RPS-BLAST 2.2.26 [Sep-21-2011]
Database: scop70_1_75
13,730 sequences; 2,407,596 total letters
Searching..................................................done
Query= 003575
(810 letters)
>d1rlra2 c.7.1.2 (A:222-748) R1 subunit of ribonucleotide reductase,
C-terminal domain {Escherichia coli [TaxId: 562]}
Length = 525
Score = 423 bits (1087), Expect = e-140
Identities = 140/571 (24%), Positives = 218/571 (38%), Gaps = 71/571 (12%)
Query: 216 SSCFLLCMKDDSIEGIYDTLKKCAIISKSAGGIGLSIHNIRASGSYIHGTNGSSNGIVPM 275
SSC L+ DS++ I T GIG++ IRA GS I G G +P
Sbjct: 2 SSCVLIEC-GDSLDSINATSSAIVKYVSQRAGIGINAGRIRALGSPIRGGEAFHTGCIPF 60
Query: 276 LQVFNDTARYVDQGGGKRKGAFAIYLEPWHADIFEFLDLRKNQGKEECRARDLFYALWVP 335
+ F + QGG R GA ++ WH ++ L L+ N+G E R R + Y + +
Sbjct: 61 YKHFQTAVKSCSQGG-VRGGAATLFYPMWHLEVESLLVLKNNRGVEGNRVRHMDYGVQIN 119
Query: 336 DLFMERVRDDGKWSLFCPSDASGLADSWGIEFEHLYSQYEE----EGRAKMVISARKLWF 391
L R+ +LF PSD GL D++ + E Y + + K + A +L+
Sbjct: 120 KLMYTRLLKGEDITLFSPSDVPGLYDAFFADQEEFERLYTKYEKDDSIRKQRVKAVELFS 179
Query: 392 EILNSQIETGTPYMLFK-DSCNRKSNQQNLGTIKSSNLCTEIVEFSSPEETAVCNLASIA 450
++ + TG Y+ + ++ SNLC EI + P IA
Sbjct: 180 LMMQERASTGRIYIQNVDHCNTHSPFDPAIAPVRQSNLCLEIALPTKPLNDVNDENGEIA 239
Query: 451 LPRYVREKGVPVQSNVSKLVGSRDSKNRLFDFERLAEVTKIITENLNKIIDVNHYPIETT 510
L + + + + L E+ + L+ ++D YPI
Sbjct: 240 LCTLSAF-----------------NLGAINNLDELDELAILAVRALDALLDYQDYPIPAA 282
Query: 511 RRSNLRHRPIGIGIQGLADTFILLGLPFESPEAQQLNKDIFETIYYHALKASAELAVKDG 570
+R + R +GIG+ A G + A L FE I Y+ LKAS ELA + G
Sbjct: 283 KRGAMGRRTLGIGVINFAYYLAKHGKRYSDGSANNLTHKTFEAIQYYLLKASNELAKEQG 342
Query: 571 PYETYFGSPMSKGILQVDMWNITPSD------RWDWSSLREMISKNGVRNSLLVAPMPTA 624
+ + +KGIL +D + +DW +LRE I +G+RNS L A MP+
Sbjct: 343 ACPWFNETTYAKGILPIDTYKKDLDTIANEPLHYDWEALRESIKTHGLRNSTLSALMPSE 402
Query: 625 STSQILGNNECFEPYTSNIYTRRVLSGEFIVVNKHLLKDLTELGLWSHALKTKIIYENGS 684
++SQI EP + + G V
Sbjct: 403 TSSQISNATNGIEPPRGYVSIKASKDGILRQVV--------------------------- 435
Query: 685 VSKISEIPEELKAIYKTVWEIK-QKTLVDMAADRGCYIDQSQSLNIHMEQPDH------- 736
E L Y+ +WE+ + + +IDQS S N + +
Sbjct: 436 -----PDYEHLHDAYELLWEMPGNDGYLQLVGIMQKFIDQSISANTNYDPSRFPSGKVPM 490
Query: 737 GKLTSLHFYAWSKGMKTGMYYLRTRAAADAI 767
+L A+ G+KT +YY TR D +
Sbjct: 491 QQLLKDLLTAYKFGVKT-LYYQNTRDDIDDL 520
>d1peqa2 c.7.1.2 (A:175-699) R1 subunit of ribonucleotide reductase,
C-terminal domain {Salmonella typhimurium [TaxId:
90371]}
Length = 525
Score = 360 bits (923), Expect = e-116
Identities = 132/572 (23%), Positives = 225/572 (39%), Gaps = 74/572 (12%)
Query: 215 LSSCFLLCMKDDSIEGIYDTLKKCAIISKSAGGIGLSIHNIRASGSYIHGTNGSSNGIVP 274
L SCFLL + +D++E I + +SK GG+ + N+R +G+ I S+G++P
Sbjct: 1 LVSCFLLRI-EDNMESIGRAVNSALQLSKRGGGVAFLLSNLREAGAPIKRIENQSSGVIP 59
Query: 275 MLQVFNDTARYVDQGGGKRKGAFAIYLEPWHADIFEFLDLRKNQGKEECRARDLFYALWV 334
++++ D Y +Q G R+GA A+YL H DI FLD ++ E+ R + L + +
Sbjct: 60 VMKMLEDAFSYANQLG-ARQGAGAVYLHAHHPDILRFLDTKRENADEKIRIKTLSLGVVI 118
Query: 335 PDLFMERVRDDGKWSLFCPSDASGLADSWGIEF---EHLYSQYEEEGRAKMVISARKLWF 391
PD+ +++ + +LF P D + E + K I+AR +
Sbjct: 119 PDITFRLAKENAQMALFSPYDIQRRYGKPFGDIAISERYDELIADPHVRKTYINARDFFQ 178
Query: 392 EILNSQIETGTPYMLFKDSCNRKSNQQNLGTIKSSNLCTEIVEFSSPEETAVCNLASIAL 451
+ Q E+G PY++F+D+ NR + I SNLC+EI++ +S NL +
Sbjct: 179 TLAEIQFESGYPYIMFEDTVNRANPIAG--RINMSNLCSEILQVNSASRY-DDNLDYTHI 235
Query: 452 PRYVREKGVPVQSNVSKLVGSRDSKNRLFDFERLAEVTKIITENLNKIIDVNHY-PIETT 510
+ + + D + + L + D++H + +
Sbjct: 236 GHDI------------SCNLGSLNIAHVMDSPDIGRTVETAIRGLTAVSDMSHIRSVPSI 283
Query: 511 RRSNLRHRPIGIGIQGLADTFILLGLPFESPEAQQLNKDIFETIYYHALKASAELAVKDG 570
N IG+G L G+ + SPEA F TI +HA+ S LA + G
Sbjct: 284 AAGNAASHAIGLGQMNLHGYLAREGIAYGSPEALDFTNLYFYTITWHAVHTSMRLARERG 343
Query: 571 P-YETYFGSPMSKGIL------------------QVDMWNITPSDRWDWSSLREMISKNG 611
+ + S + G IT R W LR+ + + G
Sbjct: 344 KTFAGFAQSRYASGDYFTQYLQDDWQPKTAKVRALFARSGITLPTREMWLKLRDDVMRYG 403
Query: 612 VRNSLLVAPMPTASTSQILGNNECFEPYTSNIYTRRV-LSGEFIVVNKHLLKDLTELGLW 670
+ N L A PT S S I P + I R+ +G +
Sbjct: 404 IYNQNLQAVPPTGSISYINHATSSIHPIVAKIEIRKEGKTGRVYYPAPFM---------- 453
Query: 671 SHALKTKIIYENGSVSKISEIPEELKAIYKTVWEIKQKTLVDMAADRGCYIDQSQSLNIH 730
E +Y+ ++I + ++D A+ ++DQ SL +
Sbjct: 454 ---------------------TNENLDMYQDAYDIGPEKIIDTYAEATRHVDQGLSLTLF 492
Query: 731 M-EQPDHGKLTSLHFYAWSKGMKTGMYYLRTR 761
+ + YAW KG+K+ +YY+R R
Sbjct: 493 FPDTATTRDINKAQIYAWRKGIKS-LYYIRLR 523
>d1rlra1 a.98.1.1 (A:10-221) R1 subunit of ribonucleotide reductase,
N-terminal domain {Escherichia coli [TaxId: 562]}
Length = 212
Score = 183 bits (464), Expect = 9e-54
Identities = 51/217 (23%), Positives = 85/217 (39%), Gaps = 13/217 (5%)
Query: 6 RDGRKEPVRFDKITARLKKLSYGLSKEHCDPVLVAQKVCAGVYKGVTTTQLDELAAETAA 65
RDG E + DKI L + GL + V + Y G+ T+ + E + AA
Sbjct: 1 RDGSTERINLDKIHRVLDWAAEGL--HNVSISQVELRSHIQFYDGIKTSDIHETIIKAAA 58
Query: 66 A-MTVNHPDYALLAGRVAVSNLHKITKNSFSETIKDMYNYYNKRSGKKASLVADDVYEII 124
++ + PDY LA R+A+ +L K F + GK + + +
Sbjct: 59 DLISRDAPDYQYLAARLAIFHLRKKAYGQFEPPALYDHVVKMVEMGKYDN---HLLEDYT 115
Query: 125 MKNAACLDGAIIYDRDFDFDYFGFKTLERSYLL--KMDSRVVERPQHMLMRVSVGIHKDD 182
+ +D I +DRD F Y K LE YL+ ++ + E Q + + V+ + +
Sbjct: 116 EEEFKQMDTFIDHDRDMTFSYAAVKQLEGKYLVQNRVTGEIYESAQFLYILVAACLFSNY 175
Query: 183 T-----DSALKTYHLMSQHWFTHATPTLFNAGTPQPQ 214
+ Y +S + TP + TP Q
Sbjct: 176 PRETRLQYVKRFYDAVSTFKISLPTPIMSGVRTPTRQ 212
>d1l1la_ c.7.1.4 (A:) B12-dependent (class II) ribonucleotide
reductase {Lactobacillus leichmannii [TaxId: 28039]}
Length = 721
Score = 156 bits (394), Expect = 4e-40
Identities = 65/537 (12%), Positives = 121/537 (22%), Gaps = 95/537 (17%)
Query: 226 DSIEGIYDTLKK------CAIISKSAGGIGLSIHNIRASGSYIHGTNGSSNGIVPMLQVF 279
D+ EG + L + +IR G+ IHG G+++G +P++ +
Sbjct: 219 DTREGWVLANALLIDLHFAQTNPDRKQKLILDLSDIRPYGAEIHGFGGTASGPMPLISML 278
Query: 280 NDTARYVDQGGGKRKGAFAIYLEPWHADIFEFLDLRKNQGKEECRARDLFYALWVPDLFM 339
D ++ G R A + AL D
Sbjct: 279 LDVNEVLNNKAGGRLTAVDAADICNLIGKAVVAGNVRR---------SAELALGSNDDQD 329
Query: 340 ERVRDDGKWSLFCPSDASGLADSWGIEFEHLYSQYEEEGRAKMVISARKLWFEILNSQIE 399
+ L AS + + F + I E
Sbjct: 330 FISMKQDQEKLMHHRWASNNSVAVDSAFSG--------------------YQPIAAGIRE 369
Query: 400 TGTPYMLFKDSCNRKS--NQQNLGTIKSSNLCTEIVEFSSPEETAVCNLASIALPRYVRE 457
G P ++ D I T S CNL +
Sbjct: 370 NGEPGIVNLDLSKNYGRIVDGYQAGIDGDVEGTNPCGEISLANGEPCNLFEVFPLIAEE- 428
Query: 458 KGVPVQSNVSKLVGSRDSKNRLFDFERLAEVTKIITENLNKIIDVNHYPIETTRRSNLRH 517
+ + K + + Y E +R ++
Sbjct: 429 ------------------------QGWDLQEVFALAARYAKRVTFSPYDWEISREIIQKN 464
Query: 518 RPIGIGIQGLADTFILLGLPFESPEAQQLNKDIFETIYYHALKASAELAVKDGPYETYFG 577
R IGI + G+ D + + +A +
Sbjct: 465 RRIGISMSGIQDWLLTRLGNRVVTGF-------KDDFDPETHEAIKVPVYDKRAIKMVDQ 517
Query: 578 SPMSKGILQVDMWNITPSDRWDWSSLREMISKNGVRNSLLVAPMPTASTSQ-ILGNNECF 636
+ ++ G S+ + + T + G +E
Sbjct: 518 LYK-----------------AVVKADQDYSKTLGCNESIKHTTVKPSGTVAKLAGASEGM 560
Query: 637 EPYTSNIYTRRVLSGEFIVVNKHLLKDLTELGLWSHALKTKIIYENGSVSKISEIPEELK 696
+ +R+ + + LL L G + A V +
Sbjct: 561 HFHYGAYLIQRIRFQD----SDPLLPALKACGYRTEAD--IYTENTTCVEFPIKAVGADN 614
Query: 697 AIYKTVWEIKQKTLVDMAADR-GCYIDQSQSLNIHMEQPDHGKLTSLHFYAWSKGMK 752
+ + + A + D + S I Q G + K
Sbjct: 615 PNFASAGTVSIAEQFATQAFLQTYWSDNAVSCTITF-QDSEGDQVESLLRQYRFITK 670
>d1peqa1 a.98.1.1 (A:13-174) R1 subunit of ribonucleotide reductase,
N-terminal domain {Salmonella typhimurium [TaxId:
90371]}
Length = 162
Score = 115 bits (289), Expect = 2e-30
Identities = 29/161 (18%), Positives = 51/161 (31%), Gaps = 23/161 (14%)
Query: 72 PDYALLAGRVAVSNLHKITKN------------SFSETIKDMYNYYNKRSGKKASLVADD 119
DY L + NL+ + F+ ++ + + + +LV +
Sbjct: 2 MDYHALNAML---NLYDKAGHIQFDKDQQAIDAFFATHVRPHSVTFASQHERLGTLVREG 58
Query: 120 VYEIIM------KNAACLDGAIIYDRDFDFDYFGFKTLERSYLLKMDS--RVVERPQHML 171
Y+ + L + G SY LK R +E + +
Sbjct: 59 YYDDAVLARYDRAFVLRLFEHAHASGFRFQTFLGAWKFYTSYTLKTFDGKRYLEHFEDRV 118
Query: 172 MRVSVGIHKDDTDSALKTYHLMSQHWFTHATPTLFNAGTPQ 212
V++ + + D A + M F ATPT N G Q
Sbjct: 119 TMVALTLAQGDETLATQLTDEMLSGRFQPATPTFLNCGKQQ 159
>d1hwma_ d.165.1.1 (A:) Ebulin A-chain {Sambucus ebulus [TaxId:
28503]}
Length = 251
Score = 26.8 bits (59), Expect = 9.1
Identities = 22/110 (20%), Positives = 40/110 (36%), Gaps = 19/110 (17%)
Query: 181 DDTDSALKTYHLMSQHWF-----THATPTLFNAGTPQPQLSSCFLLCMKDDSIEGIYDTL 235
D T+ L + +F LF GT Q LS G YD L
Sbjct: 72 DVTNLYLVAFSANGNSYFFKDATELQKSNLFL-GTTQHTLS-----------FTGNYDNL 119
Query: 236 KKCAIISKSAGGIGLSIHNIRASGSYIHGTNGSSNGIVPMLQVFNDTARY 285
+ A + I L + + + + + G + ++ ++Q+ + AR+
Sbjct: 120 ETAAGTRRE--SIELGPNPLDGAITSLWYDGGVARSLLVLIQMVPEAARF 167
>d1gega_ c.2.1.2 (A:) meso-2,3-butanediol dehydrogenase {Klebsiella
pneumoniae [TaxId: 573]}
Length = 255
Score = 26.7 bits (58), Expect = 9.8
Identities = 7/17 (41%), Positives = 12/17 (70%)
Query: 236 KKCAIISKSAGGIGLSI 252
KK A+++ + GIG +I
Sbjct: 1 KKVALVTGAGQGIGKAI 17
Database: scop70_1_75
Posted date: Mar 27, 2010 6:21 PM
Number of letters in database: 2,407,596
Number of sequences in database: 13,730
Lambda K H
0.318 0.134 0.398
Gapped
Lambda K H
0.267 0.0462 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 3,012,821
Number of extensions: 143250
Number of successful extensions: 420
Number of sequences better than 10.0: 1
Number of HSP's gapped: 400
Number of HSP's successfully gapped: 9
Length of query: 810
Length of database: 2,407,596
Length adjustment: 93
Effective length of query: 717
Effective length of database: 1,130,706
Effective search space: 810716202
Effective search space used: 810716202
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 57 (26.4 bits)