Your job contains 1 sequence.
>003575
MYVIKRDGRKEPVRFDKITARLKKLSYGLSKEHCDPVLVAQKVCAGVYKGVTTTQLDELA
AETAAAMTVNHPDYALLAGRVAVSNLHKITKNSFSETIKDMYNYYNKRSGKKASLVADDV
YEIIMKNAACLDGAIIYDRDFDFDYFGFKTLERSYLLKMDSRVVERPQHMLMRVSVGIHK
DDTDSALKTYHLMSQHWFTHATPTLFNAGTPQPQLSSCFLLCMKDDSIEGIYDTLKKCAI
ISKSAGGIGLSIHNIRASGSYIHGTNGSSNGIVPMLQVFNDTARYVDQGGGKRKGAFAIY
LEPWHADIFEFLDLRKNQGKEECRARDLFYALWVPDLFMERVRDDGKWSLFCPSDASGLA
DSWGIEFEHLYSQYEEEGRAKMVISARKLWFEILNSQIETGTPYMLFKDSCNRKSNQQNL
GTIKSSNLCTEIVEFSSPEETAVCNLASIALPRYVREKGVPVQSNVSKLVGSRDSKNRLF
DFERLAEVTKIITENLNKIIDVNHYPIETTRRSNLRHRPIGIGIQGLADTFILLGLPFES
PEAQQLNKDIFETIYYHALKASAELAVKDGPYETYFGSPMSKGILQVDMWNITPSDRWDW
SSLREMISKNGVRNSLLVAPMPTASTSQILGNNECFEPYTSNIYTRRVLSGEFIVVNKHL
LKDLTELGLWSHALKTKIIYENGSVSKISEIPEELKAIYKTVWEIKQKTLVDMAADRGCY
IDQSQSLNIHMEQPDHGKLTSLHFYAWSKGMKTGMYYLRTRAAADAIKFTVDTSVLNNEK
ANRADNDVEANLAQVVCSLKNQEECMACGS
BLASTP 2.0MP-WashU [04-May-2006] [linux26-i686-ILP32F64 2006-05-09T11:47:08]
Copyright (C) 1996-2006 Washington University, Saint Louis, Missouri USA.
All Rights Reserved.
Reference: Gish, W. (1996-2006) http://blast.wustl.edu
Query= 003575
(810 letters)
Database: go_20130330-seqdb.fasta
368,745 sequences; 169,044,731 total letters.
Searching....10....20....30....40....50....60....70....80....90....100% done
Smallest
Sum
High Probability
Sequences producing High-scoring Segment Pairs: Score P(N) N
TAIR|locus:2052469 - symbol:RNR1 "ribonucleotide reductas... 3401 0. 1
RGD|1592569 - symbol:Rrm1 "ribonucleotide reductase M1" s... 1620 3.7e-293 2
MGI|MGI:98180 - symbol:Rrm1 "ribonucleotide reductase M1"... 1622 6.0e-293 2
UNIPROTKB|P23921 - symbol:RRM1 "Ribonucleoside-diphosphat... 1623 2.9e-291 2
UNIPROTKB|F1MSF1 - symbol:RRM1 "Ribonucleoside-diphosphat... 1622 1.0e-290 2
UNIPROTKB|E2R8P1 - symbol:RRM1 "Ribonucleoside-diphosphat... 1614 1.0e-290 2
UNIPROTKB|Q5R919 - symbol:RRM1 "Ribonucleoside-diphosphat... 1613 2.6e-290 2
ZFIN|ZDB-GENE-990415-247 - symbol:rrm1 "ribonucleotide re... 1603 2.5e-285 2
POMBASE|SPAC1F7.05 - symbol:cdc22 "ribonucleoside reducta... 1624 3.1e-281 3
ASPGD|ASPL0000074083 - symbol:AN4380 species:162425 "Emer... 1644 5.0e-281 3
UNIPROTKB|Q9UW15 - symbol:rnr-1 "Ribonucleoside-diphospha... 1639 1.8e-280 2
CGD|CAL0001524 - symbol:RNR1 species:5476 "Candida albica... 2641 5.7e-277 2
UNIPROTKB|Q5A0N3 - symbol:RNR1 "Ribonucleoside-diphosphat... 2641 5.7e-277 2
SGD|S000000872 - symbol:RNR1 "Major isoform of large subu... 2639 7.2e-277 2
WB|WBGene00004391 - symbol:rnr-1 species:6239 "Caenorhabd... 1588 1.7e-275 2
UNIPROTKB|Q03604 - symbol:rnr-1 "Ribonucleoside-diphospha... 1588 1.7e-275 2
FB|FBgn0011703 - symbol:RnrL "Ribonucleoside diphosphate ... 1559 4.6e-275 2
SGD|S000001328 - symbol:RNR3 "Minor isoform of the large ... 2631 1.2e-273 1
DICTYBASE|DDB_G0284071 - symbol:rnrA "ribonucleoside-diph... 2597 6.0e-273 2
UNIPROTKB|E1C4Q0 - symbol:E1C4Q0 "Ribonucleoside-diphosph... 1632 5.3e-272 2
UNIPROTKB|P50648 - symbol:RNR1 "Ribonucleoside-diphosphat... 1511 3.1e-267 2
UNIPROTKB|O61065 - symbol:RNR1 "Ribonucleoside-diphosphat... 1433 2.1e-259 2
UNIPROTKB|E9PD78 - symbol:RRM1 "Ribonucleoside-diphosphat... 1309 4.9e-258 2
UNIPROTKB|P50647 - symbol:RNR1 "Ribonucleoside-diphosphat... 1459 1.9e-256 2
UNIPROTKB|O15909 - symbol:RNR1 "Ribonucleoside-diphosphat... 2318 1.7e-240 1
UNIPROTKB|F1SUZ5 - symbol:F1SUZ5 "Uncharacterized protein... 1200 7.6e-220 2
UNIPROTKB|E9PL69 - symbol:RRM1 "Ribonucleoside-diphosphat... 1198 4.8e-218 2
UNIPROTKB|Q8SR37 - symbol:ECU10_0920 "Ribonucleoside-diph... 1144 6.3e-214 2
UNIPROTKB|F5H861 - symbol:RRM1 "Ribonucleoside-diphosphat... 1198 8.3e-164 2
CGD|CAL0002354 - symbol:RNR3 species:5476 "Candida albica... 1301 1.2e-134 2
UNIPROTKB|Q59M54 - symbol:RNR3 "Ribonucleoside-diphosphat... 1301 1.2e-134 2
TIGR_CMR|CBU_1553 - symbol:CBU_1553 "ribonucleoside-dipho... 1282 2.3e-133 2
UNIPROTKB|Q886B0 - symbol:nrdA "Ribonucleoside-diphosphat... 1249 5.4e-130 2
UNIPROTKB|Q48FF6 - symbol:nrdA "Ribonucleoside-diphosphat... 1242 3.0e-129 2
UNIPROTKB|Q607W9 - symbol:nrdA "Ribonucleoside-diphosphat... 1231 2.6e-125 1
UNIPROTKB|Q5HXD4 - symbol:nrdA "Ribonucleoside-diphosphat... 681 5.1e-108 4
TIGR_CMR|CJE_0024 - symbol:CJE_0024 "ribonucleoside-dipho... 681 5.1e-108 4
UNIPROTKB|Q71XL1 - symbol:nrdA "Ribonucleoside-diphosphat... 721 2.2e-78 2
TIGR_CMR|NSE_0411 - symbol:NSE_0411 "ribonucleoside-dipho... 287 4.0e-61 3
TIGR_CMR|ECH_0459 - symbol:ECH_0459 "ribonucleoside-dipho... 291 3.4e-58 3
TIGR_CMR|APH_0331 - symbol:APH_0331 "ribonucleoside-dipho... 290 7.7e-56 3
TIGR_CMR|CPS_2328 - symbol:CPS_2328 "ribonucleoside-dipho... 549 1.8e-55 2
UNIPROTKB|Q9KSK0 - symbol:VC1256 "Ribonucleoside-diphosph... 547 2.6e-51 1
TIGR_CMR|VC_1256 - symbol:VC_1256 "ribonucleoside-diphosp... 547 2.6e-51 1
TIGR_CMR|BA_1371 - symbol:BA_1371 "ribonucleoside-diphosp... 494 1.1e-50 2
UNIPROTKB|P00452 - symbol:nrdA species:83333 "Escherichia... 516 2.8e-47 1
UNIPROTKB|I3LEK6 - symbol:I3LEK6 "Ribonucleoside-diphosph... 495 9.9e-47 1
TIGR_CMR|SO_2415 - symbol:SO_2415 "ribonucleoside-diphosp... 502 1.3e-45 1
TIGR_CMR|CHY_0676 - symbol:CHY_0676 "ribonucleoside-dipho... 291 8.4e-43 4
UNIPROTKB|H0YCY7 - symbol:RRM1 "Ribonucleoside-diphosphat... 449 1.1e-41 1
TIGR_CMR|DET_0623 - symbol:DET_0623 "ribonucleotide reduc... 257 8.0e-40 3
TIGR_CMR|GSU_1871 - symbol:GSU_1871 "ribonucleoside-dipho... 254 2.2e-38 3
UNIPROTKB|P0A5W8 - symbol:nrdE "Ribonucleoside-diphosphat... 432 1.1e-37 1
UNIPROTKB|P39452 - symbol:nrdE species:83333 "Escherichia... 425 6.2e-37 1
TIGR_CMR|DET_0345 - symbol:DET_0345 "ribonucleotide reduc... 232 3.3e-34 3
TIGR_CMR|SPO_3194 - symbol:SPO_3194 "ribonucleoside-dipho... 185 7.7e-29 4
UNIPROTKB|Q0C1X7 - symbol:HNE_1555 "Ribonucleoside-diphos... 199 1.6e-27 3
UNIPROTKB|O53767 - symbol:nrdZ "Ribonucleoside-diphosphat... 194 1.1e-26 3
UNIPROTKB|E9PP77 - symbol:RRM1 "Ribonucleoside-diphosphat... 295 4.8e-25 1
TIGR_CMR|DET_0244 - symbol:DET_0244 "ribonucleotide reduc... 157 9.7e-24 4
UNIPROTKB|Q5LRJ1 - symbol:nrdJ "Ribonucleoside-diphosphat... 128 7.4e-12 4
TIGR_CMR|SPO_2136 - symbol:SPO_2136 "ribonucleoside-dipho... 128 7.4e-12 4
>TAIR|locus:2052469 [details] [associations]
symbol:RNR1 "ribonucleotide reductase 1" species:3702
"Arabidopsis thaliana" [GO:0004748 "ribonucleoside-diphosphate
reductase activity, thioredoxin disulfide as acceptor"
evidence=IEA;ISS] [GO:0005524 "ATP binding" evidence=IEA]
[GO:0005737 "cytoplasm" evidence=ISM] [GO:0005971
"ribonucleoside-diphosphate reductase complex" evidence=IEA;ISS]
[GO:0006260 "DNA replication" evidence=IEA;ISS;IMP] [GO:0055114
"oxidation-reduction process" evidence=IEA] [GO:0046686 "response
to cadmium ion" evidence=IEP] [GO:0009202 "deoxyribonucleoside
triphosphate biosynthetic process" evidence=IMP] [GO:0006094
"gluconeogenesis" evidence=RCA] [GO:0006261 "DNA-dependent DNA
replication" evidence=RCA] [GO:0007010 "cytoskeleton organization"
evidence=RCA] [GO:0009165 "nucleotide biosynthetic process"
evidence=RCA] [GO:0010498 "proteasomal protein catabolic process"
evidence=RCA] InterPro:IPR000788 InterPro:IPR008926
InterPro:IPR013346 InterPro:IPR013509 Pfam:PF00317 Pfam:PF02867
PRINTS:PR01183 PROSITE:PS00089 UniPathway:UPA00326 Pfam:PF03477
GO:GO:0005524 GO:GO:0046686 EMBL:CP002685 GenomeReviews:CT485783_GR
GO:GO:0006260 EMBL:AC007019 GO:GO:0009263 KO:K10807
InterPro:IPR005144 PROSITE:PS51161 eggNOG:COG0209 GO:GO:0005971
GO:GO:0004748 SUPFAM:SSF48168 GO:GO:0009202 EMBL:AF092841
EMBL:AY035080 EMBL:BT008573 IPI:IPI00525243 PIR:B84605 PIR:T51813
RefSeq:NP_179770.1 UniGene:At.115 ProteinModelPortal:Q9SJ20
SMR:Q9SJ20 STRING:Q9SJ20 PaxDb:Q9SJ20 PRIDE:Q9SJ20
EnsemblPlants:AT2G21790.1 GeneID:816715 KEGG:ath:AT2G21790
GeneFarm:2079 TAIR:At2g21790 HOGENOM:HOG000057035 InParanoid:Q9SJ20
OMA:PQARNSN PhylomeDB:Q9SJ20 ProtClustDB:PLN02437
Genevestigator:Q9SJ20 GermOnline:AT2G21790 TIGRFAMs:TIGR02506
Uniprot:Q9SJ20
Length = 816
Score = 3401 (1202.3 bits), Expect = 0., P = 0.
Identities = 634/817 (77%), Positives = 724/817 (88%)
Query: 1 MYVIKRDGRKEPVRFDKITARLKKLSYGLSKEHCDPVLVAQKVCAGVYKGVTTTQLDELA 60
MYV+KRDGR+E V FDKITARLKKLSYGLS +HCDPVLVAQKVCAGVYKGVTT+QLDELA
Sbjct: 1 MYVVKRDGRQETVHFDKITARLKKLSYGLSSDHCDPVLVAQKVCAGVYKGVTTSQLDELA 60
Query: 61 AETAAAMTVNHPDYALLAGRVAVSNLHKITKNSFSETIKDMYNYYNKRSGKKASLVADDV 120
AETAAAMT NHPDYA LA R+AVSNLHK TK SFSETIKDM+ + N RSG K+ L+ADDV
Sbjct: 61 AETAAAMTCNHPDYASLAARIAVSNLHKNTKKSFSETIKDMFYHVNDRSGLKSPLIADDV 120
Query: 121 YEIIMKNAACLDGAIIXXXXXXXXXXXXKTLERSYLLKMDSRVVERPQHMLMRVSVGIHK 180
+EIIM+NAA LD II KTLERSYLLK+ VVERPQHMLMRV+VGIHK
Sbjct: 121 FEIIMQNAARLDSEIIYDRDFEYDYFGFKTLERSYLLKVQGTVVERPQHMLMRVAVGIHK 180
Query: 181 DDTDSALKTYHLMSQHWFTHATPTLFNAGTPQPQLSSCFLLCMKDDSIEGIYDTLKKCAI 240
DD DS ++TYHLMSQ WFTHA+PTLFNAGTP+PQLSSCFL+CMKDDSIEGIY+TLK+CA+
Sbjct: 181 DDIDSVIQTYHLMSQRWFTHASPTLFNAGTPRPQLSSCFLVCMKDDSIEGIYETLKECAV 240
Query: 241 ISKSAGGIGLSIHNIRASGSYIHGTNGSSNGIVPMLQVFNDTARYVDQGGGKRKGAFAIY 300
ISKSAGGIG+S+HNIRA+GSYI GTNG+SNGIVPML+VFNDTARYVDQGGGKRKGAFA+Y
Sbjct: 241 ISKSAGGIGVSVHNIRATGSYIRGTNGTSNGIVPMLRVFNDTARYVDQGGGKRKGAFAVY 300
Query: 301 LEPWHADIFEFLDLRKNQGKEECRARDLFYALWVPDLFMERVRDDGKWSLFCPSDASGLA 360
LEPWHAD++EFL+LRKN GKEE RARDLFYALW+PDLFMERV+++G+WSLFCP++A GLA
Sbjct: 301 LEPWHADVYEFLELRKNHGKEEHRARDLFYALWLPDLFMERVQNNGQWSLFCPNEAPGLA 360
Query: 361 DSWGIEFEHLYSQYEEEGRAKMVISARKLWFEILNSQIETGTPYMLFKDSCNRKSNQQNL 420
D WG EFE LY++YE EG+AK V+ A++LW+EIL SQ+ETGTPYMLFKDSCNRKSNQQNL
Sbjct: 361 DCWGAEFETLYTKYEREGKAKKVVQAQQLWYEILTSQVETGTPYMLFKDSCNRKSNQQNL 420
Query: 421 GTIKSSNLCTEIVEFSSPEETAVCNLASIALPRYVREKGVPVQSNVSKLVGSRDSKNRLF 480
GTIKSSNLCTEI+E++SP ETAVCNLASIALPR+VREKGVP+ S+ KL GS DSKNR F
Sbjct: 421 GTIKSSNLCTEIIEYTSPTETAVCNLASIALPRFVREKGVPLDSHPPKLAGSLDSKNRYF 480
Query: 481 DFERLAEVTKIITENLNKIIDVNHYPIETTRRSNLRHRPIGIGIQGLADTFILLGLPFES 540
DFE+LAEVT +T NLNKIIDVN+YP+ET + SN+RHRPIGIG+QGLAD FILLG+PF+S
Sbjct: 481 DFEKLAEVTATVTVNLNKIIDVNYYPVETAKTSNMRHRPIGIGVQGLADAFILLGMPFDS 540
Query: 541 PEAQQLNKDIFETIYYHALKASAELAVKDGPYETYFGSPMSKGILQVDMWNITPSDRWDW 600
PEAQQLNKDIFETIYYHALKAS ELA + GPYETY GSP+SKGILQ DMWN+ PSDRWDW
Sbjct: 541 PEAQQLNKDIFETIYYHALKASTELAARLGPYETYAGSPVSKGILQPDMWNVIPSDRWDW 600
Query: 601 SSLREMISKNGVRNSLLVAPMPTASTSQILGNNECFEPYTSNIYTRRVLSGEFIVVNKHL 660
+ LR+MISKNGVRNSLLVAPMPTASTSQILGNNECFEPYTSNIY+RRVLSGEF+VVNKHL
Sbjct: 601 AVLRDMISKNGVRNSLLVAPMPTASTSQILGNNECFEPYTSNIYSRRVLSGEFVVVNKHL 660
Query: 661 LKDLTELGLWSHALKTKIIYENGSVSKISEIPEELKAIYKTVWEIKQKTLVDMAADRGCY 720
L DLT++GLW+ LK K+I ENGS+ ++EIP++LKAIY+TVWEIKQ+T+VDMAADRGCY
Sbjct: 661 LHDLTDMGLWTPTLKNKLINENGSIVNVAEIPDDLKAIYRTVWEIKQRTVVDMAADRGCY 720
Query: 721 IDQSQSLNIHMEQPDHGKLTSLHFYAWSKGMKTGMYYLRTRAAADAIKFTVDTSVLNNEK 780
IDQSQSLNIHM++P+ KLTSLHFY W KG+KTGMYYLR+RAAADAIKFTVDT++L EK
Sbjct: 721 IDQSQSLNIHMDKPNFAKLTSLHFYTWKKGLKTGMYYLRSRAAADAIKFTVDTAMLK-EK 779
Query: 781 ANRADNDVEAN-------LAQVVCSLKNQEECMACGS 810
+ A+ D E LAQ+VCSL N EEC+ACGS
Sbjct: 780 PSVAEGDKEVEEEDNETKLAQMVCSLTNPEECLACGS 816
>RGD|1592569 [details] [associations]
symbol:Rrm1 "ribonucleotide reductase M1" species:10116 "Rattus
norvegicus" [GO:0000278 "mitotic cell cycle" evidence=IEP]
[GO:0003674 "molecular_function" evidence=ND] [GO:0005635 "nuclear
envelope" evidence=IDA] [GO:0005737 "cytoplasm" evidence=IDA]
[GO:0006206 "pyrimidine nucleobase metabolic process" evidence=IEP]
[GO:0008584 "male gonad development" evidence=IEP] [GO:0010212
"response to ionizing radiation" evidence=IEP] [GO:0021846 "cell
proliferation in forebrain" evidence=IEP] [GO:0042995 "cell
projection" evidence=IDA] [GO:0043025 "neuronal cell body"
evidence=IDA] [GO:0060041 "retina development in camera-type eye"
evidence=IEP] InterPro:IPR000788 InterPro:IPR008926
InterPro:IPR013346 InterPro:IPR013509 Pfam:PF00317 Pfam:PF02867
PRINTS:PR01183 PROSITE:PS00089 UniPathway:UPA00326 Pfam:PF03477
RGD:1592569 GO:GO:0005524 GO:GO:0005737 GO:GO:0005635 GO:GO:0006260
GO:GO:0043025 GO:GO:0006206 EMBL:CH473956 GO:GO:0010212
GO:GO:0008584 GO:GO:0060041 GO:GO:0042995 GO:GO:0021846
GO:GO:0000278 KO:K10807 InterPro:IPR005144 PROSITE:PS51161
GO:GO:0005971 GO:GO:0004748 SUPFAM:SSF48168 TIGRFAMs:TIGR02506
CTD:6240 HOVERGEN:HBG003447 EMBL:BC085906 IPI:IPI00361151
RefSeq:NP_001013254.1 UniGene:Rn.162454 SMR:Q5U2Q5 GeneID:685579
KEGG:rno:685579 ChEMBL:CHEMBL5130 NextBio:729994
Genevestigator:Q5U2Q5 Uniprot:Q5U2Q5
Length = 792
Score = 1620 (575.3 bits), Expect = 3.7e-293, Sum P(2) = 3.7e-293
Identities = 300/455 (65%), Positives = 368/455 (80%)
Query: 1 MYVIKRDGRKEPVRFDKITARLKKLSYGLSKEHCDPVLVAQKVCAGVYKGVTTTQLDELA 60
M+VIKRDGR+E V FDKIT+R++KL YGL+ + DP + KV G+Y GVTT +LD LA
Sbjct: 1 MHVIKRDGRQERVMFDKITSRIQKLCYGLNMDFVDPAQITMKVIQGLYSGVTTVELDTLA 60
Query: 61 AETAAAMTVNHPDYALLAGRVAVSNLHKITKNSFSETIKDMYNYYNKRSGKKASLVADDV 120
AETAA +T HPDYA+LA R+AVSNLHK TK FS+ ++D+YNY N +G+ + +VA
Sbjct: 61 AETAATLTTKHPDYAILAARIAVSNLHKETKKVFSDVMEDLYNYINPHNGRHSPMVASST 120
Query: 121 YEIIMKNAACLDGAIIXXXXXXXXXXXXKTLERSYLLKMDSRVVERPQHMLMRVSVGIHK 180
EI+M + L+ AII KTLERSYLLK++ +V ERPQHMLMRVSVGIHK
Sbjct: 121 LEIVMAHKDRLNSAIIYDRDFSYNYFGFKTLERSYLLKINGKVAERPQHMLMRVSVGIHK 180
Query: 181 DDTDSALKTYHLMSQHWFTHATPTLFNAGTPQPQLSSCFLLCMKDDSIEGIYDTLKKCAI 240
+D D+A++TY+L+S+ WFTHA+PTLFNAGT +PQLSSCFLL MKDDSIEGIYDTLK+CA+
Sbjct: 181 EDIDAAIETYNLLSEKWFTHASPTLFNAGTNRPQLSSCFLLSMKDDSIEGIYDTLKQCAL 240
Query: 241 ISKSAGGIGLSIHNIRASGSYIHGTNGSSNGIVPMLQVFNDTARYVDQGGGKRKGAFAIY 300
ISKSAGGIG+++ IRA+GSYI GTNG+SNG+VPML+V+N+TARYVDQGG KR GAFAIY
Sbjct: 241 ISKSAGGIGVAVSCIRATGSYIAGTNGNSNGLVPMLRVYNNTARYVDQGGNKRPGAFAIY 300
Query: 301 LEPWHADIFEFLDLRKNQGKEECRARDLFYALWVPDLFMERVRDDGKWSLFCPSDASGLA 360
LEPWH DIFEFLDL+KN GKEE RARDLF+ALW+PDLFM+RV + WSL CP++ GL
Sbjct: 301 LEPWHLDIFEFLDLKKNTGKEEQRARDLFFALWIPDLFMKRVETNQDWSLMCPNECPGLD 360
Query: 361 DSWGIEFEHLYSQYEEEGRAKMVISARKLWFEILNSQIETGTPYMLFKDSCNRKSNQQNL 420
+ WG EFE LY YE++GR + V+ A++LW+ I+ SQ ETGTPYML+KDSCNRKSNQQNL
Sbjct: 361 EVWGEEFEKLYESYEKQGRVRKVVKAQQLWYAIIESQTETGTPYMLYKDSCNRKSNQQNL 420
Query: 421 GTIKSSNLCTEIVEFSSPEETAVCNLASIALPRYV 455
GTIK SNLCTEIVE++S +E AVCNLAS+AL YV
Sbjct: 421 GTIKCSNLCTEIVEYTSKDEVAVCNLASLALNMYV 455
Score = 1219 (434.2 bits), Expect = 3.7e-293, Sum P(2) = 3.7e-293
Identities = 231/371 (62%), Positives = 285/371 (76%)
Query: 441 TAVCNLASIALPRYVREKGVPVQSNVSKLVGSRDSKNRLFDFERLAEVTKIITENLNKII 500
T C+ + Y + V V + S + + +DFE+LAEVTK+I NLNKII
Sbjct: 422 TIKCSNLCTEIVEYTSKDEVAVCNLASLALNMYVTPEHTYDFEKLAEVTKVIVRNLNKII 481
Query: 501 DVNHYPIETTRRSNLRHRPIGIGIQGLADTFILLGLPFESPEAQQLNKDIFETIYYHALK 560
D+N+YPI SN RHRPIGIG+QGLAD FIL+ PFESPEAQ LNK IFETIYY AL+
Sbjct: 482 DINYYPIPEAHLSNKRHRPIGIGVQGLADAFILMRYPFESPEAQLLNKQIFETIYYGALE 541
Query: 561 ASAELAVKDGPYETYFGSPMSKGILQVDMWNITPSDRWDWSSLREMISKNGVRNSLLVAP 620
AS +LA + GPYETY GSP+SKGILQ DMWN+TP+D WDW L+E I+K G+RNSLL+AP
Sbjct: 542 ASCDLAKEYGPYETYEGSPVSKGILQYDMWNVTPTDLWDWKLLKEKIAKYGIRNSLLIAP 601
Query: 621 MPTASTSQILGNNECFEPYTSNIYTRRVLSGEFIVVNKHLLKDLTELGLWSHALKTKIIY 680
MPTAST+QILGNNE EPYTSNIYTRRVLSGEF +VN HLLKDLTE GLW+ +K +II
Sbjct: 602 MPTASTAQILGNNESIEPYTSNIYTRRVLSGEFQIVNPHLLKDLTERGLWNEEMKNQIIA 661
Query: 681 ENGSVSKISEIPEELKAIYKTVWEIKQKTLVDMAADRGCYIDQSQSLNIHMEQPDHGKLT 740
NGS+ I EIPE+LK +YKTVWEI QKT++ MAA+RG +IDQSQSLNIH+ +P++GKLT
Sbjct: 662 CNGSIQSIPEIPEDLKQLYKTVWEISQKTVLKMAAERGAFIDQSQSLNIHIAEPNYGKLT 721
Query: 741 SLHFYAWSKGMKTGMYYLRTRAAADAIKFTVDTSVLNN-EKANRADNDVEANLAQVVCSL 799
S+HFY W +G+KTGMYYLRTR AA+ I+FT++ L + EKA + + + E N A +VCSL
Sbjct: 722 SMHFYGWKQGLKTGMYYLRTRPAANPIQFTLNKEKLKDKEKALKEEEEKERNTAAMVCSL 781
Query: 800 KNQEECMACGS 810
+N+EEC+ CGS
Sbjct: 782 ENREECLMCGS 792
>MGI|MGI:98180 [details] [associations]
symbol:Rrm1 "ribonucleotide reductase M1" species:10090 "Mus
musculus" [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0003824 "catalytic activity" evidence=IEA] [GO:0004748
"ribonucleoside-diphosphate reductase activity, thioredoxin
disulfide as acceptor" evidence=IDA] [GO:0005515 "protein binding"
evidence=IPI] [GO:0005524 "ATP binding" evidence=IEA] [GO:0005737
"cytoplasm" evidence=IEA] [GO:0005971 "ribonucleoside-diphosphate
reductase complex" evidence=IEA] [GO:0006260 "DNA replication"
evidence=IEA] [GO:0008152 "metabolic process" evidence=IEA]
[GO:0009263 "deoxyribonucleotide biosynthetic process"
evidence=IDA] [GO:0016491 "oxidoreductase activity" evidence=IEA]
[GO:0017076 "purine nucleotide binding" evidence=IDA] [GO:0051259
"protein oligomerization" evidence=IPI] [GO:0051290 "protein
heterotetramerization" evidence=IPI] [GO:0055114
"oxidation-reduction process" evidence=IEA] InterPro:IPR000788
InterPro:IPR008926 InterPro:IPR013346 InterPro:IPR013509
Pfam:PF00317 Pfam:PF02867 PRINTS:PR01183 PROSITE:PS00089
UniPathway:UPA00326 MGI:MGI:98180 Pfam:PF03477 GO:GO:0005524
GO:GO:0006260 EMBL:CH466531 GO:GO:0051290 GO:GO:0017076
GO:GO:0009263 KO:K10807 InterPro:IPR005144 PROSITE:PS51161
eggNOG:COG0209 GO:GO:0005971 GO:GO:0004748 SUPFAM:SSF48168
HOGENOM:HOG000057035 TIGRFAMs:TIGR02506
GeneTree:ENSGT00390000001372 OMA:YKYGVKT CTD:6240
HOVERGEN:HBG003447 OrthoDB:EOG4ZW59G EMBL:K02927 EMBL:AK088043
EMBL:AK137075 EMBL:AK168586 EMBL:BC016450 IPI:IPI00315127
PIR:A24050 RefSeq:NP_033129.2 UniGene:Mm.197486 UniGene:Mm.415177
ProteinModelPortal:P07742 SMR:P07742 STRING:P07742
PhosphoSite:P07742 PaxDb:P07742 PRIDE:P07742
Ensembl:ENSMUST00000033283 GeneID:20133 KEGG:mmu:20133
InParanoid:Q91YM8 BindingDB:P07742 ChEMBL:CHEMBL3739 NextBio:297643
Bgee:P07742 CleanEx:MM_RRM1 Genevestigator:P07742
GermOnline:ENSMUSG00000030978 Uniprot:P07742
Length = 792
Score = 1622 (576.0 bits), Expect = 6.0e-293, Sum P(2) = 6.0e-293
Identities = 300/455 (65%), Positives = 368/455 (80%)
Query: 1 MYVIKRDGRKEPVRFDKITARLKKLSYGLSKEHCDPVLVAQKVCAGVYKGVTTTQLDELA 60
M+VIKRDGR+E V FDKIT+R++KL YGL+ + DP + KV G+Y GVTT +LD LA
Sbjct: 1 MHVIKRDGRQERVMFDKITSRIQKLCYGLNMDFVDPAQITMKVIQGLYSGVTTVELDTLA 60
Query: 61 AETAAAMTVNHPDYALLAGRVAVSNLHKITKNSFSETIKDMYNYYNKRSGKKASLVADDV 120
AETAA +T HPDYA+LA R+AVSNLHK TK FS+ ++D+YNY N +G+ + +VA
Sbjct: 61 AETAATLTTKHPDYAILAARIAVSNLHKETKKVFSDVMEDLYNYINPHNGRHSPMVASST 120
Query: 121 YEIIMKNAACLDGAIIXXXXXXXXXXXXKTLERSYLLKMDSRVVERPQHMLMRVSVGIHK 180
+I+M N L+ AII KTLERSYLLK++ +V ERPQHMLMRVSVGIHK
Sbjct: 121 LDIVMANKDRLNSAIIYDRDFSYNYFGFKTLERSYLLKINGKVAERPQHMLMRVSVGIHK 180
Query: 181 DDTDSALKTYHLMSQHWFTHATPTLFNAGTPQPQLSSCFLLCMKDDSIEGIYDTLKKCAI 240
+D D+A++TY+L+S+ WFTHA+PTLFNAGT +PQLSSCFLL MKDDSIEGIYDTLK+CA+
Sbjct: 181 EDIDAAIETYNLLSEKWFTHASPTLFNAGTNRPQLSSCFLLSMKDDSIEGIYDTLKQCAL 240
Query: 241 ISKSAGGIGLSIHNIRASGSYIHGTNGSSNGIVPMLQVFNDTARYVDQGGGKRKGAFAIY 300
ISKSAGGIG+++ IRA+GSYI GTNG+SNG+VPML+V+N+TARYVDQGG KR GAFAIY
Sbjct: 241 ISKSAGGIGVAVSCIRATGSYIAGTNGNSNGLVPMLRVYNNTARYVDQGGNKRPGAFAIY 300
Query: 301 LEPWHADIFEFLDLRKNQGKEECRARDLFYALWVPDLFMERVRDDGKWSLFCPSDASGLA 360
LEPWH DIFEFLDL+KN GKEE RARDLF+ALW+PDLFM+RV + WSL CP++ GL
Sbjct: 301 LEPWHLDIFEFLDLKKNTGKEEQRARDLFFALWIPDLFMKRVETNQDWSLMCPNECPGLD 360
Query: 361 DSWGIEFEHLYSQYEEEGRAKMVISARKLWFEILNSQIETGTPYMLFKDSCNRKSNQQNL 420
+ WG EFE LY YE++GR + V+ A++LW+ I+ SQ ETGTPYML+KDSCNRKSNQQNL
Sbjct: 361 EVWGEEFEKLYESYEKQGRVRKVVKAQQLWYAIIESQTETGTPYMLYKDSCNRKSNQQNL 420
Query: 421 GTIKSSNLCTEIVEFSSPEETAVCNLASIALPRYV 455
GTIK SNLCTEIVE++S +E AVCNLAS+AL YV
Sbjct: 421 GTIKCSNLCTEIVEYTSKDEVAVCNLASLALNMYV 455
Score = 1215 (432.8 bits), Expect = 6.0e-293, Sum P(2) = 6.0e-293
Identities = 230/371 (61%), Positives = 284/371 (76%)
Query: 441 TAVCNLASIALPRYVREKGVPVQSNVSKLVGSRDSKNRLFDFERLAEVTKIITENLNKII 500
T C+ + Y + V V + S + + +DFE+LAEVTK+I NLNKII
Sbjct: 422 TIKCSNLCTEIVEYTSKDEVAVCNLASLALNMYVTPEHTYDFEKLAEVTKVIVRNLNKII 481
Query: 501 DVNHYPIETTRRSNLRHRPIGIGIQGLADTFILLGLPFESPEAQQLNKDIFETIYYHALK 560
D+N+YPI SN RHRPIGIG+QGLAD FIL+ PFESPEAQ LNK IFETIYY AL+
Sbjct: 482 DINYYPIPEAHLSNKRHRPIGIGVQGLADAFILMRYPFESPEAQLLNKQIFETIYYGALE 541
Query: 561 ASAELAVKDGPYETYFGSPMSKGILQVDMWNITPSDRWDWSSLREMISKNGVRNSLLVAP 620
AS ELA + GPYETY GSP+SKGILQ DMWN+ P+D WDW L+E I+K G+RNSLL+AP
Sbjct: 542 ASCELAKEYGPYETYEGSPVSKGILQYDMWNVAPTDLWDWKPLKEKIAKYGIRNSLLIAP 601
Query: 621 MPTASTSQILGNNECFEPYTSNIYTRRVLSGEFIVVNKHLLKDLTELGLWSHALKTKIIY 680
MPTAST+QILGNNE EPYTSNIYTRRVLSGEF +VN HLLKDLTE GLW+ +K +II
Sbjct: 602 MPTASTAQILGNNESIEPYTSNIYTRRVLSGEFQIVNPHLLKDLTERGLWNEEMKNQIIA 661
Query: 681 ENGSVSKISEIPEELKAIYKTVWEIKQKTLVDMAADRGCYIDQSQSLNIHMEQPDHGKLT 740
NGS+ I EIP++LK +YKTVWEI QKT++ MAA+RG +IDQSQSLNIH+ +P++GKLT
Sbjct: 662 CNGSIQSIPEIPDDLKQLYKTVWEISQKTVLKMAAERGAFIDQSQSLNIHIAEPNYGKLT 721
Query: 741 SLHFYAWSKGMKTGMYYLRTRAAADAIKFTVDTSVLNN-EKANRADNDVEANLAQVVCSL 799
S+HFY W +G+KTGMYYLRTR AA+ I+FT++ L + EKA + + + E N A +VCSL
Sbjct: 722 SMHFYGWKQGLKTGMYYLRTRPAANPIQFTLNKEKLKDKEKALKEEEEKERNTAAMVCSL 781
Query: 800 KNQEECMACGS 810
+N+EEC+ CGS
Sbjct: 782 ENREECLMCGS 792
>UNIPROTKB|P23921 [details] [associations]
symbol:RRM1 "Ribonucleoside-diphosphate reductase large
subunit" species:9606 "Homo sapiens" [GO:0005524 "ATP binding"
evidence=IEA] [GO:0051290 "protein heterotetramerization"
evidence=IEA] [GO:0005971 "ribonucleoside-diphosphate reductase
complex" evidence=NAS] [GO:0006260 "DNA replication"
evidence=IEA;NAS] [GO:0004748 "ribonucleoside-diphosphate reductase
activity, thioredoxin disulfide as acceptor" evidence=ISS;NAS]
[GO:0009263 "deoxyribonucleotide biosynthetic process"
evidence=ISS] [GO:0005654 "nucleoplasm" evidence=TAS] [GO:0005829
"cytosol" evidence=TAS] [GO:0015949 "nucleobase-containing small
molecule interconversion" evidence=TAS] [GO:0044281 "small molecule
metabolic process" evidence=TAS] [GO:0055086 "nucleobase-containing
small molecule metabolic process" evidence=TAS] [GO:0005515
"protein binding" evidence=IPI] Reactome:REACT_111217
InterPro:IPR000788 InterPro:IPR008926 InterPro:IPR013346
InterPro:IPR013509 Pfam:PF00317 Pfam:PF02867 PRINTS:PR01183
PROSITE:PS00089 UniPathway:UPA00326 Pfam:PF03477 GO:GO:0005829
GO:GO:0005524 GO:GO:0005654 GO:GO:0006260 DrugBank:DB01073
GO:GO:0051290 GO:GO:0015949 DrugBank:DB00441 DrugBank:DB00631
GO:GO:0009263 KO:K10807 InterPro:IPR005144 PROSITE:PS51161
eggNOG:COG0209 GO:GO:0005971 GO:GO:0004748 SUPFAM:SSF48168
HOGENOM:HOG000057035 OMA:PQARNSN TIGRFAMs:TIGR02506 CTD:6240
HOVERGEN:HBG003447 OrthoDB:EOG4ZW59G EMBL:X59543 EMBL:X59617
EMBL:AF107045 EMBL:BC006498 EMBL:L10342 IPI:IPI00013871 PIR:S16680
RefSeq:NP_001024.1 UniGene:Hs.445705 PDB:2WGH PDB:3HNC PDB:3HND
PDB:3HNE PDB:3HNF PDBsum:2WGH PDBsum:3HNC PDBsum:3HND PDBsum:3HNE
PDBsum:3HNF ProteinModelPortal:P23921 SMR:P23921 DIP:DIP-24233N
IntAct:P23921 MINT:MINT-1406473 STRING:P23921 PhosphoSite:P23921
DMDM:132608 PaxDb:P23921 PeptideAtlas:P23921 PRIDE:P23921
DNASU:6240 Ensembl:ENST00000300738 GeneID:6240 KEGG:hsa:6240
UCSC:uc001lyw.4 GeneCards:GC11P004115 HGNC:HGNC:10451 HPA:CAB022093
MIM:180410 neXtProt:NX_P23921 PharmGKB:PA298 InParanoid:P23921
PhylomeDB:P23921 BindingDB:P23921 ChEMBL:CHEMBL1830 ChiTaRS:RRM1
DrugBank:DB01005 EvolutionaryTrace:P23921 GenomeRNAi:6240
NextBio:24233 ArrayExpress:P23921 Bgee:P23921 CleanEx:HS_RRM1
Genevestigator:P23921 GermOnline:ENSG00000167325 Uniprot:P23921
Length = 792
Score = 1623 (576.4 bits), Expect = 2.9e-291, Sum P(2) = 2.9e-291
Identities = 300/455 (65%), Positives = 369/455 (81%)
Query: 1 MYVIKRDGRKEPVRFDKITARLKKLSYGLSKEHCDPVLVAQKVCAGVYKGVTTTQLDELA 60
M+VIKRDGR+E V FDKIT+R++KL YGL+ + DP + KV G+Y GVTT +LD LA
Sbjct: 1 MHVIKRDGRQERVMFDKITSRIQKLCYGLNMDFVDPAQITMKVIQGLYSGVTTVELDTLA 60
Query: 61 AETAAAMTVNHPDYALLAGRVAVSNLHKITKNSFSETIKDMYNYYNKRSGKKASLVADDV 120
AETAA +T HPDYA+LA R+AVSNLHK TK FS+ ++D+YNY N +GK + +VA
Sbjct: 61 AETAATLTTKHPDYAILAARIAVSNLHKETKKVFSDVMEDLYNYINPHNGKHSPMVAKST 120
Query: 121 YEIIMKNAACLDGAIIXXXXXXXXXXXXKTLERSYLLKMDSRVVERPQHMLMRVSVGIHK 180
+I++ N L+ AII KTLERSYLLK++ +V ERPQHMLMRVSVGIHK
Sbjct: 121 LDIVLANKDRLNSAIIYDRDFSYNYFGFKTLERSYLLKINGKVAERPQHMLMRVSVGIHK 180
Query: 181 DDTDSALKTYHLMSQHWFTHATPTLFNAGTPQPQLSSCFLLCMKDDSIEGIYDTLKKCAI 240
+D D+A++TY+L+S+ WFTHA+PTLFNAGT +PQLSSCFLL MKDDSIEGIYDTLK+CA+
Sbjct: 181 EDIDAAIETYNLLSERWFTHASPTLFNAGTNRPQLSSCFLLSMKDDSIEGIYDTLKQCAL 240
Query: 241 ISKSAGGIGLSIHNIRASGSYIHGTNGSSNGIVPMLQVFNDTARYVDQGGGKRKGAFAIY 300
ISKSAGGIG+++ IRA+GSYI GTNG+SNG+VPML+V+N+TARYVDQGG KR GAFAIY
Sbjct: 241 ISKSAGGIGVAVSCIRATGSYIAGTNGNSNGLVPMLRVYNNTARYVDQGGNKRPGAFAIY 300
Query: 301 LEPWHADIFEFLDLRKNQGKEECRARDLFYALWVPDLFMERVRDDGKWSLFCPSDASGLA 360
LEPWH DIFEFLDL+KN GKEE RARDLF+ALW+PDLFM+RV + WSL CP++ GL
Sbjct: 301 LEPWHLDIFEFLDLKKNTGKEEQRARDLFFALWIPDLFMKRVETNQDWSLMCPNECPGLD 360
Query: 361 DSWGIEFEHLYSQYEEEGRAKMVISARKLWFEILNSQIETGTPYMLFKDSCNRKSNQQNL 420
+ WG EFE LY+ YE++GR + V+ A++LW+ I+ SQ ETGTPYML+KDSCNRKSNQQNL
Sbjct: 361 EVWGEEFEKLYASYEKQGRVRKVVKAQQLWYAIIESQTETGTPYMLYKDSCNRKSNQQNL 420
Query: 421 GTIKSSNLCTEIVEFSSPEETAVCNLASIALPRYV 455
GTIK SNLCTEIVE++S +E AVCNLAS+AL YV
Sbjct: 421 GTIKCSNLCTEIVEYTSKDEVAVCNLASLALNMYV 455
Score = 1198 (426.8 bits), Expect = 2.9e-291, Sum P(2) = 2.9e-291
Identities = 224/371 (60%), Positives = 283/371 (76%)
Query: 441 TAVCNLASIALPRYVREKGVPVQSNVSKLVGSRDSKNRLFDFERLAEVTKIITENLNKII 500
T C+ + Y + V V + S + + +DF++LAEVTK++ NLNKII
Sbjct: 422 TIKCSNLCTEIVEYTSKDEVAVCNLASLALNMYVTSEHTYDFKKLAEVTKVVVRNLNKII 481
Query: 501 DVNHYPIETTRRSNLRHRPIGIGIQGLADTFILLGLPFESPEAQQLNKDIFETIYYHALK 560
D+N+YP+ SN RHRPIGIG+QGLAD FIL+ PFES EAQ LNK IFETIYY AL+
Sbjct: 482 DINYYPVPEACLSNKRHRPIGIGVQGLADAFILMRYPFESAEAQLLNKQIFETIYYGALE 541
Query: 561 ASAELAVKDGPYETYFGSPMSKGILQVDMWNITPSDRWDWSSLREMISKNGVRNSLLVAP 620
AS +LA + GPYETY GSP+SKGILQ DMWN+TP+D WDW L+E I+K G+RNSLL+AP
Sbjct: 542 ASCDLAKEQGPYETYEGSPVSKGILQYDMWNVTPTDLWDWKVLKEKIAKYGIRNSLLIAP 601
Query: 621 MPTASTSQILGNNECFEPYTSNIYTRRVLSGEFIVVNKHLLKDLTELGLWSHALKTKIIY 680
MPTAST+QILGNNE EPYTSNIYTRRVLSGEF +VN HLLKDLTE GLW +K +II
Sbjct: 602 MPTASTAQILGNNESIEPYTSNIYTRRVLSGEFQIVNPHLLKDLTERGLWHEEMKNQIIA 661
Query: 681 ENGSVSKISEIPEELKAIYKTVWEIKQKTLVDMAADRGCYIDQSQSLNIHMEQPDHGKLT 740
NGS+ I EIP++LK +YKTVWEI QKT++ MAA+RG +IDQSQSLNIH+ +P++GKLT
Sbjct: 662 CNGSIQSIPEIPDDLKQLYKTVWEISQKTVLKMAAERGAFIDQSQSLNIHIAEPNYGKLT 721
Query: 741 SLHFYAWSKGMKTGMYYLRTRAAADAIKFTVDTSVLNN-EKANRADNDVEANLAQVVCSL 799
S+HFY W +G+KTGMYYLRTR AA+ I+FT++ L + EK ++ + + E N A +VCSL
Sbjct: 722 SMHFYGWKQGLKTGMYYLRTRPAANPIQFTLNKEKLKDKEKVSKEEEEKERNTAAMVCSL 781
Query: 800 KNQEECMACGS 810
+N++EC+ CGS
Sbjct: 782 ENRDECLMCGS 792
>UNIPROTKB|F1MSF1 [details] [associations]
symbol:RRM1 "Ribonucleoside-diphosphate reductase"
species:9913 "Bos taurus" [GO:0006260 "DNA replication"
evidence=IEA] [GO:0051290 "protein heterotetramerization"
evidence=IEA] [GO:0009263 "deoxyribonucleotide biosynthetic
process" evidence=IEA] [GO:0004748 "ribonucleoside-diphosphate
reductase activity, thioredoxin disulfide as acceptor"
evidence=IEA] [GO:0005971 "ribonucleoside-diphosphate reductase
complex" evidence=IEA] [GO:0005524 "ATP binding" evidence=IEA]
InterPro:IPR000788 InterPro:IPR008926 InterPro:IPR013346
InterPro:IPR013509 Pfam:PF00317 Pfam:PF02867 PRINTS:PR01183
PROSITE:PS00089 UniPathway:UPA00326 Pfam:PF03477 GO:GO:0005524
GO:GO:0006260 GO:GO:0051290 GO:GO:0009263 InterPro:IPR005144
PROSITE:PS51161 GO:GO:0005971 GO:GO:0004748 SUPFAM:SSF48168
OMA:PQARNSN TIGRFAMs:TIGR02506 GeneTree:ENSGT00390000001372
EMBL:DAAA02040985 EMBL:DAAA02040986 IPI:IPI00884866
UniGene:Bt.12465 Ensembl:ENSBTAT00000017428 Uniprot:F1MSF1
Length = 791
Score = 1622 (576.0 bits), Expect = 1.0e-290, Sum P(2) = 1.0e-290
Identities = 301/455 (66%), Positives = 369/455 (81%)
Query: 1 MYVIKRDGRKEPVRFDKITARLKKLSYGLSKEHCDPVLVAQKVCAGVYKGVTTTQLDELA 60
M+VIKRDGR+E V FDKIT+R++KL YGL+ + DP + KV G+Y GVTT +LD LA
Sbjct: 1 MHVIKRDGRQERVMFDKITSRIQKLCYGLNMDFVDPAQITMKVIQGLYSGVTTVELDTLA 60
Query: 61 AETAAAMTVNHPDYALLAGRVAVSNLHKITKNSFSETIKDMYNYYNKRSGKKASLVADDV 120
AETAA +T HPDYA+LA R+AVSNLHK TK FS+ ++D++NY N +GK + +VA
Sbjct: 61 AETAATLTTKHPDYAILAARIAVSNLHKETKKVFSDVMEDLFNYINPHNGKHSPMVAKST 120
Query: 121 YEIIMKNAACLDGAIIXXXXXXXXXXXXKTLERSYLLKMDSRVVERPQHMLMRVSVGIHK 180
+I++ N L+ AII KTLERSYLLK++ +V ERPQHMLMRVSVGIHK
Sbjct: 121 LDIVLANKDRLNSAIIYDRDFSYNYFGFKTLERSYLLKINGKVAERPQHMLMRVSVGIHK 180
Query: 181 DDTDSALKTYHLMSQHWFTHATPTLFNAGTPQPQLSSCFLLCMKDDSIEGIYDTLKKCAI 240
+D D+A++TY+L+S+ WFTHA+PTLFNAGT +PQLSSCFLL MKDDSIEGIYDTLK+CA+
Sbjct: 181 EDIDAAIETYNLLSEKWFTHASPTLFNAGTNRPQLSSCFLLSMKDDSIEGIYDTLKQCAL 240
Query: 241 ISKSAGGIGLSIHNIRASGSYIHGTNGSSNGIVPMLQVFNDTARYVDQGGGKRKGAFAIY 300
ISKSAGGIG+++ IRA+GSYI GTNG+SNG+VPML+V+N+TARYVDQGG KR GAFAIY
Sbjct: 241 ISKSAGGIGVAVSCIRATGSYIAGTNGNSNGLVPMLRVYNNTARYVDQGGNKRPGAFAIY 300
Query: 301 LEPWHADIFEFLDLRKNQGKEECRARDLFYALWVPDLFMERVRDDGKWSLFCPSDASGLA 360
LEPWH DIFEFLDL+KN GKEE RARDLF+ALW+PDLFM+RV + WSL CP++ GL
Sbjct: 301 LEPWHLDIFEFLDLKKNTGKEEQRARDLFFALWIPDLFMKRVETNQDWSLMCPNECPGLD 360
Query: 361 DSWGIEFEHLYSQYEEEGRAKMVISARKLWFEILNSQIETGTPYMLFKDSCNRKSNQQNL 420
+ WG EFE LY +YE+EGR + VI A++LW+ I+ SQ ETGTPYML+KDSCNRKSNQQNL
Sbjct: 361 EVWGEEFEKLYERYEKEGRVRKVIKAQQLWYAIIESQTETGTPYMLYKDSCNRKSNQQNL 420
Query: 421 GTIKSSNLCTEIVEFSSPEETAVCNLASIALPRYV 455
GTIK SNLCTEIVE++S +E AVCNLAS+AL YV
Sbjct: 421 GTIKCSNLCTEIVEYTSKDEVAVCNLASLALNMYV 455
Score = 1194 (425.4 bits), Expect = 1.0e-290, Sum P(2) = 1.0e-290
Identities = 224/370 (60%), Positives = 282/370 (76%)
Query: 441 TAVCNLASIALPRYVREKGVPVQSNVSKLVGSRDSKNRLFDFERLAEVTKIITENLNKII 500
T C+ + Y + V V + S + + +DF +LAEVTK+I NLNKII
Sbjct: 422 TIKCSNLCTEIVEYTSKDEVAVCNLASLALNMYVTSEHTYDFTKLAEVTKVIVRNLNKII 481
Query: 501 DVNHYPIETTRRSNLRHRPIGIGIQGLADTFILLGLPFESPEAQQLNKDIFETIYYHALK 560
D+N+YP+ SN HRPIGIG+QGLAD FIL+ PFESPEAQ LNK IFETIYY AL+
Sbjct: 482 DINYYPVPEASLSNKLHRPIGIGVQGLADAFILMRYPFESPEAQLLNKQIFETIYYGALE 541
Query: 561 ASAELAVKDGPYETYFGSPMSKGILQVDMWNITPSDRWDWSSLREMISKNGVRNSLLVAP 620
AS +LA + GPYETY GSP+SKGILQ DMWN+TP+D WDW+ L+E I+K GVRNSLL+AP
Sbjct: 542 ASCDLAKEYGPYETYEGSPVSKGILQYDMWNVTPTDLWDWNLLKEKIAKYGVRNSLLIAP 601
Query: 621 MPTASTSQILGNNECFEPYTSNIYTRRVLSGEFIVVNKHLLKDLTELGLWSHALKTKIIY 680
MPTAST+QILGNNE EPYTSNIYTRRVLSGEF +VN HLLKDLTE GLW+ +K +II
Sbjct: 602 MPTASTAQILGNNESIEPYTSNIYTRRVLSGEFQIVNPHLLKDLTERGLWNEEMKNQIIA 661
Query: 681 ENGSVSKISEIPEELKAIYKTVWEIKQKTLVDMAADRGCYIDQSQSLNIHMEQPDHGKLT 740
NGS+ I EIP++LK +YKTVWEI QKT++ MAA+RG +IDQSQSLNIH+ +P++GKLT
Sbjct: 662 CNGSIQSIPEIPDDLKQLYKTVWEISQKTVLKMAAERGAFIDQSQSLNIHIAEPNYGKLT 721
Query: 741 SLHFYAWSKGMKTGMYYLRTRAAADAIKFTVDTSVLNNEKANRADNDVEANLAQVVCSLK 800
S+HFY W +G+KTGMYYLRTR AA+ I+FT++ L +++ + + E N A +VCSL+
Sbjct: 722 SMHFYGWKQGLKTGMYYLRTRPAANPIQFTLNKEKLKDKEKVSKEEEKERNTAAMVCSLE 781
Query: 801 NQEECMACGS 810
N++EC+ CGS
Sbjct: 782 NRDECLMCGS 791
>UNIPROTKB|E2R8P1 [details] [associations]
symbol:RRM1 "Ribonucleoside-diphosphate reductase"
species:9615 "Canis lupus familiaris" [GO:0006260 "DNA replication"
evidence=IEA] [GO:0051290 "protein heterotetramerization"
evidence=IEA] [GO:0009263 "deoxyribonucleotide biosynthetic
process" evidence=IEA] [GO:0004748 "ribonucleoside-diphosphate
reductase activity, thioredoxin disulfide as acceptor"
evidence=IEA] [GO:0005971 "ribonucleoside-diphosphate reductase
complex" evidence=IEA] [GO:0005524 "ATP binding" evidence=IEA]
InterPro:IPR000788 InterPro:IPR008926 InterPro:IPR013346
InterPro:IPR013509 Pfam:PF00317 Pfam:PF02867 PRINTS:PR01183
PROSITE:PS00089 UniPathway:UPA00326 Pfam:PF03477 GO:GO:0005524
GO:GO:0006260 GO:GO:0051290 GO:GO:0009263 KO:K10807
InterPro:IPR005144 PROSITE:PS51161 GO:GO:0005971 GO:GO:0004748
SUPFAM:SSF48168 OMA:PQARNSN TIGRFAMs:TIGR02506
GeneTree:ENSGT00390000001372 CTD:6240 EMBL:AAEX03012836
RefSeq:XP_534027.2 Ensembl:ENSCAFT00000009652 GeneID:476823
KEGG:cfa:476823 NextBio:20852423 Uniprot:E2R8P1
Length = 792
Score = 1614 (573.2 bits), Expect = 1.0e-290, Sum P(2) = 1.0e-290
Identities = 298/455 (65%), Positives = 368/455 (80%)
Query: 1 MYVIKRDGRKEPVRFDKITARLKKLSYGLSKEHCDPVLVAQKVCAGVYKGVTTTQLDELA 60
M+VIKRDGR+E V FDKIT+R++KL YGL+ + DP + KV G+Y GVTT +LD LA
Sbjct: 1 MHVIKRDGRQERVMFDKITSRIQKLCYGLNMDFVDPAQITMKVIQGLYSGVTTVELDTLA 60
Query: 61 AETAAAMTVNHPDYALLAGRVAVSNLHKITKNSFSETIKDMYNYYNKRSGKKASLVADDV 120
AETAA +T HPDYA+LA R+AVSNLHK TK FS+ ++D+YNY N +G+ + +VA
Sbjct: 61 AETAATLTTKHPDYAILAARIAVSNLHKETKKVFSDVMEDLYNYINPHNGRHSPMVAKST 120
Query: 121 YEIIMKNAACLDGAIIXXXXXXXXXXXXKTLERSYLLKMDSRVVERPQHMLMRVSVGIHK 180
+I++ N L+ AII KTLERSYLLK++ +V ERPQHMLMRVSVGIH+
Sbjct: 121 LDIVLANKDRLNSAIIYDRDFSYNYFGFKTLERSYLLKINGKVAERPQHMLMRVSVGIHE 180
Query: 181 DDTDSALKTYHLMSQHWFTHATPTLFNAGTPQPQLSSCFLLCMKDDSIEGIYDTLKKCAI 240
+D D+A++TY+L+S+ WFTHA+PTLFNAGT +PQLSSCFLL MKDDSIEGIYDTLK+CA+
Sbjct: 181 EDIDAAIETYNLLSEKWFTHASPTLFNAGTNRPQLSSCFLLSMKDDSIEGIYDTLKQCAL 240
Query: 241 ISKSAGGIGLSIHNIRASGSYIHGTNGSSNGIVPMLQVFNDTARYVDQGGGKRKGAFAIY 300
ISKSAGGIG+++ IRA+GSYI GTNG+SNG+VPML+V+N+TARYVDQGG KR GAFAIY
Sbjct: 241 ISKSAGGIGVAVSCIRATGSYIAGTNGNSNGLVPMLRVYNNTARYVDQGGNKRPGAFAIY 300
Query: 301 LEPWHADIFEFLDLRKNQGKEECRARDLFYALWVPDLFMERVRDDGKWSLFCPSDASGLA 360
LEPWH DIFEFLDL+KN GKEE RARDLF+ALW+PDLFM+RV + WSL CP++ GL
Sbjct: 301 LEPWHLDIFEFLDLKKNTGKEEQRARDLFFALWIPDLFMKRVETNQDWSLMCPNECPGLD 360
Query: 361 DSWGIEFEHLYSQYEEEGRAKMVISARKLWFEILNSQIETGTPYMLFKDSCNRKSNQQNL 420
+ WG EFE LY YE++GR + V+ A++LW+ I+ SQ ETGTPYML+KDSCNRKSNQQNL
Sbjct: 361 EVWGEEFEKLYESYEKQGRVRKVVKAQQLWYAIIESQTETGTPYMLYKDSCNRKSNQQNL 420
Query: 421 GTIKSSNLCTEIVEFSSPEETAVCNLASIALPRYV 455
GTIK SNLCTEIVE++S +E AVCNLAS+AL YV
Sbjct: 421 GTIKCSNLCTEIVEYTSKDEVAVCNLASLALNMYV 455
Score = 1202 (428.2 bits), Expect = 1.0e-290, Sum P(2) = 1.0e-290
Identities = 226/371 (60%), Positives = 284/371 (76%)
Query: 441 TAVCNLASIALPRYVREKGVPVQSNVSKLVGSRDSKNRLFDFERLAEVTKIITENLNKII 500
T C+ + Y + V V + S + + +DF++LAEVTK+I NLNKII
Sbjct: 422 TIKCSNLCTEIVEYTSKDEVAVCNLASLALNMYVTSEHTYDFKKLAEVTKVIVRNLNKII 481
Query: 501 DVNHYPIETTRRSNLRHRPIGIGIQGLADTFILLGLPFESPEAQQLNKDIFETIYYHALK 560
D+N+YP+ SN RHRPIGIG+QGLAD FIL+ PFESPEAQ LNK IFETIYY AL+
Sbjct: 482 DINYYPVPEACLSNKRHRPIGIGVQGLADAFILMRYPFESPEAQLLNKQIFETIYYGALE 541
Query: 561 ASAELAVKDGPYETYFGSPMSKGILQVDMWNITPSDRWDWSSLREMISKNGVRNSLLVAP 620
AS +LA + GPYETY GSP+S+GILQ DMWN+TP++ WDW L+E I+K GVRNSLL+AP
Sbjct: 542 ASCDLAKEHGPYETYEGSPVSRGILQYDMWNVTPTELWDWKLLKEKIAKYGVRNSLLIAP 601
Query: 621 MPTASTSQILGNNECFEPYTSNIYTRRVLSGEFIVVNKHLLKDLTELGLWSHALKTKIIY 680
MPTAST+QILGNNE EPYTSNIYTRRVLSGEF +VN HLLKDLTE GLW+ +K +II
Sbjct: 602 MPTASTAQILGNNESIEPYTSNIYTRRVLSGEFQIVNPHLLKDLTERGLWNEEMKNQIIA 661
Query: 681 ENGSVSKISEIPEELKAIYKTVWEIKQKTLVDMAADRGCYIDQSQSLNIHMEQPDHGKLT 740
NGS+ I EIP++LK +YKTVWEI QK ++ MAA+RG +IDQSQSLNIH+ +P++GKLT
Sbjct: 662 CNGSIQSIPEIPDDLKQLYKTVWEISQKIVLKMAAERGAFIDQSQSLNIHIAEPNYGKLT 721
Query: 741 SLHFYAWSKGMKTGMYYLRTRAAADAIKFTVDTSVLNN-EKANRADNDVEANLAQVVCSL 799
S+HFY W +G+KTGMYYLRTR AA+ I+FT++ L + EKA + + + E N A +VCSL
Sbjct: 722 SMHFYGWKQGLKTGMYYLRTRPAANPIQFTLNKEKLKDKEKATKEEEEKERNTAAMVCSL 781
Query: 800 KNQEECMACGS 810
+N+EEC+ CGS
Sbjct: 782 ENREECLMCGS 792
>UNIPROTKB|Q5R919 [details] [associations]
symbol:RRM1 "Ribonucleoside-diphosphate reductase large
subunit" species:9601 "Pongo abelii" [GO:0004748
"ribonucleoside-diphosphate reductase activity, thioredoxin
disulfide as acceptor" evidence=ISS] [GO:0009263
"deoxyribonucleotide biosynthetic process" evidence=ISS]
InterPro:IPR000788 InterPro:IPR008926 InterPro:IPR013346
InterPro:IPR013509 Pfam:PF00317 Pfam:PF02867 PRINTS:PR01183
PROSITE:PS00089 UniPathway:UPA00326 Pfam:PF03477 GO:GO:0005524
GO:GO:0006260 GO:GO:0009263 KO:K10807 InterPro:IPR005144
PROSITE:PS51161 GO:GO:0005971 GO:GO:0004748 SUPFAM:SSF48168
TIGRFAMs:TIGR02506 CTD:6240 HOVERGEN:HBG003447 HSSP:P21524
EMBL:CR859577 RefSeq:NP_001126012.1 UniGene:Pab.9179
ProteinModelPortal:Q5R919 SMR:Q5R919 PRIDE:Q5R919 GeneID:100172956
KEGG:pon:100172956 InParanoid:Q5R919 Uniprot:Q5R919
Length = 792
Score = 1613 (572.9 bits), Expect = 2.6e-290, Sum P(2) = 2.6e-290
Identities = 298/455 (65%), Positives = 368/455 (80%)
Query: 1 MYVIKRDGRKEPVRFDKITARLKKLSYGLSKEHCDPVLVAQKVCAGVYKGVTTTQLDELA 60
M+VIKRDGR+E V FDKIT+R++KL YGL+ + DP + KV G+Y GVTT +LD LA
Sbjct: 1 MHVIKRDGRQERVMFDKITSRIQKLCYGLNMDFVDPAQITMKVIQGLYSGVTTVELDTLA 60
Query: 61 AETAAAMTVNHPDYALLAGRVAVSNLHKITKNSFSETIKDMYNYYNKRSGKKASLVADDV 120
AETAA +T HPDYA+LA R+AVSNLHK K FS+ ++D+YNY N +GK + +VA
Sbjct: 61 AETAATLTTKHPDYAILAARIAVSNLHKEAKKVFSDVMEDLYNYINPHNGKHSPMVAKST 120
Query: 121 YEIIMKNAACLDGAIIXXXXXXXXXXXXKTLERSYLLKMDSRVVERPQHMLMRVSVGIHK 180
+I++ N L+ AII KTLERSYLLK++ +V ERPQHMLMRVSVGIHK
Sbjct: 121 LDIVLANKDRLNSAIIYDRDFSYNYFGFKTLERSYLLKINGKVAERPQHMLMRVSVGIHK 180
Query: 181 DDTDSALKTYHLMSQHWFTHATPTLFNAGTPQPQLSSCFLLCMKDDSIEGIYDTLKKCAI 240
+D D+A++TY+L+S+ WFTHA+PTLFNAGT +PQLSSCFLL MKDDSIEGIYDTLK+CA+
Sbjct: 181 EDIDAAIETYNLLSERWFTHASPTLFNAGTNRPQLSSCFLLSMKDDSIEGIYDTLKQCAL 240
Query: 241 ISKSAGGIGLSIHNIRASGSYIHGTNGSSNGIVPMLQVFNDTARYVDQGGGKRKGAFAIY 300
ISKSAGGIG+++ IRA+GSYI GTNG+SNG+VPML+V+N+TARYVDQGG KR GAFAIY
Sbjct: 241 ISKSAGGIGVAVSCIRATGSYIAGTNGNSNGLVPMLRVYNNTARYVDQGGNKRPGAFAIY 300
Query: 301 LEPWHADIFEFLDLRKNQGKEECRARDLFYALWVPDLFMERVRDDGKWSLFCPSDASGLA 360
LEPWH DIFEFLDL+KN GKEE RARDLF+ALW+PDLFM+RV + WSL CP++ GL
Sbjct: 301 LEPWHLDIFEFLDLKKNTGKEEQRARDLFFALWIPDLFMKRVETNQDWSLMCPNECPGLD 360
Query: 361 DSWGIEFEHLYSQYEEEGRAKMVISARKLWFEILNSQIETGTPYMLFKDSCNRKSNQQNL 420
+ WG EFE LY+ YE++GR + V+ A++LW+ I+ SQ ETGTPYML+KDSCNRKSNQQNL
Sbjct: 361 EVWGEEFEKLYASYEKQGRVRKVVKAQQLWYAIIESQTETGTPYMLYKDSCNRKSNQQNL 420
Query: 421 GTIKSSNLCTEIVEFSSPEETAVCNLASIALPRYV 455
GTIK S+LCTEIVE++S +E AVCNLAS+AL YV
Sbjct: 421 GTIKCSSLCTEIVEYTSKDEVAVCNLASLALNMYV 455
Score = 1199 (427.1 bits), Expect = 2.6e-290, Sum P(2) = 2.6e-290
Identities = 224/371 (60%), Positives = 283/371 (76%)
Query: 441 TAVCNLASIALPRYVREKGVPVQSNVSKLVGSRDSKNRLFDFERLAEVTKIITENLNKII 500
T C+ + Y + V V + S + + +DF++LAEVTK++ NLNKII
Sbjct: 422 TIKCSSLCTEIVEYTSKDEVAVCNLASLALNMYVTSEHTYDFKKLAEVTKVVVRNLNKII 481
Query: 501 DVNHYPIETTRRSNLRHRPIGIGIQGLADTFILLGLPFESPEAQQLNKDIFETIYYHALK 560
D+N+YP+ SN RHRPIGIG+QGLAD FIL+ PFES EAQ LNK IFETIYY AL+
Sbjct: 482 DINYYPVPEACLSNKRHRPIGIGVQGLADAFILMRYPFESAEAQLLNKQIFETIYYGALE 541
Query: 561 ASAELAVKDGPYETYFGSPMSKGILQVDMWNITPSDRWDWSSLREMISKNGVRNSLLVAP 620
AS +LA + GPYETY GSP+SKGILQ DMWN+TP+D WDW L+E I+K G+RNSLL+AP
Sbjct: 542 ASCDLAKEQGPYETYEGSPVSKGILQYDMWNVTPTDLWDWKLLKEKIAKYGIRNSLLIAP 601
Query: 621 MPTASTSQILGNNECFEPYTSNIYTRRVLSGEFIVVNKHLLKDLTELGLWSHALKTKIIY 680
MPTAST+QILGNNE EPYTSNIYTRRVLSGEF +VN HLLKDLTE GLW +K +II
Sbjct: 602 MPTASTAQILGNNESIEPYTSNIYTRRVLSGEFQIVNPHLLKDLTERGLWHEEMKNQIIA 661
Query: 681 ENGSVSKISEIPEELKAIYKTVWEIKQKTLVDMAADRGCYIDQSQSLNIHMEQPDHGKLT 740
NGS+ I EIP++LK +YKTVWEI QKT++ MAA+RG +IDQSQSLNIH+ +P++GKLT
Sbjct: 662 CNGSIQSIPEIPDDLKQLYKTVWEISQKTVLKMAAERGAFIDQSQSLNIHIAEPNYGKLT 721
Query: 741 SLHFYAWSKGMKTGMYYLRTRAAADAIKFTVDTSVLNN-EKANRADNDVEANLAQVVCSL 799
S+HFY W +G+KTGMYYLRTR AA+ I+FT++ L + EK ++ + + E N A +VCSL
Sbjct: 722 SMHFYGWKQGLKTGMYYLRTRPAANPIQFTLNKEKLKDKEKVSKEEEEKERNTAAMVCSL 781
Query: 800 KNQEECMACGS 810
+N++EC+ CGS
Sbjct: 782 ENRDECLMCGS 792
>ZFIN|ZDB-GENE-990415-247 [details] [associations]
symbol:rrm1 "ribonucleotide reductase M1
polypeptide" species:7955 "Danio rerio" [GO:0055114
"oxidation-reduction process" evidence=IEA] [GO:0004748
"ribonucleoside-diphosphate reductase activity, thioredoxin
disulfide as acceptor" evidence=IEA;ISS] [GO:0005971
"ribonucleoside-diphosphate reductase complex" evidence=IEA]
[GO:0006260 "DNA replication" evidence=IEA] [GO:0005524 "ATP
binding" evidence=IEA] [GO:0009263 "deoxyribonucleotide
biosynthetic process" evidence=ISS] [GO:0003824 "catalytic
activity" evidence=IEA] [GO:0005737 "cytoplasm" evidence=IEA]
[GO:0016491 "oxidoreductase activity" evidence=IEA] [GO:0000166
"nucleotide binding" evidence=IEA] [GO:0008152 "metabolic process"
evidence=IEA] InterPro:IPR000788 InterPro:IPR008926
InterPro:IPR013346 InterPro:IPR013509 Pfam:PF00317 Pfam:PF02867
PRINTS:PR01183 PROSITE:PS00089 UniPathway:UPA00326 Pfam:PF03477
ZFIN:ZDB-GENE-990415-247 GO:GO:0005524 GO:GO:0006260 GO:GO:0009263
KO:K10807 InterPro:IPR005144 PROSITE:PS51161 eggNOG:COG0209
GO:GO:0005971 GO:GO:0004748 SUPFAM:SSF48168 HOGENOM:HOG000057035
TIGRFAMs:TIGR02506 EMBL:U57964 IPI:IPI00482388 RefSeq:NP_571530.1
UniGene:Dr.33356 ProteinModelPortal:P79732 SMR:P79732 STRING:P79732
PRIDE:P79732 GeneID:30740 KEGG:dre:30740 CTD:6240
HOVERGEN:HBG003447 InParanoid:P79732 OrthoDB:EOG4ZW59G
NextBio:20807088 ArrayExpress:P79732 Uniprot:P79732
Length = 794
Score = 1603 (569.3 bits), Expect = 2.5e-285, Sum P(2) = 2.5e-285
Identities = 310/510 (60%), Positives = 391/510 (76%)
Query: 1 MYVIKRDGRKEPVRFDKITARLKKLSYGLSKEHCDPVLVAQKVCAGVYKGVTTTQLDELA 60
M+VIKRDG +E V FDKIT+R++KL YGL+ + DP + KV G+Y GVTT +LD LA
Sbjct: 1 MHVIKRDGGQEGVMFDKITSRIQKLCYGLNSDFVDPTQITMKVIQGLYSGVTTVELDTLA 60
Query: 61 AETAAAMTVNHPDYALLAGRVAVSNLHKITKNSFSETIKDMYNYYNKRSGKKASLVADDV 120
AETAA T HPDYA+LA R+AVSNLHK TK FSE ++D+YNY N + + + +++ +
Sbjct: 61 AETAATSTTKHPDYAILAARIAVSNLHKETKKVFSEVMEDLYNYVNPLNSRHSPMISKET 120
Query: 121 YEIIMKNAACLDGAIIXXXXXXXXXXXXKTLERSYLLKMDSRVVERPQHMLMRVSVGIHK 180
+I++ N L+ AII KTLERSYLLK++ +V ERPQHMLMRVSVGIHK
Sbjct: 121 LDIVLANKDRLNSAIIYDRDFSYNFFGFKTLERSYLLKINGKVAERPQHMLMRVSVGIHK 180
Query: 181 DDTDSALKTYHLMSQHWFTHATPTLFNAGTPQPQLSSCFLLCMKDDSIEGIYDTLKKCAI 240
+D +A++TY+L+S+ WFTHA+PTLFNAGT +PQLSSCFLL MKDDSIEGIYDTLK+CA+
Sbjct: 181 EDIAAAIETYNLLSEKWFTHASPTLFNAGTNRPQLSSCFLLAMKDDSIEGIYDTLKQCAL 240
Query: 241 ISKSAGGIGLSIHNIRASGSYIHGTNGSSNGIVPMLQVFNDTARYVDQGGGKRKGAFAIY 300
ISKSAGGIG+++ IRA+G YI GTNG+SNG+VPML+V N+TARYVDQGG KR GAFA+Y
Sbjct: 241 ISKSAGGIGVAVSCIRATGRYIAGTNGNSNGLVPMLRVNNNTARYVDQGGNKRPGAFAMY 300
Query: 301 LEPWHADIFEFLDLRKNQGKEECRARDLFYALWVPDLFMERVRDDGKWSLFCPSDASGLA 360
LEPWH DIF+FL+L+KN GKEE RARDLFYALW+PDLFM+RV +G WSL CP+D GL
Sbjct: 301 LEPWHFDIFDFLELKKNTGKEEQRARDLFYALWIPDLFMKRVETNGDWSLMCPNDCPGLD 360
Query: 361 DSWGIEFEHLYSQYEEEGRAKMVISARKLWFEILNSQIETGTPYMLFKDSCNRKSNQQNL 420
+ WG EFE LY++YE+EGRAK V+ A++LW+ I+ SQ ETGTPYML+KD+CNRKSN+QNL
Sbjct: 361 ECWGEEFEKLYAKYEQEGRAKRVVKAQQLWYAIIESQTETGTPYMLYKDACNRKSNRQNL 420
Query: 421 GTIKSSNLCTEIVEFSSPEETAVCNLASIALPRYVR-EKGVPVQ--SNVSKLVGSRDSKN 477
GTIK SNLCTEIVE++S +E AVCNLASIAL YV E+ Q ++V+K++ + N
Sbjct: 421 GTIKCSNLCTEIVEYTSADEVAVCNLASIALNMYVTSERTFDFQKLASVTKVIVK--NLN 478
Query: 478 RLFDFERLAEVTKIITENLNKIIDVNHYPI 507
++ D V + EN NK H PI
Sbjct: 479 KIIDINYYP-VKE--AENSNK----RHRPI 501
Score = 1162 (414.1 bits), Expect = 2.5e-285, Sum P(2) = 2.5e-285
Identities = 219/373 (58%), Positives = 276/373 (73%)
Query: 441 TAVCNLASIALPRYVREKGVPVQSNVSKLVGSRDSKNRLFDFERLAEVTKIITENLNKII 500
T C+ + Y V V + S + + R FDF++LA VTK+I +NLNKII
Sbjct: 422 TIKCSNLCTEIVEYTSADEVAVCNLASIALNMYVTSERTFDFQKLASVTKVIVKNLNKII 481
Query: 501 DVNHYPIETTRRSNLRHRPIGIGIQGLADTFILLGLPFESPEAQQLNKDIFETIYYHALK 560
D+N+YP++ SN RHRPIGIG+QGLAD FIL+ PFES EAQ LN IFETIYY AL+
Sbjct: 482 DINYYPVKEAENSNKRHRPIGIGVQGLADAFILMRFPFESTEAQLLNTQIFETIYYAALE 541
Query: 561 ASAELAVKDGPYETYFGSPMSKGILQVDMWNITPSDRWDWSSLREMISKNGVRNSLLVAP 620
+S ELA + GPY+TY G P+SKGILQ DMW TP+D WDW++L+E I+ +GVRNSLL+AP
Sbjct: 542 SSCELAAEYGPYQTYAGCPVSKGILQYDMWEKTPTDLWDWAALKEKIANDGVRNSLLLAP 601
Query: 621 MPTASTSQILGNNECFEPYTSNIYTRRVLSGEFIVVNKHLLKDLTELGLWSHALKTKIIY 680
MPTAST+QILGNNE EPYTSNIY RRVLSGEF +VN HLLKDLTE GLW+ +K +II
Sbjct: 602 MPTASTAQILGNNESIEPYTSNIYHRRVLSGEFQIVNPHLLKDLTERGLWNEEMKNQIIA 661
Query: 681 ENGSVSKISEIPEELKAIYKTVWEIKQKTLVDMAADRGCYIDQSQSLNIHMEQPDHGKLT 740
+NGS+ I IP++LK +YKTVWEI QKT++ MAADRG YIDQSQSLNIH+ +P++GKLT
Sbjct: 662 QNGSIQTIPAIPDDLKELYKTVWEISQKTILKMAADRGAYIDQSQSLNIHIAEPNYGKLT 721
Query: 741 SLHFYAWSKGMKTGMYYLRTRAAADAIKFTVDTSVLNNEKANRADNDVEA---NLAQVVC 797
S+HFY W +G+KTGMYYLRT+ A+ I+FT++ L + + D E N A +VC
Sbjct: 722 SMHFYGWKQGLKTGMYYLRTKPGANPIQFTLNKEKLKETQKTTSSEDEETKERNKAAMVC 781
Query: 798 SLKNQEECMACGS 810
SL+N+ EC+ CGS
Sbjct: 782 SLENRHECLMCGS 794
>POMBASE|SPAC1F7.05 [details] [associations]
symbol:cdc22 "ribonucleoside reductase large subunit
Cdc22" species:4896 "Schizosaccharomyces pombe" [GO:0004748
"ribonucleoside-diphosphate reductase activity, thioredoxin
disulfide as acceptor" evidence=ISS;IMP] [GO:0005515 "protein
binding" evidence=IPI] [GO:0005524 "ATP binding" evidence=ISM]
[GO:0005737 "cytoplasm" evidence=IDA] [GO:0005829 "cytosol"
evidence=IDA] [GO:0005971 "ribonucleoside-diphosphate reductase
complex" evidence=IEA] [GO:0006213 "pyrimidine nucleoside metabolic
process" evidence=IC] [GO:0007090 "regulation of S phase of mitotic
cell cycle" evidence=IMP] [GO:0009212 "pyrimidine
deoxyribonucleoside triphosphate biosynthetic process" evidence=IC]
[GO:0009216 "purine deoxyribonucleoside triphosphate biosynthetic
process" evidence=IC] [GO:0009263 "deoxyribonucleotide biosynthetic
process" evidence=ISS] [GO:0042278 "purine nucleoside metabolic
process" evidence=IC] [GO:0090329 "regulation of DNA-dependent DNA
replication" evidence=IMP] InterPro:IPR000788 InterPro:IPR008926
InterPro:IPR013346 InterPro:IPR013509 Pfam:PF00317 Pfam:PF02867
PRINTS:PR01183 PROSITE:PS00089 UniPathway:UPA00326
PomBase:SPAC1F7.05 Pfam:PF03477 GO:GO:0005829 GO:GO:0005524
EMBL:CU329670 GenomeReviews:CU329670_GR GO:GO:0006260 GO:GO:0007090
GO:GO:0090329 GO:GO:0006213 GO:GO:0009263 KO:K10807 GO:GO:0042278
InterPro:IPR005144 PROSITE:PS51161 eggNOG:COG0209 GO:GO:0005971
GO:GO:0004748 SUPFAM:SSF48168 HOGENOM:HOG000057035 OMA:PQARNSN
TIGRFAMs:TIGR02506 OrthoDB:EOG480N4T EMBL:X65116 PIR:S34807
PIR:S62577 RefSeq:NP_594491.1 ProteinModelPortal:P36602 SMR:P36602
IntAct:P36602 STRING:P36602 PRIDE:P36602 EnsemblFungi:SPAC1F7.05.1
GeneID:2541695 KEGG:spo:SPAC1F7.05 NextBio:20802788 GO:GO:0009216
GO:GO:0009212 Uniprot:P36602
Length = 811
Score = 1624 (576.7 bits), Expect = 3.1e-281, Sum P(3) = 3.1e-281
Identities = 298/483 (61%), Positives = 387/483 (80%)
Query: 1 MYVIKRDGRKEPVRFDKITARLKKLSYGLSKEHCDPVLVAQKVCAGVYKGVTTTQLDELA 60
M+V KRDGR+E V FDKITAR+ +L YGL +H DPV + QKV +GVY GVTT +LD LA
Sbjct: 1 MFVYKRDGRQEKVAFDKITARVSRLCYGLDSDHVDPVEITQKVISGVYPGVTTIELDNLA 60
Query: 61 AETAAAMTVNHPDYALLAGRVAVSNLHKITKNSFSETIKDMYNYYNKRSGKKASLVADDV 120
AETAA MT HPDYA+LA R+AVSNLHK T+ FS ++ +++Y N ++ K A +++D +
Sbjct: 61 AETAATMTTKHPDYAILAARIAVSNLHKQTEKVFSTVVQQLHDYVNPKTDKPAPMISDKI 120
Query: 121 YEIIMKNAACLDGAIIXXXXXXXXXXXXKTLERSYLLKMDSRVVERPQHMLMRVSVGIHK 180
Y+I+MK+ LD AII KTLERSYLL++D +V ERPQHM+MRV+VGIH
Sbjct: 121 YDIVMKHKDELDSAIIYDRDFTYNFFGFKTLERSYLLRIDGKVAERPQHMIMRVAVGIHG 180
Query: 181 DDTDSALKTYHLMSQHWFTHATPTLFNAGTPQPQLSSCFLLCMKDDSIEGIYDTLKKCAI 240
+D ++A++TY+LMSQ +FTHA+PTLFNAGTP+PQLSSCFL+ MKDDSIEGIYDTLK CA+
Sbjct: 181 EDIEAAIETYNLMSQRYFTHASPTLFNAGTPRPQLSSCFLVTMKDDSIEGIYDTLKMCAM 240
Query: 241 ISKSAGGIGLSIHNIRASGSYIHGTNGSSNGIVPMLQVFNDTARYVDQGGGKRKGAFAIY 300
ISK+AGGIG++IHNIRA+GSYI GTNG+SNGIVPM++V+N+TARYVDQGG KR GAFA Y
Sbjct: 241 ISKTAGGIGINIHNIRATGSYIAGTNGTSNGIVPMIRVYNNTARYVDQGGNKRPGAFAAY 300
Query: 301 LEPWHADIFEFLDLRKNQGKEECRARDLFYALWVPDLFMERVRDDGKWSLFCPSDASGLA 360
LEPWHAD+ +FL+LRK G E+ RAR++FYALW+PDLFM+RV + +W+ FCP++A GLA
Sbjct: 301 LEPWHADVMDFLELRKTHGNEDFRAREMFYALWIPDLFMQRVERNEQWTFFCPNEAPGLA 360
Query: 361 DSWGIEFEHLYSQYEEEGRAKMVISARKLWFEILNSQIETGTPYMLFKDSCNRKSNQQNL 420
D WG EF LY +YE+E R + + A+K+W+ IL SQ+ETG P+ML+KDSCNRKSNQ+N+
Sbjct: 361 DVWGDEFVALYEKYEKENRGRRSLPAQKVWYAILQSQVETGNPFMLYKDSCNRKSNQKNV 420
Query: 421 GTIKSSNLCTEIVEFSSPEETAVCNLASIALPRYVREKGVPVQS--NVSKLVGSRDSKNR 478
GTI+ SNLCTEIVE+SSP+E AVCNLAS+ALP ++++ Q +V K+V +R+ N+
Sbjct: 421 GTIRCSNLCTEIVEYSSPDEVAVCNLASVALPTFIKDGKYNFQKLHDVVKVV-TRNL-NK 478
Query: 479 LFD 481
+ D
Sbjct: 479 IID 481
Score = 1074 (383.1 bits), Expect = 3.1e-281, Sum P(3) = 3.1e-281
Identities = 197/309 (63%), Positives = 249/309 (80%)
Query: 476 KNRLFDFERLAEVTKIITENLNKIIDVNHYPIETTRRSNLRHRPIGIGIQGLADTFILLG 535
K+ ++F++L +V K++T NLNKIIDVN+YP+ RRSN+RHRP+G+G+QGLAD F L
Sbjct: 456 KDGKYNFQKLHDVVKVVTRNLNKIIDVNYYPVPEARRSNMRHRPVGLGVQGLADAFFALR 515
Query: 536 LPFESPEAQQLNKDIFETIYYHALKASAELAVKDGPYETYFGSPMSKGILQVDMWNITPS 595
LPFES A++LN IFETIY+ AL+AS E+A +G YE+Y GSP S+GILQ DMWN+ P+
Sbjct: 516 LPFESAGAKKLNIQIFETIYHAALEASCEIAQVEGTYESYEGSPASQGILQYDMWNVNPT 575
Query: 596 DRWDWSSLREMISKNGVRNSLLVAPMPTASTSQILGNNECFEPYTSNIYTRRVLSGEFIV 655
D WDW+ L+E I+K+G+RNSLLVAPMPTASTSQILG NECFEPYTSN+Y RRVLSGEF +
Sbjct: 576 DLWDWAELKEKIAKHGIRNSLLVAPMPTASTSQILGFNECFEPYTSNMYQRRVLSGEFQI 635
Query: 656 VNKHLLKDLTELGLWSHALKTKIIYENGSVSKISEIPEELKAIYKTVWEIKQKTLVDMAA 715
VN LLKDL E LW+ +K K++ +GS+ I EIP++LK +YKTVWEI QKT++D AA
Sbjct: 636 VNPWLLKDLVERDLWNEDMKNKLVMLDGSIQAIPEIPQDLKDLYKTVWEISQKTVIDYAA 695
Query: 716 DRGCYIDQSQSLNIHMEQPDHGKLTSLHFYAWSKGMKTGMYYLRTRAAADAIKFTVDTSV 775
DRG +IDQSQSLNIH++ P +GK+TS+HFY W KG+KTGMYYLRT AA+ AIKFTVD
Sbjct: 696 DRGPFIDQSQSLNIHLKDPSYGKITSMHFYGWKKGLKTGMYYLRTMAASAAIKFTVDPVA 755
Query: 776 LN--NEKAN 782
L NE++N
Sbjct: 756 LRARNEESN 764
Score = 46 (21.3 bits), Expect = 3.1e-281, Sum P(3) = 3.1e-281
Identities = 7/16 (43%), Positives = 10/16 (62%)
Query: 795 VVCSLKNQEECMACGS 810
+ CS+KN E C C +
Sbjct: 796 LACSIKNPEACEMCSA 811
>ASPGD|ASPL0000074083 [details] [associations]
symbol:AN4380 species:162425 "Emericella nidulans"
[GO:0043173 "nucleotide salvage" evidence=RCA] [GO:0004748
"ribonucleoside-diphosphate reductase activity, thioredoxin
disulfide as acceptor" evidence=IEA;RCA] [GO:0009263
"deoxyribonucleotide biosynthetic process" evidence=IEA]
[GO:0090329 "regulation of DNA-dependent DNA replication"
evidence=IEA] [GO:0007090 "regulation of S phase of mitotic cell
cycle" evidence=IEA] [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0005634 "nucleus" evidence=IEA] [GO:0005829 "cytosol"
evidence=IEA] [GO:0005971 "ribonucleoside-diphosphate reductase
complex" evidence=IEA] [GO:0005524 "ATP binding" evidence=IEA]
[GO:0006260 "DNA replication" evidence=IEA] InterPro:IPR000788
InterPro:IPR008926 InterPro:IPR013346 InterPro:IPR013509
Pfam:PF00317 Pfam:PF02867 PRINTS:PR01183 PROSITE:PS00089
UniPathway:UPA00326 Pfam:PF03477 GO:GO:0005524 GO:GO:0006260
EMBL:BN001303 EMBL:AACD01000076 KO:K10807 InterPro:IPR005144
PROSITE:PS51161 eggNOG:COG0209 GO:GO:0005971 GO:GO:0004748
SUPFAM:SSF48168 HOGENOM:HOG000057035 TIGRFAMs:TIGR02506 OMA:YKYGVKT
OrthoDB:EOG480N4T RefSeq:XP_661984.1 ProteinModelPortal:Q5B500
SMR:Q5B500 STRING:Q5B500 EnsemblFungi:CADANIAT00006078
GeneID:2872173 KEGG:ani:AN4380.2 Uniprot:Q5B500
Length = 865
Score = 1644 (583.8 bits), Expect = 5.0e-281, Sum P(3) = 5.0e-281
Identities = 301/449 (67%), Positives = 372/449 (82%)
Query: 7 DGRKEPVRFDKITARLKKLSYGLSKEHCDPVLVAQKVCAGVYKGVTTTQLDELAAETAAA 66
DGRKE V+FDKITAR+ +L YGL EH D + QKV +GVY+GVTT +LD LAAETAA
Sbjct: 21 DGRKERVQFDKITARVSRLCYGLDPEHVDAAAITQKVISGVYQGVTTVELDNLAAETAAY 80
Query: 67 MTVNHPDYALLAGRVAVSNLHKITKNSFSETIKDMYNYYNKRSGKKASLVADDVYEIIMK 126
MTV HPDYA+LA R+AVSNLHK TK FS I D+Y+Y N ++ K A +++ + YEI+MK
Sbjct: 81 MTVTHPDYAILAARIAVSNLHKQTKKQFSLVISDLYHYVNPKNKKPAPMISKETYEIVMK 140
Query: 127 NAACLDGAIIXXXXXXXXXXXXKTLERSYLLKMDSRVVERPQHMLMRVSVGIHKDDTDSA 186
+A L+ AI+ KTLERSYLL++D ++ ERPQH+LMRV+VGIH +D + A
Sbjct: 141 HAEELNSAIVYDRDFNYNFFGFKTLERSYLLRLDGKIAERPQHLLMRVAVGIHGNDIERA 200
Query: 187 LKTYHLMSQHWFTHATPTLFNAGTPQPQLSSCFLLCMKDDSIEGIYDTLKKCAIISKSAG 246
++TY+LMSQ +FTHA+PTLFNAGTPQPQL+SCFL+ MK+DSI+GIYDTLK CA+ISK+AG
Sbjct: 201 IETYNLMSQKYFTHASPTLFNAGTPQPQLASCFLVDMKEDSIDGIYDTLKTCAMISKTAG 260
Query: 247 GIGLSIHNIRASGSYIHGTNGSSNGIVPMLQVFNDTARYVDQGGGKRKGAFAIYLEPWHA 306
GIGL++H IRA+GSYI GTNGSSNGIVPML+VFN+TARYVDQGG KR GAFAIYLEPWHA
Sbjct: 261 GIGLNVHRIRATGSYIAGTNGSSNGIVPMLRVFNNTARYVDQGGNKRPGAFAIYLEPWHA 320
Query: 307 DIFEFLDLRKNQGKEECRARDLFYALWVPDLFMERVRDDGKWSLFCPSDASGLADSWGIE 366
D+FEFLDLRKN GKEE RARDLFYALW PDLFM+RV +G W+LFCP++A GLAD +G E
Sbjct: 321 DVFEFLDLRKNHGKEEVRARDLFYALWTPDLFMKRVEANGDWTLFCPNEAPGLADVYGDE 380
Query: 367 FEHLYSQYEEEGRAKMVISARKLWFEILNSQIETGTPYMLFKDSCNRKSNQQNLGTIKSS 426
F+ LY QYE+EGR + I A+KLW+ IL +Q ETG P+ML+KD+CN+KSNQ+NLGTI+SS
Sbjct: 381 FDALYEQYEKEGRGRRTIKAQKLWYAILEAQTETGNPFMLYKDACNKKSNQKNLGTIRSS 440
Query: 427 NLCTEIVEFSSPEETAVCNLASIALPRYV 455
NLCTEI+E+++P+E AVCNLAS+ALP +V
Sbjct: 441 NLCTEIIEYTAPDEVAVCNLASLALPTFV 469
Score = 1043 (372.2 bits), Expect = 5.0e-281, Sum P(3) = 5.0e-281
Identities = 194/311 (62%), Positives = 242/311 (77%)
Query: 474 DSKNRLFDFERLAEVTKIITENLNKIIDVNHYPIETTRRSNLRHRPIGIGIQGLADTFIL 533
D+ +DF +L EV +++ NLNKIID+N+YP+ ++SN RHRPI +G+ GLAD F+
Sbjct: 470 DASRGEYDFGKLHEVVQVLVRNLNKIIDINYYPVPEAKKSNFRHRPIALGVNGLADAFLA 529
Query: 534 LGLPFESPEAQQLNKDIFETIYYHALKASAELAVKDGPYETYFGSPMSKGILQVDMWNIT 593
L LPF+S EA+QLN IFETIY+ AL AS+ LA +DGPYE+Y GSP+S+GILQ DMW T
Sbjct: 530 LRLPFDSAEAKQLNIQIFETIYHAALTASSNLAKEDGPYESYEGSPVSQGILQYDMWERT 589
Query: 594 PSDRWDWSSLREMISKNGVRNSLLVAPMPTASTSQILGNNECFEPYTSNIYTRRVLSGEF 653
P+D WDW +L+ I++ GVRNSLLVAPMPTASTSQILG NECFEPYTSNIY+RRVL+GEF
Sbjct: 590 PTDLWDWDALKAKIAQTGVRNSLLVAPMPTASTSQILGFNECFEPYTSNIYSRRVLAGEF 649
Query: 654 IVVNKHLLKDLTELGLWSHALKTKIIYENGSVSKISEIPEELKAIYKTVWEIKQKTLVDM 713
VVN LLKDL +LGLWS +K +II E GSV I IP+++KA+YKTVWEI Q+ +++M
Sbjct: 650 QVVNPWLLKDLVDLGLWSDNMKNRIIAEGGSVQNIPNIPDDIKALYKTVWEISQRRILEM 709
Query: 714 AADRGCYIDQSQSLNIHMEQPDHGKLTSLHFYAWSKGMKTGMYYLRTRAAADAIKFTVDT 773
AADRG YIDQSQSLNIH+++P GK+TS+HF W G+KTGMYYLRT AA+ I+FTVD
Sbjct: 710 AADRGAYIDQSQSLNIHLKEPTMGKITSMHFAGWKMGLKTGMYYLRTMAASAPIQFTVDQ 769
Query: 774 SVLNNEKANRA 784
L N A
Sbjct: 770 EQLKVADTNVA 780
Score = 55 (24.4 bits), Expect = 5.0e-281, Sum P(3) = 5.0e-281
Identities = 11/38 (28%), Positives = 22/38 (57%)
Query: 771 VDTSVLNNEKANRADNDVEANLAQVVCSLKNQEECMAC 808
VDTS ++ ++ D+ + + CS++N+E C+ C
Sbjct: 827 VDTSDEEKKEGEPSEADIYSQKV-LQCSIENKEACIMC 863
>UNIPROTKB|Q9UW15 [details] [associations]
symbol:rnr-1 "Ribonucleoside-diphosphate reductase large
chain" species:367110 "Neurospora crassa OR74A" [GO:0004748
"ribonucleoside-diphosphate reductase activity, thioredoxin
disulfide as acceptor" evidence=ISS] [GO:0009263
"deoxyribonucleotide biosynthetic process" evidence=ISS]
InterPro:IPR000788 InterPro:IPR008926 InterPro:IPR013346
InterPro:IPR013509 Pfam:PF00317 Pfam:PF02867 PRINTS:PR01183
PROSITE:PS00089 UniPathway:UPA00326 Pfam:PF03477 GO:GO:0005524
GO:GO:0006260 EMBL:AABX02000008 GO:GO:0009263 KO:K10807
InterPro:IPR005144 PROSITE:PS51161 eggNOG:COG0209 GO:GO:0005971
GO:GO:0004748 SUPFAM:SSF48168 HOGENOM:HOG000057035
TIGRFAMs:TIGR02506 EMBL:AF171697 EMBL:AL390092 PIR:T43711
RefSeq:XP_956818.1 UniGene:Ncr.20426 ProteinModelPortal:Q9UW15
SMR:Q9UW15 STRING:Q9UW15 EnsemblFungi:EFNCRT00000002608
GeneID:3872956 KEGG:ncr:NCU03539 OMA:ETIYHAS OrthoDB:EOG480N4T
Uniprot:Q9UW15
Length = 929
Score = 1639 (582.0 bits), Expect = 1.8e-280, Sum P(2) = 1.8e-280
Identities = 303/455 (66%), Positives = 369/455 (81%)
Query: 1 MYVIKRDGRKEPVRFDKITARLKKLSYGLSKEHCDPVLVAQKVCAGVYKGVTTTQLDELA 60
MYV KRDGR+E V+FDKITAR+ +L YGL H DPV + QKV +GVY GVTT QLD+LA
Sbjct: 1 MYVKKRDGRQERVQFDKITARVSRLCYGLDMNHVDPVAITQKVISGVYGGVTTAQLDDLA 60
Query: 61 AETAAAMTVNHPDYALLAGRVAVSNLHKITKNSFSETIKDMYNYYNKRSGKKASLVADDV 120
AETAA MTV HPDYA+LA R+AVSNLHK TK +S I ++YNY N R+GK + ++A DV
Sbjct: 61 AETAAYMTVTHPDYAILAARIAVSNLHKQTKKQWSLVISELYNYVNPRTGKHSPMIAKDV 120
Query: 121 YEIIMKNAACLDGAIIXXXXXXXXXXXXKTLERSYLLKMDSRVVERPQHMLMRVSVGIHK 180
YE +M++ D AI+ KTLERSYLLK+D ++ ERPQHM+MRV+VGI
Sbjct: 121 YECVMRHKDEFDSAIVYDRDFNYQYFGFKTLERSYLLKLDGQIAERPQHMIMRVAVGIWG 180
Query: 181 DDTDSALKTYHLMSQHWFTHATPTLFNAGTPQPQLSSCFLLCMKDDSIEGIYDTLKKCAI 240
DD + ++TY+LMS FTHA+PTLFNAGTPQPQLSSCFL+ MK+DSIEGIYDTLK CA+
Sbjct: 181 DDVERVIETYNLMSLKTFTHASPTLFNAGTPQPQLSSCFLVDMKEDSIEGIYDTLKTCAM 240
Query: 241 ISKSAGGIGLSIHNIRASGSYIHGTNGSSNGIVPMLQVFNDTARYVDQGGGKRKGAFAIY 300
ISK AGGIGL+IH IRA+GSYI GTNG+SNGIVPML+VFN+TARYVDQGG KR GAFAIY
Sbjct: 241 ISKMAGGIGLNIHRIRATGSYIAGTNGTSNGIVPMLRVFNNTARYVDQGGNKRPGAFAIY 300
Query: 301 LEPWHADIFEFLDLRKNQGKEECRARDLFYALWVPDLFMERVRDDGKWSLFCPSDASGLA 360
LEPWHAD+FEFLDLRKN GKEE RARDLF ALW+PDLFM+RV +G+W+L CP + GLA
Sbjct: 301 LEPWHADVFEFLDLRKNHGKEEVRARDLFLALWIPDLFMKRVEQNGQWTLMCPHECPGLA 360
Query: 361 DSWGIEFEHLYSQYEEEGRAKMVISARKLWFEILNSQIETGTPYMLFKDSCNRKSNQQNL 420
D +G EFE LY +YE+EG+ + + A+KLW+ IL +Q ETG P+ML+KD+CNRKSNQ+NL
Sbjct: 361 DVYGDEFEALYEKYEKEGKGRKTVKAQKLWYAILEAQTETGNPFMLYKDACNRKSNQKNL 420
Query: 421 GTIKSSNLCTEIVEFSSPEETAVCNLASIALPRYV 455
GTI+SSNLCTEI+E+S+P+E AVCNLAS+AL ++
Sbjct: 421 GTIRSSNLCTEIIEYSAPDEVAVCNLASLALSAFI 455
Score = 1080 (385.2 bits), Expect = 1.8e-280, Sum P(2) = 1.8e-280
Identities = 196/303 (64%), Positives = 243/303 (80%)
Query: 474 DSKNRLFDFERLAEVTKIITENLNKIIDVNHYPIETTRRSNLRHRPIGIGIQGLADTFIL 533
D +N +DF++L EVT+++ NLNKIID+NHYP++ SN+RHRPIG+G+QGLAD F+
Sbjct: 456 DYENASYDFKKLHEVTQVVVRNLNKIIDINHYPVKEAHNSNMRHRPIGVGVQGLADAFLA 515
Query: 534 LGLPFESPEAQQLNKDIFETIYYHALKASAELAVKDGPYETYFGSPMSKGILQVDMWNIT 593
L +PF+S A +LN IFETIY+ AL AS +LA + GPY TY GSP+S+GILQ DMWN+T
Sbjct: 516 LRMPFDSDAASKLNIQIFETIYHAALTASCQLAKEQGPYATYEGSPVSQGILQYDMWNVT 575
Query: 594 PSDRWDWSSLREMISKNGVRNSLLVAPMPTASTSQILGNNECFEPYTSNIYTRRVLSGEF 653
P++ WDW++L+ I K GVRNSLL+APMPTASTSQILGNNECFEPYTSNIY RRVL+GEF
Sbjct: 576 PTNLWDWTALKADIKKYGVRNSLLLAPMPTASTSQILGNNECFEPYTSNIYQRRVLAGEF 635
Query: 654 IVVNKHLLKDLTELGLWSHALKTKIIYENGSVSKISEIPEELKAIYKTVWEIKQKTLVDM 713
VVN LL+DL E+GLWS A+K +II E GS+ I IP ++KA+YKTVWEI Q+T+V M
Sbjct: 636 QVVNPWLLRDLVEMGLWSDAMKNRIIAEGGSIQNIQSIPNDIKALYKTVWEISQRTIVKM 695
Query: 714 AADRGCYIDQSQSLNIHMEQPDHGKLTSLHFYAWSKGMKTGMYYLRTRAAADAIKFTVDT 773
AADRG +IDQSQSLNIHM +P GK+TS+HF W G+KTGMYYLRT+AAA I+FTVD
Sbjct: 696 AADRGAFIDQSQSLNIHMREPTMGKITSMHFAGWKMGLKTGMYYLRTQAAAQPIQFTVDQ 755
Query: 774 SVL 776
L
Sbjct: 756 EAL 758
>CGD|CAL0001524 [details] [associations]
symbol:RNR1 species:5476 "Candida albicans" [GO:0004748
"ribonucleoside-diphosphate reductase activity, thioredoxin
disulfide as acceptor" evidence=IEA;NAS] [GO:0005829 "cytosol"
evidence=IEA] [GO:0005971 "ribonucleoside-diphosphate reductase
complex" evidence=IEA] [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0030447 "filamentous growth" evidence=IMP]
[GO:0009263 "deoxyribonucleotide biosynthetic process"
evidence=IEA] [GO:0090329 "regulation of DNA-dependent DNA
replication" evidence=IEA] [GO:0055114 "oxidation-reduction
process" evidence=IEA] [GO:0007090 "regulation of S phase of
mitotic cell cycle" evidence=IEA] [GO:0009267 "cellular response to
starvation" evidence=IMP] [GO:0036170 "filamentous growth of a
population of unicellular organisms in response to starvation"
evidence=IMP] [GO:0036180 "filamentous growth of a population of
unicellular organisms in response to biotic stimulus" evidence=IMP]
[GO:0071216 "cellular response to biotic stimulus" evidence=IMP]
InterPro:IPR000788 InterPro:IPR008926 InterPro:IPR013346
InterPro:IPR013509 Pfam:PF00317 Pfam:PF02867 PRINTS:PR01183
PROSITE:PS00089 UniPathway:UPA00326 CGD:CAL0001524 Pfam:PF03477
GO:GO:0005524 GO:GO:0071216 GO:GO:0036180 GO:GO:0006260
GO:GO:0009267 GO:GO:0036170 EMBL:AACQ01000088 EMBL:AACQ01000087
KO:K10807 InterPro:IPR005144 PROSITE:PS51161 eggNOG:COG0209
GO:GO:0005971 GO:GO:0004748 SUPFAM:SSF48168 TIGRFAMs:TIGR02506
RefSeq:XP_715255.1 RefSeq:XP_715320.1 ProteinModelPortal:Q5A0N3
SMR:Q5A0N3 STRING:Q5A0N3 GeneID:3642989 GeneID:3643046
KEGG:cal:CaO19.13201 KEGG:cal:CaO19.5779 Uniprot:Q5A0N3
Length = 854
Score = 2641 (934.7 bits), Expect = 5.7e-277, Sum P(2) = 5.7e-277
Identities = 483/775 (62%), Positives = 620/775 (80%)
Query: 1 MYVIKRDGRKEPVRFDKITARLKKLSYGLSKEHCDPVLVAQKVCAGVYKGVTTTQLDELA 60
MYV KRDGRKEPVRFDKITAR+++L YGL+ H +PV + QKV +GVY+GVTT +LD LA
Sbjct: 1 MYVYKRDGRKEPVRFDKITARVQRLCYGLNPNHVEPVAITQKVISGVYQGVTTIELDNLA 60
Query: 61 AETAAAMTVNHPDYALLAGRVAVSNLHKITKNSFSETIKDMYNYYNKRSGKKASLVADDV 120
AE AA MT HPDYA+LA R+AVSNLHK T +S+ KD+Y Y N ++G + +++ +
Sbjct: 61 AEIAATMTTIHPDYAVLAARIAVSNLHKQTTKQYSKVSKDLYEYINPKTGLHSPMISKET 120
Query: 121 YEIIMKNAACLDGAIIXXXXXXXXXXXXKTLERSYLLKMDSRVVERPQHMLMRVSVGIHK 180
Y+IIM++ L+ AI+ KTLERSYLL+++ +V ERPQH++MRV+VGIH
Sbjct: 121 YDIIMEHEDELNSAIVYDRDFNYNYFGFKTLERSYLLRINGKVAERPQHLIMRVAVGIHG 180
Query: 181 DDTDSALKTYHLMSQHWFTHATPTLFNAGTPQPQLSSCFLLCMKDDSIEGIYDTLKKCAI 240
+D ++TY+LMSQ +FTH +P LFNAGTP+PQ+SSCFLL MKDDSIEGIYDTLK CA+
Sbjct: 181 NDIPRVIETYNLMSQRFFTHGSPCLFNAGTPRPQMSSCFLLAMKDDSIEGIYDTLKSCAL 240
Query: 241 ISKSAGGIGLSIHNIRASGSYIHGTNGSSNGIVPMLQVFNDTARYVDQGGGKRKGAFAIY 300
ISKSAGGIGL IHNIR++G+YI GTNG+SNGI+PM++VFN+TARYVDQGG KR GAFA+Y
Sbjct: 241 ISKSAGGIGLHIHNIRSTGAYIAGTNGTSNGIIPMVRVFNNTARYVDQGGNKRPGAFALY 300
Query: 301 LEPWHADIFEFLDLRKNQGKEECRARDLFYALWVPDLFMERVRDDGKWSLFCPSDASGLA 360
LEPWH+DIF+F+D+RKN GKEE RARDLF ALW+PDLFM+RV +G W+LF P++A GLA
Sbjct: 301 LEPWHSDIFDFIDIRKNHGKEEIRARDLFPALWIPDLFMKRVEQNGDWTLFSPNEAPGLA 360
Query: 361 DSWGIEFEHLYSQYEEEGRAKMVISARKLWFEILNSQIETGTPYMLFKDSCNRKSNQQNL 420
D +G EFE LY++YE+E R + I A+KLW+ IL +Q ETGTP+ML+KDSCN KSNQ+NL
Sbjct: 361 DVYGDEFEELYTKYEKENRGRQTIKAQKLWYAILGAQTETGTPFMLYKDSCNNKSNQKNL 420
Query: 421 GTIKSSNLCTEIVEFSSPEETAVCNLASIALPRYVREKGVPVQSNVSKLVGSRDSKNRLF 480
G IKSSNLC EIVE+S+P+E AVCNLASIALP +V D K+ +
Sbjct: 421 GIIKSSNLCCEIVEYSAPDEVAVCNLASIALPSFVEN----------------DEKSTWY 464
Query: 481 DFERLAEVTKIITENLNKIIDVNHYPIETTRRSNLRHRPIGIGIQGLADTFILLGLPFES 540
+F++L +VTK++T NLN++ID NHYP+ RSN+RHRPI +G+QGLAD F+ L LPF+S
Sbjct: 465 NFDKLHQVTKVVTRNLNRVIDRNHYPVPEAERSNMRHRPIALGVQGLADAFMELRLPFDS 524
Query: 541 PEAQQLNKDIFETIYYHALKASAELAVKDGPYETYFGSPMSKGILQVDMWNITPSDRWDW 600
EA++LN IFETIY+ A++AS ELA ++G YETY GSP S+G+LQ D+WN P++ WDW
Sbjct: 525 QEARELNIQIFETIYHAAVEASIELAKEEGAYETYPGSPASQGLLQFDLWNRKPTELWDW 584
Query: 601 SSLREMISKNGVRNSLLVAPMPTASTSQILGNNECFEPYTSNIYTRRVLSGEFIVVNKHL 660
+L++ ++K+G+RNSLLVAPMPTASTSQILGNNECFEPYTSNIY+RRVL+GEF +VN +L
Sbjct: 585 DTLKQDLAKHGMRNSLLVAPMPTASTSQILGNNECFEPYTSNIYSRRVLAGEFQIVNPYL 644
Query: 661 LKDLTELGLWSHALKTKIIYENGSVSKISEIPEELKAIYKTVWEIKQKTLVDMAADRGCY 720
LKDL +LG+W+ A+K+ II NGS+ + IP+E+KA+YKTVWEI QK ++DMAADR +
Sbjct: 645 LKDLVDLGVWNDAMKSSIIANNGSIQALPNIPDEIKALYKTVWEISQKHIIDMAADRAAF 704
Query: 721 IDQSQSLNIHMEQPDHGKLTSLHFYAWSKGMKTGMYYLRTRAAADAIKFTVDTSV 775
IDQSQSLNIH++ P GKLTS+HFY W KG+KTGMYYLRT+AA+ AI+FT+D +
Sbjct: 705 IDQSQSLNIHIKDPTMGKLTSMHFYGWKKGLKTGMYYLRTQAASAAIQFTIDQKI 759
Score = 45 (20.9 bits), Expect = 5.7e-277, Sum P(2) = 5.7e-277
Identities = 9/25 (36%), Positives = 16/25 (64%)
Query: 785 DNDVEANLAQVV-CSLKNQEECMAC 808
+ND+ + A+V+ C++ N E C C
Sbjct: 830 ENDIYS--AKVIACAIDNPESCTMC 852
>UNIPROTKB|Q5A0N3 [details] [associations]
symbol:RNR1 "Ribonucleoside-diphosphate reductase"
species:237561 "Candida albicans SC5314" [GO:0004748
"ribonucleoside-diphosphate reductase activity, thioredoxin
disulfide as acceptor" evidence=NAS] [GO:0009267 "cellular response
to starvation" evidence=IMP] [GO:0030447 "filamentous growth"
evidence=IMP] [GO:0036170 "filamentous growth of a population of
unicellular organisms in response to starvation" evidence=IMP]
[GO:0036180 "filamentous growth of a population of unicellular
organisms in response to biotic stimulus" evidence=IMP] [GO:0071216
"cellular response to biotic stimulus" evidence=IMP]
InterPro:IPR000788 InterPro:IPR008926 InterPro:IPR013346
InterPro:IPR013509 Pfam:PF00317 Pfam:PF02867 PRINTS:PR01183
PROSITE:PS00089 UniPathway:UPA00326 CGD:CAL0001524 Pfam:PF03477
GO:GO:0005524 GO:GO:0071216 GO:GO:0036180 GO:GO:0006260
GO:GO:0009267 GO:GO:0036170 EMBL:AACQ01000088 EMBL:AACQ01000087
KO:K10807 InterPro:IPR005144 PROSITE:PS51161 eggNOG:COG0209
GO:GO:0005971 GO:GO:0004748 SUPFAM:SSF48168 TIGRFAMs:TIGR02506
RefSeq:XP_715255.1 RefSeq:XP_715320.1 ProteinModelPortal:Q5A0N3
SMR:Q5A0N3 STRING:Q5A0N3 GeneID:3642989 GeneID:3643046
KEGG:cal:CaO19.13201 KEGG:cal:CaO19.5779 Uniprot:Q5A0N3
Length = 854
Score = 2641 (934.7 bits), Expect = 5.7e-277, Sum P(2) = 5.7e-277
Identities = 483/775 (62%), Positives = 620/775 (80%)
Query: 1 MYVIKRDGRKEPVRFDKITARLKKLSYGLSKEHCDPVLVAQKVCAGVYKGVTTTQLDELA 60
MYV KRDGRKEPVRFDKITAR+++L YGL+ H +PV + QKV +GVY+GVTT +LD LA
Sbjct: 1 MYVYKRDGRKEPVRFDKITARVQRLCYGLNPNHVEPVAITQKVISGVYQGVTTIELDNLA 60
Query: 61 AETAAAMTVNHPDYALLAGRVAVSNLHKITKNSFSETIKDMYNYYNKRSGKKASLVADDV 120
AE AA MT HPDYA+LA R+AVSNLHK T +S+ KD+Y Y N ++G + +++ +
Sbjct: 61 AEIAATMTTIHPDYAVLAARIAVSNLHKQTTKQYSKVSKDLYEYINPKTGLHSPMISKET 120
Query: 121 YEIIMKNAACLDGAIIXXXXXXXXXXXXKTLERSYLLKMDSRVVERPQHMLMRVSVGIHK 180
Y+IIM++ L+ AI+ KTLERSYLL+++ +V ERPQH++MRV+VGIH
Sbjct: 121 YDIIMEHEDELNSAIVYDRDFNYNYFGFKTLERSYLLRINGKVAERPQHLIMRVAVGIHG 180
Query: 181 DDTDSALKTYHLMSQHWFTHATPTLFNAGTPQPQLSSCFLLCMKDDSIEGIYDTLKKCAI 240
+D ++TY+LMSQ +FTH +P LFNAGTP+PQ+SSCFLL MKDDSIEGIYDTLK CA+
Sbjct: 181 NDIPRVIETYNLMSQRFFTHGSPCLFNAGTPRPQMSSCFLLAMKDDSIEGIYDTLKSCAL 240
Query: 241 ISKSAGGIGLSIHNIRASGSYIHGTNGSSNGIVPMLQVFNDTARYVDQGGGKRKGAFAIY 300
ISKSAGGIGL IHNIR++G+YI GTNG+SNGI+PM++VFN+TARYVDQGG KR GAFA+Y
Sbjct: 241 ISKSAGGIGLHIHNIRSTGAYIAGTNGTSNGIIPMVRVFNNTARYVDQGGNKRPGAFALY 300
Query: 301 LEPWHADIFEFLDLRKNQGKEECRARDLFYALWVPDLFMERVRDDGKWSLFCPSDASGLA 360
LEPWH+DIF+F+D+RKN GKEE RARDLF ALW+PDLFM+RV +G W+LF P++A GLA
Sbjct: 301 LEPWHSDIFDFIDIRKNHGKEEIRARDLFPALWIPDLFMKRVEQNGDWTLFSPNEAPGLA 360
Query: 361 DSWGIEFEHLYSQYEEEGRAKMVISARKLWFEILNSQIETGTPYMLFKDSCNRKSNQQNL 420
D +G EFE LY++YE+E R + I A+KLW+ IL +Q ETGTP+ML+KDSCN KSNQ+NL
Sbjct: 361 DVYGDEFEELYTKYEKENRGRQTIKAQKLWYAILGAQTETGTPFMLYKDSCNNKSNQKNL 420
Query: 421 GTIKSSNLCTEIVEFSSPEETAVCNLASIALPRYVREKGVPVQSNVSKLVGSRDSKNRLF 480
G IKSSNLC EIVE+S+P+E AVCNLASIALP +V D K+ +
Sbjct: 421 GIIKSSNLCCEIVEYSAPDEVAVCNLASIALPSFVEN----------------DEKSTWY 464
Query: 481 DFERLAEVTKIITENLNKIIDVNHYPIETTRRSNLRHRPIGIGIQGLADTFILLGLPFES 540
+F++L +VTK++T NLN++ID NHYP+ RSN+RHRPI +G+QGLAD F+ L LPF+S
Sbjct: 465 NFDKLHQVTKVVTRNLNRVIDRNHYPVPEAERSNMRHRPIALGVQGLADAFMELRLPFDS 524
Query: 541 PEAQQLNKDIFETIYYHALKASAELAVKDGPYETYFGSPMSKGILQVDMWNITPSDRWDW 600
EA++LN IFETIY+ A++AS ELA ++G YETY GSP S+G+LQ D+WN P++ WDW
Sbjct: 525 QEARELNIQIFETIYHAAVEASIELAKEEGAYETYPGSPASQGLLQFDLWNRKPTELWDW 584
Query: 601 SSLREMISKNGVRNSLLVAPMPTASTSQILGNNECFEPYTSNIYTRRVLSGEFIVVNKHL 660
+L++ ++K+G+RNSLLVAPMPTASTSQILGNNECFEPYTSNIY+RRVL+GEF +VN +L
Sbjct: 585 DTLKQDLAKHGMRNSLLVAPMPTASTSQILGNNECFEPYTSNIYSRRVLAGEFQIVNPYL 644
Query: 661 LKDLTELGLWSHALKTKIIYENGSVSKISEIPEELKAIYKTVWEIKQKTLVDMAADRGCY 720
LKDL +LG+W+ A+K+ II NGS+ + IP+E+KA+YKTVWEI QK ++DMAADR +
Sbjct: 645 LKDLVDLGVWNDAMKSSIIANNGSIQALPNIPDEIKALYKTVWEISQKHIIDMAADRAAF 704
Query: 721 IDQSQSLNIHMEQPDHGKLTSLHFYAWSKGMKTGMYYLRTRAAADAIKFTVDTSV 775
IDQSQSLNIH++ P GKLTS+HFY W KG+KTGMYYLRT+AA+ AI+FT+D +
Sbjct: 705 IDQSQSLNIHIKDPTMGKLTSMHFYGWKKGLKTGMYYLRTQAASAAIQFTIDQKI 759
Score = 45 (20.9 bits), Expect = 5.7e-277, Sum P(2) = 5.7e-277
Identities = 9/25 (36%), Positives = 16/25 (64%)
Query: 785 DNDVEANLAQVV-CSLKNQEECMAC 808
+ND+ + A+V+ C++ N E C C
Sbjct: 830 ENDIYS--AKVIACAIDNPESCTMC 852
>SGD|S000000872 [details] [associations]
symbol:RNR1 "Major isoform of large subunit of
ribonucleotide-diphosphate reductase" species:4932 "Saccharomyces
cerevisiae" [GO:0000166 "nucleotide binding" evidence=IEA;IDA]
[GO:0009263 "deoxyribonucleotide biosynthetic process"
evidence=IDA] [GO:0005524 "ATP binding" evidence=IEA] [GO:0005737
"cytoplasm" evidence=IEA;IDA] [GO:0006260 "DNA replication"
evidence=IEA] [GO:0008152 "metabolic process" evidence=IEA]
[GO:0016491 "oxidoreductase activity" evidence=IEA] [GO:0055114
"oxidation-reduction process" evidence=IEA] [GO:0004748
"ribonucleoside-diphosphate reductase activity, thioredoxin
disulfide as acceptor" evidence=IEA;IMP;IDA] [GO:0005971
"ribonucleoside-diphosphate reductase complex" evidence=IEA;IDA]
[GO:0005634 "nucleus" evidence=IDA] [GO:0003824 "catalytic
activity" evidence=IEA] InterPro:IPR000788 InterPro:IPR008926
InterPro:IPR013346 InterPro:IPR013509 Pfam:PF00317 Pfam:PF02867
PRINTS:PR01183 PROSITE:PS00089 UniPathway:UPA00326 SGD:S000000872
Pfam:PF03477 GO:GO:0005524 GO:GO:0000166 GO:GO:0006260
EMBL:BK006939 EMBL:U18813 GO:GO:0009263 KO:K10807
InterPro:IPR005144 PROSITE:PS51161 eggNOG:COG0209 GO:GO:0005971
GO:GO:0004748 SUPFAM:SSF48168 HOGENOM:HOG000057035
TIGRFAMs:TIGR02506 GeneTree:ENSGT00390000001372 OMA:ETIYHAS
OrthoDB:EOG480N4T EMBL:X69216 EMBL:X69217 PIR:S50573
RefSeq:NP_010993.1 PDB:1ZYZ PDB:1ZZD PDB:2CVS PDB:2CVT PDB:2CVU
PDB:2CVV PDB:2CVW PDB:2CVX PDB:2CVY PDB:2EUD PDB:2ZLF PDB:2ZLG
PDB:3K8T PDB:3PAW PDB:3RSR PDB:3S87 PDB:3S8A PDB:3S8B PDB:3S8C
PDB:3TB9 PDB:3TBA PDBsum:1ZYZ PDBsum:1ZZD PDBsum:2CVS PDBsum:2CVT
PDBsum:2CVU PDBsum:2CVV PDBsum:2CVW PDBsum:2CVX PDBsum:2CVY
PDBsum:2EUD PDBsum:2ZLF PDBsum:2ZLG PDBsum:3K8T PDBsum:3PAW
PDBsum:3RSR PDBsum:3S87 PDBsum:3S8A PDBsum:3S8B PDBsum:3S8C
PDBsum:3TB9 PDBsum:3TBA ProteinModelPortal:P21524 SMR:P21524
DIP:DIP-6299N IntAct:P21524 MINT:MINT-680321 STRING:P21524
PaxDb:P21524 PeptideAtlas:P21524 PRIDE:P21524 EnsemblFungi:YER070W
GeneID:856801 KEGG:sce:YER070W CYGD:YER070w
EvolutionaryTrace:P21524 NextBio:983047 Genevestigator:P21524
GermOnline:YER070W Uniprot:P21524
Length = 888
Score = 2639 (934.0 bits), Expect = 7.2e-277, Sum P(2) = 7.2e-277
Identities = 484/785 (61%), Positives = 622/785 (79%)
Query: 1 MYVIKRDGRKEPVRFDKITARLKKLSYGLSKEHCDPVLVAQKVCAGVYKGVTTTQLDELA 60
MYV KRDGRKEPV+FDKITAR+ +L YGL +H D V V Q++ +GVY+GVTT +LD LA
Sbjct: 1 MYVYKRDGRKEPVQFDKITARISRLCYGLDPKHIDAVKVTQRIISGVYEGVTTIELDNLA 60
Query: 61 AETAAAMTVNHPDYALLAGRVAVSNLHKITKNSFSETIKDMYNYYNKRSGKKASLVADDV 120
AET A MT HPDYA LA R+A+SNLHK T FS+ ++D+Y Y N +GK A +++DDV
Sbjct: 61 AETCAYMTTVHPDYATLAARIAISNLHKQTTKQFSKVVEDLYRYVNAATGKPAPMISDDV 120
Query: 121 YEIIMKNAACLDGAIIXXXXXXXXXXXXKTLERSYLLKMDSRVVERPQHMLMRVSVGIHK 180
Y I+M+N L+ AI+ KTLERSYLL+++ +V ERPQH++MRV++GIH
Sbjct: 121 YNIVMENKDKLNSAIVYDRDFQYSYFGFKTLERSYLLRINGQVAERPQHLIMRVALGIHG 180
Query: 181 DDTDSALKTYHLMSQHWFTHATPTLFNAGTPQPQLSSCFLLCMKDDSIEGIYDTLKKCAI 240
D ++AL+TY+LMS +FTHA+PTLFNAGTP+PQ+SSCFL+ MK+DSIEGIYDTLK+CA+
Sbjct: 181 RDIEAALETYNLMSLKYFTHASPTLFNAGTPKPQMSSCFLVAMKEDSIEGIYDTLKECAL 240
Query: 241 ISKSAGGIGLSIHNIRASGSYIHGTNGSSNGIVPMLQVFNDTARYVDQGGGKRKGAFAIY 300
ISK+AGGIGL IHNIR++GSYI GTNG+SNG++PM++VFN+TARYVDQGG KR GAFA+Y
Sbjct: 241 ISKTAGGIGLHIHNIRSTGSYIAGTNGTSNGLIPMIRVFNNTARYVDQGGNKRPGAFALY 300
Query: 301 LEPWHADIFEFLDLRKNQGKEECRARDLFYALWVPDLFMERVRDDGKWSLFCPSDASGLA 360
LEPWHADIF+F+D+RKN GKEE RARDLF ALW+PDLFM+RV ++G W+LF P+ A GL+
Sbjct: 301 LEPWHADIFDFIDIRKNHGKEEIRARDLFPALWIPDLFMKRVEENGTWTLFSPTSAPGLS 360
Query: 361 DSWGIEFEHLYSQYEEEGRAKMVISARKLWFEILNSQIETGTPYMLFKDSCNRKSNQQNL 420
D +G EFE LY++YE+EGR K I A+KLW+ IL +Q ETGTP++++KD+CNRKSNQ+NL
Sbjct: 361 DCYGDEFEALYTRYEKEGRGK-TIKAQKLWYSILEAQTETGTPFVVYKDACNRKSNQKNL 419
Query: 421 GTIKSSNLCTEIVEFSSPEETAVCNLASIALPRYVREKGVPVQSNVSKLVGSRDSKNRLF 480
G IKSSNLC EIVE+S+P+ETAVCNLAS+ALP ++ S D K +
Sbjct: 420 GVIKSSNLCCEIVEYSAPDETAVCNLASVALPAFIET--------------SEDGKTSTY 465
Query: 481 DFERLAEVTKIITENLNKIIDVNHYPIETTRRSNLRHRPIGIGIQGLADTFILLGLPFES 540
+F++L E+ K++T NLN++ID N+YP+E R+SN+RHRPI +G+QGLADTF+LL LPF+S
Sbjct: 466 NFKKLHEIAKVVTRNLNRVIDRNYYPVEEARKSNMRHRPIALGVQGLADTFMLLRLPFDS 525
Query: 541 PEAQQLNKDIFETIYYHALKASAELAVKDGPYETYFGSPMSKGILQVDMWNITPSDRWDW 600
EA+ LN IFETIY+ +++AS ELA KDGPYET+ GSP S+GILQ DMW+ P WDW
Sbjct: 526 EEARLLNIQIFETIYHASMEASCELAQKDGPYETFQGSPASQGILQFDMWDQKPYGMWDW 585
Query: 601 SSLREMISKNGVRNSLLVAPMPTASTSQILGNNECFEPYTSNIYTRRVLSGEFIVVNKHL 660
+LR+ I K+GVRNSL +APMPTASTSQILG NECFEP TSN+Y+RRVLSGEF VVN +L
Sbjct: 586 DTLRKDIMKHGVRNSLTMAPMPTASTSQILGYNECFEPVTSNMYSRRVLSGEFQVVNPYL 645
Query: 661 LKDLTELGLWSHALKTKIIYENGSVSKISEIPEELKAIYKTVWEIKQKTLVDMAADRGCY 720
L+DL +LG+W +K +I +NGS+ + +P+ELK +YKTVWEI QKT+++MAADR Y
Sbjct: 646 LRDLVDLGIWDEGMKQYLITQNGSIQGLPNVPQELKDLYKTVWEISQKTIINMAADRSVY 705
Query: 721 IDQSQSLNIHMEQPDHGKLTSLHFYAWSKGMKTGMYYLRTRAAADAIKFTVDTSVLNNEK 780
IDQS SLN+ + P GKLTS+HFY W KG+KTGMYYLRT+AA+ AI+FT+D + +
Sbjct: 706 IDQSHSLNLFLRAPTMGKLTSMHFYGWKKGLKTGMYYLRTQAASAAIQFTIDQKIADQAT 765
Query: 781 ANRAD 785
N AD
Sbjct: 766 ENVAD 770
Score = 46 (21.3 bits), Expect = 7.2e-277, Sum P(2) = 7.2e-277
Identities = 17/66 (25%), Positives = 25/66 (37%)
Query: 748 SKGMKTGMYYLRTRAAADAIKFTVDTSVLNNEKANRADNDVEA-----NLAQVVCSLKNQ 802
S + GM L + + + V N EKA +D E N + C++ N
Sbjct: 822 SHSLTKGMAELNVQESKVEVP-EVPAPTKNEEKAAPIVDDEETEFDIYNSKVIACAIDNP 880
Query: 803 EECMAC 808
E C C
Sbjct: 881 EACEMC 886
>WB|WBGene00004391 [details] [associations]
symbol:rnr-1 species:6239 "Caenorhabditis elegans"
[GO:0004748 "ribonucleoside-diphosphate reductase activity,
thioredoxin disulfide as acceptor" evidence=IEA] [GO:0005971
"ribonucleoside-diphosphate reductase complex" evidence=IEA]
[GO:0006260 "DNA replication" evidence=IEA] [GO:0055114
"oxidation-reduction process" evidence=IEA] [GO:0005524 "ATP
binding" evidence=IEA] [GO:0009792 "embryo development ending in
birth or egg hatching" evidence=IMP] [GO:0000003 "reproduction"
evidence=IMP] [GO:0040035 "hermaphrodite genitalia development"
evidence=IMP] [GO:0040007 "growth" evidence=IMP] [GO:0002119
"nematode larval development" evidence=IMP] [GO:0040011
"locomotion" evidence=IMP] [GO:0040017 "positive regulation of
locomotion" evidence=IMP] [GO:0006915 "apoptotic process"
evidence=IMP] InterPro:IPR000788 InterPro:IPR008926
InterPro:IPR013346 InterPro:IPR013509 Pfam:PF00317 Pfam:PF02867
PRINTS:PR01183 PROSITE:PS00089 UniPathway:UPA00326 Pfam:PF03477
GO:GO:0005524 GO:GO:0009792 GO:GO:0040007 GO:GO:0006915
GO:GO:0002119 GO:GO:0006260 GO:GO:0040011 GO:GO:0040017
GO:GO:0040035 GO:GO:0009263 KO:K10807 InterPro:IPR005144
PROSITE:PS51161 eggNOG:COG0209 GO:GO:0005971 GO:GO:0004748
SUPFAM:SSF48168 EMBL:Z19158 HOGENOM:HOG000057035 TIGRFAMs:TIGR02506
PIR:S28302 RefSeq:NP_499039.1 ProteinModelPortal:Q03604 SMR:Q03604
DIP:DIP-26889N IntAct:Q03604 MINT:MINT-1080458 STRING:Q03604
PaxDb:Q03604 PRIDE:Q03604 EnsemblMetazoa:T23G5.1.1
EnsemblMetazoa:T23G5.1.2 EnsemblMetazoa:T23G5.1.3 GeneID:176301
KEGG:cel:CELE_T23G5.1 UCSC:T23G5.1.2 CTD:176301 WormBase:T23G5.1
GeneTree:ENSGT00390000001372 InParanoid:Q03604 OMA:YKYGVKT
NextBio:891992 Uniprot:Q03604
Length = 788
Score = 1588 (564.1 bits), Expect = 1.7e-275, Sum P(2) = 1.7e-275
Identities = 304/483 (62%), Positives = 383/483 (79%)
Query: 2 YVIKRDGRKEPVRFDKITARLKKLSYGLSKEHCDPVLVAQKVCAGVYKGVTTTQLDELAA 61
YV+KRDGRKE V FDKIT+R++KLSYGL+ + DPV VA KV +G+YKGVTT +LD LAA
Sbjct: 8 YVVKRDGRKEDVHFDKITSRIQKLSYGLNMDFVDPVAVAIKVISGLYKGVTTVELDNLAA 67
Query: 62 ETAAAMTVNHPDYALLAGRVAVSNLHKITKNSFSETIKDMYNYYNKRSGKKASLVADDVY 121
ETAA+MT HP+YALLA R+AVSNLHK T FSE +K ++ +++ +GK A +++D+ +
Sbjct: 68 ETAASMTTQHPEYALLAARIAVSNLHKKTNKVFSEVMKTLHEFHHPHTGKHAPMISDETW 127
Query: 122 EIIMKNAACLDGAIIXXXXXXXXXXXXKTLERSYLLKMDSRVVERPQHMLMRVSVGIHKD 181
II KNA L+ AI+ KTLERSYLLK++ +VERPQ MLMRVS+GIH D
Sbjct: 128 AIIEKNADKLNSAIVYDRDYSYTYFGFKTLERSYLLKINKEIVERPQQMLMRVSIGIHGD 187
Query: 182 DTDSALKTYHLMSQHWFTHATPTLFNAGTPQPQLSSCFLLCMKDDSIEGIYDTLKKCAII 241
D SA++TY+LMS+ + THA+PTLFN+GT +PQ+SSCFLL M +DSI GIYDTLK+CA+I
Sbjct: 188 DITSAIETYNLMSERYMTHASPTLFNSGTCRPQMSSCFLLTMSEDSILGIYDTLKQCALI 247
Query: 242 SKSAGGIGLSIHNIRASGSYIHGTNGSSNGIVPMLQVFNDTARYVDQGGGKRKGAFAIYL 301
SKSAGGIGL++H IRA+GS I GTNG+SNG++PML+V+N+TARYVDQGG KR GAFAIYL
Sbjct: 248 SKSAGGIGLNVHKIRATGSVIAGTNGTSNGLIPMLRVYNNTARYVDQGGNKRPGAFAIYL 307
Query: 302 EPWHADIFEFLDLRKNQGKEECRARDLFYALWVPDLFMERVRDDGKWSLFCPSDASGLAD 361
EPWHADIFEF+ LRKN G EE RARDLF ALW+PDLFM+RV D +WSL CP + GL D
Sbjct: 308 EPWHADIFEFVSLRKNTGPEEERARDLFLALWIPDLFMKRVEKDQEWSLMCPCECPGLDD 367
Query: 362 SWGIEFEHLYSQYEEEGRAKMVISARKLWFEILNSQIETGTPYMLFKDSCNRKSNQQNLG 421
WG EFE LY++YE EGR + + ARKLW I+++QIETG PY+ +KD+ NRKSNQQNLG
Sbjct: 368 CWGEEFEALYAKYEAEGRVRKTVKARKLWEHIVSNQIETGLPYITYKDAANRKSNQQNLG 427
Query: 422 TIKSSNLCTEIVEFSSPEETAVCNLASIALPRYVR-EKGVP-VQ-SNVSKLVGSRDSKNR 478
TIK SNLCTEI+E+S+P+E AVCNLASIAL RYV EK V+ + V+K++ +R+ N+
Sbjct: 428 TIKCSNLCTEIIEYSAPDEIAVCNLASIALNRYVTPEKKFDFVKLAEVTKVI-TRNL-NK 485
Query: 479 LFD 481
+ D
Sbjct: 486 IID 488
Score = 1084 (386.6 bits), Expect = 1.7e-275, Sum P(2) = 1.7e-275
Identities = 201/329 (61%), Positives = 256/329 (77%)
Query: 480 FDFERLAEVTKIITENLNKIIDVNHYPIETTRRSNLRHRPIGIGIQGLADTFILLGLPFE 539
FDF +LAEVTK+IT NLNKIIDVN+YP+E R SN+RHRPIG+G+QGLAD F+L+ PF
Sbjct: 467 FDFVKLAEVTKVITRNLNKIIDVNYYPVEEARNSNMRHRPIGLGVQGLADCFMLMRYPFT 526
Query: 540 SPEAQQLNKDIFETIYYHALKASAELAVKDGPYETYFGSPMSKGILQVDMWNITPSDRWD 599
S EA+ LNK IFETIYY AL+AS ELA +GPY TY GSP+SKG LQ DMW +TP+D+ D
Sbjct: 527 SAEARDLNKRIFETIYYAALEASCELAELNGPYSTYEGSPVSKGQLQFDMWGVTPTDQCD 586
Query: 600 WSSLREMISKNGVRNSLLVAPMPTASTSQILGNNECFEPYTSNIYTRRVLSGEFIVVNKH 659
W++LR+ I+K+G+RNSLL+APMPTAST+QILGNNE EPYTSNIY+RRVLSG+F +VN H
Sbjct: 587 WATLRKKIAKHGIRNSLLMAPMPTASTAQILGNNESIEPYTSNIYSRRVLSGDFQIVNPH 646
Query: 660 LLKDLTELGLWSHALKTKIIYENGSVSKISEIPEELKAIYKTVWEIKQKTLVDMAADRGC 719
+LKDL E GLW+ +K ++I NGS+ I IP ++K +Y+TVWEI QK +++MAADRG
Sbjct: 647 MLKDLVERGLWTDEMKNRLIANNGSIQNIDGIPSDIKELYRTVWEISQKDIIEMAADRGA 706
Query: 720 YIDQSQSLNIHMEQPDHGKLTSLHFYAWSKGMKTGMYYLRTRAAADAIKFTVDTSVLNNE 779
YIDQSQSLNIHM +P + +TS+HFY W KG+KTGMYYLRT+ A +A++FTVD + L
Sbjct: 707 YIDQSQSLNIHMAKPSYAGITSMHFYGWKKGLKTGMYYLRTKPAVNAVQFTVDKNAL--- 763
Query: 780 KANRADNDVEANLAQVVCSLKNQEECMAC 808
K N+ + A +A+ E C+ C
Sbjct: 764 KTNQ-QAETPATVAE-----SQDEGCLMC 786
>UNIPROTKB|Q03604 [details] [associations]
symbol:rnr-1 "Ribonucleoside-diphosphate reductase large
subunit" species:6239 "Caenorhabditis elegans" [GO:0009263
"deoxyribonucleotide biosynthetic process" evidence=ISS]
[GO:0004748 "ribonucleoside-diphosphate reductase activity,
thioredoxin disulfide as acceptor" evidence=ISS] InterPro:IPR000788
InterPro:IPR008926 InterPro:IPR013346 InterPro:IPR013509
Pfam:PF00317 Pfam:PF02867 PRINTS:PR01183 PROSITE:PS00089
UniPathway:UPA00326 Pfam:PF03477 GO:GO:0005524 GO:GO:0009792
GO:GO:0040007 GO:GO:0006915 GO:GO:0002119 GO:GO:0006260
GO:GO:0040011 GO:GO:0040017 GO:GO:0040035 GO:GO:0009263 KO:K10807
InterPro:IPR005144 PROSITE:PS51161 eggNOG:COG0209 GO:GO:0005971
GO:GO:0004748 SUPFAM:SSF48168 EMBL:Z19158 HOGENOM:HOG000057035
TIGRFAMs:TIGR02506 PIR:S28302 RefSeq:NP_499039.1
ProteinModelPortal:Q03604 SMR:Q03604 DIP:DIP-26889N IntAct:Q03604
MINT:MINT-1080458 STRING:Q03604 PaxDb:Q03604 PRIDE:Q03604
EnsemblMetazoa:T23G5.1.1 EnsemblMetazoa:T23G5.1.2
EnsemblMetazoa:T23G5.1.3 GeneID:176301 KEGG:cel:CELE_T23G5.1
UCSC:T23G5.1.2 CTD:176301 WormBase:T23G5.1
GeneTree:ENSGT00390000001372 InParanoid:Q03604 OMA:YKYGVKT
NextBio:891992 Uniprot:Q03604
Length = 788
Score = 1588 (564.1 bits), Expect = 1.7e-275, Sum P(2) = 1.7e-275
Identities = 304/483 (62%), Positives = 383/483 (79%)
Query: 2 YVIKRDGRKEPVRFDKITARLKKLSYGLSKEHCDPVLVAQKVCAGVYKGVTTTQLDELAA 61
YV+KRDGRKE V FDKIT+R++KLSYGL+ + DPV VA KV +G+YKGVTT +LD LAA
Sbjct: 8 YVVKRDGRKEDVHFDKITSRIQKLSYGLNMDFVDPVAVAIKVISGLYKGVTTVELDNLAA 67
Query: 62 ETAAAMTVNHPDYALLAGRVAVSNLHKITKNSFSETIKDMYNYYNKRSGKKASLVADDVY 121
ETAA+MT HP+YALLA R+AVSNLHK T FSE +K ++ +++ +GK A +++D+ +
Sbjct: 68 ETAASMTTQHPEYALLAARIAVSNLHKKTNKVFSEVMKTLHEFHHPHTGKHAPMISDETW 127
Query: 122 EIIMKNAACLDGAIIXXXXXXXXXXXXKTLERSYLLKMDSRVVERPQHMLMRVSVGIHKD 181
II KNA L+ AI+ KTLERSYLLK++ +VERPQ MLMRVS+GIH D
Sbjct: 128 AIIEKNADKLNSAIVYDRDYSYTYFGFKTLERSYLLKINKEIVERPQQMLMRVSIGIHGD 187
Query: 182 DTDSALKTYHLMSQHWFTHATPTLFNAGTPQPQLSSCFLLCMKDDSIEGIYDTLKKCAII 241
D SA++TY+LMS+ + THA+PTLFN+GT +PQ+SSCFLL M +DSI GIYDTLK+CA+I
Sbjct: 188 DITSAIETYNLMSERYMTHASPTLFNSGTCRPQMSSCFLLTMSEDSILGIYDTLKQCALI 247
Query: 242 SKSAGGIGLSIHNIRASGSYIHGTNGSSNGIVPMLQVFNDTARYVDQGGGKRKGAFAIYL 301
SKSAGGIGL++H IRA+GS I GTNG+SNG++PML+V+N+TARYVDQGG KR GAFAIYL
Sbjct: 248 SKSAGGIGLNVHKIRATGSVIAGTNGTSNGLIPMLRVYNNTARYVDQGGNKRPGAFAIYL 307
Query: 302 EPWHADIFEFLDLRKNQGKEECRARDLFYALWVPDLFMERVRDDGKWSLFCPSDASGLAD 361
EPWHADIFEF+ LRKN G EE RARDLF ALW+PDLFM+RV D +WSL CP + GL D
Sbjct: 308 EPWHADIFEFVSLRKNTGPEEERARDLFLALWIPDLFMKRVEKDQEWSLMCPCECPGLDD 367
Query: 362 SWGIEFEHLYSQYEEEGRAKMVISARKLWFEILNSQIETGTPYMLFKDSCNRKSNQQNLG 421
WG EFE LY++YE EGR + + ARKLW I+++QIETG PY+ +KD+ NRKSNQQNLG
Sbjct: 368 CWGEEFEALYAKYEAEGRVRKTVKARKLWEHIVSNQIETGLPYITYKDAANRKSNQQNLG 427
Query: 422 TIKSSNLCTEIVEFSSPEETAVCNLASIALPRYVR-EKGVP-VQ-SNVSKLVGSRDSKNR 478
TIK SNLCTEI+E+S+P+E AVCNLASIAL RYV EK V+ + V+K++ +R+ N+
Sbjct: 428 TIKCSNLCTEIIEYSAPDEIAVCNLASIALNRYVTPEKKFDFVKLAEVTKVI-TRNL-NK 485
Query: 479 LFD 481
+ D
Sbjct: 486 IID 488
Score = 1084 (386.6 bits), Expect = 1.7e-275, Sum P(2) = 1.7e-275
Identities = 201/329 (61%), Positives = 256/329 (77%)
Query: 480 FDFERLAEVTKIITENLNKIIDVNHYPIETTRRSNLRHRPIGIGIQGLADTFILLGLPFE 539
FDF +LAEVTK+IT NLNKIIDVN+YP+E R SN+RHRPIG+G+QGLAD F+L+ PF
Sbjct: 467 FDFVKLAEVTKVITRNLNKIIDVNYYPVEEARNSNMRHRPIGLGVQGLADCFMLMRYPFT 526
Query: 540 SPEAQQLNKDIFETIYYHALKASAELAVKDGPYETYFGSPMSKGILQVDMWNITPSDRWD 599
S EA+ LNK IFETIYY AL+AS ELA +GPY TY GSP+SKG LQ DMW +TP+D+ D
Sbjct: 527 SAEARDLNKRIFETIYYAALEASCELAELNGPYSTYEGSPVSKGQLQFDMWGVTPTDQCD 586
Query: 600 WSSLREMISKNGVRNSLLVAPMPTASTSQILGNNECFEPYTSNIYTRRVLSGEFIVVNKH 659
W++LR+ I+K+G+RNSLL+APMPTAST+QILGNNE EPYTSNIY+RRVLSG+F +VN H
Sbjct: 587 WATLRKKIAKHGIRNSLLMAPMPTASTAQILGNNESIEPYTSNIYSRRVLSGDFQIVNPH 646
Query: 660 LLKDLTELGLWSHALKTKIIYENGSVSKISEIPEELKAIYKTVWEIKQKTLVDMAADRGC 719
+LKDL E GLW+ +K ++I NGS+ I IP ++K +Y+TVWEI QK +++MAADRG
Sbjct: 647 MLKDLVERGLWTDEMKNRLIANNGSIQNIDGIPSDIKELYRTVWEISQKDIIEMAADRGA 706
Query: 720 YIDQSQSLNIHMEQPDHGKLTSLHFYAWSKGMKTGMYYLRTRAAADAIKFTVDTSVLNNE 779
YIDQSQSLNIHM +P + +TS+HFY W KG+KTGMYYLRT+ A +A++FTVD + L
Sbjct: 707 YIDQSQSLNIHMAKPSYAGITSMHFYGWKKGLKTGMYYLRTKPAVNAVQFTVDKNAL--- 763
Query: 780 KANRADNDVEANLAQVVCSLKNQEECMAC 808
K N+ + A +A+ E C+ C
Sbjct: 764 KTNQ-QAETPATVAE-----SQDEGCLMC 786
>FB|FBgn0011703 [details] [associations]
symbol:RnrL "Ribonucleoside diphosphate reductase large
subunit" species:7227 "Drosophila melanogaster" [GO:0005971
"ribonucleoside-diphosphate reductase complex" evidence=ISS]
[GO:0004748 "ribonucleoside-diphosphate reductase activity,
thioredoxin disulfide as acceptor" evidence=ISS;NAS] [GO:0006260
"DNA replication" evidence=IEA;NAS] [GO:0055114
"oxidation-reduction process" evidence=IEA] [GO:0005524 "ATP
binding" evidence=IEA] [GO:0006919 "activation of cysteine-type
endopeptidase activity involved in apoptotic process" evidence=IMP]
[GO:0042246 "tissue regeneration" evidence=IMP] InterPro:IPR000788
InterPro:IPR008926 InterPro:IPR013346 InterPro:IPR013509
Pfam:PF00317 Pfam:PF02867 PRINTS:PR01183 PROSITE:PS00089
UniPathway:UPA00326 Pfam:PF03477 GO:GO:0005524 EMBL:AE014134
GO:GO:0006260 GO:GO:0006919 GO:GO:0042246 GO:GO:0009263 KO:K10807
InterPro:IPR005144 PROSITE:PS51161 eggNOG:COG0209 GO:GO:0005971
GO:GO:0004748 SUPFAM:SSF48168 TIGRFAMs:TIGR02506
GeneTree:ENSGT00390000001372 OMA:YKYGVKT EMBL:AF132143
EMBL:AY119149 EMBL:U09369 RefSeq:NP_477027.1 UniGene:Dm.3216
ProteinModelPortal:P48591 SMR:P48591 DIP:DIP-19582N
MINT:MINT-829510 STRING:P48591 PaxDb:P48591
EnsemblMetazoa:FBtr0080059 GeneID:34392 KEGG:dme:Dmel_CG5371
CTD:34392 FlyBase:FBgn0011703 InParanoid:P48591 OrthoDB:EOG4XKSNZ
PhylomeDB:P48591 GenomeRNAi:34392 NextBio:788275 Bgee:P48591
GermOnline:CG5371 Uniprot:P48591
Length = 812
Score = 1559 (553.9 bits), Expect = 4.6e-275, Sum P(2) = 4.6e-275
Identities = 294/484 (60%), Positives = 375/484 (77%)
Query: 1 MYVIKRDGRKEPVRFDKITARLKKLSYGLSKEHCDPVLVAQKVCAGVYKGVTTTQLDELA 60
+YVIKRDGR+E V FDKIT+R++KL Y L+ + DPV + +V G+Y GVTT +LD LA
Sbjct: 12 LYVIKRDGRQEEVHFDKITSRIQKLCYNLNMDFVDPVTITLQVINGLYCGVTTQELDNLA 71
Query: 61 AETAAAMTVNHPDYALLAGRVAVSNLHKITKNSFSETIKDMYNYYNKRSGKKASLVADDV 120
AE AA +T NHPDYA+LA R+AVSNLHK TK +FS+ +D+YN+ NK + +K LV++
Sbjct: 72 AEIAAGLTCNHPDYAILAARIAVSNLHKETKKAFSDVFEDLYNHVNKETNQKVPLVSEFH 131
Query: 121 YEIIMKNAACLDGAIIXXXXXXXXXXXXKTLERSYLLKMDSRVVERPQHMLMRVSVGIHK 180
Y ++ KNA L+ +II KTLERSYLLK + ++ ERPQHMLMRV++GIH
Sbjct: 132 YNVVKKNATRLNSSIIYDRDFGYNYFGFKTLERSYLLKRNGKIAERPQHMLMRVAIGIHG 191
Query: 181 DDTDSALKTYHLMSQHWFTHATPTLFNAGTPQPQLSSCFLLCMKDDSIEGIYDTLKKCAI 240
+D D+A++TY+L+S+ +FTHA+PTLF A T +PQLSSCFLL M DSIEGI+ ++++CA+
Sbjct: 192 EDIDAAVETYNLLSERYFTHASPTLFAAATNRPQLSSCFLLTMTADSIEGIFKSVEQCAM 251
Query: 241 ISKSAGGIGLSIHNIRASGSYIHGTNGSSNGIVPMLQVFNDTARYVDQGGGKRKGAFAIY 300
ISKSAGGIGL++H IRA G+ I GTNG+SNG+VPML+VFN+ ARYVDQGGGKR GAFAIY
Sbjct: 252 ISKSAGGIGLNVHCIRAKGTSICGTNGTSNGLVPMLRVFNNVARYVDQGGGKRPGAFAIY 311
Query: 301 LEPWHADIFEFLDLRKNQGKEECRARDLFYALWVPDLFMERVRDDGKWSLFCPSDASGLA 360
LEPWH+D+FEFL+L+KN GKEE RARDLFYALW+PDLFM+RV +G WSL CP GL
Sbjct: 312 LEPWHSDVFEFLELKKNTGKEENRARDLFYALWIPDLFMKRVEANGDWSLMCPHKCPGLH 371
Query: 361 DSWGIEFEHLYSQYEEEGRAKMVISARKLWFEILNSQIETGTPYMLFKDSCNRKSNQQNL 420
D WG EFE LY +YE+EGRA + A+ LWF I+ +Q+ETG PYMLFKD+CNRKSNQQN+
Sbjct: 372 DVWGDEFEKLYEKYEQEGRANRTVKAQSLWFAIIEAQVETGNPYMLFKDACNRKSNQQNV 431
Query: 421 GTIKSSNLCTEIVEFSSPEETAVCNLASIALPRYVR-EKGVPVQS--NVSKLVGSRDSKN 477
GTIK SNLCTEIVE+S+P+E AVCNLASIAL +V EK + V+K+V + N
Sbjct: 432 GTIKCSNLCTEIVEYSAPDEIAVCNLASIALNMFVTPEKTYDFKKLKEVTKIVTK--NLN 489
Query: 478 RLFD 481
++ D
Sbjct: 490 KIID 493
Score = 1109 (395.4 bits), Expect = 4.6e-275, Sum P(2) = 4.6e-275
Identities = 207/343 (60%), Positives = 264/343 (76%)
Query: 478 RLFDFERLAEVTKIITENLNKIIDVNHYPIETTRRSNLRHRPIGIGIQGLADTFILLGLP 537
+ +DF++L EVTKI+T+NLNKIID+N+YP+ R+SNLRHRP+GIGIQG AD IL+ P
Sbjct: 470 KTYDFKKLKEVTKIVTKNLNKIIDINYYPLPEARKSNLRHRPVGIGIQGFADALILMRFP 529
Query: 538 FESPEAQQLNKDIFETIYYHALKASAELAVKDGPYETYFGSPMSKGILQVDMWNITPSDR 597
+ES EA LN+ IFETIYY AL+AS ELA +GPYETY GSP+SKGILQ DMW+ P++
Sbjct: 530 YESEEAGLLNQQIFETIYYGALEASCELAQTEGPYETYEGSPVSKGILQYDMWDKVPTNL 589
Query: 598 WDWSSLREMISKNGVRNSLLVAPMPTASTSQILGNNECFEPYTSNIYTRRVLSGEFIVVN 657
WDW L+E I +GVRNSLLVAPMPTAST+QI+GNNE FEPYT+NIYTRRVLSGEF VVN
Sbjct: 590 WDWQKLKESIRMHGVRNSLLVAPMPTASTAQIMGNNESFEPYTTNIYTRRVLSGEFQVVN 649
Query: 658 KHLLKDLTELGLWSHALKTKIIYENGSVSKISEIPEELKAIYKTVWEIKQKTLVDMAADR 717
HLL+DLTEL LW +K +II GS+ I IP +++ +YKTVWEI K+ + MAADR
Sbjct: 650 HHLLRDLTELDLWDDDMKNQIISSRGSIQNIETIPPKVRDLYKTVWEISVKSTIKMAADR 709
Query: 718 GCYIDQSQSLNIHMEQPDHGKLTSLHFYAWSKGMKTGMYYLRTRAAADAIKFTVDTSV-- 775
G +IDQSQS NIH+ +P++GKLTS+HFY+W G+KTGMYYLRT+ AA+AI+FTV+
Sbjct: 710 GAFIDQSQSFNIHVAEPNYGKLTSIHFYSWKAGLKTGMYYLRTKPAANAIQFTVNKKQGA 769
Query: 776 --LNNEKAN------RADNDVEANLAQVVCSLKNQEECMACGS 810
+N + + + D E +A +VCSL+N++ CM+CGS
Sbjct: 770 VSMNGQNGTAEGSPQKYEEDRERKMADMVCSLENKDACMSCGS 812
Score = 40 (19.1 bits), Expect = 5.2e-162, Sum P(2) = 5.2e-162
Identities = 12/44 (27%), Positives = 23/44 (52%)
Query: 592 ITPSDRWDWSSLREM---ISKNGVRNSLL---VAPMPTASTSQI 629
+TP +D+ L+E+ ++KN N ++ P+P A S +
Sbjct: 466 VTPEKTYDFKKLKEVTKIVTKN--LNKIIDINYYPLPEARKSNL 507
>SGD|S000001328 [details] [associations]
symbol:RNR3 "Minor isoform of the large subunit of the RNR
complex" species:4932 "Saccharomyces cerevisiae" [GO:0000166
"nucleotide binding" evidence=IEA] [GO:0009263 "deoxyribonucleotide
biosynthetic process" evidence=IDA] [GO:0005524 "ATP binding"
evidence=IEA] [GO:0005737 "cytoplasm" evidence=IEA;IDA] [GO:0006260
"DNA replication" evidence=IEA] [GO:0008152 "metabolic process"
evidence=IEA] [GO:0016491 "oxidoreductase activity" evidence=IEA]
[GO:0055114 "oxidation-reduction process" evidence=IEA] [GO:0005971
"ribonucleoside-diphosphate reductase complex" evidence=IEA;TAS]
[GO:0005739 "mitochondrion" evidence=IDA] [GO:0004748
"ribonucleoside-diphosphate reductase activity, thioredoxin
disulfide as acceptor" evidence=IEA;IDA] [GO:0003824 "catalytic
activity" evidence=IEA] InterPro:IPR000788 InterPro:IPR008926
InterPro:IPR013346 InterPro:IPR013509 Pfam:PF00317 Pfam:PF02867
PRINTS:PR01183 PROSITE:PS00089 UniPathway:UPA00326 Pfam:PF03477
SGD:S000001328 GO:GO:0005739 GO:GO:0005524 GO:GO:0006260
EMBL:BK006942 EMBL:Z38060 GO:GO:0009263 RefSeq:NP_012198.3
GeneID:854744 KEGG:sce:YIL066C KO:K10807 InterPro:IPR005144
PROSITE:PS51161 eggNOG:COG0209 GO:GO:0005971 GO:GO:0004748
SUPFAM:SSF48168 HOGENOM:HOG000057035 TIGRFAMs:TIGR02506
GeneTree:ENSGT00390000001372 OrthoDB:EOG480N4T EMBL:M58012
PIR:S48413 RefSeq:NP_012204.3 ProteinModelPortal:P21672 SMR:P21672
DIP:DIP-2563N IntAct:P21672 MINT:MINT-425113 STRING:P21672
PaxDb:P21672 PeptideAtlas:P21672 PRIDE:P21672 EnsemblFungi:YIL066C
GeneID:854750 KEGG:sce:YIL060W CYGD:YIL066c OMA:RTPFICQ
NextBio:977464 Genevestigator:P21672 GermOnline:YIL066C
Uniprot:P21672
Length = 869
Score = 2631 (931.2 bits), Expect = 1.2e-273, P = 1.2e-273
Identities = 485/775 (62%), Positives = 612/775 (78%)
Query: 1 MYVIKRDGRKEPVRFDKITARLKKLSYGLSKEHCDPVLVAQKVCAGVYKGVTTTQLDELA 60
MYVIKRDGRKEPV+FDKIT+R+ +LSYGL D V V Q++ +GVY GVTT +LD LA
Sbjct: 1 MYVIKRDGRKEPVQFDKITSRITRLSYGLDPNRIDAVKVTQRIISGVYSGVTTVELDNLA 60
Query: 61 AETAAAMTVNHPDYALLAGRVAVSNLHKITKNSFSETIKDMYNYYNKRSGKKASLVADDV 120
AET A MT HPDYA LA R+A+SNLHK T FS+ I+D++++ N +GK A +++D++
Sbjct: 61 AETCAYMTTVHPDYATLAARIAISNLHKQTTKQFSKVIEDLHDWINPATGKHAPMISDEI 120
Query: 121 YEIIMKNAACLDGAIIXXXXXXXXXXXXKTLERSYLLKMDSRVVERPQHMLMRVSVGIHK 180
Y I+M+N L+ AI+ KTLERSYLL+++ V ERPQH++MRV++GIH
Sbjct: 121 YNIVMENKDTLNSAIVYDRDFQYTYFGFKTLERSYLLRLNGEVAERPQHLVMRVALGIHG 180
Query: 181 DDTDSALKTYHLMSQHWFTHATPTLFNAGTPQPQLSSCFLLCMKDDSIEGIYDTLKKCAI 240
D +S LKTY+LMS +FTHA+PTLFNAGTP PQ+SSCFL+ MKDDSIEGIYDTLK+CA+
Sbjct: 181 SDIESVLKTYNLMSLRYFTHASPTLFNAGTPHPQMSSCFLIAMKDDSIEGIYDTLKECAM 240
Query: 241 ISKSAGGIGLSIHNIRASGSYIHGTNGSSNGIVPMLQVFNDTARYVDQGGGKRKGAFAIY 300
ISK+AGG+GL I+NIR++GSYI GTNG+SNG++PM++VFN+TARYVDQGG KR GAFA++
Sbjct: 241 ISKTAGGVGLHINNIRSTGSYIAGTNGTSNGLIPMIRVFNNTARYVDQGGNKRPGAFALF 300
Query: 301 LEPWHADIFEFLDLRKNQGKEECRARDLFYALWVPDLFMERVRDDGKWSLFCPSDASGLA 360
LEPWHADIF+F+D+RK GKEE RARDLF ALW+PDLFM+RV++DG W+LF PS A GL
Sbjct: 301 LEPWHADIFDFVDIRKTHGKEEIRARDLFPALWIPDLFMKRVQEDGPWTLFSPSAAPGLD 360
Query: 361 DSWGIEFEHLYSQYEEEGRAKMVISARKLWFEILNSQIETGTPYMLFKDSCNRKSNQQNL 420
D WG EFE LY++YE EGR K I A+KLW+ IL +Q ETGTP+M++KD+CNRK+NQQNL
Sbjct: 361 DVWGDEFEELYTRYEREGRGK-TIKAQKLWYAILQAQTETGTPFMVYKDACNRKTNQQNL 419
Query: 421 GTIKSSNLCTEIVEFSSPEETAVCNLASIALPRYVREKGVPVQSNVSKLVGSRDSKNRLF 480
GTIKSSNLC EIVE+SSP+ETAVCNLASIALP +V S D K +
Sbjct: 420 GTIKSSNLCCEIVEYSSPDETAVCNLASIALPAFVEV--------------SEDGKTASY 465
Query: 481 DFERLAEVTKIITENLNKIIDVNHYPIETTRRSNLRHRPIGIGIQGLADTFILLGLPFES 540
+FERL E+ K+IT NLN++ID N+YP+ R SN++HRPI +G+QGLADT+++L LPFES
Sbjct: 466 NFERLHEIAKVITHNLNRVIDRNYYPVPEARNSNMKHRPIALGVQGLADTYMMLRLPFES 525
Query: 541 PEAQQLNKDIFETIYYHALKASAELAVKDGPYETYFGSPMSKGILQVDMWNITPSDRWDW 600
EAQ LNK IFETIY+ L+AS ELA K+G Y T+ GSP SKGILQ DMWN P WDW
Sbjct: 526 EEAQTLNKQIFETIYHATLEASCELAQKEGKYSTFEGSPASKGILQFDMWNAKPFGMWDW 585
Query: 601 SSLREMISKNGVRNSLLVAPMPTASTSQILGNNECFEPYTSNIYTRRVLSGEFIVVNKHL 660
+LR+ I K+G+RNSL +APMPTASTSQILG NECFEP TSN+Y+RRVLSGEF VVN +L
Sbjct: 586 ETLRKDIVKHGLRNSLTMAPMPTASTSQILGYNECFEPVTSNMYSRRVLSGEFQVVNPYL 645
Query: 661 LKDLTELGLWSHALKTKIIYENGSVSKISEIPEELKAIYKTVWEIKQKTLVDMAADRGCY 720
L+DL +LG+W ++K +I +NGS+ + +P+ELK +YKTVWEI QKT+++MAADR Y
Sbjct: 646 LRDLVDLGIWDDSMKQYLITQNGSIQGLPNVPQELKELYKTVWEISQKTIINMAADRAIY 705
Query: 721 IDQSQSLNIHMEQPDHGKLTSLHFYAWSKGMKTGMYYLRTRAAADAIKFTVDTSV 775
IDQS SLN+ ++ P GK+TS+HFY W KG+KTGMYYLRT+AA+ AI+FT+D V
Sbjct: 706 IDQSHSLNLFLQAPSMGKITSMHFYGWKKGLKTGMYYLRTQAASAAIQFTIDQEV 760
>DICTYBASE|DDB_G0284071 [details] [associations]
symbol:rnrA "ribonucleoside-diphosphate reductase"
species:44689 "Dictyostelium discoideum" [GO:0005515 "protein
binding" evidence=IPI] [GO:0055114 "oxidation-reduction process"
evidence=IEA] [GO:0006260 "DNA replication" evidence=IEA;ISS]
[GO:0005971 "ribonucleoside-diphosphate reductase complex"
evidence=IEA;ISS] [GO:0005524 "ATP binding" evidence=IEA]
[GO:0004748 "ribonucleoside-diphosphate reductase activity,
thioredoxin disulfide as acceptor" evidence=IEA;ISS] [GO:0009263
"deoxyribonucleotide biosynthetic process" evidence=ISS]
[GO:0009186 "deoxyribonucleoside diphosphate metabolic process"
evidence=ISS] [GO:0005737 "cytoplasm" evidence=IEA;ISS] [GO:0016491
"oxidoreductase activity" evidence=IEA] [GO:0008152 "metabolic
process" evidence=IEA] [GO:0003824 "catalytic activity"
evidence=IEA] [GO:0000166 "nucleotide binding" evidence=IEA]
InterPro:IPR000788 InterPro:IPR008926 InterPro:IPR013346
InterPro:IPR013509 Pfam:PF00317 Pfam:PF02867 PRINTS:PR01183
UniPathway:UPA00326 dictyBase:DDB_G0284071 Pfam:PF03477
GO:GO:0005524 GenomeReviews:CM000153_GR GO:GO:0006260
EMBL:AAFI02000063 GO:GO:0009263 KO:K10807 InterPro:IPR005144
PROSITE:PS51161 eggNOG:COG0209 GO:GO:0005971 GO:GO:0004748
SUPFAM:SSF48168 TIGRFAMs:TIGR02506 OMA:YKYGVKT RefSeq:XP_638726.1
HSSP:P21524 ProteinModelPortal:Q54Q71 SMR:Q54Q71 STRING:Q54Q71
EnsemblProtists:DDB0230075 GeneID:8624396 KEGG:ddi:DDB_G0284071
ProtClustDB:CLSZ2429164 GO:GO:0009186 Uniprot:Q54Q71
Length = 870
Score = 2597 (919.2 bits), Expect = 6.0e-273, Sum P(2) = 6.0e-273
Identities = 489/795 (61%), Positives = 621/795 (78%)
Query: 1 MYVIKRDGRKEPVRFDKITARLK---KLSYGLSKEHCDPVLVAQKVCAGVYKGVTTTQLD 57
MYV+KRDG KE V FDKIT+R+ ++ L+ + DP+ VAQKV +GV+ GV TT+LD
Sbjct: 16 MYVVKRDGTKENVSFDKITSRISFLCEMEPKLNSDIVDPIEVAQKVVSGVFPGVKTTELD 75
Query: 58 ELAAETAAAMTVNHPDYALLAGRVAVSNLHKITKNSFSETIKDMYNYYNKRSGKKASLVA 117
LAAETAA M+ HPDY +LA R++VSNLHK T SF ET+K Y + N +S A LV+
Sbjct: 76 NLAAETAAYMSTRHPDYGILAARISVSNLHKQTSKSFVETVKKQYEFINPKSNLLAPLVS 135
Query: 118 DDVYEIIMKNAACLDGAIIXXXXXXXXXXXXKTLERSYLLKMDSRVVERPQHMLMRVSVG 177
++YEI+MK+ L+ I KTLERSYL +++ ++VERPQHMLMRVS+G
Sbjct: 136 KELYEIVMKHGERLESVIDYYRDFDYDFFGFKTLERSYLHRINGKIVERPQHMLMRVSIG 195
Query: 178 IHKDDTDSALKTYHLMSQHWFTHATPTLFNAGTPQPQLSSCFLLCMKDDSIEGIYDTLKK 237
IH +D +SA+ TY +S+ FTHATPTLFNAGTP PQ+SSCFL+ MK+DSI+GIYDTLK+
Sbjct: 196 IHGEDLESAINTYKRLSEKLFTHATPTLFNAGTPSPQMSSCFLVQMKEDSIDGIYDTLKQ 255
Query: 238 CAIISKSAGGIGLSIHNIRASGSYIHGTNGSSNGIVPMLQVFNDTARYVDQGGGKRKGAF 297
CA+ISKSAGGIG+++H IRA+ SYI GTNG+SNG+VPML+VFNDTARYVDQGGGKRKGAF
Sbjct: 256 CALISKSAGGIGIAVHKIRAAQSYIRGTNGTSNGLVPMLRVFNDTARYVDQGGGKRKGAF 315
Query: 298 AIYLEPWHADIFEFLDLRKNQGKEECRARDLFYALWVPDLFMERVRDDGKWSLFCPSDAS 357
A+YLEPWHAD+FEF+DL+KN GKEE RARDLFYALWV D+FMERV +G W+LFCP++A
Sbjct: 316 AVYLEPWHADVFEFIDLKKNTGKEEMRARDLFYALWVSDIFMERVEQNGDWALFCPNEAP 375
Query: 358 GLADSWGIEFEHLYSQYEEE-GRAKMVISARKLWFEILNSQIETGTPYMLFKDSCNRKSN 416
GLA++ E LY +YE + VI A++LWF I+ SQ+ETGTP++L+KD+CN KSN
Sbjct: 376 GLAETHSEEHRALYLKYEATPDLPRRVIKAQELWFAIMESQVETGTPFILYKDACNAKSN 435
Query: 417 QQNLGTIKSSNLCTEIVEFSSPEETAVCNLASIALPRYVREKGVPVQSNVSKLVGSRDSK 476
Q+NLGTI SSNLCTEI++++SP+E AVCNLASIALP++VR+K VGS D K
Sbjct: 436 QKNLGTISSSNLCTEIIQYTSPDEIAVCNLASIALPKFVRQK-----------VGSTDPK 484
Query: 477 NRLFDFERLAEVTKIITENLNKIIDVNHYPIETTRRSNLRHRPIGIGIQGLADTFILLGL 536
+ FD + L E+TK+IT NLN IID N+YP+ + SNLRHRPIGIGIQGLAD FI + +
Sbjct: 485 EKEFDHQFLFEITKLITVNLNVIIDRNYYPVAEAKTSNLRHRPIGIGIQGLADVFIKMRM 544
Query: 537 PFESPEAQQLNKDIFETIYYHALKASAELAVKDGPYETYFGSPMSKGILQVDMWNITPSD 596
PF+S A +LN +I ETIY+ AL AS ELA++DG YE++ GSP SKGILQ DMWN+TPS
Sbjct: 545 PFDSVAAAKLNVEIAETIYFAALTASHELAIRDGTYESFKGSPASKGILQFDMWNVTPSS 604
Query: 597 RWDWSSLRE-MISKNGVRNSLLVAPMPTASTSQILGNNECFEPYTSNIYTRRVLSGEFIV 655
RW+W+ L++ +++K G+RNSLL+APMPTASTSQILGNNECFEPYTSNIY+RRVL+GEF +
Sbjct: 605 RWNWAELKDNIVNKGGLRNSLLIAPMPTASTSQILGNNECFEPYTSNIYSRRVLAGEFTI 664
Query: 656 VNKHLLKDLTELGLWSHALKTKIIYENGSVSKISEIPEELKAIYKTVWEIKQKTLVDMAA 715
VNK LL+DL ELG+WS +K +I+ GS+ I IP++LK +YKTVWEI+Q+TL+DMAA
Sbjct: 665 VNKQLLEDLMELGIWSPEMKNQIVAARGSIQSIGGIPDDLKELYKTVWEIRQRTLIDMAA 724
Query: 716 DRGCYIDQSQSLNIHMEQPDHGKLTSLHFYAWSKGMKTGMYYLRTRAAADAIKFTVDTSV 775
DRG +IDQSQS N+ + +P KLTS+HFY+W KG+KTGMYYLRTR AADAI+FTVD V
Sbjct: 725 DRGAFIDQSQSFNVFIAEPTFAKLTSMHFYSWKKGLKTGMYYLRTRPAADAIQFTVDPIV 784
Query: 776 LNNEKANRADNDVEA 790
K +N++ +
Sbjct: 785 SQTPKP--VENNINS 797
Score = 51 (23.0 bits), Expect = 6.0e-273, Sum P(2) = 6.0e-273
Identities = 12/52 (23%), Positives = 23/52 (44%)
Query: 760 TRAAADAIKFTVDTSVLNNEKANRADNDVEANLAQVV-CSLKNQEECMACGS 810
T I+F + ++ + N+ E +LA + + +E C+ CGS
Sbjct: 819 TNNLTSPIRFNITQQQQQQQQQQQQQNNNEDDLANYDGMTCRREEGCLVCGS 870
>UNIPROTKB|E1C4Q0 [details] [associations]
symbol:E1C4Q0 "Ribonucleoside-diphosphate reductase"
species:9031 "Gallus gallus" [GO:0005524 "ATP binding"
evidence=IEA] [GO:0005971 "ribonucleoside-diphosphate reductase
complex" evidence=IEA] [GO:0004748 "ribonucleoside-diphosphate
reductase activity, thioredoxin disulfide as acceptor"
evidence=IEA] [GO:0006260 "DNA replication" evidence=IEA]
[GO:0009263 "deoxyribonucleotide biosynthetic process"
evidence=IEA] [GO:0051290 "protein heterotetramerization"
evidence=IEA] InterPro:IPR000788 InterPro:IPR008926
InterPro:IPR013346 InterPro:IPR013509 Pfam:PF00317 Pfam:PF02867
PRINTS:PR01183 UniPathway:UPA00326 Pfam:PF03477 GO:GO:0005524
GO:GO:0006260 GO:GO:0051290 GO:GO:0009263 InterPro:IPR005144
PROSITE:PS51161 GO:GO:0005971 GO:GO:0004748 SUPFAM:SSF48168
OMA:PQARNSN TIGRFAMs:TIGR02506 GeneTree:ENSGT00390000001372
EMBL:AADN02055234 EMBL:AADN02055235 EMBL:AADN02055236
IPI:IPI00580561 Ensembl:ENSGALT00000028034 Uniprot:E1C4Q0
Length = 784
Score = 1632 (579.6 bits), Expect = 5.3e-272, Sum P(2) = 5.3e-272
Identities = 300/455 (65%), Positives = 370/455 (81%)
Query: 1 MYVIKRDGRKEPVRFDKITARLKKLSYGLSKEHCDPVLVAQKVCAGVYKGVTTTQLDELA 60
M+V+KRDGR+E V FDKIT+R++KL YGL+ + DP + KV G+Y GVTT +LD LA
Sbjct: 1 MHVVKRDGRQERVMFDKITSRIQKLCYGLNADFVDPAQITMKVIQGLYSGVTTVELDTLA 60
Query: 61 AETAAAMTVNHPDYALLAGRVAVSNLHKITKNSFSETIKDMYNYYNKRSGKKASLVADDV 120
AETAA +T HPDYA+LA R+AVSNLHK TK FS+ + D+YNY N +GK + +++ +
Sbjct: 61 AETAATLTTKHPDYAILAARIAVSNLHKETKKVFSDVMDDLYNYINPHNGKHSPMISKET 120
Query: 121 YEIIMKNAACLDGAIIXXXXXXXXXXXXKTLERSYLLKMDSRVVERPQHMLMRVSVGIHK 180
+I++ N L+ AII KTLERSYLLK++S+V ERPQHMLMRV+VGIHK
Sbjct: 121 LDIVLANKDRLNSAIIYDRDFSYNYFGFKTLERSYLLKINSKVAERPQHMLMRVAVGIHK 180
Query: 181 DDTDSALKTYHLMSQHWFTHATPTLFNAGTPQPQLSSCFLLCMKDDSIEGIYDTLKKCAI 240
+D D+A++TY+L+S+ WFTHA+PTLFNAGT +PQLSSCFLLCMKDDSIEGIYDTLK+CA+
Sbjct: 181 NDIDAAIETYNLLSERWFTHASPTLFNAGTNRPQLSSCFLLCMKDDSIEGIYDTLKQCAL 240
Query: 241 ISKSAGGIGLSIHNIRASGSYIHGTNGSSNGIVPMLQVFNDTARYVDQGGGKRKGAFAIY 300
ISKSAGGIGL++ IRA+GSYI GTNG+SNG+VPML+V+N+TARYVDQGG KR GAFAIY
Sbjct: 241 ISKSAGGIGLAVSCIRATGSYIAGTNGNSNGLVPMLRVYNNTARYVDQGGNKRPGAFAIY 300
Query: 301 LEPWHADIFEFLDLRKNQGKEECRARDLFYALWVPDLFMERVRDDGKWSLFCPSDASGLA 360
LEPWH DIFEFLDL+KN GKEE RARDLF+ALW+PDLFM+RV + WSL CP++ GL
Sbjct: 301 LEPWHLDIFEFLDLKKNTGKEEQRARDLFFALWIPDLFMKRVETNQDWSLMCPNECPGLD 360
Query: 361 DSWGIEFEHLYSQYEEEGRAKMVISARKLWFEILNSQIETGTPYMLFKDSCNRKSNQQNL 420
+ WG EFE LY YE++GR + V+ A++LW+ I+ SQ ETGTPYML+KDSCNRKSNQQNL
Sbjct: 361 EVWGEEFEKLYESYEKQGRVRRVVKAQQLWYAIIESQTETGTPYMLYKDSCNRKSNQQNL 420
Query: 421 GTIKSSNLCTEIVEFSSPEETAVCNLASIALPRYV 455
GTIK SNLCTEIVE++S +E AVCNLASIAL YV
Sbjct: 421 GTIKCSNLCTEIVEYTSKDEVAVCNLASIALNMYV 455
Score = 1007 (359.5 bits), Expect = 5.3e-272, Sum P(2) = 5.3e-272
Identities = 200/371 (53%), Positives = 259/371 (69%)
Query: 441 TAVCNLASIALPRYVREKGVPVQSNVSKLVGSRDSKNRLFDFERLAEVTKIITENLNKII 500
T C+ + Y + V V + S + + +DF++LAEVTK+I NLNKII
Sbjct: 422 TIKCSNLCTEIVEYTSKDEVAVCNLASIALNMYVTSEHTYDFKKLAEVTKVIVRNLNKII 481
Query: 501 DVNHYPIETTRRSNLRHRPIGIGIQGLADTFILLGLPFESPEAQQLNKDIFETIYYHALK 560
D+N+YP+ RSN RHRPIGIG+QGLAD FIL+ PFESPEAQ+LN+ IFETIYY AL+
Sbjct: 482 DINYYPVPEAERSNRRHRPIGIGVQGLADAFILMRFPFESPEAQRLNQQIFETIYYGALE 541
Query: 561 ASAELAVKDGPYETYFGSPMSKGILQVDMWNITPSDRWDWSSLREMISKNGVRNSLLVAP 620
AS ELA + GPYETY GSP+SKGILQ DMWN+TPSD WDW +L+E I+ NG + L
Sbjct: 542 ASCELAEQQGPYETYEGSPVSKGILQYDMWNVTPSDLWDWKALKEKIA-NGWLSLFLWLH 600
Query: 621 MPTASTSQILGNNECF-EPYTSNIYTRRVLSGEFIVVNKHLLKDLTELGLWSHALKTKII 679
A + + C E S+++ EF VVN HLLKDLTE GLW+ +K +II
Sbjct: 601 TGCAHPLGSVLTDFCVCELRISDLFL------EFHVVNPHLLKDLTERGLWNEEMKNQII 654
Query: 680 YENGSVSKISEIPEELKAIYKTVWEIKQKTLVDMAADRGCYIDQSQSLNIHMEQPDHGKL 739
NGS+ ISEIP +LK +YKTVWEI QKT++ MAADRG +IDQSQSLNIH+ +P++GKL
Sbjct: 655 AHNGSIQNISEIPADLKQLYKTVWEISQKTVLKMAADRGAFIDQSQSLNIHIAEPNYGKL 714
Query: 740 TSLHFYAWSKGMKTGMYYLRTRAAADAIKFTVDTSVLNNEKANRADNDVEANLAQVVCSL 799
TS+HFY W +G+KTGMYYLRT+ AA+ I+FT++ L E+ ++ + E N A +VCSL
Sbjct: 715 TSMHFYGWKQGLKTGMYYLRTKPAANPIQFTLNKEKLR-EREKASEEEKERNKAAMVCSL 773
Query: 800 KNQEECMACGS 810
+N++ECM CGS
Sbjct: 774 ENRDECMMCGS 784
>UNIPROTKB|P50648 [details] [associations]
symbol:RNR1 "Ribonucleoside-diphosphate reductase large
subunit" species:57267 "Plasmodium falciparum Dd2" [GO:0004748
"ribonucleoside-diphosphate reductase activity, thioredoxin
disulfide as acceptor" evidence=ISS] [GO:0009263
"deoxyribonucleotide biosynthetic process" evidence=ISS]
InterPro:IPR000788 InterPro:IPR008926 InterPro:IPR013346
InterPro:IPR013509 Pfam:PF00317 Pfam:PF02867 PRINTS:PR01183
PROSITE:PS00089 UniPathway:UPA00326 Pfam:PF03477 GO:GO:0005524
GO:GO:0006260 GO:GO:0009263 InterPro:IPR005144 PROSITE:PS51161
eggNOG:COG0209 GO:GO:0005971 GO:GO:0004748 SUPFAM:SSF48168
TIGRFAMs:TIGR02506 EMBL:U01323 ProteinModelPortal:P50648 SMR:P50648
Uniprot:P50648
Length = 806
Score = 1511 (537.0 bits), Expect = 3.1e-267, Sum P(2) = 3.1e-267
Identities = 277/455 (60%), Positives = 357/455 (78%)
Query: 1 MYVIKRDGRKEPVRFDKITARLKKLSYGLSKEHCDPVLVAQKVCAGVYKGVTTTQLDELA 60
MYV+ R G +E + FD+I R+++LSYGL E DP V Q V G+Y G+ T +LDELA
Sbjct: 1 MYVLNRKGEEEDISFDQILKRIQRLSYGLH-ELVDPARVTQGVINGMYSGIKTCELDELA 59
Query: 61 AETAAAMTVNHPDYALLAGRVAVSNLHKITKNSFSETIKDMYNYYNKRSGKKASLVADDV 120
A+T A M HPD+++LA R+ NLHK T + +E + +Y Y + R G+ ASL++ +V
Sbjct: 60 AQTCAYMATTHPDFSILAARITTDNLHKNTSDDVAEVAEALYTYKDVR-GRPASLISKEV 118
Query: 121 YEIIMKNAACLDGAIIXXXXXXXXXXXXKTLERSYLLKMDSRVVERPQHMLMRVSVGIHK 180
Y+ I+ + L+ I KTLERSYLL+++++++ERPQH+LMRVS+GIH
Sbjct: 119 YDFILLHKDRLNKEIDYTRDFNYDYFGFKTLERSYLLRINNKIIERPQHLLMRVSIGIHI 178
Query: 181 DDTDSALKTYHLMSQHWFTHATPTLFNAGTPQPQLSSCFLLCMKDDSIEGIYDTLKKCAI 240
DD D AL+TYHLMSQ +FTHATPTLFN+GTP+PQ+SSCFLL MK DSIEGI++TLK+CA+
Sbjct: 179 DDIDKALETYHLMSQKYFTHATPTLFNSGTPRPQMSSCFLLSMKADSIEGIFETLKQCAL 238
Query: 241 ISKSAGGIGLSIHNIRASGSYIHGTNGSSNGIVPMLQVFNDTARYVDQGGGKRKGAFAIY 300
ISK+AGGIG+++ +IR SYI GTNG SNG+VPML+VFNDTARYVDQGGGKRKG+FA+Y
Sbjct: 239 ISKTAGGIGVAVQDIRGQNSYIRGTNGISNGLVPMLRVFNDTARYVDQGGGKRKGSFAVY 298
Query: 301 LEPWHADIFEFLDLRKNQGKEECRARDLFYALWVPDLFMERVRDDGKWSLFCPSDASGLA 360
+EPWH+DIFEFLDLRKN GKEE RARDLFYA+WVPDLFM+RV+++ W+L CP++ GL+
Sbjct: 299 IEPWHSDIFEFLDLRKNHGKEELRARDLFYAVWVPDLFMKRVKENKNWTLMCPNECPGLS 358
Query: 361 DSWGIEFEHLYSQYEEEGRAKMVISARKLWFEILNSQIETGTPYMLFKDSCNRKSNQQNL 420
++WG EFE LY++YEEE K + A+ LWF IL SQIETG PYML+KDSCN KSNQ+NL
Sbjct: 359 ETWGEEFEKLYTKYEEENMGKKTVLAQDLWFAILQSQIETGVPYMLYKDSCNAKSNQKNL 418
Query: 421 GTIKSSNLCTEIVEFSSPEETAVCNLASIALPRYV 455
GTIK SNLC EI+E++SP+E AVCNLASIAL ++V
Sbjct: 419 GTIKCSNLCCEIIEYTSPDEVAVCNLASIALCKFV 453
Score = 1083 (386.3 bits), Expect = 3.1e-267, Sum P(2) = 3.1e-267
Identities = 211/351 (60%), Positives = 262/351 (74%)
Query: 474 DSKNRLFDFERLAEVTKIITENLNKIIDVNHYPIETTRRSNLRHRPIGIGIQGLADTFIL 533
D + + F+F++L E+TKIIT NL+KII+ N+YP++ + SN RHRPIGIG+QGLADTF+L
Sbjct: 454 DLEKKEFNFKKLYEITKIITRNLDKIIERNYYPVKEAKTSNTRHRPIGIGVQGLADTFML 513
Query: 534 LGLPFESPEAQQLNKDIFETIYYHALKASAELAVKDGPYETYFGSPMSKGILQVDMWNIT 593
L P+ES A++LNK IFET+YY AL+ S ELA GPYE+Y GSP S+GILQ DMWN
Sbjct: 514 LRYPYESDAAKELNKRIFETMYYAALEMSVELASIHGPYESYQGSPASQGILQFDMWNAK 573
Query: 594 PSDR-WDWSSLREMISKNGVRNSLLVAPMPTASTSQILGNNECFEPYTSNIYTRRVLSGE 652
++ WDW L+ I K+G+RNSLL+APMPTASTSQILGNNE FEPYTSNIY RRVLSGE
Sbjct: 574 VDNKYWDWDELKAKIRKHGLRNSLLLAPMPTASTSQILGNNESFEPYTSNIYYRRVLSGE 633
Query: 653 FIVVNKHLLKDLTELGLWSHALKTKIIYENGSVSKISEIPEELKAIYKTVWEIKQKTLVD 712
F VVN HLLKDL + GLW +K ++I NGS+ ISEIP++LK +YKTVWEIKQK ++D
Sbjct: 634 FFVVNPHLLKDLFDRGLWDEDMKQQLIAHNGSIQYISEIPDDLKELYKTVWEIKQKNIID 693
Query: 713 MAADRGCYIDQSQSLNIHMEQPDHGKLTSLHFYAWSKGMKTGMYYLRTRAAADAIKFTVD 772
MAADRG +IDQSQSLNI++++P KL+S+HFY W KG+KTG YYLRT+AA DAIKFTVD
Sbjct: 694 MAADRGIFIDQSQSLNIYIQKPTFAKLSSMHFYGWEKGLKTGAYYLRTQAATDAIKFTVD 753
Query: 773 TSVLNNE-KANRADN------------DVEANLAQVVCSLK--NQEECMAC 808
T V N K AD E+ + Q VC L+ N E+C+ C
Sbjct: 754 THVAKNAVKLKNADGVQITREVSRETISTESTVTQNVCPLRRNNDEQCLMC 804
Score = 40 (19.1 bits), Expect = 1.0e-111, Sum P(2) = 1.0e-111
Identities = 13/47 (27%), Positives = 24/47 (51%)
Query: 81 VAVSNLHKITKNSFSETIKDMYNYYNKRSGKKASLVADDVYEIIMKN 127
VAV NL I F + K +N+ K+ + ++ ++ +II +N
Sbjct: 439 VAVCNLASIALCKFVDLEKKEFNF--KKLYEITKIITRNLDKIIERN 483
>UNIPROTKB|O61065 [details] [associations]
symbol:RNR1 "Ribonucleoside-diphosphate reductase large
chain" species:5807 "Cryptosporidium parvum" [GO:0004748
"ribonucleoside-diphosphate reductase activity, thioredoxin
disulfide as acceptor" evidence=ISS] [GO:0009263
"deoxyribonucleotide biosynthetic process" evidence=ISS]
InterPro:IPR000788 InterPro:IPR008926 InterPro:IPR013346
InterPro:IPR013509 Pfam:PF00317 Pfam:PF02867 PRINTS:PR01183
PROSITE:PS00089 UniPathway:UPA00326 Pfam:PF03477 GO:GO:0005524
GO:GO:0006260 GO:GO:0009263 InterPro:IPR005144 PROSITE:PS51161
eggNOG:COG0209 GO:GO:0005971 GO:GO:0004748 SUPFAM:SSF48168
TIGRFAMs:TIGR02506 EMBL:AF043243 ProteinModelPortal:O61065
SMR:O61065 STRING:O61065 Uniprot:O61065
Length = 803
Score = 1433 (509.5 bits), Expect = 2.1e-259, Sum P(2) = 2.1e-259
Identities = 264/455 (58%), Positives = 343/455 (75%)
Query: 1 MYVIKRDGRKEPVRFDKITARLKKLSYGLSKEHCDPVLVAQKVCAGVYKGVTTTQLDELA 60
MYV+ R G +EPV FD+I +R+ KLSYGL DP V Q V G+Y G+ T++LDELA
Sbjct: 1 MYVVNRKGEEEPVSFDQILSRITKLSYGLHPL-VDPARVTQAVINGLYSGIKTSELDELA 59
Query: 61 AETAAAMTVNHPDYALLAGRVAVSNLHKITKNSFSETIKDMYNYYNKRSGKKASLVADDV 120
++T A M H D++ LA R++ SNLHK T + + +YN+ + + G A L++ V
Sbjct: 60 SQTCAYMAATHNDFSKLAARISTSNLHKNTSSDIGDVASQLYNFKDNQ-GCPAPLISKPV 118
Query: 121 YEIIMKNAACLDGAIIXXXXXXXXXXXXKTLERSYLLKMDSRVVERPQHMLMRVSVGIHK 180
Y+ IM+N ++ I KTLERSYLLK+D++VVERPQH+LMRVS GIH
Sbjct: 119 YDFIMENRERINSKIDFSKDFEYDYFAFKTLERSYLLKIDNKVVERPQHLLMRVSCGIHC 178
Query: 181 DDTDSALKTYHLMSQHWFTHATPTLFNAGTPQPQLSSCFLLCMKDDSIEGIYDTLKKCAI 240
D ++AL+TY L+SQ +FTHATPTLFN+GTP+PQ+SSCFLL + +DSI GI+DTL KCA
Sbjct: 179 GDIEAALETYELLSQKYFTHATPTLFNSGTPRPQMSSCFLLRIPEDSINGIFDTLTKCAN 238
Query: 241 ISKSAGGIGLSIHNIRASGSYIHGTNGSSNGIVPMLQVFNDTARYVDQGGGKRKGAFAIY 300
ISK+AGG+G+++ NIR +GSYI GTNG SNG++PML+V+NDTARY+DQGGGKRKGA AIY
Sbjct: 239 ISKTAGGLGVAVSNIRGTGSYIRGTNGRSNGLIPMLRVYNDTARYIDQGGGKRKGAIAIY 298
Query: 301 LEPWHADIFEFLDLRKNQGKEECRARDLFYALWVPDLFMERVRDDGKWSLFCPSDASGLA 360
LEPWH D+ EF+++RKN GKEE R RDLF ALWVPDLFMERV D W+L CP + GL
Sbjct: 299 LEPWHVDVVEFIEIRKNHGKEEMRCRDLFPALWVPDLFMERVEKDQDWTLMCPDECRGLQ 358
Query: 361 DSWGIEFEHLYSQYEEEGRAKMVISARKLWFEILNSQIETGTPYMLFKDSCNRKSNQQNL 420
D WG +F+ LY +YE++GR + + A+KLWF IL +QIETGTP++ +KD+ N KSNQ+NL
Sbjct: 359 DVWGDDFKKLYEEYEKQGRGRKTMKAQKLWFLILQAQIETGTPFICYKDAANSKSNQKNL 418
Query: 421 GTIKSSNLCTEIVEFSSPEETAVCNLASIALPRYV 455
GTI SSNLCTEI+E++S +E AVCNLASI LP++V
Sbjct: 419 GTIVSSNLCTEIIEYTSTDEVAVCNLASIGLPKFV 453
Score = 1087 (387.7 bits), Expect = 2.1e-259, Sum P(2) = 2.1e-259
Identities = 212/350 (60%), Positives = 260/350 (74%)
Query: 474 DSKNRLFDFERLAEVTKIITENLNKIIDVNHYPIETTRRSNLRHRPIGIGIQGLADTFIL 533
D N+ FDF++L EVTK+IT NLNK+IDV +Y ++ ++SNLRHRP+GIGIQGLAD F++
Sbjct: 454 DKNNKTFDFDKLKEVTKVITRNLNKLIDVGYYSLKECKKSNLRHRPLGIGIQGLADCFMM 513
Query: 534 LGLPFESPEAQQLNKDIFETIYYHALKASAELAVKDGPYETYFGSPMSKGILQVDMWNIT 593
L +P+ES A++LNK IFE IYY AL AS ELA K GPYETY GSP SKGILQ DMW +T
Sbjct: 514 LRMPYESEGAKKLNKQIFEVIYYAALDASCELAEKYGPYETYSGSPASKGILQFDMWGVT 573
Query: 594 P-SDRWDWSSLREMISKNGVRNSLLVAPMPTASTSQILGNNECFEPYTSNIYTRRVLSGE 652
P S DW L++ ISK+G+RNSLL++PMPTASTSQILGNNE FEP+TSNIY RRVLSGE
Sbjct: 574 PDSGLCDWDLLKDRISKHGIRNSLLISPMPTASTSQILGNNESFEPFTSNIYHRRVLSGE 633
Query: 653 FIVVNKHLLKDLTELGLWSHALKTKIIYENGSVSKISEIPEELKAIYKTVWEIKQKTLVD 712
F VVN HLL DL ELGLW LK II NGS+ I IPE+++ +YKTVWEIKQKT++D
Sbjct: 634 FFVVNPHLLNDLLELGLWDDRLKQNIIANNGSIQNILTIPEDIRELYKTVWEIKQKTVID 693
Query: 713 MAADRGCYIDQSQSLNIHMEQPDHGKLTSLHFYAWSKGMKTGMYYLRTRAAADAIKFTVD 772
MAADRG Y+ QSQSLNIHME + KL+S+HFY W KG+KTG+YYLRT++A I+FTVD
Sbjct: 694 MAADRGPYVCQSQSLNIHMENANFAKLSSMHFYGWKKGLKTGIYYLRTQSATRPIQFTVD 753
Query: 773 TSVLNNEKANRADNDVEANLAQ---------VVCSL-----KNQEECMAC 808
+L +E + + +E N Q + C L K+ EECM C
Sbjct: 754 QQLLKSETKEK--DSLETNKRQALEPEAQKLIACPLRPTNMKDDEECMMC 801
>UNIPROTKB|E9PD78 [details] [associations]
symbol:RRM1 "Ribonucleoside-diphosphate reductase"
species:9606 "Homo sapiens" [GO:0005524 "ATP binding" evidence=IEA]
[GO:0005971 "ribonucleoside-diphosphate reductase complex"
evidence=IEA] [GO:0004748 "ribonucleoside-diphosphate reductase
activity, thioredoxin disulfide as acceptor" evidence=IEA]
[GO:0009263 "deoxyribonucleotide biosynthetic process"
evidence=IEA] [GO:0051290 "protein heterotetramerization"
evidence=IEA] [GO:0006260 "DNA replication" evidence=IEA]
InterPro:IPR000788 InterPro:IPR008926 InterPro:IPR013346
InterPro:IPR013509 Pfam:PF00317 Pfam:PF02867 PRINTS:PR01183
PROSITE:PS00089 UniPathway:UPA00326 GO:GO:0005524 GO:GO:0006260
GO:GO:0051290 GO:GO:0009263 GO:GO:0005971 GO:GO:0004748
SUPFAM:SSF48168 TIGRFAMs:TIGR02506 HGNC:HGNC:10451 ChiTaRS:RRM1
EMBL:AC015689 IPI:IPI00943207 ProteinModelPortal:E9PD78 SMR:E9PD78
Ensembl:ENST00000423050 ArrayExpress:E9PD78 Bgee:E9PD78
Uniprot:E9PD78
Length = 695
Score = 1309 (465.8 bits), Expect = 4.9e-258, Sum P(2) = 4.9e-258
Identities = 240/358 (67%), Positives = 295/358 (82%)
Query: 98 IKDMYNYYNKRSGKKASLVADDVYEIIMKNAACLDGAIIXXXXXXXXXXXXKTLERSYLL 157
++D+YNY N +GK + +VA +I++ N L+ AII KTLERSYLL
Sbjct: 1 MEDLYNYINPHNGKHSPMVAKSTLDIVLANKDRLNSAIIYDRDFSYNYFGFKTLERSYLL 60
Query: 158 KMDSRVVERPQHMLMRVSVGIHKDDTDSALKTYHLMSQHWFTHATPTLFNAGTPQPQLSS 217
K++ +V ERPQHMLMRVSVGIHK+D D+A++TY+L+S+ WFTHA+PTLFNAGT +PQLSS
Sbjct: 61 KINGKVAERPQHMLMRVSVGIHKEDIDAAIETYNLLSERWFTHASPTLFNAGTNRPQLSS 120
Query: 218 CFLLCMKDDSIEGIYDTLKKCAIISKSAGGIGLSIHNIRASGSYIHGTNGSSNGIVPMLQ 277
CFLL MKDDSIEGIYDTLK+CA+ISKSAGGIG+++ IRA+GSYI GTNG+SNG+VPML+
Sbjct: 121 CFLLSMKDDSIEGIYDTLKQCALISKSAGGIGVAVSCIRATGSYIAGTNGNSNGLVPMLR 180
Query: 278 VFNDTARYVDQGGGKRKGAFAIYLEPWHADIFEFLDLRKNQGKEECRARDLFYALWVPDL 337
V+N+TARYVDQGG KR GAFAIYLEPWH DIFEFLDL+KN GKEE RARDLF+ALW+PDL
Sbjct: 181 VYNNTARYVDQGGNKRPGAFAIYLEPWHLDIFEFLDLKKNTGKEEQRARDLFFALWIPDL 240
Query: 338 FMERVRDDGKWSLFCPSDASGLADSWGIEFEHLYSQYEEEGRAKMVISARKLWFEILNSQ 397
FM+RV + WSL CP++ GL + WG EFE LY+ YE++GR + V+ A++LW+ I+ SQ
Sbjct: 241 FMKRVETNQDWSLMCPNECPGLDEVWGEEFEKLYASYEKQGRVRKVVKAQQLWYAIIESQ 300
Query: 398 IETGTPYMLFKDSCNRKSNQQNLGTIKSSNLCTEIVEFSSPEETAVCNLASIALPRYV 455
ETGTPYML+KDSCNRKSNQQNLGTIK SNLCTEIVE++S +E AVCNLAS+AL YV
Sbjct: 301 TETGTPYMLYKDSCNRKSNQQNLGTIKCSNLCTEIVEYTSKDEVAVCNLASLALNMYV 358
Score = 1198 (426.8 bits), Expect = 4.9e-258, Sum P(2) = 4.9e-258
Identities = 224/371 (60%), Positives = 283/371 (76%)
Query: 441 TAVCNLASIALPRYVREKGVPVQSNVSKLVGSRDSKNRLFDFERLAEVTKIITENLNKII 500
T C+ + Y + V V + S + + +DF++LAEVTK++ NLNKII
Sbjct: 325 TIKCSNLCTEIVEYTSKDEVAVCNLASLALNMYVTSEHTYDFKKLAEVTKVVVRNLNKII 384
Query: 501 DVNHYPIETTRRSNLRHRPIGIGIQGLADTFILLGLPFESPEAQQLNKDIFETIYYHALK 560
D+N+YP+ SN RHRPIGIG+QGLAD FIL+ PFES EAQ LNK IFETIYY AL+
Sbjct: 385 DINYYPVPEACLSNKRHRPIGIGVQGLADAFILMRYPFESAEAQLLNKQIFETIYYGALE 444
Query: 561 ASAELAVKDGPYETYFGSPMSKGILQVDMWNITPSDRWDWSSLREMISKNGVRNSLLVAP 620
AS +LA + GPYETY GSP+SKGILQ DMWN+TP+D WDW L+E I+K G+RNSLL+AP
Sbjct: 445 ASCDLAKEQGPYETYEGSPVSKGILQYDMWNVTPTDLWDWKVLKEKIAKYGIRNSLLIAP 504
Query: 621 MPTASTSQILGNNECFEPYTSNIYTRRVLSGEFIVVNKHLLKDLTELGLWSHALKTKIIY 680
MPTAST+QILGNNE EPYTSNIYTRRVLSGEF +VN HLLKDLTE GLW +K +II
Sbjct: 505 MPTASTAQILGNNESIEPYTSNIYTRRVLSGEFQIVNPHLLKDLTERGLWHEEMKNQIIA 564
Query: 681 ENGSVSKISEIPEELKAIYKTVWEIKQKTLVDMAADRGCYIDQSQSLNIHMEQPDHGKLT 740
NGS+ I EIP++LK +YKTVWEI QKT++ MAA+RG +IDQSQSLNIH+ +P++GKLT
Sbjct: 565 CNGSIQSIPEIPDDLKQLYKTVWEISQKTVLKMAAERGAFIDQSQSLNIHIAEPNYGKLT 624
Query: 741 SLHFYAWSKGMKTGMYYLRTRAAADAIKFTVDTSVLNN-EKANRADNDVEANLAQVVCSL 799
S+HFY W +G+KTGMYYLRTR AA+ I+FT++ L + EK ++ + + E N A +VCSL
Sbjct: 625 SMHFYGWKQGLKTGMYYLRTRPAANPIQFTLNKEKLKDKEKVSKEEEEKERNTAAMVCSL 684
Query: 800 KNQEECMACGS 810
+N++EC+ CGS
Sbjct: 685 ENRDECLMCGS 695
>UNIPROTKB|P50647 [details] [associations]
symbol:RNR1 "Ribonucleoside-diphosphate reductase large
subunit" species:5838 "Plasmodium falciparum FCR-3/Gambia"
[GO:0004748 "ribonucleoside-diphosphate reductase activity,
thioredoxin disulfide as acceptor" evidence=ISS] [GO:0009263
"deoxyribonucleotide biosynthetic process" evidence=ISS]
InterPro:IPR000788 InterPro:IPR008926 InterPro:IPR013346
InterPro:IPR013509 Pfam:PF00317 Pfam:PF02867 PRINTS:PR01183
PROSITE:PS00089 UniPathway:UPA00326 Pfam:PF03477 GO:GO:0005524
GO:GO:0006260 GO:GO:0009263 InterPro:IPR005144 PROSITE:PS51161
GO:GO:0005971 GO:GO:0004748 SUPFAM:SSF48168 TIGRFAMs:TIGR02506
EMBL:AF205580 PIR:B48687 ProteinModelPortal:P50647 SMR:P50647
Uniprot:P50647
Length = 804
Score = 1459 (518.7 bits), Expect = 1.9e-256, Sum P(2) = 1.9e-256
Identities = 269/455 (59%), Positives = 350/455 (76%)
Query: 1 MYVIKRDGRKEPVRFDKITARLKKLSYGLSKEHCDPVLVAQKVCAGVYKGVTTTQLDELA 60
MYV+ R G +E + FD+I R+++LSYGL K P V Q V G+Y + T +LDELA
Sbjct: 1 MYVLNRKGEEEDISFDQILKRIQRLSYGLHKLGEYPACVTQGVINGMYSSIKTCELDELA 60
Query: 61 AETAAAMTVNHPDYALLAGRVAVSNLHKITKNSFSETIKDMYNYYNKRSGKKASLVADDV 120
A+T A M HPD+++LA R+ NLHK T + +E + +Y Y + R G+ ASL++ +V
Sbjct: 61 AQTCAYMATTHPDFSILAARITTDNLHKNTSDDVAEVAEALYTYKDGR-GRPASLISKEV 119
Query: 121 YEIIMKNAACLDGAIIXXXXXXXXXXXXKTLERSYLLKMDSRVVERPQHMLMRVSVGIHK 180
Y+ I+ + L+ I KTLERSYLL+++++++ERPQH+LMRVS+GIH
Sbjct: 120 YDFILLHKVRLNKEIDYTTHFNYDYFGFKTLERSYLLRINNKIIERPQHLLMRVSIGIHI 179
Query: 181 DDTDSALKTYHLMSQHWFTHATPTLFNAGTPQPQLSSCFLLCMKDDSIEGIYDTLKKCAI 240
DD D AL+TYHLMSQ +FTHATPTLFN+GTP+PQ+SSCFLL MK DSIEGI++TLK+CA+
Sbjct: 180 DDIDKALETYHLMSQKYFTHATPTLFNSGTPRPQMSSCFLLSMKADSIEGIFETLKQCAL 239
Query: 241 ISKSAGGIGLSIHNIRASGSYIHGTNGSSNGIVPMLQVFNDTARYVDQGGGKRKGAFAIY 300
ISK+AGGIG+++ +IR SYI GTNG SNG+VPML+VFNDTARYVDQGGGKRKG++A+Y
Sbjct: 240 ISKTAGGIGVAVQDIRGQNSYIRGTNGISNGLVPMLRVFNDTARYVDQGGGKRKGSYAVY 299
Query: 301 LEPWHADIFEFLDLRKNQGKEECRARDLFYALWVPDLFMERVRDDGKWSLFCPSDASGLA 360
+EPWH+DIFEFLDLRKN GKEE RARDLFYA+WVPDLFM+RV+++ W+L CP++ GL+
Sbjct: 300 IEPWHSDIFEFLDLRKNHGKEELRARDLFYAVWVPDLFMKRVKENKNWTLMCPNECPGLS 359
Query: 361 DSWGIEFEHLYSQYEEEGRAKMVISARKLWFEILNSQIETGTPYMLFKDSCNRKSNQQNL 420
++WG EFE LY++YEEE K + A+ LWF IL SQIETG P L+KDSCN K + NL
Sbjct: 360 ETWGEEFEKLYTKYEEENMGKKTVLAQDLWFAILQSQIETGVPIYLYKDSCNAKPIK-NL 418
Query: 421 GTIKSSNLCTEIVEFSSPEETAVCNLASIALPRYV 455
GTIK SNLC EI+E++SP+E AVCNLASIAL ++V
Sbjct: 419 GTIKCSNLCCEIIEYTSPDEVAVCNLASIALCKFV 453
Score = 1033 (368.7 bits), Expect = 1.9e-256, Sum P(2) = 1.9e-256
Identities = 204/350 (58%), Positives = 258/350 (73%)
Query: 474 DSKNRLFDFERLAEVTKIITENLNKIIDVNHYPIETTRRSNLRHRPIGIGIQGLADTFIL 533
D + + F+F++L E+TKIIT NL+KII+ N+YP++ + SN RHRPIGIG+QGLADTF+L
Sbjct: 454 DLEKKEFNFKKLYEITKIITRNLDKIIERNYYPVKEAKTSNTRHRPIGIGVQGLADTFML 513
Query: 534 LGLPFESPEAQQLNKDIFETIYYHALKASAELAVKDGPYETYFGSPMSKGILQVDMWNIT 593
L +ES A++LNK I+ET+YY AL+ S + ++ GPYE+Y GSP S+GILQ DMWN
Sbjct: 514 LRYLYESDAAKELNKRIYETMYYAALEMSVDW-LQSGPYESYQGSPGSQGILQFDMWNAK 572
Query: 594 PSDR-WDWSSLREMISKNGVRNSLLVAPMPTASTSQILGNNECFEPYTSNIYTRRVLSGE 652
++ WDW L+ I+K G+RN LL+APMPTASTSQILGNNE FEPYTSNIY RRVLSGE
Sbjct: 573 VDNKYWDWDELKLKIAKTGLRNLLLLAPMPTASTSQILGNNESFEPYTSNIYYRRVLSGE 632
Query: 653 FIVVNKHLLKDLTELGLWSHALKTKIIYENGSVSKISEIPEELKAIYKTVWEIKQKTLVD 712
F VVN HLLKDL + GLW +K ++I NGS+ ISEIP++LK +YKTVWEIKQK ++D
Sbjct: 633 FFVVNPHLLKDLFDRGLWDEDMKQQLIAHNGSIQYISEIPDDLKELYKTVWEIKQKNIID 692
Query: 713 MAADRGCYIDQSQSLNIHMEQPDHGKLTSLHFYAWSKGMKTGMYYLRTRAAADAIKFTVD 772
MAADRG +IDQSQSLNI++++P KL+S+HFY W KG+KTG YYLRT+AA DAIKFTVD
Sbjct: 693 MAADRGYFIDQSQSLNIYIQKPTFAKLSSMHFYGWEKGLKTGAYYLRTQAATDAIKFTVD 752
Query: 773 TSVLNNE-KANRADN----------DVEANLAQVVC-SLK--NQEECMAC 808
T V N K AD ++ N C S K N E+C+ C
Sbjct: 753 THVAKNAVKLKNADGVQITREVSRETIQLNQRYSKCVSFKSNNDEQCLMC 802
Score = 40 (19.1 bits), Expect = 1.9e-106, Sum P(2) = 1.9e-106
Identities = 13/47 (27%), Positives = 24/47 (51%)
Query: 81 VAVSNLHKITKNSFSETIKDMYNYYNKRSGKKASLVADDVYEIIMKN 127
VAV NL I F + K +N+ K+ + ++ ++ +II +N
Sbjct: 439 VAVCNLASIALCKFVDLEKKEFNF--KKLYEITKIITRNLDKIIERN 483
>UNIPROTKB|O15909 [details] [associations]
symbol:RNR1 "Ribonucleoside-diphosphate reductase large
subunit" species:5702 "Trypanosoma brucei brucei" [GO:0004748
"ribonucleoside-diphosphate reductase activity, thioredoxin
disulfide as acceptor" evidence=ISS] [GO:0009263
"deoxyribonucleotide biosynthetic process" evidence=ISS]
InterPro:IPR000788 InterPro:IPR008926 InterPro:IPR013346
InterPro:IPR013509 Pfam:PF00317 Pfam:PF02867 PRINTS:PR01183
PROSITE:PS00089 UniPathway:UPA00326 Pfam:PF03477 GO:GO:0005524
GO:GO:0006260 GO:GO:0009263 InterPro:IPR005144 PROSITE:PS51161
GO:GO:0005971 GO:GO:0004748 SUPFAM:SSF48168 TIGRFAMs:TIGR02506
EMBL:U80910 ProteinModelPortal:O15909 SMR:O15909
EuPathDB:TriTrypDB:Tb11.02.5720 EuPathDB:TriTrypDB:Tb427tmp.02.5720
Uniprot:O15909
Length = 838
Score = 2318 (821.0 bits), Expect = 1.7e-240, P = 1.7e-240
Identities = 459/792 (57%), Positives = 578/792 (72%)
Query: 3 VIKRDGRKEPVRFDKITARLKKLSYGLSKEHCDPVLVAQKVCAGVYKGVTTTQLDELAAE 62
V KRDG EP + +R+ L G+ + D + + V GV +G++T+ LDEL AE
Sbjct: 8 VTKRDGSVEPYDEKVVRSRIVNLMSGIDSYYVDVDDLVRVVGEGVREGMSTSMLDELLAE 67
Query: 63 TAAAMTVNHPDYALLAGRVAVSNLHKITKNSFSETIKDMYNYYNKRSGKKASLVADDVYE 122
TAA HPDY LLAGR+AV+ LHK T S ++ + ++ + ++ + + A L+++++++
Sbjct: 68 TAAYCVTKHPDYGLLAGRLAVTALHKTTTESVLDSFRVLHEHVSQATKRHAPLISEELWD 127
Query: 123 IIMKNAACLDGAIIXXXXXXXXXXXXKTLERSYLLKMDS-----RVVERPQHMLMRVSVG 177
I K++A L I KTLERSYLL++ VVERPQ M +RV++G
Sbjct: 128 IANKHSAALQQIINYERDFDFEYFGYKTLERSYLLRVHKGRGVMEVVERPQQMFLRVALG 187
Query: 178 IHKDDTDSALKTYHLMSQHWFTHATPTLFNAGTPQPQLSSCFLLCMKDDSIEGIYDTLKK 237
IH +D + +TY MSQ +FTHATPTLFNAGTP PQ+SSCFL+ M++DSI+GIYDTLK+
Sbjct: 188 IHGEDLERVKETYDYMSQGFFTHATPTLFNAGTPFPQMSSCFLVAMREDSIDGIYDTLKQ 247
Query: 238 CAIISKSAGGIGLSIHNIRASGSYIHGTNGSSNGIVPMLQVFNDTARYVDQGGGKRKGAF 297
CAIISKSAGGIG+ +HNIRA+GSYI GTNG+SNG+VPML+V+N+TARYVDQGGGKRKGAF
Sbjct: 248 CAIISKSAGGIGIHMHNIRAAGSYIAGTNGTSNGLVPMLRVWNNTARYVDQGGGKRKGAF 307
Query: 298 AIYLEPWHADIFEFLDLRKNQGKEECRARDLFYALWVPDLFMERVRDDGKWSLFCPSDAS 357
AIYLEPWHADIF FL L+KN GKE+ RARDLFY LW+PDLFMERV G W+L P+ A
Sbjct: 308 AIYLEPWHADIFGFLLLKKNTGKEDQRARDLFYGLWIPDLFMERVESHGTWTLMDPNTAP 367
Query: 358 GLADSWGIEFEHLYSQYEEEGRAKMVISARKLWFEILNSQIETGTPYMLFKDSCNRKSNQ 417
L+D +G EF LY +YE EGR I A++LWF IL SQ+ETG P+ML+KD+CN KSNQ
Sbjct: 368 FLSDCYGQEFTDLYERYEREGRGVRTIQAQELWFLILESQVETGVPFMLYKDACNFKSNQ 427
Query: 418 QNLGTIKSSNLCTEIVEFSSPEETAVCNLASIALPRYVREKGVPVQSNVSKLVGSRDSKN 477
+NLGTIK SNLCTEIVE++S +E AVCNLASIALPR+V++ G+
Sbjct: 428 KNLGTIKCSNLCTEIVEYTSRDEVAVCNLASIALPRFVKD-------------GA----- 469
Query: 478 RLFDFERLAEVTKIITENLNKIIDVNHYPIETTRRSNLRHRPIGIGIQGLADTFILLGLP 537
FD+ L EVTK++T NLN++ID NHYP+ R SNLRHRP+GIG+QGLAD F LL LP
Sbjct: 470 --FDYVALKEVTKVVTRNLNRVIDRNHYPVCEARYSNLRHRPVGIGVQGLADAFALLSLP 527
Query: 538 FESPEAQQLNKDIFETIYYHALKASAELAVKDGPYETYFGSPMSKGILQVDMWNITPSDR 597
F PEA++LN+ IFETIY A++AS ELA KDGPYET+ GSP S+G LQ D+W+ R
Sbjct: 528 FAHPEAKKLNRQIFETIYIAAVEASTELAEKDGPYETFKGSPASEGKLQFDLWDEERRIR 587
Query: 598 -------------WDWSSLREMISKNGVRNSLLVAPMPTASTSQILGNNECFEPYTSNIY 644
WDW SL+E + K G+RNSLL+APMPTASTSQILGNNEC EP+TSNIY
Sbjct: 588 GMNEDSVHSHCGLWDWDSLKERVVKVGMRNSLLIAPMPTASTSQILGNNECIEPFTSNIY 647
Query: 645 TRRVLSGEFIVVNKHLLKDLTELGLWSHALKTKIIYENGSVSKISEIPEELKAIYKTVWE 704
RRVLSGEF VVNKHL+K+L L LW+ ++ KII NGSVS I EIPE ++ +YK VWE
Sbjct: 648 VRRVLSGEFPVVNKHLVKELIRLRLWNDDMRRKIIALNGSVSGIKEIPERIRELYKVVWE 707
Query: 705 IKQKTLVDMAADRGCYIDQSQSLNIHMEQPDHGKLTSLHFYAWSKGMKTGMYYLRTRAAA 764
I+QK L+DMAADRG YIDQSQSLN+ + P +LTS+HFY+W KG+KTGMYYLR++ AA
Sbjct: 708 IRQKDLIDMAADRGRYIDQSQSLNLFLATPTSSQLTSMHFYSWKKGLKTGMYYLRSQPAA 767
Query: 765 DAIKFTVDTSVL 776
DAIKFT+D +
Sbjct: 768 DAIKFTLDPKAM 779
>UNIPROTKB|F1SUZ5 [details] [associations]
symbol:F1SUZ5 "Uncharacterized protein" species:9823 "Sus
scrofa" [GO:0006260 "DNA replication" evidence=IEA] [GO:0005971
"ribonucleoside-diphosphate reductase complex" evidence=IEA]
[GO:0004748 "ribonucleoside-diphosphate reductase activity,
thioredoxin disulfide as acceptor" evidence=IEA] InterPro:IPR000788
InterPro:IPR008926 InterPro:IPR013346 Pfam:PF02867 PRINTS:PR01183
PROSITE:PS00089 Pfam:PF03477 GO:GO:0006260 InterPro:IPR005144
PROSITE:PS51161 GO:GO:0005971 GO:GO:0004748 SUPFAM:SSF48168
TIGRFAMs:TIGR02506 GeneTree:ENSGT00390000001372 EMBL:CU467106
EMBL:CU466349 Ensembl:ENSSSCT00000016142 OMA:XRPGAFA Uniprot:F1SUZ5
Length = 789
Score = 1200 (427.5 bits), Expect = 7.6e-220, Sum P(2) = 7.6e-220
Identities = 225/370 (60%), Positives = 282/370 (76%)
Query: 441 TAVCNLASIALPRYVREKGVPVQSNVSKLVGSRDSKNRLFDFERLAEVTKIITENLNKII 500
T C+ + Y + V V + S + + +DF +LAEVTK+I NLNKII
Sbjct: 420 TIKCSNLCTEIVEYTSKDEVAVCNLASLALNMYVTSEHTYDFTKLAEVTKVIVRNLNKII 479
Query: 501 DVNHYPIETTRRSNLRHRPIGIGIQGLADTFILLGLPFESPEAQQLNKDIFETIYYHALK 560
D+N+YPI SN RHRPIGIG+QGLAD FIL+ PFESPEAQ LNK IFETIYY AL+
Sbjct: 480 DINYYPIPEASLSNKRHRPIGIGVQGLADAFILMRYPFESPEAQLLNKQIFETIYYGALE 539
Query: 561 ASAELAVKDGPYETYFGSPMSKGILQVDMWNITPSDRWDWSSLREMISKNGVRNSLLVAP 620
AS +LA + GPYETY GSP+SKGILQ DMWN+TP+D WDW L+E I+K G+RNSLL+AP
Sbjct: 540 ASCDLAKEYGPYETYEGSPVSKGILQYDMWNVTPTDLWDWKLLKEKIAKYGIRNSLLIAP 599
Query: 621 MPTASTSQILGNNECFEPYTSNIYTRRVLSGEFIVVNKHLLKDLTELGLWSHALKTKIIY 680
MPTAST+QILGNNE EPYTSNIYTRRVLSGEF +VN HLLKDLTE GLW+ +K +II
Sbjct: 600 MPTASTAQILGNNESIEPYTSNIYTRRVLSGEFQIVNPHLLKDLTERGLWNEEMKNQIIA 659
Query: 681 ENGSVSKISEIPEELKAIYKTVWEIKQKTLVDMAADRGCYIDQSQSLNIHMEQPDHGKLT 740
NGS+ I EIP++LK +YKTVWEI QKT++ MAA+RG +IDQSQSLNIH+ +P++GKLT
Sbjct: 660 CNGSIQSIPEIPDDLKQLYKTVWEISQKTVLKMAAERGAFIDQSQSLNIHIAEPNYGKLT 719
Query: 741 SLHFYAWSKGMKTGMYYLRTRAAADAIKFTVDTSVLNNEKANRADNDVEANLAQVVCSLK 800
S+HFY W +G+KTGMYYLRTR AA+ I+FT++ L +++ + + E N A +VCSL+
Sbjct: 720 SMHFYGWKQGLKTGMYYLRTRPAANPIQFTLNKEKLKDKEKVSKEEEKERNTAAMVCSLE 779
Query: 801 NQEECMACGS 810
N++EC+ CGS
Sbjct: 780 NRDECLMCGS 789
Score = 946 (338.1 bits), Expect = 7.6e-220, Sum P(2) = 7.6e-220
Identities = 202/455 (44%), Positives = 269/455 (59%)
Query: 7 DGRKEPVRFDKITARLKKLSYGLSKEHCDPVLVAQKVCAGVYKGVTTTQLDELAAETAAA 66
DGR+E V FDKIT+R++KL YGL+ + DP + KV G+Y GVTT +LD LAAETAA
Sbjct: 7 DGRQERVMFDKITSRIQKLCYGLNMDFVDPAQITMKVIQGLYSGVTTVELDTLAAETAAT 66
Query: 67 MTVNHPDYALLAGRVAVSNLHKITKNSFSETIKDMYNYYNKRSGKKASLVADDVYEIIMK 126
+T HPDYA+LA R+AVSNLHK TK FS+ ++D++NY N +GK + +VA +I++
Sbjct: 67 LTTKHPDYAILAARIAVSNLHKETKKVFSDVMEDLFNYINPHNGKHSPMVARSTLDIVLA 126
Query: 127 NAACLDGAIIXXXXXXXXXXXXKTLERSYLLKMDSRVVERPQHMLMRVSVGIHKDDTDSA 186
N + II R+Y+ +RP + T S
Sbjct: 127 NKDKIQCFIILKCIFPELFCNTHVCVRAYIYFQGGNKTDRPNSAYFPEECAA--ECTGSL 184
Query: 187 LKTYHLMSQHWFTHATPTLFNAGTPQPQLSSCFLLCMKDDSIEGI----YDTLKKCAIIS 242
++ Y S W + + + L+ +K I + T K+ +I+
Sbjct: 185 IQCYRQGS--WLLEPVSRGYVGTLITSEFMNFSLMYLKQSMGTSIRPPTFLTFKESKLIT 242
Query: 243 KSAGGI--GLSIHNIRASGSYIHGTNGSSNGIVPMLQVFNDTARYVDQGGGKRKGAFAIY 300
I GL H + S + T + +V + + + + R GAFAIY
Sbjct: 243 VKGKAIFFGLCTHTCKVSWT---PTEEEAPSLVYCVAWHKYSVSLIPRFL-HRPGAFAIY 298
Query: 301 LEPWHADIFEFLDLRKNQGKEECRARDLFYALWVPDLFMERVRDDGKWSLFCPSDASGLA 360
LEPWH DIFEFLDL+KN GKEE RARDLF+ALW+PDLFM+RV + WSL CP++ GL
Sbjct: 299 LEPWHLDIFEFLDLKKNTGKEEQRARDLFFALWIPDLFMKRVETNQDWSLMCPNECPGLD 358
Query: 361 DSWGIEFEHLYSQYEEEGRAKMVISARKLWFEILNSQIETGTPYMLFKDSCNRKSNQQNL 420
+ WG EFE LY YE +G + V+ A++LW+ I+ SQ ETGTPYML+KDSCNRKSNQQNL
Sbjct: 359 EVWGEEFEKLYESYERQGHVRKVVKAQQLWYAIIESQTETGTPYMLYKDSCNRKSNQQNL 418
Query: 421 GTIKSSNLCTEIVEFSSPEETAVCNLASIALPRYV 455
GTIK SNLCTEIVE++S +E AVCNLAS+AL YV
Sbjct: 419 GTIKCSNLCTEIVEYTSKDEVAVCNLASLALNMYV 453
>UNIPROTKB|E9PL69 [details] [associations]
symbol:RRM1 "Ribonucleoside-diphosphate reductase large
subunit" species:9606 "Homo sapiens" [GO:0005971
"ribonucleoside-diphosphate reductase complex" evidence=IEA]
[GO:0006260 "DNA replication" evidence=IEA] [GO:0004748
"ribonucleoside-diphosphate reductase activity, thioredoxin
disulfide as acceptor" evidence=IEA] [GO:0009263
"deoxyribonucleotide biosynthetic process" evidence=IEA]
[GO:0017076 "purine nucleotide binding" evidence=IEA] [GO:0051290
"protein heterotetramerization" evidence=IEA] InterPro:IPR000788
InterPro:IPR013346 Pfam:PF02867 PRINTS:PR01183 PROSITE:PS00089
GO:GO:0006260 GO:GO:0051290 GO:GO:0017076 GO:GO:0009263
GO:GO:0005971 GO:GO:0004748 TIGRFAMs:TIGR02506 HGNC:HGNC:10451
ChiTaRS:RRM1 EMBL:AC015689 IPI:IPI01008934
ProteinModelPortal:E9PL69 SMR:E9PL69 Ensembl:ENST00000534285
ArrayExpress:E9PL69 Bgee:E9PL69 Uniprot:E9PL69
Length = 570
Score = 1198 (426.8 bits), Expect = 4.8e-218, Sum P(2) = 4.8e-218
Identities = 224/371 (60%), Positives = 283/371 (76%)
Query: 441 TAVCNLASIALPRYVREKGVPVQSNVSKLVGSRDSKNRLFDFERLAEVTKIITENLNKII 500
T C+ + Y + V V + S + + +DF++LAEVTK++ NLNKII
Sbjct: 200 TIKCSNLCTEIVEYTSKDEVAVCNLASLALNMYVTSEHTYDFKKLAEVTKVVVRNLNKII 259
Query: 501 DVNHYPIETTRRSNLRHRPIGIGIQGLADTFILLGLPFESPEAQQLNKDIFETIYYHALK 560
D+N+YP+ SN RHRPIGIG+QGLAD FIL+ PFES EAQ LNK IFETIYY AL+
Sbjct: 260 DINYYPVPEACLSNKRHRPIGIGVQGLADAFILMRYPFESAEAQLLNKQIFETIYYGALE 319
Query: 561 ASAELAVKDGPYETYFGSPMSKGILQVDMWNITPSDRWDWSSLREMISKNGVRNSLLVAP 620
AS +LA + GPYETY GSP+SKGILQ DMWN+TP+D WDW L+E I+K G+RNSLL+AP
Sbjct: 320 ASCDLAKEQGPYETYEGSPVSKGILQYDMWNVTPTDLWDWKVLKEKIAKYGIRNSLLIAP 379
Query: 621 MPTASTSQILGNNECFEPYTSNIYTRRVLSGEFIVVNKHLLKDLTELGLWSHALKTKIIY 680
MPTAST+QILGNNE EPYTSNIYTRRVLSGEF +VN HLLKDLTE GLW +K +II
Sbjct: 380 MPTASTAQILGNNESIEPYTSNIYTRRVLSGEFQIVNPHLLKDLTERGLWHEEMKNQIIA 439
Query: 681 ENGSVSKISEIPEELKAIYKTVWEIKQKTLVDMAADRGCYIDQSQSLNIHMEQPDHGKLT 740
NGS+ I EIP++LK +YKTVWEI QKT++ MAA+RG +IDQSQSLNIH+ +P++GKLT
Sbjct: 440 CNGSIQSIPEIPDDLKQLYKTVWEISQKTVLKMAAERGAFIDQSQSLNIHIAEPNYGKLT 499
Query: 741 SLHFYAWSKGMKTGMYYLRTRAAADAIKFTVDTSVLNN-EKANRADNDVEANLAQVVCSL 799
S+HFY W +G+KTGMYYLRTR AA+ I+FT++ L + EK ++ + + E N A +VCSL
Sbjct: 500 SMHFYGWKQGLKTGMYYLRTRPAANPIQFTLNKEKLKDKEKVSKEEEEKERNTAAMVCSL 559
Query: 800 KNQEECMACGS 810
+N++EC+ CGS
Sbjct: 560 ENRDECLMCGS 570
Score = 931 (332.8 bits), Expect = 4.8e-218, Sum P(2) = 4.8e-218
Identities = 169/233 (72%), Positives = 202/233 (86%)
Query: 223 MKDDSIEGIYDTLKKCAIISKSAGGIGLSIHNIRASGSYIHGTNGSSNGIVPMLQVFNDT 282
MKDDSIEGIYDTLK+CA+ISKSAGGIG+++ IRA+GSYI GTNG+SNG+VPML+V+N+T
Sbjct: 1 MKDDSIEGIYDTLKQCALISKSAGGIGVAVSCIRATGSYIAGTNGNSNGLVPMLRVYNNT 60
Query: 283 ARYVDQGGGKRKGAFAIYLEPWHADIFEFLDLRKNQGKEECRARDLFYALWVPDLFMERV 342
ARYVDQGG KR GAFAIYLEPWH DIFEFLDL+KN GKEE RARDLF+ALW+PDLFM+RV
Sbjct: 61 ARYVDQGGNKRPGAFAIYLEPWHLDIFEFLDLKKNTGKEEQRARDLFFALWIPDLFMKRV 120
Query: 343 RDDGKWSLFCPSDASGLADSWGIEFEHLYSQYEEEGRAKMVISARKLWFEILNSQIETGT 402
+ WSL CP++ GL + WG EFE LY+ YE++GR + V+ A++LW+ I+ SQ ETGT
Sbjct: 121 ETNQDWSLMCPNECPGLDEVWGEEFEKLYASYEKQGRVRKVVKAQQLWYAIIESQTETGT 180
Query: 403 PYMLFKDSCNRKSNQQNLGTIKSSNLCTEIVEFSSPEETAVCNLASIALPRYV 455
PYML+KDSCNRKSNQQNLGTIK SNLCTEIVE++S +E AVCNLAS+AL YV
Sbjct: 181 PYMLYKDSCNRKSNQQNLGTIKCSNLCTEIVEYTSKDEVAVCNLASLALNMYV 233
>UNIPROTKB|Q8SR37 [details] [associations]
symbol:ECU10_0920 "Ribonucleoside-diphosphate reductase
large chain" species:284813 "Encephalitozoon cuniculi GB-M1"
[GO:0004748 "ribonucleoside-diphosphate reductase activity,
thioredoxin disulfide as acceptor" evidence=ISS] [GO:0009263
"deoxyribonucleotide biosynthetic process" evidence=ISS]
InterPro:IPR000788 InterPro:IPR008926 InterPro:IPR013346
InterPro:IPR013509 Pfam:PF00317 Pfam:PF02867 PRINTS:PR01183
PROSITE:PS00089 UniPathway:UPA00326 GO:GO:0005524 GO:GO:0006260
GO:GO:0009263 KO:K10807 eggNOG:COG0209 GO:GO:0005971 GO:GO:0004748
SUPFAM:SSF48168 HOGENOM:HOG000057035 TIGRFAMs:TIGR02506 OMA:YKYGVKT
EMBL:AL590449 RefSeq:NP_586207.1 ProteinModelPortal:Q8SR37
SMR:Q8SR37 STRING:Q8SR37 PRIDE:Q8SR37 GeneID:859856
GenomeReviews:AL590449_GR KEGG:ecu:ECU10_0920 Uniprot:Q8SR37
Length = 768
Score = 1144 (407.8 bits), Expect = 6.3e-214, Sum P(2) = 6.3e-214
Identities = 223/476 (46%), Positives = 323/476 (67%)
Query: 9 RKEPVRFDKITARLKKLSYGLSKEHCDPVLVAQKVCAGVYKGVTTTQLDELAAETAAAMT 68
+ E + D I +R++ L H D + +++ +G + +T + + +ETAA+M
Sbjct: 11 KSEKLGIDLIRSRIEGYVKDLKLRHVDVDELVERIVSGWCEDMTRKETIDYCSETAASMI 70
Query: 69 VNHPDYALLAGRVAVSNLHKITKNSFSETIKDMYNYYNKRSGKKASLVADDVYEIIMKNA 128
HP+Y ++ R+ VS +H+IT +SF E IK Y K G +V++++Y II+++
Sbjct: 71 TKHPEYGQISSRIIVSYIHEITMDSFVEKIK----YIQKHRG----MVSEEMYGIILEHG 122
Query: 129 ACLDGAIIXXXXXXXXXXXXKTLERSYLLKMDSRVVERPQHMLMRVSVGIHKDDTDSALK 188
++G I TL +SYL+K+ ++ERPQ M MRV++ IHK D + +
Sbjct: 123 ETIEGMINYENDFLFSYFGILTLMKSYLIKVGEEIIERPQDMFMRVALQIHKTDFEKVRE 182
Query: 189 TYHLMSQHWFTHATPTLFNAGTPQPQLSSCFLLCMKDDSIEGIYDTLKKCAIISKSAGGI 248
Y+L+S H+FTHATPTL+N+ PQL+SCFL+ ++DSIEG+Y + + AII+K +GGI
Sbjct: 183 VYNLLSGHYFTHATPTLYNSCLKNPQLASCFLITPREDSIEGVYHMINQAAIITKYSGGI 242
Query: 249 GLSIHNIRASGSYIHGTNGSSNGIVPMLQVFNDTARYVDQGGGKRKGAFAIYLEPWHADI 308
GL++H IR+ GS + T G SNGI+P++QV N T RY++QG +R G+ AI+LEPWH +I
Sbjct: 243 GLNLHGIRSKGSSLRSTGGRSNGIIPLIQVLNATKRYINQGAERRPGSIAIFLEPWHMEI 302
Query: 309 FEFLDLRKNQGKEECRARDLFYALWVPDLFMERVRDDGKWSLFCPSDASGLADSWGIEFE 368
F+FL+LRKN G EE RARD+F ALW+ DLFMERV+++ +WSLFCPS A GL+D WG EF
Sbjct: 303 FDFLELRKNTGPEEFRARDIFTALWINDLFMERVKNNEEWSLFCPSQAVGLSDVWGEEFN 362
Query: 369 HLYSQYEEEGRAKMVISARKLWFEILNSQIETGTPYMLFKDSCNRKSNQQNLGTIKSSNL 428
LY +YE+ ++ V+ A+KLW I+ +QIETGTPYM +KD+CNR SNQQ+LGTIKSSNL
Sbjct: 363 ALYCKYEKT-ISRTVVPAQKLWKAIIEAQIETGTPYMCYKDACNRLSNQQHLGTIKSSNL 421
Query: 429 CTEIVEFSSPEETAVCNLASIALPRYVREKGVPVQS--NVSKLVGSRDSKNRLFDF 482
C EIVE+SS EET+VCNLASI LP +V++ ++ V K++ + NR+ DF
Sbjct: 422 CAEIVEYSSGEETSVCNLASICLPMFVKDGWFDFEAFRRVVKILTV--NLNRVIDF 475
Score = 946 (338.1 bits), Expect = 6.3e-214, Sum P(2) = 6.3e-214
Identities = 175/312 (56%), Positives = 227/312 (72%)
Query: 476 KNRLFDFERLAEVTKIITENLNKIIDVNHYPIETTRRSNLRHRPIGIGIQGLADTFILLG 535
K+ FDFE V KI+T NLN++ID N+YP+E RRSN+R+RPIGIG+QGLAD F +L
Sbjct: 449 KDGWFDFEAFRRVVKILTVNLNRVIDFNYYPVEEARRSNMRNRPIGIGVQGLADLFAILR 508
Query: 536 LPFESPEAQQLNKDIFETIYYHALKASAELAVKDGPYETYFGSPMSKGILQVDMWNITPS 595
L FES A+ LN+DIFE +YY A++AS ELA K+GP+ +Y GSP+SKGI ++ S
Sbjct: 509 LAFESDGARSLNQDIFEAMYYSAMEASCELAEKEGPFPSYEGSPISKGIFHFELAGRKAS 568
Query: 596 DRWDWSSLREMISKNGVRNSLLVAPMPTASTSQILGNNECFEPYTSNIYTRRVLSGEFIV 655
WDW LRE I ++GVRNSLL+A MPTA TSQI GNNE FEP+ SNIYTRR +GEF +
Sbjct: 569 GNWDWEGLRERIRRHGVRNSLLIALMPTAGTSQIFGNNEAFEPHASNIYTRRTHAGEFQI 628
Query: 656 VNKHLLKDLTELGLWSHALKTKIIYENGSVSKISEIPEELKAIYKTVWEIKQKTLVDMAA 715
VN+HL+ DL LGLWS+ +K +I GS+ I+ IP E++ IYKT WEIK K+++D+AA
Sbjct: 629 VNQHLVNDLVRLGLWSYEMKNLVIENEGSIQNITSIPHEIREIYKTAWEIKMKSVIDLAA 688
Query: 716 DRGCYIDQSQSLNIHMEQPDHGKLTSLHFYAWSKGMKTGMYYLRTRAAADAIKFTVDTSV 775
DR ++DQSQSLNI + +P + +LTS+HFY + G+KTGMYYLRTR AIKFTVD +
Sbjct: 689 DRQVFVDQSQSLNIFIAKPTYSQLTSMHFYGYHCGLKTGMYYLRTRPITSAIKFTVDKKL 748
Query: 776 LNNEKANRADND 787
++ D D
Sbjct: 749 AEKTLSSMNDTD 760
>UNIPROTKB|F5H861 [details] [associations]
symbol:RRM1 "Ribonucleoside-diphosphate reductase large
subunit" species:9606 "Homo sapiens" [GO:0005971
"ribonucleoside-diphosphate reductase complex" evidence=IEA]
[GO:0006260 "DNA replication" evidence=IEA] [GO:0004748
"ribonucleoside-diphosphate reductase activity, thioredoxin
disulfide as acceptor" evidence=IEA] [GO:0009263
"deoxyribonucleotide biosynthetic process" evidence=IEA]
[GO:0017076 "purine nucleotide binding" evidence=IEA] [GO:0051290
"protein heterotetramerization" evidence=IEA] InterPro:IPR000788
InterPro:IPR013346 Pfam:PF02867 PRINTS:PR01183 PROSITE:PS00089
GO:GO:0006260 GO:GO:0051290 GO:GO:0017076 GO:GO:0009263
GO:GO:0005971 GO:GO:0004748 TIGRFAMs:TIGR02506 HGNC:HGNC:10451
ChiTaRS:RRM1 EMBL:AC015689 IPI:IPI01016072
ProteinModelPortal:F5H861 SMR:F5H861 Ensembl:ENST00000537197
ArrayExpress:F5H861 Bgee:F5H861 Uniprot:F5H861
Length = 454
Score = 1198 (426.8 bits), Expect = 8.3e-164, Sum P(2) = 8.3e-164
Identities = 224/371 (60%), Positives = 283/371 (76%)
Query: 441 TAVCNLASIALPRYVREKGVPVQSNVSKLVGSRDSKNRLFDFERLAEVTKIITENLNKII 500
T C+ + Y + V V + S + + +DF++LAEVTK++ NLNKII
Sbjct: 84 TIKCSNLCTEIVEYTSKDEVAVCNLASLALNMYVTSEHTYDFKKLAEVTKVVVRNLNKII 143
Query: 501 DVNHYPIETTRRSNLRHRPIGIGIQGLADTFILLGLPFESPEAQQLNKDIFETIYYHALK 560
D+N+YP+ SN RHRPIGIG+QGLAD FIL+ PFES EAQ LNK IFETIYY AL+
Sbjct: 144 DINYYPVPEACLSNKRHRPIGIGVQGLADAFILMRYPFESAEAQLLNKQIFETIYYGALE 203
Query: 561 ASAELAVKDGPYETYFGSPMSKGILQVDMWNITPSDRWDWSSLREMISKNGVRNSLLVAP 620
AS +LA + GPYETY GSP+SKGILQ DMWN+TP+D WDW L+E I+K G+RNSLL+AP
Sbjct: 204 ASCDLAKEQGPYETYEGSPVSKGILQYDMWNVTPTDLWDWKVLKEKIAKYGIRNSLLIAP 263
Query: 621 MPTASTSQILGNNECFEPYTSNIYTRRVLSGEFIVVNKHLLKDLTELGLWSHALKTKIIY 680
MPTAST+QILGNNE EPYTSNIYTRRVLSGEF +VN HLLKDLTE GLW +K +II
Sbjct: 264 MPTASTAQILGNNESIEPYTSNIYTRRVLSGEFQIVNPHLLKDLTERGLWHEEMKNQIIA 323
Query: 681 ENGSVSKISEIPEELKAIYKTVWEIKQKTLVDMAADRGCYIDQSQSLNIHMEQPDHGKLT 740
NGS+ I EIP++LK +YKTVWEI QKT++ MAA+RG +IDQSQSLNIH+ +P++GKLT
Sbjct: 324 CNGSIQSIPEIPDDLKQLYKTVWEISQKTVLKMAAERGAFIDQSQSLNIHIAEPNYGKLT 383
Query: 741 SLHFYAWSKGMKTGMYYLRTRAAADAIKFTVDTSVLNN-EKANRADNDVEANLAQVVCSL 799
S+HFY W +G+KTGMYYLRTR AA+ I+FT++ L + EK ++ + + E N A +VCSL
Sbjct: 384 SMHFYGWKQGLKTGMYYLRTRPAANPIQFTLNKEKLKDKEKVSKEEEEKERNTAAMVCSL 443
Query: 800 KNQEECMACGS 810
+N++EC+ CGS
Sbjct: 444 ENRDECLMCGS 454
Score = 418 (152.2 bits), Expect = 8.3e-164, Sum P(2) = 8.3e-164
Identities = 75/117 (64%), Positives = 94/117 (80%)
Query: 339 MERVRDDGKWSLFCPSDASGLADSWGIEFEHLYSQYEEEGRAKMVISARKLWFEILNSQI 398
M+RV + WSL CP++ GL + WG EFE LY+ YE++GR + V+ A++LW+ I+ SQ
Sbjct: 1 MKRVETNQDWSLMCPNECPGLDEVWGEEFEKLYASYEKQGRVRKVVKAQQLWYAIIESQT 60
Query: 399 ETGTPYMLFKDSCNRKSNQQNLGTIKSSNLCTEIVEFSSPEETAVCNLASIALPRYV 455
ETGTPYML+KDSCNRKSNQQNLGTIK SNLCTEIVE++S +E AVCNLAS+AL YV
Sbjct: 61 ETGTPYMLYKDSCNRKSNQQNLGTIKCSNLCTEIVEYTSKDEVAVCNLASLALNMYV 117
>CGD|CAL0002354 [details] [associations]
symbol:RNR3 species:5476 "Candida albicans" [GO:0004748
"ribonucleoside-diphosphate reductase activity, thioredoxin
disulfide as acceptor" evidence=NAS] InterPro:IPR000788
InterPro:IPR008926 InterPro:IPR013346 InterPro:IPR013509
Pfam:PF00317 Pfam:PF02867 PRINTS:PR01183 PROSITE:PS00089
UniPathway:UPA00326 CGD:CAL0002354 Pfam:PF03477 GO:GO:0005524
GO:GO:0006260 KO:K10807 InterPro:IPR005144 PROSITE:PS51161
eggNOG:COG0209 GO:GO:0005971 GO:GO:0004748 SUPFAM:SSF48168
TIGRFAMs:TIGR02506 EMBL:AACQ01000235 EMBL:AACQ01000236
RefSeq:XP_710800.1 RefSeq:XP_710811.1 ProteinModelPortal:Q59M54
SMR:Q59M54 STRING:Q59M54 GeneID:3647580 GeneID:3647591
KEGG:cal:CaO19.13267 KEGG:cal:CaO19.5845 Uniprot:Q59M54
Length = 816
Score = 1301 (463.0 bits), Expect = 1.2e-134, Sum P(2) = 1.2e-134
Identities = 246/389 (63%), Positives = 303/389 (77%)
Query: 384 ISARKLWFEILNSQIETGTPYMLFKDSCNRKSNQQNLGTIKSSNLCTEIVEFSSPEETAV 443
+SA KLW IL+SQ ETG PYML+KD+CN KSNQ+N+GTIKSSNLC EIVE+SSP+ETAV
Sbjct: 381 VSAHKLWLAILHSQTETGGPYMLYKDACNTKSNQKNIGTIKSSNLCCEIVEYSSPKETAV 440
Query: 444 CNLASIALPRYVREKGVPVQSNVSKLVGSRDSKNRLFDFERLAEVTKIITENLNKIIDVN 503
CNLAS+ALP Y++ +G FDFE+L VTK++T NLN++IDV
Sbjct: 441 CNLASLALPTYLK--------TTEDAIG--------FDFEKLHSVTKVLTRNLNRVIDVT 484
Query: 504 HYPIETTRRSNLRHRPIGIGIQGLADTFILLGLPFESPEAQQLNKDIFETIYYHALKASA 563
YP+ET SN RHRPI +G+QGLAD F L LPF+S A+ LN IFETIY+ AL+AS
Sbjct: 485 KYPVETAEYSNKRHRPIALGVQGLADLFAELRLPFDSAMAKTLNIQIFETIYHAALEASV 544
Query: 564 ELAVKDGPYETYFGSPMSKGILQVDMWNITPSDRWDWSSLREMISKNGVRNSLLVAPMPT 623
ELA+K+GPYET+ GSP SKGILQ DMW PS +DW +L++ I G+RNSLLVAPMPT
Sbjct: 545 ELAMKEGPYETFQGSPASKGILQFDMWKHKPSPMYDWHALKDNIQNFGLRNSLLVAPMPT 604
Query: 624 ASTSQILGNNECFEPYTSNIYTRRVLSGEFIVVNKHLLKDLTELGLWSHALKTKIIYENG 683
ASTSQILG NECFEPYTSN+Y RRVL+GE+ +VNK+L+KDL +LG+W A++ KII ENG
Sbjct: 605 ASTSQILGFNECFEPYTSNLYNRRVLAGEYQIVNKYLIKDLMDLGIWDSAMRNKIIMENG 664
Query: 684 SVSKISEIPEELKAIYKTVWEIKQKTLVDMAADRGCYIDQSQSLNIHMEQPDHGKLTSLH 743
S+ I IP+E+K +YKTVWE+ QK ++DMAADRG ++DQSQS+NIH+ P GKLTS H
Sbjct: 665 SIQNIPNIPDEIKQLYKTVWELSQKVIIDMAADRGKFVDQSQSMNIHLRNPTIGKLTSCH 724
Query: 744 FYAWSKGMKTGMYYLRTRAAADAIKFTVD 772
FYAW KG+KTGMYYLRT+AA+ AI+FTVD
Sbjct: 725 FYAWEKGLKTGMYYLRTQAASRAIQFTVD 753
Score = 1244 (443.0 bits), Expect = 1.3e-128, Sum P(2) = 1.3e-128
Identities = 248/500 (49%), Positives = 337/500 (67%)
Query: 8 GRKEPVRFDKITARLKKLSYGLSKEHCDPVLVAQKVCAGVYKGVTTTQLDELAAETAAAM 67
G +E KI L+++S+ L D ++ + V G+ +T +L AE A+
Sbjct: 9 GEEEDFDSVKIHKLLEEVSFNLGDLDLDQIV--ESVQRGLPSSLTIEELYTFIAEVIASR 66
Query: 68 TVNHPDYALLAGRVAVSNLHKITKNSFSETIKDMYNYYNKRSGKKASLVADDVYEIIMKN 127
+ HPDYA+LAGR+ L+ SFSE ++ + Y ++S S ++ Y+++ K+
Sbjct: 67 VIYHPDYAILAGRIETRKLYLKVPYSFSENVERLRKYRPRKSNSY-SPISSAFYKVVKKH 125
Query: 128 AACLDGAIIXXXXXXXXXXXXKTLERSYLLKMDSRVVERPQHMLMRVSVGIHKDDTDSAL 187
LD I KTLE SYLLK+D V E PQ++ MRV++GIH++D ++
Sbjct: 126 GEFLDKVIDKTRDYNLTYFGIKTLESSYLLKIDGEVAELPQYLFMRVAIGIHQNDINAIA 185
Query: 188 KTYHLMSQHWFTHATPTLFNAGTPQPQLSSCFLLCMKDDSIEGIYDTLKKCAIISKSAGG 247
+TY LMSQ +F HA+PTL+NAG+ LSSCFL+ MKDDSI+GI+ TL + A+ISK++GG
Sbjct: 186 ETYDLMSQKYFIHASPTLYNAGSEFNYLSSCFLVAMKDDSIDGIFKTLNEAALISKASGG 245
Query: 248 IGLSIHNIRASGSYIHGTNGSSNGIVPMLQVFNDTARYVDQGGGKRKGAFAIYLEPWHAD 307
IG+ +HNIR++GSYI TNG+SNG+VPML+V+N+TARYVDQGGGKR GAFAIY+EPWH D
Sbjct: 246 IGIHVHNIRSNGSYIASTNGNSNGLVPMLRVYNNTARYVDQGGGKRPGAFAIYIEPWHGD 305
Query: 308 IFEFLDLRKNQGKEECRARDLFYALWVPDLFMERVRDDGKWSLFCPSDASGLADSWGIEF 367
IF+ L++RKN G EE R RDLFY LW+PDLFM+RV+++ W+LF P++A GL+D +G EF
Sbjct: 306 IFDILEMRKNHGNEEMRTRDLFYGLWIPDLFMKRVKENSDWTLFSPNEAVGLSDVYGEEF 365
Query: 368 EHLYSQYEEEGRAKMVISARKLWFEILNSQIETGTPYMLFKDSCNRKSNQQNLGTIKSSN 427
E LY +YE EG V SA KLW IL+SQ ETG PYML+KD+CN KSNQ+N+GTIKSSN
Sbjct: 366 EKLYCKYESEGFGTKV-SAHKLWLAILHSQTETGGPYMLYKDACNTKSNQKNIGTIKSSN 424
Query: 428 LCTEIVEFSSPEETAVCNLASIALPRYVREKGVPVQSNVSKLVGSRDSKNRLFDFERLAE 487
LC EIVE+SSP+ETAVCNLAS+ALP Y++ + + KL R + R+ +
Sbjct: 425 LCCEIVEYSSPKETAVCNLASLALPTYLKTTEDAIGFDFEKLHSVTKVLTR--NLNRVID 482
Query: 488 VTKIITENLNKIIDVNHYPI 507
VTK E + + H PI
Sbjct: 483 VTKYPVETA-EYSNKRHRPI 501
Score = 39 (18.8 bits), Expect = 1.2e-134, Sum P(2) = 1.2e-134
Identities = 4/14 (28%), Positives = 10/14 (71%)
Query: 795 VVCSLKNQEECMAC 808
+ C++++ E C +C
Sbjct: 801 ITCNIEDLESCQSC 814
>UNIPROTKB|Q59M54 [details] [associations]
symbol:RNR3 "Ribonucleoside-diphosphate reductase"
species:237561 "Candida albicans SC5314" [GO:0004748
"ribonucleoside-diphosphate reductase activity, thioredoxin
disulfide as acceptor" evidence=NAS] InterPro:IPR000788
InterPro:IPR008926 InterPro:IPR013346 InterPro:IPR013509
Pfam:PF00317 Pfam:PF02867 PRINTS:PR01183 PROSITE:PS00089
UniPathway:UPA00326 CGD:CAL0002354 Pfam:PF03477 GO:GO:0005524
GO:GO:0006260 KO:K10807 InterPro:IPR005144 PROSITE:PS51161
eggNOG:COG0209 GO:GO:0005971 GO:GO:0004748 SUPFAM:SSF48168
TIGRFAMs:TIGR02506 EMBL:AACQ01000235 EMBL:AACQ01000236
RefSeq:XP_710800.1 RefSeq:XP_710811.1 ProteinModelPortal:Q59M54
SMR:Q59M54 STRING:Q59M54 GeneID:3647580 GeneID:3647591
KEGG:cal:CaO19.13267 KEGG:cal:CaO19.5845 Uniprot:Q59M54
Length = 816
Score = 1301 (463.0 bits), Expect = 1.2e-134, Sum P(2) = 1.2e-134
Identities = 246/389 (63%), Positives = 303/389 (77%)
Query: 384 ISARKLWFEILNSQIETGTPYMLFKDSCNRKSNQQNLGTIKSSNLCTEIVEFSSPEETAV 443
+SA KLW IL+SQ ETG PYML+KD+CN KSNQ+N+GTIKSSNLC EIVE+SSP+ETAV
Sbjct: 381 VSAHKLWLAILHSQTETGGPYMLYKDACNTKSNQKNIGTIKSSNLCCEIVEYSSPKETAV 440
Query: 444 CNLASIALPRYVREKGVPVQSNVSKLVGSRDSKNRLFDFERLAEVTKIITENLNKIIDVN 503
CNLAS+ALP Y++ +G FDFE+L VTK++T NLN++IDV
Sbjct: 441 CNLASLALPTYLK--------TTEDAIG--------FDFEKLHSVTKVLTRNLNRVIDVT 484
Query: 504 HYPIETTRRSNLRHRPIGIGIQGLADTFILLGLPFESPEAQQLNKDIFETIYYHALKASA 563
YP+ET SN RHRPI +G+QGLAD F L LPF+S A+ LN IFETIY+ AL+AS
Sbjct: 485 KYPVETAEYSNKRHRPIALGVQGLADLFAELRLPFDSAMAKTLNIQIFETIYHAALEASV 544
Query: 564 ELAVKDGPYETYFGSPMSKGILQVDMWNITPSDRWDWSSLREMISKNGVRNSLLVAPMPT 623
ELA+K+GPYET+ GSP SKGILQ DMW PS +DW +L++ I G+RNSLLVAPMPT
Sbjct: 545 ELAMKEGPYETFQGSPASKGILQFDMWKHKPSPMYDWHALKDNIQNFGLRNSLLVAPMPT 604
Query: 624 ASTSQILGNNECFEPYTSNIYTRRVLSGEFIVVNKHLLKDLTELGLWSHALKTKIIYENG 683
ASTSQILG NECFEPYTSN+Y RRVL+GE+ +VNK+L+KDL +LG+W A++ KII ENG
Sbjct: 605 ASTSQILGFNECFEPYTSNLYNRRVLAGEYQIVNKYLIKDLMDLGIWDSAMRNKIIMENG 664
Query: 684 SVSKISEIPEELKAIYKTVWEIKQKTLVDMAADRGCYIDQSQSLNIHMEQPDHGKLTSLH 743
S+ I IP+E+K +YKTVWE+ QK ++DMAADRG ++DQSQS+NIH+ P GKLTS H
Sbjct: 665 SIQNIPNIPDEIKQLYKTVWELSQKVIIDMAADRGKFVDQSQSMNIHLRNPTIGKLTSCH 724
Query: 744 FYAWSKGMKTGMYYLRTRAAADAIKFTVD 772
FYAW KG+KTGMYYLRT+AA+ AI+FTVD
Sbjct: 725 FYAWEKGLKTGMYYLRTQAASRAIQFTVD 753
Score = 1244 (443.0 bits), Expect = 1.3e-128, Sum P(2) = 1.3e-128
Identities = 248/500 (49%), Positives = 337/500 (67%)
Query: 8 GRKEPVRFDKITARLKKLSYGLSKEHCDPVLVAQKVCAGVYKGVTTTQLDELAAETAAAM 67
G +E KI L+++S+ L D ++ + V G+ +T +L AE A+
Sbjct: 9 GEEEDFDSVKIHKLLEEVSFNLGDLDLDQIV--ESVQRGLPSSLTIEELYTFIAEVIASR 66
Query: 68 TVNHPDYALLAGRVAVSNLHKITKNSFSETIKDMYNYYNKRSGKKASLVADDVYEIIMKN 127
+ HPDYA+LAGR+ L+ SFSE ++ + Y ++S S ++ Y+++ K+
Sbjct: 67 VIYHPDYAILAGRIETRKLYLKVPYSFSENVERLRKYRPRKSNSY-SPISSAFYKVVKKH 125
Query: 128 AACLDGAIIXXXXXXXXXXXXKTLERSYLLKMDSRVVERPQHMLMRVSVGIHKDDTDSAL 187
LD I KTLE SYLLK+D V E PQ++ MRV++GIH++D ++
Sbjct: 126 GEFLDKVIDKTRDYNLTYFGIKTLESSYLLKIDGEVAELPQYLFMRVAIGIHQNDINAIA 185
Query: 188 KTYHLMSQHWFTHATPTLFNAGTPQPQLSSCFLLCMKDDSIEGIYDTLKKCAIISKSAGG 247
+TY LMSQ +F HA+PTL+NAG+ LSSCFL+ MKDDSI+GI+ TL + A+ISK++GG
Sbjct: 186 ETYDLMSQKYFIHASPTLYNAGSEFNYLSSCFLVAMKDDSIDGIFKTLNEAALISKASGG 245
Query: 248 IGLSIHNIRASGSYIHGTNGSSNGIVPMLQVFNDTARYVDQGGGKRKGAFAIYLEPWHAD 307
IG+ +HNIR++GSYI TNG+SNG+VPML+V+N+TARYVDQGGGKR GAFAIY+EPWH D
Sbjct: 246 IGIHVHNIRSNGSYIASTNGNSNGLVPMLRVYNNTARYVDQGGGKRPGAFAIYIEPWHGD 305
Query: 308 IFEFLDLRKNQGKEECRARDLFYALWVPDLFMERVRDDGKWSLFCPSDASGLADSWGIEF 367
IF+ L++RKN G EE R RDLFY LW+PDLFM+RV+++ W+LF P++A GL+D +G EF
Sbjct: 306 IFDILEMRKNHGNEEMRTRDLFYGLWIPDLFMKRVKENSDWTLFSPNEAVGLSDVYGEEF 365
Query: 368 EHLYSQYEEEGRAKMVISARKLWFEILNSQIETGTPYMLFKDSCNRKSNQQNLGTIKSSN 427
E LY +YE EG V SA KLW IL+SQ ETG PYML+KD+CN KSNQ+N+GTIKSSN
Sbjct: 366 EKLYCKYESEGFGTKV-SAHKLWLAILHSQTETGGPYMLYKDACNTKSNQKNIGTIKSSN 424
Query: 428 LCTEIVEFSSPEETAVCNLASIALPRYVREKGVPVQSNVSKLVGSRDSKNRLFDFERLAE 487
LC EIVE+SSP+ETAVCNLAS+ALP Y++ + + KL R + R+ +
Sbjct: 425 LCCEIVEYSSPKETAVCNLASLALPTYLKTTEDAIGFDFEKLHSVTKVLTR--NLNRVID 482
Query: 488 VTKIITENLNKIIDVNHYPI 507
VTK E + + H PI
Sbjct: 483 VTKYPVETA-EYSNKRHRPI 501
Score = 39 (18.8 bits), Expect = 1.2e-134, Sum P(2) = 1.2e-134
Identities = 4/14 (28%), Positives = 10/14 (71%)
Query: 795 VVCSLKNQEECMAC 808
+ C++++ E C +C
Sbjct: 801 ITCNIEDLESCQSC 814
>TIGR_CMR|CBU_1553 [details] [associations]
symbol:CBU_1553 "ribonucleoside-diphosphate reductase,
alpha subunit" species:227377 "Coxiella burnetii RSA 493"
[GO:0004748 "ribonucleoside-diphosphate reductase activity,
thioredoxin disulfide as acceptor" evidence=ISS] [GO:0009265
"2'-deoxyribonucleotide biosynthetic process" evidence=ISS]
InterPro:IPR000788 InterPro:IPR008926 InterPro:IPR013344
InterPro:IPR013346 InterPro:IPR013509 Pfam:PF00317 Pfam:PF02867
PRINTS:PR01183 PROSITE:PS00089 UniPathway:UPA00326 Pfam:PF03477
GO:GO:0005524 GO:GO:0006260 EMBL:AE016828 GenomeReviews:AE016828_GR
GO:GO:0031419 InterPro:IPR005144 PROSITE:PS51161 KO:K00525
GO:GO:0005971 GO:GO:0004748 SUPFAM:SSF48168 TIGRFAMs:TIGR02504
OMA:PQARNSN TIGRFAMs:TIGR02506 HOGENOM:HOG000057036
ProtClustDB:PRK07207 RefSeq:NP_820536.1 ProteinModelPortal:Q83BF6
PRIDE:Q83BF6 GeneID:1209463 KEGG:cbu:CBU_1553 PATRIC:17931867
BioCyc:CBUR227377:GJ7S-1534-MONOMER Uniprot:Q83BF6
Length = 941
Score = 1282 (456.3 bits), Expect = 2.3e-133, Sum P(2) = 2.3e-133
Identities = 305/803 (37%), Positives = 454/803 (56%)
Query: 32 EHCDPVLVAQKVCAGVYKGVTTTQLDELAAETAAAMTVNHPDYALLAGRVAVSNLHKITK 91
E D V + ++ ++ GV + + TA + N P+Y + R+ + +L++
Sbjct: 171 EGVDAVKILEETKNNLFDGVALKDVYKGLVMTARTLVENEPNYTYVTARLLLHDLYREVL 230
Query: 92 NSFS--ETI--KDMYNYYNK--RSGKKASLVADDVYEIIMK-NAACLDGAIIXXXXXXXX 144
N + + + +D+ +YY + ++ + + + ++ + + L A+
Sbjct: 231 NGLNLPQDLMHEDIAHYYPEAFKNFIRHGIETEHLHPNLQTFDLNYLAQALKPERDQQFT 290
Query: 145 XXXXKTLERSYLLKMDSRVVERPQHMLMRVSVGIHKDDTDS----ALKTYHLMSQHWFTH 200
+TL YL+ +E PQ MRV++G+ + + ++ A++ Y+++S F
Sbjct: 291 YLSLQTLYDRYLIHHQQVRIELPQVFFMRVAMGLAQSEGEARNQRAVEFYNVLSSFDFMS 350
Query: 201 ATPTLFNAGTPQPQLSSCFLLCMKDDSIEGIYDTLKKCAIISKSAGGIGLSIHNIRASGS 260
+TPTLFN+GT PQLSSCFL + D S++GIY LK A++SK AGG+G +RA G+
Sbjct: 351 STPTLFNSGTVFPQLSSCFLTTVPD-SLDGIYGALKDNALLSKYAGGLGNDWTPVRAMGA 409
Query: 261 YIHGTNGSSNGIVPMLQVFNDTARYVDQGGGKRKGAFAIYLEPWHADIFEFLDLRKNQGK 320
YI GTNG S G+VP L V + TA V+QGG KRKGA YLE WH DI EFLDLRKN G
Sbjct: 410 YIKGTNGKSLGVVPFLNVADATAIAVNQGG-KRKGAVCAYLETWHMDIEEFLDLRKNTGD 468
Query: 321 EECRARDLFYALWVPDLFMERVRDDGKWSLFCPSDASGLADSWGIEFEHLYSQYEEEG-R 379
+ R D+ A W+PDLFM+RV +DG+W+LF P + L D +G FE Y YEE+ R
Sbjct: 469 DRRRTHDMNTANWIPDLFMKRVFEDGQWTLFSPDEVPDLHDKFGEAFEIAYVAYEEKAHR 528
Query: 380 AKM---VISARKLWFEILNSQIETGTPYMLFKDSCNRKSNQQNLGTIKSSNLCTEIVEFS 436
++ ISA LW +IL+ ETG P++ FKD+CN +S QQ++G I SSNLCTEI +
Sbjct: 529 GEIRSKTISALSLWRKILSMLFETGHPWVTFKDACNIRSPQQHVGVIHSSNLCTEITLNT 588
Query: 437 SPEETAVCNLASIALPRYVREKGVPVQSNVSKLVGSRDSKNRLFDFERLAEVTKIITENL 496
S EE AVCNL SI L ++++ KL D E+LA TK L
Sbjct: 589 SREEIAVCNLGSINLVNHMKD---------GKL-----------DTEKLARTTKTAIRML 628
Query: 497 NKIIDVNHYPIETTRRSNLRHRPIGIGIQGLADTFILLGLPFESPEAQQLNKDIFETIYY 556
+ +ID+N+Y + R SNL+HRPIG+G+ G D L +P+ S A Q ETI Y
Sbjct: 629 DNVIDINYYSVPQARTSNLKHRPIGLGLMGFQDALYLQNIPYASEAAVQFADQSMETISY 688
Query: 557 HALKASAELAVKDGPYETYFGSPMSKGILQVDMWNITPSDRW-----------DWSSLRE 605
+A++AS ELA + GPYET+ S S+GIL +D + R DW++LR+
Sbjct: 689 YAIQASMELAKERGPYETFNNSLWSQGILPIDSIQLLKKSRGKYFEQNTDQTLDWNALRK 748
Query: 606 MISKNGVRNSLLVAPMPTASTSQILGNNECFEPYTSNIYTRRVLSGEFIVVNKHLLKDLT 665
+ +G+RNS ++A PTA+ S I G ++ EP N++ + LSGEF V+N +L+++L
Sbjct: 749 QVVAHGMRNSNVMAIAPTATISNICGISQSIEPTYQNLFVKSNLSGEFTVINPYLVRELK 808
Query: 666 ELGLWSHALKTKIIYENGSVSKISEIPEELKAIYKTVWEIKQKTLVDMAADRGCYIDQSQ 725
LW + + + Y NGSV KI IP ELK +Y T +E++ + LV+ A+ R +IDQ+Q
Sbjct: 809 SRQLWDNVMVHDLKYYNGSVQKIDRIPAELKKLYATAFEVEPRWLVEAASRRQKWIDQAQ 868
Query: 726 SLNIHMEQPDHGKLTSLHFYAWSKGMKTGMYYLRTRAAADAIKFTVDTSVLNNEKANRAD 785
SLN++M +P KL L+ AW +G+KT YYLR+ A K T+ + LN A
Sbjct: 869 SLNLYMAEPSGKKLDVLYRMAWLRGLKT-TYYLRSMGATGTEKATIHDTTLN---AVTGQ 924
Query: 786 NDVEANLAQVVCSLKNQEECMAC 808
N+ A C++ + +C AC
Sbjct: 925 NNPNA------CAI-DDPDCEAC 940
Score = 46 (21.3 bits), Expect = 2.3e-133, Sum P(2) = 2.3e-133
Identities = 10/22 (45%), Positives = 14/22 (63%)
Query: 3 VIKRDGRKEPVRFDKITARLKK 24
V+KRDGR ++IT +KK
Sbjct: 32 VVKRDGRVVKYDANRITIAMKK 53
>UNIPROTKB|Q886B0 [details] [associations]
symbol:nrdA "Ribonucleoside-diphosphate reductase"
species:223283 "Pseudomonas syringae pv. tomato str. DC3000"
[GO:0004748 "ribonucleoside-diphosphate reductase activity,
thioredoxin disulfide as acceptor" evidence=ISS] [GO:0009265
"2'-deoxyribonucleotide biosynthetic process" evidence=ISS]
InterPro:IPR000788 InterPro:IPR008926 InterPro:IPR013346
InterPro:IPR013509 Pfam:PF00317 Pfam:PF02867 PRINTS:PR01183
PROSITE:PS00089 UniPathway:UPA00326 Pfam:PF03477 GO:GO:0005524
GO:GO:0006260 EMBL:AE016853 GenomeReviews:AE016853_GR
InterPro:IPR005144 PROSITE:PS51161 GO:GO:0009265 eggNOG:COG0209
KO:K00525 GO:GO:0005971 GO:GO:0004748 SUPFAM:SSF48168 OMA:PQARNSN
TIGRFAMs:TIGR02506 HOGENOM:HOG000057036 ProtClustDB:PRK07207
RefSeq:NP_791496.1 ProteinModelPortal:Q886B0 GeneID:1183308
KEGG:pst:PSPTO_1671 PATRIC:19994588
BioCyc:PSYR223283:GJIX-1701-MONOMER Uniprot:Q886B0
Length = 970
Score = 1249 (444.7 bits), Expect = 5.4e-130, Sum P(2) = 5.4e-130
Identities = 300/802 (37%), Positives = 431/802 (53%)
Query: 7 DGRKEPVRFDKITARLKKLSYGLSKEHCDPVLVAQKVCAGVYKGVTTTQLDELAAETAAA 66
DG P+ ++ + + GL++ D L+ + +Y GV ++ TA
Sbjct: 153 DGSFAPLDMGRLNTIVTEACEGLAEVDAD--LIQTETLKNLYDGVALKDVNTALVMTART 210
Query: 67 MTVNHPDYALLAGRVAVSNLHK----ITKNSFSETIKDMYNYYNKR------SGKKASLV 116
+ P+Y+ + R+ + L + S T +M + Y K +G K L+
Sbjct: 211 LVEREPNYSFVTARLLMDTLRAEGLGFLGVADSATHHEMADLYAKALPAYVATGIKFELL 270
Query: 117 ADDVYEIIMKNAACLDGAIIXXXXXXXXXXXXKTLERSYLLKMDSRVVERPQHMLMRVSV 176
+ E ++ L AI +TL Y + D E PQ MRV++
Sbjct: 271 NPVLAEFDLEK---LGKAINHERDQQFTYLGLQTLYDRYFIHKDGVRFELPQIFFMRVAM 327
Query: 177 GI---HKDDTDSALKTYHLMSQHWFTHATPTLFNAGTPQPQLSSCFLLCMKDDSIEGIYD 233
G+ K D A++ Y+L+S + +TPTLFNAGT +PQLSSC+L + DD + GIY
Sbjct: 328 GLAIEEKAREDRAIEFYNLLSSFDYMSSTPTLFNAGTLRPQLSSCYLTTVPDD-LSGIYH 386
Query: 234 TLKKCAIISKSAGGIGLSIHNIRASGSYIHGTNGSSNGIVPMLQVFNDTARYVDQGGGKR 293
+ A++SK AGG+G +RA GSYI GTNG S G+VP L+V NDTA V+QGG KR
Sbjct: 387 AIHDNAMLSKFAGGLGNDWTPVRALGSYIKGTNGKSQGVVPFLKVVNDTAVAVNQGG-KR 445
Query: 294 KGAFAIYLEPWHADIFEFLDLRKNQGKEECRARDLFYALWVPDLFMERVRDDGKWSLFCP 353
KGA YLE WH DI EF++LRKN G + R D+ A W+PDLFM+RV DDG W+LF P
Sbjct: 446 KGAVCAYLETWHMDIEEFIELRKNTGDDRRRTHDMNTANWIPDLFMKRVFDDGPWTLFSP 505
Query: 354 SDASGLADSWGIEFEHLYSQYEE----EGRAKM--VISARKLWFEILNSQIETGTPYMLF 407
S+ L D G F+ Y YE G+ K+ I A+ LW ++L+ ETG P++ F
Sbjct: 506 SEVPDLHDLTGKAFQERYEYYEALTEYPGKVKLFKTIQAKDLWRKMLSMLFETGHPWLTF 565
Query: 408 KDSCNRKSNQQNLGTIKSSNLCTEIVEFSSPEETAVCNLASIALPRYVREKGVPVQSNVS 467
KD CN +S QQ++G + SSNLCTEI ++ +E AVCNL SI LP ++
Sbjct: 566 KDPCNLRSPQQHVGVVHSSNLCTEITLNTNKDEIAVCNLGSINLPNHI------------ 613
Query: 468 KLVGSRDSKNRLFDFERLAEVTKIITENLNKIIDVNHYPIETTRRSNLRHRPIGIGIQGL 527
N D ++L + L+ +ID+N+Y + R SNLRHRP+G+GI G
Sbjct: 614 --------VNGKLDTDKLKRTIDVAVRMLDNVIDINYYSVPQARNSNLRHRPVGLGIMGF 665
Query: 528 ADTFILLGLPFESPEAQQLNKDIFETIYYHALKASAELAVKDGPYETYFGSPMSKGILQV 587
D L +P+ S A Q E + Y+A++AS +LA + G YET+ GS S+GIL +
Sbjct: 666 QDALYLQHIPYGSDAAVQFADSSMEAVSYYAIQASCDLADERGAYETFQGSLWSQGILPL 725
Query: 588 DMWNITPSDRW------------DWSSLREMISKNGVRNSLLVAPMPTASTSQILGNNEC 635
D I R DW+ +R + K G+RNS ++A PTA+ + I G ++
Sbjct: 726 DSQQILIEQRGQKYIDVDLKESLDWAPVRARVQK-GIRNSNIMAIAPTATIANITGVSQS 784
Query: 636 FEPYTSNIYTRRVLSGEFIVVNKHLLKDLTELGLWSHALKTKIIYENGSVSKISEIPEEL 695
EP N+Y + LSGEF V+N +L++DL LW + + Y +GSV +I IP+EL
Sbjct: 785 IEPTYQNLYVKSNLSGEFTVINPYLVRDLKARDLWDSVMINDLKYYDGSVQQIERIPQEL 844
Query: 696 KAIYKTVWEIKQKTLVDMAADRGCYIDQSQSLNIHMEQPDHGKLTSLHFYAWSKGMKTGM 755
K +Y T +E+ K +VD A+ R +IDQ+QSLN+++ KL + AW +G+KT
Sbjct: 845 KELYATAFEVDTKWIVDAASRRQKWIDQAQSLNLYIAGASGKKLDVTYRMAWYRGLKT-T 903
Query: 756 YYLRTRAAADAIKFTVDTSVLN 777
YYLR AA K TV+T LN
Sbjct: 904 YYLRALAATSTEKSTVNTGKLN 925
Score = 47 (21.6 bits), Expect = 5.4e-130, Sum P(2) = 5.4e-130
Identities = 11/22 (50%), Positives = 13/22 (59%)
Query: 3 VIKRDGRKEPVRFDKITARLKK 24
VIKR+G P DKIT + K
Sbjct: 34 VIKRNGTVVPYTDDKITVAITK 55
>UNIPROTKB|Q48FF6 [details] [associations]
symbol:nrdA "Ribonucleoside-diphosphate reductase"
species:264730 "Pseudomonas syringae pv. phaseolicola 1448A"
[GO:0004748 "ribonucleoside-diphosphate reductase activity,
thioredoxin disulfide as acceptor" evidence=ISS] [GO:0009265
"2'-deoxyribonucleotide biosynthetic process" evidence=ISS]
InterPro:IPR000788 InterPro:IPR008926 InterPro:IPR013346
InterPro:IPR013509 Pfam:PF00317 Pfam:PF02867 PRINTS:PR01183
PROSITE:PS00089 UniPathway:UPA00326 Pfam:PF03477 GO:GO:0005524
GO:GO:0006260 EMBL:CP000058 GenomeReviews:CP000058_GR
InterPro:IPR005144 PROSITE:PS51161 GO:GO:0009265 eggNOG:COG0209
KO:K00525 GO:GO:0005971 GO:GO:0004748 SUPFAM:SSF48168 OMA:PQARNSN
TIGRFAMs:TIGR02506 RefSeq:YP_275880.1 STRING:Q48FF6 GeneID:3557025
KEGG:psp:PSPPH_3738 PATRIC:19976913 HOGENOM:HOG000057036
ProtClustDB:PRK07207 Uniprot:Q48FF6
Length = 970
Score = 1242 (442.3 bits), Expect = 3.0e-129, Sum P(2) = 3.0e-129
Identities = 299/802 (37%), Positives = 430/802 (53%)
Query: 7 DGRKEPVRFDKITARLKKLSYGLSKEHCDPVLVAQKVCAGVYKGVTTTQLDELAAETAAA 66
DG P+ ++ + + L++ D L+ + +Y GV ++ TA
Sbjct: 153 DGSFAPLDMGRLNTIVTEACESLAE--VDANLIQTETLKNLYDGVALKDVNTALVMTART 210
Query: 67 MTVNHPDYALLAGRVAVSNLHK----ITKNSFSETIKDMYNYYNKR------SGKKASLV 116
+ P+Y+ + R+ + L + S T +M + Y K +G K L+
Sbjct: 211 LVEREPNYSFVTARLLMDTLRAEGLGFLGVADSATHHEMADLYAKALPAYVATGIKFELL 270
Query: 117 ADDVYEIIMKNAACLDGAIIXXXXXXXXXXXXKTLERSYLLKMDSRVVERPQHMLMRVSV 176
+ E ++ L AI +TL Y + D E PQ MRV++
Sbjct: 271 NPVLAEFDLEK---LGKAINHERDQQFTYLGLQTLYDRYFIHKDGVRFELPQIFFMRVAM 327
Query: 177 GI---HKDDTDSALKTYHLMSQHWFTHATPTLFNAGTPQPQLSSCFLLCMKDDSIEGIYD 233
G+ K D A++ Y+L+S + +TPTLFNAGT +PQLSSC+L + DD + GIY
Sbjct: 328 GLAIEEKAREDRAIEFYNLLSSFDYMSSTPTLFNAGTLRPQLSSCYLTTVPDD-LSGIYH 386
Query: 234 TLKKCAIISKSAGGIGLSIHNIRASGSYIHGTNGSSNGIVPMLQVFNDTARYVDQGGGKR 293
+ A++SK AGG+G +RA GSYI GTNG S G+VP L+V NDTA V+QGG KR
Sbjct: 387 AIHDNAMLSKFAGGLGNDWTPVRALGSYIKGTNGKSQGVVPFLKVVNDTAVAVNQGG-KR 445
Query: 294 KGAFAIYLEPWHADIFEFLDLRKNQGKEECRARDLFYALWVPDLFMERVRDDGKWSLFCP 353
KGA YLE WH DI EF++LRKN G + R D+ A W+PDLFM+RV DDG W+LF P
Sbjct: 446 KGAVCAYLETWHMDIEEFIELRKNTGDDRRRTHDMNTANWIPDLFMKRVFDDGPWTLFSP 505
Query: 354 SDASGLADSWGIEFEHLYSQYEE----EGRAKM--VISARKLWFEILNSQIETGTPYMLF 407
S+ L D G F+ Y YE G+ K+ I A+ LW ++L+ ETG P++ F
Sbjct: 506 SEVPDLHDLTGKAFQERYEYYEALTEYPGKVKLFKTIQAKDLWRKMLSMLFETGHPWLTF 565
Query: 408 KDSCNRKSNQQNLGTIKSSNLCTEIVEFSSPEETAVCNLASIALPRYVREKGVPVQSNVS 467
KD CN +S QQ++G + SSNLCTEI ++ +E AVCNL SI LP ++
Sbjct: 566 KDPCNLRSPQQHVGVVHSSNLCTEITLNTNKDEIAVCNLGSINLPNHI------------ 613
Query: 468 KLVGSRDSKNRLFDFERLAEVTKIITENLNKIIDVNHYPIETTRRSNLRHRPIGIGIQGL 527
N D ++L + L+ +ID+N+Y + + SNLRHRP+G+GI G
Sbjct: 614 --------VNGKLDTDKLKRTVDVAVRMLDNVIDINYYSVPQAKNSNLRHRPVGLGIMGF 665
Query: 528 ADTFILLGLPFESPEAQQLNKDIFETIYYHALKASAELAVKDGPYETYFGSPMSKGILQV 587
D L +P+ S A Q E + Y+A++AS +LA + G YET+ GS SKGIL +
Sbjct: 666 QDALYLQHIPYGSDAAVQFADTSMEAVSYYAIQASCDLADERGAYETFQGSLWSKGILPL 725
Query: 588 DMWNITPSDRW------------DWSSLREMISKNGVRNSLLVAPMPTASTSQILGNNEC 635
D I R DW+ +R + K G+RNS ++A PTA+ + I G ++
Sbjct: 726 DSQQILIEQRGEKYIDVDLKETLDWAPVRARVQK-GIRNSNIMAIAPTATIANITGVSQS 784
Query: 636 FEPYTSNIYTRRVLSGEFIVVNKHLLKDLTELGLWSHALKTKIIYENGSVSKISEIPEEL 695
EP N+Y + LSGEF V+N +L++DL LW + + Y +GSV +I IP+EL
Sbjct: 785 IEPTYQNLYVKSNLSGEFTVINPYLVRDLKARDLWDSVMINDLKYYDGSVQQIERIPQEL 844
Query: 696 KAIYKTVWEIKQKTLVDMAADRGCYIDQSQSLNIHMEQPDHGKLTSLHFYAWSKGMKTGM 755
K +Y T +E+ K +VD A+ R +IDQ+QSLN+++ KL + AW +G+KT
Sbjct: 845 KELYATAFEVDTKWIVDAASRRQKWIDQAQSLNLYIAGASGKKLDVTYRMAWYRGLKT-T 903
Query: 756 YYLRTRAAADAIKFTVDTSVLN 777
YYLR AA K TV+T LN
Sbjct: 904 YYLRALAATSTEKSTVNTGKLN 925
Score = 47 (21.6 bits), Expect = 3.0e-129, Sum P(2) = 3.0e-129
Identities = 11/22 (50%), Positives = 13/22 (59%)
Query: 3 VIKRDGRKEPVRFDKITARLKK 24
VIKR+G P DKIT + K
Sbjct: 34 VIKRNGTVVPYTDDKITVAITK 55
>UNIPROTKB|Q607W9 [details] [associations]
symbol:nrdA "Ribonucleoside-diphosphate reductase"
species:243233 "Methylococcus capsulatus str. Bath" [GO:0004748
"ribonucleoside-diphosphate reductase activity, thioredoxin
disulfide as acceptor" evidence=ISS] [GO:0009265
"2'-deoxyribonucleotide biosynthetic process" evidence=ISS]
InterPro:IPR000788 InterPro:IPR008926 InterPro:IPR013346
InterPro:IPR013509 Pfam:PF00317 Pfam:PF02867 PRINTS:PR01183
PROSITE:PS00089 UniPathway:UPA00326 Pfam:PF03477 GO:GO:0005524
GO:GO:0006260 EMBL:AE017282 GenomeReviews:AE017282_GR
InterPro:IPR005144 PROSITE:PS51161 GO:GO:0009265 KO:K00525
GO:GO:0005971 GO:GO:0004748 SUPFAM:SSF48168 OMA:PQARNSN
TIGRFAMs:TIGR02506 HOGENOM:HOG000057036 ProtClustDB:PRK07207
RefSeq:YP_114078.1 ProteinModelPortal:Q607W9 GeneID:3104511
KEGG:mca:MCA1634 PATRIC:22607102 Uniprot:Q607W9
Length = 969
Score = 1231 (438.4 bits), Expect = 2.6e-125, P = 2.6e-125
Identities = 294/817 (35%), Positives = 437/817 (53%)
Query: 3 VIKRDGRKEPVRFDKITARLKKLSYGLSKEHCDPVLVAQKVCAGVYKGVTTTQLDELAAE 62
V DG ++P+ ++ +++ GLS +P + ++ ++ GV ++
Sbjct: 149 VTLEDGTRKPLDTARLRHVVEEACRGLSD--VEPAWIIEETRRNLFDGVPEKEVAPTLVM 206
Query: 63 TAAAMTVNHPDYALLAGRVAVSNLHK------------ITKNSFSETIKDMYNYYNKRSG 110
TA +Y+ +A R+ + L + T++ SE + + Y KR G
Sbjct: 207 TARTRIEQESNYSYVAARLLLDALRREALSFLGHGAVSATQDEMSERYGEYFKDYVKR-G 265
Query: 111 KKASLVADDVYEIIMKNAACLDGAIIXXXXXXXXXXXXKTLERSYLLKMDSRVVERPQHM 170
+ L++ ++ ++ L A+ +TL Y + E PQ
Sbjct: 266 VELELLSPELARFDLQR---LGEALKPERDLQFNYLGLQTLYDRYFIHSGDIRFELPQAF 322
Query: 171 LMRVSVGIHKDDTDS---ALKTYHLMSQHWFTHATPTLFNAGTPQPQLSSCFLLCMKDDS 227
MRV++G+ + D A++ Y L+S F +TPTLFNAGT +PQLSSC+L + DD
Sbjct: 323 FMRVAMGLAIQEVDREERAIEFYDLLSSFDFMSSTPTLFNAGTLRPQLSSCYLTTVPDD- 381
Query: 228 IEGIYDTLKKCAIISKSAGGIGLSIHNIRASGSYIHGTNGSSNGIVPMLQVFNDTARYVD 287
++GIY +K A++SK AGG+G +R G++I GTNG S G+VP L+V NDTA V+
Sbjct: 382 LDGIYSAIKDNALLSKFAGGLGNDWTRVRGMGAHIKGTNGKSQGVVPFLKVANDTAVAVN 441
Query: 288 QGGGKRKGAFAIYLEPWHADIFEFLDLRKNQGKEECRARDLFYALWVPDLFMERVRDDGK 347
QGG KRKGA YLE WH DI EFLDLRKN G + R D+ A WVPDLFM+RV ++ +
Sbjct: 442 QGG-KRKGAVCAYLETWHIDIEEFLDLRKNTGDDRRRTHDMNTANWVPDLFMKRVAEERE 500
Query: 348 WSLFCPSDASGLADSWGIEFEHLYSQYE---EEGRAKMV--ISARKLWFEILNSQIETGT 402
W+LF P+D L D G FE Y +YE + G K+ + A +LW ++L+ ETG
Sbjct: 501 WTLFSPNDTPDLHDLTGQSFERRYQEYEAKADRGEIKLYKRLPAVQLWRKMLSMLFETGH 560
Query: 403 PYMLFKDSCNRKSNQQNLGTIKSSNLCTEIVEFSSPEETAVCNLASIALPRYVREKGVPV 462
P++ FKD CN + Q+ G + SSNLCTEI ++ E AVCNL S+ L ++ G
Sbjct: 561 PWLAFKDPCNLRYTNQHAGVVHSSNLCTEITLHTNDNEIAVCNLGSVNLAAHITPDGA-- 618
Query: 463 QSNVSKLVGSRDSKNRLFDFERLAEVTKIITENLNKIIDVNHYPIETTRRSNLRHRPIGI 522
D E+L L+ +ID+N+Y + RRSNLRHRP+G+
Sbjct: 619 -----------------LDTEKLQRTIATGMRMLDNVIDINYYSVPQARRSNLRHRPVGL 661
Query: 523 GIQGLADTFILLGLPFESPEAQQLNKDIFETIYYHALKASAELAVKDGPYETYFGSPMSK 582
GI G D L LP+ S EA E + Y+A++AS +LA + G Y ++ GS S+
Sbjct: 662 GIMGFQDALYKLRLPYASQEAVAFADLSMEAVSYYAIQASCDLAAERGRYSSFDGSLWSR 721
Query: 583 GILQVDMWNITPSDRW-----------DWSSLREMISKNGVRNSLLVAPMPTASTSQILG 631
GIL +D + R DW++LRE + G+RNS +A PTA+ S I G
Sbjct: 722 GILPIDSIALLEEGRGGYLQMDRSQTLDWNALRERVRTVGMRNSNTMAIAPTATISNICG 781
Query: 632 NNECFEPYTSNIYTRRVLSGEFIVVNKHLLKDLTELGLWSHALKTKIIYENGSVSKISEI 691
++ EP N++ + LSGEF VVN +L++DL LGLW + + Y +GSV KI I
Sbjct: 782 VSQSIEPTYQNLFVKSNLSGEFTVVNPYLVRDLKTLGLWDAVMINDLKYYDGSVQKIERI 841
Query: 692 PEELKAIYKTVWEIKQKTLVDMAADRGCYIDQSQSLNIHMEQPDHGKLTSLHFYAWSKGM 751
PE LK +Y T +EI + L++ + R ++DQ+QSLN+++ +P KL +L+ AW +G+
Sbjct: 842 PETLKQLYATAFEIDARWLIEAGSRRQKWLDQAQSLNLYLAEPSGKKLDTLYKLAWVRGL 901
Query: 752 KTGMYYLRTRAAADAIKFTVDTSVLNNEKANRADNDV 788
KT YYLR+ A K T LN K + D+ +
Sbjct: 902 KT-TYYLRSLGATHVEKSTAFDGKLNAVKTDPIDDAI 937
>UNIPROTKB|Q5HXD4 [details] [associations]
symbol:nrdA "Ribonucleoside-diphosphate reductase"
species:195099 "Campylobacter jejuni RM1221" [GO:0004748
"ribonucleoside-diphosphate reductase activity, thioredoxin
disulfide as acceptor" evidence=ISS] [GO:0009265
"2'-deoxyribonucleotide biosynthetic process" evidence=ISS]
InterPro:IPR000788 InterPro:IPR008926 InterPro:IPR013346
InterPro:IPR013509 Pfam:PF00317 Pfam:PF02867 PRINTS:PR01183
PROSITE:PS00089 UniPathway:UPA00326 Pfam:PF03477 GO:GO:0005524
GO:GO:0006260 EMBL:CP000025 GenomeReviews:CP000025_GR
InterPro:IPR005144 PROSITE:PS51161 GO:GO:0009265 eggNOG:COG0209
KO:K00525 GO:GO:0005971 GO:GO:0004748 SUPFAM:SSF48168
TIGRFAMs:TIGR02506 RefSeq:YP_178051.1 ProteinModelPortal:Q5HXD4
STRING:Q5HXD4 GeneID:3230679 KEGG:cjr:CJE0024 PATRIC:20041737
HOGENOM:HOG000057034 OMA:RAHDLFP ProtClustDB:PRK08447
BioCyc:CJEJ195099:GJC0-23-MONOMER Uniprot:Q5HXD4
Length = 789
Score = 681 (244.8 bits), Expect = 5.1e-108, Sum P(4) = 5.1e-108
Identities = 165/445 (37%), Positives = 253/445 (56%)
Query: 1 MYVIKRDGRKEPVRFDKITARLKKLSYGLSKEHCDPVLVAQKVCAGVYKGVTTTQLDELA 60
M VIKR+GR E + KI L + + + K+ G++T ++ +
Sbjct: 1 MKVIKRNGRTEELDVSKIKKCTSDAVKDLEGVNLSELELDAKI--QFRDGISTEEIQKTL 58
Query: 61 AETAA-AMTVNHPDYALLAGRVAVSNLHKITKNSFSETIKDMYNYYNKRSGKKASLVADD 119
+TA + ++ P++ +A R+ + +L+K K + + Y+ K G+K +
Sbjct: 59 IKTAVDKIDIDCPNWTFVAARLFLFDLYK--KVNGMNRYNHLREYFEK--GEKEGRILLG 114
Query: 120 VYEIIMKNAACLDGAIIXXXXXXXXXXXXKTLERSYLLKMDSR--VVERPQHMLMRVSVG 177
+ E + L+ I KTL YL+K DS+ +E PQ M M +++
Sbjct: 115 LKE--KYDLDDLNAYIKPERDMQFTYLGIKTLYDRYLIK-DSKGMPIELPQQMFMAIAMF 171
Query: 178 IHKDDTDS---ALKTYHLMSQHWFTHATPTLFNAGTPQPQLSSCFLLCMKDDSIEGIYDT 234
+ +++ + A K Y L+S+ ATPTL NA T + QLSSC++ D+IEGI+D+
Sbjct: 172 LAQNEFNPQEWAKKFYDLISKFELMLATPTLSNARTTRHQLSSCYI-GSTPDNIEGIFDS 230
Query: 235 LKKCAIISKSAGGIGLSIHNIRASGSYIHGTNGSSNGIVPMLQVFNDTARYVDQGGGKRK 294
++ A++SK GGIG +RA G I G ++ GI+P L++ ND A VDQ G RK
Sbjct: 231 YQEMALLSKFGGGIGWDWSKVRAMGGSIDGHKNAAGGIIPFLKITNDIAVAVDQLG-TRK 289
Query: 295 GAFAIYLEPWHADIFEFLDLRKNQGKEECRARDLFYALWVPDLFMERVRDDGKWSLFCPS 354
GA A+Y+EPWH DI +F+DLRKN G+E RA +LF ALW+ DLFM+RVR + KW+LF P+
Sbjct: 290 GAIAVYIEPWHMDISDFIDLRKNSGEERRRAHELFPALWINDLFMKRVRANDKWTLFDPA 349
Query: 355 DASGLADSWGIEFEHLYSQYE-EEGRAKMVISARKLWFEILNSQIETGTPYMLFKDSCNR 413
D + L D +G FE Y +YE +E K ++ A++LW +IL + ETG P++ FKDS NR
Sbjct: 350 DTADLCDLYGEAFEKRYEEYEKDESITKEIVEAKELWKKILLNYFETGLPFLCFKDSANR 409
Query: 414 KSNQQNLGTIKSSNLCTEIVEFSSP 438
+ ++G I+SSNLCTEI + + P
Sbjct: 410 ANPNAHVGIIRSSNLCTEIFQNTEP 434
Score = 248 (92.4 bits), Expect = 5.1e-108, Sum P(4) = 5.1e-108
Identities = 69/222 (31%), Positives = 112/222 (50%)
Query: 477 NRLFDFERLAEVTKIITENLNKIIDVNHYPIETTRRSNLRHRPIGIGIQGLADTFILLGL 536
++++ E + V L+ +ID+N YP + +NL+ R IG+G+ G A +
Sbjct: 504 SKVYTKEDIERVVPTAIRMLDNVIDLNFYPHRKVKDTNLKSRAIGLGVMGEAQMLAEAKI 563
Query: 537 PFESPEAQQLNK--DIFETIYYHALKASAELAVKDGPYETYFGSPMSKGILQVDMWN--- 591
+ S E LNK +I E I + A+ AS+ LA++ G YE + GS SKGI +D+ +
Sbjct: 564 YWGSDE--HLNKIDEIMEQISFEAINASSNLALEKGSYEDFEGSNWSKGIFPIDVASPKA 621
Query: 592 --IT------PSDRWDWSSLREMISKNGVRNSLLVAPMPTASTSQILGNNECFEPYTSNI 643
+T DW LRE + K+G+RN L+A PT+S S ++G + EP
Sbjct: 622 KALTLREGLFDQSECDWVKLREKVKKDGMRNGYLMAIAPTSSISILVGTTQTIEPVYKRK 681
Query: 644 YTRRVLSGEFIVVNKHLLKDLTELGLWSHALKTKIIYENGSV 685
+ + LSG VV +L D + ++ L KI+ + +V
Sbjct: 682 WFEQNLSGMIPVVVPNLSLDTWQYYTPAYELDQKILVKAAAV 723
Score = 125 (49.1 bits), Expect = 5.1e-108, Sum P(4) = 5.1e-108
Identities = 33/80 (41%), Positives = 47/80 (58%)
Query: 699 YKTVWEIKQKTLVDMAADRGCYIDQSQSLNIHM--EQPDHGKLTSLHFYAWSKGMKTGMY 756
Y +E+ QK LV AA RG +IDQ QSLNI + ++ G L ++ AW G+K+ Y
Sbjct: 706 YTPAYELDQKILVKAAAVRGKWIDQGQSLNIFLSLDKASGGYLNEIYQLAWELGVKS-TY 764
Query: 757 YLRTRAAADAIKFTV-DTSV 775
YLR+ + D+ K V D S+
Sbjct: 765 YLRSESP-DSEKVNVADRSI 783
Score = 110 (43.8 bits), Expect = 1.9e-81, Sum P(3) = 1.9e-81
Identities = 38/126 (30%), Positives = 60/126 (47%)
Query: 599 DWSSLREMISKNGVRNSLLVAPMPTASTSQILGNNECFEPYTSNIYTRRVLSGEFIVVNK 658
DW LRE + K+G+RN L+A PT+S S ++G + EP + + LSG VV
Sbjct: 637 DWVKLREKVKKDGMRNGYLMAIAPTSSISILVGTTQTIEPVYKRKWFEQNLSGMIPVVVP 696
Query: 659 HLLKDLTELGLWSHALKTKIIYENGSV-SKISEIPEEL-------KA-------IYKTVW 703
+L D + ++ L KI+ + +V K + + L KA IY+ W
Sbjct: 697 NLSLDTWQYYTPAYELDQKILVKAAAVRGKWIDQGQSLNIFLSLDKASGGYLNEIYQLAW 756
Query: 704 EIKQKT 709
E+ K+
Sbjct: 757 ELGVKS 762
Score = 58 (25.5 bits), Expect = 5.1e-108, Sum P(4) = 5.1e-108
Identities = 15/28 (53%), Positives = 20/28 (71%)
Query: 432 IVE-FSSPEETAVCNLASIALPR-YVRE 457
IVE + + +TAVCNLASI L + Y +E
Sbjct: 483 IVEKYKNDGKTAVCNLASINLSKVYTKE 510
>TIGR_CMR|CJE_0024 [details] [associations]
symbol:CJE_0024 "ribonucleoside-diphosphate reductase,
alpha subunit" species:195099 "Campylobacter jejuni RM1221"
[GO:0004748 "ribonucleoside-diphosphate reductase activity,
thioredoxin disulfide as acceptor" evidence=ISS] [GO:0009265
"2'-deoxyribonucleotide biosynthetic process" evidence=ISS]
InterPro:IPR000788 InterPro:IPR008926 InterPro:IPR013346
InterPro:IPR013509 Pfam:PF00317 Pfam:PF02867 PRINTS:PR01183
PROSITE:PS00089 UniPathway:UPA00326 Pfam:PF03477 GO:GO:0005524
GO:GO:0006260 EMBL:CP000025 GenomeReviews:CP000025_GR
InterPro:IPR005144 PROSITE:PS51161 GO:GO:0009265 eggNOG:COG0209
KO:K00525 GO:GO:0005971 GO:GO:0004748 SUPFAM:SSF48168
TIGRFAMs:TIGR02506 RefSeq:YP_178051.1 ProteinModelPortal:Q5HXD4
STRING:Q5HXD4 GeneID:3230679 KEGG:cjr:CJE0024 PATRIC:20041737
HOGENOM:HOG000057034 OMA:RAHDLFP ProtClustDB:PRK08447
BioCyc:CJEJ195099:GJC0-23-MONOMER Uniprot:Q5HXD4
Length = 789
Score = 681 (244.8 bits), Expect = 5.1e-108, Sum P(4) = 5.1e-108
Identities = 165/445 (37%), Positives = 253/445 (56%)
Query: 1 MYVIKRDGRKEPVRFDKITARLKKLSYGLSKEHCDPVLVAQKVCAGVYKGVTTTQLDELA 60
M VIKR+GR E + KI L + + + K+ G++T ++ +
Sbjct: 1 MKVIKRNGRTEELDVSKIKKCTSDAVKDLEGVNLSELELDAKI--QFRDGISTEEIQKTL 58
Query: 61 AETAA-AMTVNHPDYALLAGRVAVSNLHKITKNSFSETIKDMYNYYNKRSGKKASLVADD 119
+TA + ++ P++ +A R+ + +L+K K + + Y+ K G+K +
Sbjct: 59 IKTAVDKIDIDCPNWTFVAARLFLFDLYK--KVNGMNRYNHLREYFEK--GEKEGRILLG 114
Query: 120 VYEIIMKNAACLDGAIIXXXXXXXXXXXXKTLERSYLLKMDSR--VVERPQHMLMRVSVG 177
+ E + L+ I KTL YL+K DS+ +E PQ M M +++
Sbjct: 115 LKE--KYDLDDLNAYIKPERDMQFTYLGIKTLYDRYLIK-DSKGMPIELPQQMFMAIAMF 171
Query: 178 IHKDDTDS---ALKTYHLMSQHWFTHATPTLFNAGTPQPQLSSCFLLCMKDDSIEGIYDT 234
+ +++ + A K Y L+S+ ATPTL NA T + QLSSC++ D+IEGI+D+
Sbjct: 172 LAQNEFNPQEWAKKFYDLISKFELMLATPTLSNARTTRHQLSSCYI-GSTPDNIEGIFDS 230
Query: 235 LKKCAIISKSAGGIGLSIHNIRASGSYIHGTNGSSNGIVPMLQVFNDTARYVDQGGGKRK 294
++ A++SK GGIG +RA G I G ++ GI+P L++ ND A VDQ G RK
Sbjct: 231 YQEMALLSKFGGGIGWDWSKVRAMGGSIDGHKNAAGGIIPFLKITNDIAVAVDQLG-TRK 289
Query: 295 GAFAIYLEPWHADIFEFLDLRKNQGKEECRARDLFYALWVPDLFMERVRDDGKWSLFCPS 354
GA A+Y+EPWH DI +F+DLRKN G+E RA +LF ALW+ DLFM+RVR + KW+LF P+
Sbjct: 290 GAIAVYIEPWHMDISDFIDLRKNSGEERRRAHELFPALWINDLFMKRVRANDKWTLFDPA 349
Query: 355 DASGLADSWGIEFEHLYSQYE-EEGRAKMVISARKLWFEILNSQIETGTPYMLFKDSCNR 413
D + L D +G FE Y +YE +E K ++ A++LW +IL + ETG P++ FKDS NR
Sbjct: 350 DTADLCDLYGEAFEKRYEEYEKDESITKEIVEAKELWKKILLNYFETGLPFLCFKDSANR 409
Query: 414 KSNQQNLGTIKSSNLCTEIVEFSSP 438
+ ++G I+SSNLCTEI + + P
Sbjct: 410 ANPNAHVGIIRSSNLCTEIFQNTEP 434
Score = 248 (92.4 bits), Expect = 5.1e-108, Sum P(4) = 5.1e-108
Identities = 69/222 (31%), Positives = 112/222 (50%)
Query: 477 NRLFDFERLAEVTKIITENLNKIIDVNHYPIETTRRSNLRHRPIGIGIQGLADTFILLGL 536
++++ E + V L+ +ID+N YP + +NL+ R IG+G+ G A +
Sbjct: 504 SKVYTKEDIERVVPTAIRMLDNVIDLNFYPHRKVKDTNLKSRAIGLGVMGEAQMLAEAKI 563
Query: 537 PFESPEAQQLNK--DIFETIYYHALKASAELAVKDGPYETYFGSPMSKGILQVDMWN--- 591
+ S E LNK +I E I + A+ AS+ LA++ G YE + GS SKGI +D+ +
Sbjct: 564 YWGSDE--HLNKIDEIMEQISFEAINASSNLALEKGSYEDFEGSNWSKGIFPIDVASPKA 621
Query: 592 --IT------PSDRWDWSSLREMISKNGVRNSLLVAPMPTASTSQILGNNECFEPYTSNI 643
+T DW LRE + K+G+RN L+A PT+S S ++G + EP
Sbjct: 622 KALTLREGLFDQSECDWVKLREKVKKDGMRNGYLMAIAPTSSISILVGTTQTIEPVYKRK 681
Query: 644 YTRRVLSGEFIVVNKHLLKDLTELGLWSHALKTKIIYENGSV 685
+ + LSG VV +L D + ++ L KI+ + +V
Sbjct: 682 WFEQNLSGMIPVVVPNLSLDTWQYYTPAYELDQKILVKAAAV 723
Score = 125 (49.1 bits), Expect = 5.1e-108, Sum P(4) = 5.1e-108
Identities = 33/80 (41%), Positives = 47/80 (58%)
Query: 699 YKTVWEIKQKTLVDMAADRGCYIDQSQSLNIHM--EQPDHGKLTSLHFYAWSKGMKTGMY 756
Y +E+ QK LV AA RG +IDQ QSLNI + ++ G L ++ AW G+K+ Y
Sbjct: 706 YTPAYELDQKILVKAAAVRGKWIDQGQSLNIFLSLDKASGGYLNEIYQLAWELGVKS-TY 764
Query: 757 YLRTRAAADAIKFTV-DTSV 775
YLR+ + D+ K V D S+
Sbjct: 765 YLRSESP-DSEKVNVADRSI 783
Score = 110 (43.8 bits), Expect = 1.9e-81, Sum P(3) = 1.9e-81
Identities = 38/126 (30%), Positives = 60/126 (47%)
Query: 599 DWSSLREMISKNGVRNSLLVAPMPTASTSQILGNNECFEPYTSNIYTRRVLSGEFIVVNK 658
DW LRE + K+G+RN L+A PT+S S ++G + EP + + LSG VV
Sbjct: 637 DWVKLREKVKKDGMRNGYLMAIAPTSSISILVGTTQTIEPVYKRKWFEQNLSGMIPVVVP 696
Query: 659 HLLKDLTELGLWSHALKTKIIYENGSV-SKISEIPEEL-------KA-------IYKTVW 703
+L D + ++ L KI+ + +V K + + L KA IY+ W
Sbjct: 697 NLSLDTWQYYTPAYELDQKILVKAAAVRGKWIDQGQSLNIFLSLDKASGGYLNEIYQLAW 756
Query: 704 EIKQKT 709
E+ K+
Sbjct: 757 ELGVKS 762
Score = 58 (25.5 bits), Expect = 5.1e-108, Sum P(4) = 5.1e-108
Identities = 15/28 (53%), Positives = 20/28 (71%)
Query: 432 IVE-FSSPEETAVCNLASIALPR-YVRE 457
IVE + + +TAVCNLASI L + Y +E
Sbjct: 483 IVEKYKNDGKTAVCNLASINLSKVYTKE 510
>UNIPROTKB|Q71XL1 [details] [associations]
symbol:nrdA "Ribonucleoside-diphosphate reductase"
species:265669 "Listeria monocytogenes serotype 4b str. F2365"
[GO:0004748 "ribonucleoside-diphosphate reductase activity,
thioredoxin disulfide as acceptor" evidence=ISS] [GO:0005971
"ribonucleoside-diphosphate reductase complex" evidence=ISS]
[GO:0009265 "2'-deoxyribonucleotide biosynthetic process"
evidence=ISS] InterPro:IPR000788 InterPro:IPR008926
InterPro:IPR013346 InterPro:IPR013509 Pfam:PF00317 Pfam:PF02867
PRINTS:PR01183 PROSITE:PS00089 UniPathway:UPA00326 GO:GO:0005524
GO:GO:0006260 EMBL:AE017262 GenomeReviews:AE017262_GR
InterPro:IPR005144 PROSITE:PS51161 GO:GO:0009265 eggNOG:COG0209
KO:K00525 GO:GO:0005971 GO:GO:0004748 SUPFAM:SSF48168
TIGRFAMs:TIGR02506 HOGENOM:HOG000057034 RefSeq:YP_014777.1
ProteinModelPortal:Q71XL1 STRING:Q71XL1 GeneID:2798407
KEGG:lmf:LMOf2365_2187 PATRIC:20325695 OMA:RTHDLFT
ProtClustDB:PRK09209 Uniprot:Q71XL1
Length = 763
Score = 721 (258.9 bits), Expect = 2.2e-78, Sum P(2) = 2.2e-78
Identities = 215/673 (31%), Positives = 341/673 (50%)
Query: 2 YVIKRDGRKEPVRFDK--ITARLKKLSYGLSKEHCDPVLVAQKVCAGVYK--GVTTTQL- 56
Y++K DG + FDK + L+K+ K + +KV V K +L
Sbjct: 10 YIVK-DGGNRKLPFDKSRLDGYLEKIHEEFPKLDLEDY--KRKVFNFVEKKEDYAADELV 66
Query: 57 DELAAETAAAMTVNHPDYALLAGRVAVSNLHK-ITKNSFSETIKDMYNYYNKRSGKKASL 115
D L E A ++ P++ A R+ ++ L+K +KN F D Y Y G + SL
Sbjct: 67 DYLIREAEARTDIHIPEWEHFAARLYLNKLYKKASKNRFYND-DDKYGSY---VGLQESL 122
Query: 116 VADDVYE-IIMKNAACLD----GAIIXXXXXXXXXXXXKTLERSYLLKMDSR--VVERPQ 168
+Y I+KN + D G +I L + L DS V E PQ
Sbjct: 123 GERGIYSGNILKNYSKEDLIAAGKLIDPEKDKLFTYNGLYLLATRYLATDSERNVYELPQ 182
Query: 169 HMLMRVSVGIHKDDT-DSALK----TYHLMSQHWFTHATPTLFNAGTPQPQLSSCFLLCM 223
+ +++ + +++ + +K Y +S + T ATPTL NAG QLSSCF+ +
Sbjct: 183 ERWLTIALYLMQNEPKEKRMKLVEEAYWALSNLYMTVATPTLANAGKVGGQLSSCFIDTV 242
Query: 224 KDDSIEGIYDTLKKCAIISKSAGGIGLSIHNIRASGSYIHGTNGSSNGIVPMLQVFNDTA 283
DDS++GIYD+ A +SK GG+G + +R++G+ I G G+S G++P ++ N+TA
Sbjct: 243 -DDSLQGIYDSNTDVARVSKHGGGVGAYLGYVRSTGAAIRGVKGASGGVIPWIKQLNNTA 301
Query: 284 RYVDQGGGKRKGAFAIYLEPWHADIFEFLDLRKNQGKEECRARDLFYALWVPDLFMERVR 343
VDQ G +RKGA A+YL+ +H DI FLDLR N G + RA D+F A+ +PD+FME V
Sbjct: 302 VSVDQLG-QRKGAIAVYLDVFHKDIESFLDLRLNNGDQRLRAHDVFTAVCIPDIFMEAVE 360
Query: 344 DDGKWSLFCPSDASGLADSWGIE-F------EHLYSQ-YEE----EGRAKMVISARKLWF 391
G+W LF P + W ++ F E + + YEE E +K ++ A +
Sbjct: 361 RRGEWYLFDPHEVKA-KKGWYLQDFYDESKGEGTFREKYEELVADETISKKIVKAIDIMK 419
Query: 392 EILNSQIETGTPYMLFKDSCNRKSNQQNLGTIKSSNLCTEIVEFSSPEETAVCNLASIAL 451
I+ SQ+ETG P+M ++D NR + ++ G + SSNLCTEI++ SP + + + S
Sbjct: 420 RIMMSQLETGNPFMFYRDEVNRMNPNKHEGMVYSSNLCTEIMQNMSPTKM-IQEIISGDQ 478
Query: 452 PRYVREKGVPVQSNVSKLVGSRDSKNRLFDFERLAEVTKIITENLNKIIDVNHYPIETTR 511
++ G V N+S + R ERL EV + +N +ID+N P+
Sbjct: 479 IVITKQAGDFVVCNLSSVNLGRAVVAEEGTLERLIEVEVRMLDN---VIDLNELPVPQAT 535
Query: 512 RSNLRHRPIGIGIQGLADTFILLGLPFESPEAQQLNKDIFETIYYHALKASAELAVKDGP 571
+N ++R IG+G G L + ++S EA++ +++E I Y A++AS +LA + G
Sbjct: 536 ITNQKYRSIGLGTFGWHHLLALKNIAWDSEEAEKYADELYEQINYLAIRASNKLAQEKGA 595
Query: 572 YETYFGSPMSKGILQVDMWNITPSDRWDWSSLREMISKNGVRNSLLVAPMPTASTSQILG 631
Y+ + GS + G +P +W L + +++ G+RN+ LVA P ST+QI G
Sbjct: 596 YKVFKGSDWNTGEYFARRNYNSP----EWQELAKEVAEKGLRNAYLVAVAPNMSTAQIAG 651
Query: 632 NNECFEPYTSNIY 644
+ +P S Y
Sbjct: 652 STASIDPIYSAFY 664
Score = 86 (35.3 bits), Expect = 2.2e-78, Sum P(2) = 2.2e-78
Identities = 21/62 (33%), Positives = 33/62 (53%)
Query: 700 KTVWEIKQKTLVDMAADRGCYIDQSQSLNIHMEQP-DHGKLTSLHFYAWSKGMKTGMYYL 758
K +++ Q V R ++DQS S N ++ KL LH AW++G+KT YY+
Sbjct: 690 KGAYKVDQFASVRQNGRRQRHVDQSLSFNFYVPSGIKASKLLELHMTAWNEGLKT-TYYV 748
Query: 759 RT 760
R+
Sbjct: 749 RS 750
>TIGR_CMR|NSE_0411 [details] [associations]
symbol:NSE_0411 "ribonucleoside-diphosphate reductase,
alpha subunit" species:222891 "Neorickettsia sennetsu str.
Miyayama" [GO:0004748 "ribonucleoside-diphosphate reductase
activity, thioredoxin disulfide as acceptor" evidence=ISS]
[GO:0009265 "2'-deoxyribonucleotide biosynthetic process"
evidence=ISS] InterPro:IPR000788 InterPro:IPR008926
InterPro:IPR013509 Pfam:PF00317 Pfam:PF02867 PRINTS:PR01183
UniPathway:UPA00326 GO:GO:0005524 GO:GO:0006260 EMBL:CP000237
GenomeReviews:CP000237_GR eggNOG:COG0209 KO:K00525 GO:GO:0005971
GO:GO:0004748 SUPFAM:SSF48168 RefSeq:YP_506298.1 STRING:Q2GDZ8
GeneID:3932191 KEGG:nse:NSE_0411 PATRIC:22680881
HOGENOM:HOG000064500 OMA:EWDLISP ProtClustDB:PRK09102
BioCyc:NSEN222891:GHFU-434-MONOMER Uniprot:Q2GDZ8
Length = 605
Score = 287 (106.1 bits), Expect = 4.0e-61, Sum P(3) = 4.0e-61
Identities = 61/155 (39%), Positives = 95/155 (61%)
Query: 618 VAPMPTASTSQILGNNEC-FEPYTSNIYTRRVLSGEFIVVNKHLLKDLTELGLWSHALKT 676
+A PTAS S I GN EPY +N++T++ LSG F+V NKHL L G + + +
Sbjct: 429 IAVAPTASISIIAGNTSPGIEPYAANVFTQKTLSGSFVVKNKHLAALLERKGKNTDCVWS 488
Query: 677 KIIYENGSVSKISEIPEELKAIYKTVWEIKQKTLVDMAADRGCYIDQSQSLNIHMEQPDH 736
II GSV + + E K +++T +E+ Q+ ++++AADR YI QSQS+N+ + H
Sbjct: 489 SIISNEGSVQHLDFLDENEKMVFRTAYEMDQRWVIELAADRTPYICQSQSVNLFLHSNIH 548
Query: 737 GK-LTSLHFYAWSKGMKTGMYYLRTRAAADAIKFT 770
K L++LHF W KG+K+ +YY R+++ A K +
Sbjct: 549 KKELSNLHFLGWKKGLKS-LYYCRSKSIQRAYKIS 582
Score = 279 (103.3 bits), Expect = 4.0e-61, Sum P(3) = 4.0e-61
Identities = 70/194 (36%), Positives = 104/194 (53%)
Query: 168 QHMLMRVSVGIHKDDTDSALKTYHLMSQHWFTHATPTLFNAGTPQPQLSSCFLLCMKDDS 227
Q + RV+ + DD A + Y MS WF ATP L N GT + SCFL +DS
Sbjct: 47 QGLFARVAK-YYSDDPKHACRLYDYMSNLWFMPATPILSNGGTSRGLPVSCFLN-ETEDS 104
Query: 228 IEGIYDTLKKCAIISKSAGGIGLSIHNIRASGSYIHGTNGSSNGIVPMLQVFNDTARYVD 287
+EGI + ++ GG+G N+R+ G + +G ++GI+P + V N +
Sbjct: 105 LEGIVGLWNENVWLASHGGGVGSYWGNLRSIGEKVK-CSGKTSGIIPFIVVQNALTLAIS 163
Query: 288 QGGGKRKGAFAIYLEPWHADIFEFLDLRKNQGKEECR-ARDLFYALWVPDLFMERVRDDG 346
QG R+G+ A+YL H +I EF+DLRK G + R A +L +A+ + D FM+ V +D
Sbjct: 164 QGS-LRRGSSAVYLPVNHPEIIEFIDLRKPTGGDPNRKALNLHHAVVINDDFMKAVLEDK 222
Query: 347 KWSLFCPSDASGLA 360
+W L P D S +A
Sbjct: 223 EWDLISPKDGSVIA 236
Score = 186 (70.5 bits), Expect = 4.0e-61, Sum P(3) = 4.0e-61
Identities = 61/199 (30%), Positives = 94/199 (47%)
Query: 376 EEGRAKMVISARKLWFEILNSQIETGTPYMLFKDSCNRKSNQ--QNLGT-IKSSNLCTEI 432
++G + AR +W IL +++ETG PY+LF D+ R +NL +K SNLC+EI
Sbjct: 230 KDGSVIATVGARGIWIRILTARLETGEPYILFIDTVQRLRPDVYKNLNLDVKMSNLCSEI 289
Query: 433 VEFSSPEETAVCNLASIALPRYVREKGVPVQSNVSKLVGSRDSKNRLFDFERLAEVTKII 492
+ + A L EK + N + V RD + F + ++
Sbjct: 290 TLTTGKDHLDNHRTAICCLSSLNLEKFDEWEHN-EQFV--RD----VMHF-----LDNVL 337
Query: 493 TENLNKIIDVNHYPIETTRRSNLRHRPIGIGIQGLADTFILLGLPFESPEAQQLNKDIFE 552
+ + K D H R S +R R IG+G+ G G+PFES A+ +N IF+
Sbjct: 338 EDFIRKAPDCMH----RARYSAMRERSIGLGVMGFHSFLQSKGIPFESAIAKSVNLKIFK 393
Query: 553 TIYYHALKASAELAVKDGP 571
I + A K S E+A++ GP
Sbjct: 394 KIKHEADKISKEMALERGP 412
>TIGR_CMR|ECH_0459 [details] [associations]
symbol:ECH_0459 "ribonucleoside-diphosphate reductase,
alpha subunit" species:205920 "Ehrlichia chaffeensis str. Arkansas"
[GO:0004748 "ribonucleoside-diphosphate reductase activity,
thioredoxin disulfide as acceptor" evidence=ISS] [GO:0009265
"2'-deoxyribonucleotide biosynthetic process" evidence=ISS]
InterPro:IPR000788 InterPro:IPR008926 InterPro:IPR013346
InterPro:IPR013509 Pfam:PF00317 Pfam:PF02867 PRINTS:PR01183
UniPathway:UPA00326 GO:GO:0005524 EMBL:CP000236
GenomeReviews:CP000236_GR GO:GO:0006260 eggNOG:COG0209 KO:K00525
GO:GO:0005971 GO:GO:0004748 SUPFAM:SSF48168 TIGRFAMs:TIGR02506
HOGENOM:HOG000064500 ProtClustDB:PRK09102 RefSeq:YP_507276.1
STRING:Q2GH07 GeneID:3927177 KEGG:ech:ECH_0459 PATRIC:20576390
OMA:GALEKSI BioCyc:ECHA205920:GJNR-460-MONOMER Uniprot:Q2GH07
Length = 595
Score = 291 (107.5 bits), Expect = 3.4e-58, Sum P(3) = 3.4e-58
Identities = 70/193 (36%), Positives = 106/193 (54%)
Query: 168 QHMLMRVSVGIHKDDTDSALKTYHLMSQHWFTHATPTLFNAGTPQPQLSSCFLLCMKDDS 227
Q + +R+S + D+ + A + Y MSQ WF ATP L N GT + SCFL +DS
Sbjct: 34 QQLFVRISE-YYSDNPEHAQRLYDYMSQLWFMPATPILSNGGTNRGLPVSCFLN-ETEDS 91
Query: 228 IEGIYDTLKKCAIISKSAGGIGLSIHNIRASGSYIHGTNGSSNGIVPMLQVFNDTARYVD 287
+ GI + + ++ GGIG N+R+ G + G+ G ++GI+P + V N +
Sbjct: 92 LRGIVNLWNENVWLASKGGGIGSYWGNLRSIGEKVRGS-GKTSGIIPFIVVQNALTLAIS 150
Query: 288 QGGGKRKGAFAIYLEPWHADIFEFLDLRKNQGKEECR-ARDLFYALWVPDLFMERVRDDG 346
QG R+G+ A+YL WH +I EFLDLRK G + R A ++ + + + + FM+ V +D
Sbjct: 151 QGS-LRRGSSAVYLPVWHPEIEEFLDLRKPTGGDPNRKALNIHHGVVLSNKFMKCVENDE 209
Query: 347 KWSLFCPSDASGL 359
W L P D S L
Sbjct: 210 PWDLISPKDQSVL 222
Score = 260 (96.6 bits), Expect = 3.4e-58, Sum P(3) = 3.4e-58
Identities = 62/157 (39%), Positives = 92/157 (58%)
Query: 614 NSLLVAPMPTASTSQILGNNEC-FEPYTSNIYTRRVLSGEFIVVNKHLLKDLTELGLWSH 672
N L +AP TAS S I GN EPY +N++T + L+G FIV NK L K L G +
Sbjct: 414 NKLSIAP--TASISIIAGNTSPGIEPYAANVFTHKTLTGSFIVRNKFLQKLLKLKGKDNE 471
Query: 673 ALKTKIIYENGSVSKISEIPEELKAIYKTVWEIKQKTLVDMAADRGCYIDQSQSLNIHME 732
+ + I GSV + + EE K I+KT +E+ Q+ +++ +DR YI Q+QS+NI +
Sbjct: 472 QVWSSISTNEGSVQHLDFLTEEEKLIFKTAYELDQRWIIEHTSDRSKYICQAQSVNIFLP 531
Query: 733 QPDHGK-LTSLHFYAWSKGMKTGMYYLRTRAAADAIK 768
H + L +HF AW KG+K+ +YY R+++ A K
Sbjct: 532 ANVHKRYLHKIHFLAWRKGLKS-LYYCRSKSIQRADK 567
Score = 172 (65.6 bits), Expect = 3.4e-58, Sum P(3) = 3.4e-58
Identities = 59/190 (31%), Positives = 85/190 (44%)
Query: 384 ISARKLWFEILNSQIETGTPYMLFKDSC--NRKSNQQNLGT-IKSSNLCTEIVEFSSPEE 440
I AR +W +IL +++ETG PY+LF D N+ + L IK SNLCTEI + +
Sbjct: 225 IKARDIWIKILTTRVETGEPYILFIDQVDNNKPEIYKRLNLDIKMSNLCTEITLTTGYDH 284
Query: 441 TAVCNLASIALPRYVREKGVPVQSNVSKLVGSRDSKNRLFDFERLAEVTKIITENLNKII 500
A L N+ +D N LF + +V + + L I
Sbjct: 285 LNKSRTAICCL----------ASLNLEYYEQWKD--NSLF----IEDVMRFLDNVLTDFI 328
Query: 501 DVNHYPIETTRRSNLRHRPIGIGIQGLADTFILLGLPFESPEAQQLNKDIFETIYYHALK 560
+ +E + S +R R IG+G+ G +PFES A NK IF I HA
Sbjct: 329 EKAPSEMERAKYSAMRERSIGVGVMGFHSFLQSKMIPFESVAATIWNKKIFSHIRKHADA 388
Query: 561 ASAELAVKDG 570
AS +A++ G
Sbjct: 389 ASYNIAMEKG 398
Score = 38 (18.4 bits), Expect = 5.8e-18, Sum P(2) = 5.8e-18
Identities = 13/53 (24%), Positives = 19/53 (35%)
Query: 81 VAVSNLHKITKNSFSETIKDMYNYYNKRSGKKASLVADDV-YEIIMKNAACLD 132
V V H ++ +NK+ AD Y I M+ +CLD
Sbjct: 350 VGVMGFHSFLQSKMIPFESVAATIWNKKIFSHIRKHADAASYNIAMEKGSCLD 402
>TIGR_CMR|APH_0331 [details] [associations]
symbol:APH_0331 "ribonucleoside-diphosphate reductase,
alpha subunit" species:212042 "Anaplasma phagocytophilum HZ"
[GO:0004748 "ribonucleoside-diphosphate reductase activity,
thioredoxin disulfide as acceptor" evidence=ISS] [GO:0005971
"ribonucleoside-diphosphate reductase complex" evidence=ISS]
[GO:0009265 "2'-deoxyribonucleotide biosynthetic process"
evidence=ISS] InterPro:IPR000788 InterPro:IPR008926
InterPro:IPR013509 Pfam:PF00317 Pfam:PF02867 PRINTS:PR01183
UniPathway:UPA00326 GO:GO:0005524 GO:GO:0006260 EMBL:CP000235
GenomeReviews:CP000235_GR eggNOG:COG0209 KO:K00525 GO:GO:0005971
GO:GO:0004748 SUPFAM:SSF48168 HOGENOM:HOG000064500
ProtClustDB:PRK09102 RefSeq:YP_504939.1 ProteinModelPortal:Q2GL12
STRING:Q2GL12 GeneID:3931250 KEGG:aph:APH_0331 PATRIC:20949246
OMA:CEIIEYS BioCyc:APHA212042:GHPM-360-MONOMER Uniprot:Q2GL12
Length = 603
Score = 290 (107.1 bits), Expect = 7.7e-56, Sum P(3) = 7.7e-56
Identities = 69/198 (34%), Positives = 106/198 (53%)
Query: 160 DSRVVERPQHMLMRVSVG-IHKDDTDSALKTYHLMSQHWFTHATPTLFNAGTPQPQLSSC 218
D ++E+ + + V V + DD+ A + Y MS+ WF ATP L N GT + SC
Sbjct: 31 DRYLLEKEDYQQLFVRVAQYYSDDSQHAQRLYDYMSKLWFMPATPILSNGGTSRGLPISC 90
Query: 219 FLLCMKDDSIEGIYDTLKKCAIISKSAGGIGLSIHNIRASGSYIHGTNGSSNGIVPMLQV 278
FL +DS+ GI + + ++ GGIG N+R+ G + G+ G ++GI+P + V
Sbjct: 91 FLN-ETEDSLAGILNLWNENVWLASRGGGIGSYWGNLRSIGERVRGS-GKTSGIIPFIVV 148
Query: 279 FNDTARYVDQGGGKRKGAFAIYLEPWHADIFEFLDLRKNQGKEECR-ARDLFYALWVPDL 337
N + QG R+G+ A+YL WH +I EFLD+R+ G + R A ++ + + + D
Sbjct: 149 QNALTLAISQGS-LRRGSSAVYLPVWHPEIEEFLDIRRPTGGDPNRKALNIHHGVLLSDE 207
Query: 338 FMERVRDDGKWSLFCPSD 355
FME V D W L P D
Sbjct: 208 FMEAVEHDKTWDLLSPKD 225
Score = 246 (91.7 bits), Expect = 7.7e-56, Sum P(3) = 7.7e-56
Identities = 56/155 (36%), Positives = 90/155 (58%)
Query: 622 PTASTSQILGNNEC-FEPYTSNIYTRRVLSGEFIVVNKHLLKDLTELGLWSHALKTKIIY 680
PTAS S I GN EPY +N++T + L+G FIV NK L + L G + + I
Sbjct: 427 PTASISIIAGNTSPGIEPYAANVFTHKTLTGSFIVRNKFLQELLKSKGKDDDQVWSSIST 486
Query: 681 ENGSVSKISEIPEELKAIYKTVWEIKQKTLVDMAADRGCYIDQSQSLNIHMEQPDHGK-L 739
GSV + + + K ++KT +E+ Q+ +++ + DR YI Q+QS+NI + H + L
Sbjct: 487 NEGSVQHLDFLTDHEKLVFKTAYELDQRWVIEHSGDRTPYICQAQSVNIFLPAGVHKRYL 546
Query: 740 TSLHFYAWSKGMKTGMYYLRTRAA--ADAIKFTVD 772
+HF AW KG+K+ +YY+R+++ AD + V+
Sbjct: 547 HKVHFLAWKKGLKS-LYYMRSKSVQRADKVSHEVN 580
Score = 165 (63.1 bits), Expect = 7.7e-56, Sum P(3) = 7.7e-56
Identities = 56/190 (29%), Positives = 85/190 (44%)
Query: 384 ISARKLWFEILNSQIETGTPYMLFKDSCNRKSNQ--QNLGT-IKSSNLCTEIVEFSSPEE 440
+ AR LW +IL +++ETG PY++F D+ NR + + LG +K SNLCTEI + +
Sbjct: 232 VKARDLWIKILTTRVETGEPYIIFVDAVNRCKPEIYKKLGLDVKMSNLCTEITLTTGEDH 291
Query: 441 TAVCNLASIALPRYVREKGVPVQSNVSKLVGSRDSKNRLFDFERLAEVTKIITENLNKII 500
A L S+++ N F + +V + + L +
Sbjct: 292 LKKSRTAVCCL------------SSLNLEYYDMWCGNPQF----IEDVMRFLDNVLTDFV 335
Query: 501 DVNHYPIETTRRSNLRHRPIGIGIQGLADTFILLGLPFESPEAQQLNKDIFETIYYHALK 560
+E R S +R R IGIG+ G +PFES A NK IF + A
Sbjct: 336 QKAPTELERARYSAMRERSIGIGVMGFHSFLQSKMVPFESFAATMWNKKIFSYLKSQADA 395
Query: 561 ASAELAVKDG 570
S +LA++ G
Sbjct: 396 VSRKLALEKG 405
>TIGR_CMR|CPS_2328 [details] [associations]
symbol:CPS_2328 "ribonucleoside-diphosphate reductase,
alpha subunit" species:167879 "Colwellia psychrerythraea 34H"
[GO:0004748 "ribonucleoside-diphosphate reductase activity,
thioredoxin disulfide as acceptor" evidence=ISS] [GO:0009265
"2'-deoxyribonucleotide biosynthetic process" evidence=ISS]
InterPro:IPR000788 InterPro:IPR008926 InterPro:IPR013346
InterPro:IPR013509 Pfam:PF00317 Pfam:PF02867 PRINTS:PR01183
PROSITE:PS00089 UniPathway:UPA00326 Pfam:PF03477 GO:GO:0005524
GO:GO:0006260 EMBL:CP000083 GenomeReviews:CP000083_GR
InterPro:IPR005144 PROSITE:PS51161 eggNOG:COG0209 KO:K00525
GO:GO:0005971 GO:GO:0004748 SUPFAM:SSF48168 TIGRFAMs:TIGR02506
OMA:YKYGVKT HOGENOM:HOG000278076 ProtClustDB:PRK09103
RefSeq:YP_269048.1 ProteinModelPortal:Q482G9 SMR:Q482G9
STRING:Q482G9 GeneID:3522540 KEGG:cps:CPS_2328 PATRIC:21467749
BioCyc:CPSY167879:GI48-2393-MONOMER Uniprot:Q482G9
Length = 756
Score = 549 (198.3 bits), Expect = 1.8e-55, Sum P(2) = 1.8e-55
Identities = 195/695 (28%), Positives = 302/695 (43%)
Query: 1 MYVIKRDGRKEPVRFDKITARLKKLSYGLSKEHCDPVLVAQKVCAGVYKGVTTTQLDELA 60
++V KR+G KE + +KI + + GL + V + + Y G+ T + E
Sbjct: 5 LFVTKRNGEKETIDLEKIHRVIAWAADGLEQVSVSQVELKSHI--QFYDGIKTEDIHETI 62
Query: 61 AETAAAMTVNH-PDYALLAGRVAVSNLHKITKNSFSETIKDMYNYYNK--RSGK-KASLV 116
++AA + PDY LA R+AV +L K F +Y++ K +GK L+
Sbjct: 63 IKSAADLISEETPDYQYLAARLAVFHLRKKAYGQFEPPA--LYDHVVKLVEAGKYDQHLL 120
Query: 117 ADDVYEIIMKNAACLDGAIIXXXXXXXXXXXXKTLERSYLL--KMDSRVVERPQHMLMRV 174
AD + ++ +D + K LE YL+ ++ + E Q + + V
Sbjct: 121 ADYTKDDFEHMSSFMDHS----RDLNFSYAAMKQLEGKYLVQNRVSGEIYESAQFLYILV 176
Query: 175 SVGIH-KDDTDSALKT----YHLMSQHWFTHATPTLFNAGTPQPQLSSCFLL-CMKDDSI 228
S + K +S L+ YH +S+ + TP + TP Q SSC L+ C DS+
Sbjct: 177 SACLFAKYPVESRLRYVEDFYHAISRFKISLPTPIMAGVRTPTRQFSSCVLIEC--GDSL 234
Query: 229 EGIYDTLKKCAIISKSAGGIGLSIHNIRASGSYIHGTNGSSNGIVPMLQVFNDTARYVDQ 288
+ I T GIG++ IRA GS I G +P + F + Q
Sbjct: 235 DSINATSSAIVKYVSQRAGIGVNAGRIRALGSTIRNGEAFHTGCIPFFKHFQTAVKSCSQ 294
Query: 289 GGGKRKGAFAIYLEPWHADIFEFLDLRKNQGKEECRARDLFYALWVPDLFMERVRDDGKW 348
GG R GA ++ WH ++ L L+ N+G EE R R L Y + L +R+ G
Sbjct: 295 GG-VRGGAATLFYPLWHLEVESLLVLKNNRGVEENRVRHLDYGVQFNKLMYQRLIKGGSI 353
Query: 349 SLFCPSDASGLADSWGIE---FEHLYSQYE-EEGRAKMVISARKLWFEILNSQIETGTPY 404
+LF PSD GL D++ + FE LY QYE ++ K I A +L+ + TG Y
Sbjct: 354 TLFSPSDVPGLYDAFFEDQEKFERLYVQYENDDSIRKKRIKAIELFTLFAQERASTGRIY 413
Query: 405 MLFKDSCNRKSNQQNLGTIKSSNLCTEIVEFSSPEETAVCNLASIALPRYVREKGVPVQS 464
+ D CN S SS ++ ++ +C IALP
Sbjct: 414 LQNVDHCNTHS------PFDSSK--------AAIRQSNLC--LEIALPTKPMNDINDENG 457
Query: 465 NVSKLVGSRDSKNRLFDFERLAEVTKIITENLNKIIDVNHYPIETTRRSNLRHRPIGIGI 524
++ S + + + L + + L+ ++D YPI + +++ R +GIG+
Sbjct: 458 EIALCTLSAFNLGAIDSLDELEGLADLAVRALDSLLDYQDYPIAAAQSASMARRTLGIGV 517
Query: 525 QGLADTFILLGLPFESPEAQQLNKDIFETIYYHALKASAELAVKDGPYETYFGSPMSKGI 584
A GL + + A L FE I ++ LKA+ ELA + G + + +SKGI
Sbjct: 518 INYAYYLAKNGLYYSNGSANNLTHRTFEAIQFYLLKATNELAKEQGACPKFDETLLSKGI 577
Query: 585 LQVDMWNITPSD------RWDWSSLREMISKNGVRNSLLVAPMPTASTSQILGNNECFEP 638
L +D + T D DW SLRE I K+GVRNS + A MP+ ++SQI EP
Sbjct: 578 LPIDTYKKTIDDITGEPLHLDWESLRESIKKHGVRNSTVSALMPSETSSQISNATNGIEP 637
Query: 639 YTSNIYTRRVLSGEF--IVVNKHLLKDLTELGLWS 671
I + G +V LK EL LW+
Sbjct: 638 PRGLISIKASKDGVLKQVVPEYEKLKGNYEL-LWN 671
Score = 64 (27.6 bits), Expect = 1.8e-55, Sum P(2) = 1.8e-55
Identities = 25/102 (24%), Positives = 49/102 (48%)
Query: 681 ENGSVSKISEIPEELKAIYKTVWEIKQKT-LVDMAADRGCYIDQSQSLNIHMEQP--DHG 737
++G + ++ E+LK Y+ +W I +++ ++DQ+ S N + + + G
Sbjct: 648 KDGVLKQVVPEYEKLKGNYELLWNIPDNQGYLELVGIMQKFVDQAISANTNYDPNKFEGG 707
Query: 738 KLTSLHFY-----AWSKGMKTGMYYLRTR-AAADAIKFTVDT 773
K+ A+ G+KT +YY TR A+D I+ D+
Sbjct: 708 KVPVKQILKDILTAYKLGVKT-LYYHNTRDGASDDIEIEDDS 748
>UNIPROTKB|Q9KSK0 [details] [associations]
symbol:VC1256 "Ribonucleoside-diphosphate reductase"
species:243277 "Vibrio cholerae O1 biovar El Tor str. N16961"
[GO:0004748 "ribonucleoside-diphosphate reductase activity,
thioredoxin disulfide as acceptor" evidence=ISS] [GO:0009265
"2'-deoxyribonucleotide biosynthetic process" evidence=ISS]
InterPro:IPR000788 InterPro:IPR008926 InterPro:IPR013346
InterPro:IPR013509 Pfam:PF00317 Pfam:PF02867 PRINTS:PR01183
PROSITE:PS00089 UniPathway:UPA00326 Pfam:PF03477 GO:GO:0005524
GO:GO:0006260 GenomeReviews:AE003852_GR InterPro:IPR005144
PROSITE:PS51161 GO:GO:0009265 KO:K00525 GO:GO:0005971 GO:GO:0004748
SUPFAM:SSF48168 TIGRFAMs:TIGR02506 OMA:YKYGVKT ProtClustDB:PRK09103
HSSP:P00452 EMBL:AE004204 PIR:E82223 RefSeq:NP_230901.1
ProteinModelPortal:Q9KSK0 SMR:Q9KSK0 DNASU:2614693 GeneID:2614693
KEGG:vch:VC1256 PATRIC:20081592 Uniprot:Q9KSK0
Length = 761
Score = 547 (197.6 bits), Expect = 2.6e-51, P = 2.6e-51
Identities = 186/691 (26%), Positives = 303/691 (43%)
Query: 3 VIKRDGRKEPVRFDKITARLKKLSYGLSKEHCDPVLVAQKVCAGVYKGVTTTQLDELAAE 62
V KRDGRKE + DKI + + GL V + + Y G+TT+ + E +
Sbjct: 7 VTKRDGRKENIDLDKIHRVITWAAEGLQNVSVSQVELRAHI--QFYDGITTSDIHETIIK 64
Query: 63 TAAAMTVNH-PDYALLAGRVAVSNLHKITKNSFSETIKDMYNYYNKRSGKKASLVADDVY 121
+AA + PDY LA R+AV +L K + + GK + +D Y
Sbjct: 65 SAADLISEETPDYQYLAARLAVFHLRKKAYGQYEPPTLLAHVTKMVEKGKYDKHLLED-Y 123
Query: 122 EIIMKNAACLDGAIIXXXXXXXXXXXXKTLERSYLL--KMDSRVVERPQHMLMRVSVGI- 178
+ +D I K LE Y + ++ ++ E Q + + V+ +
Sbjct: 124 T--REELELMDQFIDHRRDLDFSYAAVKQLEGKYFVQNRVTGQIYESAQFLYILVAACLF 181
Query: 179 --HKDDT--DSALKTYHLMSQHWFTHATPTLFNAGTPQPQLSSCFLL-CMKDDSIEGIYD 233
+ +T D + Y S + TP + TP Q SSC L+ C DS++ I
Sbjct: 182 AKYPKETRLDYIKRFYDATSTFKISLPTPIMSGVRTPTRQFSSCVLIEC--GDSLDSINA 239
Query: 234 TLKKCAIISKSAGGIGLSIHNIRASGSYIHGTNGSSNGIVPMLQVFNDTARYVDQGGGKR 293
T GIG++ IRA GS I G G +P + F + QGG R
Sbjct: 240 TASSIVRYVSQRAGIGINAGRIRALGSEIRGGEAFHTGCIPFYKYFQTAVKCCSQGG-VR 298
Query: 294 KGAFAIYLEPWHADIFEFLDLRKNQGKEECRARDLFYALWVPDLFMERVRDDGKWSLFCP 353
GA ++ WH + L L+ N+G EE R R + Y + + L +R+ + G +LF P
Sbjct: 299 GGAATVFYPLWHGEAESLLVLKNNRGVEENRVRHMDYGVQLNKLMYKRLVEGGNITLFSP 358
Query: 354 SDASGLADSW---GIEFEHLYSQYEEEGRAKM-VISARKLWFEILNSQIETGTPYMLFKD 409
SD GL D++ EFE LY +YE + K + A +++ ++ + TG Y+ D
Sbjct: 359 SDVPGLYDAFFQDQDEFERLYVKYENDPSIKKKTVKALEIFTLLMQERASTGRIYIQNVD 418
Query: 410 SCNRKSNQQNLGTIKSSNLCTEIVEFSSPEETAVCNLASIALPRYVREKGVPVQSNVSKL 469
CN S + +E + P LA++ E G +S
Sbjct: 419 HCNTHSPFD--AAVAPVRQSNLCLEIALPTSP----LANVE-----DESGEIALCTLSAF 467
Query: 470 -VGSRDSKNRLFDFERLAEVTKIITENLNKIIDVNHYPIETTRRSNLRHRPIGIGIQGLA 528
+G+ +S L DFE L++ ++ L+ ++D YP+ RRS++ R +G+G+ A
Sbjct: 468 NLGAIES---LDDFEELSD---LVVRALDALLDYQDYPLPAARRSSMNRRTLGVGVINYA 521
Query: 529 DTFILLGLPFESPEAQQLNKDIFETIYYHALKASAELAVKDGPYETYFGSPMSKGILQVD 588
G+ + A L FE + YH L+AS +LA + G + + +KG++ +D
Sbjct: 522 YYLAKNGVKYSDGSANGLTHRTFEAMQYHLLRASMKLAKEQGRCPLFHETNYAKGLMPID 581
Query: 589 MW----NITPSD--RWDWSSLREMISKNGVRNSLLVAPMPTASTSQILGNNECFEPYTSN 642
+ ++ ++ +DW LR I ++G+RNS L A MP+ ++SQI EP
Sbjct: 582 TYKKDIDLVCAEPLHYDWDKLRHEIMEHGLRNSTLTALMPSETSSQISNATNGIEPPRGY 641
Query: 643 IYTRRVLSG--EFIVVNKHLLKDLTELGLWS 671
+ + G + +V LK+ EL LW+
Sbjct: 642 VSVKASKDGILKQVVPEFTRLKENYEL-LWN 671
>TIGR_CMR|VC_1256 [details] [associations]
symbol:VC_1256 "ribonucleoside-diphosphate reductase, alpha
subunit" species:686 "Vibrio cholerae O1 biovar El Tor" [GO:0004748
"ribonucleoside-diphosphate reductase activity, thioredoxin
disulfide as acceptor" evidence=ISS] [GO:0009265
"2'-deoxyribonucleotide biosynthetic process" evidence=ISS]
InterPro:IPR000788 InterPro:IPR008926 InterPro:IPR013346
InterPro:IPR013509 Pfam:PF00317 Pfam:PF02867 PRINTS:PR01183
PROSITE:PS00089 UniPathway:UPA00326 Pfam:PF03477 GO:GO:0005524
GO:GO:0006260 GenomeReviews:AE003852_GR InterPro:IPR005144
PROSITE:PS51161 GO:GO:0009265 KO:K00525 GO:GO:0005971 GO:GO:0004748
SUPFAM:SSF48168 TIGRFAMs:TIGR02506 OMA:YKYGVKT ProtClustDB:PRK09103
HSSP:P00452 EMBL:AE004204 PIR:E82223 RefSeq:NP_230901.1
ProteinModelPortal:Q9KSK0 SMR:Q9KSK0 DNASU:2614693 GeneID:2614693
KEGG:vch:VC1256 PATRIC:20081592 Uniprot:Q9KSK0
Length = 761
Score = 547 (197.6 bits), Expect = 2.6e-51, P = 2.6e-51
Identities = 186/691 (26%), Positives = 303/691 (43%)
Query: 3 VIKRDGRKEPVRFDKITARLKKLSYGLSKEHCDPVLVAQKVCAGVYKGVTTTQLDELAAE 62
V KRDGRKE + DKI + + GL V + + Y G+TT+ + E +
Sbjct: 7 VTKRDGRKENIDLDKIHRVITWAAEGLQNVSVSQVELRAHI--QFYDGITTSDIHETIIK 64
Query: 63 TAAAMTVNH-PDYALLAGRVAVSNLHKITKNSFSETIKDMYNYYNKRSGKKASLVADDVY 121
+AA + PDY LA R+AV +L K + + GK + +D Y
Sbjct: 65 SAADLISEETPDYQYLAARLAVFHLRKKAYGQYEPPTLLAHVTKMVEKGKYDKHLLED-Y 123
Query: 122 EIIMKNAACLDGAIIXXXXXXXXXXXXKTLERSYLL--KMDSRVVERPQHMLMRVSVGI- 178
+ +D I K LE Y + ++ ++ E Q + + V+ +
Sbjct: 124 T--REELELMDQFIDHRRDLDFSYAAVKQLEGKYFVQNRVTGQIYESAQFLYILVAACLF 181
Query: 179 --HKDDT--DSALKTYHLMSQHWFTHATPTLFNAGTPQPQLSSCFLL-CMKDDSIEGIYD 233
+ +T D + Y S + TP + TP Q SSC L+ C DS++ I
Sbjct: 182 AKYPKETRLDYIKRFYDATSTFKISLPTPIMSGVRTPTRQFSSCVLIEC--GDSLDSINA 239
Query: 234 TLKKCAIISKSAGGIGLSIHNIRASGSYIHGTNGSSNGIVPMLQVFNDTARYVDQGGGKR 293
T GIG++ IRA GS I G G +P + F + QGG R
Sbjct: 240 TASSIVRYVSQRAGIGINAGRIRALGSEIRGGEAFHTGCIPFYKYFQTAVKCCSQGG-VR 298
Query: 294 KGAFAIYLEPWHADIFEFLDLRKNQGKEECRARDLFYALWVPDLFMERVRDDGKWSLFCP 353
GA ++ WH + L L+ N+G EE R R + Y + + L +R+ + G +LF P
Sbjct: 299 GGAATVFYPLWHGEAESLLVLKNNRGVEENRVRHMDYGVQLNKLMYKRLVEGGNITLFSP 358
Query: 354 SDASGLADSW---GIEFEHLYSQYEEEGRAKM-VISARKLWFEILNSQIETGTPYMLFKD 409
SD GL D++ EFE LY +YE + K + A +++ ++ + TG Y+ D
Sbjct: 359 SDVPGLYDAFFQDQDEFERLYVKYENDPSIKKKTVKALEIFTLLMQERASTGRIYIQNVD 418
Query: 410 SCNRKSNQQNLGTIKSSNLCTEIVEFSSPEETAVCNLASIALPRYVREKGVPVQSNVSKL 469
CN S + +E + P LA++ E G +S
Sbjct: 419 HCNTHSPFD--AAVAPVRQSNLCLEIALPTSP----LANVE-----DESGEIALCTLSAF 467
Query: 470 -VGSRDSKNRLFDFERLAEVTKIITENLNKIIDVNHYPIETTRRSNLRHRPIGIGIQGLA 528
+G+ +S L DFE L++ ++ L+ ++D YP+ RRS++ R +G+G+ A
Sbjct: 468 NLGAIES---LDDFEELSD---LVVRALDALLDYQDYPLPAARRSSMNRRTLGVGVINYA 521
Query: 529 DTFILLGLPFESPEAQQLNKDIFETIYYHALKASAELAVKDGPYETYFGSPMSKGILQVD 588
G+ + A L FE + YH L+AS +LA + G + + +KG++ +D
Sbjct: 522 YYLAKNGVKYSDGSANGLTHRTFEAMQYHLLRASMKLAKEQGRCPLFHETNYAKGLMPID 581
Query: 589 MW----NITPSD--RWDWSSLREMISKNGVRNSLLVAPMPTASTSQILGNNECFEPYTSN 642
+ ++ ++ +DW LR I ++G+RNS L A MP+ ++SQI EP
Sbjct: 582 TYKKDIDLVCAEPLHYDWDKLRHEIMEHGLRNSTLTALMPSETSSQISNATNGIEPPRGY 641
Query: 643 IYTRRVLSG--EFIVVNKHLLKDLTELGLWS 671
+ + G + +V LK+ EL LW+
Sbjct: 642 VSVKASKDGILKQVVPEFTRLKENYEL-LWN 671
>TIGR_CMR|BA_1371 [details] [associations]
symbol:BA_1371 "ribonucleoside-diphosphate reductase, alpha
subunit, group I intron-containing" species:198094 "Bacillus
anthracis str. Ames" [GO:0004748 "ribonucleoside-diphosphate
reductase activity, thioredoxin disulfide as acceptor"
evidence=ISS] [GO:0009265 "2'-deoxyribonucleotide biosynthetic
process" evidence=ISS] InterPro:IPR000788 InterPro:IPR008926
InterPro:IPR013346 InterPro:IPR013509 InterPro:IPR013554
Pfam:PF00317 Pfam:PF02867 Pfam:PF08343 PRINTS:PR01183
PROSITE:PS00089 UniPathway:UPA00326 GO:GO:0005524 EMBL:AE016879
GenomeReviews:AE016879_GR GO:GO:0006260 GO:GO:0005971 GO:GO:0004748
SUPFAM:SSF48168 TIGRFAMs:TIGR02506 HOGENOM:HOG000246165
InterPro:IPR026459 TIGRFAMs:TIGR04170
EnsemblBacteria:EBBACT00000012288 PATRIC:18780342
ProtClustDB:PRK07632 Uniprot:Q81TB6
Length = 694
Score = 494 (179.0 bits), Expect = 1.1e-50, Sum P(2) = 1.1e-50
Identities = 150/540 (27%), Positives = 260/540 (48%)
Query: 153 RSYLLKMDSR--VVERPQHMLMRVSVGIHKDDTDSALKTYHLMSQHWFTHATPTLFNAG- 209
+ Y LK + + +E + + VS+ + + D A + ++ + + ATPT NAG
Sbjct: 94 KDYALKTNDQKQYLESYEDRVAIVSLYLGRGDVAKAKQFASMIVKQNYQPATPTFLNAGR 153
Query: 210 TPQPQLSSCFLLCMKDDSIEGIYDTLKKCAIISKSAGGIGLSIHNIRASGSYIHGTNGSS 269
+ + ++ SCFLL M DDS+ I + +SK GG+ L++ +RA G I G + ++
Sbjct: 154 SRRGEMVSCFLLEM-DDSLNSIGFNINTAMQLSKIGGGVALNLSKLRARGEQIKGIDNAA 212
Query: 270 NGIVPMLQVFNDTARYVDQGGGKRKGAFAIYLEPWHADIFEFLDLRKNQGKEECRARDLF 329
+G+VP++++ D+ Y +Q G +RKGA A+YL +H DI EFLD +K E+ R + L
Sbjct: 213 SGVVPVMKLLEDSFSYANQLG-QRKGAGAVYLNIFHWDIIEFLDSKKINADEKSRIQSLS 271
Query: 330 YALWVPDLFMERVRDDGKWSLFCP----SDASGLADSWGIEFEHLYSQYEEEGRAK---M 382
+ VP F E + + +F P + D I+ + +Y + + K +
Sbjct: 272 IGIIVPSKFFELAEKNEPFHVFAPYTVYKEYGKHLDD--IDIDEMYDELMSNPKVKKKPL 329
Query: 383 VISARKLWFEILNSQIETGTPYMLFKDSCNRKSNQQNLGTIKSSNLCTEIVEFSSPEETA 442
ISAR + +I Q+E+G PY++FK + N + +++GT+K SNLCTEI + +ET+
Sbjct: 330 DISARDMLIKIAMIQLESGYPYLMFKSNANNQHPLKDIGTVKMSNLCTEIFQL---QETS 386
Query: 443 VCNLASIALPRYVREKGVPVQSNVSKLVGSRDSKNRLFDFERLAEVTKIITENLNKIIDV 502
N +R + N+ GS + N + + + + E E L + D+
Sbjct: 387 EIN--DYGTDDIIRRD---INCNL----GSLNIVN-VMENKEIREAVHAGMEALTAVSDM 436
Query: 503 NHYP-IETTRRSNLRHRPIGIGIQGLADTFILLGLPFESPEAQQLNKDIFETIYYHALKA 561
P T +++N +G+G L + +ES EA++ + F + Y++++
Sbjct: 437 TIIPNAPTVKKANDELHSVGLGAMNLHGYLAKNKIAYESEEAKEFARTFFMMLNYYSIEK 496
Query: 562 SAELAVKDGP------------------YETYFGSPMSKGILQVDMWNITPSDRWDWSSL 603
S E+A + G YET SP+++ + Q+ P+ DW+SL
Sbjct: 497 SMEIAKEKGETFKDFDKSDYANGTYFEKYETTDYSPVTEKVQQLFEGIHIPTKE-DWTSL 555
Query: 604 REMISKNGVRNSLLVAPMPTASTSQILGNNECFEPYTSNIYTRRVLSGEFIVVNKHLLKD 663
+E + KNG+ NS +A PT S S + P S I +R + +L KD
Sbjct: 556 KEQVQKNGLYNSYRLAIAPTQSISYVQNATSSVMPIVSQIESRTYANATTYYPMPYLSKD 615
Score = 87 (35.7 bits), Expect = 1.1e-50, Sum P(2) = 1.1e-50
Identities = 21/64 (32%), Positives = 37/64 (57%)
Query: 699 YKTVWEIKQKTLVDMAADRGCYIDQSQSLNIHMEQP-DHGKLTSLHFYAWSKGMKTGMYY 757
YK+ +++ Q L+D+ A+ +IDQ S +++ +L + YA KG+K+ +YY
Sbjct: 620 YKSSYDMNQFKLIDLIAEIQEHIDQGISTILYVNSDISTRELARYYIYAHKKGLKS-LYY 678
Query: 758 LRTR 761
RTR
Sbjct: 679 TRTR 682
>UNIPROTKB|P00452 [details] [associations]
symbol:nrdA species:83333 "Escherichia coli K-12"
[GO:0015949 "nucleobase-containing small molecule interconversion"
evidence=IDA] [GO:0005971 "ribonucleoside-diphosphate reductase
complex" evidence=IEA;IDA] [GO:0009263 "deoxyribonucleotide
biosynthetic process" evidence=IDA] [GO:0005524 "ATP binding"
evidence=IEA;IDA] [GO:0004748 "ribonucleoside-diphosphate reductase
activity, thioredoxin disulfide as acceptor" evidence=IEA;IDA]
[GO:0055114 "oxidation-reduction process" evidence=IEA] [GO:0006260
"DNA replication" evidence=IEA] InterPro:IPR000788
InterPro:IPR008926 InterPro:IPR013346 InterPro:IPR013509
Pfam:PF00317 Pfam:PF02867 PRINTS:PR01183 PROSITE:PS00089
UniPathway:UPA00326 Pfam:PF03477 GO:GO:0005524 EMBL:U00096
EMBL:AP009048 GenomeReviews:AP009048_GR GenomeReviews:U00096_GR
GO:GO:0006260 GO:GO:0015949 PDB:1QFN PDBsum:1QFN GO:GO:0009263
EMBL:K02672 InterPro:IPR005144 PROSITE:PS51161 eggNOG:COG0209
KO:K00525 GO:GO:0005971 GO:GO:0004748 SUPFAM:SSF48168
TIGRFAMs:TIGR02506 OMA:YKYGVKT EMBL:X06999 PIR:H64993
RefSeq:NP_416737.1 RefSeq:YP_490473.1 PDB:1R1R PDB:1RLR PDB:2R1R
PDB:2X0X PDB:2XAK PDB:2XAP PDB:2XAV PDB:2XAW PDB:2XAX PDB:2XAY
PDB:2XAZ PDB:2XO4 PDB:2XO5 PDB:3R1R PDB:3UUS PDB:4ERM PDB:4ERP
PDB:4R1R PDB:5R1R PDB:6R1R PDB:7R1R PDBsum:1R1R PDBsum:1RLR
PDBsum:2R1R PDBsum:2X0X PDBsum:2XAK PDBsum:2XAP PDBsum:2XAV
PDBsum:2XAW PDBsum:2XAX PDBsum:2XAY PDBsum:2XAZ PDBsum:2XO4
PDBsum:2XO5 PDBsum:3R1R PDBsum:3UUS PDBsum:4ERM PDBsum:4ERP
PDBsum:4R1R PDBsum:5R1R PDBsum:6R1R PDBsum:7R1R
ProteinModelPortal:P00452 SMR:P00452 DIP:DIP-584N IntAct:P00452
MINT:MINT-1233906 PaxDb:P00452 PRIDE:P00452
EnsemblBacteria:EBESCT00000000432 EnsemblBacteria:EBESCT00000016572
GeneID:12933136 GeneID:946612 KEGG:ecj:Y75_p2196 KEGG:eco:b2234
PATRIC:32119827 EchoBASE:EB0654 EcoGene:EG10660
HOGENOM:HOG000278076 ProtClustDB:PRK09103
BioCyc:EcoCyc:NRDA-MONOMER BioCyc:ECOL316407:JW2228-MONOMER
BioCyc:MetaCyc:NRDA-MONOMER SABIO-RK:P00452
EvolutionaryTrace:P00452 Genevestigator:P00452 Uniprot:P00452
Length = 761
Score = 516 (186.7 bits), Expect = 2.8e-47, P = 2.8e-47
Identities = 186/693 (26%), Positives = 295/693 (42%)
Query: 1 MYVIKRDGRKEPVRFDKITARLKKLSYGLSKEHCDPVLVAQKVCAGVYKGVTTTQLDELA 60
+ V KRDG E + DKI L + GL V + + Y G+ T+ + E
Sbjct: 5 LLVTKRDGSTERINLDKIHRVLDWAAEGLHNVSISQVELRSHI--QFYDGIKTSDIHETI 62
Query: 61 AETAAAM-TVNHPDYALLAGRVAVSNLHKITKNSFSETIKDMYNYYNK--RSGKKASLVA 117
+ AA + + + PDY LA R+A+ +L K F +Y++ K GK + +
Sbjct: 63 IKAAADLISRDAPDYQYLAARLAIFHLRKKAYGQFEPPA--LYDHVVKMVEMGKYDNHLL 120
Query: 118 DDVYEIIMKNAACLDGAIIXXXXXXXXXXXXKTLERSYLL--KMDSRVVERPQHMLMRVS 175
+D E K +D I K LE YL+ ++ + E Q + + V+
Sbjct: 121 EDYTEEEFKQ---MDTFIDHDRDMTFSYAAVKQLEGKYLVQNRVTGEIYESAQFLYILVA 177
Query: 176 VGIHKD-DTDSAL----KTYHLMSQHWFTHATPTLFNAGTPQPQLSSCFLL-CMKDDSIE 229
+ + ++ L + Y +S + TP + TP Q SSC L+ C DS++
Sbjct: 178 ACLFSNYPRETRLQYVKRFYDAVSTFKISLPTPIMSGVRTPTRQFSSCVLIEC--GDSLD 235
Query: 230 GIYDTLKKCAIISKSAGGIGLSIHNIRASGSYIHGTNGSSNGIVPMLQVFNDTARYVDQG 289
I T GIG++ IRA GS I G G +P + F + QG
Sbjct: 236 SINATSSAIVKYVSQRAGIGINAGRIRALGSPIRGGEAFHTGCIPFYKHFQTAVKSCSQG 295
Query: 290 GGKRKGAFAIYLEPWHADIFEFLDLRKNQGKEECRARDLFYALWVPDLFMERVRDDGKWS 349
G R GA ++ WH ++ L L+ N+G E R R + Y + + L R+ +
Sbjct: 296 G-VRGGAATLFYPMWHLEVESLLVLKNNRGVEGNRVRHMDYGVQINKLMYTRLLKGEDIT 354
Query: 350 LFCPSDASGLADSWGI---EFEHLYSQYEEEGRA-KMVISARKLWFEILNSQIETGTPYM 405
LF PSD GL D++ EFE LY++YE++ K + A +L+ ++ + TG Y+
Sbjct: 355 LFSPSDVPGLYDAFFADQEEFERLYTKYEKDDSIRKQRVKAVELFSLMMQERASTGRIYI 414
Query: 406 LFKDSCNRKSNQQNLGTIKSSNLCTEIVEFSSPEETAVCNLASIALPRYVREKGVPVQSN 465
D CN S + ++ +C IALP
Sbjct: 415 QNVDHCNTHSPFDPA--------------IAPVRQSNLC--LEIALPTKPLNDVNDENGE 458
Query: 466 VSKLVGSRDSKNRLFDFERLAEVTKIITENLNKIIDVNHYPIETTRRSNLRHRPIGIGIQ 525
++ S + + + + L E+ + L+ ++D YPI +R + R +GIG+
Sbjct: 459 IALCTLSAFNLGAINNLDELEELAILAVRALDALLDYQDYPIPAAKRGAMGRRTLGIGVI 518
Query: 526 GLADTFILLGLPFESPEAQQLNKDIFETIYYHALKASAELAVKDGPYETYFGSPMSKGIL 585
A G + A L FE I Y+ LKAS ELA + G + + +KGIL
Sbjct: 519 NFAYYLAKHGKRYSDGSANNLTHKTFEAIQYYLLKASNELAKEQGACPWFNETTYAKGIL 578
Query: 586 QVDMWNI---TPSDR---WDWSSLREMISKNGVRNSLLVAPMPTASTSQILGNNECFEPY 639
+D + T ++ +DW +LRE I +G+RNS L A MP+ ++SQI EP
Sbjct: 579 PIDTYKKDLDTIANEPLHYDWEALRESIKTHGLRNSTLSALMPSETSSQISNATNGIEPP 638
Query: 640 TSNIYTRRVLSGEF--IVVNKHLLKDLTELGLW 670
+ + G +V + L D EL LW
Sbjct: 639 RGYVSIKASKDGILRQVVPDYEHLHDAYEL-LW 670
>UNIPROTKB|I3LEK6 [details] [associations]
symbol:I3LEK6 "Ribonucleoside-diphosphate reductase"
species:9823 "Sus scrofa" [GO:0006260 "DNA replication"
evidence=IEA] [GO:0004748 "ribonucleoside-diphosphate reductase
activity, thioredoxin disulfide as acceptor" evidence=IEA]
[GO:0005971 "ribonucleoside-diphosphate reductase complex"
evidence=IEA] [GO:0005524 "ATP binding" evidence=IEA]
InterPro:IPR000788 InterPro:IPR008926 InterPro:IPR013509
Pfam:PF00317 Pfam:PF02867 UniPathway:UPA00326 GO:GO:0005524
GO:GO:0006260 GO:GO:0005971 GO:GO:0004748 SUPFAM:SSF48168
GeneTree:ENSGT00390000001372 EMBL:CU466349
Ensembl:ENSSSCT00000032470 Uniprot:I3LEK6
Length = 135
Score = 495 (179.3 bits), Expect = 9.9e-47, P = 9.9e-47
Identities = 91/118 (77%), Positives = 111/118 (94%)
Query: 170 MLMRVSVGIHKDDTDSALKTYHLMSQHWFTHATPTLFNAGTPQPQLSSCFLLCMKDDSIE 229
MLMRVSVGIHK+D D+A++TY+L+S+ WFTHA+PTLFNAGT +PQLSSCFLL MKDDSIE
Sbjct: 1 MLMRVSVGIHKEDIDAAIETYNLLSEKWFTHASPTLFNAGTNRPQLSSCFLLSMKDDSIE 60
Query: 230 GIYDTLKKCAIISKSAGGIGLSIHNIRASGSYIHGTNGSSNGIVPMLQVFNDTARYVD 287
GIYDTLK+CA+ISKSAGGIG+++ IRA+GSYI GTNG+SNG+VPML+V+N+TARYVD
Sbjct: 61 GIYDTLKQCALISKSAGGIGVAVSCIRATGSYIAGTNGNSNGLVPMLRVYNNTARYVD 118
>TIGR_CMR|SO_2415 [details] [associations]
symbol:SO_2415 "ribonucleoside-diphosphate reductase, alpha
subunit" species:211586 "Shewanella oneidensis MR-1" [GO:0004748
"ribonucleoside-diphosphate reductase activity, thioredoxin
disulfide as acceptor" evidence=ISS] [GO:0009265
"2'-deoxyribonucleotide biosynthetic process" evidence=ISS]
InterPro:IPR000788 InterPro:IPR008926 InterPro:IPR013346
InterPro:IPR013509 Pfam:PF00317 Pfam:PF02867 PRINTS:PR01183
PROSITE:PS00089 UniPathway:UPA00326 Pfam:PF03477 GO:GO:0005524
GO:GO:0006260 EMBL:AE014299 GenomeReviews:AE014299_GR
InterPro:IPR005144 PROSITE:PS51161 KO:K00525 GO:GO:0005971
GO:GO:0004748 SUPFAM:SSF48168 TIGRFAMs:TIGR02506 OMA:YKYGVKT
HOGENOM:HOG000278076 ProtClustDB:PRK09103 RefSeq:NP_718005.1
HSSP:P00452 ProteinModelPortal:Q8EEG7 SMR:Q8EEG7 GeneID:1170130
KEGG:son:SO_2415 PATRIC:23524447 Uniprot:Q8EEG7
Length = 762
Score = 502 (181.8 bits), Expect = 1.3e-45, P = 1.3e-45
Identities = 187/693 (26%), Positives = 294/693 (42%)
Query: 1 MYVIKRDGRKEPVRFDKITARLKKLSYGLSKEHCDPVLVAQKVCAGVYKGVTTTQLDELA 60
M V KR G +E + DKI + + GL V + + + G+ T + E
Sbjct: 5 MTVTKRCGARETIDLDKIHRVITWAAKGLKNVSVSEVELRTHL--QFFDGIPTEAIHETI 62
Query: 61 AETAAAM-TVNHPDYALLAGRVAVSNLHKITKNSFSETIKDMYNYYNK--RSGKKASLVA 117
++AA + + PDY LA R+AV +L K F E K +Y++ K GK +
Sbjct: 63 IKSAADLISPESPDYQFLAARLAVFHLRKKAFGQF-EPPK-LYDHVTKLVELGKYDMHIL 120
Query: 118 DDVYEIIMKNAACLDGAIIXXXXXXXXXXXXKTLERSYLL--KMDSRVVERPQHMLMRVS 175
D Y + +D I K LE YL+ ++ + E Q + + V+
Sbjct: 121 QD-YT--REELDIMDTYIDHWRDMNFSYAAVKQLEGKYLVQNRVTHEIYESAQFLYILVA 177
Query: 176 VGIH----KDDTDSALKT-YHLMSQHWFTHATPTLFNAGTPQPQLSSCFLL-CMKDDSIE 229
+ K+ +K Y +S + TP + TP Q SSC L+ C DS++
Sbjct: 178 ACLFARYPKETRLQYVKDFYDAVSTFKISLPTPIMAGVRTPTRQFSSCVLIEC--GDSLD 235
Query: 230 GIYDTLKKCAIISKSAGGIGLSIHNIRASGSYIHGTNGSSNGIVPMLQVFNDTARYVDQG 289
I T GIG++ IRA GS I G G +P + F + QG
Sbjct: 236 SINATASSIVKYVSQRAGIGINAGRIRALGSPIRGGEAFHTGCLPFYKYFQTAVKSCSQG 295
Query: 290 GGKRKGAFAIYLEPWHADIFEFLDLRKNQGKEECRARDLFYALWVPDLFMERVRDDGKWS 349
G R GA ++ WH ++ L L+ N+G E+ R R L Y + + L +R+ S
Sbjct: 296 G-VRGGAATLFYPIWHLEVESLLVLKNNRGVEDNRIRHLDYGVQLNKLMYQRLIKGESIS 354
Query: 350 LFCPSDASGLADSW---GIEFEHLYSQYEEEGRA-KMVISARKLWFEILNSQIETGTPYM 405
LF PSD GL D++ EFE LY QYE++ K + A L+ ++ + TG Y+
Sbjct: 355 LFSPSDVPGLYDAFFEDQAEFERLYLQYEQDSSIRKKTLKAVDLFSLMMQERASTGRIYI 414
Query: 406 LFKDSCNRKSNQQNLGTIKSSNLCTEIVEFSSPEETAVCNLASIALPRYVREKGVPVQSN 465
D CN S + + + ++ +C IALP
Sbjct: 415 QNVDHCNTHSPFDS--------------KVAPIRQSNLC--LEIALPTKPLNNIDDPNGE 458
Query: 466 VSKLVGSRDSKNRLFDFERLAEVTKIITENLNKIIDVNHYPIETTRRSNLRHRPIGIGIQ 525
++ S + + D L + + L+ ++D YPI+ + S++ R +GIG+
Sbjct: 459 IALCTLSALNLGTITDLAELEPLADLAVRALDNLLDYQDYPIKAAQISSMNRRTLGIGVI 518
Query: 526 GLADTFILLGLPFESPEAQQLNKDIFETIYYHALKASAELAVKDGPYETYFGSPMSKGIL 585
A+ G+ + A L FE I ++ LKAS LA + G + + ++GIL
Sbjct: 519 NFANYLAKNGMKYSDGSANNLTHKTFEAIQFYLLKASMNLAKEKGACPLFNETTYAQGIL 578
Query: 586 QVDMWN-----ITPSD-RWDWSSLREMISKNGVRNSLLVAPMPTASTSQILGNNECFEPY 639
+D + I DW +LR I + G+RNS L A MP+ ++SQI EP
Sbjct: 579 PIDTYKRDLDKICSEPLHLDWEALRSDIKEYGLRNSTLSALMPSETSSQISNATNGIEPP 638
Query: 640 TSNIYTRRVLSGEF--IVVNKHLLKDLTELGLW 670
I + G+ +V + LK+ EL LW
Sbjct: 639 RGLISVKASKDGQLKQVVPDFDTLKNNYEL-LW 670
>TIGR_CMR|CHY_0676 [details] [associations]
symbol:CHY_0676 "ribonucleoside-diphosphate reductase,
adenosylcobalamin-dependent, intein-containing" species:246194
"Carboxydothermus hydrogenoformans Z-2901" [GO:0005971
"ribonucleoside-diphosphate reductase complex" evidence=ISS]
[GO:0015949 "nucleobase-containing small molecule interconversion"
evidence=ISS] InterPro:IPR000788 InterPro:IPR004042
InterPro:IPR006141 InterPro:IPR006142 InterPro:IPR008926
InterPro:IPR013344 InterPro:IPR013509 Pfam:PF00317 Pfam:PF02867
PRINTS:PR00379 PROSITE:PS50817 PROSITE:PS50819 UniPathway:UPA00326
GO:GO:0005524 EMBL:CP000141 GenomeReviews:CP000141_GR GO:GO:0006260
GO:GO:0004519 GO:GO:0031419 InterPro:IPR003587 SMART:SM00306
GO:GO:0016539 TIGRFAMs:TIGR01445 eggNOG:COG0209
HOGENOM:HOG000229277 KO:K00525 GO:GO:0005971 GO:GO:0004748
SUPFAM:SSF48168 TIGRFAMs:TIGR02504 InterPro:IPR024434 Pfam:PF12637
RefSeq:YP_359531.1 STRING:Q3AEA3 GeneID:3727979 KEGG:chy:CHY_0676
PATRIC:21274485 OMA:IFDAVKH BioCyc:CHYD246194:GJCN-676-MONOMER
Uniprot:Q3AEA3
Length = 1101
Score = 291 (107.5 bits), Expect = 8.4e-43, Sum P(4) = 8.4e-43
Identities = 78/215 (36%), Positives = 115/215 (53%)
Query: 149 KTLERSYLLKMDS-RVVERPQHMLMRVSVGI--------HKDDTDSALKTYHLMSQHWFT 199
K LE YL + + V+E P+ M RV+ I D+ + A + Y+ M+ F
Sbjct: 10 KVLEARYLARNEKGEVIETPEEMFWRVARAIAQAEKNYAENDEEEIAREFYNFMTALDFL 69
Query: 200 HATPTLFNAGTPQPQLSSCFLLCMKDDSIEGIYDTLKKCAIISKSAGGIGLSIHNIRASG 259
TPTL NAG P QLS+CF+L + DS+E I+D +K A+I KS GG G S +RA G
Sbjct: 70 PNTPTLVNAGRPLGQLSACFVLPV-GDSMEEIFDAVKYSALIHKSGGGTGFSFSRLRAKG 128
Query: 260 SYIHGTNGSSNGIVPMLQVFNDTARYVDQGGGKRKGAFAIYLEPWHADIFEFLDLRKNQG 319
+ + T G ++G V ++VFN V QGG R+GA L H DI EF+ +++
Sbjct: 129 ARVRSTGGIASGPVSFMKVFNAATEAVKQGG-VRRGANMGVLRCDHPDILEFITAKEDN- 186
Query: 320 KEECRARDLFYALWVPDLFMERVRDDGKWSLFCPS 354
+ ++ AL D FM+ + +DG++ L PS
Sbjct: 187 -RDITNFNISVAL--TDKFMKALEEDGEYELIEPS 218
Score = 174 (66.3 bits), Expect = 8.4e-43, Sum P(4) = 8.4e-43
Identities = 41/124 (33%), Positives = 66/124 (53%)
Query: 460 VPVQS-NVSKLVGSRDSKNRLFDFERLAEVTKIITENLNKIIDVNHYPIETTRRSNLRHR 518
+P +S N+ + + K+ D+E L + K+ L+ +IDVNHYP+ + + R
Sbjct: 622 LPYESCNLGSINLANMVKDGEIDWEHLEKTVKLAVRFLDNVIDVNHYPLPEIEKMTKKTR 681
Query: 519 PIGIGIQGLADTFILLGLPFESPEAQQLNKDIFETIYYHALKASAELAVKDGPYETYFGS 578
IG+G+ G AD I L +P++S EA L + E I + +ASAELA G + + S
Sbjct: 682 KIGLGVMGFADMLIKLNIPYDSEEALNLADKVMEFINKKSKEASAELARVRGTFPAWKKS 741
Query: 579 PMSK 582
+K
Sbjct: 742 VWAK 745
Score = 109 (43.4 bits), Expect = 8.4e-43, Sum P(4) = 8.4e-43
Identities = 36/127 (28%), Positives = 62/127 (48%)
Query: 608 SKNGV--RNSLLVAPMPTASTSQILGNNECFEPYTSNIYTRRVLSGEFIV-VNKHLLKDL 664
+K G+ RN+ PT S S I G + EP + + R +L + IV V++ +
Sbjct: 744 AKKGLKLRNATTTTIAPTGSISIIAGVSSGIEPVFALAFKRHILDRKDIVEVHRLFEQHA 803
Query: 665 TELGLWSHALKTKIIYENGSVSKISEIPEELKAIYKTVWEIKQKTLVDMAADRGCYIDQS 724
E G +S L ++ + G ++ I+ +PEE K ++ T +I + V M A + D +
Sbjct: 804 RENGYYSEKLMNEVA-KTGRITGIAGVPEEAKRLFVTALDIAPEWHVKMQAVFQKHTDNA 862
Query: 725 QSLNIHM 731
S I+M
Sbjct: 863 VSKTINM 869
Score = 61 (26.5 bits), Expect = 8.4e-43, Sum P(4) = 8.4e-43
Identities = 18/61 (29%), Positives = 32/61 (52%)
Query: 373 QYE--EEGRAKMV--ISARKLWFEILNSQIETGTPYMLFKDSCNRKSNQQNLGTIKSSNL 428
+YE E ++V + AR+++ I + + G P ++F D N + LG I+S+N
Sbjct: 211 EYELIEPSTGEVVGRLRAREVFERIARNAWKNGEPGVIFIDRINAANVVPELGEIESTNP 270
Query: 429 C 429
C
Sbjct: 271 C 271
>UNIPROTKB|H0YCY7 [details] [associations]
symbol:RRM1 "Ribonucleoside-diphosphate reductase"
species:9606 "Homo sapiens" [GO:0005524 "ATP binding" evidence=IEA]
[GO:0005971 "ribonucleoside-diphosphate reductase complex"
evidence=IEA] [GO:0004748 "ribonucleoside-diphosphate reductase
activity, thioredoxin disulfide as acceptor" evidence=IEA]
[GO:0006260 "DNA replication" evidence=IEA] InterPro:IPR000788
InterPro:IPR008926 InterPro:IPR013509 Pfam:PF00317 Pfam:PF02867
UniPathway:UPA00326 GO:GO:0005524 GO:GO:0006260 GO:GO:0005971
GO:GO:0004748 SUPFAM:SSF48168 HGNC:HGNC:10451 ChiTaRS:RRM1
EMBL:AC015689 Ensembl:ENST00000528442 Uniprot:H0YCY7
Length = 130
Score = 449 (163.1 bits), Expect = 1.1e-41, P = 1.1e-41
Identities = 85/113 (75%), Positives = 101/113 (89%)
Query: 189 TYHLMSQHWFTHATPTLFNAGTPQPQLSSCFLLCMKDDSIEGIYDTLKKCAIISKSAGGI 248
TY+L+S+ WFTHA+PTLFNAGT +PQLSSCFLL MKDDSIEGIYDTLK+CA+ISKSAGGI
Sbjct: 2 TYNLLSERWFTHASPTLFNAGTNRPQLSSCFLLSMKDDSIEGIYDTLKQCALISKSAGGI 61
Query: 249 GLSIHNIRASGSYIHGTNGSSNGIVPMLQVFNDTARYVDQGGGKRKGAFAIYL 301
G+++ IRA+GSYI GTNG+SNG+VPML+V+N+TARYVDQGG KR IYL
Sbjct: 62 GVAVSCIRATGSYIAGTNGNSNGLVPMLRVYNNTARYVDQGGNKR---IMIYL 111
>TIGR_CMR|DET_0623 [details] [associations]
symbol:DET_0623 "ribonucleotide reductase" species:243164
"Dehalococcoides ethenogenes 195" [GO:0004748
"ribonucleoside-diphosphate reductase activity, thioredoxin
disulfide as acceptor" evidence=ISS] [GO:0009265
"2'-deoxyribonucleotide biosynthetic process" evidence=ISS]
InterPro:IPR000788 InterPro:IPR008926 InterPro:IPR013344
InterPro:IPR013509 Pfam:PF00317 Pfam:PF02867 PRINTS:PR01183
UniPathway:UPA00326 GO:GO:0005524 GO:GO:0006260 EMBL:CP000027
GenomeReviews:CP000027_GR GO:GO:0031419 eggNOG:COG0209
HOGENOM:HOG000229277 KO:K00525 GO:GO:0005971 GO:GO:0004748
SUPFAM:SSF48168 TIGRFAMs:TIGR02504 RefSeq:YP_181365.1
ProteinModelPortal:Q3Z8T4 STRING:Q3Z8T4 GeneID:3230018
KEGG:det:DET0623 PATRIC:21608313 OMA:FIDRIND ProtClustDB:CLSK837372
BioCyc:DETH243164:GJNF-624-MONOMER Uniprot:Q3Z8T4
Length = 599
Score = 257 (95.5 bits), Expect = 8.0e-40, Sum P(3) = 8.0e-40
Identities = 74/216 (34%), Positives = 113/216 (52%)
Query: 149 KTLERSYLLK-MDSRVVERPQHMLMRVSVGI------HKDDTDSAL---KTYHLMSQHWF 198
+ LE+ YL K + RV+E P+ M RV+ + + D++ + Y MS+ F
Sbjct: 22 RVLEKRYLKKDANGRVIETPEDMFRRVARVVASAECKYAPGADTSRIEDEFYQAMSRLEF 81
Query: 199 THATPTLFNAGTPQPQLSSCFLLCMKDDSIEGIYDTLKKCAIISKSAGGIGLSIHNIRAS 258
+PTL NAG QLS+CF+L + +DSIE I+D +K+ A+I KS GG G S N+R +
Sbjct: 82 LPNSPTLLNAGRQVGQLSACFVLPV-EDSIESIFDAVKQTALIHKSGGGTGFSFSNLRPA 140
Query: 259 GSYIHGTNGSSNGIVPMLQVFNDTARYVDQGGGKRKGAFAIYLEPWHADIFEFLDLRKNQ 318
G + + G V ++ +F+ A YV QGG R+G A L+ H DI +F+
Sbjct: 141 GDKVGELTEVAGGPVSVINIFSAAADYVRQGG-VRRGCNAAILDVTHPDILKFISC---- 195
Query: 319 GKEECRARDLFY-ALWVPDLFMERVRDDGKWSLFCP 353
K + A FY ++ V FM +VR + + P
Sbjct: 196 -KGDPNALTNFYISVVVTREFMTKVRSGEDYDIINP 230
Score = 191 (72.3 bits), Expect = 8.0e-40, Sum P(3) = 8.0e-40
Identities = 46/135 (34%), Positives = 71/135 (52%)
Query: 444 CNLASIALPRYVREKGVPVQSNVSKLVGSRDSKNRLFDFERLAEVTKIITENLNKIIDVN 503
CNL SI+LPR ++ RD + + D+E+L K+ L+ +IDVN
Sbjct: 295 CNLGSISLPRMLK----------------RDGERVVVDYEKLGRTVKMAIRFLDNVIDVN 338
Query: 504 HYPIETTRRSNLRHRPIGIGIQGLADTFILLGLPFESPEAQQLNKDIFETIYYHALKASA 563
+P ++ LR+R IG+G+ G AD +L+G+P+ S EA I E I + +AS+
Sbjct: 339 RFPTPEIEKATLRNRKIGLGVMGFADMLVLMGIPYNSEEAIFQADQIMEFIKETSHRASS 398
Query: 564 ELAVKDGPYETYFGS 578
+LA G + Y GS
Sbjct: 399 KLAEARGSFPAYEGS 413
Score = 103 (41.3 bits), Expect = 8.0e-40, Sum P(3) = 8.0e-40
Identities = 37/156 (23%), Positives = 73/156 (46%)
Query: 612 VRNSLLVAPMPTASTSQILGNNECFEPYTSNIYTRRVLSGEFIV-VNKHLLKDLTELGLW 670
+RN+ + PT + S I G + EP + ++ R +L GE ++ +N + + G
Sbjct: 423 MRNATCTSIAPTGTLSIIAGVSSGIEPSFAMVFVRNILDGENLLEINPYFEEMARREGFH 482
Query: 671 SHALKTKIIYENGSVSKISEIPEELKAIYKTVWEIKQKTLVDMAADRGCYIDQSQSLNIH 730
S L K++ N + + +P+ LK + T I+ + + + A Y D + S ++
Sbjct: 483 SKELFEKLVSSN-HLHDMECVPDWLKRLLVTAHRIRPEWHIRIQAAFQKYTDNAVSKTVN 541
Query: 731 ME-QPDHGKLTSLHFYAWSKGMKTGMYYLR--TRAA 763
+ + ++ A+ KG+K G+ R +RAA
Sbjct: 542 FSHEATREDMANVFNLAYDKGLK-GITVYRDGSRAA 576
Score = 96 (38.9 bits), Expect = 5.9e-30, Sum P(3) = 5.9e-30
Identities = 31/106 (29%), Positives = 51/106 (48%)
Query: 393 ILNSQIETGTPYMLFKDSCNRKSNQQNLGTIKSSNLCTEIVEFSSPEETAVCNLASIALP 452
I++ +TG P ++F D N + LG I+ + C E + P E+ CNL SI+LP
Sbjct: 248 IVDQAWKTGDPGLVFIDRINDDNPTPELGRIRHVSGCGE--QTLLPYES--CNLGSISLP 303
Query: 453 RYVREKGVPVQSNVSKLVGSRDSKNRLFDFERLAEVTKIITENLNK 498
R ++ G V + KL R K + + + +V + T + K
Sbjct: 304 RMLKRDGERVVVDYEKL--GRTVKMAIRFLDNVIDVNRFPTPEIEK 347
>TIGR_CMR|GSU_1871 [details] [associations]
symbol:GSU_1871 "ribonucleoside-diphosphate reductase,
putative" species:243231 "Geobacter sulfurreducens PCA" [GO:0004748
"ribonucleoside-diphosphate reductase activity, thioredoxin
disulfide as acceptor" evidence=ISS] [GO:0005971
"ribonucleoside-diphosphate reductase complex" evidence=ISS]
[GO:0009265 "2'-deoxyribonucleotide biosynthetic process"
evidence=ISS] InterPro:IPR000788 InterPro:IPR008926
InterPro:IPR013344 InterPro:IPR013509 Pfam:PF00317 Pfam:PF02867
PRINTS:PR01183 UniPathway:UPA00326 GO:GO:0005524 GO:GO:0006260
EMBL:AE017180 GenomeReviews:AE017180_GR GO:GO:0031419
HOGENOM:HOG000229277 KO:K00525 GO:GO:0005971 GO:GO:0004748
SUPFAM:SSF48168 TIGRFAMs:TIGR02504 InterPro:IPR024434 Pfam:PF12637
OMA:IFDAVKH ProtClustDB:PRK08665 RefSeq:NP_952920.1
ProteinModelPortal:Q74C05 GeneID:2686773 KEGG:gsu:GSU1871
PATRIC:22026607 BioCyc:GSUL243231:GH27-1839-MONOMER Uniprot:Q74C05
Length = 743
Score = 254 (94.5 bits), Expect = 2.2e-38, Sum P(3) = 2.2e-38
Identities = 88/291 (30%), Positives = 138/291 (47%)
Query: 151 LERSYLLKMDS--RVVERPQHMLMRVSVGIHKDDTDS---------ALKTYHLMSQHWFT 199
LE+ YL K D+ V+E P M RV+ I + D + A + Y LM+ F
Sbjct: 22 LEKRYL-KRDTGGNVLETPVDMFQRVARSIAEADKNFDKKADVKALAAQFYELMTSFEFL 80
Query: 200 HATPTLFNAGTPQPQLSSCFLLCMKDDSIEGIYDTLKKCAIISKSAGGIGLSIHNIRASG 259
+PTL NAG QLS+CF+L + DS+E I+D +K A+I KS GG G S +R +
Sbjct: 81 PNSPTLMNAGRELGQLSACFVLPV-GDSMEDIFDAVKYTALIHKSGGGTGFSFSRLRPAH 139
Query: 260 SYIHGTNGSSNGIVPMLQVFNDTARYVDQGGGKRKGAFAIYLEPWHADIFEFLDLRKNQG 319
+ T+G S+G + ++VF+ + QGG R+GA L H DI +F+ + +Q
Sbjct: 140 DVVRSTSGISSGPISFMRVFDAATETIKQGG-TRRGANMGILRVDHPDIMDFIMCKDDQK 198
Query: 320 KEECRARDLFYALWVPDLFMERVRDDGKWSLFCPSDAS--GLADSWGIEFEHLYSQYEEE 377
+ ++ + + FME V D + L P D G ++ + F + Q +
Sbjct: 199 ----HLNNFNISVGLTEAFMEAVERDADYDLINPRDGKPCGTLNARKV-FSRIVKQAWKN 253
Query: 378 GRAKMVISARKLWFEILNSQIETGTPYMLFKDSCNRKSNQQNLGTIKSSNL 428
G ++ R LN + TP++ +S N +Q L +S NL
Sbjct: 254 GEPGIIFLDR------LNK--DNPTPHVGVIESTN-PCGEQPLLPYESCNL 295
Score = 168 (64.2 bits), Expect = 2.2e-38, Sum P(3) = 2.2e-38
Identities = 38/120 (31%), Positives = 64/120 (53%)
Query: 460 VPVQS-NVSKLVGSRDSKNRLFDFERLAEVTKIITENLNKIIDVNHYPIETTRRSNLRHR 518
+P +S N+ + + KN +++RL +V ++ L+ +I+VN+YP+ +R
Sbjct: 288 LPYESCNLGSINLGKMVKNGDVNWDRLRDVVRLAVHFLDNVIEVNNYPLPQISEMTRANR 347
Query: 519 PIGIGIQGLADTFILLGLPFESPEAQQLNKDIFETIYYHALKASAELAVKDGPYETYFGS 578
IG+G+ G AD ILLG+P+ SP+A L + + I S ELA G + + GS
Sbjct: 348 KIGLGVMGWADMLILLGIPYNSPQAISLGEKVMRFINDEGHVYSRELAAVRGSFPNFAGS 407
Score = 121 (47.7 bits), Expect = 2.2e-38, Sum P(3) = 2.2e-38
Identities = 32/130 (24%), Positives = 65/130 (50%)
Query: 602 SLREMISKNGVRNSLLVAPMPTASTSQILGNNECFEPYTSNIYTRRVLSGEFIVVNKHLL 661
S+ + S+ +RN+ + PT + S I + EP + + R+VL +V +
Sbjct: 407 SIYDRASEGPIRNATVTTIAPTGTISIIANASSGVEPLFAVSFIRQVLDKNILVEVNPIF 466
Query: 662 KDLT-ELGLWSHALKTKIIYENGSVSKISEIPEELKAIYKTVWEIKQKTLVDMAADRGCY 720
+++ + G +S L KI +G++ + EIPE+++ I+ T +I + ++M A Y
Sbjct: 467 EEVARQRGFYSEELMQKIA-RHGTIHDLPEIPEDIRKIFVTAHDITPEDHIEMQAAFQKY 525
Query: 721 IDQSQSLNIH 730
D + S ++
Sbjct: 526 TDNAVSKTVN 535
Score = 97 (39.2 bits), Expect = 1.2e-08, Sum P(2) = 1.2e-08
Identities = 26/84 (30%), Positives = 46/84 (54%)
Query: 377 EGRAKMVISARKLWFEILNSQIETGTPYMLFKDSCNRKSNQQNLGTIKSSNLCTEIVEFS 436
+G+ ++ARK++ I+ + G P ++F D N+ + ++G I+S+N C E +
Sbjct: 230 DGKPCGTLNARKVFSRIVKQAWKNGEPGIIFLDRLNKDNPTPHVGVIESTNPCGE--QPL 287
Query: 437 SPEETAVCNLASIALPRYVREKGV 460
P E+ CNL SI L + V+ V
Sbjct: 288 LPYES--CNLGSINLGKMVKNGDV 309
>UNIPROTKB|P0A5W8 [details] [associations]
symbol:nrdE "Ribonucleoside-diphosphate reductase subunit
alpha" species:1773 "Mycobacterium tuberculosis" [GO:0004748
"ribonucleoside-diphosphate reductase activity, thioredoxin
disulfide as acceptor" evidence=IDA] [GO:0005515 "protein binding"
evidence=IPI] [GO:0005524 "ATP binding" evidence=IDA] [GO:0005886
"plasma membrane" evidence=IDA] [GO:0005971
"ribonucleoside-diphosphate reductase complex" evidence=IDA]
[GO:0006260 "DNA replication" evidence=IDA] [GO:0009263
"deoxyribonucleotide biosynthetic process" evidence=IDA]
[GO:0040007 "growth" evidence=IMP] [GO:0051063 "CDP reductase
activity" evidence=IDA] [GO:0055114 "oxidation-reduction process"
evidence=IDA] InterPro:IPR000788 InterPro:IPR008926
InterPro:IPR013346 InterPro:IPR013509 InterPro:IPR013554
Pfam:PF00317 Pfam:PF02867 Pfam:PF08343 PRINTS:PR01183
PROSITE:PS00089 UniPathway:UPA00326 GO:GO:0005886 GO:GO:0005524
GO:GO:0040007 EMBL:AE000516 GenomeReviews:AE000516_GR
GenomeReviews:AL123456_GR GO:GO:0006260 EMBL:BX842581 GO:GO:0009263
eggNOG:COG0209 KO:K00525 GO:GO:0005971 SUPFAM:SSF48168
TIGRFAMs:TIGR02506 EMBL:L34407 PIR:F70861 RefSeq:NP_217567.1
RefSeq:NP_337654.1 ProteinModelPortal:P0A5W8 SMR:P0A5W8
EnsemblBacteria:EBMYCT00000003419 EnsemblBacteria:EBMYCT00000070027
GeneID:888869 GeneID:923996 KEGG:mtc:MT3137 KEGG:mtu:Rv3051c
PATRIC:18128658 TubercuList:Rv3051c HOGENOM:HOG000246165
OMA:VSRIEIR ProtClustDB:PRK08188 GO:GO:0051063 InterPro:IPR026459
TIGRFAMs:TIGR04170 Uniprot:P0A5W8
Length = 725
Score = 432 (157.1 bits), Expect = 1.1e-37, P = 1.1e-37
Identities = 145/524 (27%), Positives = 241/524 (45%)
Query: 154 SYLLK-MDS-RVVERPQHMLMRVSVGIHKDDTDSALKTYHLMSQHWFTHATPTLFNAGTP 211
SY LK D R +ER + ++ V++ + DT A + F ATPT N+G
Sbjct: 122 SYTLKTFDGKRYLERFEDRVVMVALTLAAGDTALAELLVDEIIDGRFQPATPTFLNSGKK 181
Query: 212 QP-QLSSCFLLCMKDDSIEGIYDTLKKCAIISKSAGGIGLSIHNIRASGSYIHGTNGSSN 270
Q + SCFLL + +D++E I ++ +SK GG+ L + NIR G+ I S+
Sbjct: 182 QRGEPVSCFLLRV-EDNMESIGRSINSALQLSKRGGGVALLLTNIREHGAPIKNIENQSS 240
Query: 271 GIVPMLQVFNDTARYVDQGGGKRKGAFAIYLEPWHADIFEFLDLRKNQGKEECRARDLFY 330
G++P++++ D Y +Q G R+GA A+YL H DI+ FLD ++ E+ R + L
Sbjct: 241 GVIPIMKLLEDAFSYANQLGA-RQGAGAVYLHAHHPDIYRFLDTKRENADEKIRIKTLSL 299
Query: 331 ALWVPDLFMERVRDDGKWSLFCPSDASGLADSWGIEF------EHLYSQYEEEGRAKMVI 384
+ +PD+ E + + LF P D + +G+ F E Y ++ K I
Sbjct: 300 GVVIPDITFELAKRNDDMYLFSPYDVERV---YGVPFADISVTEKYYEMVDDARIRKTKI 356
Query: 385 SARKLWFEILNSQIETGTPYMLFKDSCNRKSNQQNLGTIKSSNLCTEIVEFSSPEETAVC 444
AR+ + + Q E+G PY++F+D+ NR +N + G I SNLC+EI++ S+P
Sbjct: 357 KAREFFQTLAELQFESGYPYIMFEDTVNR-ANPID-GKITHSNLCSEILQVSTP------ 408
Query: 445 NLASIALPRYVREKGVPVQSNVSKLVGSRDSKNRLFDFERLAEVTKIITENLNKIIDVNH 504
+L + L Y + V ++S +GS + + D A+ ++ L + D H
Sbjct: 409 SLFNEDLS-YAK-----VGKDISCNLGSLNIAKTM-DSPDFAQTIEVAIRALTAVSDQTH 461
Query: 505 YP-IETTRRSNLRHRPIGIGIQGLADTFILLGLPFESPEAQQLNKDIFETIYYHALKASA 563
+ + + N IG+G L + + S E F T+ YHAL+AS
Sbjct: 462 IKSVPSIEQGNNDSHAIGLGQMNLHGYLARERIFYGSDEGIDFTNIYFYTVLYHALRASN 521
Query: 564 ELAVKDGP---------------YETY---FGSPMSKGILQV--DMWNITPSDRWDWSSL 603
+A++ G ++ Y P ++ + Q+ D P+ DW L
Sbjct: 522 RIAIERGTHFKGFERSKYASGEFFDKYTDQIWEPKTQKVRQLFADAGIRIPTQD-DWRRL 580
Query: 604 REMISKNGVRNSLLVAPMPTASTSQILGNNECFEPYTSNIYTRR 647
+E + +G+ N L A PT S S I + P S + R+
Sbjct: 581 KESVQAHGIYNQNLQAVPPTGSISYINHSTSSIHPIVSKVEIRK 624
Score = 139 (54.0 bits), Expect = 1.3e-05, P = 1.3e-05
Identities = 68/314 (21%), Positives = 129/314 (41%)
Query: 462 VQSNVSKLVGSRDSKNRLFDFERLAEVTKIITENLNKIIDVNHYP-IETTRRSNLRHRPI 520
V ++S +GS + + D A+ ++ L + D H + + + N I
Sbjct: 420 VGKDISCNLGSLNIAKTM-DSPDFAQTIEVAIRALTAVSDQTHIKSVPSIEQGNNDSHAI 478
Query: 521 GIGIQGLADTFILLGLPFESPEAQQLNKDIFETIYYHALKASAELAVKDGPYETYF-GSP 579
G+G L + + S E F T+ YHAL+AS +A++ G T+F G
Sbjct: 479 GLGQMNLHGYLARERIFYGSDEGIDFTNIYFYTVLYHALRASNRIAIERG---THFKGFE 535
Query: 580 MSKGILQVDMWNITPSDRWD--WSSLREMISKNGVRNSLLVAPMPTASTSQILGNN-ECF 636
SK + ++ W+ +R++ + G+R +PT + L + +
Sbjct: 536 RSK-YASGEFFDKYTDQIWEPKTQKVRQLFADAGIR-------IPTQDDWRRLKESVQAH 587
Query: 637 EPYTSNIYTRRVLSGEFIVVNKHLLKDLTELGLWSHALKTKI-IYENGSVSKI----SEI 691
Y N+ +G +N H + H + +K+ I + G + ++ +
Sbjct: 588 GIYNQNLQAVPP-TGSISYIN-HSTSSI-------HPIVSKVEIRKEGKIGRVYYPAPYM 638
Query: 692 PEELKAIYKTVWEIKQKTLVDMAADRGCYIDQSQSLNIHMEQPDHGK-LTSLHFYAWSKG 750
+ Y+ +EI + ++D A ++DQ SL + + + + YAW KG
Sbjct: 639 TNDNLEYYEDAYEIGYEKIIDTYAAATQHVDQGLSLTLFFKDTATTRDVNKAQIYAWRKG 698
Query: 751 MKTGMYYLRTRAAA 764
+KT +YY+R R A
Sbjct: 699 IKT-LYYIRLRQMA 711
>UNIPROTKB|P39452 [details] [associations]
symbol:nrdE species:83333 "Escherichia coli K-12"
[GO:0005737 "cytoplasm" evidence=ISA] [GO:0015949
"nucleobase-containing small molecule interconversion"
evidence=IGI] [GO:0004748 "ribonucleoside-diphosphate reductase
activity, thioredoxin disulfide as acceptor" evidence=IEA;IGI]
[GO:0005971 "ribonucleoside-diphosphate reductase complex"
evidence=IEA;IGI] [GO:0009263 "deoxyribonucleotide biosynthetic
process" evidence=IGI] [GO:0003824 "catalytic activity"
evidence=IEA] [GO:0055114 "oxidation-reduction process"
evidence=IEA] [GO:0016491 "oxidoreductase activity" evidence=IEA]
[GO:0006260 "DNA replication" evidence=IEA] [GO:0005524 "ATP
binding" evidence=IEA] [GO:0000166 "nucleotide binding"
evidence=IEA] InterPro:IPR000788 InterPro:IPR008926
InterPro:IPR013346 InterPro:IPR013509 InterPro:IPR013554
Pfam:PF00317 Pfam:PF02867 Pfam:PF08343 PRINTS:PR01183
PROSITE:PS00089 UniPathway:UPA00326 GO:GO:0005524 EMBL:U00096
EMBL:AP009048 GenomeReviews:AP009048_GR GenomeReviews:U00096_GR
GO:GO:0006260 GO:GO:0015949 GO:GO:0009263 EMBL:X79787
eggNOG:COG0209 KO:K00525 GO:GO:0005971 GO:GO:0004748
SUPFAM:SSF48168 TIGRFAMs:TIGR02506 HOGENOM:HOG000246165 OMA:VSRIEIR
ProtClustDB:PRK08188 InterPro:IPR026459 TIGRFAMs:TIGR04170
EMBL:M31530 PIR:D65047 RefSeq:NP_417161.1 RefSeq:YP_490890.1
ProteinModelPortal:P39452 SMR:P39452 DIP:DIP-359N IntAct:P39452
PRIDE:P39452 EnsemblBacteria:EBESCT00000003305
EnsemblBacteria:EBESCT00000016977 GeneID:12930227 GeneID:947155
KEGG:ecj:Y75_p2618 KEGG:eco:b2675 PATRIC:32120740 EchoBASE:EB4158
EcoGene:EG20257 BioCyc:EcoCyc:NRDE-MONOMER
BioCyc:ECOL316407:JW2650-MONOMER BioCyc:MetaCyc:NRDE-MONOMER
Genevestigator:P39452 Uniprot:P39452
Length = 714
Score = 425 (154.7 bits), Expect = 6.2e-37, P = 6.2e-37
Identities = 153/528 (28%), Positives = 238/528 (45%)
Query: 154 SYLLK-MDS-RVVERPQHMLMRVSVGIHKDDTDSALKTYHLMSQHWFTHATPTLFNAGTP 211
SY LK D R +E + V++ + + D AL+ M F ATPT N G
Sbjct: 111 SYTLKTFDGKRYLEDFADRVTMVALTLAQGDETLALQLTDEMLSGRFQPATPTFLNCGKQ 170
Query: 212 QP-QLSSCFLLCMKDDSIEGIYDTLKKCAIISKSAGGIGLSIHNIRASGSYIHGTNGSSN 270
Q +L SCFLL + +D++E I + +SK GG+ + N+R +G+ I S+
Sbjct: 171 QRGELVSCFLLRI-EDNMESIGRAVNSALQLSKRGGGVAFLLSNLREAGAPIKRIENQSS 229
Query: 271 GIVPMLQVFNDTARYVDQGGGKRKGAFAIYLEPWHADIFEFLDLRKNQGKEECRARDLFY 330
G++P++++ D Y +Q G R+GA A+YL H DI FLD ++ E+ R + L
Sbjct: 230 GVIPVMKMLEDAFSYANQLGA-RQGAGAVYLHAHHPDILRFLDTKRENADEKIRIKTLSL 288
Query: 331 ALWVPDLFMERVRDDGKWSLFCPSDASGLADSWGIEFEHL-YSQ-YEE----EGRAKMVI 384
+ +PD+ +++ + +LF P D + +G F + SQ Y+E E K +
Sbjct: 289 GVVIPDITFHLAKENAQMALFSPYDVERV---YGKPFADVAISQHYDELVADERIRKKYL 345
Query: 385 SARKLWFEILNSQIETGTPYMLFKDSCNRKSNQQNLGTIKSSNLCTEIVEFSSPEETAVC 444
+AR + + Q E+G PY++++D+ NR + G I SNLC+EI++ +S E
Sbjct: 346 NARDFFQRLAEIQFESGYPYIMYEDTVNRAN--PIAGRINMSNLCSEILQVNSASEYDE- 402
Query: 445 NLASIALPRYVREKGVPVQSNVSKL--VGSRDSKNRLFDFERLAEVTKIITENLNKIIDV 502
NL Y R G + N+ L + DS DF R E L + D+
Sbjct: 403 NLD------YTRT-GHDISCNLGSLNIAHTMDSP----DFARTVETA---VRGLTAVSDM 448
Query: 503 NHY-PIETTRRSNLRHRPIGIGIQGLADTFILLGLPFESPEAQQLNKDIFETIYYHALKA 561
+H + + N IG+G L G+ + SPEA F I +HAL+
Sbjct: 449 SHIRSVPSIEAGNAASHAIGLGQMNLHGYLAREGIAYGSPEALDFTNLYFYAITWHALRT 508
Query: 562 SAELAVKDGPYETYFGSPMSK---G-----ILQVDMWN--------------ITPSDRWD 599
S LA + G ET+ G S+ G LQ + W IT R
Sbjct: 509 SMLLARERG--ETFAGFKQSRYASGEYFSQYLQGN-WQPKTAKVGELFTRSGITLPTREM 565
Query: 600 WSSLREMISKNGVRNSLLVAPMPTASTSQILGNNECFEPYTSNIYTRR 647
W+ LR+ + + G+ N L A PT S S I P + + R+
Sbjct: 566 WAQLRDDVMRYGIYNQNLQAVPPTGSISYINHATSSIHPIVAKVEIRK 613
Score = 160 (61.4 bits), Expect = 7.1e-08, P = 7.1e-08
Identities = 70/296 (23%), Positives = 123/296 (41%)
Query: 481 DFERLAEVTKIITENLNKIIDVNHY-PIETTRRSNLRHRPIGIGIQGLADTFILLGLPFE 539
DF R E L + D++H + + N IG+G L G+ +
Sbjct: 430 DFARTVETA---VRGLTAVSDMSHIRSVPSIEAGNAASHAIGLGQMNLHGYLAREGIAYG 486
Query: 540 SPEAQQLNKDIFETIYYHALKASAELAVKDGPYETYFGSPMSKGILQVDMWNITPSDRWD 599
SPEA F I +HAL+ S LA + G ET+ G S+ + ++ W
Sbjct: 487 SPEALDFTNLYFYAITWHALRTSMLLARERG--ETFAGFKQSR-YASGEYFSQYLQGNWQ 543
Query: 600 WSSLR--EMISKNGVRNSLLVAPMPTAST-SQILGNNECFEPYTSNIYTRRVLSGEFIVV 656
+ + E+ +++G+ +PT +Q+ + + Y N+ +G +
Sbjct: 544 PKTAKVGELFTRSGIT-------LPTREMWAQLRDDVMRYGIYNQNLQAVPP-TGSISYI 595
Query: 657 NKHLLKDLTELGLWSHALKTKI-IYENGSVSKISE----IPEELKAIYKTVWEIKQKTLV 711
N H + H + K+ I + G ++ + E A+Y+ +EI + ++
Sbjct: 596 N-HATSSI-------HPIVAKVEIRKEGKTGRVYYPAPFMTNENLALYQDAYEIGAEKII 647
Query: 712 DMAADRGCYIDQSQSLNIHMEQPDHGKLTSLH---FYAWSKGMKTGMYYLRTRAAA 764
D A+ ++DQ SL + PD ++ YAW KG+KT +YY+R R A
Sbjct: 648 DTYAEATRHVDQGLSLTLFF--PDTATTRDINKAQIYAWRKGIKT-LYYIRLRQMA 700
>TIGR_CMR|DET_0345 [details] [associations]
symbol:DET_0345 "ribonucleotide reductase" species:243164
"Dehalococcoides ethenogenes 195" [GO:0004748
"ribonucleoside-diphosphate reductase activity, thioredoxin
disulfide as acceptor" evidence=ISS] [GO:0009265
"2'-deoxyribonucleotide biosynthetic process" evidence=ISS]
InterPro:IPR000788 InterPro:IPR008926 InterPro:IPR013344
InterPro:IPR013509 Pfam:PF00317 Pfam:PF02867 PRINTS:PR01183
UniPathway:UPA00326 GO:GO:0005524 GO:GO:0006260 EMBL:CP000027
GenomeReviews:CP000027_GR GO:GO:0031419 eggNOG:COG0209
HOGENOM:HOG000229277 KO:K00525 GO:GO:0005971 GO:GO:0004748
SUPFAM:SSF48168 TIGRFAMs:TIGR02504 InterPro:IPR024434 Pfam:PF12637
OMA:IFDAVKH RefSeq:YP_181092.1 ProteinModelPortal:Q3Z9K7
STRING:Q3Z9K7 GeneID:3230364 KEGG:det:DET0345 PATRIC:21607759
ProtClustDB:PRK08665 BioCyc:DETH243164:GJNF-345-MONOMER
Uniprot:Q3Z9K7
Length = 761
Score = 232 (86.7 bits), Expect = 3.3e-34, Sum P(3) = 3.3e-34
Identities = 71/213 (33%), Positives = 106/213 (49%)
Query: 151 LERSYLLK-MDSRVVERPQHMLMRVS----VG--IHKDDTDSALKT---YHLMSQHWFTH 200
LER YL K + E + M RV+ +G I+ D + Y++M++ F
Sbjct: 30 LERRYLKKDKQGKPSETVEDMFRRVARTIAMGELIYNPKADVRSREDEFYNIMTRLEFLP 89
Query: 201 ATPTLFNAGTPQPQLSSCFLLCMKDDSIEGIYDTLKKCAIISKSAGGIGLSIHNIRASGS 260
+PTL NAG QLS+CF+L + DDSIE I+D +K A+I KS GG G S +R
Sbjct: 90 NSPTLMNAGRELGQLSACFVLPV-DDSIESIFDAVKHTAMIHKSGGGTGFSFSRLRPEQD 148
Query: 261 YIHGTNGSSNGIVPMLQVFNDTARYVDQGGGKRKGAFAIYLEPWHADIFEFLDLRKNQGK 320
+ T G ++G V ++ F D A V + GG R+GA L H DI +F+ + G
Sbjct: 149 RVGTTGGVASGPVSFMRAF-DVATDVIKQGGTRRGANMAILSIDHPDIMKFIHAKDKAGV 207
Query: 321 EECRARDLFYALWVPDLFMERVRDDGKWSLFCP 353
+ ++ + D FM+ V+D + L P
Sbjct: 208 ----LTNFNLSVAITDKFMQAVKDGVDYDLLNP 236
Score = 170 (64.9 bits), Expect = 3.3e-34, Sum P(3) = 3.3e-34
Identities = 38/118 (32%), Positives = 65/118 (55%)
Query: 465 NVSKLVGSRDSKNRLFDFERLAEVTKIITENLNKIIDVNHYPIETTRRSNLRHRPIGIGI 524
N+S++V + + D+++L+ V K L+ +IDVN +P+ + R IG+G+
Sbjct: 307 NLSRMV-TVSGGQAVVDYKKLSRVVKSAVRFLDNVIDVNKFPLPQIEEMTKKSRKIGLGV 365
Query: 525 QGLADTFILLGLPFESPEAQQLNKDIFETIYYHALKASAELAVKDGPYETYFGSPMSK 582
G AD + LG+P+ S + +L ++I + A K S+ELAV+ G + Y GS K
Sbjct: 366 MGFADMLLELGIPYNSENSIKLAEEIMCFVNEEAHKFSSELAVERGVFPAYRGSIYEK 423
Score = 103 (41.3 bits), Expect = 3.3e-34, Sum P(3) = 3.3e-34
Identities = 42/162 (25%), Positives = 78/162 (48%)
Query: 609 KNG--VRNSLLVAPMPTASTSQILGNNECFEPYTSNIYTRRVLSG-EFIVVNKHLLKDLT 665
K+G +RN+ PT + S I G + EP+ + +TR +L G + I VN + +
Sbjct: 423 KSGRPMRNASCTTIAPTGTLSIIAGCSSGIEPHFALCFTRNILDGTKMIEVNPYFERAAK 482
Query: 666 ELGLWSHALKTKIIYENGSVSKISEIPEELKAIYKTVWEIKQKTLVDM-AADRGCYIDQ- 723
E G +S L K + E + + +++P E K ++ T +I + V + AA + C +
Sbjct: 483 EGGYYSEEL-IKSLAEGAHLDE-ADVPAEAKELFVTAHQIVPEWHVRIQAAFQKCTDNAV 540
Query: 724 SQSLNIHMEQPDHGKLTSLHFYAWSKGMKTGMYYLRTRAAAD 765
S+++N E + G + ++ A +K G+ R + D
Sbjct: 541 SKTVNFSREAVE-GDVAEVYKMAHDSNLK-GITIYRDGSRED 580
Score = 96 (38.9 bits), Expect = 1.5e-26, Sum P(3) = 1.5e-26
Identities = 36/127 (28%), Positives = 62/127 (48%)
Query: 364 GIEFEHLYSQYEEEGRAKMVISARKLWFEILNSQIETGTPYMLFKDSCNRKSNQQNLGTI 423
G++++ L G ++A +++ +I++ +TG P ++F D N + LG I
Sbjct: 228 GVDYDLLNPH---NGEVVSRLNATEVFNKIVHMAWKTGDPGIVFIDRINAYNPTPQLGRI 284
Query: 424 KSSNLCTEIVEFSSPEETAVCNLASIALPRYVREKGVPVQSNVSKLVGSRDSKNRLFDFE 483
+S+N C E + P E+ CNL SI L R V G + KL SR K+ + +
Sbjct: 285 ESTNPCGE--QPLLPYES--CNLGSINLSRMVTVSGGQAVVDYKKL--SRVVKSAVRFLD 338
Query: 484 RLAEVTK 490
+ +V K
Sbjct: 339 NVIDVNK 345
>TIGR_CMR|SPO_3194 [details] [associations]
symbol:SPO_3194 "ribonucleoside-diphosphate reductase,
putative" species:246200 "Ruegeria pomeroyi DSS-3" [GO:0004748
"ribonucleoside-diphosphate reductase activity, thioredoxin
disulfide as acceptor" evidence=ISS] [GO:0009263
"deoxyribonucleotide biosynthetic process" evidence=ISS]
InterPro:IPR000788 InterPro:IPR013344 InterPro:IPR013509
Pfam:PF00317 Pfam:PF02867 PRINTS:PR01183 UniPathway:UPA00326
GO:GO:0005524 EMBL:CP000031 GenomeReviews:CP000031_GR GO:GO:0006260
GO:GO:0031419 KO:K00525 OMA:QMATFDI GO:GO:0005971 GO:GO:0004748
TIGRFAMs:TIGR02504 InterPro:IPR024434 Pfam:PF12637
HOGENOM:HOG000229278 RefSeq:YP_168397.1 ProteinModelPortal:Q5LNK9
GeneID:3192944 KEGG:sil:SPO3194 PATRIC:23379835
ProtClustDB:CLSK934086 Uniprot:Q5LNK9
Length = 760
Score = 185 (70.2 bits), Expect = 7.7e-29, Sum P(4) = 7.7e-29
Identities = 53/187 (28%), Positives = 89/187 (47%)
Query: 465 NVSKLVGSRDSKNRLFDFERLAEVTKIITENLNKIIDVNHYPIETTRRSNLRHRPIGIGI 524
N+++LV + D E L ++ ++ ++D + +P+ R IG+G+
Sbjct: 285 NLARLVSNPFEDAAELDPEALQKLVATAVRMMDNVVDASRFPLPEQAAEAQNKRRIGLGV 344
Query: 525 QGLADTFILLGLPFESPEAQQLNKDIFETIYYHALKASAELAVKDGPYETYFGSP-MSKG 583
GLAD ++LGL + S EA + +D I A AS ELA + G + + ++ G
Sbjct: 345 TGLADALLMLGLRYGSDEAAKQTEDWLHAIARAAYLASVELAKEKGAFPLFDAEKYLASG 404
Query: 584 ILQVDMWNITPSDRWDWSSLREMISKNGVRNSLLVAPMPTASTSQILGN-NECFEPYTSN 642
++ D +RE I +G+RN+LL + PT + S GN + EP +
Sbjct: 405 TMRA----------MD-EDVREAIRTHGIRNALLTSIAPTGTISLYAGNVSSGIEPVFAY 453
Query: 643 IYTRRVL 649
YTR+VL
Sbjct: 454 AYTRKVL 460
Score = 182 (69.1 bits), Expect = 7.7e-29, Sum P(4) = 7.7e-29
Identities = 45/144 (31%), Positives = 72/144 (50%)
Query: 208 AGTP-QPQLSSCFLLCMKDDSIEGIYDTLKKCAIISKSAGGIGLSIHNIRASGSYIHGTN 266
AGT Q L +CF++ DS+ GI++ LK+ A+ + GGIG IR G+ + G
Sbjct: 75 AGTARQVTLFNCFVMGTIPDSMGGIFEMLKEAALTMQQGGGIGYDFSTIRPRGADVKGVA 134
Query: 267 GSSNGIVPMLQVFNDTARYVDQGGGKRKGAFAIYLEPWHADIFEFLDLRKNQGKEECRAR 326
++G + + V++ R + G R+GA + H DI +F+ + + R R
Sbjct: 135 ADASGPLSFMDVWDAMCRTI-MSAGSRRGAMMATMRCDHPDIEQFIGAKS----DPARLR 189
Query: 327 DLFYALWVPDLFMERVRDDGKWSL 350
++ V D FME V+ DG W L
Sbjct: 190 MFNMSVLVTDAFMEAVKADGSWEL 213
Score = 83 (34.3 bits), Expect = 7.7e-29, Sum P(4) = 7.7e-29
Identities = 24/79 (30%), Positives = 38/79 (48%)
Query: 377 EGRAKMVISARKLWFEILNSQIETGTPYMLFKDSCNRKSNQQNLGTIKSSNLCTEIVEFS 436
+G+ + AR LW +I+ + + P ++F D N +N + TI ++N C E
Sbjct: 216 DGKVYHTVEARTLWNKIMQATYDYAEPGVIFIDRINAANNLNYVETIAATNPCGEQ---P 272
Query: 437 SPEETAVCNLASIALPRYV 455
P A C L S+ L R V
Sbjct: 273 LPPYGA-CLLGSVNLARLV 290
Score = 49 (22.3 bits), Expect = 7.7e-29, Sum P(4) = 7.7e-29
Identities = 18/59 (30%), Positives = 29/59 (49%)
Query: 670 WSHALKTKI--IYENGSVSKISEIPEELKAIYKT---VWEIKQKTLVDMAADRGCYIDQ 723
W+ AL I ++ G +S + EELKA++ W +K K + + A G I+Q
Sbjct: 645 WTLALTRMISAVFRRGG--DVSFVVEELKAVFDPRGGAW-VKGKYIPSILAAIGGVIEQ 700
>UNIPROTKB|Q0C1X7 [details] [associations]
symbol:HNE_1555 "Ribonucleoside-diphosphate reductase"
species:228405 "Hyphomonas neptunium ATCC 15444" [GO:0009265
"2'-deoxyribonucleotide biosynthetic process" evidence=ISS]
InterPro:IPR000788 InterPro:IPR013344 InterPro:IPR013509
Pfam:PF00317 Pfam:PF02867 PRINTS:PR01183 UniPathway:UPA00326
GO:GO:0005524 GO:GO:0006260 EMBL:CP000158 GenomeReviews:CP000158_GR
GO:GO:0031419 GO:GO:0009265 eggNOG:COG0209 KO:K00525 OMA:QMATFDI
GO:GO:0005971 GO:GO:0004748 TIGRFAMs:TIGR02504 InterPro:IPR024434
Pfam:PF12637 RefSeq:YP_760266.1 STRING:Q0C1X7 GeneID:4287134
KEGG:hne:HNE_1555 PATRIC:32215933 HOGENOM:HOG000229278
ProtClustDB:CLSK2780972 BioCyc:HNEP228405:GI69-1588-MONOMER
Uniprot:Q0C1X7
Length = 731
Score = 199 (75.1 bits), Expect = 1.6e-27, Sum P(3) = 1.6e-27
Identities = 63/188 (33%), Positives = 95/188 (50%)
Query: 465 NVSKLVGS---RDSKNRLFDFERLAEVTKIITENLNKIIDVNHYPIETTRRSNLRHRPIG 521
N+++LV S D+K L + E L E T I L+ +ID++ YP+E R +G
Sbjct: 284 NLARLVSSPFEADAKIELTELETLTE-TAI--RFLDNVIDISRYPLEQQGEEARAKRRLG 340
Query: 522 IGIQGLADTFILLGLPFESPEAQQLNKDIFETIYYHALKASAELAVKDGPYETYFGSPMS 581
+G+ GLAD I G + S +A L++ I A +ASA LA + GPY +
Sbjct: 341 LGVTGLADALIFCGAAYGSDKAVALSERWMGAIKRAAYRASAHLAAEKGPYPLF-----D 395
Query: 582 KGILQVDMWNITPSDRWDWSSLREMISKNGVRNSLLVAPMPTASTSQILGN-NECFEPYT 640
K IL D N+ D R +IS++G+RN L + PT +TS + N + EP
Sbjct: 396 KAIL--DRPNLLGLD----PDTRALISEHGLRNGCLTSIAPTGTTSLLADNVSSGVEPVF 449
Query: 641 SNIYTRRV 648
+ Y+R+V
Sbjct: 450 AFSYSRKV 457
Score = 163 (62.4 bits), Expect = 1.6e-27, Sum P(3) = 1.6e-27
Identities = 51/205 (24%), Positives = 94/205 (45%)
Query: 152 ERSYLLKMDSRVVERPQHMLMRVSVGIHKDDTDSALKTYHL-----MSQHWFTHATPTLF 206
E+ Y + D L RV+ + K + + K + ++ F A L
Sbjct: 13 EKKYRFRSDEGEDVDLAATLSRVANAVAKAENPANRKVWRARFRDALTDFRFIPAGRILA 72
Query: 207 NAGTPQP-QLSSCFLLCMKDDSIEGIYDTLKKCAIISKSAGGIGLSIHNIRASGSYIHGT 265
AGT + L +CF++ D++ GI++ L++ A+ + GG+G+ IR SG+ + G
Sbjct: 73 GAGTARNVTLFNCFVMGTLPDNLPGIFEHLREAAVTLQQGGGVGMDFSTIRPSGAPVMGV 132
Query: 266 NGSSNGIVPMLQVFNDTARYVDQGGGKRKGAFAIYLEPWHADIFEFLDLRKNQGKEECRA 325
++G + + ++ R + G+R+GA L H DI F+D +++ G R
Sbjct: 133 GAQASGPLSFMDTWDAMCRTI-MSAGQRRGAMMGCLRIDHPDIEAFIDAKRD-G---ARF 187
Query: 326 RDLFYALWVPDLFMERVRDDGKWSL 350
R+ ++ V D FM + W+L
Sbjct: 188 RNFNLSVLVTDEFMAALEAGRDWTL 212
Score = 80 (33.2 bits), Expect = 1.6e-27, Sum P(3) = 1.6e-27
Identities = 23/78 (29%), Positives = 36/78 (46%)
Query: 378 GRAKMVISARKLWFEILNSQIETGTPYMLFKDSCNRKSNQQNLGTIKSSNLCTEIVEFSS 437
G+ + A LW ++ + + P ++F D N +N ++ TI +SN C E +
Sbjct: 216 GQPYRSLPASGLWDRLMQATYDAAEPGVIFVDRVNALNNLADIETISASNPCGE--QMLP 273
Query: 438 PEETAVCNLASIALPRYV 455
P C L SI L R V
Sbjct: 274 PY--GACLLGSINLARLV 289
>UNIPROTKB|O53767 [details] [associations]
symbol:nrdZ "Ribonucleoside-diphosphate reductase NrdZ"
species:1773 "Mycobacterium tuberculosis" [GO:0005618 "cell wall"
evidence=IDA] [GO:0005829 "cytosol" evidence=IDA] [GO:0005886
"plasma membrane" evidence=IDA] InterPro:IPR000788
InterPro:IPR008926 InterPro:IPR013344 InterPro:IPR013509
Pfam:PF00317 Pfam:PF02867 PRINTS:PR01183 PROSITE:PS00089
UniPathway:UPA00326 Pfam:PF03477 GO:GO:0005829 GO:GO:0005886
GO:GO:0005524 GO:GO:0005618 EMBL:AE000516 GenomeReviews:AE000516_GR
GenomeReviews:AL123456_GR GO:GO:0006260 EMBL:BX842573 GO:GO:0031419
InterPro:IPR005144 PROSITE:PS51161 PIR:A70933 RefSeq:NP_215084.1
RefSeq:NP_335005.1 RefSeq:YP_006513903.1 ProteinModelPortal:O53767
SMR:O53767 PRIDE:O53767 EnsemblBacteria:EBMYCT00000000981
EnsemblBacteria:EBMYCT00000071101 GeneID:13318445 GeneID:887666
GeneID:924988 KEGG:mtc:MT0596 KEGG:mtu:Rv0570 KEGG:mtv:RVBD_0570
PATRIC:18123012 TubercuList:Rv0570 eggNOG:COG0209
HOGENOM:HOG000229277 KO:K00525 OMA:QMATFDI ProtClustDB:CLSK790600
GO:GO:0005971 GO:GO:0004748 SUPFAM:SSF48168 TIGRFAMs:TIGR02504
Uniprot:O53767
Length = 692
Score = 194 (73.4 bits), Expect = 1.1e-26, Sum P(3) = 1.1e-26
Identities = 49/156 (31%), Positives = 85/156 (54%)
Query: 198 FTHATPTLFNAGTPQPQLSSCFLLCMKDDSIEGIYDTLKKCAIISKSAGGIGLSIHNIRA 257
F +PTL N+GT L+ CF+L + +DS++ I+ TL + A + ++ GG G + ++R
Sbjct: 173 FLPNSPTLMNSGTDLGLLAGCFVLPI-EDSLQSIFATLGQAAELQRAGGGTGYAFSHLRP 231
Query: 258 SGSYIHGTNGSSNGIVPMLQVFNDTARYVDQGGGKRKGAFAIYLEPWHADIFEFLDLRKN 317
+G + T G+++G V L++++ A V GG +R+GA L+ H DI +F+ K
Sbjct: 232 AGDRVASTGGTASGPVSFLRLYDSAAGVVSMGG-RRRGACMAVLDVSHPDICDFVTA-KA 289
Query: 318 QGKEECRARDLFYALWVPDLFMERVRDDGKWSLFCP 353
+ E +L ++ V D F+ V +G L P
Sbjct: 290 ESPSELPHFNL--SVGVTDAFLRAVERNGLHRLVNP 323
Score = 147 (56.8 bits), Expect = 1.1e-26, Sum P(3) = 1.1e-26
Identities = 37/124 (29%), Positives = 63/124 (50%)
Query: 460 VPVQS-NVSKLVGSRDSKNRLFDFERLAEVTKIITENLNKIIDVNHYPIETTRRSNLRHR 518
+P +S N+ + +R + D++RL EV + L+ +IDV+ YP + R
Sbjct: 383 LPYESCNLGSINLARMLADGRVDWDRLEEVAGVAVRFLDDVIDVSRYPFPELGEAARATR 442
Query: 519 PIGIGIQGLADTFILLGLPFESPEAQQLNKDIFETIYYHALKASAELAVKDGPYETYFGS 578
IG+G+ GLA+ LG+P++S EA +L + I A AS LA + G + + S
Sbjct: 443 KIGLGVMGLAELLAALGIPYDSEEAVRLATRLMRRIQQAAHTASRRLAEERGAFPAFTDS 502
Query: 579 PMSK 582
++
Sbjct: 503 RFAR 506
Score = 92 (37.4 bits), Expect = 1.1e-26, Sum P(3) = 1.1e-26
Identities = 30/141 (21%), Positives = 62/141 (43%)
Query: 613 RNSLLVAPMPTASTSQILGNNECFEPYTSNIYTRRVLSGEFIVVNKHLLKDLTELGLWSH 672
RN+ + + PT + S I G EP + +TR ++ + VN + + G +
Sbjct: 511 RNAQVTSVAPTGTISLIAGTTAGIEPMFAIAFTRAIVGRHLLEVNPCFDRLARDRGFYRD 570
Query: 673 ALKTKIIYENGSVSKISEIPEELKAIYKTVWEIKQKTLVDMAADRGCYIDQSQSLNIHME 732
L +I + G V +P E++A + T EI + + M A +++ + S +++
Sbjct: 571 ELIAEIA-QRGGVRGYPRLPAEVRAAFPTAAEIAPQWHLRMQAAVQRHVEAAVSKTVNLP 629
Query: 733 QPDH-GKLTSLHFYAWSKGMK 752
+ +++ AW +K
Sbjct: 630 ATATVDDVRAIYVAAWKAKVK 650
Score = 77 (32.2 bits), Expect = 1.9e-19, Sum P(3) = 1.9e-19
Identities = 24/80 (30%), Positives = 40/80 (50%)
Query: 378 GRAKMVISARKLWFEILNSQIETGTPYMLFKDSCNRKSNQQNLGTIKSSNLCTEIVEFSS 437
G+ + A +L+ I + G P ++F D+ NR + G I+++N C E+
Sbjct: 326 GKIVARMPAAELFDAICKAAHAGGDPGLVFLDTINRANPVPGRGRIEATNPCGEVPLL-- 383
Query: 438 PEETAVCNLASIALPRYVRE 457
P E+ CNL SI L R + +
Sbjct: 384 PYES--CNLGSINLARMLAD 401
>UNIPROTKB|E9PP77 [details] [associations]
symbol:RRM1 "Ribonucleoside-diphosphate reductase large
subunit" species:9606 "Homo sapiens" [GO:0004748
"ribonucleoside-diphosphate reductase activity, thioredoxin
disulfide as acceptor" evidence=IEA] [GO:0005971
"ribonucleoside-diphosphate reductase complex" evidence=IEA]
[GO:0006260 "DNA replication" evidence=IEA] InterPro:IPR000788
Pfam:PF02867 GO:GO:0006260 GO:GO:0005971 GO:GO:0004748
HGNC:HGNC:10451 ChiTaRS:RRM1 EMBL:AC015689 IPI:IPI00976088
ProteinModelPortal:E9PP77 SMR:E9PP77 Ensembl:ENST00000533495
ArrayExpress:E9PP77 Bgee:E9PP77 Uniprot:E9PP77
Length = 75
Score = 295 (108.9 bits), Expect = 4.8e-25, P = 4.8e-25
Identities = 55/70 (78%), Positives = 66/70 (94%)
Query: 223 MKDDSIEGIYDTLKKCAIISKSAGGIGLSIHNIRASGSYIHGTNGSSNGIVPMLQVFNDT 282
MKDDSIEGIYDTLK+CA+ISKSAGGIG+++ IRA+GSYI GTNG+SNG+VPML+V+N+T
Sbjct: 1 MKDDSIEGIYDTLKQCALISKSAGGIGVAVSCIRATGSYIAGTNGNSNGLVPMLRVYNNT 60
Query: 283 ARYVDQGGGK 292
ARYVDQGG K
Sbjct: 61 ARYVDQGGNK 70
>TIGR_CMR|DET_0244 [details] [associations]
symbol:DET_0244 "ribonucleotide reductase" species:243164
"Dehalococcoides ethenogenes 195" [GO:0004748
"ribonucleoside-diphosphate reductase activity, thioredoxin
disulfide as acceptor" evidence=ISS] [GO:0009265
"2'-deoxyribonucleotide biosynthetic process" evidence=ISS]
InterPro:IPR000788 InterPro:IPR008926 InterPro:IPR013344
InterPro:IPR013509 Pfam:PF00317 Pfam:PF02867 PRINTS:PR01183
UniPathway:UPA00326 GO:GO:0005524 GO:GO:0006260 EMBL:CP000027
GenomeReviews:CP000027_GR GO:GO:0031419 eggNOG:COG0209
HOGENOM:HOG000229277 KO:K00525 GO:GO:0005971 GO:GO:0004748
SUPFAM:SSF48168 TIGRFAMs:TIGR02504 RefSeq:YP_180992.1
ProteinModelPortal:Q3Z9V7 STRING:Q3Z9V7 GeneID:3230414
KEGG:det:DET0244 PATRIC:21607559 OMA:SANFGIN ProtClustDB:CLSK741634
BioCyc:DETH243164:GJNF-244-MONOMER Uniprot:Q3Z9V7
Length = 585
Score = 157 (60.3 bits), Expect = 9.7e-24, Sum P(4) = 9.7e-24
Identities = 59/213 (27%), Positives = 95/213 (44%)
Query: 151 LERSYLLKM-DSRVVERPQHMLMRVSVGIHKDDTD---------SALKTYHLMSQHWFTH 200
LE+ YL + D + E + M RV+ + + A + Y +M+ F
Sbjct: 11 LEKRYLKRDGDGNIAESSEDMFRRVADTVAAAENAYNPPGKAACMAEEFYGMMTGFEFLP 70
Query: 201 ATPTLFNAGTPQPQLSSCFLLCMKDDSIEGIYDTLKKCAIISKSAGGIGLSIHNIRASGS 260
+PTL NAG LSSCF+L + D S+ GI + + +I + GG G + IR
Sbjct: 71 NSPTLLNAGRELGLLSSCFVLPVAD-SVAGIAKAVGEAMVIHQYGGGTGFAFDAIRPEDD 129
Query: 261 YIHGTNGSSNGIVPMLQVFNDTARYVDQGGGKRKGAFAIYLEPWHADIFEFLDLRKNQGK 320
+ + + G V ++ VF++ Y+ Q G R G + L H DI +F+ K++G
Sbjct: 130 PVKSGHKVAGGPVRLVGVFSEAVNYIKQAG-VRCGCNSASLPVNHPDILKFIRA-KDEGS 187
Query: 321 EECRARDLFYALWVPDLFMERVRDDGKWSLFCP 353
+ AL D F+ +VR + L P
Sbjct: 188 HSANF-GINIAL--TDDFIRKVRRGEDYELVNP 217
Score = 127 (49.8 bits), Expect = 9.7e-24, Sum P(4) = 9.7e-24
Identities = 28/98 (28%), Positives = 50/98 (51%)
Query: 481 DFERLAEVTKIITENLNKIIDVNHYPIETTRRSNLRHRPIGIGIQGLADTFILLGLPFES 540
D+ RL + L+ +++VN YP ++ R IG+G G A+ I LG+ ++S
Sbjct: 303 DYPRLGGLIAKAVRFLDDVLEVNRYPSAEVEKAARATRKIGLGFMGFAEMLIKLGIRYDS 362
Query: 541 PEAQQLNKDIFETIYYHALKASAELAVKDGPYETYFGS 578
EA ++ + A +A+ ELA++ G + + GS
Sbjct: 363 AEAVSAADELMAFVKEAACQATEELALERGAFPAFAGS 400
Score = 88 (36.0 bits), Expect = 9.7e-24, Sum P(4) = 9.7e-24
Identities = 31/119 (26%), Positives = 55/119 (46%)
Query: 613 RNSLLVAPMPTASTSQILGNNECFEPYTSNIYTRRVLSGEFIVVNKHLLKDLT-ELGLWS 671
RN+ + T +TS I + P S + R +L G+ ++ H ++ E G +S
Sbjct: 411 RNATCLTFTNTGTTSIIADTSVGIHPIYSLVMVRNILDGQRLLDINHAFEETARERGFFS 470
Query: 672 HALKTKIIYENGSVSKISEIPEELKAIYKTVWEIKQKTLVDMAADRGCYIDQ--SQSLN 728
AL K++ S EIPE+ + + T +I+ + + + A Y D SQ++N
Sbjct: 471 PALIEKLL-TGESPCNCPEIPEDYRRLLVTARDIQPEWCIRVQAAFQKYTDNAISQTVN 528
Score = 73 (30.8 bits), Expect = 9.7e-24, Sum P(4) = 9.7e-24
Identities = 16/52 (30%), Positives = 28/52 (53%)
Query: 378 GRAKMVISARKLWFEILNSQIETGTPYMLFKDSCNRKSNQQNLGTIKSSNLC 429
GR +SA ++++ I S ETG P ++F D N+ + LG +++ C
Sbjct: 220 GRVSGSLSAAEVFYRIARSSWETGDPGIMFIDRINKDNPTPRLGEFITTDPC 271
Score = 43 (20.2 bits), Expect = 1.2e-08, Sum P(3) = 1.2e-08
Identities = 25/111 (22%), Positives = 46/111 (41%)
Query: 35 DPVLVAQKVCAGVYK--GVTTTQLDELAAE------TAAAMTVNHPDYALL------AGR 80
DPV KV G + GV + ++ + +A++ VNHPD
Sbjct: 129 DPVKSGHKVAGGPVRLVGVFSEAVNYIKQAGVRCGCNSASLPVNHPDILKFIRAKDEGSH 188
Query: 81 VAVSNLHKITKNSFSETIK--DMYNYYNKRSGK-KASLVADDVYEIIMKNA 128
A ++ + F ++ + Y N R+G+ SL A +V+ I +++
Sbjct: 189 SANFGINIALTDDFIRKVRRGEDYELVNPRTGRVSGSLSAAEVFYRIARSS 239
>UNIPROTKB|Q5LRJ1 [details] [associations]
symbol:nrdJ "Ribonucleoside-diphosphate reductase,
adenosylcobalamin-dependent" species:246200 "Ruegeria pomeroyi
DSS-3" [GO:0009263 "deoxyribonucleotide biosynthetic process"
evidence=ISS] InterPro:IPR000788 InterPro:IPR013344
InterPro:IPR013678 Pfam:PF02867 Pfam:PF08471 GO:GO:0000166
EMBL:CP000031 GenomeReviews:CP000031_GR GO:GO:0006260 GO:GO:0050897
GO:GO:0031419 GO:GO:0009263 KO:K00525 GO:GO:0005971 GO:GO:0004748
TIGRFAMs:TIGR02504 Gene3D:1.10.10.200 InterPro:IPR017856
InterPro:IPR024434 Pfam:PF12637 RefSeq:YP_167364.1
ProteinModelPortal:Q5LRJ1 GeneID:3192806 KEGG:sil:SPO2136
PATRIC:23377617 HOGENOM:HOG000021770 OMA:FLWRSVP
ProtClustDB:PRK07562 Uniprot:Q5LRJ1
Length = 1214
Score = 128 (50.1 bits), Expect = 7.4e-12, Sum P(4) = 7.4e-12
Identities = 33/121 (27%), Positives = 60/121 (49%)
Query: 196 HWFTHATPTLFNAGTP--QPQLSSCFLLCMKDDSIE--GIYDTLKKCAIISKSAGGIGLS 251
H+ + T L + + PQ +CF+ + DD + GI D + A + K G G +
Sbjct: 167 HYVDYKTGKLTKSDSAYEHPQPHACFIQSVSDDLVNEGGIMDLWVREARLFKYGSGTGTN 226
Query: 252 IHNIRASGSYIHGTNGSSNGIVPMLQVFNDTARYVDQGGGKRKGAFAIYLEPWHADIFEF 311
++RA G + G G S+G++ L++ + A + GG R+ A + ++ H DI +F
Sbjct: 227 FSHLRAEGESLSG-GGKSSGLMGFLKIGDRAAGAIKSGGTTRRAAKMVIVDADHPDIEQF 285
Query: 312 L 312
+
Sbjct: 286 I 286
Score = 83 (34.3 bits), Expect = 7.4e-12, Sum P(4) = 7.4e-12
Identities = 23/80 (28%), Positives = 41/80 (51%)
Query: 378 GRAKMVISARKLWFEILNSQIETGTPYMLFKDSCNRKSNQQNLGTIKSSNLCTEIVEFSS 437
G+ + AR LW ++ ++ P + F D+ N G I+ SN C+E +
Sbjct: 417 GKVAKTVKARDLWEKVGHAAWACADPGIQFHDTVNDWHTCPADGPIRGSNPCSEYMFL-- 474
Query: 438 PEETAVCNLASIALPRYVRE 457
++TA CNLAS+ L ++++
Sbjct: 475 -DDTA-CNLASMNLLTFLKD 492
Score = 73 (30.8 bits), Expect = 7.4e-12, Sum P(4) = 7.4e-12
Identities = 22/100 (22%), Positives = 44/100 (44%)
Query: 476 KNRLFDFERLAEVTKIITENLNKIIDVNHYPIETTRRSNLRHRPIGIGIQGLADTFILLG 535
K+ F E T++ T L + + +P + + + R +G+G + + +G
Sbjct: 491 KDGEFQAEDYIHATRLWTLTLEISVTMAQFPSKEIAQLSYDFRTLGLGYANIGGLLMNMG 550
Query: 536 LPFESPEAQQLNKDIFETIYYHALKASAELAVKDGPYETY 575
++S E + L + + A SAE+A + GP+ Y
Sbjct: 551 YGYDSDEGRALCGALTAIMTGVAYATSAEIAGELGPFAGY 590
Score = 61 (26.5 bits), Expect = 7.4e-12, Sum P(4) = 7.4e-12
Identities = 18/86 (20%), Positives = 37/86 (43%)
Query: 600 WSSLREMISKNGVRNSLLVAPMPTASTSQILG-NNECFEPYTSNIYTRRVLSGEFI-VVN 657
W + KNG RN+ PT + ++ + EP + + +++ G + ++N
Sbjct: 643 WDEALSLGEKNGYRNAQSTVIAPTGTIGLVMDCDTTGIEPDFALVKFKKLAGGGYFKIIN 702
Query: 658 KHLLKDLTELGLWSHALKTKIIYENG 683
+ + L LG S ++ + Y G
Sbjct: 703 RSVPAALENLGYSSAQIEEIVSYAVG 728
Score = 39 (18.8 bits), Expect = 1.1e-09, Sum P(4) = 1.1e-09
Identities = 8/21 (38%), Positives = 13/21 (61%)
Query: 670 WSHALKTKIIYENGSVSKISE 690
WS +K +Y +GS K+S+
Sbjct: 893 WSLGVKANALYRDGS--KLSQ 911
>TIGR_CMR|SPO_2136 [details] [associations]
symbol:SPO_2136 "ribonucleoside-diphosphate reductase,
adenosylcobalamin-dependent" species:246200 "Ruegeria pomeroyi
DSS-3" [GO:0004748 "ribonucleoside-diphosphate reductase activity,
thioredoxin disulfide as acceptor" evidence=ISS] [GO:0005971
"ribonucleoside-diphosphate reductase complex" evidence=ISS]
[GO:0009263 "deoxyribonucleotide biosynthetic process"
evidence=ISS] InterPro:IPR000788 InterPro:IPR013344
InterPro:IPR013678 Pfam:PF02867 Pfam:PF08471 GO:GO:0000166
EMBL:CP000031 GenomeReviews:CP000031_GR GO:GO:0006260 GO:GO:0050897
GO:GO:0031419 GO:GO:0009263 KO:K00525 GO:GO:0005971 GO:GO:0004748
TIGRFAMs:TIGR02504 Gene3D:1.10.10.200 InterPro:IPR017856
InterPro:IPR024434 Pfam:PF12637 RefSeq:YP_167364.1
ProteinModelPortal:Q5LRJ1 GeneID:3192806 KEGG:sil:SPO2136
PATRIC:23377617 HOGENOM:HOG000021770 OMA:FLWRSVP
ProtClustDB:PRK07562 Uniprot:Q5LRJ1
Length = 1214
Score = 128 (50.1 bits), Expect = 7.4e-12, Sum P(4) = 7.4e-12
Identities = 33/121 (27%), Positives = 60/121 (49%)
Query: 196 HWFTHATPTLFNAGTP--QPQLSSCFLLCMKDDSIE--GIYDTLKKCAIISKSAGGIGLS 251
H+ + T L + + PQ +CF+ + DD + GI D + A + K G G +
Sbjct: 167 HYVDYKTGKLTKSDSAYEHPQPHACFIQSVSDDLVNEGGIMDLWVREARLFKYGSGTGTN 226
Query: 252 IHNIRASGSYIHGTNGSSNGIVPMLQVFNDTARYVDQGGGKRKGAFAIYLEPWHADIFEF 311
++RA G + G G S+G++ L++ + A + GG R+ A + ++ H DI +F
Sbjct: 227 FSHLRAEGESLSG-GGKSSGLMGFLKIGDRAAGAIKSGGTTRRAAKMVIVDADHPDIEQF 285
Query: 312 L 312
+
Sbjct: 286 I 286
Score = 83 (34.3 bits), Expect = 7.4e-12, Sum P(4) = 7.4e-12
Identities = 23/80 (28%), Positives = 41/80 (51%)
Query: 378 GRAKMVISARKLWFEILNSQIETGTPYMLFKDSCNRKSNQQNLGTIKSSNLCTEIVEFSS 437
G+ + AR LW ++ ++ P + F D+ N G I+ SN C+E +
Sbjct: 417 GKVAKTVKARDLWEKVGHAAWACADPGIQFHDTVNDWHTCPADGPIRGSNPCSEYMFL-- 474
Query: 438 PEETAVCNLASIALPRYVRE 457
++TA CNLAS+ L ++++
Sbjct: 475 -DDTA-CNLASMNLLTFLKD 492
Score = 73 (30.8 bits), Expect = 7.4e-12, Sum P(4) = 7.4e-12
Identities = 22/100 (22%), Positives = 44/100 (44%)
Query: 476 KNRLFDFERLAEVTKIITENLNKIIDVNHYPIETTRRSNLRHRPIGIGIQGLADTFILLG 535
K+ F E T++ T L + + +P + + + R +G+G + + +G
Sbjct: 491 KDGEFQAEDYIHATRLWTLTLEISVTMAQFPSKEIAQLSYDFRTLGLGYANIGGLLMNMG 550
Query: 536 LPFESPEAQQLNKDIFETIYYHALKASAELAVKDGPYETY 575
++S E + L + + A SAE+A + GP+ Y
Sbjct: 551 YGYDSDEGRALCGALTAIMTGVAYATSAEIAGELGPFAGY 590
Score = 61 (26.5 bits), Expect = 7.4e-12, Sum P(4) = 7.4e-12
Identities = 18/86 (20%), Positives = 37/86 (43%)
Query: 600 WSSLREMISKNGVRNSLLVAPMPTASTSQILG-NNECFEPYTSNIYTRRVLSGEFI-VVN 657
W + KNG RN+ PT + ++ + EP + + +++ G + ++N
Sbjct: 643 WDEALSLGEKNGYRNAQSTVIAPTGTIGLVMDCDTTGIEPDFALVKFKKLAGGGYFKIIN 702
Query: 658 KHLLKDLTELGLWSHALKTKIIYENG 683
+ + L LG S ++ + Y G
Sbjct: 703 RSVPAALENLGYSSAQIEEIVSYAVG 728
Score = 39 (18.8 bits), Expect = 1.1e-09, Sum P(4) = 1.1e-09
Identities = 8/21 (38%), Positives = 13/21 (61%)
Query: 670 WSHALKTKIIYENGSVSKISE 690
WS +K +Y +GS K+S+
Sbjct: 893 WSLGVKANALYRDGS--KLSQ 911
Parameters:
V=100
filter=SEG
E=0.001
ctxfactor=1.00
Query ----- As Used ----- ----- Computed ----
Frame MatID Matrix name Lambda K H Lambda K H
+0 0 BLOSUM62 0.318 0.133 0.395 same same same
Q=9,R=2 0.244 0.0300 0.180 n/a n/a n/a
Query
Frame MatID Length Eff.Length E S W T X E2 S2
+0 0 810 798 0.00097 121 3 11 22 0.40 34
37 0.45 37
Statistics:
Database: /share/blast/go-seqdb.fasta
Title: go_20130330-seqdb.fasta
Posted: 5:47:42 AM PDT Apr 1, 2013
Created: 5:47:42 AM PDT Apr 1, 2013
Format: XDF-1
# of letters in database: 169,044,731
# of sequences in database: 368,745
# of database sequences satisfying E: 62
No. of states in DFA: 630 (67 KB)
Total size of DFA: 424 KB (2203 KB)
Time to generate neighborhood: 0.00u 0.00s 0.00t Elapsed: 00:00:00
No. of threads or processors used: 24
Search cpu time: 66.29u 0.11s 66.40t Elapsed: 00:00:03
Total cpu time: 66.31u 0.11s 66.42t Elapsed: 00:00:03
Start: Mon May 20 17:20:46 2013 End: Mon May 20 17:20:49 2013