BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 003571
(810 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|2RDY|A Chain A, Crystal Structure Of A Putative Glycoside Hydrolase Family
Protein From Bacillus Halodurans
pdb|2RDY|B Chain B, Crystal Structure Of A Putative Glycoside Hydrolase Family
Protein From Bacillus Halodurans
Length = 803
Score = 598 bits (1541), Expect = e-171, Method: Compositional matrix adjust.
Identities = 328/766 (42%), Positives = 442/766 (57%), Gaps = 38/766 (4%)
Query: 13 LKITFNGPAKHFTDAIPIGNGRLGAMVWGGVPSETLKLNEDTLWTGVPGDYTNPDAPKAL 72
LKI F+ PA +T+A+PIGNG LGA V+G V E + LNEDTLW+G P D+ NP A + L
Sbjct: 3 LKIQFDFPASFWTEALPIGNGNLGAXVFGKVEKERIALNEDTLWSGYPKDWNNPKAKEVL 62
Query: 73 SDVRSLVDSGQYAEATAASVKLFGHPADVYQLLGDIELEFDDSHLKYAEETYRRELDLNT 132
VR L+ +Y EA S G Y GD+ + D H + Y RELDL+T
Sbjct: 63 PKVRELIAQEKYEEADQLSRDXXGPYTQSYLPFGDLNIFXD--HGQVVAPHYHRELDLST 120
Query: 133 ATARVKYSVGNVEFTREHFSSNPDQVIVTKISGSESGSLSFNVSLDSLLDNHSYVNGNNQ 192
V Y++G V++TRE F + PD+ IV +++ S+ G LSF LDSLL + S V G
Sbjct: 121 GIVTVTYTIGGVQYTRELFVTYPDRAIVVRLTASKEGFLSFRAKLDSLLRHVSSV-GAEH 179
Query: 193 IIMEGRCP--------GKRIPPKANANDDPKGIQFSAILEIKISDDRGTISALEDKKLKV 244
+ G P + P + D +G F L + + G ++ L V
Sbjct: 180 YTISGTAPEHVSPSYYDEENPVRYGHPDXSQGXTFHGRL---AAVNEGGSLKVDADGLHV 236
Query: 245 EGSDWAVLLLVASSSFDGPFINPSDSKKDPTSESMSALQSIRNLSYSDLYTRHLDDYQKL 304
G+ A L AS+SFD P S ++DP+ ++ +++I Y ++ RHL+DY KL
Sbjct: 237 XGATCATLYFSASTSFD-PSTGASCLERDPSLRTIETIKAICKRGYKEIVNRHLEDYTKL 295
Query: 305 FHRVSIQLSRS--PKDIVTDTCSEENIDTVPSAERVKSFQTDEDPSLVELLFQFGRYLLI 362
F+RVS+ L S P D TD +R+K + + D LVELLFQ+GRYL I
Sbjct: 296 FNRVSLHLGESIAPADXSTD-------------QRIKEYGS-RDLGLVELLFQYGRYLXI 341
Query: 363 SSSRPGTQVANLQGIWNEDLSPTWDSAPHVNINLEMNYWQSLPCNLSECQEPLFDFLTYL 422
+SSRPGTQ ANLQGIWNE+ W S +NIN E NYW + CNL+E +PL F+ L
Sbjct: 342 ASSRPGTQPANLQGIWNEETRAPWSSNYTLNINAEXNYWPAETCNLAELHKPLIHFIERL 401
Query: 423 SINGSKTAQVNYLASGWVIHHKTDIWAKSSA----DRGKVVWALWPMGGAWLCTHLWEHY 478
+ NG KTA++NY A GWV HH D+W +++ G VWA WP GG WL HLWEHY
Sbjct: 402 AANGKKTAEINYGARGWVAHHNADLWGQTAPVGDFGHGDPVWAFWPXGGVWLTQHLWEHY 461
Query: 479 NYTMDRDFLEKRAYPLLEGCASFLLDWLIEGHDGYLETNPSTSPEHEFIAPDGKLACVSY 538
+ D +L AYP+ + A F LDWLIE GYL T+PSTSPE F + K VS
Sbjct: 462 TFGEDEAYLRDTAYPIXKEAALFCLDWLIENEAGYLVTSPSTSPEQRFRIGE-KGYAVSS 520
Query: 539 SSTMDMAIIREVFSAIISAAEVLEKNEDALVEKVLKSLPRLRPTKIAEDGSIMEWAQDFK 598
++T D+++I E F I AA+ L +ED V+ + + RL P +I + G + EW+ DF+
Sbjct: 521 ATTXDLSLIAECFDNCIQAAKRLSIDED-FVKALSDAKQRLLPLQIGKRGQLQEWSNDFE 579
Query: 599 DPEVHHRHLSHLFGLFPGHTITIEKNPDLCKAAEKTLQKRGEEGPGWSITWKTALWARLH 658
D +VHHRH+SHL G++PG IT + P+L +AA+ +L+ RG+EG GWS+ WK +LWAR
Sbjct: 580 DEDVHHRHVSHLVGIYPGRLITEQSAPNLFEAAKTSLEIRGDEGTGWSLGWKISLWARFK 639
Query: 659 DQEHAYRMVKRLFNLVDPEHEKHFEGGLYSNLFAAHPPFQIDANFGFTAAVAEMLVQSTL 718
D R++ L+ + GG+Y+NLF AHPPFQID NF TA +AE L+QS
Sbjct: 640 DGNRCERLLSNXLTLIKEDESXQHRGGVYANLFGAHPPFQIDGNFSATAGIAEXLLQSHQ 699
Query: 719 NDLYLLPALPWDKWSSGCVKGLKARGGETVSICWKDGDLHEVGIYS 764
L LPALP D W G VKGL+ RGG V + W +G L +V I S
Sbjct: 700 GYLEFLPALP-DSWKDGYVKGLRGRGGYEVDLAWTNGALVKVEIVS 744
>pdb|2EAB|A Chain A, Crystal Structure Of 1,2-A-L-Fucosidase From
Bifidobacterium Bifidum (Apo Form)
pdb|2EAB|B Chain B, Crystal Structure Of 1,2-A-L-Fucosidase From
Bifidobacterium Bifidum (Apo Form)
pdb|2EAC|A Chain A, Crystal Structure Of 1,2-A-L-Fucosidase From
Bifidobacterium Bifidum In Complex With
Deoxyfuconojirimycin
pdb|2EAC|B Chain B, Crystal Structure Of 1,2-A-L-Fucosidase From
Bifidobacterium Bifidum In Complex With
Deoxyfuconojirimycin
Length = 899
Score = 301 bits (772), Expect = 7e-82, Method: Compositional matrix adjust.
Identities = 248/872 (28%), Positives = 397/872 (45%), Gaps = 139/872 (15%)
Query: 28 IPIGNGRLGAMVWGGVPSETLKLNEDTLWTGVPGDYT------NPDAPKALSDVRSLVDS 81
+P GNG++G VWG V E + NE+TLWTG PG T N + + +R+L
Sbjct: 52 LPFGNGKIGGTVWGEVSRERVTFNEETLWTGGPGSSTSYNGGNNETKGQNGATLRALNKQ 111
Query: 82 GQYAEATAASVKLFG--HPADVYQLL--GDIELEFDDSHLKYAEETYRRELDLNTATARV 137
T L G + A+ L GDI L++ + E YRR+L+L+ A V
Sbjct: 112 LANGAETVNPGNLTGGENAAEQGNYLNWGDIYLDYGFNDTTVTE--YRRDLNLSKGKADV 169
Query: 138 KYSVGNVEFTREHFSSNPDQVIVTKISGSESGSLSFNVSLDSLLDNHSYVNGNNQIIMEG 197
+ V +TRE+F+SNPD V+V +++ S++G L+FNVS+ + N +Y ++G
Sbjct: 170 TFKHDGVTYTREYFASNPDNVMVARLTASKAGKLNFNVSMPT---NTNYSKTGETTTVKG 226
Query: 198 RCPGKRIPPKANANDDPKGIQFSAILEIKISDDRGTISALED-KKLKVEGSDWAVLLLVA 256
+ N G+ +++ +++ + + GT+S D LKV + L + A
Sbjct: 227 DTLTVKGALGNN------GLLYNSQIKVVLDNGEGTLSEGSDGASLKVSDAKAVTLYIAA 280
Query: 257 SSSFDG--PFINPSDSKKDPTSESMSALQSIRNLSYSDLYTRHLDDYQKLFHRVSIQLSR 314
++ + P ++ + + +Q N Y+ + H+DD+ ++ RV I L +
Sbjct: 281 ATDYKQKYPSYRTGETAAEVNTRVAKVVQDAANKGYTAVKKAHIDDHSAIYDRVKIDLGQ 340
Query: 315 SPKDIVTDTCSEENIDTVPSAERVKSFQTDEDPSLVELLFQFGRYLLISSSRPGTQV-AN 373
S + D + A + S T + L L++++GRYL I SSR +Q+ +N
Sbjct: 341 SGHSSDGAVAT----DALLKAYQRGSATTAQKRELETLVYKYGRYLTIGSSRENSQLPSN 396
Query: 374 LQGIW------NEDLSPTWDSAPHVNINLEMNYWQSLPCNLSECQEPLFDFLTYLSINGS 427
LQGIW N + W S H+N+NL+MNYW + N+ E EPL +++ L G
Sbjct: 397 LQGIWSVTAGDNAHGNTPWGSDFHMNVNLQMNYWPTYSANMGELAEPLIEYVEGLVKPGR 456
Query: 428 KTAQVNYLA-------------SGWVIHHKTDIWAKSSADRGKVVWALWPMGGAWLCTHL 474
TA+V A G++ H + + ++ + W P W+ ++
Sbjct: 457 VTAKVYAGAETTNPETTPIGEGEGYMAHTENTAYGWTAPGQ-SFSWGWSPAAVPWILQNV 515
Query: 475 WEHYNYTMDRDFLEKRAYPLLEGCASFLLDWLI----EGHDGYLETNPSTSPEHEFIAPD 530
+E Y Y+ D L+ R Y LL+ + F +++++ L T + SPE + D
Sbjct: 516 YEAYEYSGDPALLD-RVYALLKEESHFYVNYMLHKAGSSSGDRLTTGVAYSPEQGPLGTD 574
Query: 531 GKLACVSYSSTMDMAIIREVFSAIIS--------------AAEVLEKNE-----DALVEK 571
G +Y S++ ++ + A + +A+ KN+ DA +
Sbjct: 575 GN----TYESSLVWQMLNDAIEAAKAKGDPDGLVGNTTDCSADNWAKNDSGNFTDANANR 630
Query: 572 ---VLKSLPRLRPTKIAEDGSIMEWAQDF-----KDPEV--------HHRHLSHLFGLFP 615
KSL L+P ++ + G I EW + KD HRH+SHL GLFP
Sbjct: 631 SWSCAKSL--LKPIEVGDSGQIKEWYFEGALGKKKDGSTISGYQADNQHRHMSHLLGLFP 688
Query: 616 GHTITIEKNPDLCKAAEKTLQKRGEEG------PGWSITWKTALWARLHDQEHAYRMVKR 669
G ITI+ N + AA+ +L+ R +G GW+I + WAR D Y++V
Sbjct: 689 GDLITID-NSEYMDAAKTSLRYRCFKGNVLQSNTGWAIGQRINSWARTGDGNTTYQLV-- 745
Query: 670 LFNLVDPEHEKHFEGGLYSNLFAAHPPFQIDANFGFTAAVAEMLVQST-----------L 718
E + +Y+NLF H PFQID NFG T+ V EML+QS +
Sbjct: 746 ---------ELQLKNAMYANLFDYHAPFQIDGNFGNTSGVDEMLLQSNSTFTDTAGKKYV 796
Query: 719 NDLYLLPALPWDKWSSGCVKGLKARGGETVSICWKDGDLHEVGIYSNYSNNDHDSFKTLH 778
N +LPALP D W+ G V GL ARG TV WK+G EV + SN
Sbjct: 797 NYTNILPALP-DAWAGGSVSGLVARGNFTVGTTWKNGKATEVRLTSN------------- 842
Query: 779 YRGTSVKVNLSAGKIYTFNRQLKCTNLHQSIV 810
+G V ++AG + + T ++ +V
Sbjct: 843 -KGKQAAVKITAGGAQNYEVKNGDTAVNAKVV 873
>pdb|2EAD|A Chain A, Crystal Structure Of 1,2-A-L-Fucosidase From
Bifidobacterium Bifidum In Complex With Substrate
pdb|2EAD|B Chain B, Crystal Structure Of 1,2-A-L-Fucosidase From
Bifidobacterium Bifidum In Complex With Substrate
Length = 899
Score = 300 bits (767), Expect = 3e-81, Method: Compositional matrix adjust.
Identities = 247/872 (28%), Positives = 398/872 (45%), Gaps = 139/872 (15%)
Query: 28 IPIGNGRLGAMVWGGVPSETLKLNEDTLWTGVPGDYT------NPDAPKALSDVRSLVDS 81
+P GNG++G VWG V E + NE+TLWTG PG T N + + +R+L
Sbjct: 52 LPFGNGKIGGTVWGEVSRERVTFNEETLWTGGPGSSTSYNGGNNETKGQNGATLRALNKQ 111
Query: 82 GQYAEATAASVKLFG--HPADVYQLL--GDIELEFDDSHLKYAEETYRRELDLNTATARV 137
T L G + A+ L GDI L++ + E YRR+L+L+ A V
Sbjct: 112 LANGAETVNPGNLTGGENAAEQGNYLNWGDIYLDYGFNDTTVTE--YRRDLNLSKGKADV 169
Query: 138 KYSVGNVEFTREHFSSNPDQVIVTKISGSESGSLSFNVSLDSLLDNHSYVNGNNQIIMEG 197
+ V +TRE+F+SNPD V+V +++ S++G L+FNVS+ + N +Y ++G
Sbjct: 170 TFKHDGVTYTREYFASNPDNVMVARLTASKAGKLNFNVSMPT---NTNYSKTGETTTVKG 226
Query: 198 RCPGKRIPPKANANDDPKGIQFSAILEIKISDDRGTISALED-KKLKVEGSDWAVLLLVA 256
+ K ++ G+ +++ +++ + + GT+S D LKV + L + A
Sbjct: 227 DT----LTVKGALGNN--GLLYNSQIKVVLDNGEGTLSEGSDGASLKVSDAKAVTLYIAA 280
Query: 257 SSSFDG--PFINPSDSKKDPTSESMSALQSIRNLSYSDLYTRHLDDYQKLFHRVSIQLSR 314
++ + P ++ + + +Q N Y+ + H+DD+ ++ RV I L +
Sbjct: 281 ATDYKQKYPSYRTGETAAEVNTRVAKVVQDAANKGYTAVKKAHIDDHSAIYDRVKIDLGQ 340
Query: 315 SPKDIVTDTCSEENIDTVPSAERVKSFQTDEDPSLVELLFQFGRYLLISSSRPGTQV-AN 373
S + D + A + S T + L L++++GRYL I SSR +Q+ +N
Sbjct: 341 SGHSSDGAVAT----DALLKAYQRGSATTAQKRELETLVYKYGRYLTIGSSRENSQLPSN 396
Query: 374 LQGIW------NEDLSPTWDSAPHVNINLEMNYWQSLPCNLSECQEPLFDFLTYLSINGS 427
LQGIW N + W S H+N+NL+MNYW + N+ E EPL +++ L G
Sbjct: 397 LQGIWSVTAGDNAHGNTPWGSDFHMNVNLQMNYWPTYSANMGELAEPLIEYVEGLVKPGR 456
Query: 428 KTAQVNYLA-------------SGWVIHHKTDIWAKSSADRGKVVWALWPMGGAWLCTHL 474
TA+V A G++ H + + ++ + W P W+ ++
Sbjct: 457 VTAKVYAGAETTNPETTPIGEGEGYMAHTENTAYGWTAPGQ-SFSWGWSPAAVPWILQNV 515
Query: 475 WEHYNYTMDRDFLEKRAYPLLEGCASFLLDWLI----EGHDGYLETNPSTSPEHEFIAPD 530
+E Y Y+ D L+ R Y LL+ + F +++++ L T + SP + D
Sbjct: 516 YEAYEYSGDPALLD-RVYALLKEESHFYVNYMLHKAGSSSGDRLTTGVAYSPAQGPLGTD 574
Query: 531 GKLACVSYSSTMDMAIIREVFSAIIS--------------AAEVLEKNE-----DALVEK 571
G +Y S++ ++ + A + +A+ KN+ DA +
Sbjct: 575 GN----TYESSLVWQMLNDAIEAAKAKGDPDGLVGNTTDCSADNWAKNDSGNFTDANANR 630
Query: 572 ---VLKSLPRLRPTKIAEDGSIMEWAQDF-----KDPEV--------HHRHLSHLFGLFP 615
KSL L+P ++ + G I EW + KD HRH+SHL GLFP
Sbjct: 631 SWSCAKSL--LKPIEVGDSGQIKEWYFEGALGKKKDGSTISGYQADNQHRHMSHLLGLFP 688
Query: 616 GHTITIEKNPDLCKAAEKTLQKRGEEG------PGWSITWKTALWARLHDQEHAYRMVKR 669
G ITI+ N + AA+ +L+ R +G GW+I + WAR D Y++V
Sbjct: 689 GDLITID-NSEYMDAAKTSLRYRCFKGNVLQSNTGWAIGQRINSWARTGDGNTTYQLV-- 745
Query: 670 LFNLVDPEHEKHFEGGLYSNLFAAHPPFQIDANFGFTAAVAEMLVQST-----------L 718
E + +Y+NLF H PFQID NFG T+ V EML+QS +
Sbjct: 746 ---------ELQLKNAMYANLFDYHAPFQIDGNFGNTSGVDEMLLQSNSTFTDTAGKKYV 796
Query: 719 NDLYLLPALPWDKWSSGCVKGLKARGGETVSICWKDGDLHEVGIYSNYSNNDHDSFKTLH 778
N +LPALP D W+ G V GL ARG TV WK+G EV + SN
Sbjct: 797 NYTNILPALP-DAWAGGSVSGLVARGNFTVGTTWKNGKATEVRLTSN------------- 842
Query: 779 YRGTSVKVNLSAGKIYTFNRQLKCTNLHQSIV 810
+G V ++AG + + T ++ +V
Sbjct: 843 -KGKQAAVKITAGGAQNYEVKNGDTAVNAKVV 873
>pdb|2EAE|A Chain A, Crystal Structure Of 1,2-A-L-Fucosidase From
Bifidobacterium Bifidum In Complexes With Products
Length = 898
Score = 298 bits (764), Expect = 6e-81, Method: Compositional matrix adjust.
Identities = 247/872 (28%), Positives = 396/872 (45%), Gaps = 139/872 (15%)
Query: 28 IPIGNGRLGAMVWGGVPSETLKLNEDTLWTGVPGDYT------NPDAPKALSDVRSLVDS 81
+P GNG++G VWG V E + NE+TLWTG PG T N + + +R+L
Sbjct: 51 LPFGNGKIGGTVWGEVSRERVTFNEETLWTGGPGSSTSYNGGNNETKGQNGATLRALNKQ 110
Query: 82 GQYAEATAASVKLFG--HPADVYQLL--GDIELEFDDSHLKYAEETYRRELDLNTATARV 137
T L G + A+ L GDI L++ + E YRR+L+L+ A V
Sbjct: 111 LANGAETVNPGNLTGGENAAEQGNYLNWGDIYLDYGFNDTTVTE--YRRDLNLSKGKADV 168
Query: 138 KYSVGNVEFTREHFSSNPDQVIVTKISGSESGSLSFNVSLDSLLDNHSYVNGNNQIIMEG 197
+ V +TRE+F+SNPD V+V +++ S++G L+FNVS+ + N +Y ++G
Sbjct: 169 TFKHDGVTYTREYFASNPDNVMVARLTASKAGKLNFNVSMPT---NTNYSKTGETTTVKG 225
Query: 198 RCPGKRIPPKANANDDPKGIQFSAILEIKISDDRGTISALED-KKLKVEGSDWAVLLLVA 256
+ N G+ +++ +++ + + GT+S D LKV + L + A
Sbjct: 226 DTLTVKGALGNN------GLLYNSQIKVVLDNGEGTLSEGSDGASLKVSDAKAVTLYIAA 279
Query: 257 SSSFDG--PFINPSDSKKDPTSESMSALQSIRNLSYSDLYTRHLDDYQKLFHRVSIQLSR 314
++ + P ++ + + +Q N Y+ + H+DD+ ++ RV I L +
Sbjct: 280 ATDYKQKYPSYRTGETAAEVNTRVAKVVQDAANKGYTAVKKAHIDDHSAIYDRVKIDLGQ 339
Query: 315 SPKDIVTDTCSEENIDTVPSAERVKSFQTDEDPSLVELLFQFGRYLLISSSRPGTQV-AN 373
S + D + A + S T + L L++++GRYL I SSR +Q+ +N
Sbjct: 340 SGHSSDGAVAT----DALLKAYQRGSATTAQKRELETLVYKYGRYLTIGSSRENSQLPSN 395
Query: 374 LQGIW------NEDLSPTWDSAPHVNINLEMNYWQSLPCNLSECQEPLFDFLTYLSINGS 427
LQGIW N + W S H+N+NL+MNYW + N+ E EPL +++ L G
Sbjct: 396 LQGIWSVTAGDNAHGNTPWGSDFHMNVNLQMNYWPTYSANMGELAEPLIEYVEGLVKPGR 455
Query: 428 KTAQVNYLA-------------SGWVIHHKTDIWAKSSADRGKVVWALWPMGGAWLCTHL 474
TA+V A G++ H + + ++ + W P W+ ++
Sbjct: 456 VTAKVYAGAETTNPETTPIGEGEGYMAHTENTAYGWTAPGQ-SFSWGWSPAAVPWILQNV 514
Query: 475 WEHYNYTMDRDFLEKRAYPLLEGCASFLLDWLI----EGHDGYLETNPSTSPEHEFIAPD 530
+E Y Y+ D L+ R Y LL+ + F +++++ L T + SPE + D
Sbjct: 515 YEAYEYSGDPALLD-RVYALLKEESHFYVNYMLHKAGSSSGDRLTTGVAYSPEQGPLGTD 573
Query: 531 GKLACVSYSSTMDMAIIREVFSAIIS--------------AAEVLEKNE-----DALVEK 571
G +Y S++ ++ + A + +A+ KN+ DA +
Sbjct: 574 GN----TYESSLVWQMLNDAIEAAKAKGDPDGLVGNTTDCSADNWAKNDSGNFTDANANR 629
Query: 572 ---VLKSLPRLRPTKIAEDGSIMEWAQDF-----KDPEV--------HHRHLSHLFGLFP 615
KSL L+P ++ + G I EW + KD HRH+SHL GLFP
Sbjct: 630 SWSCAKSL--LKPIEVGDSGQIKEWYFEGALGKKKDGSTISGYQADNQHRHMSHLLGLFP 687
Query: 616 GHTITIEKNPDLCKAAEKTLQKRGEEG------PGWSITWKTALWARLHDQEHAYRMVKR 669
G ITI+ N + AA+ +L+ R +G GW+I + WAR D Y++V
Sbjct: 688 GDLITID-NSEYMDAAKTSLRYRCFKGNVLQSNTGWAIGQRINSWARTGDGNTTYQLV-- 744
Query: 670 LFNLVDPEHEKHFEGGLYSNLFAAHPPFQIDANFGFTAAVAEMLVQST-----------L 718
E + +Y+NLF H PFQI NFG T+ V EML+QS +
Sbjct: 745 ---------ELQLKNAMYANLFDYHAPFQIAGNFGNTSGVDEMLLQSNSTFTDTAGKKYV 795
Query: 719 NDLYLLPALPWDKWSSGCVKGLKARGGETVSICWKDGDLHEVGIYSNYSNNDHDSFKTLH 778
N +LPALP D W+ G V GL ARG TV WK+G EV + SN
Sbjct: 796 NYTNILPALP-DAWAGGSVSGLVARGNFTVGTTWKNGKATEVRLTSN------------- 841
Query: 779 YRGTSVKVNLSAGKIYTFNRQLKCTNLHQSIV 810
+G V ++AG + + T ++ +V
Sbjct: 842 -KGKQAAVKITAGGAQNYEVKNGDTAVNAKVV 872
>pdb|2FY2|A Chain A, Structures Of Ligand Bound Human Choline Acetyltransferase
Provide Insight Into Regulation Of Acetylcholine
Synthesis
pdb|2FY3|A Chain A, Structures Of Ligand Bound Human Choline Acetyltransferase
Provides Insight Into Regulation Of Acetylcholine
Synthesis
pdb|2FY4|A Chain A, Structures Of Ligand Bound Human Choline Acetyltransferase
Provide Insight Into Regulation Of Acetylcholine
Synthesis
pdb|2FY5|A Chain A, Structures Of Ligand Bound Human Choline Acetyltransferase
Provide Insight Into Regulation Of Acetylcholine
Synthesis
Length = 612
Score = 37.7 bits (86), Expect = 0.027, Method: Compositional matrix adjust.
Identities = 35/115 (30%), Positives = 54/115 (46%), Gaps = 9/115 (7%)
Query: 72 LSDVRSLVDSGQYAEATAASVKLFGHPADVYQLLGDIELEFDDSHLKYAEETYRRELDLN 131
L +R LV Q+ ++ A V+ FG P + + L LE + + E + ++ LN
Sbjct: 29 LQCMRHLVSEEQFRKSQAI-VQQFGAPGGLGETLQQKLLERQEKTANWVSEYWLNDMYLN 87
Query: 132 TATARVKYSVGNVEFTREHFSSNPDQVIVTKISGSE-SGSLSFNVSLDSLLDNHS 185
A S V F R+HF DQ+ + + S SG LS+ +LLD+HS
Sbjct: 88 NRLALPVNSSPAVIFARQHFPGTDDQL---RFAASLISGVLSYK----ALLDSHS 135
>pdb|1Q6X|A Chain A, Crystal Structure Of Rat Choline Acetyltransferase
pdb|1Q6X|B Chain B, Crystal Structure Of Rat Choline Acetyltransferase
Length = 644
Score = 37.4 bits (85), Expect = 0.037, Method: Compositional matrix adjust.
Identities = 34/114 (29%), Positives = 53/114 (46%), Gaps = 7/114 (6%)
Query: 72 LSDVRSLVDSGQYAEATAASVKLFGHPADVYQLLGDIELEFDDSHLKYAEETYRRELDLN 131
L ++ LV Q+ ++ A VK FG P + + L + LE + + E + ++ LN
Sbjct: 39 LQCMQHLVPEEQFRKSQAI-VKRFGAPGGLGETLQEKLLERQEKTANWVSEYWLNDMYLN 97
Query: 132 TATARVKYSVGNVEFTREHFSSNPDQVIVTKISGSESGSLSFNVSLDSLLDNHS 185
A S V F R+HF DQ+ + SG LS+ +LLD+HS
Sbjct: 98 NRLALPVNSSPAVIFARQHFQDTNDQLRFA--ACLISGVLSYK----TLLDSHS 145
>pdb|1T1U|A Chain A, Structural Insights And Functional Implications Of Choline
Acetyltransferase
Length = 639
Score = 37.0 bits (84), Expect = 0.040, Method: Compositional matrix adjust.
Identities = 34/114 (29%), Positives = 53/114 (46%), Gaps = 7/114 (6%)
Query: 72 LSDVRSLVDSGQYAEATAASVKLFGHPADVYQLLGDIELEFDDSHLKYAEETYRRELDLN 131
L ++ LV Q+ ++ A VK FG P + + L + LE + + E + ++ LN
Sbjct: 38 LQCMQHLVPEEQFRKSQAI-VKRFGAPGGLGETLQEKLLERQEKTANWVSEYWLNDMYLN 96
Query: 132 TATARVKYSVGNVEFTREHFSSNPDQVIVTKISGSESGSLSFNVSLDSLLDNHS 185
A S V F R+HF DQ+ + SG LS+ +LLD+HS
Sbjct: 97 NRLALPVNSSPAVIFARQHFQDTNDQLRFA--ACLISGVLSYK----TLLDSHS 144
>pdb|1JCF|A Chain A, Mreb From Thermotoga Maritima, Trigonal
pdb|1JCG|A Chain A, Mreb From Thermotoga Maritima, Amppnp
pdb|2WUS|A Chain A, Bacterial Actin Mreb Assembles In Complex With Cell Shape
Protein Rodz
pdb|2WUS|B Chain B, Bacterial Actin Mreb Assembles In Complex With Cell Shape
Protein Rodz
Length = 344
Score = 32.3 bits (72), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 16/40 (40%), Positives = 25/40 (62%), Gaps = 1/40 (2%)
Query: 111 EFDDSHLKYAEETYRRELDLNTATARVKYSVGNVEFTREH 150
E D++ ++Y ETYR + TA RVK +GNV ++E+
Sbjct: 181 EMDEAIVQYVRETYRVAIGERTA-ERVKIEIGNVFPSKEN 219
>pdb|3EP1|A Chain A, Structure Of The Pgrp-Hd From Alvinella Pompejana
pdb|3EP1|B Chain B, Structure Of The Pgrp-Hd From Alvinella Pompejana
Length = 176
Score = 30.8 bits (68), Expect = 3.5, Method: Composition-based stats.
Identities = 21/70 (30%), Positives = 32/70 (45%), Gaps = 1/70 (1%)
Query: 40 WGGVPSETLKLNEDTLWTGVPGDYTNPDAPKALSDVRS-LVDSGQYAEATAASVKLFGHP 98
WG V T + ++ V GD+ + +AL D S L+ GQ AE ++ +L P
Sbjct: 96 WGVVGQHTKGRDSHSIGVAVIGDFGKKEPSQALQDALSKLIICGQAAEELSSGARLRTTP 155
Query: 99 ADVYQLLGDI 108
A Q D+
Sbjct: 156 AMSGQAFYDM 165
>pdb|1G9K|A Chain A, Crystal Structure Of A Psychrophilic Alkaline Protease
From Pseudomonas Tac Ii 18
pdb|1O0Q|A Chain A, Crystal Structure Of A Cold Adapted Alkaline Protease From
Pseudomonas Tac Ii 18, Co-Crystallized With 1 Mm Edta
pdb|1O0T|A Chain A, Crystal Structure Of A Cold Adapted Alkaline Protease From
Pseudomonas Tac Ii 18, Co-Crystallized With 5 Mm Edta (5
Days)
pdb|1OM6|A Chain A, Crystal Structure Of A Cold Adapted Alkaline Protease From
Pseudomonas Tac Ii 18, Co-Crystallized With 5mm Edta (2
Months)
pdb|1OM7|A Chain A, Crystal Structure Of A Cold Adapted Alkaline Protease From
Pseudomonas Tac Ii 18, Soaked In 85 Mm Edta
pdb|1OM8|A Chain A, Crystal Structure Of A Cold Adapted Alkaline Protease From
Pseudomonas Tac Ii 18, Co-Crystallyzed With 10 Mm Edta
pdb|1OMJ|A Chain A, Crystal Structure Of A Psychrophilic Alkaline Protease
From Pseudomonas Tac Ii 18
Length = 463
Score = 30.4 bits (67), Expect = 4.0, Method: Compositional matrix adjust.
Identities = 52/230 (22%), Positives = 90/230 (39%), Gaps = 26/230 (11%)
Query: 85 AEATAASVKLFGHPADVYQLLG-DIELEFDDSHLKYAEETYRRELDLNTATARVKYSV-- 141
E AS L A V +L G ++E DD+ + R ++T ++ +SV
Sbjct: 223 GEGAYASAPLLDDIAAVQKLYGANLETRADDTVYGFNSTADRDFYSATSSTDKLIFSVWD 282
Query: 142 --GNVEFTREHFSSNPDQVIVTKISGSESGSLSFNVSLDSLLDNHSYVNGNNQIIMEGRC 199
GN FS N ++ +T S S+ G ++ NVS+ + + + G+ ++ G
Sbjct: 283 GGGNDTLDFSGFSQNQ-KINLTAGSFSDVGGMTGNVSIAQGVTIENAIGGSGNDLLIGND 341
Query: 200 PGKRIPPKANANDDPKGIQFSAILEIKISDDRGTISALEDKKLKVEGSDWAVLLLVASSS 259
+ A ND G + +L D A+ D K A ++ S
Sbjct: 342 AANVLKGGA-GNDIIYGGGGADVLWGGTGSDTFVFGAVSDSTPKA-----ADIIKDFQSG 395
Query: 260 FDGPFINPSDSKKDPTSESMSALQSIRNLSYSDLYTRHLDDYQKLFHRVS 309
FD K D ++A+ + L++ D +T H D +H+ S
Sbjct: 396 FD---------KID-----LTAITKLGGLNFVDAFTGHAGDAIVSYHQAS 431
>pdb|1M5N|S Chain S, Crystal Structure Of Heat Repeats (1-11) Of Importin B
Bound To The Non-Classical Nls(67-94) Of Pthrp
Length = 485
Score = 30.4 bits (67), Expect = 4.2, Method: Compositional matrix adjust.
Identities = 15/53 (28%), Positives = 25/53 (47%), Gaps = 6/53 (11%)
Query: 709 VAEMLVQSTLNDLYLLPALPWDKWSSGCVKGLKARGGETVSICWKDGDLHEVG 761
+ E+L ++ +ND+YL P L ++GL A ++CW L E
Sbjct: 435 ICELLPEAAINDVYLAPLL------QCLIEGLSAEPRVASNVCWAFSSLAEAA 481
>pdb|1H71|P Chain P, Psychrophilic Protease From Pseudoalteromonas 'tac Ii 18'
Length = 463
Score = 30.4 bits (67), Expect = 4.4, Method: Compositional matrix adjust.
Identities = 52/230 (22%), Positives = 90/230 (39%), Gaps = 26/230 (11%)
Query: 85 AEATAASVKLFGHPADVYQLLG-DIELEFDDSHLKYAEETYRRELDLNTATARVKYSV-- 141
E AS L A V +L G ++E DD+ + R ++T ++ +SV
Sbjct: 223 GEGAYASAPLLDDIAAVQKLYGANLETRADDTVYGFNSTADRDFYSATSSTDKLIFSVWD 282
Query: 142 --GNVEFTREHFSSNPDQVIVTKISGSESGSLSFNVSLDSLLDNHSYVNGNNQIIMEGRC 199
GN FS N ++ +T S S+ G ++ NVS+ + + + G+ ++ G
Sbjct: 283 GGGNDTLDFSGFSQNQ-KINLTAGSFSDVGGMTGNVSIAQGVTIENAIGGSGNDLLIGND 341
Query: 200 PGKRIPPKANANDDPKGIQFSAILEIKISDDRGTISALEDKKLKVEGSDWAVLLLVASSS 259
+ A ND G + +L D A+ D K A ++ S
Sbjct: 342 AANVLKGGA-GNDIIYGGGGADVLWGGTGSDTFVFGAVSDSTPKA-----ADIIKDFQSG 395
Query: 260 FDGPFINPSDSKKDPTSESMSALQSIRNLSYSDLYTRHLDDYQKLFHRVS 309
FD K D ++A+ + L++ D +T H D +H+ S
Sbjct: 396 FD---------KID-----LTAITKLGGLNFVDAFTGHAGDAIVSYHQAS 431
>pdb|3FYS|A Chain A, Crystal Structure Of Degv, A Fatty Acid Binding Protein
From Bacillus Subtilis
Length = 315
Score = 30.0 bits (66), Expect = 5.0, Method: Compositional matrix adjust.
Identities = 21/77 (27%), Positives = 33/77 (42%), Gaps = 12/77 (15%)
Query: 119 YAEETYRRELDL------------NTATARVKYSVGNVEFTREHFSSNPDQVIVTKISGS 166
+ EETYR E++L N + +G + E + D VI +S
Sbjct: 66 FREETYREEIELDWKSFYEEVKKHNELPTTSQPPIGELVALYEELGKSYDAVISIHLSSG 125
Query: 167 ESGSLSFNVSLDSLLDN 183
SG+ S + DS++DN
Sbjct: 126 ISGTFSSAAAADSMVDN 142
>pdb|1UKL|A Chain A, Crystal Structure Of Importin-Beta And Srebp-2 Complex
pdb|1UKL|B Chain B, Crystal Structure Of Importin-Beta And Srebp-2 Complex
Length = 876
Score = 29.3 bits (64), Expect = 8.0, Method: Compositional matrix adjust.
Identities = 15/53 (28%), Positives = 25/53 (47%), Gaps = 6/53 (11%)
Query: 709 VAEMLVQSTLNDLYLLPALPWDKWSSGCVKGLKARGGETVSICWKDGDLHEVG 761
+ E+L ++ +ND+YL P L ++GL A ++CW L E
Sbjct: 435 ICELLPEAAINDVYLAPLL------QCLIEGLSAEPRVASNVCWAFSSLAEAA 481
>pdb|2P8Q|A Chain A, Crystal Structure Of Human Importin Beta Bound To The
Snurportin1 Ibb- Domain
pdb|2Q5D|A Chain A, Crystal Structure Of Human Importin Beta Bound To The
Snurportin1 Ibb-Domain Second Crystal Form
pdb|2Q5D|B Chain B, Crystal Structure Of Human Importin Beta Bound To The
Snurportin1 Ibb-Domain Second Crystal Form
pdb|3LWW|A Chain A, Structure Of An Open And Closed Conformation Of Human
Importin Beta Bound To The Snurportin1 Ibb-Domain
Trapped In The Same Crystallographic Asymmetric Unit
pdb|3LWW|C Chain C, Structure Of An Open And Closed Conformation Of Human
Importin Beta Bound To The Snurportin1 Ibb-Domain
Trapped In The Same Crystallographic Asymmetric Unit
Length = 876
Score = 29.3 bits (64), Expect = 8.0, Method: Compositional matrix adjust.
Identities = 15/53 (28%), Positives = 25/53 (47%), Gaps = 6/53 (11%)
Query: 709 VAEMLVQSTLNDLYLLPALPWDKWSSGCVKGLKARGGETVSICWKDGDLHEVG 761
+ E+L ++ +ND+YL P L ++GL A ++CW L E
Sbjct: 435 ICELLPEAAINDVYLAPLL------QCLIEGLSAEPRVASNVCWAFSSLAEAA 481
>pdb|1QGK|A Chain A, Structure Of Importin Beta Bound To The Ibb Domain Of
Importin Alpha
pdb|1QGR|A Chain A, Structure Of Importin Beta Bound To The Ibb Domain Of
Importin Alpha (Ii Crystal Form, Grown At Low Ph)
Length = 876
Score = 29.3 bits (64), Expect = 8.1, Method: Compositional matrix adjust.
Identities = 15/53 (28%), Positives = 25/53 (47%), Gaps = 6/53 (11%)
Query: 709 VAEMLVQSTLNDLYLLPALPWDKWSSGCVKGLKARGGETVSICWKDGDLHEVG 761
+ E+L ++ +ND+YL P L ++GL A ++CW L E
Sbjct: 435 ICELLPEAAINDVYLAPLL------QCLIEGLSAEPRVASNVCWAFSSLAEAA 481
>pdb|2Q7F|A Chain A, Crystal Structure Of Yrrb: A Tpr Protein With An Unusual
Peptide- Binding Site
pdb|2Q7F|B Chain B, Crystal Structure Of Yrrb: A Tpr Protein With An Unusual
Peptide- Binding Site
Length = 243
Score = 29.3 bits (64), Expect = 9.0, Method: Composition-based stats.
Identities = 16/59 (27%), Positives = 28/59 (47%)
Query: 115 SHLKYAEETYRRELDLNTATARVKYSVGNVEFTREHFSSNPDQVIVTKISGSESGSLSF 173
+ L+ A Y + L+L+++ A Y GNV +E + D +G E+G L +
Sbjct: 71 NELERALAFYDKALELDSSAATAYYGAGNVYVVKEMYKEAKDMFEKALRAGMENGDLFY 129
>pdb|2XF8|A Chain A, Structure Of The D-Erythrose-4-Phosphate Dehydrogenase
From E.Coli In Complex With A Nad Cofactor Analog (3-
Chloroacetyl Adenine Pyridine Dinucleotide) And Sulfate
Anion
pdb|2XF8|B Chain B, Structure Of The D-Erythrose-4-Phosphate Dehydrogenase
From E.Coli In Complex With A Nad Cofactor Analog (3-
Chloroacetyl Adenine Pyridine Dinucleotide) And Sulfate
Anion
pdb|2XF8|C Chain C, Structure Of The D-Erythrose-4-Phosphate Dehydrogenase
From E.Coli In Complex With A Nad Cofactor Analog (3-
Chloroacetyl Adenine Pyridine Dinucleotide) And Sulfate
Anion
pdb|2XF8|D Chain D, Structure Of The D-Erythrose-4-Phosphate Dehydrogenase
From E.Coli In Complex With A Nad Cofactor Analog (3-
Chloroacetyl Adenine Pyridine Dinucleotide) And Sulfate
Anion
pdb|2XF8|E Chain E, Structure Of The D-Erythrose-4-Phosphate Dehydrogenase
From E.Coli In Complex With A Nad Cofactor Analog (3-
Chloroacetyl Adenine Pyridine Dinucleotide) And Sulfate
Anion
pdb|2XF8|F Chain F, Structure Of The D-Erythrose-4-Phosphate Dehydrogenase
From E.Coli In Complex With A Nad Cofactor Analog (3-
Chloroacetyl Adenine Pyridine Dinucleotide) And Sulfate
Anion
pdb|2XF8|G Chain G, Structure Of The D-Erythrose-4-Phosphate Dehydrogenase
From E.Coli In Complex With A Nad Cofactor Analog (3-
Chloroacetyl Adenine Pyridine Dinucleotide) And Sulfate
Anion
pdb|2XF8|H Chain H, Structure Of The D-Erythrose-4-Phosphate Dehydrogenase
From E.Coli In Complex With A Nad Cofactor Analog (3-
Chloroacetyl Adenine Pyridine Dinucleotide) And Sulfate
Anion
pdb|2XF8|I Chain I, Structure Of The D-Erythrose-4-Phosphate Dehydrogenase
From E.Coli In Complex With A Nad Cofactor Analog (3-
Chloroacetyl Adenine Pyridine Dinucleotide) And Sulfate
Anion
pdb|2XF8|J Chain J, Structure Of The D-Erythrose-4-Phosphate Dehydrogenase
From E.Coli In Complex With A Nad Cofactor Analog (3-
Chloroacetyl Adenine Pyridine Dinucleotide) And Sulfate
Anion
pdb|2XF8|K Chain K, Structure Of The D-Erythrose-4-Phosphate Dehydrogenase
From E.Coli In Complex With A Nad Cofactor Analog (3-
Chloroacetyl Adenine Pyridine Dinucleotide) And Sulfate
Anion
pdb|2XF8|L Chain L, Structure Of The D-Erythrose-4-Phosphate Dehydrogenase
From E.Coli In Complex With A Nad Cofactor Analog (3-
Chloroacetyl Adenine Pyridine Dinucleotide) And Sulfate
Anion
pdb|2XF8|M Chain M, Structure Of The D-Erythrose-4-Phosphate Dehydrogenase
From E.Coli In Complex With A Nad Cofactor Analog (3-
Chloroacetyl Adenine Pyridine Dinucleotide) And Sulfate
Anion
pdb|2XF8|N Chain N, Structure Of The D-Erythrose-4-Phosphate Dehydrogenase
From E.Coli In Complex With A Nad Cofactor Analog (3-
Chloroacetyl Adenine Pyridine Dinucleotide) And Sulfate
Anion
pdb|2XF8|O Chain O, Structure Of The D-Erythrose-4-Phosphate Dehydrogenase
From E.Coli In Complex With A Nad Cofactor Analog (3-
Chloroacetyl Adenine Pyridine Dinucleotide) And Sulfate
Anion
pdb|2XF8|P Chain P, Structure Of The D-Erythrose-4-Phosphate Dehydrogenase
From E.Coli In Complex With A Nad Cofactor Analog (3-
Chloroacetyl Adenine Pyridine Dinucleotide) And Sulfate
Anion
Length = 338
Score = 29.3 bits (64), Expect = 9.3, Method: Compositional matrix adjust.
Identities = 40/193 (20%), Positives = 73/193 (37%), Gaps = 45/193 (23%)
Query: 75 VRSLVDSGQYAEATAASVKLFGHPADVYQLLGDIELEFDDSHLKYAEETY--RRELDLNT 132
VR+L +SG+ AE T ++ A + LL ++D SH ++A E R +L +
Sbjct: 17 VRALYESGRRAEITVVAINELADAAGMAHLL-----KYDTSHGRFAWEVRQERDQLFVGD 71
Query: 133 ATARVKYS----------------------VGNVEFTREHFSSNPDQVIVTKISGSE-SG 169
RV + G+ E H ++ +V+ + ++
Sbjct: 72 DAIRVLHERSLQSLPWRELGVDVVLDCTGVYGSREHGEAHIAAGAKKVLFSHPGSNDLDA 131
Query: 170 SLSFNVSLDSLLDNHSYVNGNNQIIMEGRCPGKRIPPKANANDDPKGIQFSAILEIKISD 229
++ + V+ D L H +I+ C I P DD GI+ + I
Sbjct: 132 TVVYGVNQDQLRAEH-------RIVSNASCTTNCIIPVIKLLDDAYGIESGTVTTIH--- 181
Query: 230 DRGTISALEDKKL 242
SA+ D+++
Sbjct: 182 -----SAMHDQQV 189
>pdb|2X5J|O Chain O, Crystal Structure Of The Apoform Of The
D-Erythrose-4-Phosphate Dehydrogenase From E. Coli
pdb|2X5J|P Chain P, Crystal Structure Of The Apoform Of The
D-Erythrose-4-Phosphate Dehydrogenase From E. Coli
pdb|2X5J|Q Chain Q, Crystal Structure Of The Apoform Of The
D-Erythrose-4-Phosphate Dehydrogenase From E. Coli
pdb|2X5J|R Chain R, Crystal Structure Of The Apoform Of The
D-Erythrose-4-Phosphate Dehydrogenase From E. Coli
Length = 339
Score = 29.3 bits (64), Expect = 9.3, Method: Compositional matrix adjust.
Identities = 40/193 (20%), Positives = 73/193 (37%), Gaps = 45/193 (23%)
Query: 75 VRSLVDSGQYAEATAASVKLFGHPADVYQLLGDIELEFDDSHLKYAEETY--RRELDLNT 132
VR+L +SG+ AE T ++ A + LL ++D SH ++A E R +L +
Sbjct: 18 VRALYESGRRAEITVVAINELADAAGMAHLL-----KYDTSHGRFAWEVRQERDQLFVGD 72
Query: 133 ATARVKYS----------------------VGNVEFTREHFSSNPDQVIVTKISGSE-SG 169
RV + G+ E H ++ +V+ + ++
Sbjct: 73 DAIRVLHERSLQSLPWRELGVDVVLDCTGVYGSREHGEAHIAAGAKKVLFSHPGSNDLDA 132
Query: 170 SLSFNVSLDSLLDNHSYVNGNNQIIMEGRCPGKRIPPKANANDDPKGIQFSAILEIKISD 229
++ + V+ D L H +I+ C I P DD GI+ + I
Sbjct: 133 TVVYGVNQDQLRAEH-------RIVSNASCTTNCIIPVIKLLDDAYGIESGTVTTIH--- 182
Query: 230 DRGTISALEDKKL 242
SA+ D+++
Sbjct: 183 -----SAMHDQQV 190
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.316 0.133 0.407
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 26,526,777
Number of Sequences: 62578
Number of extensions: 1168432
Number of successful extensions: 3249
Number of sequences better than 100.0: 24
Number of HSP's better than 100.0 without gapping: 9
Number of HSP's successfully gapped in prelim test: 15
Number of HSP's that attempted gapping in prelim test: 3205
Number of HSP's gapped (non-prelim): 24
length of query: 810
length of database: 14,973,337
effective HSP length: 107
effective length of query: 703
effective length of database: 8,277,491
effective search space: 5819076173
effective search space used: 5819076173
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 56 (26.2 bits)