Query 003575
Match_columns 810
No_of_seqs 260 out of 1656
Neff 6.6
Searched_HMMs 46136
Date Fri Mar 29 02:01:29 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/003575.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/003575hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG1112 Ribonucleotide reducta 100.0 8E-240 2E-244 1896.6 54.7 791 1-810 1-796 (796)
2 PLN02437 ribonucleoside--dipho 100.0 3E-207 7E-212 1824.3 77.3 810 1-810 1-813 (813)
3 PRK06539 ribonucleotide-diphos 100.0 1E-197 2E-202 1741.6 72.9 780 1-809 3-822 (822)
4 PRK07207 ribonucleotide-diphos 100.0 2E-197 4E-202 1765.3 70.1 781 1-809 149-965 (965)
5 PRK12365 ribonucleotide-diphos 100.0 3E-195 5E-200 1763.9 71.8 777 1-809 236-1046(1046)
6 PRK08447 ribonucleotide-diphos 100.0 2E-184 4E-189 1617.5 65.7 697 1-766 2-774 (789)
7 PHA02572 nrdA ribonucleoside-d 100.0 5E-182 1E-186 1598.1 64.9 701 1-772 4-741 (753)
8 PRK07088 ribonucleotide-diphos 100.0 1E-181 2E-186 1595.0 64.2 694 1-764 3-755 (764)
9 PRK09103 ribonucleotide-diphos 100.0 3E-181 6E-186 1589.9 63.4 707 1-773 2-744 (758)
10 PRK09209 ribonucleotide-diphos 100.0 9E-181 2E-185 1588.8 63.9 695 2-763 11-751 (761)
11 PRK12364 ribonucleotide-diphos 100.0 5E-176 1E-180 1569.2 64.6 665 34-763 126-832 (842)
12 PRK07187 ribonucleotide-diphos 100.0 4E-158 1E-162 1386.7 54.5 624 71-764 25-698 (721)
13 PRK07632 ribonucleotide-diphos 100.0 8E-157 2E-161 1372.2 51.1 575 127-764 72-690 (699)
14 TIGR02506 NrdE_NrdA ribonucleo 100.0 2E-153 4E-158 1346.2 56.5 595 145-761 1-617 (617)
15 PRK06406 ribonucleotide-diphos 100.0 3E-152 7E-157 1342.8 63.6 652 2-768 6-726 (771)
16 PRK08188 ribonucleotide-diphos 100.0 2E-152 3E-157 1336.3 53.6 589 113-766 69-702 (714)
17 PRK07306 ribonucleotide-diphos 100.0 2E-151 4E-156 1332.2 51.8 586 113-764 63-706 (720)
18 PRK09102 ribonucleotide-diphos 100.0 1E-145 3E-150 1265.1 53.2 552 131-770 9-576 (601)
19 PRK08665 ribonucleotide-diphos 100.0 2E-142 4E-147 1267.0 55.5 553 137-766 6-570 (752)
20 PRK08115 ribonucleotide-diphos 100.0 1E-142 2E-147 1254.5 51.6 567 162-770 125-780 (858)
21 TIGR02504 NrdJ_Z ribonucleosid 100.0 1E-140 3E-145 1232.1 54.0 564 151-758 2-577 (586)
22 PRK06948 ribonucleotide reduct 100.0 4E-137 9E-142 1195.9 51.7 565 137-764 6-585 (595)
23 TIGR02510 NrdE-prime ribonucle 100.0 4E-136 9E-141 1179.3 47.0 525 137-766 12-557 (571)
24 PRK06556 vitamin B12-dependent 100.0 1E-134 2E-139 1206.3 53.8 587 137-770 52-702 (953)
25 PF02867 Ribonuc_red_lgC: Ribo 100.0 1E-135 3E-140 1182.2 44.4 525 215-758 1-538 (538)
26 cd01679 RNR_I Class I ribonucl 100.0 9E-128 2E-132 1090.3 43.9 454 167-760 1-460 (460)
27 cd02888 RNR_II_dimer Class II 100.0 3E-127 6E-132 1088.5 44.0 459 187-758 2-462 (464)
28 PRK08332 ribonucleotide-diphos 100.0 1E-124 2E-129 1158.0 63.9 484 237-762 747-1612(1740)
29 COG0209 NrdA Ribonucleotide re 100.0 2E-124 3E-129 1107.9 53.4 623 42-771 4-645 (651)
30 PRK07562 ribonucleotide-diphos 100.0 6E-123 1E-127 1105.5 54.3 558 166-769 105-925 (1220)
31 cd01676 RNR_II_monomer Class I 100.0 3.9E-85 8.4E-90 763.0 36.8 493 150-776 4-623 (658)
32 TIGR02505 RTPR ribonucleoside- 100.0 2.1E-72 4.6E-77 656.7 27.9 481 143-750 8-640 (713)
33 cd00576 RNR_PFL Ribonucleotide 100.0 6.6E-49 1.4E-53 442.6 24.1 372 186-757 1-400 (401)
34 PF00317 Ribonuc_red_lgN: Ribo 99.7 2.7E-18 5.8E-23 151.6 5.1 72 142-213 2-83 (83)
35 PF03477 ATP-cone: ATP cone do 99.3 5.2E-12 1.1E-16 113.1 8.6 85 1-89 1-90 (90)
36 PRK08270 anaerobic ribonucleos 99.2 1.3E-08 2.8E-13 121.2 33.3 247 390-748 345-613 (656)
37 PRK09263 anaerobic ribonucleos 99.1 3.7E-07 7.9E-12 109.9 40.2 257 385-757 346-635 (711)
38 PRK07111 anaerobic ribonucleos 99.0 5.6E-07 1.2E-11 108.7 32.5 261 385-753 378-673 (735)
39 PRK00464 nrdR transcriptional 97.8 2E-05 4.4E-10 77.4 4.9 77 1-79 49-129 (154)
40 TIGR02487 NrdD anaerobic ribon 97.7 0.0035 7.5E-08 74.7 21.8 251 388-750 233-514 (579)
41 PRK10977 hypothetical protein; 97.7 0.0034 7.4E-08 73.2 20.9 258 385-778 190-469 (509)
42 cd01675 RNR_III Class III ribo 97.5 0.0043 9.3E-08 73.6 19.7 254 386-752 228-510 (555)
43 PF13597 NRDD: Anaerobic ribon 97.3 0.0032 6.9E-08 74.5 14.9 241 385-748 224-478 (546)
44 PRK14704 anaerobic ribonucleos 97.3 0.019 4.1E-07 68.7 21.2 260 385-753 259-552 (618)
45 PRK08271 anaerobic ribonucleos 97.3 0.0097 2.1E-07 71.0 18.1 106 440-562 347-460 (623)
46 TIGR00244 transcriptional regu 97.2 0.00065 1.4E-08 65.6 6.4 72 2-78 50-128 (147)
47 COG1327 Predicted transcriptio 96.7 0.0033 7.1E-08 60.8 6.4 72 2-78 50-128 (156)
48 PRK08579 anaerobic ribonucleos 96.4 0.15 3.3E-06 61.2 18.9 203 442-749 334-557 (625)
49 PRK07207 ribonucleotide-diphos 95.7 0.026 5.7E-07 70.7 8.6 64 1-64 34-111 (965)
50 TIGR02827 RNR_anaer_Bdell anae 95.3 0.26 5.6E-06 58.7 14.2 108 439-571 319-431 (586)
51 PRK12365 ribonucleotide-diphos 94.5 0.11 2.4E-06 65.9 9.0 64 1-64 9-88 (1046)
52 PF11230 DUF3029: Protein of u 89.8 11 0.00024 43.2 16.0 264 382-778 173-457 (487)
53 COG1328 NrdD Oxygen-sensitive 75.6 9.2 0.0002 46.6 8.5 61 2-65 4-71 (700)
54 PF04282 DUF438: Family of unk 52.9 31 0.00066 29.8 5.0 43 14-61 14-56 (71)
55 PF03847 TFIID_20kDa: Transcri 38.8 67 0.0014 27.5 4.9 32 540-571 19-50 (68)
56 COG1328 NrdD Oxygen-sensitive 35.5 1.2E+02 0.0027 37.3 8.3 45 516-560 480-526 (700)
57 PRK15329 chaperone protein Sic 34.6 45 0.00097 32.4 3.6 29 383-411 57-88 (138)
58 cd07981 TAF12 TATA Binding Pro 32.5 96 0.0021 26.6 5.0 33 539-571 20-52 (72)
59 COG2099 CobK Precorrin-6x redu 27.3 64 0.0014 34.6 3.6 81 522-618 53-134 (257)
No 1
>KOG1112 consensus Ribonucleotide reductase, alpha subunit [Nucleotide transport and metabolism]
Probab=100.00 E-value=7.6e-240 Score=1896.57 Aligned_cols=791 Identities=71% Similarity=1.200 Sum_probs=772.5
Q ss_pred CeEEccCCceeccChhHHHHHHHHHHhcCCCCCCCHHHHHHHHHhhcCCCCCHHHHHHHHHHHHHhhccCCCChHHHHHH
Q 003575 1 MYVIKRDGRKEPVRFDKITARLKKLSYGLSKEHCDPVLVAQKVCAGVYKGVTTTQLDELAAETAAAMTVNHPDYALLAGR 80 (810)
Q Consensus 1 ~~v~krdG~~e~~~~~ki~~~i~~~~~~l~~~~v~~~~i~~~~~~~~~~~itt~ei~~~~~~~a~~~~~~~p~y~~lA~r 80 (810)
|+|+|||||.|++.+|||+.+|+++|+||++++|||.+|+++|++++|.|+||.||+++++|+|+.|++.||||..||+|
T Consensus 1 myv~krdgr~E~v~fDkItsRi~~l~ygL~~d~vD~v~vt~kvisG~y~gvTt~eldnlaaEtaA~mtt~HPdYa~laaR 80 (796)
T KOG1112|consen 1 MYVVKRDGRQEKVHFDKITSRIQKLSYGLDMDHVDPVEVTQKVISGVYEGVTTVELDNLAAETAASMTTKHPDYAILAAR 80 (796)
T ss_pred CcccccccccccccHhHHHHHHHHHhcCCCccccCHHHHHHHHHhhhcCCchhHhHHHHHHHHHHHhhcCCccHHHHHHH
Confidence 78999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHhhhhhhHHHHHHHHHhhhhcCccccCcchHHHHHHHhcHHHHHhhhcccccCCCChhhHHHHHHhhccccC
Q 003575 81 VAVSNLHKITKNSFSETIKDMYNYYNKRSGKKASLVADDVYEIIMKNAACLDGAIIYDRDFDFDYFGFKTLERSYLLKMD 160 (810)
Q Consensus 81 l~~~~l~k~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~l~~~i~~~rd~~~~y~g~~~l~~~Yllk~~ 160 (810)
|.+++|||++.+.|++++++|++|+++++|...+++++++|.++++|.+.|++.|.|+|||.|+|||+++|+++||||.+
T Consensus 81 IavSnlHk~T~k~Fs~vi~~l~~~vn~~tgk~apmisd~~y~Iv~~n~d~lnsaIiYdrDf~y~yFGfkTLerSYLlkin 160 (796)
T KOG1112|consen 81 IAVSNLHKQTKKVFSEVIEDLHNHVNPHTGKHAPMISDEVYNIVMENKDRLNSAIIYDRDFSYNYFGFKTLERSYLLKIN 160 (796)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhcCcccCCcCCcccHHHHHHHHhhhhhhccceeeccccceeecchhHHHHHHHHHhC
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CcccCCHHHHHHHHHhhhccCChHHHHHHHHHHhcCceecCCccccccCCCCCCCcccccccccCCChHHHHHHHHHHHH
Q 003575 161 SRVVERPQHMLMRVSVGIHKDDTDSALKTYHLMSQHWFTHATPTLFNAGTPQPQLSSCFLLCMKDDSIEGIYDTLKKCAI 240 (810)
Q Consensus 161 g~~~E~pq~~~~RVA~~l~~~~~~~~~~~y~~ls~~~~~~atP~l~naGt~~~~lsSCfl~~~~~DS~~~I~~~~~~~a~ 240 (810)
|++.|+||||+||||.+||++|++.|.++|++||.++|+||||||||+||+++|||||||+.|.+||+||||+++++||+
T Consensus 161 g~v~ERPQhm~MRVa~gIH~~Die~aietYnLmS~ryfTHAsPTLfnagt~rPQlsSCFL~tmk~DSIeGiydtlkqcA~ 240 (796)
T KOG1112|consen 161 GEVAERPQHMLMRVALGIHGEDIEAAIETYNLMSERYFTHASPTLFNAGTPRPQLSSCFLLTMKDDSIEGIYDTLKQCAM 240 (796)
T ss_pred CchhcChHhHhHHhhhccchhhHHHHHHHHHHhhhhhhccCCchhhhcCCCCccccceEEEEecccchHHHHHHHHHhhh
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHhcCCcceeeeeecCCCCcccCCCCCCCCcccHHHHHHHHHHHHhhCCCcccCceEEeecCCcccHHHHHHhhhhcCc
Q 003575 241 ISKSAGGIGLSIHNIRASGSYIHGTNGSSNGIVPMLQVFNDTARYVDQGGGKRKGAFAIYLEPWHADIFEFLDLRKNQGK 320 (810)
Q Consensus 241 isk~ggGiG~~~s~iR~~Gs~I~g~~g~ssG~vp~lk~~~~~~~~v~qgG~~Rrga~~~yl~~wH~DI~~Fl~~K~~~g~ 320 (810)
|||.+||||+++++||+.||.|+|++|+|+|+||++++||+++++|+|||++|+||.++||++||.||++||++|+|+|+
T Consensus 241 IsKsaGGIGl~vh~IRatGs~i~gTnGtSNGliPmirV~NntaRYvdQGg~kRpGafAiyLEPWHadifdFlelrKn~G~ 320 (796)
T KOG1112|consen 241 ISKSAGGIGLNVHNIRATGSYIAGTNGTSNGLIPMIRVFNNTARYVDQGGNKRPGAFAIYLEPWHADIFDFLELRKNTGK 320 (796)
T ss_pred hhhccCcceEEEeeeeccCcEEecCCCCCCCccchhhhhcchhhHhhcCCCCCCceeEEEechhHHHHHHHHHHHhccCh
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ccccccccceecccCHHHHHHHhcCCceEEecCCCCCCchhhhhhhHHHHHHHHHHcCceeEEEeHHHHHHHHHHHHHhh
Q 003575 321 EECRARDLFYALWVPDLFMERVRDDGKWSLFCPSDASGLADSWGIEFEHLYSQYEEEGRAKMVISARKLWFEILNSQIET 400 (810)
Q Consensus 321 e~~r~~~l~~sv~ipD~Fm~rv~~~~~w~Lf~P~~~~~L~~~~g~eF~~~Y~~~e~~~~~~~~v~Ar~l~~~I~~~~~et 400 (810)
|+.|+|++|+++||||+||+||++|++|+||||++||||.|+||+||+.+|.+||++|+.+++|+|++||..|+++|.||
T Consensus 321 Ee~RARdlF~ALWipDLFMkRVe~n~~WslfcP~~apGL~dvwG~EFe~LY~kYEkegr~~k~vkAqklW~aIleaQ~ET 400 (796)
T KOG1112|consen 321 EEFRARDLFYALWIPDLFMKRVENNGEWSLFCPNEAPGLDDVWGDEFEALYTKYEKEGRGKKTVKAQKLWYAILEAQVET 400 (796)
T ss_pred HHHHHHHHHHHHhhhHHHHHHHhcCCceEEECCccCCchHHHHhHHHHHHHHHHHHhccccceeeHHHHHHHHHHHhhcc
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCceeEechhhhhhCCCCCCCeEEeecCCccccccCCCCCceeeeccccCchhhhhccCCccccccccccccCCCCCccC
Q 003575 401 GTPYMLFKDSCNRKSNQQNLGTIKSSNLCTEIVEFSSPEETAVCNLASIALPRYVREKGVPVQSNVSKLVGSRDSKNRLF 480 (810)
Q Consensus 401 G~P~i~f~D~~Nr~~~~~~~g~I~~sNlC~EI~~~~~~~e~~~CNL~SInL~~~v~~~~~~~~~~~~~~~g~~~~~~~~f 480 (810)
|.|||+|||+|||++||+|+|+|+|||||+||++|++|+|++||||+||.|++||.. +..|
T Consensus 401 GtPym~yKDacNRkSNQqnlGtIk~SNLCtEIvEYsspdE~aVCNLASiaLp~fv~~-------------------~~~y 461 (796)
T KOG1112|consen 401 GTPYMLYKDACNRKSNQQNLGTIKSSNLCTEIVEYSSPDETAVCNLASIALPMFVTP-------------------EKTY 461 (796)
T ss_pred CCceEEehhhhcccccccccceeeecchhHHHhhccCCcceeeeehHhhhhhhhccc-------------------cccc
Confidence 999999999999999999999999999999999999999999999999999999964 4679
Q ss_pred CHHHHHHHHHHHHHHHHHHHhcCCCChHHHHHHhhccCCceeecchHHHHHHHcCCCCCCHHHHHHHHHHHHHHHHHHHH
Q 003575 481 DFERLAEVTKIITENLNKIIDVNHYPIETTRRSNLRHRPIGIGIQGLADTFILLGLPFESPEAQQLNKDIFETIYYHALK 560 (810)
Q Consensus 481 D~~~l~~~v~~avr~LD~vId~~~~p~~~~~~~~~~~R~iGlGv~Glad~L~~~gi~y~S~ea~~l~~~i~e~i~~~a~~ 560 (810)
||++|++++++.+|+||++||+|+||+|+|+++|.|+||||||||||||+|+.|++||+|+||+.|+.+|||+|||+|++
T Consensus 462 dF~kl~ev~kvvt~NLNkiID~NYYPv~eAr~SNmrhRPigiGVQGlAD~f~llr~pfeS~eA~~LN~qIFEtiYy~ale 541 (796)
T KOG1112|consen 462 DFEKLAEVTKVVTRNLNKIIDVNYYPVEEARRSNMRHRPIGIGVQGLADAFILLRLPFESAEARLLNKQIFETIYYAALE 541 (796)
T ss_pred cHHHHHHHHHHHHhhhhheeccCcccchHhhhcccccCCccccchhHHHHHHHHcCCCCChHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHcCCCCCCCCCccccCccccccccCCCCCcccHHHHHHHHHhcCccccceeccCCCcchhhhcCCCccccccc
Q 003575 561 ASAELAVKDGPYETYFGSPMSKGILQVDMWNITPSDRWDWSSLREMISKNGVRNSLLVAPMPTASTSQILGNNECFEPYT 640 (810)
Q Consensus 561 aS~eLAke~G~~~~f~~S~~~~G~l~~d~~~~~~~~~~dW~~Lr~~i~~~G~RNs~l~AiaPT~stS~i~g~s~gieP~~ 640 (810)
||+|||++.|||+.|+|||.|+|+||||+|+++|++.|||+.||++|++||+|||.++|.|||+|||||+|++++|||+.
T Consensus 542 AScelA~~eGpyetyeGSPvSkGilq~dmw~~~pt~~wDW~~Lre~I~khGvRNSLl~ApMPTAsTsQIlGnNE~fEP~t 621 (796)
T KOG1112|consen 542 ASCELAQKEGPYETYEGSPVSKGILQFDMWNVKPTDLWDWATLREKIAKHGVRNSLLVAPMPTASTSQILGNNECFEPYT 621 (796)
T ss_pred HhHHHHHhcCCCcccCCCcccccccchhhcCCCCCcccCHHHHHHHHHHhccccceeeccCCCcchhhhhcCccccCccc
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cceeeEEcccCceEEeCHHHHHHHHHcCCChHHHHHHHHhcCCccccccCCchHHHhhccccccCChHHHHHHHHHhCcc
Q 003575 641 SNIYTRRVLSGEFIVVNKHLLKDLTELGLWSHALKTKIIYENGSVSKISEIPEELKAIYKTVWEIKQKTLVDMAADRGCY 720 (810)
Q Consensus 641 s~~y~r~~~~g~~~~vn~~l~~~l~~~g~~~~~~~~~i~~~~Gsv~~~~~lp~~~k~~y~tA~ei~~~~~i~~~a~~Q~~ 720 (810)
+|+|+||+++|+|++||+||+++|.++|+|+++||+.++..+||||++|.+|+++|++|||+|||+|+.+|+|||+|+.|
T Consensus 622 sNiYsRRvlsGeFqiVN~hll~DLv~~glW~~~mKn~lI~~nGSIq~i~~iP~~lk~lYkTvWEIsqktvi~mAAdRg~~ 701 (796)
T KOG1112|consen 622 SNIYSRRVLSGEFQIVNPHLLKDLVELGLWDDEMKNKLIANNGSIQNIPEIPQDLKELYKTVWEISQKTVIDMAADRGAF 701 (796)
T ss_pred ccceeeeecccceEEEcHHHHHHHHHhccCCHHHHHHHHhcCCccccCccCCHHHHHHHHHHHHHHHHHHHHHHhhcccc
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cccccceeEeeCCCChHHHHHHHHHHHHcCCceEEEEecCccccccccccccccccccccc---cCcc--chhhhhhccc
Q 003575 721 IDQSQSLNIHMEQPDHGKLTSLHFYAWSKGMKTGMYYLRTRAAADAIKFTVDTSVLNNEKA---NRAD--NDVEANLAQV 795 (810)
Q Consensus 721 vDqs~S~nl~~~~~~~~~l~~~~~~Awk~GlKt~~yY~r~~~~~~~~~~~~~~~~~~~~~~---~~~~--~~~~~~~~~~ 795 (810)
||||||+||++..+++++|.++|+|.||+||||||||+|+++++++++||||+..+..... +++. ++...+...+
T Consensus 702 iDQSqSlNi~~~~P~y~klTSmHFYgwkkGLKTGMYYLRt~~a~~aIqFTvdk~~~~~~~~~~~~~~~~~e~~~~~~~~~ 781 (796)
T KOG1112|consen 702 IDQSQSLNIHLAKPNYGKLTSMHFYGWKKGLKTGMYYLRTRPAANAIQFTVDKKVLNEKAEVAEGDSKEEEEDEYNTAVM 781 (796)
T ss_pred cccccceeeeecCCCccccceeEeeehhcccccceeEEeccccccceEEEecHHHhcccccccccchhhhHHhhhhhhhh
Confidence 9999999999999999999999999999999999999999999999999999977554221 1111 1122255678
Q ss_pred ccccCCccccccCCC
Q 003575 796 VCSLKNQEECMACGS 810 (810)
Q Consensus 796 ~~~~~~~~~c~~c~~ 810 (810)
+|+++++|.|++||+
T Consensus 782 ~c~~~n~e~C~mCss 796 (796)
T KOG1112|consen 782 VCSLDNPEACLMCSS 796 (796)
T ss_pred hhccCCchHhhhcCC
Confidence 999999999999996
No 2
>PLN02437 ribonucleoside--diphosphate reductase large subunit
Probab=100.00 E-value=3.4e-207 Score=1824.25 Aligned_cols=810 Identities=82% Similarity=1.325 Sum_probs=769.1
Q ss_pred CeEEccCCceeccChhHHHHHHHHHHhcCCCCCCCHHHHHHHHHhhcCCCCCHHHHHHHHHHHHHhhccCCCChHHHHHH
Q 003575 1 MYVIKRDGRKEPVRFDKITARLKKLSYGLSKEHCDPVLVAQKVCAGVYKGVTTTQLDELAAETAAAMTVNHPDYALLAGR 80 (810)
Q Consensus 1 ~~v~krdG~~e~~~~~ki~~~i~~~~~~l~~~~v~~~~i~~~~~~~~~~~itt~ei~~~~~~~a~~~~~~~p~y~~lA~r 80 (810)
|+|+||||+.|+|+++||+++|+++|+||+.+.+|+..++.++..++++||||+||+++++++|++++..||||++||||
T Consensus 1 ~~v~k~~g~~~~~~~~k~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~t~~el~~~~~~~a~~~~~~~p~y~~~Aar 80 (813)
T PLN02437 1 MYVVKRDGRQETVHFDKITARLKKLSYGLSQDHCDPVLVAQKVCAGVYKGVTTSQLDELAAETAAAMTTNHPDYAILAAR 80 (813)
T ss_pred CeEEEeCCceeecCHHHHHHHHHHHhcCCCCCCCCHHHHHHHHHhhccCCCCHHHHHHHHHHHHHHhcccCCcHHHHHHH
Confidence 68999999999999999999999999999877899999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHhhhhhhHHHHHHHHHhhhhcCccccCcchHHHHHHHhcHHHHHhhhcccccCCCChhhHHHHHHhhccccC
Q 003575 81 VAVSNLHKITKNSFSETIKDMYNYYNKRSGKKASLVADDVYEIIMKNAACLDGAIIYDRDFDFDYFGFKTLERSYLLKMD 160 (810)
Q Consensus 81 l~~~~l~k~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~l~~~i~~~rd~~~~y~g~~~l~~~Yllk~~ 160 (810)
|++++|||++.++|.+.+..++.++...+|...+++++++++++.+|+++|++.|+++||+.|+|+|+++|+++||+|.+
T Consensus 81 l~~~~l~k~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~i~~~rD~~~~y~g~~~l~~rYllk~~ 160 (813)
T PLN02437 81 IAVSNLHKNTKKSFSETVKDMYNHVNERSGLKAPLIADDVYDIIMKNAARLDSEIIYDRDFDYDYFGFKTLERSYLLKVN 160 (813)
T ss_pred HHHHHHHHHHHhhhhhHHHHHHHHHHHhcccchhhcCHHHHHHHHHHHHHHHHHhCcccccCCCHHHHHHHHHhheecCC
Confidence 99999999999999998899998887777888899999999999999999999999999999999999999999999977
Q ss_pred CcccCCHHHHHHHHHhhhccCChHHHHHHHHHHhcCceecCCccccccCCCCCCCcccccccccCCChHHHHHHHHHHHH
Q 003575 161 SRVVERPQHMLMRVSVGIHKDDTDSALKTYHLMSQHWFTHATPTLFNAGTPQPQLSSCFLLCMKDDSIEGIYDTLKKCAI 240 (810)
Q Consensus 161 g~~~E~pq~~~~RVA~~l~~~~~~~~~~~y~~ls~~~~~~atP~l~naGt~~~~lsSCfl~~~~~DS~~~I~~~~~~~a~ 240 (810)
|.++|+||+||||||++|+.++++++++||++||+++|+||||||+||||+++|||||||+++.+||++|||++++++|+
T Consensus 161 ~~~~E~pq~~~mRVA~~l~~~~~~~a~~~Y~~ls~~~f~~aTPtL~naGt~~~qlsSCFl~~~~~Dsl~~I~~~~~~~a~ 240 (813)
T PLN02437 161 GKVVERPQHMLMRVSVGIHKDDIESAIKTYHLMSQRWFTHASPTLFNAGTPRPQLSSCFLICMKDDSIEGIYDTLKECAV 240 (813)
T ss_pred CCcccCHHHHHHHHHHHHcccCHHHHHHHHHHHHcCCcccCCchhhcCCCCCCCcceeeecCCCcchHHHHHHHHHHHHH
Confidence 88899999999999999999899999999999999999999999999999999999999998778999999999999999
Q ss_pred HHHhcCCcceeeeeecCCCCcccCCCCCCCCcccHHHHHHHHHHHHhhCCCcccCceEEeecCCcccHHHHHHhhhhcCc
Q 003575 241 ISKSAGGIGLSIHNIRASGSYIHGTNGSSNGIVPMLQVFNDTARYVDQGGGKRKGAFAIYLEPWHADIFEFLDLRKNQGK 320 (810)
Q Consensus 241 isk~ggGiG~~~s~iR~~Gs~I~g~~g~ssG~vp~lk~~~~~~~~v~qgG~~Rrga~~~yl~~wH~DI~~Fl~~K~~~g~ 320 (810)
++|+|||||+|+|+|||+|++|+|++|.|+|+|||||+||+++++|+|||++||||+|+||++|||||++||++|+++|+
T Consensus 241 isk~gGGiG~~~s~iR~~Gs~I~g~~g~ssG~vpflk~~n~~~~~v~QgGg~RrGA~~vyL~~wH~DI~eFL~lK~~~g~ 320 (813)
T PLN02437 241 ISKSAGGIGLSVHNIRATGSYIRGTNGTSNGIVPMLRVFNDTARYVDQGGGKRKGAFAIYLEPWHADIFEFLDLRKNHGK 320 (813)
T ss_pred HHhcCCeEeecccccCCCCCcccCCCCCCCCchhHHHHHHHHHHHHHcCCCccccceeEEEeCCCccHHHHHHHhcccCc
Confidence 99999999999999999999999999999999999999999999999997699999999999999999999999999999
Q ss_pred ccccccccceecccCHHHHHHHhcCCceEEecCCCCCCchhhhhhhHHHHHHHHHHcCceeEEEeHHHHHHHHHHHHHhh
Q 003575 321 EECRARDLFYALWVPDLFMERVRDDGKWSLFCPSDASGLADSWGIEFEHLYSQYEEEGRAKMVISARKLWFEILNSQIET 400 (810)
Q Consensus 321 e~~r~~~l~~sv~ipD~Fm~rv~~~~~w~Lf~P~~~~~L~~~~g~eF~~~Y~~~e~~~~~~~~v~Ar~l~~~I~~~~~et 400 (810)
++.|++++|+||||||+|||||++|++|+||+|+++|+|.+.||++|+++|++||++|+.+++|+||+||++|++++|+|
T Consensus 321 e~~r~~~l~~sv~ipDlFM~rv~~d~~W~Lf~P~e~~~L~~~yG~eF~~~Y~~~e~~g~~~~~V~AreLw~~I~~s~~eT 400 (813)
T PLN02437 321 EEHRARDLFYALWIPDLFMERVQSNGDWSLFCPNEAPGLADCWGEEFERLYTKYEREGKAKKVVQAQQLWFAILESQIET 400 (813)
T ss_pred HhHHHHhcceeEEECHHHHHHHHcCCCEEEECCcccchHHHhhchHHHHHHHHHHhcCceeEEEEHHHHHHHHHHHHHHh
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCceeEechhhhhhCCCCCCCeEEeecCCccccccCCCCCceeeeccccCchhhhhccCCccccccccccccCCCCCccC
Q 003575 401 GTPYMLFKDSCNRKSNQQNLGTIKSSNLCTEIVEFSSPEETAVCNLASIALPRYVREKGVPVQSNVSKLVGSRDSKNRLF 480 (810)
Q Consensus 401 G~P~i~f~D~~Nr~~~~~~~g~I~~sNlC~EI~~~~~~~e~~~CNL~SInL~~~v~~~~~~~~~~~~~~~g~~~~~~~~f 480 (810)
|+|||+|+|+||+++|++|+|+|++||||+||+||++|+++++|||+||||++||.+++.+..++...++++.++....|
T Consensus 401 G~P~i~fkD~~N~~~~~~~~G~I~~SNlCtEI~~~~~~~e~avCNL~SINL~~~v~~~~~~~~~~~~~~~~~~~~~~~~f 480 (813)
T PLN02437 401 GTPYMLFKDSCNRKSNQQNLGTIKSSNLCTEIIEYTSPTETAVCNLASIALPRFVREKGVPLESHPSKLVGSLGSKNRYF 480 (813)
T ss_pred CCCeEEEhHHHhhcCCCccCCceEeecccccccccCCccceeeeecchhhHHHHHhcccccccccccccccccccccccC
Confidence 99999999999999999999999999999999999999999999999999999996543333444455666666666789
Q ss_pred CHHHHHHHHHHHHHHHHHHHhcCCCChHHHHHHhhccCCceeecchHHHHHHHcCCCCCCHHHHHHHHHHHHHHHHHHHH
Q 003575 481 DFERLAEVTKIITENLNKIIDVNHYPIETTRRSNLRHRPIGIGIQGLADTFILLGLPFESPEAQQLNKDIFETIYYHALK 560 (810)
Q Consensus 481 D~~~l~~~v~~avr~LD~vId~~~~p~~~~~~~~~~~R~iGlGv~Glad~L~~~gi~y~S~ea~~l~~~i~e~i~~~a~~ 560 (810)
||+.|+++|+++||+||+|||++.||+|+++++|+++|+||||||||||+|+++|++|+|+||++|+++|||+|+|+|++
T Consensus 481 D~~~L~~~v~~avr~LDnvID~n~yP~~~a~~~n~~~R~IGLGv~Glad~L~~lgi~Y~S~ea~~l~~~I~e~i~~~A~~ 560 (813)
T PLN02437 481 DFEKLAEVTAVVTRNLNKIIDVNYYPVETARRSNMRHRPIGIGVQGLADAFILLGMPFDSPEAQQLNKDIFETIYYHALK 560 (813)
T ss_pred CHHHHHHHHHHHHHHHHHHHHccCCchHHHHHHhhcCCCccccHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHcCCCCCCCCCccccCccccccccCCCCCcccHHHHHHHHHhcCccccceeccCCCcchhhhcCCCccccccc
Q 003575 561 ASAELAVKDGPYETYFGSPMSKGILQVDMWNITPSDRWDWSSLREMISKNGVRNSLLVAPMPTASTSQILGNNECFEPYT 640 (810)
Q Consensus 561 aS~eLAke~G~~~~f~~S~~~~G~l~~d~~~~~~~~~~dW~~Lr~~i~~~G~RNs~l~AiaPT~stS~i~g~s~gieP~~ 640 (810)
||++||+|+|+||.|++|+|++|+|++|.|+..++..+||++||++|++||+|||+++|||||+|||+|+|+|+||||+|
T Consensus 561 aS~eLAke~G~fp~f~~S~~~~G~~~~~~~~~~~~~~~dW~~Lr~~i~~~GlRNs~l~AiaPT~StS~i~g~s~giEP~~ 640 (813)
T PLN02437 561 ASSELAAREGPYETYAGSPVSKGILQPDMWGVTPSGRWDWAALREMISKNGVRNSLLVAPMPTASTSQILGNNECFEPYT 640 (813)
T ss_pred HHHHHHHHhCCCCCCCcCcchhhhccchhccCCCchhhhHHHHHHHHHHhCcchhceeccCCcHHHHHHcCCCCcccccc
Confidence 99999999999999999999999999999998776788999999999999999999999999999999999999999999
Q ss_pred cceeeEEcccCceEEeCHHHHHHHHHcCCChHHHHHHHHhcCCccccccCCchHHHhhccccccCChHHHHHHHHHhCcc
Q 003575 641 SNIYTRRVLSGEFIVVNKHLLKDLTELGLWSHALKTKIIYENGSVSKISEIPEELKAIYKTVWEIKQKTLVDMAADRGCY 720 (810)
Q Consensus 641 s~~y~r~~~~g~~~~vn~~l~~~l~~~g~~~~~~~~~i~~~~Gsv~~~~~lp~~~k~~y~tA~ei~~~~~i~~~a~~Q~~ 720 (810)
+|+|.|++.+|+|++||++|+++|+++|+|+++++++|+.++|++|++|.+|++++++|+|||||+|+++|+|||+||||
T Consensus 641 sn~y~R~~~~Ge~~~vn~~l~~~l~~~g~~~~~~~~~i~~~~gsvq~~~~lp~~~~~~f~tA~ei~~~~~I~~aA~rQ~~ 720 (813)
T PLN02437 641 SNIYSRRVLSGEFVVVNKHLLHDLTEMGLWTPTLKNKIIAENGSVQKIPEIPDDLKAIYKTVWEIKQRTLVDMAADRGCY 720 (813)
T ss_pred chheeEeecCceEEEECHHHHHHHHHcCCChHHHHHHHHhhCCCccCCCCCCHHHHHHhhhHHhCCHHHHHHHHHHhccc
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cccccceeEeeCCCChHHHHHHHHHHHHcCCceEEEEecCcccccccccccccccccccccc---Cccchhhhhhccccc
Q 003575 721 IDQSQSLNIHMEQPDHGKLTSLHFYAWSKGMKTGMYYLRTRAAADAIKFTVDTSVLNNEKAN---RADNDVEANLAQVVC 797 (810)
Q Consensus 721 vDqs~S~nl~~~~~~~~~l~~~~~~Awk~GlKt~~yY~r~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~ 797 (810)
||||||+|||+++++.++|.++|++|||+||||+|||||+++++++++||||++.+.....+ |...+........+|
T Consensus 721 IDQsqS~nl~l~~~t~~~i~~~~~~Awk~GLKt~~YY~R~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 800 (813)
T PLN02437 721 IDQSQSLNIHMDQPNFGKLTSLHFYAWSKGLKTGMYYLRSRAAADAIKFTVDTASLKPSATGVAAPEEEDVETKMAQMVC 800 (813)
T ss_pred cccccccccCCCCCCHHHHHHHHHHHHHcCCCeeEEEEeccccccceEEecchhhhccccccccCccccccchhhhhccC
Confidence 99999999999988999999999999999999999999999999999999997765422100 111112223345789
Q ss_pred ccCCccccccCCC
Q 003575 798 SLKNQEECMACGS 810 (810)
Q Consensus 798 ~~~~~~~c~~c~~ 810 (810)
+++|++.||+||+
T Consensus 801 ~~~~~~~c~~c~~ 813 (813)
T PLN02437 801 SLDNREECLACGS 813 (813)
T ss_pred CCCCccccccccC
Confidence 9999999999996
No 3
>PRK06539 ribonucleotide-diphosphate reductase subunit alpha; Validated
Probab=100.00 E-value=1.1e-197 Score=1741.64 Aligned_cols=780 Identities=34% Similarity=0.580 Sum_probs=731.4
Q ss_pred CeEEccCCceeccChhHHHHHHHHHHhcCCCCCCCHHHHHHHHHhhcCCCCCHHHHHHHHHHHHHhhccCCCChHHHHHH
Q 003575 1 MYVIKRDGRKEPVRFDKITARLKKLSYGLSKEHCDPVLVAQKVCAGVYKGVTTTQLDELAAETAAAMTVNHPDYALLAGR 80 (810)
Q Consensus 1 ~~v~krdG~~e~~~~~ki~~~i~~~~~~l~~~~v~~~~i~~~~~~~~~~~itt~ei~~~~~~~a~~~~~~~p~y~~lA~r 80 (810)
|+|+||||++|+|+++||+++|+++|+||+..++++.+|..++..+++|||||+||+++++++|++|+++||||++||||
T Consensus 3 ~~v~k~~g~~e~~~~~ki~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~tt~el~~~~~~~a~~~~~~~pdy~~~Aar 82 (822)
T PRK06539 3 ITVVKRDGSKEPYDANKVNAAIEDAARGLDDAITWVTQLASELEITLFDGITTQQLDEAVIQVALQNVKDDPAFDTVAAR 82 (822)
T ss_pred eEEEecCCccccCCHHHHHHHHHHHhcccCcccCcHHHHHHHHHhcccCCCCHHHHHHHHHHHHHHhhhhCccHHHHHHH
Confidence 57999999999999999999999999999766778899999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHhhhhhhH--HHHHH-----HHHhhhhcCccccCcchHHHHHHHhcHHHHHhhhcccccCCCChhhHHHHHH
Q 003575 81 VAVSNLHKITKNSFSE--TIKDM-----YNYYNKRSGKKASLVADDVYEIIMKNAACLDGAIIYDRDFDFDYFGFKTLER 153 (810)
Q Consensus 81 l~~~~l~k~~~~~~~~--~~~~~-----~~~~~~~~~~~~~l~~~~~~~~~~~~~~~l~~~i~~~rd~~~~y~g~~~l~~ 153 (810)
|++++|||++.++|.+ .++.+ +.++ +.++..|++++++++. .|+++|++.|+|+||+.|+|+|+++|++
T Consensus 83 l~~~~l~k~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~--~~~~~l~~~i~~~rD~~~~y~g~~~l~~ 158 (822)
T PRK06539 83 LLLKKIYKRVLGDYDSPEELQDLHANHFRRTI--EKGVAEGLLDSRLGGL--FDLERLAAALDPTRDELLKYIGVVTLNN 158 (822)
T ss_pred HHHHHHHHHHhccccchhHHHHHhHHHHHHHH--HhhccccccCHHHhCH--hHHHHHHhhhChhhhcCCCHHHHHHHHh
Confidence 9999999999988864 23333 2233 4678889999999873 6999999999999999999999999999
Q ss_pred hhcccc-CCcccCCHHHHHHHHHhhhcc---CChHHHHHHHHHHhcCceecCCccccccCCCCCCCcccccccccCCChH
Q 003575 154 SYLLKM-DSRVVERPQHMLMRVSVGIHK---DDTDSALKTYHLMSQHWFTHATPTLFNAGTPQPQLSSCFLLCMKDDSIE 229 (810)
Q Consensus 154 ~Yllk~-~g~~~E~pq~~~~RVA~~l~~---~~~~~~~~~y~~ls~~~~~~atP~l~naGt~~~~lsSCfl~~~~~DS~~ 229 (810)
+||+|. +|+++|+||++|||||++||. ++.+++++||++||+++|+||||||+|+||+++|||||||+++ +||++
T Consensus 159 rYllk~~~~~~~E~pq~~~mRVA~~la~~e~~~~~~a~~fY~~ls~~~f~~atPtL~NaGt~~~qlsSCFl~~v-~Dsl~ 237 (822)
T PRK06539 159 RYGIRARNGDALEVPQYFWMRIAMGLSLNEDDPTSSALAFYEKMSKLEYLAAGSTLVNAGTPYPQLSNCFVMEM-QDDIE 237 (822)
T ss_pred hccccCCCCCEeecHHHHHHHHHHHHHhhcCCcHHHHHHHHHHHHcCCeecCChhhhcCCCCCCCCceeeeccC-CCcHH
Confidence 999994 788899999999999999986 3578999999999999999999999999999999999999997 79999
Q ss_pred HHHHHHHHHHHHHHhcCCcceeeeeecCCCCcccCCCCCCCCcccHHHHHHHHHHHHhhCCCcccCceEEeecCCcccHH
Q 003575 230 GIYDTLKKCAIISKSAGGIGLSIHNIRASGSYIHGTNGSSNGIVPMLQVFNDTARYVDQGGGKRKGAFAIYLEPWHADIF 309 (810)
Q Consensus 230 ~I~~~~~~~a~isk~ggGiG~~~s~iR~~Gs~I~g~~g~ssG~vp~lk~~~~~~~~v~qgG~~Rrga~~~yl~~wH~DI~ 309 (810)
|||++++++|+++|+|||||+|||+|||+||+|+|++|.|+|||||||+||+++++|+||| +||||+|+||++|||||+
T Consensus 238 ~I~~~~~~~a~isk~gGGiG~~~s~iR~~Gs~I~g~~g~ssG~vpflk~~d~~~~~v~QgG-~RrGA~~~yL~~wH~DI~ 316 (822)
T PRK06539 238 HIAKTTRDVMWLTKGTGGIGLSVSKLRAQGSPIRSNNTTSTGPIPFMHTIDSVLRAVSRGG-KKFGALCFYMENWHMDFP 316 (822)
T ss_pred HHHHHHHHHHHHHhhCCceeecccccCCCCCcccCCCCCCCChhhHHHHHHHHHHHHHhCC-CCcCceEEEecCCCcCHH
Confidence 9999999999999999999999999999999999999999999999999999999999999 899999999999999999
Q ss_pred HHHHhhhhcCcccccccccceecccCHHHHHHHhcCCceEEecCCCCCCchhhhhhhHHHHHHHHHHcC-----ceeEEE
Q 003575 310 EFLDLRKNQGKEECRARDLFYALWVPDLFMERVRDDGKWSLFCPSDASGLADSWGIEFEHLYSQYEEEG-----RAKMVI 384 (810)
Q Consensus 310 ~Fl~~K~~~g~e~~r~~~l~~sv~ipD~Fm~rv~~~~~w~Lf~P~~~~~L~~~~g~eF~~~Y~~~e~~~-----~~~~~v 384 (810)
+||++|+++|++.+|++++|+||||||+||+||++|++|+||+|+++|+|.++||++|+++|.+||+.+ ..+++|
T Consensus 317 eFL~lk~n~g~e~~r~~~~n~sv~i~D~FM~~V~~d~~w~L~~P~~~~~l~~~yG~~f~~~Y~~~e~~~~~g~~~~~~~V 396 (822)
T PRK06539 317 EFLDLRQNSGDPYRRTRTANTAVWISDEFMKRVQNDEDWYLFDPLETPDLNELYGKAFSKRYAQYVEQAEAGRIRMFKRI 396 (822)
T ss_pred HHHHHhhcCCchhhhhccCceeeeeCHHHHHHHHcCCCeEEECCcccccHHHHhCcHHHHHHHHHHHhccccccceeeEE
Confidence 999999999999999999999999999999999999999999999999999999999999999999853 347999
Q ss_pred eHHHHHHHHHHHHHhhCCceeEechhhhhhCCCCCCCeEEeecCCccccccCCCCCceeeeccccCchhhhhccCCcccc
Q 003575 385 SARKLWFEILNSQIETGTPYMLFKDSCNRKSNQQNLGTIKSSNLCTEIVEFSSPEETAVCNLASIALPRYVREKGVPVQS 464 (810)
Q Consensus 385 ~Ar~l~~~I~~~~~etG~P~i~f~D~~Nr~~~~~~~g~I~~sNlC~EI~~~~~~~e~~~CNL~SInL~~~v~~~~~~~~~ 464 (810)
+||+||++|++++|+||+|||+|+|+||+++|++|.|+|++||||+||+|+++++|+++|||+||||++||++
T Consensus 397 ~Ar~Lw~~I~~~~~eTG~P~i~fkD~~N~~~~~~~~g~I~~SNlC~EI~l~~~~~e~~vCNL~SINL~~fv~~------- 469 (822)
T PRK06539 397 TAREQFRAILMSLQTTSHPWLTWKDTINNRALNNNTGTIHLSNLCTEICLPQDRDNVSVCNLASINLSRHLAD------- 469 (822)
T ss_pred eHHHHHHHHHHHHHHhCCCceEehhhHhhcCCCccCCcEeecCCcceeeccCCccccceeeeheeEHHHHhcc-------
Confidence 9999999999999999999999999999999999999999999999999999999999999999999999964
Q ss_pred ccccccccCCCCCccCCHHHHHHHHHHHHHHHHHHHhcCCCChHHHHHHhhccCCceeecchHHHHHHHcCCCCCCHHHH
Q 003575 465 NVSKLVGSRDSKNRLFDFERLAEVTKIITENLNKIIDVNHYPIETTRRSNLRHRPIGIGIQGLADTFILLGLPFESPEAQ 544 (810)
Q Consensus 465 ~~~~~~g~~~~~~~~fD~~~l~~~v~~avr~LD~vId~~~~p~~~~~~~~~~~R~iGlGv~Glad~L~~~gi~y~S~ea~ 544 (810)
..|||+.|+++|+++||+||||||+|.||+|+++++|+++|+||||+|||||+|+++|++|+|+||+
T Consensus 470 -------------~~fD~~~l~~~v~~avR~LDnVID~n~yP~~~a~~~n~~~R~IGLGvmGlad~L~~lgi~YdS~eA~ 536 (822)
T PRK06539 470 -------------GELDWAQLEESTRLAVRQLDNLIDITASSVKEADFSNQQNRAIGLGVMGFTDMVERLGYSYESEEAY 536 (822)
T ss_pred -------------ccCcHHHHHHHHHHHHHHHHHHHHcCcccHHHHHHHHHhcccccccchhHHHHHHHcCCCCCCHHHH
Confidence 2699999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHcCCCCCCCCCccccCccccccccCC-----------CCCcccHHHHHHHHHhcCcc
Q 003575 545 QLNKDIFETIYYHALKASAELAVKDGPYETYFGSPMSKGILQVDMWNIT-----------PSDRWDWSSLREMISKNGVR 613 (810)
Q Consensus 545 ~l~~~i~e~i~~~a~~aS~eLAke~G~~~~f~~S~~~~G~l~~d~~~~~-----------~~~~~dW~~Lr~~i~~~G~R 613 (810)
+++++|||+|+|+|++||++||+|+|+||.|++|+|++|+||+|.|+.. ++..+||+.||++++ +|+|
T Consensus 537 ~l~~~i~e~i~~~A~~aS~eLAkE~G~fp~f~~S~~~~G~l~~d~~~~~~~~~~~~~~~~~~~~~dW~~L~~~i~-~GlR 615 (822)
T PRK06539 537 DLIDRIMEHISYAAIDESADLAAERGAYPNFEGSRWSRGMVPVDSIALLEADRGVPVDVNRTTRLDWDALRAKVR-GGMR 615 (822)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhCCCCCcccChhhhhhcchhhhhhhhhhccccccccccchhcHHHHHHHHH-hCee
Confidence 9999999999999999999999999999999999999999999887632 123689999999985 6999
Q ss_pred ccceeccCCCcchhhhcCCCccccccccceeeEEcccCceEEeCHHHHHHHHHcCCChHHHHHHHHhcCCccccccCCch
Q 003575 614 NSLLVAPMPTASTSQILGNNECFEPYTSNIYTRRVLSGEFIVVNKHLLKDLTELGLWSHALKTKIIYENGSVSKISEIPE 693 (810)
Q Consensus 614 Ns~l~AiaPT~stS~i~g~s~gieP~~s~~y~r~~~~g~~~~vn~~l~~~l~~~g~~~~~~~~~i~~~~Gsv~~~~~lp~ 693 (810)
||+++|||||||||+|+|+|+||||+|+++|.|++.+|+|.++|++|+++|+++|+| ++++++|+..+|++|+++.+|+
T Consensus 616 Ns~l~AiAPTgS~S~i~g~S~gIEP~~s~~y~R~~~~G~f~~vn~~l~~~L~~~g~~-~~~~~~i~~~~Gsvq~i~~iP~ 694 (822)
T PRK06539 616 NATLMAIAPTASIGLVAGTTPGLDPQFSQIFSRSTSSGKFLEVNRNLVADLKELGLW-ETVREEILRSQGDIQEIAAIPD 694 (822)
T ss_pred ccceeecCCchhHHHhcCCCCCcCcchhhhheeecccceEEEeCHHHHHHHHHcCCC-HHHHHHHHHhCCCccCcccCCh
Confidence 999999999999999999999999999999999999999999999999999999999 5788889999999999999999
Q ss_pred HHHhhccccccCChHHHHHHHHHhCcccccccceeEeeCCCChHHHHHHHHHHHHcCCceEEEEecCccccccccccccc
Q 003575 694 ELKAIYKTVWEIKQKTLVDMAADRGCYIDQSQSLNIHMEQPDHGKLTSLHFYAWSKGMKTGMYYLRTRAAADAIKFTVDT 773 (810)
Q Consensus 694 ~~k~~y~tA~ei~~~~~i~~~a~~Q~~vDqs~S~nl~~~~~~~~~l~~~~~~Awk~GlKt~~yY~r~~~~~~~~~~~~~~ 773 (810)
+++++|+|||||+|++||+|||++|||||||||+|||+++++.++|.++|++||++|||| |||+|+++++++++||||.
T Consensus 695 ~~~~~f~tA~eI~~~~~I~maA~rQ~~IDqsiS~nl~l~~~t~~~v~~iy~~Aw~~GlKT-~YYlrt~~~~~~~~~t~~~ 773 (822)
T PRK06539 695 EIKALYRTSFQLSPYAFLEVAARAQKWVDQAISRNMYLESRDIGDMMDIYTAAWEMGVKT-TYYLHMKPRHTAEQSTVKV 773 (822)
T ss_pred HHHhhcCcHhhCCHHHHHHHHHHHCccchhhcCCeeecCCCCHHHHHHHHHHHHHcCCCe-EEeeccchhhhhhhhcccc
Confidence 999999999999999999999999999999999999999999999999999999999999 9999999999999999999
Q ss_pred cccccccccCc-----------cchhhhhhcccccccCCcc--ccccCC
Q 003575 774 SVLNNEKANRA-----------DNDVEANLAQVVCSLKNQE--ECMACG 809 (810)
Q Consensus 774 ~~~~~~~~~~~-----------~~~~~~~~~~~~~~~~~~~--~c~~c~ 809 (810)
+.....++.++ .+...+..+...|+.+.++ .|++|.
T Consensus 774 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 822 (822)
T PRK06539 774 NKSAERRGGPRRGFAGFGAGVPPAVSADLIPGASCPVDAQAPQQCESCR 822 (822)
T ss_pred chhcccCCCCCCcccccCCCCCceeecccccccCCCCCCCCCCCCCCCC
Confidence 88665444322 1222334456679998775 699994
No 4
>PRK07207 ribonucleotide-diphosphate reductase subunit alpha; Validated
Probab=100.00 E-value=2e-197 Score=1765.28 Aligned_cols=781 Identities=39% Similarity=0.674 Sum_probs=727.7
Q ss_pred CeEEccCCceeccChhHHHHHHHHHHhcCCCCCCCHHHHHHHHHhhcCCCCCHHHHHHHHHHHHHhhccCCCChHHHHHH
Q 003575 1 MYVIKRDGRKEPVRFDKITARLKKLSYGLSKEHCDPVLVAQKVCAGVYKGVTTTQLDELAAETAAAMTVNHPDYALLAGR 80 (810)
Q Consensus 1 ~~v~krdG~~e~~~~~ki~~~i~~~~~~l~~~~v~~~~i~~~~~~~~~~~itt~ei~~~~~~~a~~~~~~~p~y~~lA~r 80 (810)
|+|+||||++|++|.+||.++|+++|+|| +.+|+++++.++...+++|||++||+++++++|++|+..||||+++|||
T Consensus 149 ~~v~~~~g~~~~l~~ekL~~lI~~a~~gL--envn~d~Lv~kt~r~LydGIttkEL~~aLI~~a~~~~~~~p~y~~~Aar 226 (965)
T PRK07207 149 LNVTLDDGVRRPLDMARLRALIEEACEGL--EAVDAEPILAETLKNLYDGVPMDEVYKALILAARTLIEKEPNYSYVTAR 226 (965)
T ss_pred eEEEeccCccccCCHHHHHHHHHHHhccc--ccCCHHHHHHHHHhhhcCCCCHHHHHHHHHHHHHHhcccCCCHHHHHHH
Confidence 57999999999999999999999999999 4699999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHhhhh--------hhHHHHHHHHHhh--hhcCccccCcchHHHHHHHhcHHHHHhhhcccccCCCChhhHHH
Q 003575 81 VAVSNLHKITKNS--------FSETIKDMYNYYN--KRSGKKASLVADDVYEIIMKNAACLDGAIIYDRDFDFDYFGFKT 150 (810)
Q Consensus 81 l~~~~l~k~~~~~--------~~~~~~~~~~~~~--~~~~~~~~l~~~~~~~~~~~~~~~l~~~i~~~rd~~~~y~g~~~ 150 (810)
|++.+|||++.+. +.+....+.+++. .+.|+..++++++++++ ++++|+++|+++||+.|+|+|+++
T Consensus 227 l~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~l~~~i~~~rd~~f~y~g~~~ 303 (965)
T PRK07207 227 LLLDTLRREALGFLGVPEEVTQAEMATRYAEYFPAFIKKGIEAELLDPKLAQF---DLERLGAALDPERDLQFTYLGLQT 303 (965)
T ss_pred HHHHHHHHHHHhhccccccchhhHHHHHHHHHHHHHHHhccchhhhhHHHHHh---hHHHHHHHhhHHHhCCCCHHHHHH
Confidence 9999999998641 1122222222211 14688889999988764 899999999999999999999999
Q ss_pred HHHhhccccCCcccCCHHHHHHHHHhhhccC---ChHHHHHHHHHHhcCceecCCccccccCCCCCCCcccccccccCCC
Q 003575 151 LERSYLLKMDSRVVERPQHMLMRVSVGIHKD---DTDSALKTYHLMSQHWFTHATPTLFNAGTPQPQLSSCFLLCMKDDS 227 (810)
Q Consensus 151 l~~~Yllk~~g~~~E~pq~~~~RVA~~l~~~---~~~~~~~~y~~ls~~~~~~atP~l~naGt~~~~lsSCfl~~~~~DS 227 (810)
|+++||+|.+|.++|+||++|||||++||.. +.+++++||++||+++|+||||||+|+||+++|||||||+++ +||
T Consensus 304 l~~rYllk~~~~~~E~pq~~~mRVA~~la~~e~~~~~~a~~fy~~ls~~~~~~aTPtl~NaGt~~~qlsSCfl~~v-~Ds 382 (965)
T PRK07207 304 LYDRYFLHVDGTRIELPQAFFMRVAMGLALNEIDREARAIEFYNLLSSFDFMSSTPTLFNSGTLRPQLSSCYLTTV-PDD 382 (965)
T ss_pred HHHhhcccCCCCeeecHHHHHHHHHHHHHHhccccHHHHHHHHHHHHcCCeecCCHHHhcCCCCCCCeeeeEeCCC-ccc
Confidence 9999999977889999999999999999963 458999999999999999999999999999999999999987 799
Q ss_pred hHHHHHHHHHHHHHHHhcCCcceeeeeecCCCCcccCCCCCCCCcccHHHHHHHHHHHHhhCCCcccCceEEeecCCccc
Q 003575 228 IEGIYDTLKKCAIISKSAGGIGLSIHNIRASGSYIHGTNGSSNGIVPMLQVFNDTARYVDQGGGKRKGAFAIYLEPWHAD 307 (810)
Q Consensus 228 ~~~I~~~~~~~a~isk~ggGiG~~~s~iR~~Gs~I~g~~g~ssG~vp~lk~~~~~~~~v~qgG~~Rrga~~~yl~~wH~D 307 (810)
++|||++++++|+++|+|||||+|||+|||+|++|+|++|.|+|||||||+||+++.+|+||| +|+||+|+||++||||
T Consensus 383 l~~I~~~~~~~a~lsk~gGGiG~~~s~lR~~Gs~I~g~~g~ssGvvpflk~~n~~~~~v~QgG-~R~GA~~vyL~~wH~D 461 (965)
T PRK07207 383 LDGIYEAIKDNALLSKFAGGLGNDWTPVRALGSHIKGTNGKSQGVVPFLKVVNDTAVAVNQGG-KRKGAVCAYLETWHLD 461 (965)
T ss_pred HHHHHHHHHHHHHHHhcCCeeeecccccCCCCCccCCCCCCCCChhHHHHHHHHHHHHHHcCC-cCccceeeEecCCCcc
Confidence 999999999999999999999999999999999999999999999999999999999999999 8999999999999999
Q ss_pred HHHHHHhhhhcCcccccccccceecccCHHHHHHHhcCCceEEecCCCCCCchhhhhhhHHHHHHHHHHcC-----ceeE
Q 003575 308 IFEFLDLRKNQGKEECRARDLFYALWVPDLFMERVRDDGKWSLFCPSDASGLADSWGIEFEHLYSQYEEEG-----RAKM 382 (810)
Q Consensus 308 I~~Fl~~K~~~g~e~~r~~~l~~sv~ipD~Fm~rv~~~~~w~Lf~P~~~~~L~~~~g~eF~~~Y~~~e~~~-----~~~~ 382 (810)
|++||++|+++|++++|++++|+||||||+||+||++|++|+||+|+++|+|.++||++|+++|++||+.+ ..++
T Consensus 462 I~eFL~lk~~~gde~~r~~~l~~av~ipD~FM~rv~~d~~w~Lf~P~~~~~L~~~yG~~f~~~Y~~~e~~~~~g~~~~~~ 541 (965)
T PRK07207 462 IEEFLELRKNTGDDRRRTHDMNTANWIPDLFMKRVMEDGEWTLFSPSEVPDLHDLFGKAFEEAYTAYEAKAARGEIKLFK 541 (965)
T ss_pred HHHHHHHhhccCchhhHhhcCchhhccCHHHHHHHHcCCCEEEecCcccccHHhhhhhHHHHHHHHHHHhcccCCcceee
Confidence 99999999999999999999999999999999999999999999999999999999999999999999853 3579
Q ss_pred EEeHHHHHHHHHHHHHhhCCceeEechhhhhhCCCCCCCeEEeecCCccccccCCCCCceeeeccccCchhhhhccCCcc
Q 003575 383 VISARKLWFEILNSQIETGTPYMLFKDSCNRKSNQQNLGTIKSSNLCTEIVEFSSPEETAVCNLASIALPRYVREKGVPV 462 (810)
Q Consensus 383 ~v~Ar~l~~~I~~~~~etG~P~i~f~D~~Nr~~~~~~~g~I~~sNlC~EI~~~~~~~e~~~CNL~SInL~~~v~~~~~~~ 462 (810)
+|+||+||++|++++|+||+|||+|+|+||+++|++|.|+|++||||+||+|+++++|+++|||+||||++||.+.
T Consensus 542 ~v~Ar~Lw~~I~~~~~eTG~P~i~fkD~~N~~~~~~~~g~I~~SNlCtEI~l~~~~~e~avCNLgSINL~~~v~~~---- 617 (965)
T PRK07207 542 KIPAVDLWRKMLSMLFETGHPWITFKDPCNLRSPQQHVGVVHSSNLCTEITLNTSDDEIAVCNLGSVNLVAHIKDG---- 617 (965)
T ss_pred EeeHHHHHHHHHHHHHHhCCCeeehhHHHHhcCCcccCCeEeecCCCcceeecCCCcceeeeeccceeHHHHhhCC----
Confidence 9999999999999999999999999999999999999999999999999999999999999999999999999641
Q ss_pred ccccccccccCCCCCccCCHHHHHHHHHHHHHHHHHHHhcCCCChHHHHHHhhccCCceeecchHHHHHHHcCCCCCCHH
Q 003575 463 QSNVSKLVGSRDSKNRLFDFERLAEVTKIITENLNKIIDVNHYPIETTRRSNLRHRPIGIGIQGLADTFILLGLPFESPE 542 (810)
Q Consensus 463 ~~~~~~~~g~~~~~~~~fD~~~l~~~v~~avr~LD~vId~~~~p~~~~~~~~~~~R~iGlGv~Glad~L~~~gi~y~S~e 542 (810)
..|||+.|+++|+++||+||+|||+|.||+|+++++|+++|+||||+|||||+|+++|++|+|+|
T Consensus 618 ---------------~~~D~~~l~~~v~~avr~LDnVID~n~yp~~~a~~~n~~~R~IGLGvmGlad~L~~lgi~Y~S~e 682 (965)
T PRK07207 618 ---------------AKLDHEKLKRTVSTAMRMLDNVIDINYYAVPKARNSNLRHRPVGLGIMGFQDALYLLRIPYASDE 682 (965)
T ss_pred ---------------CcCCHHHHHHHHHHHHHhccceeeCCCCcHHHHHHHhhccCCccccHHHHHHHHHHCCCCCCCHH
Confidence 26999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCCCCCCccccCccccccccCC-----------CCCcccHHHHHHHHHhcC
Q 003575 543 AQQLNKDIFETIYYHALKASAELAVKDGPYETYFGSPMSKGILQVDMWNIT-----------PSDRWDWSSLREMISKNG 611 (810)
Q Consensus 543 a~~l~~~i~e~i~~~a~~aS~eLAke~G~~~~f~~S~~~~G~l~~d~~~~~-----------~~~~~dW~~Lr~~i~~~G 611 (810)
|++|+++|||.|+|+|++||++||+|+|+||.|++|+|++|++|+|.|+.. .+..+||++||++|++||
T Consensus 683 A~~l~~~i~e~i~y~A~~aS~eLA~E~G~~~~f~gS~~~~g~~~~d~~~~~~~~r~~~~~~~~~~~~dW~~Lr~~i~~~G 762 (965)
T PRK07207 683 AVEFADRSMEAVSYYAIWASTELAEERGRYSSYEGSLWSRGILPIDSLKLLAEARGGYLEVDRSSTLDWDALRARIKKHG 762 (965)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCCCCcChhhcCccchhhhhhhhhhhcccccccccchhhHHHHHHHHHHhC
Confidence 999999999999999999999999999999999999999999999988632 234679999999999999
Q ss_pred ccccceeccCCCcchhhhcCCCccccccccceeeEEcccCceEEeCHHHHHHHHHcCCChHHHHHHHHhcCCccccccCC
Q 003575 612 VRNSLLVAPMPTASTSQILGNNECFEPYTSNIYTRRVLSGEFIVVNKHLLKDLTELGLWSHALKTKIIYENGSVSKISEI 691 (810)
Q Consensus 612 ~RNs~l~AiaPT~stS~i~g~s~gieP~~s~~y~r~~~~g~~~~vn~~l~~~l~~~g~~~~~~~~~i~~~~Gsv~~~~~l 691 (810)
+|||+++|||||+|||+|+|+|+||||+|+|+|.|++.+|+|+++|++|+++|+++|+|++++++++...+||+|+++.+
T Consensus 763 ~RNs~l~AiAPT~S~S~i~g~s~giEP~~s~~y~r~~~~g~f~~vn~~l~~~l~~~~~~~~~~~~~i~~~~Gsvq~i~~i 842 (965)
T PRK07207 763 MRNSNCMAIAPTATISNIIGVSQSIEPTYQNLYVKSNLSGEFTVVNPYLVRDLKARGLWDEVMVNDLKYFDGSLQRIDRI 842 (965)
T ss_pred ccccceeccCChHHHHHHhCCCCccCcCchhhheeeccCCceEEeCHHHHHHHHHcCCChHHHHHHHHhcCCCccCCCCC
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred chHHHhhccccccCChHHHHHHHHHhCcccccccceeEeeCCCChHHHHHHHHHHHHcCCceEEEEecCccccccccccc
Q 003575 692 PEELKAIYKTVWEIKQKTLVDMAADRGCYIDQSQSLNIHMEQPDHGKLTSLHFYAWSKGMKTGMYYLRTRAAADAIKFTV 771 (810)
Q Consensus 692 p~~~k~~y~tA~ei~~~~~i~~~a~~Q~~vDqs~S~nl~~~~~~~~~l~~~~~~Awk~GlKt~~yY~r~~~~~~~~~~~~ 771 (810)
|++++++|+|||||+|+++|+|+|+||||||||||+|||+++++.++|.++|++||++|||| +||+|+++++++++|||
T Consensus 843 p~~~k~~f~tA~ei~~~~~I~~~A~rQ~~IDqsqS~nl~~~~~t~~~l~~~y~~Aw~~GlKt-~YY~Rs~~~~~~~~~t~ 921 (965)
T PRK07207 843 PADLKALYATAFEVDPRWLVEAASRRQKWIDQAQSLNLYMAGASGKKLDETYKLAWLRGLKT-TYYLRTLGATHVEKSTV 921 (965)
T ss_pred ChhHHhhcccCccCCHHHHHHHHHHHcCcchhhhcCCcCCCCCCHHHHHHHHHHHHHcCCCe-EEEEecccccchhhhcc
Confidence 99999999999999999999999999999999999999999889999999999999999999 89999999999999999
Q ss_pred cccccccccccCc------cchh-hhhhcccccccCCccccccCC
Q 003575 772 DTSVLNNEKANRA------DNDV-EANLAQVVCSLKNQEECMACG 809 (810)
Q Consensus 772 ~~~~~~~~~~~~~------~~~~-~~~~~~~~~~~~~~~~c~~c~ 809 (810)
+...++...+... ...+ ..+..+.+|++++|+ ||+|+
T Consensus 922 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~ 965 (965)
T PRK07207 922 NTGALNAVSSGGGGAGGAAAAAAAPPAADPKACSIDDPD-CEACQ 965 (965)
T ss_pred ccccccccCCCccccccccccccCCCCCCCCcccCCCCC-CcccC
Confidence 9766544333210 0000 012336799998885 99996
No 5
>PRK12365 ribonucleotide-diphosphate reductase subunit alpha; Provisional
Probab=100.00 E-value=2.5e-195 Score=1763.91 Aligned_cols=777 Identities=38% Similarity=0.641 Sum_probs=718.3
Q ss_pred CeEEccCCceeccChhHHHHHHHHHHhcCCCCCCCHHHHHHHHHhhcCCCCCHHHHHHHHHHHHHhhccCCCChHHHHHH
Q 003575 1 MYVIKRDGRKEPVRFDKITARLKKLSYGLSKEHCDPVLVAQKVCAGVYKGVTTTQLDELAAETAAAMTVNHPDYALLAGR 80 (810)
Q Consensus 1 ~~v~krdG~~e~~~~~ki~~~i~~~~~~l~~~~v~~~~i~~~~~~~~~~~itt~ei~~~~~~~a~~~~~~~p~y~~lA~r 80 (810)
++|+||||++|+||++||+++|+++|+||+ +.+++..++.++...++|||||+||++++|++|++|++.||||++||||
T Consensus 236 ~~v~~~~g~~~~~~~~~~~~~~~~~~~~l~-~~~~~~~~~~~~~~~~~~~~~~~e~~~~~~~~a~~~~~~~p~y~~~Aar 314 (1046)
T PRK12365 236 YEVLSKDGSTYTMTKSQLLAHFAWACSRFP-ETTDAALLADMAFANFYSGIKESEVVLACIMAARANIEKEPDYAFVAAE 314 (1046)
T ss_pred eEEEEeCCccccCCHHHHHHHHHHHhcccc-ccCcHHHHHHHHHhccCCCCCHHHHHHHHHHHHHHhCccCCCHHHHHHH
Confidence 469999999999999999999999999996 4688899999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHhhh------hhhHHHHHHHHHhhhhcCccccCcchHHHHHHHhcHHHHHhhhcccccCCCChhhHHHHHHh
Q 003575 81 VAVSNLHKITKN------SFSETIKDMYNYYNKRSGKKASLVADDVYEIIMKNAACLDGAIIYDRDFDFDYFGFKTLERS 154 (810)
Q Consensus 81 l~~~~l~k~~~~------~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~l~~~i~~~rd~~~~y~g~~~l~~~ 154 (810)
|++++|||++.+ .|.+.+..++.... ..|.. +.+.++ +...++++|+++|+++||+.|+|+|+++|+++
T Consensus 315 l~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~-~~~~~~---~~~~~~~~l~~~i~~~rd~~f~y~g~~~l~~~ 389 (1046)
T PRK12365 315 LLLDVVYKEALGKSKYDEDLEEAHKDHFKRYI-LEGDT-YRLNPE---LKHYDLDALAEALDLSRDLQFSYMGVQNLYDR 389 (1046)
T ss_pred HHHHHHHHHHhcccccchhHHHHHHHHHHHHH-hcCch-hhhHHH---hhhhhHHHHHHHHhHHhhCCCCHHHHHHHHHh
Confidence 999999999965 33333333332211 12211 333333 34559999999999999999999999999999
Q ss_pred hccccCCcccCCHHHHHHHHHhhhcc----CChHHHHHHHHHHhcCceecCCccccccCCCCCCCcccccccccCCChHH
Q 003575 155 YLLKMDSRVVERPQHMLMRVSVGIHK----DDTDSALKTYHLMSQHWFTHATPTLFNAGTPQPQLSSCFLLCMKDDSIEG 230 (810)
Q Consensus 155 Yllk~~g~~~E~pq~~~~RVA~~l~~----~~~~~~~~~y~~ls~~~~~~atP~l~naGt~~~~lsSCfl~~~~~DS~~~ 230 (810)
||+|.+|+++|+||++|||||++||. ++.+++++||++||+++|+||||||+|+||+++|||||||+++ +||++|
T Consensus 390 Yl~~~~~~~~E~pq~~~mRVA~~la~~e~~~~~~~a~~fy~~ls~~~f~~atPtl~NaGt~~~qlsSCfl~~v-~Dsl~~ 468 (1046)
T PRK12365 390 YFNHHEGRRLETPQIFWMRVSMGLALNEGQDKTSWAITFYNLLSTFRYTPATPTLFNSGMRHSQLSSCYLSTV-QDDLVH 468 (1046)
T ss_pred hCcCCCCCcccCHHHHHHHHHHHHHHhcccccHHHHHHHHHHHHcCCeecCChhhhcCCCCCCCceeeEeCCC-cccHHH
Confidence 99998888999999999999999985 3456899999999999999999999999999999999999997 799999
Q ss_pred HHHHHHHHHHHHHhcCCcceeeeeecCCCCcccCCCCCCCCcccHHHHHHHHHHHHhhCCCcccCceEEeecCCcccHHH
Q 003575 231 IYDTLKKCAIISKSAGGIGLSIHNIRASGSYIHGTNGSSNGIVPMLQVFNDTARYVDQGGGKRKGAFAIYLEPWHADIFE 310 (810)
Q Consensus 231 I~~~~~~~a~isk~ggGiG~~~s~iR~~Gs~I~g~~g~ssG~vp~lk~~~~~~~~v~qgG~~Rrga~~~yl~~wH~DI~~ 310 (810)
||++++++|+++|+|||||+|||+|||+|++|+|++|.|+|||||||+||+++.+|+||| +||||+|+||++|||||++
T Consensus 469 I~~~~~~~a~lsk~gGGiG~~~s~iR~~Gs~I~g~~g~ssG~vpflk~~n~~~~~v~QgG-~R~GA~~~yL~~wH~DI~e 547 (1046)
T PRK12365 469 IYKVISDNAMLSKWAGGIGNDWTAVRATGALIKGTNGKSQGVIPFIKVANDTAVAVNQGG-KRKGAVCVYLEVWHLDYED 547 (1046)
T ss_pred HHHHHHHHHHHHhcCCceeecccccCCCCCccCCCCCCCCChHhHHHHHHHHHHHHHhCC-cccCceeEEEeCCCccHHH
Confidence 999999999999999999999999999999999999999999999999999999999999 8999999999999999999
Q ss_pred HHHhhhhcCcccccccccceecccCHHHHHHHhcCCceEEecCCCCCCchhhhhhhHHHHHHHHHHc---C--ceeEEEe
Q 003575 311 FLDLRKNQGKEECRARDLFYALWVPDLFMERVRDDGKWSLFCPSDASGLADSWGIEFEHLYSQYEEE---G--RAKMVIS 385 (810)
Q Consensus 311 Fl~~K~~~g~e~~r~~~l~~sv~ipD~Fm~rv~~~~~w~Lf~P~~~~~L~~~~g~eF~~~Y~~~e~~---~--~~~~~v~ 385 (810)
||++|+++|++.+|++++|+||||||+||+||++|++|+||+|+++|+|.++||++|+++|++||+. | ..+++|+
T Consensus 548 FL~lk~~~g~e~~r~~~l~~~v~ipD~FM~~v~~~~~w~Lf~P~~~~~l~~~yG~~f~~~Y~~ye~~~~~g~~~~~~~v~ 627 (1046)
T PRK12365 548 FLELRKNTGDERRRTHDINTASWIPDLFFKRLQQKGTWTLFSPDDVPGLHEAYGEEFEKLYEEYERKVDTGEIRLYKKVE 627 (1046)
T ss_pred HHHHhhhcccHHHHhhccchhhccCHHHHHHHHcCCCeEEECccccccHHHHhchHHHHHHHHHHHhhhcCCcceeeEEe
Confidence 9999999999999999999999999999999999999999999999999999999999999999975 4 3569999
Q ss_pred HHHHHHHHHHHHHhhCCceeEechhhhhhCCCCCCCeEEeecCCccccccCCCCCceeeeccccCchhhhhccCCccccc
Q 003575 386 ARKLWFEILNSQIETGTPYMLFKDSCNRKSNQQNLGTIKSSNLCTEIVEFSSPEETAVCNLASIALPRYVREKGVPVQSN 465 (810)
Q Consensus 386 Ar~l~~~I~~~~~etG~P~i~f~D~~Nr~~~~~~~g~I~~sNlC~EI~~~~~~~e~~~CNL~SInL~~~v~~~~~~~~~~ 465 (810)
||+||++|++++|+||+|||+|+|+||++||++|.|+|++||||+||+|+++++++++|||+||||++||.+
T Consensus 628 Ar~Lw~~I~~~~~eTG~P~i~f~D~~N~~~~~~~~G~I~~SNlC~Ei~l~~~~~e~~vCNL~SiNL~~~v~~-------- 699 (1046)
T PRK12365 628 AEDLWRKMLSMLYETGHPWMTFKDPSNIRSAQDHKGVVRCSNLCTEILLNCSETETAVCNLGSINLVEHIVN-------- 699 (1046)
T ss_pred HHHHHHHHHHHHHHhCCCeEEehhhhhhcCCCCcCCeeEecCCCcceeecccCCcCceeecchhhHHHhccc--------
Confidence 999999999999999999999999999999999999999999999999999999999999999999999854
Q ss_pred cccccccCCCCCccCCHHHHHHHHHHHHHHHHHHHhcCCCChHHHHHHhhccCCceeecchHHHHHHHcCCCCCCHHHHH
Q 003575 466 VSKLVGSRDSKNRLFDFERLAEVTKIITENLNKIIDVNHYPIETTRRSNLRHRPIGIGIQGLADTFILLGLPFESPEAQQ 545 (810)
Q Consensus 466 ~~~~~g~~~~~~~~fD~~~l~~~v~~avr~LD~vId~~~~p~~~~~~~~~~~R~iGlGv~Glad~L~~~gi~y~S~ea~~ 545 (810)
..|||+.|+++|+++||+||||||+|.||+++++++|+++|+||||+|||||+|+++|+||+|+||++
T Consensus 700 ------------~~~D~~~l~~~v~~avr~LDnVID~n~yP~~~a~~~n~~~R~IGLGvmGlad~L~~~gi~Y~S~ea~~ 767 (1046)
T PRK12365 700 ------------DGLDEEKLSETISIAIRILDNVIDINFYPTKEAKEANLAHRAIGLGVMGFQDALYKLNISYASQEAVE 767 (1046)
T ss_pred ------------ccCCHHHHHHHHHHHHHHHHHHHhcccCcHHHHHHHHHhcCCcccchhhHHHHHHHcCCCCCCHHHHH
Confidence 26999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHcCCCCCCCCCccccCccccccccCC------------CCCcccHHHHHHHHHhcCcc
Q 003575 546 LNKDIFETIYYHALKASAELAVKDGPYETYFGSPMSKGILQVDMWNIT------------PSDRWDWSSLREMISKNGVR 613 (810)
Q Consensus 546 l~~~i~e~i~~~a~~aS~eLAke~G~~~~f~~S~~~~G~l~~d~~~~~------------~~~~~dW~~Lr~~i~~~G~R 613 (810)
|+++|||+|+|+|++||++||+|+|+||.|++|+|++|+||+|.|... ++..++|++||++|++||+|
T Consensus 768 ~~~~i~e~i~~~A~~aS~eLA~e~G~y~~f~~S~~~~g~l~~d~~~~~~~~~~~~~~~~~~~~~~~W~~Lr~~i~~~GlR 847 (1046)
T PRK12365 768 FADYSSELIAYYAILASSLLAKERGTYSSYKGSKWDRGYLPIDTIELLKEYRGEANLLMDTSSRKDWEPVRSLIKEYGMR 847 (1046)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhCCCCCCCcChhhhhhcchhhhhhhhhhhccccccccccchhhHHHHHHHHHHhCcc
Confidence 999999999999999999999999999999999999999999988631 22367999999999999999
Q ss_pred ccceeccCCCcchhhhcCCCccccccccceeeEEcccCceEEeCHHHHHHHHHcCCChHHHHHHHHhcCCccccccCCch
Q 003575 614 NSLLVAPMPTASTSQILGNNECFEPYTSNIYTRRVLSGEFIVVNKHLLKDLTELGLWSHALKTKIIYENGSVSKISEIPE 693 (810)
Q Consensus 614 Ns~l~AiaPT~stS~i~g~s~gieP~~s~~y~r~~~~g~~~~vn~~l~~~l~~~g~~~~~~~~~i~~~~Gsv~~~~~lp~ 693 (810)
||+++|||||||||+|+|+|+||||+|+|+|.|++.+|+|.++|++|+++|+++|+|++++++.|..++||||+++.+|+
T Consensus 848 Ns~l~AiaPT~S~S~i~g~s~giEP~~s~~y~r~~~~G~~~~~n~~l~~~l~~~~~~~~~~~~~i~~~~Gsvq~i~~ip~ 927 (1046)
T PRK12365 848 NSQLMAIAPTATISNIIGVTQSIEPTYKHLFVKSNLSGEFTIPNVYLIEKLKKLGIWDADMLDDLKYFDGSLLEIERIPD 927 (1046)
T ss_pred hhcceeeCCCchHHHHhCCCCCcccchhhhheeeccCCeEEEecHHHHHHHHHcCCChHHHHHHHHHhcCCcccccCCch
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHhhccccccCChHHHHHHHHHhCcccccccceeEeeCCCChHHHHHHHHHHHHcCCceEEEEecCccccccccccccc
Q 003575 694 ELKAIYKTVWEIKQKTLVDMAADRGCYIDQSQSLNIHMEQPDHGKLTSLHFYAWSKGMKTGMYYLRTRAAADAIKFTVDT 773 (810)
Q Consensus 694 ~~k~~y~tA~ei~~~~~i~~~a~~Q~~vDqs~S~nl~~~~~~~~~l~~~~~~Awk~GlKt~~yY~r~~~~~~~~~~~~~~ 773 (810)
++|++|+|||||+|+++|+|+|+||||||||||+|||+++++.++|.++|++||++|||| |||+|+++++++++|||+.
T Consensus 928 ~~k~~y~tA~ei~~~~~I~~~A~rQk~IDqs~S~nl~~~~~~~~~l~~~y~~Aw~~GlKt-~YY~Rt~~a~~~~~~t~~~ 1006 (1046)
T PRK12365 928 HLKKIFLTAFEIEPEWIIECASRRQKWIDMGQSLNLYLAEPDGKKLSNMYLTAWKKGLKT-TYYLRSSAATSVEKSFVDI 1006 (1046)
T ss_pred HHHhhcCcHHhCCHHHHHHHHHHHcCccchhhcCCcCCCCCCHHHHHHHHHHHHHcCCCe-EEEeeccccchhhhhcccC
Confidence 999999999999999999999999999999999999999888999999999999999999 8999999999999999999
Q ss_pred ccccccccc---C--ccch--hhhhhcccccccCCccccccCC
Q 003575 774 SVLNNEKAN---R--ADND--VEANLAQVVCSLKNQEECMACG 809 (810)
Q Consensus 774 ~~~~~~~~~---~--~~~~--~~~~~~~~~~~~~~~~~c~~c~ 809 (810)
+. +...++ . .+.. .-.+..+.+|++ +| .||+|+
T Consensus 1007 ~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~-~~~~~~ 1046 (1046)
T PRK12365 1007 NK-RGIQPRWMKNKSASTSIVVERAKKTPVCSL-EE-GCESCQ 1046 (1046)
T ss_pred Cc-ccCCCCcccccccccccCCCcccCCCcccC-CC-CCcccC
Confidence 86 333321 1 1110 111233579999 44 399996
No 6
>PRK08447 ribonucleotide-diphosphate reductase subunit alpha; Validated
Probab=100.00 E-value=1.8e-184 Score=1617.46 Aligned_cols=697 Identities=38% Similarity=0.629 Sum_probs=649.8
Q ss_pred CeEEccCCceeccChhHHHHHHHHHHhcCCCCCCCHHHHHHHHHhhcCCCCCHHHHHHHHHHHHHhhc-cCCCChHHHHH
Q 003575 1 MYVIKRDGRKEPVRFDKITARLKKLSYGLSKEHCDPVLVAQKVCAGVYKGVTTTQLDELAAETAAAMT-VNHPDYALLAG 79 (810)
Q Consensus 1 ~~v~krdG~~e~~~~~ki~~~i~~~~~~l~~~~v~~~~i~~~~~~~~~~~itt~ei~~~~~~~a~~~~-~~~p~y~~lA~ 79 (810)
|+|+||||++|+|+++||+++++++|+||+ .+|+.+|+.++..+++|||||+||++++|++|++|+ .+||||.++||
T Consensus 2 ~~v~k~~g~~e~~~~~ki~~~~~~~~~~l~--~~~~~~~~~~~~~~~~~~~t~~el~~~~i~~a~~~~~~~~pdy~~~Aa 79 (789)
T PRK08447 2 ITVVKRNGRIEPLDISKIQKYTSDAVEGLE--GVSQSELEVDAKIQFRDGITTEEIQQTLIKTAVDKIDIDRPNWTFVAA 79 (789)
T ss_pred ceEEeeCCccccCCHHHHHHHHHHHhcCCc--cCCHHHHHHHHHhhccCCCCHHHHHHHHHHHHHHhCCccCccHHHHHH
Confidence 579999999999999999999999999996 499999999999999999999999999999999999 59999999999
Q ss_pred HHHHHHHHHHhh--hhhhHHHHHHHHHhhhhcCccccCcchHHHHHHHhcHHHHHhhhcccccCCCChhhHHHHHHhhcc
Q 003575 80 RVAVSNLHKITK--NSFSETIKDMYNYYNKRSGKKASLVADDVYEIIMKNAACLDGAIIYDRDFDFDYFGFKTLERSYLL 157 (810)
Q Consensus 80 rl~~~~l~k~~~--~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~l~~~i~~~rd~~~~y~g~~~l~~~Yll 157 (810)
||++++|||++. ..| ..++.++. .+...+.+..++++ ..++++|+++|+++||+.|+|+|+++|+++||+
T Consensus 80 Rl~~~~l~k~~~~~~~~----~~~~~~~~--~~~~~~~~~~~~~~--~~~~~~l~~~i~~~rd~~f~y~g~~~l~~rYll 151 (789)
T PRK08447 80 RLFLYDLYHKVSGFTGY----NHLKEYFE--KGEKEGRILLGLKE--KYDLDDLNAYIKPERDLQFNYLGIKTLYDRYLI 151 (789)
T ss_pred HHHHHHHHHHhhccccH----HHHHHHHH--HHhhcCccchhhhc--cccHHHHHHHhCHHHhcCCCHHHHHHHHHhhCc
Confidence 999999999994 333 23333332 23334556655543 247999999999999999999999999999999
Q ss_pred cc-CCcccCCHHHHHHHHHhhhccC---ChHHHHHHHHHHhcCceecCCccccccCCCCCCCcccccccccCCChHHHHH
Q 003575 158 KM-DSRVVERPQHMLMRVSVGIHKD---DTDSALKTYHLMSQHWFTHATPTLFNAGTPQPQLSSCFLLCMKDDSIEGIYD 233 (810)
Q Consensus 158 k~-~g~~~E~pq~~~~RVA~~l~~~---~~~~~~~~y~~ls~~~~~~atP~l~naGt~~~~lsSCfl~~~~~DS~~~I~~ 233 (810)
|. +|+++|+||++|||||++||.. +.+++++||++||+++|+||||||+|||++++|||||||+.+ +||++||++
T Consensus 152 k~~~g~~~E~pq~~~mrVA~~la~~e~~~~~~a~~fy~~ls~~~~~~aTPtL~Nagt~~~qlsSCFl~~v-~Dsl~~I~~ 230 (789)
T PRK08447 152 KDRNNNPIELPQHMFMAIAMFLAQNELDPQKWAKKFYDVISKFEVMLATPTLSNARTTRHQLSSCYIGST-PDNIEGIFD 230 (789)
T ss_pred cCCCCCEeeCHHHHHHHHHHHHHhhccccHHHHHHHHHHHHcCCeecCCccccccCCCCCCeeeeEeCCC-CCCHHHHHH
Confidence 94 6888999999999999999974 457899999999999999999999999999999999999886 899999999
Q ss_pred HHHHHHHHHHhcCCcceeeeeecCCCCcccCCCCCCCCcccHHHHHHHHHHHHhhCCCcccCceEEeecCCcccHHHHHH
Q 003575 234 TLKKCAIISKSAGGIGLSIHNIRASGSYIHGTNGSSNGIVPMLQVFNDTARYVDQGGGKRKGAFAIYLEPWHADIFEFLD 313 (810)
Q Consensus 234 ~~~~~a~isk~ggGiG~~~s~iR~~Gs~I~g~~g~ssG~vp~lk~~~~~~~~v~qgG~~Rrga~~~yl~~wH~DI~~Fl~ 313 (810)
+++++|+++|+|||||+|||+|||+||+|+|++|.|+|||||||+||+++.+|+||| +||||+|+||++|||||++||+
T Consensus 231 ~~~~~a~isk~gGGiG~~~s~iR~~Gs~I~g~~g~ssGvvp~~k~~n~~~~~v~QgG-~RrGA~avyL~~wHpDI~~FL~ 309 (789)
T PRK08447 231 SYKEMALLSKYGGGIGWDWSKVRAMGSYIDGHKNAAGGIIPFLKITNDIAIAVDQLG-TRKGAIAVYLEPWHMDISDFID 309 (789)
T ss_pred HHHHHHHHHhcCCeEeecccccCCCCCccCCCCCCCCChhhHHHHHHHHHHHHHhCC-ccccceEEEEeCCCccHHHHHH
Confidence 999999999999999999999999999999999999999999999999999999999 8999999999999999999999
Q ss_pred hhhhcCcccccccccceecccCHHHHHHHhcCCceEEecCCCCCCchhhhhhhHHHHHHHHHHc-CceeEEEeHHHHHHH
Q 003575 314 LRKNQGKEECRARDLFYALWVPDLFMERVRDDGKWSLFCPSDASGLADSWGIEFEHLYSQYEEE-GRAKMVISARKLWFE 392 (810)
Q Consensus 314 ~K~~~g~e~~r~~~l~~sv~ipD~Fm~rv~~~~~w~Lf~P~~~~~L~~~~g~eF~~~Y~~~e~~-~~~~~~v~Ar~l~~~ 392 (810)
+|+++|++++|++++|+||||||+||+||++|++|+||+|+++++|.++||++|+++|.+||++ ++.+++|+||+||++
T Consensus 310 ~K~~~g~e~~r~~~l~~sv~ipD~FM~~v~~d~~w~Lf~P~~~~~l~~~yG~~f~~~Y~~~e~~~~~~~~~V~AreLw~~ 389 (789)
T PRK08447 310 LRKNSGEERRRAHDLFPALWINDLFMKRVEEDAMWTLFDPYECKDLTELYGEEFEKRYLEYEKDEKIIKEYINAKELWKK 389 (789)
T ss_pred HhhcccchhhhhhcCeeeeeeCHHHHHHHHcCCCEEEecCCccchhhhhhChHHHHHHHHHHhccCeeeEEEeHHHHHHH
Confidence 9999999999999999999999999999999999999999999999999999999999999984 567899999999999
Q ss_pred HHHHHHhhCCceeEechhhhhhCCCCCCCeEEeecCCccccccCCCC---------------------------------
Q 003575 393 ILNSQIETGTPYMLFKDSCNRKSNQQNLGTIKSSNLCTEIVEFSSPE--------------------------------- 439 (810)
Q Consensus 393 I~~~~~etG~P~i~f~D~~Nr~~~~~~~g~I~~sNlC~EI~~~~~~~--------------------------------- 439 (810)
|++++|+||+|||+|+|+||++||++|.|+|++||||+||+|+++|+
T Consensus 390 I~~~~~eTG~Pyi~f~D~~Nr~np~~~~G~I~~SNlC~EI~q~~~p~~~~~~~~~~~~~~~~y~~~~~~~~~~~~~~~~~ 469 (789)
T PRK08447 390 ILTNYFETGLPFLCFKDNANRANPNAHAGIIRSSNLCTEIFQNTAPNHYKIKIEFEDGSIEFFEEEELVTVDSGITKKAK 469 (789)
T ss_pred HHHHHHHHCCceEEEhhhhhhcCCCCCCCeeeecccccccCCCCCccccccccccccccccccccccccccccccccccc
Confidence 99999999999999999999999999999999999999999988763
Q ss_pred -----------------------CceeeeccccCchhhhhccCCccccccccccccCCCCCccCCHHHHHHHHHHHHHHH
Q 003575 440 -----------------------ETAVCNLASIALPRYVREKGVPVQSNVSKLVGSRDSKNRLFDFERLAEVTKIITENL 496 (810)
Q Consensus 440 -----------------------e~~~CNL~SInL~~~v~~~~~~~~~~~~~~~g~~~~~~~~fD~~~l~~~v~~avr~L 496 (810)
++++|||+||||++|+ |++.|+++|+++||+|
T Consensus 470 ~~~~~~~~~~~~~~~~~~~~~~ge~~vCNLgSiNL~~~v-------------------------~~~~l~~~v~~avR~L 524 (789)
T PRK08447 470 KITSLDSLKGKKIYIVEKEKKDGKTAVCNLASINLSKIN-------------------------TKEDIERVVPIAIRML 524 (789)
T ss_pred ccccccccccccccccccccCCCCeeEEecHHHHHHHhc-------------------------CHHHHHHHHHHHHHHH
Confidence 6699999999999986 4589999999999999
Q ss_pred HHHHhcCCCChHHHHHHhhccCCceeecchHHHHHHHcCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCCCC
Q 003575 497 NKIIDVNHYPIETTRRSNLRHRPIGIGIQGLADTFILLGLPFESPEAQQLNKDIFETIYYHALKASAELAVKDGPYETYF 576 (810)
Q Consensus 497 D~vId~~~~p~~~~~~~~~~~R~iGlGv~Glad~L~~~gi~y~S~ea~~l~~~i~e~i~~~a~~aS~eLAke~G~~~~f~ 576 (810)
|||||+|.||+|+++++|+++|+||||+|||||+|+++|++|+|+||++|+++|||+|+|+|++||++||+|+|+||.|+
T Consensus 525 DnVID~n~yP~~~~~~~n~~~R~IGLGvmGlad~La~lgi~Y~S~eA~~~~~~i~e~i~y~A~~aS~eLAkErG~fp~f~ 604 (789)
T PRK08447 525 DNVIDLNFYPNRKVKATNLKSRAIGLGVMGEAQMLAEHKIAWGSKEHLEKIDEIMEQISYNAIDASSNLALEKGVYPDFE 604 (789)
T ss_pred HHHHhcccCChHHHHHHHhcCCCeeeeHHHHHHHHHHCCCCcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCCcC
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCccccCccccccccCCCC----------CcccHHHHHHHHHhcCccccceeccCCCcchhhhcCCCccccccccceeeE
Q 003575 577 GSPMSKGILQVDMWNITPS----------DRWDWSSLREMISKNGVRNSLLVAPMPTASTSQILGNNECFEPYTSNIYTR 646 (810)
Q Consensus 577 ~S~~~~G~l~~d~~~~~~~----------~~~dW~~Lr~~i~~~G~RNs~l~AiaPT~stS~i~g~s~gieP~~s~~y~r 646 (810)
+|+|++|+|++|.|+..+. ..++|++||++|++||+|||+++|||||||||+|+|+|+||||+|++.|.|
T Consensus 605 ~S~~~~G~~~~d~~~~~~~~~~~~~~~~~~~~dW~~L~~~I~k~GlRNs~l~AiAPTgS~S~i~g~S~gIEP~~s~~~~~ 684 (789)
T PRK08447 605 GSNWSKGIFPIDKANEEAKKLVERGGLFDSACDWEGLREKVKKDGMRNGYLMAIAPTSSISILVGTTQTIEPVYKRKWFE 684 (789)
T ss_pred cChhhcCccchhhhhchhhhhhcccccccchhhHHHHHHHHHHhCccccceeeeCChHHHHHHhCCCcCcCcccchheeE
Confidence 9999999999998875421 246999999999999999999999999999999999999999999999999
Q ss_pred EcccCceEEeCHHHHHHHHHcCCChHHHHHHHHhcCCccccccCCchHHHhhccccccCChHHHHHHHHHhCcccccccc
Q 003575 647 RVLSGEFIVVNKHLLKDLTELGLWSHALKTKIIYENGSVSKISEIPEELKAIYKTVWEIKQKTLVDMAADRGCYIDQSQS 726 (810)
Q Consensus 647 ~~~~g~~~~vn~~l~~~l~~~g~~~~~~~~~i~~~~Gsv~~~~~lp~~~k~~y~tA~ei~~~~~i~~~a~~Q~~vDqs~S 726 (810)
++.+|+|+++|++|. +++.++|+|||||+|+++|+|+|+||||||||||
T Consensus 685 ~~~~g~~~~~~p~L~-------------------------------~~~~~~y~tA~ei~~~~~I~~~A~rQk~IDQsiS 733 (789)
T PRK08447 685 ENLSGLIPVVVPNLS-------------------------------PETWQYYTPAYDLDQKDLIKAAAVRQKWIDQGQS 733 (789)
T ss_pred EeccceeEeeCCCCC-------------------------------hHHHHHhchHHhCCHHHHHHHHHHHhcccchhhc
Confidence 999999998888662 3345689999999999999999999999999999
Q ss_pred eeEeeC--CCChHHHHHHHHHHHHcCCceEEEEecCcccccc
Q 003575 727 LNIHME--QPDHGKLTSLHFYAWSKGMKTGMYYLRTRAAADA 766 (810)
Q Consensus 727 ~nl~~~--~~~~~~l~~~~~~Awk~GlKt~~yY~r~~~~~~~ 766 (810)
+|||++ .++.++|.++|++|||+|||| +||+|+++....
T Consensus 734 ~nl~~~~~~~t~~~l~~~y~~Awk~GlKt-~YY~Rt~~~~~~ 774 (789)
T PRK08447 734 LNIFLSLDKASGKYLNEIYTLAWKLGLKS-TYYLRSESPESE 774 (789)
T ss_pred CccccCCCCCCHHHHHHHHHHHHHcCCCE-EEEEeccchhhc
Confidence 999999 368999999999999999999 899999887643
No 7
>PHA02572 nrdA ribonucleoside-diphosphate reductase subunit alpha; Provisional
Probab=100.00 E-value=4.9e-182 Score=1598.05 Aligned_cols=701 Identities=29% Similarity=0.488 Sum_probs=658.1
Q ss_pred CeEEccCCceeccChhHHHHHHHHHHhcCCCCCCCHHHHHHHHHhhcCCCCCHHHHHHHHHHHHHhhcc-CCCChHHHHH
Q 003575 1 MYVIKRDGRKEPVRFDKITARLKKLSYGLSKEHCDPVLVAQKVCAGVYKGVTTTQLDELAAETAAAMTV-NHPDYALLAG 79 (810)
Q Consensus 1 ~~v~krdG~~e~~~~~ki~~~i~~~~~~l~~~~v~~~~i~~~~~~~~~~~itt~ei~~~~~~~a~~~~~-~~p~y~~lA~ 79 (810)
|+|+||||+.|+|+++||+++|+++|+|++ ||+.+|+.++..++++||||+||++++|++|++|++ .||||++|||
T Consensus 4 ~~v~kr~G~~e~~~~~k~~~~~~~~~~~~~---~~~~~l~~~~~~~~~~~~~~~e~~~~~~~~a~~~~~~~~pdy~~~Aa 80 (753)
T PHA02572 4 INVIKSSGVSQPFDLEKIHKVLEWACEGTG---VDPSELEENSKIQLRDGMTTKDIQEILIKSAADLISVEEPDYQYVAA 80 (753)
T ss_pred eEEEeeCCccccCCHHHHHHHHHHHhcCCC---CCHHHHHHHHHhhccCCCCHHHHHHHHHHHHHHhCCccCccHHHHHH
Confidence 579999999999999999999999999965 899999999999999999999999999999999996 9999999999
Q ss_pred HHHHHHHHHHhhhhhhHHHHHHHHHhhhhcCccccCcchHHHH-HHHhcHHHHHhhhcccccCCCChhhHHHHHHhhccc
Q 003575 80 RVAVSNLHKITKNSFSETIKDMYNYYNKRSGKKASLVADDVYE-IIMKNAACLDGAIIYDRDFDFDYFGFKTLERSYLLK 158 (810)
Q Consensus 80 rl~~~~l~k~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~-~~~~~~~~l~~~i~~~rd~~~~y~g~~~l~~~Yllk 158 (810)
||++++|||+++++|.. ..+.+++. .++..+++++++++ |+.+++++|+++|+|+||+.|+|+|+++|+++||+|
T Consensus 81 Rl~~~~l~k~~~~~~~~--~~~~~~~~--~~~~~~~~~~~~~~~y~~~~~~~l~~~i~~~rd~~f~y~g~~~l~~rYllk 156 (753)
T PHA02572 81 RLLMFALRKQVYGQFEP--PSFIDHIS--KCVNEGKYDPEILSKYSAEEITYLESFIDHDRDFEFTYAGAMQLKEKYLVQ 156 (753)
T ss_pred HHHHHHHHHHHhcccch--hhHHHHHH--HHHhcCchhHHHHHHcCHHHHHHHHHhhchhhccCCCHHHHHHHHHhhCCc
Confidence 99999999999988742 23333332 24556789999997 779999999999999999999999999999999999
Q ss_pred c--CCcccCCHHHHHHHHHhhhccC-----ChHHHHHHHHHHhcCceecCCccccccCCCCCCCcccccccccCCChHHH
Q 003575 159 M--DSRVVERPQHMLMRVSVGIHKD-----DTDSALKTYHLMSQHWFTHATPTLFNAGTPQPQLSSCFLLCMKDDSIEGI 231 (810)
Q Consensus 159 ~--~g~~~E~pq~~~~RVA~~l~~~-----~~~~~~~~y~~ls~~~~~~atP~l~naGt~~~~lsSCfl~~~~~DS~~~I 231 (810)
. +|+++|+||++|||||++||.. +++++++||++||+++|+||||||+|+||+++|||||||+++ +||++||
T Consensus 157 ~~~~~~~~E~pq~~~~rVA~~la~~e~~~~r~~~a~~fy~~ls~~~~~paTPtl~naGt~~~qlsSCFl~~v-~Dsl~~I 235 (753)
T PHA02572 157 DRSTGEIYETPQFAYMLIAMALHQDEPKEDRLEHVIRFYNAVSTRKISLPTPIMAGVRTPTRQFSSCVVIES-GDSLDSI 235 (753)
T ss_pred CCCCCceecCHHHHHHHHHHHHHhhccccchHHHHHHHHHHHHcCCcCCCChhhhcCCCCCCcccceeeCCC-CCCHHHH
Confidence 4 4788999999999999999974 367899999999999999999999999999999999999997 8999999
Q ss_pred HHHHHHHHHHHHhcCCcceeeeeecCCCCcccCCCCCCCCcccHHHHHHHHHHHHhhCCCcccCceEEeecCCcccHHHH
Q 003575 232 YDTLKKCAIISKSAGGIGLSIHNIRASGSYIHGTNGSSNGIVPMLQVFNDTARYVDQGGGKRKGAFAIYLEPWHADIFEF 311 (810)
Q Consensus 232 ~~~~~~~a~isk~ggGiG~~~s~iR~~Gs~I~g~~g~ssG~vp~lk~~~~~~~~v~qgG~~Rrga~~~yl~~wH~DI~~F 311 (810)
+++++++|.+.+.|||||+|+|+|||+|++|+|++|.|+|||||||+||+++++|+||| +||||+|+||++|||||++|
T Consensus 236 ~~~~~~~a~~~sk~gGiG~~~s~iR~~Gs~I~g~~g~ssG~vp~lk~~d~~~~~v~QgG-~R~GA~~vyL~~wHpDI~~F 314 (753)
T PHA02572 236 NKTAMAIVKYISKRAGIGINAGMIRAEGSKIRGGEVRHTGVIPFWKHFQTAVKSCSQGG-IRGGAATAYYPIWHLEVEDL 314 (753)
T ss_pred HHHHHHHHHHHHhCCeEEeeccccCCCCCccCCCCCCCCChhhHHHHHHHHHHHHhcCC-cccCceEEEEeCCCcCHHHH
Confidence 99999999777777899999999999999999999999999999999999999999999 89999999999999999999
Q ss_pred HHhhhhcCcccccccccceecccCHHHHHHHhcCCceEEecCCCCCC-chhhh---hhhHHHHHHHHHHcC-ceeEEEeH
Q 003575 312 LDLRKNQGKEECRARDLFYALWVPDLFMERVRDDGKWSLFCPSDASG-LADSW---GIEFEHLYSQYEEEG-RAKMVISA 386 (810)
Q Consensus 312 l~~K~~~g~e~~r~~~l~~sv~ipD~Fm~rv~~~~~w~Lf~P~~~~~-L~~~~---g~eF~~~Y~~~e~~~-~~~~~v~A 386 (810)
|++|+++|+++.|++++|+||||||+|||||++|++|+||+|+++++ |.+.| |++|+++|.+||+++ +.+++|+|
T Consensus 315 L~~K~~~g~e~~r~~~l~~~v~ipD~Fm~~v~~~~~w~Lf~P~~~~~~l~~~~~~~~~ef~~~Y~~~e~~~~~~~~~v~A 394 (753)
T PHA02572 315 LVLKNNKGVEENRIRHLDYGVQINDLMYERFIKNDYITLFSPHDVGGELYDAYFADQDRFRELYEALEKDPSVRKKRIKA 394 (753)
T ss_pred HHHhcccCcchhhhhhhhhHhhcCHHHHHHHHcCCCEEEeCCccCccchhhhhccchhHHHHHHHHHHhcccceeEEEeH
Confidence 99999999999999999999999999999999999999999999998 99998 599999999999975 56899999
Q ss_pred HHHHHHHHHHHHhhCCceeEechhhhhhCCCCCCCeEEeecCCccccccCCC-------CCceeeeccccCchhhhhccC
Q 003575 387 RKLWFEILNSQIETGTPYMLFKDSCNRKSNQQNLGTIKSSNLCTEIVEFSSP-------EETAVCNLASIALPRYVREKG 459 (810)
Q Consensus 387 r~l~~~I~~~~~etG~P~i~f~D~~Nr~~~~~~~g~I~~sNlC~EI~~~~~~-------~e~~~CNL~SInL~~~v~~~~ 459 (810)
|+||++|++++|+||+|||+|+|++|+++|+ .|+|++||||+||+|++.+ +|+++|||+||||++|
T Consensus 395 reLw~~I~~~~~etG~Pyi~f~D~~N~~~~~--~g~I~~SNlC~Ei~l~~~~~~~~d~~~e~~~CNL~SINL~~~----- 467 (753)
T PHA02572 395 QELFLLLLKERSETGRIYIMFIDHCNNHSPF--KDPIRQSNLCCEIALPTKPLNHIDGEGEIALCTLSAIVLGNF----- 467 (753)
T ss_pred HHHHHHHHHHHhccCCcceEeehhhhhcCcc--cCceeecCCCccccCCCCccccccCCCceEEEECHHHHHHHh-----
Confidence 9999999999999999999999999999998 8999999999999999987 8899999999999998
Q ss_pred CccccccccccccCCCCCccCCHHHHHHHHHHHHHHHHHHHhcCCCChHHHHHHhhccCCceeecchHHHHHHHcCCCCC
Q 003575 460 VPVQSNVSKLVGSRDSKNRLFDFERLAEVTKIITENLNKIIDVNHYPIETTRRSNLRHRPIGIGIQGLADTFILLGLPFE 539 (810)
Q Consensus 460 ~~~~~~~~~~~g~~~~~~~~fD~~~l~~~v~~avr~LD~vId~~~~p~~~~~~~~~~~R~iGlGv~Glad~L~~~gi~y~ 539 (810)
|||+.|+++|+++||+||+|||++.||++++ ++++++|+||||+|||||+|+++|++|+
T Consensus 468 --------------------~D~~~l~~~v~~avr~LDnVID~~~yP~~~~-~~~~~~R~IGLGv~Glad~L~~lgi~Y~ 526 (753)
T PHA02572 468 --------------------EDQDEIEELAEVAVRALDNLLDYQDYPVPAA-LKAKKRRSLGVGVTNYAHYLAKNFASYE 526 (753)
T ss_pred --------------------cCHHHHHHHHHHHHHHHHHHHhccCCChHHH-HhhhhcCccccchhHHHHHHHHCCCCcC
Confidence 4789999999999999999999999999999 9999999999999999999999999999
Q ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCCCCCCccccCccccccccCCCC------CcccHHHHHHHHHhcCcc
Q 003575 540 SPEAQQLNKDIFETIYYHALKASAELAVKDGPYETYFGSPMSKGILQVDMWNITPS------DRWDWSSLREMISKNGVR 613 (810)
Q Consensus 540 S~ea~~l~~~i~e~i~~~a~~aS~eLAke~G~~~~f~~S~~~~G~l~~d~~~~~~~------~~~dW~~Lr~~i~~~G~R 613 (810)
|+|| +|+++|||+|+|+|++||++||+|+|+||.|++|+|++|+|++|.|+..+. ..+||++||++|++||+|
T Consensus 527 S~eA-~l~~~i~e~i~~~A~~aS~eLAkE~G~~p~f~~S~~~~G~~~~~~~~~~~~~~~~~~~~~dW~~L~~~i~~~GlR 605 (753)
T PHA02572 527 DANA-DLVHELFERLQYYLIKASNKLAKEKGACEYFSDTKYSRGELPIDWYKKKVDELVAPKYNCDWESLREDLKKYGIR 605 (753)
T ss_pred CHHH-HHHHHHHHHHHHHHHHHHHHHHHHhCCCCCcCcChhhcccchhhcccchhhhhcccchhhhHHHHHHHHHHhCcc
Confidence 9999 999999999999999999999999999999999999999999999886432 247999999999999999
Q ss_pred ccceeccCCCcchhhhcCCCccccccccceeeEEcccCceEEeCHHHHHHHHHcCCChHHHHHHHHhcCCccccccCCch
Q 003575 614 NSLLVAPMPTASTSQILGNNECFEPYTSNIYTRRVLSGEFIVVNKHLLKDLTELGLWSHALKTKIIYENGSVSKISEIPE 693 (810)
Q Consensus 614 Ns~l~AiaPT~stS~i~g~s~gieP~~s~~y~r~~~~g~~~~vn~~l~~~l~~~g~~~~~~~~~i~~~~Gsv~~~~~lp~ 693 (810)
||+++|||||||||+|+|+|+||||+|+++|.|++.+|+|+++||++ +
T Consensus 606 Ns~l~AiaPT~S~S~i~g~s~giEP~~s~~~~r~~~~G~~~~~~p~l--------------------------------~ 653 (753)
T PHA02572 606 NSTLSALMPCESSSQVSNSTNGIEPPRGPVSIKKSKEGPFNQVVPNV--------------------------------E 653 (753)
T ss_pred ccceeeeCCcHHHHHHhCCCCccCcccccEEEEEecCceEEEeCCCH--------------------------------H
Confidence 99999999999999999999999999999999999999999998876 2
Q ss_pred HHHhhccccccC---ChHHHHHHHHHhCcccccccceeEeeCCC-------ChHHHHHHHHHHHHcCCceEEEEecCccc
Q 003575 694 ELKAIYKTVWEI---KQKTLVDMAADRGCYIDQSQSLNIHMEQP-------DHGKLTSLHFYAWSKGMKTGMYYLRTRAA 763 (810)
Q Consensus 694 ~~k~~y~tA~ei---~~~~~i~~~a~~Q~~vDqs~S~nl~~~~~-------~~~~l~~~~~~Awk~GlKt~~yY~r~~~~ 763 (810)
+++++|+||||| +|+++|+|+|+||||||||||+|||++++ +.++|.++|++|||+|||| +||+|++++
T Consensus 654 ~~~~~ykta~~i~~~~~~~~i~~~A~rq~~IDQsqS~nl~~~~~~~~~~~~~~~~l~~~~~~Aw~~GlKT-~YY~rt~~~ 732 (753)
T PHA02572 654 TLKDLYDLLWDLAKKGNKGYLTQVAIMQKFVDQAISANTSYDPENYPNGKVPMSVMLDDLLYFYYYGGKT-LYYHNTRDG 732 (753)
T ss_pred HHHHHHHhHHHhcccChHHHHHHHHHHhccCchhhcceeeecCCcCcccccCHHHHHHHHHHHHHhCCce-EeecCcccc
Confidence 345689999999 99999999999999999999999998653 4689999999999999999 899999999
Q ss_pred ccccccccc
Q 003575 764 ADAIKFTVD 772 (810)
Q Consensus 764 ~~~~~~~~~ 772 (810)
++++...|.
T Consensus 733 ~~~~~~~~~ 741 (753)
T PHA02572 733 KGTEDYEIE 741 (753)
T ss_pred ccccccccc
Confidence 999777653
No 8
>PRK07088 ribonucleotide-diphosphate reductase subunit alpha; Validated
Probab=100.00 E-value=9.9e-182 Score=1594.97 Aligned_cols=694 Identities=34% Similarity=0.525 Sum_probs=647.4
Q ss_pred CeEEccCCceeccChhHHHHHHHHHHhcCCCCCCCHHHHHHHHHhhcCCCCCHHHHHHHHHHHHHhh-------------
Q 003575 1 MYVIKRDGRKEPVRFDKITARLKKLSYGLSKEHCDPVLVAQKVCAGVYKGVTTTQLDELAAETAAAM------------- 67 (810)
Q Consensus 1 ~~v~krdG~~e~~~~~ki~~~i~~~~~~l~~~~v~~~~i~~~~~~~~~~~itt~ei~~~~~~~a~~~------------- 67 (810)
|+|+||||++|+|+++||.++|+++|+||+. ||+.++..++..++++||||+||++++|++|++|
T Consensus 3 ~~v~k~~g~~~~~~~~k~~~~~~~~~~~l~~--~~~~~~~~~~~~~~~~~~t~~e~~~~~~~~a~~~~~~~~~~~~~~~~ 80 (764)
T PRK07088 3 IKIKKRDGQYEPLQVEKTKKMVKLACEGLYG--CDPLELELDSRIQFRDGMTTKEIQKSLIQTAIEKVIQNSKDNNGNNT 80 (764)
T ss_pred eEEEeeCCccccCCHHHHHHHHHHHhcCCcc--CCHHHHHHHHHhccCCCCCHHHHHHHHHHHHHHhccccccccccccC
Confidence 5799999999999999999999999999964 9999999999999999999999999999999999
Q ss_pred ccCCCChHHHHHHHHHHHHHHHhhhhh--hHH-HHHHHHHhhhhcCccccCcchHHHH-HHHhcHHHHHhhhcccccCCC
Q 003575 68 TVNHPDYALLAGRVAVSNLHKITKNSF--SET-IKDMYNYYNKRSGKKASLVADDVYE-IIMKNAACLDGAIIYDRDFDF 143 (810)
Q Consensus 68 ~~~~p~y~~lA~rl~~~~l~k~~~~~~--~~~-~~~~~~~~~~~~~~~~~l~~~~~~~-~~~~~~~~l~~~i~~~rd~~~ 143 (810)
+..||||+.+||||++++|||++.+.| .+. +.+++.++. .++..+++++++++ |+.+++++|+++|+++||+.|
T Consensus 81 ~~~~p~~~~~Aarl~~~~l~k~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~y~~~~~~~l~~~i~~~rd~~~ 158 (764)
T PRK07088 81 KKTNPNWQYVAARLYVFDLYKEARINRHYNSFGYGDYYELVK--KLVEEKLYGEYLLQNYSKEEIKELEKYIKPERDFLF 158 (764)
T ss_pred CccCccHHHHHHHHHHHHHHHHHHhcccccccchhhHHHHHH--HHHhcchhhHHHHHhcCHHHHHHHHHHhhhccccCC
Confidence 569999999999999999999997643 111 344554442 35566889999987 779999999999999999999
Q ss_pred ChhhHHHHHHhhccc-cCCcccCCHHHHHHHHHhhhcc-----CChHHHHHHHHHHhcCceecCCccccccCCCCCCCcc
Q 003575 144 DYFGFKTLERSYLLK-MDSRVVERPQHMLMRVSVGIHK-----DDTDSALKTYHLMSQHWFTHATPTLFNAGTPQPQLSS 217 (810)
Q Consensus 144 ~y~g~~~l~~~Yllk-~~g~~~E~pq~~~~RVA~~l~~-----~~~~~~~~~y~~ls~~~~~~atP~l~naGt~~~~lsS 217 (810)
+|+|+++|+++||+| .+|.++|+||++|||||++||. ++.+++++||++||+++|+||||||+|+||+++||||
T Consensus 159 ~y~g~~~l~~rYllk~~~~~~~E~pq~~~~rVA~~la~~e~~~~~~~~a~~fy~~ls~~~~~paTPtl~NaGt~~~qlsS 238 (764)
T PRK07088 159 NYEGLKLLADRYLVKGFNREILELPQERFMGIAMHLAIPEGKEKRVYYAKKFYDLLSELKATVATPTLSNAGTPFYQLSS 238 (764)
T ss_pred CHHHHHHHHHhhCccCCCCCEeeCHHHHHHHHHHHHhhhcccccHHHHHHHHHHHHHcCCeecCCcchhcCCCCCCCccc
Confidence 999999999999999 4788999999999999999996 3468899999999999999999999999999999999
Q ss_pred cccccccCCChHHHHHHHHHHHHHHHhcCCcceeeeeecCCCCcccCCCCCCCCcccHHHHHHHHHHHHhhCCCcccCce
Q 003575 218 CFLLCMKDDSIEGIYDTLKKCAIISKSAGGIGLSIHNIRASGSYIHGTNGSSNGIVPMLQVFNDTARYVDQGGGKRKGAF 297 (810)
Q Consensus 218 Cfl~~~~~DS~~~I~~~~~~~a~isk~ggGiG~~~s~iR~~Gs~I~g~~g~ssG~vp~lk~~~~~~~~v~qgG~~Rrga~ 297 (810)
|||+++ +||++||+++++++|+++|+|||||+|||+|||+|++|+|++|.|+|||||||+||+++.+|+||| +||||+
T Consensus 239 CFl~~v-~Dsl~~I~~~~~~~a~isk~gGGiG~~~s~iR~~Gs~I~g~~g~ssGvvp~lk~~n~~~~~v~QgG-~R~GA~ 316 (764)
T PRK07088 239 CFISVV-DDNLWSIYDVNQKFAQVSKHGGALGIYTGKIRALNSEIRGFKNASGGVIPWIKLYNDTAIAVDQLG-KRKGGA 316 (764)
T ss_pred eeecCc-cccHHHHHHHHHHHHHHHhhCCeEEecccccCCCCCcccCCCCCCCChhhHHHHHHHHHHHHHhCC-ccccce
Confidence 999986 899999999999999999999999999999999999999999999999999999999999999999 899999
Q ss_pred EEeecCCcccHHHHHHhhhhcCcccccccccceecccCHHHHHHHhcCCceEEecCCCCC-----Cchhhhhh----hHH
Q 003575 298 AIYLEPWHADIFEFLDLRKNQGKEECRARDLFYALWVPDLFMERVRDDGKWSLFCPSDAS-----GLADSWGI----EFE 368 (810)
Q Consensus 298 ~~yl~~wH~DI~~Fl~~K~~~g~e~~r~~~l~~sv~ipD~Fm~rv~~~~~w~Lf~P~~~~-----~L~~~~g~----eF~ 368 (810)
|+||++|||||++||++|+++|++++|++++|+||||||+|||||++|++|+||+|+++| +|.+.||+ +|+
T Consensus 317 avyL~~wHpDI~~FL~lK~~~g~e~~r~~~l~~~v~ipD~FM~~v~~d~~w~Lf~P~~~~~~~g~~L~d~yg~~~~~ef~ 396 (764)
T PRK07088 317 AITLDIWHKDIPEFLDLKTNNGDDRRKAHDIFPGVSYPDLFMKRLEKRENWSLFDPHEIKKVKGYSLEDYYDEEDRKEFT 396 (764)
T ss_pred eEEEeCCCccHHHHHHhccccchhHHHHhhChhhhccCHHHHHHHHcCCCeEEECccccccccCccHHHHhccchhhhHH
Confidence 999999999999999999999999999999999999999999999999999999999998 69999999 999
Q ss_pred HHHHHHHHc-CceeEEEeHHHHHHHHHHHHHhhCCceeEechhhhhhCCCCCCCeEEeecCCccccccCCCC--------
Q 003575 369 HLYSQYEEE-GRAKMVISARKLWFEILNSQIETGTPYMLFKDSCNRKSNQQNLGTIKSSNLCTEIVEFSSPE-------- 439 (810)
Q Consensus 369 ~~Y~~~e~~-~~~~~~v~Ar~l~~~I~~~~~etG~P~i~f~D~~Nr~~~~~~~g~I~~sNlC~EI~~~~~~~-------- 439 (810)
++|.+||++ ++.+++|+||+||++|++++|+||+|||+|+|++||+||++|.|+|++||||+||+||++|+
T Consensus 397 ~~Y~~~~~~~~~~~~~v~AreLw~~I~~~~~eTG~Pyi~f~D~~Nr~np~~~~G~I~~SNlCtEI~q~~~~~~~~~~~~~ 476 (764)
T PRK07088 397 KKYLECEEDTNIPRRTVPVLDIMKKIMKSAVETGTPFIFFRDTVNKANPNKHKGMIYSSNLCHEIAQNMSESELLEEEII 476 (764)
T ss_pred HHHHHHHhcccceeEEEeHHHHHHHHHHHHHHhCCCeEEeHHHHhhcCCCCCCCeeeecCCchHhhccCCcccccccccc
Confidence 999999984 66789999999999999999999999999999999999999999999999999999998764
Q ss_pred ---------------CceeeeccccCchhhhhccCCccccccccccccCCCCCccCCHHHHHHHHHHHHHHHHHHHhcCC
Q 003575 440 ---------------ETAVCNLASIALPRYVREKGVPVQSNVSKLVGSRDSKNRLFDFERLAEVTKIITENLNKIIDVNH 504 (810)
Q Consensus 440 ---------------e~~~CNL~SInL~~~v~~~~~~~~~~~~~~~g~~~~~~~~fD~~~l~~~v~~avr~LD~vId~~~ 504 (810)
++++|||+||||++ ||++.|+++|+++||+||+|||++.
T Consensus 477 ~~~~~~~~~~~~~~g~~~vCNL~SinL~~--------------------------~d~~~l~~~v~~avr~LDnVID~n~ 530 (764)
T PRK07088 477 DENGYYEVVQKIKAGDMVTCNLNSIVLGN--------------------------VDDEELEEVIPTQIRMLDNVISLNY 530 (764)
T ss_pred cccccccccccccCCCceEEEcHHHHHhh--------------------------hcHHHHHHHHHHHHHHHHHHHhcCC
Confidence 34899999999976 4679999999999999999999999
Q ss_pred CChHHHHHHhhccCCceeecchHHHHHHHcCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCCCCCCccccCc
Q 003575 505 YPIETTRRSNLRHRPIGIGIQGLADTFILLGLPFESPEAQQLNKDIFETIYYHALKASAELAVKDGPYETYFGSPMSKGI 584 (810)
Q Consensus 505 ~p~~~~~~~~~~~R~iGlGv~Glad~L~~~gi~y~S~ea~~l~~~i~e~i~~~a~~aS~eLAke~G~~~~f~~S~~~~G~ 584 (810)
||+|+++++|+++|+||||||||||+|+++|++|+|+||++|+++|||+|+|+|++||++||+|+|+||.|++|+|++|.
T Consensus 531 yP~~~a~~~n~~~R~IGLGvmGlad~La~lgi~Y~S~eA~~l~~~i~e~i~~~A~~aS~eLAkE~G~yp~f~~S~~~~g~ 610 (764)
T PRK07088 531 YPVPEAEITSDKYRAIGLGTSGYHHMLANNKIRWESDEHIKFADKIYEEIAYYAIKASMELAKEKGSYPAFKGSEWETGK 610 (764)
T ss_pred CchHHHHHHHHhcCccceeHHHHHHHHHHCCCCcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCCCCcChhhccc
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cccccccCCCCCcccHHHHHHHHHhcCccccceeccCCCcchhhhcCCCccccccccceeeEEcccCceEEeCHHHHHHH
Q 003575 585 LQVDMWNITPSDRWDWSSLREMISKNGVRNSLLVAPMPTASTSQILGNNECFEPYTSNIYTRRVLSGEFIVVNKHLLKDL 664 (810)
Q Consensus 585 l~~d~~~~~~~~~~dW~~Lr~~i~~~G~RNs~l~AiaPT~stS~i~g~s~gieP~~s~~y~r~~~~g~~~~vn~~l~~~l 664 (810)
+ |+.|+.. ..+|++||++|++||+|||+++|||||+|||+|+|+|+||||+|+++|.|+.
T Consensus 611 ~-~~~~~~~---~~~W~~L~~~i~~~GlRNs~l~AiAPT~StS~i~g~s~giEP~~~~~~~r~~---------------- 670 (764)
T PRK07088 611 Y-FERRGYN---SERWKKLKEEIKKYGMRNGYITAVAPTGSTSNIANTTAGIDPVFKRFFMEEK---------------- 670 (764)
T ss_pred h-hhccccc---cccHHHHHHHHHHhCccccccccCCCCcchhhhcCCCCcccchhhhHhhhhc----------------
Confidence 7 6766543 3489999999999999999999999999999999999999999999988642
Q ss_pred HHcCCChHHHHHHHHhcCCccc--cccCCchHHHhhccccccCChHHHHHHHHHhCcccccccceeEeeCC-CChHHHHH
Q 003575 665 TELGLWSHALKTKIIYENGSVS--KISEIPEELKAIYKTVWEIKQKTLVDMAADRGCYIDQSQSLNIHMEQ-PDHGKLTS 741 (810)
Q Consensus 665 ~~~g~~~~~~~~~i~~~~Gsv~--~~~~lp~~~k~~y~tA~ei~~~~~i~~~a~~Q~~vDqs~S~nl~~~~-~~~~~l~~ 741 (810)
+|+++ .+|.+|++.+++|+|||||+|+++|+|+|+||||||||||+|||+++ ++.++|.+
T Consensus 671 -----------------~g~~~~~~~~~l~~~~~~~y~tA~ei~~~~~I~~~A~rQ~~IDqsiS~nl~~~~~~t~~~l~~ 733 (764)
T PRK07088 671 -----------------KGSFTPKTAPDLNEENFWYYKEAHTIDQQWSIKACGVRQRHIDQAQSFNLYITPEYKAKQILN 733 (764)
T ss_pred -----------------CCceeecCCcccCHHHHHHhchHHhCCHHHHHHHHHHHcccccccccCceecCCCCCHHHHHH
Confidence 23332 35778888889999999999999999999999999999999999996 69999999
Q ss_pred HHHHHHHcCCceEEEEecCcccc
Q 003575 742 LHFYAWSKGMKTGMYYLRTRAAA 764 (810)
Q Consensus 742 ~~~~Awk~GlKt~~yY~r~~~~~ 764 (810)
+|++|||+|||| +||+|+++..
T Consensus 734 ~y~~Awk~GlKt-~yY~R~~s~~ 755 (764)
T PRK07088 734 LYIEAWKQGVKT-IYYVRNKSLE 755 (764)
T ss_pred HHHHHHHcCCCE-EEEEecCCcc
Confidence 999999999999 7999996543
No 9
>PRK09103 ribonucleotide-diphosphate reductase subunit alpha; Validated
Probab=100.00 E-value=2.9e-181 Score=1589.87 Aligned_cols=707 Identities=29% Similarity=0.475 Sum_probs=662.8
Q ss_pred CeEEccCCceeccChhHHHHHHHHHHhcCCCCCCCHHHHHHHHHhhcCCCCCHHHHHHHHHHHHHhhcc-CCCChHHHHH
Q 003575 1 MYVIKRDGRKEPVRFDKITARLKKLSYGLSKEHCDPVLVAQKVCAGVYKGVTTTQLDELAAETAAAMTV-NHPDYALLAG 79 (810)
Q Consensus 1 ~~v~krdG~~e~~~~~ki~~~i~~~~~~l~~~~v~~~~i~~~~~~~~~~~itt~ei~~~~~~~a~~~~~-~~p~y~~lA~ 79 (810)
|+|+||||+.|+|+.+||+++|+++|+||+ .||+++|+.++..+++|||||+||++++|++|++|++ .||||++|||
T Consensus 2 ~~v~k~~g~~~~~~~~k~~~~~~~~~~~l~--~~~~~~l~~~~~~~~~~~~t~~e~~~~~~~~a~~~~~~~~pdy~~~Aa 79 (758)
T PRK09103 2 LLVTKRDGRTERINLDKIHRVITWAAEGLH--NVSVSQVELRSHIQFYDGIKTSDIHETIIKAAADLISRDAPDYQYLAA 79 (758)
T ss_pred eEEEEeCCccccCCHHHHHHHHHHHhccCc--cCCHHHHHHHHHhhccCCCCHHHHHHHHHHHHHHhCcccCCcHHHHHH
Confidence 689999999999999999999999999996 4999999999999999999999999999999999998 9999999999
Q ss_pred HHHHHHHHHHhhhhhhHHHHHHHHHhhhhcCccccCcchHHHH-HHHhcHHHHHhhhcccccCCCChhhHHHHHHhhccc
Q 003575 80 RVAVSNLHKITKNSFSETIKDMYNYYNKRSGKKASLVADDVYE-IIMKNAACLDGAIIYDRDFDFDYFGFKTLERSYLLK 158 (810)
Q Consensus 80 rl~~~~l~k~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~-~~~~~~~~l~~~i~~~rd~~~~y~g~~~l~~~Yllk 158 (810)
||++++|||+++++|.. ..+++++. ..+..+++++++++ |+.+++++|++.|+++||+.|+|+|+++|+++||+|
T Consensus 80 rl~~~~l~k~~~~~~~~--~~~~~~~~--~l~~~~~~~~~~~~~~~~~~~~~l~~~i~~~rd~~f~y~~~~~l~~rYllk 155 (758)
T PRK09103 80 RLAIFHLRKKAYGQFEP--PALYDHVV--KMVEMGKYDKHLLEDYTEEEFDQMDTFIDHWRDMNFSYAAVKQLEGKYLVQ 155 (758)
T ss_pred HHHHHHHHHHHHccccc--hhHHHHHH--HHHHcCchhHHHHHHcCHHHHHHHHHHhchhhccCCCHHHHHHHhhceecc
Confidence 99999999999988755 23443332 23345789999998 899999999999999999999999999999999998
Q ss_pred --cCCcccCCHHHHHHHHHhhhccC-----ChHHHHHHHHHHhcCceecCCccccccCCCCCCCcccccccccCCChHHH
Q 003575 159 --MDSRVVERPQHMLMRVSVGIHKD-----DTDSALKTYHLMSQHWFTHATPTLFNAGTPQPQLSSCFLLCMKDDSIEGI 231 (810)
Q Consensus 159 --~~g~~~E~pq~~~~RVA~~l~~~-----~~~~~~~~y~~ls~~~~~~atP~l~naGt~~~~lsSCfl~~~~~DS~~~I 231 (810)
.+|+++|+||+||||||++||.. +++++++||++||+++|+||||+|+|+|++++|||||||+++ +||++||
T Consensus 156 ~~~~~~~~E~pq~~~~rVA~~la~~e~~~~~~~~~~~fy~~ls~~~~~~~Tp~l~naGt~~~qlsSCFl~~v-~Dsl~~I 234 (758)
T PRK09103 156 NRVTGEIYESAQFLYILVAACLFSNYPKETRLDYVKRFYDAVSTFKISLPTPIMSGVRTPTRQFSSCVLIEC-GDSLDSI 234 (758)
T ss_pred ccCCCCcccCHHHHHHHHHHHHhhccCccchHHHHHHHHHHHHhCCcCCCCchhcCCCCCCCCeeEEEecCC-CCCHHHH
Confidence 36888999999999999999963 467899999999999999999999999999999999999997 8999999
Q ss_pred HHHHHHHHHHHHhcCCcceeeeeecCCCCcccCCCCCCCCcccHHHHHHHHHHHHhhCCCcccCceEEeecCCcccHHHH
Q 003575 232 YDTLKKCAIISKSAGGIGLSIHNIRASGSYIHGTNGSSNGIVPMLQVFNDTARYVDQGGGKRKGAFAIYLEPWHADIFEF 311 (810)
Q Consensus 232 ~~~~~~~a~isk~ggGiG~~~s~iR~~Gs~I~g~~g~ssG~vp~lk~~~~~~~~v~qgG~~Rrga~~~yl~~wH~DI~~F 311 (810)
++++++++++++.|||||+|||+|||+|++|+|++|.|+|||||||+||+++.+|+||| +||||+|+||++|||||++|
T Consensus 235 ~~~~~~~a~~~s~gGGiG~~~s~lR~~Gs~I~g~~g~ssG~vp~mk~~d~~~~~v~QgG-~RrGA~~vyL~~wHpDI~~F 313 (758)
T PRK09103 235 NATSSAIVKYVSQRAGIGINAGRIRALGSPIRGGEAFHTGCIPFYKHFQTAVKSCSQGG-VRGGAATLFYPIWHLEVESL 313 (758)
T ss_pred HHHHHHHHHHHhcCCeEEeeccccCCCCCccCCCCCCCCChHHHHHHHHHHHHHHHcCC-CCCcceEEEecCCCccHHHH
Confidence 99999999988889999999999999999999999999999999999999999999999 89999999999999999999
Q ss_pred HHhhhhcCcccccccccceecccCHHHHHHHhcCCceEEecCCCCCCchhhh---hhhHHHHHHHHHHcC-ceeEEEeHH
Q 003575 312 LDLRKNQGKEECRARDLFYALWVPDLFMERVRDDGKWSLFCPSDASGLADSW---GIEFEHLYSQYEEEG-RAKMVISAR 387 (810)
Q Consensus 312 l~~K~~~g~e~~r~~~l~~sv~ipD~Fm~rv~~~~~w~Lf~P~~~~~L~~~~---g~eF~~~Y~~~e~~~-~~~~~v~Ar 387 (810)
|++|+++|+++.|++++|+||||||+||+||++|++|+||+|+++|+|++.| |++|+++|.+||+++ +.+++|+||
T Consensus 314 L~~K~~~g~e~~r~~~l~~sv~ipD~FM~~v~~d~~w~Lf~P~~~~~l~~~~~~~~~ef~~~Y~~~e~~~~~~~~~v~Ar 393 (758)
T PRK09103 314 LVLKNNRGVEENRVRHMDYGVQINKLMYQRLIKGGDITLFSPSDVPGLYDAFFADQDEFERLYTKYEQDDSIRKKRVKAV 393 (758)
T ss_pred HHhcccCCchhhhHhhCchhhccCHHHHHHHHcCCCeEEeCccccccccccccchhHHHHHHHHHHHhcCCeeeEEEeHH
Confidence 9999999999999999999999999999999999999999999999999998 699999999999876 468999999
Q ss_pred HHHHHHHHHHHhhCCceeEechhhhhhCCC-CCCCeEEeecCCccccccCCC--------CCceeeeccccCchhhhhcc
Q 003575 388 KLWFEILNSQIETGTPYMLFKDSCNRKSNQ-QNLGTIKSSNLCTEIVEFSSP--------EETAVCNLASIALPRYVREK 458 (810)
Q Consensus 388 ~l~~~I~~~~~etG~P~i~f~D~~Nr~~~~-~~~g~I~~sNlC~EI~~~~~~--------~e~~~CNL~SInL~~~v~~~ 458 (810)
+||++|+++++|||.|||+|+|++|+++|+ ++.|+|++||||+||+|++.| +|+++|||+||||++|+
T Consensus 394 eLw~~I~~~~~etG~pfi~fkD~~N~~~p~~~~~g~I~~SNlC~Ei~l~~~p~~~~~~~~~e~~vCNLgSINL~~~~--- 470 (758)
T PRK09103 394 ELFSLMMQERASTGRIYIQNVDHCNTHSPFDPKVAPVRQSNLCLEIALPTKPLNDVNDENGEIALCTLSAFNLGAIN--- 470 (758)
T ss_pred HHHHHHHHHhcCcCCceeeechhhhhcCCCCccCCeeeecCcccccccCCcccccccccCCCeeEEEhHHHHHHHhc---
Confidence 999999999999999999999999999996 689999999999999999886 78899999999999873
Q ss_pred CCccccccccccccCCCCCccCCHHHHHHHHHHHHHHHHHHHhcCCCChHHHHHHhhccCCceeecchHHHHHHHcCCCC
Q 003575 459 GVPVQSNVSKLVGSRDSKNRLFDFERLAEVTKIITENLNKIIDVNHYPIETTRRSNLRHRPIGIGIQGLADTFILLGLPF 538 (810)
Q Consensus 459 ~~~~~~~~~~~~g~~~~~~~~fD~~~l~~~v~~avr~LD~vId~~~~p~~~~~~~~~~~R~iGlGv~Glad~L~~~gi~y 538 (810)
||+.|+++|+++||+||||||+|.||+|+++++|+++|+||||+|||||+|+++|++|
T Consensus 471 ----------------------d~~~l~~~v~~avr~LDnVID~~~yP~~~~~~~n~~~R~IGLGvmGlad~L~~lgi~Y 528 (758)
T PRK09103 471 ----------------------SLDELEELADLAVRALDALLDYQDYPIPAAKRGAMGRRTLGIGVINFAYYLAKNGVRY 528 (758)
T ss_pred ----------------------CHHHHHHHHHHHHHHHHHHHHhcCCChHHHHHHHhhcCccccchHHHHHHHHHcCCCC
Confidence 7899999999999999999999999999999999999999999999999999999999
Q ss_pred CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCCCCCCccccCccccccccCCC------CCcccHHHHHHHHHhcCc
Q 003575 539 ESPEAQQLNKDIFETIYYHALKASAELAVKDGPYETYFGSPMSKGILQVDMWNITP------SDRWDWSSLREMISKNGV 612 (810)
Q Consensus 539 ~S~ea~~l~~~i~e~i~~~a~~aS~eLAke~G~~~~f~~S~~~~G~l~~d~~~~~~------~~~~dW~~Lr~~i~~~G~ 612 (810)
+|+||++|+++|||+|+|+|++||++||+|+|+||.|++|+|++|+||++.|...+ ...+||++||++|++||+
T Consensus 529 ~S~eA~~l~~~i~e~i~~~A~~aS~eLAkErG~fp~f~~S~~~~G~~~~~~~~~~~~~~~~~~~~~dW~~Lr~~i~~~Gl 608 (758)
T PRK09103 529 SDGSANNLTHKTFEAIQYYLLKASNELAKEQGACPWFNETTYAQGILPIDTYKKDLDAICNEPLHYDWETLREEIKTHGL 608 (758)
T ss_pred CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCCCCCChhhcCCchhhhhhhhccccccccchhhHHHHHHHHHHhCc
Confidence 99999999999999999999999999999999999999999999999999887542 224799999999999999
Q ss_pred cccceeccCCCcchhhhcCCCccccccccceeeEEcccCceEEeCHHHHHHHHHcCCChHHHHHHHHhcCCccccccCCc
Q 003575 613 RNSLLVAPMPTASTSQILGNNECFEPYTSNIYTRRVLSGEFIVVNKHLLKDLTELGLWSHALKTKIIYENGSVSKISEIP 692 (810)
Q Consensus 613 RNs~l~AiaPT~stS~i~g~s~gieP~~s~~y~r~~~~g~~~~vn~~l~~~l~~~g~~~~~~~~~i~~~~Gsv~~~~~lp 692 (810)
|||+++|||||||||+|+|+|+||||+|+++|.|++.+|.+..++|.+
T Consensus 609 RNs~l~AiaPTgS~S~i~g~s~giEP~~s~~~~k~~~~g~~~~~~p~~-------------------------------- 656 (758)
T PRK09103 609 RNSTLSALMPSETSSQISNATNGIEPPRGYVSIKASKDGILKQVVPDY-------------------------------- 656 (758)
T ss_pred cccceeecCCcHHHHHHhCcCCCcCccccceeeeeccCceeeecCCCH--------------------------------
Confidence 999999999999999999999999999999999998888776655544
Q ss_pred hHHHhhccccccC-ChHHHHHHHHHhCcccccccceeEeeCC-------CChHHHHHHHHHHHHcCCceEEEEecCcccc
Q 003575 693 EELKAIYKTVWEI-KQKTLVDMAADRGCYIDQSQSLNIHMEQ-------PDHGKLTSLHFYAWSKGMKTGMYYLRTRAAA 764 (810)
Q Consensus 693 ~~~k~~y~tA~ei-~~~~~i~~~a~~Q~~vDqs~S~nl~~~~-------~~~~~l~~~~~~Awk~GlKt~~yY~r~~~~~ 764 (810)
++++..|+++|+| +|+++|+|+|+||||||||||+|||+++ ++.++|.++|++|||+|||| +||+|+++++
T Consensus 657 ~~~~~~y~~~~~i~~~~~~I~~~A~rQ~~VDQsqS~nl~~~~~~~~~~~~t~~~l~~~~~~Aw~~GlKT-~YY~rs~~~~ 735 (758)
T PRK09103 657 ERLKDAYELLWEMPNNDGYLQLVGIMQKFVDQSISANTNYDPSRFPSGKVPMKQLLKDLLTAYKFGVKT-LYYHNTRDGA 735 (758)
T ss_pred HHHHHHHHHHHhccChHHHHHHHHHHhhhcchhhcceeeecccccccCCCCHHHHHHHHHHHHHhCCce-EeecCchhhh
Confidence 3455678999999 5899999999999999999999999843 47899999999999999999 8999999999
Q ss_pred ccccccccc
Q 003575 765 DAIKFTVDT 773 (810)
Q Consensus 765 ~~~~~~~~~ 773 (810)
+++|||+..
T Consensus 736 ~~~~~~~~~ 744 (758)
T PRK09103 736 EDAQDDLQP 744 (758)
T ss_pred hhhhhhccc
Confidence 999999744
No 10
>PRK09209 ribonucleotide-diphosphate reductase subunit alpha; Validated
Probab=100.00 E-value=9e-181 Score=1588.77 Aligned_cols=695 Identities=32% Similarity=0.512 Sum_probs=646.3
Q ss_pred eEEccCCceeccChhHHHHHHHHHHhcCCCCCCCHHHHHHHHHhhcCC--CCCHHHHHHHHHHHHHhhcc-CCCChHHHH
Q 003575 2 YVIKRDGRKEPVRFDKITARLKKLSYGLSKEHCDPVLVAQKVCAGVYK--GVTTTQLDELAAETAAAMTV-NHPDYALLA 78 (810)
Q Consensus 2 ~v~krdG~~e~~~~~ki~~~i~~~~~~l~~~~v~~~~i~~~~~~~~~~--~itt~ei~~~~~~~a~~~~~-~~p~y~~lA 78 (810)
+|+||||++|+|+++||+++|+++|+|++ .+|+..++.++..++++ ||||+||+++++++|+++++ .||||..||
T Consensus 11 ~v~~~~g~~~~~~~~ki~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~t~~e~~~~~~~~a~~~~~~~~p~y~~~A 88 (761)
T PRK09209 11 IVKEAGNRKLPFDKERLDRYIDQIHAEFP--QLDVEDYKRRVFNFVERKESVTADDLVDYLIREAEARVDLEEPEWTFFA 88 (761)
T ss_pred EEEccCCccccCCHHHHHHHHHHHhCCCC--ccCHHHHHHHHHhccCCCCCCCHHHHHHHHHHHHHHhccccCccHHHHH
Confidence 68999999999999999999999999986 48999999999999975 99999999999999987764 999999999
Q ss_pred HHHHHHHHHHHhhhhh-hH---HHHHHHHHhhhhcCccccCcchHHHH-HHHhcHHHHHhhhcccccCCCChhhHHHHHH
Q 003575 79 GRVAVSNLHKITKNSF-SE---TIKDMYNYYNKRSGKKASLVADDVYE-IIMKNAACLDGAIIYDRDFDFDYFGFKTLER 153 (810)
Q Consensus 79 ~rl~~~~l~k~~~~~~-~~---~~~~~~~~~~~~~~~~~~l~~~~~~~-~~~~~~~~l~~~i~~~rd~~~~y~g~~~l~~ 153 (810)
|||++++|||++.+.+ +. ....+++++ +.++..+++++++++ |+.+++++|+++|+++||+.|+|+|+++|++
T Consensus 89 arl~~~~l~k~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~y~~~~~~~l~~~i~~~rd~~~~y~g~~~l~~ 166 (761)
T PRK09209 89 ARLYLNRLYKRASRNRFYDASEKYGSFVGLQ--ESLAERGIYSNDLLKRYSKEELIEAGKMIDPERDKLFTYIGLYLLAD 166 (761)
T ss_pred HHHHHHHHHHHHHhcccccchhhhhhHHHHH--HHHHhcCcccHHHHHhcCHHHHHHHHHHhhhhcccCCCHHHHHHHHH
Confidence 9999999999996542 10 111222222 234556789999997 7799999999999999999999999999999
Q ss_pred hhcccc-CCcccCCHHHHHHHHHhhhccCC-----hHHHHHHHHHHhcCceecCCccccccCCCCCCCcccccccccCCC
Q 003575 154 SYLLKM-DSRVVERPQHMLMRVSVGIHKDD-----TDSALKTYHLMSQHWFTHATPTLFNAGTPQPQLSSCFLLCMKDDS 227 (810)
Q Consensus 154 ~Yllk~-~g~~~E~pq~~~~RVA~~l~~~~-----~~~~~~~y~~ls~~~~~~atP~l~naGt~~~~lsSCfl~~~~~DS 227 (810)
+||+|. +|+++|+||++|||||+++|..+ ++++++||++||+++|+||||||+|||++++|||||||+++ +||
T Consensus 167 rYllk~~~~~~~E~pq~~~mrVA~~la~~e~~~~r~~~~~~fY~~Ls~~~~~~aTPtl~NaGt~~~qlsSCFl~~v-~Ds 245 (761)
T PRK09209 167 RYLATDSDRNVYELPQERWLTIALYLMQNEPRERRMQLVKEAYWALSNLYMTVATPTLANAGKVGGQLSSCFIDTV-DDS 245 (761)
T ss_pred hhCCcCCCCCEEECHHHHHHHHHHHHHhhcccccHHHHHHHHHHHHHcCcccCCCHHHhcCCCCCCCeeeeEeCCc-ccc
Confidence 999994 58889999999999999999643 67899999999999999999999999999999999999997 899
Q ss_pred hHHHHHHHHHHHHHHHhcCCcceeeeeecCCCCcccCCCCCCCCcccHHHHHHHHHHHHhhCCCcccCceEEeecCCccc
Q 003575 228 IEGIYDTLKKCAIISKSAGGIGLSIHNIRASGSYIHGTNGSSNGIVPMLQVFNDTARYVDQGGGKRKGAFAIYLEPWHAD 307 (810)
Q Consensus 228 ~~~I~~~~~~~a~isk~ggGiG~~~s~iR~~Gs~I~g~~g~ssG~vp~lk~~~~~~~~v~qgG~~Rrga~~~yl~~wH~D 307 (810)
++||+++++++|+++|.|||||+|||+|||+|++|+|++|+|+|||||||+||+++++|+||| +||||+|+||++||||
T Consensus 246 l~~I~~~~~~~a~isk~gGGiG~~~s~iR~~Gs~I~g~~g~ssG~vp~lk~~n~~~~~v~QgG-~RrGA~avyL~~wHpD 324 (761)
T PRK09209 246 LQGIYDSNTDVARVSKHGGGVGAYLGKVRSRGSDIRGFKGVSSGVIPWIKQLNNTAVSVDQLG-QRKGAIAVYLDVWHKD 324 (761)
T ss_pred HHHHHHHHHHHHHHHHcCCeEEecccccCCCCCcccCCCCCCcCHHHHHHHHHHHHHHHHcCC-ccCCceeEEEeCCccc
Confidence 999999999999999999999999999999999999999999999999999999999999999 8999999999999999
Q ss_pred HHHHHHhhhhcCcccccccccceecccCHHHHHHHhcCCceEEecCCCCC-----Cchhhhhh-----hHHHHHHHHHHc
Q 003575 308 IFEFLDLRKNQGKEECRARDLFYALWVPDLFMERVRDDGKWSLFCPSDAS-----GLADSWGI-----EFEHLYSQYEEE 377 (810)
Q Consensus 308 I~~Fl~~K~~~g~e~~r~~~l~~sv~ipD~Fm~rv~~~~~w~Lf~P~~~~-----~L~~~~g~-----eF~~~Y~~~e~~ 377 (810)
|++||++|+++|++++|++++|+||||||+||+||++|++|+||+|+++| +|.++||+ +|+++|++|+++
T Consensus 325 I~~FL~~K~~~gde~~R~~~l~~~v~ipD~FM~~V~~d~~w~Lf~P~~~~~~~g~~L~d~yg~~~~~g~f~~~Y~~~~~~ 404 (761)
T PRK09209 325 IESFLDLRLNNGDERLRAHDVFTGVCIPDLFMEAVERRGDWYLFDPHEVKKVMGWYLEDFYDEKKGDGSFREKYEECVAD 404 (761)
T ss_pred HHHHHHhhcccccHHHhhhcchhhhccCHHHHHHHHCCCCEEEECccccccccCccHHHhhccccccchHHHHHHHHHhC
Confidence 99999999999999999999999999999999999999999999999998 69999997 899999999985
Q ss_pred -CceeEEEeHHHHHHHHHHHHHhhCCceeEechhhhhhCCCCCCCeEEeecCCccccccCCCC-----------------
Q 003575 378 -GRAKMVISARKLWFEILNSQIETGTPYMLFKDSCNRKSNQQNLGTIKSSNLCTEIVEFSSPE----------------- 439 (810)
Q Consensus 378 -~~~~~~v~Ar~l~~~I~~~~~etG~P~i~f~D~~Nr~~~~~~~g~I~~sNlC~EI~~~~~~~----------------- 439 (810)
++.+++|+||+||++|++++|+||+|||+|+|+||++||++|.|+|++||||+||+||++|+
T Consensus 405 ~~~~~~~v~Ar~Lw~~I~~s~~eTG~Pyi~f~D~~N~~np~~~~G~I~~SNlC~EI~q~~~p~~~~~~~~~~~~~~~~~~ 484 (761)
T PRK09209 405 ERLSRKTVKAIDIMKRIMVSQLETGNPFMFYRDEVNRMNPNKHEGMIYSSNLCTEIMQNMSPTVMIQEIISGGQIVITKQ 484 (761)
T ss_pred cCceeeeecHHHHHHHHHHHHHHhCCCeEEeHHHHhhcCCcccCCeeEeecCCcccccCCCccccccccccccccccccc
Confidence 66789999999999999999999999999999999999999999999999999999998774
Q ss_pred --CceeeeccccCchhhhhccCCccccccccccccCCCCCccCCHHHHHHHHHHHHHHHHHHHhcCCCChHHHHHHhhcc
Q 003575 440 --ETAVCNLASIALPRYVREKGVPVQSNVSKLVGSRDSKNRLFDFERLAEVTKIITENLNKIIDVNHYPIETTRRSNLRH 517 (810)
Q Consensus 440 --e~~~CNL~SInL~~~v~~~~~~~~~~~~~~~g~~~~~~~~fD~~~l~~~v~~avr~LD~vId~~~~p~~~~~~~~~~~ 517 (810)
++++|||+||||++|+.+ +.|+++|+++||+||+|||+|.||+|+++++|+++
T Consensus 485 ~g~~~vCNL~SiNL~~~v~~-------------------------~~l~~~v~~avR~LDnVID~n~yP~~~~~~~n~~~ 539 (761)
T PRK09209 485 PGDFVVCNLSSINLGRAVTA-------------------------DVLERLIPIQVRMLDNVIDLNQLPVPQATITNQKY 539 (761)
T ss_pred cCCceEEEChHHHHHHHhch-------------------------HHHHHHHHHHHHHHHHHHhcccCchHHHHHHHHhc
Confidence 368999999999999853 68999999999999999999999999999999999
Q ss_pred CCceeecchHHHHHHHcCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCCCCCCccccCccccccccCCCCCc
Q 003575 518 RPIGIGIQGLADTFILLGLPFESPEAQQLNKDIFETIYYHALKASAELAVKDGPYETYFGSPMSKGILQVDMWNITPSDR 597 (810)
Q Consensus 518 R~iGlGv~Glad~L~~~gi~y~S~ea~~l~~~i~e~i~~~a~~aS~eLAke~G~~~~f~~S~~~~G~l~~d~~~~~~~~~ 597 (810)
|+||||+|||||+|+++|++|+|+||++|+++|||+|+|+|++||++||+|+|+||.|++|+|++|++ |+.|+.. .
T Consensus 540 R~IGLGv~Glad~L~~lgi~Y~S~eA~~~~~~i~e~i~~~A~~aS~eLAkE~G~~~~f~~S~~~~g~~-~~~~~~~---~ 615 (761)
T PRK09209 540 RAIGLGTFGWHHLLALKGIAWESEEAVQYADELYERINYLTIQASMELAKEKGAYPVFKGSDWQTGEY-FERRGYN---S 615 (761)
T ss_pred cccccchhhHHHHHHHCCCCcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCCCCcChhhccch-hhhcCCc---h
Confidence 99999999999999999999999999999999999999999999999999999999999999999997 6766543 2
Q ss_pred ccHHHHHHHHHhcCccccceeccCCCcchhhhcCCCccccccccceeeEEcccCceEEeCHHHHHHHHHcCCChHHHHHH
Q 003575 598 WDWSSLREMISKNGVRNSLLVAPMPTASTSQILGNNECFEPYTSNIYTRRVLSGEFIVVNKHLLKDLTELGLWSHALKTK 677 (810)
Q Consensus 598 ~dW~~Lr~~i~~~G~RNs~l~AiaPT~stS~i~g~s~gieP~~s~~y~r~~~~g~~~~vn~~l~~~l~~~g~~~~~~~~~ 677 (810)
.+|++||++|++||+|||+++|||||+|||+|+|+|+||||+|+++|.|+..+|++.+
T Consensus 616 ~~W~~L~~~i~~~GlRNs~l~AiAPT~StS~i~g~t~giEP~~s~~y~r~~~~~~~~~---------------------- 673 (761)
T PRK09209 616 PQWDELAAQVAENGVRNAYLMAVAPNMSTAQIAGSTASIDPIYSAFYYEEKKDYRRPV---------------------- 673 (761)
T ss_pred hhHHHHHHHHHHhCcchhceeeeCCcHHHHHHcCCCCccCcchhhHhhhhhccceeec----------------------
Confidence 4899999999999999999999999999999999999999999999999876665543
Q ss_pred HHhcCCccccccCCchHHHhhc-cccccCChHHHHHHHHHhCcccccccceeEeeCCC-ChHHHHHHHHHHHHcCCceEE
Q 003575 678 IIYENGSVSKISEIPEELKAIY-KTVWEIKQKTLVDMAADRGCYIDQSQSLNIHMEQP-DHGKLTSLHFYAWSKGMKTGM 755 (810)
Q Consensus 678 i~~~~Gsv~~~~~lp~~~k~~y-~tA~ei~~~~~i~~~a~~Q~~vDqs~S~nl~~~~~-~~~~l~~~~~~Awk~GlKt~~ 755 (810)
.+|.+|++++++| +|||||+|+++|+|+|+||||||||||+|||++++ +.++|.++|++|||+|||| +
T Consensus 674 ---------~~p~l~~~~~~~y~~tA~ei~~~~~I~~~A~rQ~~IDQsiS~nl~~~~~~~~~~l~~~y~~Awk~GlKt-~ 743 (761)
T PRK09209 674 ---------TAPDLSLDTWPYYEKGAYKVDQFWSIRQNAARQRHVDQSISFNFYVPSTIRASELLDLHMTAWKEGLKT-T 743 (761)
T ss_pred ---------cCCCCChhHHHHHhhhHhhCCHHHHHHHHHHHcccccccccCceeCCCCCCHHHHHHHHHHHHHhCCCe-E
Confidence 2466888999999 99999999999999999999999999999999974 6899999999999999999 8
Q ss_pred EEecCccc
Q 003575 756 YYLRTRAA 763 (810)
Q Consensus 756 yY~r~~~~ 763 (810)
||+|+++.
T Consensus 744 YY~Rt~~~ 751 (761)
T PRK09209 744 YYVRSTDI 751 (761)
T ss_pred EEeeccCc
Confidence 99999654
No 11
>PRK12364 ribonucleotide-diphosphate reductase subunit alpha; Provisional
Probab=100.00 E-value=5e-176 Score=1569.18 Aligned_cols=665 Identities=34% Similarity=0.537 Sum_probs=615.0
Q ss_pred CCHHHHHHHHHhhcCCCCCHHHHHHHHHHHHHhhccC-CCChHHHHHHHHHHHHHHHhhhhhhHH-HHHHHHHhhhhcCc
Q 003575 34 CDPVLVAQKVCAGVYKGVTTTQLDELAAETAAAMTVN-HPDYALLAGRVAVSNLHKITKNSFSET-IKDMYNYYNKRSGK 111 (810)
Q Consensus 34 v~~~~i~~~~~~~~~~~itt~ei~~~~~~~a~~~~~~-~p~y~~lA~rl~~~~l~k~~~~~~~~~-~~~~~~~~~~~~~~ 111 (810)
+|+.+|..++..++++||||+||++++|++|++|++. ||||++|||||++++|||++...+.+. +..++.++. .++
T Consensus 126 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~p~~~~~Aarl~~~~l~k~~~~~~~~~~~~~~~~~~~--~~~ 203 (842)
T PRK12364 126 YSLDLLAEKFLSFCKPNMSEGESLAALIKAAVELTTQEAPDWEFIAARLLMLQFSKKLGKSLEKLGIHSFYDKIK--YLT 203 (842)
T ss_pred CCHHHHHHHHHHhccCCCcHHHHHHHHHHHHHHhccccCCcHHHHHHHHHHHHHHHHHhhhccccchHHHHHHHH--HHH
Confidence 4667788888888999999999999999999999996 699999999999999999986432221 122222221 244
Q ss_pred cccCcchHHHH-HHHhcHHHHHhhhcccccCCCChhhHHHHHHhhcccc-CCcccCCHHHHHHHHHhhhcc----CChHH
Q 003575 112 KASLVADDVYE-IIMKNAACLDGAIIYDRDFDFDYFGFKTLERSYLLKM-DSRVVERPQHMLMRVSVGIHK----DDTDS 185 (810)
Q Consensus 112 ~~~l~~~~~~~-~~~~~~~~l~~~i~~~rd~~~~y~g~~~l~~~Yllk~-~g~~~E~pq~~~~RVA~~l~~----~~~~~ 185 (810)
..+++++++++ |+.+++++|+++|+++||+.|+|+|+++|+++||+|. +|+++|+||++|||||+++|. +++++
T Consensus 204 ~~~~~~~~~~~~~~~~~~~~l~~~i~~~rd~~~~y~g~~~l~~rYllk~~~~~~~E~pq~~~~rvA~~la~~e~~~~~~~ 283 (842)
T PRK12364 204 EEGLYGSYILEHYSREEIEEAAGFIDPERDKLFTYSGLDLLLKRYVIRTHSHEPLESPQEMFLGIALHLAMPEKQDRMGW 283 (842)
T ss_pred hcCchhHHHHHHhcHHHHHHHHHHhccccccCCCHHHHHHHHHhhCCcCCCCCeeeCHHHHHHHHHHHHHhhcccccHHH
Confidence 56789999986 7789999999999999999999999999999999994 588899999999999999995 45678
Q ss_pred HHHHHHHHhcCceecCCccccccCCCCCCCcccccccccCCChHHHHHHHHHHHHHHHhcCCcceeeeeecCCCCcccCC
Q 003575 186 ALKTYHLMSQHWFTHATPTLFNAGTPQPQLSSCFLLCMKDDSIEGIYDTLKKCAIISKSAGGIGLSIHNIRASGSYIHGT 265 (810)
Q Consensus 186 ~~~~y~~ls~~~~~~atP~l~naGt~~~~lsSCfl~~~~~DS~~~I~~~~~~~a~isk~ggGiG~~~s~iR~~Gs~I~g~ 265 (810)
+++||++||+++|+||||||+||||+++|||||||+++ +||++||+++++++|+++|.|||||+|||+|||+|++|+|+
T Consensus 284 ~~~fy~~ls~~~~~~aTPtl~Nagt~~~qlsSCFl~~v-~Dsl~~I~~~~~~~a~isk~gGGiG~~~s~iR~~Gs~I~g~ 362 (842)
T PRK12364 284 VKRFYDMLSKLKVTMATPTLSNARKPFHQLSSCFIDTV-PDSLDGIYRSIDNFAQVSKFGGGMGLYFGKVRAVGSNIRGF 362 (842)
T ss_pred HHHHHHHHHcCCcccCCHHHhcCCCCCCCeeeeEeCCC-CccHHHHHHHHHHHHHHHhcCCeeeeeccccCCCCCcccCc
Confidence 99999999999999999999999999999999999986 89999999999999999999999999999999999999999
Q ss_pred CCCCCCcccHHHHHHHHHHHHhhCCCcccCceEEeecCCcccHHHHHHhhhhcCcccccccccceecccCHHHHHHHhcC
Q 003575 266 NGSSNGIVPMLQVFNDTARYVDQGGGKRKGAFAIYLEPWHADIFEFLDLRKNQGKEECRARDLFYALWVPDLFMERVRDD 345 (810)
Q Consensus 266 ~g~ssG~vp~lk~~~~~~~~v~qgG~~Rrga~~~yl~~wH~DI~~Fl~~K~~~g~e~~r~~~l~~sv~ipD~Fm~rv~~~ 345 (810)
+|+|+|||||||+||+++.+|+||| +||||+|+||++|||||++||++|+++|+++.|++++|+||||||+||++|++|
T Consensus 363 ~g~ssG~vp~lk~~~~~~~~v~QgG-~RrGA~~vyL~~wH~DI~~FL~~K~~~g~e~~r~~~l~~~v~ipD~Fm~~v~~~ 441 (842)
T PRK12364 363 QGVAGGVIRWIKLANDTAVAVDQLG-MRQGAVAVYLDVWHKDIPEFLQLRTNNGDDRMKAHDVFPAVCYPDLFWKMVRDD 441 (842)
T ss_pred CCCCCChHHHHHHHHHHHHHHHhCC-cCCCceeEEEeCCCccHHHHHHHhccCCchhhhhhhcchhheeCHHHHHHHHhC
Confidence 9999999999999999999999999 899999999999999999999999999999999999999999999999999986
Q ss_pred --CceEEecCCCCC-----CchhhhhhhHHHHHHHHHHcC-ceeEEEeHHHHHHHHHHHHHhhCCceeEechhhhhhCCC
Q 003575 346 --GKWSLFCPSDAS-----GLADSWGIEFEHLYSQYEEEG-RAKMVISARKLWFEILNSQIETGTPYMLFKDSCNRKSNQ 417 (810)
Q Consensus 346 --~~w~Lf~P~~~~-----~L~~~~g~eF~~~Y~~~e~~~-~~~~~v~Ar~l~~~I~~~~~etG~P~i~f~D~~Nr~~~~ 417 (810)
++|+||+|+++| +|.+.||++|+++|.+|++++ ..+++|+||+||++|++++|+||+|||+|+|++|++||+
T Consensus 442 ~~~~w~Lf~P~~~~~~~g~~l~~~yg~~f~~~Y~~~~~~~~~~~~~v~Ar~L~~~I~~~~~etG~P~i~f~D~~N~~~~~ 521 (842)
T PRK12364 442 INQSWYLFCPHEILTVKGYALEDYYGEEWEKRYLDCVNDARISKRSIPIKDLVRLILKSAVETGTPFTFNRDTVNRANPN 521 (842)
T ss_pred CCCceEeecccccccccccchhhhcccHHHHHHHHHHhcccceeEEEEHHHHHHHHHHHHHHhCCCeeEehHHHhhcCCC
Confidence 899999999999 899999999999999999864 568999999999999999999999999999999999999
Q ss_pred CCCCeEEeecCCccccccCCC-----------------------CCceeeeccccCchhhhhccCCccccccccccccCC
Q 003575 418 QNLGTIKSSNLCTEIVEFSSP-----------------------EETAVCNLASIALPRYVREKGVPVQSNVSKLVGSRD 474 (810)
Q Consensus 418 ~~~g~I~~sNlC~EI~~~~~~-----------------------~e~~~CNL~SInL~~~v~~~~~~~~~~~~~~~g~~~ 474 (810)
+|.|+|++||||+||+|+++| +++++|||+||||++|+
T Consensus 522 ~~~g~I~~SNlC~EI~q~~~p~~~~~~~~~~~d~~~~~~~~~~~~~~~~CNL~SinL~~~~------------------- 582 (842)
T PRK12364 522 KHKGMIYCSNLCTEIAQNMSAIETVSTEIETEDGDTVVVTTTRPGDFVVCNLASLSLGNID------------------- 582 (842)
T ss_pred CcCCeeEEecCcccccccCCccccccccccccccccccccccCCCCeeEEEcHHHHhhccc-------------------
Confidence 999999999999999998754 47889999999999985
Q ss_pred CCCccCCHHHHHHHHHHHHHHHHHHHhcCCCChHHHHHHhhccCCceeecchHHHHHHHcCCCCCCHHHHHHHHHHHHHH
Q 003575 475 SKNRLFDFERLAEVTKIITENLNKIIDVNHYPIETTRRSNLRHRPIGIGIQGLADTFILLGLPFESPEAQQLNKDIFETI 554 (810)
Q Consensus 475 ~~~~~fD~~~l~~~v~~avr~LD~vId~~~~p~~~~~~~~~~~R~iGlGv~Glad~L~~~gi~y~S~ea~~l~~~i~e~i 554 (810)
.||++.|+++|+++||+||+|||++.||+|+++++|+++|+||||+|||||+|+++|++|+|+||++|+++|||+|
T Consensus 583 ----~~d~~~l~~~v~~~vr~LDnVID~~~yp~~~~~~~n~~~R~IGLGvmGlad~L~~~gi~Y~S~ea~~l~~~i~e~i 658 (842)
T PRK12364 583 ----LEDEEELEEVVRTVVRALDNVIDLNFYPVPYAQITNKRYRSIGLGVSGYHHALAKNGIRWESEEHLEFADRVFERI 658 (842)
T ss_pred ----cccHHHHHHHHHHHHHHHHHHHhcCCCchHHHHHHHHhccccccchHHHHHHHHHCCCCcCCHHHHHHHHHHHHHH
Confidence 2799999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHcCCCCCCCCCccccCccccccccCCCCCcccHHHHHHHHHhcCccccceeccCCCcchhhhcCCCc
Q 003575 555 YYHALKASAELAVKDGPYETYFGSPMSKGILQVDMWNITPSDRWDWSSLREMISKNGVRNSLLVAPMPTASTSQILGNNE 634 (810)
Q Consensus 555 ~~~a~~aS~eLAke~G~~~~f~~S~~~~G~l~~d~~~~~~~~~~dW~~Lr~~i~~~G~RNs~l~AiaPT~stS~i~g~s~ 634 (810)
+|+|++||++||+|+|+||.|++|+|++|.+ |+.|+.. ..+|++||++|++||+|||+++|||||||||+|+|+|+
T Consensus 659 ~~~a~~aS~eLA~E~G~~~~f~~S~~~~g~~-~~~~~~~---~~~W~~L~~~i~~~GlRNs~l~AiaPT~S~S~i~g~s~ 734 (842)
T PRK12364 659 NYAAIKASMEIAKEKGAYGYFEGSDWQTGAY-FRKRGYT---SEEWQRLAREVAENGMRNAYLLAVAPTSSTSIIAGTTA 734 (842)
T ss_pred HHHHHHHHHHHHHHhCCCCCCCcChhhccch-hhccCcc---hhhHHHHHHHHHHhCcchhheeccCCcHHHHHHcCCCC
Confidence 9999999999999999999999999999997 6766543 34899999999999999999999999999999999999
Q ss_pred cccccccceeeEEcccCceEEeCHHHHHHHHHcCCChHHHHHHHHhcCCcc--ccccCCchHHHhhccccccCChHHHHH
Q 003575 635 CFEPYTSNIYTRRVLSGEFIVVNKHLLKDLTELGLWSHALKTKIIYENGSV--SKISEIPEELKAIYKTVWEIKQKTLVD 712 (810)
Q Consensus 635 gieP~~s~~y~r~~~~g~~~~vn~~l~~~l~~~g~~~~~~~~~i~~~~Gsv--~~~~~lp~~~k~~y~tA~ei~~~~~i~ 712 (810)
||||+|+++|.+.. .|++ +.+|.+|++.+++|+|||||+|+++|+
T Consensus 735 gieP~~~~~~~~~~---------------------------------~~~~~~~~~~~l~~~~~~~y~tA~ei~~~~~I~ 781 (842)
T PRK12364 735 GVDPVMKRYFLEEK---------------------------------KGALMPRVAPELSDKTFWLYKNAHLIDQKWSIR 781 (842)
T ss_pred ccCcchHhHHHHhh---------------------------------cCCcccccCccCCHHHHHHhccHhcCCHHHHHH
Confidence 99999998775531 1222 336889999999999999999999999
Q ss_pred HHHHhCcccccccceeEeeCC-CChHHHHHHHHHHHHcCCceEEEEecCccc
Q 003575 713 MAADRGCYIDQSQSLNIHMEQ-PDHGKLTSLHFYAWSKGMKTGMYYLRTRAA 763 (810)
Q Consensus 713 ~~a~~Q~~vDqs~S~nl~~~~-~~~~~l~~~~~~Awk~GlKt~~yY~r~~~~ 763 (810)
|+|++|||||||||+|||+++ ++.++|.++|++|||+|||| +||+|+++.
T Consensus 782 ~~A~~Q~~IDqsiS~nl~~~~~~t~~~l~~~y~~Awk~GlKt-~yy~R~~~~ 832 (842)
T PRK12364 782 AAGVRQRHIDQAQSVNLYITNEFTMRQVLDLYLLAWEEGVKT-IYYVRSKSL 832 (842)
T ss_pred HHHHHhccchhhccCceecCCCCCHHHHHHHHHHHHHcCCCE-EEEEccCCc
Confidence 999999999999999999997 69999999999999999999 899999655
No 12
>PRK07187 ribonucleotide-diphosphate reductase subunit alpha; Validated
Probab=100.00 E-value=4.4e-158 Score=1386.67 Aligned_cols=624 Identities=26% Similarity=0.417 Sum_probs=563.1
Q ss_pred CCChHHHHHHHHHHHHHH-Hh--hhhhhHHHHHHHHHhhhhcCccccCcchHHHH-HHHhcHHHHHhhhcccccCCCChh
Q 003575 71 HPDYALLAGRVAVSNLHK-IT--KNSFSETIKDMYNYYNKRSGKKASLVADDVYE-IIMKNAACLDGAIIYDRDFDFDYF 146 (810)
Q Consensus 71 ~p~y~~lA~rl~~~~l~k-~~--~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~-~~~~~~~~l~~~i~~~rd~~~~y~ 146 (810)
.-+.+.+|+|+++..++| ++ +++|.+.+..| +..++|++++++ |..++++++.+.++..||..|+|+
T Consensus 25 ~~~~d~~A~~~~~~~~~~~~~~~~~~~~~~~~~l---------v~~~~y~~~~~~~y~~~~l~~~~~~~~~~~~~~~~y~ 95 (721)
T PRK07187 25 HFDSDKEAVERYLEEHVEPNQKKFNSLEEKLAYL---------VNNGYYEQEILDAYSFDQIEELFHYAYQYNHRFLSFM 95 (721)
T ss_pred cccchHHHHHHHHHHHhhhccccccCHHHHHHHH---------HHcChhhHHHHhhCCHHHHHHHHhHhhhccccccchH
Confidence 347789999999999998 57 45665444333 223578888875 777778888888887787778999
Q ss_pred hHHHHHHhhcccc-CCc-ccCCHHHHHHHHHhhhccCChHHHHHHHHHHhcCceecCCccccccCCC-CCCCcccccccc
Q 003575 147 GFKTLERSYLLKM-DSR-VVERPQHMLMRVSVGIHKDDTDSALKTYHLMSQHWFTHATPTLFNAGTP-QPQLSSCFLLCM 223 (810)
Q Consensus 147 g~~~l~~~Yllk~-~g~-~~E~pq~~~~RVA~~l~~~~~~~~~~~y~~ls~~~~~~atP~l~naGt~-~~~lsSCfl~~~ 223 (810)
|+++|+++|++|. +|+ ++|+||+++||||++++.++.+.+++||++|++++|+||||||+|||++ ++|||||||+++
T Consensus 96 g~~~l~~rYllk~~~~~~~~E~pq~~~~~~Al~l~~~~~~~~~~~y~~~~~~~f~paTPtl~NaG~~~~~qlsSCFl~~v 175 (721)
T PRK07187 96 GAMKFYNSYALKTFDGKQYLETFEDRAVMNALFLADGDFTKAFDLLDQILLGRFQPATPTFLNAGKKRRGEYISCYLLRV 175 (721)
T ss_pred HHHHHHHhhccccCCCCeeeeCHHHHHHHHHHHhcCCCHHHHHHHHHHHHhCCcccCCcccccCCCCCCCCcCceEeccC
Confidence 9999999999994 465 4799999999999999988888899999999999999999999999998 699999999997
Q ss_pred cCCChHHHHHHHHHHHHHHHhcCCcceeeeeecCCCCcccCCCCCCCCcccHHHHHHHHHHHHhhCCCcccCceEEeecC
Q 003575 224 KDDSIEGIYDTLKKCAIISKSAGGIGLSIHNIRASGSYIHGTNGSSNGIVPMLQVFNDTARYVDQGGGKRKGAFAIYLEP 303 (810)
Q Consensus 224 ~~DS~~~I~~~~~~~a~isk~ggGiG~~~s~iR~~Gs~I~g~~g~ssG~vp~lk~~~~~~~~v~qgG~~Rrga~~~yl~~ 303 (810)
+||++||+++++++|++||.|||||+|||+|||+|++|+|++|.|+|||||||+||+++.+|+||| +||||+|+||++
T Consensus 176 -~Dsl~sI~~~~~~~a~isK~GGGiG~~~s~lR~~Gs~I~g~~g~ssGvvp~mk~~~~~~~~v~QgG-~RrGA~~vyL~~ 253 (721)
T PRK07187 176 -EDNMESISRAISTSLQLSKRGGGVALCLTNLREIGAPIKGIENQATGIIPVMKLLEDSFSYANQLG-QRQGAGAVYLHA 253 (721)
T ss_pred -CCCHHHHHHHHHHHHHHHhhCCeeeeeccccCCCCCcccCCCCCCCChHhHHHHHHHHHHHHHcCC-cccCceEEEEeC
Confidence 899999999999999999999999999999999999999999999999999999999999999999 899999999999
Q ss_pred CcccHHHHHHhhhhcCcccccccccceecccCHHHHHHHhcCCceEEecCCCCCCchhhhhhhHHH-----HHHHHHHcC
Q 003575 304 WHADIFEFLDLRKNQGKEECRARDLFYALWVPDLFMERVRDDGKWSLFCPSDASGLADSWGIEFEH-----LYSQYEEEG 378 (810)
Q Consensus 304 wH~DI~~Fl~~K~~~g~e~~r~~~l~~sv~ipD~Fm~rv~~~~~w~Lf~P~~~~~L~~~~g~eF~~-----~Y~~~e~~~ 378 (810)
|||||++||++|+++|+++.|++++++||||||+||++|++|++|+||+|+++ .++||++|++ .|.++++++
T Consensus 254 wHpDI~eFL~~K~~~gde~~r~~~l~~~v~ipD~Fm~~v~~d~~w~Lf~P~~~---~~~yg~~~~~~~~~~~Y~~~~~~~ 330 (721)
T PRK07187 254 HHPDVLTFLDTKRENADEKIRIKSLSLGLVIPDITFELAKENKDMALFSPYDI---KREYGKPMSDISITEEYYNLLANP 330 (721)
T ss_pred CCccHHHHHHHhccccchhhhhccchHHhcccHHHHHHHHcCCCeEeECcchh---hHhhCcchhhhhhHHHHHHHHhcc
Confidence 99999999999999999999999999999999999999999999999999984 6889986654 588888754
Q ss_pred -ceeEEEeHHHHHHHHHHHHHhhCCceeEechhhhhhCCCCCCCeEEeecCCccccccCCCCC------------ceeee
Q 003575 379 -RAKMVISARKLWFEILNSQIETGTPYMLFKDSCNRKSNQQNLGTIKSSNLCTEIVEFSSPEE------------TAVCN 445 (810)
Q Consensus 379 -~~~~~v~Ar~l~~~I~~~~~etG~P~i~f~D~~Nr~~~~~~~g~I~~sNlC~EI~~~~~~~e------------~~~CN 445 (810)
..+++|+||+||++|+++||+||+|||+|+|++|++||++|.|+|++||||+||+|+++|++ +++||
T Consensus 331 ~i~k~~V~AreL~~~I~~~~~etG~Pyi~f~D~iNr~np~~~~G~I~~SNlC~EI~q~~~p~~~~~~~~~~~~g~~~~CN 410 (721)
T PRK07187 331 AIKKTYISARKLFQTIAELHFESGYPYLLFDDTVNKRNPHAKKGRIVMSNLCSEIAQVSTPSTFNEDLSFKKIGEDICCN 410 (721)
T ss_pred ccceeEecHHHHHHHHHHHHHHHCCCeEEEhHHHhhcCCcccCCceeeccccccccccCCchhcccccccccCCCcceee
Confidence 45678999999999999999999999999999999999999999999999999999998764 68999
Q ss_pred ccccCchhhhhccCCccccccccccccCCCCCccCCHHHHHHHHHHHHHHHHHHHhcCCC-ChHHHHHHhhccCCceeec
Q 003575 446 LASIALPRYVREKGVPVQSNVSKLVGSRDSKNRLFDFERLAEVTKIITENLNKIIDVNHY-PIETTRRSNLRHRPIGIGI 524 (810)
Q Consensus 446 L~SInL~~~v~~~~~~~~~~~~~~~g~~~~~~~~fD~~~l~~~v~~avr~LD~vId~~~~-p~~~~~~~~~~~R~iGlGv 524 (810)
|+||||++|+.+ .+.|+++|+++||+||+|||.+.+ |+|+++++|+++|+||||+
T Consensus 411 LgSiNL~~~v~~------------------------~~~~~~~v~~avR~LDnVId~~d~~~~p~~~~~n~~~R~IGLGv 466 (721)
T PRK07187 411 LGSLNIAKAMES------------------------GPEFEQLIYTSIRALDRVSRVSDLSCAPSIEKGNAANHAVGLGA 466 (721)
T ss_pred CHHHHHHHHhcc------------------------hhhHHHHHHHHHHHHHHHhhhhccCccHHHHHHHHhcCcccchH
Confidence 999999999853 256789999999999999999865 7899999999999999999
Q ss_pred chHHHHHHHcCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCCCCCCccccCcccccc--------ccC----
Q 003575 525 QGLADTFILLGLPFESPEAQQLNKDIFETIYYHALKASAELAVKDGPYETYFGSPMSKGILQVDM--------WNI---- 592 (810)
Q Consensus 525 ~Glad~L~~~gi~y~S~ea~~l~~~i~e~i~~~a~~aS~eLAke~G~~~~f~~S~~~~G~l~~d~--------~~~---- 592 (810)
|||||+|+++||+|+|+||++|+++|||+|+|+|++||++||+|+|+||.|++|+|++|.+ |+. |..
T Consensus 467 mGlad~La~lgi~Y~S~eA~~~~~~i~e~i~~~A~~aS~eLAkErG~fp~f~~S~~~~G~~-~~~~~~~~~~~~~~~~~~ 545 (721)
T PRK07187 467 MNLHGFLATNHIYYDSKEAVDFTDLFFYTMAYYAFKASNQLAKEKGAFAGFELSKYADGSY-FDKYTKEDAKKWTPKTAK 545 (721)
T ss_pred HHHHHHHHHCCCCcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCCcccChhhccch-hhhhhhccccccCcchhh
Confidence 9999999999999999999999999999999999999999999999999999999999987 333 321
Q ss_pred ----------CCCCcccHHHHHHHHHhcCccccceeccCCCcchhhhcCCCccccccccceeeEEcccCceEEeCHHHHH
Q 003575 593 ----------TPSDRWDWSSLREMISKNGVRNSLLVAPMPTASTSQILGNNECFEPYTSNIYTRRVLSGEFIVVNKHLLK 662 (810)
Q Consensus 593 ----------~~~~~~dW~~Lr~~i~~~G~RNs~l~AiaPT~stS~i~g~s~gieP~~s~~y~r~~~~g~~~~vn~~l~~ 662 (810)
..+..++|++||++|++||+|||+++|||||||||+|+|+|+||||+|+++|.|+...+....+
T Consensus 546 ~~~~~~~~~~~~~~~~~W~~L~~~i~k~GlRNs~l~AiAPTgSiS~i~g~s~gIEP~~s~~~~R~~~~~~~~~~------ 619 (721)
T PRK07187 546 VKELLQKYGVTIPTQADWQELVEDIKKTGLANSHLLAVAPTGSISYLSSCTPSLQPVVAPVEVRKEGKLGRIYV------ 619 (721)
T ss_pred hhhhhhhccccccchhhHHHHHHHHHHhCcccceeeeeCCcchHHHHhCCCcchhHhhhhhheeeccCCceEEc------
Confidence 1123678999999999999999999999999999999999999999999999998644322211
Q ss_pred HHHHcCCChHHHHHHHHhcCCccccccCCchHHHhhc-cccccCChHHHHHHHHHhCcccccccceeEeeCC-CChHHHH
Q 003575 663 DLTELGLWSHALKTKIIYENGSVSKISEIPEELKAIY-KTVWEIKQKTLVDMAADRGCYIDQSQSLNIHMEQ-PDHGKLT 740 (810)
Q Consensus 663 ~l~~~g~~~~~~~~~i~~~~Gsv~~~~~lp~~~k~~y-~tA~ei~~~~~i~~~a~~Q~~vDqs~S~nl~~~~-~~~~~l~ 740 (810)
..|.+|++.+++| +|||||+|+++|+|+|++|||||||||+|||+++ ++.++|.
T Consensus 620 ------------------------~~~~l~~~~~~~y~~tA~eI~~~~~I~~~A~~Qk~IDqsiS~tl~~~~~~t~~dl~ 675 (721)
T PRK07187 620 ------------------------PAYKIDQDNYAYYERGAYEVGPKPIIDIVAAAQKHVDQAISLTLFMTDQATTRDLN 675 (721)
T ss_pred ------------------------ccccCCHHHHHHHhhhHHhcCHHHHHHHHHHHhhhccccccceeeCCCCCCHHHHH
Confidence 1245777888899 9999999999999999999999999999999996 6899999
Q ss_pred HHHHHHHHcCCceEEEEecCcccc
Q 003575 741 SLHFYAWSKGMKTGMYYLRTRAAA 764 (810)
Q Consensus 741 ~~~~~Awk~GlKt~~yY~r~~~~~ 764 (810)
++|++|||+|||| +||+|+++..
T Consensus 676 ~~y~~Awk~GlKt-~YY~Rt~~~~ 698 (721)
T PRK07187 676 KAYIQAFKQKCAS-IYYVRVRQDV 698 (721)
T ss_pred HHHHHHHHcCCCE-EEEEeehhhh
Confidence 9999999999999 9999996554
No 13
>PRK07632 ribonucleotide-diphosphate reductase subunit alpha; Validated
Probab=100.00 E-value=7.9e-157 Score=1372.22 Aligned_cols=575 Identities=26% Similarity=0.453 Sum_probs=532.0
Q ss_pred cHHHHHhhhcccccCCC---ChhhHHHHHHhhccccCC--cccCCHHHHHHHHHhhhccCChHHHHHHHHHHhcCceecC
Q 003575 127 NAACLDGAIIYDRDFDF---DYFGFKTLERSYLLKMDS--RVVERPQHMLMRVSVGIHKDDTDSALKTYHLMSQHWFTHA 201 (810)
Q Consensus 127 ~~~~l~~~i~~~rd~~~---~y~g~~~l~~~Yllk~~g--~~~E~pq~~~~RVA~~l~~~~~~~~~~~y~~ls~~~~~~a 201 (810)
+.++|++++++.||+.| +|+|+++|+++|++|.++ .++|+||++|||||++|+.++.+++++||++|++++|+||
T Consensus 72 ~~~~l~~~~~~~~~~~~~~~~~~g~~~~~~~Y~lk~~~~~~~~E~~q~~~~~vAl~l~~~~~~~a~~~y~~ls~~~f~pa 151 (699)
T PRK07632 72 SEEDLIEVTDYAYSIKFNFASYMSASKFYKDYALKTNDKKQYLEDYEDHVAIVALYLANGDKAKAKQFISAMVEQRYQPA 151 (699)
T ss_pred CHHHHHHHHhHHhhccccccchhHHHHHHhhhccccCCCCeEEeCHHHHHHHHHHHHcCCCHHHHHHHHHHHHcCCeecC
Confidence 45566666666655554 688999999999999543 3789999999999999999899999999999999999999
Q ss_pred CccccccCCC-CCCCcccccccccCCChHHHHHHHHHHHHHHHhcCCcceeeeeecCCCCcccCCCCCCCCcccHHHHHH
Q 003575 202 TPTLFNAGTP-QPQLSSCFLLCMKDDSIEGIYDTLKKCAIISKSAGGIGLSIHNIRASGSYIHGTNGSSNGIVPMLQVFN 280 (810)
Q Consensus 202 tP~l~naGt~-~~~lsSCfl~~~~~DS~~~I~~~~~~~a~isk~ggGiG~~~s~iR~~Gs~I~g~~g~ssG~vp~lk~~~ 280 (810)
||||+|+|++ ++|||||||+.+ +||++||++++++++++||.|||||+|+|+|||+|++|+|++|.|+|||||||+||
T Consensus 152 TPtl~NaG~~~~~qlsSCFl~~v-~Dsl~sI~~~~~~~a~lsK~GGGvG~~~s~lR~~Gs~I~g~~g~ssGvvp~mk~~d 230 (699)
T PRK07632 152 TPTFLNAGRARRGELVSCFLLEV-DDSLNSINFIDSTAKQLSKIGGGVAINLSKLRARGEAIKGIKGAAKGVLPVAKLLE 230 (699)
T ss_pred CCcccCCCCCCCCCeeeEEeCCC-CCCHHHHHHHHHHHHHHHhcCCeEEecccccCCCCCcccCCCCCCCCHHHHHHHHH
Confidence 9999999997 689999999997 89999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHhhCCCcccCceEEeecCCcccHHHHHHhhhhcCcccccccccceecccCHHHHHHHhcCCceEEecCCCCCCch
Q 003575 281 DTARYVDQGGGKRKGAFAIYLEPWHADIFEFLDLRKNQGKEECRARDLFYALWVPDLFMERVRDDGKWSLFCPSDASGLA 360 (810)
Q Consensus 281 ~~~~~v~qgG~~Rrga~~~yl~~wH~DI~~Fl~~K~~~g~e~~r~~~l~~sv~ipD~Fm~rv~~~~~w~Lf~P~~~~~L~ 360 (810)
+++.+++||| +||||+|+||++|||||++||++|+++|+++.|++++|+||||||+|||+|++|++|+||+|+++ .
T Consensus 231 ~~~~~v~QgG-~RrGA~avyL~~wHpDI~~FL~~K~~~gde~~r~~~l~~~v~ipD~Fme~v~~d~~w~Lf~P~~~---~ 306 (699)
T PRK07632 231 GGFSYADQLG-QRPGAGAVYLNIFHYDVEEFLDTKKVNADEDLRLSTISTGLIVPSKFFELAKEGKDFYMFAPHTV---Y 306 (699)
T ss_pred HHHHHHHhcC-ccccceeEEEeCCCccHHHHHHHhccccchhhHHHhcchhheecHHHHHHHHcCCCeEEECCccc---h
Confidence 9999999999 89999999999999999999999999999999999999999999999999999999999999986 5
Q ss_pred hhhhh-----hHHHHHHHHHHcC-ceeEEEeHHHHHHHHHHHHHhhCCceeEechhhhhhCCCCCCCeEEeecCCccccc
Q 003575 361 DSWGI-----EFEHLYSQYEEEG-RAKMVISARKLWFEILNSQIETGTPYMLFKDSCNRKSNQQNLGTIKSSNLCTEIVE 434 (810)
Q Consensus 361 ~~~g~-----eF~~~Y~~~e~~~-~~~~~v~Ar~l~~~I~~~~~etG~P~i~f~D~~Nr~~~~~~~g~I~~sNlC~EI~~ 434 (810)
+.||+ +|+++|+++++++ +.+++|+||+||++|+++||+||+|||+|+|++|++||+++.|+|++||||+||+|
T Consensus 307 ~~yG~~~~~~~~~~~Y~~~~~~~~i~~~~I~AreL~~~I~~~~~etG~Pyi~f~D~~N~~np~~~~G~I~~SNlC~EI~~ 386 (699)
T PRK07632 307 KEYGVTLDDIDLEEMYDDLVANPNVKKKKKNAREMLNKIAQTQLQSGYPYLMFKDNANKVHPNSNIGQIKMSNLCTEIFQ 386 (699)
T ss_pred hhcCcccccchHHHHHHHHHhcCCeeecccCHHHHHHHHHHHHHHhCCCeEEeHHHHhhcCCCCCCCcEEecCCcccccc
Confidence 66776 7999999999875 45789999999999999999999999999999999999999999999999999999
Q ss_pred cCC---------CCCc---eeeeccccCchhhhhccCCccccccccccccCCCCCccCCHHHHHHHHHHHHHHHHHHHhc
Q 003575 435 FSS---------PEET---AVCNLASIALPRYVREKGVPVQSNVSKLVGSRDSKNRLFDFERLAEVTKIITENLNKIIDV 502 (810)
Q Consensus 435 ~~~---------~~e~---~~CNL~SInL~~~v~~~~~~~~~~~~~~~g~~~~~~~~fD~~~l~~~v~~avr~LD~vId~ 502 (810)
++. ++++ ++|||+||||++|+++ +.|+++|+++||+||+|||.
T Consensus 387 ~~~~s~~~~~~~~~~~g~~~~CNLgSiNL~~~v~~-------------------------~~l~~~v~~avr~LdnViD~ 441 (699)
T PRK07632 387 LQETSIINDYGIEDEIKRDISCNLGSLNIVNVMES-------------------------KKFRDSVHSGMDALTVVSDV 441 (699)
T ss_pred cCCccccccccccccccccceeecchhhHHHhccc-------------------------chHHHHHHHHHHHHHHHHHh
Confidence 752 2333 4999999999999853 57899999999999999999
Q ss_pred CCCC-hHHHHHHhhccCCceeecchHHHHHHHcCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHcC-CCCCCCCCcc
Q 003575 503 NHYP-IETTRRSNLRHRPIGIGIQGLADTFILLGLPFESPEAQQLNKDIFETIYYHALKASAELAVKDG-PYETYFGSPM 580 (810)
Q Consensus 503 ~~~p-~~~~~~~~~~~R~iGlGv~Glad~L~~~gi~y~S~ea~~l~~~i~e~i~~~a~~aS~eLAke~G-~~~~f~~S~~ 580 (810)
+.|| +|+++++|+++|+||||+|||||+|+++|++|+|+||++|+++|||+|+|+|++||++||+|+| +||.|++|+|
T Consensus 442 ~~~p~~p~~~~~n~~~R~IGLGvmGLad~La~~gi~Y~S~eA~~~~~~ife~i~~~A~~aS~eLAkE~G~~f~~f~~S~~ 521 (699)
T PRK07632 442 ANIQNAPGVRKANSELHSVGLGVMNLHGYLAKNKIGYESEEAKDFANTFFMMMNFYSIERSMEIAKERGETYQDFEKSDY 521 (699)
T ss_pred hcCCCCHHHHHHhhccCcccchHHHHHHHHHHcCCCcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCCccCcChh
Confidence 9998 9999999999999999999999999999999999999999999999999999999999999999 9999999999
Q ss_pred ccCccccccccCC-----------------CCCcccHHHHHHHHHhcCccccceeccCCCcchhhhcCCCccccccccce
Q 003575 581 SKGILQVDMWNIT-----------------PSDRWDWSSLREMISKNGVRNSLLVAPMPTASTSQILGNNECFEPYTSNI 643 (810)
Q Consensus 581 ~~G~l~~d~~~~~-----------------~~~~~dW~~Lr~~i~~~G~RNs~l~AiaPT~stS~i~g~s~gieP~~s~~ 643 (810)
++|++ |+.|... .+..+||++|+++|++||+|||+++|||||||||+|+|+|+||||+++++
T Consensus 522 ~~G~~-f~~~~~~~~~~~~~~v~~~~~~~~~~~~~dW~~L~~~i~k~GlRNs~l~AiAPTgSiS~i~g~s~siePi~s~i 600 (699)
T PRK07632 522 ANGKY-FEKYTTQDFEPKFEKVRELFEGMHIPTKEDWKKLQQDVEQYGLYHAYRLAIAPTQSISYVQNATSSVMPIVDQI 600 (699)
T ss_pred hccch-HhhhhhcccchhhhhhhhhhcccCCCchhhHHHHHHHHHHhCcccccccccCCchHHHHHhCCCccHHHHHHHH
Confidence 99998 7776421 12467999999999999999999999999999999999999999999998
Q ss_pred eeEEcccCceEEeCHHHHHHHHHcCCChHHHHHHHHhcCCccccccCCchHHHhhccccccCChHHHHHHHHHhCccccc
Q 003575 644 YTRRVLSGEFIVVNKHLLKDLTELGLWSHALKTKIIYENGSVSKISEIPEELKAIYKTVWEIKQKTLVDMAADRGCYIDQ 723 (810)
Q Consensus 644 y~r~~~~g~~~~vn~~l~~~l~~~g~~~~~~~~~i~~~~Gsv~~~~~lp~~~k~~y~tA~ei~~~~~i~~~a~~Q~~vDq 723 (810)
+.|... .+++++.+|.+|++.+++|+|||||+|+++|+|+|++||||||
T Consensus 601 ~~r~~~-------------------------------~~~~~~~~p~l~~~~~~~y~tA~ei~~~~~I~~~A~~Q~~IDQ 649 (699)
T PRK07632 601 ERRTYG-------------------------------NAETFYPMPFLSPQTMWYYKSAFNTDQMKLIDLIATIQTHIDQ 649 (699)
T ss_pred HhhhcC-------------------------------CCCceeeCccCCHHHHHHhccHhhCCHHHHHHHHHHHcccchh
Confidence 766431 2456678899999999999999999999999999999999999
Q ss_pred ccceeEeeCC-CChHHHHHHHHHHHHcCCceEEEEecCcccc
Q 003575 724 SQSLNIHMEQ-PDHGKLTSLHFYAWSKGMKTGMYYLRTRAAA 764 (810)
Q Consensus 724 s~S~nl~~~~-~~~~~l~~~~~~Awk~GlKt~~yY~r~~~~~ 764 (810)
|||+|||+++ .+.++|.++|++|||+|||| +||+|+++.+
T Consensus 650 siS~tl~~~~~~t~~dl~~~y~~Awk~GlKt-iYY~Rt~~~~ 690 (699)
T PRK07632 650 GISTILYVNSEISTRELARLYVYAHHKGLKS-LYYTRNKLLS 690 (699)
T ss_pred hhcCceecCCCCCHHHHHHHHHHHHHcCCCe-EEEeeccccc
Confidence 9999999997 59999999999999999999 9999996654
No 14
>TIGR02506 NrdE_NrdA ribonucleoside-diphosphate reductase, alpha subunit. This model identifies RNR's in diverse clades of bacteria, eukaryotes as well as numerous DNA viruses and phage.
Probab=100.00 E-value=2.1e-153 Score=1346.22 Aligned_cols=595 Identities=49% Similarity=0.824 Sum_probs=570.0
Q ss_pred hhhHHHHHHhhcccc--CCcccCCHHHHHHHHHhhhcc-----CChHHHHHHHHHHhcCceecCCccccccCCCCCCCcc
Q 003575 145 YFGFKTLERSYLLKM--DSRVVERPQHMLMRVSVGIHK-----DDTDSALKTYHLMSQHWFTHATPTLFNAGTPQPQLSS 217 (810)
Q Consensus 145 y~g~~~l~~~Yllk~--~g~~~E~pq~~~~RVA~~l~~-----~~~~~~~~~y~~ls~~~~~~atP~l~naGt~~~~lsS 217 (810)
|+|+++|+++|++|. +|+++|+||++|||||++++. ++.+++++||++|++++|+||||||+|+||+++||+|
T Consensus 1 ~~g~~~l~~~Y~lk~~~~~~~~E~p~~~~~rvA~~~a~~e~~~~~~~~~~~fy~~l~~~~~~patp~l~naGt~~~~lss 80 (617)
T TIGR02506 1 YMGLKELYNRYLLRNAATGAIYESPQEAYMRVAMGLASLEPKDTRLADAIRFYDLLSRLKISPATPTLFNAGTPRGQLSS 80 (617)
T ss_pred CchHHHHHHhhceecCCCCCcccCHHHHHHHHHHHHHhhccccchHHHHHHHHHHHHcCCeecCChhhhcCCCCCCCCcc
Confidence 789999999999983 356899999999999999985 2456899999999999999999999999999999999
Q ss_pred cccccccCCChHHHHHHHHHHHHHHHhcCCcceeeeeecCCCCcccCCCCCCCCcccHHHHHHHHHHHHhhCCCcccCce
Q 003575 218 CFLLCMKDDSIEGIYDTLKKCAIISKSAGGIGLSIHNIRASGSYIHGTNGSSNGIVPMLQVFNDTARYVDQGGGKRKGAF 297 (810)
Q Consensus 218 Cfl~~~~~DS~~~I~~~~~~~a~isk~ggGiG~~~s~iR~~Gs~I~g~~g~ssG~vp~lk~~~~~~~~v~qgG~~Rrga~ 297 (810)
|||+.+.+||+++|+++++++++++|+|||||+|+|+|||+|++|+|++|.||||||||++||+++.+|+||| +||||.
T Consensus 81 Cfv~~~~dds~~~I~~~~~~~a~l~k~ggGvG~~~s~lR~~G~~i~~~~~~ssG~v~f~~~~d~~~~~v~qgg-~Rrga~ 159 (617)
T TIGR02506 81 CFLLDVTDDTLESIYKAIDDVAQLSKHGGGIGLNLTKLRAIGSPIRGTNNASKGIIPFLKLLDSSVEAVNQGG-KRPGAA 159 (617)
T ss_pred eEecCCCCCCHHHHHHHHHHHHHHHhcCCeEEecccccCCCCCccCCCCCCCCCceeHHHHHHHHHHHHhcCC-ccccce
Confidence 9999987899999999999999999999999999999999999999999999999999999999999999998 899999
Q ss_pred EEeecCCcccHHHHHHhhhhcCcccccccccceecccCHHHHHHHhcCCceEEecCCCCCCchhhhhhhHHHHHHHHHHc
Q 003575 298 AIYLEPWHADIFEFLDLRKNQGKEECRARDLFYALWVPDLFMERVRDDGKWSLFCPSDASGLADSWGIEFEHLYSQYEEE 377 (810)
Q Consensus 298 ~~yl~~wH~DI~~Fl~~K~~~g~e~~r~~~l~~sv~ipD~Fm~rv~~~~~w~Lf~P~~~~~L~~~~g~eF~~~Y~~~e~~ 377 (810)
|+||++|||||++||++|+++|+++.|++++|+||+|||+|||||++|++|+||+|++++.|.+.||++|++.|.+++++
T Consensus 160 ~~~l~~~HpDi~~Fi~~k~~~~~~~~r~~~~n~sv~i~D~Fm~~v~~d~~w~Lf~p~~~~~l~~~~~~~f~~~Y~~~~~~ 239 (617)
T TIGR02506 160 AVYLEVWHPDIEEFLDLKKNNGDERRRCDNLFYGLWIPDLFMKRVEEDKDWYLFSPYDVPGLYGLYGEEFEEEYERLEKD 239 (617)
T ss_pred EEEEeCCCccHHHHHHhccccCchhhHHHhcchhhccCHHHHHHHHcCCCeEEECccccchhhhcccHHHHHHHHHHHhc
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999987
Q ss_pred CceeE---EEeHHHHHHHHHHHHHhhCCceeEechhhhhhCCCC-CCCeEEeecCCccccccCCCC---CceeeeccccC
Q 003575 378 GRAKM---VISARKLWFEILNSQIETGTPYMLFKDSCNRKSNQQ-NLGTIKSSNLCTEIVEFSSPE---ETAVCNLASIA 450 (810)
Q Consensus 378 ~~~~~---~v~Ar~l~~~I~~~~~etG~P~i~f~D~~Nr~~~~~-~~g~I~~sNlC~EI~~~~~~~---e~~~CNL~SIn 450 (810)
+...+ +|+||+||++|++++|+||+|||+|+|++|+++|.+ +.|+|++||||+||+|++.+. ++++|||+|||
T Consensus 240 ~~~~~~~~~v~Arel~~~I~~~~~~tG~Pgi~f~D~~N~~~~~~~~~~~I~~sNpC~Ei~l~~~~~~~g~~~~CnL~SiN 319 (617)
T TIGR02506 240 VEARKKIRKVSARDLMKDILRTRVETGRPYILFKDAVNKHNPFKTGGGAIKMSNLCTEITQPTDDSHKGETAVCNLASVN 319 (617)
T ss_pred cccceeeeEeeHHHHHHHHHHHHHHHcCCceEecchhhhcCCcccCCceEEecCcCccccccCCcccCCceeEEEcHHHH
Confidence 65433 699999999999999999999999999999999987 678999999999999998765 78999999999
Q ss_pred chhhhhccCCccccccccccccCCCCCccCCHHHHHHHHHHHHHHHHHHHhcCCCChHHHHHHhhccCCceeecchHHHH
Q 003575 451 LPRYVREKGVPVQSNVSKLVGSRDSKNRLFDFERLAEVTKIITENLNKIIDVNHYPIETTRRSNLRHRPIGIGIQGLADT 530 (810)
Q Consensus 451 L~~~v~~~~~~~~~~~~~~~g~~~~~~~~fD~~~l~~~v~~avr~LD~vId~~~~p~~~~~~~~~~~R~iGlGv~Glad~ 530 (810)
|.+|+.++ .|||+.|+++|+++||+||+|||.+.||++++++.+++.|+||||+|||||+
T Consensus 320 L~~fv~~~--------------------~fD~~~l~~~v~~avr~LD~vid~~~~p~~~~~~~~~~~R~iGlG~~Glad~ 379 (617)
T TIGR02506 320 LANFVMED--------------------KFDFSELEDAVRIAVRFLDNVIDLQNYPTAPAAKSNQRRRSIGIGVMGLHDV 379 (617)
T ss_pred HHHHhccC--------------------CCCHHHHHHHHHHHHHHHHHHHhCCCCCcHHHHHHHHhcCccccchhHHHHH
Confidence 99999752 4999999999999999999999999999999999999999999999999999
Q ss_pred HHHcCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCCCCCCccccCccccccccCCCC-------CcccHHHH
Q 003575 531 FILLGLPFESPEAQQLNKDIFETIYYHALKASAELAVKDGPYETYFGSPMSKGILQVDMWNITPS-------DRWDWSSL 603 (810)
Q Consensus 531 L~~~gi~y~S~ea~~l~~~i~e~i~~~a~~aS~eLAke~G~~~~f~~S~~~~G~l~~d~~~~~~~-------~~~dW~~L 603 (810)
|+++|++|+|+||++|+++|||.|+++|+++|++||+|+|+||.|++|+|++|+++++.|...+. ...+|++|
T Consensus 380 L~~~gi~Y~S~ea~~l~~~i~e~i~~~a~~aS~eLA~e~G~f~~f~~s~~~~g~~~~~~~~~~~~~~~~~~~~~~~W~~L 459 (617)
T TIGR02506 380 LAKLGLPYDSEEARDLNDRIFEAIYYYAIKASAELAKEKGPFPGFSGSKYAKGWLHPDTWEKTIDPKTSMAPTEEDWEAL 459 (617)
T ss_pred HHHCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCccccCcchhhhhhcccchhcccccchhhHHHH
Confidence 99999999999999999999999999999999999999999999999999999999998876542 45799999
Q ss_pred HHHHHhcCccccceeccCCCcchhhhcCCCccccccccceeeEEcccCceEEeCHHHHHHHHHcCCChHHHHHHHHhcCC
Q 003575 604 REMISKNGVRNSLLVAPMPTASTSQILGNNECFEPYTSNIYTRRVLSGEFIVVNKHLLKDLTELGLWSHALKTKIIYENG 683 (810)
Q Consensus 604 r~~i~~~G~RNs~l~AiaPT~stS~i~g~s~gieP~~s~~y~r~~~~g~~~~vn~~l~~~l~~~g~~~~~~~~~i~~~~G 683 (810)
+++|++||+|||+++|||||||+|+|+|+|+||||+|+++|.|++.+|+|.++|++|+++|+++|+|++++++++....|
T Consensus 460 ~~~i~~~GlRNs~l~aiaPTgs~S~i~g~S~gieP~~a~~y~r~~~~g~~~~vn~~l~~~l~~~g~~~~~~~~~~~~~~g 539 (617)
T TIGR02506 460 RERIKEYGLRNSQLTALMPTASSSQLTGVTESIEPVFSNIFTKKTLSGEFLIPNKYLMKELEELGLWDADRRGDIVENVG 539 (617)
T ss_pred HHHHHHhCccccceeccCChHHHHHHcCCCCccCcccchheeEecCCceEEEecHHHHHHHHHcCCCHHHHHHHHHhhCC
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999988899
Q ss_pred ccccccCCchHHHhhccccccCChHHHHHHHHHhCcccccccceeEeeCC-CChHHHHHHHHHHHHcCCceEEEEecCc
Q 003575 684 SVSKISEIPEELKAIYKTVWEIKQKTLVDMAADRGCYIDQSQSLNIHMEQ-PDHGKLTSLHFYAWSKGMKTGMYYLRTR 761 (810)
Q Consensus 684 sv~~~~~lp~~~k~~y~tA~ei~~~~~i~~~a~~Q~~vDqs~S~nl~~~~-~~~~~l~~~~~~Awk~GlKt~~yY~r~~ 761 (810)
++|.++.+|++.+.+|+||+||+|++||+|||++|||||||||+|||+++ .+.++|.++|++|||+|||| |||||++
T Consensus 540 ~~~~~~~~~~~~~~~f~tA~di~~~~~i~~~a~~Q~~vDqsiS~tl~~~~~~~~~dv~~~y~~Aw~~GlK~-~YY~r~~ 617 (617)
T TIGR02506 540 SPQPIAAIPETLKYKYKTAYELDQEALIDMAADRQKFVDQSISLNLFLTEEVTAKDLLKLLLLAWKKGLKT-MYYCRSR 617 (617)
T ss_pred CccCCCCCChhHHHHhchHhcCCHHHHHHHHHHHhcccccccCCeeeCCCCCCHHHHHHHHHHHHHcCCCE-EEEeecC
Confidence 99999999999999999999999999999999999999999999999997 78999999999999999999 9999985
No 15
>PRK06406 ribonucleotide-diphosphate reductase subunit alpha; Validated
Probab=100.00 E-value=3.3e-152 Score=1342.79 Aligned_cols=652 Identities=30% Similarity=0.461 Sum_probs=585.9
Q ss_pred eEEccCCceeccChhHHHHHHHHHHhcCCC-CCCCHHHHHHHHHhhcCC--CCCHHHHHHHHHHHHHhhccCCCChHHHH
Q 003575 2 YVIKRDGRKEPVRFDKITARLKKLSYGLSK-EHCDPVLVAQKVCAGVYK--GVTTTQLDELAAETAAAMTVNHPDYALLA 78 (810)
Q Consensus 2 ~v~krdG~~e~~~~~ki~~~i~~~~~~l~~-~~v~~~~i~~~~~~~~~~--~itt~ei~~~~~~~a~~~~~~~p~y~~lA 78 (810)
+|+||||+.++|+.+||..+|.+|....+. +.-....++.+|...+.+ .++++|||+++.++..+.-...|+|..+|
T Consensus 6 ~ViKRDG~~v~Fd~~KI~~AI~kA~~av~~~~~~~~~~l~~~V~~~l~~~~~~sVeeIQDiVE~~L~~~g~~~~~~~~vA 85 (771)
T PRK06406 6 EVIKRDGTVVPFDKKKIAMAIYKAMLSVKNGSMEDAEELTDKVVERLKKYERPTVEQIQDIVEKVLMTKKINGKDFTDVA 85 (771)
T ss_pred eEEecCCccCCCCHHHHHHHHHHHHHhhCCCcHHHHHHHHHHHHHHHhccCCCCHHHHHHHHHHHHHhCCCcccchHHHH
Confidence 799999999999999999999998766531 111234566777666665 48999999999988877766788888877
Q ss_pred HHHHHHHHHHHhhhhhhHHHHHHHHHhhhhcCccccCcchHHHHHHHhcHHHHHhhhcccccCCCChhhHHHHHHhhccc
Q 003575 79 GRVAVSNLHKITKNSFSETIKDMYNYYNKRSGKKASLVADDVYEIIMKNAACLDGAIIYDRDFDFDYFGFKTLERSYLLK 158 (810)
Q Consensus 79 ~rl~~~~l~k~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~l~~~i~~~rd~~~~y~g~~~l~~~Yllk 158 (810)
....++..+++ ...+....|+.+||+.|++.|+++|.+|||+|
T Consensus 86 KaYI~YR~~r~-------------------------------------~~r~~k~~~~~~~~~~~~~~a~~vl~~RYl~k 128 (771)
T PRK06406 86 KSYILYREKRR-------------------------------------KIREEKELIGVKDDLKLTLNAIKVLEARYLLK 128 (771)
T ss_pred HHHHHHHHHHH-------------------------------------hccccccccCcccccccCHHHHHHHHHHHhcc
Confidence 65422211111 00111235778899999999999999999999
Q ss_pred -cCCcccCCHHHHHHHHHhhhccCC-------------------------------------------------------
Q 003575 159 -MDSRVVERPQHMLMRVSVGIHKDD------------------------------------------------------- 182 (810)
Q Consensus 159 -~~g~~~E~pq~~~~RVA~~l~~~~------------------------------------------------------- 182 (810)
.+|+++|+||+||||||++++..+
T Consensus 129 d~~g~~~E~p~~~f~rvA~~va~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 208 (771)
T PRK06406 129 DEDGKIIETPRQMFRRVARHIAIVEALYDDEVYDKTGKQKENAEVIGKLSVTQEDMLKRAFRYLKEEGIMKGDFEEFLDF 208 (771)
T ss_pred CCCCCEecCHHHHHHHHHHHHcchhhcccchhcccccccccccccccchhhhhhhhhhhhhhhhhhhccccccchhhhhh
Confidence 568899999999999999988532
Q ss_pred --------hHHHHHHHHHHhcCceecCCccccccCCCCCCCcccccccccCCChHHHHHHHHHHHHHHHhcCCcceeeee
Q 003575 183 --------TDSALKTYHLMSQHWFTHATPTLFNAGTPQPQLSSCFLLCMKDDSIEGIYDTLKKCAIISKSAGGIGLSIHN 254 (810)
Q Consensus 183 --------~~~~~~~y~~ls~~~~~~atP~l~naGt~~~~lsSCfl~~~~~DS~~~I~~~~~~~a~isk~ggGiG~~~s~ 254 (810)
.+++++||++|++++|+|+||||+|+|++++|||||||+++ +||++||+++++++|+++|.|||||+|||+
T Consensus 209 ~~~~~~~~~~~~~~fy~~ms~~~f~pasP~l~NaG~~~~qlssCFvl~v-~Dsle~I~~~~~~~a~i~k~GGGvG~~~S~ 287 (771)
T PRK06406 209 LKTKWDSIEEYINKFEEVMSNLKFVPNSPTLMNAGTKLGQLSACFVLPV-PDSIEGIFNALKYTAMIHKSGGGTGFSFSR 287 (771)
T ss_pred hccchhhHHHHHHHHHHHHHcCCEecCCHHHhcCCCCCCCeeeEEeCCC-CCCHHHHHHHHHHHHHHHhcCCceEEeccc
Confidence 23577999999999999999999999999999999999987 899999999999999999999999999999
Q ss_pred ecCCCCcccCCCCCCCCcccHHHHHHHHHHHHhhCCCcccCceEEeecCCcccHHHHHHhhhhcCcccccccccceeccc
Q 003575 255 IRASGSYIHGTNGSSNGIVPMLQVFNDTARYVDQGGGKRKGAFAIYLEPWHADIFEFLDLRKNQGKEECRARDLFYALWV 334 (810)
Q Consensus 255 iR~~Gs~I~g~~g~ssG~vp~lk~~~~~~~~v~qgG~~Rrga~~~yl~~wH~DI~~Fl~~K~~~g~e~~r~~~l~~sv~i 334 (810)
|||+|++|+|++|.||||||||++||+++.+|+||| +||||.|+||++|||||++||++|.+. ..+++++|+||+|
T Consensus 288 iRp~G~~i~~~~g~ssG~vsfm~~~d~~~~~i~QGG-~RrGA~m~~L~~~HpDI~eFI~~K~~~---~~~~~n~n~sV~i 363 (771)
T PRK06406 288 LRPKDDIVASTKGVASGPLSFMRIFDVTTDVIKQGG-KRRGANMGILSYHHPDIMEFITSKDSE---NKVLSNFNISVAV 363 (771)
T ss_pred cCCCCCccCCCCCcCCChhhHHHHHHHHHHHHHcCC-ccccceEEEecCCCccHHHHHHhcccc---cchhhcCceeEEe
Confidence 999999999999999999999999999999999998 899999999999999999999999643 2457899999999
Q ss_pred CHHHHHHHhcCCceEEecCCCCCCchhhhhhhHHHHHHHHHHcCceeEEEeHHHHHHHHHHHHHhhCCceeEechhhhhh
Q 003575 335 PDLFMERVRDDGKWSLFCPSDASGLADSWGIEFEHLYSQYEEEGRAKMVISARKLWFEILNSQIETGTPYMLFKDSCNRK 414 (810)
Q Consensus 335 pD~Fm~rv~~~~~w~Lf~P~~~~~L~~~~g~eF~~~Y~~~e~~~~~~~~v~Ar~l~~~I~~~~~etG~P~i~f~D~~Nr~ 414 (810)
||+||++|++|++|+|++|++ |..+++|+||+||++|++++|+||+|||+|+|++|++
T Consensus 364 ~D~FM~~v~~d~~~~L~~P~~----------------------g~~~~~v~AreL~~~I~~~a~~tGePgi~F~D~iNr~ 421 (771)
T PRK06406 364 TDEFFDKLDNDDYYPLRNPRN----------------------GKEVKRIKARQVWDLIITQAWKTGDPGVIFLDEINRK 421 (771)
T ss_pred CHHHHHHHHcCCCeEeecCCC----------------------CceeeeecHHHHHHHHHHHHHHHCCCeEEEhHhHHhc
Confidence 999999999999999999974 4568899999999999999999999999999999999
Q ss_pred CCCCCCCeEEeecCCccccccCCCCCceeeeccccCchhhhhccCCccccccccccccCCCCCccCCHHHHHHHHHHHHH
Q 003575 415 SNQQNLGTIKSSNLCTEIVEFSSPEETAVCNLASIALPRYVREKGVPVQSNVSKLVGSRDSKNRLFDFERLAEVTKIITE 494 (810)
Q Consensus 415 ~~~~~~g~I~~sNlC~EI~~~~~~~e~~~CNL~SInL~~~v~~~~~~~~~~~~~~~g~~~~~~~~fD~~~l~~~v~~avr 494 (810)
||+++.|+|.+||||+||++++ +++|||+||||++||++ ..|||+.|+++|+++||
T Consensus 422 n~~~~~G~I~~tNpCgEq~L~p----~~sCnLgSINL~~~v~~--------------------~~~D~~~l~~~v~~avr 477 (771)
T PRK06406 422 NPVKNLGEIESTNPCGEQPLLP----YESCNLGSINLSKFVEN--------------------GKIDWDRLRETVHIATR 477 (771)
T ss_pred CCCccCCceEeeccccccccCC----CcceechhhhHHHHhcc--------------------cCCCHHHHHHHHHHHHH
Confidence 9999999999999999998753 46999999999999964 26999999999999999
Q ss_pred HHHHHHhcCCCChHHHHHHhhccCCceeecchHHHHHHHcCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCC
Q 003575 495 NLNKIIDVNHYPIETTRRSNLRHRPIGIGIQGLADTFILLGLPFESPEAQQLNKDIFETIYYHALKASAELAVKDGPYET 574 (810)
Q Consensus 495 ~LD~vId~~~~p~~~~~~~~~~~R~iGlGv~Glad~L~~~gi~y~S~ea~~l~~~i~e~i~~~a~~aS~eLAke~G~~~~ 574 (810)
|||||||++.||+|+++++++++|+||||+|||||+|+++|++|+|+||++|+++||++|+++|+++|++||+|+|+||.
T Consensus 478 ~LDnvID~~~yPl~~~~~~~~~~R~IGLGvmGlad~L~~lgi~YdS~eA~~l~~~i~~~i~~~a~~aS~~LAkErG~fp~ 557 (771)
T PRK06406 478 FLDNVIDANKFPVPQIKEMTRMTRKIGLGVMGFADMLIKLGIPYNSEEALEIAEKVMKFINEESHRASQKLAEERGVFPA 557 (771)
T ss_pred HHHHHHhcccCchHHHHHHHhhcCCceechHHHHHHHHHcCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCC
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCCccccCccccccccCCCCCcccHHHHHHHHHhcCccccceeccCCCcchhhhcCCCccccccccceeeEEcccCc-e
Q 003575 575 YFGSPMSKGILQVDMWNITPSDRWDWSSLREMISKNGVRNSLLVAPMPTASTSQILGNNECFEPYTSNIYTRRVLSGE-F 653 (810)
Q Consensus 575 f~~S~~~~G~l~~d~~~~~~~~~~dW~~Lr~~i~~~G~RNs~l~AiaPT~stS~i~g~s~gieP~~s~~y~r~~~~g~-~ 653 (810)
|++|+|.+ ...|+|||++||||||||||+|+|+|+||||+|+++|.|++..|+ +
T Consensus 558 f~~s~~~~-------------------------~~~g~RNs~ltaiAPTgSiS~i~g~SsGIEP~fa~~y~R~v~~g~~~ 612 (771)
T PRK06406 558 WYGSEWEK-------------------------KGIKMRNSTTTTIAPTGTISIIAGCSSSIEPLFAIAFVRHVLNGQEL 612 (771)
T ss_pred cCccchhh-------------------------cCCcccccceeeeCCcchhhhhcCCCCccCccchhheEEEecCCcee
Confidence 99998853 124899999999999999999999999999999999999998875 7
Q ss_pred EEeCHHHHHHHHHcCCChHHHHHHHHhcCCccccccCCchHHHhhccccccCChHHHHHHHHHhCcccccccceeEeeCC
Q 003575 654 IVVNKHLLKDLTELGLWSHALKTKIIYENGSVSKISEIPEELKAIYKTVWEIKQKTLVDMAADRGCYIDQSQSLNIHMEQ 733 (810)
Q Consensus 654 ~~vn~~l~~~l~~~g~~~~~~~~~i~~~~Gsv~~~~~lp~~~k~~y~tA~ei~~~~~i~~~a~~Q~~vDqs~S~nl~~~~ 733 (810)
.++|++|.+.|++.|+|++++++++. ++|++|++ .+|++++.+|+|||||+|++||+|||++|||||||||+|||+++
T Consensus 613 ~~vn~~l~~~l~~~g~~~~~~~~~i~-~~gs~~~~-~~p~~~~~~f~tA~dI~~~~~i~m~A~~Qk~vDqsiSkTinlp~ 690 (771)
T PRK06406 613 LEVNPLFEEITRKRGLYSEELMRKVA-ETGNLQNI-DVPEDIKRIFVTAHEIDPQWHVLMQATFQRYCDSGVSKTINLRY 690 (771)
T ss_pred EEecHHHHHHHHHcCCCcHHHHHHHH-hCCCcccc-cCChHHHhhcccHHhCCHHHHHHHHHHHcccccCcccCceecCC
Confidence 89999999999999999999999875 68999999 69999999999999999999999999999999999999999996
Q ss_pred -CChHHHHHHHHHHHHcCCceEEEEecCcccccccc
Q 003575 734 -PDHGKLTSLHFYAWSKGMKTGMYYLRTRAAADAIK 768 (810)
Q Consensus 734 -~~~~~l~~~~~~Awk~GlKt~~yY~r~~~~~~~~~ 768 (810)
++.++|.++|++||++||||+|||.-..+..+...
T Consensus 691 ~~t~~dv~~~y~~Aw~~GlKgitvYR~~s~~~qvl~ 726 (771)
T PRK06406 691 DATPEDIAKAYRLAKDLHCKGITVYRDKSKTVQVLY 726 (771)
T ss_pred CCCHHHHHHHHHHHHHhCCCEEEEEcCCCcccceee
Confidence 78999999999999999999999954444444433
No 16
>PRK08188 ribonucleotide-diphosphate reductase subunit alpha; Validated
Probab=100.00 E-value=1.6e-152 Score=1336.28 Aligned_cols=589 Identities=28% Similarity=0.465 Sum_probs=544.1
Q ss_pred ccCcchHHHH-HHHhcHHHHHhhhcccccCCCChhhHHHHHHhhcccc-CCc-ccCCHHHHHHHHHhhhccCChHHHHHH
Q 003575 113 ASLVADDVYE-IIMKNAACLDGAIIYDRDFDFDYFGFKTLERSYLLKM-DSR-VVERPQHMLMRVSVGIHKDDTDSALKT 189 (810)
Q Consensus 113 ~~l~~~~~~~-~~~~~~~~l~~~i~~~rd~~~~y~g~~~l~~~Yllk~-~g~-~~E~pq~~~~RVA~~l~~~~~~~~~~~ 189 (810)
.+++++++++ |..+++++|.+.|+.+||..|+|+|+.+|+++|++|. +|+ .+|+||+++|+||++++..+.+++++|
T Consensus 69 ~~~y~~~~~~~y~~~~i~~l~~~i~~~~~~~~~y~ga~~~~~~Y~lk~~~~~~~~E~~~~r~~~vA~~la~~~~~~a~~~ 148 (714)
T PRK08188 69 EGYYEEEVLDQYSRNFVKTLFDHAYAKKFRFQTFLGAFKYYTSYTLKTFDGKRYLERFEDRVCMVALTLAQGDETLARQL 148 (714)
T ss_pred ccchhHHHHHhcCHHHHHHHHHHhhhccccccCcHhHHHHHHhhceecCCCCEEecCHHHHHHHHHHHHhcCCHHHHHHH
Confidence 3467888875 7888999999999999999999999999999999994 665 479999999999999999888899999
Q ss_pred HHHHhcCceecCCccccccCCC-CCCCcccccccccCCChHHHHHHHHHHHHHHHhcCCcceeeeeecCCCCcccCCCCC
Q 003575 190 YHLMSQHWFTHATPTLFNAGTP-QPQLSSCFLLCMKDDSIEGIYDTLKKCAIISKSAGGIGLSIHNIRASGSYIHGTNGS 268 (810)
Q Consensus 190 y~~ls~~~~~~atP~l~naGt~-~~~lsSCfl~~~~~DS~~~I~~~~~~~a~isk~ggGiG~~~s~iR~~Gs~I~g~~g~ 268 (810)
|++|++++|+||||||+|+|++ ++||+||||+.+ +||++||+++++++++++|.|||||+|+|+|||+|++|+|++|.
T Consensus 149 y~~l~~~~f~paTPtl~NaG~~~~g~lsSCFl~~v-~DslesI~~~~~~~~~lsK~GGGVG~~ls~lR~~Gs~Ikg~~g~ 227 (714)
T PRK08188 149 VDEIISGRFQPATPTFLNCGKKQRGELVSCFLLRI-EDNMESIGRSINSALQLSKRGGGVALLLSNLREAGAPIKRIENQ 227 (714)
T ss_pred HHHHHcCCEecCCcceecCCCCCCCcceeEEecCC-CCCHHHHHHHHHHHHHHHhhCCeEEEeccccCCCCCcccCCCCC
Confidence 9999999999999999999998 899999999997 89999999999999999999999999999999999999999999
Q ss_pred CCCcccHHHHHHHHHHHHhhCCCcccCceEEeecCCcccHHHHHHhhhhcCcccccccccceecccCHHHHHHHhcCCce
Q 003575 269 SNGIVPMLQVFNDTARYVDQGGGKRKGAFAIYLEPWHADIFEFLDLRKNQGKEECRARDLFYALWVPDLFMERVRDDGKW 348 (810)
Q Consensus 269 ssG~vp~lk~~~~~~~~v~qgG~~Rrga~~~yl~~wH~DI~~Fl~~K~~~g~e~~r~~~l~~sv~ipD~Fm~rv~~~~~w 348 (810)
|||||||||+||+++.+++||| +|+||.|+||++|||||++||++|+++|++..|++++++||||||+||++|++|++|
T Consensus 228 ssGvvp~mkl~d~~~~~v~Q~G-~R~GA~avyL~~~HpDI~~FL~~K~~~gde~~R~~~l~~gV~ipD~Fme~v~~~~~~ 306 (714)
T PRK08188 228 SSGVIPVMKLLEDAFSYANQLG-ARQGAGAVYLHAHHPDILRFLDTKRENADEKIRIKTLSLGVVIPDITFELAKENEDM 306 (714)
T ss_pred CCCHHHHHHHHHHHHHHHHhcC-CCCCceeEEecCCCchHHHHHHHhhcccchhhhhhhchHHhccCHHHHHHHHcCCCe
Confidence 9999999999999999999999 899999999999999999999999999999999999999999999999999999999
Q ss_pred EEecCCCCCCchhhhhhhHH-----HHHHHHHHcC-ceeEEEeHHHHHHHHHHHHHhhCCceeEechhhhhhCCCCCCCe
Q 003575 349 SLFCPSDASGLADSWGIEFE-----HLYSQYEEEG-RAKMVISARKLWFEILNSQIETGTPYMLFKDSCNRKSNQQNLGT 422 (810)
Q Consensus 349 ~Lf~P~~~~~L~~~~g~eF~-----~~Y~~~e~~~-~~~~~v~Ar~l~~~I~~~~~etG~P~i~f~D~~Nr~~~~~~~g~ 422 (810)
+||+|+++ .++||++|+ +.|.++++++ ..+++|+||+||++|+++||+||+|||+|+|++||+||++ |+
T Consensus 307 ~Lf~P~~~---~~~yG~~f~~~~~~~~Y~~~v~~~~i~k~~I~Arel~~~I~~~~~etG~Pyi~f~D~vNr~np~~--G~ 381 (714)
T PRK08188 307 YLFSPYDV---ERVYGKPFADISVTEKYDEMVADERIRKKKINAREFFQTLAEIQFESGYPYIMFEDTVNRANPIA--GR 381 (714)
T ss_pred EeeCcchh---hhhhcccccchhHHHHHHHHHhCCcceeeEeeHHHHHHHHHHHHHHhCCCeEEeHHHHHhhCCCC--Cc
Confidence 99999875 578998885 6688888764 4578999999999999999999999999999999999986 99
Q ss_pred EEeecCCccccccCCCC------------CceeeeccccCchhhhhccCCccccccccccccCCCCCccCCHHHHHHHHH
Q 003575 423 IKSSNLCTEIVEFSSPE------------ETAVCNLASIALPRYVREKGVPVQSNVSKLVGSRDSKNRLFDFERLAEVTK 490 (810)
Q Consensus 423 I~~sNlC~EI~~~~~~~------------e~~~CNL~SInL~~~v~~~~~~~~~~~~~~~g~~~~~~~~fD~~~l~~~v~ 490 (810)
|.+||||+||+|+++|. +.++|||+||||++|+ |++.|+++|+
T Consensus 382 I~~SNlC~EI~q~~~p~~~~~~~~~~~~g~~~sCNLgSiNL~~~~-------------------------d~~~l~~~v~ 436 (714)
T PRK08188 382 INMSNLCSEILQVNSASEYNEDLSYAHIGKDISCNLGSLNIAHTM-------------------------DSPDFGRTVE 436 (714)
T ss_pred eeeecccccccccCChhhhccccccccCCCcceEEChhhhHHHhc-------------------------CHHHHHHHHH
Confidence 99999999999998774 3479999999999986 4688999999
Q ss_pred HHHHHHHHHHhcCC-CChHHHHHHhhccCCceeecchHHHHHHHcCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHc
Q 003575 491 IITENLNKIIDVNH-YPIETTRRSNLRHRPIGIGIQGLADTFILLGLPFESPEAQQLNKDIFETIYYHALKASAELAVKD 569 (810)
Q Consensus 491 ~avr~LD~vId~~~-~p~~~~~~~~~~~R~iGlGv~Glad~L~~~gi~y~S~ea~~l~~~i~e~i~~~a~~aS~eLAke~ 569 (810)
++||+||+|||++. +|+|+++++|+++|+||||+||||++|+++||+|+|+||++|+++|||.|+|+|++||++||+|+
T Consensus 437 ~avR~LD~ViD~~~~~p~p~~~~~n~~~R~IGLGvmGl~~~La~~gi~Y~S~ea~~~~~~ife~i~y~A~~aS~eLAkEr 516 (714)
T PRK08188 437 TAIRALTAVSDMSHIRSVPSIEKGNAASHAIGLGQMNLHGYLAREGIFYGSEEALDFTNIYFYTVTYHALRASNLLARER 516 (714)
T ss_pred HHHHHHHHHHHhhcCCCCchHHHHHHhcCChhccHhHHHHHHHHcCCCcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 99999999999997 69999999999999999999999999999999999999999999999999999999999999999
Q ss_pred C-CCCCCCCCccccCcccccc-----ccC--------------CCCCcccHHHHHHHHHhcCccccceeccCCCcchhhh
Q 003575 570 G-PYETYFGSPMSKGILQVDM-----WNI--------------TPSDRWDWSSLREMISKNGVRNSLLVAPMPTASTSQI 629 (810)
Q Consensus 570 G-~~~~f~~S~~~~G~l~~d~-----~~~--------------~~~~~~dW~~Lr~~i~~~G~RNs~l~AiaPT~stS~i 629 (810)
| +||.|++|+|++|.+ |+. |.. ..+...+|++|+++|++||+|||+++|||||||||+|
T Consensus 517 G~~f~~f~~S~~~~G~~-f~~y~~~~~~~~~~~v~~~~~~~~~~~p~~~~W~~L~~~i~~~GlRNs~l~AiAPTgSiS~i 595 (714)
T PRK08188 517 GETFAGFEQSKYASGEY-FDKYTQQDWQPKTAKVRELFARAGITIPTQEDWAQLRDDVMRHGIYNQNLQAVPPTGSISYI 595 (714)
T ss_pred CCCCCCcccChhhccch-hhhcchhccCcchhhhhhhhhhcccCCCcHHhHHHHHHHHHHhCcccceeeeeCCcchHHHH
Confidence 9 599999999999998 333 321 1123568999999999999999999999999999999
Q ss_pred cCCCccccccccceeeEEcc-cCceEEeCHHHHHHHHHcCCChHHHHHHHHhcCCccccccCCchHHHhhccccccCChH
Q 003575 630 LGNNECFEPYTSNIYTRRVL-SGEFIVVNKHLLKDLTELGLWSHALKTKIIYENGSVSKISEIPEELKAIYKTVWEIKQK 708 (810)
Q Consensus 630 ~g~s~gieP~~s~~y~r~~~-~g~~~~vn~~l~~~l~~~g~~~~~~~~~i~~~~Gsv~~~~~lp~~~k~~y~tA~ei~~~ 708 (810)
+|+|+||||+|+++|.|+.. .|++..++| .++++.+++|+|||||+|+
T Consensus 596 ~~~T~sIePi~s~v~~R~~~~~g~~~~~~p-------------------------------~l~~~~~~~y~tA~ei~~~ 644 (714)
T PRK08188 596 NHSTSSIHPIVSKIEIRKEGKIGRVYYPAP-------------------------------YMTNDNLEYYQDAYEIGPE 644 (714)
T ss_pred cCCCCCcCcchhhheeeeccccceEEeeCc-------------------------------ccchhhHhHhCcHHhCCHH
Confidence 99999999999999999853 366655544 4455667899999999999
Q ss_pred HHHHHHHHhCcccccccceeEeeCC-CChHHHHHHHHHHHHcCCceEEEEecCcccccc
Q 003575 709 TLVDMAADRGCYIDQSQSLNIHMEQ-PDHGKLTSLHFYAWSKGMKTGMYYLRTRAAADA 766 (810)
Q Consensus 709 ~~i~~~a~~Q~~vDqs~S~nl~~~~-~~~~~l~~~~~~Awk~GlKt~~yY~r~~~~~~~ 766 (810)
++|+|+|++|||||||||+|||+++ .+.++|.++|++|||+|||| +||+|+++.+..
T Consensus 645 ~~I~~~A~~Qk~VDQsiS~tl~~~~~~t~~dl~~~y~~Awk~GlKt-iYY~R~~~~~~~ 702 (714)
T PRK08188 645 KIIDTYAAATQHVDQGLSLTLFFPDTATTRDINKAQIYAWRKGIKT-LYYIRLRQMALE 702 (714)
T ss_pred HHHHHHHHHcccchhhhcCceecCCCCCHHHHHHHHHHHHHcCCCe-EEEEeecccccc
Confidence 9999999999999999999999996 58999999999999999999 799999766543
No 17
>PRK07306 ribonucleotide-diphosphate reductase subunit alpha; Validated
Probab=100.00 E-value=2e-151 Score=1332.18 Aligned_cols=586 Identities=26% Similarity=0.459 Sum_probs=540.2
Q ss_pred ccCcchHHHH-HHHhcHHHHHhhhcccccCCC-ChhhHHHHHHhhccc-cCCcc-cCCHHHHHHHHHhhhccCChHHHHH
Q 003575 113 ASLVADDVYE-IIMKNAACLDGAIIYDRDFDF-DYFGFKTLERSYLLK-MDSRV-VERPQHMLMRVSVGIHKDDTDSALK 188 (810)
Q Consensus 113 ~~l~~~~~~~-~~~~~~~~l~~~i~~~rd~~~-~y~g~~~l~~~Yllk-~~g~~-~E~pq~~~~RVA~~l~~~~~~~~~~ 188 (810)
.++|++++++ |+.+++++|.++|++ +|+.| +|+|+.+|+++|++| .+|+. +|+||+++|++|++++..+.+++++
T Consensus 63 ~~~y~~~~~~~y~~~~i~~l~~~i~~-~~~~f~~~~ga~~~~~rY~lk~~~g~~~~E~~~~Rv~~~A~~la~~~~~~a~~ 141 (720)
T PRK07306 63 NDYIESAFIKKYRPEFIEKLYQFLKA-QNFRFKSFMAAYKFYNQYALKTNDGEYYLENFEDRVLFNALYFADGDEDLAKD 141 (720)
T ss_pred cChhHHHHHhhCCHHHHHHHHHHHhh-ccCcCcCHHHHHHHHHHhCccCCCCCEeccCHHHHHHHHHHHHccCCHHHHHH
Confidence 3578888876 788999999999997 89998 999999999999999 45665 7999999999999999888899999
Q ss_pred HHHHHhcCceecCCccccccCCC-CCCCcccccccccCCChHHHHHHHHHHHHHHHhcCCcceeeeeecCCCCcccCCCC
Q 003575 189 TYHLMSQHWFTHATPTLFNAGTP-QPQLSSCFLLCMKDDSIEGIYDTLKKCAIISKSAGGIGLSIHNIRASGSYIHGTNG 267 (810)
Q Consensus 189 ~y~~ls~~~~~~atP~l~naGt~-~~~lsSCfl~~~~~DS~~~I~~~~~~~a~isk~ggGiG~~~s~iR~~Gs~I~g~~g 267 (810)
||++|++++|+||||||+|||++ ++|||||||+++ +||++||+++++++++++|.|||||+|||+|||+|++|+|++|
T Consensus 142 ~y~~ls~~~f~paTPtl~NaG~~~~~~lsSCFl~~v-~Dsl~sI~~~~~~~a~lsk~GGGvG~~~s~lR~~Gs~I~g~~g 220 (720)
T PRK07306 142 LADEMIHQRYQPATPSFLNAGRARRGELVSCFLIQV-TDDMNSIGRSINSALQLSRIGGGVGINLSNLREAGAPIKGYEG 220 (720)
T ss_pred HHHHHHhCCeecCCCCeecCCCCCCCCeeeEEeCCC-CCChHHHHHHHHHHHHHHhcCCeeEecccccCCCCCcccCCCC
Confidence 99999999999999999999997 589999999997 8999999999999999999999999999999999999999999
Q ss_pred CCCCcccHHHHHHHHHHHHhhCCCcccCceEEeecCCcccHHHHHHhhhhcCcccccccccceecccCHHHHHHHhcCCc
Q 003575 268 SSNGIVPMLQVFNDTARYVDQGGGKRKGAFAIYLEPWHADIFEFLDLRKNQGKEECRARDLFYALWVPDLFMERVRDDGK 347 (810)
Q Consensus 268 ~ssG~vp~lk~~~~~~~~v~qgG~~Rrga~~~yl~~wH~DI~~Fl~~K~~~g~e~~r~~~l~~sv~ipD~Fm~rv~~~~~ 347 (810)
.|+|||||||+||+++.+++||| +||||+|+||++|||||++||++|+++|++..|++++|+||||||+|||+|++|++
T Consensus 221 ~ssGvvp~mk~~d~~~~~v~QgG-~RrGA~~vyL~~wHpDI~~FL~~K~~~gde~~R~~nl~~~v~vpD~Fm~~v~~~~~ 299 (720)
T PRK07306 221 AASGVVPVMKLFEDSFSYSNQLG-QRQGAGVVYLNVFHPDIIAFLSTKKENADEKVRVKTLSLGVTVPDKFYELARKNED 299 (720)
T ss_pred CCCCHHHHHHHHHHHHHHHhcCC-CcCcceEEEEeCCCccHHHHHHHhcccccchhhhcccchhhccCHHHHHHHHcCCC
Confidence 99999999999999999999998 89999999999999999999999999999999999999999999999999999999
Q ss_pred eEEecCCCCCCchhhhhhhH-----HHHHHHHHHcCc-eeEEEeHHHHHHHHHHHHHhhCCceeEechhhhhhCCCCCCC
Q 003575 348 WSLFCPSDASGLADSWGIEF-----EHLYSQYEEEGR-AKMVISARKLWFEILNSQIETGTPYMLFKDSCNRKSNQQNLG 421 (810)
Q Consensus 348 w~Lf~P~~~~~L~~~~g~eF-----~~~Y~~~e~~~~-~~~~v~Ar~l~~~I~~~~~etG~P~i~f~D~~Nr~~~~~~~g 421 (810)
|+||+|+++ .++||++| ++.|+++++++. .+++|+||+||++|++++|+||+|||+|+|++|++||+ .|
T Consensus 300 w~Lf~P~~~---~~~yG~~f~~~~~~~~Y~~~~~~~~i~~~~i~AreL~~~I~~~~~etG~Pyi~f~D~iNr~np~--~g 374 (720)
T PRK07306 300 MYLFSPYSV---EKEYGVPFNYVDITKEYDELVANPNIRKTKIKARDLETEISKLQQESGYPYIINIDTANRANPI--DG 374 (720)
T ss_pred eEEeCcchh---hhhcCccccchhHHHHHHHHhhcccceeeEeeHHHHHHHHHHHHHHhCCCeEEeHHHHHhhCCC--CC
Confidence 999999875 57899988 577998887654 57899999999999999999999999999999999998 49
Q ss_pred eEEeecCCccccccCCCC------------CceeeeccccCchhhhhccCCccccccccccccCCCCCccCCHHHHHHHH
Q 003575 422 TIKSSNLCTEIVEFSSPE------------ETAVCNLASIALPRYVREKGVPVQSNVSKLVGSRDSKNRLFDFERLAEVT 489 (810)
Q Consensus 422 ~I~~sNlC~EI~~~~~~~------------e~~~CNL~SInL~~~v~~~~~~~~~~~~~~~g~~~~~~~~fD~~~l~~~v 489 (810)
+|.+||||+||+|+++|. +.++|||+||||++|++. ..|+++|
T Consensus 375 ~I~~SNlC~EI~q~~~p~~~~~~~~~~~~g~~~~CNLgSINL~~~v~~-------------------------~~~~~~v 429 (720)
T PRK07306 375 KIIMSNLCSEILQVQTPSLINDAQEYVKMGTDISCNLGSTNIVNMMTS-------------------------PDFGRSI 429 (720)
T ss_pred ceeecccccccccCCCchhhccccccccCCCccEEECHHHHHHHHhcc-------------------------ccHHHHH
Confidence 999999999999998874 347999999999999864 2577999
Q ss_pred HHHHHHHHHHHhcCC-CChHHHHHHhhccCCceeecchHHHHHHHcCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 003575 490 KIITENLNKIIDVNH-YPIETTRRSNLRHRPIGIGIQGLADTFILLGLPFESPEAQQLNKDIFETIYYHALKASAELAVK 568 (810)
Q Consensus 490 ~~avr~LD~vId~~~-~p~~~~~~~~~~~R~iGlGv~Glad~L~~~gi~y~S~ea~~l~~~i~e~i~~~a~~aS~eLAke 568 (810)
+++||+||+|||++. ||+|+++++|+++|+||||+|||||+|+++||+|+|+||++|+++|||.|+|+|++||++||+|
T Consensus 430 ~~avR~LDnViD~~~~~p~p~~~~~n~~~R~IGLGvmGla~~La~~gi~Y~S~eA~~~~~~i~e~i~y~A~~aS~eLA~E 509 (720)
T PRK07306 430 ETMVRALTFVTDSSNIDAVPSIKHGNSQAHTIGLGAMGLHSYLAQNHIEYGSPESLEFTSIYFMLLNYWTLVASNNIARE 509 (720)
T ss_pred HHHHHHHHHHHHhhCCCCChHHHHHHHhcCchhhhHHHHHHHHHHcCCCcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 999999999999986 7999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cC-CCCCCCCCccccCccccccccCC---C--------------CCcccHHHHHHHHHhcCccccceeccCCCcchhhhc
Q 003575 569 DG-PYETYFGSPMSKGILQVDMWNIT---P--------------SDRWDWSSLREMISKNGVRNSLLVAPMPTASTSQIL 630 (810)
Q Consensus 569 ~G-~~~~f~~S~~~~G~l~~d~~~~~---~--------------~~~~dW~~Lr~~i~~~G~RNs~l~AiaPT~stS~i~ 630 (810)
+| +||.|++|+|++|.+ |+.|... | +...+|++||++|++||+|||+++|||||||||+|+
T Consensus 510 rG~~fp~f~~S~~~~G~~-f~~~~~~~~~~~~~~v~~~~~~~~~p~~~~W~~Lr~~i~~~GlRNs~l~AiAPTgSiS~i~ 588 (720)
T PRK07306 510 RGETFHNFEKSKYADGSY-FDKYVTGDFVPKSDKVKELFKGIFIPTAADWAALRDAVMKDGLYHQNRLAVAPNGSISYIN 588 (720)
T ss_pred hCCCCCCcCcChhhccch-hhhhhhcccCcchhhHHHhhhccCCCchhhHHHHHHHHHHhCcccccceeeCCccHHHHHh
Confidence 99 699999999999998 6766321 1 234689999999999999999999999999999999
Q ss_pred CCCccccccccceeeEEcc-cCceEEeCHHHHHHHHHcCCChHHHHHHHHhcCCccccccCCchHHHhhccccccCChHH
Q 003575 631 GNNECFEPYTSNIYTRRVL-SGEFIVVNKHLLKDLTELGLWSHALKTKIIYENGSVSKISEIPEELKAIYKTVWEIKQKT 709 (810)
Q Consensus 631 g~s~gieP~~s~~y~r~~~-~g~~~~vn~~l~~~l~~~g~~~~~~~~~i~~~~Gsv~~~~~lp~~~k~~y~tA~ei~~~~ 709 (810)
|+|+||||+|+++|.|+.. .|++. ...|.+|++.+++|+|||||+|++
T Consensus 589 g~S~gIePi~s~v~~r~~~~~g~~~-------------------------------~~~p~l~~~~~~~f~tA~ei~~~~ 637 (720)
T PRK07306 589 DTSASIHPITQRIEERQEKKIGKIY-------------------------------YPAPGLSTETIPYYTSAYDMDMRK 637 (720)
T ss_pred CCCCccccchhhHhhhhhhcCCcee-------------------------------ccCCCCchhHHHHhCcHHhCCHHH
Confidence 9999999999999987532 13221 134778888999999999999999
Q ss_pred HHHHHHHhCcccccccceeEeeCCC---------------ChHHHHHHHHHHHHcCCceEEEEecCcccc
Q 003575 710 LVDMAADRGCYIDQSQSLNIHMEQP---------------DHGKLTSLHFYAWSKGMKTGMYYLRTRAAA 764 (810)
Q Consensus 710 ~i~~~a~~Q~~vDqs~S~nl~~~~~---------------~~~~l~~~~~~Awk~GlKt~~yY~r~~~~~ 764 (810)
+|+|+|++|||||||||+|||++++ +.++|.++|++|||+|||| +||+|+....
T Consensus 638 ~I~~~A~~Qk~VDQsiS~tl~~~~~~~~~~~~~~~~~~~~t~~~l~~~~~~Awk~GlKt-~YY~Rt~~~~ 706 (720)
T PRK07306 638 VIDVYAAATEHVDQGLSLTLFMRSTLPKGLYEWKDRTNKMTTRDLSILRNYAFNKGIKS-IYYIRTFTDD 706 (720)
T ss_pred HHHHHHHHhccchhhhcCccccCCccccccccccccccCCCHHHHHHHHHHHHHcCCCe-EEEEeecccc
Confidence 9999999999999999999999853 6799999999999999999 7999986654
No 18
>PRK09102 ribonucleotide-diphosphate reductase subunit alpha; Validated
Probab=100.00 E-value=1.2e-145 Score=1265.12 Aligned_cols=552 Identities=38% Similarity=0.594 Sum_probs=525.4
Q ss_pred HHhhhcccccCCCChhhHHHHHHhhccccCCcccCCHHHHHHHHHhhhccCChHHHHHHHHHHhcCceecCCccccccCC
Q 003575 131 LDGAIIYDRDFDFDYFGFKTLERSYLLKMDSRVVERPQHMLMRVSVGIHKDDTDSALKTYHLMSQHWFTHATPTLFNAGT 210 (810)
Q Consensus 131 l~~~i~~~rd~~~~y~g~~~l~~~Yllk~~g~~~E~pq~~~~RVA~~l~~~~~~~~~~~y~~ls~~~~~~atP~l~naGt 210 (810)
.+..||++||+.|+|+|+++|.+||++| + |+||++|||||++++..+.+++++||++|++++|+||||||+|+|+
T Consensus 9 ~~~~i~~~rd~~~~~~~~~~l~~rYl~~--~---Es~~~~~~RvA~~la~~~~~~~~~fy~~Ls~~~~~patP~l~naG~ 83 (601)
T PRK09102 9 FQINIDRSRDAWLTEFGKATLRDRYLLE--G---ESYQDLFARIAEAYADIDPEHAQRFYDYMSRGWFMPATPVLSNGGT 83 (601)
T ss_pred ccceecchhhcccCHHHHHHHHHhhCCC--C---CCHHHHHHHHHHHHhcCCHHHHHHHHHHHHcCCEEcCCHHHhcCCC
Confidence 4568999999999999999999999998 2 8999999999999997677899999999999999999999999999
Q ss_pred CCCCCcccccccccCCChHHHHHHHHHHHHHHHhcCCcceeeeeecCCCCcccCCCCCCCCcccHHHHHHHHHHHHhhCC
Q 003575 211 PQPQLSSCFLLCMKDDSIEGIYDTLKKCAIISKSAGGIGLSIHNIRASGSYIHGTNGSSNGIVPMLQVFNDTARYVDQGG 290 (810)
Q Consensus 211 ~~~~lsSCfl~~~~~DS~~~I~~~~~~~a~isk~ggGiG~~~s~iR~~Gs~I~g~~g~ssG~vp~lk~~~~~~~~v~qgG 290 (810)
+++|++||||+.+ +||+++|+++++++++++|+|||||+|+|+|||+|++|+|. |.|+||||||++||+++.+|+|||
T Consensus 84 ~~~~lssCfl~~v-~Dsle~I~~~~~~~a~l~k~gGGvG~~~s~iR~~Gs~I~~~-g~ssG~v~f~k~~d~~~~~i~qgg 161 (601)
T PRK09102 84 DRGLPISCFLNYV-EDSLEGIVNTWNENVWLAKRGGGIGSYWGNVRSIGEPIRNN-GKSSGIIPFIKVMDSLTLAISQGS 161 (601)
T ss_pred CCCCeeeEEeCCC-CCCHHHHHHHHHHHHHHHhhCCeeeecccccCCCCCccCCC-CCCCCHHHHHHHHHHHHHHHHcCC
Confidence 9999999999987 89999999999999999999999999999999999999986 899999999999999999999998
Q ss_pred CcccCceEEeecCCcccHHHHHHhhhhcCcccccccccceecccCHHHHHHHhcCCceEEecCCCCCCchhhhhhhHHHH
Q 003575 291 GKRKGAFAIYLEPWHADIFEFLDLRKNQGKEECRARDLFYALWVPDLFMERVRDDGKWSLFCPSDASGLADSWGIEFEHL 370 (810)
Q Consensus 291 ~~Rrga~~~yl~~wH~DI~~Fl~~K~~~g~e~~r~~~l~~sv~ipD~Fm~rv~~~~~w~Lf~P~~~~~L~~~~g~eF~~~ 370 (810)
+||||+|+||++|||||++||++|++.|++..|++++|+||||||+||++|++|++|+||+|++
T Consensus 162 -~RrGA~~~~L~~~HpDI~~Fi~~K~~~g~~~~r~~n~n~sv~i~D~FM~~v~~d~~w~L~~p~~--------------- 225 (601)
T PRK09102 162 -LRRGSFAVYLDIEHPEIEEFLDIRKPTGDPNRKALNLHHGVCVTDEFMEAVEDGDEWDLISPKD--------------- 225 (601)
T ss_pred -ccccceEEEEeCCCcCHHHHHHHhhccCcccccccCCeeEEEECHHHHHHHHcCCCeEEEcCCC---------------
Confidence 8999999999999999999999999999999999999999999999999999999999999975
Q ss_pred HHHHHHcCceeEEEeHHHHHHHHHHHHHhhCCceeEechhhhhhCCCCC--CC-eEEeecCCccccccC-----CCCCce
Q 003575 371 YSQYEEEGRAKMVISARKLWFEILNSQIETGTPYMLFKDSCNRKSNQQN--LG-TIKSSNLCTEIVEFS-----SPEETA 442 (810)
Q Consensus 371 Y~~~e~~~~~~~~v~Ar~l~~~I~~~~~etG~P~i~f~D~~Nr~~~~~~--~g-~I~~sNlC~EI~~~~-----~~~e~~ 442 (810)
+..+++|+||+||++|++++|+||+|||+|+|++|+++|+++ .| +|++||||+||+|++ ..++++
T Consensus 226 -------~~~~~~i~Arel~~~I~~~~~~tG~Pgi~f~D~~N~~~p~~~~~~G~~I~~sNpC~Ei~l~~~~~~~~~~~~~ 298 (601)
T PRK09102 226 -------KSVIRTVKARDLWAKILETRIETGEPYLLFIDNVNRALPEVYKDLGLKVKASNLCSEITLPTGIDHLGEDRTA 298 (601)
T ss_pred -------CeEEEEecHHHHHHHHHHHHHHhCCCeEEEHHHhhhhCcccccccCCeEEeeCcccceecccccccCCCCcee
Confidence 345789999999999999999999999999999999998754 35 899999999999998 667899
Q ss_pred eeeccccCchhhhhccCCccccccccccccCCCCCccCCHHHHHHHHHHHHHHHHHHHh--cCCCC--hHHHHHHhhccC
Q 003575 443 VCNLASIALPRYVREKGVPVQSNVSKLVGSRDSKNRLFDFERLAEVTKIITENLNKIID--VNHYP--IETTRRSNLRHR 518 (810)
Q Consensus 443 ~CNL~SInL~~~v~~~~~~~~~~~~~~~g~~~~~~~~fD~~~l~~~v~~avr~LD~vId--~~~~p--~~~~~~~~~~~R 518 (810)
+|||+||||++||+ |+.|+++++++||+||+||| ++.+| ++++++.++++|
T Consensus 299 ~CnL~SINL~~~v~-------------------------~~~~~~~v~~~vr~LDnvid~~i~~~p~~~~~~~~~~~~~R 353 (601)
T PRK09102 299 VCCLSSLNLEYYDE-------------------------WKDTDAFIEDLMRFLDNVLQDFIDKAPDEMERAKYSAMRER 353 (601)
T ss_pred eeeecceeHHHhcc-------------------------hhhHHHHHHHHHHHHHHHHHHHHhhCcchHHHHHHHHHhcC
Confidence 99999999999973 57889999999999999998 55555 999999999999
Q ss_pred CceeecchHHHHHHHcCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCCCCCCccccCccccccccCCCCCcc
Q 003575 519 PIGIGIQGLADTFILLGLPFESPEAQQLNKDIFETIYYHALKASAELAVKDGPYETYFGSPMSKGILQVDMWNITPSDRW 598 (810)
Q Consensus 519 ~iGlGv~Glad~L~~~gi~y~S~ea~~l~~~i~e~i~~~a~~aS~eLAke~G~~~~f~~S~~~~G~l~~d~~~~~~~~~~ 598 (810)
+||||+|||||+|+++|++|+|+||++|+++|||.|+++|+++|++||+|+|+||.|
T Consensus 354 ~IGLGvmGlad~L~~lgi~Y~S~ea~~~~~~i~e~i~~~A~~aS~eLA~ErG~~p~~----------------------- 410 (601)
T PRK09102 354 SVGLGVMGFHSYLQSKMIPFESVMAKQWNKKIFKHIREQADKASKELAKEKGECPDA----------------------- 410 (601)
T ss_pred ccccchhHHHHHHHHcCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCcch-----------------------
Confidence 999999999999999999999999999999999999999999999999999999843
Q ss_pred cHHHHHHHHHhcC--ccccceeccCCCcchhhhc-CCCccccccccceeeEEcccCceEEeCHHHHHHHHHcCCChHHHH
Q 003575 599 DWSSLREMISKNG--VRNSLLVAPMPTASTSQIL-GNNECFEPYTSNIYTRRVLSGEFIVVNKHLLKDLTELGLWSHALK 675 (810)
Q Consensus 599 dW~~Lr~~i~~~G--~RNs~l~AiaPT~stS~i~-g~s~gieP~~s~~y~r~~~~g~~~~vn~~l~~~l~~~g~~~~~~~ 675 (810)
.++| +|||+++|||||||||+|+ |+|+||||+|+++|+|++.+|+|.++|++|.++|++.|+|+++++
T Consensus 411 ---------~~~G~~~RNs~l~aiAPTgS~S~i~~g~S~gIEP~fs~~y~R~~~~g~~~~~n~~l~~~l~~~g~~~~~~~ 481 (601)
T PRK09102 411 ---------AGYGVMRRFSTKMAIAPTASISIILGNTSPGIEPIAANYYTHKTLKGSFTVKNKYLEKLLEEKGKDTDEVW 481 (601)
T ss_pred ---------hhhCchhcccceeeeCCCcHHHHHcCCCCCCcccchhhheeEeecCceEEEECHHHHHHHHHcCCChHHHH
Confidence 3589 9999999999999999999 899999999999999999999999999999999999999999999
Q ss_pred HHHHhcCCccccccCCchHHHhhccccccCChHHHHHHHHHhCcccccccceeEeeCC-CChHHHHHHHHHHHHcCCceE
Q 003575 676 TKIIYENGSVSKISEIPEELKAIYKTVWEIKQKTLVDMAADRGCYIDQSQSLNIHMEQ-PDHGKLTSLHFYAWSKGMKTG 754 (810)
Q Consensus 676 ~~i~~~~Gsv~~~~~lp~~~k~~y~tA~ei~~~~~i~~~a~~Q~~vDqs~S~nl~~~~-~~~~~l~~~~~~Awk~GlKt~ 754 (810)
++++.+.|++|++|.+|++++.+|+|||||+|++||+|||++|||||||||+|||+++ .+.++|.++|++|||+||||
T Consensus 482 ~~~~~~~gsvq~~~~~~~~~~~~f~tA~ei~~~~~i~~~A~~Q~~VDqsiS~tln~~~~~t~~dv~~~y~~Awk~GlK~- 560 (601)
T PRK09102 482 SSILTNEGSVQHLDFLSEEEKDVFKTAFEIDQRWIIELAADRQKYIDQAQSLNLFLPANVPKRDLNKLHFEAWKKGVKS- 560 (601)
T ss_pred HHHHhcCCCcccCccCChhHHhhcCcHhhCCHHHHHHHHHHHcccccccccCceecCCCCCHHHHHHHHHHHHHhCCCE-
Confidence 9999999999999999999999999999999999999999999999999999999997 58999999999999999999
Q ss_pred EEEecCcccccccccc
Q 003575 755 MYYLRTRAAADAIKFT 770 (810)
Q Consensus 755 ~yY~r~~~~~~~~~~~ 770 (810)
+||+|+++...++++.
T Consensus 561 ~yy~R~~~~~~~~~~~ 576 (601)
T PRK09102 561 LYYQRSKSVQRADKVS 576 (601)
T ss_pred EEEEcCchhhhhHHhc
Confidence 8999999999998874
No 19
>PRK08665 ribonucleotide-diphosphate reductase subunit alpha; Validated
Probab=100.00 E-value=1.8e-142 Score=1266.97 Aligned_cols=553 Identities=32% Similarity=0.502 Sum_probs=521.1
Q ss_pred ccccCCCChhhHHHHHHhhccc-cCCcccCCHHHHHHHHHhhhccCC---------hHHHHHHHHHHhcCceecCCcccc
Q 003575 137 YDRDFDFDYFGFKTLERSYLLK-MDSRVVERPQHMLMRVSVGIHKDD---------TDSALKTYHLMSQHWFTHATPTLF 206 (810)
Q Consensus 137 ~~rd~~~~y~g~~~l~~~Yllk-~~g~~~E~pq~~~~RVA~~l~~~~---------~~~~~~~y~~ls~~~~~~atP~l~ 206 (810)
..+|..|+++|+++|.++|++| .+|+++|+||++|+|||++++..+ .+++++||++|++++|+|+||||+
T Consensus 6 ~~~~~~~~~~a~~vl~~rYl~k~~~g~~~Es~~~~~~RVA~~la~~e~~~~~~~~~~~~~~~fy~~m~~~~f~pasP~l~ 85 (752)
T PRK08665 6 DLPDMKLTDNALTVLEKRYLKKDEDGKPIETPEDMFRRVARTIAAAELIYDSKADVEALADRFYDLMTSLEFLPNSPTLM 85 (752)
T ss_pred ccccCCcCHHHHHHHHHhhCccCCCCCcccCHHHHHHHHHHHHHhhccccCChhhHHHHHHHHHHHHHcCCeecCChHHh
Confidence 4578899999999999999999 478888999999999999998632 246789999999999999999999
Q ss_pred ccCCCCCCCcccccccccCCChHHHHHHHHHHHHHHHhcCCcceeeeeecCCCCcccCCCCCCCCcccHHHHHHHHHHHH
Q 003575 207 NAGTPQPQLSSCFLLCMKDDSIEGIYDTLKKCAIISKSAGGIGLSIHNIRASGSYIHGTNGSSNGIVPMLQVFNDTARYV 286 (810)
Q Consensus 207 naGt~~~~lsSCfl~~~~~DS~~~I~~~~~~~a~isk~ggGiG~~~s~iR~~Gs~I~g~~g~ssG~vp~lk~~~~~~~~v 286 (810)
|+|++++|||||||+++ +||++|||++++++|+++|.|||||+|||+|||+|++|+|++|+||||||||++||+++.+|
T Consensus 86 naG~~~~qlssCFv~~v-~Dsl~~I~~~~~~~a~i~k~GGGvG~~~S~lRp~G~~v~~~~g~asGpvsfm~~~d~~~~~v 164 (752)
T PRK08665 86 NAGRELGQLSACFVLPV-GDSIEEIFDAVKHAALIHKSGGGTGFSFSRLRPKNDRVGSTGGVASGPVSFMRVFDAATEAI 164 (752)
T ss_pred cCCCCCCcccceeecCC-CCCHHHHHHHHHHHHHHHhcCCeEEEeccccCCCCCcccCCCCCCCCchhHHHHHHHHHHHH
Confidence 99999999999999987 89999999999999999999999999999999999999999999999999999999999999
Q ss_pred hhCCCcccCceEEeecCCcccHHHHHHhhhhcCcccccccccceecccCHHHHHHHhcCCceEEecCCCCCCchhhhhhh
Q 003575 287 DQGGGKRKGAFAIYLEPWHADIFEFLDLRKNQGKEECRARDLFYALWVPDLFMERVRDDGKWSLFCPSDASGLADSWGIE 366 (810)
Q Consensus 287 ~qgG~~Rrga~~~yl~~wH~DI~~Fl~~K~~~g~e~~r~~~l~~sv~ipD~Fm~rv~~~~~w~Lf~P~~~~~L~~~~g~e 366 (810)
+||| +||||+|+||++|||||++||++|++.| +++++|+||+|||+||++|++|++|+||+|++
T Consensus 165 ~qgG-~RRGA~m~~l~~~HpDI~~FI~~K~~~~----~~~~~n~sV~i~D~Fm~av~~d~~~~L~~p~~----------- 228 (752)
T PRK08665 165 KQGG-TRRGANMGILRVDHPDIMEFITCKEDNG----ELTNFNISVAITEAFMEAVEADEEYDLINPRT----------- 228 (752)
T ss_pred HhCC-cccceeEEEEcCCCccHHHHHHhcccCC----ccccceeeeccCHHHHHHHHcCCCeEEEcCCC-----------
Confidence 9999 8999999999999999999999998766 46899999999999999999999999999974
Q ss_pred HHHHHHHHHHcCceeEEEeHHHHHHHHHHHHHhhCCceeEechhhhhhCCCCCCCeEEeecCCccccccCCCCCceeeec
Q 003575 367 FEHLYSQYEEEGRAKMVISARKLWFEILNSQIETGTPYMLFKDSCNRKSNQQNLGTIKSSNLCTEIVEFSSPEETAVCNL 446 (810)
Q Consensus 367 F~~~Y~~~e~~~~~~~~v~Ar~l~~~I~~~~~etG~P~i~f~D~~Nr~~~~~~~g~I~~sNlC~EI~~~~~~~e~~~CNL 446 (810)
|..+++|+||+||++|++++|+||+|||+|+|++|+++|+++.|+|.+||||+||++++ +++|||
T Consensus 229 -----------g~~~~~i~Ar~l~~~I~~~a~~~GePgi~f~D~iN~~n~~~~~g~I~~tNpCgEq~L~p----~~~CnL 293 (752)
T PRK08665 229 -----------GEVVGRLNAREVFDLIVEMAWENGEPGIVFIDRINRDNPTPHLGEIESTNPCGEQPLLP----YESCNL 293 (752)
T ss_pred -----------ceeEEEEEHHHHHHHHHHHHHHhCCCeEEEHHHHhhcCCCCcCCcEEEeccccccccCC----CCceec
Confidence 45789999999999999999999999999999999999999999999999999998763 459999
Q ss_pred cccCchhhhhccCCccccccccccccCCCCCccCCHHHHHHHHHHHHHHHHHHHhcCCCChHHHHHHhhccCCceeecch
Q 003575 447 ASIALPRYVREKGVPVQSNVSKLVGSRDSKNRLFDFERLAEVTKIITENLNKIIDVNHYPIETTRRSNLRHRPIGIGIQG 526 (810)
Q Consensus 447 ~SInL~~~v~~~~~~~~~~~~~~~g~~~~~~~~fD~~~l~~~v~~avr~LD~vId~~~~p~~~~~~~~~~~R~iGlGv~G 526 (810)
+||||++||++ ..|||++|+++|+++|||||+|||++.||+|++++.++++|+||||+||
T Consensus 294 gSiNL~~~v~~--------------------~~~D~~~l~~~v~~avr~LDnvId~~~~Pl~~~~~~~~~~R~IGLGv~G 353 (752)
T PRK08665 294 GSINLSKMVKN--------------------GDVDWEKLREVVHLAVRFLDNVIDANKYPLPQIEEMTKGNRKIGLGVMG 353 (752)
T ss_pred cceeHHHHhcc--------------------CCCCHHHHHHHHHHHHHHHHHHHhcCCCCcHHHHHHHHhcCccccchhh
Confidence 99999999964 2699999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHcCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCCCCCCccccCccccccccCCCCCcccHHHHHHH
Q 003575 527 LADTFILLGLPFESPEAQQLNKDIFETIYYHALKASAELAVKDGPYETYFGSPMSKGILQVDMWNITPSDRWDWSSLREM 606 (810)
Q Consensus 527 lad~L~~~gi~y~S~ea~~l~~~i~e~i~~~a~~aS~eLAke~G~~~~f~~S~~~~G~l~~d~~~~~~~~~~dW~~Lr~~ 606 (810)
|||+|+++|++|+|+||++|+++||+.|+++|+++|++||+|+|+||.|++|+|.++.+
T Consensus 354 lad~L~~lgi~Y~S~ea~~l~~~i~~~i~~~a~~aS~eLA~e~G~fp~f~~s~~~~~~~--------------------- 412 (752)
T PRK08665 354 WADMLIQLGIPYDSEEAVELAEKVMKFIQDEAHAASRELAEERGPFPNYEGSIYDKDGL--------------------- 412 (752)
T ss_pred HHHHHHHcCCCcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCccccCcchhccc---------------------
Confidence 99999999999999999999999999999999999999999999999999999976532
Q ss_pred HHhcCccccceeccCCCcchhhhcCCCccccccccceeeEEcccCc-eEEeCHHHHHHHHHcCCChHHHHHHHHhcCCcc
Q 003575 607 ISKNGVRNSLLVAPMPTASTSQILGNNECFEPYTSNIYTRRVLSGE-FIVVNKHLLKDLTELGLWSHALKTKIIYENGSV 685 (810)
Q Consensus 607 i~~~G~RNs~l~AiaPT~stS~i~g~s~gieP~~s~~y~r~~~~g~-~~~vn~~l~~~l~~~g~~~~~~~~~i~~~~Gsv 685 (810)
.|+|||++||||||||||+|+|+|+||||+|+++|.|++..|+ +..+|++|.+.|+++|+|++++++++ ..+|++
T Consensus 413 ---~~~RNs~~taiAPTgTiS~i~g~SsGIEP~fa~~y~R~v~~g~~~~~vn~~~~~~l~~~g~~~~~~~~~~-~~~gs~ 488 (752)
T PRK08665 413 ---GPMRNATVTTIAPTGTISIIAGCSSGIEPLFALSFTRNVMDGERLVEVNPVFEAAAKEEGFYSEELMEKI-AEKGSI 488 (752)
T ss_pred ---ccccccceeeeCCccHHHhhcCCCCccCccccceeEEEecCCceeEEecHHHHHHHHHcCCCcHHHHHHH-HhcCCc
Confidence 3799999999999999999999999999999999999998887 68899999999999999999999887 578999
Q ss_pred ccccCCchHHHhhccccccCChHHHHHHHHHhCcccccccceeEeeCC-CChHHHHHHHHHHHHcCCceEEEEecCcccc
Q 003575 686 SKISEIPEELKAIYKTVWEIKQKTLVDMAADRGCYIDQSQSLNIHMEQ-PDHGKLTSLHFYAWSKGMKTGMYYLRTRAAA 764 (810)
Q Consensus 686 ~~~~~lp~~~k~~y~tA~ei~~~~~i~~~a~~Q~~vDqs~S~nl~~~~-~~~~~l~~~~~~Awk~GlKt~~yY~r~~~~~ 764 (810)
|++|.+|++++.+|+|||||+|++||+|||++|||||||||+|||+++ .+.++|.++|++||++||||+|||....+..
T Consensus 489 ~~~~~lp~~~~~~f~tA~di~~~~~i~m~A~~Q~~vD~siSkTvn~p~~~t~~dv~~~y~~Aw~~GlKg~t~YR~gs~~~ 568 (752)
T PRK08665 489 QDIDEVPEDVRRVFVTAHDISPEWHVRMQAAFQKHTDNAVSKTVNFPNEATIEDVREVYRLAYELGCKGVTIYRDGSRDE 568 (752)
T ss_pred ccCCCCChHHHHhcCcHhhCCHHHHHHHHHHHccccchhccCceecCCCCCHHHHHHHHHHHHHhCCCEEEEECCCCccc
Confidence 999999999999999999999999999999999999999999999996 6899999999999999999999996544444
Q ss_pred cc
Q 003575 765 DA 766 (810)
Q Consensus 765 ~~ 766 (810)
+.
T Consensus 569 ~v 570 (752)
T PRK08665 569 QV 570 (752)
T ss_pred ce
Confidence 43
No 20
>PRK08115 ribonucleotide-diphosphate reductase subunit alpha; Validated
Probab=100.00 E-value=1e-142 Score=1254.52 Aligned_cols=567 Identities=26% Similarity=0.392 Sum_probs=512.5
Q ss_pred cccCC-HHHHHHHHHhhhccC------ChHHHHHHHHHHhcCceecCCccccccCCCCC-CCcccccccccCCChHHHHH
Q 003575 162 RVVER-PQHMLMRVSVGIHKD------DTDSALKTYHLMSQHWFTHATPTLFNAGTPQP-QLSSCFLLCMKDDSIEGIYD 233 (810)
Q Consensus 162 ~~~E~-pq~~~~RVA~~l~~~------~~~~~~~~y~~ls~~~~~~atP~l~naGt~~~-~lsSCfl~~~~~DS~~~I~~ 233 (810)
+++|. |+++|.|||++|+.. +.+++++||++|++++|+||||||+|||++++ ||+||||+++++||++||++
T Consensus 125 ~~~e~~~~~~~~RVA~~la~~E~~~~~~~~~~~~fY~~Ls~~~f~PatPtL~NAGt~~~~~lssCFVl~~~~DSlegI~d 204 (858)
T PRK08115 125 KPLEIFYEQIAKRNATGLAAVEKTEEKRKESFEKFYQELVNMNFVPAGRVLYGAGSKTDVTYFNCYVMPFVKDSREGISE 204 (858)
T ss_pred CcccCCHHHHHHHHHHHHHhhccCcchHHHHHHHHHHHHHcCCeecCChHhhcCCCCCCCceeeEEecCCCCCCHHHHHH
Confidence 46785 999999999999853 25678899999999999999999999999988 89999999877899999999
Q ss_pred HHHHHHHHHHhcCCcceeeeeecCCCCcccCCCCCCCCcccHHHHHHHHHHHHhhCCCcccCceEEeecCCcccHHHHHH
Q 003575 234 TLKKCAIISKSAGGIGLSIHNIRASGSYIHGTNGSSNGIVPMLQVFNDTARYVDQGGGKRKGAFAIYLEPWHADIFEFLD 313 (810)
Q Consensus 234 ~~~~~a~isk~ggGiG~~~s~iR~~Gs~I~g~~g~ssG~vp~lk~~~~~~~~v~qgG~~Rrga~~~yl~~wH~DI~~Fl~ 313 (810)
+++++|+|+|+|||||+|||+|||+|++|+|++|+||||||||++||+++.+|+||| +||||+|+||++|||||++||+
T Consensus 205 ~~ke~a~i~k~GGGvG~nfS~LRp~Gs~I~g~~g~SSG~Vsfm~~fd~~~~~V~QGG-~RRGA~mv~L~~wHPDI~eFI~ 283 (858)
T PRK08115 205 HRKQVMEIMSRGGGVGTNGSTLRPRNTLARGVNGKSSGSVSWLDDIAKLTHLVEQGG-SRRGAQMIMLADWHPDILEFII 283 (858)
T ss_pred HHHHHHHHHhcCCeEEecccccCCCCCccCCCCCcCCCeecHHHHHHHHHHHHHhCC-CcccceEEEecCCcccHHHHHH
Confidence 999999999999999999999999999999999999999999999999999999999 8999999999999999999999
Q ss_pred hh-----------hhcCcccc-----------------------------------------------------------
Q 003575 314 LR-----------KNQGKEEC----------------------------------------------------------- 323 (810)
Q Consensus 314 ~K-----------~~~g~e~~----------------------------------------------------------- 323 (810)
+| +|+|++..
T Consensus 284 aK~~~~~~~~~l~~n~gde~~r~~a~ek~~~~~ls~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~lk~~~~~~~~~~ 363 (858)
T PRK08115 284 SKMQNPRILRYLLENTEDEQIKRLVKEKLKFTPLSEVEEAMYQAIVNYKNIEGQGGFDTKVIKEAENKLRTGGTYTVNNP 363 (858)
T ss_pred hccccchhhhhhhcccccHhhhhhhhhhhcccccchhhhhhhhhhhcccccccccccchhhhhhhhhhhccccccccccc
Confidence 88 45566532
Q ss_pred -cccccceecccCHHHHHHHhcCCceEEecCCCCC---CchhhhhhhHHHH--HHHHHHcC---ceeEEEeHHHHHHHHH
Q 003575 324 -RARDLFYALWVPDLFMERVRDDGKWSLFCPSDAS---GLADSWGIEFEHL--YSQYEEEG---RAKMVISARKLWFEIL 394 (810)
Q Consensus 324 -r~~~l~~sv~ipD~Fm~rv~~~~~w~Lf~P~~~~---~L~~~~g~eF~~~--Y~~~e~~~---~~~~~v~Ar~l~~~I~ 394 (810)
++.++|+||+|||+||++|++|++|+||+|+... .+.+.||++|.+. |.+|+..+ ..+++|+||+||++|+
T Consensus 364 ~~l~n~NiSV~itD~FMeaVe~d~~w~L~~P~~~~~~~~~~~~Y~~~~~~~gd~~~~e~~g~~~~v~~~I~AReLw~~I~ 443 (858)
T PRK08115 364 EFLTGANISVCLTKEFMEAVENDEEYELRFPDVENYTEEEMEIYNEEWHEVGDVREWEKMGYPVRTYRKIKAKELWNLIN 443 (858)
T ss_pred cccccceeEEEECHHHHHHHHcCCCEEEECCcccccchhhHhhhccccccchhHHHHhhcccccceeEEEcHHHHHHHHH
Confidence 2456899999999999999999999999997642 3556788888777 67777655 4678999999999999
Q ss_pred HHHHhhCCceeEechhhhhhCCCCCCC-eEEeecCCccccccCCCCCceeeeccccCchhhhhccCCccccccccccccC
Q 003575 395 NSQIETGTPYMLFKDSCNRKSNQQNLG-TIKSSNLCTEIVEFSSPEETAVCNLASIALPRYVREKGVPVQSNVSKLVGSR 473 (810)
Q Consensus 395 ~~~~etG~P~i~f~D~~Nr~~~~~~~g-~I~~sNlC~EI~~~~~~~e~~~CNL~SInL~~~v~~~~~~~~~~~~~~~g~~ 473 (810)
+++|+||+|||+|+|++|+++|+++.| +|.+||||+||++++ +++|||+||||++|++.
T Consensus 444 ~~a~etGePgI~F~D~iNr~nn~~~~g~~I~aTNPCgEqpL~p----~~sCNLgSINL~kfV~~---------------- 503 (858)
T PRK08115 444 ICATYSAEPGIFFIDNANEMTNAKAYGQKVVATNPCGEQPLAP----YSVCNLAAINLANMADK---------------- 503 (858)
T ss_pred HHHHHhCCCeEEEHHHhhhcCCccccCCeeeecCccccccCCC----CcccchHHHHHHHHhhc----------------
Confidence 999999999999999999999999888 899999999988753 78999999999999963
Q ss_pred CCCCccCCHHHHHHHHHHHHHHHHHHHhcCCCChHHHHHHhhccCCceeecchHHHHHHHcCCCCCCHHHHHHHHHHHHH
Q 003575 474 DSKNRLFDFERLAEVTKIITENLNKIIDVNHYPIETTRRSNLRHRPIGIGIQGLADTFILLGLPFESPEAQQLNKDIFET 553 (810)
Q Consensus 474 ~~~~~~fD~~~l~~~v~~avr~LD~vId~~~~p~~~~~~~~~~~R~iGlGv~Glad~L~~~gi~y~S~ea~~l~~~i~e~ 553 (810)
..+.|||+.|+++|+++|||||||||.+.||+++++++++++|+||||+|||||+|+++|+||+|+||++|+++||+.
T Consensus 504 --~~~~fD~~~L~~~V~~avRfLDnVID~n~yPl~e~~~~~~~~R~IGLGvmGLAD~L~~lgIpYdSeEA~~l~~~I~e~ 581 (858)
T PRK08115 504 --ETKTVDYEKLKRTVEVGVRMQDNVIDATPYFLEENKKQALGERRVGLGVMGLHDLLIYCETVYGSEEGNQLVDQIFET 581 (858)
T ss_pred --cccccCHHHHHHHHHHHHHHHHHHHhcCCCcHHHHHHHhhhcCCeeechhhHHHHHHHcCCCCCCHHHHHHHHHHHHH
Confidence 124799999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHcCCCCCCCCCccccCccccccccCCCCCcccHHHHHHHHHhcCccccceeccCCCcchhhhcCCC
Q 003575 554 IYYHALKASAELAVKDGPYETYFGSPMSKGILQVDMWNITPSDRWDWSSLREMISKNGVRNSLLVAPMPTASTSQILGNN 633 (810)
Q Consensus 554 i~~~a~~aS~eLAke~G~~~~f~~S~~~~G~l~~d~~~~~~~~~~dW~~Lr~~i~~~G~RNs~l~AiaPT~stS~i~g~s 633 (810)
|+++|++||++||+|+|+||.|++|+|++|.++.+.|....-....|+.|+++|++||+|||+++|||||||||+|+|+|
T Consensus 582 I~~~A~~AS~eLAkErG~FP~f~gs~~~~~~~~r~~~~~~~~~~~~~~~Lre~I~k~GiRNS~ltaIAPTGSiS~Iag~S 661 (858)
T PRK08115 582 IATTAYRTSIELAKEKGSFPFLVGQTEEETAKLREAFINTGYMKKMPEDIREDILKYGIRNSHLLTVAPTGSTGTMVGVS 661 (858)
T ss_pred HHHHHHHHHHHHHHHhCCCCcccCCchhhhhHHHhhhhhccccccCcHHHHHHHHHhCcchhceeeeCChHHHHHHhCCC
Confidence 99999999999999999999999999999877655443221112358999999999999999999999999999999999
Q ss_pred ccccccccceeeEEcccCceEEeCHHHHHHHHHcCCChHHHHHHHHhcCCccccccCCchHHHhhccccccCChHHHHHH
Q 003575 634 ECFEPYTSNIYTRRVLSGEFIVVNKHLLKDLTELGLWSHALKTKIIYENGSVSKISEIPEELKAIYKTVWEIKQKTLVDM 713 (810)
Q Consensus 634 ~gieP~~s~~y~r~~~~g~~~~vn~~l~~~l~~~g~~~~~~~~~i~~~~Gsv~~~~~lp~~~k~~y~tA~ei~~~~~i~~ 713 (810)
+||||+|+++|.|++..|+|+++|+++++++.+.+.| ..|++++.+|+|||||+|++||+|
T Consensus 662 sGIEPifs~~y~R~~~~G~f~~vn~~~~~~~l~~~~~-------------------~~~~~l~~~F~TA~eI~p~~hI~m 722 (858)
T PRK08115 662 TGLEPYFSFSYYRSGRLGKFIEVKADIVQEYLDKHPE-------------------ADENHLPEWFISAMELKPEAHADV 722 (858)
T ss_pred cccCcCeeeeEEEEeccCceEEEchHHHHHHHHhCCC-------------------CCchhHHHhcccHhhCCHHHHHHH
Confidence 9999999999999999999999999988776543311 135667789999999999999999
Q ss_pred HHHhCcccccccceeEeeCC-CChHHHHHHHHHHHHcCCceEEEEecCcccccccccc
Q 003575 714 AADRGCYIDQSQSLNIHMEQ-PDHGKLTSLHFYAWSKGMKTGMYYLRTRAAADAIKFT 770 (810)
Q Consensus 714 ~a~~Q~~vDqs~S~nl~~~~-~~~~~l~~~~~~Awk~GlKt~~yY~r~~~~~~~~~~~ 770 (810)
||++|||||||||+|||+|+ .+.++|.++|++||+.||||+|||++..+..+.....
T Consensus 723 qAa~Qk~VDqsISkTInlP~~at~edV~~iY~~Awk~GlKGiTvYrdGSr~~qvL~~~ 780 (858)
T PRK08115 723 QCIIQRWVDSSLSKTVNAPKGYTVEQVQKVYERLYRGGAKGGTVYVDGSRDAQVLTLK 780 (858)
T ss_pred HHHHccccchhhcCcccCCCCCCHHHHHHHHHHHHHcCCCEEEEeCCCCccceeeeec
Confidence 99999999999999999996 5899999999999999999999998887777665443
No 21
>TIGR02504 NrdJ_Z ribonucleoside-diphosphate reductase, adenosylcobalamin-dependent. This model identifies genes in a wide range of deeply branching bacteria. All are structurally related to the class I (non-heme iron dependent) RNRs. In most species this gene is known as NrdJ, while in mycobacteria it is called NrdZ.
Probab=100.00 E-value=1.5e-140 Score=1232.10 Aligned_cols=564 Identities=33% Similarity=0.535 Sum_probs=531.2
Q ss_pred HHHhhccc-cCCcccCCHHHHHHHHHhhhccCCh--------HHHHHHHHHHhcCceecCCccccc-cCCCCCCCccccc
Q 003575 151 LERSYLLK-MDSRVVERPQHMLMRVSVGIHKDDT--------DSALKTYHLMSQHWFTHATPTLFN-AGTPQPQLSSCFL 220 (810)
Q Consensus 151 l~~~Yllk-~~g~~~E~pq~~~~RVA~~l~~~~~--------~~~~~~y~~ls~~~~~~atP~l~n-aGt~~~~lsSCfl 220 (810)
|.++|++| .+|.++|+||++|+|||++++..+. +++++||++|++++|+|+||+|+| +|++++|++||||
T Consensus 2 l~~rY~~k~~~g~~~E~~~~~~~RvA~~la~~~~~~~~~~~~~~~~~fy~~l~~~~~~patp~l~n~~g~~~~~lssCfv 81 (586)
T TIGR02504 2 LAARYLLKDEDGGIIESPEDLFRRVARALAAAEDKYNSPVWKQWYERFYDLMVNLGFMPNSPTLMNAGGTRLGQLSACFV 81 (586)
T ss_pred hhhhhceecCCCCccCCHHHHHHHHHHHHHhhhcccccchhHHHHHHHHHHHHcCeEEccchhhhcccCCCCCcceeeEC
Confidence 67899999 5688899999999999999986432 578999999999999999999999 8999999999999
Q ss_pred ccccCCChHHHHHHHHHHHHHHHhcCCcceeeeeecCCCCcccCCCCCCCCcccHHHHHHHHHHHHhhCCCcccCceEEe
Q 003575 221 LCMKDDSIEGIYDTLKKCAIISKSAGGIGLSIHNIRASGSYIHGTNGSSNGIVPMLQVFNDTARYVDQGGGKRKGAFAIY 300 (810)
Q Consensus 221 ~~~~~DS~~~I~~~~~~~a~isk~ggGiG~~~s~iR~~Gs~I~g~~g~ssG~vp~lk~~~~~~~~v~qgG~~Rrga~~~y 300 (810)
+++ +||+++|+++++++++++|.|||||+|+|+|||+|++|+|++|.||||||||++||+++.+|+||| +||||+|+|
T Consensus 82 ~~v-~Ds~~~I~~~~~~~a~i~k~GGGvG~~~s~iRp~G~~i~g~~g~ssG~v~~~~~~d~~~~~v~qgG-~RrgA~~~~ 159 (586)
T TIGR02504 82 LPV-EDDMESIFEAAKEAALIFKRGGGVGYNFSTLRPKGAKVSGTGGVASGPVSFMRVFDAAAGVIKQGG-TRRGAQMGI 159 (586)
T ss_pred CCC-CCCHHHHHHHHHHHHHHHhcCCceeecccccCCCCCccCCCCCCCCCchhHHHHHHHHHHHHHcCC-cccCceEEE
Confidence 987 899999999999999999999999999999999999999999999999999999999999999999 899999999
Q ss_pred ecCCcccHHHHHHhhhhcCcccccccccceecccCHHHHHHHhcCCceEEecCCCCCCchhhhhhhHHHHHHHHHHcCce
Q 003575 301 LEPWHADIFEFLDLRKNQGKEECRARDLFYALWVPDLFMERVRDDGKWSLFCPSDASGLADSWGIEFEHLYSQYEEEGRA 380 (810)
Q Consensus 301 l~~wH~DI~~Fl~~K~~~g~e~~r~~~l~~sv~ipD~Fm~rv~~~~~w~Lf~P~~~~~L~~~~g~eF~~~Y~~~e~~~~~ 380 (810)
|++|||||++||++|++.|+ .+++|+||+|||+|||+|++|++|+||+|.+++.+.+.|| | +..+..
T Consensus 160 l~~~HpDi~~Fi~~K~~~~~----~~~~n~sv~i~D~Fm~~v~~d~~w~L~~p~~~~~~~~~y~--~-------~~~~~~ 226 (586)
T TIGR02504 160 LDVWHPDIEEFIEAKKKEGK----LTNFNISVGVTDAFMEAVEADEEYKLRNPRTGEEIEELAE--L-------DPKNKV 226 (586)
T ss_pred EeCCCchHHHHHHhcccccc----hhcceehcccCHHHHHHHHcCCCeEEECCCcccccccccc--c-------ccccce
Confidence 99999999999999998765 5799999999999999999999999999999999999988 2 345667
Q ss_pred eEEEeHHHHHHHHHHHHHhhCCceeEechhhhhhCCCCCCCeEEeecCCccccccCCCCCceeeeccccCchhhhhccCC
Q 003575 381 KMVISARKLWFEILNSQIETGTPYMLFKDSCNRKSNQQNLGTIKSSNLCTEIVEFSSPEETAVCNLASIALPRYVREKGV 460 (810)
Q Consensus 381 ~~~v~Ar~l~~~I~~~~~etG~P~i~f~D~~Nr~~~~~~~g~I~~sNlC~EI~~~~~~~e~~~CNL~SInL~~~v~~~~~ 460 (810)
+++|+||+||++|++++|+||+|||+|+|++|+++|+++.|+|.+||||+||+|++ .++|||+||||++|+.++
T Consensus 227 ~~~v~Arel~~~I~~~~~~tGePgi~f~D~~N~~~~~~~~~~i~~tNpC~Ei~l~~----~~~CnL~SiNL~~~v~~~-- 300 (586)
T TIGR02504 227 YKEVPARELWDKIVEAAWKSAEPGLLFIDTINKWHPCPYGGRINATNPCGEQPLLP----YESCNLGSINLAKFVKNG-- 300 (586)
T ss_pred eeEEEHHHHHHHHHHHHHHhCCCeEEEhhhhhhcCCCccCCceeeccCCccccccC----CcccchHHhhHHHHhhCC--
Confidence 89999999999999999999999999999999999999999999999999999974 459999999999999752
Q ss_pred ccccccccccccCCCCCccCCHHHHHHHHHHHHHHHHHHHhcCCCChHHHHHHhhccCCceeecchHHHHHHHcCCCCCC
Q 003575 461 PVQSNVSKLVGSRDSKNRLFDFERLAEVTKIITENLNKIIDVNHYPIETTRRSNLRHRPIGIGIQGLADTFILLGLPFES 540 (810)
Q Consensus 461 ~~~~~~~~~~g~~~~~~~~fD~~~l~~~v~~avr~LD~vId~~~~p~~~~~~~~~~~R~iGlGv~Glad~L~~~gi~y~S 540 (810)
...|||+.|+++|+++||+||+|||++.||+|++++.+++.|+||||+|||||+|+++|++|+|
T Consensus 301 ----------------~~~fD~~~l~~~v~~avr~LD~vid~~~~p~~~~~~~~~~~R~iGlGv~Glad~L~~lgi~y~S 364 (586)
T TIGR02504 301 ----------------FGSFDFERLREVVRLATRFLDNVIDLNRFPLPEIAEATKKTRRIGLGIMGLADLLIKLGIPYDS 364 (586)
T ss_pred ----------------CCccCHHHHHHHHHHHHHHHHHHHHhccCchHHHHHHHhcCCccccchhHHHHHHHHcCCCcCC
Confidence 1269999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCCCCCCccccCccccccccCCCCCcccHHHHHHHHHhcCccccceecc
Q 003575 541 PEAQQLNKDIFETIYYHALKASAELAVKDGPYETYFGSPMSKGILQVDMWNITPSDRWDWSSLREMISKNGVRNSLLVAP 620 (810)
Q Consensus 541 ~ea~~l~~~i~e~i~~~a~~aS~eLAke~G~~~~f~~S~~~~G~l~~d~~~~~~~~~~dW~~Lr~~i~~~G~RNs~l~Ai 620 (810)
+||++++++|||.|+++|+++|++||+|+|+||.|++|+|++|.+++..+ + ...|++|++.|++||+|||++|||
T Consensus 365 ~ea~~~~~~i~~~i~~~a~~aS~~LA~e~G~fp~f~~s~~~~g~~~~~~~---~--~~~~~~L~~~i~~~G~RNs~l~ai 439 (586)
T TIGR02504 365 EEARAFAEELMAFIADAAYRASAELAKERGPFPLFEASRYEMGRAMGARI---P--SALPAELREAIAKYGIRNAQLTTI 439 (586)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCCcccChhhccccccccc---c--ccChHHHHHHHHHhCCCccceeee
Confidence 99999999999999999999999999999999999999999999873322 1 236999999999999999999999
Q ss_pred CCCcchhhhcCCCccccccccceeeEEcccC-ceEEeCHHHHHHHHHcCCChHHHHHHHHhcCCccccccCCchHHHhhc
Q 003575 621 MPTASTSQILGNNECFEPYTSNIYTRRVLSG-EFIVVNKHLLKDLTELGLWSHALKTKIIYENGSVSKISEIPEELKAIY 699 (810)
Q Consensus 621 aPT~stS~i~g~s~gieP~~s~~y~r~~~~g-~~~~vn~~l~~~l~~~g~~~~~~~~~i~~~~Gsv~~~~~lp~~~k~~y 699 (810)
|||||+|+|+|+|+||||+|+++|.|++..| ++.++|++|.+.|++.|+|+++++..+ ..+|+++++|. |++++.+|
T Consensus 440 aPTgtiS~i~g~S~gieP~~a~~y~r~~~~g~~~~~~n~~l~~~l~~~g~~~~~~~~~~-~~~gs~~~~~~-p~~~~~~f 517 (586)
T TIGR02504 440 APTGTISLIAGTSSGIEPVFALVYFRNVTVGGELLEVNPIVELALRELGYYSDQIVKYV-DEKGTVEGAPG-PEELPKVF 517 (586)
T ss_pred CCCchhhhhcCCCCccccchhhhhheeeccCCcEEEeCHHHHHHHHHcCCChHHHHHHH-HcCCCcccCCC-chhHHhhc
Confidence 9999999999999999999999999998887 999999999999999999999988865 57899999999 99999999
Q ss_pred cccccCChHHHHHHHHHhCcccccccceeEeeCC-CChHHHHHHHHHHHHcCCceEEEEe
Q 003575 700 KTVWEIKQKTLVDMAADRGCYIDQSQSLNIHMEQ-PDHGKLTSLHFYAWSKGMKTGMYYL 758 (810)
Q Consensus 700 ~tA~ei~~~~~i~~~a~~Q~~vDqs~S~nl~~~~-~~~~~l~~~~~~Awk~GlKt~~yY~ 758 (810)
+||+||+|++||+|+|++|||||||||+|||+++ .+.++|.++|++||++||||+|||.
T Consensus 518 ~tA~di~~~~~i~~~a~~Q~~vD~siS~ti~~~~~~~~~~v~~~y~~A~~~GlK~it~yR 577 (586)
T TIGR02504 518 VTANDVSPEDHVLMQAAIQPWVDSSISKTINMPSDATVEDVKAAYLLAWKLGLKGITVYR 577 (586)
T ss_pred cCcccCCHHHHHHHHHHHcCcccccccCeeecCCCCCHHHHHHHHHHHHHhCCCEEEEEe
Confidence 9999999999999999999999999999999996 5899999999999999999988873
No 22
>PRK06948 ribonucleotide reductase-like protein; Provisional
Probab=100.00 E-value=4e-137 Score=1195.89 Aligned_cols=565 Identities=22% Similarity=0.319 Sum_probs=498.4
Q ss_pred ccccCCCChhhHHHHHHhhccccCCcccCCHHHHHHHHHhhhcc-----CChHHHHHHHHHHhcCceecCCccccccCCC
Q 003575 137 YDRDFDFDYFGFKTLERSYLLKMDSRVVERPQHMLMRVSVGIHK-----DDTDSALKTYHLMSQHWFTHATPTLFNAGTP 211 (810)
Q Consensus 137 ~~rd~~~~y~g~~~l~~~Yllk~~g~~~E~pq~~~~RVA~~l~~-----~~~~~~~~~y~~ls~~~~~~atP~l~naGt~ 211 (810)
--+++.++-.+..+|.+|||+| | .++||++|||||++++. .+.+++++||++|++++ +|+||||+|+|++
T Consensus 6 ~~~~~~~~~~~~~~l~~rYl~~--~--e~~p~~~~~RVA~~la~~e~~~~~~~~~~~fy~~ls~~~-~patp~l~NaG~~ 80 (595)
T PRK06948 6 MIGDMDEQPICDAVFADRYALP--G--ETSRAQVFARVARALALAEPPDTRAGAARRFYRNLLNGA-IGAGRIMANAGAA 80 (595)
T ss_pred CCCCCCCCHHHHHHHHHhcCCC--C--CCCHHHHHHHHHHHHhhhccccccHHHHHHHHHHHHcCC-cccChhhhcCCCC
Confidence 3466788999999999999997 2 13799999999999986 34578899999999965 8999999999999
Q ss_pred C-CCCcccccccccCC-----ChHHHHHHHHHHHHHHHhcCCcceeeeeecCCCCcccCCCCCCCCcccHHHHHHHHHHH
Q 003575 212 Q-PQLSSCFLLCMKDD-----SIEGIYDTLKKCAIISKSAGGIGLSIHNIRASGSYIHGTNGSSNGIVPMLQVFNDTARY 285 (810)
Q Consensus 212 ~-~~lsSCfl~~~~~D-----S~~~I~~~~~~~a~isk~ggGiG~~~s~iR~~Gs~I~g~~g~ssG~vp~lk~~~~~~~~ 285 (810)
+ +||+||||+++++| ++++|+++++++|+++|.|||||+|||+|||+|++|+|++|.||||||||++||+++.+
T Consensus 81 ~~~~lssCfv~~v~d~~~~~~~~~~i~~~~~~~a~~~k~GGGvG~~~s~lR~~G~~i~~~~g~ssG~v~fm~~~d~~~~~ 160 (595)
T PRK06948 81 PDQTMVNCFVHPIRAPAALTAVHPNLDRALDDARLTLLMGGGIGYDFSAIPPADARPDADHPDSPGVCAALDRFDRICAA 160 (595)
T ss_pred CCCceeeeEEcccccccccccchhhHHHHHHHHHHHHhhcCeeeecccccCCCCCcCCCCCCCCCChhhHHHHHHHHHHH
Confidence 8 58999999987433 26999999999999999999999999999999999999999999999999999999999
Q ss_pred HhhCCCcccCceEEeecCCcccHHHHHHhhhhcCcccccccccceecccCHHHHHHHhcCCceEEecCCCCCCchhhhhh
Q 003575 286 VDQGGGKRKGAFAIYLEPWHADIFEFLDLRKNQGKEECRARDLFYALWVPDLFMERVRDDGKWSLFCPSDASGLADSWGI 365 (810)
Q Consensus 286 v~qgG~~Rrga~~~yl~~wH~DI~~Fl~~K~~~g~e~~r~~~l~~sv~ipD~Fm~rv~~~~~w~Lf~P~~~~~L~~~~g~ 365 (810)
|+||| +||||+|+||++|||||++||++|+ ++.|++++|+||+|||+|||+|++|++|+||+|++. .+++|+
T Consensus 161 v~Qgg-~RrGA~~~~L~~~HpDI~~Fi~~K~----~~~~~~~~n~sv~i~D~FM~~v~~d~~~~L~~p~~~---~~~~~~ 232 (595)
T PRK06948 161 LPFRD-GRRGAQMAVLRCDHPDLLAFVAAKR----GRARWTTFNLSVAVTDAFMQAVAQDLPWALRHRAPP---RRAAGG 232 (595)
T ss_pred HHhCC-CCccCeEEEEcCCCCCHHHHHHhcC----CccccccceeeEeECHHHHHHHHcCCCeEeeCCccc---cccccc
Confidence 99998 8999999999999999999999998 346899999999999999999999999999999864 334554
Q ss_pred hHHHHHHHHHHcCc-eeEEEeHHHHHHHHHHHHHhhCCceeEechhhhhhCCCCCCCeEEeecCCccccccCCCCCceee
Q 003575 366 EFEHLYSQYEEEGR-AKMVISARKLWFEILNSQIETGTPYMLFKDSCNRKSNQQNLGTIKSSNLCTEIVEFSSPEETAVC 444 (810)
Q Consensus 366 eF~~~Y~~~e~~~~-~~~~v~Ar~l~~~I~~~~~etG~P~i~f~D~~Nr~~~~~~~g~I~~sNlC~EI~~~~~~~e~~~C 444 (810)
++ ++++|. .+++|+||+||++|++++|+||+|||+|+|++|++||+++.|+|.+||||+||++++ +++|
T Consensus 233 ~~------~~~~g~~~~~~v~Arel~~~I~~~~~~tGePgi~F~D~iN~~n~~~~~g~I~~tNpC~Ei~L~~----~~~C 302 (595)
T PRK06948 233 AL------RGADGAWTYATVPARHLWREIVSAARDSAEPGLLFVDTIDAANPLREHERIDATNPCGEQPLPP----YGSC 302 (595)
T ss_pred cc------hhccCcceeeEEcHHHHHHHHHHHHHHHCCCeEEeHhHHHhhCCCccCCcEEeecCCCCcccCC----CCce
Confidence 33 134555 689999999999999999999999999999999999999999999999999998874 5799
Q ss_pred eccccCchhhhhccCCccccccccccccCCCCCccCCHHHHHHHHHHHHHHHHHHHhcCCCChHHHHHHhhccCCceeec
Q 003575 445 NLASIALPRYVREKGVPVQSNVSKLVGSRDSKNRLFDFERLAEVTKIITENLNKIIDVNHYPIETTRRSNLRHRPIGIGI 524 (810)
Q Consensus 445 NL~SInL~~~v~~~~~~~~~~~~~~~g~~~~~~~~fD~~~l~~~v~~avr~LD~vId~~~~p~~~~~~~~~~~R~iGlGv 524 (810)
||+||||++||+++. ...+...|||++|+++|+++|||||||||++.||+|++++.++++|+||||+
T Consensus 303 NLgSINL~~~v~~~~-------------~~~~~~~~D~~~l~~~v~~avR~LDnvid~~~~p~~~~~~~~~~~R~IGLGv 369 (595)
T PRK06948 303 VLGPIDLSRFVRHPF-------------GVGGEPRFDFAALATAVRIQVRMLDNALDLTRWPLAAHAREARQKRRIGVGV 369 (595)
T ss_pred eccceeHHHHhcccc-------------ccccccccCHHHHHHHHHHHHHHHHHHhcccCCCcHHHHHHhhcCCCceecH
Confidence 999999999997420 0012247999999999999999999999999999999999999999999999
Q ss_pred chHHHHHHHcCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCCCCCCccccCccccccccCCCCCcccHHHHH
Q 003575 525 QGLADTFILLGLPFESPEAQQLNKDIFETIYYHALKASAELAVKDGPYETYFGSPMSKGILQVDMWNITPSDRWDWSSLR 604 (810)
Q Consensus 525 ~Glad~L~~~gi~y~S~ea~~l~~~i~e~i~~~a~~aS~eLAke~G~~~~f~~S~~~~G~l~~d~~~~~~~~~~dW~~Lr 604 (810)
|||||+|+++|++|+|+||++|+++|||+|+++|+++|++||+|+|+||.|++|+|.+|.+.. ...|++|+
T Consensus 370 mGlad~L~~lgi~Y~S~ea~~~~~~i~~~i~~~A~~aS~eLA~ErG~fp~f~~s~~~~~~~~~---------~~~~~~l~ 440 (595)
T PRK06948 370 TGLADALTMMRLRYDSPAAREMARYIASDLRHHAYAASAALAAERGAYPLCDPAAHLDALRAG---------PPLPHAVC 440 (595)
T ss_pred HHHHHHHHHcCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCCCCcChhhcccccc---------ccCcHHHH
Confidence 999999999999999999999999999999999999999999999999999999999886531 12489999
Q ss_pred HHHHhcCccccceeccCCCcchhhhc--CCCccccccccceeeEEcccCceEEeCHHHHHHHHHcCCChHHHHHHHHhcC
Q 003575 605 EMISKNGVRNSLLVAPMPTASTSQIL--GNNECFEPYTSNIYTRRVLSGEFIVVNKHLLKDLTELGLWSHALKTKIIYEN 682 (810)
Q Consensus 605 ~~i~~~G~RNs~l~AiaPT~stS~i~--g~s~gieP~~s~~y~r~~~~g~~~~vn~~l~~~l~~~g~~~~~~~~~i~~~~ 682 (810)
++|++||+|||++||||||||||+|+ |+|+||||+|+++|.|++..|++... +++.+.....
T Consensus 441 ~~i~~~G~RNs~ltaIAPTgSiS~i~~~~~S~GieP~fa~~y~R~~~~g~~~~~-----------~~~~~~~~~~----- 504 (595)
T PRK06948 441 HAIARHGLRNSHLLSFAPVGSVSLAFGDNCSPGIEPARAWIEHRPVRAGAGGAR-----------GMRAENHAYR----- 504 (595)
T ss_pred HHHHHhCcchhheeeeCCcHHHHHHhcCCCCCCcccceeeeEEEEeccCCCccc-----------ceeeechhhh-----
Confidence 99999999999999999999999998 48999999999999999988875421 1111111111
Q ss_pred CccccccCCchHHHhhccccccCChHHHHHHHHHhCcccccccceeEeeCC-CChHHHHHHHHHHHHcCCceEEEEecCc
Q 003575 683 GSVSKISEIPEELKAIYKTVWEIKQKTLVDMAADRGCYIDQSQSLNIHMEQ-PDHGKLTSLHFYAWSKGMKTGMYYLRTR 761 (810)
Q Consensus 683 Gsv~~~~~lp~~~k~~y~tA~ei~~~~~i~~~a~~Q~~vDqs~S~nl~~~~-~~~~~l~~~~~~Awk~GlKt~~yY~r~~ 761 (810)
.++.++..|++++++|+||+||+|++||+|||++|||||||||+|||+++ .+.++|.++|++||+.||||+ ||+|..
T Consensus 505 -~~~~~~~~~~~~~~~f~tA~di~~~~~i~~~A~~Qk~vDqsiS~Tvn~~~~~t~~dv~~~y~~Aw~~GlKgi-t~~R~~ 582 (595)
T PRK06948 505 -LFRSLRGERAALPDYFVTAADVAPADHLAMRAALQPYVDAGISKTVTLPNHYSLAEVDALLFQAWRAGLKGI-TIFRPD 582 (595)
T ss_pred -hccccCCCchhHHhhcCcHhhCCHHHHHHHHHHHcccchhhccCeEeeCCCCCHHHHHHHHHHHHHcCCCEE-EEEeCC
Confidence 12234455677889999999999999999999999999999999999997 589999999999999999995 555765
Q ss_pred ccc
Q 003575 762 AAA 764 (810)
Q Consensus 762 ~~~ 764 (810)
...
T Consensus 583 ~~~ 585 (595)
T PRK06948 583 PAL 585 (595)
T ss_pred ccc
Confidence 443
No 23
>TIGR02510 NrdE-prime ribonucleoside-diphosphate reductase, alpha chain. This model represents a small clade of ribonucleoside-diphosphate reductase, alpha chains which are sufficiently divergent from the usual Class I RNR alpha chains (NrdE or NrdA, TIGR02506) as to warrant their own model. The genes from Thermus thermophilus, Dichelobacter and Salinibacter are adjacent to the usual RNR beta chain.
Probab=100.00 E-value=4.3e-136 Score=1179.33 Aligned_cols=525 Identities=28% Similarity=0.410 Sum_probs=488.7
Q ss_pred ccccCCCChhhHHHHHHhhccccCCcccCCHHHHHHHHHhhhccC--ChHHHHHHHHHHhcCceecCCccccccCCCCCC
Q 003575 137 YDRDFDFDYFGFKTLERSYLLKMDSRVVERPQHMLMRVSVGIHKD--DTDSALKTYHLMSQHWFTHATPTLFNAGTPQPQ 214 (810)
Q Consensus 137 ~~rd~~~~y~g~~~l~~~Yllk~~g~~~E~pq~~~~RVA~~l~~~--~~~~~~~~y~~ls~~~~~~atP~l~naGt~~~~ 214 (810)
+++++-|+|+|+++|.++|++| | |+||++|||||++++.. +.+++++||++|++++|+||||||+|+|++++|
T Consensus 12 ~~~~~~~~~~~~~~l~~rYl~~--~---es~~~~~~RVA~~la~~~~~~~~~~~fy~~Ls~~~f~patP~l~NaGt~~~~ 86 (571)
T TIGR02510 12 GEIPEFANAHGRLMFKKGYLLK--G---ESVEEAFKEIAQRAAAHDIREEAEEKFFDLLARGKLALATPIFANTGLDRGL 86 (571)
T ss_pred ccchhhhhHHHHHHHHHhhcCC--C---CCHHHHHHHHHHHHhccccchHHHHHHHHHHHcCCeecCChhhhcCCCCCCC
Confidence 4566778999999999999997 2 89999999999999963 457788999999999999999999999999999
Q ss_pred CcccccccccCCChHHHHHHHHHHHHHHHhcCCcceeeeeecCCCCcccCCCCCCCCcccHHHHHHHHHHHHh--hCCCc
Q 003575 215 LSSCFLLCMKDDSIEGIYDTLKKCAIISKSAGGIGLSIHNIRASGSYIHGTNGSSNGIVPMLQVFNDTARYVD--QGGGK 292 (810)
Q Consensus 215 lsSCfl~~~~~DS~~~I~~~~~~~a~isk~ggGiG~~~s~iR~~Gs~I~g~~g~ssG~vp~lk~~~~~~~~v~--qgG~~ 292 (810)
++||||+++ +||++||+++++++++++|.|||||+|||+|||+|++|+ ++|+|+|++|||++||.++.+++ ||| +
T Consensus 87 lsSCFv~~v-~Dsl~~I~~~~~e~a~l~k~GGGiG~~~S~lR~~G~~I~-~~g~ssG~~~~m~~~d~~~~~i~~~qgg-~ 163 (571)
T TIGR02510 87 PISCAGSYV-EDDTADFLEAQAEVAMLAKNGFGTALYLGDIRPRGADIR-DNGEHNGADAFAPLFDNFIETFNKVAAA-G 163 (571)
T ss_pred eeeEEeCCC-CCCHHHHHHHHHHHHHHHhcCCeeeeeccccCCCCCccC-CCCCCCCcchHHHHHHHHHHHHHHhhCC-c
Confidence 999999987 899999999999999999999999999999999999998 57799999999999999999999 998 8
Q ss_pred ccCceEEeecCCcccHHHHHHhhhhcCcccccccccceecccCHHHHHHHhcCCceEEecCCCCCCchhhhhhhHHHHHH
Q 003575 293 RKGAFAIYLEPWHADIFEFLDLRKNQGKEECRARDLFYALWVPDLFMERVRDDGKWSLFCPSDASGLADSWGIEFEHLYS 372 (810)
Q Consensus 293 Rrga~~~yl~~wH~DI~~Fl~~K~~~g~e~~r~~~l~~sv~ipD~Fm~rv~~~~~w~Lf~P~~~~~L~~~~g~eF~~~Y~ 372 (810)
||||+|+||++|||||++||++|+++| +++++|+||+++|.||++++++.
T Consensus 164 RrGA~~~~L~~~HpDI~eFi~~K~~~~----~~~~~~~~v~~~d~f~~~~~~~~-------------------------- 213 (571)
T TIGR02510 164 RRGECAAYLDFEHGDFEELLGIQLEHP----ASAHLFWGFEKEDRWLEELIAGD-------------------------- 213 (571)
T ss_pred CccceEEEEcCCcccHHHHHHhcccCC----CCCceeeeeccCHHHHHHHHhCC--------------------------
Confidence 999999999999999999999998876 46899999999999999998641
Q ss_pred HHHHcCceeEEEeHHHHHHHHHHHHHhhCCceeEechhhhhhCCC--CCCC-eEEeecCCccccccCCCCCceeeecccc
Q 003575 373 QYEEEGRAKMVISARKLWFEILNSQIETGTPYMLFKDSCNRKSNQ--QNLG-TIKSSNLCTEIVEFSSPEETAVCNLASI 449 (810)
Q Consensus 373 ~~e~~~~~~~~v~Ar~l~~~I~~~~~etG~P~i~f~D~~Nr~~~~--~~~g-~I~~sNlC~EI~~~~~~~e~~~CNL~SI 449 (810)
.++|+||++|++++|+||+||++|+|++|+++|+ ++.| +|++||||+||+|++.++++++|||+||
T Consensus 214 -----------~~ar~lw~~I~~~~~etG~P~l~f~D~~N~~~p~~~~~~G~~I~asNlC~Ei~l~~~~~~~~~CnLgSi 282 (571)
T TIGR02510 214 -----------GEKMARWAELLKMRAETGIGYLFFNDIANEKAPEAFKALGIPIRASNLCTEIALPSDDEESFTCCLSSL 282 (571)
T ss_pred -----------chHHHHHHHHHHHHHHhCCceEEEhHHhhhhCchhhhhcCCeEEecCCCcceeccCCCCceeeeecchh
Confidence 0368999999999999999999999999999986 6788 8999999999999999999999999999
Q ss_pred CchhhhhccCCccccccccccccCCCCCccCCHHHHHHHHHHHHHHHHHHHh-----cCCCC---hHHHHHHhhccCCce
Q 003575 450 ALPRYVREKGVPVQSNVSKLVGSRDSKNRLFDFERLAEVTKIITENLNKIID-----VNHYP---IETTRRSNLRHRPIG 521 (810)
Q Consensus 450 nL~~~v~~~~~~~~~~~~~~~g~~~~~~~~fD~~~l~~~v~~avr~LD~vId-----~~~~p---~~~~~~~~~~~R~iG 521 (810)
||++|+.. ..+++|+++||+|||||| ++.+| +++++++++++|+||
T Consensus 283 NL~~~~~~--------------------------~~~~~v~~avr~LDnViD~~i~~~~~~p~~~~~~~~~~~~~~R~IG 336 (571)
T TIGR02510 283 NLLHWDEI--------------------------KDADAIETLVIFLDSVCDDFIAKAEEIPYDTLEKAIRFAEKARAIG 336 (571)
T ss_pred hHHHHhhc--------------------------ccccHHHHHHHHHHHHHHHhhhhcccCCchhHHHHHHHHHhcCCcc
Confidence 99998642 124899999999999999 46565 588888899999999
Q ss_pred eecchHHHHHHHcCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCCCCCCccccCccccccccCCCCCcccHH
Q 003575 522 IGIQGLADTFILLGLPFESPEAQQLNKDIFETIYYHALKASAELAVKDGPYETYFGSPMSKGILQVDMWNITPSDRWDWS 601 (810)
Q Consensus 522 lGv~Glad~L~~~gi~y~S~ea~~l~~~i~e~i~~~a~~aS~eLAke~G~~~~f~~S~~~~G~l~~d~~~~~~~~~~dW~ 601 (810)
||||||||+|+++|++|+|+||++++++|||+|+++|++||++||+|+|+|+
T Consensus 337 LGvmGlad~L~~lgi~Y~S~ea~~~~~~i~e~i~~~A~~aS~eLA~ErG~~~---------------------------- 388 (571)
T TIGR02510 337 LGTLGFHSYLQMNDIAFESGAAFILNAEIFAEIKEAAEEASRELAEEHGEDE---------------------------- 388 (571)
T ss_pred cchhHHHHHHHHcCCCcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCcch----------------------------
Confidence 9999999999999999999999999999999999999999999999999853
Q ss_pred HHHHHHHhcCccccceeccCCCcchhhhcC-CCccccccccceeeEEcccCceEEeCHHHHHHHHHcCCC---hHHHHHH
Q 003575 602 SLREMISKNGVRNSLLVAPMPTASTSQILG-NNECFEPYTSNIYTRRVLSGEFIVVNKHLLKDLTELGLW---SHALKTK 677 (810)
Q Consensus 602 ~Lr~~i~~~G~RNs~l~AiaPT~stS~i~g-~s~gieP~~s~~y~r~~~~g~~~~vn~~l~~~l~~~g~~---~~~~~~~ 677 (810)
|++.++++|+|||+++|||||||||+|+| +|+||||+|+++|+|++.+|+|+++|++|.+.|++.|+| ++++++.
T Consensus 389 -l~~~~~~~G~RNs~l~aiAPTgSiS~i~g~~S~gIEP~fa~~y~r~~~~g~~~~vn~~l~~~l~~~g~~~~~~~~~~~~ 467 (571)
T TIGR02510 389 -LAEVCEGKEMRNATLIAIAPNKSSAFIAGGVSPGIEPLTCNSFIKDLNAADFPFKNPFLAEVLKDKGKDKEIEEKMEDI 467 (571)
T ss_pred -hHHHHHhcCceeceeeeeCCcchHHHHhCCCCCCcCcchhhhhhhhccCCceEEECHHHHHHHHhcCCccccHHHHHHH
Confidence 23346789999999999999999999996 999999999999999999999999999999999999999 7889999
Q ss_pred HHhcCCccccccCCchHHHhhccccccCChHHHHHHHHHhCcccccccceeEeeCC--CChHHHHHHHHHHHHcCCceEE
Q 003575 678 IIYENGSVSKISEIPEELKAIYKTVWEIKQKTLVDMAADRGCYIDQSQSLNIHMEQ--PDHGKLTSLHFYAWSKGMKTGM 755 (810)
Q Consensus 678 i~~~~Gsv~~~~~lp~~~k~~y~tA~ei~~~~~i~~~a~~Q~~vDqs~S~nl~~~~--~~~~~l~~~~~~Awk~GlKt~~ 755 (810)
|..++|+||+++.+|++++++|+|||||+|++||+|+|++|||||||||+|+|+++ .+.+++..+|++|||+|||| +
T Consensus 468 i~~~~gsv~~~~~l~~~~~~~f~tA~ei~~~~~I~m~A~~Q~~IDqsiS~Nl~~~~~~~~~~d~~~~y~~Aw~~GlK~-~ 546 (571)
T TIGR02510 468 ALEHNGSVQHLDFLTDEEKAVFKTAAEIDQHAIINLAAARQKHIDQAQSINLFFHADEAEPRDANAHRAFADDPGLKA-L 546 (571)
T ss_pred HHHcCCCccccccCChHHHhHcCcHHhCCHHHHHHHHHHHccccccccCCccccCCCCCCHHHHHHHHHHHHHcCCCe-E
Confidence 99999999999999999999999999999999999999999999999999999975 47799999999999999999 9
Q ss_pred EEecCcccccc
Q 003575 756 YYLRTRAAADA 766 (810)
Q Consensus 756 yY~r~~~~~~~ 766 (810)
||||+++++.+
T Consensus 547 YY~rs~~~~~~ 557 (571)
T TIGR02510 547 YYLFSERGAKA 557 (571)
T ss_pred EeecchHHHHh
Confidence 99999888766
No 24
>PRK06556 vitamin B12-dependent ribonucleotide reductase; Validated
Probab=100.00 E-value=1.1e-134 Score=1206.32 Aligned_cols=587 Identities=23% Similarity=0.387 Sum_probs=524.4
Q ss_pred ccccCCC----ChhhHHHHHHhhccccCCccc--CCHHHHHHHHHhhhccCC--------hH----HHHHHHHHHhcCce
Q 003575 137 YDRDFDF----DYFGFKTLERSYLLKMDSRVV--ERPQHMLMRVSVGIHKDD--------TD----SALKTYHLMSQHWF 198 (810)
Q Consensus 137 ~~rd~~~----~y~g~~~l~~~Yllk~~g~~~--E~pq~~~~RVA~~l~~~~--------~~----~~~~~y~~ls~~~~ 198 (810)
.-||..| +-.+..+|.+||+.+..|... |+|.++|.|||.+++.-. .+ ...+||++|++++|
T Consensus 52 ~~~~~e~p~~~s~~a~~vl~~rY~~~~~g~~~~e~S~~q~f~RVA~~~a~~~~~~~~~~~~~~~~~f~~ef~~~L~~~~f 131 (953)
T PRK06556 52 EQRDVEFPKFWSVNATNIVASKYFRGAVGTPERENSLKQLIDRVVKTYTDAGREHGYFATEEDAEIFEHELTWLLLHQKF 131 (953)
T ss_pred eccCCcCCccccHHHHHHHHhhhhccCCCCCcccCCHHHHHHHHHHHHHHHHhhcccccChhHHHHHHHHHHHHHHcCcE
Confidence 3455544 567789999999987557653 699999999999987411 11 34478999999999
Q ss_pred ecCCccccccCCC-CCCCcccccccccCCChHHHHHHHHHHHHHHHhcCCcceeeeeecCCCCcccCCCCCCCCcccHHH
Q 003575 199 THATPTLFNAGTP-QPQLSSCFLLCMKDDSIEGIYDTLKKCAIISKSAGGIGLSIHNIRASGSYIHGTNGSSNGIVPMLQ 277 (810)
Q Consensus 199 ~~atP~l~naGt~-~~~lsSCfl~~~~~DS~~~I~~~~~~~a~isk~ggGiG~~~s~iR~~Gs~I~g~~g~ssG~vp~lk 277 (810)
+|+||||+|+|++ ++|++||||+++ +||+++|+++++++++|+|+|||||+|||+|||+|++| +++|+|||||||||
T Consensus 132 ~pnSP~l~NaG~~~~~qlssCFvl~v-~Dsle~I~~~~~~~a~i~K~GGGvG~nfS~LRp~G~~i-s~gG~sSGpvsFmk 209 (953)
T PRK06556 132 SFNSPVWFNVGTESPQQVSACFILSV-DDSMESILNWYKEEGMLFKGGSGTGTNLSRIRSSKELL-SGGGTASGPVSFMR 209 (953)
T ss_pred ecCChHhhcCCCCCCCceeeEEeCCC-CCCHHHHHHHHHHHHHHHhcCCcEEEeccccCCCCCcC-CCCCCCCChhhHHH
Confidence 9999999999997 569999999997 89999999999999999999999999999999999999 77999999999999
Q ss_pred HHHHHHHHHhhCCCcccCceEEeecCCcccHHHHHHhhhhcCcc-------------------cccccccceecccCHHH
Q 003575 278 VFNDTARYVDQGGGKRKGAFAIYLEPWHADIFEFLDLRKNQGKE-------------------ECRARDLFYALWVPDLF 338 (810)
Q Consensus 278 ~~~~~~~~v~qgG~~Rrga~~~yl~~wH~DI~~Fl~~K~~~g~e-------------------~~r~~~l~~sv~ipD~F 338 (810)
+||+++.+|+|||.+||||.|+||++|||||++||++|...... ..+..|+|+||+|||+|
T Consensus 210 i~D~~~~~ikqGG~tRRGA~mv~L~vdHPDI~eFI~~K~~e~~k~~~l~~~~~~~d~~~~~~~~v~~~n~N~SV~vtD~F 289 (953)
T PRK06556 210 GADASAGTIKSGGATRRAAKMVILDVDHPDIEEFIETKAKEEDKIRALRDAGYDMDLGGEAYSSVQYQNANNSVRVSDEF 289 (953)
T ss_pred HHHHHHHHHHcCCCccCcceEEEecCCCccHHHHHHhcccchhhhhhhhhcccccccccccccccccccccceEEECHHH
Confidence 99999999999985699999999999999999999999743210 01356789999999999
Q ss_pred HHHHhcCCceEEecCCCCCCchhhhhhhHHHHHHHHHHcCceeEEEeHHHHHHHHHHHHHhhCCceeEechhhhhhCCCC
Q 003575 339 MERVRDDGKWSLFCPSDASGLADSWGIEFEHLYSQYEEEGRAKMVISARKLWFEILNSQIETGTPYMLFKDSCNRKSNQQ 418 (810)
Q Consensus 339 m~rv~~~~~w~Lf~P~~~~~L~~~~g~eF~~~Y~~~e~~~~~~~~v~Ar~l~~~I~~~~~etG~P~i~f~D~~Nr~~~~~ 418 (810)
|++|++|++|.|++|.+ |..+++|+||+||++|++++|+||+|||+|+|++|+++|++
T Consensus 290 M~aV~~d~~~~L~~~~~----------------------g~v~~~v~AreLw~~I~~~aw~tGdPgi~F~D~iNr~~~~~ 347 (953)
T PRK06556 290 MRAVENDGEFGLRARTD----------------------GEVIETVDAKELFRKIAEAAWECADPGIQYDDTINDWHTCP 347 (953)
T ss_pred HHHHHcCCCeEEecccc----------------------CceeeeeeHHHHHHHHHHHHHHhCCCeEEechhhhhhCCCc
Confidence 99999999999999853 56788999999999999999999999999999999999999
Q ss_pred CCCeEEeecCCccccccCCCCCceeeeccccCchhhhhccCCccccccccccccCCCCCccCCHHHHHHHHHHHHHHHHH
Q 003575 419 NLGTIKSSNLCTEIVEFSSPEETAVCNLASIALPRYVREKGVPVQSNVSKLVGSRDSKNRLFDFERLAEVTKIITENLNK 498 (810)
Q Consensus 419 ~~g~I~~sNlC~EI~~~~~~~e~~~CNL~SInL~~~v~~~~~~~~~~~~~~~g~~~~~~~~fD~~~l~~~v~~avr~LD~ 498 (810)
+.|+|.+||||+||+++. ..+|||+||||.+|+.++ ..|||+.|+++|+++||+||+
T Consensus 348 ~~g~I~aSNpC~E~~l~~----~~sCNLgSINL~~fv~~~-------------------~~fD~~~l~~aV~~avr~LD~ 404 (953)
T PRK06556 348 ESGRINASNPCSEYMFLD----NSSCNLASLNLMKFLRDD-------------------GTFDVESFRHAVELVITAMEI 404 (953)
T ss_pred ccCceEeecCccccccCC----cccccceeeEHHHhhccc-------------------CccCHHHHHHHHHHHHHHHHH
Confidence 999999999999999874 248999999999999642 269999999999999999999
Q ss_pred HHhcCCCChHHHHHHhhccCCceeecchHHHHHHHcCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCCCCCC
Q 003575 499 IIDVNHYPIETTRRSNLRHRPIGIGIQGLADTFILLGLPFESPEAQQLNKDIFETIYYHALKASAELAVKDGPYETYFGS 578 (810)
Q Consensus 499 vId~~~~p~~~~~~~~~~~R~iGlGv~Glad~L~~~gi~y~S~ea~~l~~~i~e~i~~~a~~aS~eLAke~G~~~~f~~S 578 (810)
|||++.||+|++++.++++|+||||+|||||+|+++|++|+|+||++|+++||+.|+++|+++|++||+|+|+||.|++|
T Consensus 405 vId~~~yP~~~i~~~~~~~R~IGLGvmGlad~L~~lGi~YdS~ea~~la~~I~~~m~~~A~~aS~eLA~e~G~Fp~f~~s 484 (953)
T PRK06556 405 SICFADFPTEKIARNTRAFRQLGLGYANLGALLMATGLPYDSDGGRALAAAITSLMTGEAYRRSAELAGVVGPFEGYARN 484 (953)
T ss_pred HHhhccCChHHHHHHHHhccchhhhhhHHHHHHHHcCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCCcccC
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cccc-Ccccc--ccccC------CC-----CCcccHHHHHHHHHhcCccccceeccCCCcchhhhcCC-Cccccccccce
Q 003575 579 PMSK-GILQV--DMWNI------TP-----SDRWDWSSLREMISKNGVRNSLLVAPMPTASTSQILGN-NECFEPYTSNI 643 (810)
Q Consensus 579 ~~~~-G~l~~--d~~~~------~~-----~~~~dW~~Lr~~i~~~G~RNs~l~AiaPT~stS~i~g~-s~gieP~~s~~ 643 (810)
+|.. |.+.. +.|.. .| ....+|++|++.+++||+|||+++|||||||||+|+|+ |+||||+|+++
T Consensus 485 ~~~~~~v~~~h~~~~~~~~~~~~~~~~l~~~~~~~W~~l~~~~~~~G~RNa~~taIAPTGTiS~i~g~~SsGIEP~fa~v 564 (953)
T PRK06556 485 AEPHLRVMRKHAAANDAIRPLGEVDAALLEAAKEAWDDALELGEKNGYRNAQASVLAPTGTIGFMMDCDTTGIEPDFALV 564 (953)
T ss_pred hhhhhchhhhhhhhhhhhhhhccCchhhhhhhhhhHHHHHHHHHHhCcccccceeecCchHHHHhcCCCCCCcccceeee
Confidence 8754 33322 22211 11 12357999999999999999999999999999999998 99999999999
Q ss_pred eeEEc-ccCceEEeCHHHHHHHHHcCCChHHHHHHH--HhcCCccccccCCchHHHhhccccc-------cCChHHHHHH
Q 003575 644 YTRRV-LSGEFIVVNKHLLKDLTELGLWSHALKTKI--IYENGSVSKISEIPEELKAIYKTVW-------EIKQKTLVDM 713 (810)
Q Consensus 644 y~r~~-~~g~~~~vn~~l~~~l~~~g~~~~~~~~~i--~~~~Gsv~~~~~lp~~~k~~y~tA~-------ei~~~~~i~~ 713 (810)
|.|++ ..|+|.+||++|.+.|+++|++++++.+.+ +..+|+++++|.||++.+.+|+||+ ||+|++||+|
T Consensus 565 ~~rk~~~~G~~~~vN~~~~~~L~~~G~~~~ei~~i~~~~~~~gsv~~~p~L~~e~~~vF~tA~~~~~g~rdI~p~~hI~m 644 (953)
T PRK06556 565 KYKKLVGGGSMKIVNQTVPRALKKLGYSEEQIEAIVEYIAEHGHIEGAPGLKPEHYAVFDCAMKPASGERSISPMGHVRM 644 (953)
T ss_pred eeEEeccCceeEEecHHHHHHHHHcCCCHHHHHHHHHHHHhCCCeecCCCCChHHhhhceeccccCCCCCccCHHHHHHH
Confidence 88874 578899999999999999999998865432 4578999999999999999999999 9999999999
Q ss_pred HHHhCcccccccceeEeeCC-CChHHHHHHHHHHHHcCCceEEEEecCcccccccccc
Q 003575 714 AADRGCYIDQSQSLNIHMEQ-PDHGKLTSLHFYAWSKGMKTGMYYLRTRAAADAIKFT 770 (810)
Q Consensus 714 ~a~~Q~~vDqs~S~nl~~~~-~~~~~l~~~~~~Awk~GlKt~~yY~r~~~~~~~~~~~ 770 (810)
+|++|||||||||+|||+|+ .+.++|.++|++|||+||||+|||....+..++....
T Consensus 645 ~Aa~Q~fID~aiSkTvnlp~~at~edv~~~y~~Awk~GlKgit~YRdgsk~~qvL~~~ 702 (953)
T PRK06556 645 MAAVQPFLSGAISKTVNMPEDATVEDIEEVYLEGWKLGLKALAIYRDNCKVGQPLNTS 702 (953)
T ss_pred HHHHhhhcccccceEEEcCCCCCHHHHHHHHHHHHHhCCCeEEEEcCCCcccceeecc
Confidence 99999999999999999995 7899999999999999999999998777776665543
No 25
>PF02867 Ribonuc_red_lgC: Ribonucleotide reductase, barrel domain; InterPro: IPR000788 Ribonucleotide reductase (1.17.4.1 from EC) [, ] catalyzes the reductive synthesis of deoxyribonucleotides from their corresponding ribonucleotides. It provides the precursors necessary for DNA synthesis. RNRs divide into three classes on the basis of their metallocofactor usage. Class I RNRs, found in eukaryotes, bacteria, bacteriophage and viruses, use a diiron-tyrosyl radical, Class II RNRs, found in bacteria, bacteriophage, algae and archaea, use coenzyme B12 (adenosylcobalamin, AdoCbl). Class III RNRs, found in anaerobic bacteria and bacteriophage, use an FeS cluster and S-adenosylmethionine to generate a glycyl radical. Many organisms have more than one class of RNR present in their genomes. Ribonucleotide reductase is an oligomeric enzyme composed of a large subunit (700 to 1000 residues) and a small subunit (300 to 400 residues) - class II RNRs are less complex, using the small molecule B12 in place of the small chain []. The reduction of ribonucleotides to deoxyribonucleotides involves the transfer of free radicals, the function of each metallocofactor is to generate an active site thiyl radical. This thiyl radical then initiates the nucleotide reduction process by hydrogen atom abstraction from the ribonucleotide []. The radical-based reaction involves five cysteines: two of these are located at adjacent anti-parallel strands in a new type of ten-stranded alpha/beta-barrel; two others reside at the carboxyl end in a flexible arm; and the fifth, in a loop in the centre of the barrel, is positioned to initiate the radical reaction []. There are several regions of similarity in the sequence of the large chain of prokaryotes, eukaryotes and viruses spread across 3 domains: an N-terminal domain common to the mammalian and bacterial enzymes; a C-terminal domain common to the mammalian and viral ribonucleotide reductases; and a central domain common to all three [].; GO: 0004748 ribonucleoside-diphosphate reductase activity, 0006260 DNA replication, 0055114 oxidation-reduction process, 0005971 ribonucleoside-diphosphate reductase complex; PDB: 1DQ3_A 1XJN_A 1XJK_A 3O0O_B 1XJF_A 3O0Q_A 1XJJ_A 1XJG_A 1XJM_B 3O0N_B ....
Probab=100.00 E-value=1.5e-135 Score=1182.22 Aligned_cols=525 Identities=45% Similarity=0.760 Sum_probs=474.0
Q ss_pred CcccccccccCCChHHHHHHHHHHHHHHHhcCCcceeeeeecCCCCcccCCCCCCCCcccHHHHHHHHHHHHhhCCCccc
Q 003575 215 LSSCFLLCMKDDSIEGIYDTLKKCAIISKSAGGIGLSIHNIRASGSYIHGTNGSSNGIVPMLQVFNDTARYVDQGGGKRK 294 (810)
Q Consensus 215 lsSCfl~~~~~DS~~~I~~~~~~~a~isk~ggGiG~~~s~iR~~Gs~I~g~~g~ssG~vp~lk~~~~~~~~v~qgG~~Rr 294 (810)
||||||+...+||+++|+++++++++++|.|||||+|+|.|||+|++|+|++|.|+||||||++||+++++++||| +||
T Consensus 1 LssCfl~~~~~Ds~~~I~~~~~~~~~~~~~ggGvG~~~s~lR~~G~~i~~~~~~ssG~v~~~~~~~~~~~~i~q~g-~Rr 79 (538)
T PF02867_consen 1 LSSCFLMISVEDSLESIFDTLKEAARLSKYGGGVGIDFSNLRPKGSPIRGTGGKSSGPVSFMKLFDSSARAINQGG-KRR 79 (538)
T ss_dssp S-SEEEEEESSSSHHHHHHHHHHHHHHHCTT-EEEEEGTTS--TTCBETTTSSBCCHHHHHHHHHHHHHHHSSSTT-SSS
T ss_pred CceeeccCCCCCCHHHHHHHHHHHHHHHHhCCCCCCcccccCCCCCcccccCCCCCCchhHHHHHHHHhhHhhhcc-ccc
Confidence 7999994434899999999999999999999999999999999999999999999999999999999999999999 899
Q ss_pred CceEEeecCCcccHHHHHHhhhhcCcccccccccceecccCHHHHHHHhcCCceEEecCCCCCCchhhhhhhHHHHHHHH
Q 003575 295 GAFAIYLEPWHADIFEFLDLRKNQGKEECRARDLFYALWVPDLFMERVRDDGKWSLFCPSDASGLADSWGIEFEHLYSQY 374 (810)
Q Consensus 295 ga~~~yl~~wH~DI~~Fl~~K~~~g~e~~r~~~l~~sv~ipD~Fm~rv~~~~~w~Lf~P~~~~~L~~~~g~eF~~~Y~~~ 374 (810)
||.|+||++|||||++||++|+++|++++|++++|+||+|||+||++|++|++|+||+|+++|.|.+.||++|++.|.++
T Consensus 80 Ga~~~~l~~~HpDi~~fi~~k~~~~~~~~r~~~~n~sv~i~D~Fm~~v~~~~~w~L~~p~~~~~l~~~~g~~f~~~y~~~ 159 (538)
T PF02867_consen 80 GAQMVYLDIWHPDIEEFIDAKNNNGDEERRLRNLNISVNIPDEFMEAVENDEDWYLFDPRDAPELYDLYGEEFEKEYERY 159 (538)
T ss_dssp TEEEEEEETTBTTHHHHCTTTSSSSTCCG-STTEEEEEEE-HHHHHHHHTT-EEEEBCTTCSTTHHHHHHHHHHHHHHHH
T ss_pred cceeeeccCCHHHHHHHHHHhhcccchhhhhcccceeEEecHHHHHHhhcCCCCEEECCCcccchhhhhCCcHHHHHHHh
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHcC-ceeEEEeHHHHHHHHHHHHHhhCCceeEechhhhhhCCCCCCCeEEeecCCccccccCCCCCceeeeccccCchh
Q 003575 375 EEEG-RAKMVISARKLWFEILNSQIETGTPYMLFKDSCNRKSNQQNLGTIKSSNLCTEIVEFSSPEETAVCNLASIALPR 453 (810)
Q Consensus 375 e~~~-~~~~~v~Ar~l~~~I~~~~~etG~P~i~f~D~~Nr~~~~~~~g~I~~sNlC~EI~~~~~~~e~~~CNL~SInL~~ 453 (810)
++++ ..+++|+||+||++|++++|+||+||++|+|++||++|+++.|+|++||||+||+|+++++++++|||+||||++
T Consensus 160 ~~~~~~~~~~v~Ar~l~~~I~~~~~~tG~Pgi~f~D~~Nr~~~~~~~~~I~~sN~C~Ei~l~~~~~~~~~CnL~SiNL~~ 239 (538)
T PF02867_consen 160 ERNGKIRKKTVPARELWEKILESAWETGEPGIIFIDNVNRHNPLKHGGPIRASNPCGEIPLPTSPDPYASCNLGSINLAR 239 (538)
T ss_dssp HHTTTSEEEEEEHHHHHHHHHHHHHHHS-SEEEEHHHHHHTSTTGGTSTEEEE-TTSSSEEE-BTTBTEEEEEEEEEGGG
T ss_pred hcCCCceeccccHHHHHHHHHHHHhhhCCceehhhHHHHhcCcccCCCeEeecCCCcceeecccccccccceeeeechhh
Confidence 9876 588999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hhhccCCccccccccccccCCCCCccCCHHHHHHHHHHHHHHHHHHHhcCCCChHHHHHHhhccCCceeecchHHHHHHH
Q 003575 454 YVREKGVPVQSNVSKLVGSRDSKNRLFDFERLAEVTKIITENLNKIIDVNHYPIETTRRSNLRHRPIGIGIQGLADTFIL 533 (810)
Q Consensus 454 ~v~~~~~~~~~~~~~~~g~~~~~~~~fD~~~l~~~v~~avr~LD~vId~~~~p~~~~~~~~~~~R~iGlGv~Glad~L~~ 533 (810)
|+.++ ...|||+.|+++|+++||+||+|||.+.||+|++++.++++|+||||+|||||+|++
T Consensus 240 ~~~~~------------------~~~~d~~~l~~~v~~avr~Ld~vid~~~~p~~~~~~~~~~~R~iGlGv~Gla~~L~~ 301 (538)
T PF02867_consen 240 FVEDP------------------FGRFDWEELREVVRLAVRFLDNVIDINDYPLPEARRANKRYRSIGLGVMGLADMLAK 301 (538)
T ss_dssp GCETT------------------SCEETHHHHHHHHHHHHHHHHHHHHHS--SSHHHHHHHHHH--EEEEEESHHHHHHH
T ss_pred hcccc------------------cccccHHHHhhHHHHHHHHHHHHHhhcCCCcHHHHHHHHhcCccccccccHHHHHHh
Confidence 99752 257999999999999999999999999999999999999999999999999999999
Q ss_pred cCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCCCCCCccccCccccccccCCC-----------CCcccHHH
Q 003575 534 LGLPFESPEAQQLNKDIFETIYYHALKASAELAVKDGPYETYFGSPMSKGILQVDMWNITP-----------SDRWDWSS 602 (810)
Q Consensus 534 ~gi~y~S~ea~~l~~~i~e~i~~~a~~aS~eLAke~G~~~~f~~S~~~~G~l~~d~~~~~~-----------~~~~dW~~ 602 (810)
+|++|+|+||++++++|||.|+|+|++||++||+|+|+||+|++|+|++|+++++.|.... ....+|++
T Consensus 302 ~gi~y~S~ea~~~~~~i~e~i~~~a~~aS~~LA~e~G~~~~f~~s~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~W~~ 381 (538)
T PF02867_consen 302 LGIPYDSEEARELADEIFEHIYYAAYRASVELAKERGPFPWFEKSKYARGELPFDRWDKLVDERSKVEKGLSIPTEDWDE 381 (538)
T ss_dssp TT--TTSHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-SSTTGGGSTGGGTCCHHHHTTCSCCGSSHHHCT---TTSHHHH
T ss_pred CCcCcCCchHHHHHHHHHHHHHHHHHHHHHHHhccCCcCCCCCCCchhcccchhhhhhhccccccccccccccchhhHHH
Confidence 9999999999999999999999999999999999999999999999999999999886431 12348999
Q ss_pred HHHHHHhcCccccceeccCCCcchhhhcCCCccccccccceeeEEcccCceEEeCHHHHHHHHHcCCChHHHHHHHHhcC
Q 003575 603 LREMISKNGVRNSLLVAPMPTASTSQILGNNECFEPYTSNIYTRRVLSGEFIVVNKHLLKDLTELGLWSHALKTKIIYEN 682 (810)
Q Consensus 603 Lr~~i~~~G~RNs~l~AiaPT~stS~i~g~s~gieP~~s~~y~r~~~~g~~~~vn~~l~~~l~~~g~~~~~~~~~i~~~~ 682 (810)
||++|++||+|||+++|||||||||+|+|+|+||||+|+++|.|++..|++..+|+++.+.|+++|+|+++++++|..++
T Consensus 382 Lr~~i~~~G~RNs~~~aiAPTgs~S~i~g~S~gIeP~~~~~~~r~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~i~~~~ 461 (538)
T PF02867_consen 382 LREDIKKYGLRNSQLTAIAPTGSISLIAGTSSGIEPIFANVYTRRSLSGEFPVVNPYLLRDLKELGIWDEELIEEILRHQ 461 (538)
T ss_dssp HHHHHHHH--SSSS-BBBS--TTHHHHHTS-STTS--SSSEEEEEETTSCEEEE-HHHHHHHHHTTHHSHHHHHHHHHTT
T ss_pred HHHHHhhhcCCcceeecCCCCCCeEeecCcCceeccchhhhhhhhhhcCCCcccChHHHHHHHHhCCcHHHHHHHHHhhh
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CccccccCCchHHHhhccccccCChHHHHHHHHHhCcccccccceeEeeCC-CChHHHHHHHHHHHHcCCceEEEEe
Q 003575 683 GSVSKISEIPEELKAIYKTVWEIKQKTLVDMAADRGCYIDQSQSLNIHMEQ-PDHGKLTSLHFYAWSKGMKTGMYYL 758 (810)
Q Consensus 683 Gsv~~~~~lp~~~k~~y~tA~ei~~~~~i~~~a~~Q~~vDqs~S~nl~~~~-~~~~~l~~~~~~Awk~GlKt~~yY~ 758 (810)
|++++++.+|++.+.+|+||+||+|++||+|||++|||||||||+|+|+|+ .+.++|..+|++||++||||+|||+
T Consensus 462 gsv~~~~~~~~~~~~~f~tA~ei~~~~~i~~~a~~Q~~vDqsiS~t~~~p~~~~~~~v~~~~~~A~~~GlK~~tyY~ 538 (538)
T PF02867_consen 462 GSVQGLPELPDELKDVFKTAFEIDPEDHIRMQAARQKFVDQSISKTLNLPSDATVEDVAELYLYAWKLGLKGITYYR 538 (538)
T ss_dssp TCCTT-TTS-HHHHHHT--GGGSCHHHHHHHHHHHHTTSSS-B-BEEEEGTTEEHHHHHHHHHHHHHTT-SEEECEE
T ss_pred ccccccccCCcchhhhcccHHhCCHHHHHHHHHHhhccCccCcCceeeecCCCCHHHHHHHHHHHHHhCCCeeEEeC
Confidence 999999999999999999999999999999999999999999999999985 6889999999999999999999995
No 26
>cd01679 RNR_I Class I ribonucleotide reductase. Ribonucleotide reductase (RNR) catalyzes the reductive synthesis of deoxyribonucleotides from their corresponding ribonucleotides. It provides the precursors necessary for DNA synthesis. RNRs are separated into three classes based on their metallocofactor usage. Class I RNRs, found in eukaryotes, bacteria, and many viruses, use a diiron-tyrosyl radical. Class II RNRs, found in bacteria, bacteriophage, algae and archaea, use coenzyme B12 (adenosylcobalamin, AdoCbl). Class III RNRs, found in anaerobic bacteria, bacteriophages, and archaea, use an FeS cluster and S-adenosylmethionine to generate a glycyl radical. Many organisms have more than one class of RNR present in their genomes. All three RNRs have a ten-stranded alpha-beta barrel domain that is structurally similar to the domain of PFL (pyruvate formate lyase). Class I RNR is oxygen-dependent and can be subdivided into classes Ia (eukaryotes, prokaryotes, viruses and phages) and Ib (
Probab=100.00 E-value=8.7e-128 Score=1090.31 Aligned_cols=454 Identities=63% Similarity=1.000 Sum_probs=440.5
Q ss_pred HHHHHHHHHhhhccCChHHHHHHHHHHhcCceecCCccccccCCCCCCCcccccccccCCChHHHHHHHHHHHHHHHhcC
Q 003575 167 PQHMLMRVSVGIHKDDTDSALKTYHLMSQHWFTHATPTLFNAGTPQPQLSSCFLLCMKDDSIEGIYDTLKKCAIISKSAG 246 (810)
Q Consensus 167 pq~~~~RVA~~l~~~~~~~~~~~y~~ls~~~~~~atP~l~naGt~~~~lsSCfl~~~~~DS~~~I~~~~~~~a~isk~gg 246 (810)
||++|||||++++..+.+++++||++|++++|+||||+|+|+|++++||+||||+.+ +||++||+++++++++++|.||
T Consensus 1 pq~~~~rvA~~la~~~~~~~~~fy~~l~~~~~~patp~l~naG~~~~~lssCfl~~v-~Ds~e~i~~~~~~~~~l~~~gg 79 (460)
T cd01679 1 PQDRLMRVALGLASGDLEWAKEFYDLLSKQRFTPATPTLFNAGTPRGQLSSCFLLTV-DDSLESIYDTIKECAQLSKIGG 79 (460)
T ss_pred ChHHHHHHHHHHhcCCHHHHHHHHHHHHcCCeecCCHHhhcCCCCCCCcccccCCCC-CCCHHHHHHHHHHHHHHhhcCC
Confidence 899999999999988999999999999999999999999999999999999999987 7999999999999999999999
Q ss_pred CcceeeeeecCCCCcccCCCCCCCCcccHHHHHHHHHHHHhhCCCcccCceEEeecCCcccHHHHHHhhhhcCccccccc
Q 003575 247 GIGLSIHNIRASGSYIHGTNGSSNGIVPMLQVFNDTARYVDQGGGKRKGAFAIYLEPWHADIFEFLDLRKNQGKEECRAR 326 (810)
Q Consensus 247 GiG~~~s~iR~~Gs~I~g~~g~ssG~vp~lk~~~~~~~~v~qgG~~Rrga~~~yl~~wH~DI~~Fl~~K~~~g~e~~r~~ 326 (810)
|||+|+|+|||+|++|+|++|.|||||||+++||+++.+++||| +||||+|+||++|||||++||++|++.|+++.|++
T Consensus 80 GvG~~~s~iRp~G~~i~~~~g~ssG~v~~~~~~~~~~~~i~qgg-~RrgA~~~~l~~~HpDi~~Fi~~K~~~~~~~~r~~ 158 (460)
T cd01679 80 GIGLNLSNIRATGSPIRGTNGASNGVIPFLKLLNDTARYVDQGG-QRKGAGAVYLEIWHPDIEEFLDLKKNNGDERRRAR 158 (460)
T ss_pred EEEEeccccCCCCCcccCCCCCCCChhhHHHHHHHHHHHHHcCC-ccccceEEEEeCCCCcHHHHHHHhhccCchhhHhh
Confidence 99999999999999999999999999999999999999999998 89999999999999999999999999999999999
Q ss_pred ccceecccCHHHHHHHhcCCceEEecCCCCCCchhhhhhhHHHHHHHHHHcCceeEEEeHHHHHHHHHHHHHhhCCceeE
Q 003575 327 DLFYALWVPDLFMERVRDDGKWSLFCPSDASGLADSWGIEFEHLYSQYEEEGRAKMVISARKLWFEILNSQIETGTPYML 406 (810)
Q Consensus 327 ~l~~sv~ipD~Fm~rv~~~~~w~Lf~P~~~~~L~~~~g~eF~~~Y~~~e~~~~~~~~v~Ar~l~~~I~~~~~etG~P~i~ 406 (810)
++|+||||||+|||+|+ |+||++|++++|+||+|||+
T Consensus 159 ~~n~~v~i~D~Fm~~v~-------------------------------------------r~l~~~I~~~~~~tG~P~i~ 195 (460)
T cd01679 159 DLFYGVWIPDLFMERVE-------------------------------------------RDLWRKILESQFETGYPYIL 195 (460)
T ss_pred cCceeeeeCHHHHHHHH-------------------------------------------HHHHHHHHHHHHHhCCcHHH
Confidence 99999999999999997 89999999999999999999
Q ss_pred echhhhhhCCCCCCCeEEeecCCccccccCC-----CCCceeeeccccCchhhhhccCCccccccccccccCCCCCccCC
Q 003575 407 FKDSCNRKSNQQNLGTIKSSNLCTEIVEFSS-----PEETAVCNLASIALPRYVREKGVPVQSNVSKLVGSRDSKNRLFD 481 (810)
Q Consensus 407 f~D~~Nr~~~~~~~g~I~~sNlC~EI~~~~~-----~~e~~~CNL~SInL~~~v~~~~~~~~~~~~~~~g~~~~~~~~fD 481 (810)
|+|++|+++|+++.|+|++||||+||+|++. ++++++|||+||||++|++
T Consensus 196 f~D~~N~~~~~~~~~~I~~sNpC~Ei~l~~~~~~~~~~~~~~CnL~sinL~~~v~------------------------- 250 (460)
T cd01679 196 FKDTCNRKNPQKHLGTIKSSNLCTEILQPTSPSEDEPGEDAVCNLASINLGNFVT------------------------- 250 (460)
T ss_pred hhHHHHhcCCcccCCeEEeeccccccccCCccccccCCCcceeecHHhHHHHHhC-------------------------
Confidence 9999999999999999999999999999987 5788999999999999973
Q ss_pred HHHHHHHHHHHHHHHHHHHhcCCCChHHHHHHhhccCCceeecchHHHHHHHcCCCCCCHHHHHHHHHHHHHHHHHHHHH
Q 003575 482 FERLAEVTKIITENLNKIIDVNHYPIETTRRSNLRHRPIGIGIQGLADTFILLGLPFESPEAQQLNKDIFETIYYHALKA 561 (810)
Q Consensus 482 ~~~l~~~v~~avr~LD~vId~~~~p~~~~~~~~~~~R~iGlGv~Glad~L~~~gi~y~S~ea~~l~~~i~e~i~~~a~~a 561 (810)
|++|+++|+++||+||+|||.+.||+|++++.++++|+||||+|||||+|+++|++|+|+||++++++|||.|+++|+++
T Consensus 251 ~~~l~~~v~~avr~lD~vid~~~~p~~~~~~~~~~~R~iGlGv~Glad~L~~~gi~y~s~ea~~~~~~i~e~i~~~a~~a 330 (460)
T cd01679 251 FEKLEEVVKLAVRALDNVIDLNYYPVPEAKRSNMRHRAIGLGVMGLHDYLALLRIPYESEEALDLNDRIFETINYYALKA 330 (460)
T ss_pred hHHHHHHHHHHHHHHHHHHhccCCCcHHHHHHHHhcCcccccchHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHHHH
Confidence 58999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHcCCCCCCCCCccccCccccccccCCCCCcccHHHHHHHHHhcCccccceeccCCCcchhhhcCCCcccccccc
Q 003575 562 SAELAVKDGPYETYFGSPMSKGILQVDMWNITPSDRWDWSSLREMISKNGVRNSLLVAPMPTASTSQILGNNECFEPYTS 641 (810)
Q Consensus 562 S~eLAke~G~~~~f~~S~~~~G~l~~d~~~~~~~~~~dW~~Lr~~i~~~G~RNs~l~AiaPT~stS~i~g~s~gieP~~s 641 (810)
|++||+|+| |+|||++||||||||||+|+|+|+||||+|+
T Consensus 331 S~~LA~e~G----------------------------------------G~RNs~l~aiaPTgs~S~l~g~S~gieP~~a 370 (460)
T cd01679 331 SCELAKERG----------------------------------------GLRNSLLLAIAPTASISQILGATPSIEPITS 370 (460)
T ss_pred HHHHHHHhC----------------------------------------CccccceeeeCCccHHHHhcCCCCCcCcccc
Confidence 999999998 7899999999999999999999999999999
Q ss_pred ceeeEEcccCceEEeCHHHHHHHHHcCCChHHHHHHHHhcCCccccccCCchHHHhhccccccCChHHHHHHHHHhCccc
Q 003575 642 NIYTRRVLSGEFIVVNKHLLKDLTELGLWSHALKTKIIYENGSVSKISEIPEELKAIYKTVWEIKQKTLVDMAADRGCYI 721 (810)
Q Consensus 642 ~~y~r~~~~g~~~~vn~~l~~~l~~~g~~~~~~~~~i~~~~Gsv~~~~~lp~~~k~~y~tA~ei~~~~~i~~~a~~Q~~v 721 (810)
++|.|++.+|+|.++|++|.+++.+.| +|+|||||+|++||+|+|++||||
T Consensus 371 ~~~~R~~~~g~~~~~n~~l~~~~~~~g-----------------------------~f~ta~di~~~~~i~~~a~~Q~~v 421 (460)
T cd01679 371 NIYVRRVLSGEFPVVNPHLEKDLWEYG-----------------------------LYKTAYEIDQRWLIDLAADRQKHI 421 (460)
T ss_pred ceeEEEccCCcEEEECHHHHHHHHHcC-----------------------------ccccHHhCCHHHHHHHHHHHccCc
Confidence 999999999999999999988876533 799999999999999999999999
Q ss_pred ccccceeEeeCC-CChHHHHHHHHHHHHcCCceEEEEecC
Q 003575 722 DQSQSLNIHMEQ-PDHGKLTSLHFYAWSKGMKTGMYYLRT 760 (810)
Q Consensus 722 Dqs~S~nl~~~~-~~~~~l~~~~~~Awk~GlKt~~yY~r~ 760 (810)
|||||+|+|+++ .+.++|.++|++|||.||||+ ||||+
T Consensus 422 DqsiS~t~~~~~~~~~~~i~~~~~~a~~~GlK~~-YY~r~ 460 (460)
T cd01679 422 DQGQSLNLFLTPPATTRDLNSLYFYAWKKGLKTL-YYLRT 460 (460)
T ss_pred ccccCceeecCCCCCHHHHHHHHHHHHHcCCCeE-EEeCC
Confidence 999999999997 589999999999999999995 99996
No 27
>cd02888 RNR_II_dimer Class II ribonucleotide reductase, dimeric form. Ribonucleotide reductase (RNR) catalyzes the reductive synthesis of deoxyribonucleotides from their corresponding ribonucleotides. It provides the precursors necessary for DNA synthesis. RNRs are separated into three classes based on their metallocofactor usage. Class I RNRs, found in eukaryotes, bacteria, and bacteriophage, use a diiron-tyrosyl radical. Class II RNRs, found in bacteria, bacteriophage, algae and archaea, use coenzyme B12 (adenosylcobalamin, AdoCbl). Class III RNRs, found in anaerobic bacteria, bacteriophage, and archaea, use an FeS cluster and S-adenosylmethionine to generate a glycyl radical. Many organisms have more than one class of RNR present in their genomes. All three RNRs have a ten-stranded alpha-beta barrel domain that is structurally similar to the domain of PFL (pyruvate formate lyase). Class II RNRs are found in bacteria that can live under both aerobic and anaerobic conditions. Many, bu
Probab=100.00 E-value=2.7e-127 Score=1088.52 Aligned_cols=459 Identities=34% Similarity=0.548 Sum_probs=436.0
Q ss_pred HHHHHHHhcCceecCCccccccCC-CCCCCcccccccccCCChHHHHHHHHHHHHHHHhcCCcceeeeeecCCCCcccCC
Q 003575 187 LKTYHLMSQHWFTHATPTLFNAGT-PQPQLSSCFLLCMKDDSIEGIYDTLKKCAIISKSAGGIGLSIHNIRASGSYIHGT 265 (810)
Q Consensus 187 ~~~y~~ls~~~~~~atP~l~naGt-~~~~lsSCfl~~~~~DS~~~I~~~~~~~a~isk~ggGiG~~~s~iR~~Gs~I~g~ 265 (810)
++||++|++++|+|+||+|+|+|+ +++||+||||++++|||+++|+++++++++++|+|||||+|+|.|||+|++|+|+
T Consensus 2 ~~~~~~l~~~~~~p~tP~l~naG~~~~~~lssCfv~~~~dds~~~I~~~~~~~a~l~k~gGGvG~~~s~iRp~G~~i~~~ 81 (464)
T cd02888 2 DEFFYLLLSQGFIPNSPTLMNAGTGELGQLSACFVLPVEDDSIEGIFDALKEAALIFKRGGGVGYNFSRLRPKGDIVKST 81 (464)
T ss_pred hHHHHHHHcCCeecCChHhhcCCCCCCCCceeeEecCCCCCCHHHHHHHHHHHHHHHhcCCeEEeeccccCCCCCcccCC
Confidence 689999999999999999999999 8999999999998555999999999999999999999999999999999999999
Q ss_pred CCCCCCcccHHHHHHHHHHHHhhCCCcccCceEEeecCCcccHHHHHHhhhhcCcccccccccceecccCHHHHHHHhcC
Q 003575 266 NGSSNGIVPMLQVFNDTARYVDQGGGKRKGAFAIYLEPWHADIFEFLDLRKNQGKEECRARDLFYALWVPDLFMERVRDD 345 (810)
Q Consensus 266 ~g~ssG~vp~lk~~~~~~~~v~qgG~~Rrga~~~yl~~wH~DI~~Fl~~K~~~g~e~~r~~~l~~sv~ipD~Fm~rv~~~ 345 (810)
+|.||||+|||++||+++.+++||| +||||.|+||++|||||++||++|++.+++ .|++++|+||+|||+||++|++|
T Consensus 82 ~g~ssG~v~f~~~~d~~~~~i~qgg-~RrgA~~~~l~~~HpDi~~Fi~~K~~~~~~-~~~~~~n~sv~i~D~Fm~~v~~~ 159 (464)
T cd02888 82 GGVASGPVSFMRVFDAATGVIKQGG-TRRGANMGVLDVDHPDIEEFIDAKMKEEKT-VVLQNFNISVAVTDAFMEAVEND 159 (464)
T ss_pred CCCCCChHhHHHHHHHHHHHHHhCC-cccceeEEEEcCCCccHHHHHHHccccCcc-cccccceeEEEeCHHHHHHHHcC
Confidence 9999999999999999999999998 899999999999999999999999988764 57899999999999999999999
Q ss_pred CceEEecCCCCCCchhhhhhhHHHHHHHHHHcCceeEEEeHHHHHHHHHHHHHhhCCceeEechhhhhhCCCCCCCeEEe
Q 003575 346 GKWSLFCPSDASGLADSWGIEFEHLYSQYEEEGRAKMVISARKLWFEILNSQIETGTPYMLFKDSCNRKSNQQNLGTIKS 425 (810)
Q Consensus 346 ~~w~Lf~P~~~~~L~~~~g~eF~~~Y~~~e~~~~~~~~v~Ar~l~~~I~~~~~etG~P~i~f~D~~Nr~~~~~~~g~I~~ 425 (810)
++|+||+|+++ .++..+++|+||+||++|++++|+||+|||+|+|++|+++|+++.|+|.+
T Consensus 160 ~~w~L~~p~~~-------------------~~~~~~~~v~Arel~~~i~~~~~~tG~Pgi~f~D~~N~~~~~~~~~~i~~ 220 (464)
T cd02888 160 EPWELRNPREP-------------------DTGKVYRTVPARELWDKIVEAAWDSADPGVLFIDTINRWNPLPGLGRINA 220 (464)
T ss_pred CCeEeeCcccc-------------------CCCceeeEeeHHHHHHHHHHHHHHHCCCeEEEhHHHHhhCCccccCceee
Confidence 99999999864 24566899999999999999999999999999999999999999999999
Q ss_pred ecCCccccccCCCCCceeeeccccCchhhhhccCCccccccccccccCCCCCccCCHHHHHHHHHHHHHHHHHHHhcCCC
Q 003575 426 SNLCTEIVEFSSPEETAVCNLASIALPRYVREKGVPVQSNVSKLVGSRDSKNRLFDFERLAEVTKIITENLNKIIDVNHY 505 (810)
Q Consensus 426 sNlC~EI~~~~~~~e~~~CNL~SInL~~~v~~~~~~~~~~~~~~~g~~~~~~~~fD~~~l~~~v~~avr~LD~vId~~~~ 505 (810)
||||+||+|++ .++|||+||||++|++++ ..+..|||+.|+++|+++||+||+|||.+.|
T Consensus 221 sNpC~Ei~l~~----~~~CnL~SiNL~~fv~~~----------------~~~~~fD~~~l~~~v~~avr~LD~vid~~~~ 280 (464)
T cd02888 221 TNPCGEQPLLP----YESCNLGSINLSKFVKNP----------------FGGASFDFERLREAVRLAVRFLDNVIDVNRY 280 (464)
T ss_pred ccCCcccccCC----CCcccchhhhHHHHhccc----------------CcccccCHHHHHHHHHHHHHHHHHHHhcccC
Confidence 99999999974 469999999999999753 1124699999999999999999999999999
Q ss_pred ChHHHHHHhhccCCceeecchHHHHHHHcCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCCCCCCccccCcc
Q 003575 506 PIETTRRSNLRHRPIGIGIQGLADTFILLGLPFESPEAQQLNKDIFETIYYHALKASAELAVKDGPYETYFGSPMSKGIL 585 (810)
Q Consensus 506 p~~~~~~~~~~~R~iGlGv~Glad~L~~~gi~y~S~ea~~l~~~i~e~i~~~a~~aS~eLAke~G~~~~f~~S~~~~G~l 585 (810)
|+|++++.++++|+||||+|||||+|+++|++|+|+||++++++|||+|+|+|+++|++||+|+|+||.|++|+|++|++
T Consensus 281 p~~~~~~~~~~~R~iGlG~~Glad~L~~~gi~y~S~ea~~~~~~i~~~i~~~a~~aS~~LA~e~G~fp~f~~s~~~~g~~ 360 (464)
T cd02888 281 PLPEIAEETKATRRIGLGVMGLADMLIKLGIPYDSEEARELAERIMSFIRDAAYRASAELAKERGPFPLFDASRYLMLKV 360 (464)
T ss_pred ChHHHHHHhhccCceeecHHHHHHHHHHcCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCcCCCcCcChhhcccc
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ccccccCCCCCcccHHHHHHHHHhcCccccceeccCCCcchhhhcCCCccccccccceeeEEcccCceEEeCHHHHHHHH
Q 003575 586 QVDMWNITPSDRWDWSSLREMISKNGVRNSLLVAPMPTASTSQILGNNECFEPYTSNIYTRRVLSGEFIVVNKHLLKDLT 665 (810)
Q Consensus 586 ~~d~~~~~~~~~~dW~~Lr~~i~~~G~RNs~l~AiaPT~stS~i~g~s~gieP~~s~~y~r~~~~g~~~~vn~~l~~~l~ 665 (810)
+++ ...+|++||++|++||+|||+++|||||||||+|+|+|+||||+|
T Consensus 361 ~~~-------~~~~w~~l~~~i~~~G~RNs~l~aiAPTgs~S~i~g~s~gieP~~------------------------- 408 (464)
T cd02888 361 IVN-------AKELPDDVLEEIEKYGIRNAHLTTIAPTGTISLIAGTSSGIEPIF------------------------- 408 (464)
T ss_pred hhc-------chhcHHHHHHHHHHhCcchhceeeeCCcHHHHHHhCCCCCcCCCC-------------------------
Confidence 865 235799999999999999999999999999999999999999997
Q ss_pred HcCCChHHHHHHHHhcCCccccccCCchHHHhhccccccCChHHHHHHHHHhCcccccccceeEeeCC-CChHHHHHHHH
Q 003575 666 ELGLWSHALKTKIIYENGSVSKISEIPEELKAIYKTVWEIKQKTLVDMAADRGCYIDQSQSLNIHMEQ-PDHGKLTSLHF 744 (810)
Q Consensus 666 ~~g~~~~~~~~~i~~~~Gsv~~~~~lp~~~k~~y~tA~ei~~~~~i~~~a~~Q~~vDqs~S~nl~~~~-~~~~~l~~~~~ 744 (810)
+|++||+|||++|||||||||+|+|+++ .+.++|.++|+
T Consensus 409 ----------------------------------------~~~~~i~~~a~~Q~~iDqsiS~tin~~~~~t~~d~~~~y~ 448 (464)
T cd02888 409 ----------------------------------------SPEDHVRMQAALQPWVDGAISKTINLPNDATVEDVEAVYL 448 (464)
T ss_pred ----------------------------------------CHHHHHHHHHHHhccchhhhcceeecCCCCCHHHHHHHHH
Confidence 7899999999999999999999999986 58999999999
Q ss_pred HHHHcCCceEEEEe
Q 003575 745 YAWSKGMKTGMYYL 758 (810)
Q Consensus 745 ~Awk~GlKt~~yY~ 758 (810)
+||++||||+|||.
T Consensus 449 ~aw~~G~K~~t~yR 462 (464)
T cd02888 449 LAWKLGLKGITVYR 462 (464)
T ss_pred HHHHhCCCEEEEeC
Confidence 99999999999993
No 28
>PRK08332 ribonucleotide-diphosphate reductase subunit alpha; Validated
Probab=100.00 E-value=1.1e-124 Score=1158.00 Aligned_cols=484 Identities=28% Similarity=0.444 Sum_probs=440.0
Q ss_pred HHHHHHHhcCCcceeeeeecCCCCcccCCCCCCCCcccHHHHHHHHHHHHhhCCCcccCceEEeecCCcccHHHHHHhhh
Q 003575 237 KCAIISKSAGGIGLSIHNIRASGSYIHGTNGSSNGIVPMLQVFNDTARYVDQGGGKRKGAFAIYLEPWHADIFEFLDLRK 316 (810)
Q Consensus 237 ~~a~isk~ggGiG~~~s~iR~~Gs~I~g~~g~ssG~vp~lk~~~~~~~~v~qgG~~Rrga~~~yl~~wH~DI~~Fl~~K~ 316 (810)
++++++|. |+|+|||+|||+|++|+|++|.||||||||++||+++++|+||| +||||+|+||++|||||++||++|+
T Consensus 747 E~~~~~k~--G~G~~fS~LRp~Gs~I~~t~g~asGpvsfm~lfd~~~~~v~QGG-~RRGA~m~yL~~~HPDI~eFI~aK~ 823 (1740)
T PRK08332 747 ENGMIFVH--NTGLNFSKLRPEGDIVGTTTGAASGPVSFMHLIDAVSDVIKQGG-VRRGANMGILEIWHPDIEKFIHAKE 823 (1740)
T ss_pred hheEEeec--cEEecccccCCCCCcccCCCCCCCChHHHHHHHHHHHHHHHhcC-CCcCCeEEEEcCCCccHHHHHHhhh
Confidence 44555555 99999999999999999999999999999999999999999999 8999999999999999999999997
Q ss_pred hc-CcccccccccceecccCHHHHHHHhcCCceEEecCCCCCCchhhhhhhHHHHHHHHHHcCceeEEEeHHHHHHHHHH
Q 003575 317 NQ-GKEECRARDLFYALWVPDLFMERVRDDGKWSLFCPSDASGLADSWGIEFEHLYSQYEEEGRAKMVISARKLWFEILN 395 (810)
Q Consensus 317 ~~-g~e~~r~~~l~~sv~ipD~Fm~rv~~~~~w~Lf~P~~~~~L~~~~g~eF~~~Y~~~e~~~~~~~~v~Ar~l~~~I~~ 395 (810)
.+ |+. +.+++|++|.|+|+||++|++|++|+||+|++ |...++|+||+||.+|++
T Consensus 824 ~~~g~~--~l~~fNlsv~v~D~FMeaV~~d~~w~L~~P~~----------------------g~~~~~v~AreLw~~I~~ 879 (1740)
T PRK08332 824 KNIGTN--VLSNFNISVGIWEDFWEALKEGKKYPLINPRT----------------------GEVVKEIDPKSLFEELAY 879 (1740)
T ss_pred ccCCcc--hhccccccccchHHHHHHHHcCCCeEeecCCC----------------------CceeeEEcHHHHHHHHHH
Confidence 54 433 36788888989999999999999999999974 456789999999999999
Q ss_pred HHHhhCCceeEechhhhhhCCCCC--CCeEEeecCCcc----------------c-------------------------
Q 003575 396 SQIETGTPYMLFKDSCNRKSNQQN--LGTIKSSNLCTE----------------I------------------------- 432 (810)
Q Consensus 396 ~~~etG~P~i~f~D~~Nr~~~~~~--~g~I~~sNlC~E----------------I------------------------- 432 (810)
++|+||+|||+|+|++|+.||+++ .|+|.+||||.- .
T Consensus 880 ~a~etGePgilF~D~iN~~n~~~~~~~g~I~aSNpCVtgdt~v~T~~G~~~~~~l~~~~~~~g~~~~~~~~g~~~~g~~~ 959 (1740)
T PRK08332 880 MAWAKADPGVIFFDVINRRNVLKEAKGGPIRATNPCVVGDTRILTPEGYIKAEELFSLAKERGKKEAVAVEGIAEEGEPY 959 (1740)
T ss_pred HHHHhCCCcEEEhhhhhhhCCCccccCCeEEeecCCcCCCceeecccchHHHHHHHHHHHhcCcceeeeeccccccCCcc
Confidence 999999999999999999999887 589999999951 0
Q ss_pred ------ccc-----------------------------------------------------------------------
Q 003575 433 ------VEF----------------------------------------------------------------------- 435 (810)
Q Consensus 433 ------~~~----------------------------------------------------------------------- 435 (810)
+.+
T Consensus 960 ~~~~e~v~~g~~~~~~~~~~g~~~~~~~~~~~~~~~~~tG~k~v~rl~T~~G~~i~~T~dH~~lt~~gW~~~~eLk~GD~ 1039 (1740)
T PRK08332 960 AYSVEILLPGEEEVKYETVHGKALAIADPVAVPAYVWKVGKKKVARVRTKEGYEITATLDHKLMTPEGWKEVGDLKPGDK 1039 (1740)
T ss_pred cccceeeccccccccccccCCcccccccccccccceeecCcceEEEEEecCCcEEEecCCceeeecccCEEHhHcCCCCE
Confidence 000
Q ss_pred ----------------------------------------------CC--------------------------------
Q 003575 436 ----------------------------------------------SS-------------------------------- 437 (810)
Q Consensus 436 ----------------------------------------------~~-------------------------------- 437 (810)
..
T Consensus 1040 i~lp~~~~~~~~g~~~~~e~~a~LLG~LiGDGsl~~~~k~~~~~~~~~~ee~va~~v~~~l~~~fG~~~~~~r~~~~~~i 1119 (1740)
T PRK08332 1040 ILLPRFEVEEDFGSESIGEDLAFVLGWFIGDGYLNVNDKRAWFYFNAEKEEEIAWKIREILAKHFGIKAEPHRYGNQIKL 1119 (1740)
T ss_pred EEecCccCccccCccccchHHHHHHHHhhcCceeecCCceeEEEecCcchHHHHHHHHHHHHHHhCCcccccccccceee
Confidence 00
Q ss_pred ---------------------C----------------------------------------------------------
Q 003575 438 ---------------------P---------------------------------------------------------- 438 (810)
Q Consensus 438 ---------------------~---------------------------------------------------------- 438 (810)
|
T Consensus 1120 ~~r~~~~~~Lk~l~~~~eKrIPe~vfrl~~~~~~aFLrGLFDaDG~V~~~~~I~lsS~s~~Ll~dVq~LLlrLGI~S~I~ 1199 (1740)
T PRK08332 1120 GVRGEAYRWLESIVKTNEKRVPEIVYRLKPREIAAFLRGLFSADGYVDNDMAIRLTSKSRELLRDVQDLLLLFGILSKIY 1199 (1740)
T ss_pred cccHHHHHHHHHhccccccCCCHHHHhCCHHHHHHHHHHHcccCCccccCceEEEEeCCHHHHHHHHHHHHhCCCeeEEE
Confidence 0
Q ss_pred --------------------------------------------------------------------------------
Q 003575 439 -------------------------------------------------------------------------------- 438 (810)
Q Consensus 439 -------------------------------------------------------------------------------- 438 (810)
T Consensus 1200 ~~~~~~~~~l~d~~gg~k~y~~~~~y~LiIsg~~~~~F~e~IGF~~~K~~rl~l~~~~~~~~~~~V~~ve~~G~E~VYd~ 1279 (1740)
T PRK08332 1200 ERPYKSEFKYTTKDGEERTYRAEGYYELVIANYSRKLFAEKIGFEGYKMEKLSLQKTKIDEPIVTVESVEVLGEEIVYDF 1279 (1740)
T ss_pred eccccccccccCCCCcccccccCceEEEEEcchHHHHHHHHhccchhhHHHHhhcccccccceeEEEEeeecCccceeec
Confidence
Q ss_pred -----------------------CCceeeeccccCchhhhhccCCccccccccccccCCCCCccCCHHHHHHHHHHHHHH
Q 003575 439 -----------------------EETAVCNLASIALPRYVREKGVPVQSNVSKLVGSRDSKNRLFDFERLAEVTKIITEN 495 (810)
Q Consensus 439 -----------------------~e~~~CNL~SInL~~~v~~~~~~~~~~~~~~~g~~~~~~~~fD~~~l~~~v~~avr~ 495 (810)
.++++|||+||||++||.++ +.+...|||++|+++|+++||+
T Consensus 1280 t~p~~h~f~~nG~~~~~~GEqpL~py~sCNLgSINL~~fV~~~---------------~~g~~~fD~e~l~~~V~~avR~ 1344 (1740)
T PRK08332 1280 TVPEHHSYISNGFMSHNCGEEPLYEYESCNLASINLAKFVKYD---------------ENGKPYFDWDEYAYVIQKVAKY 1344 (1740)
T ss_pred CCCccccccccceEecCCCccCCCCCCeeecHHHHHHHHhccc---------------ccCccccCHHHHHHHHHHHHHH
Confidence 01357899999999988642 1233579999999999999999
Q ss_pred HHHHHhcCCCChHHHHHHhhccCCceeecchHHHHHHHcCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCCC
Q 003575 496 LNKIIDVNHYPIETTRRSNLRHRPIGIGIQGLADTFILLGLPFESPEAQQLNKDIFETIYYHALKASAELAVKDGPYETY 575 (810)
Q Consensus 496 LD~vId~~~~p~~~~~~~~~~~R~iGlGv~Glad~L~~~gi~y~S~ea~~l~~~i~e~i~~~a~~aS~eLAke~G~~~~f 575 (810)
||||||++.||+|+++++++++|+||||+|||||+|+++|++|+|+||++|+++||+.|+++|+++|++||+|+|+||.|
T Consensus 1345 LDnVID~~~yPlp~i~~~~~~~R~IGLGvmGLad~L~~lGI~YdSeEA~~~~~~I~e~i~~~A~~aS~eLAkErG~FP~f 1424 (1740)
T PRK08332 1345 LDNAIDVNKFPLPEIDYNTKLTRRIGVGMMGLADALFKLGIPYNSEEGFKFMRKVTEYLTFYAYKYSVEAAKKRGTFPLY 1424 (1740)
T ss_pred HHHHHHhcCCccHHHHHHhhhcCCcccchhHHHHHHHHcCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCCc
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCccccCccccccccCCCCCcccHHHHHHHHHhcCccccceeccCCCcchhhhcCCCccccccccceeeEEcccCceEE
Q 003575 576 FGSPMSKGILQVDMWNITPSDRWDWSSLREMISKNGVRNSLLVAPMPTASTSQILGNNECFEPYTSNIYTRRVLSGEFIV 655 (810)
Q Consensus 576 ~~S~~~~G~l~~d~~~~~~~~~~dW~~Lr~~i~~~G~RNs~l~AiaPT~stS~i~g~s~gieP~~s~~y~r~~~~g~~~~ 655 (810)
++|+|++|+++++.|........+|++|+++|+++|+|||+++|||||||||+|+|+|+||||+|+++|.|++..|++.+
T Consensus 1425 e~S~y~~G~l~~~~~~~~~~~~~~W~~L~e~I~k~GlRNs~ltaIAPTGSiSliag~SsGIEPifA~~y~R~v~~G~~~~ 1504 (1740)
T PRK08332 1425 EKTEYPKGELPVEGFYHPEIWNLPWDKLVEEIKKYGVRNAMVTTCPPTGSVSMIADTSSGIEPIFALVYKKSVTVGEFYY 1504 (1740)
T ss_pred ccCchhcccccccccccchhccccHHHHHHHHHHhCcchheeeccCCCcchhhhcCCCCccccchhheeEEeccCceEEE
Confidence 99999999999886643322345899999999999999999999999999999999999999999999999999999999
Q ss_pred eCHHHHHHHHHcCCChHHHHHHHHhcCCccccccCCchHHHhhccccccCChHHHHHHHHHhCcccccccceeEeeCC-C
Q 003575 656 VNKHLLKDLTELGLWSHALKTKIIYENGSVSKISEIPEELKAIYKTVWEIKQKTLVDMAADRGCYIDQSQSLNIHMEQ-P 734 (810)
Q Consensus 656 vn~~l~~~l~~~g~~~~~~~~~i~~~~Gsv~~~~~lp~~~k~~y~tA~ei~~~~~i~~~a~~Q~~vDqs~S~nl~~~~-~ 734 (810)
+|++|.+.|++.|+|+++++.+|..+.|++|+++.+|++++++|+||+||+|.+||+|||++|||||||||+|||+|+ .
T Consensus 1505 ~np~~~~~l~~~g~~~~e~~~~I~~~~gsvq~~~~lpe~~~~~F~TA~DI~~~~hI~mqAa~Qk~VDqaISKTiNlP~da 1584 (1740)
T PRK08332 1505 VDPVFEAELKKRGLYSEELLKKISDNYGSVQGLEEIPEDMQRVFVTALDIHWLDHILAQANIQMWLTDSASKTINMINEA 1584 (1740)
T ss_pred ecHHHHHHHHHcCCCcHHHHHHHHHhCCCccCcccCChhHhhhcccHhcCCHHHHHHHHHHHhhhccccccceeecCCCC
Confidence 999999999999999999999998889999999999999999999999999999999999999999999999999996 6
Q ss_pred ChHHHHHHHHHHHHcCCceEEEEecCcc
Q 003575 735 DHGKLTSLHFYAWSKGMKTGMYYLRTRA 762 (810)
Q Consensus 735 ~~~~l~~~~~~Awk~GlKt~~yY~r~~~ 762 (810)
+.++|.++|++||++||||+|||.-..+
T Consensus 1585 t~eDv~~iY~~Awk~GlKGiTvYRdgs~ 1612 (1740)
T PRK08332 1585 TVEDVKAAYLIAHFLGCKGVTVYRDGSL 1612 (1740)
T ss_pred CHHHHHHHHHHHHHcCCCEEEEEcCCCc
Confidence 8999999999999999999999843333
No 29
>COG0209 NrdA Ribonucleotide reductase, alpha subunit [Nucleotide transport and metabolism]
Probab=100.00 E-value=1.5e-124 Score=1107.85 Aligned_cols=623 Identities=38% Similarity=0.639 Sum_probs=561.2
Q ss_pred HHHhhcCCCCCHHHHHHHHHHHHHhhcc-CCCChHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHhhhhcCccccCcchHH
Q 003575 42 KVCAGVYKGVTTTQLDELAAETAAAMTV-NHPDYALLAGRVAVSNLHKITKNSFSETIKDMYNYYNKRSGKKASLVADDV 120 (810)
Q Consensus 42 ~~~~~~~~~itt~ei~~~~~~~a~~~~~-~~p~y~~lA~rl~~~~l~k~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~ 120 (810)
+...+++++++ +.+.++.++..+.. .+|+|+.+|+|++++.+++++...+.- ...++..+. ..+..+.++..+
T Consensus 4 ~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~~-~~~~~~~~~--~~~~~~~~~~~~ 77 (651)
T COG0209 4 RTVIGFYDGIT---IAENLILAALTVIEEDDPDVQRLAARLAGSDLRKEAVRQFGR-FDVLDEKVF--ALVANGYYDQRL 77 (651)
T ss_pred ccccchhcchh---HHHHHhhhhhhhcCccCccHHHHHHHHHHHHHHHHHhccccc-hhhhhhHHH--HHHhhhhhHHHH
Confidence 44567889988 66666666666666 699999999999999999999866552 233433321 234456777777
Q ss_pred HH-HHHhcHHHHHhhhcccccCCCChhhHHHHHHhhcccc-CCc-ccCCHHHHHHHHHhhhccCC-----hHHHHHHHHH
Q 003575 121 YE-IIMKNAACLDGAIIYDRDFDFDYFGFKTLERSYLLKM-DSR-VVERPQHMLMRVSVGIHKDD-----TDSALKTYHL 192 (810)
Q Consensus 121 ~~-~~~~~~~~l~~~i~~~rd~~~~y~g~~~l~~~Yllk~-~g~-~~E~pq~~~~RVA~~l~~~~-----~~~~~~~y~~ 192 (810)
++ +..++++.+...++++||..|+|+|+++|+++|++|. +++ ++|+||++|||||+.++..+ ++++++||++
T Consensus 78 ~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~l~~rYl~~~~~~~~~~E~~~~~~~~vA~~la~~e~~~~~~~~a~~~y~~ 157 (651)
T COG0209 78 LRLYSREDLDDLNKKILLERDRQFSYAAAKVLYSRYLLKDEDGSEILELPQDLFMRVALLLAQNEAPERRLEWAKEFYDL 157 (651)
T ss_pred HHhhhhhHHHHHHHhhhhcchhhhhHHHHHHHHHhhhcccccccccccCHHHHHHHHHHHhccCCccchhhHHHHHHHHH
Confidence 75 5666899999999999999999999999999999994 444 79999999999999999754 4699999999
Q ss_pred HhcCceecCCccccccCCCCCCCcccccccccCCChHHHHHHHHHHHHHHHhcCCcceeeeeecCCCCcccCCCCCCCCc
Q 003575 193 MSQHWFTHATPTLFNAGTPQPQLSSCFLLCMKDDSIEGIYDTLKKCAIISKSAGGIGLSIHNIRASGSYIHGTNGSSNGI 272 (810)
Q Consensus 193 ls~~~~~~atP~l~naGt~~~~lsSCfl~~~~~DS~~~I~~~~~~~a~isk~ggGiG~~~s~iR~~Gs~I~g~~g~ssG~ 272 (810)
|++++|+|+||||+|+|++++||+||||+++.||+ ||+
T Consensus 158 ~~~~~~~patPtl~n~~~~~~qlssCfv~~~~dd~------------------------------------------sG~ 195 (651)
T COG0209 158 MSSLRFMPATPTLLNGGTPRGQLSSCFVLPVEDDS------------------------------------------SGV 195 (651)
T ss_pred HhcCeeecCCcceecCCCCCCceeeeEEecccCCC------------------------------------------CCc
Confidence 99999999999999999999999999999976777 899
Q ss_pred ccHHHHHHHHHHHHhhCCCcccCceEEeecCCcccHHHHHHhhhhcCcccccccccceecccCHHHHHHHhcCCceEEec
Q 003575 273 VPMLQVFNDTARYVDQGGGKRKGAFAIYLEPWHADIFEFLDLRKNQGKEECRARDLFYALWVPDLFMERVRDDGKWSLFC 352 (810)
Q Consensus 273 vp~lk~~~~~~~~v~qgG~~Rrga~~~yl~~wH~DI~~Fl~~K~~~g~e~~r~~~l~~sv~ipD~Fm~rv~~~~~w~Lf~ 352 (810)
|||||+||+++.+|+||| +|+||.|+||++|||||++||++|+++|++.+|.++++++++|||+||++++++++|+||+
T Consensus 196 i~~~k~~d~~~~~i~QgG-~R~GA~~v~L~~~HpDi~~fl~~k~~~gde~~r~~~~~~~~~i~d~~~~~~~~~~~~~l~~ 274 (651)
T COG0209 196 VPFMKLLDDAFDAINQGG-VRRGAQAVYLDIWHPDIEEFLDAKRNNGDEILRAFDISVGVWIPDLFMKRAKEGEDWTLFS 274 (651)
T ss_pred hhHHHHHHHHHHHHhhcC-cCCCCeEEeecCCCccHHHHHHHHhhccccceeeeccccceeecHHHHHHHhcCCceEeeC
Confidence 999999999999999999 8999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCCCCchhhhhhhHHHHHHHHHH-cCceeEEEeHHHHHHHHHHHHHhhCCceeEechhhhhhCCCC-CCCeEEeecCCc
Q 003575 353 PSDASGLADSWGIEFEHLYSQYEE-EGRAKMVISARKLWFEILNSQIETGTPYMLFKDSCNRKSNQQ-NLGTIKSSNLCT 430 (810)
Q Consensus 353 P~~~~~L~~~~g~eF~~~Y~~~e~-~~~~~~~v~Ar~l~~~I~~~~~etG~P~i~f~D~~Nr~~~~~-~~g~I~~sNlC~ 430 (810)
|++.-++.+.||++|++ |.+++. ++..+++|+||+||.+|++.+|+||+||++|+|++|+++|.. +.|+|++||||+
T Consensus 275 P~~~~~~~~~~~~~~~~-y~~~~~~~~~~~~~v~Ar~l~~~i~~~~~esG~P~l~f~D~~N~~~~~~~~~g~I~~sNlC~ 353 (651)
T COG0209 275 PRDGYEAPDVYGAEFEE-YAEYEADPGIRKKRIKARELFDKLAEAAFETGDPYLIFVDTLNRRNPNAEGGGAIRASNLCS 353 (651)
T ss_pred CcccccccccchhhHHH-HHHHhcCCCeeeeeEcHHHHHHHHHHHHHhcCCCeeEecccccCCCCCcccCceeeccccch
Confidence 99866789999999999 999987 467889999999999999999999999999999999776654 466999999999
Q ss_pred cccccC-------CCCCceeeeccccCchhhhhccCCccccccccccccCCCCCccCCHHHHHHHHHHHHHHHHHHHhcC
Q 003575 431 EIVEFS-------SPEETAVCNLASIALPRYVREKGVPVQSNVSKLVGSRDSKNRLFDFERLAEVTKIITENLNKIIDVN 503 (810)
Q Consensus 431 EI~~~~-------~~~e~~~CNL~SInL~~~v~~~~~~~~~~~~~~~g~~~~~~~~fD~~~l~~~v~~avr~LD~vId~~ 503 (810)
||+|++ ..+++++|||+||||.+++.. + +.|+++++++||+||+|||++
T Consensus 354 Ei~~~~~~~~~~~~~~~~~~CNL~siNl~~~~~~-----------------------~-~~~~~~v~~~vr~Ld~vid~~ 409 (651)
T COG0209 354 EILQRTKPLSLEQPLGEDASCNLGSINLAKFVKY-----------------------G-DGLAELVAVAVRALDNVIDLN 409 (651)
T ss_pred hhhccccccccccCCCCceeeechhhhHHHHHhc-----------------------c-hhHHHHHHHHHHHHHHHHHhc
Confidence 999887 456889999999999999852 2 349999999999999999999
Q ss_pred CCChHHHHHHhhccCCceeecchHHHHHHHcCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCCCCCCccccC
Q 003575 504 HYPIETTRRSNLRHRPIGIGIQGLADTFILLGLPFESPEAQQLNKDIFETIYYHALKASAELAVKDGPYETYFGSPMSKG 583 (810)
Q Consensus 504 ~~p~~~~~~~~~~~R~iGlGv~Glad~L~~~gi~y~S~ea~~l~~~i~e~i~~~a~~aS~eLAke~G~~~~f~~S~~~~G 583 (810)
.||+|+++++|.++|+||||+|||||+|+++|++|+|+||++|++++||.|+++|+++|++||+|+|+|+.|++|.|++|
T Consensus 410 ~~p~~~~~~~n~~~R~iGlGvmgl~~~La~~~i~y~S~ea~~~~~~~~e~i~~~a~~aS~elA~e~G~~~~f~~s~~~~g 489 (651)
T COG0209 410 PYPVPEAERANAESRAIGLGVMGLADLLAQLGIPYGSEEALKFNDRLFEYIAYYALKASAELAKERGPYPYFEGSRWARG 489 (651)
T ss_pred CCCCHHHHHHhhhcCccccchhhHHHHHHhCCCCcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCCCCCChhhcc
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ccccccccCCCCCcccHHHHHHHHHhcCccccceeccCCCcchhhhcCCCccccccccceeeEEcccCceEEeCHHHHHH
Q 003575 584 ILQVDMWNITPSDRWDWSSLREMISKNGVRNSLLVAPMPTASTSQILGNNECFEPYTSNIYTRRVLSGEFIVVNKHLLKD 663 (810)
Q Consensus 584 ~l~~d~~~~~~~~~~dW~~Lr~~i~~~G~RNs~l~AiaPT~stS~i~g~s~gieP~~s~~y~r~~~~g~~~~vn~~l~~~ 663 (810)
.++.+.+...... .+|+.|++++++||+|||+++|||||||||+|+|+|+||||+|+++|.|....|.+.++++++.++
T Consensus 490 ~~~~~~~~~~~~~-~~w~~l~~~v~~~G~rns~~~aiaPtgsiS~i~~~t~~IeP~~~~~~~r~~~~g~~~~~~~~l~~~ 568 (651)
T COG0209 490 ILPIDYPRLFGIT-EDWEKLREDIKKHGLRNSYLTAIAPTGSISYIAGTTSGIEPIFALVYFRETKGGRFYYVVPPLFED 568 (651)
T ss_pred ccccchhhhcccc-ccHHHHHHHHHHhCcccccceeeCCccchhHhhCCCCCcCcChhheeeEecccceEEEeCcHHHHH
Confidence 9987653322112 899999999999999999999999999999999999999999999999988899999999998766
Q ss_pred HHHcCCChHHHHHHHHhcCCccccccCCchHHHhhccccccCChHHHHHHHHHhCcccccccceeEeeCC-CChHHHHHH
Q 003575 664 LTELGLWSHALKTKIIYENGSVSKISEIPEELKAIYKTVWEIKQKTLVDMAADRGCYIDQSQSLNIHMEQ-PDHGKLTSL 742 (810)
Q Consensus 664 l~~~g~~~~~~~~~i~~~~Gsv~~~~~lp~~~k~~y~tA~ei~~~~~i~~~a~~Q~~vDqs~S~nl~~~~-~~~~~l~~~ 742 (810)
+.. .|..|+||+|.++|+|+|++|+|||||||+|||+++ .+.+++..+
T Consensus 569 ~~~-------------------------------~~~~a~~i~~~~~i~~~a~~q~~iDq~iS~tl~~~~~~~~~d~~~~ 617 (651)
T COG0209 569 LLA-------------------------------YYGLAYEIDPLWHIDMQAAAQRWIDQGISKTLNLPNTATTKDLNKA 617 (651)
T ss_pred HHH-------------------------------hhhhhhccChHHHHHHHHHhhcccccceeeeecCCCCCCHHHHHHH
Confidence 543 344499999999999999999999999999999995 788899999
Q ss_pred HHHHHHcCCceEEEEecCccccccccccc
Q 003575 743 HFYAWSKGMKTGMYYLRTRAAADAIKFTV 771 (810)
Q Consensus 743 ~~~Awk~GlKt~~yY~r~~~~~~~~~~~~ 771 (810)
|++||++|+|| +||+|+++..+..++.+
T Consensus 618 ~~~Aw~~g~K~-~yY~~~~~~~~~~~~~~ 645 (651)
T COG0209 618 YLYAWKLGLKT-TYYRRTSQAAQVLTVVL 645 (651)
T ss_pred HHHHHHcCCce-EEEecCccccccccccc
Confidence 99999999999 99999999988876654
No 30
>PRK07562 ribonucleotide-diphosphate reductase subunit alpha; Validated
Probab=100.00 E-value=6.4e-123 Score=1105.48 Aligned_cols=558 Identities=22% Similarity=0.398 Sum_probs=495.4
Q ss_pred CHHHHHHHHHhhhcc--------CChHHHHHHHH----HHhcCceecCCccccccCC-----------------------
Q 003575 166 RPQHMLMRVSVGIHK--------DDTDSALKTYH----LMSQHWFTHATPTLFNAGT----------------------- 210 (810)
Q Consensus 166 ~pq~~~~RVA~~l~~--------~~~~~~~~~y~----~ls~~~~~~atP~l~naGt----------------------- 210 (810)
+-.++|-|+|..... ...+.++.||+ +|.+|++.|+||+|||.|+
T Consensus 105 s~~q~~~r~~~~~~~~g~~~gyf~~~~da~~f~de~~~~l~~q~~apnSP~wfN~Gl~~~yg~~~~~~~~~~~d~~~~~~ 184 (1220)
T PRK07562 105 SAKQVFDRLAGCWTYWGWKGGYFDSEEDARAFYDELRYMLATQMVAPNSPQWFNTGLHWAYGIDGPGQGHFYVDPKTGKL 184 (1220)
T ss_pred cHHHHHHHHHHHHHHHHhhCCccCCHHHHHHHHHHHHHHHHhcCcCCCCcceeeccccccccccCccccccccccccccc
Confidence 567899999988652 24567888999 9999999999999999997
Q ss_pred -------CCCCCcccccccccCCChH---HHHHHHHHHHHHHHhcCCcceeeeeecCCCCcccCCCCCCCCcccHHHHHH
Q 003575 211 -------PQPQLSSCFLLCMKDDSIE---GIYDTLKKCAIISKSAGGIGLSIHNIRASGSYIHGTNGSSNGIVPMLQVFN 280 (810)
Q Consensus 211 -------~~~~lsSCfl~~~~~DS~~---~I~~~~~~~a~isk~ggGiG~~~s~iR~~Gs~I~g~~g~ssG~vp~lk~~~ 280 (810)
.++|++||||+++ +||++ ||+++++++|+|+|+|||+|+|||+|||+|++|+| +|+|||||||||+||
T Consensus 185 ~~~~~~y~~pQlsSCFI~~V-~Dsl~~~~gI~d~~~~~A~l~K~GGGtG~nfS~LR~~Ge~Isg-gG~SSG~vsFmkifD 262 (1220)
T PRK07562 185 TKSKSAYEHPQPHACFIQSV-EDDLVNEGGIMDLWVREARLFKYGSGTGSNFSNLRGEGEKLSG-GGKSSGLMSFLKIGD 262 (1220)
T ss_pred cccccccCCCCcceEEeccc-CCcccccchHHHHHHHHHHHHhcCCeEeecccccCCCCCcCCC-CCcCCChhhHHHHHH
Confidence 5889999999997 78984 99999999999999999999999999999999988 799999999999999
Q ss_pred HHHHHHhhCCCcccCceEEeecCCcccHHHHHHhhhhc-----------------------------Ccccc--------
Q 003575 281 DTARYVDQGGGKRKGAFAIYLEPWHADIFEFLDLRKNQ-----------------------------GKEEC-------- 323 (810)
Q Consensus 281 ~~~~~v~qgG~~Rrga~~~yl~~wH~DI~~Fl~~K~~~-----------------------------g~e~~-------- 323 (810)
+++.+|+|||++||||.|+||++|||||++||++|++. |+++.
T Consensus 263 ~aa~aIkQGG~tRRGA~mv~LdvdHPDIeeFI~~K~~ee~Kvaalv~gski~~k~lk~I~~A~~~~~G~~~~~~DP~~Np 342 (1220)
T PRK07562 263 RAAGAIKSGGTTRRAAKMVIVDIDHPDIEEFIDWKVKEEQKVAALVTGSKIVSKHLKAIMKACVNCEGDGDDCFDPAKNP 342 (1220)
T ss_pred HHHHHHHhCCCCccCceEEEecCCcccHHHHHHhccchhhhHHhhhhcchHHHHHHHHHHHHHHhccccccccCCccccH
Confidence 99999999996699999999999999999999999741 11110
Q ss_pred --------------------------------------------------cccccceecccCHHHHHHHhcCCceEEecC
Q 003575 324 --------------------------------------------------RARDLFYALWVPDLFMERVRDDGKWSLFCP 353 (810)
Q Consensus 324 --------------------------------------------------r~~~l~~sv~ipD~Fm~rv~~~~~w~Lf~P 353 (810)
...|+|+||+|+|+||++|++|++|.|++|
T Consensus 343 aLk~aI~~Ak~~~vP~~~I~RvI~~A~qg~~~~~f~~yd~~~~~e~y~tv~~qN~N~SV~VtDeFM~aVe~d~~w~L~~p 422 (1220)
T PRK07562 343 ALKREIKAAKKALVPENYIKRVIQFARQGYTDIDFPTYDTDWDSEAYLTVSGQNSNNSVRVTDEFLRAVENDGDWNLTAR 422 (1220)
T ss_pred HHHHHHHHHHhccCCHHHHHHHHHHhhcccccccccccccccccchhcccccccccceeccCHHHHHHHHCCCCeeeecc
Confidence 125789999999999999999999999998
Q ss_pred CCCCCchhhhhhhHHHHHHHHHHcCceeEEEeHHHHHHHHHHHHHhhCCceeEechhhhhhCCCCCCCeEEeecCCcccc
Q 003575 354 SDASGLADSWGIEFEHLYSQYEEEGRAKMVISARKLWFEILNSQIETGTPYMLFKDSCNRKSNQQNLGTIKSSNLCTEIV 433 (810)
Q Consensus 354 ~~~~~L~~~~g~eF~~~Y~~~e~~~~~~~~v~Ar~l~~~I~~~~~etG~P~i~f~D~~Nr~~~~~~~g~I~~sNlC~EI~ 433 (810)
.+ |+..++|+||+||++|++++|+||+|||+|+|++|+++|+++.|+|++||||+||+
T Consensus 423 ~~----------------------gkv~ktV~AReLw~kI~~aawetGdPgI~F~DtiN~~~~~~~~G~I~aSNPCsEi~ 480 (1220)
T PRK07562 423 TD----------------------GKVAKTLKARDLWEKIGYAAWASADPGLQFNTTINDWHTCPASGPIRASNPCSEYM 480 (1220)
T ss_pred CC----------------------CceeeEeeHHHHHHHHHHHHHHHCCceEEEehhhhhcCCCccCCeeEeecCccccc
Confidence 64 56789999999999999999999999999999999999999999999999999998
Q ss_pred ccCCCCCceeeeccccCchhhhhccCCccccccccccccCCCCCccCCHHHHHHHHHHHHHHHHHHHhcCCCChHHHHHH
Q 003575 434 EFSSPEETAVCNLASIALPRYVREKGVPVQSNVSKLVGSRDSKNRLFDFERLAEVTKIITENLNKIIDVNHYPIETTRRS 513 (810)
Q Consensus 434 ~~~~~~e~~~CNL~SInL~~~v~~~~~~~~~~~~~~~g~~~~~~~~fD~~~l~~~v~~avr~LD~vId~~~~p~~~~~~~ 513 (810)
++. ..+|||+||||.+|+.+. ...||++.|+++|++++++||++||++.||++++++.
T Consensus 481 lld----~~aCNLaSINL~~Fv~~~------------------~~~fD~e~l~~avrl~t~~LDi~id~~~yP~~ei~~~ 538 (1220)
T PRK07562 481 FLD----DTACNLASLNLLTFRDED------------------TKRFDVEAYEHACRLWTVVLEISVLMAQFPSKEIAEL 538 (1220)
T ss_pred CCC----CCcccchhhhHHHHhcCC------------------CCccCHHHHHHHHHHHHHHHHHHhhcccCCcHHHHHH
Confidence 763 237999999999999642 2359999999999999999999999999999999999
Q ss_pred hhccCCceeecchHHHHHHHcCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCCCCCCcc------------c
Q 003575 514 NLRHRPIGIGIQGLADTFILLGLPFESPEAQQLNKDIFETIYYHALKASAELAVKDGPYETYFGSPM------------S 581 (810)
Q Consensus 514 ~~~~R~iGlGv~Glad~L~~~gi~y~S~ea~~l~~~i~e~i~~~a~~aS~eLAke~G~~~~f~~S~~------------~ 581 (810)
++++|+||||+|||||+|+++||||+|+||++++++||+.|+++|+++|++||+|+|+||.|++|+| +
T Consensus 539 ~~~~R~IGLGvmGLadlL~~lGipYdS~EAr~la~~I~~~m~~~Ay~aSaELAkE~G~Fp~f~~s~~~~lrv~r~h~~aa 618 (1220)
T PRK07562 539 SYEFRTLGLGYANIGGLLMTMGIPYDSDEGRAICGALSAIMTGVAYATSAEMAKELGPFPGYEKNADHMLRVIRNHRRAA 618 (1220)
T ss_pred HhcCCCeeehHHHHHHHHHHcCCCcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCcccChhhhhhhhhhhhhhh
Confidence 9999999999999999999999999999999999999999999999999999999999999999997 3
Q ss_pred cCccc-cccccCCC---------------CCcccHHHHHHHHHhcCccccceeccCCCcchhhhcCC-Ccccccccccee
Q 003575 582 KGILQ-VDMWNITP---------------SDRWDWSSLREMISKNGVRNSLLVAPMPTASTSQILGN-NECFEPYTSNIY 644 (810)
Q Consensus 582 ~G~l~-~d~~~~~~---------------~~~~dW~~Lr~~i~~~G~RNs~l~AiaPT~stS~i~g~-s~gieP~~s~~y 644 (810)
.|.++ ++.++..| ....+|++|++.+++||+|||++++||||||||+|+|+ |+||||.|+++|
T Consensus 619 ~g~~~gy~~~~~~p~~~~~~~~~~~~l~~~a~~~W~~l~~~i~k~G~RNA~ltaIAPTGTISlI~d~dTtGIEP~fAlv~ 698 (1220)
T PRK07562 619 HGESEGYEGLSVNPVPLDHANCPDQDLVAHAKAAWDKALELGEKHGYRNAQVTVIAPTGTIGLVMDCDTTGIEPDFALVK 698 (1220)
T ss_pred ccccccccccccCcccccccccchhhhccchhhhHHHHHHHHHHhCcccccccccCCcHHHHHhcCCCCCCcccCccceE
Confidence 34332 33333322 12468999999999999999999999999999999999 999999999998
Q ss_pred eEEcc-cCceEEeCHHHHHHHHHcCCChHHHHHHHH--hcCCccccccCCc-----------------------------
Q 003575 645 TRRVL-SGEFIVVNKHLLKDLTELGLWSHALKTKII--YENGSVSKISEIP----------------------------- 692 (810)
Q Consensus 645 ~r~~~-~g~~~~vn~~l~~~l~~~g~~~~~~~~~i~--~~~Gsv~~~~~lp----------------------------- 692 (810)
.|+.. +|+|.+||+++.++|+++|+|++++.+.+. ..+|+++++|.+|
T Consensus 699 ~kkl~gGg~f~ivN~~l~~~L~~lG~~~~~i~~i~~~~~~~Gsl~~~~~i~~~~l~~~Gf~~~~~~~~~~~l~~~fdi~~ 778 (1220)
T PRK07562 699 FKKLAGGGYFKIINRAVPEALRTLGYSESQIAEIEAYAVGHGTLNQAPGINHSTLKAKGFTDEKIEKVEAALKSAFDIKF 778 (1220)
T ss_pred EEEeccceeEEEEcHHHHHHHHHcCCCHHHHHHHHHHhhcCCCccCCCCCCHHHHhhcCCcHHHHHHHHHHhhhhhhhhh
Confidence 88755 569999999999999999999887755442 2578887766664
Q ss_pred -------------------------------------------------------------hHHHhhccccc--------
Q 003575 693 -------------------------------------------------------------EELKAIYKTVW-------- 703 (810)
Q Consensus 693 -------------------------------------------------------------~~~k~~y~tA~-------- 703 (810)
++...+|.+|.
T Consensus 779 ~fn~~~lg~~f~~~~lg~~~~~~~~~~f~ll~~~g~t~~~i~aan~~v~g~~~~e~ap~l~~eh~~vFd~A~~~g~~g~r 858 (1220)
T PRK07562 779 AFNKWTLGEDFCKDTLGIPAEQLNDPSFDLLEHLGFSKKDIEAANDHVCGAMTLEGAPFLKAEHLPVFDCANPCGKIGKR 858 (1220)
T ss_pred hhcccccchhhhhhcccCcHhhhccccchhhhhcccchhhHHHhhhhcccccccccCcccchhhhhhccccccccccccc
Confidence 34445788874
Q ss_pred cCChHHHHHHHHHhCcccccccceeEeeCC-CChHHHHHHHHHHHHcCCceEEEEecCccccccccc
Q 003575 704 EIKQKTLVDMAADRGCYIDQSQSLNIHMEQ-PDHGKLTSLHFYAWSKGMKTGMYYLRTRAAADAIKF 769 (810)
Q Consensus 704 ei~~~~~i~~~a~~Q~~vDqs~S~nl~~~~-~~~~~l~~~~~~Awk~GlKt~~yY~r~~~~~~~~~~ 769 (810)
+|++++||+|+|+.|||||.+||+|||+|+ +|++|+.++|+.||++|||+++.|....+..++...
T Consensus 859 ~i~~~~Hi~M~aA~Q~fis~aISKTvNmP~~ATveDv~~~y~~a~~lG~KaitlYRdgsk~~qpL~~ 925 (1220)
T PRK07562 859 YLSVESHIRMMAAAQPFISGAISKTINMPNEATVEDCKNAYMLSWKLALKANALYRDGSKLSQPLNS 925 (1220)
T ss_pred cCCHHHHHHHHHHhhhhccccccceeeCCCCCCHHHHHHHHHHHHHhCCcceEEEecCCcccccccc
Confidence 899999999999999999999999999995 899999999999999999999999766666655443
No 31
>cd01676 RNR_II_monomer Class II ribonucleotide reductase, monomeric form. Ribonucleotide reductase (RNR) catalyzes the reductive synthesis of deoxyribonucleotides from their corresponding ribonucleotides. It provides the precursors necessary for DNA synthesis. RNRs are separated into three classes based on their metallocofactor usage. Class I RNRs, found in eukaryotes, bacteria, and bacteriophage, use a diiron-tyrosyl radical. Class II RNRs, found in bacteria, bacteriophage, algae and archaea, use coenzyme B12 (adenosylcobalamin, AdoCbl). Class III RNRs, found in anaerobic bacteria, bacteriophage, and archaea, use an FeS cluster and S-adenosylmethionine to generate a glycyl radical. Many organisms have more than one class of RNR present in their genomes. All three RNRs have a ten-stranded alpha-beta barrel domain that is structurally similar to the domain of PFL (pyruvate formate lyase). Class II RNRs are found in bacteria that can live under both aerobic and anaerobic conditions. Man
Probab=100.00 E-value=3.9e-85 Score=762.98 Aligned_cols=493 Identities=17% Similarity=0.130 Sum_probs=411.8
Q ss_pred HHHHhhccc-cCCcccCCHHHHHHHHHhhhcc--C-------------ChHHHHHHHHHHhcCceecCCccccccCCC--
Q 003575 150 TLERSYLLK-MDSRVVERPQHMLMRVSVGIHK--D-------------DTDSALKTYHLMSQHWFTHATPTLFNAGTP-- 211 (810)
Q Consensus 150 ~l~~~Yllk-~~g~~~E~pq~~~~RVA~~l~~--~-------------~~~~~~~~y~~ls~~~~~~atP~l~naGt~-- 211 (810)
+++++|... .+|+. |+++++..||-.+... . ..+++.++|+++.++++.|++++|+-+||+
T Consensus 4 v~~RTYsR~~~~g~r-E~W~etv~Rvv~~~~~l~~~~~~~~~~~~~~~~~~e~~~l~~~~~~~k~lPsGR~Lw~~Gt~~~ 82 (658)
T cd01676 4 TYYRTYSRPKEEGQN-ENWDQTVERVVEGTFELWERHLGNPLRWLNEKAEEEAEELRSLIFELKALPPGRGLWLGGTDYS 82 (658)
T ss_pred eEEEeccccCCCCCc-cChHHHHHHHHhcchhhchhhccccchhhhhhhhHHHHHHHHHHHhcccCCCccchhhcCchhh
Confidence 346788854 56644 9999999999887542 1 135677899999999999999999999985
Q ss_pred --C-C-CCcccccccc----------------------------------------------------------------
Q 003575 212 --Q-P-QLSSCFLLCM---------------------------------------------------------------- 223 (810)
Q Consensus 212 --~-~-~lsSCfl~~~---------------------------------------------------------------- 223 (810)
+ + .+.||....+
T Consensus 83 ~~~~~~~~~NC~f~~~~~~~~~f~~~~~llm~G~GvG~~~~~~~i~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 162 (658)
T cd01676 83 RQRRFASLNNCAFVSTEDVVYPFVFLMDLLMQGCGVGFDTAGSNISQIPRPLQEIKVQRVNRTEKGGIQNNVETYDPTQH 162 (658)
T ss_pred hcccccccccceeeccccchhhHHHHHHHHhcCCcCCeEecccchhhCCCcccccceeeccccccccccccceeeccCCc
Confidence 2 1 3566654332
Q ss_pred -----cCCChHHHHHHHHHHHHHHH-hcCCcceeeeeecCCCCcccCCCCCCCCcccHHHHHHHH---------------
Q 003575 224 -----KDDSIEGIYDTLKKCAIISK-SAGGIGLSIHNIRASGSYIHGTNGSSNGIVPMLQVFNDT--------------- 282 (810)
Q Consensus 224 -----~~DS~~~I~~~~~~~a~isk-~ggGiG~~~s~iR~~Gs~I~g~~g~ssG~vp~lk~~~~~--------------- 282 (810)
++||+|||.++++.+..+.. ..-++++|||.|||+|++|+|++|+||||+||+++|+.+
T Consensus 163 ~~~~~v~Ds~egw~~~~~~l~~~~~~~~~~~~~d~S~iRP~G~~lkg~gG~asGp~~~~~~~~~~~~iL~~~~G~~L~~i 242 (658)
T cd01676 163 TWIIKVPDSREGWVKSVQLLLDLYFNPAQTLIFDYSDIRPAGERLKGFGGIASGPEPLKKLHKAIAAILNDRSGKPLTSV 242 (658)
T ss_pred eeEEEcCCCHHHHHHHHHHHHHhcccCCCceEEecccCCCCCCcccCCCCCCCCcHHHHHHHHHHHHHHhhhcccccchh
Confidence 36899999999987755543 344789999999999999999999999999999999996
Q ss_pred ---------HHHHhhCCCcccCceEEeecCCcccHHHHHHhhhhcCcccccccccceecccCHHHHHHHhcCCceEEecC
Q 003575 283 ---------ARYVDQGGGKRKGAFAIYLEPWHADIFEFLDLRKNQGKEECRARDLFYALWVPDLFMERVRDDGKWSLFCP 353 (810)
Q Consensus 283 ---------~~~v~qgG~~Rrga~~~yl~~wH~DI~~Fl~~K~~~g~e~~r~~~l~~sv~ipD~Fm~rv~~~~~w~Lf~P 353 (810)
+.+|.||| .||||.|. ++||||++||++|+..+...+ ..|.+..+
T Consensus 243 d~~di~n~~~~~v~~Gg-~RR~A~M~---~~HpDi~eFi~aK~~~~~~~n----------------------~~~~~~~n 296 (658)
T cd01676 243 DIVDLMNLIGVCVVSGN-VRRSAEIA---FGQPEDEDFADLKQYQWNPGR----------------------REHGWASN 296 (658)
T ss_pred HHHHHHhhhhcEEeecC-cccceecC---CCCccHHHHHHhcccCCcccc----------------------chhheecc
Confidence 55788998 89998885 899999999999986543321 12333222
Q ss_pred CCCCCchhhhhhhHHHHHHHHHHcCceeEEEeHHHHHHHHHHHHHhhCCceeEechhhhhhCCC------CCCCeEEeec
Q 003575 354 SDASGLADSWGIEFEHLYSQYEEEGRAKMVISARKLWFEILNSQIETGTPYMLFKDSCNRKSNQ------QNLGTIKSSN 427 (810)
Q Consensus 354 ~~~~~L~~~~g~eF~~~Y~~~e~~~~~~~~v~Ar~l~~~I~~~~~etG~P~i~f~D~~Nr~~~~------~~~g~I~~sN 427 (810)
++...+++++|++|.+|++++|+||+|||+|+|++|+++|+ .+.|+|.+||
T Consensus 297 -----------------------~s~~~~~~~ar~~~~~I~~~~~~tGEPGi~f~D~~N~~~~~~~~~~~~~~g~I~~TN 353 (658)
T cd01676 297 -----------------------NSVVFESKPDRLEYSFACMLIRGNGEPGIAWLDNMKAYARMVLLTTPYHDLRAKGGN 353 (658)
T ss_pred -----------------------cchheeehhhHHHHHHHHHHHHHhCCCcEEEHHHHHhhCccccccccccCCeeEecc
Confidence 22345788999999999999999999999999999999975 2458899999
Q ss_pred CCccccccCCCCCceeeeccccCchhhhhccCCccccccccccccCCCCCccCCHHHHHHHHHHHHHHHHHHHhcCCCCh
Q 003575 428 LCTEIVEFSSPEETAVCNLASIALPRYVREKGVPVQSNVSKLVGSRDSKNRLFDFERLAEVTKIITENLNKIIDVNHYPI 507 (810)
Q Consensus 428 lC~EI~~~~~~~e~~~CNL~SInL~~~v~~~~~~~~~~~~~~~g~~~~~~~~fD~~~l~~~v~~avr~LD~vId~~~~p~ 507 (810)
||+||+|++ +++|||+||||.+|+. |+++|+++++++|||||+||+ +.||+
T Consensus 354 PCgEi~L~~----~~~CNLgSINL~~~v~------------------------d~~~l~~~v~~avRflD~Vi~-~~~p~ 404 (658)
T cd01676 354 PCGEISLES----YELCNLVEVFPLKHEG------------------------DLEDLQETLYLAGRYAKTVTL-LPLHW 404 (658)
T ss_pred ccccccCCC----CCceechhccHHhhcc------------------------cHHHHHHHHHHHHHHHHHhhc-ccCch
Confidence 999999874 3689999999999973 678999999999999999998 56999
Q ss_pred HHHHHHhhccCCceeecchHHHHHHHcCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCCCCCCccccCcccc
Q 003575 508 ETTRRSNLRHRPIGIGIQGLADTFILLGLPFESPEAQQLNKDIFETIYYHALKASAELAVKDGPYETYFGSPMSKGILQV 587 (810)
Q Consensus 508 ~~~~~~~~~~R~iGlGv~Glad~L~~~gi~y~S~ea~~l~~~i~e~i~~~a~~aS~eLAke~G~~~~f~~S~~~~G~l~~ 587 (810)
|+++++++++|+||||+|||||+|+++|++|+++++. ++++.++..+.++|.++|+|+|.
T Consensus 405 ~~~~~~~~~~R~IGlGvmGlaD~L~~lgi~~~~~~~~----~~~~~~~~~~~~~s~ela~e~G~---------------- 464 (658)
T cd01676 405 EITNEIILRNRRIGVSMSGIADFIVRAGGDLTLHDLK----RWRNIGYEAVYQYDERLSKWLGI---------------- 464 (658)
T ss_pred HHHHHHHHhcccceeeeecHHHHHHHcCCCccHHHHH----HHHHHHHHHHHHHHHHHHHHhCC----------------
Confidence 9999999999999999999999999999999888776 45555566666778889988773
Q ss_pred ccccCCCCCcccHHHHHHHHHhcCccccceeccCCCcchhhhcCCCccccccccceeeEEcccCceEEeCHHHHHHHHHc
Q 003575 588 DMWNITPSDRWDWSSLREMISKNGVRNSLLVAPMPTASTSQILGNNECFEPYTSNIYTRRVLSGEFIVVNKHLLKDLTEL 667 (810)
Q Consensus 588 d~~~~~~~~~~dW~~Lr~~i~~~G~RNs~l~AiaPT~stS~i~g~s~gieP~~s~~y~r~~~~g~~~~vn~~l~~~l~~~ 667 (810)
.||+++||||||||+|+|+|+|+||||+||++|+|+++.+ .|++|++.|++.
T Consensus 465 ------------------------~rn~~lTTIAPTGTiSliaG~SsGIEP~fA~~y~Rrv~~~----~~~pl~~~l~~~ 516 (658)
T cd01676 465 ------------------------PLSIKVTCVKPSGTISLLAGASPGMHYPLGKYLIRRIRFQ----KHDPLAPALIAA 516 (658)
T ss_pred ------------------------ccccceEEECCCchHHHhcCCCCCcChhHhHHHHhhhhcc----cCcHHHHHHHHc
Confidence 1788999999999999999999999999999999998865 589999999999
Q ss_pred CCChHHHHHHHHhcCCccccccCCchHHHhhccccccCChHHHHHHHHHhCc-ccccccceeEeeCCC-ChHHHHHHHHH
Q 003575 668 GLWSHALKTKIIYENGSVSKISEIPEELKAIYKTVWEIKQKTLVDMAADRGC-YIDQSQSLNIHMEQP-DHGKLTSLHFY 745 (810)
Q Consensus 668 g~~~~~~~~~i~~~~Gsv~~~~~lp~~~k~~y~tA~ei~~~~~i~~~a~~Q~-~vDqs~S~nl~~~~~-~~~~l~~~~~~ 745 (810)
|+|.++... .. .+.++.+|++.+++|+||+||+|++||+|||++|+ |+||+||+|||+++. +.++|.++|.+
T Consensus 517 G~~~~~~~~----~~--~~~l~~iP~~~~~~f~Ta~dIs~~~hl~~qA~~Q~y~vD~avSkTIn~p~~~~~~dV~~~l~~ 590 (658)
T cd01676 517 GYHVEPDIY----DP--TSVLVEFPVKAGNADRTANTVSIVEQLSLLAFLQTYWADNQVSNTISFDPSPEGPALIQALQQ 590 (658)
T ss_pred CCCcHHHHh----cc--CCCcccCCHHHHhhcCCHHhCCHHHHHHHHHHhCcCCeeecccceEeeCCCCCHHHHHHHHHH
Confidence 999876432 23 35688999999999999999999999999999999 699999999999874 89999999999
Q ss_pred HHHcCCceEEEEecCcc---cccccccccccccc
Q 003575 746 AWSKGMKTGMYYLRTRA---AADAIKFTVDTSVL 776 (810)
Q Consensus 746 Awk~GlKt~~yY~r~~~---~~~~~~~~~~~~~~ 776 (810)
+|. ||||++.|.|..+ .++++...++++.-
T Consensus 591 ~~~-~~KG~t~l~~~d~~~~~~q~P~E~I~ke~y 623 (658)
T cd01676 591 FQY-QYKSVSLLPRFDTTKNAAQMPFEPITKERY 623 (658)
T ss_pred hhc-CCeEEEEeecCCcccCcccCCccccCHHHH
Confidence 965 9999999975433 23667777887653
No 32
>TIGR02505 RTPR ribonucleoside-triphosphate reductase, adenosylcobalamin-dependent. This model represents a group of adenosylcobalamin(B12)-dependent ribonucleotide reductases (RNR) related to the characterized species from Lactococcus leichmannii. RNR's are responsible for the conversion of the ribose sugar of RNA into the deoxyribose sugar of DNA. This is the rate-limiting step of DNA biosynthesis. Thus model identifies NrdJ enzymes only in cyanobacteria, lactococcus and certain bacteriophage. A separate model (TIGR02504) identifies a larger group of divergent B12-dependent RNR's.
Probab=100.00 E-value=2.1e-72 Score=656.71 Aligned_cols=481 Identities=18% Similarity=0.213 Sum_probs=392.7
Q ss_pred CChhhHHHHHHhhccc-cCCcccCCHHHHHHHHHhhhcc---------------CChHHHHHHHHHHhcCceecCCcccc
Q 003575 143 FDYFGFKTLERSYLLK-MDSRVVERPQHMLMRVSVGIHK---------------DDTDSALKTYHLMSQHWFTHATPTLF 206 (810)
Q Consensus 143 ~~y~g~~~l~~~Yllk-~~g~~~E~pq~~~~RVA~~l~~---------------~~~~~~~~~y~~ls~~~~~~atP~l~ 206 (810)
+.-.|..+++++|... .++..-|++.++..||-.+-.. ...+++.+.|+++.++++.|++++|+
T Consensus 8 ~~~~g~~vy~Rtysr~~~~~~r~E~W~eTv~Rvv~~~~~l~~~~~~~~~~~~~~~~~~e~~~l~~~i~~~k~lPsGR~LW 87 (713)
T TIGR02505 8 WGKTALVTYKRTYARWLPEKGRSENWDETVERVVSGNRNLWPRLQDRPLLELQQSLTEEAERLYRLIYELKALPSGRNLW 87 (713)
T ss_pred cccccceeEeecccccCCCCCCCCCchhheeeeecCccccchhhhccchhhhhhhhHHHHHHHHHHHHhcccCCCccchh
Confidence 3445666778888843 5555679999988887655221 11256778999999999999999999
Q ss_pred ccCCC----CC-CCcccccccc----------------------------------------------------------
Q 003575 207 NAGTP----QP-QLSSCFLLCM---------------------------------------------------------- 223 (810)
Q Consensus 207 naGt~----~~-~lsSCfl~~~---------------------------------------------------------- 223 (810)
-+||+ .+ .+.||....+
T Consensus 88 ~gGt~~~~~~~~~~~NC~f~~~~~~~~F~~~~~llM~G~GVGf~~~~~~i~~lp~v~~~~~~~~~~~~~~~~~~~~~~~~ 167 (713)
T TIGR02505 88 IGGTDYQRRTEDSLFNCWFTAIRPQKPFSFLFDLLMKGCGVGFSVARSNISQIPRVDQEIKVQLVVDETSESYDASVEVG 167 (713)
T ss_pred hcCchhhhccchhhccceecccccccCHHHHHHHHhcCCcCCEEecccchhhCCCccccceeeeecccCCCChhhhhhhc
Confidence 99974 22 3667765544
Q ss_pred ------------cCCChHHHHHHHHHHHHHHHhcC------CcceeeeeecCCCCcccCCCCCCCCcccHHHHH------
Q 003575 224 ------------KDDSIEGIYDTLKKCAIISKSAG------GIGLSIHNIRASGSYIHGTNGSSNGIVPMLQVF------ 279 (810)
Q Consensus 224 ------------~~DS~~~I~~~~~~~a~isk~gg------GiG~~~s~iR~~Gs~I~g~~g~ssG~vp~lk~~------ 279 (810)
++||.|||.++++.+..++..+. .||+|||.|||+|++|+|++|.||||+||+++|
T Consensus 168 ~~~~~~~~~~~~v~DSreGWv~s~~~ll~~~~~~~~~~~~~~v~~dfS~iRP~Ga~lkg~GG~ASGPvsl~~l~~~i~~i 247 (713)
T TIGR02505 168 AVSKNEDVQDVDLPDTREGWVLANALLIDLHFAQTNADRKQKLVLDLSDIRPAGAELKGFGGTASGPVPLAKMLTDVAEI 247 (713)
T ss_pred ccccCCCceEEEcCCcHHHHHHHHHHHHHHhcCccccccCCceeeeccccCCCCCcccCCCCCCCCcHHHHHHHHHHHHH
Confidence 24999999999998877764433 469999999999999999999999999999998
Q ss_pred ------------------HHHHHHHhhCCCcccCceEEeecCCcccHHHHHHhhhhcCcccccccccceecccCHHHHHH
Q 003575 280 ------------------NDTARYVDQGGGKRKGAFAIYLEPWHADIFEFLDLRKNQGKEECRARDLFYALWVPDLFMER 341 (810)
Q Consensus 280 ------------------~~~~~~v~qgG~~Rrga~~~yl~~wH~DI~~Fl~~K~~~g~e~~r~~~l~~sv~ipD~Fm~r 341 (810)
|.++.+|.||| +||||.|..|+++||||++|+.+|+..|. ..+++|+||.|+|.||..
T Consensus 248 L~~~~G~~Lt~id~~di~~~~~~~Vv~Gg-vRRgA~M~~l~~dhpdi~~fi~aK~~~~~---~~~~~N~SV~v~d~f~~~ 323 (713)
T TIGR02505 248 LSNKAGGRLTAVDAADICNLIGKAVVAGN-VRRSAEMALFSNDDPEFESFKQAKEKLMH---HRWASNNSVAVDSAFSGL 323 (713)
T ss_pred HhhhccccccchhHHHHHHHHhheeeecC-ccccceeeccCCCChHHHHHHhccccccc---ccccccceeEechhHHHH
Confidence 56788999998 89999999999999999999999986542 236899999999999821
Q ss_pred HhcCCceEEecCCCCCCchhhhhhhHHHHHHHHHHcCceeEEEeHHHHHHHHHHHHHhhCCceeEechh-------hhhh
Q 003575 342 VRDDGKWSLFCPSDASGLADSWGIEFEHLYSQYEEEGRAKMVISARKLWFEILNSQIETGTPYMLFKDS-------CNRK 414 (810)
Q Consensus 342 v~~~~~w~Lf~P~~~~~L~~~~g~eF~~~Y~~~e~~~~~~~~v~Ar~l~~~I~~~~~etG~P~i~f~D~-------~Nr~ 414 (810)
.++...++++|+|+++|.|+ +|+.
T Consensus 324 -------------------------------------------------~~~~~~~~~~gePg~~fid~~~~~~~~in~~ 354 (713)
T TIGR02505 324 -------------------------------------------------ARSAADILENGEPGQVNLDLSKSEGRIVNGR 354 (713)
T ss_pred -------------------------------------------------hhhhccccccCCcchhhHhhhhccccccccc
Confidence 12233457899999999999 5777
Q ss_pred CCCCCCCeEEeecCCccccccCCCCCceeeeccccCchhhhhccCCccccccccccccCCCCCccCCHHHHHHHHHHHHH
Q 003575 415 SNQQNLGTIKSSNLCTEIVEFSSPEETAVCNLASIALPRYVREKGVPVQSNVSKLVGSRDSKNRLFDFERLAEVTKIITE 494 (810)
Q Consensus 415 ~~~~~~g~I~~sNlC~EI~~~~~~~e~~~CNL~SInL~~~v~~~~~~~~~~~~~~~g~~~~~~~~fD~~~l~~~v~~avr 494 (810)
++..+.|.|.+||||+||+|++ +++|||+||||.+|+.. -++|+++++++||
T Consensus 355 ~~~~~~~~I~~tNPCgEi~L~~----~~~CNL~sINL~~~~~~------------------------~~~l~~~~~~avr 406 (713)
T TIGR02505 355 YQAGEDGDVEGTNPCGEILLAN----GEPCNLFEVNLLAFEED------------------------GWGLQRAFALAAR 406 (713)
T ss_pred cccccCCceeecCCCccccCCC----CCceechhccHHhhccc------------------------HHHHHHHHHHHHH
Confidence 8888889999999999999874 45899999999999742 1689999999999
Q ss_pred HHHHHHhcCCCChHHHHHHhhccCCceeecchHHHHHHHcCC-------------CCCCHHHHHHHHHHHHHHHHHHHHH
Q 003575 495 NLNKIIDVNHYPIETTRRSNLRHRPIGIGIQGLADTFILLGL-------------PFESPEAQQLNKDIFETIYYHALKA 561 (810)
Q Consensus 495 ~LD~vId~~~~p~~~~~~~~~~~R~iGlGv~Glad~L~~~gi-------------~y~S~ea~~l~~~i~e~i~~~a~~a 561 (810)
+||+||+ +.||+|+++++++++|+||||+|||||+|+++|+ +|+|.++...+.++++.++..+.++
T Consensus 407 ~Ld~vi~-~~~pl~~~~~~~~~~R~IGlGv~Glad~L~~~gi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~ 485 (713)
T TIGR02505 407 YAKRVTF-SPYDDEISREIIQKNRRIGVSMSGIQDFLLLRGGTGFKDDFDPETHEAIKVRVYDKRAAKFLDRMYKIVVKA 485 (713)
T ss_pred HHHHHHh-ccCChHHHHHHHHhcCCceeehhhHHHHHHHcCCcccccccccccccccccccccHHHHHHHHHHHHHHHHH
Confidence 9999996 5799999999999999999999999999999998 7777777778888888899999999
Q ss_pred HHHHHHHcCCCCCCCCCccccCccccccccCCCCCcccHHHHHHHHHhcCccccceeccCCCcchhhhcCCCcccccccc
Q 003575 562 SAELAVKDGPYETYFGSPMSKGILQVDMWNITPSDRWDWSSLREMISKNGVRNSLLVAPMPTASTSQILGNNECFEPYTS 641 (810)
Q Consensus 562 S~eLAke~G~~~~f~~S~~~~G~l~~d~~~~~~~~~~dW~~Lr~~i~~~G~RNs~l~AiaPT~stS~i~g~s~gieP~~s 641 (810)
|.++|+|+|. .||+.+||||||||+|+|+|+|+||||+||
T Consensus 486 a~~~s~elg~----------------------------------------~r~~~~TTIaPTGTiS~laG~S~GIeP~~A 525 (713)
T TIGR02505 486 AQDYSKELGC----------------------------------------PEPIKHTTVKPSGTISKLAGASEGIHPPYG 525 (713)
T ss_pred HHHHHHHhCC----------------------------------------CCccceeeeCCccchHHhcCCCCccCcchh
Confidence 9999999883 278899999999999999999999999999
Q ss_pred ceeeEEcccCceEEeCHHHHHHHHHcCCChHHHHHHHHhcCCccc----cccCCchHH--H--hhccccc--cCChHHHH
Q 003575 642 NIYTRRVLSGEFIVVNKHLLKDLTELGLWSHALKTKIIYENGSVS----KISEIPEEL--K--AIYKTVW--EIKQKTLV 711 (810)
Q Consensus 642 ~~y~r~~~~g~~~~vn~~l~~~l~~~g~~~~~~~~~i~~~~Gsv~----~~~~lp~~~--k--~~y~tA~--ei~~~~~i 711 (810)
++|+|++. ..+|++|++.|++.|++.+....+ ...+|... .+.++|... . .-..+|. |+++.+|+
T Consensus 526 ~~y~Rri~----~~~ndpl~~~l~~~Gy~~~p~~~~-~~~~~~~~~~~~~~ve~p~~~~~~~~~~~~~a~~~diS~~~ql 600 (713)
T TIGR02505 526 AYLIRRIT----FSKSDPLAPALKACGYTVEADQYD-KNEQGRLPPCKTTLVEFPIKAVGADNPNIAEVGINTVSAAAQF 600 (713)
T ss_pred hheeeeee----eecCcHHHHHHHHcCCCCCccccc-cccccccccccceeEEeeecccccCCCCCcccccccCCHHHHH
Confidence 99999984 358999999999999987632111 00111111 011122221 0 0122555 99999999
Q ss_pred HHHHHhCc-ccccccceeEeeCCCChHHHHHHHHHHHHcC
Q 003575 712 DMAADRGC-YIDQSQSLNIHMEQPDHGKLTSLHFYAWSKG 750 (810)
Q Consensus 712 ~~~a~~Q~-~vDqs~S~nl~~~~~~~~~l~~~~~~Awk~G 750 (810)
++||..|+ |+|+++|+|+++++...++|..++.++|+.-
T Consensus 601 ~~qa~~Q~~~~DnavS~Tin~~~~e~e~v~~~~~~~~~~~ 640 (713)
T TIGR02505 601 AFYAFLQTYWSDNNVSCTITFDPSEGEQVESALRQYRDNS 640 (713)
T ss_pred HHHHHHhHhhhhccCceeEecChHHHHHHHHHHHHHHHhh
Confidence 99999999 8999999999999877999999999999844
No 33
>cd00576 RNR_PFL Ribonucleotide reductase and Pyruvate formate lyase. Ribonucleotide reductase (RNR) and pyruvate formate lyase (PFL) are believed to have diverged from a common ancestor. They have a structurally similar ten-stranded alpha-beta barrel domain that hosts the active site, and are radical enzymes. RNRs are found in all organisms and provide the only mechanism by which nucleotides are converted to deoxynucleotides. RNRs are separated into three classes based on their metallocofactor usage. Class I RNRs use a diiron-tyrosyl radical while Class II RNRs use coenzyme B12 (adenosylcobalamin, AdoCbl). Class III RNRs use an FeS cluster and S-adenosylmethionine to generate a glycyl radical. PFL, an essential enzyme in anaerobic bacteria, catalyzes the conversion of pyruvate and CoA to acteylCoA and formate in a mechanism that uses a glycyl radical.
Probab=100.00 E-value=6.6e-49 Score=442.59 Aligned_cols=372 Identities=23% Similarity=0.261 Sum_probs=332.2
Q ss_pred HHHHHHHHhcCceecCCccccccCCCCCCCcccccccccCCCh---------------HHHHHHHHHHHHHHHhc--CCc
Q 003575 186 ALKTYHLMSQHWFTHATPTLFNAGTPQPQLSSCFLLCMKDDSI---------------EGIYDTLKKCAIISKSA--GGI 248 (810)
Q Consensus 186 ~~~~y~~ls~~~~~~atP~l~naGt~~~~lsSCfl~~~~~DS~---------------~~I~~~~~~~a~isk~g--gGi 248 (810)
+++||++++++++.+++|+ .+++|||+.++ +|++ ++|...+...+.+++.+ ||+
T Consensus 1 ~~~~~~~~~~g~~~~~~~~--------~~~~~C~~~~~-~d~l~~g~~~~~~p~~~~~eai~~~~~~~~~~~~~~~~ggv 71 (401)
T cd00576 1 AERIYEAVKSGVITVGRPD--------LPFTGCVLVDY-GDSLDPGIKGVNETAKSINEAIQKTYQIIALAASNQNGGGV 71 (401)
T ss_pred CHHHHHHHHcCccccCCcc--------cccCceEEEEh-HHHHHHhhhhcCCCccCHHHHHHHHHHHHHHHHHhccCCcc
Confidence 3689999999999999997 47899999997 8999 89988888888877776 999
Q ss_pred ceee--eeecCCCCcccC-CCCCCCCcccHHHHHHHHHHHHhhCCCcccCceEEeecCCc-----ccHHHHHHhhhhcCc
Q 003575 249 GLSI--HNIRASGSYIHG-TNGSSNGIVPMLQVFNDTARYVDQGGGKRKGAFAIYLEPWH-----ADIFEFLDLRKNQGK 320 (810)
Q Consensus 249 G~~~--s~iR~~Gs~I~g-~~g~ssG~vp~lk~~~~~~~~v~qgG~~Rrga~~~yl~~wH-----~DI~~Fl~~K~~~g~ 320 (810)
|++. +.|||.|+++++ .++++.|++++|+.|+..+..+.|+| .|+|+.+++++.|| +|+++||++|.+.+.
T Consensus 72 ~~~~~d~~l~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-g~~~~~~~~lg~~~~~~~~~~~~~~l~~~~~~~~ 150 (401)
T cd00576 72 SFARASSILSPYGSRDYAKGSGTETDAVEAADAFNLALKEVGQGN-GRTGAATGFIGGVHKGKGDKISQEFLNLALANGG 150 (401)
T ss_pred CCchhhhhhhHHHHhhhhcCCCChHHHHHHHHHHHHHHhhhhhcC-CCCceEEEEECCCCccccCHHHHHHHHHHHhcCC
Confidence 9999 999999999987 57889999999999999999999987 69999999999999 999999999998776
Q ss_pred ccccccccceecccCHHHHHHHhcCCceEEecCCCCCCchhhhhhhHHHHHHHHHHcCceeEEEeHHHHHHHHHHHHHhh
Q 003575 321 EECRARDLFYALWVPDLFMERVRDDGKWSLFCPSDASGLADSWGIEFEHLYSQYEEEGRAKMVISARKLWFEILNSQIET 400 (810)
Q Consensus 321 e~~r~~~l~~sv~ipD~Fm~rv~~~~~w~Lf~P~~~~~L~~~~g~eF~~~Y~~~e~~~~~~~~v~Ar~l~~~I~~~~~et 400 (810)
+..+.+..+++|.+++.|+++ .++|+++|++++++++++
T Consensus 151 ~~~~~~~p~~sv~~~~~~~~~-----------------------------------------~~~~~~l~~~~~~~~~~~ 189 (401)
T cd00576 151 EGIPLNFPNLSVRVSSDKPGI-----------------------------------------LVKAVELKQLIAEEARKT 189 (401)
T ss_pred CCccCCCCcEEEEeecCCCCc-----------------------------------------cccHHHHHHHHHHHHHHh
Confidence 666677888888887766532 268999999999999999
Q ss_pred CCceeEechhhhhhCCCCCCCeEEeecCCccccccCCCCCceeeeccccCchhhhhccCCccccccccccccCCCCCccC
Q 003575 401 GTPYMLFKDSCNRKSNQQNLGTIKSSNLCTEIVEFSSPEETAVCNLASIALPRYVREKGVPVQSNVSKLVGSRDSKNRLF 480 (810)
Q Consensus 401 G~P~i~f~D~~Nr~~~~~~~g~I~~sNlC~EI~~~~~~~e~~~CNL~SInL~~~v~~~~~~~~~~~~~~~g~~~~~~~~f 480 (810)
|.||++|. .+|||+||||+++++.. .++...+
T Consensus 190 g~P~~~n~---------------------------------~~~~l~siNL~~~~~~~---------------~~~~~~~ 221 (401)
T cd00576 190 GSPGIFND---------------------------------ELCNLVSLNLARIMEKA---------------INGSMDV 221 (401)
T ss_pred CCCCEEEc---------------------------------cccccHHHHHHHHHHHH---------------hcccHHH
Confidence 99999987 36999999999998742 0112346
Q ss_pred CHHHHHHHHHHHHHHHHHHHhcCCCChHHHHHHhhccCCceeecchHHHHHHHcCCCCC-CHHHHHHHHHHHHHHHHHHH
Q 003575 481 DFERLAEVTKIITENLNKIIDVNHYPIETTRRSNLRHRPIGIGIQGLADTFILLGLPFE-SPEAQQLNKDIFETIYYHAL 559 (810)
Q Consensus 481 D~~~l~~~v~~avr~LD~vId~~~~p~~~~~~~~~~~R~iGlGv~Glad~L~~~gi~y~-S~ea~~l~~~i~e~i~~~a~ 559 (810)
+++.|++++++++|+||++++...+++|++++...++|++|||++|+|+++.+++++|. |++|.+++.+|++.|++.+.
T Consensus 222 ~~~~l~~~~~~~~r~l~~~~~~~~~~~~~~~~~~~~~r~~giG~~Gla~~~~~l~~~~~~~~~a~~~~~~i~~~~~~~~~ 301 (401)
T cd00576 222 VLEELEELAFLAVRALDCVIDSHDERIPTIELGGDERRTVGLGIAGVADLLIKLGLEKVGDPEADDLAAELVDQLKKHLV 301 (401)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHccCCCHHHHhCccCCccccccHhHHHHHHHHhCCcccCCHHHHHHHHHHHHHHHHHHH
Confidence 78999999999999999999999999999999889999999999999999999999999 99999999999999999998
Q ss_pred HHHHHHHHHcCCCCCCCCCccccCccccccccCCCCCcccHHHHHHHHHhcCccccceeccCCCcchhhhcCCCcccccc
Q 003575 560 KASAELAVKDGPYETYFGSPMSKGILQVDMWNITPSDRWDWSSLREMISKNGVRNSLLVAPMPTASTSQILGNNECFEPY 639 (810)
Q Consensus 560 ~aS~eLAke~G~~~~f~~S~~~~G~l~~d~~~~~~~~~~dW~~Lr~~i~~~G~RNs~l~AiaPT~stS~i~g~s~gieP~ 639 (810)
++|.+ .||+.+++++|++|+|.+.+.|+|++|.
T Consensus 302 ~~s~~-----------------------------------------------~~~~~~~~~~P~~s~~~~~~~s~gi~p~ 334 (401)
T cd00576 302 KATNE-----------------------------------------------RGFNFLLGLSPSESNSSGAPATNGVSPS 334 (401)
T ss_pred Hhhhh-----------------------------------------------cCCccccceeecccccCCCCCCCCcCCc
Confidence 88764 3789999999999999999999999999
Q ss_pred ccceeeEEcccCceEEeCHHHHHHHHHcCCChHHHHHHHHhcCCccccccCCchHHHhhccccccCChHHHHHHHHHhCc
Q 003575 640 TSNIYTRRVLSGEFIVVNKHLLKDLTELGLWSHALKTKIIYENGSVSKISEIPEELKAIYKTVWEIKQKTLVDMAADRGC 719 (810)
Q Consensus 640 ~s~~y~r~~~~g~~~~vn~~l~~~l~~~g~~~~~~~~~i~~~~Gsv~~~~~lp~~~k~~y~tA~ei~~~~~i~~~a~~Q~ 719 (810)
++++|. +++.+++|.++|+++|.+|+
T Consensus 335 ~~~~~~------------------------------------------------------~~~~~~~~~~~i~~~a~~~~ 360 (401)
T cd00576 335 RGXIAI------------------------------------------------------VLNGDIGPEESLASVAILQF 360 (401)
T ss_pred cccccc------------------------------------------------------cccccCCHHHHHHHhhcCcc
Confidence 998775 23447889999999999999
Q ss_pred ccccccceeEeeCCC-C-hHHHHHHHHHHHHcCCceEEEE
Q 003575 720 YIDQSQSLNIHMEQP-D-HGKLTSLHFYAWSKGMKTGMYY 757 (810)
Q Consensus 720 ~vDqs~S~nl~~~~~-~-~~~l~~~~~~Awk~GlKt~~yY 757 (810)
|+||++|+|+++++. . .++|.+++..||+.|+|++++|
T Consensus 361 ~~~~g~s~~i~~~~~~~~~~~l~~l~~~~~~~g~~~i~~n 400 (401)
T cd00576 361 YADNGISDTITIPDSATNLDQLLAVIDGAAAIKTTHVRVN 400 (401)
T ss_pred cccCCeeeeeecCCccccHHHHHHHHHHHHHcCCCeEEec
Confidence 999999999999864 3 8899999999999999997765
No 34
>PF00317 Ribonuc_red_lgN: Ribonucleotide reductase, all-alpha domain; InterPro: IPR013509 Ribonucleotide reductase (1.17.4.1 from EC) [, ] catalyzes the reductive synthesis of deoxyribonucleotides from their corresponding ribonucleotides. It provides the precursors necessary for DNA synthesis. RNRs divide into three classes on the basis of their metallocofactor usage. Class I RNRs, found in eukaryotes, bacteria, bacteriophage and viruses, use a diiron-tyrosyl radical, Class II RNRs, found in bacteria, bacteriophage, algae and archaea, use coenzyme B12 (adenosylcobalamin, AdoCbl). Class III RNRs, found in anaerobic bacteria and bacteriophage, use an FeS cluster and S-adenosylmethionine to generate a glycyl radical. Many organisms have more than one class of RNR present in their genomes. Ribonucleotide reductase is an oligomeric enzyme composed of a large subunit (700 to 1000 residues) and a small subunit (300 to 400 residues) - class II RNRs are less complex, using the small molecule B12 in place of the small chain []. The reduction of ribonucleotides to deoxyribonucleotides involves the transfer of free radicals, the function of each metallocofactor is to generate an active site thiyl radical. This thiyl radical then initiates the nucleotide reduction process by hydrogen atom abstraction from the ribonucleotide []. The radical-based reaction involves five cysteines: two of these are located at adjacent anti-parallel strands in a new type of ten-stranded alpha/beta-barrel; two others reside at the carboxyl end in a flexible arm; and the fifth, in a loop in the centre of the barrel, is positioned to initiate the radical reaction []. There are several regions of similarity in the sequence of the large chain of prokaryotes, eukaryotes and viruses spread across 3 domains: an N-terminal domain common to the mammalian and bacterial enzymes; a C-terminal domain common to the mammalian and viral ribonucleotide reductases; and a central domain common to all three [].; GO: 0004748 ribonucleoside-diphosphate reductase activity, 0005524 ATP binding, 0006260 DNA replication, 0055114 oxidation-reduction process; PDB: 1PEM_A 2BQ1_E 1PEU_A 1PEQ_A 1PEO_A 1XJN_A 1XJK_A 3O0O_B 1XJF_A 3O0Q_A ....
Probab=99.73 E-value=2.7e-18 Score=151.57 Aligned_cols=72 Identities=43% Similarity=0.594 Sum_probs=62.1
Q ss_pred CCChhhHHHHHHhhccc-cCCcccCCHHHHHHHHHhhhcc---------CChHHHHHHHHHHhcCceecCCccccccCCC
Q 003575 142 DFDYFGFKTLERSYLLK-MDSRVVERPQHMLMRVSVGIHK---------DDTDSALKTYHLMSQHWFTHATPTLFNAGTP 211 (810)
Q Consensus 142 ~~~y~g~~~l~~~Yllk-~~g~~~E~pq~~~~RVA~~l~~---------~~~~~~~~~y~~ls~~~~~~atP~l~naGt~ 211 (810)
.|+|+|+++|+++||+| .+|+++|+||++|||||++++. .+.+++++||++|++++|+||||||+||||+
T Consensus 2 ~~~~~a~~~l~~rYl~k~~~g~~~Etpq~~~~RVA~~la~~e~~y~~~~~~~~~~~~fy~~l~~~~f~patP~l~naGt~ 81 (83)
T PF00317_consen 2 LLSYNAAKVLYDRYLLKDEDGKVIETPQEMFMRVAMALASAEPKYDDAEDRMEWAEEFYDLLSNQKFIPATPTLSNAGTK 81 (83)
T ss_dssp GSSHHHHHHHHHHTS-BETTSCB--SHHHHHHHHHHHHHTCCGG-THCCTHHHHHHHHHHHHHTTSEEE-HHHHHHTTSS
T ss_pred CCCHHHHHHHHHhhCccCCCcCEeeCHHHHHHHHHHHHHHHcccccccCCHHHHHHHHHHHHHcCCeecCCHHHhcCCCC
Confidence 68999999999999999 4688999999999999999997 4467899999999999999999999999998
Q ss_pred CC
Q 003575 212 QP 213 (810)
Q Consensus 212 ~~ 213 (810)
+|
T Consensus 82 ~g 83 (83)
T PF00317_consen 82 RG 83 (83)
T ss_dssp S-
T ss_pred CC
Confidence 75
No 35
>PF03477 ATP-cone: ATP cone domain; InterPro: IPR005144 The ATP-cone is an evolutionarily mobile, ATP-binding regulatory domain which is found in a variety of proteins including ribonucleotide reductases, phosphoglycerate kinases and transcriptional regulators []. In ribonucleotide reductase protein R1 (P28903 from SWISSPROT) from Escherichia coli this domain is located at the N terminus, and is composed mostly of helices []. It forms part of the allosteric effector region and contains the general allosteric activity site in a cleft located at the tip of the N-terminal region []. This site binds either ATP (activating) or dATP (inhibitory), with the base bound in a hydrophobic pocket and the phosphates bound to basic residues. Substrate binding to this site is thought to affect enzyme activity by altering the relative positions of the two subunits of ribonucleotide reductase.; PDB: 2XO4_A 1RLR_A 7R1R_B 5R1R_A 2XO5_B 2XAW_A 2R1R_C 2XAY_B 2X0X_C 2XAZ_A ....
Probab=99.32 E-value=5.2e-12 Score=113.10 Aligned_cols=85 Identities=24% Similarity=0.341 Sum_probs=73.0
Q ss_pred CeEEccCCceeccChhHHHHHHHHHHh-cCCCCCCCHHHHHHHHHhhcCC----CCCHHHHHHHHHHHHHhhccCCCChH
Q 003575 1 MYVIKRDGRKEPVRFDKITARLKKLSY-GLSKEHCDPVLVAQKVCAGVYK----GVTTTQLDELAAETAAAMTVNHPDYA 75 (810)
Q Consensus 1 ~~v~krdG~~e~~~~~ki~~~i~~~~~-~l~~~~v~~~~i~~~~~~~~~~----~itt~ei~~~~~~~a~~~~~~~p~y~ 75 (810)
|+|+||||+.||||.+||.++|.+||. +...+..++.+|+.+|...|++ +|||+||++++++++. .+|.|.
T Consensus 1 i~ViKrdG~~e~F~~~KI~~~i~~a~~~~~~~~~~~~~~i~~~V~~~l~~~~~~~is~~eI~~~v~~~L~----~~~~~~ 76 (90)
T PF03477_consen 1 IKVIKRDGRVEPFDREKIVRAIEKACEASRELSEEDAEEIASEVENKLYDSGKEEISTEEIQDIVENALM----EEGFYD 76 (90)
T ss_dssp -EEEESSSSEEES-HHHHHHHHHTTCTTTSTTTST-HHHHHHHHHTC-ST----TEEHHHHHHHHHHHHH----TSTTHH
T ss_pred CEEEeCCCcEeeecHHHHHHHHHHHHHhcccccHHHHHHHHHHHHHHHHhccCCCeeHHHHHHHHHHHHH----cCChHH
Confidence 899999999999999999999999993 3333457889999999999999 9999999999999985 899999
Q ss_pred HHHHHHHHHHHHHH
Q 003575 76 LLAGRVAVSNLHKI 89 (810)
Q Consensus 76 ~lA~rl~~~~l~k~ 89 (810)
.+++++...++||+
T Consensus 77 ~a~~yi~yr~~r~e 90 (90)
T PF03477_consen 77 VARAYILYRNIRKE 90 (90)
T ss_dssp HHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHcC
Confidence 99999988888874
No 36
>PRK08270 anaerobic ribonucleoside triphosphate reductase; Provisional
Probab=99.23 E-value=1.3e-08 Score=121.21 Aligned_cols=247 Identities=16% Similarity=0.240 Sum_probs=142.6
Q ss_pred HHHHHHHHHhhCCceeEechhhhhhCCCCCCCeEEeecCCccccccC------------CCCCceeeeccccCchhhhhc
Q 003575 390 WFEILNSQIETGTPYMLFKDSCNRKSNQQNLGTIKSSNLCTEIVEFS------------SPEETAVCNLASIALPRYVRE 457 (810)
Q Consensus 390 ~~~I~~~~~etG~P~i~f~D~~Nr~~~~~~~g~I~~sNlC~EI~~~~------------~~~e~~~CNL~SInL~~~v~~ 457 (810)
++.+.+...+.|.||+.+-.+... . .|.+. -=|+-..+-. ...-++.+.-.+|||++.--.
T Consensus 345 ~d~~~e~~ak~g~p~f~n~~~~~~-~----~~~~~--~MgCR~~l~~~~~~~~~~g~~g~~~~~GnigvvTiNLPRia~~ 417 (656)
T PRK08270 345 ADLLFEMTAKYGLPYFQNFINSDL-K----PEDVR--SMCCRLQLDLRELRKRGGGLFGSAELTGSIGVVTINLPRLGYL 417 (656)
T ss_pred HHHHHHHHHhhCCccccccccccc-C----CCCcc--ccCCCCccchhhhhhhcCCcccCCCccceeeeEeccHHHHHHH
Confidence 456667788999999985322110 1 11111 1233222110 111123444558999998643
Q ss_pred cCCccccccccccccCCCCCccCCHHHHHHHHHHHHHH-------HHHHHhcCCCChHHHHHHhhccCCceeecchHHHH
Q 003575 458 KGVPVQSNVSKLVGSRDSKNRLFDFERLAEVTKIITEN-------LNKIIDVNHYPIETTRRSNLRHRPIGIGIQGLADT 530 (810)
Q Consensus 458 ~~~~~~~~~~~~~g~~~~~~~~fD~~~l~~~v~~avr~-------LD~vId~~~~p~~~~~~~~~~~R~iGlGv~Glad~ 530 (810)
. .+...| |+.|.+.+.++... |-..+..+.||.-.......++...-||+.||+++
T Consensus 418 a----------------~d~~~F-~~~L~~~l~la~~~L~~r~~~l~~~~~~~l~p~~~~~l~~~~~~~~TIG~iGl~E~ 480 (656)
T PRK08270 418 S----------------KDEEEF-FARLDELMDLAKDSLEIKRKVIERLTDKGLYPYTKRYLGTLRNHFSTIGLNGMNEA 480 (656)
T ss_pred c----------------CCHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHhcccChhHHHHHHHhcCCeeeeehhhHHHH
Confidence 1 000011 45566666666543 34445556788654432223344446899999999
Q ss_pred HH-HcCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCCCCCCccccCccccccccCCCCCcccHHHHHHHHHh
Q 003575 531 FI-LLGLPFESPEAQQLNKDIFETIYYHALKASAELAVKDGPYETYFGSPMSKGILQVDMWNITPSDRWDWSSLREMISK 609 (810)
Q Consensus 531 L~-~~gi~y~S~ea~~l~~~i~e~i~~~a~~aS~eLAke~G~~~~f~~S~~~~G~l~~d~~~~~~~~~~dW~~Lr~~i~~ 609 (810)
+. ..|...+++||.+|+.+|.++|+..+-+.+ +|.|--=+.+.+|. ...--.-.|.+-++
T Consensus 481 ~~~~~G~~~~~~e~~~f~~~vl~~m~~~~~~~~----~e~g~~~~l~~TPA---------------Es~~~rfak~D~~~ 541 (656)
T PRK08270 481 CLNFLGKDITTEEGRAFALRVLDHMRERLVEFQ----EETGNLYNLEATPA---------------EGTTYRLAKEDKKR 541 (656)
T ss_pred HHHHhCCCCCCHHHHHHHHHHHHHHHHHHHHHH----HHHCCceEEEECcc---------------chHHHHHHHHHHHH
Confidence 86 789888999999999999999998877655 44553111222221 10011122344556
Q ss_pred cCccccceeccCCCcchhhhcCCCccccccccceeeEEcccCceEEeCHHHHHHHHHcCCChHHHHHHHHhcCCcccccc
Q 003575 610 NGVRNSLLVAPMPTASTSQILGNNECFEPYTSNIYTRRVLSGEFIVVNKHLLKDLTELGLWSHALKTKIIYENGSVSKIS 689 (810)
Q Consensus 610 ~G~RNs~l~AiaPT~stS~i~g~s~gieP~~s~~y~r~~~~g~~~~vn~~l~~~l~~~g~~~~~~~~~i~~~~Gsv~~~~ 689 (810)
+|..- +.|.+.. |++.|-|.
T Consensus 542 fg~i~--------------~~g~~d~--~YYTNS~h-------------------------------------------- 561 (656)
T PRK08270 542 YPDII--------------TAGTDEE--PYYTNSTQ-------------------------------------------- 561 (656)
T ss_pred cCCcc--------------cCCCCCC--CcccCCcc--------------------------------------------
Confidence 66311 1233211 44443221
Q ss_pred CCchHHHhhccccccCChHHHHHHHHHhCcccccccceeEeeCC--CChHHHHHHHHHHHH
Q 003575 690 EIPEELKAIYKTVWEIKQKTLVDMAADRGCYIDQSQSLNIHMEQ--PDHGKLTSLHFYAWS 748 (810)
Q Consensus 690 ~lp~~~k~~y~tA~ei~~~~~i~~~a~~Q~~vDqs~S~nl~~~~--~~~~~l~~~~~~Awk 748 (810)
+| -..++++-+.|++.+..|++.+-+--.-+++++ ++.+.+.++..++.+
T Consensus 562 -~~--------v~~~~~~feki~~e~~~~~~~~GG~I~hv~l~e~~~n~~a~~~lv~~~~~ 613 (656)
T PRK08270 562 -LP--------VGYTDDPFEALELQDELQTKYTGGTVFHLYLGEAISDAEACKKLVKKALE 613 (656)
T ss_pred -cC--------CCCCCCHHHHHhhhccCcceecceEEEEEECCCCCCCHHHHHHHHHHHHH
Confidence 11 123467777899999999999988888899986 467888888888875
No 37
>PRK09263 anaerobic ribonucleoside triphosphate reductase; Provisional
Probab=99.14 E-value=3.7e-07 Score=109.90 Aligned_cols=257 Identities=18% Similarity=0.161 Sum_probs=149.8
Q ss_pred eHHHHHHHHHHHHHhhCCceeEechhhhhhCCCCCCCeEEeecCCccccc--cC----CCCCceeeecc--ccCchhhhh
Q 003575 385 SARKLWFEILNSQIETGTPYMLFKDSCNRKSNQQNLGTIKSSNLCTEIVE--FS----SPEETAVCNLA--SIALPRYVR 456 (810)
Q Consensus 385 ~Ar~l~~~I~~~~~etG~P~i~f~D~~Nr~~~~~~~g~I~~sNlC~EI~~--~~----~~~e~~~CNL~--SInL~~~v~ 456 (810)
|..+||+..+++..+.+.|++++.|..-.. .|.+..+ -|+--.+ .. .....+.+||+ ||||++.--
T Consensus 346 ~~~~l~~~a~~~~~k~~~p~f~~~~~~~~~-----~g~~~~~-MgCR~~l~~~~~~~g~~~~~Gr~nigvvTiNLPRia~ 419 (711)
T PRK09263 346 PNYDIKQLALECATKRMYPDILNYDKIVEL-----TGSFKTP-MGCRSFLQGWKDENGEEVHDGRNNLGVVTLNLPRIAL 419 (711)
T ss_pred chHHHHHHHHHHhccccCCceecccchhhc-----CCCeeeC-CCCCCcCcchhccCCCccccccceeeEEeccHHHHHH
Confidence 356889999999999999999998864222 1333322 2332111 00 11124567766 899999754
Q ss_pred ccCCccccccccccccCCCCCccCCHHHHHHHHHHHHHHHHHH------HhcCCCChHHHH--------------HHhhc
Q 003575 457 EKGVPVQSNVSKLVGSRDSKNRLFDFERLAEVTKIITENLNKI------IDVNHYPIETTR--------------RSNLR 516 (810)
Q Consensus 457 ~~~~~~~~~~~~~~g~~~~~~~~fD~~~l~~~v~~avr~LD~v------Id~~~~p~~~~~--------------~~~~~ 516 (810)
.. .++...| |+.|.+.+.++.+.|..= .....+|+-... ..-+.
T Consensus 420 ~~---------------~~d~~~F-~~~Ld~~l~la~~~L~~r~~~~~~~~~~~~P~l~~~g~~~~~l~~~~~~~~~~~~ 483 (711)
T PRK09263 420 EA---------------KGDEDKF-WEILDERLELAKKALMTRIERLKGAKPRVAPILYMYGAFGVRLKADDDVDELFKN 483 (711)
T ss_pred Hh---------------CCCHHHH-HHHHHHHHHHHHHHHHHHHHHHHhcccccCcHHHHhccccccCCCCcchHHHhcC
Confidence 21 0111112 566777777776655332 223556753211 11111
Q ss_pred cC-CceeecchHHHHHH-HcCCCCC-CHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCCCCCCccccCccccccccCC
Q 003575 517 HR-PIGIGIQGLADTFI-LLGLPFE-SPEAQQLNKDIFETIYYHALKASAELAVKDGPYETYFGSPMSKGILQVDMWNIT 593 (810)
Q Consensus 517 ~R-~iGlGv~Glad~L~-~~gi~y~-S~ea~~l~~~i~e~i~~~a~~aS~eLAke~G~~~~f~~S~~~~G~l~~d~~~~~ 593 (810)
.| .+-||+.||++++. ..|-.+. ++||.+|+.+|+++|...+-+.+ +|.|--=+.+++|.
T Consensus 484 ~~~T~siG~iGl~E~~~~~~G~~~~e~~e~~~fa~~vl~~m~~~~~~~~----~e~g~~~~l~~TPA------------- 546 (711)
T PRK09263 484 GRATISLGYIGLYETINALYGGSWEVNPEAKAFALAIVKRMKDACDQWK----KETGYGFSLYSTPS------------- 546 (711)
T ss_pred CCceEeeeHhHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHHHHHHHHHH----HHHCCceEEEECCc-------------
Confidence 12 45799999999986 7888877 99999999999999998777655 55553212222221
Q ss_pred CCCcccHHHHHHHHHhcCccccceeccCCCcchhhhcCCCccccccccceeeEEcccCceEEeCHHHHHHHHHcCCChHH
Q 003575 594 PSDRWDWSSLREMISKNGVRNSLLVAPMPTASTSQILGNNECFEPYTSNIYTRRVLSGEFIVVNKHLLKDLTELGLWSHA 673 (810)
Q Consensus 594 ~~~~~dW~~Lr~~i~~~G~RNs~l~AiaPT~stS~i~g~s~gieP~~s~~y~r~~~~g~~~~vn~~l~~~l~~~g~~~~~ 673 (810)
...--.-.|.+-+++|+ +-|.+.. |++.|-|.
T Consensus 547 --Es~~~rfak~D~~~fg~----------------i~g~~d~--~YYTNS~h---------------------------- 578 (711)
T PRK09263 547 --ESLTDRFCRLDTEKFGV----------------IPGITDK--GYYTNSFH---------------------------- 578 (711)
T ss_pred --chHHHHHHHHHHHHcCC----------------CCCCCCC--CccCCCEe----------------------------
Confidence 11111223445566773 1233221 44443321
Q ss_pred HHHHHHhcCCccccccCCchHHHhhccccccCChHHHHHHHHHhCcccccccceeEeeCC--CChHHHHHHHHHHHHcCC
Q 003575 674 LKTKIIYENGSVSKISEIPEELKAIYKTVWEIKQKTLVDMAADRGCYIDQSQSLNIHMEQ--PDHGKLTSLHFYAWSKGM 751 (810)
Q Consensus 674 ~~~~i~~~~Gsv~~~~~lp~~~k~~y~tA~ei~~~~~i~~~a~~Q~~vDqs~S~nl~~~~--~~~~~l~~~~~~Awk~Gl 751 (810)
+| --.++++-+-|+..+..|++..-+--.-+++++ ++.+.+.++..+|.+ +
T Consensus 579 -----------------~p--------v~~~i~~~eki~~e~~~~~~~~GG~I~yve~~~~~~n~~a~~~lv~~~~~-~- 631 (711)
T PRK09263 579 -----------------YD--------VRKKVNPFEKLDFEKPYPPLASGGFIHYCEYPNLQHNLKALEAVWDYSYD-R- 631 (711)
T ss_pred -----------------cC--------CCCCCCHHHHHHhhcccccccCCeEEEEEecCCCcCCHHHHHHHHHHHHH-C-
Confidence 11 112366777788999999988776444555664 466788888888877 3
Q ss_pred ceEEEE
Q 003575 752 KTGMYY 757 (810)
Q Consensus 752 Kt~~yY 757 (810)
+-|+
T Consensus 632 --i~Y~ 635 (711)
T PRK09263 632 --VGYL 635 (711)
T ss_pred --CCeE
Confidence 4565
No 38
>PRK07111 anaerobic ribonucleoside triphosphate reductase; Provisional
Probab=98.98 E-value=5.6e-07 Score=108.69 Aligned_cols=261 Identities=19% Similarity=0.230 Sum_probs=148.5
Q ss_pred eHHHHHHHHHHHHHhhCCceeEechhh-hhhCCCCCCCeEE--eecCCccccccCC----CCC--ceeeeccccCchhhh
Q 003575 385 SARKLWFEILNSQIETGTPYMLFKDSC-NRKSNQQNLGTIK--SSNLCTEIVEFSS----PEE--TAVCNLASIALPRYV 455 (810)
Q Consensus 385 ~Ar~l~~~I~~~~~etG~P~i~f~D~~-Nr~~~~~~~g~I~--~sNlC~EI~~~~~----~~e--~~~CNL~SInL~~~v 455 (810)
|..+||+..+++....+-|+++|.|.. |...-. .|... -.-=|+-..+..+ ..- .+.-.+.+|||++.-
T Consensus 378 p~~~l~~la~~~~~kr~~p~f~~~~~~~~~~~~~--~g~~~~~v~~MgCR~~l~~~~~G~~~~~g~Gn~gvVTINLpRiA 455 (735)
T PRK07111 378 PNYDLFKLACRVAAKRLFPNFSFLDAPFNKEYYD--KGRPPTEVATMGCRTRVMSNVNGEEGTKGRGNLSFTTINLPRLA 455 (735)
T ss_pred chHHHHHHHHHHhcCcCCCceeecccccchhccC--CCCcCcCcccCCCcceecccCCCcccccCccceeEEEecHHHHH
Confidence 467899999999999999999999865 221100 01100 0012222221110 111 233445699999986
Q ss_pred hccCCccccccccccccCCCCCccCCHHHHHHHHHHHHHHHHH---HH---hcCCCChHHH---HHHh------------
Q 003575 456 REKGVPVQSNVSKLVGSRDSKNRLFDFERLAEVTKIITENLNK---II---DVNHYPIETT---RRSN------------ 514 (810)
Q Consensus 456 ~~~~~~~~~~~~~~~g~~~~~~~~fD~~~l~~~v~~avr~LD~---vI---d~~~~p~~~~---~~~~------------ 514 (810)
-.. .++...| |+.|.+.+.++.+.|+. ++ ....+|.-.. -...
T Consensus 456 ~~a---------------~~d~~~F-~~~L~~~l~la~~~L~~R~~~l~~~~~~~~P~~~~~g~~l~~~~l~~~~~~~~~ 519 (735)
T PRK07111 456 IEA---------------KKDIDKF-FELLDERLELAIEQLLHRYEVQKTLKVKDFPFLMGQGLWKGSENLGPDDSIEPV 519 (735)
T ss_pred HHh---------------CCCHHHH-HHHHHHHHHHHHHHHHHHHHHHHhcccccCchHhhcccccccccCCCccchhHH
Confidence 421 0111112 45677777777666642 12 2344665321 0000
Q ss_pred hccCCceeecchHHHHHH-HcCCCC-CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCCCCCCccccCccccccccC
Q 003575 515 LRHRPIGIGIQGLADTFI-LLGLPF-ESPEAQQLNKDIFETIYYHALKASAELAVKDGPYETYFGSPMSKGILQVDMWNI 592 (810)
Q Consensus 515 ~~~R~iGlGv~Glad~L~-~~gi~y-~S~ea~~l~~~i~e~i~~~a~~aS~eLAke~G~~~~f~~S~~~~G~l~~d~~~~ 592 (810)
-++-.+.||+.||++++. ..|-.+ .+++|.+|+.+|.++|+..+-+.+.+ .|---..+.+|.
T Consensus 520 ~~~~t~tiG~iGL~Ea~~~l~G~~~~~~~ea~~fa~~Il~~m~~~~~~~~~e----~G~~~~l~~tPA------------ 583 (735)
T PRK07111 520 LKQGTLGIGFIGLAETLVALTGKHHGESEEAQELGLKIVSHMRDFCDEYKEE----YKLNYSLLATPA------------ 583 (735)
T ss_pred hhcCceeeeHHHHHHHHHHhcCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHH----hCCCceEEEccc------------
Confidence 123356899999999986 478776 79999999999999999876655533 342100111111
Q ss_pred CCCCcccHHHHHHHHHhcCccccceeccCCCcchhhhcCCCccccccccceeeEEcccCceEEeCHHHHHHHHHcCCChH
Q 003575 593 TPSDRWDWSSLREMISKNGVRNSLLVAPMPTASTSQILGNNECFEPYTSNIYTRRVLSGEFIVVNKHLLKDLTELGLWSH 672 (810)
Q Consensus 593 ~~~~~~dW~~Lr~~i~~~G~RNs~l~AiaPT~stS~i~g~s~gieP~~s~~y~r~~~~g~~~~vn~~l~~~l~~~g~~~~ 672 (810)
...--.-.+.+-+++|+ +.|+++. |++.|-|.
T Consensus 584 ---Es~~~rfa~~D~~~fg~----------------i~g~~d~--~yYTNS~h--------------------------- 615 (735)
T PRK07111 584 ---EGLSGRFIKMDRKKFGE----------------IKGVTDK--EYYTNSFH--------------------------- 615 (735)
T ss_pred ---chhHHHHHHHHHHhcCC----------------CCCCCCC--Ccccccee---------------------------
Confidence 00000111344555663 0132211 34333221
Q ss_pred HHHHHHHhcCCccccccCCchHHHhhccccccCChHHHHHHHHHhCcccccccceeEeeCC---CChHHHHHHHHHHHHc
Q 003575 673 ALKTKIIYENGSVSKISEIPEELKAIYKTVWEIKQKTLVDMAADRGCYIDQSQSLNIHMEQ---PDHGKLTSLHFYAWSK 749 (810)
Q Consensus 673 ~~~~~i~~~~Gsv~~~~~lp~~~k~~y~tA~ei~~~~~i~~~a~~Q~~vDqs~S~nl~~~~---~~~~~l~~~~~~Awk~ 749 (810)
+| --.++++-+.|+..+..|++..-+...-+++++ ++.+.+.++..+|.+.
T Consensus 616 ------------------lp--------v~~~~~~~eki~~e~~~~~~~~GG~i~~v~l~~e~~~n~eal~~lvk~~~~~ 669 (735)
T PRK07111 616 ------------------VP--------VYYPISIFEKIEIEAPYHKLTNGGHISYVELDGDPSKNVEAFEIIVKAMKNT 669 (735)
T ss_pred ------------------ec--------CCCCCCHHHHHHhhcccccccCCeEEEEEEeCCccCCCHHHHHHHHHHHHhC
Confidence 11 123467788899999999999999999999984 4667788888888776
Q ss_pred CCce
Q 003575 750 GMKT 753 (810)
Q Consensus 750 GlKt 753 (810)
|+.=
T Consensus 670 ~i~Y 673 (735)
T PRK07111 670 NIGY 673 (735)
T ss_pred CCce
Confidence 6553
No 39
>PRK00464 nrdR transcriptional regulator NrdR; Validated
Probab=97.82 E-value=2e-05 Score=77.41 Aligned_cols=77 Identities=21% Similarity=0.340 Sum_probs=54.8
Q ss_pred CeEEccCCceeccChhHHHHHHHHHHhcCCCCCCCHHHHHHHHHhhcC----CCCCHHHHHHHHHHHHHhhccCCCChHH
Q 003575 1 MYVIKRDGRKEPVRFDKITARLKKLSYGLSKEHCDPVLVAQKVCAGVY----KGVTTTQLDELAAETAAAMTVNHPDYAL 76 (810)
Q Consensus 1 ~~v~krdG~~e~~~~~ki~~~i~~~~~~l~~~~v~~~~i~~~~~~~~~----~~itt~ei~~~~~~~a~~~~~~~p~y~~ 76 (810)
++|+||||+.++|+.+||...|.+|......+.-....++.+|...++ ++|+++|||+++.++.... .+=.|..
T Consensus 49 i~VIKRDG~~v~Fd~~KI~~AI~kA~~a~~~~~~~~~~i~~~V~~~l~~~~~~~IsveEIqDiVE~~L~~~--~~~ay~r 126 (154)
T PRK00464 49 LLVIKKDGRREPFDREKLRRGLRRACEKRPVSSEQIEAAVSRIERQLRASGEREVPSKEIGELVMEELKKL--DEVAYVR 126 (154)
T ss_pred cEEEecCCcCCCcCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHcCCCCCCHHHHHHHHHHHHHhc--CCEEEEE
Confidence 369999999999999999999999886643111223355666666665 4899999999988776433 3335555
Q ss_pred HHH
Q 003575 77 LAG 79 (810)
Q Consensus 77 lA~ 79 (810)
+|+
T Consensus 127 fa~ 129 (154)
T PRK00464 127 FAS 129 (154)
T ss_pred hhh
Confidence 554
No 40
>TIGR02487 NrdD anaerobic ribonucleoside-triphosphate reductase. This model represents the oxygen-sensitive (anaerobic, class III) ribonucleotide reductase. The mechanism of the enzyme involves a glycine-centered radical, a C-terminal zinc binding site, and a set of conserved active site cysteines and asparagines. This enzyme requires an activating component, NrdG, a radical-SAM domain containing enzyme (TIGR02491). Together the two form an alpha-2/beta-2 heterodimer.
Probab=97.69 E-value=0.0035 Score=74.70 Aligned_cols=251 Identities=21% Similarity=0.280 Sum_probs=148.8
Q ss_pred HHHHHHHHHHHhhCCceeEechhhhhhCCCCCCCeEEeecCCcccccc--------CCCCCceeeeccccCchhhhhccC
Q 003575 388 KLWFEILNSQIETGTPYMLFKDSCNRKSNQQNLGTIKSSNLCTEIVEF--------SSPEETAVCNLASIALPRYVREKG 459 (810)
Q Consensus 388 ~l~~~I~~~~~etG~P~i~f~D~~Nr~~~~~~~g~I~~sNlC~EI~~~--------~~~~e~~~CNL~SInL~~~v~~~~ 459 (810)
++++.+++...++|.|++++.|+.-.. .|.+.++ =|+-..+- ..+.-.+...+.+|||++.-...
T Consensus 233 d~~~~a~~~~ak~~~P~f~n~~~~~~~-----~~~~~~~-MgCR~~l~~~~~~~~~~~~~~~Gn~gvvTiNLpRiA~~a- 305 (579)
T TIGR02487 233 DLFELAFECAAKRGYPYFLNLDPEDNV-----KEDVRYP-MGCRTFLSPNENGDGEESYIGRGNIGVTSINLPRIAYKS- 305 (579)
T ss_pred HHHHHHHHHHHHhCCCCcccchhhhcc-----CCCeecc-CCCcccccceecCCCCccCcccceeeeEEcchHHHHHHh-
Confidence 799999999999999999987643211 1222211 23322111 01122344456699999986531
Q ss_pred CccccccccccccCCCCCccCCHHHHHHHHHHHHHHHHHHHh------cCCCChHHHH---HH----------hhccCCc
Q 003575 460 VPVQSNVSKLVGSRDSKNRLFDFERLAEVTKIITENLNKIID------VNHYPIETTR---RS----------NLRHRPI 520 (810)
Q Consensus 460 ~~~~~~~~~~~g~~~~~~~~fD~~~l~~~v~~avr~LD~vId------~~~~p~~~~~---~~----------~~~~R~i 520 (810)
.++...| |+.|.+.+.++.+.|..=.+ ...+|.--.. .. ..++-.+
T Consensus 306 --------------~~d~~~F-~~~L~~~l~l~~~~L~~r~~~l~~~~~~~~p~~~~~~~~~~~~~~~~~i~~~~~~~~~ 370 (579)
T TIGR02487 306 --------------RGDEEEF-FEELDEYLEIAKEALEIRREYLKKMLAKDLPPMYSQGGWDGGNLLDESVEEILKSGTN 370 (579)
T ss_pred --------------CCCHHHH-HHHHHHHHHHHHHHHHHHHHHHHhhhhccCCHHHHhccccccccccchHHHHhhcCee
Confidence 0111112 45777777777766653332 1234443211 00 0234567
Q ss_pred eeecchHHHHHH-HcCCC-CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCCCCCCccccCccccccccCCCCCcc
Q 003575 521 GIGIQGLADTFI-LLGLP-FESPEAQQLNKDIFETIYYHALKASAELAVKDGPYETYFGSPMSKGILQVDMWNITPSDRW 598 (810)
Q Consensus 521 GlGv~Glad~L~-~~gi~-y~S~ea~~l~~~i~e~i~~~a~~aS~eLAke~G~~~~f~~S~~~~G~l~~d~~~~~~~~~~ 598 (810)
-||+.||++++. .+|.. .+|++|.+|+.+|.++|+..+.+.+. |.|--=+.+.+|. ...
T Consensus 371 siG~iGL~Ea~~~l~G~~~~~~~~a~~f~~~Il~~m~~~~~~~~~----e~g~~~~l~~TPA---------------Es~ 431 (579)
T TIGR02487 371 SIGFIGLNEALVALTGKHLHEEEEARELAIRILEFIRDKADEFKK----ETGLNYSVYATPA---------------ESL 431 (579)
T ss_pred eeehhhHHHHHHHhcCCCcCCCHHHHHHHHHHHHHHHHHHHHHHH----HHCCceEEEECCc---------------chH
Confidence 899999999987 68887 47899999999999999988776663 3342111111211 000
Q ss_pred cHHHHHHHHHhcCccccceeccCCCcchhhhcCCCccccccccceeeEEcccCceEEeCHHHHHHHHHcCCChHHHHHHH
Q 003575 599 DWSSLREMISKNGVRNSLLVAPMPTASTSQILGNNECFEPYTSNIYTRRVLSGEFIVVNKHLLKDLTELGLWSHALKTKI 678 (810)
Q Consensus 599 dW~~Lr~~i~~~G~RNs~l~AiaPT~stS~i~g~s~gieP~~s~~y~r~~~~g~~~~vn~~l~~~l~~~g~~~~~~~~~i 678 (810)
--.-.+.+-+++|.. | |.+.- |+++|-|.
T Consensus 432 ~~rfa~~D~~~fg~i--------~--------gv~d~--~yYTNS~h--------------------------------- 460 (579)
T TIGR02487 432 CGRFAKKDREEFGEI--------P--------GVTDK--PYYTNSFH--------------------------------- 460 (579)
T ss_pred HHHHHHHHHHHcCCC--------C--------CCCCC--CcCCCCEe---------------------------------
Confidence 001113344456631 1 11111 33333211
Q ss_pred HhcCCccccccCCchHHHhhccccccCChHHHHHHHHHhCcccccccceeEeeCC--CChHHHHHHHHHHHHcC
Q 003575 679 IYENGSVSKISEIPEELKAIYKTVWEIKQKTLVDMAADRGCYIDQSQSLNIHMEQ--PDHGKLTSLHFYAWSKG 750 (810)
Q Consensus 679 ~~~~Gsv~~~~~lp~~~k~~y~tA~ei~~~~~i~~~a~~Q~~vDqs~S~nl~~~~--~~~~~l~~~~~~Awk~G 750 (810)
+| --.++++-+.|+..+..|++..-+...-+++++ .+.+.+.++..+|.+.|
T Consensus 461 ------------ip--------v~~~~~~~eki~~e~~f~~~~~GG~i~~v~l~e~~~n~eal~~lv~~a~~~~ 514 (579)
T TIGR02487 461 ------------VP--------VYEDVNLGEKIDIEAPFHPLTNGGHITYIELDEAIPDPEALKDITKKAMKNG 514 (579)
T ss_pred ------------eC--------CCCCCCHHHHHHhhcchhcccCCceEEEEEcCCCCCCHHHHHHHHHHHHhcC
Confidence 11 123467788899999999999999999999985 46789999999999987
No 41
>PRK10977 hypothetical protein; Provisional
Probab=97.67 E-value=0.0034 Score=73.19 Aligned_cols=258 Identities=17% Similarity=0.184 Sum_probs=159.8
Q ss_pred eHHHHHHHHHHHHHhhCCceeEechhhhhhCC-CCCCCeEEeecCCccccccCCCCCceeee--ccccCchhhhhccCCc
Q 003575 385 SARKLWFEILNSQIETGTPYMLFKDSCNRKSN-QQNLGTIKSSNLCTEIVEFSSPEETAVCN--LASIALPRYVREKGVP 461 (810)
Q Consensus 385 ~Ar~l~~~I~~~~~etG~P~i~f~D~~Nr~~~-~~~~g~I~~sNlC~EI~~~~~~~e~~~CN--L~SInL~~~v~~~~~~ 461 (810)
+..+++++.+++...+|.|.+++- .++...- ....|.+ =|.|-+ + .+-|| +.+|||++.-...
T Consensus 190 tp~d~l~~A~e~~~~~g~P~f~Nd-~~~i~~~~a~~ygi~----gC~~~l-~-----~g~GsigvVTINLpRIA~~a--- 255 (509)
T PRK10977 190 TPDDLLLLAAKNICECSKPHIANH-PVHDKDFTKGGYGIV----SCYNSL-P-----LGGGAYTLVRLNLKEVAKRA--- 255 (509)
T ss_pred CCHHHHHHHHHHHhccCCCceecC-HhHHHhhcccCCcee----eeeccC-C-----CCcCCceeEEeeHHHHHHHC---
Confidence 348999999999999999999884 4433321 1224444 354443 1 23455 5589999976431
Q ss_pred cccccccccccCCCCCccCCHHHHHHHHHHHHHHHHH----HHhc-CCCChHHHHHHh--hccCCc-eeecchHHHHHHH
Q 003575 462 VQSNVSKLVGSRDSKNRLFDFERLAEVTKIITENLNK----IIDV-NHYPIETTRRSN--LRHRPI-GIGIQGLADTFIL 533 (810)
Q Consensus 462 ~~~~~~~~~g~~~~~~~~fD~~~l~~~v~~avr~LD~----vId~-~~~p~~~~~~~~--~~~R~i-GlGv~Glad~L~~ 533 (810)
.+...|=.+.|.+.+.++...|+. +.+. +.||++-..+.- ...|-. -+|+.|||+++..
T Consensus 256 -------------~~~e~F~~~~L~~~~~l~~e~l~~R~~~l~e~~~~~~~~fL~~eg~~~~d~f~~tiGiiGLaEav~~ 322 (509)
T PRK10977 256 -------------ESVDDFFDNVLPHYCQQMIEIIDARIRFLVEESNFFESSFLVKEGLIDPERFTPMFGIYGLAEAVNL 322 (509)
T ss_pred -------------CChHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccCCCchHhhcCCccccccccCccHhHHHHHHHH
Confidence 111223334677778888777765 2322 457743211100 122222 4999999999886
Q ss_pred c----CCC--CC-CHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCC-CCCCCCCccccCccccccccCCCCCcccHHHHHH
Q 003575 534 L----GLP--FE-SPEAQQLNKDIFETIYYHALKASAELAVKDGP-YETYFGSPMSKGILQVDMWNITPSDRWDWSSLRE 605 (810)
Q Consensus 534 ~----gi~--y~-S~ea~~l~~~i~e~i~~~a~~aS~eLAke~G~-~~~f~~S~~~~G~l~~d~~~~~~~~~~dW~~Lr~ 605 (810)
+ |.. |+ |+||.+|+.+|.++|+.. +++.|. | .+. | ..++
T Consensus 323 l~g~~g~~~~~g~seea~~l~~~Il~~m~~~--------~~e~~~~Y-g~~------~-----------------Rf~~- 369 (509)
T PRK10977 323 LLEKEGLAARYGKDEAANELGYRISAQLAEI--------VENTPVKY-GWG------G-----------------RALL- 369 (509)
T ss_pred HhcCCCcccCcCCCHHHHHHHHHHHHHHHHH--------HHHhCCcc-Chh------h-----------------HHHH-
Confidence 6 333 43 899999999999999943 334442 2 000 0 0011
Q ss_pred HHHhcCccccceeccCCCcchhhhcCCCccccccccceeeEEcccCceEEeCHHHHHHHHHcCCChHHHHHHHHhcCCcc
Q 003575 606 MISKNGVRNSLLVAPMPTASTSQILGNNECFEPYTSNIYTRRVLSGEFIVVNKHLLKDLTELGLWSHALKTKIIYENGSV 685 (810)
Q Consensus 606 ~i~~~G~RNs~l~AiaPT~stS~i~g~s~gieP~~s~~y~r~~~~g~~~~vn~~l~~~l~~~g~~~~~~~~~i~~~~Gsv 685 (810)
..+.|+ +.. -+.|+|++
T Consensus 370 -~~q~G~-------------~~d-~~yTns~h------------------------------------------------ 386 (509)
T PRK10977 370 -HAQSGI-------------SSD-KGVTPGVR------------------------------------------------ 386 (509)
T ss_pred -HHHhCC-------------CCC-CCccCCeE------------------------------------------------
Confidence 011111 000 02333331
Q ss_pred ccccCCchHHHhhccccccCChHHHHHHHHHhCcccccccceeEeeCC---CChHHHHHHHHHHHHcCCceEEEEecCcc
Q 003575 686 SKISEIPEELKAIYKTVWEIKQKTLVDMAADRGCYIDQSQSLNIHMEQ---PDHGKLTSLHFYAWSKGMKTGMYYLRTRA 762 (810)
Q Consensus 686 ~~~~~lp~~~k~~y~tA~ei~~~~~i~~~a~~Q~~vDqs~S~nl~~~~---~~~~~l~~~~~~Awk~GlKt~~yY~r~~~ 762 (810)
+| --.++++-++|+..|..|+|..-+.+.-+++.. .+++.+.++-..|.+.|+.=.+.+.-...
T Consensus 387 -----iP--------V~~e~d~~eki~~ea~~h~~~tGG~i~i~~ld~~~~~NpeAl~~lvk~a~~~gi~Yfsin~~~~d 453 (509)
T PRK10977 387 -----IP--------YGDEPDPITHLQTSAPHHKYYPSGISDILTFDETIKRNPQALVDLCKGAFKAGMREFTANVSGND 453 (509)
T ss_pred -----ec--------CCCCCCHHHHHHhhcccCCccCCceEEEEEecCCCCCCHHHHHHHHHHHHhCCCCEEEEEccCCc
Confidence 11 123467788999999999999999988888853 46788999999999999998888888888
Q ss_pred cccccccccccccccc
Q 003575 763 AADAIKFTVDTSVLNN 778 (810)
Q Consensus 763 ~~~~~~~~~~~~~~~~ 778 (810)
--+...+.|..+.+..
T Consensus 454 ~vrvtgy~~~~s~~~~ 469 (509)
T PRK10977 454 LVRVTGYMVKLSDIEK 469 (509)
T ss_pred eEEEEeEEeeHHHHHH
Confidence 8788788776665443
No 42
>cd01675 RNR_III Class III ribonucleotide reductase. Ribonucleotide reductase (RNR) catalyzes the reductive synthesis of deoxyribonucleotides from their corresponding ribonucleotides. It provides the precursors necessary for DNA synthesis. RNRs are separated into three classes based on their metallocofactor usage. Class I RNRs, found in eukaryotes, bacteria, and bacteriophage, use a diiron-tyrosyl radical. Class II RNRs, found in bacteria, bacteriophage, algae and archaea, use coenzyme B12 (adenosylcobalamin, AdoCbl). Class III RNRs, found in strict or facultative anaerobic bacteria, bacteriophage, and archaea, use an FeS cluster and S-adenosylmethionine to generate a glycyl radical. Many organisms have more than one class of RNR present in their genomes. All three RNRs have a ten-stranded alpha-beta barrel domain that is structurally similar to the domain of PFL (pyruvate formate lyase). The class III enzyme from phage T4 consists of two subunits, this model covers the larger subunit w
Probab=97.54 E-value=0.0043 Score=73.60 Aligned_cols=254 Identities=21% Similarity=0.290 Sum_probs=151.0
Q ss_pred HHHHHHHHHHHHHhhCCceeEechhhhhhCCCCCCCeEEeecCCccccc-----------cCCCCCceeeeccccCchhh
Q 003575 386 ARKLWFEILNSQIETGTPYMLFKDSCNRKSNQQNLGTIKSSNLCTEIVE-----------FSSPEETAVCNLASIALPRY 454 (810)
Q Consensus 386 Ar~l~~~I~~~~~etG~P~i~f~D~~Nr~~~~~~~g~I~~sNlC~EI~~-----------~~~~~e~~~CNL~SInL~~~ 454 (810)
-.++++.+++++.+.|.|+++|.+..- .. .|.+. -=|+-..+ ...+.-++...+.+|||++.
T Consensus 228 ~~d~~~~~~~~~~k~~~p~f~n~~~~~--~~---~~~~~--~mcCR~~l~~~~~~~~~~~~~~~~~~Gs~~vvTiNLpRi 300 (555)
T cd01675 228 NYDLKELAFECAAKRGYPYFLNFDNSD--NV---PGDVR--AMGCRLFLDKNELKRGGGLEGSGDGTGNIGVVTINLPRI 300 (555)
T ss_pred chHHHHHHHHHHHHHCCCCcccccccc--cc---CCCcc--cccCccccchhhhcccCCCCccCcccceeeeEEechHHH
Confidence 457788999999999999999876631 11 12111 12331111 11222345667779999998
Q ss_pred hhccCCccccccccccccCCCCCccCCHHHHHHHHHHHHHHHHHH-------HhcCCCChHHHHHHh------hccCCce
Q 003575 455 VREKGVPVQSNVSKLVGSRDSKNRLFDFERLAEVTKIITENLNKI-------IDVNHYPIETTRRSN------LRHRPIG 521 (810)
Q Consensus 455 v~~~~~~~~~~~~~~~g~~~~~~~~fD~~~l~~~v~~avr~LD~v-------Id~~~~p~~~~~~~~------~~~R~iG 521 (810)
.... .++...| |+.|.+.+.++.+.|+.= +....+|+-...... ..+-..-
T Consensus 301 a~~a---------------~~d~~~F-~~~L~~~l~l~~~~l~~r~~~l~~~~~~~~~~l~~~g~~~~~~~~~~~~~~~t 364 (555)
T cd01675 301 AYEA---------------RGDEEKF-FELLDEYLELAKDALEIRRKRLKEALARGLPPLYQEGLGGGKLLFILKRHTLT 364 (555)
T ss_pred HHHh---------------cCCHHHH-HHHHHHHHHHHHHHHHHHHHHHHHhhhcCCCHHHHcCcccccceecCCCeEEe
Confidence 7531 0111112 456777777776544432 233445654332222 3445577
Q ss_pred eecchHHHHHHH-cCCCCC-CHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCCCCCCccccCccccccccCCCCCccc
Q 003575 522 IGIQGLADTFIL-LGLPFE-SPEAQQLNKDIFETIYYHALKASAELAVKDGPYETYFGSPMSKGILQVDMWNITPSDRWD 599 (810)
Q Consensus 522 lGv~Glad~L~~-~gi~y~-S~ea~~l~~~i~e~i~~~a~~aS~eLAke~G~~~~f~~S~~~~G~l~~d~~~~~~~~~~d 599 (810)
||+.||++++.. .|-..+ +++|.+|+.+|.++|+..+-+.+ +|.|--=+.+.+|. ...-
T Consensus 365 iG~iGL~Ea~~~l~g~~~~~~~~~~~f~~~il~~m~~~~~~~~----~e~g~~~~l~~tPa---------------Es~~ 425 (555)
T cd01675 365 IGFIGLNEAAEALTGKGIGESEEAREFGIRILEHIRERADEFK----EETGLLYSVEATPA---------------ESLA 425 (555)
T ss_pred EEEehHHHHHHHhcCCCCCCCHHHHHHHHHHHHHHHHHHHHHH----HHHCCceEEEEccc---------------chHH
Confidence 999999998864 555554 99999999999999998877666 44442111122221 0000
Q ss_pred HHHHHHHHHhcC-ccccceeccCCCcchhhhcCCCccccccccceeeEEcccCceEEeCHHHHHHHHHcCCChHHHHHHH
Q 003575 600 WSSLREMISKNG-VRNSLLVAPMPTASTSQILGNNECFEPYTSNIYTRRVLSGEFIVVNKHLLKDLTELGLWSHALKTKI 678 (810)
Q Consensus 600 W~~Lr~~i~~~G-~RNs~l~AiaPT~stS~i~g~s~gieP~~s~~y~r~~~~g~~~~vn~~l~~~l~~~g~~~~~~~~~i 678 (810)
=.-.+.+-+++| + +-|.+. .|++.|-+.
T Consensus 426 ~rfa~~D~~~~g~i----------------~~g~~d--~~yyTNS~h--------------------------------- 454 (555)
T cd01675 426 YRFAKKDRKKYGDI----------------IPGVTD--KPYYTNSFH--------------------------------- 454 (555)
T ss_pred HHHHHHHHHHcCcc----------------CCCCCC--CCCCCCCEE---------------------------------
Confidence 011134445666 2 122221 122222111
Q ss_pred HhcCCccccccCCchHHHhhccccccCChHHHHHHHHHhCcccccccceeEeeCC--CChHHHHHHHHHHHHcCCc
Q 003575 679 IYENGSVSKISEIPEELKAIYKTVWEIKQKTLVDMAADRGCYIDQSQSLNIHMEQ--PDHGKLTSLHFYAWSKGMK 752 (810)
Q Consensus 679 ~~~~Gsv~~~~~lp~~~k~~y~tA~ei~~~~~i~~~a~~Q~~vDqs~S~nl~~~~--~~~~~l~~~~~~Awk~GlK 752 (810)
+| --.++++-+.|+..+..|++.+-+...-+++++ ++++.+.++..+|.+.|+.
T Consensus 455 ------------ip--------v~~~~~~~eki~~e~~f~~~~~GG~i~hv~l~e~~~n~~al~~lv~~a~~~~~~ 510 (555)
T cd01675 455 ------------VP--------VYEDIDPFEKIDIEAKLHPLTTGGHILHIELGEAKPNPEALEALVKKAAKRGVI 510 (555)
T ss_pred ------------ee--------CCCCCCHHHHHHhhcccccccCCceEEEEECCCCCCCHHHHHHHHHHHHHcCCc
Confidence 11 123466777899999999999999999999986 4788999999999997754
No 43
>PF13597 NRDD: Anaerobic ribonucleoside-triphosphate reductase; PDB: 1HK8_A 1H78_A 1H7A_A 1H79_A 1H7B_A.
Probab=97.31 E-value=0.0032 Score=74.48 Aligned_cols=241 Identities=18% Similarity=0.229 Sum_probs=119.2
Q ss_pred eHHHHHHHHHHHHHhhCCceeEechhhhhhCCCCCCCeEEeecCCccccccCC---------CCCceeeecc--ccCchh
Q 003575 385 SARKLWFEILNSQIETGTPYMLFKDSCNRKSNQQNLGTIKSSNLCTEIVEFSS---------PEETAVCNLA--SIALPR 453 (810)
Q Consensus 385 ~Ar~l~~~I~~~~~etG~P~i~f~D~~Nr~~~~~~~g~I~~sNlC~EI~~~~~---------~~e~~~CNL~--SInL~~ 453 (810)
+..+||+..++...+.+.|++.+...-....+. |+-..+... ......+|++ +|||++
T Consensus 224 ~~~~l~~~a~k~~~~~~~p~~~~~~~~~~~~~M-----------cCR~~l~~~~~~~~~~~~~~~~~~GnigvVTINLPR 292 (546)
T PF13597_consen 224 PNYDLFELAAKCGAKRFYPDFNSDLDPDDVRSM-----------CCRLRLSLNELGNGGGLFGSGDGTGNIGVVTINLPR 292 (546)
T ss_dssp TTHHHHHHHHHHHHHHS--EEEEHHHHHH---B-----------TTTB-----B-TTS-B-----TT-BEEEEEEEEHHH
T ss_pred chHHHHHHHHHHhHHhCCCCeecCCCCcceecc-----------ccccccChhhhccCCcceeccccccceeEEEecHHH
Confidence 457999999999999999999755533222211 221111000 0012345555 899999
Q ss_pred hhhccCCccccccccccccCCCCCccCCHHHHHHHHHHHHH-HHHHHHhcCCCChHHHHHHhhccCCceeecchHHHHHH
Q 003575 454 YVREKGVPVQSNVSKLVGSRDSKNRLFDFERLAEVTKIITE-NLNKIIDVNHYPIETTRRSNLRHRPIGIGIQGLADTFI 532 (810)
Q Consensus 454 ~v~~~~~~~~~~~~~~~g~~~~~~~~fD~~~l~~~v~~avr-~LD~vId~~~~p~~~~~~~~~~~R~iGlGv~Glad~L~ 532 (810)
+.-.. .++..| |.+|.+. .++.| .+.+.++.+.||.-.......++-..-||+.||++++.
T Consensus 293 iA~~a----------------~~d~~~-f~~L~~~-~~~~r~~i~~~~~~~~~P~~~~~~~~~~~~~~tIG~iGL~Ea~~ 354 (546)
T PF13597_consen 293 IAYEA----------------KGDEDF-FEELDKL-MLAKRKVIKKLLEAGLYPFTKQYLWRLKNHFSTIGIIGLNEALQ 354 (546)
T ss_dssp HHHTT----------------EE-HHH-HHHHHHH-HHHHHHHHHHHHHGGG-HHHHTST-SHTTTTSEEEEE-HHHHHH
T ss_pred HHHHh----------------CCcHHH-HHHHHHH-HHHHHHHHHhhccCCcCchhHhhHhhhcCeeEeecHHHHHHHHH
Confidence 86431 111111 4455443 33333 56667777888874433333456677899999999999
Q ss_pred HcCCC-CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCCCCCCccccCccccccccCCCCCcccHHHHHHHHHhcC
Q 003575 533 LLGLP-FESPEAQQLNKDIFETIYYHALKASAELAVKDGPYETYFGSPMSKGILQVDMWNITPSDRWDWSSLREMISKNG 611 (810)
Q Consensus 533 ~~gi~-y~S~ea~~l~~~i~e~i~~~a~~aS~eLAke~G~~~~f~~S~~~~G~l~~d~~~~~~~~~~dW~~Lr~~i~~~G 611 (810)
.+|-. .+++||.+|+.+|.++|...+.+.+ +|. |
T Consensus 355 ~~g~~~~~~~~~~~f~~~Vl~~m~~~~~~~~----~e~-----------------------------------------g 389 (546)
T PF13597_consen 355 NFGGKHHESPEGREFALKVLEHMRDKADEFQ----EET-----------------------------------------G 389 (546)
T ss_dssp HH---------TS--HHHHHHHHHHHHHHHH----HHH-----------------------------------------S
T ss_pred HHHHhcccHHHHHHHHHHHHHHHHHHHHHHH----HHH-----------------------------------------C
Confidence 87766 4789999999999999997665443 333 3
Q ss_pred ccccceeccCCCcchhhhcCCCccccccccceeeEEcccCceEEeCHHHHHHHHHcCCChHHHHHHHHhcCCccccccCC
Q 003575 612 VRNSLLVAPMPTASTSQILGNNECFEPYTSNIYTRRVLSGEFIVVNKHLLKDLTELGLWSHALKTKIIYENGSVSKISEI 691 (810)
Q Consensus 612 ~RNs~l~AiaPT~stS~i~g~s~gieP~~s~~y~r~~~~g~~~~vn~~l~~~l~~~g~~~~~~~~~i~~~~Gsv~~~~~l 691 (810)
+.-+ +--.|++|+|-- ....|.++ |+. ...+-..+--.+
T Consensus 390 ~~f~--le~TPAEs~~~r-----------------------------fak~D~~~-g~i---------~~~~yytNs~h~ 428 (546)
T PF13597_consen 390 LLFN--LEATPAESLCYR-----------------------------FAKLDKEK-GII---------TDRDYYTNSFHL 428 (546)
T ss_dssp -EEE--EEE---TTHHHH-----------------------------HHHHHHHH-------------TTTSS---TT--
T ss_pred CCEE--EEECchhHHHHH-----------------------------HHHHHHhc-CCc---------CCCCcccCCEEc
Confidence 3222 222455555420 01111111 200 000000000001
Q ss_pred chHHHhhccccccCChHHHHHHHHHhCcccccccceeEeeCC-CChHHHHHHHHHHHH
Q 003575 692 PEELKAIYKTVWEIKQKTLVDMAADRGCYIDQSQSLNIHMEQ-PDHGKLTSLHFYAWS 748 (810)
Q Consensus 692 p~~~k~~y~tA~ei~~~~~i~~~a~~Q~~vDqs~S~nl~~~~-~~~~~l~~~~~~Awk 748 (810)
| .-.++++.+-++..+..|++..-+--.-+++++ ++.+.+.++..+|.+
T Consensus 429 p--------v~~~~~~~ek~~~E~~~~~~~~GG~I~hv~l~e~~n~~al~~lv~~~~~ 478 (546)
T PF13597_consen 429 P--------VDEDIDPFEKIDLEAPFQKLYTGGHIFHVELGEKPNPEALEKLVRYAME 478 (546)
T ss_dssp ---------TTS---HHHHHHHHHHHHTTSTTB--EEEE----T-HHHHHHHHHHHHH
T ss_pred C--------CCCCCCHHHHHHhhcccccccCCceEEEEEcCCCCCHHHHHHHHHHHHH
Confidence 1 123467777888999999999999999999986 566788888888887
No 44
>PRK14704 anaerobic ribonucleoside triphosphate reductase; Provisional
Probab=97.30 E-value=0.019 Score=68.72 Aligned_cols=260 Identities=17% Similarity=0.202 Sum_probs=152.3
Q ss_pred eHHHHHHHHHHHHHhhCCceeEechhh-hhhCCCCCCC-eEEeecCCccccccCC----CCCceeee--ccccCchhhhh
Q 003575 385 SARKLWFEILNSQIETGTPYMLFKDSC-NRKSNQQNLG-TIKSSNLCTEIVEFSS----PEETAVCN--LASIALPRYVR 456 (810)
Q Consensus 385 ~Ar~l~~~I~~~~~etG~P~i~f~D~~-Nr~~~~~~~g-~I~~sNlC~EI~~~~~----~~e~~~CN--L~SInL~~~v~ 456 (810)
|..+||+..+++..+.+.|.++|.|.. |........+ .+. -=|+-..+..+ ....+.+| +.+|||++.--
T Consensus 259 p~~~l~~la~~~~~kr~~p~f~~~~~~~n~~~~~g~~~~~~~--~MgCR~~l~~~~~G~~~~~g~GnigvVTINLPRIA~ 336 (618)
T PRK14704 259 PNYDLFELALETTAERLFPNFSFLDAPFNAVHYDGRPESEVC--YMGCRTRVMSNIHGEETAIGRGNLSFTSINLVKLAL 336 (618)
T ss_pred chHHHHHHHHHHhcCcCCcceeccccccchhhhcCCCCcccc--cCcccceeccccCCCcCCCccceeeeEEeeHHHHHH
Confidence 567899999999999999999999853 2110000001 110 11222111110 01123444 55899999864
Q ss_pred ccCCccccccccccccCCCCCccCCHHHHHHHHHHHHHHHHHHHh------cCCCChHHHHHH---h------------h
Q 003575 457 EKGVPVQSNVSKLVGSRDSKNRLFDFERLAEVTKIITENLNKIID------VNHYPIETTRRS---N------------L 515 (810)
Q Consensus 457 ~~~~~~~~~~~~~~g~~~~~~~~fD~~~l~~~v~~avr~LD~vId------~~~~p~~~~~~~---~------------~ 515 (810)
.. ++...| |+.|.+.+.++.+.|+.-++ ...+|.--..-. . .
T Consensus 337 ~a----------------~d~e~F-~~~L~~~l~l~~~~L~~R~~~l~~~~~~~~P~l~~~g~~~~~~~l~~~~~~~~~~ 399 (618)
T PRK14704 337 IS----------------GSKEAF-FEALNYYLDLGIKQLLERFEYQCTKRARDFRFLYSQGVWRGGEKLQPEDSVASIL 399 (618)
T ss_pred HC----------------CCHHHH-HHHHHHHHHHHHHHHHHHHHHHHhcccccCCHHHHCcccccccccCCCcchhhhc
Confidence 31 111112 45677777787776655332 223454211100 0 0
Q ss_pred ccCCceeecchHHHHHH-HcCCCC-CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCCCCCCccccCccccccccCC
Q 003575 516 RHRPIGIGIQGLADTFI-LLGLPF-ESPEAQQLNKDIFETIYYHALKASAELAVKDGPYETYFGSPMSKGILQVDMWNIT 593 (810)
Q Consensus 516 ~~R~iGlGv~Glad~L~-~~gi~y-~S~ea~~l~~~i~e~i~~~a~~aS~eLAke~G~~~~f~~S~~~~G~l~~d~~~~~ 593 (810)
++-.+-||+.||++++. ..|-.+ .|+||.+|+.+|.++|+..+.+.+ +|.|--=+.+.+|.
T Consensus 400 ~~~t~siG~iGL~Ea~~~l~G~~~~~~~ea~~fa~~Il~~m~~~~~~~~----~e~g~~~nl~~TPA------------- 462 (618)
T PRK14704 400 KQGTLSLGFIGLAECLVALTGKHHGEDEESWKLGYEIISFMRDRMDKAT----EEHELNFSVIATPA------------- 462 (618)
T ss_pred ccceeeeeHHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHHHHHHHHHHH----HHHCCCceeeeccc-------------
Confidence 12235799999999875 577776 799999999999999998777655 44553222223322
Q ss_pred CCCcccHHHHHHHHHhcCccccceeccCCCcchhhhcCCCccccccccceeeEEcccCceEEeCHHHHHHHHHcCCChHH
Q 003575 594 PSDRWDWSSLREMISKNGVRNSLLVAPMPTASTSQILGNNECFEPYTSNIYTRRVLSGEFIVVNKHLLKDLTELGLWSHA 673 (810)
Q Consensus 594 ~~~~~dW~~Lr~~i~~~G~RNs~l~AiaPT~stS~i~g~s~gieP~~s~~y~r~~~~g~~~~vn~~l~~~l~~~g~~~~~ 673 (810)
...--.-.+.+-+++|+ +.|+++ +|++.|-|.
T Consensus 463 --Es~~~Rfa~~D~~~fg~----------------i~gv~d--~~YYTNS~h---------------------------- 494 (618)
T PRK14704 463 --EGLSGKFVKKDREEFGV----------------ISGITN--HNYYTNSFH---------------------------- 494 (618)
T ss_pred --ccHHHHHHHHHHHhCCC----------------cCCCCC--CCcccCcee----------------------------
Confidence 10011223444556653 124433 456555432
Q ss_pred HHHHHHhcCCccccccCCchHHHhhccccccCChHHHHHHHHHhCcccccccceeEeeC-C--CChHHHHHHHHHHHHcC
Q 003575 674 LKTKIIYENGSVSKISEIPEELKAIYKTVWEIKQKTLVDMAADRGCYIDQSQSLNIHME-Q--PDHGKLTSLHFYAWSKG 750 (810)
Q Consensus 674 ~~~~i~~~~Gsv~~~~~lp~~~k~~y~tA~ei~~~~~i~~~a~~Q~~vDqs~S~nl~~~-~--~~~~~l~~~~~~Awk~G 750 (810)
+| --.++++-+.|+..+..|++..-+...-++++ + ++.+.+.++..+|.+.|
T Consensus 495 -----------------ip--------V~~~~~~~eki~~e~~fh~~~~GG~I~hv~l~~~~~~n~~Al~~lvk~~~~~~ 549 (618)
T PRK14704 495 -----------------IP--------VYYNIQAINKIRLEGPFHALCNGGHITYIELDGAAMHNKKALKQIVQAMAEHG 549 (618)
T ss_pred -----------------cc--------CCCCCCHHHHHHhhcccccccCCeEEEEEEECCccCCCHHHHHHHHHHHHhcC
Confidence 11 12346778889999999999999999999995 4 47788888888888765
Q ss_pred Cce
Q 003575 751 MKT 753 (810)
Q Consensus 751 lKt 753 (810)
+.=
T Consensus 550 i~Y 552 (618)
T PRK14704 550 VGY 552 (618)
T ss_pred Cce
Confidence 543
No 45
>PRK08271 anaerobic ribonucleoside triphosphate reductase; Provisional
Probab=97.26 E-value=0.0097 Score=71.02 Aligned_cols=106 Identities=25% Similarity=0.362 Sum_probs=76.6
Q ss_pred CceeeeccccCchhhhhccCCccccccccccccCCCCCccCCHHHHHHHHHHHHH-------HHHHHHhcCCCChHHHHH
Q 003575 440 ETAVCNLASIALPRYVREKGVPVQSNVSKLVGSRDSKNRLFDFERLAEVTKIITE-------NLNKIIDVNHYPIETTRR 512 (810)
Q Consensus 440 e~~~CNL~SInL~~~v~~~~~~~~~~~~~~~g~~~~~~~~fD~~~l~~~v~~avr-------~LD~vId~~~~p~~~~~~ 512 (810)
-+++++-.+|||++.--.. .+...| |+.|.+.+.++.+ .|...+..+.+|+-...-
T Consensus 347 ~tGSigVVTINLPRia~~a----------------~~~~~F-~e~Ld~~lela~~~l~~~R~~l~~~~~~~~~P~~~~~~ 409 (623)
T PRK08271 347 NTGSINVITINLPRIAQEA----------------RDRDDF-LEILRERVDKIHKYQLAYREIMEERIAAGMLPLYDAGF 409 (623)
T ss_pred ccCCcceEEccHHHHHHHc----------------CCHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHhcCCChHHHhhh
Confidence 3567778899999986431 111112 4667776666654 355567778888755433
Q ss_pred HhhccCCceeecchHHHHHHHcCCC-CCCHHHHHHHHHHHHHHHHHHHHHH
Q 003575 513 SNLRHRPIGIGIQGLADTFILLGLP-FESPEAQQLNKDIFETIYYHALKAS 562 (810)
Q Consensus 513 ~~~~~R~iGlGv~Glad~L~~~gi~-y~S~ea~~l~~~i~e~i~~~a~~aS 562 (810)
...+..-+-||+.||++++..+|.. .+++||.+|+.+|.++|+..+.+.+
T Consensus 410 ~~l~~~f~TIGiiGl~Ea~~~~G~~~~~~~e~~~f~~~il~~mr~~~~~~~ 460 (623)
T PRK08271 410 ISLDKQFLTIGINGMVEAAEFMGLTVGYNEEYKDFVQEVLKVIYEANEKAS 460 (623)
T ss_pred cccccceEeeeHhhHHHHHHHhCCCCCCCHHHHHHHHHHHHHHHHHHHHHH
Confidence 2234444799999999999988988 7899999999999999998877666
No 46
>TIGR00244 transcriptional regulator NrdR. Members of this almost entirely bacterial family contain an ATP cone domain (PFAM:PF03477). There is never more than one member per genome. Common gene symbols given include nrdR, ybaD, ribX and ytcG. The member from Streptomyces coelicolor is found upstream in the operon of the class II oxygen-independent ribonucleotide reductase gene nrdJ and was shown to repress nrdJ expression. Many members of this family are found near genes for riboflavin biosynthesis in Gram-negative bacteria, suggesting a role in that pathway. However, a phylogenetic profiling study associates members of this family with the presence of a palindromic signal with consensus acaCwAtATaTwGtgt, termed the NrdR-box, an upstream element for most operons for ribonucleotide reductase of all three classes in bacterial genomes.
Probab=97.23 E-value=0.00065 Score=65.64 Aligned_cols=72 Identities=17% Similarity=0.218 Sum_probs=54.0
Q ss_pred eEEccCCceeccChhHHHHHHHHHHhcCCCCCCCHH---HHHHHHHhhcCC----CCCHHHHHHHHHHHHHhhccCCCCh
Q 003575 2 YVIKRDGRKEPVRFDKITARLKKLSYGLSKEHCDPV---LVAQKVCAGVYK----GVTTTQLDELAAETAAAMTVNHPDY 74 (810)
Q Consensus 2 ~v~krdG~~e~~~~~ki~~~i~~~~~~l~~~~v~~~---~i~~~~~~~~~~----~itt~ei~~~~~~~a~~~~~~~p~y 74 (810)
.|+|+||+.|+||.+||..-|.+||+.=+ |+.+ .++..+...|.+ .|++.+|=+++.+....+ ++=.|
T Consensus 50 ~ViKkdG~re~Fdr~Kl~~gl~~Ac~KRp---Vs~e~ie~~v~~Ie~~l~~~~~~EI~S~~IGe~Vm~~L~~l--D~VAY 124 (147)
T TIGR00244 50 TVIKQDGVREPFNREKLLRGMVRACEKRP---VSFDDLEHAINHIEAQLRAQGEREVPSELIGQMVMQYLKKL--DEVAY 124 (147)
T ss_pred EEEcCCCCCCCCCHHHHHHHHHHHhcCCC---CCHHHHHHHHHHHHHHHHHcCCCcccHHHHHHHHHHHHhhc--Ccchh
Confidence 59999999999999999999999999855 5543 455566666643 589999999988776544 33355
Q ss_pred HHHH
Q 003575 75 ALLA 78 (810)
Q Consensus 75 ~~lA 78 (810)
-..|
T Consensus 125 VRFA 128 (147)
T TIGR00244 125 IRFA 128 (147)
T ss_pred hhhh
Confidence 4444
No 47
>COG1327 Predicted transcriptional regulator, consists of a Zn-ribbon and ATP-cone domains [Transcription]
Probab=96.74 E-value=0.0033 Score=60.76 Aligned_cols=72 Identities=21% Similarity=0.324 Sum_probs=53.9
Q ss_pred eEEccCCceeccChhHHHHHHHHHHhcCCCCCCCHH---HHHHHHHhhcCC----CCCHHHHHHHHHHHHHhhccCCCCh
Q 003575 2 YVIKRDGRKEPVRFDKITARLKKLSYGLSKEHCDPV---LVAQKVCAGVYK----GVTTTQLDELAAETAAAMTVNHPDY 74 (810)
Q Consensus 2 ~v~krdG~~e~~~~~ki~~~i~~~~~~l~~~~v~~~---~i~~~~~~~~~~----~itt~ei~~~~~~~a~~~~~~~p~y 74 (810)
.|||+||+.||||.+||..-+..||+.=+ |+.. .++..+..+|.. .|++.+|=+++.+....+ ++=.|
T Consensus 50 ~VvKkdg~Re~F~r~Kl~~gl~~A~~KRp---Vs~e~ie~~v~~ie~~Lr~~g~~EV~S~~IG~~VM~~Lk~l--D~VAY 124 (156)
T COG1327 50 IVVKKDGRREPFDREKLRRGLIRACEKRP---VSSEQIEEAVSHIERQLRSSGEREVPSKEIGELVMEELKKL--DEVAY 124 (156)
T ss_pred eEECcCCCcCCCCHHHHHHHHHHHHhcCC---CCHHHHHHHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHhc--chhhh
Confidence 48999999999999999999999999865 5654 455556666643 589999999888877555 33344
Q ss_pred HHHH
Q 003575 75 ALLA 78 (810)
Q Consensus 75 ~~lA 78 (810)
-..|
T Consensus 125 vRFA 128 (156)
T COG1327 125 VRFA 128 (156)
T ss_pred hhhh
Confidence 4443
No 48
>PRK08579 anaerobic ribonucleoside triphosphate reductase; Provisional
Probab=96.39 E-value=0.15 Score=61.15 Aligned_cols=203 Identities=16% Similarity=0.139 Sum_probs=115.0
Q ss_pred eeeeccccCchhhhhccCCccccccccccccCCCCCccCCHHHHHHHHHHHHHHHH---H----HHhc--CCCChHHHHH
Q 003575 442 AVCNLASIALPRYVREKGVPVQSNVSKLVGSRDSKNRLFDFERLAEVTKIITENLN---K----IIDV--NHYPIETTRR 512 (810)
Q Consensus 442 ~~CNL~SInL~~~v~~~~~~~~~~~~~~~g~~~~~~~~fD~~~l~~~v~~avr~LD---~----vId~--~~~p~~~~~~ 512 (810)
+.+.-.+|||++.--.. .++...| |+.|.+.+.++.+.|. . .++. ..||.-...-
T Consensus 334 GnigVVTINLPRIa~~a---------------~gd~~~F-~~~Ld~~lela~~~L~~kr~~~~~~~~~~~~l~P~~~~~l 397 (625)
T PRK08579 334 GSVNVTTVNLPRIALEA---------------RGDDDKF-WELYEERLELVRITLDWFRERYVKLLKTYPEMYSMIKEYL 397 (625)
T ss_pred CceeeEeccHHHHHHHh---------------CCCHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHhhchhhhHHHHHhc
Confidence 34445589999986421 0111112 5667777777766665 2 3333 4566522111
Q ss_pred Hhh-ccCCceeecchHHHHHHH-cCCC--------CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCCCCCCcccc
Q 003575 513 SNL-RHRPIGIGIQGLADTFIL-LGLP--------FESPEAQQLNKDIFETIYYHALKASAELAVKDGPYETYFGSPMSK 582 (810)
Q Consensus 513 ~~~-~~R~iGlGv~Glad~L~~-~gi~--------y~S~ea~~l~~~i~e~i~~~a~~aS~eLAke~G~~~~f~~S~~~~ 582 (810)
... ++.-.-||+.||++++.. .|.. -++++|.+++.+|.++|+..+.+.+ +|.|--=+.+.+|.
T Consensus 398 ~~~~~~~~~tIG~iGl~E~~~~~~G~~~~~~~~~~~~~~~~~~~~~~il~~mr~~~~~~~----~etg~~~nle~TPA-- 471 (625)
T PRK08579 398 EEFPSSHFNTIGIIGLPEAAAIYLGEPKLWTEGSRRDWLEAAELMKKMVEFAVEKAREWM----KETGTPWNVEEVPG-- 471 (625)
T ss_pred hhhhhCCEEEEEeehHHHHHHHHcCCCcccccCChhhhHHHHHHHHHHHHHHHHHHHHHH----HHHCCceEEEEccc--
Confidence 111 233479999999999865 6743 3567899999999999998766544 44453111222221
Q ss_pred CccccccccCCCCCcccHHHHHHHHHhcCccccceeccCCCcchhhhcCCCc-cccccccceeeEEcccCceEEeCHHHH
Q 003575 583 GILQVDMWNITPSDRWDWSSLREMISKNGVRNSLLVAPMPTASTSQILGNNE-CFEPYTSNIYTRRVLSGEFIVVNKHLL 661 (810)
Q Consensus 583 G~l~~d~~~~~~~~~~dW~~Lr~~i~~~G~RNs~l~AiaPT~stS~i~g~s~-gieP~~s~~y~r~~~~g~~~~vn~~l~ 661 (810)
...--.-.|.+-+++|.- +. .++ +--|++.|.|. .
T Consensus 472 -------------Es~~~Rfak~D~~~fg~i--------~~--------~~~~~~~~yYTNS~~-p-------------- 507 (625)
T PRK08579 472 -------------ESAAAKLAIKDLKLFPEL--------RE--------YLSDPENPIYSTSIA-P-------------- 507 (625)
T ss_pred -------------chHHHHHHHHHHHHcCCC--------cc--------cccCCCCCceeCcee-e--------------
Confidence 100111223344556621 10 110 00133332221 0
Q ss_pred HHHHHcCCChHHHHHHHHhcCCccccccCCchHHHhhccccccCChHHHHHHHHHhCcccccccceeEeeCC-CChHHHH
Q 003575 662 KDLTELGLWSHALKTKIIYENGSVSKISEIPEELKAIYKTVWEIKQKTLVDMAADRGCYIDQSQSLNIHMEQ-PDHGKLT 740 (810)
Q Consensus 662 ~~l~~~g~~~~~~~~~i~~~~Gsv~~~~~lp~~~k~~y~tA~ei~~~~~i~~~a~~Q~~vDqs~S~nl~~~~-~~~~~l~ 740 (810)
-..++++-+-|+..+..|++..-+--.-+++.+ ++.+.+.
T Consensus 508 ---------------------------------------v~~~i~~~eki~~e~~~~~~~~GG~i~hi~l~E~pn~~al~ 548 (625)
T PRK08579 508 ---------------------------------------YYGPLELWDRIEIEEKVQQEFTGGVMMHIFLGEEPDPEALA 548 (625)
T ss_pred ---------------------------------------CCCCCCHHHHHHhhccccccccCceEEEEEeCCCCCHHHHH
Confidence 013366677788999999999988888888875 6677888
Q ss_pred HHHHHHHHc
Q 003575 741 SLHFYAWSK 749 (810)
Q Consensus 741 ~~~~~Awk~ 749 (810)
++..++.+.
T Consensus 549 ~lv~~~~~~ 557 (625)
T PRK08579 549 KLTKRIMNT 557 (625)
T ss_pred HHHHHHHhc
Confidence 888888553
No 49
>PRK07207 ribonucleotide-diphosphate reductase subunit alpha; Validated
Probab=95.74 E-value=0.026 Score=70.75 Aligned_cols=64 Identities=14% Similarity=0.180 Sum_probs=46.7
Q ss_pred CeEEccCCceeccChhHHHHHHHHHHhcCCCCC--------CCHHHHHHHHHhhcC------CCCCHHHHHHHHHHHH
Q 003575 1 MYVIKRDGRKEPVRFDKITARLKKLSYGLSKEH--------CDPVLVAQKVCAGVY------KGVTTTQLDELAAETA 64 (810)
Q Consensus 1 ~~v~krdG~~e~~~~~ki~~~i~~~~~~l~~~~--------v~~~~i~~~~~~~~~------~~itt~ei~~~~~~~a 64 (810)
|.||||||++++||.+||..+|++|....+... -....++.+|...+. +.++.+|||+++.++.
T Consensus 34 ~~VIKRDG~~v~Fd~~KI~~AI~KA~~av~~~~~~~~~~~~~~~~~l~~~V~~~l~~~~~~~~~vsVEeIQD~VE~~L 111 (965)
T PRK07207 34 YKVIRRNGSVVPFEPSKIAVAMTKAFLAVEGGQAAASARVRETVEQLTEQVVRALVRRRPSGGTFHIEDIQDQVELAL 111 (965)
T ss_pred eEEEecCCccCCCCHHHHHHHHHHHHHhhccccccccchhhHHHHHHHHHHHHHHHHhccCCCCCCHHHHHHHHHHHH
Confidence 689999999999999999999999876542110 112345555555443 2699999999887766
No 50
>TIGR02827 RNR_anaer_Bdell anaerobic ribonucleoside-triphosphate reductase. Members of this family belong to the class III anaerobic ribonucleoside-triphosphate reductases (RNR). These glycine-radical-containing enzymes are oxygen-sensitive and operate under anaerobic conditions. The genes for this family are pair with genes for an acitivating protein that creates a glycine radical. Members of this family, though related, fall outside the scope of TIGR02487, a functionally equivalent protein set; no genome has members in both familes. Identification as RNR is supported by gene pairing with the activating protein, lack of other anaerobic RNR, and presence of an upstream regulatory element strongly conserved upstream of most RNR operons.
Probab=95.25 E-value=0.26 Score=58.67 Aligned_cols=108 Identities=20% Similarity=0.280 Sum_probs=78.3
Q ss_pred CCceeeeccccCchhhhhccCCccccccccccccCCCCCccCCHHHHHHHHHHHH----HHHHHHHhcCCCChHHHHHHh
Q 003575 439 EETAVCNLASIALPRYVREKGVPVQSNVSKLVGSRDSKNRLFDFERLAEVTKIIT----ENLNKIIDVNHYPIETTRRSN 514 (810)
Q Consensus 439 ~e~~~CNL~SInL~~~v~~~~~~~~~~~~~~~g~~~~~~~~fD~~~l~~~v~~av----r~LD~vId~~~~p~~~~~~~~ 514 (810)
.-+++++-.+|||++..-.. =|++++-++++.+. ..|...++.+.||+-......
T Consensus 319 ~~tGSigVVTINLPRia~~a---------------------~~L~~~l~la~~~L~~kr~~l~~~~~~g~~P~~~~~~~~ 377 (586)
T TIGR02827 319 VATGSINVITINMNRLVQDS---------------------RDLAHEVEKIHKYQVAYRELMKEYLAAGLLPLYDAGFIT 377 (586)
T ss_pred CcccccceEEecHHHHHHHh---------------------CCHHHHHHHHHHHHHHHHHHHHHHhhccCcHHHHhhhcc
Confidence 34678888899999986431 13454444444322 256667777889986654444
Q ss_pred hccCCceeecchHHHHHHHcCCC-CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCC
Q 003575 515 LRHRPIGIGIQGLADTFILLGLP-FESPEAQQLNKDIFETIYYHALKASAELAVKDGP 571 (810)
Q Consensus 515 ~~~R~iGlGv~Glad~L~~~gi~-y~S~ea~~l~~~i~e~i~~~a~~aS~eLAke~G~ 571 (810)
.+..-.-||+.||++++..+|.. -+|++|.+|+.+|.++|+..+.+.+ +|.|-
T Consensus 378 ~~~~f~TIGiiGl~Ea~~~~G~~~~~~~e~~~fa~~vl~~mr~~~~~~~----~etG~ 431 (586)
T TIGR02827 378 LDKQFLTIGINGMVEAAEFMGLTVGYNEEYKDFVQNVLKVIYEANQKAY----HEYGF 431 (586)
T ss_pred cccceEeeeHhhHHHHHHHhCCCCCCCHHHHHHHHHHHHHHHHHHHHHH----HHHCC
Confidence 44556889999999999888987 4799999999999999998877665 55563
No 51
>PRK12365 ribonucleotide-diphosphate reductase subunit alpha; Provisional
Probab=94.46 E-value=0.11 Score=65.89 Aligned_cols=64 Identities=16% Similarity=0.168 Sum_probs=45.5
Q ss_pred CeEEccCCceeccChhHHHHHHHHHHhcCCCCC----C---C---H----HHHHHHHHhhcCC--CCCHHHHHHHHHHHH
Q 003575 1 MYVIKRDGRKEPVRFDKITARLKKLSYGLSKEH----C---D---P----VLVAQKVCAGVYK--GVTTTQLDELAAETA 64 (810)
Q Consensus 1 ~~v~krdG~~e~~~~~ki~~~i~~~~~~l~~~~----v---~---~----~~i~~~~~~~~~~--~itt~ei~~~~~~~a 64 (810)
|+|+||||+.++||.+||..+|++|........ . + . ..++.++...+.+ .+++++||+++..+.
T Consensus 9 ~~ViKRDG~~v~Fd~~KI~~AI~kA~~a~~~~~~~~~~~~~~~~~~~~~~~~v~~~i~~~i~~~~~vsVEeIQDmVE~~L 88 (1046)
T PRK12365 9 YTIVKRNGMFVPFNQNRIFQALEAAFRDTRSLEDHSPLPEDLESSIRSITHQVVKEVVQKITEGQVVTVERIQDMVESQL 88 (1046)
T ss_pred eEEEecCCccCCCCHHHHHHHHHHHHHhhccccccccccchhHHHHHHHHHHHHHHHHHHhccCCCCCHHHHHHHHHHHH
Confidence 479999999999999999999999876543100 0 0 1 2344445554432 599999999887665
No 52
>PF11230 DUF3029: Protein of unknown function (DUF3029); InterPro: IPR016905 Members of this family are homologs to enzymes known to undergo activation by a radical SAM protein to create an active site glycyl radical. This family appears to be activated by the YjjW radical SAM protein, usually encoded by an adjacent gene.
Probab=89.83 E-value=11 Score=43.15 Aligned_cols=264 Identities=17% Similarity=0.162 Sum_probs=168.1
Q ss_pred EEEeHHHHHHHHHHHHHhhCCceeEechhhhhhC-CCCCCCeEEeecCCccccccCCCCCceeeeccccCchhhhhccCC
Q 003575 382 MVISARKLWFEILNSQIETGTPYMLFKDSCNRKS-NQQNLGTIKSSNLCTEIVEFSSPEETAVCNLASIALPRYVREKGV 460 (810)
Q Consensus 382 ~~v~Ar~l~~~I~~~~~etG~P~i~f~D~~Nr~~-~~~~~g~I~~sNlC~EI~~~~~~~e~~~CNL~SInL~~~v~~~~~ 460 (810)
..+...++....++++.+++.|-+.+- .+.+.. .....|.+.|=| .+ + --.+...|.-+||.......
T Consensus 173 ~~~Tpdd~~~~A~~~~l~csKP~faN~-~~~~~~~~~~~ygIvSCYN----~L-p---~~GGa~TLvRlnL~~vA~~a-- 241 (487)
T PF11230_consen 173 PEITPDDFAEQAIENILECSKPHFANH-PMHRKDFGEGDYGIVSCYN----SL-P---LGGGAYTLVRLNLKEVAKRA-- 241 (487)
T ss_pred CCCCcHHHHHHHHHHHHhcCCchhcCC-HhHHHhcCCCCeeEEEecc----cc-c---cCCcchhhhhhhHHHHHHHc--
Confidence 456788999999999999999999753 233332 213345555444 22 1 12356789999998876531
Q ss_pred ccccccccccccCCCCCccCCHHHHHHHHHHHHHHHHHHHhc-----CCCC----hHHHHHHhhccCCce-eecchHHHH
Q 003575 461 PVQSNVSKLVGSRDSKNRLFDFERLAEVTKIITENLNKIIDV-----NHYP----IETTRRSNLRHRPIG-IGIQGLADT 530 (810)
Q Consensus 461 ~~~~~~~~~~g~~~~~~~~fD~~~l~~~v~~avr~LD~vId~-----~~~p----~~~~~~~~~~~R~iG-lGv~Glad~ 530 (810)
.+...|=-+.|-+.+.++.+++|.=|.. ++|. +.|- -.++.|=.| -|+.|||+.
T Consensus 242 --------------~~~~dF~~~~LP~~~~~~~~~md~R~~flvEeS~FFessFLvkEG--lI~~~rF~~MFGi~GlAEa 305 (487)
T PF11230_consen 242 --------------KDIEDFLNNVLPYYCDLMLEYMDARIRFLVEESNFFESSFLVKEG--LIERDRFTPMFGIVGLAEA 305 (487)
T ss_pred --------------CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccccccchhhhcc--ccchhhcchHhHHHHHHHH
Confidence 1111232356778888888888876542 3332 2221 123445455 499999986
Q ss_pred H----HHcCC--CCC-CHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCCCCCCccccCccccccccCCCCCcccHHHH
Q 003575 531 F----ILLGL--PFE-SPEAQQLNKDIFETIYYHALKASAELAVKDGPYETYFGSPMSKGILQVDMWNITPSDRWDWSSL 603 (810)
Q Consensus 531 L----~~~gi--~y~-S~ea~~l~~~i~e~i~~~a~~aS~eLAke~G~~~~f~~S~~~~G~l~~d~~~~~~~~~~dW~~L 603 (810)
- .+.|. .|+ |++|-+|..+|++.|... .+.. | .+|..|+
T Consensus 306 VN~Ll~~eg~~~~yG~~~~An~Lg~~I~~~l~~~--------V~~~---~----~~y~~~~------------------- 351 (487)
T PF11230_consen 306 VNILLEKEGKEERYGHDEEANELGVRIMEKLAEI--------VKSH---P----VKYCEGT------------------- 351 (487)
T ss_pred HHHHHhccCCccccCCChHHHHHHHHHHHHHHHH--------HhcC---C----Ccccccc-------------------
Confidence 3 33344 786 789999999999887642 2211 1 1222221
Q ss_pred HHHHHhcCccccceeccCCCcchhhhcCCCccccccccceeeEEcccCceEEeCHHHHHHHHHcCCChHHHHHHHHhcCC
Q 003575 604 REMISKNGVRNSLLVAPMPTASTSQILGNNECFEPYTSNIYTRRVLSGEFIVVNKHLLKDLTELGLWSHALKTKIIYENG 683 (810)
Q Consensus 604 r~~i~~~G~RNs~l~AiaPT~stS~i~g~s~gieP~~s~~y~r~~~~g~~~~vn~~l~~~l~~~g~~~~~~~~~i~~~~G 683 (810)
.| ...|-|+ .| +|.=.|+|+|+.=++ |
T Consensus 352 ------~g--r~lLHAQ--vG-i~~D~~~TPG~RIp~----------G-------------------------------- 378 (487)
T PF11230_consen 352 ------GG--RFLLHAQ--VG-ISSDKGVTPGVRIPY----------G-------------------------------- 378 (487)
T ss_pred ------CC--EEEEEec--cC-ccccCCCCCCCcCcC----------C--------------------------------
Confidence 01 1122332 22 344467777743111 1
Q ss_pred ccccccCCchHHHhhccccccCChHHHHHHHHHhCcccccccceeEeeCC---CChHHHHHHHHHHHHcCCceEEEEecC
Q 003575 684 SVSKISEIPEELKAIYKTVWEIKQKTLVDMAADRGCYIDQSQSLNIHMEQ---PDHGKLTSLHFYAWSKGMKTGMYYLRT 760 (810)
Q Consensus 684 sv~~~~~lp~~~k~~y~tA~ei~~~~~i~~~a~~Q~~vDqs~S~nl~~~~---~~~~~l~~~~~~Awk~GlKt~~yY~r~ 760 (810)
-|-++-+||+..|...+|-..++|=-+-+++ .+++.+.++..=|++.|.+=.+.|.-.
T Consensus 379 -------------------~EP~~~~hl~~~A~~H~yfpsGi~DIf~~d~T~k~NP~A~ldi~kGAf~~G~Ryfs~y~~~ 439 (487)
T PF11230_consen 379 -------------------EEPDLVDHLQASAPFHKYFPSGIGDIFTFDETVKNNPEALLDICKGAFSLGMRYFSAYVSD 439 (487)
T ss_pred -------------------CCCCHHHHHHHhcccccCCCCCcccccccchhhHhCHHHHHHHHHHHHhcCCeEEEEecCC
Confidence 1123466889999999999999996666664 466789999999999999999999998
Q ss_pred cccccccccccccccccc
Q 003575 761 RAAADAIKFTVDTSVLNN 778 (810)
Q Consensus 761 ~~~~~~~~~~~~~~~~~~ 778 (810)
..--+...+.|.++.+..
T Consensus 440 sDlVRVTGYlVK~SdieK 457 (487)
T PF11230_consen 440 SDLVRVTGYLVKRSDIEK 457 (487)
T ss_pred CceEEEeeeeehhhhHHH
Confidence 888888888888876554
No 53
>COG1328 NrdD Oxygen-sensitive ribonucleoside-triphosphate reductase [Nucleotide transport and metabolism]
Probab=75.61 E-value=9.2 Score=46.64 Aligned_cols=61 Identities=25% Similarity=0.299 Sum_probs=44.1
Q ss_pred eEEccCCceeccChhHHHHHHHHHHhcCCCCCCCH---H----HHHHHHHhhcCCCCCHHHHHHHHHHHHH
Q 003575 2 YVIKRDGRKEPVRFDKITARLKKLSYGLSKEHCDP---V----LVAQKVCAGVYKGVTTTQLDELAAETAA 65 (810)
Q Consensus 2 ~v~krdG~~e~~~~~ki~~~i~~~~~~l~~~~v~~---~----~i~~~~~~~~~~~itt~ei~~~~~~~a~ 65 (810)
.|+||||+..+||+.||..+|.++.+-.+. .|+ . .|.+++.. +...+..+++|..+.....
T Consensus 4 ~vikrDg~~~~fd~~~i~~ai~~a~~~~~~--~d~~~~~~~~~~i~~~i~~-~~~~~~i~~iq~~ve~~l~ 71 (700)
T COG1328 4 VVIKRDGRVAEFDRNKIINAVRKAAKEIES--FDIAKALIRATGVDEEVAR-IAREVEIEEIQLLVEYLLM 71 (700)
T ss_pred eeEeeccccccchHHHHHHHHHHHHHhhcc--ccHHHHHHHHHHHHHHHhh-HhhhhhHHHHHHHHHHHHH
Confidence 599999999999999999999999876542 332 1 23444444 4556777888887766553
No 54
>PF04282 DUF438: Family of unknown function (DUF438); InterPro: IPR007380 This is a a group of uncharacterised proteins.
Probab=52.88 E-value=31 Score=29.83 Aligned_cols=43 Identities=12% Similarity=0.193 Sum_probs=30.3
Q ss_pred ChhHHHHHHHHHHhcCCCCCCCHHHHHHHHHhhcCCCCCHHHHHHHHH
Q 003575 14 RFDKITARLKKLSYGLSKEHCDPVLVAQKVCAGVYKGVTTTQLDELAA 61 (810)
Q Consensus 14 ~~~ki~~~i~~~~~~l~~~~v~~~~i~~~~~~~~~~~itt~ei~~~~~ 61 (810)
|++.+++...+.-.+ |++.+|..-=..=+.+||+.+||+.++=
T Consensus 14 ~~e~vk~~F~~~~~~-----Vs~~EI~~~Eq~Li~eG~~~eeiq~LCd 56 (71)
T PF04282_consen 14 DPEEVKEEFKKLFSD-----VSASEISAAEQELIQEGMPVEEIQKLCD 56 (71)
T ss_pred CHHHHHHHHHHHHCC-----CCHHHHHHHHHHHHHcCCCHHHHHHHhH
Confidence 668888887776655 6776665444444458999999998753
No 55
>PF03847 TFIID_20kDa: Transcription initiation factor TFIID subunit A; InterPro: IPR003228 Human transcription initiation factor TFIID is composed of the TATA-binding polypeptide (TBP) and at least 13 TBP-associated factors (TAFs) that collectively or individually are involved in activator-dependent transcription [].; GO: 0006352 transcription initiation, DNA-dependent, 0005669 transcription factor TFIID complex; PDB: 1H3O_B.
Probab=38.78 E-value=67 Score=27.47 Aligned_cols=32 Identities=13% Similarity=0.237 Sum_probs=28.2
Q ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCC
Q 003575 540 SPEAQQLNKDIFETIYYHALKASAELAVKDGP 571 (810)
Q Consensus 540 S~ea~~l~~~i~e~i~~~a~~aS~eLAke~G~ 571 (810)
++++.++.-++++..-...+..|+.|||.||.
T Consensus 19 d~~vee~Ll~laddFv~~v~~~ac~lAKhR~s 50 (68)
T PF03847_consen 19 DPDVEELLLELADDFVDDVVSFACRLAKHRKS 50 (68)
T ss_dssp -HHHHHHHHHHHHHHHHHHHHHHHHHHHHTT-
T ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHHHhccCC
Confidence 47788999999999999999999999999985
No 56
>COG1328 NrdD Oxygen-sensitive ribonucleoside-triphosphate reductase [Nucleotide transport and metabolism]
Probab=35.53 E-value=1.2e+02 Score=37.29 Aligned_cols=45 Identities=31% Similarity=0.299 Sum_probs=36.3
Q ss_pred ccCCceeecchHHHHHHHcCC--CCCCHHHHHHHHHHHHHHHHHHHH
Q 003575 516 RHRPIGIGIQGLADTFILLGL--PFESPEAQQLNKDIFETIYYHALK 560 (810)
Q Consensus 516 ~~R~iGlGv~Glad~L~~~gi--~y~S~ea~~l~~~i~e~i~~~a~~ 560 (810)
..-.+.+|..|+++++..+.= -++|+||..+..++.+.|+.++.+
T Consensus 480 ~~~t~s~g~igl~E~l~~~~g~~~~~~~ea~~~~~~iv~~~~~~~~~ 526 (700)
T COG1328 480 GRATISLGFIGLNEMLKYLTGEHLHESEEAKKFGIKIVEYIREYADK 526 (700)
T ss_pred ccceEEEeecchHHHHHHhcCCCcccCHHHHHHHHHHHHHHHHHHHH
Confidence 345689999999999986433 236999999999999999987664
No 57
>PRK15329 chaperone protein SicP; Provisional
Probab=34.61 E-value=45 Score=32.42 Aligned_cols=29 Identities=21% Similarity=0.449 Sum_probs=26.3
Q ss_pred EEeHHHHHHHHH---HHHHhhCCceeEechhh
Q 003575 383 VISARKLWFEIL---NSQIETGTPYMLFKDSC 411 (810)
Q Consensus 383 ~v~Ar~l~~~I~---~~~~etG~P~i~f~D~~ 411 (810)
.+.+.++|++++ ....+.|.|.+.|.|+.
T Consensus 57 ~~~~~~i~~~~l~~N~~l~e~g~g~l~y~e~~ 88 (138)
T PRK15329 57 PVAGDSIWRQILVINLELAENGEGTLAYIDAA 88 (138)
T ss_pred cchHHHHHHHHHHHHHHHHhCCCceEEEcccC
Confidence 556899999999 99999999999999886
No 58
>cd07981 TAF12 TATA Binding Protein (TBP) Associated Factor 12 (TAF12) is one of several TAFs that bind TBP and is involved in forming Transcription Factor IID (TFIID) complex. The TATA Binding Protein (TBP) Associated Factor 12 (TAF12) is one of several TAFs that bind TBP and are involved in forming the TFIID complex. TFIID is one of the seven General Transcription Factors (GTFs) (TFIIA, TFIIB, TFIID, TFIIE, TFIIF, and TFIID) that are involved in accurate initiation of transcription by RNA polymerase II in eukaryotes. TFIID plays an important role in the recognition of promoter DNA and assembly of the pre-initiation complex. TFIID complex is composed of the TBP and at least 13 TAFs. TAFs are named after their electrophoretic mobility in polyacrylamide gels in different species. A new, unified nomenclature has been suggested for the pol II TAFs to show the relationship between TAF orthologs and paralogs. Several hypotheses are proposed for TAFs function such as serving as activator-bind
Probab=32.46 E-value=96 Score=26.62 Aligned_cols=33 Identities=15% Similarity=0.245 Sum_probs=30.4
Q ss_pred CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCC
Q 003575 539 ESPEAQQLNKDIFETIYYHALKASAELAVKDGP 571 (810)
Q Consensus 539 ~S~ea~~l~~~i~e~i~~~a~~aS~eLAke~G~ 571 (810)
-+++|.++..++.|..-....+.|++||+.+|.
T Consensus 20 ~~~da~~~l~~~~e~fv~~v~~~a~~lAkHr~~ 52 (72)
T cd07981 20 LDPDVEELLLEIADDFVDDVVEDACRLAKHRKS 52 (72)
T ss_pred cCHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCC
Confidence 468899999999999999999999999999985
No 59
>COG2099 CobK Precorrin-6x reductase [Coenzyme metabolism]
Probab=27.27 E-value=64 Score=34.64 Aligned_cols=81 Identities=23% Similarity=0.290 Sum_probs=54.1
Q ss_pred eecchHHHHHHHcCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHcC-CCCCCCCCccccCccccccccCCCCCcccH
Q 003575 522 IGIQGLADTFILLGLPFESPEAQQLNKDIFETIYYHALKASAELAVKDG-PYETYFGSPMSKGILQVDMWNITPSDRWDW 600 (810)
Q Consensus 522 lGv~Glad~L~~~gi~y~S~ea~~l~~~i~e~i~~~a~~aS~eLAke~G-~~~~f~~S~~~~G~l~~d~~~~~~~~~~dW 600 (810)
+|.-||+.+|..+++..==+..-=++.+ |..+ .++.|+|.| ||=.|++-+|... .|.|-. -.+|
T Consensus 53 l~~e~l~~~l~e~~i~llIDATHPyAa~----iS~N----a~~aake~gipy~r~eRP~~~~~---gd~~~~----V~d~ 117 (257)
T COG2099 53 LGAEGLAAFLREEGIDLLIDATHPYAAR----ISQN----AARAAKETGIPYLRLERPPWAPN---GDNWIE----VADI 117 (257)
T ss_pred CCHHHHHHHHHHcCCCEEEECCChHHHH----HHHH----HHHHHHHhCCcEEEEECCccccC---CCceEE----ecCH
Confidence 7889999999999987632222223333 3433 346789999 8889999998763 233332 2378
Q ss_pred HHHHHHHHhcCcccccee
Q 003575 601 SSLREMISKNGVRNSLLV 618 (810)
Q Consensus 601 ~~Lr~~i~~~G~RNs~l~ 618 (810)
+++-+.+++.| |+-.+|
T Consensus 118 ~ea~~~~~~~~-~rVflt 134 (257)
T COG2099 118 EEAAEAAKQLG-RRVFLT 134 (257)
T ss_pred HHHHHHHhccC-CcEEEe
Confidence 99988888887 444444
Done!