Query 003575
Match_columns 810
No_of_seqs 234 out of 1656
Neff 6.8
Searched_HMMs 29240
Date Tue Mar 26 18:08:03 2013
Command hhsearch -i /local_scratch/syshi/lefta3m/003575.a3m -d /local_scratch/syshi/pdb70.hhm -v 0 -o /local_scratch/syshi/H1_1624-1627//hhsearch_pdb/003575hhsearch_pdb
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3hnc_A Ribonucleoside-diphosph 1.0 1 1 1770.5 67.1 791 1-810 1-792 (792)
2 3k8t_A Ribonucleoside-diphosph 1.0 1 1 1747.5 57.6 760 1-775 1-760 (888)
3 2wgh_A Ribonucleoside-diphosph 1.0 1 1 1504.4 57.7 670 75-763 2-671 (676)
4 2xap_A Ribonucleoside-diphosph 1.0 1 1 1498.6 57.2 702 1-768 5-742 (761)
5 1peq_A Ribonucleoside-diphosph 1.0 1 1 1326.8 42.6 634 67-765 9-701 (714)
6 3o0q_A Ribonucleoside-diphosph 1.0 1 1 1284.8 50.1 578 131-767 3-638 (644)
7 1l1l_A Ribonucleoside triphosp 1.0 1 1 919.3 31.6 510 127-764 11-684 (739)
8 1dq3_A Endonuclease; PI-PFUI, 1.0 1 1 70.8 -12.7 68 248-316 1-68 (454)
9 1h7b_A Anaerobic ribonucleotid 1.0 1 1 28.7 16.4 251 387-752 251-532 (605)
10 1h3o_B Transcription initiatio 1.0 1 1 14.4 5.2 32 540-571 25-56 (76)
No 1
>3hnc_A Ribonucleoside-diphosphate reductase large subuni; oxidoreductase, ribonucleotide reductase, allosteric enzyme, binding, DNA replication; HET: TTP; 2.41A {Homo sapiens} PDB: 3hnd_A* 3hne_A* 3hnf_A*
Probab=1.00 E-value=1 Score=1770.46 Aligned_cols=791 Identities=66% Similarity=1.130 Sum_probs=760.6
Q ss_pred CEEECCCCCEECCCHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHCCCCCCHHHHHHH
Q ss_conf 95881499230158568999999988029999879898999998111899998799999999998542079973999999
Q 003575 1 MYVIKRDGRKEPVRFDKITARLKKLSYGLSKEHCDPVLVAQKVCAGVYKGVTTTQLDELAAETAAAMTVNHPDYALLAGR 80 (810)
Q Consensus 1 ~~V~KrdG~~e~~~~~ki~~~i~~a~~~l~~~~v~~~~i~~~~~~~l~d~itt~el~~~li~~a~~~~~~~p~y~~lA~R 80 (810)
|+|+||||+.|||+++||+++|+|+|+||+.+.||+++|+.++..+++|||||+||++++|++|++|+++||||+++|||
T Consensus 1 ~~v~kr~G~~e~~~~~ki~~~i~~~~~gl~~~~v~~~~i~~~~~~~~~~gitt~el~~~~~~~a~~~~~~~pdy~~~AaR 80 (792)
T 3hnc_A 1 MHVIKRDGRQERVMFDKITSRIQKLCYGLNMDFVDPAQITMKVIQGLYSGVTTVELDTLAAETAATLTTKHPDYAILAAR 80 (792)
T ss_dssp -------------CHHHHHHHHHTTCTTSCTTTCCHHHHHHHHHTTCCTTCCHHHHHHHHHHHHHHGGGTCTHHHHHHHH
T ss_pred CEEEECCCCEEECCHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHCCCCHHHHHHH
T ss_conf 94894699454368999999999996467855679999999998534699998999999999999865539878999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHCHHHHHHHHCCCCCCCCCHHHHHHHHHHHCCCCC
Q ss_conf 99998888951202599999999944301764457664799999960999975411235678880449999974136459
Q 003575 81 VAVSNLHKITKNSFSETIKDMYNYYNKRSGKKASLVADDVYEIIMKNAACLDGAIIYDRDFDFDYFGFKTLERSYLLKMD 160 (810)
Q Consensus 81 l~~~~l~k~~~~~~~~~~~~l~~~~~~~~~~~~~l~~~~~~~~~~~~~~~l~~~i~~~rd~~f~y~g~~~l~~~Yllk~~ 160 (810)
|++++|||++.+.|++.+.+++.+++.++|...+++++++++++.+++++|++.|+|+||+.|+|+|+++|+++|++|.+
T Consensus 81 l~~~~l~k~~~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~i~~~rD~~f~y~g~~~L~~rYllk~~ 160 (792)
T 3hnc_A 81 IAVSNLHKETKKVFSDVMEDLYNYINPHNGKHSPMVAKSTLDIVLANKDRLNSAIIYDRDFSYNYFGFKTLERSYLLKIN 160 (792)
T ss_dssp HHHHHHHHTSCSCHHHHHHHHHSCBCTTTCCBCCSSCHHHHHHHHHTHHHHHHHCCGGGGGGSCHHHHHHHHHHTSCEET
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHHHHHCHHHHCCCCHHHHHHHHHCCCCCCC
T ss_conf 99999999998887788999999877751455342376899999999999997758443348986899999961562529
Q ss_pred CCCCCCHHHHHHHHHHHHCCCCHHHHHHHHHHHHCCCEECCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHH
Q ss_conf 93258989999999824216891789999999743822037762024589988876533333457986879999999999
Q 003575 161 SRVVERPQHMLMRVSVGIHKDDTDSALKTYHLMSQHWFTHATPTLFNAGTPQPQLSSCFLLCMKDDSIEGIYDTLKKCAI 240 (810)
Q Consensus 161 g~~~E~pq~~~~rvA~~l~~~~~~~~~~~y~~ls~~~~~~atP~l~naGt~~~~lsSCfl~~~~~Ds~~~I~~~~~~~a~ 240 (810)
|+++|+||++|||||++|+.++++++++||++||+++|+||||||+|+|++++|||||||+++++||++||+++++++++
T Consensus 161 g~~~E~pq~~~~rVA~~l~~~~~~~a~~~y~~ls~~~f~~aTPtl~NaGt~~~qlsSCFl~~v~~Dsl~~I~~~~~~~a~ 240 (792)
T 3hnc_A 161 GKVAERPQHMLMRVSVGIHKEDIDAAIETYNLLSERWFTHASPTLFNAGTNRPQLSSCFLLSMKDDSIEGIYDTLKQCAL 240 (792)
T ss_dssp TEECCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTSEEECHHHHHHTTSSSCCCCCEEEEECCCSSHHHHHHHHHHHHH
T ss_pred CCEEECHHHHHHHHHHHHCCCCHHHHHHHHHHHHCCCCCCCCHHHHCCCCCCCCCCCEECCCCCCCCHHHHHHHHHHHHH
T ss_conf 98615799999999988600269999999999971770469826643899888777434137788669999999999999
Q ss_pred HHHHCCCCCEEEEEECCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHCCCCCCCCEEEEECCCCCCHHHHHHHHHHCCC
Q ss_conf 99753975200002337998335788877784118999999999974089734573288504786668999995230593
Q 003575 241 ISKSAGGIGLSIHNIRASGSYIHGTNGSSNGIVPMLQVFNDTARYVDQGGGKRKGAFAIYLEPWHADIFEFLDLRKNQGK 320 (810)
Q Consensus 241 i~k~ggGiG~~~s~iR~~Gs~I~g~~g~ssG~vpflk~~~~~~~~v~qgG~~Rrga~~~~l~~wH~DI~~Fl~~K~~~g~ 320 (810)
++|+|||||+|||+|||+|++|+|++|+|||||||||+||+++.+|+|||++||||.|+||++|||||++||++|+++|+
T Consensus 241 isk~GGGiG~~~s~iR~~Gs~I~g~~g~ssG~vpfmk~~d~~~~~v~QgG~~R~GA~~vyL~~wHpDI~eFl~~K~~~g~ 320 (792)
T 3hnc_A 241 ISKSAGGIGVAVSCIRATGSYIAGTNGNSNGLVPMLRVYNNTARYVDQGGNKRPGAFAIYLEPWHLDIFEFLDLKKNTGK 320 (792)
T ss_dssp HHHTTCEEEEECTTSCCTTCEETTTTEECCCSHHHHHHHHHHHHHCCCC------CEEEEECTTBTTHHHHTTSCC----
T ss_pred HHHHCCCCEEEEECCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHCCCCCCCCEEEEECCCCCCHHHHHHHHHCCCC
T ss_conf 98717975674101377788366889888985219998889999998089854663478955888349999997420570
Q ss_pred CCCCCCCCCEECCCCHHHHHHHHCCCCEEEECCCCCCCCHHHHHHHHHHHHHHHHHCCCEEEEEEHHHHHHHHHHHHHHH
Q ss_conf 10000135300224988899986599658766798897211120269999999988094038972999999999987741
Q 003575 321 EECRARDLFYALWVPDLFMERVRDDGKWSLFCPSDASGLADSWGIEFEHLYSQYEEEGRAKMVISARKLWFEILNSQIET 400 (810)
Q Consensus 321 ~~~r~~~~~~sv~i~D~Fm~~v~~~~~w~Lf~P~~~~~L~~~~g~eF~~~Y~~~e~~~~~~~~i~Ar~l~~~I~~~~~et 400 (810)
+++|++++|+||||||+|||||++|++|+||+|+++|+|.++||++|+++|++||++|..+++|+||+||++|++++|+|
T Consensus 321 e~~r~~~l~~sv~ipD~Fm~~v~~d~~w~Lf~P~~~p~L~~~yg~ef~~~Y~~~e~~g~~~k~v~AreLw~~I~~~~~et 400 (792)
T 3hnc_A 321 EEQRARDLFFALWIPDLFMKRVETNQDWSLMCPNECPGLDEVWGEEFEKLYASYEKQGRVRKVVKAQQLWYAIIESQTET 400 (792)
T ss_dssp -----CCEEEEEEECHHHHHHHHTTCEEEEBCTTTSTTGGGCCHHHHHHHHHHHHHTTCCSEEEEHHHHHHHHHHHHHHH
T ss_pred HHHHHHHCCHHHEECHHHHHHHHCCCCEEEECCCCCCCHHHHHHHHHHHHHHHHHHCCCCEEEEEHHHHHHHHHHHHHHH
T ss_conf 76767647000022999999998599778767544762887752688999999986797306866999999999999996
Q ss_pred CCCEEEECHHHHHHCCCCCCCEEEEECCCCCCCCCCCCCCCEEEECCCCCCHHHHHCCCCCCCCCCCCCCCCCCCCCCCC
Q ss_conf 77305720136641898998807753389643446899972010115457012220059764455422125678888667
Q 003575 401 GTPYMLFKDSCNRKSNQQNLGTIKSSNLCTEIVEFSSPEETAVCNLASIALPRYVREKGVPVQSNVSKLVGSRDSKNRLF 480 (810)
Q Consensus 401 G~P~i~f~D~~Nr~~~~~~~g~I~~sNlC~EI~~~~~~~e~~~CNL~sinL~~~v~~~~~~~~~~~~~~~~~~~~~~~~f 480 (810)
|+|||+|+|++|++||+++.|+|++||||+||+||++++++++|||+||||++|+.+ .+.|
T Consensus 401 G~P~i~f~D~~N~~~~~~~~G~I~~SNlC~EI~~~~~~~e~~vCNLgSiNL~~~v~~-------------------~~~f 461 (792)
T 3hnc_A 401 GTPYMLYKDSCNRKSNQQNLGTIKCSNLCTEIVEYTSKDEVAVCNLASLALNMYVTS-------------------EHTY 461 (792)
T ss_dssp SCSEEEEHHHHHHTCTTGGGCCCCCCCSSSCCCCCCBTTBCEEECEEEEEGGGGBCT-------------------TSCB
T ss_pred CCCEEEEHHHHHHCCCCCCCCEEEEECCCCCCCCCCCCCCCCEEECHHCCHHHHHCC-------------------CCCC
T ss_conf 898143455687468887678389863714536789998642463212019988366-------------------6786
Q ss_pred CHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHCCCCCEEECCHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHHH
Q ss_conf 98899999999999999887418998488999851159702115049999998299999998899999999999999999
Q 003575 481 DFERLAEVTKIITENLNKIIDVNHYPIETTRRSNLRHRPIGIGIQGLADTFILLGLPFESPEAQQLNKDIFETIYYHALK 560 (810)
Q Consensus 481 d~~~l~~~v~~avr~LD~vId~~~~p~~~~~~~~~~~R~IGiGv~Glad~L~~~gi~y~S~ea~~l~~~i~e~i~~~a~~ 560 (810)
||+.|+++|+++||+||+|||.+.||+|+++++++++|+||||+|||||+|+++|++|+|+||++|+++|||.|+|+|++
T Consensus 462 D~~~l~~~v~~avr~Ld~vID~~~yP~~~~~~~~~~~R~IGLGvmGlad~L~~~gi~Y~S~ea~~~~~~i~e~i~~~A~~ 541 (792)
T 3hnc_A 462 DFKKLAEVTKVVVRNLNKIIDINYYPVPEACLSNKRHRPIGIGVQGLADAFILMRYPFESAEAQLLNKQIFETIYYGALE 541 (792)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHCCCSSHHHHHHHHHHCCCEEEEECHHHHHHHTTCCTTSHHHHHHHHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHCHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHHH
T ss_conf 99999999999999999999727883499999988706120068789999997699879999999999999999999999
Q ss_pred HHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHCCCCCCCEECCCCCCCHHHHCCCCCCCCCCC
Q ss_conf 99999997099999979966667643201247999801389999999842865543001499953110048975222355
Q 003575 561 ASAELAVKDGPYETYFGSPMSKGILQVDMWNITPSDRWDWSSLREMISKNGVRNSLLVAPMPTASTSQILGNNECFEPYT 640 (810)
Q Consensus 561 aS~eLAkE~G~~~~f~~S~~~~G~l~~d~~~~~~~~~~~W~~Lr~~i~~~G~RNs~l~AiaPT~s~S~i~g~t~gieP~~ 640 (810)
||++||+|+|+||.|++|+|++|++|||.|+..|+..+||++||++|++||+|||+++|||||||||+|+|+|+||||+|
T Consensus 542 aS~eLAkE~G~f~~f~~S~~~~G~~~~d~~~~~~~~~~dW~~Lr~~i~~~GlRNs~l~AiAPTgS~S~i~g~t~gIEP~~ 621 (792)
T 3hnc_A 542 ASCDLAKEQGPYETYEGSPVSKGILQYDMWNVTPTDLWDWKVLKEKIAKYGIRNSLLIAPMPTASTAQILGNNESIEPYT 621 (792)
T ss_dssp HHHHHHHHHCCCTTCTTSGGGGTCCHHHHTTCCCCTTSCHHHHHHHHHHHCCSCSCCBCCCCCHHHHHHHTCCCTTCCCS
T ss_pred HHHHHHHHHCCCCCCCCCCCCCCCCCHHHCCCCCHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCHHHHHCCCCCCCCCCH
T ss_conf 99999998598988777822135542333047845665499999999873665301205577504788708987528352
Q ss_pred CCEEEEECCCCCEEEECHHHHHHHHHCCCCHHHHHHHHHHCCCCCCCCCCCCHHHHHHCCCCCCCCHHHHHHHHHHHCCC
Q ss_conf 45256882557527738788999998399919988898714985113568966788610000148949999999985762
Q 003575 641 SNIYTRRVLSGEFIVVNKHLLKDLTELGLWSHALKTKIIYENGSVSKISEIPEELKAIYKTVWEIKQKTLVDMAADRGCY 720 (810)
Q Consensus 641 s~~y~r~~~~G~~~~vn~~l~~~L~~~g~~~~~~~~~i~~~~gsi~~~~~~p~~~k~~f~tA~ei~~~~~i~~~a~~Q~~ 720 (810)
+++|+|++.+|+|.++|++|+++|+++|+|++++++.|+.++||||++|.+|++++++|+|||||+|+++|+|+|++|||
T Consensus 622 s~~y~R~~~~G~~~~vn~~l~~~L~~~g~~~e~~~~~i~~~~Gsvq~i~~lp~~~~~~y~tA~eI~~~~~I~m~A~~Q~~ 701 (792)
T 3hnc_A 622 SNIYTRRVLSGEFQIVNPHLLKDLTERGLWHEEMKNQIIACNGSIQSIPEIPDDLKQLYKTVWEISQKTVLKMAAERGAF 701 (792)
T ss_dssp CSEEEEEETTEEEEEECHHHHHHHHHTTCCCHHHHHHHHHTTTCCTTCTTSCHHHHHHTCCTTTSCHHHHHHHHHHHHTT
T ss_pred HHHHHHHHCCCCEEEECHHHHHHHHHCCCCCHHHHHHHHHCCCCCCCCCCCCHHHHHHHHHHHHCCHHHHHHHHHHHCCC
T ss_conf 17999985058458647999999997499939999999864997136767997798884059738999999999997675
Q ss_pred CCCCCCEEEEECCCCHHHHHHHHHHHHHCCCCEEEEEECCCCCCCCCCCCCCCCCCCCCCCCCCC-CHHHHHHCCCCCCC
Q ss_conf 43464105761799967899999999984996589984375322110013210000111236765-03432100133466
Q 003575 721 IDQSQSLNIHMEQPDHGKLTSLHFYAWSKGMKTGMYYLRTRAAADAIKFTVDTSVLNNEKANRAD-NDVEANLAQVVCSL 799 (810)
Q Consensus 721 vDqsiS~tl~~~~~~~~~i~~~~~~Awk~GlKt~~yY~r~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~ 799 (810)
||||||+|||+++++.++|.++|++||++||||++||+|+++++++++|||+........+.+.. .......++++||+
T Consensus 702 IDqs~S~tl~~~~~t~~~l~~~y~~Awk~GlKt~~YY~Rs~~a~~~~~~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 781 (792)
T 3hnc_A 702 IDQSQSLNIHIAEPNYGKLTSMHFYGWKQGLKTGMYYLRTRPAANPIQFTLNKEKLKDKEKVSKEEEEKERNTAAMVCSL 781 (792)
T ss_dssp CSSCCCCCEECSSCCHHHHHHHHHHHHHTTCSEEESCEECC---------------------------------------
T ss_pred CHHHCCCEEECCCCCHHHHHHHHHHHHHHCCCEEEEEECCCCHHHHHHHCCCHHHHCCCCCCCCCCCCCCCCCCCCCCCC
T ss_conf 33011454635899999999999999984898689985163001003310653431245555420013455301021778
Q ss_pred CCCCCCCCCCC
Q ss_conf 77552355899
Q 003575 800 KNQEECMACGS 810 (810)
Q Consensus 800 ~~~~~c~~c~~ 810 (810)
+|+|.||+||+
T Consensus 782 ~~~~~c~~c~~ 792 (792)
T 3hnc_A 782 ENRDECLMCGS 792 (792)
T ss_dssp -----------
T ss_pred CCCCCCCCCCC
T ss_conf 99400222479
No 2
>3k8t_A Ribonucleoside-diphosphate reductase large chain; eukaryotic ribonucleotide reductase, nucleotide analogs, all enzyme ATP-binding; HET: DGT 2A5; 2.10A {Saccharomyces cerevisiae} PDB: 1zyz_A 2cvs_A 2cvt_A* 2cvu_A* 2cvv_A* 1zzd_A* 2cvw_A* 2cvy_A* 2eud_A* 2zlf_A 2zlg_A* 2cvx_A* 3paw_A 3rsr_A* 3s87_A* 3s8b_A* 3s8c_A* 3s8a_A* 3tb9_A* 3tba_A*
Probab=1.00 E-value=1 Score=1747.46 Aligned_cols=760 Identities=64% Similarity=1.125 Sum_probs=739.4
Q ss_pred CEEECCCCCEECCCHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHCCCCCCHHHHHHH
Q ss_conf 95881499230158568999999988029999879898999998111899998799999999998542079973999999
Q 003575 1 MYVIKRDGRKEPVRFDKITARLKKLSYGLSKEHCDPVLVAQKVCAGVYKGVTTTQLDELAAETAAAMTVNHPDYALLAGR 80 (810)
Q Consensus 1 ~~V~KrdG~~e~~~~~ki~~~i~~a~~~l~~~~v~~~~i~~~~~~~l~d~itt~el~~~li~~a~~~~~~~p~y~~lA~R 80 (810)
|+|+||||+.|||+++||+++|+|+|+||+.+.||+++|+.++..+++|||||+||++++|++|++++.+||||+++|||
T Consensus 1 ~~V~krdG~~e~~~~~ki~~~i~~~~~gl~~~~v~~~~i~~~~~~~~~~gitt~el~~~~i~~a~~~~~~~Pdy~~~AaR 80 (888)
T 3k8t_A 1 MYVYKRDGRKEPVQFDKITARISRLCYGLDPKHIDAVKVTQRIISGVYEGVTTIELDNLAAETCAYMTTVHPDYATLAAR 80 (888)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred CEEEECCCCEEECCHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHCCCCCCHHHHHHH
T ss_conf 94892699654468999999999997156756779999999999754699988999999999999735218778999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHCHHHHHHHHCCCCCCCCCHHHHHHHHHHHCCCCC
Q ss_conf 99998888951202599999999944301764457664799999960999975411235678880449999974136459
Q 003575 81 VAVSNLHKITKNSFSETIKDMYNYYNKRSGKKASLVADDVYEIIMKNAACLDGAIIYDRDFDFDYFGFKTLERSYLLKMD 160 (810)
Q Consensus 81 l~~~~l~k~~~~~~~~~~~~l~~~~~~~~~~~~~l~~~~~~~~~~~~~~~l~~~i~~~rd~~f~y~g~~~l~~~Yllk~~ 160 (810)
|++++|||++.++|++++.+|++|++.++|+..+++++++|+++.+++++|++.|+|+||+.|+|+|+++|+++||+|.+
T Consensus 81 l~~~~l~k~~~~~f~~~~~~~~~~~~~~~g~~~~li~~~~~~~~~~~~~~L~~~i~~~RD~~f~y~g~~~L~~rYllk~~ 160 (888)
T 3k8t_A 81 IAISNLHKQTTKQFSKVVEDLYRYVNAATGKPAPMISDDVYNIVMENKDKLNSAIVYDRDFQYSYFGFKTLERSYLLRIN 160 (888)
T ss_dssp ---------CCCCHHHHHHHHHTCEETTTTEECCSSCHHHHHHHHHTHHHHHTTCCGGGGGGSCHHHHHHHHHHTSCEET
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHHHHHCHHCCCCCCHHHHHHHHHCCCCCCC
T ss_conf 99999999987655378999998740430554343477899999999999997747211468986889999863454649
Q ss_pred CCCCCCHHHHHHHHHHHHCCCCHHHHHHHHHHHHCCCEECCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHH
Q ss_conf 93258989999999824216891789999999743822037762024589988876533333457986879999999999
Q 003575 161 SRVVERPQHMLMRVSVGIHKDDTDSALKTYHLMSQHWFTHATPTLFNAGTPQPQLSSCFLLCMKDDSIEGIYDTLKKCAI 240 (810)
Q Consensus 161 g~~~E~pq~~~~rvA~~l~~~~~~~~~~~y~~ls~~~~~~atP~l~naGt~~~~lsSCfl~~~~~Ds~~~I~~~~~~~a~ 240 (810)
|+++|+||+||||||++|+.++++++++||++||+++|+||||||+|+|++++|||||||+++.+||++||+++++++++
T Consensus 161 g~~~E~pq~~~mRVA~~la~~~~~~a~~fY~~ms~~~f~paTPtL~NAGt~~~qlsSCFll~~~~DSl~gI~~~~~~~a~ 240 (888)
T 3k8t_A 161 GQVAERPQHLIMRVALGIHGRDIEAALETYNLMSLKYFTHASPTLFNAGTPKPQMSSCFLVAMKEDSIEGIYDTLKECAL 240 (888)
T ss_dssp TEECCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTSEEECHHHHHHTTSSSCCCCCEEEEECCCSSHHHHHHHHHHHHH
T ss_pred CCEEECHHHHHHHHHHHHCCCCHHHHHHHHHHHHCCCCCCCCHHHHCCCCCCCCCCCEECCCCCCCCHHHHHHHHHHHHH
T ss_conf 98702899999999998662369999999999970881259866534899988777533247787518999999999999
Q ss_pred HHHHCCCCCEEEEEECCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHCCCCCCCCEEEEECCCCCCHHHHHHHHHHCCC
Q ss_conf 99753975200002337998335788877784118999999999974089734573288504786668999995230593
Q 003575 241 ISKSAGGIGLSIHNIRASGSYIHGTNGSSNGIVPMLQVFNDTARYVDQGGGKRKGAFAIYLEPWHADIFEFLDLRKNQGK 320 (810)
Q Consensus 241 i~k~ggGiG~~~s~iR~~Gs~I~g~~g~ssG~vpflk~~~~~~~~v~qgG~~Rrga~~~~l~~wH~DI~~Fl~~K~~~g~ 320 (810)
++|+|||||+|||+|||+|++|+|++|+|||||||||+||+++.+|+|||++||||+|+||++|||||++||++|+++|+
T Consensus 241 isK~GGGiG~~~s~iR~~Gs~I~g~~g~ssG~Vpfmkv~d~~~~~v~QgG~~RrGA~~vyL~vwHpDI~eFL~~K~~~g~ 320 (888)
T 3k8t_A 241 ISKTAGGIGLHIHNIRSTGSYIAGTNGTSNGLIPMIRVFNNTARYVDQGGNKRPGAFALYLEPWHADIFDFIDIRKNHGK 320 (888)
T ss_dssp HHTTCCEEEEECTTSCCTTCEETTTTEECCCHHHHHHHHHHHHHHCCTTC---CCCEEEEECTTBTTHHHHTTTTCSSSC
T ss_pred HHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHCCCCCCCCEEEEECCCCCHHHHHHHHHHHCCC
T ss_conf 99847876313455377878046889877986009998999999998089853663468855887109999998651481
Q ss_pred CCCCCCCCCEECCCCHHHHHHHHCCCCEEEECCCCCCCCHHHHHHHHHHHHHHHHHCCCEEEEEEHHHHHHHHHHHHHHH
Q ss_conf 10000135300224988899986599658766798897211120269999999988094038972999999999987741
Q 003575 321 EECRARDLFYALWVPDLFMERVRDDGKWSLFCPSDASGLADSWGIEFEHLYSQYEEEGRAKMVISARKLWFEILNSQIET 400 (810)
Q Consensus 321 ~~~r~~~~~~sv~i~D~Fm~~v~~~~~w~Lf~P~~~~~L~~~~g~eF~~~Y~~~e~~~~~~~~i~Ar~l~~~I~~~~~et 400 (810)
+++|++++|+||||||+|||||++|++|+||+|+++|+|+++||++|+++|++||+++.. ++|+||+||++|++++|+|
T Consensus 321 e~~R~~~l~~sV~IpD~FMe~V~~d~~w~Lf~P~~~p~L~d~yG~eFe~~Y~~ye~~g~~-k~V~AreLw~~I~~~~~et 399 (888)
T 3k8t_A 321 EEIRARDLFPALWIPDLFMKRVEENGTWTLFSPTSAPGLSDCYGDEFEALYTRYEKEGRG-KTIKAQKLWYSILEAQTET 399 (888)
T ss_dssp STTCCTTEEEEEEECHHHHHHHHTTCEEEEBCTTTSTTGGGCCHHHHHHHHHHHHHTTCS-EEEEHHHHHHHHHHHHHHH
T ss_pred HHHHHHHCEEEEEECHHHHHHHHCCCCEEEECCCCCCCHHHHHCHHHHHHHHHHHHCCCE-EEEEHHHHHHHHHHHHHHH
T ss_conf 656464172121109999999866998798566457507665146899999999865971-4877999999999999984
Q ss_pred CCCEEEECHHHHHHCCCCCCCEEEEECCCCCCCCCCCCCCCEEEECCCCCCHHHHHCCCCCCCCCCCCCCCCCCCCCCCC
Q ss_conf 77305720136641898998807753389643446899972010115457012220059764455422125678888667
Q 003575 401 GTPYMLFKDSCNRKSNQQNLGTIKSSNLCTEIVEFSSPEETAVCNLASIALPRYVREKGVPVQSNVSKLVGSRDSKNRLF 480 (810)
Q Consensus 401 G~P~i~f~D~~Nr~~~~~~~g~I~~sNlC~EI~~~~~~~e~~~CNL~sinL~~~v~~~~~~~~~~~~~~~~~~~~~~~~f 480 (810)
|+|||+|+|+||++||+++.|+|++||||+||+||++++|+++|||+||||++|+.++. .+..+.|
T Consensus 400 G~P~i~f~D~iNr~n~~~~~G~I~~SNlC~EI~~~~~~~e~avCNLgSINL~~fv~~~~--------------~~~~~~f 465 (888)
T 3k8t_A 400 GTPFVVYKDACNRKSNQKNLGVIKSSNLCCEIVEYSAPDETAVCNLASVALPAFIETSE--------------DGKTSTY 465 (888)
T ss_dssp SCCEEEEHHHHHHTCTTTTTCCCCCCCTTSCCCCCCBTTBCEEECEEEEEGGGGBC-------------------CCCCB
T ss_pred CCCEEEEHHHHHHCCCCCCCCEEEEECCCCCCCCCCCCCCCEEEECHHHHHHHHHCCCC--------------CCCCCCC
T ss_conf 89858862677726998667818884366664677899971388327853999962203--------------4554667
Q ss_pred CHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHCCCCCEEECCHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHHH
Q ss_conf 98899999999999999887418998488999851159702115049999998299999998899999999999999999
Q 003575 481 DFERLAEVTKIITENLNKIIDVNHYPIETTRRSNLRHRPIGIGIQGLADTFILLGLPFESPEAQQLNKDIFETIYYHALK 560 (810)
Q Consensus 481 d~~~l~~~v~~avr~LD~vId~~~~p~~~~~~~~~~~R~IGiGv~Glad~L~~~gi~y~S~ea~~l~~~i~e~i~~~a~~ 560 (810)
||+.|+++|+++||+||+|||.+.||+|+++++++++|+||||+|||||+|+++|++|+|+||++|+++|||.|+|+|++
T Consensus 466 D~~~l~~~v~~avR~LDnVID~n~yP~~~a~~~n~~~R~IGLGvmGlad~L~~lgi~Y~S~eA~~l~~~i~e~I~~~A~~ 545 (888)
T 3k8t_A 466 NFKKLHEIAKVVTRNLNRVIDRNYYPVEEARKSNMRHRPIALGVQGLADTFMLLRLPFDSEEARLLNIQIFETIYHASME 545 (888)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHCCCSSHHHHHHHHHHCCCEEEEECHHHHHHHHTCCTTSHHHHHHHHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHCCCCCCCCHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHHH
T ss_conf 99999999999999999998725883799999977369723249999999997799879999999999999999999999
Q ss_pred HHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHCCCCCCCEECCCCCCCHHHHCCCCCCCCCCC
Q ss_conf 99999997099999979966667643201247999801389999999842865543001499953110048975222355
Q 003575 561 ASAELAVKDGPYETYFGSPMSKGILQVDMWNITPSDRWDWSSLREMISKNGVRNSLLVAPMPTASTSQILGNNECFEPYT 640 (810)
Q Consensus 561 aS~eLAkE~G~~~~f~~S~~~~G~l~~d~~~~~~~~~~~W~~Lr~~i~~~G~RNs~l~AiaPT~s~S~i~g~t~gieP~~ 640 (810)
||++||+|+|+||.|++|+|++|+|++|.|...|...+||++||++|++||+|||+++|||||||||+|+|+|+||||+|
T Consensus 546 AS~eLAkErG~fp~F~~S~~~~G~l~~d~~~~~p~~~~dW~~Lre~I~k~GlRNs~llAiAPTgSiS~I~g~s~sIEP~f 625 (888)
T 3k8t_A 546 ASCELAQKDGPYETFQGSPASQGILQFDMWDQKPYGMWDWDTLRKDIMKHGVRNSLTMAPMPTASTSQILGYNECFEPVT 625 (888)
T ss_dssp HHHHHHHHHCCCTTCTTSGGGGTCCHHHHTTCCCCCSSCHHHHHHHHHHHCCSCSCCBCCCCCTTHHHHHTCCCTTCCCS
T ss_pred HHHHHHHHHCCCCCCCCCHHHCCCCCHHHCCCCCHHHCCHHHHHHHHHHHCCCCCCCCCCCCCHHHHHHCCCCCCCCCCH
T ss_conf 99999998588988777810146641222037861220499999999762854304637899503777338776427351
Q ss_pred CCEEEEECCCCCEEEECHHHHHHHHHCCCCHHHHHHHHHHCCCCCCCCCCCCHHHHHHCCCCCCCCHHHHHHHHHHHCCC
Q ss_conf 45256882557527738788999998399919988898714985113568966788610000148949999999985762
Q 003575 641 SNIYTRRVLSGEFIVVNKHLLKDLTELGLWSHALKTKIIYENGSVSKISEIPEELKAIYKTVWEIKQKTLVDMAADRGCY 720 (810)
Q Consensus 641 s~~y~r~~~~G~~~~vn~~l~~~L~~~g~~~~~~~~~i~~~~gsi~~~~~~p~~~k~~f~tA~ei~~~~~i~~~a~~Q~~ 720 (810)
+++|.|++.+|+|+++|++|+++|+++|+|++++++.|+.++|++|.+|.+|++++++|+|||||+|+++|+|+|++|||
T Consensus 626 s~~y~R~~~~G~~~vvN~~l~~~L~~~g~~~~~~~~~i~~~~Gsvq~ip~lp~~~k~~f~tA~eI~~~~~I~m~A~~Q~~ 705 (888)
T 3k8t_A 626 SNMYSRRVLSGEFQVVNPYLLRDLVDLGIWDEGMKQYLITQNGSIQGLPNVPQELKDLYKTVWEISQKTIINMAADRSVY 705 (888)
T ss_dssp CSBC---------CCBCHHHHHHHHHTTCCSHHHHHHHHTTTTCCTTCTTSCHHHHHHTCCGGGSCHHHHHHHHHHHHTT
T ss_pred HHHHHHHHCCCCEEEECHHHHHHHHHCCCCCHHHHHHHHHCCCCEECCCCCCHHHHHHHHHHHHCCHHHHHHHHHHHCCC
T ss_conf 14676433057504427999999997499809999999863996605877997898984217508999999999997675
Q ss_pred CCCCCCEEEEECCCCHHHHHHHHHHHHHCCCCEEEEEECCCCCCCCCCCCCCCCC
Q ss_conf 4346410576179996789999999998499658998437532211001321000
Q 003575 721 IDQSQSLNIHMEQPDHGKLTSLHFYAWSKGMKTGMYYLRTRAAADAIKFTVDTSV 775 (810)
Q Consensus 721 vDqsiS~tl~~~~~~~~~i~~~~~~Awk~GlKt~~yY~r~~~~~~~~~~~~~~~~ 775 (810)
||||||+|||+++++.++|.++|++||++||||+|||+|+++++++++|||+...
T Consensus 706 IDQs~S~tl~~~~~t~~dl~~~y~~Awk~GLKt~~YY~Rt~~a~~~~~~t~~~~~ 760 (888)
T 3k8t_A 706 IDQSHSLNLFLRAPTMGKLTSMHFYGWKKGLKTGMYYLRTQAASAAIQFTIDQKI 760 (888)
T ss_dssp CSSCCCCCEECSSCCHHHHHHHHHHHHHHTCSEEESCEECC--------------
T ss_pred CHHHCCCEEECCCCCHHHHHHHHHHHHHHCCCEEEEEECCCCHHHHHHHCCCHHH
T ss_conf 3311146475699999999999999998389867998317523322301245888
No 3
>2wgh_A Ribonucleoside-diphosphate reductase large subunit; DNA replication, allosteric enzyme, nucleotide-binding, cytoplasm, ATP-binding, polymorphism; HET: DTP; 2.30A {Homo sapiens}
Probab=1.00 E-value=1 Score=1504.38 Aligned_cols=670 Identities=69% Similarity=1.173 Sum_probs=653.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHCHHHHHHHHCCCCCCCCCHHHHHHHHHH
Q ss_conf 99999999998888951202599999999944301764457664799999960999975411235678880449999974
Q 003575 75 ALLAGRVAVSNLHKITKNSFSETIKDMYNYYNKRSGKKASLVADDVYEIIMKNAACLDGAIIYDRDFDFDYFGFKTLERS 154 (810)
Q Consensus 75 ~~lA~Rl~~~~l~k~~~~~~~~~~~~l~~~~~~~~~~~~~l~~~~~~~~~~~~~~~l~~~i~~~rd~~f~y~g~~~l~~~ 154 (810)
.++||||++++|||++.++|++++..++.|+++++|++.+++++++|+++.++.++|++.|+|+||+.|+|+|+++|+++
T Consensus 2 ~~~aarl~~~~l~k~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~l~~~i~~~rd~~f~~~g~~~l~~~ 81 (676)
T 2wgh_A 2 AILAARIAVSNLHKETKKVFSDVMEDLYNYINPHNGKHSPMVAKSTLDIVLANKDRLNSAIIYDRDFSYNYFGFKTLERS 81 (676)
T ss_dssp --CHHHHHHHHHHHTSCSCHHHHHHHHHHCBCTTTCCBCCSSCHHHHHHHHHTHHHHHHTCCGGGGGGSCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHCHHHHHHHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHH
T ss_conf 49999999999999977656588999999853201441543077899999999999998858021378888899999964
Q ss_pred HCCCCCCCCCCCHHHHHHHHHHHHCCCCHHHHHHHHHHHHCCCEECCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHH
Q ss_conf 13645993258989999999824216891789999999743822037762024589988876533333457986879999
Q 003575 155 YLLKMDSRVVERPQHMLMRVSVGIHKDDTDSALKTYHLMSQHWFTHATPTLFNAGTPQPQLSSCFLLCMKDDSIEGIYDT 234 (810)
Q Consensus 155 Yllk~~g~~~E~pq~~~~rvA~~l~~~~~~~~~~~y~~ls~~~~~~atP~l~naGt~~~~lsSCfl~~~~~Ds~~~I~~~ 234 (810)
|++|.+|+++|+||++|||||++++..+.+.+++||++|++++|+||||||+|+||+++||+||||+++++||++||+++
T Consensus 82 Yllk~~g~~~E~pq~~~~RVA~~la~~~~~~a~~~y~~ls~~~f~patPtl~naGt~~~qlssCfl~~v~~Dsl~gI~~~ 161 (676)
T 2wgh_A 82 YLLKINGKVAERPQHMLMRVSVGIHKEDIDAAIETYNLLSERWFTHASPTLFNAGTNRPQLSSCFLLSMKDDSIEGIYDT 161 (676)
T ss_dssp TSCEETTEECCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTSEEECHHHHHHTTSSSCCCCCEEEEECCCSSHHHHHHH
T ss_pred CCCCCCCCCCCCHHHHHHHHHHHHCCCCHHHHHHHHHHHHHCCCCCCCHHHHCCCCCCCCCCCEEEECCCCCCHHHHHHH
T ss_conf 04466997257999999999998713379999999999981985367467763788888777727626776517899999
Q ss_pred HHHHHHHHHHCCCCCEEEEEECCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHCCCCCCCCEEEEECCCCCCHHHHHHH
Q ss_conf 99999999753975200002337998335788877784118999999999974089734573288504786668999995
Q 003575 235 LKKCAIISKSAGGIGLSIHNIRASGSYIHGTNGSSNGIVPMLQVFNDTARYVDQGGGKRKGAFAIYLEPWHADIFEFLDL 314 (810)
Q Consensus 235 ~~~~a~i~k~ggGiG~~~s~iR~~Gs~I~g~~g~ssG~vpflk~~~~~~~~v~qgG~~Rrga~~~~l~~wH~DI~~Fl~~ 314 (810)
++++++++|.|||||+|||+|||+|++|+|++|+|||||||||+||+++.+|+|||++||||.|+||++|||||++||++
T Consensus 162 ~~~~a~i~k~gGGvG~~~s~iR~~Gs~I~g~~g~ssG~vpfmk~~d~~~~~v~QgG~~RrGA~~~~l~~~HpDI~eFl~~ 241 (676)
T 2wgh_A 162 LKQCALISKSAGGIGVAVSCIRATGSYIAGTNGNSNGLVPMLRVYNNTARYVDQGGNKRPGAFAIYLEPWHLDIFEFLDL 241 (676)
T ss_dssp HHHHHHHHHTTCEEEEECTTSCCTTCEEGGGTEECCCHHHHHHHHHHHHHHSCSTTSSCCCCEEEEECTTBTTHHHHTTT
T ss_pred HHHHHHHHHCCCCCEECCEEECCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHCCCCCCCCEEEEECCCCHHHHHHHHH
T ss_conf 99999997328975121100368998136889878994369999999999998468844775369867987169999986
Q ss_pred HHHCCCCCCCCCCCCEECCCCHHHHHHHHCCCCEEEECCCCCCCCHHHHHHHHHHHHHHHHHCCCEEEEEEHHHHHHHHH
Q ss_conf 23059310000135300224988899986599658766798897211120269999999988094038972999999999
Q 003575 315 RKNQGKEECRARDLFYALWVPDLFMERVRDDGKWSLFCPSDASGLADSWGIEFEHLYSQYEEEGRAKMVISARKLWFEIL 394 (810)
Q Consensus 315 K~~~g~~~~r~~~~~~sv~i~D~Fm~~v~~~~~w~Lf~P~~~~~L~~~~g~eF~~~Y~~~e~~~~~~~~i~Ar~l~~~I~ 394 (810)
|+++|++++|++++|+||||||+||+||++|++|+||+|+++|+|.++||++|+++|.+|++++..+++|+||+||++|+
T Consensus 242 K~~~g~e~~r~~~l~~sv~i~D~Fm~~v~~d~~w~L~~P~~~~~l~~~yg~~f~~~Y~~~~~~~~~~k~v~Ar~L~~~I~ 321 (676)
T 2wgh_A 242 KKNTGKEEQRARDLFFALWIPDLFMKRVETNQDWSLMCPNECPGLDEVWGEEFEKLYASYEKQGRVRKVVKAQQLWYAII 321 (676)
T ss_dssp TCSSSCGGGCCTTSEEEEEECHHHHHHHHTTCEEEEBCTTTSTTGGGCCTHHHHHHHHHHHHTTCCSEEEEHHHHHHHHH
T ss_pred HCCCCCHHHHHHHCCHHHCCCHHHHHHHHCCCCEEEECCCCCCCHHHHHCHHHHHHHHHHHHCCCCEEEEEHHHHHHHHH
T ss_conf 13366266656534023213999999998499759978544653666514489999999986796126866999999999
Q ss_pred HHHHHHCCCEEEECHHHHHHCCCCCCCEEEEECCCCCCCCCCCCCCCEEEECCCCCCHHHHHCCCCCCCCCCCCCCCCCC
Q ss_conf 98774177305720136641898998807753389643446899972010115457012220059764455422125678
Q 003575 395 NSQIETGTPYMLFKDSCNRKSNQQNLGTIKSSNLCTEIVEFSSPEETAVCNLASIALPRYVREKGVPVQSNVSKLVGSRD 474 (810)
Q Consensus 395 ~~~~etG~P~i~f~D~~Nr~~~~~~~g~I~~sNlC~EI~~~~~~~e~~~CNL~sinL~~~v~~~~~~~~~~~~~~~~~~~ 474 (810)
+++|+||+|||+|+|+||++||+++.|+|++||||+||+||++|+|+++|||+||||++|+..
T Consensus 322 ~~~~etG~Pgi~f~D~~N~~~~~~~~g~I~~SNpC~EI~~~~~~~e~~~CNL~SiNL~~~v~~----------------- 384 (676)
T 2wgh_A 322 ESQTETGTPYMLYKDSCNRKSNQQNLGTIKCSNLCTEIVEYTSKDEVAVCNLASLALNMYVTS----------------- 384 (676)
T ss_dssp HHHHHHSCCEEEEHHHHHHTCTTGGGCCCCCCCTTSCCCCCCBTTBCEEECEEEEEGGGGBCT-----------------
T ss_pred HHHHHHCCCEEEECHHHHHCCCCCCCCCEEECCCCCCCCCCCCCCCEEEEECCCCCHHHHHCC-----------------
T ss_conf 999997898588504345348877778078514650312668788645786243319999533-----------------
Q ss_pred CCCCCCCHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHCCCCCEEECCHHHHHHHHCCCCCCCHHHHHHHHHHHHHH
Q ss_conf 88866798899999999999999887418998488999851159702115049999998299999998899999999999
Q 003575 475 SKNRLFDFERLAEVTKIITENLNKIIDVNHYPIETTRRSNLRHRPIGIGIQGLADTFILLGLPFESPEAQQLNKDIFETI 554 (810)
Q Consensus 475 ~~~~~fd~~~l~~~v~~avr~LD~vId~~~~p~~~~~~~~~~~R~IGiGv~Glad~L~~~gi~y~S~ea~~l~~~i~e~i 554 (810)
.+.|||+.|+++|+++||+||+|||.+.||+|+++++++++|+||||+|||||+|+++|++|+|+||++++++|||.|
T Consensus 385 --~~~~D~~~l~~~v~~avr~Ld~vid~~~yp~~~~~~~~~~~R~IGlGv~Glad~L~~~gi~Y~S~ea~~~~~~i~e~i 462 (676)
T 2wgh_A 385 --EHTYDFKKLAEVTKVVVRNLNKIIDINYYPVPEACLSNKRHRPIGIGVQGLADAFILMRYPFESAEAQLLNKQIFETI 462 (676)
T ss_dssp --TSCBCHHHHHHHHHHHHHHHHHHHHHCCCSSHHHHHHHHHHCCCEEEEECHHHHHHHTTCCTTSHHHHHHHHHHHHHH
T ss_pred --CCCCCHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHCCCCCEECHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHH
T ss_conf --578898999999999999999999668873799999987179716619999999997799889999999999999999
Q ss_pred HHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHCCCCCCCEECCCCCCCHHHHCCCCC
Q ss_conf 99999999999997099999979966667643201247999801389999999842865543001499953110048975
Q 003575 555 YYHALKASAELAVKDGPYETYFGSPMSKGILQVDMWNITPSDRWDWSSLREMISKNGVRNSLLVAPMPTASTSQILGNNE 634 (810)
Q Consensus 555 ~~~a~~aS~eLAkE~G~~~~f~~S~~~~G~l~~d~~~~~~~~~~~W~~Lr~~i~~~G~RNs~l~AiaPT~s~S~i~g~t~ 634 (810)
+|+|++||++||+|+|+||.|++|+|++|+|++|.|...|+..+||++|+++|++||+|||+++|||||||||+|+|+|+
T Consensus 463 ~~~A~~aS~eLA~e~G~f~~f~~s~~~~G~~~~d~~~~~~~~~~dW~~Lr~~i~~~G~RNs~l~aiaPTgTiS~i~g~s~ 542 (676)
T 2wgh_A 463 YYGALEASCDLAKEQGPYETYEGSPVSKGILQYDMWNVTPTDLWDWKVLKEKIAKYGIRNSLLIAPMPTASTAQILGNNE 542 (676)
T ss_dssp HHHHHHHHHHHHHHHCCCTTCTTSSGGGTCCHHHHTTCCCCSSSCHHHHHHHHHHHCCSCSCCBCCCCCTTHHHHHTCCC
T ss_pred HHHHHHHHHHHHHHHCCCCCCCCCHHHCCCCCHHHHHCCCCCHHHHHHHHHHHHHHCCCCCEEEECCCCCCEEEECCCCC
T ss_conf 99999999999997398866655824316751235406897144299999999985872010242268755553138887
Q ss_pred CCCCCCCCEEEEECCCCCEEEECHHHHHHHHHCCCCHHHHHHHHHHCCCCCCCCCCCCHHHHHHCCCCCCCCHHHHHHHH
Q ss_conf 22235545256882557527738788999998399919988898714985113568966788610000148949999999
Q 003575 635 CFEPYTSNIYTRRVLSGEFIVVNKHLLKDLTELGLWSHALKTKIIYENGSVSKISEIPEELKAIYKTVWEIKQKTLVDMA 714 (810)
Q Consensus 635 gieP~~s~~y~r~~~~G~~~~vn~~l~~~L~~~g~~~~~~~~~i~~~~gsi~~~~~~p~~~k~~f~tA~ei~~~~~i~~~ 714 (810)
||||+|+++|+|++++|+|+++|++|+++|+++|+|++++++.|+.++|+++.+|.+|++++++|+|||||+|+++|+|+
T Consensus 543 gIeP~~s~~y~R~~~~g~~~~vn~~l~~~L~~~G~~~e~~~~~i~~~~Gsv~~~p~lp~~~~~~f~tA~ei~~~~~i~~~ 622 (676)
T 2wgh_A 543 SIEPYTSNIYTRRVLSGEFQIVNPHLLKDLTERGLWHEEMKNQIIACNGSIQSIPEIPDDLKQLYKTVWEISQKTVLKMA 622 (676)
T ss_dssp TTCCCCCSBC---------CCBCHHHHHHHHHHTC-------------CCCTTCSSSCHHHHHHTCCTTSSCHHHHHHHH
T ss_pred CCCCCCCHHEEEECCCCCEEECCHHHHHHHHHCCCCHHHHHHHHHHCCCCEECCCCCCHHHHHHHCCHHHCCHHHHHHHH
T ss_conf 22705210315762567335237899999998399849999999864993714777997899882788648999999999
Q ss_pred HHHCCCCCCCCCEEEEECCCCHHHHHHHHHHHHHCCCCEEEEEECCCCC
Q ss_conf 9857624346410576179996789999999998499658998437532
Q 003575 715 ADRGCYIDQSQSLNIHMEQPDHGKLTSLHFYAWSKGMKTGMYYLRTRAA 763 (810)
Q Consensus 715 a~~Q~~vDqsiS~tl~~~~~~~~~i~~~~~~Awk~GlKt~~yY~r~~~~ 763 (810)
|++|||||||||+|||+++++.++|.++|++||++||||++||||++.-
T Consensus 623 a~~Q~~iDqsiS~tl~~~~~t~~~l~~~y~~Awk~GlKt~~yy~r~~~~ 671 (676)
T 2wgh_A 623 AERGAFIDQSQSLNIHIAEPNYGKLTSMHFYGWKQGLKTGMYYLRTRAH 671 (676)
T ss_dssp HHHHTTCSSCCCCCEECSSCCHHHHHHHHHHHHHTTCSEEESCEECC--
T ss_pred HHHCCCCCCCCCEEEECCCCCHHHHHHHHHHHHHHCCCEEEEEEEEECC
T ss_conf 9967777666643786499999999999999998199779999987423
No 4
>2xap_A Ribonucleoside-diphosphate reductase 1 subunit alpha; oxidoreductase, DNA replication, allosteric enzyme, nucleotide-binding; HET: NIY; 2.10A {Escherichia coli} PDB: 2xo5_A* 2x0x_A 2r1r_A 3r1r_A* 3uus_A* 1r1r_A 2xav_A* 7r1r_A 2xax_A* 6r1r_A 2xaw_A* 5r1r_A 2xo4_A* 2xak_A* 4r1r_A* 2xaz_A* 2xay_A* 1rlr_A 1qfn_B
Probab=1.00 E-value=1 Score=1498.56 Aligned_cols=702 Identities=29% Similarity=0.467 Sum_probs=658.4
Q ss_pred CEEECCCCCEECCCHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHCC-CCCCHHHHHH
Q ss_conf 958814992301585689999999880299998798989999981118999987999999999985420-7997399999
Q 003575 1 MYVIKRDGRKEPVRFDKITARLKKLSYGLSKEHCDPVLVAQKVCAGVYKGVTTTQLDELAAETAAAMTV-NHPDYALLAG 79 (810)
Q Consensus 1 ~~V~KrdG~~e~~~~~ki~~~i~~a~~~l~~~~v~~~~i~~~~~~~l~d~itt~el~~~li~~a~~~~~-~~p~y~~lA~ 79 (810)
|+|+||||+.|||+++||+++|+|+|+||+ .||+.+|+.++..+++|||||+|||+++|++|+.+++ ++|||+.+||
T Consensus 5 ~~v~krdG~~e~~~~~ki~~~i~~~~~~l~--~~~~~~~~~~~~~~~~~~~tt~ei~~~~~~~a~~~~~~~~p~~~~~Aa 82 (761)
T 2xap_A 5 LLVTKRDGSTERINLDKIHRVLDWAAEGLH--NVSISQVELRSHIQFYDGIKTSDIHETIIKAAADLISRDAPDYQYLAA 82 (761)
T ss_dssp CEEECSSSCEEECCHHHHHHHHHHHHTTCS--SCCHHHHHHHHHTTCCTTEEHHHHHHHHHHHHHHTCCSSSTTHHHHHH
T ss_pred EEEEECCCCCCCCCHHHHHHHHHHHHCCCC--CCCHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHCCCCCCCHHHHHH
T ss_conf 389967995525789999999999970577--899999999998514699999999999999999855823867799999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCHHHHH-HHHHCHHHHHHHHCCCCCCCCCHHHHHHHHHHHCCC
Q ss_conf 9999988889512025999999999443017644576647999-999609999754112356788804499999741364
Q 003575 80 RVAVSNLHKITKNSFSETIKDMYNYYNKRSGKKASLVADDVYE-IIMKNAACLDGAIIYDRDFDFDYFGFKTLERSYLLK 158 (810)
Q Consensus 80 Rl~~~~l~k~~~~~~~~~~~~l~~~~~~~~~~~~~l~~~~~~~-~~~~~~~~l~~~i~~~rd~~f~y~g~~~l~~~Yllk 158 (810)
||++++|||++.++|.. ..|++++. ..+..+++++++++ |+.+++++|++.|+|+||+.|+|+|+++|+++|++|
T Consensus 83 rl~~~~l~k~~~~~~~~--~~~~~~~~--~~~~~~~~~~~~~~~y~~~~~~~l~~~i~~~rd~~~~~~g~~~l~~rYllk 158 (761)
T 2xap_A 83 RLAIFHLRKKAYGQFEP--PALYDHVV--KMVEMGKYDNHLLEDYTEEEFKQMDTFIDHDRDMTFSYAAVKQLEGKYLVQ 158 (761)
T ss_dssp HHHHHHHHHHHHSSSSC--CCHHHHHH--HHHHTTSSCTHHHHHSCHHHHHHHHHHCCGGGGGGCCHHHHHHHHHHTSCB
T ss_pred HHHHHHHHHHHHCCCCH--HHHHHHHH--HHHHCCHHHHHHHHHCCHHHHHHHHHHHCCCCCCCCCHHHHHHHHHCCCCC
T ss_conf 99999999997634676--77999999--887312113788864369999999966461114788878999998545874
Q ss_pred C--CCCCCCCHHHHHHHHHHHHCCCC-----HHHHHHHHHHHHCCCEECCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHH
Q ss_conf 5--99325898999999982421689-----1789999999743822037762024589988876533333457986879
Q 003575 159 M--DSRVVERPQHMLMRVSVGIHKDD-----TDSALKTYHLMSQHWFTHATPTLFNAGTPQPQLSSCFLLCMKDDSIEGI 231 (810)
Q Consensus 159 ~--~g~~~E~pq~~~~rvA~~l~~~~-----~~~~~~~y~~ls~~~~~~atP~l~naGt~~~~lsSCfl~~~~~Ds~~~I 231 (810)
. +|+++|+||++|||||++++..+ .+++++||++|++++|+||||||+|+|++++||+||||+++ +||++||
T Consensus 159 ~~~~g~~~E~pq~~~~RVA~~la~~e~~~~~~~~a~~fy~~ls~~~~~patPtl~naGt~~~qlssCFl~~v-~Dsle~I 237 (761)
T 2xap_A 159 NRVTGEIYESAQFLYILVAACLFSNYPRETRLQYVKRFYDAVSTFKISLPTPIMSGVRTPTRQFSSCVLIEC-GDSLDSI 237 (761)
T ss_dssp CTTTCCBCCCHHHHHHHHHHHHTTTSCTTTHHHHHHHHHHHHHTTSEECCHHHHHHTTSSCCCCCCEEEEEC-CSSHHHH
T ss_pred CCCCCCEECCHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHCCCCCCCCHHHHCCCCCCCCCCEEEEECC-CCCHHHH
T ss_conf 499995532899999999999853086101799999999999819867886545417888887620898428-8977899
Q ss_pred HHHHHHHHHHHHHCCCCCEEEEEECCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHCCCCCCCCEEEEECCCCCCHHHH
Q ss_conf 99999999999753975200002337998335788877784118999999999974089734573288504786668999
Q 003575 232 YDTLKKCAIISKSAGGIGLSIHNIRASGSYIHGTNGSSNGIVPMLQVFNDTARYVDQGGGKRKGAFAIYLEPWHADIFEF 311 (810)
Q Consensus 232 ~~~~~~~a~i~k~ggGiG~~~s~iR~~Gs~I~g~~g~ssG~vpflk~~~~~~~~v~qgG~~Rrga~~~~l~~wH~DI~~F 311 (810)
++++++++++++.|||||+|||+|||+|++|+|++|+|||||||||+||+++.+|+||| +||||.|+||++|||||++|
T Consensus 238 ~~~~~~~~~~~s~ggGvG~~~s~iR~~Gs~I~g~~g~ssG~vpfmk~~d~~~~~v~QgG-~RrGA~~vyL~~~HpDI~eF 316 (761)
T 2xap_A 238 NATSSAIVKYVSQRAGIGINAGRIRALGSPIRGGEAFHTGCIPFYKHFQTAVKSCSQGG-VRGGAATLFYPMWHLEVESL 316 (761)
T ss_dssp HHHHHHHHHHHTTTCEEEEECTTSCCTTCC------CCSCHHHHHHHHHHHHTTTSTTS-SSSCEEEEEEETTBTTHHHH
T ss_pred HHHHHHHHHHHHHCCCCCEEEEECCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHCCC-CCCCCEEEEECCCCCHHHHH
T ss_conf 99999999998638925011000078988278988868881779999999999997069-75776247855888049999
Q ss_pred HHHHHHCCCCCCCCCCCCEECCCCHHHHHHHHCCCCEEEECCCCCCCCHHHH---HHHHHHHHHHHHHCCC-EEEEEEHH
Q ss_conf 9952305931000013530022498889998659965876679889721112---0269999999988094-03897299
Q 003575 312 LDLRKNQGKEECRARDLFYALWVPDLFMERVRDDGKWSLFCPSDASGLADSW---GIEFEHLYSQYEEEGR-AKMVISAR 387 (810)
Q Consensus 312 l~~K~~~g~~~~r~~~~~~sv~i~D~Fm~~v~~~~~w~Lf~P~~~~~L~~~~---g~eF~~~Y~~~e~~~~-~~~~i~Ar 387 (810)
|++|+++|++++|++++|+||||||+|||+|++|++|+||+|+++|+|++.| |++|+++|.+|++++. .+++|+||
T Consensus 317 l~~K~~~g~e~~r~~~l~~~v~i~D~Fm~~v~~d~~w~Lf~P~~~~~l~~~~~~~~~~f~~~Y~~~~~~~~i~~~~v~Ar 396 (761)
T 2xap_A 317 LVLKNNRGVEGNRVRHMDYGVQINKLMYTRLLKGEDITLFSPSDVPGLYDAFFADQEEFERLYTKYEKDDSIRKQRVKAV 396 (761)
T ss_dssp HTTTCSSSCGGGCCTTSEEEEEECHHHHHHHHHTCEEEEBCGGGSTTHHHHHHHCHHHHHHHHHHHHHCTTSCCEEEEHH
T ss_pred HHHHCCCCCCHHHHHHCCCCCCCCHHHHHHHHCCCCEEEECCCCCCCHHHCCCHHHHHHHHHHHHHHHCCCCEEEEEEHH
T ss_conf 99703367504456526640166999999998199759888543410211010015799999999985788136775199
Q ss_pred HHHHHHHHHHHHHCCCEEEECHHHHHHCCC-CCCCEEEEECCCCCCCCCCCC--------CCCEEEECCCCCCHHHHHCC
Q ss_conf 999999998774177305720136641898-998807753389643446899--------97201011545701222005
Q 003575 388 KLWFEILNSQIETGTPYMLFKDSCNRKSNQ-QNLGTIKSSNLCTEIVEFSSP--------EETAVCNLASIALPRYVREK 458 (810)
Q Consensus 388 ~l~~~I~~~~~etG~P~i~f~D~~Nr~~~~-~~~g~I~~sNlC~EI~~~~~~--------~e~~~CNL~sinL~~~v~~~ 458 (810)
+||++|++++|+||+|||+|+|+||+++|+ ++.|+|++||||+||+||++| +|+++|||+||||++|+
T Consensus 397 ~L~~~I~~~~~etG~P~i~f~D~~N~~~~~~~~~g~I~~SNlC~Ei~l~~~p~~~~~~~~ge~~~CNL~SiNL~~~~--- 473 (761)
T 2xap_A 397 ELFSLMMQERASTGRIYIQNVDHCNTHSPFDPAIAPVRQSNLCLEIALPTKPLNDVNDENGEIALCTLSAFNLGAIN--- 473 (761)
T ss_dssp HHHHHHHHHHHHHSCEEEEETTHHHHSSSBCTTTSCBCCCCTTSCCCCBCBCCSSTTCTTCBCEECEEEEEETTTCS---
T ss_pred HHHHHHHHHHHHHCCCEEEECHHHHHCCCCCCCCCEEEEECCCCCCCCCCCCCCCCCCCCCCEEECCCCEEEHHHHC---
T ss_conf 99999999999749853872287773597666668077126441234567752000245675133140132299952---
Q ss_pred CCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHCCCCCEEECCHHHHHHHHCCCCC
Q ss_conf 97644554221256788886679889999999999999988741899848899985115970211504999999829999
Q 003575 459 GVPVQSNVSKLVGSRDSKNRLFDFERLAEVTKIITENLNKIIDVNHYPIETTRRSNLRHRPIGIGIQGLADTFILLGLPF 538 (810)
Q Consensus 459 ~~~~~~~~~~~~~~~~~~~~~fd~~~l~~~v~~avr~LD~vId~~~~p~~~~~~~~~~~R~IGiGv~Glad~L~~~gi~y 538 (810)
||++|+++|+++||+||+|||.+.||+|+++++++++|+||||+|||||+|+++|++|
T Consensus 474 ----------------------d~~~l~~~v~~avr~Ld~vid~~~yp~~~~~~~~~~~R~IGlGv~Glad~L~~~gi~Y 531 (761)
T 2xap_A 474 ----------------------NLDELEELAILAVRALDALLDYQDYPIPAAKRGAMGRRTLGIGVINFAYYLAKHGKRY 531 (761)
T ss_dssp ----------------------SGGGHHHHHHHHHHHHHHHHHHSCCSSHHHHHHHHHHCCEEEEEECHHHHHHHTTCCS
T ss_pred ----------------------CHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHCCCCCCCCCCHHHHHHHCCCCC
T ss_conf ----------------------8999999999999999998982367729999999854763667510999999869987
Q ss_pred CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCC------CCCCCCHHHHHHHHHHCCC
Q ss_conf 9998899999999999999999999999970999999799666676432012479------9980138999999984286
Q 003575 539 ESPEAQQLNKDIFETIYYHALKASAELAVKDGPYETYFGSPMSKGILQVDMWNIT------PSDRWDWSSLREMISKNGV 612 (810)
Q Consensus 539 ~S~ea~~l~~~i~e~i~~~a~~aS~eLAkE~G~~~~f~~S~~~~G~l~~d~~~~~------~~~~~~W~~Lr~~i~~~G~ 612 (810)
+|+||++|++++||.|+|+|++||++||+|+|+||.|++|+|++|++++|.|... ++..++|++||++|++||+
T Consensus 532 ~S~ea~~~~~~i~e~i~~~a~~aS~eLA~E~G~~~~f~~s~~~~G~~~~d~~~~~~~~~~~~~~~~dW~~Lr~~i~~~G~ 611 (761)
T 2xap_A 532 SDGSANNLTHKTFEAIQYYLLKASNELAKEQGACPWFNETTYAKGILPIDTYKKDLDTIANEPLHYDWEALRESIKTHGL 611 (761)
T ss_dssp TTSTTHHHHHHHHHHHHHHHHHHHHHHHHHHCCCTTGGGBSGGGTCCHHHHSCGGGGGTCCCCCCSCHHHHHHHHHHHCC
T ss_pred CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCHHHCCCCCHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHCC
T ss_conf 99999999999999999999999999999868798877784533774332455555530373025529999999998486
Q ss_pred CCCCEECCCCCCCHHHHCCCCCCCCCCCCCEEEEECCCCCEEEECHHHHHHHHHCCCCHHHHHHHHHHCCCCCCCCCCCC
Q ss_conf 55430014999531100489752223554525688255752773878899999839991998889871498511356896
Q 003575 613 RNSLLVAPMPTASTSQILGNNECFEPYTSNIYTRRVLSGEFIVVNKHLLKDLTELGLWSHALKTKIIYENGSVSKISEIP 692 (810)
Q Consensus 613 RNs~l~AiaPT~s~S~i~g~t~gieP~~s~~y~r~~~~G~~~~vn~~l~~~L~~~g~~~~~~~~~i~~~~gsi~~~~~~p 692 (810)
|||+++|||||||||+|+|+|+||||+|+++|.|+...|.+..++|.+
T Consensus 612 RNs~l~aiAPTgTiS~i~g~s~gIeP~~~~~~~r~~~~G~~~~~~p~~-------------------------------- 659 (761)
T 2xap_A 612 RNSTLSALMPSETSSQISNATNGIEPPRGYVSIKASKDGILRQVVPDY-------------------------------- 659 (761)
T ss_dssp SCSCCBCBCCCSHHHHHTTCCCTTCCCSSSEEEECCTTSCEEEECTTH--------------------------------
T ss_pred CCCEEEECCCCCCEEEECCCCCEECCCCCCEEEEECCCCCEEEECCCH--------------------------------
T ss_conf 211145348886544203778722505464246751368422207788--------------------------------
Q ss_pred HHHHHHCCCCCCCC-HHHHHHHHHHHCCCCCCCCCEEEEECC-------CCHHHHHHHHHHHHHCCCCEEEEEECCCCCC
Q ss_conf 67886100001489-499999999857624346410576179-------9967899999999984996589984375322
Q 003575 693 EELKAIYKTVWEIK-QKTLVDMAADRGCYIDQSQSLNIHMEQ-------PDHGKLTSLHFYAWSKGMKTGMYYLRTRAAA 764 (810)
Q Consensus 693 ~~~k~~f~tA~ei~-~~~~i~~~a~~Q~~vDqsiS~tl~~~~-------~~~~~i~~~~~~Awk~GlKt~~yY~r~~~~~ 764 (810)
++++++|+|||||+ |+++|+|+|++|||||||||+|||+++ .+.+++.++|++||++|||| +||+|+++++
T Consensus 660 ~~l~~~y~ta~ei~~~~~~i~m~A~~Q~~iDqsiS~tl~~~~~~~~~~~~t~~dl~~~y~~Awk~GlKT-~Yy~rsr~~~ 738 (761)
T 2xap_A 660 EHLHDAYELLWEMPGNDGYLQLVGIMQKFIDQSISANTNYDPSRFPSGKVPMQQLLKDLLTAYKFGVKT-LYXQNTRDGA 738 (761)
T ss_dssp HHHTTTCCCGGGCSCSHHHHHHHHHHHTTCSSCBCCCEEECGGGSGGGCEEHHHHHHHHHHHHHTTCCE-ECCEEECCC-
T ss_pred HHHHHHHHHHHCCCCHHHHHHHHHHHCCCCCCCCCCEEEECCCCCCCCCCCHHHHHHHHHHHHHCCCCE-ECCCCCCCHH
T ss_conf 998998768971667899999999976766234264587777433567889999999999999819888-7778772002
Q ss_pred CCCC
Q ss_conf 1100
Q 003575 765 DAIK 768 (810)
Q Consensus 765 ~~~~ 768 (810)
...+
T Consensus 739 ~~~~ 742 (761)
T 2xap_A 739 EDAQ 742 (761)
T ss_dssp ----
T ss_pred HHCC
T ss_conf 2124
No 5
>1peq_A Ribonucleoside-diphosphate reductase 2 alpha chain; stranded alpha/beta barrel, protein-specificity-effector complex, DTTP; HET: TTP; 2.80A {Salmonella typhimurium} SCOP: a.98.1.1 c.7.1.2 PDB: 1peo_A* 1pem_A* 1peu_A* 2bq1_E*
Probab=1.00 E-value=1 Score=1326.83 Aligned_cols=634 Identities=26% Similarity=0.445 Sum_probs=571.4
Q ss_pred HCCCCCCHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHHHHHHCCCCCC-------CCCHHHHHH--HHH-CHHHHHHH
Q ss_conf 4207997399999999998--88895120259999999994430176445-------766479999--996-09999754
Q 003575 67 MTVNHPDYALLAGRVAVSN--LHKITKNSFSETIKDMYNYYNKRSGKKAS-------LVADDVYEI--IMK-NAACLDGA 134 (810)
Q Consensus 67 ~~~~~p~y~~lA~Rl~~~~--l~k~~~~~~~~~~~~l~~~~~~~~~~~~~-------l~~~~~~~~--~~~-~~~~l~~~ 134 (810)
....+|||..||+||.+.+ +++++.++|+.+...+++|++++++.+.. |+++++|+. +.+ +.++|++.
T Consensus 9 ~~~~~~~y~~l~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~y~~~~~~~y~~~~l~~~ 88 (714)
T 1peq_A 9 VMQETMDYHALNAMLNLYDKAGHIQFDKDQQAIDAFFATHVRPHSVTFASQHERLGTLVREGYYDDAVLARYDRAFVLRL 88 (714)
T ss_dssp CSCCCCCHHHHHHGGGCCCTTSCCCTHHHHHHHHHHHHHTHHHHBCCCSCHHHHHHHHHHTTSBCHHHHTTSCHHHHHHH
T ss_pred HCCCCCCHHHHHHHHCCCCCCCCCCCCCHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHCCCCCHHHHHHCCHHHHHHH
T ss_conf 55689889999987833256786435101999999999865240467888899999887167546898975589999999
Q ss_pred HCC--CCCCCC-CHHHHHHHHHHHCCCC-CCC-CCCCHHHHHHHHHHHHCCCCHHHHHHHHHHHHCCCEECCCCCCCCCC
Q ss_conf 112--356788-8044999997413645-993-25898999999982421689178999999974382203776202458
Q 003575 135 IIY--DRDFDF-DYFGFKTLERSYLLKM-DSR-VVERPQHMLMRVSVGIHKDDTDSALKTYHLMSQHWFTHATPTLFNAG 209 (810)
Q Consensus 135 i~~--~rd~~f-~y~g~~~l~~~Yllk~-~g~-~~E~pq~~~~rvA~~l~~~~~~~~~~~y~~ls~~~~~~atP~l~naG 209 (810)
+++ ++||.| +|+|+++|+++|++|. +|+ ++|+||+++||||++++..+.+++++||++|++++|+||||||+|+|
T Consensus 89 ~~~~~~~~~~f~~y~g~~~l~~~Y~lk~~~g~~~~E~~~~~~~rvA~~la~~~~~~a~~~y~~ls~~~f~patPtl~NaG 168 (714)
T 1peq_A 89 FEHAHASGFRFQTFLGAWKFYTSYTLKTFDGKRYLEHFEDRVTMVALTLAQGDETLATQLTDEMLSGRFQPATPTFLNCG 168 (714)
T ss_dssp HHHHHHSCCCCSSHHHHHHHHHHTSCBCTTSSSBCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTSEEECHHHHHHTT
T ss_pred HHHHHHCCCCCCCHHHHHHHHHHCCCCCCCCCEEECCHHHHHHHHHHHHCCCCHHHHHHHHHHHHHCCCCCCCHHHHCCC
T ss_conf 85666327877765899999987065169999884789999999999974578899999999998288666873554077
Q ss_pred CCC-CCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHCCCCCEEEEEECCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHH
Q ss_conf 998-8876533333457986879999999999997539752000023379983357888777841189999999999740
Q 003575 210 TPQ-PQLSSCFLLCMKDDSIEGIYDTLKKCAIISKSAGGIGLSIHNIRASGSYIHGTNGSSNGIVPMLQVFNDTARYVDQ 288 (810)
Q Consensus 210 t~~-~~lsSCfl~~~~~Ds~~~I~~~~~~~a~i~k~ggGiG~~~s~iR~~Gs~I~g~~g~ssG~vpflk~~~~~~~~v~q 288 (810)
++. +||+||||+++ +||++||+++++++++++|.|||||+|||+|||+|++|+|++|.|||||||||+||+++.+|+|
T Consensus 169 t~~~~qlssCFl~~v-~Dsle~I~~~~~~~a~l~k~gGGvG~~~s~iR~~Gs~I~g~~g~ssG~vpfmk~~d~~~~~v~Q 247 (714)
T 1peq_A 169 KQQRGELVSCFLLRI-EDNMESIGRAVNSALQLSKRGGGVAFLLSNLREAGAPIKRIENQSSGVIPVMKMLEDAFSYANQ 247 (714)
T ss_dssp BSSCCCSCCCEEECC-CSSHHHHHHHHHHHHHHHTTTCEEEEECTTSCCTTCCBTTBSSCCCCSHHHHHHHHHHHHHC--
T ss_pred CCCCCCCCCEECCCC-CCCHHHHHHHHHHHHHHHHCCCCCEEEECCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHC
T ss_conf 787777552236778-9877789999999999985389706740234678773567788788746899999999999861
Q ss_pred CCCCCCCCEEEEECCCCCCHHHHHHHHHHCCCCCCCCCCCCEECCCCHHHHHHHHCCCCEEEECCCCCCCCHHHHHHH--
Q ss_conf 897345732885047866689999952305931000013530022498889998659965876679889721112026--
Q 003575 289 GGGKRKGAFAIYLEPWHADIFEFLDLRKNQGKEECRARDLFYALWVPDLFMERVRDDGKWSLFCPSDASGLADSWGIE-- 366 (810)
Q Consensus 289 gG~~Rrga~~~~l~~wH~DI~~Fl~~K~~~g~~~~r~~~~~~sv~i~D~Fm~~v~~~~~w~Lf~P~~~~~L~~~~g~e-- 366 (810)
|| +||||.|+||++|||||++||++|+++|++++|++++|+||||||+||++|++|++|+||+|+++ .++||.+
T Consensus 248 gG-~RrGA~~vyL~~~HpDI~eFl~~K~~~gde~~r~~~l~~~v~ipD~Fm~~v~~d~~w~Lf~P~~~---~~~~G~~~~ 323 (714)
T 1peq_A 248 LG-ARQGAGAVYLHAHHPDILRFLDTKRENADEKIRIKTLSLGVVIPDITFRLAKENAQMALFSPYDI---QRRYGKPFG 323 (714)
T ss_dssp -----CCEEEEEEETTSTTHHHHHGGGC--------CCSCEEEEECCSHHHHHHHTTCEEEEECHHHH---HHHHSSCGG
T ss_pred CC-CCCCCEEEEECCCCCHHHHHHHHCCCCCCHHHHHHHHHHHHCCCHHHHHHHHCCCCEEEECCCCC---HHHCCCCCC
T ss_conf 68-66784148836887169999997013651455566511442549999999986997063577532---443286400
Q ss_pred ---HHHHHHHHHHCCC-EEEEEEHHHHHHHHHHHHHHHCCCEEEECHHHHHHCCCCCCCEEEEECCCCCCCCCCCCCC--
Q ss_conf ---9999999988094-0389729999999999877417730572013664189899880775338964344689997--
Q 003575 367 ---FEHLYSQYEEEGR-AKMVISARKLWFEILNSQIETGTPYMLFKDSCNRKSNQQNLGTIKSSNLCTEIVEFSSPEE-- 440 (810)
Q Consensus 367 ---F~~~Y~~~e~~~~-~~~~i~Ar~l~~~I~~~~~etG~P~i~f~D~~Nr~~~~~~~g~I~~sNlC~EI~~~~~~~e-- 440 (810)
|++.|+++++++. .+++|+||+||++|++++|+||+|||+|+|++|++||++ |+|++||||+||+|+++|++
T Consensus 324 ~~~~~~~Y~~~~~~~~i~~~~v~Ar~L~~~I~~~~~etG~P~i~f~D~~N~~~~~~--g~I~~SNlC~EI~~~~~p~~~~ 401 (714)
T 1peq_A 324 DIAISERYDELIADPHVRKTYINARDFFQTLAEIQFESGYPYIMFEDTVNRANPIA--GRINMSNLCSEILQVNSASRYD 401 (714)
T ss_dssp GSCHHHHHHHHHHCTTSCEEEEEHHHHHHHHHHHHHHHSCCEEECHHHHHHHCCSS--SCCCCCCTTSCCCCCCCCCEEC
T ss_pred CCCHHHHHHHHHHCCCEEEEEEEHHHHHHHHHHHHHHHCCCEEEEHHHHHHCCCCC--CEEEECCCCCCEECCCCCCCCC
T ss_conf 13368999999757871467860999999999999996897598736666349988--7365057652000357754345
Q ss_pred ----------CEEEECCCCCCHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHCCCC-CHHH
Q ss_conf ----------20101154570122200597644554221256788886679889999999999999988741899-8488
Q 003575 441 ----------TAVCNLASIALPRYVREKGVPVQSNVSKLVGSRDSKNRLFDFERLAEVTKIITENLNKIIDVNHY-PIET 509 (810)
Q Consensus 441 ----------~~~CNL~sinL~~~v~~~~~~~~~~~~~~~~~~~~~~~~fd~~~l~~~v~~avr~LD~vId~~~~-p~~~ 509 (810)
.++|||+||||++|+.. ++|+++|+++||+||+|||.+.| |+|+
T Consensus 402 ~~~~~~~~G~~~~CNL~SiNL~~~v~~-------------------------~~l~~~v~~avr~Ld~Vid~~~~~~~p~ 456 (714)
T 1peq_A 402 DNLDYTHIGHDISCNLGSLNIAHVMDS-------------------------PDIGRTVETAIRGLTAVSDMSHIRSVPS 456 (714)
T ss_dssp TTSCEEECCCCEECEEEEEEHHHHHTC-------------------------SCHHHHHHHHHHHHHHHHHTCCCTTCHH
T ss_pred CCCCCCCCCCCCCCCCHHHHHHHHCCH-------------------------HHHHHHHHHHHHHHHHHHHHHCCCCCHH
T ss_conf 554324568867633263338975587-------------------------8899999999999999876423688799
Q ss_pred HHHHHHCCCCCEEECCHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCC-CCCCCCCCCCCCCCCCCC
Q ss_conf 9998511597021150499999982999999988999999999999999999999999709-999997996666764320
Q 003575 510 TRRSNLRHRPIGIGIQGLADTFILLGLPFESPEAQQLNKDIFETIYYHALKASAELAVKDG-PYETYFGSPMSKGILQVD 588 (810)
Q Consensus 510 ~~~~~~~~R~IGiGv~Glad~L~~~gi~y~S~ea~~l~~~i~e~i~~~a~~aS~eLAkE~G-~~~~f~~S~~~~G~l~~d 588 (810)
++++++++|+||||+|||||+|+++|++|+|+||++|+++|||.|+|+|++||++||+|+| +||.|++|+|++|++ |+
T Consensus 457 ~~~~~~~~R~IGlGv~Glad~L~~~gi~Y~S~ea~~~~~~i~e~i~~~A~~aS~eLA~E~G~~f~~f~~s~~~~G~~-f~ 535 (714)
T 1peq_A 457 IAAGNAASHAIGLGQMNLHGYLAREGIAYGSPEALDFTNLYFYTITWHAVHTSMRLARERGKTFAGFAQSRYASGDY-FT 535 (714)
T ss_dssp HHHHHHHHCCEEEEEECHHHHHHHTTCCTTSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCCCTTGGGSHHHHSHH-HH
T ss_pred HHHHHHHCCCEEEEHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCHHHCCCH-HH
T ss_conf 99998824870771878999999769987999999999999999999999999999998499875656583423544-55
Q ss_pred CC-------------------CCCCCCCCCHHHHHHHHHHCCCCCCCEECCCCCCCHHHHCCCCCCCCCCCCCEEEEECC
Q ss_conf 12-------------------47999801389999999842865543001499953110048975222355452568825
Q 003575 589 MW-------------------NITPSDRWDWSSLREMISKNGVRNSLLVAPMPTASTSQILGNNECFEPYTSNIYTRRVL 649 (810)
Q Consensus 589 ~~-------------------~~~~~~~~~W~~Lr~~i~~~G~RNs~l~AiaPT~s~S~i~g~t~gieP~~s~~y~r~~~ 649 (810)
.| ...++..+||++|+++|++||+|||+++|||||||||+|+|+|+||||+|+++|+|++.
T Consensus 536 ~~~~~~~~p~~~~v~~l~~~~~~~~~~~~dW~~Lr~~i~~~G~RNs~l~aiAPTgTiS~i~g~S~gIeP~~s~~~~r~~~ 615 (714)
T 1peq_A 536 QYLQDDWQPKTAKVRALFARSGITLPTREMWLKLRDDVMRYGIYNQNLQAVPPTGSISYINHATSSIHPIVAKIEIRKEG 615 (714)
T ss_dssp HHHSSCCSCSSHHHHHHHHHHTCCCCCHHHHHHHHHHHHHHCCSCSCCBCBCCCCTHHHHHTCCSSSSCCSCSEEEECCS
T ss_pred HCCCCCCCCCCHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHCCCHHHEEEECCCCCCHHHCCCCCCCCCCCCCEEEEECC
T ss_conf 31442337430788887664277775254199999999984870301356358875054258887416453422577626
Q ss_pred C-CCEEEECHHHHHHHHHCCCCHHHHHHHHHHCCCCCCCCCCCCHHHHHHCCCCCCCCHHHHHHHHHHHCCCCCCCCCEE
Q ss_conf 5-752773878899999839991998889871498511356896678861000014894999999998576243464105
Q 003575 650 S-GEFIVVNKHLLKDLTELGLWSHALKTKIIYENGSVSKISEIPEELKAIYKTVWEIKQKTLVDMAADRGCYIDQSQSLN 728 (810)
Q Consensus 650 ~-G~~~~vn~~l~~~L~~~g~~~~~~~~~i~~~~gsi~~~~~~p~~~k~~f~tA~ei~~~~~i~~~a~~Q~~vDqsiS~t 728 (810)
. |++.+++++ +|++++++|+|||||+|+++|+|+|++|||||||||+|
T Consensus 616 ~~g~~~~~~p~-------------------------------l~~~~~~~y~tA~ei~~~~~i~m~A~~Q~~iDqsiS~t 664 (714)
T 1peq_A 616 KTGRVYYPAPF-------------------------------MTNENLDMYQDAYDIGPEKIIDTYAEATRHVDQGLSLT 664 (714)
T ss_dssp TTSCEEEECTT-------------------------------CCTTSGGGCCCHHHHCHHHHHHHHHHHHTTCSSCBCCC
T ss_pred CCCCEEEECCC-------------------------------CCHHHHHHHCCHHHCCHHHHHHHHHHHCCCCCCCCCCE
T ss_conf 57707875776-------------------------------43335765086864999999999999767562246635
Q ss_pred EEECC-CCHHHHHHHHHHHHHCCCCEEEEEECCCCCCC
Q ss_conf 76179-99678999999999849965899843753221
Q 003575 729 IHMEQ-PDHGKLTSLHFYAWSKGMKTGMYYLRTRAAAD 765 (810)
Q Consensus 729 l~~~~-~~~~~i~~~~~~Awk~GlKt~~yY~r~~~~~~ 765 (810)
||+++ .+.++|.++|++||++|||| +||+|+++.+.
T Consensus 665 l~~~~~~t~~dl~~~y~~Awk~GlKt-iYY~rs~~~~~ 701 (714)
T 1peq_A 665 LFFPDTATTRDINKAQIYAWRKGIKS-LYYIRLRQLAL 701 (714)
T ss_dssp EEECTTCCHHHHHHHHHHHHHHTCCE-ECCEEECCC--
T ss_pred EEECCCCCHHHHHHHHHHHHHHCCCE-EEECCCCCCCC
T ss_conf 88689999999999999999959988-99825643444
No 6
>3o0q_A Ribonucleoside-diphosphate reductase; alpha/beta barrel, adenosylcobalamin dependent, ribonucle reductase; HET: TTP GDP ADN; 1.80A {Thermotoga maritima} PDB: 1xjf_A* 1xjg_A* 1xje_A* 1xjm_A* 1xjn_A* 3o0n_A* 3o0o_A* 1xjj_A* 1xjk_A*
Probab=1.00 E-value=1 Score=1284.84 Aligned_cols=578 Identities=27% Similarity=0.423 Sum_probs=542.8
Q ss_pred HHHHHCCCCCCCCCHHHHHHHHHHHCCC-CCCCCCC-CHHHHHHHHHHHHCCCC---------------HHHHHHHHHHH
Q ss_conf 9754112356788804499999741364-5993258-98999999982421689---------------17899999997
Q 003575 131 LDGAIIYDRDFDFDYFGFKTLERSYLLK-MDSRVVE-RPQHMLMRVSVGIHKDD---------------TDSALKTYHLM 193 (810)
Q Consensus 131 l~~~i~~~rd~~f~y~g~~~l~~~Yllk-~~g~~~E-~pq~~~~rvA~~l~~~~---------------~~~~~~~y~~l 193 (810)
+..+|+|+||+.|+|+|+++|.+||++| .+|+++| +||++|||||++++..+ .+++++||++|
T Consensus 3 ~~~~~~~~~d~~~s~~a~~~l~~rYllk~~~g~~~E~spq~~~~RVA~~la~~e~~~~~~~~~~~~~~~~~~~~~fy~~l 82 (644)
T 3o0q_A 3 LSDLISRWIDVEPSKNAQIILRDRYFMKDLDGNYLETKWEDVARRVARVVATAELLNPSYKKNEKLDRIKEWEDIFFRVL 82 (644)
T ss_dssp HHHHHHHHTTCCCCHHHHHHHHHHTSCBCTTSCBSCCSHHHHHHHHHHHHHGGGGGCTTCCHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHCCCCCCCHHHHHHHHHHHCCCCCCCCCCCCCHHHHHHHHHHHHHHHCCCCCCCCCCCCCHHHHHHHHHHHHHH
T ss_conf 45543304778979999999999508328999975489999999999999864244442000011013799999999999
Q ss_pred HCCCEECCCCCCCCCCC---------C------------------CCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHCC
Q ss_conf 43822037762024589---------9------------------88876533333457986879999999999997539
Q 003575 194 SQHWFTHATPTLFNAGT---------P------------------QPQLSSCFLLCMKDDSIEGIYDTLKKCAIISKSAG 246 (810)
Q Consensus 194 s~~~~~~atP~l~naGt---------~------------------~~~lsSCfl~~~~~Ds~~~I~~~~~~~a~i~k~gg 246 (810)
++++|+||||||+|+|+ + ++|||||||+++ +||++||+++++++++++|+||
T Consensus 83 s~~~f~patPtl~NaGt~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~qlssCFl~~v-~Dsl~~I~~~~~~~a~i~k~GG 161 (644)
T 3o0q_A 83 KARLFIPNSPTLFNAGLGVKHDLLWKPIDQMTLEDYEEIYRSRNHLHMLSACFVVPV-GDSIEEIFEAVKEYALITKVGG 161 (644)
T ss_dssp HTTSEEECHHHHHHTTTTSCHHHHSSCGGGCCHHHHHHHHHHCCTTCCCCCEEECCC-CSSHHHHHHHHHHHHHHHHTTC
T ss_pred HHCCEECCCHHHHCCCCCCCCCCCCCCHHHCCCCCHHHHCCCCCCCCCCCCEEECCC-CCCHHHHHHHHHHHHHHHHHCC
T ss_conf 809873488676458887643434577021022100000124446777613594388-9888999999999999986089
Q ss_pred CCCEEEEEECCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHCCCCCCCCEEEEECCCCCCHHHHHHHHHH-CCCCCCCC
Q ss_conf 75200002337998335788877784118999999999974089734573288504786668999995230-59310000
Q 003575 247 GIGLSIHNIRASGSYIHGTNGSSNGIVPMLQVFNDTARYVDQGGGKRKGAFAIYLEPWHADIFEFLDLRKN-QGKEECRA 325 (810)
Q Consensus 247 GiG~~~s~iR~~Gs~I~g~~g~ssG~vpflk~~~~~~~~v~qgG~~Rrga~~~~l~~wH~DI~~Fl~~K~~-~g~~~~r~ 325 (810)
|||+|||+|||+|++|+|++|+|||||||||+||+++.+|+||| +||||.|+||++|||||++||++|++ .|+ .+.
T Consensus 162 GiG~~~s~iR~~Gs~I~g~~g~ssG~vpfmk~~d~~~~~v~QgG-~RrGA~~~yL~~~HpDI~eFl~~K~~n~g~--~~~ 238 (644)
T 3o0q_A 162 GVGSNFSELRPKGSFVAGTHGKASGPVSFMHVFNSAISVVKQGS-RRRGALMGILNINHPDIEEFIDAKKENTGE--AVL 238 (644)
T ss_dssp EEEEECTTSCCTTCEETTTTEECCCHHHHHHHHHHHHTTCEETT-TEECCEEEEEETTSTTHHHHHTCC---------CC
T ss_pred CCEEECCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHCCC-CCCCCEEEEECCCCCCHHHHHHHHCCCCCC--CCE
T ss_conf 73120034489988024568846885109999999999997079-655505799648984799999983436675--434
Q ss_pred CCCCEECCCC---HHHHHHHHCCCCEEEECCCCCCCCHHHHHHHHHHHHHHHHHCCCEEEEEEHHHHHHHHHHHHHHHCC
Q ss_conf 1353002249---8889998659965876679889721112026999999998809403897299999999998774177
Q 003575 326 RDLFYALWVP---DLFMERVRDDGKWSLFCPSDASGLADSWGIEFEHLYSQYEEEGRAKMVISARKLWFEILNSQIETGT 402 (810)
Q Consensus 326 ~~~~~sv~i~---D~Fm~~v~~~~~w~Lf~P~~~~~L~~~~g~eF~~~Y~~~e~~~~~~~~i~Ar~l~~~I~~~~~etG~ 402 (810)
+++|++|+|| |+||+||++|++|+||+|. |..+++|+||+||++|++++|+||+
T Consensus 239 ~~~n~sv~i~~~pD~Fm~~v~~d~~w~L~~P~-----------------------g~~~~~v~Ar~L~~~I~~~~~etG~ 295 (644)
T 3o0q_A 239 NFFNLSVGFPMDKKEILKLYEEDGELELSHPR-----------------------STIRKKVKIRELFRKIATNAWKSGD 295 (644)
T ss_dssp TTEEEEEECCSCHHHHHHHHHTTCEEEECCTT-----------------------CCCCEEEEHHHHHHHHHHHHHHHSC
T ss_pred EECCEEEEECCCHHHHHHHHHCCCCEEEECCC-----------------------CCEEEEECHHHHHHHHHHHHHHHCC
T ss_conf 63213577278889999999749986968899-----------------------9653226199999999999999789
Q ss_pred CEEEECHHHHHHCCCCCCCEEEEECCCCCCCCCCCCCCCEEEECCCCCCHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCH
Q ss_conf 30572013664189899880775338964344689997201011545701222005976445542212567888866798
Q 003575 403 PYMLFKDSCNRKSNQQNLGTIKSSNLCTEIVEFSSPEETAVCNLASIALPRYVREKGVPVQSNVSKLVGSRDSKNRLFDF 482 (810)
Q Consensus 403 P~i~f~D~~Nr~~~~~~~g~I~~sNlC~EI~~~~~~~e~~~CNL~sinL~~~v~~~~~~~~~~~~~~~~~~~~~~~~fd~ 482 (810)
|||+|+|+||++||+++.|+|++||||+||++++ .++|||+||||++|+.+ +.|||
T Consensus 296 Pgi~f~D~~N~~~~~~~~g~I~~SNlC~Ei~l~~----~~~CNLgSiNL~~~v~~--------------------~~fD~ 351 (644)
T 3o0q_A 296 PGLAFLGEMNKYYPLYPHRKINSTNPCGEIGLSD----YEACNLGSIDVAKFYNN--------------------GFVDL 351 (644)
T ss_dssp CEEECHHHHHHTCTTTTTSCEEEECTTSCCEEET----TCEEEEEEEEGGGGEET--------------------TEECH
T ss_pred CEEEEHHHHHHCCCCCCCCCEEECCCCCCCCCCC----CCCEEHHHHHHHHHHCC--------------------CCCCH
T ss_conf 8499826677569875677266336766312589----98567099889998545--------------------88799
Q ss_pred HHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHCCCCCEEECCHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf 89999999999999988741899848899985115970211504999999829999999889999999999999999999
Q 003575 483 ERLAEVTKIITENLNKIIDVNHYPIETTRRSNLRHRPIGIGIQGLADTFILLGLPFESPEAQQLNKDIFETIYYHALKAS 562 (810)
Q Consensus 483 ~~l~~~v~~avr~LD~vId~~~~p~~~~~~~~~~~R~IGiGv~Glad~L~~~gi~y~S~ea~~l~~~i~e~i~~~a~~aS 562 (810)
+.|+++|+++||+||+|||.+.||+|+++++++++|+||||+|||||+|+++|++|+|+||++++++|||.|+|+|++||
T Consensus 352 ~~l~~~v~~avr~LD~VId~~~~P~~~~~~~~~~~R~IGLGv~Glad~L~~~gi~Y~S~ea~~~~~~i~e~i~~~A~~aS 431 (644)
T 3o0q_A 352 EALQELVQIAVRFLDNVIDVNVFPIDKITKAVKESRRLGLGIMGFADLLYKLEIPYNSQEARDFAANLMAFIALHAHRTS 431 (644)
T ss_dssp HHHHHHHHHHHHHHHHHHHHCCCSSHHHHHHHHHHCCEEEEEECHHHHHHHHTCCSSSHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHCCCCCCCHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHHHHH
T ss_conf 99999999999999999961447679999998613765506377999999769887999999999999999999999999
Q ss_pred HHHHHHCCCCCCCCCCCCC--CCCCCCCCCCCCCCCCCCHHHHHHHHH--HCCCCCCCEECCCCCCCHHHHCCCCCCCCC
Q ss_conf 9999970999999799666--676432012479998013899999998--428655430014999531100489752223
Q 003575 563 AELAVKDGPYETYFGSPMS--KGILQVDMWNITPSDRWDWSSLREMIS--KNGVRNSLLVAPMPTASTSQILGNNECFEP 638 (810)
Q Consensus 563 ~eLAkE~G~~~~f~~S~~~--~G~l~~d~~~~~~~~~~~W~~Lr~~i~--~~G~RNs~l~AiaPT~s~S~i~g~t~gieP 638 (810)
++||+|+|+||.|++|+|+ +|+++++.+. ..+|++|+++|+ +||+|||+++|||||||||+|+|+|+||||
T Consensus 432 ~eLA~e~G~f~~f~~s~~~~~~g~~~~~~~~-----~~~W~~Lr~~i~~~~~G~RNs~l~aiAPTgSiS~i~g~s~gIEP 506 (644)
T 3o0q_A 432 YELGKEKGNFPLLEISRYRTEDNFVPFAMGM-----SNYDDEIREVMKMTKEFRRNVALLTIAPTGSISNIADTSSGLEP 506 (644)
T ss_dssp HHHHHHHCCCTTGGGSHHHHSSSCCSSCCCS-----CTTHHHHHHHHHHTTTCCSCSCCBCBCCCTTHHHHTTSCCTTCC
T ss_pred HHHHHHHCCCCCCCCCCHHCCCCCCCCCCCC-----CCCHHHHHHHHHHCCCCCEEHHEECCCCCCCHHHHCCCCCCCCC
T ss_conf 9999986899775668001148841136443-----11389999998751147300000214888660221388776460
Q ss_pred CCCCEEEEECC--CCC---EEEECHHHHHHHHHCCCCHHHHHHHHHHCCCCCCCCCCCCHHHHHHCCCCCCCCHHHHHHH
Q ss_conf 55452568825--575---2773878899999839991998889871498511356896678861000014894999999
Q 003575 639 YTSNIYTRRVL--SGE---FIVVNKHLLKDLTELGLWSHALKTKIIYENGSVSKISEIPEELKAIYKTVWEIKQKTLVDM 713 (810)
Q Consensus 639 ~~s~~y~r~~~--~G~---~~~vn~~l~~~L~~~g~~~~~~~~~i~~~~gsi~~~~~~p~~~k~~f~tA~ei~~~~~i~~ 713 (810)
+|+++|.|+++ +|+ |.++|++|+++|++. |++++++.|. .+|+++++|.+|++++++|+|||||+|++||+|
T Consensus 507 ~~s~~y~R~~~~~~G~~~~~~~vn~~l~~~l~~~--~~~~~~~~i~-~~Gsv~~~~~lp~~~~~~f~tA~ei~~~~~I~m 583 (644)
T 3o0q_A 507 NFLLAYTRFVTKEDGTKEPLLYVNQVLREKLNPE--ILKRIEKELI-EKGSLKDIPDVPEKIKKVFVVALDIDPMDHLLM 583 (644)
T ss_dssp CSCSEEEEC---------CEEEECHHHHHHSCHH--HHHHHHHHHH-HHSSSTTCTTSCHHHHHHSCCGGGSCHHHHHHH
T ss_pred CCCCEEEEEEECCCCCCCCEEEECHHHHHHHHHH--CCHHHHHHHH-HCCCCCCCCCCCHHHHHHCCCHHHCCHHHHHHH
T ss_conf 5232588972036787221266678999999986--4499999998-569834666689778867051975999999999
Q ss_pred HHHHCCCCCCCCCEEEEECC-CCHHHHHHHHHHHHHCCCCEEEEEECCCCCCCCC
Q ss_conf 99857624346410576179-9967899999999984996589984375322110
Q 003575 714 AADRGCYIDQSQSLNIHMEQ-PDHGKLTSLHFYAWSKGMKTGMYYLRTRAAADAI 767 (810)
Q Consensus 714 ~a~~Q~~vDqsiS~tl~~~~-~~~~~i~~~~~~Awk~GlKt~~yY~r~~~~~~~~ 767 (810)
||++|||||||||+|||+++ .+.++|.++|++||++||||++||....+..++.
T Consensus 584 ~A~~Q~~iDqs~S~tln~p~~~t~~d~~~~y~~Awk~GlK~~t~YR~gs~~~qvl 638 (644)
T 3o0q_A 584 QDAFQRYVDNNISKTINMPQSATVDDVLNVYLEALRTNVRGITVYRDGSLQTQVL 638 (644)
T ss_dssp HHHHHTTCSSCBCCEEEECTTCCHHHHHHHHHHHHHSSCSEEEEEETTCC-----
T ss_pred HHHHCCCCCCCCCCEEECCCCCCHHHHHHHHHHHHHHCCCEEEEECCCCCCCCCC
T ss_conf 9997762403065526568999999999999999996898899988998643534
No 7
>1l1l_A Ribonucleoside triphosphate reductase; 10-stranded alpha-beta barrel, central finger loop, oxidoreductase; 1.75A {Lactobacillus leichmannii} SCOP: c.7.1.4
Probab=1.00 E-value=1 Score=919.34 Aligned_cols=510 Identities=19% Similarity=0.232 Sum_probs=429.6
Q ss_pred CHHHHHHHHCCCCCCCCCHHHHHHHHHHHCCCC-CCCCCCCHHHHHHHHHHHHCCCC---------------HHHHHHHH
Q ss_conf 099997541123567888044999997413645-99325898999999982421689---------------17899999
Q 003575 127 NAACLDGAIIYDRDFDFDYFGFKTLERSYLLKM-DSRVVERPQHMLMRVSVGIHKDD---------------TDSALKTY 190 (810)
Q Consensus 127 ~~~~l~~~i~~~rd~~f~y~g~~~l~~~Yllk~-~g~~~E~pq~~~~rvA~~l~~~~---------------~~~~~~~y 190 (810)
.+++++..|.+.++. +|..+++++|++|. +|+..|+||+++||||++++... .+++++||
T Consensus 11 f~~~~~~~~~p~~~~----~g~~~~~r~Y~~~~~~g~~~E~~~e~~~RVa~g~~~~~~~~~~~~~~~~~~~~~~~a~~~y 86 (739)
T 1l1l_A 11 FIDRVKASVKPHWGK----LGWVTYKRTYARWLPEKGRSENWDETVKRVVEGNINLDPRLQDSPSLELKQSLTEEAERLY 86 (739)
T ss_dssp HHHHHHHHCCCCCCT----THHHHHHTTTCCEETTTTEECCHHHHHHHHHHHHHTTCGGGGSCCCHHHHHHHHHHHHHHH
T ss_pred HHHHHCCCCCCCCCH----HHHHHHHHHCCCCCCCCCEECCHHHHHHHHHHHHHHHHHHCCCCCCCCCCHHHHHHHHHHH
T ss_conf 999840767999676----5799998505047799996358999999999999864022035532121024699999999
Q ss_pred HHHHCCCEECCCCCCCCCCCCC----C-CCCCCCCCCCC-----------------------------------------
Q ss_conf 9974382203776202458998----8-87653333345-----------------------------------------
Q 003575 191 HLMSQHWFTHATPTLFNAGTPQ----P-QLSSCFLLCMK----------------------------------------- 224 (810)
Q Consensus 191 ~~ls~~~~~~atP~l~naGt~~----~-~lsSCfl~~~~----------------------------------------- 224 (810)
++|++++|+||||||+|+||+. + ||+|||++++.
T Consensus 87 ~~m~~~~~~pa~ptL~naGt~~~~~~~~~l~sCf~~~v~~~~~~Ds~~~~~~l~~~~~~~~~~f~~i~~~~~~GgGvG~~ 166 (739)
T 1l1l_A 87 KLIYGLGATPSGRNLWISGTDYQRRTGDSLNNCWFVAIRPQKYGDSKIVPSYLGKQEKAVSMPFSFLFDELMKGGGVGFS 166 (739)
T ss_dssp HHHHTTSEEECHHHHHHTTSHHHHTSTTTTCCEEEEECSCEECCSCSCCCTTSCSSCEETTHHHHHHHHHHHTTCEEEEE
T ss_pred HHHHHCCEECCCHHHHHCCCCCCCCCCCCEEEEEEEECCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHCCCCCCEE
T ss_conf 99983973246827762688765567872110387202654455421122222211123223489999999608877622
Q ss_pred ------------------------------------------------------CCCHHHHHHHHHHHHHHHHH------
Q ss_conf ------------------------------------------------------79868799999999999975------
Q 003575 225 ------------------------------------------------------DDSIEGIYDTLKKCAIISKS------ 244 (810)
Q Consensus 225 ------------------------------------------------------~Ds~~~I~~~~~~~a~i~k~------ 244 (810)
+||++||++++. ++++++
T Consensus 167 ~~~~~i~~lp~v~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~v~DS~eGi~~~~~--ali~~~~~~~~~ 244 (739)
T 1l1l_A 167 VARSNISQIPRVDFAIDLQLVVDETSESYDASVKVGAVGKNELVQDADSIYYRLPDTREGWVLANA--LLIDLHFAQTNP 244 (739)
T ss_dssp CCHHHHTTSCCCCCCCEEEEECCTTSTTHHHHHHTTCBCTTTCCCCTTCEEEECCSSHHHHHHHHH--HHHHTTSGGGCT
T ss_pred CCCCCCCCCCCCCCCCCEEEEECCCCCCCCCCCCCCCCCHHHHCCCCCCEEEECCCCHHHHHHHHH--HHHHHHHCCCCC
T ss_conf 152200017864444320354135542211011135556233024666304545886557999999--999974124555
Q ss_pred --CCCCCEEEEEECCCCCCCCCCCCCCCCCCCHHHHHHHH------------------------HHHHHHCCCCCCCCEE
Q ss_conf --39752000023379983357888777841189999999------------------------9997408973457328
Q 003575 245 --AGGIGLSIHNIRASGSYIHGTNGSSNGIVPMLQVFNDT------------------------ARYVDQGGGKRKGAFA 298 (810)
Q Consensus 245 --ggGiG~~~s~iR~~Gs~I~g~~g~ssG~vpflk~~~~~------------------------~~~v~qgG~~Rrga~~ 298 (810)
+||||+|||+|||+|++|+|++|+|||||||||+|+++ +.+|+||| +||||.|
T Consensus 245 ~~~gGiG~~~S~IRp~Gs~Ikg~~G~ssG~vpf~k~~~~~~~i~~~~~g~~l~~~d~~di~~~i~~~V~QGG-~RrGA~m 323 (739)
T 1l1l_A 245 DRKQKLILDLSDIRPYGAEIHGFGGTASGPMPLISMLLDVNEVLNNKAGGRLTAVDAADICNLIGKAVVAGN-VRRSAEL 323 (739)
T ss_dssp TCCCEEEEECTTSCCTTCBCTTSSSBCCCSHHHHHHHHHHHHHHHTTTTSCCCHHHHHHHHHHHHHHHHTTC-----CEE
T ss_pred CCCCCEEEECCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHCCC-CCCCCEE
T ss_conf 678835874243588988257889858881779999999998764300333443002235677778886079-6566337
Q ss_pred EEECCCCCCHHHHHHHHHHCCCCCCCCCCCCEECCCCHHHHHHHHCCCCEEEECCCCCCCCHHHHHHHHHHHHHHHHHCC
Q ss_conf 85047866689999952305931000013530022498889998659965876679889721112026999999998809
Q 003575 299 IYLEPWHADIFEFLDLRKNQGKEECRARDLFYALWVPDLFMERVRDDGKWSLFCPSDASGLADSWGIEFEHLYSQYEEEG 378 (810)
Q Consensus 299 ~~l~~wH~DI~~Fl~~K~~~g~~~~r~~~~~~sv~i~D~Fm~~v~~~~~w~Lf~P~~~~~L~~~~g~eF~~~Y~~~e~~~ 378 (810)
+|| ||||++||++|+++|+.+..-+.+|+||+|||+||+
T Consensus 324 ~~l---~pDi~eFi~~K~~~g~~~~~~~~~n~Sv~v~D~Fm~-------------------------------------- 362 (739)
T 1l1l_A 324 ALG---SNDDQDFISMKQDQEKLMHHRWASNNSVAVDSAFSG-------------------------------------- 362 (739)
T ss_dssp EEE---ETTCHHHHHGGGCHHHHHHTGGGEEEEEEECTTCCC--------------------------------------
T ss_pred EEE---CCCHHHHHHHCCCCCHHHCCCCCCCCEEEECHHHHH--------------------------------------
T ss_conf 997---836899998572201111221125733564789999--------------------------------------
Q ss_pred CEEEEEEHHHHHHHHHHHHHHHCCCEEEECHHHHHH------CCCCCCCEEEEECCCCCCCCCCCCCCCEEEECCCCCCH
Q ss_conf 403897299999999998774177305720136641------89899880775338964344689997201011545701
Q 003575 379 RAKMVISARKLWFEILNSQIETGTPYMLFKDSCNRK------SNQQNLGTIKSSNLCTEIVEFSSPEETAVCNLASIALP 452 (810)
Q Consensus 379 ~~~~~i~Ar~l~~~I~~~~~etG~P~i~f~D~~Nr~------~~~~~~g~I~~sNlC~EI~~~~~~~e~~~CNL~sinL~ 452 (810)
|.+|++++|+||+|||+|+|++|++ +|+++.|+|++||||+||+|++ .++|||+|||
T Consensus 363 -----------~~~I~~~~~etGePgi~f~D~~N~~~~~~~~~~~~~~g~I~~SNpC~EI~l~~----~~~CNL~Sin-- 425 (739)
T 1l1l_A 363 -----------YQPIAAGIRENGEPGIVNLDLSKNYGRIVDGYQAGIDGDVEGTNPCGEISLAN----GEPCNLFEVF-- 425 (739)
T ss_dssp -----------HHHHHHHHHHHSCCEEEEHHHHHHCSSGGGCCCTTTTTTEEEECTTCCSEEET----TCBCCEEEEC--
T ss_pred -----------HHHHHHHHHHCCCCEEEECHHHHCCCCCCCCCCCCCCCCEEECCCCEEEECCC----CCCCCHHHHH--
T ss_conf -----------99999999870898067225443125433457755576178548660241146----7733505443--
Q ss_pred HHHHCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHCCCCCEEECCHHHHHHH
Q ss_conf 22200597644554221256788886679889999999999999988741899848899985115970211504999999
Q 003575 453 RYVREKGVPVQSNVSKLVGSRDSKNRLFDFERLAEVTKIITENLNKIIDVNHYPIETTRRSNLRHRPIGIGIQGLADTFI 532 (810)
Q Consensus 453 ~~v~~~~~~~~~~~~~~~~~~~~~~~~fd~~~l~~~v~~avr~LD~vId~~~~p~~~~~~~~~~~R~IGiGv~Glad~L~ 532 (810)
.|+.. .|||+ |+++++++||+||+| |++.||+|+++++++++|+||||+|||||+|+
T Consensus 426 ~~v~~---------------------~~d~~-l~~~v~~avr~LdnV-d~~~yp~~~~~~~~~~~R~IGlGv~Glad~L~ 482 (739)
T 1l1l_A 426 PLIAE---------------------EQGWD-LQEVFALAARYAKRV-TFSPYDWEISREIIQKNRRIGISMSGIQDWLL 482 (739)
T ss_dssp HHHHH---------------------HTTCC-HHHHHHHHHHHHHHH-TTSCCSCHHHHHHHHHHCCCEEEECSHHHHHH
T ss_pred HHCCC---------------------CCCHH-HHHHHHHHHHHHHHH-HHCCCCCHHHHHHHHHCCCCCCCCCCHHHHHH
T ss_conf 11034---------------------43277-999999999997762-53047709999999857932325665999999
Q ss_pred -HCCCCC----CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCC--CCCCCCCCCCCCCCCCCCCCHHHHHH
Q ss_conf -829999----99988999999999999999999999999709999997996--66676432012479998013899999
Q 003575 533 -LLGLPF----ESPEAQQLNKDIFETIYYHALKASAELAVKDGPYETYFGSP--MSKGILQVDMWNITPSDRWDWSSLRE 605 (810)
Q Consensus 533 -~~gi~y----~S~ea~~l~~~i~e~i~~~a~~aS~eLAkE~G~~~~f~~S~--~~~G~l~~d~~~~~~~~~~~W~~Lr~ 605 (810)
++|++| +|.+|. +| +|+|++|.|+++. ..++++.. ....+|+.
T Consensus 483 ~~~gi~Y~~~y~s~~a~-------------------el-~e~g~~~~~~~~~~~~~~~~~~~-------~~~~~w~~--- 532 (739)
T 1l1l_A 483 TRLGNRVVTGFKDDFDP-------------------ET-HEAIKVPVYDKRAIKMVDQLYKA-------VVKADQDY--- 532 (739)
T ss_dssp HHHSSCSEEEEEEEECT-------------------TT-CCEEEEEEECHHHHHHHHHHHHH-------HHHHHHHH---
T ss_pred HHHCCCCCCCCCCHHHH-------------------HH-HHHCCCCCCCHHHHHHHHHHHHH-------HHHHHHHH---
T ss_conf 98098732000478889-------------------97-65347654588899999999998-------89999998---
Q ss_pred HHHHCCCCCC-CEECCCCCCCHHHHCCCCCCCCCCCCCEEEEECCCCCEEEECHHHHHHHHHCCCCHHHHHHHHHHCCCC
Q ss_conf 9984286554-300149995311004897522235545256882557527738788999998399919988898714985
Q 003575 606 MISKNGVRNS-LLVAPMPTASTSQILGNNECFEPYTSNIYTRRVLSGEFIVVNKHLLKDLTELGLWSHALKTKIIYENGS 684 (810)
Q Consensus 606 ~i~~~G~RNs-~l~AiaPT~s~S~i~g~t~gieP~~s~~y~r~~~~G~~~~vn~~l~~~L~~~g~~~~~~~~~i~~~~gs 684 (810)
++++|+||| ++||||||||||+|+|+|+||||+|+++|+|++ +|..+|++ +++|++.|+|+++ .+..++|+
T Consensus 533 -~~~~G~rns~~ltaIAPTgTiS~i~g~S~GIEP~~a~~~~rr~---~~~~~n~~-~~~l~~~g~~~~~---~i~~~~g~ 604 (739)
T 1l1l_A 533 -SKTLGCNESIKHTTVKPSGTVAKLAGASEGMHFHYGAYLIQRI---RFQDSDPL-LPALKACGYRTEA---DIYTENTT 604 (739)
T ss_dssp -HHHHTCCCCSCCEEBCCCHHHHHHHTCCCTTCCBSCSEEEEEE---EEETTCTH-HHHHHHTTCEEEE---CSSSTTEE
T ss_pred -HHHHCCCCHHHEEEECCCCCHHHHCCCCCCCCCCCEEEEEEEE---EECCCCHH-HHHHHHCCCCCHH---HHHHCCCC
T ss_conf -9971877731257878983077753888732523021578986---52036658-9999973999367---77625885
Q ss_pred CCCCCC-CCHHHHHHCCCCCCCCHHHHHHHHHHHCC-CCCCCCCEEEEECCCCHHHHHHHHHHHHHCCCCEEEEEECCCC
Q ss_conf 113568-96678861000014894999999998576-2434641057617999678999999999849965899843753
Q 003575 685 VSKISE-IPEELKAIYKTVWEIKQKTLVDMAADRGC-YIDQSQSLNIHMEQPDHGKLTSLHFYAWSKGMKTGMYYLRTRA 762 (810)
Q Consensus 685 i~~~~~-~p~~~k~~f~tA~ei~~~~~i~~~a~~Q~-~vDqsiS~tl~~~~~~~~~i~~~~~~Awk~GlKt~~yY~r~~~ 762 (810)
|+.+|. .|++++.+|+|||||+|++||+|+|++|| |||||||+|||++++..++|.++ ++||+.|||| +||+|+.+
T Consensus 605 v~~ip~~~~~~~~~~f~tA~eI~~~~~i~~~A~~Q~~wiDqsiS~Ti~~~~~~~~~l~~l-~~awk~GlK~-~yylR~~~ 682 (739)
T 1l1l_A 605 CVEFPIKAVGADNPNFASAGTVSIAEQFATQAFLQTYWSDNAVSCTITFQDSEGDQVESL-LRQYRFITKS-TSLLPYFG 682 (739)
T ss_dssp EEEEEEECTTTTCTTCCBTTTSCHHHHHHHHHHHHHHTCSSCBCCEEEECGGGGGGHHHH-HHHTTTTCSE-EEEEECCC
T ss_pred EEECCCCCCHHHHHHCCCHHHCCHHHHHHHHHHHCCCCCCCCCCEEEEECCCHHHHHHHH-HHHHHHCCCE-EEEECCCC
T ss_conf 452565572446655265975899999999999663662354401688678669999999-9999837768-99966887
Q ss_pred CC
Q ss_conf 22
Q 003575 763 AA 764 (810)
Q Consensus 763 ~~ 764 (810)
++
T Consensus 683 ~t 684 (739)
T 1l1l_A 683 GS 684 (739)
T ss_dssp CC
T ss_pred CC
T ss_conf 53
No 8
>1dq3_A Endonuclease; PI-PFUI, intein-encoded, hydrolase; 2.10A {Pyrococcus furiosus} SCOP: b.86.1.2 d.50.3.1 d.95.2.2 d.95.2.2
Probab=1.00 E-value=1 Score=70.79 Aligned_cols=68 Identities=6% Similarity=-0.108 Sum_probs=62.7
Q ss_pred CCEEEEEECCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHCCCCCCCCEEEEECCCCCCHHHHHHHHH
Q ss_conf 520000233799833578887778411899999999997408973457328850478666899999523
Q 003575 248 IGLSIHNIRASGSYIHGTNGSSNGIVPMLQVFNDTARYVDQGGGKRKGAFAIYLEPWHADIFEFLDLRK 316 (810)
Q Consensus 248 iG~~~s~iR~~Gs~I~g~~g~ssG~vpflk~~~~~~~~v~qgG~~Rrga~~~~l~~wH~DI~~Fl~~K~ 316 (810)
.|.++|.|||+|+.+.++.+.++|+++|+++++.+...+.|+| .|+|+.++.+..+|||+.+|+..|.
T Consensus 1 C~~~~s~i~~~~~~~~~~~~i~~g~~~~~~i~~~v~~~i~~~g-~~~~~~~~~V~s~d~d~~k~i~~kv 68 (454)
T 1dq3_A 1 CIDGKAKIIFENEGEEHLTTMEEMYERYKHLGEFYDEEYNRWG-IDVSNVPIYVKSFDPESKRVVKGKV 68 (454)
T ss_dssp CEETTCEEEEESSSCEEEEEHHHHHHHHGGGCEEEETTTTEEE-EECTTSCCEEEEEETTTTEEEEEEE
T ss_pred CCCCCCEEEEECCCEECCCCCCCCCHHHHHHHHHHHHHHHHCC-CEECCCCEEEEEECCCCCEEEEEEE
T ss_conf 9988767999089705024303452313546667777787429-3726876799997077787999675
No 9
>1h7b_A Anaerobic ribonucleotide-triphosphate reductase large chain; oxidoreductase, allosteric regulation, substrate specificity; 2.45A {Bacteriophage T4} SCOP: c.7.1.3 PDB: 1h79_A* 1h7a_A* 1h78_A 1hk8_A*
Probab=1.00 E-value=1 Score=28.65 Aligned_cols=251 Identities=12% Similarity=0.142 Sum_probs=135.3
Q ss_pred HHHHHHHHHHHHHHCCCEEEECHHHHHHCC-C---CCCC-EEE---EECCCCCCCCCCCCCCCEEEECCCCCCHHHHHCC
Q ss_conf 999999999877417730572013664189-8---9988-077---5338964344689997201011545701222005
Q 003575 387 RKLWFEILNSQIETGTPYMLFKDSCNRKSN-Q---QNLG-TIK---SSNLCTEIVEFSSPEETAVCNLASIALPRYVREK 458 (810)
Q Consensus 387 r~l~~~I~~~~~etG~P~i~f~D~~Nr~~~-~---~~~g-~I~---~sNlC~EI~~~~~~~e~~~CNL~sinL~~~v~~~ 458 (810)
.+|+...+++.....-|..++.|..-...+ . ...| +-. ..|..++-... -.+.....+|||++.--..
T Consensus 251 ~dl~~~a~~~~ak~~fpn~~~~d~~~~~~g~~~~~~~MgCR~~l~~~~~~~g~~~~~----g~Gn~gvvTINLpRia~~~ 326 (605)
T 1h7b_A 251 YDIKQLALECASKRMYPDIISAKNNKAITGSSVPVSPMGCRSFLSVWKDSTGNEILD----GRNNLGVVTLNLPRIALDS 326 (605)
T ss_dssp HHHHHHHHHHHHHHSCCEEEEHHHHHHHHCCSSCCCCBTTTBCCCCCBCTTSCBCCT----TCBEEEEEEEEHHHHHHTT
T ss_pred HHHHHHHHHHHCCCCCCCHHHCCCCCCCCCCCCCEEEECCHHCCHHHHHCCCCCCCC----CCCEEEEEEEEHHHHHHHH
T ss_conf 899999999867733675231033212488644112102211020344224786762----5441210784378899774
Q ss_pred CCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHCCC---------------C-----CHHHHHHHHHCCC
Q ss_conf 9764455422125678888667988999999999999998874189---------------9-----8488999851159
Q 003575 459 GVPVQSNVSKLVGSRDSKNRLFDFERLAEVTKIITENLNKIIDVNH---------------Y-----PIETTRRSNLRHR 518 (810)
Q Consensus 459 ~~~~~~~~~~~~~~~~~~~~~fd~~~l~~~v~~avr~LD~vId~~~---------------~-----p~~~~~~~~~~~R 518 (810)
+ ..+ .++...| |+.|.+.+.++.+.|..=.+.-. + |-+++.......|
T Consensus 327 ~----------~~a-~gd~~~F-~~~Ld~~l~l~~~~L~~r~~~l~~~~~~~~p~L~~~G~~~~~l~~~d~i~~~~~~~~ 394 (605)
T 1h7b_A 327 Y----------IGT-QFNEQKF-VELFNERMDLCFEALMCRISSLKGVKATVAPILYQEGAFGVRLKPDDDIIELFKNGR 394 (605)
T ss_dssp E----------ETT-EECHHHH-HHHHHHHHHHHHHHHHHHHHHTTTCBGGGCHHHHTSSTTSSCCCTTSBSHHHHTTTT
T ss_pred C----------CCC-CCCHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHCCCCCCCCCCCCCHHHHHCCCC
T ss_conf 1----------011-6879999-999999999999999999999987410478334317401035687640788861688
Q ss_pred C-CEEECCHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCC
Q ss_conf 7-021150499999982999999988999999999999999999999999709999997996666764320124799980
Q 003575 519 P-IGIGIQGLADTFILLGLPFESPEAQQLNKDIFETIYYHALKASAELAVKDGPYETYFGSPMSKGILQVDMWNITPSDR 597 (810)
Q Consensus 519 ~-IGiGv~Glad~L~~~gi~y~S~ea~~l~~~i~e~i~~~a~~aS~eLAkE~G~~~~f~~S~~~~G~l~~d~~~~~~~~~ 597 (810)
. +-||+.||++++. +. |.+|+.+|.++|...+.+.+ +|.|--=..+.+ |...
T Consensus 395 ~t~tiG~iGL~E~~~-l~-------a~~f~~~Il~~m~~~~~~~~----~e~g~~~~l~aT---------------PAEs 447 (605)
T 1h7b_A 395 SSVSLGYIGIHELNI-LV-------GRDIGREILTKMNAHLKQWT----ERTGFAFSLYST---------------PAEN 447 (605)
T ss_dssp SEEEEEEECHHHHHH-HH-------TSCCHHHHHHHHHHHHHHHH----HHHCCEEEEECC---------------CCTT
T ss_pred CCEEEEHHHHHHHHH-HH-------HHHHHHHHHHHHHHHHHHHH----HHHCCCEEEEEC---------------CCCC
T ss_conf 405542778999999-99-------99999999999999999999----987980267855---------------4453
Q ss_pred CCHHHHHHHHHHCCCCCCCEECCCCCCCHHHHCCCCCCCCCCCCCEEEEECCCCCEEEECHHHHHHHHHCCCCHHHHHHH
Q ss_conf 13899999998428655430014999531100489752223554525688255752773878899999839991998889
Q 003575 598 WDWSSLREMISKNGVRNSLLVAPMPTASTSQILGNNECFEPYTSNIYTRRVLSGEFIVVNKHLLKDLTELGLWSHALKTK 677 (810)
Q Consensus 598 ~~W~~Lr~~i~~~G~RNs~l~AiaPT~s~S~i~g~t~gieP~~s~~y~r~~~~G~~~~vn~~l~~~L~~~g~~~~~~~~~ 677 (810)
.--.-.+.+-+++|. |.|+|. .|++.|-|
T Consensus 448 ~~~Rfa~~D~k~fG~----------------i~g~td--~~YYTNS~--------------------------------- 476 (605)
T 1h7b_A 448 LCYRFCKLDTEKYGS----------------VKDVTD--KGWYTNSF--------------------------------- 476 (605)
T ss_dssp HHHHHHHHHHHHHCC----------------CTTTTS--SSSCCCTT---------------------------------
T ss_pred HHHHHHHHHHHHCCC----------------CCCCCC--CCCCCCCE---------------------------------
T ss_conf 889999999997598----------------679888--88777998---------------------------------
Q ss_pred HHHCCCCCCCCCCCCHHHHHHCCCCCCCCHHHHHHHHHHHCCCCCCCCCEEEEECCC--CHHHHHHHHHHHHHCCCC
Q ss_conf 871498511356896678861000014894999999998576243464105761799--967899999999984996
Q 003575 678 IIYENGSVSKISEIPEELKAIYKTVWEIKQKTLVDMAADRGCYIDQSQSLNIHMEQP--DHGKLTSLHFYAWSKGMK 752 (810)
Q Consensus 678 i~~~~gsi~~~~~~p~~~k~~f~tA~ei~~~~~i~~~a~~Q~~vDqsiS~tl~~~~~--~~~~i~~~~~~Awk~GlK 752 (810)
+ +| -..++++.+.|+..+..|++..-+...-+++++. +.+.+.++..++.+ |+-
T Consensus 477 ---------h---ip--------V~~~~~~~eki~~e~~~~~~~~GG~i~~v~l~~~~~n~~a~~~lv~~~~~-~i~ 532 (605)
T 1h7b_A 477 ---------H---VS--------VEENITPFEKISREAPYHFIATGGHISYVELPDMKNNLKGLEAVWDYAAQ-HLD 532 (605)
T ss_dssp ---------C---CC--------TTSCCCHHHHHHHHGGGGGTCTTBCCEEEECCCCTTCHHHHHHHHHHHHH-HCS
T ss_pred ---------E---EC--------CCCCCCHHHHHHHHCCCCCCCCCEEEEEEECCCCCCCHHHHHHHHHHHHH-CCC
T ss_conf ---------7---61--------79999989999842532440387159999738987999999999999984-898
No 10
>1h3o_B Transcription initiation factor TFIID 20/15 kDa subunits; transcription/TBP-associated factors, TBP-associated factors; 2.3A {Homo sapiens} SCOP: a.22.1.3
Probab=1.00 E-value=1 Score=14.44 Aligned_cols=32 Identities=13% Similarity=0.193 Sum_probs=24.4
Q ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCC
Q ss_conf 99889999999999999999999999997099
Q 003575 540 SPEAQQLNKDIFETIYYHALKASAELAVKDGP 571 (810)
Q Consensus 540 S~ea~~l~~~i~e~i~~~a~~aS~eLAkE~G~ 571 (810)
++++.++.-+++...-......|+.|||.|++
T Consensus 25 d~~vee~ll~lADdFV~~V~~~ac~lAKhR~s 56 (76)
T 1h3o_B 25 DEDVEEMLLQIADDFIESVVTAACQLARHRKS 56 (76)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTC
T ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCC
T ss_conf 98999999999999999999999999983599
Done!