BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 003575
(810 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|3HNC|A Chain A, Crystal Structure Of Human Ribonucleotide Reductase 1
Bound To The Effector Ttp
pdb|3HNC|B Chain B, Crystal Structure Of Human Ribonucleotide Reductase 1
Bound To The Effector Ttp
pdb|3HND|A Chain A, Crystal Structure Of Human Ribonucleotide Reductase 1
Bound To The Effector Ttp And Substrate Gdp
pdb|3HND|B Chain B, Crystal Structure Of Human Ribonucleotide Reductase 1
Bound To The Effector Ttp And Substrate Gdp
pdb|3HNE|A Chain A, Crystal Structure Of Human Ribonucleotide Reductase 1
Bound To The Effectors Ttp And Atp
pdb|3HNE|B Chain B, Crystal Structure Of Human Ribonucleotide Reductase 1
Bound To The Effectors Ttp And Atp
pdb|3HNF|A Chain A, Crystal Structure Of Human Ribonucleotide Reductase 1
Bound To The Effectors Ttp And Datp
pdb|3HNF|B Chain B, Crystal Structure Of Human Ribonucleotide Reductase 1
Bound To The Effectors Ttp And Datp
Length = 792
Score = 1076 bits (2782), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 515/811 (63%), Positives = 639/811 (78%), Gaps = 20/811 (2%)
Query: 1 MYVIKRDGRKEPVRFDKITARLKKLSYGLSKEHCDPVLVAQKVCAGVYKGVTTTQLDELA 60
M+VIKRDGR+E V FDKIT+R++KL YGL+ + DP + KV G+Y GVTT +LD LA
Sbjct: 1 MHVIKRDGRQERVMFDKITSRIQKLCYGLNMDFVDPAQITMKVIQGLYSGVTTVELDTLA 60
Query: 61 AETAAAMTVNHPDYALLAGRVAVSNLHKITKNSFSETIKDMYNYYNKRSGKKASLVADDV 120
AETAA +T HPDYA+LA R+AVSNLHK TK FS+ ++D+YNY N +GK + +VA
Sbjct: 61 AETAATLTTKHPDYAILAARIAVSNLHKETKKVFSDVMEDLYNYINPHNGKHSPMVAKST 120
Query: 121 YEIIMKNAACLDGAIIXXXXXXXXXXXXKTLERSYLLKMDSRVVERPQHMLMRVSVGIHK 180
+I++ N L+ AII KTLERSYLLK++ +V ERPQHMLMRVSVGIHK
Sbjct: 121 LDIVLANKDRLNSAIIYDRDFSYNYFGFKTLERSYLLKINGKVAERPQHMLMRVSVGIHK 180
Query: 181 DDTDSALKTYHLMSQHWFTHATPTLFNAGTPQPQLSSCFLLCMKDDSIEGIYDTLKKCAI 240
+D D+A++TY+L+S+ WFTHA+PTLFNAGT +PQLSSCFLL MKDDSIEGIYDTLK+CA+
Sbjct: 181 EDIDAAIETYNLLSERWFTHASPTLFNAGTNRPQLSSCFLLSMKDDSIEGIYDTLKQCAL 240
Query: 241 ISKSAGGIGLSIHNIRASGSYIHGTNGSSNGIVPMLQVFNDTARYVDQGGGKRKGAFAIY 300
ISKSAGGIG+++ IRA+GSYI GTNG+SNG+VPML+V+N+TARYVDQGG KR GAFAIY
Sbjct: 241 ISKSAGGIGVAVSCIRATGSYIAGTNGNSNGLVPMLRVYNNTARYVDQGGNKRPGAFAIY 300
Query: 301 LEPWHADIFEFLDLRKNQGKEECRARDLFYALWVPDLFMERVRDDGKWSLFCPSDASGLA 360
LEPWH DIFEFLDL+KN GKEE RARDLF+ALW+PDLFM+RV + WSL CP++ GL
Sbjct: 301 LEPWHLDIFEFLDLKKNTGKEEQRARDLFFALWIPDLFMKRVETNQDWSLMCPNECPGLD 360
Query: 361 DSWGIEFEHLYSQYEEEGRAKMVISARKLWFEILNSQIETGTPYMLFKDSCNRKSNQQNL 420
+ WG EFE LY+ YE++GR + V+ A++LW+ I+ SQ ETGTPYML+KDSCNRKSNQQNL
Sbjct: 361 EVWGEEFEKLYASYEKQGRVRKVVKAQQLWYAIIESQTETGTPYMLYKDSCNRKSNQQNL 420
Query: 421 GTIKSSNLCTEIVEFSSPEETAVCNLASIALPRYVREKGVPVQSNVSKLVGSRDSKNRLF 480
GTIK SNLCTEIVE++S +E AVCNLAS+AL YV + +
Sbjct: 421 GTIKCSNLCTEIVEYTSKDEVAVCNLASLALNMYV-------------------TSEHTY 461
Query: 481 DFERLAEVTKIITENLNKIIDVNHYPIETTRRSNLRHRPIGIGIQGLADTFILLGLPFES 540
DF++LAEVTK++ NLNKIID+N+YP+ SN RHRPIGIG+QGLAD FIL+ PFES
Sbjct: 462 DFKKLAEVTKVVVRNLNKIIDINYYPVPEACLSNKRHRPIGIGVQGLADAFILMRYPFES 521
Query: 541 PEAQQLNKDIFETIYYHALKASAELAVKDGPYETYFGSPMSKGILQVDMWNITPSDRWDW 600
EAQ LNK IFETIYY AL+AS +LA + GPYETY GSP+SKGILQ DMWN+TP+D WDW
Sbjct: 522 AEAQLLNKQIFETIYYGALEASCDLAKEQGPYETYEGSPVSKGILQYDMWNVTPTDLWDW 581
Query: 601 SSLREMISKNGVRNSLLVAPMPTASTSQILGNNECFEPYTSNIYTRRVLSGEFIVVNKHL 660
L+E I+K G+RNSLL+APMPTAST+QILGNNE EPYTSNIYTRRVLSGEF +VN HL
Sbjct: 582 KVLKEKIAKYGIRNSLLIAPMPTASTAQILGNNESIEPYTSNIYTRRVLSGEFQIVNPHL 641
Query: 661 LKDLTELGLWSHALKTKIIYENGSVSKISEIPEELKAIYKTVWEIKQKTLVDMAADRGCY 720
LKDLTE GLW +K +II NGS+ I EIP++LK +YKTVWEI QKT++ MAA+RG +
Sbjct: 642 LKDLTERGLWHEEMKNQIIACNGSIQSIPEIPDDLKQLYKTVWEISQKTVLKMAAERGAF 701
Query: 721 IDQSQSLNIHMEQPDHGKLTSLHFYAWSKGMKTGMYYLRTRAAADAIKFTVDTSVLNNEK 780
IDQSQSLNIH+ +P++GKLTS+HFY W +G+KTGMYYLRTR AA+ I+FT++ L +++
Sbjct: 702 IDQSQSLNIHIAEPNYGKLTSMHFYGWKQGLKTGMYYLRTRPAANPIQFTLNKEKLKDKE 761
Query: 781 ANRADNDVEA-NLAQVVCSLKNQEECMACGS 810
+ + + N A +VCSL+N++EC+ CGS
Sbjct: 762 KVSKEEEEKERNTAAMVCSLENRDECLMCGS 792
>pdb|1ZYZ|A Chain A, Structures Of Yeast Ribonucloetide Reductase I
pdb|1ZYZ|B Chain B, Structures Of Yeast Ribonucloetide Reductase I
pdb|1ZZD|A Chain A, Structures Of Yeast Ribonucleotide Reductase I
pdb|2CVS|A Chain A, Structures Of Yeast Ribonucleotide Reductase I
pdb|2CVT|A Chain A, Structures Of Yeast Ribonucleotide Reductase I
pdb|2CVU|A Chain A, Structures Of Yeast Ribonucleotide Reductase I
pdb|2CVV|A Chain A, Structures Of Yeast Ribonucleotide Reductase I
pdb|2CVW|A Chain A, Structures Of Yeast Ribonucleotide Reductase I
pdb|2CVX|A Chain A, Structures Of Yeast Ribonucleotide Reductase I
pdb|2CVY|A Chain A, Structures Of Yeast Ribonucleotide Reductase I
pdb|2EUD|A Chain A, Structures Of Yeast Ribonucleotide Reductase I Complexed
With Ligands And Subunit Peptides
pdb|2ZLF|A Chain A, The Structural Basis For Peptidomimetic Inhibition Of
Eukaryotic Ribonucleotide Reductase
pdb|2ZLG|A Chain A, The Structual Basis For Peptidomimetic Inhibition Of
Eukaryotic Ribonucleotide Reductase
pdb|3K8T|A Chain A, Structure Of Eukaryotic Rnr Large Subunit R1 Complexed
With Designed Adp Analog Compound
pdb|3PAW|A Chain A, Low Resolution X-Ray Crystal Structure Of Yeast Rnr1p With
Datp Bound In The A-Site
pdb|3PAW|B Chain B, Low Resolution X-Ray Crystal Structure Of Yeast Rnr1p With
Datp Bound In The A-Site
pdb|3PAW|C Chain C, Low Resolution X-Ray Crystal Structure Of Yeast Rnr1p With
Datp Bound In The A-Site
pdb|3PAW|D Chain D, Low Resolution X-Ray Crystal Structure Of Yeast Rnr1p With
Datp Bound In The A-Site
pdb|3S87|A Chain A, Structure Of Yeast Ribonucleotide Reductase 1 With Dgtp
And Adp
pdb|3S8B|A Chain A, Structure Of Yeast Ribonucleotide Reductase 1 With Amppnp
And Cdp
pdb|3RSR|A Chain A, Crystal Structure Of 5-Nitp Inhibition Of Yeast
Ribonucleotide Reductase
Length = 888
Score = 1061 bits (2745), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 484/785 (61%), Positives = 622/785 (79%), Gaps = 15/785 (1%)
Query: 1 MYVIKRDGRKEPVRFDKITARLKKLSYGLSKEHCDPVLVAQKVCAGVYKGVTTTQLDELA 60
MYV KRDGRKEPV+FDKITAR+ +L YGL +H D V V Q++ +GVY+GVTT +LD LA
Sbjct: 1 MYVYKRDGRKEPVQFDKITARISRLCYGLDPKHIDAVKVTQRIISGVYEGVTTIELDNLA 60
Query: 61 AETAAAMTVNHPDYALLAGRVAVSNLHKITKNSFSETIKDMYNYYNKRSGKKASLVADDV 120
AET A MT HPDYA LA R+A+SNLHK T FS+ ++D+Y Y N +GK A +++DDV
Sbjct: 61 AETCAYMTTVHPDYATLAARIAISNLHKQTTKQFSKVVEDLYRYVNAATGKPAPMISDDV 120
Query: 121 YEIIMKNAACLDGAIIXXXXXXXXXXXXKTLERSYLLKMDSRVVERPQHMLMRVSVGIHK 180
Y I+M+N L+ AI+ KTLERSYLL+++ +V ERPQH++MRV++GIH
Sbjct: 121 YNIVMENKDKLNSAIVYDRDFQYSYFGFKTLERSYLLRINGQVAERPQHLIMRVALGIHG 180
Query: 181 DDTDSALKTYHLMSQHWFTHATPTLFNAGTPQPQLSSCFLLCMKDDSIEGIYDTLKKCAI 240
D ++AL+TY+LMS +FTHA+PTLFNAGTP+PQ+SSCFL+ MK+DSIEGIYDTLK+CA+
Sbjct: 181 RDIEAALETYNLMSLKYFTHASPTLFNAGTPKPQMSSCFLVAMKEDSIEGIYDTLKECAL 240
Query: 241 ISKSAGGIGLSIHNIRASGSYIHGTNGSSNGIVPMLQVFNDTARYVDQGGGKRKGAFAIY 300
ISK+AGGIGL IHNIR++GSYI GTNG+SNG++PM++VFN+TARYVDQGG KR GAFA+Y
Sbjct: 241 ISKTAGGIGLHIHNIRSTGSYIAGTNGTSNGLIPMIRVFNNTARYVDQGGNKRPGAFALY 300
Query: 301 LEPWHADIFEFLDLRKNQGKEECRARDLFYALWVPDLFMERVRDDGKWSLFCPSDASGLA 360
LEPWHADIF+F+D+RKN GKEE RARDLF ALW+PDLFM+RV ++G W+LF P+ A GL+
Sbjct: 301 LEPWHADIFDFIDIRKNHGKEEIRARDLFPALWIPDLFMKRVEENGTWTLFSPTSAPGLS 360
Query: 361 DSWGIEFEHLYSQYEEEGRAKMVISARKLWFEILNSQIETGTPYMLFKDSCNRKSNQQNL 420
D +G EFE LY++YE+EGR K I A+KLW+ IL +Q ETGTP++++KD+CNRKSNQ+NL
Sbjct: 361 DCYGDEFEALYTRYEKEGRGK-TIKAQKLWYSILEAQTETGTPFVVYKDACNRKSNQKNL 419
Query: 421 GTIKSSNLCTEIVEFSSPEETAVCNLASIALPRYVREKGVPVQSNVSKLVGSRDSKNRLF 480
G IKSSNLC EIVE+S+P+ETAVCNLAS+ALP ++ S D K +
Sbjct: 420 GVIKSSNLCCEIVEYSAPDETAVCNLASVALPAFIET--------------SEDGKTSTY 465
Query: 481 DFERLAEVTKIITENLNKIIDVNHYPIETTRRSNLRHRPIGIGIQGLADTFILLGLPFES 540
+F++L E+ K++T NLN++ID N+YP+E R+SN+RHRPI +G+QGLADTF+LL LPF+S
Sbjct: 466 NFKKLHEIAKVVTRNLNRVIDRNYYPVEEARKSNMRHRPIALGVQGLADTFMLLRLPFDS 525
Query: 541 PEAQQLNKDIFETIYYHALKASAELAVKDGPYETYFGSPMSKGILQVDMWNITPSDRWDW 600
EA+ LN IFETIY+ +++AS ELA KDGPYET+ GSP S+GILQ DMW+ P WDW
Sbjct: 526 EEARLLNIQIFETIYHASMEASCELAQKDGPYETFQGSPASQGILQFDMWDQKPYGMWDW 585
Query: 601 SSLREMISKNGVRNSLLVAPMPTASTSQILGNNECFEPYTSNIYTRRVLSGEFIVVNKHL 660
+LR+ I K+GVRNSL +APMPTASTSQILG NECFEP TSN+Y+RRVLSGEF VVN +L
Sbjct: 586 DTLRKDIMKHGVRNSLTMAPMPTASTSQILGYNECFEPVTSNMYSRRVLSGEFQVVNPYL 645
Query: 661 LKDLTELGLWSHALKTKIIYENGSVSKISEIPEELKAIYKTVWEIKQKTLVDMAADRGCY 720
L+DL +LG+W +K +I +NGS+ + +P+ELK +YKTVWEI QKT+++MAADR Y
Sbjct: 646 LRDLVDLGIWDEGMKQYLITQNGSIQGLPNVPQELKDLYKTVWEISQKTIINMAADRSVY 705
Query: 721 IDQSQSLNIHMEQPDHGKLTSLHFYAWSKGMKTGMYYLRTRAAADAIKFTVDTSVLNNEK 780
IDQS SLN+ + P GKLTS+HFY W KG+KTGMYYLRT+AA+ AI+FT+D + +
Sbjct: 706 IDQSHSLNLFLRAPTMGKLTSMHFYGWKKGLKTGMYYLRTQAASAAIQFTIDQKIADQAT 765
Query: 781 ANRAD 785
N AD
Sbjct: 766 ENVAD 770
>pdb|3TB9|A Chain A, Structure Of Yeast Ribonucleotide Reductase 1 Q288a With
Amppnp And Cdp
pdb|3TBA|A Chain A, Structure Of Yeast Ribonucleotide Reductase 1 Q288a With
Dgtp And Adp
Length = 888
Score = 1059 bits (2738), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 483/785 (61%), Positives = 621/785 (79%), Gaps = 15/785 (1%)
Query: 1 MYVIKRDGRKEPVRFDKITARLKKLSYGLSKEHCDPVLVAQKVCAGVYKGVTTTQLDELA 60
MYV KRDGRKEPV+FDKITAR+ +L YGL +H D V V Q++ +GVY+GVTT +LD LA
Sbjct: 1 MYVYKRDGRKEPVQFDKITARISRLCYGLDPKHIDAVKVTQRIISGVYEGVTTIELDNLA 60
Query: 61 AETAAAMTVNHPDYALLAGRVAVSNLHKITKNSFSETIKDMYNYYNKRSGKKASLVADDV 120
AET A MT HPDYA LA R+A+SNLHK T FS+ ++D+Y Y N +GK A +++DDV
Sbjct: 61 AETCAYMTTVHPDYATLAARIAISNLHKQTTKQFSKVVEDLYRYVNAATGKPAPMISDDV 120
Query: 121 YEIIMKNAACLDGAIIXXXXXXXXXXXXKTLERSYLLKMDSRVVERPQHMLMRVSVGIHK 180
Y I+M+N L+ AI+ KTLERSYLL+++ +V ERPQH++MRV++GIH
Sbjct: 121 YNIVMENKDKLNSAIVYDRDFQYSYFGFKTLERSYLLRINGQVAERPQHLIMRVALGIHG 180
Query: 181 DDTDSALKTYHLMSQHWFTHATPTLFNAGTPQPQLSSCFLLCMKDDSIEGIYDTLKKCAI 240
D ++AL+TY+LMS +FTHA+PTLFNAGTP+PQ+SSCFL+ MK+DSIEGIYDTLK+CA+
Sbjct: 181 RDIEAALETYNLMSLKYFTHASPTLFNAGTPKPQMSSCFLVAMKEDSIEGIYDTLKECAL 240
Query: 241 ISKSAGGIGLSIHNIRASGSYIHGTNGSSNGIVPMLQVFNDTARYVDQGGGKRKGAFAIY 300
ISK+AGGIGL IHNIR++GSYI GTNG+SNG++PM++VFN+TARYVD GG KR GAFA+Y
Sbjct: 241 ISKTAGGIGLHIHNIRSTGSYIAGTNGTSNGLIPMIRVFNNTARYVDAGGNKRPGAFALY 300
Query: 301 LEPWHADIFEFLDLRKNQGKEECRARDLFYALWVPDLFMERVRDDGKWSLFCPSDASGLA 360
LEPWHADIF+F+D+RKN GKEE RARDLF ALW+PDLFM+RV ++G W+LF P+ A GL+
Sbjct: 301 LEPWHADIFDFIDIRKNHGKEEIRARDLFPALWIPDLFMKRVEENGTWTLFSPTSAPGLS 360
Query: 361 DSWGIEFEHLYSQYEEEGRAKMVISARKLWFEILNSQIETGTPYMLFKDSCNRKSNQQNL 420
D +G EFE LY++YE+EGR K I A+KLW+ IL +Q ETGTP++++KD+CNRKSNQ+NL
Sbjct: 361 DCYGDEFEALYTRYEKEGRGK-TIKAQKLWYSILEAQTETGTPFVVYKDACNRKSNQKNL 419
Query: 421 GTIKSSNLCTEIVEFSSPEETAVCNLASIALPRYVREKGVPVQSNVSKLVGSRDSKNRLF 480
G IKSSNLC EIVE+S+P+ETAVCNLAS+ALP ++ S D K +
Sbjct: 420 GVIKSSNLCCEIVEYSAPDETAVCNLASVALPAFIET--------------SEDGKTSTY 465
Query: 481 DFERLAEVTKIITENLNKIIDVNHYPIETTRRSNLRHRPIGIGIQGLADTFILLGLPFES 540
+F++L E+ K++T NLN++ID N+YP+E R+SN+RHRPI +G+QGLADTF+LL LPF+S
Sbjct: 466 NFKKLHEIAKVVTRNLNRVIDRNYYPVEEARKSNMRHRPIALGVQGLADTFMLLRLPFDS 525
Query: 541 PEAQQLNKDIFETIYYHALKASAELAVKDGPYETYFGSPMSKGILQVDMWNITPSDRWDW 600
EA+ LN IFETIY+ +++AS ELA KDGPYET+ GSP S+GILQ DMW+ P WDW
Sbjct: 526 EEARLLNIQIFETIYHASMEASCELAQKDGPYETFQGSPASQGILQFDMWDQKPYGMWDW 585
Query: 601 SSLREMISKNGVRNSLLVAPMPTASTSQILGNNECFEPYTSNIYTRRVLSGEFIVVNKHL 660
+LR+ I K+GVRNSL +APMPTASTSQILG NECFEP TSN+Y+RRVLSGEF VVN +L
Sbjct: 586 DTLRKDIMKHGVRNSLTMAPMPTASTSQILGYNECFEPVTSNMYSRRVLSGEFQVVNPYL 645
Query: 661 LKDLTELGLWSHALKTKIIYENGSVSKISEIPEELKAIYKTVWEIKQKTLVDMAADRGCY 720
L+DL +LG+W +K +I +NGS+ + +P+ELK +YKTVWEI QKT+++MAADR Y
Sbjct: 646 LRDLVDLGIWDEGMKQYLITQNGSIQGLPNVPQELKDLYKTVWEISQKTIINMAADRSVY 705
Query: 721 IDQSQSLNIHMEQPDHGKLTSLHFYAWSKGMKTGMYYLRTRAAADAIKFTVDTSVLNNEK 780
IDQS SLN+ + P GKLTS+HFY W KG+KTGMYYLRT+AA+ AI+FT+D + +
Sbjct: 706 IDQSHSLNLFLRAPTMGKLTSMHFYGWKKGLKTGMYYLRTQAASAAIQFTIDQKIADQAT 765
Query: 781 ANRAD 785
N AD
Sbjct: 766 ENVAD 770
>pdb|3S8A|A Chain A, Structure Of Yeast Ribonucleotide Reductase R293a With
Dgtp
pdb|3S8C|A Chain A, Structure Of Yeast Ribonucleotide Reductase 1 R293a With
Amppnp And Cdp
Length = 888
Score = 1058 bits (2737), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 483/785 (61%), Positives = 621/785 (79%), Gaps = 15/785 (1%)
Query: 1 MYVIKRDGRKEPVRFDKITARLKKLSYGLSKEHCDPVLVAQKVCAGVYKGVTTTQLDELA 60
MYV KRDGRKEPV+FDKITAR+ +L YGL +H D V V Q++ +GVY+GVTT +LD LA
Sbjct: 1 MYVYKRDGRKEPVQFDKITARISRLCYGLDPKHIDAVKVTQRIISGVYEGVTTIELDNLA 60
Query: 61 AETAAAMTVNHPDYALLAGRVAVSNLHKITKNSFSETIKDMYNYYNKRSGKKASLVADDV 120
AET A MT HPDYA LA R+A+SNLHK T FS+ ++D+Y Y N +GK A +++DDV
Sbjct: 61 AETCAYMTTVHPDYATLAARIAISNLHKQTTKQFSKVVEDLYRYVNAATGKPAPMISDDV 120
Query: 121 YEIIMKNAACLDGAIIXXXXXXXXXXXXKTLERSYLLKMDSRVVERPQHMLMRVSVGIHK 180
Y I+M+N L+ AI+ KTLERSYLL+++ +V ERPQH++MRV++GIH
Sbjct: 121 YNIVMENKDKLNSAIVYDRDFQYSYFGFKTLERSYLLRINGQVAERPQHLIMRVALGIHG 180
Query: 181 DDTDSALKTYHLMSQHWFTHATPTLFNAGTPQPQLSSCFLLCMKDDSIEGIYDTLKKCAI 240
D ++AL+TY+LMS +FTHA+PTLFNAGTP+PQ+SSCFL+ MK+DSIEGIYDTLK+CA+
Sbjct: 181 RDIEAALETYNLMSLKYFTHASPTLFNAGTPKPQMSSCFLVAMKEDSIEGIYDTLKECAL 240
Query: 241 ISKSAGGIGLSIHNIRASGSYIHGTNGSSNGIVPMLQVFNDTARYVDQGGGKRKGAFAIY 300
ISK+AGGIGL IHNIR++GSYI GTNG+SNG++PM++VFN+TARYVDQGG K GAFA+Y
Sbjct: 241 ISKTAGGIGLHIHNIRSTGSYIAGTNGTSNGLIPMIRVFNNTARYVDQGGNKAPGAFALY 300
Query: 301 LEPWHADIFEFLDLRKNQGKEECRARDLFYALWVPDLFMERVRDDGKWSLFCPSDASGLA 360
LEPWHADIF+F+D+RKN GKEE RARDLF ALW+PDLFM+RV ++G W+LF P+ A GL+
Sbjct: 301 LEPWHADIFDFIDIRKNHGKEEIRARDLFPALWIPDLFMKRVEENGTWTLFSPTSAPGLS 360
Query: 361 DSWGIEFEHLYSQYEEEGRAKMVISARKLWFEILNSQIETGTPYMLFKDSCNRKSNQQNL 420
D +G EFE LY++YE+EGR K I A+KLW+ IL +Q ETGTP++++KD+CNRKSNQ+NL
Sbjct: 361 DCYGDEFEALYTRYEKEGRGK-TIKAQKLWYSILEAQTETGTPFVVYKDACNRKSNQKNL 419
Query: 421 GTIKSSNLCTEIVEFSSPEETAVCNLASIALPRYVREKGVPVQSNVSKLVGSRDSKNRLF 480
G IKSSNLC EIVE+S+P+ETAVCNLAS+ALP ++ S D K +
Sbjct: 420 GVIKSSNLCCEIVEYSAPDETAVCNLASVALPAFIET--------------SEDGKTSTY 465
Query: 481 DFERLAEVTKIITENLNKIIDVNHYPIETTRRSNLRHRPIGIGIQGLADTFILLGLPFES 540
+F++L E+ K++T NLN++ID N+YP+E R+SN+RHRPI +G+QGLADTF+LL LPF+S
Sbjct: 466 NFKKLHEIAKVVTRNLNRVIDRNYYPVEEARKSNMRHRPIALGVQGLADTFMLLRLPFDS 525
Query: 541 PEAQQLNKDIFETIYYHALKASAELAVKDGPYETYFGSPMSKGILQVDMWNITPSDRWDW 600
EA+ LN IFETIY+ +++AS ELA KDGPYET+ GSP S+GILQ DMW+ P WDW
Sbjct: 526 EEARLLNIQIFETIYHASMEASCELAQKDGPYETFQGSPASQGILQFDMWDQKPYGMWDW 585
Query: 601 SSLREMISKNGVRNSLLVAPMPTASTSQILGNNECFEPYTSNIYTRRVLSGEFIVVNKHL 660
+LR+ I K+GVRNSL +APMPTASTSQILG NECFEP TSN+Y+RRVLSGEF VVN +L
Sbjct: 586 DTLRKDIMKHGVRNSLTMAPMPTASTSQILGYNECFEPVTSNMYSRRVLSGEFQVVNPYL 645
Query: 661 LKDLTELGLWSHALKTKIIYENGSVSKISEIPEELKAIYKTVWEIKQKTLVDMAADRGCY 720
L+DL +LG+W +K +I +NGS+ + +P+ELK +YKTVWEI QKT+++MAADR Y
Sbjct: 646 LRDLVDLGIWDEGMKQYLITQNGSIQGLPNVPQELKDLYKTVWEISQKTIINMAADRSVY 705
Query: 721 IDQSQSLNIHMEQPDHGKLTSLHFYAWSKGMKTGMYYLRTRAAADAIKFTVDTSVLNNEK 780
IDQS SLN+ + P GKLTS+HFY W KG+KTGMYYLRT+AA+ AI+FT+D + +
Sbjct: 706 IDQSHSLNLFLRAPTMGKLTSMHFYGWKKGLKTGMYYLRTQAASAAIQFTIDQKIADQAT 765
Query: 781 ANRAD 785
N AD
Sbjct: 766 ENVAD 770
>pdb|2WGH|A Chain A, Human Ribonucleotide Reductase R1 Subunit (Rrm1) In
Complex With Datp And Mg.
pdb|2WGH|B Chain B, Human Ribonucleotide Reductase R1 Subunit (Rrm1) In
Complex With Datp And Mg
Length = 676
Score = 970 bits (2507), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 453/688 (65%), Positives = 551/688 (80%), Gaps = 19/688 (2%)
Query: 75 ALLAGRVAVSNLHKITKNSFSETIKDMYNYYNKRSGKKASLVADDVYEIIMKNAACLDGA 134
A+LA R+AVSNLHK TK FS+ ++D+YNY N +GK + +VA +I++ N L+ A
Sbjct: 2 AILAARIAVSNLHKETKKVFSDVMEDLYNYINPHNGKHSPMVAKSTLDIVLANKDRLNSA 61
Query: 135 IIXXXXXXXXXXXXKTLERSYLLKMDSRVVERPQHMLMRVSVGIHKDDTDSALKTYHLMS 194
II KTLERSYLLK++ +V ERPQHMLMRVSVGIHK+D D+A++TY+L+S
Sbjct: 62 IIYDRDFSYNYFGFKTLERSYLLKINGKVAERPQHMLMRVSVGIHKEDIDAAIETYNLLS 121
Query: 195 QHWFTHATPTLFNAGTPQPQLSSCFLLCMKDDSIEGIYDTLKKCAIISKSAGGIGLSIHN 254
+ WFTHA+PTLFNAGT +PQLSSCFLL MKDDSIEGIYDTLK+CA+ISKSAGGIG+++
Sbjct: 122 ERWFTHASPTLFNAGTNRPQLSSCFLLSMKDDSIEGIYDTLKQCALISKSAGGIGVAVSC 181
Query: 255 IRASGSYIHGTNGSSNGIVPMLQVFNDTARYVDQGGGKRKGAFAIYLEPWHADIFEFLDL 314
IRA+GSYI GTNG+SNG+VPML+V+N+TARYVDQGG KR GAFAIYLEPWH DIFEFLDL
Sbjct: 182 IRATGSYIAGTNGNSNGLVPMLRVYNNTARYVDQGGNKRPGAFAIYLEPWHLDIFEFLDL 241
Query: 315 RKNQGKEECRARDLFYALWVPDLFMERVRDDGKWSLFCPSDASGLADSWGIEFEHLYSQY 374
+KN GKEE RARDLF+ALW+PDLFM+RV + WSL CP++ GL + WG EFE LY+ Y
Sbjct: 242 KKNTGKEEQRARDLFFALWIPDLFMKRVETNQDWSLMCPNECPGLDEVWGEEFEKLYASY 301
Query: 375 EEEGRAKMVISARKLWFEILNSQIETGTPYMLFKDSCNRKSNQQNLGTIKSSNLCTEIVE 434
E++GR + V+ A++LW+ I+ SQ ETGTPYML+KDSCNRKSNQQNLGTIK SNLCTEIVE
Sbjct: 302 EKQGRVRKVVKAQQLWYAIIESQTETGTPYMLYKDSCNRKSNQQNLGTIKCSNLCTEIVE 361
Query: 435 FSSPEETAVCNLASIALPRYVREKGVPVQSNVSKLVGSRDSKNRLFDFERLAEVTKIITE 494
++S +E AVCNLAS+AL YV + +DF++LAEVTK++
Sbjct: 362 YTSKDEVAVCNLASLALNMYV-------------------TSEHTYDFKKLAEVTKVVVR 402
Query: 495 NLNKIIDVNHYPIETTRRSNLRHRPIGIGIQGLADTFILLGLPFESPEAQQLNKDIFETI 554
NLNKIID+N+YP+ SN RHRPIGIG+QGLAD FIL+ PFES EAQ LNK IFETI
Sbjct: 403 NLNKIIDINYYPVPEACLSNKRHRPIGIGVQGLADAFILMRYPFESAEAQLLNKQIFETI 462
Query: 555 YYHALKASAELAVKDGPYETYFGSPMSKGILQVDMWNITPSDRWDWSSLREMISKNGVRN 614
YY AL+AS +LA + GPYETY GSP+SKGILQ DMWN+TP+D WDW L+E I+K G+RN
Sbjct: 463 YYGALEASCDLAKEQGPYETYEGSPVSKGILQYDMWNVTPTDLWDWKVLKEKIAKYGIRN 522
Query: 615 SLLVAPMPTASTSQILGNNECFEPYTSNIYTRRVLSGEFIVVNKHLLKDLTELGLWSHAL 674
SLL+APMPTAST+QILGNNE EPYTSNIYTRRVLSGEF +VN HLLKDLTE GLW +
Sbjct: 523 SLLIAPMPTASTAQILGNNESIEPYTSNIYTRRVLSGEFQIVNPHLLKDLTERGLWHEEM 582
Query: 675 KTKIIYENGSVSKISEIPEELKAIYKTVWEIKQKTLVDMAADRGCYIDQSQSLNIHMEQP 734
K +II NGS+ I EIP++LK +YKTVWEI QKT++ MAA+RG +IDQSQSLNIH+ +P
Sbjct: 583 KNQIIACNGSIQSIPEIPDDLKQLYKTVWEISQKTVLKMAAERGAFIDQSQSLNIHIAEP 642
Query: 735 DHGKLTSLHFYAWSKGMKTGMYYLRTRA 762
++GKLTS+HFY W +G+KTGMYYLRTRA
Sbjct: 643 NYGKLTSMHFYGWKQGLKTGMYYLRTRA 670
>pdb|4R1R|A Chain A, Ribonucleotide Reductase R1 Protein With Substrate, Gdp
And Effector Dttp From Escherichia Coli
pdb|4R1R|B Chain B, Ribonucleotide Reductase R1 Protein With Substrate, Gdp
And Effector Dttp From Escherichia Coli
pdb|4R1R|C Chain C, Ribonucleotide Reductase R1 Protein With Substrate, Gdp
And Effector Dttp From Escherichia Coli
Length = 761
Score = 209 bits (531), Expect = 7e-54, Method: Compositional matrix adjust.
Identities = 190/702 (27%), Positives = 295/702 (42%), Gaps = 68/702 (9%)
Query: 1 MYVIKRDGRKEPVRFDKITARLKKLSYGLSKEHCDPVLVAQKVCAGVYKGVTTTQLDELA 60
+ V KRDG E + DKI L + GL V + + Y G+ T+ + E
Sbjct: 5 LLVTKRDGSTERINLDKIHRVLDWAAEGLHNVSISQVELRSHI--QFYDGIKTSDIHETI 62
Query: 61 AETAAAM-TVNHPDYALLAGRVAVSNLHKITKNSFSETIKDMYNYYNK--RSGKKASLVA 117
+ AA + + + PDY LA R+A+ +L K F +Y++ K GK + +
Sbjct: 63 IKAAADLISRDAPDYQYLAARLAIFHLRKKAYGQFEPPA--LYDHVVKMVEMGKYDNHLL 120
Query: 118 DDVYEIIMKNAACLDGAIIXXXXXXXXXXXXKTLERSYLL--KMDSRVVERPQHMLMRVS 175
+D E K +D I K LE YL+ ++ + E Q + + V+
Sbjct: 121 EDYTEEEFKQ---MDTFIDHDRDMTFSYAAVKQLEGKYLVQNRVTGEIYESAQFLYILVA 177
Query: 176 VGIHKD-----DTDSALKTYHLMSQHWFTHATPTLFNAGTPQPQLSSCFLL-CMKDDSIE 229
+ + + Y +S + TP + TP Q SSC L+ C DS++
Sbjct: 178 ACLFSNYPRETRLQYVKRFYDAVSTFKISLPTPIMSGVRTPTRQFSSCVLIEC--GDSLD 235
Query: 230 GIYDTLKKCAIISKSAGGIGLSIHNIRASGSYIHGTNGSSNGIVPMLQVFNDTARYVDQG 289
I T GIG++ IRA GS I G G +P + F + QG
Sbjct: 236 SINATSSAIVKYVSQRAGIGINAGRIRALGSPIRGGEAFHTGCIPFYKHFQTAVKSASQG 295
Query: 290 GGKRKGAFAIYLEPWHADIFEFLDLRKNQGKEECRARDLFYALWVPDLFMERVRDDGKWS 349
G R GA ++ WH ++ L L+ N+G E R R + Y + + L R+ +
Sbjct: 296 G-VRGGAATLFYPMWHLEVESLLVLKNNRGVEGNRVRHMDYGVQINKLMYTRLLKGEDIT 354
Query: 350 LFCPSDASGLADSWGI---EFEHLYSQYEEEGRA-KMVISARKLWFEILNSQIETGTPYM 405
LF PSD GL D++ EFE LY++YE++ K + A +L+ ++ + TG Y+
Sbjct: 355 LFSPSDVPGLYDAFFADQEEFERLYTKYEKDDSIRKQRVKAVELFSLMMQERASTGRIYI 414
Query: 406 LFKDSCNRKSN-QQNLGTIKSSNLCTEIVEFSSP--------EETAVCNLASIALPRYVR 456
D CN S + ++ SNLC EI + P E A+C L++ L
Sbjct: 415 QNVDHCNTHSPFDPAIAPVRQSNLCLEIALPTKPLNDVNDENGEIALCTLSAFNL----- 469
Query: 457 EKGVPVQSNVSKLVGSRDSKNRLFDFERLAEVTKIITENLNKIIDVNHYPIETTRRSNLR 516
+ + + L E+ + L+ ++D YPI +R +
Sbjct: 470 --------------------GAINNLDELEELAILAVRALDALLDYQDYPIPAAKRGAMG 509
Query: 517 HRPIGIGIQGLADTFILLGLPFESPEAQQLNKDIFETIYYHALKASAELAVKDGPYETYF 576
R +GIG+ A G + A L FE I Y+ LKAS ELA + G +
Sbjct: 510 RRTLGIGVINFAYYLAKHGKRYSDGSANNLTHKTFEAIQYYLLKASNELAKEQGACPWFN 569
Query: 577 GSPMSKGILQVDMWN------ITPSDRWDWSSLREMISKNGVRNSLLVAPMPTASTSQIL 630
+ +KGIL +D + +DW +LRE I +G+RNS L A MP+ ++SQI
Sbjct: 570 ETTYAKGILPIDTYKKDLDTIANEPLHYDWEALRESIKTHGLRNSTLSALMPSETSSQIS 629
Query: 631 GNNECFEPYTSNIYTRRVLSGEF--IVVNKHLLKDLTELGLW 670
EP + + G +V + L D EL LW
Sbjct: 630 NATNGIEPPRGYVSIKASKDGILRQVVPDYEHLHDAYEL-LW 670
>pdb|2XAP|A Chain A, Ribonucleotide Reductase Y731no2y Modified R1 Subunit Of
E. Coli To 2.1 A Resolution
pdb|2XAP|B Chain B, Ribonucleotide Reductase Y731no2y Modified R1 Subunit Of
E. Coli To 2.1 A Resolution
pdb|2XAP|C Chain C, Ribonucleotide Reductase Y731no2y Modified R1 Subunit Of
E. Coli To 2.1 A Resolution
pdb|2XO5|A Chain A, Ribonucleotide Reductase Y731nh2y Modified R1 Subunit Of
E. Coli
pdb|2XO5|B Chain B, Ribonucleotide Reductase Y731nh2y Modified R1 Subunit Of
E. Coli
pdb|2XO5|C Chain C, Ribonucleotide Reductase Y731nh2y Modified R1 Subunit Of
E. Coli
Length = 761
Score = 208 bits (529), Expect = 1e-53, Method: Compositional matrix adjust.
Identities = 191/702 (27%), Positives = 298/702 (42%), Gaps = 68/702 (9%)
Query: 1 MYVIKRDGRKEPVRFDKITARLKKLSYGLSKEHCDPVLVAQKVCAGVYKGVTTTQLDELA 60
+ V KRDG E + DKI L + GL V + + Y G+ T+ + E
Sbjct: 5 LLVTKRDGSTERINLDKIHRVLDWAAEGLHNVSISQVELRSHI--QFYDGIKTSDIHETI 62
Query: 61 AETAAAM-TVNHPDYALLAGRVAVSNLHKITKNSFSETIKDMYNYYNK--RSGKKASLVA 117
+ AA + + + PDY LA R+A+ +L K F +Y++ K GK + +
Sbjct: 63 IKAAADLISRDAPDYQYLAARLAIFHLRKKAYGQFEPPA--LYDHVVKMVEMGKYDNHLL 120
Query: 118 DDVYEIIMKNAACLDGAIIXXXXXXXXXXXXKTLERSYLL--KMDSRVVERPQHMLMRVS 175
+D E K +D I K LE YL+ ++ + E Q + + V+
Sbjct: 121 EDYTEEEFKQ---MDTFIDHDRDMTFSYAAVKQLEGKYLVQNRVTGEIYESAQFLYILVA 177
Query: 176 VGIHKD-DTDSAL----KTYHLMSQHWFTHATPTLFNAGTPQPQLSSCFLL-CMKDDSIE 229
+ + ++ L + Y +S + TP + TP Q SSC L+ C DS++
Sbjct: 178 ACLFSNYPRETRLQYVKRFYDAVSTFKISLPTPIMSGVRTPTRQFSSCVLIEC--GDSLD 235
Query: 230 GIYDTLKKCAIISKSAGGIGLSIHNIRASGSYIHGTNGSSNGIVPMLQVFNDTARYVDQG 289
I T GIG++ IRA GS I G G +P + F + QG
Sbjct: 236 SINATSSAIVKYVSQRAGIGINAGRIRALGSPIRGGEAFHTGCIPFYKHFQTAVKSCSQG 295
Query: 290 GGKRKGAFAIYLEPWHADIFEFLDLRKNQGKEECRARDLFYALWVPDLFMERVRDDGKWS 349
G R GA ++ WH ++ L L+ N+G E R R + Y + + L R+ +
Sbjct: 296 G-VRGGAATLFYPMWHLEVESLLVLKNNRGVEGNRVRHMDYGVQINKLMYTRLLKGEDIT 354
Query: 350 LFCPSDASGLADSWGI---EFEHLYSQYEEEGRA-KMVISARKLWFEILNSQIETGTPYM 405
LF PSD GL D++ EFE LY++YE++ K + A +L+ ++ + TG Y+
Sbjct: 355 LFSPSDVPGLYDAFFADQEEFERLYTKYEKDDSIRKQRVKAVELFSLMMQERASTGRIYI 414
Query: 406 LFKDSCNRKSN-QQNLGTIKSSNLCTEIVEFSSP--------EETAVCNLASIALPRYVR 456
D CN S + ++ SNLC EI + P E A+C L++ L
Sbjct: 415 QNVDHCNTHSPFDPAIAPVRQSNLCLEIALPTKPLNDVNDENGEIALCTLSAFNL----- 469
Query: 457 EKGVPVQSNVSKLVGSRDSKNRLFDFERLAEVTKIITENLNKIIDVNHYPIETTRRSNLR 516
+ + + L E+ + L+ ++D YPI +R +
Sbjct: 470 --------------------GAINNLDELEELAILAVRALDALLDYQDYPIPAAKRGAMG 509
Query: 517 HRPIGIGIQGLADTFILLGLPFESPEAQQLNKDIFETIYYHALKASAELAVKDGPYETYF 576
R +GIG+ A G + A L FE I Y+ LKAS ELA + G +
Sbjct: 510 RRTLGIGVINFAYYLAKHGKRYSDGSANNLTHKTFEAIQYYLLKASNELAKEQGACPWFN 569
Query: 577 GSPMSKGILQVDMWN------ITPSDRWDWSSLREMISKNGVRNSLLVAPMPTASTSQIL 630
+ +KGIL +D + +DW +LRE I +G+RNS L A MP+ ++SQI
Sbjct: 570 ETTYAKGILPIDTYKKDLDTIANEPLHYDWEALRESIKTHGLRNSTLSALMPSETSSQIS 629
Query: 631 GNNECFEPYTSNIYTRRVLSGEF--IVVNKHLLKDLTELGLW 670
EP + + G +V + L D EL LW
Sbjct: 630 NATNGIEPPRGYVSIKASKDGILRQVVPDYEHLHDAYEL-LW 670
>pdb|2XAK|A Chain A, Ribonucleotide Reductase Y730no2y Modified R1 Subunit Of
E. Coli
pdb|2XAK|B Chain B, Ribonucleotide Reductase Y730no2y Modified R1 Subunit Of
E. Coli
pdb|2XAK|C Chain C, Ribonucleotide Reductase Y730no2y Modified R1 Subunit Of
E. Coli
pdb|2XO4|A Chain A, Ribonucleotide Reductase Y730nh2y Modified R1 Subunit Of
E. Coli
pdb|2XO4|B Chain B, Ribonucleotide Reductase Y730nh2y Modified R1 Subunit Of
E. Coli
pdb|2XO4|C Chain C, Ribonucleotide Reductase Y730nh2y Modified R1 Subunit Of
E. Coli
Length = 761
Score = 208 bits (529), Expect = 1e-53, Method: Compositional matrix adjust.
Identities = 191/702 (27%), Positives = 298/702 (42%), Gaps = 68/702 (9%)
Query: 1 MYVIKRDGRKEPVRFDKITARLKKLSYGLSKEHCDPVLVAQKVCAGVYKGVTTTQLDELA 60
+ V KRDG E + DKI L + GL V + + Y G+ T+ + E
Sbjct: 5 LLVTKRDGSTERINLDKIHRVLDWAAEGLHNVSISQVELRSHI--QFYDGIKTSDIHETI 62
Query: 61 AETAAAM-TVNHPDYALLAGRVAVSNLHKITKNSFSETIKDMYNYYNK--RSGKKASLVA 117
+ AA + + + PDY LA R+A+ +L K F +Y++ K GK + +
Sbjct: 63 IKAAADLISRDAPDYQYLAARLAIFHLRKKAYGQFEPPA--LYDHVVKMVEMGKYDNHLL 120
Query: 118 DDVYEIIMKNAACLDGAIIXXXXXXXXXXXXKTLERSYLL--KMDSRVVERPQHMLMRVS 175
+D E K +D I K LE YL+ ++ + E Q + + V+
Sbjct: 121 EDYTEEEFKQ---MDTFIDHDRDMTFSYAAVKQLEGKYLVQNRVTGEIYESAQFLYILVA 177
Query: 176 VGIHKD-DTDSAL----KTYHLMSQHWFTHATPTLFNAGTPQPQLSSCFLL-CMKDDSIE 229
+ + ++ L + Y +S + TP + TP Q SSC L+ C DS++
Sbjct: 178 ACLFSNYPRETRLQYVKRFYDAVSTFKISLPTPIMSGVRTPTRQFSSCVLIEC--GDSLD 235
Query: 230 GIYDTLKKCAIISKSAGGIGLSIHNIRASGSYIHGTNGSSNGIVPMLQVFNDTARYVDQG 289
I T GIG++ IRA GS I G G +P + F + QG
Sbjct: 236 SINATSSAIVKYVSQRAGIGINAGRIRALGSPIRGGEAFHTGCIPFYKHFQTAVKSCSQG 295
Query: 290 GGKRKGAFAIYLEPWHADIFEFLDLRKNQGKEECRARDLFYALWVPDLFMERVRDDGKWS 349
G R GA ++ WH ++ L L+ N+G E R R + Y + + L R+ +
Sbjct: 296 G-VRGGAATLFYPMWHLEVESLLVLKNNRGVEGNRVRHMDYGVQINKLMYTRLLKGEDIT 354
Query: 350 LFCPSDASGLADSWGI---EFEHLYSQYEEEGRA-KMVISARKLWFEILNSQIETGTPYM 405
LF PSD GL D++ EFE LY++YE++ K + A +L+ ++ + TG Y+
Sbjct: 355 LFSPSDVPGLYDAFFADQEEFERLYTKYEKDDSIRKQRVKAVELFSLMMQERASTGRIYI 414
Query: 406 LFKDSCNRKSN-QQNLGTIKSSNLCTEIVEFSSP--------EETAVCNLASIALPRYVR 456
D CN S + ++ SNLC EI + P E A+C L++ L
Sbjct: 415 QNVDHCNTHSPFDPAIAPVRQSNLCLEIALPTKPLNDVNDENGEIALCTLSAFNL----- 469
Query: 457 EKGVPVQSNVSKLVGSRDSKNRLFDFERLAEVTKIITENLNKIIDVNHYPIETTRRSNLR 516
+ + + L E+ + L+ ++D YPI +R +
Sbjct: 470 --------------------GAINNLDELEELAILAVRALDALLDYQDYPIPAAKRGAMG 509
Query: 517 HRPIGIGIQGLADTFILLGLPFESPEAQQLNKDIFETIYYHALKASAELAVKDGPYETYF 576
R +GIG+ A G + A L FE I Y+ LKAS ELA + G +
Sbjct: 510 RRTLGIGVINFAYYLAKHGKRYSDGSANNLTHKTFEAIQYYLLKASNELAKEQGACPWFN 569
Query: 577 GSPMSKGILQVDMWN------ITPSDRWDWSSLREMISKNGVRNSLLVAPMPTASTSQIL 630
+ +KGIL +D + +DW +LRE I +G+RNS L A MP+ ++SQI
Sbjct: 570 ETTYAKGILPIDTYKKDLDTIANEPLHYDWEALRESIKTHGLRNSTLSALMPSETSSQIS 629
Query: 631 GNNECFEPYTSNIYTRRVLSGEF--IVVNKHLLKDLTELGLW 670
EP + + G +V + L D EL LW
Sbjct: 630 NATNGIEPPRGYVSIKASKDGILRQVVPDYEHLHDAYEL-LW 670
>pdb|3R1R|A Chain A, Ribonucleotide Reductase R1 Protein With Amppnp Occupying
The Activity Site From Escherichia Coli
pdb|3R1R|B Chain B, Ribonucleotide Reductase R1 Protein With Amppnp Occupying
The Activity Site From Escherichia Coli
pdb|3R1R|C Chain C, Ribonucleotide Reductase R1 Protein With Amppnp Occupying
The Activity Site From Escherichia Coli
pdb|2R1R|A Chain A, Ribonucleotide Reductase R1 Protein With Dttp Occupying
The Specificity Site From Escherichia Coli
pdb|2R1R|B Chain B, Ribonucleotide Reductase R1 Protein With Dttp Occupying
The Specificity Site From Escherichia Coli
pdb|2R1R|C Chain C, Ribonucleotide Reductase R1 Protein With Dttp Occupying
The Specificity Site From Escherichia Coli
pdb|2X0X|A Chain A, Ribonucleotide Reductase R1 Subunit Of E. Coli To 2.3 A
Resolution
pdb|2X0X|B Chain B, Ribonucleotide Reductase R1 Subunit Of E. Coli To 2.3 A
Resolution
pdb|2X0X|C Chain C, Ribonucleotide Reductase R1 Subunit Of E. Coli To 2.3 A
Resolution
pdb|3UUS|A Chain A, Crystal Structure Of The Datp Inhibited E. Coli Class Ia
Ribonucleotide Reductase Complex
pdb|3UUS|B Chain B, Crystal Structure Of The Datp Inhibited E. Coli Class Ia
Ribonucleotide Reductase Complex
pdb|3UUS|C Chain C, Crystal Structure Of The Datp Inhibited E. Coli Class Ia
Ribonucleotide Reductase Complex
pdb|3UUS|D Chain D, Crystal Structure Of The Datp Inhibited E. Coli Class Ia
Ribonucleotide Reductase Complex
pdb|4ERM|A Chain A, Crystal Structure Of The Datp Inhibited E. Coli Class Ia
Ribonucleotide Reductase Complex At 4 Angstroms
Resolution
pdb|4ERM|B Chain B, Crystal Structure Of The Datp Inhibited E. Coli Class Ia
Ribonucleotide Reductase Complex At 4 Angstroms
Resolution
pdb|4ERM|C Chain C, Crystal Structure Of The Datp Inhibited E. Coli Class Ia
Ribonucleotide Reductase Complex At 4 Angstroms
Resolution
pdb|4ERM|D Chain D, Crystal Structure Of The Datp Inhibited E. Coli Class Ia
Ribonucleotide Reductase Complex At 4 Angstroms
Resolution
pdb|4ERP|A Chain A, Crystal Structure Of A Gemcitabine-Diphosphate Inhibited
E. Coli Class Ia Ribonucleotide Reductase Complex
pdb|4ERP|B Chain B, Crystal Structure Of A Gemcitabine-Diphosphate Inhibited
E. Coli Class Ia Ribonucleotide Reductase Complex
pdb|4ERP|C Chain C, Crystal Structure Of A Gemcitabine-Diphosphate Inhibited
E. Coli Class Ia Ribonucleotide Reductase Complex
pdb|4ERP|D Chain D, Crystal Structure Of A Gemcitabine-Diphosphate Inhibited
E. Coli Class Ia Ribonucleotide Reductase Complex
Length = 761
Score = 208 bits (529), Expect = 1e-53, Method: Compositional matrix adjust.
Identities = 183/668 (27%), Positives = 286/668 (42%), Gaps = 65/668 (9%)
Query: 1 MYVIKRDGRKEPVRFDKITARLKKLSYGLSKEHCDPVLVAQKVCAGVYKGVTTTQLDELA 60
+ V KRDG E + DKI L + GL V + + Y G+ T+ + E
Sbjct: 5 LLVTKRDGSTERINLDKIHRVLDWAAEGLHNVSISQVELRSHI--QFYDGIKTSDIHETI 62
Query: 61 AETAAAM-TVNHPDYALLAGRVAVSNLHKITKNSFSETIKDMYNYYNK--RSGKKASLVA 117
+ AA + + + PDY LA R+A+ +L K F +Y++ K GK + +
Sbjct: 63 IKAAADLISRDAPDYQYLAARLAIFHLRKKAYGQFEPPA--LYDHVVKMVEMGKYDNHLL 120
Query: 118 DDVYEIIMKNAACLDGAIIXXXXXXXXXXXXKTLERSYLL--KMDSRVVERPQHMLMRVS 175
+D E K +D I K LE YL+ ++ + E Q + + V+
Sbjct: 121 EDYTEEEFKQ---MDTFIDHDRDMTFSYAAVKQLEGKYLVQNRVTGEIYESAQFLYILVA 177
Query: 176 VGIHKD-DTDSAL----KTYHLMSQHWFTHATPTLFNAGTPQPQLSSCFLL-CMKDDSIE 229
+ + ++ L + Y +S + TP + TP Q SSC L+ C DS++
Sbjct: 178 ACLFSNYPRETRLQYVKRFYDAVSTFKISLPTPIMSGVRTPTRQFSSCVLIEC--GDSLD 235
Query: 230 GIYDTLKKCAIISKSAGGIGLSIHNIRASGSYIHGTNGSSNGIVPMLQVFNDTARYVDQG 289
I T GIG++ IRA GS I G G +P + F + QG
Sbjct: 236 SINATSSAIVKYVSQRAGIGINAGRIRALGSPIRGGEAFHTGCIPFYKHFQTAVKSCSQG 295
Query: 290 GGKRKGAFAIYLEPWHADIFEFLDLRKNQGKEECRARDLFYALWVPDLFMERVRDDGKWS 349
G R GA ++ WH ++ L L+ N+G E R R + Y + + L R+ +
Sbjct: 296 G-VRGGAATLFYPMWHLEVESLLVLKNNRGVEGNRVRHMDYGVQINKLMYTRLLKGEDIT 354
Query: 350 LFCPSDASGLADSWGI---EFEHLYSQYEEEGRA-KMVISARKLWFEILNSQIETGTPYM 405
LF PSD GL D++ EFE LY++YE++ K + A +L+ ++ + TG Y+
Sbjct: 355 LFSPSDVPGLYDAFFADQEEFERLYTKYEKDDSIRKQRVKAVELFSLMMQERASTGRIYI 414
Query: 406 LFKDSCNRKSN-QQNLGTIKSSNLCTEIVEFSSP--------EETAVCNLASIALPRYVR 456
D CN S + ++ SNLC EI + P E A+C L++ L
Sbjct: 415 QNVDHCNTHSPFDPAIAPVRQSNLCLEIALPTKPLNDVNDENGEIALCTLSAFNL----- 469
Query: 457 EKGVPVQSNVSKLVGSRDSKNRLFDFERLAEVTKIITENLNKIIDVNHYPIETTRRSNLR 516
+ + + L E+ + L+ ++D YPI +R +
Sbjct: 470 --------------------GAINNLDELEELAILAVRALDALLDYQDYPIPAAKRGAMG 509
Query: 517 HRPIGIGIQGLADTFILLGLPFESPEAQQLNKDIFETIYYHALKASAELAVKDGPYETYF 576
R +GIG+ A G + A L FE I Y+ LKAS ELA + G +
Sbjct: 510 RRTLGIGVINFAYYLAKHGKRYSDGSANNLTHKTFEAIQYYLLKASNELAKEQGACPWFN 569
Query: 577 GSPMSKGILQVDMWN------ITPSDRWDWSSLREMISKNGVRNSLLVAPMPTASTSQIL 630
+ +KGIL +D + +DW +LRE I +G+RNS L A MP+ ++SQI
Sbjct: 570 ETTYAKGILPIDTYKKDLDTIANEPLHYDWEALRESIKTHGLRNSTLSALMPSETSSQIS 629
Query: 631 GNNECFEP 638
EP
Sbjct: 630 NATNGIEP 637
>pdb|2XAW|A Chain A, Ribonucleotide Reductase Y730no2y And Y731f Modified R1
Subunit Of E. Coli
pdb|2XAW|B Chain B, Ribonucleotide Reductase Y730no2y And Y731f Modified R1
Subunit Of E. Coli
pdb|2XAW|C Chain C, Ribonucleotide Reductase Y730no2y And Y731f Modified R1
Subunit Of E. Coli
Length = 761
Score = 208 bits (529), Expect = 1e-53, Method: Compositional matrix adjust.
Identities = 183/668 (27%), Positives = 286/668 (42%), Gaps = 65/668 (9%)
Query: 1 MYVIKRDGRKEPVRFDKITARLKKLSYGLSKEHCDPVLVAQKVCAGVYKGVTTTQLDELA 60
+ V KRDG E + DKI L + GL V + + Y G+ T+ + E
Sbjct: 5 LLVTKRDGSTERINLDKIHRVLDWAAEGLHNVSISQVELRSHI--QFYDGIKTSDIHETI 62
Query: 61 AETAAAM-TVNHPDYALLAGRVAVSNLHKITKNSFSETIKDMYNYYNK--RSGKKASLVA 117
+ AA + + + PDY LA R+A+ +L K F +Y++ K GK + +
Sbjct: 63 IKAAADLISRDAPDYQYLAARLAIFHLRKKAYGQFEPPA--LYDHVVKMVEMGKYDNHLL 120
Query: 118 DDVYEIIMKNAACLDGAIIXXXXXXXXXXXXKTLERSYLL--KMDSRVVERPQHMLMRVS 175
+D E K +D I K LE YL+ ++ + E Q + + V+
Sbjct: 121 EDYTEEEFKQ---MDTFIDHDRDMTFSYAAVKQLEGKYLVQNRVTGEIYESAQFLYILVA 177
Query: 176 VGIHKD-DTDSAL----KTYHLMSQHWFTHATPTLFNAGTPQPQLSSCFLL-CMKDDSIE 229
+ + ++ L + Y +S + TP + TP Q SSC L+ C DS++
Sbjct: 178 ACLFSNYPRETRLQYVKRFYDAVSTFKISLPTPIMSGVRTPTRQFSSCVLIEC--GDSLD 235
Query: 230 GIYDTLKKCAIISKSAGGIGLSIHNIRASGSYIHGTNGSSNGIVPMLQVFNDTARYVDQG 289
I T GIG++ IRA GS I G G +P + F + QG
Sbjct: 236 SINATSSAIVKYVSQRAGIGINAGRIRALGSPIRGGEAFHTGCIPFYKHFQTAVKSCSQG 295
Query: 290 GGKRKGAFAIYLEPWHADIFEFLDLRKNQGKEECRARDLFYALWVPDLFMERVRDDGKWS 349
G R GA ++ WH ++ L L+ N+G E R R + Y + + L R+ +
Sbjct: 296 G-VRGGAATLFYPMWHLEVESLLVLKNNRGVEGNRVRHMDYGVQINKLMYTRLLKGEDIT 354
Query: 350 LFCPSDASGLADSWGI---EFEHLYSQYEEEGRA-KMVISARKLWFEILNSQIETGTPYM 405
LF PSD GL D++ EFE LY++YE++ K + A +L+ ++ + TG Y+
Sbjct: 355 LFSPSDVPGLYDAFFADQEEFERLYTKYEKDDSIRKQRVKAVELFSLMMQERASTGRIYI 414
Query: 406 LFKDSCNRKSN-QQNLGTIKSSNLCTEIVEFSSP--------EETAVCNLASIALPRYVR 456
D CN S + ++ SNLC EI + P E A+C L++ L
Sbjct: 415 QNVDHCNTHSPFDPAIAPVRQSNLCLEIALPTKPLNDVNDENGEIALCTLSAFNL----- 469
Query: 457 EKGVPVQSNVSKLVGSRDSKNRLFDFERLAEVTKIITENLNKIIDVNHYPIETTRRSNLR 516
+ + + L E+ + L+ ++D YPI +R +
Sbjct: 470 --------------------GAINNLDELEELAILAVRALDALLDYQDYPIPAAKRGAMG 509
Query: 517 HRPIGIGIQGLADTFILLGLPFESPEAQQLNKDIFETIYYHALKASAELAVKDGPYETYF 576
R +GIG+ A G + A L FE I Y+ LKAS ELA + G +
Sbjct: 510 RRTLGIGVINFAYYLAKHGKRYSDGSANNLTHKTFEAIQYYLLKASNELAKEQGACPWFN 569
Query: 577 GSPMSKGILQVDMWN------ITPSDRWDWSSLREMISKNGVRNSLLVAPMPTASTSQIL 630
+ +KGIL +D + +DW +LRE I +G+RNS L A MP+ ++SQI
Sbjct: 570 ETTYAKGILPIDTYKKDLDTIANEPLHYDWEALRESIKTHGLRNSTLSALMPSETSSQIS 629
Query: 631 GNNECFEP 638
EP
Sbjct: 630 NATNGIEP 637
>pdb|2XAX|A Chain A, Ribonucleotide Reductase Y730no2y And Y731a Modified R1
Subunit Of E. Coli
pdb|2XAX|B Chain B, Ribonucleotide Reductase Y730no2y And Y731a Modified R1
Subunit Of E. Coli
pdb|2XAX|C Chain C, Ribonucleotide Reductase Y730no2y And Y731a Modified R1
Subunit Of E. Coli
Length = 761
Score = 208 bits (529), Expect = 1e-53, Method: Compositional matrix adjust.
Identities = 183/668 (27%), Positives = 286/668 (42%), Gaps = 65/668 (9%)
Query: 1 MYVIKRDGRKEPVRFDKITARLKKLSYGLSKEHCDPVLVAQKVCAGVYKGVTTTQLDELA 60
+ V KRDG E + DKI L + GL V + + Y G+ T+ + E
Sbjct: 5 LLVTKRDGSTERINLDKIHRVLDWAAEGLHNVSISQVELRSHI--QFYDGIKTSDIHETI 62
Query: 61 AETAAAM-TVNHPDYALLAGRVAVSNLHKITKNSFSETIKDMYNYYNK--RSGKKASLVA 117
+ AA + + + PDY LA R+A+ +L K F +Y++ K GK + +
Sbjct: 63 IKAAADLISRDAPDYQYLAARLAIFHLRKKAYGQFEPPA--LYDHVVKMVEMGKYDNHLL 120
Query: 118 DDVYEIIMKNAACLDGAIIXXXXXXXXXXXXKTLERSYLL--KMDSRVVERPQHMLMRVS 175
+D E K +D I K LE YL+ ++ + E Q + + V+
Sbjct: 121 EDYTEEEFKQ---MDTFIDHDRDMTFSYAAVKQLEGKYLVQNRVTGEIYESAQFLYILVA 177
Query: 176 VGIHKD-DTDSAL----KTYHLMSQHWFTHATPTLFNAGTPQPQLSSCFLL-CMKDDSIE 229
+ + ++ L + Y +S + TP + TP Q SSC L+ C DS++
Sbjct: 178 ACLFSNYPRETRLQYVKRFYDAVSTFKISLPTPIMSGVRTPTRQFSSCVLIEC--GDSLD 235
Query: 230 GIYDTLKKCAIISKSAGGIGLSIHNIRASGSYIHGTNGSSNGIVPMLQVFNDTARYVDQG 289
I T GIG++ IRA GS I G G +P + F + QG
Sbjct: 236 SINATSSAIVKYVSQRAGIGINAGRIRALGSPIRGGEAFHTGCIPFYKHFQTAVKSCSQG 295
Query: 290 GGKRKGAFAIYLEPWHADIFEFLDLRKNQGKEECRARDLFYALWVPDLFMERVRDDGKWS 349
G R GA ++ WH ++ L L+ N+G E R R + Y + + L R+ +
Sbjct: 296 G-VRGGAATLFYPMWHLEVESLLVLKNNRGVEGNRVRHMDYGVQINKLMYTRLLKGEDIT 354
Query: 350 LFCPSDASGLADSWGI---EFEHLYSQYEEEGRA-KMVISARKLWFEILNSQIETGTPYM 405
LF PSD GL D++ EFE LY++YE++ K + A +L+ ++ + TG Y+
Sbjct: 355 LFSPSDVPGLYDAFFADQEEFERLYTKYEKDDSIRKQRVKAVELFSLMMQERASTGRIYI 414
Query: 406 LFKDSCNRKSN-QQNLGTIKSSNLCTEIVEFSSP--------EETAVCNLASIALPRYVR 456
D CN S + ++ SNLC EI + P E A+C L++ L
Sbjct: 415 QNVDHCNTHSPFDPAIAPVRQSNLCLEIALPTKPLNDVNDENGEIALCTLSAFNL----- 469
Query: 457 EKGVPVQSNVSKLVGSRDSKNRLFDFERLAEVTKIITENLNKIIDVNHYPIETTRRSNLR 516
+ + + L E+ + L+ ++D YPI +R +
Sbjct: 470 --------------------GAINNLDELEELAILAVRALDALLDYQDYPIPAAKRGAMG 509
Query: 517 HRPIGIGIQGLADTFILLGLPFESPEAQQLNKDIFETIYYHALKASAELAVKDGPYETYF 576
R +GIG+ A G + A L FE I Y+ LKAS ELA + G +
Sbjct: 510 RRTLGIGVINFAYYLAKHGKRYSDGSANNLTHKTFEAIQYYLLKASNELAKEQGACPWFN 569
Query: 577 GSPMSKGILQVDMWN------ITPSDRWDWSSLREMISKNGVRNSLLVAPMPTASTSQIL 630
+ +KGIL +D + +DW +LRE I +G+RNS L A MP+ ++SQI
Sbjct: 570 ETTYAKGILPIDTYKKDLDTIANEPLHYDWEALRESIKTHGLRNSTLSALMPSETSSQIS 629
Query: 631 GNNECFEP 638
EP
Sbjct: 630 NATNGIEP 637
>pdb|2XAV|A Chain A, Ribonucleotide Reductase Y731no2y And Y730f Modified R1
Subunit Of E. Coli
pdb|2XAV|B Chain B, Ribonucleotide Reductase Y731no2y And Y730f Modified R1
Subunit Of E. Coli
pdb|2XAV|C Chain C, Ribonucleotide Reductase Y731no2y And Y730f Modified R1
Subunit Of E. Coli
Length = 761
Score = 208 bits (529), Expect = 1e-53, Method: Compositional matrix adjust.
Identities = 183/668 (27%), Positives = 286/668 (42%), Gaps = 65/668 (9%)
Query: 1 MYVIKRDGRKEPVRFDKITARLKKLSYGLSKEHCDPVLVAQKVCAGVYKGVTTTQLDELA 60
+ V KRDG E + DKI L + GL V + + Y G+ T+ + E
Sbjct: 5 LLVTKRDGSTERINLDKIHRVLDWAAEGLHNVSISQVELRSHI--QFYDGIKTSDIHETI 62
Query: 61 AETAAAM-TVNHPDYALLAGRVAVSNLHKITKNSFSETIKDMYNYYNK--RSGKKASLVA 117
+ AA + + + PDY LA R+A+ +L K F +Y++ K GK + +
Sbjct: 63 IKAAADLISRDAPDYQYLAARLAIFHLRKKAYGQFEPPA--LYDHVVKMVEMGKYDNHLL 120
Query: 118 DDVYEIIMKNAACLDGAIIXXXXXXXXXXXXKTLERSYLL--KMDSRVVERPQHMLMRVS 175
+D E K +D I K LE YL+ ++ + E Q + + V+
Sbjct: 121 EDYTEEEFKQ---MDTFIDHDRDMTFSYAAVKQLEGKYLVQNRVTGEIYESAQFLYILVA 177
Query: 176 VGIHKD-DTDSAL----KTYHLMSQHWFTHATPTLFNAGTPQPQLSSCFLL-CMKDDSIE 229
+ + ++ L + Y +S + TP + TP Q SSC L+ C DS++
Sbjct: 178 ACLFSNYPRETRLQYVKRFYDAVSTFKISLPTPIMSGVRTPTRQFSSCVLIEC--GDSLD 235
Query: 230 GIYDTLKKCAIISKSAGGIGLSIHNIRASGSYIHGTNGSSNGIVPMLQVFNDTARYVDQG 289
I T GIG++ IRA GS I G G +P + F + QG
Sbjct: 236 SINATSSAIVKYVSQRAGIGINAGRIRALGSPIRGGEAFHTGCIPFYKHFQTAVKSCSQG 295
Query: 290 GGKRKGAFAIYLEPWHADIFEFLDLRKNQGKEECRARDLFYALWVPDLFMERVRDDGKWS 349
G R GA ++ WH ++ L L+ N+G E R R + Y + + L R+ +
Sbjct: 296 G-VRGGAATLFYPMWHLEVESLLVLKNNRGVEGNRVRHMDYGVQINKLMYTRLLKGEDIT 354
Query: 350 LFCPSDASGLADSWGI---EFEHLYSQYEEEGRA-KMVISARKLWFEILNSQIETGTPYM 405
LF PSD GL D++ EFE LY++YE++ K + A +L+ ++ + TG Y+
Sbjct: 355 LFSPSDVPGLYDAFFADQEEFERLYTKYEKDDSIRKQRVKAVELFSLMMQERASTGRIYI 414
Query: 406 LFKDSCNRKSN-QQNLGTIKSSNLCTEIVEFSSP--------EETAVCNLASIALPRYVR 456
D CN S + ++ SNLC EI + P E A+C L++ L
Sbjct: 415 QNVDHCNTHSPFDPAIAPVRQSNLCLEIALPTKPLNDVNDENGEIALCTLSAFNL----- 469
Query: 457 EKGVPVQSNVSKLVGSRDSKNRLFDFERLAEVTKIITENLNKIIDVNHYPIETTRRSNLR 516
+ + + L E+ + L+ ++D YPI +R +
Sbjct: 470 --------------------GAINNLDELEELAILAVRALDALLDYQDYPIPAAKRGAMG 509
Query: 517 HRPIGIGIQGLADTFILLGLPFESPEAQQLNKDIFETIYYHALKASAELAVKDGPYETYF 576
R +GIG+ A G + A L FE I Y+ LKAS ELA + G +
Sbjct: 510 RRTLGIGVINFAYYLAKHGKRYSDGSANNLTHKTFEAIQYYLLKASNELAKEQGACPWFN 569
Query: 577 GSPMSKGILQVDMWN------ITPSDRWDWSSLREMISKNGVRNSLLVAPMPTASTSQIL 630
+ +KGIL +D + +DW +LRE I +G+RNS L A MP+ ++SQI
Sbjct: 570 ETTYAKGILPIDTYKKDLDTIANEPLHYDWEALRESIKTHGLRNSTLSALMPSETSSQIS 629
Query: 631 GNNECFEP 638
EP
Sbjct: 630 NATNGIEP 637
>pdb|1R1R|A Chain A, Ribonucleotide Reductase R1 Protein Mutant Y730f With A
Reduced Active Site From Escherichia Coli
pdb|1R1R|B Chain B, Ribonucleotide Reductase R1 Protein Mutant Y730f With A
Reduced Active Site From Escherichia Coli
pdb|1R1R|C Chain C, Ribonucleotide Reductase R1 Protein Mutant Y730f With A
Reduced Active Site From Escherichia Coli
Length = 761
Score = 208 bits (529), Expect = 1e-53, Method: Compositional matrix adjust.
Identities = 183/668 (27%), Positives = 286/668 (42%), Gaps = 65/668 (9%)
Query: 1 MYVIKRDGRKEPVRFDKITARLKKLSYGLSKEHCDPVLVAQKVCAGVYKGVTTTQLDELA 60
+ V KRDG E + DKI L + GL V + + Y G+ T+ + E
Sbjct: 5 LLVTKRDGSTERINLDKIHRVLDWAAEGLHNVSISQVELRSHI--QFYDGIKTSDIHETI 62
Query: 61 AETAAAM-TVNHPDYALLAGRVAVSNLHKITKNSFSETIKDMYNYYNK--RSGKKASLVA 117
+ AA + + + PDY LA R+A+ +L K F +Y++ K GK + +
Sbjct: 63 IKAAADLISRDAPDYQYLAARLAIFHLRKKAYGQFEPPA--LYDHVVKMVEMGKYDNHLL 120
Query: 118 DDVYEIIMKNAACLDGAIIXXXXXXXXXXXXKTLERSYLL--KMDSRVVERPQHMLMRVS 175
+D E K +D I K LE YL+ ++ + E Q + + V+
Sbjct: 121 EDYTEEEFKQ---MDTFIDHDRDMTFSYAAVKQLEGKYLVQNRVTGEIYESAQFLYILVA 177
Query: 176 VGIHKD-DTDSAL----KTYHLMSQHWFTHATPTLFNAGTPQPQLSSCFLL-CMKDDSIE 229
+ + ++ L + Y +S + TP + TP Q SSC L+ C DS++
Sbjct: 178 ACLFSNYPRETRLQYVKRFYDAVSTFKISLPTPIMSGVRTPTRQFSSCVLIEC--GDSLD 235
Query: 230 GIYDTLKKCAIISKSAGGIGLSIHNIRASGSYIHGTNGSSNGIVPMLQVFNDTARYVDQG 289
I T GIG++ IRA GS I G G +P + F + QG
Sbjct: 236 SINATSSAIVKYVSQRAGIGINAGRIRALGSPIRGGEAFHTGCIPFYKHFQTAVKSCSQG 295
Query: 290 GGKRKGAFAIYLEPWHADIFEFLDLRKNQGKEECRARDLFYALWVPDLFMERVRDDGKWS 349
G R GA ++ WH ++ L L+ N+G E R R + Y + + L R+ +
Sbjct: 296 G-VRGGAATLFYPMWHLEVESLLVLKNNRGVEGNRVRHMDYGVQINKLMYTRLLKGEDIT 354
Query: 350 LFCPSDASGLADSWGI---EFEHLYSQYEEEGRA-KMVISARKLWFEILNSQIETGTPYM 405
LF PSD GL D++ EFE LY++YE++ K + A +L+ ++ + TG Y+
Sbjct: 355 LFSPSDVPGLYDAFFADQEEFERLYTKYEKDDSIRKQRVKAVELFSLMMQERASTGRIYI 414
Query: 406 LFKDSCNRKSN-QQNLGTIKSSNLCTEIVEFSSP--------EETAVCNLASIALPRYVR 456
D CN S + ++ SNLC EI + P E A+C L++ L
Sbjct: 415 QNVDHCNTHSPFDPAIAPVRQSNLCLEIALPTKPLNDVNDENGEIALCTLSAFNL----- 469
Query: 457 EKGVPVQSNVSKLVGSRDSKNRLFDFERLAEVTKIITENLNKIIDVNHYPIETTRRSNLR 516
+ + + L E+ + L+ ++D YPI +R +
Sbjct: 470 --------------------GAINNLDELEELAILAVRALDALLDYQDYPIPAAKRGAMG 509
Query: 517 HRPIGIGIQGLADTFILLGLPFESPEAQQLNKDIFETIYYHALKASAELAVKDGPYETYF 576
R +GIG+ A G + A L FE I Y+ LKAS ELA + G +
Sbjct: 510 RRTLGIGVINFAYYLAKHGKRYSDGSANNLTHKTFEAIQYYLLKASNELAKEQGACPWFN 569
Query: 577 GSPMSKGILQVDMWN------ITPSDRWDWSSLREMISKNGVRNSLLVAPMPTASTSQIL 630
+ +KGIL +D + +DW +LRE I +G+RNS L A MP+ ++SQI
Sbjct: 570 ETTYAKGILPIDTYKKDLDTIANEPLHYDWEALRESIKTHGLRNSTLSALMPSETSSQIS 629
Query: 631 GNNECFEP 638
EP
Sbjct: 630 NATNGIEP 637
>pdb|1RLR|A Chain A, Structure Of Ribonucleotide Reductase Protein R1
Length = 761
Score = 207 bits (528), Expect = 2e-53, Method: Compositional matrix adjust.
Identities = 182/668 (27%), Positives = 283/668 (42%), Gaps = 65/668 (9%)
Query: 1 MYVIKRDGRKEPVRFDKITARLKKLSYGLSKEHCDPVLVAQKVCAGVYKGVTTTQLDELA 60
+ V KRDG E + DKI L + GL V + + Y G+ T+ + E
Sbjct: 5 LLVTKRDGSTERINLDKIHRVLDWAAEGLHNVSISQVELRSHI--QFYDGIKTSDIHETI 62
Query: 61 AETAAAM-TVNHPDYALLAGRVAVSNLHKITKNSFSETIKDMYNYYNK--RSGKKASLVA 117
+ AA + + + PDY LA R+A+ +L K F +Y++ K GK + +
Sbjct: 63 IKAAADLISRDAPDYQYLAARLAIFHLRKKAYGQFEPPA--LYDHVVKMVEMGKYDNHLL 120
Query: 118 DDVYEIIMKNAACLDGAIIXXXXXXXXXXXXKTLERSYLL--KMDSRVVERPQHMLMRVS 175
+D E K +D I K LE YL+ ++ + E Q + + V+
Sbjct: 121 EDYTEEEFKQ---MDTFIDHDRDMTFSYAAVKQLEGKYLVQNRVTGEIYESAQFLYILVA 177
Query: 176 VGIHKD-----DTDSALKTYHLMSQHWFTHATPTLFNAGTPQPQLSSCFLL-CMKDDSIE 229
+ + + Y +S + TP + TP Q SSC L+ C DS++
Sbjct: 178 ACLFSNYPRETRLQYVKRFYDAVSTFKISLPTPIMSGVRTPTRQFSSCVLIEC--GDSLD 235
Query: 230 GIYDTLKKCAIISKSAGGIGLSIHNIRASGSYIHGTNGSSNGIVPMLQVFNDTARYVDQG 289
I T GIG++ IRA GS I G G +P + F + QG
Sbjct: 236 SINATSSAIVKYVSQRAGIGINAGRIRALGSPIRGGEAFHTGCIPFYKHFQTAVKSCSQG 295
Query: 290 GGKRKGAFAIYLEPWHADIFEFLDLRKNQGKEECRARDLFYALWVPDLFMERVRDDGKWS 349
G R GA ++ WH ++ L L+ N+G E R R + Y + + L R+ +
Sbjct: 296 G-VRGGAATLFYPMWHLEVESLLVLKNNRGVEGNRVRHMDYGVQINKLMYTRLLKGEDIT 354
Query: 350 LFCPSDASGLADSWGI---EFEHLYSQYEEEGRA-KMVISARKLWFEILNSQIETGTPYM 405
LF PSD GL D++ EFE LY++YE++ K + A +L+ ++ + TG Y+
Sbjct: 355 LFSPSDVPGLYDAFFADQEEFERLYTKYEKDDSIRKQRVKAVELFSLMMQERASTGRIYI 414
Query: 406 LFKDSCNRKSN-QQNLGTIKSSNLCTEIVEFSSP--------EETAVCNLASIALPRYVR 456
D CN S + ++ SNLC EI + P E A+C L++ L
Sbjct: 415 QNVDHCNTHSPFDPAIAPVRQSNLCLEIALPTKPLNDVNDENGEIALCTLSAFNL----- 469
Query: 457 EKGVPVQSNVSKLVGSRDSKNRLFDFERLAEVTKIITENLNKIIDVNHYPIETTRRSNLR 516
+ + + L E+ + L+ ++D YPI +R +
Sbjct: 470 --------------------GAINNLDELDELAILAVRALDALLDYQDYPIPAAKRGAMG 509
Query: 517 HRPIGIGIQGLADTFILLGLPFESPEAQQLNKDIFETIYYHALKASAELAVKDGPYETYF 576
R +GIG+ A G + A L FE I Y+ LKAS ELA + G +
Sbjct: 510 RRTLGIGVINFAYYLAKHGKRYSDGSANNLTHKTFEAIQYYLLKASNELAKEQGACPWFN 569
Query: 577 GSPMSKGILQVDMWN------ITPSDRWDWSSLREMISKNGVRNSLLVAPMPTASTSQIL 630
+ +KGIL +D + +DW +LRE I +G+RNS L A MP+ ++SQI
Sbjct: 570 ETTYAKGILPIDTYKKDLDTIANEPLHYDWEALRESIKTHGLRNSTLSALMPSETSSQIS 629
Query: 631 GNNECFEP 638
EP
Sbjct: 630 NATNGIEP 637
>pdb|7R1R|A Chain A, Ribonucleotide Reductase E441q Mutant R1 Protein From
Escherichia Coli
pdb|7R1R|B Chain B, Ribonucleotide Reductase E441q Mutant R1 Protein From
Escherichia Coli
pdb|7R1R|C Chain C, Ribonucleotide Reductase E441q Mutant R1 Protein From
Escherichia Coli
Length = 761
Score = 207 bits (526), Expect = 3e-53, Method: Compositional matrix adjust.
Identities = 181/668 (27%), Positives = 283/668 (42%), Gaps = 65/668 (9%)
Query: 1 MYVIKRDGRKEPVRFDKITARLKKLSYGLSKEHCDPVLVAQKVCAGVYKGVTTTQLDELA 60
+ V KRDG E + DKI L + GL V + + Y G+ T+ + E
Sbjct: 5 LLVTKRDGSTERINLDKIHRVLDWAAEGLHNVSISQVELRSHI--QFYDGIKTSDIHETI 62
Query: 61 AETAAAM-TVNHPDYALLAGRVAVSNLHKITKNSFSETIKDMYNYYNK--RSGKKASLVA 117
+ AA + + + PDY LA R+A+ +L K F +Y++ K GK + +
Sbjct: 63 IKAAADLISRDAPDYQYLAARLAIFHLRKKAYGQFEPPA--LYDHVVKMVEMGKYDNHLL 120
Query: 118 DDVYEIIMKNAACLDGAIIXXXXXXXXXXXXKTLERSYLL--KMDSRVVERPQHMLMRVS 175
+D E K +D I K LE YL+ ++ + E Q + + V+
Sbjct: 121 EDYTEEEFKQ---MDTFIDHDRDMTFSYAAVKQLEGKYLVQNRVTGEIYESAQFLYILVA 177
Query: 176 VGIHKD-----DTDSALKTYHLMSQHWFTHATPTLFNAGTPQPQLSSCFLL-CMKDDSIE 229
+ + + Y +S + TP + TP Q SSC L+ C DS++
Sbjct: 178 ACLFSNYPRETRLQYVKRFYDAVSTFKISLPTPIMSGVRTPTRQFSSCVLIEC--GDSLD 235
Query: 230 GIYDTLKKCAIISKSAGGIGLSIHNIRASGSYIHGTNGSSNGIVPMLQVFNDTARYVDQG 289
I T GIG++ IRA GS I G G +P + F + QG
Sbjct: 236 SINATSSAIVKYVSQRAGIGINAGRIRALGSPIRGGEAFHTGCIPFYKHFQTAVKSCSQG 295
Query: 290 GGKRKGAFAIYLEPWHADIFEFLDLRKNQGKEECRARDLFYALWVPDLFMERVRDDGKWS 349
G R GA ++ WH ++ L L+ N+G E R R + Y + + L R+ +
Sbjct: 296 G-VRGGAATLFYPMWHLEVESLLVLKNNRGVEGNRVRHMDYGVQINKLMYTRLLKGEDIT 354
Query: 350 LFCPSDASGLADSWGI---EFEHLYSQYEEEGRA-KMVISARKLWFEILNSQIETGTPYM 405
LF PSD GL D++ EFE LY++YE++ K + A +L+ ++ + TG Y+
Sbjct: 355 LFSPSDVPGLYDAFFADQEEFERLYTKYEKDDSIRKQRVKAVELFSLMMQERASTGRIYI 414
Query: 406 LFKDSCNRKSN-QQNLGTIKSSNLCTEIVEFSSP--------EETAVCNLASIALPRYVR 456
D CN S + ++ SNLC +I + P E A+C L++ L
Sbjct: 415 QNVDHCNTHSPFDPAIAPVRQSNLCLQIALPTKPLNDVNDENGEIALCTLSAFNL----- 469
Query: 457 EKGVPVQSNVSKLVGSRDSKNRLFDFERLAEVTKIITENLNKIIDVNHYPIETTRRSNLR 516
+ + + L E+ + L+ ++D YPI +R +
Sbjct: 470 --------------------GAINNLDELEELAILAVRALDALLDYQDYPIPAAKRGAMG 509
Query: 517 HRPIGIGIQGLADTFILLGLPFESPEAQQLNKDIFETIYYHALKASAELAVKDGPYETYF 576
R +GIG+ A G + A L FE I Y+ LKAS ELA + G +
Sbjct: 510 RRTLGIGVINFAYYLAKHGKRYSDGSANNLTHKTFEAIQYYLLKASNELAKEQGACPWFN 569
Query: 577 GSPMSKGILQVDMWN------ITPSDRWDWSSLREMISKNGVRNSLLVAPMPTASTSQIL 630
+ +KGIL +D + +DW +LRE I +G+RNS L A MP+ ++SQI
Sbjct: 570 ETTYAKGILPIDTYKKDLDTIANEPLHYDWEALRESIKTHGLRNSTLSALMPSETSSQIS 629
Query: 631 GNNECFEP 638
EP
Sbjct: 630 NATNGIEP 637
>pdb|6R1R|A Chain A, Ribonucleotide Reductase E441d Mutant R1 Protein From
Escherichia Coli
pdb|6R1R|B Chain B, Ribonucleotide Reductase E441d Mutant R1 Protein From
Escherichia Coli
pdb|6R1R|C Chain C, Ribonucleotide Reductase E441d Mutant R1 Protein From
Escherichia Coli
Length = 761
Score = 206 bits (525), Expect = 3e-53, Method: Compositional matrix adjust.
Identities = 181/668 (27%), Positives = 283/668 (42%), Gaps = 65/668 (9%)
Query: 1 MYVIKRDGRKEPVRFDKITARLKKLSYGLSKEHCDPVLVAQKVCAGVYKGVTTTQLDELA 60
+ V KRDG E + DKI L + GL V + + Y G+ T+ + E
Sbjct: 5 LLVTKRDGSTERINLDKIHRVLDWAAEGLHNVSISQVELRSHI--QFYDGIKTSDIHETI 62
Query: 61 AETAAAM-TVNHPDYALLAGRVAVSNLHKITKNSFSETIKDMYNYYNK--RSGKKASLVA 117
+ AA + + + PDY LA R+A+ +L K F +Y++ K GK + +
Sbjct: 63 IKAAADLISRDAPDYQYLAARLAIFHLRKKAYGQFEPPA--LYDHVVKMVEMGKYDNHLL 120
Query: 118 DDVYEIIMKNAACLDGAIIXXXXXXXXXXXXKTLERSYLL--KMDSRVVERPQHMLMRVS 175
+D E K +D I K LE YL+ ++ + E Q + + V+
Sbjct: 121 EDYTEEEFKQ---MDTFIDHDRDMTFSYAAVKQLEGKYLVQNRVTGEIYESAQFLYILVA 177
Query: 176 VGIHKD-----DTDSALKTYHLMSQHWFTHATPTLFNAGTPQPQLSSCFLL-CMKDDSIE 229
+ + + Y +S + TP + TP Q SSC L+ C DS++
Sbjct: 178 ACLFSNYPRETRLQYVKRFYDAVSTFKISLPTPIMSGVRTPTRQFSSCVLIEC--GDSLD 235
Query: 230 GIYDTLKKCAIISKSAGGIGLSIHNIRASGSYIHGTNGSSNGIVPMLQVFNDTARYVDQG 289
I T GIG++ IRA GS I G G +P + F + QG
Sbjct: 236 SINATSSAIVKYVSQRAGIGINAGRIRALGSPIRGGEAFHTGCIPFYKHFQTAVKSCSQG 295
Query: 290 GGKRKGAFAIYLEPWHADIFEFLDLRKNQGKEECRARDLFYALWVPDLFMERVRDDGKWS 349
G R GA ++ WH ++ L L+ N+G E R R + Y + + L R+ +
Sbjct: 296 G-VRGGAATLFYPMWHLEVESLLVLKNNRGVEGNRVRHMDYGVQINKLMYTRLLKGEDIT 354
Query: 350 LFCPSDASGLADSWGI---EFEHLYSQYEEEGRA-KMVISARKLWFEILNSQIETGTPYM 405
LF PSD GL D++ EFE LY++YE++ K + A +L+ ++ + TG Y+
Sbjct: 355 LFSPSDVPGLYDAFFADQEEFERLYTKYEKDDSIRKQRVKAVELFSLMMQERASTGRIYI 414
Query: 406 LFKDSCNRKSN-QQNLGTIKSSNLCTEIVEFSSP--------EETAVCNLASIALPRYVR 456
D CN S + ++ SNLC +I + P E A+C L++ L
Sbjct: 415 QNVDHCNTHSPFDPAIAPVRQSNLCLDIALPTKPLNDVNDENGEIALCTLSAFNL----- 469
Query: 457 EKGVPVQSNVSKLVGSRDSKNRLFDFERLAEVTKIITENLNKIIDVNHYPIETTRRSNLR 516
+ + + L E+ + L+ ++D YPI +R +
Sbjct: 470 --------------------GAINNLDELEELAILAVRALDALLDYQDYPIPAAKRGAMG 509
Query: 517 HRPIGIGIQGLADTFILLGLPFESPEAQQLNKDIFETIYYHALKASAELAVKDGPYETYF 576
R +GIG+ A G + A L FE I Y+ LKAS ELA + G +
Sbjct: 510 RRTLGIGVINFAYYLAKHGKRYSDGSANNLTHKTFEAIQYYLLKASNELAKEQGACPWFN 569
Query: 577 GSPMSKGILQVDMWN------ITPSDRWDWSSLREMISKNGVRNSLLVAPMPTASTSQIL 630
+ +KGIL +D + +DW +LRE I +G+RNS L A MP+ ++SQI
Sbjct: 570 ETTYAKGILPIDTYKKDLDTIANEPLHYDWEALRESIKTHGLRNSTLSALMPSETSSQIS 629
Query: 631 GNNECFEP 638
EP
Sbjct: 630 NATNGIEP 637
>pdb|5R1R|A Chain A, Ribonucleotide Reductase E441a Mutant R1 Protein From
Escherichia Coli
pdb|5R1R|B Chain B, Ribonucleotide Reductase E441a Mutant R1 Protein From
Escherichia Coli
pdb|5R1R|C Chain C, Ribonucleotide Reductase E441a Mutant R1 Protein From
Escherichia Coli
Length = 761
Score = 206 bits (524), Expect = 5e-53, Method: Compositional matrix adjust.
Identities = 181/668 (27%), Positives = 282/668 (42%), Gaps = 65/668 (9%)
Query: 1 MYVIKRDGRKEPVRFDKITARLKKLSYGLSKEHCDPVLVAQKVCAGVYKGVTTTQLDELA 60
+ V KRDG E + DKI L + GL V + + Y G+ T+ + E
Sbjct: 5 LLVTKRDGSTERINLDKIHRVLDWAAEGLHNVSISQVELRSHI--QFYDGIKTSDIHETI 62
Query: 61 AETAAAM-TVNHPDYALLAGRVAVSNLHKITKNSFSETIKDMYNYYNK--RSGKKASLVA 117
+ AA + + + PDY LA R+A+ +L K F +Y++ K GK + +
Sbjct: 63 IKAAADLISRDAPDYQYLAARLAIFHLRKKAYGQFEPPA--LYDHVVKMVEMGKYDNHLL 120
Query: 118 DDVYEIIMKNAACLDGAIIXXXXXXXXXXXXKTLERSYLL--KMDSRVVERPQHMLMRVS 175
+D E K +D I K LE YL+ ++ + E Q + + V+
Sbjct: 121 EDYTEEEFKQ---MDTFIDHDRDMTFSYAAVKQLEGKYLVQNRVTGEIYESAQFLYILVA 177
Query: 176 VGIHKD-----DTDSALKTYHLMSQHWFTHATPTLFNAGTPQPQLSSCFLL-CMKDDSIE 229
+ + + Y +S + TP + TP Q SSC L+ C DS++
Sbjct: 178 ACLFSNYPRETRLQYVKRFYDAVSTFKISLPTPIMSGVRTPTRQFSSCVLIEC--GDSLD 235
Query: 230 GIYDTLKKCAIISKSAGGIGLSIHNIRASGSYIHGTNGSSNGIVPMLQVFNDTARYVDQG 289
I T GIG++ IRA GS I G G +P + F + QG
Sbjct: 236 SINATSSAIVKYVSQRAGIGINAGRIRALGSPIRGGEAFHTGCIPFYKHFQTAVKSCSQG 295
Query: 290 GGKRKGAFAIYLEPWHADIFEFLDLRKNQGKEECRARDLFYALWVPDLFMERVRDDGKWS 349
G R GA ++ WH ++ L L+ N+G E R R + Y + + L R+ +
Sbjct: 296 G-VRGGAATLFYPMWHLEVESLLVLKNNRGVEGNRVRHMDYGVQINKLMYTRLLKGEDIT 354
Query: 350 LFCPSDASGLADSWGI---EFEHLYSQYEEEGRA-KMVISARKLWFEILNSQIETGTPYM 405
LF PSD GL D++ EFE LY++YE++ K + A +L+ ++ + TG Y+
Sbjct: 355 LFSPSDVPGLYDAFFADQEEFERLYTKYEKDDSIRKQRVKAVELFSLMMQERASTGRIYI 414
Query: 406 LFKDSCNRKSN-QQNLGTIKSSNLCTEIVEFSSP--------EETAVCNLASIALPRYVR 456
D CN S + ++ SNLC I + P E A+C L++ L
Sbjct: 415 QNVDHCNTHSPFDPAIAPVRQSNLCLAIALPTKPLNDVNDENGEIALCTLSAFNL----- 469
Query: 457 EKGVPVQSNVSKLVGSRDSKNRLFDFERLAEVTKIITENLNKIIDVNHYPIETTRRSNLR 516
+ + + L E+ + L+ ++D YPI +R +
Sbjct: 470 --------------------GAINNLDELEELAILAVRALDALLDYQDYPIPAAKRGAMG 509
Query: 517 HRPIGIGIQGLADTFILLGLPFESPEAQQLNKDIFETIYYHALKASAELAVKDGPYETYF 576
R +GIG+ A G + A L FE I Y+ LKAS ELA + G +
Sbjct: 510 RRTLGIGVINFAYYLAKHGKRYSDGSANNLTHKTFEAIQYYLLKASNELAKEQGACPWFN 569
Query: 577 GSPMSKGILQVDMWN------ITPSDRWDWSSLREMISKNGVRNSLLVAPMPTASTSQIL 630
+ +KGIL +D + +DW +LRE I +G+RNS L A MP+ ++SQI
Sbjct: 570 ETTYAKGILPIDTYKKDLDTIANEPLHYDWEALRESIKTHGLRNSTLSALMPSETSSQIS 629
Query: 631 GNNECFEP 638
EP
Sbjct: 630 NATNGIEP 637
>pdb|2XAY|A Chain A, Ribonucleotide Reductase Y730no2y And C439a Modified R1
Subunit Of E. Coli
pdb|2XAY|B Chain B, Ribonucleotide Reductase Y730no2y And C439a Modified R1
Subunit Of E. Coli
pdb|2XAY|C Chain C, Ribonucleotide Reductase Y730no2y And C439a Modified R1
Subunit Of E. Coli
Length = 761
Score = 204 bits (519), Expect = 2e-52, Method: Compositional matrix adjust.
Identities = 182/668 (27%), Positives = 285/668 (42%), Gaps = 65/668 (9%)
Query: 1 MYVIKRDGRKEPVRFDKITARLKKLSYGLSKEHCDPVLVAQKVCAGVYKGVTTTQLDELA 60
+ V KRDG E + DKI L + GL V + + Y G+ T+ + E
Sbjct: 5 LLVTKRDGSTERINLDKIHRVLDWAAEGLHNVSISQVELRSHI--QFYDGIKTSDIHETI 62
Query: 61 AETAAAM-TVNHPDYALLAGRVAVSNLHKITKNSFSETIKDMYNYYNK--RSGKKASLVA 117
+ AA + + + PDY LA R+A+ +L K F +Y++ K GK + +
Sbjct: 63 IKAAADLISRDAPDYQYLAARLAIFHLRKKAYGQFEPPA--LYDHVVKMVEMGKYDNHLL 120
Query: 118 DDVYEIIMKNAACLDGAIIXXXXXXXXXXXXKTLERSYLL--KMDSRVVERPQHMLMRVS 175
+D E K +D I K LE YL+ ++ + E Q + + V+
Sbjct: 121 EDYTEEEFKQ---MDTFIDHDRDMTFSYAAVKQLEGKYLVQNRVTGEIYESAQFLYILVA 177
Query: 176 VGIHKD-DTDSAL----KTYHLMSQHWFTHATPTLFNAGTPQPQLSSCFLL-CMKDDSIE 229
+ + ++ L + Y +S + TP + TP Q SSC L+ C DS++
Sbjct: 178 ACLFSNYPRETRLQYVKRFYDAVSTFKISLPTPIMSGVRTPTRQFSSCVLIEC--GDSLD 235
Query: 230 GIYDTLKKCAIISKSAGGIGLSIHNIRASGSYIHGTNGSSNGIVPMLQVFNDTARYVDQG 289
I T GIG++ IRA GS I G G +P + F + QG
Sbjct: 236 SINATSSAIVKYVSQRAGIGINAGRIRALGSPIRGGEAFHTGCIPFYKHFQTAVKSCSQG 295
Query: 290 GGKRKGAFAIYLEPWHADIFEFLDLRKNQGKEECRARDLFYALWVPDLFMERVRDDGKWS 349
G R GA ++ WH ++ L L+ N+G E R R + Y + + L R+ +
Sbjct: 296 G-VRGGAATLFYPMWHLEVESLLVLKNNRGVEGNRVRHMDYGVQINKLMYTRLLKGEDIT 354
Query: 350 LFCPSDASGLADSWGI---EFEHLYSQYEEEGRA-KMVISARKLWFEILNSQIETGTPYM 405
LF PSD GL D++ EFE LY++YE++ K + A +L+ ++ + TG Y+
Sbjct: 355 LFSPSDVPGLYDAFFADQEEFERLYTKYEKDDSIRKQRVKAVELFSLMMQERASTGRIYI 414
Query: 406 LFKDSCNRKSN-QQNLGTIKSSNLCTEIVEFSSP--------EETAVCNLASIALPRYVR 456
D CN S + ++ SNL EI + P E A+C L++ L
Sbjct: 415 QNVDHCNTHSPFDPAIAPVRQSNLALEIALPTKPLNDVNDENGEIALCTLSAFNL----- 469
Query: 457 EKGVPVQSNVSKLVGSRDSKNRLFDFERLAEVTKIITENLNKIIDVNHYPIETTRRSNLR 516
+ + + L E+ + L+ ++D YPI +R +
Sbjct: 470 --------------------GAINNLDELEELAILAVRALDALLDYQDYPIPAAKRGAMG 509
Query: 517 HRPIGIGIQGLADTFILLGLPFESPEAQQLNKDIFETIYYHALKASAELAVKDGPYETYF 576
R +GIG+ A G + A L FE I Y+ LKAS ELA + G +
Sbjct: 510 RRTLGIGVINFAYYLAKHGKRYSDGSANNLTHKTFEAIQYYLLKASNELAKEQGACPWFN 569
Query: 577 GSPMSKGILQVDMWN------ITPSDRWDWSSLREMISKNGVRNSLLVAPMPTASTSQIL 630
+ +KGIL +D + +DW +LRE I +G+RNS L A MP+ ++SQI
Sbjct: 570 ETTYAKGILPIDTYKKDLDTIANEPLHYDWEALRESIKTHGLRNSTLSALMPSETSSQIS 629
Query: 631 GNNECFEP 638
EP
Sbjct: 630 NATNGIEP 637
>pdb|2XAZ|A Chain A, Ribonucleotide Reductase Y730no2y And C439s Modified R1
Subunit Of E. Coli
pdb|2XAZ|B Chain B, Ribonucleotide Reductase Y730no2y And C439s Modified R1
Subunit Of E. Coli
pdb|2XAZ|C Chain C, Ribonucleotide Reductase Y730no2y And C439s Modified R1
Subunit Of E. Coli
Length = 761
Score = 204 bits (519), Expect = 2e-52, Method: Compositional matrix adjust.
Identities = 181/668 (27%), Positives = 282/668 (42%), Gaps = 65/668 (9%)
Query: 1 MYVIKRDGRKEPVRFDKITARLKKLSYGLSKEHCDPVLVAQKVCAGVYKGVTTTQLDELA 60
+ V KRDG E + DKI L + GL V + + Y G+ T+ + E
Sbjct: 5 LLVTKRDGSTERINLDKIHRVLDWAAEGLHNVSISQVELRSHI--QFYDGIKTSDIHETI 62
Query: 61 AETAAAM-TVNHPDYALLAGRVAVSNLHKITKNSFSETIKDMYNYYNK--RSGKKASLVA 117
+ AA + + + PDY LA R+A+ +L K F +Y++ K GK + +
Sbjct: 63 IKAAADLISRDAPDYQYLAARLAIFHLRKKAYGQFEPPA--LYDHVVKMVEMGKYDNHLL 120
Query: 118 DDVYEIIMKNAACLDGAIIXXXXXXXXXXXXKTLERSYLL--KMDSRVVERPQHMLMRVS 175
+D E K +D I K LE YL+ ++ + E Q + + V+
Sbjct: 121 EDYTEEEFKQ---MDTFIDHDRDMTFSYAAVKQLEGKYLVQNRVTGEIYESAQFLYILVA 177
Query: 176 VGIHKD-----DTDSALKTYHLMSQHWFTHATPTLFNAGTPQPQLSSCFLL-CMKDDSIE 229
+ + + Y +S + TP + TP Q SSC L+ C DS++
Sbjct: 178 ACLFSNYPRETRLQYVKRFYDAVSTFKISLPTPIMSGVRTPTRQFSSCVLIEC--GDSLD 235
Query: 230 GIYDTLKKCAIISKSAGGIGLSIHNIRASGSYIHGTNGSSNGIVPMLQVFNDTARYVDQG 289
I T GIG++ IRA GS I G G +P + F + QG
Sbjct: 236 SINATSSAIVKYVSQRAGIGINAGRIRALGSPIRGGEAFHTGCIPFYKHFQTAVKSCSQG 295
Query: 290 GGKRKGAFAIYLEPWHADIFEFLDLRKNQGKEECRARDLFYALWVPDLFMERVRDDGKWS 349
G R GA ++ WH ++ L L+ N+G E R R + Y + + L R+ +
Sbjct: 296 G-VRGGAATLFYPMWHLEVESLLVLKNNRGVEGNRVRHMDYGVQINKLMYTRLLKGEDIT 354
Query: 350 LFCPSDASGLADSWGI---EFEHLYSQYEEEGRA-KMVISARKLWFEILNSQIETGTPYM 405
LF PSD GL D++ EFE LY++YE++ K + A +L+ ++ + TG Y+
Sbjct: 355 LFSPSDVPGLYDAFFADQEEFERLYTKYEKDDSIRKQRVKAVELFSLMMQERASTGRIYI 414
Query: 406 LFKDSCNRKSN-QQNLGTIKSSNLCTEIVEFSSP--------EETAVCNLASIALPRYVR 456
D CN S + ++ SNL EI + P E A+C L++ L
Sbjct: 415 QNVDHCNTHSPFDPAIAPVRQSNLSLEIALPTKPLNDVNDENGEIALCTLSAFNL----- 469
Query: 457 EKGVPVQSNVSKLVGSRDSKNRLFDFERLAEVTKIITENLNKIIDVNHYPIETTRRSNLR 516
+ + + L E+ + L+ ++D YPI +R +
Sbjct: 470 --------------------GAINNLDELEELAILAVRALDALLDYQDYPIPAAKRGAMG 509
Query: 517 HRPIGIGIQGLADTFILLGLPFESPEAQQLNKDIFETIYYHALKASAELAVKDGPYETYF 576
R +GIG+ A G + A L FE I Y+ LKAS ELA + G +
Sbjct: 510 RRTLGIGVINFAYYLAKHGKRYSDGSANNLTHKTFEAIQYYLLKASNELAKEQGACPWFN 569
Query: 577 GSPMSKGILQVDMWN------ITPSDRWDWSSLREMISKNGVRNSLLVAPMPTASTSQIL 630
+ +KGIL +D + +DW +LRE I +G+RNS L A MP+ ++SQI
Sbjct: 570 ETTYAKGILPIDTYKKDLDTIANEPLHYDWEALRESIKTHGLRNSTLSALMPSETSSQIS 629
Query: 631 GNNECFEP 638
EP
Sbjct: 630 NATNGIEP 637
>pdb|1PEM|A Chain A, Ribonucleotide Reductase Protein R1e From Salmonella
Typhimurium
pdb|1PEO|A Chain A, Ribonucleotide Reductase Protein R1e From Salmonella
Typhimurium
pdb|1PEQ|A Chain A, Ribonucleotide Reductase Protein R1e From Salmonella
Typhimurium
pdb|1PEU|A Chain A, Ribonucleotide Reductase Protein R1e From Salmonella
Typhimurium
pdb|2BQ1|E Chain E, Ribonucleotide Reductase Class 1b Holocomplex R1e,R2f From
Salmonella Typhimurium
pdb|2BQ1|F Chain F, Ribonucleotide Reductase Class 1b Holocomplex R1e,R2f From
Salmonella Typhimurium
Length = 714
Score = 174 bits (442), Expect = 1e-43, Method: Compositional matrix adjust.
Identities = 168/658 (25%), Positives = 273/658 (41%), Gaps = 115/658 (17%)
Query: 154 SYLLKM--DSRVVERPQHMLMRVSVGIHKDDTDSALKTYHLMSQHWFTHATPTLFNAGTP 211
SY LK R +E + + V++ + + D A + M F ATPT N G
Sbjct: 111 SYTLKTFDGKRYLEHFEDRVTMVALTLAQGDETLATQLTDEMLSGRFQPATPTFLNCGKQ 170
Query: 212 Q-PQLSSCFLLCMKDDSIEGIYDTLKKCAIISKSAGGIGLSIHNIRASGSYIHGTNGSSN 270
Q +L SCFLL ++D+ +E I + +SK GG+ + N+R +G+ I S+
Sbjct: 171 QRGELVSCFLLRIEDN-MESIGRAVNSALQLSKRGGGVAFLLSNLREAGAPIKRIENQSS 229
Query: 271 GIVPMLQVFNDTARYVDQGGGKRKGAFAIYLEPWHADIFEFLDLRKNQGKEECRARDLFY 330
G++P++++ D Y +Q G R+GA A+YL H DI FLD ++ E+ R + L
Sbjct: 230 GVIPVMKMLEDAFSYANQLGA-RQGAGAVYLHAHHPDILRFLDTKRENADEKIRIKTLSL 288
Query: 331 ALWVPDLFMERVRDDGKWSLFCPSDASGLADSWGIEFEHLY--SQYEE----EGRAKMVI 384
+ +PD+ +++ + +LF P D + +G F + +Y+E K I
Sbjct: 289 GVVIPDITFRLAKENAQMALFSPYD---IQRRYGKPFGDIAISERYDELIADPHVRKTYI 345
Query: 385 SARKLWFEILNSQIETGTPYMLFKDSCNRKSNQQNLGTIKSSNLCTEIVEFSSPE----- 439
+AR + + Q E+G PY++F+D+ NR + G I SNLC+EI++ +S
Sbjct: 346 NARDFFQTLAEIQFESGYPYIMFEDTVNRANPIA--GRINMSNLCSEILQVNSASRYDDN 403
Query: 440 -------ETAVCNLASIALPRYVREKGVPVQSNVSKLVGSRDSKNRLFDFERLAEVTKII 492
CNL S+ N++ ++ S D + +
Sbjct: 404 LDYTHIGHDISCNLGSL---------------NIAHVMDSPD----------IGRTVETA 438
Query: 493 TENLNKIIDVNHY-PIETTRRSNLRHRPIGIGIQGLADTFILLGLPFESPEAQQLNKDIF 551
L + D++H + + N IG+G L G+ + SPEA F
Sbjct: 439 IRGLTAVSDMSHIRSVPSIAAGNAASHAIGLGQMNLHGYLAREGIAYGSPEALDFTNLYF 498
Query: 552 ETIYYHALKASAELAVKDGPYETYFGSPMSK--------GILQVDMWN------------ 591
TI +HA+ S LA + G +T+ G S+ LQ D W
Sbjct: 499 YTITWHAVHTSMRLARERG--KTFAGFAQSRYASGDYFTQYLQDD-WQPKTAKVRALFAR 555
Query: 592 --ITPSDRWDWSSLREMISKNGVRNSLLVAPMPTASTSQILGNNECFEPYTSNIYTRRVL 649
IT R W LR+ + + G+ N L A PT S S I P + I R+
Sbjct: 556 SGITLPTREMWLKLRDDVMRYGIYNQNLQAVPPTGSISYINHATSSIHPIVAKIEIRK-- 613
Query: 650 SGEFIVVNKHLLKDLTELGLWSHALKTKIIYENGSVSKISEIPEELKAIYKTVWEIKQKT 709
KT +Y + E +Y+ ++I +
Sbjct: 614 -----------------------EGKTGRVYYPAPF-----MTNENLDMYQDAYDIGPEK 645
Query: 710 LVDMAADRGCYIDQSQSLNIHMEQPDHGK---LTSLHFYAWSKGMKTGMYYLRTRAAA 764
++D A+ ++DQ SL + PD + YAW KG+K+ +YY+R R A
Sbjct: 646 IIDTYAEATRHVDQGLSLTLFF--PDTATTRDINKAQIYAWRKGIKS-LYYIRLRQLA 700
>pdb|1XJK|A Chain A, Structural Mechanism Of Allosteric Substrate Specificity
In A Ribonucleotide Reductase: Dgtp-Adp Complex
pdb|1XJK|B Chain B, Structural Mechanism Of Allosteric Substrate Specificity
In A Ribonucleotide Reductase: Dgtp-Adp Complex
Length = 644
Score = 157 bits (397), Expect = 2e-38, Method: Compositional matrix adjust.
Identities = 156/590 (26%), Positives = 245/590 (41%), Gaps = 111/590 (18%)
Query: 190 YHLMSQHWFTHATPTLFNAG---------TPQPQ------------------LSSCFLLC 222
+ ++ F +PTLFNAG P Q LS+CF++
Sbjct: 79 FRVLKARLFIPNSPTLFNAGLGVKHDLLWKPIDQMTLEDYEEIYRSRNHLHMLSACFVVP 138
Query: 223 MKDDSIEGIYDTLKKCAIISKSAGGIGLSIHNIRASGSYIHGTNGSSNGIVPMLQVFNDT 282
+ DSIE I++ +K+ A+I+K GG+G + +R GS++ GT+G ++G V + VFN
Sbjct: 139 V-GDSIEEIFEAVKEYALITKVGGGVGSNFSELRPKGSFVAGTHGKASGPVSFMHVFNSA 197
Query: 283 ARYVDQGGGKRKGAFAIYLEPWHADIFEFLDLRKNQGKEECRARDLFYALWVPDLFMERV 342
V Q G +R+GA L H DI EF+D +K E F+ L
Sbjct: 198 ISVVKQ-GSRRRGALMGILNINHPDIEEFIDAKKENTGEAVLN---FFNL---------- 243
Query: 343 RDDGKWSLFCPSDASGLADSWGIEFEHLYSQYEEEGRAKMVISARKLWFEILNSQIETGT 402
S+ P D + + + E S R K+ I R+L+ +I + ++G
Sbjct: 244 ------SVGFPMDKKEILKLYEEDGELELSHPRSTIRKKVKI--RELFRKIATNAWKSGD 295
Query: 403 PYMLFKDSCNRKSNQQNLGTIKSSNLCTEIVEFSSPEETAVCNLASIALPRYVREKGVPV 462
P + F N+ I S+N C EI + CNL SI + ++
Sbjct: 296 PGLAFLGEMNKYYPLYPHRKINSTNPCGEI----GLSDYEACNLGSIDVAKFY------- 344
Query: 463 QSNVSKLVGSRDSKNRLFDFERLAEVTKIITENLNKIIDVNHYPIETTRRSNLRHRPIGI 522
N D E L E+ +I L+ +IDVN +PI+ ++ R +G+
Sbjct: 345 -------------NNGFVDLEALQELVQIAVRFLDNVIDVNVFPIDKITKAVKESRRLGL 391
Query: 523 GIQGLADTFILLGLPFESPEAQQLNKDIFETIYYHALKASAELAVKDGPY---------- 572
GI G AD L +P+ S EA+ ++ I HA + S EL + G +
Sbjct: 392 GIMGFADLLYKLEIPYNSQEARDFAANLMAFIALHAHRTSYELGKEKGNFPLLEISRYRT 451
Query: 573 ETYFGSPMSKGILQVDMWNITPSDRWDWSSLREM--ISKNGVRNSLLVAPMPTASTSQIL 630
E F P + G+ D +RE+ ++K RN L+ PT S S I
Sbjct: 452 EDNF-VPFAMGMSNYD------------DEIREVMKMTKEFRRNVALLTIAPTGSISNIA 498
Query: 631 GNNECFEPYTSNIYTRRVLSGE-----FIVVNKHLLKDLTELGLWSHALK--TKIIYENG 683
+ EP YTR V + + VN+ L + L LK K + E G
Sbjct: 499 DTSSGLEPNFLLAYTRFVTKDDGTKEPLLYVNQVLREKLN-----PEILKRIEKELIEKG 553
Query: 684 SVSKISEIPEELKAIYKTVWEIKQKTLVDMAADRGCYIDQSQSLNIHMEQ 733
S+ I ++PE++K ++ +I + M Y+D + S I+M Q
Sbjct: 554 SLKDIPDVPEKIKKVFVVALDIDPMDHLLMQDAFQRYVDNNISKTINMPQ 603
>pdb|1XJE|A Chain A, Structural Mechanism Of Allosteric Substrate Specificity
In A Ribonucleotide Reductase: Dttp-Gdp Complex
pdb|1XJE|B Chain B, Structural Mechanism Of Allosteric Substrate Specificity
In A Ribonucleotide Reductase: Dttp-Gdp Complex
pdb|1XJN|A Chain A, Structural Mechanism Of Allosteric Substrate Specificity
In A Ribonucleotide Reductase: Datp-Cdp Complex
pdb|1XJN|B Chain B, Structural Mechanism Of Allosteric Substrate Specificity
In A Ribonucleotide Reductase: Datp-Cdp Complex
pdb|1XJN|C Chain C, Structural Mechanism Of Allosteric Substrate Specificity
In A Ribonucleotide Reductase: Datp-Cdp Complex
pdb|1XJN|D Chain D, Structural Mechanism Of Allosteric Substrate Specificity
In A Ribonucleotide Reductase: Datp-Cdp Complex
pdb|1XJF|A Chain A, Structural Mechanism Of Allosteric Substrate Specificity
In A Ribonucleotide Reductase: Datp Complex
pdb|1XJF|B Chain B, Structural Mechanism Of Allosteric Substrate Specificity
In A Ribonucleotide Reductase: Datp Complex
pdb|1XJG|A Chain A, Structural Mechanism Of Allosteric Substrate Specificity
In A Ribonucleotide Reductase: Datp-Udp Complex
pdb|1XJG|B Chain B, Structural Mechanism Of Allosteric Substrate Specificity
In A Ribonucleotide Reductase: Datp-Udp Complex
pdb|1XJJ|A Chain A, Structural Mechanism Of Allosteric Substrate Specificity
In A Ribonucleotide Reductase: Dgtp Complex
pdb|1XJJ|B Chain B, Structural Mechanism Of Allosteric Substrate Specificity
In A Ribonucleotide Reductase: Dgtp Complex
pdb|1XJM|A Chain A, Structural Mechanism Of Allosteric Substrate Specificity
In A Ribonucleotide Reductase: Dttp Complex
pdb|1XJM|B Chain B, Structural Mechanism Of Allosteric Substrate Specificity
In A Ribonucleotide Reductase: Dttp Complex
pdb|3O0N|A Chain A, Thermotoga Maritima Ribonucleotide Reductase, Nrdj, In
Complex With Dttp And Adenosylcobalamin
pdb|3O0N|B Chain B, Thermotoga Maritima Ribonucleotide Reductase, Nrdj, In
Complex With Dttp And Adenosylcobalamin
pdb|3O0O|A Chain A, Thermotoga Maritima Ribonucleotide Reductase, Nrdj, In
Complex With Dttp, Gdp And Adenosylcobalamin
pdb|3O0O|B Chain B, Thermotoga Maritima Ribonucleotide Reductase, Nrdj, In
Complex With Dttp, Gdp And Adenosylcobalamin
pdb|3O0Q|A Chain A, Thermotoga Maritima Ribonucleotide Reductase, Nrdj, In
Complex With Dttp, Gdp And Adenosine
pdb|3O0Q|B Chain B, Thermotoga Maritima Ribonucleotide Reductase, Nrdj, In
Complex With Dttp, Gdp And Adenosine
Length = 644
Score = 157 bits (396), Expect = 3e-38, Method: Compositional matrix adjust.
Identities = 156/590 (26%), Positives = 245/590 (41%), Gaps = 111/590 (18%)
Query: 190 YHLMSQHWFTHATPTLFNAG---------TPQPQ------------------LSSCFLLC 222
+ ++ F +PTLFNAG P Q LS+CF++
Sbjct: 79 FRVLKARLFIPNSPTLFNAGLGVKHDLLWKPIDQMTLEDYEEIYRSRNHLHMLSACFVVP 138
Query: 223 MKDDSIEGIYDTLKKCAIISKSAGGIGLSIHNIRASGSYIHGTNGSSNGIVPMLQVFNDT 282
+ DSIE I++ +K+ A+I+K GG+G + +R GS++ GT+G ++G V + VFN
Sbjct: 139 V-GDSIEEIFEAVKEYALITKVGGGVGSNFSELRPKGSFVAGTHGKASGPVSFMHVFNSA 197
Query: 283 ARYVDQGGGKRKGAFAIYLEPWHADIFEFLDLRKNQGKEECRARDLFYALWVPDLFMERV 342
V Q G +R+GA L H DI EF+D +K E F+ L
Sbjct: 198 ISVVKQ-GSRRRGALMGILNINHPDIEEFIDAKKENTGEAVLN---FFNL---------- 243
Query: 343 RDDGKWSLFCPSDASGLADSWGIEFEHLYSQYEEEGRAKMVISARKLWFEILNSQIETGT 402
S+ P D + + + E S R K+ I R+L+ +I + ++G
Sbjct: 244 ------SVGFPMDKKEILKLYEEDGELELSHPRSTIRKKVKI--RELFRKIATNAWKSGD 295
Query: 403 PYMLFKDSCNRKSNQQNLGTIKSSNLCTEIVEFSSPEETAVCNLASIALPRYVREKGVPV 462
P + F N+ I S+N C EI + CNL SI + ++
Sbjct: 296 PGLAFLGEMNKYYPLYPHRKINSTNPCGEI----GLSDYEACNLGSIDVAKFY------- 344
Query: 463 QSNVSKLVGSRDSKNRLFDFERLAEVTKIITENLNKIIDVNHYPIETTRRSNLRHRPIGI 522
N D E L E+ +I L+ +IDVN +PI+ ++ R +G+
Sbjct: 345 -------------NNGFVDLEALQELVQIAVRFLDNVIDVNVFPIDKITKAVKESRRLGL 391
Query: 523 GIQGLADTFILLGLPFESPEAQQLNKDIFETIYYHALKASAELAVKDGPY---------- 572
GI G AD L +P+ S EA+ ++ I HA + S EL + G +
Sbjct: 392 GIMGFADLLYKLEIPYNSQEARDFAANLMAFIALHAHRTSYELGKEKGNFPLLEISRYRT 451
Query: 573 ETYFGSPMSKGILQVDMWNITPSDRWDWSSLREM--ISKNGVRNSLLVAPMPTASTSQIL 630
E F P + G+ D +RE+ ++K RN L+ PT S S I
Sbjct: 452 EDNF-VPFAMGMSNYD------------DEIREVMKMTKEFRRNVALLTIAPTGSISNIA 498
Query: 631 GNNECFEPYTSNIYTRRVLSGE-----FIVVNKHLLKDLTELGLWSHALK--TKIIYENG 683
+ EP YTR V + + VN+ L + L LK K + E G
Sbjct: 499 DTSSGLEPNFLLAYTRFVTKEDGTKEPLLYVNQVLREKLN-----PEILKRIEKELIEKG 553
Query: 684 SVSKISEIPEELKAIYKTVWEIKQKTLVDMAADRGCYIDQSQSLNIHMEQ 733
S+ I ++PE++K ++ +I + M Y+D + S I+M Q
Sbjct: 554 SLKDIPDVPEKIKKVFVVALDIDPMDHLLMQDAFQRYVDNNISKTINMPQ 603
>pdb|2BRY|A Chain A, Crystal Structure Of The Native Monooxygenase Domain Of
Mical At 1.45 A Resolution
pdb|2BRY|B Chain B, Crystal Structure Of The Native Monooxygenase Domain Of
Mical At 1.45 A Resolution
pdb|2C4C|A Chain A, Crystal Structure Of The Nadph-Treated Monooxygenase
Domain Of Mical
pdb|2C4C|B Chain B, Crystal Structure Of The Nadph-Treated Monooxygenase
Domain Of Mical
Length = 497
Score = 33.1 bits (74), Expect = 0.57, Method: Compositional matrix adjust.
Identities = 31/93 (33%), Positives = 45/93 (48%), Gaps = 9/93 (9%)
Query: 453 RYVREKGVPVQSNVSKLVGSRDSKNRLFDFERLAEVTKIITENLNKIIDVNHYPIETTRR 512
R V E VP S V+++ N+ F F+ L + T I EN+ D HY + T ++
Sbjct: 256 RTVEETQVPEISGVARIY------NQKF-FQSLLKATGIDLENIVYYKDETHYFVMTAKK 308
Query: 513 SNLRHRPIGIGIQGLADTFILLGLPFESPEAQQ 545
L +G+ Q L++T LLG PEA Q
Sbjct: 309 QCLLR--LGVLRQDLSETDQLLGKANVVPEALQ 339
>pdb|2BRA|A Chain A, Structure Of N-Terminal Fad Binding Motif Of Mouse Mical
pdb|2BRA|B Chain B, Structure Of N-Terminal Fad Binding Motif Of Mouse Mical
Length = 484
Score = 33.1 bits (74), Expect = 0.61, Method: Compositional matrix adjust.
Identities = 31/93 (33%), Positives = 45/93 (48%), Gaps = 9/93 (9%)
Query: 453 RYVREKGVPVQSNVSKLVGSRDSKNRLFDFERLAEVTKIITENLNKIIDVNHYPIETTRR 512
R V E VP S V+++ N+ F F+ L + T I EN+ D HY + T ++
Sbjct: 248 RTVEETQVPEISGVARIY------NQKF-FQSLLKATGIDLENIVYYKDETHYFVMTAKK 300
Query: 513 SNLRHRPIGIGIQGLADTFILLGLPFESPEAQQ 545
L +G+ Q L++T LLG PEA Q
Sbjct: 301 QCLLR--LGVLRQDLSETDQLLGKANVVPEALQ 331
>pdb|1L1L|A Chain A, Crystal Structure Of B-12 Dependent (Class Ii)
Ribonucleotide Reductase
pdb|1L1L|B Chain B, Crystal Structure Of B-12 Dependent (Class Ii)
Ribonucleotide Reductase
pdb|1L1L|C Chain C, Crystal Structure Of B-12 Dependent (Class Ii)
Ribonucleotide Reductase
pdb|1L1L|D Chain D, Crystal Structure Of B-12 Dependent (Class Ii)
Ribonucleotide Reductase
Length = 739
Score = 32.3 bits (72), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 13/44 (29%), Positives = 25/44 (56%)
Query: 250 LSIHNIRASGSYIHGTNGSSNGIVPMLQVFNDTARYVDQGGGKR 293
L + +IR G+ IHG G+++G +P++ + D ++ G R
Sbjct: 252 LDLSDIRPYGAEIHGFGGTASGPMPLISMLLDVNEVLNNKAGGR 295
>pdb|3S9J|A Chain A, Crystal Structure Of A Member Of Duf4221 Family (Bvu_1028)
From Bacteroides Vulgatus Atcc 8482 At 1.75 A Resolution
Length = 369
Score = 29.6 bits (65), Expect = 6.9, Method: Compositional matrix adjust.
Identities = 15/51 (29%), Positives = 23/51 (45%)
Query: 539 ESPEAQQLNKDIFETIYYHALKASAELAVKDGPYETYFGSPMSKGILQVDM 589
E+P + D + +YY + +LA + PYET G S +L D
Sbjct: 263 ENPRYWHIXYDKYRNVYYRFAEXPYKLAPNESPYETPKGKEFSVIVLNADF 313
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.318 0.133 0.395
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 23,517,261
Number of Sequences: 62578
Number of extensions: 985121
Number of successful extensions: 2740
Number of sequences better than 100.0: 47
Number of HSP's better than 100.0 without gapping: 31
Number of HSP's successfully gapped in prelim test: 16
Number of HSP's that attempted gapping in prelim test: 2582
Number of HSP's gapped (non-prelim): 55
length of query: 810
length of database: 14,973,337
effective HSP length: 107
effective length of query: 703
effective length of database: 8,277,491
effective search space: 5819076173
effective search space used: 5819076173
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 56 (26.2 bits)