Your job contains 1 sequence.
>003572
MAHVVVLQAKYSPLTQPAVHYLPLKPQSQCSNSFRSIRIGICFSHLTIQAQLGTTRTKRK
VKPSFFEQIRHKWSHKVISPREKFPWQEEEEEEEEVQNEPETDVESRVRSEPFSSALPNR
FVSAPWIHGTDSKEIKFDSPQTKITTKKEDIGDDGLLGSFEKTVVHSAVKEKTVIELDKE
GDYNKELKTDEVKIDANPIELSKDRHREVGSLNQKQIKGYHEVDDPSVLPWKRNTDRRRR
SNTELAEKMIPEHELQRLRNISLRMLERTKVGSAGITQALVDSIHEKWKLDEVVKLKFEE
PHSLQMKRTHEILERRTGGLVIWRSGSSVVLFRGMAYKLPCVQSFTKHNHTQQTQDVTNE
VMRNVGEHPPRSAMESYVPDSANNLENLSKEELMDLCELNYLLDELGPRFKDWPGREPLP
VDADLLPPVVPDYKPPLRLLPYGIKPGLRDCETTEFRRLARKTPPHFALGRNRELQGLAK
AMVKLWEKSAIAKIAIKRDVMNTRNERMAEELKKLTGGTLLCRNKDYIVFYRGNDFLPPV
VTDAVKERSKLTDIRQDEEERARHVASALIELKAKGFVGSLVAGTLAETLAATSRWGRQP
SYEDVEKMMRDSTLSRHASLLRYLEQKLALAKRKLKMADKALAKVQESLDPAELPSDLET
ITNEERFLLRKMGLSMKPYLLLGRRGIYDGTIENMHLHWKYRELVKIIVKGKSFAQVKQI
AISLEAESGGVLVSLDKTPKGIAIIVYRGKNYVRPLKLRPQNLLTRRQALARSVELQRRE
GLKHHILDLQERIELVKSELEEIEGGKTMT
BLASTP 2.0MP-WashU [04-May-2006] [linux26-i686-ILP32F64 2006-05-09T11:47:08]
Copyright (C) 1996-2006 Washington University, Saint Louis, Missouri USA.
All Rights Reserved.
Reference: Gish, W. (1996-2006) http://blast.wustl.edu
Query= 003572
(810 letters)
Database: go_20130330-seqdb.fasta
368,745 sequences; 169,044,731 total letters.
Searching....10....20....30....40....50....60....70....80....90....100% done
Smallest
Sum
High Probability
Sequences producing High-scoring Segment Pairs: Score P(N) N
TAIR|locus:2094558 - symbol:CFM3A "CRM family member 3A" ... 1344 2.8e-137 1
TAIR|locus:2094997 - symbol:EMB1865 "embryo defective 186... 1127 2.8e-114 1
TAIR|locus:2096662 - symbol:CFM2 "CRM family member 2" sp... 1111 1.4e-112 1
TAIR|locus:2181372 - symbol:CRS1 "ortholog of maize chlor... 691 1.0e-84 2
TAIR|locus:2094438 - symbol:LOH1 "LAG One Homologue 1" sp... 272 9.9e-21 1
TAIR|locus:2056558 - symbol:AT2G28480 species:3702 "Arabi... 258 9.3e-20 1
TAIR|locus:2123276 - symbol:AT4G13070 species:3702 "Arabi... 246 7.4e-19 1
TAIR|locus:2091458 - symbol:AT3G27550 species:3702 "Arabi... 228 1.4e-15 2
TAIR|locus:2061604 - symbol:CAF1 species:3702 "Arabidopsi... 147 1.6e-11 2
TAIR|locus:2028100 - symbol:CAF2 species:3702 "Arabidopsi... 125 1.4e-08 2
TAIR|locus:2126694 - symbol:AT4G31010 species:3702 "Arabi... 107 1.4e-07 2
TAIR|locus:2160195 - symbol:AT5G54890 species:3702 "Arabi... 121 5.3e-06 2
>TAIR|locus:2094558 [details] [associations]
symbol:CFM3A "CRM family member 3A" species:3702
"Arabidopsis thaliana" [GO:0003723 "RNA binding" evidence=IEA]
[GO:0009507 "chloroplast" evidence=ISM;IDA] [GO:0000373 "Group II
intron splicing" evidence=IMP] [GO:0048316 "seed development"
evidence=IGI] InterPro:IPR001890 Pfam:PF01985 PROSITE:PS51295
SMART:SM01103 GO:GO:0009507 EMBL:CP002686 GO:GO:0003723
GO:GO:0048316 Gene3D:3.30.110.60 SUPFAM:SSF75471 GO:GO:0000373
IPI:IPI00537962 RefSeq:NP_188947.2 UniGene:At.6125 UniGene:At.71222
ProteinModelPortal:F4J2U9 SMR:F4J2U9 PRIDE:F4J2U9
EnsemblPlants:AT3G23070.1 GeneID:821881 KEGG:ath:AT3G23070
OMA:VEILRHE Uniprot:F4J2U9
Length = 881
Score = 1344 (478.2 bits), Expect = 2.8e-137, P = 2.8e-137
Identities = 277/577 (48%), Positives = 381/577 (66%)
Query: 238 RRRSNTELAEKMIPEHELQRLRNISLRMLERTKVGSAGITQALVDSIHEKWKLDEVVKLK 297
++ + LAE +PE EL+RLRN++ R + ++ G+TQ VD+I EKWK E+V+LK
Sbjct: 209 KKENRYSLAEMTLPESELRRLRNLTFRTASKMRIRGGGVTQVAVDAIKEKWKSAEIVRLK 268
Query: 298 FEEPHSLQMKRTHEILERRTGGLVIWRSGSSVVLFRGMAYKLPCVQSFTKHNHTQQTQDV 357
E +L M++ HEILE++TGGLVIWRSG+S+ L+RG++Y+LP K N ++ +
Sbjct: 269 IEGASALNMRKMHEILEKKTGGLVIWRSGTSISLYRGVSYELPS----GKWNKQRREETP 324
Query: 358 TNEVMRNVGEHPP---RSAMESYVPDSANNLENLSKEELMDLC-----ELNYLLDELGPR 409
V+ N E +S + ++P ++ K++ EL+ LLD+LGPR
Sbjct: 325 PEAVIENHDETTTMVDKSDEKVHLPQLEQETTSVEKKDQTSPVVEYEDELDELLDDLGPR 384
Query: 410 FKDWPGREXXXXXXXXXXXXXXXYKPPLRLLPYGIKPGLRDCETTEFRRLARKTPPHFAL 469
F DWPG Y+PP R+LPYG++ L E T RRLAR PPHFAL
Sbjct: 385 FMDWPGDNPLPVDADLLPGAIPDYEPPFRVLPYGVRSSLGPKEATALRRLARSIPPHFAL 444
Query: 470 GRNRELQGLAKAMVKLWEKSAIAKIAIKRDVMNTRNERMAEELKKLTGGTLLCRNKDYIV 529
GR+R+LQGLA AMV+LWEKS +AKIAIKR V +T +ERMAE+LKKLTGG +L RNKD++V
Sbjct: 445 GRSRQLQGLATAMVRLWEKSMLAKIAIKRGVQSTTSERMAEDLKKLTGGIMLSRNKDFLV 504
Query: 530 FYRGNDFLPPVVTDAVKERSKLTDIRQDEEERARHVASALIELKAKGFVGSLV-AGTLAE 588
FYRG +FL V DA+ E+ + QDEEE+AR S+ + + + LV AGTL E
Sbjct: 505 FYRGKNFLSREVADALVEQERFVRTLQDEEEQARLRGSSALIVPSTEPANKLVSAGTLGE 564
Query: 589 TLAATSRWGRQPSYED-VEKMMRDSTLSRHASLLRYXXXXXXXXXXXXXXXXXXXXXVQE 647
TL AT +WG+ +D +++ ++ + RH +L+R V+
Sbjct: 565 TLDATGKWGKNLDDDDHSDEVKQEVEILRHENLVRKLERKLAFAERKLLKAERGLAKVEV 624
Query: 648 SLDPAELPSDLETITNEERFLLRKMGLSMKPYLLLGRRGIYDGTIENMHLHWKYRELVKI 707
L PAE D E+IT+EERF+ RK+GL MK +LLLGRRG++DGT+ENMHLHWKYRELVKI
Sbjct: 625 CLKPAEQREDPESITDEERFMFRKLGLKMKAFLLLGRRGVFDGTVENMHLHWKYRELVKI 684
Query: 708 IVKGKSFAQVKQIAISLEAESGGVLVSLDKTPKGIAIIVYRGKNYVRPLKLRPQNLLTRR 767
IVK K+F VK++A++LEAESGG+LVS+DK KG AIIVYRG++Y RP LRP+NLLT+R
Sbjct: 685 IVKAKTFDGVKKVALALEAESGGILVSIDKVTKGYAIIVYRGQDYKRPTMLRPKNLLTKR 744
Query: 768 QALARSVELQRREGLKHHILDLQERIELVKSELEEIE 804
+ALARS+ELQRREGL HI +Q + + +++E+E++E
Sbjct: 745 KALARSIELQRREGLLKHISTMQAKAKQLRAEIEQME 781
>TAIR|locus:2094997 [details] [associations]
symbol:EMB1865 "embryo defective 1865" species:3702
"Arabidopsis thaliana" [GO:0003723 "RNA binding" evidence=IEA]
[GO:0009507 "chloroplast" evidence=ISM;IDA] [GO:0009793 "embryo
development ending in seed dormancy" evidence=NAS] [GO:0009737
"response to abscisic acid stimulus" evidence=IDA] [GO:0006655
"phosphatidylglycerol biosynthetic process" evidence=RCA]
[GO:0009902 "chloroplast relocation" evidence=RCA] [GO:0010027
"thylakoid membrane organization" evidence=RCA] [GO:0016117
"carotenoid biosynthetic process" evidence=RCA] [GO:0019288
"isopentenyl diphosphate biosynthetic process,
mevalonate-independent pathway" evidence=RCA] [GO:0034660 "ncRNA
metabolic process" evidence=RCA] InterPro:IPR001890 Pfam:PF01985
PROSITE:PS51295 SMART:SM01103 GO:GO:0009737 GO:GO:0009507
EMBL:CP002686 GenomeReviews:BA000014_GR GO:GO:0003723 EMBL:AB026658
Gene3D:3.30.110.60 SUPFAM:SSF75471 HOGENOM:HOG000241574
EMBL:AY063908 IPI:IPI00520842 RefSeq:NP_188468.1 UniGene:At.20890
ProteinModelPortal:Q9LS51 SMR:Q9LS51 STRING:Q9LS51 PaxDb:Q9LS51
PRIDE:Q9LS51 EnsemblPlants:AT3G18390.1 GeneID:821368
KEGG:ath:AT3G18390 TAIR:At3g18390 eggNOG:NOG326934
InParanoid:Q9LS51 OMA:DMKTAHE PhylomeDB:Q9LS51
ProtClustDB:CLSN2684381 ArrayExpress:Q9LS51 Genevestigator:Q9LS51
Uniprot:Q9LS51
Length = 848
Score = 1127 (401.8 bits), Expect = 2.8e-114, P = 2.8e-114
Identities = 249/572 (43%), Positives = 349/572 (61%)
Query: 237 RRRRSNTELAEKMIPEHELQRLRNISLRMLERTKVGSAGITQALVDSIHEKWKLDEVVKL 296
+RR LAE + + EL+RLR + + R + AG+TQA+++ I++ W+ +E+V+L
Sbjct: 230 KRRARAPSLAELTVEDSELRRLRRDGMYLRVRINIPKAGLTQAVMEKIYDTWRKEELVRL 289
Query: 297 KFEEPHSLQMKRTHEILERRTGGLVIWRSGSSVVLFRGMAYKLPCVQS--FTKHNHTQQT 354
KF E + MK HEI+ERRTGG+VIWR+GS +V++RG+ YK P V S T
Sbjct: 290 KFHEVLARDMKTAHEIVERRTGGMVIWRAGSVMVVYRGLDYKGPPVISNQMAGPKETLFV 349
Query: 355 QDVTNEVMRNVGEHPPRSA---MESYVPDSANNLENLSKEELMDLCELNYLLDELGPRFK 411
DV++ +SA ++ + + EN+++EE+ E N LLD LGPRF+
Sbjct: 350 PDVSSAGDEATNAKDNQSAPLVIKDPIIKNPIRKENMTEEEV----EFNSLLDSLGPRFQ 405
Query: 412 DWPGREXXXXXXXXXXXXXXXYKPPLRLLPYGIKPGLRDCETTEFRRLARKTPPHFALGR 471
+W G YK P RLLP G++ L + E T R++ + P HFALGR
Sbjct: 406 EWWGTGVLPVDADLLPPTIPGYKTPFRLLPTGMRSNLTNAEMTNLRKIGKTLPCHFALGR 465
Query: 472 NRELQGLAKAMVKLWEKSAIAKIAIKRDVMNTRNERMAEELKKLTGGTLLCRNKDYIVFY 531
NR QGLA A++++WEKS IAKIA+KR + NT N+ MA+E+K LTGG LL RNK YIV Y
Sbjct: 466 NRNHQGLAAAILQIWEKSLIAKIAVKRGIQNTNNKLMADEVKTLTGGVLLLRNKYYIVIY 525
Query: 532 RGNDFLPPVVTDAVKERSKLTDIRQDEEERARHVASALIELKAKGFVGSLV---AGTLAE 588
RG DFLP V + ER +LT QD EER R+ E++A VG V AGTLAE
Sbjct: 526 RGKDFLPSSVAATLAERQELTKEIQDVEERVRNR-----EIEAVQPVGDKVPAEAGTLAE 580
Query: 589 TLAATSRWGRQPSYEDVEKMMRDSTLSRHASLLRYXXXXXXXXXXXXXXXXXXXXXVQES 648
A +RWG++ + + EKM+ +++ +A +++ ++ S
Sbjct: 581 FYEAQARWGKEITPDHREKMIEEASRVANARVVKRIQHKLNLAQSKFQRAEKLLSKIEAS 640
Query: 649 LDPAELPSDLETITNEERFLLRKMGLSMKPYLLLGRRGIYDGTIENMHLHWKYRELVKII 708
+ P D E I+ EER + RK+GL MK YL +G RG++DG IENMHLHWK+RELVK+I
Sbjct: 641 MIPNGPDYDQEVISEEERAMFRKVGLKMKAYLPIGIRGVFDGVIENMHLHWKHRELVKLI 700
Query: 709 VKGKSFAQVKQIAISLEAESGGVLVSLDKTPKGIAIIVYRGKNYVRPLKLRPQNLLTRRQ 768
K K+ A V++ A LE ESGGVLV+++K PKG A+I YRGKNY RP+ LRP+NLLT+ +
Sbjct: 701 SKQKNQAFVEETARLLEYESGGVLVAIEKVPKGFALIYYRGKNYRRPISLRPRNLLTKAK 760
Query: 769 ALARSVELQRREGLKHHILDLQERIELVKSEL 800
AL RS+ +QR E L HI +L+ IE ++S+L
Sbjct: 761 ALKRSIAMQRHEALSQHISELERTIEQMQSQL 792
>TAIR|locus:2096662 [details] [associations]
symbol:CFM2 "CRM family member 2" species:3702
"Arabidopsis thaliana" [GO:0003723 "RNA binding" evidence=IEA]
[GO:0009507 "chloroplast" evidence=ISM;RCA] [GO:0000372 "Group I
intron splicing" evidence=IMP] [GO:0000373 "Group II intron
splicing" evidence=IMP] InterPro:IPR001890 Pfam:PF01985
PROSITE:PS51295 SMART:SM01103 EMBL:CP002686 GO:GO:0003723
Gene3D:3.30.110.60 SUPFAM:SSF75471 GO:GO:0000373 GO:GO:0000372
EMBL:AY136347 EMBL:BT010594 IPI:IPI00518423 RefSeq:NP_186786.2
UniGene:At.28082 ProteinModelPortal:Q8L7C2 SMR:Q8L7C2 IntAct:Q8L7C2
STRING:Q8L7C2 PaxDb:Q8L7C2 PRIDE:Q8L7C2 EnsemblPlants:AT3G01370.1
GeneID:821288 KEGG:ath:AT3G01370 TAIR:At3g01370 eggNOG:NOG300241
InParanoid:Q8L7C2 OMA:ASMIKLW PhylomeDB:Q8L7C2
ProtClustDB:CLSN2690653 ArrayExpress:Q8L7C2 Genevestigator:Q8L7C2
Uniprot:Q8L7C2
Length = 1011
Score = 1111 (396.2 bits), Expect = 1.4e-112, P = 1.4e-112
Identities = 255/604 (42%), Positives = 344/604 (56%)
Query: 217 IKGYHEVDDPSVLPWKRNTDRRRRSNTE---LAEKMIPEHELQRLRNISLRMLERTKVGS 273
I YHE+ WK+ T+ R+ + LAE +P EL+RLR + +R+ ++ K+G
Sbjct: 134 ISRYHELKRV----WKKETEMERKKEEKVPSLAELTLPPAELRRLRTVGIRLTKKLKIGK 189
Query: 274 AGITQALVDSIHEKWKLDEVVKLKFEEPHSLQMKRTHEILERRTGGLVIWRSGSSVVLFR 333
AGIT+ +V+ IHE+W+ EVVK+ E+ + MKRTH++LE +TGGLVIWRSGS ++L+R
Sbjct: 190 AGITEGIVNGIHERWRTTEVVKIFCEDISRMNMKRTHDVLETKTGGLVIWRSGSKILLYR 249
Query: 334 GMAYKLPCVQSFTKHNHTQQTQDVTNEVMRNVGEHPPRSAMESYVPDSANNLEN--LSKE 391
G+ Y+ P S H + ++ V +S ES P N + L++
Sbjct: 250 GVNYQYPYFVSDRDLAH-EAASGASSMDQGVVDSREKQSIAESSAPSITNKMVKPMLTQG 308
Query: 392 -------------ELMDLCELNYLLDELGPRFKDWPGREXXXXXXXXXXXXXXXYKPPLR 438
E+ + E + LL+ LGPRF DW + Y+ P R
Sbjct: 309 VGSPDKVRFQLPGEVQLVEEADRLLEGLGPRFTDWWAYDPLPVDGDLLPAVVPDYRRPFR 368
Query: 439 LLPYGIKPGLRDCETTEFRRLARKTPPHFALGRNRELQGLAKAMVKLWEKSAIAKIAIKR 498
LLPYG+ P L D E T RRL R P HFALGRNR LQGLA A+VKLWEK +AKIA+KR
Sbjct: 369 LLPYGVSPKLTDDEMTTIRRLGRPLPCHFALGRNRNLQGLAVAIVKLWEKCELAKIAVKR 428
Query: 499 DVMNTRNERMAEELKKLTGGTLLCRNKDYIVFYRGNDFLPPVVTDAVKERSKLTDIRQDE 558
V NT +E MAEELK LTGGTL+ R+KD+IV YRG DFLP V+ A++ER + T I ++
Sbjct: 429 GVQNTNSELMAEELKWLTGGTLISRDKDFIVLYRGKDFLPSAVSSAIEERRRQTMIMENS 488
Query: 559 EERARHVASALIELKAKGFVGSLVAGTLAETLAATSRWGRQPSYEDVEKMMRDSTLSRHA 618
+ E+K + + E + ++ Q + +M S A
Sbjct: 489 SVHGNKLTENEEEIKPRA---------VKEDIELEAK--DQKDHIQTHQMKSRQRNSPEA 537
Query: 619 SLLRYXXXXXXXXXXXXXXXXXXXXXVQESLDPAELPSDLETITNEERFLLRKMGLSMKP 678
+L ++ P D E ITN+E+++LRK+GL MKP
Sbjct: 538 -ILEKTSMKLSMALEKKANAEKVLADLENRESPQLSDIDKEGITNDEKYMLRKIGLKMKP 596
Query: 679 YLLLGRRGIYDGTIENMHLHWKYRELVKIIVKGKSFAQVKQIAISLEAESGGVLVSLDKT 738
+LLLGRRG++DGTIENMHLHWKYRELVKII S ++A LEAESGG+LV+++
Sbjct: 597 FLLLGRRGVFDGTIENMHLHWKYRELVKIICNEYSIEAAHKVAEILEAESGGILVAVEMV 656
Query: 739 PKGIAIIVYRGKNYVRPLKLRPQNLLTRRQALARSVELQRREGLKHHILDLQERIELVKS 798
KG AIIVYRGKNY RP LRPQ LL++R+AL RSVE QRR+ LK H+L L IE +
Sbjct: 657 SKGYAIIVYRGKNYERPQCLRPQTLLSKREALKRSVEAQRRKSLKLHVLKLSNNIEELNR 716
Query: 799 ELEE 802
+L E
Sbjct: 717 QLVE 720
Score = 142 (55.0 bits), Expect = 3.5e-13, Sum P(2) = 3.5e-13
Identities = 59/244 (24%), Positives = 116/244 (47%)
Query: 161 EKTVVHSAVKEKTVIELDKEGDYNKELKTDEVKIDANPIELSKDRHREVGSLNQKQIKGY 220
E+ + AVKE IEL+ + D ++T ++K S+ R+ L + +K
Sbjct: 499 EEEIKPRAVKED--IELEAK-DQKDHIQTHQMK--------SRQRNSPEAILEKTSMKLS 547
Query: 221 HEVDDPSVLPWKRNTDRRRRSNTELAE---KMIPEHELQRLRNISLRMLERTKVGSAGIT 277
++ + K D R + +L++ + I E LR I L+M +G G+
Sbjct: 548 MALEKKANAE-KVLADLENRESPQLSDIDKEGITNDEKYMLRKIGLKMKPFLLLGRRGVF 606
Query: 278 QALVDSIHEKWKLDEVVKLKFEEPHSLQMK-RTHEILERRTGGLVIW----RSGSSVVLF 332
++++H WK E+VK+ E +S++ + EILE +GG+++ G +++++
Sbjct: 607 DGTIENMHLHWKYRELVKIICNE-YSIEAAHKVAEILEAESGGILVAVEMVSKGYAIIVY 665
Query: 333 RGMAYKLP-CVQSFTKHNHTQQTQDVTNEVMRNVGEHPPRSAMESYVPDSANNLENLSKE 391
RG Y+ P C++ QT E ++ E R +++ +V +NN+E L+++
Sbjct: 666 RGKNYERPQCLRP--------QTLLSKREALKRSVEAQRRKSLKLHVLKLSNNIEELNRQ 717
Query: 392 ELMD 395
+ D
Sbjct: 718 LVED 721
Score = 122 (48.0 bits), Expect = 3.5e-13, Sum P(2) = 3.5e-13
Identities = 32/106 (30%), Positives = 55/106 (51%)
Query: 661 ITNEERFLLRKMGLSMK--PYLLLGRRGIYDGTIENMHLHWKYRELVKIIVKGKSFA-QV 717
++N ER +LRK L MK P +GR + G + +H++ L + VKG++ V
Sbjct: 875 LSNRERLILRKQALKMKKRPPFAVGRSNVVTGLARTLKMHFQKNPLAIVNVKGRANGTSV 934
Query: 718 KQIAISLEAESGGVLVSLDKTPKGIAIIVYRGKNYVRPLK-LRPQN 762
+++ L+ E+G +LVS + + +I+YRG +K P N
Sbjct: 935 QEVIAKLKEETGALLVSQEPSK----VILYRGWGAEEEMKSFYPNN 976
Score = 111 (44.1 bits), Expect = 4.9e-12, Sum P(2) = 4.9e-12
Identities = 39/139 (28%), Positives = 66/139 (47%)
Query: 443 GIKPGLRDCETTEFRRLA---RKTPPHFALGRNRELQGLAKAMVKLWEKSAIAKIAIKRD 499
G+ L + E R+ A +K PP FA+GR+ + GLA+ + ++K+ +A + +K
Sbjct: 870 GLVTDLSNRERLILRKQALKMKKRPP-FAVGRSNVVTGLARTLKMHFQKNPLAIVNVKGR 928
Query: 500 VMNTRNERMAEELKKLTGGTLLCRNKDYIVFYRG-------NDFLPPVVTDAVKERSKLT 552
T + + +LK+ TG L+ + ++ YRG F P + VK L
Sbjct: 929 ANGTSVQEVIAKLKEETGALLVSQEPSKVILYRGWGAEEEMKSFYP---NNNVKSSINLP 985
Query: 553 DIRQDEEERARHVASALIE 571
R ++ HV+ ALIE
Sbjct: 986 STRSFVDDPP-HVSPALIE 1003
>TAIR|locus:2181372 [details] [associations]
symbol:CRS1 "ortholog of maize chloroplast splicing
factor CRS1" species:3702 "Arabidopsis thaliana" [GO:0003723 "RNA
binding" evidence=IEA] [GO:0009507 "chloroplast" evidence=ISM]
[GO:0000373 "Group II intron splicing" evidence=IDA]
InterPro:IPR001890 Pfam:PF01985 PROSITE:PS51295 SMART:SM01103
EMBL:CP002688 GenomeReviews:BA000015_GR GO:GO:0009570 GO:GO:0006417
GO:GO:0006397 GO:GO:0003723 GO:GO:0030529 Gene3D:3.30.110.60
SUPFAM:SSF75471 GO:GO:0000373 EMBL:AL391148 IPI:IPI00521200
PIR:T51488 RefSeq:NP_197122.2 UniGene:At.50459 UniGene:At.54863
ProteinModelPortal:Q9LF10 SMR:Q9LF10 PaxDb:Q9LF10 PRIDE:Q9LF10
GeneID:831476 KEGG:ath:AT5G16180 TAIR:At5g16180 eggNOG:NOG322716
HOGENOM:HOG000241574 InParanoid:Q9LF10 OMA:KIERSNQ
ArrayExpress:Q9LF10 Genevestigator:Q9LF10 Uniprot:Q9LF10
Length = 720
Score = 691 (248.3 bits), Expect = 1.0e-84, Sum P(2) = 1.0e-84
Identities = 166/410 (40%), Positives = 220/410 (53%)
Query: 398 ELNYLLDELGPRFKDWPGREXXXXXXXXXXXXXXXYKPPLRLLPYGIKPGLRDCETTEFR 457
E + LLD LGPR+ DW R Y P R P + L D E T R
Sbjct: 311 EADRLLDGLGPRYMDWWMRRPFPVDADLLPEVVNGYMTPSRRCPPNTRAKLTDEELTYLR 370
Query: 458 RLARKTPPHFALGRNRELQGLAKAMVKLWEKSAIAKIAIKRDVMNTRNERMAEELKKLTG 517
+A+ P HF LGRN LQGLA A+VKLWEK IAKIAIK +NT NE MA+EL+ LTG
Sbjct: 371 NIAQPLPFHFVLGRNYGLQGLASAIVKLWEKCIIAKIAIKWGALNTNNEEMADELRYLTG 430
Query: 518 GTLLCRNKDYIVFYRGNDFLPPVVTDAVKERSKLTDIRQDEEERARHVASALIELKAKG- 576
G L+ RNK IV YRG DFL V D V++R +L Q EE R L+E+ G
Sbjct: 431 GVLILRNKYLIVLYRGKDFLSDEVADLVEDRERLLSRYQHFEETKRESDIELLEVVTNGK 490
Query: 577 -FVGSLVAGTLAETLAATSRWGRQPSYEDVEKMMRDSTLSRHASLLRYXXXXXXXXXXXX 635
+ +GTL E ++G D + ++ +R L+
Sbjct: 491 QLKETNKSGTLLEFQELQRKFGEM----DPRNLETEAEKARLEKELKSQEHKLSILKSKI 546
Query: 636 XXXXXXXXXVQESLDPAELPSDLETITNEERFLLRKMGLSMKPYLLLGRRGIYDGTIENM 695
+ P+E D+E +TNEER LR++GL M L+LGRRG++ G +E +
Sbjct: 547 EKSNMELFKLNSLWKPSEGDDDIEILTNEERECLRRIGLKMNSSLVLGRRGVFFGVMEGL 606
Query: 696 HLHWKYRELVKIIVKGKSFAQVKQIAISLEAESGGVLVSLDKTPKGIAIIVYRGKNYVRP 755
H HWK+RE+ K+I K F++V A +LE ES GVL+S++K +G AI++YRGKNY RP
Sbjct: 607 HQHWKHREVAKVITMQKLFSRVVYTAKALETESNGVLISIEKLKEGHAILIYRGKNYKRP 666
Query: 756 L-KLRPQNLLTRRQALARSVELQRREGLKHHILDLQERIELVKSELEEIE 804
KL QNLLT+R+AL RSV +QR LK + IE +K L ++
Sbjct: 667 SSKLMAQNLLTKRKALQRSVVMQRLGSLKFFAYQRERAIEDLKVSLVNLQ 716
Score = 176 (67.0 bits), Expect = 1.0e-84, Sum P(2) = 1.0e-84
Identities = 40/112 (35%), Positives = 64/112 (57%)
Query: 229 LPWKRNTDR--RRRSNTE----LAEKMIPEHELQRLRNISLRMLERTKVGSAGITQALVD 282
+PW+R +R RR E AE ++ E L RLR + +M + V AG+T+ +V+
Sbjct: 180 MPWEREEERFILRRMKKESVPTTAELILDEGLLNRLRREASKMRKWVNVRKAGVTELVVN 239
Query: 283 SIHEKWKLDEVVKLKFEEPHSLQMKRTHEILERRTGGLVIWRSGSSVVLFRG 334
I WKL+E+ ++F+ P M+R EI+E +TGGLV+ +V++RG
Sbjct: 240 KIKSMWKLNELAMVRFDVPLCRNMERAQEIIEMKTGGLVVLSKKEFLVVYRG 291
Score = 37 (18.1 bits), Expect = 4.7e-70, Sum P(2) = 4.7e-70
Identities = 31/141 (21%), Positives = 52/141 (36%)
Query: 136 KFDSPQTKITTKKEDIGDDGLLGSFEKTVVHS-AVKEKTVIELDKEGDYNKELKTDEVKI 194
K D T+ +D+ + LG E+ V K E ++E + +K + V
Sbjct: 142 KLDEDSDSEETQMDDLSEFEYLGRIEEKVESKDRFGGKMPWEREEERFILRRMKKESVPT 201
Query: 195 DANPI--ELSKDRHREVGSLNQKQIK----GYHEVDDPSVLP-WKRNTDRRRRSNTELAE 247
A I E +R R S +K + G E+ + WK N R + L
Sbjct: 202 TAELILDEGLLNRLRREASKMRKWVNVRKAGVTELVVNKIKSMWKLNELAMVRFDVPLCR 261
Query: 248 KMIPEHELQRLRNISLRMLER 268
M E+ ++ L +L +
Sbjct: 262 NMERAQEIIEMKTGGLVVLSK 282
>TAIR|locus:2094438 [details] [associations]
symbol:LOH1 "LAG One Homologue 1" species:3702
"Arabidopsis thaliana" [GO:0003723 "RNA binding" evidence=IEA]
[GO:0009507 "chloroplast" evidence=ISM] [GO:0042761 "very
long-chain fatty acid biosynthetic process" evidence=IGI]
[GO:0050291 "sphingosine N-acyltransferase activity" evidence=IGI]
InterPro:IPR001890 Pfam:PF01985 PROSITE:PS51295 SMART:SM01103
GO:GO:0009507 EMBL:CP002686 GenomeReviews:BA000014_GR GO:GO:0003723
EMBL:AB025639 GO:GO:0042761 Gene3D:3.30.110.60 SUPFAM:SSF75471
GO:GO:0050291 KO:K01148 EMBL:AK176804 IPI:IPI00542084
RefSeq:NP_189171.2 UniGene:At.37388 ProteinModelPortal:Q67XL4
SMR:Q67XL4 PaxDb:Q67XL4 PRIDE:Q67XL4 EnsemblPlants:AT3G25440.1
GeneID:822128 KEGG:ath:AT3G25440 TAIR:At3g25440 eggNOG:NOG254408
HOGENOM:HOG000240887 InParanoid:Q67XL4 OMA:RRYIPRL PhylomeDB:Q67XL4
ProtClustDB:CLSN2681576 Genevestigator:Q67XL4 Uniprot:Q67XL4
Length = 444
Score = 272 (100.8 bits), Expect = 9.9e-21, P = 9.9e-21
Identities = 59/157 (37%), Positives = 97/157 (61%)
Query: 647 ESLDPAELPSDLETITNEERFLLRKMGLSMKPYLLLGRRGIYDGTIENMHLHWKYRELVK 706
E + AE D E +T EE F KMGL K Y+ +GRRGIY G I NMHLHWK + ++
Sbjct: 163 EPSESAETTHDPEILTPEEHFYYLKMGLKCKNYVPVGRRGIYQGVILNMHLHWKKHQTLQ 222
Query: 707 IIVKGKSFAQVKQIAISLEAESGGVLVSLDKTPKGIAIIVYRGKNYVRPLK--LRPQNLL 764
+++K + +VK+IA+ L +GG+++ + + G II+YRGKNYV+P + P+ L
Sbjct: 223 VVIKTFTPDEVKEIAVELARLTGGIVLDVHE---GNTIIMYRGKNYVQPPTEIMSPRITL 279
Query: 765 TRRQALARSVELQRREGLKHHILDLQERIELVKSELE 801
R++AL +S ++ +I L++ ++L++++ E
Sbjct: 280 PRKKALDKSKCRDALRAVRKYIPRLEQELQLLQAQAE 316
>TAIR|locus:2056558 [details] [associations]
symbol:AT2G28480 species:3702 "Arabidopsis thaliana"
[GO:0003723 "RNA binding" evidence=IEA] [GO:0008150
"biological_process" evidence=ND] [GO:0009507 "chloroplast"
evidence=ISM] InterPro:IPR001890 Pfam:PF01985 PROSITE:PS51295
SMART:SM01103 EMBL:CP002685 GenomeReviews:CT485783_GR GO:GO:0003723
EMBL:AC006587 Gene3D:3.30.110.60 SUPFAM:SSF75471
HOGENOM:HOG000241798 EMBL:BT011753 EMBL:AK226713 IPI:IPI00526248
PIR:D84685 RefSeq:NP_180415.1 UniGene:At.50106
ProteinModelPortal:Q9SK10 SMR:Q9SK10 EnsemblPlants:AT2G28480.1
GeneID:817396 KEGG:ath:AT2G28480 TAIR:At2g28480 eggNOG:NOG245924
InParanoid:Q9SK10 OMA:ANRKDPR PhylomeDB:Q9SK10
ProtClustDB:CLSN2913133 Genevestigator:Q9SK10 Uniprot:Q9SK10
Length = 372
Score = 258 (95.9 bits), Expect = 9.3e-20, P = 9.3e-20
Identities = 59/137 (43%), Positives = 81/137 (59%)
Query: 661 ITNEERFLLRKMGLSMKPYLLLGRRGIYDGTIENMHLHWKYRELVKIIVKGKSFAQVKQI 720
IT EERF L+KMG Y+ +GRRG++ G I NMHLHWK E VK+I QV+Q
Sbjct: 164 ITGEERFYLKKMGQKRSNYVPIGRRGVFGGVILNMHLHWKKHETVKVICNNSKPGQVQQY 223
Query: 721 AISLEAESGGVLVSL--DKTPKGIAIIVYRGKNYVRPLKLRPQNLLTRRQALARSVELQR 778
A L SGGV V++ D T II YRGK YV+P + P + L++++A +S Q
Sbjct: 224 AEELAKLSGGVPVNIIGDDT-----IIFYRGKGYVQPQVMSPIDTLSKKRAYEKSKYEQS 278
Query: 779 REGLKHHILDLQERIEL 795
E ++H I ++ +EL
Sbjct: 279 LESVRHFIAIAEKELEL 295
>TAIR|locus:2123276 [details] [associations]
symbol:AT4G13070 species:3702 "Arabidopsis thaliana"
[GO:0003723 "RNA binding" evidence=IEA] [GO:0008150
"biological_process" evidence=ND] [GO:0009507 "chloroplast"
evidence=ISM] InterPro:IPR001890 Pfam:PF01985 PROSITE:PS51295
SMART:SM01103 EMBL:CP002687 GenomeReviews:CT486007_GR GO:GO:0003723
Gene3D:3.30.110.60 SUPFAM:SSF75471 EMBL:BT022043 EMBL:BT029203
EMBL:AK175251 EMBL:AK176471 EMBL:AK176848 IPI:IPI00516587
RefSeq:NP_193043.2 UniGene:At.43316 ProteinModelPortal:Q67YJ7
SMR:Q67YJ7 EnsemblPlants:AT4G13070.1 GeneID:826921
KEGG:ath:AT4G13070 TAIR:At4g13070 eggNOG:NOG314366
HOGENOM:HOG000241798 InParanoid:Q67YJ7 OMA:NELRFYR PhylomeDB:Q67YJ7
ProtClustDB:CLSN2918582 Genevestigator:Q67YJ7 Uniprot:Q67YJ7
Length = 343
Score = 246 (91.7 bits), Expect = 7.4e-19, P = 7.4e-19
Identities = 60/153 (39%), Positives = 90/153 (58%)
Query: 651 PAELPSDLETITNEERFLLRKMGLSMKPYLLLGRRGIYDGTIENMHLHWKYRELVKIIVK 710
PAE P D E++T EE+ L++ G K ++L+GRRG++ G + N+HLHWK E VK+I K
Sbjct: 173 PAE-PYDPESLTEEEQHYLKRTGEKRKNFVLVGRRGVFGGVVLNLHLHWKKHETVKVICK 231
Query: 711 G-KSFAQVKQIAISLEAESGGVLVSLDKTPKGIAIIVYRGKNYVRPLKLRPQNLLTRRQA 769
QV + A L S G+++ D P I++YRGKNYVRP + P + L++ +A
Sbjct: 232 PCNKPGQVHEYAEELARLSKGIVI--DVKPNN-TIVLYRGKNYVRPEVMSPVDTLSKDKA 288
Query: 770 LARSVELQRREGLKHHILDLQERIELVKSELEE 802
L + + + L+H E IE ++ ELEE
Sbjct: 289 LEK---YRYEQSLEH----TSEFIEKLEKELEE 314
>TAIR|locus:2091458 [details] [associations]
symbol:AT3G27550 species:3702 "Arabidopsis thaliana"
[GO:0003723 "RNA binding" evidence=IEA] [GO:0009507 "chloroplast"
evidence=ISM] InterPro:IPR001890 Pfam:PF01985 PROSITE:PS51295
SMART:SM01103 EMBL:CP002686 GenomeReviews:BA000014_GR GO:GO:0003723
Gene3D:3.30.110.60 SUPFAM:SSF75471 EMBL:AB025626 IPI:IPI00525575
RefSeq:NP_189392.1 UniGene:At.37034 ProteinModelPortal:Q9LT57
SMR:Q9LT57 EnsemblPlants:AT3G27550.1 GeneID:822377
KEGG:ath:AT3G27550 TAIR:At3g27550 eggNOG:NOG248894
HOGENOM:HOG000241218 InParanoid:Q9LT57 OMA:RMRKESG PhylomeDB:Q9LT57
ProtClustDB:CLSN2685015 Genevestigator:Q9LT57 Uniprot:Q9LT57
Length = 491
Score = 228 (85.3 bits), Expect = 1.4e-15, Sum P(2) = 1.4e-15
Identities = 50/147 (34%), Positives = 86/147 (58%)
Query: 650 DPAELPS---DLETITNEERFLLRKMGLSMKPYLLLGRRGIYDGTIENMHLHWKYRELVK 706
D ELPS D E T+E+ +K+G K Y+ +G RG++ G ++NMH+HWK+ E V+
Sbjct: 78 DLPELPSPVHDPELFTSEQVQAFKKIGFKNKNYVPVGVRGVFGGVVQNMHMHWKFHETVQ 137
Query: 707 IIVKGKSFAQVKQIAISLEAESGGVLVSLDKTPKGIAIIVYRGKNYVRPLKLRPQNLLTR 766
+ ++K++A + SGGV++++ II++RG+NY +P L P N LT+
Sbjct: 138 VCCDNFPKEKIKEMASMIARLSGGVVINIHNVK---TIIMFRGRNYRQPKNLIPVNTLTK 194
Query: 767 RQALARSVELQRREGLKHHILDLQERI 793
R+AL ++ Q E K +I ++++
Sbjct: 195 RKALFKARFEQALESQKLNIKKTEQQL 221
Score = 45 (20.9 bits), Expect = 1.4e-15, Sum P(2) = 1.4e-15
Identities = 18/56 (32%), Positives = 31/56 (55%)
Query: 172 KTVIELDKEGDYNKELKTDEVKIDANPIELSKDRHREVGSLNQKQIKGYHEVDDPS 227
KT+ E+ + K+L TDE ++ N ++ +K ++V L QK +K Y + PS
Sbjct: 34 KTLREIRRAKKLKKKLMTDEERLIYN-LKRAK---KKVALLLQK-LKKYDLPELPS 84
>TAIR|locus:2061604 [details] [associations]
symbol:CAF1 species:3702 "Arabidopsis thaliana"
[GO:0003723 "RNA binding" evidence=IEA] [GO:0009507 "chloroplast"
evidence=ISM] [GO:0000373 "Group II intron splicing" evidence=IDA]
[GO:0006364 "rRNA processing" evidence=RCA] [GO:0006399 "tRNA
metabolic process" evidence=RCA] [GO:0009658 "chloroplast
organization" evidence=RCA] InterPro:IPR001890 Pfam:PF01985
PROSITE:PS51295 SMART:SM01103 GO:GO:0009570 EMBL:CP002685
GenomeReviews:CT485783_GR GO:GO:0006397 GO:GO:0003723 GO:GO:0030529
EMBL:AC006081 HOGENOM:HOG000242611 ProtClustDB:CLSN2686958
Gene3D:3.30.110.60 SUPFAM:SSF75471 EMBL:AY045882 EMBL:BT004337
IPI:IPI00534960 PIR:A84584 RefSeq:NP_565462.1 UniGene:At.13487
ProteinModelPortal:Q9SL79 SMR:Q9SL79 STRING:Q9SL79 PaxDb:Q9SL79
PRIDE:Q9SL79 ProMEX:Q9SL79 EnsemblPlants:AT2G20020.1 GeneID:816521
KEGG:ath:AT2G20020 TAIR:At2g20020 eggNOG:NOG320222
InParanoid:Q9SL79 OMA:RRRVCKI PhylomeDB:Q9SL79
Genevestigator:Q9SL79 GO:GO:0000373 Uniprot:Q9SL79
Length = 701
Score = 147 (56.8 bits), Expect = 1.6e-11, Sum P(2) = 1.6e-11
Identities = 41/143 (28%), Positives = 68/143 (47%)
Query: 198 PIELSKDRHREVGSLNQKQI--KGYHEVDDPSVLPWKRNTDRRR-RSNTELAEKMIPEHE 254
P+ S+ RE S + KG V P P++ R S E+ + + + E
Sbjct: 190 PLPQSQKTPREFDSFRLPPVGKKGLKPVQKPG--PFRPGVGPRYVYSKEEILGEPLTKEE 247
Query: 255 LQRLRNISLRMLERTKVGSAGITQALVDSIHEKWKLDEVVKLKFEEPHSLQMKRTHEILE 314
++ L L+ + +G G+T ++++IH+ WK V K+K + ++ M E LE
Sbjct: 248 VRELVTSCLKTTRQLNMGRDGLTHNMLNNIHDLWKRRRVCKIKCKGVCTVDMDNVCEQLE 307
Query: 315 RRTGGLVIWRSGSSVVLFRGMAY 337
+ GG VI+R G + LFRG Y
Sbjct: 308 EKIGGKVIYRRGGVLFLFRGRNY 330
Score = 97 (39.2 bits), Expect = 1.6e-11, Sum P(2) = 1.6e-11
Identities = 25/94 (26%), Positives = 49/94 (52%)
Query: 659 ETITNEERFLLRKMGLSMKPYLLLGRRGIYDGTIENMHLHWKYRELVKIIVKGKSFAQVK 718
E +T +E +R+ G + P LG+ G+Y ++N+ ++ ELV+I +G + +
Sbjct: 359 EGLTRQEATNMRRKGRELMPICKLGKNGVYCDLVKNVKEAFEVCELVRIDCQGMKGSDFR 418
Query: 719 QIAISLEAESGGVLVSLDKTPKGIAIIVYRGKNY 752
+I L+ VLVS + I+++RG+ +
Sbjct: 419 KIGAKLKDLVPCVLVSFENEQ----ILIWRGREW 448
Score = 78 (32.5 bits), Expect = 1.4e-09, Sum P(2) = 1.4e-09
Identities = 33/128 (25%), Positives = 57/128 (44%)
Query: 433 YKPPLRLLPYGIK--P-GLRDCETTEFRRLARKTPPHFALGRNRELQGLAKAMVKLWEKS 489
+KP + P I+ P GL E T RR R+ P LG+N L K + + +E
Sbjct: 343 WKPVAPVYPRLIQQVPEGLTRQEATNMRRKGRELMPICKLGKNGVYCDLVKNVKEAFEVC 402
Query: 490 AIAKIAIKRDVMNTRNERMAEELKKLTGGTLLCRNKDYIVFYRGNDFLPPVVTDAVKERS 549
+ +I + + + ++ +LK L L+ + I+ +RG ++ + T K+
Sbjct: 403 ELVRIDCQ-GMKGSDFRKIGAKLKDLVPCVLVSFENEQILIWRGREWKSSLTTPD-KKGD 460
Query: 550 KLTDIRQD 557
L DI D
Sbjct: 461 ILEDIEVD 468
Score = 75 (31.5 bits), Expect = 0.00062, Sum P(2) = 0.00062
Identities = 19/85 (22%), Positives = 37/85 (43%)
Query: 452 ETTEFRRLARKTPPHFALGRNRELQGLAKAMVKLWEKSAIAKIAIKRDVMNTRNERMAEE 511
E E KT +GR+ + + LW++ + KI K V + + E+
Sbjct: 247 EVRELVTSCLKTTRQLNMGRDGLTHNMLNNIHDLWKRRRVCKIKCK-GVCTVDMDNVCEQ 305
Query: 512 LKKLTGGTLLCRNKDYIVFYRGNDF 536
L++ GG ++ R + +RG ++
Sbjct: 306 LEEKIGGKVIYRRGGVLFLFRGRNY 330
>TAIR|locus:2028100 [details] [associations]
symbol:CAF2 species:3702 "Arabidopsis thaliana"
[GO:0003723 "RNA binding" evidence=IEA] [GO:0009507 "chloroplast"
evidence=ISM] [GO:0000373 "Group II intron splicing" evidence=IDA]
InterPro:IPR001890 Pfam:PF01985 PROSITE:PS51295 SMART:SM01103
EMBL:CP002684 GenomeReviews:CT485782_GR GO:GO:0009570 GO:GO:0006397
GO:GO:0003723 GO:GO:0030529 EMBL:AC007945 ProtClustDB:CLSN2686958
Gene3D:3.30.110.60 SUPFAM:SSF75471 GO:GO:0000373 EMBL:AC005292
EMBL:AY062732 EMBL:AY114649 IPI:IPI00545122 RefSeq:NP_173754.2
UniGene:At.26886 ProteinModelPortal:Q9LDA9 SMR:Q9LDA9 STRING:Q9LDA9
PRIDE:Q9LDA9 EnsemblPlants:AT1G23400.1 GeneID:838948
KEGG:ath:AT1G23400 TAIR:At1g23400 eggNOG:NOG328950
HOGENOM:HOG000237818 InParanoid:Q9LDA9 OMA:RRQEICK PhylomeDB:Q9LDA9
Genevestigator:Q9LDA9 Uniprot:Q9LDA9
Length = 564
Score = 125 (49.1 bits), Expect = 1.4e-08, Sum P(2) = 1.4e-08
Identities = 38/142 (26%), Positives = 62/142 (43%)
Query: 198 PIELSKDRHREVGSLNQKQI--KGYHEVDDPSVLPWKRNTDRRRRSNTELAEKMIPEHEL 255
P++ SK + S N G V+ P LP+ R + + E+ + + E
Sbjct: 150 PLKKSKKKIPLFDSFNPPPAGKSGVKYVEMPGPLPFGRYP-KEGMNREEVLGEPLKRWEK 208
Query: 256 QRLRNISLRMLERTKVGSAGITQALVDSIHEKWKLDEVVKLKFEEPHSLQMKRTHEILER 315
L + + +G G T +++ IH WK V K++ + ++ M +LE
Sbjct: 209 GMLIKPHMHDNRQVNLGRDGFTHNMLELIHSHWKRRRVCKVRCKGVPTVDMNNVCRVLEE 268
Query: 316 RTGGLVIWRSGSSVVLFRGMAY 337
+TGG +I R G V LFRG Y
Sbjct: 269 KTGGEIIHRVGGVVYLFRGRNY 290
Score = 89 (36.4 bits), Expect = 1.4e-08, Sum P(2) = 1.4e-08
Identities = 25/94 (26%), Positives = 46/94 (48%)
Query: 659 ETITNEERFLLRKMGLSMKPYLLLGRRGIYDGTIENMHLHWKYRELVKIIVKGKSFAQVK 718
E +T EE R G S++P L + G+Y ++++ ++ LVK+ G + K
Sbjct: 319 EGLTKEEAHEFRVKGKSLRPICKLSKNGVYVSLVKDVRDAFELSSLVKVDCPGLEPSDYK 378
Query: 719 QIAISLEAESGGVLVSLDKTPKGIAIIVYRGKNY 752
+I L+ VL+S D I+++RG+ +
Sbjct: 379 KIGAKLKELVPCVLLSFDDEQ----ILMWRGREW 408
Score = 67 (28.6 bits), Expect = 1.5e-06, Sum P(3) = 1.5e-06
Identities = 27/107 (25%), Positives = 50/107 (46%)
Query: 433 YKPPLRLLPYGIK--P-GLRDCETTEFRRLARKTPPHFALGRNRELQGLAKAMVKLWEKS 489
+KP + P I+ P GL E EFR + P L +N L K + +E S
Sbjct: 303 WKPAAPVYPKLIQEVPEGLTKEEAHEFRVKGKSLRPICKLSKNGVYVSLVKDVRDAFELS 362
Query: 490 AIAKIAIKRDVMNTRNERMAEELKKLTGGTLLCRNKDYIVFYRGNDF 536
++ K+ + + +++ +LK+L LL + + I+ +RG ++
Sbjct: 363 SLVKVDCP-GLEPSDYKKIGAKLKELVPCVLLSFDDEQILMWRGREW 408
Score = 51 (23.0 bits), Expect = 0.00011, Sum P(2) = 0.00011
Identities = 22/109 (20%), Positives = 44/109 (40%)
Query: 482 MVKLWEKSAIAKIAIKRDVMNTRNERMAEELKKLTGGTLLCRNKDYIVFYRGNDFLPPVV 541
M+ LW+++ + A+ + ++ + + +++++L G T L Y N
Sbjct: 454 MISLWQRALESSKAVILEELDLGPDDLLKKVEELEG-TSLAAEHTYTAMVLSNT--DGAA 510
Query: 542 TDAVKERSKLTDIRQDEEERARHVASALIELKAKGFVGSLVAGTLAETL 590
D V E+ + + D ++ S L G VGSL + L
Sbjct: 511 EDYVDEKDRSEEYYSDIDDDFDDECSDDESLDPVGPVGSLPVDKIVRKL 559
Score = 44 (20.5 bits), Expect = 1.5e-06, Sum P(3) = 1.5e-06
Identities = 7/15 (46%), Positives = 12/15 (80%)
Query: 649 LDPAELPSDLETITN 663
LDP++ PS+ +T+ N
Sbjct: 430 LDPSDKPSEEQTVAN 444
>TAIR|locus:2126694 [details] [associations]
symbol:AT4G31010 species:3702 "Arabidopsis thaliana"
[GO:0003723 "RNA binding" evidence=IEA] [GO:0005739 "mitochondrion"
evidence=ISM] [GO:0008150 "biological_process" evidence=ND]
[GO:0000956 "nuclear-transcribed mRNA catabolic process"
evidence=RCA] [GO:0010048 "vernalization response" evidence=RCA]
[GO:0048573 "photoperiodism, flowering" evidence=RCA]
InterPro:IPR001890 Pfam:PF01985 PROSITE:PS51295 SMART:SM01103
GO:GO:0005739 EMBL:CP002687 GenomeReviews:CT486007_GR GO:GO:0008380
GO:GO:0006397 GO:GO:0003723 GO:GO:0030529 EMBL:AL022198
EMBL:AL161578 EMBL:AY042864 EMBL:AY072146 EMBL:AY096489
IPI:IPI00527272 PIR:B85363 RefSeq:NP_194830.2 UniGene:At.31782
UniGene:At.71202 ProteinModelPortal:Q8VYD9 SMR:Q8VYD9 PaxDb:Q8VYD9
PRIDE:Q8VYD9 EnsemblPlants:AT4G31010.1 GeneID:829228
KEGG:ath:AT4G31010 TAIR:At4g31010 eggNOG:NOG290479
HOGENOM:HOG000242611 InParanoid:Q8VYD9 OMA:MVRDAFL PhylomeDB:Q8VYD9
ProtClustDB:CLSN2686958 Genevestigator:Q8VYD9 Gene3D:3.30.110.60
SUPFAM:SSF75471 Uniprot:Q8VYD9
Length = 405
Score = 107 (42.7 bits), Expect = 1.4e-07, Sum P(2) = 1.4e-07
Identities = 33/129 (25%), Positives = 64/129 (49%)
Query: 211 SLNQKQIKGYHEVDDPSVLPWKRNTDRRRRSNTELAEKMIPEHELQRLRNISLRMLERTK 270
++N K ++ V+DP + ++RR+ ++ + E E + L + R + +
Sbjct: 127 AVNPK-VESVDGVEDPKL------EEKRRKVREKIQGASLTEAERKFLVELCQRNKTKRQ 179
Query: 271 V--GSAGITQALVDSIHEKWKLDEVVKLKFEEPHSLQMKRTHEILERRTGGLVIWRSGSS 328
V G G+T +++ ++ WK E V++K +L MK LE +T G V+ + +
Sbjct: 180 VNLGRDGLTHNMLNDVYNHWKHAEAVRVKCLGVPTLDMKNVIFHLEDKTFGQVVSKHSGT 239
Query: 329 VVLFRGMAY 337
+VL+RG Y
Sbjct: 240 LVLYRGRNY 248
Score = 94 (38.1 bits), Expect = 1.4e-07, Sum P(2) = 1.4e-07
Identities = 32/137 (23%), Positives = 63/137 (45%)
Query: 647 ESLDPAELPSDLETITNEERFLLRKMGLSMKPYLLLGRRGIYDGTIENMHLHWKYRELVK 706
E + P + + ++ ++ +E +RK GL++ L + G Y + + + ELV+
Sbjct: 265 EPVYPRLIKTTIDGLSIDETKAMRKKGLAVPALTKLAKNGYYGSLVPMVRDAFLVSELVR 324
Query: 707 IIVKGKSFAQVKQIAISLEAESGGVLVSLDKTPKGIAIIVYRGKNYVRPLKLRPQ--NLL 764
I G K+I L +LV+ DK ++++RGK+Y +P K + + +
Sbjct: 325 IDCLGLERKDYKKIGAKLRDLVPCILVTFDKEQ----VVIWRGKDY-KPPKEDDEYSSFI 379
Query: 765 TRRQALARSVELQRREG 781
R ++ V+L G
Sbjct: 380 HRESSIDSDVDLSCSRG 396
Score = 67 (28.6 bits), Expect = 8.2e-05, Sum P(2) = 8.2e-05
Identities = 27/117 (23%), Positives = 50/117 (42%)
Query: 433 YKPPLRLLPYGIKP---GLRDCETTEFRRLARKTPPHFALGRNRELQGLAKAMVKLWEKS 489
+KP + P IK GL ET R+ P L +N G ++V + +
Sbjct: 261 WKPHEPVYPRLIKTTIDGLSIDETKAMRKKGLAVPALTKLAKN----GYYGSLVPMVRDA 316
Query: 490 AIAKIAIKRDVMNTRNE---RMAEELKKLTGGTLLCRNKDYIVFYRGNDFLPPVVTD 543
+ ++ D + + ++ +L+ L L+ +K+ +V +RG D+ PP D
Sbjct: 317 FLVSELVRIDCLGLERKDYKKIGAKLRDLVPCILVTFDKEQVVIWRGKDYKPPKEDD 373
>TAIR|locus:2160195 [details] [associations]
symbol:AT5G54890 species:3702 "Arabidopsis thaliana"
[GO:0003723 "RNA binding" evidence=IEA] [GO:0005739 "mitochondrion"
evidence=ISM] [GO:0008150 "biological_process" evidence=ND]
InterPro:IPR001890 Pfam:PF01985 PROSITE:PS51295 SMART:SM01103
GO:GO:0005739 EMBL:CP002688 GenomeReviews:BA000015_GR GO:GO:0008380
GO:GO:0006397 GO:GO:0003723 GO:GO:0030529 HOGENOM:HOG000242611
ProtClustDB:CLSN2686958 Gene3D:3.30.110.60 SUPFAM:SSF75471
EMBL:AB005232 EMBL:BP797158 IPI:IPI00517289 RefSeq:NP_200300.1
UniGene:At.43134 ProteinModelPortal:Q9FFU1 PRIDE:Q9FFU1
EnsemblPlants:AT5G54890.1 GeneID:835580 KEGG:ath:AT5G54890
TAIR:At5g54890 eggNOG:NOG298573 InParanoid:Q9FFU1 OMA:FRYSYSE
PhylomeDB:Q9FFU1 Genevestigator:Q9FFU1 Uniprot:Q9FFU1
Length = 358
Score = 121 (47.7 bits), Expect = 5.3e-06, Sum P(2) = 5.3e-06
Identities = 30/102 (29%), Positives = 52/102 (50%)
Query: 236 DRRRRSNTELAEKMIPEHELQRLRNISLRMLERTKVGSAGITQALVDSIHEKWKLDEVVK 295
+R R L E + E ++R R+ + +G G+T ++D IH WK E V+
Sbjct: 134 ERARVLGETLTEDEVTEL-IERYRHSDCT--RQINLGKGGVTHNMIDDIHNHWKKAEAVR 190
Query: 296 LKFEEPHSLQMKRTHEILERRTGGLVIWRSGSSVVLFRGMAY 337
+K +L M LE ++GG +++R+ + +VL+RG Y
Sbjct: 191 IKCLGVPTLDMDNICFHLEEKSGGKIVYRNINILVLYRGRNY 232
Score = 62 (26.9 bits), Expect = 5.3e-06, Sum P(2) = 5.3e-06
Identities = 22/87 (25%), Positives = 40/87 (45%)
Query: 664 EERFLLRKMGLSMKPYLLLGRRGIYDGTIENMHLHWKYRELVKIIVKGKSFAQVKQIAIS 723
EE +R GL + L R G+Y + + ++ E+V++ + K+I +
Sbjct: 266 EETKEMRNRGLHSPALMKLTRNGVYVNVVGRVREEFETEEIVRLDCTHVGMSDCKRIGVK 325
Query: 724 LEAESGGVLVSLDKTPKGIAIIVYRGK 750
L+ E + L K + II++RGK
Sbjct: 326 LK-EMVPCVPILFKDEQ---IILWRGK 348
Parameters:
V=100
filter=SEG
E=0.001
ctxfactor=1.00
Query ----- As Used ----- ----- Computed ----
Frame MatID Matrix name Lambda K H Lambda K H
+0 0 BLOSUM62 0.317 0.133 0.385 same same same
Q=9,R=2 0.244 0.0300 0.180 n/a n/a n/a
Query
Frame MatID Length Eff.Length E S W T X E2 S2
+0 0 810 766 0.00092 121 3 11 22 0.42 34
37 0.45 37
Statistics:
Database: /share/blast/go-seqdb.fasta
Title: go_20130330-seqdb.fasta
Posted: 5:47:42 AM PDT Apr 1, 2013
Created: 5:47:42 AM PDT Apr 1, 2013
Format: XDF-1
# of letters in database: 169,044,731
# of sequences in database: 368,745
# of database sequences satisfying E: 12
No. of states in DFA: 624 (66 KB)
Total size of DFA: 377 KB (2186 KB)
Time to generate neighborhood: 0.00u 0.00s 0.00t Elapsed: 00:00:00
No. of threads or processors used: 24
Search cpu time: 70.13u 0.13s 70.26t Elapsed: 00:00:04
Total cpu time: 70.13u 0.13s 70.26t Elapsed: 00:00:04
Start: Mon May 20 17:09:27 2013 End: Mon May 20 17:09:31 2013