Your job contains 1 sequence.
>003574
MSDEGEKTCPLCAEEMDLTDQQLKPCKCGYEICVWCWHHIMDMAEKEETEGRCPACRSPY
DKEKIVGMAAKCESMERKMKSQKSKTKSSEGKKQQLSSVRVIQRNLVYIVGLPLNLGDED
LLQRREYFGQYGKVLKVSMSRTAAGVIQQFPNNTCSVYITYSKEEEAVRCIQSVHGFVLE
GKSLKACFGTTKYCHAWLRNVPCTNPDCLYLHEVGSQEDSFTKDEIISAYTRSRVQQITG
TTNNLQRRSGNVLPPPFDDYCHINSVSTAKPSVKNAANNTASISKDPIPNGSSARSVALP
AAASWGMRASNQQSVATSACSNGPSKQRPDTVGGALAFSSAVANTPSVSTLHVDVVKRPT
VHEDSQITDSKSKSDISKPSRQHFGSEPPTPNGEPASVSLSNQASCPTKYTDKSLNMPPN
VIHSSDTTDHSCLSGPEKEENVTADVKMQGLCSDVSAMSIDRNATNEHSGVARASSALPD
HGMMKLPRNQGLQPYNADLCREPLMSPETGKSITSKNDAFVSREPFDWRTDPTQAATDAS
PQEEEDVLSFDNQRLKDPEVVCRSNYLPKSANSLHVTNHSRSHSFQNSDALTASNLNSDP
QFVDNSVNDGSHPHLSSSSLKSNGYPEKLARNTSGPGRAVENAFLLSNEGQRMPRELQGD
ANIDAAVDTGENSIISNILSMDFDTWDDPLALPQNLAKLLSEPEKEPSSLKMSSSWKGHN
HNQSRFSFARQEESRSHTFDNERSFSGFIQQPKSHSFNQDFAGNRDPLLDKLGLRNGFHP
SSFEESDNFSSNHAVFSPNKLSGEYHYSIN
The BLAST search returned 2 gene products which did not match your query constraints. Please see the full BLAST report below for the details.
BLASTP 2.0MP-WashU [04-May-2006] [linux26-i686-ILP32F64 2006-05-09T11:47:08]
Copyright (C) 1996-2006 Washington University, Saint Louis, Missouri USA.
All Rights Reserved.
Reference: Gish, W. (1996-2006) http://blast.wustl.edu
Query= 003574
(810 letters)
Database: go_20130330-seqdb.fasta
368,745 sequences; 169,044,731 total letters.
Searching....10....20....30....40....50....60....70....80....90....100% done
Smallest
Sum
High Probability
Sequences producing High-scoring Segment Pairs: Score P(N) N
TAIR|locus:2085617 - symbol:AT3G45630 species:3702 "Arabi... 1366 6.6e-162 2
TAIR|locus:2056563 - symbol:AT2G28540 species:3702 "Arabi... 1124 2.0e-132 2
POMBASE|SPAC16C9.04c - symbol:mot2 "CCR4-Not complex subu... 502 6.2e-50 2
UNIPROTKB|D4ADF8 - symbol:Cnot4 "RCG28297" species:10116 ... 494 1.2e-48 2
UNIPROTKB|F1MWA7 - symbol:CNOT4 "Uncharacterized protein"... 489 2.3e-48 2
UNIPROTKB|E2QXU7 - symbol:CNOT4 "Uncharacterized protein"... 488 2.9e-48 2
UNIPROTKB|O95628 - symbol:CNOT4 "CCR4-NOT transcription c... 488 2.9e-48 2
UNIPROTKB|E2QXU6 - symbol:CNOT4 "Uncharacterized protein"... 484 3.3e-48 2
MGI|MGI:1859026 - symbol:Cnot4 "CCR4-NOT transcription co... 494 8.0e-47 1
UNIPROTKB|I3LC53 - symbol:LOC100622832 "Uncharacterized p... 484 1.1e-45 1
DICTYBASE|DDB_G0275005 - symbol:DDB_G0275005 "putative CC... 385 1.4e-45 5
UNIPROTKB|F1MAD6 - symbol:Cnot4 "Protein Cnot4" species:1... 494 2.1e-45 2
ZFIN|ZDB-GENE-090313-262 - symbol:si:dkey-230e6.2 "si:dke... 476 2.2e-45 3
RGD|1310318 - symbol:Cnot4 "CCR4-NOT transcription comple... 490 6.7e-45 2
UNIPROTKB|F8VQP3 - symbol:CNOT4 "CCR4-NOT transcription c... 488 7.2e-45 2
UNIPROTKB|E2QXU8 - symbol:CNOT4 "Uncharacterized protein"... 484 8.7e-45 2
ZFIN|ZDB-GENE-040426-1164 - symbol:zgc:63566 "zgc:63566" ... 495 1.7e-44 2
UNIPROTKB|Q5ZJC9 - symbol:CNOT4 "Uncharacterized protein"... 483 5.9e-44 2
UNIPROTKB|E1C4B3 - symbol:CNOT4 "Uncharacterized protein"... 478 2.7e-43 2
FB|FBgn0051716 - symbol:Cnot4 "Cnot 4 homologue" species:... 447 6.1e-39 1
WB|WBGene00003827 - symbol:ntl-4 species:6239 "Caenorhabd... 437 7.0e-39 2
CGD|CAL0000791 - symbol:NOT4 species:5476 "Candida albica... 363 1.2e-30 1
UNIPROTKB|Q59UI5 - symbol:NOT4 "Potential mRNA deadenylas... 363 1.2e-30 1
SGD|S000000870 - symbol:MOT2 "Ubiquitin-protein ligase su... 322 7.9e-26 1
TAIR|locus:2027262 - symbol:AT1G74870 species:3702 "Arabi... 161 7.2e-09 1
TAIR|locus:2097930 - symbol:AT3G48070 species:3702 "Arabi... 156 4.8e-08 1
TAIR|locus:2170708 - symbol:AT5G62910 species:3702 "Arabi... 155 5.2e-08 1
>TAIR|locus:2085617 [details] [associations]
symbol:AT3G45630 species:3702 "Arabidopsis thaliana"
[GO:0000166 "nucleotide binding" evidence=IEA] [GO:0003676 "nucleic
acid binding" evidence=IEA] [GO:0003723 "RNA binding" evidence=ISS]
[GO:0005634 "nucleus" evidence=ISM] [GO:0008270 "zinc ion binding"
evidence=IEA] [GO:0009506 "plasmodesma" evidence=IDA]
InterPro:IPR001841 InterPro:IPR000504 InterPro:IPR012677
Pfam:PF00076 PROSITE:PS50089 PROSITE:PS50102 SMART:SM00184
SMART:SM00360 GO:GO:0009506 EMBL:CP002686 GenomeReviews:BA000014_GR
GO:GO:0000166 GO:GO:0046872 GO:GO:0008270 Gene3D:3.30.70.330
GO:GO:0003676 KO:K10643 Gene3D:3.30.40.10 InterPro:IPR013083
eggNOG:COG5175 EMBL:AL138657 HSSP:O95628 HOGENOM:HOG000085071
IPI:IPI00541447 PIR:T47503 RefSeq:NP_190149.1 UniGene:At.36006
ProteinModelPortal:Q9M1E4 SMR:Q9M1E4 IntAct:Q9M1E4
MINT:MINT-1366149 PaxDb:Q9M1E4 PRIDE:Q9M1E4
EnsemblPlants:AT3G45630.1 GeneID:823705 KEGG:ath:AT3G45630
TAIR:At3g45630 InParanoid:Q9M1E4 OMA:KPSAVEN PhylomeDB:Q9M1E4
ProtClustDB:CLSN2684762 Genevestigator:Q9M1E4 Uniprot:Q9M1E4
Length = 989
Score = 1366 (485.9 bits), Expect = 6.6e-162, Sum P(2) = 6.6e-162
Identities = 315/612 (51%), Positives = 378/612 (61%)
Query: 1 MSDEGEKTCPLCAEEMDLTDQQLKPCKCGYEICVWCWHHIMDMAEKEETEGRCPACRSPY 60
MSD GEKTCPLCAEEMDLTDQQLKPCKCGY+ICVWCWHHIMDMAEK+++EGRCPACR+PY
Sbjct: 1 MSDYGEKTCPLCAEEMDLTDQQLKPCKCGYQICVWCWHHIMDMAEKDQSEGRCPACRTPY 60
Query: 61 DKEKIVGMAAKCESMERXXXXXXXXXXXXXXXXXX----LSSVRVIQRNLVYIVGLPLNL 116
DKEKIVGM E + L+SVRV+QRNLVYIVGLPLNL
Sbjct: 61 DKEKIVGMTVDQERLASEGNMDRKKIQKSKPKSSDGRKPLTSVRVVQRNLVYIVGLPLNL 120
Query: 117 GDEDLLQRREYFGQYGKVLKVSMSRTAAGVIQQFPNNTCSVYITYSKEEEAVRCIQSVHG 176
DEDLLQR+EYFGQYGKVLKVSMSRTA G+IQQFPNNTCSVYITY KEEEA+RCIQSVHG
Sbjct: 121 ADEDLLQRKEYFGQYGKVLKVSMSRTATGLIQQFPNNTCSVYITYGKEEEAIRCIQSVHG 180
Query: 177 FVLEGKSLKACFGTTKYCHAWLRNVPCTNPDCLYLHEVGSQEDSFTKDEIISAYTRSRVQ 236
F+L+GK+LKACFGTTKYCHAWLRNV C N DCLYLHEVGSQEDSFTKDEIISA+TR VQ
Sbjct: 181 FILDGKALKACFGTTKYCHAWLRNVACNNQDCLYLHEVGSQEDSFTKDEIISAHTR--VQ 238
Query: 237 QITGTTNNLQRRSGNVLPPPFDDYCHINSVSTAKPSVKNAANNTASISKDPIPNGSSARS 296
QITG TN +Q RSG++LPPP D Y + ST P K ++ + S K P+GSS +S
Sbjct: 239 QITGATNTMQYRSGSMLPPPLDAYT--SDSSTGNPIAKVPSSTSVSAPKSSPPSGSSGKS 296
Query: 297 VALPAAASWGMRASNQQSVATSACSNGP-SKQRPDTVGGALAFSSAV---ANTPSVSTLH 352
ALPAAASWG R +NQ S+ATSA SNG QR + G LA S+ V AN P VS+ +
Sbjct: 297 TALPAAASWGARLTNQHSLATSALSNGSLDNQRSTSENGTLATSTVVTKAANGP-VSSSN 355
Query: 353 VDVVKRPTVHEXXXXXXXXXXXXXXXXXRQHFGSEPPT-----PNGEPASVSLSNQASCP 407
+ K P + E +Q +P + PN +P+S NQ SC
Sbjct: 356 -SLQKAP-LKEEIQSLAEKSKPGVLKPLQQKIVLDPESKRTTSPNRDPSS----NQISC- 408
Query: 408 TKYTDKSLNMPPNVIHSSDTTDHSCLSGPEKEENVTADVKMQGLCSDVSAMSIDRNATNE 467
+ S N VI ++S E E+V DV L +DV+ M I N+ +E
Sbjct: 409 --LVESSYNS--RVIDKPSAVENSLEHTSEIAEDVF-DVGK--LSADVAWMGITTNSRDE 461
Query: 468 HSGVARASSALPDHGMMKLPRNQGLQPYNADLCREPLMSPETGKSITSKNDAFVSREPFD 527
GV D G + N +Q N + CR+ + ++ S N SR +D
Sbjct: 462 TPGVPVVIGTHCDLGSITQSDND-VQ--NLEQCRKQSPTNTYAEADISLNGIHGSRPEWD 518
Query: 528 WRTDPTQAATDAS-PQEEEDVLSFDNQRLKDPEVVCRSNYLPKSANSLHVTNHSRSHSFQ 586
WR+ Q+ D P E D SF+N R E V S S+ S+ +NH S SFQ
Sbjct: 519 WRSG-LQSQIDVKEPLEVNDFSSFNNNRRGIAEAVSHSTSKFSSSISILDSNHLASRSFQ 577
Query: 587 NSDALTASNLNS 598
N + T+ ++S
Sbjct: 578 NRE--TSCGMDS 587
Score = 232 (86.7 bits), Expect = 6.6e-162, Sum P(2) = 6.6e-162
Identities = 54/112 (48%), Positives = 69/112 (61%)
Query: 667 VDTGENSIISNILSMDFDTWDDPLALPQNLAKLLSEPEKEPSSLKMSSSWKGHNHNQSRF 726
+ E+ IISNIL DFD WD+ L N AKLL + + S+L+ S+ K HN +QSRF
Sbjct: 627 IQNTEDDIISNIL--DFDPWDESLTSQHNFAKLLGQSDHRASTLESSNLLKQHN-DQSRF 683
Query: 727 SFARQEESRSHTFDNERSFSGFIQQPKSHSFNQDFAGNRDPLLDKLGLRNGF 778
SFAR EES S +DN RS+S + Q + Q+F NRD DKLG +NGF
Sbjct: 684 SFARHEESNSQAYDN-RSYSIYGQLSRDQPL-QEFGANRDMYQDKLGSQNGF 733
>TAIR|locus:2056563 [details] [associations]
symbol:AT2G28540 species:3702 "Arabidopsis thaliana"
[GO:0000166 "nucleotide binding" evidence=IEA] [GO:0003676 "nucleic
acid binding" evidence=IEA] [GO:0005634 "nucleus" evidence=ISM]
[GO:0008270 "zinc ion binding" evidence=IEA] InterPro:IPR001841
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50089
PROSITE:PS50102 SMART:SM00360 EMBL:CP002685 GO:GO:0000166
GO:GO:0008270 Gene3D:3.30.70.330 GO:GO:0003676 KO:K10643
Gene3D:3.30.40.10 InterPro:IPR013083 EMBL:AK228764 IPI:IPI00540319
RefSeq:NP_001031437.2 UniGene:At.38609 ProteinModelPortal:Q0WQD5
SMR:Q0WQD5 PRIDE:Q0WQD5 EnsemblPlants:AT2G28540.2 GeneID:817402
KEGG:ath:AT2G28540 TAIR:At2g28540 HOGENOM:HOG000085071
InParanoid:Q0WQD5 OMA:RIIANIM PhylomeDB:Q0WQD5
ProtClustDB:CLSN2681703 Genevestigator:Q0WQD5 Uniprot:Q0WQD5
Length = 960
Score = 1124 (400.7 bits), Expect = 2.0e-132, Sum P(2) = 2.0e-132
Identities = 212/365 (58%), Positives = 266/365 (72%)
Query: 1 MSDEGEKTCPLCAEEMDLTDQQLKPCKCGYEICVWCWHHIMDMAEKEETEGRCPACRSPY 60
M+++GEKTCPLC EEMDLTDQ LKPCKCGY+ICVWCWHHI++MAEK++TEGRCPACR+ Y
Sbjct: 1 MNEKGEKTCPLCTEEMDLTDQHLKPCKCGYQICVWCWHHIIEMAEKDKTEGRCPACRTRY 60
Query: 61 DKEKIVGMAAKCESMERXXXXXXXXXXXX----XXXXXXLSSVRVIQRNLVYIVGLPLNL 116
DKEKIVGM CE + L+ VRVIQRNLVY++ LP +L
Sbjct: 61 DKEKIVGMTVSCERLVAEFYIDRKKSQKAKPKPAEGRKDLTGVRVIQRNLVYVMSLPFDL 120
Query: 117 GDEDLLQRREYFGQYGKVLKVSMSRTAAGVIQQFPNNTCSVYITYSKEEEAVRCIQSVHG 176
DED+ QRREYFGQYGKV+KV+MSRTAAG +QQFPNNTCSVYITYSKEEEA+RCI+SVHG
Sbjct: 121 ADEDMFQRREYFGQYGKVVKVAMSRTAAGAVQQFPNNTCSVYITYSKEEEAIRCIRSVHG 180
Query: 177 FVLEGKSLKACFGTTKYCHAWLRNVPCTNPDCLYLHEVGSQEDSFTKDEIISAYTRSRVQ 236
F+L+G++LKACFGT KYCHAWLRN+PC+N +CLYLHE+G+QEDSF+KDE ISA+ R VQ
Sbjct: 181 FILDGRNLKACFGTMKYCHAWLRNMPCSNAECLYLHEIGAQEDSFSKDETISAHMRKMVQ 240
Query: 237 QITGTTNNLQRRSGNVLPPPFDDYCHINSVSTAKPSVKNAANNTASISKDPIPNGSSARS 296
ITG ++ RRSG++LPPP DDY +++ S+ + K NN S +K+ PN S++ S
Sbjct: 241 DITGWRDHYVRRSGSMLPPPVDDY--VDNESSTRIIPKVVLNNVHSAAKNSPPNDSNSHS 298
Query: 297 VALPAAASWGMRASNQQSVATSACSNGPSKQRPDTVGGALAFSSAVANTPSVSTLHVDVV 356
V LPA A WGM +S V + S P + + TV SSAVA P+ + D +
Sbjct: 299 VTLPAGAMWGMHSS----VPNTPSSREPLRDKSATV------SSAVAINPTQISSRSDEL 348
Query: 357 KRPTV 361
++P +
Sbjct: 349 RKPAL 353
Score = 195 (73.7 bits), Expect = 2.0e-132, Sum P(2) = 2.0e-132
Identities = 105/441 (23%), Positives = 180/441 (40%)
Query: 318 SACSNGPSKQRPDTVGGALAFSSAVANTPSVSTLHVDVVKRPTVHEXXXXXXXXXXXXXX 377
S+ N PS + P A SSAVA P+ + D +++P +
Sbjct: 311 SSVPNTPSSREPLRDKSATV-SSAVAINPTQISSRSDELRKPALE---AAGGNVLKPQSL 366
Query: 378 XXXRQHFGSEPPTPNGEPASVSLSNQASCPTKYTDKSLNMPPNVIHSSDTTDHSCLSGPE 437
+ F P + +S S + ++++ P + +D +H+ LS
Sbjct: 367 LDGKTDF---PELSSSNKTQISNSRNVVSASVDNSRAISEPSDC---TDLPEHTSLSNGN 420
Query: 438 KEENVTADVKMQGLCSDVSAMSIDRNATNEHSGVARASSALPDHGMMKLPRNQGLQPYNA 497
K N ++Q CS+V ++ D H G+ R+ + DH +K + Q Y
Sbjct: 421 KMINR----RIQNGCSNVVSVDADSVVDGYH-GITRSDKSHIDHASIKPTLTEVSQDYLQ 475
Query: 498 DLCREPL-MSPETGKSITSKNDAFVSREPFDWRTD-PTQAATDASPQEEEDVLSFDNQRL 555
EP + P T+ N+ VSRE + T + T + E+D+ F QRL
Sbjct: 476 RCVDEPREVQPLQKSGRTNANEVGVSREEVNRGTSLMSPLGTGHYLEAEDDISLFYRQRL 535
Query: 556 KDPEVV-CRSNYLPKSANSLHVTNHSRSHSFQNSDALTASNLNSDPQFVDNSVNDGXXXX 614
KDPEV+ C+SN + +N + + + + S+ + +++G
Sbjct: 536 KDPEVLSCQSNGFLRPSNCMQPCSSQYKAEHDETRTVFGSSYSDSRGSNIAPISNGYTEM 595
Query: 615 XXXXXXXXNG-------YPEKLARNTSGPGRAVENAFLLSNEGQRMPRELQGDANIDAAV 667
NG P+K AR+T P +EN F+ S+E P E+
Sbjct: 596 PLSEPNQLNGSLNHSILVPDK-ARDTQ-P---IENCFVDSHES---PSEI---------- 637
Query: 668 DTGENSIISNILSMDFDTWDDPLALPQNLAKLLSEPEKEPSSLKMSSSWKGH-NHNQSRF 726
++ II+NI+S+D D + L P N A E ++E SLK++SS K N ++ F
Sbjct: 638 ---DDRIIANIMSLDLDEY---LTSPHNYANPFGESDEEARSLKLASSSKVEDNQSRFSF 691
Query: 727 SFARQEESR---SHTFDNERS 744
+ + + + S+ N+ S
Sbjct: 692 ARQEEPKDQAFDSYNASNQMS 712
Score = 168 (64.2 bits), Expect = 1.4e-129, Sum P(2) = 1.4e-129
Identities = 50/158 (31%), Positives = 81/158 (51%)
Query: 623 NGYPEKLARNTSGPGRAVENAFLLSNEGQ-RMPRELQGDANIDAAVDTGE--NSIISNIL 679
NGY E + ++ ++ L+ ++ + P E + +D+ E + II+NI+
Sbjct: 590 NGYTEMPLSEPNQLNGSLNHSILVPDKARDTQPIE---NCFVDSHESPSEIDDRIIANIM 646
Query: 680 SMDFDTWDDPLALPQNLAKLLSEPEKEPSSLKMSSSWKGHNHNQSRFSFARQEESRSHTF 739
S+D D + L P N A E ++E SLK++SS K + NQSRFSFARQEE + F
Sbjct: 647 SLDLDEY---LTSPHNYANPFGESDEEARSLKLASSSKVED-NQSRFSFARQEEPKDQAF 702
Query: 740 DNERSFSGFIQQPKSHSFNQDFAGNRDPLLDKLGLRNG 777
D S++ Q + + F Q+ + + P + G NG
Sbjct: 703 D---SYNASNQMSRGNDFYQNSSERQSPNMGMFGTYNG 737
Score = 40 (19.1 bits), Expect = 4.7e-116, Sum P(2) = 4.7e-116
Identities = 12/42 (28%), Positives = 19/42 (45%)
Query: 394 EPASVSLSNQASCPTKYTDKSLNMPPNVIHSSDTTDHSCLSG 435
+P SV S P ++ + + PP SS+ DH + G
Sbjct: 760 KPTSVPRC-PVSAPPGFSVPTPSRPPPPGFSSNGRDHQMIDG 800
>POMBASE|SPAC16C9.04c [details] [associations]
symbol:mot2 "CCR4-Not complex subunit Mot2 (predicted)"
species:4896 "Schizosaccharomyces pombe" [GO:0000289
"nuclear-transcribed mRNA poly(A) tail shortening" evidence=ISO]
[GO:0003723 "RNA binding" evidence=ISM] [GO:0004842
"ubiquitin-protein ligase activity" evidence=ISO] [GO:0005634
"nucleus" evidence=IEA] [GO:0005829 "cytosol" evidence=IDA]
[GO:0006357 "regulation of transcription from RNA polymerase II
promoter" evidence=ISO] [GO:0006368 "transcription elongation from
RNA polymerase II promoter" evidence=ISO] [GO:0006402 "mRNA
catabolic process" evidence=IC] [GO:0008270 "zinc ion binding"
evidence=IEA] [GO:0016567 "protein ubiquitination" evidence=ISO]
[GO:0030014 "CCR4-NOT complex" evidence=ISO] [GO:0030015 "CCR4-NOT
core complex" evidence=NAS] InterPro:IPR001841 InterPro:IPR000504
InterPro:IPR000571 InterPro:IPR003954 InterPro:IPR012677
Pfam:PF00076 PROSITE:PS50089 PROSITE:PS50102 PROSITE:PS50103
SMART:SM00184 SMART:SM00361 PomBase:SPAC16C9.04c Prosite:PS00518
GO:GO:0005829 GO:GO:0005634 EMBL:CU329670 GO:GO:0000166
GO:GO:0046872 GO:GO:0008270 Gene3D:3.30.70.330 GO:GO:0006357
GO:GO:0003723 KO:K10643 Gene3D:3.30.40.10 InterPro:IPR013083
GO:GO:0006368 GO:GO:0004842 GO:GO:0000289 GO:GO:0030015
eggNOG:COG5175 HOGENOM:HOG000248860 OrthoDB:EOG42RHH7 PIR:T37777
RefSeq:NP_593078.1 ProteinModelPortal:Q09818 SMR:Q09818
STRING:Q09818 PRIDE:Q09818 EnsemblFungi:SPAC16C9.04c.1
GeneID:2542325 KEGG:spo:SPAC16C9.04c NextBio:20803386
Uniprot:Q09818
Length = 489
Score = 502 (181.8 bits), Expect = 6.2e-50, Sum P(2) = 6.2e-50
Identities = 98/256 (38%), Positives = 151/256 (58%)
Query: 3 DEGEKTCPLCAEEMDLTDQQLKPCKCGYEICVWCWHHIMDMAEKEETEGRCPACRSPYDK 62
DE + CPLC EE+D++D+ KPC+CGY +C +CWHHI KE+ GRCPACR Y +
Sbjct: 12 DEDDMCCPLCMEEIDISDKNFKPCQCGYRVCRFCWHHI-----KEDLNGRCPACRRLYTE 66
Query: 63 EKIVGMAAKCESME-------RXXXXXXXXXXXXXXXXXXLSSVRVIQRNLVYIVGLPLN 115
E + E + L+++RV+Q+NL Y+ GL
Sbjct: 67 ENVQWRPVTAEEWKMDLHRKNERKKREKERKEVELSNRKHLANIRVVQKNLAYVNGLSPK 126
Query: 116 LGDED---LLQRREYFGQYGKVLKVSMSRTAAGVIQQFPNNTCSVYITYSKEEEAVRCIQ 172
+ +E+ +L+ EYFGQYGK++K+++++ AA N VYITY ++E+A R I
Sbjct: 127 VANEENINVLKGPEYFGQYGKIIKIAINKKAAA---NSANGHVGVYITYQRKEDAARAIA 183
Query: 173 SVHGFVLEGKSLKACFGTTKYCHAWLRNVPCTNPDCLYLHEVGSQEDSFTKDEIISA-YT 231
++ G V +G+ L+A +GTTKYC ++LRN C NP C+YLHE G + DS+TK+++ S +T
Sbjct: 184 AIDGSVSDGRHLRASYGTTKYCTSYLRNQQCPNPSCMYLHEPGDEVDSYTKEDLASLQHT 243
Query: 232 R---SRVQQITGTTNN 244
R ++ + G T++
Sbjct: 244 RPLSTKPNVVNGATHS 259
Score = 41 (19.5 bits), Expect = 6.2e-50, Sum P(2) = 6.2e-50
Identities = 26/104 (25%), Positives = 41/104 (39%)
Query: 265 SVSTAKPSVKNAANNTASISKDPIPNGSSA-----RSVALPAAASWGMRASNQQSVATSA 319
S+ST + A +++ S + +P ++ S ALP A+W A SV
Sbjct: 307 SLSTNNTATSVPAPYSSAASVNVVPGHATTILHHEESSALPPTAAW---AKLSPSVLQER 363
Query: 320 CSNGPSKQRPDTVGGALAFSSAVANTPSVSTLHVDVVKRPTVHE 363
++Q D AL SS + P + L K P+ E
Sbjct: 364 LRAAVNQQPLD----ALKSSSTQTSIPKIQKLKA--AKLPSEEE 401
>UNIPROTKB|D4ADF8 [details] [associations]
symbol:Cnot4 "RCG28297" species:10116 "Rattus norvegicus"
[GO:0000166 "nucleotide binding" evidence=IEA] [GO:0003723 "RNA
binding" evidence=IEA] [GO:0008270 "zinc ion binding" evidence=IEA]
InterPro:IPR001841 InterPro:IPR000504 InterPro:IPR000571
InterPro:IPR012677 PROSITE:PS50089 PROSITE:PS50102 PROSITE:PS50103
SMART:SM00184 SMART:SM00360 RGD:1310318 GO:GO:0000166 GO:GO:0046872
GO:GO:0008270 Gene3D:3.30.70.330 GO:GO:0003723 Gene3D:3.30.40.10
InterPro:IPR013083 EMBL:CH473959 IPI:IPI00373484 UniGene:Rn.203387
Ensembl:ENSRNOT00000014392 Uniprot:D4ADF8
Length = 575
Score = 494 (179.0 bits), Expect = 1.2e-48, Sum P(2) = 1.2e-48
Identities = 120/358 (33%), Positives = 189/358 (52%)
Query: 9 CPLCAEEMDLTDQQLKPCKCGYEICVWCWHHIMDMAEKEETEGRCPACRSPYDKEKIVGM 68
CPLC E +++ D PC CGY+IC +CWH I + + G CPACR PY ++ V
Sbjct: 14 CPLCMEPLEIDDINFFPCTCGYQICRFCWHRI-----RTDENGLCPACRKPYPEDPAVYK 68
Query: 69 AAKCESMERXXXXXXXXXXXXXXXXXX----LSSVRVIQRNLVYIVGLPLNLGDEDLLQR 124
E ++R L+SVRV+Q+NLV++VGL L D ++L+R
Sbjct: 69 PLSQEELQRIKNEKKQKQNERKQKISENRKHLASVRVVQKNLVFVVGLSQRLADPEVLKR 128
Query: 125 REYFGQYGKVLKVSMSRTAAGVIQQFPNNTCSVYITYSKEEEAVRCIQSVHGFVLEGKSL 184
EYFG++GK+ KV ++ + + Q P+ S Y+TY + E+A+R IQ V+ V++G++L
Sbjct: 129 PEYFGKFGKIHKVVINNSTSYAGSQGPS--ASAYVTYIRSEDALRAIQCVNNVVVDGRTL 186
Query: 185 KACFGTTKYCHAWLRNVPCTNPDCLYLHEVGSQEDSFTKDEIISA----YTRSRVQQITG 240
KA GTTKYC +L+N+ C PDC+YLHE+G + SFTK+E+ + Y + +Q++
Sbjct: 187 KASLGTTKYCSYFLKNMQCPKPDCMYLHELGDEAASFTKEEMQAGKHQEYEQKLLQELYK 246
Query: 241 TTNN-LQRRSGNV-----LPPPFDDY-CHINSVSTAKPSVKNAANNTASISKDPIPN--- 290
N LQ +G+V P Y I+ S + S+ N +N+ IS P+
Sbjct: 247 LNPNFLQLSTGSVDKNKNKVTPLQRYDVPIDKPSDSL-SIGNG-DNSQQISNSDTPSPPP 304
Query: 291 GSSARSVALPAAAS-WGMRASNQQSVATSACSNGPSKQRPDTVGGALAFSSAVANTPS 347
G S + +P ++S R+ + +V S + + P+ + L + TPS
Sbjct: 305 GLSKSNPVIPISSSNHSARSPFEGAVTESQSLFSDNFRHPNPIPSGLPPFPSSPQTPS 362
Score = 38 (18.4 bits), Expect = 1.2e-48, Sum P(2) = 1.2e-48
Identities = 13/44 (29%), Positives = 20/44 (45%)
Query: 722 NQSRFSFARQEESRSHTFDNERSFSGFIQQ--P-KSHSFNQDFA 762
+Q S + S SHT + SGF+ P ++S N F+
Sbjct: 427 DQPSLSSTSLQNSSSHTTSAKGPGSGFLHPAAPANANSLNSTFS 470
>UNIPROTKB|F1MWA7 [details] [associations]
symbol:CNOT4 "Uncharacterized protein" species:9913 "Bos
taurus" [GO:0003723 "RNA binding" evidence=IEA] [GO:0008270 "zinc
ion binding" evidence=IEA] [GO:0000166 "nucleotide binding"
evidence=IEA] InterPro:IPR001841 InterPro:IPR000504
InterPro:IPR000571 InterPro:IPR012677 PROSITE:PS50089
PROSITE:PS50102 PROSITE:PS50103 SMART:SM00184 SMART:SM00360
GO:GO:0000166 GO:GO:0046872 GO:GO:0008270 Gene3D:3.30.70.330
GO:GO:0003723 Gene3D:3.30.40.10 InterPro:IPR013083
GeneTree:ENSGT00390000000068 OMA:KCRICPT EMBL:DAAA02011636
EMBL:DAAA02011637 EMBL:DAAA02011638 EMBL:DAAA02011639
IPI:IPI00708734 UniGene:Bt.26972 Ensembl:ENSBTAT00000023825
Uniprot:F1MWA7
Length = 642
Score = 489 (177.2 bits), Expect = 2.3e-48, Sum P(2) = 2.3e-48
Identities = 120/361 (33%), Positives = 190/361 (52%)
Query: 9 CPLCAEEMDLTDQQLKPCKCGYEICVWCWHHIMDMAEKEETEGRCPACRSPYDKEKIVGM 68
CPLC E +++ D PC CGY+IC +CWH I + + G CPACR PY ++ V
Sbjct: 14 CPLCMEPLEIDDINFFPCTCGYQICRFCWHRI-----RTDENGLCPACRKPYPEDPAVYK 68
Query: 69 AAKCESMERXXXXXXXXXXXXXXXXXX----LSSVRVIQRNLVYIVGLPLNLGDEDLLQR 124
E ++R L+SVRV+Q+NLV++VGL L D ++L+R
Sbjct: 69 PLSQEELQRIKNEKKQKQNERKQKISENRKHLASVRVVQKNLVFVVGLSQRLADPEVLKR 128
Query: 125 REYFGQYGKVLKVSMSRTAAGVIQQFPNNTCSVYITYSKEEEAVRCIQSVHGFVLEGKSL 184
EYFG++GK+ KV ++ + + Q P+ S Y+TY + E+A+R IQ V+ V++G++L
Sbjct: 129 PEYFGKFGKIHKVVINNSTSYAGSQGPS--ASAYVTYIRSEDALRAIQCVNNVVVDGRTL 186
Query: 185 KACFGTTKYCHAWLRNVPCTNPDCLYLHEVGSQEDSFTKDEIISA----YTRSRVQQITG 240
KA GTTKYC +L+N+ C PDC+YLHE+G + SFTK+E+ + Y + +Q++
Sbjct: 187 KASLGTTKYCSYFLKNMQCPKPDCMYLHELGDEAASFTKEEMQAGKHQEYEQKLLQELYK 246
Query: 241 TTNN-LQRRSGNV-----LPPPFDDY-CHINSVSTAKPSVKNAANNTASISKDPIPN--- 290
N LQ +G+V P Y I+ S + S+ N +N+ IS P+
Sbjct: 247 LNPNFLQLSTGSVDKNKNKVTPLQRYDTPIDKPSDSL-SIGNG-DNSQQISNSDTPSPPP 304
Query: 291 GSSARSVALPAAAS-WGMRASNQQSVATSACSNGPSKQRPDTVGGALAFSSAVANTPSVS 349
G S + +P ++S R+ + +V S + + P+ + L +TP S
Sbjct: 305 GLSKSNPVIPISSSNHSARSPFEGAVTESQSLFSDNFRHPNPIPSGLP---PFPSTPQTS 361
Query: 350 T 350
+
Sbjct: 362 S 362
Score = 41 (19.5 bits), Expect = 2.3e-48, Sum P(2) = 2.3e-48
Identities = 15/39 (38%), Positives = 21/39 (53%)
Query: 681 MDFDTWD-DPLALPQNLAKLLS---EPEKEPSSLKMSSS 715
+ FD +D AL + K LS +P P+SL+ SSS
Sbjct: 403 LGFDPFDVTRKALADLIEKELSVQDQPSLSPTSLQNSSS 441
>UNIPROTKB|E2QXU7 [details] [associations]
symbol:CNOT4 "Uncharacterized protein" species:9615 "Canis
lupus familiaris" [GO:0003723 "RNA binding" evidence=IEA]
[GO:0008270 "zinc ion binding" evidence=IEA] [GO:0000166
"nucleotide binding" evidence=IEA] InterPro:IPR001841
InterPro:IPR000504 InterPro:IPR000571 InterPro:IPR012677
PROSITE:PS50089 PROSITE:PS50102 PROSITE:PS50103 SMART:SM00184
SMART:SM00360 GO:GO:0000166 GO:GO:0046872 GO:GO:0008270
Gene3D:3.30.70.330 GO:GO:0003723 Gene3D:3.30.40.10
InterPro:IPR013083 GeneTree:ENSGT00390000000068 EMBL:AAEX03010245
Ensembl:ENSCAFT00000005178 Uniprot:E2QXU7
Length = 642
Score = 488 (176.8 bits), Expect = 2.9e-48, Sum P(2) = 2.9e-48
Identities = 117/347 (33%), Positives = 185/347 (53%)
Query: 9 CPLCAEEMDLTDQQLKPCKCGYEICVWCWHHIMDMAEKEETEGRCPACRSPYDKEKIVGM 68
CPLC E +++ D PC CGY+IC +CWH I + + G CPACR PY ++ V
Sbjct: 14 CPLCMEPLEIDDINFFPCTCGYQICRFCWHRI-----RTDENGLCPACRKPYPEDPAVYK 68
Query: 69 AAKCESMERXXXXXXXXXXXXXXXXXX----LSSVRVIQRNLVYIVGLPLNLGDEDLLQR 124
E ++R L+SVRV+Q+NLV++VGL L D ++L+R
Sbjct: 69 PLSQEELQRIKNEKKQKQNERKQKISENRKHLASVRVVQKNLVFVVGLSQRLADPEVLKR 128
Query: 125 REYFGQYGKVLKVSMSRTAAGVIQQFPNNTCSVYITYSKEEEAVRCIQSVHGFVLEGKSL 184
EYFG++GK+ KV ++ + + Q P+ S Y+TY + E+A+R IQ V+ V++G++L
Sbjct: 129 PEYFGKFGKIHKVVINNSTSYAGSQGPS--ASAYVTYIRSEDALRAIQCVNNVVVDGRTL 186
Query: 185 KACFGTTKYCHAWLRNVPCTNPDCLYLHEVGSQEDSFTKDEIISA----YTRSRVQQITG 240
KA GTTKYC +L+N+ C PDC+YLHE+G + SFTK+E+ + Y + +Q++
Sbjct: 187 KASLGTTKYCSYFLKNMQCPKPDCMYLHELGDEAASFTKEEMQAGKHQEYEQKLLQELYK 246
Query: 241 TTNN-LQRRSGNV-----LPPPFDDY-CHINSVSTAKPSVKNAANNTASISKDPIPN--- 290
N LQ +G+V P Y I+ S + S+ N +N+ IS P+
Sbjct: 247 LNPNFLQLSTGSVDKNKNKVTPLQRYDTPIDKPSDSL-SIGNG-DNSQQISNSDTPSPPP 304
Query: 291 GSSARSVALPAAAS-WGMRASNQQSVATSACSNGPSKQRPDTVGGAL 336
G S + +P ++S R+ + +V S + + P+ + L
Sbjct: 305 GLSKSNPVIPISSSNHSARSPFEGAVTESQSLFSDNFRHPNPIPSGL 351
Score = 41 (19.5 bits), Expect = 2.9e-48, Sum P(2) = 2.9e-48
Identities = 15/39 (38%), Positives = 21/39 (53%)
Query: 681 MDFDTWD-DPLALPQNLAKLLS---EPEKEPSSLKMSSS 715
+ FD +D AL + K LS +P P+SL+ SSS
Sbjct: 403 LGFDPFDVTRKALADLIEKELSVQDQPSLSPTSLQNSSS 441
Score = 41 (19.5 bits), Expect = 2.9e-48, Sum P(2) = 2.9e-48
Identities = 19/64 (29%), Positives = 24/64 (37%)
Query: 707 PSSLKMSSSWKGHNHNQSRFSFARQEESRSHTFDNERSFSGFIQQPKSHSFNQDFAGNRD 766
PSS + SS W QS F+ S S + F G +QP+ F R
Sbjct: 355 PSSPQTSSDWPTAPEPQSLFTSETIPVSSSTDWQAAFGF-GSSKQPEDDLGFDPFDVTRK 413
Query: 767 PLLD 770
L D
Sbjct: 414 ALAD 417
>UNIPROTKB|O95628 [details] [associations]
symbol:CNOT4 "CCR4-NOT transcription complex subunit 4"
species:9606 "Homo sapiens" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0008270 "zinc ion binding" evidence=IEA]
[GO:0003723 "RNA binding" evidence=IEA] [GO:0006351 "transcription,
DNA-dependent" evidence=IEA] [GO:0006355 "regulation of
transcription, DNA-dependent" evidence=IEA] [GO:0005634 "nucleus"
evidence=IEA] [GO:0005515 "protein binding" evidence=IPI]
[GO:0051865 "protein autoubiquitination" evidence=IDA] [GO:0004842
"ubiquitin-protein ligase activity" evidence=IDA] [GO:0030014
"CCR4-NOT complex" evidence=IDA] [GO:0000288 "nuclear-transcribed
mRNA catabolic process, deadenylation-dependent decay"
evidence=TAS] [GO:0000289 "nuclear-transcribed mRNA poly(A) tail
shortening" evidence=TAS] [GO:0005829 "cytosol" evidence=TAS]
[GO:0010467 "gene expression" evidence=TAS] [GO:0016070 "RNA
metabolic process" evidence=TAS] [GO:0016071 "mRNA metabolic
process" evidence=TAS] Reactome:REACT_71 Reactome:REACT_21257
InterPro:IPR001841 InterPro:IPR000504 InterPro:IPR000571
InterPro:IPR012677 PROSITE:PS50089 PROSITE:PS50102 PROSITE:PS50103
SMART:SM00184 SMART:SM00360 UniPathway:UPA00143 Prosite:PS00518
GO:GO:0005829 GO:GO:0005634 GO:GO:0006355 GO:GO:0000166
GO:GO:0046872 GO:GO:0008270 Gene3D:3.30.70.330 GO:GO:0006351
GO:GO:0003723 KO:K10643 Gene3D:3.30.40.10 InterPro:IPR013083
GO:GO:0004842 GO:GO:0051865 GO:GO:0000289 EMBL:U71267 EMBL:U71268
EMBL:AF180475 EMBL:AL389980 EMBL:AK074671 EMBL:AK300365
EMBL:AC083871 EMBL:AC074002 EMBL:BC035590 EMBL:AF091094
IPI:IPI00002436 IPI:IPI00410681 IPI:IPI00410682 IPI:IPI00410683
IPI:IPI00410684 IPI:IPI00410685 IPI:IPI00410686 IPI:IPI00925697
IPI:IPI01026266 RefSeq:NP_001008226.1 RefSeq:NP_001177776.1
RefSeq:NP_001177777.1 RefSeq:NP_001177779.1 RefSeq:NP_037448.2
UniGene:Hs.490224 PDB:1E4U PDB:1UR6 PDBsum:1E4U PDBsum:1UR6
ProteinModelPortal:O95628 SMR:O95628 IntAct:O95628 STRING:O95628
PhosphoSite:O95628 PaxDb:O95628 PRIDE:O95628
Ensembl:ENST00000315544 Ensembl:ENST00000356162
Ensembl:ENST00000361528 Ensembl:ENST00000414802
Ensembl:ENST00000423368 Ensembl:ENST00000428680
Ensembl:ENST00000451834 GeneID:4850 KEGG:hsa:4850 UCSC:uc003vss.3
UCSC:uc003vst.3 UCSC:uc003vsu.2 UCSC:uc003vsv.2 CTD:4850
GeneCards:GC07M135046 H-InvDB:HIX0007112 HGNC:HGNC:7880
HPA:HPA005737 MIM:604911 neXtProt:NX_O95628 PharmGKB:PA26675
eggNOG:COG5175 HOVERGEN:HBG051043 EvolutionaryTrace:O95628
GenomeRNAi:4850 NextBio:18678 ArrayExpress:O95628 Bgee:O95628
CleanEx:HS_CNOT4 Genevestigator:O95628 GermOnline:ENSG00000080802
Uniprot:O95628
Length = 575
Score = 488 (176.8 bits), Expect = 2.9e-48, Sum P(2) = 2.9e-48
Identities = 117/347 (33%), Positives = 185/347 (53%)
Query: 9 CPLCAEEMDLTDQQLKPCKCGYEICVWCWHHIMDMAEKEETEGRCPACRSPYDKEKIVGM 68
CPLC E +++ D PC CGY+IC +CWH I + + G CPACR PY ++ V
Sbjct: 14 CPLCMEPLEIDDINFFPCTCGYQICRFCWHRI-----RTDENGLCPACRKPYPEDPAVYK 68
Query: 69 AAKCESMERXXXXXXXXXXXXXXXXXX----LSSVRVIQRNLVYIVGLPLNLGDEDLLQR 124
E ++R L+SVRV+Q+NLV++VGL L D ++L+R
Sbjct: 69 PLSQEELQRIKNEKKQKQNERKQKISENRKHLASVRVVQKNLVFVVGLSQRLADPEVLKR 128
Query: 125 REYFGQYGKVLKVSMSRTAAGVIQQFPNNTCSVYITYSKEEEAVRCIQSVHGFVLEGKSL 184
EYFG++GK+ KV ++ + + Q P+ S Y+TY + E+A+R IQ V+ V++G++L
Sbjct: 129 PEYFGKFGKIHKVVINNSTSYAGSQGPS--ASAYVTYIRSEDALRAIQCVNNVVVDGRTL 186
Query: 185 KACFGTTKYCHAWLRNVPCTNPDCLYLHEVGSQEDSFTKDEIISA----YTRSRVQQITG 240
KA GTTKYC +L+N+ C PDC+YLHE+G + SFTK+E+ + Y + +Q++
Sbjct: 187 KASLGTTKYCSYFLKNMQCPKPDCMYLHELGDEAASFTKEEMQAGKHQEYEQKLLQELYK 246
Query: 241 TTNN-LQRRSGNV-----LPPPFDDY-CHINSVSTAKPSVKNAANNTASISKDPIPN--- 290
N LQ +G+V P Y I+ S + S+ N +N+ IS P+
Sbjct: 247 LNPNFLQLSTGSVDKNKNKVTPLQRYDTPIDKPSDSL-SIGNG-DNSQQISNSDTPSPPP 304
Query: 291 GSSARSVALPAAAS-WGMRASNQQSVATSACSNGPSKQRPDTVGGAL 336
G S + +P ++S R+ + +V S + + P+ + L
Sbjct: 305 GLSKSNPVIPISSSNHSARSPFEGAVTESQSLFSDNFRHPNPIPSGL 351
Score = 41 (19.5 bits), Expect = 2.9e-48, Sum P(2) = 2.9e-48
Identities = 15/39 (38%), Positives = 21/39 (53%)
Query: 681 MDFDTWD-DPLALPQNLAKLLS---EPEKEPSSLKMSSS 715
+ FD +D AL + K LS +P P+SL+ SSS
Sbjct: 403 LGFDPFDVTRKALADLIEKELSVQDQPSLSPTSLQNSSS 441
Score = 41 (19.5 bits), Expect = 2.9e-48, Sum P(2) = 2.9e-48
Identities = 19/64 (29%), Positives = 24/64 (37%)
Query: 707 PSSLKMSSSWKGHNHNQSRFSFARQEESRSHTFDNERSFSGFIQQPKSHSFNQDFAGNRD 766
PSS + SS W QS F+ S S + F G +QP+ F R
Sbjct: 355 PSSPQTSSDWPTAPEPQSLFTSETIPVSSSTDWQAAFGF-GSSKQPEDDLGFDPFDVTRK 413
Query: 767 PLLD 770
L D
Sbjct: 414 ALAD 417
>UNIPROTKB|E2QXU6 [details] [associations]
symbol:CNOT4 "Uncharacterized protein" species:9615 "Canis
lupus familiaris" [GO:0003723 "RNA binding" evidence=IEA]
[GO:0008270 "zinc ion binding" evidence=IEA] [GO:0000166
"nucleotide binding" evidence=IEA] InterPro:IPR001841
InterPro:IPR000504 InterPro:IPR000571 InterPro:IPR012677
PROSITE:PS50089 PROSITE:PS50102 PROSITE:PS50103 SMART:SM00184
SMART:SM00360 GO:GO:0000166 GO:GO:0046872 GO:GO:0008270
Gene3D:3.30.70.330 GO:GO:0003723 KO:K10643 Gene3D:3.30.40.10
InterPro:IPR013083 CTD:4850 GeneTree:ENSGT00390000000068
EMBL:AAEX03010245 RefSeq:XP_859452.1 Ensembl:ENSCAFT00000005180
GeneID:482708 KEGG:cfa:482708 Uniprot:E2QXU6
Length = 572
Score = 484 (175.4 bits), Expect = 3.3e-48, Sum P(2) = 3.3e-48
Identities = 98/253 (38%), Positives = 149/253 (58%)
Query: 9 CPLCAEEMDLTDQQLKPCKCGYEICVWCWHHIMDMAEKEETEGRCPACRSPYDKEKIVGM 68
CPLC E +++ D PC CGY+IC +CWH I + + G CPACR PY ++ V
Sbjct: 14 CPLCMEPLEIDDINFFPCTCGYQICRFCWHRI-----RTDENGLCPACRKPYPEDPAVYK 68
Query: 69 AAKCESMERXXXXXXXXXXXXXXXXXX----LSSVRVIQRNLVYIVGLPLNLGDEDLLQR 124
E ++R L+SVRV+Q+NLV++VGL L D ++L+R
Sbjct: 69 PLSQEELQRIKNEKKQKQNERKQKISENRKHLASVRVVQKNLVFVVGLSQRLADPEVLKR 128
Query: 125 REYFGQYGKVLKVSMSRTAAGVIQQFPNNTCSVYITYSKEEEAVRCIQSVHGFVLEGKSL 184
EYFG++GK+ KV ++ + + Q P+ S Y+TY + E+A+R IQ V+ V++G++L
Sbjct: 129 PEYFGKFGKIHKVVINNSTSYAGSQGPS--ASAYVTYIRSEDALRAIQCVNNVVVDGRTL 186
Query: 185 KACFGTTKYCHAWLRNVPCTNPDCLYLHEVGSQEDSFTKDEIISA----YTRSRVQQITG 240
KA GTTKYC +L+N+ C PDC+YLHE+G + SFTK+E+ + Y + +Q++
Sbjct: 187 KASLGTTKYCSYFLKNMQCPKPDCMYLHELGDEAASFTKEEMQAGKHQEYEQKLLQELYK 246
Query: 241 TTNN-LQRRSGNV 252
N LQ +G+V
Sbjct: 247 LNPNFLQLSTGSV 259
Score = 45 (20.9 bits), Expect = 3.3e-48, Sum P(2) = 3.3e-48
Identities = 46/193 (23%), Positives = 77/193 (39%)
Query: 529 RTDPTQAATDASPQEEEDVLSFDN-QRLKDPEVVCRSNYLPKSANSLHVT--NHSRSHSF 585
+ P Q+ D P + + + DN Q++ + + L KS + ++ NHS F
Sbjct: 265 KVTPLQSPID-KPSDSLSIGNGDNSQQISNSDTPSPPPGLSKSNPVIPISSSNHSARSPF 323
Query: 586 QNSDALTAS-NLNSDPQFVDNSVNDGXXXXXXXXXXXXNGYPEKLARNTSGPGRAVENAF 644
+ A+T S +L SD N + G +P ++ P A E
Sbjct: 324 EG--AVTESQSLFSDNFRHPNPIPSGLPP-----------FPSSPQTSSDWP-TAPEPQS 369
Query: 645 LLSNEGQRMPRELQGDANIDAAVDTGENSIISNILSMD-FDTWDDPLA-LPQNLAKLLSE 702
L ++E +P + + AA G + + L D FD LA L + + +
Sbjct: 370 LFTSE--TIP--VSSSTDWQAAFGFGSSKQPEDDLGFDPFDVTRKALADLIEKELSVQDQ 425
Query: 703 PEKEPSSLKMSSS 715
P P+SL+ SSS
Sbjct: 426 PSLSPTSLQNSSS 438
Score = 41 (19.5 bits), Expect = 8.6e-48, Sum P(2) = 8.6e-48
Identities = 19/64 (29%), Positives = 24/64 (37%)
Query: 707 PSSLKMSSSWKGHNHNQSRFSFARQEESRSHTFDNERSFSGFIQQPKSHSFNQDFAGNRD 766
PSS + SS W QS F+ S S + F G +QP+ F R
Sbjct: 352 PSSPQTSSDWPTAPEPQSLFTSETIPVSSSTDWQAAFGF-GSSKQPEDDLGFDPFDVTRK 410
Query: 767 PLLD 770
L D
Sbjct: 411 ALAD 414
Score = 37 (18.1 bits), Expect = 2.3e-47, Sum P(2) = 2.3e-47
Identities = 9/29 (31%), Positives = 14/29 (48%)
Query: 269 AKPSVKNAANNTASISKDPIPNGSSARSV 297
A P+ N+ N+T S+ P R+V
Sbjct: 454 AAPTNANSLNSTFSVLPQRFPQFQQHRAV 482
>MGI|MGI:1859026 [details] [associations]
symbol:Cnot4 "CCR4-NOT transcription complex, subunit 4"
species:10090 "Mus musculus" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0003723 "RNA binding" evidence=IEA] [GO:0004842
"ubiquitin-protein ligase activity" evidence=ISO] [GO:0005634
"nucleus" evidence=IEA] [GO:0005737 "cytoplasm" evidence=IEA]
[GO:0006351 "transcription, DNA-dependent" evidence=IEA]
[GO:0006355 "regulation of transcription, DNA-dependent"
evidence=IEA] [GO:0008270 "zinc ion binding" evidence=IEA]
[GO:0016874 "ligase activity" evidence=IEA] [GO:0046872 "metal ion
binding" evidence=IEA] [GO:0051865 "protein autoubiquitination"
evidence=ISO] InterPro:IPR001841 InterPro:IPR000504
InterPro:IPR000571 InterPro:IPR012677 PROSITE:PS50089
PROSITE:PS50102 PROSITE:PS50103 SMART:SM00184 SMART:SM00360
MGI:MGI:1859026 Prosite:PS00518 GO:GO:0005634 GO:GO:0005737
GO:GO:0006355 GO:GO:0000166 GO:GO:0046872 GO:GO:0008270
Gene3D:3.30.70.330 GO:GO:0006351 GO:GO:0003723 KO:K10643
Gene3D:3.30.40.10 InterPro:IPR013083 GO:GO:0004842 GO:GO:0051865
CTD:4850 eggNOG:COG5175 HOVERGEN:HBG051043 EMBL:U71269
EMBL:AK009234 EMBL:AK028190 EMBL:AK032248 EMBL:BC058778
IPI:IPI00130086 IPI:IPI00410929 IPI:IPI00410930
RefSeq:NP_001157883.1 RefSeq:NP_001157885.1 RefSeq:NP_058573.3
UniGene:Mm.214525 UniGene:Mm.398182 PDB:2CPI PDBsum:2CPI
ProteinModelPortal:Q8BT14 SMR:Q8BT14 STRING:Q8BT14
PhosphoSite:Q8BT14 PaxDb:Q8BT14 PRIDE:Q8BT14
Ensembl:ENSMUST00000044163 Ensembl:ENSMUST00000114993 GeneID:53621
KEGG:mmu:53621 UCSC:uc009bid.2 UCSC:uc009big.2
GeneTree:ENSGT00390000000068 HOGENOM:HOG000065696 ChiTaRS:CNOT4
EvolutionaryTrace:Q8BT14 NextBio:310353 Bgee:Q8BT14
CleanEx:MM_CNOT4 Genevestigator:Q8BT14
GermOnline:ENSMUSG00000038784 Uniprot:Q8BT14
Length = 575
Score = 494 (179.0 bits), Expect = 8.0e-47, P = 8.0e-47
Identities = 120/358 (33%), Positives = 189/358 (52%)
Query: 9 CPLCAEEMDLTDQQLKPCKCGYEICVWCWHHIMDMAEKEETEGRCPACRSPYDKEKIVGM 68
CPLC E +++ D PC CGY+IC +CWH I + + G CPACR PY ++ V
Sbjct: 14 CPLCMEPLEIDDINFFPCTCGYQICRFCWHRI-----RTDENGLCPACRKPYPEDPAVYK 68
Query: 69 AAKCESMERXXXXXXXXXXXXXXXXXX----LSSVRVIQRNLVYIVGLPLNLGDEDLLQR 124
E ++R L+SVRV+Q+NLV++VGL L D ++L+R
Sbjct: 69 PLSQEELQRIKNEKKQKQNERKQKISENRKHLASVRVVQKNLVFVVGLSQRLADPEVLKR 128
Query: 125 REYFGQYGKVLKVSMSRTAAGVIQQFPNNTCSVYITYSKEEEAVRCIQSVHGFVLEGKSL 184
EYFG++GK+ KV ++ + + Q P+ S Y+TY + E+A+R IQ V+ V++G++L
Sbjct: 129 PEYFGKFGKIHKVVINNSTSYAGSQGPS--ASAYVTYIRSEDALRAIQCVNNVVVDGRTL 186
Query: 185 KACFGTTKYCHAWLRNVPCTNPDCLYLHEVGSQEDSFTKDEIISA----YTRSRVQQITG 240
KA GTTKYC +L+N+ C PDC+YLHE+G + SFTK+E+ + Y + +Q++
Sbjct: 187 KASLGTTKYCSYFLKNMQCPKPDCMYLHELGDEAASFTKEEMQAGKHQEYEQKLLQELYK 246
Query: 241 TTNN-LQRRSGNV-----LPPPFDDY-CHINSVSTAKPSVKNAANNTASISKDPIPN--- 290
N LQ +G+V P Y I+ S + S+ N +N+ IS P+
Sbjct: 247 LNPNFLQLSTGSVDKNKNKVTPLQRYDTPIDKPSDSL-SIGNG-DNSQQISNSDTPSPPP 304
Query: 291 GSSARSVALPAAAS-WGMRASNQQSVATSACSNGPSKQRPDTVGGALAFSSAVANTPS 347
G S + +P ++S R+ + +V S + + P+ + L + TPS
Sbjct: 305 GLSKSNPVIPISSSNHSARSPFEGAVTESQSLFSDNFRHPNPIPSGLPPFPSSPQTPS 362
>UNIPROTKB|I3LC53 [details] [associations]
symbol:LOC100622832 "Uncharacterized protein" species:9823
"Sus scrofa" [GO:0003723 "RNA binding" evidence=IEA] [GO:0008270
"zinc ion binding" evidence=IEA] [GO:0000166 "nucleotide binding"
evidence=IEA] InterPro:IPR001841 InterPro:IPR000504
InterPro:IPR000571 InterPro:IPR012677 PROSITE:PS50089
PROSITE:PS50102 PROSITE:PS50103 SMART:SM00184 SMART:SM00360
GO:GO:0000166 GO:GO:0046872 GO:GO:0008270 Gene3D:3.30.70.330
GO:GO:0003723 Gene3D:3.30.40.10 InterPro:IPR013083
GeneTree:ENSGT00390000000068 EMBL:FP015781
Ensembl:ENSSSCT00000029334 OMA:GKFGKIQ Uniprot:I3LC53
Length = 304
Score = 484 (175.4 bits), Expect = 1.1e-45, P = 1.1e-45
Identities = 98/253 (38%), Positives = 149/253 (58%)
Query: 9 CPLCAEEMDLTDQQLKPCKCGYEICVWCWHHIMDMAEKEETEGRCPACRSPYDKEKIVGM 68
CPLC E +++ D PC CGY+IC +CWH I + + G CPACR PY ++ V
Sbjct: 14 CPLCMEPLEIDDINFFPCTCGYQICRFCWHRI-----RTDENGLCPACRKPYPEDPAVYK 68
Query: 69 AAKCESMERXXXXXXXXXXXXXXXXXX----LSSVRVIQRNLVYIVGLPLNLGDEDLLQR 124
E ++R L+SVRV+Q+NLV++VGL L D ++L+R
Sbjct: 69 PLSQEELQRIKNEKKQKQNERKQKISENRKHLASVRVVQKNLVFVVGLSQRLADPEVLKR 128
Query: 125 REYFGQYGKVLKVSMSRTAAGVIQQFPNNTCSVYITYSKEEEAVRCIQSVHGFVLEGKSL 184
EYFG++GK+ KV ++ + + Q P+ S Y+TY + E+A+R IQ V+ V++G++L
Sbjct: 129 PEYFGKFGKIHKVVINNSTSYAGSQGPS--ASAYVTYIRSEDALRAIQCVNNVVVDGRTL 186
Query: 185 KACFGTTKYCHAWLRNVPCTNPDCLYLHEVGSQEDSFTKDEIISA----YTRSRVQQITG 240
KA GTTKYC +L+N+ C PDC+YLHE+G + SFTK+E+ + Y + +Q++
Sbjct: 187 KASLGTTKYCSYFLKNMQCPKPDCMYLHELGDEAASFTKEEMQAGKHQEYEQKLLQELYK 246
Query: 241 TTNN-LQRRSGNV 252
N LQ +G+V
Sbjct: 247 LNPNFLQLSTGSV 259
>DICTYBASE|DDB_G0275005 [details] [associations]
symbol:DDB_G0275005 "putative CCR4-NOT complex
subunit 4" species:44689 "Dictyostelium discoideum" [GO:0008270
"zinc ion binding" evidence=IEA] [GO:0003676 "nucleic acid binding"
evidence=IEA] [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0008150 "biological_process" evidence=ND] [GO:0030015 "CCR4-NOT
core complex" evidence=ISS] [GO:0046872 "metal ion binding"
evidence=IEA] InterPro:IPR001841 InterPro:IPR000504
InterPro:IPR012677 Pfam:PF13639 PROSITE:PS50089 PROSITE:PS50102
SMART:SM00184 SMART:SM00360 dictyBase:DDB_G0275005 GO:GO:0000166
GO:GO:0046872 GO:GO:0008270 Gene3D:3.30.70.330 GO:GO:0003676
EMBL:AAFI02000012 KO:K10643 Gene3D:3.30.40.10 InterPro:IPR013083
GO:GO:0030015 eggNOG:COG5175 RefSeq:XP_644313.1
ProteinModelPortal:Q554L0 SMR:Q554L0 EnsemblProtists:DDB0237630
GeneID:8619741 KEGG:ddi:DDB_G0275005 OMA:QEHPHLP Uniprot:Q554L0
Length = 1486
Score = 385 (140.6 bits), Expect = 1.4e-45, Sum P(5) = 1.4e-45
Identities = 89/254 (35%), Positives = 152/254 (59%)
Query: 96 LSSVRVIQRNLVYIVGLPLNLGDEDLLQRREYFGQYGKVLKVSMSRTAAGVIQQFPNNTC 155
L++VRVIQRNLVY+ L +++ ++L++ EYF QYGK+LK+ ++R + P+ C
Sbjct: 112 LNTVRVIQRNLVYVTNLAISIAKPEILKKNEYFAQYGKILKIVINRNNIYNLNS-PHGAC 170
Query: 156 -SVYITYSKEEEAVRCIQSVHGFVLEGKSLKACFGTTKYCHAWLRNVPCTNPDCLYLHEV 214
S YITY+++E+A+ IQ++ G +EG+ L+A FGTTKYC +LR +PC NPDC+YLHE+
Sbjct: 171 VSAYITYARKEDALVAIQTIDGATIEGRVLRASFGTTKYCSYFLRKLPCNNPDCMYLHEL 230
Query: 215 GSQEDSFTKDEIISA--YTRSRVQQITGTTNNLQRRSGNVLPPPFDDYCHINSVSTAKPS 272
G ++DS+TK++I S Y QQ T + ++ VL P ++S +++ +
Sbjct: 231 GQEDDSYTKEDITSTAVYKPKPTQQPTPWKESSEK----VLASP-----SLSSSTSSTNN 281
Query: 273 VKNAAN----NTASISKDPI--------PNGSSARSVA---LPAAASWGMRASNQQSVAT 317
+ N+++ N +++S P+ P+ + A S+A LP+ +S + S ++
Sbjct: 282 MSNSSSFKTWNISNVSPQPVTVLNPLEWPSATDASSMAPAILPSGSSPPLSKSQERPFLP 341
Query: 318 SACSNGPS--KQRP 329
+ S G + Q+P
Sbjct: 342 ATASWGQNIINQKP 355
Score = 172 (65.6 bits), Expect = 1.4e-45, Sum P(5) = 1.4e-45
Identities = 29/61 (47%), Positives = 41/61 (67%)
Query: 1 MSDEGEKTCPLCAEEMDLTDQQLKPCKCGYEICVWCWHHIMDMAEKEETEGRCPACRSPY 60
MSDE + +CPLC +E+ D++ +PC CGY+ICV+C+ I +E + RCPACR Y
Sbjct: 1 MSDE-DNSCPLCLDELSKADRKFRPCPCGYQICVFCFERI-----RESEQNRCPACRKTY 54
Query: 61 D 61
D
Sbjct: 55 D 55
Score = 57 (25.1 bits), Expect = 3.4e-45, Sum P(4) = 3.4e-45
Identities = 26/100 (26%), Positives = 45/100 (45%)
Query: 387 EPPT-PNGE---PASVSLSNQASCPTKYTDKSLNMPPNVIHSSDTTDHSCLSGPEKEENV 442
+PP PNG P L Q P + + + N P N +SS+ ++S ++ +
Sbjct: 1374 QPPIIPNGNLRPPGMTQLGYQQIPPGMHNNNN-NNPNNNSNSSNNNNNSNFIDFLRQSGI 1432
Query: 443 TA--DVKMQGLCSDVSAMSIDRNATNEHSGVARASSALPD 480
T DV G+ + S ++ +++ EH VA + L D
Sbjct: 1433 TMNDDVNSSGMMTPSSLLN---DSSLEHR-VASTNKELKD 1468
Score = 51 (23.0 bits), Expect = 1.4e-45, Sum P(5) = 1.4e-45
Identities = 14/61 (22%), Positives = 34/61 (55%)
Query: 549 SFDNQRLKDPEVVCRSNYLPKSANSLHVTNHSRSHSFQNSDALTASNLNSDPQFVDNSVN 608
SF NQ++ P + N S N++++ N++ +++ N++ +N N++ +N+ N
Sbjct: 923 SFPNQQVSQPSL--NGN---NSNNNININNNNTNNNNSNNNNNNNNNNNNNNNNNNNNNN 977
Query: 609 D 609
+
Sbjct: 978 N 978
Score = 50 (22.7 bits), Expect = 1.4e-45, Sum P(5) = 1.4e-45
Identities = 22/86 (25%), Positives = 34/86 (39%)
Query: 397 SVSLSNQASCPTKYTDKSLNMPPNVIHSSDTTDHSCLSG--PEKEENVTADVKMQGLCSD 454
+V+ PT+ T+ + + PP+ +S T + LS PEK + D
Sbjct: 728 TVTAPTPTPTPTQTTNSASSPPPSSSSTSSPTSTANLSTNPPEKRSRSRFE-----FAKD 782
Query: 455 VSAMSIDRNATNEHSGVARASSALPD 480
S S+D + S AS PD
Sbjct: 783 SSRNSVDTTGSLSSSTNNTASLITPD 808
Score = 45 (20.9 bits), Expect = 1.7e-08, Sum P(3) = 1.7e-08
Identities = 21/77 (27%), Positives = 33/77 (42%)
Query: 228 SAYTRSRVQQITGTTNNLQRRSGNVLPPPFDDYCHINSVSTAKPSVKNAANNTASISKDP 287
S+ T S +TN ++RS + F NSV T S+ ++ NNTAS+
Sbjct: 752 SSSTSSPTSTANLSTNPPEKRSRSRFE--FAKDSSRNSVDTTG-SLSSSTNNTASLITPD 808
Query: 288 IPNGSSARSVALPAAAS 304
+ + LP +S
Sbjct: 809 MFFSIQSEQYQLPTLSS 825
Score = 44 (20.5 bits), Expect = 7.5e-44, Sum P(4) = 7.5e-44
Identities = 25/97 (25%), Positives = 37/97 (38%)
Query: 657 LQGDANIDAAVDTGENSIISNILS-MDFDTWDDPLALPQNLAKLLSEPEKEPSSLKMSSS 715
L D N E +I+ +S ++ T P P S P SS +S
Sbjct: 701 LSEDKNKSPPTQPLEELVIAETISTINTVTAPTPTPTPTQTTNSASSPPPSSSSTSSPTS 760
Query: 716 WKGHNHN------QSRFSFARQEESRSHTFDNERSFS 746
+ N +SRF FA+ + SR+ + D S S
Sbjct: 761 TANLSTNPPEKRSRSRFEFAK-DSSRN-SVDTTGSLS 795
Score = 43 (20.2 bits), Expect = 5.4e-09, Sum P(4) = 5.4e-09
Identities = 15/75 (20%), Positives = 33/75 (44%)
Query: 239 TGTTNNLQRRSGNVLPPPFDDYCHINSVSTAKPSVKNAANNTASISKDPIPNGSSARSVA 298
T TT N+ + PP ++ N+++T + N TA+ + ++A +++
Sbjct: 554 TNTTPNIT----STTPPTNNN----NTIATTTNTTNTTTNTTATTPLTTSSSSNNATTLS 605
Query: 299 LPAAASWGMRASNQQ 313
P S + N++
Sbjct: 606 TPLTTSTTLDLLNER 620
Score = 40 (19.1 bits), Expect = 1.4e-45, Sum P(5) = 1.4e-45
Identities = 10/43 (23%), Positives = 21/43 (48%)
Query: 308 RASNQQSVATSACSNGPSKQRPDTVGGALAFSSAVANTPSVST 350
++S++Q+ T+ N S P +A ++ NT + +T
Sbjct: 545 KSSSKQTTPTNTTPNITSTTPPTNNNNTIATTTNTTNTTTNTT 587
Score = 40 (19.1 bits), Expect = 1.5e-44, Sum P(5) = 1.5e-44
Identities = 10/25 (40%), Positives = 14/25 (56%)
Query: 386 SEPPTPNGEPAS-VSLSNQASCPTK 409
S PP P +P+S +S S PT+
Sbjct: 688 SSPPQPQLQPSSPLSEDKNKSPPTQ 712
Score = 40 (19.1 bits), Expect = 1.9e-44, Sum P(5) = 1.9e-44
Identities = 13/48 (27%), Positives = 29/48 (60%)
Query: 563 RSNYLPKSANSLHVTNHSRSHSFQNSDALTASNLNSDPQFVDNSVNDG 610
+SN + N+ + TN++ +++ NS ++S +N + Q + + VN+G
Sbjct: 1102 QSNNNTTTTNNNNSTNNNNNNNNGNSLNNSSSTINGN-QLL-SMVNNG 1147
Score = 40 (19.1 bits), Expect = 1.3e-08, Sum P(3) = 1.3e-08
Identities = 12/44 (27%), Positives = 22/44 (50%)
Query: 251 NVLPPPFDDYCHINSVSTAKPSVKNAANNTASISKDPIPNGSSA 294
N++PPP + N+ +T + N+ NN + + N SS+
Sbjct: 1094 NIIPPP--GFQSNNNTTTTNNN--NSTNNNNNNNNGNSLNNSSS 1133
>UNIPROTKB|F1MAD6 [details] [associations]
symbol:Cnot4 "Protein Cnot4" species:10116 "Rattus
norvegicus" [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0003723 "RNA binding" evidence=IEA] [GO:0008270 "zinc ion
binding" evidence=IEA] InterPro:IPR001841 InterPro:IPR000504
InterPro:IPR000571 InterPro:IPR012677 PROSITE:PS50089
PROSITE:PS50102 PROSITE:PS50103 SMART:SM00184 SMART:SM00360
RGD:1310318 GO:GO:0000166 GO:GO:0046872 GO:GO:0008270
Gene3D:3.30.70.330 GO:GO:0003723 Gene3D:3.30.40.10
InterPro:IPR013083 GeneTree:ENSGT00390000000068 OMA:KCRICPT
IPI:IPI00565508 PRIDE:F1MAD6 Ensembl:ENSRNOT00000040969
ArrayExpress:F1MAD6 Uniprot:F1MAD6
Length = 713
Score = 494 (179.0 bits), Expect = 2.1e-45, Sum P(2) = 2.1e-45
Identities = 120/358 (33%), Positives = 189/358 (52%)
Query: 9 CPLCAEEMDLTDQQLKPCKCGYEICVWCWHHIMDMAEKEETEGRCPACRSPYDKEKIVGM 68
CPLC E +++ D PC CGY+IC +CWH I + + G CPACR PY ++ V
Sbjct: 14 CPLCMEPLEIDDINFFPCTCGYQICRFCWHRI-----RTDENGLCPACRKPYPEDPAVYK 68
Query: 69 AAKCESMERXXXXXXXXXXXXXXXXXX----LSSVRVIQRNLVYIVGLPLNLGDEDLLQR 124
E ++R L+SVRV+Q+NLV++VGL L D ++L+R
Sbjct: 69 PLSQEELQRIKNEKKQKQNERKQKISENRKHLASVRVVQKNLVFVVGLSQRLADPEVLKR 128
Query: 125 REYFGQYGKVLKVSMSRTAAGVIQQFPNNTCSVYITYSKEEEAVRCIQSVHGFVLEGKSL 184
EYFG++GK+ KV ++ + + Q P+ S Y+TY + E+A+R IQ V+ V++G++L
Sbjct: 129 PEYFGKFGKIHKVVINNSTSYAGSQGPS--ASAYVTYIRSEDALRAIQCVNNVVVDGRTL 186
Query: 185 KACFGTTKYCHAWLRNVPCTNPDCLYLHEVGSQEDSFTKDEIISA----YTRSRVQQITG 240
KA GTTKYC +L+N+ C PDC+YLHE+G + SFTK+E+ + Y + +Q++
Sbjct: 187 KASLGTTKYCSYFLKNMQCPKPDCMYLHELGDEAASFTKEEMQAGKHQEYEQKLLQELYK 246
Query: 241 TTNN-LQRRSGNV-----LPPPFDDY-CHINSVSTAKPSVKNAANNTASISKDPIPN--- 290
N LQ +G+V P Y I+ S + S+ N +N+ IS P+
Sbjct: 247 LNPNFLQLSTGSVDKNKNKVTPLQRYDVPIDKPSDSL-SIGNG-DNSQQISNSDTPSPPP 304
Query: 291 GSSARSVALPAAAS-WGMRASNQQSVATSACSNGPSKQRPDTVGGALAFSSAVANTPS 347
G S + +P ++S R+ + +V S + + P+ + L + TPS
Sbjct: 305 GLSKSNPVIPISSSNHSARSPFEGAVTESQSLFSDNFRHPNPIPSGLPPFPSSPQTPS 362
Score = 38 (18.4 bits), Expect = 2.1e-45, Sum P(2) = 2.1e-45
Identities = 13/44 (29%), Positives = 20/44 (45%)
Query: 722 NQSRFSFARQEESRSHTFDNERSFSGFIQQ--P-KSHSFNQDFA 762
+Q S + S SHT + SGF+ P ++S N F+
Sbjct: 427 DQPSLSSTSLQNSSSHTTSAKGPGSGFLHPAAPANANSLNSTFS 470
>ZFIN|ZDB-GENE-090313-262 [details] [associations]
symbol:si:dkey-230e6.2 "si:dkey-230e6.2"
species:7955 "Danio rerio" [GO:0003676 "nucleic acid binding"
evidence=IEA] [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0008270 "zinc ion binding" evidence=IEA] [GO:0046872 "metal ion
binding" evidence=IEA] [GO:0003723 "RNA binding" evidence=IEA]
InterPro:IPR001841 InterPro:IPR000504 InterPro:IPR000571
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50089 PROSITE:PS50102
PROSITE:PS50103 SMART:SM00184 SMART:SM00360
ZFIN:ZDB-GENE-090313-262 GO:GO:0000166 GO:GO:0046872 GO:GO:0008270
Gene3D:3.30.70.330 GO:GO:0003723 KO:K10643 Gene3D:3.30.40.10
InterPro:IPR013083 GeneTree:ENSGT00390000000068 OMA:KCRICPT
EMBL:CABZ01070060 EMBL:CR387984 IPI:IPI00487935 RefSeq:XP_697509.2
Ensembl:ENSDART00000034714 GeneID:569055 KEGG:dre:569055
NextBio:20889484 Uniprot:E7F2Q8
Length = 772
Score = 476 (172.6 bits), Expect = 2.2e-45, Sum P(3) = 2.2e-45
Identities = 91/227 (40%), Positives = 136/227 (59%)
Query: 4 EGEKTCPLCAEEMDLTDQQLKPCKCGYEICVWCWHHIMDMAEKEETEGRCPACRSPYDKE 63
E CPLC E +++ D PC CGY+IC +CWH I + + G CPACR PY ++
Sbjct: 9 EDPMECPLCMEPLEIDDVNFFPCTCGYQICRFCWHRI-----RTDENGLCPACRKPYPED 63
Query: 64 KIVGMAAKCESMERXXXXXXXXXXXXXXXXXX----LSSVRVIQRNLVYIVGLPLNLGDE 119
V E ++R L+SVRV+QRNLV++VGL L D
Sbjct: 64 PAVYKPLSQEEIQRIKNEKKQKLNEKKQKVTENRKHLASVRVVQRNLVFVVGLSQRLADA 123
Query: 120 DLLQRREYFGQYGKVLKVSMSRTAAGVIQQFPNNTCSVYITYSKEEEAVRCIQSVHGFVL 179
++L+R EYFG++GK+ KV ++ + + Q P+ S Y+TY + E+A+R IQ V+ ++
Sbjct: 124 EVLKRPEYFGKFGKIHKVVINNSTSYAGSQGPS--ASAYVTYIRSEDALRAIQCVNNVIV 181
Query: 180 EGKSLKACFGTTKYCHAWLRNVPCTNPDCLYLHEVGSQEDSFTKDEI 226
+G++LKA GTTKYC +L+++ C PDC+YLHE+G + SFTK+E+
Sbjct: 182 DGRTLKASLGTTKYCSYFLKSMQCPKPDCMYLHELGDEAASFTKEEM 228
Score = 55 (24.4 bits), Expect = 2.2e-45, Sum P(3) = 2.2e-45
Identities = 38/171 (22%), Positives = 62/171 (36%)
Query: 387 EPPTPNGEPASVSLSNQASC--PTKYTDKSLNMPPNVIHSSDTTDHSCLSGPEKEENVTA 444
EP G + L S PT DK + P ++ + + + S P +T
Sbjct: 316 EPDLEQGTEQNTGLPPFPSALEPTSPIDKP-SEPISIGNGENISQTSSSDSPSPPPGLTK 374
Query: 445 DVKMQGLCSDVSAMSIDRNATNEHSGVARASSALPDHGMMKLPRN--QGLQPY-NADL-C 500
L +S + + E A + S D+ + P GL P+ N+
Sbjct: 375 P----SLVVPISVAELTARSPFE-GAAAESQSLFSDNSNFRHPNPIPSGLPPFSNSPQGA 429
Query: 501 REPLMSPETGKSITSKNDAFVSREPFDWRTDPTQAATDASPQEEEDVLSFD 551
+ M+PE TS+ S DW+ + A Q+++D L FD
Sbjct: 430 SDWPMTPEPQSLFTSETIPVSSST--DWQA-AFGFGSSAKQQQQDDDLGFD 477
Score = 47 (21.6 bits), Expect = 2.2e-45, Sum P(3) = 2.2e-45
Identities = 17/47 (36%), Positives = 21/47 (44%)
Query: 681 MDFDTWD-DPLALPQNLAKLLSEPEKEPSSLKMSSSWKGHNHNQSRF 726
+ FD +D AL + K LS E P S SS G + Q RF
Sbjct: 474 LGFDPFDVTRKALADLIEKELSVQEHSPLSPNPSSHQTGLPNGQQRF 520
Score = 46 (21.3 bits), Expect = 3.3e-43, Sum P(2) = 3.3e-43
Identities = 11/46 (23%), Positives = 27/46 (58%)
Query: 262 HINSVSTAKPSVKNAANNTASISKDPIPNGSS--ARSVALPAAASW 305
+IN + +++++T+S++ +P GS+ + S++ + ASW
Sbjct: 614 NINFGGLPNSTSSSSSSSTSSVNHIGVPIGSAGISHSLSWDSTASW 659
Score = 43 (20.2 bits), Expect = 4.0e-44, Sum P(3) = 4.0e-44
Identities = 18/59 (30%), Positives = 26/59 (44%)
Query: 268 TAKPSVKNAANNTASISKD--------PIPNGSSARSVALPAAASWGMRASNQQSVATS 318
TA+ + AA + S+ D PIP+G S + A+ W M QS+ TS
Sbjct: 387 TARSPFEGAAAESQSLFSDNSNFRHPNPIPSGLPPFSNSPQGASDWPM-TPEPQSLFTS 444
>RGD|1310318 [details] [associations]
symbol:Cnot4 "CCR4-NOT transcription complex, subunit 4"
species:10116 "Rattus norvegicus" [GO:0004842 "ubiquitin-protein
ligase activity" evidence=ISO] [GO:0051865 "protein
autoubiquitination" evidence=ISO] [GO:0030014 "CCR4-NOT complex"
evidence=ISO] InterPro:IPR001841 InterPro:IPR000504
InterPro:IPR000571 InterPro:IPR012677 PROSITE:PS50089
PROSITE:PS50102 PROSITE:PS50103 SMART:SM00184 SMART:SM00360
RGD:1310318 GO:GO:0000166 GO:GO:0046872 GO:GO:0008270
Gene3D:3.30.70.330 GO:GO:0003723 KO:K10643 Gene3D:3.30.40.10
InterPro:IPR013083 CTD:4850 eggNOG:COG5175 HOVERGEN:HBG051043
HOGENOM:HOG000065696 UniGene:Rn.203387 IPI:IPI00565508
EMBL:BC100152 RefSeq:NP_001032871.1 ProteinModelPortal:Q498M7
SMR:Q498M7 STRING:Q498M7 GeneID:312227 KEGG:rno:312227
UCSC:RGD:1310318 InParanoid:Q498M7 OrthoDB:EOG43BMNB NextBio:664680
Genevestigator:Q498M7 Uniprot:Q498M7
Length = 710
Score = 490 (177.5 bits), Expect = 6.7e-45, Sum P(2) = 6.7e-45
Identities = 119/356 (33%), Positives = 188/356 (52%)
Query: 9 CPLCAEEMDLTDQQLKPCKCGYEICVWCWHHIMDMAEKEETEGRCPACRSPYDKEKIVGM 68
CPLC E +++ D PC CGY+IC +CWH I + + G CPACR PY ++ V
Sbjct: 14 CPLCMEPLEIDDINFFPCTCGYQICRFCWHRI-----RTDENGLCPACRKPYPEDPAVYK 68
Query: 69 AAKCESMERXXXXXXXXXXXXXXXXXX----LSSVRVIQRNLVYIVGLPLNLGDEDLLQR 124
E ++R L+SVRV+Q+NLV++VGL L D ++L+R
Sbjct: 69 PLSQEELQRIKNEKKQKQNERKQKISENRKHLASVRVVQKNLVFVVGLSQRLADPEVLKR 128
Query: 125 REYFGQYGKVLKVSMSRTAAGVIQQFPNNTCSVYITYSKEEEAVRCIQSVHGFVLEGKSL 184
EYFG++GK+ KV ++ + + Q P+ S Y+TY + E+A+R IQ V+ V++G++L
Sbjct: 129 PEYFGKFGKIHKVVINNSTSYAGSQGPS--ASAYVTYIRSEDALRAIQCVNNVVVDGRTL 186
Query: 185 KACFGTTKYCHAWLRNVPCTNPDCLYLHEVGSQEDSFTKDEIISA----YTRSRVQQITG 240
KA GTTKYC +L+N+ C PDC+YLHE+G + SFTK+E+ + Y + +Q++
Sbjct: 187 KASLGTTKYCSYFLKNMQCPKPDCMYLHELGDEAASFTKEEMQAGKHQEYEQKLLQELYK 246
Query: 241 TTNN-LQRRSGNVLPPPFDDYCHINSVSTAKPS----VKNAANNTASISKDPIPN---GS 292
N LQ +G+V + + S KPS + N +N+ IS P+ G
Sbjct: 247 LNPNFLQLSTGSV-DKNKNKVTPLQS-PIDKPSDSLSIGNG-DNSQQISNSDTPSPPPGL 303
Query: 293 SARSVALPAAAS-WGMRASNQQSVATSACSNGPSKQRPDTVGGALAFSSAVANTPS 347
S + +P ++S R+ + +V S + + P+ + L + TPS
Sbjct: 304 SKSNPVIPISSSNHSARSPFEGAVTESQSLFSDNFRHPNPIPSGLPPFPSSPQTPS 359
Score = 38 (18.4 bits), Expect = 6.7e-45, Sum P(2) = 6.7e-45
Identities = 13/44 (29%), Positives = 20/44 (45%)
Query: 722 NQSRFSFARQEESRSHTFDNERSFSGFIQQ--P-KSHSFNQDFA 762
+Q S + S SHT + SGF+ P ++S N F+
Sbjct: 424 DQPSLSSTSLQNSSSHTTSAKGPGSGFLHPAAPANANSLNSTFS 467
>UNIPROTKB|F8VQP3 [details] [associations]
symbol:CNOT4 "CCR4-NOT transcription complex subunit 4"
species:9606 "Homo sapiens" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0008270 "zinc ion binding" evidence=IEA]
[GO:0003723 "RNA binding" evidence=IEA] InterPro:IPR001841
InterPro:IPR000504 InterPro:IPR000571 InterPro:IPR012677
PROSITE:PS50089 PROSITE:PS50102 PROSITE:PS50103 SMART:SM00184
SMART:SM00360 GO:GO:0000166 GO:GO:0046872 GO:GO:0008270
Gene3D:3.30.70.330 GO:GO:0003723 KO:K10643 Gene3D:3.30.40.10
InterPro:IPR013083 EMBL:AC083871 RefSeq:NP_001177779.1
UniGene:Hs.490224 GeneID:4850 KEGG:hsa:4850 CTD:4850 HGNC:HGNC:7880
GenomeRNAi:4850 NextBio:18678 EMBL:AC009331 IPI:IPI01011519
ProteinModelPortal:F8VQP3 SMR:F8VQP3 Ensembl:ENST00000541284
UCSC:uc011kpy.2 ArrayExpress:F8VQP3 Bgee:F8VQP3 Uniprot:F8VQP3
Length = 713
Score = 488 (176.8 bits), Expect = 7.2e-45, Sum P(2) = 7.2e-45
Identities = 117/347 (33%), Positives = 185/347 (53%)
Query: 9 CPLCAEEMDLTDQQLKPCKCGYEICVWCWHHIMDMAEKEETEGRCPACRSPYDKEKIVGM 68
CPLC E +++ D PC CGY+IC +CWH I + + G CPACR PY ++ V
Sbjct: 14 CPLCMEPLEIDDINFFPCTCGYQICRFCWHRI-----RTDENGLCPACRKPYPEDPAVYK 68
Query: 69 AAKCESMERXXXXXXXXXXXXXXXXXX----LSSVRVIQRNLVYIVGLPLNLGDEDLLQR 124
E ++R L+SVRV+Q+NLV++VGL L D ++L+R
Sbjct: 69 PLSQEELQRIKNEKKQKQNERKQKISENRKHLASVRVVQKNLVFVVGLSQRLADPEVLKR 128
Query: 125 REYFGQYGKVLKVSMSRTAAGVIQQFPNNTCSVYITYSKEEEAVRCIQSVHGFVLEGKSL 184
EYFG++GK+ KV ++ + + Q P+ S Y+TY + E+A+R IQ V+ V++G++L
Sbjct: 129 PEYFGKFGKIHKVVINNSTSYAGSQGPS--ASAYVTYIRSEDALRAIQCVNNVVVDGRTL 186
Query: 185 KACFGTTKYCHAWLRNVPCTNPDCLYLHEVGSQEDSFTKDEIISA----YTRSRVQQITG 240
KA GTTKYC +L+N+ C PDC+YLHE+G + SFTK+E+ + Y + +Q++
Sbjct: 187 KASLGTTKYCSYFLKNMQCPKPDCMYLHELGDEAASFTKEEMQAGKHQEYEQKLLQELYK 246
Query: 241 TTNN-LQRRSGNV-----LPPPFDDY-CHINSVSTAKPSVKNAANNTASISKDPIPN--- 290
N LQ +G+V P Y I+ S + S+ N +N+ IS P+
Sbjct: 247 LNPNFLQLSTGSVDKNKNKVTPLQRYDTPIDKPSDSL-SIGNG-DNSQQISNSDTPSPPP 304
Query: 291 GSSARSVALPAAAS-WGMRASNQQSVATSACSNGPSKQRPDTVGGAL 336
G S + +P ++S R+ + +V S + + P+ + L
Sbjct: 305 GLSKSNPVIPISSSNHSARSPFEGAVTESQSLFSDNFRHPNPIPSGL 351
Score = 41 (19.5 bits), Expect = 7.2e-45, Sum P(2) = 7.2e-45
Identities = 15/39 (38%), Positives = 21/39 (53%)
Query: 681 MDFDTWD-DPLALPQNLAKLLS---EPEKEPSSLKMSSS 715
+ FD +D AL + K LS +P P+SL+ SSS
Sbjct: 403 LGFDPFDVTRKALADLIEKELSVQDQPSLSPTSLQNSSS 441
Score = 41 (19.5 bits), Expect = 7.2e-45, Sum P(2) = 7.2e-45
Identities = 19/64 (29%), Positives = 24/64 (37%)
Query: 707 PSSLKMSSSWKGHNHNQSRFSFARQEESRSHTFDNERSFSGFIQQPKSHSFNQDFAGNRD 766
PSS + SS W QS F+ S S + F G +QP+ F R
Sbjct: 355 PSSPQTSSDWPTAPEPQSLFTSETIPVSSSTDWQAAFGF-GSSKQPEDDLGFDPFDVTRK 413
Query: 767 PLLD 770
L D
Sbjct: 414 ALAD 417
>UNIPROTKB|E2QXU8 [details] [associations]
symbol:CNOT4 "Uncharacterized protein" species:9615 "Canis
lupus familiaris" [GO:0003723 "RNA binding" evidence=IEA]
[GO:0008270 "zinc ion binding" evidence=IEA] [GO:0000166
"nucleotide binding" evidence=IEA] InterPro:IPR001841
InterPro:IPR000504 InterPro:IPR000571 InterPro:IPR012677
PROSITE:PS50089 PROSITE:PS50102 PROSITE:PS50103 SMART:SM00184
SMART:SM00360 GO:GO:0000166 GO:GO:0046872 GO:GO:0008270
Gene3D:3.30.70.330 GO:GO:0003723 KO:K10643 Gene3D:3.30.40.10
InterPro:IPR013083 CTD:4850 GeneTree:ENSGT00390000000068
EMBL:AAEX03010245 GeneID:482708 KEGG:cfa:482708 RefSeq:XP_859650.1
Ensembl:ENSCAFT00000005176 OMA:KCRICPT NextBio:20857244
Uniprot:E2QXU8
Length = 710
Score = 484 (175.4 bits), Expect = 8.7e-45, Sum P(2) = 8.7e-45
Identities = 98/253 (38%), Positives = 149/253 (58%)
Query: 9 CPLCAEEMDLTDQQLKPCKCGYEICVWCWHHIMDMAEKEETEGRCPACRSPYDKEKIVGM 68
CPLC E +++ D PC CGY+IC +CWH I + + G CPACR PY ++ V
Sbjct: 14 CPLCMEPLEIDDINFFPCTCGYQICRFCWHRI-----RTDENGLCPACRKPYPEDPAVYK 68
Query: 69 AAKCESMERXXXXXXXXXXXXXXXXXX----LSSVRVIQRNLVYIVGLPLNLGDEDLLQR 124
E ++R L+SVRV+Q+NLV++VGL L D ++L+R
Sbjct: 69 PLSQEELQRIKNEKKQKQNERKQKISENRKHLASVRVVQKNLVFVVGLSQRLADPEVLKR 128
Query: 125 REYFGQYGKVLKVSMSRTAAGVIQQFPNNTCSVYITYSKEEEAVRCIQSVHGFVLEGKSL 184
EYFG++GK+ KV ++ + + Q P+ S Y+TY + E+A+R IQ V+ V++G++L
Sbjct: 129 PEYFGKFGKIHKVVINNSTSYAGSQGPS--ASAYVTYIRSEDALRAIQCVNNVVVDGRTL 186
Query: 185 KACFGTTKYCHAWLRNVPCTNPDCLYLHEVGSQEDSFTKDEIISA----YTRSRVQQITG 240
KA GTTKYC +L+N+ C PDC+YLHE+G + SFTK+E+ + Y + +Q++
Sbjct: 187 KASLGTTKYCSYFLKNMQCPKPDCMYLHELGDEAASFTKEEMQAGKHQEYEQKLLQELYK 246
Query: 241 TTNN-LQRRSGNV 252
N LQ +G+V
Sbjct: 247 LNPNFLQLSTGSV 259
Score = 45 (20.9 bits), Expect = 8.7e-45, Sum P(2) = 8.7e-45
Identities = 46/193 (23%), Positives = 77/193 (39%)
Query: 529 RTDPTQAATDASPQEEEDVLSFDN-QRLKDPEVVCRSNYLPKSANSLHVT--NHSRSHSF 585
+ P Q+ D P + + + DN Q++ + + L KS + ++ NHS F
Sbjct: 265 KVTPLQSPID-KPSDSLSIGNGDNSQQISNSDTPSPPPGLSKSNPVIPISSSNHSARSPF 323
Query: 586 QNSDALTAS-NLNSDPQFVDNSVNDGXXXXXXXXXXXXNGYPEKLARNTSGPGRAVENAF 644
+ A+T S +L SD N + G +P ++ P A E
Sbjct: 324 EG--AVTESQSLFSDNFRHPNPIPSGLPP-----------FPSSPQTSSDWP-TAPEPQS 369
Query: 645 LLSNEGQRMPRELQGDANIDAAVDTGENSIISNILSMD-FDTWDDPLA-LPQNLAKLLSE 702
L ++E +P + + AA G + + L D FD LA L + + +
Sbjct: 370 LFTSE--TIP--VSSSTDWQAAFGFGSSKQPEDDLGFDPFDVTRKALADLIEKELSVQDQ 425
Query: 703 PEKEPSSLKMSSS 715
P P+SL+ SSS
Sbjct: 426 PSLSPTSLQNSSS 438
Score = 41 (19.5 bits), Expect = 2.3e-44, Sum P(2) = 2.3e-44
Identities = 19/64 (29%), Positives = 24/64 (37%)
Query: 707 PSSLKMSSSWKGHNHNQSRFSFARQEESRSHTFDNERSFSGFIQQPKSHSFNQDFAGNRD 766
PSS + SS W QS F+ S S + F G +QP+ F R
Sbjct: 352 PSSPQTSSDWPTAPEPQSLFTSETIPVSSSTDWQAAFGF-GSSKQPEDDLGFDPFDVTRK 410
Query: 767 PLLD 770
L D
Sbjct: 411 ALAD 414
Score = 37 (18.1 bits), Expect = 6.0e-44, Sum P(2) = 6.0e-44
Identities = 9/29 (31%), Positives = 14/29 (48%)
Query: 269 AKPSVKNAANNTASISKDPIPNGSSARSV 297
A P+ N+ N+T S+ P R+V
Sbjct: 454 AAPTNANSLNSTFSVLPQRFPQFQQHRAV 482
>ZFIN|ZDB-GENE-040426-1164 [details] [associations]
symbol:zgc:63566 "zgc:63566" species:7955 "Danio
rerio" [GO:0003676 "nucleic acid binding" evidence=IEA] [GO:0000166
"nucleotide binding" evidence=IEA] [GO:0008270 "zinc ion binding"
evidence=IEA] [GO:0046872 "metal ion binding" evidence=IEA]
[GO:0003723 "RNA binding" evidence=IEA] InterPro:IPR001841
InterPro:IPR000504 InterPro:IPR000571 InterPro:IPR012677
PROSITE:PS50089 PROSITE:PS50102 PROSITE:PS50103 SMART:SM00184
SMART:SM00360 ZFIN:ZDB-GENE-040426-1164 GO:GO:0000166 GO:GO:0046872
GO:GO:0008270 Gene3D:3.30.70.330 GO:GO:0003723 KO:K10643
Gene3D:3.30.40.10 InterPro:IPR013083 HOVERGEN:HBG051043 HSSP:O95628
EMBL:BC054913 IPI:IPI00507902 RefSeq:NP_957463.1 UniGene:Dr.79144
ProteinModelPortal:Q7SYD1 SMR:Q7SYD1 STRING:Q7SYD1 GeneID:394144
KEGG:dre:394144 InParanoid:Q7SYD1 NextBio:20815095
ArrayExpress:Q7SYD1 Uniprot:Q7SYD1
Length = 798
Score = 495 (179.3 bits), Expect = 1.7e-44, Sum P(2) = 1.7e-44
Identities = 119/364 (32%), Positives = 188/364 (51%)
Query: 4 EGEKTCPLCAEEMDLTDQQLKPCKCGYEICVWCWHHIMDMAEKEETEGRCPACRSPYDKE 63
E CPLC E +++ D PC CGY+IC +CWH I + + G CPACR PY ++
Sbjct: 9 EDPMECPLCMEPLEIDDVNFFPCTCGYQICRFCWHRI-----RTDENGLCPACRKPYPED 63
Query: 64 KIVGMAAKCESMERXXXXXXXXXXXXXXXXXX----LSSVRVIQRNLVYIVGLPLNLGDE 119
V E ++R LSSVRV+QRNLV++VGL L D
Sbjct: 64 PAVYKPLSQEELQRIKNEKKQKQNERKQKITENRKHLSSVRVVQRNLVFVVGLSQRLADP 123
Query: 120 DLLQRREYFGQYGKVLKVSMSRTAAGVIQQFPNNTCSVYITYSKEEEAVRCIQSVHGFVL 179
++L+R EYFG++GK+ KV ++ + + Q P+ S Y+TY + E+A+R IQ V+ V+
Sbjct: 124 EVLKRPEYFGKFGKIHKVVINNSTSYAGSQGPS--ASAYVTYIRSEDALRAIQCVNNVVV 181
Query: 180 EGKSLKACFGTTKYCHAWLRNVPCTNPDCLYLHEVGSQEDSFTKDEIISA----YTRSRV 235
+G++LKA GTTKYC +L+++ C PDC+YLHE+G + SFTK+E+ + Y + +
Sbjct: 182 DGRTLKASLGTTKYCSYFLKSMQCPKPDCMYLHELGDEAASFTKEEMQAGKHQEYEQKLL 241
Query: 236 QQITGTTNN-LQRRSGNVLPPPFDDYCHINSVSTAK---PSVKNAANNTASISKD----P 287
Q++ T N LQ +G +S S +K PS++ +S+ P
Sbjct: 242 QELYKTNPNFLQSSTGTGEKTKSKSGTSQSSNSNSKEAWPSLQTTGKMPNGLSEHHKTPP 301
Query: 288 IPNGSSARSVALPAAAS-WGMRASNQQSVATSACSN-GPSKQRPDTVGGALAFSSAVANT 345
+ GS + ++ S G+ + TS C P+ + D++ + +S ++
Sbjct: 302 LDGGSDSENMTPDGLDSDLGLGSITGLPSFTSNCEPVSPTSKPSDSISLSNGETSQISGN 361
Query: 346 PSVS 349
S S
Sbjct: 362 DSPS 365
Score = 37 (18.1 bits), Expect = 1.7e-44, Sum P(2) = 1.7e-44
Identities = 9/27 (33%), Positives = 15/27 (55%)
Query: 392 NGEPASVSLSNQASCPTKYTDKSLNMP 418
NGE + +S ++ S P + SL +P
Sbjct: 352 NGETSQISGNDSPSPPPGLSKPSLVVP 378
>UNIPROTKB|Q5ZJC9 [details] [associations]
symbol:CNOT4 "Uncharacterized protein" species:9031 "Gallus
gallus" [GO:0000166 "nucleotide binding" evidence=IEA] [GO:0008270
"zinc ion binding" evidence=IEA] [GO:0003723 "RNA binding"
evidence=IEA] InterPro:IPR001841 InterPro:IPR000504
InterPro:IPR000571 InterPro:IPR012677 PROSITE:PS50089
PROSITE:PS50102 PROSITE:PS50103 SMART:SM00184 SMART:SM00360
GO:GO:0000166 GO:GO:0046872 GO:GO:0008270 Gene3D:3.30.70.330
GO:GO:0003723 KO:K10643 Gene3D:3.30.40.10 InterPro:IPR013083
CTD:4850 eggNOG:COG5175 HOVERGEN:HBG051043
GeneTree:ENSGT00390000000068 HOGENOM:HOG000065696 EMBL:AADN02005991
EMBL:AADN02005992 EMBL:AJ720505 IPI:IPI00580995
RefSeq:NP_001012829.1 UniGene:Gga.6842 SMR:Q5ZJC9 STRING:Q5ZJC9
Ensembl:ENSGALT00000019099 GeneID:417936 KEGG:gga:417936
NextBio:20821166 Uniprot:Q5ZJC9
Length = 762
Score = 483 (175.1 bits), Expect = 5.9e-44, Sum P(2) = 5.9e-44
Identities = 98/253 (38%), Positives = 148/253 (58%)
Query: 9 CPLCAEEMDLTDQQLKPCKCGYEICVWCWHHIMDMAEKEETEGRCPACRSPYDKEKIVGM 68
CPLC E +++ D PC CGY+IC +CWH I + + G CPACR PY ++ V
Sbjct: 14 CPLCMEPLEIDDINFFPCTCGYQICRFCWHRI-----RTDENGLCPACRKPYPEDPAVYK 68
Query: 69 AAKCESMERXXXXXXXXXXXXXXXXXX----LSSVRVIQRNLVYIVGLPLNLGDEDLLQR 124
E ++R L+SVRV+Q+NLV++VGL L D ++L+R
Sbjct: 69 PLSQEELQRIKNEKKQKQNERKQKISENRKHLASVRVVQKNLVFVVGLSQRLADPEVLKR 128
Query: 125 REYFGQYGKVLKVSMSRTAAGVIQQFPNNTCSVYITYSKEEEAVRCIQSVHGFVLEGKSL 184
EYFG++GK+ KV ++ + + Q P+ S Y+TY + E+A+R IQ V+ V++G++L
Sbjct: 129 PEYFGKFGKIHKVVINNSTSYAGSQGPS--ASAYVTYIRSEDALRAIQCVNNVVVDGRTL 186
Query: 185 KACFGTTKYCHAWLRNVPCTNPDCLYLHEVGSQEDSFTKDEIISA----YTRSRVQQITG 240
KA GTTKYC +L+N+ C PDC+YLHE+G + SFTK+E+ + Y + +Q++
Sbjct: 187 KASLGTTKYCSYFLKNMQCPKPDCMYLHELGDEAASFTKEEMQAGKHQEYEQKLLQELYK 246
Query: 241 TTNN-LQRRSGNV 252
N LQ +G V
Sbjct: 247 LNPNFLQLSTGTV 259
Score = 44 (20.5 bits), Expect = 5.9e-44, Sum P(2) = 5.9e-44
Identities = 26/97 (26%), Positives = 39/97 (40%)
Query: 459 SIDRNATNEHSG-VARASSALPDHGMMKLPRNQGLQPY--NADLCREPLMSPETGKSITS 515
S + +A + G V + S D+ P GL P+ + + +PE TS
Sbjct: 366 SSNHSARSPFEGAVTESQSLFSDNFRHPNPIPSGLPPFPSSPQTSNDWPTAPEPQSLFTS 425
Query: 516 KNDAFVSREPFDWRTDPTQAATD-ASPQEEEDVLSFD 551
+ S DW QAA S +++ED L FD
Sbjct: 426 ETIPVSSST--DW-----QAAFGFGSSKQQEDDLGFD 455
Score = 38 (18.4 bits), Expect = 1.3e-43, Sum P(3) = 1.3e-43
Identities = 18/64 (28%), Positives = 23/64 (35%)
Query: 707 PSSLKMSSSWKGHNHNQSRFSFARQEESRSHTFDNERSFSGFIQQPKSHSFNQDFAGNRD 766
PSS + S+ W QS F+ S S + F QQ F+ F R
Sbjct: 404 PSSPQTSNDWPTAPEPQSLFTSETIPVSSSTDWQAAFGFGSSKQQEDDLGFDP-FDVTRK 462
Query: 767 PLLD 770
L D
Sbjct: 463 ALAD 466
Score = 37 (18.1 bits), Expect = 1.3e-43, Sum P(3) = 1.3e-43
Identities = 8/23 (34%), Positives = 12/23 (52%)
Query: 567 LPKSANSLHVTNHSRSHSFQNSD 589
+ K ++SL + N S NSD
Sbjct: 325 IDKPSDSLSIGNGDSSQQITNSD 347
>UNIPROTKB|E1C4B3 [details] [associations]
symbol:CNOT4 "Uncharacterized protein" species:9031 "Gallus
gallus" [GO:0000166 "nucleotide binding" evidence=IEA] [GO:0008270
"zinc ion binding" evidence=IEA] [GO:0003723 "RNA binding"
evidence=IEA] InterPro:IPR001841 InterPro:IPR000504
InterPro:IPR000571 InterPro:IPR012677 PROSITE:PS50089
PROSITE:PS50102 PROSITE:PS50103 SMART:SM00184 SMART:SM00360
GO:GO:0000166 GO:GO:0046872 GO:GO:0008270 Gene3D:3.30.70.330
GO:GO:0003723 Gene3D:3.30.40.10 InterPro:IPR013083
GeneTree:ENSGT00390000000068 OMA:KCRICPT EMBL:AADN02005991
EMBL:AADN02005992 IPI:IPI00822866 Ensembl:ENSGALT00000038170
ArrayExpress:E1C4B3 Uniprot:E1C4B3
Length = 765
Score = 478 (173.3 bits), Expect = 2.7e-43, Sum P(2) = 2.7e-43
Identities = 91/222 (40%), Positives = 135/222 (60%)
Query: 9 CPLCAEEMDLTDQQLKPCKCGYEICVWCWHHIMDMAEKEETEGRCPACRSPYDKEKIVGM 68
CPLC E +++ D PC CGY+IC +CWH I + + G CPACR PY ++ V
Sbjct: 14 CPLCMEPLEIDDINFFPCTCGYQICRFCWHRI-----RTDENGLCPACRKPYPEDPAVYK 68
Query: 69 AAKCESMERXXXXXXXXXXXXXXXXXX----LSSVRVIQRNLVYIVGLPLNLGDEDLLQR 124
E ++R L+SVRV+Q+NLV++VGL L D ++L+R
Sbjct: 69 PLSQEELQRIKNEKKQKQNERKQKISENRKHLASVRVVQKNLVFVVGLSQRLADPEVLKR 128
Query: 125 REYFGQYGKVLKVSMSRTAAGVIQQFPNNTCSVYITYSKEEEAVRCIQSVHGFVLEGKSL 184
EYFG++GK+ KV ++ + + Q P+ S Y+TY + E+A+R IQ V+ V++G++L
Sbjct: 129 PEYFGKFGKIHKVVINNSTSYAGSQGPS--ASAYVTYIRSEDALRAIQCVNNVVVDGRTL 186
Query: 185 KACFGTTKYCHAWLRNVPCTNPDCLYLHEVGSQEDSFTKDEI 226
KA GTTKYC +L+N+ C PDC+YLHE+G + SFTK+E+
Sbjct: 187 KASLGTTKYCSYFLKNMQCPKPDCMYLHELGDEAASFTKEEM 228
Score = 44 (20.5 bits), Expect = 2.7e-43, Sum P(2) = 2.7e-43
Identities = 26/97 (26%), Positives = 39/97 (40%)
Query: 459 SIDRNATNEHSG-VARASSALPDHGMMKLPRNQGLQPY--NADLCREPLMSPETGKSITS 515
S + +A + G V + S D+ P GL P+ + + +PE TS
Sbjct: 369 SSNHSARSPFEGAVTESQSLFSDNFRHPNPIPSGLPPFPSSPQTSNDWPTAPEPQSLFTS 428
Query: 516 KNDAFVSREPFDWRTDPTQAATD-ASPQEEEDVLSFD 551
+ S DW QAA S +++ED L FD
Sbjct: 429 ETIPVSSST--DW-----QAAFGFGSSKQQEDDLGFD 458
Score = 38 (18.4 bits), Expect = 6.9e-43, Sum P(3) = 6.9e-43
Identities = 18/64 (28%), Positives = 23/64 (35%)
Query: 707 PSSLKMSSSWKGHNHNQSRFSFARQEESRSHTFDNERSFSGFIQQPKSHSFNQDFAGNRD 766
PSS + S+ W QS F+ S S + F QQ F+ F R
Sbjct: 407 PSSPQTSNDWPTAPEPQSLFTSETIPVSSSTDWQAAFGFGSSKQQEDDLGFDP-FDVTRK 465
Query: 767 PLLD 770
L D
Sbjct: 466 ALAD 469
Score = 37 (18.1 bits), Expect = 6.9e-43, Sum P(3) = 6.9e-43
Identities = 8/23 (34%), Positives = 12/23 (52%)
Query: 567 LPKSANSLHVTNHSRSHSFQNSD 589
+ K ++SL + N S NSD
Sbjct: 328 IDKPSDSLSIGNGDSSQQITNSD 350
>FB|FBgn0051716 [details] [associations]
symbol:Cnot4 "Cnot 4 homologue" species:7227 "Drosophila
melanogaster" [GO:0045892 "negative regulation of transcription,
DNA-dependent" evidence=ISS] [GO:0003729 "mRNA binding"
evidence=ISS] [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0000166 "nucleotide binding" evidence=IEA] [GO:0008270 "zinc
ion binding" evidence=IEA] [GO:0051297 "centrosome organization"
evidence=IMP] [GO:0046425 "regulation of JAK-STAT cascade"
evidence=IMP] InterPro:IPR001841 InterPro:IPR000504
InterPro:IPR000571 InterPro:IPR012677 PROSITE:PS50089
PROSITE:PS50102 PROSITE:PS50103 SMART:SM00184 SMART:SM00360
EMBL:AE014134 GO:GO:0051297 GO:GO:0000166 GO:GO:0046872
GO:GO:0008270 GO:GO:0003729 Gene3D:3.30.70.330 KO:K10643
Gene3D:3.30.40.10 InterPro:IPR013083 GeneTree:ENSGT00390000000068
GO:GO:0046425 HSSP:O95628 UniGene:Dm.18584 GeneID:34416
KEGG:dme:Dmel_CG31716 FlyBase:FBgn0051716 GenomeRNAi:34416
NextBio:788389 EMBL:BT003543 RefSeq:NP_723578.1 RefSeq:NP_723579.1
RefSeq:NP_723580.1 RefSeq:NP_723581.1 RefSeq:NP_723582.1 SMR:Q9VKX1
MINT:MINT-965323 STRING:Q9VKX1 EnsemblMetazoa:FBtr0080009
EnsemblMetazoa:FBtr0080010 EnsemblMetazoa:FBtr0080011
EnsemblMetazoa:FBtr0080012 EnsemblMetazoa:FBtr0080013
UCSC:CG31716-RA InParanoid:Q9VKX1 Uniprot:Q9VKX1
Length = 1051
Score = 447 (162.4 bits), Expect = 6.1e-39, P = 6.1e-39
Identities = 115/335 (34%), Positives = 172/335 (51%)
Query: 2 SDEGEKTCPLCAEEMDLTDQQLKPCKCGYEICVWCWHHIMDMAEKEETEGRCPACRSPYD 61
S++ CPLC E +++ D PC CGY+IC +CWH I +E + CPACR Y
Sbjct: 6 SNDDAVECPLCMEPLEVDDLTFFPCTCGYQICRFCWHRI----RTDENK-LCPACRKEYP 60
Query: 62 KEKIVGMAAKCESM----ERXXXXXXXXXXXXXXXXXXLSSVRVIQRNLVYIVGLPLNLG 117
+ E M + L++VRV+Q+NLV++VGLP L
Sbjct: 61 ENPADFKPLSQEEMIAFKSQKRQRDQQRKQKITENRKHLANVRVVQKNLVFVVGLPPRLA 120
Query: 118 DEDLLQRREYFGQYGKVLKVSM--SRTAAGVIQQFPNNTCSVYITYSKEEEAVRCIQSVH 175
D D+L++ EYFG+YGK+ KV + S T AGV Q P+ S Y+TY +A+R IQSV+
Sbjct: 121 DADILKKHEYFGKYGKIHKVVINPSTTYAGV--QGPS--ASAYVTYVNNSDALRAIQSVN 176
Query: 176 GFVLEGKSLKACFGTTKYCHAWLRNVPCTNPDCLYLHEVGSQEDSFTKDEIISAYTRSRV 235
+++G+ +K GTTKYC +++N C DC+YLHE+G E SFTK+E+
Sbjct: 177 NIMIDGRLIKTSLGTTKYCSHFMKNQQCPKGDCMYLHELGDPEASFTKEEM--------- 227
Query: 236 QQITGTTNNLQRRSGNVLPPPFDDYCHINSVSTAKPSVKNAANNTASISKDPIPNGSSAR 295
Q G ++R + L V+ A PS +A+++++ NGSSA
Sbjct: 228 HQ--GKHLEYEKRLHDTLIASLGPNA-TGIVNVAIPSSSSASSSSSGSGT----NGSSAS 280
Query: 296 SVALPAAASWGMRAS---NQQSVATSACSNGPSKQ 327
A A + S +++ AT+ S+G SK+
Sbjct: 281 GNAQQKEAWPSLSVSPINGKEAAATATSSSGKSKR 315
>WB|WBGene00003827 [details] [associations]
symbol:ntl-4 species:6239 "Caenorhabditis elegans"
[GO:0003676 "nucleic acid binding" evidence=IEA] [GO:0009792
"embryo development ending in birth or egg hatching" evidence=IMP]
[GO:0040010 "positive regulation of growth rate" evidence=IMP]
[GO:0040017 "positive regulation of locomotion" evidence=IMP]
[GO:0000003 "reproduction" evidence=IMP] InterPro:IPR001841
InterPro:IPR000504 InterPro:IPR003954 InterPro:IPR012677
Pfam:PF00076 PROSITE:PS50089 PROSITE:PS50102 SMART:SM00361
GO:GO:0009792 GO:GO:0040010 GO:GO:0000166 GO:GO:0008270
Gene3D:3.30.70.330 GO:GO:0040017 GO:GO:0000003 GO:GO:0003676
KO:K10643 Gene3D:3.30.40.10 InterPro:IPR013083
GeneTree:ENSGT00390000000068 EMBL:FO080908 HSSP:O95628
GeneID:177580 KEGG:cel:CELE_C49H3.5 UCSC:C49H3.5a CTD:177580
HOGENOM:HOG000021187 NextBio:897454 RefSeq:NP_741453.1
ProteinModelPortal:Q9GYQ9 SMR:Q9GYQ9 DIP:DIP-27225N IntAct:Q9GYQ9
MINT:MINT-1111747 STRING:Q9GYQ9 PRIDE:Q9GYQ9
EnsemblMetazoa:C49H3.5a.1 EnsemblMetazoa:C49H3.5a.2
WormBase:C49H3.5a InParanoid:Q9GYQ9 OMA:NSMLDGR ArrayExpress:Q9GYQ9
Uniprot:Q9GYQ9
Length = 796
Score = 437 (158.9 bits), Expect = 7.0e-39, Sum P(2) = 7.0e-39
Identities = 87/232 (37%), Positives = 131/232 (56%)
Query: 2 SDEG-EKTCPLCAEEMDLTDQQLKPCKCGYEICVWCWHHIMDMAEKEETEGRCPACRSPY 60
SDE +K CPLC E ++L D PCKC Y+IC +CWH I + + G CPACR PY
Sbjct: 5 SDESCDKECPLCMETLELDDINFYPCKCEYQICRFCWHRI-----RTDENGLCPACRQPY 59
Query: 61 DKEKIVGMAAKCESMERXXXXXXXXXXXX----XXXXXXLSSVRVIQRNLVYIVGLPLNL 116
++ + + + + L + RV+Q+NLVY+VGL +
Sbjct: 60 PEDPVNFKPMTTDDVRKHKDEQRLKKQAEKLKLSDARQYLCNYRVLQKNLVYVVGLSPRV 119
Query: 117 GDEDLLQRREYFGQYGKVLKVSMSRTAAGVIQQFPNNTCSVYITYSKEEEAVRCIQSVHG 176
D ++L++ EYFG+YGK+ K+ S T + P + + Y+TY + ++A+R IQ VH
Sbjct: 120 ADPEILKKNEYFGRYGKIQKIVTSATPSLPAPHLPPSH-TAYVTYKRVDDALRAIQGVHN 178
Query: 177 FVLEGKSLKACFGTTKYCHAWLRNVPCTNP--DCLYLHEVGSQEDSFTKDEI 226
+L+G+ +KA GTTKYC ++L + C P +C+YLHE E SFTKD++
Sbjct: 179 SMLDGRLVKASLGTTKYCSSFLNSRKCFKPVGECMYLHENAEAEISFTKDDM 230
Score = 51 (23.0 bits), Expect = 7.0e-39, Sum P(2) = 7.0e-39
Identities = 24/108 (22%), Positives = 40/108 (37%)
Query: 381 RQHFGSEPPTPNGEPASVSLSNQASCPTKYTDKSLNMPPNVIHSSDTTD---H-SCLSGP 436
R FG PP G P++ S P T +S S H S +
Sbjct: 682 RVPFGMAPPPGLGGPSTNRSSTTQQAPPHMTQQSQQQQQQQQSSMGLFGMGGHQSMMQDH 741
Query: 437 EKEENVTADVKMQGLCSDVSAMSIDRNATNE--HSGVARASSALPDHG 482
+ ++ +A + L +V+ +D N+ + H R+S+ P G
Sbjct: 742 QSQQPQSAQDAFKALLPNVNVRFMDDNSMSRWSHENSLRSSAVPPPPG 789
>CGD|CAL0000791 [details] [associations]
symbol:NOT4 species:5476 "Candida albicans" [GO:0009405
"pathogenesis" evidence=IMP] [GO:0030015 "CCR4-NOT core complex"
evidence=ISS] [GO:0000152 "nuclear ubiquitin ligase complex"
evidence=ISS] [GO:0016567 "protein ubiquitination" evidence=ISS]
[GO:0004842 "ubiquitin-protein ligase activity" evidence=ISS]
[GO:0071216 "cellular response to biotic stimulus" evidence=IMP]
[GO:0036244 "cellular response to neutral pH" evidence=IMP]
[GO:0030447 "filamentous growth" evidence=IMP] [GO:0005737
"cytoplasm" evidence=IEA] [GO:0043565 "sequence-specific DNA
binding" evidence=IEA] [GO:0036178 "filamentous growth of a
population of unicellular organisms in response to neutral pH"
evidence=IMP] [GO:0036180 "filamentous growth of a population of
unicellular organisms in response to biotic stimulus" evidence=IMP]
[GO:0044011 "single-species biofilm formation on inanimate
substrate" evidence=IMP] [GO:0032968 "positive regulation of
transcription elongation from RNA polymerase II promoter"
evidence=IEA] [GO:0031087 "deadenylation-independent decapping of
nuclear-transcribed mRNA" evidence=IEA] [GO:0000209 "protein
polyubiquitination" evidence=IEA] InterPro:IPR000504
InterPro:IPR000571 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
PROSITE:PS50103 SMART:SM00360 CGD:CAL0000791 GO:GO:0071216
GO:GO:0036244 GO:GO:0036180 GO:GO:0036178 GO:GO:0009405
GO:GO:0000166 GO:GO:0046872 GO:GO:0008270 Gene3D:3.30.70.330
GO:GO:0003723 KO:K10643 Gene3D:3.30.40.10 InterPro:IPR013083
GO:GO:0004842 GO:GO:0044011 EMBL:AACQ01000131 GO:GO:0000152
GO:GO:0030015 eggNOG:COG5175 RefSeq:XP_713212.1
ProteinModelPortal:Q59UI5 STRING:Q59UI5 GeneID:3645115
KEGG:cal:CaO19.2379 Uniprot:Q59UI5
Length = 553
Score = 363 (132.8 bits), Expect = 1.2e-30, P = 1.2e-30
Identities = 100/317 (31%), Positives = 153/317 (48%)
Query: 16 MDLTDQQLKPCKCGYEICVWCWHHIMDMAEKEETEGRCPACRSPYDKE-KIVG------M 68
MD++D+ KPC CGY+IC +C+++I E C E K V M
Sbjct: 1 MDISDKNFKPCPCGYQICQFCYNNIRQNPELNGRCPGCRRLYDDESVEYKTVSAEEYKLM 60
Query: 69 AAKCESMERXXXXXXXXXXXXXXXXXX-LSSVRVIQRNLVYIVGL--PLNLGD-EDLLQR 124
K E +R L+ +RV+Q+NLVY+ GL P N D +L+
Sbjct: 61 QLKKEKRDREKKQKEKEKKEMEMVNKKHLAGLRVVQKNLVYVTGLNPPCNPDDLHSVLRS 120
Query: 125 REYFGQYGKVLKVSMSR---TAAGVIQQFPNNTCSVYITYSKEEEAVRCIQSVHGFVLEG 181
+YFGQYGK+ K+ + + T N VY+T++++E+A+RCI + G + +G
Sbjct: 121 DKYFGQYGKISKIVIYKKTPTTQTSTHHHQNPGLVVYVTFTRKEDALRCITELDGSLCDG 180
Query: 182 KSLKACFGTTKYCHAWLRNVPCTNPDCLYLHEVGSQEDSFTKDEIISAY-TRSRVQQITG 240
+ L+A GTTKYC ++LR PC NP+C++LHE G + DS+T+ ++ + + + +
Sbjct: 181 RVLRAAHGTTKYCSSYLRGQPCPNPNCMFLHEPGEEADSYTRKDLSTQQGIKMGMTARSH 240
Query: 241 TTNNLQRRSGNVLPPPF-DDYCHINSVSTAKPSVKN-AANNTASISKDPIPNGSS--ARS 296
TT+ + S N D H + PS + AA T S S P N + A S
Sbjct: 241 TTSFGEESSNNSQSNQAGSDDDHHEAHKEHLPSTAHWAAAGTTSGSNSPSVNNNIPLANS 300
Query: 297 VALPAAASWGMRASNQQ 313
A P +R QQ
Sbjct: 301 AAFPTLGEI-VRDQKQQ 316
>UNIPROTKB|Q59UI5 [details] [associations]
symbol:NOT4 "Potential mRNA deadenylase and CCR4-NOT
complex subunit Mot2p" species:237561 "Candida albicans SC5314"
[GO:0000152 "nuclear ubiquitin ligase complex" evidence=ISS]
[GO:0004842 "ubiquitin-protein ligase activity" evidence=ISS]
[GO:0009405 "pathogenesis" evidence=IMP] [GO:0016567 "protein
ubiquitination" evidence=ISS] [GO:0030015 "CCR4-NOT core complex"
evidence=ISS] [GO:0030447 "filamentous growth" evidence=IMP]
[GO:0036178 "filamentous growth of a population of unicellular
organisms in response to neutral pH" evidence=IMP] [GO:0036180
"filamentous growth of a population of unicellular organisms in
response to biotic stimulus" evidence=IMP] [GO:0036244 "cellular
response to neutral pH" evidence=IMP] [GO:0044011 "single-species
biofilm formation on inanimate substrate" evidence=IMP] [GO:0071216
"cellular response to biotic stimulus" evidence=IMP]
InterPro:IPR000504 InterPro:IPR000571 InterPro:IPR012677
Pfam:PF00076 PROSITE:PS50102 PROSITE:PS50103 SMART:SM00360
CGD:CAL0000791 GO:GO:0071216 GO:GO:0036244 GO:GO:0036180
GO:GO:0036178 GO:GO:0009405 GO:GO:0000166 GO:GO:0046872
GO:GO:0008270 Gene3D:3.30.70.330 GO:GO:0003723 KO:K10643
Gene3D:3.30.40.10 InterPro:IPR013083 GO:GO:0004842 GO:GO:0044011
EMBL:AACQ01000131 GO:GO:0000152 GO:GO:0030015 eggNOG:COG5175
RefSeq:XP_713212.1 ProteinModelPortal:Q59UI5 STRING:Q59UI5
GeneID:3645115 KEGG:cal:CaO19.2379 Uniprot:Q59UI5
Length = 553
Score = 363 (132.8 bits), Expect = 1.2e-30, P = 1.2e-30
Identities = 100/317 (31%), Positives = 153/317 (48%)
Query: 16 MDLTDQQLKPCKCGYEICVWCWHHIMDMAEKEETEGRCPACRSPYDKE-KIVG------M 68
MD++D+ KPC CGY+IC +C+++I E C E K V M
Sbjct: 1 MDISDKNFKPCPCGYQICQFCYNNIRQNPELNGRCPGCRRLYDDESVEYKTVSAEEYKLM 60
Query: 69 AAKCESMERXXXXXXXXXXXXXXXXXX-LSSVRVIQRNLVYIVGL--PLNLGD-EDLLQR 124
K E +R L+ +RV+Q+NLVY+ GL P N D +L+
Sbjct: 61 QLKKEKRDREKKQKEKEKKEMEMVNKKHLAGLRVVQKNLVYVTGLNPPCNPDDLHSVLRS 120
Query: 125 REYFGQYGKVLKVSMSR---TAAGVIQQFPNNTCSVYITYSKEEEAVRCIQSVHGFVLEG 181
+YFGQYGK+ K+ + + T N VY+T++++E+A+RCI + G + +G
Sbjct: 121 DKYFGQYGKISKIVIYKKTPTTQTSTHHHQNPGLVVYVTFTRKEDALRCITELDGSLCDG 180
Query: 182 KSLKACFGTTKYCHAWLRNVPCTNPDCLYLHEVGSQEDSFTKDEIISAY-TRSRVQQITG 240
+ L+A GTTKYC ++LR PC NP+C++LHE G + DS+T+ ++ + + + +
Sbjct: 181 RVLRAAHGTTKYCSSYLRGQPCPNPNCMFLHEPGEEADSYTRKDLSTQQGIKMGMTARSH 240
Query: 241 TTNNLQRRSGNVLPPPF-DDYCHINSVSTAKPSVKN-AANNTASISKDPIPNGSS--ARS 296
TT+ + S N D H + PS + AA T S S P N + A S
Sbjct: 241 TTSFGEESSNNSQSNQAGSDDDHHEAHKEHLPSTAHWAAAGTTSGSNSPSVNNNIPLANS 300
Query: 297 VALPAAASWGMRASNQQ 313
A P +R QQ
Sbjct: 301 AAFPTLGEI-VRDQKQQ 316
>SGD|S000000870 [details] [associations]
symbol:MOT2 "Ubiquitin-protein ligase subunit of the CCR4-NOT
complex" species:4932 "Saccharomyces cerevisiae" [GO:0000209
"protein polyubiquitination" evidence=IMP;IDA] [GO:0005634
"nucleus" evidence=IEA] [GO:0043565 "sequence-specific DNA binding"
evidence=IDA] [GO:0016567 "protein ubiquitination" evidence=IDA]
[GO:0046872 "metal ion binding" evidence=IEA] [GO:0006355
"regulation of transcription, DNA-dependent" evidence=IEA]
[GO:0006351 "transcription, DNA-dependent" evidence=IEA]
[GO:0005737 "cytoplasm" evidence=IEA;IDA] [GO:0003723 "RNA binding"
evidence=IEA] [GO:0030015 "CCR4-NOT core complex" evidence=IPI]
[GO:0032968 "positive regulation of transcription elongation from
RNA polymerase II promoter" evidence=IMP;IDA;IPI] [GO:0008270 "zinc
ion binding" evidence=IEA] [GO:0003676 "nucleic acid binding"
evidence=IEA] [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0031087 "deadenylation-independent decapping of
nuclear-transcribed mRNA" evidence=IMP] [GO:0004842
"ubiquitin-protein ligase activity" evidence=IDA]
InterPro:IPR001841 InterPro:IPR000504 InterPro:IPR000571
InterPro:IPR003954 InterPro:IPR012677 PROSITE:PS50089
PROSITE:PS50102 PROSITE:PS50103 SMART:SM00184 SMART:SM00361
SGD:S000000870 Prosite:PS00518 GO:GO:0005634 GO:GO:0005737
GO:GO:0000166 GO:GO:0046872 GO:GO:0043565 GO:GO:0008270
Gene3D:3.30.70.330 GO:GO:0006351 GO:GO:0003723 EMBL:BK006939
EMBL:U18813 RefSeq:NP_010991.3 GeneID:856799 KEGG:sce:YER068W
KO:K10643 Gene3D:3.30.40.10 InterPro:IPR013083 GO:GO:0004842
GO:GO:0000209 GO:GO:0032968 GO:GO:0030015 eggNOG:COG5175
GeneTree:ENSGT00390000000068 GO:GO:0031087 EMBL:M96736 EMBL:L26309
PIR:A56015 RefSeq:NP_010994.3 ProteinModelPortal:P34909 SMR:P34909
DIP:DIP-2255N IntAct:P34909 MINT:MINT-617490 STRING:P34909
PaxDb:P34909 PeptideAtlas:P34909 EnsemblFungi:YER068W GeneID:856802
KEGG:sce:YER071C CYGD:YER068w HOGENOM:HOG000248860 OMA:DEEDYCP
OrthoDB:EOG42RHH7 NextBio:983041 Genevestigator:P34909
GermOnline:YER068W Uniprot:P34909
Length = 587
Score = 322 (118.4 bits), Expect = 7.9e-26, P = 7.9e-26
Identities = 86/281 (30%), Positives = 140/281 (49%)
Query: 96 LSSVRVIQRNLVYIVGLPLNLGDEDL---LQRREYFGQYGKVLKVSMSRTAAG----VIQ 148
LS RVIQ+NLVY+VG+ + E++ L+ +YFGQYGK+ K+ ++R +
Sbjct: 128 LSGTRVIQKNLVYVVGINPPVPYEEVAPTLKSEKYFGQYGKINKIVVNRKTPHSNNTTSE 187
Query: 149 QFPNNT--CSVYITYSKEEEAVRCIQSVHGFVLEGKSLKACFGTTKYCHAWLRNVPCTNP 206
+ +++ VYIT+ +++A RCI V G ++G+ +KA +GTTKYC ++LR +PC NP
Sbjct: 188 HYHHHSPGYGVYITFGSKDDAARCIAQVDGTYMDGRLIKAAYGTTKYCSSYLRGLPCPNP 247
Query: 207 DCLYLHEVGSQEDSFTKDEIISAYTRSRVQQITGTTNNLQRRSG---NVLPPPFDDYCHI 263
+C++LHE G + DSF K E+ + + + QQ +G T RSG N+ ++
Sbjct: 248 NCMFLHEPGEEADSFNKREL---HNKQQAQQQSGGT--AFTRSGIHNNISTSTAGSNTNL 302
Query: 264 ---NSVSTAKPSVKNA-------AN-NTASISKDPIPNGSSARSVALPAAASWGMRAS-N 311
N T P+ A N T ++ P+P GS+ V A + S N
Sbjct: 303 LSENFTGTPSPAAMRAQLHHDSHTNAGTPVLTPAPVPAGSNPWGVTQSATPVTSINLSKN 362
Query: 312 QQSVATSACSNGPSKQRPDTVGGALAFSSAVANTPSVSTLH 352
S+ ++ T + ++ NT + S H
Sbjct: 363 SSSINLPTLNDSLGHHTTPTTENTITSTTTTTNTNATSHSH 403
Score = 256 (95.2 bits), Expect = 1.6e-18, P = 1.6e-18
Identities = 58/155 (37%), Positives = 85/155 (54%)
Query: 1 MSDEGEKTCPLCAEEMDLTDQQLKPCKCGYEICVWCWHHIMDMAEKEETEGRCPACRSPY 60
+S++ E CPLC E MD+TD+ PC CGY+IC +C+++I + E GRCPACR Y
Sbjct: 25 LSEDEEDYCPLCIEPMDITDKNFFPCPCGYQICQFCYNNIR---QNPELNGRCPACRRKY 81
Query: 61 DKEKI--VGMAAKCESMERXXXXXXXXXXXXX---------XXXXXLSSVRVIQRNLVYI 109
D E + V ++ + MER LS RVIQ+NLVY+
Sbjct: 82 DDENVRYVTLSPEELKMERAKLARKEKERKHREKERKENEYTNRKHLSGTRVIQKNLVYV 141
Query: 110 VGLPLNLGDEDL---LQRREYFGQYGKVLKVSMSR 141
VG+ + E++ L+ +YFGQYGK+ K+ ++R
Sbjct: 142 VGINPPVPYEEVAPTLKSEKYFGQYGKINKIVVNR 176
>TAIR|locus:2027262 [details] [associations]
symbol:AT1G74870 species:3702 "Arabidopsis thaliana"
[GO:0005794 "Golgi apparatus" evidence=ISM] [GO:0008270 "zinc ion
binding" evidence=IEA] [GO:0042991 "transcription factor import
into nucleus" evidence=RCA] InterPro:IPR001841 PROSITE:PS50089
EMBL:CP002684 GenomeReviews:CT485782_GR GO:GO:0008270
Gene3D:3.30.40.10 InterPro:IPR013083 EMBL:AC008263 EMBL:AC013258
eggNOG:COG5175 HSSP:O95628 EMBL:BT010439 EMBL:AK175181
IPI:IPI00532990 PIR:C96778 RefSeq:NP_177625.1 UniGene:At.34831
ProteinModelPortal:Q9S7I7 SMR:Q9S7I7 PRIDE:Q9S7I7
EnsemblPlants:AT1G74870.1 GeneID:843826 KEGG:ath:AT1G74870
TAIR:At1g74870 HOGENOM:HOG000153442 OMA:SENEARC PhylomeDB:Q9S7I7
ProtClustDB:CLSN2914586 ArrayExpress:Q9S7I7 Genevestigator:Q9S7I7
Uniprot:Q9S7I7
Length = 289
Score = 161 (61.7 bits), Expect = 7.2e-09, P = 7.2e-09
Identities = 27/59 (45%), Positives = 38/59 (64%)
Query: 4 EGEKTCPLCAEEMDLTDQQLKPCKCGYEICVWCWHHIMDMAEKEETEGRCPACRSPYDK 62
+G++ CP+C+E MD TD + +PC CG+ IC++C + I E E RCPACR Y K
Sbjct: 207 DGDEECPICSELMDATDLEFEPCTCGFRICLFCHNKI------SENEARCPACRKDYKK 259
>TAIR|locus:2097930 [details] [associations]
symbol:AT3G48070 species:3702 "Arabidopsis thaliana"
[GO:0005634 "nucleus" evidence=ISM] [GO:0008270 "zinc ion binding"
evidence=IEA] InterPro:IPR001841 PROSITE:PS50089 EMBL:CP002686
GO:GO:0008270 Gene3D:3.30.40.10 InterPro:IPR013083 IPI:IPI00657445
RefSeq:NP_001030828.1 UniGene:At.23454 ProteinModelPortal:F4JCT1
SMR:F4JCT1 PRIDE:F4JCT1 EnsemblPlants:AT3G48070.2 GeneID:823962
KEGG:ath:AT3G48070 OMA:APDDIFR PhylomeDB:F4JCT1 Uniprot:F4JCT1
Length = 350
Score = 156 (60.0 bits), Expect = 4.8e-08, P = 4.8e-08
Identities = 25/58 (43%), Positives = 36/58 (62%)
Query: 8 TCPLCAEEMDLTDQQLKPCKCGYEICVWCWHHIMDMAEKEETEGRCPACRSPYDKEKI 65
+CP+C E++DLTD PC CG+ +C++C I D +GRCP CR PY++ I
Sbjct: 243 SCPICYEDLDLTDSNFLPCPCGFRLCLFCHKTICD------GDGRCPGCRKPYERNTI 294
>TAIR|locus:2170708 [details] [associations]
symbol:AT5G62910 species:3702 "Arabidopsis thaliana"
[GO:0005634 "nucleus" evidence=ISM] [GO:0008270 "zinc ion binding"
evidence=IEA] InterPro:IPR001841 PROSITE:PS50089 EMBL:CP002688
GO:GO:0008270 Gene3D:3.30.40.10 InterPro:IPR013083 EMBL:AB009053
HSSP:O95628 EMBL:BT024718 IPI:IPI00543424 RefSeq:NP_201096.1
UniGene:At.29027 ProteinModelPortal:Q9FM05 SMR:Q9FM05 PRIDE:Q9FM05
EnsemblPlants:AT5G62910.1 GeneID:836411 KEGG:ath:AT5G62910
TAIR:At5g62910 HOGENOM:HOG000083855 InParanoid:Q9FM05 OMA:HHESFME
PhylomeDB:Q9FM05 ProtClustDB:CLSN2684023 Genevestigator:Q9FM05
Uniprot:Q9FM05
Length = 327
Score = 155 (59.6 bits), Expect = 5.2e-08, P = 5.2e-08
Identities = 24/58 (41%), Positives = 36/58 (62%)
Query: 8 TCPLCAEEMDLTDQQLKPCKCGYEICVWCWHHIMDMAEKEETEGRCPACRSPYDKEKI 65
+CP+C E++DLTD PC CG+ +C++C I D +GRCP CR PY++ +
Sbjct: 251 SCPICYEDLDLTDSNFLPCPCGFRLCLFCHKTICD------GDGRCPGCRKPYERNMV 302
Parameters:
V=100
filter=SEG
E=0.001
ctxfactor=1.00
Query ----- As Used ----- ----- Computed ----
Frame MatID Matrix name Lambda K H Lambda K H
+0 0 BLOSUM62 0.313 0.128 0.381 same same same
Q=9,R=2 0.244 0.0300 0.180 n/a n/a n/a
Query
Frame MatID Length Eff.Length E S W T X E2 S2
+0 0 810 751 0.00090 121 3 11 23 0.46 34
37 0.45 37
Statistics:
Database: /share/blast/go-seqdb.fasta
Title: go_20130330-seqdb.fasta
Posted: 5:47:42 AM PDT Apr 1, 2013
Created: 5:47:42 AM PDT Apr 1, 2013
Format: XDF-1
# of letters in database: 169,044,731
# of sequences in database: 368,745
# of database sequences satisfying E: 27
No. of states in DFA: 623 (66 KB)
Total size of DFA: 409 KB (2197 KB)
Time to generate neighborhood: 0.00u 0.00s 0.00t Elapsed: 00:00:00
No. of threads or processors used: 24
Search cpu time: 75.37u 0.10s 75.47t Elapsed: 00:00:04
Total cpu time: 75.37u 0.10s 75.47t Elapsed: 00:00:04
Start: Mon May 20 17:16:48 2013 End: Mon May 20 17:16:52 2013