Query 003573
Match_columns 810
No_of_seqs 304 out of 1042
Neff 3.8
Searched_HMMs 29240
Date Tue Mar 26 17:31:44 2013
Command hhsearch -i /local_scratch/syshi/lefta3m/003573.a3m -d /local_scratch/syshi/pdb70.hhm -v 0 -o /local_scratch/syshi/H1_1624-1627//hhsearch_pdb/003573hhsearch_pdb
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 1rq8_A Conserved hypothetical 1.0 1 1 186.5 13.2 87 249-335 1-87 (104)
2 1rq8_A Conserved hypothetical 1.0 1 1 186.3 13.6 97 660-761 1-97 (104)
3 1jo0_A Hypothetical protein HI 1.0 1 1 185.4 12.6 87 249-335 2-88 (98)
4 1jo0_A Hypothetical protein HI 1.0 1 1 182.3 13.5 96 660-761 2-97 (98)
5 3ka5_A Ribosome-associated pro 1.0 1 1 15.8 6.0 49 292-340 1-52 (65)
6 2e6x_A TT1592, hypothetical pr 1.0 1 1 15.8 1.7 17 311-327 3-19 (69)
7 3lyv_A Ribosome-associated fac 1.0 1 1 15.4 3.5 49 292-340 2-53 (66)
8 3k2t_A LMO2511 protein; lister 1.0 1 1 15.1 3.6 47 293-339 2-51 (57)
9 2j01_J 50S ribosomal protein L 1.0 1 1 15.0 2.8 30 446-475 30-59 (173)
10 3sbx_A Putative uncharacterize 1.0 1 1 15.0 4.8 33 669-702 131-163 (189)
No 1
>1rq8_A Conserved hypothetical protein; structural genomics, SAV1595, YHBY, UPF0044, unknown function; NMR {Staphylococcus aureus} SCOP: d.68.4.1
Probab=1.00 E-value=1 Score=186.46 Aligned_cols=87 Identities=20% Similarity=0.321 Sum_probs=44.8
Q ss_pred CCCHHHHHHHHHHHHCCCCEEEECCCCCCHHHHHHHHHHHHHCCEEEEEECCCCHHHHHHHHHHHHHHHCCEEEEEECCE
Q ss_conf 99989999999832069870771799988999999999864189077995289857699999999988398599798668
Q 003573 249 MIPEHELQRLRNISLRMLERTKVGSAGITQALVDSIHEKWKLDEVVKLKFEEPHSLQMKRTHEILERRTGGLVIWRSGSS 328 (810)
Q Consensus 249 tLT~kErr~LRklAh~LkpvV~IGKaGVTd~VVeeIh~alk~rELVKVKv~~~~~~dmk~v~e~LEekTGG~VV~rIG~v 328 (810)
|||++|+++||++||+++|+|+|||+|||++|+++|+++|++||||||||.+++..+++++++.|+++|||++||+||++
T Consensus 1 mLt~kqr~~LR~~ah~Lkpvv~IGK~GlTe~vi~ei~~aL~~hELIKVkvl~~~~~d~~e~a~~la~~t~a~vVq~IG~~ 80 (104)
T 1rq8_A 1 MLTGKQKRYLRSLAHNIDPIFQIGKGGINENMIKQIDDTLENRELIKVHVLQNNFDDKKELAETLSEATRSELVQVIGSM 80 (104)
T ss_dssp CCCHHHHHHHHHHTTSSCCSCEECSSSCCHHHHHHHHHHHHHSSEEEEEECCCCHHHHHHHHHHHHHHHTEEEEEEETTE
T ss_pred CCCHHHHHHHHHHHCCCCCEEEECCCCCCHHHHHHHHHHHHHCCCEEEEEECCCHHHHHHHHHHHHHHHCCEEEEEECCE
T ss_conf 97989999999974689986997788799999999999999789479998079877899999999998699999999999
Q ss_pred EEEEECC
Q ss_conf 9996147
Q 003573 329 VVLFRGM 335 (810)
Q Consensus 329 iVLYRG~ 335 (810)
+||||++
T Consensus 81 ~VLYR~~ 87 (104)
T 1rq8_A 81 IVIYRES 87 (104)
T ss_dssp EEEEECC
T ss_pred EEEEECC
T ss_conf 9999578
No 2
>1rq8_A Conserved hypothetical protein; structural genomics, SAV1595, YHBY, UPF0044, unknown function; NMR {Staphylococcus aureus} SCOP: d.68.4.1
Probab=1.00 E-value=1 Score=186.34 Aligned_cols=97 Identities=25% Similarity=0.418 Sum_probs=92.2
Q ss_pred CCCHHHHHHHHHCCCCCCCEEEECCCCCCHHHHHHHHHHHHHCCEEEEEECCCCHHHHHHHHHHHHHHHCCEEEEEEECC
Q ss_conf 99999999999702699962760778889889999999987176288997499988799999999988399899732169
Q 003573 660 TITNEERFLLRKMGLSMKPYLLLGRRGIYDGTIENMHLHWKYRELVKIIVKGKSFAQVKQIAISLEAESGGVLVSLDKTP 739 (810)
Q Consensus 660 ~LT~eERk~LRKlGlkLkpvV~IGKrGVtdgVIeeIh~alk~hELVKIkv~q~~~ed~keiA~~Le~~TGgiLVqvik~~ 739 (810)
|||++||++||++||+++|+|+|||+|||++|+++|+.+|++||||||+|++++.++++++|+.|++.|||++||+|
T Consensus 1 mLt~kqr~~LR~~ah~Lkpvv~IGK~GlTe~vi~ei~~aL~~hELIKVkvl~~~~~d~~e~a~~la~~t~a~vVq~I--- 77 (104)
T 1rq8_A 1 MLTGKQKRYLRSLAHNIDPIFQIGKGGINENMIKQIDDTLENRELIKVHVLQNNFDDKKELAETLSEATRSELVQVI--- 77 (104)
T ss_dssp CCCHHHHHHHHHHTTSSCCSCEECSSSCCHHHHHHHHHHHHHSSEEEEEECCCCHHHHHHHHHHHHHHHTEEEEEEE---
T ss_pred CCCHHHHHHHHHHHCCCCCEEEECCCCCCHHHHHHHHHHHHHCCCEEEEEECCCHHHHHHHHHHHHHHHCCEEEEEE---
T ss_conf 97989999999974689986997788799999999999999789479998079877899999999998699999999---
Q ss_pred CCCEEEEECCCCCCCCCCCCCC
Q ss_conf 7819999806899999657876
Q 003573 740 KGIAIIVYRGKNYVRPLKLRPQ 761 (810)
Q Consensus 740 iG~tIILYRGKNY~rP~~l~P~ 761 (810)
|+++||||++. ..|.+.+|-
T Consensus 78 -G~~~VLYR~~~-~~~~i~~~~ 97 (104)
T 1rq8_A 78 -GSMIVIYRESK-ENKEIELPL 97 (104)
T ss_dssp -TTEEEEEECCC-SCCSCCCC-
T ss_pred -CCEEEEEECCC-CCCCEECCC
T ss_conf -99999995788-788523451
No 3
>1jo0_A Hypothetical protein HI1333; structural genomics, YHBY_HAEI structure 2 function project, S2F, unknown function; 1.37A {Haemophilus influenzae} SCOP: d.68.4.1 PDB: 1ln4_A
Probab=1.00 E-value=1 Score=185.44 Aligned_cols=87 Identities=17% Similarity=0.272 Sum_probs=52.8
Q ss_pred CCCHHHHHHHHHHHHCCCCEEEECCCCCCHHHHHHHHHHHHHCCEEEEEECCCCHHHHHHHHHHHHHHHCCEEEEEECCE
Q ss_conf 99989999999832069870771799988999999999864189077995289857699999999988398599798668
Q 003573 249 MIPEHELQRLRNISLRMLERTKVGSAGITQALVDSIHEKWKLDEVVKLKFEEPHSLQMKRTHEILERRTGGLVIWRSGSS 328 (810)
Q Consensus 249 tLT~kErr~LRklAh~LkpvV~IGKaGVTd~VVeeIh~alk~rELVKVKv~~~~~~dmk~v~e~LEekTGG~VV~rIG~v 328 (810)
+||++|+++||++||+++|+|+|||+|||++|+++|+++|++||||||+|.+++..+++++++.|+++|||++||+||++
T Consensus 2 ~Lt~kqr~~Lr~~ah~l~pvv~IGk~GlT~~vi~ei~~aL~~~ELIKVkvl~~~~~~~~e~a~~la~~t~a~~Vq~IG~~ 81 (98)
T 1jo0_A 2 TLSTKQKQFLKGLAHHLNPVVMLGGNGLTEGVLAEIENALNHHELIKVKVAGADRETKQLIINAIVRETKAAQVQTIGHI 81 (98)
T ss_dssp CCCHHHHHHHHHHHTTBCCSEEECTTCSCHHHHHHHHHHHHHHSEEEEEETTCCHHHHHHHHHHHHHHHCCEEEEEETTE
T ss_pred CCCHHHHHHHHHHHCCCCCEEEECCCCCCHHHHHHHHHHHHHCCEEEEEEECCCHHHHHHHHHHHHHHHCCEEEEEECCE
T ss_conf 89989999999975479986997787799999999999999779279998179877899999999999699999999999
Q ss_pred EEEEECC
Q ss_conf 9996147
Q 003573 329 VVLFRGM 335 (810)
Q Consensus 329 iVLYRG~ 335 (810)
+||||++
T Consensus 82 ~vLyR~~ 88 (98)
T 1jo0_A 82 LVLYRPS 88 (98)
T ss_dssp EEEECCC
T ss_pred EEEECCC
T ss_conf 9998069
No 4
>1jo0_A Hypothetical protein HI1333; structural genomics, YHBY_HAEI structure 2 function project, S2F, unknown function; 1.37A {Haemophilus influenzae} SCOP: d.68.4.1 PDB: 1ln4_A
Probab=1.00 E-value=1 Score=182.31 Aligned_cols=96 Identities=20% Similarity=0.371 Sum_probs=90.4
Q ss_pred CCCHHHHHHHHHCCCCCCCEEEECCCCCCHHHHHHHHHHHHHCCEEEEEECCCCHHHHHHHHHHHHHHHCCEEEEEEECC
Q ss_conf 99999999999702699962760778889889999999987176288997499988799999999988399899732169
Q 003573 660 TITNEERFLLRKMGLSMKPYLLLGRRGIYDGTIENMHLHWKYRELVKIIVKGKSFAQVKQIAISLEAESGGVLVSLDKTP 739 (810)
Q Consensus 660 ~LT~eERk~LRKlGlkLkpvV~IGKrGVtdgVIeeIh~alk~hELVKIkv~q~~~ed~keiA~~Le~~TGgiLVqvik~~ 739 (810)
.||++||++||++||+++|+|+||++|||++|+.+|+.||++||||||+|++++.++++++|+.|++.|||++||+|
T Consensus 2 ~Lt~kqr~~Lr~~ah~l~pvv~IGk~GlT~~vi~ei~~aL~~~ELIKVkvl~~~~~~~~e~a~~la~~t~a~~Vq~I--- 78 (98)
T 1jo0_A 2 TLSTKQKQFLKGLAHHLNPVVMLGGNGLTEGVLAEIENALNHHELIKVKVAGADRETKQLIINAIVRETKAAQVQTI--- 78 (98)
T ss_dssp CCCHHHHHHHHHHHTTBCCSEEECTTCSCHHHHHHHHHHHHHHSEEEEEETTCCHHHHHHHHHHHHHHHCCEEEEEE---
T ss_pred CCCHHHHHHHHHHHCCCCCEEEECCCCCCHHHHHHHHHHHHHCCEEEEEEECCCHHHHHHHHHHHHHHHCCEEEEEE---
T ss_conf 89989999999975479986997787799999999999999779279998179877899999999999699999999---
Q ss_pred CCCEEEEECCCCCCCCCCCCCC
Q ss_conf 7819999806899999657876
Q 003573 740 KGIAIIVYRGKNYVRPLKLRPQ 761 (810)
Q Consensus 740 iG~tIILYRGKNY~rP~~l~P~ 761 (810)
|+++||||++.. |.+.+|.
T Consensus 79 -G~~~vLyR~~~~--~~i~lp~ 97 (98)
T 1jo0_A 79 -GHILVLYRPSEE--AKIQLPR 97 (98)
T ss_dssp -TTEEEEECCCSS--CCBCCCC
T ss_pred -CCEEEEECCCCC--CCCCCCC
T ss_conf -999999806998--7767989
No 5
>3ka5_A Ribosome-associated protein Y (PSRP-1); structural genomics, PSI-2, protein structure initiative; 1.80A {Clostridium acetobutylicum}
Probab=1.00 E-value=1 Score=15.85 Aligned_cols=49 Identities=12% Similarity=0.112 Sum_probs=30.1
Q ss_pred CEEEEEECCCCHHHHHHHHHHHHHHHCCEEEEEE---CCEEEEEECCCCCCC
Q ss_conf 9077995289857699999999988398599798---668999614798998
Q 003573 292 EVVKLKFEEPHSLQMKRTHEILERRTGGLVIWRS---GSSVVLFRGMAYKLP 340 (810)
Q Consensus 292 ELVKVKv~~~~~~dmk~v~e~LEekTGG~VV~rI---G~viVLYRG~nY~~p 340 (810)
++|+.|-....++..++|+.+++.--.--+|-+- |.+-|+||.++.++-
T Consensus 1 ~iVr~K~~~~kpMsveEAv~qmel~gh~F~vF~n~etg~~nVVYRR~dG~yG 52 (65)
T 3ka5_A 1 EIVKTKRFAIKPMSEEEAVLEMELLGHNFFVFQNGDSNEVNVVYKRKDGNYG 52 (65)
T ss_dssp CEEEEECSCCSCBCHHHHHHHHHHHTCSEEEEEETTTTEEEEEEECTTSCEE
T ss_pred CEEEEEEECCCCCCHHHHHHHHHHCCCCEEEEEECCCCCEEEEEEECCCCEE
T ss_conf 9599986057989999999998707993999981789979899996899799
No 6
>2e6x_A TT1592, hypothetical protein TTHA1281; unknown function protein, NPPSFA, national project on protei structural and functional analyses; 2.00A {Thermus thermophilus}
Probab=1.00 E-value=1 Score=15.79 Aligned_cols=17 Identities=29% Similarity=0.632 Sum_probs=14.1
Q ss_pred HHHHHHHCCEEEEEECC
Q ss_conf 99998839859979866
Q 003573 311 EILERRTGGLVIWRSGS 327 (810)
Q Consensus 311 e~LEekTGG~VV~rIG~ 327 (810)
..+-++.|+.+|||||.
T Consensus 3 ~d~L~~LG~~LvWRiGk 19 (69)
T 2e6x_A 3 KDLLDKLGQHLVWRMGR 19 (69)
T ss_dssp HHHHHHTTCCEEEEEEE
T ss_pred HHHHHHHHCEEEEEECC
T ss_conf 78999974102786435
No 7
>3lyv_A Ribosome-associated factor Y; ribosomal protein S30AE family, structural genomics, PSI-2, structure initiative; 2.70A {Streptococcus pyogenes}
Probab=1.00 E-value=1 Score=15.39 Aligned_cols=49 Identities=18% Similarity=0.274 Sum_probs=28.6
Q ss_pred CEEEEEECCCCHHHHHHHHHHHHHHHCCEEEEEE---CCEEEEEECCCCCCC
Q ss_conf 9077995289857699999999988398599798---668999614798998
Q 003573 292 EVVKLKFEEPHSLQMKRTHEILERRTGGLVIWRS---GSSVVLFRGMAYKLP 340 (810)
Q Consensus 292 ELVKVKv~~~~~~dmk~v~e~LEekTGG~VV~rI---G~viVLYRG~nY~~p 340 (810)
++|+.|-....+...++|+.+++---.--+|-+- |.+-|+||.++.++-
T Consensus 2 ~iVr~K~~~~kpMsveEAv~qMel~gh~F~vF~n~etg~~nVVYRR~dG~yG 53 (66)
T 3lyv_A 2 QVVRTKNVTLKPMDVEEARLQMELLGHDFFIYTDSEDGATNILYRREDGNLG 53 (66)
T ss_dssp CCCCCCCCCCCEECHHHHHHHHHTTTCSEEEEEETTTCSEEEEEECTTSSEE
T ss_pred EEEEEEECCCCCCCHHHHHHHHHCCCCCEEEEEECCCCCEEEEEEECCCCEE
T ss_conf 1799987057989999999998707993999981789989899997899799
No 8
>3k2t_A LMO2511 protein; listeria monocytogenes,binding, structural genomics, PSI-2, protein structure initiative; 2.40A {Listeria monocytogenes}
Probab=1.00 E-value=1 Score=15.15 Aligned_cols=47 Identities=6% Similarity=0.104 Sum_probs=22.1
Q ss_pred EEEEEECCCCHHHHHHHHHHHHHHHCCEEEEE---ECCEEEEEECCCCCC
Q ss_conf 07799528985769999999998839859979---866899961479899
Q 003573 293 VVKLKFEEPHSLQMKRTHEILERRTGGLVIWR---SGSSVVLFRGMAYKL 339 (810)
Q Consensus 293 LVKVKv~~~~~~dmk~v~e~LEekTGG~VV~r---IG~viVLYRG~nY~~ 339 (810)
+|+.|-....+...++|+.+++.--.--++-+ .|.+-|+||.++.++
T Consensus 2 ivr~K~~~~kpmsveEAv~qmel~gh~F~vF~n~~t~~~nVvYrR~dG~y 51 (57)
T 3k2t_A 2 IVRTKQFSLKPMDSEEAVLQMNLLGHSFYVYTDAETNGTNIVYSRKDGKY 51 (57)
T ss_dssp CCCCCC---CCBCHHHHHHHHHHHTCSEEEEEBSSSCCEEEEEECTTSCE
T ss_pred EEEEEECCCCCCCHHHHHHHHHHCCCCEEEEECCCCCCEEEEEEECCCCE
T ss_conf 38998626798999999999872799599998078898989999679979
No 9
>2j01_J 50S ribosomal protein L10; ribosome, tRNA, paromomycin, mRNA, translation; 2.8A {Thermus thermophilus} PDB: 2j03_J 3d5b_J 3d5d_J 3i8i_Y 3kir_J 3kit_J 3kiw_J 3kiy_J 3mrz_I 3ms1_I 3pyt_I 3pyr_I 3pyo_I 3pyv_I
Probab=1.00 E-value=1 Score=15.02 Aligned_cols=30 Identities=20% Similarity=0.338 Sum_probs=26.6
Q ss_pred CCCCHHHHHHHHHHHHCCCCCEEECCCCHH
Q ss_conf 999938899999952029990672256324
Q 003573 446 PGLRDCETTEFRRLARKTPPHFALGRNREL 475 (810)
Q Consensus 446 ~~Ls~~E~t~LRk~ar~lpph~aLGRn~~~ 475 (810)
.+|+..+++.||+..|.--..|.++||...
T Consensus 30 ~gltv~~~~~LR~~lr~~g~~~~V~KNtL~ 59 (173)
T 2j01_J 30 QGLPAKETHALRQALKQNGARLFVAKNTLI 59 (173)
T ss_pred CCCCHHHHHHHHHHHHHCCCEEEEEHHHHH
T ss_conf 899889999999999977968999616899
No 10
>3sbx_A Putative uncharacterized protein; structural genomics, seattle structural genomics center for infectious disease, ssgcid; HET: AMP; 2.50A {Mycobacterium marinum M}
Probab=1.00 E-value=1 Score=14.95 Aligned_cols=33 Identities=18% Similarity=0.240 Sum_probs=24.7
Q ss_pred HHHCCCCCCCEEEECCCCCCHHHHHHHHHHHHHC
Q ss_conf 9970269996276077888988999999998717
Q 003573 669 LRKMGLSMKPYLLLGRRGIYDGTIENMHLHWKYR 702 (810)
Q Consensus 669 LRKlGlkLkpvV~IGKrGVtdgVIeeIh~alk~h 702 (810)
+..+|.+-+|+++++.+|.++.++.-++ ++...
T Consensus 131 ~~qlg~~~kPvvlln~~gfw~~l~~~l~-~~~~~ 163 (189)
T 3sbx_A 131 EGYLGMHDKSIVVLDPWGHFDGLRAWLS-ELADT 163 (189)
T ss_dssp HHHTTSCCCCEEEECTTCTTHHHHHHHH-HHHHT
T ss_pred HHHHCCCCCCEEEECCCCCCHHHHHHHH-HHHHC
T ss_conf 9983256998899658764468999999-99877
Done!