidence 778888888888877777777777777777777767766666533322222222222222211111 22334444445
Q ss_pred HHHhhhhhhhHHHHHHHHHHHHHHhhhhhhhhHHHHHHHHHHHHHHHhhHHHHHHHHHHh
Q 003570 423 RKTRWKNTVTAERLQDEFRRLSVDMASKFDENEKLAMKAMTEANEQRMQKAHLEEMLQKA 482 (810)
Q Consensus 423 rKtR~~na~taErLQeEf~~LS~qmsSt~eeNEklt~kA~~EaseLR~qk~~LEemLqk~ 482 (810)
.++ +.-+=+.++.++..-.. ++=++|.+|+..++.+...+.++-...
T Consensus 373 ~~~-------~~~~le~~k~~~ke~~~------~~~~ka~~E~e~l~q~l~~~~k~e~~e 419 (698)
T KOG0978|consen 373 LKT-------NELRLEMLKSLLKEQRD------KLQVKARAETESLLQRLKALDKEERSE 419 (698)
T ss_pred HHH-------HHHHHHHHhCCCHHHHh------HHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 444 22222233333322222 222678888888888888777665443
No 35
>PF05622 HOOK: HOOK protein; InterPro: IPR008636 This family consists of several HOOK1, 2 and 3 proteins from different eukaryotic organisms. The different members of the Homo sapiens gene family are HOOK1, HOOK2 and HOOK3. Different domains have been identified in the three Homo sapiens HOOK proteins, and it was demonstrated that the highly conserved NH2-domain mediates attachment to microtubules, whereas the central coiled-coil motif mediates homodimerisation and the more divergent C-terminal domains are involved in binding to specific organelles (organelle-binding domains). It has been demonstrated that endogenous HOOK3 binds to Golgi membranes [], whereas both HOOK1 and HOOK2 are localised to discrete but unidentified cellular structures. In mice the Hook1 gene is predominantly expressed in the testis. Hook1 function is necessary for the correct positioning of microtubular structures within the haploid germ cell. Disruption of Hook1 function in mice causes abnormal sperm head shape and fragile attachment of the flagellum to the sperm head [].; GO: 0008017 microtubule binding, 0000226 microtubule cytoskeleton organization, 0005737 cytoplasm; PDB: 1WIX_A.
Probab=97.54 E-value=1.8e-05 Score=91.39 Aligned_cols=202 Identities=27% Similarity=0.315 Sum_probs=0.0
Q ss_pred hhHHHHHHhhHHhhhHHHHHHHHhhhhhhhhHHHHhhhhhhhhhhHHHHHHHHHHhhhhhhcchhhhhhhhhhhhhhHHH
Q 003570 148 QDQTRQIISLSSERDALTIECEQLRKQNSIDIAEIERRLQSEEHLKFLQEEIREELNYEKEVSAHLRLQLEKTQDSNAEL 227 (810)
Q Consensus 148 qdLsrEv~~lk~ERD~Lk~EcEqLksqk~~~ea~~~~~lq~e~D~~~llEElr~EL~yEKelNaNL~LQLqKTQESNsEL 227 (810)
.+|..+|..|.+|++.|..+++.|.....-.+..+. ++.. +-.--.+.|+-|+...++-+-++
T Consensus 196 ~el~~~i~~L~~e~~~L~~e~~~l~~~~~~~~~~~~-------~~~~----------~~~~~~~~l~~ql~~L~~el~~~ 258 (713)
T PF05622_consen 196 HELEKQISDLQEEKESLQSENEELQERLSQLEGSSE-------EPSQ----------HLSVELADLRAQLRRLREELERL 258 (713)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred HHHHHHHHHHHHhHHHhhhhhhhhhcccCCCCCCCC-------Ccch----------HHHHHHHHHHHHHHHHHHHHHHH
Confidence 478888888888888888888877662211110000 1100 00011345666677777767777
Q ss_pred HHHHHHHHHHHHHhhhhhhhhhhhhhhhhhhhhhHHHHHHHHhhc-cCchhhHHHHHHHHHh---hhHHHHhh---hhHH
Q 003570 228 ILAVKDLNEMLEQKNMEISSLSSKLEESKLVREDQLALEALAKER-NKDKEVDMLKQKIRDQ---GDEIQFFK---KHAE 300 (810)
Q Consensus 228 ilAVqDLeeMLEqKn~EIs~ls~~~~e~~~~~edq~ale~Lvke~-~~~~E~~~LkqKI~DL---~~Eie~yk---kerE 300 (810)
--+..|+..-++....+|..|.....+. ...+.+. .--+|++.|+++-..+ -.+++.|| .+..
T Consensus 259 e~~~~d~~~~~e~le~ei~~L~q~~~eL----------~~~A~~a~~LrDElD~lR~~a~r~~klE~~ve~YKkKLed~~ 328 (713)
T PF05622_consen 259 EEQRDDLKIELEELEKEIDELRQENEEL----------QAEAREARALRDELDELREKADRADKLENEVEKYKKKLEDLE 328 (713)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH----------HHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 7777888888888888888776544431 1122221 1236888888866654 56999999 5667
Q ss_pred HHHHHHHHHHHHHHHHHhhhhhhhhHHHHHHHHhhhhhhhhhhhHhhHHHHHHHHHHHHHHHHHHhHHHhHhhHhHHHHH
Q 003570 301 DLEIYIKQLTEDCQVLEQENQCLTSKLEKIQQQESMKSRECIESLATIKELESQSERLEDKIKQQSEEYSESLISINELE 380 (810)
Q Consensus 301 eLe~~ieQL~~D~E~LkqEN~~ls~kLEq~q~Qeql~~~EcS~~~~~i~eLe~qve~LE~eLk~q~~efSesL~tI~eLE 380 (810)
.|..+++.|..++.+|-+-+..+-..|.. +.+.-+-+..++.+|..|+.++..-..+.-.-...+..|+
T Consensus 329 ~lk~qvk~Lee~N~~l~e~~~~LEeel~~-----------~~~~~~qle~~k~qi~eLe~~l~~~~~~~~~l~~e~~~L~ 397 (713)
T PF05622_consen 329 DLKRQVKELEEDNAVLLETKAMLEEELKK-----------ARALKSQLEEYKKQIQELEQKLSEESRRADKLEFENKQLE 397 (713)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH-----------hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 78888999998888888755544322222 3334455566666666666666555544433334444444
Q ss_pred HHHHHHH
Q 003570 381 CQVKELK 387 (810)
Q Consensus 381 ~qv~sLe 387 (810)
..+..|+
T Consensus 398 ek~~~l~ 404 (713)
T PF05622_consen 398 EKLEALE 404 (713)
T ss_dssp -------
T ss_pred HHHHHHH
Confidence 4444443
No 36
>COG0419 SbcC ATPase involved in DNA repair [DNA replication, recombination, and repair]
Probab=97.28 E-value=0.77 Score=55.36 Aligned_cols=54 Identities=30% Similarity=0.478 Sum_probs=38.9
Q ss_pred hhhhhhHhhHHHHHHHHHHHHHHHHHHhHHHhHhhHhHHHHHHHHHHHHHHHHH
Q 003570 339 RECIESLATIKELESQSERLEDKIKQQSEEYSESLISINELECQVKELKRELDK 392 (810)
Q Consensus 339 ~EcS~~~~~i~eLe~qve~LE~eLk~q~~efSesL~tI~eLE~qv~sLeeEl~~ 392 (810)
.+++..+..+..+...++.+..++......|-++...+.+++..++.+...+..
T Consensus 375 ~~~~~~le~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~l~~ 428 (908)
T COG0419 375 KELEKALERLKQLEEAIQELKEELAELSAALEEIQEELEELEKELEELERELEE 428 (908)
T ss_pred HHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 556666677777777777777888887777777777777777766666655543
No 37
>PF05701 WEMBL: Weak chloroplast movement under blue light; InterPro: IPR008545 This family consists of several plant proteins of unknown function. Several sequences in this family are described as being myosin heavy chain-like.
Probab=97.25 E-value=0.6 Score=53.46 Aligned_cols=71 Identities=21% Similarity=0.242 Sum_probs=41.3
Q ss_pred CCCCCcccchhhHHHhhhhhhhhhHHHHHHHHHHHHHHHHHHHHhhhccCchhHHHHhhHHHHHHHHHHHH
Q 003570 569 DNKPKVSTGETDMLIQKWNRERDDLEKKFASAKQEAAKAHEELISMRSLKGENEMLIGNLQAEVENLKVQQ 639 (810)
Q Consensus 569 ~e~~k~s~~e~~~~lq~~~~er~el~~~~a~~kkeae~~~~EL~~m~~~kdEkE~~i~~LqsE~e~lk~Q~ 639 (810)
+..++..+.++...|++-+.+...|...+.+|+.+.++...+|.+++.--..-...+..|..++..++...
T Consensus 283 l~s~~~ELe~ak~~L~~~k~E~~~L~~~vesL~~ELe~~K~el~~lke~e~~a~~~v~~L~~eL~~~r~eL 353 (522)
T PF05701_consen 283 LASAKKELEEAKKELEKAKEEASSLRASVESLRSELEKEKEELERLKEREKEASSEVSSLEAELNKTRSEL 353 (522)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHhhHHHHHHHHHHHH
Confidence 33344445555566666666666666666666666666666666666644444555555555555444443
No 38
>PF12128 DUF3584: Protein of unknown function (DUF3584); InterPro: IPR021979 This family consist of uncharacterised bacterial proteins.
Probab=97.23 E-value=1.1 Score=56.01 Aligned_cols=426 Identities=18% Similarity=0.262 Sum_probs=196.4
Q ss_pred chHHHHHHHHHHHHhhhhh---hHHHHHHHHHHHH----HHhhhhhhHHHHHHhhHHhhhHHHHHHHHhhhhhhhhHHHH
Q 003570 110 GSVEKLKNEIAVMMRQVEL---SELELLSLRKQVA----KESKRAQDQTRQIISLSSERDALTIECEQLRKQNSIDIAEI 182 (810)
Q Consensus 110 ~~iEkLKsE~~~l~Rq~e~---selELQtLRKQi~----KESKRgqdLsrEv~~lk~ERD~Lk~EcEqLksqk~~~ea~~ 182 (810)
..+++++.++..|...-.- ...+|..|+-.+. ....+...+..++..+..++..+...+.+++..-.......
T Consensus 239 ~~~~~~r~~~~~l~~~~~~l~~~~~~L~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~e~~~~~~~~~~~~ 318 (1201)
T PF12128_consen 239 QGFEKVRPEFDKLQQQYRQLQALEQQLCHLHAELNADEQQLEQEQPELKEELNELNEELEKLEDEIKELRDELNKELSAL 318 (1201)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3788999998888766443 3444554444443 33444555666666666666666666666655111111111
Q ss_pred hh---------------hhhhhh-hhHHHHHHHHHHhhhhhhcchhhhhhhhhhhhhhHHHHHHHHHHHHHHHHhhhhhh
Q 003570 183 ER---------------RLQSEE-HLKFLQEEIREELNYEKEVSAHLRLQLEKTQDSNAELILAVKDLNEMLEQKNMEIS 246 (810)
Q Consensus 183 ~~---------------~lq~e~-D~~~llEElr~EL~yEKelNaNL~LQLqKTQESNsELilAVqDLeeMLEqKn~EIs 246 (810)
.. +..++. |. +++...++=+ ..++-+++..+..=.-|..+++|++.........+.
T Consensus 319 ~~~l~~~~~~L~~i~~~~~~ye~~~i----~~~~~~~~~l----~~~~~~~~~l~~~~~~Lt~~~~di~~ky~~~~~~l~ 390 (1201)
T PF12128_consen 319 NADLARIKSELDEIEQQKKDYEDADI----EQLIARVDQL----PEWRNELENLQEQLDLLTSKHQDIESKYNKLKQKLE 390 (1201)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHCCH----HHHHHHHHhh----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 11 111111 21 1111111111 123333344444444556666666666666555544
Q ss_pred hhhhhhhhhhhhhhhHHHHHHHHhhccC-chhhHHHHHHHHHhhhHHHHhhhhHHHHHHHHHHHHHHHHHHHhhhhhhhh
Q 003570 247 SLSSKLEESKLVREDQLALEALAKERNK-DKEVDMLKQKIRDQGDEIQFFKKHAEDLEIYIKQLTEDCQVLEQENQCLTS 325 (810)
Q Consensus 247 ~ls~~~~e~~~~~edq~ale~Lvke~~~-~~E~~~LkqKI~DL~~Eie~ykkerEeLe~~ieQL~~D~E~LkqEN~~ls~ 325 (810)
.-........+.. -...-+..++.... ......+........ ....+.+..+..++......|+..-....+
T Consensus 391 ~~~~~~~~~~~~~-~~~~~e~~~~~~~~~~~~~~~l~~~~~~~~------~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~ 463 (1201)
T PF12128_consen 391 EAFNRQQERLQAQ-QDEIREEKAERREQIEEEYQALEQELRQQS------QEQLEELQEQREQLKSELAELKQQLKNPQY 463 (1201)
T ss_pred HHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH------HHHHHHHHHHHHHHHHHHHHHHHHHhCcCC
Confidence 3211111100000 00000001110000 111122222221110 122334444444444444445444444444
Q ss_pred HHHHHHHHhhhhhhhhhhhHhhHHHHHHHHHHHHHHHHHHhHHHhHhhHhHHHHHHHHHHHHHHHHH---HH--------
Q 003570 326 KLEKIQQQESMKSRECIESLATIKELESQSERLEDKIKQQSEEYSESLISINELECQVKELKRELDK---QA-------- 394 (810)
Q Consensus 326 kLEq~q~Qeql~~~EcS~~~~~i~eLe~qve~LE~eLk~q~~efSesL~tI~eLE~qv~sLeeEl~~---Qa-------- 394 (810)
+-+..+.... .=..+.............+..+..++......|-.....+..+..++..+...+.. +.
T Consensus 464 ~~e~~~~~~~-~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~l~~~~~~~~~~~~~~~~l~~~L~p~~gSL~ 542 (1201)
T PF12128_consen 464 TEEEKEQLEQ-ADKRLEQAQEQQNQAQQAVEELQAEEQELRKERDQAEEELRQARRELEELRAQIAELQRQLDPQKGSLL 542 (1201)
T ss_pred CHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCCCCCcHH
Confidence 4444333221 11444445555555556666666666555555555555555544444444332221 11
Q ss_pred -----------------------------------------HHHHhhHHHHHh-----hhHHHHHHHHHHHHHHHHHhhh
Q 003570 395 -----------------------------------------QEFEDDIDAVTH-----AKTEQEQRAIRAEEELRKTRWK 428 (810)
Q Consensus 395 -----------------------------------------q~fe~Dldam~~-----~k~EQEqRAi~AEeaLrKtR~~ 428 (810)
=|..-||++|.. ...+.++++-.++.+|....
T Consensus 543 ~fL~~~~p~We~tIGKVid~eLL~r~dL~P~l~~~~~~dslyGl~LdL~~I~~pd~~~~ee~L~~~l~~~~~~l~~~~-- 620 (1201)
T PF12128_consen 543 EFLRKNKPGWEQTIGKVIDEELLYRTDLEPQLVEDSGSDSLYGLSLDLSAIDVPDYAASEEELRERLEQAEDQLQSAE-- 620 (1201)
T ss_pred HHHHhCCCcHHHHhHhhCCHHHhcCCCCCCeecCCCcccccceeEeehhhcCCchhhcChHHHHHHHHHHHHHHHHHH--
Confidence 112224555543 23344455545555543332
Q ss_pred hhhhHHHHHHHHHHHHHHhhhhhhhhHHHHHHHHHHHHHHHhhHHHH----HHHHHHhHHHHhhhhhhhhccHHHHhHHH
Q 003570 429 NTVTAERLQDEFRRLSVDMASKFDENEKLAMKAMTEANEQRMQKAHL----EEMLQKANDELSLIKDQNGVKLQELSDQL 504 (810)
Q Consensus 429 na~taErLQeEf~~LS~qmsSt~eeNEklt~kA~~EaseLR~qk~~L----EemLqk~neeL~~i~dq~e~kl~eL~~ql 504 (810)
...+.+++.+.....+ ++........|-++....+.+...+ ...-.++.+.+..-+.+.+.++..+..++
T Consensus 621 --~~~~~~e~~l~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~l 694 (1201)
T PF12128_consen 621 --ERQEELEKQLKQINKK----IEELKREITQAEQELKQAEQDLQRLKNEREQLKQEIEEAKEERKEQIEEQLNELEEEL 694 (1201)
T ss_pred --HHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 1234455554444333 3333333333333333333222222 22223344445555566677788888888
Q ss_pred hhHHHHHHHHHHhhhhchhhhh-HHhhhHHHHHHhHHHHHHHHHHHHHHHHHhhhh
Q 003570 505 EQKDKQIQKMYLELDHSSSQLI-DEHKSEAQKHEALSTEIHMLRTEIEKLRKEQYN 559 (810)
Q Consensus 505 d~k~k~ie~m~~Ele~kS~qle-~~kk~~ee~~~a~s~EI~~Lk~eie~L~~e~~~ 559 (810)
..-.++++++..++...-.++. ..+.+-.++.+++...|..++.+|...+.+...
T Consensus 695 ~~~~~e~~~~~~~~~~~~~e~~~e~~~~~~~~~~~~d~~i~~i~~~i~~~~~~~~~ 750 (1201)
T PF12128_consen 695 KQLKQELEELLEELKEQLKELRNELKAQWQELEAELDEQIEQIKQEIAAAKQEAKE 750 (1201)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 8888888888888876666665 444566677777777777777777766655444
No 39
>PF12128 DUF3584: Protein of unknown function (DUF3584); InterPro: IPR021979 This family consist of uncharacterised bacterial proteins.
Probab=97.23 E-value=1.1 Score=55.94 Aligned_cols=19 Identities=16% Similarity=0.347 Sum_probs=11.5
Q ss_pred CcchHHHHHHHHHHHHhhh
Q 003570 108 SDGSVEKLKNEIAVMMRQV 126 (810)
Q Consensus 108 sd~~iEkLKsE~~~l~Rq~ 126 (810)
....+..+++++..+..+.
T Consensus 318 ~~~~l~~~~~~L~~i~~~~ 336 (1201)
T PF12128_consen 318 LNADLARIKSELDEIEQQK 336 (1201)
T ss_pred HHHHHHHHHHHHHHHHHHH
Confidence 3456677776666665544
No 40
>PHA02562 46 endonuclease subunit; Provisional
Probab=97.18 E-value=0.017 Score=64.12 Aligned_cols=101 Identities=13% Similarity=0.201 Sum_probs=64.1
Q ss_pred cccchhhHHHhhhhhhhhhHHHHHHHHHHHHHHHHH--HHHh-hhccCchhHHHHhhHHHHHHHHHHHHHHHHhhhh---
Q 003570 574 VSTGETDMLIQKWNRERDDLEKKFASAKQEAAKAHE--ELIS-MRSLKGENEMLIGNLQAEVENLKVQQNKLQNSLI--- 647 (810)
Q Consensus 574 ~s~~e~~~~lq~~~~er~el~~~~a~~kkeae~~~~--EL~~-m~~~kdEkE~~i~~LqsE~e~lk~Q~~~LK~sL~--- 647 (810)
..+...+..|..-...+..+...++.+.+....+.. .... -+.+.+. +..+..|...+..|..++..+...+.
T Consensus 248 ~~i~~~~~~L~~l~~~~~~~~~~l~~~~~~~~~~~~~~~Cp~C~~~~~~~-~~~~~~l~d~i~~l~~~l~~l~~~i~~~~ 326 (562)
T PHA02562 248 MDIEDPSAALNKLNTAAAKIKSKIEQFQKVIKMYEKGGVCPTCTQQISEG-PDRITKIKDKLKELQHSLEKLDTAIDELE 326 (562)
T ss_pred cccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCCCCCCcCCCc-HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344555566677777777777777777776655531 1111 2335555 88888898999999999988888887
Q ss_pred HHHHHhhHHHHHHHHHHHHHHhhHHHHH
Q 003570 648 EEKLEKDNLAKQVFQLKDELQKKKEEIN 675 (810)
Q Consensus 648 ~ee~EKe~l~kQv~qLk~eL~KKe~~~~ 675 (810)
....+...+...+..++..+....+.+.
T Consensus 327 ~~~~~~~~~~~~i~el~~~i~~~~~~i~ 354 (562)
T PHA02562 327 EIMDEFNEQSKKLLELKNKISTNKQSLI 354 (562)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3344444555555555555555555544
No 41
>KOG0612 consensus Rho-associated, coiled-coil containing protein kinase [Signal transduction mechanisms]
Probab=97.01 E-value=1.8 Score=54.39 Aligned_cols=72 Identities=22% Similarity=0.249 Sum_probs=44.5
Q ss_pred HHHHHHHHHHHHHHHhhHHHHHHHHHHhHHHHhhhhhhhhc---cHHHH---hHHHhhHHHHHHHHHHhhhhchhhhh
Q 003570 455 EKLAMKAMTEANEQRMQKAHLEEMLQKANDELSLIKDQNGV---KLQEL---SDQLEQKDKQIQKMYLELDHSSSQLI 526 (810)
Q Consensus 455 Eklt~kA~~EaseLR~qk~~LEemLqk~neeL~~i~dq~e~---kl~eL---~~qld~k~k~ie~m~~Ele~kS~qle 526 (810)
|.....+...+++=|.-...++..+.+..+++..++..|.. +++.| ..++.....-++.|+...-+++.-+.
T Consensus 699 e~~~~e~~~~lseek~ar~k~e~~~~~i~~e~e~L~~d~~~~~~~~~~l~r~~~~~~~~vl~Lq~~LEqe~~~r~~~~ 776 (1317)
T KOG0612|consen 699 EAQMKEIESKLSEEKSAREKAENLLLEIEAELEYLSNDYKQSQEKLNELRRSKDQLITEVLKLQSMLEQEISKRLSLQ 776 (1317)
T ss_pred HHHHHHHHHHhcccccHHHHHHHHHHHHHHHHHHHhhhhhhhccchhhhhhhHHHHHHHHHHHHHHHHHHHHHhhhhH
Confidence 45555556666666777778888888888888888877764 22333 33444455566666655444444443
No 42
>KOG0995 consensus Centromere-associated protein HEC1 [Cell cycle control, cell division, chromosome partitioning]
Probab=96.80 E-value=1.7 Score=51.00 Aligned_cols=149 Identities=19% Similarity=0.335 Sum_probs=102.1
Q ss_pred HHHHHHHhhhHHHHhhhhHHHHHHHHHHHHHHH---HHHHhhhhhhhhHHHHHHHHhhhhhhhhhhhHhhHHHHHHHHHH
Q 003570 281 LKQKIRDQGDEIQFFKKHAEDLEIYIKQLTEDC---QVLEQENQCLTSKLEKIQQQESMKSRECIESLATIKELESQSER 357 (810)
Q Consensus 281 LkqKI~DL~~Eie~ykkerEeLe~~ieQL~~D~---E~LkqEN~~ls~kLEq~q~Qeql~~~EcS~~~~~i~eLe~qve~ 357 (810)
|++-...++.+|+.+++...+|..+|.....+- +.|+..-- .+|. ----+.+.+.+++++-+.
T Consensus 226 l~~~~~~i~~~ie~l~~~n~~l~e~i~e~ek~~~~~eslre~~~---------~L~~-----D~nK~~~y~~~~~~k~~~ 291 (581)
T KOG0995|consen 226 LEKYFTSIANEIEDLKKTNRELEEMINEREKDPGKEESLREKKA---------RLQD-----DVNKFQAYVSQMKSKKQH 291 (581)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCcchHHHHHHHHH---------HHHh-----HHHHHHHHHHHHHhhhHH
Confidence 444444457799999999999999998554431 22222111 1222 122245778888999999
Q ss_pred HHHHHHHHhHHHhHhhHhHHHHHHHHHHHHHHHHHHHHHH-HhhHHHHHhhhHHHHHHHHH---HHHHHHHHhhhhhhhH
Q 003570 358 LEDKIKQQSEEYSESLISINELECQVKELKRELDKQAQEF-EDDIDAVTHAKTEQEQRAIR---AEEELRKTRWKNTVTA 433 (810)
Q Consensus 358 LE~eLk~q~~efSesL~tI~eLE~qv~sLeeEl~~Qaq~f-e~Dldam~~~k~EQEqRAi~---AEeaLrKtR~~na~ta 433 (810)
.+++|.....+.-.-=-.|..|..++.+|+..++.| +| -+|+.-|-+++.+-.+-... +-+.|.+-=|+--..+
T Consensus 292 ~~~~l~~l~~Eie~kEeE~e~lq~~~d~Lk~~Ie~Q--~iS~~dve~mn~Er~~l~r~l~~i~~~~d~l~k~vw~~~l~~ 369 (581)
T KOG0995|consen 292 MEKKLEMLKSEIEEKEEEIEKLQKENDELKKQIELQ--GISGEDVERMNLERNKLKRELNKIQSELDRLSKEVWELKLEI 369 (581)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc--CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHH
Confidence 999999998888777778888999999999999998 55 47899999888887775444 3456666666666655
Q ss_pred HHHHHHHHHHHH
Q 003570 434 ERLQDEFRRLSV 445 (810)
Q Consensus 434 ErLQeEf~~LS~ 445 (810)
++.=+++..+-.
T Consensus 370 ~~~f~~le~~~~ 381 (581)
T KOG0995|consen 370 EDFFKELEKKFI 381 (581)
T ss_pred HHHHHHHHHHHH
Confidence 555444444333
No 43
>KOG0964 consensus Structural maintenance of chromosome protein 3 (sister chromatid cohesion complex Cohesin, subunit SMC3) [Cell cycle control, cell division, chromosome partitioning]
Probab=96.80 E-value=1.8 Score=53.45 Aligned_cols=286 Identities=21% Similarity=0.295 Sum_probs=156.1
Q ss_pred HHHHHHHHHHHHHHHHHhhHHHHHh-hhHHHHHHHHHHHHHHHHHhhhhhhhHHHHHHHHHHHHHHhhhhhhhhHHHHH-
Q 003570 382 QVKELKRELDKQAQEFEDDIDAVTH-AKTEQEQRAIRAEEELRKTRWKNTVTAERLQDEFRRLSVDMASKFDENEKLAM- 459 (810)
Q Consensus 382 qv~sLeeEl~~Qaq~fe~Dldam~~-~k~EQEqRAi~AEeaLrKtR~~na~taErLQeEf~~LS~qmsSt~eeNEklt~- 459 (810)
+|..|.+.++...+.++.+...+.. .+.+-++|+ |--|. |.-+..-.-.++.+|....++..++++.+.-
T Consensus 188 kI~ell~yieerLreLEeEKeeL~~Yqkldk~rr~------lEYti--YdrEl~E~~~~l~~le~~r~~~~e~s~~~~~~ 259 (1200)
T KOG0964|consen 188 KINELLKYIEERLRELEEEKEELEKYQKLDKERRS------LEYTI--YDRELNEINGELERLEEDRSSAPEESEQYIDA 259 (1200)
T ss_pred HHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHhHhh------hhhhh--hhhHHHHHHHHHHHHHHHHhccchhhhhHHHH
Confidence 4455555556666666666555533 223333333 22222 2223344456778888888888888887653
Q ss_pred --HHHHHHHHHHhhHHHHHHHHHHhHHHHhhhhhhh----------hccHHHHhHHHhh-------HHHHHHHHHHhhhh
Q 003570 460 --KAMTEANEQRMQKAHLEEMLQKANDELSLIKDQN----------GVKLQELSDQLEQ-------KDKQIQKMYLELDH 520 (810)
Q Consensus 460 --kA~~EaseLR~qk~~LEemLqk~neeL~~i~dq~----------e~kl~eL~~qld~-------k~k~ie~m~~Ele~ 520 (810)
++..+...+-.+.+.||..|...+++...++.++ ++++.+|+.+|-. .-...+..--++.+
T Consensus 260 ~~~~~d~~~~~~~~i~ele~~l~~l~~ekeq~~a~~t~~~k~kt~lel~~kdlq~~i~~n~q~r~~~l~~l~~~~~ki~e 339 (1200)
T KOG0964|consen 260 LDKVEDESEDLKCEIKELENKLTNLREEKEQLKARETKISKKKTKLELKIKDLQDQITGNEQQRNLALHVLQKVKDKIEE 339 (1200)
T ss_pred HHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhHHHHHHhhhhhhhhhhHHHHHHHHHHHHHH
Confidence 4667778888889999999999888888777663 3344444444433 22223333333333
Q ss_pred chhhhhHHhhhHHHHHHhHHHHHHHHHHHHHHHHHhhhh-hhhcccccCC-------CCCCcccchhhHHHhhhhhhhhh
Q 003570 521 SSSQLIDEHKSEAQKHEALSTEIHMLRTEIEKLRKEQYN-LSEHGKRRDD-------NKPKVSTGETDMLIQKWNRERDD 592 (810)
Q Consensus 521 kS~qle~~kk~~ee~~~a~s~EI~~Lk~eie~L~~e~~~-l~e~~~~~d~-------e~~k~s~~e~~~~lq~~~~er~e 592 (810)
+-++| ..-.-...++..+=.+++..|..|...... |-+|.-...+ .=++..+....-.++..+..++-
T Consensus 340 ~~~EL----~~I~Pky~~l~~ee~~~~~rl~~l~~~~~~l~~Kqgr~sqFssk~eRDkwir~ei~~l~~~i~~~ke~e~~ 415 (1200)
T KOG0964|consen 340 KKDEL----SKIEPKYNSLVDEEKRLKKRLAKLEQKQRDLLAKQGRYSQFSSKEERDKWIRSEIEKLKRGINDTKEQENI 415 (1200)
T ss_pred HHHHH----HHhhhHHHHHHhHHHHHHHHHHHHHHHHHHHHHhhccccccCcHHHHHHHHHHHHHHHHHHHhhhhhHHHH
Confidence 33333 223345677778888888888888876655 3333311111 01122233334444555555555
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhhccCchhHHHHhhHHHHHHHHHHHHHHHHhhhhHHHHHhhHHHHHHHHHHHHHHhhHH
Q 003570 593 LEKKFASAKQEAAKAHEELISMRSLKGENEMLIGNLQAEVENLKVQQNKLQNSLIEEKLEKDNLAKQVFQLKDELQKKKE 672 (810)
Q Consensus 593 l~~~~a~~kkeae~~~~EL~~m~~~kdEkE~~i~~LqsE~e~lk~Q~~~LK~sL~~ee~EKe~l~kQv~qLk~eL~KKe~ 672 (810)
|.+.++.+..+-+.-++++..+-..=+|-...+..+-++.-.++..++++..-=-.-=-|--+|+.-+..++.+|.+.+.
T Consensus 416 lq~e~~~~e~~l~~~~e~i~~l~~si~e~~~r~~~~~~~~~~~k~~~del~~~Rk~lWREE~~l~~~i~~~~~dl~~~~~ 495 (1200)
T KOG0964|consen 416 LQKEIEDLESELKEKLEEIKELESSINETKGRMEEFDAENTELKRELDELQDKRKELWREEKKLRSLIANLEEDLSRAEK 495 (1200)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 55555555555555555555544444444444444444444444444443211111111223566667777777777777
Q ss_pred HHHhhhh
Q 003570 673 EINRTGK 679 (810)
Q Consensus 673 ~~~~~ek 679 (810)
.+..+..
T Consensus 496 ~L~~~~~ 502 (1200)
T KOG0964|consen 496 NLRATMN 502 (1200)
T ss_pred HHHHhcc
Confidence 7666554
No 44
>PHA02562 46 endonuclease subunit; Provisional
Probab=96.80 E-value=0.27 Score=54.86 Aligned_cols=62 Identities=18% Similarity=0.187 Sum_probs=41.4
Q ss_pred HhhHHHHHHHHHHHHHHHHhhhhHHHHHhhHHHHHHHHHHHHHHhhHHHHHhhhhcccccCC
Q 003570 625 IGNLQAEVENLKVQQNKLQNSLIEEKLEKDNLAKQVFQLKDELQKKKEEINRTGKGLKKYGG 686 (810)
Q Consensus 625 i~~LqsE~e~lk~Q~~~LK~sL~~ee~EKe~l~kQv~qLk~eL~KKe~~~~~~ekklk~s~g 686 (810)
+..++..+..++......+..+..-..+...++..|..|.......++++..++.++.+-+.
T Consensus 332 ~~~~~~~i~el~~~i~~~~~~i~~~~~~~~~l~~ei~~l~~~~~~~~~~l~~l~~~l~~~~~ 393 (562)
T PHA02562 332 FNEQSKKLLELKNKISTNKQSLITLVDKAKKVKAAIEELQAEFVDNAEELAKLQDELDKIVK 393 (562)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhchHHHHHHHHHHHHHHHH
Confidence 45556666666666677777776666666777777777777766666667666666655544
No 45
>PF15070 GOLGA2L5: Putative golgin subfamily A member 2-like protein 5
Probab=96.77 E-value=1.8 Score=51.04 Aligned_cols=231 Identities=20% Similarity=0.274 Sum_probs=123.2
Q ss_pred hhhHHHHHHHHHhhhHHHHhhhhHHHHHHHHHHHHHHHHHHHhhhhhhhhHHHHHHHHhhhhhhhhhhhHhhHHHHHHHH
Q 003570 276 KEVDMLKQKIRDQGDEIQFFKKHAEDLEIYIKQLTEDCQVLEQENQCLTSKLEKIQQQESMKSRECIESLATIKELESQS 355 (810)
Q Consensus 276 ~E~~~LkqKI~DL~~Eie~ykkerEeLe~~ieQL~~D~E~LkqEN~~ls~kLEq~q~Qeql~~~EcS~~~~~i~eLe~qv 355 (810)
.+...+++||..+..++...+++++..-.++..|+.....|+. +.+....-..+..+-..-..|...+
T Consensus 22 ~e~a~~qqr~~qmseev~~L~eEk~~~~~~V~eLE~sL~eLk~------------q~~~~~~~~~pa~pse~E~~Lq~E~ 89 (617)
T PF15070_consen 22 EESAQWQQRMQQMSEEVRTLKEEKEHDISRVQELERSLSELKN------------QMAEPPPPEPPAGPSEVEQQLQAEA 89 (617)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH------------hhcccCCccccccchHHHHHHHHHH
Confidence 3556788888888888888888888888888888877655543 1111000011111111111222222
Q ss_pred HHHHHHHHHHhHHHhHhhHhHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHhhhHHHHHHHHHHHHHHHHHhhhhhhhHHH
Q 003570 356 ERLEDKIKQQSEEYSESLISINELECQVKELKRELDKQAQEFEDDIDAVTHAKTEQEQRAIRAEEELRKTRWKNTVTAER 435 (810)
Q Consensus 356 e~LE~eLk~q~~efSesL~tI~eLE~qv~sLeeEl~~Qaq~fe~Dldam~~~k~EQEqRAi~AEeaLrKtR~~na~taEr 435 (810)
++|-. .+..|...+ +.-..|-..+...+.++++|....|..|+...-
T Consensus 90 ~~L~k---------------------ElE~L~~ql----qaqv~~ne~Ls~L~~EqEerL~ELE~~le~~~e-------- 136 (617)
T PF15070_consen 90 EHLRK---------------------ELESLEEQL----QAQVENNEQLSRLNQEQEERLAELEEELERLQE-------- 136 (617)
T ss_pred HHHHH---------------------HHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--------
Confidence 22222 222333222 233345566777888999999888888876332
Q ss_pred HHHHHHHHHHHhhhhhhhhHHHHHHHHHHHHHHHhhHHHHHHH---HHHhHHHHhhhhhhhhccHH-HHhHHHhhHHHHH
Q 003570 436 LQDEFRRLSVDMASKFDENEKLAMKAMTEANEQRMQKAHLEEM---LQKANDELSLIKDQNGVKLQ-ELSDQLEQKDKQI 511 (810)
Q Consensus 436 LQeEf~~LS~qmsSt~eeNEklt~kA~~EaseLR~qk~~LEem---Lqk~neeL~~i~dq~e~kl~-eL~~qld~k~k~i 511 (810)
-..+..+|..+|.|-.. .+..|++---+|..|..-|+.- |.+-|-+|.+ .-|.+-.+. +|..++.-....+
T Consensus 137 ~~~D~~kLLe~lqsdk~----t~SRAlsQN~eLK~QL~Elq~~Fv~ltne~~elt~-~lq~Eq~~~keL~~kl~~l~~~l 211 (617)
T PF15070_consen 137 QQEDRQKLLEQLQSDKA----TASRALSQNRELKEQLAELQDAFVKLTNENMELTS-ALQSEQHVKKELQKKLGELQEKL 211 (617)
T ss_pred HHHHHHHHHhhhcccch----HHHHHHHhHHHHHHHHHHHHHHHHHHHHhhhHhhH-HHHHHHHHHHHHHHHHHHHHHHH
Confidence 22456777777755443 3455666666666666666663 3333323322 122333333 4555555445555
Q ss_pred HHHHHhhhhchhhhhHHhhhHHHHHHhHHHHHHHHHHHHHHHHHhhhhh
Q 003570 512 QKMYLELDHSSSQLIDEHKSEAQKHEALSTEIHMLRTEIEKLRKEQYNL 560 (810)
Q Consensus 512 e~m~~Ele~kS~qle~~kk~~ee~~~a~s~EI~~Lk~eie~L~~e~~~l 560 (810)
..|..-++.|+..+..++...++..+ .++...+....|..+...|
T Consensus 212 ~~~~e~le~K~qE~~~Lq~q~dq~~~----~Lqqy~a~~q~l~~e~e~L 256 (617)
T PF15070_consen 212 HNLKEKLELKSQEAQSLQEQRDQYLG----HLQQYVAAYQQLASEKEEL 256 (617)
T ss_pred HHHHHHHHhhhHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHH
Confidence 55666666676677666666655333 3333334444444444444
No 46
>PF05622 HOOK: HOOK protein; InterPro: IPR008636 This family consists of several HOOK1, 2 and 3 proteins from different eukaryotic organisms. The different members of the Homo sapiens gene family are HOOK1, HOOK2 and HOOK3. Different domains have been identified in the three Homo sapiens HOOK proteins, and it was demonstrated that the highly conserved NH2-domain mediates attachment to microtubules, whereas the central coiled-coil motif mediates homodimerisation and the more divergent C-terminal domains are involved in binding to specific organelles (organelle-binding domains). It has been demonstrated that endogenous HOOK3 binds to Golgi membranes [], whereas both HOOK1 and HOOK2 are localised to discrete but unidentified cellular structures. In mice the Hook1 gene is predominantly expressed in the testis. Hook1 function is necessary for the correct positioning of microtubular structures within the haploid germ cell. Disruption of Hook1 function in mice causes abnormal sperm head shape and fragile attachment of the flagellum to the sperm head [].; GO: 0008017 microtubule binding, 0000226 microtubule cytoskeleton organization, 0005737 cytoplasm; PDB: 1WIX_A.
Probab=96.73 E-value=0.00037 Score=80.87 Aligned_cols=206 Identities=26% Similarity=0.366 Sum_probs=0.0
Q ss_pred HHHhhhHHHHhhhhHHHHHHHHHHHHHHHHHHHhhhhhhhhHHHHHHHHhhhhh-hhhhhhHhhHHHHHHHHHHHHHHHH
Q 003570 285 IRDQGDEIQFFKKHAEDLEIYIKQLTEDCQVLEQENQCLTSKLEKIQQQESMKS-RECIESLATIKELESQSERLEDKIK 363 (810)
Q Consensus 285 I~DL~~Eie~ykkerEeLe~~ieQL~~D~E~LkqEN~~ls~kLEq~q~Qeql~~-~EcS~~~~~i~eLe~qve~LE~eLk 363 (810)
+..+..+.+.|...+.+|..+|..|..+.+.|..+|..+..++.+.. . .. ...+..-....+|.+++.+|..++.
T Consensus 181 l~~~~~e~d~l~q~~~el~~~i~~L~~e~~~L~~e~~~l~~~~~~~~--~--~~~~~~~~~~~~~~~l~~ql~~L~~el~ 256 (713)
T PF05622_consen 181 LSRLVAERDELAQRCHELEKQISDLQEEKESLQSENEELQERLSQLE--G--SSEEPSQHLSVELADLRAQLRRLREELE 256 (713)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHhhhhhhhhhcccCCCC--C--CCCCcchHHHHHHHHHHHHHHHHHHHHH
Confidence 34444555566666778888888888888888888888887776633 0 11 1222222446778888888888887
Q ss_pred HHhHHHhHhhHhHHHHHHHHHHHHHHH------HHHHHHHHhhHHHHHhhhHHHHHHHHHHHHHHHHHhhhhhhhHHHHH
Q 003570 364 QQSEEYSESLISINELECQVKELKREL------DKQAQEFEDDIDAVTHAKTEQEQRAIRAEEELRKTRWKNTVTAERLQ 437 (810)
Q Consensus 364 ~q~~efSesL~tI~eLE~qv~sLeeEl------~~Qaq~fe~Dldam~~~k~EQEqRAi~AEeaLrKtR~~na~taErLQ 437 (810)
....-.-++=..+..++..|..|.++. +..++.+-+++|++-+.-. |+.+.|.++-+-| ++--.++-|.
T Consensus 257 ~~e~~~~d~~~~~e~le~ei~~L~q~~~eL~~~A~~a~~LrDElD~lR~~a~----r~~klE~~ve~YK-kKLed~~~lk 331 (713)
T PF05622_consen 257 RLEEQRDDLKIELEELEKEIDELRQENEELQAEAREARALRDELDELREKAD----RADKLENEVEKYK-KKLEDLEDLK 331 (713)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHH----HHHHHHHHHHHHH-HHHHHHHHHH
Confidence 655545555556666666666666553 2456677777777654322 2333344443333 2332333333
Q ss_pred HHHHHHHHHhhhhhhhhHHHHHHHHHHHHHHHhhHHHHHHHHHHhHHHHhhhhhhhhccHHHHhHHHhhHHHHHHHHHHh
Q 003570 438 DEFRRLSVDMASKFDENEKLAMKAMTEANEQRMQKAHLEEMLQKANDELSLIKDQNGVKLQELSDQLEQKDKQIQKMYLE 517 (810)
Q Consensus 438 eEf~~LS~qmsSt~eeNEklt~kA~~EaseLR~qk~~LEemLqk~neeL~~i~dq~e~kl~eL~~qld~k~k~ie~m~~E 517 (810)
..++.|=.+-. .|..++..||+-|.+++. ++.-=+.|+.++.+|...++.....++++..+
T Consensus 332 ~qvk~Lee~N~------------------~l~e~~~~LEeel~~~~~-~~~qle~~k~qi~eLe~~l~~~~~~~~~l~~e 392 (713)
T PF05622_consen 332 RQVKELEEDNA------------------VLLETKAMLEEELKKARA-LKSQLEEYKKQIQELEQKLSEESRRADKLEFE 392 (713)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred HHHHHHHHHHH------------------HHHHHHHHHHHHHHHhHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33222222111 233344556666666543 22222335555555555555554444444333
Q ss_pred h
Q 003570 518 L 518 (810)
Q Consensus 518 l 518 (810)
+
T Consensus 393 ~ 393 (713)
T PF05622_consen 393 N 393 (713)
T ss_dssp -
T ss_pred H
Confidence 3
No 47
>COG0419 SbcC ATPase involved in DNA repair [DNA replication, recombination, and repair]
Probab=96.50 E-value=3.2 Score=50.32 Aligned_cols=55 Identities=25% Similarity=0.354 Sum_probs=27.1
Q ss_pred hhhhHhhHHHHHHHHHHHHHHHHHHhHHHhHhhHhHHHHHHHHHHHHHHHHHHHH
Q 003570 341 CIESLATIKELESQSERLEDKIKQQSEEYSESLISINELECQVKELKRELDKQAQ 395 (810)
Q Consensus 341 cS~~~~~i~eLe~qve~LE~eLk~q~~efSesL~tI~eLE~qv~sLeeEl~~Qaq 395 (810)
|......+..|+..+......+.+....+.........+...+..+...+.....
T Consensus 363 ~~~l~~~~~~l~~~~~~~le~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~ 417 (908)
T COG0419 363 LKELEERLEELEKELEKALERLKQLEEAIQELKEELAELSAALEEIQEELEELEK 417 (908)
T ss_pred HHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444444666776666533344444444444444455555544444444444433
No 48
>PF00261 Tropomyosin: Tropomyosin; InterPro: IPR000533 Tropomyosins [], are a family of closely related proteins present in muscle and non-muscle cells. In striated muscle, tropomyosin mediate the interactions between the troponin complex and actin so as to regulate muscle contraction []. The role of tropomyosin in smooth muscle and non-muscle tissues is not clear. Tropomyosin is an alpha-helical protein that forms a coiled-coil structure of 2 parallel helices containing 2 sets of 7 alternating actin binding sites []. There are multiple cell-specific isoforms, created by differential splicing of the messenger RNA from one gene, but the proportions of the isoforms vary between different cell types. Muscle isoforms of tropomyosin are characterised by having 284 amino acid residues and a highly conserved N-terminal region, whereas non-muscle forms are generally smaller and are heterogeneous in their N-terminal region. This entry represents tropomyosin (Tmp) 1, 2 and 3. Within the yeast Tmp1 and Tmp2, biochemical and sequence analyses indicate that Tpm2 spans four actin monomers along a filament, whereas Tpm1 spans five. Despite its shorter length, Tpm2 can compete with Tpm1 for binding to F-actin. Over-expression of Tpm2 in vivo alters the axial budding of haploids to a bipolar pattern, and this can be partially suppressed by co-over-expression of Tpm1. This suggests distinct functions for the two tropomyosins, and indicates that the ratio between them is important for correct morphogenesis [].; PDB: 2EFR_A 2Z5H_C 2Z5I_D 2D3E_B 2EFS_D 3U59_B 1C1G_C 1IHQ_A 3AZD_B 1MV4_B ....
Probab=96.38 E-value=1.5 Score=45.26 Aligned_cols=87 Identities=22% Similarity=0.341 Sum_probs=48.1
Q ss_pred hhHHHHHHHHHHHHHHHHHHhHHHhHhhHhHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHhhhHHHHHHHHHHHHHHHHH
Q 003570 346 ATIKELESQSERLEDKIKQQSEEYSESLISINELECQVKELKRELDKQAQEFEDDIDAVTHAKTEQEQRAIRAEEELRKT 425 (810)
Q Consensus 346 ~~i~eLe~qve~LE~eLk~q~~efSesL~tI~eLE~qv~sLeeEl~~Qaq~fe~Dldam~~~k~EQEqRAi~AEeaLrKt 425 (810)
.-|.+.+..+..++.+|+.....+...-..|..|...|..|+.+|..-..+|. ..+.-=.+-++++-.++.+++..
T Consensus 8 ~eld~~~~~~~~~~~~l~~~~~~~~~aE~e~~~l~rri~~lE~~le~~eerL~----~~~~kL~~~e~~~de~er~~k~l 83 (237)
T PF00261_consen 8 DELDEAEERLEEAEEKLKEAEKRAEKAEAEVASLQRRIQLLEEELERAEERLE----EATEKLEEAEKRADESERARKVL 83 (237)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHCCCC----HHHHHHHHHHHHHHHHCHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHH----HHHHHHHHHHHHHHHHHHHHHHH
Confidence 34556666777777777777777777777777777777777766654433332 22222223334444444444444
Q ss_pred hhhhhhhHHHH
Q 003570 426 RWKNTVTAERL 436 (810)
Q Consensus 426 R~~na~taErL 436 (810)
........+++
T Consensus 84 E~r~~~~eeri 94 (237)
T PF00261_consen 84 ENREQSDEERI 94 (237)
T ss_dssp HHHHHHHHHHH
T ss_pred HhHHHHHHHHH
Confidence 44444433333
No 49
>PRK09039 hypothetical protein; Validated
Probab=96.15 E-value=0.48 Score=51.76 Aligned_cols=148 Identities=19% Similarity=0.276 Sum_probs=108.5
Q ss_pred chhhHHHHHHHHHhhhHHHHhhhhHHHHHHHHHHHHHHHHHHHhhhhhhhhHHHHHHHHhhhhhhhhhhhHhhHHHHHHH
Q 003570 275 DKEVDMLKQKIRDQGDEIQFFKKHAEDLEIYIKQLTEDCQVLEQENQCLTSKLEKIQQQESMKSRECIESLATIKELESQ 354 (810)
Q Consensus 275 ~~E~~~LkqKI~DL~~Eie~ykkerEeLe~~ieQL~~D~E~LkqEN~~ls~kLEq~q~Qeql~~~EcS~~~~~i~eLe~q 354 (810)
+.++..|..+|.+|..-+...+.....|...+.+|..+|+.+....-.+..-+. .......+++.+
T Consensus 52 ~~eL~~L~~qIa~L~e~L~le~~~~~~l~~~l~~l~~~l~~a~~~r~~Le~~~~--------------~~~~~~~~~~~~ 117 (343)
T PRK09039 52 DSALDRLNSQIAELADLLSLERQGNQDLQDSVANLRASLSAAEAERSRLQALLA--------------ELAGAGAAAEGR 117 (343)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHh--------------hhhhhcchHHHH
Confidence 468888888898888888888888899999999999999987775543332111 112334678889
Q ss_pred HHHHHHHHHHHhHHHhHhhHhHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHhhhHHHHHHHHHHHHHHHHHhhhhhhhHH
Q 003570 355 SERLEDKIKQQSEEYSESLISINELECQVKELKRELDKQAQEFEDDIDAVTHAKTEQEQRAIRAEEELRKTRWKNTVTAE 434 (810)
Q Consensus 355 ve~LE~eLk~q~~efSesL~tI~eLE~qv~sLeeEl~~Qaq~fe~Dldam~~~k~EQEqRAi~AEeaLrKtR~~na~taE 434 (810)
...|..+|.+.+..+++.--.|.-|..||..|... ...+++.|++......++..+...-...|+.+--...-...
T Consensus 118 ~~~l~~~L~~~k~~~se~~~~V~~L~~qI~aLr~Q----la~le~~L~~ae~~~~~~~~~i~~L~~~L~~a~~~~~~~l~ 193 (343)
T PRK09039 118 AGELAQELDSEKQVSARALAQVELLNQQIAALRRQ----LAALEAALDASEKRDRESQAKIADLGRRLNVALAQRVQELN 193 (343)
T ss_pred HHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999998766 56788888888877777766664443333333222222335
Q ss_pred HHHHHH
Q 003570 435 RLQDEF 440 (810)
Q Consensus 435 rLQeEf 440 (810)
++..+|
T Consensus 194 ~~~~~~ 199 (343)
T PRK09039 194 RYRSEF 199 (343)
T ss_pred HhHHHH
Confidence 555555
No 50
>TIGR03185 DNA_S_dndD DNA sulfur modification protein DndD. This model describes the DndB protein encoded by an operon associated with a sulfur-containing modification to DNA. The operon is sporadically distributed in bacteria, much like some restriction enzyme operons. DndD is described as a putative ATPase. The small number of examples known so far include species from among the Firmicutes, Actinomycetes, Proteobacteria, and Cyanobacteria.
Probab=96.13 E-value=4 Score=47.74 Aligned_cols=82 Identities=15% Similarity=0.259 Sum_probs=51.3
Q ss_pred HhhHHHHHHHHHHHHHHHHHHhHHHhHhhHhHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHhhhHHHHHHHHHHHHHHHH
Q 003570 345 LATIKELESQSERLEDKIKQQSEEYSESLISINELECQVKELKRELDKQAQEFEDDIDAVTHAKTEQEQRAIRAEEELRK 424 (810)
Q Consensus 345 ~~~i~eLe~qve~LE~eLk~q~~efSesL~tI~eLE~qv~sLeeEl~~Qaq~fe~Dldam~~~k~EQEqRAi~AEeaLrK 424 (810)
+..+.+|+..+..+..++.....+...+-..+..++.++..+...+...--.+....+.+.....+.+.+..+++..+++
T Consensus 208 ~~~~~~le~el~~l~~~~e~l~~~i~~l~~ele~a~~~l~~l~~~~~~~GG~~~~~r~~Le~ei~~le~e~~e~~~~l~~ 287 (650)
T TIGR03185 208 LSEIEALEAELKEQSEKYEDLAQEIAHLRNELEEAQRSLESLEKKFRSEGGDLFEEREQLERQLKEIEAARKANRAQLRE 287 (650)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34555666666666666666666666666666666666666666666666666666666666666655555555555554
Q ss_pred Hh
Q 003570 425 TR 426 (810)
Q Consensus 425 tR 426 (810)
.-
T Consensus 288 l~ 289 (650)
T TIGR03185 288 LA 289 (650)
T ss_pred Hh
Confidence 43
No 51
>PF09789 DUF2353: Uncharacterized coiled-coil protein (DUF2353); InterPro: IPR019179 Members of this family have been annotated as being coiled-coil domain-containing protein 149, however they currently have no known function.
Probab=96.12 E-value=0.68 Score=50.82 Aligned_cols=181 Identities=21% Similarity=0.261 Sum_probs=104.2
Q ss_pred HhhhHHHHhhhhHHHHHHHHHHHHHHHHHHHhhhhhhh---------------------hHHHHHHHHhhhhhhhhhhhH
Q 003570 287 DQGDEIQFFKKHAEDLEIYIKQLTEDCQVLEQENQCLT---------------------SKLEKIQQQESMKSRECIESL 345 (810)
Q Consensus 287 DL~~Eie~ykkerEeLe~~ieQL~~D~E~LkqEN~~ls---------------------~kLEq~q~Qeql~~~EcS~~~ 345 (810)
=|+.|++-|+.+|+....-++||...|..|+...-++. .-|.++.-+..-.-.|-..+.
T Consensus 13 IL~~eLe~cq~ErDqyKlMAEqLqer~q~LKkk~~el~~~~~~~~d~~~~~~~~~~~La~lL~~sre~Nk~L~~Ev~~Lr 92 (319)
T PF09789_consen 13 ILSQELEKCQSERDQYKLMAEQLQERYQALKKKYRELIQEAAGFGDPSIPPEKENKNLAQLLSESREQNKKLKEEVEELR 92 (319)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhcccCCccCCcccchhhHHHHHHHHHHHHHHHHHHHHHHH
Confidence 35789999999999999999999999999988443333 333333333311114444444
Q ss_pred hhHHHHHHHHHHHHHHHHHHhHHHhHhhHh--HHHHHHHHHHHHHHHHHHHHHHHhhHHHHHhhhHHHHHHHHHHHHHHH
Q 003570 346 ATIKELESQSERLEDKIKQQSEEYSESLIS--INELECQVKELKRELDKQAQEFEDDIDAVTHAKTEQEQRAIRAEEELR 423 (810)
Q Consensus 346 ~~i~eLe~qve~LE~eLk~q~~efSesL~t--I~eLE~qv~sLeeEl~~Qaq~fe~Dldam~~~k~EQEqRAi~AEeaLr 423 (810)
.-+.|+.+.|.-|=..+..++-.+...-.+ ..+=+.=|..| +.+..|...++-|+.++..++.|-..
T Consensus 93 qkl~E~qGD~KlLR~~la~~r~~~~~~~~~~~~~ere~lV~qL-Ek~~~q~~qLe~d~qs~lDEkeEl~~---------- 161 (319)
T PF09789_consen 93 QKLNEAQGDIKLLREKLARQRVGDEGIGARHFPHEREDLVEQL-EKLREQIEQLERDLQSLLDEKEELVT---------- 161 (319)
T ss_pred HHHHHHhchHHHHHHHHHhhhhhhccccccccchHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHH----------
Confidence 444444444444444444443333221111 12233333334 45667777777777777777655321
Q ss_pred HHhhhhhhhHHHHHHHHHHHHHHhhhhhhhhHHHHHHHHHHHHHHHhhHHHHHHHHHHhHHHHhhhh
Q 003570 424 KTRWKNTVTAERLQDEFRRLSVDMASKFDENEKLAMKAMTEANEQRMQKAHLEEMLQKANDELSLIK 490 (810)
Q Consensus 424 KtR~~na~taErLQeEf~~LS~qmsSt~eeNEklt~kA~~EaseLR~qk~~LEemLqk~neeL~~i~ 490 (810)
-|=-|.--|.||..|+ +-.....++ -|..++.|-+.|+-|=+-|..+.+|..+++
T Consensus 162 -ERD~yk~K~~RLN~EL-------n~~L~g~~~----rivDIDaLi~ENRyL~erl~q~qeE~~l~k 216 (319)
T PF09789_consen 162 -ERDAYKCKAHRLNHEL-------NYILNGDEN----RIVDIDALIMENRYLKERLKQLQEEKELLK 216 (319)
T ss_pred -HHHHHHHHHHHHHHHH-------HHHhCCCCC----CcccHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 1222333455555554 222222222 456788888888888888888888887744
No 52
>PF09726 Macoilin: Transmembrane protein; InterPro: IPR019130 This entry represents the multi-pass transmembrane protein Macoilin, which is highly conserved in eukaryotes. ; GO: 0016021 integral to membrane
Probab=96.07 E-value=4.8 Score=48.30 Aligned_cols=66 Identities=24% Similarity=0.419 Sum_probs=33.9
Q ss_pred HHHHHHHHHHHHHHHHHhHHHhHhhHhHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHhhhHHHHHHHHHH
Q 003570 349 KELESQSERLEDKIKQQSEEYSESLISINELECQVKELKRELDKQAQEFEDDIDAVTHAKTEQEQRAIRA 418 (810)
Q Consensus 349 ~eLe~qve~LE~eLk~q~~efSesL~tI~eLE~qv~sLeeEl~~Qaq~fe~Dldam~~~k~EQEqRAi~A 418 (810)
..|+...+.|+.++.++...--.=..++..||.++. +...+-+.+++-|.+-.+++.+-|..|-+|
T Consensus 463 ~qlr~ene~Lq~Kl~~L~~aRq~DKq~l~~LEkrL~----eE~~~R~~lEkQL~eErk~r~~ee~~aar~ 528 (697)
T PF09726_consen 463 SQLRQENEQLQNKLQNLVQARQQDKQSLQQLEKRLA----EERRQRASLEKQLQEERKARKEEEEKAARA 528 (697)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHhHHHHhhhhc
Confidence 333444444444444444333333445555555533 233455567777777666666666655544
No 53
>KOG4593 consensus Mitotic checkpoint protein MAD1 [Cell cycle control, cell division, chromosome partitioning]
Probab=96.03 E-value=5.1 Score=48.09 Aligned_cols=188 Identities=20% Similarity=0.229 Sum_probs=102.4
Q ss_pred HHHHHHHHHHhHHHh---HhhHhHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHhhhHHH------HHHHHHHHHHHHHHh
Q 003570 356 ERLEDKIKQQSEEYS---ESLISINELECQVKELKRELDKQAQEFEDDIDAVTHAKTEQ------EQRAIRAEEELRKTR 426 (810)
Q Consensus 356 e~LE~eLk~q~~efS---esL~tI~eLE~qv~sLeeEl~~Qaq~fe~Dldam~~~k~EQ------EqRAi~AEeaLrKtR 426 (810)
+.|+..+..+..+-+ +...+|..|...+..|+-.+. ++..+.+++-.+.=.++.. .+||+.. +-..+
T Consensus 254 ~~l~~a~~q~~ee~~~~re~~~tv~~LqeE~e~Lqskl~-~~~~l~~~~~~LELeN~~l~tkL~rwE~~~~~---~~~~~ 329 (716)
T KOG4593|consen 254 EELERALSQLREELATLRENRETVGLLQEELEGLQSKLG-RLEKLQSTLLGLELENEDLLTKLQRWERADQE---MGSLR 329 (716)
T ss_pred HHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHH-HHHHHHHHHhhHHHHHHHHHHHHHHHHHHhhh---hhccC
Confidence 344555666666555 777888888888888876654 2334444444444333322 2333222 11111
Q ss_pred hhhh---------hhHHHHHHHHHHHHHHhh------hhhhhhHHHHHHHHHHHHHHHhhHHHHHHHHHHhHHHHhhhhh
Q 003570 427 WKNT---------VTAERLQDEFRRLSVDMA------SKFDENEKLAMKAMTEANEQRMQKAHLEEMLQKANDELSLIKD 491 (810)
Q Consensus 427 ~~na---------~taErLQeEf~~LS~qms------St~eeNEklt~kA~~EaseLR~qk~~LEemLqk~neeL~~i~d 491 (810)
-.++ ++.-+|-....-++..|. --.-++.+-++.---+++.+|.-+-.|...+|++-=.+..+.|
T Consensus 330 ~~~~~~~~~~~e~s~~~~l~~~~~t~~s~~~~~~r~~q~lke~~k~~~~ite~~tklk~l~etl~~~~~~~~~~~tq~~D 409 (716)
T KOG4593|consen 330 TPEDLMEKLVNEQSRNANLKNKNSTVTSPARGLERARQLLKEELKQVAGITEEETKLKELHETLARRLQKRALLLTQERD 409 (716)
T ss_pred CHHHHHHHHHHHHHHHhhhccccccccCcccchHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 1100 011111111122222222 2234556666666677888999998988888888666655555
Q ss_pred hhh---------ccHHHHhHHHhhHHHHHHHHHHhhhhchhhhhHHhhhHHHHHHhHHHHHHHHHHHHHHHH
Q 003570 492 QNG---------VKLQELSDQLEQKDKQIQKMYLELDHSSSQLIDEHKSEAQKHEALSTEIHMLRTEIEKLR 554 (810)
Q Consensus 492 q~e---------~kl~eL~~qld~k~k~ie~m~~Ele~kS~qle~~kk~~ee~~~a~s~EI~~Lk~eie~L~ 554 (810)
-.+ -.++.-.+++.....+++.|+...+.-+-..++. ..+...+|+..+.+.+++.
T Consensus 410 l~~~~~~~~~~~krl~~~l~~~tk~reqlk~lV~~~~k~~~e~e~s-------~~~~~~~i~~~k~~~e~le 474 (716)
T KOG4593|consen 410 LNRAILGSKDDEKRLAEELPQVTKEREQLKGLVQKVDKHSLEMEAS-------MEELYREITGQKKRLEKLE 474 (716)
T ss_pred HHHHHhhccchHHHHHHHhHHHHHHHHHHHHHHHHHHHhhHhhhhh-------hHHHHHHHHHHHHHHHHHH
Confidence 332 2344445666666677777777777666666554 5555666666665555444
No 54
>KOG0250 consensus DNA repair protein RAD18 (SMC family protein) [Replication, recombination and repair]
Probab=96.03 E-value=6.4 Score=49.20 Aligned_cols=198 Identities=20% Similarity=0.291 Sum_probs=100.2
Q ss_pred hhhHhhHHHHHHHHHHHHHHHHHHhHHHhHhhHhHHHHHHHHHHHH---HHHHHHHHHHHhhHHHHH-------------
Q 003570 342 IESLATIKELESQSERLEDKIKQQSEEYSESLISINELECQVKELK---RELDKQAQEFEDDIDAVT------------- 405 (810)
Q Consensus 342 S~~~~~i~eLe~qve~LE~eLk~q~~efSesL~tI~eLE~qv~sLe---eEl~~Qaq~fe~Dldam~------------- 405 (810)
+..-+-+.+..-|+..++.+++.-.....+|-..|+.....+.++. .+++.|.+.+-...+++-
T Consensus 270 k~~W~~V~~~~~ql~~~~~~i~~~qek~~~l~~ki~~~~~k~~~~r~k~teiea~i~~~~~e~~~~d~Ei~~~r~~~~~~ 349 (1074)
T KOG0250|consen 270 KMAWAWVNEVERQLNNQEEEIKKKQEKVDTLQEKIEEKQGKIEEARQKLTEIEAKIGELKDEVDAQDEEIEEARKDLDDL 349 (1074)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHhhhhhhHHHHHHHHHHHHH
Confidence 3445666777777777777777777777777777777777777777 555555555554444433
Q ss_pred -hhhHHHHHHHHHHHHHHHHHhhhhhh---hHHHHHHHHHHHHHHhhhhhhhhHHHHHHHHHHHHHHHhhHHHHHHHHHH
Q 003570 406 -HAKTEQEQRAIRAEEELRKTRWKNTV---TAERLQDEFRRLSVDMASKFDENEKLAMKAMTEANEQRMQKAHLEEMLQK 481 (810)
Q Consensus 406 -~~k~EQEqRAi~AEeaLrKtR~~na~---taErLQeEf~~LS~qmsSt~eeNEklt~kA~~EaseLR~qk~~LEemLqk 481 (810)
++..+.+.....++-..++.+-.... +++.+++++ ...|.+-.+++|+-...==.|+..++.+...|.+.++.
T Consensus 350 ~re~~~~~~~~~~~~n~i~~~k~~~d~l~k~I~~~~~~~---~~~~~~~~~e~e~k~~~L~~evek~e~~~~~L~~e~~~ 426 (1074)
T KOG0250|consen 350 RREVNDLKEEIREIENSIRKLKKEVDRLEKQIADLEKQT---NNELGSELEERENKLEQLKKEVEKLEEQINSLREELNE 426 (1074)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33333222222222222222211111 112222222 12223334444444444444555555555555555555
Q ss_pred hHHHHhhhhhhhhccHHHHhHHHhhHHHHHHHHHHhhhhchhhhhHHhhhHHHHHHhHHHHHHHHHHHHHHH
Q 003570 482 ANDELSLIKDQNGVKLQELSDQLEQKDKQIQKMYLELDHSSSQLIDEHKSEAQKHEALSTEIHMLRTEIEKL 553 (810)
Q Consensus 482 ~neeL~~i~dq~e~kl~eL~~qld~k~k~ie~m~~Ele~kS~qle~~kk~~ee~~~a~s~EI~~Lk~eie~L 553 (810)
|.+++..... .+....+.+..-.+.|+.+ |.+|.+.+++...+..+|-.-...|-..|+.-
T Consensus 427 ~~~~~~~~~e----e~~~i~~~i~~l~k~i~~~-------~~~l~~lk~~k~dkvs~FG~~m~~lL~~I~r~ 487 (1074)
T KOG0250|consen 427 VKEKAKEEEE----EKEHIEGEILQLRKKIENI-------SEELKDLKKTKTDKVSAFGPNMPQLLRAIERR 487 (1074)
T ss_pred HHHHHHHhHH----HHHHHHHHHHHHHHHHHHH-------HHHHHHHHhcccchhhhcchhhHHHHHHHHHH
Confidence 5555555322 2223334444444555554 44455555666666666655555555555543
No 55
>KOG0250 consensus DNA repair protein RAD18 (SMC family protein) [Replication, recombination and repair]
Probab=95.96 E-value=6.8 Score=48.97 Aligned_cols=136 Identities=24% Similarity=0.417 Sum_probs=73.5
Q ss_pred hhccHHHHhHHHhhHHHHHHHHHHhhhhchhh---hhHHhhhHHHHHHhHHHHHHHHHHHHHHHHHhhhhhhhcccccCC
Q 003570 493 NGVKLQELSDQLEQKDKQIQKMYLELDHSSSQ---LIDEHKSEAQKHEALSTEIHMLRTEIEKLRKEQYNLSEHGKRRDD 569 (810)
Q Consensus 493 ~e~kl~eL~~qld~k~k~ie~m~~Ele~kS~q---le~~kk~~ee~~~a~s~EI~~Lk~eie~L~~e~~~l~e~~~~~d~ 569 (810)
.+.++.++..-.+.+...|+-+..-++++... ++...++-.--+++...+++.++..|..+.++-
T Consensus 321 iea~i~~~~~e~~~~d~Ei~~~r~~~~~~~re~~~~~~~~~~~~n~i~~~k~~~d~l~k~I~~~~~~~------------ 388 (1074)
T KOG0250|consen 321 IEAKIGELKDEVDAQDEEIEEARKDLDDLRREVNDLKEEIREIENSIRKLKKEVDRLEKQIADLEKQT------------ 388 (1074)
T ss_pred HHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH------------
Confidence 34455566666666666666665555555442 222223333333333344444444443333211
Q ss_pred CCCCcccchhhHHHhhhhhhhhhHHHHHHHHHHHHHHHHHHHHhhhccCchhHHHHhhHHHHHHHHHHHHHHHHhhhhHH
Q 003570 570 NKPKVSTGETDMLIQKWNRERDDLEKKFASAKQEAAKAHEELISMRSLKGENEMLIGNLQAEVENLKVQQNKLQNSLIEE 649 (810)
Q Consensus 570 e~~k~s~~e~~~~lq~~~~er~el~~~~a~~kkeae~~~~EL~~m~~~kdEkE~~i~~LqsE~e~lk~Q~~~LK~sL~~e 649 (810)
.+..+.++.+.+.++..|+++++++.. .+..|+..+++++.-+...
T Consensus 389 -------------~~~~~~~~~e~e~k~~~L~~evek~e~---------------------~~~~L~~e~~~~~~~~~~~ 434 (1074)
T KOG0250|consen 389 -------------NNELGSELEERENKLEQLKKEVEKLEE---------------------QINSLREELNEVKEKAKEE 434 (1074)
T ss_pred -------------HhhhhhhHHHHHHHHHHHHHHHHHHHH---------------------HHHHHHHHHHHHHHHHHHh
Confidence 356677788888888888888866544 3344555566666666666
Q ss_pred HHHhhHHHHHHHHHHHHHHhhHHHH
Q 003570 650 KLEKDNLAKQVFQLKDELQKKKEEI 674 (810)
Q Consensus 650 e~EKe~l~kQv~qLk~eL~KKe~~~ 674 (810)
+-|+++.+--+.+|+..+.-.-..+
T Consensus 435 ~ee~~~i~~~i~~l~k~i~~~~~~l 459 (1074)
T KOG0250|consen 435 EEEKEHIEGEILQLRKKIENISEEL 459 (1074)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 6666655555555555444444333
No 56
>PF13851 GAS: Growth-arrest specific micro-tubule binding
Probab=95.75 E-value=2.8 Score=42.90 Aligned_cols=107 Identities=23% Similarity=0.388 Sum_probs=84.5
Q ss_pred HHHHHHHHHHHHHHhhhhhhhhHHHHHHHHhhhhhhhhhhhHhhHHHHHHHHHHHHHHHHHHhHHHhHhhHhHHHHHHHH
Q 003570 304 IYIKQLTEDCQVLEQENQCLTSKLEKIQQQESMKSRECIESLATIKELESQSERLEDKIKQQSEEYSESLISINELECQV 383 (810)
Q Consensus 304 ~~ieQL~~D~E~LkqEN~~ls~kLEq~q~Qeql~~~EcS~~~~~i~eLe~qve~LE~eLk~q~~efSesL~tI~eLE~qv 383 (810)
.-..++..||...+..|+++...|+. -|.+++....+.+..+.....++......+..++..+
T Consensus 9 ~af~~iK~YYndIT~~NL~lIksLKe-----------------ei~emkk~e~~~~k~m~ei~~eN~~L~epL~~a~~e~ 71 (201)
T PF13851_consen 9 KAFQEIKNYYNDITLNNLELIKSLKE-----------------EIAEMKKKEERNEKLMAEISQENKRLSEPLKKAEEEV 71 (201)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH-----------------HHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHH
Confidence 44677888999999999999988887 4667777777777778888888888888888888888
Q ss_pred HHHHHHHHHHHHHHHhhHHHHHhhhHHHHHHHHHHHHHHHHHhhhhhhhHHH
Q 003570 384 KELKRELDKQAQEFEDDIDAVTHAKTEQEQRAIRAEEELRKTRWKNTVTAER 435 (810)
Q Consensus 384 ~sLeeEl~~Qaq~fe~Dldam~~~k~EQEqRAi~AEeaLrKtR~~na~taEr 435 (810)
..|.+.+. .|+.|..++...+. |....+.-|+..+|.+.+--.+
T Consensus 72 ~eL~k~L~----~y~kdK~~L~~~k~----rl~~~ek~l~~Lk~e~evL~qr 115 (201)
T PF13851_consen 72 EELRKQLK----NYEKDKQSLQNLKA----RLKELEKELKDLKWEHEVLEQR 115 (201)
T ss_pred HHHHHHHH----HHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHH
Confidence 87777665 58889888887764 5556678899999998775444
No 57
>KOG4807 consensus F-actin binding protein, regulates actin cytoskeletal organization [Cytoskeleton]
Probab=95.49 E-value=1.6 Score=49.54 Aligned_cols=186 Identities=21% Similarity=0.259 Sum_probs=115.4
Q ss_pred hhhHhhHHHHHHHHHHHHHHHHHHhHHHh--HhhHhHHHHHHHHHHHHHHHHH---HHHHHHhhHHHHHhhhHHHHHHHH
Q 003570 342 IESLATIKELESQSERLEDKIKQQSEEYS--ESLISINELECQVKELKRELDK---QAQEFEDDIDAVTHAKTEQEQRAI 416 (810)
Q Consensus 342 S~~~~~i~eLe~qve~LE~eLk~q~~efS--esL~tI~eLE~qv~sLeeEl~~---Qaq~fe~Dldam~~~k~EQEqRAi 416 (810)
+.++.-|.+|.-|-++=-++|++-....- +.-.||+..|+-..--.+||+- +.+++-.|.+
T Consensus 348 etHQkkiEdLQRqHqRELekLreEKdrLLAEETAATiSAIEAMKnAhrEEmeRELeKsqSvnsdve-------------- 413 (593)
T KOG4807|consen 348 ETHQKKIEDLQRQHQRELEKLREEKDRLLAEETAATISAIEAMKNAHREEMERELEKSQSVNSDVE-------------- 413 (593)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhhhhHHHHHHHHHHHHHHHHHHHhhhccccChH--------------
Confidence 34566778888887776677766555442 4567788777644433333332 2345555555
Q ss_pred HHHHHHHHHhhhhhhhHHHHHHHHHHHHHHhhhhhhhhHHHHHHHHHHHHHHHhhHHHHHHHHHHhHHHHhhhhhhhhcc
Q 003570 417 RAEEELRKTRWKNTVTAERLQDEFRRLSVDMASKFDENEKLAMKAMTEANEQRMQKAHLEEMLQKANDELSLIKDQNGVK 496 (810)
Q Consensus 417 ~AEeaLrKtR~~na~taErLQeEf~~LS~qmsSt~eeNEklt~kA~~EaseLR~qk~~LEemLqk~neeL~~i~dq~e~k 496 (810)
+||+-++ -.++-+|+|+.-||.|-+.+|=+|=-++..+-+|---|| .|..|=
T Consensus 414 ----aLRrQyl---eelqsvqRELeVLSEQYSQKCLEnahLaqalEaerqaLR-----------qCQrEn---------- 465 (593)
T KOG4807|consen 414 ----ALRRQYL---EELQSVQRELEVLSEQYSQKCLENAHLAQALEAERQALR-----------QCQREN---------- 465 (593)
T ss_pred ----HHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-----------HHHHhh----------
Confidence 4555444 357789999999999999999999877665544444443 231111
Q ss_pred HHHHhHHHhhHHHHHHHHHHhhhhchhhhhHHhhhHHHHHHhHHHHHHHHHHHHHHHHHhhhhhhhcccccCCCCCCccc
Q 003570 497 LQELSDQLEQKDKQIQKMYLELDHSSSQLIDEHKSEAQKHEALSTEIHMLRTEIEKLRKEQYNLSEHGKRRDDNKPKVST 576 (810)
Q Consensus 497 l~eL~~qld~k~k~ie~m~~Ele~kS~qle~~kk~~ee~~~a~s~EI~~Lk~eie~L~~e~~~l~e~~~~~d~e~~k~s~ 576 (810)
+.+-+|..+.++.++.||..|+.=|.-=---..+= +-+ -++.
T Consensus 466 -----------------------------QELnaHNQELnnRLaaEItrLRtlltgdGgGtGsp--------laq-gkda 507 (593)
T KOG4807|consen 466 -----------------------------QELNAHNQELNNRLAAEITRLRTLLTGDGGGTGSP--------LAQ-GKDA 507 (593)
T ss_pred -----------------------------HHHHHHHHHHhhHHHHHHHHHHHHhccCCCCCCCc--------ccc-Ccch
Confidence 11236788889999999999988764100000010 001 2456
Q ss_pred chhhHHHhhhhhhhhhHHHHHHHHHHHHHHH
Q 003570 577 GETDMLIQKWNRERDDLEKKFASAKQEAAKA 607 (810)
Q Consensus 577 ~e~~~~lq~~~~er~el~~~~a~~kkeae~~ 607 (810)
.|.+.+|--...|+.-|..+|+++|+|..++
T Consensus 508 yELEVLLRVKEsEiQYLKqEissLkDELQta 538 (593)
T KOG4807|consen 508 YELEVLLRVKESEIQYLKQEISSLKDELQTA 538 (593)
T ss_pred hhHHHHHHhhHHHHHHHHHHHHHHHHHHHHH
Confidence 6788888877777777777777666665443
No 58
>PF05010 TACC: Transforming acidic coiled-coil-containing protein (TACC); InterPro: IPR007707 This family contains the proteins TACC 1, 2 and 3, found concentrated in the centrosomes of eukaryotes which may play a conserved role in organising centrosomal microtubules. The human TACC proteins have been linked to cancer and TACC2 has been identified as a possible tumour suppressor (AZU-1) [].
Probab=95.48 E-value=3.8 Score=42.63 Aligned_cols=168 Identities=20% Similarity=0.300 Sum_probs=111.7
Q ss_pred HHHHHHHHHHHhHHHhHhhHhHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHhhhHHHHHHHHHHHHHHHHHhhhhhhhHH
Q 003570 355 SERLEDKIKQQSEEYSESLISINELECQVKELKRELDKQAQEFEDDIDAVTHAKTEQEQRAIRAEEELRKTRWKNTVTAE 434 (810)
Q Consensus 355 ve~LE~eLk~q~~efSesL~tI~eLE~qv~sLeeEl~~Qaq~fe~Dldam~~~k~EQEqRAi~AEeaLrKtR~~na~taE 434 (810)
+..|=.+...+...+......|.++|.-|..|-.+...+.......+..+..++-..-.-....|.++.
T Consensus 25 ~~~l~~k~~e~~~~~~~m~~i~~e~Ek~i~~~i~e~~~~~~~~~~~i~~~~~erdq~~~dL~s~E~sfs----------- 93 (207)
T PF05010_consen 25 EQELKKKYEELHKENQEMRKIMEEYEKTIAQMIEEKQKQKELSEAEIQKLLKERDQAYADLNSLEKSFS----------- 93 (207)
T ss_pred HHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHhhHHhHHHHHHHHHhhHHHHHHHHHHHHhhHH-----------
Confidence 334444555556666677777778888777777777777777777776666554432222222222222
Q ss_pred HHHHHHHHHHHHhhhhhhhhHHHHHHHHHHH-H-------HHHhhHHHHHHHHHHhHHHHhhhhhhhhccHHHHhHHHhh
Q 003570 435 RLQDEFRRLSVDMASKFDENEKLAMKAMTEA-N-------EQRMQKAHLEEMLQKANDELSLIKDQNGVKLQELSDQLEQ 506 (810)
Q Consensus 435 rLQeEf~~LS~qmsSt~eeNEklt~kA~~Ea-s-------eLR~qk~~LEemLqk~neeL~~i~dq~e~kl~eL~~qld~ 506 (810)
-|-.-|.+ ..+|...|-.||-...+++.+. . ...+=++.-++.|..||++|..++..+...+--|..+|..
T Consensus 94 dl~~ryek-~K~vi~~~k~NEE~Lkk~~~ey~~~l~~~eqry~aLK~hAeekL~~ANeei~~v~~~~~~e~~aLqa~lkk 172 (207)
T PF05010_consen 94 DLHKRYEK-QKEVIEGYKKNEETLKKCIEEYEERLKKEEQRYQALKAHAEEKLEKANEEIAQVRSKHQAELLALQASLKK 172 (207)
T ss_pred HHHHHHHH-HHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHH
Confidence 22222222 3567778888998888888662 2 2334567889999999999999999999999999888887
Q ss_pred HHHHHHHHHHhhhhchhhhhHHhhhHHH
Q 003570 507 KDKQIQKMYLELDHSSSQLIDEHKSEAQ 534 (810)
Q Consensus 507 k~k~ie~m~~Ele~kS~qle~~kk~~ee 534 (810)
-.-.+..+-..|+-|+++-+.+-+-=++
T Consensus 173 ~e~~~~SLe~~LeQK~kEn~ELtkICDe 200 (207)
T PF05010_consen 173 EEMKVQSLEESLEQKTKENEELTKICDE 200 (207)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 7777777777777777766555443333
No 59
>PRK11637 AmiB activator; Provisional
Probab=95.40 E-value=5.7 Score=44.11 Aligned_cols=54 Identities=15% Similarity=0.265 Sum_probs=25.9
Q ss_pred HHHHHHHHHHhhhhchhhhhHHhhhHHHHHHhHHHHHHHHHHHHHHHHHhhhhh
Q 003570 507 KDKQIQKMYLELDHSSSQLIDEHKSEAQKHEALSTEIHMLRTEIEKLRKEQYNL 560 (810)
Q Consensus 507 k~k~ie~m~~Ele~kS~qle~~kk~~ee~~~a~s~EI~~Lk~eie~L~~e~~~l 560 (810)
....++....+++..-..|+.++.........|..++....+++..|..+...|
T Consensus 192 ~~~~l~~~~~e~~~~k~~L~~~k~e~~~~l~~L~~~~~~~~~~l~~l~~~~~~L 245 (428)
T PRK11637 192 KQSQQKTLLYEQQAQQQKLEQARNERKKTLTGLESSLQKDQQQLSELRANESRL 245 (428)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333334444444444445555555555555555555555555555444444443
No 60
>PRK09039 hypothetical protein; Validated
Probab=95.29 E-value=0.15 Score=55.61 Aligned_cols=142 Identities=18% Similarity=0.217 Sum_probs=91.7
Q ss_pred HhHHHhhHHHHHHHHHHhhhhchhhhhHHhhhHHHHHHhHHHHHHHHHHHHHHHHHhhhhhhhcccccCCCCCCcccchh
Q 003570 500 LSDQLEQKDKQIQKMYLELDHSSSQLIDEHKSEAQKHEALSTEIHMLRTEIEKLRKEQYNLSEHGKRRDDNKPKVSTGET 579 (810)
Q Consensus 500 L~~qld~k~k~ie~m~~Ele~kS~qle~~kk~~ee~~~a~s~EI~~Lk~eie~L~~e~~~l~e~~~~~d~e~~k~s~~e~ 579 (810)
|+.+|+-+.+++.++..+|.+-+..| -.+......+..+|..|++.++.+...+..|-..
T Consensus 44 Ls~~i~~~~~eL~~L~~qIa~L~e~L----~le~~~~~~l~~~l~~l~~~l~~a~~~r~~Le~~---------------- 103 (343)
T PRK09039 44 LSREISGKDSALDRLNSQIAELADLL----SLERQGNQDLQDSVANLRASLSAAEAERSRLQAL---------------- 103 (343)
T ss_pred HHHHHhhHHHHHHHHHHHHHHHHHHH----HHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHH----------------
Confidence 45555556666666555555533333 4455555666666666666666554444433111
Q ss_pred hHHHhhhhhhhhhHHHHHHHHHHHHHHHHHHHHhhhccCchhHHHHhhHHHHHHHHHHHHHHHHhhhhHHHHHhhHHHHH
Q 003570 580 DMLIQKWNRERDDLEKKFASAKQEAAKAHEELISMRSLKGENEMLIGNLQAEVENLKVQQNKLQNSLIEEKLEKDNLAKQ 659 (810)
Q Consensus 580 ~~~lq~~~~er~el~~~~a~~kkeae~~~~EL~~m~~~kdEkE~~i~~LqsE~e~lk~Q~~~LK~sL~~ee~EKe~l~kQ 659 (810)
++.... ..+.+...+..+..+|...+..-.|.-..+..|+.+|++||.|...|...|..-+......+.|
T Consensus 104 ---~~~~~~-------~~~~~~~~~~~l~~~L~~~k~~~se~~~~V~~L~~qI~aLr~Qla~le~~L~~ae~~~~~~~~~ 173 (343)
T PRK09039 104 ---LAELAG-------AGAAAEGRAGELAQELDSEKQVSARALAQVELLNQQIAALRRQLAALEAALDASEKRDRESQAK 173 (343)
T ss_pred ---Hhhhhh-------hcchHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 010001 1113333444455777777777788888899999999999999999999999888888888999
Q ss_pred HHHHHHHHHhhH
Q 003570 660 VFQLKDELQKKK 671 (810)
Q Consensus 660 v~qLk~eL~KKe 671 (810)
+..|+..|...-
T Consensus 174 i~~L~~~L~~a~ 185 (343)
T PRK09039 174 IADLGRRLNVAL 185 (343)
T ss_pred HHHHHHHHHHHH
Confidence 999988887763
No 61
>KOG0977 consensus Nuclear envelope protein lamin, intermediate filament superfamily [Cell cycle control, cell division, chromosome partitioning; Nuclear structure]
Probab=95.13 E-value=9.2 Score=44.99 Aligned_cols=206 Identities=19% Similarity=0.250 Sum_probs=104.5
Q ss_pred HhhHHHHHHHHHHHHHHHHHHhHHHhHhhHhHHHHHHH---HHHHHHHHHHHHHHHHhhHHHHHhhhHHH--HHHHHHHH
Q 003570 345 LATIKELESQSERLEDKIKQQSEEYSESLISINELECQ---VKELKRELDKQAQEFEDDIDAVTHAKTEQ--EQRAIRAE 419 (810)
Q Consensus 345 ~~~i~eLe~qve~LE~eLk~q~~efSesL~tI~eLE~q---v~sLeeEl~~Qaq~fe~Dldam~~~k~EQ--EqRAi~AE 419 (810)
.+-++-+..-+..+|.+++-.+.+.+---..|..+..+ =..|.-++..+.|.+..+|+.+.+.+..- |.++..+-
T Consensus 154 eAe~~~~krr~~~le~e~~~Lk~en~rl~~~l~~~r~~ld~Etllr~d~~n~~q~Lleel~f~~~~h~~eI~e~~~~~~r 233 (546)
T KOG0977|consen 154 EAEINTLKRRIKALEDELKRLKAENSRLREELARARKQLDDETLLRVDLQNRVQTLLEELAFLKRIHKQEIEEERRKARR 233 (546)
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHhccHHHHHHHHHHHhh
Confidence 34444444555566666666666555444433333322 22344555666666666666666544321 11111111
Q ss_pred HHHHHHhhhhhhhHHHHHHHHHHHHHHhhhhhhhhHHHHHHHHHHHHHHHhhHHHHH-----HHHHHhHHHHhhhhh---
Q 003570 420 EELRKTRWKNTVTAERLQDEFRRLSVDMASKFDENEKLAMKAMTEANEQRMQKAHLE-----EMLQKANDELSLIKD--- 491 (810)
Q Consensus 420 eaLrKtR~~na~taErLQeEf~~LS~qmsSt~eeNEklt~kA~~EaseLR~qk~~LE-----emLqk~neeL~~i~d--- 491 (810)
+.- +-.-+-+..++..-=..|-.-|+.+=+.+.+.|.-.-..+.++..-- .-...+.+||..++.
T Consensus 234 d~t-------~~~r~~F~~eL~~Ai~eiRaqye~~~~~nR~diE~~Y~~kI~~i~~~~~~~~~~~~~~rEEl~~~R~~i~ 306 (546)
T KOG0977|consen 234 DTT-------ADNREYFKNELALAIREIRAQYEAISRQNRKDIESWYKRKIQEIRTSAERANVEQNYAREELRRIRSRIS 306 (546)
T ss_pred ccc-------ccchHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHhhhccccchhHHHHHHHHHHHhccc
Confidence 110 11111222222222223334455544445555544444444433310 112345577776543
Q ss_pred hhhccHHHHhHHHhhHHHHHHHHHHhhhhchhhhhHHhhhHHHHHHhHHHHHHHHHHHHHHHHHhhhhhhhcc
Q 003570 492 QNGVKLQELSDQLEQKDKQIQKMYLELDHSSSQLIDEHKSEAQKHEALSTEIHMLRTEIEKLRKEQYNLSEHG 564 (810)
Q Consensus 492 q~e~kl~eL~~qld~k~k~ie~m~~Ele~kS~qle~~kk~~ee~~~a~s~EI~~Lk~eie~L~~e~~~l~e~~ 564 (810)
...+||.+|-..-....++|+.| -.||..-++.-++...+...+|..++.+...|.+|...|....
T Consensus 307 ~Lr~klselE~~n~~L~~~I~dL-------~~ql~e~~r~~e~~L~~kd~~i~~mReec~~l~~Elq~LlD~k 372 (546)
T KOG0977|consen 307 GLRAKLSELESRNSALEKRIEDL-------EYQLDEDQRSFEQALNDKDAEIAKMREECQQLSVELQKLLDTK 372 (546)
T ss_pred chhhhhccccccChhHHHHHHHH-------HhhhhhhhhhhhhhhhhHHHHHHHHHHHHHHHHHHHHHhhchH
Confidence 23455555555555566666555 5566666677777788888888888888888887777764443
No 62
>PF04849 HAP1_N: HAP1 N-terminal conserved region; InterPro: IPR006933 This family is defined by an N-terminal conserved region found in several huntingtin-associated protein 1 (HAP1) homologues. HAP1 binds to huntingtin in a polyglutamine repeat-length-dependent manner. However, its possible role in the pathogenesis of Huntingtons disease is unclear. This family also includes a similar N-terminal conserved region from hypothetical protein products of ALS2CR3 genes found in the human juvenile amyotrophic lateral sclerosis critical region 2q33-2q34 [].
Probab=94.95 E-value=7.3 Score=42.90 Aligned_cols=232 Identities=25% Similarity=0.300 Sum_probs=121.8
Q ss_pred HHHHHHHHHHhhhhhhHHHHHHHHHHH-HHHhhhhhhHHHHHHhhHHhhhHHHHHHHHhhhhhhhhHHHHhhhhhhhhhh
Q 003570 114 KLKNEIAVMMRQVELSELELLSLRKQV-AKESKRAQDQTRQIISLSSERDALTIECEQLRKQNSIDIAEIERRLQSEEHL 192 (810)
Q Consensus 114 kLKsE~~~l~Rq~e~selELQtLRKQi-~KESKRgqdLsrEv~~lk~ERD~Lk~EcEqLksqk~~~ea~~~~~lq~e~D~ 192 (810)
+.-..|.++.|--+--+-||+.-- .| --=-++.++|+..+..+.+.=.+....+.||+-+-.+... =|++..+
T Consensus 59 kty~Didavt~lLeEkerDLelaA-~iGqsLl~~N~~L~~~~~~le~~L~~~~e~v~qLrHeL~~kde----LL~~ys~- 132 (306)
T PF04849_consen 59 KTYNDIDAVTRLLEEKERDLELAA-RIGQSLLEQNQDLSERNEALEEQLGAALEQVEQLRHELSMKDE----LLQIYSN- 132 (306)
T ss_pred cchhhHHHHHHHHHHHhhhHHHHH-HHhHHHHHhcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHhcCc-
Confidence 445577778877776666665321 11 0001233455555555555555555566666652221111 1111111
Q ss_pred HHHHHHHHHHhhhhhhcchhhh-----------hhhhhhhhhhHHHHHHHHHHHHHHHHhhhhhhhhhhhhhhhhhhhhh
Q 003570 193 KFLQEEIREELNYEKEVSAHLR-----------LQLEKTQDSNAELILAVKDLNEMLEQKNMEISSLSSKLEESKLVRED 261 (810)
Q Consensus 193 ~~llEElr~EL~yEKelNaNL~-----------LQLqKTQESNsELilAVqDLeeMLEqKn~EIs~ls~~~~e~~~~~ed 261 (810)
-.++-.++-..+..++ ++|.-.| --+++||+--.+...|.+.|.......+ ..+-
T Consensus 133 ------~~ee~~~~~~~~~~~~~~~~~~~~~~~~~le~Lq-------~Klk~LEeEN~~LR~Ea~~L~~et~~~E-ekEq 198 (306)
T PF04849_consen 133 ------DDEESEPESSESTPLRRNESSLSSQKCIQLEALQ-------EKLKSLEEENEQLRSEASQLKTETDTYE-EKEQ 198 (306)
T ss_pred ------HhhhcccccCCCccccccccccccccchhHHHHH-------HHHHHHHHHHHHHHHHHHHhhHHHhhcc-HHHH
Confidence 1123333333333331 2222222 2366777777777777777765444322 2234
Q ss_pred HHHHHHHHhhccCch-hhHHHHHHHHHhhhHHHHhhhhHHHHHHHHHHHHHHHHHHHhhhhhhhhHHHHHHHHhhhhhhh
Q 003570 262 QLALEALAKERNKDK-EVDMLKQKIRDQGDEIQFFKKHAEDLEIYIKQLTEDCQVLEQENQCLTSKLEKIQQQESMKSRE 340 (810)
Q Consensus 262 q~ale~Lvke~~~~~-E~~~LkqKI~DL~~Eie~ykkerEeLe~~ieQL~~D~E~LkqEN~~ls~kLEq~q~Qeql~~~E 340 (810)
++ +.+.|+.-..|+ .+..|.+=|..-..+...+.++...|-.+|-.|..-|-.+..||-+++..|..+.
T Consensus 199 qL-v~dcv~QL~~An~qia~LseELa~k~Ee~~rQQEEIt~LlsqivdlQ~r~k~~~~EnEeL~q~L~~sk--------- 268 (306)
T PF04849_consen 199 QL-VLDCVKQLSEANQQIASLSEELARKTEENRRQQEEITSLLSQIVDLQQRCKQLAAENEELQQHLQASK--------- 268 (306)
T ss_pred HH-HHHHHHHhhhcchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHH---------
Confidence 44 455677655542 3344443333333344444455555555555555555555555555554444422
Q ss_pred hhhhHhhHHHHHHHHHHHHHHHHHHhHHHhHhhHhHHHHHHHHHHHH
Q 003570 341 CIESLATIKELESQSERLEDKIKQQSEEYSESLISINELECQVKELK 387 (810)
Q Consensus 341 cS~~~~~i~eLe~qve~LE~eLk~q~~efSesL~tI~eLE~qv~sLe 387 (810)
.-=..|-.+|......|.+|+....+.+.+++.+.
T Consensus 269 ------------e~Q~~L~aEL~elqdkY~E~~~mL~EaQEElk~lR 303 (306)
T PF04849_consen 269 ------------ESQRQLQAELQELQDKYAECMAMLHEAQEELKTLR 303 (306)
T ss_pred ------------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 11234678899999999999999999999998875
No 63
>KOG0977 consensus Nuclear envelope protein lamin, intermediate filament superfamily [Cell cycle control, cell division, chromosome partitioning; Nuclear structure]
Probab=94.90 E-value=11 Score=44.52 Aligned_cols=194 Identities=21% Similarity=0.225 Sum_probs=108.4
Q ss_pred HHHHHHHHhhHHHHHHHHHHhHHHHhh---hhhhhhccHHHHhHHHhhHHHHHHHHHHhhhhchhhhhHHhhhHHHHHHh
Q 003570 462 MTEANEQRMQKAHLEEMLQKANDELSL---IKDQNGVKLQELSDQLEQKDKQIQKMYLELDHSSSQLIDEHKSEAQKHEA 538 (810)
Q Consensus 462 ~~EaseLR~qk~~LEemLqk~neeL~~---i~dq~e~kl~eL~~qld~k~k~ie~m~~Ele~kS~qle~~kk~~ee~~~a 538 (810)
--|...|+.++..|..-|+.+..+|.. .+.++..++++|...|+|+...-++-..|+-.+-..= --..-.+.+...
T Consensus 168 e~e~~~Lk~en~rl~~~l~~~r~~ld~Etllr~d~~n~~q~Lleel~f~~~~h~~eI~e~~~~~~rd-~t~~~r~~F~~e 246 (546)
T KOG0977|consen 168 EDELKRLKAENSRLREELARARKQLDDETLLRVDLQNRVQTLLEELAFLKRIHKQEIEEERRKARRD-TTADNREYFKNE 246 (546)
T ss_pred HHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHhccHHHHHHHHHHHhhc-ccccchHHHHHH
Confidence 456778888888888888888776643 4577888888999989888765555544433221110 001233344444
Q ss_pred HHHHHHHHHHHHHHHHHhhhhhhhcccccCCCCCCcccchhhHHHhhhhhhhhhHHHHHHHHHHHHHHHHHHHHhhhc--
Q 003570 539 LSTEIHMLRTEIEKLRKEQYNLSEHGKRRDDNKPKVSTGETDMLIQKWNRERDDLEKKFASAKQEAAKAHEELISMRS-- 616 (810)
Q Consensus 539 ~s~EI~~Lk~eie~L~~e~~~l~e~~~~~d~e~~k~s~~e~~~~lq~~~~er~el~~~~a~~kkeae~~~~EL~~m~~-- 616 (810)
|..=|+.++++-+.- +.++ |.|+|.. -..++.++.+-....--....+.+||-.||.
T Consensus 247 L~~Ai~eiRaqye~~-------~~~n-R~diE~~-------------Y~~kI~~i~~~~~~~~~~~~~~rEEl~~~R~~i 305 (546)
T KOG0977|consen 247 LALAIREIRAQYEAI-------SRQN-RKDIESW-------------YKRKIQEIRTSAERANVEQNYAREELRRIRSRI 305 (546)
T ss_pred HHHHHHHHHHHHHHH-------HHHh-HHHHHHH-------------HHHHHHHHHhhhccccchhHHHHHHHHHHHhcc
Confidence 444455555554422 2221 1111110 0111222221111111223334555555554
Q ss_pred -----cCchhHHHHhhHHHHHHHHHHHHHHHHh----hhhHHHHHhhHHHHHHHHHHHHHHhhHHHHHhh
Q 003570 617 -----LKGENEMLIGNLQAEVENLKVQQNKLQN----SLIEEKLEKDNLAKQVFQLKDELQKKKEEINRT 677 (810)
Q Consensus 617 -----~kdEkE~~i~~LqsE~e~lk~Q~~~LK~----sL~~ee~EKe~l~kQv~qLk~eL~KKe~~~~~~ 677 (810)
-=-+=|..-..|-..|+.|+.|.++-+. .|...+.+..+|+.+.-+|-.||++-=|...++
T Consensus 306 ~~Lr~klselE~~n~~L~~~I~dL~~ql~e~~r~~e~~L~~kd~~i~~mReec~~l~~Elq~LlD~ki~L 375 (546)
T KOG0977|consen 306 SGLRAKLSELESRNSALEKRIEDLEYQLDEDQRSFEQALNDKDAEIAKMREECQQLSVELQKLLDTKISL 375 (546)
T ss_pred cchhhhhccccccChhHHHHHHHHHhhhhhhhhhhhhhhhhHHHHHHHHHHHHHHHHHHHHHhhchHhHH
Confidence 3344555555666666777766666554 356677888899999999999998877666554
No 64
>COG1579 Zn-ribbon protein, possibly nucleic acid-binding [General function prediction only]
Probab=94.80 E-value=0.35 Score=51.10 Aligned_cols=71 Identities=25% Similarity=0.343 Sum_probs=56.9
Q ss_pred HHhhhccCchhHHHHhhHHHHHHHHHHHHHHHHhhhhHHHHHhhHHHHHHHHHHHHHHhhHHHHHhhhhcc
Q 003570 611 LISMRSLKGENEMLIGNLQAEVENLKVQQNKLQNSLIEEKLEKDNLAKQVFQLKDELQKKKEEINRTGKGL 681 (810)
Q Consensus 611 L~~m~~~kdEkE~~i~~LqsE~e~lk~Q~~~LK~sL~~ee~EKe~l~kQv~qLk~eL~KKe~~~~~~ekkl 681 (810)
|..+.--++--+..++.-+-.|..+++....++..+..-+.+++.+..||+++..++.+-.+-+...+.++
T Consensus 12 iq~lD~e~~rl~~~~~~~~~~l~k~~~e~e~~~~~~~~~~~e~e~le~qv~~~e~ei~~~r~r~~~~e~kl 82 (239)
T COG1579 12 IQKLDLEKDRLEPRIKEIRKALKKAKAELEALNKALEALEIELEDLENQVSQLESEIQEIRERIKRAEEKL 82 (239)
T ss_pred HHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33344444445555666677777778888888889999999999999999999999999999998888887
No 65
>TIGR03185 DNA_S_dndD DNA sulfur modification protein DndD. This model describes the DndB protein encoded by an operon associated with a sulfur-containing modification to DNA. The operon is sporadically distributed in bacteria, much like some restriction enzyme operons. DndD is described as a putative ATPase. The small number of examples known so far include species from among the Firmicutes, Actinomycetes, Proteobacteria, and Cyanobacteria.
Probab=94.73 E-value=11 Score=44.07 Aligned_cols=47 Identities=19% Similarity=0.333 Sum_probs=28.5
Q ss_pred hhHHHHHHHHHHHHHHHHHHhHHHhHhhHhHHHHHHHHHHHHHHHHH
Q 003570 346 ATIKELESQSERLEDKIKQQSEEYSESLISINELECQVKELKRELDK 392 (810)
Q Consensus 346 ~~i~eLe~qve~LE~eLk~q~~efSesL~tI~eLE~qv~sLeeEl~~ 392 (810)
..|..|...+..++.++.....+.-.....|..++.++..+++++.+
T Consensus 421 e~i~~l~e~l~~l~~~l~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~ 467 (650)
T TIGR03185 421 EQIAQLLEELGEAQNELFRSEAEIEELLRQLETLKEAIEALRKTLDE 467 (650)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34555556666666666666666666666666666666666665544
No 66
>PRK11637 AmiB activator; Provisional
Probab=94.64 E-value=9.2 Score=42.54 Aligned_cols=76 Identities=18% Similarity=0.313 Sum_probs=39.7
Q ss_pred hHHHHHHHHHHHHHHHHHHhHHHhHhhHhHHHHHHHHHHHHHHHH---HHHHHHHhhHHHHHhhhHHHHHHHHHHHHHH
Q 003570 347 TIKELESQSERLEDKIKQQSEEYSESLISINELECQVKELKRELD---KQAQEFEDDIDAVTHAKTEQEQRAIRAEEEL 422 (810)
Q Consensus 347 ~i~eLe~qve~LE~eLk~q~~efSesL~tI~eLE~qv~sLeeEl~---~Qaq~fe~Dldam~~~k~EQEqRAi~AEeaL 422 (810)
.+.+++.++..+..+++.....-++....|+.++.++..+...+. .+......++..+...-...+.+.......|
T Consensus 48 ~l~~l~~qi~~~~~~i~~~~~~~~~~~~~l~~l~~qi~~~~~~i~~~~~~i~~~~~ei~~l~~eI~~~q~~l~~~~~~l 126 (428)
T PRK11637 48 QLKSIQQDIAAKEKSVRQQQQQRASLLAQLKKQEEAISQASRKLRETQNTLNQLNKQIDELNASIAKLEQQQAAQERLL 126 (428)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344455555555555555555555566666666666665555443 2334444555555554444444444444333
No 67
>PF10473 CENP-F_leu_zip: Leucine-rich repeats of kinetochore protein Cenp-F/LEK1; InterPro: IPR019513 Cenp-F, a centromeric kinetochore, microtubule-binding protein consisting of two 1,600-amino acid-long coils, is essential for the full functioning of the mitotic checkpoint pathway [, ]. There are several leucine-rich repeats along the sequence of LEK1 that are considered to be zippers, though they do not appear to be binding DNA directly in this instance []. ; GO: 0008134 transcription factor binding, 0042803 protein homodimerization activity, 0045502 dynein binding
Probab=94.53 E-value=5.2 Score=39.57 Aligned_cols=136 Identities=16% Similarity=0.216 Sum_probs=83.5
Q ss_pred HHHHHhhhHHHHhhhhHHHHHHHHHHHHHHHHHHHhhhhhhhhHHHHHHHHhhhhhhhhhhhHhhHHHHHHHHHHHHHHH
Q 003570 283 QKIRDQGDEIQFFKKHAEDLEIYIKQLTEDCQVLEQENQCLTSKLEKIQQQESMKSRECIESLATIKELESQSERLEDKI 362 (810)
Q Consensus 283 qKI~DL~~Eie~ykkerEeLe~~ieQL~~D~E~LkqEN~~ls~kLEq~q~Qeql~~~EcS~~~~~i~eLe~qve~LE~eL 362 (810)
.|..+..+++...+.+.+.|+-+|.-|+.|.+........+..-.|.++ -+|.....-|..+-+...+|+.+|
T Consensus 3 ~K~l~v~~kLK~~~~e~dsle~~v~~LEreLe~~q~~~e~~~~daEn~k-------~eie~L~~el~~lt~el~~L~~EL 75 (140)
T PF10473_consen 3 EKFLHVEEKLKESESEKDSLEDHVESLERELEMSQENKECLILDAENSK-------AEIETLEEELEELTSELNQLELEL 75 (140)
T ss_pred HHHHHHHHHHHHHHHhHhhHHHHHHHHHHHHHHHHHhHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4556667777777888888888898888888888776666666666532 456666666666666667777777
Q ss_pred HHHhHHHhHhhHhHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHhhhHHHHHHHHHHHHHHHHHhhhhhhhHHHHHHHHHH
Q 003570 363 KQQSEEYSESLISINELECQVKELKRELDKQAQEFEDDIDAVTHAKTEQEQRAIRAEEELRKTRWKNTVTAERLQDEFRR 442 (810)
Q Consensus 363 k~q~~efSesL~tI~eLE~qv~sLeeEl~~Qaq~fe~Dldam~~~k~EQEqRAi~AEeaLrKtR~~na~taErLQeEf~~ 442 (810)
...+.+--+-.........+|..|+.-.. .|..-|.....+ -+++.=.-..+|+.||.+.+.
T Consensus 76 ~~l~sEk~~L~k~lq~~q~kv~eLE~~~~----~~~~~l~~~E~e--------------k~q~~e~~~~~ve~L~~ql~~ 137 (140)
T PF10473_consen 76 DTLRSEKENLDKELQKKQEKVSELESLNS----SLENLLQEKEQE--------------KVQLKEESKSAVEMLQKQLKE 137 (140)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhH----HHHHHHHHHHHH--------------HHHHHHHHHHHHHHHHHHHhh
Confidence 76666655444444444444444432221 233333322222 333334445678888888776
Q ss_pred H
Q 003570 443 L 443 (810)
Q Consensus 443 L 443 (810)
|
T Consensus 138 L 138 (140)
T PF10473_consen 138 L 138 (140)
T ss_pred h
Confidence 5
No 68
>PF04849 HAP1_N: HAP1 N-terminal conserved region; InterPro: IPR006933 This family is defined by an N-terminal conserved region found in several huntingtin-associated protein 1 (HAP1) homologues. HAP1 binds to huntingtin in a polyglutamine repeat-length-dependent manner. However, its possible role in the pathogenesis of Huntingtons disease is unclear. This family also includes a similar N-terminal conserved region from hypothetical protein products of ALS2CR3 genes found in the human juvenile amyotrophic lateral sclerosis critical region 2q33-2q34 [].
Probab=94.50 E-value=9.4 Score=42.10 Aligned_cols=229 Identities=21% Similarity=0.280 Sum_probs=134.9
Q ss_pred hhHHHHHHHHHHhhhhhhcchhhhhhh-hhhhhhhHHHHHHHHHHHHHHHHhhhhhhhhhhhhhhhhhhhhhHHHHHHHH
Q 003570 191 HLKFLQEEIREELNYEKEVSAHLRLQL-EKTQDSNAELILAVKDLNEMLEQKNMEISSLSSKLEESKLVREDQLALEALA 269 (810)
Q Consensus 191 D~~~llEElr~EL~yEKelNaNL~LQL-qKTQESNsELilAVqDLeeMLEqKn~EIs~ls~~~~e~~~~~edq~ale~Lv 269 (810)
.+..+|+| |+-...|.-.+ |-.-+.|..|---+..|+++|......|..|.-.+.-. ++|.
T Consensus 66 avt~lLeE--------kerDLelaA~iGqsLl~~N~~L~~~~~~le~~L~~~~e~v~qLrHeL~~k----------deLL 127 (306)
T PF04849_consen 66 AVTRLLEE--------KERDLELAARIGQSLLEQNQDLSERNEALEEQLGAALEQVEQLRHELSMK----------DELL 127 (306)
T ss_pred HHHHHHHH--------HhhhHHHHHHHhHHHHHhcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----------HHHH
Confidence 34466776 44444555555 56677888888888889999888888888765444321 1121
Q ss_pred hh-------ccC-chhhHHHHHHHHHhhhHHHHhhhhHHHHHHHHHHHHHHHHHHHhhhhhhhhHHHHHHHHhhhhhhhh
Q 003570 270 KE-------RNK-DKEVDMLKQKIRDQGDEIQFFKKHAEDLEIYIKQLTEDCQVLEQENQCLTSKLEKIQQQESMKSREC 341 (810)
Q Consensus 270 ke-------~~~-~~E~~~LkqKI~DL~~Eie~ykkerEeLe~~ieQL~~D~E~LkqEN~~ls~kLEq~q~Qeql~~~Ec 341 (810)
+- +.+ ......++....-. . .-..-..+.|..++..|+.++..|+.+=..|...-.+.+.++|.+|.+|
T Consensus 128 ~~ys~~~ee~~~~~~~~~~~~~~~~~~--~-~~~~~~le~Lq~Klk~LEeEN~~LR~Ea~~L~~et~~~EekEqqLv~dc 204 (306)
T PF04849_consen 128 QIYSNDDEESEPESSESTPLRRNESSL--S-SQKCIQLEALQEKLKSLEEENEQLRSEASQLKTETDTYEEKEQQLVLDC 204 (306)
T ss_pred HhcCcHhhhcccccCCCcccccccccc--c-cccchhHHHHHHHHHHHHHHHHHHHHHHHHhhHHHhhccHHHHHHHHHH
Confidence 11 000 00000111000000 0 0011345667777777777777777777777666666777888888888
Q ss_pred hhhHhhHHHHHHHHHHHHHHHHHHhHHHhHhhHhHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHhhhHHHHHHHHHHHHH
Q 003570 342 IESLATIKELESQSERLEDKIKQQSEEYSESLISINELECQVKELKRELDKQAQEFEDDIDAVTHAKTEQEQRAIRAEEE 421 (810)
Q Consensus 342 S~~~~~i~eLe~qve~LE~eLk~q~~efSesL~tI~eLE~qv~sLeeEl~~Qaq~fe~Dldam~~~k~EQEqRAi~AEea 421 (810)
..-+ .+--.||-.|-.+|-....++..-=-.|..|-++|-.|++-+.. ++.++.+.-+
T Consensus 205 v~QL---~~An~qia~LseELa~k~Ee~~rQQEEIt~LlsqivdlQ~r~k~-----------~~~EnEeL~q-------- 262 (306)
T PF04849_consen 205 VKQL---SEANQQIASLSEELARKTEENRRQQEEITSLLSQIVDLQQRCKQ-----------LAAENEELQQ-------- 262 (306)
T ss_pred HHHh---hhcchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-----------HhhhHHHHHH--------
Confidence 5333 34447788888888777777777777777777777666543321 2222222222
Q ss_pred HHHHhhhhhhhHHHHHHHHHHHHHHhhhhhhhhHHHHHHHHHHHHHHHhhHHHHHHHHHHhHHHHhhhh
Q 003570 422 LRKTRWKNTVTAERLQDEFRRLSVDMASKFDENEKLAMKAMTEANEQRMQKAHLEEMLQKANDELSLIK 490 (810)
Q Consensus 422 LrKtR~~na~taErLQeEf~~LS~qmsSt~eeNEklt~kA~~EaseLR~qk~~LEemLqk~neeL~~i~ 490 (810)
++..+-+..-.++ +|..+|+...+-.-+||+.+.+||+..+
T Consensus 263 ------------------------~L~~ske~Q~~L~----aEL~elqdkY~E~~~mL~EaQEElk~lR 303 (306)
T PF04849_consen 263 ------------------------HLQASKESQRQLQ----AELQELQDKYAECMAMLHEAQEELKTLR 303 (306)
T ss_pred ------------------------HHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 2222333333332 3477788888888899999999988744
No 69
>KOG0962 consensus DNA repair protein RAD50, ABC-type ATPase/SMC superfamily [Replication, recombination and repair]
Probab=94.34 E-value=22 Score=45.65 Aligned_cols=197 Identities=15% Similarity=0.207 Sum_probs=150.2
Q ss_pred HHHHHhHHHhHhhHhHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHhhhHHHHHHHHHHHHHHHHHhhhhhhhHHHHHHHH
Q 003570 361 KIKQQSEEYSESLISINELECQVKELKRELDKQAQEFEDDIDAVTHAKTEQEQRAIRAEEELRKTRWKNTVTAERLQDEF 440 (810)
Q Consensus 361 eLk~q~~efSesL~tI~eLE~qv~sLeeEl~~Qaq~fe~Dldam~~~k~EQEqRAi~AEeaLrKtR~~na~taErLQeEf 440 (810)
.||.-=.+++.+..++++|++ ++++.++...+.+.|...|+-+...|..++.---+-+..+++++-.+. -|+-+..++
T Consensus 169 ~LKkkfD~IF~~tky~KAld~-~kk~rkd~~~evk~~~~~l~~lk~~K~~~e~~~l~i~~~~~ki~~~ke-~v~e~e~e~ 246 (1294)
T KOG0962|consen 169 NLKKKFDDIFSATKYTKALDS-LKKLRKDQSQEVKTKKQELEHLKTLKERAEVLRLNIHSGQRKIEKSKE-EVSELENEL 246 (1294)
T ss_pred HHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHh
Confidence 455555677778888888874 889999999999999999999999998888877777889999987765 466777777
Q ss_pred HHHHHHhhhhhhhhHHHHHHHHHHHHHHHhhHHHHHHHHHHhHHHHhhhhhhhhccHHHHhHHHhhHHHHHHHHHHhhhh
Q 003570 441 RRLSVDMASKFDENEKLAMKAMTEANEQRMQKAHLEEMLQKANDELSLIKDQNGVKLQELSDQLEQKDKQIQKMYLELDH 520 (810)
Q Consensus 441 ~~LS~qmsSt~eeNEklt~kA~~EaseLR~qk~~LEemLqk~neeL~~i~dq~e~kl~eL~~qld~k~k~ie~m~~Ele~ 520 (810)
...-..+...+-..+ -..+.++++..|+.....+.+-+..-...+..+.++.--.+.++.---+.++..+++-..+++-
T Consensus 247 ~~~~~~i~ei~~~~~-el~k~~~~~~~l~~e~~~l~~~~~~l~~~i~~~~~~t~~~l~~~~~n~~~~~~~~~~~~~~~e~ 325 (1294)
T KOG0962|consen 247 GPIEAKIEEIEKSLK-ELEKLLKQVKLLDSEHKNLKKQISRLREKILKIFDGTDEELGELLSNFEERLEEMGEKLRELER 325 (1294)
T ss_pred hHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHhhcccccccchHHHHHHHHhHHHHHHHHHHhHHHHHH
Confidence 776666655554443 3467889999999999999999999999999888888777777766666677667777777777
Q ss_pred chhhhhHHhhhHHHHHHhHHHHHHHHHHHHHHHHHhhhhh
Q 003570 521 SSSQLIDEHKSEAQKHEALSTEIHMLRTEIEKLRKEQYNL 560 (810)
Q Consensus 521 kS~qle~~kk~~ee~~~a~s~EI~~Lk~eie~L~~e~~~l 560 (810)
++..++.....-...-..|--++..|.++.+-+..-++..
T Consensus 326 ~~~~l~~e~~~l~~~k~~~~~~~~~lq~e~~~~~~l~~~~ 365 (1294)
T KOG0962|consen 326 EISDLNEERSSLIQLKTELDLEQSELQAEAEFHQELKRQR 365 (1294)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 7777776666556666667777777777776555444444
No 70
>KOG1029 consensus Endocytic adaptor protein intersectin [Signal transduction mechanisms; Intracellular trafficking, secretion, and vesicular transport]
Probab=93.90 E-value=21 Score=43.89 Aligned_cols=79 Identities=20% Similarity=0.285 Sum_probs=49.1
Q ss_pred HHhhHHHHHHHHHHhHHHHhhhhh---hhhccHHHHhHHHhhHHHHHHHHHHhhhhchhhhhHHhhhHHHHHHhHHHHHH
Q 003570 468 QRMQKAHLEEMLQKANDELSLIKD---QNGVKLQELSDQLEQKDKQIQKMYLELDHSSSQLIDEHKSEAQKHEALSTEIH 544 (810)
Q Consensus 468 LR~qk~~LEemLqk~neeL~~i~d---q~e~kl~eL~~qld~k~k~ie~m~~Ele~kS~qle~~kk~~ee~~~a~s~EI~ 544 (810)
|-+.+++|.-.|...|..+..+.. +.++.+..-.+.|+..+++++.|.+|++.+-.+|.. -.++..-+--|-|
T Consensus 435 ~nak~~ql~~eletLn~k~qqls~kl~Dvr~~~tt~kt~ie~~~~q~e~~isei~qlqarikE----~q~kl~~l~~Ekq 510 (1118)
T KOG1029|consen 435 LNAKKKQLQQELETLNFKLQQLSGKLQDVRVDITTQKTEIEEVTKQRELMISEIDQLQARIKE----LQEKLQKLAPEKQ 510 (1118)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhhhhhhheeccchHHHHHHHhhhHHHHHHHHHHHHHHHHHH----HHHHHHhhhhHHH
Confidence 455566666666666665554321 245666666788999999999999998876655522 2334444555555
Q ss_pred HHHHHH
Q 003570 545 MLRTEI 550 (810)
Q Consensus 545 ~Lk~ei 550 (810)
.|...+
T Consensus 511 ~l~~ql 516 (1118)
T KOG1029|consen 511 ELNHQL 516 (1118)
T ss_pred HHHHHH
Confidence 554444
No 71
>PF05667 DUF812: Protein of unknown function (DUF812); InterPro: IPR008530 This family consists of several eukaryotic proteins of unknown function.
Probab=93.64 E-value=20 Score=42.64 Aligned_cols=176 Identities=22% Similarity=0.369 Sum_probs=113.0
Q ss_pred chhhHHHHHHHHHhhhHHHHhhhhHHHHHHHHHHHHHHHHHHHhhhhhhhhHHHHHHHHhhhhhhhh-hhhHhhHHHHHH
Q 003570 275 DKEVDMLKQKIRDQGDEIQFFKKHAEDLEIYIKQLTEDCQVLEQENQCLTSKLEKIQQQESMKSREC-IESLATIKELES 353 (810)
Q Consensus 275 ~~E~~~LkqKI~DL~~Eie~ykkerEeLe~~ieQL~~D~E~LkqEN~~ls~kLEq~q~Qeql~~~Ec-S~~~~~i~eLe~ 353 (810)
..++..|+..|.++...|+.+..+.+.|...+.|+..+.+..+.++-.+...+.-. . ++.+- ......|..|++
T Consensus 327 ~~el~~l~~~l~~l~~~i~~~~~~~~~l~~~~~q~~~e~~~~~~~~~~le~~~~l~---~--k~~~lL~d~e~ni~kL~~ 401 (594)
T PF05667_consen 327 EQELEELQEQLDELESQIEELEAEIKMLKSSLKQLEEELEEKEAENEELEEELKLK---K--KTVELLPDAEENIAKLQA 401 (594)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---H--HHHHHhcCcHHHHHHHHH
Confidence 35888899999999999999999999999999999998888888776665443321 1 11111 122345555553
Q ss_pred HHH-------------------------HHHHHHHHHhHHHhHhhHhHHHHHHHHHHHHHHHHHHHH---HHHhhHHHHH
Q 003570 354 QSE-------------------------RLEDKIKQQSEEYSESLISINELECQVKELKRELDKQAQ---EFEDDIDAVT 405 (810)
Q Consensus 354 qve-------------------------~LE~eLk~q~~efSesL~tI~eLE~qv~sLeeEl~~Qaq---~fe~Dldam~ 405 (810)
.|+ +|.........+.+..+..|..+..+++.+..++..+.+ .+..+++.|.
T Consensus 402 ~v~~s~~rl~~L~~qWe~~R~pL~~e~r~lk~~~~~~~~e~~~~~~~ik~~r~~~k~~~~e~~~Kee~~~qL~~e~e~~~ 481 (594)
T PF05667_consen 402 LVEASEQRLVELAQQWEKHRAPLIEEYRRLKEKASNRESESKQKLQEIKELREEIKEIEEEIRQKEELYKQLVKELEKLP 481 (594)
T ss_pred HHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHhhcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCC
Confidence 333 333333344455667788999999999999999988776 4556666665
Q ss_pred hhh--HHHHHHHHHHHHHHHHHhhhhh------hhHHHHHHHHHHHHHHhhhhhhhhHHHH
Q 003570 406 HAK--TEQEQRAIRAEEELRKTRWKNT------VTAERLQDEFRRLSVDMASKFDENEKLA 458 (810)
Q Consensus 406 ~~k--~EQEqRAi~AEeaLrKtR~~na------~taErLQeEf~~LS~qmsSt~eeNEklt 458 (810)
... .-+=+|+. +....+|.-+. ...-.||+|+..|+-++--||..-+-++
T Consensus 482 k~~~Rs~Yt~RIl---EIv~NI~KQk~eI~KIl~DTr~lQkeiN~l~gkL~RtF~v~dEli 539 (594)
T PF05667_consen 482 KDVNRSAYTRRIL---EIVKNIRKQKEEIEKILSDTRELQKEINSLTGKLDRTFTVTDELI 539 (594)
T ss_pred CCCCHHHHHHHHH---HHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHH
Confidence 542 12223332 22333332221 2344799999999999998887654443
No 72
>KOG0996 consensus Structural maintenance of chromosome protein 4 (chromosome condensation complex Condensin, subunit C) [Chromatin structure and dynamics; Cell cycle control, cell division, chromosome partitioning]
Probab=93.63 E-value=28 Score=44.39 Aligned_cols=108 Identities=22% Similarity=0.316 Sum_probs=61.1
Q ss_pred cccchhhHHHhhhhhhhhhHHHHHHHHHHHHHHHHHHHHhhhccCchhH-------HHHhhHHHHHHHHHHHHHHHHhhh
Q 003570 574 VSTGETDMLIQKWNRERDDLEKKFASAKQEAAKAHEELISMRSLKGENE-------MLIGNLQAEVENLKVQQNKLQNSL 646 (810)
Q Consensus 574 ~s~~e~~~~lq~~~~er~el~~~~a~~kkeae~~~~EL~~m~~~kdEkE-------~~i~~LqsE~e~lk~Q~~~LK~sL 646 (810)
..+.-.+-.+++-+....+|++.+-.+.++++...+++..++.-..|-+ ..|.-+++++..++..|.+++++.
T Consensus 928 ~~i~~s~~~i~k~q~~l~~le~~~~~~e~e~~~L~e~~~~~~~k~~E~~~~~~e~~~~~~E~k~~~~~~k~~~e~i~k~~ 1007 (1293)
T KOG0996|consen 928 VAIKTSDRNIAKAQKKLSELEREIEDTEKELDDLTEELKGLEEKAAELEKEYKEAEESLKEIKKELRDLKSELENIKKSE 1007 (1293)
T ss_pred HHHhcCcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3344444455666666777777777777777777777776665544433 344455556666666666666555
Q ss_pred hHHHHHhhHHHHHHHHHHHHHHhhHHHHHhhhhcc
Q 003570 647 IEEKLEKDNLAKQVFQLKDELQKKKEEINRTGKGL 681 (810)
Q Consensus 647 ~~ee~EKe~l~kQv~qLk~eL~KKe~~~~~~ekkl 681 (810)
.+=..+-=-+.-++-...+++..-+-...-+++.+
T Consensus 1008 ~~lk~~rId~~~K~e~~~~~l~e~~~~~~~~~k~~ 1042 (1293)
T KOG0996|consen 1008 NELKAERIDIENKLEAINGELNEIESKIKQPEKEL 1042 (1293)
T ss_pred HHHHHhhccHHHHHHHHHHHHHHHHhhhhhHHHhh
Confidence 44444211144455555555555555555455443
No 73
>KOG4643 consensus Uncharacterized coiled-coil protein [Function unknown]
Probab=93.56 E-value=27 Score=43.97 Aligned_cols=79 Identities=22% Similarity=0.223 Sum_probs=62.3
Q ss_pred hhhhhhHHHHHHHHHHHHHHHHHHHHhhhccCchhHHHHhhHHHHHHHHHHHHHHHHhhhhHHHHHhhHHHHHHHHHHH
Q 003570 587 NRERDDLEKKFASAKQEAAKAHEELISMRSLKGENEMLIGNLQAEVENLKVQQNKLQNSLIEEKLEKDNLAKQVFQLKD 665 (810)
Q Consensus 587 ~~er~el~~~~a~~kkeae~~~~EL~~m~~~kdEkE~~i~~LqsE~e~lk~Q~~~LK~sL~~ee~EKe~l~kQv~qLk~ 665 (810)
..+-++|-..|--+++-...+..|++++-..+++-..-+.+.....+-+..+|-.|-..++.-+.|...|-+||..|+-
T Consensus 480 ~~et~el~~~iknlnk~L~~r~~elsrl~a~~~elkeQ~kt~~~qye~~~~k~eeLe~~l~~lE~ENa~LlkqI~~Lk~ 558 (1195)
T KOG4643|consen 480 EAETEELLNQIKNLNKSLNNRDLELSRLHALKNELKEQYKTCDIQYELLSNKLEELEELLGNLEEENAHLLKQIQSLKT 558 (1195)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHH
Confidence 3344445555556666667777888888888888888888888888888888888888999999999999999988876
No 74
>PRK04863 mukB cell division protein MukB; Provisional
Probab=93.48 E-value=33 Score=44.76 Aligned_cols=41 Identities=22% Similarity=0.346 Sum_probs=24.9
Q ss_pred HHHHHHHHHHHhhhhhhHHHHHHhhHHhhhHHHHHHHHhhh
Q 003570 133 LLSLRKQVAKESKRAQDQTRQIISLSSERDALTIECEQLRK 173 (810)
Q Consensus 133 LQtLRKQi~KESKRgqdLsrEv~~lk~ERD~Lk~EcEqLks 173 (810)
+...++.+.+.-.+-..+...+..+..-...|+.+++..+.
T Consensus 295 k~eA~kkLe~tE~nL~rI~diL~ELe~rL~kLEkQaEkA~k 335 (1486)
T PRK04863 295 LYTSRRQLAAEQYRLVEMARELAELNEAESDLEQDYQAASD 335 (1486)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34444555555555556666666666666666666666655
No 75
>PF09789 DUF2353: Uncharacterized coiled-coil protein (DUF2353); InterPro: IPR019179 Members of this family have been annotated as being coiled-coil domain-containing protein 149, however they currently have no known function.
Probab=93.25 E-value=12 Score=41.51 Aligned_cols=70 Identities=24% Similarity=0.340 Sum_probs=40.1
Q ss_pred HHHHHHHHHHHHHhHHHhHhhHhHHHHHHHHHHHHHHHHHHHH----HHHhhHHHHHhhhHHHHHHHHHHHHHHH
Q 003570 353 SQSERLEDKIKQQSEEYSESLISINELECQVKELKRELDKQAQ----EFEDDIDAVTHAKTEQEQRAIRAEEELR 423 (810)
Q Consensus 353 ~qve~LE~eLk~q~~efSesL~tI~eLE~qv~sLeeEl~~Qaq----~fe~Dldam~~~k~EQEqRAi~AEeaLr 423 (810)
.++.+|+-.++-..++-.+....=.+...++..|-.||+-=.- ++. |||++--+|.=+-+|..++++-..
T Consensus 140 ~q~~qLe~d~qs~lDEkeEl~~ERD~yk~K~~RLN~ELn~~L~g~~~riv-DIDaLi~ENRyL~erl~q~qeE~~ 213 (319)
T PF09789_consen 140 EQIEQLERDLQSLLDEKEELVTERDAYKCKAHRLNHELNYILNGDENRIV-DIDALIMENRYLKERLKQLQEEKE 213 (319)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCCCcc-cHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3334444444444444444444444445555555555543222 344 899999999988888888776543
No 76
>COG1340 Uncharacterized archaeal coiled-coil protein [Function unknown]
Probab=92.97 E-value=17 Score=40.00 Aligned_cols=162 Identities=18% Similarity=0.332 Sum_probs=97.6
Q ss_pred hhHHHHHHHHHhhhHHHHhhhhHHHHHHHHHHHHHHHHHHHhhhh-h----hhhHHHHHHHHhhhhh-hhhhh-hHhhHH
Q 003570 277 EVDMLKQKIRDQGDEIQFFKKHAEDLEIYIKQLTEDCQVLEQENQ-C----LTSKLEKIQQQESMKS-RECIE-SLATIK 349 (810)
Q Consensus 277 E~~~LkqKI~DL~~Eie~ykkerEeLe~~ieQL~~D~E~LkqEN~-~----ls~kLEq~q~Qeql~~-~EcS~-~~~~i~ 349 (810)
.+..++.+-..+..+|..|+..|.++...+.+|-.+|..|+...- . .+-+--+...+. |-+ -+-+. ++.-=.
T Consensus 56 ~~~elr~~rdeineev~elK~kR~ein~kl~eL~~~~~~l~e~~~~~~~~~~~~~~ler~i~~-Le~~~~T~~L~~e~E~ 134 (294)
T COG1340 56 KAQELREERDEINEEVQELKEKRDEINAKLQELRKEYRELKEKRNEFNLGGRSIKSLEREIER-LEKKQQTSVLTPEEER 134 (294)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhccCCCHHHHHHHHHH-HHHHHHhcCCChHHHH
Confidence 455666666777889999999999999999999999988776322 1 111111111111 111 12221 222122
Q ss_pred HHHHHHHHHHHHHH------HHhHHHhHhhHhHHHHHHHHHHHHHH---HHHHHHHHHhhHHHHHhhhHHHHHHHHHHHH
Q 003570 350 ELESQSERLEDKIK------QQSEEYSESLISINELECQVKELKRE---LDKQAQEFEDDIDAVTHAKTEQEQRAIRAEE 420 (810)
Q Consensus 350 eLe~qve~LE~eLk------~q~~efSesL~tI~eLE~qv~sLeeE---l~~Qaq~fe~Dldam~~~k~EQEqRAi~AEe 420 (810)
++-..+..|+.+|. .+...+-+.+..|..+...-..+++. +..|||.|..++-.+++.--+--.+|.-+++
T Consensus 135 ~lvq~I~~L~k~le~~~k~~e~~~~~~el~aei~~lk~~~~e~~eki~~la~eaqe~he~m~k~~~~~De~Rkeade~he 214 (294)
T COG1340 135 ELVQKIKELRKELEDAKKALEENEKLKELKAEIDELKKKAREIHEKIQELANEAQEYHEEMIKLFEEADELRKEADELHE 214 (294)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 23344444444332 24445555666777777777777754 5678999999999999988888888888777
Q ss_pred HHHHHhhhhhhhHHHHHHHHHHH
Q 003570 421 ELRKTRWKNTVTAERLQDEFRRL 443 (810)
Q Consensus 421 aLrKtR~~na~taErLQeEf~~L 443 (810)
.+-+.+ -.+..+-++|.-+
T Consensus 215 ~~ve~~----~~~~e~~ee~~~~ 233 (294)
T COG1340 215 EFVELS----KKIDELHEEFRNL 233 (294)
T ss_pred HHHHHH----HHhHHHHHHHHHH
Confidence 665443 3344444444433
No 77
>COG4942 Membrane-bound metallopeptidase [Cell division and chromosome partitioning]
Probab=92.79 E-value=22 Score=40.82 Aligned_cols=86 Identities=22% Similarity=0.329 Sum_probs=60.6
Q ss_pred HHHHHHHHHHHHHHHHHhHHHhHhhHhHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHhhhHHHHHHHHHHHHHHHHHhhh
Q 003570 349 KELESQSERLEDKIKQQSEEYSESLISINELECQVKELKRELDKQAQEFEDDIDAVTHAKTEQEQRAIRAEEELRKTRWK 428 (810)
Q Consensus 349 ~eLe~qve~LE~eLk~q~~efSesL~tI~eLE~qv~sLeeEl~~Qaq~fe~Dldam~~~k~EQEqRAi~AEeaLrKtR~~ 428 (810)
......+..++.+|..+.+.++.....|+.++..|.++..++- .+..|+..+....-..+.+.+..+.--
T Consensus 41 ~q~q~ei~~~~~~i~~~~~~~~kL~~~lk~~e~~i~~~~~ql~----~s~~~l~~~~~~I~~~~~~l~~l~~q~------ 110 (420)
T COG4942 41 KQIQKEIAALEKKIREQQDQRAKLEKQLKSLETEIASLEAQLI----ETADDLKKLRKQIADLNARLNALEVQE------ 110 (420)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHhHHHHHHhhHHHHHHHHHHHHHHH------
Confidence 4566899999999999999999999999999999988876654 566677666655555555443332221
Q ss_pred hhhhHHHHHHHHHHHHHHhhhhhh
Q 003570 429 NTVTAERLQDEFRRLSVDMASKFD 452 (810)
Q Consensus 429 na~taErLQeEf~~LS~qmsSt~e 452 (810)
.+.+.+|+.++..-|-
T Consensus 111 --------r~qr~~La~~L~A~~r 126 (420)
T COG4942 111 --------REQRRRLAEQLAALQR 126 (420)
T ss_pred --------HHHHHHHHHHHHHHHh
Confidence 4556666666665554
No 78
>KOG0980 consensus Actin-binding protein SLA2/Huntingtin-interacting protein Hip1 [Cytoskeleton]
Probab=92.77 E-value=33 Score=42.72 Aligned_cols=63 Identities=21% Similarity=0.231 Sum_probs=36.4
Q ss_pred CcchHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHhhhhhhHHHHHHhhHHhhhHHHHHHHHhhh
Q 003570 108 SDGSVEKLKNEIAVMMRQVELSELELLSLRKQVAKESKRAQDQTRQIISLSSERDALTIECEQLRK 173 (810)
Q Consensus 108 sd~~iEkLKsE~~~l~Rq~e~selELQtLRKQi~KESKRgqdLsrEv~~lk~ERD~Lk~EcEqLks 173 (810)
-+-.|+.|..|++++.-+..-... --|.-|.-=--+-.+|-.++...+-+++.-+.|||+||-
T Consensus 331 ~~~~~~~~~~e~~~~~~~l~~~~~---ear~~~~q~~~ql~~le~~~~e~q~~~qe~~~e~eqLr~ 393 (980)
T KOG0980|consen 331 RELQIEQLSREVAQLKAQLENLKE---EARRRIEQYENQLLALEGELQEQQREAQENREEQEQLRN 393 (980)
T ss_pred hhHHHHHHHHHHHHHhhhhhhHHH---HHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHH
Confidence 344677777777766554332222 222222222334456777777777777777788887775
No 79
>PF14662 CCDC155: Coiled-coil region of CCDC155
Probab=92.72 E-value=14 Score=38.49 Aligned_cols=100 Identities=28% Similarity=0.388 Sum_probs=64.9
Q ss_pred HHHHHHHHHHHHhhhhhhhhHHHHHHHHHHHHHHHhhHHHHHHHHHHh---HHHHhhhhhhhhccHHHHhHHHhhHHHHH
Q 003570 435 RLQDEFRRLSVDMASKFDENEKLAMKAMTEANEQRMQKAHLEEMLQKA---NDELSLIKDQNGVKLQELSDQLEQKDKQI 511 (810)
Q Consensus 435 rLQeEf~~LS~qmsSt~eeNEklt~kA~~EaseLR~qk~~LEemLqk~---neeL~~i~dq~e~kl~eL~~qld~k~k~i 511 (810)
+|++|...|-..|-.+-+.|=+++ .|...||.|-+.+--.|+.+ ++||.. +
T Consensus 19 ~L~~en~kL~~~ve~~ee~na~L~----~e~~~L~~q~~s~Qqal~~aK~l~eEled----------------------L 72 (193)
T PF14662_consen 19 KLADENAKLQRSVETAEEGNAQLA----EEITDLRKQLKSLQQALQKAKALEEELED----------------------L 72 (193)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHHHH----------------------H
Confidence 566666666665555555544443 45666777766554444444 333333 2
Q ss_pred HHHHHhhhhchhhhhHHhhhHHHHHHhHHHHHHHHHHHHHHHHHhhhhh
Q 003570 512 QKMYLELDHSSSQLIDEHKSEAQKHEALSTEIHMLRTEIEKLRKEQYNL 560 (810)
Q Consensus 512 e~m~~Ele~kS~qle~~kk~~ee~~~a~s~EI~~Lk~eie~L~~e~~~l 560 (810)
-.+.-.|+.....|-.|-|+-+.-...|..+|+.|..+..+|..+.+.+
T Consensus 73 k~~~~~lEE~~~~L~aq~rqlEkE~q~L~~~i~~Lqeen~kl~~e~~~l 121 (193)
T PF14662_consen 73 KTLAKSLEEENRSLLAQARQLEKEQQSLVAEIETLQEENGKLLAERDGL 121 (193)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHhhhhH
Confidence 2345567788888888888888888888888888888888777666555
No 80
>PF05667 DUF812: Protein of unknown function (DUF812); InterPro: IPR008530 This family consists of several eukaryotic proteins of unknown function.
Probab=92.60 E-value=9.8 Score=45.02 Aligned_cols=74 Identities=19% Similarity=0.204 Sum_probs=48.3
Q ss_pred hhccCchhHHHHhhHHHHHHHHHHHHHHHHhhhhHHHHHhhHHHHHHHHHHHHHHhhHHHHHhhhhcccccCCC
Q 003570 614 MRSLKGENEMLIGNLQAEVENLKVQQNKLQNSLIEEKLEKDNLAKQVFQLKDELQKKKEEINRTGKGLKKYGGP 687 (810)
Q Consensus 614 m~~~kdEkE~~i~~LqsE~e~lk~Q~~~LK~sL~~ee~EKe~l~kQv~qLk~eL~KKe~~~~~~ekklk~s~g~ 687 (810)
|..|..+=|..=.-|-.+++.|+..+++-..-....-.+-..++.++-.+..+++.|++....+...+...++.
T Consensus 410 l~~L~~qWe~~R~pL~~e~r~lk~~~~~~~~e~~~~~~~ik~~r~~~k~~~~e~~~Kee~~~qL~~e~e~~~k~ 483 (594)
T PF05667_consen 410 LVELAQQWEKHRAPLIEEYRRLKEKASNRESESKQKLQEIKELREEIKEIEEEIRQKEELYKQLVKELEKLPKD 483 (594)
T ss_pred HHHHHHHHHHHHhHHHHHHHHHHHHHhhcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCC
Confidence 33344444444445555555555555544443444456677889999999999999999988877777666554
No 81
>KOG0018 consensus Structural maintenance of chromosome protein 1 (sister chromatid cohesion complex Cohesin, subunit SMC1) [Cell cycle control, cell division, chromosome partitioning]
Probab=92.48 E-value=39 Score=42.85 Aligned_cols=140 Identities=22% Similarity=0.310 Sum_probs=80.6
Q ss_pred HHHHHHHHHHHHHHhhhhhhhhHHHHHHHHHHHHHHHhhHHHHHHHHHHhHHHHhhhhhhhhccHHHHhHHHhhHHHHHH
Q 003570 433 AERLQDEFRRLSVDMASKFDENEKLAMKAMTEANEQRMQKAHLEEMLQKANDELSLIKDQNGVKLQELSDQLEQKDKQIQ 512 (810)
Q Consensus 433 aErLQeEf~~LS~qmsSt~eeNEklt~kA~~EaseLR~qk~~LEemLqk~neeL~~i~dq~e~kl~eL~~qld~k~k~ie 512 (810)
|+++++.+..+-.++-+.- .+|.++++.+.|..++-. +. .++.+.....+....+...
T Consensus 809 ve~~~~~v~~~~~~~~~~~-~~e~~~~k~i~e~~~~e~-k~--------------------k~~~~~~~~e~~e~~k~~~ 866 (1141)
T KOG0018|consen 809 VERWERSVEDLEKEIEGLK-KDEEAAEKIIAEIEELEK-KN--------------------KSKFEKKEDEINEVKKILR 866 (1141)
T ss_pred HHHHHHHHHHHHHhHHhhH-HHHHHHHHHHhhHHHHHH-HH--------------------HHHHHHHHHHHHHHHHHHH
Confidence 4555555555555555443 377788888888743332 11 2234444444555555555
Q ss_pred HHHHhhhhchhhhhHHhhhHHHHHHhHHHHHHHHHHHHHHHHHhhhhhhhcccccCCCCCCcccchhhHHHhhhhhhhhh
Q 003570 513 KMYLELDHSSSQLIDEHKSEAQKHEALSTEIHMLRTEIEKLRKEQYNLSEHGKRRDDNKPKVSTGETDMLIQKWNRERDD 592 (810)
Q Consensus 513 ~m~~Ele~kS~qle~~kk~~ee~~~a~s~EI~~Lk~eie~L~~e~~~l~e~~~~~d~e~~k~s~~e~~~~lq~~~~er~e 592 (810)
+|..++. .+..+|..+.+.|+++..|+++|.....-.+...+=.+..=+++.. --..--..
T Consensus 867 ~~~~~~t------------------kl~~~i~~~es~ie~~~~er~~lL~~ckl~~I~vPl~~gs~~d~~~-~ieidy~~ 927 (1141)
T KOG0018|consen 867 RLVKELT------------------KLDKEITSIESKIERKESERHNLLSKCKLEDIEVPLSSGSMDDIVI-GIEIDYSG 927 (1141)
T ss_pred HHHHHHH------------------HHhhhhhhhhhHHHHHHHHHHHHHHHhhhccccccccCCCccccce-eccccccc
Confidence 5544433 3567889999999999999999877774445554433221112221 11122235
Q ss_pred HHHHHHHHHHHHHHHHHHHHhh
Q 003570 593 LEKKFASAKQEAAKAHEELISM 614 (810)
Q Consensus 593 l~~~~a~~kkeae~~~~EL~~m 614 (810)
|-..+- |+.+.+....+|++|
T Consensus 928 L~~~y~-L~~kl~e~~~~l~~~ 948 (1141)
T KOG0018|consen 928 LPREYK-LQQKLEEKQSVLNRI 948 (1141)
T ss_pred ccHHHH-HHHHHHHHHHHHHHh
Confidence 555555 677777777777776
No 82
>PF05483 SCP-1: Synaptonemal complex protein 1 (SCP-1); InterPro: IPR008827 Synaptonemal complex protein 1 (SCP-1) is the major component of the transverse filaments of the synaptonemal complex. Synaptonemal complexes are structures that are formed between homologous chromosomes during meiotic prophase [].; GO: 0007130 synaptonemal complex assembly, 0000795 synaptonemal complex
Probab=92.36 E-value=33 Score=41.76 Aligned_cols=46 Identities=28% Similarity=0.241 Sum_probs=36.6
Q ss_pred hhhhhhHhhHHHHHHHHHHHHHHHHHHhHHHhHhhHhHHHHHHHHH
Q 003570 339 RECIESLATIKELESQSERLEDKIKQQSEEYSESLISINELECQVK 384 (810)
Q Consensus 339 ~EcS~~~~~i~eLe~qve~LE~eLk~q~~efSesL~tI~eLE~qv~ 384 (810)
+||+.--.-+.-|-.++.--|++++...-.|.++-..|+.|+...+
T Consensus 233 ~E~n~kEkqvs~L~~q~~eKen~~kdl~~~l~es~~~~~qLeE~~~ 278 (786)
T PF05483_consen 233 KEVNDKEKQVSLLQTQLKEKENKIKDLLLLLQESQDKCNQLEEKTK 278 (786)
T ss_pred HHhhhHHHHHHHHHHHHHhhHhHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 6777777777778888888888888888888888888888876554
No 83
>PF00261 Tropomyosin: Tropomyosin; InterPro: IPR000533 Tropomyosins [], are a family of closely related proteins present in muscle and non-muscle cells. In striated muscle, tropomyosin mediate the interactions between the troponin complex and actin so as to regulate muscle contraction []. The role of tropomyosin in smooth muscle and non-muscle tissues is not clear. Tropomyosin is an alpha-helical protein that forms a coiled-coil structure of 2 parallel helices containing 2 sets of 7 alternating actin binding sites []. There are multiple cell-specific isoforms, created by differential splicing of the messenger RNA from one gene, but the proportions of the isoforms vary between different cell types. Muscle isoforms of tropomyosin are characterised by having 284 amino acid residues and a highly conserved N-terminal region, whereas non-muscle forms are generally smaller and are heterogeneous in their N-terminal region. This entry represents tropomyosin (Tmp) 1, 2 and 3. Within the yeast Tmp1 and Tmp2, biochemical and sequence analyses indicate that Tpm2 spans four actin monomers along a filament, whereas Tpm1 spans five. Despite its shorter length, Tpm2 can compete with Tpm1 for binding to F-actin. Over-expression of Tpm2 in vivo alters the axial budding of haploids to a bipolar pattern, and this can be partially suppressed by co-over-expression of Tpm1. This suggests distinct functions for the two tropomyosins, and indicates that the ratio between them is important for correct morphogenesis [].; PDB: 2EFR_A 2Z5H_C 2Z5I_D 2D3E_B 2EFS_D 3U59_B 1C1G_C 1IHQ_A 3AZD_B 1MV4_B ....
Probab=92.25 E-value=16 Score=37.90 Aligned_cols=58 Identities=17% Similarity=0.278 Sum_probs=35.4
Q ss_pred HHHHHHHHHHHHHHhhhhhhhhHHHHHHHHHHHHHHHhhHHHHHHHHHHhHHHHhhhhhhhh
Q 003570 433 AERLQDEFRRLSVDMASKFDENEKLAMKAMTEANEQRMQKAHLEEMLQKANDELSLIKDQNG 494 (810)
Q Consensus 433 aErLQeEf~~LS~qmsSt~eeNEklt~kA~~EaseLR~qk~~LEemLqk~neeL~~i~dq~e 494 (810)
.+.+...++.|..+ +.+-|.-+-.|-..+..|-.+...||.-|.........++..-.
T Consensus 171 e~~~e~~i~~L~~~----lkeaE~Rae~aE~~v~~Le~~id~le~eL~~~k~~~~~~~~eld 228 (237)
T PF00261_consen 171 EDEYEEKIRDLEEK----LKEAENRAEFAERRVKKLEKEIDRLEDELEKEKEKYKKVQEELD 228 (237)
T ss_dssp HHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34555555555543 44556666666677777777777777777766666555554433
No 84
>KOG0971 consensus Microtubule-associated protein dynactin DCTN1/Glued [Cell cycle control, cell division, chromosome partitioning; Cytoskeleton]
Probab=92.22 E-value=39 Score=42.35 Aligned_cols=31 Identities=13% Similarity=0.125 Sum_probs=19.1
Q ss_pred HHHhhhhHHHHHhhHHHHHHHHHHHHHHhhH
Q 003570 641 KLQNSLIEEKLEKDNLAKQVFQLKDELQKKK 671 (810)
Q Consensus 641 ~LK~sL~~ee~EKe~l~kQv~qLk~eL~KKe 671 (810)
+-|+-+++...=-.-+-.||-+..-.+...-
T Consensus 567 dyk~~fa~skayaraie~QlrqiEv~~a~rh 597 (1243)
T KOG0971|consen 567 DYKIKFAESKAYARAIEMQLRQIEVAQANRH 597 (1243)
T ss_pred HHHHHHHHhHHHHHHHHHHHHHHHHHHHHHH
Confidence 4566666666666666667777666655443
No 85
>KOG0971 consensus Microtubule-associated protein dynactin DCTN1/Glued [Cell cycle control, cell division, chromosome partitioning; Cytoskeleton]
Probab=92.12 E-value=40 Score=42.26 Aligned_cols=273 Identities=26% Similarity=0.313 Sum_probs=152.3
Q ss_pred HhhHHHHHHHHHHHHHHHHHHhHHHhHhhHhHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHhhhHHHHHHHHHHHHHHHH
Q 003570 345 LATIKELESQSERLEDKIKQQSEEYSESLISINELECQVKELKRELDKQAQEFEDDIDAVTHAKTEQEQRAIRAEEELRK 424 (810)
Q Consensus 345 ~~~i~eLe~qve~LE~eLk~q~~efSesL~tI~eLE~qv~sLeeEl~~Qaq~fe~Dldam~~~k~EQEqRAi~AEeaLrK 424 (810)
..|=.+|..||..|..+|.-.+-.-++-=..+.+|+..-.-++ |.+.|-+ -|+..-...+++.-+|
T Consensus 223 skte~eLr~QvrdLtEkLetlR~kR~EDk~Kl~Elekmkiqle-----qlqEfkS---kim~qqa~Lqrel~ra------ 288 (1243)
T KOG0971|consen 223 SKTEEELRAQVRDLTEKLETLRLKRAEDKAKLKELEKMKIQLE-----QLQEFKS---KIMEQQADLQRELKRA------ 288 (1243)
T ss_pred ccchHHHHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHH-----HHHHHHH---HHHHHHHHHHHHHHHH------
Confidence 3455569999999999998888776666666666665444433 2333332 2222333333333333
Q ss_pred HhhhhhhhHHHHHHHHHHHHHHhhhhhhhhHHHHHHHHHHHHHHHhhHHHHH-HHHHHhHH----HHhhhhhhhhccHHH
Q 003570 425 TRWKNTVTAERLQDEFRRLSVDMASKFDENEKLAMKAMTEANEQRMQKAHLE-EMLQKAND----ELSLIKDQNGVKLQE 499 (810)
Q Consensus 425 tR~~na~taErLQeEf~~LS~qmsSt~eeNEklt~kA~~EaseLR~qk~~LE-emLqk~ne----eL~~i~dq~e~kl~e 499 (810)
-..+..+|+=-.+.-..|+-+.|.=|-+|.+ .|..+=|++-=++| ++++.-++ +|...+..-+-+=.+
T Consensus 289 -----R~e~keaqe~ke~~k~emad~ad~iEmaTld--KEmAEERaesLQ~eve~lkEr~deletdlEILKaEmeekG~~ 361 (1243)
T KOG0971|consen 289 -----RKEAKEAQEAKERYKEEMADTADAIEMATLD--KEMAEERAESLQQEVEALKERVDELETDLEILKAEMEEKGSD 361 (1243)
T ss_pred -----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCC
Confidence 1234455555556667788888888887765 34444444433333 22222222 222322222211111
Q ss_pred HhHHHhhHHHHHHHHHHhhhhchhhhhHHhhhHHHHHHhHHHHHHHHHHHHHHHHHhhhhhhhcccccCCCCCCcccchh
Q 003570 500 LSDQLEQKDKQIQKMYLELDHSSSQLIDEHKSEAQKHEALSTEIHMLRTEIEKLRKEQYNLSEHGKRRDDNKPKVSTGET 579 (810)
Q Consensus 500 L~~qld~k~k~ie~m~~Ele~kS~qle~~kk~~ee~~~a~s~EI~~Lk~eie~L~~e~~~l~e~~~~~d~e~~k~s~~e~ 579 (810)
-.++-.---+|||+--.-|.+.-=.|-+.--++..-+.-+.+|..+++.||+.|..-...|
T Consensus 362 ~~~~ss~qfkqlEqqN~rLKdalVrLRDlsA~ek~d~qK~~kelE~k~sE~~eL~r~kE~L------------------- 422 (1243)
T KOG0971|consen 362 GQAASSYQFKQLEQQNARLKDALVRLRDLSASEKQDHQKLQKELEKKNSELEELRRQKERL------------------- 422 (1243)
T ss_pred CcccchHHHHHHHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHHHhhHHHHHHHHHHHH-------------------
Confidence 1111122334555555555555555555555555666666777777777777666544444
Q ss_pred hHHHhhhhhhhhhHHHHHHHHHHHHHHHH--HHHHh-hhccCchhHHHHhhHHHHHHHHHH---HHHHHHhhhhHHHHHh
Q 003570 580 DMLIQKWNRERDDLEKKFASAKQEAAKAH--EELIS-MRSLKGENEMLIGNLQAEVENLKV---QQNKLQNSLIEEKLEK 653 (810)
Q Consensus 580 ~~~lq~~~~er~el~~~~a~~kkeae~~~--~EL~~-m~~~kdEkE~~i~~LqsE~e~lk~---Q~~~LK~sL~~ee~EK 653 (810)
.++.+.++++|+-+|.++--++ +++-+ +...|=+=|..+..|.-+|+.|.+ =+..|-.| .-++|+
T Consensus 423 -------sr~~d~aEs~iadlkEQVDAAlGAE~MV~qLtdknlnlEekVklLeetv~dlEalee~~EQL~Es--n~ele~ 493 (1243)
T KOG0971|consen 423 -------SRELDQAESTIADLKEQVDAALGAEEMVEQLTDKNLNLEEKVKLLEETVGDLEALEEMNEQLQES--NRELEL 493 (1243)
T ss_pred -------HHHHHHHHHHHHHHHHHHHHhhcHHHHHHHHHhhccCHHHHHHHHHHHHHHHHHHHHHHHHHHHH--HHHHHH
Confidence 4556888999999998865553 45544 566667777888888877766544 33333332 223333
Q ss_pred hHHHHHHHHHHHHH
Q 003570 654 DNLAKQVFQLKDEL 667 (810)
Q Consensus 654 e~l~kQv~qLk~eL 667 (810)
.|++++-+++|..
T Consensus 494 -DLreEld~~~g~~ 506 (1243)
T KOG0971|consen 494 -DLREELDMAKGAR 506 (1243)
T ss_pred -HHHHHHHHHhhHH
Confidence 3788888887765
No 86
>COG1579 Zn-ribbon protein, possibly nucleic acid-binding [General function prediction only]
Probab=91.36 E-value=15 Score=39.30 Aligned_cols=74 Identities=20% Similarity=0.186 Sum_probs=40.8
Q ss_pred hhhhHHHHHHHHHHHHHHHHHHHHhhhccCchhHHHHhhHHHHHHHHHHHHHHHHhhhhHHHHHhhHHHHHHHH
Q 003570 589 ERDDLEKKFASAKQEAAKAHEELISMRSLKGENEMLIGNLQAEVENLKVQQNKLQNSLIEEKLEKDNLAKQVFQ 662 (810)
Q Consensus 589 er~el~~~~a~~kkeae~~~~EL~~m~~~kdEkE~~i~~LqsE~e~lk~Q~~~LK~sL~~ee~EKe~l~kQv~q 662 (810)
+.+.|...+.-++.....+-.||..+..-.-+.+.-|..|+..+..++....+++.++..+-.+...=...+++
T Consensus 90 e~~aL~~E~~~ak~r~~~le~el~~l~~~~~~l~~~i~~l~~~~~~~e~~~~e~~~~~e~e~~~i~e~~~~~~~ 163 (239)
T COG1579 90 ELRALNIEIQIAKERINSLEDELAELMEEIEKLEKEIEDLKERLERLEKNLAEAEARLEEEVAEIREEGQELSS 163 (239)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44444455555555554444555444443344455566666677777777777777776666655553333333
No 87
>KOG0612 consensus Rho-associated, coiled-coil containing protein kinase [Signal transduction mechanisms]
Probab=91.15 E-value=56 Score=42.02 Aligned_cols=154 Identities=19% Similarity=0.194 Sum_probs=78.1
Q ss_pred HHhhhhhhhhHHHHHHHHhhhhh-hhhhhhHhhHHHHHHHHHHHHHHHHHH---hHHHhHhhHhHHHHHHHHHHHHHHHH
Q 003570 316 LEQENQCLTSKLEKIQQQESMKS-RECIESLATIKELESQSERLEDKIKQQ---SEEYSESLISINELECQVKELKRELD 391 (810)
Q Consensus 316 LkqEN~~ls~kLEq~q~Qeql~~-~EcS~~~~~i~eLe~qve~LE~eLk~q---~~efSesL~tI~eLE~qv~sLeeEl~ 391 (810)
|+.+|....+-.|.. +.-.++ ++-...+....++.+-+.++ +|.-+ -.++...|..=...-..+..+--+|+
T Consensus 652 l~r~~~e~~~~~ek~--~~e~~~e~~lk~~q~~~eq~~~E~~~~--~L~~~e~~~~e~~~~lseek~ar~k~e~~~~~i~ 727 (1317)
T KOG0612|consen 652 LKRENQERISDSEKE--ALEIKLERKLKMLQNELEQENAEHHRL--RLQDKEAQMKEIESKLSEEKSAREKAENLLLEIE 727 (1317)
T ss_pred HHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHHHHHHHHHH--HHhhHHHHHHHHHHHhcccccHHHHHHHHHHHHH
Confidence 445555544444443 111233 45555555555555555555 22221 11222222222223334445555666
Q ss_pred HHHHHHHhhHHHHHhhhHHHHHHHHHHHHHHHHHhhhhhhhHH-----HHHHHHHHHHHHhhhhhhhhHHHHHHHHHHHH
Q 003570 392 KQAQEFEDDIDAVTHAKTEQEQRAIRAEEELRKTRWKNTVTAE-----RLQDEFRRLSVDMASKFDENEKLAMKAMTEAN 466 (810)
Q Consensus 392 ~Qaq~fe~Dldam~~~k~EQEqRAi~AEeaLrKtR~~na~taE-----rLQeEf~~LS~qmsSt~eeNEklt~kA~~Eas 466 (810)
.+...+..|.-......-++..++.+....+++. .-++..+ -+|.|++..+..+.+ .-.-.+.-.+-+
T Consensus 728 ~e~e~L~~d~~~~~~~~~~l~r~~~~~~~~vl~L--q~~LEqe~~~r~~~~~eLssq~~~~~t-----~~~Ekq~~~~~~ 800 (1317)
T KOG0612|consen 728 AELEYLSNDYKQSQEKLNELRRSKDQLITEVLKL--QSMLEQEISKRLSLQRELKSQEQEVNT-----KMLEKQLKKLLD 800 (1317)
T ss_pred HHHHHHhhhhhhhccchhhhhhhHHHHHHHHHHH--HHHHHHHHHHhhhhHHHhhhHHHhhcc-----HHHHHHHHHHHH
Confidence 7777788888777755666666665554444332 1222222 257777766777766 223334455566
Q ss_pred HHHhhHHHHHHHHH
Q 003570 467 EQRMQKAHLEEMLQ 480 (810)
Q Consensus 467 eLR~qk~~LEemLq 480 (810)
.|++=++++|+...
T Consensus 801 ~l~~~K~~~e~~~~ 814 (1317)
T KOG0612|consen 801 ELAELKKQLEEENA 814 (1317)
T ss_pred HHHHHHHHHHHHHH
Confidence 66666666765443
No 88
>KOG1029 consensus Endocytic adaptor protein intersectin [Signal transduction mechanisms; Intracellular trafficking, secretion, and vesicular transport]
Probab=91.05 E-value=48 Score=41.06 Aligned_cols=107 Identities=25% Similarity=0.286 Sum_probs=68.8
Q ss_pred hhhHHHHHHHHHHHHHHHHHHHhhhhhhhhHHHHHHHHhhhhhhhhhhhHhhHHHHHHHHHHHHHHHHHHhHHHhHhhHh
Q 003570 296 KKHAEDLEIYIKQLTEDCQVLEQENQCLTSKLEKIQQQESMKSRECIESLATIKELESQSERLEDKIKQQSEEYSESLIS 375 (810)
Q Consensus 296 kkerEeLe~~ieQL~~D~E~LkqEN~~ls~kLEq~q~Qeql~~~EcS~~~~~i~eLe~qve~LE~eLk~q~~efSesL~t 375 (810)
.-++..|...|+++..-+-.|..|-..+-.+|.+.|.-.--.-.--|.+-+....-+.-++++...|.+.++|--..+-.
T Consensus 485 isei~qlqarikE~q~kl~~l~~Ekq~l~~qlkq~q~a~~~~~~~~s~L~aa~~~ke~irq~ikdqldelskE~esk~~e 564 (1118)
T KOG1029|consen 485 ISEIDQLQARIKELQEKLQKLAPEKQELNHQLKQKQSAHKETTQRKSELEAARRKKELIRQAIKDQLDELSKETESKLNE 564 (1118)
T ss_pred HHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHhhhhccCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 34444555555555555555666666666666664422200000112222333333466888999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhHH
Q 003570 376 INELECQVKELKRELDKQAQEFEDDID 402 (810)
Q Consensus 376 I~eLE~qv~sLeeEl~~Qaq~fe~Dld 402 (810)
|+-+-+|++.|..+.++|.-..+.-..
T Consensus 565 idi~n~qlkelk~~~~~q~lake~~yk 591 (1118)
T KOG1029|consen 565 IDIFNNQLKELKEDVNSQQLAKEELYK 591 (1118)
T ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 999999999999999999876654433
No 89
>smart00787 Spc7 Spc7 kinetochore protein. This domain is found in cell division proteins which are required for kinetochore-spindle association.
Probab=90.98 E-value=19 Score=39.44 Aligned_cols=135 Identities=21% Similarity=0.304 Sum_probs=78.8
Q ss_pred HHHHhhhhHHHHHHHHHHHHHHHHHHHhhhhhhhhHHHHHHHHhhhhhhhhhhhHhhHHHHHHHHHHHHHHHHHHhHHHh
Q 003570 291 EIQFFKKHAEDLEIYIKQLTEDCQVLEQENQCLTSKLEKIQQQESMKSRECIESLATIKELESQSERLEDKIKQQSEEYS 370 (810)
Q Consensus 291 Eie~ykkerEeLe~~ieQL~~D~E~LkqEN~~ls~kLEq~q~Qeql~~~EcS~~~~~i~eLe~qve~LE~eLk~q~~efS 370 (810)
.++..+.|...|..+++.+..-+..|+..-..|...+.+-+... =-|+-|.+ +...++-.+|+.+..++.
T Consensus 152 ~~~~l~~D~~~L~~~~~~l~~~~~~l~~~~~~L~~e~~~L~~~~-~e~~~~d~---------~eL~~lk~~l~~~~~ei~ 221 (312)
T smart00787 152 NLEGLKEDYKLLMKELELLNSIKPKLRDRKDALEEELRQLKQLE-DELEDCDP---------TELDRAKEKLKKLLQEIM 221 (312)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhH-HHHHhCCH---------HHHHHHHHHHHHHHHHHH
Confidence 44444456666666666666656555554444444444411110 01122221 122223334444433333
Q ss_pred HhhHhHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHhhhHHHHHHHHHHHHHHHHHhhhhhhhHHHHHHHHHHHHHH
Q 003570 371 ESLISINELECQVKELKRELDKQAQEFEDDIDAVTHAKTEQEQRAIRAEEELRKTRWKNTVTAERLQDEFRRLSVD 446 (810)
Q Consensus 371 esL~tI~eLE~qv~sLeeEl~~Qaq~fe~Dldam~~~k~EQEqRAi~AEeaLrKtR~~na~taErLQeEf~~LS~q 446 (810)
.....+.. ++.|.+....+|++.+..+.+.......|+--+...|.=....+.+|...|..|...
T Consensus 222 ~~~~~l~e-----------~~~~l~~l~~~I~~~~~~k~e~~~~I~~ae~~~~~~r~~t~~Ei~~Lk~~~~~Le~l 286 (312)
T smart00787 222 IKVKKLEE-----------LEEELQELESKIEDLTNKKSELNTEIAEAEKKLEQCRGFTFKEIEKLKEQLKLLQSL 286 (312)
T ss_pred HHHHHHHH-----------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHH
Confidence 33333333 344445667777888888888888888898889999998999999999999888654
No 90
>PF12718 Tropomyosin_1: Tropomyosin like; InterPro: IPR000533 Tropomyosins [], are a family of closely related proteins present in muscle and non-muscle cells. In striated muscle, tropomyosin mediate the interactions between the troponin complex and actin so as to regulate muscle contraction []. The role of tropomyosin in smooth muscle and non-muscle tissues is not clear. Tropomyosin is an alpha-helical protein that forms a coiled-coil structure of 2 parallel helices containing 2 sets of 7 alternating actin binding sites []. There are multiple cell-specific isoforms, created by differential splicing of the messenger RNA from one gene, but the proportions of the isoforms vary between different cell types. Muscle isoforms of tropomyosin are characterised by having 284 amino acid residues and a highly conserved N-terminal region, whereas non-muscle forms are generally smaller and are heterogeneous in their N-terminal region. This entry represents tropomyosin (Tmp) 1, 2 and 3. Within the yeast Tmp1 and Tmp2, biochemical and sequence analyses indicate that Tpm2 spans four actin monomers along a filament, whereas Tpm1 spans five. Despite its shorter length, Tpm2 can compete with Tpm1 for binding to F-actin. Over-expression of Tpm2 in vivo alters the axial budding of haploids to a bipolar pattern, and this can be partially suppressed by co-over-expression of Tpm1. This suggests distinct functions for the two tropomyosins, and indicates that the ratio between them is important for correct morphogenesis [].
Probab=90.85 E-value=16 Score=35.81 Aligned_cols=114 Identities=25% Similarity=0.342 Sum_probs=59.7
Q ss_pred HHHHHHHHHhhhHHHHhhhhHHHHHHHHHHHHHHHHHHHhhhhhhhhHHHHHHHHhhhhh-hhhhhhHhhHHHHHHHHHH
Q 003570 279 DMLKQKIRDQGDEIQFFKKHAEDLEIYIKQLTEDCQVLEQENQCLTSKLEKIQQQESMKS-RECIESLATIKELESQSER 357 (810)
Q Consensus 279 ~~LkqKI~DL~~Eie~ykkerEeLe~~ieQL~~D~E~LkqEN~~ls~kLEq~q~Qeql~~-~EcS~~~~~i~eLe~qve~ 357 (810)
..++.++-++..+....-.+...|..++.+|+.+.+.+...=..+...++.+.-.- . .| ++..-|.-|+..++.
T Consensus 17 e~~e~~~K~le~~~~~~E~EI~sL~~K~~~lE~eld~~~~~l~~~k~~lee~~~~~---~~~E--~l~rriq~LEeele~ 91 (143)
T PF12718_consen 17 EELEAKVKQLEQENEQKEQEITSLQKKNQQLEEELDKLEEQLKEAKEKLEESEKRK---SNAE--QLNRRIQLLEEELEE 91 (143)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHH---HhHH--HHHhhHHHHHHHHHH
Confidence 34455555554444433345555556666666665555553334444555433211 1 12 344445555666666
Q ss_pred HHHHHHHHhHHHhHhhHhHHHHHHHHHHHHHHHHHHHHHH
Q 003570 358 LEDKIKQQSEEYSESLISINELECQVKELKRELDKQAQEF 397 (810)
Q Consensus 358 LE~eLk~q~~efSesL~tI~eLE~qv~sLeeEl~~Qaq~f 397 (810)
.+..|+.-...+-+.-.....++.+|..|+.+...=..+|
T Consensus 92 ae~~L~e~~ekl~e~d~~ae~~eRkv~~le~~~~~~E~k~ 131 (143)
T PF12718_consen 92 AEKKLKETTEKLREADVKAEHFERKVKALEQERDQWEEKY 131 (143)
T ss_pred HHHHHHHHHHHHHHHHHHhHHHHHHHHHHHhhHHHHHHHH
Confidence 6666666666666666666666666666666555444444
No 91
>KOG0946 consensus ER-Golgi vesicle-tethering protein p115 [Intracellular trafficking, secretion, and vesicular transport]
Probab=90.65 E-value=53 Score=40.82 Aligned_cols=45 Identities=22% Similarity=0.251 Sum_probs=32.3
Q ss_pred hhhchhhhhHHhhhHHHHHHhHHHHHHHHHHHHHHHHHhhhhhhh
Q 003570 518 LDHSSSQLIDEHKSEAQKHEALSTEIHMLRTEIEKLRKEQYNLSE 562 (810)
Q Consensus 518 le~kS~qle~~kk~~ee~~~a~s~EI~~Lk~eie~L~~e~~~l~e 562 (810)
...-.+-+.+..++-+....++..+|+-....|..++..+.+|-.
T Consensus 839 m~~~~~~la~e~~~ieq~ls~l~~~~k~~~nli~~ltEk~~sl~~ 883 (970)
T KOG0946|consen 839 MGSTEKNLANELKLIEQKLSNLQEKIKFGNNLIKELTEKISSLEA 883 (970)
T ss_pred hhccccchhhHHHHHHHHHHHHHHHhhhhhhHHHHHhhhhhhHHH
Confidence 344455556666777777788888888888888888877777743
No 92
>PF08614 ATG16: Autophagy protein 16 (ATG16); InterPro: IPR013923 Macroautophagy is a bulk degradation process induced by starvation in eukaryotic cells. In yeast, 15 Apg proteins coordinate the formation of autophagosomes. No molecule involved in autophagy has yet been identified in higher eukaryotes []. The pre-autophagosomal structure contains at least five Apg proteins: Apg1p, Apg2p, Apg5p, Aut7p/Apg8p and Apg16p. It is found in the vacuole []. The C-terminal glycine of Apg12p is conjugated to a lysine residue of Apg5p via an isopeptide bond. During autophagy, cytoplasmic components are enclosed in autophagosomes and delivered to lysosomes/vacuoles. Auotphagy protein 16 (Apg16) has been shown to be bind to Apg5 and is required for the function of the Apg12p-Apg5p conjugate []. Autophagy protein 5 (Apg5) is directly required for the import of aminopeptidase I via the cytoplasm-to-vacuole targeting pathway []. This entry represents auotphagy protein 16 (Apg16), which is required for the function of the Apg12p-Apg5p conjugate.; PDB: 3A7O_D 3A7P_B.
Probab=89.94 E-value=2.6 Score=42.35 Aligned_cols=96 Identities=19% Similarity=0.201 Sum_probs=0.0
Q ss_pred hhhhhhHHHHHHHHHHHHHHHHhhhhhhhhhhhhhhhhhhhhhHHHHHHHHhhccCchhhHHHHHHHHHhhhHHHHhhhh
Q 003570 219 KTQDSNAELILAVKDLNEMLEQKNMEISSLSSKLEESKLVREDQLALEALAKERNKDKEVDMLKQKIRDQGDEIQFFKKH 298 (810)
Q Consensus 219 KTQESNsELilAVqDLeeMLEqKn~EIs~ls~~~~e~~~~~edq~ale~Lvke~~~~~E~~~LkqKI~DL~~Eie~ykke 298 (810)
+.+..|.+||.|..-|=+.+.-...+...|............... -.........+..+.+++..+..|+...++.
T Consensus 14 ~~e~~~~~li~ay~~L~d~~~~l~~~~~~l~~~~~~~~~~~~~~~----~~~~~~~~~~~~~le~~~~~l~~ELael~r~ 89 (194)
T PF08614_consen 14 RREKAFAELIDAYNRLADRTSLLKAENEQLQPEAESLPSSSSSSP----SESGSVSSAQISSLEQKLAKLQEELAELYRS 89 (194)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred ccccccccccccccccccccccccccccccccccccccccccccc----ccccccccccccccccccccccccccccccc
Confidence 345788899999988877776666666554431111111000000 0111222345677888888888888888888
Q ss_pred HHHHHHHHHHHHHHHHHHHh
Q 003570 299 AEDLEIYIKQLTEDCQVLEQ 318 (810)
Q Consensus 299 rEeLe~~ieQL~~D~E~Lkq 318 (810)
+..+..++-.++...+.|..
T Consensus 90 ~~el~~~L~~~~~~l~~l~~ 109 (194)
T PF08614_consen 90 KGELAQQLVELNDELQELEK 109 (194)
T ss_dssp --------------------
T ss_pred cccccccccccccccchhhh
Confidence 88888888877776666655
No 93
>PF09730 BicD: Microtubule-associated protein Bicaudal-D; InterPro: IPR018477 BicD proteins consist of three coiled-coiled domains and are involved in dynein-mediated minus end-directed transport from the Golgi apparatus to the endoplasmic reticulum (ER) []. Glycogen synthase kinase-3beta (GSK-3beta) is required for the binding of BICD to dynein but not to dynactin, acting to maintain the anchoring of microtubules to the centromere []. It appears that amino-acid residues 437-617 of BicD and the kinase activity of GSK-3 are necessary for the formation of a complex between BicD and GSK-3beta in intact cells [].; GO: 0006810 transport, 0005794 Golgi apparatus
Probab=89.82 E-value=57 Score=39.91 Aligned_cols=145 Identities=18% Similarity=0.236 Sum_probs=103.8
Q ss_pred HHHHHHHHHHHHHhHHHhHhhHhHHHHHHHHHHHHHHHHHH---HHHHHhhHHHHHhhhHHHHHHHHHHHHHHHHHhhhh
Q 003570 353 SQSERLEDKIKQQSEEYSESLISINELECQVKELKRELDKQ---AQEFEDDIDAVTHAKTEQEQRAIRAEEELRKTRWKN 429 (810)
Q Consensus 353 ~qve~LE~eLk~q~~efSesL~tI~eLE~qv~sLeeEl~~Q---aq~fe~Dldam~~~k~EQEqRAi~AEeaLrKtR~~n 429 (810)
+.|+.|+++|..-..+-+.-+.++.+++.++..-..++..| +-++.+.+++|.+-+...++-.. .....+.+
T Consensus 265 ~EiqKL~qQL~qve~EK~~L~~~L~e~Q~qLe~a~~als~q~eki~~L~e~l~aL~~l~~~ke~~~~-----~d~~~~~~ 339 (717)
T PF09730_consen 265 SEIQKLKQQLLQVEREKSSLLSNLQESQKQLEHAQGALSEQQEKINRLTEQLDALRKLQEDKEQQSA-----EDSEKERD 339 (717)
T ss_pred HHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhccchhhhhh-----hhcccccc
Confidence 78899999999999999999999999999999999888866 78888999999986655555332 22222322
Q ss_pred hhhHHHHHHHHHHHHHHhhhhhhhhHHHHHHHHHHHHHHHhhHHHHHHHHHHhHHHHhhhhhhhhccHHHHhHHHhhHHH
Q 003570 430 TVTAERLQDEFRRLSVDMASKFDENEKLAMKAMTEANEQRMQKAHLEEMLQKANDELSLIKDQNGVKLQELSDQLEQKDK 509 (810)
Q Consensus 430 a~taErLQeEf~~LS~qmsSt~eeNEklt~kA~~EaseLR~qk~~LEemLqk~neeL~~i~dq~e~kl~eL~~qld~k~k 509 (810)
+..- .....+...+ ++--|.-...|++|+..|+.....|-..+..+..--..-++.++..++.|..++..-.+
T Consensus 340 s~~d------~~~ye~Di~~-~eiLe~Ky~vav~Ev~~Lk~ELk~Lk~k~~~~~~~~~~ek~~~~~e~q~L~ekl~~lek 412 (717)
T PF09730_consen 340 SHED------GDYYEVDING-LEILECKYKVAVSEVIQLKAELKALKSKYNELEERYKQEKDRLESEVQNLKEKLMSLEK 412 (717)
T ss_pred cccc------cchhhhcccc-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 2211 1111111111 22235566688899999988888888888777776666777788888888888877655
No 94
>PF15070 GOLGA2L5: Putative golgin subfamily A member 2-like protein 5
Probab=89.78 E-value=52 Score=39.42 Aligned_cols=220 Identities=22% Similarity=0.255 Sum_probs=111.9
Q ss_pred chHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHhhhhhhHHHHHHhhHHhhhHHHHHHHHhhhhhh-hhHHHHhhhhhh
Q 003570 110 GSVEKLKNEIAVMMRQVELSELELLSLRKQVAKESKRAQDQTRQIISLSSERDALTIECEQLRKQNS-IDIAEIERRLQS 188 (810)
Q Consensus 110 ~~iEkLKsE~~~l~Rq~e~selELQtLRKQi~KESKRgqdLsrEv~~lk~ERD~Lk~EcEqLksqk~-~~ea~~~~~lq~ 188 (810)
.-.+.|+.|.+.|.......--++.+|++.--.-..|.+.|-+.|..|+.. ......... -.-..+.-+|+.
T Consensus 15 ~ya~~lk~e~a~~qqr~~qmseev~~L~eEk~~~~~~V~eLE~sL~eLk~q-------~~~~~~~~~pa~pse~E~~Lq~ 87 (617)
T PF15070_consen 15 QYAQQLKEESAQWQQRMQQMSEEVRTLKEEKEHDISRVQELERSLSELKNQ-------MAEPPPPEPPAGPSEVEQQLQA 87 (617)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh-------hcccCCccccccchHHHHHHHH
Confidence 356889999999999988888899999999999889999888887664432 111111000 000011111211
Q ss_pred hhhhHHHHHHHHHHhhhhhhcchhhhhhhhhhhhhhHHHHHHHHHHHHHHHHhhhhhhhhhhhhhhhhhhhhhH-HHHHH
Q 003570 189 EEHLKFLQEEIREELNYEKEVSAHLRLQLEKTQDSNAELILAVKDLNEMLEQKNMEISSLSSKLEESKLVREDQ-LALEA 267 (810)
Q Consensus 189 e~D~~~llEElr~EL~yEKelNaNL~LQLqKTQESNsELilAVqDLeeMLEqKn~EIs~ls~~~~e~~~~~edq-~ale~ 267 (810)
-++.|+.|+ -+|.=||+---.-|..|-..+++.++-|-.....+..+. +...|. ..|+.
T Consensus 88 ------E~~~L~kEl-------E~L~~qlqaqv~~ne~Ls~L~~EqEerL~ELE~~le~~~-------e~~~D~~kLLe~ 147 (617)
T PF15070_consen 88 ------EAEHLRKEL-------ESLEEQLQAQVENNEQLSRLNQEQEERLAELEEELERLQ-------EQQEDRQKLLEQ 147 (617)
T ss_pred ------HHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHhh
Confidence 122233332 234444443222333333333344433333322222211 111111 11111
Q ss_pred HHhhccCchhhHHHHHHHHHhhhHHHHhhhhHHHHHHHHHHHHHHHHHHHhhhhhhhhHHHHHHHHhhhhh-hhhhhhHh
Q 003570 268 LAKERNKDKEVDMLKQKIRDQGDEIQFFKKHAEDLEIYIKQLTEDCQVLEQENQCLTSKLEKIQQQESMKS-RECIESLA 346 (810)
Q Consensus 268 Lvke~~~~~E~~~LkqKI~DL~~Eie~ykkerEeLe~~ieQL~~D~E~LkqEN~~ls~kLEq~q~Qeql~~-~EcS~~~~ 346 (810)
+- +.+.. |--.-..+-+|..++.+|..-+-.|..+|.++.++|-.-+-.. -.+ -.|.....
T Consensus 148 lq--sdk~t---------------~SRAlsQN~eLK~QL~Elq~~Fv~ltne~~elt~~lq~Eq~~~-keL~~kl~~l~~ 209 (617)
T PF15070_consen 148 LQ--SDKAT---------------ASRALSQNRELKEQLAELQDAFVKLTNENMELTSALQSEQHVK-KELQKKLGELQE 209 (617)
T ss_pred hc--ccchH---------------HHHHHHhHHHHHHHHHHHHHHHHHHHHhhhHhhHHHHHHHHHH-HHHHHHHHHHHH
Confidence 11 11110 1111257789999999999999999999999888876533211 011 33344444
Q ss_pred hHHHHHHHHHHHHHHHHHHhHHHhHhhH
Q 003570 347 TIKELESQSERLEDKIKQQSEEYSESLI 374 (810)
Q Consensus 347 ~i~eLe~qve~LE~eLk~q~~efSesL~ 374 (810)
.+..++.+|+.-..++......+..|+.
T Consensus 210 ~l~~~~e~le~K~qE~~~Lq~q~dq~~~ 237 (617)
T PF15070_consen 210 KLHNLKEKLELKSQEAQSLQEQRDQYLG 237 (617)
T ss_pred HHHHHHHHHHhhhHHHHHHHHHHHHHHH
Confidence 4555555555555555555444444443
No 95
>PF09726 Macoilin: Transmembrane protein; InterPro: IPR019130 This entry represents the multi-pass transmembrane protein Macoilin, which is highly conserved in eukaryotes. ; GO: 0016021 integral to membrane
Probab=89.57 E-value=57 Score=39.60 Aligned_cols=41 Identities=20% Similarity=0.327 Sum_probs=32.7
Q ss_pred hHHHHHHHHHhhhHHHHhhhhHHHHHHHHHHHHHHHHHHHh
Q 003570 278 VDMLKQKIRDQGDEIQFFKKHAEDLEIYIKQLTEDCQVLEQ 318 (810)
Q Consensus 278 ~~~LkqKI~DL~~Eie~ykkerEeLe~~ieQL~~D~E~Lkq 318 (810)
...++++..+|-.||...+.+.-..+.++..|+.+...|+.
T Consensus 540 ~e~~r~r~~~lE~E~~~lr~elk~kee~~~~~e~~~~~lr~ 580 (697)
T PF09726_consen 540 AESCRQRRRQLESELKKLRRELKQKEEQIRELESELQELRK 580 (697)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34678999999989988888888888888888887776665
No 96
>KOG0978 consensus E3 ubiquitin ligase involved in syntaxin degradation [Posttranslational modification, protein turnover, chaperones]
Probab=89.22 E-value=62 Score=39.51 Aligned_cols=54 Identities=24% Similarity=0.331 Sum_probs=42.0
Q ss_pred HHhhHHHHHHHHHHHHHHHHhhhhHHHHHhhHHHHHHHHHHHHHHhhHHHHHhh
Q 003570 624 LIGNLQAEVENLKVQQNKLQNSLIEEKLEKDNLAKQVFQLKDELQKKKEEINRT 677 (810)
Q Consensus 624 ~i~~LqsE~e~lk~Q~~~LK~sL~~ee~EKe~l~kQv~qLk~eL~KKe~~~~~~ 677 (810)
-+.-||++++..-+++-+++..+.+-..|.+.++++.++|..|+.+-...+..+
T Consensus 567 ~~~~Lq~~~ek~~~~le~i~~~~~e~~~ele~~~~k~~rleEE~e~L~~kle~~ 620 (698)
T KOG0978|consen 567 SLEDLQIELEKSEAKLEQIQEQYAELELELEIEKFKRKRLEEELERLKRKLERL 620 (698)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 345567777777777888888888888888999999999999888776666544
No 97
>PF06818 Fez1: Fez1; InterPro: IPR009638 This family represents the eukaryotic Fez1 protein. Fez1 contains a leucine-zipper region with similarity to the DNA-binding domain of the cAMP-responsive activating-transcription factor 5 []. There is evidence that Fez1 inhibits cancer cell growth through regulation of mitosis, and that its alterations result in abnormal cell growth []. Note that some family members contain more than one copy of this region.; GO: 0005737 cytoplasm, 0016020 membrane
Probab=89.06 E-value=18 Score=38.04 Aligned_cols=132 Identities=25% Similarity=0.320 Sum_probs=65.7
Q ss_pred HhhhhhhhhhhhhhhhhhhhhhHHHHHHHHhhccCchhhHHHHHHHHHhhhHHHHhhhhHHHHHHHHHHHHHHHHHHHhh
Q 003570 240 QKNMEISSLSSKLEESKLVREDQLALEALAKERNKDKEVDMLKQKIRDQGDEIQFFKKHAEDLEIYIKQLTEDCQVLEQE 319 (810)
Q Consensus 240 qKn~EIs~ls~~~~e~~~~~edq~ale~Lvke~~~~~E~~~LkqKI~DL~~Eie~ykkerEeLe~~ieQL~~D~E~LkqE 319 (810)
||+.|||-|-..+++.. ..-+.++.||-.|+..+.++.+.+...-...-.|......-+.+.++..
T Consensus 7 qk~GEIsLLKqQLke~q------------~E~~~K~~Eiv~Lr~ql~e~~~~l~~~~~~~~~l~~~~~~K~~ELE~ce-- 72 (202)
T PF06818_consen 7 QKSGEISLLKQQLKESQ------------AEVNQKDSEIVSLRAQLRELRAELRNKESQIQELQDSLRTKQLELEVCE-- 72 (202)
T ss_pred hhhhhHHHHHHHHHHHH------------HHHHHHHhHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHhhHhHHHhH--
Confidence 66777776655555433 1122334566677776666665555433333333322222222222221
Q ss_pred hhhhhhHHHHHHHHhhhhhhhhhhhHhhHHHHHHHHHHHHHHHHHHhHHHhHh-----------------------hHhH
Q 003570 320 NQCLTSKLEKIQQQESMKSRECIESLATIKELESQSERLEDKIKQQSEEYSES-----------------------LISI 376 (810)
Q Consensus 320 N~~ls~kLEq~q~Qeql~~~EcS~~~~~i~eLe~qve~LE~eLk~q~~efSes-----------------------L~tI 376 (810)
+|......-+.-|...|..|+.++...+..++.+ -.++
T Consensus 73 -------------------~ELqr~~~Ea~lLrekl~~le~El~~Lr~~l~~~~~~~~~~~~l~~~deak~~~~~~~~~~ 133 (202)
T PF06818_consen 73 -------------------NELQRKKNEAELLREKLGQLEAELAELREELACAGRLKRQCQLLSESDEAKAQRQAGEDEL 133 (202)
T ss_pred -------------------HHHHHHhCHHHHhhhhhhhhHHHHHHHHHHHHhhccchhhhccccccchhHHhhccccccc
Confidence 1222222333445556666666666666666654 1245
Q ss_pred HHHHHHHHHHHHHHH-------HHHHHHHhhHHHH
Q 003570 377 NELECQVKELKRELD-------KQAQEFEDDIDAV 404 (810)
Q Consensus 377 ~eLE~qv~sLeeEl~-------~Qaq~fe~Dldam 404 (810)
..|..+|..|..+|. .|+..|+.+..+-
T Consensus 134 ~~l~~e~erL~aeL~~er~~~e~q~~~Fe~ER~~W 168 (202)
T PF06818_consen 134 GSLRREVERLRAELQRERQRREEQRSSFEQERRTW 168 (202)
T ss_pred hhHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHH
Confidence 556666666666655 5666666655443
No 98
>KOG0946 consensus ER-Golgi vesicle-tethering protein p115 [Intracellular trafficking, secretion, and vesicular transport]
Probab=88.82 E-value=72 Score=39.75 Aligned_cols=64 Identities=17% Similarity=0.197 Sum_probs=44.4
Q ss_pred HHHHHhhhhhhhHHHHHHHHHHHHHHhhhhhhhhHHHHHHHHHHHHHHHhhHHHHHHHHHHhHHHHhhhhh
Q 003570 421 ELRKTRWKNTVTAERLQDEFRRLSVDMASKFDENEKLAMKAMTEANEQRMQKAHLEEMLQKANDELSLIKD 491 (810)
Q Consensus 421 aLrKtR~~na~taErLQeEf~~LS~qmsSt~eeNEklt~kA~~EaseLR~qk~~LEemLqk~neeL~~i~d 491 (810)
.+-|+++.++.+-.+ + ..|-+-++..+.+-.-.|..|...|-.+.-.+.+.|.|-++-+.+.+.
T Consensus 709 ~~Lk~qLg~~~~~~~---~----~~q~~e~~~t~~eel~a~~~e~k~l~~~q~~l~~~L~k~~~~~es~k~ 772 (970)
T KOG0946|consen 709 DLLKNQLGIISSKQR---D----LLQGAEASKTQNEELNAALSENKKLENDQELLTKELNKKNADIESFKA 772 (970)
T ss_pred HHHHHHhcccccchh---h----HHhHHHhccCChHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHH
Confidence 455666665554321 1 122334666777778889999999998999999999888887777554
No 99
>PRK04863 mukB cell division protein MukB; Provisional
Probab=88.81 E-value=92 Score=40.98 Aligned_cols=53 Identities=15% Similarity=0.295 Sum_probs=39.7
Q ss_pred HHHHHHHHHhhhhchhhhhHHhhhHHHHHHhHHHHHHHHHHHHHHHHHhhhhh
Q 003570 508 DKQIQKMYLELDHSSSQLIDEHKSEAQKHEALSTEIHMLRTEIEKLRKEQYNL 560 (810)
Q Consensus 508 ~k~ie~m~~Ele~kS~qle~~kk~~ee~~~a~s~EI~~Lk~eie~L~~e~~~l 560 (810)
...+++...+.+..-..+..++..-.+....+.++.+.|..+|..|..---.|
T Consensus 553 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~qL~~~i~~l~~~ap~W 605 (1486)
T PRK04863 553 EDELEQLQEELEARLESLSESVSEARERRMALRQQLEQLQARIQRLAARAPAW 605 (1486)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhChHH
Confidence 34566666666666667777777778888888899999999998887655555
No 100
>TIGR01005 eps_transp_fam exopolysaccharide transport protein family. The model describes the exopolysaccharide transport protein family in bacteria. The transport protein is part of a large genetic locus which is associated with exopolysaccharide (EPS) biosynthesis. Detailed molecular characterization and gene fusion analysis revealed atleast seven gene products are involved in the overall regulation, which among other things, include exopolysaccharide biosynthesis, property of conferring virulence and exopolysaccharide export.
Probab=88.78 E-value=47 Score=39.49 Aligned_cols=51 Identities=14% Similarity=0.210 Sum_probs=44.1
Q ss_pred hhHHHHHHHHHHHHHHHHHHhHHHhHhhHhHHHHHHHHHHHHHHHHHHHHH
Q 003570 346 ATIKELESQSERLEDKIKQQSEEYSESLISINELECQVKELKRELDKQAQE 396 (810)
Q Consensus 346 ~~i~eLe~qve~LE~eLk~q~~efSesL~tI~eLE~qv~sLeeEl~~Qaq~ 396 (810)
+.|.+|..+...++.++...+..|.+.--.|-.+.+++..|+..+.....+
T Consensus 288 ~~i~~L~~~l~~l~~~~~~l~~~y~~~hP~v~~l~~qi~~l~~~i~~e~~~ 338 (754)
T TIGR01005 288 DLIQRLRERQAELRATIADLSTTMLANHPRVVAAKSSLADLDAQIRSELQK 338 (754)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHHHHHHHHHHH
Confidence 678999999999999999999999999999999999999998887654443
No 101
>PF09755 DUF2046: Uncharacterized conserved protein H4 (DUF2046); InterPro: IPR019152 This is the conserved N-terminal 350 residues of a family of proteins of unknown function possibly containing a coiled-coil domain.
Probab=88.67 E-value=45 Score=37.16 Aligned_cols=31 Identities=19% Similarity=0.285 Sum_probs=23.5
Q ss_pred CcchHHHHHHHHHHHHhhhhhhHHHHHHHHH
Q 003570 108 SDGSVEKLKNEIAVMMRQVELSELELLSLRK 138 (810)
Q Consensus 108 sd~~iEkLKsE~~~l~Rq~e~selELQtLRK 138 (810)
|+.+-+.|+.-+..|.+.-.+...+|.++|-
T Consensus 18 S~~t~~~l~~~~~sL~qen~~Lk~El~~ek~ 48 (310)
T PF09755_consen 18 SSATREQLRKRIESLQQENRVLKRELETEKA 48 (310)
T ss_pred CCCchHHHHHHHHHHHHHhHHHHHHHHHHHH
Confidence 4455588999999999888887777776553
No 102
>PF09730 BicD: Microtubule-associated protein Bicaudal-D; InterPro: IPR018477 BicD proteins consist of three coiled-coiled domains and are involved in dynein-mediated minus end-directed transport from the Golgi apparatus to the endoplasmic reticulum (ER) []. Glycogen synthase kinase-3beta (GSK-3beta) is required for the binding of BICD to dynein but not to dynactin, acting to maintain the anchoring of microtubules to the centromere []. It appears that amino-acid residues 437-617 of BicD and the kinase activity of GSK-3 are necessary for the formation of a complex between BicD and GSK-3beta in intact cells [].; GO: 0006810 transport, 0005794 Golgi apparatus
Probab=88.52 E-value=69 Score=39.20 Aligned_cols=99 Identities=19% Similarity=0.288 Sum_probs=68.2
Q ss_pred HHHHHhHHHHHHHHHHHHHHHHHhhhhhhhcccccCCCCCCcccchhhHHHhhhhhhhhhHHHHHHHHHH-------HHH
Q 003570 533 AQKHEALSTEIHMLRTEIEKLRKEQYNLSEHGKRRDDNKPKVSTGETDMLIQKWNRERDDLEKKFASAKQ-------EAA 605 (810)
Q Consensus 533 ee~~~a~s~EI~~Lk~eie~L~~e~~~l~e~~~~~d~e~~k~s~~e~~~~lq~~~~er~el~~~~a~~kk-------eae 605 (810)
+-++...-.|+..|+.++..|+.+.+.+-.. ..-....|..+...|..++..+.+ ...
T Consensus 358 e~Ky~vav~Ev~~Lk~ELk~Lk~k~~~~~~~---------------~~~ek~~~~~e~q~L~ekl~~lek~~re~qeri~ 422 (717)
T PF09730_consen 358 ECKYKVAVSEVIQLKAELKALKSKYNELEER---------------YKQEKDRLESEVQNLKEKLMSLEKSSREDQERIS 422 (717)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---------------HHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHH
Confidence 3566677788888888888887766665221 222335667777778888887777 555
Q ss_pred HHHHHHHhhhccCchhHHHHhhHHHHHHHHHHHHHHHHhhh
Q 003570 606 KAHEELISMRSLKGENEMLIGNLQAEVENLKVQQNKLQNSL 646 (810)
Q Consensus 606 ~~~~EL~~m~~~kdEkE~~i~~LqsE~e~lk~Q~~~LK~sL 646 (810)
....+|..++..-+|....|+..|.++-++......|=|-+
T Consensus 423 ~LE~ELr~l~~~A~E~q~~LnsAQDELvtfSEeLAqLYHHV 463 (717)
T PF09730_consen 423 ELEKELRALSKLAGESQGSLNSAQDELVTFSEELAQLYHHV 463 (717)
T ss_pred HHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 56667777777777777777777777777777776666644
No 103
>PRK04778 septation ring formation regulator EzrA; Provisional
Probab=88.26 E-value=58 Score=38.02 Aligned_cols=114 Identities=18% Similarity=0.302 Sum_probs=55.6
Q ss_pred HHHHHHHhHHHhHhhHhHHHHHH-HHHHHHHHHHHHHHHHHhhHHHHHhhhHHHHHHHHHHHHHHHHHhhhhhhhHHHHH
Q 003570 359 EDKIKQQSEEYSESLISINELEC-QVKELKRELDKQAQEFEDDIDAVTHAKTEQEQRAIRAEEELRKTRWKNTVTAERLQ 437 (810)
Q Consensus 359 E~eLk~q~~efSesL~tI~eLE~-qv~sLeeEl~~Qaq~fe~Dldam~~~k~EQEqRAi~AEeaLrKtR~~na~taErLQ 437 (810)
+.++...+....+++..|..|+- .+..--..+..++..+-+.++.-..|+..-++..-.....|..++-+|. .|.
T Consensus 255 ~~~i~~l~~~i~~~~~~l~~l~l~~~~~~~~~i~~~Id~Lyd~lekE~~A~~~vek~~~~l~~~l~~~~e~~~----~l~ 330 (569)
T PRK04778 255 EKEIQDLKEQIDENLALLEELDLDEAEEKNEEIQERIDQLYDILEREVKARKYVEKNSDTLPDFLEHAKEQNK----ELK 330 (569)
T ss_pred HHHHHHHHHHHHHHHHHHHhcChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHH----HHH
Confidence 45555566666666666555532 1222333334444444444444444555555555556667777766554 455
Q ss_pred HHHHHHHHHhhhhhhhhHHHHHHHHH-HHHHHHhhHHHHHHH
Q 003570 438 DEFRRLSVDMASKFDENEKLAMKAMT-EANEQRMQKAHLEEM 478 (810)
Q Consensus 438 eEf~~LS~qmsSt~eeNEklt~kA~~-EaseLR~qk~~LEem 478 (810)
.|+.+|+..- ++.++|--...++. +...+..+...++..
T Consensus 331 ~Ei~~l~~sY--~l~~~e~~~~~~lekeL~~Le~~~~~~~~~ 370 (569)
T PRK04778 331 EEIDRVKQSY--TLNESELESVRQLEKQLESLEKQYDEITER 370 (569)
T ss_pred HHHHHHHHcc--ccCchhHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 5666664432 33345444433332 244444444433333
No 104
>PF15619 Lebercilin: Ciliary protein causing Leber congenital amaurosis disease
Probab=86.77 E-value=41 Score=34.70 Aligned_cols=135 Identities=24% Similarity=0.322 Sum_probs=78.9
Q ss_pred hHHHHHHhhHHhhhHHHHHHHHhhh-hhhhhHHHHhhhhhh-hhhhHHHHHHHHHHhhhhhhcchhhhhhhhhhhhhhHH
Q 003570 149 DQTRQIISLSSERDALTIECEQLRK-QNSIDIAEIERRLQS-EEHLKFLQEEIREELNYEKEVSAHLRLQLEKTQDSNAE 226 (810)
Q Consensus 149 dLsrEv~~lk~ERD~Lk~EcEqLks-qk~~~ea~~~~~lq~-e~D~~~llEElr~EL~yEKelNaNL~LQLqKTQESNsE 226 (810)
.|--+|..++.+=+.++.|..-||. +.+ ..++.+++-. +++...++-=...|+. +|+-+|.++|+.+-+
T Consensus 16 ~L~n~l~elq~~l~~l~~ENk~Lk~lq~R--q~kAL~k~e~~e~~Lpqll~~h~eEvr-------~Lr~~LR~~q~~~r~ 86 (194)
T PF15619_consen 16 ELQNELAELQRKLQELRKENKTLKQLQKR--QEKALQKYEDTEAELPQLLQRHNEEVR-------VLRERLRKSQEQERE 86 (194)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH--HHHHHHHHHhhhhhHHHHHHHHHHHHH-------HHHHHHHHHHHHHHH
Confidence 4444555555555555555555555 332 2222333322 2255555555555553 688899999999887
Q ss_pred HHHHHHHHHHHHHHhhhhhhhhhhhhhhhhhhhhhHHHHHHHHhhccCchhhHHHHHHHHHhhhHHHHhhhhHHHHHHHH
Q 003570 227 LILAVKDLNEMLEQKNMEISSLSSKLEESKLVREDQLALEALAKERNKDKEVDMLKQKIRDQGDEIQFFKKHAEDLEIYI 306 (810)
Q Consensus 227 LilAVqDLeeMLEqKn~EIs~ls~~~~e~~~~~edq~ale~Lvke~~~~~E~~~LkqKI~DL~~Eie~ykkerEeLe~~i 306 (810)
+---++|.++-|..-+.++.. |..|++...=+ +...|..++.++...++...+....|+.++
T Consensus 87 ~~~klk~~~~el~k~~~~l~~-----------------L~~L~~dknL~-eReeL~~kL~~~~~~l~~~~~ki~~Lek~l 148 (194)
T PF15619_consen 87 LERKLKDKDEELLKTKDELKH-----------------LKKLSEDKNLA-EREELQRKLSQLEQKLQEKEKKIQELEKQL 148 (194)
T ss_pred HHHHHHHHHHHHHHHHHHHHH-----------------HHHHHHcCCch-hHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 777777777666655555544 34455544332 456777788887777776666666666655
Q ss_pred HHHH
Q 003570 307 KQLT 310 (810)
Q Consensus 307 eQL~ 310 (810)
+-..
T Consensus 149 eL~~ 152 (194)
T PF15619_consen 149 ELEN 152 (194)
T ss_pred HHHh
Confidence 4433
No 105
>PF14662 CCDC155: Coiled-coil region of CCDC155
Probab=86.55 E-value=45 Score=34.96 Aligned_cols=166 Identities=27% Similarity=0.341 Sum_probs=97.7
Q ss_pred HHHHHHHHHHHHHHHHHhhhhhhhhHHHHHHHHhhhhhhhhhhhHhh-HHHHHHHHHHHHHHH---HHHhHHHhHhhHhH
Q 003570 301 DLEIYIKQLTEDCQVLEQENQCLTSKLEKIQQQESMKSRECIESLAT-IKELESQSERLEDKI---KQQSEEYSESLISI 376 (810)
Q Consensus 301 eLe~~ieQL~~D~E~LkqEN~~ls~kLEq~q~Qeql~~~EcS~~~~~-i~eLe~qve~LE~eL---k~q~~efSesL~tI 376 (810)
+|-..|+-|+.-+.-|..+|..+...++- |.+.++-+.. |.+|..+...+-+=+ |-...++-+.=..+
T Consensus 5 dL~~~v~dL~~~n~~L~~en~kL~~~ve~--------~ee~na~L~~e~~~L~~q~~s~Qqal~~aK~l~eEledLk~~~ 76 (193)
T PF14662_consen 5 DLLSCVEDLQLNNQKLADENAKLQRSVET--------AEEGNAQLAEEITDLRKQLKSLQQALQKAKALEEELEDLKTLA 76 (193)
T ss_pred HHHHHHHHHHHHhHHHHHHHHHHHHHHHH--------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 56677777888888888888877776665 4444444443 666776666552211 22233333333345
Q ss_pred HHHHHHHHHHH---HHHHHHHHHHHhhHHHHHhhhHHHHHHHHHHH-HHHHHHhhhhhhhHHHHHH---HHHHHHHHhhh
Q 003570 377 NELECQVKELK---RELDKQAQEFEDDIDAVTHAKTEQEQRAIRAE-EELRKTRWKNTVTAERLQD---EFRRLSVDMAS 449 (810)
Q Consensus 377 ~eLE~qv~sLe---eEl~~Qaq~fe~Dldam~~~k~EQEqRAi~AE-eaLrKtR~~na~taErLQe---Ef~~LS~qmsS 449 (810)
+.||.+-.+|. +.+++..|.|.+.++++.-.+..- .++ +-|.+-...=+.....||. +|..|..++-+
T Consensus 77 ~~lEE~~~~L~aq~rqlEkE~q~L~~~i~~Lqeen~kl-----~~e~~~lk~~~~eL~~~~~~Lq~Ql~~~e~l~~~~da 151 (193)
T PF14662_consen 77 KSLEEENRSLLAQARQLEKEQQSLVAEIETLQEENGKL-----LAERDGLKKRSKELATEKATLQRQLCEFESLICQRDA 151 (193)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHH-----HHhhhhHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHH
Confidence 56666666654 467788888888888887666532 222 2233322222223333433 77888888888
Q ss_pred hhhhhHHHHHHHH---HH----HHHHHhhHHHHHHHH
Q 003570 450 KFDENEKLAMKAM---TE----ANEQRMQKAHLEEML 479 (810)
Q Consensus 450 t~eeNEklt~kA~---~E----aseLR~qk~~LEemL 479 (810)
-..++-+-+-... .| ..+||..+..||+-|
T Consensus 152 ~l~e~t~~i~eL~~~ieEy~~~teeLR~e~s~LEeql 188 (193)
T PF14662_consen 152 ILSERTQQIEELKKTIEEYRSITEELRLEKSRLEEQL 188 (193)
T ss_pred HHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 8887777654433 33 346777777777665
No 106
>TIGR03017 EpsF chain length determinant protein EpsF. Sequences in this family of proteins are members of the chain length determinant family (pfam02706) which includes the wzc protein from E.coli. This family of proteins are homologous to the EpsF protein of the methanolan biosynthesis operon of Methylobacillus species strain 12S. The distribution of this protein appears to be restricted to a subset of exopolysaccharide operons containing a syntenic grouping of genes including a variant of the EpsH exosortase protein. Exosortase has been proposed to be involved in the targetting and processing of proteins containing the PEP-CTERM domain to the exopolysaccharide layer.
Probab=86.52 E-value=56 Score=36.00 Aligned_cols=58 Identities=16% Similarity=0.304 Sum_probs=51.0
Q ss_pred HhhHHHHHHHHHHHHHHHHHHhHHHhHhhHhHHHHHHHHHHHHHHHHHHHHHHHhhHH
Q 003570 345 LATIKELESQSERLEDKIKQQSEEYSESLISINELECQVKELKRELDKQAQEFEDDID 402 (810)
Q Consensus 345 ~~~i~eLe~qve~LE~eLk~q~~efSesL~tI~eLE~qv~sLeeEl~~Qaq~fe~Dld 402 (810)
-+.|..|.+++..++.+|...+..|.+---.|-.+.+++..+...+.....+...-+.
T Consensus 253 ~~~i~~l~~~l~~le~~l~~l~~~y~~~hP~v~~l~~~i~~l~~~l~~e~~~~~~~~~ 310 (444)
T TIGR03017 253 NPIIQNLKTDIARAESKLAELSQRLGPNHPQYKRAQAEINSLKSQLNAEIKKVTSSVG 310 (444)
T ss_pred ChHHHHHHHHHHHHHHHHHHHHHHhCCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3568899999999999999999999999999999999999999999887776655443
No 107
>PF04012 PspA_IM30: PspA/IM30 family; InterPro: IPR007157 This family includes PspA a protein that suppresses sigma54-dependent transcription. The PspA protein, a negative regulator of the Escherichia coli phage shock psp operon, is produced when virulence factors are exported through secretins in many Gram-negative pathogenic bacteria and its homologue in plants, VIPP1, plays a critical role in thylakoid biogenesis, essential for photosynthesis. Activation of transcription by the enhancer-dependent bacterial sigma54-containing RNA polymerase occurs through ATP hydrolysis-driven protein conformational changes enabled by activator proteins that belong to the large AAA(+) mechanochemical protein family. It has been shown that PspA directly and specifically acts upon and binds to the AAA(+) domain of the PspF transcription activator [].
Probab=86.46 E-value=33 Score=34.72 Aligned_cols=140 Identities=20% Similarity=0.328 Sum_probs=82.8
Q ss_pred hhhhhhhhhhHHHHHHHHHHHHHHHHhhhhhhhhhhhhhhhhhhhhhHHHHHHHHhhccCchhhHHHHHHHHHhhhHHHH
Q 003570 215 LQLEKTQDSNAELILAVKDLNEMLEQKNMEISSLSSKLEESKLVREDQLALEALAKERNKDKEVDMLKQKIRDQGDEIQF 294 (810)
Q Consensus 215 LQLqKTQESNsELilAVqDLeeMLEqKn~EIs~ls~~~~e~~~~~edq~ale~Lvke~~~~~E~~~LkqKI~DL~~Eie~ 294 (810)
-+|.+...+=+..+-...-|+--+.+...+|..+.......-..+.+.+|-..|.....-...+..|++-+..+...++.
T Consensus 37 ~~l~~a~~~~a~~~a~~~~le~~~~~~~~~~~~~~~~A~~Al~~g~edLAr~al~~k~~~e~~~~~l~~~~~~~~~~~~~ 116 (221)
T PF04012_consen 37 EQLRKARQALARVMANQKRLERKLDEAEEEAEKWEKQAELALAAGREDLAREALQRKADLEEQAERLEQQLDQAEAQVEK 116 (221)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34556666666666666777777777777777766655544445566677777776665555556666555555555555
Q ss_pred hhhhHHHHHHHHHHHHHHHHHHHhhhhhhhhHHHHHHHHhhhhhhh------hhhhHhhHHHHHHHHHHHHHHHH
Q 003570 295 FKKHAEDLEIYIKQLTEDCQVLEQENQCLTSKLEKIQQQESMKSRE------CIESLATIKELESQSERLEDKIK 363 (810)
Q Consensus 295 ykkerEeLe~~ieQL~~D~E~LkqEN~~ls~kLEq~q~Qeql~~~E------cS~~~~~i~eLe~qve~LE~eLk 363 (810)
.+.....|+.+|.++......| ..+..-.+.|. .|.+ -++...+++.++..|..+|.+-.
T Consensus 117 l~~~l~~l~~kl~e~k~k~~~l-------~ar~~~a~a~~--~~~~~~~~~~~~~a~~~~er~e~ki~~~ea~a~ 182 (221)
T PF04012_consen 117 LKEQLEELEAKLEELKSKREEL-------KARENAAKAQK--KVNEALASFSVSSAMDSFERMEEKIEEMEARAE 182 (221)
T ss_pred HHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHH--HHHHHhccCCccchHHHHHHHHHHHHHHHHHHH
Confidence 4555555555555555444444 44666666665 4433 34445566666666666666553
No 108
>PF07926 TPR_MLP1_2: TPR/MLP1/MLP2-like protein; InterPro: IPR012929 This domain is found in a number of proteins, including TPR protein (P12270 from SWISSPROT) and yeast myosin-like proteins 1 (MLP1, Q02455 from SWISSPROT) and 2 (MLP2, P40457 from SWISSPROT). These proteins share a number of features; for example, they all have coiled-coil regions and all three are associated with nuclear pores [, , ]. TPR is thought to be a component of nuclear pore complex- attached intranuclear filaments [], and is implicated in nuclear protein import []. Moreover, its N-terminal region is involved in the activation of oncogenic kinases, possibly by mediating the dimerisation of kinase domains or by targeting these kinases to the nuclear pore complex []. MLP1 and MLP2 are involved in the process of telomere length regulation, where they are thought to interact with proteins such as Tel1p and modulate their activity []. ; GO: 0006606 protein import into nucleus, 0005643 nuclear pore
Probab=86.26 E-value=32 Score=32.90 Aligned_cols=92 Identities=21% Similarity=0.293 Sum_probs=41.1
Q ss_pred HHHHhhhHHHHhhhhHHHHHHHHHHHHHHHHHHHhhhhhhhhHHHHHHHHhhhhhhhhhhhHhhHHHHHHHHHHHHHHHH
Q 003570 284 KIRDQGDEIQFFKKHAEDLEIYIKQLTEDCQVLEQENQCLTSKLEKIQQQESMKSRECIESLATIKELESQSERLEDKIK 363 (810)
Q Consensus 284 KI~DL~~Eie~ykkerEeLe~~ieQL~~D~E~LkqEN~~ls~kLEq~q~Qeql~~~EcS~~~~~i~eLe~qve~LE~eLk 363 (810)
+|..+-.++..++...+....++..+..|.......=...+.+.+. -+--|+.....|..|+.++..+..++.
T Consensus 4 e~~~l~~e~~~~~~~~~~~~~~~~~~~~dl~~q~~~a~~Aq~~YE~-------El~~Ha~~~~~L~~lr~e~~~~~~~~~ 76 (132)
T PF07926_consen 4 ELSSLQSELQRLKEQEEDAEEQLQSLREDLESQAKIAQEAQQKYER-------ELVKHAEDIKELQQLREELQELQQEIN 76 (132)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-------HHHHhHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444444444444555555555555555555444422222222222 122355555555555555555555554
Q ss_pred HHhHHHhHhhHhHHHHHHH
Q 003570 364 QQSEEYSESLISINELECQ 382 (810)
Q Consensus 364 ~q~~efSesL~tI~eLE~q 382 (810)
....+....-..+...+..
T Consensus 77 ~l~~~~~~a~~~l~~~e~s 95 (132)
T PF07926_consen 77 ELKAEAESAKAELEESEAS 95 (132)
T ss_pred HHHHHHHHHHHHHHHHHHh
Confidence 4444433333333333333
No 109
>PF09787 Golgin_A5: Golgin subfamily A member 5; InterPro: IPR019177 This entry represents a family of proteins involved in maintaining Golgi structure. They stimulate the formation of Golgi stacks and ribbons, and are involved in intra-Golgi retrograde transport. Two main interactions have been characterised: one with RAB1A that has been activated by GTP-binding and another with isoform CASP of CUTL1 [].
Probab=85.84 E-value=75 Score=36.78 Aligned_cols=89 Identities=16% Similarity=0.106 Sum_probs=49.1
Q ss_pred hhhHHHHHHHHHHHHHHhhhhhhhhHHHHHHHHHHHHHHHhhHHHHHHHHHHhHHHHhhhhhhhhccHHHHhHHHhhHHH
Q 003570 430 TVTAERLQDEFRRLSVDMASKFDENEKLAMKAMTEANEQRMQKAHLEEMLQKANDELSLIKDQNGVKLQELSDQLEQKDK 509 (810)
Q Consensus 430 a~taErLQeEf~~LS~qmsSt~eeNEklt~kA~~EaseLR~qk~~LEemLqk~neeL~~i~dq~e~kl~eL~~qld~k~k 509 (810)
-..+..++.||..+-..+...-..----+..-..|...||.+... ++ .. +-..+++..+..|..-|=.|..
T Consensus 336 e~e~~l~~~el~~~~ee~~~~~s~~~~k~~~ke~E~q~lr~~l~~------~~--~~-s~~~elE~rl~~lt~~Li~KQ~ 406 (511)
T PF09787_consen 336 EAELRLYYQELYHYREELSRQKSPLQLKLKEKESEIQKLRNQLSA------RA--SS-SSWNELESRLTQLTESLIQKQT 406 (511)
T ss_pred HHHHHHHHHHHHHHHHHHHHhcChHHHHHHHHHHHHHHHHHHHHH------Hh--cc-CCcHhHHHHHhhccHHHHHHHH
Confidence 344556666666666666555554444444555666666655433 11 01 1123466667777666667777
Q ss_pred HHHHHHHhhhhchhhhhH
Q 003570 510 QIQKMYLELDHSSSQLID 527 (810)
Q Consensus 510 ~ie~m~~Ele~kS~qle~ 527 (810)
++|.+.-|=-...=||+.
T Consensus 407 ~lE~l~~ek~al~lqlEr 424 (511)
T PF09787_consen 407 QLESLGSEKNALRLQLER 424 (511)
T ss_pred HHHHHHhhhhhccccHHH
Confidence 777766554444444443
No 110
>PF12325 TMF_TATA_bd: TATA element modulatory factor 1 TATA binding; InterPro: IPR022091 This is the C-terminal conserved coiled coil region of a family of TATA element modulatory factor 1 proteins conserved in eukaryotes []. The proteins bind to the TATA element of some RNA polymerase II promoters and repress their activity. by competing with the binding of TATA binding protein. TMF1_TATA_bd is the most conserved part of the TMFs []. TMFs are evolutionarily conserved golgins that bind Rab6, a ubiquitous ras-like GTP-binding Golgi protein, and contribute to Golgi organisation in animal [] and plant cells. The Rab6-binding domain appears to be the same region as this C-terminal family [].
Probab=85.79 E-value=33 Score=33.19 Aligned_cols=104 Identities=24% Similarity=0.312 Sum_probs=62.4
Q ss_pred chhhHHHHHHHHHhhhHHHHhhhhHHHHHHHHHHHHHHHHHHHhhhhhhhhHHHHHHHHhhhhhhhhhhhHhhHHHHHHH
Q 003570 275 DKEVDMLKQKIRDQGDEIQFFKKHAEDLEIYIKQLTEDCQVLEQENQCLTSKLEKIQQQESMKSRECIESLATIKELESQ 354 (810)
Q Consensus 275 ~~E~~~LkqKI~DL~~Eie~ykkerEeLe~~ieQL~~D~E~LkqEN~~ls~kLEq~q~Qeql~~~EcS~~~~~i~eLe~q 354 (810)
..-+..|...|..+-+|+..++.+...|...=+++..+.=.|..+|-.+.... ..+..|+.+
T Consensus 15 ~~~ve~L~s~lr~~E~E~~~l~~el~~l~~~r~~l~~Eiv~l~~~~e~~~~~~------------------~~~~~L~~e 76 (120)
T PF12325_consen 15 VQLVERLQSQLRRLEGELASLQEELARLEAERDELREEIVKLMEENEELRALK------------------KEVEELEQE 76 (120)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH------------------HHHHHHHHH
Confidence 34566777777777888887777777777776666666555555444332221 223444444
Q ss_pred HHHHHHHHHHHhHHHhHhhHhHHHHHHHHHHHHHHHHHHHHH
Q 003570 355 SERLEDKIKQQSEEYSESLISINELECQVKELKRELDKQAQE 396 (810)
Q Consensus 355 ve~LE~eLk~q~~efSesL~tI~eLE~qv~sLeeEl~~Qaq~ 396 (810)
+..|+.+....=.=|-+---.|.+|++.|..|..=...|++.
T Consensus 77 l~~l~~ry~t~LellGEK~E~veEL~~Dv~DlK~myr~Qi~~ 118 (120)
T PF12325_consen 77 LEELQQRYQTLLELLGEKSEEVEELRADVQDLKEMYREQIDQ 118 (120)
T ss_pred HHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 444444444444444444456777777777777766666654
No 111
>PF05911 DUF869: Plant protein of unknown function (DUF869); InterPro: IPR008587 This family consists of a number of sequences found in plants. The function of this family is unknown.
Probab=85.25 E-value=31 Score=42.30 Aligned_cols=29 Identities=31% Similarity=0.371 Sum_probs=24.4
Q ss_pred HHHHHHHhHHHhHhhHhHHHHHHHHHHHH
Q 003570 359 EDKIKQQSEEYSESLISINELECQVKELK 387 (810)
Q Consensus 359 E~eLk~q~~efSesL~tI~eLE~qv~sLe 387 (810)
+-+|-.-...|.+|=.||-.|-.|+++|.
T Consensus 732 e~EiaaAA~KLAECQeTI~sLGkQLksLa 760 (769)
T PF05911_consen 732 EKEIAAAAEKLAECQETIASLGKQLKSLA 760 (769)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhcC
Confidence 56777888889999999999998888874
No 112
>PF02183 HALZ: Homeobox associated leucine zipper; InterPro: IPR003106 This region is a plant specific leucine zipper that is always found associated with a homeobox []. ; GO: 0003677 DNA binding, 0006355 regulation of transcription, DNA-dependent, 0005634 nucleus
Probab=84.62 E-value=2.7 Score=34.31 Aligned_cols=43 Identities=30% Similarity=0.404 Sum_probs=34.8
Q ss_pred HHHHHHHHHHHHHHHHhhhhHHHHHhhHHHHHHHHHHHHHHhh
Q 003570 628 LQAEVENLKVQQNKLQNSLIEEKLEKDNLAKQVFQLKDELQKK 670 (810)
Q Consensus 628 LqsE~e~lk~Q~~~LK~sL~~ee~EKe~l~kQv~qLk~eL~KK 670 (810)
|--+-+.||.+|+.|+.-...=..|++.|+.+|..|++.+..|
T Consensus 3 lE~Dy~~LK~~yd~Lk~~~~~L~~E~~~L~aev~~L~~kl~~k 45 (45)
T PF02183_consen 3 LERDYDALKASYDSLKAEYDSLKKENEKLRAEVQELKEKLQMK 45 (45)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCC
Confidence 3445677888888888877777789999999999999988654
No 113
>PF12718 Tropomyosin_1: Tropomyosin like; InterPro: IPR000533 Tropomyosins [], are a family of closely related proteins present in muscle and non-muscle cells. In striated muscle, tropomyosin mediate the interactions between the troponin complex and actin so as to regulate muscle contraction []. The role of tropomyosin in smooth muscle and non-muscle tissues is not clear. Tropomyosin is an alpha-helical protein that forms a coiled-coil structure of 2 parallel helices containing 2 sets of 7 alternating actin binding sites []. There are multiple cell-specific isoforms, created by differential splicing of the messenger RNA from one gene, but the proportions of the isoforms vary between different cell types. Muscle isoforms of tropomyosin are characterised by having 284 amino acid residues and a highly conserved N-terminal region, whereas non-muscle forms are generally smaller and are heterogeneous in their N-terminal region. This entry represents tropomyosin (Tmp) 1, 2 and 3. Within the yeast Tmp1 and Tmp2, biochemical and sequence analyses indicate that Tpm2 spans four actin monomers along a filament, whereas Tpm1 spans five. Despite its shorter length, Tpm2 can compete with Tpm1 for binding to F-actin. Over-expression of Tpm2 in vivo alters the axial budding of haploids to a bipolar pattern, and this can be partially suppressed by co-over-expression of Tpm1. This suggests distinct functions for the two tropomyosins, and indicates that the ratio between them is important for correct morphogenesis [].
Probab=83.89 E-value=46 Score=32.71 Aligned_cols=82 Identities=28% Similarity=0.389 Sum_probs=43.0
Q ss_pred HHHHhhhhHHHHHHHHHHHHHHHHHHHhhhhhhhhHHHHHHHHhhhhhhhhhhhHhhHHHHHHHHHHHHHHHHHHhHHHh
Q 003570 291 EIQFFKKHAEDLEIYIKQLTEDCQVLEQENQCLTSKLEKIQQQESMKSRECIESLATIKELESQSERLEDKIKQQSEEYS 370 (810)
Q Consensus 291 Eie~ykkerEeLe~~ieQL~~D~E~LkqEN~~ls~kLEq~q~Qeql~~~EcS~~~~~i~eLe~qve~LE~eLk~q~~efS 370 (810)
|.+......+.++.++.+|+.++..+-++ -.++..-+..|+.+|..++..|.....-+.
T Consensus 8 E~d~a~~r~e~~e~~~K~le~~~~~~E~E---------------------I~sL~~K~~~lE~eld~~~~~l~~~k~~le 66 (143)
T PF12718_consen 8 EADNAQDRAEELEAKVKQLEQENEQKEQE---------------------ITSLQKKNQQLEEELDKLEEQLKEAKEKLE 66 (143)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHH---------------------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44444445555666666665554444332 233334455566677777766666555444
Q ss_pred HhhHh---HHHHHHHHHHHHHHHHHH
Q 003570 371 ESLIS---INELECQVKELKRELDKQ 393 (810)
Q Consensus 371 esL~t---I~eLE~qv~sLeeEl~~Q 393 (810)
++-.. ...|...|..|++++..=
T Consensus 67 e~~~~~~~~E~l~rriq~LEeele~a 92 (143)
T PF12718_consen 67 ESEKRKSNAEQLNRRIQLLEEELEEA 92 (143)
T ss_pred hHHHHHHhHHHHHhhHHHHHHHHHHH
Confidence 44332 334555565555555543
No 114
>PF09738 DUF2051: Double stranded RNA binding protein (DUF2051); InterPro: IPR019139 This entry represents transcriptional repressors which preferentially bind to the GC-rich consensus sequence (5'-AGCCCCCGGCG-3') and may regulate expression of TNF, EGFR and PDGFA. They may control smooth muscle cell proliferation following artery injury through PDGFA repression and may also bind double-stranded RNA. They interact with the leucine-rich repeat domain of human flightless-I (FliI) protein.
Probab=83.86 E-value=13 Score=40.77 Aligned_cols=84 Identities=23% Similarity=0.331 Sum_probs=57.8
Q ss_pred HHHHHHhhHHHHHHHHHHh---HHHHhhhhhhhhccHHHHhHHHhhHHHHHHHHHHhhhhchhhhhHHhhhHHHHHHhHH
Q 003570 464 EANEQRMQKAHLEEMLQKA---NDELSLIKDQNGVKLQELSDQLEQKDKQIQKMYLELDHSSSQLIDEHKSEAQKHEALS 540 (810)
Q Consensus 464 EaseLR~qk~~LEemLqk~---neeL~~i~dq~e~kl~eL~~qld~k~k~ie~m~~Ele~kS~qle~~kk~~ee~~~a~s 540 (810)
-..+||...+-+|+...|| |.+|---+..+--++.-|...|.-+...+-+.--++.+|..+|+.+|+ .+..+.
T Consensus 78 s~r~lk~~l~evEekyrkAMv~naQLDNek~~l~yqvd~Lkd~lee~eE~~~~~~re~~eK~~elEr~K~----~~d~L~ 153 (302)
T PF09738_consen 78 SLRDLKDSLAEVEEKYRKAMVSNAQLDNEKSALMYQVDLLKDKLEELEETLAQLQREYREKIRELERQKR----AHDSLR 153 (302)
T ss_pred cHHHHHHHHHHHHHHHHHHHHHHhhhchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHH
Confidence 4568899999999999987 455544444444445556666666667777777777778887766554 455667
Q ss_pred HHHHHHHHHHH
Q 003570 541 TEIHMLRTEIE 551 (810)
Q Consensus 541 ~EI~~Lk~eie 551 (810)
.|+..|+.+|.
T Consensus 154 ~e~~~Lre~L~ 164 (302)
T PF09738_consen 154 EELDELREQLK 164 (302)
T ss_pred HHHHHHHHHHH
Confidence 77777777774
No 115
>PF12795 MscS_porin: Mechanosensitive ion channel porin domain
Probab=83.65 E-value=58 Score=33.72 Aligned_cols=147 Identities=20% Similarity=0.260 Sum_probs=84.6
Q ss_pred HHHHHHHhhHHHHHhhhHHHHHHHHHHHHHHHHHhhhhhhhHHHHHHHHHHHHHHhhhhhhhhHHHHHHHHHHHHHHHhh
Q 003570 392 KQAQEFEDDIDAVTHAKTEQEQRAIRAEEELRKTRWKNTVTAERLQDEFRRLSVDMASKFDENEKLAMKAMTEANEQRMQ 471 (810)
Q Consensus 392 ~Qaq~fe~Dldam~~~k~EQEqRAi~AEeaLrKtR~~na~taErLQeEf~~LS~qmsSt~eeNEklt~kA~~EaseLR~q 471 (810)
.++..|..+++.......++.+.+..| ......+++++..+.......+..-.++....+ --.
T Consensus 24 ~~al~~L~~~~~~~~~~~~~~~~i~~a-----------P~~~~~l~~~l~~l~~~~~~~~~~~~~~s~~eL------eq~ 86 (240)
T PF12795_consen 24 QQALSFLDEIKKQKKRAAEYQKQIDQA-----------PKEIRELQKELEALKSQDAPSKEILANLSLEEL------EQR 86 (240)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHh-----------HHHHHHHHHHHHhhhccccccccCcccCCHHHH------HHH
Confidence 355667777776666666666666655 445566778888885554455555555544433 222
Q ss_pred HHHHHHHHHHhHHHHhhhhhhhhccHHHHhHHHhhHHHHHHHHHHhhhhchhhhhHH-----hhhHHHHHHhHHHHHHHH
Q 003570 472 KAHLEEMLQKANDELSLIKDQNGVKLQELSDQLEQKDKQIQKMYLELDHSSSQLIDE-----HKSEAQKHEALSTEIHML 546 (810)
Q Consensus 472 k~~LEemLqk~neeL~~i~dq~e~kl~eL~~qld~k~k~ie~m~~Ele~kS~qle~~-----kk~~ee~~~a~s~EI~~L 546 (810)
......-|..+...|.. +.+++-.+.+..+.-...|-.....+..-...|... ..........+..|+..|
T Consensus 87 l~~~~~~L~~~q~~l~~----~~~~l~~~~~~p~~aq~~l~~~~~~l~ei~~~L~~~~~~~~~~l~~a~~~~l~ae~~~l 162 (240)
T PF12795_consen 87 LSQEQAQLQELQEQLQQ----ENSQLIEIQTRPERAQQQLSEARQRLQEIRNQLQNLPPNGESPLSEAQRWLLQAELAAL 162 (240)
T ss_pred HHHHHHHHHHHHHHHHH----HHHHHHHHHccHHHHHHHHHHHHHHHHHHHHHHhccCCCCcchhhHHHHHHHHHHHHHH
Confidence 22223333333333333 334444445555555555555555555555555554 445577778888888888
Q ss_pred HHHHHHHHHhhhh
Q 003570 547 RTEIEKLRKEQYN 559 (810)
Q Consensus 547 k~eie~L~~e~~~ 559 (810)
.++|..|..+...
T Consensus 163 ~~~~~~le~el~s 175 (240)
T PF12795_consen 163 EAQIEMLEQELLS 175 (240)
T ss_pred HHHHHHHHHHHHC
Confidence 8888877765544
No 116
>PF09755 DUF2046: Uncharacterized conserved protein H4 (DUF2046); InterPro: IPR019152 This is the conserved N-terminal 350 residues of a family of proteins of unknown function possibly containing a coiled-coil domain.
Probab=83.63 E-value=80 Score=35.27 Aligned_cols=211 Identities=21% Similarity=0.348 Sum_probs=118.0
Q ss_pred HHHHHHHHHhhhHHHHhhhhHHHHHHHHHHHHHHHHHHHhhhhhhhhHHHHHHHHhhhhhhhhhhhHhhHHHHHHHHHHH
Q 003570 279 DMLKQKIRDQGDEIQFFKKHAEDLEIYIKQLTEDCQVLEQENQCLTSKLEKIQQQESMKSRECIESLATIKELESQSERL 358 (810)
Q Consensus 279 ~~LkqKI~DL~~Eie~ykkerEeLe~~ieQL~~D~E~LkqEN~~ls~kLEq~q~Qeql~~~EcS~~~~~i~eLe~qve~L 358 (810)
..|..+|..|-.+....+.+.+........|..+...|++++..|+.+.|+-+-
T Consensus 23 ~~l~~~~~sL~qen~~Lk~El~~ek~~~~~L~~e~~~lr~~sv~~~~~aEqEEE-------------------------- 76 (310)
T PF09755_consen 23 EQLRKRIESLQQENRVLKRELETEKARCKHLQEENRALREASVRIQAKAEQEEE-------------------------- 76 (310)
T ss_pred HHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--------------------------
Confidence 667788888877777777888888888888888999999999999988888210
Q ss_pred HHHHHHHhHHHhHhhHhHHHHHHHHHHHHHHHHHHHH----HHHhhHHHHHhhhHHHHHHHHHHHHHHHHHhhhhhhhHH
Q 003570 359 EDKIKQQSEEYSESLISINELECQVKELKRELDKQAQ----EFEDDIDAVTHAKTEQEQRAIRAEEELRKTRWKNTVTAE 434 (810)
Q Consensus 359 E~eLk~q~~efSesL~tI~eLE~qv~sLeeEl~~Qaq----~fe~Dldam~~~k~EQEqRAi~AEeaLrKtR~~na~taE 434 (810)
-| ....++.|..|......|-..++.-.. .+..-|.-|..+|++-|....+-.+. -|.
T Consensus 77 --~i------sN~LlKkl~~l~keKe~L~~~~e~EEE~ltn~L~rkl~qLr~EK~~lE~~Le~EqE~----------~V~ 138 (310)
T PF09755_consen 77 --FI------SNTLLKKLQQLKKEKETLALKYEQEEEFLTNDLSRKLNQLRQEKVELENQLEQEQEY----------LVN 138 (310)
T ss_pred --HH------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHH----------HHH
Confidence 01 011233444444444444333332222 23334455666666666555444333 256
Q ss_pred HHHHHHHHHHHHhhhhhhhhHHHHHHHHHHHHHHHhhHHHHHHHHHHhHHHHhhhhhhhhccHHHHhHHHhhHHHHHHHH
Q 003570 435 RLQDEFRRLSVDMASKFDENEKLAMKAMTEANEQRMQKAHLEEMLQKANDELSLIKDQNGVKLQELSDQLEQKDKQIQKM 514 (810)
Q Consensus 435 rLQeEf~~LS~qmsSt~eeNEklt~kA~~EaseLR~qk~~LEemLqk~neeL~~i~dq~e~kl~eL~~qld~k~k~ie~m 514 (810)
+|+.-+..|..++.+.. .+...||..|.-||--|..-.+-| ++-|-.++|.....-..|
T Consensus 139 kL~k~i~~Le~e~~~~q-----------~~le~Lr~EKVdlEn~LE~EQE~l----------vN~L~Kqm~~l~~eKr~L 197 (310)
T PF09755_consen 139 KLQKKIERLEKEKSAKQ-----------EELERLRREKVDLENTLEQEQEAL----------VNRLWKQMDKLEAEKRRL 197 (310)
T ss_pred HHHHHHHHHHHHHHHhH-----------HHHHHHHHHHHhHHHHHHHHHHHH----------HHHHHHHHHHHHHHHHHH
Confidence 77777777754443333 344578888888887776553322 444555555544444444
Q ss_pred HHhhhhchhhhhHHh-----hhHHHHHHhHHHHHHHHHHHHHHHH
Q 003570 515 YLELDHSSSQLIDEH-----KSEAQKHEALSTEIHMLRTEIEKLR 554 (810)
Q Consensus 515 ~~Ele~kS~qle~~k-----k~~ee~~~a~s~EI~~Lk~eie~L~ 554 (810)
-..|+......-... .....-...++.-|..|+.++.+|+
T Consensus 198 q~~l~~~~s~~~s~~d~~~~~~~~Dt~e~~~shI~~Lr~EV~RLR 242 (310)
T PF09755_consen 198 QEKLEQPVSAPPSPRDTVNVSEENDTAERLSSHIRSLRQEVSRLR 242 (310)
T ss_pred HHHHccccCCCCCcchHHhhcccCCchhHHHHHHHHHHHHHHHHH
Confidence 444442111110000 0111122345566666666666655
No 117
>PF12325 TMF_TATA_bd: TATA element modulatory factor 1 TATA binding; InterPro: IPR022091 This is the C-terminal conserved coiled coil region of a family of TATA element modulatory factor 1 proteins conserved in eukaryotes []. The proteins bind to the TATA element of some RNA polymerase II promoters and repress their activity. by competing with the binding of TATA binding protein. TMF1_TATA_bd is the most conserved part of the TMFs []. TMFs are evolutionarily conserved golgins that bind Rab6, a ubiquitous ras-like GTP-binding Golgi protein, and contribute to Golgi organisation in animal [] and plant cells. The Rab6-binding domain appears to be the same region as this C-terminal family [].
Probab=83.14 E-value=18 Score=34.88 Aligned_cols=99 Identities=20% Similarity=0.194 Sum_probs=65.4
Q ss_pred CCCCCCcchHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHhhhhhhHHHHHHhhHHhhhHHHHHHHHhhh---hhhhhH
Q 003570 103 DDNLGSDGSVEKLKNEIAVMMRQVELSELELLSLRKQVAKESKRAQDQTRQIISLSSERDALTIECEQLRK---QNSIDI 179 (810)
Q Consensus 103 ed~l~sd~~iEkLKsE~~~l~Rq~e~selELQtLRKQi~KESKRgqdLsrEv~~lk~ERD~Lk~EcEqLks---qk~~~e 179 (810)
..+.|+--.|++|.+.|..+ +-|+++|+-++..=++....+..||..|-.+-|.++..+.++.. +-.--.
T Consensus 9 ~~~~~~~~~ve~L~s~lr~~-------E~E~~~l~~el~~l~~~r~~l~~Eiv~l~~~~e~~~~~~~~~~~L~~el~~l~ 81 (120)
T PF12325_consen 9 SSGGPSVQLVERLQSQLRRL-------EGELASLQEELARLEAERDELREEIVKLMEENEELRALKKEVEELEQELEELQ 81 (120)
T ss_pred ccCCchHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44555557899998887654 67899999998888888888888888888888777665554443 111122
Q ss_pred HHHhhhhhhhhhhHHHHHHHHHHhhhhhh
Q 003570 180 AEIERRLQSEEHLKFLQEEIREELNYEKE 208 (810)
Q Consensus 180 a~~~~~lq~e~D~~~llEElr~EL~yEKe 208 (810)
.+-...|+.-|--.-.++||+..|.--|+
T Consensus 82 ~ry~t~LellGEK~E~veEL~~Dv~DlK~ 110 (120)
T PF12325_consen 82 QRYQTLLELLGEKSEEVEELRADVQDLKE 110 (120)
T ss_pred HHHHHHHHHhcchHHHHHHHHHHHHHHHH
Confidence 33334566666333566677666654443
No 118
>KOG2129 consensus Uncharacterized conserved protein H4 [Function unknown]
Probab=83.12 E-value=1e+02 Score=36.08 Aligned_cols=222 Identities=18% Similarity=0.149 Sum_probs=115.9
Q ss_pred CCC-CcchHHHHHHHHHHHHhhhhhhHHHHHHHH---HHHHHHhhhhhhHHHHHHhhHHh------hhHHHHHHHHhhhh
Q 003570 105 NLG-SDGSVEKLKNEIAVMMRQVELSELELLSLR---KQVAKESKRAQDQTRQIISLSSE------RDALTIECEQLRKQ 174 (810)
Q Consensus 105 ~l~-sd~~iEkLKsE~~~l~Rq~e~selELQtLR---KQi~KESKRgqdLsrEv~~lk~E------RD~Lk~EcEqLksq 174 (810)
.+| |.-.-|.|-+-+.+|..+-.+...||+++. |-+-.+.+.----+++| -++.| -+.|=.++--|...
T Consensus 37 ~~p~sP~~~e~l~~rv~slsq~Nkvlk~elet~k~kcki~qeenr~l~~Asv~I-QaraeqeeEfisntLlkkiqal~ke 115 (552)
T KOG2129|consen 37 HEPFSPSPGESLGARVSSLSQRNKVLKGELETLKGKCKIMQEENRPLLLASVEI-QARAEQEEEFISNTLLKKIQALFKE 115 (552)
T ss_pred CCCCCCCCHHHHHHHHHHHHhhhhhhhhhHHhhhhHHHHHHhcCchhhhhhhHH-hhccchHHHHHHHHHHHHHHHhhcc
Confidence 345 666789999999999999999999999885 33334433322223332 22322 12233333333331
Q ss_pred h--------------hhhHHHHhhhhhhhhhhHHHHHHHHHHhhhhhhcchhhhhhhhhhhhhh--HHHHHHHHHHHHHH
Q 003570 175 N--------------SIDIAEIERRLQSEEHLKFLQEEIREELNYEKEVSAHLRLQLEKTQDSN--AELILAVKDLNEML 238 (810)
Q Consensus 175 k--------------~~~ea~~~~~lq~e~D~~~llEElr~EL~yEKelNaNL~LQLqKTQESN--sELilAVqDLeeML 238 (810)
+ ++.-......|+-+--+-.++-|..+|.--.|-+|.==+|+-.-.-+-| --|-.+.=+|+-+|
T Consensus 116 ketla~~Ye~eee~lTn~Lsrkl~qLr~ek~~lEq~leqeqef~vnKlm~ki~Klen~t~~kq~~leQLRre~V~lentl 195 (552)
T KOG2129|consen 116 KETLATVYEVEEEFLTNPLSRKLKQLRHEKLPLEQLLEQEQEFFVNKLMNKIRKLENKTLLKQNTLEQLRREAVQLENTL 195 (552)
T ss_pred ccccchhhhhhhhhccCchhHHHHHHHhhhccHHHHHHHHHHHHHHHHHHHHHHhhhhhHHhhhhHHHHHHHHHHHhhHH
Confidence 1 1122223335554444446667777777777777765555433333333 22333444566666
Q ss_pred HHhhhhhhh-hhhhhhhhhhhhh--hHHHH----------HHHHhhc-cCchhhHHHHHHHHHhhhHHHHhhhhHHHH--
Q 003570 239 EQKNMEISS-LSSKLEESKLVRE--DQLAL----------EALAKER-NKDKEVDMLKQKIRDQGDEIQFFKKHAEDL-- 302 (810)
Q Consensus 239 EqKn~EIs~-ls~~~~e~~~~~e--dq~al----------e~Lvke~-~~~~E~~~LkqKI~DL~~Eie~ykkerEeL-- 302 (810)
||-.--|++ |=+..+.. +.+. =|+.| .++.+.+ +..|+...++--|.-|..||+-||++.-.-
T Consensus 196 EQEqEalvN~LwKrmdkL-e~ekr~Lq~KlDqpvs~p~~prdia~~~~~~gD~a~~~~~hi~~l~~EveRlrt~l~~Aqk 274 (552)
T KOG2129|consen 196 EQEQEALVNSLWKRMDKL-EQEKRYLQKKLDQPVSTPSLPRDIAKIPDVHGDEAAAEKLHIDKLQAEVERLRTYLSRAQK 274 (552)
T ss_pred HHHHHHHHHHHHHHHHHH-HHHHHHHHHHhcCcccCCCchhhhhcCccccCchHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 665544443 11111100 0110 11112 1223332 335677888888888888999888665433
Q ss_pred --HHHHHHHHHHHHHHHhhhhhhhhHHH
Q 003570 303 --EIYIKQLTEDCQVLEQENQCLTSKLE 328 (810)
Q Consensus 303 --e~~ieQL~~D~E~LkqEN~~ls~kLE 328 (810)
..+|.|+..+--..+.+|..++-+|.
T Consensus 275 ~~~ek~~qy~~Ee~~~reen~rlQrkL~ 302 (552)
T KOG2129|consen 275 SYQEKLMQYRAEEVDHREENERLQRKLI 302 (552)
T ss_pred HHHHHHHHHHHHHhhHHHHHHHHHHHHH
Confidence 33455555555555566655554443
No 119
>KOG4809 consensus Rab6 GTPase-interacting protein involved in endosome-to-TGN transport [Intracellular trafficking, secretion, and vesicular transport]
Probab=82.31 E-value=1.2e+02 Score=36.43 Aligned_cols=395 Identities=22% Similarity=0.236 Sum_probs=0.0
Q ss_pred HHHHH----HHHHHhhhhhhHHHHHHhhHHhhhHHHHHHHHhhh-----------------------hhhhhHHHHhhhh
Q 003570 134 LSLRK----QVAKESKRAQDQTRQIISLSSERDALTIECEQLRK-----------------------QNSIDIAEIERRL 186 (810)
Q Consensus 134 QtLRK----Qi~KESKRgqdLsrEv~~lk~ERD~Lk~EcEqLks-----------------------qk~~~ea~~~~~l 186 (810)
++||- .|.+.-.++-++.+|..-++-+ |..-|+.|-+ -+++--..--+++
T Consensus 112 ~sLrq~kds~i~dlQ~q~k~lqrE~~nlkve---lelkeekLsssMnsIKTFwSpELKkeraLRkdEc~ris~~~eQ~~l 188 (654)
T KOG4809|consen 112 QSLRQLKDSLLADLQRQAKLLQREEHNLKVE---LELKEEKLSSSMNSIKTFWSPELKKERALRKDECKRISFCSEQNAL 188 (654)
T ss_pred HHHHhhhhhhhhhhHHHHHHHHHHhhhhhHH---HHHHHHHhcCcccccccccchhhcCcccCchhHHHHHHHHHHHHHh
Q ss_pred hhhh-h-hHHHHHHHHHHhhhhhhcchhhhhhhhhhh-------------hhhHHHHHHH--------------------
Q 003570 187 QSEE-H-LKFLQEEIREELNYEKEVSAHLRLQLEKTQ-------------DSNAELILAV-------------------- 231 (810)
Q Consensus 187 q~e~-D-~~~llEElr~EL~yEKelNaNL~LQLqKTQ-------------ESNsELilAV-------------------- 231 (810)
-.+| + .....--++.||.-..+.|-+|..++..-- .--.+=++.+
T Consensus 189 ~segNq~gsm~argl~~ELR~qr~rnq~Le~~ssS~~g~~~~~~~~~ae~~~~~~e~~llr~t~~~~e~riEtqkqtl~a 268 (654)
T KOG4809|consen 189 HSEGNQPGSMNARGLSAELRNQRARNQPLEINSSSAKGLGYTCLGRLAELLTTKEEQFLLRSTDPSGEQRIETQKQTLDA 268 (654)
T ss_pred hccCCchhhHHHHHHHHHHHHHHhhcchhhhhhhcccCCCchHHHHHHHhhhHHHHHHHHHhcCchHHHHHHHHHhhhhh
Q ss_pred -----HHHHHHHHHhhhhhhhhhhhhhhhhhhhhhHHHHHHHHhhccCchhhHHHHHHHHHh-----------hhHHHHh
Q 003570 232 -----KDLNEMLEQKNMEISSLSSKLEESKLVREDQLALEALAKERNKDKEVDMLKQKIRDQ-----------GDEIQFF 295 (810)
Q Consensus 232 -----qDLeeMLEqKn~EIs~ls~~~~e~~~~~edq~ale~Lvke~~~~~E~~~LkqKI~DL-----------~~Eie~y 295 (810)
..|.|||--|-+--++-...+. ..+..-.+-+-.++. .+ .+|..| ..||+.|
T Consensus 269 rdesIkkLlEmLq~kgmg~~~~~~df~------~~~~~a~~~~h~r~~-~e-----r~IerLkeqr~rderE~~EeIe~~ 336 (654)
T KOG4809|consen 269 RDESIKKLLEMLQRKGMGRSNQPRDFT------KANLSAHEMAHMRMK-VE-----RIIERLKEQRERDERERLEEIESF 336 (654)
T ss_pred HHHHHHHHHHHHHHhhcccccchhhHH------HHHHhHHHHHhhhch-HH-----HHHHHhcchhhhhHHHHHHHHHHH
Q ss_pred hhhHHHHHHHHHHHHHHHHHHHhhhhhhhhHHHHHHHHhhhhh-hhhhhhHhhHHHHHHHHHHHHHHHHHHhHHHhHhhH
Q 003570 296 KKHAEDLEIYIKQLTEDCQVLEQENQCLTSKLEKIQQQESMKS-RECIESLATIKELESQSERLEDKIKQQSEEYSESLI 374 (810)
Q Consensus 296 kkerEeLe~~ieQL~~D~E~LkqEN~~ls~kLEq~q~Qeql~~-~EcS~~~~~i~eLe~qve~LE~eLk~q~~efSesL~ 374 (810)
++++-.|..+|.+|.. .|+. +-++ ++-. ++.|++-+++.-+-+.+-.||.-|..+..+++++
T Consensus 337 ~ke~kdLkEkv~~lq~---~l~e-------ke~s-----l~dlkehassLas~glk~ds~Lk~leIalEqkkEec~km-- 399 (654)
T KOG4809|consen 337 RKENKDLKEKVNALQA---ELTE-------KESS-----LIDLKEHASSLASAGLKRDSKLKSLEIALEQKKEECSKM-- 399 (654)
T ss_pred HHHHHHHHHHHHHHHH---HHHH-------HHHH-----HHHHHHHHHHHHHHhhhhhhhhhHHHHHHHHHHHHHHHH--
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHhhhHHHHHHHHHHHHHHHHHhhhhhhh-----HHHHHHHHHHHHHHhhh
Q 003570 375 SINELECQVKELKRELDKQAQEFEDDIDAVTHAKTEQEQRAIRAEEELRKTRWKNTVT-----AERLQDEFRRLSVDMAS 449 (810)
Q Consensus 375 tI~eLE~qv~sLeeEl~~Qaq~fe~Dldam~~~k~EQEqRAi~AEeaLrKtR~~na~t-----aErLQeEf~~LS~qmsS 449 (810)
+.-..+|+.++--+|.+.-.+ +|+---+|+.++.-+-+
T Consensus 400 -------------------------------------e~qLkkAh~~~ddar~~pe~~d~i~~le~e~~~y~de~~kaqa 442 (654)
T KOG4809|consen 400 -------------------------------------EAQLKKAHNIEDDARMNPEFADQIKQLEKEASYYRDECGKAQA 442 (654)
T ss_pred -------------------------------------HHHHHHHHHhhHhhhcChhhHHHHHHHHHHHHHHHHHHHHHHH
Q ss_pred hhhhhHHHHHHHHHHHHHHHhhHHHHHHHHHHhHHHHhhhhhhhhccHHHHhHHHhhHHHHHHHHHHhhhhchhhhhHHh
Q 003570 450 KFDENEKLAMKAMTEANEQRMQKAHLEEMLQKANDELSLIKDQNGVKLQELSDQLEQKDKQIQKMYLELDHSSSQLIDEH 529 (810)
Q Consensus 450 t~eeNEklt~kA~~EaseLR~qk~~LEemLqk~neeL~~i~dq~e~kl~eL~~qld~k~k~ie~m~~Ele~kS~qle~~k 529 (810)
-++.+=-++.+.=.|-+.--.-.+.|| ++++||+. .--..|-+++... .|+-|+-.--
T Consensus 443 evdrlLeilkeveneKnDkdkkiaele----------r~~kdqnk-------kvaNlkHk~q~Ek-----kk~aq~lee~ 500 (654)
T KOG4809|consen 443 EVDRLLEILKEVENEKNDKDKKIAELE----------RHMKDQNK-------KVANLKHKQQLEK-----KKNAQLLEEV 500 (654)
T ss_pred HHHHHHHHHHHHHhhhccccchhhhcC----------chhhhhhh-------HHhhHHHHHHHHH-----HHHHHHHHHH
Q ss_pred hhHHHHHHhHHHHHHHHHHHHHHHHHhhhhhhhcccccCCCCCCcccchhhHHHhhhhhhhhhHHHHHHHHHHHHHHHHH
Q 003570 530 KSEAQKHEALSTEIHMLRTEIEKLRKEQYNLSEHGKRRDDNKPKVSTGETDMLIQKWNRERDDLEKKFASAKQEAAKAHE 609 (810)
Q Consensus 530 k~~ee~~~a~s~EI~~Lk~eie~L~~e~~~l~e~~~~~d~e~~k~s~~e~~~~lq~~~~er~el~~~~a~~kkeae~~~~ 609 (810)
+.+++++.+-|+-.+ |++|. ..+++.|....+|.+-++....-.+|-+.-++-|..+-.+.++
T Consensus 501 rrred~~~d~sqhlq-----~eel~------------~alektkQel~~tkarl~stqqslaEke~HL~nLr~errk~Le 563 (654)
T KOG4809|consen 501 RRREDSMADNSQHLQ-----IEELM------------NALEKTKQELDATKARLASTQQSLAEKEAHLANLRIERRKQLE 563 (654)
T ss_pred HHHHhhhcchHHHHH-----HHHHH------------HHHHHHhhChhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_pred HHHhhhc--------------cCchhHHHHhhHHHHHHHHH
Q 003570 610 ELISMRS--------------LKGENEMLIGNLQAEVENLK 636 (810)
Q Consensus 610 EL~~m~~--------------~kdEkE~~i~~LqsE~e~lk 636 (810)
|+..|+- .--.+...|.+++.||..+.
T Consensus 564 e~lemK~~a~k~~i~~d~~~~~~~~~~~~~~k~~~ev~~~~ 604 (654)
T KOG4809|consen 564 EILEMKKPAWKPGIHADMWRETHKPSNETVTKGSTEVTLAE 604 (654)
T ss_pred HHHHhhhhhhhcCCCHHHHHHHhhhhhhHHHhhHHHHHHHH
No 120
>PF08317 Spc7: Spc7 kinetochore protein; InterPro: IPR013253 This entry consists of cell division proteins which are required for kinetochore-spindle association [].
Probab=82.10 E-value=82 Score=34.33 Aligned_cols=214 Identities=21% Similarity=0.204 Sum_probs=113.6
Q ss_pred hhhhhhhhhHHHHHHHHHHHHHHHHhhhhhhhh-hhhhhhhhhhhhhHHHH--H--HHHhhccCchhhHHHHHHHHHhhh
Q 003570 216 QLEKTQDSNAELILAVKDLNEMLEQKNMEISSL-SSKLEESKLVREDQLAL--E--ALAKERNKDKEVDMLKQKIRDQGD 290 (810)
Q Consensus 216 QLqKTQESNsELilAVqDLeeMLEqKn~EIs~l-s~~~~e~~~~~edq~al--e--~Lvke~~~~~E~~~LkqKI~DL~~ 290 (810)
+|.=-+-|--||-.-+.+--.++.+...+|..- +-.++++...+.|..++ . .+||.+ +.|..|-.=-.|
T Consensus 69 ~Lely~~~c~EL~~~I~egr~~~~~~E~~~~~~nPpLf~EY~~a~~d~r~~m~~q~~~vK~~------aRl~aK~~WYeW 142 (325)
T PF08317_consen 69 MLELYQFSCRELKKYISEGRQIFEEIEEETYESNPPLFREYYTADPDMRLLMDNQFQLVKTY------ARLEAKKMWYEW 142 (325)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCHHHHHHHcCCHHHHHHHHHHHHHHHHH------HHHHHHHHHHHH
Confidence 444455566677777777777777777777652 11233333222221111 1 123332 222222211112
Q ss_pred HHHHhhhhHHHHHHHHHHHHHHHHHHHhhhhhhhhHHHHHHHHhhhhhhhhhhhHhhHHHHHHHHHHHH----HHHHHHh
Q 003570 291 EIQFFKKHAEDLEIYIKQLTEDCQVLEQENQCLTSKLEKIQQQESMKSRECIESLATIKELESQSERLE----DKIKQQS 366 (810)
Q Consensus 291 Eie~ykkerEeLe~~ieQL~~D~E~LkqEN~~ls~kLEq~q~Qeql~~~EcS~~~~~i~eLe~qve~LE----~eLk~q~ 366 (810)
=......=++.|...+.-|..|+..|...-..+..-+.... ........-+..|++.+..++ .+|...+
T Consensus 143 R~~ll~gl~~~L~~~~~~L~~D~~~L~~~~~~l~~~~~~l~-------~~~~~L~~e~~~Lk~~~~e~~~~D~~eL~~lr 215 (325)
T PF08317_consen 143 RMQLLEGLKEGLEENLELLQEDYAKLDKQLEQLDELLPKLR-------ERKAELEEELENLKQLVEEIESCDQEELEALR 215 (325)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHhhhhhcCHHHHHHHH
Confidence 22222223445555555555555555553333332222211 111222222222222222222 4555555
Q ss_pred HHHhHhhHhHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHhhhHHHHHHHHHHHHHHHHHhhhhhhhHHHHHHHHHHHHHH
Q 003570 367 EEYSESLISINELECQVKELKRELDKQAQEFEDDIDAVTHAKTEQEQRAIRAEEELRKTRWKNTVTAERLQDEFRRLSVD 446 (810)
Q Consensus 367 ~efSesL~tI~eLE~qv~sLeeEl~~Qaq~fe~Dldam~~~k~EQEqRAi~AEeaLrKtR~~na~taErLQeEf~~LS~q 446 (810)
.+....-..|......+..++. +.+....+++++...+.+.....-.|+..+.+.|.--.-.+.+|+..|..|-..
T Consensus 216 ~eL~~~~~~i~~~k~~l~el~~----el~~l~~~i~~~~~~k~~l~~eI~e~~~~~~~~r~~t~~Ev~~Lk~~~~~Le~~ 291 (325)
T PF08317_consen 216 QELAEQKEEIEAKKKELAELQE----ELEELEEKIEELEEQKQELLAEIAEAEKIREECRGWTRSEVKRLKAKVDALEKL 291 (325)
T ss_pred HHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHH
Confidence 5555555556655555555444 444667778899999999999999999999999988899999999999988643
No 121
>KOG0994 consensus Extracellular matrix glycoprotein Laminin subunit beta [Extracellular structures]
Probab=81.90 E-value=1.8e+02 Score=38.03 Aligned_cols=35 Identities=23% Similarity=0.324 Sum_probs=27.0
Q ss_pred HHHHhhHHhhhHHHHHHHHhhh-hhhhhHHHHhhhh
Q 003570 152 RQIISLSSERDALTIECEQLRK-QNSIDIAEIERRL 186 (810)
Q Consensus 152 rEv~~lk~ERD~Lk~EcEqLks-qk~~~ea~~~~~l 186 (810)
+++.+|..|+++|-+=+-+|+- -..+..+.+.+.+
T Consensus 1267 ~~LesLq~~~~~l~~~~keL~e~~~~ik~sdi~GA~ 1302 (1758)
T KOG0994|consen 1267 KDLESLQREFNGLLTTYKELREQLEKIKESDILGAF 1302 (1758)
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHhhccCchhHH
Confidence 8899999999999888888877 3346666666666
No 122
>KOG0933 consensus Structural maintenance of chromosome protein 2 (chromosome condensation complex Condensin, subunit E) [Chromatin structure and dynamics; Cell cycle control, cell division, chromosome partitioning]
Probab=81.15 E-value=1.7e+02 Score=37.43 Aligned_cols=252 Identities=22% Similarity=0.304 Sum_probs=146.2
Q ss_pred HHHHHhhhhhhhHHHHHHHHHHHHHHhh---hhhhhhHHHHHHHHHHHHHHHhhHHHHHHHHHHhHHHHhhhhhhhhccH
Q 003570 421 ELRKTRWKNTVTAERLQDEFRRLSVDMA---SKFDENEKLAMKAMTEANEQRMQKAHLEEMLQKANDELSLIKDQNGVKL 497 (810)
Q Consensus 421 aLrKtR~~na~taErLQeEf~~LS~qms---St~eeNEklt~kA~~EaseLR~qk~~LEemLqk~neeL~~i~dq~e~kl 497 (810)
+|-++|.+. .+--++++++..+...+- +...+-+++..++..+ ...||.+..++. ...+.+|
T Consensus 725 ~l~~~r~~~-~e~~~~~~~~~~~~e~v~e~~~~Ike~~~~~k~~~~~-------i~~lE~~~~d~~-------~~re~rl 789 (1174)
T KOG0933|consen 725 ALLEKRLEQ-NEFHKLLDDLKELLEEVEESEQQIKEKERALKKCEDK-------ISTLEKKMKDAK-------ANRERRL 789 (1174)
T ss_pred HHHHHHHhc-ChHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHhHhh-------hhhHhHH
Confidence 455555543 345667777766654332 1222222222222222 236677777663 3456789
Q ss_pred HHHhHHHhhHHHHHHHHHHhhhhchhhhhHHhhhHHHHHHhHHHHHHHHHHHHHHHHHhhhhhhhcccccCCCCCCcccc
Q 003570 498 QELSDQLEQKDKQIQKMYLELDHSSSQLIDEHKSEAQKHEALSTEIHMLRTEIEKLRKEQYNLSEHGKRRDDNKPKVSTG 577 (810)
Q Consensus 498 ~eL~~qld~k~k~ie~m~~Ele~kS~qle~~kk~~ee~~~a~s~EI~~Lk~eie~L~~e~~~l~e~~~~~d~e~~k~s~~ 577 (810)
.+|-+.|+.....++.-.-+++.+-...+..+-. ++++..||++++...+.+...+..|
T Consensus 790 kdl~keik~~k~~~e~~~~~~ek~~~e~e~l~lE----~e~l~~e~~~~k~~l~~~~~~~~~l----------------- 848 (1174)
T KOG0933|consen 790 KDLEKEIKTAKQRAEESSKELEKRENEYERLQLE----HEELEKEISSLKQQLEQLEKQISSL----------------- 848 (1174)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHH-----------------
Confidence 9999999999888888888877777666555433 3345666666666666555555544
Q ss_pred hhhHHHhhhhhhhhhHHHHHHHHHHHHHHHHHHHHhhhccCchhHHHH-------hhHHHHHHHHHHHHHHHHhhhhHHH
Q 003570 578 ETDMLIQKWNRERDDLEKKFASAKQEAAKAHEELISMRSLKGENEMLI-------GNLQAEVENLKVQQNKLQNSLIEEK 650 (810)
Q Consensus 578 e~~~~lq~~~~er~el~~~~a~~kkeae~~~~EL~~m~~~kdEkE~~i-------~~LqsE~e~lk~Q~~~LK~sL~~ee 650 (810)
..+...|..++..+.....+++.+|+-.+.---+-.+.| .+..++.-..+.....|=|-+..=+
T Consensus 849 ---------~~e~~~l~~kv~~~~~~~~~~~~el~~~k~k~~~~dt~i~~~~~~~e~~~~e~~~~~l~~kkle~e~~~~~ 919 (1174)
T KOG0933|consen 849 ---------KSELGNLEAKVDKVEKDVKKAQAELKDQKAKQRDIDTEISGLLTSQEKCLSEKSDGELERKKLEHEVTKLE 919 (1174)
T ss_pred ---------HHHHHHHHHHHHhHHhHHHHHHHHHHHHHHHHHhhhHHHhhhhhHHHHHHHHhhcccchHHHHHhHHHHhh
Confidence 556677888888888888888888876433222222333 3344455555555666667777777
Q ss_pred HHhhHHHHHHHHHHHHHHhhHHHHHhhhhcccccCCCCchhhhhHHHHHHHhhhhhhhhhhhhcccchhch
Q 003570 651 LEKDNLAKQVFQLKDELQKKKEEINRTGKGLKKYGGPVSDAQMTSMKERLRKGQKKLNKAELETSDNRIAV 721 (810)
Q Consensus 651 ~EKe~l~kQv~qLk~eL~KKe~~~~~~ekklk~s~g~~sd~~~~~~~~~ikeg~ik~~e~ale~St~~~~~ 721 (810)
.++.++++.|..|.++..--.++..-+.++-..+ -..--+++-.+++++.-|-+ -.+++.+-|.-++
T Consensus 920 ~e~~~~~k~v~~l~~k~~wi~~ek~~fgk~gt~y--Df~~~~p~~are~l~~Lq~k--~~~l~k~vn~~~m 986 (1174)
T KOG0933|consen 920 SEKANARKEVEKLLKKHEWIGDEKRLFGKKGTDY--DFESYDPHEAREELKKLQEK--KEKLEKTVNPKNM 986 (1174)
T ss_pred hhHHHHHHHHHHHHHhccchhHHHHhhcCCCCcc--ccccCCHhHHHHHHHHhhHH--HHHHHhhcCHHHH
Confidence 7888888888777766655555555443331111 01112345556666532222 2245555555543
No 123
>TIGR00634 recN DNA repair protein RecN. All proteins in this family for which functions are known are ATP binding proteins involved in the initiation of recombination and recombinational repair.
Probab=81.14 E-value=1.2e+02 Score=35.44 Aligned_cols=191 Identities=18% Similarity=0.175 Sum_probs=94.8
Q ss_pred HHHHHHhhhHHHHhhhhHHHHHHHHHHHHHHHHHHHhhhhhh----hhHHHHHHHHhhhhh-hhhhhhHhhHHH------
Q 003570 282 KQKIRDQGDEIQFFKKHAEDLEIYIKQLTEDCQVLEQENQCL----TSKLEKIQQQESMKS-RECIESLATIKE------ 350 (810)
Q Consensus 282 kqKI~DL~~Eie~ykkerEeLe~~ieQL~~D~E~LkqEN~~l----s~kLEq~q~Qeql~~-~EcS~~~~~i~e------ 350 (810)
.+++.++..++..+.++...+...++-|....+.|...|+.. ....+...+.+.-++ .-|...+..+.+
T Consensus 167 ~~~~~~~~~~L~~l~~~~~~~~~eld~L~~ql~ELe~~~l~~~E~e~L~~e~~~L~n~e~i~~~~~~~~~~L~~~~~~~~ 246 (563)
T TIGR00634 167 YQAWLKARQQLKDRQQKEQELAQRLDFLQFQLEELEEADLQPGEDEALEAEQQRLSNLEKLRELSQNALAALRGDVDVQE 246 (563)
T ss_pred HHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHhCCcCCCcHHHHHHHHHHHhCHHHHHHHHHHHHHHHhCCccccc
Confidence 333444444455545555556666666666666666666541 111122222222233 223322222211
Q ss_pred --HHHHHHHHHHHHHH-HhHHHhHhhHhHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHhhhHHHHHHHHHHHHHHHHHhh
Q 003570 351 --LESQSERLEDKIKQ-QSEEYSESLISINELECQVKELKRELDKQAQEFEDDIDAVTHAKTEQEQRAIRAEEELRKTRW 427 (810)
Q Consensus 351 --Le~qve~LE~eLk~-q~~efSesL~tI~eLE~qv~sLeeEl~~Qaq~fe~Dldam~~~k~EQEqRAi~AEeaLrKtR~ 427 (810)
.-..+......|.. -...|.+....+...-..+..+..++......++.|=+.+.. -+.|.. .+++..-
T Consensus 247 ~~~~~~l~~~~~~l~~~~d~~~~~~~~~l~~~~~~l~d~~~~l~~~~~~l~~dp~~L~e----le~RL~----~l~~Lkr 318 (563)
T TIGR00634 247 GSLLEGLGEAQLALASVIDGSLRELAEQVGNALTEVEEATRELQNYLDELEFDPERLNE----IEERLA----QIKRLKR 318 (563)
T ss_pred cCHHHHHHHHHHHHHHhhhHhHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCHHHHHH----HHHHHH----HHHHHHH
Confidence 11122222233333 344566666677777778888888888888887766665544 223332 3444444
Q ss_pred hhhhhHHHHHHHHHHHHHHhhhhhhhhHHHHHHHHHHHHHHHhhHHHHHHHHHHhHHHHhh
Q 003570 428 KNTVTAERLQDEFRRLSVDMASKFDENEKLAMKAMTEANEQRMQKAHLEEMLQKANDELSL 488 (810)
Q Consensus 428 ~na~taErLQeEf~~LS~qmsSt~eeNEklt~kA~~EaseLR~qk~~LEemLqk~neeL~~ 488 (810)
+|..+.+.+-..+..+..++..--...+ +...|..+...+.+.+.++-.+|..
T Consensus 319 Kyg~s~e~l~~~~~~l~~eL~~l~~~~~--------~le~L~~el~~l~~~l~~~a~~Ls~ 371 (563)
T TIGR00634 319 KYGASVEEVLEYAEKIKEELDQLDDSDE--------SLEALEEEVDKLEEELDKAAVALSL 371 (563)
T ss_pred HhCCCHHHHHHHHHHHHHHHHHHhCCHH--------HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 5556777777766666666654222221 3334444444444444444444443
No 124
>PF11559 ADIP: Afadin- and alpha -actinin-Binding; InterPro: IPR021622 This family is found in mammals where it is localised at cell-cell adherens junctions [], and in Sch. pombe and other fungi where it anchors spindle-pole bodies to spindle microtubules []. It is a coiled-coil structure, and in pombe, it is required for anchoring the minus end of spindle microtubules to the centrosome equivalent, the spindle-pole body. The name ADIP derives from the family being composed of Afadin- and alpha -Actinin-Binding Proteins Localised at Cell-Cell Adherens Junctions.
Probab=81.07 E-value=54 Score=31.57 Aligned_cols=92 Identities=25% Similarity=0.296 Sum_probs=64.9
Q ss_pred HHHHhhhHHHHhhhhHHHHHHHHHHHHHHHHHHHhhhhhhhhHHHHHHHHhhhhhhhhhhhHhhHHHHHHHHHHHHHHHH
Q 003570 284 KIRDQGDEIQFFKKHAEDLEIYIKQLTEDCQVLEQENQCLTSKLEKIQQQESMKSRECIESLATIKELESQSERLEDKIK 363 (810)
Q Consensus 284 KI~DL~~Eie~ykkerEeLe~~ieQL~~D~E~LkqEN~~ls~kLEq~q~Qeql~~~EcS~~~~~i~eLe~qve~LE~eLk 363 (810)
=|.+|..-.+-....+|.|...+..+..|.+.|...+..+..+++..+ -++.........+..++..+...++
T Consensus 39 ~i~~Ll~~~~r~~~~~e~l~~~~~~l~~d~~~l~~~~~rL~~~~~~~e-------re~~~~~~~~~~l~~~~~~~~~~~k 111 (151)
T PF11559_consen 39 CIYDLLQQRDRDMEQREDLSDKLRRLRSDIERLQNDVERLKEQLEELE-------RELASAEEKERQLQKQLKSLEAKLK 111 (151)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 345555556666678999999999999999999887777777777633 4455666667777777777777777
Q ss_pred HHhHHHhHhhHhHHHHHHH
Q 003570 364 QQSEEYSESLISINELECQ 382 (810)
Q Consensus 364 ~q~~efSesL~tI~eLE~q 382 (810)
..++++.-....|....+|
T Consensus 112 ~~kee~~klk~~~~~~~tq 130 (151)
T PF11559_consen 112 QEKEELQKLKNQLQQRKTQ 130 (151)
T ss_pred HHHHHHHHHHHHHHHHHHH
Confidence 7777666555555444443
No 125
>PF09728 Taxilin: Myosin-like coiled-coil protein; InterPro: IPR019132 Taxilin contains an extraordinarily long coiled-coil domain in its C-terminal half and is ubiquitously expressed. It is a novel binding partner of several syntaxin family members and is possibly involved in Ca(2+)-dependent exocytosis in neuroendocrine cells []. Gamma-taxilin, described as leucine zipper protein Factor Inhibiting ATF4-mediated Transcription (FIAT), localises to the nucleus in osteoblasts and dimerises with ATF4 to form inactive dimers, thus inhibiting ATF4-mediated transcription [].
Probab=80.61 E-value=95 Score=34.09 Aligned_cols=96 Identities=27% Similarity=0.351 Sum_probs=61.8
Q ss_pred ccCchhhHHHHHHHHHhhhHHHHhhhhHHHHHHHHHHHHHHHHHHHhhhhhhh---hHHHHHHHHhhhhhhhhhhhHhhH
Q 003570 272 RNKDKEVDMLKQKIRDQGDEIQFFKKHAEDLEIYIKQLTEDCQVLEQENQCLT---SKLEKIQQQESMKSRECIESLATI 348 (810)
Q Consensus 272 ~~~~~E~~~LkqKI~DL~~Eie~ykkerEeLe~~ieQL~~D~E~LkqEN~~ls---~kLEq~q~Qeql~~~EcS~~~~~i 348 (810)
..+..-+..|-+|..++..+.-...++.-.+..+..++..+++.+..++.... .+||. =|-.++...
T Consensus 18 ~~~eeK~~~L~kk~~ell~e~k~~~k~~~~~~Kk~~~l~kek~~l~~E~~k~~~~k~KLE~----------LCRELQk~N 87 (309)
T PF09728_consen 18 SSPEEKLEALCKKYAELLEEMKRLQKQLKKLQKKQEQLQKEKDQLQSELSKAILAKSKLES----------LCRELQKQN 87 (309)
T ss_pred CChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----------HHHHHHHHH
Confidence 33356788889999999888888888888999999999999999988877433 34444 255555555
Q ss_pred HHHHHHHHHH----HHHHHHHhHHHhHhhHhHH
Q 003570 349 KELESQSERL----EDKIKQQSEEYSESLISIN 377 (810)
Q Consensus 349 ~eLe~qve~L----E~eLk~q~~efSesL~tI~ 377 (810)
..+...+..+ +..-+..+..|..+|..|.
T Consensus 88 k~lkeE~~~~~~eee~kR~el~~kFq~~L~dIq 120 (309)
T PF09728_consen 88 KKLKEESKRRAREEEEKRKELSEKFQATLKDIQ 120 (309)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 5555333333 3333334444444444443
No 126
>PF15066 CAGE1: Cancer-associated gene protein 1 family
Probab=80.59 E-value=1e+02 Score=36.32 Aligned_cols=109 Identities=26% Similarity=0.436 Sum_probs=81.9
Q ss_pred HHhHHHHHHHHHHHHHHHHHhhhhhhhcccccCCCCCCcccchhhHHHhhhhhhhhhHHHHHHHHHHHHHHHHHHHHhhh
Q 003570 536 HEALSTEIHMLRTEIEKLRKEQYNLSEHGKRRDDNKPKVSTGETDMLIQKWNRERDDLEKKFASAKQEAAKAHEELISMR 615 (810)
Q Consensus 536 ~~a~s~EI~~Lk~eie~L~~e~~~l~e~~~~~d~e~~k~s~~e~~~~lq~~~~er~el~~~~a~~kkeae~~~~EL~~m~ 615 (810)
...|-.=|..||..|+.|-...+.+ ..|.+++++++.-+..-....+.+|.-
T Consensus 357 QqvfvDiinkLk~niEeLIedKY~v--------------------------iLEKnd~~k~lqnLqe~la~tqk~LqE-- 408 (527)
T PF15066_consen 357 QQVFVDIINKLKENIEELIEDKYRV--------------------------ILEKNDIEKTLQNLQEALANTQKHLQE-- 408 (527)
T ss_pred hhHHHHHHHHHHHHHHHHHHhHhHh--------------------------hhhhhhHHHHHHHHHHHHHHHHHHHHH--
Confidence 3456666888999999888777764 123455555555554444444444432
Q ss_pred ccCchhHHHHhhHHHHHHHHHHHHHHHHhhhhHHHHHhhHHHHHHHHHHHHHHhhHHHHHhh
Q 003570 616 SLKGENEMLIGNLQAEVENLKVQQNKLQNSLIEEKLEKDNLAKQVFQLKDELQKKKEEINRT 677 (810)
Q Consensus 616 ~~kdEkE~~i~~LqsE~e~lk~Q~~~LK~sL~~ee~EKe~l~kQv~qLk~eL~KKe~~~~~~ 677 (810)
...|| .+||.+|..+++-|--|...-..+=.+|.+--.|-..+.+-|-+||+++..+
T Consensus 409 -sr~eK----etLqlelkK~k~nyv~LQEry~~eiQqKnksvsqclEmdk~LskKeeeverL 465 (527)
T PF15066_consen 409 -SRNEK----ETLQLELKKIKANYVHLQERYMTEIQQKNKSVSQCLEMDKTLSKKEEEVERL 465 (527)
T ss_pred -HHhhH----HHHHHHHHHHhhhHHHHHHHHHHHHHHhhhHHHHHHHHHHHhhhhHHHHHHH
Confidence 23444 4689999999999999999999999999999999999999999999999744
No 127
>PF08614 ATG16: Autophagy protein 16 (ATG16); InterPro: IPR013923 Macroautophagy is a bulk degradation process induced by starvation in eukaryotic cells. In yeast, 15 Apg proteins coordinate the formation of autophagosomes. No molecule involved in autophagy has yet been identified in higher eukaryotes []. The pre-autophagosomal structure contains at least five Apg proteins: Apg1p, Apg2p, Apg5p, Aut7p/Apg8p and Apg16p. It is found in the vacuole []. The C-terminal glycine of Apg12p is conjugated to a lysine residue of Apg5p via an isopeptide bond. During autophagy, cytoplasmic components are enclosed in autophagosomes and delivered to lysosomes/vacuoles. Auotphagy protein 16 (Apg16) has been shown to be bind to Apg5 and is required for the function of the Apg12p-Apg5p conjugate []. Autophagy protein 5 (Apg5) is directly required for the import of aminopeptidase I via the cytoplasm-to-vacuole targeting pathway []. This entry represents auotphagy protein 16 (Apg16), which is required for the function of the Apg12p-Apg5p conjugate.; PDB: 3A7O_D 3A7P_B.
Probab=79.50 E-value=16 Score=36.72 Aligned_cols=72 Identities=25% Similarity=0.288 Sum_probs=49.1
Q ss_pred HHHHHHHHHHHHHHHHHHHhhhccCchhHHHHhhHHHHHHHHHHHHHHHHhhhhHHHHHhhHHHHHHHHHHH
Q 003570 594 EKKFASAKQEAAKAHEELISMRSLKGENEMLIGNLQAEVENLKVQQNKLQNSLIEEKLEKDNLAKQVFQLKD 665 (810)
Q Consensus 594 ~~~~a~~kkeae~~~~EL~~m~~~kdEkE~~i~~LqsE~e~lk~Q~~~LK~sL~~ee~EKe~l~kQv~qLk~ 665 (810)
...|+.+..+...+...+..+..-=.|+...+..|+.|+.+|..+++-+-.-+..=+.|...|=+-..+.++
T Consensus 115 ~~~l~~l~~~~~~L~~~~~~l~~~l~ek~k~~e~l~DE~~~L~l~~~~~e~k~~~l~~En~~Lv~Rwm~~k~ 186 (194)
T PF08614_consen 115 ERRLAELEAELAQLEEKIKDLEEELKEKNKANEILQDELQALQLQLNMLEEKLRKLEEENRELVERWMQRKA 186 (194)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333344444444444444444444478899999999999999999999988888877777777666555443
No 128
>KOG0964 consensus Structural maintenance of chromosome protein 3 (sister chromatid cohesion complex Cohesin, subunit SMC3) [Cell cycle control, cell division, chromosome partitioning]
Probab=78.56 E-value=2.1e+02 Score=36.76 Aligned_cols=214 Identities=19% Similarity=0.285 Sum_probs=144.4
Q ss_pred HHHHhhhhHHHHHHHHHHHHHHHHHHHhhhhhhhhHHHHHHHHhhhhhhhhhhhHhhHHHHHHHHHHHHHHHHHHhHHHh
Q 003570 291 EIQFFKKHAEDLEIYIKQLTEDCQVLEQENQCLTSKLEKIQQQESMKSRECIESLATIKELESQSERLEDKIKQQSEEYS 370 (810)
Q Consensus 291 Eie~ykkerEeLe~~ieQL~~D~E~LkqEN~~ls~kLEq~q~Qeql~~~EcS~~~~~i~eLe~qve~LE~eLk~q~~efS 370 (810)
|.-+|-++..+...+|++|..++...-.++-+....+...+ .+.-..-..|.+|++-++.|=.+......+.+
T Consensus 224 EYtiYdrEl~E~~~~l~~le~~r~~~~e~s~~~~~~~~~~~-------d~~~~~~~~i~ele~~l~~l~~ekeq~~a~~t 296 (1200)
T KOG0964|consen 224 EYTIYDRELNEINGELERLEEDRSSAPEESEQYIDALDKVE-------DESEDLKCEIKELENKLTNLREEKEQLKARET 296 (1200)
T ss_pred hhhhhhhHHHHHHHHHHHHHHHHhccchhhhhHHHHHHHHH-------HHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 66677788888999999999999998888887776666522 33333444577888888888788888888899
Q ss_pred HhhHhHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHhhhHHHHHHHHHHHHHHHHHhhhhhhhHH---HHHHHHHHHHHHh
Q 003570 371 ESLISINELECQVKELKRELDKQAQEFEDDIDAVTHAKTEQEQRAIRAEEELRKTRWKNTVTAE---RLQDEFRRLSVDM 447 (810)
Q Consensus 371 esL~tI~eLE~qv~sLeeEl~~Qaq~fe~Dldam~~~k~EQEqRAi~AEeaLrKtR~~na~taE---rLQeEf~~LS~qm 447 (810)
..+..--.|+-++++|..++..-.+.=-.+++.+..-+-+-+++- .-|-+|-.+|+--++ ++-.-+..|..+-
T Consensus 297 ~~~k~kt~lel~~kdlq~~i~~n~q~r~~~l~~l~~~~~ki~e~~----~EL~~I~Pky~~l~~ee~~~~~rl~~l~~~~ 372 (1200)
T KOG0964|consen 297 KISKKKTKLELKIKDLQDQITGNEQQRNLALHVLQKVKDKIEEKK----DELSKIEPKYNSLVDEEKRLKKRLAKLEQKQ 372 (1200)
T ss_pred HHHHHhhhhhhhhHHHHHHhhhhhhhhhhHHHHHHHHHHHHHHHH----HHHHHhhhHHHHHHhHHHHHHHHHHHHHHHH
Confidence 999999999999999999999888888888888776554444433 356666666654332 3333333333311
Q ss_pred h------------hhhhhhHHHHHHHHHHHHHHHhhHHHHHHHHHHhHHHHhhhhhhhhccHHHH---hHHHhhHHHHHH
Q 003570 448 A------------SKFDENEKLAMKAMTEANEQRMQKAHLEEMLQKANDELSLIKDQNGVKLQEL---SDQLEQKDKQIQ 512 (810)
Q Consensus 448 s------------St~eeNEklt~kA~~EaseLR~qk~~LEemLqk~neeL~~i~dq~e~kl~eL---~~qld~k~k~ie 512 (810)
. +.-+++.+.+..-+...+..=..+.-.|.-||+--+.+.. +++.+++++ .--|+.-..+|+
T Consensus 373 ~~l~~Kqgr~sqFssk~eRDkwir~ei~~l~~~i~~~ke~e~~lq~e~~~~e~---~l~~~~e~i~~l~~si~e~~~r~~ 449 (1200)
T KOG0964|consen 373 RDLLAKQGRYSQFSSKEERDKWIRSEIEKLKRGINDTKEQENILQKEIEDLES---ELKEKLEEIKELESSINETKGRME 449 (1200)
T ss_pred HHHHHhhccccccCcHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHH---HHHHHHHHHHHHHhhHhhhhhHHH
Confidence 1 2348899999988888888877888778777765444444 444444433 333333334444
Q ss_pred HHHHhh
Q 003570 513 KMYLEL 518 (810)
Q Consensus 513 ~m~~El 518 (810)
....++
T Consensus 450 ~~~~~~ 455 (1200)
T KOG0964|consen 450 EFDAEN 455 (1200)
T ss_pred HHHHHH
Confidence 443333
No 129
>PF15397 DUF4618: Domain of unknown function (DUF4618)
Probab=77.90 E-value=1.1e+02 Score=33.33 Aligned_cols=187 Identities=21% Similarity=0.250 Sum_probs=100.1
Q ss_pred HHHHHHHHHHHHHHHHHhhhhhhhHHHHHHHHHHHHHHhhhhhhhhHHHHHHHHHHHHHHHhhHHHHHHHHHHhHHHHhh
Q 003570 409 TEQEQRAIRAEEELRKTRWKNTVTAERLQDEFRRLSVDMASKFDENEKLAMKAMTEANEQRMQKAHLEEMLQKANDELSL 488 (810)
Q Consensus 409 ~EQEqRAi~AEeaLrKtR~~na~taErLQeEf~~LS~qmsSt~eeNEklt~kA~~EaseLR~qk~~LEemLqk~neeL~~ 488 (810)
..|-..-..|-.+| ...|....+.++.|+...-..+ =...+.|..|...|.+.+++++++|+-
T Consensus 44 Lqqy~~~~~~i~~l---e~~~~~~l~~ak~eLqe~eek~--------------e~~l~~Lq~ql~~l~akI~k~~~el~~ 106 (258)
T PF15397_consen 44 LQQYDIYRTAIDIL---EYSNHKQLQQAKAELQEWEEKE--------------ESKLSKLQQQLEQLDAKIQKTQEELNF 106 (258)
T ss_pred HHHHHHHHHHHHHH---HccChHHHHHHHHHHHHHHHHH--------------HhHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34444444443333 3345555666666665433332 345788999999999999999999987
Q ss_pred hhh----hhhccHHHHhHHHhhHHHHHHHHHHhhhhchhhhhHHhhhHHHHHHhHHHHHHHHHHHHHHHHHhhhhhhhcc
Q 003570 489 IKD----QNGVKLQELSDQLEQKDKQIQKMYLELDHSSSQLIDEHKSEAQKHEALSTEIHMLRTEIEKLRKEQYNLSEHG 564 (810)
Q Consensus 489 i~d----q~e~kl~eL~~qld~k~k~ie~m~~Ele~kS~qle~~kk~~ee~~~a~s~EI~~Lk~eie~L~~e~~~l~e~~ 564 (810)
... +|-+| +-||-....+|++.. +.--+++.+..+-...+...|+..|+.-+.+|-.- +....
T Consensus 107 L~TYkD~EYPvK----~vqIa~L~rqlq~lk---~~qqdEldel~e~~~~el~~l~~~~q~k~~~il~~------~~~k~ 173 (258)
T PF15397_consen 107 LSTYKDHEYPVK----AVQIANLVRQLQQLK---DSQQDELDELNEMRQMELASLSRKIQEKKEEILSS------AAEKT 173 (258)
T ss_pred HHHHhhhhhhHH----HHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH------HHHHH
Confidence 544 22222 222322333333321 11223444455555555566666666555555321 10000
Q ss_pred cccCCCCCCcccchhhHHHhhhhhhhhhHHHHHHHHHHHHHHHHHHHHhhhccCchhHHHHhhHHHHHHHHHHHHHHHHh
Q 003570 565 KRRDDNKPKVSTGETDMLIQKWNRERDDLEKKFASAKQEAAKAHEELISMRSLKGENEMLIGNLQAEVENLKVQQNKLQN 644 (810)
Q Consensus 565 ~~~d~e~~k~s~~e~~~~lq~~~~er~el~~~~a~~kkeae~~~~EL~~m~~~kdEkE~~i~~LqsE~e~lk~Q~~~LK~ 644 (810)
. .+ ...++++.. . +-...+.++..-|..-++=+..|..|..||+.|..+--+.+.
T Consensus 174 ~--------~~--~~~~l~~~~-~--------------~N~~m~kei~~~re~i~el~e~I~~L~~eV~~L~~~~~~~Re 228 (258)
T PF15397_consen 174 Q--------SP--MQPALLQRT-L--------------ENQVMQKEIVQFREEIDELEEEIPQLRAEVEQLQAQAQDPRE 228 (258)
T ss_pred H--------hh--chHHHHHHH-H--------------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcchHH
Confidence 0 00 011111111 1 122234444444555566778899999999999998888887
Q ss_pred hhhHHH
Q 003570 645 SLIEEK 650 (810)
Q Consensus 645 sL~~ee 650 (810)
..|.+-
T Consensus 229 ~iF~dv 234 (258)
T PF15397_consen 229 VIFADV 234 (258)
T ss_pred HhhHHH
Confidence 777653
No 130
>PF07926 TPR_MLP1_2: TPR/MLP1/MLP2-like protein; InterPro: IPR012929 This domain is found in a number of proteins, including TPR protein (P12270 from SWISSPROT) and yeast myosin-like proteins 1 (MLP1, Q02455 from SWISSPROT) and 2 (MLP2, P40457 from SWISSPROT). These proteins share a number of features; for example, they all have coiled-coil regions and all three are associated with nuclear pores [, , ]. TPR is thought to be a component of nuclear pore complex- attached intranuclear filaments [], and is implicated in nuclear protein import []. Moreover, its N-terminal region is involved in the activation of oncogenic kinases, possibly by mediating the dimerisation of kinase domains or by targeting these kinases to the nuclear pore complex []. MLP1 and MLP2 are involved in the process of telomere length regulation, where they are thought to interact with proteins such as Tel1p and modulate their activity []. ; GO: 0006606 protein import into nucleus, 0005643 nuclear pore
Probab=77.23 E-value=70 Score=30.63 Aligned_cols=68 Identities=24% Similarity=0.407 Sum_probs=49.7
Q ss_pred cHHHHhHHHhhHHHHHHHHHHhhhhchhhhhHHhhhHHHHHHhHHHHHHHHHHHHHHHHHhhhhhhhc
Q 003570 496 KLQELSDQLEQKDKQIQKMYLELDHSSSQLIDEHKSEAQKHEALSTEIHMLRTEIEKLRKEQYNLSEH 563 (810)
Q Consensus 496 kl~eL~~qld~k~k~ie~m~~Ele~kS~qle~~kk~~ee~~~a~s~EI~~Lk~eie~L~~e~~~l~e~ 563 (810)
.|..|..++......|..+-.+++.....|...+..=+..-..|-.||..++..|..|...+..|..|
T Consensus 60 ~L~~lr~e~~~~~~~~~~l~~~~~~a~~~l~~~e~sw~~qk~~le~e~~~~~~r~~dL~~QN~lLh~Q 127 (132)
T PF07926_consen 60 ELQQLREELQELQQEINELKAEAESAKAELEESEASWEEQKEQLEKELSELEQRIEDLNEQNKLLHDQ 127 (132)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 35556666677777777777777777777777777777777777888888888888777777666655
No 131
>COG4026 Uncharacterized protein containing TOPRIM domain, potential nuclease [General function prediction only]
Probab=77.16 E-value=20 Score=38.73 Aligned_cols=91 Identities=26% Similarity=0.296 Sum_probs=74.8
Q ss_pred HHHHhhhhHHHHHHHHHHHHHHHHHHHhhhhhhhhHHHHHHHHhhhhhhhhhhhHhhHHHHHHHHHHHHHHHHHHhHHHh
Q 003570 291 EIQFFKKHAEDLEIYIKQLTEDCQVLEQENQCLTSKLEKIQQQESMKSRECIESLATIKELESQSERLEDKIKQQSEEYS 370 (810)
Q Consensus 291 Eie~ykkerEeLe~~ieQL~~D~E~LkqEN~~ls~kLEq~q~Qeql~~~EcS~~~~~i~eLe~qve~LE~eLk~q~~efS 370 (810)
+.-..|++++++..+++++-.+.+.|..+|-.+.++++..| .-+..|+...-+|+.+++..-.+++
T Consensus 129 ~~~d~ke~~ee~kekl~E~~~EkeeL~~eleele~e~ee~~--------------erlk~le~E~s~LeE~~~~l~~ev~ 194 (290)
T COG4026 129 EYMDLKEDYEELKEKLEELQKEKEELLKELEELEAEYEEVQ--------------ERLKRLEVENSRLEEMLKKLPGEVY 194 (290)
T ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--------------HHHHHHHHHHHHHHHHHHhchhHHH
Confidence 44466789999999999999999999999999998888743 3456778888889999999988888
Q ss_pred HhhHhHHHHHHHHHHHHHHHHHHHH
Q 003570 371 ESLISINELECQVKELKRELDKQAQ 395 (810)
Q Consensus 371 esL~tI~eLE~qv~sLeeEl~~Qaq 395 (810)
+-=....+|+-.+..++..+=+.+-
T Consensus 195 ~L~~r~~ELe~~~El~e~~~i~dl~ 219 (290)
T COG4026 195 DLKKRWDELEPGVELPEEELISDLV 219 (290)
T ss_pred HHHHHHHHhcccccchHHHHHHHHH
Confidence 8888888898888888777655443
No 132
>PF14197 Cep57_CLD_2: Centrosome localisation domain of PPC89
Probab=77.12 E-value=16 Score=32.29 Aligned_cols=63 Identities=25% Similarity=0.384 Sum_probs=53.1
Q ss_pred chHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHhhhhhhHHHHHHhhHHhhhHHHHHHHHhh
Q 003570 110 GSVEKLKNEIAVMMRQVELSELELLSLRKQVAKESKRAQDQTRQIISLSSERDALTIECEQLR 172 (810)
Q Consensus 110 ~~iEkLKsE~~~l~Rq~e~selELQtLRKQi~KESKRgqdLsrEv~~lk~ERD~Lk~EcEqLk 172 (810)
.+|.-|+.-+..+.|+..+.+.++-+|+.+=.--.++-++.-.++..|++|-++|+.|.+.++
T Consensus 5 a~~~~Lr~rLd~~~rk~~~~~~~~k~L~~ERd~~~~~l~~a~~e~~~Lk~E~e~L~~el~~~r 67 (69)
T PF14197_consen 5 AEIATLRNRLDSLTRKNSVHEIENKRLRRERDSAERQLGDAYEENNKLKEENEALRKELEELR 67 (69)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 367789999999999999999999999998777777788888888888888888888866554
No 133
>PF15619 Lebercilin: Ciliary protein causing Leber congenital amaurosis disease
Probab=76.95 E-value=96 Score=32.10 Aligned_cols=61 Identities=23% Similarity=0.234 Sum_probs=37.9
Q ss_pred hhhhhHHHHHHHHHHHHHHhhhhhhhhHHHHHHHHHHHHHHHhhHHHHHHHHHHhHHHHhh
Q 003570 428 KNTVTAERLQDEFRRLSVDMASKFDENEKLAMKAMTEANEQRMQKAHLEEMLQKANDELSL 488 (810)
Q Consensus 428 ~na~taErLQeEf~~LS~qmsSt~eeNEklt~kA~~EaseLR~qk~~LEemLqk~neeL~~ 488 (810)
+|-.+.+.|+..+..+...|.......-.+-.++--..+.++.|...--.....+..++..
T Consensus 115 knL~eReeL~~kL~~~~~~l~~~~~ki~~Lek~leL~~k~~~rql~~e~kK~~~~~~~~~~ 175 (194)
T PF15619_consen 115 KNLAEREELQRKLSQLEQKLQEKEKKIQELEKQLELENKSFRRQLASEKKKHKEAQEEVKS 175 (194)
T ss_pred CCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHH
Confidence 4455577788888777777777666666666666555555555555555555555544444
No 134
>COG5185 HEC1 Protein involved in chromosome segregation, interacts with SMC proteins [Cell division and chromosome partitioning]
Probab=76.75 E-value=1.3e+02 Score=35.73 Aligned_cols=165 Identities=21% Similarity=0.264 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHhhHHHHHHHHHHhHHHHhhhhhhhhccHHHHhHHHhhHHHHHHHHHHhhhhchhhhhHHhhhHHH
Q 003570 455 EKLAMKAMTEANEQRMQKAHLEEMLQKANDELSLIKDQNGVKLQELSDQLEQKDKQIQKMYLELDHSSSQLIDEHKSEAQ 534 (810)
Q Consensus 455 Eklt~kA~~EaseLR~qk~~LEemLqk~neeL~~i~dq~e~kl~eL~~qld~k~k~ie~m~~Ele~kS~qle~~kk~~ee 534 (810)
++..-.-+++...|..++.-|++|.+.| ..++.+-+.++.-.-++.+-+..+++.-..=+.
T Consensus 263 ~~~~~~i~~~i~~lk~~n~~l~e~i~ea-------------------~k~s~~i~~l~ek~r~l~~D~nk~~~~~~~mk~ 323 (622)
T COG5185 263 EKFVHIINTDIANLKTQNDNLYEKIQEA-------------------MKISQKIKTLREKWRALKSDSNKYENYVNAMKQ 323 (622)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH-------------------HHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHH
Q ss_pred HHHhHHHHHHHHHHHHHHHHHhhhhhhhcccccCCCCCCcccchhhHHHhhhhhhhhhHHHHHHHHHHHHHHHHHHHHhh
Q 003570 535 KHEALSTEIHMLRTEIEKLRKEQYNLSEHGKRRDDNKPKVSTGETDMLIQKWNRERDDLEKKFASAKQEAAKAHEELISM 614 (810)
Q Consensus 535 ~~~a~s~EI~~Lk~eie~L~~e~~~l~e~~~~~d~e~~k~s~~e~~~~lq~~~~er~el~~~~a~~kkeae~~~~EL~~m 614 (810)
+.+.|.--|..|+.+|+ ....++..|.+.+..|++...+--=-..-.
T Consensus 324 K~~~~~g~l~kl~~eie---------------------------------~kEeei~~L~~~~d~L~~q~~kq~Is~e~f 370 (622)
T COG5185 324 KSQEWPGKLEKLKSEIE---------------------------------LKEEEIKALQSNIDELHKQLRKQGISTEQF 370 (622)
T ss_pred HHHhcchHHHHHHHHHH---------------------------------HHHHHHHHHHhhHHHHHHHHHhcCCCHHHH
Q ss_pred hccCchhHHHHhhHHHHHHHHHHHHHHHHhhhhHHHHHhhHHHHHHHHHHHHHHhhHHHHH
Q 003570 615 RSLKGENEMLIGNLQAEVENLKVQQNKLQNSLIEEKLEKDNLAKQVFQLKDELQKKKEEIN 675 (810)
Q Consensus 615 ~~~kdEkE~~i~~LqsE~e~lk~Q~~~LK~sL~~ee~EKe~l~kQv~qLk~eL~KKe~~~~ 675 (810)
..+.-|+|.+-+ ++.....|.+.|..+...-++|-.-..+-|..+=..+..--+.++
T Consensus 371 e~mn~Ere~L~r----eL~~i~~~~~~L~k~V~~~~leaq~~~~slek~~~~~~sl~~~i~ 427 (622)
T COG5185 371 ELMNQEREKLTR----ELDKINIQSDKLTKSVKSRKLEAQGIFKSLEKTLRQYDSLIQNIT 427 (622)
T ss_pred HHHHHHHHHHHH----HHHHhcchHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHhc
No 135
>KOG4593 consensus Mitotic checkpoint protein MAD1 [Cell cycle control, cell division, chromosome partitioning]
Probab=76.60 E-value=2e+02 Score=35.49 Aligned_cols=157 Identities=20% Similarity=0.279 Sum_probs=109.8
Q ss_pred hhhhHHHHHHHHHHHHHHHHHHHhhhhhhhhHHHHHHHHhhhhhhhhhhhHhhHHHHHHHHHHHHHHHHHHhHHHhHhhH
Q 003570 295 FKKHAEDLEIYIKQLTEDCQVLEQENQCLTSKLEKIQQQESMKSRECIESLATIKELESQSERLEDKIKQQSEEYSESLI 374 (810)
Q Consensus 295 ykkerEeLe~~ieQL~~D~E~LkqEN~~ls~kLEq~q~Qeql~~~EcS~~~~~i~eLe~qve~LE~eLk~q~~efSesL~ 374 (810)
|++...++...+--++.-|+.=...+|.+...|.+.+ + .++++++.+-.++-......-+-.+
T Consensus 78 ~kr~el~~~k~~~i~~r~~~~~~dr~~~~~~~l~~~q--~---------------a~~~~e~~lq~q~e~~~n~~q~~~~ 140 (716)
T KOG4593|consen 78 HKRAELELTKAQSILARNYEAEVDRKHKLLTRLRQLQ--E---------------ALKGQEEKLQEQLERNRNQCQANLK 140 (716)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--H---------------HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3456667777777888888888888888888877744 2 2355555555555555555566677
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHhhhHHHHHHHHHHHHHHHHHhhhhhhhHHHHHHHHHHHHHHhhhhhhhh
Q 003570 375 SINELECQVKELKRELDKQAQEFEDDIDAVTHAKTEQEQRAIRAEEELRKTRWKNTVTAERLQDEFRRLSVDMASKFDEN 454 (810)
Q Consensus 375 tI~eLE~qv~sLeeEl~~Qaq~fe~Dldam~~~k~EQEqRAi~AEeaLrKtR~~na~taErLQeEf~~LS~qmsSt~eeN 454 (810)
.|.+|-.....=--++....+.|.+=+-.++....=|+.+|.+-+-.|.+--.....-+.+++++...+-
T Consensus 141 k~~el~~e~~~k~ae~~~lr~k~dss~s~~q~e~~~~~~~~~~~~s~l~~~eke~~~~~~ql~~~~q~~~---------- 210 (716)
T KOG4593|consen 141 KELELLREKEDKLAELGTLRNKLDSSLSELQWEVMLQEMRAKRLHSELQNEEKELDRQHKQLQEENQKIQ---------- 210 (716)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----------
Confidence 7777777777777788899999999999999999999999988876665544444444444444443321
Q ss_pred HHHHHHHHHHHHHHHhhHHHHHHHHH
Q 003570 455 EKLAMKAMTEANEQRMQKAHLEEMLQ 480 (810)
Q Consensus 455 Eklt~kA~~EaseLR~qk~~LEemLq 480 (810)
..-.++.+...-++|++..+..|-
T Consensus 211 --~~~~~l~e~~~~~qq~a~~~~ql~ 234 (716)
T KOG4593|consen 211 --ELQASLEERADHEQQNAELEQQLS 234 (716)
T ss_pred --HHHHHHHHHHHHHHHHhhHHHHHH
Confidence 123456677777788877776664
No 136
>PF09738 DUF2051: Double stranded RNA binding protein (DUF2051); InterPro: IPR019139 This entry represents transcriptional repressors which preferentially bind to the GC-rich consensus sequence (5'-AGCCCCCGGCG-3') and may regulate expression of TNF, EGFR and PDGFA. They may control smooth muscle cell proliferation following artery injury through PDGFA repression and may also bind double-stranded RNA. They interact with the leucine-rich repeat domain of human flightless-I (FliI) protein.
Probab=76.58 E-value=8.7 Score=42.08 Aligned_cols=37 Identities=30% Similarity=0.412 Sum_probs=32.2
Q ss_pred chhhhhhhhhhhhhhHHHHHHHHHHHHHHHHhhhhhh
Q 003570 210 SAHLRLQLEKTQDSNAELILAVKDLNEMLEQKNMEIS 246 (810)
Q Consensus 210 NaNL~LQLqKTQESNsELilAVqDLeeMLEqKn~EIs 246 (810)
..-|-++|+|.=+-|=+|+.-|+.|-..|++....-.
T Consensus 214 ~g~LDvRLkKl~~eke~L~~qv~klk~qLee~~~~~~ 250 (302)
T PF09738_consen 214 DGSLDVRLKKLADEKEELLEQVRKLKLQLEERQSEGR 250 (302)
T ss_pred CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccc
Confidence 6678889999999999999999999999988655443
No 137
>PF04156 IncA: IncA protein; InterPro: IPR007285 Chlamydia trachomatis is an obligate intracellular bacterium that develops within a parasitophorous vacuole termed an inclusion. The inclusion is nonfusogenic with lysosomes but intercepts lipids from a host cell exocytic pathway. Initiation of chlamydial development is concurrent with modification of the inclusion membrane by a set of C. trachomatis-encoded proteins collectively designated Incs. One of these Incs, IncA (Inclusion membrane protein A), is functionally associated with the homotypic fusion of inclusions [].
Probab=76.54 E-value=82 Score=31.08 Aligned_cols=62 Identities=18% Similarity=0.419 Sum_probs=31.8
Q ss_pred hhHHHHHHHHHHHHHHHHHHhHHHhHhhHhHHHHHHHHHHHH---HHHHHHHHHHHhhHHHHHhh
Q 003570 346 ATIKELESQSERLEDKIKQQSEEYSESLISINELECQVKELK---RELDKQAQEFEDDIDAVTHA 407 (810)
Q Consensus 346 ~~i~eLe~qve~LE~eLk~q~~efSesL~tI~eLE~qv~sLe---eEl~~Qaq~fe~Dldam~~~ 407 (810)
..+.++..++..+..+|.......++....+..++.....+. +......+.|..+...+...
T Consensus 81 ~e~~~~~~~l~~l~~el~~l~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~e 145 (191)
T PF04156_consen 81 GELSELQQQLQQLQEELDQLQERIQELESELEKLKEDLQELRELLKSVEERLDSLDESIKELEKE 145 (191)
T ss_pred hhHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 345556666666666666666655555555555555444444 23333333444444443333
No 138
>COG1340 Uncharacterized archaeal coiled-coil protein [Function unknown]
Probab=76.25 E-value=1.3e+02 Score=33.38 Aligned_cols=46 Identities=26% Similarity=0.357 Sum_probs=32.2
Q ss_pred HHhhccCchhhHHHHHHHHHhhhHHHHhhhhHHHHHHHHHHHHHHH
Q 003570 268 LAKERNKDKEVDMLKQKIRDQGDEIQFFKKHAEDLEIYIKQLTEDC 313 (810)
Q Consensus 268 Lvke~~~~~E~~~LkqKI~DL~~Eie~ykkerEeLe~~ieQL~~D~ 313 (810)
|-++-.+++...-...++.+|..+|+..+....++.+.|.+|..+.
T Consensus 143 L~k~le~~~k~~e~~~~~~el~aei~~lk~~~~e~~eki~~la~ea 188 (294)
T COG1340 143 LRKELEDAKKALEENEKLKELKAEIDELKKKAREIHEKIQELANEA 188 (294)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4444444555555666777778888888888888888888887755
No 139
>PF07200 Mod_r: Modifier of rudimentary (Mod(r)) protein; InterPro: IPR009851 This entry represents a conserved region approximately 150 residues long within a number of eukaryotic proteins that show homology with Drosophila melanogaster Modifier of rudimentary (Mod(r)) proteins. The N-terminal half of Mod(r) proteins is acidic, whereas the C-terminal half is basic [], and both of these regions are represented in this family.; PDB: 2CAZ_F 2P22_C 2F66_F.
Probab=76.18 E-value=75 Score=30.45 Aligned_cols=85 Identities=27% Similarity=0.395 Sum_probs=56.0
Q ss_pred HHHHHHHHHHhhhhhhhhHHHHHHHHhhhhhhhhhhhHhhHHHHHHHHHHHHHHHHHHhHHHhHhhHhHHHHHHHHHHHH
Q 003570 308 QLTEDCQVLEQENQCLTSKLEKIQQQESMKSRECIESLATIKELESQSERLEDKIKQQSEEYSESLISINELECQVKELK 387 (810)
Q Consensus 308 QL~~D~E~LkqEN~~ls~kLEq~q~Qeql~~~EcS~~~~~i~eLe~qve~LE~eLk~q~~efSesL~tI~eLE~qv~sLe 387 (810)
.+-..++.|-..|+.+.-+|+... .+|......+..|+.++..+..+++.....||... -..-|...+...+
T Consensus 38 ~l~~~n~~lAe~nL~~~~~l~~~r-------~~l~~~~~~~~~L~~~~~~k~~~~~~l~~~~s~~~-l~~~L~~~~~e~e 109 (150)
T PF07200_consen 38 ELLAENEELAEQNLSLEPELEELR-------SQLQELYEELKELESEYQEKEQQQDELSSNYSPDA-LLARLQAAASEAE 109 (150)
T ss_dssp HHHHHHHHHHHHH----HHHHHHH-------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHCHHHHH-HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhcccchHHHHHH-------HHHHHHHHHHHHHHHHHHHHHHHHHHHHccCCHHH-HHHHHHHHHHHHH
Confidence 333344444455655555666622 44566677788899999999999999988888765 4455888888888
Q ss_pred HHHHHHHHHHHhh
Q 003570 388 RELDKQAQEFEDD 400 (810)
Q Consensus 388 eEl~~Qaq~fe~D 400 (810)
++-+.=+..|.+.
T Consensus 110 eeSe~lae~fl~g 122 (150)
T PF07200_consen 110 EESEELAEEFLDG 122 (150)
T ss_dssp HHHHHHC-S-SSS
T ss_pred HHHHHHHHHHhCC
Confidence 8888888888643
No 140
>PF06005 DUF904: Protein of unknown function (DUF904); InterPro: IPR009252 Cell division protein ZapB is a non-essential, abundant cell division factor that is required for proper Z-ring formation. It is recruited early to the divisome by direct interaction with FtsZ, stimulating Z-ring assembly and thereby promoting cell division earlier in the cell cycle. Its recruitment to the Z-ring requires functional FtsA or ZipA.; GO: 0000917 barrier septum formation, 0043093 cytokinesis by binary fission, 0005737 cytoplasm; PDB: 2JEE_A.
Probab=75.65 E-value=31 Score=30.73 Aligned_cols=48 Identities=25% Similarity=0.396 Sum_probs=41.5
Q ss_pred hhHHHHHHHHHhhhHHHHhhhhHHHHHHHHHHHHHHHHHHHhhhhhhh
Q 003570 277 EVDMLKQKIRDQGDEIQFFKKHAEDLEIYIKQLTEDCQVLEQENQCLT 324 (810)
Q Consensus 277 E~~~LkqKI~DL~~Eie~ykkerEeLe~~ieQL~~D~E~LkqEN~~ls 324 (810)
-...|+.||.-+.+-|...+.+.++|..+-..|....+.|+++|..+.
T Consensus 5 ~l~~LE~ki~~aveti~~Lq~e~eeLke~n~~L~~e~~~L~~en~~L~ 52 (72)
T PF06005_consen 5 LLEQLEEKIQQAVETIALLQMENEELKEKNNELKEENEELKEENEQLK 52 (72)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHH
Confidence 456789999999999999889999999988888888888888888776
No 141
>PF10473 CENP-F_leu_zip: Leucine-rich repeats of kinetochore protein Cenp-F/LEK1; InterPro: IPR019513 Cenp-F, a centromeric kinetochore, microtubule-binding protein consisting of two 1,600-amino acid-long coils, is essential for the full functioning of the mitotic checkpoint pathway [, ]. There are several leucine-rich repeats along the sequence of LEK1 that are considered to be zippers, though they do not appear to be binding DNA directly in this instance []. ; GO: 0008134 transcription factor binding, 0042803 protein homodimerization activity, 0045502 dynein binding
Probab=73.56 E-value=1e+02 Score=30.78 Aligned_cols=34 Identities=24% Similarity=0.273 Sum_probs=17.1
Q ss_pred HHHHhhhhHHHHHHHHHH-------HHHHHHHHHhhhhhhh
Q 003570 291 EIQFFKKHAEDLEIYIKQ-------LTEDCQVLEQENQCLT 324 (810)
Q Consensus 291 Eie~ykkerEeLe~~ieQ-------L~~D~E~LkqEN~~ls 324 (810)
+.+.+++..+.|..+|.. |+.+...|+.++-+|.
T Consensus 46 daEn~k~eie~L~~el~~lt~el~~L~~EL~~l~sEk~~L~ 86 (140)
T PF10473_consen 46 DAENSKAEIETLEEELEELTSELNQLELELDTLRSEKENLD 86 (140)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 444555555556655555 3444444444444444
No 142
>PRK04778 septation ring formation regulator EzrA; Provisional
Probab=73.09 E-value=2e+02 Score=33.85 Aligned_cols=127 Identities=15% Similarity=0.287 Sum_probs=75.7
Q ss_pred HHhHhhHhHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHhhhHHHHHHHHHHHHHHHH-------HhhhhhhhHHHHHHHH
Q 003570 368 EYSESLISINELECQVKELKRELDKQAQEFEDDIDAVTHAKTEQEQRAIRAEEELRK-------TRWKNTVTAERLQDEF 440 (810)
Q Consensus 368 efSesL~tI~eLE~qv~sLeeEl~~Qaq~fe~Dldam~~~k~EQEqRAi~AEeaLrK-------tR~~na~taErLQeEf 440 (810)
.|...-..|+.++..|...+. +.......|+.+.....++-........-.+. -|+.+..++.-|.+.+
T Consensus 99 ~f~~a~~~~~~~~~~l~~~e~----~~~~i~~~l~~l~~~e~~nr~~v~~l~~~y~~~rk~ll~~~~~~G~a~~~le~~l 174 (569)
T PRK04778 99 RFRKAKHEINEIESLLDLIEE----DIEQILEELQELLESEEKNREEVEQLKDLYRELRKSLLANRFSFGPALDELEKQL 174 (569)
T ss_pred cHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCccccchHHHHHHHH
Confidence 455555556555555554444 44455555666665555555554444443333 3556777888888777
Q ss_pred HHHHHHhhhhhhhhHHHH-----HHHHHHHHHHHhhHHHHHHHHHHhHHHHhhhhhhhhccHHHHhH
Q 003570 441 RRLSVDMASKFDENEKLA-----MKAMTEANEQRMQKAHLEEMLQKANDELSLIKDQNGVKLQELSD 502 (810)
Q Consensus 441 ~~LS~qmsSt~eeNEklt-----~kA~~EaseLR~qk~~LEemLqk~neeL~~i~dq~e~kl~eL~~ 502 (810)
..|-. .|+.=+.+| .+|-.-...++.+...|+.++..+=.=+.-++..+-.+|++|..
T Consensus 175 ~~~e~----~f~~f~~l~~~Gd~~~A~e~l~~l~~~~~~l~~~~~~iP~l~~~~~~~~P~ql~el~~ 237 (569)
T PRK04778 175 ENLEE----EFSQFVELTESGDYVEAREILDQLEEELAALEQIMEEIPELLKELQTELPDQLQELKA 237 (569)
T ss_pred HHHHH----HHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHH
Confidence 76654 444444454 46667777888888888888777755555555555555555543
No 143
>KOG1899 consensus LAR transmembrane tyrosine phosphatase-interacting protein liprin [General function prediction only]
Probab=72.78 E-value=2.4e+02 Score=34.72 Aligned_cols=132 Identities=23% Similarity=0.285 Sum_probs=67.0
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHhhhHHHHHHHHHHHHHHHHHhhhh--hhhHHHHHHH---------HHHH
Q 003570 375 SINELECQVKELKRELDKQAQEFEDDIDAVTHAKTEQEQRAIRAEEELRKTRWKN--TVTAERLQDE---------FRRL 443 (810)
Q Consensus 375 tI~eLE~qv~sLeeEl~~Qaq~fe~Dldam~~~k~EQEqRAi~AEeaLrKtR~~n--a~taErLQeE---------f~~L 443 (810)
++.+||+|-=.|--|+.. +---+.+|.+++.|+|.+.--+|.-+-.++-.+ .+.-||||-| +..|
T Consensus 168 srtsLETqKlDLmaevSe----LKLkltalEkeq~e~E~K~R~se~l~qevn~~kv~e~~~erlqye~klkstk~e~a~L 243 (861)
T KOG1899|consen 168 SRTSLETQKLDLMAEVSE----LKLKLTALEKEQNETEKKLRLSENLMQEVNQSKVGEVVQERLQYETKLKSTKGEMAPL 243 (861)
T ss_pred hhhhHHHHHhHHHHHHHH----hHHHHHHHHHHhhhHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHhhcccccchhhhH
Confidence 334444444444333332 222344455555555555555555554444221 2344556543 4456
Q ss_pred HHHhhhhhhhhHHHHHHHHHH------HHHHHhhHHHHHHHHHHhHHHHhhhhhhhhccHHHHhHHHhh--HHHHHHHHH
Q 003570 444 SVDMASKFDENEKLAMKAMTE------ANEQRMQKAHLEEMLQKANDELSLIKDQNGVKLQELSDQLEQ--KDKQIQKMY 515 (810)
Q Consensus 444 S~qmsSt~eeNEklt~kA~~E------aseLR~qk~~LEemLqk~neeL~~i~dq~e~kl~eL~~qld~--k~k~ie~m~ 515 (810)
-.|++-+-++-+++..+++.= ---+|-+ -|.++=+.+=....|-+-++++|.+-++. |.++|-++.
T Consensus 244 ~Eq~~eK~~e~~rl~~~lv~~~~~d~e~~~~rd~------~lk~a~eslm~ane~kdr~ie~lr~~ln~y~k~~~iv~i~ 317 (861)
T KOG1899|consen 244 REQRSEKNDEEMRLLRTLVQRLMADGEHKSLRDN------TLKNALESLMRANEQKDRFIESLRNYLNNYDKNAQIVRIL 317 (861)
T ss_pred HHHHhhhhhHHHHHHHHHHHHHhhcccchhhHHH------HHHHHHHHHHhhchhhhhHHHHHHHHhhhhhhhhhhhhhh
Confidence 666666666666655554432 1223333 45555555555556666677777777775 445555554
Q ss_pred H
Q 003570 516 L 516 (810)
Q Consensus 516 ~ 516 (810)
+
T Consensus 318 q 318 (861)
T KOG1899|consen 318 Q 318 (861)
T ss_pred c
Confidence 4
No 144
>PF08317 Spc7: Spc7 kinetochore protein; InterPro: IPR013253 This entry consists of cell division proteins which are required for kinetochore-spindle association [].
Probab=72.49 E-value=1.5e+02 Score=32.32 Aligned_cols=78 Identities=18% Similarity=0.231 Sum_probs=52.7
Q ss_pred HHHhhHHHHHHHHHHHHHHHHhhhhHHHHHhhHHHHHHHHHHHHHHhhHHHHHhhhhcccccCCCCchhhhhHHHHHHH
Q 003570 623 MLIGNLQAEVENLKVQQNKLQNSLIEEKLEKDNLAKQVFQLKDELQKKKEEINRTGKGLKKYGGPVSDAQMTSMKERLR 701 (810)
Q Consensus 623 ~~i~~LqsE~e~lk~Q~~~LK~sL~~ee~EKe~l~kQv~qLk~eL~KKe~~~~~~ekklk~s~g~~sd~~~~~~~~~ik 701 (810)
..+..|+.+|..+..+...+|..|.+=+.+...+...|-.+......-..++...++.+...+|. |..++..++.++.
T Consensus 209 ~eL~~lr~eL~~~~~~i~~~k~~l~el~~el~~l~~~i~~~~~~k~~l~~eI~e~~~~~~~~r~~-t~~Ev~~Lk~~~~ 286 (325)
T PF08317_consen 209 EELEALRQELAEQKEEIEAKKKELAELQEELEELEEKIEELEEQKQELLAEIAEAEKIREECRGW-TRSEVKRLKAKVD 286 (325)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCC-CHHHHHHHHHHHH
Confidence 44566666666666666666666666666666666666666666666666666666666655554 6677877777766
No 145
>TIGR03007 pepcterm_ChnLen polysaccharide chain length determinant protein, PEP-CTERM locus subfamily. Members of this protein family belong to the family of polysaccharide chain length determinant proteins (pfam02706). All are found in species that encode the PEP-CTERM/exosortase system predicted to act in protein sorting in a number of Gram-negative bacteria, and are found near the epsH homolog that is the putative exosortase gene.
Probab=72.21 E-value=1.8e+02 Score=32.90 Aligned_cols=134 Identities=13% Similarity=0.201 Sum_probs=78.2
Q ss_pred HHHHHHHHHHHHhhhhhhhhhhhhhhhhhhhhhHHHHHHHHhhcc--CchhhHHHHHHHHHhhhHHHHhhhhHHHHHHHH
Q 003570 229 LAVKDLNEMLEQKNMEISSLSSKLEESKLVREDQLALEALAKERN--KDKEVDMLKQKIRDQGDEIQFFKKHAEDLEIYI 306 (810)
Q Consensus 229 lAVqDLeeMLEqKn~EIs~ls~~~~e~~~~~edq~ale~Lvke~~--~~~E~~~LkqKI~DL~~Eie~ykkerEeLe~~i 306 (810)
.+..-|+.-+.+.+.++......+ .++-..+. ..+....+..+|.++...+...+.++-.++.++
T Consensus 161 ~~~~fl~~ql~~~~~~L~~ae~~l-------------~~f~~~~~~~~~~~~~~~~~~l~~l~~~l~~~~~~l~~~~a~~ 227 (498)
T TIGR03007 161 SAQRFIDEQIKTYEKKLEAAENRL-------------KAFKQENGGILPDQEGDYYSEISEAQEELEAARLELNEAIAQR 227 (498)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH-------------HHHHHhCcccCccchhhHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 356666666666666555544333 33322221 122334455666666666665555555555555
Q ss_pred HHHHHHHHHHHhhhhhhhhHHHHHHHHhhhhhhhhhhhHhhHHHHHHHHHHHHHHHHHHhHHHhHhhHhHHHHHHHHHHH
Q 003570 307 KQLTEDCQVLEQENQCLTSKLEKIQQQESMKSRECIESLATIKELESQSERLEDKIKQQSEEYSESLISINELECQVKEL 386 (810)
Q Consensus 307 eQL~~D~E~LkqEN~~ls~kLEq~q~Qeql~~~EcS~~~~~i~eLe~qve~LE~eLk~q~~efSesL~tI~eLE~qv~sL 386 (810)
..|..-.. ..+..+. ...-+.+..+..++..++.++..+...|.+---.|..|..++..|
T Consensus 228 ~~l~~~l~---~~~~~~~-----------------~~~~~~~~~l~~~l~~l~~~l~~l~~~y~~~hP~v~~l~~qi~~l 287 (498)
T TIGR03007 228 DALKRQLG---GEEPVLL-----------------AGSSVANSELDGRIEALEKQLDALRLRYTDKHPDVIATKREIAQL 287 (498)
T ss_pred HHHHHHhc---cCCCCcC-----------------cccccCCCchHHHHHHHHHHHHHHHHHhcccChHHHHHHHHHHHH
Confidence 54443111 0000000 001124557788888899999999999998888999999999988
Q ss_pred HHHHHHHHH
Q 003570 387 KRELDKQAQ 395 (810)
Q Consensus 387 eeEl~~Qaq 395 (810)
+..+.....
T Consensus 288 ~~~l~~~~~ 296 (498)
T TIGR03007 288 EEQKEEEGS 296 (498)
T ss_pred HHHHHhhcc
Confidence 888776543
No 146
>PF07106 TBPIP: Tat binding protein 1(TBP-1)-interacting protein (TBPIP); InterPro: IPR010776 This family consists of several eukaryotic TBP-1 interacting protein (TBPIP) sequences. TBP-1 has been demonstrated to interact with the human immunodeficiency virus type 1 (HIV-1) viral protein Tat, then modulate the essential replication process of HIV. In addition, TBP-1 has been shown to be a component of the 26S proteasome, a basic multiprotein complex that degrades ubiquitinated proteins in an ATP-dependent fashion. Human TBPIP interacts with human TBP-1 then modulates the inhibitory action of human TBP-1 on HIV-Tat-mediated transactivation [].
Probab=72.14 E-value=37 Score=33.35 Aligned_cols=88 Identities=26% Similarity=0.337 Sum_probs=49.9
Q ss_pred HhhhhhhhhhHHHHHHHHHHHHHHHHHHHHhhhccC--chhHHHHhhHHHHHHHHHHHHHHHHhhhhH-HHHHhhHHHHH
Q 003570 583 IQKWNRERDDLEKKFASAKQEAAKAHEELISMRSLK--GENEMLIGNLQAEVENLKVQQNKLQNSLIE-EKLEKDNLAKQ 659 (810)
Q Consensus 583 lq~~~~er~el~~~~a~~kkeae~~~~EL~~m~~~k--dEkE~~i~~LqsE~e~lk~Q~~~LK~sL~~-ee~EKe~l~kQ 659 (810)
+..-+.++.+|...++.++.+...+..||..+.+.. +|=...|..|..++..+......|+..-.. ...|+.++.+.
T Consensus 74 l~~ld~ei~~L~~el~~l~~~~k~l~~eL~~L~~~~t~~el~~~i~~l~~e~~~l~~kL~~l~~~~~~vs~ee~~~~~~~ 153 (169)
T PF07106_consen 74 LAELDAEIKELREELAELKKEVKSLEAELASLSSEPTNEELREEIEELEEEIEELEEKLEKLRSGSKPVSPEEKEKLEKE 153 (169)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCCCHHHHHHHHHH
Confidence 334445566777777777777776667776666644 444455666666666666666666542211 23445555555
Q ss_pred HHHHHHHHHhh
Q 003570 660 VFQLKDELQKK 670 (810)
Q Consensus 660 v~qLk~eL~KK 670 (810)
.-.+.++..++
T Consensus 154 ~~~~~k~w~kR 164 (169)
T PF07106_consen 154 YKKWRKEWKKR 164 (169)
T ss_pred HHHHHHHHHHH
Confidence 55555554443
No 147
>PF11559 ADIP: Afadin- and alpha -actinin-Binding; InterPro: IPR021622 This family is found in mammals where it is localised at cell-cell adherens junctions [], and in Sch. pombe and other fungi where it anchors spindle-pole bodies to spindle microtubules []. It is a coiled-coil structure, and in pombe, it is required for anchoring the minus end of spindle microtubules to the centrosome equivalent, the spindle-pole body. The name ADIP derives from the family being composed of Afadin- and alpha -Actinin-Binding Proteins Localised at Cell-Cell Adherens Junctions.
Probab=72.01 E-value=66 Score=31.01 Aligned_cols=96 Identities=24% Similarity=0.326 Sum_probs=72.3
Q ss_pred hhhhhhhHHHHHHHHHHHHHHHHHHHHhhhccCchhHHHHhhHHHHHHHHHHHHHHHHhhhhHHHHHhhHHHHHHHH---
Q 003570 586 WNRERDDLEKKFASAKQEAAKAHEELISMRSLKGENEMLIGNLQAEVENLKVQQNKLQNSLIEEKLEKDNLAKQVFQ--- 662 (810)
Q Consensus 586 ~~~er~el~~~~a~~kkeae~~~~EL~~m~~~kdEkE~~i~~LqsE~e~lk~Q~~~LK~sL~~ee~EKe~l~kQv~q--- 662 (810)
....+..|..++..+..+.......+.+++.--.+.+.-+..++.....+..++..+.+.+-...-|-.+++..+.+
T Consensus 50 ~~~~~e~l~~~~~~l~~d~~~l~~~~~rL~~~~~~~ere~~~~~~~~~~l~~~~~~~~~~~k~~kee~~klk~~~~~~~t 129 (151)
T PF11559_consen 50 DMEQREDLSDKLRRLRSDIERLQNDVERLKEQLEELERELASAEEKERQLQKQLKSLEAKLKQEKEELQKLKNQLQQRKT 129 (151)
T ss_pred HHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34456677777777777777777777777777777788888888888888888888888887777777777666554
Q ss_pred -HHHHHHhhHHHHHhhhhcc
Q 003570 663 -LKDELQKKKEEINRTGKGL 681 (810)
Q Consensus 663 -Lk~eL~KKe~~~~~~ekkl 681 (810)
..-+++||+-++..+-.+|
T Consensus 130 q~~~e~rkke~E~~kLk~rL 149 (151)
T PF11559_consen 130 QYEHELRKKEREIEKLKERL 149 (151)
T ss_pred HHHHHHHHHHHHHHHHHHHh
Confidence 4568899999888775554
No 148
>PF10234 Cluap1: Clusterin-associated protein-1; InterPro: IPR019366 This protein of 413 amino acids contains a central coiled-coil domain, possibly the region that binds to clusterin. Cluap1 expression is highest in the nucleus and gradually increases during late S to G2/M phases of the cell cycle and returns to the basal level in the G0/G1 phases. In addition, it is upregulated in colon cancer tissues compared to corresponding non-cancerous mucosa. It thus plays a crucial role in the life of the cell [].
Probab=71.96 E-value=68 Score=34.99 Aligned_cols=90 Identities=21% Similarity=0.387 Sum_probs=67.6
Q ss_pred hHHHHHHHHHhhhHHHHhhhhHHHHHHHHHHHHHHHHHHHhhhhhhhhHHHHHHHHhhhhhhhhhhhHhhHHHHHHHHHH
Q 003570 278 VDMLKQKIRDQGDEIQFFKKHAEDLEIYIKQLTEDCQVLEQENQCLTSKLEKIQQQESMKSRECIESLATIKELESQSER 357 (810)
Q Consensus 278 ~~~LkqKI~DL~~Eie~ykkerEeLe~~ieQL~~D~E~LkqEN~~ls~kLEq~q~Qeql~~~EcS~~~~~i~eLe~qve~ 357 (810)
+..+.+.|..+...++....|--.|+.+|+.-..+++-..+ +|..-| |--|+-++|+ +.
T Consensus 171 i~~~~~~~~~~~~~l~~l~~de~~Le~KIekkk~ELER~qK-------RL~sLq----------~vRPAfmdEy----Ek 229 (267)
T PF10234_consen 171 IKAVQQQLQQTQQQLNNLASDEANLEAKIEKKKQELERNQK-------RLQSLQ----------SVRPAFMDEY----EK 229 (267)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-------HHHHHH----------hcChHHHHHH----HH
Confidence 34455555666666666677778888888888888887777 666632 2235556665 57
Q ss_pred HHHHHHHHhHHHhHhhHhHHHHHHHHHHHHH
Q 003570 358 LEDKIKQQSEEYSESLISINELECQVKELKR 388 (810)
Q Consensus 358 LE~eLk~q~~efSesL~tI~eLE~qv~sLee 388 (810)
||.+|+.+...|..++-.+..||.|+....+
T Consensus 230 lE~EL~~lY~~Y~~kfRNl~yLe~qle~~~~ 260 (267)
T PF10234_consen 230 LEEELQKLYEIYVEKFRNLDYLEHQLEEYNR 260 (267)
T ss_pred HHHHHHHHHHHHHHHHHhHHHHHHHHHHHHH
Confidence 8999999999999999999999999887654
No 149
>PF05010 TACC: Transforming acidic coiled-coil-containing protein (TACC); InterPro: IPR007707 This family contains the proteins TACC 1, 2 and 3, found concentrated in the centrosomes of eukaryotes which may play a conserved role in organising centrosomal microtubules. The human TACC proteins have been linked to cancer and TACC2 has been identified as a possible tumour suppressor (AZU-1) [].
Probab=70.77 E-value=1.5e+02 Score=31.36 Aligned_cols=80 Identities=21% Similarity=0.250 Sum_probs=41.6
Q ss_pred HHHHHHHhhhhhhhHHHHHHHHHHHHHHhhhhhh----hhHHHHHHHHHHHHHHHhhHHHHHHHHHHhHHHHhhhhhhhh
Q 003570 419 EEELRKTRWKNTVTAERLQDEFRRLSVDMASKFD----ENEKLAMKAMTEANEQRMQKAHLEEMLQKANDELSLIKDQNG 494 (810)
Q Consensus 419 EeaLrKtR~~na~taErLQeEf~~LS~qmsSt~e----eNEklt~kA~~EaseLR~qk~~LEemLqk~neeL~~i~dq~e 494 (810)
|++|++.--.+.-.+...+.-|.-|=.+....++ +-..+...+=+|+..|+++.+.. +
T Consensus 113 EE~Lkk~~~ey~~~l~~~eqry~aLK~hAeekL~~ANeei~~v~~~~~~e~~aLqa~lkk~------------------e 174 (207)
T PF05010_consen 113 EETLKKCIEEYEERLKKEEQRYQALKAHAEEKLEKANEEIAQVRSKHQAELLALQASLKKE------------------E 174 (207)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHH------------------H
Confidence 4455555555555555555555555554444433 12223333344444444443333 4
Q ss_pred ccHHHHhHHHhhHHHHHHHHHH
Q 003570 495 VKLQELSDQLEQKDKQIQKMYL 516 (810)
Q Consensus 495 ~kl~eL~~qld~k~k~ie~m~~ 516 (810)
+++.-|-..|..|++..+.+..
T Consensus 175 ~~~~SLe~~LeQK~kEn~ELtk 196 (207)
T PF05010_consen 175 MKVQSLEESLEQKTKENEELTK 196 (207)
T ss_pred HHHHHHHHHHHHHHHHHHHHHH
Confidence 5666677777777777776643
No 150
>PF04156 IncA: IncA protein; InterPro: IPR007285 Chlamydia trachomatis is an obligate intracellular bacterium that develops within a parasitophorous vacuole termed an inclusion. The inclusion is nonfusogenic with lysosomes but intercepts lipids from a host cell exocytic pathway. Initiation of chlamydial development is concurrent with modification of the inclusion membrane by a set of C. trachomatis-encoded proteins collectively designated Incs. One of these Incs, IncA (Inclusion membrane protein A), is functionally associated with the homotypic fusion of inclusions [].
Probab=70.24 E-value=1.2e+02 Score=30.03 Aligned_cols=13 Identities=23% Similarity=0.572 Sum_probs=4.8
Q ss_pred HHHHHHHhhhHHH
Q 003570 281 LKQKIRDQGDEIQ 293 (810)
Q Consensus 281 LkqKI~DL~~Eie 293 (810)
..+.+..+..|++
T Consensus 86 ~~~~l~~l~~el~ 98 (191)
T PF04156_consen 86 LQQQLQQLQEELD 98 (191)
T ss_pred HHHHHHHHHHHHH
Confidence 3333333333333
No 151
>PF13166 AAA_13: AAA domain
Probab=70.06 E-value=2.3e+02 Score=33.35 Aligned_cols=106 Identities=21% Similarity=0.300 Sum_probs=56.3
Q ss_pred chhhHHHhhhhhhhhhHHHHHHHHHHHHHHHHHHHHhhhccCchhHHHHhhHHHHHHHHHHHHHHHHhhhhHHHHHhhHH
Q 003570 577 GETDMLIQKWNRERDDLEKKFASAKQEAAKAHEELISMRSLKGENEMLIGNLQAEVENLKVQQNKLQNSLIEEKLEKDNL 656 (810)
Q Consensus 577 ~e~~~~lq~~~~er~el~~~~a~~kkeae~~~~EL~~m~~~kdEkE~~i~~LqsE~e~lk~Q~~~LK~sL~~ee~EKe~l 656 (810)
......+..-+..+.+.+..+.-++++...+...+...-. .+-..-|..+..++..+...+..++..+..-..+...+
T Consensus 366 ~~l~~~i~~~n~~i~~~n~~~~~~~~~~~~~~~~~~~~~~--~~~~~~i~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~ 443 (712)
T PF13166_consen 366 DELNSIIDELNELIEEHNEKIDNLKKEQNELKDKLWLHLI--AKLKEDIEEYQKEIKELEKEINSLEKKLKKAKEEIKKI 443 (712)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3344445555555555555555555555444444332111 11112233445555556666666666666666667777
Q ss_pred HHHHHHHHHHHHhhHHHHHhhhhccccc
Q 003570 657 AKQVFQLKDELQKKKEEINRTGKGLKKY 684 (810)
Q Consensus 657 ~kQv~qLk~eL~KKe~~~~~~ekklk~s 684 (810)
.+++..|+..+..-......+-+.|+..
T Consensus 444 ~~~i~~l~~~~~~~~~~~~~iN~~L~~~ 471 (712)
T PF13166_consen 444 EKEIKELEAQLKNTEPAADRINEELKRL 471 (712)
T ss_pred HHHHHHHHHHHhhhHHHHHHHHHHHHHh
Confidence 7777777777665555544444444444
No 152
>PF14915 CCDC144C: CCDC144C protein coiled-coil region
Probab=69.33 E-value=2e+02 Score=32.31 Aligned_cols=93 Identities=28% Similarity=0.359 Sum_probs=64.6
Q ss_pred HHhhccCchhhHHHHHHHHHhhhHHHHhhhhHHHHHHHHHHHHHHHHHHHhhhhhhhhHHHH-HHHHhhhhh---hhhhh
Q 003570 268 LAKERNKDKEVDMLKQKIRDQGDEIQFFKKHAEDLEIYIKQLTEDCQVLEQENQCLTSKLEK-IQQQESMKS---RECIE 343 (810)
Q Consensus 268 Lvke~~~~~E~~~LkqKI~DL~~Eie~ykkerEeLe~~ieQL~~D~E~LkqEN~~ls~kLEq-~q~Qeql~~---~EcS~ 343 (810)
..|+...-.++-.+++|..||-..|.. --|.|..-|-|-.....+|+-||--|.++|+. -|-.+.|.. .=||.
T Consensus 23 qekE~ky~ediei~Kekn~~Lqk~lKL---neE~ltkTi~qy~~QLn~L~aENt~L~SkLe~EKq~kerLEtEiES~rsR 99 (305)
T PF14915_consen 23 QEKEKKYLEDIEILKEKNDDLQKSLKL---NEETLTKTIFQYNGQLNVLKAENTMLNSKLEKEKQNKERLETEIESYRSR 99 (305)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhh---hHHHHHHHHHHHhhhHHHHHHHHHHHhHHHHHhHHHHHHHHHHHHHHHHH
Confidence 455555667788888888888776654 45678888888999999999999999999964 233333333 34566
Q ss_pred hHhhHHHHH-HHHHHHHHHHH
Q 003570 344 SLATIKELE-SQSERLEDKIK 363 (810)
Q Consensus 344 ~~~~i~eLe-~qve~LE~eLk 363 (810)
+-++|.+.+ +|...-.-+|-
T Consensus 100 LaaAi~d~dqsq~skrdlela 120 (305)
T PF14915_consen 100 LAAAIQDHDQSQTSKRDLELA 120 (305)
T ss_pred HHHHHhhHHHHHhhHHHHHHH
Confidence 677777776 45554444443
No 153
>PF05911 DUF869: Plant protein of unknown function (DUF869); InterPro: IPR008587 This family consists of a number of sequences found in plants. The function of this family is unknown.
Probab=67.83 E-value=3.2e+02 Score=34.09 Aligned_cols=132 Identities=23% Similarity=0.254 Sum_probs=71.2
Q ss_pred HHHHHHHHHhhhHHHHhhhhHHHHHHHHHHHHHHHHHHHhhhhhhhhHHHHHHHHhhhhhhhhhhhHhhHHHHHHHHHHH
Q 003570 279 DMLKQKIRDQGDEIQFFKKHAEDLEIYIKQLTEDCQVLEQENQCLTSKLEKIQQQESMKSRECIESLATIKELESQSERL 358 (810)
Q Consensus 279 ~~LkqKI~DL~~Eie~ykkerEeLe~~ieQL~~D~E~LkqEN~~ls~kLEq~q~Qeql~~~EcS~~~~~i~eLe~qve~L 358 (810)
..++++|..|..+++.+++-+.-++.+++-+..-|+.|.---.++ .+-+..|...|..|
T Consensus 627 ~E~E~~L~eLq~eL~~~keS~s~~E~ql~~~~e~~e~le~~~~~~---------------------e~E~~~l~~Ki~~L 685 (769)
T PF05911_consen 627 KESEQKLEELQSELESAKESNSLAETQLKAMKESYESLETRLKDL---------------------EAEAEELQSKISSL 685 (769)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHH---------------------HHHHHHHHHHHHHH
Confidence 334445555555555555555555555554444444443311111 12344556677777
Q ss_pred HHHHHHHhHHHhHhhHhHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHhhhHHHHHHHHHHHHHHHHHhhhhhhhHHHH--
Q 003570 359 EDKIKQQSEEYSESLISINELECQVKELKRELDKQAQEFEDDIDAVTHAKTEQEQRAIRAEEELRKTRWKNTVTAERL-- 436 (810)
Q Consensus 359 E~eLk~q~~efSesL~tI~eLE~qv~sLeeEl~~Qaq~fe~Dldam~~~k~EQEqRAi~AEeaLrKtR~~na~taErL-- 436 (810)
|.+|..=+..+.+.+..-..|+.++.+...+-.-+-.. -+.-=.++.|.=|.+|++|
T Consensus 686 e~Ele~er~~~~e~~~kc~~Le~el~r~~~~~~~~~~~---------------------~~~~k~kqe~EiaaAA~KLAE 744 (769)
T PF05911_consen 686 EEELEKERALSEELEAKCRELEEELERMKKEESLQQLA---------------------NEDKKIKQEKEIAAAAEKLAE 744 (769)
T ss_pred HHHHHHHHhcchhhhhHHHHHHHHHHhhhcccchhhcc---------------------ccccccchHHHHHHHHHHHHH
Confidence 88777777766666666666666666554332211111 1112235667777788777
Q ss_pred -HHHHHHHHHHhhhhhh
Q 003570 437 -QDEFRRLSVDMASKFD 452 (810)
Q Consensus 437 -QeEf~~LS~qmsSt~e 452 (810)
|+=+-.|+.|.-+.-.
T Consensus 745 CQeTI~sLGkQLksLa~ 761 (769)
T PF05911_consen 745 CQETIASLGKQLKSLAT 761 (769)
T ss_pred HHHHHHHHHHHHHhcCC
Confidence 7777888888766543
No 154
>KOG0239 consensus Kinesin (KAR3 subfamily) [Cytoskeleton]
Probab=67.72 E-value=1.7e+02 Score=35.73 Aligned_cols=74 Identities=22% Similarity=0.332 Sum_probs=35.8
Q ss_pred HHHHhhHHHHHHHHHHhHHHHhhhhhhhhccHHHHhHHHhhHHHHHHHHHHhhhhchhhhhHHhhhHHHHHHhHHHHHHH
Q 003570 466 NEQRMQKAHLEEMLQKANDELSLIKDQNGVKLQELSDQLEQKDKQIQKMYLELDHSSSQLIDEHKSEAQKHEALSTEIHM 545 (810)
Q Consensus 466 seLR~qk~~LEemLqk~neeL~~i~dq~e~kl~eL~~qld~k~k~ie~m~~Ele~kS~qle~~kk~~ee~~~a~s~EI~~ 545 (810)
..|+.....|...+..++.........+..-+.....+ ..+|.+.-..|.... -+......+-.+|+.
T Consensus 244 ~~l~~~l~~l~~~~~~l~~~~~~~~~~~~~~~~~~~~~-----------~~~L~~~~~~l~~~~-~e~~~r~kL~N~i~e 311 (670)
T KOG0239|consen 244 QALQQELEELKAELKELNDQVSLLTREVQEALKESNTL-----------QSDLESLEENLVEKK-KEKEERRKLHNEILE 311 (670)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-----------HHHHHHHHHHHHHHH-HHHHHHHHHHHHHHH
Confidence 34444444444444445444444443333333333332 223333344444444 455566667777777
Q ss_pred HHHHHH
Q 003570 546 LRTEIE 551 (810)
Q Consensus 546 Lk~eie 551 (810)
||.-|.
T Consensus 312 LkGnIR 317 (670)
T KOG0239|consen 312 LKGNIR 317 (670)
T ss_pred hhcCce
Confidence 777664
No 155
>PF05266 DUF724: Protein of unknown function (DUF724); InterPro: IPR007930 This family contains several uncharacterised proteins found exclusively in Arabidopsis thaliana.
Probab=67.08 E-value=33 Score=35.34 Aligned_cols=65 Identities=15% Similarity=0.217 Sum_probs=47.4
Q ss_pred hhhhhhhhhHHHHHHHHHHHHHHHHHHHHhhhccCchhHHHHhhHHHHHHHHHHHHHHHHhhhhH
Q 003570 584 QKWNRERDDLEKKFASAKQEAAKAHEELISMRSLKGENEMLIGNLQAEVENLKVQQNKLQNSLIE 648 (810)
Q Consensus 584 q~~~~er~el~~~~a~~kkeae~~~~EL~~m~~~kdEkE~~i~~LqsE~e~lk~Q~~~LK~sL~~ 648 (810)
.....+...++..|+-+....-.++.+...|+..|..+..-|..|++++..+...+.+.++.+..
T Consensus 120 ~~~~~~~~~~e~~i~~Le~ki~el~~~~~~~~~~ke~~~~ei~~lks~~~~l~~~~~~~e~~F~~ 184 (190)
T PF05266_consen 120 EEKEAELKELESEIKELEMKILELQRQAAKLKEKKEAKDKEISRLKSEAEALKEEIENAELEFQS 184 (190)
T ss_pred HHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33345556666666666666666666667777788888888888888888888888888877653
No 156
>PF13870 DUF4201: Domain of unknown function (DUF4201)
Probab=66.82 E-value=1.4e+02 Score=29.62 Aligned_cols=66 Identities=17% Similarity=0.291 Sum_probs=43.9
Q ss_pred HHHHHHHHHhhHHHHHHHHHHhHHHHhhhhhhhhccHHHHhHHHhhHHHHHH--HHHHhhhhchhhhhHHhhh
Q 003570 461 AMTEANEQRMQKAHLEEMLQKANDELSLIKDQNGVKLQELSDQLEQKDKQIQ--KMYLELDHSSSQLIDEHKS 531 (810)
Q Consensus 461 A~~EaseLR~qk~~LEemLqk~neeL~~i~dq~e~kl~eL~~qld~k~k~ie--~m~~Ele~kS~qle~~kk~ 531 (810)
.-++.+.+|..+..+-.-+.++...|+...+ +.+-...+||-.-+|+ ++.-.|+.+..+|..++..
T Consensus 4 k~~~i~~~Rl~~~~lk~~l~k~~~ql~~ke~-----lge~L~~iDFeqLkien~~l~~kIeERn~eL~~Lk~~ 71 (177)
T PF13870_consen 4 KRNEISKLRLKNITLKHQLAKLEEQLRQKEE-----LGEGLHLIDFEQLKIENQQLNEKIEERNKELLKLKKK 71 (177)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-----hcCcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3468899999999999999999988887333 2233455666555443 4555566666666655543
No 157
>KOG4460 consensus Nuclear pore complex, Nup88/rNup84 component [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=66.49 E-value=1.6e+02 Score=35.53 Aligned_cols=136 Identities=17% Similarity=0.272 Sum_probs=98.4
Q ss_pred hhHHHHHHHHHhhhHHHHhhhhHHHHHHHHHHHHHHHHHHHhhhhhhhhHHHHHHHHhhhhhhhhhhhHhhHHHHHHHHH
Q 003570 277 EVDMLKQKIRDQGDEIQFFKKHAEDLEIYIKQLTEDCQVLEQENQCLTSKLEKIQQQESMKSRECIESLATIKELESQSE 356 (810)
Q Consensus 277 E~~~LkqKI~DL~~Eie~ykkerEeLe~~ieQL~~D~E~LkqEN~~ls~kLEq~q~Qeql~~~EcS~~~~~i~eLe~qve 356 (810)
.+..|+.++.+++.+|..++.+|+.++.--.-|+.-|+..+. .-+
T Consensus 589 H~~~l~~~k~~QlQ~l~~~~eer~~i~e~a~~La~R~eea~e-----------------------------------~qe 633 (741)
T KOG4460|consen 589 HVKLLCDQKKKQLQDLSYCREERKSLREMAERLADRYEEAKE-----------------------------------KQE 633 (741)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-----------------------------------hHH
Confidence 556788888888888888888888877776777766665432 223
Q ss_pred HHHHHHHHHhHHHhHhhHhHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHhhhHHHHHHHHHHHHHHHH-HhhhhhhhHHH
Q 003570 357 RLEDKIKQQSEEYSESLISINELECQVKELKRELDKQAQEFEDDIDAVTHAKTEQEQRAIRAEEELRK-TRWKNTVTAER 435 (810)
Q Consensus 357 ~LE~eLk~q~~efSesL~tI~eLE~qv~sLeeEl~~Qaq~fe~Dldam~~~k~EQEqRAi~AEeaLrK-tR~~na~taEr 435 (810)
.|++.++.+...|-..+.-..-.|...++=-.-+..+.+.+.+-|++++.-...|.+-.-+.-+||.| +|-..+.---.
T Consensus 634 ~L~~~~~~L~~~~~~~lp~l~~AErdFk~Elq~~~~~~~~L~~~iET~~~~~~KQ~~H~~~v~~al~K~~Y~l~~~Q~~~ 713 (741)
T KOG4460|consen 634 DLMNRMKKLLHSFHSELPVLSDAERDFKKELQLIPDQLRHLGNAIETVTMKKDKQQQHMEKVLSALPKPTYILSAYQRKC 713 (741)
T ss_pred HHHHHHHHHHhcccccCCcchhHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccCCcccccHHHHHH
Confidence 45777777777777777777777777766667788999999999999998888888877777778765 55555555566
Q ss_pred HHHHHHHHHHHh
Q 003570 436 LQDEFRRLSVDM 447 (810)
Q Consensus 436 LQeEf~~LS~qm 447 (810)
+|.=+..|+...
T Consensus 714 iqsiL~~L~~~i 725 (741)
T KOG4460|consen 714 IQSILKELGEHI 725 (741)
T ss_pred HHHHHHHHHHHH
Confidence 676666665543
No 158
>KOG0962 consensus DNA repair protein RAD50, ABC-type ATPase/SMC superfamily [Replication, recombination and repair]
Probab=65.95 E-value=4.3e+02 Score=34.90 Aligned_cols=46 Identities=28% Similarity=0.353 Sum_probs=33.9
Q ss_pred HHHHHHHHhHhHHHHHHHHHhhhccccccccccccchhhhHHHHhhhh
Q 003570 758 EVSLLKEKNKRMETELKEMQERYSEISLKFAEVEGERQQLVMTVRNLK 805 (810)
Q Consensus 758 e~~~lkern~~me~elkem~~ryseisl~faevegerqqlvm~~rnlk 805 (810)
.+-.|+.+..-.+.|+...-..|.++- |+.|..+++.|---..++.
T Consensus 1009 ~~~~l~~q~~e~~re~~~ld~Qi~~~~--~~~~~ee~~~L~~~~~~l~ 1054 (1294)
T KOG0962|consen 1009 TLRNLERKLKELERELSELDKQILEAD--IKSVKEERVKLEEEREKLS 1054 (1294)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhH--HHHHHHHHHHHHHHHHHhh
Confidence 355666777777888888888888876 8888888887776665554
No 159
>KOG0249 consensus LAR-interacting protein and related proteins [General function prediction only]
Probab=65.70 E-value=2.6e+02 Score=34.87 Aligned_cols=192 Identities=20% Similarity=0.276 Sum_probs=105.2
Q ss_pred HHHhhhhhhhhHHHHHHHHHHHHHHHhhHHHHHHHHHHhHHHHhhhhhhhhccHHHHhHHHhhHHHHHHHHHH-----hh
Q 003570 444 SVDMASKFDENEKLAMKAMTEANEQRMQKAHLEEMLQKANDELSLIKDQNGVKLQELSDQLEQKDKQIQKMYL-----EL 518 (810)
Q Consensus 444 S~qmsSt~eeNEklt~kA~~EaseLR~qk~~LEemLqk~neeL~~i~dq~e~kl~eL~~qld~k~k~ie~m~~-----El 518 (810)
+.-|--.+..-|+-...|..|.---+--+.+||+.|-.-..+++. ++-++-.|+.++.+-..++.+-.- |+
T Consensus 65 k~d~E~ritt~e~rflnaqre~t~~~d~ndklE~~Lankda~lrq----~eekn~slqerLelaE~~l~qs~rae~lpev 140 (916)
T KOG0249|consen 65 KEDMEERITTLEKRFLNAQRESTSIHDLNDKLENELANKDADLRQ----NEEKNRSLQERLELAEPKLQQSLRAETLPEV 140 (916)
T ss_pred hcccccccchHHHHHHhccCCCCCcccchHHHHHHHhCcchhhch----hHHhhhhhhHHHHHhhHhhHhHHhhhhhhhh
Confidence 344555666667777777777777777788888888888778877 666777777777776666655432 11
Q ss_pred hhchhhhhHH-hhh------HHHHHHhHHHHHHHHHHHHHHHHHhhhhhhhcccccCCCCCCcccchhhHHHhhhhhhhh
Q 003570 519 DHSSSQLIDE-HKS------EAQKHEALSTEIHMLRTEIEKLRKEQYNLSEHGKRRDDNKPKVSTGETDMLIQKWNRERD 591 (810)
Q Consensus 519 e~kS~qle~~-kk~------~ee~~~a~s~EI~~Lk~eie~L~~e~~~l~e~~~~~d~e~~k~s~~e~~~~lq~~~~er~ 591 (810)
+.+-.|--.. -++ .++...-+-.+++.+.+++.+++.-. .| +.++..-+.-.-
T Consensus 141 eael~qr~~al~~aee~~~~~eer~~kl~~~~qe~naeL~rarqre-------------em--neeh~~rlsdtv----- 200 (916)
T KOG0249|consen 141 EAELAQRNAALTKAEEHSGNIEERTRKLEEQLEELNAELQRARQRE-------------KM--NEEHNKRLSDTV----- 200 (916)
T ss_pred HHHHHHHHHHHHHHHHhhccHHHHHHHHHHHHHHHHHHHHHHHHHH-------------Hh--hhhhcccccccc-----
Confidence 1111111111 111 12223333344444444443332110 00 001111110000
Q ss_pred hHHHHHHHHHHHHHHHHHHHHhhhccCchhHHHHhhHHHHHHHHHHHHHHHHhhhhHHHHHhhHHHHHHHHHHHHHHhhH
Q 003570 592 DLEKKFASAKQEAAKAHEELISMRSLKGENEMLIGNLQAEVENLKVQQNKLQNSLIEEKLEKDNLAKQVFQLKDELQKKK 671 (810)
Q Consensus 592 el~~~~a~~kkeae~~~~EL~~m~~~kdEkE~~i~~LqsE~e~lk~Q~~~LK~sL~~ee~EKe~l~kQv~qLk~eL~KKe 671 (810)
..-+++.++|--.+++.. ..|-.++++++.|+..+.|-=-.=-..+|.|+.+|-||+.-...++
T Consensus 201 --dErlqlhlkermaAle~k--------------n~L~~e~~s~kk~l~~~~~~k~rl~~d~E~Lr~e~~qL~~~~~~~~ 264 (916)
T KOG0249|consen 201 --DERLQLHLKERMAALEDK--------------NRLEQELESVKKQLEEMRHDKDKLRTDIEDLRGELDQLRRSSLEKE 264 (916)
T ss_pred --HHHHHHHHHHHHHHHHHH--------------HHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHhhh
Confidence 034456666665555543 3466788899999988877544445567888888888886555555
Q ss_pred HHHH
Q 003570 672 EEIN 675 (810)
Q Consensus 672 ~~~~ 675 (810)
..+.
T Consensus 265 ~~mr 268 (916)
T KOG0249|consen 265 QELR 268 (916)
T ss_pred hhhc
Confidence 4443
No 160
>KOG0963 consensus Transcription factor/CCAAT displacement protein CDP1 [Transcription]
Probab=65.64 E-value=3.2e+02 Score=33.37 Aligned_cols=48 Identities=29% Similarity=0.383 Sum_probs=29.8
Q ss_pred hhHHHHHHHHHHhHHHHhhhhhhhhccHHHHhHHHhhHHHHHHHHHHhhhh
Q 003570 470 MQKAHLEEMLQKANDELSLIKDQNGVKLQELSDQLEQKDKQIQKMYLELDH 520 (810)
Q Consensus 470 ~qk~~LEemLqk~neeL~~i~dq~e~kl~eL~~qld~k~k~ie~m~~Ele~ 520 (810)
..+..|...+.+||...+.-+- --+..+.-.+++|...|.+++.+++.
T Consensus 256 ~e~e~L~~ql~~~N~~~~~~~~---~~i~~~~~~L~~kd~~i~~L~~di~~ 303 (629)
T KOG0963|consen 256 REVEQLREQLAKANSSKKLAKI---DDIDALGSVLNQKDSEIAQLSNDIER 303 (629)
T ss_pred HHHHHHHHHHHhhhhhhhhccC---CchHHHHHHHhHHHHHHHHHHHHHHH
Confidence 3344555567777777666321 23455566677788888888666543
No 161
>PF04949 Transcrip_act: Transcriptional activator; InterPro: IPR007033 Golgins are a family of coiled-coil proteins associated with the Golgi apparatus necessary for tethering events in membrane fusion and as structural supports for Golgi cisternae []. This entry represents proteins annotated as RAB6-interacting golgins.
Probab=65.64 E-value=73 Score=32.60 Aligned_cols=103 Identities=24% Similarity=0.289 Sum_probs=67.6
Q ss_pred HHHHHHHHHHHHHHHHhhhhhhhh-hhhhhhhhhhh----hhHHHHHHHHhhccCchhhHHHHHHHHHhhhHHHHhhhhH
Q 003570 225 AELILAVKDLNEMLEQKNMEISSL-SSKLEESKLVR----EDQLALEALAKERNKDKEVDMLKQKIRDQGDEIQFFKKHA 299 (810)
Q Consensus 225 sELilAVqDLeeMLEqKn~EIs~l-s~~~~e~~~~~----edq~ale~Lvke~~~~~E~~~LkqKI~DL~~Eie~ykker 299 (810)
.--+++.+-=|++||.+++|+-+- ...+--+.+.. .-..+|+.++.-. -+|+.+++.||.-++.++.-...-+
T Consensus 30 ~sals~f~AkEeeIErkKmeVrekVq~~LgrveEetkrLa~ireeLE~l~dP~--RkEv~~vRkkID~vNreLkpl~~~c 107 (159)
T PF04949_consen 30 RSALSAFRAKEEEIERKKMEVREKVQAQLGRVEEETKRLAEIREELEVLADPM--RKEVEMVRKKIDSVNRELKPLGQSC 107 (159)
T ss_pred HHHHHHHHhHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHhhccch--HHHHHHHHHHHHHHHHHhhHHHHHH
Confidence 345788999999999999999872 11111111111 1122333332211 3699999999999999999888777
Q ss_pred HHHHHHHHHHHHHHHHHHhhhhhhhhHHHH
Q 003570 300 EDLEIYIKQLTEDCQVLEQENQCLTSKLEK 329 (810)
Q Consensus 300 EeLe~~ieQL~~D~E~LkqEN~~ls~kLEq 329 (810)
-.-+.-+.+.-.-|...-++...|..+|=.
T Consensus 108 qKKEkEykealea~nEknkeK~~Lv~~L~e 137 (159)
T PF04949_consen 108 QKKEKEYKEALEAFNEKNKEKAQLVTRLME 137 (159)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 777777777777777777776666666544
No 162
>PF00769 ERM: Ezrin/radixin/moesin family; InterPro: IPR011259 The ERM family consists of three closely-related proteins, ezrin, radixin and moesin []. Ezrin was first identified as a constituent of microvilli [], radixin as a barbed, end-capping actin-modulating protein from isolated junctional fractions [], and moesin as a heparin binding protein []. A tumour suppressor molecule responsible for neurofibromatosis type 2 (NF2) is highly similar to ERM proteins and has been designated merlin (moesin-ezrin-radixin-like protein). ERM molecules contain 3 domains, an N-terminal globular domain; an extended alpha-helical domain; and a charged C-terminal domain []. Ezrin, radixin and merlin also contain a polyproline region between the helical and C-terminal domains. The N-terminal domain is highly conserved, and is also found in merlin, band 4.1 proteins and members of the band 4.1 superfamily. ERM proteins crosslink actin filaments with plasma membranes. They co-localise with CD44 at actin filament-plasma membrane interaction sites, associating with CD44 via their N-terminal domains and with actin filaments via their C-terminal domains [].; GO: 0008092 cytoskeletal protein binding, 0005737 cytoplasm, 0019898 extrinsic to membrane; PDB: 2I1J_A 2I1K_A 1E5W_A 1EF1_C.
Probab=65.38 E-value=1.9e+02 Score=30.73 Aligned_cols=116 Identities=28% Similarity=0.379 Sum_probs=72.4
Q ss_pred HHHHHHHHHHHHHHHHHhHHHhHhhHhHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHhhhHHHHHHHHHHHHHHHHHhhh
Q 003570 349 KELESQSERLEDKIKQQSEEYSESLISINELECQVKELKRELDKQAQEFEDDIDAVTHAKTEQEQRAIRAEEELRKTRWK 428 (810)
Q Consensus 349 ~eLe~qve~LE~eLk~q~~efSesL~tI~eLE~qv~sLeeEl~~Qaq~fe~Dldam~~~k~EQEqRAi~AEeaLrKtR~~ 428 (810)
.+|+.++..++.+.+.-......+--+|..|+.+.+.++.+- ...++++..|+++..+.+..
T Consensus 8 ~Ele~rL~q~eee~~~a~~~L~e~e~~a~~Leek~k~aeeea------------------~~Le~k~~eaee~~~rL~~~ 69 (246)
T PF00769_consen 8 QELEERLRQMEEEMRRAQEALEESEETAEELEEKLKQAEEEA------------------EELEQKRQEAEEEKQRLEEE 69 (246)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH------------------HHHHHHHHHHHHHHHHHHH-
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH------------------HHHHHHHHHHHHHHHHHHHH
Confidence 356667777777777777777777777777777766655432 23344444444444444444
Q ss_pred hhhhH---HHHHHHHHHHHHHhhhhhhhhHHHHHHHHHHHHHHHhhHHHHHHHHHHhHHHH
Q 003570 429 NTVTA---ERLQDEFRRLSVDMASKFDENEKLAMKAMTEANEQRMQKAHLEEMLQKANDEL 486 (810)
Q Consensus 429 na~ta---ErLQeEf~~LS~qmsSt~eeNEklt~kA~~EaseLR~qk~~LEemLqk~neeL 486 (810)
..-+. ++|..++..+...+.....+.++. -.|+..|+.+.....+.+.++.++|
T Consensus 70 ~~~~~eEk~~Le~e~~e~~~~i~~l~ee~~~k----e~Ea~~lq~el~~ar~~~~~ak~~L 126 (246)
T PF00769_consen 70 AEMQEEEKEQLEQELREAEAEIARLEEESERK----EEEAEELQEELEEAREDEEEAKEEL 126 (246)
T ss_dssp -----------HHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33333 477778888877777777766654 3577888888888888888888887
No 163
>PRK10884 SH3 domain-containing protein; Provisional
Probab=65.24 E-value=50 Score=34.46 Aligned_cols=46 Identities=20% Similarity=0.299 Sum_probs=27.5
Q ss_pred HHHHHhhHHHHHHHHHHhHHHHhhhhhhhhccHHHHhHHHhhHHHH
Q 003570 465 ANEQRMQKAHLEEMLQKANDELSLIKDQNGVKLQELSDQLEQKDKQ 510 (810)
Q Consensus 465 aseLR~qk~~LEemLqk~neeL~~i~dq~e~kl~eL~~qld~k~k~ 510 (810)
..-+|.+...|+..|.++..+|..+..++.....++.+.+..-..+
T Consensus 88 ~p~~~~rlp~le~el~~l~~~l~~~~~~~~~~~~~l~~~~~~~~~~ 133 (206)
T PRK10884 88 TPSLRTRVPDLENQVKTLTDKLNNIDNTWNQRTAEMQQKVAQSDSV 133 (206)
T ss_pred CccHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHH
Confidence 3445666777777777777777776665554444444444443333
No 164
>PF10146 zf-C4H2: Zinc finger-containing protein ; InterPro: IPR018482 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule. Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. This entry represents a family of proteins which appears to have a highly conserved zinc finger domain at the C-terminal end, described as -C-X2-CH-X3-H-X5-C-X2-C-. The structure is predicted to contain a coiled coil. Members of this family are annotated as being tumour-associated antigen HCA127 in humans, but this could not be confirmed.
Probab=64.60 E-value=1.5e+02 Score=31.66 Aligned_cols=48 Identities=29% Similarity=0.362 Sum_probs=28.3
Q ss_pred hhhhhhhhhHHHHHHHHHHHHHHHHHHHHhhhccCchhHHHHhhHHHHHHHHHHHHHHHHhh
Q 003570 584 QKWNRERDDLEKKFASAKQEAAKAHEELISMRSLKGENEMLIGNLQAEVENLKVQQNKLQNS 645 (810)
Q Consensus 584 q~~~~er~el~~~~a~~kkeae~~~~EL~~m~~~kdEkE~~i~~LqsE~e~lk~Q~~~LK~s 645 (810)
+.-+.-|+.|+..|..++.+-.+..+ .|..+.-|+.-|+.+.|.+..+
T Consensus 56 rqI~~DIn~lE~iIkqa~~er~~~~~--------------~i~r~~eey~~Lk~~in~~R~e 103 (230)
T PF10146_consen 56 RQINQDINTLENIIKQAESERNKRQE--------------KIQRLYEEYKPLKDEINELRKE 103 (230)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH--------------HHHHHHHHHHHHHHHHHHHHHH
Confidence 34456667777777777766644443 3344455556666666666555
No 165
>PRK12704 phosphodiesterase; Provisional
Probab=63.03 E-value=3.1e+02 Score=32.33 Aligned_cols=30 Identities=27% Similarity=0.441 Sum_probs=15.0
Q ss_pred cHHHHhHHHhhHHHHHHHHHHhhhhchhhh
Q 003570 496 KLQELSDQLEQKDKQIQKMYLELDHSSSQL 525 (810)
Q Consensus 496 kl~eL~~qld~k~k~ie~m~~Ele~kS~ql 525 (810)
.+.+.-..|+.+...+++-...|+.+...|
T Consensus 83 ~L~qrE~rL~~Ree~Le~r~e~Lekke~eL 112 (520)
T PRK12704 83 ELQKLEKRLLQKEENLDRKLELLEKREEEL 112 (520)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344444445555555555555555555555
No 166
>PF09787 Golgin_A5: Golgin subfamily A member 5; InterPro: IPR019177 This entry represents a family of proteins involved in maintaining Golgi structure. They stimulate the formation of Golgi stacks and ribbons, and are involved in intra-Golgi retrograde transport. Two main interactions have been characterised: one with RAB1A that has been activated by GTP-binding and another with isoform CASP of CUTL1 [].
Probab=62.19 E-value=3.1e+02 Score=31.97 Aligned_cols=41 Identities=29% Similarity=0.418 Sum_probs=23.8
Q ss_pred HHHHHHHHHHHhhhhhhhhHHHHHHHHHHHHHHHhhHHHHHHHHH
Q 003570 436 LQDEFRRLSVDMASKFDENEKLAMKAMTEANEQRMQKAHLEEMLQ 480 (810)
Q Consensus 436 LQeEf~~LS~qmsSt~eeNEklt~kA~~EaseLR~qk~~LEemLq 480 (810)
+..=|..|+.-+..+...-|.++ +|=+.|+.|.-.|+.-++
T Consensus 390 lE~rl~~lt~~Li~KQ~~lE~l~----~ek~al~lqlErl~~~l~ 430 (511)
T PF09787_consen 390 LESRLTQLTESLIQKQTQLESLG----SEKNALRLQLERLETQLK 430 (511)
T ss_pred HHHHHhhccHHHHHHHHHHHHHH----hhhhhccccHHHHHHHHH
Confidence 34444555555555555555444 466667777777776666
No 167
>PF13870 DUF4201: Domain of unknown function (DUF4201)
Probab=62.13 E-value=74 Score=31.53 Aligned_cols=126 Identities=25% Similarity=0.428 Sum_probs=80.9
Q ss_pred HHHHHhhhhhhhHHHHHHHHHHHHHHhhhhhhhhHHHHHHHHHHHHHHHhhHHHHHHHHHHhHHHHhhhhhhhhccHHHH
Q 003570 421 ELRKTRWKNTVTAERLQDEFRRLSVDMASKFDENEKLAMKAMTEANEQRMQKAHLEEMLQKANDELSLIKDQNGVKLQEL 500 (810)
Q Consensus 421 aLrKtR~~na~taErLQeEf~~LS~qmsSt~eeNEklt~kA~~EaseLR~qk~~LEemLqk~neeL~~i~dq~e~kl~eL 500 (810)
.+-+.|++|.. |+--+..+..++..+=+-.|-+.+ ..-..|..+|..|-+.+..=|.+|--.+.-+..-++.|
T Consensus 7 ~i~~~Rl~~~~----lk~~l~k~~~ql~~ke~lge~L~~---iDFeqLkien~~l~~kIeERn~eL~~Lk~~~~~~v~~L 79 (177)
T PF13870_consen 7 EISKLRLKNIT----LKHQLAKLEEQLRQKEELGEGLHL---IDFEQLKIENQQLNEKIEERNKELLKLKKKIGKTVQIL 79 (177)
T ss_pred HHHHHHHHHHH----HHHHHHHHHHHHHHHHHhcCcccH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 56667777664 444455555555555544554443 34467888899999999888999888888777766665
Q ss_pred ---hHHHhhHHHHHHHHHHhhhhchhhhhHHhhhHHHHHHhHHHHHHHHHHHHHHHHHhhhhhhhcc
Q 003570 501 ---SDQLEQKDKQIQKMYLELDHSSSQLIDEHKSEAQKHEALSTEIHMLRTEIEKLRKEQYNLSEHG 564 (810)
Q Consensus 501 ---~~qld~k~k~ie~m~~Ele~kS~qle~~kk~~ee~~~a~s~EI~~Lk~eie~L~~e~~~l~e~~ 564 (810)
...+.+....+..|-.+|.++-..+ ..+..++..++.+..++...+..|..+.
T Consensus 80 ~h~keKl~~~~~~~~~l~~~l~~~~~~~-----------~~~r~~l~~~k~~r~k~~~~~~~l~~~~ 135 (177)
T PF13870_consen 80 THVKEKLHFLSEELERLKQELKDREEEL-----------AKLREELYRVKKERDKLRKQNKKLRQQG 135 (177)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH-----------HHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 4556666666666666665554444 5556666666666666666666654443
No 168
>KOG4673 consensus Transcription factor TMF, TATA element modulatory factor [Transcription]
Probab=61.97 E-value=4e+02 Score=33.27 Aligned_cols=305 Identities=17% Similarity=0.160 Sum_probs=153.2
Q ss_pred HHHHHHHHHHHHhHHHhHhhHhHHHHHHHHHH---HHHHHHHHHHHHHhh---HHHHHhhhHHHHHHHHHHHHHHHHHhh
Q 003570 354 QSERLEDKIKQQSEEYSESLISINELECQVKE---LKRELDKQAQEFEDD---IDAVTHAKTEQEQRAIRAEEELRKTRW 427 (810)
Q Consensus 354 qve~LE~eLk~q~~efSesL~tI~eLE~qv~s---LeeEl~~Qaq~fe~D---ldam~~~k~EQEqRAi~AEeaLrKtR~ 427 (810)
+|..|..+=.++++..---..-|+.|-++++. |.+-..+++-.+.++ |..+.++|.+-|+-.+.+ + -
T Consensus 454 ~I~~lm~EGEkLSK~ql~qs~iIkKLRAk~ke~etl~~K~ge~i~~L~sE~~~lk~il~~Kee~Ek~~~E~---I----~ 526 (961)
T KOG4673|consen 454 IINQLMAEGEKLSKKQLAQSAIIKKLRAKIKEAETLEEKKGELITKLQSEENKLKSILRDKEETEKLLQET---I----E 526 (961)
T ss_pred HHHHHHHHHHHhHHHHHHHHHHHHHHHHHhhhhhHHHHHhhhHHHHHHHHHHHHHHHhhhHHHHHHHHHHH---H----H
Confidence 33344444444455444445556666666653 345555555555444 445556666665544332 1 1
Q ss_pred hhhhhHHHHHHHHHHHHHHhhhhhhhhHHHHHHHHHHHHH-HHhhHHHHHHHHHHhHHHHhhhhhhhhccHHHHhHHHhh
Q 003570 428 KNTVTAERLQDEFRRLSVDMASKFDENEKLAMKAMTEANE-QRMQKAHLEEMLQKANDELSLIKDQNGVKLQELSDQLEQ 506 (810)
Q Consensus 428 ~na~taErLQeEf~~LS~qmsSt~eeNEklt~kA~~Ease-LR~qk~~LEemLqk~neeL~~i~dq~e~kl~eL~~qld~ 506 (810)
+-...+.|-.+++..+-+-|... ++.=...-.|+.+|-. |...|+.= .+++|.-..-|--++.+|+..|..
T Consensus 527 k~~ae~~rq~~~~~~sr~~~~~l-e~~~~a~qat~d~a~~Dlqk~nrlk-------Qdear~~~~~lvqqv~dLR~~L~~ 598 (961)
T KOG4673|consen 527 KHQAELTRQKDYYSNSRALAAAL-EAQALAEQATNDEARSDLQKENRLK-------QDEARERESMLVQQVEDLRQTLSK 598 (961)
T ss_pred HHHHHHHHHHHhhhhHHHHHHHH-HHHHHHHHHhhhhhhhhHHHHhhhh-------hhHHHHHHHHHHHHHHHHHHHHHH
Confidence 11122333333343333333221 1111112222222222 22222111 234444444455567777777776
Q ss_pred HHHHH----HHHHHhhhhchhhhhHHhhhHHHHHHhHHHHHHHHHHHHHHHHHhhhh----hhhcccccCCCCCCcccch
Q 003570 507 KDKQI----QKMYLELDHSSSQLIDEHKSEAQKHEALSTEIHMLRTEIEKLRKEQYN----LSEHGKRRDDNKPKVSTGE 578 (810)
Q Consensus 507 k~k~i----e~m~~Ele~kS~qle~~kk~~ee~~~a~s~EI~~Lk~eie~L~~e~~~----l~e~~~~~d~e~~k~s~~e 578 (810)
+..+. ++|--|+.+.-.-|+.+.+.-++....+..=..=|=..|+.|..-.+. |-.. .+.=.+.+-.|.--
T Consensus 599 ~Eq~aarrEd~~R~Ei~~LqrRlqaaE~R~eel~q~v~~TTrPLlRQIE~lQ~tl~~~~tawere-E~~l~~rL~dSQtl 677 (961)
T KOG4673|consen 599 KEQQAARREDMFRGEIEDLQRRLQAAERRCEELIQQVPETTRPLLRQIEALQETLSKAATAWERE-ERSLNERLSDSQTL 677 (961)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccccccHHHHHHHHHHHHHhhhhhHHHHH-HHHHHHhhhhHHHH
Confidence 66554 455667777777777776666666555554444455555554422211 1110 00111111112222
Q ss_pred hhHHHhhhhhhhhhH----------HHHHHHHHHHHHHHHHHHHhhhccCchhHHHHhhHHHHHHHHHHHHHHHHhhhhH
Q 003570 579 TDMLIQKWNRERDDL----------EKKFASAKQEAAKAHEELISMRSLKGENEMLIGNLQAEVENLKVQQNKLQNSLIE 648 (810)
Q Consensus 579 ~~~~lq~~~~er~el----------~~~~a~~kkeae~~~~EL~~m~~~kdEkE~~i~~LqsE~e~lk~Q~~~LK~sL~~ 648 (810)
.-+.++....+..+| ....+++..|+-....-|..=+.--.+.+.-...+|-|+++|+..|+-|-. +..
T Consensus 678 lr~~v~~eqgekqElL~~~~~l~s~~~q~sllraE~~~l~~~le~e~nr~~~~~~e~~~~qeE~~~l~~r~~~le~-e~r 756 (961)
T KOG4673|consen 678 LRINVLEEQGEKQELLSLNFSLPSSPIQLSLLRAEQGQLSKSLEKERNRAAENRQEYLAAQEEADTLEGRANQLEV-EIR 756 (961)
T ss_pred HHHHHHHHhhhHHHHHHHhcCCCcchhHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHH-HHH
Confidence 222233222222222 234567777777666666554444444455567889999999998887754 455
Q ss_pred HHHHhhHHHHHHHHHHHHHHhhHHHHH
Q 003570 649 EKLEKDNLAKQVFQLKDELQKKKEEIN 675 (810)
Q Consensus 649 ee~EKe~l~kQv~qLk~eL~KKe~~~~ 675 (810)
++-+++|-+.|-.-|+.++-+|.-++.
T Consensus 757 ~~k~~~~q~lq~~ll~ve~~~k~~e~~ 783 (961)
T KOG4673|consen 757 ELKRKHKQELQEVLLHVELIQKDLERE 783 (961)
T ss_pred HHHHHHHHHhhHHHHHHHHHHHHhhhC
Confidence 666778888888888888888877664
No 169
>PRK14127 cell division protein GpsB; Provisional
Probab=61.68 E-value=39 Score=32.42 Aligned_cols=73 Identities=16% Similarity=0.277 Sum_probs=43.9
Q ss_pred hHHHHHHHHHHHHHHHHHHHhhhhhhhhHHHHHHHHhhhhhhhhhhhHhhHHHHHHHHHHHHHHH---H---HHhHHHhH
Q 003570 298 HAEDLEIYIKQLTEDCQVLEQENQCLTSKLEKIQQQESMKSRECIESLATIKELESQSERLEDKI---K---QQSEEYSE 371 (810)
Q Consensus 298 erEeLe~~ieQL~~D~E~LkqEN~~ls~kLEq~q~Qeql~~~EcS~~~~~i~eLe~qve~LE~eL---k---~q~~efSe 371 (810)
+.++....+++...||+.|..+|..|.-++...+ ..+.++++++......- . ...--+.+
T Consensus 24 d~~EVD~FLd~V~~dye~l~~e~~~Lk~e~~~l~--------------~~l~e~~~~~~~~~~~~~~~~~~~~~~~tn~D 89 (109)
T PRK14127 24 DQDEVDKFLDDVIKDYEAFQKEIEELQQENARLK--------------AQVDELTKQVSVGASSSSVATTQPSSSATNYD 89 (109)
T ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--------------HHHHHHHHhhccccccccccccCCCCCcchHH
Confidence 4566667788888888888887777665554421 23333444333322111 0 11346778
Q ss_pred hhHhHHHHHHHHH
Q 003570 372 SLISINELECQVK 384 (810)
Q Consensus 372 sL~tI~eLE~qv~ 384 (810)
-|++|+-||..|=
T Consensus 90 iLKRls~LEk~VF 102 (109)
T PRK14127 90 ILKRLSNLEKHVF 102 (109)
T ss_pred HHHHHHHHHHHHh
Confidence 8999999998773
No 170
>PF07106 TBPIP: Tat binding protein 1(TBP-1)-interacting protein (TBPIP); InterPro: IPR010776 This family consists of several eukaryotic TBP-1 interacting protein (TBPIP) sequences. TBP-1 has been demonstrated to interact with the human immunodeficiency virus type 1 (HIV-1) viral protein Tat, then modulate the essential replication process of HIV. In addition, TBP-1 has been shown to be a component of the 26S proteasome, a basic multiprotein complex that degrades ubiquitinated proteins in an ATP-dependent fashion. Human TBPIP interacts with human TBP-1 then modulates the inhibitory action of human TBP-1 on HIV-Tat-mediated transactivation [].
Probab=61.64 E-value=47 Score=32.61 Aligned_cols=66 Identities=24% Similarity=0.293 Sum_probs=45.0
Q ss_pred CcchHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHhhhh--hhHHHHHHhhHHhhhHHHHHHHHhhh
Q 003570 108 SDGSVEKLKNEIAVMMRQVELSELELLSLRKQVAKESKRA--QDQTRQIISLSSERDALTIECEQLRK 173 (810)
Q Consensus 108 sd~~iEkLKsE~~~l~Rq~e~selELQtLRKQi~KESKRg--qdLsrEv~~lk~ERD~Lk~EcEqLks 173 (810)
+++++..|..+|..|..+......+.-.|+.++..=++.- .+|...|..|+.|...|....+.|++
T Consensus 70 s~eel~~ld~ei~~L~~el~~l~~~~k~l~~eL~~L~~~~t~~el~~~i~~l~~e~~~l~~kL~~l~~ 137 (169)
T PF07106_consen 70 SPEELAELDAEIKELREELAELKKEVKSLEAELASLSSEPTNEELREEIEELEEEIEELEEKLEKLRS 137 (169)
T ss_pred CchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 5555555555555555555555555555555554444433 48899999999999999999999998
No 171
>PRK10361 DNA recombination protein RmuC; Provisional
Probab=61.00 E-value=3.4e+02 Score=32.09 Aligned_cols=98 Identities=17% Similarity=0.314 Sum_probs=54.4
Q ss_pred hccHHHHhHHHhhHHHHHHHHHHh-hhhchhhhhHHhhhH-HHHHHhHHHHHHHHHHHHHHHHHhhhhhhhcccccCCCC
Q 003570 494 GVKLQELSDQLEQKDKQIQKMYLE-LDHSSSQLIDEHKSE-AQKHEALSTEIHMLRTEIEKLRKEQYNLSEHGKRRDDNK 571 (810)
Q Consensus 494 e~kl~eL~~qld~k~k~ie~m~~E-le~kS~qle~~kk~~-ee~~~a~s~EI~~Lk~eie~L~~e~~~l~e~~~~~d~e~ 571 (810)
+-|+..|...-...+.+.+.+..+ ++.+|.+|..+-+.. +....-|.+.|..++.+++.+-
T Consensus 98 ~ek~~~l~~~~~~L~~~F~~LA~~ile~k~~~f~~~~~~~l~~ll~Pl~e~l~~f~~~v~~~~----------------- 160 (475)
T PRK10361 98 DDKIRQMINSEQRLSEQFENLANRIFEHSNRRVDEQNRQSLNSLLSPLREQLDGFRRQVQDSF----------------- 160 (475)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHH-----------------
Confidence 334444443333344444444443 466677766544433 4556667777777777775333
Q ss_pred CCcccchhhHHHhhhhhhhhhHHHHHHHHHHHHHHHHHHHHhhh-ccCch
Q 003570 572 PKVSTGETDMLIQKWNRERDDLEKKFASAKQEAAKAHEELISMR-SLKGE 620 (810)
Q Consensus 572 ~k~s~~e~~~~lq~~~~er~el~~~~a~~kkeae~~~~EL~~m~-~~kdE 620 (810)
.....+|..|...|..++.--.+...|-.++. .||..
T Consensus 161 ------------~~~~~~~~~L~~qi~~L~~~n~~i~~ea~nLt~ALkgd 198 (475)
T PRK10361 161 ------------GKEAQERHTLAHEIRNLQQLNAQMAQEAINLTRALKGD 198 (475)
T ss_pred ------------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCC
Confidence 23345667777777777766666666665543 35554
No 172
>PRK00106 hypothetical protein; Provisional
Probab=59.78 E-value=3.7e+02 Score=32.13 Aligned_cols=27 Identities=26% Similarity=0.211 Sum_probs=12.8
Q ss_pred HHHHHHhhhhhhhhHHHHHHHHHHHHH
Q 003570 441 RRLSVDMASKFDENEKLAMKAMTEANE 467 (810)
Q Consensus 441 ~~LS~qmsSt~eeNEklt~kA~~Ease 467 (810)
-.+|..|-|.-+.-|-....|-.+|..
T Consensus 20 ~~~~~~~~~~~~~~~~~~~~A~~~A~~ 46 (535)
T PRK00106 20 VLISIKMKSAKEAAELTLLNAEQEAVN 46 (535)
T ss_pred HHHHHHHhhhHHHHHHHHHHHHHHHHH
Confidence 344555555555544444444444443
No 173
>PRK11020 hypothetical protein; Provisional
Probab=59.65 E-value=17 Score=35.48 Aligned_cols=55 Identities=25% Similarity=0.409 Sum_probs=38.4
Q ss_pred HHHHhHHHhhHHHHHHHHHHhhhhchhhhhHHhhhHHHHHHhHHHHHHHHHHHHHHHHHhhhh-hhhcc
Q 003570 497 LQELSDQLEQKDKQIQKMYLELDHSSSQLIDEHKSEAQKHEALSTEIHMLRTEIEKLRKEQYN-LSEHG 564 (810)
Q Consensus 497 l~eL~~qld~k~k~ie~m~~Ele~kS~qle~~kk~~ee~~~a~s~EI~~Lk~eie~L~~e~~~-l~e~~ 564 (810)
++.|++.||.-...+..+ ..+-+.+++..|..||..|..+|..|+.-+.. ||.++
T Consensus 7 iq~L~drLD~~~~Klaaa-------------~~rgd~~~i~qf~~E~~~l~k~I~~lk~~~~~~lske~ 62 (118)
T PRK11020 7 IKRLSDRLDAIRHKLAAA-------------SLRGDAEKYAQFEKEKATLEAEIARLKEVQSQKLSKEA 62 (118)
T ss_pred HHHHHHHHHHHHHHHHHH-------------HhcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 455566666544443333 34667789999999999999999998866554 66655
No 174
>PF15294 Leu_zip: Leucine zipper
Probab=59.63 E-value=57 Score=35.85 Aligned_cols=26 Identities=35% Similarity=0.405 Sum_probs=18.1
Q ss_pred hhhhhhHHHHHHHHHHHHHHHHHHHH
Q 003570 587 NRERDDLEKKFASAKQEAAKAHEELI 612 (810)
Q Consensus 587 ~~er~el~~~~a~~kkeae~~~~EL~ 612 (810)
......|+.++|-+|.+.++++....
T Consensus 189 ~q~l~dLE~k~a~lK~e~ek~~~d~~ 214 (278)
T PF15294_consen 189 AQDLSDLENKMAALKSELEKALQDKE 214 (278)
T ss_pred ccchhhHHHHHHHHHHHHHHHHHHHH
Confidence 34567788888888877777665544
No 175
>PF00170 bZIP_1: bZIP transcription factor cAMP response element binding (CREB) protein signature fos transforming protein signature jun transcription factor signature; InterPro: IPR011616 The basic-leucine zipper (bZIP) transcription factors [, ] of eukaryotic are proteins that contain a basic region mediating sequence-specific DNA-binding followed by a leucine zipper region (see IPR002158 from INTERPRO) required for dimerization.; GO: 0003700 sequence-specific DNA binding transcription factor activity, 0043565 sequence-specific DNA binding, 0046983 protein dimerization activity, 0006355 regulation of transcription, DNA-dependent; PDB: 2H7H_B 2OQQ_B 1S9K_E 1JNM_A 1JUN_A 1FOS_H 1A02_J 1T2K_C 1CI6_A 1DH3_C ....
Probab=59.48 E-value=28 Score=29.26 Aligned_cols=23 Identities=35% Similarity=0.507 Sum_probs=10.4
Q ss_pred hHHHHHHHHHHHHHHHHHHHhhh
Q 003570 298 HAEDLEIYIKQLTEDCQVLEQEN 320 (810)
Q Consensus 298 erEeLe~~ieQL~~D~E~LkqEN 320 (810)
++..|...+..|...|..|+.+|
T Consensus 41 en~~L~~~~~~L~~~~~~L~~e~ 63 (64)
T PF00170_consen 41 ENEELKKELEQLKKEIQSLKSEN 63 (64)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHhhc
Confidence 33344444444444444444444
No 176
>PF04111 APG6: Autophagy protein Apg6; InterPro: IPR007243 Macroautophagy is a bulk degradation process induced by starvation in eukaryotic cells. In yeast, 15 Apg proteins coordinate the formation of autophagosomes. No molecule involved in autophagy has yet been identified in higher eukaryotes []. The pre-autophagosomal structure contains at least five Apg proteins: Apg1p, Apg2p, Apg5p, Aut7p/Apg8p and Apg16p. It is found in the vacuole []. The C-terminal glycine of Apg12p is conjugated to a lysine residue of Apg5p via an isopeptide bond. During autophagy, cytoplasmic components are enclosed in autophagosomes and delivered to lysosomes/vacuoles. Auotphagy protein 16 (Apg16) has been shown to be bind to Apg5 and is required for the function of the Apg12p-Apg5p conjugate []. Autophagy protein 5 (Apg5) is directly required for the import of aminopeptidase I via the cytoplasm-to-vacuole targeting pathway []. Apg6/Vps30p has two distinct functions in the autophagic process, either associated with the membrane or in a retrieval step of the carboxypeptidase Y sorting pathway [].; GO: 0006914 autophagy; PDB: 3Q8T_A 3VP7_A 4DDP_A.
Probab=59.46 E-value=80 Score=34.61 Aligned_cols=38 Identities=32% Similarity=0.308 Sum_probs=24.4
Q ss_pred HHHHHHHHHHHhhhhHHHHHhhHHHHHHHHHHHHHHhh
Q 003570 633 ENLKVQQNKLQNSLIEEKLEKDNLAKQVFQLKDELQKK 670 (810)
Q Consensus 633 e~lk~Q~~~LK~sL~~ee~EKe~l~kQv~qLk~eL~KK 670 (810)
..+-..++.++.-+..-.-+.+-+..|+......|.+-
T Consensus 95 ~~~~~~~n~~~~~l~~~~~e~~sl~~q~~~~~~~L~~L 132 (314)
T PF04111_consen 95 EEYWREYNELQLELIEFQEERDSLKNQYEYASNQLDRL 132 (314)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34455666666666666666677777777666666553
No 177
>PF06008 Laminin_I: Laminin Domain I; InterPro: IPR009254 Laminins are glycoproteins that are major constituents of the basement membrane of cells. Laminins are trimeric molecules; laminin-1 is an alpha1 beta1 gamma1 trimer. It has been suggested that the domains I and II from laminin A, B1 and B2 may come together to form a triple helical coiled-coil structure []. Binding to cells via a high affinity receptor, laminin is thought to mediate the attachment, migration and organisation of cells into tissues during embryonic development by interacting with other extracellular matrix components.; GO: 0005102 receptor binding, 0030155 regulation of cell adhesion, 0030334 regulation of cell migration, 0045995 regulation of embryonic development, 0005606 laminin-1 complex
Probab=59.41 E-value=2.4e+02 Score=29.74 Aligned_cols=198 Identities=18% Similarity=0.261 Sum_probs=0.0
Q ss_pred hhhHhhHHHHHHHHHHHHHHHHHHhHHHhHhhHhHHHHHHHHHHHHHH---HHHHHHHHHhhHHHHHhhhHHHHHHHHHH
Q 003570 342 IESLATIKELESQSERLEDKIKQQSEEYSESLISINELECQVKELKRE---LDKQAQEFEDDIDAVTHAKTEQEQRAIRA 418 (810)
Q Consensus 342 S~~~~~i~eLe~qve~LE~eLk~q~~efSesL~tI~eLE~qv~sLeeE---l~~Qaq~fe~Dldam~~~k~EQEqRAi~A 418 (810)
+..++.+..|.+.++.+=..|+.....++..-..|..++.++.+|..+ |..|+.....+...+..+=..==+||-..
T Consensus 13 t~~~~~~~~l~~~~e~~~~~L~~~~~~~~~~~~~~~~~e~~l~~L~~d~~~L~~k~~~~~~~~~~l~~~t~~t~~~a~~L 92 (264)
T PF06008_consen 13 TGAWPAPYKLLSSIEDLTNQLRSYRSKLNPQKQQLDPLEKELESLEQDVENLQEKATKVSRKAQQLNNNTERTLQRAQDL 92 (264)
T ss_pred hhhhhhHHHHHHHHHHHHHHHHHHhccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_pred HHHHHHHhhh------------------hhhhHHHHHHHHHHHHHHh---hhhhhhhHHHHHHHHHHHHHH--HhhHH--
Q 003570 419 EEELRKTRWK------------------NTVTAERLQDEFRRLSVDM---ASKFDENEKLAMKAMTEANEQ--RMQKA-- 473 (810)
Q Consensus 419 EeaLrKtR~~------------------na~taErLQeEf~~LS~qm---sSt~eeNEklt~kA~~EaseL--R~qk~-- 473 (810)
...++.++-+ -.....+..+|..++=.+| . |..--..+-..+.+|..| |.++-
T Consensus 93 ~~~i~~l~~~i~~l~~~~~~l~~~~~~~~~~~l~~~l~ea~~mL~emr~r~--f~~~~~~Ae~El~~A~~LL~~v~~~~~ 170 (264)
T PF06008_consen 93 EQFIQNLQDNIQELIEQVESLNENGDQLPSEDLQRALAEAQRMLEEMRKRD--FTPQRQNAEDELKEAEDLLSRVQKWFQ 170 (264)
T ss_pred HHHHHHHHHHHHHHHHHHHHhCcccCCCCHHHHHHHHHHHHHHHHHHHhcc--chhHHHHHHHHHHHHHHHHHHHHHHHh
Q ss_pred ----HHHHHHHHhHHHHhhhhhhhhccHHHHhHHHhh---HHHHHHHHHHhhhhchhhhhHHhhhHHHHHHhHHHHHHH
Q 003570 474 ----HLEEMLQKANDELSLIKDQNGVKLQELSDQLEQ---KDKQIQKMYLELDHSSSQLIDEHKSEAQKHEALSTEIHM 545 (810)
Q Consensus 474 ----~LEemLqk~neeL~~i~dq~e~kl~eL~~qld~---k~k~ie~m~~Ele~kS~qle~~kk~~ee~~~a~s~EI~~ 545 (810)
..+.....+...|.. |..||.+|...|+- ++++-+.+..........+...+..=.+....++.=|.+
T Consensus 171 ~~~~~~~~l~~~i~~~L~~----~~~kL~Dl~~~l~eA~~~~~ea~~ln~~n~~~l~~~~~k~~~l~~~~~~~~~~L~~ 245 (264)
T PF06008_consen 171 KPQQENESLAEAIRDDLND----YNAKLQDLRDLLNEAQNKTREAEDLNRANQKNLEDLEKKKQELSEQQNEVSETLKE 245 (264)
T ss_pred hHHHhhHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
No 178
>PF10046 BLOC1_2: Biogenesis of lysosome-related organelles complex-1 subunit 2 ; InterPro: IPR019269 This entry represents a family of proteins that play a role in cellular proliferation, as well as in the biogenesis of specialised organelles of the endosomal-lysosomal system [].
Probab=59.14 E-value=1.5e+02 Score=27.45 Aligned_cols=18 Identities=33% Similarity=0.458 Sum_probs=9.5
Q ss_pred hhHhhHHHHHHHHHHHHH
Q 003570 343 ESLATIKELESQSERLED 360 (810)
Q Consensus 343 ~~~~~i~eLe~qve~LE~ 360 (810)
+++..|++++.+|..||+
T Consensus 63 ~~l~~Id~Ie~~V~~LE~ 80 (99)
T PF10046_consen 63 PYLQQIDQIEEQVTELEQ 80 (99)
T ss_pred HHHHHHHHHHHHHHHHHH
Confidence 344455555555555554
No 179
>PRK06568 F0F1 ATP synthase subunit B; Validated
Probab=59.01 E-value=2.1e+02 Score=28.94 Aligned_cols=54 Identities=20% Similarity=0.335 Sum_probs=34.0
Q ss_pred HHHHHHHHHHHHHHHhhHHHHHhhhHHHHHHHHHHHHHHHHHhhhhhhhHHHHHHHHHHHHHHhhhhhhh
Q 003570 384 KELKRELDKQAQEFEDDIDAVTHAKTEQEQRAIRAEEELRKTRWKNTVTAERLQDEFRRLSVDMASKFDE 453 (810)
Q Consensus 384 ~sLeeEl~~Qaq~fe~Dldam~~~k~EQEqRAi~AEeaLrKtR~~na~taErLQeEf~~LS~qmsSt~ee 453 (810)
..+..++-.++.....-+-..-+..+++|++. +...|+.++..||++++|+|=-
T Consensus 84 ~~~~~ea~~eA~~ea~r~~~~A~~~Ie~Ek~~----------------Al~elr~eva~Lav~iAsk~~~ 137 (154)
T PRK06568 84 KKIIQEKTKEIEEFLEHKKSDAIQLIQNQKST----------------ASKELQDEFCDEVIKLVSEYFQ 137 (154)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----------------HHHHHHHHHHHHHHHHHHHHHH
Confidence 33444444555554444444444445554444 5667899999999999999853
No 180
>PF12329 TMF_DNA_bd: TATA element modulatory factor 1 DNA binding; InterPro: IPR022092 This is the middle region of a family of TATA element modulatory factor 1 proteins conserved in eukaryotes that contains at its N-terminal section a number of leucine zippers that could potentially form coiled coil structures. The whole proteins bind to the TATA element of some RNA polymerase II promoters and repress their activity. by competing with the binding of TATA binding protein. TMFs are evolutionarily conserved golgins that bind Rab6, a ubiquitous ras-like GTP-binding Golgi protein, and contribute to Golgi organisation in animal [] and plant [] cells.
Probab=58.87 E-value=58 Score=28.93 Aligned_cols=64 Identities=28% Similarity=0.385 Sum_probs=33.5
Q ss_pred chhHHHHhhHHHHHHHHHHHHHHHHhhhhHHHHHhhHHHHHHHHHHHHHHhhHHHHHhhhhccc
Q 003570 619 GENEMLIGNLQAEVENLKVQQNKLQNSLIEEKLEKDNLAKQVFQLKDELQKKKEEINRTGKGLK 682 (810)
Q Consensus 619 dEkE~~i~~LqsE~e~lk~Q~~~LK~sL~~ee~EKe~l~kQv~qLk~eL~KKe~~~~~~ekklk 682 (810)
-||+..|..|+.|-+.|..+.-.+-+..-.=-.....+-+++..|+..+.+.+..+.++..+++
T Consensus 8 ~EKDe~Ia~L~eEGekLSk~el~~~~~IKKLr~~~~e~e~~~~~l~~~~~~~e~~~~~l~~~l~ 71 (74)
T PF12329_consen 8 AEKDEQIAQLMEEGEKLSKKELKLNNTIKKLRAKIKELEKQIKELKKKLEELEKELESLEERLK 71 (74)
T ss_pred HhHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 3667777777777777765543333322222222222335555555555555555555555443
No 181
>KOG0980 consensus Actin-binding protein SLA2/Huntingtin-interacting protein Hip1 [Cytoskeleton]
Probab=58.70 E-value=4.9e+02 Score=33.22 Aligned_cols=116 Identities=21% Similarity=0.198 Sum_probs=55.8
Q ss_pred HHHHHHHHHHHHhhhhhhhhHHHHHHHHHHHHHHHhhHHHHHHHHHHhHHHHhhhhhhhhccHHHHhHHHhhHHHHHHHH
Q 003570 435 RLQDEFRRLSVDMASKFDENEKLAMKAMTEANEQRMQKAHLEEMLQKANDELSLIKDQNGVKLQELSDQLEQKDKQIQKM 514 (810)
Q Consensus 435 rLQeEf~~LS~qmsSt~eeNEklt~kA~~EaseLR~qk~~LEemLqk~neeL~~i~dq~e~kl~eL~~qld~k~k~ie~m 514 (810)
-.+.=+..++.+++..--.-++++..|-+=+.-+++|..-|+--++.+.-+.+...++-+ +|....-|++.-..+.++-
T Consensus 330 ~~~~~~~~~~~e~~~~~~~l~~~~~ear~~~~q~~~ql~~le~~~~e~q~~~qe~~~e~e-qLr~elaql~a~r~q~eka 408 (980)
T KOG0980|consen 330 PRELQIEQLSREVAQLKAQLENLKEEARRRIEQYENQLLALEGELQEQQREAQENREEQE-QLRNELAQLLASRTQLEKA 408 (980)
T ss_pred hhhHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHH
Confidence 334444555555555544455555555555556666666666666655555444444444 3333333333333333332
Q ss_pred HHhhhhchhhhhHHhhhHHHHHHhHHHHHHHHHHHHHHHHHhhhhhhh
Q 003570 515 YLELDHSSSQLIDEHKSEAQKHEALSTEIHMLRTEIEKLRKEQYNLSE 562 (810)
Q Consensus 515 ~~Ele~kS~qle~~kk~~ee~~~a~s~EI~~Lk~eie~L~~e~~~l~e 562 (810)
..-+ ..-+.+.-++...+..+|..+..|..+-..|..
T Consensus 409 ~~~~-----------ee~e~~~l~~e~ry~klkek~t~l~~~h~~lL~ 445 (980)
T KOG0980|consen 409 QVLV-----------EEAENKALAAENRYEKLKEKYTELRQEHADLLR 445 (980)
T ss_pred HHHH-----------HhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 2111 111222334445556666666666666555533
No 182
>smart00787 Spc7 Spc7 kinetochore protein. This domain is found in cell division proteins which are required for kinetochore-spindle association.
Probab=58.65 E-value=2.9e+02 Score=30.60 Aligned_cols=77 Identities=18% Similarity=0.235 Sum_probs=38.0
Q ss_pred HHhhHHHHHHHHHHHHHHHHhhhhHHHHHhhHHHHHHHHHHHHHHhhHHHHHhhhhcccccCCCCchhhhhHHHHHHH
Q 003570 624 LIGNLQAEVENLKVQQNKLQNSLIEEKLEKDNLAKQVFQLKDELQKKKEEINRTGKGLKKYGGPVSDAQMTSMKERLR 701 (810)
Q Consensus 624 ~i~~LqsE~e~lk~Q~~~LK~sL~~ee~EKe~l~kQv~qLk~eL~KKe~~~~~~ekklk~s~g~~sd~~~~~~~~~ik 701 (810)
.+..++.+|..+..++...++.+.+-+.+...+...|-........-..+++..++.+...+| .|..++..++.++.
T Consensus 205 eL~~lk~~l~~~~~ei~~~~~~l~e~~~~l~~l~~~I~~~~~~k~e~~~~I~~ae~~~~~~r~-~t~~Ei~~Lk~~~~ 281 (312)
T smart00787 205 ELDRAKEKLKKLLQEIMIKVKKLEELEEELQELESKIEDLTNKKSELNTEIAEAEKKLEQCRG-FTFKEIEKLKEQLK 281 (312)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCC-CCHHHHHHHHHHHH
Confidence 334444444444444444444444444444444444444444444444445555555555555 35567777777665
No 183
>PF10481 CENP-F_N: Cenp-F N-terminal domain; InterPro: IPR018463 Mitosin or centromere-associated protein-F (Cenp-F) is found bound across the centromere as one of the proteins of the outer layer of the kinetochore []. Most of the kinetochore/centromere functions appear to depend upon binding of the C-terminal part of the molecule, whereas the N-terminal part, here, may be a cytoplasmic player in controlling the function of microtubules and dynein [].
Probab=58.10 E-value=1.3e+02 Score=33.53 Aligned_cols=128 Identities=16% Similarity=0.235 Sum_probs=87.2
Q ss_pred HHHHHHHHHHHHHHHHhhhhhhhcccccCCCCCCcccchhhHHHhhhhhhhhhHHHHHHHHHHHHHHHHHHHHhhhccCc
Q 003570 540 STEIHMLRTEIEKLRKEQYNLSEHGKRRDDNKPKVSTGETDMLIQKWNRERDDLEKKFASAKQEAAKAHEELISMRSLKG 619 (810)
Q Consensus 540 s~EI~~Lk~eie~L~~e~~~l~e~~~~~d~e~~k~s~~e~~~~lq~~~~er~el~~~~a~~kkeae~~~~EL~~m~~~kd 619 (810)
...|+.|...+++|++|+.-= .--++-.++.|++....-.+-...++.+|.|-....+...+|-..++
T Consensus 17 LqKIqelE~QldkLkKE~qQr------------QfQleSlEAaLqKQKqK~e~ek~e~s~LkREnq~l~e~c~~lek~rq 84 (307)
T PF10481_consen 17 LQKIQELEQQLDKLKKERQQR------------QFQLESLEAALQKQKQKVEEEKNEYSALKRENQSLMESCENLEKTRQ 84 (307)
T ss_pred HHHHHHHHHHHHHHHHHHHHH------------HHhHHHHHHHHHHHHHHHHHHhhhhhhhhhhhhhHHHHHHHHHHHHH
Confidence 356888888899888886541 00234567888888888888888888888888887777777655554
Q ss_pred hhHHHHhhHHHHHHHHHHHHHHHHhhhhHHHHHhhHHHHHHHHHHHHHHhhHHHHHhhhhcccccCC
Q 003570 620 ENEMLIGNLQAEVENLKVQQNKLQNSLIEEKLEKDNLAKQVFQLKDELQKKKEEINRTGKGLKKYGG 686 (810)
Q Consensus 620 EkE~~i~~LqsE~e~lk~Q~~~LK~sL~~ee~EKe~l~kQv~qLk~eL~KKe~~~~~~ekklk~s~g 686 (810)
--.--++.=-+.|..|..|++-.|. -.+.|-.-|..+|++|++--.+..+..-.|-...+
T Consensus 85 Klshdlq~Ke~qv~~lEgQl~s~Kk-------qie~Leqelkr~KsELErsQ~~~~~~~~sl~~~st 144 (307)
T PF10481_consen 85 KLSHDLQVKESQVNFLEGQLNSCKK-------QIEKLEQELKRCKSELERSQQAASSGDVSLNPCST 144 (307)
T ss_pred HhhHHHhhhHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHHhhccCCccccccCC
Confidence 4444455555566666666666665 34567777888888888877777655444443333
No 184
>TIGR01000 bacteriocin_acc bacteriocin secretion accessory protein. This family represents an accessory protein that works with the bacteriocin maturation and ABC transport secretion protein described by TIGR01193.
Probab=56.90 E-value=3.4e+02 Score=30.77 Aligned_cols=24 Identities=21% Similarity=0.466 Sum_probs=11.9
Q ss_pred HhhHHHHHHHHHHHHHHhhHHHHH
Q 003570 652 EKDNLAKQVFQLKDELQKKKEEIN 675 (810)
Q Consensus 652 EKe~l~kQv~qLk~eL~KKe~~~~ 675 (810)
+....+.++..++..|..-++.+.
T Consensus 292 ~l~~~~~~l~~~~~~l~~a~~~l~ 315 (457)
T TIGR01000 292 EITDLNQKLLELESKIKSLKEDSQ 315 (457)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHh
Confidence 344445555555555555554443
No 185
>TIGR03007 pepcterm_ChnLen polysaccharide chain length determinant protein, PEP-CTERM locus subfamily. Members of this protein family belong to the family of polysaccharide chain length determinant proteins (pfam02706). All are found in species that encode the PEP-CTERM/exosortase system predicted to act in protein sorting in a number of Gram-negative bacteria, and are found near the epsH homolog that is the putative exosortase gene.
Probab=56.75 E-value=3.4e+02 Score=30.72 Aligned_cols=55 Identities=20% Similarity=0.166 Sum_probs=28.3
Q ss_pred hhhhhHHHHHHHHHHHHHHHHHHHHhhhccCchhHHHHhhHHHHHHHHHHHHHHHHhhh
Q 003570 588 RERDDLEKKFASAKQEAAKAHEELISMRSLKGENEMLIGNLQAEVENLKVQQNKLQNSL 646 (810)
Q Consensus 588 ~er~el~~~~a~~kkeae~~~~EL~~m~~~kdEkE~~i~~LqsE~e~lk~Q~~~LK~sL 646 (810)
.+++.+...++.+.++.+....++..+ ...+.-+..|+.+++..+..|+.+...+
T Consensus 324 ~~~~~l~~~~~~l~~~~~~~~~~~~~~----~~~~~el~~L~Re~~~~~~~Y~~l~~r~ 378 (498)
T TIGR03007 324 AEIASLEARVAELTARIERLESLLRTI----PEVEAELTQLNRDYEVNKSNYEQLLTRR 378 (498)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhc----hHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 334444444444444444444444332 2445566666666666666666655443
No 186
>PF07798 DUF1640: Protein of unknown function (DUF1640); InterPro: IPR024461 This family consists of uncharacterised proteins.
Probab=56.24 E-value=2.2e+02 Score=28.52 Aligned_cols=98 Identities=24% Similarity=0.312 Sum_probs=53.2
Q ss_pred hHHHHHHHHHHHHHHhhhhhhHHHHHHhhHHhhhHHHHHHHHhhhhh--hhhHHHHhhhhhhhhhhHHHHHHHHHHhhhh
Q 003570 129 SELELLSLRKQVAKESKRAQDQTRQIISLSSERDALTIECEQLRKQN--SIDIAEIERRLQSEEHLKFLQEEIREELNYE 206 (810)
Q Consensus 129 selELQtLRKQi~KESKRgqdLsrEv~~lk~ERD~Lk~EcEqLksqk--~~~ea~~~~~lq~e~D~~~llEElr~EL~yE 206 (810)
...++..||.++.. .-.-++..++.+++.|+.++++|+.+- -+..-...-|+ |....--++|+|...
T Consensus 56 ~~a~~~eLr~el~~------~~k~~~~~lr~~~e~L~~eie~l~~~L~~ei~~l~a~~kl----D~n~eK~~~r~e~~~- 124 (177)
T PF07798_consen 56 FKAAIAELRSELQN------SRKSEFAELRSENEKLQREIEKLRQELREEINKLRAEVKL----DLNLEKGRIREEQAK- 124 (177)
T ss_pred HHHHHHHHHHHHHH------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHhHHHHHHHHHH-
Confidence 34455556666553 112456778889999999999988732 22222222222 332222344444322
Q ss_pred hhcchhhhhhhhhhhhhhHHHHHHHHHHHHHHHHhhhhhh
Q 003570 207 KEVSAHLRLQLEKTQDSNAELILAVKDLNEMLEQKNMEIS 246 (810)
Q Consensus 207 KelNaNL~LQLqKTQESNsELilAVqDLeeMLEqKn~EIs 246 (810)
+=.|.++=|..+---+.+|-..||.-+.++.
T Consensus 125 ---------~~~ki~e~~~ki~~ei~~lr~~iE~~K~~~l 155 (177)
T PF07798_consen 125 ---------QELKIQELNNKIDTEIANLRTEIESLKWDTL 155 (177)
T ss_pred ---------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 2234566666666666666666666555544
No 187
>PRK11546 zraP zinc resistance protein; Provisional
Probab=55.86 E-value=38 Score=33.90 Aligned_cols=65 Identities=18% Similarity=0.254 Sum_probs=51.7
Q ss_pred HHHhhhhhhhhccHHHHhHHHhhHHHHHHHHHHhhhhchhhhhHHhhhHHHHHHhHHHHHHHHHHHHHHHHHhhhh
Q 003570 484 DELSLIKDQNGVKLQELSDQLEQKDKQIQKMYLELDHSSSQLIDEHKSEAQKHEALSTEIHMLRTEIEKLRKEQYN 559 (810)
Q Consensus 484 eeL~~i~dq~e~kl~eL~~qld~k~k~ie~m~~Ele~kS~qle~~kk~~ee~~~a~s~EI~~Lk~eie~L~~e~~~ 559 (810)
..+..|.+.|-.+..+|+.+|-.|.-++.-++ ....-+.+++.++++||..|+.++..++...+.
T Consensus 50 a~~q~I~~~f~~~t~~LRqqL~aKr~ELnALl-----------~~~~pD~~kI~aL~kEI~~Lr~kL~e~r~~~~~ 114 (143)
T PRK11546 50 AAWQKIHNDFYAQTSALRQQLVSKRYEYNALL-----------TANPPDSSKINAVAKEMENLRQSLDELRVKRDI 114 (143)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-----------cCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45677888899999999999998888887763 234566788999999999999999877765443
No 188
>PF06160 EzrA: Septation ring formation regulator, EzrA ; InterPro: IPR010379 During the bacterial cell cycle, the tubulin-like cell-division protein FtsZ polymerises into a ring structure that establishes the location of the nascent division site. EzrA modulates the frequency and position of FtsZ ring formation [].; GO: 0000921 septin ring assembly, 0005940 septin ring, 0016021 integral to membrane
Probab=55.49 E-value=4.1e+02 Score=31.36 Aligned_cols=252 Identities=17% Similarity=0.296 Sum_probs=151.9
Q ss_pred HHHhHhhHhHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHhhhHHHHHHHHHHHHHHH-------HHhhhhhhhHHHHHHH
Q 003570 367 EEYSESLISINELECQVKELKRELDKQAQEFEDDIDAVTHAKTEQEQRAIRAEEELR-------KTRWKNTVTAERLQDE 439 (810)
Q Consensus 367 ~efSesL~tI~eLE~qv~sLeeEl~~Qaq~fe~Dldam~~~k~EQEqRAi~AEeaLr-------KtR~~na~taErLQeE 439 (810)
-.|..+-..|..++..+..++ .++......|+.+.....++..+.....+..+ ..|+.+..+++.|.+.
T Consensus 94 ~rf~ka~~~i~~~~~~l~~~e----~~i~~i~~~l~~L~~~e~~nr~~i~~l~~~y~~lrk~ll~~~~~~G~a~~~Le~~ 169 (560)
T PF06160_consen 94 YRFKKAKQAIKEIEEQLDEIE----EDIKEILDELDELLESEEKNREEIEELKEKYRELRKELLAHSFSYGPAIEELEKQ 169 (560)
T ss_pred ccHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhchhHHHHHHH
Confidence 345555555555555554444 44456666666776666666665555554433 3455666777777777
Q ss_pred HHHHHHHhhhhhhhhHHHHH-----HHHHHHHHHHhhHHHHHHHHHHhHHHHhhhhhhhhccHHHHhHHHhhHH------
Q 003570 440 FRRLSVDMASKFDENEKLAM-----KAMTEANEQRMQKAHLEEMLQKANDELSLIKDQNGVKLQELSDQLEQKD------ 508 (810)
Q Consensus 440 f~~LS~qmsSt~eeNEklt~-----kA~~EaseLR~qk~~LEemLqk~neeL~~i~dq~e~kl~eL~~qld~k~------ 508 (810)
+..|- +.|+.=+.+|- +|-.-...++.....|+.++.++=.=+..++..+-.+|++|..-...+.
T Consensus 170 L~~ie----~~F~~f~~lt~~GD~~~A~eil~~l~~~~~~l~~~~e~IP~l~~~l~~~~P~ql~eL~~gy~~m~~~gy~l 245 (560)
T PF06160_consen 170 LENIE----EEFSEFEELTENGDYLEAREILEKLKEETDELEEIMEDIPKLYKELQKEFPDQLEELKEGYREMEEEGYYL 245 (560)
T ss_pred HHHHH----HHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHhHHHHHHHHHHHHHHHHCCCCC
Confidence 76654 45666666654 5777778889999999999999888888888888888888876555433
Q ss_pred ------HHHHHHHHhhhhchhhhhHHh-hhHHHHHHhHHHHHHHHHHHHHHHHHhhhhhhhcccccCCCCCCcccchhhH
Q 003570 509 ------KQIQKMYLELDHSSSQLIDEH-KSEAQKHEALSTEIHMLRTEIEKLRKEQYNLSEHGKRRDDNKPKVSTGETDM 581 (810)
Q Consensus 509 ------k~ie~m~~Ele~kS~qle~~k-k~~ee~~~a~s~EI~~Lk~eie~L~~e~~~l~e~~~~~d~e~~k~s~~e~~~ 581 (810)
++|+++...+..-...|.+.. ..-++....+..+|+.|-.-+++=-...+..
T Consensus 246 ~~~~i~~~i~~i~~~l~~~~~~L~~l~l~~~~~~~~~i~~~Id~lYd~le~E~~Ak~~V--------------------- 304 (560)
T PF06160_consen 246 EHLDIEEEIEQIEEQLEEALALLKNLELDEVEEENEEIEERIDQLYDILEKEVEAKKYV--------------------- 304 (560)
T ss_pred CCCCHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---------------------
Confidence 233333333333333332221 1112222233333333322222111111111
Q ss_pred HHhhhhhhhhhHHHHHHHHHHHHHHHHHHHHhhhc---cCchhHHHHhhHHHHHHHHHHHHHHHHhhhhHHHHH
Q 003570 582 LIQKWNRERDDLEKKFASAKQEAAKAHEELISMRS---LKGENEMLIGNLQAEVENLKVQQNKLQNSLIEEKLE 652 (810)
Q Consensus 582 ~lq~~~~er~el~~~~a~~kkeae~~~~EL~~m~~---~kdEkE~~i~~LqsE~e~lk~Q~~~LK~sL~~ee~E 652 (810)
......+...+.-+++.......|+.++.. +.+......+.+..++..+..+|..+...+.....-
T Consensus 305 -----~~~~~~l~~~l~~~~~~~~~l~~e~~~v~~sY~L~~~e~~~~~~l~~~l~~l~~~~~~~~~~i~~~~~~ 373 (560)
T PF06160_consen 305 -----EKNLKELYEYLEHAKEQNKELKEELERVSQSYTLNHNELEIVRELEKQLKELEKRYEDLEERIEEQQVP 373 (560)
T ss_pred -----HHhHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCcC
Confidence 122345666777778888888888888765 677677788999999999999999888877665543
No 189
>KOG0804 consensus Cytoplasmic Zn-finger protein BRAP2 (BRCA1 associated protein) [General function prediction only]
Probab=55.25 E-value=3.8e+02 Score=31.81 Aligned_cols=27 Identities=30% Similarity=0.447 Sum_probs=17.9
Q ss_pred hHHHhhHHHHHHHHHHhhhhchhhhhHHh
Q 003570 501 SDQLEQKDKQIQKMYLELDHSSSQLIDEH 529 (810)
Q Consensus 501 ~~qld~k~k~ie~m~~Ele~kS~qle~~k 529 (810)
--|++...+-.++-+.+++. .||++++
T Consensus 327 ~sqleSqr~y~e~~~~e~~q--sqlen~k 353 (493)
T KOG0804|consen 327 TSQLESQRKYYEQIMSEYEQ--SQLENQK 353 (493)
T ss_pred hhhhhHHHHHHHHHHHHHHH--HHHHhHH
Confidence 45666777777777777666 6666665
No 190
>PF10267 Tmemb_cc2: Predicted transmembrane and coiled-coil 2 protein; InterPro: IPR019394 This family of transmembrane coiled-coil containing proteins is conserved from worms to humans. Its function is unknown.
Probab=54.44 E-value=2.1e+02 Score=33.02 Aligned_cols=62 Identities=18% Similarity=0.126 Sum_probs=47.7
Q ss_pred CCCCCcchHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHhhhhhhHHHHHHhhHHhhhHHHHHHHHh
Q 003570 104 DNLGSDGSVEKLKNEIAVMMRQVELSELELLSLRKQVAKESKRAQDQTRQIISLSSERDALTIECEQL 171 (810)
Q Consensus 104 d~l~sd~~iEkLKsE~~~l~Rq~e~selELQtLRKQi~KESKRgqdLsrEv~~lk~ERD~Lk~EcEqL 171 (810)
...|....+..+..|+..+.......+.+++.|+-++-. |+.--..+|.+||..+..==|||
T Consensus 206 ~~~~~~~~l~~~~~el~eik~~~~~L~~~~e~Lk~~~~~------e~~~~~~~LqEEr~R~erLEeql 267 (395)
T PF10267_consen 206 VSSQQNLGLQKILEELREIKESQSRLEESIEKLKEQYQR------EYQFILEALQEERYRYERLEEQL 267 (395)
T ss_pred ccccccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH------HHHHHHHHHHHhHHHHHHHHHHH
Confidence 334467799999999999999999999999999988765 44566678888888766543444
No 191
>PF12329 TMF_DNA_bd: TATA element modulatory factor 1 DNA binding; InterPro: IPR022092 This is the middle region of a family of TATA element modulatory factor 1 proteins conserved in eukaryotes that contains at its N-terminal section a number of leucine zippers that could potentially form coiled coil structures. The whole proteins bind to the TATA element of some RNA polymerase II promoters and repress their activity. by competing with the binding of TATA binding protein. TMFs are evolutionarily conserved golgins that bind Rab6, a ubiquitous ras-like GTP-binding Golgi protein, and contribute to Golgi organisation in animal [] and plant [] cells.
Probab=54.26 E-value=1.1e+02 Score=27.15 Aligned_cols=51 Identities=18% Similarity=0.236 Sum_probs=41.6
Q ss_pred hhhHhhHHHHHHHHHHHHHHHHHHhHHHhHhhHhHHHHHHHHHHHHHHHHH
Q 003570 342 IESLATIKELESQSERLEDKIKQQSEEYSESLISINELECQVKELKRELDK 392 (810)
Q Consensus 342 S~~~~~i~eLe~qve~LE~eLk~q~~efSesL~tI~eLE~qv~sLeeEl~~ 392 (810)
|+....|.+=..+|..|-.+-.++++--...-.+|..|-+++..+++.+..
T Consensus 1 ~sl~~~l~EKDe~Ia~L~eEGekLSk~el~~~~~IKKLr~~~~e~e~~~~~ 51 (74)
T PF12329_consen 1 SSLEKKLAEKDEQIAQLMEEGEKLSKKELKLNNTIKKLRAKIKELEKQIKE 51 (74)
T ss_pred ChHHHHHHhHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHH
Confidence 345667777778999999999999998888889999999998888766553
No 192
>PLN02939 transferase, transferring glycosyl groups
Probab=53.46 E-value=6.1e+02 Score=32.68 Aligned_cols=46 Identities=17% Similarity=0.195 Sum_probs=32.1
Q ss_pred hHHHHHHHHHHHHHHhh----hhhhHHHHHHhhHHhhhHHHHHHHHhhhh
Q 003570 129 SELELLSLRKQVAKESK----RAQDQTRQIISLSSERDALTIECEQLRKQ 174 (810)
Q Consensus 129 selELQtLRKQi~KESK----RgqdLsrEv~~lk~ERD~Lk~EcEqLksq 174 (810)
.+-.|+.||+++.-..- .-..|+.|+..|++|--.||..++-||..
T Consensus 199 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 248 (977)
T PLN02939 199 LEEQLEKLRNELLIRGATEGLCVHSLSKELDVLKEENMLLKDDIQFLKAE 248 (977)
T ss_pred hHHHHHHHhhhhhccccccccccccHHHHHHHHHHHhHHHHHHHHHHHHH
Confidence 34456667777653211 12238999999999999999999988873
No 193
>KOG4438 consensus Centromere-associated protein NUF2 [Cell cycle control, cell division, chromosome partitioning]
Probab=52.99 E-value=4.5e+02 Score=31.00 Aligned_cols=189 Identities=21% Similarity=0.221 Sum_probs=0.0
Q ss_pred HHHHHHhHHHHhhhhhhhhccHHHHhHHHhhHHHHHHHHHHhhhhchhhhhHHhhhHHHHHHhHHHHHHHHHHHHHHHHH
Q 003570 476 EEMLQKANDELSLIKDQNGVKLQELSDQLEQKDKQIQKMYLELDHSSSQLIDEHKSEAQKHEALSTEIHMLRTEIEKLRK 555 (810)
Q Consensus 476 EemLqk~neeL~~i~dq~e~kl~eL~~qld~k~k~ie~m~~Ele~kS~qle~~kk~~ee~~~a~s~EI~~Lk~eie~L~~ 555 (810)
|+..+.++.-+.. |++.+ ++.+++|.+-++...-+...++---.-+.--++-++-+..+.+-+-.+.-.-..+..
T Consensus 127 e~k~~~~~~~~~q----~esll-e~~~q~da~~qq~~~ele~~d~~~~~d~ee~kqlEe~ieeL~qsl~kd~~~~~~l~~ 201 (446)
T KOG4438|consen 127 EEKMDLYRPFIQQ----LESLL-ELRKQLDAKYQQALKELERFDEDVEEDEEEVKQLEENIEELNQSLLKDFNQQMSLLA 201 (446)
T ss_pred HHHHHHHHHHHHH----HHHHH-HHHHHHHHHHHHHHHHHHhhcccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_pred hhhhhhhcc----------------------------cccCCCCCCcccchhhHHHhhhhhhhhhHHHHHHHHHHHHHHH
Q 003570 556 EQYNLSEHG----------------------------KRRDDNKPKVSTGETDMLIQKWNRERDDLEKKFASAKQEAAKA 607 (810)
Q Consensus 556 e~~~l~e~~----------------------------~~~d~e~~k~s~~e~~~~lq~~~~er~el~~~~a~~kkeae~~ 607 (810)
+.+...... .-.+-++++-.++++.-++++...-+.+|..+.+-+.
T Consensus 202 e~n~~k~s~~s~~~k~l~al~llv~tLee~~~~LktqIV~sPeKL~~~leemk~~l~k~k~~~~~l~~K~~iL~------ 275 (446)
T KOG4438|consen 202 EYNKMKKSSTSEKNKILNALKLLVVTLEENANCLKTQIVQSPEKLKEALEEMKDLLQKEKSAMVELQEKAKILE------ 275 (446)
T ss_pred HHHHHhHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH------
Q ss_pred HHHHHhhhccCchhHHHHhhHHHHH---HHHHHHHHHHHhhhhHHHHHh------------hHHHHHHHHHHHHHHhhHH
Q 003570 608 HEELISMRSLKGENEMLIGNLQAEV---ENLKVQQNKLQNSLIEEKLEK------------DNLAKQVFQLKDELQKKKE 672 (810)
Q Consensus 608 ~~EL~~m~~~kdEkE~~i~~LqsE~---e~lk~Q~~~LK~sL~~ee~EK------------e~l~kQv~qLk~eL~KKe~ 672 (810)
+=+++|.....|=-..+..+++.+ .++..---.||.++--++.=. +++.||..-++.+..+...
T Consensus 276 -ekv~~~qti~~e~~~~lk~i~~~~~e~d~~Et~~v~lke~~~Le~q~e~~~~e~~~lk~~e~~~kqL~~~~kek~~~~Q 354 (446)
T KOG4438|consen 276 -EKVTNLQTIEKELKALLKKISSDGVEYDSLETKVVELKEILELEDQIELNQLELEKLKMFENLTKQLNELKKEKESRRQ 354 (446)
T ss_pred -hHhHHHHHHHHHHHHHHHHHHHhhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_pred HHHh
Q 003570 673 EINR 676 (810)
Q Consensus 673 ~~~~ 676 (810)
...+
T Consensus 355 d~~~ 358 (446)
T KOG4438|consen 355 DLEN 358 (446)
T ss_pred HHHH
No 194
>COG2433 Uncharacterized conserved protein [Function unknown]
Probab=52.95 E-value=1.9e+02 Score=35.21 Aligned_cols=84 Identities=18% Similarity=0.105 Sum_probs=41.1
Q ss_pred ccccccccCCcccc------cCCCCCcccCCCCCCCCCCCcchHHHHHHHHHH--HHhhhhhhHHHHHHHHHHHHHHhhh
Q 003570 75 NHAHRRSNTDWSVG------SISDGSLAESTNSPDDNLGSDGSVEKLKNEIAV--MMRQVELSELELLSLRKQVAKESKR 146 (810)
Q Consensus 75 ~~~h~rs~~dWS~~------S~~d~S~~dStnssed~l~sd~~iEkLKsE~~~--l~Rq~e~selELQtLRKQi~KESKR 146 (810)
.-+|.-|..+||-| |..|-...-. -|.-|.+++++++.+=..+ |.=-.++|=-|-+-++ |
T Consensus 265 evl~~~S~r~~~~~eVve~I~~lG~PvvVA----tDVtp~P~~V~KiAasf~A~ly~P~~dLsveEK~~~~--------r 332 (652)
T COG2433 265 EVLDLESRRGIDRSEVVEFISELGKPVVVA----TDVTPAPETVKKIAASFNAVLYTPDRDLSVEEKQEAL--------R 332 (652)
T ss_pred cEEeeeccccCCHHHHHHHHHHcCCceEEE----ccCCCChHHHHHHHHHcCCcccCCcccCCHHHHHHHH--------h
Confidence 34677788888765 2233322222 2444566799998764432 2233344444433211 1
Q ss_pred hhhHHHHHHhhHHhhhHHHHHHHHhhh
Q 003570 147 AQDQTRQIISLSSERDALTIECEQLRK 173 (810)
Q Consensus 147 gqdLsrEv~~lk~ERD~Lk~EcEqLks 173 (810)
.+..+ .+=--+||||-.-+--..+
T Consensus 333 ~~~~~---~~ddH~RDALAAA~kAY~~ 356 (652)
T COG2433 333 TLKIS---VSDDHERDALAAAYKAYLA 356 (652)
T ss_pred hcCCC---CCCchHHHHHHHHHHHHHH
Confidence 11111 1122478888776654444
No 195
>PLN03188 kinesin-12 family protein; Provisional
Probab=52.80 E-value=5.7e+02 Score=33.85 Aligned_cols=108 Identities=25% Similarity=0.228 Sum_probs=62.8
Q ss_pred HHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHhhhhhhHHHHHHhhHHh-hhHHHHHHHHhhh-hhhhh-----------
Q 003570 112 VEKLKNEIAVMMRQVELSELELLSLRKQVAKESKRAQDQTRQIISLSSE-RDALTIECEQLRK-QNSID----------- 178 (810)
Q Consensus 112 iEkLKsE~~~l~Rq~e~selELQtLRKQi~KESKRgqdLsrEv~~lk~E-RD~Lk~EcEqLks-qk~~~----------- 178 (810)
++.||.|+.+|...+++..+||.+ -|.|+.|=+-+-..+++=-+=-=| ---|...+-+|-. .++|.
T Consensus 1067 teelr~eles~r~l~Ekl~~EL~~-eK~c~eel~~a~q~am~ghar~~e~ya~l~ek~~~ll~~hr~i~egi~dvkkaaa 1145 (1320)
T PLN03188 1067 AEELRTELDASRALAEKQKHELDT-EKRCAEELKEAMQMAMEGHARMLEQYADLEEKHIQLLARHRRIQEGIDDVKKAAA 1145 (1320)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHH-hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 378999999999999999999986 455776666554444431110000 0113333334433 11111
Q ss_pred HHHHh-------hhhhhhhhhHHHHHHHHHHhhhhhhcchhhhhhhhhhhh
Q 003570 179 IAEIE-------RRLQSEEHLKFLQEEIREELNYEKEVSAHLRLQLEKTQD 222 (810)
Q Consensus 179 ea~~~-------~~lq~e~D~~~llEElr~EL~yEKelNaNL~LQLqKTQE 222 (810)
.|-+. |.|.++. ..+--|=+.|-.|-|+=|..|+.||.-|-|
T Consensus 1146 kag~kg~~~~f~~alaae~--s~l~~ereker~~~~~enk~l~~qlrdtae 1194 (1320)
T PLN03188 1146 RAGVRGAESKFINALAAEI--SALKVEREKERRYLRDENKSLQAQLRDTAE 1194 (1320)
T ss_pred HhccccchHHHHHHHHHHH--HHHHHHHHHHHHHHHHhhHHHHHHHhhHHH
Confidence 11111 2232332 122334567888999999999999999955
No 196
>PF10481 CENP-F_N: Cenp-F N-terminal domain; InterPro: IPR018463 Mitosin or centromere-associated protein-F (Cenp-F) is found bound across the centromere as one of the proteins of the outer layer of the kinetochore []. Most of the kinetochore/centromere functions appear to depend upon binding of the C-terminal part of the molecule, whereas the N-terminal part, here, may be a cytoplasmic player in controlling the function of microtubules and dynein [].
Probab=51.93 E-value=3.4e+02 Score=30.45 Aligned_cols=95 Identities=25% Similarity=0.384 Sum_probs=46.8
Q ss_pred HHHHHhhhHHHHhhhhHHHHHHHHHHHH--------------HHHHHHHhhhhhhhhHHHHHHHHhhhhhhhhhhhHhhH
Q 003570 283 QKIRDQGDEIQFFKKHAEDLEIYIKQLT--------------EDCQVLEQENQCLTSKLEKIQQQESMKSRECIESLATI 348 (810)
Q Consensus 283 qKI~DL~~Eie~ykkerEeLe~~ieQL~--------------~D~E~LkqEN~~ls~kLEq~q~Qeql~~~EcS~~~~~i 348 (810)
+||.++-+-++-.+|++--=-.+|+-|+ ..|-.|++||+.|..-.+.-+... .-|+ ..+
T Consensus 18 qKIqelE~QldkLkKE~qQrQfQleSlEAaLqKQKqK~e~ek~e~s~LkREnq~l~e~c~~lek~r----qKls---hdl 90 (307)
T PF10481_consen 18 QKIQELEQQLDKLKKERQQRQFQLESLEAALQKQKQKVEEEKNEYSALKRENQSLMESCENLEKTR----QKLS---HDL 90 (307)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHhhhhhhhhhhhhhHHHHHHHHHHHH----HHhh---HHH
Confidence 5677776666666666554444444443 345555565555543332211111 0111 011
Q ss_pred HHHHHHHHHHHHHHHHHhHHHhHhhHhHHHHHHHHHHHHHHHH
Q 003570 349 KELESQSERLEDKIKQQSEEYSESLISINELECQVKELKRELD 391 (810)
Q Consensus 349 ~eLe~qve~LE~eLk~q~~efSesL~tI~eLE~qv~sLeeEl~ 391 (810)
.-=++||.-||..| +.|=+.|..|+..++.+..+|+
T Consensus 91 q~Ke~qv~~lEgQl-------~s~Kkqie~Leqelkr~KsELE 126 (307)
T PF10481_consen 91 QVKESQVNFLEGQL-------NSCKKQIEKLEQELKRCKSELE 126 (307)
T ss_pred hhhHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHHH
Confidence 11125666666655 3344466666666666666655
No 197
>PRK10884 SH3 domain-containing protein; Provisional
Probab=51.92 E-value=57 Score=34.02 Aligned_cols=55 Identities=15% Similarity=0.119 Sum_probs=28.3
Q ss_pred cccccccccccccccCCcccccCCCCCcccCCCCCC-CCCC-CcchHHHHHHHHHHHH
Q 003570 68 VDAIKTHNHAHRRSNTDWSVGSISDGSLAESTNSPD-DNLG-SDGSVEKLKNEIAVMM 123 (810)
Q Consensus 68 v~~~~~~~~~h~rs~~dWS~~S~~d~S~~dStnsse-d~l~-sd~~iEkLKsE~~~l~ 123 (810)
+.+-++..-......++|+==-+++|. .+|..++. ..-| .-.-+.+|..|++.+.
T Consensus 50 l~~G~~v~vl~~~~~~~w~~Vr~~~G~-~GWV~~~~Ls~~p~~~~rlp~le~el~~l~ 106 (206)
T PRK10884 50 LNAGEEVTLLQVNANTNYAQIRDSKGR-TAWIPLKQLSTTPSLRTRVPDLENQVKTLT 106 (206)
T ss_pred EcCCCEEEEEEEcCCCCEEEEEeCCCC-EEeEEHHHhcCCccHHHHHHHHHHHHHHHH
Confidence 444444444444455788876666554 36666662 2223 2245555555555554
No 198
>PF04645 DUF603: Protein of unknown function, DUF603; InterPro: IPR006739 This family includes several uncharacterised proteins from Borrelia species.
Probab=51.13 E-value=32 Score=35.66 Aligned_cols=51 Identities=31% Similarity=0.417 Sum_probs=38.0
Q ss_pred HHHhhhhhhHHHHHHHHHHHHHHhhhhhhHHHHHHhhHHhhhHHHHHHHHhhh
Q 003570 121 VMMRQVELSELELLSLRKQVAKESKRAQDQTRQIISLSSERDALTIECEQLRK 173 (810)
Q Consensus 121 ~l~Rq~e~selELQtLRKQi~KESKRgqdLsrEv~~lk~ERD~Lk~EcEqLks 173 (810)
+..-....++.++.+|+++|.+.+++ ++..++.+|+-|=|.+..||+-..-
T Consensus 109 s~~~ei~~L~~kI~~L~~~in~~~k~--~~n~~i~slk~EL~d~iKe~e~~em 159 (181)
T PF04645_consen 109 SIKKEIEILRLKISSLQKEINKNKKK--DLNEEIESLKSELNDLIKEREIREM 159 (181)
T ss_pred HHHHHHHHHHHHHHHHHHHhhhhhhh--hhhhhHHHHHHHHHHHHHHHHHHHH
Confidence 34445566777888888888888876 4566788888888888888886544
No 199
>KOG0239 consensus Kinesin (KAR3 subfamily) [Cytoskeleton]
Probab=50.94 E-value=5.5e+02 Score=31.49 Aligned_cols=38 Identities=29% Similarity=0.525 Sum_probs=25.1
Q ss_pred hHHHHHHHHHHHHHHHHhhhhHHHHHhhHHHHHHHHHHHHHH
Q 003570 627 NLQAEVENLKVQQNKLQNSLIEEKLEKDNLAKQVFQLKDELQ 668 (810)
Q Consensus 627 ~LqsE~e~lk~Q~~~LK~sL~~ee~EKe~l~kQv~qLk~eL~ 668 (810)
.+++++..+... |.... .++.+.-+|.-+|.+|||-+.
T Consensus 280 ~~~~~L~~~~~~---l~~~~-~e~~~r~kL~N~i~eLkGnIR 317 (670)
T KOG0239|consen 280 TLQSDLESLEEN---LVEKK-KEKEERRKLHNEILELKGNIR 317 (670)
T ss_pred HHHHHHHHHHHH---HHHHH-HHHHHHHHHHHHHHHhhcCce
Confidence 334454444444 44444 677888899999999998654
No 200
>smart00338 BRLZ basic region leucin zipper.
Probab=50.70 E-value=43 Score=28.19 Aligned_cols=37 Identities=19% Similarity=0.305 Sum_probs=20.3
Q ss_pred HHHHhhhHHHHhhhhHHHHHHHHHHHHHHHHHHHhhh
Q 003570 284 KIRDQGDEIQFFKKHAEDLEIYIKQLTEDCQVLEQEN 320 (810)
Q Consensus 284 KI~DL~~Eie~ykkerEeLe~~ieQL~~D~E~LkqEN 320 (810)
.|.+|-+++..+..++..|..++.+|..++..|++.|
T Consensus 27 ~~~~Le~~~~~L~~en~~L~~~~~~l~~e~~~lk~~~ 63 (65)
T smart00338 27 EIEELERKVEQLEAENERLKKEIERLRRELEKLKSEL 63 (65)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 3444444555555555556666666666666655543
No 201
>PF11932 DUF3450: Protein of unknown function (DUF3450); InterPro: IPR016866 There is currently no experimental data for members of this group or their homologues, nor do they exhibit features indicative of any function. However, they are found in an operon along with components of a TonB transport system (typified by Vibrio cholerae TonB2 [], and are predicted to be localized to the periplasmic space. Caution: the low-complexity nature of these sequences produces spurious BLAST hits to chromosome segregation ATPases (which are much longer in length and contain canonical Walker motifs). Accordingly, some members are misidentified as such.
Probab=50.60 E-value=1.6e+02 Score=30.82 Aligned_cols=83 Identities=20% Similarity=0.232 Sum_probs=63.2
Q ss_pred HHHHHHHHHHHHhhhccCchhHHHHhhHHHHHHHHHHHHHHHHhhhhHHHHHhhHHHHHHHHHHHHHHhhHHHHHhhhhc
Q 003570 601 KQEAAKAHEELISMRSLKGENEMLIGNLQAEVENLKVQQNKLQNSLIEEKLEKDNLAKQVFQLKDELQKKKEEINRTGKG 680 (810)
Q Consensus 601 kkeae~~~~EL~~m~~~kdEkE~~i~~LqsE~e~lk~Q~~~LK~sL~~ee~EKe~l~kQv~qLk~eL~KKe~~~~~~ekk 680 (810)
-..+..++.....+---+.+-...++.|..+++.|+.+...+...+..-+.+...|..|+.++.+-...-..-+..|-..
T Consensus 34 ~~~~~~sQ~~id~~~~e~~~L~~e~~~l~~e~e~L~~~~~~l~~~v~~q~~el~~L~~qi~~~~~~~~~l~p~m~~m~~~ 113 (251)
T PF11932_consen 34 VQAAQQSQKRIDQWDDEKQELLAEYRQLEREIENLEVYNEQLERQVASQEQELASLEQQIEQIEETRQELVPLMEQMIDE 113 (251)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33344455555555555566667788889999999999999999999999999999999988887777666666666666
Q ss_pred ccc
Q 003570 681 LKK 683 (810)
Q Consensus 681 lk~ 683 (810)
|..
T Consensus 114 L~~ 116 (251)
T PF11932_consen 114 LEQ 116 (251)
T ss_pred HHH
Confidence 665
No 202
>PF15397 DUF4618: Domain of unknown function (DUF4618)
Probab=50.11 E-value=3.8e+02 Score=29.39 Aligned_cols=89 Identities=15% Similarity=0.237 Sum_probs=43.8
Q ss_pred HHHHHHHHHHHHhhhhhhhhHHHHHHHHhhhhhhhhhhhHhhHHHHHHHHHHHHHHHHHHhHHHhHhhHhHHH-HHHHHH
Q 003570 306 IKQLTEDCQVLEQENQCLTSKLEKIQQQESMKSRECIESLATIKELESQSERLEDKIKQQSEEYSESLISINE-LECQVK 384 (810)
Q Consensus 306 ieQL~~D~E~LkqEN~~ls~kLEq~q~Qeql~~~EcS~~~~~i~eLe~qve~LE~eLk~q~~efSesL~tI~e-LE~qv~ 384 (810)
|++|..-|..|...|..+....-..+...- .+|. +|=.+..-|-....+|+- -..++.
T Consensus 8 l~el~~h~~~L~~~N~~L~~~IqdtE~st~-----------------~~Vr----~lLqqy~~~~~~i~~le~~~~~~l~ 66 (258)
T PF15397_consen 8 LQELKKHEDFLTKLNKELIKEIQDTEDSTA-----------------LKVR----KLLQQYDIYRTAIDILEYSNHKQLQ 66 (258)
T ss_pred HHHHHHHHHHHHHhhHHHHHHHHhHHhhHH-----------------HHHH----HHHHHHHHHHHHHHHHHccChHHHH
Confidence 455666666666666655544433222220 1222 222333344444333332 234566
Q ss_pred HHHHHHHHHHHHHHhhHHHHHhhhHHHHHHH
Q 003570 385 ELKRELDKQAQEFEDDIDAVTHAKTEQEQRA 415 (810)
Q Consensus 385 sLeeEl~~Qaq~fe~Dldam~~~k~EQEqRA 415 (810)
.+..+|.+=...++.++..|...=..-+.|.
T Consensus 67 ~ak~eLqe~eek~e~~l~~Lq~ql~~l~akI 97 (258)
T PF15397_consen 67 QAKAELQEWEEKEESKLSKLQQQLEQLDAKI 97 (258)
T ss_pred HHHHHHHHHHHHHHhHHHHHHHHHHHHHHHH
Confidence 6666666666677777666655444444443
No 203
>KOG0244 consensus Kinesin-like protein [Cytoskeleton]
Probab=49.99 E-value=2e+02 Score=36.44 Aligned_cols=160 Identities=21% Similarity=0.188 Sum_probs=97.7
Q ss_pred cHHHHhHHHhhHHHHHHHHHHhhhhchhhhhHHhhhHHHHHHhHHHHHHHHHHHHHHHHHhhhhhhhcccccCCCCCCcc
Q 003570 496 KLQELSDQLEQKDKQIQKMYLELDHSSSQLIDEHKSEAQKHEALSTEIHMLRTEIEKLRKEQYNLSEHGKRRDDNKPKVS 575 (810)
Q Consensus 496 kl~eL~~qld~k~k~ie~m~~Ele~kS~qle~~kk~~ee~~~a~s~EI~~Lk~eie~L~~e~~~l~e~~~~~d~e~~k~s 575 (810)
.+.++..+|+.|..-+.++..+...+ .-.+-|.+.....+-.|+.-+.+|..+|..|...+.-
T Consensus 475 el~el~k~l~~Ke~l~rr~~~~~~~~----~~~~~~~e~~~~~le~e~~~le~E~~~l~~el~~~~~------------- 537 (913)
T KOG0244|consen 475 ELSELEKRLAEKEPLTRRKAYEKAEK----SKAKEQYESDSGTLEAEKSPLESERSRLRNELNVFNR------------- 537 (913)
T ss_pred HHHHHHhhhccccHHHHHHHHhhhhh----hHHHHHHhhhhhhHHHHhcccccccHHHHHHHHhhhH-------------
Confidence 56677888888888888886654433 3344455555555666666666666666666655522
Q ss_pred cchhhHHHhhhhhhhhhHHHHHHHHHHHHHHHHHHHHhhhccCchhHHHHhhHHHHHHHHHHHHHHHHhhhhHHHH----
Q 003570 576 TGETDMLIQKWNRERDDLEKKFASAKQEAAKAHEELISMRSLKGENEMLIGNLQAEVENLKVQQNKLQNSLIEEKL---- 651 (810)
Q Consensus 576 ~~e~~~~lq~~~~er~el~~~~a~~kkeae~~~~EL~~m~~~kdEkE~~i~~LqsE~e~lk~Q~~~LK~sL~~ee~---- 651 (810)
.+-.+-+.....+..|++.++.+++- +.+--.+-..+.--+.++..|..||-.++.|--.|-.-..++-.
T Consensus 538 --~~~kl~eer~qklk~le~q~s~lkk~----l~~~~~l~~~~~~~~~~~~kl~~ei~~~k~~kv~l~~~~~~d~ekfr~ 611 (913)
T KOG0244|consen 538 --LAAKLGEERVQKLKSLETQISLLKKK----LSSQRKLIKPKPKSEGIRAKLLQEIHIAKGQKVQLLRVMKEDAEKFRQ 611 (913)
T ss_pred --HHHHhhhHHHHHHHHHHHHHHHHHHh----hHHHHHHhccchhhHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHH
Confidence 22233344445566777777776653 23333344455555677888999999999998777665554421
Q ss_pred HhhHHHHHHHHHHHHHHhhHHHHHhhh
Q 003570 652 EKDNLAKQVFQLKDELQKKKEEINRTG 678 (810)
Q Consensus 652 EKe~l~kQv~qLk~eL~KKe~~~~~~e 678 (810)
=|..--|-+.||+|...+.+.++-..+
T Consensus 612 ~K~~~~Ke~~qlk~~~rk~~~~~~~~~ 638 (913)
T KOG0244|consen 612 WKDRTEKEWNQLKGQERKSEGEHPKLE 638 (913)
T ss_pred HHHHHHHHHHHHhccchhhccchhHHH
Confidence 133334556777777776666554443
No 204
>PF10212 TTKRSYEDQ: Predicted coiled-coil domain-containing protein; InterPro: IPR019348 This entry represents a C-terminal 500 residue region, which contains a conserved TTKRSYEDQ motif. It is found in a family of coiled-coil domain-containing proteins that are conserved from nematodes to humans. These proteins also contain an N-terminal domain with a KLRAQ motif (IPR019343 from INTERPRO). The function of these proteins is not known.
Probab=49.45 E-value=3.3e+02 Score=32.61 Aligned_cols=91 Identities=19% Similarity=0.340 Sum_probs=59.3
Q ss_pred hhHHHHHHHHHHHHHHHHHHHhhhhhhhhHHHHHHHHhhhhhhhhhhhHhhHHHHHHHHHHHHHHHHHHhHHHhHhhHhH
Q 003570 297 KHAEDLEIYIKQLTEDCQVLEQENQCLTSKLEKIQQQESMKSRECIESLATIKELESQSERLEDKIKQQSEEYSESLISI 376 (810)
Q Consensus 297 kerEeLe~~ieQL~~D~E~LkqEN~~ls~kLEq~q~Qeql~~~EcS~~~~~i~eLe~qve~LE~eLk~q~~efSesL~tI 376 (810)
...++|-.+++....-.-.+..|...|..+|+..+...+- ....+..+.+.|.+|+.+|-..+..|=+= |
T Consensus 420 ~RI~eLt~qlQ~adSKa~~f~~Ec~aL~~rL~~aE~ek~~-------l~eeL~~a~~~i~~LqDEL~TTr~NYE~Q---L 489 (518)
T PF10212_consen 420 SRIEELTSQLQHADSKAVHFYAECRALQKRLESAEKEKES-------LEEELKEANQNISRLQDELETTRRNYEEQ---L 489 (518)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHHHHhhHHHH---H
Confidence 5566666666666666666666666666688776543321 12336666788889999998888766543 4
Q ss_pred HHHHHHHHHHHHHHHHHHHHH
Q 003570 377 NELECQVKELKRELDKQAQEF 397 (810)
Q Consensus 377 ~eLE~qv~sLeeEl~~Qaq~f 397 (810)
+.+=.|+.+|-+.|.+|...+
T Consensus 490 s~MSEHLasmNeqL~~Q~eeI 510 (518)
T PF10212_consen 490 SMMSEHLASMNEQLAKQREEI 510 (518)
T ss_pred HHHHHHHHHHHHHHHHHHHHH
Confidence 445557777777777765543
No 205
>PRK09841 cryptic autophosphorylating protein tyrosine kinase Etk; Provisional
Probab=48.27 E-value=5.8e+02 Score=30.95 Aligned_cols=100 Identities=16% Similarity=0.248 Sum_probs=68.5
Q ss_pred HHHHHHHHhhhHHHHhhhhHHHHHHHHHHHHHHHHHHHhhhhhhhhHHHHHHHHhhhhhhhhhhhHhhHHHHHHHHHHHH
Q 003570 280 MLKQKIRDQGDEIQFFKKHAEDLEIYIKQLTEDCQVLEQENQCLTSKLEKIQQQESMKSRECIESLATIKELESQSERLE 359 (810)
Q Consensus 280 ~LkqKI~DL~~Eie~ykkerEeLe~~ieQL~~D~E~LkqEN~~ls~kLEq~q~Qeql~~~EcS~~~~~i~eLe~qve~LE 359 (810)
.++.|......-++...++...+..+++..+...+.+++.|-=+....+ -...+..+.+|+.|+..+.
T Consensus 257 ~l~~k~~~a~~a~~fL~~qL~~l~~~L~~aE~~l~~fr~~~~~~d~~~e------------a~~~l~~~~~l~~ql~~l~ 324 (726)
T PRK09841 257 NIARQAAQDSQSLEFLQRQLPEVRSELDQAEEKLNVYRQQRDSVDLNLE------------AKAVLEQIVNVDNQLNELT 324 (726)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCCCHH------------HHHHHHHHHHHHHHHHHHH
Confidence 4555555555566666677788888888888888888887732221111 1223455788888888888
Q ss_pred HHHHHHhHHHhHhhHhHHHHHHHHHHHHHHHH
Q 003570 360 DKIKQQSEEYSESLISINELECQVKELKRELD 391 (810)
Q Consensus 360 ~eLk~q~~efSesL~tI~eLE~qv~sLeeEl~ 391 (810)
.++......|.+---.|..|..++..|.++++
T Consensus 325 ~~~~~l~~~~~~~hP~v~~l~~~~~~L~~~~~ 356 (726)
T PRK09841 325 FREAEISQLYKKDHPTYRALLEKRQTLEQERK 356 (726)
T ss_pred HHHHHHHHHhcccCchHHHHHHHHHHHHHHHH
Confidence 88888788888888888888888776655443
No 206
>PLN03229 acetyl-coenzyme A carboxylase carboxyl transferase subunit alpha; Provisional
Probab=48.23 E-value=6.1e+02 Score=31.83 Aligned_cols=194 Identities=22% Similarity=0.226 Sum_probs=0.0
Q ss_pred CCCCCCC---CcchHHHHHHHHH---HHHhhhhhhHHHHHHHHHHHHHHhhhhhh------HHHHHHhhHHhhh------
Q 003570 101 SPDDNLG---SDGSVEKLKNEIA---VMMRQVELSELELLSLRKQVAKESKRAQD------QTRQIISLSSERD------ 162 (810)
Q Consensus 101 ssed~l~---sd~~iEkLKsE~~---~l~Rq~e~selELQtLRKQi~KESKRgqd------LsrEv~~lk~ERD------ 162 (810)
.|.+-+| -.+.||+||.|+. +=+=++--+.--|.+||-+|+|- ..++ |+-.+-.|+.|=+
T Consensus 450 ~s~~~~~~~~L~e~IeKLk~E~d~e~S~A~~~~gLk~kL~~Lr~E~sKa--~~~~~~~~~~L~eK~~kLk~Efnkkl~ea 527 (762)
T PLN03229 450 ESSSKPSELALNEMIEKLKKEIDLEYTEAVIAMGLQERLENLREEFSKA--NSQDQLMHPVLMEKIEKLKDEFNKRLSRA 527 (762)
T ss_pred cccCCCCChHHHHHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHhc--ccccccccHHHHHHHHHHHHHHHHhhhcc
Q ss_pred ----HHHHHHHHhhhhhh----hhHHHHhhhhhhhhhhHHHHH-----HHHHHhhhhhh------------cchhhh---
Q 003570 163 ----ALTIECEQLRKQNS----IDIAEIERRLQSEEHLKFLQE-----EIREELNYEKE------------VSAHLR--- 214 (810)
Q Consensus 163 ----~Lk~EcEqLksqk~----~~ea~~~~~lq~e~D~~~llE-----Elr~EL~yEKe------------lNaNL~--- 214 (810)
.||...+-||..-. ...+....+|..+.+- .+.+ +++.++.-++. ++-+|+
T Consensus 528 ~n~p~lk~Kle~Lk~~~~~~~~s~g~~~a~~Lk~ei~k-ki~e~~~~~~~kek~ea~~aev~~~g~s~~~~~~~~lkeki 606 (762)
T PLN03229 528 PNYLSLKYKLDMLNEFSRAKALSEKKSKAEKLKAEINK-KFKEVMDRPEIKEKMEALKAEVASSGASSGDELDDDLKEKV 606 (762)
T ss_pred cccHHHHHHHHHHHHHHHhhhhcccchhhhhhhHHHHH-HHHHhcccHHHHHHHHHHHHHHHhcCccccCCCCHHHHHHH
Q ss_pred hhhhhhhhhhHHHHHHHHHHHHHHHHhhhhh--------hhhhhhhhhhhhhhhhHHHHHHHHhhccC-chhhHHHHHHH
Q 003570 215 LQLEKTQDSNAELILAVKDLNEMLEQKNMEI--------SSLSSKLEESKLVREDQLALEALAKERNK-DKEVDMLKQKI 285 (810)
Q Consensus 215 LQLqKTQESNsELilAVqDLeeMLEqKn~EI--------s~ls~~~~e~~~~~edq~ale~Lvke~~~-~~E~~~LkqKI 285 (810)
..+++-=+.=+|=|+-.-+|+-| +.++.++ ..++.++. +|..-++.... +--...||.||
T Consensus 607 ~~~~~Ei~~eie~v~~S~gL~~~-~~~k~e~a~~~~~p~~~~k~KIe----------~L~~eIkkkIe~av~ss~LK~k~ 675 (762)
T PLN03229 607 EKMKKEIELELAGVLKSMGLEVI-GVTKKNKDTAEQTPPPNLQEKIE----------SLNEEINKKIERVIRSSDLKSKI 675 (762)
T ss_pred HHHHHHHHHHHHHHHhccCchhh-hhhhhhhcccccCCChhhHHHHH----------HHHHHHHHHHHHHhcchhHHHHH
Q ss_pred HHhhhHHHHhh--------hhHHHHHHHHHH
Q 003570 286 RDQGDEIQFFK--------KHAEDLEIYIKQ 308 (810)
Q Consensus 286 ~DL~~Eie~yk--------kerEeLe~~ieQ 308 (810)
..|--|+..+- ...|-|+.+|.|
T Consensus 676 E~Lk~Evaka~~~pd~~~k~kieal~~qik~ 706 (762)
T PLN03229 676 ELLKLEVAKASKTPDVTEKEKIEALEQQIKQ 706 (762)
T ss_pred HHHHHHHHhcCCCCCcchHHHHHHHHHHHHH
No 207
>PF03962 Mnd1: Mnd1 family; InterPro: IPR005647 This family of proteins includes meiotic nuclear division protein 1 (MND1) from Saccharomyces cerevisiae (Baker's yeast). The mnd1 protein forms a complex with hop2 to promote homologous chromosome pairing and meiotic double-strand break repair [].
Probab=47.93 E-value=2.3e+02 Score=29.10 Aligned_cols=87 Identities=23% Similarity=0.298 Sum_probs=41.6
Q ss_pred hhhhhhHHHHHHHHHHHHHHHHHHHHhhhccCchhHHHHhhHHHHHHHHHHHHHHHHhhhhHHHHHhhHHHHHHHHHHHH
Q 003570 587 NRERDDLEKKFASAKQEAAKAHEELISMRSLKGENEMLIGNLQAEVENLKVQQNKLQNSLIEEKLEKDNLAKQVFQLKDE 666 (810)
Q Consensus 587 ~~er~el~~~~a~~kkeae~~~~EL~~m~~~kdEkE~~i~~LqsE~e~lk~Q~~~LK~sL~~ee~EKe~l~kQv~qLk~e 666 (810)
....+.|..+++.+++........|...+.-..+-+.+-. +..++..|+.++..|+.-|. .=...--..|.+++.+
T Consensus 68 ~~~~~~l~~~~~~~~~~i~~l~~~i~~~~~~r~~~~eR~~-~l~~l~~l~~~~~~l~~el~---~~~~~Dp~~i~~~~~~ 143 (188)
T PF03962_consen 68 QNKLEKLQKEIEELEKKIEELEEKIEEAKKGREESEEREE-LLEELEELKKELKELKKELE---KYSENDPEKIEKLKEE 143 (188)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccccHHHHH-HHHHHHHHHHHHHHHHHHHH---HHHhcCHHHHHHHHHH
Confidence 3344455555555555555555555555444444433322 44455556666555554443 1111222345555555
Q ss_pred HHhhHHHHHhh
Q 003570 667 LQKKKEEINRT 677 (810)
Q Consensus 667 L~KKe~~~~~~ 677 (810)
+..--++.+.|
T Consensus 144 ~~~~~~~anrw 154 (188)
T PF03962_consen 144 IKIAKEAANRW 154 (188)
T ss_pred HHHHHHHHHHH
Confidence 55555555443
No 208
>PRK11519 tyrosine kinase; Provisional
Probab=47.85 E-value=5.9e+02 Score=30.88 Aligned_cols=100 Identities=16% Similarity=0.240 Sum_probs=66.7
Q ss_pred HHHHHHHhhhHHHHhhhhHHHHHHHHHHHHHHHHHHHhhhhhhhhHHHHHHHHhhhhhhhhhhhHhhHHHHHHHHHHHHH
Q 003570 281 LKQKIRDQGDEIQFFKKHAEDLEIYIKQLTEDCQVLEQENQCLTSKLEKIQQQESMKSRECIESLATIKELESQSERLED 360 (810)
Q Consensus 281 LkqKI~DL~~Eie~ykkerEeLe~~ieQL~~D~E~LkqEN~~ls~kLEq~q~Qeql~~~EcS~~~~~i~eLe~qve~LE~ 360 (810)
+..|......-++...++...+..+++..+..++.+++.|--+....+ -.+.+..+.+++.|+..++.
T Consensus 258 ~~~k~~~a~~a~~fL~~ql~~l~~~L~~aE~~l~~fr~~~~~vd~~~e------------a~~~l~~~~~l~~ql~~l~~ 325 (719)
T PRK11519 258 IERKSEEASKSLAFLAQQLPEVRSRLDVAENKLNAFRQDKDSVDLPLE------------AKAVLDSMVNIDAQLNELTF 325 (719)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCchHH------------HHHHHHHHHHHHHHHHHHHH
Confidence 334444444556666677778888888888888888887764432211 12234557788888888888
Q ss_pred HHHHHhHHHhHhhHhHHHHHHHHHHHHHHHHH
Q 003570 361 KIKQQSEEYSESLISINELECQVKELKRELDK 392 (810)
Q Consensus 361 eLk~q~~efSesL~tI~eLE~qv~sLeeEl~~ 392 (810)
++...+..|.+---.|-.|..+...|+.+++.
T Consensus 326 ~~~~l~~~y~~~hP~v~~l~~~~~~L~~~~~~ 357 (719)
T PRK11519 326 KEAEISKLYTKEHPAYRTLLEKRKALEDEKAK 357 (719)
T ss_pred HHHHHHHHhcccCcHHHHHHHHHHHHHHHHHH
Confidence 88888877877777777777776666554443
No 209
>COG2433 Uncharacterized conserved protein [Function unknown]
Probab=47.34 E-value=2.5e+02 Score=34.24 Aligned_cols=103 Identities=28% Similarity=0.433 Sum_probs=51.8
Q ss_pred hHHHHHHHHHHHHHHHHHHhHHHhHhhHhHHHHHHHHHHHHHHHHHHHH------HHHhhHHHHHhhhHHHHHHHHHHHH
Q 003570 347 TIKELESQSERLEDKIKQQSEEYSESLISINELECQVKELKRELDKQAQ------EFEDDIDAVTHAKTEQEQRAIRAEE 420 (810)
Q Consensus 347 ~i~eLe~qve~LE~eLk~q~~efSesL~tI~eLE~qv~sLeeEl~~Qaq------~fe~Dldam~~~k~EQEqRAi~AEe 420 (810)
-|..++..|++|+.+.+.+..+.-+.=..|..|++++.++..++..... ..+..+.
T Consensus 423 ~i~~~~~~ve~l~~e~~~L~~~~ee~k~eie~L~~~l~~~~r~~~~~~~~~rei~~~~~~I~------------------ 484 (652)
T COG2433 423 RIKKLEETVERLEEENSELKRELEELKREIEKLESELERFRREVRDKVRKDREIRARDRRIE------------------ 484 (652)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHH------------------
Confidence 3444445555555555444444444445677777777777766653221 2222233
Q ss_pred HHHHHhhhhhhhHHHHHHHHHHHH----HHhhhh---hhhhHHHHHHHHHHHHH
Q 003570 421 ELRKTRWKNTVTAERLQDEFRRLS----VDMASK---FDENEKLAMKAMTEANE 467 (810)
Q Consensus 421 aLrKtR~~na~taErLQeEf~~LS----~qmsSt---~eeNEklt~kA~~Ease 467 (810)
.|++--.+..-.++.|..+|..|- ...++. +-.=|++|..|++++.+
T Consensus 485 ~L~~~L~e~~~~ve~L~~~l~~l~k~~~lE~sG~g~pvk~ve~~t~~~Ie~~e~ 538 (652)
T COG2433 485 RLEKELEEKKKRVEELERKLAELRKMRKLELSGKGTPVKVVEKLTLEAIEEAEE 538 (652)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhcCCCcceehhhhhhHHHHHhHHH
Confidence 344444444555555655555543 111111 23446667777766554
No 210
>TIGR03319 YmdA_YtgF conserved hypothetical protein YmdA/YtgF.
Probab=46.68 E-value=2.8e+02 Score=32.66 Aligned_cols=25 Identities=20% Similarity=0.361 Sum_probs=10.1
Q ss_pred hHHHhhHHHHHHHHHHhhhhchhhh
Q 003570 501 SDQLEQKDKQIQKMYLELDHSSSQL 525 (810)
Q Consensus 501 ~~qld~k~k~ie~m~~Ele~kS~ql 525 (810)
...|+.+...++.-..+|+.+.++|
T Consensus 89 ee~Lekr~e~Lekre~~Le~ke~~L 113 (514)
T TIGR03319 89 EETLDRKMESLDKKEENLEKKEKEL 113 (514)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3334444444444444444444444
No 211
>KOG0982 consensus Centrosomal protein Nuf [Cell cycle control, cell division, chromosome partitioning; Cytoskeleton]
Probab=46.43 E-value=5.7e+02 Score=30.35 Aligned_cols=160 Identities=16% Similarity=0.178 Sum_probs=83.8
Q ss_pred chhhhhhhhhhhhhhHHHHHHHHHHHHHHHHhhhhhhhhhhhhhhhhhhhhhHHHHHHHHhhccCchhhHHHHHHHHHhh
Q 003570 210 SAHLRLQLEKTQDSNAELILAVKDLNEMLEQKNMEISSLSSKLEESKLVREDQLALEALAKERNKDKEVDMLKQKIRDQG 289 (810)
Q Consensus 210 NaNL~LQLqKTQESNsELilAVqDLeeMLEqKn~EIs~ls~~~~e~~~~~edq~ale~Lvke~~~~~E~~~LkqKI~DL~ 289 (810)
+-||.-.+|-+-++|.||-.-+-+|-...++.-.+-...+..+. ++.-. -...--++..|.|..
T Consensus 299 ~Enlqmr~qqleeentelRs~~arlksl~dklaee~qr~sd~LE-------------~lrlq---l~~eq~l~~rm~d~L 362 (502)
T KOG0982|consen 299 KENLQMRDQQLEEENTELRSLIARLKSLADKLAEEDQRSSDLLE-------------ALRLQ---LICEQKLRVRMNDIL 362 (502)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhHHHHHH-------------HHHHH---HHHHHHHHHHHHHHH
Confidence 45888888899999999998888886666554444322221111 11000 011122333444433
Q ss_pred hHHHHhhhhHHHHHHHHHHHHHHHHHHHhhhhhhhhHHHHHHHHhhhhhhhhhhhHhhHHHHHHHHHHHHHHHHHHhHHH
Q 003570 290 DEIQFFKKHAEDLEIYIKQLTEDCQVLEQENQCLTSKLEKIQQQESMKSRECIESLATIKELESQSERLEDKIKQQSEEY 369 (810)
Q Consensus 290 ~Eie~ykkerEeLe~~ieQL~~D~E~LkqEN~~ls~kLEq~q~Qeql~~~EcS~~~~~i~eLe~qve~LE~eLk~q~~ef 369 (810)
.- +-++++.-..-|+.|-+..+.|+..-. .|--+-..+.- ..+..|++++++.+..+
T Consensus 363 rr---fq~ekeatqELieelrkelehlr~~kl------------------~~a~p~rgrsS--aRe~eleqevkrLrq~n 419 (502)
T KOG0982|consen 363 RR---FQEEKEATQELIEELRKELEHLRRRKL------------------VLANPVRGRSS--AREIELEQEVKRLRQPN 419 (502)
T ss_pred HH---HHHhhHHHHHHHHHHHHHHHHHHHHHH------------------HhhccccCchh--HHHHHHHHHHHHhcccc
Confidence 22 446777777778888887777665222 12111111110 33444555555555444
Q ss_pred hHhhHhHHHHHHHHHHHH-------HHHHHHHHHHHhhHHHHHhhh
Q 003570 370 SESLISINELECQVKELK-------RELDKQAQEFEDDIDAVTHAK 408 (810)
Q Consensus 370 SesL~tI~eLE~qv~sLe-------eEl~~Qaq~fe~Dldam~~~k 408 (810)
-.---.=.+|..+|-+|. .=...-+..|.++++.|.++-
T Consensus 420 r~l~eqneelngtilTls~q~lkn~ha~~~~~~Slaaeid~~sqde 465 (502)
T KOG0982|consen 420 RILSEQNEELNGTILTLSTQFLKNWHATFSLFFSLAAEIDEMSQDE 465 (502)
T ss_pred chhhhhhhhhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHhHHH
Confidence 333333333444444443 334456788999998776653
No 212
>PF03954 Lectin_N: Hepatic lectin, N-terminal domain; InterPro: IPR005640 Animal lectins display a wide variety of architectures. They are classified according to the carbohydrate-recognition domain (CRD) of which there are two main types, S-type and C-type. C-type lectins display a wide range of specificities. They require Ca2+ for their activity They are found predominantly but not exclusively in vertebrates. This entry presents N-terminal domain, which is found in C-type lectins.; GO: 0005529 sugar binding, 0016020 membrane
Probab=46.31 E-value=1.1e+02 Score=30.93 Aligned_cols=80 Identities=28% Similarity=0.449 Sum_probs=56.3
Q ss_pred HhhHHHHHHHHHHHHHHHHHHhHHHhH----hhHhHHHHH-------HHHHHHHHHHHHHHHHHHhhHHHHHhhhHHHHH
Q 003570 345 LATIKELESQSERLEDKIKQQSEEYSE----SLISINELE-------CQVKELKRELDKQAQEFEDDIDAVTHAKTEQEQ 413 (810)
Q Consensus 345 ~~~i~eLe~qve~LE~eLk~q~~efSe----sL~tI~eLE-------~qv~sLeeEl~~Qaq~fe~Dldam~~~k~EQEq 413 (810)
++.|-=+=+|-.+|..+|...+.-||+ .+..|..|- ..|.+|+-.+++|.+.+-+|-..|.
T Consensus 47 LV~IcVigsQ~~qlq~dl~tLretfsNFssst~aEvqaL~S~G~sl~~kVtSLea~lEkqqQeLkAdhS~ll-------- 118 (138)
T PF03954_consen 47 LVVICVIGSQNSQLQRDLRTLRETFSNFSSSTLAEVQALSSQGGSLQDKVTSLEAKLEKQQQELKADHSTLL-------- 118 (138)
T ss_pred HHHHHhhcCccHHHHHHHHHHHHHHhcccHHHHHHHHHHHhccccHHhHcccHHHHHHHHHHHHhhhHHHHH--------
Confidence 445555558889999999999999994 455565554 4566666677776666666654443
Q ss_pred HHHHHHHHHHHHhhhhhhhHHHHHHHHHHHHHHhhh
Q 003570 414 RAIRAEEELRKTRWKNTVTAERLQDEFRRLSVDMAS 449 (810)
Q Consensus 414 RAi~AEeaLrKtR~~na~taErLQeEf~~LS~qmsS 449 (810)
.-|.++=.+++.||+||+.
T Consensus 119 -----------------lhvk~~~~DLr~LsCQma~ 137 (138)
T PF03954_consen 119 -----------------LHVKQFPKDLRSLSCQMAF 137 (138)
T ss_pred -----------------HHHHHHHHHHhhhhhhhhc
Confidence 2356778899999999973
No 213
>PF03148 Tektin: Tektin family; InterPro: IPR000435 Tektin heteropolymers form unique protofilaments of flagellar microtubules []. The proteins are predicted to form extended rods composed of 2 alpha- helical segments (~180 residues long) capable of forming coiled coils, interrupted by non-helical linkers []. The 2 segments are similar in sequence, indicating a gene duplication event. Along each tektin rod, cysteine residues occur with a periodicity of ~8nm, coincident with the axial repeat of tubulin dimers in microtubules []. It is proposed that the assembly of tektin heteropolymers produces filaments with repeats of 8, 16, 24, 32, 40, 48 and 96nm, generating the basis for the complex spatial arrangements of axonemal components [].; GO: 0000226 microtubule cytoskeleton organization, 0005874 microtubule
Probab=45.72 E-value=4.9e+02 Score=29.36 Aligned_cols=307 Identities=21% Similarity=0.268 Sum_probs=0.0
Q ss_pred hHHHhHhhHhHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHhhhHHHHHHHHHHHHHHHHHhhhhhhhHHHHHHHHHHHHH
Q 003570 366 SEEYSESLISINELECQVKELKRELDKQAQEFEDDIDAVTHAKTEQEQRAIRAEEELRKTRWKNTVTAERLQDEFRRLSV 445 (810)
Q Consensus 366 ~~efSesL~tI~eLE~qv~sLeeEl~~Qaq~fe~Dldam~~~k~EQEqRAi~AEeaLrKtR~~na~taErLQeEf~~LS~ 445 (810)
.....++-..+..==..|.....+|.........++++|...|..-|. ||..++..-+|+.++|.-==.|...
T Consensus 38 ~~~q~~~~~~L~~Ri~di~~wk~eL~~~l~~~~~Ei~~L~~~K~~le~-------aL~~~~~pl~i~~ecL~~R~~R~~~ 110 (384)
T PF03148_consen 38 KWDQYDSNKRLRQRIRDIRFWKNELERELEELDEEIDLLEEEKRRLEK-------ALEALRKPLSIAQECLSLREKRPGI 110 (384)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-------HHHHhcCcHHHHHHHHHHHhCCCCc
Q ss_pred HhhhhhhhhHHHHHHHHHHHHHHHhhHHHHHHHHHHhHHHHhhhhhhhhccHHHHhHHHhhHHH--HHHHHHHhhhhchh
Q 003570 446 DMASKFDENEKLAMKAMTEANEQRMQKAHLEEMLQKANDELSLIKDQNGVKLQELSDQLEQKDK--QIQKMYLELDHSSS 523 (810)
Q Consensus 446 qmsSt~eeNEklt~kA~~EaseLR~qk~~LEemLqk~neeL~~i~dq~e~kl~eL~~qld~k~k--~ie~m~~Ele~kS~ 523 (810)
.+. +|.=|.-. +.|+.-++.-+..|+..++.|.++|+. .++=-..|..-+.-|.. .|+.....|...|.
T Consensus 111 dlv--~D~ve~eL---~kE~~li~~~~~lL~~~l~~~~eQl~~----lr~ar~~Le~Dl~dK~~A~~ID~~~~~L~~~S~ 181 (384)
T PF03148_consen 111 DLV--HDEVEKEL---LKEVELIENIKRLLQRTLEQAEEQLRL----LRAARYRLEKDLSDKFEALEIDTQCLSLNNNST 181 (384)
T ss_pred ccC--CCcHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHhCCCccC
Q ss_pred hhhHHhhhHHHHHHhHHHHHHHHHHHHHHHHHhhhhhhhcccccCCCCCCcccchhhHHHhhhhhhhhhHHHHHHHHHHH
Q 003570 524 QLIDEHKSEAQKHEALSTEIHMLRTEIEKLRKEQYNLSEHGKRRDDNKPKVSTGETDMLIQKWNRERDDLEKKFASAKQE 603 (810)
Q Consensus 524 qle~~kk~~ee~~~a~s~EI~~Lk~eie~L~~e~~~l~e~~~~~d~e~~k~s~~e~~~~lq~~~~er~el~~~~a~~kke 603 (810)
-+ +....-.-+..+..--..-..--......
T Consensus 182 ~i-------------------------------------------------~~~~~~~r~~~~~~tp~~W~~~s~~ni~~ 212 (384)
T PF03148_consen 182 NI-------------------------------------------------SYKPGSTRIPKNSSTPESWEEFSNENIQR 212 (384)
T ss_pred CC-------------------------------------------------cccCCcccccccCCChHHHHHHHHHHHHH
Q ss_pred HHHHHHHHHhhhccCchhHHHHhhHHHHHHHHHHHHHH----HHhhhhHHHHHhhHHHHHHHHHHHHHHhhHHHHHhhhh
Q 003570 604 AAKAHEELISMRSLKGENEMLIGNLQAEVENLKVQQNK----LQNSLIEEKLEKDNLAKQVFQLKDELQKKKEEINRTGK 679 (810)
Q Consensus 604 ae~~~~EL~~m~~~kdEkE~~i~~LqsE~e~lk~Q~~~----LK~sL~~ee~EKe~l~kQv~qLk~eL~KKe~~~~~~ek 679 (810)
|++....=..||. .+-+.|..=...++.|++. |.....+-+.-|.+|.-|..+...++..-+..+..+++
T Consensus 213 a~~e~~~S~~LR~------~i~~~l~~~~~dl~~Q~~~vn~al~~Ri~et~~ak~~Le~ql~~~~~ei~~~e~~i~~L~~ 286 (384)
T PF03148_consen 213 AEKERQSSAQLRE------DIDSILEQTANDLRAQADAVNAALRKRIHETQEAKNELEWQLKKTLQEIAEMEKNIEDLEK 286 (384)
T ss_pred HHHHHHHHHHHHH------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHH
Q ss_pred cccccCCCCchhhhhHHHHHHHhhhhhhhhhhhhcccchhchHHHHHhhhcccccccccccccccCCCCCCchHHHHHHH
Q 003570 680 GLKKYGGPVSDAQMTSMKERLRKGQKKLNKAELETSDNRIAVDEYRHMIRKGETCSEKGVTALASHSSDEGNFTEVLMEV 759 (810)
Q Consensus 680 klk~s~g~~sd~~~~~~~~~ikeg~ik~~e~ale~St~~~~~~~~~~~~~~~~~~~e~e~~~~~~~~~~~~~~~~l~~e~ 759 (810)
.+.+- +|.+|+..|-|+.=+.+.+++ . -.+..-..|+.|+
T Consensus 287 ai~~k-----------------~~~lkvaqTRL~~R~~RP~vE---------------------l--crD~~q~~L~~Ev 326 (384)
T PF03148_consen 287 AIRDK-----------------EGPLKVAQTRLENRTQRPNVE---------------------L--CRDPPQYGLIEEV 326 (384)
T ss_pred HHHHH-----------------HhhHHHHHHHHhhHhcCCchH---------------------H--HHhhHHHHHHHHH
Q ss_pred HHHHHHhHhHHHHHHHHHhhhccc
Q 003570 760 SLLKEKNKRMETELKEMQERYSEI 783 (810)
Q Consensus 760 ~~lkern~~me~elkem~~rysei 783 (810)
..|.+-...+...|.+-+.-|..+
T Consensus 327 ~~l~~~i~~L~~~L~~a~~~l~~L 350 (384)
T PF03148_consen 327 KELRESIEALQEKLDEAEASLQKL 350 (384)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
No 214
>TIGR03319 YmdA_YtgF conserved hypothetical protein YmdA/YtgF.
Probab=45.61 E-value=5.8e+02 Score=30.16 Aligned_cols=37 Identities=24% Similarity=0.364 Sum_probs=23.2
Q ss_pred hccHHHHhHHHhhHHHHHHHHHHhhhhchhhhhHHhh
Q 003570 494 GVKLQELSDQLEQKDKQIQKMYLELDHSSSQLIDEHK 530 (810)
Q Consensus 494 e~kl~eL~~qld~k~k~ie~m~~Ele~kS~qle~~kk 530 (810)
+.+|.+.-+.|+.+...+++-...|+.+.++|....+
T Consensus 75 e~rL~qrE~rL~qRee~Lekr~e~Lekre~~Le~ke~ 111 (514)
T TIGR03319 75 RNELQRLERRLLQREETLDRKMESLDKKEENLEKKEK 111 (514)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4445555566777777777777777777666654443
No 215
>PF10168 Nup88: Nuclear pore component; InterPro: IPR019321 Nup88 can be divided into two structural domains; the N-terminal two-thirds of the protein have no obvious structural motifs. It is, however, where it binds to Nup98; one of the components of the nuclear pore. The C-terminal end is a predicted coiled-coil domain []. Nup88 is over expressed in tumour cells [].
Probab=45.36 E-value=6.8e+02 Score=30.92 Aligned_cols=42 Identities=19% Similarity=0.303 Sum_probs=19.5
Q ss_pred HhhhhchhhhhHHhhhHHHHHHhHHHHHHHHHHHHHHHHHhh
Q 003570 516 LELDHSSSQLIDEHKSEAQKHEALSTEIHMLRTEIEKLRKEQ 557 (810)
Q Consensus 516 ~Ele~kS~qle~~kk~~ee~~~a~s~EI~~Lk~eie~L~~e~ 557 (810)
.-+....-.|..+.|.-.+-.+.+..+++.|++.|+.++...
T Consensus 621 ~~l~~~~P~LS~AEr~~~~EL~~~~~~l~~l~~si~~lk~k~ 662 (717)
T PF10168_consen 621 QLLNSQLPVLSEAEREFKKELERMKDQLQDLKASIEQLKKKL 662 (717)
T ss_pred HHHhccCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333333344444444433334455555555555555554443
No 216
>PF05529 Bap31: B-cell receptor-associated protein 31-like ; InterPro: IPR008417 Bap31 is a polytopic integral protein of the endoplasmic reticulum membrane and a substrate of caspase-8. Bap31 is cleaved within its cytosolic domain, generating pro-apoptotic p20 Bap31 [].; GO: 0006886 intracellular protein transport, 0005783 endoplasmic reticulum, 0016021 integral to membrane
Probab=45.18 E-value=1.1e+02 Score=30.74 Aligned_cols=36 Identities=31% Similarity=0.334 Sum_probs=21.5
Q ss_pred HHHHHHHHHHHHHhhhhHHHHHhhHHHHHHHHHHHH
Q 003570 631 EVENLKVQQNKLQNSLIEEKLEKDNLAKQVFQLKDE 666 (810)
Q Consensus 631 E~e~lk~Q~~~LK~sL~~ee~EKe~l~kQv~qLk~e 666 (810)
+...+.....+||.-|..-+.+.+.|++|...|..|
T Consensus 155 ~~~~~~~ei~~lk~el~~~~~~~~~LkkQ~~~l~~e 190 (192)
T PF05529_consen 155 ENKKLSEEIEKLKKELEKKEKEIEALKKQSEGLQKE 190 (192)
T ss_pred hhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 333444555555555556777777777777666543
No 217
>PF05483 SCP-1: Synaptonemal complex protein 1 (SCP-1); InterPro: IPR008827 Synaptonemal complex protein 1 (SCP-1) is the major component of the transverse filaments of the synaptonemal complex. Synaptonemal complexes are structures that are formed between homologous chromosomes during meiotic prophase [].; GO: 0007130 synaptonemal complex assembly, 0000795 synaptonemal complex
Probab=44.97 E-value=7.2e+02 Score=31.11 Aligned_cols=191 Identities=20% Similarity=0.274 Sum_probs=100.8
Q ss_pred HHHHHHHHHHHHHhHHHhHhhHhHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHhhhHHHHHHHHHHHHHHHHHhhhhhhh
Q 003570 353 SQSERLEDKIKQQSEEYSESLISINELECQVKELKRELDKQAQEFEDDIDAVTHAKTEQEQRAIRAEEELRKTRWKNTVT 432 (810)
Q Consensus 353 ~qve~LE~eLk~q~~efSesL~tI~eLE~qv~sLeeEl~~Qaq~fe~Dldam~~~k~EQEqRAi~AEeaLrKtR~~na~t 432 (810)
-||+.|-.+|.+=.--+-+-....+.|....+.|-.+-.+=+-.+-.- .+-......|+.|..+.=+.|-.+-----+.
T Consensus 471 kQVeeLKtELE~EkLKN~ELt~~~nkLslEkk~laQE~~~~~~elKk~-qedi~~~k~qee~~~kqie~Lee~~~~Lrne 549 (786)
T PF05483_consen 471 KQVEELKTELEQEKLKNTELTVNCNKLSLEKKQLAQETSDMALELKKQ-QEDINNSKKQEEKMLKQIENLEETNTQLRNE 549 (786)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344444444443333333444455555555555554444333332221 1122234566777665555554433333456
Q ss_pred HHHHHHHHHHHHHHhhhhhhhhHHHHHHHHHHHHHHHhhHHHHHHHHHHhHHHHhhhhhhhhccHHH----HhHHHhhHH
Q 003570 433 AERLQDEFRRLSVDMASKFDENEKLAMKAMTEANEQRMQKAHLEEMLQKANDELSLIKDQNGVKLQE----LSDQLEQKD 508 (810)
Q Consensus 433 aErLQeEf~~LS~qmsSt~eeNEklt~kA~~EaseLR~qk~~LEemLqk~neeL~~i~dq~e~kl~e----L~~qld~k~ 508 (810)
++-+-+++..-..+|-++++..|--+.--.-|......|-..||..+....-.+.- +.-+--.|+. |-.++-.-.
T Consensus 550 les~~eel~~k~~Ev~~kl~ksEen~r~~e~e~~~k~kq~k~lenk~~~LrKqvEn-k~K~ieeLqqeNk~LKKk~~aE~ 628 (786)
T PF05483_consen 550 LESVKEELKQKGEEVKCKLDKSEENARSIECEILKKEKQMKILENKCNNLRKQVEN-KNKNIEELQQENKALKKKITAES 628 (786)
T ss_pred HHHHHHHHHHHHHHHHHHhhhHHHhhHHHHHHHhhhHHHHHHHHHHHHHHHHHHHH-HHhHHHHHHHHHHHHHHHHHHHH
Confidence 67888899999999999999988888877788887777777777655444332221 0000001111 222233333
Q ss_pred HHHHHHHHhhhhchhhhhHHhhhHHHHHHhHHHHHHH
Q 003570 509 KQIQKMYLELDHSSSQLIDEHKSEAQKHEALSTEIHM 545 (810)
Q Consensus 509 k~ie~m~~Ele~kS~qle~~kk~~ee~~~a~s~EI~~ 545 (810)
+++-..-..+...-.++++.+++-++.+..|..+|.-
T Consensus 629 kq~~~~eikVn~L~~E~e~~kk~~eE~~~~~~keie~ 665 (786)
T PF05483_consen 629 KQSNVYEIKVNKLQEELENLKKKHEEETDKYQKEIES 665 (786)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHH
Confidence 3333333334444455666666666666666666653
No 218
>PF15294 Leu_zip: Leucine zipper
Probab=44.78 E-value=2.8e+02 Score=30.75 Aligned_cols=44 Identities=23% Similarity=0.346 Sum_probs=32.7
Q ss_pred hhHHHHhhhhHHHHHHHHHHHHHHHHHHHhhhhhhhhHHHHHHH
Q 003570 289 GDEIQFFKKHAEDLEIYIKQLTEDCQVLEQENQCLTSKLEKIQQ 332 (810)
Q Consensus 289 ~~Eie~ykkerEeLe~~ieQL~~D~E~LkqEN~~ls~kLEq~q~ 332 (810)
..||...+.+++.|...+.-++..|-..-.++-.|...|...+.
T Consensus 131 ~kEi~rLq~EN~kLk~rl~~le~~at~~l~Ek~kl~~~L~~lq~ 174 (278)
T PF15294_consen 131 NKEIDRLQEENEKLKERLKSLEKQATSALDEKSKLEAQLKELQD 174 (278)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34677777788888888888888888888877777777766443
No 219
>PF02403 Seryl_tRNA_N: Seryl-tRNA synthetase N-terminal domain; InterPro: IPR015866 The aminoacyl-tRNA synthetases (6.1.1. from EC) catalyse the attachment of an amino acid to its cognate transfer RNA molecule in a highly specific two-step reaction. These proteins differ widely in size and oligomeric state, and have limited sequence homology []. The 20 aminoacyl-tRNA synthetases are divided into two classes, I and II. Class I aminoacyl-tRNA synthetases contain a characteristic Rossman fold catalytic domain and are mostly monomeric []. Class II aminoacyl-tRNA synthetases share an anti-parallel beta-sheet fold flanked by alpha-helices [], and are mostly dimeric or multimeric, containing at least three conserved regions [, , ]. However, tRNA binding involves an alpha-helical structure that is conserved between class I and class II synthetases. In reactions catalysed by the class I aminoacyl-tRNA synthetases, the aminoacyl group is coupled to the 2'-hydroxyl of the tRNA, while, in class II reactions, the 3'-hydroxyl site is preferred. The synthetases specific for arginine, cysteine, glutamic acid, glutamine, isoleucine, leucine, methionine, tyrosine, tryptophan and valine belong to class I synthetases. The synthetases specific for alanine, asparagine, aspartic acid, glycine, histidine, lysine, phenylalanine, proline, serine, and threonine belong to class-II synthetases []. Based on their mode of binding to the tRNA acceptor stem, both classes of tRNA synthetases have been subdivided into three subclasses, designated 1a, 1b, 1c and 2a, 2b, 2c. This entry represents the N-terminal domain of Seryl-tRNA synthetase, which consists of two helices in a long alpha-hairpin. Seryl-tRNA synthetase (6.1.1.11 from EC) exists as monomer and belongs to class IIa [].; GO: 0000166 nucleotide binding, 0004828 serine-tRNA ligase activity, 0005524 ATP binding, 0006434 seryl-tRNA aminoacylation, 0005737 cytoplasm; PDB: 3QO8_A 3QO5_A 3QO7_A 3QNE_A 3LSQ_A 3LSS_A 2DQ3_B 1SET_A 1SER_A 1SRY_B ....
Probab=44.41 E-value=76 Score=28.85 Aligned_cols=57 Identities=26% Similarity=0.435 Sum_probs=38.4
Q ss_pred HhhHHHHHHHHHHHHHHHHhhhhHHHH---HhhHHHHHHHHHHHHHHhhHHHHHhhhhcc
Q 003570 625 IGNLQAEVENLKVQQNKLQNSLIEEKL---EKDNLAKQVFQLKDELQKKKEEINRTGKGL 681 (810)
Q Consensus 625 i~~LqsE~e~lk~Q~~~LK~sL~~ee~---EKe~l~kQv~qLk~eL~KKe~~~~~~ekkl 681 (810)
.+.|+.+++.|+.+.|.+-..+..--. +.+.|..++..++.+++..+..+..++..+
T Consensus 38 ~r~l~~~~e~lr~~rN~~sk~I~~~~~~~~~~~~l~~e~~~lk~~i~~le~~~~~~e~~l 97 (108)
T PF02403_consen 38 RRELQQELEELRAERNELSKEIGKLKKAGEDAEELKAEVKELKEEIKELEEQLKELEEEL 97 (108)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHCHTTCCTHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHhHHHHHHHHHhhCcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 356677777777777766655444333 566777777778877777777777666554
No 220
>COG4942 Membrane-bound metallopeptidase [Cell division and chromosome partitioning]
Probab=44.31 E-value=5.9e+02 Score=29.87 Aligned_cols=89 Identities=18% Similarity=0.323 Sum_probs=65.9
Q ss_pred HHHHHHHHHHHHHHhhhhhhhhHHHHHHHHhhhhhhhhhhhHhhHHHHHHHHHHHHHHHHHHhHHHhHhhHhHHHHHHHH
Q 003570 304 IYIKQLTEDCQVLEQENQCLTSKLEKIQQQESMKSRECIESLATIKELESQSERLEDKIKQQSEEYSESLISINELECQV 383 (810)
Q Consensus 304 ~~ieQL~~D~E~LkqEN~~ls~kLEq~q~Qeql~~~EcS~~~~~i~eLe~qve~LE~eLk~q~~efSesL~tI~eLE~qv 383 (810)
.+++|...+++.+.+ ++...+ .+-+.+...|.+++..+.+++.+|.....+....-..|..++..+
T Consensus 38 ~~l~q~q~ei~~~~~-------~i~~~~-------~~~~kL~~~lk~~e~~i~~~~~ql~~s~~~l~~~~~~I~~~~~~l 103 (420)
T COG4942 38 KQLKQIQKEIAALEK-------KIREQQ-------DQRAKLEKQLKSLETEIASLEAQLIETADDLKKLRKQIADLNARL 103 (420)
T ss_pred HHHHHHHHHHHHHHH-------HHHHHH-------HHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHhhHHHHHHHH
Confidence 566777777777666 443322 233556677888888888888888888888888888888888888
Q ss_pred HHHHHHHHHHHHHHHhhHHHHHh
Q 003570 384 KELKRELDKQAQEFEDDIDAVTH 406 (810)
Q Consensus 384 ~sLeeEl~~Qaq~fe~Dldam~~ 406 (810)
..|+.+-..|-..+..=|.++.+
T Consensus 104 ~~l~~q~r~qr~~La~~L~A~~r 126 (420)
T COG4942 104 NALEVQEREQRRRLAEQLAALQR 126 (420)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHh
Confidence 88887777777778877877776
No 221
>KOG1853 consensus LIS1-interacting protein NUDE [Cytoskeleton]
Probab=44.17 E-value=5e+02 Score=29.03 Aligned_cols=105 Identities=16% Similarity=0.189 Sum_probs=57.4
Q ss_pred ccHHHHhHHHhhHHHHHHHHHHhhhhchhhhhHHhhhHHHHHHhHHHHHHHHHHHHHHHHHhhhhhhhcccccCCCCCCc
Q 003570 495 VKLQELSDQLEQKDKQIQKMYLELDHSSSQLIDEHKSEAQKHEALSTEIHMLRTEIEKLRKEQYNLSEHGKRRDDNKPKV 574 (810)
Q Consensus 495 ~kl~eL~~qld~k~k~ie~m~~Ele~kS~qle~~kk~~ee~~~a~s~EI~~Lk~eie~L~~e~~~l~e~~~~~d~e~~k~ 574 (810)
++|.+|-++..--...-++|..|++---..++++.-+.-.+..+|..+.-.+++--+.|.+-+-.|- |+ -+|+|-.|
T Consensus 52 sqL~q~etrnrdl~t~nqrl~~E~e~~Kek~e~q~~q~y~q~s~Leddlsqt~aikeql~kyiReLE-Qa-NDdLErak- 128 (333)
T KOG1853|consen 52 SQLDQLETRNRDLETRNQRLTTEQERNKEKQEDQRVQFYQQESQLEDDLSQTHAIKEQLRKYIRELE-QA-NDDLERAK- 128 (333)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-Hh-ccHHHHhh-
Confidence 3445555555555556677777777777777777766666666666665555555554444444331 11 12333322
Q ss_pred ccchhhHHHhhhhhhhhhHHHHHHHHHHHH
Q 003570 575 STGETDMLIQKWNRERDDLEKKFASAKQEA 604 (810)
Q Consensus 575 s~~e~~~~lq~~~~er~el~~~~a~~kkea 604 (810)
--|.+++.+--...+---..+|.|.-|.
T Consensus 129 --Rati~sleDfeqrLnqAIErnAfLESEL 156 (333)
T KOG1853|consen 129 --RATIYSLEDFEQRLNQAIERNAFLESEL 156 (333)
T ss_pred --hhhhhhHHHHHHHHHHHHHHHHHHHHHh
Confidence 2345555555555555555556555554
No 222
>PF02841 GBP_C: Guanylate-binding protein, C-terminal domain; InterPro: IPR003191 Guanylate-binding protein is a GTPase that is induced by interferon (IFN)-gamma. GTPases induced by IFN-gamma are key to the protective immunity against microbial and viral pathogens. These GTPases are classified into three groups: the small 47-kd GTPases, the Mx proteins, and the large 65- to 67-kd GTPases. Guanylate-binding proteins (GBP) fall into the last class. In humans, there are seven GBPs (hGBP1-7) []. Structurally, hGBP1 consists of two domains: a compact globular N-terminal domain harbouring the GTPase function (IPR015894 from INTERPRO), and an alpha-helical finger-like C-terminal domain. Human GBP1 is secreted from cells without the need of a leader peptide, and has been shown to exhibit antiviral activity against Vesicular stomatitis virus and Encephalomyocarditis virus, as well as being able to regulate the inhibition of proliferation and invasion of endothelial cells in response to IFN-gamma [].; GO: 0003924 GTPase activity, 0005525 GTP binding; PDB: 1DG3_A 2D4H_A 2B8W_B 2B92_A 2BC9_A 1F5N_A.
Probab=43.97 E-value=4.4e+02 Score=28.35 Aligned_cols=146 Identities=18% Similarity=0.267 Sum_probs=81.9
Q ss_pred HHHhhHHHHHhhhHHHHHH---HHHHHHHHHHHhhhhhhhHHHHHHHHHHHHHHhhhhhhhhHHHHHHHHHHHHHHHhhH
Q 003570 396 EFEDDIDAVTHAKTEQEQR---AIRAEEELRKTRWKNTVTAERLQDEFRRLSVDMASKFDENEKLAMKAMTEANEQRMQK 472 (810)
Q Consensus 396 ~fe~Dldam~~~k~EQEqR---Ai~AEeaLrKtR~~na~taErLQeEf~~LS~qmsSt~eeNEklt~kA~~EaseLR~qk 472 (810)
+|...+..+.....++... =+.|++.|..---........+ .+......+.|+.+...-..+..++.+.
T Consensus 149 g~~~~~~~~~~~~~~Y~~~p~Kg~ka~evL~~fl~~~~~~~~~i--------lq~d~~L~~~ek~~~~~~~k~e~~e~e~ 220 (297)
T PF02841_consen 149 GYQLFLKELDELEKEYEQEPGKGVKAEEVLQEFLQSKESMENSI--------LQADQQLTEKEKEIEEEQAKAEAAEKEK 220 (297)
T ss_dssp HHHHHHHHHHHHHHHHHHSS---TTHHHHHHHHHHHCHHHHHHH--------HHH-TTS-HHHHHHHHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHHHhhcCCCCccHHHHHHHHHHHHHHHHHHH--------HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3555555555555555554 3457777766533322111111 2344455556665555555555667777
Q ss_pred HHHHHHHHHhHHHHhhhhhhhhccHHHHhHHHhhHHHHHHHHHHhhhhchhhhhHHhhhHHHHHHhHHHHHHHHHHHHHH
Q 003570 473 AHLEEMLQKANDELSLIKDQNGVKLQELSDQLEQKDKQIQKMYLELDHSSSQLIDEHKSEAQKHEALSTEIHMLRTEIEK 552 (810)
Q Consensus 473 ~~LEemLqk~neeL~~i~dq~e~kl~eL~~qld~k~k~ie~m~~Ele~kS~qle~~kk~~ee~~~a~s~EI~~Lk~eie~ 552 (810)
..+++........+..-...|+.++..|..++..-..++.+ |.+..-. ...+.+..-..+.|..++..++.+|..
T Consensus 221 ~~l~e~~~~~~~~le~~~~~~ee~~~~L~ekme~e~~~~~~---e~e~~l~--~k~~eq~~~l~e~~~~~~~~l~~ei~~ 295 (297)
T PF02841_consen 221 EKLEEKQKEQEQMLEQQERSYEEHIKQLKEKMEEEREQLLQ---EQERLLE--QKLQEQEELLKEGFQEEAEKLQKEIQD 295 (297)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHH--HHHHHHHHHHHCT-HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHH--HHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 78887777777777777777888888888776665553333 2222110 111222233456688999999999887
Q ss_pred HH
Q 003570 553 LR 554 (810)
Q Consensus 553 L~ 554 (810)
|.
T Consensus 296 L~ 297 (297)
T PF02841_consen 296 LQ 297 (297)
T ss_dssp HH
T ss_pred cC
Confidence 63
No 223
>PF03962 Mnd1: Mnd1 family; InterPro: IPR005647 This family of proteins includes meiotic nuclear division protein 1 (MND1) from Saccharomyces cerevisiae (Baker's yeast). The mnd1 protein forms a complex with hop2 to promote homologous chromosome pairing and meiotic double-strand break repair [].
Probab=43.58 E-value=3.8e+02 Score=27.54 Aligned_cols=52 Identities=17% Similarity=0.334 Sum_probs=39.4
Q ss_pred HHHHHHHhhhhchhhhhHHhhhHHHHHHhHHHHHHHHHHHHHHHHHhhhhhh
Q 003570 510 QIQKMYLELDHSSSQLIDEHKSEAQKHEALSTEIHMLRTEIEKLRKEQYNLS 561 (810)
Q Consensus 510 ~ie~m~~Ele~kS~qle~~kk~~ee~~~a~s~EI~~Lk~eie~L~~e~~~l~ 561 (810)
.++.+..++.....+|....+.+-+.+..+..++..++..+.+-|..+..|-
T Consensus 111 ~l~~l~~~~~~l~~el~~~~~~Dp~~i~~~~~~~~~~~~~anrwTDNI~~l~ 162 (188)
T PF03962_consen 111 ELEELKKELKELKKELEKYSENDPEKIEKLKEEIKIAKEAANRWTDNIFSLK 162 (188)
T ss_pred HHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHHHhhHHHHH
Confidence 3344444555556677777788889999999999999999999888887763
No 224
>PF09728 Taxilin: Myosin-like coiled-coil protein; InterPro: IPR019132 Taxilin contains an extraordinarily long coiled-coil domain in its C-terminal half and is ubiquitously expressed. It is a novel binding partner of several syntaxin family members and is possibly involved in Ca(2+)-dependent exocytosis in neuroendocrine cells []. Gamma-taxilin, described as leucine zipper protein Factor Inhibiting ATF4-mediated Transcription (FIAT), localises to the nucleus in osteoblasts and dimerises with ATF4 to form inactive dimers, thus inhibiting ATF4-mediated transcription [].
Probab=43.05 E-value=5e+02 Score=28.70 Aligned_cols=50 Identities=28% Similarity=0.359 Sum_probs=38.4
Q ss_pred HHHhhHHHHHHHHHHHHHHHHhhhhHHHHHhhHHHHHHHHHHHHHHhhHH
Q 003570 623 MLIGNLQAEVENLKVQQNKLQNSLIEEKLEKDNLAKQVFQLKDELQKKKE 672 (810)
Q Consensus 623 ~~i~~LqsE~e~lk~Q~~~LK~sL~~ee~EKe~l~kQv~qLk~eL~KKe~ 672 (810)
.-|..|-.|...++..|..--..|..=-.|+..+.+++..++..+.+-+.
T Consensus 251 Kk~kklEKE~~~~k~k~e~~n~~l~~m~eer~~~~~~~~~~~~k~~kLe~ 300 (309)
T PF09728_consen 251 KKIKKLEKENQTWKSKWEKSNKALIEMAEERQKLEKELEKLKKKIEKLEK 300 (309)
T ss_pred HHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45667777888888888888888888888888888888777776665543
No 225
>PF06005 DUF904: Protein of unknown function (DUF904); InterPro: IPR009252 Cell division protein ZapB is a non-essential, abundant cell division factor that is required for proper Z-ring formation. It is recruited early to the divisome by direct interaction with FtsZ, stimulating Z-ring assembly and thereby promoting cell division earlier in the cell cycle. Its recruitment to the Z-ring requires functional FtsA or ZipA.; GO: 0000917 barrier septum formation, 0043093 cytokinesis by binary fission, 0005737 cytoplasm; PDB: 2JEE_A.
Probab=42.49 E-value=1.1e+02 Score=27.46 Aligned_cols=49 Identities=33% Similarity=0.317 Sum_probs=31.7
Q ss_pred HHhhHHHHHHHHHHHHHHHHhhhhHHHHHhhHHHHHHHHHHHHHHhhHHHHHhhhh
Q 003570 624 LIGNLQAEVENLKVQQNKLQNSLIEEKLEKDNLAKQVFQLKDELQKKKEEINRTGK 679 (810)
Q Consensus 624 ~i~~LqsE~e~lk~Q~~~LK~sL~~ee~EKe~l~kQv~qLk~eL~KKe~~~~~~ek 679 (810)
.|..|+-+++.|+.+.+.|+ .+.+.|+...-+|+.+-..-.+-+.++-.
T Consensus 19 ti~~Lq~e~eeLke~n~~L~-------~e~~~L~~en~~L~~e~~~~~~rl~~LL~ 67 (72)
T PF06005_consen 19 TIALLQMENEELKEKNNELK-------EENEELKEENEQLKQERNAWQERLRSLLG 67 (72)
T ss_dssp HHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHhHH-------HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45667777777777777776 56667777777777555554444444433
No 226
>KOG0993 consensus Rab5 GTPase effector Rabaptin-5 [Intracellular trafficking, secretion, and vesicular transport]
Probab=42.10 E-value=6.6e+02 Score=29.82 Aligned_cols=200 Identities=22% Similarity=0.274 Sum_probs=107.9
Q ss_pred HHHHHHHHHHhHHHhHhhHhHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHhhhHHHHHHHHHHHHHHHHHhhhhhhhHHH
Q 003570 356 ERLEDKIKQQSEEYSESLISINELECQVKELKRELDKQAQEFEDDIDAVTHAKTEQEQRAIRAEEELRKTRWKNTVTAER 435 (810)
Q Consensus 356 e~LE~eLk~q~~efSesL~tI~eLE~qv~sLeeEl~~Qaq~fe~Dldam~~~k~EQEqRAi~AEeaLrKtR~~na~taEr 435 (810)
..|-.+=+.+.++.-..+.+--+|+--++...+++..|...+.... .+.|+=-+-.+| ++-+
T Consensus 295 ~~lqkegrqlqrdlE~~~~~r~ele~~~~qs~ed~t~q~~~ll~~~-----q~sE~ll~tlq~-------------~iSq 356 (542)
T KOG0993|consen 295 FILQKEGRQLQRDLEELIETRAELEHTEQQSQEDITVQRAQLLEER-----QHSEDLLVTLQA-------------EISQ 356 (542)
T ss_pred HHHHHHhHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHH-----HhhHHHHHHHHH-------------HHHH
Confidence 3333333344455555556666677667777777777766654432 222222222222 3445
Q ss_pred HHHHHHHHHHHhhhhhhhhHHHHHHHHHHHHHHHhhHHHH------HHHHHHhHHHHhhhhhhhhccHHHHhHHHhhHHH
Q 003570 436 LQDEFRRLSVDMASKFDENEKLAMKAMTEANEQRMQKAHL------EEMLQKANDELSLIKDQNGVKLQELSDQLEQKDK 509 (810)
Q Consensus 436 LQeEf~~LS~qmsSt~eeNEklt~kA~~EaseLR~qk~~L------EemLqk~neeL~~i~dq~e~kl~eL~~qld~k~k 509 (810)
+|.++. .||+-++-+.|.++ -|.+.||..|-.| +-.+|.+.. .. .-+-+++|...+-.
T Consensus 357 aq~~vq---~qma~lv~a~e~i~----~e~~rl~q~nd~l~~~~~l~t~~Qq~e~--~~----lp~ave~l~ql~~~--- 420 (542)
T KOG0993|consen 357 AQSEVQ---KQMARLVVASETIA----DEDSRLRQINDLLTTVGELETQVQQAEV--QN----LPAAVEQLAQLYKQ--- 420 (542)
T ss_pred HHHHHH---HHHHHHHHHHHHHH----HHHHHHHHHHHhhhhccccccchhHhhh--hc----chhhHHHHHHHHHH---
Confidence 565544 56777776666654 4677777776543 222221110 00 00111122111111
Q ss_pred HHHHHHHhhhhchhhhhHHhhhHHHHHHhHHHHHHHHHHHHHHHHHhhhhhhhcccccCCCCCCcccchhhHHHhhhhhh
Q 003570 510 QIQKMYLELDHSSSQLIDEHKSEAQKHEALSTEIHMLRTEIEKLRKEQYNLSEHGKRRDDNKPKVSTGETDMLIQKWNRE 589 (810)
Q Consensus 510 ~ie~m~~Ele~kS~qle~~kk~~ee~~~a~s~EI~~Lk~eie~L~~e~~~l~e~~~~~d~e~~k~s~~e~~~~lq~~~~e 589 (810)
-.-.+.+--.--+-+.+.|..||+-|+..|++-+.-..+|- -.++....+
T Consensus 421 -----------~r~~~~~~l~a~ehv~e~l~~ei~~L~eqle~e~~~~~~le-------------------~ql~~~ve~ 470 (542)
T KOG0993|consen 421 -----------RRTSLQQELDASEHVQEDLVKEIQSLQEQLEKERQSEQELE-------------------WQLDDDVEQ 470 (542)
T ss_pred -----------HHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-------------------HHHHHHHHH
Confidence 11112222233456778999999999999998776555552 223333334
Q ss_pred hhhHHHHHHHHHHHHHHHH---HHHHhhhccCc
Q 003570 590 RDDLEKKFASAKQEAAKAH---EELISMRSLKG 619 (810)
Q Consensus 590 r~el~~~~a~~kkeae~~~---~EL~~m~~~kd 619 (810)
-..+..-|+++|-+.+... +-|+.|.++|+
T Consensus 471 c~~~~aS~~slk~e~erl~qq~eqi~~~~~~Ka 503 (542)
T KOG0993|consen 471 CSNCDASFASLKVEPERLHQQCEQIFCMNCLKA 503 (542)
T ss_pred HHHHHHHHHHHhccHHHHHHHHHHHHHHhHHHh
Confidence 4567778999999999885 55777877664
No 227
>cd07598 BAR_FAM92 The Bin/Amphiphysin/Rvs (BAR) domain of Family with sequence similarity 92 (FAM92). BAR domains are dimerization, lipid binding and curvature sensing modules found in many different proteins with diverse functions including organelle biogenesis, membrane trafficking or remodeling, and cell division and migration. This group is composed of proteins from the family with sequence similarity 92 (FAM92), which were originally identified by the presence of the unknown domain DUF1208. This domain shows similarity to the BAR domains of sorting nexins. Mammals contain at least two member types, FAM92A and FAM92B, which may exist in many variants. The Xenopus homolog of FAM92A1, xVAP019, is essential for embryo survival and cell differentiation. FAM92A1 may be involved in regulating cell proliferation and apoptosis. BAR domains form dimers that bind to membranes, induce membrane bending and curvature, and may also be involved in protein-protein interactions.
Probab=41.70 E-value=4.4e+02 Score=27.68 Aligned_cols=91 Identities=18% Similarity=0.274 Sum_probs=69.7
Q ss_pred hhhHHHHHHHHHhhhHHHHhhhhHHHHHHHHHHHHHHHHHHH-hhhhhhhhHHHHHHHHhhhhhhhhhhhHhhHHHHH-H
Q 003570 276 KEVDMLKQKIRDQGDEIQFFKKHAEDLEIYIKQLTEDCQVLE-QENQCLTSKLEKIQQQESMKSRECIESLATIKELE-S 353 (810)
Q Consensus 276 ~E~~~LkqKI~DL~~Eie~ykkerEeLe~~ieQL~~D~E~Lk-qEN~~ls~kLEq~q~Qeql~~~EcS~~~~~i~eLe-~ 353 (810)
+.+..|++-+..||..+..|=+.+-.|.-.-.++..-+..|- .||+.|+..|.+ -+...+.|.++- .
T Consensus 11 ~~i~~lE~hl~~l~~~~~~lv~k~~~L~~~~~~fak~~~~la~~E~~~L~~~L~~-----------lae~~~~i~d~~q~ 79 (211)
T cd07598 11 ERITNVEKHFGELCQDFAAYTRKTARLRDKGDELAKSINAYADTENPSLKQGLKN-----------FAECLAALQDYRQA 79 (211)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHhccCHHHHHHHHH-----------HHHHHHHHHHHHHH
Confidence 467889999999999999999999999999999988776664 457777777766 224456777776 8
Q ss_pred HHHHHHHHHHHHhHHHhHhhHhHH
Q 003570 354 QSERLEDKIKQQSEEYSESLISIN 377 (810)
Q Consensus 354 qve~LE~eLk~q~~efSesL~tI~ 377 (810)
|+.+++.++-+-=++|..-++.+.
T Consensus 80 qv~~l~~~v~epLk~Y~~l~k~~k 103 (211)
T cd07598 80 EVERLEAKVVQPLALYGTICKHAR 103 (211)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 999999888776666666554443
No 228
>KOG0018 consensus Structural maintenance of chromosome protein 1 (sister chromatid cohesion complex Cohesin, subunit SMC1) [Cell cycle control, cell division, chromosome partitioning]
Probab=41.63 E-value=9.4e+02 Score=31.49 Aligned_cols=46 Identities=39% Similarity=0.474 Sum_probs=40.1
Q ss_pred HHHHHHHHHhHhHHHHHHHHHhhhccccccccccccchhhhHHHHhhhhc
Q 003570 757 MEVSLLKEKNKRMETELKEMQERYSEISLKFAEVEGERQQLVMTVRNLKN 806 (810)
Q Consensus 757 ~e~~~lkern~~me~elkem~~ryseisl~faevegerqqlvm~~rnlk~ 806 (810)
.++..|+++--.+..+|++.+.|-. ...+|++.+.-|.|-+++++-
T Consensus 652 k~~~~L~~~k~rl~eel~ei~~~~~----e~~~v~~~i~~le~~~~~~~~ 697 (1141)
T KOG0018|consen 652 KEVDQLKEKKERLLEELKEIQKRRK----EVSSVESKIHGLEMRLKYSKL 697 (1141)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhhh----hHHHHHHHHHHHHHHHHHHHH
Confidence 4788899998999999999999555 778999999999999998763
No 229
>PF01920 Prefoldin_2: Prefoldin subunit; InterPro: IPR002777 Prefoldin (PFD) is a chaperone that interacts exclusively with type II chaperonins, hetero-oligomers lacking an obligate co-chaperonin that are found only in eukaryotes (chaperonin-containing T-complex polypeptide-1 (CCT)) and archaea. Eukaryotic PFD is a multi-subunit complex containing six polypeptides in the molecular mass range of 14-23 kDa. In archaea, on the other hand, PFD is composed of two types of subunits, two alpha and four beta. The six subunits associate to form two back-to-back up-and-down eight-stranded barrels, from which hang six coiled coils. Each subunit contributes one (beta subunits) or two (alpha subunits) beta hairpin turns to the barrels. The coiled coils are formed by the N and C termini of an individual subunit. Overall, this unique arrangement resembles a jellyfish. The eukaryotic PFD hexamer is composed of six different subunits; however, these can be grouped into two alpha-like (PFD3 and -5) and four beta-like (PFD1, -2, -4, and -6) subunits based on amino acid sequence similarity with their archaeal counterparts. Eukaryotic PFD has a six-legged structure similar to that seen in the archaeal homologue [, ]. This family contains the archaeal beta subunit, eukaryotic prefoldin subunits 1, 2, 4 and 6. Eukaryotic PFD has been shown to bind both actin and tubulin co-translationally. The chaperone then delivers the target protein to CCT, interacting with the chaperonin through the tips of the coiled coils. No authentic target proteins of any archaeal PFD have been identified, to date.; GO: 0051082 unfolded protein binding, 0006457 protein folding, 0016272 prefoldin complex; PDB: 2ZDI_B 3AEI_B 2ZQM_A 1FXK_A.
Probab=40.75 E-value=2.6e+02 Score=24.74 Aligned_cols=41 Identities=17% Similarity=0.274 Sum_probs=24.3
Q ss_pred HHHHHHHHHHHHHHHHhhHHHHHhhhHHHHHHHHHHHHHHH
Q 003570 383 VKELKRELDKQAQEFEDDIDAVTHAKTEQEQRAIRAEEELR 423 (810)
Q Consensus 383 v~sLeeEl~~Qaq~fe~Dldam~~~k~EQEqRAi~AEeaLr 423 (810)
+..+...|..+...+..+++.+......-+.+....+..|+
T Consensus 60 ~~~~~~~L~~~~~~~~~~i~~l~~~~~~l~~~l~~~~~~l~ 100 (106)
T PF01920_consen 60 KEEAIEELEERIEKLEKEIKKLEKQLKYLEKKLKELKKKLY 100 (106)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45566666666666666666666666555555555544443
No 230
>PRK10361 DNA recombination protein RmuC; Provisional
Probab=40.27 E-value=7e+02 Score=29.62 Aligned_cols=49 Identities=14% Similarity=0.344 Sum_probs=28.7
Q ss_pred HHHHHHHHHHHHhHhHHHHHHHHHhhhccccccccccccchhhhHHHHhhhh
Q 003570 754 EVLMEVSLLKEKNKRMETELKEMQERYSEISLKFAEVEGERQQLVMTVRNLK 805 (810)
Q Consensus 754 ~l~~e~~~lkern~~me~elkem~~ryseisl~faevegerqqlvm~~rnlk 805 (810)
+|.+.+..+.+.-..+..-|...+..|....=++.. | |..|+-.++.|+
T Consensus 377 ~Lydkl~~f~~~~~klG~~L~~a~~~y~~A~~~L~~--G-rgnli~~a~~~k 425 (475)
T PRK10361 377 KLYDKMRLFVDDMSAIGQSLDKAQDNYRQAMKKLSS--G-RGNVLAQAEAFR 425 (475)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh--c-CCchHHHHHHHH
Confidence 344445555555666667777777777765544432 2 445666666665
No 231
>TIGR02977 phageshock_pspA phage shock protein A. Members of this family are the phage shock protein PspA, from the phage shock operon. This is a narrower family than the set of PspA and its homologs, sometimes several in a genome, as described by PFAM model pfam04012. PspA appears to maintain the protonmotive force under stress conditions that include overexpression of certain phage secretins, heat shock, ethanol, and protein export defects.
Probab=40.09 E-value=4.4e+02 Score=27.26 Aligned_cols=139 Identities=15% Similarity=0.209 Sum_probs=71.9
Q ss_pred hhhhhhhhhHHHHHHHHHHHHHHHHhhhhhhhhhhhhhhhhhhhhhHHHHHHHHhhccCchhhHHHHHHHHHhhhHHHHh
Q 003570 216 QLEKTQDSNAELILAVKDLNEMLEQKNMEISSLSSKLEESKLVREDQLALEALAKERNKDKEVDMLKQKIRDQGDEIQFF 295 (810)
Q Consensus 216 QLqKTQESNsELilAVqDLeeMLEqKn~EIs~ls~~~~e~~~~~edq~ale~Lvke~~~~~E~~~LkqKI~DL~~Eie~y 295 (810)
+|.+...+=+.++.--+-++--+++....+.++.....-.-..+.+.+|-.+|....... +.+..+...++..
T Consensus 39 ~l~~ar~~lA~~~a~~k~~e~~~~~~~~~~~~~~~~A~~Al~~G~EdLAr~Al~~k~~~~-------~~~~~l~~~~~~~ 111 (219)
T TIGR02977 39 TLVEVRTTSARTIADKKELERRVSRLEAQVADWQEKAELALSKGREDLARAALIEKQKAQ-------ELAEALERELAAV 111 (219)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHH-------HHHHHHHHHHHHH
Confidence 444555554555555555666666666666665554443333444556666666443333 3334444444445
Q ss_pred hhhHHHHHHHHHHHHHHHHHHHhhhhhhhhHHHHHHHHhhhhh--h--hhhhhHhhHHHHHHHHHHHHHH
Q 003570 296 KKHAEDLEIYIKQLTEDCQVLEQENQCLTSKLEKIQQQESMKS--R--ECIESLATIKELESQSERLEDK 361 (810)
Q Consensus 296 kkerEeLe~~ieQL~~D~E~LkqEN~~ls~kLEq~q~Qeql~~--~--EcS~~~~~i~eLe~qve~LE~e 361 (810)
+...+.|..++..|...++.++.--.-|..+....+.|.++.- . --++....+..++..|..+|..
T Consensus 112 ~~~v~~l~~~l~~L~~ki~~~k~k~~~l~ar~~~A~a~~~~~~~~~~~~~~~a~~~fer~e~ki~~~ea~ 181 (219)
T TIGR02977 112 EETLAKLQEDIAKLQAKLAEARARQKALAIRHQAASSRLDVRRQLDSGRSDEAMARFEQYERRVDELEAQ 181 (219)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCchhHHHHHHHHHHHHHHHHHH
Confidence 5555666666666666666666544445556666665552221 1 1123334444455555555544
No 232
>PF04582 Reo_sigmaC: Reovirus sigma C capsid protein; InterPro: IPR007662 Protein sigmaC in its native state was shown to be a homotrimer. It was demonstrated that the sigmaC subunits are not covalently bound via disulphide linkages and the formation of an intrachain disulphide bond between the two cysteine residues of the sigmaC polypeptide may have a negative effect on oligomer stability. The susceptibility of the trimer to pH, temperature, ionic strength, chemical denaturants and detergents indicates that hydrophobic interactions contribute much more to oligomer stability than do ionic interactions and hydrogen bonding [].; PDB: 2VRS_C 2JJL_A 2BSF_A 2BT7_A 2BT8_A.
Probab=39.97 E-value=47 Score=37.17 Aligned_cols=97 Identities=13% Similarity=0.188 Sum_probs=27.6
Q ss_pred CCCCcccchhhHHHhhhhhhhhhHHHHHHHHHHHHHHHHHHHHhhhccCchhHHHHhhHHHHHHHHHHHHHHHHhhhhHH
Q 003570 570 NKPKVSTGETDMLIQKWNRERDDLEKKFASAKQEAAKAHEELISMRSLKGENEMLIGNLQAEVENLKVQQNKLQNSLIEE 649 (810)
Q Consensus 570 e~~k~s~~e~~~~lq~~~~er~el~~~~a~~kkeae~~~~EL~~m~~~kdEkE~~i~~LqsE~e~lk~Q~~~LK~sL~~e 649 (810)
-.+...+.-....+..-+.+++.|.++|+.+..-.-..-..+..|...=..-...|..||+.|..+..-..+||.+++.-
T Consensus 59 SdLss~L~~l~~sl~~~~s~L~sLsstV~~lq~Sl~~lsssVs~lS~~ls~h~ssIS~Lqs~v~~lsTdvsNLksdVSt~ 138 (326)
T PF04582_consen 59 SDLSSDLQDLASSLADMTSELNSLSSTVTSLQSSLSSLSSSVSSLSSTLSDHSSSISDLQSSVSALSTDVSNLKSDVSTQ 138 (326)
T ss_dssp -----------------------------------------------------------HHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHhhhhhhhhhhhhHHHHHHhhhhhhhhhhhhhhhhhhh
Confidence 33334444445566777888888888888888888777778888888888888899999999999999999999888754
Q ss_pred HHHhhHHHHHHHHHHHHHHhhHHH
Q 003570 650 KLEKDNLAKQVFQLKDELQKKKEE 673 (810)
Q Consensus 650 e~EKe~l~kQv~qLk~eL~KKe~~ 673 (810)
.-+|..|++.++.-|..
T Consensus 139 -------aL~ItdLe~RV~~LEs~ 155 (326)
T PF04582_consen 139 -------ALNITDLESRVKALESG 155 (326)
T ss_dssp -------HHHHHHHHHHHHHHHTT
T ss_pred -------cchHhhHHHHHHHHhcC
Confidence 44666666655554444
No 233
>PRK12704 phosphodiesterase; Provisional
Probab=39.09 E-value=4.3e+02 Score=31.19 Aligned_cols=36 Identities=19% Similarity=0.327 Sum_probs=18.9
Q ss_pred cHHHHhHHHhhHHHHHHHHHHhhhhchhhhhHHhhh
Q 003570 496 KLQELSDQLEQKDKQIQKMYLELDHSSSQLIDEHKS 531 (810)
Q Consensus 496 kl~eL~~qld~k~k~ie~m~~Ele~kS~qle~~kk~ 531 (810)
+|..-...|+.+...+++-..+|+.+.+.|...++.
T Consensus 90 rL~~Ree~Le~r~e~Lekke~eL~~re~~Le~re~e 125 (520)
T PRK12704 90 RLLQKEENLDRKLELLEKREEELEKKEKELEQKQQE 125 (520)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344444555555555555555555555555444443
No 234
>PF12709 Kinetocho_Slk19: Central kinetochore-associated; InterPro: IPR024312 This is a family of proteins integrally involved in the central kinetochore. Slk19 is a yeast member and it may play an important role in the timing of nuclear migration. It may also participate, directly or indirectly, in the maintenance of centromeric tensile strength during mitotic stagnation, for instance during activation of checkpoint controls, when cells need to preserve nuclear integrity until cell cycle progression can be resumed [].
Probab=39.06 E-value=3.4e+02 Score=25.60 Aligned_cols=70 Identities=24% Similarity=0.360 Sum_probs=49.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhHHHHHhhhHHHHHHHHHHHHHHHHHhhhhhhhHHHHHHHHHHHHHHhhhhhhhhHHHH
Q 003570 379 LECQVKELKRELDKQAQEFEDDIDAVTHAKTEQEQRAIRAEEELRKTRWKNTVTAERLQDEFRRLSVDMASKFDENEKLA 458 (810)
Q Consensus 379 LE~qv~sLeeEl~~Qaq~fe~Dldam~~~k~EQEqRAi~AEeaLrKtR~~na~taErLQeEf~~LS~qmsSt~eeNEklt 458 (810)
|+.++.....+.+...+..+.||++.-+.|-|+.=.| |+|-+= -+.+..+..|..+..+.-++||.+-
T Consensus 2 l~~~~~~~~~ev~~~ve~vA~eLh~~YssKHE~KV~~------LKksYe------~rwek~v~~L~~e~~~l~~E~e~L~ 69 (87)
T PF12709_consen 2 LKKKLEESQKEVEKAVEKVARELHALYSSKHETKVKA------LKKSYE------ARWEKKVDELENENKALKRENEQLK 69 (87)
T ss_pred HHhHHhhhHHHHHHHHHHHHHHHHHHHhhHHHHHHHH------HHhhHH------HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 5678888899999999999999999999999887443 543221 1234555666666666666666554
Q ss_pred HH
Q 003570 459 MK 460 (810)
Q Consensus 459 ~k 460 (810)
.+
T Consensus 70 ~~ 71 (87)
T PF12709_consen 70 KK 71 (87)
T ss_pred HH
Confidence 43
No 235
>PF12761 End3: Actin cytoskeleton-regulatory complex protein END3
Probab=38.84 E-value=1.7e+02 Score=30.90 Aligned_cols=94 Identities=18% Similarity=0.269 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHhhhhhhhcccccCCCCCCcccchhhHHHhhhhhh-hhhHHHHHHHHHHHHHHHHH----HHHhhhc
Q 003570 542 EIHMLRTEIEKLRKEQYNLSEHGKRRDDNKPKVSTGETDMLIQKWNRE-RDDLEKKFASAKQEAAKAHE----ELISMRS 616 (810)
Q Consensus 542 EI~~Lk~eie~L~~e~~~l~e~~~~~d~e~~k~s~~e~~~~lq~~~~e-r~el~~~~a~~kkeae~~~~----EL~~m~~ 616 (810)
|+.+|+.|+..|....... +..... ...-....+++|.|.+..++ +|..+.+
T Consensus 97 EevrLkrELa~Le~~l~~~-----------------------~~~~~~~~~~~~~~~~lvk~e~EqLL~YK~~ql~~~~~ 153 (195)
T PF12761_consen 97 EEVRLKRELAELEEKLSKV-----------------------EQAAESRRSDTDSKPALVKREFEQLLDYKERQLRELEE 153 (195)
T ss_pred HHHHHHHHHHHHHHHHHHH-----------------------HHHHHhcccCCcchHHHHHHHHHHHHHHHHHHHHhhhc
Q ss_pred cCchhHHHHhhHHHHHHHHHHHHHHHHhhhhHHHHHhhHHHH
Q 003570 617 LKGENEMLIGNLQAEVENLKVQQNKLQNSLIEEKLEKDNLAK 658 (810)
Q Consensus 617 ~kdEkE~~i~~LqsE~e~lk~Q~~~LK~sL~~ee~EKe~l~k 658 (810)
-+.-...=++.+.-+|.+++.|.+-|...|...+.|-+.|+.
T Consensus 154 ~~~~~~~~l~~v~~Dl~~ie~QV~~Le~~L~~k~~eL~~L~q 195 (195)
T PF12761_consen 154 GRSKSGKNLKSVREDLDTIEEQVDGLESHLSSKKQELQQLRQ 195 (195)
T ss_pred cCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcC
No 236
>KOG0804 consensus Cytoplasmic Zn-finger protein BRAP2 (BRCA1 associated protein) [General function prediction only]
Probab=38.45 E-value=7.6e+02 Score=29.49 Aligned_cols=95 Identities=18% Similarity=0.202 Sum_probs=46.2
Q ss_pred hhhhhhhHhhHHHHHHHHHHHHHHHHHHhHHHhHhhHhHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHhhhHHHHHHHHH
Q 003570 338 SRECIESLATIKELESQSERLEDKIKQQSEEYSESLISINELECQVKELKRELDKQAQEFEDDIDAVTHAKTEQEQRAIR 417 (810)
Q Consensus 338 ~~EcS~~~~~i~eLe~qve~LE~eLk~q~~efSesL~tI~eLE~qv~sLeeEl~~Qaq~fe~Dldam~~~k~EQEqRAi~ 417 (810)
+-||.++.....++++-....|.++.+....+-.|-...+++. |+++ .+-++.++-..--.++++|.
T Consensus 360 ~~e~~~l~~~~~~~e~~kk~~e~k~~q~q~k~~k~~kel~~~~--------E~n~---~l~knq~vw~~kl~~~~e~~-- 426 (493)
T KOG0804|consen 360 ITEADSLKQESSDLEAEKKIVERKLQQLQTKLKKCQKELKEER--------EENK---KLIKNQDVWRGKLKELEERE-- 426 (493)
T ss_pred HHHHHhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--------HHHH---HHHhhHHHHHHHHHHHHHHH--
Confidence 3455555555566666666666666665554444333333332 2222 22233333322222222222
Q ss_pred HHHHHHHHhhhhhhhHHHHHHHHHHHHHHhhhh
Q 003570 418 AEEELRKTRWKNTVTAERLQDEFRRLSVDMASK 450 (810)
Q Consensus 418 AEeaLrKtR~~na~taErLQeEf~~LS~qmsSt 450 (810)
..++-.+.--..-||+-++.|-+.+.+.
T Consensus 427 -----~~~~~s~d~~I~dLqEQlrDlmf~le~q 454 (493)
T KOG0804|consen 427 -----KEALGSKDEKITDLQEQLRDLMFFLEAQ 454 (493)
T ss_pred -----HHHHHHHHHHHHHHHHHHHhHheehhhh
Confidence 2222234445667888888888877654
No 237
>PF00769 ERM: Ezrin/radixin/moesin family; InterPro: IPR011259 The ERM family consists of three closely-related proteins, ezrin, radixin and moesin []. Ezrin was first identified as a constituent of microvilli [], radixin as a barbed, end-capping actin-modulating protein from isolated junctional fractions [], and moesin as a heparin binding protein []. A tumour suppressor molecule responsible for neurofibromatosis type 2 (NF2) is highly similar to ERM proteins and has been designated merlin (moesin-ezrin-radixin-like protein). ERM molecules contain 3 domains, an N-terminal globular domain; an extended alpha-helical domain; and a charged C-terminal domain []. Ezrin, radixin and merlin also contain a polyproline region between the helical and C-terminal domains. The N-terminal domain is highly conserved, and is also found in merlin, band 4.1 proteins and members of the band 4.1 superfamily. ERM proteins crosslink actin filaments with plasma membranes. They co-localise with CD44 at actin filament-plasma membrane interaction sites, associating with CD44 via their N-terminal domains and with actin filaments via their C-terminal domains [].; GO: 0008092 cytoskeletal protein binding, 0005737 cytoplasm, 0019898 extrinsic to membrane; PDB: 2I1J_A 2I1K_A 1E5W_A 1EF1_C.
Probab=38.09 E-value=5.3e+02 Score=27.54 Aligned_cols=93 Identities=20% Similarity=0.325 Sum_probs=45.5
Q ss_pred hhhHHHHHHHHHHHHHHHHHHHhhhhhhhhHHHHHHHHhhhhhhhhhhhHhhHHHHHHHHHHHHHHHHHHhHHHhHhhHh
Q 003570 296 KKHAEDLEIYIKQLTEDCQVLEQENQCLTSKLEKIQQQESMKSRECIESLATIKELESQSERLEDKIKQQSEEYSESLIS 375 (810)
Q Consensus 296 kkerEeLe~~ieQL~~D~E~LkqEN~~ls~kLEq~q~Qeql~~~EcS~~~~~i~eLe~qve~LE~eLk~q~~efSesL~t 375 (810)
-+.+.+|+.+|.|+..+...-.. .|.. +..++..|+.+..+++.+-..+...-.+.--.
T Consensus 4 Er~k~Ele~rL~q~eee~~~a~~-------~L~e--------------~e~~a~~Leek~k~aeeea~~Le~k~~eaee~ 62 (246)
T PF00769_consen 4 EREKQELEERLRQMEEEMRRAQE-------ALEE--------------SEETAEELEEKLKQAEEEAEELEQKRQEAEEE 62 (246)
T ss_dssp HHHCHHHHHHHHHHHHHHHHHHH-------HHHH--------------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHHHHHHHH-------HHHH--------------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 35667777777777766554443 2322 34567777777777776665555544444444
Q ss_pred HHHHHHHHHHHHH---HHHHHHHHHHhhHHHHHhhhH
Q 003570 376 INELECQVKELKR---ELDKQAQEFEDDIDAVTHAKT 409 (810)
Q Consensus 376 I~eLE~qv~sLee---El~~Qaq~fe~Dldam~~~k~ 409 (810)
+..|+.+.....+ .|..+...+...+..|..+..
T Consensus 63 ~~rL~~~~~~~~eEk~~Le~e~~e~~~~i~~l~ee~~ 99 (246)
T PF00769_consen 63 KQRLEEEAEMQEEEKEQLEQELREAEAEIARLEEESE 99 (246)
T ss_dssp HHHHHH------------HHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4444443333222 233444444444444444333
No 238
>PF09304 Cortex-I_coil: Cortexillin I, coiled coil; InterPro: IPR015383 This domain is predominantly found in the actin-bundling protein cortexillin I from Dictyostelium discoideum (Slime mold). The domain has a structure consisting of an 18-heptad-repeat alpha-helical coiled-coil, and is a prerequisite for the assembly of Cortexillin I []. ; PDB: 1D7M_A.
Probab=38.03 E-value=3.9e+02 Score=26.07 Aligned_cols=88 Identities=19% Similarity=0.167 Sum_probs=48.7
Q ss_pred HHHHHHHHHhhhHHHHhhhhHHHHHHHHHHHHHHHHHHHhhhhhhhhHHHHHHHHhhhhhhhhhhhHhhHHHHHHHHHHH
Q 003570 279 DMLKQKIRDQGDEIQFFKKHAEDLEIYIKQLTEDCQVLEQENQCLTSKLEKIQQQESMKSRECIESLATIKELESQSERL 358 (810)
Q Consensus 279 ~~LkqKI~DL~~Eie~ykkerEeLe~~ieQL~~D~E~LkqEN~~ls~kLEq~q~Qeql~~~EcS~~~~~i~eLe~qve~L 358 (810)
..+..++.-|.++|+.++..++.|-.+=++|.--...|...|--.. .=|....+.|.++..+++.
T Consensus 12 ~el~n~La~Le~slE~~K~S~~eL~kqkd~L~~~l~~L~~q~~s~~--------------qr~~eLqaki~ea~~~le~- 76 (107)
T PF09304_consen 12 NELQNRLASLERSLEDEKTSQGELAKQKDQLRNALQSLQAQNASRN--------------QRIAELQAKIDEARRNLED- 76 (107)
T ss_dssp --HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--------------HHHHHHHHHHHHHHHHHHH-
T ss_pred HHHHHHHHHHHHHHHHHHhhHHHHHHhHHHHHHHHHHHHHHHHHHH--------------HHHHHHHHHHHHHHHHHHH-
Confidence 4567788888889999888888886666665544444444332222 2244455556666655554
Q ss_pred HHHHH-HHhHHHhHhhHhHHHHHH
Q 003570 359 EDKIK-QQSEEYSESLISINELEC 381 (810)
Q Consensus 359 E~eLk-~q~~efSesL~tI~eLE~ 381 (810)
+.--+ ....+++.+=+..+.||-
T Consensus 77 eK~ak~~l~~r~~k~~~dka~lel 100 (107)
T PF09304_consen 77 EKQAKLELESRLLKAQKDKAILEL 100 (107)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHhhhhHHHH
Confidence 33233 344445555555555543
No 239
>PF01166 TSC22: TSC-22/dip/bun family; InterPro: IPR000580 Several eukaryotic proteins are evolutionary related and are thought to be involved in transcriptional regulation. These proteins are highly similar in a region of about 50 residues that include a conserved leucine-zipper domain most probably involved in homo- or hetero-dimerisation. Proteins containing this signature include: Vertebrate protein TSC-22 [], a transcriptional regulator which seems to act on C-type natriuretic peptide (CNP) promoter. Mammalian protein DIP (DSIP-immunoreactive peptide) [], a protein whose function is not yet known. Drosophila protein bunched [] (gene bun) (also known as shortsighted), a probable transcription factor required for peripheral nervous system morphogenesis, eye development and oogenesis. Caenorhabditis elegans hypothetical protein T18D3.7. ; GO: 0003700 sequence-specific DNA binding transcription factor activity, 0006355 regulation of transcription, DNA-dependent; PDB: 1DIP_B.
Probab=38.00 E-value=49 Score=29.10 Aligned_cols=29 Identities=31% Similarity=0.491 Sum_probs=21.9
Q ss_pred hHHHHhhhhHHHHHHHHHHHHHHHHHHHh
Q 003570 290 DEIQFFKKHAEDLEIYIKQLTEDCQVLEQ 318 (810)
Q Consensus 290 ~Eie~ykkerEeLe~~ieQL~~D~E~Lkq 318 (810)
.|++..|...-+|..++.+|+.++..||+
T Consensus 14 EEVevLK~~I~eL~~~n~~Le~EN~~Lk~ 42 (59)
T PF01166_consen 14 EEVEVLKEQIAELEERNSQLEEENNLLKQ 42 (59)
T ss_dssp TSHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 46666666666777788888888888887
No 240
>KOG0982 consensus Centrosomal protein Nuf [Cell cycle control, cell division, chromosome partitioning; Cytoskeleton]
Probab=37.98 E-value=7.6e+02 Score=29.39 Aligned_cols=165 Identities=18% Similarity=0.165 Sum_probs=83.3
Q ss_pred HHHHHHHHHHHHHHHHhH-------HHhHhhHhHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHhhhHHHHHHHHHHHHHH
Q 003570 350 ELESQSERLEDKIKQQSE-------EYSESLISINELECQVKELKRELDKQAQEFEDDIDAVTHAKTEQEQRAIRAEEEL 422 (810)
Q Consensus 350 eLe~qve~LE~eLk~q~~-------efSesL~tI~eLE~qv~sLeeEl~~Qaq~fe~Dldam~~~k~EQEqRAi~AEeaL 422 (810)
++.-+|.-|+.+.....+ ..|.--...-.|..-+--|++...+|.-.-+.= -.+++-+-+++|
T Consensus 219 di~~kv~flerkv~eledd~~~~gd~~SrlkqEnlqLvhR~h~LEEq~reqElraeE~----------l~Ee~rrhrEil 288 (502)
T KOG0982|consen 219 DIERKVRFLERKVQELEDDQNIAGDRSSRLKQENLQLVHRYHMLEEQRREQELRAEES----------LSEEERRHREIL 288 (502)
T ss_pred hHHHHHHHHHHHHHHhhcchhccccchhHHHHHHHHHHHHHHHHHHHHHhhhhhHHHH----------HHHHHHHHHHHH
Confidence 455566666666655554 122223333445555555555444443222211 122333445567
Q ss_pred HHHhhhhhhhHHHHHHHHHHHHHHhhhhhhhhHHHHHHHHHHHHHHHhhHHHHHHHHHHhHHHHhhhhhhhhccHHHHhH
Q 003570 423 RKTRWKNTVTAERLQDEFRRLSVDMASKFDENEKLAMKAMTEANEQRMQKAHLEEMLQKANDELSLIKDQNGVKLQELSD 502 (810)
Q Consensus 423 rKtR~~na~taErLQeEf~~LS~qmsSt~eeNEklt~kA~~EaseLR~qk~~LEemLqk~neeL~~i~dq~e~kl~eL~~ 502 (810)
-|.-...++.+|+||=-++.|-.. |. .--..+..|+.+--.|++-.|+..+.|...++|-.+.
T Consensus 289 ~k~eReasle~Enlqmr~qqleee-------nt----elRs~~arlksl~dklaee~qr~sd~LE~lrlql~~e------ 351 (502)
T KOG0982|consen 289 IKKEREASLEKENLQMRDQQLEEE-------NT----ELRSLIARLKSLADKLAEEDQRSSDLLEALRLQLICE------ 351 (502)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH-------HH----HHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHH------
Confidence 777777777777777444333221 11 1234556677777777777777777777655543311
Q ss_pred HHhhHHHHHHHHHHhhhhchhhhhHHhhhHHHHHHhHHHHHHHHHHHH
Q 003570 503 QLEQKDKQIQKMYLELDHSSSQLIDEHKSEAQKHEALSTEIHMLRTEI 550 (810)
Q Consensus 503 qld~k~k~ie~m~~Ele~kS~qle~~kk~~ee~~~a~s~EI~~Lk~ei 550 (810)
-+.+.-+... -.+++.-+....+.+.++.+|.+.|+..+
T Consensus 352 -q~l~~rm~d~--------Lrrfq~ekeatqELieelrkelehlr~~k 390 (502)
T KOG0982|consen 352 -QKLRVRMNDI--------LRRFQEEKEATQELIEELRKELEHLRRRK 390 (502)
T ss_pred -HHHHHHHHHH--------HHHHHHhhHHHHHHHHHHHHHHHHHHHHH
Confidence 1222222222 22355555555666666666665555444
No 241
>PF07028 DUF1319: Protein of unknown function (DUF1319); InterPro: IPR010746 This entry is represented by Commelina yellow mottle virus, Orf1. The characteristics of the protein distribution suggest prophage matches in addition to the phage matches. This family contains a number of viral proteins of unknown function approximately 200 residues long. Family members seem to be restricted to badnaviruses.
Probab=37.81 E-value=3.1e+02 Score=27.40 Aligned_cols=66 Identities=18% Similarity=0.348 Sum_probs=52.3
Q ss_pred hhhhhhhhHhh----HHHHHHHHHHHHHHHHHHhHHHhHh----hHhHHHHHHHHHHHHHHHHHHHHHHHhhHH
Q 003570 337 KSRECIESLAT----IKELESQSERLEDKIKQQSEEYSES----LISINELECQVKELKRELDKQAQEFEDDID 402 (810)
Q Consensus 337 ~~~EcS~~~~~----i~eLe~qve~LE~eLk~q~~efSes----L~tI~eLE~qv~sLeeEl~~Qaq~fe~Dld 402 (810)
.+..|+.-... |.++...+..|..+|+..+++|... =.-|.+|=-.|..==+.+++|+..+-.|+.
T Consensus 47 ~lk~~~ki~~~Qr~~l~~l~~~l~~l~~eL~~Lr~~~l~rRPLtk~dVeeLV~~IseQPK~IEkQte~LteEL~ 120 (126)
T PF07028_consen 47 ELKNLSKIQESQRSELKELKQELDVLSKELQALRKEYLERRPLTKEDVEELVLRISEQPKFIEKQTEALTEELT 120 (126)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHhCcHHHHHHHHHHHHHHH
Confidence 34566666666 9999999999999999999999874 456777777777777888888888777764
No 242
>COG3074 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=37.47 E-value=1.7e+02 Score=26.99 Aligned_cols=57 Identities=23% Similarity=0.421 Sum_probs=43.5
Q ss_pred chHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHhhhhhhHHHHHHhhHHhhhHHHHHHHHhhh
Q 003570 110 GSVEKLKNEIAVMMRQVELSELELLSLRKQVAKESKRAQDQTRQIISLSSERDALTIECEQLRK 173 (810)
Q Consensus 110 ~~iEkLKsE~~~l~Rq~e~selELQtLRKQi~KESKRgqdLsrEv~~lk~ERD~Lk~EcEqLks 173 (810)
+.+++|.+-|..------++-||+.-|+- ..+.|+.|+..+..-|++|.+|.+||+.
T Consensus 4 Ev~ekLE~KiqqAvdTI~LLQmEieELKE-------knn~l~~e~q~~q~~reaL~~eneqlk~ 60 (79)
T COG3074 4 EVFEKLEAKVQQAIDTITLLQMEIEELKE-------KNNSLSQEVQNAQHQREALERENEQLKE 60 (79)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH-------HhhHhHHHHHHHHHHHHHHHHHHHHHHH
Confidence 35667766666555555667777776653 2457999999999999999999999998
No 243
>PF04012 PspA_IM30: PspA/IM30 family; InterPro: IPR007157 This family includes PspA a protein that suppresses sigma54-dependent transcription. The PspA protein, a negative regulator of the Escherichia coli phage shock psp operon, is produced when virulence factors are exported through secretins in many Gram-negative pathogenic bacteria and its homologue in plants, VIPP1, plays a critical role in thylakoid biogenesis, essential for photosynthesis. Activation of transcription by the enhancer-dependent bacterial sigma54-containing RNA polymerase occurs through ATP hydrolysis-driven protein conformational changes enabled by activator proteins that belong to the large AAA(+) mechanochemical protein family. It has been shown that PspA directly and specifically acts upon and binds to the AAA(+) domain of the PspF transcription activator [].
Probab=37.35 E-value=4.6e+02 Score=26.65 Aligned_cols=40 Identities=20% Similarity=0.293 Sum_probs=23.4
Q ss_pred hHHHHHHHHHHHHHhHhHHHHHHHHHhhh-c--cccccccccc
Q 003570 752 FTEVLMEVSLLKEKNKRMETELKEMQERY-S--EISLKFAEVE 791 (810)
Q Consensus 752 ~~~l~~e~~~lkern~~me~elkem~~ry-s--eisl~faeve 791 (810)
++.....+..+.+|...||.+..-+.+.+ + .+--+|++.+
T Consensus 160 ~~~a~~~~er~e~ki~~~ea~a~a~~el~~~~~~~e~~l~~~~ 202 (221)
T PF04012_consen 160 VSSAMDSFERMEEKIEEMEARAEASAELADSDQDLEAELEELE 202 (221)
T ss_pred ccchHHHHHHHHHHHHHHHHHHHHHHHhccCcccHHHHHHHhc
Confidence 44555566667777777777766666666 2 2334454444
No 244
>TIGR01069 mutS2 MutS2 family protein. Function of MutS2 is unknown. It should not be considered a DNA mismatch repair protein. It is likely a DNA mismatch binding protein of unknown cellular function.
Probab=37.34 E-value=5.1e+02 Score=32.05 Aligned_cols=24 Identities=17% Similarity=0.252 Sum_probs=14.9
Q ss_pred hhhHHHHHHHHHHHHHHHHHHHHh
Q 003570 590 RDDLEKKFASAKQEAAKAHEELIS 613 (810)
Q Consensus 590 r~el~~~~a~~kkeae~~~~EL~~ 613 (810)
+.+....+..++++++....+|..
T Consensus 567 ~~ea~~~~~~a~~~~~~~i~~lk~ 590 (771)
T TIGR01069 567 EKEAQEALKALKKEVESIIRELKE 590 (771)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHh
Confidence 344555666667777666666654
No 245
>TIGR02449 conserved hypothetical protein TIGR02449. Members of this family are small proteins, typically 73 amino acids in length, with single copies in each of several Proteobacteria, including Xylella fastidiosa, Pseudomonas aeruginosa, and Xanthomonas campestris. The function is unknown.
Probab=37.10 E-value=2.2e+02 Score=25.45 Aligned_cols=57 Identities=19% Similarity=0.259 Sum_probs=34.2
Q ss_pred HHHHHHHHHHHHHHHHHHhhhhhhhhHHHHHHHHhhhhhhhhhhhHhhHHHHHHHHHHHHHHHH
Q 003570 300 EDLEIYIKQLTEDCQVLEQENQCLTSKLEKIQQQESMKSRECIESLATIKELESQSERLEDKIK 363 (810)
Q Consensus 300 EeLe~~ieQL~~D~E~LkqEN~~ls~kLEq~q~Qeql~~~EcS~~~~~i~eLe~qve~LE~eLk 363 (810)
..|+.+|++|-.-|+.|+.+|.-|-..+..-+ .|-..+..-+..-.+.|+.+=..|+
T Consensus 3 ~~Le~kle~Li~~~~~L~~EN~~Lr~q~~~~~-------~ER~~L~ekne~Ar~rvEamI~RLk 59 (65)
T TIGR02449 3 QALAAQVEHLLEYLERLKSENRLLRAQEKTWR-------EERAQLLEKNEQARQKVEAMITRLK 59 (65)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHHHhhh
Confidence 46778888888888888888887765554411 3444444444444455555544444
No 246
>PRK00409 recombination and DNA strand exchange inhibitor protein; Reviewed
Probab=37.03 E-value=5.8e+02 Score=31.60 Aligned_cols=25 Identities=24% Similarity=0.353 Sum_probs=16.8
Q ss_pred hhhHHHHHHHHHHHHHHHHHHHHhh
Q 003570 590 RDDLEKKFASAKQEAAKAHEELISM 614 (810)
Q Consensus 590 r~el~~~~a~~kkeae~~~~EL~~m 614 (810)
+.+....+..++.+++....+|..+
T Consensus 572 ~~~a~~~l~~a~~~~~~~i~~lk~~ 596 (782)
T PRK00409 572 EKEAQQAIKEAKKEADEIIKELRQL 596 (782)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 3445566777777777777777654
No 247
>PF06548 Kinesin-related: Kinesin-related; InterPro: IPR010544 This entry represents a domain within kinesin-related proteins from higher plants. Many proteins containing this domain also contain the IPR001752 from INTERPRO domain. Kinesins are ATP-driven microtubule motor proteins that produce directed force []. Some family members are associated with the phragmoplast, a structure composed mainly of microtubules that executes cytokinesis in higher plants [].
Probab=36.90 E-value=8e+02 Score=29.31 Aligned_cols=123 Identities=21% Similarity=0.269 Sum_probs=70.8
Q ss_pred hHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHhhhhhhHHHH---------------HHhhHHhhhHHHHHHHHhhhhh
Q 003570 111 SVEKLKNEIAVMMRQVELSELELLSLRKQVAKESKRAQDQTRQ---------------IISLSSERDALTIECEQLRKQN 175 (810)
Q Consensus 111 ~iEkLKsE~~~l~Rq~e~selELQtLRKQi~KESKRgqdLsrE---------------v~~lk~ERD~Lk~EcEqLksqk 175 (810)
=+++||.++.+-.+.+++.++||.+ -|.|+.|-+-.-..+++ -+.|-+=-..+..-|+.+|.
T Consensus 296 LteeLR~dle~~r~~aek~~~EL~~-Ek~c~eEL~~al~~A~~GhaR~lEqYadLqEk~~~Ll~~Hr~i~egI~dVKk-- 372 (488)
T PF06548_consen 296 LTEELRVDLESSRSLAEKLEMELDS-EKKCTEELDDALQRAMEGHARMLEQYADLQEKHNDLLARHRRIMEGIEDVKK-- 372 (488)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHH-HHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--
Confidence 4689999999999999999999974 45677766544333222 22222222333333333333
Q ss_pred hhhHHHHhh-hhhhhhhh----HHHHHHHHHHhhhhhhcchhhhhhhhhhhhh---hHHHHHHHHHHHH
Q 003570 176 SIDIAEIER-RLQSEEHL----KFLQEEIREELNYEKEVSAHLRLQLEKTQDS---NAELILAVKDLNE 236 (810)
Q Consensus 176 ~~~ea~~~~-~lq~e~D~----~~llEElr~EL~yEKelNaNL~LQLqKTQES---NsELilAVqDLee 236 (810)
.--.|-+.| -.+|-+.. ..+=-|=+.|-.|-|+=|.+|+.||.-|-|. --||+.-+++-|+
T Consensus 373 aAakAg~kG~~~rF~~slaaEiSalr~erEkEr~~l~~eNk~L~~QLrDTAEAVqAagEllvrl~eaee 441 (488)
T PF06548_consen 373 AAAKAGVKGAESRFINSLAAEISALRAEREKERRFLKDENKGLQIQLRDTAEAVQAAGELLVRLREAEE 441 (488)
T ss_pred HHHHhccccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHhHHHHHHHHHHHHHHHHhHHH
Confidence 001121222 12232211 1233355678899999999999999999664 3455544444443
No 248
>PF12795 MscS_porin: Mechanosensitive ion channel porin domain
Probab=36.21 E-value=4.4e+02 Score=27.47 Aligned_cols=116 Identities=18% Similarity=0.217 Sum_probs=70.0
Q ss_pred HHHHhHHHHHHHHHHHHHHHHHhhhhhhhcc-cccCCCCCCcccchhhHHHhhhhhhhhhHHHHHHHHHHHHHHHHHHHH
Q 003570 534 QKHEALSTEIHMLRTEIEKLRKEQYNLSEHG-KRRDDNKPKVSTGETDMLIQKWNRERDDLEKKFASAKQEAAKAHEELI 612 (810)
Q Consensus 534 e~~~a~s~EI~~Lk~eie~L~~e~~~l~e~~-~~~d~e~~k~s~~e~~~~lq~~~~er~el~~~~a~~kkeae~~~~EL~ 612 (810)
..+..|-.+|..++.+|.+++.. ...+... -...+..+...+..+..-++.+...+...++.+..+-.-++.+...|.
T Consensus 45 ~~i~~aP~~~~~l~~~l~~l~~~-~~~~~~~~~~~s~~eLeq~l~~~~~~L~~~q~~l~~~~~~l~~~~~~p~~aq~~l~ 123 (240)
T PF12795_consen 45 KQIDQAPKEIRELQKELEALKSQ-DAPSKEILANLSLEELEQRLSQEQAQLQELQEQLQQENSQLIEIQTRPERAQQQLS 123 (240)
T ss_pred HHHHHhHHHHHHHHHHHHhhhcc-ccccccCcccCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccHHHHHHHHH
Confidence 34556666677777777666544 1111111 222233333345556666777777777777777776655555554444
Q ss_pred hhh-----------cc-----CchhHHHHhhHHHHHHHHHHHHHHHHhhhhHHH
Q 003570 613 SMR-----------SL-----KGENEMLIGNLQAEVENLKVQQNKLQNSLIEEK 650 (810)
Q Consensus 613 ~m~-----------~~-----kdEkE~~i~~LqsE~e~lk~Q~~~LK~sL~~ee 650 (810)
..+ .. ..--+.....|++|+..|..+.+.|...|....
T Consensus 124 ~~~~~l~ei~~~L~~~~~~~~~~l~~a~~~~l~ae~~~l~~~~~~le~el~s~~ 177 (240)
T PF12795_consen 124 EARQRLQEIRNQLQNLPPNGESPLSEAQRWLLQAELAALEAQIEMLEQELLSNN 177 (240)
T ss_pred HHHHHHHHHHHHHhccCCCCcchhhHHHHHHHHHHHHHHHHHHHHHHHHHHCcH
Confidence 322 22 444577888899999999999888887766543
No 249
>PF13851 GAS: Growth-arrest specific micro-tubule binding
Probab=36.10 E-value=5.2e+02 Score=26.86 Aligned_cols=165 Identities=18% Similarity=0.209 Sum_probs=86.0
Q ss_pred hhhhhHHHHHHHHHHHHHHhhhh---hhhhHHHHHHHHHHHHHHHhhHHHHHHHHHHhHHHHhhhhhhhh---ccHHHHh
Q 003570 428 KNTVTAERLQDEFRRLSVDMASK---FDENEKLAMKAMTEANEQRMQKAHLEEMLQKANDELSLIKDQNG---VKLQELS 501 (810)
Q Consensus 428 ~na~taErLQeEf~~LS~qmsSt---~eeNEklt~kA~~EaseLR~qk~~LEemLqk~neeL~~i~dq~e---~kl~eL~ 501 (810)
=|.||..+|. -+++|-.+|+.+ ...|++.+.....|-..|+.-...++........+|.. |+ ..|..+.
T Consensus 18 YndIT~~NL~-lIksLKeei~emkk~e~~~~k~m~ei~~eN~~L~epL~~a~~e~~eL~k~L~~----y~kdK~~L~~~k 92 (201)
T PF13851_consen 18 YNDITLNNLE-LIKSLKEEIAEMKKKEERNEKLMAEISQENKRLSEPLKKAEEEVEELRKQLKN----YEKDKQSLQNLK 92 (201)
T ss_pred HHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHH
Confidence 3678888885 677777777655 44555555544444444444444444333333333333 33 2233334
Q ss_pred HHHhhHHHHHHHHHHhhhhchhhhhHHhhhHHHHHHhHHHHHHHHHHHHHHHHHhhhhhhhcccccCCCCCCcccchhhH
Q 003570 502 DQLEQKDKQIQKMYLELDHSSSQLIDEHKSEAQKHEALSTEIHMLRTEIEKLRKEQYNLSEHGKRRDDNKPKVSTGETDM 581 (810)
Q Consensus 502 ~qld~k~k~ie~m~~Ele~kS~qle~~kk~~ee~~~a~s~EI~~Lk~eie~L~~e~~~l~e~~~~~d~e~~k~s~~e~~~ 581 (810)
..+....+++..+..|-+.....+....+.+++....|..=|+..
T Consensus 93 ~rl~~~ek~l~~Lk~e~evL~qr~~kle~ErdeL~~kf~~~i~ev----------------------------------- 137 (201)
T PF13851_consen 93 ARLKELEKELKDLKWEHEVLEQRFEKLEQERDELYRKFESAIQEV----------------------------------- 137 (201)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-----------------------------------
Confidence 444444555555555555444444444444444444444433333
Q ss_pred HHhhhhhhhhhHHHHHHHHHHHHHHHHHHHHhhhccCchhHHHHhhHHHHHH
Q 003570 582 LIQKWNRERDDLEKKFASAKQEAAKAHEELISMRSLKGENEMLIGNLQAEVE 633 (810)
Q Consensus 582 ~lq~~~~er~el~~~~a~~kkeae~~~~EL~~m~~~kdEkE~~i~~LqsE~e 633 (810)
-|+.....--|++++..+-...++.-.+|+.+.+.-+=.-..+..+...|+
T Consensus 138 -qQk~~~kn~lLEkKl~~l~~~lE~keaqL~evl~~~nldp~~~~~v~~~l~ 188 (201)
T PF13851_consen 138 -QQKTGLKNLLLEKKLQALSEQLEKKEAQLNEVLAAANLDPAALSQVSKKLE 188 (201)
T ss_pred -HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHH
Confidence 233444455677888888888888777777754433322233433344443
No 250
>PF06156 DUF972: Protein of unknown function (DUF972); InterPro: IPR010377 FUNCTION: Involved in initiation control of chromosome replication. SUBUNIT: Interacts with both DnaA and DnaN, acting as a bridge between these two proteins. SIMILARITY: Belongs to the YabA family.
Probab=35.34 E-value=1.2e+02 Score=28.99 Aligned_cols=48 Identities=29% Similarity=0.488 Sum_probs=36.5
Q ss_pred hhHHHHHHHHHhhhHHHHhhhhHHHHHHHHHHHHHHHHHHHhhhhhhhhHHHHHH
Q 003570 277 EVDMLKQKIRDQGDEIQFFKKHAEDLEIYIKQLTEDCQVLEQENQCLTSKLEKIQ 331 (810)
Q Consensus 277 E~~~LkqKI~DL~~Eie~ykkerEeLe~~ieQL~~D~E~LkqEN~~ls~kLEq~q 331 (810)
.+..|++.|..++.+| ..|..+|.+|..++..|+-||..|..+|.+..
T Consensus 9 ~l~~le~~l~~l~~~~-------~~LK~~~~~l~EEN~~L~~EN~~Lr~~l~~~~ 56 (107)
T PF06156_consen 9 RLDQLEQQLGQLLEEL-------EELKKQLQELLEENARLRIENEHLRERLEELE 56 (107)
T ss_pred HHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 4455666666665554 56888899999999999999999998887743
No 251
>PRK11281 hypothetical protein; Provisional
Probab=35.16 E-value=1.2e+03 Score=30.64 Aligned_cols=145 Identities=20% Similarity=0.220 Sum_probs=83.9
Q ss_pred HHHHHHhhHHHHHhhhHHHHHHHHHHHHHHHHHhhhhhhhHHHHHHHHHHHHHHhhhhhhhhHHHHHHHHHHHHHHHhhH
Q 003570 393 QAQEFEDDIDAVTHAKTEQEQRAIRAEEELRKTRWKNTVTAERLQDEFRRLSVDMASKFDENEKLAMKAMTEANEQRMQK 472 (810)
Q Consensus 393 Qaq~fe~Dldam~~~k~EQEqRAi~AEeaLrKtR~~na~taErLQeEf~~LS~qmsSt~eeNEklt~kA~~EaseLR~qk 472 (810)
++..|-.+++.......+..+++..|-..++... .++..|+........ ... ...+. +.|=...
T Consensus 67 ~tL~~L~qi~~~~~~~~~L~k~l~~Ap~~l~~a~-----------~~Le~Lk~~~~~~~~--~~~--~~~Sl-~qLEq~L 130 (1113)
T PRK11281 67 QTLALLDKIDRQKEETEQLKQQLAQAPAKLRQAQ-----------AELEALKDDNDEETR--ETL--STLSL-RQLESRL 130 (1113)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHH-----------HHHHHhhcccccccc--ccc--cccCH-HHHHHHH
Confidence 4567777777777777777888877766655443 333344332111110 111 12222 2244555
Q ss_pred HHHHHHHHHhHHHHhhhhhhhhccHHHHhHHHhhHHHHHHHHHHhhhhchhhhhHHhh----hHHHHHHhHHHHHHHHHH
Q 003570 473 AHLEEMLQKANDELSLIKDQNGVKLQELSDQLEQKDKQIQKMYLELDHSSSQLIDEHK----SEAQKHEALSTEIHMLRT 548 (810)
Q Consensus 473 ~~LEemLqk~neeL~~i~dq~e~kl~eL~~qld~k~k~ie~m~~Ele~kS~qle~~kk----~~ee~~~a~s~EI~~Lk~ 548 (810)
..++..|+.+...|.. |.+.+-.++++...-...|-.....+..-.++|.+..- ..+.....+..|..+|++
T Consensus 131 ~q~~~~Lq~~Q~~La~----~NsqLi~~qT~PERAQ~~lsea~~RlqeI~~~L~~~~~~~~~l~~~~~~~l~ae~~~l~~ 206 (1113)
T PRK11281 131 AQTLDQLQNAQNDLAE----YNSQLVSLQTQPERAQAALYANSQRLQQIRNLLKGGKVGGKALRPSQRVLLQAEQALLNA 206 (1113)
T ss_pred HHHHHHHHHHHHHHHH----HHHHHHhhhcchHHHHHHHHHHHHHHHHHHHHHhCCCCCCCcCCHHHHHHHHHHHHHHHH
Confidence 5666667777666666 66667677776666666666555555555556644322 224556677788888888
Q ss_pred HHHHHHHhh
Q 003570 549 EIEKLRKEQ 557 (810)
Q Consensus 549 eie~L~~e~ 557 (810)
+|+-++.+.
T Consensus 207 ~~~~~~~~l 215 (1113)
T PRK11281 207 QNDLQRKSL 215 (1113)
T ss_pred HHHHHHHHH
Confidence 877666443
No 252
>PF09304 Cortex-I_coil: Cortexillin I, coiled coil; InterPro: IPR015383 This domain is predominantly found in the actin-bundling protein cortexillin I from Dictyostelium discoideum (Slime mold). The domain has a structure consisting of an 18-heptad-repeat alpha-helical coiled-coil, and is a prerequisite for the assembly of Cortexillin I []. ; PDB: 1D7M_A.
Probab=34.54 E-value=4.5e+02 Score=25.70 Aligned_cols=89 Identities=15% Similarity=0.192 Sum_probs=46.2
Q ss_pred hhhHHHHHHHHHHHHHHHHHHHHhhhccCchhHHHHhhHHHHHHHHHHHHHHHHhhhhHHHHHhhHHHHHHHHHHHHHHh
Q 003570 590 RDDLEKKFASAKQEAAKAHEELISMRSLKGENEMLIGNLQAEVENLKVQQNKLQNSLIEEKLEKDNLAKQVFQLKDELQK 669 (810)
Q Consensus 590 r~el~~~~a~~kkeae~~~~EL~~m~~~kdEkE~~i~~LqsE~e~lk~Q~~~LK~sL~~ee~EKe~l~kQv~qLk~eL~K 669 (810)
++++...+|.+-..-+......-.+-.-+|+=+..+..|+.+-.++--.+++|+..+++--..-+..+-.-.+|.+.+-|
T Consensus 11 ~~el~n~La~Le~slE~~K~S~~eL~kqkd~L~~~l~~L~~q~~s~~qr~~eLqaki~ea~~~le~eK~ak~~l~~r~~k 90 (107)
T PF09304_consen 11 QNELQNRLASLERSLEDEKTSQGELAKQKDQLRNALQSLQAQNASRNQRIAELQAKIDEARRNLEDEKQAKLELESRLLK 90 (107)
T ss_dssp ---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHhhHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44555566666555544433333335555666666666666666666666666666655433333322333455666666
Q ss_pred hHHHHHhhh
Q 003570 670 KKEEINRTG 678 (810)
Q Consensus 670 Ke~~~~~~e 678 (810)
-+-..+-.|
T Consensus 91 ~~~dka~le 99 (107)
T PF09304_consen 91 AQKDKAILE 99 (107)
T ss_dssp HHHHHHHHH
T ss_pred HHhhhhHHH
Confidence 555554443
No 253
>KOG2751 consensus Beclin-like protein [Signal transduction mechanisms]
Probab=33.89 E-value=6.3e+02 Score=29.90 Aligned_cols=91 Identities=26% Similarity=0.356 Sum_probs=42.6
Q ss_pred hhhHHHHhhhhHHHHHH-----HHHHHHHHHHHHHhhhhhhhhHHHHHHHHhhhhhhhhhhhHhhHHHHHHHHHHHHHHH
Q 003570 288 QGDEIQFFKKHAEDLEI-----YIKQLTEDCQVLEQENQCLTSKLEKIQQQESMKSRECIESLATIKELESQSERLEDKI 362 (810)
Q Consensus 288 L~~Eie~ykkerEeLe~-----~ieQL~~D~E~LkqEN~~ls~kLEq~q~Qeql~~~EcS~~~~~i~eLe~qve~LE~eL 362 (810)
+-+|++.|++=.+.|+. ..+++-.+.+.|+.++..+-.-|+....++ ++|- ..+.+++..-+++.++-
T Consensus 155 ~~~e~~~Y~~~l~~Le~~~~~~~~~~~~~e~~~l~~eE~~L~q~lk~le~~~----~~l~---~~l~e~~~~~~~~~e~~ 227 (447)
T KOG2751|consen 155 AEDEVDTYKACLQRLEQQNQDVSEEDLLKELKNLKEEEERLLQQLEELEKEE----AELD---HQLKELEFKAERLNEEE 227 (447)
T ss_pred HHHHHHHHHHHHHHHhhcCcccchHHHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHH---HHHHHHHHHHHHHHHHH
Confidence 33455554443333332 233344444444555544444444422222 3333 23444555555666666
Q ss_pred HHHhHHHhHhhHhHHHHHHHHHH
Q 003570 363 KQQSEEYSESLISINELECQVKE 385 (810)
Q Consensus 363 k~q~~efSesL~tI~eLE~qv~s 385 (810)
..-.++|..+.+.+=+.+..+.+
T Consensus 228 ~~~~~ey~~~~~q~~~~~del~S 250 (447)
T KOG2751|consen 228 DQYWREYNNFQRQLIEHQDELDS 250 (447)
T ss_pred HHHHHHHHHHHHhhhcccchHHH
Confidence 66666777666554443333333
No 254
>PF02403 Seryl_tRNA_N: Seryl-tRNA synthetase N-terminal domain; InterPro: IPR015866 The aminoacyl-tRNA synthetases (6.1.1. from EC) catalyse the attachment of an amino acid to its cognate transfer RNA molecule in a highly specific two-step reaction. These proteins differ widely in size and oligomeric state, and have limited sequence homology []. The 20 aminoacyl-tRNA synthetases are divided into two classes, I and II. Class I aminoacyl-tRNA synthetases contain a characteristic Rossman fold catalytic domain and are mostly monomeric []. Class II aminoacyl-tRNA synthetases share an anti-parallel beta-sheet fold flanked by alpha-helices [], and are mostly dimeric or multimeric, containing at least three conserved regions [, , ]. However, tRNA binding involves an alpha-helical structure that is conserved between class I and class II synthetases. In reactions catalysed by the class I aminoacyl-tRNA synthetases, the aminoacyl group is coupled to the 2'-hydroxyl of the tRNA, while, in class II reactions, the 3'-hydroxyl site is preferred. The synthetases specific for arginine, cysteine, glutamic acid, glutamine, isoleucine, leucine, methionine, tyrosine, tryptophan and valine belong to class I synthetases. The synthetases specific for alanine, asparagine, aspartic acid, glycine, histidine, lysine, phenylalanine, proline, serine, and threonine belong to class-II synthetases []. Based on their mode of binding to the tRNA acceptor stem, both classes of tRNA synthetases have been subdivided into three subclasses, designated 1a, 1b, 1c and 2a, 2b, 2c. This entry represents the N-terminal domain of Seryl-tRNA synthetase, which consists of two helices in a long alpha-hairpin. Seryl-tRNA synthetase (6.1.1.11 from EC) exists as monomer and belongs to class IIa [].; GO: 0000166 nucleotide binding, 0004828 serine-tRNA ligase activity, 0005524 ATP binding, 0006434 seryl-tRNA aminoacylation, 0005737 cytoplasm; PDB: 3QO8_A 3QO5_A 3QO7_A 3QNE_A 3LSQ_A 3LSS_A 2DQ3_B 1SET_A 1SER_A 1SRY_B ....
Probab=33.88 E-value=1.9e+02 Score=26.26 Aligned_cols=57 Identities=25% Similarity=0.247 Sum_probs=43.4
Q ss_pred hhHHHHHHHHHHHHHHhhhhhhhhHHHHHHHHHHHHHHHhhHHHHHHHHHHhHHHHhh
Q 003570 431 VTAERLQDEFRRLSVDMASKFDENEKLAMKAMTEANEQRMQKAHLEEMLQKANDELSL 488 (810)
Q Consensus 431 ~taErLQeEf~~LS~qmsSt~eeNEklt~kA~~EaseLR~qk~~LEemLqk~neeL~~ 488 (810)
..++.|+.+-..+|.+|....... .-+-..+.++..+..+...+|+.+..+.+++..
T Consensus 43 ~~~e~lr~~rN~~sk~I~~~~~~~-~~~~~l~~e~~~lk~~i~~le~~~~~~e~~l~~ 99 (108)
T PF02403_consen 43 QELEELRAERNELSKEIGKLKKAG-EDAEELKAEVKELKEEIKELEEQLKELEEELNE 99 (108)
T ss_dssp HHHHHHHHHHHHHHHHHHHHCHTT-CCTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhHHHHHHHHHhhCc-ccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 467888999999999998887765 223455677888888888888888888777654
No 255
>KOG0976 consensus Rho/Rac1-interacting serine/threonine kinase Citron [Signal transduction mechanisms]
Probab=33.83 E-value=1.1e+03 Score=30.22 Aligned_cols=32 Identities=3% Similarity=0.070 Sum_probs=18.8
Q ss_pred hhHHHHHHHHHHHHHHHHHHHhhhhhhhhHHH
Q 003570 297 KHAEDLEIYIKQLTEDCQVLEQENQCLTSKLE 328 (810)
Q Consensus 297 kerEeLe~~ieQL~~D~E~LkqEN~~ls~kLE 328 (810)
...-+++++..++..|...++..|-..+-++.
T Consensus 176 ~~lt~~~~q~~tkl~e~~~en~~le~k~~k~~ 207 (1265)
T KOG0976|consen 176 EELNEFNMEFQTKLAEANREKKALEEKLEKFK 207 (1265)
T ss_pred hHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34456667777777776666665554443333
No 256
>PF08581 Tup_N: Tup N-terminal; InterPro: IPR013890 The N-terminal region of the Tup protein has been shown to interact with the Ssn6 transcriptional co-repressor []. ; PDB: 3VP9_B 3VP8_B.
Probab=33.75 E-value=2.4e+02 Score=25.75 Aligned_cols=67 Identities=28% Similarity=0.389 Sum_probs=50.8
Q ss_pred HHHHHHHHHHHHHhhh---hhhhhHHHHHHHHHHHHHHHhhHHHHHHHHHHhHHHHhhhhhhhhccHHHHhHHHhhH
Q 003570 434 ERLQDEFRRLSVDMAS---KFDENEKLAMKAMTEANEQRMQKAHLEEMLQKANDELSLIKDQNGVKLQELSDQLEQK 507 (810)
Q Consensus 434 ErLQeEf~~LS~qmsS---t~eeNEklt~kA~~EaseLR~qk~~LEemLqk~neeL~~i~dq~e~kl~eL~~qld~k 507 (810)
+.+..||..++.++.+ --++=|.-+...+.|...+|...-.||..-.+ +|.+||..+..|..+|+..
T Consensus 7 d~ir~Ef~~~~~e~~~~k~~~~e~e~ki~~Qi~Em~~ir~~v~eLE~~h~k-------mK~~YEeEI~rLr~eLe~r 76 (79)
T PF08581_consen 7 DAIRQEFENLSQEANSYKHQKDEYEHKINSQIQEMQQIRQKVYELEQAHRK-------MKQQYEEEIARLRRELEQR 76 (79)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHCHH
T ss_pred HHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHhh
Confidence 4566778887776544 34555677888889999999888888876655 4778999999998888764
No 257
>PF11932 DUF3450: Protein of unknown function (DUF3450); InterPro: IPR016866 There is currently no experimental data for members of this group or their homologues, nor do they exhibit features indicative of any function. However, they are found in an operon along with components of a TonB transport system (typified by Vibrio cholerae TonB2 [], and are predicted to be localized to the periplasmic space. Caution: the low-complexity nature of these sequences produces spurious BLAST hits to chromosome segregation ATPases (which are much longer in length and contain canonical Walker motifs). Accordingly, some members are misidentified as such.
Probab=33.55 E-value=5e+02 Score=27.20 Aligned_cols=58 Identities=17% Similarity=0.221 Sum_probs=28.7
Q ss_pred HHHHHHhHHHHHHHHHHHHHHHHHhhhhhhhcccccCCCCCCcccchhhHHHhhhhhhhhhHHHHHHHHH
Q 003570 532 EAQKHEALSTEIHMLRTEIEKLRKEQYNLSEHGKRRDDNKPKVSTGETDMLIQKWNRERDDLEKKFASAK 601 (810)
Q Consensus 532 ~ee~~~a~s~EI~~Lk~eie~L~~e~~~l~e~~~~~d~e~~k~s~~e~~~~lq~~~~er~el~~~~a~~k 601 (810)
-.+....|..|.+.|..+|..|..+...|...+ .+.+..+.....++++|+..+..+.
T Consensus 40 sQ~~id~~~~e~~~L~~e~~~l~~e~e~L~~~~------------~~l~~~v~~q~~el~~L~~qi~~~~ 97 (251)
T PF11932_consen 40 SQKRIDQWDDEKQELLAEYRQLEREIENLEVYN------------EQLERQVASQEQELASLEQQIEQIE 97 (251)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH------------HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 334445555555555555555555555543222 3334455555555555555554433
No 258
>KOG4360 consensus Uncharacterized coiled coil protein [Function unknown]
Probab=33.40 E-value=2.2e+02 Score=34.15 Aligned_cols=155 Identities=23% Similarity=0.258 Sum_probs=86.8
Q ss_pred hhHHHHHHHHHHHHHHhhhhhhhhHHHHHHHHHHHHHHHhhHHHHHHHHHHhHHHHhhhhhhhhccHHHHhHHHhhHHHH
Q 003570 431 VTAERLQDEFRRLSVDMASKFDENEKLAMKAMTEANEQRMQKAHLEEMLQKANDELSLIKDQNGVKLQELSDQLEQKDKQ 510 (810)
Q Consensus 431 ~taErLQeEf~~LS~qmsSt~eeNEklt~kA~~EaseLR~qk~~LEemLqk~neeL~~i~dq~e~kl~eL~~qld~k~k~ 510 (810)
.++.|++. ..|-...-++.++|+.+-. +|+-||-.-.+.++.=+-. +..+-.+++---.+
T Consensus 154 S~~~~~~~--EaL~ekLk~~~een~~lr~----k~~llk~Et~~~~~keq~~--------------y~~~~KelrdtN~q 213 (596)
T KOG4360|consen 154 SAFQRELL--EALQEKLKPLEEENTQLRS----KAMLLKTETLTYEEKEQQL--------------YGDCVKELRDTNTQ 213 (596)
T ss_pred hhHHHHHH--HHHHhhcCChHHHHHHHHH----HHHHHHhhhcchhHHHHHH--------------HHHHHHHHHHHHHH
Confidence 44555443 3566666777777766644 3445555444444332211 12233444445555
Q ss_pred HHHHHHhhhhchhhhhHHhhhHHHHHHhHHHHHHHHHHHHHHHHHhhhhhhhcccccCCCCCCcccchhhHHHhhhhhhh
Q 003570 511 IQKMYLELDHSSSQLIDEHKSEAQKHEALSTEIHMLRTEIEKLRKEQYNLSEHGKRRDDNKPKVSTGETDMLIQKWNRER 590 (810)
Q Consensus 511 ie~m~~Ele~kS~qle~~kk~~ee~~~a~s~EI~~Lk~eie~L~~e~~~l~e~~~~~d~e~~k~s~~e~~~~lq~~~~er 590 (810)
+-.|..||..|++++..++-. ...|-.+|--++.+|..++.|.+.+-+.. ..+|.+. ..-++|-
T Consensus 214 ~~s~~eel~~kt~el~~q~Ee----~skLlsql~d~qkk~k~~~~Ekeel~~~L-----q~~~da~-------~ql~aE~ 277 (596)
T KOG4360|consen 214 ARSGQEELQSKTKELSRQQEE----NSKLLSQLVDLQKKIKYLRHEKEELDEHL-----QAYKDAQ-------RQLTAEL 277 (596)
T ss_pred HHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHhhHHHHHHHHHHHHHHHHHH-----HHHHhhH-------HHHHHHH
Confidence 666666777777777544422 23333444444445544444444432221 1121111 1236788
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHhhhccCchh
Q 003570 591 DDLEKKFASAKQEAAKAHEELISMRSLKGEN 621 (810)
Q Consensus 591 ~el~~~~a~~kkeae~~~~EL~~m~~~kdEk 621 (810)
.|++.++|-.+..-..+.+||+.+|+--.=+
T Consensus 278 ~EleDkyAE~m~~~~EaeeELk~lrs~~~p~ 308 (596)
T KOG4360|consen 278 EELEDKYAECMQMLHEAEEELKCLRSCDAPK 308 (596)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhhccCCCcc
Confidence 8999999999999999999999999854433
No 259
>PF05377 FlaC_arch: Flagella accessory protein C (FlaC); InterPro: IPR008039 Although archaeal flagella appear superficially similar to those of bacteria, they are quite distinct []. In several archaea, the flagellin genes are followed immediately by the flagellar accessory genes flaCDEFGHIJ. The gene products may have a role in translocation, secretion, or assembly of the flagellum. FlaC is a protein whose exact role is unknown but it has been shown to be membrane-associated (by immuno-blotting fractionated cells) [].
Probab=33.28 E-value=1.4e+02 Score=25.97 Aligned_cols=40 Identities=35% Similarity=0.452 Sum_probs=34.1
Q ss_pred HHHHHHHHHHHHHHHHHHhHHHhHhhHhHHHHHHHHHHHH
Q 003570 348 IKELESQSERLEDKIKQQSEEYSESLISINELECQVKELK 387 (810)
Q Consensus 348 i~eLe~qve~LE~eLk~q~~efSesL~tI~eLE~qv~sLe 387 (810)
|++||+.+-+++..+-..++++++--.+|..++.-|+.|-
T Consensus 2 i~elEn~~~~~~~~i~tvk~en~~i~~~ve~i~envk~ll 41 (55)
T PF05377_consen 2 IDELENELPRIESSINTVKKENEEISESVEKIEENVKDLL 41 (55)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 6789999999999999999998888888888888876654
No 260
>PRK10698 phage shock protein PspA; Provisional
Probab=33.01 E-value=6e+02 Score=26.72 Aligned_cols=125 Identities=18% Similarity=0.222 Sum_probs=65.0
Q ss_pred HHHHHHHHHHhhhhhhhhhhhhhhhhhhhhhHHHHHHHHhhccCchhhHHHHHHHHHhhhHHHHhhhhHHHHHHHHHHHH
Q 003570 231 VKDLNEMLEQKNMEISSLSSKLEESKLVREDQLALEALAKERNKDKEVDMLKQKIRDQGDEIQFFKKHAEDLEIYIKQLT 310 (810)
Q Consensus 231 VqDLeeMLEqKn~EIs~ls~~~~e~~~~~edq~ale~Lvke~~~~~E~~~LkqKI~DL~~Eie~ykkerEeLe~~ieQL~ 310 (810)
-+-++--+.+....|.+...+..-.-..+.+.+|-.+|.....-+..+..|+.-+..+..-++.++.....|+.+|.++.
T Consensus 54 ~k~~er~~~~~~~~~~~~e~kA~~Al~~G~EdLAr~AL~~K~~~~~~~~~l~~~~~~~~~~~~~L~~~l~~L~~ki~eak 133 (222)
T PRK10698 54 KKQLTRRIEQAEAQQVEWQEKAELALRKEKEDLARAALIEKQKLTDLIATLEHEVTLVDETLARMKKEIGELENKLSETR 133 (222)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33444455555555555444333333344566777777776655555555555555554444444444444444444444
Q ss_pred HHHHHHHhhhhhhhhHHHHHHHHhhhhhhhh------hhhHhhHHHHHHHHHHHHHHHHH
Q 003570 311 EDCQVLEQENQCLTSKLEKIQQQESMKSREC------IESLATIKELESQSERLEDKIKQ 364 (810)
Q Consensus 311 ~D~E~LkqEN~~ls~kLEq~q~Qeql~~~Ec------S~~~~~i~eLe~qve~LE~eLk~ 364 (810)
-....| ..+....+.|. +|++- ++.+..+..+|..|.++|.+-.-
T Consensus 134 ~k~~~L-------~aR~~~A~a~~--~~~~~~~~~~~~~a~~~f~rmE~ki~~~Ea~aea 184 (222)
T PRK10698 134 ARQQAL-------MLRHQAASSSR--DVRRQLDSGKLDEAMARFESFERRIDQMEAEAES 184 (222)
T ss_pred HHHHHH-------HHHHHHHHHHH--HHHHHHhCCCcchHHHHHHHHHHHHHHHHHHHhH
Confidence 444444 33666655554 34333 34444555566667666666543
No 261
>TIGR01010 BexC_CtrB_KpsE polysaccharide export inner-membrane protein, BexC/CtrB/KpsE family. This family contains gamma proteobacterial proteins involved in capsule polysaccharide export.
Probab=32.91 E-value=6.8e+02 Score=27.33 Aligned_cols=128 Identities=19% Similarity=0.294 Sum_probs=87.2
Q ss_pred hhhhhHHHHHHHHhhccCchhhHHHHHHHHHhhhHHHHhhhhHHHHHHHHHHHHHHHHHHHhhhhhhhhHHHHHHHHhhh
Q 003570 257 LVREDQLALEALAKERNKDKEVDMLKQKIRDQGDEIQFFKKHAEDLEIYIKQLTEDCQVLEQENQCLTSKLEKIQQQESM 336 (810)
Q Consensus 257 ~~~edq~ale~Lvke~~~~~E~~~LkqKI~DL~~Eie~ykkerEeLe~~ieQL~~D~E~LkqEN~~ls~kLEq~q~Qeql 336 (810)
+++........++... . .-+..++.+. ..+-++...++.+.++.++...+.....++..|..+.-.-.
T Consensus 141 dP~~A~~ian~l~~~~-~-~~i~~~~~~~--~~~a~~fl~~ql~~~~~~l~~ae~~l~~fr~~~~~~d~~~~-------- 208 (362)
T TIGR01010 141 DAEEAQKINQRLLKEG-E-RLINRLNERA--RKDTIAFAENEVKEAEQRLNATKAELLKYQIKNKVFDPKAQ-------- 208 (362)
T ss_pred CHHHHHHHHHHHHHHH-H-HHHHHHHHHH--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCcChHHH--------
Confidence 3444555555665521 1 1222233322 23344555667777777777777777888887766542211
Q ss_pred hhhhhhhhHhhHHHHHHHHHHHHHHHHHHhHHHhHhhHhHHHHHHHHHHHHHHHHHHHHHHHhh
Q 003570 337 KSRECIESLATIKELESQSERLEDKIKQQSEEYSESLISINELECQVKELKRELDKQAQEFEDD 400 (810)
Q Consensus 337 ~~~EcS~~~~~i~eLe~qve~LE~eLk~q~~efSesL~tI~eLE~qv~sLeeEl~~Qaq~fe~D 400 (810)
-......|.+|++++..++.+|...+..|.+---.|-.|.+++..|...+..........
T Consensus 209 ----~~~~~~~i~~L~~~l~~~~~~l~~l~~~~~~~~P~v~~l~~~i~~l~~~i~~e~~~i~~~ 268 (362)
T TIGR01010 209 ----SSAQLSLISTLEGELIRVQAQLAQLRSITPEQNPQVPSLQARIKSLRKQIDEQRNQLSGG 268 (362)
T ss_pred ----HHHHHHHHHHHHHHHHHHHHHHHHHHhhCCCCCCchHHHHHHHHHHHHHHHHHHHHhhcC
Confidence 123446799999999999999999998888878899999999999999998887777654
No 262
>PF14992 TMCO5: TMCO5 family
Probab=32.88 E-value=7.4e+02 Score=27.69 Aligned_cols=41 Identities=12% Similarity=0.311 Sum_probs=35.0
Q ss_pred cchhhhhhhhhhhhhhHHHHHHHHHHHHHHHHhhhhhhhhh
Q 003570 209 VSAHLRLQLEKTQDSNAELILAVKDLNEMLEQKNMEISSLS 249 (810)
Q Consensus 209 lNaNL~LQLqKTQESNsELilAVqDLeeMLEqKn~EIs~ls 249 (810)
+|.+|-=.+|+.-|.|-.|+.-++.=|..+--.-.||....
T Consensus 5 Ln~dle~d~Q~ldE~Nq~lL~ki~~~E~~iq~Le~Eit~~~ 45 (280)
T PF14992_consen 5 LNMDLEKDEQRLDEANQSLLQKIQEKEGAIQSLEREITKMD 45 (280)
T ss_pred hccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHc
Confidence 67788888999999999999999999998888778887643
No 263
>PRK15178 Vi polysaccharide export inner membrane protein VexD; Provisional
Probab=32.65 E-value=8.8e+02 Score=28.50 Aligned_cols=92 Identities=11% Similarity=0.123 Sum_probs=65.7
Q ss_pred hhhHHHHHHHHHHHHHHHHHHHhhhhhhhhHHHHHHHHhhhhhhhhhhhHhhHHHHHHHHHHHHHHHHHHhHHHhHhhHh
Q 003570 296 KKHAEDLEIYIKQLTEDCQVLEQENQCLTSKLEKIQQQESMKSRECIESLATIKELESQSERLEDKIKQQSEEYSESLIS 375 (810)
Q Consensus 296 kkerEeLe~~ieQL~~D~E~LkqEN~~ls~kLEq~q~Qeql~~~EcS~~~~~i~eLe~qve~LE~eLk~q~~efSesL~t 375 (810)
.++.+.-+..+..-....-.++..+.-|.-. -.-.+....|+.|++|+..++.+|.....-++..--.
T Consensus 248 e~ev~~Ae~rl~~Ar~aL~~fRn~~gvlDP~------------~~a~~~~~lI~~Le~qLa~~~aeL~~L~~~~~p~sPq 315 (434)
T PRK15178 248 ENDVKSAQENLGAARLELLKIQHIQKDIDPK------------ETITAIYQLIAGFETQLAEAKAEYAQLMVNGLDQNPL 315 (434)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhCCCcChH------------HHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCCCc
Confidence 3444445555554444444444443333211 2334455789999999999999999998878888899
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHh
Q 003570 376 INELECQVKELKRELDKQAQEFED 399 (810)
Q Consensus 376 I~eLE~qv~sLeeEl~~Qaq~fe~ 399 (810)
|-.|.++|..|+++|..+-.++-.
T Consensus 316 V~~l~~rI~aLe~QIa~er~kl~~ 339 (434)
T PRK15178 316 IPRLSAKIKVLEKQIGEQRNRLSN 339 (434)
T ss_pred hhHHHHHHHHHHHHHHHHHHHhhc
Confidence 999999999999999998888753
No 264
>TIGR01069 mutS2 MutS2 family protein. Function of MutS2 is unknown. It should not be considered a DNA mismatch repair protein. It is likely a DNA mismatch binding protein of unknown cellular function.
Probab=32.48 E-value=1e+03 Score=29.48 Aligned_cols=84 Identities=18% Similarity=0.270 Sum_probs=54.0
Q ss_pred HHHHHHHHHHHHHHHHHhHHHhHhhHhHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHhhhHHHHHHHHHHHHHHHHHhhh
Q 003570 349 KELESQSERLEDKIKQQSEEYSESLISINELECQVKELKRELDKQAQEFEDDIDAVTHAKTEQEQRAIRAEEELRKTRWK 428 (810)
Q Consensus 349 ~eLe~qve~LE~eLk~q~~efSesL~tI~eLE~qv~sLeeEl~~Qaq~fe~Dldam~~~k~EQEqRAi~AEeaLrKtR~~ 428 (810)
.+...+++.|-.+|..+..+.-.-...+..+..++..+.++++.+...|+...+.+...- ...|...++++|-
T Consensus 507 ~~~~~~~~~li~~L~~~~~~~e~~~~~~~~~~~e~~~~~~~l~~~~~~l~~~~~~~~~~a------~~ea~~~~~~a~~- 579 (771)
T TIGR01069 507 GEFKEEINVLIEKLSALEKELEQKNEHLEKLLKEQEKLKKELEQEMEELKERERNKKLEL------EKEAQEALKALKK- 579 (771)
T ss_pred HhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH------HHHHHHHHHHHHH-
Confidence 344467777778888888877777777777777777777777777777776555443222 2234445555553
Q ss_pred hhhhHHHHHHHHHH
Q 003570 429 NTVTAERLQDEFRR 442 (810)
Q Consensus 429 na~taErLQeEf~~ 442 (810)
.++++-++++.
T Consensus 580 ---~~~~~i~~lk~ 590 (771)
T TIGR01069 580 ---EVESIIRELKE 590 (771)
T ss_pred ---HHHHHHHHHHh
Confidence 45566666654
No 265
>PF04645 DUF603: Protein of unknown function, DUF603; InterPro: IPR006739 This family includes several uncharacterised proteins from Borrelia species.
Probab=32.28 E-value=1.4e+02 Score=31.23 Aligned_cols=62 Identities=34% Similarity=0.505 Sum_probs=38.5
Q ss_pred hhhHHHHHHHHHhhhHHHHhh-----hhHHHHHHHHHHHHHHHHHHHhhhhhhhhHHHHHHHHhhhhh-hhhhhhHhhHH
Q 003570 276 KEVDMLKQKIRDQGDEIQFFK-----KHAEDLEIYIKQLTEDCQVLEQENQCLTSKLEKIQQQESMKS-RECIESLATIK 349 (810)
Q Consensus 276 ~E~~~LkqKI~DL~~Eie~yk-----kerEeLe~~ieQL~~D~E~LkqEN~~ls~kLEq~q~Qeql~~-~EcS~~~~~i~ 349 (810)
+++..|+-||.-|..+|..-. .+.+.|+..+..+-..|++.+ +.+ |+|..-++...
T Consensus 112 ~ei~~L~~kI~~L~~~in~~~k~~~n~~i~slk~EL~d~iKe~e~~e------------------meLyyecMkkL~~a~ 173 (181)
T PF04645_consen 112 KEIEILRLKISSLQKEINKNKKKDLNEEIESLKSELNDLIKEREIRE------------------MELYYECMKKLAKAH 173 (181)
T ss_pred HHHHHHHHHHHHHHHHhhhhhhhhhhhhHHHHHHHHHHHHHHHHHHH------------------HHHHHHHHHHHhhhh
Confidence 466677777777777666311 233445555555555444433 244 99999998888
Q ss_pred HHHHHH
Q 003570 350 ELESQS 355 (810)
Q Consensus 350 eLe~qv 355 (810)
+.++++
T Consensus 174 ~~esk~ 179 (181)
T PF04645_consen 174 EVESKS 179 (181)
T ss_pred hhhhcc
Confidence 888764
No 266
>PF01442 Apolipoprotein: Apolipoprotein A1/A4/E domain; InterPro: IPR000074 Exchangeable apolipoproteins (apoA, apoC and apoE) have the same genomic structure and are members of a multi-gene family that probably evolved from a common ancestral gene. This entry includes the ApoA1, ApoA4 and ApoE proteins. ApoA1 and ApoA4 are part of the APOA1/C3/A4/A5 gene cluster on chromosome 11 []. Apolipoproteins function in lipid transport as structural components of lipoprotein particles, cofactors for enzymes and ligands for cell-surface receptors. In particular, apoA1 is the major protein component of high-density lipoproteins; apoA4 is thought to act primarily in intestinal lipid absorption; and apoE is a blood plasma protein that mediates the transport and uptake of cholesterol and lipid by way of its high affinity interaction with different cellular receptors, including the low-density lipoprotein (LDL) receptor. Recent findings with apoA1 and apoE suggest that the tertiary structures of these two members of the human exchangeable apolipoprotein gene family are related []. The three-dimensional structure of the LDL receptor-binding domain of apoE indicates that the protein forms an unusually elongated four-helix bundle that may be stabilised by a tightly packed hydrophobic core that includes leucine zipper-type interactions and by numerous salt bridges on the mostly charged surface. Basic amino acids important for LDL receptor binding are clustered into a surface patch on one long helix [].; GO: 0008289 lipid binding, 0006869 lipid transport, 0042157 lipoprotein metabolic process, 0005576 extracellular region; PDB: 1YA9_A 3S84_A 1NFN_A 1LE2_A 1B68_A 1BZ4_A 1OEG_A 2L7B_A 1LE4_A 1EA8_A ....
Probab=32.26 E-value=4.3e+02 Score=24.81 Aligned_cols=25 Identities=32% Similarity=0.622 Sum_probs=10.9
Q ss_pred HHHHHHHHHHHHHHHHHhHHHhHhh
Q 003570 349 KELESQSERLEDKIKQQSEEYSESL 373 (810)
Q Consensus 349 ~eLe~qve~LE~eLk~q~~efSesL 373 (810)
..+.+++..++..|.....+|...|
T Consensus 8 ~~l~~~~~~l~~~l~~~~~~~~~~l 32 (202)
T PF01442_consen 8 DSLSSRTEELEERLEELSDEIADRL 32 (202)
T ss_dssp HHHHHHHHHHHHCHCSCCHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3344444444444444444444433
No 267
>PF02994 Transposase_22: L1 transposable element; InterPro: IPR004244 Many human L1 elements are capable of retrotransposition. Some of these have been shown to exhibit reverse transcriptase (RT) activity [] although the function of many are, as yet, unknown. More information about these proteins can be found at Protein of the Month: Transposase [].; PDB: 2LDY_A 3SOO_A 2YKQ_A 2YKO_C 2YKP_B 2W7A_B 2JRB_A.
Probab=32.19 E-value=96 Score=34.73 Aligned_cols=41 Identities=27% Similarity=0.431 Sum_probs=23.8
Q ss_pred hhhHHHHHHHHHhhhHHHHhhhhHHHHHHHHHHHHHHHHHH
Q 003570 276 KEVDMLKQKIRDQGDEIQFFKKHAEDLEIYIKQLTEDCQVL 316 (810)
Q Consensus 276 ~E~~~LkqKI~DL~~Eie~ykkerEeLe~~ieQL~~D~E~L 316 (810)
.-++.++++|.++-+.++........++..|..|..-+..|
T Consensus 144 ~Ri~e~Eeris~lEd~~~~i~~~~~~~~k~i~~l~~kl~Dl 184 (370)
T PF02994_consen 144 SRIDELEERISELEDRIEEIEQAIKELEKRIKKLEDKLDDL 184 (370)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHhHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHH
Confidence 45666677777776666655555555555555555544443
No 268
>KOG0994 consensus Extracellular matrix glycoprotein Laminin subunit beta [Extracellular structures]
Probab=32.17 E-value=1.4e+03 Score=30.70 Aligned_cols=19 Identities=21% Similarity=0.342 Sum_probs=12.8
Q ss_pred CcchHHHHHHHHHHHHhhh
Q 003570 108 SDGSVEKLKNEIAVMMRQV 126 (810)
Q Consensus 108 sd~~iEkLKsE~~~l~Rq~ 126 (810)
|..+|++|-..+..|.|+.
T Consensus 1223 s~~~i~~l~~~~~~lr~~l 1241 (1758)
T KOG0994|consen 1223 SAEDIAQLASATESLRRQL 1241 (1758)
T ss_pred cHHHHHHHHHHHHHHHHHH
Confidence 5567777777777776663
No 269
>PF00804 Syntaxin: Syntaxin; InterPro: IPR006011 Syntaxins A and B are nervous system-specific proteins implicated in the docking of synaptic vesicles with the presynaptic plasma membrane. Syntaxins are a family of receptors for intracellular transport vesicles. Each target membrane may be identified by a specific member of the syntaxin family []. Members of the syntaxin family [, ] have a size ranging from 30 Kd to 40 Kd; a C-terminal extremity which is highly hydrophobic and anchors the protein on the cytoplasmic surface of cellular membranes; a central, well conserved region, which seems to be in a coiled-coil conformation. ; GO: 0016020 membrane; PDB: 1S94_B 1EZ3_A 3C98_B 1BR0_A 1FIO_A 2XHE_B.
Probab=31.71 E-value=3.4e+02 Score=23.38 Aligned_cols=93 Identities=18% Similarity=0.339 Sum_probs=58.2
Q ss_pred HHHHHHHHhhHHHHHHHHHHhHHHHhhhhhhhhccHHHHhHHHhhHHHHHHHHHHhhhhchhhhhHHhhhHHHHHHhHHH
Q 003570 462 MTEANEQRMQKAHLEEMLQKANDELSLIKDQNGVKLQELSDQLEQKDKQIQKMYLELDHSSSQLIDEHKSEAQKHEALST 541 (810)
Q Consensus 462 ~~EaseLR~qk~~LEemLqk~neeL~~i~dq~e~kl~eL~~qld~k~k~ie~m~~Ele~kS~qle~~kk~~ee~~~a~s~ 541 (810)
+.+|++.+.....+...+.+...--..+-.-.-.. ..+..+|+..+..|-++...+..+-+.|...-. .......-+.
T Consensus 6 ~~~v~~i~~~i~~i~~~~~~l~~l~~~~l~~~~~d-~~~~~el~~l~~~i~~~~~~~~~~lk~l~~~~~-~~~~~~~~~~ 83 (103)
T PF00804_consen 6 FDEVQEIREDIDKIKEKLNELRKLHKKILSSPDQD-SELKRELDELTDEIKQLFQKIKKRLKQLSKDNE-DSEGEEPSSN 83 (103)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHTSSSHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHCTT--SH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCcc-hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh-hhcccCCCcH
Confidence 56777888888888777766644333222111100 467778888888888887777777766655533 4455566677
Q ss_pred HHHHHHHHHHHHHHh
Q 003570 542 EIHMLRTEIEKLRKE 556 (810)
Q Consensus 542 EI~~Lk~eie~L~~e 556 (810)
++.+++.....|+..
T Consensus 84 ~~ri~~nq~~~L~~k 98 (103)
T PF00804_consen 84 EVRIRKNQVQALSKK 98 (103)
T ss_dssp HHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHH
Confidence 777777777766654
No 270
>COG4026 Uncharacterized protein containing TOPRIM domain, potential nuclease [General function prediction only]
Probab=31.28 E-value=1.8e+02 Score=31.76 Aligned_cols=74 Identities=30% Similarity=0.311 Sum_probs=34.2
Q ss_pred HHHHHHHhhhHHHHhhhhHHHHHHHHHHHHHHHHHHHhhhhhhhhHHHHHHHHhhhhhhhhhhhHhhHHHHHHHHHHHHH
Q 003570 281 LKQKIRDQGDEIQFFKKHAEDLEIYIKQLTEDCQVLEQENQCLTSKLEKIQQQESMKSRECIESLATIKELESQSERLED 360 (810)
Q Consensus 281 LkqKI~DL~~Eie~ykkerEeLe~~ieQL~~D~E~LkqEN~~ls~kLEq~q~Qeql~~~EcS~~~~~i~eLe~qve~LE~ 360 (810)
++.|+.++..|-+...++.++|+...+.+......|.-+|.-|--.+.- ...|.+.+-.-..+|+--|+.+|.
T Consensus 140 ~kekl~E~~~EkeeL~~eleele~e~ee~~erlk~le~E~s~LeE~~~~-------l~~ev~~L~~r~~ELe~~~El~e~ 212 (290)
T COG4026 140 LKEKLEELQKEKEELLKELEELEAEYEEVQERLKRLEVENSRLEEMLKK-------LPGEVYDLKKRWDELEPGVELPEE 212 (290)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh-------chhHHHHHHHHHHHhcccccchHH
Confidence 4444444444444444555555555555555444444444322211111 114555555555555555555444
Q ss_pred H
Q 003570 361 K 361 (810)
Q Consensus 361 e 361 (810)
.
T Consensus 213 ~ 213 (290)
T COG4026 213 E 213 (290)
T ss_pred H
Confidence 3
No 271
>COG3883 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=31.22 E-value=7.6e+02 Score=27.34 Aligned_cols=43 Identities=21% Similarity=0.375 Sum_probs=26.5
Q ss_pred hhhHHHHHHHHHhhhHHHHhhhhHHHHHHHHHHHHHHHHHHHh
Q 003570 276 KEVDMLKQKIRDQGDEIQFFKKHAEDLEIYIKQLTEDCQVLEQ 318 (810)
Q Consensus 276 ~E~~~LkqKI~DL~~Eie~ykkerEeLe~~ieQL~~D~E~Lkq 318 (810)
.++..|-.+|.++++.++.-+++.+.+...|.+|..+...|+.
T Consensus 52 ~ei~~L~~qi~~~~~k~~~~~~~i~~~~~eik~l~~eI~~~~~ 94 (265)
T COG3883 52 NEIESLDNQIEEIQSKIDELQKEIDQSKAEIKKLQKEIAELKE 94 (265)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4555666666666666666666666666666666666666554
No 272
>PRK15422 septal ring assembly protein ZapB; Provisional
Probab=31.00 E-value=2.1e+02 Score=26.65 Aligned_cols=62 Identities=23% Similarity=0.355 Sum_probs=0.0
Q ss_pred HHHhhhhhhhhHHHHHHHHH----HHHHHHhhHHHHHHH----------HHHhHHHHhhhhhhhhccHHHHhHHHh
Q 003570 444 SVDMASKFDENEKLAMKAMT----EANEQRMQKAHLEEM----------LQKANDELSLIKDQNGVKLQELSDQLE 505 (810)
Q Consensus 444 S~qmsSt~eeNEklt~kA~~----EaseLR~qk~~LEem----------Lqk~neeL~~i~dq~e~kl~eL~~qld 505 (810)
|++|.+..++.=..|++.|+ |+.+|..+|..|... |..-|+.|+.-...+..+|..|..+++
T Consensus 2 S~EvleqLE~KIqqAvdtI~LLqmEieELKekn~~L~~e~~~~~~~r~~L~~en~qLk~E~~~WqerLr~LLGkm~ 77 (79)
T PRK15422 2 SLEVFEKLEAKVQQAIDTITLLQMEIEELKEKNNSLSQEVQNAQHQREELERENNHLKEQQNGWQERLQALLGRME 77 (79)
T ss_pred cHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhc
No 273
>TIGR02449 conserved hypothetical protein TIGR02449. Members of this family are small proteins, typically 73 amino acids in length, with single copies in each of several Proteobacteria, including Xylella fastidiosa, Pseudomonas aeruginosa, and Xanthomonas campestris. The function is unknown.
Probab=30.99 E-value=2.2e+02 Score=25.42 Aligned_cols=53 Identities=19% Similarity=0.188 Sum_probs=45.0
Q ss_pred hhHHHHHHHHHhhhHHHHhhhhHHHHHHHHHHHHHHHHHHHhhhhhhhhHHHH
Q 003570 277 EVDMLKQKIRDQGDEIQFFKKHAEDLEIYIKQLTEDCQVLEQENQCLTSKLEK 329 (810)
Q Consensus 277 E~~~LkqKI~DL~~Eie~ykkerEeLe~~ieQL~~D~E~LkqEN~~ls~kLEq 329 (810)
++..|.+||..|..-.+-.+.++-.|..+..++..+-..|..-|.--.+++|-
T Consensus 1 ~L~~Le~kle~Li~~~~~L~~EN~~Lr~q~~~~~~ER~~L~ekne~Ar~rvEa 53 (65)
T TIGR02449 1 ELQALAAQVEHLLEYLERLKSENRLLRAQEKTWREERAQLLEKNEQARQKVEA 53 (65)
T ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 35678999999987777778899999999999999999999977777767665
No 274
>PF14992 TMCO5: TMCO5 family
Probab=30.30 E-value=6.9e+02 Score=27.90 Aligned_cols=105 Identities=20% Similarity=0.196 Sum_probs=65.1
Q ss_pred HHHhHHHhhHHHHHHHHHHhhhhchhhhhHH---hhhHHHHH---HhHHHHHHHHHHHHHHHHHhhhhh----hhcc--c
Q 003570 498 QELSDQLEQKDKQIQKMYLELDHSSSQLIDE---HKSEAQKH---EALSTEIHMLRTEIEKLRKEQYNL----SEHG--K 565 (810)
Q Consensus 498 ~eL~~qld~k~k~ie~m~~Ele~kS~qle~~---kk~~ee~~---~a~s~EI~~Lk~eie~L~~e~~~l----~e~~--~ 565 (810)
+.|.-+|+.+...|+.+.-|+..--..+... -.--++.. ..+-.+..+|..+.+-|+.-+..| +++. .
T Consensus 21 q~lL~ki~~~E~~iq~Le~Eit~~~~~~~~~e~e~~~~~~~e~~l~~le~e~~~LE~~ne~l~~~~~elq~k~~e~~~~~ 100 (280)
T PF14992_consen 21 QSLLQKIQEKEGAIQSLEREITKMDHIADRSEEEDIISEERETDLQELELETAKLEKENEHLSKSVQELQRKQDEQETNV 100 (280)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHccccCchhHHhhhhhchHHHHHHHHhhhHHHhhhhHhhhhhhhhhhhhhccccCCC
Confidence 4556678888888888777765332222111 11112223 333466677777777774444443 3333 5
Q ss_pred ccCCCCCCcccchhhHHHhhhhhhhhhHHHHHHHHHH
Q 003570 566 RRDDNKPKVSTGETDMLIQKWNRERDDLEKKFASAKQ 602 (810)
Q Consensus 566 ~~d~e~~k~s~~e~~~~lq~~~~er~el~~~~a~~kk 602 (810)
+.+...++.+..+++.-+|.-...-..+++.++-+..
T Consensus 101 ~~e~~~~~~~lq~sk~~lqql~~~~~~qE~ei~kve~ 137 (280)
T PF14992_consen 101 QCEDPQLSQSLQFSKNKLQQLLESCASQEKEIAKVED 137 (280)
T ss_pred CCCccchhcccHHhhhhHHHHHHHHHHHHHHHHHHHH
Confidence 6677888888888888888888877777777776654
No 275
>KOG2391 consensus Vacuolar sorting protein/ubiquitin receptor VPS23 [Posttranslational modification, protein turnover, chaperones; Intracellular trafficking, secretion, and vesicular transport]
Probab=30.23 E-value=1.7e+02 Score=33.44 Aligned_cols=63 Identities=14% Similarity=0.162 Sum_probs=33.2
Q ss_pred CcchHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHhhhhhhHHHHHHhhHHhhhHHHHHHHHhhhhhhhhHHHHhh
Q 003570 108 SDGSVEKLKNEIAVMMRQVELSELELLSLRKQVAKESKRAQDQTRQIISLSSERDALTIECEQLRKQNSIDIAEIER 184 (810)
Q Consensus 108 sd~~iEkLKsE~~~l~Rq~e~selELQtLRKQi~KESKRgqdLsrEv~~lk~ERD~Lk~EcEqLksqk~~~ea~~~~ 184 (810)
.++.++.+-+|...+.|-.+-..-..+ .|..++..|..++-.|..-|+=|++.....-.+..|
T Consensus 223 ~eeeme~~~aeq~slkRt~EeL~~G~~--------------kL~~~~etLEqq~~~L~~niDIL~~k~~eal~~~~n 285 (365)
T KOG2391|consen 223 REEEMERLQAEQESLKRTEEELNIGKQ--------------KLVAMKETLEQQLQSLQKNIDILKSKVREALEKAEN 285 (365)
T ss_pred HHHHHHHHHHHHHHHHhhHHHHHhhHH--------------HHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHhhhcc
Confidence 344455555555555555544443333 455556666666666666666666644333344444
No 276
>PF09006 Surfac_D-trimer: Lung surfactant protein D coiled-coil trimerisation; InterPro: IPR015097 This domain is found in the SFTPD family, which includes lung surfactant protein D (SFTPD), conglutinin, collectin-43 and collectin-46. It forms a triple-helical parallel coiled coil, and mediates trimerisation of the protein []. ; PDB: 4DN8_A 3G84_A 2RIE_C 3IKR_B 1B08_A 2GGX_B 2OS9_C 2ORK_B 1PWB_A 2RIA_C ....
Probab=30.19 E-value=86 Score=26.49 Aligned_cols=26 Identities=23% Similarity=0.400 Sum_probs=22.0
Q ss_pred HHHHHHHHHHHHHHHHHHhHHHhHhh
Q 003570 348 IKELESQSERLEDKIKQQSEEYSESL 373 (810)
Q Consensus 348 i~eLe~qve~LE~eLk~q~~efSesL 373 (810)
|+.|+.||+.|+.+++.+...||-+=
T Consensus 1 i~aLrqQv~aL~~qv~~Lq~~fs~yK 26 (46)
T PF09006_consen 1 INALRQQVEALQGQVQRLQAAFSQYK 26 (46)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred ChHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 57788999999999999999888653
No 277
>PF00804 Syntaxin: Syntaxin; InterPro: IPR006011 Syntaxins A and B are nervous system-specific proteins implicated in the docking of synaptic vesicles with the presynaptic plasma membrane. Syntaxins are a family of receptors for intracellular transport vesicles. Each target membrane may be identified by a specific member of the syntaxin family []. Members of the syntaxin family [, ] have a size ranging from 30 Kd to 40 Kd; a C-terminal extremity which is highly hydrophobic and anchors the protein on the cytoplasmic surface of cellular membranes; a central, well conserved region, which seems to be in a coiled-coil conformation. ; GO: 0016020 membrane; PDB: 1S94_B 1EZ3_A 3C98_B 1BR0_A 1FIO_A 2XHE_B.
Probab=30.16 E-value=3.6e+02 Score=23.21 Aligned_cols=64 Identities=16% Similarity=0.340 Sum_probs=43.7
Q ss_pred hhHHHHHHHHHHHHHHHHHHhHHHhHhhHhHH---HHHHHHHHHHHHHHHHHHHHHhhHHHHHhhhH
Q 003570 346 ATIKELESQSERLEDKIKQQSEEYSESLISIN---ELECQVKELKRELDKQAQEFEDDIDAVTHAKT 409 (810)
Q Consensus 346 ~~i~eLe~qve~LE~eLk~q~~efSesL~tI~---eLE~qv~sLeeEl~~Qaq~fe~Dldam~~~k~ 409 (810)
..+.++...+..+...+.....-|...|.+.. .+..++..|-.++...+......|..|.....
T Consensus 7 ~~v~~i~~~i~~i~~~~~~l~~l~~~~l~~~~~d~~~~~el~~l~~~i~~~~~~~~~~lk~l~~~~~ 73 (103)
T PF00804_consen 7 DEVQEIREDIDKIKEKLNELRKLHKKILSSPDQDSELKRELDELTDEIKQLFQKIKKRLKQLSKDNE 73 (103)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHTSSSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCcchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 34455555555555555555555555555554 68888888888888888888888888776643
No 278
>PF14389 Lzipper-MIP1: Leucine-zipper of ternary complex factor MIP1
Probab=30.15 E-value=3.3e+02 Score=24.95 Aligned_cols=73 Identities=23% Similarity=0.348 Sum_probs=49.1
Q ss_pred hHHHHHHHHHHHHHHhhHHHHHhhhhcccccCCCCchhhhhHHHHHHHhhhhhhhhhhhhcccchhchHHHHHhhhcccc
Q 003570 654 DNLAKQVFQLKDELQKKKEEINRTGKGLKKYGGPVSDAQMTSMKERLRKGQKKLNKAELETSDNRIAVDEYRHMIRKGET 733 (810)
Q Consensus 654 e~l~kQv~qLk~eL~KKe~~~~~~ekklk~s~g~~sd~~~~~~~~~ikeg~ik~~e~ale~St~~~~~~~~~~~~~~~~~ 733 (810)
..|.+-|.+|+..|.+-.+.-..+|+.+..+.|+.+.
T Consensus 11 ~~LeqeV~~Lq~~L~~E~~~r~aLe~al~~~~~~~~~------------------------------------------- 47 (88)
T PF14389_consen 11 SALEQEVAELQKQLQEEQDLRRALEKALGRSSGSLPS------------------------------------------- 47 (88)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCcccCC-------------------------------------------
Confidence 3467788889988887777666676666555443211
Q ss_pred cccccccccccCCCCCCchHHHHHHHHHHHHHhHhHHHHHHHHHhh
Q 003570 734 CSEKGVTALASHSSDEGNFTEVLMEVSLLKEKNKRMETELKEMQER 779 (810)
Q Consensus 734 ~~e~e~~~~~~~~~~~~~~~~l~~e~~~lkern~~me~elkem~~r 779 (810)
..+.-...+.+||.|++.|-.=-..+|..+-.++-+
T Consensus 48 ----------~~~~lp~~~keLL~EIA~lE~eV~~LE~~v~~L~~~ 83 (88)
T PF14389_consen 48 ----------SPSSLPKKAKELLEEIALLEAEVAKLEQKVLSLYRQ 83 (88)
T ss_pred ----------ccccCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 111233567899999998888878888777766543
No 279
>PF05529 Bap31: B-cell receptor-associated protein 31-like ; InterPro: IPR008417 Bap31 is a polytopic integral protein of the endoplasmic reticulum membrane and a substrate of caspase-8. Bap31 is cleaved within its cytosolic domain, generating pro-apoptotic p20 Bap31 [].; GO: 0006886 intracellular protein transport, 0005783 endoplasmic reticulum, 0016021 integral to membrane
Probab=29.83 E-value=1.9e+02 Score=29.03 Aligned_cols=37 Identities=19% Similarity=0.214 Sum_probs=25.5
Q ss_pred hHHHHHHHHHhhhHHHHhhhhHHHHHHHHHHHHHHHH
Q 003570 278 VDMLKQKIRDQGDEIQFFKKHAEDLEIYIKQLTEDCQ 314 (810)
Q Consensus 278 ~~~LkqKI~DL~~Eie~ykkerEeLe~~ieQL~~D~E 314 (810)
...+++.|.++..||+....+.+.|..|.+.|+.+|+
T Consensus 156 ~~~~~~ei~~lk~el~~~~~~~~~LkkQ~~~l~~eyd 192 (192)
T PF05529_consen 156 NKKLSEEIEKLKKELEKKEKEIEALKKQSEGLQKEYD 192 (192)
T ss_pred hhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcC
Confidence 3445555666666666666777888888888888773
No 280
>PF04728 LPP: Lipoprotein leucine-zipper; InterPro: IPR006817 This repeating sequence, NAKVDQLSNDV, is found in the enterobacterial outer membrane lipoprotein LPP. The outer membrane lipoprotein is the most abundant protein in an Escherichia coli cell. The messenger RNA for the lipoprotein of the E. coli outer membrane codes for a putative precursor, prolipoprotein, which has 20 additional amino acid residues extending from the amino terminus of the lipoprotein.; GO: 0019867 outer membrane; PDB: 1JCC_A 2GUV_C 2GUS_A 1JCD_A 1KFM_A 1T8Z_D 1KFN_A 1EQ7_A.
Probab=29.71 E-value=2.8e+02 Score=24.26 Aligned_cols=26 Identities=23% Similarity=0.505 Sum_probs=19.1
Q ss_pred HHHhHHHHHHHHHHHHHHHHHhhhhh
Q 003570 535 KHEALSTEIHMLRTEIEKLRKEQYNL 560 (810)
Q Consensus 535 ~~~a~s~EI~~Lk~eie~L~~e~~~l 560 (810)
++..|+.+|+.|.++|..|..+.+.+
T Consensus 4 kid~Ls~dVq~L~~kvdqLs~dv~~l 29 (56)
T PF04728_consen 4 KIDQLSSDVQTLNSKVDQLSSDVNAL 29 (56)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45667888888888888777666555
No 281
>PF09325 Vps5: Vps5 C terminal like; InterPro: IPR015404 Vps5 is a sorting nexin that functions in membrane trafficking. This is the C-terminal dimerisation domain [].
Probab=29.58 E-value=5.9e+02 Score=25.57 Aligned_cols=53 Identities=25% Similarity=0.244 Sum_probs=32.8
Q ss_pred hhHHHHhhhhHHHHHHHHHHHHHHHHHHHhhhhhhhhHHHHHHHHhhhhhhhhhhhHhhHHHHH
Q 003570 289 GDEIQFFKKHAEDLEIYIKQLTEDCQVLEQENQCLTSKLEKIQQQESMKSRECIESLATIKELE 352 (810)
Q Consensus 289 ~~Eie~ykkerEeLe~~ieQL~~D~E~LkqEN~~ls~kLEq~q~Qeql~~~EcS~~~~~i~eLe 352 (810)
...+...+.-.+.|+.+|..|..-++.+.....++..-+ .+.+.++..+...+
T Consensus 23 D~~F~~~~~~~~~le~~Lk~l~~~~~~l~~~~~~l~~~~-----------~e~~~~~~~la~~E 75 (236)
T PF09325_consen 23 DEWFEEIKDYVDKLEEQLKKLYKSLERLVKRRQELASAL-----------AEFGSSFSQLAKSE 75 (236)
T ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-----------HHHHHHHHHhhccc
Confidence 335555566677788888888877777777555555333 34555555555444
No 282
>PF14915 CCDC144C: CCDC144C protein coiled-coil region
Probab=29.43 E-value=8.8e+02 Score=27.49 Aligned_cols=128 Identities=20% Similarity=0.302 Sum_probs=64.1
Q ss_pred HHHHHHHHHHHHHHHHHHhhHHHHHhhhHHHHHHHHHHHHHHHHHhhhhhhhHHHHHHHHHHHHHHhhhhhhhhHHH---
Q 003570 381 CQVKELKRELDKQAQEFEDDIDAVTHAKTEQEQRAIRAEEELRKTRWKNTVTAERLQDEFRRLSVDMASKFDENEKL--- 457 (810)
Q Consensus 381 ~qv~sLeeEl~~Qaq~fe~Dldam~~~k~EQEqRAi~AEeaLrKtR~~na~taErLQeEf~~LS~qmsSt~eeNEkl--- 457 (810)
-.|..+.-.-..+.-.|-.|++++.--+-....-.---|++|.+|-..|.--..-|--|-..|+..+---=...|++
T Consensus 13 lEidtik~q~qekE~ky~ediei~Kekn~~Lqk~lKLneE~ltkTi~qy~~QLn~L~aENt~L~SkLe~EKq~kerLEtE 92 (305)
T PF14915_consen 13 LEIDTIKNQNQEKEKKYLEDIEILKEKNDDLQKSLKLNEETLTKTIFQYNGQLNVLKAENTMLNSKLEKEKQNKERLETE 92 (305)
T ss_pred HHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHhhhHHHHHHHHHHHhHHHHHhHHHHHHHHHH
Confidence 33333333334444456666665544443333333333666666655554433333333333333332111111111
Q ss_pred -------HHHHHHHHHHHHhhHHHHHHHHHHhHHHHhhhhhhhhccHHHHhHHHhhHH
Q 003570 458 -------AMKAMTEANEQRMQKAHLEEMLQKANDELSLIKDQNGVKLQELSDQLEQKD 508 (810)
Q Consensus 458 -------t~kA~~EaseLR~qk~~LEemLqk~neeL~~i~dq~e~kl~eL~~qld~k~ 508 (810)
...|+.+.+.-..-++-||=-||.+.+|--+++|..-+.+..|...-.+-+
T Consensus 93 iES~rsRLaaAi~d~dqsq~skrdlelafqr~rdEw~~lqdkmn~d~S~lkd~ne~Ls 150 (305)
T PF14915_consen 93 IESYRSRLAAAIQDHDQSQTSKRDLELAFQRARDEWVRLQDKMNSDVSNLKDNNEILS 150 (305)
T ss_pred HHHHHHHHHHHHhhHHHHHhhHHHHHHHHHHHhhHHHHHHHHhcchHHhHHHHhHHHH
Confidence 223566666666667778888888888777777766666644444333333
No 283
>PF04100 Vps53_N: Vps53-like, N-terminal ; InterPro: IPR007234 Vps53 complexes with Vps52 and Vps54 to form a multi-subunit complex involved in regulating membrane trafficking events [].
Probab=29.16 E-value=8.9e+02 Score=27.48 Aligned_cols=151 Identities=22% Similarity=0.363 Sum_probs=94.4
Q ss_pred HHHHHHHHHHhhhhhhhhhhhhhhhhhhhhhHHHHHHHHhhcc-CchhhHHHHHHHHHhhhHHHHhhhhHHHHHHHHHHH
Q 003570 231 VKDLNEMLEQKNMEISSLSSKLEESKLVREDQLALEALAKERN-KDKEVDMLKQKIRDQGDEIQFFKKHAEDLEIYIKQL 309 (810)
Q Consensus 231 VqDLeeMLEqKn~EIs~ls~~~~e~~~~~edq~ale~Lvke~~-~~~E~~~LkqKI~DL~~Eie~ykkerEeLe~~ieQL 309 (810)
+.+|+..+..-+.+|..+...+... +.....-+. ....+...+..|.+|...|..-+..-+.=+.-+..+
T Consensus 20 L~~ld~~i~~l~~~i~~ld~eI~~~---------v~~q~~~~~~~~~~l~~a~~~i~~L~~~i~~ik~kA~~sE~~V~~i 90 (383)
T PF04100_consen 20 LSNLDELIAKLRKEIRELDEEIKEL---------VREQSSSGQDAEEDLEEAQEAIQELFEKISEIKSKAEESEQMVQEI 90 (383)
T ss_pred HHhHHHHHHHHHHHHHHHHHHHHHH---------HHHHhhccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 5677788877777777766544421 111111111 234567778899999999999998999999999999
Q ss_pred HHHHHHHHhhhhhhhhHHHHH-HHHh----------hhh---hhhhhhhHhhHHHHHHHHHHHHHHHHHHhHHHhHhhHh
Q 003570 310 TEDCQVLEQENQCLTSKLEKI-QQQE----------SMK---SRECIESLATIKELESQSERLEDKIKQQSEEYSESLIS 375 (810)
Q Consensus 310 ~~D~E~LkqEN~~ls~kLEq~-q~Qe----------ql~---~~EcS~~~~~i~eLe~qve~LE~eLk~q~~efSesL~t 375 (810)
+.|.-.|-..--+|....-=- .+|+ -+. ..||..++..+.+|=.|+... .+.-.
T Consensus 91 t~dIk~LD~AKrNLT~SIT~LkrL~MLv~a~~qL~~~~~~r~Y~e~a~~L~av~~L~~~F~~y------------ksi~~ 158 (383)
T PF04100_consen 91 TRDIKQLDNAKRNLTQSITTLKRLQMLVTAVEQLKELAKKRQYKEIASLLQAVKELLEHFKPY------------KSIPQ 158 (383)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHHcc------------cCcHH
Confidence 999999987777665432210 1222 001 135555555555554444322 13456
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhHHHHH
Q 003570 376 INELECQVKELKRELDKQAQEFEDDIDAVT 405 (810)
Q Consensus 376 I~eLE~qv~sLeeEl~~Qaq~fe~Dldam~ 405 (810)
|+.|=.+|..|..+|..|+. .|++.++
T Consensus 159 I~~L~~~i~~l~~~L~~qI~---~df~~~f 185 (383)
T PF04100_consen 159 IAELSKRIDQLQNELKEQIF---EDFEELF 185 (383)
T ss_pred HHHHHHHHHHHHHHHHHHHH---HHHHHHh
Confidence 77777888888888877764 4555555
No 284
>COG4717 Uncharacterized conserved protein [Function unknown]
Probab=29.14 E-value=1.4e+03 Score=29.64 Aligned_cols=251 Identities=19% Similarity=0.257 Sum_probs=0.0
Q ss_pred cchHHHHHHHHHHHHhhhhhh-------HHHHHHHHHHHHHHhhhhhhHHHHHHhhHHhhhHHHHHHHHhhh---hhhhh
Q 003570 109 DGSVEKLKNEIAVMMRQVELS-------ELELLSLRKQVAKESKRAQDQTRQIISLSSERDALTIECEQLRK---QNSID 178 (810)
Q Consensus 109 d~~iEkLKsE~~~l~Rq~e~s-------elELQtLRKQi~KESKRgqdLsrEv~~lk~ERD~Lk~EcEqLks---qk~~~ 178 (810)
+.......+|...|.--.-++ -+|+=++=|-|.+.-+...+|..++..|+++|+++..-.+.|-. .-.+.
T Consensus 584 e~~~~e~~se~e~~l~~l~l~~el~~~~~~d~ls~mkd~~~~~q~~~EL~~q~~~L~ee~~af~~~v~~l~~~~e~~~~~ 663 (984)
T COG4717 584 EAAMAEWQSEWEEALDELGLSRELSPEQQLDILSTMKDLKKLMQKKAELTHQVARLREEQAAFEERVEGLLAVLEAQFID 663 (984)
T ss_pred HhhhhHHHHHHHHHHHhccCCccCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhcccch
Q ss_pred HHHHhhhhhhhhhhHHHHHHHHHHhhhhhhcchhhhhhhhhhhhhhHHHHHHHHHHHHHHHHhhhhhhhhhhhhhhhhhh
Q 003570 179 IAEIERRLQSEEHLKFLQEEIREELNYEKEVSAHLRLQLEKTQDSNAELILAVKDLNEMLEQKNMEISSLSSKLEESKLV 258 (810)
Q Consensus 179 ea~~~~~lq~e~D~~~llEElr~EL~yEKelNaNL~LQLqKTQESNsELilAVqDLeeMLEqKn~EIs~ls~~~~e~~~~ 258 (810)
....--+.+...+...+.|+-|-++---+ ..|-|+|.+|=-.++-- ++||++|. ..-.+.+.
T Consensus 664 ls~~~~~~r~~~~~e~~~Ee~r~~le~~~----------~~t~El~~~L~ae~~~~-------~kei~dLf-d~~~~~~e 725 (984)
T COG4717 664 LSTLFCVQRLRVAAELQKEEARLALEGNI----------ERTKELNDELRAELELH-------RKEILDLF-DCGTADTE 725 (984)
T ss_pred hHHHHHHHHHHHHHHHhhHHHHHHHhhhH----------HHHHHHHHHHHHHHHHH-------HHHHHHHH-hhcccCcH
Q ss_pred hhhHHHHHHHHhhccCchhhHHHHHHHH-------HhhhHHHHhh---hhHHHHHHHHHHHHHHHHHHHhhhhhhhhHHH
Q 003570 259 REDQLALEALAKERNKDKEVDMLKQKIR-------DQGDEIQFFK---KHAEDLEIYIKQLTEDCQVLEQENQCLTSKLE 328 (810)
Q Consensus 259 ~edq~ale~Lvke~~~~~E~~~LkqKI~-------DL~~Eie~yk---kerEeLe~~ieQL~~D~E~LkqEN~~ls~kLE 328 (810)
|+.-.+....--...-...+..+.+.+. +|+......- ++.-.|+..++-+..+|+.|...=..++..++
T Consensus 726 d~F~e~A~~~qq~~q~~srl~~~~aql~~v~~~~~eL~~~~~~~~~~e~E~~~lEe~~d~~~ee~~el~a~v~~~~~qi~ 805 (984)
T COG4717 726 DAFREAAREEQQLTQRESRLESLEAQLEGVAAEAYELSASLDQRELKEEELALLEEAIDALDEEVEELHAQVAALSRQIA 805 (984)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCchhHHhhhhhhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_pred HHHHHhhhhhhhhhhhHhhHHHHHHHHHHHHHHHHHHhHHHhHhhHhHHHHHHHHHHHHHH
Q 003570 329 KIQQQESMKSRECIESLATIKELESQSERLEDKIKQQSEEYSESLISINELECQVKELKRE 389 (810)
Q Consensus 329 q~q~Qeql~~~EcS~~~~~i~eLe~qve~LE~eLk~q~~efSesL~tI~eLE~qv~sLeeE 389 (810)
+ -..-.++.+|+-+-+.|-..|+.-++.+-.--+.+..++..|+..++.
T Consensus 806 ~------------lE~g~~~a~lr~~~~slk~~l~e~ar~Wasl~~~~~vl~e~l~~~ke~ 854 (984)
T COG4717 806 Q------------LEGGGTVAELRQRRESLKEDLEEKARKWASLRLAVQVLEEALRLFKER 854 (984)
T ss_pred H------------HhcCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
No 285
>PF06810 Phage_GP20: Phage minor structural protein GP20; InterPro: IPR009636 This family consists of several phage minor structural protein Gp20 sequences and prophage sequences of around 180 residues in length. The function of this family is unknown.; GO: 0005198 structural molecule activity
Probab=29.14 E-value=4.8e+02 Score=26.20 Aligned_cols=54 Identities=22% Similarity=0.367 Sum_probs=36.6
Q ss_pred HHHHHHHHHHHHHHHHHhHHHhHhhHhHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHh
Q 003570 349 KELESQSERLEDKIKQQSEEYSESLISINELECQVKELKRELDKQAQEFEDDIDAVTH 406 (810)
Q Consensus 349 ~eLe~qve~LE~eLk~q~~efSesL~tI~eLE~qv~sLeeEl~~Qaq~fe~Dldam~~ 406 (810)
..|++|+......|+. |...-..+.+|..+|..|+.........++.++..+.-
T Consensus 30 ~~~k~ql~~~d~~i~~----Lk~~~~d~eeLk~~i~~lq~~~~~~~~~~e~~l~~~~~ 83 (155)
T PF06810_consen 30 DNLKTQLKEADKQIKD----LKKSAKDNEELKKQIEELQAKNKTAKEEYEAKLAQMKK 83 (155)
T ss_pred HHHHHHHHHHHHHHHH----HHhccCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3344444444444433 33456778888999999999888888888888776654
No 286
>PF05791 Bacillus_HBL: Bacillus haemolytic enterotoxin (HBL); InterPro: IPR008414 This family consists of several Bacillus haemolytic enterotoxins (HblC, HblD, HblA, NheA, and NheB), which can cause food poisoning in humans []. Haemolysin BL (encoded by HBL) and non-haemolytic enterotoxin (encoded by NHE), represent the major enterotoxins produced by Bacillus cereus. Most of the cytotoxic activity of B. cereus isolates has been attributed to the level of Nhe, which may indicate a highly diarrheic potential []. The exact mechanism by which B. cereus causes diarrhoea is unknown. Hbl, cytotoxin K (CytK) and Nhe are all putative causes. Both Hbl and Nhe are three-component cytotoxins and maximal cytotoxicity of Nhe against epithelia is dependent on all three components. Nhe has haemolytic activity against erythrocytes from a variety of species. It is possible that the common structural and functional properties of these toxins indicate that the Hbl/Nhe and ClyA families of toxins constitute a superfamily of pore-forming cytotoxins []. The high virulence of some strains is thought to be due to the greater cytotoxic activity of CytK-1 compared to CytK-2, and to a high level of cytK expression []. Haemolysin BL and non-haemolytic enterotoxin production are both influenced by pH and micro []. This entry is found in cytotoxic proteins that form part of the enterotoxin complex and bind to erythrocytes. HblA is composed of a binding component, B, and two lytic components, L1 and L2. All three subunits act synergically to cause hemolysis.; GO: 0009405 pathogenesis, 0016020 membrane; PDB: 2NRJ_A.
Probab=29.07 E-value=3.4e+02 Score=27.58 Aligned_cols=73 Identities=26% Similarity=0.376 Sum_probs=54.3
Q ss_pred hhhhhhHHHHHHHHHHHHHHHHHHHHhhhccCchhHHHHhhHHHHHHHHHHHHHHHHhhhhHHHHHhhHHHHHHHHHHHH
Q 003570 587 NRERDDLEKKFASAKQEAAKAHEELISMRSLKGENEMLIGNLQAEVENLKVQQNKLQNSLIEEKLEKDNLAKQVFQLKDE 666 (810)
Q Consensus 587 ~~er~el~~~~a~~kkeae~~~~EL~~m~~~kdEkE~~i~~LqsE~e~lk~Q~~~LK~sL~~ee~EKe~l~kQv~qLk~e 666 (810)
+.-+..|...+.--...|.....+|..++ ..|..+..+|+.--+.+...|..+......|+++|..++++
T Consensus 109 ~~~i~~L~~~i~~~q~~~~~~i~~L~~f~----------~~l~~D~~~l~~~~~~l~~~l~~~~g~I~~L~~~I~~~~~~ 178 (184)
T PF05791_consen 109 KEIIEDLQDQIQKNQDKVQALINELNDFK----------DKLQKDSRNLKTDVDELQSILAGENGDIPQLQKQIENLNEE 178 (184)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHH----------HHHHHHHHHHHHHHHHHHHHHHHTT--HHHHHHHHHHHTGG
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH----------HHHHHHHHHHHHhHHHHHHHHhcccCCHHHHHHHHHHHHHH
Confidence 33455666667777777777777777665 35777888888888999999999999999999999998887
Q ss_pred HHh
Q 003570 667 LQK 669 (810)
Q Consensus 667 L~K 669 (810)
+++
T Consensus 179 I~~ 181 (184)
T PF05791_consen 179 IKK 181 (184)
T ss_dssp G-G
T ss_pred HHh
Confidence 764
No 287
>PF06428 Sec2p: GDP/GTP exchange factor Sec2p; InterPro: IPR009449 In Saccharomyces cerevisiae, Sec2p is a GDP/GTP exchange factor for Sec4p, which is required for vesicular transport at the post-Golgi stage of yeast secretion []. It catalyzes the dissociation of GDP from SEC4 and also potently promoting binding of GTP. Activation of SEC4 by SEC2 is needed for the directed transport of vesicles to sites of exocytosis. Binds the Rab GTPase YPT32, but does not have exhange activity on YPT32 [, , ].; PDB: 2EQB_C 2E7S_K 2OCY_A.
Probab=28.68 E-value=89 Score=29.58 Aligned_cols=73 Identities=29% Similarity=0.369 Sum_probs=42.8
Q ss_pred HHHhHHHHHHHHHHHHHHHHHhhhhhhhcccccCCCCCCcccchhhHHHhhhhhhhhhHHHHHHHHHHHHHHHHHHHHhh
Q 003570 535 KHEALSTEIHMLRTEIEKLRKEQYNLSEHGKRRDDNKPKVSTGETDMLIQKWNRERDDLEKKFASAKQEAAKAHEELISM 614 (810)
Q Consensus 535 ~~~a~s~EI~~Lk~eie~L~~e~~~l~e~~~~~d~e~~k~s~~e~~~~lq~~~~er~el~~~~a~~kkeae~~~~EL~~m 614 (810)
.-.....+...+..|++.|+. .||+.+ ++-+|.++++-..+......+
T Consensus 9 ~r~~ae~~~~~ie~ElEeLTa---sLFeEA-----------------------------N~MVa~ar~e~~~~e~k~~~l 56 (100)
T PF06428_consen 9 RREEAEQEKEQIESELEELTA---SLFEEA-----------------------------NKMVADARRERAALEEKNEQL 56 (100)
T ss_dssp HHHHHHHHHHHHHHHHHHHHH---HHHHHH-----------------------------HHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHH---HHHHHH-----------------------------HHHHHHHHHHHHHHHHHHHHH
Confidence 344556667777777777773 344433 333344444444444444445
Q ss_pred hccCchhHHHHhhHHHHHHHHHHHH
Q 003570 615 RSLKGENEMLIGNLQAEVENLKVQQ 639 (810)
Q Consensus 615 ~~~kdEkE~~i~~LqsE~e~lk~Q~ 639 (810)
...=.|++.+|..||.+|..||...
T Consensus 57 e~~l~e~~~~l~~lq~qL~~LK~v~ 81 (100)
T PF06428_consen 57 EKQLKEKEALLESLQAQLKELKTVM 81 (100)
T ss_dssp HHCTTHHCHCCCHCTSSSSHHHHCT
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 5555777788888877777766543
No 288
>KOG0979 consensus Structural maintenance of chromosome protein SMC5/Spr18, SMC superfamily [Chromatin structure and dynamics; Cell cycle control, cell division, chromosome partitioning; Replication, recombination and repair]
Probab=28.35 E-value=1.5e+03 Score=29.73 Aligned_cols=327 Identities=17% Similarity=0.137 Sum_probs=0.0
Q ss_pred CCCCCCCCcccc------cccCCCCCCCccccccccccccccccCCcccccCCCCCcccCCCCCCCCCC----------C
Q 003570 45 NNQEDPASLQSP------LRQNSVPQQGTVDAIKTHNHAHRRSNTDWSVGSISDGSLAESTNSPDDNLG----------S 108 (810)
Q Consensus 45 ~i~~~~~sf~s~------~~~~s~p~~~~v~~~~~~~~~h~rs~~dWS~~S~~d~S~~dStnssed~l~----------s 108 (810)
.||.-|-+-..+ ..++-..|+|.+.-.+.-|..|-.+.-.=+.||.+-.++++++-+.+=-.. -
T Consensus 555 ~ih~IPvs~~~~~e~~~~~~~~~r~~~~~~~~~~~i~g~~~~~i~~S~ygs~~v~~~~~~lk~~~f~~~~~~l~~~~~~~ 634 (1072)
T KOG0979|consen 555 KIHRIPVSKREVEEAIVEVLQNIRQPNGSVFLKRNIAGGRSKSIKKSAYGSRQVITRNDPLKSRNFFSVSPVLEELDNRI 634 (1072)
T ss_pred cccccccCcccccHHHHHHHhccccCCCchhHHHHhhcCchhhhhhhccccceeeecCCcchhhhhhccchHHHHHHHHH
Q ss_pred cchHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHhhhhhhHHHHHHhhHHhhhHHHHHHHHhhh------hhhhhHHHH
Q 003570 109 DGSVEKLKNEIAVMMRQVELSELELLSLRKQVAKESKRAQDQTRQIISLSSERDALTIECEQLRK------QNSIDIAEI 182 (810)
Q Consensus 109 d~~iEkLKsE~~~l~Rq~e~selELQtLRKQi~KESKRgqdLsrEv~~lk~ERD~Lk~EcEqLks------qk~~~ea~~ 182 (810)
++.+.+||+|+..+.-.-+..+-.++-.||.+...-+--.++-++-.-+..++-.+++.-+.+-. +..-.-+..
T Consensus 635 ee~~~~~~~~~~~~~~~~r~lee~~~k~~k~le~~~~~~~~~~~er~~~~~~~~~~~~r~~~ie~~~~~l~~qkee~~~~ 714 (1072)
T KOG0979|consen 635 EEEIQKLKAEIDIRSSTLRELEEKKQKERKELEEEQKKLKLLKRERTKLNSELKSYQQRKERIENLVVDLDRQEEEYAAS 714 (1072)
T ss_pred HHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_pred hhhhhhhh--hhHHHHHHHHHHhhhhhh---cchhhhhhhhhhhhhhHHHHHHHHHHHHHHHHhhhhhhhhhhhhhhhhh
Q 003570 183 ERRLQSEE--HLKFLQEEIREELNYEKE---VSAHLRLQLEKTQDSNAELILAVKDLNEMLEQKNMEISSLSSKLEESKL 257 (810)
Q Consensus 183 ~~~lq~e~--D~~~llEElr~EL~yEKe---lNaNL~LQLqKTQESNsELilAVqDLeeMLEqKn~EIs~ls~~~~e~~~ 257 (810)
..+.-... -....+.-...=+.--++ .+.|=.--+-.++-+|+|+---+-.+|.-+.+.+.--..+.
T Consensus 715 ~~~~I~~~~~~~~~~~~~~~~~~~k~~e~~i~~~~~~~~~~~s~~~~iea~~~i~~~e~~i~~~~~~~~~lk-------- 786 (1072)
T KOG0979|consen 715 EAKKILDTEDMRIQSIRWHLELTDKHKEIGIKEKNESSYMARSNKNNIEAERKIEKLEDNISFLEAREDLLK-------- 786 (1072)
T ss_pred HHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHH--------
Q ss_pred hhhhHHHHHHHHhhccCchhhHHHH-HHHHHhhhHHHHhhhhH-HHHHHHHHHHHHHHHHHHhhhhhhhhHHHHHHHHhh
Q 003570 258 VREDQLALEALAKERNKDKEVDMLK-QKIRDQGDEIQFFKKHA-EDLEIYIKQLTEDCQVLEQENQCLTSKLEKIQQQES 335 (810)
Q Consensus 258 ~~edq~ale~Lvke~~~~~E~~~Lk-qKI~DL~~Eie~ykker-EeLe~~ieQL~~D~E~LkqEN~~ls~kLEq~q~Qeq 335 (810)
..-++.++.....++ +-+.-+..++..+..+. |.+...|..++..---+-.=-..|+..+.+ +
T Consensus 787 ----------~a~~~~k~~a~~~~~~~~~~t~~~~~~s~~~~~~ek~~~~~~e~~e~p~t~~eld~~I~~e~t~-----~ 851 (1072)
T KOG0979|consen 787 ----------TALEDKKKEAAEKRKEQSLQTLKREIMSPATNKIEKSLVLMKELAEEPTTMDELDQAITDELTR-----A 851 (1072)
T ss_pred ----------HHHHHHHHHHHhcccchhHHHhhhccccccccchhhHHHHHHHHHhCCCcHHHHHHHHHHHHHH-----H
Q ss_pred hhh-hhhhhhHhhHHHHHHHHHHHHHHHHHHhHHHhHhhHhHHHHHHHHHHHHHHHHHHH
Q 003570 336 MKS-RECIESLATIKELESQSERLEDKIKQQSEEYSESLISINELECQVKELKRELDKQA 394 (810)
Q Consensus 336 l~~-~EcS~~~~~i~eLe~qve~LE~eLk~q~~efSesL~tI~eLE~qv~sLeeEl~~Qa 394 (810)
++| +=-+...-...-.+.++..|+.++..++.+...+-.-|+...+-.-.=.++|=.|+
T Consensus 852 ~~~~n~ne~~vq~y~~r~~el~~l~~~~~~~~~~le~i~~kl~~~ke~w~~~le~~V~~I 911 (1072)
T KOG0979|consen 852 LKFENVNEDAVQQYEVREDELRELETKLEKLSEDLERIKDKLSDVKEVWLPKLEEMVEQI 911 (1072)
T ss_pred HHHhcCChHHHHHHHHHHHHHHHHHhhhhhhhhhHHHHHHHHhhHHHHHHHHHHHHHHHH
No 289
>PLN02939 transferase, transferring glycosyl groups
Probab=28.08 E-value=1.4e+03 Score=29.56 Aligned_cols=45 Identities=27% Similarity=0.356 Sum_probs=31.4
Q ss_pred hHHHHHHHHHHHHHHhhhhhhhhHHHHHHHHHHHHHHHhhHHHHHHHHHHhHH
Q 003570 432 TAERLQDEFRRLSVDMASKFDENEKLAMKAMTEANEQRMQKAHLEEMLQKAND 484 (810)
Q Consensus 432 taErLQeEf~~LS~qmsSt~eeNEklt~kA~~EaseLR~qk~~LEemLqk~ne 484 (810)
-||+||.=+.+.+.|+.. +++ -+..-..||...-.||+.|..||-
T Consensus 301 ~~~~~~~~~~~~~~~~~~-------~~~-~~~~~~~~~~~~~~~~~~~~~~~~ 345 (977)
T PLN02939 301 KVENLQDLLDRATNQVEK-------AAL-VLDQNQDLRDKVDKLEASLKEANV 345 (977)
T ss_pred HHHHHHHHHHHHHHHHHH-------HHH-HhccchHHHHHHHHHHHHHHHhhH
Confidence 378888776666665532 221 255667899999999999999864
No 290
>KOG4196 consensus bZIP transcription factor MafK [Transcription]
Probab=27.84 E-value=1.4e+02 Score=30.11 Aligned_cols=25 Identities=24% Similarity=0.230 Sum_probs=23.0
Q ss_pred hHHHHHHhhHHhhhHHHHHHHHhhh
Q 003570 149 DQTRQIISLSSERDALTIECEQLRK 173 (810)
Q Consensus 149 dLsrEv~~lk~ERD~Lk~EcEqLks 173 (810)
-|..|++.++-|||+|+..|+.|-.
T Consensus 92 ~L~~e~s~~~~E~da~k~k~e~l~~ 116 (135)
T KOG4196|consen 92 KLKEENSRLRRELDAYKSKYEALQN 116 (135)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 4889999999999999999999876
No 291
>PF10146 zf-C4H2: Zinc finger-containing protein ; InterPro: IPR018482 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule. Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. This entry represents a family of proteins which appears to have a highly conserved zinc finger domain at the C-terminal end, described as -C-X2-CH-X3-H-X5-C-X2-C-. The structure is predicted to contain a coiled coil. Members of this family are annotated as being tumour-associated antigen HCA127 in humans, but this could not be confirmed.
Probab=27.36 E-value=8e+02 Score=26.35 Aligned_cols=35 Identities=34% Similarity=0.389 Sum_probs=14.4
Q ss_pred HHHHHHHHhHHHhHhhHhHHHHHHHHHHHHHHHHH
Q 003570 358 LEDKIKQQSEEYSESLISINELECQVKELKRELDK 392 (810)
Q Consensus 358 LE~eLk~q~~efSesL~tI~eLE~qv~sLeeEl~~ 392 (810)
||.-++....+-......|..+...+.-|..+++.
T Consensus 65 lE~iIkqa~~er~~~~~~i~r~~eey~~Lk~~in~ 99 (230)
T PF10146_consen 65 LENIIKQAESERNKRQEKIQRLYEEYKPLKDEINE 99 (230)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33333333333334444444444444444444433
No 292
>PF10205 KLRAQ: Predicted coiled-coil domain-containing protein; InterPro: IPR019343 This entry represents a N-terminal 100 residues long domain, which contains a conserved KLRAQ motif. This domain is found in a family of coiled-coil domain-containing proteins that are conserved from nematodes to humans. These proteins also contain a C-terminal TTKRSYEDQ motif domain (IPR019348 from INTERPRO). The function of these proteins is not known.
Probab=27.31 E-value=2.7e+02 Score=26.85 Aligned_cols=51 Identities=25% Similarity=0.388 Sum_probs=44.5
Q ss_pred hHHHHHHHHHHHHHHHHhhhhHHHHHhhHHHHHHHHHHHHHHhhHHHHHhh
Q 003570 627 NLQAEVENLKVQQNKLQNSLIEEKLEKDNLAKQVFQLKDELQKKKEEINRT 677 (810)
Q Consensus 627 ~LqsE~e~lk~Q~~~LK~sL~~ee~EKe~l~kQv~qLk~eL~KKe~~~~~~ 677 (810)
.|-.|---||+|+.-||..+.+++.--..|+.++-.-...|.|-+.++.++
T Consensus 2 kla~eYsKLraQ~~vLKKaVieEQ~k~~~L~e~Lk~ke~~LRk~eqE~dSL 52 (102)
T PF10205_consen 2 KLAQEYSKLRAQNQVLKKAVIEEQAKNAELKEQLKEKEQALRKLEQENDSL 52 (102)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 356778889999999999999999988888888888888888888888876
No 293
>PHA01750 hypothetical protein
Probab=27.27 E-value=1.7e+02 Score=26.63 Aligned_cols=36 Identities=33% Similarity=0.603 Sum_probs=27.1
Q ss_pred hHHHHHHHHHHHHHHHHhhhhHHHHHhhHHHHHHHHHHHHHHh
Q 003570 627 NLQAEVENLKVQQNKLQNSLIEEKLEKDNLAKQVFQLKDELQK 669 (810)
Q Consensus 627 ~LqsE~e~lk~Q~~~LK~sL~~ee~EKe~l~kQv~qLk~eL~K 669 (810)
-.++|+.+|+.|..++| .-.+|+..||-.+|..+.|
T Consensus 39 IV~~ELdNL~~ei~~~k-------ikqDnl~~qv~eik~k~dk 74 (75)
T PHA01750 39 IVNSELDNLKTEIEELK-------IKQDELSRQVEEIKRKLDK 74 (75)
T ss_pred HHHHHHHHHHHHHHHHH-------HhHHHHHHHHHHHHHhhcc
Confidence 35778888888888887 3456688999888877655
No 294
>PF06705 SF-assemblin: SF-assemblin/beta giardin
Probab=26.99 E-value=7.5e+02 Score=25.93 Aligned_cols=66 Identities=18% Similarity=0.252 Sum_probs=55.7
Q ss_pred hhhhHHHHHHHHHHHHHHhhhhhhhhHHHHHHHHHHHHHHHhhHHHHHHHHHH-hHHHHhhhhhhhh
Q 003570 429 NTVTAERLQDEFRRLSVDMASKFDENEKLAMKAMTEANEQRMQKAHLEEMLQK-ANDELSLIKDQNG 494 (810)
Q Consensus 429 na~taErLQeEf~~LS~qmsSt~eeNEklt~kA~~EaseLR~qk~~LEemLqk-~neeL~~i~dq~e 494 (810)
.+..+.+|-+++.+|...+..--..+|........+...+......=++.+|. +-+||.+|++.-.
T Consensus 148 E~~i~krl~e~~~~l~~~i~~Ek~~Re~~~~~l~~~le~~~~~~~~~~e~f~~~v~~Ei~~lk~~l~ 214 (247)
T PF06705_consen 148 EENILKRLEEEENRLQEKIEKEKNTRESKLSELRSELEEVKRRREKGDEQFQNFVLEEIAALKNALA 214 (247)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHH
Confidence 35667899999999999999999999999999999999998877777888887 8899988776443
No 295
>TIGR01005 eps_transp_fam exopolysaccharide transport protein family. The model describes the exopolysaccharide transport protein family in bacteria. The transport protein is part of a large genetic locus which is associated with exopolysaccharide (EPS) biosynthesis. Detailed molecular characterization and gene fusion analysis revealed atleast seven gene products are involved in the overall regulation, which among other things, include exopolysaccharide biosynthesis, property of conferring virulence and exopolysaccharide export.
Probab=26.94 E-value=1.2e+03 Score=28.19 Aligned_cols=29 Identities=10% Similarity=0.125 Sum_probs=20.8
Q ss_pred hhHHHHhhHHHHHHHHHHHHHHHHhhhhH
Q 003570 620 ENEMLIGNLQAEVENLKVQQNKLQNSLIE 648 (810)
Q Consensus 620 EkE~~i~~LqsE~e~lk~Q~~~LK~sL~~ 648 (810)
..+.-+..|+.+++..+..|+.|-..+-+
T Consensus 373 ~~~~e~~~L~Re~~~~~~~Y~~ll~r~~e 401 (754)
T TIGR01005 373 EQQVDLDALQRDAAAKRQLYESYLTNYRQ 401 (754)
T ss_pred HhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44667778888888888888777655543
No 296
>PRK10929 putative mechanosensitive channel protein; Provisional
Probab=26.74 E-value=1.6e+03 Score=29.55 Aligned_cols=19 Identities=16% Similarity=0.254 Sum_probs=10.0
Q ss_pred hhHHHHHHHHHHHHHHhhh
Q 003570 431 VTAERLQDEFRRLSVDMAS 449 (810)
Q Consensus 431 ~taErLQeEf~~LS~qmsS 449 (810)
....+++..+..|-..+..
T Consensus 215 ~~~~~l~~~~~~Lq~~in~ 233 (1109)
T PRK10929 215 KRSQQLDAYLQALRNQLNS 233 (1109)
T ss_pred HHHHHHHHHHHHHHHHHHH
Confidence 3445555555555555544
No 297
>PRK10869 recombination and repair protein; Provisional
Probab=26.57 E-value=1.1e+03 Score=27.86 Aligned_cols=81 Identities=20% Similarity=0.215 Sum_probs=53.2
Q ss_pred HHHHHHhHHHhHhhHhHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHhhhHHHHHHHHHHHHHHHHHhhhhhhhHHHHHHH
Q 003570 360 DKIKQQSEEYSESLISINELECQVKELKRELDKQAQEFEDDIDAVTHAKTEQEQRAIRAEEELRKTRWKNTVTAERLQDE 439 (810)
Q Consensus 360 ~eLk~q~~efSesL~tI~eLE~qv~sLeeEl~~Qaq~fe~Dldam~~~k~EQEqRAi~AEeaLrKtR~~na~taErLQeE 439 (810)
..+......|++....++.+-..+..+-.+|......++-|-..+.. -+.|. ..|++..-+|..+.+-+=.-
T Consensus 254 ~~~~~~d~~~~~~~~~l~~~~~~l~~~~~~l~~~~~~~~~dp~~l~~----ie~Rl----~~l~~L~rKyg~~~~~~~~~ 325 (553)
T PRK10869 254 SELIGMDSKLSGVLDMLEEALIQIQEASDELRHYLDRLDLDPNRLAE----LEQRL----SKQISLARKHHVSPEELPQH 325 (553)
T ss_pred HHHhhhCHhHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCHHHHHH----HHHHH----HHHHHHHHHhCCCHHHHHHH
Confidence 33444455677777888888888888888888887777666655432 23444 36777777787787776655
Q ss_pred HHHHHHHhh
Q 003570 440 FRRLSVDMA 448 (810)
Q Consensus 440 f~~LS~qms 448 (810)
+..+..+..
T Consensus 326 ~~~l~~eL~ 334 (553)
T PRK10869 326 HQQLLEEQQ 334 (553)
T ss_pred HHHHHHHHH
Confidence 555544443
No 298
>TIGR02680 conserved hypothetical protein TIGR02680. Members of this protein family belong to a conserved gene four-gene neighborhood found sporadically in a phylogenetically broad range of bacteria: Nocardia farcinica, Symbiobacterium thermophilum, and Streptomyces avermitilis (Actinobacteria), Geobacillus kaustophilus (Firmicutes), Azoarcus sp. EbN1 and Ralstonia solanacearum (Betaproteobacteria). Proteins in this family average over 1400 amino acids in length.
Probab=26.30 E-value=1.6e+03 Score=29.62 Aligned_cols=24 Identities=17% Similarity=0.145 Sum_probs=9.9
Q ss_pred HHHhhhhchhhhhHHhhhHHHHHH
Q 003570 514 MYLELDHSSSQLIDEHKSEAQKHE 537 (810)
Q Consensus 514 m~~Ele~kS~qle~~kk~~ee~~~ 537 (810)
...+++...+++...++.-.+...
T Consensus 457 ~~~~~~~~~~el~~~~~~~~e~~~ 480 (1353)
T TIGR02680 457 THAAARARRDELDEEAEQAAARAE 480 (1353)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333444444444444444333333
No 299
>PF02183 HALZ: Homeobox associated leucine zipper; InterPro: IPR003106 This region is a plant specific leucine zipper that is always found associated with a homeobox []. ; GO: 0003677 DNA binding, 0006355 regulation of transcription, DNA-dependent, 0005634 nucleus
Probab=26.30 E-value=1.3e+02 Score=24.72 Aligned_cols=31 Identities=19% Similarity=0.344 Sum_probs=18.2
Q ss_pred hHHHHHHHHHHHHHHHHHHHhhhhhhhhHHH
Q 003570 298 HAEDLEIYIKQLTEDCQVLEQENQCLTSKLE 328 (810)
Q Consensus 298 erEeLe~~ieQL~~D~E~LkqEN~~ls~kLE 328 (810)
|.+.|...-+.|..+|+.|.++|..|...+.
T Consensus 6 Dy~~LK~~yd~Lk~~~~~L~~E~~~L~aev~ 36 (45)
T PF02183_consen 6 DYDALKASYDSLKAEYDSLKKENEKLRAEVQ 36 (45)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4555666666666666666666666554443
No 300
>PF10186 Atg14: UV radiation resistance protein and autophagy-related subunit 14; InterPro: IPR018791 Class III phosphatidylinositol 3-kinase (PI3-kinase) regulates multiple membrane trafficking. In yeast, two distinct PI3-kinase complexes are known: complex I (Vps34, Vps15, Vps30/Atg6, and Atg14) is involved in autophagy, and complex II (Vps34, Vps15, Vps30/Atg6, and Vps38) functions in the vacuolar protein sorting pathway. In mammals, the counterparts of Vps34, Vps15, and Vps30/Atg6 are Vps34, p150, and Beclin 1, respectively. Mammalian UV irradiation resistance-associated gene (UVRAG) has been identified as identical to yeast Vps38 []. The Atg14 (autophagy-related protein 14) proteins are hydrophilic proteins and have a coiled-coil motif at the N terminus region. Yeast cells with mutant Atg14 are defective not only in autophagy but also in sorting of carboxypeptidase Y (CPY), a vacuolar-soluble hydrolase, to the vacuole []. This entry represents Atg14 and UVRAG, which bind Beclin 1 to forms two distinct PI3-kinase complexes. This entry also includes Bakor (beclin-1-associated autophagy-related key regulator), also known as autophagy-related protein 14-like protein, which share sequence similarity to the yeast Atg14 protein []. Barkor positively regulates autophagy through its interaction with Beclin-1, with decreased levels of autophagosome formation observed when Barkor expression is eliminated []. Autophagy mediates the cellular response to nutrient deprivation, protein aggregation, and pathogen invasion in humans, and malfunction of autophagy has been implicated in multiple human diseases including cancer. ; GO: 0010508 positive regulation of autophagy
Probab=25.98 E-value=7.4e+02 Score=25.52 Aligned_cols=28 Identities=25% Similarity=0.423 Sum_probs=17.5
Q ss_pred HHHHhhhHHHHhhhhHHHHHHHHHHHHH
Q 003570 284 KIRDQGDEIQFFKKHAEDLEIYIKQLTE 311 (810)
Q Consensus 284 KI~DL~~Eie~ykkerEeLe~~ieQL~~ 311 (810)
+|.++...|...+.+++.|..+|++.-.
T Consensus 21 ~L~~~~~~l~~~~~~~~~l~~~i~~~l~ 48 (302)
T PF10186_consen 21 RLLELRSELQQLKEENEELRRRIEEILE 48 (302)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4666666666666666777776666543
No 301
>TIGR02894 DNA_bind_RsfA transcription factor, RsfA family. In a subset of endospore-forming members of the Firmcutes, members of this protein family are found, several to a genome. Two very strongly conserved sequences regions are separated by a highly variable linker region. Much of the linker region was excised from the seed alignment for this model. A characterized member is the prespore-specific transcription RsfA from Bacillus subtilis, previously called YwfN, which is controlled by sigma factor F and seems to fine-tune expression of some genes in the sigma-F regulon. A paralog in Bacillus subtilis is designated YlbO.
Probab=25.60 E-value=4.9e+02 Score=26.96 Aligned_cols=66 Identities=17% Similarity=0.302 Sum_probs=41.9
Q ss_pred hhhhhhhhhHhhHHHHHHHHHHHHHHHHHHhHHHhHhhHhHHHHHHHHHHHHHHHHHHHHHHHhhHHHHH
Q 003570 336 MKSRECIESLATIKELESQSERLEDKIKQQSEEYSESLISINELECQVKELKRELDKQAQEFEDDIDAVT 405 (810)
Q Consensus 336 l~~~EcS~~~~~i~eLe~qve~LE~eLk~q~~efSesL~tI~eLE~qv~sLeeEl~~Qaq~fe~Dldam~ 405 (810)
|-|..|.+.+-++...-.+...+..+.+....+.-.--..+..|+..+..|++++.. +..|-.+|.
T Consensus 80 ltl~~vI~fLq~l~~~~~~~~~~~~e~~~l~~e~~~l~~~~e~Le~e~~~L~~~~~~----~~eDY~~L~ 145 (161)
T TIGR02894 80 LTLQDVISFLQNLKTTNPSDQALQKENERLKNQNESLQKRNEELEKELEKLRQRLST----IEEDYQTLI 145 (161)
T ss_pred CCHHHHHHHHHHHHhcchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHH
Confidence 445667777777776666667777777666666665556667777777766666543 444444443
No 302
>PF14817 HAUS5: HAUS augmin-like complex subunit 5
Probab=25.49 E-value=1e+03 Score=29.26 Aligned_cols=130 Identities=15% Similarity=0.231 Sum_probs=0.0
Q ss_pred CCCCCCCCC--------CcchHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHhhhh-----hhHHHHHHhhHHhhhHHH
Q 003570 99 TNSPDDNLG--------SDGSVEKLKNEIAVMMRQVELSELELLSLRKQVAKESKRA-----QDQTRQIISLSSERDALT 165 (810)
Q Consensus 99 tnssed~l~--------sd~~iEkLKsE~~~l~Rq~e~selELQtLRKQi~KESKRg-----qdLsrEv~~lk~ERD~Lk 165 (810)
++++-..+| -...+..+=.+...+...+....-.|+.+-..+.+....+ -.+.+++.++++.+++|+
T Consensus 292 ~s~~~~~lpsv~~Llqe~~a~v~q~~~e~~~l~~eaq~l~~~L~~~~~e~~~~~~~~s~~~al~~ele~~~l~A~l~~L~ 371 (632)
T PF14817_consen 292 VSDESQALPSVHQLLQEQWAHVQQFLAEEDALNKEAQALSQRLQRLLEEIERRLSGSSEREALALELEVAGLKASLNALR 371 (632)
T ss_pred CCCCccccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccCcchhhHHHHHHHHHHHHHHHHHHH
Q ss_pred HHHHHhhh---hhhhhHHHHhhhhhhhhhhHHHHHHHHHHhhhhhhcchhhhhhhhhhhhhhHHHH
Q 003570 166 IECEQLRK---QNSIDIAEIERRLQSEEHLKFLQEEIREELNYEKEVSAHLRLQLEKTQDSNAELI 228 (810)
Q Consensus 166 ~EcEqLks---qk~~~ea~~~~~lq~e~D~~~llEElr~EL~yEKelNaNL~LQLqKTQESNsELi 228 (810)
.+|..|+. .+.-....-..+-|..-|++.++.+..+=+.--=-=|.+++=+|.+.+...-++|
T Consensus 372 se~q~L~~~~~~r~e~~~~Lq~K~q~I~~frqlv~e~QeqIr~LiK~Nsaakt~L~q~~~E~~~~~ 437 (632)
T PF14817_consen 372 SECQRLKEAAAERQEALRSLQAKWQRILDFRQLVSEKQEQIRALIKGNSAAKTQLEQSPAEAQEFV 437 (632)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHhChHHHHHHH
No 303
>PF04642 DUF601: Protein of unknown function, DUF601; InterPro: IPR006736 This family consists of several uncharacterised plant proteins which share a conserved region.
Probab=25.41 E-value=3.3e+02 Score=30.27 Aligned_cols=46 Identities=28% Similarity=0.390 Sum_probs=31.4
Q ss_pred HHHHhhhHHHHhhh----------hHHHHHHHHHHHHHHHHHHHhhhhhhhhHHHH
Q 003570 284 KIRDQGDEIQFFKK----------HAEDLEIYIKQLTEDCQVLEQENQCLTSKLEK 329 (810)
Q Consensus 284 KI~DL~~Eie~ykk----------erEeLe~~ieQL~~D~E~LkqEN~~ls~kLEq 329 (810)
+|+|+..||+.||. ..-..--.|..++.-|..|.-.|.+|+.+|+.
T Consensus 187 ~l~dkekEl~sfK~sEeeNar~V~kAnsVldRmk~aEaqvneLEvsN~DLsaKLe~ 242 (311)
T PF04642_consen 187 QLSDKEKELESFKRSEEENARAVEKANSVLDRMKEAEAQVNELEVSNIDLSAKLEP 242 (311)
T ss_pred ccccHHHHHHHHhhhhhhhHHHHHHHHHHHHHHHHHHhhhhheecccHHHHHhhcC
Confidence 45555556666661 11233446778888888888889999988877
No 304
>PRK13169 DNA replication intiation control protein YabA; Reviewed
Probab=25.40 E-value=2.2e+02 Score=27.53 Aligned_cols=47 Identities=26% Similarity=0.307 Sum_probs=35.2
Q ss_pred hhHHHHHHHHHhhhHHHHhhhhHHHHHHHHHHHHHHHHHHHhhhhhhhhHHHHH
Q 003570 277 EVDMLKQKIRDQGDEIQFFKKHAEDLEIYIKQLTEDCQVLEQENQCLTSKLEKI 330 (810)
Q Consensus 277 E~~~LkqKI~DL~~Eie~ykkerEeLe~~ieQL~~D~E~LkqEN~~ls~kLEq~ 330 (810)
.+..|++.|..++. +...|..+|.+|-.++-.|+-||..|..+|.+.
T Consensus 9 ~l~~le~~l~~l~~-------el~~LK~~~~el~EEN~~L~iEN~~Lr~~l~~~ 55 (110)
T PRK13169 9 ALDDLEQNLGVLLK-------ELGALKKQLAELLEENTALRLENDKLRERLEEL 55 (110)
T ss_pred HHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 34455555555554 445688888899999999999999998888873
No 305
>PF14282 FlxA: FlxA-like protein
Probab=25.24 E-value=3.8e+02 Score=25.17 Aligned_cols=50 Identities=20% Similarity=0.316 Sum_probs=32.1
Q ss_pred HHHHHHHHHHHHHHHHHHHhhhccC----chhHHHHhhHHHHHHHHHHHHHHHH
Q 003570 594 EKKFASAKQEAAKAHEELISMRSLK----GENEMLIGNLQAEVENLKVQQNKLQ 643 (810)
Q Consensus 594 ~~~~a~~kkeae~~~~EL~~m~~~k----dEkE~~i~~LqsE~e~lk~Q~~~LK 643 (810)
...|+.|++....+.++|..+..-+ ++|...+..|+.+|..|.+|.-.|.
T Consensus 18 ~~~I~~L~~Qi~~Lq~ql~~l~~~~~~~~e~k~~q~q~Lq~QI~~LqaQI~qlq 71 (106)
T PF14282_consen 18 DSQIEQLQKQIKQLQEQLQELSQDSDLDAEQKQQQIQLLQAQIQQLQAQIAQLQ 71 (106)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHcccCCCHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3456666666666666666666632 3667777777777777777765443
No 306
>PF15035 Rootletin: Ciliary rootlet component, centrosome cohesion
Probab=25.16 E-value=7.2e+02 Score=25.71 Aligned_cols=24 Identities=13% Similarity=0.196 Sum_probs=20.8
Q ss_pred hhhhhhHhhHHHHHHHHHHHHHHH
Q 003570 339 RECIESLATIKELESQSERLEDKI 362 (810)
Q Consensus 339 ~EcS~~~~~i~eLe~qve~LE~eL 362 (810)
.-++.+++-|.+++.+|.-||..+
T Consensus 16 ~Lv~~LQ~KV~qYr~rc~ele~~l 39 (182)
T PF15035_consen 16 QLVQRLQAKVLQYRKRCAELEQQL 39 (182)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 557888888999999999999988
No 307
>PF10498 IFT57: Intra-flagellar transport protein 57 ; InterPro: IPR019530 Eukaryotic cilia and flagella are specialised organelles found at the periphery of cells of diverse organisms. Intra-flagellar transport (IFT) is required for the assembly and maintenance of eukaryotic cilia and flagella, and consists of the bi-directional movement of large protein particles between the base and the distal tip of the organelle. IFT particles contain multiple copies of two distinct protein complexes, A and B, which contain at least 6 and 11 protein subunits. IFT57 is part of complex B but is not, however, required for the core subunits to stay associated []. This protein is known as Huntington-interacting protein-1 in humans.
Probab=24.70 E-value=4.4e+02 Score=29.87 Aligned_cols=126 Identities=14% Similarity=0.202 Sum_probs=0.0
Q ss_pred HHHHHhhHHHHHHHHHHhHHHHhhhhhhhhccHHHHhHHHhhHHHHHHHHHHhhhhchhhhhHHhhhHHHHHHhHHHHHH
Q 003570 465 ANEQRMQKAHLEEMLQKANDELSLIKDQNGVKLQELSDQLEQKDKQIQKMYLELDHSSSQLIDEHKSEAQKHEALSTEIH 544 (810)
Q Consensus 465 aseLR~qk~~LEemLqk~neeL~~i~dq~e~kl~eL~~qld~k~k~ie~m~~Ele~kS~qle~~kk~~ee~~~a~s~EI~ 544 (810)
....+..+..++..+-.+...|..+..+-..-|+.+.+.=..-..|++.++.+......+| ..+.....
T Consensus 222 leqm~~~~~~I~~~~~~~~~~L~kl~~~i~~~lekI~sREk~iN~qle~l~~eYr~~~~~l-----------s~~~~~y~ 290 (359)
T PF10498_consen 222 LEQMKQHKKSIESALPETKSQLDKLQQDISKTLEKIESREKYINNQLEPLIQEYRSAQDEL-----------SEVQEKYK 290 (359)
T ss_pred HHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHH-----------HHHHHHHH
Q ss_pred HHHHHHHHHHHhhhhhhhcccccCCCCCCcccchhhHHHhhhhhhhhhHHHHHHHHHHHHHHHHHHHHhh
Q 003570 545 MLRTEIEKLRKEQYNLSEHGKRRDDNKPKVSTGETDMLIQKWNRERDDLEKKFASAKQEAAKAHEELISM 614 (810)
Q Consensus 545 ~Lk~eie~L~~e~~~l~e~~~~~d~e~~k~s~~e~~~~lq~~~~er~el~~~~a~~kkeae~~~~EL~~m 614 (810)
.+-.-+..++.+.+.+++.. |+.|..+++.-..+.++.--.. +|+-..+...|+..|
T Consensus 291 ~~s~~V~~~t~~L~~IseeL-----e~vK~emeerg~~mtD~sPlv~--------IKqAl~kLk~EI~qM 347 (359)
T PF10498_consen 291 QASEGVSERTRELAEISEEL-----EQVKQEMEERGSSMTDGSPLVK--------IKQALTKLKQEIKQM 347 (359)
T ss_pred HHhhHHHHHHHHHHHHHHHH-----HHHHHHHHHhcCCCCCCCHHHH--------HHHHHHHHHHHHHHh
No 308
>PF02346 Vac_Fusion: Chordopoxvirus fusion protein; InterPro: IPR003436 This is a family of viral fusion proteins from the Chordopoxvirinae. A 14kDa Vaccinia virus protein has been demonstrated to function as a viral fusion protein mediating cell fusion at endosmomal (low) pH []. The protein, found in the envelope fraction of the virions, is required for fusing the outermost of the two golgi-derived membranes enveloping the virus with the plasma membrane, and its subsequent release extracellularly. The N-terminal proximal region is essential for its fusion ability.; GO: 0019064 viral envelope fusion with host membrane, 0019031 viral envelope
Probab=24.60 E-value=3.1e+02 Score=24.00 Aligned_cols=43 Identities=23% Similarity=0.373 Sum_probs=37.4
Q ss_pred HHHHHHHHHHHHHHHHHHhHHHhHhhHhHHHHHHHHHHHHHHH
Q 003570 348 IKELESQSERLEDKIKQQSEEYSESLISINELECQVKELKREL 390 (810)
Q Consensus 348 i~eLe~qve~LE~eLk~q~~efSesL~tI~eLE~qv~sLeeEl 390 (810)
+.+++..+..||..+++..+.++..-.+|.-||.++.+|.+-|
T Consensus 3 ~k~~~~rl~~Lek~~~~~~~~c~~~~~~i~RLE~H~ETlRk~m 45 (57)
T PF02346_consen 3 IKDIEERLMVLEKDFRNAIKCCKENSEAIKRLEHHIETLRKYM 45 (57)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHH
Confidence 5677788888999999999999999999999999999988765
No 309
>KOG0240 consensus Kinesin (SMY1 subfamily) [Cytoskeleton]
Probab=24.58 E-value=1.4e+03 Score=28.18 Aligned_cols=49 Identities=16% Similarity=0.230 Sum_probs=31.5
Q ss_pred hHhhHhHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHhhhHHHHHHHHHHHHHHHHH
Q 003570 370 SESLISINELECQVKELKRELDKQAQEFEDDIDAVTHAKTEQEQRAIRAEEELRKT 425 (810)
Q Consensus 370 SesL~tI~eLE~qv~sLeeEl~~Qaq~fe~Dldam~~~k~EQEqRAi~AEeaLrKt 425 (810)
+-|-.++--++.+.+.+... +...|..+..--.-|..|+..++.-|++.
T Consensus 495 el~~~~~~~~~~~~~~~~~n-------~~sel~sl~~~~~~~~~r~~~~~~~l~~~ 543 (607)
T KOG0240|consen 495 ELAVNYDQKSEEKESKLSQN-------LKSELQSLQEPSEHQSKRITELLSELRKD 543 (607)
T ss_pred HHHHhhhHHHHHHhhhhhhh-------hHHHHHhhhhcccchhHHHHHHHHHHHhh
Confidence 33444444455555444443 66777777777778888888887777764
No 310
>cd00632 Prefoldin_beta Prefoldin beta; Prefoldin is a hexameric molecular chaperone complex, composed of two evolutionarily related subunits (alpha and beta), which are found in both eukaryotes and archaea. Prefoldin binds and stabilizes newly synthesized polypeptides allowing them to fold correctly. The hexameric structure consists of a double beta barrel assembly with six protruding coiled-coils. The alpha prefoldin subunits have two beta hairpin structures while the beta prefoldin subunits (this CD) have only one hairpin that is most similar to the second hairpin of the alpha subunit. The prefoldin hexamer consists of two alpha and four beta subunits and is assembled from the beta hairpins of all six subunits. The alpha subunits initially dimerize providing a structural nucleus for the assembly of the beta subunits. In archaea, there is usually only one gene for each subunit while in eukaryotes there two or more paralogous genes encoding each subunit adding heterogeneity to the st
Probab=24.51 E-value=5.6e+02 Score=23.57 Aligned_cols=44 Identities=25% Similarity=0.369 Sum_probs=30.8
Q ss_pred ccCchhhHHHHHHHHHhhhHHHHhhhhHHHHHHHHHHHHHHHHH
Q 003570 272 RNKDKEVDMLKQKIRDQGDEIQFFKKHAEDLEIYIKQLTEDCQV 315 (810)
Q Consensus 272 ~~~~~E~~~LkqKI~DL~~Eie~ykkerEeLe~~ieQL~~D~E~ 315 (810)
...++.+..|+.++..+..+|..+.+..+.+..+|..+......
T Consensus 59 ~~~~ea~~~Le~~~e~le~~i~~l~~~~~~l~~~~~elk~~l~~ 102 (105)
T cd00632 59 QEKEEARTELKERLETIELRIKRLERQEEDLQEKLKELQEKIQQ 102 (105)
T ss_pred ccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33456777888888888777777777777777777776665443
No 311
>PF04977 DivIC: Septum formation initiator; InterPro: IPR007060 DivIC, from the spore-forming, Gram-positive bacterium Bacillus subtilis, is necessary for both vegetative and sporulation septum formation []. These proteins are mainly composed of an N-terminal coiled-coil. DivIB, DivIC and FtsL inter-depend on each other for stabilisation and localisation. The latter two form a heterodimer. DivIC is always centre cell but the other two associate with it during septation [].; GO: 0007049 cell cycle
Probab=24.51 E-value=1.6e+02 Score=24.82 Aligned_cols=39 Identities=31% Similarity=0.365 Sum_probs=28.4
Q ss_pred hhhHHHHHHHHHhhhHHHHhhhhHHHHHHHHHHHHHHHH
Q 003570 276 KEVDMLKQKIRDQGDEIQFFKKHAEDLEIYIKQLTEDCQ 314 (810)
Q Consensus 276 ~E~~~LkqKI~DL~~Eie~ykkerEeLe~~ieQL~~D~E 314 (810)
..+..+++.|.++..+++..+.+++.|...++.|..|-+
T Consensus 17 ~~~~~~~~ei~~l~~~i~~l~~e~~~L~~ei~~l~~~~~ 55 (80)
T PF04977_consen 17 SRYYQLNQEIAELQKEIEELKKENEELKEEIERLKNDPD 55 (80)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCHH
Confidence 355677777888888888888888888888888833333
No 312
>PRK11546 zraP zinc resistance protein; Provisional
Probab=24.32 E-value=5.1e+02 Score=26.25 Aligned_cols=57 Identities=16% Similarity=0.218 Sum_probs=46.1
Q ss_pred hhhHHHHHHHHHHHHHHHHHHHHhhhccCchhHHHHhhHHHHHHHHHHHHHHHHhhh
Q 003570 590 RDDLEKKFASAKQEAAKAHEELISMRSLKGENEMLIGNLQAEVENLKVQQNKLQNSL 646 (810)
Q Consensus 590 r~el~~~~a~~kkeae~~~~EL~~m~~~kdEkE~~i~~LqsE~e~lk~Q~~~LK~sL 646 (810)
+++-..+.+-|+.+.-....||+.+-....=.+..|+.|..||..|+.+..++.-.+
T Consensus 56 ~~~f~~~t~~LRqqL~aKr~ELnALl~~~~pD~~kI~aL~kEI~~Lr~kL~e~r~~~ 112 (143)
T PRK11546 56 HNDFYAQTSALRQQLVSKRYEYNALLTANPPDSSKINAVAKEMENLRQSLDELRVKR 112 (143)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 355556677788888888999999888777778899999999999999888776543
No 313
>PF06160 EzrA: Septation ring formation regulator, EzrA ; InterPro: IPR010379 During the bacterial cell cycle, the tubulin-like cell-division protein FtsZ polymerises into a ring structure that establishes the location of the nascent division site. EzrA modulates the frequency and position of FtsZ ring formation [].; GO: 0000921 septin ring assembly, 0005940 septin ring, 0016021 integral to membrane
Probab=23.88 E-value=1.3e+03 Score=27.49 Aligned_cols=55 Identities=20% Similarity=0.327 Sum_probs=25.5
Q ss_pred HHHHHhhhhhhhHHHHHHHHHHHHHHhhhhhhhhHHHHHHHHHHHHHHHhhHHHHHHHHHHhHHHHh
Q 003570 421 ELRKTRWKNTVTAERLQDEFRRLSVDMASKFDENEKLAMKAMTEANEQRMQKAHLEEMLQKANDELS 487 (810)
Q Consensus 421 aLrKtR~~na~taErLQeEf~~LS~qmsSt~eeNEklt~kA~~EaseLR~qk~~LEemLqk~neeL~ 487 (810)
.|..++-+| ..|..|+.+|+.-- .+..+|--..+. +-.+...|+..+......+.
T Consensus 314 ~l~~~~~~~----~~l~~e~~~v~~sY--~L~~~e~~~~~~------l~~~l~~l~~~~~~~~~~i~ 368 (560)
T PF06160_consen 314 YLEHAKEQN----KELKEELERVSQSY--TLNHNELEIVRE------LEKQLKELEKRYEDLEERIE 368 (560)
T ss_pred HHHHHHHHH----HHHHHHHHHHHHhc--CCCchHHHHHHH------HHHHHHHHHHHHHHHHHHHH
Confidence 555555444 34555666655433 455555433333 33344444444444444433
No 314
>TIGR00414 serS seryl-tRNA synthetase. This model represents the seryl-tRNA synthetase found in most organisms. This protein is a class II tRNA synthetase, and is recognized by the pfam model tRNA-synt_2b. The seryl-tRNA synthetases of two archaeal species, Methanococcus jannaschii and Methanobacterium thermoautotrophicum, differ considerably and are included in a different model.
Probab=23.65 E-value=3.4e+02 Score=30.96 Aligned_cols=67 Identities=21% Similarity=0.166 Sum_probs=42.5
Q ss_pred HHHHhhhhhhhHHHHHHHHHHHHHHhhhhhhhhHHHHHHHHHHHHHHHhhHHHHHHHHHHhHHHHhh
Q 003570 422 LRKTRWKNTVTAERLQDEFRRLSVDMASKFDENEKLAMKAMTEANEQRMQKAHLEEMLQKANDELSL 488 (810)
Q Consensus 422 LrKtR~~na~taErLQeEf~~LS~qmsSt~eeNEklt~kA~~EaseLR~qk~~LEemLqk~neeL~~ 488 (810)
|.+.|-+--..+++|+.+...+|.+|...-...+..+-..+.++.+|+.+...||+.+..+.+++..
T Consensus 35 ld~~~r~~~~~~~~l~~erN~~sk~i~~~~~~~~~~~~~l~~~~~~l~~~~~~~~~~~~~~~~~~~~ 101 (418)
T TIGR00414 35 LDDERKKLLSEIEELQAKRNELSKQIGKAKGQKKDKIEEIKKELKELKEELTELSAALKALEAELQD 101 (418)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3333444445678899999999999976333333223345566777777777777777666665554
No 315
>PRK08476 F0F1 ATP synthase subunit B'; Validated
Probab=23.50 E-value=6.9e+02 Score=24.30 Aligned_cols=44 Identities=16% Similarity=0.282 Sum_probs=29.6
Q ss_pred HHHHHHHHHHHHHHhhHHHHHhhhHHHHHHHHHHHHHHHHHhhh
Q 003570 385 ELKRELDKQAQEFEDDIDAVTHAKTEQEQRAIRAEEELRKTRWK 428 (810)
Q Consensus 385 sLeeEl~~Qaq~fe~Dldam~~~k~EQEqRAi~AEeaLrKtR~~ 428 (810)
-+.+=|....+....+++.....+.+-+.....+++.|+.+|-.
T Consensus 31 Pi~~~l~~R~~~I~~~l~~A~~~~~ea~~~~~e~e~~l~~Ar~e 74 (141)
T PRK08476 31 PLLKFMDNRNASIKNDLEKVKTNSSDVSEIEHEIETILKNAREE 74 (141)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34444556666677777777777777777777777777777755
No 316
>PF14931 IFT20: Intraflagellar transport complex B, subunit 20
Probab=23.32 E-value=5.8e+02 Score=24.93 Aligned_cols=88 Identities=18% Similarity=0.174 Sum_probs=61.8
Q ss_pred HHHHHHHhHHHHhhhhhhhhccHHHHhHHHhhHHHHHHHHHHhh-------hhchhhhhHHhhhHHHHHHhHHHHHHHHH
Q 003570 475 LEEMLQKANDELSLIKDQNGVKLQELSDQLEQKDKQIQKMYLEL-------DHSSSQLIDEHKSEAQKHEALSTEIHMLR 547 (810)
Q Consensus 475 LEemLqk~neeL~~i~dq~e~kl~eL~~qld~k~k~ie~m~~El-------e~kS~qle~~kk~~ee~~~a~s~EI~~Lk 547 (810)
|+--..+...+|...-..|-.|+.++.+-+..-...++.+...+ =-..+.+....++++.....+..-|...+
T Consensus 14 ldp~~~~~t~~Lk~ec~~F~~ki~~F~~iv~~~~~~~~~~A~~VE~eKlkAIG~RN~l~s~~k~R~~~~q~lq~~I~Ek~ 93 (120)
T PF14931_consen 14 LDPEKADQTQELKEECKEFVEKISEFQKIVKGFIEILDELAKRVENEKLKAIGARNLLKSEAKQREAQQQQLQALIAEKK 93 (120)
T ss_pred cChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHhHHHHHHHHHHHHHHHH
Confidence 34444455566666666677777776655554444444444333 34577888888999999999999999999
Q ss_pred HHHHHHHHhhhhhhh
Q 003570 548 TEIEKLRKEQYNLSE 562 (810)
Q Consensus 548 ~eie~L~~e~~~l~e 562 (810)
.++++|..|..+|..
T Consensus 94 ~eLERl~~E~~sL~k 108 (120)
T PF14931_consen 94 MELERLRSEYESLQK 108 (120)
T ss_pred HHHHHHHHHHHHHHH
Confidence 999999999888743
No 317
>KOG1962 consensus B-cell receptor-associated protein and related proteins [Defense mechanisms]
Probab=23.10 E-value=1.9e+02 Score=31.04 Aligned_cols=50 Identities=16% Similarity=0.285 Sum_probs=37.2
Q ss_pred HHHHHHHHHhhhHHHHhhhhHHHHHHHHHHHHHHHHHHHhhhhhhhhHHH
Q 003570 279 DMLKQKIRDQGDEIQFFKKHAEDLEIYIKQLTEDCQVLEQENQCLTSKLE 328 (810)
Q Consensus 279 ~~LkqKI~DL~~Eie~ykkerEeLe~~ieQL~~D~E~LkqEN~~ls~kLE 328 (810)
..|+.++.....+++-..++.+.|..|.+.+..+|..|..+|..++..++
T Consensus 161 ~kL~~el~~~~~~Le~~~~~~~al~Kq~e~~~~EydrLlee~~~Lq~~i~ 210 (216)
T KOG1962|consen 161 EKLETELEKKQKKLEKAQKKVDALKKQSEGLQDEYDRLLEEYSKLQEQIE 210 (216)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHh
Confidence 44444444445555555678999999999999999999998888776554
No 318
>PRK09841 cryptic autophosphorylating protein tyrosine kinase Etk; Provisional
Probab=22.86 E-value=1.4e+03 Score=27.75 Aligned_cols=24 Identities=17% Similarity=0.095 Sum_probs=14.1
Q ss_pred hhHHHHhhHHHHHHHHHHHHHHHH
Q 003570 620 ENEMLIGNLQAEVENLKVQQNKLQ 643 (810)
Q Consensus 620 EkE~~i~~LqsE~e~lk~Q~~~LK 643 (810)
..+..+..|+.+++..+..|..|-
T Consensus 367 ~~e~~~~~L~R~~~~~~~lY~~lL 390 (726)
T PRK09841 367 STQQEVLRLSRDVEAGRAVYLQLL 390 (726)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 345555666666666666665543
No 319
>PF02050 FliJ: Flagellar FliJ protein; InterPro: IPR012823 Many flagellar proteins are exported by a flagellum-specific export pathway. Attempts have been made to characterise the apparatus responsible for this process, by designing assays to screen for mutants with export defects []. Experiments involving filament removal from temperature-sensitive flagellar mutants of Salmonella typhimurium have shown that, while most mutants were able to regrow filaments, flhA, fliH, fliI and fliN mutants showed no or greatly reduced regrowth. This suggests that the corresponding gene products are involved in the process of flagellum-specific export. The sequences of fliH, fliI and the adjacent gene, fliJ, have been deduced. FliJ was shown to encode a protein of molecular mass 17,302 Da []. It is a membrane-associated protein that affects chemotactic events, mutations in FliJ result in failure to respond to chemotactic stimuli.; GO: 0003774 motor activity, 0001539 ciliary or flagellar motility, 0006935 chemotaxis, 0009288 bacterial-type flagellum, 0016020 membrane, 0044461 bacterial-type flagellum part; PDB: 3AJW_A.
Probab=22.67 E-value=5.1e+02 Score=22.47 Aligned_cols=41 Identities=22% Similarity=0.379 Sum_probs=16.2
Q ss_pred HHHHHHHHHHHHhhhhHHHHHhhHHHHHHHHHHHHHHhhHH
Q 003570 632 VENLKVQQNKLQNSLIEEKLEKDNLAKQVFQLKDELQKKKE 672 (810)
Q Consensus 632 ~e~lk~Q~~~LK~sL~~ee~EKe~l~kQv~qLk~eL~KKe~ 672 (810)
+.....-..-|......-..+-+.+.++|...+..|...--
T Consensus 47 ~~~~~~~~~~l~~~i~~~~~~~~~~~~~~~~~r~~l~~a~~ 87 (123)
T PF02050_consen 47 LRNYQRYISALEQAIQQQQQELERLEQEVEQAREELQEARR 87 (123)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33333333333333333333344444444444444443333
No 320
>PF04201 TPD52: Tumour protein D52 family; InterPro: IPR007327 The hD52 gene was originally identified through its elevated expression level in human breast carcinoma. Cloning of D52 homologues from other species has indicated that D52 may play roles in calcium-mediated signal transduction and cell proliferation. Two human homologues of hD52, hD53 and hD54, have also been identified, demonstrating the existence of a novel gene/protein family []. These proteins have an N-terminal coiled-coil that allows members to form homo- and heterodimers with each other [].
Probab=22.59 E-value=2.3e+02 Score=29.32 Aligned_cols=41 Identities=27% Similarity=0.438 Sum_probs=33.7
Q ss_pred CcchHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHhhhhhhHHHHHH
Q 003570 108 SDGSVEKLKNEIAVMMRQVELSELELLSLRKQVAKESKRAQDQTRQII 155 (810)
Q Consensus 108 sd~~iEkLKsE~~~l~Rq~e~selELQtLRKQi~KESKRgqdLsrEv~ 155 (810)
++++-++||.|++-. +.|++|||-=+.-.=|+..+|-|.+.
T Consensus 27 sEeE~eeLr~EL~Kv-------EeEI~TLrqvL~aKer~~~eLKrkLG 67 (162)
T PF04201_consen 27 SEEEREELRSELAKV-------EEEIQTLRQVLAAKERHCAELKRKLG 67 (162)
T ss_pred CHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHhHHHHHHHHC
Confidence 567888999987754 88999999988888888888888763
No 321
>COG3937 Uncharacterized conserved protein [Function unknown]
Probab=22.35 E-value=4.9e+02 Score=25.49 Aligned_cols=42 Identities=29% Similarity=0.381 Sum_probs=26.3
Q ss_pred HHHHHHHHHHHHHHHHhhhhhhhhHHHHHHHHhhhhhhhhhhhHhhHHHHHHHHHHHHHHHH
Q 003570 302 LEIYIKQLTEDCQVLEQENQCLTSKLEKIQQQESMKSRECIESLATIKELESQSERLEDKIK 363 (810)
Q Consensus 302 Le~~ieQL~~D~E~LkqEN~~ls~kLEq~q~Qeql~~~EcS~~~~~i~eLe~qve~LE~eLk 363 (810)
...+|+.+..|+++.++ +..++ +-.-|..|+-||..|+++++
T Consensus 66 ~~r~i~~ml~~~~~~r~-----------~~~~~---------l~~rvd~Lerqv~~Lenk~k 107 (108)
T COG3937 66 IPRKIEEMLSDLEVARQ-----------SEMDE---------LTERVDALERQVADLENKLK 107 (108)
T ss_pred hhHHHHHHHhhcccccc-----------chHHH---------HHHHHHHHHHHHHHHHHHhc
Confidence 66677888888876665 22111 22456667777777777764
No 322
>KOG4687 consensus Uncharacterized coiled-coil protein [Function unknown]
Probab=22.32 E-value=1.2e+03 Score=26.57 Aligned_cols=179 Identities=23% Similarity=0.293 Sum_probs=104.4
Q ss_pred hhhHHHHhhhhHHHHHHHHHHHHHHHHHHHhhhhhhhhHHHHHHHHhhhhh---hhhhhhHhhHHHHHHHHHHHHHHHHH
Q 003570 288 QGDEIQFFKKHAEDLEIYIKQLTEDCQVLEQENQCLTSKLEKIQQQESMKS---RECIESLATIKELESQSERLEDKIKQ 364 (810)
Q Consensus 288 L~~Eie~ykkerEeLe~~ieQL~~D~E~LkqEN~~ls~kLEq~q~Qeql~~---~EcS~~~~~i~eLe~qve~LE~eLk~ 364 (810)
|..+++-++-+++-|..-.+-|+.-|+.|+.+ +.|. .-++--+++ .|-+++-+.|.+.+.+-..|-..
T Consensus 35 L~QdLEkfe~Ekd~~a~~aETLeln~ealere-~eLl-----aa~gc~a~~e~gterqdLaa~i~etkeeNlkLrTd--- 105 (389)
T KOG4687|consen 35 LGQDLEKFENEKDGLAARAETLELNLEALERE-LELL-----AACGCDAKIEFGTERQDLAADIEETKEENLKLRTD--- 105 (389)
T ss_pred HHHHHHHHHhhhhHHHHHHHHHHHHHHHHHhh-hHHH-----HhcCCCchhhccchhhHHHHHHHHHHHHhHhhhHH---
Confidence 34466666667777777777777777777662 2111 112222233 45566666666665443333222
Q ss_pred HhHHHhHhhHhHHHHHHHHHHHHHHHH---HHHHHHHhhHHHHHhhhHHHHHHHHHHHHHHHHHhhhhhhhHHHHHHHHH
Q 003570 365 QSEEYSESLISINELECQVKELKRELD---KQAQEFEDDIDAVTHAKTEQEQRAIRAEEELRKTRWKNTVTAERLQDEFR 441 (810)
Q Consensus 365 q~~efSesL~tI~eLE~qv~sLeeEl~---~Qaq~fe~Dldam~~~k~EQEqRAi~AEeaLrKtR~~na~taErLQeEf~ 441 (810)
+.+|-.|.-.|+.+++ .-+-.|+...-++-..|.--. .-|---|+-|-+.--.-|.|+.-+.
T Consensus 106 -----------~eaL~dq~adLhgD~elfReTeAq~ese~~a~aseNaarn----eeelqwrrdeanfic~~EgLkak~a 170 (389)
T KOG4687|consen 106 -----------REALLDQKADLHGDCELFRETEAQFESEKMAGASENAARN----EEELQWRRDEANFICAHEGLKAKCA 170 (389)
T ss_pred -----------HHHHHHHHHHHhchHHHHHHHHHHHHHHHhcccccccccc----hHHHHhhHHHHHHHHHHHHHHHHhh
Confidence 2222222333333222 123357777777766553211 1122345666777778899999999
Q ss_pred HHHHHhhhhhhhhHHHHHH--HH------------------------HHHHHHHhhHHHHHHHHHHhHHHHhhhh
Q 003570 442 RLSVDMASKFDENEKLAMK--AM------------------------TEANEQRMQKAHLEEMLQKANDELSLIK 490 (810)
Q Consensus 442 ~LS~qmsSt~eeNEklt~k--A~------------------------~EaseLR~qk~~LEemLqk~neeL~~i~ 490 (810)
-|.+.+-+++++.|-++|. |+ -..+-|=+.|+-|-+.|..+-+|+.+|+
T Consensus 171 ~LafDLkamideKEELimERDa~kcKa~RLnhELfvaLnadkrhpr~~DiDgll~ENkfLhaklkiadeElEliK 245 (389)
T KOG4687|consen 171 GLAFDLKAMIDEKEELIMERDAMKCKAARLNHELFVALNADKRHPRAEDIDGLLAENKFLHAKLKIADEELELIK 245 (389)
T ss_pred hhhhHHHHHhchHHHHHHHHHHHHHHHHHhhhHHHHHHcCCCCCchhhhhHHHHHhhHHHHHHhcccHHHHHHHH
Confidence 9999999999999998874 22 1223344566777788888888888754
No 323
>COG4487 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=22.32 E-value=1.4e+03 Score=27.25 Aligned_cols=129 Identities=22% Similarity=0.258 Sum_probs=73.9
Q ss_pred HhHHHHHHHHHHHHHHH----HHHHHHHHhhHHHHHhhhHHHHHHH-HHHHHHHHHHhhhhhhhHHHHHHHHHHHHHHhh
Q 003570 374 ISINELECQVKELKREL----DKQAQEFEDDIDAVTHAKTEQEQRA-IRAEEELRKTRWKNTVTAERLQDEFRRLSVDMA 448 (810)
Q Consensus 374 ~tI~eLE~qv~sLeeEl----~~Qaq~fe~Dldam~~~k~EQEqRA-i~AEeaLrKtR~~na~taErLQeEf~~LS~qms 448 (810)
+.++.+++++....++. ++|...|+ . .-|++.+ ..+.+.++ ..+...++-|+.++..++.+.+
T Consensus 64 kel~~~~~q~~~~k~~~~~~~~eqi~~~~--------~-~~q~e~~~~~~~~~~N---~e~dke~~~le~~L~~~~~e~~ 131 (438)
T COG4487 64 KELSQLEEQLINQKKEQKNLFNEQIKQFE--------L-ALQDEIAKLEALELLN---LEKDKELELLEKELDELSKELQ 131 (438)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH--------H-HHHHHHHHHHHHHHhh---HHhhHHHHHHHHHHHHHHHHHH
Confidence 47777777777766554 35555555 1 1122222 11212333 4456667777777777777665
Q ss_pred hhhhhhHHHHHHHHHHHHHHHhhHHHHHHH----HHHhHHHHhhhhhhhhccHHHHhHHHhhHHHHHHHHHHhhhhc
Q 003570 449 SKFDENEKLAMKAMTEANEQRMQKAHLEEM----LQKANDELSLIKDQNGVKLQELSDQLEQKDKQIQKMYLELDHS 521 (810)
Q Consensus 449 St~eeNEklt~kA~~EaseLR~qk~~LEem----Lqk~neeL~~i~dq~e~kl~eL~~qld~k~k~ie~m~~Ele~k 521 (810)
-.+ -.-+..-...|.++.-++.+ --+-+..|...+..|+.++++-+.++.++...-.+-++....+
T Consensus 132 ~~l-------q~~~e~~~kkre~~k~~~~l~~~~ekK~e~sLe~eR~k~~~ql~~~~~~~e~~e~~e~~~s~~~~~k 201 (438)
T COG4487 132 KQL-------QNTAEIIEKKRENNKNEERLKFENEKKLEESLELEREKFEEQLHEANLDLEFKENEEQRESKWAILK 201 (438)
T ss_pred HHH-------HHHHHHHHHHHhhhhHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHH
Confidence 433 33333444445555555444 3445555888889999999998877777766555554444433
No 324
>PF02994 Transposase_22: L1 transposable element; InterPro: IPR004244 Many human L1 elements are capable of retrotransposition. Some of these have been shown to exhibit reverse transcriptase (RT) activity [] although the function of many are, as yet, unknown. More information about these proteins can be found at Protein of the Month: Transposase [].; PDB: 2LDY_A 3SOO_A 2YKQ_A 2YKO_C 2YKP_B 2W7A_B 2JRB_A.
Probab=22.18 E-value=2.6e+02 Score=31.43 Aligned_cols=18 Identities=22% Similarity=0.460 Sum_probs=0.5
Q ss_pred HHHHHHHHHHHHHHHHHh
Q 003570 301 DLEIYIKQLTEDCQVLEQ 318 (810)
Q Consensus 301 eLe~~ieQL~~D~E~Lkq 318 (810)
++...|++|..+++.++.
T Consensus 102 el~~~~~elkkEie~IKk 119 (370)
T PF02994_consen 102 ELKKRIKELKKEIENIKK 119 (370)
T ss_dssp ----------------H-
T ss_pred HHHHHHHHHHHHHHHHhh
Confidence 344455555555555554
No 325
>PF14197 Cep57_CLD_2: Centrosome localisation domain of PPC89
Probab=22.10 E-value=4.2e+02 Score=23.57 Aligned_cols=19 Identities=16% Similarity=0.358 Sum_probs=10.2
Q ss_pred hHHHHHHHHHHHHHHHHHH
Q 003570 347 TIKELESQSERLEDKIKQQ 365 (810)
Q Consensus 347 ~i~eLe~qve~LE~eLk~q 365 (810)
.|.+|...++.|..+|+..
T Consensus 48 e~~~Lk~E~e~L~~el~~~ 66 (69)
T PF14197_consen 48 ENNKLKEENEALRKELEEL 66 (69)
T ss_pred HHHHHHHHHHHHHHHHHHh
Confidence 3445555555555555544
No 326
>PF02050 FliJ: Flagellar FliJ protein; InterPro: IPR012823 Many flagellar proteins are exported by a flagellum-specific export pathway. Attempts have been made to characterise the apparatus responsible for this process, by designing assays to screen for mutants with export defects []. Experiments involving filament removal from temperature-sensitive flagellar mutants of Salmonella typhimurium have shown that, while most mutants were able to regrow filaments, flhA, fliH, fliI and fliN mutants showed no or greatly reduced regrowth. This suggests that the corresponding gene products are involved in the process of flagellum-specific export. The sequences of fliH, fliI and the adjacent gene, fliJ, have been deduced. FliJ was shown to encode a protein of molecular mass 17,302 Da []. It is a membrane-associated protein that affects chemotactic events, mutations in FliJ result in failure to respond to chemotactic stimuli.; GO: 0003774 motor activity, 0001539 ciliary or flagellar motility, 0006935 chemotaxis, 0009288 bacterial-type flagellum, 0016020 membrane, 0044461 bacterial-type flagellum part; PDB: 3AJW_A.
Probab=22.03 E-value=5.3e+02 Score=22.39 Aligned_cols=65 Identities=26% Similarity=0.324 Sum_probs=42.7
Q ss_pred hhhhhhHhhHHHHHHHHHHHHHHHHHHhHHHhHhhHhHHHHHH----HHHHHHHHHHHHHHHHHhhHHH
Q 003570 339 RECIESLATIKELESQSERLEDKIKQQSEEYSESLISINELEC----QVKELKRELDKQAQEFEDDIDA 403 (810)
Q Consensus 339 ~EcS~~~~~i~eLe~qve~LE~eLk~q~~efSesL~tI~eLE~----qv~sLeeEl~~Qaq~fe~Dlda 403 (810)
+-++.....|..++..+..++.++......+..+...++.++. .......+...+.+.+-+|+-.
T Consensus 52 ~~~~~l~~~i~~~~~~~~~~~~~~~~~r~~l~~a~~~~k~~e~L~e~~~~~~~~~~~r~Eq~~lDE~a~ 120 (123)
T PF02050_consen 52 RYISALEQAIQQQQQELERLEQEVEQAREELQEARRERKKLEKLKERRREEYQQEEERREQKELDEIAS 120 (123)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTT--
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 5566666777788888888888888888877777776666543 3444555556666666665543
No 327
>PF03194 LUC7: LUC7 N_terminus; InterPro: IPR004882 This family consists of several LUC7 protein homologues that are restricted to eukaryotes. LUC7 has been shown to be a U1 snRNA associated protein [] with a role in splice site recognition []. The entry contains human and mouse LUC7 like (LUC7L) proteins [] and human cisplatin resistance-associated overexpressed protein (CROP) [].
Probab=22.00 E-value=6.8e+02 Score=26.98 Aligned_cols=71 Identities=27% Similarity=0.378 Sum_probs=47.2
Q ss_pred HHHHHHHHHHHHHHhhhhhhhHHH-HHHHHHHHHHHhhhhhhhhHHH--------HHHHHHHHHHHHhhHHHHHHHHHHh
Q 003570 412 EQRAIRAEEELRKTRWKNTVTAER-LQDEFRRLSVDMASKFDENEKL--------AMKAMTEANEQRMQKAHLEEMLQKA 482 (810)
Q Consensus 412 EqRAi~AEeaLrKtR~~na~taEr-LQeEf~~LS~qmsSt~eeNEkl--------t~kA~~EaseLR~qk~~LEemLqk~ 482 (810)
+.|+.+|.+-|..+--..+.++.. -.+.+..|+.++..+..+-|.+ ++.++.+|..|+..+..|+..+..+
T Consensus 96 drrI~~~k~RL~~~~~~~~~~~~~~~~~~i~~l~~~I~~ll~~aE~LGeeG~VdeA~~~~~~~e~Lk~ek~~le~~~~~~ 175 (254)
T PF03194_consen 96 DRRIERAKERLEQTQEEQAKEADEEKAEKIDELDEKIGELLKEAEELGEEGDVDEAQKLMEEVEKLKEEKEELEKELEEY 175 (254)
T ss_pred HHHHHHHHHHHHhCccccccchhhhHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHhhhhhh
Confidence 344555555555544433333322 3667777888888777777766 6778999999999999999954444
No 328
>PF05103 DivIVA: DivIVA protein; InterPro: IPR007793 The Bacillus subtilis divIVA1 mutation causes misplacement of the septum during cell division, resulting in the formation of small, circular, anucleate minicells []. Inactivation of divIVA produces a minicell phenotype, whereas overproduction of DivIVA results in a filamentation phenotype []. These proteins appear to contain coiled-coils.; PDB: 2WUK_C 2WUJ_A.
Probab=21.71 E-value=1.2e+02 Score=28.02 Aligned_cols=93 Identities=22% Similarity=0.321 Sum_probs=0.0
Q ss_pred HHHHHhHHHHHHHHHHHHHHHHHhhhhhhhcccccCCCCCCcccchhhHHHhhhhhhhhhHHHHHHHHHHHHHHHHHHHH
Q 003570 533 AQKHEALSTEIHMLRTEIEKLRKEQYNLSEHGKRRDDNKPKVSTGETDMLIQKWNRERDDLEKKFASAKQEAAKAHEELI 612 (810)
Q Consensus 533 ee~~~a~s~EI~~Lk~eie~L~~e~~~l~e~~~~~d~e~~k~s~~e~~~~lq~~~~er~el~~~~a~~kkeae~~~~EL~ 612 (810)
+.+...+..++..|..++..|..++..|..+. .........|...+..+.+.+......-.
T Consensus 24 D~fl~~l~~~~~~l~~e~~~L~~~~~~l~~~l-------------------~~~~~~~~~l~~~l~~aq~~a~~~~~~A~ 84 (131)
T PF05103_consen 24 DDFLDELAEELERLQRENAELKEEIEELQAQL-------------------EELREEEESLQRALIQAQETADEIKAEAE 84 (131)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHCCCCT-------------------------------------------------
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhh-------------------hhhhhHHHHHHHhhhhhhhhHHHHHHHHH
Q ss_pred h-----hhccCchhHHHHhhHHHHHHHHHHHHHHHHh
Q 003570 613 S-----MRSLKGENEMLIGNLQAEVENLKVQQNKLQN 644 (810)
Q Consensus 613 ~-----m~~~kdEkE~~i~~LqsE~e~lk~Q~~~LK~ 644 (810)
. +.....+-+.++..-..++..+..++..||.
T Consensus 85 ~eA~~i~~~A~~~a~~i~~~A~~~~~~l~~~~~~lk~ 121 (131)
T PF05103_consen 85 EEAEEIIEEAQKEAEEIIEEARAEAERLREEIEELKR 121 (131)
T ss_dssp -------------------------------------
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
No 329
>PF10267 Tmemb_cc2: Predicted transmembrane and coiled-coil 2 protein; InterPro: IPR019394 This family of transmembrane coiled-coil containing proteins is conserved from worms to humans. Its function is unknown.
Probab=21.53 E-value=1.3e+03 Score=26.81 Aligned_cols=54 Identities=22% Similarity=0.284 Sum_probs=30.4
Q ss_pred hhHHHHHHHHHHHHHHHHHHhHHHhHhhHhHHHHHHHHHHHHHHHHHHHHHHHhhHH
Q 003570 346 ATIKELESQSERLEDKIKQQSEEYSESLISINELECQVKELKRELDKQAQEFEDDID 402 (810)
Q Consensus 346 ~~i~eLe~qve~LE~eLk~q~~efSesL~tI~eLE~qv~sLeeEl~~Qaq~fe~Dld 402 (810)
..+.|-.-.+++||..+-...+-|- ..|..|...+-++++-|.=|.-...-||.
T Consensus 251 ~~LqEEr~R~erLEeqlNd~~elHq---~Ei~~LKqeLa~~EEK~~Yqs~eRaRdi~ 304 (395)
T PF10267_consen 251 EALQEERYRYERLEEQLNDLTELHQ---NEIYNLKQELASMEEKMAYQSYERARDIW 304 (395)
T ss_pred HHHHHhHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHhHHHHHHHHHHHHHhHHH
Confidence 3344445556666666555554442 34555666666666666666666666655
No 330
>PF06785 UPF0242: Uncharacterised protein family (UPF0242); InterPro: IPR009623 This is a group of proteins of unknown function.
Probab=21.32 E-value=1.3e+03 Score=26.78 Aligned_cols=130 Identities=16% Similarity=0.193 Sum_probs=0.0
Q ss_pred hhHHHHHHHHHhhhHHHHhhhhHHHHHHHHHHHHHHHHHHHhhhhhhhhHHHHHHHHhhhhhhhhhhhHhhHHHHHHHHH
Q 003570 277 EVDMLKQKIRDQGDEIQFFKKHAEDLEIYIKQLTEDCQVLEQENQCLTSKLEKIQQQESMKSRECIESLATIKELESQSE 356 (810)
Q Consensus 277 E~~~LkqKI~DL~~Eie~ykkerEeLe~~ieQL~~D~E~LkqEN~~ls~kLEq~q~Qeql~~~EcS~~~~~i~eLe~qve 356 (810)
...+|..||..+-.-.+-.|+=+|.++..-.+..+ -+.|.|-+.++---....+..-+++.+
T Consensus 69 a~~llq~kirk~~e~~eglr~i~es~~e~q~e~~q------------------L~~qnqkL~nqL~~~~~vf~k~k~~~q 130 (401)
T PF06785_consen 69 AGQLLQTKIRKITEKDEGLRKIRESVEERQQESEQ------------------LQSQNQKLKNQLFHVREVFMKTKGDIQ 130 (401)
T ss_pred HHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHH------------------HHHhHHHHHHHHHHHHHHHHHhcchHH
Q ss_pred HHHHHHHHHhHHHhHhhHhHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHhhhHHHHHHHHHHHHHHHH
Q 003570 357 RLEDKIKQQSEEYSESLISINELECQVKELKRELDKQAQEFEDDIDAVTHAKTEQEQRAIRAEEELRK 424 (810)
Q Consensus 357 ~LE~eLk~q~~efSesL~tI~eLE~qv~sLeeEl~~Qaq~fe~Dldam~~~k~EQEqRAi~AEeaLrK 424 (810)
+||.=+.....++--.=..+.++..+....+++-.+=-+.+.+-+...+-.+.|+-.--+.-+.+|++
T Consensus 131 ~LE~li~~~~EEn~~lqlqL~~l~~e~~Ekeeesq~LnrELaE~layqq~L~~eyQatf~eq~~ml~k 198 (401)
T PF06785_consen 131 HLEGLIRHLREENQCLQLQLDALQQECGEKEEESQTLNRELAEALAYQQELNDEYQATFVEQHSMLDK 198 (401)
T ss_pred HHHHHHHHHHHHHHHHHHhHHHHHHHHhHhHHHHHHHHHHHHHHHHHHHHHHHHhhcccccchhhhHH
No 331
>PF04508 Pox_A_type_inc: Viral A-type inclusion protein repeat ; InterPro: IPR007596 The repeat is found in the A-type inclusion protein of the Poxvirus family [].; GO: 0016032 viral reproduction
Probab=21.28 E-value=99 Score=22.85 Aligned_cols=21 Identities=19% Similarity=0.430 Sum_probs=17.4
Q ss_pred hhHHHHHHHHHhhhHHHHhhh
Q 003570 277 EVDMLKQKIRDQGDEIQFFKK 297 (810)
Q Consensus 277 E~~~LkqKI~DL~~Eie~ykk 297 (810)
|+..|+.+|.||-.++..|++
T Consensus 2 E~~rlr~rI~dLer~L~~C~~ 22 (23)
T PF04508_consen 2 EMNRLRNRISDLERQLSECRR 22 (23)
T ss_pred hHHHHHHHHHHHHHHHHHHhc
Confidence 678899999999888887764
No 332
>PF14282 FlxA: FlxA-like protein
Probab=21.18 E-value=5.3e+02 Score=24.24 Aligned_cols=59 Identities=32% Similarity=0.354 Sum_probs=33.6
Q ss_pred hHHHHHHHHHHHHHHHHHHHhhhhhhhhHHHHHHHHhhhhhhhhhhhHhhHHHHHHHHHHHHHHHHHHh
Q 003570 298 HAEDLEIYIKQLTEDCQVLEQENQCLTSKLEKIQQQESMKSRECIESLATIKELESQSERLEDKIKQQS 366 (810)
Q Consensus 298 erEeLe~~ieQL~~D~E~LkqEN~~ls~kLEq~q~Qeql~~~EcS~~~~~i~eLe~qve~LE~eLk~q~ 366 (810)
..+.|..+|..|......|... .++...-.+.+.+. ++.-|..|++||..|..+..++.
T Consensus 20 ~I~~L~~Qi~~Lq~ql~~l~~~-~~~~~e~k~~q~q~---------Lq~QI~~LqaQI~qlq~q~~~~~ 78 (106)
T PF14282_consen 20 QIEQLQKQIKQLQEQLQELSQD-SDLDAEQKQQQIQL---------LQAQIQQLQAQIAQLQSQQAEQQ 78 (106)
T ss_pred HHHHHHHHHHHHHHHHHHHHcc-cCCCHHHHHHHHHH---------HHHHHHHHHHHHHHHHHHHHHHH
Confidence 5566777777777777666662 22222222323222 45667777777777776665554
No 333
>KOG1853 consensus LIS1-interacting protein NUDE [Cytoskeleton]
Probab=21.17 E-value=1.2e+03 Score=26.23 Aligned_cols=159 Identities=19% Similarity=0.258 Sum_probs=97.4
Q ss_pred HHHHHHHHHHHHHHHHHhhhhhhhHHHHHHHHHHHHHHhhhhhhhhHHHHHHHHHHHHHHHhhHHHHHHHHHHhHHHHhh
Q 003570 409 TEQEQRAIRAEEELRKTRWKNTVTAERLQDEFRRLSVDMASKFDENEKLAMKAMTEANEQRMQKAHLEEMLQKANDELSL 488 (810)
Q Consensus 409 ~EQEqRAi~AEeaLrKtR~~na~taErLQeEf~~LS~qmsSt~eeNEklt~kA~~EaseLR~qk~~LEemLqk~neeL~~ 488 (810)
.++.+++.++.+-|+. +|+=-+-+-..|-+-.+--|.--.++.++...|+...-.+-+.+..-.-+--
T Consensus 23 ~~ykq~f~~~reEl~E-----------FQegSrE~EaelesqL~q~etrnrdl~t~nqrl~~E~e~~Kek~e~q~~q~y- 90 (333)
T KOG1853|consen 23 HEYKQHFLQMREELNE-----------FQEGSREIEAELESQLDQLETRNRDLETRNQRLTTEQERNKEKQEDQRVQFY- 90 (333)
T ss_pred HHHHHHHHHHHHHHHH-----------HhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-
Confidence 4555666666555542 4444455666666777777777777777777777665544444433322221
Q ss_pred hhhhhhccHHHHhHHHhhHHHHHHHHHHhhhhchhhhhHHhhhHHHHHHhHHHHHHHHHHHHHHHHHhhhhhhhcccccC
Q 003570 489 IKDQNGVKLQELSDQLEQKDKQIQKMYLELDHSSSQLIDEHKSEAQKHEALSTEIHMLRTEIEKLRKEQYNLSEHGKRRD 568 (810)
Q Consensus 489 i~dq~e~kl~eL~~qld~k~k~ie~m~~Ele~kS~qle~~kk~~ee~~~a~s~EI~~Lk~eie~L~~e~~~l~e~~~~~d 568 (810)
+-++.|++=.-|+-.-..++..-.-||+..-+.|+-.+|...--.++|-.- |.--|+
T Consensus 91 ---~q~s~Leddlsqt~aikeql~kyiReLEQaNDdLErakRati~sleDfeqr---LnqAIE----------------- 147 (333)
T KOG1853|consen 91 ---QQESQLEDDLSQTHAIKEQLRKYIRELEQANDDLERAKRATIYSLEDFEQR---LNQAIE----------------- 147 (333)
T ss_pred ---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccHHHHhhhhhhhhHHHHHHH---HHHHHH-----------------
Confidence 123344444555555566677778889999999999999888878887653 333343
Q ss_pred CCCCCcccchhhHHHhhhhhhhhhHHHHHHHHHHHHHHHHHHHH
Q 003570 569 DNKPKVSTGETDMLIQKWNRERDDLEKKFASAKQEAAKAHEELI 612 (810)
Q Consensus 569 ~e~~k~s~~e~~~~lq~~~~er~el~~~~a~~kkeae~~~~EL~ 612 (810)
..++|.-.--|+.-|-..+--||+||....+||.
T Consensus 148 ----------rnAfLESELdEke~llesvqRLkdEardlrqela 181 (333)
T KOG1853|consen 148 ----------RNAFLESELDEKEVLLESVQRLKDEARDLRQELA 181 (333)
T ss_pred ----------HHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 2334444444555566666777888777777764
No 334
>PF06657 Cep57_MT_bd: Centrosome microtubule-binding domain of Cep57; InterPro: IPR010597 This entry is thought to represent a centrosomal protein of 57 kDa (Cep57-related protein). It is required for spindle microtubule attachment to both kinetochores and centrosomes and functions to tether minus-ends of spindle microtubules to centrosomes. It may act by forming ring-like structures around microtubules, or by serving as a cross-linker or scaffold at the attachment site [].
Probab=21.05 E-value=2.6e+02 Score=25.35 Aligned_cols=57 Identities=18% Similarity=0.333 Sum_probs=33.9
Q ss_pred HHHHHHHHhHHHHhhhhhhhhccHHHHhHHHhh---------HHHHHHHHHHhhhhchhhhhHHhhh
Q 003570 474 HLEEMLQKANDELSLIKDQNGVKLQELSDQLEQ---------KDKQIQKMYLELDHSSSQLIDEHKS 531 (810)
Q Consensus 474 ~LEemLqk~neeL~~i~dq~e~kl~eL~~qld~---------k~k~ie~m~~Ele~kS~qle~~kk~ 531 (810)
-|..-|....+|+.+.+-+|. .|++-.+++|- -...|+.++-.++.|++|+-.+.+|
T Consensus 14 ~Ls~vl~~LqDE~~hm~~e~~-~L~~~~~~~d~s~~~~~R~~L~~~l~~lv~~mE~K~dQI~~L~dv 79 (79)
T PF06657_consen 14 ALSEVLKALQDEFGHMKMEHQ-ELQDEYKQMDPSLGRRKRRDLEQELEELVKRMEAKADQIYKLYDV 79 (79)
T ss_pred HHHHHHHHHHHHHHHHHHHHH-HHHHHHHhcccccChHHHHHHHHHHHHHHHHHHHHHHHHHHHhcC
Confidence 355667777777777666554 22222344332 3456777777777777777665543
No 335
>PF09744 Jnk-SapK_ap_N: JNK_SAPK-associated protein-1; InterPro: IPR019143 This entry represents the N-terminal 200 residues of a set of proteins conserved from yeasts to humans. Most of the proteins in this entry have a RhoGEF domain (IPR000219 from INTERPRO) at their C-terminal end.
Probab=20.88 E-value=9e+02 Score=24.65 Aligned_cols=97 Identities=18% Similarity=0.171 Sum_probs=45.2
Q ss_pred HHHHhhccCchhhHHHHHHHHHhhhHHHHhhhhHH-------HHHHHHHHHHHHHHHHHhhhhhhhhHHHHHHHHhhhhh
Q 003570 266 EALAKERNKDKEVDMLKQKIRDQGDEIQFFKKHAE-------DLEIYIKQLTEDCQVLEQENQCLTSKLEKIQQQESMKS 338 (810)
Q Consensus 266 e~Lvke~~~~~E~~~LkqKI~DL~~Eie~ykkerE-------eLe~~ieQL~~D~E~LkqEN~~ls~kLEq~q~Qeql~~ 338 (810)
+.++..+.. +.+..|=-||.-..-.+|.+...+. .|....++|...|+.-++.....-.++.+.+ =.+
T Consensus 13 E~lId~~G~-e~v~~LmP~VV~vLE~Le~~~~~n~~~~~e~~~L~~d~e~L~~q~~~ek~~r~~~e~~l~~~E----d~~ 87 (158)
T PF09744_consen 13 ERLIDRYGE-EAVKGLMPKVVRVLELLESLASRNQEHEVELELLREDNEQLETQYEREKELRKQAEEELLELE----DQW 87 (158)
T ss_pred HHHHHHhCh-hHHHHHHHHHHHHHHHHHHHHHhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----HHH
Confidence 334444422 2444444555555444444443333 4444444444444443332222222222110 123
Q ss_pred -hhhhhhHhhHHHHHHHHHHHHHHHHHHhH
Q 003570 339 -RECIESLATIKELESQSERLEDKIKQQSE 367 (810)
Q Consensus 339 -~EcS~~~~~i~eLe~qve~LE~eLk~q~~ 367 (810)
.||-.+...|..|++++.+|+.++++.+.
T Consensus 88 ~~e~k~L~~~v~~Le~e~r~L~~~~~~~~~ 117 (158)
T PF09744_consen 88 RQERKDLQSQVEQLEEENRQLELKLKNLSD 117 (158)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhhhhh
Confidence 56666666666677777777666665443
No 336
>KOG1937 consensus Uncharacterized conserved protein [Function unknown]
Probab=20.47 E-value=1.5e+03 Score=27.20 Aligned_cols=124 Identities=23% Similarity=0.343 Sum_probs=73.8
Q ss_pred Hhhhhhhcchhhhhhhhhhhh--hhHHHHHHHHHHHHHHHHhhhhhhhhhhhhhhhhh-hhhhHHHH-------HHHH--
Q 003570 202 ELNYEKEVSAHLRLQLEKTQD--SNAELILAVKDLNEMLEQKNMEISSLSSKLEESKL-VREDQLAL-------EALA-- 269 (810)
Q Consensus 202 EL~yEKelNaNL~LQLqKTQE--SNsELilAVqDLeeMLEqKn~EIs~ls~~~~e~~~-~~edq~al-------e~Lv-- 269 (810)
|+.---+++.||+--|++.=. +--.++--..++..|+-++..+|..++..+.+.+- .+..+-+| +++|
T Consensus 360 ei~~~eel~~~Lrsele~lp~dv~rk~ytqrikEi~gniRKq~~DI~Kil~etreLqkq~ns~se~L~Rsfavtdellf~ 439 (521)
T KOG1937|consen 360 EIESNEELAEKLRSELEKLPDDVQRKVYTQRIKEIDGNIRKQEQDIVKILEETRELQKQENSESEALNRSFAVTDELLFM 439 (521)
T ss_pred HHHhhHHHHHHHHHHHhcCCchhHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHH
Confidence 333445788888888877655 34566667789999999999999987776665432 11111111 1111
Q ss_pred ----------------hhccC-------chhhHHHHHHHHHhhhHHHHhhhhHHHHHHHHHHHHHHHHHHHhhhhhhhhH
Q 003570 270 ----------------KERNK-------DKEVDMLKQKIRDQGDEIQFFKKHAEDLEIYIKQLTEDCQVLEQENQCLTSK 326 (810)
Q Consensus 270 ----------------ke~~~-------~~E~~~LkqKI~DL~~Eie~ykkerEeLe~~ieQL~~D~E~LkqEN~~ls~k 326 (810)
.-|.. -.+++.++.-+.||-..|+. +..-.--+.+++|..||..++++|..|...
T Consensus 440 sakhddhvR~aykllt~iH~nc~ei~E~i~~tg~~~revrdlE~qI~~--E~~k~~l~slEkl~~Dyqairqen~~L~~~ 517 (521)
T KOG1937|consen 440 SAKHDDHVRLAYKLLTRIHLNCMEILEMIRETGALKREVRDLESQIYV--EEQKQYLKSLEKLHQDYQAIRQENDQLFSE 517 (521)
T ss_pred HhccCHHHHHHHHHHHHHHHHHHHHHHHHHHcchHHHHHHHHHHHHhH--HHHHHHHhhHHHHHHHHHHHHHHHHHHHHH
Confidence 11111 12445555555555444442 222223356788999999999999888754
Q ss_pred H
Q 003570 327 L 327 (810)
Q Consensus 327 L 327 (810)
+
T Consensus 518 i 518 (521)
T KOG1937|consen 518 I 518 (521)
T ss_pred H
Confidence 3
No 337
>TIGR02338 gimC_beta prefoldin, beta subunit, archaeal. Chaperonins are cytosolic, ATP-dependent molecular chaperones, with a conserved toroidal architecture, that assist in the folding of nascent and/or denatured polypeptide chains. The group I chaperonin system consists of GroEL and GroES, and is found (usually) in bacteria and organelles of bacterial origin. The group II chaperonin system, called the thermosome in Archaea and TRiC or CCT in the Eukaryota, is structurally similar but only distantly related. Prefoldin, also called GimC, is a complex in Archaea and Eukaryota, that works with group II chaperonins. Members of this protein family are the archaeal clade of the beta class of prefoldin subunit. Closely related, but outside the scope of this family are the eukaryotic beta-class prefoldin subunits, Gim-1,3,4 and 6. The alpha class prefoldin subunits are more distantly related.
Probab=20.47 E-value=7e+02 Score=23.23 Aligned_cols=44 Identities=23% Similarity=0.336 Sum_probs=31.8
Q ss_pred ccCchhhHHHHHHHHHhhhHHHHhhhhHHHHHHHHHHHHHHHHH
Q 003570 272 RNKDKEVDMLKQKIRDQGDEIQFFKKHAEDLEIYIKQLTEDCQV 315 (810)
Q Consensus 272 ~~~~~E~~~LkqKI~DL~~Eie~ykkerEeLe~~ieQL~~D~E~ 315 (810)
.+.++.+..|+.+|..+...|..+.+..+.|..+|..+......
T Consensus 63 ~~~~e~~~~l~~r~e~ie~~i~~lek~~~~l~~~l~e~q~~l~~ 106 (110)
T TIGR02338 63 TDKEEAIQELKEKKETLELRVKTLQRQEERLREQLKELQEKIQE 106 (110)
T ss_pred ecHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33456677888888888878887777777777777777665443
No 338
>KOG4001 consensus Axonemal dynein light chain [Cytoskeleton]
Probab=20.39 E-value=4.3e+02 Score=28.66 Aligned_cols=60 Identities=25% Similarity=0.208 Sum_probs=33.1
Q ss_pred hHHHHhhhhHHHHHHHHHHHHHHHHHHHhhhhhhhhHHHHHHHHhhhhh-hhhhhhHhhHHHHHHHHH
Q 003570 290 DEIQFFKKHAEDLEIYIKQLTEDCQVLEQENQCLTSKLEKIQQQESMKS-RECIESLATIKELESQSE 356 (810)
Q Consensus 290 ~Eie~ykkerEeLe~~ieQL~~D~E~LkqEN~~ls~kLEq~q~Qeql~~-~EcS~~~~~i~eLe~qve 356 (810)
.++....-++.+|+.+|.||...|+--+.-|...-.-.|+ +| .|---+..|...|++|++
T Consensus 192 ~~~k~le~~k~~Le~~ia~~k~K~e~~e~r~~E~r~ieEk-------k~~eei~fLk~tN~qLKaQLe 252 (259)
T KOG4001|consen 192 TEWKVLEDKKKELELKIAQLKKKLETDEIRSEEEREIEEK-------KMKEEIEFLKETNRQLKAQLE 252 (259)
T ss_pred HHHHHHhhhHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHh
Confidence 3444445567778888888877766655544433322222 45 444444455555665554
No 339
>PRK13729 conjugal transfer pilus assembly protein TraB; Provisional
Probab=20.31 E-value=1.8e+02 Score=34.33 Aligned_cols=48 Identities=15% Similarity=0.288 Sum_probs=27.5
Q ss_pred hhhhhhhhHHHHHHHHHHHHHHHHHHHHhhhccCchhHHHHhhHHHHHHHHHHHH
Q 003570 585 KWNRERDDLEKKFASAKQEAAKAHEELISMRSLKGENEMLIGNLQAEVENLKVQQ 639 (810)
Q Consensus 585 ~~~~er~el~~~~a~~kkeae~~~~EL~~m~~~kdEkE~~i~~LqsE~e~lk~Q~ 639 (810)
.......+|+++|+.++.|.+ .|.....+-+..|..|.+|+..|+.|.
T Consensus 73 eqQ~kasELEKqLaaLrqElq-------~~saq~~dle~KIkeLEaE~~~Lk~Ql 120 (475)
T PRK13729 73 EMQVTAAQMQKQYEEIRRELD-------VLNKQRGDDQRRIEKLGQDNAALAEQV 120 (475)
T ss_pred HHHHHHHHHHHHHHHHHHHHH-------HHhhhhhhHHHHHHHHHHHHHHHHHHH
Confidence 334456677777777754443 222223333566667777777666665
No 340
>TIGR01843 type_I_hlyD type I secretion membrane fusion protein, HlyD family. Type I secretion is an ABC transport process that exports proteins, without cleavage of any signal sequence, from the cytosol to extracellular medium across both inner and outer membranes. The secretion signal is found in the C-terminus of the transported protein. This model represents the adaptor protein between the ATP-binding cassette (ABC) protein of the inner membrane and the outer membrane protein, and is called the membrane fusion protein. This model selects a subfamily closely related to HlyD; it is defined narrowly and excludes, for example, colicin V secretion protein CvaA and multidrug efflux proteins.
Probab=20.22 E-value=1.1e+03 Score=25.43 Aligned_cols=21 Identities=19% Similarity=0.292 Sum_probs=11.1
Q ss_pred HHhHHHHHHHHHHHHHHHHHh
Q 003570 536 HEALSTEIHMLRTEIEKLRKE 556 (810)
Q Consensus 536 ~~a~s~EI~~Lk~eie~L~~e 556 (810)
......++..+++.+..+...
T Consensus 248 l~~~~~~l~~~~~~l~~~~~~ 268 (423)
T TIGR01843 248 LTEAQARLAELRERLNKARDR 268 (423)
T ss_pred HHHHHHHHHHHHHHHHHHHHH
Confidence 344555555555555555443
No 341
>PF04977 DivIC: Septum formation initiator; InterPro: IPR007060 DivIC, from the spore-forming, Gram-positive bacterium Bacillus subtilis, is necessary for both vegetative and sporulation septum formation []. These proteins are mainly composed of an N-terminal coiled-coil. DivIB, DivIC and FtsL inter-depend on each other for stabilisation and localisation. The latter two form a heterodimer. DivIC is always centre cell but the other two associate with it during septation [].; GO: 0007049 cell cycle
Probab=20.18 E-value=2.9e+02 Score=23.25 Aligned_cols=26 Identities=27% Similarity=0.438 Sum_probs=20.5
Q ss_pred hhHHHHHHhhHHhhhHHHHHHHHhhh
Q 003570 148 QDQTRQIISLSSERDALTIECEQLRK 173 (810)
Q Consensus 148 qdLsrEv~~lk~ERD~Lk~EcEqLks 173 (810)
++|..++..++.+.+.|+.+++.|+.
T Consensus 27 ~~l~~~i~~l~~e~~~L~~ei~~l~~ 52 (80)
T PF04977_consen 27 AELQKEIEELKKENEELKEEIERLKN 52 (80)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhcC
Confidence 46777888888888888888888844
No 342
>TIGR01837 PHA_granule_1 poly(hydroxyalkanoate) granule-associated protein. This model describes a domain found in some proteins associated with polyhydroxyalkanoate (PHA) granules in a subset of species that have PHA inclusion granules. Included are two tandem proteins of Pseudomonas oleovorans, PhaI and PhaF, and their homologs in related species. PhaF proteins have a low-complexity C-terminal region with repeats similar to AAAKP.
Probab=20.17 E-value=6.2e+02 Score=24.28 Aligned_cols=20 Identities=35% Similarity=0.434 Sum_probs=11.7
Q ss_pred HHHHHHHHHHHHHHHhhhhh
Q 003570 541 TEIHMLRTEIEKLRKEQYNL 560 (810)
Q Consensus 541 ~EI~~Lk~eie~L~~e~~~l 560 (810)
.+|+.|+.+|..|....+.|
T Consensus 96 ~ev~~L~~RI~~Le~~l~~l 115 (118)
T TIGR01837 96 EEIEALSAKIEQLAVQVEEL 115 (118)
T ss_pred HHHHHHHHHHHHHHHHHHHH
Confidence 46666666666666555443
No 343
>PF00170 bZIP_1: bZIP transcription factor cAMP response element binding (CREB) protein signature fos transforming protein signature jun transcription factor signature; InterPro: IPR011616 The basic-leucine zipper (bZIP) transcription factors [, ] of eukaryotic are proteins that contain a basic region mediating sequence-specific DNA-binding followed by a leucine zipper region (see IPR002158 from INTERPRO) required for dimerization.; GO: 0003700 sequence-specific DNA binding transcription factor activity, 0043565 sequence-specific DNA binding, 0046983 protein dimerization activity, 0006355 regulation of transcription, DNA-dependent; PDB: 2H7H_B 2OQQ_B 1S9K_E 1JNM_A 1JUN_A 1FOS_H 1A02_J 1T2K_C 1CI6_A 1DH3_C ....
Probab=20.02 E-value=3.9e+02 Score=22.49 Aligned_cols=36 Identities=28% Similarity=0.405 Sum_probs=17.6
Q ss_pred HHHHHHHHHHHHhHHHhHhhHhHHHHHHHHHHHHHH
Q 003570 354 QSERLEDKIKQQSEEYSESLISINELECQVKELKRE 389 (810)
Q Consensus 354 qve~LE~eLk~q~~efSesL~tI~eLE~qv~sLeeE 389 (810)
++..||.++..+..++..-...|..|...+..|..+
T Consensus 27 ~~~~Le~~~~~L~~en~~L~~~~~~L~~~~~~L~~e 62 (64)
T PF00170_consen 27 YIEELEEKVEELESENEELKKELEQLKKEIQSLKSE 62 (64)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 333444444444444444444555666666655544
Done!