BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 003575
(810 letters)
Database: swissprot
539,616 sequences; 191,569,459 total letters
Searching..................................................done
>sp|Q9SJ20|RIR1_ARATH Ribonucleoside-diphosphate reductase large subunit OS=Arabidopsis
thaliana GN=RNR1 PE=1 SV=1
Length = 816
Score = 1391 bits (3601), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 644/817 (78%), Positives = 736/817 (90%), Gaps = 8/817 (0%)
Query: 1 MYVIKRDGRKEPVRFDKITARLKKLSYGLSKEHCDPVLVAQKVCAGVYKGVTTTQLDELA 60
MYV+KRDGR+E V FDKITARLKKLSYGLS +HCDPVLVAQKVCAGVYKGVTT+QLDELA
Sbjct: 1 MYVVKRDGRQETVHFDKITARLKKLSYGLSSDHCDPVLVAQKVCAGVYKGVTTSQLDELA 60
Query: 61 AETAAAMTVNHPDYALLAGRVAVSNLHKITKNSFSETIKDMYNYYNKRSGKKASLVADDV 120
AETAAAMT NHPDYA LA R+AVSNLHK TK SFSETIKDM+ + N RSG K+ L+ADDV
Sbjct: 61 AETAAAMTCNHPDYASLAARIAVSNLHKNTKKSFSETIKDMFYHVNDRSGLKSPLIADDV 120
Query: 121 YEIIMKNAACLDGAIIYDRDFDFDYFGFKTLERSYLLKMDSRVVERPQHMLMRVSVGIHK 180
+EIIM+NAA LD IIYDRDF++DYFGFKTLERSYLLK+ VVERPQHMLMRV+VGIHK
Sbjct: 121 FEIIMQNAARLDSEIIYDRDFEYDYFGFKTLERSYLLKVQGTVVERPQHMLMRVAVGIHK 180
Query: 181 DDTDSALKTYHLMSQHWFTHATPTLFNAGTPQPQLSSCFLLCMKDDSIEGIYDTLKKCAI 240
DD DS ++TYHLMSQ WFTHA+PTLFNAGTP+PQLSSCFL+CMKDDSIEGIY+TLK+CA+
Sbjct: 181 DDIDSVIQTYHLMSQRWFTHASPTLFNAGTPRPQLSSCFLVCMKDDSIEGIYETLKECAV 240
Query: 241 ISKSAGGIGLSIHNIRASGSYIHGTNGSSNGIVPMLQVFNDTARYVDQGGGKRKGAFAIY 300
ISKSAGGIG+S+HNIRA+GSYI GTNG+SNGIVPML+VFNDTARYVDQGGGKRKGAFA+Y
Sbjct: 241 ISKSAGGIGVSVHNIRATGSYIRGTNGTSNGIVPMLRVFNDTARYVDQGGGKRKGAFAVY 300
Query: 301 LEPWHADIFEFLDLRKNQGKEECRARDLFYALWVPDLFMERVRDDGKWSLFCPSDASGLA 360
LEPWHAD++EFL+LRKN GKEE RARDLFYALW+PDLFMERV+++G+WSLFCP++A GLA
Sbjct: 301 LEPWHADVYEFLELRKNHGKEEHRARDLFYALWLPDLFMERVQNNGQWSLFCPNEAPGLA 360
Query: 361 DSWGIEFEHLYSQYEEEGRAKMVISARKLWFEILNSQIETGTPYMLFKDSCNRKSNQQNL 420
D WG EFE LY++YE EG+AK V+ A++LW+EIL SQ+ETGTPYMLFKDSCNRKSNQQNL
Sbjct: 361 DCWGAEFETLYTKYEREGKAKKVVQAQQLWYEILTSQVETGTPYMLFKDSCNRKSNQQNL 420
Query: 421 GTIKSSNLCTEIVEFSSPEETAVCNLASIALPRYVREKGVPVQSNVSKLVGSRDSKNRLF 480
GTIKSSNLCTEI+E++SP ETAVCNLASIALPR+VREKGVP+ S+ KL GS DSKNR F
Sbjct: 421 GTIKSSNLCTEIIEYTSPTETAVCNLASIALPRFVREKGVPLDSHPPKLAGSLDSKNRYF 480
Query: 481 DFERLAEVTKIITENLNKIIDVNHYPIETTRRSNLRHRPIGIGIQGLADTFILLGLPFES 540
DFE+LAEVT +T NLNKIIDVN+YP+ET + SN+RHRPIGIG+QGLAD FILLG+PF+S
Sbjct: 481 DFEKLAEVTATVTVNLNKIIDVNYYPVETAKTSNMRHRPIGIGVQGLADAFILLGMPFDS 540
Query: 541 PEAQQLNKDIFETIYYHALKASAELAVKDGPYETYFGSPMSKGILQVDMWNITPSDRWDW 600
PEAQQLNKDIFETIYYHALKAS ELA + GPYETY GSP+SKGILQ DMWN+ PSDRWDW
Sbjct: 541 PEAQQLNKDIFETIYYHALKASTELAARLGPYETYAGSPVSKGILQPDMWNVIPSDRWDW 600
Query: 601 SSLREMISKNGVRNSLLVAPMPTASTSQILGNNECFEPYTSNIYTRRVLSGEFIVVNKHL 660
+ LR+MISKNGVRNSLLVAPMPTASTSQILGNNECFEPYTSNIY+RRVLSGEF+VVNKHL
Sbjct: 601 AVLRDMISKNGVRNSLLVAPMPTASTSQILGNNECFEPYTSNIYSRRVLSGEFVVVNKHL 660
Query: 661 LKDLTELGLWSHALKTKIIYENGSVSKISEIPEELKAIYKTVWEIKQKTLVDMAADRGCY 720
L DLT++GLW+ LK K+I ENGS+ ++EIP++LKAIY+TVWEIKQ+T+VDMAADRGCY
Sbjct: 661 LHDLTDMGLWTPTLKNKLINENGSIVNVAEIPDDLKAIYRTVWEIKQRTVVDMAADRGCY 720
Query: 721 IDQSQSLNIHMEQPDHGKLTSLHFYAWSKGMKTGMYYLRTRAAADAIKFTVDTSVLNNEK 780
IDQSQSLNIHM++P+ KLTSLHFY W KG+KTGMYYLR+RAAADAIKFTVDT++L EK
Sbjct: 721 IDQSQSLNIHMDKPNFAKLTSLHFYTWKKGLKTGMYYLRSRAAADAIKFTVDTAML-KEK 779
Query: 781 ANRADNDVEA-------NLAQVVCSLKNQEECMACGS 810
+ A+ D E LAQ+VCSL N EEC+ACGS
Sbjct: 780 PSVAEGDKEVEEEDNETKLAQMVCSLTNPEECLACGS 816
>sp|P07742|RIR1_MOUSE Ribonucleoside-diphosphate reductase large subunit OS=Mus musculus
GN=Rrm1 PE=1 SV=2
Length = 792
Score = 1112 bits (2875), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 529/811 (65%), Positives = 650/811 (80%), Gaps = 20/811 (2%)
Query: 1 MYVIKRDGRKEPVRFDKITARLKKLSYGLSKEHCDPVLVAQKVCAGVYKGVTTTQLDELA 60
M+VIKRDGR+E V FDKIT+R++KL YGL+ + DP + KV G+Y GVTT +LD LA
Sbjct: 1 MHVIKRDGRQERVMFDKITSRIQKLCYGLNMDFVDPAQITMKVIQGLYSGVTTVELDTLA 60
Query: 61 AETAAAMTVNHPDYALLAGRVAVSNLHKITKNSFSETIKDMYNYYNKRSGKKASLVADDV 120
AETAA +T HPDYA+LA R+AVSNLHK TK FS+ ++D+YNY N +G+ + +VA
Sbjct: 61 AETAATLTTKHPDYAILAARIAVSNLHKETKKVFSDVMEDLYNYINPHNGRHSPMVASST 120
Query: 121 YEIIMKNAACLDGAIIYDRDFDFDYFGFKTLERSYLLKMDSRVVERPQHMLMRVSVGIHK 180
+I+M N L+ AIIYDRDF ++YFGFKTLERSYLLK++ +V ERPQHMLMRVSVGIHK
Sbjct: 121 LDIVMANKDRLNSAIIYDRDFSYNYFGFKTLERSYLLKINGKVAERPQHMLMRVSVGIHK 180
Query: 181 DDTDSALKTYHLMSQHWFTHATPTLFNAGTPQPQLSSCFLLCMKDDSIEGIYDTLKKCAI 240
+D D+A++TY+L+S+ WFTHA+PTLFNAGT +PQLSSCFLL MKDDSIEGIYDTLK+CA+
Sbjct: 181 EDIDAAIETYNLLSEKWFTHASPTLFNAGTNRPQLSSCFLLSMKDDSIEGIYDTLKQCAL 240
Query: 241 ISKSAGGIGLSIHNIRASGSYIHGTNGSSNGIVPMLQVFNDTARYVDQGGGKRKGAFAIY 300
ISKSAGGIG+++ IRA+GSYI GTNG+SNG+VPML+V+N+TARYVDQGG KR GAFAIY
Sbjct: 241 ISKSAGGIGVAVSCIRATGSYIAGTNGNSNGLVPMLRVYNNTARYVDQGGNKRPGAFAIY 300
Query: 301 LEPWHADIFEFLDLRKNQGKEECRARDLFYALWVPDLFMERVRDDGKWSLFCPSDASGLA 360
LEPWH DIFEFLDL+KN GKEE RARDLF+ALW+PDLFM+RV + WSL CP++ GL
Sbjct: 301 LEPWHLDIFEFLDLKKNTGKEEQRARDLFFALWIPDLFMKRVETNQDWSLMCPNECPGLD 360
Query: 361 DSWGIEFEHLYSQYEEEGRAKMVISARKLWFEILNSQIETGTPYMLFKDSCNRKSNQQNL 420
+ WG EFE LY YE++GR + V+ A++LW+ I+ SQ ETGTPYML+KDSCNRKSNQQNL
Sbjct: 361 EVWGEEFEKLYESYEKQGRVRKVVKAQQLWYAIIESQTETGTPYMLYKDSCNRKSNQQNL 420
Query: 421 GTIKSSNLCTEIVEFSSPEETAVCNLASIALPRYVREKGVPVQSNVSKLVGSRDSKNRLF 480
GTIK SNLCTEIVE++S +E AVCNLAS+AL YV + +
Sbjct: 421 GTIKCSNLCTEIVEYTSKDEVAVCNLASLALNMYV-------------------TPEHTY 461
Query: 481 DFERLAEVTKIITENLNKIIDVNHYPIETTRRSNLRHRPIGIGIQGLADTFILLGLPFES 540
DFE+LAEVTK+I NLNKIID+N+YPI SN RHRPIGIG+QGLAD FIL+ PFES
Sbjct: 462 DFEKLAEVTKVIVRNLNKIIDINYYPIPEAHLSNKRHRPIGIGVQGLADAFILMRYPFES 521
Query: 541 PEAQQLNKDIFETIYYHALKASAELAVKDGPYETYFGSPMSKGILQVDMWNITPSDRWDW 600
PEAQ LNK IFETIYY AL+AS ELA + GPYETY GSP+SKGILQ DMWN+ P+D WDW
Sbjct: 522 PEAQLLNKQIFETIYYGALEASCELAKEYGPYETYEGSPVSKGILQYDMWNVAPTDLWDW 581
Query: 601 SSLREMISKNGVRNSLLVAPMPTASTSQILGNNECFEPYTSNIYTRRVLSGEFIVVNKHL 660
L+E I+K G+RNSLL+APMPTAST+QILGNNE EPYTSNIYTRRVLSGEF +VN HL
Sbjct: 582 KPLKEKIAKYGIRNSLLIAPMPTASTAQILGNNESIEPYTSNIYTRRVLSGEFQIVNPHL 641
Query: 661 LKDLTELGLWSHALKTKIIYENGSVSKISEIPEELKAIYKTVWEIKQKTLVDMAADRGCY 720
LKDLTE GLW+ +K +II NGS+ I EIP++LK +YKTVWEI QKT++ MAA+RG +
Sbjct: 642 LKDLTERGLWNEEMKNQIIACNGSIQSIPEIPDDLKQLYKTVWEISQKTVLKMAAERGAF 701
Query: 721 IDQSQSLNIHMEQPDHGKLTSLHFYAWSKGMKTGMYYLRTRAAADAIKFTVDTSVLNNEK 780
IDQSQSLNIH+ +P++GKLTS+HFY W +G+KTGMYYLRTR AA+ I+FT++ L +++
Sbjct: 702 IDQSQSLNIHIAEPNYGKLTSMHFYGWKQGLKTGMYYLRTRPAANPIQFTLNKEKLKDKE 761
Query: 781 ANRADNDVEA-NLAQVVCSLKNQEECMACGS 810
+ + + N A +VCSL+N+EEC+ CGS
Sbjct: 762 KALKEEEEKERNTAAMVCSLENREECLMCGS 792
>sp|Q9UW15|RIR1_NEUCR Ribonucleoside-diphosphate reductase large chain OS=Neurospora
crassa (strain ATCC 24698 / 74-OR23-1A / CBS 708.71 /
DSM 1257 / FGSC 987) GN=rnr-1 PE=1 SV=2
Length = 929
Score = 1107 bits (2864), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 508/776 (65%), Positives = 623/776 (80%), Gaps = 18/776 (2%)
Query: 1 MYVIKRDGRKEPVRFDKITARLKKLSYGLSKEHCDPVLVAQKVCAGVYKGVTTTQLDELA 60
MYV KRDGR+E V+FDKITAR+ +L YGL H DPV + QKV +GVY GVTT QLD+LA
Sbjct: 1 MYVKKRDGRQERVQFDKITARVSRLCYGLDMNHVDPVAITQKVISGVYGGVTTAQLDDLA 60
Query: 61 AETAAAMTVNHPDYALLAGRVAVSNLHKITKNSFSETIKDMYNYYNKRSGKKASLVADDV 120
AETAA MTV HPDYA+LA R+AVSNLHK TK +S I ++YNY N R+GK + ++A DV
Sbjct: 61 AETAAYMTVTHPDYAILAARIAVSNLHKQTKKQWSLVISELYNYVNPRTGKHSPMIAKDV 120
Query: 121 YEIIMKNAACLDGAIIYDRDFDFDYFGFKTLERSYLLKMDSRVVERPQHMLMRVSVGIHK 180
YE +M++ D AI+YDRDF++ YFGFKTLERSYLLK+D ++ ERPQHM+MRV+VGI
Sbjct: 121 YECVMRHKDEFDSAIVYDRDFNYQYFGFKTLERSYLLKLDGQIAERPQHMIMRVAVGIWG 180
Query: 181 DDTDSALKTYHLMSQHWFTHATPTLFNAGTPQPQLSSCFLLCMKDDSIEGIYDTLKKCAI 240
DD + ++TY+LMS FTHA+PTLFNAGTPQPQLSSCFL+ MK+DSIEGIYDTLK CA+
Sbjct: 181 DDVERVIETYNLMSLKTFTHASPTLFNAGTPQPQLSSCFLVDMKEDSIEGIYDTLKTCAM 240
Query: 241 ISKSAGGIGLSIHNIRASGSYIHGTNGSSNGIVPMLQVFNDTARYVDQGGGKRKGAFAIY 300
ISK AGGIGL+IH IRA+GSYI GTNG+SNGIVPML+VFN+TARYVDQGG KR GAFAIY
Sbjct: 241 ISKMAGGIGLNIHRIRATGSYIAGTNGTSNGIVPMLRVFNNTARYVDQGGNKRPGAFAIY 300
Query: 301 LEPWHADIFEFLDLRKNQGKEECRARDLFYALWVPDLFMERVRDDGKWSLFCPSDASGLA 360
LEPWHAD+FEFLDLRKN GKEE RARDLF ALW+PDLFM+RV +G+W+L CP + GLA
Sbjct: 301 LEPWHADVFEFLDLRKNHGKEEVRARDLFLALWIPDLFMKRVEQNGQWTLMCPHECPGLA 360
Query: 361 DSWGIEFEHLYSQYEEEGRAKMVISARKLWFEILNSQIETGTPYMLFKDSCNRKSNQQNL 420
D +G EFE LY +YE+EG+ + + A+KLW+ IL +Q ETG P+ML+KD+CNRKSNQ+NL
Sbjct: 361 DVYGDEFEALYEKYEKEGKGRKTVKAQKLWYAILEAQTETGNPFMLYKDACNRKSNQKNL 420
Query: 421 GTIKSSNLCTEIVEFSSPEETAVCNLASIALPRYVREKGVPVQSNVSKLVGSRDSKNRLF 480
GTI+SSNLCTEI+E+S+P+E AVCNLAS+AL ++ D +N +
Sbjct: 421 GTIRSSNLCTEIIEYSAPDEVAVCNLASLALSAFI------------------DYENASY 462
Query: 481 DFERLAEVTKIITENLNKIIDVNHYPIETTRRSNLRHRPIGIGIQGLADTFILLGLPFES 540
DF++L EVT+++ NLNKIID+NHYP++ SN+RHRPIG+G+QGLAD F+ L +PF+S
Sbjct: 463 DFKKLHEVTQVVVRNLNKIIDINHYPVKEAHNSNMRHRPIGVGVQGLADAFLALRMPFDS 522
Query: 541 PEAQQLNKDIFETIYYHALKASAELAVKDGPYETYFGSPMSKGILQVDMWNITPSDRWDW 600
A +LN IFETIY+ AL AS +LA + GPY TY GSP+S+GILQ DMWN+TP++ WDW
Sbjct: 523 DAASKLNIQIFETIYHAALTASCQLAKEQGPYATYEGSPVSQGILQYDMWNVTPTNLWDW 582
Query: 601 SSLREMISKNGVRNSLLVAPMPTASTSQILGNNECFEPYTSNIYTRRVLSGEFIVVNKHL 660
++L+ I K GVRNSLL+APMPTASTSQILGNNECFEPYTSNIY RRVL+GEF VVN L
Sbjct: 583 TALKADIKKYGVRNSLLLAPMPTASTSQILGNNECFEPYTSNIYQRRVLAGEFQVVNPWL 642
Query: 661 LKDLTELGLWSHALKTKIIYENGSVSKISEIPEELKAIYKTVWEIKQKTLVDMAADRGCY 720
L+DL E+GLWS A+K +II E GS+ I IP ++KA+YKTVWEI Q+T+V MAADRG +
Sbjct: 643 LRDLVEMGLWSDAMKNRIIAEGGSIQNIQSIPNDIKALYKTVWEISQRTIVKMAADRGAF 702
Query: 721 IDQSQSLNIHMEQPDHGKLTSLHFYAWSKGMKTGMYYLRTRAAADAIKFTVDTSVL 776
IDQSQSLNIHM +P GK+TS+HF W G+KTGMYYLRT+AAA I+FTVD L
Sbjct: 703 IDQSQSLNIHMREPTMGKITSMHFAGWKMGLKTGMYYLRTQAAAQPIQFTVDQEAL 758
>sp|P23921|RIR1_HUMAN Ribonucleoside-diphosphate reductase large subunit OS=Homo sapiens
GN=RRM1 PE=1 SV=1
Length = 792
Score = 1105 bits (2857), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 524/811 (64%), Positives = 650/811 (80%), Gaps = 20/811 (2%)
Query: 1 MYVIKRDGRKEPVRFDKITARLKKLSYGLSKEHCDPVLVAQKVCAGVYKGVTTTQLDELA 60
M+VIKRDGR+E V FDKIT+R++KL YGL+ + DP + KV G+Y GVTT +LD LA
Sbjct: 1 MHVIKRDGRQERVMFDKITSRIQKLCYGLNMDFVDPAQITMKVIQGLYSGVTTVELDTLA 60
Query: 61 AETAAAMTVNHPDYALLAGRVAVSNLHKITKNSFSETIKDMYNYYNKRSGKKASLVADDV 120
AETAA +T HPDYA+LA R+AVSNLHK TK FS+ ++D+YNY N +GK + +VA
Sbjct: 61 AETAATLTTKHPDYAILAARIAVSNLHKETKKVFSDVMEDLYNYINPHNGKHSPMVAKST 120
Query: 121 YEIIMKNAACLDGAIIYDRDFDFDYFGFKTLERSYLLKMDSRVVERPQHMLMRVSVGIHK 180
+I++ N L+ AIIYDRDF ++YFGFKTLERSYLLK++ +V ERPQHMLMRVSVGIHK
Sbjct: 121 LDIVLANKDRLNSAIIYDRDFSYNYFGFKTLERSYLLKINGKVAERPQHMLMRVSVGIHK 180
Query: 181 DDTDSALKTYHLMSQHWFTHATPTLFNAGTPQPQLSSCFLLCMKDDSIEGIYDTLKKCAI 240
+D D+A++TY+L+S+ WFTHA+PTLFNAGT +PQLSSCFLL MKDDSIEGIYDTLK+CA+
Sbjct: 181 EDIDAAIETYNLLSERWFTHASPTLFNAGTNRPQLSSCFLLSMKDDSIEGIYDTLKQCAL 240
Query: 241 ISKSAGGIGLSIHNIRASGSYIHGTNGSSNGIVPMLQVFNDTARYVDQGGGKRKGAFAIY 300
ISKSAGGIG+++ IRA+GSYI GTNG+SNG+VPML+V+N+TARYVDQGG KR GAFAIY
Sbjct: 241 ISKSAGGIGVAVSCIRATGSYIAGTNGNSNGLVPMLRVYNNTARYVDQGGNKRPGAFAIY 300
Query: 301 LEPWHADIFEFLDLRKNQGKEECRARDLFYALWVPDLFMERVRDDGKWSLFCPSDASGLA 360
LEPWH DIFEFLDL+KN GKEE RARDLF+ALW+PDLFM+RV + WSL CP++ GL
Sbjct: 301 LEPWHLDIFEFLDLKKNTGKEEQRARDLFFALWIPDLFMKRVETNQDWSLMCPNECPGLD 360
Query: 361 DSWGIEFEHLYSQYEEEGRAKMVISARKLWFEILNSQIETGTPYMLFKDSCNRKSNQQNL 420
+ WG EFE LY+ YE++GR + V+ A++LW+ I+ SQ ETGTPYML+KDSCNRKSNQQNL
Sbjct: 361 EVWGEEFEKLYASYEKQGRVRKVVKAQQLWYAIIESQTETGTPYMLYKDSCNRKSNQQNL 420
Query: 421 GTIKSSNLCTEIVEFSSPEETAVCNLASIALPRYVREKGVPVQSNVSKLVGSRDSKNRLF 480
GTIK SNLCTEIVE++S +E AVCNLAS+AL YV + +
Sbjct: 421 GTIKCSNLCTEIVEYTSKDEVAVCNLASLALNMYV-------------------TSEHTY 461
Query: 481 DFERLAEVTKIITENLNKIIDVNHYPIETTRRSNLRHRPIGIGIQGLADTFILLGLPFES 540
DF++LAEVTK++ NLNKIID+N+YP+ SN RHRPIGIG+QGLAD FIL+ PFES
Sbjct: 462 DFKKLAEVTKVVVRNLNKIIDINYYPVPEACLSNKRHRPIGIGVQGLADAFILMRYPFES 521
Query: 541 PEAQQLNKDIFETIYYHALKASAELAVKDGPYETYFGSPMSKGILQVDMWNITPSDRWDW 600
EAQ LNK IFETIYY AL+AS +LA + GPYETY GSP+SKGILQ DMWN+TP+D WDW
Sbjct: 522 AEAQLLNKQIFETIYYGALEASCDLAKEQGPYETYEGSPVSKGILQYDMWNVTPTDLWDW 581
Query: 601 SSLREMISKNGVRNSLLVAPMPTASTSQILGNNECFEPYTSNIYTRRVLSGEFIVVNKHL 660
L+E I+K G+RNSLL+APMPTAST+QILGNNE EPYTSNIYTRRVLSGEF +VN HL
Sbjct: 582 KVLKEKIAKYGIRNSLLIAPMPTASTAQILGNNESIEPYTSNIYTRRVLSGEFQIVNPHL 641
Query: 661 LKDLTELGLWSHALKTKIIYENGSVSKISEIPEELKAIYKTVWEIKQKTLVDMAADRGCY 720
LKDLTE GLW +K +II NGS+ I EIP++LK +YKTVWEI QKT++ MAA+RG +
Sbjct: 642 LKDLTERGLWHEEMKNQIIACNGSIQSIPEIPDDLKQLYKTVWEISQKTVLKMAAERGAF 701
Query: 721 IDQSQSLNIHMEQPDHGKLTSLHFYAWSKGMKTGMYYLRTRAAADAIKFTVDTSVLNNEK 780
IDQSQSLNIH+ +P++GKLTS+HFY W +G+KTGMYYLRTR AA+ I+FT++ L +++
Sbjct: 702 IDQSQSLNIHIAEPNYGKLTSMHFYGWKQGLKTGMYYLRTRPAANPIQFTLNKEKLKDKE 761
Query: 781 ANRADNDVEA-NLAQVVCSLKNQEECMACGS 810
+ + + N A +VCSL+N++EC+ CGS
Sbjct: 762 KVSKEEEEKERNTAAMVCSLENRDECLMCGS 792
>sp|Q5R919|RIR1_PONAB Ribonucleoside-diphosphate reductase large subunit OS=Pongo abelii
GN=RRM1 PE=2 SV=1
Length = 792
Score = 1100 bits (2845), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 522/811 (64%), Positives = 649/811 (80%), Gaps = 20/811 (2%)
Query: 1 MYVIKRDGRKEPVRFDKITARLKKLSYGLSKEHCDPVLVAQKVCAGVYKGVTTTQLDELA 60
M+VIKRDGR+E V FDKIT+R++KL YGL+ + DP + KV G+Y GVTT +LD LA
Sbjct: 1 MHVIKRDGRQERVMFDKITSRIQKLCYGLNMDFVDPAQITMKVIQGLYSGVTTVELDTLA 60
Query: 61 AETAAAMTVNHPDYALLAGRVAVSNLHKITKNSFSETIKDMYNYYNKRSGKKASLVADDV 120
AETAA +T HPDYA+LA R+AVSNLHK K FS+ ++D+YNY N +GK + +VA
Sbjct: 61 AETAATLTTKHPDYAILAARIAVSNLHKEAKKVFSDVMEDLYNYINPHNGKHSPMVAKST 120
Query: 121 YEIIMKNAACLDGAIIYDRDFDFDYFGFKTLERSYLLKMDSRVVERPQHMLMRVSVGIHK 180
+I++ N L+ AIIYDRDF ++YFGFKTLERSYLLK++ +V ERPQHMLMRVSVGIHK
Sbjct: 121 LDIVLANKDRLNSAIIYDRDFSYNYFGFKTLERSYLLKINGKVAERPQHMLMRVSVGIHK 180
Query: 181 DDTDSALKTYHLMSQHWFTHATPTLFNAGTPQPQLSSCFLLCMKDDSIEGIYDTLKKCAI 240
+D D+A++TY+L+S+ WFTHA+PTLFNAGT +PQLSSCFLL MKDDSIEGIYDTLK+CA+
Sbjct: 181 EDIDAAIETYNLLSERWFTHASPTLFNAGTNRPQLSSCFLLSMKDDSIEGIYDTLKQCAL 240
Query: 241 ISKSAGGIGLSIHNIRASGSYIHGTNGSSNGIVPMLQVFNDTARYVDQGGGKRKGAFAIY 300
ISKSAGGIG+++ IRA+GSYI GTNG+SNG+VPML+V+N+TARYVDQGG KR GAFAIY
Sbjct: 241 ISKSAGGIGVAVSCIRATGSYIAGTNGNSNGLVPMLRVYNNTARYVDQGGNKRPGAFAIY 300
Query: 301 LEPWHADIFEFLDLRKNQGKEECRARDLFYALWVPDLFMERVRDDGKWSLFCPSDASGLA 360
LEPWH DIFEFLDL+KN GKEE RARDLF+ALW+PDLFM+RV + WSL CP++ GL
Sbjct: 301 LEPWHLDIFEFLDLKKNTGKEEQRARDLFFALWIPDLFMKRVETNQDWSLMCPNECPGLD 360
Query: 361 DSWGIEFEHLYSQYEEEGRAKMVISARKLWFEILNSQIETGTPYMLFKDSCNRKSNQQNL 420
+ WG EFE LY+ YE++GR + V+ A++LW+ I+ SQ ETGTPYML+KDSCNRKSNQQNL
Sbjct: 361 EVWGEEFEKLYASYEKQGRVRKVVKAQQLWYAIIESQTETGTPYMLYKDSCNRKSNQQNL 420
Query: 421 GTIKSSNLCTEIVEFSSPEETAVCNLASIALPRYVREKGVPVQSNVSKLVGSRDSKNRLF 480
GTIK S+LCTEIVE++S +E AVCNLAS+AL YV + +
Sbjct: 421 GTIKCSSLCTEIVEYTSKDEVAVCNLASLALNMYV-------------------TSEHTY 461
Query: 481 DFERLAEVTKIITENLNKIIDVNHYPIETTRRSNLRHRPIGIGIQGLADTFILLGLPFES 540
DF++LAEVTK++ NLNKIID+N+YP+ SN RHRPIGIG+QGLAD FIL+ PFES
Sbjct: 462 DFKKLAEVTKVVVRNLNKIIDINYYPVPEACLSNKRHRPIGIGVQGLADAFILMRYPFES 521
Query: 541 PEAQQLNKDIFETIYYHALKASAELAVKDGPYETYFGSPMSKGILQVDMWNITPSDRWDW 600
EAQ LNK IFETIYY AL+AS +LA + GPYETY GSP+SKGILQ DMWN+TP+D WDW
Sbjct: 522 AEAQLLNKQIFETIYYGALEASCDLAKEQGPYETYEGSPVSKGILQYDMWNVTPTDLWDW 581
Query: 601 SSLREMISKNGVRNSLLVAPMPTASTSQILGNNECFEPYTSNIYTRRVLSGEFIVVNKHL 660
L+E I+K G+RNSLL+APMPTAST+QILGNNE EPYTSNIYTRRVLSGEF +VN HL
Sbjct: 582 KLLKEKIAKYGIRNSLLIAPMPTASTAQILGNNESIEPYTSNIYTRRVLSGEFQIVNPHL 641
Query: 661 LKDLTELGLWSHALKTKIIYENGSVSKISEIPEELKAIYKTVWEIKQKTLVDMAADRGCY 720
LKDLTE GLW +K +II NGS+ I EIP++LK +YKTVWEI QKT++ MAA+RG +
Sbjct: 642 LKDLTERGLWHEEMKNQIIACNGSIQSIPEIPDDLKQLYKTVWEISQKTVLKMAAERGAF 701
Query: 721 IDQSQSLNIHMEQPDHGKLTSLHFYAWSKGMKTGMYYLRTRAAADAIKFTVDTSVLNNEK 780
IDQSQSLNIH+ +P++GKLTS+HFY W +G+KTGMYYLRTR AA+ I+FT++ L +++
Sbjct: 702 IDQSQSLNIHIAEPNYGKLTSMHFYGWKQGLKTGMYYLRTRPAANPIQFTLNKEKLKDKE 761
Query: 781 ANRADNDVEA-NLAQVVCSLKNQEECMACGS 810
+ + + N A +VCSL+N++EC+ CGS
Sbjct: 762 KVSKEEEEKERNTAAMVCSLENRDECLMCGS 792
>sp|P79732|RIR1_DANRE Ribonucleoside-diphosphate reductase large subunit OS=Danio rerio
GN=rrm1 PE=2 SV=1
Length = 794
Score = 1097 bits (2838), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 517/813 (63%), Positives = 644/813 (79%), Gaps = 22/813 (2%)
Query: 1 MYVIKRDGRKEPVRFDKITARLKKLSYGLSKEHCDPVLVAQKVCAGVYKGVTTTQLDELA 60
M+VIKRDG +E V FDKIT+R++KL YGL+ + DP + KV G+Y GVTT +LD LA
Sbjct: 1 MHVIKRDGGQEGVMFDKITSRIQKLCYGLNSDFVDPTQITMKVIQGLYSGVTTVELDTLA 60
Query: 61 AETAAAMTVNHPDYALLAGRVAVSNLHKITKNSFSETIKDMYNYYNKRSGKKASLVADDV 120
AETAA T HPDYA+LA R+AVSNLHK TK FSE ++D+YNY N + + + +++ +
Sbjct: 61 AETAATSTTKHPDYAILAARIAVSNLHKETKKVFSEVMEDLYNYVNPLNSRHSPMISKET 120
Query: 121 YEIIMKNAACLDGAIIYDRDFDFDYFGFKTLERSYLLKMDSRVVERPQHMLMRVSVGIHK 180
+I++ N L+ AIIYDRDF +++FGFKTLERSYLLK++ +V ERPQHMLMRVSVGIHK
Sbjct: 121 LDIVLANKDRLNSAIIYDRDFSYNFFGFKTLERSYLLKINGKVAERPQHMLMRVSVGIHK 180
Query: 181 DDTDSALKTYHLMSQHWFTHATPTLFNAGTPQPQLSSCFLLCMKDDSIEGIYDTLKKCAI 240
+D +A++TY+L+S+ WFTHA+PTLFNAGT +PQLSSCFLL MKDDSIEGIYDTLK+CA+
Sbjct: 181 EDIAAAIETYNLLSEKWFTHASPTLFNAGTNRPQLSSCFLLAMKDDSIEGIYDTLKQCAL 240
Query: 241 ISKSAGGIGLSIHNIRASGSYIHGTNGSSNGIVPMLQVFNDTARYVDQGGGKRKGAFAIY 300
ISKSAGGIG+++ IRA+G YI GTNG+SNG+VPML+V N+TARYVDQGG KR GAFA+Y
Sbjct: 241 ISKSAGGIGVAVSCIRATGRYIAGTNGNSNGLVPMLRVNNNTARYVDQGGNKRPGAFAMY 300
Query: 301 LEPWHADIFEFLDLRKNQGKEECRARDLFYALWVPDLFMERVRDDGKWSLFCPSDASGLA 360
LEPWH DIF+FL+L+KN GKEE RARDLFYALW+PDLFM+RV +G WSL CP+D GL
Sbjct: 301 LEPWHFDIFDFLELKKNTGKEEQRARDLFYALWIPDLFMKRVETNGDWSLMCPNDCPGLD 360
Query: 361 DSWGIEFEHLYSQYEEEGRAKMVISARKLWFEILNSQIETGTPYMLFKDSCNRKSNQQNL 420
+ WG EFE LY++YE+EGRAK V+ A++LW+ I+ SQ ETGTPYML+KD+CNRKSN+QNL
Sbjct: 361 ECWGEEFEKLYAKYEQEGRAKRVVKAQQLWYAIIESQTETGTPYMLYKDACNRKSNRQNL 420
Query: 421 GTIKSSNLCTEIVEFSSPEETAVCNLASIALPRYVREKGVPVQSNVSKLVGSRDSKNRLF 480
GTIK SNLCTEIVE++S +E AVCNLASIAL YV + R F
Sbjct: 421 GTIKCSNLCTEIVEYTSADEVAVCNLASIALNMYV-------------------TSERTF 461
Query: 481 DFERLAEVTKIITENLNKIIDVNHYPIETTRRSNLRHRPIGIGIQGLADTFILLGLPFES 540
DF++LA VTK+I +NLNKIID+N+YP++ SN RHRPIGIG+QGLAD FIL+ PFES
Sbjct: 462 DFQKLASVTKVIVKNLNKIIDINYYPVKEAENSNKRHRPIGIGVQGLADAFILMRFPFES 521
Query: 541 PEAQQLNKDIFETIYYHALKASAELAVKDGPYETYFGSPMSKGILQVDMWNITPSDRWDW 600
EAQ LN IFETIYY AL++S ELA + GPY+TY G P+SKGILQ DMW TP+D WDW
Sbjct: 522 TEAQLLNTQIFETIYYAALESSCELAAEYGPYQTYAGCPVSKGILQYDMWEKTPTDLWDW 581
Query: 601 SSLREMISKNGVRNSLLVAPMPTASTSQILGNNECFEPYTSNIYTRRVLSGEFIVVNKHL 660
++L+E I+ +GVRNSLL+APMPTAST+QILGNNE EPYTSNIY RRVLSGEF +VN HL
Sbjct: 582 AALKEKIANDGVRNSLLLAPMPTASTAQILGNNESIEPYTSNIYHRRVLSGEFQIVNPHL 641
Query: 661 LKDLTELGLWSHALKTKIIYENGSVSKISEIPEELKAIYKTVWEIKQKTLVDMAADRGCY 720
LKDLTE GLW+ +K +II +NGS+ I IP++LK +YKTVWEI QKT++ MAADRG Y
Sbjct: 642 LKDLTERGLWNEEMKNQIIAQNGSIQTIPAIPDDLKELYKTVWEISQKTILKMAADRGAY 701
Query: 721 IDQSQSLNIHMEQPDHGKLTSLHFYAWSKGMKTGMYYLRTRAAADAIKFTVDTSVLNNEK 780
IDQSQSLNIH+ +P++GKLTS+HFY W +G+KTGMYYLRT+ A+ I+FT++ L +
Sbjct: 702 IDQSQSLNIHIAEPNYGKLTSMHFYGWKQGLKTGMYYLRTKPGANPIQFTLNKEKLKETQ 761
Query: 781 ANRADNDVEA---NLAQVVCSLKNQEECMACGS 810
+ D E N A +VCSL+N+ EC+ CGS
Sbjct: 762 KTTSSEDEETKERNKAAMVCSLENRHECLMCGS 794
>sp|P21524|RIR1_YEAST Ribonucleoside-diphosphate reductase large chain 1 OS=Saccharomyces
cerevisiae (strain ATCC 204508 / S288c) GN=RNR1 PE=1
SV=2
Length = 888
Score = 1090 bits (2819), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 493/785 (62%), Positives = 632/785 (80%), Gaps = 15/785 (1%)
Query: 1 MYVIKRDGRKEPVRFDKITARLKKLSYGLSKEHCDPVLVAQKVCAGVYKGVTTTQLDELA 60
MYV KRDGRKEPV+FDKITAR+ +L YGL +H D V V Q++ +GVY+GVTT +LD LA
Sbjct: 1 MYVYKRDGRKEPVQFDKITARISRLCYGLDPKHIDAVKVTQRIISGVYEGVTTIELDNLA 60
Query: 61 AETAAAMTVNHPDYALLAGRVAVSNLHKITKNSFSETIKDMYNYYNKRSGKKASLVADDV 120
AET A MT HPDYA LA R+A+SNLHK T FS+ ++D+Y Y N +GK A +++DDV
Sbjct: 61 AETCAYMTTVHPDYATLAARIAISNLHKQTTKQFSKVVEDLYRYVNAATGKPAPMISDDV 120
Query: 121 YEIIMKNAACLDGAIIYDRDFDFDYFGFKTLERSYLLKMDSRVVERPQHMLMRVSVGIHK 180
Y I+M+N L+ AI+YDRDF + YFGFKTLERSYLL+++ +V ERPQH++MRV++GIH
Sbjct: 121 YNIVMENKDKLNSAIVYDRDFQYSYFGFKTLERSYLLRINGQVAERPQHLIMRVALGIHG 180
Query: 181 DDTDSALKTYHLMSQHWFTHATPTLFNAGTPQPQLSSCFLLCMKDDSIEGIYDTLKKCAI 240
D ++AL+TY+LMS +FTHA+PTLFNAGTP+PQ+SSCFL+ MK+DSIEGIYDTLK+CA+
Sbjct: 181 RDIEAALETYNLMSLKYFTHASPTLFNAGTPKPQMSSCFLVAMKEDSIEGIYDTLKECAL 240
Query: 241 ISKSAGGIGLSIHNIRASGSYIHGTNGSSNGIVPMLQVFNDTARYVDQGGGKRKGAFAIY 300
ISK+AGGIGL IHNIR++GSYI GTNG+SNG++PM++VFN+TARYVDQGG KR GAFA+Y
Sbjct: 241 ISKTAGGIGLHIHNIRSTGSYIAGTNGTSNGLIPMIRVFNNTARYVDQGGNKRPGAFALY 300
Query: 301 LEPWHADIFEFLDLRKNQGKEECRARDLFYALWVPDLFMERVRDDGKWSLFCPSDASGLA 360
LEPWHADIF+F+D+RKN GKEE RARDLF ALW+PDLFM+RV ++G W+LF P+ A GL+
Sbjct: 301 LEPWHADIFDFIDIRKNHGKEEIRARDLFPALWIPDLFMKRVEENGTWTLFSPTSAPGLS 360
Query: 361 DSWGIEFEHLYSQYEEEGRAKMVISARKLWFEILNSQIETGTPYMLFKDSCNRKSNQQNL 420
D +G EFE LY++YE+EGR K I A+KLW+ IL +Q ETGTP++++KD+CNRKSNQ+NL
Sbjct: 361 DCYGDEFEALYTRYEKEGRGK-TIKAQKLWYSILEAQTETGTPFVVYKDACNRKSNQKNL 419
Query: 421 GTIKSSNLCTEIVEFSSPEETAVCNLASIALPRYVREKGVPVQSNVSKLVGSRDSKNRLF 480
G IKSSNLC EIVE+S+P+ETAVCNLAS+ALP ++ S D K +
Sbjct: 420 GVIKSSNLCCEIVEYSAPDETAVCNLASVALPAFIET--------------SEDGKTSTY 465
Query: 481 DFERLAEVTKIITENLNKIIDVNHYPIETTRRSNLRHRPIGIGIQGLADTFILLGLPFES 540
+F++L E+ K++T NLN++ID N+YP+E R+SN+RHRPI +G+QGLADTF+LL LPF+S
Sbjct: 466 NFKKLHEIAKVVTRNLNRVIDRNYYPVEEARKSNMRHRPIALGVQGLADTFMLLRLPFDS 525
Query: 541 PEAQQLNKDIFETIYYHALKASAELAVKDGPYETYFGSPMSKGILQVDMWNITPSDRWDW 600
EA+ LN IFETIY+ +++AS ELA KDGPYET+ GSP S+GILQ DMW+ P WDW
Sbjct: 526 EEARLLNIQIFETIYHASMEASCELAQKDGPYETFQGSPASQGILQFDMWDQKPYGMWDW 585
Query: 601 SSLREMISKNGVRNSLLVAPMPTASTSQILGNNECFEPYTSNIYTRRVLSGEFIVVNKHL 660
+LR+ I K+GVRNSL +APMPTASTSQILG NECFEP TSN+Y+RRVLSGEF VVN +L
Sbjct: 586 DTLRKDIMKHGVRNSLTMAPMPTASTSQILGYNECFEPVTSNMYSRRVLSGEFQVVNPYL 645
Query: 661 LKDLTELGLWSHALKTKIIYENGSVSKISEIPEELKAIYKTVWEIKQKTLVDMAADRGCY 720
L+DL +LG+W +K +I +NGS+ + +P+ELK +YKTVWEI QKT+++MAADR Y
Sbjct: 646 LRDLVDLGIWDEGMKQYLITQNGSIQGLPNVPQELKDLYKTVWEISQKTIINMAADRSVY 705
Query: 721 IDQSQSLNIHMEQPDHGKLTSLHFYAWSKGMKTGMYYLRTRAAADAIKFTVDTSVLNNEK 780
IDQS SLN+ + P GKLTS+HFY W KG+KTGMYYLRT+AA+ AI+FT+D + +
Sbjct: 706 IDQSHSLNLFLRAPTMGKLTSMHFYGWKKGLKTGMYYLRTQAASAAIQFTIDQKIADQAT 765
Query: 781 ANRAD 785
N AD
Sbjct: 766 ENVAD 770
>sp|P21672|RIR3_YEAST Ribonucleoside-diphosphate reductase large chain 2 OS=Saccharomyces
cerevisiae (strain ATCC 204508 / S288c) GN=RNR3 PE=1
SV=4
Length = 869
Score = 1087 bits (2811), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 494/775 (63%), Positives = 622/775 (80%), Gaps = 15/775 (1%)
Query: 1 MYVIKRDGRKEPVRFDKITARLKKLSYGLSKEHCDPVLVAQKVCAGVYKGVTTTQLDELA 60
MYVIKRDGRKEPV+FDKIT+R+ +LSYGL D V V Q++ +GVY GVTT +LD LA
Sbjct: 1 MYVIKRDGRKEPVQFDKITSRITRLSYGLDPNRIDAVKVTQRIISGVYSGVTTVELDNLA 60
Query: 61 AETAAAMTVNHPDYALLAGRVAVSNLHKITKNSFSETIKDMYNYYNKRSGKKASLVADDV 120
AET A MT HPDYA LA R+A+SNLHK T FS+ I+D++++ N +GK A +++D++
Sbjct: 61 AETCAYMTTVHPDYATLAARIAISNLHKQTTKQFSKVIEDLHDWINPATGKHAPMISDEI 120
Query: 121 YEIIMKNAACLDGAIIYDRDFDFDYFGFKTLERSYLLKMDSRVVERPQHMLMRVSVGIHK 180
Y I+M+N L+ AI+YDRDF + YFGFKTLERSYLL+++ V ERPQH++MRV++GIH
Sbjct: 121 YNIVMENKDTLNSAIVYDRDFQYTYFGFKTLERSYLLRLNGEVAERPQHLVMRVALGIHG 180
Query: 181 DDTDSALKTYHLMSQHWFTHATPTLFNAGTPQPQLSSCFLLCMKDDSIEGIYDTLKKCAI 240
D +S LKTY+LMS +FTHA+PTLFNAGTP PQ+SSCFL+ MKDDSIEGIYDTLK+CA+
Sbjct: 181 SDIESVLKTYNLMSLRYFTHASPTLFNAGTPHPQMSSCFLIAMKDDSIEGIYDTLKECAM 240
Query: 241 ISKSAGGIGLSIHNIRASGSYIHGTNGSSNGIVPMLQVFNDTARYVDQGGGKRKGAFAIY 300
ISK+AGG+GL I+NIR++GSYI GTNG+SNG++PM++VFN+TARYVDQGG KR GAFA++
Sbjct: 241 ISKTAGGVGLHINNIRSTGSYIAGTNGTSNGLIPMIRVFNNTARYVDQGGNKRPGAFALF 300
Query: 301 LEPWHADIFEFLDLRKNQGKEECRARDLFYALWVPDLFMERVRDDGKWSLFCPSDASGLA 360
LEPWHADIF+F+D+RK GKEE RARDLF ALW+PDLFM+RV++DG W+LF PS A GL
Sbjct: 301 LEPWHADIFDFVDIRKTHGKEEIRARDLFPALWIPDLFMKRVQEDGPWTLFSPSAAPGLD 360
Query: 361 DSWGIEFEHLYSQYEEEGRAKMVISARKLWFEILNSQIETGTPYMLFKDSCNRKSNQQNL 420
D WG EFE LY++YE EGR K I A+KLW+ IL +Q ETGTP+M++KD+CNRK+NQQNL
Sbjct: 361 DVWGDEFEELYTRYEREGRGK-TIKAQKLWYAILQAQTETGTPFMVYKDACNRKTNQQNL 419
Query: 421 GTIKSSNLCTEIVEFSSPEETAVCNLASIALPRYVREKGVPVQSNVSKLVGSRDSKNRLF 480
GTIKSSNLC EIVE+SSP+ETAVCNLASIALP +V S D K +
Sbjct: 420 GTIKSSNLCCEIVEYSSPDETAVCNLASIALPAFVEV--------------SEDGKTASY 465
Query: 481 DFERLAEVTKIITENLNKIIDVNHYPIETTRRSNLRHRPIGIGIQGLADTFILLGLPFES 540
+FERL E+ K+IT NLN++ID N+YP+ R SN++HRPI +G+QGLADT+++L LPFES
Sbjct: 466 NFERLHEIAKVITHNLNRVIDRNYYPVPEARNSNMKHRPIALGVQGLADTYMMLRLPFES 525
Query: 541 PEAQQLNKDIFETIYYHALKASAELAVKDGPYETYFGSPMSKGILQVDMWNITPSDRWDW 600
EAQ LNK IFETIY+ L+AS ELA K+G Y T+ GSP SKGILQ DMWN P WDW
Sbjct: 526 EEAQTLNKQIFETIYHATLEASCELAQKEGKYSTFEGSPASKGILQFDMWNAKPFGMWDW 585
Query: 601 SSLREMISKNGVRNSLLVAPMPTASTSQILGNNECFEPYTSNIYTRRVLSGEFIVVNKHL 660
+LR+ I K+G+RNSL +APMPTASTSQILG NECFEP TSN+Y+RRVLSGEF VVN +L
Sbjct: 586 ETLRKDIVKHGLRNSLTMAPMPTASTSQILGYNECFEPVTSNMYSRRVLSGEFQVVNPYL 645
Query: 661 LKDLTELGLWSHALKTKIIYENGSVSKISEIPEELKAIYKTVWEIKQKTLVDMAADRGCY 720
L+DL +LG+W ++K +I +NGS+ + +P+ELK +YKTVWEI QKT+++MAADR Y
Sbjct: 646 LRDLVDLGIWDDSMKQYLITQNGSIQGLPNVPQELKELYKTVWEISQKTIINMAADRAIY 705
Query: 721 IDQSQSLNIHMEQPDHGKLTSLHFYAWSKGMKTGMYYLRTRAAADAIKFTVDTSV 775
IDQS SLN+ ++ P GK+TS+HFY W KG+KTGMYYLRT+AA+ AI+FT+D V
Sbjct: 706 IDQSHSLNLFLQAPSMGKITSMHFYGWKKGLKTGMYYLRTQAASAAIQFTIDQEV 760
>sp|P48591|RIR1_DROME Ribonucleoside-diphosphate reductase large subunit OS=Drosophila
melanogaster GN=RnrL PE=1 SV=2
Length = 812
Score = 1085 bits (2805), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 503/820 (61%), Positives = 638/820 (77%), Gaps = 29/820 (3%)
Query: 1 MYVIKRDGRKEPVRFDKITARLKKLSYGLSKEHCDPVLVAQKVCAGVYKGVTTTQLDELA 60
+YVIKRDGR+E V FDKIT+R++KL Y L+ + DPV + +V G+Y GVTT +LD LA
Sbjct: 12 LYVIKRDGRQEEVHFDKITSRIQKLCYNLNMDFVDPVTITLQVINGLYCGVTTQELDNLA 71
Query: 61 AETAAAMTVNHPDYALLAGRVAVSNLHKITKNSFSETIKDMYNYYNKRSGKKASLVADDV 120
AE AA +T NHPDYA+LA R+AVSNLHK TK +FS+ +D+YN+ NK + +K LV++
Sbjct: 72 AEIAAGLTCNHPDYAILAARIAVSNLHKETKKAFSDVFEDLYNHVNKETNQKVPLVSEFH 131
Query: 121 YEIIMKNAACLDGAIIYDRDFDFDYFGFKTLERSYLLKMDSRVVERPQHMLMRVSVGIHK 180
Y ++ KNA L+ +IIYDRDF ++YFGFKTLERSYLLK + ++ ERPQHMLMRV++GIH
Sbjct: 132 YNVVKKNATRLNSSIIYDRDFGYNYFGFKTLERSYLLKRNGKIAERPQHMLMRVAIGIHG 191
Query: 181 DDTDSALKTYHLMSQHWFTHATPTLFNAGTPQPQLSSCFLLCMKDDSIEGIYDTLKKCAI 240
+D D+A++TY+L+S+ +FTHA+PTLF A T +PQLSSCFLL M DSIEGI+ ++++CA+
Sbjct: 192 EDIDAAVETYNLLSERYFTHASPTLFAAATNRPQLSSCFLLTMTADSIEGIFKSVEQCAM 251
Query: 241 ISKSAGGIGLSIHNIRASGSYIHGTNGSSNGIVPMLQVFNDTARYVDQGGGKRKGAFAIY 300
ISKSAGGIGL++H IRA G+ I GTNG+SNG+VPML+VFN+ ARYVDQGGGKR GAFAIY
Sbjct: 252 ISKSAGGIGLNVHCIRAKGTSICGTNGTSNGLVPMLRVFNNVARYVDQGGGKRPGAFAIY 311
Query: 301 LEPWHADIFEFLDLRKNQGKEECRARDLFYALWVPDLFMERVRDDGKWSLFCPSDASGLA 360
LEPWH+D+FEFL+L+KN GKEE RARDLFYALW+PDLFM+RV +G WSL CP GL
Sbjct: 312 LEPWHSDVFEFLELKKNTGKEENRARDLFYALWIPDLFMKRVEANGDWSLMCPHKCPGLH 371
Query: 361 DSWGIEFEHLYSQYEEEGRAKMVISARKLWFEILNSQIETGTPYMLFKDSCNRKSNQQNL 420
D WG EFE LY +YE+EGRA + A+ LWF I+ +Q+ETG PYMLFKD+CNRKSNQQN+
Sbjct: 372 DVWGDEFEKLYEKYEQEGRANRTVKAQSLWFAIIEAQVETGNPYMLFKDACNRKSNQQNV 431
Query: 421 GTIKSSNLCTEIVEFSSPEETAVCNLASIALPRYVREKGVPVQSNVSKLVGSRDSKNRLF 480
GTIK SNLCTEIVE+S+P+E AVCNLASIAL +V + + +
Sbjct: 432 GTIKCSNLCTEIVEYSAPDEIAVCNLASIALNMFV-------------------TPEKTY 472
Query: 481 DFERLAEVTKIITENLNKIIDVNHYPIETTRRSNLRHRPIGIGIQGLADTFILLGLPFES 540
DF++L EVTKI+T+NLNKIID+N+YP+ R+SNLRHRP+GIGIQG AD IL+ P+ES
Sbjct: 473 DFKKLKEVTKIVTKNLNKIIDINYYPLPEARKSNLRHRPVGIGIQGFADALILMRFPYES 532
Query: 541 PEAQQLNKDIFETIYYHALKASAELAVKDGPYETYFGSPMSKGILQVDMWNITPSDRWDW 600
EA LN+ IFETIYY AL+AS ELA +GPYETY GSP+SKGILQ DMW+ P++ WDW
Sbjct: 533 EEAGLLNQQIFETIYYGALEASCELAQTEGPYETYEGSPVSKGILQYDMWDKVPTNLWDW 592
Query: 601 SSLREMISKNGVRNSLLVAPMPTASTSQILGNNECFEPYTSNIYTRRVLSGEFIVVNKHL 660
L+E I +GVRNSLLVAPMPTAST+QI+GNNE FEPYT+NIYTRRVLSGEF VVN HL
Sbjct: 593 QKLKESIRMHGVRNSLLVAPMPTASTAQIMGNNESFEPYTTNIYTRRVLSGEFQVVNHHL 652
Query: 661 LKDLTELGLWSHALKTKIIYENGSVSKISEIPEELKAIYKTVWEIKQKTLVDMAADRGCY 720
L+DLTEL LW +K +II GS+ I IP +++ +YKTVWEI K+ + MAADRG +
Sbjct: 653 LRDLTELDLWDDDMKNQIISSRGSIQNIETIPPKVRDLYKTVWEISVKSTIKMAADRGAF 712
Query: 721 IDQSQSLNIHMEQPDHGKLTSLHFYAWSKGMKTGMYYLRTRAAADAIKFTVDTS----VL 776
IDQSQS NIH+ +P++GKLTS+HFY+W G+KTGMYYLRT+ AA+AI+FTV+ +
Sbjct: 713 IDQSQSFNIHVAEPNYGKLTSIHFYSWKAGLKTGMYYLRTKPAANAIQFTVNKKQGAVSM 772
Query: 777 NNEKA------NRADNDVEANLAQVVCSLKNQEECMACGS 810
N + + + D E +A +VCSL+N++ CM+CGS
Sbjct: 773 NGQNGTAEGSPQKYEEDRERKMADMVCSLENKDACMSCGS 812
>sp|Q03604|RIR1_CAEEL Ribonucleoside-diphosphate reductase large subunit
OS=Caenorhabditis elegans GN=rnr-1 PE=3 SV=1
Length = 788
Score = 1079 bits (2791), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 505/808 (62%), Positives = 635/808 (78%), Gaps = 30/808 (3%)
Query: 2 YVIKRDGRKEPVRFDKITARLKKLSYGLSKEHCDPVLVAQKVCAGVYKGVTTTQLDELAA 61
YV+KRDGRKE V FDKIT+R++KLSYGL+ + DPV VA KV +G+YKGVTT +LD LAA
Sbjct: 8 YVVKRDGRKEDVHFDKITSRIQKLSYGLNMDFVDPVAVAIKVISGLYKGVTTVELDNLAA 67
Query: 62 ETAAAMTVNHPDYALLAGRVAVSNLHKITKNSFSETIKDMYNYYNKRSGKKASLVADDVY 121
ETAA+MT HP+YALLA R+AVSNLHK T FSE +K ++ +++ +GK A +++D+ +
Sbjct: 68 ETAASMTTQHPEYALLAARIAVSNLHKKTNKVFSEVMKTLHEFHHPHTGKHAPMISDETW 127
Query: 122 EIIMKNAACLDGAIIYDRDFDFDYFGFKTLERSYLLKMDSRVVERPQHMLMRVSVGIHKD 181
II KNA L+ AI+YDRD+ + YFGFKTLERSYLLK++ +VERPQ MLMRVS+GIH D
Sbjct: 128 AIIEKNADKLNSAIVYDRDYSYTYFGFKTLERSYLLKINKEIVERPQQMLMRVSIGIHGD 187
Query: 182 DTDSALKTYHLMSQHWFTHATPTLFNAGTPQPQLSSCFLLCMKDDSIEGIYDTLKKCAII 241
D SA++TY+LMS+ + THA+PTLFN+GT +PQ+SSCFLL M +DSI GIYDTLK+CA+I
Sbjct: 188 DITSAIETYNLMSERYMTHASPTLFNSGTCRPQMSSCFLLTMSEDSILGIYDTLKQCALI 247
Query: 242 SKSAGGIGLSIHNIRASGSYIHGTNGSSNGIVPMLQVFNDTARYVDQGGGKRKGAFAIYL 301
SKSAGGIGL++H IRA+GS I GTNG+SNG++PML+V+N+TARYVDQGG KR GAFAIYL
Sbjct: 248 SKSAGGIGLNVHKIRATGSVIAGTNGTSNGLIPMLRVYNNTARYVDQGGNKRPGAFAIYL 307
Query: 302 EPWHADIFEFLDLRKNQGKEECRARDLFYALWVPDLFMERVRDDGKWSLFCPSDASGLAD 361
EPWHADIFEF+ LRKN G EE RARDLF ALW+PDLFM+RV D +WSL CP + GL D
Sbjct: 308 EPWHADIFEFVSLRKNTGPEEERARDLFLALWIPDLFMKRVEKDQEWSLMCPCECPGLDD 367
Query: 362 SWGIEFEHLYSQYEEEGRAKMVISARKLWFEILNSQIETGTPYMLFKDSCNRKSNQQNLG 421
WG EFE LY++YE EGR + + ARKLW I+++QIETG PY+ +KD+ NRKSNQQNLG
Sbjct: 368 CWGEEFEALYAKYEAEGRVRKTVKARKLWEHIVSNQIETGLPYITYKDAANRKSNQQNLG 427
Query: 422 TIKSSNLCTEIVEFSSPEETAVCNLASIALPRYVREKGVPVQSNVSKLVGSRDSKNRLFD 481
TIK SNLCTEI+E+S+P+E AVCNLASIAL RYV + + FD
Sbjct: 428 TIKCSNLCTEIIEYSAPDEIAVCNLASIALNRYV-------------------TPEKKFD 468
Query: 482 FERLAEVTKIITENLNKIIDVNHYPIETTRRSNLRHRPIGIGIQGLADTFILLGLPFESP 541
F +LAEVTK+IT NLNKIIDVN+YP+E R SN+RHRPIG+G+QGLAD F+L+ PF S
Sbjct: 469 FVKLAEVTKVITRNLNKIIDVNYYPVEEARNSNMRHRPIGLGVQGLADCFMLMRYPFTSA 528
Query: 542 EAQQLNKDIFETIYYHALKASAELAVKDGPYETYFGSPMSKGILQVDMWNITPSDRWDWS 601
EA+ LNK IFETIYY AL+AS ELA +GPY TY GSP+SKG LQ DMW +TP+D+ DW+
Sbjct: 529 EARDLNKRIFETIYYAALEASCELAELNGPYSTYEGSPVSKGQLQFDMWGVTPTDQCDWA 588
Query: 602 SLREMISKNGVRNSLLVAPMPTASTSQILGNNECFEPYTSNIYTRRVLSGEFIVVNKHLL 661
+LR+ I+K+G+RNSLL+APMPTAST+QILGNNE EPYTSNIY+RRVLSG+F +VN H+L
Sbjct: 589 TLRKKIAKHGIRNSLLMAPMPTASTAQILGNNESIEPYTSNIYSRRVLSGDFQIVNPHML 648
Query: 662 KDLTELGLWSHALKTKIIYENGSVSKISEIPEELKAIYKTVWEIKQKTLVDMAADRGCYI 721
KDL E GLW+ +K ++I NGS+ I IP ++K +Y+TVWEI QK +++MAADRG YI
Sbjct: 649 KDLVERGLWTDEMKNRLIANNGSIQNIDGIPSDIKELYRTVWEISQKDIIEMAADRGAYI 708
Query: 722 DQSQSLNIHMEQPDHGKLTSLHFYAWSKGMKTGMYYLRTRAAADAIKFTVDTSVL-NNEK 780
DQSQSLNIHM +P + +TS+HFY W KG+KTGMYYLRT+ A +A++FTVD + L N++
Sbjct: 709 DQSQSLNIHMAKPSYAGITSMHFYGWKKGLKTGMYYLRTKPAVNAVQFTVDKNALKTNQQ 768
Query: 781 ANRADNDVEANLAQVVCSLKNQEECMAC 808
A + A +A+ E C+ C
Sbjct: 769 A-----ETPATVAE-----SQDEGCLMC 786
>sp|P36602|RIR1_SCHPO Ribonucleoside-diphosphate reductase large chain
OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843)
GN=cdc22 PE=1 SV=2
Length = 811
Score = 1077 bits (2786), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 506/831 (60%), Positives = 648/831 (77%), Gaps = 41/831 (4%)
Query: 1 MYVIKRDGRKEPVRFDKITARLKKLSYGLSKEHCDPVLVAQKVCAGVYKGVTTTQLDELA 60
M+V KRDGR+E V FDKITAR+ +L YGL +H DPV + QKV +GVY GVTT +LD LA
Sbjct: 1 MFVYKRDGRQEKVAFDKITARVSRLCYGLDSDHVDPVEITQKVISGVYPGVTTIELDNLA 60
Query: 61 AETAAAMTVNHPDYALLAGRVAVSNLHKITKNSFSETIKDMYNYYNKRSGKKASLVADDV 120
AETAA MT HPDYA+LA R+AVSNLHK T+ FS ++ +++Y N ++ K A +++D +
Sbjct: 61 AETAATMTTKHPDYAILAARIAVSNLHKQTEKVFSTVVQQLHDYVNPKTDKPAPMISDKI 120
Query: 121 YEIIMKNAACLDGAIIYDRDFDFDYFGFKTLERSYLLKMDSRVVERPQHMLMRVSVGIHK 180
Y+I+MK+ LD AIIYDRDF +++FGFKTLERSYLL++D +V ERPQHM+MRV+VGIH
Sbjct: 121 YDIVMKHKDELDSAIIYDRDFTYNFFGFKTLERSYLLRIDGKVAERPQHMIMRVAVGIHG 180
Query: 181 DDTDSALKTYHLMSQHWFTHATPTLFNAGTPQPQLSSCFLLCMKDDSIEGIYDTLKKCAI 240
+D ++A++TY+LMSQ +FTHA+PTLFNAGTP+PQLSSCFL+ MKDDSIEGIYDTLK CA+
Sbjct: 181 EDIEAAIETYNLMSQRYFTHASPTLFNAGTPRPQLSSCFLVTMKDDSIEGIYDTLKMCAM 240
Query: 241 ISKSAGGIGLSIHNIRASGSYIHGTNGSSNGIVPMLQVFNDTARYVDQGGGKRKGAFAIY 300
ISK+AGGIG++IHNIRA+GSYI GTNG+SNGIVPM++V+N+TARYVDQGG KR GAFA Y
Sbjct: 241 ISKTAGGIGINIHNIRATGSYIAGTNGTSNGIVPMIRVYNNTARYVDQGGNKRPGAFAAY 300
Query: 301 LEPWHADIFEFLDLRKNQGKEECRARDLFYALWVPDLFMERVRDDGKWSLFCPSDASGLA 360
LEPWHAD+ +FL+LRK G E+ RAR++FYALW+PDLFM+RV + +W+ FCP++A GLA
Sbjct: 301 LEPWHADVMDFLELRKTHGNEDFRAREMFYALWIPDLFMQRVERNEQWTFFCPNEAPGLA 360
Query: 361 DSWGIEFEHLYSQYEEEGRAKMVISARKLWFEILNSQIETGTPYMLFKDSCNRKSNQQNL 420
D WG EF LY +YE+E R + + A+K+W+ IL SQ+ETG P+ML+KDSCNRKSNQ+N+
Sbjct: 361 DVWGDEFVALYEKYEKENRGRRSLPAQKVWYAILQSQVETGNPFMLYKDSCNRKSNQKNV 420
Query: 421 GTIKSSNLCTEIVEFSSPEETAVCNLASIALPRYVREKGVPVQSNVSKLVGSRDSKNRLF 480
GTI+ SNLCTEIVE+SSP+E AVCNLAS+ALP ++ +D K +
Sbjct: 421 GTIRCSNLCTEIVEYSSPDEVAVCNLASVALPTFI-----------------KDGK---Y 460
Query: 481 DFERLAEVTKIITENLNKIIDVNHYPIETTRRSNLRHRPIGIGIQGLADTFILLGLPFES 540
+F++L +V K++T NLNKIIDVN+YP+ RRSN+RHRP+G+G+QGLAD F L LPFES
Sbjct: 461 NFQKLHDVVKVVTRNLNKIIDVNYYPVPEARRSNMRHRPVGLGVQGLADAFFALRLPFES 520
Query: 541 PEAQQLNKDIFETIYYHALKASAELAVKDGPYETYFGSPMSKGILQVDMWNITPSDRWDW 600
A++LN IFETIY+ AL+AS E+A +G YE+Y GSP S+GILQ DMWN+ P+D WDW
Sbjct: 521 AGAKKLNIQIFETIYHAALEASCEIAQVEGTYESYEGSPASQGILQYDMWNVNPTDLWDW 580
Query: 601 SSLREMISKNGVRNSLLVAPMPTASTSQILGNNECFEPYTSNIYTRRVLSGEFIVVNKHL 660
+ L+E I+K+G+RNSLLVAPMPTASTSQILG NECFEPYTSN+Y RRVLSGEF +VN L
Sbjct: 581 AELKEKIAKHGIRNSLLVAPMPTASTSQILGFNECFEPYTSNMYQRRVLSGEFQIVNPWL 640
Query: 661 LKDLTELGLWSHALKTKIIYENGSVSKISEIPEELKAIYKTVWEIKQKTLVDMAADRGCY 720
LKDL E LW+ +K K++ +GS+ I EIP++LK +YKTVWEI QKT++D AADRG +
Sbjct: 641 LKDLVERDLWNEDMKNKLVMLDGSIQAIPEIPQDLKDLYKTVWEISQKTVIDYAADRGPF 700
Query: 721 IDQSQSLNIHMEQPDHGKLTSLHFYAWSKGMKTGMYYLRTRAAADAIKFTVDTSVL--NN 778
IDQSQSLNIH++ P +GK+TS+HFY W KG+KTGMYYLRT AA+ AIKFTVD L N
Sbjct: 701 IDQSQSLNIHLKDPSYGKITSMHFYGWKKGLKTGMYYLRTMAASAAIKFTVDPVALRARN 760
Query: 779 EKAN-----------RADNDVEANLAQV--------VCSLKNQEECMACGS 810
E++N +A+ E ++ CS+KN E C C +
Sbjct: 761 EESNEENKKPVIKNGKAEISAEPTKEEIDIYNEKVLACSIKNPEACEMCSA 811
>sp|Q54Q71|RIR1_DICDI Ribonucleoside-diphosphate reductase large subunit OS=Dictyostelium
discoideum GN=rnrA PE=3 SV=1
Length = 870
Score = 1069 bits (2764), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 497/785 (63%), Positives = 627/785 (79%), Gaps = 16/785 (2%)
Query: 1 MYVIKRDGRKEPVRFDKITARLK---KLSYGLSKEHCDPVLVAQKVCAGVYKGVTTTQLD 57
MYV+KRDG KE V FDKIT+R+ ++ L+ + DP+ VAQKV +GV+ GV TT+LD
Sbjct: 16 MYVVKRDGTKENVSFDKITSRISFLCEMEPKLNSDIVDPIEVAQKVVSGVFPGVKTTELD 75
Query: 58 ELAAETAAAMTVNHPDYALLAGRVAVSNLHKITKNSFSETIKDMYNYYNKRSGKKASLVA 117
LAAETAA M+ HPDY +LA R++VSNLHK T SF ET+K Y + N +S A LV+
Sbjct: 76 NLAAETAAYMSTRHPDYGILAARISVSNLHKQTSKSFVETVKKQYEFINPKSNLLAPLVS 135
Query: 118 DDVYEIIMKNAACLDGAIIYDRDFDFDYFGFKTLERSYLLKMDSRVVERPQHMLMRVSVG 177
++YEI+MK+ L+ I Y RDFD+D+FGFKTLERSYL +++ ++VERPQHMLMRVS+G
Sbjct: 136 KELYEIVMKHGERLESVIDYYRDFDYDFFGFKTLERSYLHRINGKIVERPQHMLMRVSIG 195
Query: 178 IHKDDTDSALKTYHLMSQHWFTHATPTLFNAGTPQPQLSSCFLLCMKDDSIEGIYDTLKK 237
IH +D +SA+ TY +S+ FTHATPTLFNAGTP PQ+SSCFL+ MK+DSI+GIYDTLK+
Sbjct: 196 IHGEDLESAINTYKRLSEKLFTHATPTLFNAGTPSPQMSSCFLVQMKEDSIDGIYDTLKQ 255
Query: 238 CAIISKSAGGIGLSIHNIRASGSYIHGTNGSSNGIVPMLQVFNDTARYVDQGGGKRKGAF 297
CA+ISKSAGGIG+++H IRA+ SYI GTNG+SNG+VPML+VFNDTARYVDQGGGKRKGAF
Sbjct: 256 CALISKSAGGIGIAVHKIRAAQSYIRGTNGTSNGLVPMLRVFNDTARYVDQGGGKRKGAF 315
Query: 298 AIYLEPWHADIFEFLDLRKNQGKEECRARDLFYALWVPDLFMERVRDDGKWSLFCPSDAS 357
A+YLEPWHAD+FEF+DL+KN GKEE RARDLFYALWV D+FMERV +G W+LFCP++A
Sbjct: 316 AVYLEPWHADVFEFIDLKKNTGKEEMRARDLFYALWVSDIFMERVEQNGDWALFCPNEAP 375
Query: 358 GLADSWGIEFEHLYSQYEE-EGRAKMVISARKLWFEILNSQIETGTPYMLFKDSCNRKSN 416
GLA++ E LY +YE + VI A++LWF I+ SQ+ETGTP++L+KD+CN KSN
Sbjct: 376 GLAETHSEEHRALYLKYEATPDLPRRVIKAQELWFAIMESQVETGTPFILYKDACNAKSN 435
Query: 417 QQNLGTIKSSNLCTEIVEFSSPEETAVCNLASIALPRYVREKGVPVQSNVSKLVGSRDSK 476
Q+NLGTI SSNLCTEI++++SP+E AVCNLASIALP++VR+K VGS D K
Sbjct: 436 QKNLGTISSSNLCTEIIQYTSPDEIAVCNLASIALPKFVRQK-----------VGSTDPK 484
Query: 477 NRLFDFERLAEVTKIITENLNKIIDVNHYPIETTRRSNLRHRPIGIGIQGLADTFILLGL 536
+ FD + L E+TK+IT NLN IID N+YP+ + SNLRHRPIGIGIQGLAD FI + +
Sbjct: 485 EKEFDHQFLFEITKLITVNLNVIIDRNYYPVAEAKTSNLRHRPIGIGIQGLADVFIKMRM 544
Query: 537 PFESPEAQQLNKDIFETIYYHALKASAELAVKDGPYETYFGSPMSKGILQVDMWNITPSD 596
PF+S A +LN +I ETIY+ AL AS ELA++DG YE++ GSP SKGILQ DMWN+TPS
Sbjct: 545 PFDSVAAAKLNVEIAETIYFAALTASHELAIRDGTYESFKGSPASKGILQFDMWNVTPSS 604
Query: 597 RWDWSSLRE-MISKNGVRNSLLVAPMPTASTSQILGNNECFEPYTSNIYTRRVLSGEFIV 655
RW+W+ L++ +++K G+RNSLL+APMPTASTSQILGNNECFEPYTSNIY+RRVL+GEF +
Sbjct: 605 RWNWAELKDNIVNKGGLRNSLLIAPMPTASTSQILGNNECFEPYTSNIYSRRVLAGEFTI 664
Query: 656 VNKHLLKDLTELGLWSHALKTKIIYENGSVSKISEIPEELKAIYKTVWEIKQKTLVDMAA 715
VNK LL+DL ELG+WS +K +I+ GS+ I IP++LK +YKTVWEI+Q+TL+DMAA
Sbjct: 665 VNKQLLEDLMELGIWSPEMKNQIVAARGSIQSIGGIPDDLKELYKTVWEIRQRTLIDMAA 724
Query: 716 DRGCYIDQSQSLNIHMEQPDHGKLTSLHFYAWSKGMKTGMYYLRTRAAADAIKFTVDTSV 775
DRG +IDQSQS N+ + +P KLTS+HFY+W KG+KTGMYYLRTR AADAI+FTVD V
Sbjct: 725 DRGAFIDQSQSFNVFIAEPTFAKLTSMHFYSWKKGLKTGMYYLRTRPAADAIQFTVDPIV 784
Query: 776 LNNEK 780
K
Sbjct: 785 SQTPK 789
>sp|P50648|RIR1_PLAF4 Ribonucleoside-diphosphate reductase large subunit OS=Plasmodium
falciparum (isolate Dd2) GN=RNR1 PE=2 SV=1
Length = 806
Score = 1052 bits (2721), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 495/824 (60%), Positives = 630/824 (76%), Gaps = 36/824 (4%)
Query: 1 MYVIKRDGRKEPVRFDKITARLKKLSYGLSKEHCDPVLVAQKVCAGVYKGVTTTQLDELA 60
MYV+ R G +E + FD+I R+++LSYGL E DP V Q V G+Y G+ T +LDELA
Sbjct: 1 MYVLNRKGEEEDISFDQILKRIQRLSYGLH-ELVDPARVTQGVINGMYSGIKTCELDELA 59
Query: 61 AETAAAMTVNHPDYALLAGRVAVSNLHKITKNSFSETIKDMYNYYNKRSGKKASLVADDV 120
A+T A M HPD+++LA R+ NLHK T + +E + +Y Y + R G+ ASL++ +V
Sbjct: 60 AQTCAYMATTHPDFSILAARITTDNLHKNTSDDVAEVAEALYTYKDVR-GRPASLISKEV 118
Query: 121 YEIIMKNAACLDGAIIYDRDFDFDYFGFKTLERSYLLKMDSRVVERPQHMLMRVSVGIHK 180
Y+ I+ + L+ I Y RDF++DYFGFKTLERSYLL+++++++ERPQH+LMRVS+GIH
Sbjct: 119 YDFILLHKDRLNKEIDYTRDFNYDYFGFKTLERSYLLRINNKIIERPQHLLMRVSIGIHI 178
Query: 181 DDTDSALKTYHLMSQHWFTHATPTLFNAGTPQPQLSSCFLLCMKDDSIEGIYDTLKKCAI 240
DD D AL+TYHLMSQ +FTHATPTLFN+GTP+PQ+SSCFLL MK DSIEGI++TLK+CA+
Sbjct: 179 DDIDKALETYHLMSQKYFTHATPTLFNSGTPRPQMSSCFLLSMKADSIEGIFETLKQCAL 238
Query: 241 ISKSAGGIGLSIHNIRASGSYIHGTNGSSNGIVPMLQVFNDTARYVDQGGGKRKGAFAIY 300
ISK+AGGIG+++ +IR SYI GTNG SNG+VPML+VFNDTARYVDQGGGKRKG+FA+Y
Sbjct: 239 ISKTAGGIGVAVQDIRGQNSYIRGTNGISNGLVPMLRVFNDTARYVDQGGGKRKGSFAVY 298
Query: 301 LEPWHADIFEFLDLRKNQGKEECRARDLFYALWVPDLFMERVRDDGKWSLFCPSDASGLA 360
+EPWH+DIFEFLDLRKN GKEE RARDLFYA+WVPDLFM+RV+++ W+L CP++ GL+
Sbjct: 299 IEPWHSDIFEFLDLRKNHGKEELRARDLFYAVWVPDLFMKRVKENKNWTLMCPNECPGLS 358
Query: 361 DSWGIEFEHLYSQYEEEGRAKMVISARKLWFEILNSQIETGTPYMLFKDSCNRKSNQQNL 420
++WG EFE LY++YEEE K + A+ LWF IL SQIETG PYML+KDSCN KSNQ+NL
Sbjct: 359 ETWGEEFEKLYTKYEEENMGKKTVLAQDLWFAILQSQIETGVPYMLYKDSCNAKSNQKNL 418
Query: 421 GTIKSSNLCTEIVEFSSPEETAVCNLASIALPRYVREKGVPVQSNVSKLVGSRDSKNRLF 480
GTIK SNLC EI+E++SP+E AVCNLASIAL ++V D + + F
Sbjct: 419 GTIKCSNLCCEIIEYTSPDEVAVCNLASIALCKFV------------------DLEKKEF 460
Query: 481 DFERLAEVTKIITENLNKIIDVNHYPIETTRRSNLRHRPIGIGIQGLADTFILLGLPFES 540
+F++L E+TKIIT NL+KII+ N+YP++ + SN RHRPIGIG+QGLADTF+LL P+ES
Sbjct: 461 NFKKLYEITKIITRNLDKIIERNYYPVKEAKTSNTRHRPIGIGVQGLADTFMLLRYPYES 520
Query: 541 PEAQQLNKDIFETIYYHALKASAELAVKDGPYETYFGSPMSKGILQVDMWNITPSDR-WD 599
A++LNK IFET+YY AL+ S ELA GPYE+Y GSP S+GILQ DMWN ++ WD
Sbjct: 521 DAAKELNKRIFETMYYAALEMSVELASIHGPYESYQGSPASQGILQFDMWNAKVDNKYWD 580
Query: 600 WSSLREMISKNGVRNSLLVAPMPTASTSQILGNNECFEPYTSNIYTRRVLSGEFIVVNKH 659
W L+ I K+G+RNSLL+APMPTASTSQILGNNE FEPYTSNIY RRVLSGEF VVN H
Sbjct: 581 WDELKAKIRKHGLRNSLLLAPMPTASTSQILGNNESFEPYTSNIYYRRVLSGEFFVVNPH 640
Query: 660 LLKDLTELGLWSHALKTKIIYENGSVSKISEIPEELKAIYKTVWEIKQKTLVDMAADRGC 719
LLKDL + GLW +K ++I NGS+ ISEIP++LK +YKTVWEIKQK ++DMAADRG
Sbjct: 641 LLKDLFDRGLWDEDMKQQLIAHNGSIQYISEIPDDLKELYKTVWEIKQKNIIDMAADRGI 700
Query: 720 YIDQSQSLNIHMEQPDHGKLTSLHFYAWSKGMKTGMYYLRTRAAADAIKFTVDTSVLNN- 778
+IDQSQSLNI++++P KL+S+HFY W KG+KTG YYLRT+AA DAIKFTVDT V N
Sbjct: 701 FIDQSQSLNIYIQKPTFAKLSSMHFYGWEKGLKTGAYYLRTQAATDAIKFTVDTHVAKNA 760
Query: 779 ------------EKANRADNDVEANLAQVVCSLK--NQEECMAC 808
+ +R E+ + Q VC L+ N E+C+ C
Sbjct: 761 VKLKNADGVQITREVSRETISTESTVTQNVCPLRRNNDEQCLMC 804
>sp|P32984|RIR1_VAR67 Ribonucleoside-diphosphate reductase large subunit OS=Variola virus
(isolate Human/India/Ind3/1967) GN=I4L PE=2 SV=1
Length = 771
Score = 1031 bits (2667), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 482/772 (62%), Positives = 600/772 (77%), Gaps = 21/772 (2%)
Query: 1 MYVIKRDGRKEPVRFDKITARLKKLSYGLSKEHCDPVLVAQKVCAGVYKGVTTTQLDELA 60
M+VIKR+G KE V FDKIT+R++KL YGL+ +H DP+ +A KV G+Y GVTT +LD L
Sbjct: 1 MFVIKRNGYKENVMFDKITSRIRKLCYGLNTDHIDPIKIAMKVIQGIYNGVTTVELDTLT 60
Query: 61 AETAAAMTVNHPDYALLAGRVAVSNLHKITKNSFSETIKDMYNYYNKRSGKKASLVADDV 120
AE AA T HPDYA+LA R+AVSNLHK TK FSE +KD++NY N ++GK + +++
Sbjct: 61 AEIAATCTTQHPDYAILAARIAVSNLHKETKKLFSEVMKDLFNYVNPKNGKHSPIISSIT 120
Query: 121 YEIIMKNAACLDGAIIYDRDFDFDYFGFKTLERSYLLKMDSRVVERPQHMLMRVSVGIHK 180
+++ K L+ IIY+RDF ++YFGFKTLE+SYLLK+++++VERPQHMLMRV+VGIH+
Sbjct: 121 MDVVNKYKDKLNSVIIYERDFSYNYFGFKTLEKSYLLKINNKIVERPQHMLMRVAVGIHQ 180
Query: 181 DDTDSALKTYHLMSQHWFTHATPTLFNAGTPQPQLSSCFLLCMKDDSIEGIYDTLKKCAI 240
D DSA++TY+L+S+ WFTHA+PTLFNAGT + Q+SSCFLL M DDSIEGIYDTLK+CA+
Sbjct: 181 WDIDSAIETYNLLSEKWFTHASPTLFNAGTSRHQMSSCFLLNMMDDSIEGIYDTLKRCAL 240
Query: 241 ISKSAGGIGLSIHNIRASGSYIHGTNGSSNGIVPMLQVFNDTARYVDQGGGKRKGAFAIY 300
ISK AGGIGLSI NIRASGSYI GTNG+SNGI+PML+V+N+TARY+DQGG KR G IY
Sbjct: 241 ISKMAGGIGLSISNIRASGSYISGTNGASNGIIPMLRVYNNTARYIDQGGNKRPGVMTIY 300
Query: 301 LEPWHADIFEFLDLRKNQGKEECRARDLFYALWVPDLFMERVRDDGKWSLFCPSDASGLA 360
LEPWH+DI FLDL+KN G EE R RDLF ALW+PDLFM+RV+DDG+WSL CP + GL
Sbjct: 301 LEPWHSDIMAFLDLKKNTGNEEHRTRDLFIALWIPDLFMKRVKDDGEWSLMCPDECPGLD 360
Query: 361 DSWGIEFEHLYSQYEEEGRAKMVISARKLWFEILNSQIETGTPYMLFKDSCNRKSNQQNL 420
+ WG EFE LY+ YE E R K +I AR +W I+ SQIETGTP++L+KD+CN+KSNQQNL
Sbjct: 361 NVWGDEFERLYTLYEREKRYKSIIKARVVWKAIIESQIETGTPFILYKDACNKKSNQQNL 420
Query: 421 GTIKSSNLCTEIVEFSSPEETAVCNLASIALPRYVREKGVPVQSNVSKLVGSRDSKNRLF 480
GTIK SNLCTEI++++ E AVCNLASIAL +V + F
Sbjct: 421 GTIKCSNLCTEIIQYADANEVAVCNLASIALNMFVIDGQ--------------------F 460
Query: 481 DFERLAEVTKIITENLNKIIDVNHYPIETTRRSNLRHRPIGIGIQGLADTFILLGLPFES 540
DF +L +V K+I NLNKIID+N+YPI SN RHRPIGIG+QGLAD FILL PF+S
Sbjct: 461 DFLKLKDVVKVIVRNLNKIIDINYYPIPEAEISNKRHRPIGIGVQGLADAFILLNYPFDS 520
Query: 541 PEAQQLNKDIFETIYYHALKASAELAVKDGPYETYFGSPMSKGILQVDMWNITPSDRWDW 600
EAQ LNK IFETIYY AL+AS ELA K+GPY+TY GS S GILQ D+WN+ PSD W+W
Sbjct: 521 LEAQDLNKKIFETIYYGALEASCELAEKEGPYDTYVGSYASNGILQYDLWNVVPSDLWNW 580
Query: 601 SSLREMISKNGVRNSLLVAPMPTASTSQILGNNECFEPYTSNIYTRRVLSGEFIVVNKHL 660
L++ I G+RNSLLVAPMPTAST+QILGNNE EPYTSNIYTRRVLSGEF VVN HL
Sbjct: 581 EPLKDKIRTYGLRNSLLVAPMPTASTAQILGNNESVEPYTSNIYTRRVLSGEFQVVNPHL 640
Query: 661 LKDLTELGLWSHALKTKIIYENGSVSKISEIPEELKAIYKTVWEIKQKTLVDMAADRGCY 720
L+ LTE LW+ +K +I+ + GS+ + +PE++K +YKT+WEI QKT++ MAADRG +
Sbjct: 641 LRVLTERKLWNDEIKNRIMVDGGSIQN-TNLPEDIKRVYKTIWEIPQKTIIKMAADRGAF 699
Query: 721 IDQSQSLNIHMEQPDHGKLTSLHFYAWSKGMKTGMYYLRTRAAADAIKFTVD 772
IDQSQS+NIH+ P + KLTS+HFY WS G+KTGMYYLRT+ A+ I+FT+D
Sbjct: 700 IDQSQSMNIHIADPSYSKLTSMHFYGWSLGLKTGMYYLRTKPASAPIQFTLD 751
>sp|P20503|RIR1_VACCC Ribonucleoside-diphosphate reductase large subunit OS=Vaccinia
virus (strain Copenhagen) GN=I4L PE=2 SV=1
Length = 771
Score = 1031 bits (2667), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 484/772 (62%), Positives = 602/772 (77%), Gaps = 21/772 (2%)
Query: 1 MYVIKRDGRKEPVRFDKITARLKKLSYGLSKEHCDPVLVAQKVCAGVYKGVTTTQLDELA 60
M+VIKR+G KE V FDKIT+R++KL YGL+ +H DP+ +A KV G+Y GVTT +LD LA
Sbjct: 1 MFVIKRNGYKENVMFDKITSRIRKLCYGLNTDHIDPIKIAMKVIQGIYNGVTTVELDTLA 60
Query: 61 AETAAAMTVNHPDYALLAGRVAVSNLHKITKNSFSETIKDMYNYYNKRSGKKASLVADDV 120
AE AA T HPDYA+LA R+AVSNLHK TK FSE ++D++NY N ++GK + +++
Sbjct: 61 AEIAATCTTQHPDYAILAARIAVSNLHKETKKLFSEVMEDLFNYVNPKNGKHSPIISSIT 120
Query: 121 YEIIMKNAACLDGAIIYDRDFDFDYFGFKTLERSYLLKMDSRVVERPQHMLMRVSVGIHK 180
+I+ K L+ IIY+RDF ++YFGFKTLE+SYLLK+++++VERPQHMLMRV+VGIH+
Sbjct: 121 MDIVNKYKDKLNSVIIYERDFSYNYFGFKTLEKSYLLKINNKIVERPQHMLMRVAVGIHQ 180
Query: 181 DDTDSALKTYHLMSQHWFTHATPTLFNAGTPQPQLSSCFLLCMKDDSIEGIYDTLKKCAI 240
D DSA++TY+L+S+ WFTHA+PTLFNAGT + Q+SSCFLL M DDSIEGIYDTLK+CA+
Sbjct: 181 WDIDSAIETYNLLSEKWFTHASPTLFNAGTSRHQMSSCFLLNMIDDSIEGIYDTLKRCAL 240
Query: 241 ISKSAGGIGLSIHNIRASGSYIHGTNGSSNGIVPMLQVFNDTARYVDQGGGKRKGAFAIY 300
ISK AGGIGLSI NIRASGSYI GTNG SNGI+PML+V+N+TARY+DQGG KR G AIY
Sbjct: 241 ISKMAGGIGLSISNIRASGSYISGTNGISNGIIPMLRVYNNTARYIDQGGNKRPGVMAIY 300
Query: 301 LEPWHADIFEFLDLRKNQGKEECRARDLFYALWVPDLFMERVRDDGKWSLFCPSDASGLA 360
LEPWH+DI FLDL+KN G EE R RDLF ALW+PDLFM+RV+DDG+WSL CP + GL
Sbjct: 301 LEPWHSDIMAFLDLKKNTGNEEHRTRDLFIALWIPDLFMKRVKDDGEWSLMCPDECPGLD 360
Query: 361 DSWGIEFEHLYSQYEEEGRAKMVISARKLWFEILNSQIETGTPYMLFKDSCNRKSNQQNL 420
+ WG EFE LY+ YE E R K +I AR +W I+ SQIETGTP++L+KD+CN+KSNQQNL
Sbjct: 361 NVWGDEFERLYTLYERERRYKSIIKARVVWKAIIESQIETGTPFILYKDACNKKSNQQNL 420
Query: 421 GTIKSSNLCTEIVEFSSPEETAVCNLASIALPRYVREKGVPVQSNVSKLVGSRDSKNRLF 480
GTIK SNLCTEI++++ E AVCNLAS+AL +V + R F
Sbjct: 421 GTIKCSNLCTEIIQYADANEVAVCNLASVALNMFV--------------IDGR------F 460
Query: 481 DFERLAEVTKIITENLNKIIDVNHYPIETTRRSNLRHRPIGIGIQGLADTFILLGLPFES 540
DF +L +V K+I NLNKIID+N+YPI SN RHRPIGIG+QGLAD FILL PF+S
Sbjct: 461 DFLKLKDVVKVIVRNLNKIIDINYYPIPEAEISNKRHRPIGIGVQGLADAFILLNYPFDS 520
Query: 541 PEAQQLNKDIFETIYYHALKASAELAVKDGPYETYFGSPMSKGILQVDMWNITPSDRWDW 600
EAQ LNK IFETIYY AL+AS ELA K+GPY+TY GS S GILQ D+WN+ PSD W+W
Sbjct: 521 LEAQDLNKKIFETIYYGALEASCELAEKEGPYDTYVGSYASNGILQYDLWNVVPSDLWNW 580
Query: 601 SSLREMISKNGVRNSLLVAPMPTASTSQILGNNECFEPYTSNIYTRRVLSGEFIVVNKHL 660
L++ I G+RNSLLVAPMPTAST+QILGNNE EPYTSNIYTRRVLSGEF VVN HL
Sbjct: 581 EPLKDKIRTYGLRNSLLVAPMPTASTAQILGNNESVEPYTSNIYTRRVLSGEFQVVNPHL 640
Query: 661 LKDLTELGLWSHALKTKIIYENGSVSKISEIPEELKAIYKTVWEIKQKTLVDMAADRGCY 720
L+ LTE LW+ +K +I+ + GS+ + +PE++K +YKT+WEI QKT++ MAADRG +
Sbjct: 641 LRVLTERKLWNDEIKNRIMADGGSIQN-TNLPEDIKRVYKTIWEIPQKTIIKMAADRGAF 699
Query: 721 IDQSQSLNIHMEQPDHGKLTSLHFYAWSKGMKTGMYYLRTRAAADAIKFTVD 772
IDQSQS+NIH+ P + KLTS+HFY WS G+KTGMYYLRT+ A+ I+FT+D
Sbjct: 700 IDQSQSMNIHIADPSYSKLTSMHFYGWSLGLKTGMYYLRTKPASAPIQFTLD 751
>sp|Q76RD8|RIR1_VACCA Ribonucleoside-diphosphate reductase large subunit OS=Vaccinia
virus (strain Ankara) GN=MVA065L PE=2 SV=1
Length = 771
Score = 1031 bits (2667), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 484/772 (62%), Positives = 602/772 (77%), Gaps = 21/772 (2%)
Query: 1 MYVIKRDGRKEPVRFDKITARLKKLSYGLSKEHCDPVLVAQKVCAGVYKGVTTTQLDELA 60
M+VIKR+G KE V FDKIT+R++KL YGL+ +H DP+ +A KV G+Y GVTT +LD LA
Sbjct: 1 MFVIKRNGYKENVMFDKITSRIRKLCYGLNTDHIDPIKIAMKVIQGIYNGVTTVELDTLA 60
Query: 61 AETAAAMTVNHPDYALLAGRVAVSNLHKITKNSFSETIKDMYNYYNKRSGKKASLVADDV 120
AE AA T HPDYA+LA R+AVSNLHK TK FSE ++D++NY N ++GK + +++
Sbjct: 61 AEIAATCTTQHPDYAILAARIAVSNLHKETKKLFSEVMEDLFNYVNPKNGKHSPIISSIT 120
Query: 121 YEIIMKNAACLDGAIIYDRDFDFDYFGFKTLERSYLLKMDSRVVERPQHMLMRVSVGIHK 180
+I+ K L+ IIY+RDF ++YFGFKTLE+SYLLK+++++VERPQHMLMRV+VGIH+
Sbjct: 121 MDIVNKYKDKLNSVIIYERDFSYNYFGFKTLEKSYLLKINNKIVERPQHMLMRVAVGIHQ 180
Query: 181 DDTDSALKTYHLMSQHWFTHATPTLFNAGTPQPQLSSCFLLCMKDDSIEGIYDTLKKCAI 240
D DSA++TY+L+S+ WFTHA+PTLFNAGT + Q+SSCFLL M DDSIEGIYDTLK+CA+
Sbjct: 181 WDIDSAIETYNLLSEKWFTHASPTLFNAGTSRHQMSSCFLLNMIDDSIEGIYDTLKRCAL 240
Query: 241 ISKSAGGIGLSIHNIRASGSYIHGTNGSSNGIVPMLQVFNDTARYVDQGGGKRKGAFAIY 300
ISK AGGIGLSI NIRASGSYI GTNG SNGI+PML+V+N+TARY+DQGG KR G AIY
Sbjct: 241 ISKMAGGIGLSISNIRASGSYISGTNGISNGIIPMLRVYNNTARYIDQGGNKRPGVMAIY 300
Query: 301 LEPWHADIFEFLDLRKNQGKEECRARDLFYALWVPDLFMERVRDDGKWSLFCPSDASGLA 360
LEPWH+DI FLDL+KN G EE R RDLF ALW+PDLFM+RV+DDG+WSL CP + GL
Sbjct: 301 LEPWHSDIMAFLDLKKNTGNEEHRTRDLFIALWIPDLFMKRVKDDGEWSLMCPDECPGLD 360
Query: 361 DSWGIEFEHLYSQYEEEGRAKMVISARKLWFEILNSQIETGTPYMLFKDSCNRKSNQQNL 420
+ WG EFE LY+ YE E R K +I AR +W I+ SQIETGTP++L+KD+CN+KSNQQNL
Sbjct: 361 NVWGDEFERLYTLYERERRYKSIIKARVVWKAIIESQIETGTPFILYKDACNKKSNQQNL 420
Query: 421 GTIKSSNLCTEIVEFSSPEETAVCNLASIALPRYVREKGVPVQSNVSKLVGSRDSKNRLF 480
GTIK SNLCTEI++++ E AVCNLAS+AL +V + R F
Sbjct: 421 GTIKCSNLCTEIIQYADANEVAVCNLASVALNMFV--------------IDGR------F 460
Query: 481 DFERLAEVTKIITENLNKIIDVNHYPIETTRRSNLRHRPIGIGIQGLADTFILLGLPFES 540
DF +L +V K+I NLNKIID+N+YPI SN RHRPIGIG+QGLAD FILL PF+S
Sbjct: 461 DFLKLKDVVKVIVRNLNKIIDINYYPIPEAEISNKRHRPIGIGVQGLADAFILLNYPFDS 520
Query: 541 PEAQQLNKDIFETIYYHALKASAELAVKDGPYETYFGSPMSKGILQVDMWNITPSDRWDW 600
EAQ LNK IFETIYY AL+AS ELA K+GPY+TY GS S GILQ D+WN+ PSD W+W
Sbjct: 521 LEAQDLNKKIFETIYYGALEASCELAEKEGPYDTYVGSYASNGILQYDLWNVVPSDLWNW 580
Query: 601 SSLREMISKNGVRNSLLVAPMPTASTSQILGNNECFEPYTSNIYTRRVLSGEFIVVNKHL 660
L++ I G+RNSLLVAPMPTAST+QILGNNE EPYTSNIYTRRVLSGEF VVN HL
Sbjct: 581 EPLKDKIRTYGLRNSLLVAPMPTASTAQILGNNESVEPYTSNIYTRRVLSGEFQVVNPHL 640
Query: 661 LKDLTELGLWSHALKTKIIYENGSVSKISEIPEELKAIYKTVWEIKQKTLVDMAADRGCY 720
L+ LTE LW+ +K +I+ + GS+ + +PE++K +YKT+WEI QKT++ MAADRG +
Sbjct: 641 LRVLTERKLWNDEIKNRIMADGGSIQN-TNLPEDIKRVYKTIWEIPQKTIIKMAADRGAF 699
Query: 721 IDQSQSLNIHMEQPDHGKLTSLHFYAWSKGMKTGMYYLRTRAAADAIKFTVD 772
IDQSQS+NIH+ P + KLTS+HFY WS G+KTGMYYLRT+ A+ I+FT+D
Sbjct: 700 IDQSQSMNIHIADPSYSKLTSMHFYGWSLGLKTGMYYLRTKPASAPIQFTLD 751
>sp|P12848|RIR1_VACCW Ribonucleoside-diphosphate reductase large subunit OS=Vaccinia
virus (strain Western Reserve) GN=VACWR073 PE=1 SV=1
Length = 771
Score = 1031 bits (2665), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 484/772 (62%), Positives = 602/772 (77%), Gaps = 21/772 (2%)
Query: 1 MYVIKRDGRKEPVRFDKITARLKKLSYGLSKEHCDPVLVAQKVCAGVYKGVTTTQLDELA 60
M+VIKR+G KE V FDKIT+R++KL YGL+ +H DP+ +A KV G+Y GVTT +LD LA
Sbjct: 1 MFVIKRNGYKENVMFDKITSRIRKLCYGLNTDHIDPIKIAMKVIQGIYNGVTTVELDTLA 60
Query: 61 AETAAAMTVNHPDYALLAGRVAVSNLHKITKNSFSETIKDMYNYYNKRSGKKASLVADDV 120
AE AA T HPDYA+LA R+AVSNLHK TK FSE ++D++NY N ++GK + +++
Sbjct: 61 AEIAATCTTQHPDYAILAARIAVSNLHKETKKLFSEVMEDLFNYVNPKNGKHSPIISSIT 120
Query: 121 YEIIMKNAACLDGAIIYDRDFDFDYFGFKTLERSYLLKMDSRVVERPQHMLMRVSVGIHK 180
+I+ K L+ IIY+RDF ++YFGFKTLE+SYLLK+++++VERPQHMLMRV+VGIH+
Sbjct: 121 MDIVNKYKDKLNSVIIYERDFSYNYFGFKTLEKSYLLKINNKIVERPQHMLMRVAVGIHQ 180
Query: 181 DDTDSALKTYHLMSQHWFTHATPTLFNAGTPQPQLSSCFLLCMKDDSIEGIYDTLKKCAI 240
D DSA++TY+L+S+ WFTHA+PTLFNAGT + Q+SSCFLL M DDSIEGIYDTLK+CA+
Sbjct: 181 WDIDSAIETYNLLSEKWFTHASPTLFNAGTSRHQMSSCFLLNMIDDSIEGIYDTLKRCAL 240
Query: 241 ISKSAGGIGLSIHNIRASGSYIHGTNGSSNGIVPMLQVFNDTARYVDQGGGKRKGAFAIY 300
ISK AGGIGLSI NIRASGSYI GTNG SNGI+PML+V+N+TARY+DQGG KR G AIY
Sbjct: 241 ISKMAGGIGLSISNIRASGSYISGTNGISNGIIPMLRVYNNTARYIDQGGNKRPGVMAIY 300
Query: 301 LEPWHADIFEFLDLRKNQGKEECRARDLFYALWVPDLFMERVRDDGKWSLFCPSDASGLA 360
LEPWH+DI FLDL+KN G EE R RDLF ALW+PDLFM+RV+DDG+WSL CP + GL
Sbjct: 301 LEPWHSDIMAFLDLKKNTGNEEHRTRDLFIALWIPDLFMKRVKDDGEWSLMCPDECPGLD 360
Query: 361 DSWGIEFEHLYSQYEEEGRAKMVISARKLWFEILNSQIETGTPYMLFKDSCNRKSNQQNL 420
+ WG EFE LY+ YE E R K +I AR +W I+ SQIETGTP++L+KD+CN+KSNQQNL
Sbjct: 361 NVWGDEFERLYTLYERERRYKSIIKARVVWKAIIESQIETGTPFILYKDACNKKSNQQNL 420
Query: 421 GTIKSSNLCTEIVEFSSPEETAVCNLASIALPRYVREKGVPVQSNVSKLVGSRDSKNRLF 480
GTIK SNLCTEI++++ E AVCNLAS+AL +V + R F
Sbjct: 421 GTIKCSNLCTEIIQYADANEVAVCNLASVALNMFV--------------IDGR------F 460
Query: 481 DFERLAEVTKIITENLNKIIDVNHYPIETTRRSNLRHRPIGIGIQGLADTFILLGLPFES 540
DF +L +V K+I NLNKIID+N+YPI SN RHRPIGIG+QGLAD FILL PF+S
Sbjct: 461 DFLKLKDVVKVIVRNLNKIIDINYYPIPEAEISNKRHRPIGIGVQGLADAFILLNYPFDS 520
Query: 541 PEAQQLNKDIFETIYYHALKASAELAVKDGPYETYFGSPMSKGILQVDMWNITPSDRWDW 600
EAQ LNK IFETIYY AL+AS ELA K+GPY+TY GS S GILQ D+WN+ PSD W+W
Sbjct: 521 LEAQDLNKKIFETIYYGALEASCELAEKEGPYDTYVGSYASNGILQYDLWNVVPSDLWNW 580
Query: 601 SSLREMISKNGVRNSLLVAPMPTASTSQILGNNECFEPYTSNIYTRRVLSGEFIVVNKHL 660
L++ I G+RNSLLVAPMPTAST+QILGNNE EPYTSNIYTRRVLSGEF VVN HL
Sbjct: 581 EPLKDKIRTYGLRNSLLVAPMPTASTAQILGNNESVEPYTSNIYTRRVLSGEFQVVNPHL 640
Query: 661 LKDLTELGLWSHALKTKIIYENGSVSKISEIPEELKAIYKTVWEIKQKTLVDMAADRGCY 720
L+ LTE LW+ +K +I+ + GS+ + +PE++K +YKT+WEI QKT++ MAADRG +
Sbjct: 641 LRVLTERKLWNDEIKNRIMADGGSIQN-TNLPEDIKRVYKTIWEIPQKTIIKMAADRGAF 699
Query: 721 IDQSQSLNIHMEQPDHGKLTSLHFYAWSKGMKTGMYYLRTRAAADAIKFTVD 772
IDQSQS+NIH+ P + KLTS+HFY WS G+KTGMYYLRT+ A+ I+FT+D
Sbjct: 700 IDQSQSMNIHIADPSYSKLTSMHFYGWSLGLKTGMYYLRTKPASAPIQFTLD 751
>sp|P50647|RIR1_PLAFG Ribonucleoside-diphosphate reductase large subunit OS=Plasmodium
falciparum (isolate FCR-3 / Gambia) GN=RNR1 PE=3 SV=1
Length = 804
Score = 999 bits (2582), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 480/823 (58%), Positives = 617/823 (74%), Gaps = 36/823 (4%)
Query: 1 MYVIKRDGRKEPVRFDKITARLKKLSYGLSKEHCDPVLVAQKVCAGVYKGVTTTQLDELA 60
MYV+ R G +E + FD+I R+++LSYGL K P V Q V G+Y + T +LDELA
Sbjct: 1 MYVLNRKGEEEDISFDQILKRIQRLSYGLHKLGEYPACVTQGVINGMYSSIKTCELDELA 60
Query: 61 AETAAAMTVNHPDYALLAGRVAVSNLHKITKNSFSETIKDMYNYYNKRSGKKASLVADDV 120
A+T A M HPD+++LA R+ NLHK T + +E + +Y Y + R G+ ASL++ +V
Sbjct: 61 AQTCAYMATTHPDFSILAARITTDNLHKNTSDDVAEVAEALYTYKDGR-GRPASLISKEV 119
Query: 121 YEIIMKNAACLDGAIIYDRDFDFDYFGFKTLERSYLLKMDSRVVERPQHMLMRVSVGIHK 180
Y+ I+ + L+ I Y F++DYFGFKTLERSYLL+++++++ERPQH+LMRVS+GIH
Sbjct: 120 YDFILLHKVRLNKEIDYTTHFNYDYFGFKTLERSYLLRINNKIIERPQHLLMRVSIGIHI 179
Query: 181 DDTDSALKTYHLMSQHWFTHATPTLFNAGTPQPQLSSCFLLCMKDDSIEGIYDTLKKCAI 240
DD D AL+TYHLMSQ +FTHATPTLFN+GTP+PQ+SSCFLL MK DSIEGI++TLK+CA+
Sbjct: 180 DDIDKALETYHLMSQKYFTHATPTLFNSGTPRPQMSSCFLLSMKADSIEGIFETLKQCAL 239
Query: 241 ISKSAGGIGLSIHNIRASGSYIHGTNGSSNGIVPMLQVFNDTARYVDQGGGKRKGAFAIY 300
ISK+AGGIG+++ +IR SYI GTNG SNG+VPML+VFNDTARYVDQGGGKRKG++A+Y
Sbjct: 240 ISKTAGGIGVAVQDIRGQNSYIRGTNGISNGLVPMLRVFNDTARYVDQGGGKRKGSYAVY 299
Query: 301 LEPWHADIFEFLDLRKNQGKEECRARDLFYALWVPDLFMERVRDDGKWSLFCPSDASGLA 360
+EPWH+DIFEFLDLRKN GKEE RARDLFYA+WVPDLFM+RV+++ W+L CP++ GL+
Sbjct: 300 IEPWHSDIFEFLDLRKNHGKEELRARDLFYAVWVPDLFMKRVKENKNWTLMCPNECPGLS 359
Query: 361 DSWGIEFEHLYSQYEEEGRAKMVISARKLWFEILNSQIETGTPYMLFKDSCNRKSNQQNL 420
++WG EFE LY++YEEE K + A+ LWF IL SQIETG P L+KDSCN K +NL
Sbjct: 360 ETWGEEFEKLYTKYEEENMGKKTVLAQDLWFAILQSQIETGVPIYLYKDSCNAKP-IKNL 418
Query: 421 GTIKSSNLCTEIVEFSSPEETAVCNLASIALPRYVREKGVPVQSNVSKLVGSRDSKNRLF 480
GTIK SNLC EI+E++SP+E AVCNLASIAL ++V D + + F
Sbjct: 419 GTIKCSNLCCEIIEYTSPDEVAVCNLASIALCKFV------------------DLEKKEF 460
Query: 481 DFERLAEVTKIITENLNKIIDVNHYPIETTRRSNLRHRPIGIGIQGLADTFILLGLPFES 540
+F++L E+TKIIT NL+KII+ N+YP++ + SN RHRPIGIG+QGLADTF+LL +ES
Sbjct: 461 NFKKLYEITKIITRNLDKIIERNYYPVKEAKTSNTRHRPIGIGVQGLADTFMLLRYLYES 520
Query: 541 PEAQQLNKDIFETIYYHALKASAELAVKDGPYETYFGSPMSKGILQVDMWNITPSDR-WD 599
A++LNK I+ET+YY AL+ S + ++ GPYE+Y GSP S+GILQ DMWN ++ WD
Sbjct: 521 DAAKELNKRIYETMYYAALEMSVDW-LQSGPYESYQGSPGSQGILQFDMWNAKVDNKYWD 579
Query: 600 WSSLREMISKNGVRNSLLVAPMPTASTSQILGNNECFEPYTSNIYTRRVLSGEFIVVNKH 659
W L+ I+K G+RN LL+APMPTASTSQILGNNE FEPYTSNIY RRVLSGEF VVN H
Sbjct: 580 WDELKLKIAKTGLRNLLLLAPMPTASTSQILGNNESFEPYTSNIYYRRVLSGEFFVVNPH 639
Query: 660 LLKDLTELGLWSHALKTKIIYENGSVSKISEIPEELKAIYKTVWEIKQKTLVDMAADRGC 719
LLKDL + GLW +K ++I NGS+ ISEIP++LK +YKTVWEIKQK ++DMAADRG
Sbjct: 640 LLKDLFDRGLWDEDMKQQLIAHNGSIQYISEIPDDLKELYKTVWEIKQKNIIDMAADRGY 699
Query: 720 YIDQSQSLNIHMEQPDHGKLTSLHFYAWSKGMKTGMYYLRTRAAADAIKFTVDTSVLNNE 779
+IDQSQSLNI++++P KL+S+HFY W KG+KTG YYLRT+AA DAIKFTVDT V N
Sbjct: 700 FIDQSQSLNIYIQKPTFAKLSSMHFYGWEKGLKTGAYYLRTQAATDAIKFTVDTHVAKNA 759
Query: 780 -KANRADN----------DVEANLAQVVC-SLK--NQEECMAC 808
K AD ++ N C S K N E+C+ C
Sbjct: 760 VKLKNADGVQITREVSRETIQLNQRYSKCVSFKSNNDEQCLMC 802
>sp|O61065|RIR1_CRYPV Ribonucleoside-diphosphate reductase large chain OS=Cryptosporidium
parvum GN=RNR1 PE=3 SV=2
Length = 803
Score = 994 bits (2569), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 482/823 (58%), Positives = 613/823 (74%), Gaps = 37/823 (4%)
Query: 1 MYVIKRDGRKEPVRFDKITARLKKLSYGLSKEHCDPVLVAQKVCAGVYKGVTTTQLDELA 60
MYV+ R G +EPV FD+I +R+ KLSYGL DP V Q V G+Y G+ T++LDELA
Sbjct: 1 MYVVNRKGEEEPVSFDQILSRITKLSYGLHP-LVDPARVTQAVINGLYSGIKTSELDELA 59
Query: 61 AETAAAMTVNHPDYALLAGRVAVSNLHKITKNSFSETIKDMYNYYNKRSGKKASLVADDV 120
++T A M H D++ LA R++ SNLHK T + + +YN+ + + G A L++ V
Sbjct: 60 SQTCAYMAATHNDFSKLAARISTSNLHKNTSSDIGDVASQLYNFKDNQ-GCPAPLISKPV 118
Query: 121 YEIIMKNAACLDGAIIYDRDFDFDYFGFKTLERSYLLKMDSRVVERPQHMLMRVSVGIHK 180
Y+ IM+N ++ I + +DF++DYF FKTLERSYLLK+D++VVERPQH+LMRVS GIH
Sbjct: 119 YDFIMENRERINSKIDFSKDFEYDYFAFKTLERSYLLKIDNKVVERPQHLLMRVSCGIHC 178
Query: 181 DDTDSALKTYHLMSQHWFTHATPTLFNAGTPQPQLSSCFLLCMKDDSIEGIYDTLKKCAI 240
D ++AL+TY L+SQ +FTHATPTLFN+GTP+PQ+SSCFLL + +DSI GI+DTL KCA
Sbjct: 179 GDIEAALETYELLSQKYFTHATPTLFNSGTPRPQMSSCFLLRIPEDSINGIFDTLTKCAN 238
Query: 241 ISKSAGGIGLSIHNIRASGSYIHGTNGSSNGIVPMLQVFNDTARYVDQGGGKRKGAFAIY 300
ISK+AGG+G+++ NIR +GSYI GTNG SNG++PML+V+NDTARY+DQGGGKRKGA AIY
Sbjct: 239 ISKTAGGLGVAVSNIRGTGSYIRGTNGRSNGLIPMLRVYNDTARYIDQGGGKRKGAIAIY 298
Query: 301 LEPWHADIFEFLDLRKNQGKEECRARDLFYALWVPDLFMERVRDDGKWSLFCPSDASGLA 360
LEPWH D+ EF+++RKN GKEE R RDLF ALWVPDLFMERV D W+L CP + GL
Sbjct: 299 LEPWHVDVVEFIEIRKNHGKEEMRCRDLFPALWVPDLFMERVEKDQDWTLMCPDECRGLQ 358
Query: 361 DSWGIEFEHLYSQYEEEGRAKMVISARKLWFEILNSQIETGTPYMLFKDSCNRKSNQQNL 420
D WG +F+ LY +YE++GR + + A+KLWF IL +QIETGTP++ +KD+ N KSNQ+NL
Sbjct: 359 DVWGDDFKKLYEEYEKQGRGRKTMKAQKLWFLILQAQIETGTPFICYKDAANSKSNQKNL 418
Query: 421 GTIKSSNLCTEIVEFSSPEETAVCNLASIALPRYVREKGVPVQSNVSKLVGSRDSKNRLF 480
GTI SSNLCTEI+E++S +E AVCNLASI LP++V D N+ F
Sbjct: 419 GTIVSSNLCTEIIEYTSTDEVAVCNLASIGLPKFV------------------DKNNKTF 460
Query: 481 DFERLAEVTKIITENLNKIIDVNHYPIETTRRSNLRHRPIGIGIQGLADTFILLGLPFES 540
DF++L EVTK+IT NLNK+IDV +Y ++ ++SNLRHRP+GIGIQGLAD F++L +P+ES
Sbjct: 461 DFDKLKEVTKVITRNLNKLIDVGYYSLKECKKSNLRHRPLGIGIQGLADCFMMLRMPYES 520
Query: 541 PEAQQLNKDIFETIYYHALKASAELAVKDGPYETYFGSPMSKGILQVDMWNITP-SDRWD 599
A++LNK IFE IYY AL AS ELA K GPYETY GSP SKGILQ DMW +TP S D
Sbjct: 521 EGAKKLNKQIFEVIYYAALDASCELAEKYGPYETYSGSPASKGILQFDMWGVTPDSGLCD 580
Query: 600 WSSLREMISKNGVRNSLLVAPMPTASTSQILGNNECFEPYTSNIYTRRVLSGEFIVVNKH 659
W L++ ISK+G+RNSLL++PMPTASTSQILGNNE FEP+TSNIY RRVLSGEF VVN H
Sbjct: 581 WDLLKDRISKHGIRNSLLISPMPTASTSQILGNNESFEPFTSNIYHRRVLSGEFFVVNPH 640
Query: 660 LLKDLTELGLWSHALKTKIIYENGSVSKISEIPEELKAIYKTVWEIKQKTLVDMAADRGC 719
LL DL ELGLW LK II NGS+ I IPE+++ +YKTVWEIKQKT++DMAADRG
Sbjct: 641 LLNDLLELGLWDDRLKQNIIANNGSIQNILTIPEDIRELYKTVWEIKQKTVIDMAADRGP 700
Query: 720 YIDQSQSLNIHMEQPDHGKLTSLHFYAWSKGMKTGMYYLRTRAAADAIKFTVDTSVLNNE 779
Y+ QSQSLNIHME + KL+S+HFY W KG+KTG+YYLRT++A I+FTVD +L +E
Sbjct: 701 YVCQSQSLNIHMENANFAKLSSMHFYGWKKGLKTGIYYLRTQSATRPIQFTVDQQLLKSE 760
Query: 780 KANRADNDVEANLAQ---------VVCSL-----KNQEECMAC 808
+ + +E N Q + C L K+ EECM C
Sbjct: 761 --TKEKDSLETNKRQALEPEAQKLIACPLRPTNMKDDEECMMC 801
>sp|O15909|RIR1_TRYBB Ribonucleoside-diphosphate reductase large subunit OS=Trypanosoma
brucei brucei GN=RNR1 PE=2 SV=1
Length = 838
Score = 962 bits (2487), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 468/792 (59%), Positives = 588/792 (74%), Gaps = 38/792 (4%)
Query: 3 VIKRDGRKEPVRFDKITARLKKLSYGLSKEHCDPVLVAQKVCAGVYKGVTTTQLDELAAE 62
V KRDG EP + +R+ L G+ + D + + V GV +G++T+ LDEL AE
Sbjct: 8 VTKRDGSVEPYDEKVVRSRIVNLMSGIDSYYVDVDDLVRVVGEGVREGMSTSMLDELLAE 67
Query: 63 TAAAMTVNHPDYALLAGRVAVSNLHKITKNSFSETIKDMYNYYNKRSGKKASLVADDVYE 122
TAA HPDY LLAGR+AV+ LHK T S ++ + ++ + ++ + + A L+++++++
Sbjct: 68 TAAYCVTKHPDYGLLAGRLAVTALHKTTTESVLDSFRVLHEHVSQATKRHAPLISEELWD 127
Query: 123 IIMKNAACLDGAIIYDRDFDFDYFGFKTLERSYLLKMDS-----RVVERPQHMLMRVSVG 177
I K++A L I Y+RDFDF+YFG+KTLERSYLL++ VVERPQ M +RV++G
Sbjct: 128 IANKHSAALQQIINYERDFDFEYFGYKTLERSYLLRVHKGRGVMEVVERPQQMFLRVALG 187
Query: 178 IHKDDTDSALKTYHLMSQHWFTHATPTLFNAGTPQPQLSSCFLLCMKDDSIEGIYDTLKK 237
IH +D + +TY MSQ +FTHATPTLFNAGTP PQ+SSCFL+ M++DSI+GIYDTLK+
Sbjct: 188 IHGEDLERVKETYDYMSQGFFTHATPTLFNAGTPFPQMSSCFLVAMREDSIDGIYDTLKQ 247
Query: 238 CAIISKSAGGIGLSIHNIRASGSYIHGTNGSSNGIVPMLQVFNDTARYVDQGGGKRKGAF 297
CAIISKSAGGIG+ +HNIRA+GSYI GTNG+SNG+VPML+V+N+TARYVDQGGGKRKGAF
Sbjct: 248 CAIISKSAGGIGIHMHNIRAAGSYIAGTNGTSNGLVPMLRVWNNTARYVDQGGGKRKGAF 307
Query: 298 AIYLEPWHADIFEFLDLRKNQGKEECRARDLFYALWVPDLFMERVRDDGKWSLFCPSDAS 357
AIYLEPWHADIF FL L+KN GKE+ RARDLFY LW+PDLFMERV G W+L P+ A
Sbjct: 308 AIYLEPWHADIFGFLLLKKNTGKEDQRARDLFYGLWIPDLFMERVESHGTWTLMDPNTAP 367
Query: 358 GLADSWGIEFEHLYSQYEEEGRAKMVISARKLWFEILNSQIETGTPYMLFKDSCNRKSNQ 417
L+D +G EF LY +YE EGR I A++LWF IL SQ+ETG P+ML+KD+CN KSNQ
Sbjct: 368 FLSDCYGQEFTDLYERYEREGRGVRTIQAQELWFLILESQVETGVPFMLYKDACNFKSNQ 427
Query: 418 QNLGTIKSSNLCTEIVEFSSPEETAVCNLASIALPRYVREKGVPVQSNVSKLVGSRDSKN 477
+NLGTIK SNLCTEIVE++S +E AVCNLASIALPR+V K+
Sbjct: 428 KNLGTIKCSNLCTEIVEYTSRDEVAVCNLASIALPRFV--------------------KD 467
Query: 478 RLFDFERLAEVTKIITENLNKIIDVNHYPIETTRRSNLRHRPIGIGIQGLADTFILLGLP 537
FD+ L EVTK++T NLN++ID NHYP+ R SNLRHRP+GIG+QGLAD F LL LP
Sbjct: 468 GAFDYVALKEVTKVVTRNLNRVIDRNHYPVCEARYSNLRHRPVGIGVQGLADAFALLSLP 527
Query: 538 FESPEAQQLNKDIFETIYYHALKASAELAVKDGPYETYFGSPMSKGILQVDMWNITPSDR 597
F PEA++LN+ IFETIY A++AS ELA KDGPYET+ GSP S+G LQ D+W+ R
Sbjct: 528 FAHPEAKKLNRQIFETIYIAAVEASTELAEKDGPYETFKGSPASEGKLQFDLWDEERRIR 587
Query: 598 -------------WDWSSLREMISKNGVRNSLLVAPMPTASTSQILGNNECFEPYTSNIY 644
WDW SL+E + K G+RNSLL+APMPTASTSQILGNNEC EP+TSNIY
Sbjct: 588 GMNEDSVHSHCGLWDWDSLKERVVKVGMRNSLLIAPMPTASTSQILGNNECIEPFTSNIY 647
Query: 645 TRRVLSGEFIVVNKHLLKDLTELGLWSHALKTKIIYENGSVSKISEIPEELKAIYKTVWE 704
RRVLSGEF VVNKHL+K+L L LW+ ++ KII NGSVS I EIPE ++ +YK VWE
Sbjct: 648 VRRVLSGEFPVVNKHLVKELIRLRLWNDDMRRKIIALNGSVSGIKEIPERIRELYKVVWE 707
Query: 705 IKQKTLVDMAADRGCYIDQSQSLNIHMEQPDHGKLTSLHFYAWSKGMKTGMYYLRTRAAA 764
I+QK L+DMAADRG YIDQSQSLN+ + P +LTS+HFY+W KG+KTGMYYLR++ AA
Sbjct: 708 IRQKDLIDMAADRGRYIDQSQSLNLFLATPTSSQLTSMHFYSWKKGLKTGMYYLRSQPAA 767
Query: 765 DAIKFTVDTSVL 776
DAIKFT+D +
Sbjct: 768 DAIKFTLDPKAM 779
>sp|Q8SR37|RIR1_ENCCU Ribonucleoside-diphosphate reductase large chain OS=Encephalitozoon
cuniculi (strain GB-M1) GN=ECU10_0920 PE=3 SV=1
Length = 768
Score = 838 bits (2165), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 399/779 (51%), Positives = 544/779 (69%), Gaps = 29/779 (3%)
Query: 9 RKEPVRFDKITARLKKLSYGLSKEHCDPVLVAQKVCAGVYKGVTTTQLDELAAETAAAMT 68
+ E + D I +R++ L H D + +++ +G + +T + + +ETAA+M
Sbjct: 11 KSEKLGIDLIRSRIEGYVKDLKLRHVDVDELVERIVSGWCEDMTRKETIDYCSETAASMI 70
Query: 69 VNHPDYALLAGRVAVSNLHKITKNSFSETIKDMYNYYNKRSGKKASLVADDVYEIIMKNA 128
HP+Y ++ R+ VS +H+IT +SF E IK Y K G +V++++Y II+++
Sbjct: 71 TKHPEYGQISSRIIVSYIHEITMDSFVEKIK----YIQKHRG----MVSEEMYGIILEHG 122
Query: 129 ACLDGAIIYDRDFDFDYFGFKTLERSYLLKMDSRVVERPQHMLMRVSVGIHKDDTDSALK 188
++G I Y+ DF F YFG TL +SYL+K+ ++ERPQ M MRV++ IHK D + +
Sbjct: 123 ETIEGMINYENDFLFSYFGILTLMKSYLIKVGEEIIERPQDMFMRVALQIHKTDFEKVRE 182
Query: 189 TYHLMSQHWFTHATPTLFNAGTPQPQLSSCFLLCMKDDSIEGIYDTLKKCAIISKSAGGI 248
Y+L+S H+FTHATPTL+N+ PQL+SCFL+ ++DSIEG+Y + + AII+K +GGI
Sbjct: 183 VYNLLSGHYFTHATPTLYNSCLKNPQLASCFLITPREDSIEGVYHMINQAAIITKYSGGI 242
Query: 249 GLSIHNIRASGSYIHGTNGSSNGIVPMLQVFNDTARYVDQGGGKRKGAFAIYLEPWHADI 308
GL++H IR+ GS + T G SNGI+P++QV N T RY++QG +R G+ AI+LEPWH +I
Sbjct: 243 GLNLHGIRSKGSSLRSTGGRSNGIIPLIQVLNATKRYINQGAERRPGSIAIFLEPWHMEI 302
Query: 309 FEFLDLRKNQGKEECRARDLFYALWVPDLFMERVRDDGKWSLFCPSDASGLADSWGIEFE 368
F+FL+LRKN G EE RARD+F ALW+ DLFMERV+++ +WSLFCPS A GL+D WG EF
Sbjct: 303 FDFLELRKNTGPEEFRARDIFTALWINDLFMERVKNNEEWSLFCPSQAVGLSDVWGEEFN 362
Query: 369 HLYSQYEEEGRAKMVISARKLWFEILNSQIETGTPYMLFKDSCNRKSNQQNLGTIKSSNL 428
LY +YE+ ++ V+ A+KLW I+ +QIETGTPYM +KD+CNR SNQQ+LGTIKSSNL
Sbjct: 363 ALYCKYEKT-ISRTVVPAQKLWKAIIEAQIETGTPYMCYKDACNRLSNQQHLGTIKSSNL 421
Query: 429 CTEIVEFSSPEETAVCNLASIALPRYVREKGVPVQSNVSKLVGSRDSKNRLFDFERLAEV 488
C EIVE+SS EET+VCNLASI LP +V K+ FDFE V
Sbjct: 422 CAEIVEYSSGEETSVCNLASICLPMFV--------------------KDGWFDFEAFRRV 461
Query: 489 TKIITENLNKIIDVNHYPIETTRRSNLRHRPIGIGIQGLADTFILLGLPFESPEAQQLNK 548
KI+T NLN++ID N+YP+E RRSN+R+RPIGIG+QGLAD F +L L FES A+ LN+
Sbjct: 462 VKILTVNLNRVIDFNYYPVEEARRSNMRNRPIGIGVQGLADLFAILRLAFESDGARSLNQ 521
Query: 549 DIFETIYYHALKASAELAVKDGPYETYFGSPMSKGILQVDMWNITPSDRWDWSSLREMIS 608
DIFE +YY A++AS ELA K+GP+ +Y GSP+SKGI ++ S WDW LRE I
Sbjct: 522 DIFEAMYYSAMEASCELAEKEGPFPSYEGSPISKGIFHFELAGRKASGNWDWEGLRERIR 581
Query: 609 KNGVRNSLLVAPMPTASTSQILGNNECFEPYTSNIYTRRVLSGEFIVVNKHLLKDLTELG 668
++GVRNSLL+A MPTA TSQI GNNE FEP+ SNIYTRR +GEF +VN+HL+ DL LG
Sbjct: 582 RHGVRNSLLIALMPTAGTSQIFGNNEAFEPHASNIYTRRTHAGEFQIVNQHLVNDLVRLG 641
Query: 669 LWSHALKTKIIYENGSVSKISEIPEELKAIYKTVWEIKQKTLVDMAADRGCYIDQSQSLN 728
LWS+ +K +I GS+ I+ IP E++ IYKT WEIK K+++D+AADR ++DQSQSLN
Sbjct: 642 LWSYEMKNLVIENEGSIQNITSIPHEIREIYKTAWEIKMKSVIDLAADRQVFVDQSQSLN 701
Query: 729 IHMEQPDHGKLTSLHFYAWSKGMKTGMYYLRTRAAADAIKFTVDTSVLNNEKANRADND 787
I + +P + +LTS+HFY + G+KTGMYYLRTR AIKFTVD + ++ D D
Sbjct: 702 IFIAKPTYSQLTSMHFYGYHCGLKTGMYYLRTRPITSAIKFTVDKKLAEKTLSSMNDTD 760
>sp|Q7T6Y8|RIR1_MIMIV Ribonucleoside-diphosphate reductase large subunit OS=Acanthamoeba
polyphaga mimivirus GN=RNR1 PE=3 SV=2
Length = 881
Score = 743 bits (1917), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 376/830 (45%), Positives = 531/830 (63%), Gaps = 47/830 (5%)
Query: 4 IKRDGRKEPVRFDKITARLKKLSYGLSKEHCDPVLVAQKVCAGVYKGVTTTQLDELAAET 63
+ +G + + + I ++K+ + H D + + + + T +D T
Sbjct: 72 LDHNGSIQVITSEIIRTYVEKIFEKMEVTHLDIDKMTKNIFPKLKSINTIKDIDNQIIST 131
Query: 64 AAAMTVNHPDYALLAGRVAVSNLHKITKNSFSETIKDMYNYYNK-RSGKKASLVADDVYE 122
A+ M +H DY +A + ++NLH T + F ET + +YN NK S K A ++++++Y
Sbjct: 132 ASEMVTDHYDYPKIAVWILMTNLHDNTSDDFLETAEKLYN--NKSESNKNAPIISENIYN 189
Query: 123 IIMKNAACLDGAIIYDRDFDFDYFGFKTLERSYLLKMDSRVVERPQHMLMRVSVGIH--K 180
I K+ ++ I YDRD++ FGF+TLE+SYL +++ ++VERPQH+ MRV++ +H K
Sbjct: 190 FIKKHIKEINRVIRYDRDYNLTIFGFRTLEKSYLKRINKKIVERPQHLFMRVAITLHYRK 249
Query: 181 DDTDSALKTYHLMSQHWFTHATPTLFNAGTPQPQLSSCFLLCMKDDSIEGIYDTLKKCAI 240
+D D +TY +S+ +FTHATPTLFNAGT QLSSCFLL + DS+E I + K+CA+
Sbjct: 250 NDLDRIFETYKYLSKGYFTHATPTLFNAGTTHEQLSSCFLLGI-GDSLEEISECWKECAL 308
Query: 241 ISKSAGGIGLSIHNIRASGSYIHGTNGSSNGIVPMLQVFNDTARYVDQGGGKRKGAFAIY 300
ISK AGGIG+ + NIR G+YI T G + G+ +L +FND +RY +QGG KR G+FAI+
Sbjct: 309 ISKHAGGIGIHMTNIRVEGAYIASTQGEAGGL-RVLTIFNDISRYANQGG-KRPGSFAIF 366
Query: 301 LEPWHADIFEFLDLRKNQGKEECRARDLFYALWVPDLFMERVRDDGKWSLFCPSDASGLA 360
+EPWH DIF FLDL+KN G E RARDLF L + D+FMERV D WSL CPS L
Sbjct: 367 IEPWHGDIFFFLDLKKNTGAETERARDLFLGLMINDIFMERVYKDDVWSLMCPSQCPNLL 426
Query: 361 DSWGIEFEHLYSQYEEEGRAKMVISARKLWFEILNSQIETGTPYMLFKDSCNRKSNQQNL 420
+ +G EF Y +YE EG I A LWF+I+ SQIETG PY++FKD+ N KSNQ N+
Sbjct: 427 NKYGDEFTKEYLKYESEGIYLKQIRAIDLWFKIMESQIETGVPYVMFKDAINDKSNQINI 486
Query: 421 GTIKSSNLCTEIVEFSSPEETAVCNLASIALPRYVRE-KGVPVQSNVSKLVGSRDSKNRL 479
G + SNLC EIVE S +VCNL+SI LPR+V+ VP
Sbjct: 487 GVVNGSNLCCEIVEVSDKNNFSVCNLSSICLPRFVKIIDEVPT----------------- 529
Query: 480 FDFERLAEVTKIITENLNKIIDVNHYPIETTRRSNLRHRPIGIGIQGLADTFILLGLPFE 539
F++++L ++++I+T NLN IID+N YP++ TR +NLR RPIGIG+QGLAD F + PF+
Sbjct: 530 FNYQKLFKISRILTRNLNNIIDINFYPLDKTRITNLRDRPIGIGVQGLADVFAMFKTPFD 589
Query: 540 SPEAQQLNKDIFETIYYHALKASAELAVKDGPYETYFGSPMSKGILQVDMWNITPSD--- 596
S A+ LN+ IFETIYY AL S +LA + G Y+TY GSP+S+G Q D+WN S
Sbjct: 590 SEIARDLNRKIFETIYYGALTESNKLAREFGTYQTYQGSPISQGKFQFDLWNFDKSQLSG 649
Query: 597 RWDWSSLREMISKNGVRNSLLVAPMPTASTSQILGNNECFEPYTSNIYTRRVLSGEFIVV 656
WDW LR+ I +GVRNSL+ MPTASTSQI+G NEC EPYT NIY+R ++GE+ V+
Sbjct: 650 MWDWELLRQEILNHGVRNSLVTTCMPTASTSQIMGWNECIEPYTENIYSRSTMAGEYFVI 709
Query: 657 NKHLLKDLTELGLWSHALKTKIIYENGSVSKISEIPEELKAIYKTVWEIKQKTLVDMAAD 716
NKHL+KDL ELG+W+ + I Y GSV+ I IP+ +KAIY+TVWEI QK++++MAAD
Sbjct: 710 NKHLIKDLIELGVWNSEMVDLIKYYKGSVANIPNIPDNIKAIYRTVWEIPQKSIIEMAAD 769
Query: 717 RGCYIDQSQSLNIHMEQPDHGKLTSLHFYAWSKGMKTGMYYLRTRAAADAIKFTVDTSVL 776
R ++DQ+QS+N+++++P +L S FYAW KG+KTGMYYLR++ A+ A +F +D +
Sbjct: 770 RAPFVDQTQSMNLYIDKPSFARLNSCLFYAWRKGLKTGMYYLRSKPASSANQFGIDIDKI 829
Query: 777 NNEKANRA-------------DNDVEANLAQVVCS-----LKNQEECMAC 808
++ N + ++ +VC L+ EC++C
Sbjct: 830 KEIESKNGIKKQEDTFDLTDLTNTINQQVSGMVCRFVPAHLRKPGECLSC 879
>sp|P0C8H9|RIR1_ASFWA Ribonucleoside-diphosphate reductase large subunit OS=African swine
fever virus (isolate Warthog/Namibia/Wart80/1980)
GN=War-055 PE=3 SV=1
Length = 778
Score = 524 bits (1349), Expect = e-147, Method: Compositional matrix adjust.
Identities = 311/768 (40%), Positives = 443/768 (57%), Gaps = 84/768 (10%)
Query: 65 AAMTVNHPDYALLAGRVAVSNLHKITKNSFSETIKDMYNYYNKRSGKKASLVADDVYEII 124
+A+T+ H DY+ LA R++V LH+ T +SFS+ ++ ++ + S ++ +++
Sbjct: 42 SALTILHYDYSTLAARLSVYQLHQSTASSFSKAVR-------LQAAQSCSRLSPQFVDVV 94
Query: 125 MKNAACLDGAIIYDRDFDFDYFGFKTLERSYLLK-MDSRVVERPQHMLMRVSVGIHK--- 180
K A D I Y+RD+ G +T++ SYLLK D ++ERPQ MRV++ I+
Sbjct: 95 YKYKAIFDSYIDYNRDYKLSLLGIETMKNSYLLKNKDGVIMERPQDAYMRVAIMIYGMGK 154
Query: 181 -DDTDSALKTYHLMSQHWFTHATPTLFNAGTPQPQLSSCFLLCMKDDSIEGIYDTLKKCA 239
+ L TY L+SQH THA+PT+FNAGT +PQLSSCFLL + +D++E +YD +K
Sbjct: 155 VVNIKMILLTYDLLSQHIITHASPTMFNAGTKKPQLSSCFLLNV-NDNLENLYDMVKTAG 213
Query: 240 IISKSAGGIGLSIHNIRASGSYIHGTNGSSNGIVPMLQVFNDTARYVDQGGGKRKGAFAI 299
IIS GGIGL + IRA S+I G+ SNGI + + N + Y +QGG R GA+A+
Sbjct: 214 IISGGGGGIGLCLSGIRAKNSFISGSGLRSNGIQNYIMLQNASQCYANQGG-LRPGAYAV 272
Query: 300 YLEPWHADIFEFLDLRKNQGK---EECRARDLFYALWVPDLFMERVRD------DGKWSL 350
YLE WH DIF FL++ + +G+ + A +L Y LWVPDLFME + D DG+W L
Sbjct: 273 YLELWHQDIFTFLEMPRLKGQMAEQRLNAPNLKYGLWVPDLFMEILEDQIHNRGDGRWYL 332
Query: 351 FCPSDASGLADSWGIE----------FEHLYSQYEEEGRAKMVISAR---KLWFEILNSQ 397
F P A L + +E F+ LY QY E R V +A+ K WF+ +
Sbjct: 333 FSPDQAPNLHKVFDLERSQHENAHREFKKLYYQYVAEKRYTGVTTAKEIIKAWFKTV--- 389
Query: 398 IETGTPYMLFKDSCNRKSNQQNLGTIKSSNLCTEIV---EFSSPEETAVCNLASIALPRY 454
I+ G PY+ FKD+ NRKSN ++GTI +SNLC E+ E VCNLA++ L +
Sbjct: 390 IQVGNPYIGFKDAINRKSNLSHVGTITNSNLCIEVTIPCWEGDKAEQGVCNLAAVNLAAF 449
Query: 455 VREKGVPVQSNVSKLVGSRDSKNRLFDFERLAEVTKIITENLNKIIDVNHYPIETTRRSN 514
+RE G +D+ L E + +TENL+ IID +YP E TRRSN
Sbjct: 450 IRENG--------------------YDYRGLIEASGNVTENLDNIIDNGYYPTEATRRSN 489
Query: 515 LRHRPIGIGIQGLADTFILLGLPFESPEAQQLNKDIFETIYYHALKASAELAVKDGPYET 574
+RHRPIGIG+ GLAD F L + F SPEA +++ I +YY A++ S ELA + G + +
Sbjct: 490 MRHRPIGIGVFGLADVFASLKIKFGSPEAIAMDEAIHAALYYGAMRRSIELAKEKGSHPS 549
Query: 575 YFGSPMSKGILQVDMW----NITPS-------------DRWDWSSLREMISKNGVRNSLL 617
+ GS SKG+LQ D+W ++ PS R W LR + + GVRN L
Sbjct: 550 FPGSAASKGLLQPDLWVRCGDLIPSWEERVAQTTQGVLTRKSWRQLR-LAAIQGVRNGYL 608
Query: 618 VAPMPTASTSQILGNNECFEPYTSNIYTRRVLSGEFIVVNKHLLKDLTELGLWSHALKTK 677
A MPTA++S G NECFEP+TSN+YTRR LSGEFIV+NK+L+ DL E+ LW+ A++ +
Sbjct: 609 TALMPTATSSNSTGKNECFEPFTSNLYTRRTLSGEFIVLNKYLIDDLKEINLWTEAIQLQ 668
Query: 678 IIYENGSVSKISEIPEELKAIYKTVWEIKQKTLVDMAADRGCYIDQSQSLNIHMEQPDHG 737
++ GS+ I +IP E++ YKT E+ QK L AA R ++ QS SLN + +P+
Sbjct: 669 LLNAGGSIQHILDIPAEIRDRYKTSREMNQKILTKHAAARNPFVSQSMSLNYYFYEPELS 728
Query: 738 KLTSLHFYAWSKGMKTGMYYLRTRAAADAIKFTVDTSVLNNEKANRAD 785
++ ++ W KG+ TG YY A T + N+EKA AD
Sbjct: 729 QVLTVLVLGWKKGLTTGSYYCHFSPGAG----TQKKIIRNSEKACNAD 772
>sp|P0C8H8|RIR1_ASFP4 Ribonucleoside-diphosphate reductase large subunit OS=African swine
fever virus (isolate Tick/South Africa/Pretoriuskop
Pr4/1996) GN=Pret-057 PE=3 SV=1
Length = 778
Score = 521 bits (1342), Expect = e-147, Method: Compositional matrix adjust.
Identities = 310/768 (40%), Positives = 442/768 (57%), Gaps = 84/768 (10%)
Query: 65 AAMTVNHPDYALLAGRVAVSNLHKITKNSFSETIKDMYNYYNKRSGKKASLVADDVYEII 124
+A+T+ H DY+ LA R++V LH+ T +SFS+ ++ ++ + S ++ +++
Sbjct: 42 SALTILHYDYSTLAARLSVYQLHQSTASSFSKAVR-------LQAAQSCSRLSPQFVDVV 94
Query: 125 MKNAACLDGAIIYDRDFDFDYFGFKTLERSYLLK-MDSRVVERPQHMLMRVSVGIHKD-- 181
K A D I Y RD+ G +T++ SYLLK D ++ERPQ MRV++ I+
Sbjct: 95 YKYKAIFDSYIDYSRDYKLSLLGIETMKNSYLLKNKDGVIMERPQDAYMRVAIMIYGMGK 154
Query: 182 --DTDSALKTYHLMSQHWFTHATPTLFNAGTPQPQLSSCFLLCMKDDSIEGIYDTLKKCA 239
+ L TY L+S+H THA+PT+FNAGT +PQLSSCFLL + +D++E +YD +K
Sbjct: 155 VVNIKMILLTYDLLSRHIITHASPTMFNAGTKKPQLSSCFLLNV-NDNLENLYDMVKTAG 213
Query: 240 IISKSAGGIGLSIHNIRASGSYIHGTNGSSNGIVPMLQVFNDTARYVDQGGGKRKGAFAI 299
IIS GGIGL + IRA S+I G+ SNGI + + N + Y +QGG R GA+A+
Sbjct: 214 IISGGGGGIGLCLSGIRAKNSFISGSGLRSNGIQNYIMLQNASQCYANQGG-LRPGAYAV 272
Query: 300 YLEPWHADIFEFLDLRKNQGK---EECRARDLFYALWVPDLFMERVRD------DGKWSL 350
YLE WH DIF FL++ + +G+ + A +L Y LWVPDLFME + D DG+W L
Sbjct: 273 YLELWHQDIFTFLEMPRLKGQMAEQRLNAPNLKYGLWVPDLFMEILEDQIHNRGDGRWYL 332
Query: 351 FCPSDASGLADSWGIE----------FEHLYSQYEEEGRAKMVISAR---KLWFEILNSQ 397
F P A L + +E F+ LY QY E R V +A+ K WF+ +
Sbjct: 333 FSPDQAPNLHKVFDLERSQHENAHREFKKLYYQYVAEKRYTGVTTAKEIIKAWFKTV--- 389
Query: 398 IETGTPYMLFKDSCNRKSNQQNLGTIKSSNLCTEIV---EFSSPEETAVCNLASIALPRY 454
I+ G PY+ FKD+ NRKSN ++GTI +SNLC E+ E VCNLA++ L +
Sbjct: 390 IQVGNPYIGFKDAINRKSNLSHVGTITNSNLCIEVTIPCWEGDKAEQGVCNLAAVNLAAF 449
Query: 455 VREKGVPVQSNVSKLVGSRDSKNRLFDFERLAEVTKIITENLNKIIDVNHYPIETTRRSN 514
+RE G +D+ L E + +TENL+ IID +YP E TRRSN
Sbjct: 450 IRENG--------------------YDYRGLIEASGNVTENLDNIIDNGYYPTEATRRSN 489
Query: 515 LRHRPIGIGIQGLADTFILLGLPFESPEAQQLNKDIFETIYYHALKASAELAVKDGPYET 574
+RHRPIGIG+ GLAD F L + F SPEA +++ I +YY A++ S ELA + G + +
Sbjct: 490 MRHRPIGIGVFGLADVFASLKIKFGSPEAIAMDEAIHAALYYGAMRRSIELAKEKGSHPS 549
Query: 575 YFGSPMSKGILQVDMW----NITPS-------------DRWDWSSLREMISKNGVRNSLL 617
+ GS SKG+LQ D+W ++ PS R W LR + + GVRN L
Sbjct: 550 FPGSAASKGLLQPDLWVRCGDLIPSWEERVAQTTQGVLTRKSWRQLR-LAAIQGVRNGYL 608
Query: 618 VAPMPTASTSQILGNNECFEPYTSNIYTRRVLSGEFIVVNKHLLKDLTELGLWSHALKTK 677
A MPTA++S G NECFEP+TSN+YTRR LSGEFIV+NK+L+ DL E+ LW+ A++ +
Sbjct: 609 TALMPTATSSNSTGKNECFEPFTSNLYTRRTLSGEFIVLNKYLIDDLKEINLWTEAIQLQ 668
Query: 678 IIYENGSVSKISEIPEELKAIYKTVWEIKQKTLVDMAADRGCYIDQSQSLNIHMEQPDHG 737
++ GS+ I +IP E++ YKT E+ QK L AA R ++ QS SLN + +P+
Sbjct: 669 LLNAGGSIQHILDIPAEIRDRYKTSREMNQKILTKHAAARNPFVSQSMSLNYYFYEPELS 728
Query: 738 KLTSLHFYAWSKGMKTGMYYLRTRAAADAIKFTVDTSVLNNEKANRAD 785
++ ++ W KG+ TG YY A T + N+EKA AD
Sbjct: 729 QVLTVLVLGWKKGLTTGSYYCHFSPGAG----TQKKIIRNSEKACNAD 772
>sp|P42491|RIR1_ASFB7 Ribonucleoside-diphosphate reductase large subunit OS=African swine
fever virus (strain Badajoz 1971 Vero-adapted)
GN=Ba71V-045 PE=3 SV=1
Length = 778
Score = 518 bits (1334), Expect = e-146, Method: Compositional matrix adjust.
Identities = 307/765 (40%), Positives = 440/765 (57%), Gaps = 78/765 (10%)
Query: 65 AAMTVNHPDYALLAGRVAVSNLHKITKNSFSETIKDMYNYYNKRSGKKASLVADDVYEII 124
+A+T+ H DY+ LA R++V LH+ T +SFS+ ++ ++ + S ++ +++
Sbjct: 42 SALTILHYDYSTLAARLSVYQLHQSTASSFSKAVR-------LQAAQSCSRLSPQFVDVV 94
Query: 125 MKNAACLDGAIIYDRDFDFDYFGFKTLERSYLLK-MDSRVVERPQHMLMRVSVGIHKD-- 181
K A D I Y+RD+ G +T++ SYLLK D ++ERPQ MRV++ I+
Sbjct: 95 YKYKAIFDSYIDYNRDYKLSLLGIETMKNSYLLKNKDGVIMERPQDAYMRVAIMIYGMGK 154
Query: 182 --DTDSALKTYHLMSQHWFTHATPTLFNAGTPQPQLSSCFLLCMKDDSIEGIYDTLKKCA 239
+ L TY L+S+H THA+PT+FNAGT +PQLSSCFLL + +D++E +YD +K
Sbjct: 155 VVNIKMILLTYDLLSRHVITHASPTMFNAGTKKPQLSSCFLLNV-NDNLENLYDMVKTAG 213
Query: 240 IISKSAGGIGLSIHNIRASGSYIHGTNGSSNGIVPMLQVFNDTARYVDQGGGKRKGAFAI 299
IIS GGIGL + IRA S+I G+ SNGI + + N + Y +QGG R GA+A+
Sbjct: 214 IISGGGGGIGLCLSGIRAKNSFISGSGLRSNGIQNYIMLQNASQCYANQGG-LRPGAYAV 272
Query: 300 YLEPWHADIFEFLDLRKNQGK---EECRARDLFYALWVPDLFMERVRD------DGKWSL 350
YLE WH DIF FL + + +G+ + A +L Y LWVPDLFME + D DG W L
Sbjct: 273 YLELWHQDIFTFLQMPRLKGQMAEQRLNAPNLKYGLWVPDLFMEILEDQIHNRGDGTWYL 332
Query: 351 FCPSDASGLADSWGIE----------FEHLYSQYEEEGRAKMVISARKLWFEILNSQIET 400
F P A L + +E F+ LY QY E R V +A+++ E + I+
Sbjct: 333 FSPDQAPNLHKVFDLERSQHENAHREFKKLYYQYVAEKRYTGVTTAKEIIKEWFKTVIQV 392
Query: 401 GTPYMLFKDSCNRKSNQQNLGTIKSSNLCTEIV---EFSSPEETAVCNLASIALPRYVRE 457
G PY+ FKD+ NRKSN ++GTI +SNLC E+ E VCNLA++ L ++RE
Sbjct: 393 GNPYIGFKDAINRKSNLSHVGTITNSNLCIEVTIPCWEGDKAEQGVCNLAAVNLAAFIRE 452
Query: 458 KGVPVQSNVSKLVGSRDSKNRLFDFERLAEVTKIITENLNKIIDVNHYPIETTRRSNLRH 517
G +D+ L E + +TENL+ IID +YP E TRRSN+RH
Sbjct: 453 NG--------------------YDYRGLIEASGNVTENLDNIIDNGYYPTEATRRSNMRH 492
Query: 518 RPIGIGIQGLADTFILLGLPFESPEAQQLNKDIFETIYYHALKASAELAVKDGPYETYFG 577
RPIGIG+ GLAD F L + F SPEA +++ I +YY A++ S ELA + G + ++ G
Sbjct: 493 RPIGIGVFGLADVFASLKMKFGSPEAIAMDEAIHAALYYGAMRRSIELAKEKGSHPSFPG 552
Query: 578 SPMSKGILQVDMW----NITPS-------------DRWDWSSLREMISKNGVRNSLLVAP 620
S SKG+LQ D+W +++ S R W LR + + GVRN L A
Sbjct: 553 SAASKGLLQPDLWVRCGDLSSSWEERVAQTTQGVLTRKSWWQLR-LAAMQGVRNGYLTAL 611
Query: 621 MPTASTSQILGNNECFEPYTSNIYTRRVLSGEFIVVNKHLLKDLTELGLWSHALKTKIIY 680
MPTA++S G NECFEP+TSN+YTRR LSGEFIV+NK+L+ DL E+ LW+ A++ +++
Sbjct: 612 MPTATSSNSTGKNECFEPFTSNLYTRRTLSGEFIVLNKYLIDDLKEIDLWTEAIQQQLLN 671
Query: 681 ENGSVSKISEIPEELKAIYKTVWEIKQKTLVDMAADRGCYIDQSQSLNIHMEQPDHGKLT 740
GS+ I +IP E++ YKT E+ QK L AA R ++ QS SLN + +P+ ++
Sbjct: 672 AGGSIQHILDIPAEIRDRYKTSREMNQKILTKHAAARNPFVSQSMSLNYYFYEPELSQVL 731
Query: 741 SLHFYAWSKGMKTGMYYLRTRAAADAIKFTVDTSVLNNEKANRAD 785
++ W KG+ TG YY A K + N+EKA AD
Sbjct: 732 TVLVLGWKKGLTTGSYYCHFSPGAGTQKKIIR----NSEKACNAD 772
>sp|P26685|RIR1_ASFM2 Ribonucleoside-diphosphate reductase large subunit OS=African swine
fever virus (isolate Tick/Malawi/Lil 20-1/1983)
GN=Mal-053 PE=3 SV=1
Length = 779
Score = 514 bits (1323), Expect = e-144, Method: Compositional matrix adjust.
Identities = 307/767 (40%), Positives = 438/767 (57%), Gaps = 82/767 (10%)
Query: 65 AAMTVNHPDYALLAGRVAVSNLHKITKNSFSETIKDMYNYYNKRSGKKASLVADDVYEII 124
+A+T+ H DY+ LA R++V LH+ T +SFS+ + + ++ + S ++ +++
Sbjct: 43 SALTILHYDYSTLAARLSVYLLHQSTASSFSKAV-------SLQAAQSCSRLSSHFVDVV 95
Query: 125 MKNAACLDGAIIYDRDFDFDYFGFKTLERSYLLK-MDSRVVERPQHMLMRVSVGIHKD-- 181
K A D I Y RD+ G +T++ SYLLK D ++ERPQ MRV++ IH
Sbjct: 96 YKYKAIFDSYIDYSRDYKLSLLGIETMKNSYLLKNKDGVIMERPQDAYMRVAIMIHGMGR 155
Query: 182 --DTDSALKTYHLMSQHWFTHATPTLFNAGTPQPQLSSCFLLCMKDDSIEGIYDTLKKCA 239
+ L TY L+S+H THA+PT+FNAGT +PQLSSCFLL + +D++E +YD +K
Sbjct: 156 VVNMKMILLTYDLLSRHVITHASPTMFNAGTKKPQLSSCFLLNV-NDNLENLYDMVKTAG 214
Query: 240 IISKSAGGIGLSIHNIRASGSYIHGTNGSSNGIVPMLQVFNDTARYVDQGGGKRKGAFAI 299
IIS GGIGL + IRA S+I G+ SNGI + + N + Y +QGG R GA+A+
Sbjct: 215 IISGGGGGIGLCLSGIRAKNSFISGSGLRSNGIQNYIVLQNASQCYANQGG-LRPGAYAV 273
Query: 300 YLEPWHADIFEFLDLRKNQGK---EECRARDLFYALWVPDLFMERVRD------DGKWSL 350
YLE WH DIF FL + + +G+ + A +L Y LWVPDLFME + D DG W L
Sbjct: 274 YLELWHQDIFTFLQMPRLKGQMAEQRLNAPNLKYGLWVPDLFMEILEDQIHNRGDGTWYL 333
Query: 351 FCPSDASGLADSWGIE----------FEHLYSQYEEEGRAKMVISARKLWFEILNSQIET 400
F P A L + +E F+ LY QY E R V +A+++ E + ++
Sbjct: 334 FSPDQAPNLHKVFDLERSQHENAHREFKKLYYQYVAEKRYTGVTTAKEIIKEWFKTVVQV 393
Query: 401 GTPYMLFKDSCNRKSNQQNLGTIKSSNLCTEIV---EFSSPEETAVCNLASIALPRYVRE 457
G PY+ FKD+ NRKSN ++GTI +SNLC EI + E VCNLA++ L ++RE
Sbjct: 394 GNPYIGFKDAINRKSNLSHVGTITNSNLCIEITIPCWEGNEAEQGVCNLAAVNLAAFIRE 453
Query: 458 KGVPVQSNVSKLVGSRDSKNRLFDFERLAEVTKIITENLNKIIDVNHYPIETTRRSNLRH 517
+D+ L E +TENL+ IID +YP E TRRSN+RH
Sbjct: 454 SS--------------------YDYRGLIEAAGNVTENLDNIIDNGYYPTEATRRSNMRH 493
Query: 518 RPIGIGIQGLADTFILLGLPFESPEAQQLNKDIFETIYYHALKASAELAVKDGPYETYFG 577
RPIGIG+ GLAD F L + F SPEA +++ I +YY A++ S ELA + G + ++ G
Sbjct: 494 RPIGIGVFGLADVFASLKMKFGSPEAIAIDEAIHAALYYGAMRRSIELAKEKGSHPSFPG 553
Query: 578 SPMSKGILQVDMW----NITPSDRWD---------------WSSLREMISKNGVRNSLLV 618
S SKG+LQ D+W ++ PS W+ W LR + + GVRN L
Sbjct: 554 SAASKGLLQPDLWVRCGDLIPS--WENRVAQTTQGVLTPKKWWQLR-LAAIQGVRNGYLT 610
Query: 619 APMPTASTSQILGNNECFEPYTSNIYTRRVLSGEFIVVNKHLLKDLTELGLWSHALKTKI 678
A MPTA++S G NECFEP+TSN+YTRR LSGEFI++NK+L+ DL E+ LWS ++ ++
Sbjct: 611 ALMPTATSSNSTGKNECFEPFTSNLYTRRTLSGEFIILNKYLMDDLEEINLWSEDIQQQL 670
Query: 679 IYENGSVSKISEIPEELKAIYKTVWEIKQKTLVDMAADRGCYIDQSQSLNIHMEQPDHGK 738
+ GS+ I +IP E++ YKT E+ QK L AA R ++ QS SLN + +P+ +
Sbjct: 671 LNAGGSIQHILDIPAEIRERYKTSREMNQKILTKHAAARNPFVSQSMSLNYYFYEPELSQ 730
Query: 739 LTSLHFYAWSKGMKTGMYYLRTRAAADAIKFTVDTSVLNNEKANRAD 785
+ ++ W KG+ TG YY A T + N+EKA AD
Sbjct: 731 VLTVLVLGWKKGLTTGSYYCHFSPGAG----TQKKIIRNSEKACNAD 773
>sp|P0C8H7|RIR1_ASFK5 Ribonucleoside-diphosphate reductase large subunit OS=African swine
fever virus (isolate Pig/Kenya/KEN-50/1950) GN=Ken-057
PE=3 SV=1
Length = 779
Score = 513 bits (1322), Expect = e-144, Method: Compositional matrix adjust.
Identities = 308/768 (40%), Positives = 434/768 (56%), Gaps = 84/768 (10%)
Query: 65 AAMTVNHPDYALLAGRVAVSNLHKITKNSFSETIKDMYNYYNKRSGKKASLVADDVYEII 124
+A+T+ H DY+ LA R++V LH+ T +SFSE + + ++ + S ++ +++
Sbjct: 43 SALTILHYDYSTLAARLSVYLLHQSTASSFSEAV-------SLQAAQSCSRLSPQFVDVV 95
Query: 125 MKNAACLDGAIIYDRDFDFDYFGFKTLERSYLLK-MDSRVVERPQHMLMRVSVGIHKD-- 181
K A D I Y RD+ G +T++ SYLLK D ++ERPQ MRV++ I+
Sbjct: 96 YKYKAIFDSYIDYSRDYKLTLLGIETMKNSYLLKNKDGVIMERPQDAYMRVAIMIYGMGR 155
Query: 182 --DTDSALKTYHLMSQHWFTHATPTLFNAGTPQPQLSSCFLLCMKDDSIEGIYDTLKKCA 239
+ L TY L+S+H THA+PT+FNAGT +PQLSSCFLL + +D++E +YD +K
Sbjct: 156 VVNMKMILLTYDLLSRHVITHASPTMFNAGTKKPQLSSCFLLNV-NDNLENLYDMVKTAG 214
Query: 240 IISKSAGGIGLSIHNIRASGSYIHGTNGSSNGIVPMLQVFNDTARYVDQGGGKRKGAFAI 299
IIS GGIGL + IRA S+I G+ SNGI + + N + Y +QGG R GA+A+
Sbjct: 215 IISGGGGGIGLCLSGIRAKNSFISGSGLRSNGIQNYIVLQNASQCYANQGG-LRPGAYAV 273
Query: 300 YLEPWHADIFEFLDLRKNQGK---EECRARDLFYALWVPDLFMERVRD------DGKWSL 350
YLE WH DIF FL + + +G+ + A +L Y LWVPDLFME + D DG W L
Sbjct: 274 YLELWHQDIFTFLQMPRLKGQMAEQRLNAPNLKYGLWVPDLFMEILEDQIHDRGDGTWYL 333
Query: 351 FCPSDASGLADSWGIE----------FEHLYSQYEEEGRAKMVISARKLWFEILNSQIET 400
F P A L + +E F LY QY E R V +A+++ E + I+
Sbjct: 334 FSPDQAPNLHKVFDLERSRHKNAHREFRKLYYQYVAEKRYTGVTTAKEIIKEWFKTVIQV 393
Query: 401 GTPYMLFKDSCNRKSNQQNLGTIKSSNLCTEIV---EFSSPEETAVCNLASIALPRYVRE 457
G PY+ FKD+ NRKSN ++GTI +SNLC EI S E VCNLA++ L ++RE
Sbjct: 394 GNPYIGFKDAINRKSNLSHVGTITNSNLCIEITIPCWEGSEAEQGVCNLAAVNLAAFIRE 453
Query: 458 KGVPVQSNVSKLVGSRDSKNRLFDFERLAEVTKIITENLNKIIDVNHYPIETTRRSNLRH 517
+D+ L E +TENL+ IID +YP E TRRSN+RH
Sbjct: 454 NS--------------------YDYRGLIEAAGNVTENLDNIIDNGYYPTEATRRSNMRH 493
Query: 518 RPIGIGIQGLADTFILLGLPFESPEAQQLNKDIFETIYYHALKASAELAVKDGPYETYFG 577
RPIGIG+ GLAD F + F SPEA +++ I +YY A++ S ELA + G + ++ G
Sbjct: 494 RPIGIGVFGLADVFASFKMKFGSPEAIAMDEAIHAALYYGAMRRSVELAKEKGSHPSFPG 553
Query: 578 SPMSKGILQVDMWN--------------------ITPSDRWDWSSLREMISKNGVRNSLL 617
S SKG+LQ D+W +TP W LR + + GVRN L
Sbjct: 554 SAASKGLLQPDLWVRCDDLVFSWEERVAQTTQGVLTPKKWWQ---LR-LAAMQGVRNGYL 609
Query: 618 VAPMPTASTSQILGNNECFEPYTSNIYTRRVLSGEFIVVNKHLLKDLTELGLWSHALKTK 677
A MPTA++S G NECFEP+TSN+YTRR LSGEFIV+NK+L+ DL E+ LW+ A++ +
Sbjct: 610 TALMPTATSSNSTGKNECFEPFTSNLYTRRTLSGEFIVLNKYLIDDLKEINLWTEAIQQQ 669
Query: 678 IIYENGSVSKISEIPEELKAIYKTVWEIKQKTLVDMAADRGCYIDQSQSLNIHMEQPDHG 737
++ GS+ I +IP E++ YKT E+ QK L AA R ++ QS SLN + +P+
Sbjct: 670 LLNAGGSIQHILDIPAEIRERYKTSREMNQKILTKHAAARNPFVSQSMSLNYYFYEPELS 729
Query: 738 KLTSLHFYAWSKGMKTGMYYLRTRAAADAIKFTVDTSVLNNEKANRAD 785
++ ++ W KG+ TG YY A T + N+EKA AD
Sbjct: 730 QVLTVLVLGWKKGLTTGSYYCHFSPGAG----TQKKIIRNSEKACSAD 773
>sp|Q9PL93|RIR1_CHLMU Ribonucleoside-diphosphate reductase subunit alpha OS=Chlamydia
muridarum (strain MoPn / Nigg) GN=nrdA PE=3 SV=1
Length = 1047
Score = 493 bits (1269), Expect = e-138, Method: Compositional matrix adjust.
Identities = 299/840 (35%), Positives = 455/840 (54%), Gaps = 66/840 (7%)
Query: 3 VIKRDGRKEPVRFDKITARLKKLSYGLSKEHCDPVLVAQKVCAGVYKGVTTTQLDELAAE 62
V+ +DG + ++ ARL + E D L+ + Y G+ +++
Sbjct: 239 VLSKDGSTYMITHSQLLARLARACSRFP-ETTDAALLTDMAFSNFYSGIKESEVVLACIM 297
Query: 63 TAAAMTVNHPDYALLAGRVAVSNLHK--ITKNSFSETIKDMYNYYNKRSGKKASLVADDV 120
A A PDYA +A + + ++K + ++ E ++ +Y + KR ++ D
Sbjct: 298 AARANIEKEPDYAFVAAELLLDVVYKEALDRSRGDEDLEQVYRDHFKRY-----IMEGDS 352
Query: 121 YEI--IMKNAACLDG---AIIYDRDFDFDYFGFKTLERSYLLKMDSRVVERPQHMLMRVS 175
Y + +KN LD A+ RD F Y G + L Y D R +E PQ MRV+
Sbjct: 353 YRLNPELKNLFDLDALANAMDLSRDLQFSYMGIQNLYDRYFNHDDGRRLETPQIFWMRVA 412
Query: 176 VGI---HKDDTDSALKTYHLMSQHWFTHATPTLFNAGTPQPQLSSCFLLCMKDDSIEGIY 232
+G+ +D T A+ Y+L+S +T ATPTLFN+G QLSSC+L ++DD + IY
Sbjct: 413 MGLALKEQDKTYWAITFYNLLSTFRYTPATPTLFNSGMRHSQLSSCYLSTVQDDLV-NIY 471
Query: 233 DTLKKCAIISKSAGGIGLSIHNIRASGSYIHGTNGSSNGIVPMLQVFNDTARYVDQGGGK 292
+ A++SK AGGIG IRA+G+ I GTNG S G++P ++V NDTA V+QGG K
Sbjct: 472 KVISDNAMLSKWAGGIGNDWTAIRATGALIKGTNGKSQGVIPFIKVTNDTAVAVNQGG-K 530
Query: 293 RKGAFAIYLEPWHADIFEFLDLRKNQGKEECRARDLFYALWVPDLFMERVRDDGKWSLFC 352
RKGA +YLE WH D +FL+LRKN G + RA D+ A W+PDLF +R++ G W+LF
Sbjct: 531 RKGAVCVYLEVWHLDYEDFLELRKNTGDDRRRAHDVNTASWIPDLFFKRLQQKGSWTLFS 590
Query: 353 PSDASGLADSWGIEFEHLYSQYEE-----EGRAKMVISARKLWFEILNSQIETGTPYMLF 407
P D GL D++G EFE LY +YE E R + A LW ++L+ ETG P+M F
Sbjct: 591 PDDVPGLHDAYGEEFERLYEEYERKVDSGEIRLYKKVEAEDLWRKMLSMLFETGHPWMTF 650
Query: 408 KDSCNRKSNQQNLGTIKSSNLCTEIVEFSSPEETAVCNLASIALPRYVREKGVPVQSNVS 467
KD N +S Q + G ++ SNLCTEI+ S ETAVCNL S+ L +++ + G+
Sbjct: 651 KDPSNIRSAQDHTGVVRCSNLCTEILLNCSETETAVCNLGSVNLVQHILDDGL------- 703
Query: 468 KLVGSRDSKNRLFDFERLAEVTKIITENLNKIIDVNHYPIETTRRSNLRHRPIGIGIQGL 527
D E+L+E I L+ +ID+N YP + + +N HR IG+G+ G
Sbjct: 704 -------------DEEKLSETISIAVRMLDNVIDINFYPTKEAKEANFAHRAIGLGVMGF 750
Query: 528 ADTFILLGLPFESPEAQQLNKDIFETIYYHALKASAELAVKDGPYETYFGSPMSKGILQV 587
D L + + S EA + E I Y+A++AS LA + G Y +Y GS +G+L +
Sbjct: 751 QDALYKLDISYASQEAVEFADYSSELISYYAIQASCLLAKERGTYSSYKGSKWDRGLLPI 810
Query: 588 DM------------WNITPSDRWDWSSLREMISKNGVRNSLLVAPMPTASTSQILGNNEC 635
D + S R DW +R +I ++G+RN L+A PTA+ S I+G +
Sbjct: 811 DTIQLLANYRGKDNLQMDTSVRKDWEPIRSLIREHGMRNCQLMAIAPTATISNIIGVTQS 870
Query: 636 FEPYTSNIYTRRVLSGEFIVVNKHLLKDLTELGLWSHALKTKIIYENGSVSKISEIPEEL 695
EP +++ + LSGEF + N +L++ L +LG+W + + Y +GS+ +I +P+ +
Sbjct: 871 IEPTYKHLFVKSNLSGEFTIPNVYLIEKLKKLGIWDADMLDDLKYFDGSLLEIERVPDHI 930
Query: 696 KAIYKTVWEIKQKTLVDMAADRGCYIDQSQSLNIHMEQPDHGKLTSLHFYAWSKGMKTGM 755
K I+ T +EI+ + +++ A+ R +ID QSLN+++ QPD KL++++ AW KG+KT
Sbjct: 931 KHIFLTAFEIEPEWILECASRRQKWIDMGQSLNLYLAQPDGKKLSNMYLTAWKKGLKT-T 989
Query: 756 YYLRTRAAADAIKFTVDTSV-------LNNEKANRADNDVEANLAQVVCSLKNQEECMAC 808
YYLR+ +A K VD + + N+ A+ A VE VCSL +E C C
Sbjct: 990 YYLRSSSATTVEKSFVDINKRGIQPRWMKNKSAS-AGIVVERASKTPVCSL--EEGCEVC 1046
>sp|O84834|RIR1_CHLTR Ribonucleoside-diphosphate reductase subunit alpha OS=Chlamydia
trachomatis (strain D/UW-3/Cx) GN=nrdA PE=3 SV=2
Length = 1047
Score = 487 bits (1253), Expect = e-136, Method: Compositional matrix adjust.
Identities = 298/840 (35%), Positives = 453/840 (53%), Gaps = 66/840 (7%)
Query: 3 VIKRDGRKEPVRFDKITARLKKLSYGLSKEHCDPVLVAQKVCAGVYKGVTTTQLDELAAE 62
V+ +DG + ++ A L + E D L+ A Y G+ +++
Sbjct: 239 VLSKDGSTYTMTHSQLLAHLARACSRFP-ETTDAALLTDMAFANFYSGIKESEVVLACIM 297
Query: 63 TAAAMTVNHPDYALLAGRVAVSNLHK--ITKNSFSETIKDMYNYYNKRSGKKASLVADDV 120
A A PDYA +A + + ++K + K+ ++E ++ + + KR + D
Sbjct: 298 AARANIEKEPDYAFVAAELLLDVVYKEALGKSKYAEDLEQAHRDHFKRY-----IAEGDT 352
Query: 121 YEI--IMKNAACLDG---AIIYDRDFDFDYFGFKTLERSYLLKMDSRVVERPQHMLMRVS 175
Y + +K+ LD A+ RD F Y G + L Y + +E PQ MRV+
Sbjct: 353 YRLNAELKHLFDLDALADAMDLSRDLQFSYMGIQNLYDRYFNHHEGCRLETPQIFWMRVA 412
Query: 176 VGI---HKDDTDSALKTYHLMSQHWFTHATPTLFNAGTPQPQLSSCFLLCMKDDSIEGIY 232
+G+ +D T A+ Y+L+S +T ATPTLFN+G QLSSC+L ++D+ + IY
Sbjct: 413 MGLALNEQDKTSWAITFYNLLSTFRYTPATPTLFNSGMRHSQLSSCYLSTVQDNLV-NIY 471
Query: 233 DTLKKCAIISKSAGGIGLSIHNIRASGSYIHGTNGSSNGIVPMLQVFNDTARYVDQGGGK 292
+ A++SK AGGIG IRA+G+ I GTNG S G++P ++V NDTA V+QGG K
Sbjct: 472 KVIADNAMLSKWAGGIGNDWTAIRATGALIKGTNGRSQGVIPFIKVTNDTAVAVNQGG-K 530
Query: 293 RKGAFAIYLEPWHADIFEFLDLRKNQGKEECRARDLFYALWVPDLFMERVRDDGKWSLFC 352
RKGA +YLE WH D +FL+LRKN G E RA D+ A W+PDLF +R++ G W+LF
Sbjct: 531 RKGAVCVYLEVWHLDYEDFLELRKNTGDERRRAHDVNIASWIPDLFFKRLQQKGTWTLFS 590
Query: 353 PSDASGLADSWGIEFEHLYSQYEE-----EGRAKMVISARKLWFEILNSQIETGTPYMLF 407
P D GL D++G EFE LY +YE E R + A LW ++L+ ETG P+M F
Sbjct: 591 PDDVPGLHDAYGEEFERLYEEYERKVDTGEIRLFKKVEAEDLWRKMLSMLFETGHPWMTF 650
Query: 408 KDSCNRKSNQQNLGTIKSSNLCTEIVEFSSPEETAVCNLASIALPRYVREKGVPVQSNVS 467
KD N +S Q + G ++ SNLCTEI+ S ETAVCNL SI L +++ G+
Sbjct: 651 KDPSNIRSAQDHKGVVRCSNLCTEILLNCSETETAVCNLGSINLVQHIVGDGL------- 703
Query: 468 KLVGSRDSKNRLFDFERLAEVTKIITENLNKIIDVNHYPIETTRRSNLRHRPIGIGIQGL 527
D E+L+E I L+ +ID+N YP + + +N HR IG+G+ G
Sbjct: 704 -------------DEEKLSETISIAVRMLDNVIDINFYPTKEAKEANFAHRAIGLGVMGF 750
Query: 528 ADTFILLGLPFESPEAQQLNKDIFETIYYHALKASAELAVKDGPYETYFGSPMSKGILQV 587
D L + + S EA + E I Y+A++AS LA + G Y +Y GS +G+L +
Sbjct: 751 QDALYKLDISYASQEAVEFADYSSELISYYAIQASCLLAKERGTYSSYKGSKWDRGLLPI 810
Query: 588 DM------------WNITPSDRWDWSSLREMISKNGVRNSLLVAPMPTASTSQILGNNEC 635
D + S R DW +R ++ ++G+R+ L+A PTA+ S I+G +
Sbjct: 811 DTIQLLANYRGEANLQMDTSSRKDWEPIRSLVKEHGMRHCQLMAIAPTATISNIIGVTQS 870
Query: 636 FEPYTSNIYTRRVLSGEFIVVNKHLLKDLTELGLWSHALKTKIIYENGSVSKISEIPEEL 695
EP +++ + LSGEF + N +L++ L +LG+W + + Y +GS+ +I IP+ L
Sbjct: 871 IEPTYKHLFVKSNLSGEFTIPNVYLIEKLKKLGIWDADMLDDLKYFDGSLLEIERIPDHL 930
Query: 696 KAIYKTVWEIKQKTLVDMAADRGCYIDQSQSLNIHMEQPDHGKLTSLHFYAWSKGMKTGM 755
K I+ T +EI+ + +++ A+ R +ID QSLN+++ QPD KL++++ AW KG+KT
Sbjct: 931 KHIFLTAFEIEPEWIIECASRRQKWIDMGQSLNLYLAQPDGKKLSNMYLTAWKKGLKT-T 989
Query: 756 YYLRTRAAADAIKFTVDTSV-------LNNEKANRADNDVEANLAQVVCSLKNQEECMAC 808
YYLR+ +A K VD + + N+ A+ A VE VCSL +E C AC
Sbjct: 990 YYLRSSSATTVEKSFVDINKRGIQPRWMKNKSAS-AGIIVERAKKAPVCSL--EEGCEAC 1046
>sp|Q9Z6S5|RIR1_CHLPN Ribonucleoside-diphosphate reductase subunit alpha OS=Chlamydia
pneumoniae GN=nrdA PE=3 SV=1
Length = 1044
Score = 479 bits (1233), Expect = e-134, Method: Compositional matrix adjust.
Identities = 281/773 (36%), Positives = 415/773 (53%), Gaps = 71/773 (9%)
Query: 35 DPVLVAQKVCAGVYKGVTTTQLDELAAETAAAMTVNHPDYALLAGRVAVS---------- 84
D L+A +Y G+ ++ A A PDYA +A + S
Sbjct: 268 DSQLLADMAFMNLYSGIKEDEVTTACIMAARANIEREPDYAFIAAELLTSSLYEETLGCS 327
Query: 85 ----NLHKITKNSFSETIKDMYNYYNKRSGKKASLVADDVYEIIMKNAACLDGAIIYDRD 140
NL +I K F E I + Y K L A L + RD
Sbjct: 328 SQDPNLSEIHKKHFKEYILNGEEYRLNPQLKDYDLDA-------------LSEVLDLSRD 374
Query: 141 FDFDYFGFKTLERSYLLKMDSRVVERPQHMLMRVSVGIHKDDTDS----ALKTYHLMSQH 196
F Y G + L Y + R +E Q MRVS+G+ ++ + A+ Y+L+S
Sbjct: 375 QQFSYMGVQNLYDRYFNLHEGRRLETAQIFWMRVSMGLALNEGEQKNFWAITFYNLLSTF 434
Query: 197 WFTHATPTLFNAGTPQPQLSSCFLLCMKDDSIEGIYDTLKKCAIISKSAGGIGLSIHNIR 256
+T ATPTLFN+G QLSSC+L +KDD + IY + A++SK AGGIG ++R
Sbjct: 435 RYTPATPTLFNSGMRHSQLSSCYLSTVKDD-LSHIYKVISDNALLSKWAGGIGNDWTDVR 493
Query: 257 ASGSYIHGTNGSSNGIVPMLQVFNDTARYVDQGGGKRKGAFAIYLEPWHADIFEFLDLRK 316
A+G+ I GTNG S G++P ++V NDTA V+QGG KRKGA +YLE WH D +FL+LRK
Sbjct: 494 ATGAVIKGTNGKSQGVIPFIKVANDTAIAVNQGG-KRKGAMCVYLENWHLDYEDFLELRK 552
Query: 317 NQGKEECRARDLFYALWVPDLFMERVRDDGKWSLFCPSDASGLADSWGIEFEHLYSQYE- 375
N G E R D+ A W+PDLF +R+ G W+LF P D GL +++G+EFE LY +YE
Sbjct: 553 NTGDERRRTHDINTASWIPDLFFKRLEKKGMWTLFSPDDVPGLHEAYGLEFEKLYEEYER 612
Query: 376 --EEGRAKMV--ISARKLWFEILNSQIETGTPYMLFKDSCNRKSNQQNLGTIKSSNLCTE 431
E G ++ + A LW ++L+ ETG P++ FKD N +SNQ ++G ++ SNLCTE
Sbjct: 613 KVESGEIRLYKKVEAEVLWRKMLSMLYETGHPWITFKDPSNIRSNQDHVGVVRCSNLCTE 672
Query: 432 IVEFSSPEETAVCNLASIALPRYVREKGVPVQSNVSKLVGSRDSKNRLFDFERLAEVTKI 491
I+ S ETAVCNL SI L ++R N D E+L E I
Sbjct: 673 ILLNCSESETAVCNLGSINLVEHIR--------------------NDKLDEEKLKETISI 712
Query: 492 ITENLNKIIDVNHYPIETTRRSNLRHRPIGIGIQGLADTFILLGLPFESPEAQQLNKDIF 551
L+ +ID+N YP +++NL HR +G+G+ G D L + + S EA + + +
Sbjct: 713 AIRILDNVIDLNFYPTPEAKQANLTHRAVGLGVMGFQDVLYELNISYASQEAVEFSDECS 772
Query: 552 ETIYYHALKASAELAVKDGPYETYFGSPMSKGILQVDMWN------------ITPSDRWD 599
E I Y+A+ AS+ LA + G Y +Y GS +G L +D + S + D
Sbjct: 773 EIIAYYAILASSLLAKERGTYASYSGSKWDRGYLPLDTIELLKETRGEHNVLVDTSSKKD 832
Query: 600 WSSLREMISKNGVRNSLLVAPMPTASTSQILGNNECFEPYTSNIYTRRVLSGEFIVVNKH 659
W+ +R+ I K G+RNS ++A PTA+ S I+G + EP +++ + LSGEF + N +
Sbjct: 833 WTPVRDTIQKYGMRNSQVMAIAPTATISNIIGVTQSIEPMYKHLFVKSNLSGEFTIPNTY 892
Query: 660 LLKDLTELGLWSHALKTKIIYENGSVSKISEIPEELKAIYKTVWEIKQKTLVDMAADRGC 719
L+K L ELGLW + + Y +GS+ +I IP LK ++ T +EI+ + +++ + R
Sbjct: 893 LIKKLKELGLWDAEMLDDLKYFDGSLLEIERIPNHLKKLFLTAFEIEPEWIIECTSRRQK 952
Query: 720 YIDQSQSLNIHMEQPDHGKLTSLHFYAWSKGMKTGMYYLRTRAAADAIKFTVD 772
+ID SLN+++ +PD KL++++ AW KG+KT YYLR++AA K +D
Sbjct: 953 WIDMGVSLNLYLAEPDGKKLSNMYLTAWKKGLKT-TYYLRSQAATSVEKSFID 1004
>sp|Q6R7H4|RIR1_OSHVF Ribonucleoside-diphosphate reductase large subunit OS=Ostreid
herpesvirus 1 (isolate France) PE=3 SV=1
Length = 835
Score = 426 bits (1096), Expect = e-118, Method: Compositional matrix adjust.
Identities = 266/774 (34%), Positives = 419/774 (54%), Gaps = 53/774 (6%)
Query: 71 HPDYALLAGRVAVSNLHKITKNSFSETIKDMYNYYNKRSGKKASL------VADDVYEII 124
HPDYA LAGRV+ T +F++ + + + +G ++ + ++D++ + +
Sbjct: 81 HPDYAFLAGRVSAYMTQINTPKTFTDAVYGIQMAVGETNGFRSPMKPVKGGLSDEIVDFV 140
Query: 125 MKNAACLDGAIIYDRDFDFDYFGFKTLERSYLLKMDSRVVERPQHMLMRVSVGIHKDDTD 184
++ A LDG I RD+ +Y G L +K++ ++ ERPQ++ MRV++ + ++
Sbjct: 141 NEHGARLDGMIDDVRDYSHNYMGITGLLNGVAIKVNKKLYERPQYVFMRVAMAMTDLSSE 200
Query: 185 SAL----KTYHLMSQHWFTHATPTLFNAGTPQPQLSSCFLLCMKDDSIEGIYDTLKKCAI 240
+AL +TY L+S + A+P LFN GT +SCFLL M D+ + + +
Sbjct: 201 TALEDIWQTYMLISGQCLSMASPVLFNGGTSSSNTASCFLLDMGDNMVSITKKVAQTMTL 260
Query: 241 ISKSAGGIGLSIHNIRASGSYIHGTNGSSNGIVPMLQVFNDTARYVDQGGGKRKGAFAIY 300
I+K+ GGIG++ +RA+GS I G G S+GI L +F+ A+ VDQG KR GA A Y
Sbjct: 261 IAKN-GGIGINFSKLRATGSKI-GMAGKSSGIGGKLNLFDRVAQSVDQGENKRPGAIAGY 318
Query: 301 LEPWHADIFEFLDLRKNQGKEECRARDLF-YALWVPDLFMERVRDDGKWSLFCPSDASGL 359
L WHAD++++L R + E R + L + DLFMERV +D +WSLF P+D GL
Sbjct: 319 LTDWHADMYDWLYSRYSGSGNEVNKRHVLNMGLVMSDLFMERVENDKEWSLFSPNDVVGL 378
Query: 360 ADSWGIEFEHLYSQYEEEGRAK-MVISARKLWFEILNSQIETGTPYMLFKDSCNRKSNQQ 418
+ +G +F Y +E + K +SARKL+ +I N TG PY+LFKD+ N +SN +
Sbjct: 379 EELYGEKFVRAYRAHEANPKIKRTTVSARKLFSDIANMMWSTGEPYILFKDAVNERSNHK 438
Query: 419 NLGTIKSSNLCTEIVEFSSPEETAVCNLASIALPRYVR-EKGVPVQSNVSKLVG-SRDSK 476
+LGTIK+SNLC EIV++ E AVCNLA+I + +V E G ++ G +
Sbjct: 439 HLGTIKNSNLCCEIVQYCDTNEIAVCNLATICVSNFVNVETGEIDFEGIADAAGVACKGI 498
Query: 477 NRLFDFERL----AEVTKIITENLNKIIDVNHYPIET----TRRSNLRHRPIGIGIQGLA 528
N L D + ++ ++ E ++++VN + SNL+HRP GIG+QGL
Sbjct: 499 NNLIDKQNYDLGNEQLMRLADERTEEVVEVNGIKFDAKYNLVSYSNLKHRPQGIGMQGLH 558
Query: 529 DTFILLGLPFESPEAQQLNKDIFETIYYHALKASAELAVKDGPYETYF--GSPMSKGILQ 586
D F+ L +P++S A +L I E IYY A++ S ++A + GPY +Y+ + +G LQ
Sbjct: 559 DVFMKLKIPYDSEMAFRLAALIQEAIYYGAVRESVKIAEEKGPYPSYYWDNNTHREGKLQ 618
Query: 587 VDMWNITPSDR------WDWSSLREMISKNGVRNSLLVAPMPTASTSQILGNNECFEPYT 640
D DR ++W + + K G+ NS++ A P+AS+SQ+ N E E T
Sbjct: 619 FDFLEGFDRDRDLTHELFNWREVLKKFEKFGINNSVVTAQPPSASSSQLNDNVESIEAIT 678
Query: 641 SNIYTRRVLSGEFIVVNKHLLKDLTELGLWSHALKTKIIYENGSVSKISEIPEELKAIYK 700
SN +T+ + G+FI++NKHL KDL +LG+W + I +GS+ I IP+ ++ IYK
Sbjct: 679 SNRFTKGIKDGKFIIINKHLQKDLEDLGMWDAQMVGDIEANDGSIQNIERIPKNIREIYK 738
Query: 701 TVWEIKQKTLVDMAADRGCYIDQSQSLNI----HMEQPDHGKLTSLHFYAWSKGMKTGMY 756
T EI K +V + A +IDQ+ S N+ +++ P + ++ +KTGMY
Sbjct: 739 TAREIDHKAVVKICAAIQPFIDQTISKNMFVPKNVDNPVQLIMENV-ILGHKMKLKTGMY 797
Query: 757 YLRTRAAADAIKFTVDTSVLNNEKANRADNDVEANLAQVVCSLKNQEECMACGS 810
Y R A F K N D D+ + ++V +C AC +
Sbjct: 798 YTRGIPAMKQQNFG---------KMNFQDKDIGKPVPELV-------DCEACSA 835
>sp|Q9ZLF9|RIR1_HELPJ Ribonucleoside-diphosphate reductase subunit alpha OS=Helicobacter
pylori (strain J99) GN=nrdA PE=3 SV=1
Length = 788
Score = 377 bits (969), Expect = e-103, Method: Compositional matrix adjust.
Identities = 263/822 (31%), Positives = 419/822 (50%), Gaps = 92/822 (11%)
Query: 3 VIKRDGRKEPVRFDKITARLKKLSYGLSKEHCDPVLVAQKVCAGVYKGVTTTQLDELAAE 62
V+KR+GR EP+ KI K + L + V ++ +TT ++ + +
Sbjct: 4 VVKRNGRIEPLDITKIQKYTKDATDNLEGVSQSELEVDARL--QFRDKITTEEIQQTLIK 61
Query: 63 TAA-AMTVNHPDYALLAGRVAVSNL-HKITKNSFSETIKDMYNYYNKRSGKKASLVADDV 120
TA + ++ P+++ +A R+ + +L HK++ + +K+ Y + + +K ++
Sbjct: 62 TAVDKIDIDTPNWSFVASRLFLYDLYHKVSGFTGYRHLKE----YFENAEEKGRILKGFK 117
Query: 121 YEIIMKNAACLDGAIIYDRDFDFDYFGFKTLERSYLLK-MDSRVVERPQHMLMRVSVGIH 179
+ ++ L+ I +RDF F+Y G KTL YLLK ++ +E PQHM M +++ +
Sbjct: 118 EKFDLE---FLNSQIKPERDFQFNYLGIKTLYDRYLLKDANNHPIELPQHMFMSIAMFLA 174
Query: 180 KDDTD---SALKTYHLMSQHWFTHATPTLFNAGTPQPQLSSCFLLCMKDDSIEGIYDTLK 236
+++ + AL+ Y ++S+ ATPTL NA T + QLSSC++ D+ IEGI+D+ K
Sbjct: 175 QNEQELNKIALEFYEVLSKFEAMCATPTLANARTTKHQLSSCYIGSTPDN-IEGIFDSYK 233
Query: 237 KCAIISKSAGGIGLSIHNIRASGSYIHGTNGSSNGIVPMLQVFNDTARYVDQGGGKRKGA 296
+ A++SK GGIG +R+ GSYI G +S G +P L++ ND A VDQ G RKGA
Sbjct: 234 EMALLSKYGGGIGWDFSLVRSIGSYIDGHKNASAGTIPFLKIANDVAIAVDQLG-TRKGA 292
Query: 297 FAIYLEPWHADIFEFLDLRKNQGKEECRARDLFYALWVPDLFMERVRDDGKWSLFCPSDA 356
A+YLE WH D+ EF+DLRKN G E RA DLF ALWV DLFM+RV +D W+LF P +
Sbjct: 293 IAVYLEIWHIDVMEFIDLRKNSGDERRRAHDLFPALWVCDLFMKRVLEDAMWTLFDPYEC 352
Query: 357 SGLADSWGIEFEHLYSQYEEEGR-AKMVISARKLWFEILNSQIETGTPYMLFKDSCNRKS 415
L + +G +FE Y +YE++ + K I+A+ LW +IL + E G P++ FKD+ NR +
Sbjct: 353 KDLTELYGQDFEKRYLEYEKDPKIIKEYINAKDLWKKILMNYFEAGLPFLAFKDNANRCN 412
Query: 416 NQQNLGTIKSSNLCTEIVEFSSPEETAV-CNLASIALPRYVREKGVPVQSNVSKLVG--- 471
+ G I+SSNLCTEI + ++P + A+ + ++ V SN++K
Sbjct: 413 PNAHAGIIRSSNLCTEIFQNTAPNHYYMQIEYTDGAIEFFEEKELVTTDSNITKCANKLT 472
Query: 472 ----------------SRDSKNRLFDF-----------ERLAEVTKIITENLNKIIDVNH 504
++D + + + E + V I+ L+ +ID+N
Sbjct: 473 STDILKGKKIYIATKVAKDGQTAVCNLASINLSKINTEEDIKRVVPIMVRLLDNVIDLNF 532
Query: 505 YPIETTRRSNLRHRPIGIGIQGLADTFILLGLPFESPEAQQLNKDIFETIYYHALKASAE 564
YP + +NL++R IG+G+ G A + + S E + + E I YHA+ SA
Sbjct: 533 YPNRKVKATNLQNRAIGLGVMGEAQMLAEHQIAWGSKEHLEKIDALMEQISYHAIDTSAN 592
Query: 565 LAVKDGPYETYFGSPMSKGILQVDMWN-----ITPSDRW----DWSSLREMISKNGVRNS 615
LA + G Y+ + S SKGI +D N +T + DW LRE + NG+RN
Sbjct: 593 LAKEKGVYKDFENSEWSKGIFPIDKANNEALKLTEKGLFNHACDWQGLREKVKANGMRNG 652
Query: 616 LLVAPMPTASTSQILGNNECFEPYTSNIYTRRVLSGEFIVVNKHLLKDLTELGLWSHALK 675
L+A PT+S S ++G + EP + LSG VV +L + W+
Sbjct: 653 YLMAIAPTSSISILVGTTQTIEPIYKKKWFEENLSGLIPVVVPNL-----NVETWN---- 703
Query: 676 TKIIYENGSVSKISEIPEELKAIYKTVWEIKQKTLVDMAADRGCYIDQSQSLNIHM--EQ 733
Y + ++I K L+ AA R +IDQ QS+N+ + E
Sbjct: 704 ----------------------FYTSAYDIDAKDLIKAAAVRQKWIDQGQSINVFLRIEN 741
Query: 734 PDHGKLTSLHFYAWSKGMKTGMYYLRTRAAADAIKFTVDTSV 775
L ++ AW G+K+ YYLR+ + + K +D SV
Sbjct: 742 ASGKTLHEIYTLAWKLGLKS-TYYLRSESPSIDEKSVLDRSV 782
>sp|P55982|RIR1_HELPY Ribonucleoside-diphosphate reductase subunit alpha OS=Helicobacter
pylori (strain ATCC 700392 / 26695) GN=nrdA PE=3 SV=1
Length = 788
Score = 377 bits (968), Expect = e-103, Method: Compositional matrix adjust.
Identities = 264/822 (32%), Positives = 418/822 (50%), Gaps = 92/822 (11%)
Query: 3 VIKRDGRKEPVRFDKITARLKKLSYGLSKEHCDPVLVAQKVCAGVYKGVTTTQLDELAAE 62
V+KR+GR EP+ KI K + L + V ++ +TT ++ + +
Sbjct: 4 VVKRNGRIEPLDITKIQKYTKDATDNLEGVSQSELEVDARL--QFRDKITTEEIQQTLIK 61
Query: 63 TAA-AMTVNHPDYALLAGRVAVSNL-HKITKNSFSETIKDMYNYYNKRSGKKASLVADDV 120
TA + ++ P+++ +A R+ + +L HK++ + +K+ Y + + +K ++
Sbjct: 62 TAVDKIDIDTPNWSFVASRLFLYDLYHKVSGFTGYRHLKE----YFENAEEKGRILKGFK 117
Query: 121 YEIIMKNAACLDGAIIYDRDFDFDYFGFKTLERSYLLK-MDSRVVERPQHMLMRVSVGIH 179
+ ++ L+ I +RDF F+Y G KTL YLLK ++ +E PQHM M +++ +
Sbjct: 118 EKFDLE---FLNSQIKPERDFQFNYLGIKTLYDRYLLKDANNNPIELPQHMFMSIAMFLA 174
Query: 180 KDDTDS---ALKTYHLMSQHWFTHATPTLFNAGTPQPQLSSCFLLCMKDDSIEGIYDTLK 236
+++ + AL+ Y ++S+ ATPTL NA T + QLSSC++ D+ IEGI+D+ K
Sbjct: 175 QNEQEPNKIALEFYEVLSKFEAMCATPTLANARTTKHQLSSCYIGSTPDN-IEGIFDSYK 233
Query: 237 KCAIISKSAGGIGLSIHNIRASGSYIHGTNGSSNGIVPMLQVFNDTARYVDQGGGKRKGA 296
+ A++SK GGIG +R+ GSYI G +S G +P L++ ND A VDQ G RKGA
Sbjct: 234 EMALLSKYGGGIGWDFSLVRSIGSYIDGHKNASAGTIPFLKIANDVAIAVDQLG-TRKGA 292
Query: 297 FAIYLEPWHADIFEFLDLRKNQGKEECRARDLFYALWVPDLFMERVRDDGKWSLFCPSDA 356
A+YLE WH D+ EF+DLRKN G E RA DLF ALWV DLF++RV +D W+LF P +
Sbjct: 293 IAVYLEIWHIDVMEFIDLRKNSGDERRRAHDLFPALWVCDLFLKRVLEDAMWTLFDPYEC 352
Query: 357 SGLADSWGIEFEHLYSQYEEEGR-AKMVISARKLWFEILNSQIETGTPYMLFKDSCNRKS 415
L + +G +FE Y +YE++ + K I+A+ LW +IL + E G P++ FKD+ NR +
Sbjct: 353 KDLTELYGQDFEKRYLEYEKDPKIIKEYINAKDLWKKILMNYFEAGLPFLAFKDNANRCN 412
Query: 416 NQQNLGTIKSSNLCTEIVEFSSPEETAVCNLASIALPRYVREKG-VPVQSNVSKLVG--- 471
+ G I+SSNLCTEI + ++P + + + EK V SN++K
Sbjct: 413 PNAHAGIIRSSNLCTEIFQNTAPNHYYMQIEYTDGTIEFFEEKELVTTDSNITKCANKLT 472
Query: 472 ----------------SRDSKNRLFDF-----------ERLAEVTKIITENLNKIIDVNH 504
++D + + + E + V I+ L+ +ID+N
Sbjct: 473 STDILKGKPIYIATKVAKDGQTAVCNLASINLSKINTEEDIKRVVPIMVRLLDNVIDLNF 532
Query: 505 YPIETTRRSNLRHRPIGIGIQGLADTFILLGLPFESPEAQQLNKDIFETIYYHALKASAE 564
YP + +NL++R IG+G+ G A + + S E + + E I YHA+ SA
Sbjct: 533 YPNRKVKATNLQNRAIGLGVMGEAQMLAEHQIAWGSKEHLEKIDALMEQISYHAIDTSAN 592
Query: 565 LAVKDGPYETYFGSPMSKGILQVDMWN-----ITPSDRW----DWSSLREMISKNGVRNS 615
LA + G Y+ + S SKGI +D N +T + DW LRE + NG+RN
Sbjct: 593 LAKEKGVYKDFENSEWSKGIFPIDKANNEALKLTEKGLFNHACDWQGLREKVKANGMRNG 652
Query: 616 LLVAPMPTASTSQILGNNECFEPYTSNIYTRRVLSGEFIVVNKHLLKDLTELGLWSHALK 675
L+A PT+S S ++G + EP + LSG VV +L + W+
Sbjct: 653 YLMAIAPTSSISILVGTTQTIEPIYKKKWFEENLSGLIPVVVPNL-----NVETWN---- 703
Query: 676 TKIIYENGSVSKISEIPEELKAIYKTVWEIKQKTLVDMAADRGCYIDQSQSLNIHM--EQ 733
Y + ++I K L+ AA R +IDQ QSLN+ + E
Sbjct: 704 ----------------------FYTSAYDIDAKDLIKAAAVRQKWIDQGQSLNVFLRIEN 741
Query: 734 PDHGKLTSLHFYAWSKGMKTGMYYLRTRAAADAIKFTVDTSV 775
L ++ AW G+K+ YYLR+ + + K +D SV
Sbjct: 742 ASGKTLHDIYTLAWKLGLKS-TYYLRSESPSIDEKSVLDRSV 782
>sp|O66503|RIR1_AQUAE Ribonucleoside-diphosphate reductase subunit alpha OS=Aquifex
aeolicus (strain VF5) GN=nrdA PE=3 SV=1
Length = 801
Score = 374 bits (959), Expect = e-102, Method: Compositional matrix adjust.
Identities = 270/838 (32%), Positives = 423/838 (50%), Gaps = 121/838 (14%)
Query: 1 MYVIKRDGRKEPVRFDKITARLKKLSYGLSKEHCDPVLVAQKVCAGVYKGVTTTQLDELA 60
MYVIKR GRKE + +KI +K GL + DP+ + G+TT ++ +L
Sbjct: 3 MYVIKRSGRKEKLDINKIRIAIKFACEGL---NVDPLELEADAQIQFRDGITTKEIQQLL 59
Query: 61 AETAA-AMTVNHPDYALLAGRVAVSNLHKITKNSFSETIKD---MYNYYNKRSGKK--AS 114
+TAA ++ PD+ A R+ + +L+K + +++D Y YN+++
Sbjct: 60 IKTAAEKVSAERPDWTYTAARLLLYDLYKDVAHLRGYSLRDDLGKYKPYNRKNFYSFVKE 119
Query: 115 LVADDVY-EIIMKNAACLD-----GAIIYDRDFDFDYFGFKTLERSYLLK-MDSRVVERP 167
V +Y E +++N + D I +RD F Y G K L YL++ + RV+E P
Sbjct: 120 YVEKGIYGEYLLENYSEEDFNKLANYIKPERDLYFTYTGIKILYDRYLVRDEEGRVIELP 179
Query: 168 QHMLMRVSVGIH-----KDDTDSALKTYHLMSQHWFTHATPTLFNAGTPQPQLSSCFLLC 222
Q M M +++ + ++ A K Y ++S+H T ATPTL NA P QLSSCF+L
Sbjct: 180 QEMYMLIAMTLAVPEKPEERLKWAKKFYDVLSEHKVTVATPTLMNARRPFTQLSSCFVLT 239
Query: 223 MKDDSIEGIYDTLKKCAIISKSAGGIGLSIHNIRASGSYIHGTNGSSNGIVPMLQVFNDT 282
+ DD + I+D +KK +ISK AGG+G+ + IRA+G+ I G+S+G++P++++ NDT
Sbjct: 240 VDDDLFD-IFDNVKKAGMISKFAGGLGVYLGKIRATGAPIRKFKGASSGVIPVVKLINDT 298
Query: 283 ARYVDQGGGKRKGAFAIYLEPWHADIFEFLDLRKNQGKEECRARDLFYALWVPDLFMERV 342
YVDQ G RKG+ +I L+ WH DI +FL+++ N G E +A D+ A+ +PDLFM+R+
Sbjct: 299 MTYVDQ-LGMRKGSASITLDIWHKDILDFLEVKTNVGDERKKAHDIHPAVSIPDLFMKRL 357
Query: 343 RDDGKWSLFCPS---------------------------------------DASGLADSW 363
++ W+L P + GL D +
Sbjct: 358 KNREDWTLIDPYWARQYITRKIYDGKYKEVKPLPGSHYYVGIKEDGTQDILEPKGLEDFY 417
Query: 364 GIEFEHLYSQYEEE--GRAKMVISARKLWFEILNSQIETGTPYMLFKDSCNRKSNQQNLG 421
G EFE Y + EE AK +++ +LW +L ETG PY+ F+D NRK+ ++ G
Sbjct: 418 GEEFEKWYLELEENLPSYAKKKVNSFELWKRLLTVAFETGEPYIFFRDEANRKNPNKHTG 477
Query: 422 TIKSSNLCTEIVEFSSP--EETAVCNLASIALPRYVREKG-VPVQSNVSKLVGSRDSKNR 478
+ SSNLC EIV+ SP E V + + + Y +E G +PV + S +G ++
Sbjct: 478 MVYSSNLCHEIVQTMSPSKHEKPVLDPETGEI-TYKKEAGDLPVCNLGSVNLGKVHTE-- 534
Query: 479 LFDFERLAEVTKIITENLNKIIDVNHYPIETTRRSNLRHRPIGIGIQGLADTFILLGLPF 538
E + EV ++ L+ +I++N Y I +N R+R IGIG+ + G+ +
Sbjct: 535 ----EEIKEVLPLLVRMLDNVIEMNFYAIPEAEYTNKRYRAIGIGVSNYHYCLVKNGIKW 590
Query: 539 ESPEAQQLNKDIFETIYYHALKASAELAVKDGPYETYFGSPMSKGIL------QVDMWNI 592
ES E + +FE I ++ALK S ELA + G Y+ + GS SKGIL +++ +
Sbjct: 591 ESEEHLKFADKLFELIAFYALKGSLELAKERGRYKLFDGSNWSKGILFGRSVEEIEENSR 650
Query: 593 TPSDRWDWSSLREMISKNGVRNSLLVAPMPTASTSQILGNNECFEPYTSNIYTRRVLSGE 652
+ W L E I K G+RN+ L+A MPT STS ILG +P + Y +SG
Sbjct: 651 QNGNNLPWRELAEEIKKYGIRNAYLLALMPTGSTSLILGATPSIDPIFARFYKEENMSG- 709
Query: 653 FIVVNKHLLKDLTELGLWSHALKTKIIYENGSVSKISEIPEELKAI---YKTVWEIKQKT 709
+ ++P E+ YKT + I +
Sbjct: 710 ----------------------------------ILPQVPPEVDRFYWHYKTAYTIDHEW 735
Query: 710 LVDMAADRGCYIDQSQSLNIHMEQP--DHGKLTSLHFYAWSKGMKTGMYYLRTRAAAD 765
+ AA R +IDQ+QSLN+ ++ D +L+ L+ AW G+KT +YYLR+R+A D
Sbjct: 736 TIRAAAVRQKWIDQAQSLNLFVDPQNIDGPRLSRLYELAWELGLKT-IYYLRSRSAMD 792
>sp|P50646|RIR1_BHV1C Ribonucleoside-diphosphate reductase large subunit OS=Bovine
herpesvirus 1.1 (strain Cooper) GN=UL39 PE=3 SV=1
Length = 787
Score = 290 bits (742), Expect = 3e-77, Method: Compositional matrix adjust.
Identities = 191/594 (32%), Positives = 301/594 (50%), Gaps = 49/594 (8%)
Query: 201 ATPTLFNAGTPQPQLSSCFLLCMK-DDSIEGIYDTLKKCAIISKSAGGIGLSIHNIRASG 259
ATP + AG + L+SC+LL + S E + + A I + GGIG+S + +
Sbjct: 208 ATPIMLFAGRARGSLASCYLLNPQVSSSTEAVEAITTEVARILLNRGGIGISFQSFDRAV 267
Query: 260 SYIHGTNGSSNGIVPMLQVFNDTARYVDQGGGKRKGAFAIYLEPWHADIFEFLDLRKNQG 319
S GI+ L++ + A ++ +R +YLEPWH D+ L++R
Sbjct: 268 S-----RDCKRGIMGALKLLDSMAMAINSDS-ERPTGICVYLEPWHCDVRAVLNMRGLLA 321
Query: 320 KEE-CRARDLFYALWVPDLFMERV------RDDGKWSLFCPSDASGLADSWGIEFEHLYS 372
++E R +LF LWVPDL +R R+ W+LF AS L+ G F Y
Sbjct: 322 RDESTRCDNLFSCLWVPDLLFDRYLAHLEGREGVVWTLF-DDRASHLSRLHGPAFTAEYE 380
Query: 373 QYEEEGRAKMVISARKLWFEILNSQIETGTPYMLFKDSCNRKSNQQNLG-TIKSSNLCTE 431
+ E EG + + L F I+ S + TG+P+++FKD+CNR + G + SNLCTE
Sbjct: 381 RLEREGLGVETVPVQDLAFLIVRSIVMTGSPFVMFKDACNRHYHMDTAGDALTGSNLCTE 440
Query: 432 IVEFSSPEETAVCNLASIALPRYVREKGVPVQSNVSKLVGSRDSKNRLFDFERLAEVTKI 491
IV+ +SP+ VCNLAS+ LPR VRE + FDF L+
Sbjct: 441 IVQRASPDAHGVCNLASVNLPRCVREG---------------EGGALAFDFAALSTAAAT 485
Query: 492 ITENLNKIIDVNHYPIETTRRSNLRHRPIGIGIQGLADTFILLGLPFESPEAQQLNKDIF 551
+N ++ YP E R RHR +GIG QGL + LG+ SP A++LN +I
Sbjct: 486 AAIFVNAMMLGGQYPTEKAARGVARHRSLGIGFQGLHTLLLELGMDMLSPAARRLNVEIA 545
Query: 552 ETIYYHALKASAELA-VKDGPYETYFGSPMSKGILQVDMW-NITPSDRWDWSSLREMISK 609
E + + SA L P+E + S ++G++ D + + S W+ LRE +++
Sbjct: 546 ERLLLAVMATSATLCEYGCAPFEDFARSKFARGLMPFDGYEGVVLSLPRAWARLREKVAR 605
Query: 610 NGVRNSLLVAPMPTASTSQILGNNECFEPYTSNIYTRRVLSGEFIVVN--------KHLL 661
+G+ N+ VA MPT S+SQ+ +E F P +N++++ +SGE + N KH
Sbjct: 606 HGLYNAQFVALMPTVSSSQVTEGSEGFSPVFTNMFSKVTMSGELLRPNLPLMRALRKHFT 665
Query: 662 KDLTELGLWSHALKTKIIYENGSVSKISEIPEELKAIYKTVWEIKQKTLVDMAADRGCYI 721
++ + LG AL + ++ ++ P A +KT +E Q+ L+D+ ADR ++
Sbjct: 666 REASRLGA-VRALDREQWSVAAALGDLA--PGHPLAKFKTAFEYDQERLIDLCADRAPFV 722
Query: 722 DQSQSLNIHMEQPDHGK-----LTSLHFYAWSKGMKTGMYYLRTRAAADAIKFT 770
DQSQS+++ + +P GK + +L YA+ KG+KTG+YY + R A + FT
Sbjct: 723 DQSQSMSLFVTEPMDGKVPASQIMNLLVYAYKKGLKTGLYYCKIRKATNNGVFT 776
>sp|P50642|RIR1_EHV4 Ribonucleoside-diphosphate reductase large subunit OS=Equine
herpesvirus 4 (strain 1942) PE=3 SV=1
Length = 789
Score = 286 bits (731), Expect = 5e-76, Method: Compositional matrix adjust.
Identities = 188/587 (32%), Positives = 308/587 (52%), Gaps = 41/587 (6%)
Query: 201 ATPTLFNAGTPQPQLSSCFLLCMK-DDSIEGIYDTLKKCAIISKSAGGIGLSIHNIRASG 259
ATP + G ++SC+LL + D I +++ I + GGIGLS+
Sbjct: 206 ATPIMLFGGRDCGSMASCYLLNPRVTDMNSAIPALMEEVGPILCNRGGIGLSLQRFNTPP 265
Query: 260 SYIHGTNGSSNGIVPMLQVFNDTARYVDQGGGKRKGAFAIYLEPWHADIFEFLDLRKNQG 319
T G S G++ +L++ + ++ G +R +Y EPWHADI L++R
Sbjct: 266 -----TEGCSRGVMALLKLLDSMTMAINSDG-ERPTGVCVYFEPWHADIRAILNMRGMLA 319
Query: 320 KEE-CRARDLFYALWVPDLFMERVRD--DGK----WSLFCPSDASGLADSWGIEFEHLYS 372
++E R ++F +W PDLF +R + DG+ W+LF AS L +G +F Y
Sbjct: 320 RDETVRCDNIFACMWTPDLFFDRYQRYVDGESGIMWTLF-DDTASHLCHMYGNDFTREYE 378
Query: 373 QYEEEGRAKMVISARKLWFEILNSQIETGTPYMLFKDSCNRKS--NQQNLGTIKSSNLCT 430
+ E G I + + F I+ S + TG+P+++FKD+CNR + + G I SNLCT
Sbjct: 379 RLERCGFGIDAIPIQDMAFIIVRSAVMTGSPFLMFKDACNRHYHFDMRQRGAIMGSNLCT 438
Query: 431 EIVEFSSPEETAVCNLASIALPRYVREKGVPVQSNVSKLVGSRDSKNRLFDFERLAEVTK 490
EI++ + + VCNLASI LP+ + +P N++ + FDF L
Sbjct: 439 EIIQHADETQNGVCNLASINLPKCL---ALP-PPNIAGV--------PYFDFAALGRAAA 486
Query: 491 IITENLNKIIDVNHYPIETTRRSNLRHRPIGIGIQGLADTFILLGLPFESPEAQQLNKDI 550
T +N ++ + YP +++ +R +G+GIQGL TF++L L SPEA QLNK I
Sbjct: 487 TATIFVNAMMCASTYPTVKSQKGVEENRSLGLGIQGLHTTFLMLDLDMASPEAHQLNKQI 546
Query: 551 FETIYYHALKASAELA-VKDGPYETYFGSPMSKGILQVDMW-NITPSDRWDWSSLREMIS 608
E + +++KASA L + P++ + S S+G L D + N+T ++R W LR I
Sbjct: 547 AERLLLNSMKASATLCKLGMQPFKGFEDSKYSRGELPFDAYPNVTLTNRNAWRRLRTDIK 606
Query: 609 KNGVRNSLLVAPMPTASTSQILGNNECFEPYTSNIYTRRVLSGEFIVVNKHLLKDLTELG 668
+ G+ NS VA MPT S+SQ+ ++E F P +N++++ +GE + N L++ + +
Sbjct: 607 QYGLYNSQFVAYMPTVSSSQVTESSEGFSPVYTNLFSKVTATGEVLRPNVLLMRTIRSIF 666
Query: 669 LWS----HALKTKIIYENGSVSKISEIP-EELKAIYKTVWEIKQKTLVDMAADRGCYIDQ 723
AL T + V ++P + +KT +E Q L++M ADR ++DQ
Sbjct: 667 PQECARLQALSTLEAAKWSVVGAFGDLPVGHPLSKFKTAFEYDQTMLINMCADRAAFVDQ 726
Query: 724 SQSLNIHMEQPDHGKLTS-----LHFYAWSKGMKTGMYYLRTRAAAD 765
SQS+++ + +P GKL + L +A+ +G+KTGMYY + + A +
Sbjct: 727 SQSMSLFITEPADGKLPASRIMNLLVHAYKRGLKTGMYYCKIKKATN 773
>sp|O83972|RIR1_TREPA Ribonucleoside-diphosphate reductase subunit alpha OS=Treponema
pallidum (strain Nichols) GN=nrdA PE=3 SV=1
Length = 845
Score = 285 bits (728), Expect = 1e-75, Method: Compositional matrix adjust.
Identities = 215/733 (29%), Positives = 353/733 (48%), Gaps = 79/733 (10%)
Query: 58 ELAAETAAAMTVNH-PDYALLAGRVAV--------SNLHKITKNSFSETI-----KDMYN 103
+L + A +T P + L+A R+ + ++L K+ +SF E I +Y
Sbjct: 153 QLLIKAAVELTAQEAPQWELIAARLLMLDFSLALGTSLEKLNIHSFYEKITYLEEAGLYG 212
Query: 104 YYNKRSGKKASLVADDVYEIIMKNAACLDGAIIYDRDFDFDYFGFKTLERSYLLKMDSRV 163
Y + +A I + A L+ + RD F Y + R Y+++ + V
Sbjct: 213 VYIRTHYSRAE---------IEEAATYLECS----RDKLFTYSSLDMILRRYVIRTRAHV 259
Query: 164 -VERPQHMLMRVSVGIHKDDTDSAL----KTYHLMSQHWFTHATPTLFNAGTPQPQLSSC 218
+E PQ M + +++ + ++T + + Y ++S+ T ATPTL NA P QLSSC
Sbjct: 260 PLETPQEMFLGIALHLAMNETQDRMQWVKRFYTVLSKLQVTVATPTLSNARKPFHQLSSC 319
Query: 219 FLLCMKDDSIEGIYDTLKKCAIISKSAGGIGLSIHNIRASGSYIHGTNGSSNGIVPMLQV 278
F+ + D S++GIY ++ + +SK GG+GL +RA G+ I G G++ GI+ +++
Sbjct: 320 FVDTVPD-SLDGIYRSIDNFSQVSKFGGGMGLYFGKVRAVGAPIRGFQGAAGGILRWIKL 378
Query: 279 FNDTARYVDQGGGKRKGAFAIYLEPWHADIFEFLDLRKNQGKEECRARDLFYALWVPDLF 338
NDTA VDQ G R+G+ A+YL+ WH DI EFL LR N G + +A D+F A+ PDLF
Sbjct: 379 ANDTAVAVDQLG-VRQGSVAVYLDVWHKDIPEFLQLRTNNGDDRMKAHDVFPAVCYPDLF 437
Query: 339 MERVRDD--GKWSLFCPSD-----ASGLADSWGIEFEHLYSQYEEEGR-AKMVISARKLW 390
+ VRD+ W L CP + L D + E+E Y ++ R +K I ++L
Sbjct: 438 WKTVRDNLGASWYLMCPHEILTVKGYALEDFYAEEWEKRYWDCVKDARISKRTIPIKELV 497
Query: 391 FEILNSQIETGTPYMLFKDSCNRKSNQQNLGTIKSSNLCTEIVEFSSPEETAVCNLASIA 450
+L S +ETGTP+ ++D NR + + G I SNLCTEI + S + +
Sbjct: 498 RLVLKSVVETGTPFAFYRDHANRANPNGHRGIIYCSNLCTEIAQNMSAINLVSVKITEVD 557
Query: 451 LPRYVREKGVPVQSNVSKLVGSRDSKNRLFDFERLAEVTKIITENLNKIIDVNHYPIETT 510
+ V + P V L S L D + L EV ++ L+ +ID+ +YP+
Sbjct: 558 GQKVVVQTTRPGDFVVCNLASLVLSNIDLSDDKELREVVRVAVRALDNVIDLTYYPVPYA 617
Query: 511 RRSNLRHRPIGIGIQGLADTFILLGLPFESPEAQQLNKDIFETIYYHALKASAELAVKDG 570
+ +N +R IG+G+ G G+ +ES E IFE I A++AS +A + G
Sbjct: 618 QVTNAYYRAIGLGVSGYHHVLAQQGIDWESDEHLAFADRIFERINRAAIEASMTIAREKG 677
Query: 571 PYETYFGSPMSKGILQVDMWNITPSDRWDWSSLREMISKNGVRNSLLVAPMPTASTSQIL 630
Y + GS G ++ DW L+ ++ +G+RN L+A PT+STS I
Sbjct: 678 AYGCFTGSDWCTGAYFRKRGYVSE----DWQRLQREVATHGMRNGYLLAVAPTSSTSIIA 733
Query: 631 GNNECFEPYTSNIYTRRVLSGEFIVVNKHLLKDLTELGLWSHALKTKIIYENGSVSKISE 690
G +P ++ F+ K +L L
Sbjct: 734 GTTAGVDP---------IMKQYFLEEKKGMLMPRVAPSL--------------------- 763
Query: 691 IPEELKAIYKTVWEIKQKTLVDMAADRGCYIDQSQSLNIHMEQPDHGK-LTSLHFYAWSK 749
++ +YK+ ++Q+ + A R +IDQ+QS+N+++ K + L+ YAW
Sbjct: 764 -SQKTCPLYKSAHAVEQRWSIRAAGLRQRHIDQAQSVNLYITTDFTLKQVLDLYVYAWEV 822
Query: 750 GMKTGMYYLRTRA 762
GMK+ +YY+R+++
Sbjct: 823 GMKS-LYYVRSQS 834
>sp|P28846|RIR1_EHV1B Ribonucleoside-diphosphate reductase large subunit OS=Equine
herpesvirus 1 (strain Ab4p) GN=21 PE=3 SV=1
Length = 790
Score = 276 bits (707), Expect = 4e-73, Method: Compositional matrix adjust.
Identities = 191/592 (32%), Positives = 307/592 (51%), Gaps = 51/592 (8%)
Query: 201 ATPTLFNAGTPQPQLSSCFLLCMK-DDSIEGIYDTLKKCAIISKSAGGIGLSIHNIRASG 259
ATP + G L+SC+LL + D + +++ I + GGIGLS+
Sbjct: 207 ATPIMLFGGRDCGSLASCYLLNPRVTDMNSAMLALMEEAGPILCNRGGIGLSLQRFNTPP 266
Query: 260 SYIHGTNGSSNGIVPMLQVFNDTARYVDQGGGKRKGAFAIYLEPWHADIFEFLDLRKNQG 319
G S G++ +L++ + ++ G +R +Y EPWHADI L++R
Sbjct: 267 K-----EGCSRGVMALLKLIDSMTMAINSDG-ERPTGVCVYFEPWHADIRAILNMRGMLA 320
Query: 320 KEE-CRARDLFYALWVPDLFMERVRD--DGK----WSLFCPSDASGLADSWGIEFEHLYS 372
++E R ++F +W PDLF +R + DG+ W+LF AS L +G EFE Y
Sbjct: 321 RDETVRCDNIFACMWTPDLFFDRYQRYLDGESGVMWTLF-DDTASHLCHMYGKEFEEEYE 379
Query: 373 QYEEEGRAKMVISARKLWFEILNSQIETGTPYMLFKDSCNRKS--NQQNLGTIKSSNLCT 430
+ E+ G I + + F I+ S + TG+P+++FKD+CN+ + + G I SNLCT
Sbjct: 380 RLEQCGFGVDSIPIQDMAFIIVRSAVMTGSPFLMFKDACNKHYHFDLRRKGAIMGSNLCT 439
Query: 431 EIVEFSSPEETAVCNLASIALPRYV-----REKGVPVQSNVSKLVGSRDSKNRLFDFERL 485
EI++ + + VCNLASI LP+ + GVP FDF L
Sbjct: 440 EIIQHADETQNGVCNLASINLPKCLAIPPPHTAGVPY-----------------FDFAAL 482
Query: 486 AEVTKIITENLNKIIDVNHYPIETTRRSNLRHRPIGIGIQGLADTFILLGLPFESPEAQQ 545
T +N ++ YP ++R +R +G+GIQGL F++L L SPEA+Q
Sbjct: 483 GRAAATATIFVNSMMRAGTYPTVKSQRGVDENRSLGLGIQGLHTAFLMLDLDMASPEARQ 542
Query: 546 LNKDIFETIYYHALKASAELA-VKDGPYETYFGSPMSKGILQVDMW-NITPSDRWDWSSL 603
LNK I E + +++KASA L + P++ + S S G L D + +T ++R W L
Sbjct: 543 LNKQIAERLLLNSMKASATLCRLGMKPFKGFEDSKYSLGELPFDSYPGVTLANRNAWRRL 602
Query: 604 REMISKNGVRNSLLVAPMPTASTSQILGNNECFEPYTSNIYTRRVLSGEFIVVNKHLLKD 663
R I ++G+ NS VA MPT S+SQ+ ++E F P +N++++ +GE + N L++
Sbjct: 603 RTEIKQHGLYNSQFVAYMPTVSSSQVTESSEGFSPVYTNLFSKVTATGEVLRPNLLLMRT 662
Query: 664 LTEL----GLWSHALKTKIIYENGSVSKISEIP-EELKAIYKTVWEIKQKTLVDMAADRG 718
+ + AL T + + V ++P + +KT +E Q+TL+DM ADR
Sbjct: 663 IRSIFPRECARLQALSTLEMAQWSVVGAFGDLPVGHPLSKFKTAFEYDQRTLIDMCADRA 722
Query: 719 CYIDQSQSLNIHMEQPDHGKL-----TSLHFYAWSKGMKTGMYYLRTRAAAD 765
++DQSQS+++ + +P GKL SL +A+ +G+KTGMYY + + A +
Sbjct: 723 PFVDQSQSMSLFITEPADGKLPASKIMSLLVHAYKRGLKTGMYYCKIKKATN 774
>sp|P50643|RIR1_SUHVK Ribonucleoside-diphosphate reductase large subunit OS=Suid
herpesvirus 1 (strain Kaplan) GN=RR1 PE=3 SV=1
Length = 835
Score = 271 bits (692), Expect = 2e-71, Method: Compositional matrix adjust.
Identities = 182/602 (30%), Positives = 304/602 (50%), Gaps = 48/602 (7%)
Query: 190 YHLMSQHWFTHATPTLFNAGTPQPQLSSCFLL-CMKDDSIEGIYDTLKKCAIISKSAGGI 248
+ ++ ATP + AG + L+SC+LL + + E + + A I GG+
Sbjct: 250 FRALATQAIVPATPLMLFAGRARGSLASCYLLNPLPRTTEEAVRAITDEVAPILLRRGGV 309
Query: 249 GLSIHNIRASGSYIHGTNGSSNGIVPMLQVFNDTARYVDQGGGKRKGAFAIYLEPWHADI 308
GLS+ + + S + GI+ +L+ + ++ +R +Y+EPWHAD+
Sbjct: 310 GLSLQSFNRTPS-----GDCTRGIMAVLKALDSMTAAINSDS-ERPTGVCVYVEPWHADV 363
Query: 309 FEFLDLRKNQGKEEC-RARDLFYALWVPDLFMERVRD--DG----KWSLFCPSDASGLAD 361
L++R +E R ++F LW PDLF +R + DG KW+LF AS LA
Sbjct: 364 RAVLNMRGMLAADESLRCDNIFSCLWTPDLFFQRYQRHLDGERAVKWTLF-DDRASHLAS 422
Query: 362 SWGIEFEHLYSQYEEEGRAKMVISARKLWFEILNSQIETGTPYMLFKDSCNRKSNQQNLG 421
G +F Y + E G + + + F I+ S + TG+P+++ KD+CNR + G
Sbjct: 423 LHGPDFAREYERLERLGLGVESLPIQDMAFLIVRSAVMTGSPFLMMKDACNRHFHTDTRG 482
Query: 422 T-IKSSNLCTEIVEFSSPEETAVCNLASIALPRYVREKGVPVQSNVSKLVGSRDSKNRLF 480
+ +SNLCTEIV+ ++P E VCNLAS+ LP + L G F
Sbjct: 483 AALATSNLCTEIVQRATPGENGVCNLASVNLP--------------ACLAGG------AF 522
Query: 481 DFERLAEVTKIITENLNKIIDVNHYPIETTRRSNLRHRPIGIGIQGLADTFILLGLPFES 540
DF L ++ +N ++ + +YP + R R +GIG+QGL T + L +
Sbjct: 523 DFAALRRAARVAAVFVNAMMRIGNYPTGASVEGVRRSRSLGIGLQGLHTTVLALDMDMAD 582
Query: 541 PEAQQLNKDIFETIYYHALKASAELAVKD-GPYETYFGSPMSKGILQVDMW-NITPSDRW 598
P A++LN I E + Y + AS EL + P++ + S ++G++ D + ++ +
Sbjct: 583 PAARRLNAAIAEELLYGVMDASVELCERGLRPFDGFEHSRYARGVMPFDAYERVSLREPM 642
Query: 599 DWSSLREMISKNGVRNSLLVAPMPTASTSQILGNNECFEPYTSNIYTRRVLSGEFIVVNK 658
W +LR I+++GV N+ VA MPT S+SQ+ ++E F P +N++++ +SGE + N
Sbjct: 643 RWDALRVRIAEHGVYNAQFVALMPTVSSSQVTESSEGFSPTFTNMFSKVTISGELLRPNL 702
Query: 659 HLLKDLTELGLWSHALKTKIIYENGSVSKISEIPEELK-----AIYKTVWEIKQKTLVDM 713
L++ L L A + + + ++ EL A +KT +E Q+ L+DM
Sbjct: 703 PLMETLRRLFPRECARRDAVARLERAQWSVAAAFGELPAGHPLAKFKTAFEYDQELLIDM 762
Query: 714 AADRGCYIDQSQSLNIHMEQPDHGKLTS-----LHFYAWSKGMKTGMYYLRTRAAADAIK 768
ADR ++D SQS+++ + +P GKL + L A++ G+KTGMYY + R A +
Sbjct: 763 CADRAPFVDHSQSMSLFLTEPADGKLHASRVMGLLMRAYNLGLKTGMYYCKIRKATNNGV 822
Query: 769 FT 770
FT
Sbjct: 823 FT 824
>sp|P08543|RIR1_HHV11 Ribonucleoside-diphosphate reductase large subunit OS=Human
herpesvirus 1 (strain 17) GN=UL39 PE=3 SV=2
Length = 1137
Score = 270 bits (689), Expect = 4e-71, Method: Compositional matrix adjust.
Identities = 193/608 (31%), Positives = 302/608 (49%), Gaps = 51/608 (8%)
Query: 190 YHLMSQHWFTHATPTLFNAGTPQPQLSSCFLLCMKDDSIEGIYDTLKK--CAIISKSAGG 247
+H + H +TP + N GT SSC+L+ + + + + AI++++ GG
Sbjct: 554 FHRLYDHQIVPSTPAMLNLGTRNYYTSSCYLVNPQATTNKATLRAITSNVSAILARN-GG 612
Query: 248 IGLSIHNIRASGSYIHGTNGSSNGIVPMLQVFNDTARYVDQGGGKRKGAFAIYLEPWHAD 307
IGL + SG + ++P L+V + ++ + GA +YLEPWH D
Sbjct: 613 IGLCVQAFNDSGP-------GTASVMPALKVLDSLVAAHNKESARPTGA-CVYLEPWHTD 664
Query: 308 IFEFLDLRKN-QGKEECRARDLFYALWVPDLFMERV--RDDGK----WSLFCPSDASGLA 360
+ L ++ G+E R ++F ALW+PDLF +R+ DG+ W+LF + LA
Sbjct: 665 VRAVLRMKGVLAGEEAQRCDNIFSALWMPDLFFKRLIRHLDGEKNVTWTLFDRDTSMSLA 724
Query: 361 DSWGIEFEHLYSQYEEEGRAKMVISARKLWFEILNSQIETGTPYMLFKDSCNRKSNQQNL 420
D G EFE LY E G + I ++L + I+ S TG+P+++FKD+ NR
Sbjct: 725 DFHGEEFEKLYQHLEVMGFGEQ-IPIQELAYGIVRSAATTGSPFVMFKDAVNRHYIYDTQ 783
Query: 421 GT-IKSSNLCTEIVEFSSPEETAVCNLASIALPRYVREKGVPVQSNVSKLVGSRDSKNRL 479
G I SNLCTEIV +S + VCNL S+ L R V SR +
Sbjct: 784 GAAIAGSNLCTEIVHPASKRSSGVCNLGSVNLARCV----------------SRQT---- 823
Query: 480 FDFERLAEVTKIITENLNKIIDVNHYPIETTRRSNLRHRPIGIGIQGLADTFILLGLPFE 539
FDF RL + + +N +ID P R N R +GIG+QGL + LGL E
Sbjct: 824 FDFGRLRDAVQACVLMVNIMIDSTLQPTPQCTRGNDNLRSMGIGMQGLHTACLKLGLDLE 883
Query: 540 SPEAQQLNKDIFETIYYHALKASAELAVKDG-PYETYFGSPMSKGILQVDMW-NITPSDR 597
S E Q LNK I E + A+K S L V+ P+ + S G + + + P
Sbjct: 884 SAEFQDLNKHIAEVMLLSAMKTSNALCVRGARPFNHFKRSMYRAGRFHWERFPDARPRYE 943
Query: 598 WDWSSLREMISKNGVRNSLLVAPMPTASTSQILGNNECFEPYTSNIYTRRVLSGEFIVVN 657
+W LR+ + K+G+RNS VA MPTA+++QI +E F P +N++++ GE + N
Sbjct: 944 GEWEMLRQSMMKHGLRNSQFVALMPTAASAQISDVSEGFAPLFTNLFSKVTRDGETLRPN 1003
Query: 658 KHLLKDLTELGLWSHALKT--KIIYENGSVSKISEIPEELKAI--YKTVWEIKQKTLVDM 713
LLK+L L+ + + SV++ E + +KT ++ QK L+D+
Sbjct: 1004 TLLLKELERTFSGKRLLEVMDSLDAKQWSVAQALPCLEPTHPLRRFKTAFDYDQKLLIDL 1063
Query: 714 AADRGCYIDQSQSLNIHMEQPDHGKLTS-----LHFYAWSKGMKTGMYYLRTRAAADAIK 768
ADR Y+D SQS+ +++ + G L + L +A+ +G+KTGMYY + R A ++
Sbjct: 1064 CADRAPYVDHSQSMTLYVTEKADGTLPASTLVRLLVHAYKRGLKTGMYYCKVRKATNSGV 1123
Query: 769 FTVDTSVL 776
F D +++
Sbjct: 1124 FGGDDNIV 1131
>sp|P89462|RIR1_HHV2H Ribonucleoside-diphosphate reductase large subunit OS=Human
herpesvirus 2 (strain HG52) GN=UL39 PE=3 SV=1
Length = 1142
Score = 266 bits (679), Expect = 7e-70, Method: Compositional matrix adjust.
Identities = 188/612 (30%), Positives = 305/612 (49%), Gaps = 59/612 (9%)
Query: 190 YHLMSQHWFTHATPTLFNAGTPQPQLSSCFLLCMKDDSIEGIYDTLKK--CAIISKSAGG 247
+H + H +TP + N GT SSC+L+ + + + + AI++++ GG
Sbjct: 559 FHRLYDHQIVPSTPAMLNLGTRNYYTSSCYLVNPQATTNQATLRAITGNVSAILARN-GG 617
Query: 248 IGLSIHNIRASGSYIHGTNGSSNGIVPMLQVFNDTARYVDQGGGKRKGAFAIYLEPWHAD 307
IGL + ++ + G+++ I+P L+V + ++ + GA +YLEPWH+D
Sbjct: 618 IGLCMQ------AFNDASPGTAS-IMPALKVLDSLVAAHNKQSTRPTGA-CVYLEPWHSD 669
Query: 308 IFEFLDLRKN-QGKEECRARDLFYALWVPDLFMERV--RDDGK----WSLFCPSDASGLA 360
+ L ++ G+E R ++F ALW+PDLF +R+ DG+ WSLF + LA
Sbjct: 670 VRAVLRMKGVLAGEEAQRCDNIFSALWMPDLFFKRLIRHLDGEKNVTWSLFDRDTSMSLA 729
Query: 361 DSWGIEFEHLYSQYEEEGRAKMVISARKLWFEILNSQIETGTPYMLFKDSCNRKSNQQNL 420
D G EFE LY E G + I + L + I+ S TG+P+++FKD+ NR
Sbjct: 730 DFHGEEFEKLYEHLEAMGFGE-TIPIQDLAYAIVRSAATTGSPFIMFKDAVNRHYIYDTQ 788
Query: 421 GT-IKSSNLCTEIVEFSSPEETAVCNLASIALPRYVREKGVPVQSNVSKLVGSRDSKNRL 479
G I SNLCTEIV +S + VCNL S+ L R V +
Sbjct: 789 GAAIAGSNLCTEIVHPASKRSSGVCNLGSVNLARCV--------------------SRQT 828
Query: 480 FDFERLAEVTKIITENLNKIIDVNHYPIETTRRSNLRHRPIGIGIQGLADTFILLGLPFE 539
FDF RL + + +N +ID P R N R +GIG+QGL + +GL E
Sbjct: 829 FDFGRLRDAVQACVLMVNIMIDSTLQPTPQCTRGNDNLRSMGIGMQGLHTACLKMGLDLE 888
Query: 540 SPEAQQLNKDIFETIYYHALKASAELAVKDG-PYETYFGSPMSKGILQVDMW-NITPSDR 597
S E + LN I E + A+K S L V+ P+ + S G + + N +P
Sbjct: 889 SAEFRDLNTHIAEVMLLAAMKTSNALCVRGARPFSHFKRSMYRAGRFHWERFSNASPRYE 948
Query: 598 WDWSSLREMISKNGVRNSLLVAPMPTASTSQILGNNECFEPYTSNIYTRRVLSGEFIVVN 657
+W LR+ + K+G+RNS +A MPTA+++QI +E F P +N++++ GE + N
Sbjct: 949 GEWEMLRQSMMKHGLRNSQFIALMPTAASAQISDVSEGFAPLFTNLFSKVTRDGETLRPN 1008
Query: 658 KHLLKDLTELGLWSHALKTKIIYENGSVSKISEIPEELKAI--------YKTVWEIKQKT 709
LLK+L + K + +G +K + + L + +KT ++ Q+
Sbjct: 1009 TLLLKELER----TFGGKRLLDAMDGLEAKQWSVAQALPCLDPAHPLRRFKTAFDYDQEL 1064
Query: 710 LVDMAADRGCYIDQSQSLNIHMEQPDHGKLTS-----LHFYAWSKGMKTGMYYLRTRAAA 764
L+D+ ADR Y+D SQS+ +++ + G L + L +A+ +G+KTGMYY + R A
Sbjct: 1065 LIDLCADRAPYVDHSQSMTLYVTEKADGTLPASTLVRLLVHAYKRGLKTGMYYCKVRKAT 1124
Query: 765 DAIKFTVDTSVL 776
++ F D +++
Sbjct: 1125 NSGVFAGDDNIV 1136
>sp|Q77MS1|RIR1_GAHVM Ribonucleoside-diphosphate reductase large subunit OS=Gallid
herpesvirus 2 (strain Chicken/Md5/ATCC VR-987) GN=MDV052
PE=3 SV=1
Length = 822
Score = 264 bits (675), Expect = 2e-69, Method: Compositional matrix adjust.
Identities = 192/616 (31%), Positives = 300/616 (48%), Gaps = 62/616 (10%)
Query: 185 SALKTYHL-MSQHWFTHATPTLFNAGTPQPQLSSCFLLCMKDDSIEGIYDTLKKCAIISK 243
+ T+ L ++ F +TP + G +SC+L+ D DTLK AI
Sbjct: 231 TTFTTFFLALANQLFVPSTPCMLFLGREGTSTASCYLM---DPRTNNTQDTLK--AITED 285
Query: 244 ------SAGGIGLSIHNIRASGSYIHGTNGSSNGIVPMLQVFNDTARYVDQGGGKRKGAF 297
+ GGIG+S+ ++ +G + G++ +++V D+ R
Sbjct: 286 VVPHLLARGGIGISLQHL--NGKF---------GLMHVMKVL-DSLVMAANVNESRPTGI 333
Query: 298 AIYLEPWHADIFEFLDLRKNQGKEECRARD-LFYALWVPDLFMERV------RDDGKWSL 350
+YLEPWHADI L++R EE R D +F ALW DL +R + W+L
Sbjct: 334 CVYLEPWHADIMSALNMRGMVAAEESRRCDNVFLALWSCDLLFKRYLRHVNGEKNVIWTL 393
Query: 351 FCPSDASGLADSWGIEFEHLYSQYEEEGRAKMVISARKLWFEILNSQIETGTPYMLFKDS 410
F S AS L EFE Y + E EG I R + F I+ S TG+P++LFKD+
Sbjct: 394 F-DSRASILTKLHSEEFEKEYERLESEGLGVASIPIRDMMFAIIKSAASTGSPFILFKDA 452
Query: 411 CNRKSNQQNLG-TIKSSNLCTEIVEFSSPEETAVCNLASIALPRYVREKGVPVQSNVSKL 469
CNR G I SNLCTEI++ + VC+LASI L R VR N+
Sbjct: 453 CNRHYITNTQGDAIAGSNLCTEIIQKTDANTNGVCSLASINLARCVR--------NIDG- 503
Query: 470 VGSRDSKNRLFDFERLAEVTKIITENLNKIIDVNHYPIETTRRSNLRHRPIGIGIQGLAD 529
NR FDF+ L ++ T +N I++ + P E + R+R +GIG+QG
Sbjct: 504 -------NRQFDFDALRYAVRLATVFVNAIMEGSDVPTEKSHSGRERNRSMGIGVQGFHT 556
Query: 530 TFILLGLPFESPEAQQLNKDIFETIYYHALKASAELAVKD-GPYETYFGSPMSKGILQVD 588
F+ +GL A+ LNK IFE + A+ S E + P+ + S ++G L D
Sbjct: 557 AFLSMGLDLCDERARSLNKLIFEFMLLEAMTVSCEFCERGLPPFADFSNSYYARGRLHFD 616
Query: 589 MW-NITPSDRWDWSSLREMISKNGVRNSLLVAPMPTASTSQILGNNECFEPYTSNIYTRR 647
W N+ + +W+ LR+ I G+ N+ +A MPTA+++Q+ +E F P SN++++
Sbjct: 617 GWANVELAAVEEWNMLRDRIVSAGLYNAQFIALMPTAASAQVTEVSEGFSPLFSNMFSKV 676
Query: 648 VLSGEFIVVNKHLLKDLTELGL--WSHALKTKIIYENGS---VSKISEIPEELKAI-YKT 701
+GE + N L+++L + L + L T E+ + + + PE + YKT
Sbjct: 677 TSTGELLRPNIQLMEELRTIYLDNENQRLATIAALESANWNIQTALGNKPECHSLLKYKT 736
Query: 702 VWEIKQKTLVDMAADRGCYIDQSQSLNIHMEQPDHGKLTS-----LHFYAWSKGMKTGMY 756
++ Q L+D+ +DR ++DQSQS+ + + + G L + L +A+ G+KTGMY
Sbjct: 737 AFDYDQALLIDLCSDRAPFVDQSQSMTLFITETADGTLLASRVMNLLLHAYKAGLKTGMY 796
Query: 757 YLRTRAAADAIKFTVD 772
Y + R A +A F D
Sbjct: 797 YCKIRKATNAGVFCGD 812
>sp|P74240|RIR1_SYNY3 Ribonucleoside-diphosphate reductase subunit alpha OS=Synechocystis
sp. (strain PCC 6803 / Kazusa) GN=nrdA PE=3 SV=1
Length = 767
Score = 264 bits (674), Expect = 3e-69, Method: Compositional matrix adjust.
Identities = 195/673 (28%), Positives = 316/673 (46%), Gaps = 65/673 (9%)
Query: 1 MYVIKRDGRKEPVRFDKITARLKKLSYGLSKEHCDPVLVAQKVCAGVYKGVTTTQL-DEL 59
+ VI+RDG P+ KI A + GL + + + + + +G++T ++ D L
Sbjct: 31 IQVIRRDGSSTPLNIGKIRAVVDWACLGL---EVNSIALEAGLTTRLREGISTREIQDNL 87
Query: 60 AAETAAAMTVNHPDYALLAGRVAVSNLHKITKNSFSETIKDMYNYYNKRSGKKASLVADD 119
+ + N PD+ +AGR+ V +L K T ++ Y Y + + +
Sbjct: 88 ISCALEMCSPNEPDWRYVAGRLHVWSLWKDT------LVRRGYQYGQYLRTVQTKVTNGE 141
Query: 120 VYEIIM-------KNAACLDGAIIYDRDFDFDYFGFKTLERSYLLKMDSRVVERPQHMLM 172
I+ + A C I D D D+DY G L YLL + L+
Sbjct: 142 YDSRILTYSEGELQEAGCW---INSDWDTDYDYAGAVLLTSRYLLPNELPQEALLTCALL 198
Query: 173 RVSVGIHKDDTDSALKTYHLMSQHWFTHATPTLFNAGTPQPQLSSCFLLCMKDDSIEGIY 232
SV A + Y ++ + ATP L N P L+SCF++ M+D+ +E I+
Sbjct: 199 LASVEAPDRRLQWARRFYESIAARRISLATPILANLRVPGGSLTSCFIVAMEDN-LESIF 257
Query: 233 DTLKKCAIISKSAGGIGLSIHNIRASGSYIHGTNGSSNGIVPMLQVFNDTARYVDQGGGK 292
+ A ISK+ GG+G+++ IRA+GS++ G +S G++P ++ NDTA V+Q GG+
Sbjct: 258 GEITNAARISKNGGGVGVNVSRIRATGSWVMGKPNASGGVIPWTKLLNDTAIAVNQ-GGR 316
Query: 293 RKGAFAIYLEPWHADIFEFLDLRKNQGKEECRARDLFYALWVPDLFMERVRDDGKWSLFC 352
R GA + L+ WH D+ EFL+++ G + +A D+F L +PD FM RV + W+L
Sbjct: 317 RAGAVTVGLDVWHLDVPEFLEMQAENGDQRRKAYDIFPQLILPDEFMRRVINKEDWTLVD 376
Query: 353 PSDAS-----GLADSWGIEFEHLYSQYEEEGRAKMV----ISARKLWFEILNSQIETGTP 403
P + LA+ WG +FE Y + E + I+AR+L+ +I+ +Q+ETG P
Sbjct: 377 PYEVREKMGIELAELWGEQFEGAYREIESNLDTTITLYKRINARELFKQIMRTQVETGMP 436
Query: 404 YMLFKDSCNRKSNQQNLGTIKSSNLCTEIVEFSSPEETA-VCNLASIALPRYVREKGVPV 462
Y+ FKD+ N+ + ++LG I +NLC E +P + A CNL S+ L
Sbjct: 437 YLSFKDTINKANPNKHLGYIPGTNLCCESFSNVTPGQDAHCCNLVSLNLAN--------- 487
Query: 463 QSNVSKLVGSRDSKNRLFDFERLAEVTKIITENLNKIIDVNHYPIETTRRSNLRHRPIGI 522
D + +A V++I L+ I++ P + N ++R IG+
Sbjct: 488 -----------------LDLQDIAGVSQIAVRMLDNTIELTAPPFADAKSHNNKYRTIGV 530
Query: 523 GIQGLADTFILLGLPFESPEAQQLNKDIFETIYYHALKASAELAVKDGPYETYFGSPMSK 582
G GLAD L ++ E +N+ +FE I Y ++S ELA + G Y + GS K
Sbjct: 531 GAMGLADWLAKRRLNYD--ELADINR-LFEEIGYWCTQSSMELAKERGAYPAFPGSDWQK 587
Query: 583 GIL----QVDMWNITPSDRWDWSSLREMISKNGVRNSLLVAPMPTASTSQILGNNECFEP 638
G+L V + + W L I +G+RNS + A P S+S + G P
Sbjct: 588 GLLIGSKPVSWFQANAAKPERWEKLSNDIQTHGIRNSHITAIAPNTSSSLVQGCTASILP 647
Query: 639 YTSNIYTRRVLSG 651
S + + G
Sbjct: 648 VYSRFFYDKWAKG 660
>sp|P09853|RIR1_HHV23 Ribonucleoside-diphosphate reductase large subunit OS=Human
herpesvirus 2 (strain 333) PE=3 SV=2
Length = 1144
Score = 263 bits (673), Expect = 3e-69, Method: Compositional matrix adjust.
Identities = 188/612 (30%), Positives = 304/612 (49%), Gaps = 59/612 (9%)
Query: 190 YHLMSQHWFTHATPTLFNAGTPQPQLSSCFLLCMKDDSIEGIYDTLKK--CAIISKSAGG 247
+H + H +TP + N GT SSC+L+ + + + + AI++++ GG
Sbjct: 561 FHRLYDHQIVPSTPAMLNLGTRNYYTSSCYLVNPQATTNQATLRAITGNVSAILARN-GG 619
Query: 248 IGLSIHNIRASGSYIHGTNGSSNGIVPMLQVFNDTARYVDQGGGKRKGAFAIYLEPWHAD 307
IGL + ++ + G+++ I+P L+V + ++ + GA +YLEPWH+D
Sbjct: 620 IGLCMQ------AFNDASPGTAS-IMPALKVLDSLVAAHNKQSTRPTGA-CVYLEPWHSD 671
Query: 308 IFEFLDLRKN-QGKEECRARDLFYALWVPDLFMERV--RDDGK----WSLFCPSDASGLA 360
+ L ++ G+E R ++F ALW+PDLF +R+ DG+ WSLF + LA
Sbjct: 672 VRAVLRMKGVLAGEEAQRCDNIFSALWMPDLFFKRLIRHLDGEKNVTWSLFDRDTSMSLA 731
Query: 361 DSWGIEFEHLYSQYEEEGRAKMVISARKLWFEILNSQIETGTPYMLFKDSCNRKSNQQNL 420
D G EFE LY E G + I + L + I+ S TG+P+++FKD+ NR
Sbjct: 732 DFHGEEFEKLYEHLEAMGFGE-TIPIQDLAYAIVRSAATTGSPFIMFKDAVNRHYIYDTQ 790
Query: 421 GT-IKSSNLCTEIVEFSSPEETAVCNLASIALPRYVREKGVPVQSNVSKLVGSRDSKNRL 479
G I SNLCTEIV SS + VCNL S+ L R V R
Sbjct: 791 GAAIAGSNLCTEIVHPSSKRSSGVCNLGSVNLARCV--------------------SRRT 830
Query: 480 FDFERLAEVTKIITENLNKIIDVNHYPIETTRRSNLRHRPIGIGIQGLADTFILLGLPFE 539
FDF L + + +N +ID P R + R +GIG+QGL + +GL E
Sbjct: 831 FDFGMLRDAVQACVLMVNIMIDSTLQPTPQCARGHDNLRSMGIGMQGLHTACLKMGLDLE 890
Query: 540 SPEAQQLNKDIFETIYYHALKASAELAVKDG-PYETYFGSPMSKGILQVDMW-NITPSDR 597
S E + LN I E + A+K S L V+ P+ + S G + + N +P
Sbjct: 891 SAEFRDLNTHIAEVMLLAAMKTSNALCVRGARPFSHFKRSMYRAGRFHWERFSNASPRYE 950
Query: 598 WDWSSLREMISKNGVRNSLLVAPMPTASTSQILGNNECFEPYTSNIYTRRVLSGEFIVVN 657
+W LR+ + K+G+RNS +A MPTA+++QI +E F P +N++++ GE + N
Sbjct: 951 GEWEMLRQSMMKHGLRNSQFIALMPTAASAQISDVSEGFAPLFTNLFSKVTRDGETLRPN 1010
Query: 658 KHLLKDLTELGLWSHALKTKIIYENGSVSKISEIPEELKAI--------YKTVWEIKQKT 709
LLK+L + K + +G +K + + L + +KT ++ Q+
Sbjct: 1011 TLLLKELER----TFGGKRLLDAMDGLEAKQWSVAQALPCLDPAHPLRRFKTAFDYDQEL 1066
Query: 710 LVDMAADRGCYIDQSQSLNIHMEQPDHGKLTS-----LHFYAWSKGMKTGMYYLRTRAAA 764
L+D+ ADR Y+D SQS+ +++ + G L + L +A+ +G+KTGMYY + R A
Sbjct: 1067 LIDLCADRAPYVDHSQSMTLYVTEKADGTLPASTLVRLLVHAYKRGLKTGMYYCKVRKAT 1126
Query: 765 DAIKFTVDTSVL 776
++ F D +++
Sbjct: 1127 NSGVFAGDDNIV 1138
>sp|Q6UDJ2|RIR1_PSHV1 Ribonucleoside-diphosphate reductase large subunit OS=Psittacid
herpesvirus 1 (isolate Amazon parrot/-/97-0001/1997)
GN=UL39 PE=3 SV=1
Length = 811
Score = 259 bits (663), Expect = 5e-68, Method: Compositional matrix adjust.
Identities = 178/582 (30%), Positives = 281/582 (48%), Gaps = 40/582 (6%)
Query: 202 TPTLFNAGTPQPQLSSCFLLCMKDDSIEGIYDTLKKCAI-ISKSAGGIGLSIHNIRASGS 260
TP + AGT +SCFLL ++ + ++ + I + S GGIGL +
Sbjct: 231 TPVMLFAGTESRSYASCFLLDVRGRHTRDVLTSIAEEIIPVMHSHGGIGLYM-------D 283
Query: 261 YIHGTNGSSNGIVPMLQVFNDTARYVDQGGGKRKGAFAIYLEPWHADIFEFLDLRKN-QG 319
+ +S+G++ L+ D+ R +Y+EPWH DI + L R G
Sbjct: 284 CDSNWDDNSSGMMLALKAL-DSIIAASNAVSARPSGLCVYVEPWHRDIMKILRCRGVLAG 342
Query: 320 KEECRARDLFYALWVPDLFMERVRDDGKWSLFCPSDASGLADSWGIEFEHLYSQYEEEGR 379
EE R + F+ALW+PDLFM+R +G W+LF A+ L+D +G EFE Y E +
Sbjct: 343 NEETRCDNTFFALWMPDLFMKRFEANGTWTLF-DGRAAHLSDLYGEEFEKEYELLERKNV 401
Query: 380 AKMVISARKLWFEILNSQIETGTPYMLFKDSCNRKSNQQNLG-TIKSSNLCTEIVEFSSP 438
AR + F ++ S + TGTP+++FK + NR G +K SNLCTEIV +
Sbjct: 402 GIATYPARDVMFALIKSAVSTGTPFVMFKHAVNRNYFFDMAGRAMKCSNLCTEIVHMTDD 461
Query: 439 EETAVCNLASIALPRYV-REKGVPVQSNVSKLVGSRDSKNRLFDFERLAEVTKIITENLN 497
E VCNL S+ L +V R +P + FD+ + + T +N
Sbjct: 462 ESVGVCNLTSLNLAAFVTRRNALPGTPPIGT-----------FDYSSFRDACAVATVFIN 510
Query: 498 KIIDVNHYPIETTRRSNLRHRPIGIGIQGLADTFILLGLPFESPEAQQLNKDIFETIYYH 557
++ +++ PI+ N R R IGIG+QG +L G +S EA + N +FE +
Sbjct: 511 ALMSLSNLPIKRATTGNERLRSIGIGVQGFHTACLLQGFGLDSVEACRFNGKLFEALALT 570
Query: 558 ALKASAELA-VKDGPYETYFGSPMSKGILQVDMWNITPSDRWDWSSLREMISKNGVRNSL 616
+ S + + P+ + S +KG L +D W W LRE I G+ N
Sbjct: 571 TFQTSCRICELGMNPFRGFSESKYAKGWLHMDGWPARHLYFDGWDRLRENIKAYGLYNCQ 630
Query: 617 LVAPMPTASTSQILGNNECFEPYTSNIYTRRVLSGEFIVVNKHLLKDLTELGLWSHALKT 676
LVA MPTAS+SQ+ +E P NI+++ +GE I +N L++ + L+ + +
Sbjct: 631 LVALMPTASSSQLTEVSEGIHPVFGNIFSKITTTGEDIQLNVALMETIE--CLYPNKAER 688
Query: 677 KIIYENGSVSKIS-------EIPEELKAI-YKTVWEIKQKTLVDMAADRGCYIDQSQSLN 728
+ I E +K S +P + + T +E Q+ L+ ++ADR ++D SQS
Sbjct: 689 RDILERLHKNKWSTRGAFGAALPSQHPLTKFDTAFEADQEHLLRLSADRAPFVDHSQSTT 748
Query: 729 IHMEQPDHG-----KLTSLHFYAWSKGMKTGMYYLRTRAAAD 765
+++ + D G ++ L A+ G+KTGMYY + R A D
Sbjct: 749 LYVVEEDDGAVRASRVAHLLTTAFKYGLKTGMYYCKVRKATD 790
>sp|Q4JQV6|RIR1_VZVO Ribonucleoside-diphosphate reductase large subunit
OS=Varicella-zoster virus (strain Oka vaccine) GN=ORF19
PE=3 SV=1
Length = 775
Score = 246 bits (627), Expect = 8e-64, Method: Compositional matrix adjust.
Identities = 183/612 (29%), Positives = 295/612 (48%), Gaps = 54/612 (8%)
Query: 183 TDSALKTYHLMSQHWFTHATPTLFNAGTPQPQLSSCFLLCMKDDSI---EGIYDTLKKCA 239
TD + ++ ATP + G +SC+L M +SI +
Sbjct: 181 TDVCRVFFTALACQKIVPATPVMMFLGRETGATASCYL--MDPESITVGRAVRAITGDVG 238
Query: 240 IISKSAGGIGLSIHNIRASGSYIHGTNGSSNGIVPMLQVFNDTARYVDQGGGKRKGAFAI 299
+ +S GG+G+S+ ++ + T + G++ +L++ + ++ +R +
Sbjct: 239 TVLQSRGGVGISLQSLN-----LIPTENQTKGLLAVLKLLDCMVMAINSDC-ERPTGVCV 292
Query: 300 YLEPWHADIFEFLDLRKNQGKEEC-RARDLFYALWVPDLFMERV------RDDGKWSLFC 352
Y+EPWH D+ L R ++E R ++F LW PDLF ER + +W+LF
Sbjct: 293 YIEPWHVDLQTVLATRGMLVRDEIFRCDNIFCCLWTPDLFFERYLSYLKGASNVQWTLF- 351
Query: 353 PSDASGLADSWGIEFEHLYSQYEEEGRAKMVISARKLWFEILNSQIETGTPYMLFKDSCN 412
+ A L G F Y + E EG + + + F I+ S TG+P+++FKD+CN
Sbjct: 352 DNRADILRTLHGEAFTSTYLRLEREGLGVSSVPIQDIAFTIIRSAAVTGSPFLMFKDACN 411
Query: 413 RKSNQQNLG-TIKSSNLCTEIVEFSSPEETAVCNLASIALPRYVREKGVPVQSNVSKLVG 471
R + G I SNLCTEIV+ + + VCNLASI L + KG PV N++
Sbjct: 412 RNYHMNTQGNAITGSNLCTEIVQKADAHQHGVCNLASINLTTCL-SKG-PVSFNLN---- 465
Query: 472 SRDSKNRLFDFERLAEVTKIITENLNKIIDVNHYPIETTRRSNLRHRPIGIGIQGLADTF 531
D + A T I LN ++ ++P + + + +R +GIGIQGL T
Sbjct: 466 ---------DLQLTARTTVIF---LNGVLAAGNFPCKKSCKGVKNNRSLGIGIQGLHTTC 513
Query: 532 ILLGLPFESPEAQQLNKDIFETIYYHALKASAELAVKDG--PYETYFGSPMSKGILQVDM 589
+ LG S A++LN I E + Y +K S E+ G P++ + S +KG L D
Sbjct: 514 LRLGFDLTSQPARRLNVQIAELMLYETMKTSMEMCKIGGLAPFKGFTESKYAKGWLHQDG 573
Query: 590 WNITPSDRWDWSSLREMISKNGVRNSLLVAPMPTASTSQILGNNECFEPYTSNIYTRRVL 649
++ W +LR+ I G+ NS +A MPT S++Q+ +E F P +N++++
Sbjct: 574 FSTISYLDLPWCTLRDDICAYGLYNSQFLALMPTVSSAQVTECSEGFSPIYNNMFSKVTT 633
Query: 650 SGEFIVVNKHLLKDLTEL-GLWSHALKTKIIYENG------SVSKISEIPEELKAIYKTV 702
SGE + N L+ +L ++ L+ I E S +S LK YKT
Sbjct: 634 SGELLRPNLDLMDELRDMYSCEEKRLEVINILEKNQWSVIRSFGCLSNSHPLLK--YKTA 691
Query: 703 WEIKQKTLVDMAADRGCYIDQSQSLNIHMEQPDHG-----KLTSLHFYAWSKGMKTGMYY 757
+E +Q+ LVDM A+R +IDQSQS+ + +E+ G K+ +L A+ G+KTGMYY
Sbjct: 692 FEYEQEDLVDMCAERAPFIDQSQSMTLFIEERPDGTIPASKIMNLLIRAYKAGLKTGMYY 751
Query: 758 LRTRAAADAIKF 769
+ R A ++ F
Sbjct: 752 CKIRKATNSGLF 763
>sp|P09248|RIR1_VZVD Ribonucleoside-diphosphate reductase large subunit
OS=Varicella-zoster virus (strain Dumas) GN=ORF19 PE=3
SV=1
Length = 775
Score = 246 bits (627), Expect = 8e-64, Method: Compositional matrix adjust.
Identities = 183/612 (29%), Positives = 295/612 (48%), Gaps = 54/612 (8%)
Query: 183 TDSALKTYHLMSQHWFTHATPTLFNAGTPQPQLSSCFLLCMKDDSI---EGIYDTLKKCA 239
TD + ++ ATP + G +SC+L M +SI +
Sbjct: 181 TDVCRVFFTALACQKIVPATPVMMFLGRETGATASCYL--MDPESITVGRAVRAITGDVG 238
Query: 240 IISKSAGGIGLSIHNIRASGSYIHGTNGSSNGIVPMLQVFNDTARYVDQGGGKRKGAFAI 299
+ +S GG+G+S+ ++ + T + G++ +L++ + ++ +R +
Sbjct: 239 TVLQSRGGVGISLQSLN-----LIPTENQTKGLLAVLKLLDCMVMAINSDC-ERPTGVCV 292
Query: 300 YLEPWHADIFEFLDLRKNQGKEEC-RARDLFYALWVPDLFMERV------RDDGKWSLFC 352
Y+EPWH D+ L R ++E R ++F LW PDLF ER + +W+LF
Sbjct: 293 YIEPWHVDLQTVLATRGMLVRDEIFRCDNIFCCLWTPDLFFERYLSYLKGASNVQWTLF- 351
Query: 353 PSDASGLADSWGIEFEHLYSQYEEEGRAKMVISARKLWFEILNSQIETGTPYMLFKDSCN 412
+ A L G F Y + E EG + + + F I+ S TG+P+++FKD+CN
Sbjct: 352 DNRADILRTLHGEAFTSTYLRLEREGLGVSSVPIQDIAFTIIRSAAVTGSPFLMFKDACN 411
Query: 413 RKSNQQNLG-TIKSSNLCTEIVEFSSPEETAVCNLASIALPRYVREKGVPVQSNVSKLVG 471
R + G I SNLCTEIV+ + + VCNLASI L + KG PV N++
Sbjct: 412 RNYHMNTQGNAITGSNLCTEIVQKADAHQHGVCNLASINLTTCL-SKG-PVSFNLN---- 465
Query: 472 SRDSKNRLFDFERLAEVTKIITENLNKIIDVNHYPIETTRRSNLRHRPIGIGIQGLADTF 531
D + A T I LN ++ ++P + + + +R +GIGIQGL T
Sbjct: 466 ---------DLQLTARTTVIF---LNGVLAAGNFPCKKSCKGVKNNRSLGIGIQGLHTTC 513
Query: 532 ILLGLPFESPEAQQLNKDIFETIYYHALKASAELAVKDG--PYETYFGSPMSKGILQVDM 589
+ LG S A++LN I E + Y +K S E+ G P++ + S +KG L D
Sbjct: 514 LRLGFDLTSQPARRLNVQIAELMLYETMKTSMEMCKIGGLAPFKGFTESKYAKGWLHQDG 573
Query: 590 WNITPSDRWDWSSLREMISKNGVRNSLLVAPMPTASTSQILGNNECFEPYTSNIYTRRVL 649
++ W +LR+ I G+ NS +A MPT S++Q+ +E F P +N++++
Sbjct: 574 FSTISYLDLPWCTLRDDICAYGLYNSQFLALMPTVSSAQVTECSEGFSPIYNNMFSKVTT 633
Query: 650 SGEFIVVNKHLLKDLTEL-GLWSHALKTKIIYENG------SVSKISEIPEELKAIYKTV 702
SGE + N L+ +L ++ L+ I E S +S LK YKT
Sbjct: 634 SGELLRPNLDLMDELRDMYSCEEKRLEVINILEKNQWSVIRSFGCLSNSHPLLK--YKTA 691
Query: 703 WEIKQKTLVDMAADRGCYIDQSQSLNIHMEQPDHG-----KLTSLHFYAWSKGMKTGMYY 757
+E +Q+ LVDM A+R +IDQSQS+ + +E+ G K+ +L A+ G+KTGMYY
Sbjct: 692 FEYEQEDLVDMCAERAPFIDQSQSMTLFIEERPDGTIPASKIMNLLIRAYKAGLKTGMYY 751
Query: 758 LRTRAAADAIKF 769
+ R A ++ F
Sbjct: 752 CKIRKATNSGLF 763
>sp|Q01037|RIR1_SHV21 Ribonucleoside-diphosphate reductase large subunit OS=Saimiriine
herpesvirus 2 (strain 11) GN=61 PE=3 SV=1
Length = 767
Score = 236 bits (603), Expect = 4e-61, Method: Compositional matrix adjust.
Identities = 195/668 (29%), Positives = 311/668 (46%), Gaps = 78/668 (11%)
Query: 176 VGIHKDDTDSALKT--------YHLMSQHWFTHATPTLFNAGTPQPQLSSCFLLCMKDDS 227
V + K D + +KT Y ++S ATP + +AG LSSCF++ D+
Sbjct: 142 VYVQKRDWNVEIKTDMQIFKYFYKVISSQLVCCATPVMRSAGVAGENLSSCFIIAPTLDT 201
Query: 228 ----IEGIYDTLKKCAIISKSAGGIGLSIHNIRASGSYIHGTNGSSNGIVPMLQVFNDTA 283
I I+ L A + S G+G+ + G IH N V + FND +
Sbjct: 202 EKSTISSIFGEL---APLLASRSGVGVDVTKFSFGGKNIHSCLKLINAQV---EFFNDKS 255
Query: 284 RYVDQGGGKRKGAFAIYLEPWHADIFEFLDLRKNQGKEECRARDLFYALWVPDLFMERVR 343
R + A Y+E WH I EFL + + + C + +F + VP LF +
Sbjct: 256 V--------RPVSVATYIEVWHCQIHEFLSAKLPENPDRCNS--IFQGVCVPSLFFKMYE 305
Query: 344 DD--GKWSLFCPSDASGLADSWGIEFEHLYSQYEEEGRAKMVISARKLWFEILNSQIETG 401
D G W LF P DA L +G+EFE Y + E + K ++ + L F ++N+ I+TG
Sbjct: 306 SDPNGLWYLFDPQDAPNLTRLYGLEFEEEYLRLVSEKKYKQSVTLKSLMFSLINTIIKTG 365
Query: 402 TPYMLFKDSCNRKSNQQNLG-TIKSSNLCTEIVEFSSPEE-TAVCNLASIALPRYVREKG 459
+PY++ K++ N+ + G I SNLC EIV+ P++ T+ CNLA++ LP+ +
Sbjct: 366 SPYVISKEAMNKHHWYETQGEAINCSNLCAEIVQ--QPKQFTSTCNLANVCLPKCLNSSN 423
Query: 460 VPVQSNVSKLVGSRDSKNRLFDFERLAEVTKIITENLNKIIDVNHYPIETTRRSNLRHRP 519
P S FDF +L + +N I ++ P + R R
Sbjct: 424 FPYTC----------SNTAQFDFSKLEYAVQAAVFIINACI-LSPSPTSSATVGQ-RERS 471
Query: 520 IGIGIQGLADTFILLGLPFESPEAQQLNKDIFETIYYHALKASAELAV--KDGPYETYFG 577
+GIG GLAD F +G + E++ L++DIFET+YY A+K S+E+ K P+ +
Sbjct: 472 MGIGCHGLADVFSEMGYGYLDLESECLDRDIFETMYYTAVKTSSEICSVGKGQPFAGFRK 531
Query: 578 SPMSKGILQVDMWNITPS--DRWDWSSLREMISKNGVRNSLLVAPMPTASTSQILGNNEC 635
S ++ G+ W+ P W L++ I K GV NS +A MPTA TSQ+ G +
Sbjct: 532 SKLAHGVFHWATWDAMPQRVPMKQWIHLQDNIKKFGVFNSQFIALMPTAGTSQLTGYTDS 591
Query: 636 FEPYTSNIYTRRVLSGEFIVVNKHLLKDLTELGLWSHALKTKIIYENGSVSKISEIPEEL 695
F PY +N+ ++ E + N LK++ L + + + G VS +PE++
Sbjct: 592 FYPYFANMSSKVSNKEEIMKPNITFLKNVKPQDLCT------VRFYGGDVSM---MPEDV 642
Query: 696 KAIYK---TVWEIKQKTLVDMAADRGCYIDQSQSLNIHMEQPDHGK---LTSLHFYAWSK 749
YK T ++ + + A+ R Y+DQSQSL + + + + L L +
Sbjct: 643 STRYKHFLTAFDYCPEAQMRRASIRAPYVDQSQSLTLFLTEENVQSAKYLKDLLLLGFRL 702
Query: 750 GMKTGMYYLRTRAAADAIKFTVDTSVLNNEKANRADNDVEANLAQVV---------CSLK 800
G+KT MYY R + ++ + +E + V A+LA+ + C L
Sbjct: 703 GLKTIMYYCRVKKTTKLLQLEC---LKLDEHTKKDAQIVLADLARELPDSHKTEDACPL- 758
Query: 801 NQEECMAC 808
+Q EC+AC
Sbjct: 759 DQSECIAC 766
>sp|P37426|RIR1_SALTY Ribonucleoside-diphosphate reductase 1 subunit alpha OS=Salmonella
typhimurium (strain LT2 / SGSC1412 / ATCC 700720)
GN=nrdA PE=3 SV=1
Length = 761
Score = 234 bits (597), Expect = 2e-60, Method: Compositional matrix adjust.
Identities = 199/702 (28%), Positives = 305/702 (43%), Gaps = 68/702 (9%)
Query: 1 MYVIKRDGRKEPVRFDKITARLKKLSYGLSKEHCDPVLVAQKVCAGVYKGVTTTQLDELA 60
+ V KRDGR E + DKI L + GL+ V + + Y G+ T+ + E
Sbjct: 5 LLVTKRDGRTERINLDKIHRVLDWAAEGLNNVSVSQVELRSHI--QFYDGIKTSDIHETI 62
Query: 61 AETAAAM-TVNHPDYALLAGRVAVSNLHKITKNSFSETIKDMYNYYNK--RSGKKASLVA 117
+ AA + + + PDY LA R+A+ +L K F +Y++ K GK + +
Sbjct: 63 IKAAADLISRDAPDYQYLAARLAIFHLRKKAFGQFEPPA--LYHHVVKMVELGKYDNHLL 120
Query: 118 DDVYEIIMKNAACLDGAIIYDRDFDFDYFGFKTLERSYLL--KMDSRVVERPQHMLMRVS 175
+D E K +D I++DRD F Y K LE YL+ ++ + E Q + + V+
Sbjct: 121 EDYTEEEFKQ---MDSFIVHDRDMTFSYAAVKQLEGKYLVQNRVTGEIYESAQFLYILVA 177
Query: 176 VGIHKD-----DTDSALKTYHLMSQHWFTHATPTLFNAGTPQPQLSSCFLL-CMKDDSIE 229
+ + D + Y +S + TP + TP Q SSC L+ C DS++
Sbjct: 178 ACLFSNYPRETRLDYVKRFYDAVSTFKISLPTPIMSGVRTPTRQFSSCVLIEC--GDSLD 235
Query: 230 GIYDTLKKCAIISKSAGGIGLSIHNIRASGSYIHGTNGSSNGIVPMLQVFNDTARYVDQG 289
I T GIG++ IRA GS I G G +P + F + QG
Sbjct: 236 SINATSSAIVKYVSQRAGIGINAGRIRALGSPIRGGEAFHTGCIPFYKHFQTAVKSCSQG 295
Query: 290 GGKRKGAFAIYLEPWHADIFEFLDLRKNQGKEECRARDLFYALWVPDLFMERVRDDGKWS 349
G R GA ++ WH ++ L L+ N+G E R R + Y + + L R+ G +
Sbjct: 296 G-VRGGAATLFYPMWHLEVESLLVLKNNRGVEGNRVRHMDYGVQINKLMYTRLLKGGDIT 354
Query: 350 LFCPSDASGLADSWGI---EFEHLYSQYE-EEGRAKMVISARKLWFEILNSQIETGTPYM 405
LF PSD GL D++ EFE LY +YE ++ K + A +L+ ++ + TG Y+
Sbjct: 355 LFSPSDVPGLYDAFFADQDEFERLYVKYEHDDSIRKQRVKAVELFSLMMQERASTGRIYI 414
Query: 406 LFKDSCNRKSN-QQNLGTIKSSNLCTEIVEFSSP--------EETAVCNLASIALPRYVR 456
D CN S + ++ SNLC EI + P E A+C L++ L
Sbjct: 415 QNVDHCNTHSPFDPVVAPVRQSNLCLEIALPTKPLNDVNDENGEIALCTLSAFNL----- 469
Query: 457 EKGVPVQSNVSKLVGSRDSKNRLFDFERLAEVTKIITENLNKIIDVNHYPIETTRRSNLR 516
+ + L E+ + L+ ++D YPI +R +
Sbjct: 470 --------------------GAIKTLDELEELAILAVRALDALLDYQDYPIPAAKRGAMG 509
Query: 517 HRPIGIGIQGLADTFILLGLPFESPEAQQLNKDIFETIYYHALKASAELAVKDGPYETYF 576
R +GIG+ A G + A L FE I Y+ LKAS ELA + G +
Sbjct: 510 RRTLGIGVINFAYWLAKNGKRYSDGSANNLTHKTFEAIQYYLLKASNELAKEQGACPWFN 569
Query: 577 GSPMSKGILQVDMWN------ITPSDRWDWSSLREMISKNGVRNSLLVAPMPTASTSQIL 630
+ +KGIL +D + + +DW LRE I +G+RNS L A MP+ ++SQI
Sbjct: 570 ETTYAKGILPIDTYKKDLDAIVNEPLHYDWEQLRESIKTHGLRNSTLSALMPSETSSQIS 629
Query: 631 GNNECFEPYTSNIYTRRVLSGEF--IVVNKHLLKDLTELGLW 670
EP + + G +V + LKD EL LW
Sbjct: 630 NATNGIEPPRGYVSIKASKDGILRQVVPDYEHLKDAYEL-LW 670
>sp|P43754|RIR1_HAEIN Ribonucleoside-diphosphate reductase subunit alpha OS=Haemophilus
influenzae (strain ATCC 51907 / DSM 11121 / KW20 / Rd)
GN=nrdA PE=3 SV=1
Length = 756
Score = 234 bits (596), Expect = 3e-60, Method: Compositional matrix adjust.
Identities = 188/668 (28%), Positives = 299/668 (44%), Gaps = 65/668 (9%)
Query: 1 MYVIKRDGRKEPVRFDKITARLKKLSYGLSKEHCDPVLVAQKVCAGVYKGVTTTQLDELA 60
+ V KRDG +E + DKI + + GL V + + Y+G+ T+ + E
Sbjct: 5 LMVTKRDGTQEQINLDKIHRVITWAAEGLDNVSVSQVELRSHI--QFYEGIRTSDIHETI 62
Query: 61 AETAAAM-TVNHPDYALLAGRVAVSNLHKITKNSFSETIKDMYNYYNK--RSGKKASLVA 117
+ AA + + + PDY LA R+A+ +L K F +Y++ K R K +
Sbjct: 63 IKAAADLISKDSPDYQYLAARLAIFHLRKKAYGHFDPP--RLYDHVKKLVRMEKYDQALL 120
Query: 118 DDVYEIIMKNAACLDGAIIYDRDFDFDYFGFKTLERSYLL--KMDSRVVERPQHMLMRVS 175
DD + +DG I + RD F Y K LE YL+ ++ + E Q + + VS
Sbjct: 121 DDY---TREEWDTMDGFIDHWRDMTFSYAAVKQLEGKYLVQNRVTGEIYESAQFLYLLVS 177
Query: 176 VGI-----HKDDTDSALKTYHLMSQHWFTHATPTLFNAGTPQPQLSSCFLL-CMKDDSIE 229
+ + D + Y S + TP + TP Q SSC L+ C DDS++
Sbjct: 178 ASLFSKYPKETRLDYVKRFYDATSTFKISLPTPIMAGVRTPTRQFSSCVLIEC--DDSLD 235
Query: 230 GIYDTLKKCAIISKSAGGIGLSIHNIRASGSYIHGTNGSSNGIVPMLQVFNDTARYVDQG 289
I T GIG++ IRA GS I G G +P + F + QG
Sbjct: 236 SINATASAIVKYVSQRAGIGINAGAIRALGSEIRGGEAFHTGCIPFYKYFQTAVKSCSQG 295
Query: 290 GGKRKGAFAIYLEPWHADIFEFLDLRKNQGKEECRARDLFYALWVPDLFMERVRDDGKWS 349
G R GA +Y WH + L L+ N+G E+ R R + Y + + L +R+ + +
Sbjct: 296 G-VRGGAATLYYPIWHLEAENLLVLKNNRGVEDNRVRHMDYGVQLNKLMYQRLIKGSEIT 354
Query: 350 LFCPSDASGLADSWGIE---FEHLYSQYEEEGRA-KMVISARKLWFEILNSQIETGTPYM 405
LF PSD GL +++ + FE LY +YE++ K + A +++ ++ + TG Y+
Sbjct: 355 LFSPSDVPGLYEAFFADQDKFEELYVKYEQDPTIRKRTVKAVEIFSLLMQERASTGRIYI 414
Query: 406 LFKDSCNRKSN-QQNLGTIKSSNLCTEIVEFSSP--------EETAVCNLASIALPRYVR 456
D CN S + ++ SNLC EI + P E A+C L++ L
Sbjct: 415 QNVDHCNTHSPFDPQVAPVRQSNLCLEIALPTKPLQHINDENGEIALCTLSAFNL----- 469
Query: 457 EKGVPVQSNVSKLVGSRDSKNRLFDFERLAEVTKIITENLNKIIDVNHYPIETTRRSNLR 516
++ + + L E+ + +L+ ++D YP+ +RS+L
Sbjct: 470 --------------------GKIENLDELEELADLAVRSLDALLDYQDYPVVAAKRSSLA 509
Query: 517 HRPIGIGIQGLADTFILLGLPFESPEAQQLNKDIFETIYYHALKASAELAVKDGPYETYF 576
R +GIG+ A G+ + A L FE I Y+ LKAS LA + G E +
Sbjct: 510 RRSLGIGVINYAYYLAKNGVRYSDGSANDLTHRTFEAIQYYLLKASMNLAKEQGACEYFN 569
Query: 577 GSPMSKGILQVDMW-----NITPSD-RWDWSSLREMISKNGVRNSLLVAPMPTASTSQIL 630
+ +KGIL +D + ++T +DW SLR+ I + G+RNS L A MP+ ++SQI
Sbjct: 570 ETTYAKGILPIDTYKKDLDSLTQEPLHYDWESLRKDIQEFGLRNSTLTALMPSETSSQIS 629
Query: 631 GNNECFEP 638
EP
Sbjct: 630 NATNGIEP 637
Database: swissprot
Posted date: Mar 23, 2013 2:32 AM
Number of letters in database: 191,569,459
Number of sequences in database: 539,616
Lambda K H
0.318 0.134 0.398
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 299,193,933
Number of Sequences: 539616
Number of extensions: 12851619
Number of successful extensions: 30456
Number of sequences better than 100.0: 50
Number of HSP's better than 100.0 without gapping: 91
Number of HSP's successfully gapped in prelim test: 16
Number of HSP's that attempted gapping in prelim test: 29821
Number of HSP's gapped (non-prelim): 157
length of query: 810
length of database: 191,569,459
effective HSP length: 126
effective length of query: 684
effective length of database: 123,577,843
effective search space: 84527244612
effective search space used: 84527244612
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 66 (30.0 bits)