Query 003574
Match_columns 810
No_of_seqs 240 out of 1201
Neff 3.6
Searched_HMMs 29240
Date Tue Mar 26 17:49:51 2013
Command hhsearch -i /local_scratch/syshi/lefta3m/003574.a3m -d /local_scratch/syshi/pdb70.hhm -v 0 -o /local_scratch/syshi/H1_1624-1627//hhsearch_pdb/003574hhsearch_pdb
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 2cpi_A CCR4-NOT transcription 1.0 1 1 145.3 11.2 102 95-198 6-107 (111)
2 4fxv_A ELAV-like protein 1; RN 1.0 1 1 122.1 10.6 83 101-191 16-98 (99)
3 3pgw_S U1-70K; protein-RNA com 1.0 1 1 121.3 12.4 93 97-197 95-187 (437)
4 3n9u_C Cleavage and polyadenyl 1.0 1 1 118.5 7.8 85 103-195 54-140 (156)
5 2lxi_A RNA-binding protein 10; 1.0 1 1 118.2 5.5 82 104-193 1-84 (91)
6 3s8s_A Histone-lysine N-methyl 1.0 1 1 117.9 11.0 83 102-192 4-86 (110)
7 4f25_A Polyadenylate-binding p 1.0 1 1 117.7 10.3 80 104-193 5-84 (115)
8 3q2s_C Cleavage and polyadenyl 1.0 1 1 116.9 7.9 85 103-195 67-153 (229)
9 3ns6_A Eukaryotic translation 1.0 1 1 116.5 5.0 82 103-192 5-93 (100)
10 2lkz_A RNA-binding protein 5; 1.0 1 1 114.8 7.8 81 103-191 8-94 (95)
No 1
>2cpi_A CCR4-NOT transcription complex subunit 4; RNA recognition motif, RRM, RNP, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: d.58.7.1
Probab=1.00 E-value=1 Score=145.25 Aligned_cols=102 Identities=43% Similarity=0.738 Sum_probs=89.5
Q ss_pred CCCCCCCCCCCEEEEECCCCCCCHHHHHHHHHHHCCCCCEEEEEEEECCCCCCCCCCCCCEEEEEEECCHHHHHHHHHHH
Q ss_conf 16665544468699948999999367888898412676426999953278753446899608999949999999999994
Q 003574 95 QLSSVRVIQRNLVYIVGLPLNLGDEDLLQRREYFGQYGKVLKVSMSRTAAGVIQQFPNNTCSVYITYSKEEEAVRCIQSV 174 (810)
Q Consensus 95 ~LanvRVIQKNLVYVvGLP~~iaEEDLLr~~EyFGQYGKI~KIvI~rdk~g~~~q~ps~~gsAYVTFs~kEDA~kAI~aL 174 (810)
+++++|+++++.|||+|||+.+++++|++..++|++||+|.+|.|.+++.+.. ...++++|||+|.+.++|.+||..|
T Consensus 6 ~~~~~r~~~~~~l~V~nLp~~~~~~~l~~~~~~F~~~G~i~~v~i~~~~~~~~--~~~~~G~afV~f~~~~~A~~Ai~~l 83 (111)
T 2cpi_A 6 SGASVRVVQKNLVFVVGLSQRLADPEVLKRPEYFGKFGKIHKVVINNSTSYAG--SQGPSASAYVTYIRSEDALRAIQCV 83 (111)
T ss_dssp SCSCCCCCCSSCEEEEEECTTTCCHHHHHSTTTTTTTSCEEEEEEECCSSCCS--SSCCCEEEEEEESSHHHHHHHHHHH
T ss_pred CCCCCCCCCCCEEEEECCCCCCCHHHHHHHHHHHHCCCCEEEEEEECCCCCCC--CCCCCEEEEEEECCHHHHHHHHHHH
T ss_conf 87652206888799979998779999988888861468888999844778676--6787768999978699999999981
Q ss_pred CCCCCCCCEEEEEECCCCCCCCCC
Q ss_conf 797019908999653887754445
Q 003574 175 HGFVLEGKSLKACFGTTKYCHAWL 198 (810)
Q Consensus 175 DG~~LDGRvLRASfGTTKYCssFL 198 (810)
||..++||.|+|.|+++|+|+.|-
T Consensus 84 ng~~~~gr~l~V~~a~~k~~~~~~ 107 (111)
T 2cpi_A 84 NNVVVDGRTLKASLGTTKYCSYSG 107 (111)
T ss_dssp TTEEETTEEEEEESCCCCSCSSTT
T ss_pred CCCEECCEEEEEEECCCCCCCCCC
T ss_conf 998799988899964555356668
No 2
>4fxv_A ELAV-like protein 1; RNA recognition motif, putative RNA-binding domain, transcri structural genomics, joint center for structural genomics; 1.90A {Homo sapiens}
Probab=1.00 E-value=1 Score=122.13 Aligned_cols=83 Identities=22% Similarity=0.415 Sum_probs=75.1
Q ss_pred CCCCCEEEEECCCCCCCHHHHHHHHHHHCCCCCEEEEEEEECCCCCCCCCCCCCEEEEEEECCHHHHHHHHHHHCCCCCC
Q ss_conf 44468699948999999367888898412676426999953278753446899608999949999999999994797019
Q 003574 101 VIQRNLVYIVGLPLNLGDEDLLQRREYFGQYGKVLKVSMSRTAAGVIQQFPNNTCSVYITYSKEEEAVRCIQSVHGFVLE 180 (810)
Q Consensus 101 VIQKNLVYVvGLP~~iaEEDLLr~~EyFGQYGKI~KIvI~rdk~g~~~q~ps~~gsAYVTFs~kEDA~kAI~aLDG~~LD 180 (810)
-.|.+.|||+|||+.+++++| +++|++||+|..|.|.+++.++ .++|+|||+|.+.++|.+||..+||..++
T Consensus 16 ~~~gt~lfV~nLp~~~te~~L---~~~F~~~G~I~~v~i~~d~~tg-----~~kG~afV~f~~~~~A~~Ai~~lng~~~~ 87 (99)
T 4fxv_A 16 YFQGTNLIVNYLPQNMTQDEL---RSLFSSIGEVESAKLIRDKVAG-----HSLGYGFVNYVTAKDAERAINTLNGLRLQ 87 (99)
T ss_dssp CCCCSEEEEESCCTTCCHHHH---HHHHHTTSCEEEEEEEECSSSC-----CEEEEEEEEESSHHHHHHHHHHHTTCEET
T ss_pred CCCCCEEEEECCCCCCCHHHH---HHHHHHCCCEEEEEEEECCCCC-----CCCCCEEEEECCHHHHHHHHHHHCCCEEC
T ss_conf 078999999399998999999---9999714988886754538889-----50621899987999999999984899899
Q ss_pred CCEEEEEECCC
Q ss_conf 90899965388
Q 003574 181 GKSLKACFGTT 191 (810)
Q Consensus 181 GRvLRASfGTT 191 (810)
||.|+|.|+.+
T Consensus 88 gr~l~V~~AkP 98 (99)
T 4fxv_A 88 SKTIKVSYARP 98 (99)
T ss_dssp TEECEEEECCB
T ss_pred CEEEEEEEEEC
T ss_conf 99989997018
No 3
>3pgw_S U1-70K; protein-RNA complex, U1 snRNA, SM fold, SM core, RRM, splici SNRNPS, splicing factors; HET: DNA; 4.40A {Homo sapiens} PDB: 3cw1_K 2l5i_A 2l5j_A*
Probab=1.00 E-value=1 Score=121.25 Aligned_cols=93 Identities=13% Similarity=0.294 Sum_probs=79.2
Q ss_pred CCCCCCCCCEEEEECCCCCCCHHHHHHHHHHHCCCCCEEEEEEEECCCCCCCCCCCCCEEEEEEECCHHHHHHHHHHHCC
Q ss_conf 66554446869994899999936788889841267642699995327875344689960899994999999999999479
Q 003574 97 SSVRVIQRNLVYIVGLPLNLGDEDLLQRREYFGQYGKVLKVSMSRTAAGVIQQFPNNTCSVYITYSKEEEAVRCIQSVHG 176 (810)
Q Consensus 97 anvRVIQKNLVYVvGLP~~iaEEDLLr~~EyFGQYGKI~KIvI~rdk~g~~~q~ps~~gsAYVTFs~kEDA~kAI~aLDG 176 (810)
..+...+.+.|||+|||+.+++++| .++|++||.|..|.|..++.++ .+.++|||+|.+.++|.+||..|||
T Consensus 95 ~~~~~~~~~~lfV~nL~~~~te~~L---~~~F~~~G~I~~v~i~~d~~tg-----~~kG~aFV~F~~~e~A~~Ai~~lng 166 (437)
T 3pgw_S 95 PNAQGDAFKTLFVARVNYDTTESKL---RREFEVYGPIKRIHMVYSKRSG-----KPRGYAFIEYEHERDMHSAYKHADG 166 (437)
T ss_pred CCCCCCCCCEEEEECCCCCCCHHHH---HHHHHHCCCEEEEEEECCCCCC-----CCCCEEEEEECCHHHHHHHHHHCCC
T ss_conf 4445899987998489998999999---9999870986487741158889-----7351588862358999999997589
Q ss_pred CCCCCCEEEEEECCCCCCCCC
Q ss_conf 701990899965388775444
Q 003574 177 FVLEGKSLKACFGTTKYCHAW 197 (810)
Q Consensus 177 ~~LDGRvLRASfGTTKYCssF 197 (810)
..|+|+.|+|.|+..+-...|
T Consensus 167 ~~i~gr~i~V~~a~~~~~~~~ 187 (437)
T 3pgw_S 167 KKIDGRRVLVDVERGRTVKGW 187 (437)
T ss_pred CEECCEEEEEEEECCCCCCCC
T ss_conf 888998889988178888888
No 4
>3n9u_C Cleavage and polyadenylation specificity factor S; protein-protein complex, coexpression, heterotetramer, mRNA maturation, mRNA cleavage; 1.92A {Homo sapiens}
Probab=1.00 E-value=1 Score=118.50 Aligned_cols=85 Identities=16% Similarity=0.242 Sum_probs=76.1
Q ss_pred CCCEEEEECCCCCCCHHHHHHHHHHHCCCC--CEEEEEEEECCCCCCCCCCCCCEEEEEEECCHHHHHHHHHHHCCCCCC
Q ss_conf 468699948999999367888898412676--426999953278753446899608999949999999999994797019
Q 003574 103 QRNLVYIVGLPLNLGDEDLLQRREYFGQYG--KVLKVSMSRTAAGVIQQFPNNTCSVYITYSKEEEAVRCIQSVHGFVLE 180 (810)
Q Consensus 103 QKNLVYVvGLP~~iaEEDLLr~~EyFGQYG--KI~KIvI~rdk~g~~~q~ps~~gsAYVTFs~kEDA~kAI~aLDG~~LD 180 (810)
....|||+|||+.+++++| +++|++|| +|..|.|.+++.++ ..+|+|||+|.+.++|.+||..|||..++
T Consensus 54 ~~~~lfVgnLp~~~te~~L---~~~F~~~G~i~v~~v~i~~d~~tg-----~skGfaFV~f~~~~~A~~Ai~~lng~~~~ 125 (156)
T 3n9u_C 54 RRAAVYVGSFSWWTTDQQL---IQVIRSIGVYDVVELKFAENRANG-----QSKGYAEVVVASENSVHKLLELLPGKVLN 125 (156)
T ss_dssp --CEEEEECCCTTCCHHHH---HHHHHHTTCCCEEEEEEEECTTTC-----CEEEEEEEEESCHHHHHHHHHHSTTCEET
T ss_pred CCCEEEEECCCCCCCHHHH---HHHHHHHCCCCEEEEEEEECCCCC-----CCCEEEEEEECCHHHHHHHHHHCCCCEEC
T ss_conf 9988999489998999999---999998799617999987449999-----52528999979899999999986999789
Q ss_pred CCEEEEEECCCCCCC
Q ss_conf 908999653887754
Q 003574 181 GKSLKACFGTTKYCH 195 (810)
Q Consensus 181 GRvLRASfGTTKYCs 195 (810)
||.|+|.+++.+...
T Consensus 126 Gr~l~V~~a~~~~~~ 140 (156)
T 3n9u_C 126 GEKVDVRPATRQNLS 140 (156)
T ss_dssp TEECEEEECCHHHHH
T ss_pred CEEEEEEECCCCCCH
T ss_conf 937699884777302
No 5
>2lxi_A RNA-binding protein 10; NMR {Homo sapiens}
Probab=1.00 E-value=1 Score=118.22 Aligned_cols=82 Identities=17% Similarity=0.334 Sum_probs=72.6
Q ss_pred CCEEEEECCCCCCCHHHHHHHHHHHCCCC-CEEEEEEEECCCCCCCCCCCCCEEEEEEECCHHHHHHHHHHHC-CCCCCC
Q ss_conf 68699948999999367888898412676-4269999532787534468996089999499999999999947-970199
Q 003574 104 RNLVYIVGLPLNLGDEDLLQRREYFGQYG-KVLKVSMSRTAAGVIQQFPNNTCSVYITYSKEEEAVRCIQSVH-GFVLEG 181 (810)
Q Consensus 104 KNLVYVvGLP~~iaEEDLLr~~EyFGQYG-KI~KIvI~rdk~g~~~q~ps~~gsAYVTFs~kEDA~kAI~aLD-G~~LDG 181 (810)
.|.|||.|||+.+++++| +++|++|| +|..|.|.+++.++ .++|+|||+|.+.++|.+||..++ +..++|
T Consensus 1 S~~i~v~nLp~~~te~~l---~~~F~~~G~~v~~v~i~~d~~t~-----~~rg~aFV~F~~~~~A~~Ai~~~~~~~~~~g 72 (91)
T 2lxi_A 1 SNIVMLRMLPQAATEDDI---RGQLQSHGVQAREVRLMRNKSSG-----QSRGFAFVEFSHLQDATRWMEANQHSLNILG 72 (91)
T ss_dssp CCEEEEETCCSSCCHHHH---HHHHHHHTCCCSBCCSSSCSSSC-----CCSSEEEEECSSHHHHHHHHHTTTTEEEETT
T ss_pred CCEEEEECCCCCCCHHHH---HHHHHHHCCEEEEEEEEECCCCC-----CCCCEEEEEECCHHHHHHHHHHCCCCEEECC
T ss_conf 999999499999999999---98998749875899998549999-----8575289996499999999996279908999
Q ss_pred CEEEEEECCCCC
Q ss_conf 089996538877
Q 003574 182 KSLKACFGTTKY 193 (810)
Q Consensus 182 RvLRASfGTTKY 193 (810)
|.|+|.|+.+|-
T Consensus 73 r~i~V~~a~~~~ 84 (91)
T 2lxi_A 73 QKVSMHYSDPKP 84 (91)
T ss_dssp EEEEEECCCSCC
T ss_pred EEEEEEECCCCC
T ss_conf 999999858999
No 6
>3s8s_A Histone-lysine N-methyltransferase SETD1A; chromatin modification, transcription regulation, structural genomics, structural genomics consortium; 1.30A {Homo sapiens}
Probab=1.00 E-value=1 Score=117.93 Aligned_cols=83 Identities=16% Similarity=0.186 Sum_probs=74.5
Q ss_pred CCCCEEEEECCCCCCCHHHHHHHHHHHCCCCCEEEEEEEECCCCCCCCCCCCCEEEEEEECCHHHHHHHHHHHCCCCCCC
Q ss_conf 44686999489999993678888984126764269999532787534468996089999499999999999947970199
Q 003574 102 IQRNLVYIVGLPLNLGDEDLLQRREYFGQYGKVLKVSMSRTAAGVIQQFPNNTCSVYITYSKEEEAVRCIQSVHGFVLEG 181 (810)
Q Consensus 102 IQKNLVYVvGLP~~iaEEDLLr~~EyFGQYGKI~KIvI~rdk~g~~~q~ps~~gsAYVTFs~kEDA~kAI~aLDG~~LDG 181 (810)
...+.|||+||++.+++++| +++|++||+|.+|.|.+++.++ .++|+|||+|.+.++|.+||+.|||..++|
T Consensus 4 ~p~~~lfV~nL~~~~te~~L---~~~F~~~G~i~~v~i~~d~~tg-----~~rG~aFV~f~~~~~A~~Ai~~lng~~~~g 75 (110)
T 3s8s_A 4 IPLKEVTFARLNDNVRETFL---KDMCRKYGEVEEVEILLHPRTR-----KHLGLARVLFTSTRGAKETVKNLHLTSVMG 75 (110)
T ss_dssp SCCCEEEEESCCTTCCHHHH---HHHHTTTSCEEEEEEEECTTTC-----CEEEEEEEEESSHHHHHHHHHHHTTCEETT
T ss_pred CCCCEEEEECCCCCCCHHHH---HHHHHHCCCEEEEEEEECCCCC-----CEEEEEEEEECCHHHHHHHHHHHCCCEECC
T ss_conf 99838999799999999999---9999856974489997779999-----460699999897999999999848998898
Q ss_pred CEEEEEECCCC
Q ss_conf 08999653887
Q 003574 182 KSLKACFGTTK 192 (810)
Q Consensus 182 RvLRASfGTTK 192 (810)
|.|+|.++..+
T Consensus 76 r~i~V~~a~~~ 86 (110)
T 3s8s_A 76 NIIHAQLDIKG 86 (110)
T ss_dssp EECEEEECSTT
T ss_pred EEEEEEECCCC
T ss_conf 08999988887
No 7
>4f25_A Polyadenylate-binding protein 1; RRM fold, translation initiation, RNA-binding, EIF4G-binding translation; 1.90A {Homo sapiens} PDB: 4f26_A 2k8g_A
Probab=1.00 E-value=1 Score=117.74 Aligned_cols=80 Identities=16% Similarity=0.359 Sum_probs=72.3
Q ss_pred CCEEEEECCCCCCCHHHHHHHHHHHCCCCCEEEEEEEECCCCCCCCCCCCCEEEEEEECCHHHHHHHHHHHCCCCCCCCE
Q ss_conf 68699948999999367888898412676426999953278753446899608999949999999999994797019908
Q 003574 104 RNLVYIVGLPLNLGDEDLLQRREYFGQYGKVLKVSMSRTAAGVIQQFPNNTCSVYITYSKEEEAVRCIQSVHGFVLEGKS 183 (810)
Q Consensus 104 KNLVYVvGLP~~iaEEDLLr~~EyFGQYGKI~KIvI~rdk~g~~~q~ps~~gsAYVTFs~kEDA~kAI~aLDG~~LDGRv 183 (810)
...|||+|||+.+++++| +++|++||+|..|.|.+++.+ ++++|||+|.+.++|.+||..|||..++||.
T Consensus 5 ~~~lfV~nLp~~~te~~L---~~~F~~~G~v~~v~i~~d~~~-------~kg~afV~f~~~~~A~~Ai~~l~~~~~~g~~ 74 (115)
T 4f25_A 5 SGNIFIKNLDKSIDNKAL---YDTFSAFGNILSCKVVCDENG-------SKGYGFVHFETQEAAERAIEKMNGMLLNDRK 74 (115)
T ss_dssp CCEEEEESCCTTCCHHHH---HHHHGGGSCEEEEEEEEETTE-------EEEEEEEEESCHHHHHHHHHHHTTCEETTEE
T ss_pred CCEEEECCCCCCCCHHHH---HHHHHCCCCEEEEEEEECCCC-------CCCEEEEEECCHHHHHHHHHHCCCCEECCEE
T ss_conf 989998889998899999---999822697778887633899-------8863899989999999999983998889999
Q ss_pred EEEEECCCCC
Q ss_conf 9996538877
Q 003574 184 LKACFGTTKY 193 (810)
Q Consensus 184 LRASfGTTKY 193 (810)
|+|.++..+.
T Consensus 75 i~V~~a~~~~ 84 (115)
T 4f25_A 75 VFVGRFKSRK 84 (115)
T ss_dssp CEEEESSCCC
T ss_pred EEEEECCCCC
T ss_conf 7999888864
No 8
>3q2s_C Cleavage and polyadenylation specificity factor S; CFIM, CFIM25, CFIM68, CPSF5, CPSF6, CPSF, 3' END processing, processing, cleavage factor; 2.90A {Homo sapiens} PDB: 3q2t_C
Probab=1.00 E-value=1 Score=116.91 Aligned_cols=85 Identities=18% Similarity=0.200 Sum_probs=76.0
Q ss_pred CCCEEEEECCCCCCCHHHHHHHHHHHCCCC--CEEEEEEEECCCCCCCCCCCCCEEEEEEECCHHHHHHHHHHHCCCCCC
Q ss_conf 468699948999999367888898412676--426999953278753446899608999949999999999994797019
Q 003574 103 QRNLVYIVGLPLNLGDEDLLQRREYFGQYG--KVLKVSMSRTAAGVIQQFPNNTCSVYITYSKEEEAVRCIQSVHGFVLE 180 (810)
Q Consensus 103 QKNLVYVvGLP~~iaEEDLLr~~EyFGQYG--KI~KIvI~rdk~g~~~q~ps~~gsAYVTFs~kEDA~kAI~aLDG~~LD 180 (810)
....|||+||++.+++++| +++|.+|| +|.+|.|.+++.++ ..+++|||+|.+.++|.+||..|||..|+
T Consensus 67 ~~~~lfVgnL~~~~te~~L---~~~F~~~G~~~v~~v~i~~d~~tg-----~skGfaFV~f~~~~~a~~Ai~~lng~~~~ 138 (229)
T 3q2s_C 67 KRIALYIGNLTWWTTDEDL---TEAVHSLGVNDILEIKFFENRANG-----QSKGFALVGVGSEASSKKLMDLLPKRELH 138 (229)
T ss_dssp --CEEEEESCCTTCCHHHH---HHHHHTTTCCCEEEEEEEECTTTC-----CEEEEEEEEESCTTHHHHHHTTSTTSCBT
T ss_pred CCCEEEEECCCCCCCHHHH---HHHHHHHCCCCEEEEEEEECCCCC-----CCCEEEEEEECCHHHHHHHHHHCCCCEEC
T ss_conf 8408998598998999999---999998789635899987548999-----50538999979899999999985898679
Q ss_pred CCEEEEEECCCCCCC
Q ss_conf 908999653887754
Q 003574 181 GKSLKACFGTTKYCH 195 (810)
Q Consensus 181 GRvLRASfGTTKYCs 195 (810)
||.|+|.|+..+...
T Consensus 139 Gr~l~V~~a~~~~~~ 153 (229)
T 3q2s_C 139 GQNPVVTPVNKQFLS 153 (229)
T ss_dssp TBCCEEEECCHHHHH
T ss_pred CEEEEEEECCCCCCC
T ss_conf 988699877777654
No 9
>3ns6_A Eukaryotic translation initiation factor 3 subuni; 1.25A {Saccharomyces cerevisiae} PDB: 3ns5_A
Probab=1.00 E-value=1 Score=116.48 Aligned_cols=82 Identities=18% Similarity=0.254 Sum_probs=73.4
Q ss_pred CCCEEEEECCCC------CCCHHHHHHHHHHHCCCCCEEEEEEEECCCCCCCCCCCCCEEEEEEECCHHHHHHHHHHHCC
Q ss_conf 468699948999------99936788889841267642699995327875344689960899994999999999999479
Q 003574 103 QRNLVYIVGLPL------NLGDEDLLQRREYFGQYGKVLKVSMSRTAAGVIQQFPNNTCSVYITYSKEEEAVRCIQSVHG 176 (810)
Q Consensus 103 QKNLVYVvGLP~------~iaEEDLLr~~EyFGQYGKI~KIvI~rdk~g~~~q~ps~~gsAYVTFs~kEDA~kAI~aLDG 176 (810)
..++|||+|||+ .+++++| +++|++||+|..|.|.+++.++ .++|+|||+|.+.++|.+||..+||
T Consensus 5 ~~~~vfV~nLp~v~~~~~~~~~~~L---~~~F~~~G~i~~v~i~~d~~tg-----~~kG~afV~f~~~~~A~~Ai~~lng 76 (100)
T 3ns6_A 5 SDQYIVVNGAPVIPSAKVPVLKKAL---TSLFSKAGKVVNMEFPIDEATG-----KTKGFLFVECGSMNDAKKIIKSFHG 76 (100)
T ss_dssp GGGEEEEESCCCCBGGGHHHHHHHH---HHHHHTTSCEEEEECCEETTTT-----EECSEEEEEESSHHHHHHHHHHHTT
T ss_pred CCCEEEEECCCCCCHHHHHHHHHHH---HHHHHHCCCEEEEEEEECCCCC-----CCCEEEEEEECCHHHHHHHHHHHCC
T ss_conf 6758999599868757788899999---9999855987699977758999-----6122999998999999999999479
Q ss_pred CCCCC-CEEEEEECCCC
Q ss_conf 70199-08999653887
Q 003574 177 FVLEG-KSLKACFGTTK 192 (810)
Q Consensus 177 ~~LDG-RvLRASfGTTK 192 (810)
..++| |.|+|.++..+
T Consensus 77 ~~~~g~r~l~V~~a~~~ 93 (100)
T 3ns6_A 77 KRLDLKHRLFLYTMKDV 93 (100)
T ss_dssp CBSSSSCBCEEEESHHH
T ss_pred CCCCCCEEEEEEECCHH
T ss_conf 66389707999987605
No 10
>2lkz_A RNA-binding protein 5; RRM; NMR {Homo sapiens}
Probab=1.00 E-value=1 Score=114.81 Aligned_cols=81 Identities=11% Similarity=0.248 Sum_probs=71.5
Q ss_pred CCCEEEEECCCCCCCHHHHHHHHHHHCCCCC--EEEEEEEECCCCCCCCCCCCCEEEEEEECCHHHHHHHHHHHCCC---
Q ss_conf 4686999489999993678888984126764--26999953278753446899608999949999999999994797---
Q 003574 103 QRNLVYIVGLPLNLGDEDLLQRREYFGQYGK--VLKVSMSRTAAGVIQQFPNNTCSVYITYSKEEEAVRCIQSVHGF--- 177 (810)
Q Consensus 103 QKNLVYVvGLP~~iaEEDLLr~~EyFGQYGK--I~KIvI~rdk~g~~~q~ps~~gsAYVTFs~kEDA~kAI~aLDG~--- 177 (810)
.=|+|||.|||+.+++|+| +++|++||+ |.+|.|.+++.++ .++|+|||+|.+.++|.+||+.+||.
T Consensus 8 ~m~tlfV~nL~~~~tee~L---~~~F~~~G~i~v~~v~i~~d~~tg-----~srG~aFV~f~~~~~A~~Ai~~lng~~~~ 79 (95)
T 2lkz_A 8 HMDTIILRNIAPHTVVDSI---MTALSPYASLAVNNIRLIKDKQTQ-----QNRGFAFVQLSSAMDASQLLQILQSLHPP 79 (95)
T ss_dssp CCCEEEEESCCTTCCHHHH---HHHSTTTCCCCGGGEECCCCSSSS-----SCSSEEEEECSSSHHHHHHHHHHHSSSSC
T ss_pred CCCEEEEECCCCCCCHHHH---HHHHHHHCCCCEEEEEEEECCCCC-----CCCEEEEEEECCHHHHHHHHHHHCCCCCC
T ss_conf 2698999289986899999---999986289608999998528999-----77657699989999999999996499988
Q ss_pred -CCCCCEEEEEECCC
Q ss_conf -01990899965388
Q 003574 178 -VLEGKSLKACFGTT 191 (810)
Q Consensus 178 -~LDGRvLRASfGTT 191 (810)
.++||.|+|.|+..
T Consensus 80 ~~i~Gr~i~V~~Aks 94 (95)
T 2lkz_A 80 LKIDGKTIGVDFAKS 94 (95)
T ss_dssp EEETTEEEEEEECCC
T ss_pred CEECCEEEEEEECCC
T ss_conf 409999989998668
Done!