BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 003572
(810 letters)
Database: swissprot
539,616 sequences; 191,569,459 total letters
Searching..................................................done
>sp|Q6YYA3|CRS1_ORYSJ Chloroplastic group IIA intron splicing facilitator CRS1,
chloroplastic OS=Oryza sativa subsp. japonica
GN=Os08g0360100 PE=2 SV=1
Length = 725
Score = 378 bits (971), Expect = e-104, Method: Compositional matrix adjust.
Identities = 229/591 (38%), Positives = 346/591 (58%), Gaps = 21/591 (3%)
Query: 228 VLPWKRNTDR------RRRSNTEL---AEKMIPEHELQRLRNISLRMLERTKVGSAGITQ 278
+PW D RR T + AE + EL+RLR + + AGIT
Sbjct: 124 AVPWAAARDEETKVVLRREKKTRVPTRAETELEAGELERLRRAARGKERWARAKKAGITD 183
Query: 279 ALVDSIHEKW-KLDEVVKLKFEEPHSLQMKRTHEILERRTGGLVIWRSGSSVVLFRGMAY 337
+V+ + +W K E+ ++ EP M R EILE +TGGLV+W G ++RG +Y
Sbjct: 184 EVVEEVRGQWAKGQELAGVRIVEPLRRCMDRAREILEIKTGGLVVWTRGGIHFVYRGSSY 243
Query: 338 KLPCVQSFTKH----NHTQQTQDVTNEVMRNVGEHPPRSAMESYVPDSANNLENLSKEEL 393
+++ +H N+ ++ VT+ + G++ + + D A++ ++ +
Sbjct: 244 ----LENAKRHRDFVNYNEELSPVTSNNPTSQGKYWSKDETLTNDNDEADDKDDKPIKGT 299
Query: 394 MDLCELNYLLDELGPRFKDWPGREPLPVDADLLPPVVPDYKPPLRLLPYGIKPGLRDCET 453
+ E+N LLD LGPRF DW PLPVDADLLP VVPD+K P R P G++P L D E
Sbjct: 300 LYEREVNRLLDSLGPRFIDWWWNTPLPVDADLLPEVVPDFKTPFRQCPPGVRPALADEEL 359
Query: 454 TEFRRLARKTPPHFALGRNRELQGLAKAMVKLWEKSAIAKIAIKRDVMNTRNERMAEELK 513
T R+ AR P HF LGRN +LQGLA A++KLWEKS IAK+A+K + NT +E+MA LK
Sbjct: 360 TYLRKHARPLPTHFVLGRNTKLQGLAAAILKLWEKSLIAKVAVKVGIQNTNHEQMARNLK 419
Query: 514 KLTGGTLLCRNKDYIVFYRGNDFLPPVVTDAVKERSKLTDIRQDEEERAR-HVASALIEL 572
+LTGGT++ RNKDYI+ YRG DFLP V ++V ER +Q +EE AR +A +L +
Sbjct: 420 RLTGGTVILRNKDYIIIYRGKDFLPGGVAESVIERESQVHDQQAKEEEARLKMADSLQMI 479
Query: 573 KAKGFVGSLVAGTLAETLAATSRWGRQPSYEDVEKMMRDSTLSRHASLLRYLEQKLALAK 632
S V GT E R+ + E+ ++ ++ R L+ E +L++
Sbjct: 480 VGLSSERSYV-GTFREYQDFHDSHARR-TTENNFRIQLEAKKHRLEKELKDQEWRLSMLT 537
Query: 633 RKLKMADKALAKVQESLDPAELPSDLETITNEERFLLRKMGLSMKPYLLLGRRGIYDGTI 692
+K++ +++ LAK+ S P++ D E +T EER + RK+GL M ++LLGRRG+++G I
Sbjct: 538 KKIERSNQVLAKLHSSWSPSKKDGDRELLTEEERRIFRKIGLKMDEHVLLGRRGVFEGVI 597
Query: 693 ENMHLHWKYRELVKIIVKGKSFAQVKQIAISLEAESGGVLVSLDKTPKGIAIIVYRGKNY 752
E +H HWK++E+VK+I K +Q+ ++ LE E+GG L+++++ AII+YRGKNY
Sbjct: 598 EEIHQHWKHKEVVKVITKQNQASQITYTSMMLEVETGGTLIAIERFTTSHAIILYRGKNY 657
Query: 753 VRPLKLRPQNLLTRRQALARSVELQRREGLKHHILDLQERIELVKSELEEI 803
RP K P NLLT+R+AL RS+E+QRR +K+ + ++ I+ +K EL +
Sbjct: 658 RRPTKSAPSNLLTKREALQRSIEVQRRGSMKYFAQERKKSIDELKRELRNV 708
>sp|Q9FYT6|CRS1_MAIZE Chloroplastic group IIA intron splicing facilitator CRS1,
chloroplastic OS=Zea mays GN=CRS1 PE=1 SV=1
Length = 715
Score = 367 bits (943), Expect = e-100, Method: Compositional matrix adjust.
Identities = 221/535 (41%), Positives = 308/535 (57%), Gaps = 27/535 (5%)
Query: 274 AGITQALVDSIHEKWKL-DEVVKLKFEEPHSLQMKRTHEILERRTGGLVIWRSGSSVVLF 332
AG+T +V + +W +E+ ++ EP M R EILE +TGGLV+W G ++
Sbjct: 194 AGVTDEVVKEVRREWASGEELAAVRIVEPLRRSMDRAREILEIKTGGLVVWTKGDMHFVY 253
Query: 333 RGMAYKLPCVQSFTKHNHTQQTQDVTNEVMRNVGEHPPRSAMESYVPDSANNLENLSKEE 392
RG Y Q KH+HT + NV H + E+ E K
Sbjct: 254 RGSKY-----QQNAKHSHT---------FLTNV--HKDDAFQENDQSICGQKDEEPVKGT 297
Query: 393 LMDLCELNYLLDELGPRFKDWPGREPLPVDADLLPPVVPDYKPPLRLLPYGIKPGLRDCE 452
L + E+N LLD LGPRF DW PLPVDADLLP VP K P RL P G++P L D E
Sbjct: 298 LYER-EVNRLLDTLGPRFVDWWWDTPLPVDADLLPEFVPGSKTPYRLCPPGVRPTLADEE 356
Query: 453 TTEFRRLARKTPPHFALGRNRELQGLAKAMVKLWEKSAIAKIAIKRDVMNTRNERMAEEL 512
T R+LAR P HFALGRN LQGLA A++KLWEKS IAKIA+K + NT NE+MA L
Sbjct: 357 LTYLRKLARLLPTHFALGRNTRLQGLAAAILKLWEKSLIAKIAVKIGIQNTNNEQMAWNL 416
Query: 513 KKLTGGTLLCRNKDYIVFYRGNDFLPPVVTDAVKERSKLTDIRQDEEERARHVASALIEL 572
K LTGGT++ RNKD+I+ YRG DFLP V V +R Q +EE AR A +++
Sbjct: 417 KHLTGGTVILRNKDFIILYRGKDFLPGGVAQTVIQREAQVHDEQVKEEEARLKAVDSLQM 476
Query: 573 KAKGFVGSLVA----GTLAETLAATSRWGRQPSYEDVEKMMRDSTLSRHASLLRYLEQKL 628
VG L GT E +++ + + + ++ R L+ E KL
Sbjct: 477 -----VGELSEESSLGTFREYQGFHAKFVHENTENSNTMIELEAEKYRLEKELKDHEWKL 531
Query: 629 ALAKRKLKMADKALAKVQESLDPAELPSDLETITNEERFLLRKMGLSMKPYLLLGRRGIY 688
++ +K++ +++ALAK+ S P+E +D E +T EE+ + R++G M +LLGRRGI+
Sbjct: 532 SVLNKKIERSNQALAKLHSSWSPSEQSADREHLTEEEKIMFRRIGRKMDGLVLLGRRGIF 591
Query: 689 DGTIENMHLHWKYRELVKIIVKGKSFAQVKQIAISLEAESGGVLVSLDKTPKGIAIIVYR 748
DG IE +H HWK++E+VK+I K Q+ A LE E+GG+L++++K AII+YR
Sbjct: 592 DGVIEEIHQHWKHKEVVKVITKQNQTRQIMYAASLLEVETGGILIAVEKLTTSHAIILYR 651
Query: 749 GKNYVRPLKLRPQNLLTRRQALARSVELQRREGLKHHILDLQERIELVKSELEEI 803
GKNY RP K NLLT+R+AL RS+E+QRR +K+ + + Q+ I +K +L +
Sbjct: 652 GKNYRRPAKSSFSNLLTKREALRRSIEVQRRGSMKYFVRERQKSILELKRKLRYV 706
>sp|Q9LF10|CRS1_ARATH Chloroplastic group IIA intron splicing facilitator CRS1,
chloroplastic OS=Arabidopsis thaliana GN=At5g16180 PE=2
SV=2
Length = 720
Score = 355 bits (912), Expect = 7e-97, Method: Compositional matrix adjust.
Identities = 226/581 (38%), Positives = 317/581 (54%), Gaps = 57/581 (9%)
Query: 229 LPWKRNTDR------RRRSNTELAEKMIPEHELQRLRNISLRMLERTKVGSAGITQALVD 282
+PW+R +R ++ S AE ++ E L RLR + +M + V AG+T+ +V+
Sbjct: 180 MPWEREEERFILRRMKKESVPTTAELILDEGLLNRLRREASKMRKWVNVRKAGVTELVVN 239
Query: 283 SIHEKWKLDEVVKLKFEEPHSLQMKRTHEILERRTGGLVIWRSGSSVVLFRGMAYKLPCV 342
I WKL+E+ ++F+ P M+R EI+E +TGGLV+ +V++RG
Sbjct: 240 KIKSMWKLNELAMVRFDVPLCRNMERAQEIIEMKTGGLVVLSKKEFLVVYRG-------- 291
Query: 343 QSFTKHNHTQQTQDVTNEVMRNVGEHPPRSAMESYVPDSANNLENLSKEELMDLCELNYL 402
+++ + QD E+ ++ E E + L
Sbjct: 292 ----GPSYSSEGQD---EISSSLYER-----------------------------EADRL 315
Query: 403 LDELGPRFKDWPGREPLPVDADLLPPVVPDYKPPLRLLPYGIKPGLRDCETTEFRRLARK 462
LD LGPR+ DW R P PVDADLLP VV Y P R P + L D E T R +A+
Sbjct: 316 LDGLGPRYMDWWMRRPFPVDADLLPEVVNGYMTPSRRCPPNTRAKLTDEELTYLRNIAQP 375
Query: 463 TPPHFALGRNRELQGLAKAMVKLWEKSAIAKIAIKRDVMNTRNERMAEELKKLTGGTLLC 522
P HF LGRN LQGLA A+VKLWEK IAKIAIK +NT NE MA+EL+ LTGG L+
Sbjct: 376 LPFHFVLGRNYGLQGLASAIVKLWEKCIIAKIAIKWGALNTNNEEMADELRYLTGGVLIL 435
Query: 523 RNKDYIVFYRGNDFLPPVVTDAVKERSKLTDIRQDEEERARHVASALIELKAKG--FVGS 580
RNK IV YRG DFL V D V++R +L Q EE R L+E+ G +
Sbjct: 436 RNKYLIVLYRGKDFLSDEVADLVEDRERLLSRYQHFEETKRESDIELLEVVTNGKQLKET 495
Query: 581 LVAGTLAETLAATSRWGRQPSYEDVEKMMRDSTLSRHASLLRYLEQKLALAKRKLKMADK 640
+GTL E ++G D + ++ +R L+ E KL++ K K++ ++
Sbjct: 496 NKSGTLLEFQELQRKFGEM----DPRNLETEAEKARLEKELKSQEHKLSILKSKIEKSNM 551
Query: 641 ALAKVQESLDPAELPSDLETITNEERFLLRKMGLSMKPYLLLGRRGIYDGTIENMHLHWK 700
L K+ P+E D+E +TNEER LR++GL M L+LGRRG++ G +E +H HWK
Sbjct: 552 ELFKLNSLWKPSEGDDDIEILTNEERECLRRIGLKMNSSLVLGRRGVFFGVMEGLHQHWK 611
Query: 701 YRELVKIIVKGKSFAQVKQIAISLEAESGGVLVSLDKTPKGIAIIVYRGKNYVRP-LKLR 759
+RE+ K+I K F++V A +LE ES GVL+S++K +G AI++YRGKNY RP KL
Sbjct: 612 HREVAKVITMQKLFSRVVYTAKALETESNGVLISIEKLKEGHAILIYRGKNYKRPSSKLM 671
Query: 760 PQNLLTRRQALARSVELQRREGLKHHILDLQERIELVKSEL 800
QNLLT+R+AL RSV +QR LK + IE +K L
Sbjct: 672 AQNLLTKRKALQRSVVMQRLGSLKFFAYQRERAIEDLKVSL 712
>sp|Q67XL4|Y3544_ARATH Uncharacterized CRM domain-containing protein At3g25440,
chloroplastic OS=Arabidopsis thaliana GN=At3g25440 PE=2
SV=1
Length = 444
Score = 110 bits (275), Expect = 5e-23, Method: Compositional matrix adjust.
Identities = 65/182 (35%), Positives = 110/182 (60%), Gaps = 8/182 (4%)
Query: 625 EQKLALAKRKLKMADKALAKVQESLDP---AELPSDLETITNEERFLLRKMGLSMKPYLL 681
E+K+ RK + ++ L + + L+P AE D E +T EE F KMGL K Y+
Sbjct: 138 EEKILNKLRKARKKEERLMETMKKLEPSESAETTHDPEILTPEEHFYYLKMGLKCKNYVP 197
Query: 682 LGRRGIYDGTIENMHLHWKYRELVKIIVKGKSFAQVKQIAISLEAESGGVLVSLDKTPKG 741
+GRRGIY G I NMHLHWK + +++++K + +VK+IA+ L +GG+++ + +G
Sbjct: 198 VGRRGIYQGVILNMHLHWKKHQTLQVVIKTFTPDEVKEIAVELARLTGGIVLDVH---EG 254
Query: 742 IAIIVYRGKNYVRPLK--LRPQNLLTRRQALARSVELQRREGLKHHILDLQERIELVKSE 799
II+YRGKNYV+P + P+ L R++AL +S ++ +I L++ ++L++++
Sbjct: 255 NTIIMYRGKNYVQPPTEIMSPRITLPRKKALDKSKCRDALRAVRKYIPRLEQELQLLQAQ 314
Query: 800 LE 801
E
Sbjct: 315 AE 316
Score = 39.3 bits (90), Expect = 0.12, Method: Compositional matrix adjust.
Identities = 25/95 (26%), Positives = 48/95 (50%), Gaps = 2/95 (2%)
Query: 247 EKMIPEHELQRLRNISLRMLERTKVGSAGITQALVDSIHEKWKLDEVVKLKFEEPHSLQM 306
E + PE L+ + L+ VG GI Q ++ ++H WK + +++ + ++
Sbjct: 175 EILTPEEHFYYLK-MGLKCKNYVPVGRRGIYQGVILNMHLHWKKHQTLQVVIKTFTPDEV 233
Query: 307 KRTHEILERRTGGLVI-WRSGSSVVLFRGMAYKLP 340
K L R TGG+V+ G++++++RG Y P
Sbjct: 234 KEIAVELARLTGGIVLDVHEGNTIIMYRGKNYVQP 268
Score = 36.2 bits (82), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 24/85 (28%), Positives = 42/85 (49%), Gaps = 2/85 (2%)
Query: 456 FRRLARKTPPHFALGRNRELQGLAKAMVKLWEKSAIAKIAIKRDVMNTRNERMAEELKKL 515
+ ++ K + +GR QG+ M W+K ++ IK + E +A EL +L
Sbjct: 185 YLKMGLKCKNYVPVGRRGIYQGVILNMHLHWKKHQTLQVVIKTFTPDEVKE-IAVELARL 243
Query: 516 TGGTLL-CRNKDYIVFYRGNDFLPP 539
TGG +L + I+ YRG +++ P
Sbjct: 244 TGGIVLDVHEGNTIIMYRGKNYVQP 268
>sp|Q9SL79|CAF1P_ARATH CRS2-associated factor 1, chloroplastic OS=Arabidopsis thaliana
GN=At2g20020 PE=1 SV=2
Length = 701
Score = 58.2 bits (139), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 41/143 (28%), Positives = 68/143 (47%), Gaps = 5/143 (3%)
Query: 198 PIELSKDRHREVGSLNQKQI--KGYHEVDDPSVLPWKRNTDRRR-RSNTELAEKMIPEHE 254
P+ S+ RE S + KG V P P++ R S E+ + + + E
Sbjct: 190 PLPQSQKTPREFDSFRLPPVGKKGLKPVQKPG--PFRPGVGPRYVYSKEEILGEPLTKEE 247
Query: 255 LQRLRNISLRMLERTKVGSAGITQALVDSIHEKWKLDEVVKLKFEEPHSLQMKRTHEILE 314
++ L L+ + +G G+T ++++IH+ WK V K+K + ++ M E LE
Sbjct: 248 VRELVTSCLKTTRQLNMGRDGLTHNMLNNIHDLWKRRRVCKIKCKGVCTVDMDNVCEQLE 307
Query: 315 RRTGGLVIWRSGSSVVLFRGMAY 337
+ GG VI+R G + LFRG Y
Sbjct: 308 EKIGGKVIYRRGGVLFLFRGRNY 330
Score = 46.6 bits (109), Expect = 9e-04, Method: Compositional matrix adjust.
Identities = 28/94 (29%), Positives = 44/94 (46%), Gaps = 4/94 (4%)
Query: 659 ETITNEERFLLRKMGLSMKPYLLLGRRGIYDGTIENMHLHWKYRELVKIIVKGKSFAQVK 718
E +T EE L L L +GR G+ + N+H WK R + KI KG +
Sbjct: 241 EPLTKEEVRELVTSCLKTTRQLNMGRDGLTHNMLNNIHDLWKRRRVCKIKCKGVCTVDMD 300
Query: 719 QIAISLEAESGGVLVSLDKTPKGIAIIVYRGKNY 752
+ LE + GG ++ +G + ++RG+NY
Sbjct: 301 NVCEQLEEKIGGKVIYR----RGGVLFLFRGRNY 330
Score = 44.3 bits (103), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 25/94 (26%), Positives = 49/94 (52%), Gaps = 4/94 (4%)
Query: 659 ETITNEERFLLRKMGLSMKPYLLLGRRGIYDGTIENMHLHWKYRELVKIIVKGKSFAQVK 718
E +T +E +R+ G + P LG+ G+Y ++N+ ++ ELV+I +G + +
Sbjct: 359 EGLTRQEATNMRRKGRELMPICKLGKNGVYCDLVKNVKEAFEVCELVRIDCQGMKGSDFR 418
Query: 719 QIAISLEAESGGVLVSLDKTPKGIAIIVYRGKNY 752
+I L+ VLVS + I+++RG+ +
Sbjct: 419 KIGAKLKDLVPCVLVSFENE----QILIWRGREW 448
Score = 35.8 bits (81), Expect = 1.6, Method: Compositional matrix adjust.
Identities = 35/150 (23%), Positives = 58/150 (38%), Gaps = 26/150 (17%)
Query: 411 KDWPGREPLP--------VDADLLPPVVPDYKPPLRLLPYGIKPG--------------- 447
+ W GR PLP D+ LPPV P++ P +PG
Sbjct: 183 RPWTGRAPLPQSQKTPREFDSFRLPPVGKKGLKPVQK-PGPFRPGVGPRYVYSKEEILGE 241
Query: 448 -LRDCETTEFRRLARKTPPHFALGRNRELQGLAKAMVKLWEKSAIAKIAIKRDVMNTRNE 506
L E E KT +GR+ + + LW++ + KI K V +
Sbjct: 242 PLTKEEVRELVTSCLKTTRQLNMGRDGLTHNMLNNIHDLWKRRRVCKIKCK-GVCTVDMD 300
Query: 507 RMAEELKKLTGGTLLCRNKDYIVFYRGNDF 536
+ E+L++ GG ++ R + +RG ++
Sbjct: 301 NVCEQLEEKIGGKVIYRRGGVLFLFRGRNY 330
>sp|Q84N49|CAF1P_MAIZE CRS2-associated factor 1, chloroplastic OS=Zea mays GN=CAF1 PE=1
SV=1
Length = 674
Score = 57.0 bits (136), Expect = 5e-07, Method: Compositional matrix adjust.
Identities = 33/94 (35%), Positives = 48/94 (51%), Gaps = 4/94 (4%)
Query: 659 ETITNEERFLLRKMGLSMKPYLLLGRRGIYDGTIENMHLHWKYRELVKIIVKGKSFAQVK 718
E +T EE L K L K L +GR G+ +EN+H HWK + + KI KG +
Sbjct: 183 EPLTKEEVSELVKGSLKSKRQLNMGRDGLTHNMLENIHSHWKRKRVCKIKCKGVCTIDMD 242
Query: 719 QIAISLEAESGGVLVSLDKTPKGIAIIVYRGKNY 752
I LE + GG ++ +G I ++RG+NY
Sbjct: 243 NICHQLEEKVGGKVIHR----QGGVIFLFRGRNY 272
Score = 55.1 bits (131), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 33/100 (33%), Positives = 49/100 (49%), Gaps = 4/100 (4%)
Query: 245 LAEKMIPEHELQRLRNISLRMLERTKVGSAGITQALVDSIHEKWKLDEVVKLKFEEPHSL 304
L E + E E+ L SL+ + +G G+T ++++IH WK V K+K + ++
Sbjct: 181 LGEPLTKE-EVSELVKGSLKSKRQLNMGRDGLTHNMLENIHSHWKRKRVCKIKCKGVCTI 239
Query: 305 QMKRTHEILERRTGGLVIWRSGSSVVLFRGMAYKL---PC 341
M LE + GG VI R G + LFRG Y PC
Sbjct: 240 DMDNICHQLEEKVGGKVIHRQGGVIFLFRGRNYNYRTRPC 279
Score = 40.4 bits (93), Expect = 0.061, Method: Compositional matrix adjust.
Identities = 33/149 (22%), Positives = 66/149 (44%), Gaps = 8/149 (5%)
Query: 428 PVVPDYKPPLRLLPYGIKPGLRDCETTEFRRLARKTPPHFALGRNRELQGLAKAMVKLWE 487
PV P Y + +P G+ P E TE R + PP LG+N L + + +E
Sbjct: 287 PVAPVYPRLVTKVPGGLTPD----EATEMRTRGHQLPPICKLGKNGVYANLVNQVREAFE 342
Query: 488 KSAIAKIAIKRDVMNTRNERMAEELKKLTGGTLLCRNKDYIVFYRGNDF---LPPVVTDA 544
+ ++ + + ++ +LK L LL ++I+ +RG+D+ LPP+
Sbjct: 343 ACDLVRVDCS-GLNKSDCRKIGAKLKDLVPCILLSFEFEHILMWRGSDWKSSLPPLENSY 401
Query: 545 VKERSKLTDIRQDEEERARHVASALIELK 573
+ + + ++ E+ H + L +++
Sbjct: 402 EVTKVQESFSGKESNEKVTHSGNVLAQIE 430
>sp|Q6Z4U2|CAF1M_ORYSJ CRS2-associated factor 1, mitochondrial OS=Oryza sativa subsp.
japonica GN=Os08g0174900 PE=2 SV=1
Length = 428
Score = 57.0 bits (136), Expect = 7e-07, Method: Compositional matrix adjust.
Identities = 26/74 (35%), Positives = 43/74 (58%)
Query: 264 RMLERTKVGSAGITQALVDSIHEKWKLDEVVKLKFEEPHSLQMKRTHEILERRTGGLVIW 323
R ++ +G G+T +++ IH WK DE V++K ++ M+ LE +TGGL+I
Sbjct: 173 RTKKQINLGRDGLTHNMLNDIHNHWKNDEAVRVKCLGVPTVDMQNVCHQLEDKTGGLIIH 232
Query: 324 RSGSSVVLFRGMAY 337
R G ++L+RG Y
Sbjct: 233 RHGGQLILYRGRHY 246
Score = 47.4 bits (111), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 30/96 (31%), Positives = 51/96 (53%), Gaps = 6/96 (6%)
Query: 659 ETITNEER-FLLRKMGLS-MKPYLLLGRRGIYDGTIENMHLHWKYRELVKIIVKGKSFAQ 716
E +T ER FL+ K S K + LGR G+ + ++H HWK E V++ G
Sbjct: 155 EPLTPAERAFLVSKCQKSRTKKQINLGRDGLTHNMLNDIHNHWKNDEAVRVKCLGVPTVD 214
Query: 717 VKQIAISLEAESGGVLVSLDKTPKGIAIIVYRGKNY 752
++ + LE ++GG+++ G +I+YRG++Y
Sbjct: 215 MQNVCHQLEDKTGGLIIHR----HGGQLILYRGRHY 246
Score = 44.3 bits (103), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 34/111 (30%), Positives = 54/111 (48%), Gaps = 4/111 (3%)
Query: 642 LAKVQESLDPAELPSDLETITNEERFLLRKMGLSMKPYLLLGRRGIYDGTIENMHLHWKY 701
L K E + P + + +E +T EE +RK GL + L + G Y + + +
Sbjct: 258 LWKPAEPVYPRLIKTTIEGLTVEETKEMRKKGLYVPVLTKLAKNGYYASLVPMVRDAFLT 317
Query: 702 RELVKIIVKGKSFAQVKQIAISLEAESGGVLVSLDKTPKGIAIIVYRGKNY 752
ELV+I KG + ++I + L ++VS DK IIV+RGK+Y
Sbjct: 318 DELVRIDSKGLPKSDYRKIGVKLRDLVPCIIVSFDKE----QIIVWRGKDY 364
>sp|Q5VMQ5|CAF1P_ORYSJ CRS2-associated factor 1, chloroplastic OS=Oryza sativa subsp.
japonica GN=Os01g0495900 PE=2 SV=1
Length = 701
Score = 56.6 bits (135), Expect = 8e-07, Method: Compositional matrix adjust.
Identities = 34/101 (33%), Positives = 51/101 (50%), Gaps = 7/101 (6%)
Query: 659 ETITNEERFLLRKMGLSMKPYLLLGRRGIYDGTIENMHLHWKYRELVKIIVKGKSFAQVK 718
E +T EE L K L K L +GR G+ +EN+H HWK + + KI KG +
Sbjct: 183 EPLTKEEVDELVKATLKTKRQLNIGRDGLTHNMLENIHSHWKRKRVCKIKCKGVCTVDMD 242
Query: 719 QIAISLEAESGGVLVSLDKTPKGIAIIVYRGKNY---VRPL 756
+ LE + GG ++ +G I ++RG+NY RP+
Sbjct: 243 NVCQQLEEKVGGKVIHH----QGGVIFLFRGRNYNYRTRPI 279
Score = 55.8 bits (133), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 35/122 (28%), Positives = 59/122 (48%), Gaps = 4/122 (3%)
Query: 218 KGYHEVDDPSVLPWKRNTDRRRR--SNTELAEKMIPEHELQRLRNISLRMLERTKVGSAG 275
KG V P P+ T+ R + S E+ + + + E+ L +L+ + +G G
Sbjct: 153 KGVKPVQSPG--PFLAGTEPRYQAASREEVLGEPLTKEEVDELVKATLKTKRQLNIGRDG 210
Query: 276 ITQALVDSIHEKWKLDEVVKLKFEEPHSLQMKRTHEILERRTGGLVIWRSGSSVVLFRGM 335
+T ++++IH WK V K+K + ++ M + LE + GG VI G + LFRG
Sbjct: 211 LTHNMLENIHSHWKRKRVCKIKCKGVCTVDMDNVCQQLEEKVGGKVIHHQGGVIFLFRGR 270
Query: 336 AY 337
Y
Sbjct: 271 NY 272
Score = 44.3 bits (103), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 31/116 (26%), Positives = 56/116 (48%), Gaps = 8/116 (6%)
Query: 428 PVVPDYKPPLRLLPYGIKPGLRDCETTEFRRLARKTPPHFALGRNRELQGLAKAMVKLWE 487
P P Y ++ +P G+ P E + R+ R+ PP LG+N L K + + +E
Sbjct: 287 PAAPVYPRLVKKIPDGLTPD----EAEDMRKRGRQLPPICKLGKNGVYLNLVKQVREAFE 342
Query: 488 KSAIAKIAIKRDVMNTRNERMAEELKKLTGGTLLCRNKDYIVFYRGNDF---LPPV 540
+ ++ + + ++ +LK L TLL ++I+ +RGND+ LPP+
Sbjct: 343 ACDLVRVDCS-GLNKSDCRKIGAKLKDLVPCTLLSFEFEHILMWRGNDWKSSLPPL 397
>sp|Q0J7J7|CAF2M_ORYSJ CRS2-associated factor 2, mitochondrial OS=Oryza sativa subsp.
japonica GN=Os08g0188000 PE=2 SV=2
Length = 366
Score = 53.1 bits (126), Expect = 9e-06, Method: Compositional matrix adjust.
Identities = 25/68 (36%), Positives = 39/68 (57%)
Query: 270 KVGSAGITQALVDSIHEKWKLDEVVKLKFEEPHSLQMKRTHEILERRTGGLVIWRSGSSV 329
+G G+T ++D IH WK E V++K +L M LE +TGG VI+R+ + +
Sbjct: 167 NLGKGGVTHNMIDDIHNHWKRAEAVRIKCLGVPTLDMDNICFHLEDKTGGKVIYRNINIL 226
Query: 330 VLFRGMAY 337
+L+RG Y
Sbjct: 227 ILYRGRNY 234
Score = 47.0 bits (110), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 30/90 (33%), Positives = 46/90 (51%), Gaps = 6/90 (6%)
Query: 682 LGRRGIYDGTIENMHLHWKYRELVKIIVKGKSFAQVKQIAISLEAESGGVLVSLDKTPKG 741
LG+ G+ I+++H HWK E V+I G + I LE ++GG ++ +
Sbjct: 168 LGKGGVTHNMIDDIHNHWKRAEAVRIKCLGVPTLDMDNICFHLEDKTGGKVIYRNIN--- 224
Query: 742 IAIIVYRGKNYVRPLKLRPQNLLTRRQALA 771
+I+YRG+NY K RPQ L + LA
Sbjct: 225 -ILILYRGRNY--DPKQRPQIPLMLWKPLA 251
>sp|Q657G7|CAF2P_ORYSJ CRS2-associated factor 2, chloroplastic OS=Oryza sativa subsp.
japonica GN=Os01g0323300 PE=2 SV=1
Length = 607
Score = 53.1 bits (126), Expect = 9e-06, Method: Compositional matrix adjust.
Identities = 29/94 (30%), Positives = 48/94 (51%), Gaps = 4/94 (4%)
Query: 659 ETITNEERFLLRKMGLSMKPYLLLGRRGIYDGTIENMHLHWKYRELVKIIVKGKSFAQVK 718
E +T E L K +S L +GR G+ +E +H HW+ +E+ K+ +G +K
Sbjct: 228 EPLTAAEVRDLVKPHISHNRQLNIGRDGLTHNMLEMIHCHWRRQEICKVRCRGVPTVDMK 287
Query: 719 QIAISLEAESGGVLVSLDKTPKGIAIIVYRGKNY 752
+ LE +SGG ++ G + +YRG+NY
Sbjct: 288 NLCYHLEEKSGGKVIHR----VGGVVFLYRGRNY 317
Score = 49.3 bits (116), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 28/99 (28%), Positives = 49/99 (49%)
Query: 240 RSNTELAEKMIPEHELQRLRNISLRMLERTKVGSAGITQALVDSIHEKWKLDEVVKLKFE 299
RS E+ + + E++ L + + +G G+T +++ IH W+ E+ K++
Sbjct: 220 RSREEVLGEPLTAAEVRDLVKPHISHNRQLNIGRDGLTHNMLEMIHCHWRRQEICKVRCR 279
Query: 300 EPHSLQMKRTHEILERRTGGLVIWRSGSSVVLFRGMAYK 338
++ MK LE ++GG VI R G V L+RG Y
Sbjct: 280 GVPTVDMKNLCYHLEEKSGGKVIHRVGGVVFLYRGRNYN 318
Score = 43.9 bits (102), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 32/107 (29%), Positives = 53/107 (49%), Gaps = 8/107 (7%)
Query: 659 ETITNEERFLLRKMGLSMKPYLLLGRRGIYDGTIENMHLHWKYRELVKIIVKGKSFAQVK 718
E +T EE +R+ G + P L + GIY + ++ ++ +LVKI +G + + K
Sbjct: 346 EGLTKEEADEMRRRGKDLLPICKLAKNGIYIYLVRDVRDAFEGSDLVKIDCEGLNPSDYK 405
Query: 719 QIAISLEAESGGVLVSLDKTPKGIAIIVYRGKN----YVRPLKLRPQ 761
+I L VL+S D I+++RGK Y +PL L P+
Sbjct: 406 KIGAKLRDLVPCVLLSFDNE----QILMFRGKEWKSRYPKPLTLIPK 448
>sp|Q84N48|CAF2P_MAIZE CRS2-associated factor 2, chloroplastic OS=Zea mays GN=CAF2 PE=1
SV=1
Length = 611
Score = 52.4 bits (124), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 28/94 (29%), Positives = 48/94 (51%), Gaps = 4/94 (4%)
Query: 659 ETITNEERFLLRKMGLSMKPYLLLGRRGIYDGTIENMHLHWKYRELVKIIVKGKSFAQVK 718
E +T E L K +S L +GR G+ +E +H HW+ +E+ K+ +G +K
Sbjct: 232 EPLTPSEVRALVKPHISHNRQLNIGRDGLTHNMLEMIHCHWRRQEICKVRCRGVPTVDMK 291
Query: 719 QIAISLEAESGGVLVSLDKTPKGIAIIVYRGKNY 752
+ LE +SGG ++ G + +YRG++Y
Sbjct: 292 NLCYHLEEKSGGKVIHR----VGGVVFLYRGRHY 321
Score = 49.3 bits (116), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 28/93 (30%), Positives = 47/93 (50%), Gaps = 1/93 (1%)
Query: 245 LAEKMIPEHELQRLRNISLRMLERTKVGSAGITQALVDSIHEKWKLDEVVKLKFEEPHSL 304
L E + P E++ L + + +G G+T +++ IH W+ E+ K++ ++
Sbjct: 230 LGEPLTPS-EVRALVKPHISHNRQLNIGRDGLTHNMLEMIHCHWRRQEICKVRCRGVPTV 288
Query: 305 QMKRTHEILERRTGGLVIWRSGSSVVLFRGMAY 337
MK LE ++GG VI R G V L+RG Y
Sbjct: 289 DMKNLCYHLEEKSGGKVIHRVGGVVFLYRGRHY 321
Score = 42.7 bits (99), Expect = 0.013, Method: Compositional matrix adjust.
Identities = 31/107 (28%), Positives = 53/107 (49%), Gaps = 8/107 (7%)
Query: 659 ETITNEERFLLRKMGLSMKPYLLLGRRGIYDGTIENMHLHWKYRELVKIIVKGKSFAQVK 718
+ T EE +R+ G + P L + GIY ++++ ++ +LVKI +G + + K
Sbjct: 350 DGFTKEEADEMRRKGRDLLPICKLAKNGIYITLVKDVRDAFEGSDLVKIDCEGLNPSDYK 409
Query: 719 QIAISLEAESGGVLVSLDKTPKGIAIIVYRGKN----YVRPLKLRPQ 761
+I L VL+S D I+++RGK Y +PL L P+
Sbjct: 410 KIGAKLRDLVPCVLLSFDDE----QILMHRGKEWKSRYSKPLTLIPK 452
>sp|Q9FFU1|CAF2M_ARATH CRS2-associated factor 2, mitochondrial OS=Arabidopsis thaliana
GN=At5g54890 PE=2 SV=1
Length = 358
Score = 51.6 bits (122), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 23/70 (32%), Positives = 40/70 (57%)
Query: 268 RTKVGSAGITQALVDSIHEKWKLDEVVKLKFEEPHSLQMKRTHEILERRTGGLVIWRSGS 327
+ +G G+T ++D IH WK E V++K +L M LE ++GG +++R+ +
Sbjct: 163 QINLGKGGVTHNMIDDIHNHWKKAEAVRIKCLGVPTLDMDNICFHLEEKSGGKIVYRNIN 222
Query: 328 SVVLFRGMAY 337
+VL+RG Y
Sbjct: 223 ILVLYRGRNY 232
Score = 48.1 bits (113), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 27/72 (37%), Positives = 39/72 (54%), Gaps = 6/72 (8%)
Query: 682 LGRRGIYDGTIENMHLHWKYRELVKIIVKGKSFAQVKQIAISLEAESGGVLVSLDKTPKG 741
LG+ G+ I+++H HWK E V+I G + I LE +SGG +V +
Sbjct: 166 LGKGGVTHNMIDDIHNHWKKAEAVRIKCLGVPTLDMDNICFHLEEKSGGKIVY-----RN 220
Query: 742 IAIIV-YRGKNY 752
I I+V YRG+NY
Sbjct: 221 INILVLYRGRNY 232
>sp|Q9LDA9|CAF2P_ARATH CRS2-associated factor 2, chloroplastic OS=Arabidopsis thaliana
GN=At1g23400 PE=2 SV=1
Length = 564
Score = 50.8 bits (120), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 24/70 (34%), Positives = 37/70 (52%)
Query: 268 RTKVGSAGITQALVDSIHEKWKLDEVVKLKFEEPHSLQMKRTHEILERRTGGLVIWRSGS 327
+ +G G T +++ IH WK V K++ + ++ M +LE +TGG +I R G
Sbjct: 221 QVNLGRDGFTHNMLELIHSHWKRRRVCKVRCKGVPTVDMNNVCRVLEEKTGGEIIHRVGG 280
Query: 328 SVVLFRGMAY 337
V LFRG Y
Sbjct: 281 VVYLFRGRNY 290
Score = 47.0 bits (110), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 29/98 (29%), Positives = 48/98 (48%), Gaps = 12/98 (12%)
Query: 673 GLSMKPYLL------LGRRGIYDGTIENMHLHWKYRELVKIIVKGKSFAQVKQIAISLEA 726
G+ +KP++ LGR G +E +H HWK R + K+ KG + + LE
Sbjct: 209 GMLIKPHMHDNRQVNLGRDGFTHNMLELIHSHWKRRRVCKVRCKGVPTVDMNNVCRVLEE 268
Query: 727 ESGGVLVSLDKTPKGIAIIVYRGKNYVRPLKLRPQNLL 764
++GG ++ G + ++RG+NY + RPQ L
Sbjct: 269 KTGGEIIHR----VGGVVYLFRGRNYN--YRTRPQYPL 300
Score = 39.7 bits (91), Expect = 0.097, Method: Compositional matrix adjust.
Identities = 25/94 (26%), Positives = 46/94 (48%), Gaps = 4/94 (4%)
Query: 659 ETITNEERFLLRKMGLSMKPYLLLGRRGIYDGTIENMHLHWKYRELVKIIVKGKSFAQVK 718
E +T EE R G S++P L + G+Y ++++ ++ LVK+ G + K
Sbjct: 319 EGLTKEEAHEFRVKGKSLRPICKLSKNGVYVSLVKDVRDAFELSSLVKVDCPGLEPSDYK 378
Query: 719 QIAISLEAESGGVLVSLDKTPKGIAIIVYRGKNY 752
+I L+ VL+S D I+++RG+ +
Sbjct: 379 KIGAKLKELVPCVLLSFDDE----QILMWRGREW 408
>sp|Q8VYD9|CAF1M_ARATH CRS2-associated factor 1, mitochondrial OS=Arabidopsis thaliana
GN=At4g31010 PE=2 SV=1
Length = 405
Score = 43.1 bits (100), Expect = 0.010, Method: Compositional matrix adjust.
Identities = 21/71 (29%), Positives = 38/71 (53%), Gaps = 4/71 (5%)
Query: 682 LGRRGIYDGTIENMHLHWKYRELVKIIVKGKSFAQVKQIAISLEAESGGVLVSLDKTPKG 741
LGR G+ + +++ HWK+ E V++ G +K + LE ++ G +VS
Sbjct: 182 LGRDGLTHNMLNDVYNHWKHAEAVRVKCLGVPTLDMKNVIFHLEDKTFGQVVSKHSG--- 238
Query: 742 IAIIVYRGKNY 752
+++YRG+NY
Sbjct: 239 -TLVLYRGRNY 248
Score = 43.1 bits (100), Expect = 0.010, Method: Compositional matrix adjust.
Identities = 28/104 (26%), Positives = 53/104 (50%), Gaps = 2/104 (1%)
Query: 236 DRRRRSNTELAEKMIPEHELQRLRNISLRMLERTKV--GSAGITQALVDSIHEKWKLDEV 293
++RR+ ++ + E E + L + R + +V G G+T +++ ++ WK E
Sbjct: 145 EKRRKVREKIQGASLTEAERKFLVELCQRNKTKRQVNLGRDGLTHNMLNDVYNHWKHAEA 204
Query: 294 VKLKFEEPHSLQMKRTHEILERRTGGLVIWRSGSSVVLFRGMAY 337
V++K +L MK LE +T G V+ + ++VL+RG Y
Sbjct: 205 VRVKCLGVPTLDMKNVIFHLEDKTFGQVVSKHSGTLVLYRGRNY 248
Score = 40.8 bits (94), Expect = 0.044, Method: Compositional matrix adjust.
Identities = 29/114 (25%), Positives = 53/114 (46%), Gaps = 4/114 (3%)
Query: 642 LAKVQESLDPAELPSDLETITNEERFLLRKMGLSMKPYLLLGRRGIYDGTIENMHLHWKY 701
L K E + P + + ++ ++ +E +RK GL++ L + G Y + + +
Sbjct: 260 LWKPHEPVYPRLIKTTIDGLSIDETKAMRKKGLAVPALTKLAKNGYYGSLVPMVRDAFLV 319
Query: 702 RELVKIIVKGKSFAQVKQIAISLEAESGGVLVSLDKTPKGIAIIVYRGKNYVRP 755
ELV+I G K+I L +LV+ DK ++++RGK+Y P
Sbjct: 320 SELVRIDCLGLERKDYKKIGAKLRDLVPCILVTFDKE----QVVIWRGKDYKPP 369
>sp|A4XN51|MNME_CALS8 tRNA modification GTPase MnmE OS=Caldicellulosiruptor
saccharolyticus (strain ATCC 43494 / DSM 8903) GN=mnmE
PE=3 SV=1
Length = 455
Score = 34.7 bits (78), Expect = 2.9, Method: Compositional matrix adjust.
Identities = 42/184 (22%), Positives = 78/184 (42%), Gaps = 32/184 (17%)
Query: 240 RSNTELAEKMIPEHELQRLRNISLRMLERTKVGSAGITQALVDSIHEKWKLDEVVKLKFE 299
+++ E+A K+I + +I +R ALV+ +D+ + +KF+
Sbjct: 26 QNSIEVAGKIIKSKRFNSIYDIPVRY------------AALVEVYDNDEFIDQAILIKFK 73
Query: 300 EPHSLQMKRTHEILERRTGGLVIWRSGSSVVLFRGMAYKLPCVQSFTKH---------NH 350
PHS + EI + GG+V+ R VV+ G + +P FTK +
Sbjct: 74 APHSYTGEDVVEI--QSHGGMVVLRRILEVVIKNGARHAMPG--EFTKRAFLNGRLDLSQ 129
Query: 351 TQQTQDVTN---EVMRNVGEHPPRSAMESYVPDSANNLENL--SKEELMDLCELNYLLDE 405
+ D+ N E+++ + + + + A L NL S E +D E + +DE
Sbjct: 130 AEAIIDIINSKTELLQKNAAKQLKGVLSKKIDEIAEILLNLISSIEASIDFSE--HEVDE 187
Query: 406 LGPR 409
+ P+
Sbjct: 188 ISPQ 191
>sp|Q8ED70|DNLJ_SHEON DNA ligase OS=Shewanella oneidensis (strain MR-1) GN=ligA PE=3 SV=1
Length = 689
Score = 34.3 bits (77), Expect = 3.6, Method: Compositional matrix adjust.
Identities = 25/85 (29%), Positives = 43/85 (50%), Gaps = 6/85 (7%)
Query: 474 ELQGLAKAMVKLWEKSAIAKIAIKRDVMNTRNERMAEELKKLTGGTLLCRNKDY--IVFY 531
+L GLA ++ L+ + + A + D T E + E +K + L R +Y +V
Sbjct: 131 KLDGLAVSI--LYRNGVLERAATRGD--GTVGEDITENVKTIKSIPLRLRGNNYPELVEV 186
Query: 532 RGNDFLPPVVTDAVKERSKLTDIRQ 556
RG F+P +A+ ER++L D +Q
Sbjct: 187 RGEAFMPKAAFEALNERARLKDDKQ 211
>sp|A7TPF8|ZIP2_VANPO Protein ZIP2 OS=Vanderwaltozyma polyspora (strain ATCC 22028 / DSM
70294) GN=ZIP2 PE=3 SV=1
Length = 718
Score = 33.1 bits (74), Expect = 9.0, Method: Compositional matrix adjust.
Identities = 30/121 (24%), Positives = 57/121 (47%), Gaps = 14/121 (11%)
Query: 286 EKWKLDEVVKLKFEEPHSLQMKRTHEILERRTGGLVIWRSGSSVVLFRGMAYKLPCVQSF 345
EKW D + F + KR ++++ T L+ W SG + M + P ++
Sbjct: 88 EKWNPDRIGNFDFASYN----KREKLLIDKETKVLLSWISGLKLENEDIMEFPNPLIKIN 143
Query: 346 TKHN----HTQQTQDVTNEVMRNVGEHPPRSAMESYVPDSAN-NLENLSKEELMDLCELN 400
++ N T +T E++ + P+S+++ +P+ N N E L E+++ CELN
Sbjct: 144 SEFNSYIIETCNFCYLTKELLV----YSPKSSLDELMPNDLNKNFEKLENEKIIQ-CELN 198
Query: 401 Y 401
+
Sbjct: 199 F 199
Database: swissprot
Posted date: Mar 23, 2013 2:32 AM
Number of letters in database: 191,569,459
Number of sequences in database: 539,616
Lambda K H
0.316 0.133 0.383
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 300,325,757
Number of Sequences: 539616
Number of extensions: 13108731
Number of successful extensions: 57089
Number of sequences better than 100.0: 50
Number of HSP's better than 100.0 without gapping: 20
Number of HSP's successfully gapped in prelim test: 93
Number of HSP's that attempted gapping in prelim test: 56476
Number of HSP's gapped (non-prelim): 477
length of query: 810
length of database: 191,569,459
effective HSP length: 126
effective length of query: 684
effective length of database: 123,577,843
effective search space: 84527244612
effective search space used: 84527244612
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 66 (30.0 bits)