Query 003574
Match_columns 810
No_of_seqs 250 out of 1201
Neff 3.6
Searched_HMMs 46136
Date Fri Mar 29 02:00:22 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/003574.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/003574hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 COG5175 MOT2 Transcriptional r 100.0 9.1E-77 2E-81 621.9 14.4 223 2-232 10-243 (480)
2 KOG2068 MOT2 transcription fac 100.0 1.1E-57 2.4E-62 479.4 11.5 299 29-343 1-309 (327)
3 PF14570 zf-RING_4: RING/Ubox 99.8 1.7E-21 3.6E-26 157.1 2.8 48 9-61 1-48 (48)
4 PLN03134 glycine-rich RNA-bind 99.5 9E-14 1.9E-18 133.1 11.2 89 95-192 26-114 (144)
5 TIGR01661 ELAV_HUD_SF ELAV/HuD 99.5 8.3E-14 1.8E-18 145.4 11.0 79 106-192 271-349 (352)
6 PF00076 RRM_1: RNA recognitio 99.5 8.8E-14 1.9E-18 112.0 8.6 70 107-185 1-70 (70)
7 TIGR01661 ELAV_HUD_SF ELAV/HuD 99.4 5.1E-13 1.1E-17 139.5 10.7 110 104-232 3-112 (352)
8 PF14259 RRM_6: RNA recognitio 99.3 6E-12 1.3E-16 103.4 9.1 70 107-185 1-70 (70)
9 KOG0125 Ataxin 2-binding prote 99.3 2.5E-12 5.4E-17 137.3 8.0 80 103-192 95-174 (376)
10 smart00362 RRM_2 RNA recogniti 99.3 2.6E-11 5.7E-16 95.0 8.8 72 106-187 1-72 (72)
11 TIGR01659 sex-lethal sex-letha 99.3 1.7E-11 3.7E-16 132.5 10.1 83 101-191 104-186 (346)
12 KOG0114 Predicted RNA-binding 99.2 1.9E-11 4.2E-16 113.7 8.7 83 97-190 9-93 (124)
13 PLN03120 nucleic acid binding 99.2 2.8E-11 6E-16 126.8 10.2 76 103-190 3-78 (260)
14 TIGR01659 sex-lethal sex-letha 99.2 5E-11 1.1E-15 128.9 10.8 83 102-192 191-275 (346)
15 KOG0148 Apoptosis-promoting RN 99.2 2.9E-11 6.4E-16 126.8 8.6 78 101-192 161-238 (321)
16 cd00590 RRM RRM (RNA recogniti 99.2 9.5E-11 2.1E-15 92.3 9.5 74 106-188 1-74 (74)
17 COG0724 RNA-binding proteins ( 99.2 6.5E-11 1.4E-15 111.9 9.7 80 104-191 115-194 (306)
18 TIGR01628 PABP-1234 polyadenyl 99.2 3.9E-11 8.6E-16 134.5 9.6 83 101-192 282-364 (562)
19 TIGR01645 half-pint poly-U bin 99.2 5.2E-11 1.1E-15 136.8 10.6 82 104-193 204-285 (612)
20 TIGR01645 half-pint poly-U bin 99.2 4.6E-11 9.9E-16 137.3 10.0 78 104-189 107-184 (612)
21 smart00360 RRM RNA recognition 99.2 7.6E-11 1.7E-15 91.8 8.0 71 109-187 1-71 (71)
22 TIGR01622 SF-CC1 splicing fact 99.2 8.4E-11 1.8E-15 127.7 10.3 79 104-190 186-264 (457)
23 KOG0122 Translation initiation 99.2 7.9E-11 1.7E-15 122.2 9.1 82 103-192 188-269 (270)
24 TIGR01642 U2AF_lg U2 snRNP aux 99.1 2E-10 4.3E-15 126.3 11.9 81 103-191 294-374 (509)
25 KOG0107 Alternative splicing f 99.1 9.5E-11 2.1E-15 117.0 7.7 78 104-194 10-87 (195)
26 TIGR01628 PABP-1234 polyadenyl 99.1 1.7E-10 3.8E-15 129.4 10.1 110 106-232 2-111 (562)
27 KOG0111 Cyclophilin-type pepti 99.1 6.2E-11 1.3E-15 121.7 4.1 85 100-192 6-90 (298)
28 KOG0148 Apoptosis-promoting RN 99.1 1.8E-10 3.8E-15 121.1 7.1 80 106-193 64-143 (321)
29 PF13893 RRM_5: RNA recognitio 99.1 4.8E-10 1E-14 89.8 8.0 55 125-189 2-56 (56)
30 KOG4206 Spliceosomal protein s 99.1 2.8E-10 6E-15 116.7 8.0 88 100-195 4-93 (221)
31 TIGR01649 hnRNP-L_PTB hnRNP-L/ 99.1 4.9E-10 1.1E-14 124.8 10.5 77 103-192 274-351 (481)
32 KOG0149 Predicted RNA-binding 99.1 1.9E-10 4E-15 118.9 6.4 77 103-188 11-87 (247)
33 KOG0121 Nuclear cap-binding pr 99.0 3E-10 6.5E-15 109.1 6.7 78 103-188 35-112 (153)
34 PLN03213 repressor of silencin 99.0 4E-10 8.7E-15 125.3 8.4 79 105-195 11-91 (759)
35 TIGR01622 SF-CC1 splicing fact 99.0 9.5E-10 2.1E-14 119.6 10.3 118 103-232 88-209 (457)
36 smart00361 RRM_1 RNA recogniti 99.0 1.2E-09 2.6E-14 92.1 7.8 64 118-187 2-70 (70)
37 TIGR01648 hnRNP-R-Q heterogene 99.0 9.2E-10 2E-14 126.2 9.3 102 103-230 57-159 (578)
38 PLN03121 nucleic acid binding 99.0 1.6E-09 3.4E-14 112.8 9.4 75 104-190 5-79 (243)
39 KOG0117 Heterogeneous nuclear 99.0 1.7E-09 3.8E-14 119.3 9.4 106 100-230 79-185 (506)
40 KOG0126 Predicted RNA-binding 98.9 2.1E-10 4.5E-15 115.3 1.4 77 104-188 35-111 (219)
41 KOG0130 RNA-binding protein RB 98.9 1E-09 2.2E-14 106.3 6.1 86 98-191 66-151 (170)
42 TIGR01648 hnRNP-R-Q heterogene 98.9 2.7E-09 5.9E-14 122.4 10.1 73 105-193 234-308 (578)
43 KOG4207 Predicted splicing fac 98.9 9E-10 2E-14 112.5 5.5 77 105-189 14-90 (256)
44 KOG0145 RNA-binding protein EL 98.9 5.2E-09 1.1E-13 109.9 9.5 81 104-192 278-358 (360)
45 KOG0131 Splicing factor 3b, su 98.9 2E-09 4.3E-14 108.2 5.8 81 102-190 7-87 (203)
46 KOG0105 Alternative splicing f 98.9 2.3E-09 5E-14 108.2 6.2 78 105-193 7-84 (241)
47 TIGR01649 hnRNP-L_PTB hnRNP-L/ 98.9 6.3E-09 1.4E-13 116.0 9.6 79 104-192 394-480 (481)
48 KOG0108 mRNA cleavage and poly 98.9 4.5E-09 9.7E-14 117.2 8.0 80 105-192 19-98 (435)
49 KOG0113 U1 small nuclear ribon 98.8 8.6E-09 1.9E-13 109.6 9.2 86 105-198 102-187 (335)
50 KOG0144 RNA-binding protein CU 98.8 4.3E-09 9.3E-14 116.0 5.1 86 100-194 120-208 (510)
51 KOG0127 Nucleolar protein fibr 98.8 1.5E-08 3.3E-13 114.1 8.1 80 104-192 117-196 (678)
52 KOG0127 Nucleolar protein fibr 98.7 2.5E-08 5.5E-13 112.4 8.8 115 105-228 293-424 (678)
53 TIGR01642 U2AF_lg U2 snRNP aux 98.6 7.8E-08 1.7E-12 106.0 9.0 83 104-191 409-501 (509)
54 KOG0145 RNA-binding protein EL 98.6 8.5E-08 1.8E-12 100.9 8.0 110 104-232 41-150 (360)
55 KOG0117 Heterogeneous nuclear 98.6 7.1E-08 1.5E-12 106.9 7.2 72 104-191 259-330 (506)
56 KOG0132 RNA polymerase II C-te 98.6 1.1E-07 2.4E-12 110.5 8.0 108 89-218 402-513 (894)
57 KOG2068 MOT2 transcription fac 98.6 3.6E-08 7.7E-13 106.2 3.4 55 7-67 250-304 (327)
58 KOG0144 RNA-binding protein CU 98.5 1.5E-07 3.2E-12 104.2 7.2 82 106-195 36-120 (510)
59 KOG0147 Transcriptional coacti 98.5 1.2E-07 2.6E-12 107.1 6.1 79 107-193 281-359 (549)
60 KOG4661 Hsp27-ERE-TATA-binding 98.4 3E-07 6.5E-12 104.2 6.7 79 104-190 405-483 (940)
61 KOG4208 Nucleolar RNA-binding 98.3 1.4E-06 3.1E-11 89.2 7.7 79 104-190 49-128 (214)
62 KOG0124 Polypyrimidine tract-b 98.3 6.3E-07 1.4E-11 97.8 4.8 75 105-187 114-188 (544)
63 KOG0146 RNA-binding protein ET 98.3 7.9E-07 1.7E-11 94.1 5.2 82 103-192 284-365 (371)
64 KOG0533 RRM motif-containing p 98.2 2.5E-06 5.4E-11 89.4 7.6 77 105-190 84-160 (243)
65 KOG0153 Predicted RNA-binding 98.2 2.4E-06 5.3E-11 92.8 7.7 73 106-192 230-303 (377)
66 KOG0109 RNA-binding protein LA 98.2 1.2E-06 2.5E-11 93.7 5.2 71 106-192 4-74 (346)
67 KOG0123 Polyadenylate-binding 98.2 3.1E-06 6.7E-11 93.0 8.6 74 107-191 79-152 (369)
68 KOG0415 Predicted peptidyl pro 98.2 3.4E-06 7.4E-11 92.0 8.7 89 95-191 229-318 (479)
69 KOG0131 Splicing factor 3b, su 98.2 2E-06 4.4E-11 87.0 5.0 88 95-192 89-177 (203)
70 KOG0109 RNA-binding protein LA 98.1 2.5E-06 5.4E-11 91.2 5.1 77 103-195 77-153 (346)
71 KOG0110 RNA-binding protein (R 98.1 1E-05 2.2E-10 94.1 9.1 87 101-192 512-598 (725)
72 KOG0123 Polyadenylate-binding 98.1 3.9E-06 8.4E-11 92.3 5.5 84 100-192 266-349 (369)
73 KOG1548 Transcription elongati 98.0 1.8E-05 3.9E-10 86.2 8.2 87 96-191 126-220 (382)
74 KOG0151 Predicted splicing reg 97.9 1.6E-05 3.4E-10 92.5 7.5 108 102-214 172-286 (877)
75 KOG0124 Polypyrimidine tract-b 97.9 1.9E-05 4.2E-10 86.5 6.9 80 104-191 210-289 (544)
76 KOG4205 RNA-binding protein mu 97.9 1E-05 2.3E-10 87.4 4.6 78 103-189 5-82 (311)
77 KOG1548 Transcription elongati 97.8 4.6E-05 9.9E-10 83.2 7.7 62 125-195 294-357 (382)
78 KOG4205 RNA-binding protein mu 97.7 3.9E-05 8.4E-10 83.1 5.4 85 104-197 97-181 (311)
79 KOG4660 Protein Mei2, essentia 97.7 2.5E-05 5.3E-10 89.0 3.7 88 91-192 63-150 (549)
80 KOG0110 RNA-binding protein (R 97.7 2.9E-05 6.2E-10 90.4 4.2 79 105-191 614-692 (725)
81 KOG0146 RNA-binding protein ET 97.7 6.3E-05 1.4E-09 80.1 6.3 81 104-193 19-102 (371)
82 KOG1995 Conserved Zn-finger pr 97.6 5.4E-05 1.2E-09 82.7 5.2 98 100-205 62-167 (351)
83 KOG0116 RasGAP SH3 binding pro 97.6 8E-05 1.7E-09 83.5 6.2 88 95-193 281-368 (419)
84 KOG0106 Alternative splicing f 97.5 6E-05 1.3E-09 78.1 3.7 71 106-192 3-73 (216)
85 KOG4209 Splicing factor RNPS1, 97.5 0.00016 3.4E-09 75.5 6.6 84 100-192 97-180 (231)
86 KOG1190 Polypyrimidine tract-b 97.5 0.00022 4.9E-09 79.3 8.0 103 104-233 297-399 (492)
87 KOG4212 RNA-binding protein hn 97.5 0.00025 5.5E-09 79.4 8.2 78 101-187 40-119 (608)
88 KOG0147 Transcriptional coacti 97.4 0.0002 4.3E-09 81.8 6.6 76 125-214 471-547 (549)
89 KOG4454 RNA binding protein (R 97.4 5.4E-05 1.2E-09 78.8 1.5 73 106-188 11-83 (267)
90 KOG2202 U2 snRNP splicing fact 97.4 9E-05 2E-09 78.2 3.0 82 126-214 88-175 (260)
91 KOG4212 RNA-binding protein hn 97.3 0.00033 7.2E-09 78.5 6.6 72 104-188 536-607 (608)
92 PF13920 zf-C3HC4_3: Zinc fing 97.3 8.1E-05 1.7E-09 59.6 1.3 47 5-61 1-48 (50)
93 PF11608 Limkain-b1: Limkain b 97.2 0.0016 3.5E-08 59.6 7.7 71 105-190 3-75 (90)
94 KOG1457 RNA binding protein (c 97.0 0.0022 4.8E-08 67.4 8.6 82 104-192 34-118 (284)
95 TIGR00570 cdk7 CDK-activating 97.0 0.0007 1.5E-08 73.5 4.8 55 6-66 3-59 (309)
96 PF13639 zf-RING_2: Ring finge 97.0 0.00018 3.8E-09 56.1 0.1 44 7-57 1-44 (44)
97 KOG1996 mRNA splicing factor [ 97.0 0.00072 1.5E-08 73.0 4.6 60 125-188 304-363 (378)
98 PLN02189 cellulose synthase 96.9 0.00042 9.2E-09 84.3 2.6 50 7-61 35-87 (1040)
99 KOG0120 Splicing factor U2AF, 96.9 0.002 4.4E-08 73.8 7.3 67 125-193 427-494 (500)
100 PF08777 RRM_3: RNA binding mo 96.8 0.0025 5.4E-08 59.2 6.2 59 105-177 2-60 (105)
101 cd00162 RING RING-finger (Real 96.8 0.0014 3.1E-08 48.6 3.3 44 8-59 1-44 (45)
102 PF05172 Nup35_RRM: Nup53/35/4 96.7 0.0017 3.8E-08 60.2 3.9 76 104-184 6-83 (100)
103 PLN03208 E3 ubiquitin-protein 96.7 0.0019 4E-08 66.3 4.4 60 4-67 16-85 (193)
104 PHA02929 N1R/p28-like protein; 96.6 0.002 4.3E-08 67.9 4.0 52 4-61 172-227 (238)
105 PLN02436 cellulose synthase A 96.5 0.0012 2.6E-08 80.8 2.4 50 7-61 37-89 (1094)
106 KOG0120 Splicing factor U2AF, 96.5 0.0021 4.5E-08 73.7 3.6 84 100-191 285-368 (500)
107 PF14605 Nup35_RRM_2: Nup53/35 96.4 0.0051 1.1E-07 50.8 4.7 52 105-171 2-53 (53)
108 PF04059 RRM_2: RNA recognitio 96.4 0.029 6.3E-07 52.1 9.8 82 104-192 1-87 (97)
109 KOG3152 TBP-binding protein, a 96.2 0.0018 4E-08 68.8 1.4 78 103-183 73-157 (278)
110 KOG4211 Splicing factor hnRNP- 96.2 0.031 6.7E-07 64.0 10.8 82 106-199 12-93 (510)
111 KOG1190 Polypyrimidine tract-b 96.1 0.0098 2.1E-07 66.8 6.5 71 107-189 153-225 (492)
112 KOG2314 Translation initiation 96.1 0.011 2.4E-07 68.4 6.6 77 105-187 59-139 (698)
113 KOG4210 Nuclear localization s 96.0 0.0037 8E-08 67.2 2.3 78 106-192 186-264 (285)
114 KOG1456 Heterogeneous nuclear 95.7 0.07 1.5E-06 59.8 10.5 77 103-191 286-362 (494)
115 KOG0226 RNA-binding proteins [ 95.6 0.011 2.3E-07 63.3 4.0 76 105-188 191-266 (290)
116 smart00504 Ubox Modified RING 95.6 0.014 3E-07 47.8 3.6 50 7-66 2-51 (63)
117 KOG2177 Predicted E3 ubiquitin 95.4 0.0077 1.7E-07 58.7 2.0 48 4-61 11-58 (386)
118 PF14634 zf-RING_5: zinc-RING 95.4 0.016 3.5E-07 45.7 3.4 44 8-58 1-44 (44)
119 KOG0106 Alternative splicing f 95.4 0.009 1.9E-07 62.4 2.4 75 96-186 89-165 (216)
120 PF13923 zf-C3HC4_2: Zinc fing 95.3 0.0092 2E-07 45.7 1.6 39 9-56 1-39 (39)
121 KOG0320 Predicted E3 ubiquitin 95.3 0.013 2.9E-07 59.7 3.0 52 6-65 131-182 (187)
122 PLN02248 cellulose synthase-li 95.2 0.02 4.4E-07 70.7 4.8 50 7-62 125-178 (1135)
123 PHA02926 zinc finger-like prot 95.0 0.026 5.6E-07 59.5 4.2 57 5-61 169-230 (242)
124 smart00184 RING Ring finger. E 94.9 0.031 6.8E-07 39.9 3.3 39 9-56 1-39 (39)
125 KOG1365 RNA-binding protein Fu 94.9 0.027 5.9E-07 63.0 4.3 75 104-187 280-357 (508)
126 TIGR00599 rad18 DNA repair pro 94.5 0.034 7.4E-07 62.6 4.0 52 4-65 24-75 (397)
127 KOG2416 Acinus (induces apopto 94.4 0.027 5.9E-07 65.7 3.0 74 104-191 444-521 (718)
128 PLN02195 cellulose synthase A 94.4 0.029 6.3E-07 68.7 3.3 57 1-62 1-60 (977)
129 PF14569 zf-UDP: Zinc-binding 94.1 0.045 9.8E-07 49.4 3.2 53 5-62 8-63 (80)
130 PF00097 zf-C3HC4: Zinc finger 94.0 0.027 5.8E-07 43.0 1.4 41 9-56 1-41 (41)
131 KOG4211 Splicing factor hnRNP- 93.9 0.13 2.8E-06 59.2 7.0 73 105-187 104-177 (510)
132 KOG4206 Spliceosomal protein s 93.9 0.16 3.5E-06 53.5 7.1 76 101-189 143-219 (221)
133 KOG1457 RNA binding protein (c 93.7 0.059 1.3E-06 57.1 3.6 64 104-179 210-273 (284)
134 PF08952 DUF1866: Domain of un 93.6 0.17 3.6E-06 50.4 6.3 54 125-192 54-107 (146)
135 KOG0129 Predicted RNA-binding 93.2 0.26 5.6E-06 57.0 7.9 79 105-190 260-341 (520)
136 KOG1456 Heterogeneous nuclear 92.8 0.91 2E-05 51.3 11.0 73 109-194 127-201 (494)
137 KOG0112 Large RNA-binding prot 92.8 0.12 2.6E-06 62.8 4.7 78 100-191 451-530 (975)
138 KOG4285 Mitotic phosphoprotein 92.7 0.19 4.1E-06 55.2 5.7 65 105-185 198-262 (350)
139 PF15227 zf-C3HC4_4: zinc fing 92.7 0.053 1.1E-06 42.9 1.2 42 9-56 1-42 (42)
140 KOG0129 Predicted RNA-binding 92.4 0.24 5.3E-06 57.2 6.3 69 97-173 363-432 (520)
141 KOG3002 Zn finger protein [Gen 91.9 0.11 2.4E-06 56.7 2.8 46 4-61 46-91 (299)
142 PF13445 zf-RING_UBOX: RING-ty 91.8 0.092 2E-06 42.2 1.5 43 9-54 1-43 (43)
143 PLN02638 cellulose synthase A 91.7 0.095 2.1E-06 65.0 2.2 50 7-61 18-70 (1079)
144 PF05290 Baculo_IE-1: Baculovi 91.6 0.19 4.1E-06 49.6 3.8 57 3-64 77-135 (140)
145 PLN02915 cellulose synthase A 91.6 0.11 2.4E-06 64.2 2.7 50 7-61 16-68 (1044)
146 PF04641 Rtf2: Rtf2 RING-finge 91.5 0.2 4.4E-06 53.0 4.1 64 4-74 111-174 (260)
147 COG5236 Uncharacterized conser 91.4 0.12 2.7E-06 57.4 2.6 55 3-65 58-112 (493)
148 KOG2164 Predicted E3 ubiquitin 91.3 0.13 2.9E-06 59.3 2.8 49 6-61 186-236 (513)
149 KOG0317 Predicted E3 ubiquitin 91.0 0.19 4.2E-06 54.6 3.5 55 3-67 236-290 (293)
150 KOG4307 RNA binding protein RB 91.0 0.51 1.1E-05 56.5 7.1 74 106-188 869-943 (944)
151 PF10309 DUF2414: Protein of u 90.9 0.74 1.6E-05 40.0 6.2 57 102-174 3-62 (62)
152 KOG4676 Splicing factor, argin 89.9 0.29 6.3E-06 55.3 3.8 76 106-187 9-84 (479)
153 PLN02400 cellulose synthase 89.9 0.15 3.2E-06 63.4 1.6 49 8-61 38-89 (1085)
154 KOG0115 RNA-binding protein p5 89.4 0.51 1.1E-05 50.9 5.0 68 99-175 26-93 (275)
155 KOG1855 Predicted RNA-binding 88.8 0.37 8E-06 54.9 3.6 82 102-187 229-319 (484)
156 PF04847 Calcipressin: Calcipr 88.4 0.82 1.8E-05 46.9 5.4 57 125-192 13-71 (184)
157 KOG2193 IGF-II mRNA-binding pr 87.4 0.65 1.4E-05 53.1 4.3 76 105-194 2-78 (584)
158 KOG1365 RNA-binding protein Fu 87.1 1.5 3.3E-05 49.7 6.9 58 107-173 164-225 (508)
159 KOG4172 Predicted E3 ubiquitin 87.1 0.2 4.3E-06 43.0 0.2 47 6-61 7-54 (62)
160 KOG2135 Proteins containing th 86.9 0.31 6.7E-06 56.1 1.5 76 101-190 369-444 (526)
161 KOG0128 RNA-binding protein SA 86.8 0.27 5.8E-06 59.6 1.1 77 104-189 736-812 (881)
162 PF08675 RNA_bind: RNA binding 86.7 1.9 4.2E-05 39.9 6.2 56 104-175 8-63 (87)
163 PF12861 zf-Apc11: Anaphase-pr 85.8 0.95 2.1E-05 41.7 3.8 54 5-61 20-82 (85)
164 KOG4265 Predicted E3 ubiquitin 85.8 0.4 8.6E-06 53.4 1.7 49 4-63 288-338 (349)
165 COG5432 RAD18 RING-finger-cont 85.0 0.42 9.1E-06 52.4 1.4 46 7-64 26-73 (391)
166 COG5243 HRD1 HRD ubiquitin lig 84.6 0.66 1.4E-05 52.3 2.7 50 5-60 286-344 (491)
167 COG5574 PEX10 RING-finger-cont 84.6 0.68 1.5E-05 50.1 2.7 50 4-61 213-262 (271)
168 KOG0802 E3 ubiquitin ligase [P 84.4 0.56 1.2E-05 54.5 2.1 55 4-65 289-345 (543)
169 PF12678 zf-rbx1: RING-H2 zinc 84.3 0.81 1.8E-05 40.0 2.6 47 5-57 18-73 (73)
170 KOG3800 Predicted E3 ubiquitin 83.9 1.1 2.4E-05 49.0 4.0 54 8-66 2-56 (300)
171 PF10650 zf-C3H1: Putative zin 82.6 0.7 1.5E-05 33.3 1.2 20 193-212 2-21 (23)
172 KOG0311 Predicted E3 ubiquitin 81.9 0.24 5.2E-06 55.3 -2.0 49 5-61 42-90 (381)
173 KOG2857 Predicted MYND Zn-fing 81.8 0.61 1.3E-05 46.6 0.9 27 26-61 2-28 (157)
174 KOG4307 RNA binding protein RB 81.3 1 2.2E-05 54.1 2.7 75 104-187 434-509 (944)
175 KOG0128 RNA-binding protein SA 81.2 0.2 4.4E-06 60.6 -3.0 69 104-180 667-735 (881)
176 PF03467 Smg4_UPF3: Smg-4/UPF3 80.5 2.2 4.7E-05 43.2 4.4 71 103-179 6-80 (176)
177 PHA02825 LAP/PHD finger-like p 80.1 1.4 3E-05 44.8 2.8 49 4-62 6-60 (162)
178 PF04564 U-box: U-box domain; 79.9 1.4 3E-05 38.3 2.4 52 6-66 4-55 (73)
179 PF11767 SET_assoc: Histone ly 79.4 2.8 6.1E-05 36.8 4.1 29 157-185 36-64 (66)
180 KOG0287 Postreplication repair 79.2 0.7 1.5E-05 51.6 0.5 50 6-65 23-72 (442)
181 KOG0112 Large RNA-binding prot 78.8 0.54 1.2E-05 57.5 -0.6 78 105-191 373-450 (975)
182 KOG2591 c-Mpl binding protein, 78.5 3.2 7E-05 49.0 5.4 86 96-199 166-256 (684)
183 KOG2923 Uncharacterized conser 74.5 1.3 2.8E-05 39.0 0.7 32 21-57 20-51 (67)
184 PF07191 zinc-ribbons_6: zinc- 73.3 0.47 1E-05 42.2 -2.3 41 6-61 1-41 (70)
185 PF08274 PhnA_Zn_Ribbon: PhnA 73.1 1.2 2.6E-05 33.8 0.1 26 7-32 3-29 (30)
186 KOG0297 TNF receptor-associate 72.7 2.5 5.4E-05 47.7 2.6 53 4-65 19-71 (391)
187 COG5216 Uncharacterized conser 72.7 1.2 2.5E-05 38.9 0.0 37 17-58 15-52 (67)
188 KOG1941 Acetylcholine receptor 70.4 2.1 4.7E-05 48.7 1.4 49 6-58 365-413 (518)
189 COG5220 TFB3 Cdk activating ki 70.4 1.2 2.6E-05 47.9 -0.5 50 6-60 10-63 (314)
190 KOG0823 Predicted E3 ubiquitin 67.3 3.9 8.6E-05 43.6 2.5 58 3-67 44-101 (230)
191 PF15023 DUF4523: Protein of u 67.2 22 0.00047 36.3 7.4 70 106-188 88-158 (166)
192 COG5222 Uncharacterized conser 66.6 7.6 0.00016 43.2 4.5 68 7-85 275-346 (427)
193 KOG1812 Predicted E3 ubiquitin 65.3 4.1 8.9E-05 46.0 2.3 60 6-65 146-207 (384)
194 KOG2193 IGF-II mRNA-binding pr 64.6 0.39 8.5E-06 54.7 -5.7 70 107-188 83-153 (584)
195 PF14608 zf-CCCH_2: Zinc finge 63.3 4.6 0.0001 27.5 1.4 16 194-212 2-18 (19)
196 KOG4849 mRNA cleavage factor I 63.2 6.5 0.00014 44.4 3.3 78 105-188 81-159 (498)
197 KOG4185 Predicted E3 ubiquitin 61.5 6 0.00013 42.1 2.6 49 7-60 4-54 (296)
198 PF11793 FANCL_C: FANCL C-term 61.3 3.9 8.5E-05 35.7 1.0 55 6-61 2-66 (70)
199 KOG0105 Alternative splicing f 58.3 24 0.00052 37.3 6.1 61 104-179 115-175 (241)
200 KOG4574 RNA-binding protein (c 57.9 6.8 0.00015 48.3 2.5 83 95-192 290-374 (1007)
201 smart00356 ZnF_C3H1 zinc finge 56.4 9.4 0.0002 26.5 2.1 23 191-214 4-27 (27)
202 KOG2879 Predicted E3 ubiquitin 55.1 9.9 0.00021 41.8 2.9 50 4-60 237-286 (298)
203 PF07576 BRAP2: BRCA1-associat 54.2 72 0.0016 30.6 8.2 66 105-180 13-80 (110)
204 COG5183 SSM4 Protein involved 54.1 9.2 0.0002 47.1 2.7 55 4-65 10-70 (1175)
205 COG5219 Uncharacterized conser 54.0 4.7 0.0001 50.3 0.3 50 4-60 1467-1522(1525)
206 KOG0804 Cytoplasmic Zn-finger 53.8 7.3 0.00016 45.2 1.8 25 5-29 174-198 (493)
207 KOG0824 Predicted E3 ubiquitin 53.8 10 0.00022 42.2 2.7 52 5-65 6-57 (324)
208 smart00744 RINGv The RING-vari 52.4 16 0.00034 30.1 3.0 46 8-57 1-49 (49)
209 KOG4210 Nuclear localization s 51.1 8.7 0.00019 41.9 1.8 109 105-227 89-203 (285)
210 KOG1815 Predicted E3 ubiquitin 50.0 25 0.00055 40.2 5.3 67 3-72 67-137 (444)
211 KOG0978 E3 ubiquitin ligase in 49.5 11 0.00023 45.9 2.4 51 7-66 644-694 (698)
212 KOG1785 Tyrosine kinase negati 48.0 9.6 0.00021 43.8 1.5 46 7-60 370-415 (563)
213 TIGR00143 hypF [NiFe] hydrogen 46.9 2.9 6.2E-05 50.7 -2.9 53 6-63 68-131 (711)
214 KOG3702 Nuclear polyadenylated 44.7 22 0.00047 43.1 3.8 97 101-214 509-605 (681)
215 KOG3161 Predicted E3 ubiquitin 44.6 9.1 0.0002 46.2 0.8 48 7-65 12-59 (861)
216 PF02318 FYVE_2: FYVE-type zin 43.8 11 0.00024 35.7 1.1 49 5-58 53-102 (118)
217 KOG0804 Cytoplasmic Zn-finger 43.7 63 0.0014 38.0 7.0 67 104-180 74-141 (493)
218 KOG0825 PHD Zn-finger protein 43.7 6.4 0.00014 48.3 -0.6 55 1-62 118-172 (1134)
219 PHA02862 5L protein; Provision 43.4 19 0.00042 36.5 2.7 45 7-61 3-53 (156)
220 KOG4692 Predicted E3 ubiquitin 43.0 17 0.00038 41.3 2.6 49 2-60 418-466 (489)
221 KOG4159 Predicted E3 ubiquitin 40.2 18 0.00038 41.6 2.1 48 5-62 83-130 (398)
222 KOG3039 Uncharacterized conser 40.2 20 0.00043 39.2 2.4 52 7-68 222-277 (303)
223 PF06827 zf-FPG_IleRS: Zinc fi 40.0 3.8 8.3E-05 30.1 -2.1 28 31-58 2-29 (30)
224 PF12906 RINGv: RING-variant d 39.9 19 0.00041 29.4 1.7 41 9-56 1-47 (47)
225 PF12773 DZR: Double zinc ribb 39.1 26 0.00055 28.1 2.3 29 31-62 13-41 (50)
226 PF14447 Prok-RING_4: Prokaryo 38.9 16 0.00034 31.6 1.1 33 25-65 22-54 (55)
227 KOG0826 Predicted E3 ubiquitin 38.8 15 0.00033 41.2 1.3 42 5-58 299-343 (357)
228 KOG4628 Predicted E3 ubiquitin 38.7 22 0.00048 40.2 2.6 47 8-61 231-278 (348)
229 KOG1729 FYVE finger containing 38.7 6.9 0.00015 43.0 -1.3 60 2-62 164-226 (288)
230 PF00642 zf-CCCH: Zinc finger 38.4 11 0.00023 27.4 0.0 23 191-213 3-26 (27)
231 PF01485 IBR: IBR domain; Int 37.0 16 0.00036 29.6 0.9 34 5-38 17-56 (64)
232 COG1198 PriA Primosomal protei 33.9 24 0.00053 43.3 2.1 67 7-103 445-511 (730)
233 TIGR00416 sms DNA repair prote 32.3 20 0.00044 41.2 1.0 24 21-58 5-29 (454)
234 PF11781 RRN7: RNA polymerase 32.1 22 0.00048 27.9 0.9 25 8-32 10-35 (36)
235 KOG1039 Predicted E3 ubiquitin 30.9 39 0.00084 38.3 2.8 55 4-60 159-220 (344)
236 KOG4213 RNA-binding protein La 30.2 50 0.0011 34.8 3.3 62 101-174 108-170 (205)
237 KOG0828 Predicted E3 ubiquitin 29.9 40 0.00087 40.0 2.8 14 6-19 571-584 (636)
238 PRK11595 DNA utilization prote 29.7 42 0.0009 35.0 2.7 40 7-61 6-45 (227)
239 PF03880 DbpA: DbpA RNA bindin 28.9 1.1E+02 0.0023 26.7 4.7 59 114-189 11-74 (74)
240 KOG1493 Anaphase-promoting com 28.8 52 0.0011 30.5 2.8 54 6-60 20-80 (84)
241 PRK04023 DNA polymerase II lar 28.3 36 0.00077 43.3 2.2 46 5-63 625-676 (1121)
242 PF12861 zf-Apc11: Anaphase-pr 28.0 39 0.00084 31.5 1.9 28 31-67 22-49 (85)
243 PRK11823 DNA repair protein Ra 27.8 29 0.00064 39.8 1.3 24 21-58 5-29 (446)
244 PF05605 zf-Di19: Drought indu 27.2 31 0.00068 28.4 1.0 39 6-59 2-40 (54)
245 smart00064 FYVE Protein presen 26.7 47 0.001 28.0 2.0 41 1-41 5-45 (68)
246 PF10571 UPF0547: Uncharacteri 26.3 42 0.00091 24.8 1.4 21 8-31 2-23 (26)
247 KOG1492 C3H1-type Zn-finger pr 26.3 25 0.00055 37.8 0.4 26 193-219 263-288 (377)
248 COG0724 RNA-binding proteins ( 25.6 73 0.0016 30.6 3.4 77 95-179 216-292 (306)
249 KOG1001 Helicase-like transcri 25.4 25 0.00054 42.8 0.2 50 7-65 455-504 (674)
250 KOG1842 FYVE finger-containing 24.3 30 0.00064 40.5 0.6 39 2-41 176-215 (505)
251 KOG2891 Surface glycoprotein [ 24.2 24 0.00053 39.1 -0.1 91 103-195 148-271 (445)
252 KOG1812 Predicted E3 ubiquitin 23.9 39 0.00085 38.4 1.4 35 7-41 307-342 (384)
253 KOG2318 Uncharacterized conser 23.0 3.1E+02 0.0068 33.5 8.3 79 104-182 174-296 (650)
254 PRK03681 hypA hydrogenase nick 22.3 41 0.00089 32.1 1.0 20 8-27 72-91 (114)
255 cd01121 Sms Sms (bacterial rad 22.0 41 0.00089 38.0 1.1 10 49-58 13-22 (372)
256 smart00647 IBR In Between Ring 21.0 48 0.001 27.0 1.0 33 6-38 18-56 (64)
257 PF14835 zf-RING_6: zf-RING of 20.8 60 0.0013 29.0 1.6 46 6-62 7-52 (65)
258 PRK14873 primosome assembly pr 20.6 1E+02 0.0022 37.7 3.9 52 7-76 393-444 (665)
259 PF12677 DUF3797: Domain of un 20.4 41 0.0009 28.5 0.5 26 7-32 14-48 (49)
No 1
>COG5175 MOT2 Transcriptional repressor [Transcription]
Probab=100.00 E-value=9.1e-77 Score=621.91 Aligned_cols=223 Identities=47% Similarity=0.970 Sum_probs=200.0
Q ss_pred CcccCCCCCCcccCCCcCCCCccccCCCchhhhhhHhHhHhhhhhccccCCCCCCCCCCccccccccccChhH--H----
Q 003574 2 SDEGEKTCPLCAEEMDLTDQQLKPCKCGYEICVWCWHHIMDMAEKEETEGRCPACRSPYDKEKIVGMAAKCES--M---- 75 (810)
Q Consensus 2 sDd~d~~CPLC~EelD~tD~~F~PC~CGYQIC~fC~~rI~~~a~k~~~~grCPACRr~Yde~~i~~~~~~~e~--~---- 75 (810)
|+|+|..||||||+||++|++|+||+||||||+||||+|+ .+++||||||||.|+++.+.|.++++|| +
T Consensus 10 sedeed~cplcie~mditdknf~pc~cgy~ic~fc~~~ir-----q~lngrcpacrr~y~denv~~~~~s~ee~kmel~r 84 (480)
T COG5175 10 SEDEEDYCPLCIEPMDITDKNFFPCPCGYQICQFCYNNIR-----QNLNGRCPACRRKYDDENVRYVTLSPEELKMELAR 84 (480)
T ss_pred cccccccCcccccccccccCCcccCCcccHHHHHHHHHHH-----hhccCCChHhhhhccccceeEEecCHHHHHHHHHh
Confidence 5666777999999999999999999999999999999996 4799999999999999999999999998 2
Q ss_pred --HHHHHhhhccCCCchhhhhccccccccccCeEEEeCCCCCCChhH---HHHHHHhhccCcceeEEEEeecCCCccccc
Q 003574 76 --ERKMKSQKSKTKSSEGKKQQLSSVRVIQRNLVYIVGLPLNLGDED---LLQRREYFGQYGKVLKVSMSRTAAGVIQQF 150 (810)
Q Consensus 76 --~kkqK~qk~K~k~~e~RK~~LanvRVIQkNLVYV~GLP~~iaEED---LLr~~EyFGQYGkI~KIvInrdk~g~~~q~ 150 (810)
|+|+++...|+.+-.+|| ||+++||||||||||+||++.+++|+ +|++.|||||||+|+||+|++...... .
T Consensus 85 k~erk~rekerke~e~~nrk-hlsniRVvQKNLvYVigi~pkva~Ee~~~vLk~~eyFGQyGkI~KIvvNkkt~s~n--s 161 (480)
T COG5175 85 KEERKMREKERKEAEGQNRK-HLSNIRVVQKNLVYVIGIPPKVADEEVAPVLKRHEYFGQYGKIKKIVVNKKTSSLN--S 161 (480)
T ss_pred hhhhhccHHHHhhhhccccc-ccccceeeecceeEEecCCCCCCcccccccccchhhhhhccceeEEEecccccccc--c
Confidence 233333334444567899 99999999999999999999999999 899999999999999999998764331 1
Q ss_pred CCCceEEEEEeCCHHHHHHHHHHhCCCccCCcEEEEeecCCCCcccccCCCCCCCCCCcccccCCCCCCCccHHHHHhhh
Q 003574 151 PNNTCSVYITYSKEEEAVRCIQSVHGFVLEGKSLKACFGTTKYCHAWLRNVPCTNPDCLYLHEVGSQEDSFTKDEIISAY 230 (810)
Q Consensus 151 ~~~~gsAYVTFs~~EDA~rAI~aLDG~~LDGR~LRASfGTTKYCs~FLRg~~C~N~dC~YLHE~g~~~DsfTKeEm~s~~ 230 (810)
....+++||||.++|||.+||+++||..+|||.|||+|||||||++||||++|.||+||||||+|++.|+|||+||....
T Consensus 162 t~~h~gvYITy~~kedAarcIa~vDgs~~DGr~lkatYGTTKYCtsYLRn~~CpNp~CMyLHEpg~e~Ds~tK~el~n~q 241 (480)
T COG5175 162 TASHAGVYITYSTKEDAARCIAEVDGSLLDGRVLKATYGTTKYCTSYLRNAVCPNPDCMYLHEPGPEKDSLTKDELCNSQ 241 (480)
T ss_pred ccccceEEEEecchHHHHHHHHHhccccccCceEeeecCchHHHHHHHcCCCCCCCCeeeecCCCcccccccHHHHhhhh
Confidence 23357899999999999999999999999999999999999999999999999999999999999999999999999876
Q ss_pred cc
Q 003574 231 TR 232 (810)
Q Consensus 231 ~~ 232 (810)
+.
T Consensus 242 h~ 243 (480)
T COG5175 242 HK 243 (480)
T ss_pred hh
Confidence 65
No 2
>KOG2068 consensus MOT2 transcription factor [Transcription]
Probab=100.00 E-value=1.1e-57 Score=479.41 Aligned_cols=299 Identities=43% Similarity=0.685 Sum_probs=251.6
Q ss_pred CchhhhhhHhHhHhhhhhccccCCCCCCCCCCccccccccccChhHHH-----HHHHhhhccCCCchhhhhccccccccc
Q 003574 29 GYEICVWCWHHIMDMAEKEETEGRCPACRSPYDKEKIVGMAAKCESME-----RKMKSQKSKTKSSEGKKQQLSSVRVIQ 103 (810)
Q Consensus 29 GYQIC~fC~~rI~~~a~k~~~~grCPACRr~Yde~~i~~~~~~~e~~~-----kkqK~qk~K~k~~e~RK~~LanvRVIQ 103 (810)
|||||.||||||++++++ +|||||||++|++++|+++...++++. +++|+++.|.+...+|+ ||+++||||
T Consensus 1 ~yqIc~~cwh~i~~~~~~---~grcpncr~ky~e~ki~~r~~~~~~l~~~~n~~kk~e~e~k~~~~s~r~-~ls~~rvVq 76 (327)
T KOG2068|consen 1 GYQICDSCWHHIATSAEK---KGRCPNCRTKYKEEKIVLRRVQWESLVAEKNKEKKKEQEIKRKLSSNRK-HLSGVRVVQ 76 (327)
T ss_pred CceeeHHHHhcccccccc---ccCCccccCccchhhhccccccHHHHHHhhhhhhhhHHHHhhhhhhccc-ccccchhhh
Confidence 899999999999987754 799999999999999999999998843 34566777778889999 899999999
Q ss_pred cCeEEEeCCCCCCChhHHHHHHHhhccCcceeEEEEeecCCCcccccCCCceEEEEEeCCHHHHHHHHHHhCCCccCCcE
Q 003574 104 RNLVYIVGLPLNLGDEDLLQRREYFGQYGKVLKVSMSRTAAGVIQQFPNNTCSVYITYSKEEEAVRCIQSVHGFVLEGKS 183 (810)
Q Consensus 104 kNLVYV~GLP~~iaEEDLLr~~EyFGQYGkI~KIvInrdk~g~~~q~~~~~gsAYVTFs~~EDA~rAI~aLDG~~LDGR~ 183 (810)
||+|||+||+..+++|++|++.+||||||+|.||++++++... .......++||||.+.|||.+||+.++|+.++||.
T Consensus 77 knlvyvvgl~~~~ade~~l~~~eyfgqygki~ki~~~~~~S~~--s~~~~~~s~yITy~~~eda~rci~~v~g~~~dg~~ 154 (327)
T KOG2068|consen 77 KNLVYVVGLPLDLADESVLERTEYFGQYGKINKIVKNKDPSSS--SSSGGTCSVYITYEEEEDADRCIDDVDGFVDDGRA 154 (327)
T ss_pred hhhhhhhCCCccccchhhhhCcccccccccceEEeecCCcccc--cCCCCCCcccccccchHhhhhHHHHhhhHHhhhhh
Confidence 9999999999999999999999999999999999999977421 22345678999999999999999999999999999
Q ss_pred EEEeecCCCCcccccCCCCCCCCCCcccccCCCCCCCccHHHHHhhhccccccccccCCcccccccCCCCCCCCCccccc
Q 003574 184 LKACFGTTKYCHAWLRNVPCTNPDCLYLHEVGSQEDSFTKDEIISAYTRSRVQQITGTTNNLQRRSGNVLPPPFDDYCHI 263 (810)
Q Consensus 184 LRASfGTTKYCs~FLRg~~C~N~dC~YLHE~g~~~DsfTKeEm~s~~~~~r~~~~~g~~~~~qr~sg~~lPpp~~~~~~~ 263 (810)
|+|+|||||||++|||+.+|.|++||||||+|+++|+|||+||..++++. ++.+++.+.++|..+..+|+|++-+...
T Consensus 155 lka~~gttkycs~~l~~~~c~~~~cmylhe~~~~~Ds~~k~e~~~~~~~~--~~~~~~~n~~~~~~~~~~p~~l~~~~~~ 232 (327)
T KOG2068|consen 155 LKASLGTTKYCSFYLRNDICQNPDCMYLHEIGDQEDSFTKDEMKSAKHRE--SSRKQTSNIARRSDDKLRPQPLPNLEKQ 232 (327)
T ss_pred hHHhhCCCcchhHHhhhhcccCccccccccccccccccchHHHHHHhhhh--hcccccccceeccCcccCCCcccccccc
Confidence 99999999999999999999999999999999999999999999999984 6777888899999999999999877654
Q ss_pred CccccCCCccccCCCCccccCCCCCCCCC---CCCCCCCCccccccccccCCCC-cccc-cCCCCCCCCCCCCcCCcccc
Q 003574 264 NSVSTAKPSVKNAANNTASISKDPIPNGS---SARSVALPAAASWGMRASNQQS-VATS-ACSNGPSKQRPDTVGGALAF 338 (810)
Q Consensus 264 ~~~~s~~p~~k~~~~n~~~~~r~~~p~~s---~~~~~ALP~sAsW~~r~s~~~~-~atg-~~~~~lsk~Kpds~~~tla~ 338 (810)
.+ .|..+..-+..++++...||-.+ ..++.+||+.++|++ ++. .+|. .+.+...-.+-....++.+|
T Consensus 233 --~s--~p~~~~~~~~~~~v~~s~p~~~~~~~~~d~~~lP~~~~~~~----~l~~~~t~~~~~~~~~~~rk~~~~~t~~s 304 (327)
T KOG2068|consen 233 --RS--APDAQLDFSSVTSVPPSCPICYEDLDLTDSNFLPCPCGFRL----CLFCHKTISDGDGRCPGCRKPYERNTKKS 304 (327)
T ss_pred --cC--CcccccCCccccccCCCCCCCCCcccccccccccccccccc----hhhhhhcccccCCCCCccCCccccCcccc
Confidence 22 66665554555566666666665 679999999999994 442 2443 33333344445566777777
Q ss_pred ccccc
Q 003574 339 SSAVA 343 (810)
Q Consensus 339 Ss~V~ 343 (810)
++.+-
T Consensus 305 ~~~~~ 309 (327)
T KOG2068|consen 305 ETSVQ 309 (327)
T ss_pred ccccc
Confidence 77776
No 3
>PF14570 zf-RING_4: RING/Ubox like zinc-binding domain; PDB: 1E4U_A 1UR6_B.
Probab=99.83 E-value=1.7e-21 Score=157.09 Aligned_cols=48 Identities=54% Similarity=1.475 Sum_probs=30.3
Q ss_pred CCCcccCCCcCCCCccccCCCchhhhhhHhHhHhhhhhccccCCCCCCCCCCc
Q 003574 9 CPLCAEEMDLTDQQLKPCKCGYEICVWCWHHIMDMAEKEETEGRCPACRSPYD 61 (810)
Q Consensus 9 CPLC~EelD~tD~~F~PC~CGYQIC~fC~~rI~~~a~k~~~~grCPACRr~Yd 61 (810)
||||+|+||++|+.|+||+||||||+|||++|++ +++|+||+||++|+
T Consensus 1 cp~C~e~~d~~d~~~~PC~Cgf~IC~~C~~~i~~-----~~~g~CPgCr~~Y~ 48 (48)
T PF14570_consen 1 CPLCDEELDETDKDFYPCECGFQICRFCYHDILE-----NEGGRCPGCREPYK 48 (48)
T ss_dssp -TTTS-B--CCCTT--SSTTS----HHHHHHHTT-----SS-SB-TTT--B--
T ss_pred CCCcccccccCCCccccCcCCCcHHHHHHHHHHh-----ccCCCCCCCCCCCC
Confidence 8999999999999999999999999999999973 57999999999995
No 4
>PLN03134 glycine-rich RNA-binding protein 4; Provisional
Probab=99.51 E-value=9e-14 Score=133.06 Aligned_cols=89 Identities=20% Similarity=0.394 Sum_probs=77.6
Q ss_pred ccccccccccCeEEEeCCCCCCChhHHHHHHHhhccCcceeEEEEeecCCCcccccCCCceEEEEEeCCHHHHHHHHHHh
Q 003574 95 QLSSVRVIQRNLVYIVGLPLNLGDEDLLQRREYFGQYGKVLKVSMSRTAAGVIQQFPNNTCSVYITYSKEEEAVRCIQSV 174 (810)
Q Consensus 95 ~LanvRVIQkNLVYV~GLP~~iaEEDLLr~~EyFGQYGkI~KIvInrdk~g~~~q~~~~~gsAYVTFs~~EDA~rAI~aL 174 (810)
.+..+|... +.|||+|||+.+++++| +++|.+||+|..|.|.++..+. ..+++|||+|.+.++|++||+.|
T Consensus 26 ~~~~~~~~~-~~lfVgnL~~~~te~~L---~~~F~~~G~I~~v~i~~d~~tg-----~~kGfaFV~F~~~e~A~~Al~~l 96 (144)
T PLN03134 26 MLGSLRLMS-TKLFIGGLSWGTDDASL---RDAFAHFGDVVDAKVIVDRETG-----RSRGFGFVNFNDEGAATAAISEM 96 (144)
T ss_pred ccccccCCC-CEEEEeCCCCCCCHHHH---HHHHhcCCCeEEEEEEecCCCC-----CcceEEEEEECCHHHHHHHHHHc
Confidence 444445544 46999999999999999 8999999999999999887654 35778999999999999999999
Q ss_pred CCCccCCcEEEEeecCCC
Q 003574 175 HGFVLEGKSLKACFGTTK 192 (810)
Q Consensus 175 DG~~LDGR~LRASfGTTK 192 (810)
||..|+|+.|+|.+++.+
T Consensus 97 ng~~i~Gr~l~V~~a~~~ 114 (144)
T PLN03134 97 DGKELNGRHIRVNPANDR 114 (144)
T ss_pred CCCEECCEEEEEEeCCcC
Confidence 999999999999998765
No 5
>TIGR01661 ELAV_HUD_SF ELAV/HuD family splicing factor. These proteins contain 3 RNA-recognition motifs (rrm: pfam00076).
Probab=99.50 E-value=8.3e-14 Score=145.35 Aligned_cols=79 Identities=23% Similarity=0.420 Sum_probs=73.4
Q ss_pred eEEEeCCCCCCChhHHHHHHHhhccCcceeEEEEeecCCCcccccCCCceEEEEEeCCHHHHHHHHHHhCCCccCCcEEE
Q 003574 106 LVYIVGLPLNLGDEDLLQRREYFGQYGKVLKVSMSRTAAGVIQQFPNNTCSVYITYSKEEEAVRCIQSVHGFVLEGKSLK 185 (810)
Q Consensus 106 LVYV~GLP~~iaEEDLLr~~EyFGQYGkI~KIvInrdk~g~~~q~~~~~gsAYVTFs~~EDA~rAI~aLDG~~LDGR~LR 185 (810)
.|||+|||+.+++++| +++|++||.|..|.|.++..++ ..+|+|||+|.+.++|.+||++|||..|+||.|+
T Consensus 271 ~lfV~NL~~~~~e~~L---~~~F~~fG~v~~v~i~~d~~t~-----~skG~aFV~F~~~~~A~~Ai~~lnG~~~~gr~i~ 342 (352)
T TIGR01661 271 CIFVYNLSPDTDETVL---WQLFGPFGAVQNVKIIRDLTTN-----QCKGYGFVSMTNYDEAAMAILSLNGYTLGNRVLQ 342 (352)
T ss_pred EEEEeCCCCCCCHHHH---HHHHHhCCCeEEEEEeEcCCCC-----CccceEEEEECCHHHHHHHHHHhCCCEECCeEEE
Confidence 5999999999999898 8999999999999999987543 3578899999999999999999999999999999
Q ss_pred EeecCCC
Q 003574 186 ACFGTTK 192 (810)
Q Consensus 186 ASfGTTK 192 (810)
|+|.+.|
T Consensus 343 V~~~~~~ 349 (352)
T TIGR01661 343 VSFKTNK 349 (352)
T ss_pred EEEccCC
Confidence 9999987
No 6
>PF00076 RRM_1: RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain); InterPro: IPR000504 Many eukaryotic proteins containing one or more copies of a putative RNA-binding domain of about 90 amino acids are known to bind single-stranded RNAs [, , ]. The largest group of single strand RNA-binding proteins is the eukaryotic RNA recognition motif (RRM) family that contains an eight amino acid RNP-1 consensus sequence [, ]. RRM proteins have a variety of RNA binding preferences and functions, and include heterogeneous nuclear ribonucleoproteins (hnRNPs), proteins implicated in regulation of alternative splicing (SR, U2AF, Sxl), protein components of small nuclear ribonucleoproteins (U1 and U2 snRNPs), and proteins that regulate RNA stability and translation (PABP, La, Hu) [, , ]. The RRM in heterodimeric splicing factor U2 snRNP auxiliary factor (U2AF) appears to have two RRM-like domains with specialised features for protein recognition []. The motif also appears in a few single stranded DNA binding proteins. The typical RRM consists of four anti-parallel beta-strands and two alpha-helices arranged in a beta-alpha-beta-beta-alpha-beta fold with side chains that stack with RNA bases. Specificity of RNA binding is determined by multiple contacts with surrounding amino acids. A third helix is present during RNA binding in some cases []. The RRM is reviewed in a number of publications [, , ].; GO: 0003676 nucleic acid binding; PDB: 2RNE_A 2DGO_A 2DO4_A 1YTY_B 2VOO_B 2VOP_A 2VON_B 1ZH5_B 2VOD_A 1S79_A ....
Probab=99.50 E-value=8.8e-14 Score=111.97 Aligned_cols=70 Identities=24% Similarity=0.683 Sum_probs=63.9
Q ss_pred EEEeCCCCCCChhHHHHHHHhhccCcceeEEEEeecCCCcccccCCCceEEEEEeCCHHHHHHHHHHhCCCccCCcEEE
Q 003574 107 VYIVGLPLNLGDEDLLQRREYFGQYGKVLKVSMSRTAAGVIQQFPNNTCSVYITYSKEEEAVRCIQSVHGFVLEGKSLK 185 (810)
Q Consensus 107 VYV~GLP~~iaEEDLLr~~EyFGQYGkI~KIvInrdk~g~~~q~~~~~gsAYVTFs~~EDA~rAI~aLDG~~LDGR~LR 185 (810)
|||+|||+.+++++| +++|++||+|..+.|..+..+ ...+.|||+|.+.++|.+|++.+||..++|+.||
T Consensus 1 l~v~nlp~~~t~~~l---~~~f~~~g~i~~~~~~~~~~~------~~~~~a~V~F~~~~~a~~a~~~l~g~~~~~~~ir 70 (70)
T PF00076_consen 1 LYVGNLPPDVTEEEL---RDFFSQFGKIESIKVMRNSSG------KSKGYAFVEFESEEDAEKALEELNGKKINGRKIR 70 (70)
T ss_dssp EEEESETTTSSHHHH---HHHHHTTSTEEEEEEEEETTS------SEEEEEEEEESSHHHHHHHHHHHTTEEETTEEEE
T ss_pred cEEcCCCCcCCHHHH---HHHHHHhhhcccccccccccc------cccceEEEEEcCHHHHHHHHHHcCCCEECccCcC
Confidence 799999999999999 899999999999999887222 3467899999999999999999999999999997
No 7
>TIGR01661 ELAV_HUD_SF ELAV/HuD family splicing factor. These proteins contain 3 RNA-recognition motifs (rrm: pfam00076).
Probab=99.43 E-value=5.1e-13 Score=139.48 Aligned_cols=110 Identities=18% Similarity=0.379 Sum_probs=87.1
Q ss_pred cCeEEEeCCCCCCChhHHHHHHHhhccCcceeEEEEeecCCCcccccCCCceEEEEEeCCHHHHHHHHHHhCCCccCCcE
Q 003574 104 RNLVYIVGLPLNLGDEDLLQRREYFGQYGKVLKVSMSRTAAGVIQQFPNNTCSVYITYSKEEEAVRCIQSVHGFVLEGKS 183 (810)
Q Consensus 104 kNLVYV~GLP~~iaEEDLLr~~EyFGQYGkI~KIvInrdk~g~~~q~~~~~gsAYVTFs~~EDA~rAI~aLDG~~LDGR~ 183 (810)
++.|||+|||..+++++| +++|.+||+|..|.|.+++.++ ..+|+|||+|.+.++|.+||..|||..|.|+.
T Consensus 3 ~~~l~V~nLp~~~~e~~l---~~~F~~~G~i~~v~i~~d~~~g-----~s~g~afV~f~~~~~A~~Ai~~l~g~~l~g~~ 74 (352)
T TIGR01661 3 KTNLIVNYLPQTMTQEEI---RSLFTSIGEIESCKLVRDKVTG-----QSLGYGFVNYVRPEDAEKAVNSLNGLRLQNKT 74 (352)
T ss_pred CcEEEEeCCCCCCCHHHH---HHHHHccCCEEEEEEEEcCCCC-----ccceEEEEEECcHHHHHHHHhhcccEEECCee
Confidence 688999999999999999 8999999999999999987654 35678999999999999999999999999999
Q ss_pred EEEeecCCCCcccccCCCCCCCCCCcccccCCCCCCCccHHHHHhhhcc
Q 003574 184 LKACFGTTKYCHAWLRNVPCTNPDCLYLHEVGSQEDSFTKDEIISAYTR 232 (810)
Q Consensus 184 LRASfGTTKYCs~FLRg~~C~N~dC~YLHE~g~~~DsfTKeEm~s~~~~ 232 (810)
|+|.|+..+.- -++ ...+|+.-+. ..+|.++|......
T Consensus 75 i~v~~a~~~~~--~~~------~~~l~v~~l~---~~~~~~~l~~~f~~ 112 (352)
T TIGR01661 75 IKVSYARPSSD--SIK------GANLYVSGLP---KTMTQHELESIFSP 112 (352)
T ss_pred EEEEeeccccc--ccc------cceEEECCcc---ccCCHHHHHHHHhc
Confidence 99999865421 111 1234444333 34577777765443
No 8
>PF14259 RRM_6: RNA recognition motif (a.k.a. RRM, RBD, or RNP domain); PDB: 2DNN_A 1WI6_A 2EVZ_A 2ADC_A 1QM9_A 2KG1_A 2HGN_A 1U2F_A 2G4B_A 2HZC_A ....
Probab=99.33 E-value=6e-12 Score=103.38 Aligned_cols=70 Identities=33% Similarity=0.675 Sum_probs=62.4
Q ss_pred EEEeCCCCCCChhHHHHHHHhhccCcceeEEEEeecCCCcccccCCCceEEEEEeCCHHHHHHHHHHhCCCccCCcEEE
Q 003574 107 VYIVGLPLNLGDEDLLQRREYFGQYGKVLKVSMSRTAAGVIQQFPNNTCSVYITYSKEEEAVRCIQSVHGFVLEGKSLK 185 (810)
Q Consensus 107 VYV~GLP~~iaEEDLLr~~EyFGQYGkI~KIvInrdk~g~~~q~~~~~gsAYVTFs~~EDA~rAI~aLDG~~LDGR~LR 185 (810)
|||+|||+.+++++| .++|.+||.|.+|.+.+++.+ ..++.|||+|.+.++|.+|++.++|..++||.|+
T Consensus 1 v~i~nlp~~~~~~~l---~~~f~~~g~v~~v~~~~~~~~------~~~~~a~v~f~~~~~a~~al~~~~~~~~~g~~l~ 70 (70)
T PF14259_consen 1 VYISNLPPSTTEEDL---RNFFSRFGPVEKVRLIKNKDG------QSRGFAFVEFSSEEDAKRALELLNGKEIDGRKLR 70 (70)
T ss_dssp EEEESSTTT--HHHH---HHHCTTSSBEEEEEEEESTTS------SEEEEEEEEESSHHHHHHHHHHHTTEEETTEEEE
T ss_pred CEEeCCCCCCCHHHH---HHHHHhcCCcceEEEEeeecc------ccCCEEEEEeCCHHHHHHHHHHCCCcEECCEEcC
Confidence 799999999999999 899999999999999987553 2467899999999999999999999999999986
No 9
>KOG0125 consensus Ataxin 2-binding protein (RRM superfamily) [General function prediction only]
Probab=99.32 E-value=2.5e-12 Score=137.27 Aligned_cols=80 Identities=26% Similarity=0.475 Sum_probs=74.1
Q ss_pred ccCeEEEeCCCCCCChhHHHHHHHhhccCcceeEEEEeecCCCcccccCCCceEEEEEeCCHHHHHHHHHHhCCCccCCc
Q 003574 103 QRNLVYIVGLPLNLGDEDLLQRREYFGQYGKVLKVSMSRTAAGVIQQFPNNTCSVYITYSKEEEAVRCIQSVHGFVLEGK 182 (810)
Q Consensus 103 QkNLVYV~GLP~~iaEEDLLr~~EyFGQYGkI~KIvInrdk~g~~~q~~~~~gsAYVTFs~~EDA~rAI~aLDG~~LDGR 182 (810)
..+.|||.|||++++|.|| +.||+|||+|.+|.|..+..| ++|++||||++.+||++|-++|||..++||
T Consensus 95 ~pkRLhVSNIPFrFRdpDL---~aMF~kfG~VldVEIIfNERG-------SKGFGFVTmen~~dadRARa~LHgt~VEGR 164 (376)
T KOG0125|consen 95 TPKRLHVSNIPFRFRDPDL---RAMFEKFGKVLDVEIIFNERG-------SKGFGFVTMENPADADRARAELHGTVVEGR 164 (376)
T ss_pred CCceeEeecCCccccCccH---HHHHHhhCceeeEEEEeccCC-------CCccceEEecChhhHHHHHHHhhcceeece
Confidence 4677999999999999999 999999999999999887654 356789999999999999999999999999
Q ss_pred EEEEeecCCC
Q 003574 183 SLKACFGTTK 192 (810)
Q Consensus 183 ~LRASfGTTK 192 (810)
+|.|.-+|.+
T Consensus 165 kIEVn~ATar 174 (376)
T KOG0125|consen 165 KIEVNNATAR 174 (376)
T ss_pred EEEEeccchh
Confidence 9999999998
No 10
>smart00362 RRM_2 RNA recognition motif.
Probab=99.26 E-value=2.6e-11 Score=94.98 Aligned_cols=72 Identities=25% Similarity=0.600 Sum_probs=64.6
Q ss_pred eEEEeCCCCCCChhHHHHHHHhhccCcceeEEEEeecCCCcccccCCCceEEEEEeCCHHHHHHHHHHhCCCccCCcEEE
Q 003574 106 LVYIVGLPLNLGDEDLLQRREYFGQYGKVLKVSMSRTAAGVIQQFPNNTCSVYITYSKEEEAVRCIQSVHGFVLEGKSLK 185 (810)
Q Consensus 106 LVYV~GLP~~iaEEDLLr~~EyFGQYGkI~KIvInrdk~g~~~q~~~~~gsAYVTFs~~EDA~rAI~aLDG~~LDGR~LR 185 (810)
.|||.|||..+++++| +++|.+||+|..|.+.++. + .+.+.|||+|.+.++|.+|+..++|..++|+.|+
T Consensus 1 ~v~i~~l~~~~~~~~l---~~~~~~~g~v~~~~~~~~~-~------~~~~~~~v~f~~~~~a~~a~~~~~~~~~~~~~i~ 70 (72)
T smart00362 1 TLFVGNLPPDVTEEDL---KELFSKFGPIESVKIPKDT-G------KSKGFAFVEFESEEDAEKAIEALNGTKLGGRPLR 70 (72)
T ss_pred CEEEcCCCCcCCHHHH---HHHHHhcCCEEEEEEecCC-C------CCCceEEEEeCCHHHHHHHHHHhCCcEECCEEEe
Confidence 4899999999999999 8999999999999998765 2 2456899999999999999999999999999998
Q ss_pred Ee
Q 003574 186 AC 187 (810)
Q Consensus 186 AS 187 (810)
|.
T Consensus 71 v~ 72 (72)
T smart00362 71 VE 72 (72)
T ss_pred eC
Confidence 73
No 11
>TIGR01659 sex-lethal sex-lethal family splicing factor. This model describes the sex-lethal family of splicing factors found in Dipteran insects. The sex-lethal phenotype, however, may be limited to the Melanogasters and closely related species. In Drosophila the protein acts as an inhibitor of splicing. This subfamily is most closely related to the ELAV/HUD subfamily of splicing factors (TIGR01661).
Probab=99.26 E-value=1.7e-11 Score=132.45 Aligned_cols=83 Identities=17% Similarity=0.313 Sum_probs=74.6
Q ss_pred ccccCeEEEeCCCCCCChhHHHHHHHhhccCcceeEEEEeecCCCcccccCCCceEEEEEeCCHHHHHHHHHHhCCCccC
Q 003574 101 VIQRNLVYIVGLPLNLGDEDLLQRREYFGQYGKVLKVSMSRTAAGVIQQFPNNTCSVYITYSKEEEAVRCIQSVHGFVLE 180 (810)
Q Consensus 101 VIQkNLVYV~GLP~~iaEEDLLr~~EyFGQYGkI~KIvInrdk~g~~~q~~~~~gsAYVTFs~~EDA~rAI~aLDG~~LD 180 (810)
......|||++||+++++++| +++|.+||+|+.|.|.++..+. ..+++|||+|.++++|.+||..|||..+.
T Consensus 104 ~~~~~~LfVgnLp~~~te~~L---~~lF~~~G~V~~v~i~~d~~tg-----~srGyaFVeF~~~e~A~~Ai~~LnG~~l~ 175 (346)
T TIGR01659 104 NNSGTNLIVNYLPQDMTDREL---YALFRTIGPINTCRIMRDYKTG-----YSFGYAFVDFGSEADSQRAIKNLNGITVR 175 (346)
T ss_pred CCCCcEEEEeCCCCCCCHHHH---HHHHHhcCCEEEEEEEecCCCC-----ccCcEEEEEEccHHHHHHHHHHcCCCccC
Confidence 345678999999999999999 8999999999999999886654 34678999999999999999999999999
Q ss_pred CcEEEEeecCC
Q 003574 181 GKSLKACFGTT 191 (810)
Q Consensus 181 GR~LRASfGTT 191 (810)
|++|+|.|+..
T Consensus 176 gr~i~V~~a~p 186 (346)
T TIGR01659 176 NKRLKVSYARP 186 (346)
T ss_pred Cceeeeecccc
Confidence 99999999764
No 12
>KOG0114 consensus Predicted RNA-binding protein (RRM superfamily) [General function prediction only]
Probab=99.25 E-value=1.9e-11 Score=113.72 Aligned_cols=83 Identities=18% Similarity=0.497 Sum_probs=72.8
Q ss_pred ccccccc--cCeEEEeCCCCCCChhHHHHHHHhhccCcceeEEEEeecCCCcccccCCCceEEEEEeCCHHHHHHHHHHh
Q 003574 97 SSVRVIQ--RNLVYIVGLPLNLGDEDLLQRREYFGQYGKVLKVSMSRTAAGVIQQFPNNTCSVYITYSKEEEAVRCIQSV 174 (810)
Q Consensus 97 anvRVIQ--kNLVYV~GLP~~iaEEDLLr~~EyFGQYGkI~KIvInrdk~g~~~q~~~~~gsAYVTFs~~EDA~rAI~aL 174 (810)
.+.|+-| ..++||.|||++|+.|++ +|+||+||.|..|+|..++.+ +|.|||.|++..||.+|...|
T Consensus 9 ~~~rlppevnriLyirNLp~~ITseem---ydlFGkyg~IrQIRiG~~k~T--------rGTAFVVYedi~dAk~A~dhl 77 (124)
T KOG0114|consen 9 QNIRLPPEVNRILYIRNLPFKITSEEM---YDLFGKYGTIRQIRIGNTKET--------RGTAFVVYEDIFDAKKACDHL 77 (124)
T ss_pred CCCCCChhhheeEEEecCCccccHHHH---HHHhhcccceEEEEecCccCc--------CceEEEEehHhhhHHHHHHHh
Confidence 3444443 458999999999999999 999999999999999876654 578999999999999999999
Q ss_pred CCCccCCcEEEEeecC
Q 003574 175 HGFVLEGKSLKACFGT 190 (810)
Q Consensus 175 DG~~LDGR~LRASfGT 190 (810)
.|+.+++|.|.|-|-+
T Consensus 78 sg~n~~~ryl~vlyyq 93 (124)
T KOG0114|consen 78 SGYNVDNRYLVVLYYQ 93 (124)
T ss_pred cccccCCceEEEEecC
Confidence 9999999999998843
No 13
>PLN03120 nucleic acid binding protein; Provisional
Probab=99.24 E-value=2.8e-11 Score=126.80 Aligned_cols=76 Identities=18% Similarity=0.321 Sum_probs=68.5
Q ss_pred ccCeEEEeCCCCCCChhHHHHHHHhhccCcceeEEEEeecCCCcccccCCCceEEEEEeCCHHHHHHHHHHhCCCccCCc
Q 003574 103 QRNLVYIVGLPLNLGDEDLLQRREYFGQYGKVLKVSMSRTAAGVIQQFPNNTCSVYITYSKEEEAVRCIQSVHGFVLEGK 182 (810)
Q Consensus 103 QkNLVYV~GLP~~iaEEDLLr~~EyFGQYGkI~KIvInrdk~g~~~q~~~~~gsAYVTFs~~EDA~rAI~aLDG~~LDGR 182 (810)
..+.|||+|||+.+++++| ++||++||+|.+|.|.++.. .+++|||||.++++|..||. |||..|+||
T Consensus 3 ~~rtVfVgNLs~~tTE~dL---refFS~~G~I~~V~I~~d~~--------~~GfAFVtF~d~eaAe~All-LnG~~l~gr 70 (260)
T PLN03120 3 QVRTVKVSNVSLKATERDI---KEFFSFSGDIEYVEMQSENE--------RSQIAYVTFKDPQGAETALL-LSGATIVDQ 70 (260)
T ss_pred CCCEEEEeCCCCCCCHHHH---HHHHHhcCCeEEEEEeecCC--------CCCEEEEEeCcHHHHHHHHH-hcCCeeCCc
Confidence 3568999999999999999 89999999999999988653 24689999999999999995 999999999
Q ss_pred EEEEeecC
Q 003574 183 SLKACFGT 190 (810)
Q Consensus 183 ~LRASfGT 190 (810)
.|+|.++.
T Consensus 71 ~V~Vt~a~ 78 (260)
T PLN03120 71 SVTITPAE 78 (260)
T ss_pred eEEEEecc
Confidence 99999854
No 14
>TIGR01659 sex-lethal sex-lethal family splicing factor. This model describes the sex-lethal family of splicing factors found in Dipteran insects. The sex-lethal phenotype, however, may be limited to the Melanogasters and closely related species. In Drosophila the protein acts as an inhibitor of splicing. This subfamily is most closely related to the ELAV/HUD subfamily of splicing factors (TIGR01661).
Probab=99.21 E-value=5e-11 Score=128.89 Aligned_cols=83 Identities=23% Similarity=0.499 Sum_probs=73.8
Q ss_pred cccCeEEEeCCCCCCChhHHHHHHHhhccCcceeEEEEeecCCCcccccCCCceEEEEEeCCHHHHHHHHHHhCCCccCC
Q 003574 102 IQRNLVYIVGLPLNLGDEDLLQRREYFGQYGKVLKVSMSRTAAGVIQQFPNNTCSVYITYSKEEEAVRCIQSVHGFVLEG 181 (810)
Q Consensus 102 IQkNLVYV~GLP~~iaEEDLLr~~EyFGQYGkI~KIvInrdk~g~~~q~~~~~gsAYVTFs~~EDA~rAI~aLDG~~LDG 181 (810)
++...|||.|||+.+++|+| +++|++||+|..|.|.+++.+. .++++|||+|.+.++|++||+.|||..++|
T Consensus 191 ~~~~~lfV~nLp~~vtee~L---~~~F~~fG~V~~v~i~~d~~tg-----~~kG~aFV~F~~~e~A~~Ai~~lng~~~~g 262 (346)
T TIGR01659 191 IKDTNLYVTNLPRTITDDQL---DTIFGKYGQIVQKNILRDKLTG-----TPRGVAFVRFNKREEAQEAISALNNVIPEG 262 (346)
T ss_pred cccceeEEeCCCCcccHHHH---HHHHHhcCCEEEEEEeecCCCC-----ccceEEEEEECCHHHHHHHHHHhCCCccCC
Confidence 34567999999999999999 8999999999999999887544 356789999999999999999999999977
Q ss_pred --cEEEEeecCCC
Q 003574 182 --KSLKACFGTTK 192 (810)
Q Consensus 182 --R~LRASfGTTK 192 (810)
++|+|.|+..+
T Consensus 263 ~~~~l~V~~a~~~ 275 (346)
T TIGR01659 263 GSQPLTVRLAEEH 275 (346)
T ss_pred CceeEEEEECCcc
Confidence 68999998875
No 15
>KOG0148 consensus Apoptosis-promoting RNA-binding protein TIA-1/TIAR (RRM superfamily) [RNA processing and modification; Translation, ribosomal structure and biogenesis]
Probab=99.21 E-value=2.9e-11 Score=126.80 Aligned_cols=78 Identities=15% Similarity=0.377 Sum_probs=70.5
Q ss_pred ccccCeEEEeCCCCCCChhHHHHHHHhhccCcceeEEEEeecCCCcccccCCCceEEEEEeCCHHHHHHHHHHhCCCccC
Q 003574 101 VIQRNLVYIVGLPLNLGDEDLLQRREYFGQYGKVLKVSMSRTAAGVIQQFPNNTCSVYITYSKEEEAVRCIQSVHGFVLE 180 (810)
Q Consensus 101 VIQkNLVYV~GLP~~iaEEDLLr~~EyFGQYGkI~KIvInrdk~g~~~q~~~~~gsAYVTFs~~EDA~rAI~aLDG~~LD 180 (810)
--....|||+||+.-++|++| ++.|.+||.|.+|+|.+++ ++|||.|+++|.|.+||..|||..+.
T Consensus 161 sp~NtsVY~G~I~~~lte~~m---r~~Fs~fG~I~EVRvFk~q-----------GYaFVrF~tkEaAahAIv~mNntei~ 226 (321)
T KOG0148|consen 161 SPDNTSVYVGNIASGLTEDLM---RQTFSPFGPIQEVRVFKDQ-----------GYAFVRFETKEAAAHAIVQMNNTEIG 226 (321)
T ss_pred CCCCceEEeCCcCccccHHHH---HHhcccCCcceEEEEeccc-----------ceEEEEecchhhHHHHHHHhcCceeC
Confidence 344668999999999988777 8999999999999999863 47899999999999999999999999
Q ss_pred CcEEEEeecCCC
Q 003574 181 GKSLKACFGTTK 192 (810)
Q Consensus 181 GR~LRASfGTTK 192 (810)
|.++|++||.+-
T Consensus 227 G~~VkCsWGKe~ 238 (321)
T KOG0148|consen 227 GQLVRCSWGKEG 238 (321)
T ss_pred ceEEEEeccccC
Confidence 999999999875
No 16
>cd00590 RRM RRM (RNA recognition motif), also known as RBD (RNA binding domain) or RNP (ribonucleoprotein domain), is a highly abundant domain in eukaryotes found in proteins involved in post-transcriptional gene expression processes including mRNA and rRNA processing, RNA export, and RNA stability. This domain is 90 amino acids in length and consists of a four-stranded beta-sheet packed against two alpha-helices. RRM usually interacts with ssRNA, but is also known to interact with ssDNA as well as proteins. RRM binds a variable number of nucleotides, ranging from two to eight. The active site includes three aromatic side-chains located within the conserved RNP1 and RNP2 motifs of the domain. The RRM domain is found in a variety heterogeneous nuclear ribonucleoproteins (hnRNPs), proteins implicated in regulation of alternative splicing, and protein components of small nuclear ribonucleoproteins (snRNPs).
Probab=99.21 E-value=9.5e-11 Score=92.28 Aligned_cols=74 Identities=28% Similarity=0.594 Sum_probs=66.7
Q ss_pred eEEEeCCCCCCChhHHHHHHHhhccCcceeEEEEeecCCCcccccCCCceEEEEEeCCHHHHHHHHHHhCCCccCCcEEE
Q 003574 106 LVYIVGLPLNLGDEDLLQRREYFGQYGKVLKVSMSRTAAGVIQQFPNNTCSVYITYSKEEEAVRCIQSVHGFVLEGKSLK 185 (810)
Q Consensus 106 LVYV~GLP~~iaEEDLLr~~EyFGQYGkI~KIvInrdk~g~~~q~~~~~gsAYVTFs~~EDA~rAI~aLDG~~LDGR~LR 185 (810)
.|||.|||+.+++++| +++|.+||.|.++.+..+..+ .+.+.|||+|.+.++|..|+..++|..++|+.|.
T Consensus 1 ~i~i~~l~~~~~~~~i---~~~~~~~g~i~~~~~~~~~~~------~~~~~~~v~f~s~~~a~~a~~~~~~~~~~~~~~~ 71 (74)
T cd00590 1 TLFVGNLPPDVTEEDL---RELFSKFGKVESVRIVRDKDT------KSKGFAFVEFEDEEDAEKALEALNGKELGGRPLR 71 (74)
T ss_pred CEEEeCCCCccCHHHH---HHHHHhcCCEEEEEEeeCCCC------CcceEEEEEECCHHHHHHHHHHhCCCeECCeEEE
Confidence 4899999999999999 899999999999999876543 2466899999999999999999999999999999
Q ss_pred Eee
Q 003574 186 ACF 188 (810)
Q Consensus 186 ASf 188 (810)
|.|
T Consensus 72 v~~ 74 (74)
T cd00590 72 VEF 74 (74)
T ss_pred EeC
Confidence 875
No 17
>COG0724 RNA-binding proteins (RRM domain) [General function prediction only]
Probab=99.20 E-value=6.5e-11 Score=111.95 Aligned_cols=80 Identities=28% Similarity=0.524 Sum_probs=73.0
Q ss_pred cCeEEEeCCCCCCChhHHHHHHHhhccCcceeEEEEeecCCCcccccCCCceEEEEEeCCHHHHHHHHHHhCCCccCCcE
Q 003574 104 RNLVYIVGLPLNLGDEDLLQRREYFGQYGKVLKVSMSRTAAGVIQQFPNNTCSVYITYSKEEEAVRCIQSVHGFVLEGKS 183 (810)
Q Consensus 104 kNLVYV~GLP~~iaEEDLLr~~EyFGQYGkI~KIvInrdk~g~~~q~~~~~gsAYVTFs~~EDA~rAI~aLDG~~LDGR~ 183 (810)
...|||+|||+.+++++| +++|.+||.|..|.|..++.++ ..+++|||+|.+.++|..||..++|..+.||.
T Consensus 115 ~~~l~v~nL~~~~~~~~l---~~~F~~~g~~~~~~~~~d~~~~-----~~~g~~~v~f~~~~~~~~a~~~~~~~~~~~~~ 186 (306)
T COG0724 115 NNTLFVGNLPYDVTEEDL---RELFKKFGPVKRVRLVRDRETG-----KSRGFAFVEFESEESAEKAIEELNGKELEGRP 186 (306)
T ss_pred CceEEEeCCCCCCCHHHH---HHHHHhcCceeEEEeeeccccC-----ccCceEEEEecCHHHHHHHHHHcCCCeECCce
Confidence 489999999999999999 8999999999999999886433 35778999999999999999999999999999
Q ss_pred EEEeecCC
Q 003574 184 LKACFGTT 191 (810)
Q Consensus 184 LRASfGTT 191 (810)
|+|.+..-
T Consensus 187 ~~v~~~~~ 194 (306)
T COG0724 187 LRVQKAQP 194 (306)
T ss_pred eEeecccc
Confidence 99999663
No 18
>TIGR01628 PABP-1234 polyadenylate binding protein, human types 1, 2, 3, 4 family. There are four paralogs in Homo sapiens which are expressed in testis, platelets, broadly expressed, or of unknown tissue range.
Probab=99.20 E-value=3.9e-11 Score=134.50 Aligned_cols=83 Identities=28% Similarity=0.424 Sum_probs=74.5
Q ss_pred ccccCeEEEeCCCCCCChhHHHHHHHhhccCcceeEEEEeecCCCcccccCCCceEEEEEeCCHHHHHHHHHHhCCCccC
Q 003574 101 VIQRNLVYIVGLPLNLGDEDLLQRREYFGQYGKVLKVSMSRTAAGVIQQFPNNTCSVYITYSKEEEAVRCIQSVHGFVLE 180 (810)
Q Consensus 101 VIQkNLVYV~GLP~~iaEEDLLr~~EyFGQYGkI~KIvInrdk~g~~~q~~~~~gsAYVTFs~~EDA~rAI~aLDG~~LD 180 (810)
..+...|||+||++.+++++| +++|++||.|..|.|.++..+ ..+++|||+|.+.++|.+||..|||..++
T Consensus 282 ~~~~~~l~V~nl~~~~~~~~L---~~~F~~~G~i~~~~i~~d~~g------~~~g~gfV~f~~~~~A~~A~~~~~g~~~~ 352 (562)
T TIGR01628 282 KAQGVNLYVKNLDDTVTDEKL---RELFSECGEITSAKVMLDEKG------VSRGFGFVCFSNPEEANRAVTEMHGRMLG 352 (562)
T ss_pred ccCCCEEEEeCCCCccCHHHH---HHHHHhcCCeEEEEEEECCCC------CcCCeEEEEeCCHHHHHHHHHHhcCCeeC
Confidence 345567999999999999999 899999999999999988543 35678999999999999999999999999
Q ss_pred CcEEEEeecCCC
Q 003574 181 GKSLKACFGTTK 192 (810)
Q Consensus 181 GR~LRASfGTTK 192 (810)
||.|+|.|+..|
T Consensus 353 gk~l~V~~a~~k 364 (562)
T TIGR01628 353 GKPLYVALAQRK 364 (562)
T ss_pred CceeEEEeccCc
Confidence 999999998766
No 19
>TIGR01645 half-pint poly-U binding splicing factor, half-pint family. In the case of PUF60 (GP|6176532), in complex with p54, and in the presence of U2AF, facilitates association of U2 snRNP with pre-mRNA.
Probab=99.19 E-value=5.2e-11 Score=136.82 Aligned_cols=82 Identities=22% Similarity=0.406 Sum_probs=74.8
Q ss_pred cCeEEEeCCCCCCChhHHHHHHHhhccCcceeEEEEeecCCCcccccCCCceEEEEEeCCHHHHHHHHHHhCCCccCCcE
Q 003574 104 RNLVYIVGLPLNLGDEDLLQRREYFGQYGKVLKVSMSRTAAGVIQQFPNNTCSVYITYSKEEEAVRCIQSVHGFVLEGKS 183 (810)
Q Consensus 104 kNLVYV~GLP~~iaEEDLLr~~EyFGQYGkI~KIvInrdk~g~~~q~~~~~gsAYVTFs~~EDA~rAI~aLDG~~LDGR~ 183 (810)
.+.|||+||++.+++++| +++|.+||+|..+.|.++..++ ..+|+|||+|.+.++|.+||..|||+.++|+.
T Consensus 204 ~~rLfVgnLp~~vteedL---k~lFs~FG~I~svrl~~D~~tg-----ksKGfGFVeFe~~e~A~kAI~amNg~elgGr~ 275 (612)
T TIGR01645 204 FNRIYVASVHPDLSETDI---KSVFEAFGEIVKCQLARAPTGR-----GHKGYGFIEYNNLQSQSEAIASMNLFDLGGQY 275 (612)
T ss_pred cceEEeecCCCCCCHHHH---HHHHhhcCCeeEEEEEecCCCC-----CcCCeEEEEECCHHHHHHHHHHhCCCeeCCeE
Confidence 368999999999999999 8999999999999999987654 35678999999999999999999999999999
Q ss_pred EEEeecCCCC
Q 003574 184 LKACFGTTKY 193 (810)
Q Consensus 184 LRASfGTTKY 193 (810)
|||.++.++-
T Consensus 276 LrV~kAi~pP 285 (612)
T TIGR01645 276 LRVGKCVTPP 285 (612)
T ss_pred EEEEecCCCc
Confidence 9999998764
No 20
>TIGR01645 half-pint poly-U binding splicing factor, half-pint family. In the case of PUF60 (GP|6176532), in complex with p54, and in the presence of U2AF, facilitates association of U2 snRNP with pre-mRNA.
Probab=99.19 E-value=4.6e-11 Score=137.30 Aligned_cols=78 Identities=21% Similarity=0.395 Sum_probs=71.0
Q ss_pred cCeEEEeCCCCCCChhHHHHHHHhhccCcceeEEEEeecCCCcccccCCCceEEEEEeCCHHHHHHHHHHhCCCccCCcE
Q 003574 104 RNLVYIVGLPLNLGDEDLLQRREYFGQYGKVLKVSMSRTAAGVIQQFPNNTCSVYITYSKEEEAVRCIQSVHGFVLEGKS 183 (810)
Q Consensus 104 kNLVYV~GLP~~iaEEDLLr~~EyFGQYGkI~KIvInrdk~g~~~q~~~~~gsAYVTFs~~EDA~rAI~aLDG~~LDGR~ 183 (810)
...|||+||++.+++++| +++|.+||.|.+|.|.+++.++ .++|+|||+|.+.++|.+||..|||..++||.
T Consensus 107 ~~rLfVGnLp~~~tEe~L---r~lF~~fG~I~sV~I~~D~~Tg-----kskGfAFVeF~s~e~A~~Ai~~lnG~~i~GR~ 178 (612)
T TIGR01645 107 MCRVYVGSISFELREDTI---RRAFDPFGPIKSINMSWDPATG-----KHKGFAFVEYEVPEAAQLALEQMNGQMLGGRN 178 (612)
T ss_pred CCEEEEcCCCCCCCHHHH---HHHHHccCCEEEEEEeecCCCC-----CcCCeEEEEeCcHHHHHHHHHhcCCeEEecce
Confidence 357999999999999999 8999999999999999887654 35778999999999999999999999999999
Q ss_pred EEEeec
Q 003574 184 LKACFG 189 (810)
Q Consensus 184 LRASfG 189 (810)
|+|.+.
T Consensus 179 IkV~rp 184 (612)
T TIGR01645 179 IKVGRP 184 (612)
T ss_pred eeeccc
Confidence 999864
No 21
>smart00360 RRM RNA recognition motif.
Probab=99.19 E-value=7.6e-11 Score=91.84 Aligned_cols=71 Identities=27% Similarity=0.553 Sum_probs=63.1
Q ss_pred EeCCCCCCChhHHHHHHHhhccCcceeEEEEeecCCCcccccCCCceEEEEEeCCHHHHHHHHHHhCCCccCCcEEEEe
Q 003574 109 IVGLPLNLGDEDLLQRREYFGQYGKVLKVSMSRTAAGVIQQFPNNTCSVYITYSKEEEAVRCIQSVHGFVLEGKSLKAC 187 (810)
Q Consensus 109 V~GLP~~iaEEDLLr~~EyFGQYGkI~KIvInrdk~g~~~q~~~~~gsAYVTFs~~EDA~rAI~aLDG~~LDGR~LRAS 187 (810)
|.|||..+++++| +++|.+||.|..+.|..++..+ ...++|||+|.+.++|.+||..++|..++|+.|+|.
T Consensus 1 i~~l~~~~~~~~l---~~~f~~~g~v~~~~i~~~~~~~-----~~~~~a~v~f~~~~~a~~a~~~~~~~~~~~~~~~v~ 71 (71)
T smart00360 1 VGNLPPDVTEEEL---RELFSKFGKIESVRLVRDKDTG-----KSKGFAFVEFESEEDAEKALEALNGKELDGRPLKVK 71 (71)
T ss_pred CCCCCcccCHHHH---HHHHHhhCCEeEEEEEeCCCCC-----CCCceEEEEeCCHHHHHHHHHHcCCCeeCCcEEEeC
Confidence 5799999999999 8999999999999998765432 356789999999999999999999999999999874
No 22
>TIGR01622 SF-CC1 splicing factor, CC1-like family. A homologous gene from Plasmodium falciparum was identified in the course of the analysis of that genome at TIGR and was included in the model.
Probab=99.17 E-value=8.4e-11 Score=127.75 Aligned_cols=79 Identities=23% Similarity=0.475 Sum_probs=72.6
Q ss_pred cCeEEEeCCCCCCChhHHHHHHHhhccCcceeEEEEeecCCCcccccCCCceEEEEEeCCHHHHHHHHHHhCCCccCCcE
Q 003574 104 RNLVYIVGLPLNLGDEDLLQRREYFGQYGKVLKVSMSRTAAGVIQQFPNNTCSVYITYSKEEEAVRCIQSVHGFVLEGKS 183 (810)
Q Consensus 104 kNLVYV~GLP~~iaEEDLLr~~EyFGQYGkI~KIvInrdk~g~~~q~~~~~gsAYVTFs~~EDA~rAI~aLDG~~LDGR~ 183 (810)
...|||+|||..+++++| .++|.+||.|..|.|.++..++ ..+++|||+|.+.++|.+||..|||..|.|+.
T Consensus 186 ~~~l~v~nl~~~~te~~l---~~~f~~~G~i~~v~~~~d~~~g-----~~~g~afV~f~~~e~A~~A~~~l~g~~i~g~~ 257 (457)
T TIGR01622 186 FLKLYVGNLHFNITEQEL---RQIFEPFGDIEDVQLHRDPETG-----RSKGFGFIQFHDAEEAKEALEVMNGFELAGRP 257 (457)
T ss_pred CCEEEEcCCCCCCCHHHH---HHHHHhcCCeEEEEEEEcCCCC-----ccceEEEEEECCHHHHHHHHHhcCCcEECCEE
Confidence 568999999999999999 8999999999999999887653 24678999999999999999999999999999
Q ss_pred EEEeecC
Q 003574 184 LKACFGT 190 (810)
Q Consensus 184 LRASfGT 190 (810)
|+|.|+.
T Consensus 258 i~v~~a~ 264 (457)
T TIGR01622 258 IKVGYAQ 264 (457)
T ss_pred EEEEEcc
Confidence 9999987
No 23
>KOG0122 consensus Translation initiation factor 3, subunit g (eIF-3g) [Translation, ribosomal structure and biogenesis]
Probab=99.16 E-value=7.9e-11 Score=122.16 Aligned_cols=82 Identities=18% Similarity=0.412 Sum_probs=76.5
Q ss_pred ccCeEEEeCCCCCCChhHHHHHHHhhccCcceeEEEEeecCCCcccccCCCceEEEEEeCCHHHHHHHHHHhCCCccCCc
Q 003574 103 QRNLVYIVGLPLNLGDEDLLQRREYFGQYGKVLKVSMSRTAAGVIQQFPNNTCSVYITYSKEEEAVRCIQSVHGFVLEGK 182 (810)
Q Consensus 103 QkNLVYV~GLP~~iaEEDLLr~~EyFGQYGkI~KIvInrdk~g~~~q~~~~~gsAYVTFs~~EDA~rAI~aLDG~~LDGR 182 (810)
..+.|-|.||+.++++++| .|+|.+||.|.+|.|.+++.++ ..+|+|||+|...+||.+||..|||.-++.-
T Consensus 188 D~~tvRvtNLsed~~E~dL---~eLf~~fg~i~rvylardK~TG-----~~kGFAFVtF~sRddA~rAI~~LnG~gyd~L 259 (270)
T KOG0122|consen 188 DEATVRVTNLSEDMREDDL---EELFRPFGPITRVYLARDKETG-----LSKGFAFVTFESRDDAARAIADLNGYGYDNL 259 (270)
T ss_pred ccceeEEecCccccChhHH---HHHhhccCccceeEEEEccccC-----cccceEEEEEecHHHHHHHHHHccCcccceE
Confidence 5678999999999999999 8999999999999999999876 3678999999999999999999999999999
Q ss_pred EEEEeecCCC
Q 003574 183 SLKACFGTTK 192 (810)
Q Consensus 183 ~LRASfGTTK 192 (810)
+|+|.|++.+
T Consensus 260 ILrvEwskP~ 269 (270)
T KOG0122|consen 260 ILRVEWSKPS 269 (270)
T ss_pred EEEEEecCCC
Confidence 9999998765
No 24
>TIGR01642 U2AF_lg U2 snRNP auxilliary factor, large subunit, splicing factor. Members of this subfamily are found in plants, metazoa and fungi.
Probab=99.15 E-value=2e-10 Score=126.32 Aligned_cols=81 Identities=17% Similarity=0.317 Sum_probs=73.0
Q ss_pred ccCeEEEeCCCCCCChhHHHHHHHhhccCcceeEEEEeecCCCcccccCCCceEEEEEeCCHHHHHHHHHHhCCCccCCc
Q 003574 103 QRNLVYIVGLPLNLGDEDLLQRREYFGQYGKVLKVSMSRTAAGVIQQFPNNTCSVYITYSKEEEAVRCIQSVHGFVLEGK 182 (810)
Q Consensus 103 QkNLVYV~GLP~~iaEEDLLr~~EyFGQYGkI~KIvInrdk~g~~~q~~~~~gsAYVTFs~~EDA~rAI~aLDG~~LDGR 182 (810)
..+.|||+|||..+++++| +++|.+||.|..+.|.++..++ ...|+|||+|.+.++|..||+.|||..|+|+
T Consensus 294 ~~~~l~v~nlp~~~~~~~l---~~~f~~~G~i~~~~~~~~~~~g-----~~~g~afv~f~~~~~a~~A~~~l~g~~~~~~ 365 (509)
T TIGR01642 294 SKDRIYIGNLPLYLGEDQI---KELLESFGDLKAFNLIKDIATG-----LSKGYAFCEYKDPSVTDVAIAALNGKDTGDN 365 (509)
T ss_pred CCCEEEEeCCCCCCCHHHH---HHHHHhcCCeeEEEEEecCCCC-----CcCeEEEEEECCHHHHHHHHHHcCCCEECCe
Confidence 4578999999999999999 8999999999999998876543 3567899999999999999999999999999
Q ss_pred EEEEeecCC
Q 003574 183 SLKACFGTT 191 (810)
Q Consensus 183 ~LRASfGTT 191 (810)
.|+|.|+..
T Consensus 366 ~l~v~~a~~ 374 (509)
T TIGR01642 366 KLHVQRACV 374 (509)
T ss_pred EEEEEECcc
Confidence 999999754
No 25
>KOG0107 consensus Alternative splicing factor SRp20/9G8 (RRM superfamily) [RNA processing and modification]
Probab=99.13 E-value=9.5e-11 Score=116.95 Aligned_cols=78 Identities=17% Similarity=0.310 Sum_probs=71.3
Q ss_pred cCeEEEeCCCCCCChhHHHHHHHhhccCcceeEEEEeecCCCcccccCCCceEEEEEeCCHHHHHHHHHHhCCCccCCcE
Q 003574 104 RNLVYIVGLPLNLGDEDLLQRREYFGQYGKVLKVSMSRTAAGVIQQFPNNTCSVYITYSKEEEAVRCIQSVHGFVLEGKS 183 (810)
Q Consensus 104 kNLVYV~GLP~~iaEEDLLr~~EyFGQYGkI~KIvInrdk~g~~~q~~~~~gsAYVTFs~~EDA~rAI~aLDG~~LDGR~ 183 (810)
...|||+||+...++.|| ...|+.||+|..|.|.+. +.++|||+|++..||+.|+..|||..|+|..
T Consensus 10 ~~kVYVGnL~~~a~k~eL---E~~F~~yG~lrsvWvArn----------PPGfAFVEFed~RDA~DAvr~LDG~~~cG~r 76 (195)
T KOG0107|consen 10 NTKVYVGNLGSRATKREL---ERAFSKYGPLRSVWVARN----------PPGFAFVEFEDPRDAEDAVRYLDGKDICGSR 76 (195)
T ss_pred CceEEeccCCCCcchHHH---HHHHHhcCcceeEEEeec----------CCCceEEeccCcccHHHHHhhcCCccccCce
Confidence 457999999999999999 999999999999999984 3458999999999999999999999999999
Q ss_pred EEEeecCCCCc
Q 003574 184 LKACFGTTKYC 194 (810)
Q Consensus 184 LRASfGTTKYC 194 (810)
|+|.+-+-++-
T Consensus 77 ~rVE~S~G~~r 87 (195)
T KOG0107|consen 77 IRVELSTGRPR 87 (195)
T ss_pred EEEEeecCCcc
Confidence 99999777765
No 26
>TIGR01628 PABP-1234 polyadenylate binding protein, human types 1, 2, 3, 4 family. There are four paralogs in Homo sapiens which are expressed in testis, platelets, broadly expressed, or of unknown tissue range.
Probab=99.12 E-value=1.7e-10 Score=129.37 Aligned_cols=110 Identities=16% Similarity=0.370 Sum_probs=84.9
Q ss_pred eEEEeCCCCCCChhHHHHHHHhhccCcceeEEEEeecCCCcccccCCCceEEEEEeCCHHHHHHHHHHhCCCccCCcEEE
Q 003574 106 LVYIVGLPLNLGDEDLLQRREYFGQYGKVLKVSMSRTAAGVIQQFPNNTCSVYITYSKEEEAVRCIQSVHGFVLEGKSLK 185 (810)
Q Consensus 106 LVYV~GLP~~iaEEDLLr~~EyFGQYGkI~KIvInrdk~g~~~q~~~~~gsAYVTFs~~EDA~rAI~aLDG~~LDGR~LR 185 (810)
.|||+|||+++++++| +++|++||.|.+|+|.++..+. ...|+|||+|.+.++|.+||..+++..+.|+.|+
T Consensus 2 sl~VgnLp~~vte~~L---~~~F~~~G~v~~v~v~~d~~t~-----~s~G~afV~F~~~~~A~~Al~~ln~~~i~gk~i~ 73 (562)
T TIGR01628 2 SLYVGDLDPDVTEAKL---YDLFKPFGPVLSVRVCRDSVTR-----RSLGYGYVNFQNPADAERALETMNFKRLGGKPIR 73 (562)
T ss_pred eEEEeCCCCCCCHHHH---HHHHHhcCCEEEEEEEecCCCC-----CcceEEEEEECCHHHHHHHHHHhCCCEECCeeEE
Confidence 5899999999999999 8999999999999999987654 3567899999999999999999999999999999
Q ss_pred EeecCCCCcccccCCCCCCCCCCcccccCCCCCCCccHHHHHhhhcc
Q 003574 186 ACFGTTKYCHAWLRNVPCTNPDCLYLHEVGSQEDSFTKDEIISAYTR 232 (810)
Q Consensus 186 ASfGTTKYCs~FLRg~~C~N~dC~YLHE~g~~~DsfTKeEm~s~~~~ 232 (810)
+.|..... -+|. .....+|+.-+. ...|.++|......
T Consensus 74 i~~s~~~~---~~~~---~~~~~vfV~nLp---~~~~~~~L~~~F~~ 111 (562)
T TIGR01628 74 IMWSQRDP---SLRR---SGVGNIFVKNLD---KSVDNKALFDTFSK 111 (562)
T ss_pred eecccccc---cccc---cCCCceEEcCCC---ccCCHHHHHHHHHh
Confidence 99865321 1111 112334544443 35566777765443
No 27
>KOG0111 consensus Cyclophilin-type peptidyl-prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones]
Probab=99.08 E-value=6.2e-11 Score=121.72 Aligned_cols=85 Identities=14% Similarity=0.318 Sum_probs=75.7
Q ss_pred cccccCeEEEeCCCCCCChhHHHHHHHhhccCcceeEEEEeecCCCcccccCCCceEEEEEeCCHHHHHHHHHHhCCCcc
Q 003574 100 RVIQRNLVYIVGLPLNLGDEDLLQRREYFGQYGKVLKVSMSRTAAGVIQQFPNNTCSVYITYSKEEEAVRCIQSVHGFVL 179 (810)
Q Consensus 100 RVIQkNLVYV~GLP~~iaEEDLLr~~EyFGQYGkI~KIvInrdk~g~~~q~~~~~gsAYVTFs~~EDA~rAI~aLDG~~L 179 (810)
-..||++|||+||..++++ .|| ...|-.||.|+.|.|..+-... ..++++||+|...|||..||..||+.+|
T Consensus 6 ~a~~KrtlYVGGladeVte-kvL--haAFIPFGDI~dIqiPlDyesq-----kHRgFgFVefe~aEDAaaAiDNMnesEL 77 (298)
T KOG0111|consen 6 MANQKRTLYVGGLADEVTE-KVL--HAAFIPFGDIKDIQIPLDYESQ-----KHRGFGFVEFEEAEDAAAAIDNMNESEL 77 (298)
T ss_pred ccccceeEEeccchHHHHH-HHH--Hhccccccchhhcccccchhcc-----cccceeEEEeeccchhHHHhhcCchhhh
Confidence 4568899999999999976 555 8999999999999999887654 3577899999999999999999999999
Q ss_pred CCcEEEEeecCCC
Q 003574 180 EGKSLKACFGTTK 192 (810)
Q Consensus 180 DGR~LRASfGTTK 192 (810)
.||+|||.|+..-
T Consensus 78 ~GrtirVN~AkP~ 90 (298)
T KOG0111|consen 78 FGRTIRVNLAKPE 90 (298)
T ss_pred cceeEEEeecCCc
Confidence 9999999998764
No 28
>KOG0148 consensus Apoptosis-promoting RNA-binding protein TIA-1/TIAR (RRM superfamily) [RNA processing and modification; Translation, ribosomal structure and biogenesis]
Probab=99.08 E-value=1.8e-10 Score=121.08 Aligned_cols=80 Identities=23% Similarity=0.409 Sum_probs=74.9
Q ss_pred eEEEeCCCCCCChhHHHHHHHhhccCcceeEEEEeecCCCcccccCCCceEEEEEeCCHHHHHHHHHHhCCCccCCcEEE
Q 003574 106 LVYIVGLPLNLGDEDLLQRREYFGQYGKVLKVSMSRTAAGVIQQFPNNTCSVYITYSKEEEAVRCIQSVHGFVLEGKSLK 185 (810)
Q Consensus 106 LVYV~GLP~~iaEEDLLr~~EyFGQYGkI~KIvInrdk~g~~~q~~~~~gsAYVTFs~~EDA~rAI~aLDG~~LDGR~LR 185 (810)
-|||+-|...|..|+| +|.|.+||+|.+.+|.||..+. ..+|++||.|-+++||++||+.|||..|++|.||
T Consensus 64 hvfvgdls~eI~~e~l---r~aF~pFGevS~akvirD~~T~-----KsKGYgFVSf~~k~dAEnAI~~MnGqWlG~R~IR 135 (321)
T KOG0148|consen 64 HVFVGDLSPEIDNEKL---REAFAPFGEVSDAKVIRDMNTG-----KSKGYGFVSFPNKEDAENAIQQMNGQWLGRRTIR 135 (321)
T ss_pred eEEehhcchhcchHHH---HHHhccccccccceEeecccCC-----cccceeEEeccchHHHHHHHHHhCCeeeccceee
Confidence 5999999999999998 9999999999999999997764 3567899999999999999999999999999999
Q ss_pred EeecCCCC
Q 003574 186 ACFGTTKY 193 (810)
Q Consensus 186 ASfGTTKY 193 (810)
..|+|.|-
T Consensus 136 TNWATRKp 143 (321)
T KOG0148|consen 136 TNWATRKP 143 (321)
T ss_pred ccccccCc
Confidence 99999997
No 29
>PF13893 RRM_5: RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain); PDB: 2PE8_A 2PEH_A 2D9O_A 1A9N_D 2DIT_A 3S6E_A 2LQ5_A 1SJQ_A 2AD9_A 1X4D_A ....
Probab=99.07 E-value=4.8e-10 Score=89.78 Aligned_cols=55 Identities=20% Similarity=0.518 Sum_probs=49.4
Q ss_pred HHhhccCcceeEEEEeecCCCcccccCCCceEEEEEeCCHHHHHHHHHHhCCCccCCcEEEEeec
Q 003574 125 REYFGQYGKVLKVSMSRTAAGVIQQFPNNTCSVYITYSKEEEAVRCIQSVHGFVLEGKSLKACFG 189 (810)
Q Consensus 125 ~EyFGQYGkI~KIvInrdk~g~~~q~~~~~gsAYVTFs~~EDA~rAI~aLDG~~LDGR~LRASfG 189 (810)
+++|.+||+|.+|.+.++. ++.|||+|.+.++|.+|++.|||..++|++|+|.|+
T Consensus 2 ~~~f~~fG~V~~i~~~~~~----------~~~a~V~f~~~~~A~~a~~~l~~~~~~g~~l~V~~a 56 (56)
T PF13893_consen 2 YKLFSKFGEVKKIKIFKKK----------RGFAFVEFASVEDAQKAIEQLNGRQFNGRPLKVSYA 56 (56)
T ss_dssp HHHHTTTS-EEEEEEETTS----------TTEEEEEESSHHHHHHHHHHHTTSEETTEEEEEEEE
T ss_pred hHHhCCcccEEEEEEEeCC----------CCEEEEEECCHHHHHHHHHHhCCCEECCcEEEEEEC
Confidence 6899999999999998643 257999999999999999999999999999999985
No 30
>KOG4206 consensus Spliceosomal protein snRNP-U1A/U2B [RNA processing and modification]
Probab=99.07 E-value=2.8e-10 Score=116.73 Aligned_cols=88 Identities=20% Similarity=0.419 Sum_probs=77.8
Q ss_pred cccccC-eEEEeCCCCCCChhHHHHH-HHhhccCcceeEEEEeecCCCcccccCCCceEEEEEeCCHHHHHHHHHHhCCC
Q 003574 100 RVIQRN-LVYIVGLPLNLGDEDLLQR-REYFGQYGKVLKVSMSRTAAGVIQQFPNNTCSVYITYSKEEEAVRCIQSVHGF 177 (810)
Q Consensus 100 RVIQkN-LVYV~GLP~~iaEEDLLr~-~EyFGQYGkI~KIvInrdk~g~~~q~~~~~gsAYVTFs~~EDA~rAI~aLDG~ 177 (810)
+.+..| ++||.+|+.++..++|.|+ +.+|+|||+|.+|++.++. .-+|.|||.|.+.+.|..|+.+|+|+
T Consensus 4 ~~~~pn~TlYInnLnekI~~~elkrsL~~LFsqfG~ildI~a~kt~--------KmRGQA~VvFk~~~~As~A~r~l~gf 75 (221)
T KOG4206|consen 4 MSVNPNGTLYINNLNEKIKKDELKRSLYLLFSQFGKILDISAFKTP--------KMRGQAFVVFKETEAASAALRALQGF 75 (221)
T ss_pred cccCCCceEeehhccccccHHHHHHHHHHHHHhhCCeEEEEecCCC--------CccCceEEEecChhHHHHHHHHhcCC
Confidence 444555 9999999999999998655 8899999999999998753 24678999999999999999999999
Q ss_pred ccCCcEEEEeecCCCCcc
Q 003574 178 VLEGKSLKACFGTTKYCH 195 (810)
Q Consensus 178 ~LDGR~LRASfGTTKYCs 195 (810)
.+-|+++|+.||.++-|.
T Consensus 76 pFygK~mriqyA~s~sdi 93 (221)
T KOG4206|consen 76 PFYGKPMRIQYAKSDSDI 93 (221)
T ss_pred cccCchhheecccCccch
Confidence 999999999999999774
No 31
>TIGR01649 hnRNP-L_PTB hnRNP-L/PTB/hephaestus splicing factor family. Included in this family of heterogeneous ribonucleoproteins are PTB (polypyrimidine tract binding protein ) and hnRNP-L. These proteins contain four RNA recognition motifs (rrm: pfam00067).
Probab=99.06 E-value=4.9e-10 Score=124.76 Aligned_cols=77 Identities=21% Similarity=0.368 Sum_probs=68.5
Q ss_pred ccCeEEEeCCCC-CCChhHHHHHHHhhccCcceeEEEEeecCCCcccccCCCceEEEEEeCCHHHHHHHHHHhCCCccCC
Q 003574 103 QRNLVYIVGLPL-NLGDEDLLQRREYFGQYGKVLKVSMSRTAAGVIQQFPNNTCSVYITYSKEEEAVRCIQSVHGFVLEG 181 (810)
Q Consensus 103 QkNLVYV~GLP~-~iaEEDLLr~~EyFGQYGkI~KIvInrdk~g~~~q~~~~~gsAYVTFs~~EDA~rAI~aLDG~~LDG 181 (810)
....|||+||++ .+++++| +++|++||.|.+|.|.+++ +++|||+|.+.++|.+||..|||..|+|
T Consensus 274 ~~~~l~v~nL~~~~vt~~~L---~~lF~~yG~V~~vki~~~~----------~g~afV~f~~~~~A~~Ai~~lng~~l~g 340 (481)
T TIGR01649 274 PGSVLMVSGLHQEKVNCDRL---FNLFCVYGNVERVKFMKNK----------KETALIEMADPYQAQLALTHLNGVKLFG 340 (481)
T ss_pred CCCEEEEeCCCCCCCCHHHH---HHHHHhcCCeEEEEEEeCC----------CCEEEEEECCHHHHHHHHHHhCCCEECC
Confidence 346899999998 6998888 9999999999999998752 3589999999999999999999999999
Q ss_pred cEEEEeecCCC
Q 003574 182 KSLKACFGTTK 192 (810)
Q Consensus 182 R~LRASfGTTK 192 (810)
+.|+|+|+..+
T Consensus 341 ~~l~v~~s~~~ 351 (481)
T TIGR01649 341 KPLRVCPSKQQ 351 (481)
T ss_pred ceEEEEEcccc
Confidence 99999986443
No 32
>KOG0149 consensus Predicted RNA-binding protein SEB4 (RRM superfamily) [General function prediction only]
Probab=99.06 E-value=1.9e-10 Score=118.85 Aligned_cols=77 Identities=18% Similarity=0.392 Sum_probs=66.9
Q ss_pred ccCeEEEeCCCCCCChhHHHHHHHhhccCcceeEEEEeecCCCcccccCCCceEEEEEeCCHHHHHHHHHHhCCCccCCc
Q 003574 103 QRNLVYIVGLPLNLGDEDLLQRREYFGQYGKVLKVSMSRTAAGVIQQFPNNTCSVYITYSKEEEAVRCIQSVHGFVLEGK 182 (810)
Q Consensus 103 QkNLVYV~GLP~~iaEEDLLr~~EyFGQYGkI~KIvInrdk~g~~~q~~~~~gsAYVTFs~~EDA~rAI~aLDG~~LDGR 182 (810)
.-..|||+||+|+..+|+| ++||.|||.|++.+|..|+.++ +.+|++||||.+.|.|.+|.+.-+ -+||||
T Consensus 11 ~~TKifVggL~w~T~~~~l---~~yFeqfGeI~eavvitd~~t~-----rskGyGfVTf~d~~aa~rAc~dp~-piIdGR 81 (247)
T KOG0149|consen 11 TFTKIFVGGLAWETHKETL---RRYFEQFGEIVEAVVITDKNTG-----RSKGYGFVTFRDAEAATRACKDPN-PIIDGR 81 (247)
T ss_pred eEEEEEEcCcccccchHHH---HHHHHHhCceEEEEEEeccCCc-----cccceeeEEeecHHHHHHHhcCCC-Cccccc
Confidence 3467999999999999999 8999999999999999998776 457789999999999999987543 378999
Q ss_pred EEEEee
Q 003574 183 SLKACF 188 (810)
Q Consensus 183 ~LRASf 188 (810)
+-.|.+
T Consensus 82 ~aNcnl 87 (247)
T KOG0149|consen 82 KANCNL 87 (247)
T ss_pred ccccch
Confidence 988776
No 33
>KOG0121 consensus Nuclear cap-binding protein complex, subunit CBP20 (RRM superfamily) [RNA processing and modification]
Probab=99.04 E-value=3e-10 Score=109.08 Aligned_cols=78 Identities=15% Similarity=0.338 Sum_probs=72.5
Q ss_pred ccCeEEEeCCCCCCChhHHHHHHHhhccCcceeEEEEeecCCCcccccCCCceEEEEEeCCHHHHHHHHHHhCCCccCCc
Q 003574 103 QRNLVYIVGLPLNLGDEDLLQRREYFGQYGKVLKVSMSRTAAGVIQQFPNNTCSVYITYSKEEEAVRCIQSVHGFVLEGK 182 (810)
Q Consensus 103 QkNLVYV~GLP~~iaEEDLLr~~EyFGQYGkI~KIvInrdk~g~~~q~~~~~gsAYVTFs~~EDA~rAI~aLDG~~LDGR 182 (810)
+.++|||+||.+-++||+| +|+|++-|.|.+|+|-.++... .+.|+.||.|-..+||+.|++.++|+.||.|
T Consensus 35 ~S~tvyVgNlSfyttEEqi---yELFs~cG~irriiMGLdr~kk-----tpCGFCFVeyy~~~dA~~AlryisgtrLddr 106 (153)
T KOG0121|consen 35 KSCTVYVGNLSFYTTEEQI---YELFSKCGDIRRIIMGLDRFKK-----TPCGFCFVEYYSRDDAEDALRYISGTRLDDR 106 (153)
T ss_pred hcceEEEeeeeeeecHHHH---HHHHHhccchheeEeccccCCc-----CccceEEEEEecchhHHHHHHHhccCccccc
Confidence 5789999999999999999 9999999999999998877654 3678899999999999999999999999999
Q ss_pred EEEEee
Q 003574 183 SLKACF 188 (810)
Q Consensus 183 ~LRASf 188 (810)
+|++.|
T Consensus 107 ~ir~D~ 112 (153)
T KOG0121|consen 107 PIRIDW 112 (153)
T ss_pred ceeeec
Confidence 999987
No 34
>PLN03213 repressor of silencing 3; Provisional
Probab=99.04 E-value=4e-10 Score=125.28 Aligned_cols=79 Identities=24% Similarity=0.343 Sum_probs=71.1
Q ss_pred CeEEEeCCCCCCChhHHHHHHHhhccCcceeEEEEeecCCCcccccCCCceEEEEEeCCH--HHHHHHHHHhCCCccCCc
Q 003574 105 NLVYIVGLPLNLGDEDLLQRREYFGQYGKVLKVSMSRTAAGVIQQFPNNTCSVYITYSKE--EEAVRCIQSVHGFVLEGK 182 (810)
Q Consensus 105 NLVYV~GLP~~iaEEDLLr~~EyFGQYGkI~KIvInrdk~g~~~q~~~~~gsAYVTFs~~--EDA~rAI~aLDG~~LDGR 182 (810)
-.||||||++.++++|| ...|++||.|..|.|.|.+ + +|+|||+|... .++.+||..|||..+.||
T Consensus 11 MRIYVGNLSydVTEDDL---ravFSeFGsVkdVEIpRET--G-------RGFAFVEMssdddaEeeKAISaLNGAEWKGR 78 (759)
T PLN03213 11 VRLHVGGLGESVGRDDL---LKIFSPMGTVDAVEFVRTK--G-------RSFAYIDFSPSSTNSLTKLFSTYNGCVWKGG 78 (759)
T ss_pred eEEEEeCCCCCCCHHHH---HHHHHhcCCeeEEEEeccc--C-------CceEEEEecCCcHHHHHHHHHHhcCCeecCc
Confidence 56899999999999999 8999999999999998432 1 57899999987 789999999999999999
Q ss_pred EEEEeecCCCCcc
Q 003574 183 SLKACFGTTKYCH 195 (810)
Q Consensus 183 ~LRASfGTTKYCs 195 (810)
.|||.-|...|=.
T Consensus 79 ~LKVNKAKP~YLe 91 (759)
T PLN03213 79 RLRLEKAKEHYLA 91 (759)
T ss_pred eeEEeeccHHHHH
Confidence 9999999888743
No 35
>TIGR01622 SF-CC1 splicing factor, CC1-like family. A homologous gene from Plasmodium falciparum was identified in the course of the analysis of that genome at TIGR and was included in the model.
Probab=99.02 E-value=9.5e-10 Score=119.63 Aligned_cols=118 Identities=19% Similarity=0.296 Sum_probs=87.9
Q ss_pred ccCeEEEeCCCCCCChhHHHHHHHhhccCcceeEEEEeecCCCcccccCCCceEEEEEeCCHHHHHHHHHHhCCCccCCc
Q 003574 103 QRNLVYIVGLPLNLGDEDLLQRREYFGQYGKVLKVSMSRTAAGVIQQFPNNTCSVYITYSKEEEAVRCIQSVHGFVLEGK 182 (810)
Q Consensus 103 QkNLVYV~GLP~~iaEEDLLr~~EyFGQYGkI~KIvInrdk~g~~~q~~~~~gsAYVTFs~~EDA~rAI~aLDG~~LDGR 182 (810)
....|||+|||..+++++| +++|++||+|..|.|.+++.++ ..+|+|||+|.+.++|.+||. |+|..+.|+
T Consensus 88 ~~~~l~V~nlp~~~~~~~l---~~~F~~~G~v~~v~i~~d~~~~-----~skg~afVeF~~~e~A~~Al~-l~g~~~~g~ 158 (457)
T TIGR01622 88 DDRTVFVLQLALKARERDL---YEFFSKVGKVRDVQCIKDRNSR-----RSKGVAYVEFYDVESVIKALA-LTGQMLLGR 158 (457)
T ss_pred CCcEEEEeCCCCCCCHHHH---HHHHHhcCCeeEEEEeecCCCC-----CcceEEEEEECCHHHHHHHHH-hCCCEECCe
Confidence 3567999999999999999 8999999999999999886554 357889999999999999996 999999999
Q ss_pred EEEEeecCCCCcccc--cCC--CCCCCCCCcccccCCCCCCCccHHHHHhhhcc
Q 003574 183 SLKACFGTTKYCHAW--LRN--VPCTNPDCLYLHEVGSQEDSFTKDEIISAYTR 232 (810)
Q Consensus 183 ~LRASfGTTKYCs~F--LRg--~~C~N~dC~YLHE~g~~~DsfTKeEm~s~~~~ 232 (810)
+|++.+...+.-..- ... ..-.+..++|+.-+. ...|.++|......
T Consensus 159 ~i~v~~~~~~~~~~~~~~~~~~~~~p~~~~l~v~nl~---~~~te~~l~~~f~~ 209 (457)
T TIGR01622 159 PIIVQSSQAEKNRAAKAATHQPGDIPNFLKLYVGNLH---FNITEQELRQIFEP 209 (457)
T ss_pred eeEEeecchhhhhhhhcccccCCCCCCCCEEEEcCCC---CCCCHHHHHHHHHh
Confidence 999987543321110 000 011223556665554 45788888775443
No 36
>smart00361 RRM_1 RNA recognition motif.
Probab=99.00 E-value=1.2e-09 Score=92.06 Aligned_cols=64 Identities=31% Similarity=0.550 Sum_probs=50.9
Q ss_pred hhHHHHHHHhhc----cCcceeEEE-EeecCCCcccccCCCceEEEEEeCCHHHHHHHHHHhCCCccCCcEEEEe
Q 003574 118 DEDLLQRREYFG----QYGKVLKVS-MSRTAAGVIQQFPNNTCSVYITYSKEEEAVRCIQSVHGFVLEGKSLKAC 187 (810)
Q Consensus 118 EEDLLr~~EyFG----QYGkI~KIv-Inrdk~g~~~q~~~~~gsAYVTFs~~EDA~rAI~aLDG~~LDGR~LRAS 187 (810)
+++| +++|. +||+|.+|. |..++.+. ++.++|+|||+|.+.++|.+||..|||..++||+|+|+
T Consensus 2 ~~~l---~~~~~~~~~~fG~v~~v~~v~~~~~~~---~~~~rG~~fV~f~~~~dA~~A~~~l~g~~~~gr~l~~~ 70 (70)
T smart00361 2 DEDF---EREFSEEEEYFGEVGKINKIYIDNVGY---ENHKRGNVYITFERSEDAARAIVDLNGRYFDGRTVKAE 70 (70)
T ss_pred chhH---HHHHHHHHHhcCCeeEEEEEEeCCCCC---CCCCcEEEEEEECCHHHHHHHHHHhCCCEECCEEEEeC
Confidence 3556 67888 999999985 55444321 12457789999999999999999999999999999974
No 37
>TIGR01648 hnRNP-R-Q heterogeneous nuclear ribonucleoprotein R, Q family. Sequences in this subfamily include the human heterogeneous nuclear ribonucleoproteins (hnRNP) R, Q and APOBEC-1 complementation factor (aka APOBEC-1 stimulating protein). These proteins contain three RNA recognition domains (rrm: pfam00076) and a somewhat variable C-terminal domain.
Probab=98.99 E-value=9.2e-10 Score=126.18 Aligned_cols=102 Identities=19% Similarity=0.493 Sum_probs=83.6
Q ss_pred ccCeEEEeCCCCCCChhHHHHHHHhhccCcceeEEEEeecCCCcccccCCCceEEEEEeCCHHHHHHHHHHhCCCccC-C
Q 003574 103 QRNLVYIVGLPLNLGDEDLLQRREYFGQYGKVLKVSMSRTAAGVIQQFPNNTCSVYITYSKEEEAVRCIQSVHGFVLE-G 181 (810)
Q Consensus 103 QkNLVYV~GLP~~iaEEDLLr~~EyFGQYGkI~KIvInrdk~g~~~q~~~~~gsAYVTFs~~EDA~rAI~aLDG~~LD-G 181 (810)
+...|||++||+++++++| .++|.+||.|.+|+|.++..+ ..+++|||+|.+.|+|.+||..|||..+. |
T Consensus 57 ~~~~lFVgnLp~~~tEd~L---~~~F~~~G~I~~vrl~~D~sG------~sRGfaFV~F~~~e~A~~Ai~~lng~~i~~G 127 (578)
T TIGR01648 57 RGCEVFVGKIPRDLYEDEL---VPLFEKAGPIYELRLMMDFSG------QNRGYAFVTFCGKEEAKEAVKLLNNYEIRPG 127 (578)
T ss_pred CCCEEEeCCCCCCCCHHHH---HHHHHhhCCEEEEEEEECCCC------CccceEEEEeCCHHHHHHHHHHcCCCeecCC
Confidence 3578999999999999999 899999999999999998443 25678999999999999999999999885 8
Q ss_pred cEEEEeecCCCCcccccCCCCCCCCCCcccccCCCCCCCccHHHHHhhh
Q 003574 182 KSLKACFGTTKYCHAWLRNVPCTNPDCLYLHEVGSQEDSFTKDEIISAY 230 (810)
Q Consensus 182 R~LRASfGTTKYCs~FLRg~~C~N~dC~YLHE~g~~~DsfTKeEm~s~~ 230 (810)
|.|.+..... -|.-|++|.+ ...|++||....
T Consensus 128 r~l~V~~S~~-~~rLFVgNLP----------------~~~TeeeL~eeF 159 (578)
T TIGR01648 128 RLLGVCISVD-NCRLFVGGIP----------------KNKKREEILEEF 159 (578)
T ss_pred cccccccccc-CceeEeecCC----------------cchhhHHHHHHh
Confidence 9998887654 3566666644 246777776643
No 38
>PLN03121 nucleic acid binding protein; Provisional
Probab=98.98 E-value=1.6e-09 Score=112.78 Aligned_cols=75 Identities=13% Similarity=0.278 Sum_probs=67.0
Q ss_pred cCeEEEeCCCCCCChhHHHHHHHhhccCcceeEEEEeecCCCcccccCCCceEEEEEeCCHHHHHHHHHHhCCCccCCcE
Q 003574 104 RNLVYIVGLPLNLGDEDLLQRREYFGQYGKVLKVSMSRTAAGVIQQFPNNTCSVYITYSKEEEAVRCIQSVHGFVLEGKS 183 (810)
Q Consensus 104 kNLVYV~GLP~~iaEEDLLr~~EyFGQYGkI~KIvInrdk~g~~~q~~~~~gsAYVTFs~~EDA~rAI~aLDG~~LDGR~ 183 (810)
...|||+||++.+++++| +++|++||+|..|.|.++..+ +++|||+|.++++|..|| .|+|..|.|+.
T Consensus 5 g~TV~V~NLS~~tTE~dL---refFS~~G~I~~V~I~~D~et--------~gfAfVtF~d~~aaetAl-lLnGa~l~d~~ 72 (243)
T PLN03121 5 GYTAEVTNLSPKATEKDV---YDFFSHCGAIEHVEIIRSGEY--------ACTAYVTFKDAYALETAV-LLSGATIVDQR 72 (243)
T ss_pred ceEEEEecCCCCCCHHHH---HHHHHhcCCeEEEEEecCCCc--------ceEEEEEECCHHHHHHHH-hcCCCeeCCce
Confidence 458999999999999999 999999999999999987432 458999999999999998 59999999999
Q ss_pred EEEeecC
Q 003574 184 LKACFGT 190 (810)
Q Consensus 184 LRASfGT 190 (810)
|.+.-..
T Consensus 73 I~It~~~ 79 (243)
T PLN03121 73 VCITRWG 79 (243)
T ss_pred EEEEeCc
Confidence 9988544
No 39
>KOG0117 consensus Heterogeneous nuclear ribonucleoprotein R (RRM superfamily) [RNA processing and modification]
Probab=98.96 E-value=1.7e-09 Score=119.31 Aligned_cols=106 Identities=21% Similarity=0.446 Sum_probs=92.1
Q ss_pred cccccCeEEEeCCCCCCChhHHHHHHHhhccCcceeEEEEeecCCCcccccCCCceEEEEEeCCHHHHHHHHHHhCCCcc
Q 003574 100 RVIQRNLVYIVGLPLNLGDEDLLQRREYFGQYGKVLKVSMSRTAAGVIQQFPNNTCSVYITYSKEEEAVRCIQSVHGFVL 179 (810)
Q Consensus 100 RVIQkNLVYV~GLP~~iaEEDLLr~~EyFGQYGkI~KIvInrdk~g~~~q~~~~~gsAYVTFs~~EDA~rAI~aLDG~~L 179 (810)
+--+..-|||++||.++.|+|| ..+|++.|+|-.++|.+++..+ ..+|+|||||.++++|++||+.||+.+|
T Consensus 79 ~p~~G~EVfvGkIPrD~~EdeL---vplfEkiG~I~elRLMmD~~sG-----~nRGYAFVtf~~Ke~Aq~Aik~lnn~Ei 150 (506)
T KOG0117|consen 79 PPPRGCEVFVGKIPRDVFEDEL---VPLFEKIGKIYELRLMMDPFSG-----DNRGYAFVTFCTKEEAQEAIKELNNYEI 150 (506)
T ss_pred CCCCCceEEecCCCccccchhh---HHHHHhccceeeEEEeecccCC-----CCcceEEEEeecHHHHHHHHHHhhCccc
Confidence 4467789999999999999999 8999999999999999996654 3578999999999999999999999988
Q ss_pred -CCcEEEEeecCCCCcccccCCCCCCCCCCcccccCCCCCCCccHHHHHhhh
Q 003574 180 -EGKSLKACFGTTKYCHAWLRNVPCTNPDCLYLHEVGSQEDSFTKDEIISAY 230 (810)
Q Consensus 180 -DGR~LRASfGTTKYCs~FLRg~~C~N~dC~YLHE~g~~~DsfTKeEm~s~~ 230 (810)
-||.|+|+...++ |.-|+-+.+- .-+||||....
T Consensus 151 r~GK~igvc~Svan-~RLFiG~IPK----------------~k~keeIlee~ 185 (506)
T KOG0117|consen 151 RPGKLLGVCVSVAN-CRLFIGNIPK----------------TKKKEEILEEM 185 (506)
T ss_pred cCCCEeEEEEeeec-ceeEeccCCc----------------cccHHHHHHHH
Confidence 5999999987666 7889988885 45788887643
No 40
>KOG0126 consensus Predicted RNA-binding protein (RRM superfamily) [General function prediction only]
Probab=98.94 E-value=2.1e-10 Score=115.30 Aligned_cols=77 Identities=21% Similarity=0.530 Sum_probs=70.8
Q ss_pred cCeEEEeCCCCCCChhHHHHHHHhhccCcceeEEEEeecCCCcccccCCCceEEEEEeCCHHHHHHHHHHhCCCccCCcE
Q 003574 104 RNLVYIVGLPLNLGDEDLLQRREYFGQYGKVLKVSMSRTAAGVIQQFPNNTCSVYITYSKEEEAVRCIQSVHGFVLEGKS 183 (810)
Q Consensus 104 kNLVYV~GLP~~iaEEDLLr~~EyFGQYGkI~KIvInrdk~g~~~q~~~~~gsAYVTFs~~EDA~rAI~aLDG~~LDGR~ 183 (810)
.--|||+|||+.++|.||| -.|+|||.|+.|.+.|++.++ ...|+||..|++......|+..|||..|.||.
T Consensus 35 sA~Iyiggl~~~LtEgDil---~VFSqyGe~vdinLiRDk~TG-----KSKGFaFLcYEDQRSTILAVDN~NGiki~gRt 106 (219)
T KOG0126|consen 35 SAYIYIGGLPYELTEGDIL---CVFSQYGEIVDINLIRDKKTG-----KSKGFAFLCYEDQRSTILAVDNLNGIKILGRT 106 (219)
T ss_pred ceEEEECCCcccccCCcEE---EEeeccCceEEEEEEecCCCC-----cccceEEEEecCccceEEEEeccCCceeccee
Confidence 3469999999999999996 899999999999999998876 35678999999999999999999999999999
Q ss_pred EEEee
Q 003574 184 LKACF 188 (810)
Q Consensus 184 LRASf 188 (810)
|||..
T Consensus 107 irVDH 111 (219)
T KOG0126|consen 107 IRVDH 111 (219)
T ss_pred EEeee
Confidence 99984
No 41
>KOG0130 consensus RNA-binding protein RBM8/Tsunagi (RRM superfamily) [General function prediction only]
Probab=98.94 E-value=1e-09 Score=106.32 Aligned_cols=86 Identities=16% Similarity=0.335 Sum_probs=78.3
Q ss_pred cccccccCeEEEeCCCCCCChhHHHHHHHhhccCcceeEEEEeecCCCcccccCCCceEEEEEeCCHHHHHHHHHHhCCC
Q 003574 98 SVRVIQRNLVYIVGLPLNLGDEDLLQRREYFGQYGKVLKVSMSRTAAGVIQQFPNNTCSVYITYSKEEEAVRCIQSVHGF 177 (810)
Q Consensus 98 nvRVIQkNLVYV~GLP~~iaEEDLLr~~EyFGQYGkI~KIvInrdk~g~~~q~~~~~gsAYVTFs~~EDA~rAI~aLDG~ 177 (810)
..|.|....|||.|+-+..++|++ .+.|+-||+|+.|.++.++.++ --+|+|.|.|++.++|..||.++||.
T Consensus 66 PqrSVEGwIi~VtgvHeEatEedi---~d~F~dyGeiKNihLNLDRRtG-----y~KGYaLvEYet~keAq~A~~~~Ng~ 137 (170)
T KOG0130|consen 66 PQRSVEGWIIFVTGVHEEATEEDI---HDKFADYGEIKNIHLNLDRRTG-----YVKGYALVEYETLKEAQAAIDALNGA 137 (170)
T ss_pred CccceeeEEEEEeccCcchhHHHH---HHHHhhcccccceeeccccccc-----cccceeeeehHhHHHHHHHHHhccch
Confidence 567888899999999999999999 9999999999999999887665 24678999999999999999999999
Q ss_pred ccCCcEEEEeecCC
Q 003574 178 VLEGKSLKACFGTT 191 (810)
Q Consensus 178 ~LDGR~LRASfGTT 191 (810)
.|-|..|.|.|...
T Consensus 138 ~ll~q~v~VDw~Fv 151 (170)
T KOG0130|consen 138 ELLGQNVSVDWCFV 151 (170)
T ss_pred hhhCCceeEEEEEe
Confidence 99999999999543
No 42
>TIGR01648 hnRNP-R-Q heterogeneous nuclear ribonucleoprotein R, Q family. Sequences in this subfamily include the human heterogeneous nuclear ribonucleoproteins (hnRNP) R, Q and APOBEC-1 complementation factor (aka APOBEC-1 stimulating protein). These proteins contain three RNA recognition domains (rrm: pfam00076) and a somewhat variable C-terminal domain.
Probab=98.93 E-value=2.7e-09 Score=122.37 Aligned_cols=73 Identities=22% Similarity=0.453 Sum_probs=67.0
Q ss_pred CeEEEeCCCCCCChhHHHHHHHhhccC--cceeEEEEeecCCCcccccCCCceEEEEEeCCHHHHHHHHHHhCCCccCCc
Q 003574 105 NLVYIVGLPLNLGDEDLLQRREYFGQY--GKVLKVSMSRTAAGVIQQFPNNTCSVYITYSKEEEAVRCIQSVHGFVLEGK 182 (810)
Q Consensus 105 NLVYV~GLP~~iaEEDLLr~~EyFGQY--GkI~KIvInrdk~g~~~q~~~~~gsAYVTFs~~EDA~rAI~aLDG~~LDGR 182 (810)
..|||+||++.+++|+| +++|++| |+|.+|.+.+ ++|||+|.+.++|.+||++|||..|+|+
T Consensus 234 k~LfVgNL~~~~tee~L---~~~F~~f~~G~I~rV~~~r-------------gfAFVeF~s~e~A~kAi~~lnG~~i~Gr 297 (578)
T TIGR01648 234 KILYVRNLMTTTTEEII---EKSFSEFKPGKVERVKKIR-------------DYAFVHFEDREDAVKAMDELNGKELEGS 297 (578)
T ss_pred cEEEEeCCCCCCCHHHH---HHHHHhcCCCceEEEEeec-------------CeEEEEeCCHHHHHHHHHHhCCCEECCE
Confidence 57999999999999999 8999999 9999997653 3799999999999999999999999999
Q ss_pred EEEEeecCCCC
Q 003574 183 SLKACFGTTKY 193 (810)
Q Consensus 183 ~LRASfGTTKY 193 (810)
.|+|+|++.+-
T Consensus 298 ~I~V~~Akp~~ 308 (578)
T TIGR01648 298 EIEVTLAKPVD 308 (578)
T ss_pred EEEEEEccCCC
Confidence 99999997653
No 43
>KOG4207 consensus Predicted splicing factor, SR protein superfamily [RNA processing and modification]
Probab=98.93 E-value=9e-10 Score=112.52 Aligned_cols=77 Identities=21% Similarity=0.420 Sum_probs=70.7
Q ss_pred CeEEEeCCCCCCChhHHHHHHHhhccCcceeEEEEeecCCCcccccCCCceEEEEEeCCHHHHHHHHHHhCCCccCCcEE
Q 003574 105 NLVYIVGLPLNLGDEDLLQRREYFGQYGKVLKVSMSRTAAGVIQQFPNNTCSVYITYSKEEEAVRCIQSVHGFVLEGKSL 184 (810)
Q Consensus 105 NLVYV~GLP~~iaEEDLLr~~EyFGQYGkI~KIvInrdk~g~~~q~~~~~gsAYVTFs~~EDA~rAI~aLDG~~LDGR~L 184 (810)
..|-|-||.+..+.++| +..|.+||+|-+|.|.++..+. .++|+|||.|..+.||+.|+++|||.+||||.|
T Consensus 14 ~SLkVdNLTyRTspd~L---rrvFekYG~vgDVyIPrdr~Tr-----~sRgFaFVrf~~k~daedA~damDG~~ldgRel 85 (256)
T KOG4207|consen 14 TSLKVDNLTYRTSPDDL---RRVFEKYGRVGDVYIPRDRYTR-----QSRGFAFVRFHDKRDAEDALDAMDGAVLDGREL 85 (256)
T ss_pred eeEEecceeccCCHHHH---HHHHHHhCcccceecccccccc-----cccceeEEEeeecchHHHHHHhhcceeecccee
Confidence 45778999999999898 8999999999999999998765 468899999999999999999999999999999
Q ss_pred EEeec
Q 003574 185 KACFG 189 (810)
Q Consensus 185 RASfG 189 (810)
+|.++
T Consensus 86 rVq~a 90 (256)
T KOG4207|consen 86 RVQMA 90 (256)
T ss_pred eehhh
Confidence 99875
No 44
>KOG0145 consensus RNA-binding protein ELAV/HU (RRM superfamily) [RNA processing and modification]
Probab=98.89 E-value=5.2e-09 Score=109.86 Aligned_cols=81 Identities=26% Similarity=0.430 Sum_probs=72.1
Q ss_pred cCeEEEeCCCCCCChhHHHHHHHhhccCcceeEEEEeecCCCcccccCCCceEEEEEeCCHHHHHHHHHHhCCCccCCcE
Q 003574 104 RNLVYIVGLPLNLGDEDLLQRREYFGQYGKVLKVSMSRTAAGVIQQFPNNTCSVYITYSKEEEAVRCIQSVHGFVLEGKS 183 (810)
Q Consensus 104 kNLVYV~GLP~~iaEEDLLr~~EyFGQYGkI~KIvInrdk~g~~~q~~~~~gsAYVTFs~~EDA~rAI~aLDG~~LDGR~ 183 (810)
...+||.+|.++. +|.+| +++||+||.|..|.|.|+..+. .=+|++|||+.+-+||..||..|||..+++|+
T Consensus 278 g~ciFvYNLspd~-de~~L--WQlFgpFGAv~nVKvirD~ttn-----kCKGfgFVtMtNYdEAamAi~sLNGy~lg~rv 349 (360)
T KOG0145|consen 278 GWCIFVYNLSPDA-DESIL--WQLFGPFGAVTNVKVIRDFTTN-----KCKGFGFVTMTNYDEAAMAIASLNGYRLGDRV 349 (360)
T ss_pred eeEEEEEecCCCc-hHhHH--HHHhCcccceeeEEEEecCCcc-----cccceeEEEecchHHHHHHHHHhcCccccceE
Confidence 4569999999996 55777 9999999999999999997764 23567899999999999999999999999999
Q ss_pred EEEeecCCC
Q 003574 184 LKACFGTTK 192 (810)
Q Consensus 184 LRASfGTTK 192 (810)
|.|+|-|.|
T Consensus 350 LQVsFKtnk 358 (360)
T KOG0145|consen 350 LQVSFKTNK 358 (360)
T ss_pred EEEEEecCC
Confidence 999999887
No 45
>KOG0131 consensus Splicing factor 3b, subunit 4 [RNA processing and modification]
Probab=98.88 E-value=2e-09 Score=108.20 Aligned_cols=81 Identities=20% Similarity=0.272 Sum_probs=73.1
Q ss_pred cccCeEEEeCCCCCCChhHHHHHHHhhccCcceeEEEEeecCCCcccccCCCceEEEEEeCCHHHHHHHHHHhCCCccCC
Q 003574 102 IQRNLVYIVGLPLNLGDEDLLQRREYFGQYGKVLKVSMSRTAAGVIQQFPNNTCSVYITYSKEEEAVRCIQSVHGFVLEG 181 (810)
Q Consensus 102 IQkNLVYV~GLP~~iaEEDLLr~~EyFGQYGkI~KIvInrdk~g~~~q~~~~~gsAYVTFs~~EDA~rAI~aLDG~~LDG 181 (810)
-|..+|||+||+.+++++-| +|+|.|-|+|+.|.|.+++.+. ...|++||.|.++|||.-||+-||+..|-|
T Consensus 7 nqd~tiyvgnld~kvs~~~l---~EL~iqagpVv~i~iPkDrv~~-----~~qGygF~Ef~~eedadYAikiln~VkLYg 78 (203)
T KOG0131|consen 7 NQDATLYVGNLDEKVSEELL---YELFIQAGPVVNLHIPKDRVTQ-----KHQGYGFAEFRTEEDADYAIKILNMVKLYG 78 (203)
T ss_pred CCCceEEEecCCHHHHHHHH---HHHHHhcCceeeeecchhhhcc-----cccceeEEEEechhhhHHHHHHHHHHHhcC
Confidence 37789999999999988555 9999999999999999998765 245689999999999999999999999999
Q ss_pred cEEEEeecC
Q 003574 182 KSLKACFGT 190 (810)
Q Consensus 182 R~LRASfGT 190 (810)
|+|||.-+.
T Consensus 79 rpIrv~kas 87 (203)
T KOG0131|consen 79 RPIRVNKAS 87 (203)
T ss_pred ceeEEEecc
Confidence 999999877
No 46
>KOG0105 consensus Alternative splicing factor ASF/SF2 (RRM superfamily) [RNA processing and modification]
Probab=98.88 E-value=2.3e-09 Score=108.22 Aligned_cols=78 Identities=15% Similarity=0.409 Sum_probs=69.7
Q ss_pred CeEEEeCCCCCCChhHHHHHHHhhccCcceeEEEEeecCCCcccccCCCceEEEEEeCCHHHHHHHHHHhCCCccCCcEE
Q 003574 105 NLVYIVGLPLNLGDEDLLQRREYFGQYGKVLKVSMSRTAAGVIQQFPNNTCSVYITYSKEEEAVRCIQSVHGFVLEGKSL 184 (810)
Q Consensus 105 NLVYV~GLP~~iaEEDLLr~~EyFGQYGkI~KIvInrdk~g~~~q~~~~~gsAYVTFs~~EDA~rAI~aLDG~~LDGR~L 184 (810)
..|||+|||..|.+.|| .++|-+||+|..|.+..... +-.+|||.|++..||+.||..-||.-+||..|
T Consensus 7 ~~iyvGNLP~diRekei---eDlFyKyg~i~~ieLK~r~g--------~ppfafVeFEd~RDAeDAiygRdGYdydg~rL 75 (241)
T KOG0105|consen 7 RRIYVGNLPGDIREKEI---EDLFYKYGRIREIELKNRPG--------PPPFAFVEFEDPRDAEDAIYGRDGYDYDGCRL 75 (241)
T ss_pred ceEEecCCCcchhhccH---HHHHhhhcceEEEEeccCCC--------CCCeeEEEecCccchhhhhhcccccccCcceE
Confidence 46899999999999999 99999999999999865432 23589999999999999999999999999999
Q ss_pred EEeecCCCC
Q 003574 185 KACFGTTKY 193 (810)
Q Consensus 185 RASfGTTKY 193 (810)
||.|..+--
T Consensus 76 RVEfprggr 84 (241)
T KOG0105|consen 76 RVEFPRGGR 84 (241)
T ss_pred EEEeccCCC
Confidence 999977654
No 47
>TIGR01649 hnRNP-L_PTB hnRNP-L/PTB/hephaestus splicing factor family. Included in this family of heterogeneous ribonucleoproteins are PTB (polypyrimidine tract binding protein ) and hnRNP-L. These proteins contain four RNA recognition motifs (rrm: pfam00067).
Probab=98.86 E-value=6.3e-09 Score=116.02 Aligned_cols=79 Identities=23% Similarity=0.394 Sum_probs=68.9
Q ss_pred cCeEEEeCCCCCCChhHHHHHHHhhccCcc--eeEEEEeecCCCcccccCCCceEEEEEeCCHHHHHHHHHHhCCCccCC
Q 003574 104 RNLVYIVGLPLNLGDEDLLQRREYFGQYGK--VLKVSMSRTAAGVIQQFPNNTCSVYITYSKEEEAVRCIQSVHGFVLEG 181 (810)
Q Consensus 104 kNLVYV~GLP~~iaEEDLLr~~EyFGQYGk--I~KIvInrdk~g~~~q~~~~~gsAYVTFs~~EDA~rAI~aLDG~~LDG 181 (810)
...|||.|||..+++|+| +++|.+||. |.+|+|...... ++++|||.|.+.++|.+||..|||..|+|
T Consensus 394 s~~L~v~NLp~~~tee~L---~~lF~~~G~~~i~~ik~~~~~~~-------~~~~gfVeF~~~e~A~~Al~~ln~~~l~~ 463 (481)
T TIGR01649 394 SATLHLSNIPLSVSEEDL---KELFAENGVHKVKKFKFFPKDNE-------RSKMGLLEWESVEDAVEALIALNHHQLNE 463 (481)
T ss_pred CcEEEEecCCCCCCHHHH---HHHHHhcCCccceEEEEecCCCC-------cceeEEEEcCCHHHHHHHHHHhcCCccCC
Confidence 357999999999999998 899999998 888888643321 35689999999999999999999999999
Q ss_pred cE------EEEeecCCC
Q 003574 182 KS------LKACFGTTK 192 (810)
Q Consensus 182 R~------LRASfGTTK 192 (810)
+. ||++|++++
T Consensus 464 ~~~~~~~~lkv~fs~~~ 480 (481)
T TIGR01649 464 PNGSAPYHLKVSFSTSR 480 (481)
T ss_pred CCCCccceEEEEeccCC
Confidence 85 999999875
No 48
>KOG0108 consensus mRNA cleavage and polyadenylation factor I complex, subunit RNA15 [RNA processing and modification]
Probab=98.85 E-value=4.5e-09 Score=117.17 Aligned_cols=80 Identities=20% Similarity=0.385 Sum_probs=74.9
Q ss_pred CeEEEeCCCCCCChhHHHHHHHhhccCcceeEEEEeecCCCcccccCCCceEEEEEeCCHHHHHHHHHHhCCCccCCcEE
Q 003574 105 NLVYIVGLPLNLGDEDLLQRREYFGQYGKVLKVSMSRTAAGVIQQFPNNTCSVYITYSKEEEAVRCIQSVHGFVLEGKSL 184 (810)
Q Consensus 105 NLVYV~GLP~~iaEEDLLr~~EyFGQYGkI~KIvInrdk~g~~~q~~~~~gsAYVTFs~~EDA~rAI~aLDG~~LDGR~L 184 (810)
..|||+|||+.+++|+| .++|+++|.|..++++.|+.++ .++|++|++|.+.++|.+||..|||..+.||+|
T Consensus 19 ~~v~vgnip~~~se~~l---~~~~~~~g~v~s~~~v~D~~tG-----~~~G~~f~~~~~~~~~~~a~~~lNg~~~~gr~l 90 (435)
T KOG0108|consen 19 SSVFVGNIPYEGSEEQL---LSIFSGVGPVLSFRLVYDRETG-----KPKGFGFCEFTDEETAERAIRNLNGAEFNGRKL 90 (435)
T ss_pred cceEecCCCCcccHHHH---HHHHhccCccceeeecccccCC-----CcCceeeEecCchhhHHHHHHhcCCcccCCceE
Confidence 78999999999999999 7999999999999999998876 467899999999999999999999999999999
Q ss_pred EEeecCCC
Q 003574 185 KACFGTTK 192 (810)
Q Consensus 185 RASfGTTK 192 (810)
||.|+...
T Consensus 91 ~v~~~~~~ 98 (435)
T KOG0108|consen 91 RVNYASNR 98 (435)
T ss_pred Eeeccccc
Confidence 99997654
No 49
>KOG0113 consensus U1 small nuclear ribonucleoprotein (RRM superfamily) [RNA processing and modification]
Probab=98.84 E-value=8.6e-09 Score=109.64 Aligned_cols=86 Identities=16% Similarity=0.429 Sum_probs=75.0
Q ss_pred CeEEEeCCCCCCChhHHHHHHHhhccCcceeEEEEeecCCCcccccCCCceEEEEEeCCHHHHHHHHHHhCCCccCCcEE
Q 003574 105 NLVYIVGLPLNLGDEDLLQRREYFGQYGKVLKVSMSRTAAGVIQQFPNNTCSVYITYSKEEEAVRCIQSVHGFVLEGKSL 184 (810)
Q Consensus 105 NLVYV~GLP~~iaEEDLLr~~EyFGQYGkI~KIvInrdk~g~~~q~~~~~gsAYVTFs~~EDA~rAI~aLDG~~LDGR~L 184 (810)
.+|||+-|++.+.|.+| +++|.+||+|++|+|+++..++ .++|+|||.|.++-|-..|.+..+|.+||||.|
T Consensus 102 ~TLFv~RLnydT~EskL---rreF~~YG~IkrirlV~d~vTg-----kskGYAFIeye~erdm~~AYK~adG~~Idgrri 173 (335)
T KOG0113|consen 102 KTLFVARLNYDTSESKL---RREFEKYGPIKRIRLVRDKVTG-----KSKGYAFIEYEHERDMKAAYKDADGIKIDGRRI 173 (335)
T ss_pred ceeeeeeccccccHHHH---HHHHHhcCcceeEEEeeecccC-----CccceEEEEeccHHHHHHHHHhccCceecCcEE
Confidence 47999999999998888 8999999999999999998765 468899999999999999999999999999999
Q ss_pred EEeecCCCCccccc
Q 003574 185 KACFGTTKYCHAWL 198 (810)
Q Consensus 185 RASfGTTKYCs~FL 198 (810)
-|.|-.-+-...||
T Consensus 174 ~VDvERgRTvkgW~ 187 (335)
T KOG0113|consen 174 LVDVERGRTVKGWL 187 (335)
T ss_pred EEEecccccccccc
Confidence 99984433333444
No 50
>KOG0144 consensus RNA-binding protein CUGBP1/BRUNO (RRM superfamily) [RNA processing and modification]
Probab=98.79 E-value=4.3e-09 Score=115.97 Aligned_cols=86 Identities=22% Similarity=0.473 Sum_probs=77.4
Q ss_pred cccccCeEEEeCCCCCCChhHHHHHHHhhccCcceeEEEEeecCCCcccccCCCceEEEEEeCCHHHHHHHHHHhCCC-c
Q 003574 100 RVIQRNLVYIVGLPLNLGDEDLLQRREYFGQYGKVLKVSMSRTAAGVIQQFPNNTCSVYITYSKEEEAVRCIQSVHGF-V 178 (810)
Q Consensus 100 RVIQkNLVYV~GLP~~iaEEDLLr~~EyFGQYGkI~KIvInrdk~g~~~q~~~~~gsAYVTFs~~EDA~rAI~aLDG~-~ 178 (810)
|++....+||+-|+.+.+|+|+ +|+|.+||.|.++.|.|+..+. .+|+|||+|..+|-|..||++|||. .
T Consensus 120 r~~~e~KLFvg~lsK~~te~ev---r~iFs~fG~Ied~~ilrd~~~~------sRGcaFV~fstke~A~~Aika~ng~~t 190 (510)
T KOG0144|consen 120 RIVEERKLFVGMLSKQCTENEV---REIFSRFGHIEDCYILRDPDGL------SRGCAFVKFSTKEMAVAAIKALNGTQT 190 (510)
T ss_pred ccccchhhhhhhccccccHHHH---HHHHHhhCccchhhheeccccc------ccceeEEEEehHHHHHHHHHhhcccee
Confidence 5677888999999999999999 9999999999999999987653 5778999999999999999999998 4
Q ss_pred cCC--cEEEEeecCCCCc
Q 003574 179 LEG--KSLKACFGTTKYC 194 (810)
Q Consensus 179 LDG--R~LRASfGTTKYC 194 (810)
+.| .+|.|-|+-||.-
T Consensus 191 meGcs~PLVVkFADtqkd 208 (510)
T KOG0144|consen 191 MEGCSQPLVVKFADTQKD 208 (510)
T ss_pred eccCCCceEEEecccCCC
Confidence 777 5799999999843
No 51
>KOG0127 consensus Nucleolar protein fibrillarin NOP77 (RRM superfamily) [RNA processing and modification]
Probab=98.76 E-value=1.5e-08 Score=114.07 Aligned_cols=80 Identities=19% Similarity=0.449 Sum_probs=74.0
Q ss_pred cCeEEEeCCCCCCChhHHHHHHHhhccCcceeEEEEeecCCCcccccCCCceEEEEEeCCHHHHHHHHHHhCCCccCCcE
Q 003574 104 RNLVYIVGLPLNLGDEDLLQRREYFGQYGKVLKVSMSRTAAGVIQQFPNNTCSVYITYSKEEEAVRCIQSVHGFVLEGKS 183 (810)
Q Consensus 104 kNLVYV~GLP~~iaEEDLLr~~EyFGQYGkI~KIvInrdk~g~~~q~~~~~gsAYVTFs~~EDA~rAI~aLDG~~LDGR~ 183 (810)
+..|.|.|||+.+.+++| .-+|++||+|..|+|++...+. -.|+|||+|....+|..||..+||..|+||+
T Consensus 117 k~rLIIRNLPf~~k~~dL---k~vFs~~G~V~Ei~IP~k~dgk------lcGFaFV~fk~~~dA~~Al~~~N~~~i~gR~ 187 (678)
T KOG0127|consen 117 KWRLIIRNLPFKCKKPDL---KNVFSNFGKVVEIVIPRKKDGK------LCGFAFVQFKEKKDAEKALEFFNGNKIDGRP 187 (678)
T ss_pred cceEEeecCCcccCcHHH---HHHHhhcceEEEEEcccCCCCC------ccceEEEEEeeHHHHHHHHHhccCceecCce
Confidence 678899999999999999 8999999999999999877664 2478999999999999999999999999999
Q ss_pred EEEeecCCC
Q 003574 184 LKACFGTTK 192 (810)
Q Consensus 184 LRASfGTTK 192 (810)
|-|.||..|
T Consensus 188 VAVDWAV~K 196 (678)
T KOG0127|consen 188 VAVDWAVDK 196 (678)
T ss_pred eEEeeeccc
Confidence 999999887
No 52
>KOG0127 consensus Nucleolar protein fibrillarin NOP77 (RRM superfamily) [RNA processing and modification]
Probab=98.73 E-value=2.5e-08 Score=112.37 Aligned_cols=115 Identities=22% Similarity=0.453 Sum_probs=91.8
Q ss_pred CeEEEeCCCCCCChhHHHHHHHhhccCcceeEEEEeecCCCcccccCCCceEEEEEeCCHHHHHHHHHHh-----CC-Cc
Q 003574 105 NLVYIVGLPLNLGDEDLLQRREYFGQYGKVLKVSMSRTAAGVIQQFPNNTCSVYITYSKEEEAVRCIQSV-----HG-FV 178 (810)
Q Consensus 105 NLVYV~GLP~~iaEEDLLr~~EyFGQYGkI~KIvInrdk~g~~~q~~~~~gsAYVTFs~~EDA~rAI~aL-----DG-~~ 178 (810)
.+|||.|||+..++|+| .+.|.|||+|.-+.|..++.++ .+.|.|||.|.+..+|..||.+. +| ..
T Consensus 293 ~tVFvRNL~fD~tEEel---~~~fskFG~v~ya~iV~~k~T~-----~skGtAFv~Fkt~~~~~~ci~~Aspa~e~g~~l 364 (678)
T KOG0127|consen 293 KTVFVRNLPFDTTEEEL---KEHFSKFGEVKYAIIVKDKDTG-----HSKGTAFVKFKTQIAAQNCIEAASPASEDGSVL 364 (678)
T ss_pred ceEEEecCCccccHHHH---HHHHHhhccceeEEEEeccCCC-----CcccceEEEeccHHHHHHHHHhcCccCCCceEE
Confidence 38999999999999999 9999999999999999888765 46788999999999999999998 55 67
Q ss_pred cCCcEEEEeecCCCCccccc-----CCCCCCCCCCcccccCCCCC------CCccHHHHHh
Q 003574 179 LEGKSLKACFGTTKYCHAWL-----RNVPCTNPDCLYLHEVGSQE------DSFTKDEIIS 228 (810)
Q Consensus 179 LDGR~LRASfGTTKYCs~FL-----Rg~~C~N~dC~YLHE~g~~~------DsfTKeEm~s 228 (810)
|+||.|+|..+.|+--+.=| +-++-. .-=+||--.|--. +.++.+||.-
T Consensus 365 l~GR~Lkv~~Av~RkeA~dmeqkk~~Kk~~g-krNLyLa~EG~I~~gt~aAeglS~~Dm~k 424 (678)
T KOG0127|consen 365 LDGRLLKVTLAVTRKEAADMEQKKKRKKPKG-KRNLYLAREGLIRDGTPAAEGLSATDMAK 424 (678)
T ss_pred EeccEEeeeeccchHHHHHHHHHhhhhccCC-ccceeeeccCccccCChhhcccchhhHHH
Confidence 99999999999998665533 222222 2356776655332 5788888875
No 53
>TIGR01642 U2AF_lg U2 snRNP auxilliary factor, large subunit, splicing factor. Members of this subfamily are found in plants, metazoa and fungi.
Probab=98.63 E-value=7.8e-08 Score=106.04 Aligned_cols=83 Identities=18% Similarity=0.348 Sum_probs=62.9
Q ss_pred cCeEEEeCCCCC--CC--------hhHHHHHHHhhccCcceeEEEEeecCCCcccccCCCceEEEEEeCCHHHHHHHHHH
Q 003574 104 RNLVYIVGLPLN--LG--------DEDLLQRREYFGQYGKVLKVSMSRTAAGVIQQFPNNTCSVYITYSKEEEAVRCIQS 173 (810)
Q Consensus 104 kNLVYV~GLP~~--ia--------EEDLLr~~EyFGQYGkI~KIvInrdk~g~~~q~~~~~gsAYVTFs~~EDA~rAI~a 173 (810)
...|+|.||... +. .|+| ++.|++||.|++|+|.+...... .....|+|||+|.+.++|.+||.+
T Consensus 409 s~v~~l~N~~~~~~l~~d~~~~~~~edl---~~~f~~~G~v~~v~i~~~~~~~~--~~~~~G~~fV~F~~~e~A~~A~~~ 483 (509)
T TIGR01642 409 TKVVQLTNLVTGDDLMDDEEYEEIYEDV---KTEFSKYGPLINIVIPRPNGDRN--STPGVGKVFLEYADVRSAEKAMEG 483 (509)
T ss_pred ceEEEeccCCchhHhcCcchHHHHHHHH---HHHHHhcCCeeEEEeeccCcCCC--cCCCcceEEEEECCHHHHHHHHHH
Confidence 356788888532 11 1345 79999999999999987532210 012346799999999999999999
Q ss_pred hCCCccCCcEEEEeecCC
Q 003574 174 VHGFVLEGKSLKACFGTT 191 (810)
Q Consensus 174 LDG~~LDGR~LRASfGTT 191 (810)
|||..|+||.|.|.|-..
T Consensus 484 lnGr~~~gr~v~~~~~~~ 501 (509)
T TIGR01642 484 MNGRKFNDRVVVAAFYGE 501 (509)
T ss_pred cCCCEECCeEEEEEEeCH
Confidence 999999999999998543
No 54
>KOG0145 consensus RNA-binding protein ELAV/HU (RRM superfamily) [RNA processing and modification]
Probab=98.61 E-value=8.5e-08 Score=100.95 Aligned_cols=110 Identities=18% Similarity=0.411 Sum_probs=86.9
Q ss_pred cCeEEEeCCCCCCChhHHHHHHHhhccCcceeEEEEeecCCCcccccCCCceEEEEEeCCHHHHHHHHHHhCCCccCCcE
Q 003574 104 RNLVYIVGLPLNLGDEDLLQRREYFGQYGKVLKVSMSRTAAGVIQQFPNNTCSVYITYSKEEEAVRCIQSVHGFVLEGKS 183 (810)
Q Consensus 104 kNLVYV~GLP~~iaEEDLLr~~EyFGQYGkI~KIvInrdk~g~~~q~~~~~gsAYVTFs~~EDA~rAI~aLDG~~LDGR~ 183 (810)
|..+.|--||..+++||+ +.+||..|+|..+.+.|++.++ ..-|++||.|.+++||++||..|||-.|..+.
T Consensus 41 kTNLIvNYLPQ~MTqdE~---rSLF~SiGeiEScKLvRDKitG-----qSLGYGFVNYv~p~DAe~AintlNGLrLQ~KT 112 (360)
T KOG0145|consen 41 KTNLIVNYLPQNMTQDEL---RSLFGSIGEIESCKLVRDKITG-----QSLGYGFVNYVRPKDAEKAINTLNGLRLQNKT 112 (360)
T ss_pred cceeeeeecccccCHHHH---HHHhhcccceeeeeeeeccccc-----cccccceeeecChHHHHHHHhhhcceeeccce
Confidence 445678889999999999 8999999999999999999876 24567899999999999999999999999999
Q ss_pred EEEeecCCCCcccccCCCCCCCCCCcccccCCCCCCCccHHHHHhhhcc
Q 003574 184 LKACFGTTKYCHAWLRNVPCTNPDCLYLHEVGSQEDSFTKDEIISAYTR 232 (810)
Q Consensus 184 LRASfGTTKYCs~FLRg~~C~N~dC~YLHE~g~~~DsfTKeEm~s~~~~ 232 (810)
|||+|+..-.- -+|+. =+|.--+. -+.|..||++...+
T Consensus 113 IKVSyARPSs~--~Ik~a------NLYvSGlP---ktMtqkelE~iFs~ 150 (360)
T KOG0145|consen 113 IKVSYARPSSD--SIKDA------NLYVSGLP---KTMTQKELEQIFSP 150 (360)
T ss_pred EEEEeccCChh--hhccc------ceEEecCC---ccchHHHHHHHHHH
Confidence 99999987532 23322 23433332 25677777775544
No 55
>KOG0117 consensus Heterogeneous nuclear ribonucleoprotein R (RRM superfamily) [RNA processing and modification]
Probab=98.59 E-value=7.1e-08 Score=106.93 Aligned_cols=72 Identities=22% Similarity=0.528 Sum_probs=66.2
Q ss_pred cCeEEEeCCCCCCChhHHHHHHHhhccCcceeEEEEeecCCCcccccCCCceEEEEEeCCHHHHHHHHHHhCCCccCCcE
Q 003574 104 RNLVYIVGLPLNLGDEDLLQRREYFGQYGKVLKVSMSRTAAGVIQQFPNNTCSVYITYSKEEEAVRCIQSVHGFVLEGKS 183 (810)
Q Consensus 104 kNLVYV~GLP~~iaEEDLLr~~EyFGQYGkI~KIvInrdk~g~~~q~~~~~gsAYVTFs~~EDA~rAI~aLDG~~LDGR~ 183 (810)
-..|||.||+..+++|.| ++.|.+||+|.+|+..+| +|||-|...++|.+|+..+||+.|+|..
T Consensus 259 VKvLYVRNL~~~tTeE~l---k~~F~~~G~veRVkk~rD-------------YaFVHf~eR~davkAm~~~ngkeldG~~ 322 (506)
T KOG0117|consen 259 VKVLYVRNLMESTTEETL---KKLFNEFGKVERVKKPRD-------------YAFVHFAEREDAVKAMKETNGKELDGSP 322 (506)
T ss_pred eeeeeeeccchhhhHHHH---HHHHHhccceEEeecccc-------------eeEEeecchHHHHHHHHHhcCceecCce
Confidence 346899999999999888 899999999999998754 6899999999999999999999999999
Q ss_pred EEEeecCC
Q 003574 184 LKACFGTT 191 (810)
Q Consensus 184 LRASfGTT 191 (810)
|.|.+|..
T Consensus 323 iEvtLAKP 330 (506)
T KOG0117|consen 323 IEVTLAKP 330 (506)
T ss_pred EEEEecCC
Confidence 99999865
No 56
>KOG0132 consensus RNA polymerase II C-terminal domain-binding protein RA4, contains RPR and RRM domains [RNA processing and modification; Transcription]
Probab=98.56 E-value=1.1e-07 Score=110.49 Aligned_cols=108 Identities=17% Similarity=0.346 Sum_probs=87.9
Q ss_pred chhhhhcccccc----ccccCeEEEeCCCCCCChhHHHHHHHhhccCcceeEEEEeecCCCcccccCCCceEEEEEeCCH
Q 003574 89 SEGKKQQLSSVR----VIQRNLVYIVGLPLNLGDEDLLQRREYFGQYGKVLKVSMSRTAAGVIQQFPNNTCSVYITYSKE 164 (810)
Q Consensus 89 ~e~RK~~LanvR----VIQkNLVYV~GLP~~iaEEDLLr~~EyFGQYGkI~KIvInrdk~g~~~q~~~~~gsAYVTFs~~ 164 (810)
.+-|+.-|..|| .|...+|||+||+.++++.|| ..+|+.||.|..|.|+. ++++|||++.+.
T Consensus 402 reRr~kglP~I~pd~isV~SrTLwvG~i~k~v~e~dL---~~~feefGeiqSi~li~-----------~R~cAfI~M~~R 467 (894)
T KOG0132|consen 402 RERRKKGLPTIPPDHISVCSRTLWVGGIPKNVTEQDL---ANLFEEFGEIQSIILIP-----------PRGCAFIKMVRR 467 (894)
T ss_pred cccccccCCCCCCcceeEeeeeeeeccccchhhHHHH---HHHHHhcccceeEeecc-----------CCceeEEEEeeh
Confidence 344555777777 567788999999999999999 89999999999999974 356899999999
Q ss_pred HHHHHHHHHhCCCccCCcEEEEeecCCCCcccccCCCCCCCCCCcccccCCCCC
Q 003574 165 EEAVRCIQSVHGFVLEGKSLKACFGTTKYCHAWLRNVPCTNPDCLYLHEVGSQE 218 (810)
Q Consensus 165 EDA~rAI~aLDG~~LDGR~LRASfGTTKYCs~FLRg~~C~N~dC~YLHE~g~~~ 218 (810)
.||.+|+++|....+.++.||+.||..|=-.. +- .|.|-||+|=-.
T Consensus 468 qdA~kalqkl~n~kv~~k~Iki~Wa~g~G~ks----e~----k~~wD~~lGVt~ 513 (894)
T KOG0132|consen 468 QDAEKALQKLSNVKVADKTIKIAWAVGKGPKS----EY----KDYWDVELGVTY 513 (894)
T ss_pred hHHHHHHHHHhcccccceeeEEeeeccCCcch----hh----hhhhhcccCeeE
Confidence 99999999999999999999999987753221 11 266777776433
No 57
>KOG2068 consensus MOT2 transcription factor [Transcription]
Probab=98.55 E-value=3.6e-08 Score=106.18 Aligned_cols=55 Identities=44% Similarity=1.242 Sum_probs=49.9
Q ss_pred CCCCCcccCCCcCCCCccccCCCchhhhhhHhHhHhhhhhccccCCCCCCCCCCccccccc
Q 003574 7 KTCPLCAEEMDLTDQQLKPCKCGYEICVWCWHHIMDMAEKEETEGRCPACRSPYDKEKIVG 67 (810)
Q Consensus 7 ~~CPLC~EelD~tD~~F~PC~CGYQIC~fC~~rI~~~a~k~~~~grCPACRr~Yde~~i~~ 67 (810)
..||+|.|++|.+|..|.||+||+++|+||+..|.+ .+++||+||++|...+..+
T Consensus 250 ~s~p~~~~~~~~~d~~~lP~~~~~~~~l~~~~t~~~------~~~~~~~~rk~~~~~t~~s 304 (327)
T KOG2068|consen 250 PSCPICYEDLDLTDSNFLPCPCGFRLCLFCHKTISD------GDGRCPGCRKPYERNTKKS 304 (327)
T ss_pred CCCCCCCCcccccccccccccccccchhhhhhcccc------cCCCCCccCCccccCcccc
Confidence 689999999999999999999999999999999974 6899999999997766543
No 58
>KOG0144 consensus RNA-binding protein CUGBP1/BRUNO (RRM superfamily) [RNA processing and modification]
Probab=98.52 E-value=1.5e-07 Score=104.18 Aligned_cols=82 Identities=20% Similarity=0.441 Sum_probs=71.4
Q ss_pred eEEEeCCCCCCChhHHHHHHHhhccCcceeEEEEeecCCCcccccCCCceEEEEEeCCHHHHHHHHHHhCCC-ccCC--c
Q 003574 106 LVYIVGLPLNLGDEDLLQRREYFGQYGKVLKVSMSRTAAGVIQQFPNNTCSVYITYSKEEEAVRCIQSVHGF-VLEG--K 182 (810)
Q Consensus 106 LVYV~GLP~~iaEEDLLr~~EyFGQYGkI~KIvInrdk~g~~~q~~~~~gsAYVTFs~~EDA~rAI~aLDG~-~LDG--R 182 (810)
.+||+-||..++|+|| +++|.+||.|.+|.|.||+.++ ..++++||+|.+.+||.+||.+|++. .|.| .
T Consensus 36 KlfVgqIprt~sE~dl---r~lFe~yg~V~einl~kDk~t~-----~s~gcCFv~~~trk~a~~a~~Alhn~ktlpG~~~ 107 (510)
T KOG0144|consen 36 KLFVGQIPRTASEKDL---RELFEKYGNVYEINLIKDKSTG-----QSKGCCFVKYYTRKEADEAINALHNQKTLPGMHH 107 (510)
T ss_pred hheeccCCccccHHHH---HHHHHHhCceeEEEeecccccC-----cccceEEEEeccHHHHHHHHHHhhcccccCCCCc
Confidence 3799999999999999 8999999999999999999876 34667899999999999999999997 4666 6
Q ss_pred EEEEeecCCCCcc
Q 003574 183 SLKACFGTTKYCH 195 (810)
Q Consensus 183 ~LRASfGTTKYCs 195 (810)
+|.|.|+.+..-.
T Consensus 108 pvqvk~Ad~E~er 120 (510)
T KOG0144|consen 108 PVQVKYADGERER 120 (510)
T ss_pred ceeecccchhhhc
Confidence 7888888775443
No 59
>KOG0147 consensus Transcriptional coactivator CAPER (RRM superfamily) [Transcription]
Probab=98.51 E-value=1.2e-07 Score=107.06 Aligned_cols=79 Identities=24% Similarity=0.497 Sum_probs=71.6
Q ss_pred EEEeCCCCCCChhHHHHHHHhhccCcceeEEEEeecCCCcccccCCCceEEEEEeCCHHHHHHHHHHhCCCccCCcEEEE
Q 003574 107 VYIVGLPLNLGDEDLLQRREYFGQYGKVLKVSMSRTAAGVIQQFPNNTCSVYITYSKEEEAVRCIQSVHGFVLEGKSLKA 186 (810)
Q Consensus 107 VYV~GLP~~iaEEDLLr~~EyFGQYGkI~KIvInrdk~g~~~q~~~~~gsAYVTFs~~EDA~rAI~aLDG~~LDGR~LRA 186 (810)
|||++|-++++++.| +.+|..||+|..|.+.++..++ ..+|++||||.+.++|.+|...|||++|-||.|||
T Consensus 281 l~vgnLHfNite~~l---r~ifepfg~Ie~v~l~~d~~tG-----~skgfGfi~f~~~~~ar~a~e~lngfelAGr~ikV 352 (549)
T KOG0147|consen 281 LYVGNLHFNITEDML---RGIFEPFGKIENVQLTKDSETG-----RSKGFGFITFVNKEDARKALEQLNGFELAGRLIKV 352 (549)
T ss_pred hhhcccccCchHHHH---hhhccCcccceeeeeccccccc-----cccCcceEEEecHHHHHHHHHHhccceecCceEEE
Confidence 899999999999888 7999999999999999987554 24567899999999999999999999999999999
Q ss_pred eecCCCC
Q 003574 187 CFGTTKY 193 (810)
Q Consensus 187 SfGTTKY 193 (810)
+..|-+.
T Consensus 353 ~~v~~r~ 359 (549)
T KOG0147|consen 353 SVVTERV 359 (549)
T ss_pred EEeeeec
Confidence 9888763
No 60
>KOG4661 consensus Hsp27-ERE-TATA-binding protein/Scaffold attachment factor (SAF-B) [Transcription]
Probab=98.43 E-value=3e-07 Score=104.16 Aligned_cols=79 Identities=27% Similarity=0.516 Sum_probs=67.4
Q ss_pred cCeEEEeCCCCCCChhHHHHHHHhhccCcceeEEEEeecCCCcccccCCCceEEEEEeCCHHHHHHHHHHhCCCccCCcE
Q 003574 104 RNLVYIVGLPLNLGDEDLLQRREYFGQYGKVLKVSMSRTAAGVIQQFPNNTCSVYITYSKEEEAVRCIQSVHGFVLEGKS 183 (810)
Q Consensus 104 kNLVYV~GLP~~iaEEDLLr~~EyFGQYGkI~KIvInrdk~g~~~q~~~~~gsAYVTFs~~EDA~rAI~aLDG~~LDGR~ 183 (810)
...+||.||.....--+| +.+|++||||+-..|..+..+ |.-++++|||+.+.++|.+||..|+-+.|.||+
T Consensus 405 gRNlWVSGLSstTRAtDL---KnlFSKyGKVvGAKVVTNaRs-----PGaRCYGfVTMSts~eAtkCI~hLHrTELHGrm 476 (940)
T KOG4661|consen 405 GRNLWVSGLSSTTRATDL---KNLFSKYGKVVGAKVVTNARS-----PGARCYGFVTMSTSAEATKCIEHLHRTELHGRM 476 (940)
T ss_pred ccceeeeccccchhhhHH---HHHHHHhcceeceeeeecCCC-----CCcceeEEEEecchHHHHHHHHHhhhhhhccee
Confidence 344799999999888899 899999999997777665443 245789999999999999999999999999999
Q ss_pred EEEeecC
Q 003574 184 LKACFGT 190 (810)
Q Consensus 184 LRASfGT 190 (810)
|.|.-+.
T Consensus 477 ISVEkaK 483 (940)
T KOG4661|consen 477 ISVEKAK 483 (940)
T ss_pred eeeeecc
Confidence 9988543
No 61
>KOG4208 consensus Nucleolar RNA-binding protein NIFK [General function prediction only]
Probab=98.31 E-value=1.4e-06 Score=89.17 Aligned_cols=79 Identities=20% Similarity=0.401 Sum_probs=70.7
Q ss_pred cCeEEEeCCCCCCChhHHHHHHHhhccC-cceeEEEEeecCCCcccccCCCceEEEEEeCCHHHHHHHHHHhCCCccCCc
Q 003574 104 RNLVYIVGLPLNLGDEDLLQRREYFGQY-GKVLKVSMSRTAAGVIQQFPNNTCSVYITYSKEEEAVRCIQSVHGFVLEGK 182 (810)
Q Consensus 104 kNLVYV~GLP~~iaEEDLLr~~EyFGQY-GkI~KIvInrdk~g~~~q~~~~~gsAYVTFs~~EDA~rAI~aLDG~~LDGR 182 (810)
...|||.-+|.-+-+-++ ..||+|| |.+..+++.|++.++ +.+++|||.|+++|.|.-|-..||++.|.|+
T Consensus 49 ~g~~~~~~~p~g~~e~~~---~~~~~q~~g~v~r~rlsRnkrTG-----NSKgYAFVEFEs~eVA~IaAETMNNYLl~e~ 120 (214)
T KOG4208|consen 49 EGVVYVDHIPHGFFETEI---LNYFRQFGGTVTRFRLSRNKRTG-----NSKGYAFVEFESEEVAKIAAETMNNYLLMEH 120 (214)
T ss_pred ccceeecccccchhHHHH---hhhhhhcCCeeEEEEeecccccC-----CcCceEEEEeccHHHHHHHHHHhhhhhhhhh
Confidence 567999999999999888 5899999 888888998988776 5678999999999999999999999999999
Q ss_pred EEEEeecC
Q 003574 183 SLKACFGT 190 (810)
Q Consensus 183 ~LRASfGT 190 (810)
.|.|.|=-
T Consensus 121 lL~c~vmp 128 (214)
T KOG4208|consen 121 LLECHVMP 128 (214)
T ss_pred eeeeEEeC
Confidence 99999833
No 62
>KOG0124 consensus Polypyrimidine tract-binding protein PUF60 (RRM superfamily) [RNA processing and modification]
Probab=98.29 E-value=6.3e-07 Score=97.77 Aligned_cols=75 Identities=21% Similarity=0.439 Sum_probs=67.9
Q ss_pred CeEEEeCCCCCCChhHHHHHHHhhccCcceeEEEEeecCCCcccccCCCceEEEEEeCCHHHHHHHHHHhCCCccCCcEE
Q 003574 105 NLVYIVGLPLNLGDEDLLQRREYFGQYGKVLKVSMSRTAAGVIQQFPNNTCSVYITYSKEEEAVRCIQSVHGFVLEGKSL 184 (810)
Q Consensus 105 NLVYV~GLP~~iaEEDLLr~~EyFGQYGkI~KIvInrdk~g~~~q~~~~~gsAYVTFs~~EDA~rAI~aLDG~~LDGR~L 184 (810)
..|||+.|.+++.|+-| +..|..||+|+.|.|.-+..+. ..+++|||.|+=+|-|..|++.|||..++||.|
T Consensus 114 cRvYVGSIsfEl~EDti---R~AF~PFGPIKSInMSWDp~T~-----kHKgFAFVEYEvPEaAqLAlEqMNg~mlGGRNi 185 (544)
T KOG0124|consen 114 CRVYVGSISFELREDTI---RRAFDPFGPIKSINMSWDPATG-----KHKGFAFVEYEVPEAAQLALEQMNGQMLGGRNI 185 (544)
T ss_pred HheeeeeeEEEechHHH---HhhccCCCCcceeecccccccc-----cccceEEEEEeCcHHHHHHHHHhccccccCccc
Confidence 46999999999988666 7899999999999999887765 346789999999999999999999999999999
Q ss_pred EEe
Q 003574 185 KAC 187 (810)
Q Consensus 185 RAS 187 (810)
+|.
T Consensus 186 KVg 188 (544)
T KOG0124|consen 186 KVG 188 (544)
T ss_pred ccc
Confidence 987
No 63
>KOG0146 consensus RNA-binding protein ETR-3 (RRM superfamily) [RNA processing and modification]
Probab=98.28 E-value=7.9e-07 Score=94.10 Aligned_cols=82 Identities=23% Similarity=0.433 Sum_probs=73.7
Q ss_pred ccCeEEEeCCCCCCChhHHHHHHHhhccCcceeEEEEeecCCCcccccCCCceEEEEEeCCHHHHHHHHHHhCCCccCCc
Q 003574 103 QRNLVYIVGLPLNLGDEDLLQRREYFGQYGKVLKVSMSRTAAGVIQQFPNNTCSVYITYSKEEEAVRCIQSVHGFVLEGK 182 (810)
Q Consensus 103 QkNLVYV~GLP~~iaEEDLLr~~EyFGQYGkI~KIvInrdk~g~~~q~~~~~gsAYVTFs~~EDA~rAI~aLDG~~LDGR 182 (810)
....+||.-||.++.+.|| -++|-.||.|+..+|..|+.+. ..++++||.|.++..|..||++|||++|+-+
T Consensus 284 eGCNlFIYHLPQEFgDaEl---iQmF~PFGhivSaKVFvDRATN-----QSKCFGFVSfDNp~SaQaAIqAMNGFQIGMK 355 (371)
T KOG0146|consen 284 EGCNLFIYHLPQEFGDAEL---IQMFLPFGHIVSAKVFVDRATN-----QSKCFGFVSFDNPASAQAAIQAMNGFQIGMK 355 (371)
T ss_pred CcceEEEEeCchhhccHHH---HHHhccccceeeeeeeehhccc-----cccceeeEecCCchhHHHHHHHhcchhhhhh
Confidence 3567899999999999999 5999999999998888887765 3578899999999999999999999999999
Q ss_pred EEEEeecCCC
Q 003574 183 SLKACFGTTK 192 (810)
Q Consensus 183 ~LRASfGTTK 192 (810)
.|||.+-..|
T Consensus 356 RLKVQLKRPk 365 (371)
T KOG0146|consen 356 RLKVQLKRPK 365 (371)
T ss_pred hhhhhhcCcc
Confidence 9999887666
No 64
>KOG0533 consensus RRM motif-containing protein [RNA processing and modification]
Probab=98.23 E-value=2.5e-06 Score=89.40 Aligned_cols=77 Identities=23% Similarity=0.504 Sum_probs=69.6
Q ss_pred CeEEEeCCCCCCChhHHHHHHHhhccCcceeEEEEeecCCCcccccCCCceEEEEEeCCHHHHHHHHHHhCCCccCCcEE
Q 003574 105 NLVYIVGLPLNLGDEDLLQRREYFGQYGKVLKVSMSRTAAGVIQQFPNNTCSVYITYSKEEEAVRCIQSVHGFVLEGKSL 184 (810)
Q Consensus 105 NLVYV~GLP~~iaEEDLLr~~EyFGQYGkI~KIvInrdk~g~~~q~~~~~gsAYVTFs~~EDA~rAI~aLDG~~LDGR~L 184 (810)
..|||.|||+.+.++|| .|+|.+||.++++.|..+..+. +-+.|=|+|.+.+||.+||+.++|..|||+.|
T Consensus 84 ~~v~v~NL~~~V~~~Dl---~eLF~~~~~~~r~~vhy~~~G~------s~Gta~v~~~r~~DA~~avk~~~gv~ldG~~m 154 (243)
T KOG0533|consen 84 TKVNVSNLPYGVIDADL---KELFAEFGELKRVAVHYDRAGR------SLGTADVSFNRRDDAERAVKKYNGVALDGRPM 154 (243)
T ss_pred ceeeeecCCcCcchHHH---HHHHHHhccceEEeeccCCCCC------CCccceeeecchHhHHHHHHHhcCcccCCcee
Confidence 67999999999999999 8999999999999999887764 45688999999999999999999999999999
Q ss_pred EEeecC
Q 003574 185 KACFGT 190 (810)
Q Consensus 185 RASfGT 190 (810)
++..-.
T Consensus 155 k~~~i~ 160 (243)
T KOG0533|consen 155 KIEIIS 160 (243)
T ss_pred eeEEec
Confidence 877533
No 65
>KOG0153 consensus Predicted RNA-binding protein (RRM superfamily) [General function prediction only]
Probab=98.23 E-value=2.4e-06 Score=92.76 Aligned_cols=73 Identities=26% Similarity=0.491 Sum_probs=63.9
Q ss_pred eEEEeCCCCCCChhHHHHHHHhhccCcceeEEEEeecCCCcccccCCCceEEEEEeCCHHHHHHHHHHhCC-CccCCcEE
Q 003574 106 LVYIVGLPLNLGDEDLLQRREYFGQYGKVLKVSMSRTAAGVIQQFPNNTCSVYITYSKEEEAVRCIQSVHG-FVLEGKSL 184 (810)
Q Consensus 106 LVYV~GLP~~iaEEDLLr~~EyFGQYGkI~KIvInrdk~g~~~q~~~~~gsAYVTFs~~EDA~rAI~aLDG-~~LDGR~L 184 (810)
+|||+||...+++-+| ++.|-|||.|..|++... .++|||+|.+.+.|+.|....-. ..++|+.|
T Consensus 230 tLyIg~l~d~v~e~dI---rdhFyqyGeirsi~~~~~-----------~~CAFv~ftTR~aAE~Aae~~~n~lvI~G~Rl 295 (377)
T KOG0153|consen 230 TLYIGGLNDEVLEQDI---RDHFYQYGEIRSIRILPR-----------KGCAFVTFTTREAAEKAAEKSFNKLVINGFRL 295 (377)
T ss_pred EEEecccccchhHHHH---HHHHhhcCCeeeEEeecc-----------cccceeeehhhHHHHHHHHhhcceeeecceEE
Confidence 7999999999999999 999999999999999743 24799999999999999865544 46899999
Q ss_pred EEeecCCC
Q 003574 185 KACFGTTK 192 (810)
Q Consensus 185 RASfGTTK 192 (810)
++-||.++
T Consensus 296 ~i~Wg~~~ 303 (377)
T KOG0153|consen 296 KIKWGRPK 303 (377)
T ss_pred EEEeCCCc
Confidence 99999994
No 66
>KOG0109 consensus RNA-binding protein LARK, contains RRM and retroviral-type Zn-finger domains [RNA processing and modification; General function prediction only]
Probab=98.23 E-value=1.2e-06 Score=93.65 Aligned_cols=71 Identities=27% Similarity=0.538 Sum_probs=66.2
Q ss_pred eEEEeCCCCCCChhHHHHHHHhhccCcceeEEEEeecCCCcccccCCCceEEEEEeCCHHHHHHHHHHhCCCccCCcEEE
Q 003574 106 LVYIVGLPLNLGDEDLLQRREYFGQYGKVLKVSMSRTAAGVIQQFPNNTCSVYITYSKEEEAVRCIQSVHGFVLEGKSLK 185 (810)
Q Consensus 106 LVYV~GLP~~iaEEDLLr~~EyFGQYGkI~KIvInrdk~g~~~q~~~~~gsAYVTFs~~EDA~rAI~aLDG~~LDGR~LR 185 (810)
.+||+|||.+..+.+| +.+|.|||||++..|.++ ++||-.+++..|..||+.|+|..|+|..|+
T Consensus 4 KLFIGNLp~~~~~~el---r~lFe~ygkVlECDIvKN-------------YgFVHiEdktaaedairNLhgYtLhg~nIn 67 (346)
T KOG0109|consen 4 KLFIGNLPREATEQEL---RSLFEQYGKVLECDIVKN-------------YGFVHIEDKTAAEDAIRNLHGYTLHGVNIN 67 (346)
T ss_pred chhccCCCcccchHHH---HHHHHhhCceEeeeeecc-------------cceEEeecccccHHHHhhcccceecceEEE
Confidence 5799999999999899 899999999999999874 579999999999999999999999999999
Q ss_pred EeecCCC
Q 003574 186 ACFGTTK 192 (810)
Q Consensus 186 ASfGTTK 192 (810)
|.-.+.|
T Consensus 68 VeaSksK 74 (346)
T KOG0109|consen 68 VEASKSK 74 (346)
T ss_pred EEecccc
Confidence 9888777
No 67
>KOG0123 consensus Polyadenylate-binding protein (RRM superfamily) [RNA processing and modification; Translation, ribosomal structure and biogenesis]
Probab=98.22 E-value=3.1e-06 Score=93.01 Aligned_cols=74 Identities=22% Similarity=0.501 Sum_probs=67.3
Q ss_pred EEEeCCCCCCChhHHHHHHHhhccCcceeEEEEeecCCCcccccCCCceEEEEEeCCHHHHHHHHHHhCCCccCCcEEEE
Q 003574 107 VYIVGLPLNLGDEDLLQRREYFGQYGKVLKVSMSRTAAGVIQQFPNNTCSVYITYSKEEEAVRCIQSVHGFVLEGKSLKA 186 (810)
Q Consensus 107 VYV~GLP~~iaEEDLLr~~EyFGQYGkI~KIvInrdk~g~~~q~~~~~gsAYVTFs~~EDA~rAI~aLDG~~LDGR~LRA 186 (810)
|||-+|++.++.++| +++|+.||+|+.+.|.++..+ .+|+ ||.|+++++|.+||..+||..+.|+.|-+
T Consensus 79 ~~i~nl~~~~~~~~~---~d~f~~~g~ilS~kv~~~~~g-------~kg~-FV~f~~e~~a~~ai~~~ng~ll~~kki~v 147 (369)
T KOG0123|consen 79 VFIKNLDESIDNKSL---YDTFSEFGNILSCKVATDENG-------SKGY-FVQFESEESAKKAIEKLNGMLLNGKKIYV 147 (369)
T ss_pred eeecCCCcccCcHHH---HHHHHhhcCeeEEEEEEcCCC-------ceee-EEEeCCHHHHHHHHHHhcCcccCCCeeEE
Confidence 999999999999999 999999999999999998765 3567 99999999999999999999999999988
Q ss_pred eecCC
Q 003574 187 CFGTT 191 (810)
Q Consensus 187 SfGTT 191 (810)
.....
T Consensus 148 g~~~~ 152 (369)
T KOG0123|consen 148 GLFER 152 (369)
T ss_pred eeccc
Confidence 65443
No 68
>KOG0415 consensus Predicted peptidyl prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones]
Probab=98.22 E-value=3.4e-06 Score=91.99 Aligned_cols=89 Identities=17% Similarity=0.341 Sum_probs=77.6
Q ss_pred cccccccc-ccCeEEEeCCCCCCChhHHHHHHHhhccCcceeEEEEeecCCCcccccCCCceEEEEEeCCHHHHHHHHHH
Q 003574 95 QLSSVRVI-QRNLVYIVGLPLNLGDEDLLQRREYFGQYGKVLKVSMSRTAAGVIQQFPNNTCSVYITYSKEEEAVRCIQS 173 (810)
Q Consensus 95 ~LanvRVI-QkNLVYV~GLP~~iaEEDLLr~~EyFGQYGkI~KIvInrdk~g~~~q~~~~~gsAYVTFs~~EDA~rAI~a 173 (810)
.|...-|. ..|.|||--|++-.++||| .-+|+.||+|....|.++..++. .-.+|||.|.++++.+.|.-.
T Consensus 229 DlpdAd~~PPeNVLFVCKLNPVTtDeDL---eiIFSrFG~i~sceVIRD~ktgd-----sLqyaFiEFen~escE~AyFK 300 (479)
T KOG0415|consen 229 DLPDADVKPPENVLFVCKLNPVTTDEDL---EIIFSRFGKIVSCEVIRDRKTGD-----SLQYAFIEFENKESCEQAYFK 300 (479)
T ss_pred CCcccccCCCcceEEEEecCCcccccch---hhHHhhcccceeeeEEecccccc-----hhheeeeeecchhhHHHHHhh
Confidence 55555544 4789999999999999999 89999999999999999887652 345899999999999999999
Q ss_pred hCCCccCCcEEEEeecCC
Q 003574 174 VHGFVLEGKSLKACFGTT 191 (810)
Q Consensus 174 LDG~~LDGR~LRASfGTT 191 (810)
||+..||.|.|.|.|...
T Consensus 301 MdNvLIDDrRIHVDFSQS 318 (479)
T KOG0415|consen 301 MDNVLIDDRRIHVDFSQS 318 (479)
T ss_pred hcceeeccceEEeehhhh
Confidence 999999999999999554
No 69
>KOG0131 consensus Splicing factor 3b, subunit 4 [RNA processing and modification]
Probab=98.16 E-value=2e-06 Score=87.00 Aligned_cols=88 Identities=18% Similarity=0.293 Sum_probs=71.7
Q ss_pred ccccccccccCeEEEeCCCCCCChhHHHHHHHhhccCcceeEE-EEeecCCCcccccCCCceEEEEEeCCHHHHHHHHHH
Q 003574 95 QLSSVRVIQRNLVYIVGLPLNLGDEDLLQRREYFGQYGKVLKV-SMSRTAAGVIQQFPNNTCSVYITYSKEEEAVRCIQS 173 (810)
Q Consensus 95 ~LanvRVIQkNLVYV~GLP~~iaEEDLLr~~EyFGQYGkI~KI-vInrdk~g~~~q~~~~~gsAYVTFs~~EDA~rAI~a 173 (810)
+-.+++|- -.+||++|.+.+.+ .+| ++.|..||.|.+. .|.++..++ ++++++||.|+..|.+.+||.+
T Consensus 89 ~~~nl~vg--anlfvgNLd~~vDe-~~L--~dtFsafG~l~~~P~i~rd~~tg-----~~~~~g~i~~~sfeasd~ai~s 158 (203)
T KOG0131|consen 89 HQKNLDVG--ANLFVGNLDPEVDE-KLL--YDTFSAFGVLISPPKIMRDPDTG-----NPKGFGFINYASFEASDAAIGS 158 (203)
T ss_pred cccccccc--ccccccccCcchhH-HHH--HHHHHhccccccCCcccccccCC-----CCCCCeEEechhHHHHHHHHHH
Confidence 33455554 55799999998754 555 9999999999875 566665544 4677899999999999999999
Q ss_pred hCCCccCCcEEEEeecCCC
Q 003574 174 VHGFVLEGKSLKACFGTTK 192 (810)
Q Consensus 174 LDG~~LDGR~LRASfGTTK 192 (810)
|+|+.+..|+++|+|+..|
T Consensus 159 ~ngq~l~nr~itv~ya~k~ 177 (203)
T KOG0131|consen 159 MNGQYLCNRPITVSYAFKK 177 (203)
T ss_pred hccchhcCCceEEEEEEec
Confidence 9999999999999997655
No 70
>KOG0109 consensus RNA-binding protein LARK, contains RRM and retroviral-type Zn-finger domains [RNA processing and modification; General function prediction only]
Probab=98.13 E-value=2.5e-06 Score=91.17 Aligned_cols=77 Identities=17% Similarity=0.418 Sum_probs=70.1
Q ss_pred ccCeEEEeCCCCCCChhHHHHHHHhhccCcceeEEEEeecCCCcccccCCCceEEEEEeCCHHHHHHHHHHhCCCccCCc
Q 003574 103 QRNLVYIVGLPLNLGDEDLLQRREYFGQYGKVLKVSMSRTAAGVIQQFPNNTCSVYITYSKEEEAVRCIQSVHGFVLEGK 182 (810)
Q Consensus 103 QkNLVYV~GLP~~iaEEDLLr~~EyFGQYGkI~KIvInrdk~g~~~q~~~~~gsAYVTFs~~EDA~rAI~aLDG~~LDGR 182 (810)
-...++|+||.+..+..|| ++.|.+||.|++..|.++ ++||-|...|+|..||..|||.+++|+
T Consensus 77 ~stkl~vgNis~tctn~El---Ra~fe~ygpviecdivkd-------------y~fvh~d~~eda~~air~l~~~~~~gk 140 (346)
T KOG0109|consen 77 ASTKLHVGNISPTCTNQEL---RAKFEKYGPVIECDIVKD-------------YAFVHFDRAEDAVEAIRGLDNTEFQGK 140 (346)
T ss_pred CccccccCCCCccccCHHH---hhhhcccCCceeeeeecc-------------eeEEEEeeccchHHHHhcccccccccc
Confidence 3467899999999999999 999999999999998763 689999999999999999999999999
Q ss_pred EEEEeecCCCCcc
Q 003574 183 SLKACFGTTKYCH 195 (810)
Q Consensus 183 ~LRASfGTTKYCs 195 (810)
.|+|...|.+--.
T Consensus 141 ~m~vq~stsrlrt 153 (346)
T KOG0109|consen 141 RMHVQLSTSRLRT 153 (346)
T ss_pred eeeeeeecccccc
Confidence 9999999887543
No 71
>KOG0110 consensus RNA-binding protein (RRM superfamily) [General function prediction only]
Probab=98.08 E-value=1e-05 Score=94.07 Aligned_cols=87 Identities=21% Similarity=0.385 Sum_probs=72.5
Q ss_pred ccccCeEEEeCCCCCCChhHHHHHHHhhccCcceeEEEEeecCCCcccccCCCceEEEEEeCCHHHHHHHHHHhCCCccC
Q 003574 101 VIQRNLVYIVGLPLNLGDEDLLQRREYFGQYGKVLKVSMSRTAAGVIQQFPNNTCSVYITYSKEEEAVRCIQSVHGFVLE 180 (810)
Q Consensus 101 VIQkNLVYV~GLP~~iaEEDLLr~~EyFGQYGkI~KIvInrdk~g~~~q~~~~~gsAYVTFs~~EDA~rAI~aLDG~~LD 180 (810)
.++.+.+||.||++..+.+++ ...|.++|.|+.|.|.+.+.... -. -+.|+|||.|.++++|.+|+++|+|+.|+
T Consensus 512 ~~~~t~lfvkNlnf~Tt~e~l---~~~F~k~G~VlS~~I~kkkd~~~-k~-lSmGfgFVEF~~~e~A~~a~k~lqgtvld 586 (725)
T KOG0110|consen 512 EETETKLFVKNLNFDTTLEDL---EDLFSKQGTVLSIEISKKKDPAN-KY-LSMGFGFVEFAKPESAQAALKALQGTVLD 586 (725)
T ss_pred cccchhhhhhcCCcccchhHH---HHHHHhcCeEEEEEEeccccccc-cc-cccceeEEEecCHHHHHHHHHHhcCceec
Confidence 344444999999999999999 89999999999999987554321 11 24578999999999999999999999999
Q ss_pred CcEEEEeecCCC
Q 003574 181 GKSLKACFGTTK 192 (810)
Q Consensus 181 GR~LRASfGTTK 192 (810)
|+.|.+.|.-.|
T Consensus 587 GH~l~lk~S~~k 598 (725)
T KOG0110|consen 587 GHKLELKISENK 598 (725)
T ss_pred CceEEEEeccCc
Confidence 999999987644
No 72
>KOG0123 consensus Polyadenylate-binding protein (RRM superfamily) [RNA processing and modification; Translation, ribosomal structure and biogenesis]
Probab=98.07 E-value=3.9e-06 Score=92.27 Aligned_cols=84 Identities=24% Similarity=0.423 Sum_probs=74.6
Q ss_pred cccccCeEEEeCCCCCCChhHHHHHHHhhccCcceeEEEEeecCCCcccccCCCceEEEEEeCCHHHHHHHHHHhCCCcc
Q 003574 100 RVIQRNLVYIVGLPLNLGDEDLLQRREYFGQYGKVLKVSMSRTAAGVIQQFPNNTCSVYITYSKEEEAVRCIQSVHGFVL 179 (810)
Q Consensus 100 RVIQkNLVYV~GLP~~iaEEDLLr~~EyFGQYGkI~KIvInrdk~g~~~q~~~~~gsAYVTFs~~EDA~rAI~aLDG~~L 179 (810)
+..+.-.|||-||+..++++.| .++|..||.|..+.|..+..+. .+|++||.|...++|.+|+..+||..+
T Consensus 266 ~~~~~~nl~vknld~~~~~e~L---~~~f~~~GeI~s~kv~~~~~g~------skG~gfV~fs~~eeA~~A~~~~n~~~i 336 (369)
T KOG0123|consen 266 VSLQGANLYVKNLDETLSDEKL---RKIFSSFGEITSAKVMVDENGK------SKGFGFVEFSSPEEAKKAMTEMNGRLI 336 (369)
T ss_pred ccccccccccccCccccchhHH---HHHHhcccceeeEEEEeccCCC------ccceEEEEcCCHHHHHHHHHhhChhhh
Confidence 3566677899999999999999 8999999999999999876653 467899999999999999999999999
Q ss_pred CCcEEEEeecCCC
Q 003574 180 EGKSLKACFGTTK 192 (810)
Q Consensus 180 DGR~LRASfGTTK 192 (810)
.|+.|.+.++..+
T Consensus 337 ~~k~l~vav~qr~ 349 (369)
T KOG0123|consen 337 GGKPLYVAVAQRK 349 (369)
T ss_pred cCCchhhhHHhhh
Confidence 9999999987743
No 73
>KOG1548 consensus Transcription elongation factor TAT-SF1 [Transcription]
Probab=97.98 E-value=1.8e-05 Score=86.21 Aligned_cols=87 Identities=23% Similarity=0.313 Sum_probs=74.2
Q ss_pred cccccccccCeEEEeCCCCCCChhHHHHHHHhhccCccee--------EEEEeecCCCcccccCCCceEEEEEeCCHHHH
Q 003574 96 LSSVRVIQRNLVYIVGLPLNLGDEDLLQRREYFGQYGKVL--------KVSMSRTAAGVIQQFPNNTCSVYITYSKEEEA 167 (810)
Q Consensus 96 LanvRVIQkNLVYV~GLP~~iaEEDLLr~~EyFGQYGkI~--------KIvInrdk~g~~~q~~~~~gsAYVTFs~~EDA 167 (810)
-.++-..+...|||.|||..++.+++ -++|+++|-|+ +|.|.++..|. .+|-|-|+|.+.|..
T Consensus 126 ~~~~~~~~Nt~VYVsgLP~DiT~dE~---~~~~sKcGiI~~d~~t~epk~KlYrd~~G~------lKGDaLc~y~K~ESV 196 (382)
T KOG1548|consen 126 WFNPEPKVNTSVYVSGLPLDITVDEF---AEVMSKCGIIMRDPQTGEPKVKLYRDNQGK------LKGDALCCYIKRESV 196 (382)
T ss_pred ccCcccccCceEEecCCCCcccHHHH---HHHHHhcceEeccCCCCCeeEEEEecCCCC------ccCceEEEeecccHH
Confidence 34455666667999999999999999 69999999998 57888877653 466789999999999
Q ss_pred HHHHHHhCCCccCCcEEEEeecCC
Q 003574 168 VRCIQSVHGFVLEGKSLKACFGTT 191 (810)
Q Consensus 168 ~rAI~aLDG~~LDGR~LRASfGTT 191 (810)
..||+.||+..|.|+.|||.-|.-
T Consensus 197 eLA~~ilDe~~~rg~~~rVerAkf 220 (382)
T KOG1548|consen 197 ELAIKILDEDELRGKKLRVERAKF 220 (382)
T ss_pred HHHHHHhCcccccCcEEEEehhhh
Confidence 999999999999999999986543
No 74
>KOG0151 consensus Predicted splicing regulator, contains RRM, SWAP and RPR domains [General function prediction only]
Probab=97.95 E-value=1.6e-05 Score=92.53 Aligned_cols=108 Identities=16% Similarity=0.272 Sum_probs=82.5
Q ss_pred cccCeEEEeCCCCCCChhHHHHHHHhhccCcceeEEEEeecCCCcccccCCCceEEEEEeCCHHHHHHHHHHhCCCccCC
Q 003574 102 IQRNLVYIVGLPLNLGDEDLLQRREYFGQYGKVLKVSMSRTAAGVIQQFPNNTCSVYITYSKEEEAVRCIQSVHGFVLEG 181 (810)
Q Consensus 102 IQkNLVYV~GLP~~iaEEDLLr~~EyFGQYGkI~KIvInrdk~g~~~q~~~~~gsAYVTFs~~EDA~rAI~aLDG~~LDG 181 (810)
-|...|||+||++.+.++.|| .-||.||+|..|.|.-.+.-.. -.+.+-++||-|....||++|+..|+|.++.+
T Consensus 172 P~TTNlyv~Nlnpsv~E~~ll---~tfGrfgPlasvKimwpRtEeE--k~r~r~cgfvafmnR~D~era~k~lqg~iv~~ 246 (877)
T KOG0151|consen 172 PQTTNLYVGNLNPSVDENFLL---RTFGRFGPLASVKIMWPRTEEE--KRRERNCGFVAFMNRADAERALKELQGIIVME 246 (877)
T ss_pred CcccceeeecCCccccHHHHH---HHhcccCcccceeeecccchhh--hccccccceeeehhhhhHHHHHHHhcceeeee
Confidence 456779999999999999995 7899999999988864322110 01346678999999999999999999999999
Q ss_pred cEEEEeec-------CCCCcccccCCCCCCCCCCcccccC
Q 003574 182 KSLKACFG-------TTKYCHAWLRNVPCTNPDCLYLHEV 214 (810)
Q Consensus 182 R~LRASfG-------TTKYCs~FLRg~~C~N~dC~YLHE~ 214 (810)
..+|.-|| +++|----+-+..=+-+.|..-|+-
T Consensus 247 ~e~K~gWgk~V~ip~~p~~ipp~~h~~~lp~p~s~Lpfna 286 (877)
T KOG0151|consen 247 YEMKLGWGKAVPIPNIPIYIPPPLHEATLPPPPSNLPFNA 286 (877)
T ss_pred eeeeeccccccccCCccccCCChhhhccCCCCccCCcccC
Confidence 99999999 5566554444444455566655554
No 75
>KOG0124 consensus Polypyrimidine tract-binding protein PUF60 (RRM superfamily) [RNA processing and modification]
Probab=97.90 E-value=1.9e-05 Score=86.47 Aligned_cols=80 Identities=23% Similarity=0.432 Sum_probs=71.5
Q ss_pred cCeEEEeCCCCCCChhHHHHHHHhhccCcceeEEEEeecCCCcccccCCCceEEEEEeCCHHHHHHHHHHhCCCccCCcE
Q 003574 104 RNLVYIVGLPLNLGDEDLLQRREYFGQYGKVLKVSMSRTAAGVIQQFPNNTCSVYITYSKEEEAVRCIQSVHGFVLEGKS 183 (810)
Q Consensus 104 kNLVYV~GLP~~iaEEDLLr~~EyFGQYGkI~KIvInrdk~g~~~q~~~~~gsAYVTFs~~EDA~rAI~aLDG~~LDGR~ 183 (810)
-|.|||..+.+++.++|| +..|.-||+|++..+.+...+. ..+|++||.|.+...-..||..||=+-|+|..
T Consensus 210 fnRiYVaSvHpDLSe~Di---KSVFEAFG~I~~C~LAr~pt~~-----~HkGyGfiEy~n~qs~~eAiasMNlFDLGGQy 281 (544)
T KOG0124|consen 210 FNRIYVASVHPDLSETDI---KSVFEAFGEIVKCQLARAPTGR-----GHKGYGFIEYNNLQSQSEAIASMNLFDLGGQY 281 (544)
T ss_pred hheEEeeecCCCccHHHH---HHHHHhhcceeeEEeeccCCCC-----CccceeeEEeccccchHHHhhhcchhhcccce
Confidence 588999999999999999 8999999999999999987654 24678899999999999999999999999999
Q ss_pred EEEeecCC
Q 003574 184 LKACFGTT 191 (810)
Q Consensus 184 LRASfGTT 191 (810)
|||--..|
T Consensus 282 LRVGk~vT 289 (544)
T KOG0124|consen 282 LRVGKCVT 289 (544)
T ss_pred EecccccC
Confidence 99864443
No 76
>KOG4205 consensus RNA-binding protein musashi/mRNA cleavage and polyadenylation factor I complex, subunit HRP1 [RNA processing and modification]
Probab=97.89 E-value=1e-05 Score=87.42 Aligned_cols=78 Identities=23% Similarity=0.410 Sum_probs=63.4
Q ss_pred ccCeEEEeCCCCCCChhHHHHHHHhhccCcceeEEEEeecCCCcccccCCCceEEEEEeCCHHHHHHHHHHhCCCccCCc
Q 003574 103 QRNLVYIVGLPLNLGDEDLLQRREYFGQYGKVLKVSMSRTAAGVIQQFPNNTCSVYITYSKEEEAVRCIQSVHGFVLEGK 182 (810)
Q Consensus 103 QkNLVYV~GLP~~iaEEDLLr~~EyFGQYGkI~KIvInrdk~g~~~q~~~~~gsAYVTFs~~EDA~rAI~aLDG~~LDGR 182 (810)
....+||+||++++++|.| ++||++||+|.+.+|.++..++ +.++++||+|++.+.-.+++. ..-..||||
T Consensus 5 ~~~KlfiGgisw~ttee~L---r~yf~~~Gev~d~~vm~d~~t~-----rsrgFgfv~f~~~~~v~~vl~-~~~h~~dgr 75 (311)
T KOG4205|consen 5 ESGKLFIGGLSWETTEESL---REYFSQFGEVTDCVVMRDPSTG-----RSRGFGFVTFATPEGVDAVLN-ARTHKLDGR 75 (311)
T ss_pred CCcceeecCcCccccHHHH---HHHhcccCceeeEEEeccCCCC-----CcccccceecCCCcchheeec-ccccccCCc
Confidence 3457899999999999999 9999999999999999988764 567889999999887776654 344567888
Q ss_pred EEEEeec
Q 003574 183 SLKACFG 189 (810)
Q Consensus 183 ~LRASfG 189 (810)
.|-+-=+
T Consensus 76 ~ve~k~a 82 (311)
T KOG4205|consen 76 SVEPKRA 82 (311)
T ss_pred cccceec
Confidence 7765433
No 77
>KOG1548 consensus Transcription elongation factor TAT-SF1 [Transcription]
Probab=97.81 E-value=4.6e-05 Score=83.16 Aligned_cols=62 Identities=31% Similarity=0.512 Sum_probs=53.8
Q ss_pred HHhhccCcceeEEEEeecCCCcccccCCCceEEEEEeCCHHHHHHHHHHhCCCccCCcEEEEee--cCCCCcc
Q 003574 125 REYFGQYGKVLKVSMSRTAAGVIQQFPNNTCSVYITYSKEEEAVRCIQSVHGFVLEGKSLKACF--GTTKYCH 195 (810)
Q Consensus 125 ~EyFGQYGkI~KIvInrdk~g~~~q~~~~~gsAYVTFs~~EDA~rAI~aLDG~~LDGR~LRASf--GTTKYCs 195 (810)
.+--.+||.|.+|+|.-++ |-|-|-|+|.+.++|..||+.|+|..++||+|.|+. |+|+|-.
T Consensus 294 ~eec~K~G~v~~vvv~d~h---------PdGvvtV~f~n~eeA~~ciq~m~GR~fdgRql~A~i~DG~t~~~~ 357 (382)
T KOG1548|consen 294 TEECEKFGQVRKVVVYDRH---------PDGVVTVSFRNNEEADQCIQTMDGRWFDGRQLTASIWDGKTKFQT 357 (382)
T ss_pred HHHHHHhCCcceEEEeccC---------CCceeEEEeCChHHHHHHHHHhcCeeecceEEEEEEeCCcceeee
Confidence 4667899999999998542 446789999999999999999999999999999996 8888765
No 78
>KOG4205 consensus RNA-binding protein musashi/mRNA cleavage and polyadenylation factor I complex, subunit HRP1 [RNA processing and modification]
Probab=97.71 E-value=3.9e-05 Score=83.09 Aligned_cols=85 Identities=20% Similarity=0.325 Sum_probs=71.1
Q ss_pred cCeEEEeCCCCCCChhHHHHHHHhhccCcceeEEEEeecCCCcccccCCCceEEEEEeCCHHHHHHHHHHhCCCccCCcE
Q 003574 104 RNLVYIVGLPLNLGDEDLLQRREYFGQYGKVLKVSMSRTAAGVIQQFPNNTCSVYITYSKEEEAVRCIQSVHGFVLEGKS 183 (810)
Q Consensus 104 kNLVYV~GLP~~iaEEDLLr~~EyFGQYGkI~KIvInrdk~g~~~q~~~~~gsAYVTFs~~EDA~rAI~aLDG~~LDGR~ 183 (810)
-..|||+|||..++++++ ++||-|||+|..+++..++... .+++++||+|..++...++. ...-..|.|+.
T Consensus 97 tkkiFvGG~~~~~~e~~~---r~yfe~~g~v~~~~~~~d~~~~-----~~rgFgfv~~~~e~sVdkv~-~~~f~~~~gk~ 167 (311)
T KOG4205|consen 97 TKKIFVGGLPPDTTEEDF---KDYFEQFGKVADVVIMYDKTTS-----RPRGFGFVTFDSEDSVDKVT-LQKFHDFNGKK 167 (311)
T ss_pred eeEEEecCcCCCCchHHH---hhhhhccceeEeeEEeeccccc-----ccccceeeEeccccccceec-ccceeeecCce
Confidence 447999999999999999 9999999999999999987664 46778999999977666654 46777899999
Q ss_pred EEEeecCCCCcccc
Q 003574 184 LKACFGTTKYCHAW 197 (810)
Q Consensus 184 LRASfGTTKYCs~F 197 (810)
+.|--|..|--...
T Consensus 168 vevkrA~pk~~~~~ 181 (311)
T KOG4205|consen 168 VEVKRAIPKEVMQS 181 (311)
T ss_pred eeEeeccchhhccc
Confidence 99998888765543
No 79
>KOG4660 consensus Protein Mei2, essential for commitment to meiosis, and related proteins [Cell cycle control, cell division, chromosome partitioning]
Probab=97.69 E-value=2.5e-05 Score=88.99 Aligned_cols=88 Identities=17% Similarity=0.367 Sum_probs=72.4
Q ss_pred hhhhccccccccccCeEEEeCCCCCCChhHHHHHHHhhccCcceeEEEEeecCCCcccccCCCceEEEEEeCCHHHHHHH
Q 003574 91 GKKQQLSSVRVIQRNLVYIVGLPLNLGDEDLLQRREYFGQYGKVLKVSMSRTAAGVIQQFPNNTCSVYITYSKEEEAVRC 170 (810)
Q Consensus 91 ~RK~~LanvRVIQkNLVYV~GLP~~iaEEDLLr~~EyFGQYGkI~KIvInrdk~g~~~q~~~~~gsAYVTFs~~EDA~rA 170 (810)
.|+ ++-.....-...|+|.+||..+++++| .++||.||+|..|..-+. ..+-+||.|-+..+|++|
T Consensus 63 ~~~-~np~~~~~~~~~L~v~nl~~~Vsn~~L---~~~f~~yGeir~ir~t~~----------~~~~~~v~FyDvR~A~~A 128 (549)
T KOG4660|consen 63 LRP-DNPSEKDMNQGTLVVFNLPRSVSNDTL---LRIFGAYGEIREIRETPN----------KRGIVFVEFYDVRDAERA 128 (549)
T ss_pred CCc-CCCCcccCccceEEEEecCCcCCHHHH---HHHHHhhcchhhhhcccc----------cCceEEEEEeehHhHHHH
Confidence 444 555555666677899999999999999 699999999999766443 345689999999999999
Q ss_pred HHHhCCCccCCcEEEEeecCCC
Q 003574 171 IQSVHGFVLEGKSLKACFGTTK 192 (810)
Q Consensus 171 I~aLDG~~LDGR~LRASfGTTK 192 (810)
+++|++..+.|+.|+...|++.
T Consensus 129 lk~l~~~~~~~~~~k~~~~~~~ 150 (549)
T KOG4660|consen 129 LKALNRREIAGKRIKRPGGARR 150 (549)
T ss_pred HHHHHHHHhhhhhhcCCCcccc
Confidence 9999999999999995555554
No 80
>KOG0110 consensus RNA-binding protein (RRM superfamily) [General function prediction only]
Probab=97.69 E-value=2.9e-05 Score=90.38 Aligned_cols=79 Identities=13% Similarity=0.302 Sum_probs=69.5
Q ss_pred CeEEEeCCCCCCChhHHHHHHHhhccCcceeEEEEeecCCCcccccCCCceEEEEEeCCHHHHHHHHHHhCCCccCCcEE
Q 003574 105 NLVYIVGLPLNLGDEDLLQRREYFGQYGKVLKVSMSRTAAGVIQQFPNNTCSVYITYSKEEEAVRCIQSVHGFVLEGKSL 184 (810)
Q Consensus 105 NLVYV~GLP~~iaEEDLLr~~EyFGQYGkI~KIvInrdk~g~~~q~~~~~gsAYVTFs~~EDA~rAI~aLDG~~LDGR~L 184 (810)
+.|.|.|||+..+..++ +++|+.||.|..|.|.+..... ..+|++||+|.++.+|.+|+.+|.++.|-||.|
T Consensus 614 tKIlVRNipFeAt~rEV---r~LF~aFGqlksvRlPKK~~k~-----a~rGF~Fv~f~t~~ea~nA~~al~STHlyGRrL 685 (725)
T KOG0110|consen 614 TKILVRNIPFEATKREV---RKLFTAFGQLKSVRLPKKIGKG-----AHRGFGFVDFLTPREAKNAFDALGSTHLYGRRL 685 (725)
T ss_pred ceeeeeccchHHHHHHH---HHHHhcccceeeeccchhhcch-----hhccceeeeccCcHHHHHHHHhhcccceechhh
Confidence 57999999999999999 9999999999999999862211 236789999999999999999999999999999
Q ss_pred EEeecCC
Q 003574 185 KACFGTT 191 (810)
Q Consensus 185 RASfGTT 191 (810)
...|+..
T Consensus 686 VLEwA~~ 692 (725)
T KOG0110|consen 686 VLEWAKS 692 (725)
T ss_pred heehhcc
Confidence 9988654
No 81
>KOG0146 consensus RNA-binding protein ETR-3 (RRM superfamily) [RNA processing and modification]
Probab=97.68 E-value=6.3e-05 Score=80.12 Aligned_cols=81 Identities=22% Similarity=0.422 Sum_probs=69.9
Q ss_pred cCeEEEeCCCCCCChhHHHHHHHhhccCcceeEEEEeecCCCcccccCCCceEEEEEeCCHHHHHHHHHHhCCCc-cCC-
Q 003574 104 RNLVYIVGLPLNLGDEDLLQRREYFGQYGKVLKVSMSRTAAGVIQQFPNNTCSVYITYSKEEEAVRCIQSVHGFV-LEG- 181 (810)
Q Consensus 104 kNLVYV~GLP~~iaEEDLLr~~EyFGQYGkI~KIvInrdk~g~~~q~~~~~gsAYVTFs~~EDA~rAI~aLDG~~-LDG- 181 (810)
...+||+-|...-.|||+ +.+|..||.|.++.+.+...+. .+|+|||.|....||..||.+|+|.. +-|
T Consensus 19 drklfvgml~kqq~e~dv---rrlf~pfG~~~e~tvlrg~dg~------sKGCAFVKf~s~~eAqaAI~aLHgSqTmpGA 89 (371)
T KOG0146|consen 19 DRKLFVGMLNKQQSEDDV---RRLFQPFGNIEECTVLRGPDGN------SKGCAFVKFSSHAEAQAAINALHGSQTMPGA 89 (371)
T ss_pred chhhhhhhhcccccHHHH---HHHhcccCCcceeEEecCCCCC------CCCceEEEeccchHHHHHHHHhcccccCCCC
Confidence 345799999999999999 7899999999999999877664 46789999999999999999999985 556
Q ss_pred -cEEEEeecCCCC
Q 003574 182 -KSLKACFGTTKY 193 (810)
Q Consensus 182 -R~LRASfGTTKY 193 (810)
.-|.|-|+.|..
T Consensus 90 SSSLVVK~ADTdk 102 (371)
T KOG0146|consen 90 SSSLVVKFADTDK 102 (371)
T ss_pred ccceEEEeccchH
Confidence 468889988853
No 82
>KOG1995 consensus Conserved Zn-finger protein [General function prediction only]
Probab=97.64 E-value=5.4e-05 Score=82.72 Aligned_cols=98 Identities=14% Similarity=0.207 Sum_probs=86.3
Q ss_pred cccccCeEEEeCCCCCCChhHHHHHHHhhccCccee--------EEEEeecCCCcccccCCCceEEEEEeCCHHHHHHHH
Q 003574 100 RVIQRNLVYIVGLPLNLGDEDLLQRREYFGQYGKVL--------KVSMSRTAAGVIQQFPNNTCSVYITYSKEEEAVRCI 171 (810)
Q Consensus 100 RVIQkNLVYV~GLP~~iaEEDLLr~~EyFGQYGkI~--------KIvInrdk~g~~~q~~~~~gsAYVTFs~~EDA~rAI 171 (810)
.+.+...|||-+||..+++.++ .++|.|.|.|. +|.|.+++.+. .+++-|-|+|++.--|+.||
T Consensus 62 ~~s~~~ti~v~g~~d~~~~~~~---~~~f~qcg~ikrnK~t~kPki~~y~dkeT~-----~~KGeatvS~~D~~~akaai 133 (351)
T KOG1995|consen 62 DKSDNETIFVWGCPDSVCENDN---ADFFLQCGVIKRNKRTGKPKIKIYTDKETG-----APKGEATVSYEDPPAAKAAI 133 (351)
T ss_pred cccccccceeeccCccchHHHH---HHHHhhcceeccCCCCCCcchhcccccccc-----CcCCceeeeecChhhhhhhh
Confidence 4888999999999999999888 89999999997 57777777654 46778999999999999999
Q ss_pred HHhCCCccCCcEEEEeecCCCCcccccCCCCCCC
Q 003574 172 QSVHGFVLEGKSLKACFGTTKYCHAWLRNVPCTN 205 (810)
Q Consensus 172 ~aLDG~~LDGR~LRASfGTTKYCs~FLRg~~C~N 205 (810)
...++..+.|.+|+|+++.-+-=-.|.|+.-|++
T Consensus 134 ~~~agkdf~gn~ikvs~a~~r~~ve~~rg~~~~~ 167 (351)
T KOG1995|consen 134 EWFAGKDFCGNTIKVSLAERRTGVESVRGGYPND 167 (351)
T ss_pred hhhccccccCCCchhhhhhhccCcccccccccCc
Confidence 9999999999999999988776668999998765
No 83
>KOG0116 consensus RasGAP SH3 binding protein rasputin, contains NTF2 and RRM domains [Signal transduction mechanisms]
Probab=97.61 E-value=8e-05 Score=83.51 Aligned_cols=88 Identities=15% Similarity=0.294 Sum_probs=69.7
Q ss_pred ccccccccccCeEEEeCCCCCCChhHHHHHHHhhccCcceeEEEEeecCCCcccccCCCceEEEEEeCCHHHHHHHHHHh
Q 003574 95 QLSSVRVIQRNLVYIVGLPLNLGDEDLLQRREYFGQYGKVLKVSMSRTAAGVIQQFPNNTCSVYITYSKEEEAVRCIQSV 174 (810)
Q Consensus 95 ~LanvRVIQkNLVYV~GLP~~iaEEDLLr~~EyFGQYGkI~KIvInrdk~g~~~q~~~~~gsAYVTFs~~EDA~rAI~aL 174 (810)
++...++.-. |||.+||.+++..+| ++.|.+||.|++..|.....+. ..+ +++||+|.+.+++..||++-
T Consensus 281 ~~~~~~~~~~--i~V~nlP~da~~~~l---~~~Fk~FG~Ik~~~I~vr~~~~----~~~-~fgFV~f~~~~~~~~~i~As 350 (419)
T KOG0116|consen 281 NQEPRADGLG--IFVKNLPPDATPAEL---EEVFKQFGPIKEGGIQVRSPGG----KNP-CFGFVEFENAAAVQNAIEAS 350 (419)
T ss_pred Ccceeecccc--eEeecCCCCCCHHHH---HHHHhhcccccccceEEeccCC----CcC-ceEEEEEeecchhhhhhhcC
Confidence 3334444433 999999999999887 9999999999999987765332 134 89999999999999999985
Q ss_pred CCCccCCcEEEEeecCCCC
Q 003574 175 HGFVLEGKSLKACFGTTKY 193 (810)
Q Consensus 175 DG~~LDGR~LRASfGTTKY 193 (810)
-..++||.|.|.--.+.|
T Consensus 351 -p~~ig~~kl~Veek~~~~ 368 (419)
T KOG0116|consen 351 -PLEIGGRKLNVEEKRPGF 368 (419)
T ss_pred -ccccCCeeEEEEeccccc
Confidence 667899999998655543
No 84
>KOG0106 consensus Alternative splicing factor SRp55/B52/SRp75 (RRM superfamily) [RNA processing and modification]
Probab=97.54 E-value=6e-05 Score=78.14 Aligned_cols=71 Identities=24% Similarity=0.423 Sum_probs=64.4
Q ss_pred eEEEeCCCCCCChhHHHHHHHhhccCcceeEEEEeecCCCcccccCCCceEEEEEeCCHHHHHHHHHHhCCCccCCcEEE
Q 003574 106 LVYIVGLPLNLGDEDLLQRREYFGQYGKVLKVSMSRTAAGVIQQFPNNTCSVYITYSKEEEAVRCIQSVHGFVLEGKSLK 185 (810)
Q Consensus 106 LVYV~GLP~~iaEEDLLr~~EyFGQYGkI~KIvInrdk~g~~~q~~~~~gsAYVTFs~~EDA~rAI~aLDG~~LDGR~LR 185 (810)
.|||+.||+...+++| .++|-.||+|..|.|.. +++||.|.+.-||..||..+||.+|.|..+.
T Consensus 3 rv~vg~~~~~~~~~d~---E~~f~~yg~~~d~~mk~-------------gf~fv~fed~rda~Dav~~l~~~~l~~e~~v 66 (216)
T KOG0106|consen 3 RVYIGRLPYRARERDV---ERFFKGYGKIPDADMKN-------------GFGFVEFEDPRDADDAVHDLDGKELCGERLV 66 (216)
T ss_pred ceeecccCCccchhHH---HHHHhhccccccceeec-------------ccceeccCchhhhhcccchhcCceecceeee
Confidence 4899999999999999 99999999999998852 3569999999999999999999999998899
Q ss_pred EeecCCC
Q 003574 186 ACFGTTK 192 (810)
Q Consensus 186 ASfGTTK 192 (810)
+.|+..+
T Consensus 67 ve~~r~~ 73 (216)
T KOG0106|consen 67 VEHARGK 73 (216)
T ss_pred eeccccc
Confidence 9998754
No 85
>KOG4209 consensus Splicing factor RNPS1, SR protein superfamily [RNA processing and modification]
Probab=97.53 E-value=0.00016 Score=75.49 Aligned_cols=84 Identities=12% Similarity=0.216 Sum_probs=75.9
Q ss_pred cccccCeEEEeCCCCCCChhHHHHHHHhhccCcceeEEEEeecCCCcccccCCCceEEEEEeCCHHHHHHHHHHhCCCcc
Q 003574 100 RVIQRNLVYIVGLPLNLGDEDLLQRREYFGQYGKVLKVSMSRTAAGVIQQFPNNTCSVYITYSKEEEAVRCIQSVHGFVL 179 (810)
Q Consensus 100 RVIQkNLVYV~GLP~~iaEEDLLr~~EyFGQYGkI~KIvInrdk~g~~~q~~~~~gsAYVTFs~~EDA~rAI~aLDG~~L 179 (810)
+-+.-..|||+++.+..+.+++ .+.|.-+|.|..|.|..++..+ .++++|||.|...+.+..|++ |||..|
T Consensus 97 ~~~d~~sv~v~nvd~~~t~~~~---e~hf~~Cg~i~~~ti~~d~~~~-----~~k~~~yvef~~~~~~~~ay~-l~gs~i 167 (231)
T KOG4209|consen 97 KEVDAPSVWVGNVDFLVTLTKI---ELHFESCGGINRVTVPKDKFRG-----HPKGFAYVEFSSYELVEEAYK-LDGSEI 167 (231)
T ss_pred hccCCceEEEeccccccccchh---hheeeccCCccceeeeccccCC-----CcceeEEEecccHhhhHHHhh-cCCccc
Confidence 5667778999999999999997 8999999999999999887764 367899999999999999999 999999
Q ss_pred CCcEEEEeecCCC
Q 003574 180 EGKSLKACFGTTK 192 (810)
Q Consensus 180 DGR~LRASfGTTK 192 (810)
.|+.+.+++-.+.
T Consensus 168 ~~~~i~vt~~r~~ 180 (231)
T KOG4209|consen 168 PGPAIEVTLKRTN 180 (231)
T ss_pred ccccceeeeeeee
Confidence 9999999987776
No 86
>KOG1190 consensus Polypyrimidine tract-binding protein [RNA processing and modification]
Probab=97.52 E-value=0.00022 Score=79.31 Aligned_cols=103 Identities=23% Similarity=0.314 Sum_probs=83.1
Q ss_pred cCeEEEeCCCCCCChhHHHHHHHhhccCcceeEEEEeecCCCcccccCCCceEEEEEeCCHHHHHHHHHHhCCCccCCcE
Q 003574 104 RNLVYIVGLPLNLGDEDLLQRREYFGQYGKVLKVSMSRTAAGVIQQFPNNTCSVYITYSKEEEAVRCIQSVHGFVLEGKS 183 (810)
Q Consensus 104 kNLVYV~GLP~~iaEEDLLr~~EyFGQYGkI~KIvInrdk~g~~~q~~~~~gsAYVTFs~~EDA~rAI~aLDG~~LDGR~ 183 (810)
..+|-|++|.+..-.+|.| .-+||-||.|.+|.|..++. -.|.|.|.+...|.-|+.+|+|..+.|++
T Consensus 297 n~vllvsnln~~~VT~d~L--ftlFgvYGdVqRVkil~nkk----------d~ALIQmsd~~qAqLA~~hL~g~~l~gk~ 364 (492)
T KOG1190|consen 297 NVVLLVSNLNEEAVTPDVL--FTLFGVYGDVQRVKILYNKK----------DNALIQMSDGQQAQLAMEHLEGHKLYGKK 364 (492)
T ss_pred ceEEEEecCchhccchhHH--HHHHhhhcceEEEEeeecCC----------cceeeeecchhHHHHHHHHhhcceecCce
Confidence 5788999998876666766 88999999999999987653 36999999999999999999999999999
Q ss_pred EEEeecCCCCcccccCCCCCCCCCCcccccCCCCCCCccHHHHHhhhccc
Q 003574 184 LKACFGTTKYCHAWLRNVPCTNPDCLYLHEVGSQEDSFTKDEIISAYTRS 233 (810)
Q Consensus 184 LRASfGTTKYCs~FLRg~~C~N~dC~YLHE~g~~~DsfTKeEm~s~~~~~ 233 (810)
|||.|.... -.-+--.|.+...+||+...+..+|.
T Consensus 365 lrvt~SKH~---------------~vqlp~egq~d~glT~dy~~spLhrf 399 (492)
T KOG1190|consen 365 LRVTLSKHT---------------NVQLPREGQEDQGLTKDYGNSPLHRF 399 (492)
T ss_pred EEEeeccCc---------------cccCCCCCCccccccccCCCCchhhc
Confidence 999984322 22344456666778888877766663
No 87
>KOG4212 consensus RNA-binding protein hnRNP-M [RNA processing and modification]
Probab=97.51 E-value=0.00025 Score=79.44 Aligned_cols=78 Identities=18% Similarity=0.376 Sum_probs=68.6
Q ss_pred ccccCe-EEEeCCCCCCChhHHHHHHHhhc-cCcceeEEEEeecCCCcccccCCCceEEEEEeCCHHHHHHHHHHhCCCc
Q 003574 101 VIQRNL-VYIVGLPLNLGDEDLLQRREYFG-QYGKVLKVSMSRTAAGVIQQFPNNTCSVYITYSKEEEAVRCIQSVHGFV 178 (810)
Q Consensus 101 VIQkNL-VYV~GLP~~iaEEDLLr~~EyFG-QYGkI~KIvInrdk~g~~~q~~~~~gsAYVTFs~~EDA~rAI~aLDG~~ 178 (810)
|..++. |||.+||+++.=.+| +++|- +.|.|.-|.+..+..+. ++++|-|.|.++|.+++|++.||-+.
T Consensus 40 ~~~r~R~vfItNIpyd~rWqdL---KdLvrekvGev~yveLl~D~~GK------~rGcavVEFk~~E~~qKa~E~lnk~~ 110 (608)
T KOG4212|consen 40 VAARDRSVFITNIPYDYRWQDL---KDLVREKVGEVEYVELLFDESGK------ARGCAVVEFKDPENVQKALEKLNKYE 110 (608)
T ss_pred cccccceEEEecCcchhhhHhH---HHHHHHhcCceEeeeeecccCCC------cCCceEEEeeCHHHHHHHHHHhhhcc
Confidence 444554 999999999998888 78886 48999999999998875 57789999999999999999999999
Q ss_pred cCCcEEEEe
Q 003574 179 LEGKSLKAC 187 (810)
Q Consensus 179 LDGR~LRAS 187 (810)
+.||.|+|-
T Consensus 111 ~~GR~l~vK 119 (608)
T KOG4212|consen 111 VNGRELVVK 119 (608)
T ss_pred ccCceEEEe
Confidence 999999875
No 88
>KOG0147 consensus Transcriptional coactivator CAPER (RRM superfamily) [Transcription]
Probab=97.45 E-value=0.0002 Score=81.75 Aligned_cols=76 Identities=21% Similarity=0.357 Sum_probs=62.8
Q ss_pred HHhhccCcceeEEEEeecCCCcccccCCCceEEEEEeCCHHHHHHHHHHhCCCccCCcEEEEeecC-CCCcccccCCCCC
Q 003574 125 REYFGQYGKVLKVSMSRTAAGVIQQFPNNTCSVYITYSKEEEAVRCIQSVHGFVLEGKSLKACFGT-TKYCHAWLRNVPC 203 (810)
Q Consensus 125 ~EyFGQYGkI~KIvInrdk~g~~~q~~~~~gsAYVTFs~~EDA~rAI~aLDG~~LDGR~LRASfGT-TKYCs~FLRg~~C 203 (810)
.|--++||+|..|.|-+. .-|++||.|...+.|..|+.+|||.+++||.|.|.|=. +.|=+-|..-..
T Consensus 471 ~Eec~k~g~v~hi~vd~n----------s~g~VYvrc~s~~~A~~a~~alhgrWF~gr~Ita~~~~~~~Y~~~FP~~~~- 539 (549)
T KOG0147|consen 471 IEECGKHGKVCHIFVDKN----------SAGCVYVRCPSAEAAGTAVKALHGRWFAGRMITAKYLPLERYHSKFPDSKA- 539 (549)
T ss_pred HHHHHhcCCeeEEEEccC----------CCceEEEecCcHHHHHHHHHHHhhhhhccceeEEEEeehhhhhhhCCCccc-
Confidence 455699999999999763 23689999999999999999999999999999999954 477776766543
Q ss_pred CCCCCcccccC
Q 003574 204 TNPDCLYLHEV 214 (810)
Q Consensus 204 ~N~dC~YLHE~ 214 (810)
.|+|+|-.
T Consensus 540 ---~~~~~~~~ 547 (549)
T KOG0147|consen 540 ---APLLFHTN 547 (549)
T ss_pred ---ceeeeecc
Confidence 68888854
No 89
>KOG4454 consensus RNA binding protein (RRM superfamily) [General function prediction only]
Probab=97.42 E-value=5.4e-05 Score=78.80 Aligned_cols=73 Identities=21% Similarity=0.246 Sum_probs=64.7
Q ss_pred eEEEeCCCCCCChhHHHHHHHhhccCcceeEEEEeecCCCcccccCCCceEEEEEeCCHHHHHHHHHHhCCCccCCcEEE
Q 003574 106 LVYIVGLPLNLGDEDLLQRREYFGQYGKVLKVSMSRTAAGVIQQFPNNTCSVYITYSKEEEAVRCIQSVHGFVLEGKSLK 185 (810)
Q Consensus 106 LVYV~GLP~~iaEEDLLr~~EyFGQYGkI~KIvInrdk~g~~~q~~~~~gsAYVTFs~~EDA~rAI~aLDG~~LDGR~LR 185 (810)
+|||.+|-..+++ +|| .|+|-|-|+|.||.|...+.+. ++ +|||.|.++-...-||+.+||-.+.|+.|+
T Consensus 11 tl~v~n~~~~v~e-elL--~ElfiqaGPV~kv~ip~~~d~~------~k-Fa~v~f~~E~sv~~a~~L~ng~~l~~~e~q 80 (267)
T KOG4454|consen 11 TLLVQNMYSGVSE-ELL--SELFIQAGPVYKVGIPSGQDQE------QK-FAYVFFPNENSVQLAGQLENGDDLEEDEEQ 80 (267)
T ss_pred HHHHHhhhhhhhH-HHH--HHHhhccCceEEEeCCCCccCC------Cc-eeeeecccccchhhhhhhcccchhccchhh
Confidence 5799999999876 555 8999999999999998876653 45 799999999999999999999999999999
Q ss_pred Eee
Q 003574 186 ACF 188 (810)
Q Consensus 186 ASf 188 (810)
+.+
T Consensus 81 ~~~ 83 (267)
T KOG4454|consen 81 RTL 83 (267)
T ss_pred ccc
Confidence 876
No 90
>KOG2202 consensus U2 snRNP splicing factor, small subunit, and related proteins [RNA processing and modification]
Probab=97.41 E-value=9e-05 Score=78.24 Aligned_cols=82 Identities=18% Similarity=0.457 Sum_probs=67.4
Q ss_pred HhhccCcceeEEEEeecCCCcccccCCCceEEEEEeCCHHHHHHHHHHhCCCccCCcEEEEeecCC-----CCcccccCC
Q 003574 126 EYFGQYGKVLKVSMSRTAAGVIQQFPNNTCSVYITYSKEEEAVRCIQSVHGFVLEGKSLKACFGTT-----KYCHAWLRN 200 (810)
Q Consensus 126 EyFGQYGkI~KIvInrdk~g~~~q~~~~~gsAYVTFs~~EDA~rAI~aLDG~~LDGR~LRASfGTT-----KYCs~FLRg 200 (810)
|+=-+||.|.+++|-.+..- .-.|.|||.|...|+|++|++.|||-.+.|++|.+.|..- .-|..|-++
T Consensus 88 E~~~kygEiee~~Vc~Nl~~------hl~GNVYV~f~~Ee~ae~a~~~lnnRw~~G~pi~ae~~pvT~~rea~C~~~e~~ 161 (260)
T KOG2202|consen 88 ELEDKYGEIEELNVCDNLGD------HLVGNVYVKFRSEEDAEAALEDLNNRWYNGRPIHAELSPVTDFREAICGQFERT 161 (260)
T ss_pred HHHHHhhhhhhhhhhcccch------hhhhhhhhhcccHHHHHHHHHHHcCccccCCcceeeecCcCchhhhhhcccccc
Confidence 33349999999988664321 2356799999999999999999999999999999998543 458899999
Q ss_pred CCCCC-CCCcccccC
Q 003574 201 VPCTN-PDCLYLHEV 214 (810)
Q Consensus 201 ~~C~N-~dC~YLHE~ 214 (810)
.|.- ..|-|+|=.
T Consensus 162 -~C~rG~~CnFmH~k 175 (260)
T KOG2202|consen 162 -ECSRGGACNFMHVK 175 (260)
T ss_pred -cCCCCCcCcchhhh
Confidence 7877 599999977
No 91
>KOG4212 consensus RNA-binding protein hnRNP-M [RNA processing and modification]
Probab=97.34 E-value=0.00033 Score=78.50 Aligned_cols=72 Identities=24% Similarity=0.422 Sum_probs=61.3
Q ss_pred cCeEEEeCCCCCCChhHHHHHHHhhccCcceeEEEEeecCCCcccccCCCceEEEEEeCCHHHHHHHHHHhCCCccCCcE
Q 003574 104 RNLVYIVGLPLNLGDEDLLQRREYFGQYGKVLKVSMSRTAAGVIQQFPNNTCSVYITYSKEEEAVRCIQSVHGFVLEGKS 183 (810)
Q Consensus 104 kNLVYV~GLP~~iaEEDLLr~~EyFGQYGkI~KIvInrdk~g~~~q~~~~~gsAYVTFs~~EDA~rAI~aLDG~~LDGR~ 183 (810)
-..|||.+||.+++=.-| ++-|-.||.|+-+.|..+ +. .++ -|.|.++|+|++|+..|||..|+||.
T Consensus 536 a~qIiirNlP~dfTWqml---rDKfre~G~v~yadime~--Gk------skG--VVrF~s~edAEra~a~Mngs~l~Gr~ 602 (608)
T KOG4212|consen 536 ACQIIIRNLPFDFTWQML---RDKFREIGHVLYADIMEN--GK------SKG--VVRFFSPEDAERACALMNGSRLDGRN 602 (608)
T ss_pred ccEEEEecCCccccHHHH---HHHHHhccceehhhhhcc--CC------ccc--eEEecCHHHHHHHHHHhccCcccCce
Confidence 456999999999998555 899999999998888432 11 222 69999999999999999999999999
Q ss_pred EEEee
Q 003574 184 LKACF 188 (810)
Q Consensus 184 LRASf 188 (810)
|+|.|
T Consensus 603 I~V~y 607 (608)
T KOG4212|consen 603 IKVTY 607 (608)
T ss_pred eeeee
Confidence 99987
No 92
>PF13920 zf-C3HC4_3: Zinc finger, C3HC4 type (RING finger); PDB: 2YHN_B 2YHO_G 3T6P_A 2CSY_A 2VJE_B 2VJF_B 2HDP_B 2EA5_A 2ECG_A 3EB5_A ....
Probab=97.33 E-value=8.1e-05 Score=59.61 Aligned_cols=47 Identities=34% Similarity=0.911 Sum_probs=36.7
Q ss_pred cCCCCCCcccCCCcCCCCccccCCCch-hhhhhHhHhHhhhhhccccCCCCCCCCCCc
Q 003574 5 GEKTCPLCAEEMDLTDQQLKPCKCGYE-ICVWCWHHIMDMAEKEETEGRCPACRSPYD 61 (810)
Q Consensus 5 ~d~~CPLC~EelD~tD~~F~PC~CGYQ-IC~fC~~rI~~~a~k~~~~grCPACRr~Yd 61 (810)
++..|++|.+.. .|..|.| ||+. +|..|+.+++. ...+||-||+++.
T Consensus 1 ~~~~C~iC~~~~--~~~~~~p--CgH~~~C~~C~~~~~~------~~~~CP~Cr~~i~ 48 (50)
T PF13920_consen 1 EDEECPICFENP--RDVVLLP--CGHLCFCEECAERLLK------RKKKCPICRQPIE 48 (50)
T ss_dssp -HSB-TTTSSSB--SSEEEET--TCEEEEEHHHHHHHHH------TTSBBTTTTBB-S
T ss_pred CcCCCccCCccC--CceEEeC--CCChHHHHHHhHHhcc------cCCCCCcCChhhc
Confidence 457899999985 4666665 6899 99999999974 5789999999875
No 93
>PF11608 Limkain-b1: Limkain b1; InterPro: IPR024582 This entry represents a conserved domain found in limkain b1, which is a novel human autoantigen, localised to a subset of ABCD3 and PXF marked peroxisomes. Limkain b1 may be a relatively common target of human autoantibodies reactive to cytoplasmic vesicle-like structures [].; PDB: 2DIU_A.
Probab=97.15 E-value=0.0016 Score=59.58 Aligned_cols=71 Identities=27% Similarity=0.438 Sum_probs=49.2
Q ss_pred CeEEEeCCCCCCChhHHHHH-HHhhccCc-ceeEEEEeecCCCcccccCCCceEEEEEeCCHHHHHHHHHHhCCCccCCc
Q 003574 105 NLVYIVGLPLNLGDEDLLQR-REYFGQYG-KVLKVSMSRTAAGVIQQFPNNTCSVYITYSKEEEAVRCIQSVHGFVLEGK 182 (810)
Q Consensus 105 NLVYV~GLP~~iaEEDLLr~-~EyFGQYG-kI~KIvInrdk~g~~~q~~~~~gsAYVTFs~~EDA~rAI~aLDG~~LDGR 182 (810)
.+|||.|||....-..+-.+ ++++.-+| +|..|. ++.|+|.|.+++.|.+|.+-|+|..+.|+
T Consensus 3 s~L~V~NLP~~~d~~~I~~RL~qLsdNCGGkVl~v~---------------~~tAilrF~~~~~A~RA~KRmegEdVfG~ 67 (90)
T PF11608_consen 3 SLLYVSNLPTNKDPSSIKNRLRQLSDNCGGKVLSVS---------------GGTAILRFPNQEFAERAQKRMEGEDVFGN 67 (90)
T ss_dssp EEEEEES--TTS-HHHHHHHHHHHHHTTT--EEE-----------------TT-EEEEESSHHHHHHHHHHHTT--SSSS
T ss_pred cEEEEecCCCCCCHHHHHHHHHHHhhccCCEEEEEe---------------CCEEEEEeCCHHHHHHHHHhhcccccccc
Confidence 58999999999876555211 77888876 776652 24699999999999999999999999999
Q ss_pred EEEEeecC
Q 003574 183 SLKACFGT 190 (810)
Q Consensus 183 ~LRASfGT 190 (810)
.|.|+|..
T Consensus 68 kI~v~~~~ 75 (90)
T PF11608_consen 68 KISVSFSP 75 (90)
T ss_dssp --EEESS-
T ss_pred eEEEEEcC
Confidence 99999853
No 94
>KOG1457 consensus RNA binding protein (contains RRM repeats) [General function prediction only]
Probab=97.04 E-value=0.0022 Score=67.35 Aligned_cols=82 Identities=15% Similarity=0.327 Sum_probs=61.6
Q ss_pred cCeEEEeCCCCCCChhHHHHHHHhhccCcceeEEEEeecCCCcccccCCCceEEEEEeCCHHHHHHHHHHhCCCccC---
Q 003574 104 RNLVYIVGLPLNLGDEDLLQRREYFGQYGKVLKVSMSRTAAGVIQQFPNNTCSVYITYSKEEEAVRCIQSVHGFVLE--- 180 (810)
Q Consensus 104 kNLVYV~GLP~~iaEEDLLr~~EyFGQYGkI~KIvInrdk~g~~~q~~~~~gsAYVTFs~~EDA~rAI~aLDG~~LD--- 180 (810)
-+++||.|||.++...|| +-+|-.|---.--.|..+..+. + + -+..|||||.+..+|..|..+|||..+|
T Consensus 34 VRTLFVSGLP~DvKpREi---ynLFR~f~GYEgslLK~Tsk~~-~--~-~~pvaFatF~s~q~A~aamnaLNGvrFDpE~ 106 (284)
T KOG1457|consen 34 VRTLFVSGLPNDVKPREI---YNLFRRFHGYEGSLLKYTSKGD-Q--V-CKPVAFATFTSHQFALAAMNALNGVRFDPET 106 (284)
T ss_pred cceeeeccCCcccCHHHH---HHHhccCCCccceeeeeccCCC-c--c-ccceEEEEecchHHHHHHHHHhcCeeecccc
Confidence 367899999999999999 7888887444444443322211 1 1 1246899999999999999999999987
Q ss_pred CcEEEEeecCCC
Q 003574 181 GKSLKACFGTTK 192 (810)
Q Consensus 181 GR~LRASfGTTK 192 (810)
|.+|++.++...
T Consensus 107 ~stLhiElAKSN 118 (284)
T KOG1457|consen 107 GSTLHIELAKSN 118 (284)
T ss_pred CceeEeeehhcC
Confidence 788999987653
No 95
>TIGR00570 cdk7 CDK-activating kinase assembly factor MAT1. All proteins in this family for which functions are known are cyclin dependent protein kinases that are components of TFIIH, a complex that is involved in nucleotide excision repair and transcription initiation. Also known as MAT1 (menage a trois 1). This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=97.01 E-value=0.0007 Score=73.53 Aligned_cols=55 Identities=24% Similarity=0.653 Sum_probs=41.5
Q ss_pred CCCCCCcccC--CCcCCCCccccCCCchhhhhhHhHhHhhhhhccccCCCCCCCCCCcccccc
Q 003574 6 EKTCPLCAEE--MDLTDQQLKPCKCGYEICVWCWHHIMDMAEKEETEGRCPACRSPYDKEKIV 66 (810)
Q Consensus 6 d~~CPLC~Ee--lD~tD~~F~PC~CGYQIC~fC~~rI~~~a~k~~~~grCPACRr~Yde~~i~ 66 (810)
+..||+|... +...=+.+.. +||+.+|.-|..+|.. ...+.||.|++++....+.
T Consensus 3 ~~~CP~Ck~~~y~np~~kl~i~-~CGH~~C~sCv~~l~~-----~~~~~CP~C~~~lrk~~fr 59 (309)
T TIGR00570 3 DQGCPRCKTTKYRNPSLKLMVN-VCGHTLCESCVDLLFV-----RGSGSCPECDTPLRKNNFR 59 (309)
T ss_pred CCCCCcCCCCCccCcccccccC-CCCCcccHHHHHHHhc-----CCCCCCCCCCCccchhhcc
Confidence 4689999985 3322233455 9999999999999962 2457899999998877653
No 96
>PF13639 zf-RING_2: Ring finger domain; PDB: 2KIZ_A 4EPO_C 1IYM_A 2EP4_A 2ECT_A 2JRJ_A 2ECN_A 2ECM_A 3NG2_A 2EA6_A ....
Probab=97.00 E-value=0.00018 Score=56.13 Aligned_cols=44 Identities=27% Similarity=0.740 Sum_probs=34.4
Q ss_pred CCCCCcccCCCcCCCCccccCCCchhhhhhHhHhHhhhhhccccCCCCCCC
Q 003574 7 KTCPLCAEEMDLTDQQLKPCKCGYEICVWCWHHIMDMAEKEETEGRCPACR 57 (810)
Q Consensus 7 ~~CPLC~EelD~tD~~F~PC~CGYQIC~fC~~rI~~~a~k~~~~grCPACR 57 (810)
.+||||+++|+. +..+...+||+.+|.-|+...+. .+..||-||
T Consensus 1 d~C~IC~~~~~~-~~~~~~l~C~H~fh~~Ci~~~~~------~~~~CP~CR 44 (44)
T PF13639_consen 1 DECPICLEEFED-GEKVVKLPCGHVFHRSCIKEWLK------RNNSCPVCR 44 (44)
T ss_dssp -CETTTTCBHHT-TSCEEEETTSEEEEHHHHHHHHH------HSSB-TTTH
T ss_pred CCCcCCChhhcC-CCeEEEccCCCeeCHHHHHHHHH------hCCcCCccC
Confidence 379999999965 55556777999999999998864 256999997
No 97
>KOG1996 consensus mRNA splicing factor [RNA processing and modification]
Probab=96.99 E-value=0.00072 Score=73.01 Aligned_cols=60 Identities=22% Similarity=0.499 Sum_probs=50.7
Q ss_pred HHhhccCcceeEEEEeecCCCcccccCCCceEEEEEeCCHHHHHHHHHHhCCCccCCcEEEEee
Q 003574 125 REYFGQYGKVLKVSMSRTAAGVIQQFPNNTCSVYITYSKEEEAVRCIQSVHGFVLEGKSLKACF 188 (810)
Q Consensus 125 ~EyFGQYGkI~KIvInrdk~g~~~q~~~~~gsAYVTFs~~EDA~rAI~aLDG~~LDGR~LRASf 188 (810)
.|-.++||+|.+|+|.....-. - ..-..+||.|.+.++|.+|+-.|||..++||+++|+|
T Consensus 304 keEceKyg~V~~viifeip~~p---~-deavRiFveF~r~e~aiKA~VdlnGRyFGGr~v~A~F 363 (378)
T KOG1996|consen 304 KEECEKYGKVGNVIIFEIPSQP---E-DEAVRIFVEFERVESAIKAVVDLNGRYFGGRVVSACF 363 (378)
T ss_pred HHHHHhhcceeeEEEEecCCCc---c-chhheeeeeeccHHHHHHHHHhcCCceecceeeehee
Confidence 7889999999999997653221 1 2344689999999999999999999999999999997
No 98
>PLN02189 cellulose synthase
Probab=96.93 E-value=0.00042 Score=84.34 Aligned_cols=50 Identities=26% Similarity=0.893 Sum_probs=43.8
Q ss_pred CCCCCcccCCC--cCCCCccccC-CCchhhhhhHhHhHhhhhhccccCCCCCCCCCCc
Q 003574 7 KTCPLCAEEMD--LTDQQLKPCK-CGYEICVWCWHHIMDMAEKEETEGRCPACRSPYD 61 (810)
Q Consensus 7 ~~CPLC~EelD--~tD~~F~PC~-CGYQIC~fC~~rI~~~a~k~~~~grCPACRr~Yd 61 (810)
..|.+|-+++. .+...|..|. |||.+|+.||...+ .+.+..||.|+..|.
T Consensus 35 ~~C~iCgd~vg~~~~g~~fvaC~~C~fpvCr~Cyeyer-----~eg~q~CpqCkt~Y~ 87 (1040)
T PLN02189 35 QVCEICGDEIGLTVDGDLFVACNECGFPVCRPCYEYER-----REGTQNCPQCKTRYK 87 (1040)
T ss_pred ccccccccccCcCCCCCEEEeeccCCCccccchhhhhh-----hcCCccCcccCCchh
Confidence 48999999986 5566899999 99999999999876 357889999999997
No 99
>KOG0120 consensus Splicing factor U2AF, large subunit (RRM superfamily) [RNA processing and modification]
Probab=96.88 E-value=0.002 Score=73.81 Aligned_cols=67 Identities=21% Similarity=0.472 Sum_probs=54.2
Q ss_pred HHhhccCcceeEEEEeecCCCcccccCCCceEEEEEeCCHHHHHHHHHHhCCCccCCcEEEEee-cCCCC
Q 003574 125 REYFGQYGKVLKVSMSRTAAGVIQQFPNNTCSVYITYSKEEEAVRCIQSVHGFVLEGKSLKACF-GTTKY 193 (810)
Q Consensus 125 ~EyFGQYGkI~KIvInrdk~g~~~q~~~~~gsAYVTFs~~EDA~rAI~aLDG~~LDGR~LRASf-GTTKY 193 (810)
+.=+++||.|..|.|.+.-... ...+ ..|.+||.|.+.+++++|.++|.|..+.||+|.++| .--||
T Consensus 427 r~ec~k~g~v~~v~ipr~~~~~-~~~~-G~GkVFVefas~ed~qrA~~~L~GrKF~nRtVvtsYydeDkY 494 (500)
T KOG0120|consen 427 RTECAKFGAVRSVEIPRPYPDE-NPVP-GTGKVFVEFADTEDSQRAMEELTGRKFANRTVVASYYDEDKY 494 (500)
T ss_pred HHHhcccCceeEEecCCCCCCC-CcCC-CcccEEEEecChHHHHHHHHHccCceeCCcEEEEEecCHHHh
Confidence 6679999999999999873221 1122 356799999999999999999999999999999986 44455
No 100
>PF08777 RRM_3: RNA binding motif; InterPro: IPR014886 This domain is found in protein La which functions as an RNA chaperone during RNA polymerase III transcription, and can also stimulate translation initiation. It contains a five stranded beta sheet which forms an atypical RNA recognition motif []. ; PDB: 1OWX_A.
Probab=96.83 E-value=0.0025 Score=59.17 Aligned_cols=59 Identities=25% Similarity=0.440 Sum_probs=38.8
Q ss_pred CeEEEeCCCCCCChhHHHHHHHhhccCcceeEEEEeecCCCcccccCCCceEEEEEeCCHHHHHHHHHHhCCC
Q 003574 105 NLVYIVGLPLNLGDEDLLQRREYFGQYGKVLKVSMSRTAAGVIQQFPNNTCSVYITYSKEEEAVRCIQSVHGF 177 (810)
Q Consensus 105 NLVYV~GLP~~iaEEDLLr~~EyFGQYGkI~KIvInrdk~g~~~q~~~~~gsAYVTFs~~EDA~rAI~aLDG~ 177 (810)
-+|+|.|+...+.-++| ++.|.+||.|.-|.+.+.. -.|||.|.+.+.|.+|+..+.-.
T Consensus 2 ~il~~~g~~~~~~re~i---K~~f~~~g~V~yVD~~~G~-----------~~g~VRf~~~~~A~~a~~~~~~~ 60 (105)
T PF08777_consen 2 CILKFSGLGEPTSREDI---KEAFSQFGEVAYVDFSRGD-----------TEGYVRFKTPEAAQKALEKLKEA 60 (105)
T ss_dssp -EEEEEE--SS--HHHH---HHHT-SS--EEEEE--TT------------SEEEEEESS---HHHHHHHHHHT
T ss_pred eEEEEecCCCCcCHHHH---HHHHHhcCCcceEEecCCC-----------CEEEEEECCcchHHHHHHHHHhc
Confidence 36899999999999899 9999999999998887532 25799999999999999887655
No 101
>cd00162 RING RING-finger (Really Interesting New Gene) domain, a specialized type of Zn-finger of 40 to 60 residues that binds two atoms of zinc; defined by the 'cross-brace' motif C-X2-C-X(9-39)-C-X(1-3)- H-X(2-3)-(N/C/H)-X2-C-X(4-48)C-X2-C; probably involved in mediating protein-protein interactions; identified in a proteins with a wide range of functions such as viral replication, signal transduction, and development; has two variants, the C3HC4-type and a C3H2C3-type (RING-H2 finger), which have different cysteine/histidine pattern; a subset of RINGs are associated with B-Boxes (C-X2-H-X7-C-X7-C-X2-C-H-X2-H)
Probab=96.76 E-value=0.0014 Score=48.59 Aligned_cols=44 Identities=32% Similarity=0.858 Sum_probs=33.4
Q ss_pred CCCCcccCCCcCCCCccccCCCchhhhhhHhHhHhhhhhccccCCCCCCCCC
Q 003574 8 TCPLCAEEMDLTDQQLKPCKCGYEICVWCWHHIMDMAEKEETEGRCPACRSP 59 (810)
Q Consensus 8 ~CPLC~EelD~tD~~F~PC~CGYQIC~fC~~rI~~~a~k~~~~grCPACRr~ 59 (810)
+|++|.+.+. ..+..-+||+.+|.-|+...... ...+||.||++
T Consensus 1 ~C~iC~~~~~---~~~~~~~C~H~~c~~C~~~~~~~-----~~~~Cp~C~~~ 44 (45)
T cd00162 1 ECPICLEEFR---EPVVLLPCGHVFCRSCIDKWLKS-----GKNTCPLCRTP 44 (45)
T ss_pred CCCcCchhhh---CceEecCCCChhcHHHHHHHHHh-----CcCCCCCCCCc
Confidence 5999999982 23333349999999999988641 46789999985
No 102
>PF05172 Nup35_RRM: Nup53/35/40-type RNA recognition motif; InterPro: IPR007846 The MPPN (Mitotic PhosphoProtein N end) family is uncharacterised however it probably plays a role in the cell cycle because the family includes mitotic phosphoproteins O13026 from SWISSPROT []. This family also includes Q05166 from SWISSPROT a suppressor of thermosensitive mutations in the DNA polymerase delta gene, Pol III []. The conserved central region appears to be distantly related to the RNA-binding region RNP-1 (RNA recognition motif, IPR000504 from INTERPRO), suggesting an RNA binding function for this protein.; PDB: 1WWH_C 3P3D_A.
Probab=96.67 E-value=0.0017 Score=60.24 Aligned_cols=76 Identities=24% Similarity=0.471 Sum_probs=49.4
Q ss_pred cCeEEEeCCCCCCChhHHHHHHHhhccCcceeEEE-EeecCCCcc-cccCCCceEEEEEeCCHHHHHHHHHHhCCCccCC
Q 003574 104 RNLVYIVGLPLNLGDEDLLQRREYFGQYGKVLKVS-MSRTAAGVI-QQFPNNTCSVYITYSKEEEAVRCIQSVHGFVLEG 181 (810)
Q Consensus 104 kNLVYV~GLP~~iaEEDLLr~~EyFGQYGkI~KIv-Inrdk~g~~-~q~~~~~gsAYVTFs~~EDA~rAI~aLDG~~LDG 181 (810)
..-|.|-|.|+..+. .+| ++|++||.|++.+ +.++..+.. .+.+..+.-.+|+|.++.+|.+|++ -||..+.|
T Consensus 6 ~~wVtVFGfp~~~~~-~Vl---~~F~~~G~Ile~~~~~~~~~~~~~~~~~~~~NWi~I~Y~~~~~A~rAL~-~NG~i~~g 80 (100)
T PF05172_consen 6 ETWVTVFGFPPSASN-QVL---RHFSSFGTILEHFEVLRSSSGINPYPIPSGGNWIHITYDNPLSAQRALQ-KNGTIFSG 80 (100)
T ss_dssp CCEEEEE---GGGHH-HHH---HHHHCCS-EECEEGGG----------E-CCTTEEEEEESSHHHHHHHHT-TTTEEETT
T ss_pred CeEEEEEccCHHHHH-HHH---HHHHhcceEEEeecccccccccccccCCCCCCEEEEECCCHHHHHHHHH-hCCeEEcC
Confidence 456899999999765 664 8999999999876 222211100 0112334568999999999999988 59999998
Q ss_pred cEE
Q 003574 182 KSL 184 (810)
Q Consensus 182 R~L 184 (810)
..|
T Consensus 81 ~~m 83 (100)
T PF05172_consen 81 SLM 83 (100)
T ss_dssp CEE
T ss_pred cEE
Confidence 765
No 103
>PLN03208 E3 ubiquitin-protein ligase RMA2; Provisional
Probab=96.66 E-value=0.0019 Score=66.34 Aligned_cols=60 Identities=23% Similarity=0.613 Sum_probs=42.7
Q ss_pred ccCCCCCCcccCCCcCCCCccccCCCchhhhhhHhHhHhhhh----------hccccCCCCCCCCCCccccccc
Q 003574 4 EGEKTCPLCAEEMDLTDQQLKPCKCGYEICVWCWHHIMDMAE----------KEETEGRCPACRSPYDKEKIVG 67 (810)
Q Consensus 4 d~d~~CPLC~EelD~tD~~F~PC~CGYQIC~fC~~rI~~~a~----------k~~~~grCPACRr~Yde~~i~~ 67 (810)
+++.+||||.+.+ +|... -+||+..|+-|..+...... ......+||-||.++....++.
T Consensus 16 ~~~~~CpICld~~--~dPVv--T~CGH~FC~~CI~~wl~~s~~s~~~~~~~~~~k~~~~CPvCR~~Is~~~LvP 85 (193)
T PLN03208 16 GGDFDCNICLDQV--RDPVV--TLCGHLFCWPCIHKWTYASNNSRQRVDQYDHKREPPKCPVCKSDVSEATLVP 85 (193)
T ss_pred CCccCCccCCCcC--CCcEE--cCCCchhHHHHHHHHHHhccccccccccccccCCCCcCCCCCCcCChhcEEE
Confidence 3557999999987 45544 36999999999987653210 0123468999999998877653
No 104
>PHA02929 N1R/p28-like protein; Provisional
Probab=96.57 E-value=0.002 Score=67.92 Aligned_cols=52 Identities=23% Similarity=0.588 Sum_probs=39.3
Q ss_pred ccCCCCCCcccCCCcCCC----CccccCCCchhhhhhHhHhHhhhhhccccCCCCCCCCCCc
Q 003574 4 EGEKTCPLCAEEMDLTDQ----QLKPCKCGYEICVWCWHHIMDMAEKEETEGRCPACRSPYD 61 (810)
Q Consensus 4 d~d~~CPLC~EelD~tD~----~F~PC~CGYQIC~fC~~rI~~~a~k~~~~grCPACRr~Yd 61 (810)
.++.+||+|+|++..... --...+||+..|.-|...-+. ....||-||+++.
T Consensus 172 ~~~~eC~ICle~~~~~~~~~~~~~vl~~C~H~FC~~CI~~Wl~------~~~tCPlCR~~~~ 227 (238)
T PHA02929 172 SKDKECAICMEKVYDKEIKNMYFGILSNCNHVFCIECIDIWKK------EKNTCPVCRTPFI 227 (238)
T ss_pred CCCCCCccCCcccccCccccccceecCCCCCcccHHHHHHHHh------cCCCCCCCCCEee
Confidence 346899999999753321 124568999999999988753 4678999999765
No 105
>PLN02436 cellulose synthase A
Probab=96.53 E-value=0.0012 Score=80.76 Aligned_cols=50 Identities=26% Similarity=0.886 Sum_probs=43.5
Q ss_pred CCCCCcccCC--CcCCCCccccC-CCchhhhhhHhHhHhhhhhccccCCCCCCCCCCc
Q 003574 7 KTCPLCAEEM--DLTDQQLKPCK-CGYEICVWCWHHIMDMAEKEETEGRCPACRSPYD 61 (810)
Q Consensus 7 ~~CPLC~Eel--D~tD~~F~PC~-CGYQIC~fC~~rI~~~a~k~~~~grCPACRr~Yd 61 (810)
..|.+|-+++ +.+-..|..|. |||.+|+.||...+ .+.+..||.|+..|.
T Consensus 37 ~iCqICGD~Vg~t~dGe~FVACn~C~fpvCr~Cyeyer-----~eg~~~Cpqckt~Y~ 89 (1094)
T PLN02436 37 QTCQICGDEIELTVDGEPFVACNECAFPVCRPCYEYER-----REGNQACPQCKTRYK 89 (1094)
T ss_pred ccccccccccCcCCCCCEEEeeccCCCccccchhhhhh-----hcCCccCcccCCchh
Confidence 3899999998 55556899999 99999999999876 357889999999997
No 106
>KOG0120 consensus Splicing factor U2AF, large subunit (RRM superfamily) [RNA processing and modification]
Probab=96.46 E-value=0.0021 Score=73.69 Aligned_cols=84 Identities=19% Similarity=0.330 Sum_probs=73.7
Q ss_pred cccccCeEEEeCCCCCCChhHHHHHHHhhccCcceeEEEEeecCCCcccccCCCceEEEEEeCCHHHHHHHHHHhCCCcc
Q 003574 100 RVIQRNLVYIVGLPLNLGDEDLLQRREYFGQYGKVLKVSMSRTAAGVIQQFPNNTCSVYITYSKEEEAVRCIQSVHGFVL 179 (810)
Q Consensus 100 RVIQkNLVYV~GLP~~iaEEDLLr~~EyFGQYGkI~KIvInrdk~g~~~q~~~~~gsAYVTFs~~EDA~rAI~aLDG~~L 179 (810)
-..+.+.+||+|||..+.+.++ .|+.+-||.++-..+.++..++ ..+++||-.|.+.-.+..||..|||..+
T Consensus 285 ~~~~~~ki~v~~lp~~l~~~q~---~Ell~~fg~lk~f~lv~d~~~g-----~skg~af~ey~dpsvtd~A~agLnGm~l 356 (500)
T KOG0120|consen 285 VPDSPNKIFVGGLPLYLTEDQV---KELLDSFGPLKAFRLVKDSATG-----NSKGFAFCEYCDPSVTDQAIAGLNGMQL 356 (500)
T ss_pred cccccchhhhccCcCccCHHHH---HHHHHhcccchhheeecccccc-----cccceeeeeeeCCcchhhhhcccchhhh
Confidence 4667889999999999999998 7999999999998888876653 3567899999999999999999999999
Q ss_pred CCcEEEEeecCC
Q 003574 180 EGKSLKACFGTT 191 (810)
Q Consensus 180 DGR~LRASfGTT 191 (810)
.++.|.|..+..
T Consensus 357 gd~~lvvq~A~~ 368 (500)
T KOG0120|consen 357 GDKKLVVQRAIV 368 (500)
T ss_pred cCceeEeehhhc
Confidence 999999887543
No 107
>PF14605 Nup35_RRM_2: Nup53/35/40-type RNA recognition motif
Probab=96.40 E-value=0.0051 Score=50.75 Aligned_cols=52 Identities=21% Similarity=0.615 Sum_probs=41.9
Q ss_pred CeEEEeCCCCCCChhHHHHHHHhhccCcceeEEEEeecCCCcccccCCCceEEEEEeCCHHHHHHHH
Q 003574 105 NLVYIVGLPLNLGDEDLLQRREYFGQYGKVLKVSMSRTAAGVIQQFPNNTCSVYITYSKEEEAVRCI 171 (810)
Q Consensus 105 NLVYV~GLP~~iaEEDLLr~~EyFGQYGkI~KIvInrdk~g~~~q~~~~~gsAYVTFs~~EDA~rAI 171 (810)
.-|=|.|.++...+ ++| ++|.+||+|.++.+... +-.+||+|.+..+|++|+
T Consensus 2 ~wI~V~Gf~~~~~~-~vl---~~F~~fGeI~~~~~~~~-----------~~~~~l~y~~~~~ae~Al 53 (53)
T PF14605_consen 2 TWISVSGFPPDLAE-EVL---EHFASFGEIVDIYVPES-----------TNWMYLKYKSRKDAEKAL 53 (53)
T ss_pred cEEEEEeECchHHH-HHH---HHHHhcCCEEEEEcCCC-----------CcEEEEEECCHHHHHhhC
Confidence 45779999988765 663 69999999999888621 236899999999999984
No 108
>PF04059 RRM_2: RNA recognition motif 2; InterPro: IPR007201 This RNA recognition motif 2 is found in Meiosis protein mei2. It is found C-terminal to the RNA-binding region RNP-1 (IPR000504 from INTERPRO).
Probab=96.36 E-value=0.029 Score=52.06 Aligned_cols=82 Identities=20% Similarity=0.248 Sum_probs=63.3
Q ss_pred cCeEEEeCCCCCCChhHHHHH-HHhhccCcceeEEEEeecCCCcccccCCCceEEEEEeCCHHHHHHHHHHhCCCccC--
Q 003574 104 RNLVYIVGLPLNLGDEDLLQR-REYFGQYGKVLKVSMSRTAAGVIQQFPNNTCSVYITYSKEEEAVRCIQSVHGFVLE-- 180 (810)
Q Consensus 104 kNLVYV~GLP~~iaEEDLLr~-~EyFGQYGkI~KIvInrdk~g~~~q~~~~~gsAYVTFs~~EDA~rAI~aLDG~~LD-- 180 (810)
|.+|-|.|||-+++.++|+.- .+.| .|+.--+.+..|..+. ...|+|||.|.+.+.|.+=.+..+|....
T Consensus 1 RTTvMirNIPn~~t~~~L~~~l~~~~--~g~yDF~YLPiDf~~~-----~N~GYAFVNf~~~~~~~~F~~~f~g~~w~~~ 73 (97)
T PF04059_consen 1 RTTVMIRNIPNKYTQEMLIQILDEHF--KGKYDFFYLPIDFKNK-----CNLGYAFVNFTSPQAAIRFYKAFNGKKWPNF 73 (97)
T ss_pred CeeEEEecCCCCCCHHHHHHHHHHhc--cCcceEEEeeeeccCC-----CceEEEEEEcCCHHHHHHHHHHHcCCccccC
Confidence 578999999999999888542 2333 4676777777775443 35779999999999999999999999875
Q ss_pred --CcEEEEeecCCC
Q 003574 181 --GKSLKACFGTTK 192 (810)
Q Consensus 181 --GR~LRASfGTTK 192 (810)
.|+..++||...
T Consensus 74 ~s~Kvc~i~yAriQ 87 (97)
T PF04059_consen 74 NSKKVCEISYARIQ 87 (97)
T ss_pred CCCcEEEEehhHhh
Confidence 467777777653
No 109
>KOG3152 consensus TBP-binding protein, activator of basal transcription (contains rrm motif) [Transcription]
Probab=96.22 E-value=0.0018 Score=68.80 Aligned_cols=78 Identities=19% Similarity=0.307 Sum_probs=60.4
Q ss_pred ccCeEEEeCCCCCCChhHHHHHHHhhccCcceeEEEEeecCCCcccc------cCCCce-EEEEEeCCHHHHHHHHHHhC
Q 003574 103 QRNLVYIVGLPLNLGDEDLLQRREYFGQYGKVLKVSMSRTAAGVIQQ------FPNNTC-SVYITYSKEEEAVRCIQSVH 175 (810)
Q Consensus 103 QkNLVYV~GLP~~iaEEDLLr~~EyFGQYGkI~KIvInrdk~g~~~q------~~~~~g-sAYVTFs~~EDA~rAI~aLD 175 (810)
....||+++||+.+...-| ++||++||.|=.|.+.........+ .+...+ -++|.|.++..|.++...||
T Consensus 73 k~GVvylS~IPp~m~~~rl---Reil~~yGeVGRvylqpE~~s~~~~r~~~~~n~~~~y~EGWvEF~~KrvAK~iAe~Ln 149 (278)
T KOG3152|consen 73 KTGVVYLSNIPPYMDPVRL---REILSQYGEVGRVYLQPEDDSKRAARKRKGGNYKKLYSEGWVEFISKRVAKRIAELLN 149 (278)
T ss_pred cceEEEeccCCCccCHHHH---HHHHHhccccceEEecchhhHHHHHHhhcCCCccccchhHHHHHHHHHHHHHHHHHhC
Confidence 3478999999999988777 9999999999999997644320000 000111 35899999999999999999
Q ss_pred CCccCCcE
Q 003574 176 GFVLEGKS 183 (810)
Q Consensus 176 G~~LDGR~ 183 (810)
|.+|+|+.
T Consensus 150 n~~Iggkk 157 (278)
T KOG3152|consen 150 NTPIGGKK 157 (278)
T ss_pred CCccCCCC
Confidence 99999975
No 110
>KOG4211 consensus Splicing factor hnRNP-F and related RNA-binding proteins [RNA processing and modification]
Probab=96.20 E-value=0.031 Score=63.98 Aligned_cols=82 Identities=12% Similarity=0.298 Sum_probs=66.0
Q ss_pred eEEEeCCCCCCChhHHHHHHHhhccCcceeEEEEeecCCCcccccCCCceEEEEEeCCHHHHHHHHHHhCCCccCCcEEE
Q 003574 106 LVYIVGLPLNLGDEDLLQRREYFGQYGKVLKVSMSRTAAGVIQQFPNNTCSVYITYSKEEEAVRCIQSVHGFVLEGKSLK 185 (810)
Q Consensus 106 LVYV~GLP~~iaEEDLLr~~EyFGQYGkI~KIvInrdk~g~~~q~~~~~gsAYVTFs~~EDA~rAI~aLDG~~LDGR~LR 185 (810)
.|-+.||||..+++|| .+||+-- .|..+++.++.. .+++-|||.|..+||+.+|++ .|-..+..|.|.
T Consensus 12 ~vr~rGLPwsat~~ei---~~Ff~~~-~I~~~~~~r~~G-------r~sGeA~Ve~~seedv~~Alk-kdR~~mg~RYIE 79 (510)
T KOG4211|consen 12 EVRLRGLPWSATEKEI---LDFFSNC-GIENLEIPRRNG-------RPSGEAYVEFTSEEDVEKALK-KDRESMGHRYIE 79 (510)
T ss_pred EEEecCCCccccHHHH---HHHHhcC-ceeEEEEeccCC-------CcCcceEEEeechHHHHHHHH-hhHHHhCCceEE
Confidence 5678899999999999 6999998 588888877532 357789999999999999987 588889999999
Q ss_pred EeecCCCCcccccC
Q 003574 186 ACFGTTKYCHAWLR 199 (810)
Q Consensus 186 ASfGTTKYCs~FLR 199 (810)
|--++.+-.-..+|
T Consensus 80 Vf~~~~~e~d~~~~ 93 (510)
T KOG4211|consen 80 VFTAGGAEADWVMR 93 (510)
T ss_pred EEccCCcccccccc
Confidence 87766555444443
No 111
>KOG1190 consensus Polypyrimidine tract-binding protein [RNA processing and modification]
Probab=96.14 E-value=0.0098 Score=66.78 Aligned_cols=71 Identities=23% Similarity=0.349 Sum_probs=56.9
Q ss_pred EEEeCCCCCCChhHHHHHHHhhccCcceeEEEEeecCCCcccccCCCceEEEEEeCCHHHHHHHHHHhCCCcc-CC-cEE
Q 003574 107 VYIVGLPLNLGDEDLLQRREYFGQYGKVLKVSMSRTAAGVIQQFPNNTCSVYITYSKEEEAVRCIQSVHGFVL-EG-KSL 184 (810)
Q Consensus 107 VYV~GLP~~iaEEDLLr~~EyFGQYGkI~KIvInrdk~g~~~q~~~~~gsAYVTFs~~EDA~rAI~aLDG~~L-DG-R~L 184 (810)
+.|.++-+.++- |+| +++|.+||.|.||+-... +.++.|.|.|.+.+.|..|-.+|||.-| +| ..|
T Consensus 153 ~iie~m~ypVsl-DVL--HqvFS~fG~VlKIiTF~K---------nn~FQALvQy~d~~sAq~AK~aLdGqnIyngcCtL 220 (492)
T KOG1190|consen 153 TIIENMFYPVSL-DVL--HQVFSKFGFVLKIITFTK---------NNGFQALVQYTDAVSAQAAKLALDGQNIYNGCCTL 220 (492)
T ss_pred EEeccceeeeEH-HHH--HHHHhhcceeEEEEEEec---------ccchhhhhhccchhhHHHHHHhccCCcccCceeEE
Confidence 455566666666 556 999999999999986543 3467899999999999999999999854 66 579
Q ss_pred EEeec
Q 003574 185 KACFG 189 (810)
Q Consensus 185 RASfG 189 (810)
|+.|.
T Consensus 221 rId~S 225 (492)
T KOG1190|consen 221 RIDFS 225 (492)
T ss_pred Eeehh
Confidence 99983
No 112
>KOG2314 consensus Translation initiation factor 3, subunit b (eIF-3b) [Translation, ribosomal structure and biogenesis]
Probab=96.06 E-value=0.011 Score=68.41 Aligned_cols=77 Identities=17% Similarity=0.332 Sum_probs=60.3
Q ss_pred CeEEEeCCCCCCCh-hHHHHH--HHhhccCcceeEEEEeecCCCcccccCCCceEEEEEeCCHHHHHHHHHHhCCCccCC
Q 003574 105 NLVYIVGLPLNLGD-EDLLQR--REYFGQYGKVLKVSMSRTAAGVIQQFPNNTCSVYITYSKEEEAVRCIQSVHGFVLEG 181 (810)
Q Consensus 105 NLVYV~GLP~~iaE-EDLLr~--~EyFGQYGkI~KIvInrdk~g~~~q~~~~~gsAYVTFs~~EDA~rAI~aLDG~~LDG 181 (810)
+.|+|-|+|---.. -+.||. ..+|++||+|.++.+..+..++ -.|++|+.|.+..+|..|++.+||..||-
T Consensus 59 ~vVvv~g~PvV~~~rl~klk~vl~kvfsk~gk~vn~~~P~~e~gg------tkG~lf~E~~~~~~A~~aVK~l~G~~ldk 132 (698)
T KOG2314|consen 59 SVVVVDGAPVVGPARLEKLKKVLTKVFSKAGKIVNMYYPIDEEGG------TKGYLFVEYASMRDAKKAVKSLNGKRLDK 132 (698)
T ss_pred eEEEECCCcccChhHHHHHHHHHHHHHHhhccccceeeccCccCC------eeeEEEEEecChhhHHHHHHhcccceecc
Confidence 67888888743221 133443 7899999999999999877665 35789999999999999999999999974
Q ss_pred -cEEEEe
Q 003574 182 -KSLKAC 187 (810)
Q Consensus 182 -R~LRAS 187 (810)
..+.|.
T Consensus 133 nHtf~v~ 139 (698)
T KOG2314|consen 133 NHTFFVR 139 (698)
T ss_pred cceEEee
Confidence 555554
No 113
>KOG4210 consensus Nuclear localization sequence binding protein [Transcription]
Probab=95.99 E-value=0.0037 Score=67.16 Aligned_cols=78 Identities=15% Similarity=0.305 Sum_probs=68.5
Q ss_pred eEE-EeCCCCCCChhHHHHHHHhhccCcceeEEEEeecCCCcccccCCCceEEEEEeCCHHHHHHHHHHhCCCccCCcEE
Q 003574 106 LVY-IVGLPLNLGDEDLLQRREYFGQYGKVLKVSMSRTAAGVIQQFPNNTCSVYITYSKEEEAVRCIQSVHGFVLEGKSL 184 (810)
Q Consensus 106 LVY-V~GLP~~iaEEDLLr~~EyFGQYGkI~KIvInrdk~g~~~q~~~~~gsAYVTFs~~EDA~rAI~aLDG~~LDGR~L 184 (810)
++| |++|+..+++++| +++|+..|.|+.|.+..+..+. ...++|||.|....++..|+.. .+..++|+++
T Consensus 186 ~~~~~~~~~f~~~~d~~---~~~~~~~~~i~~~r~~~~~~s~-----~~kg~a~~~~~~~~~~~~~~~~-~~~~~~~~~~ 256 (285)
T KOG4210|consen 186 TIFFVGELDFSLTRDDL---KEHFVSSGEITSVRLPTDEESG-----DSKGFAYVDFSAGNSKKLALND-QTRSIGGRPL 256 (285)
T ss_pred cceeecccccccchHHH---hhhccCcCcceeeccCCCCCcc-----chhhhhhhhhhhchhHHHHhhc-ccCcccCccc
Confidence 355 9999999999888 7999999999999998776654 3567899999999999999998 8889999999
Q ss_pred EEeecCCC
Q 003574 185 KACFGTTK 192 (810)
Q Consensus 185 RASfGTTK 192 (810)
++.++...
T Consensus 257 ~~~~~~~~ 264 (285)
T KOG4210|consen 257 RLEEDEPR 264 (285)
T ss_pred ccccCCCC
Confidence 99998765
No 114
>KOG1456 consensus Heterogeneous nuclear ribonucleoprotein L (contains RRM repeats) [RNA processing and modification]
Probab=95.68 E-value=0.07 Score=59.75 Aligned_cols=77 Identities=19% Similarity=0.309 Sum_probs=64.4
Q ss_pred ccCeEEEeCCCCCCChhHHHHHHHhhccCcceeEEEEeecCCCcccccCCCceEEEEEeCCHHHHHHHHHHhCCCccCCc
Q 003574 103 QRNLVYIVGLPLNLGDEDLLQRREYFGQYGKVLKVSMSRTAAGVIQQFPNNTCSVYITYSKEEEAVRCIQSVHGFVLEGK 182 (810)
Q Consensus 103 QkNLVYV~GLP~~iaEEDLLr~~EyFGQYGkI~KIvInrdk~g~~~q~~~~~gsAYVTFs~~EDA~rAI~aLDG~~LDGR 182 (810)
+...+.|.||...--.-|.| ..+|-+||.|.+|...+++. +.|-|.+.+.++.++||..||+..+.|.
T Consensus 286 ~g~VmMVyGLdh~k~N~drl--FNl~ClYGNV~rvkFmkTk~----------gtamVemgd~~aver~v~hLnn~~lfG~ 353 (494)
T KOG1456|consen 286 PGCVMMVYGLDHGKMNCDRL--FNLFCLYGNVERVKFMKTKP----------GTAMVEMGDAYAVERAVTHLNNIPLFGG 353 (494)
T ss_pred CCcEEEEEeccccccchhhh--hhhhhhcCceeeEEEeeccc----------ceeEEEcCcHHHHHHHHHHhccCccccc
Confidence 45578999997654444544 78999999999999998764 3589999999999999999999999999
Q ss_pred EEEEeecCC
Q 003574 183 SLKACFGTT 191 (810)
Q Consensus 183 ~LRASfGTT 191 (810)
+|.+++...
T Consensus 354 kl~v~~SkQ 362 (494)
T KOG1456|consen 354 KLNVCVSKQ 362 (494)
T ss_pred eEEEeeccc
Confidence 999987543
No 115
>KOG0226 consensus RNA-binding proteins [General function prediction only]
Probab=95.64 E-value=0.011 Score=63.27 Aligned_cols=76 Identities=13% Similarity=0.223 Sum_probs=64.7
Q ss_pred CeEEEeCCCCCCChhHHHHHHHhhccCcceeEEEEeecCCCcccccCCCceEEEEEeCCHHHHHHHHHHhCCCccCCcEE
Q 003574 105 NLVYIVGLPLNLGDEDLLQRREYFGQYGKVLKVSMSRTAAGVIQQFPNNTCSVYITYSKEEEAVRCIQSVHGFVLEGKSL 184 (810)
Q Consensus 105 NLVYV~GLP~~iaEEDLLr~~EyFGQYGkI~KIvInrdk~g~~~q~~~~~gsAYVTFs~~EDA~rAI~aLDG~~LDGR~L 184 (810)
-.||-+-|.-+++++-| ...|.+|=.-.+..+.+++.++ ...|++||.|.+.+|+.+|+..|||..++.|+|
T Consensus 191 fRIfcgdlgNevnd~vl---~raf~Kfpsf~~akviRdkRTg-----KSkgygfVSf~~pad~~rAmrem~gkyVgsrpi 262 (290)
T KOG0226|consen 191 FRIFCGDLGNEVNDDVL---ARAFKKFPSFQKAKVIRDKRTG-----KSKGYGFVSFRDPADYVRAMREMNGKYVGSRPI 262 (290)
T ss_pred ceeecccccccccHHHH---HHHHHhccchhhcccccccccc-----ccccceeeeecCHHHHHHHHHhhcccccccchh
Confidence 35799999888887544 6799999999999999988765 246678999999999999999999999999998
Q ss_pred EEee
Q 003574 185 KACF 188 (810)
Q Consensus 185 RASf 188 (810)
++.-
T Consensus 263 klRk 266 (290)
T KOG0226|consen 263 KLRK 266 (290)
T ss_pred Hhhh
Confidence 8653
No 116
>smart00504 Ubox Modified RING finger domain. Modified RING finger domain, without the full complement of Zn2+-binding ligands. Probable involvement in E2-dependent ubiquitination.
Probab=95.56 E-value=0.014 Score=47.85 Aligned_cols=50 Identities=20% Similarity=0.333 Sum_probs=38.6
Q ss_pred CCCCCcccCCCcCCCCccccCCCchhhhhhHhHhHhhhhhccccCCCCCCCCCCcccccc
Q 003574 7 KTCPLCAEEMDLTDQQLKPCKCGYEICVWCWHHIMDMAEKEETEGRCPACRSPYDKEKIV 66 (810)
Q Consensus 7 ~~CPLC~EelD~tD~~F~PC~CGYQIC~fC~~rI~~~a~k~~~~grCPACRr~Yde~~i~ 66 (810)
-.||+|.+.|+ |.-.. +||+-+|+-|+..... .++.||-|++++..+.+.
T Consensus 2 ~~Cpi~~~~~~--~Pv~~--~~G~v~~~~~i~~~~~------~~~~cP~~~~~~~~~~l~ 51 (63)
T smart00504 2 FLCPISLEVMK--DPVIL--PSGQTYERRAIEKWLL------SHGTDPVTGQPLTHEDLI 51 (63)
T ss_pred cCCcCCCCcCC--CCEEC--CCCCEEeHHHHHHHHH------HCCCCCCCcCCCChhhce
Confidence 57999999986 44443 6799999999988863 168999999998665543
No 117
>KOG2177 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=95.45 E-value=0.0077 Score=58.67 Aligned_cols=48 Identities=31% Similarity=0.696 Sum_probs=39.1
Q ss_pred ccCCCCCCcccCCCcCCCCccccCCCchhhhhhHhHhHhhhhhccccCCCCCCCCCCc
Q 003574 4 EGEKTCPLCAEEMDLTDQQLKPCKCGYEICVWCWHHIMDMAEKEETEGRCPACRSPYD 61 (810)
Q Consensus 4 d~d~~CPLC~EelD~tD~~F~PC~CGYQIC~fC~~rI~~~a~k~~~~grCPACRr~Yd 61 (810)
+++..||+|.+.|... .--+||+-+|..|...+.. ..-+||.||.+|.
T Consensus 11 ~~~~~C~iC~~~~~~p----~~l~C~H~~c~~C~~~~~~------~~~~Cp~cr~~~~ 58 (386)
T KOG2177|consen 11 QEELTCPICLEYFREP----VLLPCGHNFCRACLTRSWE------GPLSCPVCRPPSR 58 (386)
T ss_pred cccccChhhHHHhhcC----ccccccchHhHHHHHHhcC------CCcCCcccCCchh
Confidence 4678999999999855 5667999999999999974 4578999995333
No 118
>PF14634 zf-RING_5: zinc-RING finger domain
Probab=95.43 E-value=0.016 Score=45.65 Aligned_cols=44 Identities=25% Similarity=0.722 Sum_probs=36.6
Q ss_pred CCCCcccCCCcCCCCccccCCCchhhhhhHhHhHhhhhhccccCCCCCCCC
Q 003574 8 TCPLCAEEMDLTDQQLKPCKCGYEICVWCWHHIMDMAEKEETEGRCPACRS 58 (810)
Q Consensus 8 ~CPLC~EelD~tD~~F~PC~CGYQIC~fC~~rI~~~a~k~~~~grCPACRr 58 (810)
.|++|.+++ ..+..++-=.||+.+|.-|+..+. .....||.||+
T Consensus 1 ~C~~C~~~~-~~~~~~~l~~CgH~~C~~C~~~~~------~~~~~CP~C~k 44 (44)
T PF14634_consen 1 HCNICFEKY-SEERRPRLTSCGHIFCEKCLKKLK------GKSVKCPICRK 44 (44)
T ss_pred CCcCcCccc-cCCCCeEEcccCCHHHHHHHHhhc------CCCCCCcCCCC
Confidence 499999999 344568888999999999999985 34788999986
No 119
>KOG0106 consensus Alternative splicing factor SRp55/B52/SRp75 (RRM superfamily) [RNA processing and modification]
Probab=95.40 E-value=0.009 Score=62.36 Aligned_cols=75 Identities=23% Similarity=0.374 Sum_probs=60.2
Q ss_pred ccccccccc--CeEEEeCCCCCCChhHHHHHHHhhccCcceeEEEEeecCCCcccccCCCceEEEEEeCCHHHHHHHHHH
Q 003574 96 LSSVRVIQR--NLVYIVGLPLNLGDEDLLQRREYFGQYGKVLKVSMSRTAAGVIQQFPNNTCSVYITYSKEEEAVRCIQS 173 (810)
Q Consensus 96 LanvRVIQk--NLVYV~GLP~~iaEEDLLr~~EyFGQYGkI~KIvInrdk~g~~~q~~~~~gsAYVTFs~~EDA~rAI~a 173 (810)
+...++.-+ -.+.|-+++.++..-+| .++|++||++...++. ...++|.|+..+||.+||..
T Consensus 89 ~~~~~~p~~s~~r~~~~~~~~r~~~qdl---~d~~~~~g~~~~~~~~-------------~~~~~v~Fs~~~da~ra~~~ 152 (216)
T KOG0106|consen 89 SRRYRPPSRTHFRLIVRNLSLRVSWQDL---KDHFRPAGEVTYVDAR-------------RNFAFVEFSEQEDAKRALEK 152 (216)
T ss_pred hhccCCcccccceeeeccchhhhhHHHH---hhhhcccCCCchhhhh-------------ccccceeehhhhhhhhcchh
Confidence 444454222 35677888888888889 9999999999554442 13579999999999999999
Q ss_pred hCCCccCCcEEEE
Q 003574 174 VHGFVLEGKSLKA 186 (810)
Q Consensus 174 LDG~~LDGR~LRA 186 (810)
|+|..+.|+.|++
T Consensus 153 l~~~~~~~~~l~~ 165 (216)
T KOG0106|consen 153 LDGKKLNGRRISV 165 (216)
T ss_pred ccchhhcCceeee
Confidence 9999999999998
No 120
>PF13923 zf-C3HC4_2: Zinc finger, C3HC4 type (RING finger); PDB: 3HCU_A 2ECI_A 2JMD_A 3HCS_B 3HCT_A 3ZTG_A 2YUR_A 3L11_A.
Probab=95.28 E-value=0.0092 Score=45.70 Aligned_cols=39 Identities=31% Similarity=0.980 Sum_probs=29.9
Q ss_pred CCCcccCCCcCCCCccccCCCchhhhhhHhHhHhhhhhccccCCCCCC
Q 003574 9 CPLCAEEMDLTDQQLKPCKCGYEICVWCWHHIMDMAEKEETEGRCPAC 56 (810)
Q Consensus 9 CPLC~EelD~tD~~F~PC~CGYQIC~fC~~rI~~~a~k~~~~grCPAC 56 (810)
||+|.+.+. | .+.--+||+-+|.-||.+.++ . +.+||.|
T Consensus 1 C~iC~~~~~--~-~~~~~~CGH~fC~~C~~~~~~-----~-~~~CP~C 39 (39)
T PF13923_consen 1 CPICLDELR--D-PVVVTPCGHSFCKECIEKYLE-----K-NPKCPVC 39 (39)
T ss_dssp ETTTTSB-S--S-EEEECTTSEEEEHHHHHHHHH-----C-TSB-TTT
T ss_pred CCCCCCccc--C-cCEECCCCCchhHHHHHHHHH-----C-cCCCcCC
Confidence 899999885 2 445578999999999999874 2 5899988
No 121
>KOG0320 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=95.25 E-value=0.013 Score=59.71 Aligned_cols=52 Identities=23% Similarity=0.740 Sum_probs=41.4
Q ss_pred CCCCCCcccCCCcCCCCccccCCCchhhhhhHhHhHhhhhhccccCCCCCCCCCCccccc
Q 003574 6 EKTCPLCAEEMDLTDQQLKPCKCGYEICVWCWHHIMDMAEKEETEGRCPACRSPYDKEKI 65 (810)
Q Consensus 6 d~~CPLC~EelD~tD~~F~PC~CGYQIC~fC~~rI~~~a~k~~~~grCPACRr~Yde~~i 65 (810)
-..||+||+.+. .+.-+-=+||+-+|.-|....+. ....||-||+..++..+
T Consensus 131 ~~~CPiCl~~~s--ek~~vsTkCGHvFC~~Cik~alk------~~~~CP~C~kkIt~k~~ 182 (187)
T KOG0320|consen 131 TYKCPICLDSVS--EKVPVSTKCGHVFCSQCIKDALK------NTNKCPTCRKKITHKQF 182 (187)
T ss_pred ccCCCceecchh--hccccccccchhHHHHHHHHHHH------hCCCCCCcccccchhhh
Confidence 357999999874 44446678999999999998874 46789999997776655
No 122
>PLN02248 cellulose synthase-like protein
Probab=95.17 E-value=0.02 Score=70.71 Aligned_cols=50 Identities=36% Similarity=1.046 Sum_probs=37.4
Q ss_pred CCC--CCcccCC--CcCCCCccccCCCchhhhhhHhHhHhhhhhccccCCCCCCCCCCcc
Q 003574 7 KTC--PLCAEEM--DLTDQQLKPCKCGYEICVWCWHHIMDMAEKEETEGRCPACRSPYDK 62 (810)
Q Consensus 7 ~~C--PLC~Eel--D~tD~~F~PC~CGYQIC~fC~~rI~~~a~k~~~~grCPACRr~Yde 62 (810)
..| |-|-.+. |..-....||.|+|.||+-||-.-+. ..|.||+|+.+|..
T Consensus 125 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------~~~~~~~~~~~~~~ 178 (1135)
T PLN02248 125 SSCAMPGCDGKVMRDERGEDLLPCECGFKICRDCYIDAVK------SGGICPGCKEPYKV 178 (1135)
T ss_pred CcccccCcccccccccccccCCcccccchhHHhHhhhhhh------cCCCCCCCcccccc
Confidence 455 4565554 22335679999999999999987652 38999999999944
No 123
>PHA02926 zinc finger-like protein; Provisional
Probab=94.97 E-value=0.026 Score=59.49 Aligned_cols=57 Identities=23% Similarity=0.526 Sum_probs=39.6
Q ss_pred cCCCCCCcccCCC----cCCCCc-cccCCCchhhhhhHhHhHhhhhhccccCCCCCCCCCCc
Q 003574 5 GEKTCPLCAEEMD----LTDQQL-KPCKCGYEICVWCWHHIMDMAEKEETEGRCPACRSPYD 61 (810)
Q Consensus 5 ~d~~CPLC~EelD----~tD~~F-~PC~CGYQIC~fC~~rI~~~a~k~~~~grCPACRr~Yd 61 (810)
.|.+|++|+|.+- ..|+.| ..=+|++-.|+-|...-++..........||-||..+.
T Consensus 169 kE~eCgICmE~I~eK~~~~eRrFGIL~~CnHsFCl~CIr~Wr~~r~~~~~~rsCPiCR~~f~ 230 (242)
T PHA02926 169 KEKECGICYEVVYSKRLENDRYFGLLDSCNHIFCITCINIWHRTRRETGASDNCPICRTRFR 230 (242)
T ss_pred CCCCCccCccccccccccccccccccCCCCchHHHHHHHHHHHhccccCcCCcCCCCcceee
Confidence 3689999999862 456666 34479999999998877642111122456999999764
No 124
>smart00184 RING Ring finger. E3 ubiquitin-protein ligase activity is intrinsic to the RING domain of c-Cbl and is likely to be a general function of this domain; Various RING fingers exhibit binding activity towards E2 ubiquitin-conjugating enzymes (Ubc' s)
Probab=94.88 E-value=0.031 Score=39.90 Aligned_cols=39 Identities=31% Similarity=0.872 Sum_probs=29.6
Q ss_pred CCCcccCCCcCCCCccccCCCchhhhhhHhHhHhhhhhccccCCCCCC
Q 003574 9 CPLCAEEMDLTDQQLKPCKCGYEICVWCWHHIMDMAEKEETEGRCPAC 56 (810)
Q Consensus 9 CPLC~EelD~tD~~F~PC~CGYQIC~fC~~rI~~~a~k~~~~grCPAC 56 (810)
|++|.+.. .....-+||+.+|..|+..+.+ .....||.|
T Consensus 1 C~iC~~~~----~~~~~~~C~H~~c~~C~~~~~~-----~~~~~CP~C 39 (39)
T smart00184 1 CPICLEEL----KDPVVLPCGHTFCRSCIRKWLK-----SGNNTCPIC 39 (39)
T ss_pred CCcCccCC----CCcEEecCCChHHHHHHHHHHH-----hCcCCCCCC
Confidence 89998883 3344446999999999998864 356789987
No 125
>KOG1365 consensus RNA-binding protein Fusilli, contains RRM domain [RNA processing and modification; General function prediction only]
Probab=94.87 E-value=0.027 Score=63.00 Aligned_cols=75 Identities=21% Similarity=0.441 Sum_probs=61.7
Q ss_pred cCeEEEeCCCCCCChhHHHHHHHhhccCcceeE---EEEeecCCCcccccCCCceEEEEEeCCHHHHHHHHHHhCCCccC
Q 003574 104 RNLVYIVGLPLNLGDEDLLQRREYFGQYGKVLK---VSMSRTAAGVIQQFPNNTCSVYITYSKEEEAVRCIQSVHGFVLE 180 (810)
Q Consensus 104 kNLVYV~GLP~~iaEEDLLr~~EyFGQYGkI~K---IvInrdk~g~~~q~~~~~gsAYVTFs~~EDA~rAI~aLDG~~LD 180 (810)
|+.|-..|||+..+.|||| +|||-|-.-++ |.|..+..| +++|-|||.|.+.|+|..|.+..+.....
T Consensus 280 kdcvRLRGLPy~AtvEdIL---~FlgdFa~~i~f~gVHmv~N~qG------rPSGeAFIqm~nae~a~aaaqk~hk~~mk 350 (508)
T KOG1365|consen 280 KDCVRLRGLPYEATVEDIL---DFLGDFATDIRFQGVHMVLNGQG------RPSGEAFIQMRNAERARAAAQKCHKKLMK 350 (508)
T ss_pred CCeeEecCCChhhhHHHHH---HHHHHHhhhcccceeEEEEcCCC------CcChhhhhhhhhhHHHHHHHHHHHHhhcc
Confidence 8899999999999999996 89999986543 556555443 47889999999999999999999888776
Q ss_pred CcEEEEe
Q 003574 181 GKSLKAC 187 (810)
Q Consensus 181 GR~LRAS 187 (810)
+|.|.|-
T Consensus 351 ~RYiEvf 357 (508)
T KOG1365|consen 351 SRYIEVF 357 (508)
T ss_pred cceEEEe
Confidence 7766653
No 126
>TIGR00599 rad18 DNA repair protein rad18. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=94.48 E-value=0.034 Score=62.59 Aligned_cols=52 Identities=23% Similarity=0.673 Sum_probs=40.0
Q ss_pred ccCCCCCCcccCCCcCCCCccccCCCchhhhhhHhHhHhhhhhccccCCCCCCCCCCccccc
Q 003574 4 EGEKTCPLCAEEMDLTDQQLKPCKCGYEICVWCWHHIMDMAEKEETEGRCPACRSPYDKEKI 65 (810)
Q Consensus 4 d~d~~CPLC~EelD~tD~~F~PC~CGYQIC~fC~~rI~~~a~k~~~~grCPACRr~Yde~~i 65 (810)
+++..||+|.+.|. +-.. =+||+.+|.-|...... ..+.||.||.++....+
T Consensus 24 e~~l~C~IC~d~~~--~Pvi--tpCgH~FCs~CI~~~l~------~~~~CP~Cr~~~~~~~L 75 (397)
T TIGR00599 24 DTSLRCHICKDFFD--VPVL--TSCSHTFCSLCIRRCLS------NQPKCPLCRAEDQESKL 75 (397)
T ss_pred ccccCCCcCchhhh--CccC--CCCCCchhHHHHHHHHh------CCCCCCCCCCccccccC
Confidence 45579999999884 3322 37999999999998763 24689999999876544
No 127
>KOG2416 consensus Acinus (induces apoptotic chromatin condensation) [Chromatin structure and dynamics]
Probab=94.40 E-value=0.027 Score=65.65 Aligned_cols=74 Identities=26% Similarity=0.319 Sum_probs=58.6
Q ss_pred cCeEEEeCCCCCCChhHHHHHHHhhccCcce-eEEEEeecCCCcccccCCCceEEEEEeCCHHHHHHHHHHhCCCcc---
Q 003574 104 RNLVYIVGLPLNLGDEDLLQRREYFGQYGKV-LKVSMSRTAAGVIQQFPNNTCSVYITYSKEEEAVRCIQSVHGFVL--- 179 (810)
Q Consensus 104 kNLVYV~GLP~~iaEEDLLr~~EyFGQYGkI-~KIvInrdk~g~~~q~~~~~gsAYVTFs~~EDA~rAI~aLDG~~L--- 179 (810)
.|.|||.||-.-++...| ++++|+-|.+ ....|-+-+ + -+||+|.+.++|..-+.+|||...
T Consensus 444 SnvlhI~nLvRPFTlgQL---kelL~rtgg~Vee~WmDkIK----------S-hCyV~yss~eEA~atr~AlhnV~WP~s 509 (718)
T KOG2416|consen 444 SNVLHIDNLVRPFTLGQL---KELLGRTGGNVEEFWMDKIK----------S-HCYVSYSSVEEAAATREALHNVQWPPS 509 (718)
T ss_pred cceEeeecccccchHHHH---HHHHhhccCchHHHHHHHhh----------c-ceeEecccHHHHHHHHHHHhccccCCC
Confidence 589999999999999888 8999976655 444332211 1 259999999999999999999864
Q ss_pred CCcEEEEeecCC
Q 003574 180 EGKSLKACFGTT 191 (810)
Q Consensus 180 DGR~LRASfGTT 191 (810)
+++.|-|.|++.
T Consensus 510 NPK~L~adf~~~ 521 (718)
T KOG2416|consen 510 NPKHLIADFVRA 521 (718)
T ss_pred CCceeEeeecch
Confidence 678899988765
No 128
>PLN02195 cellulose synthase A
Probab=94.35 E-value=0.029 Score=68.68 Aligned_cols=57 Identities=30% Similarity=0.797 Sum_probs=46.6
Q ss_pred CCcccCCCCCCcccCCCcCC--CCccccC-CCchhhhhhHhHhHhhhhhccccCCCCCCCCCCcc
Q 003574 1 MSDEGEKTCPLCAEEMDLTD--QQLKPCK-CGYEICVWCWHHIMDMAEKEETEGRCPACRSPYDK 62 (810)
Q Consensus 1 msDd~d~~CPLC~EelD~tD--~~F~PC~-CGYQIC~fC~~rI~~~a~k~~~~grCPACRr~Yde 62 (810)
|-+.....|.+|-++++++. ..|.-|. |||.+|+-||..=+ .+.+-.||.|...|.+
T Consensus 1 ~~~~~~~~c~~cgd~~~~~~~g~~fvaC~eC~~pvCrpCyeyer-----~eg~q~CpqCkt~Yk~ 60 (977)
T PLN02195 1 MMESGAPICATCGEEVGVDSNGEAFVACHECSYPLCKACLEYEI-----KEGRKVCLRCGGPYDA 60 (977)
T ss_pred CCcCCCccceecccccCcCCCCCeEEEeccCCCccccchhhhhh-----hcCCccCCccCCcccc
Confidence 44555679999999887665 5689998 99999999997654 4578889999999983
No 129
>PF14569 zf-UDP: Zinc-binding RING-finger; PDB: 1WEO_A.
Probab=94.11 E-value=0.045 Score=49.43 Aligned_cols=53 Identities=23% Similarity=0.820 Sum_probs=24.9
Q ss_pred cCCCCCCcccCCCc--CCCCccccC-CCchhhhhhHhHhHhhhhhccccCCCCCCCCCCcc
Q 003574 5 GEKTCPLCAEEMDL--TDQQLKPCK-CGYEICVWCWHHIMDMAEKEETEGRCPACRSPYDK 62 (810)
Q Consensus 5 ~d~~CPLC~EelD~--tD~~F~PC~-CGYQIC~fC~~rI~~~a~k~~~~grCPACRr~Yde 62 (810)
....|.+|-+.+-+ +-..|..|- |+|-||+-||..=+. +.+-.||.|+.+|..
T Consensus 8 ~~qiCqiCGD~VGl~~~Ge~FVAC~eC~fPvCr~CyEYErk-----eg~q~CpqCkt~ykr 63 (80)
T PF14569_consen 8 NGQICQICGDDVGLTENGEVFVACHECAFPVCRPCYEYERK-----EGNQVCPQCKTRYKR 63 (80)
T ss_dssp SS-B-SSS--B--B-SSSSB--S-SSS-----HHHHHHHHH-----TS-SB-TTT--B---
T ss_pred CCcccccccCccccCCCCCEEEEEcccCCccchhHHHHHhh-----cCcccccccCCCccc
Confidence 45689999998744 456799998 999999999997653 367789999999974
No 130
>PF00097 zf-C3HC4: Zinc finger, C3HC4 type (RING finger); InterPro: IPR018957 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule. Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. The C3HC4 type zinc-finger (RING finger) is a cysteine-rich domain of 40 to 60 residues that coordinates two zinc ions, and has the consensus sequence: C-X2-C-X(9-39)-C-X(1-3)-H-X(2-3)-C-X2-C-X(4-48)-C-X2-C where X is any amino acid []. Many proteins containing a RING finger play a key role in the ubiquitination pathway []. More information about these proteins can be found at Protein of the Month: Zinc Fingers [].; PDB: 1CHC_A 2ECW_A 2Y43_B 1V87_A 2DJB_A 2H0D_B 3RPG_C 3KNV_A 2CKL_B 1JM7_A ....
Probab=94.04 E-value=0.027 Score=42.96 Aligned_cols=41 Identities=27% Similarity=0.726 Sum_probs=32.6
Q ss_pred CCCcccCCCcCCCCccccCCCchhhhhhHhHhHhhhhhccccCCCCCC
Q 003574 9 CPLCAEEMDLTDQQLKPCKCGYEICVWCWHHIMDMAEKEETEGRCPAC 56 (810)
Q Consensus 9 CPLC~EelD~tD~~F~PC~CGYQIC~fC~~rI~~~a~k~~~~grCPAC 56 (810)
||+|.+.+.... .-=+||+.+|..|+.++++. .....||.|
T Consensus 1 C~iC~~~~~~~~---~~~~C~H~fC~~C~~~~~~~----~~~~~CP~C 41 (41)
T PF00097_consen 1 CPICLEPFEDPV---ILLPCGHSFCRDCLRKWLEN----SGSVKCPLC 41 (41)
T ss_dssp ETTTSSBCSSEE---EETTTSEEEEHHHHHHHHHH----TSSSBTTTT
T ss_pred CCcCCccccCCC---EEecCCCcchHHHHHHHHHh----cCCccCCcC
Confidence 899999986333 56678999999999999752 456779987
No 131
>KOG4211 consensus Splicing factor hnRNP-F and related RNA-binding proteins [RNA processing and modification]
Probab=93.93 E-value=0.13 Score=59.17 Aligned_cols=73 Identities=19% Similarity=0.367 Sum_probs=56.8
Q ss_pred CeEEEeCCCCCCChhHHHHHHHhhccCcceeE-EEEeecCCCcccccCCCceEEEEEeCCHHHHHHHHHHhCCCccCCcE
Q 003574 105 NLVYIVGLPLNLGDEDLLQRREYFGQYGKVLK-VSMSRTAAGVIQQFPNNTCSVYITYSKEEEAVRCIQSVHGFVLEGKS 183 (810)
Q Consensus 105 NLVYV~GLP~~iaEEDLLr~~EyFGQYGkI~K-IvInrdk~g~~~q~~~~~gsAYVTFs~~EDA~rAI~aLDG~~LDGR~ 183 (810)
-.|=..|||+..+++|| .|||.--=.+.+ |.+..+..+ .+++-|||.|+.+|.|++|++. |...|.-|.
T Consensus 104 ~vVRLRGLPfscte~dI---~~FFaGL~Iv~~gi~l~~d~rg------R~tGEAfVqF~sqe~ae~Al~r-hre~iGhRY 173 (510)
T KOG4211|consen 104 GVVRLRGLPFSCTEEDI---VEFFAGLEIVPDGILLPMDQRG------RPTGEAFVQFESQESAEIALGR-HRENIGHRY 173 (510)
T ss_pred ceEEecCCCccCcHHHH---HHHhcCCcccccceeeeccCCC------CcccceEEEecCHHHHHHHHHH-HHHhhccce
Confidence 45788999999999999 899998754444 444544433 3688999999999999999885 556777787
Q ss_pred EEEe
Q 003574 184 LKAC 187 (810)
Q Consensus 184 LRAS 187 (810)
|.|-
T Consensus 174 IEvF 177 (510)
T KOG4211|consen 174 IEVF 177 (510)
T ss_pred EEee
Confidence 7764
No 132
>KOG4206 consensus Spliceosomal protein snRNP-U1A/U2B [RNA processing and modification]
Probab=93.86 E-value=0.16 Score=53.45 Aligned_cols=76 Identities=14% Similarity=0.385 Sum_probs=64.8
Q ss_pred ccccCeEEEeCCCCCCChhHHHHHHHhhccCcceeEEEEeecCCCcccccCCCceEEEEEeCCHHHHHHHHHHhCCCccC
Q 003574 101 VIQRNLVYIVGLPLNLGDEDLLQRREYFGQYGKVLKVSMSRTAAGVIQQFPNNTCSVYITYSKEEEAVRCIQSVHGFVLE 180 (810)
Q Consensus 101 VIQkNLVYV~GLP~~iaEEDLLr~~EyFGQYGkI~KIvInrdk~g~~~q~~~~~gsAYVTFs~~EDA~rAI~aLDG~~LD 180 (810)
--+.+.+|+.+||.....|.+ ..+|-||.--.+|++...+ ++.|||.|.+...|..|.+++.|+.+-
T Consensus 143 ~ppn~ilf~~niP~es~~e~l---~~lf~qf~g~keir~i~~~----------~~iAfve~~~d~~a~~a~~~lq~~~it 209 (221)
T KOG4206|consen 143 APPNNILFLTNIPSESESEML---SDLFEQFPGFKEIRLIPPR----------SGIAFVEFLSDRQASAAQQALQGFKIT 209 (221)
T ss_pred CCCceEEEEecCCcchhHHHH---HHHHhhCcccceeEeccCC----------CceeEEecchhhhhHHHhhhhccceec
Confidence 345678999999999877666 7999999999999987532 457999999999999999999999875
Q ss_pred -CcEEEEeec
Q 003574 181 -GKSLKACFG 189 (810)
Q Consensus 181 -GR~LRASfG 189 (810)
...+++.|+
T Consensus 210 ~~~~m~i~~a 219 (221)
T KOG4206|consen 210 KKNTMQITFA 219 (221)
T ss_pred cCceEEeccc
Confidence 888888876
No 133
>KOG1457 consensus RNA binding protein (contains RRM repeats) [General function prediction only]
Probab=93.68 E-value=0.059 Score=57.07 Aligned_cols=64 Identities=14% Similarity=0.326 Sum_probs=51.5
Q ss_pred cCeEEEeCCCCCCChhHHHHHHHhhccCcceeEEEEeecCCCcccccCCCceEEEEEeCCHHHHHHHHHHhCCCcc
Q 003574 104 RNLVYIVGLPLNLGDEDLLQRREYFGQYGKVLKVSMSRTAAGVIQQFPNNTCSVYITYSKEEEAVRCIQSVHGFVL 179 (810)
Q Consensus 104 kNLVYV~GLP~~iaEEDLLr~~EyFGQYGkI~KIvInrdk~g~~~q~~~~~gsAYVTFs~~EDA~rAI~aLDG~~L 179 (810)
-.++||.||.++++|++| +.+|..|--...++|-. +. ....|||.|++.|.|..|+..|.|..|
T Consensus 210 cstlfianl~~~~~ed~l---~~~~~~~~gf~~l~~~~-~~--------g~~vaf~~~~~~~~at~am~~lqg~~~ 273 (284)
T KOG1457|consen 210 CSTLFIANLGPNCTEDEL---KQLLSRYPGFHILKIRA-RG--------GMPVAFADFEEIEQATDAMNHLQGNLL 273 (284)
T ss_pred hhhHhhhccCCCCCHHHH---HHHHHhCCCceEEEEec-CC--------CcceEeecHHHHHHHHHHHHHhhccee
Confidence 357899999999999888 89999997655554422 21 245799999999999999999999876
No 134
>PF08952 DUF1866: Domain of unknown function (DUF1866) ; InterPro: IPR015047 This domain, found in synaptojanin, has no known function. ; PDB: 1UFW_A 2DNR_A.
Probab=93.59 E-value=0.17 Score=50.43 Aligned_cols=54 Identities=24% Similarity=0.509 Sum_probs=41.5
Q ss_pred HHhhccCcceeEEEEeecCCCcccccCCCceEEEEEeCCHHHHHHHHHHhCCCccCCcEEEEeecCCC
Q 003574 125 REYFGQYGKVLKVSMSRTAAGVIQQFPNNTCSVYITYSKEEEAVRCIQSVHGFVLEGKSLKACFGTTK 192 (810)
Q Consensus 125 ~EyFGQYGkI~KIvInrdk~g~~~q~~~~~gsAYVTFs~~EDA~rAI~aLDG~~LDGR~LRASfGTTK 192 (810)
-+.|.+||.+.=|++.. ..-+|||.+-+.|.+|+. +||.++.|+.|++..-|+-
T Consensus 54 l~~~~~~GevvLvRfv~-------------~~mwVTF~dg~sALaals-~dg~~v~g~~l~i~LKtpd 107 (146)
T PF08952_consen 54 LQKFAQYGEVVLVRFVG-------------DTMWVTFRDGQSALAALS-LDGIQVNGRTLKIRLKTPD 107 (146)
T ss_dssp HHHHHCCS-ECEEEEET-------------TCEEEEESSCHHHHHHHH-GCCSEETTEEEEEEE----
T ss_pred HHHHHhCCceEEEEEeC-------------CeEEEEECccHHHHHHHc-cCCcEECCEEEEEEeCCcc
Confidence 47899999877666542 136999999999999966 8999999999999986653
No 135
>KOG0129 consensus Predicted RNA-binding protein (RRM superfamily) [Translation, ribosomal structure and biogenesis]
Probab=93.19 E-value=0.26 Score=57.05 Aligned_cols=79 Identities=20% Similarity=0.339 Sum_probs=50.0
Q ss_pred CeEEEeCCCCCCChhHHHHHHHhhccCcceeEEEEeecCCCcccccCCCce---EEEEEeCCHHHHHHHHHHhCCCccCC
Q 003574 105 NLVYIVGLPLNLGDEDLLQRREYFGQYGKVLKVSMSRTAAGVIQQFPNNTC---SVYITYSKEEEAVRCIQSVHGFVLEG 181 (810)
Q Consensus 105 NLVYV~GLP~~iaEEDLLr~~EyFGQYGkI~KIvInrdk~g~~~q~~~~~g---sAYVTFs~~EDA~rAI~aLDG~~LDG 181 (810)
+.|||+|||+.++|++| ...|++||.+. |.=...... ....+ +.| ++|+.|+++.....-|.+..- .-++
T Consensus 260 ~KVFvGGlp~dise~~i---~~~F~~FGs~~-VdWP~k~~~-~~~~p-pkGs~~YvflvFe~E~sV~~Ll~aC~~-~~~~ 332 (520)
T KOG0129|consen 260 RKVFVGGLPWDITEAQI---NASFGQFGSVK-VDWPGKANS-RGRAP-PKGSYGYVFLVFEDERSVQSLLSACSE-GEGN 332 (520)
T ss_pred cceeecCCCccccHHHH---HhhcccccceE-eecCCCccc-cccCC-CCCcccEEEEEecchHHHHHHHHHHhh-cccc
Confidence 46999999999999888 89999999875 222211111 11122 344 899999998877665555443 1222
Q ss_pred cEEEEeecC
Q 003574 182 KSLKACFGT 190 (810)
Q Consensus 182 R~LRASfGT 190 (810)
-.++|+--|
T Consensus 333 ~yf~vss~~ 341 (520)
T KOG0129|consen 333 YYFKVSSPT 341 (520)
T ss_pred eEEEEecCc
Confidence 345555433
No 136
>KOG1456 consensus Heterogeneous nuclear ribonucleoprotein L (contains RRM repeats) [RNA processing and modification]
Probab=92.75 E-value=0.91 Score=51.30 Aligned_cols=73 Identities=19% Similarity=0.287 Sum_probs=59.4
Q ss_pred EeCCCCCCChhHHHHHHHhhccCcceeEEEEeecCCCcccccCCCceEEEEEeCCHHHHHHHHHHhCCCcc-CC-cEEEE
Q 003574 109 IVGLPLNLGDEDLLQRREYFGQYGKVLKVSMSRTAAGVIQQFPNNTCSVYITYSKEEEAVRCIQSVHGFVL-EG-KSLKA 186 (810)
Q Consensus 109 V~GLP~~iaEEDLLr~~EyFGQYGkI~KIvInrdk~g~~~q~~~~~gsAYVTFs~~EDA~rAI~aLDG~~L-DG-R~LRA 186 (810)
|.|--+.|+- |+| +.+--.-|+|.+|+|.+.. +..|-|.|+..+.|.+|-.+|||.-| -| .+||+
T Consensus 127 IlNp~YpItv-DVl--y~Icnp~GkVlRIvIfkkn----------gVQAmVEFdsv~~AqrAk~alNGADIYsGCCTLKI 193 (494)
T KOG1456|consen 127 ILNPQYPITV-DVL--YTICNPQGKVLRIVIFKKN----------GVQAMVEFDSVEVAQRAKAALNGADIYSGCCTLKI 193 (494)
T ss_pred eecCccccch-hhh--hhhcCCCCceEEEEEEecc----------ceeeEEeechhHHHHHHHhhcccccccccceeEEE
Confidence 4454556766 665 8999999999999999752 45799999999999999999999965 45 58999
Q ss_pred eecCCCCc
Q 003574 187 CFGTTKYC 194 (810)
Q Consensus 187 SfGTTKYC 194 (810)
.||....-
T Consensus 194 eyAkP~rl 201 (494)
T KOG1456|consen 194 EYAKPTRL 201 (494)
T ss_pred EecCccee
Confidence 99987543
No 137
>KOG0112 consensus Large RNA-binding protein (RRM superfamily) [General function prediction only]
Probab=92.75 E-value=0.12 Score=62.76 Aligned_cols=78 Identities=17% Similarity=0.233 Sum_probs=65.2
Q ss_pred cccccCeEEEeCCCCCCChhHHHHHHHhhccCcceeEEEEeecCCCcccccCCCceEEEEEeCCHHHHHHHHHHhCCCcc
Q 003574 100 RVIQRNLVYIVGLPLNLGDEDLLQRREYFGQYGKVLKVSMSRTAAGVIQQFPNNTCSVYITYSKEEEAVRCIQSVHGFVL 179 (810)
Q Consensus 100 RVIQkNLVYV~GLP~~iaEEDLLr~~EyFGQYGkI~KIvInrdk~g~~~q~~~~~gsAYVTFs~~EDA~rAI~aLDG~~L 179 (810)
.+.--..++|+||.+......| ...|+.||.|..|.+-+. --+|||.|+...-|..|...|-|+.|
T Consensus 451 kst~ttr~~sgglg~w~p~~~l---~r~fd~fGpir~Idy~hg-----------q~yayi~yes~~~aq~a~~~~rgap~ 516 (975)
T KOG0112|consen 451 KSTPTTRLQSGGLGPWSPVSRL---NREFDRFGPIRIIDYRHG-----------QPYAYIQYESPPAAQAATHDMRGAPL 516 (975)
T ss_pred ccccceeeccCCCCCCChHHHH---HHHhhccCcceeeecccC-----------CcceeeecccCccchhhHHHHhcCcC
Confidence 4555567999999999877666 689999999999877431 23689999999999999999999999
Q ss_pred CC--cEEEEeecCC
Q 003574 180 EG--KSLKACFGTT 191 (810)
Q Consensus 180 DG--R~LRASfGTT 191 (810)
+| +.|+|.|+-+
T Consensus 517 G~P~~r~rvdla~~ 530 (975)
T KOG0112|consen 517 GGPPRRLRVDLASP 530 (975)
T ss_pred CCCCcccccccccC
Confidence 87 7799999765
No 138
>KOG4285 consensus Mitotic phosphoprotein [Cell cycle control, cell division, chromosome partitioning]
Probab=92.71 E-value=0.19 Score=55.16 Aligned_cols=65 Identities=23% Similarity=0.393 Sum_probs=51.5
Q ss_pred CeEEEeCCCCCCChhHHHHHHHhhccCcceeEEEEeecCCCcccccCCCceEEEEEeCCHHHHHHHHHHhCCCccCCcEE
Q 003574 105 NLVYIVGLPLNLGDEDLLQRREYFGQYGKVLKVSMSRTAAGVIQQFPNNTCSVYITYSKEEEAVRCIQSVHGFVLEGKSL 184 (810)
Q Consensus 105 NLVYV~GLP~~iaEEDLLr~~EyFGQYGkI~KIvInrdk~g~~~q~~~~~gsAYVTFs~~EDA~rAI~aLDG~~LDGR~L 184 (810)
.-|-|-|.|+.-+. =|| ..|.+||.|+|.+... .+-..||.|...-+|.+||. -||.+|+|-++
T Consensus 198 ~WVTVfGFppg~~s-~vL---~~F~~cG~Vvkhv~~~-----------ngNwMhirYssr~~A~KALs-kng~ii~g~vm 261 (350)
T KOG4285|consen 198 TWVTVFGFPPGQVS-IVL---NLFSRCGEVVKHVTPS-----------NGNWMHIRYSSRTHAQKALS-KNGTIIDGDVM 261 (350)
T ss_pred ceEEEeccCccchh-HHH---HHHHhhCeeeeeecCC-----------CCceEEEEecchhHHHHhhh-hcCeeeccceE
Confidence 34778888887554 343 6899999999998862 23468999999999999987 49999999875
Q ss_pred E
Q 003574 185 K 185 (810)
Q Consensus 185 R 185 (810)
-
T Consensus 262 i 262 (350)
T KOG4285|consen 262 I 262 (350)
T ss_pred E
Confidence 4
No 139
>PF15227 zf-C3HC4_4: zinc finger of C3HC4-type, RING; PDB: 2EGP_A 2ECV_A 2ECJ_A 2YSL_A 2YSJ_A.
Probab=92.70 E-value=0.053 Score=42.92 Aligned_cols=42 Identities=24% Similarity=0.717 Sum_probs=27.3
Q ss_pred CCCcccCCCcCCCCccccCCCchhhhhhHhHhHhhhhhccccCCCCCC
Q 003574 9 CPLCAEEMDLTDQQLKPCKCGYEICVWCWHHIMDMAEKEETEGRCPAC 56 (810)
Q Consensus 9 CPLC~EelD~tD~~F~PC~CGYQIC~fC~~rI~~~a~k~~~~grCPAC 56 (810)
||+|.+-|. .=..-+||+..|+.|..++.+.. ......||-|
T Consensus 1 CpiC~~~~~----~Pv~l~CGH~FC~~Cl~~~~~~~--~~~~~~CP~C 42 (42)
T PF15227_consen 1 CPICLDLFK----DPVSLPCGHSFCRSCLERLWKEP--SGSGFSCPEC 42 (42)
T ss_dssp ETTTTSB-S----SEEE-SSSSEEEHHHHHHHHCCS--SSST---SSS
T ss_pred CCccchhhC----CccccCCcCHHHHHHHHHHHHcc--CCcCCCCcCC
Confidence 899999984 33446789999999999997521 2222689987
No 140
>KOG0129 consensus Predicted RNA-binding protein (RRM superfamily) [Translation, ribosomal structure and biogenesis]
Probab=92.40 E-value=0.24 Score=57.23 Aligned_cols=69 Identities=22% Similarity=0.329 Sum_probs=58.3
Q ss_pred ccccccccCeEEEeCCCCCCChhHHHHHHHhhc-cCcceeEEEEeecCCCcccccCCCceEEEEEeCCHHHHHHHHHH
Q 003574 97 SSVRVIQRNLVYIVGLPLNLGDEDLLQRREYFG-QYGKVLKVSMSRTAAGVIQQFPNNTCSVYITYSKEEEAVRCIQS 173 (810)
Q Consensus 97 anvRVIQkNLVYV~GLP~~iaEEDLLr~~EyFG-QYGkI~KIvInrdk~g~~~q~~~~~gsAYVTFs~~EDA~rAI~a 173 (810)
.++.+--+.+|||||||.-++-+|| -.+|. -||.|.-+-|-.|...+ -|.|.+=|||.+...=.+||.+
T Consensus 363 ~sq~lDprrTVFVGgvprpl~A~eL---A~imd~lyGgV~yaGIDtD~k~K-----YPkGaGRVtFsnqqsYi~AIsa 432 (520)
T KOG0129|consen 363 HNQPIDPRRTVFVGGLPRPLTAEEL---AMIMEDLFGGVLYVGIDTDPKLK-----YPKGAGRVTFSNQQAYIKAISA 432 (520)
T ss_pred cCcccCccceEEecCCCCcchHHHH---HHHHHHhcCceEEEEeccCcccC-----CCCCcceeeecccHHHHHHHhh
Confidence 4455667889999999999999999 78888 69999999998875543 4677889999999999999986
No 141
>KOG3002 consensus Zn finger protein [General function prediction only]
Probab=91.90 E-value=0.11 Score=56.65 Aligned_cols=46 Identities=26% Similarity=0.730 Sum_probs=40.6
Q ss_pred ccCCCCCCcccCCCcCCCCccccCCCchhhhhhHhHhHhhhhhccccCCCCCCCCCCc
Q 003574 4 EGEKTCPLCAEEMDLTDQQLKPCKCGYEICVWCWHHIMDMAEKEETEGRCPACRSPYD 61 (810)
Q Consensus 4 d~d~~CPLC~EelD~tD~~F~PC~CGYQIC~fC~~rI~~~a~k~~~~grCPACRr~Yd 61 (810)
.+-.+||.|.+.|. ...+-|.=|+-+|-.|--+. ..+||.||.++.
T Consensus 46 ~~lleCPvC~~~l~---~Pi~QC~nGHlaCssC~~~~---------~~~CP~Cr~~~g 91 (299)
T KOG3002|consen 46 LDLLDCPVCFNPLS---PPIFQCDNGHLACSSCRTKV---------SNKCPTCRLPIG 91 (299)
T ss_pred hhhccCchhhccCc---ccceecCCCcEehhhhhhhh---------cccCCccccccc
Confidence 44569999999998 78899999999999998765 469999999998
No 142
>PF13445 zf-RING_UBOX: RING-type zinc-finger; PDB: 2CT2_A.
Probab=91.80 E-value=0.092 Score=42.22 Aligned_cols=43 Identities=23% Similarity=0.677 Sum_probs=21.8
Q ss_pred CCCcccCCCcCCCCccccCCCchhhhhhHhHhHhhhhhccccCCCC
Q 003574 9 CPLCAEEMDLTDQQLKPCKCGYEICVWCWHHIMDMAEKEETEGRCP 54 (810)
Q Consensus 9 CPLC~EelD~tD~~F~PC~CGYQIC~fC~~rI~~~a~k~~~~grCP 54 (810)
||+|.| |+-++..=+--+||+-||+-|..+|.... ....-+||
T Consensus 1 CpIc~e-~~~~~n~P~~L~CGH~~c~~cl~~l~~~~--~~~~~kCP 43 (43)
T PF13445_consen 1 CPICKE-FSTEENPPMVLPCGHVFCKDCLQKLSKKS--DRNRFKCP 43 (43)
T ss_dssp -TTT-----TTSS-EEE-SSS-EEEHHHHHHHHHH---S-S-B--T
T ss_pred CCcccc-ccCCCCCCEEEeCccHHHHHHHHHHHhcC--CCCeeeCc
Confidence 999999 85444444556699999999999997421 12345676
No 143
>PLN02638 cellulose synthase A (UDP-forming), catalytic subunit
Probab=91.67 E-value=0.095 Score=64.98 Aligned_cols=50 Identities=22% Similarity=0.814 Sum_probs=42.4
Q ss_pred CCCCCcccCCCcCCC--CccccC-CCchhhhhhHhHhHhhhhhccccCCCCCCCCCCc
Q 003574 7 KTCPLCAEEMDLTDQ--QLKPCK-CGYEICVWCWHHIMDMAEKEETEGRCPACRSPYD 61 (810)
Q Consensus 7 ~~CPLC~EelD~tD~--~F~PC~-CGYQIC~fC~~rI~~~a~k~~~~grCPACRr~Yd 61 (810)
.+|.+|-+++.+|.. .|.-|- |||-+|+-||..=+ .+.+-.||.|+..|.
T Consensus 18 qiCqICGD~vg~~~~Ge~FVAC~eC~FPVCrpCYEYEr-----~eG~q~CPqCktrYk 70 (1079)
T PLN02638 18 QVCQICGDNVGKTVDGEPFVACDVCAFPVCRPCYEYER-----KDGNQSCPQCKTKYK 70 (1079)
T ss_pred ceeeecccccCcCCCCCEEEEeccCCCccccchhhhhh-----hcCCccCCccCCchh
Confidence 489999999876654 689998 99999999997644 467888999999996
No 144
>PF05290 Baculo_IE-1: Baculovirus immediate-early protein (IE-0); InterPro: IPR007954 This entry contains the Baculovirus immediate-early protein IE-0.
Probab=91.64 E-value=0.19 Score=49.60 Aligned_cols=57 Identities=26% Similarity=0.785 Sum_probs=44.1
Q ss_pred cccCCCCCCcccCCCcCCCCc-cccC-CCchhhhhhHhHhHhhhhhccccCCCCCCCCCCcccc
Q 003574 3 DEGEKTCPLCAEEMDLTDQQL-KPCK-CGYEICVWCWHHIMDMAEKEETEGRCPACRSPYDKEK 64 (810)
Q Consensus 3 Dd~d~~CPLC~EelD~tD~~F-~PC~-CGYQIC~fC~~rI~~~a~k~~~~grCPACRr~Yde~~ 64 (810)
|.---+|.||-|-- +|.+| +|=. |||.||--||-.+-..+ +....||+|+.-|-.+.
T Consensus 77 d~~lYeCnIC~etS--~ee~FLKPneCCgY~iCn~Cya~LWK~~---~~ypvCPvCkTSFKss~ 135 (140)
T PF05290_consen 77 DPKLYECNICKETS--AEERFLKPNECCGYSICNACYANLWKFC---NLYPVCPVCKTSFKSSS 135 (140)
T ss_pred CCCceeccCccccc--chhhcCCcccccchHHHHHHHHHHHHHc---ccCCCCCcccccccccc
Confidence 33345899999875 46666 7877 59999999999998654 47899999999775443
No 145
>PLN02915 cellulose synthase A [UDP-forming], catalytic subunit
Probab=91.63 E-value=0.11 Score=64.24 Aligned_cols=50 Identities=32% Similarity=0.919 Sum_probs=42.0
Q ss_pred CCCCCcccCCCcCC--CCccccC-CCchhhhhhHhHhHhhhhhccccCCCCCCCCCCc
Q 003574 7 KTCPLCAEEMDLTD--QQLKPCK-CGYEICVWCWHHIMDMAEKEETEGRCPACRSPYD 61 (810)
Q Consensus 7 ~~CPLC~EelD~tD--~~F~PC~-CGYQIC~fC~~rI~~~a~k~~~~grCPACRr~Yd 61 (810)
..|.+|-+++.++. ..|.-|- |+|.+|+-||..=+ .+.+-.||.|+.+|.
T Consensus 16 ~~c~iCGd~vg~~~~Ge~FVAC~eC~fpvCr~cyeye~-----~~g~~~cp~c~t~y~ 68 (1044)
T PLN02915 16 KTCRVCGDEVGVKEDGQPFVACHVCGFPVCKPCYEYER-----SEGNQCCPQCNTRYK 68 (1044)
T ss_pred chhhccccccCcCCCCCEEEEeccCCCccccchhhhhh-----hcCCccCCccCCchh
Confidence 68999999986654 4689998 99999999997543 457788999999997
No 146
>PF04641 Rtf2: Rtf2 RING-finger
Probab=91.47 E-value=0.2 Score=53.00 Aligned_cols=64 Identities=23% Similarity=0.568 Sum_probs=43.7
Q ss_pred ccCCCCCCcccCCCcCCCCccccCCCchhhhhhHhHhHhhhhhccccCCCCCCCCCCccccccccccChhH
Q 003574 4 EGEKTCPLCAEEMDLTDQQLKPCKCGYEICVWCWHHIMDMAEKEETEGRCPACRSPYDKEKIVGMAAKCES 74 (810)
Q Consensus 4 d~d~~CPLC~EelD~tD~~F~PC~CGYQIC~fC~~rI~~~a~k~~~~grCPACRr~Yde~~i~~~~~~~e~ 74 (810)
+..-.||++..+|.-.-.-.+.-+||.. ||+.-|.++ + .+..||.|-.+|.++.|+.+.+..++
T Consensus 111 ~~~~~CPvt~~~~~~~~~fv~l~~cG~V---~s~~alke~--k--~~~~Cp~c~~~f~~~DiI~Lnp~~ee 174 (260)
T PF04641_consen 111 EGRFICPVTGKEFNGKHKFVYLRPCGCV---FSEKALKEL--K--KSKKCPVCGKPFTEEDIIPLNPPEEE 174 (260)
T ss_pred CceeECCCCCcccCCceeEEEEcCCCCE---eeHHHHHhh--c--ccccccccCCccccCCEEEecCCccH
Confidence 3445899999999544344455577744 555555443 1 35679999999999998877665544
No 147
>COG5236 Uncharacterized conserved protein, contains RING Zn-finger [General function prediction only]
Probab=91.43 E-value=0.12 Score=57.37 Aligned_cols=55 Identities=25% Similarity=0.584 Sum_probs=43.1
Q ss_pred cccCCCCCCcccCCCcCCCCccccCCCchhhhhhHhHhHhhhhhccccCCCCCCCCCCccccc
Q 003574 3 DEGEKTCPLCAEEMDLTDQQLKPCKCGYEICVWCWHHIMDMAEKEETEGRCPACRSPYDKEKI 65 (810)
Q Consensus 3 Dd~d~~CPLC~EelD~tD~~F~PC~CGYQIC~fC~~rI~~~a~k~~~~grCPACRr~Yde~~i 65 (810)
||+++.|-||.+.+.- ...+ ||+.|||.-|--|++.+ .+..-||-||.+.++-.|
T Consensus 58 DEen~~C~ICA~~~TY--s~~~--PC~H~~CH~Ca~RlRAL----Y~~K~C~~CrTE~e~V~f 112 (493)
T COG5236 58 DEENMNCQICAGSTTY--SARY--PCGHQICHACAVRLRAL----YMQKGCPLCRTETEAVVF 112 (493)
T ss_pred ccccceeEEecCCceE--EEec--cCCchHHHHHHHHHHHH----HhccCCCccccccceEEE
Confidence 6777899999999852 2223 57999999999999875 467789999998875433
No 148
>KOG2164 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=91.33 E-value=0.13 Score=59.33 Aligned_cols=49 Identities=29% Similarity=0.691 Sum_probs=37.1
Q ss_pred CCCCCCcccCCCcCCCCccccC--CCchhhhhhHhHhHhhhhhccccCCCCCCCCCCc
Q 003574 6 EKTCPLCAEEMDLTDQQLKPCK--CGYEICVWCWHHIMDMAEKEETEGRCPACRSPYD 61 (810)
Q Consensus 6 d~~CPLC~EelD~tD~~F~PC~--CGYQIC~fC~~rI~~~a~k~~~~grCPACRr~Yd 61 (810)
+..||||.|+-- .||- ||+-.|.-|.=+..... +-..-+.||=||.-..
T Consensus 186 ~~~CPICL~~~~------~p~~t~CGHiFC~~CiLqy~~~s-~~~~~~~CPiC~s~I~ 236 (513)
T KOG2164|consen 186 DMQCPICLEPPS------VPVRTNCGHIFCGPCILQYWNYS-AIKGPCSCPICRSTIT 236 (513)
T ss_pred CCcCCcccCCCC------cccccccCceeeHHHHHHHHhhh-cccCCccCCchhhhcc
Confidence 679999999875 2222 99999999988777644 3456788999998544
No 149
>KOG0317 consensus Predicted E3 ubiquitin ligase, integral peroxisomal membrane protein [Posttranslational modification, protein turnover, chaperones]
Probab=91.04 E-value=0.19 Score=54.62 Aligned_cols=55 Identities=25% Similarity=0.665 Sum_probs=36.3
Q ss_pred cccCCCCCCcccCCCcCCCCccccCCCchhhhhhHhHhHhhhhhccccCCCCCCCCCCccccccc
Q 003574 3 DEGEKTCPLCAEEMDLTDQQLKPCKCGYEICVWCWHHIMDMAEKEETEGRCPACRSPYDKEKIVG 67 (810)
Q Consensus 3 Dd~d~~CPLC~EelD~tD~~F~PC~CGYQIC~fC~~rI~~~a~k~~~~grCPACRr~Yde~~i~~ 67 (810)
++....|-||+|.+. |..- =+||+-.|++|..-=. . +..-||-||.......+..
T Consensus 236 ~~a~~kC~LCLe~~~--~pSa--TpCGHiFCWsCI~~w~---~---ek~eCPlCR~~~~pskvi~ 290 (293)
T KOG0317|consen 236 PEATRKCSLCLENRS--NPSA--TPCGHIFCWSCILEWC---S---EKAECPLCREKFQPSKVIC 290 (293)
T ss_pred CCCCCceEEEecCCC--CCCc--CcCcchHHHHHHHHHH---c---cccCCCcccccCCCcceee
Confidence 355679999999982 2222 2489986666654332 2 2233999999988777654
No 150
>KOG4307 consensus RNA binding protein RBM12/SWAN [General function prediction only]
Probab=91.02 E-value=0.51 Score=56.46 Aligned_cols=74 Identities=20% Similarity=0.395 Sum_probs=62.1
Q ss_pred eEEEeCCCCCCChhHHHHHHHhhccCcceeE-EEEeecCCCcccccCCCceEEEEEeCCHHHHHHHHHHhCCCccCCcEE
Q 003574 106 LVYIVGLPLNLGDEDLLQRREYFGQYGKVLK-VSMSRTAAGVIQQFPNNTCSVYITYSKEEEAVRCIQSVHGFVLEGKSL 184 (810)
Q Consensus 106 LVYV~GLP~~iaEEDLLr~~EyFGQYGkI~K-IvInrdk~g~~~q~~~~~gsAYVTFs~~EDA~rAI~aLDG~~LDGR~L 184 (810)
.|-+.|+|++++-||| -|||.-|-.+-. |.+-++..+. ++|-+-|-|+..++|.+|...||+..|..|+|
T Consensus 869 V~~~~n~Pf~v~l~dI---~~FF~dY~~~p~sI~~r~nd~G~------pTGe~mvAfes~~eAr~A~~dl~~~~i~nr~V 939 (944)
T KOG4307|consen 869 VLSCNNFPFDVTLEDI---VEFFNDYEPDPNSIRIRRNDDGV------PTGECMVAFESQEEARRASMDLDGQKIRNRVV 939 (944)
T ss_pred EEEecCCCccccHHHH---HHHhcccccCCCceeEeecCCCC------cccceeEeecCHHHHHhhhhccccCcccceeE
Confidence 5678899999999999 599999987754 4444444443 67889999999999999999999999999999
Q ss_pred EEee
Q 003574 185 KACF 188 (810)
Q Consensus 185 RASf 188 (810)
++..
T Consensus 940 ~l~i 943 (944)
T KOG4307|consen 940 SLRI 943 (944)
T ss_pred EEEe
Confidence 8764
No 151
>PF10309 DUF2414: Protein of unknown function (DUF2414); InterPro: IPR019416 This entry contains proteins that have no known function.
Probab=90.86 E-value=0.74 Score=40.02 Aligned_cols=57 Identities=25% Similarity=0.518 Sum_probs=43.6
Q ss_pred cccCeEEEeCCCCCCChhHHHHHHHhhccC---cceeEEEEeecCCCcccccCCCceEEEEEeCCHHHHHHHHHHh
Q 003574 102 IQRNLVYIVGLPLNLGDEDLLQRREYFGQY---GKVLKVSMSRTAAGVIQQFPNNTCSVYITYSKEEEAVRCIQSV 174 (810)
Q Consensus 102 IQkNLVYV~GLP~~iaEEDLLr~~EyFGQY---GkI~KIvInrdk~g~~~q~~~~~gsAYVTFs~~EDA~rAI~aL 174 (810)
++.+.|+|.|+. ++..+|+ ..||..| ....+|.-.-+. ++=|.|.+.+.|.+|+.+|
T Consensus 3 ~rpeavhirGvd-~lsT~dI---~~y~~~y~~~~~~~~IEWIdDt------------ScNvvf~d~~~A~~AL~~L 62 (62)
T PF10309_consen 3 IRPEAVHIRGVD-ELSTDDI---KAYFSEYFDEEGPFRIEWIDDT------------SCNVVFKDEETAARALVAL 62 (62)
T ss_pred ceeceEEEEcCC-CCCHHHH---HHHHHHhcccCCCceEEEecCC------------cEEEEECCHHHHHHHHHcC
Confidence 567899999995 5778899 7899999 124466544331 4679999999999999875
No 152
>KOG4676 consensus Splicing factor, arginine/serine-rich [RNA processing and modification]
Probab=89.94 E-value=0.29 Score=55.29 Aligned_cols=76 Identities=12% Similarity=0.318 Sum_probs=57.3
Q ss_pred eEEEeCCCCCCChhHHHHHHHhhccCcceeEEEEeecCCCcccccCCCceEEEEEeCCHHHHHHHHHHhCCCccCCcEEE
Q 003574 106 LVYIVGLPLNLGDEDLLQRREYFGQYGKVLKVSMSRTAAGVIQQFPNNTCSVYITYSKEEEAVRCIQSVHGFVLEGKSLK 185 (810)
Q Consensus 106 LVYV~GLP~~iaEEDLLr~~EyFGQYGkI~KIvInrdk~g~~~q~~~~~gsAYVTFs~~EDA~rAI~aLDG~~LDGR~LR 185 (810)
.|.|.||.+.++.+++ +-+||-.|+|..+.|.-+-... ..+-..-.+||-|.+...+.-| |.|-++.+=|+.|-
T Consensus 9 vIqvanispsat~dqm---~tlFg~lGkI~elrlyp~~~d~--~~pv~sRtcyVkf~d~~sv~va-QhLtntvfvdrali 82 (479)
T KOG4676|consen 9 VIQVANISPSATKDQM---QTLFGNLGKIPELRLYPNVDDS--KIPVISRTCYVKFLDSQSVTVA-QHLTNTVFVDRALI 82 (479)
T ss_pred eeeecccCchhhHHHH---HHHHhhccccccccccCCCCCc--cCcceeeeEEEeccCCcceeHH-hhhccceeeeeeEE
Confidence 4679999999999999 8999999999999887532211 1222334689999998877766 77888887777665
Q ss_pred Ee
Q 003574 186 AC 187 (810)
Q Consensus 186 AS 187 (810)
|-
T Consensus 83 v~ 84 (479)
T KOG4676|consen 83 VR 84 (479)
T ss_pred EE
Confidence 43
No 153
>PLN02400 cellulose synthase
Probab=89.86 E-value=0.15 Score=63.44 Aligned_cols=49 Identities=22% Similarity=0.852 Sum_probs=41.7
Q ss_pred CCCCcccCCCcCCC--CccccC-CCchhhhhhHhHhHhhhhhccccCCCCCCCCCCc
Q 003574 8 TCPLCAEEMDLTDQ--QLKPCK-CGYEICVWCWHHIMDMAEKEETEGRCPACRSPYD 61 (810)
Q Consensus 8 ~CPLC~EelD~tD~--~F~PC~-CGYQIC~fC~~rI~~~a~k~~~~grCPACRr~Yd 61 (810)
.|.+|-+++.+|.. .|.-|- |+|-+|+-||..=+ .+.+-.||.|+..|.
T Consensus 38 iCqICGD~VG~t~dGe~FVAC~eCaFPVCRpCYEYER-----keGnq~CPQCkTrYk 89 (1085)
T PLN02400 38 ICQICGDDVGVTETGDVFVACNECAFPVCRPCYEYER-----KDGTQCCPQCKTRYR 89 (1085)
T ss_pred eeeecccccCcCCCCCEEEEEccCCCccccchhheec-----ccCCccCcccCCccc
Confidence 89999999866543 689998 99999999997643 457888999999997
No 154
>KOG0115 consensus RNA-binding protein p54nrb (RRM superfamily) [RNA processing and modification]
Probab=89.42 E-value=0.51 Score=50.88 Aligned_cols=68 Identities=18% Similarity=0.302 Sum_probs=55.3
Q ss_pred ccccccCeEEEeCCCCCCChhHHHHHHHhhccCcceeEEEEeecCCCcccccCCCceEEEEEeCCHHHHHHHHHHhC
Q 003574 99 VRVIQRNLVYIVGLPLNLGDEDLLQRREYFGQYGKVLKVSMSRTAAGVIQQFPNNTCSVYITYSKEEEAVRCIQSVH 175 (810)
Q Consensus 99 vRVIQkNLVYV~GLP~~iaEEDLLr~~EyFGQYGkI~KIvInrdk~g~~~q~~~~~gsAYVTFs~~EDA~rAI~aLD 175 (810)
||.--+..|||++|...+..|.+ .+-|.+||.|..-|+..+..+. +++-..|.|..+-.|.+|...+.
T Consensus 26 ~rfa~~a~l~V~nl~~~~sndll---~~~f~~fg~~e~av~~vD~r~k------~t~eg~v~~~~k~~a~~a~rr~~ 93 (275)
T KOG0115|consen 26 VRFAMHAELYVVNLMQGASNDLL---EQAFRRFGPIERAVAKVDDRGK------PTREGIVEFAKKPNARKAARRCR 93 (275)
T ss_pred EEeeccceEEEEecchhhhhHHH---HHhhhhcCccchheeeeccccc------ccccchhhhhcchhHHHHHHHhc
Confidence 45455588999999999988766 7899999999998887765542 34567899999999999998873
No 155
>KOG1855 consensus Predicted RNA-binding protein [General function prediction only]
Probab=88.84 E-value=0.37 Score=54.92 Aligned_cols=82 Identities=20% Similarity=0.297 Sum_probs=60.9
Q ss_pred cccCeEEEeCCCCCCChhHHHHHHHhhccCcceeEEEEeec---CCCcccccCC------CceEEEEEeCCHHHHHHHHH
Q 003574 102 IQRNLVYIVGLPLNLGDEDLLQRREYFGQYGKVLKVSMSRT---AAGVIQQFPN------NTCSVYITYSKEEEAVRCIQ 172 (810)
Q Consensus 102 IQkNLVYV~GLP~~iaEEDLLr~~EyFGQYGkI~KIvInrd---k~g~~~q~~~------~~gsAYVTFs~~EDA~rAI~ 172 (810)
+|-.+|.|-+||..-..|.| .++||.+|.|+.|+|-+. ..... +++. ..-+|+|.|...+.|.+|.+
T Consensus 229 l~srtivaenLP~Dh~~enl---~kiFg~~G~IksIRIckPgaip~d~r-~~~~~~~~~~tk~~AlvEye~~~~A~KA~e 304 (484)
T KOG1855|consen 229 LPSRTIVAENLPLDHSYENL---SKIFGTVGSIKSIRICKPGAIPEDVR-GFPKKYFELQTKECALVEYEEVEAARKARE 304 (484)
T ss_pred cccceEEEecCCcchHHHHH---HHHhhcccceeeeeecCCCCCCcccc-cCCccchhhhhhhhhhhhhhhhHHHHHHHH
Confidence 47788999999999888899 799999999999999765 11111 1221 24578999999999999998
Q ss_pred HhCCCccCCcEEEEe
Q 003574 173 SVHGFVLEGKSLKAC 187 (810)
Q Consensus 173 aLDG~~LDGR~LRAS 187 (810)
.++....--.-|||-
T Consensus 305 ~~~~e~~wr~glkvk 319 (484)
T KOG1855|consen 305 LLNPEQNWRMGLKVK 319 (484)
T ss_pred hhchhhhhhhcchhh
Confidence 886655433335544
No 156
>PF04847 Calcipressin: Calcipressin; InterPro: IPR006931 Calcipressin 1 negatively regulates calcineurin (IPR015757 from INTERPRO) by direct binding and is essential for the survival of T helper type 1 cells. Calcipressin 1 is a phosphoprotein that increases its capacity to inhibit calcineurin when phosphorylated at the FLISPP motif, and this phosphorylation also controls the half-life of calcipressin 1 by accelerating its degradation []. Calcineurin is a calcium-responsive enzyme that dephosphorylates the nuclear factor of activated T cells (NFAT). In so doing it promotes its nuclear translocation and uniquely links calcium signalling to transcriptional regulation []. Calcipressins are a family of proteins derived from three genes. Calcipressin 1 is also known as modulatory calcineurin-interacting protein 1 (MCIP1), Adapt78 and Down syndrome critical region 1 (DSCR1). Calcipressin 2 is variously known as MCIP2, ZAKI-4 and DSCR1-like 1. Calcipressin 3 is also called MCIP3 and DSCR1-like 2 []. DSCR1 (Adapt78) is associated with successful adaptation to oxidative stress and calcium stress as well as with diseases like Alzheimer's and Down syndrome. The DSCR1 (Adapt78) isoform 1 protein, calcipressin 1, inhibits calcineurin and protects against acute calcium-mediated stress damage, including transient oxidative stress []. Calcipressin 1 is encoded by DSCR1, a gene on human chromosome 21. Calcipressin 1 isoform 1 has an N-terminal coding region, which generates a new polypeptide of 252 amino acids. Endogenous calcipressin 1 exists as a complex together with the calcineurin A and B heterodimer []. ; GO: 0019722 calcium-mediated signaling; PDB: 1WEY_A.
Probab=88.35 E-value=0.82 Score=46.86 Aligned_cols=57 Identities=26% Similarity=0.461 Sum_probs=43.2
Q ss_pred HHhhccCcceeEEEEeecCCCcccccCCCceEEEEEeCCHHHHHHHHHHhC--CCccCCcEEEEeecCCC
Q 003574 125 REYFGQYGKVLKVSMSRTAAGVIQQFPNNTCSVYITYSKEEEAVRCIQSVH--GFVLEGKSLKACFGTTK 192 (810)
Q Consensus 125 ~EyFGQYGkI~KIvInrdk~g~~~q~~~~~gsAYVTFs~~EDA~rAI~aLD--G~~LDGR~LRASfGTTK 192 (810)
+++|.+|+.+..+...+.- ..+-|.|.+.++|.+|.+.|+ |..+.|..||+.||..-
T Consensus 13 ~~l~~~~~~~~~~~~L~sF-----------rRi~v~f~~~~~A~~~r~~l~~~~~~~~g~~l~~yf~~~~ 71 (184)
T PF04847_consen 13 EELFSTYDPPVQFSPLKSF-----------RRIRVVFESPESAQRARQLLHWDGTSFNGKRLRVYFGQPT 71 (184)
T ss_dssp HHHHHTT-SS-EEEEETTT-----------TEEEEE-SSTTHHHHHHHTST--TSEETTEE-EEE----S
T ss_pred HHHHHhcCCceEEEEcCCC-----------CEEEEEeCCHHHHHHHHHHhcccccccCCCceEEEEcccc
Confidence 7899999999999887642 146899999999999999999 99999999999999443
No 157
>KOG2193 consensus IGF-II mRNA-binding protein IMP, contains RRM and KH domains [RNA processing and modification; General function prediction only]
Probab=87.37 E-value=0.65 Score=53.08 Aligned_cols=76 Identities=25% Similarity=0.337 Sum_probs=60.7
Q ss_pred CeEEEeCCCCCCChhHHHHHHHhhccCcceeEEEEeecCCCcccccCCCceEEEEEeCCHHHHHHHHHHhCCC-ccCCcE
Q 003574 105 NLVYIVGLPLNLGDEDLLQRREYFGQYGKVLKVSMSRTAAGVIQQFPNNTCSVYITYSKEEEAVRCIQSVHGF-VLEGKS 183 (810)
Q Consensus 105 NLVYV~GLP~~iaEEDLLr~~EyFGQYGkI~KIvInrdk~g~~~q~~~~~gsAYVTFs~~EDA~rAI~aLDG~-~LDGR~ 183 (810)
|.+|+++|.+..+..+| ...||-- ++-.+ .++--+.+++||.+.+..-|.+||+.++|. ++.|+.
T Consensus 2 nklyignL~p~~~psdl---~svfg~a----k~~~~-------g~fl~k~gyafvd~pdq~wa~kaie~~sgk~elqGkr 67 (584)
T KOG2193|consen 2 NKLYIGNLSPQVTPSDL---ESVFGDA----KIPGS-------GQFLVKSGYAFVDCPDQQWANKAIETLSGKVELQGKR 67 (584)
T ss_pred CcccccccCCCCChHHH---HHHhccc----cCCCC-------cceeeecceeeccCCchhhhhhhHHhhchhhhhcCce
Confidence 67899999999999999 8899876 21111 112234678999999999999999999998 589999
Q ss_pred EEEeecCCCCc
Q 003574 184 LKACFGTTKYC 194 (810)
Q Consensus 184 LRASfGTTKYC 194 (810)
+.+.+...|.-
T Consensus 68 ~e~~~sv~kkq 78 (584)
T KOG2193|consen 68 QEVEHSVPKKQ 78 (584)
T ss_pred eeccchhhHHH
Confidence 99998777643
No 158
>KOG1365 consensus RNA-binding protein Fusilli, contains RRM domain [RNA processing and modification; General function prediction only]
Probab=87.13 E-value=1.5 Score=49.75 Aligned_cols=58 Identities=24% Similarity=0.386 Sum_probs=45.2
Q ss_pred EEEeCCCCCCChhHHHHHHHhhccCc----ceeEEEEeecCCCcccccCCCceEEEEEeCCHHHHHHHHHH
Q 003574 107 VYIVGLPLNLGDEDLLQRREYFGQYG----KVLKVSMSRTAAGVIQQFPNNTCSVYITYSKEEEAVRCIQS 173 (810)
Q Consensus 107 VYV~GLP~~iaEEDLLr~~EyFGQYG----kI~KIvInrdk~g~~~q~~~~~gsAYVTFs~~EDA~rAI~a 173 (810)
|-..|||++.++.|+ .+|||+-- -..+|...+...+ +++|-|||.|..+|+|..|+..
T Consensus 164 vRmRGLPfdat~~dV---v~FF~~~cpv~~g~egvLFV~rpdg------rpTGdAFvlfa~ee~aq~aL~k 225 (508)
T KOG1365|consen 164 VRMRGLPFDATALDV---VEFFGPPCPVTGGTEGVLFVTRPDG------RPTGDAFVLFACEEDAQFALRK 225 (508)
T ss_pred EEecCCCCCcchHHH---HHhcCCCCcccCCccceEEEECCCC------CcccceEEEecCHHHHHHHHHH
Confidence 456799999999999 69998543 3345666655444 3688999999999999999875
No 159
>KOG4172 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=87.11 E-value=0.2 Score=43.03 Aligned_cols=47 Identities=30% Similarity=0.725 Sum_probs=34.2
Q ss_pred CCCCCCcccCCCcCCCCccccCCCch-hhhhhHhHhHhhhhhccccCCCCCCCCCCc
Q 003574 6 EKTCPLCAEEMDLTDQQLKPCKCGYE-ICVWCWHHIMDMAEKEETEGRCPACRSPYD 61 (810)
Q Consensus 6 d~~CPLC~EelD~tD~~F~PC~CGYQ-IC~fC~~rI~~~a~k~~~~grCPACRr~Yd 61 (810)
+.+|-||+|. +.|..++.|. +- +|--|--+++ ....|.||-||+|..
T Consensus 7 ~dECTICye~--pvdsVlYtCG--HMCmCy~Cg~rl~-----~~~~g~CPiCRapi~ 54 (62)
T KOG4172|consen 7 SDECTICYEH--PVDSVLYTCG--HMCMCYACGLRLK-----KALHGCCPICRAPIK 54 (62)
T ss_pred ccceeeeccC--cchHHHHHcc--hHHhHHHHHHHHH-----HccCCcCcchhhHHH
Confidence 4689999996 4578888764 32 5666666664 347899999999753
No 160
>KOG2135 consensus Proteins containing the RNA recognition motif [General function prediction only]
Probab=86.86 E-value=0.31 Score=56.06 Aligned_cols=76 Identities=20% Similarity=0.352 Sum_probs=55.5
Q ss_pred ccccCeEEEeCCCCCCChhHHHHHHHhhccCcceeEEEEeecCCCcccccCCCceEEEEEeCCHHHHHHHHHHhCCCccC
Q 003574 101 VIQRNLVYIVGLPLNLGDEDLLQRREYFGQYGKVLKVSMSRTAAGVIQQFPNNTCSVYITYSKEEEAVRCIQSVHGFVLE 180 (810)
Q Consensus 101 VIQkNLVYV~GLP~~iaEEDLLr~~EyFGQYGkI~KIvInrdk~g~~~q~~~~~gsAYVTFs~~EDA~rAI~aLDG~~LD 180 (810)
+++-.++-+--.|+.+..-..| ...|.+||+|..|.|-.. .-.|-|||.+..+|-+| .+..|..|+
T Consensus 369 ~~dhs~l~lek~~~glnt~a~l--n~hfA~fG~i~n~qv~~~-----------~~~a~vTF~t~aeag~a-~~s~~avln 434 (526)
T KOG2135|consen 369 VVDHSPLALEKSPFGLNTIADL--NPHFAQFGEIENIQVDYS-----------SLHAVVTFKTRAEAGEA-YASHGAVLN 434 (526)
T ss_pred hcccchhhhhccCCCCchHhhh--hhhhhhcCccccccccCc-----------hhhheeeeeccccccch-hccccceec
Confidence 3344444555555555544433 799999999999988643 12468999999999877 457999999
Q ss_pred CcEEEEeecC
Q 003574 181 GKSLKACFGT 190 (810)
Q Consensus 181 GR~LRASfGT 190 (810)
||.||+-|-.
T Consensus 435 nr~iKl~whn 444 (526)
T KOG2135|consen 435 NRFIKLFWHN 444 (526)
T ss_pred CceeEEEEec
Confidence 9999998843
No 161
>KOG0128 consensus RNA-binding protein SART3 (RRM superfamily) [RNA processing and modification]
Probab=86.78 E-value=0.27 Score=59.60 Aligned_cols=77 Identities=21% Similarity=0.233 Sum_probs=66.8
Q ss_pred cCeEEEeCCCCCCChhHHHHHHHhhccCcceeEEEEeecCCCcccccCCCceEEEEEeCCHHHHHHHHHHhCCCccCCcE
Q 003574 104 RNLVYIVGLPLNLGDEDLLQRREYFGQYGKVLKVSMSRTAAGVIQQFPNNTCSVYITYSKEEEAVRCIQSVHGFVLEGKS 183 (810)
Q Consensus 104 kNLVYV~GLP~~iaEEDLLr~~EyFGQYGkI~KIvInrdk~g~~~q~~~~~gsAYVTFs~~EDA~rAI~aLDG~~LDGR~ 183 (810)
|-.|+|.|.|+.-++|++ +.+|..+|.++++.+...+.+. +.|-|||-|.++.+|.+|...+++..+.-+.
T Consensus 736 K~~v~i~g~pf~gt~e~~---k~l~~~~gn~~~~~~vt~r~gk------pkg~a~v~y~~ea~~s~~~~s~d~~~~rE~~ 806 (881)
T KOG0128|consen 736 KISVAISGPPFQGTKEEL---KSLASKTGNVTSLRLVTVRAGK------PKGKARVDYNTEADASRKVASVDVAGKRENN 806 (881)
T ss_pred hhhhheeCCCCCCchHHH---HhhccccCCccccchhhhhccc------cccceeccCCCcchhhhhcccchhhhhhhcC
Confidence 778999999999999998 8999999999999877666553 5778999999999999999999998887777
Q ss_pred EEEeec
Q 003574 184 LKACFG 189 (810)
Q Consensus 184 LRASfG 189 (810)
+.+..+
T Consensus 807 ~~v~vs 812 (881)
T KOG0128|consen 807 GEVQVS 812 (881)
T ss_pred cccccc
Confidence 766654
No 162
>PF08675 RNA_bind: RNA binding domain; InterPro: IPR014789 This domain corresponds to the RNA binding domain of Poly(A)-specific ribonuclease (PARN). ; GO: 0003723 RNA binding, 0004535 poly(A)-specific ribonuclease activity, 0046872 metal ion binding, 0006402 mRNA catabolic process, 0005634 nucleus, 0005737 cytoplasm; PDB: 3CTR_A 2ROK_A 3D45_B 1WHV_A.
Probab=86.71 E-value=1.9 Score=39.87 Aligned_cols=56 Identities=14% Similarity=0.409 Sum_probs=43.2
Q ss_pred cCeEEEeCCCCCCChhHHHHHHHhhccCcceeEEEEeecCCCcccccCCCceEEEEEeCCHHHHHHHHHHhC
Q 003574 104 RNLVYIVGLPLNLGDEDLLQRREYFGQYGKVLKVSMSRTAAGVIQQFPNNTCSVYITYSKEEEAVRCIQSVH 175 (810)
Q Consensus 104 kNLVYV~GLP~~iaEEDLLr~~EyFGQYGkI~KIvInrdk~g~~~q~~~~~gsAYVTFs~~EDA~rAI~aLD 175 (810)
|.-||-...|..+...|| .++|..||.|.=--|+. .+|||...+.+.|..++..++
T Consensus 8 RdHVFhltFPkeWK~~DI---~qlFspfG~I~VsWi~d-------------TSAfV~l~~r~~~~~v~~~~~ 63 (87)
T PF08675_consen 8 RDHVFHLTFPKEWKTSDI---YQLFSPFGQIYVSWIND-------------TSAFVALHNRDQAKVVMNTLK 63 (87)
T ss_dssp GCCEEEEE--TT--HHHH---HHHCCCCCCEEEEEECT-------------TEEEEEECCCHHHHHHHHHHT
T ss_pred cceEEEEeCchHhhhhhH---HHHhccCCcEEEEEEcC-------------CcEEEEeecHHHHHHHHHHhc
Confidence 556788889999999999 79999999986555542 279999999999999998876
No 163
>PF12861 zf-Apc11: Anaphase-promoting complex subunit 11 RING-H2 finger
Probab=85.79 E-value=0.95 Score=41.65 Aligned_cols=54 Identities=26% Similarity=0.664 Sum_probs=35.7
Q ss_pred cCCCCCCcccCCCcC---------CCCccccCCCchhhhhhHhHhHhhhhhccccCCCCCCCCCCc
Q 003574 5 GEKTCPLCAEEMDLT---------DQQLKPCKCGYEICVWCWHHIMDMAEKEETEGRCPACRSPYD 61 (810)
Q Consensus 5 ~d~~CPLC~EelD~t---------D~~F~PC~CGYQIC~fC~~rI~~~a~k~~~~grCPACRr~Yd 61 (810)
+|+.|+||..+||.+ |-.+.-+.|+..+-.-|..+=++ ....+++||-||+++.
T Consensus 20 ~dd~CgICr~~fdg~Cp~Ck~Pgd~Cplv~g~C~H~FH~hCI~kWl~---~~~~~~~CPmCR~~w~ 82 (85)
T PF12861_consen 20 NDDVCGICRMPFDGCCPDCKFPGDDCPLVWGKCSHNFHMHCILKWLS---TQSSKGQCPMCRQPWK 82 (85)
T ss_pred CCCceeeEecccccCCCCccCCCCCCceeeccCccHHHHHHHHHHHc---cccCCCCCCCcCCeee
Confidence 467888888888732 23334456777766666665553 2345789999999874
No 164
>KOG4265 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=85.76 E-value=0.4 Score=53.44 Aligned_cols=49 Identities=33% Similarity=0.862 Sum_probs=40.4
Q ss_pred ccCCCCCCcccCCCcCCCCccccC--CCchhhhhhHhHhHhhhhhccccCCCCCCCCCCccc
Q 003574 4 EGEKTCPLCAEEMDLTDQQLKPCK--CGYEICVWCWHHIMDMAEKEETEGRCPACRSPYDKE 63 (810)
Q Consensus 4 d~d~~CPLC~EelD~tD~~F~PC~--CGYQIC~fC~~rI~~~a~k~~~~grCPACRr~Yde~ 63 (810)
|.-++|=+|+.+- .|....||. | +|.-|-.-++ -...+||=||++..+-
T Consensus 288 ~~gkeCVIClse~--rdt~vLPCRHLC---LCs~Ca~~Lr------~q~n~CPICRqpi~~l 338 (349)
T KOG4265|consen 288 ESGKECVICLSES--RDTVVLPCRHLC---LCSGCAKSLR------YQTNNCPICRQPIEEL 338 (349)
T ss_pred cCCCeeEEEecCC--cceEEecchhhe---hhHhHHHHHH------HhhcCCCccccchHhh
Confidence 4457999999986 699999998 7 8999999886 2578999999987653
No 165
>COG5432 RAD18 RING-finger-containing E3 ubiquitin ligase [Signal transduction mechanisms]
Probab=85.01 E-value=0.42 Score=52.39 Aligned_cols=46 Identities=28% Similarity=0.791 Sum_probs=35.6
Q ss_pred CCCCCcccCCCcCCCCcccc--CCCchhhhhhHhHhHhhhhhccccCCCCCCCCCCcccc
Q 003574 7 KTCPLCAEEMDLTDQQLKPC--KCGYEICVWCWHHIMDMAEKEETEGRCPACRSPYDKEK 64 (810)
Q Consensus 7 ~~CPLC~EelD~tD~~F~PC--~CGYQIC~fC~~rI~~~a~k~~~~grCPACRr~Yde~~ 64 (810)
.-|-||-+-|. .|| +||+-+|-||..+-+ ..+..||+||.+.-+.-
T Consensus 26 lrC~IC~~~i~------ip~~TtCgHtFCslCIR~hL------~~qp~CP~Cr~~~~esr 73 (391)
T COG5432 26 LRCRICDCRIS------IPCETTCGHTFCSLCIRRHL------GTQPFCPVCREDPCESR 73 (391)
T ss_pred HHhhhhhheee------cceecccccchhHHHHHHHh------cCCCCCccccccHHhhh
Confidence 46899988775 466 599999999987654 35789999998765543
No 166
>COG5243 HRD1 HRD ubiquitin ligase complex, ER membrane component [Posttranslational modification, protein turnover, chaperones]
Probab=84.65 E-value=0.66 Score=52.30 Aligned_cols=50 Identities=30% Similarity=0.750 Sum_probs=37.4
Q ss_pred cCCCCCCcccCCCcCC---------CCccccCCCchhhhhhHhHhHhhhhhccccCCCCCCCCCC
Q 003574 5 GEKTCPLCAEEMDLTD---------QQLKPCKCGYEICVWCWHHIMDMAEKEETEGRCPACRSPY 60 (810)
Q Consensus 5 ~d~~CPLC~EelD~tD---------~~F~PC~CGYQIC~fC~~rI~~~a~k~~~~grCPACRr~Y 60 (810)
+|..|-+||+||=-+| +.-|--+||+-.=+-|+..-++ -.--||-||+|.
T Consensus 286 ~D~~C~ICmde~~h~~~~~~~~~~~~~pKrLpCGHilHl~CLknW~E------RqQTCPICr~p~ 344 (491)
T COG5243 286 SDRTCTICMDEMFHPDHEPLPRGLDMTPKRLPCGHILHLHCLKNWLE------RQQTCPICRRPV 344 (491)
T ss_pred CCCeEEEecccccCCCCccCcccccCCcccccccceeeHHHHHHHHH------hccCCCcccCcc
Confidence 5689999999964444 2234568999888888888764 245699999973
No 167
>COG5574 PEX10 RING-finger-containing E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=84.60 E-value=0.68 Score=50.08 Aligned_cols=50 Identities=26% Similarity=0.497 Sum_probs=33.9
Q ss_pred ccCCCCCCcccCCCcCCCCccccCCCchhhhhhHhHhHhhhhhccccCCCCCCCCCCc
Q 003574 4 EGEKTCPLCAEEMDLTDQQLKPCKCGYEICVWCWHHIMDMAEKEETEGRCPACRSPYD 61 (810)
Q Consensus 4 d~d~~CPLC~EelD~tD~~F~PC~CGYQIC~fC~~rI~~~a~k~~~~grCPACRr~Yd 61 (810)
+.|..|+||+|++. .+.==+||+-.|++|.--... ...-..||-||+--.
T Consensus 213 ~~d~kC~lC~e~~~----~ps~t~CgHlFC~~Cl~~~~t----~~k~~~CplCRak~~ 262 (271)
T COG5574 213 LADYKCFLCLEEPE----VPSCTPCGHLFCLSCLLISWT----KKKYEFCPLCRAKVY 262 (271)
T ss_pred ccccceeeeecccC----CcccccccchhhHHHHHHHHH----hhccccCchhhhhcc
Confidence 35678999999985 233335899988888765332 123456999998443
No 168
>KOG0802 consensus E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=84.43 E-value=0.56 Score=54.53 Aligned_cols=55 Identities=22% Similarity=0.554 Sum_probs=39.8
Q ss_pred ccCCCCCCcccCCCcCCCCccc--cCCCchhhhhhHhHhHhhhhhccccCCCCCCCCCCccccc
Q 003574 4 EGEKTCPLCAEEMDLTDQQLKP--CKCGYEICVWCWHHIMDMAEKEETEGRCPACRSPYDKEKI 65 (810)
Q Consensus 4 d~d~~CPLC~EelD~tD~~F~P--C~CGYQIC~fC~~rI~~~a~k~~~~grCPACRr~Yde~~i 65 (810)
..+..|+||.|+|---+. -.| -+||+..|..|+-.-.+ ..--||-||..+....+
T Consensus 289 ~~~~~C~IC~e~l~~~~~-~~~~rL~C~Hifh~~CL~~W~e------r~qtCP~CR~~~~~~~~ 345 (543)
T KOG0802|consen 289 LSDELCIICLEELHSGHN-ITPKRLPCGHIFHDSCLRSWFE------RQQTCPTCRTVLYDYVL 345 (543)
T ss_pred hcCCeeeeechhhccccc-cccceeecccchHHHHHHHHHH------HhCcCCcchhhhhcccc
Confidence 347899999999953322 333 35999999999987764 26679999995544443
No 169
>PF12678 zf-rbx1: RING-H2 zinc finger; InterPro: IPR024766 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule. Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. This domain constitutes a conserved region found in proteins that participate in diverse functions relevant to chromosome metabolism and cell cycle control [].The domain contains 8 cysteine/ histidine residues which are proposed to be the conserved residues involved in zinc binding.; PDB: 4A0C_D 4A0L_I 4A0K_B 2ECL_A 1LDK_C 3RTR_F 3DQV_Y 1U6G_B 1LDJ_B 2HYE_D ....
Probab=84.28 E-value=0.81 Score=40.02 Aligned_cols=47 Identities=21% Similarity=0.622 Sum_probs=31.0
Q ss_pred cCCCCCCcccCCCcC---------CCCccccCCCchhhhhhHhHhHhhhhhccccCCCCCCC
Q 003574 5 GEKTCPLCAEEMDLT---------DQQLKPCKCGYEICVWCWHHIMDMAEKEETEGRCPACR 57 (810)
Q Consensus 5 ~d~~CPLC~EelD~t---------D~~F~PC~CGYQIC~fC~~rI~~~a~k~~~~grCPACR 57 (810)
.++.|+||.++|+.. +..+.-=+||+....-|..+-+. .+..||.||
T Consensus 18 ~~d~C~IC~~~l~~~~~~~~~~~~~~~i~~~~C~H~FH~~Ci~~Wl~------~~~~CP~CR 73 (73)
T PF12678_consen 18 ADDNCAICREPLEDPCPECQAPQDECPIVWGPCGHIFHFHCISQWLK------QNNTCPLCR 73 (73)
T ss_dssp CCSBETTTTSBTTSTTCCHHHCTTTS-EEEETTSEEEEHHHHHHHHT------TSSB-TTSS
T ss_pred cCCcccccChhhhChhhhhcCCccccceEecccCCCEEHHHHHHHHh------cCCcCCCCC
Confidence 455699999999322 12222225899988888887763 344899998
No 170
>KOG3800 consensus Predicted E3 ubiquitin ligase containing RING finger, subunit of transcription/repair factor TFIIH and CDK-activating kinase assembly factor [Posttranslational modification, protein turnover, chaperones]
Probab=83.92 E-value=1.1 Score=49.00 Aligned_cols=54 Identities=26% Similarity=0.584 Sum_probs=40.1
Q ss_pred CCCCcccCC-CcCCCCccccCCCchhhhhhHhHhHhhhhhccccCCCCCCCCCCcccccc
Q 003574 8 TCPLCAEEM-DLTDQQLKPCKCGYEICVWCWHHIMDMAEKEETEGRCPACRSPYDKEKIV 66 (810)
Q Consensus 8 ~CPLC~Eel-D~tD~~F~PC~CGYQIC~fC~~rI~~~a~k~~~~grCPACRr~Yde~~i~ 66 (810)
-||.|.-.- =--|.-++-=+|||.+|--|.++|.. ...+.||.|-++.-...+.
T Consensus 2 ~Cp~CKt~~Y~np~lk~~in~C~H~lCEsCvd~iF~-----~g~~~CpeC~~iLRk~nfr 56 (300)
T KOG3800|consen 2 ACPKCKTDRYLNPDLKLMINECGHRLCESCVDRIFS-----LGPAQCPECMVILRKNNFR 56 (300)
T ss_pred CCcccccceecCccceeeeccccchHHHHHHHHHHh-----cCCCCCCcccchhhhcccc
Confidence 599996543 12234444459999999999999974 5789999999877666654
No 171
>PF10650 zf-C3H1: Putative zinc-finger domain; InterPro: IPR019607 This domain is conserved in fungi and might be a zinc-finger domain as it contains three conserved Cs and an H in the C-x8-C-x5-C-x3-H conformation typical of a zinc-finger.
Probab=82.64 E-value=0.7 Score=33.31 Aligned_cols=20 Identities=35% Similarity=0.795 Sum_probs=18.8
Q ss_pred CcccccCCCCCCCCCCcccc
Q 003574 193 YCHAWLRNVPCTNPDCLYLH 212 (810)
Q Consensus 193 YCs~FLRg~~C~N~dC~YLH 212 (810)
-|.+.|+|..|..++|.|.|
T Consensus 2 lC~yEl~Gg~Cnd~~C~~QH 21 (23)
T PF10650_consen 2 LCPYELTGGVCNDPDCEFQH 21 (23)
T ss_pred CCccccCCCeeCCCCCCccc
Confidence 48899999999999999999
No 172
>KOG0311 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=81.91 E-value=0.24 Score=55.27 Aligned_cols=49 Identities=20% Similarity=0.598 Sum_probs=35.8
Q ss_pred cCCCCCCcccCCCcCCCCccccCCCchhhhhhHhHhHhhhhhccccCCCCCCCCCCc
Q 003574 5 GEKTCPLCAEEMDLTDQQLKPCKCGYEICVWCWHHIMDMAEKEETEGRCPACRSPYD 61 (810)
Q Consensus 5 ~d~~CPLC~EelD~tD~~F~PC~CGYQIC~fC~~rI~~~a~k~~~~grCPACRr~Yd 61 (810)
.+..||+|.+-|. +..-.=.|++++|.-|+-.-+. ..+.-||.||+-..
T Consensus 42 ~~v~c~icl~llk---~tmttkeClhrfc~~ci~~a~r-----~gn~ecptcRk~l~ 90 (381)
T KOG0311|consen 42 IQVICPICLSLLK---KTMTTKECLHRFCFDCIWKALR-----SGNNECPTCRKKLV 90 (381)
T ss_pred hhhccHHHHHHHH---hhcccHHHHHHHHHHHHHHHHH-----hcCCCCchHHhhcc
Confidence 4578999998874 2233336999999999876543 36788999998553
No 173
>KOG2857 consensus Predicted MYND Zn-finger protein/hormone receptor interactor [Transcription]
Probab=81.80 E-value=0.61 Score=46.56 Aligned_cols=27 Identities=41% Similarity=1.093 Sum_probs=23.0
Q ss_pred cCCCchhhhhhHhHhHhhhhhccccCCCCCCCCCCc
Q 003574 26 CKCGYEICVWCWHHIMDMAEKEETEGRCPACRSPYD 61 (810)
Q Consensus 26 C~CGYQIC~fC~~rI~~~a~k~~~~grCPACRr~Yd 61 (810)
|+| -++|.-|...-. ..+||+|+.||=
T Consensus 2 ~kc-t~tC~ic~e~~~--------KYKCpkC~vPYC 28 (157)
T KOG2857|consen 2 CKC-TTTCVICLESEI--------KYKCPKCSVPYC 28 (157)
T ss_pred Ccc-eeeehhhhcchh--------hccCCCCCCccc
Confidence 788 899999988553 689999999994
No 174
>KOG4307 consensus RNA binding protein RBM12/SWAN [General function prediction only]
Probab=81.34 E-value=1 Score=54.06 Aligned_cols=75 Identities=9% Similarity=0.115 Sum_probs=60.4
Q ss_pred cCeEEEeCCCCCCChhHHHHHHHhhccCcceeE-EEEeecCCCcccccCCCceEEEEEeCCHHHHHHHHHHhCCCccCCc
Q 003574 104 RNLVYIVGLPLNLGDEDLLQRREYFGQYGKVLK-VSMSRTAAGVIQQFPNNTCSVYITYSKEEEAVRCIQSVHGFVLEGK 182 (810)
Q Consensus 104 kNLVYV~GLP~~iaEEDLLr~~EyFGQYGkI~K-IvInrdk~g~~~q~~~~~gsAYVTFs~~EDA~rAI~aLDG~~LDGR 182 (810)
.+.|||-+||....+.++ -.+|..--.|.+ |.|.+-... ..+.-|||.|.+++++..|..--.-+.++.|
T Consensus 434 g~~lyv~~lP~~t~~~~~---v~~f~~~~~Ved~I~lt~~P~~------~~~~~afv~F~~~~a~~~a~~~~~k~y~G~r 504 (944)
T KOG4307|consen 434 GGALYVFQLPVMTPIVPP---VNKFMGAAAVEDFIELTRLPTD------LLRPAAFVAFIHPTAPLTASSVKTKFYPGHR 504 (944)
T ss_pred cceEEeccCCccccccch---hhhhhhhhhhhheeEeccCCcc------cccchhhheeccccccchhhhcccccccCce
Confidence 468999999999999898 578888777777 777654332 2355789999999999999887777778889
Q ss_pred EEEEe
Q 003574 183 SLKAC 187 (810)
Q Consensus 183 ~LRAS 187 (810)
.|||.
T Consensus 505 ~irv~ 509 (944)
T KOG4307|consen 505 IIRVD 509 (944)
T ss_pred EEEee
Confidence 99986
No 175
>KOG0128 consensus RNA-binding protein SART3 (RRM superfamily) [RNA processing and modification]
Probab=81.19 E-value=0.2 Score=60.58 Aligned_cols=69 Identities=17% Similarity=0.244 Sum_probs=54.9
Q ss_pred cCeEEEeCCCCCCChhHHHHHHHhhccCcceeEEEEeecCCCcccccCCCceEEEEEeCCHHHHHHHHHHhCCCccC
Q 003574 104 RNLVYIVGLPLNLGDEDLLQRREYFGQYGKVLKVSMSRTAAGVIQQFPNNTCSVYITYSKEEEAVRCIQSVHGFVLE 180 (810)
Q Consensus 104 kNLVYV~GLP~~iaEEDLLr~~EyFGQYGkI~KIvInrdk~g~~~q~~~~~gsAYVTFs~~EDA~rAI~aLDG~~LD 180 (810)
-+.+||.+|++.+.+++| .+.|+.||.|..|.|......+ ..+|.|||.|..+++|.+||...++..++
T Consensus 667 ~~~~fvsnl~~~~~~~dl---~~~~~~~~~~e~vqi~~h~n~~-----~~rG~~Y~~F~~~~~~~aaV~f~d~~~~g 735 (881)
T KOG0128|consen 667 LIKIFVSNLSPKMSEEDL---SERFSPSGTIEVVQIVIHKNEK-----RFRGKAYVEFLKPEHAGAAVAFRDSCFFG 735 (881)
T ss_pred HHHHHHhhcchhhcCchh---hhhcCccchhhhHHHHHHhhcc-----ccccceeeEeecCCchhhhhhhhhhhhhh
Confidence 356899999999999999 8999999998877654211111 34678999999999999999987776554
No 176
>PF03467 Smg4_UPF3: Smg-4/UPF3 family; InterPro: IPR005120 Nonsense-mediated mRNA decay (NMD) is a surveillance mechanism by which eukaryotic cells detect and degrade transcripts containing premature termination codons. Three 'up-frameshift' proteins, UPF1, UPF2 and UPF3, are essential for this process in organisms ranging from yeast, human to plants []. Exon junction complexes (EJCs) are deposited ~24 nucleotides upstream of exon-exon junctions after splicing. Translation causes displacement of the EJCs, however, premature translation termination upstream of one or more EJCs triggers the recruitment of UPF1, UPF2 and UPF3 and activates the NMD pathway [, ]. This family contains UPF3. The crystal structure of the complex between human UPF2 and UPF3b, which are, respectively, a MIF4G (middle portion of eIF4G) domain and an RNP domain (ribonucleoprotein-type RNA-binding domain) has been determined to 1.95A. The protein-protein interface is mediated by highly conserved charged residues in UPF2 and UPF3b and involves the beta-sheet surface of the UPF3b ribonucleoprotein (RNP) domain, which is generally used by these domains to bind nucleic acids. In UPF3b the RNP domain does not bind RNA, whereas the UPF2 construct and the complex do. It is clear that some RNP domains have evolved for specific protein-protein interactions rather than as nucleic acid binding modules [].; PDB: 1UW4_A 2L08_A.
Probab=80.51 E-value=2.2 Score=43.22 Aligned_cols=71 Identities=20% Similarity=0.267 Sum_probs=42.5
Q ss_pred ccCeEEEeCCCCCCChhHHHHHHHhhcc-Ccce---eEEEEeecCCCcccccCCCceEEEEEeCCHHHHHHHHHHhCCCc
Q 003574 103 QRNLVYIVGLPLNLGDEDLLQRREYFGQ-YGKV---LKVSMSRTAAGVIQQFPNNTCSVYITYSKEEEAVRCIQSVHGFV 178 (810)
Q Consensus 103 QkNLVYV~GLP~~iaEEDLLr~~EyFGQ-YGkI---~KIvInrdk~g~~~q~~~~~gsAYVTFs~~EDA~rAI~aLDG~~ 178 (810)
++..|-|..||+.++++++ .+.+.. ||.. .-+.-....... .+..-..|||.|.+.+++..=++.++|..
T Consensus 6 ~~~KvVIR~LPP~LteeeF---~~~i~~~l~~~~~w~y~~g~~~~~~~---~~~~~SRaYi~F~~~~~~~~F~~~~~g~~ 79 (176)
T PF03467_consen 6 EGTKVVIRRLPPNLTEEEF---WEQISPWLPDEWDWYYFQGKYGKKSF---KPPTYSRAYINFKNPEDLLEFRDRFDGHV 79 (176)
T ss_dssp ---EEEEEEE-TTS-HHHH---CCCCSS--SSE---EEEEEEES-SSS---TTS--EEEEEEESSCHHHHHHHHHCTTEE
T ss_pred cCceEEEeCCCCCCCHHHH---HHHhhhhcccccceEEEecCCCCccC---CCCcceEEEEEeCCHHHHHHHHHhcCCcE
Confidence 3457899999999999888 455555 5555 222211111111 01122369999999999999999999977
Q ss_pred c
Q 003574 179 L 179 (810)
Q Consensus 179 L 179 (810)
+
T Consensus 80 F 80 (176)
T PF03467_consen 80 F 80 (176)
T ss_dssp E
T ss_pred E
Confidence 5
No 177
>PHA02825 LAP/PHD finger-like protein; Provisional
Probab=80.13 E-value=1.4 Score=44.77 Aligned_cols=49 Identities=24% Similarity=0.672 Sum_probs=34.5
Q ss_pred ccCCCCCCcccCCCcCCCCccccCC-C-----chhhhhhHhHhHhhhhhccccCCCCCCCCCCcc
Q 003574 4 EGEKTCPLCAEEMDLTDQQLKPCKC-G-----YEICVWCWHHIMDMAEKEETEGRCPACRSPYDK 62 (810)
Q Consensus 4 d~d~~CPLC~EelD~tD~~F~PC~C-G-----YQIC~fC~~rI~~~a~k~~~~grCPACRr~Yde 62 (810)
..+..|-+|.++-+ ....||.| | +|-|+ .+=++ ....-+||-|+.+|.=
T Consensus 6 ~~~~~CRIC~~~~~---~~~~PC~CkGs~k~VH~sCL---~rWi~----~s~~~~CeiC~~~Y~i 60 (162)
T PHA02825 6 LMDKCCWICKDEYD---VVTNYCNCKNENKIVHKECL---EEWIN----TSKNKSCKICNGPYNI 60 (162)
T ss_pred CCCCeeEecCCCCC---CccCCcccCCCchHHHHHHH---HHHHh----cCCCCcccccCCeEEE
Confidence 55689999999865 24579999 6 56554 33322 2356789999999963
No 178
>PF04564 U-box: U-box domain; InterPro: IPR003613 Quality control of intracellular proteins is essential for cellular homeostasis. Molecular chaperones recognise and contribute to the refolding of misfolded or unfolded proteins, whereas the ubiquitin-proteasome system mediates the degradation of such abnormal proteins. Ubiquitin-protein ligases (E3s) determine the substrate specificity for ubiquitylation and have been classified into HECT and RING-finger families. More recently, however, U-box proteins, which contain a domain (the U box) of about 70 amino acids that is conserved from yeast to humans, have been identified as a new type of E3 []. Members of the U-box family of proteins constitute a class of ubiquitin-protein ligases (E3s) distinct from the HECT-type and RING finger-containing E3 families []. Using yeast two-hybrid technology, all mammalian U-box proteins have been reported to interact with molecular chaperones or co-chaperones, including Hsp90, Hsp70, DnaJc7, EKN1, CRN, and VCP. This suggests that the function of U box-type E3s is to mediate the degradation of unfolded or misfolded proteins in conjunction with molecular chaperones as receptors that recognise such abnormal proteins [, ]. Unlike the RING finger domain, IPR001841 from INTERPRO, that is stabilised by Zn2+ ions coordinated by the cysteines and a histidine, the U-box scaffold is probably stabilised by a system of salt-bridges and hydrogen bonds. The charged and polar residues that participate in this network of bonds are more strongly conserved in the U-box proteins than in classic RING fingers, which supports their role in maintaining the stability of the U box. Thus, the U box appears to have evolved from a RING finger domain by appropriation of a new set of residues required to stabilise its structure, concomitant with the loss of the original, metal-chelating residues [].; GO: 0004842 ubiquitin-protein ligase activity, 0016567 protein ubiquitination, 0000151 ubiquitin ligase complex; PDB: 1T1H_A 2C2L_D 2C2V_V 1WGM_A 2KR4_A 3L1Z_B 3L1X_A 2KRE_A 3M63_A 2QIZ_A ....
Probab=79.90 E-value=1.4 Score=38.32 Aligned_cols=52 Identities=21% Similarity=0.372 Sum_probs=35.5
Q ss_pred CCCCCCcccCCCcCCCCccccCCCchhhhhhHhHhHhhhhhccccCCCCCCCCCCcccccc
Q 003574 6 EKTCPLCAEEMDLTDQQLKPCKCGYEICVWCWHHIMDMAEKEETEGRCPACRSPYDKEKIV 66 (810)
Q Consensus 6 d~~CPLC~EelD~tD~~F~PC~CGYQIC~fC~~rI~~~a~k~~~~grCPACRr~Yde~~i~ 66 (810)
+-.||||.+.|. |--.. +||+-+|+-|+.+-+. ...+.||-||++...+.++
T Consensus 4 ~f~CpIt~~lM~--dPVi~--~~G~tyer~~I~~~l~-----~~~~~~P~t~~~l~~~~l~ 55 (73)
T PF04564_consen 4 EFLCPITGELMR--DPVIL--PSGHTYERSAIERWLE-----QNGGTDPFTRQPLSESDLI 55 (73)
T ss_dssp GGB-TTTSSB-S--SEEEE--TTSEEEEHHHHHHHHC-----TTSSB-TTT-SB-SGGGSE
T ss_pred ccCCcCcCcHhh--CceeC--CcCCEEcHHHHHHHHH-----cCCCCCCCCCCcCCcccce
Confidence 468999999995 55554 5679988999887763 2478999999998876554
No 179
>PF11767 SET_assoc: Histone lysine methyltransferase SET associated; InterPro: IPR024636 The SET domain is a protein-protein interaction domain found in protein lysine methyltransferase enzymes. This entry represents a domain of unknown function which is associated with the SET domain and found in histone lysine methyltransferases [].
Probab=79.43 E-value=2.8 Score=36.78 Aligned_cols=29 Identities=24% Similarity=0.545 Sum_probs=25.6
Q ss_pred EEEEeCCHHHHHHHHHHhCCCccCCcEEE
Q 003574 157 VYITYSKEEEAVRCIQSVHGFVLEGKSLK 185 (810)
Q Consensus 157 AYVTFs~~EDA~rAI~aLDG~~LDGR~LR 185 (810)
-||.|.+.+||++|..+.||..+.+-.|.
T Consensus 36 fYIvF~~~~Ea~rC~~~~~~~~~f~y~m~ 64 (66)
T PF11767_consen 36 FYIVFNDSKEAERCFRAEDGTLFFTYRMQ 64 (66)
T ss_pred EEEEECChHHHHHHHHhcCCCEEEEEEEE
Confidence 49999999999999999999988776554
No 180
>KOG0287 consensus Postreplication repair protein RAD18 [Replication, recombination and repair]
Probab=79.17 E-value=0.7 Score=51.59 Aligned_cols=50 Identities=18% Similarity=0.573 Sum_probs=38.0
Q ss_pred CCCCCCcccCCCcCCCCccccCCCchhhhhhHhHhHhhhhhccccCCCCCCCCCCccccc
Q 003574 6 EKTCPLCAEEMDLTDQQLKPCKCGYEICVWCWHHIMDMAEKEETEGRCPACRSPYDKEKI 65 (810)
Q Consensus 6 d~~CPLC~EelD~tD~~F~PC~CGYQIC~fC~~rI~~~a~k~~~~grCPACRr~Yde~~i 65 (810)
-.-|-||.|-|.+- .--+||+-+|-||....+. ....||+|+.++.|.-.
T Consensus 23 lLRC~IC~eyf~ip----~itpCsHtfCSlCIR~~L~------~~p~CP~C~~~~~Es~L 72 (442)
T KOG0287|consen 23 LLRCGICFEYFNIP----MITPCSHTFCSLCIRKFLS------YKPQCPTCCVTVTESDL 72 (442)
T ss_pred HHHHhHHHHHhcCc----eeccccchHHHHHHHHHhc------cCCCCCceecccchhhh
Confidence 35799999988632 2234999999999988763 57889999987766543
No 181
>KOG0112 consensus Large RNA-binding protein (RRM superfamily) [General function prediction only]
Probab=78.85 E-value=0.54 Score=57.47 Aligned_cols=78 Identities=13% Similarity=0.258 Sum_probs=65.7
Q ss_pred CeEEEeCCCCCCChhHHHHHHHhhccCcceeEEEEeecCCCcccccCCCceEEEEEeCCHHHHHHHHHHhCCCccCCcEE
Q 003574 105 NLVYIVGLPLNLGDEDLLQRREYFGQYGKVLKVSMSRTAAGVIQQFPNNTCSVYITYSKEEEAVRCIQSVHGFVLEGKSL 184 (810)
Q Consensus 105 NLVYV~GLP~~iaEEDLLr~~EyFGQYGkI~KIvInrdk~g~~~q~~~~~gsAYVTFs~~EDA~rAI~aLDG~~LDGR~L 184 (810)
.+||+++|...+++-+| +..|+.||+|.+|.|.+.+.+. ...++||.|.+..-|-+|-..+-|..|.--.+
T Consensus 373 rTLf~Gnl~~kl~esei---R~af~e~gkve~VDiKtP~~~~------esa~~f~~~~n~dmtp~ak~e~s~~~I~~g~~ 443 (975)
T KOG0112|consen 373 RTLFLGNLDSKLTESEI---RPAFDESGKVEEVDIKTPHIKT------ESAYAFVSLLNTDMTPSAKFEESGPLIGNGTH 443 (975)
T ss_pred hhhhhcCcccchhhhhh---hhhhhhhccccccccccCCCCc------ccchhhhhhhccccCcccchhhcCCccccCcc
Confidence 47899999999999999 8999999999999998765432 23468999999999999999999988876677
Q ss_pred EEeecCC
Q 003574 185 KACFGTT 191 (810)
Q Consensus 185 RASfGTT 191 (810)
++-||..
T Consensus 444 r~glG~~ 450 (975)
T KOG0112|consen 444 RIGLGQP 450 (975)
T ss_pred ccccccc
Confidence 7777743
No 182
>KOG2591 consensus c-Mpl binding protein, contains La domain [Signal transduction mechanisms]
Probab=78.53 E-value=3.2 Score=48.98 Aligned_cols=86 Identities=19% Similarity=0.305 Sum_probs=61.2
Q ss_pred cccccccc-cCeEEEeCCCCCCChhHHHHHHHhhcc--CcceeEEEEeecCCCcccccCCCceEEEEEeCCHHHHHHHHH
Q 003574 96 LSSVRVIQ-RNLVYIVGLPLNLGDEDLLQRREYFGQ--YGKVLKVSMSRTAAGVIQQFPNNTCSVYITYSKEEEAVRCIQ 172 (810)
Q Consensus 96 LanvRVIQ-kNLVYV~GLP~~iaEEDLLr~~EyFGQ--YGkI~KIvInrdk~g~~~q~~~~~gsAYVTFs~~EDA~rAI~ 172 (810)
...||-++ |..|.+.-||.....|++ +.+|.- .=+++......+ . .-||||+..+||..|..
T Consensus 166 gekVrp~~kRcIvilREIpettp~e~V---k~lf~~encPk~iscefa~N----------~--nWyITfesd~DAQqAyk 230 (684)
T KOG2591|consen 166 GEKVRPNHKRCIVILREIPETTPIEVV---KALFKGENCPKVISCEFAHN----------D--NWYITFESDTDAQQAYK 230 (684)
T ss_pred ccccccCcceeEEEEeecCCCChHHHH---HHHhccCCCCCceeeeeeec----------C--ceEEEeecchhHHHHHH
Confidence 34456555 457788899999999988 788864 234455444322 1 35999999999999999
Q ss_pred HhCCC--ccCCcEEEEeecCCCCcccccC
Q 003574 173 SVHGF--VLEGKSLKACFGTTKYCHAWLR 199 (810)
Q Consensus 173 aLDG~--~LDGR~LRASfGTTKYCs~FLR 199 (810)
.|-.. +|-||.|.|..-+ |..|+-
T Consensus 231 ylreevk~fqgKpImARIKa---intf~p 256 (684)
T KOG2591|consen 231 YLREEVKTFQGKPIMARIKA---INTFFP 256 (684)
T ss_pred HHHHHHHhhcCcchhhhhhh---hhcccC
Confidence 98764 5889999876544 666554
No 183
>KOG2923 consensus Uncharacterized conserved protein [Function unknown]
Probab=74.52 E-value=1.3 Score=39.04 Aligned_cols=32 Identities=31% Similarity=0.788 Sum_probs=18.8
Q ss_pred CCccccCCCchhhhhhHhHhHhhhhhccccCCCCCCC
Q 003574 21 QQLKPCKCGYEICVWCWHHIMDMAEKEETEGRCPACR 57 (810)
Q Consensus 21 ~~F~PC~CGYQIC~fC~~rI~~~a~k~~~~grCPACR 57 (810)
.-++|||||-+ | .--++..+.-+.-.+||.|-
T Consensus 20 ~y~yPCpCGDr---f--~It~edL~~ge~Va~CpsCS 51 (67)
T KOG2923|consen 20 TYYYPCPCGDR---F--QITLEDLENGEDVARCPSCS 51 (67)
T ss_pred eEEcCCCCCCe---e--eecHHHHhCCCeeecCCCce
Confidence 44699999865 1 11122222344567899994
No 184
>PF07191 zinc-ribbons_6: zinc-ribbons; InterPro: IPR010807 This family consists of several short, hypothetical bacterial proteins of around 70 residues in length. Members of this family 8 highly conserved cysteine residues. The function of the family is unknown.; PDB: 2JRP_A 2JNE_A.
Probab=73.32 E-value=0.47 Score=42.23 Aligned_cols=41 Identities=34% Similarity=0.808 Sum_probs=26.1
Q ss_pred CCCCCCcccCCCcCCCCccccCCCchhhhhhHhHhHhhhhhccccCCCCCCCCCCc
Q 003574 6 EKTCPLCAEEMDLTDQQLKPCKCGYEICVWCWHHIMDMAEKEETEGRCPACRSPYD 61 (810)
Q Consensus 6 d~~CPLC~EelD~tD~~F~PC~CGYQIC~fC~~rI~~~a~k~~~~grCPACRr~Yd 61 (810)
|..||.|-.+|+.+. |--.|..|-.++. ..++||.|..+..
T Consensus 1 e~~CP~C~~~L~~~~--------~~~~C~~C~~~~~-------~~a~CPdC~~~Le 41 (70)
T PF07191_consen 1 ENTCPKCQQELEWQG--------GHYHCEACQKDYK-------KEAFCPDCGQPLE 41 (70)
T ss_dssp --B-SSS-SBEEEET--------TEEEETTT--EEE-------EEEE-TTT-SB-E
T ss_pred CCcCCCCCCccEEeC--------CEEECccccccce-------ecccCCCcccHHH
Confidence 358999999999877 5556888888874 5789999988765
No 185
>PF08274 PhnA_Zn_Ribbon: PhnA Zinc-Ribbon ; InterPro: IPR013987 The PhnA protein family includes the uncharacterised Escherichia coli protein PhnA and its homologues. The E. coli phnA gene is part of a large operon associated with alkylphosphonate uptake and carbon-phosphorus bond cleavage []. The protein is not related to the characterised phosphonoacetate hydrolase designated PhnA []. This entry represents the N-terminal domain of PhnA, which is predicted to form a zinc-ribbon.; PDB: 2AKL_A.
Probab=73.06 E-value=1.2 Score=33.84 Aligned_cols=26 Identities=42% Similarity=0.925 Sum_probs=15.6
Q ss_pred CCCCCcccCCCcCCCCccccC-CCchh
Q 003574 7 KTCPLCAEEMDLTDQQLKPCK-CGYEI 32 (810)
Q Consensus 7 ~~CPLC~EelD~tD~~F~PC~-CGYQI 32 (810)
..||+|-.+....|...+-|+ ||||+
T Consensus 3 p~Cp~C~se~~y~D~~~~vCp~C~~ew 29 (30)
T PF08274_consen 3 PKCPLCGSEYTYEDGELLVCPECGHEW 29 (30)
T ss_dssp ---TTT-----EE-SSSEEETTTTEEE
T ss_pred CCCCCCCCcceeccCCEEeCCcccccC
Confidence 579999999999999999999 99884
No 186
>KOG0297 consensus TNF receptor-associated factor [Signal transduction mechanisms]
Probab=72.75 E-value=2.5 Score=47.68 Aligned_cols=53 Identities=21% Similarity=0.692 Sum_probs=41.1
Q ss_pred ccCCCCCCcccCCCcCCCCccccCCCchhhhhhHhHhHhhhhhccccCCCCCCCCCCccccc
Q 003574 4 EGEKTCPLCAEEMDLTDQQLKPCKCGYEICVWCWHHIMDMAEKEETEGRCPACRSPYDKEKI 65 (810)
Q Consensus 4 d~d~~CPLC~EelD~tD~~F~PC~CGYQIC~fC~~rI~~~a~k~~~~grCPACRr~Yde~~i 65 (810)
+++..||+|+-.+- ..+.+=.||...|.+|...... ....||+||++-.-+..
T Consensus 19 ~~~l~C~~C~~vl~---~p~~~~~cgh~fC~~C~~~~~~------~~~~cp~~~~~~~~~~~ 71 (391)
T KOG0297|consen 19 DENLLCPICMSVLR---DPVQTTTCGHRFCAGCLLESLS------NHQKCPVCRQELTQAEE 71 (391)
T ss_pred cccccCcccccccc---CCCCCCCCCCcccccccchhhc------cCcCCcccccccchhhc
Confidence 45689999999985 3444468999999999998853 27899999997755443
No 187
>COG5216 Uncharacterized conserved protein [Function unknown]
Probab=72.70 E-value=1.2 Score=38.94 Aligned_cols=37 Identities=24% Similarity=0.644 Sum_probs=20.7
Q ss_pred CcCCCCc-cccCCCchhhhhhHhHhHhhhhhccccCCCCCCCC
Q 003574 17 DLTDQQL-KPCKCGYEICVWCWHHIMDMAEKEETEGRCPACRS 58 (810)
Q Consensus 17 D~tD~~F-~PC~CGYQIC~fC~~rI~~~a~k~~~~grCPACRr 58 (810)
+...+.| +|||||-+. .--+..++ .-+.-+|||.|--
T Consensus 15 ~~e~~~ftyPCPCGDRF-eIsLeDl~----~GE~VArCPSCSL 52 (67)
T COG5216 15 SREEKTFTYPCPCGDRF-EISLEDLR----NGEVVARCPSCSL 52 (67)
T ss_pred cCCCceEEecCCCCCEe-EEEHHHhh----CCceEEEcCCceE
Confidence 3344445 899998551 01223333 2345689999943
No 188
>KOG1941 consensus Acetylcholine receptor-associated protein of the synapse (rapsyn) [Extracellular structures]
Probab=70.44 E-value=2.1 Score=48.68 Aligned_cols=49 Identities=29% Similarity=0.737 Sum_probs=43.5
Q ss_pred CCCCCCcccCCCcCCCCccccCCCchhhhhhHhHhHhhhhhccccCCCCCCCC
Q 003574 6 EKTCPLCAEEMDLTDQQLKPCKCGYEICVWCWHHIMDMAEKEETEGRCPACRS 58 (810)
Q Consensus 6 d~~CPLC~EelD~tD~~F~PC~CGYQIC~fC~~rI~~~a~k~~~~grCPACRr 58 (810)
+..|-+|-|-+-+.|-++..-||.+.+=.-|.+-|++ .+..-.||+||+
T Consensus 365 ~L~Cg~CGe~~Glk~e~LqALpCsHIfH~rCl~e~L~----~n~~rsCP~Crk 413 (518)
T KOG1941|consen 365 ELYCGLCGESIGLKNERLQALPCSHIFHLRCLQEILE----NNGTRSCPNCRK 413 (518)
T ss_pred hhhhhhhhhhhcCCcccccccchhHHHHHHHHHHHHH----hCCCCCCccHHH
Confidence 4689999999999999999999999999999999984 356778999994
No 189
>COG5220 TFB3 Cdk activating kinase (CAK)/RNA polymerase II transcription initiation/nucleotide excision repair factor TFIIH, subunit TFB3 [Cell division and chromosome partitioning / Transcription / DNA replication, recombination, and repair]
Probab=70.37 E-value=1.2 Score=47.89 Aligned_cols=50 Identities=24% Similarity=0.658 Sum_probs=37.8
Q ss_pred CCCCCCcccCCCc-CCCCccccC-CCchhhhhhHhHhHhhhhhccccCCCC--CCCCCC
Q 003574 6 EKTCPLCAEEMDL-TDQQLKPCK-CGYEICVWCWHHIMDMAEKEETEGRCP--ACRSPY 60 (810)
Q Consensus 6 d~~CPLC~EelD~-tD~~F~PC~-CGYQIC~fC~~rI~~~a~k~~~~grCP--ACRr~Y 60 (810)
|..||+|--.-=+ -|..|+-=| |=++||--|.+||.. ...+.|| +|-+-.
T Consensus 10 d~~CPvCksDrYLnPdik~linPECyHrmCESCvdRIFs-----~GpAqCP~~gC~kIL 63 (314)
T COG5220 10 DRRCPVCKSDRYLNPDIKILINPECYHRMCESCVDRIFS-----RGPAQCPYKGCGKIL 63 (314)
T ss_pred cccCCccccccccCCCeEEEECHHHHHHHHHHHHHHHhc-----CCCCCCCCccHHHHH
Confidence 4689999765422 356666667 999999999999973 4678999 997643
No 190
>KOG0823 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=67.30 E-value=3.9 Score=43.62 Aligned_cols=58 Identities=22% Similarity=0.560 Sum_probs=41.3
Q ss_pred cccCCCCCCcccCCCcCCCCccccCCCchhhhhhHhHhHhhhhhccccCCCCCCCCCCccccccc
Q 003574 3 DEGEKTCPLCAEEMDLTDQQLKPCKCGYEICVWCWHHIMDMAEKEETEGRCPACRSPYDKEKIVG 67 (810)
Q Consensus 3 Dd~d~~CPLC~EelD~tD~~F~PC~CGYQIC~fC~~rI~~~a~k~~~~grCPACRr~Yde~~i~~ 67 (810)
|...-+|.||.+.-. | .... -||+-.|+=|+|+-+.. ......||-|+...+.++++-
T Consensus 44 ~~~~FdCNICLd~ak--d-PVvT-lCGHLFCWpClyqWl~~---~~~~~~cPVCK~~Vs~~~vvP 101 (230)
T KOG0823|consen 44 DGGFFDCNICLDLAK--D-PVVT-LCGHLFCWPCLYQWLQT---RPNSKECPVCKAEVSIDTVVP 101 (230)
T ss_pred CCCceeeeeeccccC--C-CEEe-ecccceehHHHHHHHhh---cCCCeeCCccccccccceEEe
Confidence 455568999976542 2 2333 38999999999988753 223455899999999888863
No 191
>PF15023 DUF4523: Protein of unknown function (DUF4523)
Probab=67.24 E-value=22 Score=36.27 Aligned_cols=70 Identities=11% Similarity=0.247 Sum_probs=50.0
Q ss_pred eEEEeCCCCCCChhHHHHH-HHhhccCcceeEEEEeecCCCcccccCCCceEEEEEeCCHHHHHHHHHHhCCCccCCcEE
Q 003574 106 LVYIVGLPLNLGDEDLLQR-REYFGQYGKVLKVSMSRTAAGVIQQFPNNTCSVYITYSKEEEAVRCIQSVHGFVLEGKSL 184 (810)
Q Consensus 106 LVYV~GLP~~iaEEDLLr~-~EyFGQYGkI~KIvInrdk~g~~~q~~~~~gsAYVTFs~~EDA~rAI~aLDG~~LDGR~L 184 (810)
+|.|.=|..++...+=|++ -...+.||+|..|.+-- +-+|-|+|.+...|-+|+.+... ..-|..+
T Consensus 88 TIVVRWlkknm~~~edl~sV~~~Ls~fGpI~SVT~cG------------rqsavVvF~d~~SAC~Av~Af~s-~~pgtm~ 154 (166)
T PF15023_consen 88 TIVVRWLKKNMQPTEDLKSVIQRLSVFGPIQSVTLCG------------RQSAVVVFKDITSACKAVSAFQS-RAPGTMF 154 (166)
T ss_pred eEEeehhhhcCChHHHHHHHHHHHHhcCCcceeeecC------------CceEEEEehhhHHHHHHHHhhcC-CCCCceE
Confidence 4566555555443332333 56788999999987641 23689999999999999998766 5677888
Q ss_pred EEee
Q 003574 185 KACF 188 (810)
Q Consensus 185 RASf 188 (810)
+++|
T Consensus 155 qCsW 158 (166)
T PF15023_consen 155 QCSW 158 (166)
T ss_pred Eeec
Confidence 8776
No 192
>COG5222 Uncharacterized conserved protein, contains RING Zn-finger [General function prediction only]
Probab=66.63 E-value=7.6 Score=43.19 Aligned_cols=68 Identities=28% Similarity=0.722 Sum_probs=40.7
Q ss_pred CCCCCcccCCCcCCCCcc-ccCCCchhhhhhHhHhHhhhhhccccCCCCCCCCCCccccccccccChhH---HHHHHHhh
Q 003574 7 KTCPLCAEEMDLTDQQLK-PCKCGYEICVWCWHHIMDMAEKEETEGRCPACRSPYDKEKIVGMAAKCES---MERKMKSQ 82 (810)
Q Consensus 7 ~~CPLC~EelD~tD~~F~-PC~CGYQIC~fC~~rI~~~a~k~~~~grCPACRr~Yde~~i~~~~~~~e~---~~kkqK~q 82 (810)
..||||--.|- ...+ || ||.-+|--|....+ -+.+..||+|.|. +--+....++.+. .|+..|+|
T Consensus 275 LkCplc~~Llr---np~kT~c-C~~~fc~eci~~al-----~dsDf~CpnC~rk--dvlld~l~pD~dk~~EvE~~lkkq 343 (427)
T COG5222 275 LKCPLCHCLLR---NPMKTPC-CGHTFCDECIGTAL-----LDSDFKCPNCSRK--DVLLDGLTPDIDKKLEVEKALKKQ 343 (427)
T ss_pred ccCcchhhhhh---CcccCcc-ccchHHHHHHhhhh-----hhccccCCCcccc--cchhhccCccHHHHHHHHHHHHHH
Confidence 57999987663 1111 34 89999999998554 2468899999771 0011233444432 45555555
Q ss_pred hcc
Q 003574 83 KSK 85 (810)
Q Consensus 83 k~K 85 (810)
.+|
T Consensus 344 ~~~ 346 (427)
T COG5222 344 RKK 346 (427)
T ss_pred HHh
Confidence 554
No 193
>KOG1812 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=65.28 E-value=4.1 Score=46.01 Aligned_cols=60 Identities=25% Similarity=0.501 Sum_probs=41.4
Q ss_pred CCCCCCcccCCCcCCCCccccCCCchhhhhhHhHhHhhhhhccccCCCC--CCCCCCccccc
Q 003574 6 EKTCPLCAEEMDLTDQQLKPCKCGYEICVWCWHHIMDMAEKEETEGRCP--ACRSPYDKEKI 65 (810)
Q Consensus 6 d~~CPLC~EelD~tD~~F~PC~CGYQIC~fC~~rI~~~a~k~~~~grCP--ACRr~Yde~~i 65 (810)
..+|.+|+.+.--.|.-|..+.|++++|..||.+-.+.........+|| .|-.....+..
T Consensus 146 ~~~C~iC~~e~~~~~~~f~~~~C~H~fC~~C~k~~iev~~~~~~~~~C~~~~C~~~l~~~~c 207 (384)
T KOG1812|consen 146 KEECGICFVEDPEAEDMFSVLKCGHRFCKDCVKQHIEVKLLSGTVIRCPHDGCESRLTLESC 207 (384)
T ss_pred cccCccCccccccHhhhHHHhcccchhhhHHhHHHhhhhhccCCCccCCCCCCCccCCHHHH
Confidence 4689999944444556666999999999999997665444445566776 46554444433
No 194
>KOG2193 consensus IGF-II mRNA-binding protein IMP, contains RRM and KH domains [RNA processing and modification; General function prediction only]
Probab=64.64 E-value=0.39 Score=54.75 Aligned_cols=70 Identities=27% Similarity=0.412 Sum_probs=56.8
Q ss_pred EEEeCCCCCCChhHHHHHHHhhccCcceeEEEE-eecCCCcccccCCCceEEEEEeCCHHHHHHHHHHhCCCccCCcEEE
Q 003574 107 VYIVGLPLNLGDEDLLQRREYFGQYGKVLKVSM-SRTAAGVIQQFPNNTCSVYITYSKEEEAVRCIQSVHGFVLEGKSLK 185 (810)
Q Consensus 107 VYV~GLP~~iaEEDLLr~~EyFGQYGkI~KIvI-nrdk~g~~~q~~~~~gsAYVTFs~~EDA~rAI~aLDG~~LDGR~LR 185 (810)
+-|.++|+.+.-|-| ..+.++||.+..+.. +.+..+ ..+-|||...+.+..||..++|.++....++
T Consensus 83 ~Qirnippql~wevl---d~Ll~qyg~ve~~eqvnt~~et---------avvnvty~~~~~~~~ai~kl~g~Q~en~~~k 150 (584)
T KOG2193|consen 83 IQIRNIPPQLQWEVL---DSLLAQYGTVENCEQVNTDSET---------AVVNVTYSAQQQHRQAIHKLNGPQLENQHLK 150 (584)
T ss_pred hhHhcCCHHHHHHHH---HHHHhccCCHhHhhhhccchHH---------HHHHHHHHHHHHHHHHHHhhcchHhhhhhhh
Confidence 567788888887555 789999999998754 443332 2346899999999999999999999999999
Q ss_pred Eee
Q 003574 186 ACF 188 (810)
Q Consensus 186 ASf 188 (810)
+.|
T Consensus 151 ~~Y 153 (584)
T KOG2193|consen 151 VGY 153 (584)
T ss_pred ccc
Confidence 887
No 195
>PF14608 zf-CCCH_2: Zinc finger C-x8-C-x5-C-x3-H type
Probab=63.30 E-value=4.6 Score=27.48 Aligned_cols=16 Identities=38% Similarity=0.841 Sum_probs=12.5
Q ss_pred cccccCCCCCCCC-CCcccc
Q 003574 194 CHAWLRNVPCTNP-DCLYLH 212 (810)
Q Consensus 194 Cs~FLRg~~C~N~-dC~YLH 212 (810)
|.+|.. |.|. +|.|.|
T Consensus 2 Ck~~~~---C~~~~~C~f~H 18 (19)
T PF14608_consen 2 CKFGPN---CTNGDNCPFSH 18 (19)
T ss_pred CcCcCC---CCCCCcCccCC
Confidence 554433 9999 999999
No 196
>KOG4849 consensus mRNA cleavage factor I subunit/CPSF subunit [RNA processing and modification]
Probab=63.22 E-value=6.5 Score=44.44 Aligned_cols=78 Identities=12% Similarity=0.152 Sum_probs=54.9
Q ss_pred CeEEEeCCCCCCChhHHHHHHHhhccCcceeEEEEeecCCCcccccCCCceEEEEEeCCHHHHHHHHHHhCCCccCCcE-
Q 003574 105 NLVYIVGLPLNLGDEDLLQRREYFGQYGKVLKVSMSRTAAGVIQQFPNNTCSVYITYSKEEEAVRCIQSVHGFVLEGKS- 183 (810)
Q Consensus 105 NLVYV~GLP~~iaEEDLLr~~EyFGQYGkI~KIvInrdk~g~~~q~~~~~gsAYVTFs~~EDA~rAI~aLDG~~LDGR~- 183 (810)
-.+||+||-|..+++|||+--.-.|-- .|.+|.+..++..+ ..+|+|.|.........+-+.-|--.+|.|.-
T Consensus 81 ~~~YvGNL~W~TTD~DL~~A~~S~G~~-~~~dmKFFENR~NG-----QSKG~AL~~~~SdAa~Kq~MeiLP~k~iHGQ~P 154 (498)
T KOG4849|consen 81 YCCYVGNLLWYTTDADLLKALQSTGLA-QFADMKFFENRTNG-----QSKGYALLVLNSDAAVKQTMEILPTKTIHGQSP 154 (498)
T ss_pred EEEEecceeEEeccHHHHHHHHhhhHH-HHhhhhhhhcccCC-----cccceEEEEecchHHHHHHHHhcccceecCCCC
Confidence 578999999999999998643333322 45566555554433 25678999998888778888888888888863
Q ss_pred EEEee
Q 003574 184 LKACF 188 (810)
Q Consensus 184 LRASf 188 (810)
+..+|
T Consensus 155 ~V~~~ 159 (498)
T KOG4849|consen 155 TVLSY 159 (498)
T ss_pred eeecc
Confidence 44444
No 197
>KOG4185 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=61.46 E-value=6 Score=42.10 Aligned_cols=49 Identities=29% Similarity=0.686 Sum_probs=39.0
Q ss_pred CCCCCcccCCCcCCCCc--cccCCCchhhhhhHhHhHhhhhhccccCCCCCCCCCC
Q 003574 7 KTCPLCAEEMDLTDQQL--KPCKCGYEICVWCWHHIMDMAEKEETEGRCPACRSPY 60 (810)
Q Consensus 7 ~~CPLC~EelD~tD~~F--~PC~CGYQIC~fC~~rI~~~a~k~~~~grCPACRr~Y 60 (810)
..|-+|-++++.-|..- +--+||.-||..|..++. .+....||-||.+-
T Consensus 4 ~~c~~c~~~~s~~~~~~~p~~l~c~h~~c~~c~~~l~-----~~~~i~cpfcR~~~ 54 (296)
T KOG4185|consen 4 PECEICNEDYSSEDGDHIPRVLKCGHTICQNCASKLL-----GNSRILCPFCRETT 54 (296)
T ss_pred CceeecCccccccCcccCCcccccCceehHhHHHHHh-----cCceeeccCCCCcc
Confidence 57999999997664333 445699999999999997 35677899999984
No 198
>PF11793 FANCL_C: FANCL C-terminal domain; PDB: 3K1L_A.
Probab=61.26 E-value=3.9 Score=35.71 Aligned_cols=55 Identities=25% Similarity=0.566 Sum_probs=19.4
Q ss_pred CCCCCCcccCCC-cCCCCcccc---CCCc---hhhhhhHhHhHhhhhh---ccccCCCCCCCCCCc
Q 003574 6 EKTCPLCAEEMD-LTDQQLKPC---KCGY---EICVWCWHHIMDMAEK---EETEGRCPACRSPYD 61 (810)
Q Consensus 6 d~~CPLC~EelD-~tD~~F~PC---~CGY---QIC~fC~~rI~~~a~k---~~~~grCPACRr~Yd 61 (810)
+..|+||++.+. .....-.-| .|+. ..|+.=|=+=.. ..+ .-..|.||.|++++.
T Consensus 2 ~~~C~IC~~~~~~~~~~p~~~C~n~~C~~~fH~~CL~~wf~~~~-~~~~~~~~~~G~CP~C~~~i~ 66 (70)
T PF11793_consen 2 ELECGICYSYRLDDGEIPDVVCPNPSCGKKFHLLCLSEWFLSLE-KSRQSFIPIFGECPYCSSPIS 66 (70)
T ss_dssp --S-SSS--SS-TT-----B--S-TT----B-SGGGHHHHHHHH-SSS-TTT--EEE-TTT-SEEE
T ss_pred CCCCCcCCcEecCCCCcCceEcCCcccCCHHHHHHHHHHHHHcc-cCCeeecccccCCcCCCCeee
Confidence 468999999865 322333444 5753 456655532111 000 123577999998653
No 199
>KOG0105 consensus Alternative splicing factor ASF/SF2 (RRM superfamily) [RNA processing and modification]
Probab=58.33 E-value=24 Score=37.34 Aligned_cols=61 Identities=18% Similarity=0.277 Sum_probs=52.0
Q ss_pred cCeEEEeCCCCCCChhHHHHHHHhhccCcceeEEEEeecCCCcccccCCCceEEEEEeCCHHHHHHHHHHhCCCcc
Q 003574 104 RNLVYIVGLPLNLGDEDLLQRREYFGQYGKVLKVSMSRTAAGVIQQFPNNTCSVYITYSKEEEAVRCIQSVHGFVL 179 (810)
Q Consensus 104 kNLVYV~GLP~~iaEEDLLr~~EyFGQYGkI~KIvInrdk~g~~~q~~~~~gsAYVTFs~~EDA~rAI~aLDG~~L 179 (810)
...|.|.|||+.-.=.|| ++..-+-|.|.-..+.++- .+-|.|.+.||-+-||..|+...+
T Consensus 115 e~RVvVsGLp~SgSWQDL---KDHmReaGdvCfadv~rDg------------~GvV~~~r~eDMkYAvr~ld~~~~ 175 (241)
T KOG0105|consen 115 EYRVVVSGLPPSGSWQDL---KDHMREAGDVCFADVQRDG------------VGVVEYLRKEDMKYAVRKLDDQKF 175 (241)
T ss_pred ceeEEEecCCCCCchHHH---HHHHHhhCCeeeeeeeccc------------ceeeeeeehhhHHHHHHhhccccc
Confidence 457899999999998899 8999999999988887652 357999999999999999887655
No 200
>KOG4574 consensus RNA-binding protein (contains RRM and Pumilio-like repeats) [General function prediction only]
Probab=57.91 E-value=6.8 Score=48.34 Aligned_cols=83 Identities=20% Similarity=0.304 Sum_probs=65.8
Q ss_pred ccccccccccCeEEEeCCCCCCChhHHHHHHHhhccCcceeEEEEeecCCCcccccCCCceEEEEEeCCHHHHHHHHHHh
Q 003574 95 QLSSVRVIQRNLVYIVGLPLNLGDEDLLQRREYFGQYGKVLKVSMSRTAAGVIQQFPNNTCSVYITYSKEEEAVRCIQSV 174 (810)
Q Consensus 95 ~LanvRVIQkNLVYV~GLP~~iaEEDLLr~~EyFGQYGkI~KIvInrdk~g~~~q~~~~~gsAYVTFs~~EDA~rAI~aL 174 (810)
.+.+|--.|... |+-+.+-..+---| .-+|.+||+|+.+...++.. .|-|.|...|.|..|..++
T Consensus 290 sisnv~plqp~~-~~~nn~v~~tSssL---~~l~s~yg~v~s~wtlr~~N-----------~alvs~~s~~sai~a~dAl 354 (1007)
T KOG4574|consen 290 SISNVFPLQPKQ-SLENNAVNLTSSSL---ATLCSDYGSVASAWTLRDLN-----------MALVSFSSVESAILALDAL 354 (1007)
T ss_pred eecccccCcchh-hhhcccccchHHHH---HHHHHhhcchhhheeccccc-----------chhhhhHHHHHHHHhhhhh
Confidence 455555555443 66666777776555 88999999999999887642 4789999999999999999
Q ss_pred CCCcc--CCcEEEEeecCCC
Q 003574 175 HGFVL--EGKSLKACFGTTK 192 (810)
Q Consensus 175 DG~~L--DGR~LRASfGTTK 192 (810)
.|..+ -|-+.||.|+.+-
T Consensus 355 ~gkevs~~g~Ps~V~~ak~~ 374 (1007)
T KOG4574|consen 355 QGKEVSVTGAPSRVSFAKTL 374 (1007)
T ss_pred cCCcccccCCceeEEecccc
Confidence 99975 5889999998775
No 201
>smart00356 ZnF_C3H1 zinc finger.
Probab=56.45 E-value=9.4 Score=26.52 Aligned_cols=23 Identities=26% Similarity=0.704 Sum_probs=17.0
Q ss_pred CCCcccccCCCCCC-CCCCcccccC
Q 003574 191 TKYCHAWLRNVPCT-NPDCLYLHEV 214 (810)
Q Consensus 191 TKYCs~FLRg~~C~-N~dC~YLHE~ 214 (810)
+..|..|+.| .|. .+.|.|+|+.
T Consensus 4 ~~~C~~~~~g-~C~~g~~C~~~H~~ 27 (27)
T smart00356 4 TELCKFFKRG-YCPYGDRCKFAHPL 27 (27)
T ss_pred CCcCcCccCC-CCCCCCCcCCCCcC
Confidence 4579999555 566 4689999974
No 202
>KOG2879 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=55.14 E-value=9.9 Score=41.81 Aligned_cols=50 Identities=24% Similarity=0.521 Sum_probs=36.9
Q ss_pred ccCCCCCCcccCCCcCCCCccccCCCchhhhhhHhHhHhhhhhccccCCCCCCCCCC
Q 003574 4 EGEKTCPLCAEEMDLTDQQLKPCKCGYEICVWCWHHIMDMAEKEETEGRCPACRSPY 60 (810)
Q Consensus 4 d~d~~CPLC~EelD~tD~~F~PC~CGYQIC~fC~~rI~~~a~k~~~~grCPACRr~Y 60 (810)
..+.+||+|-|.-. ..+.-=+||+..|-+|...-+. .+.--.||+|-.+-
T Consensus 237 t~~~~C~~Cg~~Pt---iP~~~~~C~HiyCY~Ci~ts~~----~~asf~Cp~Cg~~~ 286 (298)
T KOG2879|consen 237 TSDTECPVCGEPPT---IPHVIGKCGHIYCYYCIATSRL----WDASFTCPLCGENV 286 (298)
T ss_pred cCCceeeccCCCCC---CCeeeccccceeehhhhhhhhc----chhhcccCccCCCC
Confidence 34679999999875 5566667999999999886653 12346899996643
No 203
>PF07576 BRAP2: BRCA1-associated protein 2; InterPro: IPR011422 These proteins include BRCA1-associated protein 2 (BRAP2), which binds nuclear localisation signals (NLSs) in vitro and in yeast two-hybrid screening []. These proteins share a region of sequence similarity at their N terminus. They also have IPR001607 from INTERPRO at the C terminus.
Probab=54.20 E-value=72 Score=30.59 Aligned_cols=66 Identities=18% Similarity=0.379 Sum_probs=47.1
Q ss_pred CeEEEeCCCCCCChhHHHHHHHhhcc-Cc-ceeEEEEeecCCCcccccCCCceEEEEEeCCHHHHHHHHHHhCCCccC
Q 003574 105 NLVYIVGLPLNLGDEDLLQRREYFGQ-YG-KVLKVSMSRTAAGVIQQFPNNTCSVYITYSKEEEAVRCIQSVHGFVLE 180 (810)
Q Consensus 105 NLVYV~GLP~~iaEEDLLr~~EyFGQ-YG-kI~KIvInrdk~g~~~q~~~~~gsAYVTFs~~EDA~rAI~aLDG~~LD 180 (810)
..|-|...|+.+..-+.| .+||. +- .|..++|.++... .++-+-|.|.+.++|..-....||..+.
T Consensus 13 ~~~~~l~vp~~~~~~d~l---~~f~~~~~~~i~~~riird~~p-------nrymVLikF~~~~~Ad~Fy~~fNGk~Fn 80 (110)
T PF07576_consen 13 STLCCLAVPPYMTPSDFL---LFFGAPFREDIEHIRIIRDGTP-------NRYMVLIKFRDQESADEFYEEFNGKPFN 80 (110)
T ss_pred ceEEEEEeCcccccHHHH---HHhhhcccccEEEEEEeeCCCC-------ceEEEEEEECCHHHHHHHHHHhCCCccC
Confidence 556666666666554443 24444 33 4667788876542 3789999999999999999999998864
No 204
>COG5183 SSM4 Protein involved in mRNA turnover and stability [RNA processing and modification]
Probab=54.06 E-value=9.2 Score=47.15 Aligned_cols=55 Identities=27% Similarity=0.689 Sum_probs=41.9
Q ss_pred ccCCCCCCcccCCCcCCCCccccCCC------chhhhhhHhHhHhhhhhccccCCCCCCCCCCccccc
Q 003574 4 EGEKTCPLCAEEMDLTDQQLKPCKCG------YEICVWCWHHIMDMAEKEETEGRCPACRSPYDKEKI 65 (810)
Q Consensus 4 d~d~~CPLC~EelD~tD~~F~PC~CG------YQIC~fC~~rI~~~a~k~~~~grCPACRr~Yde~~i 65 (810)
||+..|.+|--|=-..|..|-||+|. +|-|+-=|-. .....+|--|.-+|.=++|
T Consensus 10 ~d~~~CRICr~e~~~d~pLfhPCKC~GSIkYiH~eCL~eW~~-------~s~~~kCdiChy~~~Fk~I 70 (1175)
T COG5183 10 EDKRSCRICRTEDIRDDPLFHPCKCSGSIKYIHRECLMEWME-------CSGTKKCDICHYEYKFKDI 70 (1175)
T ss_pred ccchhceeecCCCCCCCcCcccccccchhHHHHHHHHHHHHh-------cCCCcceeeecceeeeeee
Confidence 34589999998888899999999994 3556555543 2357789999998876655
No 205
>COG5219 Uncharacterized conserved protein, contains RING Zn-finger [General function prediction only]
Probab=53.97 E-value=4.7 Score=50.30 Aligned_cols=50 Identities=28% Similarity=0.668 Sum_probs=31.9
Q ss_pred ccCCCCCCcccCCCcCCCCc--cccCCCchhhhhhHhHhHh----hhhhccccCCCCCCCCCC
Q 003574 4 EGEKTCPLCAEEMDLTDQQL--KPCKCGYEICVWCWHHIMD----MAEKEETEGRCPACRSPY 60 (810)
Q Consensus 4 d~d~~CPLC~EelD~tD~~F--~PC~CGYQIC~fC~~rI~~----~a~k~~~~grCPACRr~Y 60 (810)
++-++|++|+.-++..|+.+ +-|+ - |-|++-. --.+.....+||-||..+
T Consensus 1467 sG~eECaICYsvL~~vdr~lPskrC~--T-----CknKFH~~CLyKWf~Ss~~s~CPlCRsei 1522 (1525)
T COG5219 1467 SGHEECAICYSVLDMVDRSLPSKRCA--T-----CKNKFHTRCLYKWFASSARSNCPLCRSEI 1522 (1525)
T ss_pred CCcchhhHHHHHHHHHhccCCccccc--h-----hhhhhhHHHHHHHHHhcCCCCCCcccccc
Confidence 45689999999999999988 5565 0 1110000 000235688999999654
No 206
>KOG0804 consensus Cytoplasmic Zn-finger protein BRAP2 (BRCA1 associated protein) [General function prediction only]
Probab=53.83 E-value=7.3 Score=45.17 Aligned_cols=25 Identities=32% Similarity=0.672 Sum_probs=18.5
Q ss_pred cCCCCCCcccCCCcCCCCccccCCC
Q 003574 5 GEKTCPLCAEEMDLTDQQLKPCKCG 29 (810)
Q Consensus 5 ~d~~CPLC~EelD~tD~~F~PC~CG 29 (810)
+-++||.|.|.||..=.-+.|-.|.
T Consensus 174 ELPTCpVCLERMD~s~~gi~t~~c~ 198 (493)
T KOG0804|consen 174 ELPTCPVCLERMDSSTTGILTILCN 198 (493)
T ss_pred cCCCcchhHhhcCccccceeeeecc
Confidence 4579999999999766555665553
No 207
>KOG0824 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=53.79 E-value=10 Score=42.23 Aligned_cols=52 Identities=23% Similarity=0.455 Sum_probs=35.1
Q ss_pred cCCCCCCcccCCCcCCCCccccCCCchhhhhhHhHhHhhhhhccccCCCCCCCCCCccccc
Q 003574 5 GEKTCPLCAEEMDLTDQQLKPCKCGYEICVWCWHHIMDMAEKEETEGRCPACRSPYDKEKI 65 (810)
Q Consensus 5 ~d~~CPLC~EelD~tD~~F~PC~CGYQIC~fC~~rI~~~a~k~~~~grCPACRr~Yde~~i 65 (810)
-+.+|++|...+-. =.--.|++..|.-|...-. + +..+-|+-||+|+|+.-+
T Consensus 6 ~~~eC~IC~nt~n~----Pv~l~C~HkFCyiCiKGsy----~-ndk~~CavCR~pids~i~ 57 (324)
T KOG0824|consen 6 KKKECLICYNTGNC----PVNLYCFHKFCYICIKGSY----K-NDKKTCAVCRFPIDSTID 57 (324)
T ss_pred cCCcceeeeccCCc----Cccccccchhhhhhhcchh----h-cCCCCCceecCCCCcchh
Confidence 35789999998841 1444688886666655432 1 233449999999998743
No 208
>smart00744 RINGv The RING-variant domain is a C4HC3 zinc-finger like motif found in a number of cellular and viral proteins. Some of these proteins have been shown both in vivo and in vitro to have ubiquitin E3 ligase activity. The RING-variant domain is reminiscent of both the RING and the PHD domains and may represent an evolutionary intermediate. To describe this domain the term PHD/LAP domain has been used in the past. Extended description: The RING-variant (RINGv) domain contains a C4HC3 zinc-finger-like motif similar to the PHD domain, while some of the spacing between the Cys/His residues follow a pattern somewhat closer to that found in the RING domain. The RINGv domain, similar to the RING, PHD and LIM domains, is thought to bind two zinc ions co-ordinated by the highly conserved Cys and His residues. RING variant domain: C-x (2) -C-x(10-45)-C-x (1) -C-x (7) -H-x(2)-C-x(11-25)-C-x(2)-C As opposed to a PHD: C-x(1-2) -C-x (7-13)-C-x(2-4)-C-x(4-5)-H-x(2)-C-x(10-21)-C-x(2)-C Class
Probab=52.35 E-value=16 Score=30.12 Aligned_cols=46 Identities=24% Similarity=0.647 Sum_probs=29.4
Q ss_pred CCCCcccCCCcCCCCccccCCCc---hhhhhhHhHhHhhhhhccccCCCCCCC
Q 003574 8 TCPLCAEEMDLTDQQLKPCKCGY---EICVWCWHHIMDMAEKEETEGRCPACR 57 (810)
Q Consensus 8 ~CPLC~EelD~tD~~F~PC~CGY---QIC~fC~~rI~~~a~k~~~~grCPACR 57 (810)
.|.||.+..+..+..+.||.|.- -+=.-|+.+=+.. .....||-|.
T Consensus 1 ~CrIC~~~~~~~~~l~~PC~C~G~~~~vH~~Cl~~W~~~----~~~~~C~iC~ 49 (49)
T smart00744 1 ICRICHDEGDEGDPLVSPCRCKGSLKYVHQECLERWINE----SGNKTCEICK 49 (49)
T ss_pred CccCCCCCCCCCCeeEeccccCCchhHHHHHHHHHHHHH----cCCCcCCCCC
Confidence 58999997777888899999941 1113344444321 1244899884
No 209
>KOG4210 consensus Nuclear localization sequence binding protein [Transcription]
Probab=51.09 E-value=8.7 Score=41.89 Aligned_cols=109 Identities=13% Similarity=0.159 Sum_probs=77.2
Q ss_pred CeEEEeCCCCCCChhHHHHHHHhhccCcceeEEEEeecCCCcccccCCCceEEEEEeCCHHHHHHHHHHhCCCccCCcEE
Q 003574 105 NLVYIVGLPLNLGDEDLLQRREYFGQYGKVLKVSMSRTAAGVIQQFPNNTCSVYITYSKEEEAVRCIQSVHGFVLEGKSL 184 (810)
Q Consensus 105 NLVYV~GLP~~iaEEDLLr~~EyFGQYGkI~KIvInrdk~g~~~q~~~~~gsAYVTFs~~EDA~rAI~aLDG~~LDGR~L 184 (810)
...||+.+.+.+.+.+. ..+|-.+|.+....+....... + ..++.||-|..++.+..|++..-...++++.+
T Consensus 89 ~~~f~g~~s~~~e~~~~---~~~~~~~g~~~~~~~S~~~~~~----~-sk~~~s~~f~~ks~~~~~l~~s~~~~~~~~~~ 160 (285)
T KOG4210|consen 89 STFFVGELSENIEESED---DNFSSEAGLRVDARSSSLEDSL----S-SKGGLSVHFAGKSQFFAALEESGSKVLDGNKG 160 (285)
T ss_pred ccccccccccchhhccc---cccchhhcCcccchhhhhcccc----c-cccceeeccccHHHHHHHHHhhhccccccccc
Confidence 45799999888877756 6789999988888776644332 2 34567999999999999998766678999999
Q ss_pred EEeecCCCCcccccCCCCCCCC-----CCccccc-CCCCCCCccHHHHH
Q 003574 185 KACFGTTKYCHAWLRNVPCTNP-----DCLYLHE-VGSQEDSFTKDEII 227 (810)
Q Consensus 185 RASfGTTKYCs~FLRg~~C~N~-----dC~YLHE-~g~~~DsfTKeEm~ 227 (810)
...+.+..- -+.|+.. .+-+.=. .+.-....|++++.
T Consensus 161 ~~dl~~~~~------~~~~n~~~~~~~~~s~~~~~~~~~~f~~~~d~~~ 203 (285)
T KOG4210|consen 161 EKDLNTRRG------LRPKNKLSRLSSGPSDTIFFVGELDFSLTRDDLK 203 (285)
T ss_pred cCccccccc------ccccchhcccccCccccceeecccccccchHHHh
Confidence 988876653 2333331 3333333 34455678888877
No 210
>KOG1815 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=50.05 E-value=25 Score=40.22 Aligned_cols=67 Identities=22% Similarity=0.613 Sum_probs=46.6
Q ss_pred cccCCCCCCcccCCCcCCCCccccCCCchhhhhhHhHhHhhhhhccccC--CCC--CCCCCCccccccccccCh
Q 003574 3 DEGEKTCPLCAEEMDLTDQQLKPCKCGYEICVWCWHHIMDMAEKEETEG--RCP--ACRSPYDKEKIVGMAAKC 72 (810)
Q Consensus 3 Dd~d~~CPLC~EelD~tD~~F~PC~CGYQIC~fC~~rI~~~a~k~~~~g--rCP--ACRr~Yde~~i~~~~~~~ 72 (810)
+..+..|.+|++..+. .+.-=.||+.+|..||..-+....-.+..+ .|| .|+..-++++|.......
T Consensus 67 ~~~~~~c~ic~~~~~~---~~~~~~c~H~~c~~cw~~yl~~kI~~~~~~~i~cp~~~C~a~v~~~~i~~~~s~~ 137 (444)
T KOG1815|consen 67 KKGDVQCGICVESYDG---EIIGLGCGHPFCPPCWTGYLGTKIHEGEEAKIKCPAHGCPALVGEDTVEKLVSDK 137 (444)
T ss_pred CCccccCCcccCCCcc---hhhhcCCCcHHHHHHHHHHhhheeeccccccccCCCCCccccCCCceeeeecCCH
Confidence 3456899999999975 344446899999999997554322233332 466 799988988887665443
No 211
>KOG0978 consensus E3 ubiquitin ligase involved in syntaxin degradation [Posttranslational modification, protein turnover, chaperones]
Probab=49.53 E-value=11 Score=45.95 Aligned_cols=51 Identities=20% Similarity=0.614 Sum_probs=36.8
Q ss_pred CCCCCcccCCCcCCCCccccCCCchhhhhhHhHhHhhhhhccccCCCCCCCCCCcccccc
Q 003574 7 KTCPLCAEEMDLTDQQLKPCKCGYEICVWCWHHIMDMAEKEETEGRCPACRSPYDKEKIV 66 (810)
Q Consensus 7 ~~CPLC~EelD~tD~~F~PC~CGYQIC~fC~~rI~~~a~k~~~~grCPACRr~Yde~~i~ 66 (810)
..||.|-... +.-.-=+||+-+|--|.....++ -.-+||.|-++|....|.
T Consensus 644 LkCs~Cn~R~----Kd~vI~kC~H~FC~~Cvq~r~et-----RqRKCP~Cn~aFganDv~ 694 (698)
T KOG0978|consen 644 LKCSVCNTRW----KDAVITKCGHVFCEECVQTRYET-----RQRKCPKCNAAFGANDVH 694 (698)
T ss_pred eeCCCccCch----hhHHHHhcchHHHHHHHHHHHHH-----hcCCCCCCCCCCCccccc
Confidence 4799997433 22333469999888888876653 367899999999876553
No 212
>KOG1785 consensus Tyrosine kinase negative regulator CBL [Defense mechanisms]
Probab=48.05 E-value=9.6 Score=43.82 Aligned_cols=46 Identities=33% Similarity=0.767 Sum_probs=35.4
Q ss_pred CCCCCcccCCCcCCCCccccCCCchhhhhhHhHhHhhhhhccccCCCCCCCCCC
Q 003574 7 KTCPLCAEEMDLTDQQLKPCKCGYEICVWCWHHIMDMAEKEETEGRCPACRSPY 60 (810)
Q Consensus 7 ~~CPLC~EelD~tD~~F~PC~CGYQIC~fC~~rI~~~a~k~~~~grCPACRr~Y 60 (810)
+.|-||.|. |+..+-=+||+-+|--|+..-.+ .++..-||.||-+.
T Consensus 370 eLCKICaen----dKdvkIEPCGHLlCt~CLa~WQ~----sd~gq~CPFCRcEI 415 (563)
T KOG1785|consen 370 ELCKICAEN----DKDVKIEPCGHLLCTSCLAAWQD----SDEGQTCPFCRCEI 415 (563)
T ss_pred HHHHHhhcc----CCCcccccccchHHHHHHHhhcc----cCCCCCCCceeeEe
Confidence 468889874 57777778899999999988753 23355699999866
No 213
>TIGR00143 hypF [NiFe] hydrogenase maturation protein HypF. A previously described regulatory effect of HypF mutatation is attributable to loss of activity of a regulatory hydrogenase. A zinc finger-like region CXXCX(18)CXXCX(24)CXXCX(18)CXXC region further supported the regulatory hypothesis. However, more recent work (PUBMED:11375153) shows the direct effect is on the activity of expressed hydrogenases with nickel/iron centers, rather than on expression.
Probab=46.87 E-value=2.9 Score=50.69 Aligned_cols=53 Identities=28% Similarity=0.617 Sum_probs=33.0
Q ss_pred CCCCCCcccCC-CcCCCCc----cccC-CCchhhhhh---HhHhHhhhhhcc--ccCCCCCCCCCCccc
Q 003574 6 EKTCPLCAEEM-DLTDQQL----KPCK-CGYEICVWC---WHHIMDMAEKEE--TEGRCPACRSPYDKE 63 (810)
Q Consensus 6 d~~CPLC~Eel-D~tD~~F----~PC~-CGYQIC~fC---~~rI~~~a~k~~--~~grCPACRr~Yde~ 63 (810)
-.+|+-|..|| |+.|+.| -.|+ ||-+....= |+|- ++. .-..||.|.++|.+.
T Consensus 68 ~a~C~~Cl~E~~dp~~Rry~YpF~nCt~CGPr~~i~~~lpydr~-----~t~m~~f~~C~~C~~ey~~p 131 (711)
T TIGR00143 68 VATCSDCLEEMLDKNDRRYLYPFISCTHCGPRFTIIEALPYDRE-----NTSMADFPLCPDCAKEYKDP 131 (711)
T ss_pred hhhHHHHHHHhcCCCcccccCCcccccCCCCCeEEeecCCCCCC-----CcCCCCCcCCHHHHHHhcCC
Confidence 35899999998 8999886 3477 877721100 1111 111 234599999999643
No 214
>KOG3702 consensus Nuclear polyadenylated RNA binding protein [RNA processing and modification]
Probab=44.75 E-value=22 Score=43.11 Aligned_cols=97 Identities=18% Similarity=0.214 Sum_probs=68.6
Q ss_pred ccccCeEEEeCCCCCCChhHHHHHHHhhccCcceeEEEEeecCCCcccccCCCceEEEEEeCCHHHHHHHHHHhCCCccC
Q 003574 101 VIQRNLVYIVGLPLNLGDEDLLQRREYFGQYGKVLKVSMSRTAAGVIQQFPNNTCSVYITYSKEEEAVRCIQSVHGFVLE 180 (810)
Q Consensus 101 VIQkNLVYV~GLP~~iaEEDLLr~~EyFGQYGkI~KIvInrdk~g~~~q~~~~~gsAYVTFs~~EDA~rAI~aLDG~~LD 180 (810)
+.|+ .||+-+-...-...-+ ..+|-.++.+++..+...-.+. + ....+|+.|.++.-|..| .++.+..+.
T Consensus 509 ~s~p-~i~~~~~~~~s~~~s~---s~~s~~~~~ltk~k~l~~Cky~----~-~Ct~a~Ce~~HPtaa~~~-~s~p~k~fa 578 (681)
T KOG3702|consen 509 ASQP-TIFVANGHGGSNPDSL---SRHSEKKNELTKAKILTRCKYG----P-ACTSAECEFAHPTAAENA-KSLPNKKFA 578 (681)
T ss_pred cCCC-ceecccccccCCCcch---hhCcccccccccceeeccccCC----C-cCCchhhhhcCCcchhhh-hcccccccc
Confidence 4555 6676655544444455 6799999999998887665443 1 234799999999877655 557777777
Q ss_pred CcEEEEeecCCCCcccccCCCCCCCCCCcccccC
Q 003574 181 GKSLKACFGTTKYCHAWLRNVPCTNPDCLYLHEV 214 (810)
Q Consensus 181 GR~LRASfGTTKYCs~FLRg~~C~N~dC~YLHE~ 214 (810)
.+.|+.. +-|.+ +..|.+.||.|-|--
T Consensus 579 ~~~~ks~----p~Ck~---~~kCtasDC~~sH~~ 605 (681)
T KOG3702|consen 579 SKCLKSH----PGCKF---GKKCTASDCNYSHAG 605 (681)
T ss_pred ccceecc----ccccc---ccccccccCcccccC
Confidence 7777754 33543 789999999999953
No 215
>KOG3161 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=44.60 E-value=9.1 Score=46.16 Aligned_cols=48 Identities=21% Similarity=0.562 Sum_probs=34.0
Q ss_pred CCCCCcccCCCcCCCCccccCCCchhhhhhHhHhHhhhhhccccCCCCCCCCCCccccc
Q 003574 7 KTCPLCAEEMDLTDQQLKPCKCGYEICVWCWHHIMDMAEKEETEGRCPACRSPYDKEKI 65 (810)
Q Consensus 7 ~~CPLC~EelD~tD~~F~PC~CGYQIC~fC~~rI~~~a~k~~~~grCPACRr~Yde~~i 65 (810)
..|++|+.+|-..-.-=.--.||.-||.-|...+ .+..|| |.+ |+..+
T Consensus 12 l~c~ic~n~f~~~~~~Pvsl~cghtic~~c~~~l--------yn~scp-~~~--De~~~ 59 (861)
T KOG3161|consen 12 LLCDICLNLFVVQRLEPVSLQCGHTICGHCVQLL--------YNASCP-TKR--DEDSS 59 (861)
T ss_pred hhchHHHHHHHHHhcCcccccccchHHHHHHHhH--------hhccCC-CCc--cccch
Confidence 4799999888543333334569999999999988 477899 644 55443
No 216
>PF02318 FYVE_2: FYVE-type zinc finger; InterPro: IPR003315 This entry represents the zinc-binding domain found in rabphilin Rab3A. The small G protein Rab3A plays an important role in the regulation of neurotransmitter release. The crystal structure of the small G protein Rab3A complexed with the effector domain of rabphilin-3A shows that the effector domain of rabphilin-3A contacts Rab3A in two distinct areas. The first interface involves the Rab3A switch I and switch II regions, which are sensitive to the nucleotide-binding state of Rab3A. The second interface consists of a deep pocket in Rab3A that interacts with a SGAWFF structural element of rabphilin-3A. Sequence and structure analysis, and biochemical data suggest that this pocket, or Rab complementarity-determining region (RabCDR), establishes a specific interaction between each Rab protein and its effectors. It has been suggested that RabCDRs could be major determinants of effector specificity during vesicle trafficking and fusion [].; GO: 0008270 zinc ion binding, 0017137 Rab GTPase binding, 0006886 intracellular protein transport; PDB: 2CSZ_A 2ZET_C 1ZBD_B 3BC1_B 2CJS_C 2A20_A.
Probab=43.81 E-value=11 Score=35.71 Aligned_cols=49 Identities=24% Similarity=0.573 Sum_probs=33.8
Q ss_pred cCCCCCCcccCCCcCCCCccccC-CCchhhhhhHhHhHhhhhhccccCCCCCCCC
Q 003574 5 GEKTCPLCAEEMDLTDQQLKPCK-CGYEICVWCWHHIMDMAEKEETEGRCPACRS 58 (810)
Q Consensus 5 ~d~~CPLC~EelD~tD~~F~PC~-CGYQIC~fC~~rI~~~a~k~~~~grCPACRr 58 (810)
++..|.+|..+|.+-+..-..|. |++.||.-|-... +....-+|-.|++
T Consensus 53 ~~~~C~~C~~~fg~l~~~~~~C~~C~~~VC~~C~~~~-----~~~~~WlC~vC~k 102 (118)
T PF02318_consen 53 GERHCARCGKPFGFLFNRGRVCVDCKHRVCKKCGVYS-----KKEPIWLCKVCQK 102 (118)
T ss_dssp CCSB-TTTS-BCSCTSTTCEEETTTTEEEETTSEEET-----SSSCCEEEHHHHH
T ss_pred CCcchhhhCCcccccCCCCCcCCcCCccccCccCCcC-----CCCCCEEChhhHH
Confidence 56799999999987776668887 9999998887663 1223445776643
No 217
>KOG0804 consensus Cytoplasmic Zn-finger protein BRAP2 (BRCA1 associated protein) [General function prediction only]
Probab=43.69 E-value=63 Score=37.98 Aligned_cols=67 Identities=16% Similarity=0.374 Sum_probs=55.4
Q ss_pred cCeEEEeCCCCCCChhHHHHHHHhhccCc-ceeEEEEeecCCCcccccCCCceEEEEEeCCHHHHHHHHHHhCCCccC
Q 003574 104 RNLVYIVGLPLNLGDEDLLQRREYFGQYG-KVLKVSMSRTAAGVIQQFPNNTCSVYITYSKEEEAVRCIQSVHGFVLE 180 (810)
Q Consensus 104 kNLVYV~GLP~~iaEEDLLr~~EyFGQYG-kI~KIvInrdk~g~~~q~~~~~gsAYVTFs~~EDA~rAI~aLDG~~LD 180 (810)
.++|.|.++|..++--|||+ |.+.+= .|..|.|.|+... .++.+-|.|.+.++|..=-..+||..+.
T Consensus 74 ~~mLcilaVP~~mt~~Dll~---F~~~~~~~I~~irivRd~~p-------nrymvLIkFr~q~da~~Fy~efNGk~Fn 141 (493)
T KOG0804|consen 74 STMLCILAVPAYMTSHDLLR---FCASFIKQISDIRIVRDGMP-------NRYMVLIKFRDQADADTFYEEFNGKQFN 141 (493)
T ss_pred CcEEEEEeccccccHHHHHH---HHHHHhhhhheeEEeecCCC-------ceEEEEEEeccchhHHHHHHHcCCCcCC
Confidence 78899999999999999974 444432 5788999996543 3689999999999999999999998863
No 218
>KOG0825 consensus PHD Zn-finger protein [General function prediction only]
Probab=43.67 E-value=6.4 Score=48.26 Aligned_cols=55 Identities=16% Similarity=0.325 Sum_probs=0.0
Q ss_pred CCcccCCCCCCcccCCCcCCCCccccCCCchhhhhhHhHhHhhhhhccccCCCCCCCCCCcc
Q 003574 1 MSDEGEKTCPLCAEEMDLTDQQLKPCKCGYEICVWCWHHIMDMAEKEETEGRCPACRSPYDK 62 (810)
Q Consensus 1 msDd~d~~CPLC~EelD~tD~~F~PC~CGYQIC~fC~~rI~~~a~k~~~~grCPACRr~Yde 62 (810)
.+.++...||.|+--+ ..-...-+-+|++-+|--|+.-+-. ...-||-||..|++
T Consensus 118 ~~~~~~~~CP~Ci~s~-~DqL~~~~k~c~H~FC~~Ci~sWsR------~aqTCPiDR~EF~~ 172 (1134)
T KOG0825|consen 118 VQTHVENQCPNCLKSC-NDQLEESEKHTAHYFCEECVGSWSR------CAQTCPVDRGEFGE 172 (1134)
T ss_pred hhhhhhhhhhHHHHHH-HHHhhccccccccccHHHHhhhhhh------hcccCchhhhhhhe
No 219
>PHA02862 5L protein; Provisional
Probab=43.42 E-value=19 Score=36.51 Aligned_cols=45 Identities=20% Similarity=0.614 Sum_probs=31.2
Q ss_pred CCCCCcccCCCcCCCCccccCCC------chhhhhhHhHhHhhhhhccccCCCCCCCCCCc
Q 003574 7 KTCPLCAEEMDLTDQQLKPCKCG------YEICVWCWHHIMDMAEKEETEGRCPACRSPYD 61 (810)
Q Consensus 7 ~~CPLC~EelD~tD~~F~PC~CG------YQIC~fC~~rI~~~a~k~~~~grCPACRr~Yd 61 (810)
..|-+|-++=+ ....||.|. +|-| +.+=++ ....-.||-|+.+|.
T Consensus 3 diCWIC~~~~~---e~~~PC~C~GS~K~VHq~C---L~~WIn----~S~k~~CeLCkteY~ 53 (156)
T PHA02862 3 DICWICNDVCD---ERNNFCGCNEEYKVVHIKC---MQLWIN----YSKKKECNLCKTKYN 53 (156)
T ss_pred CEEEEecCcCC---CCcccccccCcchhHHHHH---HHHHHh----cCCCcCccCCCCeEE
Confidence 57999999854 236999992 3545 333332 345778999999995
No 220
>KOG4692 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=43.02 E-value=17 Score=41.28 Aligned_cols=49 Identities=22% Similarity=0.592 Sum_probs=33.4
Q ss_pred CcccCCCCCCcccCCCcCCCCccccCCCchhhhhhHhHhHhhhhhccccCCCCCCCCCC
Q 003574 2 SDEGEKTCPLCAEEMDLTDQQLKPCKCGYEICVWCWHHIMDMAEKEETEGRCPACRSPY 60 (810)
Q Consensus 2 sDd~d~~CPLC~EelD~tD~~F~PC~CGYQIC~fC~~rI~~~a~k~~~~grCPACRr~Y 60 (810)
-|-+|..||||+-.- ..--|- ||++|-|--|..+=+ | ...+|=-|....
T Consensus 418 p~sEd~lCpICyA~p--i~Avf~--PC~H~SC~~CI~qHl-m-----N~k~CFfCktTv 466 (489)
T KOG4692|consen 418 PDSEDNLCPICYAGP--INAVFA--PCSHRSCYGCITQHL-M-----NCKRCFFCKTTV 466 (489)
T ss_pred CCcccccCcceeccc--chhhcc--CCCCchHHHHHHHHH-h-----cCCeeeEeccee
Confidence 356789999999653 223444 568999999988433 1 256788887644
No 221
>KOG4159 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=40.24 E-value=18 Score=41.56 Aligned_cols=48 Identities=27% Similarity=0.708 Sum_probs=35.8
Q ss_pred cCCCCCCcccCCCcCCCCccccCCCchhhhhhHhHhHhhhhhccccCCCCCCCCCCcc
Q 003574 5 GEKTCPLCAEEMDLTDQQLKPCKCGYEICVWCWHHIMDMAEKEETEGRCPACRSPYDK 62 (810)
Q Consensus 5 ~d~~CPLC~EelD~tD~~F~PC~CGYQIC~fC~~rI~~~a~k~~~~grCPACRr~Yde 62 (810)
.+-.|-+|+.-|= ..-.. +||+-.|++|.++-++ ...-||-||-+|-+
T Consensus 83 sef~c~vc~~~l~---~pv~t-pcghs~c~~Cl~r~ld------~~~~cp~Cr~~l~e 130 (398)
T KOG4159|consen 83 SEFECCVCSRALY---PPVVT-PCGHSFCLECLDRSLD------QETECPLCRDELVE 130 (398)
T ss_pred chhhhhhhHhhcC---CCccc-cccccccHHHHHHHhc------cCCCCccccccccc
Confidence 3457888866552 22233 8999999999998654 46789999999976
No 222
>KOG3039 consensus Uncharacterized conserved protein [Function unknown]
Probab=40.19 E-value=20 Score=39.16 Aligned_cols=52 Identities=19% Similarity=0.524 Sum_probs=44.5
Q ss_pred CCCCCcccCCCcCCCCcccc----CCCchhhhhhHhHhHhhhhhccccCCCCCCCCCCcccccccc
Q 003574 7 KTCPLCAEEMDLTDQQLKPC----KCGYEICVWCWHHIMDMAEKEETEGRCPACRSPYDKEKIVGM 68 (810)
Q Consensus 7 ~~CPLC~EelD~tD~~F~PC----~CGYQIC~fC~~rI~~~a~k~~~~grCPACRr~Yde~~i~~~ 68 (810)
-.||.|-..|. |-.|| +||.-+|.-|-.+++. .++.||-|-+|..+..|+.+
T Consensus 222 yiCpvtrd~Lt----Nt~~ca~Lr~sg~Vv~~ecvEklir------~D~v~pv~d~plkdrdiI~L 277 (303)
T KOG3039|consen 222 YICPVTRDTLT----NTTPCAVLRPSGHVVTKECVEKLIR------KDMVDPVTDKPLKDRDIIGL 277 (303)
T ss_pred eecccchhhhc----CccceEEeccCCcEeeHHHHHHhcc------ccccccCCCCcCcccceEee
Confidence 47999999995 55666 6999999999999984 57899999999999988754
No 223
>PF06827 zf-FPG_IleRS: Zinc finger found in FPG and IleRS; InterPro: IPR010663 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule. Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. This entry represents a zinc finger domain found at the C-terminal in both DNA glycosylase/AP lyase enzymes and in isoleucyl tRNA synthetase. In these two types of enzymes, the C-terminal domain forms a zinc finger. Some related proteins may not bind zinc. DNA glycosylase/AP lyase enzymes are involved in base excision repair of DNA damaged by oxidation or by mutagenic agents. These enzymes have both DNA glycosylase activity (3.2.2 from EC) and AP lyase activity (4.2.99.18 from EC) []. Examples include formamidopyrimidine-DNA glycosylases (Fpg; MutM) and endonuclease VIII (Nei). Formamidopyrimidine-DNA glycosylases (Fpg, MutM) is a trifunctional DNA base excision repair enzyme that removes a wide range of oxidation-damaged bases (N-glycosylase activity; 3.2.2.23 from EC) and cleaves both the 3'- and 5'-phosphodiester bonds of the resulting apurinic/apyrimidinic site (AP lyase activity; 4.2.99.18 from EC). Fpg has a preference for oxidised purines, excising oxidized purine bases such as 7,8-dihydro-8-oxoguanine (8-oxoG). ITs AP (apurinic/apyrimidinic) lyase activity introduces nicks in the DNA strand, cleaving the DNA backbone by beta-delta elimination to generate a single-strand break at the site of the removed base with both 3'- and 5'-phosphates. Fpg is a monomer composed of 2 domains connected by a flexible hinge []. The two DNA-binding motifs (a zinc finger and the helix-two-turns-helix motifs) suggest that the oxidized base is flipped out from double-stranded DNA in the binding mode and excised by a catalytic mechanism similar to that of bifunctional base excision repair enzymes []. Fpg binds one ion of zinc at the C terminus, which contains four conserved and essential cysteines []. Endonuclease VIII (Nei) has the same enzyme activities as Fpg above, but with a preference for oxidized pyrimidines, such as thymine glycol, 5,6-dihydrouracil and 5,6-dihydrothymine [, ]. An Fpg-type zinc finger is also found at the C terminus of isoleucyl tRNA synthetase (6.1.1.5 from EC) [, ]. This enzyme catalyses the attachment of isoleucine to tRNA(Ile). As IleRS can inadvertently accommodate and process structurally similar amino acids such as valine, to avoid such errors it has two additional distinct tRNA(Ile)-dependent editing activities. One activity is designated as 'pre-transfer' editing and involves the hydrolysis of activated Val-AMP. The other activity is designated 'post-transfer' editing and involves deacylation of mischarged Val-tRNA(Ile) []. More information about these proteins can be found at Protein of the Month: Zinc Fingers [].; GO: 0003824 catalytic activity; PDB: 1K82_C 1Q39_A 2OQ4_B 2OPF_A 1K3X_A 1K3W_A 1Q3B_A 2EA0_A 1Q3C_A 2XZF_A ....
Probab=39.97 E-value=3.8 Score=30.12 Aligned_cols=28 Identities=32% Similarity=0.815 Sum_probs=14.9
Q ss_pred hhhhhhHhHhHhhhhhccccCCCCCCCC
Q 003574 31 EICVWCWHHIMDMAEKEETEGRCPACRS 58 (810)
Q Consensus 31 QIC~fC~~rI~~~a~k~~~~grCPACRr 58 (810)
+-|.-||+.|.++.........||.|-.
T Consensus 2 ~~C~rC~~~~~~~~~~~r~~~~C~rCq~ 29 (30)
T PF06827_consen 2 EKCPRCWNYIEDIGINGRSTYLCPRCQK 29 (30)
T ss_dssp SB-TTT--BBEEEEETTEEEEE-TTTCC
T ss_pred CcCccCCCcceEeEecCCCCeECcCCcC
Confidence 4588899998754332334567999953
No 224
>PF12906 RINGv: RING-variant domain; PDB: 2D8S_A 1VYX_A.
Probab=39.86 E-value=19 Score=29.40 Aligned_cols=41 Identities=27% Similarity=0.850 Sum_probs=22.3
Q ss_pred CCCcccCCCcCCCCccccCC-C-----chhhhhhHhHhHhhhhhccccCCCCCC
Q 003574 9 CPLCAEEMDLTDQQLKPCKC-G-----YEICVWCWHHIMDMAEKEETEGRCPAC 56 (810)
Q Consensus 9 CPLC~EelD~tD~~F~PC~C-G-----YQIC~fC~~rI~~~a~k~~~~grCPAC 56 (810)
|-||.+.-+..+....||.| | ++-|+.=|-.. ..+..|+.|
T Consensus 1 CrIC~~~~~~~~~li~pC~C~Gs~~~vH~~CL~~W~~~-------~~~~~C~~C 47 (47)
T PF12906_consen 1 CRICLEGEEEDEPLISPCRCKGSMKYVHRSCLERWIRE-------SGNRKCEIC 47 (47)
T ss_dssp ETTTTEE-SSSS-EE-SSS-SSCCGSEECCHHHHHHHH-------HT-SB-TTT
T ss_pred CeEeCCcCCCCCceecccccCCCcchhHHHHHHHHHHh-------cCCCcCCCC
Confidence 67898888777778899999 4 24454444332 235568776
No 225
>PF12773 DZR: Double zinc ribbon
Probab=39.05 E-value=26 Score=28.07 Aligned_cols=29 Identities=17% Similarity=0.542 Sum_probs=15.7
Q ss_pred hhhhhhHhHhHhhhhhccccCCCCCCCCCCcc
Q 003574 31 EICVWCWHHIMDMAEKEETEGRCPACRSPYDK 62 (810)
Q Consensus 31 QIC~fC~~rI~~~a~k~~~~grCPACRr~Yde 62 (810)
++|.+|=..+.. .......||.|.++++.
T Consensus 13 ~fC~~CG~~l~~---~~~~~~~C~~Cg~~~~~ 41 (50)
T PF12773_consen 13 KFCPHCGTPLPP---PDQSKKICPNCGAENPP 41 (50)
T ss_pred cCChhhcCChhh---ccCCCCCCcCCcCCCcC
Confidence 345555555531 12335668888776554
No 226
>PF14447 Prok-RING_4: Prokaryotic RING finger family 4
Probab=38.89 E-value=16 Score=31.58 Aligned_cols=33 Identities=27% Similarity=0.666 Sum_probs=25.5
Q ss_pred ccCCCchhhhhhHhHhHhhhhhccccCCCCCCCCCCccccc
Q 003574 25 PCKCGYEICVWCWHHIMDMAEKEETEGRCPACRSPYDKEKI 65 (810)
Q Consensus 25 PC~CGYQIC~fC~~rI~~~a~k~~~~grCPACRr~Yde~~i 65 (810)
--+||.-||.-||.--+ .+ -||-|-++++...+
T Consensus 22 ~~pCgH~I~~~~f~~~r-------Yn-gCPfC~~~~~~~~~ 54 (55)
T PF14447_consen 22 VLPCGHLICDNCFPGER-------YN-GCPFCGTPFEFDDP 54 (55)
T ss_pred cccccceeeccccChhh-------cc-CCCCCCCcccCCCC
Confidence 34789999999998543 33 49999999986654
No 227
>KOG0826 consensus Predicted E3 ubiquitin ligase involved in peroxisome organization [Posttranslational modification, protein turnover, chaperones]
Probab=38.80 E-value=15 Score=41.24 Aligned_cols=42 Identities=26% Similarity=0.665 Sum_probs=30.2
Q ss_pred cCCCCCCcccCCCcCCCCccccCC---CchhhhhhHhHhHhhhhhccccCCCCCCCC
Q 003574 5 GEKTCPLCAEEMDLTDQQLKPCKC---GYEICVWCWHHIMDMAEKEETEGRCPACRS 58 (810)
Q Consensus 5 ~d~~CPLC~EelD~tD~~F~PC~C---GYQIC~fC~~rI~~~a~k~~~~grCPACRr 58 (810)
+...||+|.-.- --||.| ||-.|--|..+-+. ..|+||---.
T Consensus 299 ~~~~CpvClk~r------~Nptvl~vSGyVfCY~Ci~~Yv~------~~~~CPVT~~ 343 (357)
T KOG0826|consen 299 DREVCPVCLKKR------QNPTVLEVSGYVFCYPCIFSYVV------NYGHCPVTGY 343 (357)
T ss_pred ccccChhHHhcc------CCCceEEecceEEeHHHHHHHHH------hcCCCCccCC
Confidence 347899997644 467877 99988888776552 4799995433
No 228
>KOG4628 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=38.74 E-value=22 Score=40.19 Aligned_cols=47 Identities=23% Similarity=0.577 Sum_probs=31.7
Q ss_pred CCCCcccCCCcCCCCccccCCCchhhhhhHhHhHhhhhhccccCC-CCCCCCCCc
Q 003574 8 TCPLCAEEMDLTDQQLKPCKCGYEICVWCWHHIMDMAEKEETEGR-CPACRSPYD 61 (810)
Q Consensus 8 ~CPLC~EelD~tD~~F~PC~CGYQIC~fC~~rI~~~a~k~~~~gr-CPACRr~Yd 61 (810)
+|.||+|++..-|+.= --||++..=.-|.+.=+. ...+ ||-|++...
T Consensus 231 ~CaIClEdY~~GdklR-iLPC~H~FH~~CIDpWL~------~~r~~CPvCK~di~ 278 (348)
T KOG4628|consen 231 TCAICLEDYEKGDKLR-ILPCSHKFHVNCIDPWLT------QTRTFCPVCKRDIR 278 (348)
T ss_pred eEEEeecccccCCeee-EecCCCchhhccchhhHh------hcCccCCCCCCcCC
Confidence 8999999997777643 255555444667776542 2334 999999553
No 229
>KOG1729 consensus FYVE finger containing protein [General function prediction only]
Probab=38.69 E-value=6.9 Score=42.98 Aligned_cols=60 Identities=22% Similarity=0.570 Sum_probs=43.6
Q ss_pred CcccCCCCCCccc-CCCcCCCCccccC-CCchhhhhhHhHhHhhhhh-ccccCCCCCCCCCCcc
Q 003574 2 SDEGEKTCPLCAE-EMDLTDQQLKPCK-CGYEICVWCWHHIMDMAEK-EETEGRCPACRSPYDK 62 (810)
Q Consensus 2 sDd~d~~CPLC~E-elD~tD~~F~PC~-CGYQIC~fC~~rI~~~a~k-~~~~grCPACRr~Yde 62 (810)
-|.+...|+.|.- +|.+.++..- |. ||..+|..|-+++..+..- +....-|+.|-..|.+
T Consensus 164 PD~ea~~C~~C~~~~Ftl~~RRHH-CR~CG~ivC~~Cs~n~~~l~~~~~k~~rvC~~CF~el~~ 226 (288)
T KOG1729|consen 164 PDSEATECMVCGCTEFTLSERRHH-CRNCGDIVCAPCSRNRFLLPNLSTKPIRVCDICFEELEK 226 (288)
T ss_pred CcccceecccCCCccccHHHHHHH-HHhcchHhhhhhhcCcccccccCCCCceecHHHHHHHhc
Confidence 3677889999999 9999998877 87 9999999999985433211 1122258999655543
No 230
>PF00642 zf-CCCH: Zinc finger C-x8-C-x5-C-x3-H type (and similar); InterPro: IPR000571 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule. Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. This entry represents C-x8-C-x5-C-x3-H (CCCH) type Zinc finger (Znf) domains. Proteins containing CCCH Znf domains include Znf proteins from eukaryotes involved in cell cycle or growth phase-related regulation, e.g. human TIS11B (butyrate response factor 1), a probable regulatory protein involved in regulating the response to growth factors, and the mouse TTP growth factor-inducible nuclear protein, which has the same function. The mouse TTP protein is induced by growth factors. Another protein containing this domain is the human splicing factor U2AF 35kDa subunit, which plays a critical role in both constitutive and enhancer-dependent splicing by mediating essential protein-protein interactions and protein-RNA interactions required for 3' splice site selection. It has been shown that different CCCH-type Znf proteins interact with the 3'-untranslated region of various mRNA [, ]. This type of Znf is very often present in two copies. More information about these proteins can be found at Protein of the Month: Zinc Fingers [].; GO: 0003676 nucleic acid binding, 0008270 zinc ion binding; PDB: 1M9O_A 1RGO_A 2CQE_A 2FC6_A 2D9M_A 2E5S_A 2RHK_C 2D9N_A 3D2S_A 3D2Q_C ....
Probab=38.37 E-value=11 Score=27.43 Aligned_cols=23 Identities=30% Similarity=0.733 Sum_probs=17.7
Q ss_pred CCCcccccCCCCCCC-CCCccccc
Q 003574 191 TKYCHAWLRNVPCTN-PDCLYLHE 213 (810)
Q Consensus 191 TKYCs~FLRg~~C~N-~dC~YLHE 213 (810)
++-|..|++.-.|.. ..|.|+|.
T Consensus 3 ~~~C~~f~~~g~C~~G~~C~f~H~ 26 (27)
T PF00642_consen 3 TKLCRFFMRTGTCPFGDKCRFAHG 26 (27)
T ss_dssp SSB-HHHHHTS--TTGGGSSSBSS
T ss_pred cccChhhccCCccCCCCCcCccCC
Confidence 678999999889998 69999996
No 231
>PF01485 IBR: IBR domain; InterPro: IPR002867 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule. Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. This entry represents a cysteine-rich (C6HC) zinc finger domain that is present in Triad1, and which is conserved in other proteins encoded by various eukaryotes. The C6HC consensus pattern is: C-x(4)-C-x(14-30)-C-x(1-4)-C-x(4)-C-x(2)-C-x(4)-H-x(4)-C The C6HC zinc finger motif is the fourth family member of the zinc-binding RING, LIM, and LAP/PHD fingers. Strikingly, in most of the proteins the C6HC domain is flanked by two RING finger structures IPR001841 from INTERPRO. The novel C6HC motif has been called DRIL (double RING finger linked). The strong conservation of the larger tripartite TRIAD (twoRING fingers and DRIL) structure indicates that the three subdomains are functionally linked and identifies a novel class of proteins []. More information about these proteins can be found at Protein of the Month: Zinc Fingers [].; GO: 0008270 zinc ion binding; PDB: 2CT7_A 1WD2_A 2JMO_A 1WIM_A.
Probab=37.00 E-value=16 Score=29.62 Aligned_cols=34 Identities=29% Similarity=0.653 Sum_probs=19.0
Q ss_pred cCCCCCC--cccCCCcCCCCc---cccC-CCchhhhhhHh
Q 003574 5 GEKTCPL--CAEEMDLTDQQL---KPCK-CGYEICVWCWH 38 (810)
Q Consensus 5 ~d~~CPL--C~EelD~tD~~F---~PC~-CGYQIC~fC~~ 38 (810)
+-..||- |-..+-..+..- .-|+ |++++|.-|-.
T Consensus 17 ~~~~Cp~~~C~~~~~~~~~~~~~~~~C~~C~~~fC~~C~~ 56 (64)
T PF01485_consen 17 NIRWCPNPDCEYIIEKDDGCNSPIVTCPSCGTEFCFKCGE 56 (64)
T ss_dssp -CC--TTSST---ECS-SSTTS--CCTTSCCSEECSSSTS
T ss_pred CccCCCCCCCcccEEecCCCCCCeeECCCCCCcCccccCc
Confidence 3357877 888876665554 4699 99998877743
No 232
>COG1198 PriA Primosomal protein N' (replication factor Y) - superfamily II helicase [DNA replication, recombination, and repair]
Probab=33.89 E-value=24 Score=43.32 Aligned_cols=67 Identities=24% Similarity=0.532 Sum_probs=42.7
Q ss_pred CCCCCcccCCCcCCCCccccCCCchhhhhhHhHhHhhhhhccccCCCCCCCCCCccccccccccChhHHHHHHHhhhccC
Q 003574 7 KTCPLCAEEMDLTDQQLKPCKCGYEICVWCWHHIMDMAEKEETEGRCPACRSPYDKEKIVGMAAKCESMERKMKSQKSKT 86 (810)
Q Consensus 7 ~~CPLC~EelD~tD~~F~PC~CGYQIC~fC~~rI~~~a~k~~~~grCPACRr~Yde~~i~~~~~~~e~~~kkqK~qk~K~ 86 (810)
..||-|--.|..-... +.-.|.||-++.. .-..||.|-.. .+++..+-.|+.++.
T Consensus 445 ~~Cp~Cd~~lt~H~~~------~~L~CH~Cg~~~~-------~p~~Cp~Cgs~----~L~~~G~Gterieee-------- 499 (730)
T COG1198 445 AECPNCDSPLTLHKAT------GQLRCHYCGYQEP-------IPQSCPECGSE----HLRAVGPGTERIEEE-------- 499 (730)
T ss_pred ccCCCCCcceEEecCC------CeeEeCCCCCCCC-------CCCCCCCCCCC----eeEEecccHHHHHHH--------
Confidence 4688888877543333 5566778877642 35689999664 466666666765533
Q ss_pred CCchhhhhccccccccc
Q 003574 87 KSSEGKKQQLSSVRVIQ 103 (810)
Q Consensus 87 k~~e~RK~~LanvRVIQ 103 (810)
-++ .|.+.||+.
T Consensus 500 ----L~~-~FP~~rv~r 511 (730)
T COG1198 500 ----LKR-LFPGARIIR 511 (730)
T ss_pred ----HHH-HCCCCcEEE
Confidence 334 666666554
No 233
>TIGR00416 sms DNA repair protein RadA. The gene protuct codes for a probable ATP-dependent protease involved in both DNA repair and degradation of proteins, peptides, glycopeptides. Also known as sms. Residues 11-28 of the SEED alignment contain a putative Zn binding domain. Residues 110-117 of the seed contain a putative ATP binding site both documented in Haemophilus and in Listeria monocytogenes. for E.coli see ( J. BACTERIOL. 178:5045-5048(1996)).
Probab=32.25 E-value=20 Score=41.25 Aligned_cols=24 Identities=33% Similarity=0.933 Sum_probs=16.6
Q ss_pred CCccccC-CCchhhhhhHhHhHhhhhhccccCCCCCCCC
Q 003574 21 QQLKPCK-CGYEICVWCWHHIMDMAEKEETEGRCPACRS 58 (810)
Q Consensus 21 ~~F~PC~-CGYQIC~fC~~rI~~~a~k~~~~grCPACRr 58 (810)
+..|-|. |||+- ..-.|+||+|+.
T Consensus 5 ~~~y~C~~Cg~~~--------------~~~~g~Cp~C~~ 29 (454)
T TIGR00416 5 KSKFVCQHCGADS--------------PKWQGKCPACHA 29 (454)
T ss_pred CCeEECCcCCCCC--------------ccccEECcCCCC
Confidence 4456687 88871 234789999965
No 234
>PF11781 RRN7: RNA polymerase I-specific transcription initiation factor Rrn7; InterPro: IPR021752 Rrn7 is a transcription binding factor that associates strongly with both Rrn6 and Rrn11 to form a complex which itself binds the TATA-binding protein and is required for transcription by the core domain of the RNA PolI promoter [],[].
Probab=32.12 E-value=22 Score=27.87 Aligned_cols=25 Identities=28% Similarity=0.813 Sum_probs=22.4
Q ss_pred CCCCcccCCCcCCCCcccc-CCCchh
Q 003574 8 TCPLCAEEMDLTDQQLKPC-KCGYEI 32 (810)
Q Consensus 8 ~CPLC~EelD~tD~~F~PC-~CGYQI 32 (810)
.|+.|-+.+-..|--|+-| .||.|+
T Consensus 10 ~C~~C~~~~~~~~dG~~yC~~cG~~~ 35 (36)
T PF11781_consen 10 PCPVCGSRWFYSDDGFYYCDRCGHQS 35 (36)
T ss_pred cCCCCCCeEeEccCCEEEhhhCceEc
Confidence 4999999999999999999 899873
No 235
>KOG1039 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=30.90 E-value=39 Score=38.25 Aligned_cols=55 Identities=25% Similarity=0.637 Sum_probs=37.4
Q ss_pred ccCCCCCCcccCCCcCCCC-----ccccC-CCchhhhhhHhHhHhh-hhhccccCCCCCCCCCC
Q 003574 4 EGEKTCPLCAEEMDLTDQQ-----LKPCK-CGYEICVWCWHHIMDM-AEKEETEGRCPACRSPY 60 (810)
Q Consensus 4 d~d~~CPLC~EelD~tD~~-----F~PC~-CGYQIC~fC~~rI~~~-a~k~~~~grCPACRr~Y 60 (810)
..+.+|-||||..- ++. |.--+ |-+-.|+-|+..=+.- ..-..+...||-||.+-
T Consensus 159 s~~k~CGICme~i~--ek~~~~~rfgilpnC~H~~Cl~Cir~wr~~~q~~~~~sksCP~CRv~s 220 (344)
T KOG1039|consen 159 SSEKECGICMETIN--EKAASERRFGILPNCNHSFCLNCIRKWRQATQFESKTSKSCPFCRVPS 220 (344)
T ss_pred cccccceehhhhcc--ccchhhhhcccCCCcchhhhhcHhHhhhhhhccccccccCCCcccCcc
Confidence 34789999999863 444 75555 8899888887766520 00123457899999854
No 236
>KOG4213 consensus RNA-binding protein La [RNA processing and modification]
Probab=30.15 E-value=50 Score=34.76 Aligned_cols=62 Identities=24% Similarity=0.298 Sum_probs=40.0
Q ss_pred ccccCeEEEeCCCCCCChhHHHHH-HHhhccCcceeEEEEeecCCCcccccCCCceEEEEEeCCHHHHHHHHHHh
Q 003574 101 VIQRNLVYIVGLPLNLGDEDLLQR-REYFGQYGKVLKVSMSRTAAGVIQQFPNNTCSVYITYSKEEEAVRCIQSV 174 (810)
Q Consensus 101 VIQkNLVYV~GLP~~iaEEDLLr~-~EyFGQYGkI~KIvInrdk~g~~~q~~~~~gsAYVTFs~~EDA~rAI~aL 174 (810)
-++...||.- ++++.| .. .++-+ |++..|.+-+..... ..-+|++||||.+.+.|..+++.-
T Consensus 108 ~~~~r~v~~K-----~td~ql-~~l~qw~~--~k~~nv~mr~~~~k~----~~fkGsvkv~f~tk~qa~a~~~~~ 170 (205)
T KOG4213|consen 108 GIKERTVYKK-----ITDDQL-DDLNQWAS--GKGHNVKMRRHGNKA----HPFKGSVKVTFQTKEQAFANDDTH 170 (205)
T ss_pred HHHHhhhhcc-----CCHHHH-HHHHHHhc--ccceEeeccccCCCC----CCCCCceEEEeecHHHHHhhhhhh
Confidence 4556667765 333332 11 34444 899988886543332 123678999999999999998753
No 237
>KOG0828 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=29.88 E-value=40 Score=39.96 Aligned_cols=14 Identities=29% Similarity=0.819 Sum_probs=11.3
Q ss_pred CCCCCCcccCCCcC
Q 003574 6 EKTCPLCAEEMDLT 19 (810)
Q Consensus 6 d~~CPLC~EelD~t 19 (810)
..+|+|||-++|+.
T Consensus 571 t~dC~ICMt~I~l~ 584 (636)
T KOG0828|consen 571 TNDCVICMTPIDLR 584 (636)
T ss_pred cccceEecccccee
Confidence 36899999998753
No 238
>PRK11595 DNA utilization protein GntX; Provisional
Probab=29.67 E-value=42 Score=34.97 Aligned_cols=40 Identities=28% Similarity=0.639 Sum_probs=27.1
Q ss_pred CCCCCcccCCCcCCCCccccCCCchhhhhhHhHhHhhhhhccccCCCCCCCCCCc
Q 003574 7 KTCPLCAEEMDLTDQQLKPCKCGYEICVWCWHHIMDMAEKEETEGRCPACRSPYD 61 (810)
Q Consensus 7 ~~CPLC~EelD~tD~~F~PC~CGYQIC~fC~~rI~~~a~k~~~~grCPACRr~Yd 61 (810)
..|.+|-+.+... ...||..|+..|.- ...+||.|-++..
T Consensus 6 ~~C~~C~~~~~~~---------~~~lC~~C~~~l~~------~~~~C~~Cg~~~~ 45 (227)
T PRK11595 6 GLCWLCRMPLALS---------HWGICSVCSRALRT------LKTCCPQCGLPAT 45 (227)
T ss_pred CcCccCCCccCCC---------CCcccHHHHhhCCc------ccCcCccCCCcCC
Confidence 3699998877422 12489999988742 2357888887754
No 239
>PF03880 DbpA: DbpA RNA binding domain ; InterPro: IPR005580 This RNA binding domain is found at the C terminus of a number of DEAD helicase proteins [].; PDB: 2G0C_A 3MOJ_B.
Probab=28.94 E-value=1.1e+02 Score=26.74 Aligned_cols=59 Identities=12% Similarity=0.236 Sum_probs=31.5
Q ss_pred CCCChhHHHHHHHhhccCccee-----EEEEeecCCCcccccCCCceEEEEEeCCHHHHHHHHHHhCCCccCCcEEEEee
Q 003574 114 LNLGDEDLLQRREYFGQYGKVL-----KVSMSRTAAGVIQQFPNNTCSVYITYSKEEEAVRCIQSVHGFVLEGKSLKACF 188 (810)
Q Consensus 114 ~~iaEEDLLr~~EyFGQYGkI~-----KIvInrdk~g~~~q~~~~~gsAYVTFs~~EDA~rAI~aLDG~~LDGR~LRASf 188 (810)
..+...+|| .++..-+.|. +|.|.. . +.||.-.. +.|.+++.+|++..+.||.|++..
T Consensus 11 dg~~~~~iv---~~i~~~~gi~~~~IG~I~I~~------------~-~S~vev~~-~~a~~v~~~l~~~~~~gk~v~ve~ 73 (74)
T PF03880_consen 11 DGLTPRDIV---GAICNEAGIPGRDIGRIDIFD------------N-FSFVEVPE-EVAEKVLEALNGKKIKGKKVRVER 73 (74)
T ss_dssp GT--HHHHH---HHHHTCTTB-GGGEEEEEE-S------------S--EEEEE-T-T-HHHHHHHHTT--SSS----EEE
T ss_pred cCCCHHHHH---HHHHhccCCCHHhEEEEEEee------------e-EEEEEECH-HHHHHHHHHhcCCCCCCeeEEEEE
Confidence 456666774 5666665444 555542 2 45777665 579999999999999999999875
Q ss_pred c
Q 003574 189 G 189 (810)
Q Consensus 189 G 189 (810)
|
T Consensus 74 A 74 (74)
T PF03880_consen 74 A 74 (74)
T ss_dssp -
T ss_pred C
Confidence 4
No 240
>KOG1493 consensus Anaphase-promoting complex (APC), subunit 11 [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=28.79 E-value=52 Score=30.45 Aligned_cols=54 Identities=26% Similarity=0.741 Sum_probs=28.4
Q ss_pred CCCCCCcccCCCcCCCC--c--cccCCCchhhhhhHhH--hHh-hhhhccccCCCCCCCCCC
Q 003574 6 EKTCPLCAEEMDLTDQQ--L--KPCKCGYEICVWCWHH--IMD-MAEKEETEGRCPACRSPY 60 (810)
Q Consensus 6 d~~CPLC~EelD~tD~~--F--~PC~CGYQIC~fC~~r--I~~-~a~k~~~~grCPACRr~Y 60 (810)
+++|-||--+||-.=.. | --||==.-+|+-++|. |.+ .+. ...++.||-||+.+
T Consensus 20 ~e~CGiCRm~Fdg~Cp~Ck~PgDdCPLv~G~C~h~fh~hCI~~wl~~-~tsq~~CPmcRq~~ 80 (84)
T KOG1493|consen 20 DETCGICRMPFDGCCPDCKLPGDDCPLVWGYCLHAFHAHCILKWLNT-PTSQGQCPMCRQTW 80 (84)
T ss_pred CCccceEecccCCcCCCCcCCCCCCccHHHHHHHHHHHHHHHHHhcC-ccccccCCcchhee
Confidence 34666666666532110 0 0133223467777773 332 222 34569999999965
No 241
>PRK04023 DNA polymerase II large subunit; Validated
Probab=28.26 E-value=36 Score=43.33 Aligned_cols=46 Identities=28% Similarity=0.718 Sum_probs=32.7
Q ss_pred cCCCCCCcccCCCcCCCCccccC-CCc-----hhhhhhHhHhHhhhhhccccCCCCCCCCCCccc
Q 003574 5 GEKTCPLCAEEMDLTDQQLKPCK-CGY-----EICVWCWHHIMDMAEKEETEGRCPACRSPYDKE 63 (810)
Q Consensus 5 ~d~~CPLC~EelD~tD~~F~PC~-CGY-----QIC~fC~~rI~~~a~k~~~~grCPACRr~Yde~ 63 (810)
+...||-|-... ..+.|+ ||- ..|..|-... ....||.|-.+-...
T Consensus 625 g~RfCpsCG~~t-----~~frCP~CG~~Te~i~fCP~CG~~~--------~~y~CPKCG~El~~~ 676 (1121)
T PRK04023 625 GRRKCPSCGKET-----FYRRCPFCGTHTEPVYRCPRCGIEV--------EEDECEKCGREPTPY 676 (1121)
T ss_pred cCccCCCCCCcC-----CcccCCCCCCCCCcceeCccccCcC--------CCCcCCCCCCCCCcc
Confidence 346899999985 668999 984 4788883332 346799998765543
No 242
>PF12861 zf-Apc11: Anaphase-promoting complex subunit 11 RING-H2 finger
Probab=28.04 E-value=39 Score=31.45 Aligned_cols=28 Identities=32% Similarity=0.778 Sum_probs=21.5
Q ss_pred hhhhhhHhHhHhhhhhccccCCCCCCCCCCccccccc
Q 003574 31 EICVWCWHHIMDMAEKEETEGRCPACRSPYDKEKIVG 67 (810)
Q Consensus 31 QIC~fC~~rI~~~a~k~~~~grCPACRr~Yde~~i~~ 67 (810)
..|..|...+ +|-||.|+.|-|+-++++
T Consensus 22 d~CgICr~~f---------dg~Cp~Ck~Pgd~Cplv~ 49 (85)
T PF12861_consen 22 DVCGICRMPF---------DGCCPDCKFPGDDCPLVW 49 (85)
T ss_pred CceeeEeccc---------ccCCCCccCCCCCCceee
Confidence 4566666665 789999999999887754
No 243
>PRK11823 DNA repair protein RadA; Provisional
Probab=27.81 E-value=29 Score=39.82 Aligned_cols=24 Identities=38% Similarity=0.882 Sum_probs=16.5
Q ss_pred CCccccC-CCchhhhhhHhHhHhhhhhccccCCCCCCCC
Q 003574 21 QQLKPCK-CGYEICVWCWHHIMDMAEKEETEGRCPACRS 58 (810)
Q Consensus 21 ~~F~PC~-CGYQIC~fC~~rI~~~a~k~~~~grCPACRr 58 (810)
+..|-|. |||+- ..-.|+||+|..
T Consensus 5 ~~~y~C~~Cg~~~--------------~~~~g~Cp~C~~ 29 (446)
T PRK11823 5 KTAYVCQECGAES--------------PKWLGRCPECGA 29 (446)
T ss_pred CCeEECCcCCCCC--------------cccCeeCcCCCC
Confidence 4456687 78871 234789999955
No 244
>PF05605 zf-Di19: Drought induced 19 protein (Di19), zinc-binding; InterPro: IPR008598 This entry consists of several drought induced 19 (Di19) like and RING finger 114 proteins. Di19 has been found to be strongly expressed in both the roots and leaves of Arabidopsis thaliana during progressive drought [], whilst RING finger proteins are thought to play a role in spermatogenesis. The precise function is unknown.
Probab=27.16 E-value=31 Score=28.39 Aligned_cols=39 Identities=28% Similarity=0.571 Sum_probs=22.7
Q ss_pred CCCCCCcccCCCcCCCCccccCCCchhhhhhHhHhHhhhhhccccCCCCCCCCC
Q 003574 6 EKTCPLCAEEMDLTDQQLKPCKCGYEICVWCWHHIMDMAEKEETEGRCPACRSP 59 (810)
Q Consensus 6 d~~CPLC~EelD~tD~~F~PC~CGYQIC~fC~~rI~~~a~k~~~~grCPACRr~ 59 (810)
.-.||.|-+.+|...+ + .++.+.=..+..+..||-|...
T Consensus 2 ~f~CP~C~~~~~~~~L--------------~-~H~~~~H~~~~~~v~CPiC~~~ 40 (54)
T PF05605_consen 2 SFTCPYCGKGFSESSL--------------V-EHCEDEHRSESKNVVCPICSSR 40 (54)
T ss_pred CcCCCCCCCccCHHHH--------------H-HHHHhHCcCCCCCccCCCchhh
Confidence 3579999997774321 1 2333311123446889999763
No 245
>smart00064 FYVE Protein present in Fab1, YOTB, Vac1, and EEA1. The FYVE zinc finger is named after four proteins where it was first found: Fab1, YOTB/ZK632.12, Vac1, and EEA1. The FYVE finger has been shown to bind two Zn2+ ions. The FYVE finger has eight potential zinc coordinating cysteine positions. The FYVE finger is structurally related to the PF10571 UPF0547: Uncharacterised protein family UPF0547; InterPro: IPR018886 This domain may well be a type of zinc-finger as it carries two pairs of highly conserved cysteine residues though with no accompanying histidines. Several members are annotated as putative helicases.
Probab=26.31 E-value=42 Score=24.77 Aligned_cols=21 Identities=48% Similarity=1.187 Sum_probs=13.4
Q ss_pred CCCCcccCCCcCCCCccccC-CCch
Q 003574 8 TCPLCAEEMDLTDQQLKPCK-CGYE 31 (810)
Q Consensus 8 ~CPLC~EelD~tD~~F~PC~-CGYQ 31 (810)
.||-|-.++- ..-+-|+ |||.
T Consensus 2 ~CP~C~~~V~---~~~~~Cp~CG~~ 23 (26)
T PF10571_consen 2 TCPECGAEVP---ESAKFCPHCGYD 23 (26)
T ss_pred cCCCCcCCch---hhcCcCCCCCCC
Confidence 5777777774 4445566 6664
No 247
>KOG1492 consensus C3H1-type Zn-finger protein [General function prediction only]
Probab=26.29 E-value=25 Score=37.83 Aligned_cols=26 Identities=35% Similarity=0.759 Sum_probs=21.1
Q ss_pred CcccccCCCCCCCCCCcccccCCCCCC
Q 003574 193 YCHAWLRNVPCTNPDCLYLHEVGSQED 219 (810)
Q Consensus 193 YCs~FLRg~~C~N~dC~YLHE~g~~~D 219 (810)
-|.+||-| +|.||+|.|+|-.-.+..
T Consensus 263 acryfllg-kcnnpncryvhihysena 288 (377)
T KOG1492|consen 263 ACRYFLLG-KCNNPNCRYVHIHYSENA 288 (377)
T ss_pred hhhhhhhc-cCCCCCceEEEEeecCCC
Confidence 47888876 699999999998766654
No 248
>COG0724 RNA-binding proteins (RRM domain) [General function prediction only]
Probab=25.62 E-value=73 Score=30.59 Aligned_cols=77 Identities=14% Similarity=0.299 Sum_probs=49.8
Q ss_pred ccccccccccCeEEEeCCCCCCChhHHHHHHHhhccCcceeEEEEeecCCCcccccCCCceEEEEEeCCHHHHHHHHHHh
Q 003574 95 QLSSVRVIQRNLVYIVGLPLNLGDEDLLQRREYFGQYGKVLKVSMSRTAAGVIQQFPNNTCSVYITYSKEEEAVRCIQSV 174 (810)
Q Consensus 95 ~LanvRVIQkNLVYV~GLP~~iaEEDLLr~~EyFGQYGkI~KIvInrdk~g~~~q~~~~~gsAYVTFs~~EDA~rAI~aL 174 (810)
........+...+|+.+++..++.+++ ...|..+|.|..+.+....... ......++.+....++..+....
T Consensus 216 ~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~ 287 (306)
T COG0724 216 RGKALLLEKSDNLYVGNLPLKTAEEEL---ADLFKSRGDIVRASLPPSKDGK-----IPKSRSFVGNEASKDALESNSRG 287 (306)
T ss_pred ccccccccccceeeccccccccchhHH---HHhccccccceeeeccCCCCCc-----ccccccccchhHHHhhhhhhccc
Confidence 444445566778999999999999998 8999999999666665443322 12223345566656666555544
Q ss_pred CCCcc
Q 003574 175 HGFVL 179 (810)
Q Consensus 175 DG~~L 179 (810)
.+...
T Consensus 288 ~~~~~ 292 (306)
T COG0724 288 NKKKI 292 (306)
T ss_pred cceee
Confidence 43333
No 249
>KOG1001 consensus Helicase-like transcription factor HLTF/DNA helicase RAD5, DEAD-box superfamily [Transcription; Replication, recombination and repair]
Probab=25.42 E-value=25 Score=42.79 Aligned_cols=50 Identities=26% Similarity=0.777 Sum_probs=38.3
Q ss_pred CCCCCcccCCCcCCCCccccCCCchhhhhhHhHhHhhhhhccccCCCCCCCCCCccccc
Q 003574 7 KTCPLCAEEMDLTDQQLKPCKCGYEICVWCWHHIMDMAEKEETEGRCPACRSPYDKEKI 65 (810)
Q Consensus 7 ~~CPLC~EelD~tD~~F~PC~CGYQIC~fC~~rI~~~a~k~~~~grCPACRr~Yde~~i 65 (810)
..|++|++ .| .+++=.||.-.|.-||-.-.+. ..+..||-||...++...
T Consensus 455 ~~c~ic~~-~~----~~~it~c~h~~c~~c~~~~i~~----~~~~~~~~cr~~l~~~~l 504 (674)
T KOG1001|consen 455 HWCHICCD-LD----SFFITRCGHDFCVECLKKSIQQ----SENAPCPLCRNVLKEKKL 504 (674)
T ss_pred cccccccc-cc----cceeecccchHHHHHHHhcccc----ccCCCCcHHHHHHHHHHH
Confidence 68999999 43 4667789999999999987753 235589999987665544
No 250
>KOG1842 consensus FYVE finger-containing protein [General function prediction only]
Probab=24.34 E-value=30 Score=40.47 Aligned_cols=39 Identities=33% Similarity=0.761 Sum_probs=31.7
Q ss_pred CcccCCCCCCcccCCCcCCCCccccC-CCchhhhhhHhHhH
Q 003574 2 SDEGEKTCPLCAEEMDLTDQQLKPCK-CGYEICVWCWHHIM 41 (810)
Q Consensus 2 sDd~d~~CPLC~EelD~tD~~F~PC~-CGYQIC~fC~~rI~ 41 (810)
.|.+...||+|.+.|-++-+.. =|. ||-.||.+|-.-|-
T Consensus 176 DDs~V~~CP~Ca~~F~l~rRrH-HCRLCG~VmC~~C~k~iS 215 (505)
T KOG1842|consen 176 DDSSVQFCPECANSFGLTRRRH-HCRLCGRVMCRDCSKFIS 215 (505)
T ss_pred CCCcccccccccchhhhHHHhh-hhhhcchHHHHHHHHhcC
Confidence 3556679999999999887654 476 99999999988764
No 251
>KOG2891 consensus Surface glycoprotein [General function prediction only]
Probab=24.23 E-value=24 Score=39.13 Aligned_cols=91 Identities=18% Similarity=0.350 Sum_probs=56.8
Q ss_pred ccCeEEEeCCCCCC-----------ChhHHHHHHHhhccCcceeEEEEeec---------CCCcccccC-----CCceEE
Q 003574 103 QRNLVYIVGLPLNL-----------GDEDLLQRREYFGQYGKVLKVSMSRT---------AAGVIQQFP-----NNTCSV 157 (810)
Q Consensus 103 QkNLVYV~GLP~~i-----------aEEDLLr~~EyFGQYGkI~KIvInrd---------k~g~~~q~~-----~~~gsA 157 (810)
+..+||+.|||-.+ ..|+.| +-.|..||.|-.|.|+.- +..+.|+.. .--+-|
T Consensus 148 rpdti~la~ip~kwf~lkedg~~dlpse~rl--r~a~eafg~ir~vdipicdplr~~mn~kisgiq~~gfg~g~dlffea 225 (445)
T KOG2891|consen 148 RPDTIHLAGIPCKWFALKEDGSEDLPSEDRL--RKAFEAFGEIRNVDIPICDPLREEMNGKISGIQFHGFGFGGDLFFEA 225 (445)
T ss_pred CCCceeecCCcceeeeecccccccCChHHHH--HHHHHHhccceecCCcccchhHHHhcCccccceeeccccCcchhHHH
Confidence 35789999998543 446677 568999999998887532 111111100 011246
Q ss_pred EEEeCCHHHHHHHHHHhCCCcc----CCc----EEEEeecCCCCcc
Q 003574 158 YITYSKEEEAVRCIQSVHGFVL----EGK----SLKACFGTTKYCH 195 (810)
Q Consensus 158 YVTFs~~EDA~rAI~aLDG~~L----DGR----~LRASfGTTKYCs 195 (810)
||.|...---..|+.+|-|..+ +|+ .++|.|-..+.-+
T Consensus 226 yvqfmeykgfa~amdalr~~k~akk~d~~ffqanvkvdfdrsrhls 271 (445)
T KOG2891|consen 226 YVQFMEYKGFAQAMDALRGMKLAKKGDDGFFQANVKVDFDRSRHLS 271 (445)
T ss_pred HHHHHHHHhHHHHHHHHhcchHHhhcCCcccccccccccchhhhhh
Confidence 7877777666777777877653 454 4677777666543
No 252
>KOG1812 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=23.94 E-value=39 Score=38.39 Aligned_cols=35 Identities=26% Similarity=0.751 Sum_probs=27.7
Q ss_pred CCCCCcccCCCcCC-CCccccCCCchhhhhhHhHhH
Q 003574 7 KTCPLCAEEMDLTD-QQLKPCKCGYEICVWCWHHIM 41 (810)
Q Consensus 7 ~~CPLC~EelD~tD-~~F~PC~CGYQIC~fC~~rI~ 41 (810)
..||.|.-.++++. =+..-|.||+|+|.-|....+
T Consensus 307 r~CpkC~~~ie~~~GCnhm~CrC~~~fcy~C~~~~~ 342 (384)
T KOG1812|consen 307 RQCPKCKFMIELSEGCNHMTCRCGHQFCYMCGGDWK 342 (384)
T ss_pred CcCcccceeeeecCCcceEEeeccccchhhcCcchh
Confidence 57999988776655 456899999999988886654
No 253
>KOG2318 consensus Uncharacterized conserved protein [Function unknown]
Probab=22.97 E-value=3.1e+02 Score=33.50 Aligned_cols=79 Identities=16% Similarity=0.186 Sum_probs=57.6
Q ss_pred cCeEEEeCCCCC-CChhHHHHHHHhhccCc-ceeEEEEeecCCCcc------cccC------------------------
Q 003574 104 RNLVYIVGLPLN-LGDEDLLQRREYFGQYG-KVLKVSMSRTAAGVI------QQFP------------------------ 151 (810)
Q Consensus 104 kNLVYV~GLP~~-iaEEDLLr~~EyFGQYG-kI~KIvInrdk~g~~------~q~~------------------------ 151 (810)
.+.|=|+||.|. +.-++||.----|-.+| .|+.|.|.....|.. -++|
T Consensus 174 T~RLAVvNMDWd~v~AkDL~v~~nSFlP~gGsilSV~IYpSeFGkeRM~eEeV~GP~~el~~~~e~~~~s~sD~ee~~~~ 253 (650)
T KOG2318|consen 174 TKRLAVVNMDWDRVKAKDLFVLFNSFLPKGGSILSVKIYPSEFGKERMKEEEVHGPPKELFKPVEEYKESESDDEEEEDV 253 (650)
T ss_pred cceeeEeccccccccHHHHHHHHHhhcCCCCceeEEEechhhhhHHHhhhhcccCChhhhccccccCcccccchhhhhhH
Confidence 467899999987 66778865455666777 999999865433210 0122
Q ss_pred ------------CCceEEEEEeCCHHHHHHHHHHhCCCccCCc
Q 003574 152 ------------NNTCSVYITYSKEEEAVRCIQSVHGFVLEGK 182 (810)
Q Consensus 152 ------------~~~gsAYVTFs~~EDA~rAI~aLDG~~LDGR 182 (810)
-.-|+|-|+|...+.|..--..+||.++.--
T Consensus 254 ~~~kLR~Yq~~rLkYYyAVvecDsi~tA~~vYe~CDG~EfEsS 296 (650)
T KOG2318|consen 254 DREKLRQYQLNRLKYYYAVVECDSIETAKAVYEECDGIEFESS 296 (650)
T ss_pred HHHHHHHHHhhhheeEEEEEEecCchHHHHHHHhcCcceeccc
Confidence 1246888999999999999999999998743
No 254
>PRK03681 hypA hydrogenase nickel incorporation protein; Validated
Probab=22.32 E-value=41 Score=32.06 Aligned_cols=20 Identities=25% Similarity=0.659 Sum_probs=10.0
Q ss_pred CCCCcccCCCcCCCCccccC
Q 003574 8 TCPLCAEEMDLTDQQLKPCK 27 (810)
Q Consensus 8 ~CPLC~EelD~tD~~F~PC~ 27 (810)
.|+-|-..+.+.+..+++||
T Consensus 72 ~C~~Cg~~~~~~~~~~~~CP 91 (114)
T PRK03681 72 WCETCQQYVTLLTQRVRRCP 91 (114)
T ss_pred EcccCCCeeecCCccCCcCc
Confidence 35555555544444444455
No 255
>cd01121 Sms Sms (bacterial radA) DNA repair protein. This protein is not related to archael radA any more than is to other RecA-like NTPases. Sms has a role in recombination and recombinational repair and is responsible for the stabilization or processing of branched DNA molecules.
Probab=22.01 E-value=41 Score=37.97 Aligned_cols=10 Identities=40% Similarity=1.092 Sum_probs=8.2
Q ss_pred ccCCCCCCCC
Q 003574 49 TEGRCPACRS 58 (810)
Q Consensus 49 ~~grCPACRr 58 (810)
-.|+||+|..
T Consensus 13 ~~g~cp~c~~ 22 (372)
T cd01121 13 WLGKCPECGE 22 (372)
T ss_pred ccEECcCCCC
Confidence 4799999965
No 256
>smart00647 IBR In Between Ring fingers. the domains occurs between pairs og RING fingers
Probab=20.96 E-value=48 Score=26.97 Aligned_cols=33 Identities=33% Similarity=0.781 Sum_probs=23.2
Q ss_pred CCCCC--CcccCCCcC---CCCcccc-CCCchhhhhhHh
Q 003574 6 EKTCP--LCAEEMDLT---DQQLKPC-KCGYEICVWCWH 38 (810)
Q Consensus 6 d~~CP--LC~EelD~t---D~~F~PC-~CGYQIC~fC~~ 38 (810)
-.-|| -|-..+... +....-| .||+.+|..|..
T Consensus 18 ~~~CP~~~C~~~~~~~~~~~~~~v~C~~C~~~fC~~C~~ 56 (64)
T smart00647 18 LKWCPAPDCSAAIIVTEEEGCNRVTCPKCGFSFCFRCKV 56 (64)
T ss_pred ccCCCCCCCcceEEecCCCCCCeeECCCCCCeECCCCCC
Confidence 34688 886666554 4667889 799998777743
No 257
>PF14835 zf-RING_6: zf-RING of BARD1-type protein; PDB: 1JM7_B.
Probab=20.80 E-value=60 Score=28.99 Aligned_cols=46 Identities=20% Similarity=0.538 Sum_probs=20.4
Q ss_pred CCCCCCcccCCCcCCCCccccCCCchhhhhhHhHhHhhhhhccccCCCCCCCCCCcc
Q 003574 6 EKTCPLCAEEMDLTDQQLKPCKCGYEICVWCWHHIMDMAEKEETEGRCPACRSPYDK 62 (810)
Q Consensus 6 d~~CPLC~EelD~tD~~F~PC~CGYQIC~fC~~rI~~~a~k~~~~grCPACRr~Yde 62 (810)
-.-|+.|.+-|+ ..+--=.|.+-+|.-|...-. ...||.|+.|--.
T Consensus 7 lLrCs~C~~~l~---~pv~l~~CeH~fCs~Ci~~~~--------~~~CPvC~~Paw~ 52 (65)
T PF14835_consen 7 LLRCSICFDILK---EPVCLGGCEHIFCSSCIRDCI--------GSECPVCHTPAWI 52 (65)
T ss_dssp TTS-SSS-S--S---S-B---SSS--B-TTTGGGGT--------TTB-SSS--B-S-
T ss_pred hcCCcHHHHHhc---CCceeccCccHHHHHHhHHhc--------CCCCCCcCChHHH
Confidence 357999998886 333233689998888875432 3459999986543
No 258
>PRK14873 primosome assembly protein PriA; Provisional
Probab=20.62 E-value=1e+02 Score=37.68 Aligned_cols=52 Identities=23% Similarity=0.609 Sum_probs=30.6
Q ss_pred CCCCCcccCCCcCCCCccccCCCchhhhhhHhHhHhhhhhccccCCCCCCCCCCccccccccccChhHHH
Q 003574 7 KTCPLCAEEMDLTDQQLKPCKCGYEICVWCWHHIMDMAEKEETEGRCPACRSPYDKEKIVGMAAKCESME 76 (810)
Q Consensus 7 ~~CPLC~EelD~tD~~F~PC~CGYQIC~fC~~rI~~~a~k~~~~grCPACRr~Yde~~i~~~~~~~e~~~ 76 (810)
..||-|--.|...-. -+.-.|.||-+.. ...+||.|-.. .+.....-.|+.+
T Consensus 393 ~~C~~C~~~L~~h~~------~~~l~Ch~CG~~~--------~p~~Cp~Cgs~----~l~~~g~Gter~e 444 (665)
T PRK14873 393 ARCRHCTGPLGLPSA------GGTPRCRWCGRAA--------PDWRCPRCGSD----RLRAVVVGARRTA 444 (665)
T ss_pred eECCCCCCceeEecC------CCeeECCCCcCCC--------cCccCCCCcCC----cceeeeccHHHHH
Confidence 468888888875321 1234567776543 25689999663 2444444555543
No 259
>PF12677 DUF3797: Domain of unknown function (DUF3797); InterPro: IPR024256 This presumed domain is functionally uncharacterised. This domain family is found in bacteria and viruses, and is approximately 50 amino acids in length. There is a conserved CGN sequence motif.
Probab=20.40 E-value=41 Score=28.53 Aligned_cols=26 Identities=31% Similarity=0.994 Sum_probs=18.5
Q ss_pred CCCCCcccCC--------CcCCCCc-cccCCCchh
Q 003574 7 KTCPLCAEEM--------DLTDQQL-KPCKCGYEI 32 (810)
Q Consensus 7 ~~CPLC~Eel--------D~tD~~F-~PC~CGYQI 32 (810)
..||-|-.+. .+.|--| +.|+||+.|
T Consensus 14 ~~Cp~CGN~~vGngEG~liV~edtfkRtCkCGfni 48 (49)
T PF12677_consen 14 CKCPKCGNDKVGNGEGTLIVEEDTFKRTCKCGFNI 48 (49)
T ss_pred ccCcccCCcEeecCcceEEEeccceeeeecccccc
Confidence 4789997654 3445555 899999875
Done!