Query 003570
Match_columns 810
No_of_seqs 47 out of 49
Neff 3.0
Searched_HMMs 13730
Date Tue Mar 26 18:02:54 2013
Command hhsearch -i /local_scratch/syshi/lefta3m/003570.a3m -d /local_scratch/syshi/scop70.hhm -v 0 -o /local_scratch/syshi/H1_1619-1623//hhsearch_scop/003570hhsearch_scop
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 d1ez3a_ a.47.2.1 (A:) Syntaxin 29.2 8.5 0.00062 12.0 8.0 101 533-648 2-104 (124)
2 d1ntca_ a.4.1.12 (A:) DNA-bind 4.2 87 0.0063 4.3 2.4 28 408-437 48-75 (91)
3 d1umqa_ a.4.1.12 (A:) Photosyn 3.7 1E+02 0.0074 3.8 2.9 26 410-437 19-44 (60)
4 d1tbge_ a.137.3.1 (E:) Transdu 3.2 1.2E+02 0.0089 3.2 1.8 20 649-668 8-27 (68)
5 d1etxa_ a.4.1.12 (A:) FIS prot 3.0 1.3E+02 0.0096 2.9 4.5 27 409-437 47-73 (89)
6 d1sf9a_ b.34.15.1 (A:) Hypothe 2.9 1.4E+02 0.01 2.8 2.2 34 634-669 7-40 (118)
7 d2f9ya1 c.14.1.4 (A:4-319) Ace 2.8 43 0.0031 6.6 -2.6 46 512-557 6-51 (316)
8 d1slqa_ f.47.1.1 (A:) VP4 memb 2.3 1.8E+02 0.013 1.8 3.0 21 148-168 240-260 (270)
9 d1hf2a2 c.102.1.1 (A:1-99) Cel 1.9 1.5E+02 0.011 2.4 -0.9 60 491-559 16-75 (99)
10 d1oqya1 a.5.2.1 (A:160-200) DN 1.7 2.7E+02 0.02 0.5 0.7 20 417-436 20-39 (41)
No 1
>d1ez3a_ a.47.2.1 (A:) Syntaxin 1A N-terminal domain {Rat (Rattus norvegicus) [TaxId: 10116]}
Probab=29.24 E-value=8.5 Score=12.01 Aligned_cols=101 Identities=17% Similarity=0.261 Sum_probs=54.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCHHHHHHHHH--HHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf 998786799999999999998775310100024567899876531135777544--443435788898789999999999
Q 003570 533 AQKHEALSTEIHMLRTEIEKLRKEQYNLSEHGKRRDDNKPKVSTGETDMLIQKW--NRERDDLEKKFASAKQEAAKAHEE 610 (810)
Q Consensus 533 ee~~~a~s~EI~~Lk~eie~L~~e~~~l~e~~~~~d~e~~k~s~~e~~~~lq~~--~~er~el~~~~a~~kkeae~~~~E 610 (810)
+....+|..+|+-.+..|..+......+..+. ..++..-. ..-+..|+..++..++-|.....-
T Consensus 2 d~~m~~Ff~eV~~Ir~~I~~i~~~v~~i~~~~--------------~~~l~~~~~~~~~~~~l~~~~~~i~~~a~~ik~~ 67 (124)
T d1ez3a_ 2 DRFMDEFFEQVEEIRGFIDKIAENVEEVKRKH--------------SAILASPNPDEKTKEELEELMSDIKKTANKVRSK 67 (124)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--------------HHHHHCSSCCHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--------------HHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHHH
T ss_conf 51689999999999999999999999999999--------------9987579865667999999999999999999999
Q ss_pred HHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf 97520267324888753799999999989988855649
Q 003570 611 LISMRSLKGENEMLIGNLQAEVENLKVQQNKLQNSLIE 648 (810)
Q Consensus 611 L~~m~~~kdEkE~~i~~LqsEve~lk~Q~~~LK~sL~~ 648 (810)
|-.|...... ...-+.-.++..+-+.||+-|++.|.+
T Consensus 68 Lk~l~~~~~~-~~~~~~~s~~~Rir~~q~~~L~~kf~e 104 (124)
T d1ez3a_ 68 LKSIEQSIEQ-EEGLNRSSADLRIRKTQHSTLSRKFVE 104 (124)
T ss_dssp HHHHHHHHHH-HHTTSCCCHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHH-HHCCCCCCHHHHHHHHHHHHHHHHHHH
T ss_conf 9999987886-112489979999999999999999999
No 2
>d1ntca_ a.4.1.12 (A:) DNA-binding domain of NTRC {Salmonella typhimurium [TaxId: 90371]}
Probab=4.23 E-value=87 Score=4.29 Aligned_cols=28 Identities=25% Similarity=0.281 Sum_probs=22.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf 179999978999999997433433479999
Q 003570 408 KTEQEQRAIRAEEELRKTRWKNTVTAERLQ 437 (810)
Q Consensus 408 k~EQEqRAi~AEeaLrKtR~~na~taErLQ 437 (810)
-.+.|+..|++ +|.++.||.+-+|+.|.
T Consensus 48 ~~~~E~~lI~~--aL~~~~Gn~~~AA~~LG 75 (91)
T d1ntca_ 48 QPELERTLLTT--ALRHTQGHKQEAARLLG 75 (91)
T ss_dssp HHHHHHHHHHH--HHHHTTTCTTHHHHHTT
T ss_pred HHHHHHHHHHH--HHHHHCCCHHHHHHHHC
T ss_conf 99999999999--99995995999999979
No 3
>d1umqa_ a.4.1.12 (A:) Photosynthetic apparatus regulatory protein PprA (RegA), DNA-binding domain {Rhodobacter sphaeroides [TaxId: 1063]}
Probab=3.73 E-value=1e+02 Score=3.77 Aligned_cols=26 Identities=19% Similarity=0.104 Sum_probs=20.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf 9999978999999997433433479999
Q 003570 410 EQEQRAIRAEEELRKTRWKNTVTAERLQ 437 (810)
Q Consensus 410 EQEqRAi~AEeaLrKtR~~na~taErLQ 437 (810)
+.|+..|.. +|..+.||.+-+|..|-
T Consensus 19 ~~Er~~I~~--aL~~~~gn~~~aA~~LG 44 (60)
T d1umqa_ 19 RVRWEHIQR--IYEMCDRNVSETARRLN 44 (60)
T ss_dssp HHHHHHHHH--HHHHTTSCHHHHHHHHT
T ss_pred HHHHHHHHH--HHHHHCCCHHHHHHHHC
T ss_conf 999999999--99996685999999989
No 4
>d1tbge_ a.137.3.1 (E:) Transducin (heterotrimeric G protein), gamma chain {Cow (Bos taurus) [TaxId: 9913]}
Probab=3.21 E-value=1.2e+02 Score=3.16 Aligned_cols=20 Identities=45% Similarity=0.504 Sum_probs=12.7
Q ss_pred HHHHHHHHHHHHHHHHHHHH
Q ss_conf 78776688999999779987
Q 003570 649 EKLEKDNLAKQVFQLKDELQ 668 (810)
Q Consensus 649 ee~EKe~l~kQv~qLk~eL~ 668 (810)
+-++++.|++.|=|||.|+.
T Consensus 8 dmsd~~~lk~~VeQLr~Ea~ 27 (68)
T d1tbge_ 8 DLTEKDKLKMEVDQLKKEVT 27 (68)
T ss_dssp CCCTTHHHHHHHHHHHHHHT
T ss_pred CCCHHHHHHHHHHHHHHHHC
T ss_conf 02509999999999999966
No 5
>d1etxa_ a.4.1.12 (A:) FIS protein {Escherichia coli [TaxId: 562]}
Probab=3.01 E-value=1.3e+02 Score=2.90 Aligned_cols=27 Identities=26% Similarity=0.169 Sum_probs=23.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf 79999978999999997433433479999
Q 003570 409 TEQEQRAIRAEEELRKTRWKNTVTAERLQ 437 (810)
Q Consensus 409 ~EQEqRAi~AEeaLrKtR~~na~taErLQ 437 (810)
.+.|++.|.. +|.++.||.+-+|..|-
T Consensus 47 ~e~E~~~i~~--aL~~~~gn~~~aA~~LG 73 (89)
T d1etxa_ 47 AEVEQPLLDM--VMQYTRGNATRAALMMG 73 (89)
T ss_dssp HHHHHHHHHH--HHHHTTTCHHHHHHHHT
T ss_pred HHHHHHHHHH--HHHHCCCCHHHHHHHHC
T ss_conf 9999999999--99992996999999989
No 6
>d1sf9a_ b.34.15.1 (A:) Hypothetical protein YfhH {Bacillus subtilis [TaxId: 1423]}
Probab=2.91 E-value=1.4e+02 Score=2.76 Aligned_cols=34 Identities=21% Similarity=0.359 Sum_probs=13.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf 999989988855649787766889999997799875
Q 003570 634 NLKVQQNKLQNSLIEEKLEKDNLAKQVFQLKDELQK 669 (810)
Q Consensus 634 ~lk~Q~~~LK~sL~~ee~EKe~l~kQv~qLk~eL~K 669 (810)
+|-.|.|.+...+| ++-+..|+.-|-.|+-.-+|
T Consensus 7 ~~~~~~~~m~kryS--eMs~~EL~~EIa~L~EKaRK 40 (118)
T d1sf9a_ 7 NLYFQSNAMEKRYS--QMTPHELNTEIALLSEKARK 40 (118)
T ss_dssp HHHHHHHHHHHHHH--TCCHHHHHHHHHHHHHHHHH
T ss_pred CEEEECCHHHHHHH--HCCHHHHHHHHHHHHHHHHH
T ss_conf 11331225567777--66999999999999999999
No 7
>d2f9ya1 c.14.1.4 (A:4-319) Acetyl-coenzyme A carboxylase carboxyl transferase subunit alpha, AccA {Escherichia coli [TaxId: 562]}
Probab=2.83 E-value=43 Score=6.61 Aligned_cols=46 Identities=17% Similarity=0.286 Sum_probs=24.4
Q ss_pred HHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf 9999963110133467763099987867999999999999987753
Q 003570 512 QKMYLELDHSSSQLIDEHKSEAQKHEALSTEIHMLRTEIEKLRKEQ 557 (810)
Q Consensus 512 e~m~~Ele~kS~qle~~kk~~ee~~~a~s~EI~~Lk~eie~L~~e~ 557 (810)
|+-..+|+.|-.+|....+......-+++.+|..|..++..|..++
T Consensus 6 Ekpi~eLe~kI~~L~~~~~~~~~~~~d~~~ei~~Le~k~~~l~k~i 51 (316)
T d2f9ya1 6 EQPIAELEAKIDSLTAGSRQDEKLDINIDEEVHRLREKSVELTRKI 51 (316)
T ss_dssp THHHHHTTTTTTC---------------CCGGGGTHHHHHTTTTHH
T ss_pred HHHHHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHHHHHH
T ss_conf 2489999999999985652166557877999999999999999998
No 8
>d1slqa_ f.47.1.1 (A:) VP4 membrane interaction domain {Rhesus rotavirus [TaxId: 10969]}
Probab=2.27 E-value=1.8e+02 Score=1.76 Aligned_cols=21 Identities=43% Similarity=0.425 Sum_probs=15.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHH
Q ss_conf 658999974288656879999
Q 003570 148 QDQTRQIISLSSERDALTIEC 168 (810)
Q Consensus 148 qdLsrEi~~lk~ERD~Lk~Ec 168 (810)
|||.|++..|++|-++|-+|+
T Consensus 240 qDLErqi~dLr~efN~ls~ei 260 (270)
T d1slqa_ 240 QDLERQLGELREEFNALSQEI 260 (270)
T ss_dssp HHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHH
T ss_conf 879999999999999999987
No 9
>d1hf2a2 c.102.1.1 (A:1-99) Cell-division inhibitor MinC, N-terminal domain {Thermotoga maritima [TaxId: 2336]}
Probab=1.90 E-value=1.5e+02 Score=2.39 Aligned_cols=60 Identities=15% Similarity=0.224 Sum_probs=36.8
Q ss_pred HHHHCCHHHHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf 311121898768876579999999996311013346776309998786799999999999998775310
Q 003570 491 DQNGVKLQELSDQLEQKDKQIQKMYLELDHSSSQLIDEHKSEAQKHEALSTEIHMLRTEIEKLRKEQYN 559 (810)
Q Consensus 491 dq~e~kl~eL~~qld~k~k~ie~m~~Ele~kS~qle~~kk~~ee~~~a~s~EI~~Lk~eie~L~~e~~~ 559 (810)
+.|. ++++|.++|+.|..+|-..+-.-|.-+--++|..+|-. .|-..-+.+..|..+...
T Consensus 16 ~~Y~-~lE~llneI~~K~~~m~~FFa~gdkI~LmiEn~~kk~~--------DIPkIvs~l~~lgl~Vk~ 75 (99)
T d1hf2a2 16 KDYQ-NLEEVLNAISARITQMGGFFAKGDRISLMIENHNKHSQ--------DIPRIVSHLRNLGLEVSQ 75 (99)
T ss_dssp CCCS-CHHHHHHHHHHHHHHTGGGCCTTCEEEEEETTHHHHGG--------GHHHHHHHHHHTTCEEEE
T ss_pred CCHH-HHHHHHHHHHHHHHHHHHHHCCCCEEEEECCCCCCCCH--------HHHHHHHHHHHCCCEEEE
T ss_conf 1555-69999999999999988663378879986103421501--------179999999975968888
No 10
>d1oqya1 a.5.2.1 (A:160-200) DNA repair protein Hhr23a {Human (Homo sapiens) [TaxId: 9606]}
Probab=1.65 E-value=2.7e+02 Score=0.51 Aligned_cols=20 Identities=25% Similarity=0.192 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHHH
Q ss_conf 99999999743343347999
Q 003570 417 RAEEELRKTRWKNTVTAERL 436 (810)
Q Consensus 417 ~AEeaLrKtR~~na~taErL 436 (810)
+|..||+++-||-..+++-|
T Consensus 20 ~a~~AL~~~~~N~e~A~~~L 39 (41)
T d1oqya1 20 RVVAALRASYNNPHRAVEYL 39 (41)
T ss_dssp HHHHHHHHSCSSTTHHHHTT
T ss_pred HHHHHHHHHCCCHHHHHHHH
T ss_conf 99999998589999999987
Done!