Query 003576
Match_columns 810
No_of_seqs 598 out of 4625
Neff 8.1
Searched_HMMs 29240
Date Tue Mar 26 18:26:47 2013
Command hhsearch -i /local_scratch/syshi/lefta3m/003576.a3m -d /local_scratch/syshi/pdb70.hhm -v 0 -o /local_scratch/syshi/H1_1624-1627//hhsearch_pdb/003576hhsearch_pdb
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 4aoj_A High affinity nerve gro 1.0 1 1 408.4 22.6 257 456-726 41-319 (329)
2 4asz_A BDNF/NT-3 growth factor 1.0 1 1 406.7 19.0 257 456-726 13-289 (299)
3 3omv_A RAF proto-oncogene seri 1.0 1 1 404.3 20.4 260 455-726 35-300 (307)
4 4gt4_A Tyrosine-protein kinase 1.0 1 1 403.5 18.9 254 457-724 27-304 (308)
5 4b9d_A Serine/threonine-protei 1.0 1 1 396.8 17.5 246 456-718 24-275 (350)
6 4ase_A Vascular endothelial gr 1.0 1 1 394.0 18.8 267 447-726 55-347 (353)
7 4fie_A Serine/threonine-protei 1.0 1 1 392.6 21.5 241 456-715 151-397 (423)
8 4fih_A Serine/threonine-protei 1.0 1 1 391.7 20.3 241 456-715 74-320 (346)
9 4g3f_A NF-kappa-beta-inducing 1.0 1 1 388.4 19.3 253 455-726 57-316 (336)
10 4aw0_A HPDK1, 3-phosphoinositi 1.0 1 1 384.9 19.3 243 456-715 32-281 (311)
No 1
>4aoj_A High affinity nerve growth factor receptor; transferase, inhibitor; HET: V4Z; 2.75A {Homo sapiens}
Probab=1.00 E-value=1 Score=408.36 Aligned_cols=257 Identities=25% Similarity=0.425 Sum_probs=216.3
Q ss_pred CCCCCCEEECCCCCEEEEEEEEC-------CEEEEEEEECCCCCCCHHHHHHHHHHHHHCCCCCEEEEECEECCCC--EE
Q ss_conf 17644402236770899999989-------9389999970568400598999999998158995665603005987--27
Q 003576 456 LSFSENLRIGMGGYGTVYKGTFH-------HTFAAVKVLQSKGNIQNKQFLQELEVLSKIRHPHLLLLLGACPDHG--CL 526 (810)
Q Consensus 456 ~~f~~~~~iG~G~~g~Vyk~~~~-------~~~vAvK~l~~~~~~~~~~f~~Ev~iL~~l~Hpniv~l~g~~~~~~--~l 526 (810)
.+|....+||+|+||.||+|.+. +..||||+++.......+.|.+|+.+|++++|||||+++|+|.+.. +|
T Consensus 41 ~d~~l~~~LG~G~fG~Vy~a~~~~~~~~~~~~~vAvK~l~~~~~~~~~~f~~E~~il~~l~HpnIV~l~g~~~~~~~~~l 120 (329)
T 4aoj_A 41 RDIVLKWELGEGAFGKVFLAECHNLLPEQDKMLVAVKALKEASESARQDFQREAELLTMLQHQHIVRFFGVCTEGRPLLM 120 (329)
T ss_dssp GGEEEEEEEEECSSEEEEEEEESSSCC---CEEEEEEEESCCSHHHHHHHHHHHHHHTTCCCTTBCCEEEEECSSSSEEE
T ss_pred HHEEEEEEECCCCCCEEEEEEECCCCCCCCCEEEEEEEECCCCHHHHHHHHHHHHHHHHCCCCCCCCEEEEEEECCEEEE
T ss_conf 99288779714778489989987866577896999999775797999999999999985899899969899998998999
Q ss_pred EEEECCCCCHHHHHHHCCC------------CCCCCHHHHHHHHHHHHHHHHHHHHCCCCCEEECCCCCCCEEECCCCCE
Q ss_conf 9995248997788741299------------9999989999999999999999761599888815799975685489713
Q 003576 527 VYEYMENGSLEDRLYRKNN------------TPPIPWFERYRIAWEVASALAFLHNTKPKPIIHRDMKPGNILLDHNLVS 594 (810)
Q Consensus 527 V~Ey~~~gsL~~~l~~~~~------------~~~l~~~~~~~i~~~ia~aL~~LH~~~~~~iiHrDLKp~NILl~~~~~~ 594 (810)
|||||++|+|.++|..... ..+++|..++.|+.|++.||.|||+.+ ||||||||+|||++.++.+
T Consensus 121 V~Ey~~~G~L~~~l~~~~~~~~~~~~~~~~~~~~l~~~~~~~i~~qia~gl~yLH~~~---iiHRDLKp~NILl~~~~~~ 197 (329)
T 4aoj_A 121 VFEYMRHGDLNRFLRSHGPDAKLLAGGEDVAPGPLGLGQLLAVASQVAAGMVYLAGLH---FVHRDLATRNCLVGQGLVV 197 (329)
T ss_dssp EEECCTTCBHHHHHHTSSCC-----------CCSCCHHHHHHHHHHHHHHHHHHHHTT---CCCSCCCGGGEEEETTTEE
T ss_pred EEECCCCCCHHHHHHHCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHCCC---EECCCCCHHHEEECCCCCE
T ss_conf 9982799939999986075410012211245788999999999999999999984088---4226666764898899968
Q ss_pred EEEEECCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHH-CCCCCCCCCHHHHHHCC
Q ss_conf 89220241004899986444433567756755568632236988973223559999999983-79974332002443100
Q 003576 595 KIGDVGLSTMLNSDPSFVSTTYKNTGPVGTLCYIDPEYQRTGLISPKSDVYAYGMVILQLLT-AKPAIAITHKVETAIDE 673 (810)
Q Consensus 595 kI~DFGla~~~~~~~~~~~~~~~~~~~~gt~~Y~aPE~~~~~~~s~~sDi~SlGvil~ellt-G~~Pf~~~~~~~~~~~~ 673 (810)
||+|||+|+.+...... ...+..+||+.|||||++.+..++.++|||||||+||||+| |++||......+
T Consensus 198 Ki~DFGla~~~~~~~~~----~~~~~~~gt~~ymAPE~~~~~~~~~~sDvwS~Gvvl~Ellt~G~~Pf~~~~~~~----- 268 (329)
T 4aoj_A 198 KIGDFGMSRDIYSTDYY----RVGGRTMLPIRWMPPESILYRKFTTESDVWSFGVVLWEIFTYGKQPWYQLSNTE----- 268 (329)
T ss_dssp EECCCC--------------------CCCCGGGCCHHHHTTCCCCHHHHHHHHHHHHHHHHTTSCCTTCSSCHHH-----
T ss_pred EECCCCCCEECCCCCCC----EECCCCCCCCCCCCHHHHCCCCCCCCCCCCCHHHHHHHHHCCCCCCCCCCCHHH-----
T ss_conf 97666033365678753----004764556566582654479999663001057899999828999999989999-----
Q ss_pred CHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHCCCCCCCCCCCHHHHHHHHHH
Q ss_conf 03678743207999946789999999997500289999611001358987897
Q 003576 674 DNLAEILDAQAGDWPIKETKELAALGLSCAELRRKDRPDLKNQVLPVLERLKE 726 (810)
Q Consensus 674 ~~l~~~ld~~~~~~p~~~~~~l~~li~~Cl~~~p~~RPs~~~~v~~~L~~l~~ 726 (810)
.+..+........|..+++++.+|+.+||+.+|.+||++. +|+..|+.+..
T Consensus 269 -~~~~i~~g~~~~~p~~~~~~~~~li~~cl~~dP~~RPs~~-ei~~~L~~l~~ 319 (329)
T 4aoj_A 269 -AIDCITQGRELERPRACPPEVYAIMRGCWQREPQQRHSIK-DVHARLQALAQ 319 (329)
T ss_dssp -HHHHHHHTCCCCCCTTCCHHHHHHHHHHCCSSTTTSCCHH-HHHHHHHHHHH
T ss_pred -HHHHHHCCCCCCCCCCCCHHHHHHHHHHCCCCHHHCCCHH-HHHHHHHHHHH
T ss_conf -9999980898998644639999999997475965792999-99999998745
No 2
>4asz_A BDNF/NT-3 growth factors receptor; transferase, TRKA, TRKB; 1.70A {Homo sapiens} PDB: 4at3_A* 4at4_A* 4at5_A* 3v5q_A*
Probab=1.00 E-value=1 Score=406.74 Aligned_cols=257 Identities=24% Similarity=0.413 Sum_probs=216.4
Q ss_pred CCCCCCEEECCCCCEEEEEEEEC-------CEEEEEEEECCCCCCCHHHHHHHHHHHHHCCCCCEEEEECEECCCC--EE
Q ss_conf 17644402236770899999989-------9389999970568400598999999998158995665603005987--27
Q 003576 456 LSFSENLRIGMGGYGTVYKGTFH-------HTFAAVKVLQSKGNIQNKQFLQELEVLSKIRHPHLLLLLGACPDHG--CL 526 (810)
Q Consensus 456 ~~f~~~~~iG~G~~g~Vyk~~~~-------~~~vAvK~l~~~~~~~~~~f~~Ev~iL~~l~Hpniv~l~g~~~~~~--~l 526 (810)
.+|...++||+|+||.||+|.+. +..||||+++.......+.|.+|+.+|++++|||||+++|+|.+.. +|
T Consensus 13 ~~~~l~~~lG~G~fG~Vy~a~~~~~~~~~~~~~vAvK~l~~~~~~~~~~f~~E~~il~~l~HpnIV~l~g~~~~~~~~~l 92 (299)
T 4asz_A 13 HNIVLKRELGEGAFGKVFLAECYNLCPEQDKILVAVKTLKDASDNARKDFHREAELLTNLQHEHIVKFYGVCVEGDPLIM 92 (299)
T ss_dssp GGEEEEEEEEC--CCCEEEEEECSCC----CEEEEEEEECSCCHHHHHHHHHHHHHHTTCCCTTBCCEEEEECSSSSEEE
T ss_pred HHEEEEEEEEECCCCEEEEEEECCCCCCCCCEEEEEEEECCCCHHHHHHHHHHHHHHHHCCCCCCCCEEEEEEECCEEEE
T ss_conf 89298249820788299999987766677887999999677785899999999999985899888628799956998999
Q ss_pred EEEECCCCCHHHHHHHCC----------CCCCCCHHHHHHHHHHHHHHHHHHHHCCCCCEEECCCCCCCEEECCCCCEEE
Q ss_conf 999524899778874129----------9999998999999999999999976159988881579997568548971389
Q 003576 527 VYEYMENGSLEDRLYRKN----------NTPPIPWFERYRIAWEVASALAFLHNTKPKPIIHRDMKPGNILLDHNLVSKI 596 (810)
Q Consensus 527 V~Ey~~~gsL~~~l~~~~----------~~~~l~~~~~~~i~~~ia~aL~~LH~~~~~~iiHrDLKp~NILl~~~~~~kI 596 (810)
|||||++|+|.++|...+ ....++|..++.|+.|++.||.|||+.+ |+||||||+|||++.++.+||
T Consensus 93 V~Ey~~~G~L~~~l~~~~~~~~~~~~~~~~~~l~~~~~~~i~~qia~gl~yLH~~~---iiHRDlKp~NILl~~~~~~Ki 169 (299)
T 4asz_A 93 VFEYMKHGDLNKFLRAHGPDAVLMAEGNPPTELTQSQMLHIAQQIAAGMVYLASQH---FVHRDLATRNCLVGENLLVKI 169 (299)
T ss_dssp EEECCTTCBHHHHHHHTSHHHHHC----CCCCCCHHHHHHHHHHHHHHHHHHHHTT---CCCSCCSGGGEEECGGGCEEE
T ss_pred EEECCCCCCHHHHHHHCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHCC---CCCCCCCHHHEEECCCCCEEE
T ss_conf 99858999689999860864211123577788999999999999999999997599---046765776389879986898
Q ss_pred EEECCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHH-CCCCCCCCCHHHHHHCCCH
Q ss_conf 220241004899986444433567756755568632236988973223559999999983-7997433200244310003
Q 003576 597 GDVGLSTMLNSDPSFVSTTYKNTGPVGTLCYIDPEYQRTGLISPKSDVYAYGMVILQLLT-AKPAIAITHKVETAIDEDN 675 (810)
Q Consensus 597 ~DFGla~~~~~~~~~~~~~~~~~~~~gt~~Y~aPE~~~~~~~s~~sDi~SlGvil~ellt-G~~Pf~~~~~~~~~~~~~~ 675 (810)
+|||+|+........ .......||+.|||||++.++.|+.++|||||||++|||+| |++||......+ .
T Consensus 170 ~DFGla~~~~~~~~~----~~~~~~~gt~~ymAPE~~~~~~~~~k~DVwS~Gvvl~Ellt~G~~Pf~~~~~~~------~ 239 (299)
T 4asz_A 170 GDFGMSRDVYSTDYY----RVGGHTMLPIRWMPPESIMYRKFTTESDVWSLGVVLWEIFTYGKQPWYQLSNNE------V 239 (299)
T ss_dssp CCCSCHHHHTGGGCE----EETTTEEECGGGCCHHHHHHCCCCHHHHHHHHHHHHHHHHTTTCCTTTTSCHHH------H
T ss_pred CCCCCCEECCCCCCE----EECCCEECCHHHCCHHHHCCCCCCCHHHHHHHHHHHHHHHCCCCCCCCCCCHHH------H
T ss_conf 873001006788741----664751347010388987079997036677889999999808999999989999------9
Q ss_pred HHHHHHHHCCCCCHHHHHHHHHHHHHHHHHCCCCCCCCCCCHHHHHHHHHH
Q ss_conf 678743207999946789999999997500289999611001358987897
Q 003576 676 LAEILDAQAGDWPIKETKELAALGLSCAELRRKDRPDLKNQVLPVLERLKE 726 (810)
Q Consensus 676 l~~~ld~~~~~~p~~~~~~l~~li~~Cl~~~p~~RPs~~~~v~~~L~~l~~ 726 (810)
+..+........|..++.++.+|+.+||+.+|.+||++. +++..|+.+..
T Consensus 240 ~~~i~~~~~~~~p~~~~~~~~~li~~cl~~dP~~RPs~~-~i~~~L~~~~~ 289 (299)
T 4asz_A 240 IECITQGRVLQRPRTCPQEVYELMLGCWQREPHMRKNIK-GIHTLLQNLAK 289 (299)
T ss_dssp HHHHHHTCCCCCCTTCCHHHHHHHHHHTCSSGGGSCCHH-HHHHHHHHHHH
T ss_pred HHHHHCCCCCCCCCCCHHHHHHHHHHHCCCCHHHCCCHH-HHHHHHHHHHH
T ss_conf 999980898899741439999999997687966892999-99999987776
No 3
>3omv_A RAF proto-oncogene serine/threonine-protein kinas; serine/threonine-protein kinase, transferase; HET: SM5; 4.00A {Homo sapiens}
Probab=1.00 E-value=1 Score=404.30 Aligned_cols=260 Identities=31% Similarity=0.461 Sum_probs=207.6
Q ss_pred HCCCCCCEEECCCCCEEEEEEEECCEEEEEEEECCCC--CCCHHHHHHHHHHHHHCCCCCEEEEECEECCCC-EEEEEEC
Q ss_conf 2176444022367708999999899389999970568--400598999999998158995665603005987-2799952
Q 003576 455 TLSFSENLRIGMGGYGTVYKGTFHHTFAAVKVLQSKG--NIQNKQFLQELEVLSKIRHPHLLLLLGACPDHG-CLVYEYM 531 (810)
Q Consensus 455 ~~~f~~~~~iG~G~~g~Vyk~~~~~~~vAvK~l~~~~--~~~~~~f~~Ev~iL~~l~Hpniv~l~g~~~~~~-~lV~Ey~ 531 (810)
..+|....+||+|+||.||+|++.+ .||||+++... ....+.|.+|+.+|++++|||||+++|+|.+.. +||||||
T Consensus 35 ~~~l~l~~~iG~G~fG~Vy~~~~~~-~vAvK~~~~~~~~~~~~~~f~~E~~il~~l~HpNIV~l~g~~~~~~~~iVmEy~ 113 (307)
T 3omv_A 35 ASEVMLSTRIGSGSFGTVYKGKWHG-DVAVKILKVVDPTPEQFQAFRNEVAVLRKTRHVNILLFMGYMTKDNLAIVTQWC 113 (307)
T ss_dssp TTSCCEEEECCCCSSSEEEEEESSS-EEEEEECCCSSCCHHHHHHHHHHHHHHTTCCCTTBCCEEEEECSSSCEEEEECC
T ss_pred HHHEEEEEEEEECCCCEEEEEEECC-CEEEEEEEECCCCHHHHHHHHHHHHHHHHCCCCCEEEEEEEEECCEEEEEEECC
T ss_conf 7994984498208886899999899-689999972689999999999999999858998874699999789589999748
Q ss_pred CCCCHHHHHHHCCCCCCCCHHHHHHHHHHHHHHHHHHHHCCCCCEEECCCCCCCEEECCCCCEEEEEECCCCCCCCCCCC
Q ss_conf 48997788741299999998999999999999999976159988881579997568548971389220241004899986
Q 003576 532 ENGSLEDRLYRKNNTPPIPWFERYRIAWEVASALAFLHNTKPKPIIHRDMKPGNILLDHNLVSKIGDVGLSTMLNSDPSF 611 (810)
Q Consensus 532 ~~gsL~~~l~~~~~~~~l~~~~~~~i~~~ia~aL~~LH~~~~~~iiHrDLKp~NILl~~~~~~kI~DFGla~~~~~~~~~ 611 (810)
+||+|.++|.... .+++|..+..|+.|++.||.|||+.+ ||||||||+|||++.++.+||+|||+|+........
T Consensus 114 ~gGsL~~~l~~~~--~~l~~~~~~~i~~qia~gL~yLH~~~---IiHRDlKp~NILl~~~~~~Ki~DFGla~~~~~~~~~ 188 (307)
T 3omv_A 114 EGSSLYKHLHVQE--TKFQMFQLIDIARQTAQGMDYLHAKN---IIHRDMKSNNIFLHEGLTVKIGDFGLATVKSRWSGS 188 (307)
T ss_dssp SSCBHHHHHHTSC--CCCCHHHHHHHHHHHHHHHHHHHHTT---CBCSCCCSSSEEEETTEEEEECCCSSCBC-------
T ss_pred CCCCHHHHHHHCC--CCCCHHHHHHHHHHHHHHHHHHHHCC---CCCCCCCHHHEEECCCCCEEEEECCCCEECCCCCCC
T ss_conf 9987889875248--99999999999999999999997799---527855789978889990899441575424667764
Q ss_pred CCCCCCCCCCCCCCCCCCCCCCCC---CCCCCCCHHHHHHHHHHHHHHCCCCCCCCCHHHHHHCCCHHHHHHHHHCCCCC
Q ss_conf 444433567756755568632236---98897322355999999998379974332002443100036787432079999
Q 003576 612 VSTTYKNTGPVGTLCYIDPEYQRT---GLISPKSDVYAYGMVILQLLTAKPAIAITHKVETAIDEDNLAEILDAQAGDWP 688 (810)
Q Consensus 612 ~~~~~~~~~~~gt~~Y~aPE~~~~---~~~s~~sDi~SlGvil~elltG~~Pf~~~~~~~~~~~~~~l~~~ld~~~~~~p 688 (810)
......+||+.|||||++.+ +.|+.++|||||||+||||+||++||........... ........+.....+
T Consensus 189 ----~~~~~~~GT~~ymAPE~l~~~~~~~y~~ksDVwS~Gvvl~Elltg~~Pf~~~~~~~~~~~-~~~~~~~~p~~~~~~ 263 (307)
T 3omv_A 189 ----QQVEQPTGSVLWMAPEVIRMQDNNPFSFQSDVYSYGIVLYELMTGELPYSHINNRDQIIF-MVGRGYASPDLSKLY 263 (307)
T ss_dssp ---------CCCCTTSCCHHHHHCCSSCCCCHHHHHHHHHHHHHHHHHSSCTTTTCCCHHHHHH-HHHTTCCCCCSTTSC
T ss_pred ----EEECCCCCCCCCCCHHHHHCCCCCCCCCHHHHHHHHHHHHHHHHCCCCCCCCCHHHHHHH-HHHCCCCCCCCCCCC
T ss_conf ----031564468772498786146899878687757289999999978899899996999999-996588888720035
Q ss_pred HHHHHHHHHHHHHHHHHCCCCCCCCCCCHHHHHHHHHH
Q ss_conf 46789999999997500289999611001358987897
Q 003576 689 IKETKELAALGLSCAELRRKDRPDLKNQVLPVLERLKE 726 (810)
Q Consensus 689 ~~~~~~l~~li~~Cl~~~p~~RPs~~~~v~~~L~~l~~ 726 (810)
..++..+.+|+.+||+.+|.+||++. +++..|+.++.
T Consensus 264 ~~~~~~l~~li~~cl~~dP~~RPs~~-ei~~~Le~l~~ 300 (307)
T 3omv_A 264 KNCPKAMKRLVADCVKKVKEERPLFP-QILSSIELLQH 300 (307)
T ss_dssp TTSCHHHHHHHHHHTCSSSTTSCCHH-HHHHHHHHHHT
T ss_pred CCCHHHHHHHHHHHCCCCHHHCCCHH-HHHHHHHHHHC
T ss_conf 44569999999997577976890989-99999999745
No 4
>4gt4_A Tyrosine-protein kinase transmembrane receptor RO; ATP binding, phosphorylation, transferase; 2.41A {Homo sapiens} PDB: 3zzw_A
Probab=1.00 E-value=1 Score=403.47 Aligned_cols=254 Identities=20% Similarity=0.340 Sum_probs=208.9
Q ss_pred CCCCCEEECCCCCEEEEEEEEC-------CEEEEEEEECCCC-CCCHHHHHHHHHHHHHCCCCCEEEEECEECCCC--EE
Q ss_conf 7644402236770899999989-------9389999970568-400598999999998158995665603005987--27
Q 003576 457 SFSENLRIGMGGYGTVYKGTFH-------HTFAAVKVLQSKG-NIQNKQFLQELEVLSKIRHPHLLLLLGACPDHG--CL 526 (810)
Q Consensus 457 ~f~~~~~iG~G~~g~Vyk~~~~-------~~~vAvK~l~~~~-~~~~~~f~~Ev~iL~~l~Hpniv~l~g~~~~~~--~l 526 (810)
++....+||+|+||.||+|.+. +..||||+++... ....+.|.+|+.+|++++|||||+++|+|.+.. +|
T Consensus 27 ~~~~~~~lG~G~fG~Vykg~~~~~~~~~~~~~VAvK~l~~~~~~~~~~~f~~E~~il~~l~HpNIV~l~g~~~~~~~~~l 106 (308)
T 4gt4_A 27 AVRFMEELGEDRFGKVYKGHLFGPAPGEQTQAVAIKTLKDKAEGPLREEFRHEAMLRARLQHPNVVCLLGVVTKDQPLSM 106 (308)
T ss_dssp GEEEEEEEEECSSCEEEEEEEC-------CEEEEEEECCC-CCC-CHHHHHHHHHHHHHCCCTTBCCEEEEECSSSSCEE
T ss_pred HCEEEEEECCCCCCEEEEEEECCCCCCCCCEEEEEEEECCCCCHHHHHHHHHHHHHHHHCCCCCCCCCCEEEEECCEEEE
T ss_conf 88586691358884899999857765888869999998801496899999999999985899898773649988998899
Q ss_pred EEEECCCCCHHHHHHHCCC-------------CCCCCHHHHHHHHHHHHHHHHHHHHCCCCCEEECCCCCCCEEECCCCC
Q ss_conf 9995248997788741299-------------999998999999999999999976159988881579997568548971
Q 003576 527 VYEYMENGSLEDRLYRKNN-------------TPPIPWFERYRIAWEVASALAFLHNTKPKPIIHRDMKPGNILLDHNLV 593 (810)
Q Consensus 527 V~Ey~~~gsL~~~l~~~~~-------------~~~l~~~~~~~i~~~ia~aL~~LH~~~~~~iiHrDLKp~NILl~~~~~ 593 (810)
|||||++|+|.++|..... ...++|..++.|+.||+.||.|||+.+ ||||||||+|||++.++.
T Consensus 107 V~Ey~~~G~L~~~L~~~~~~~~~~~~~~~~~~~~~l~~~~~~~i~~qia~gl~yLH~~~---iiHRDLK~~NILl~~~~~ 183 (308)
T 4gt4_A 107 IFSYCSHGDLHEFLVMRSPHSDVGSTDDDRTVKSALEPPDFVHLVAQIAAGMEYLSSHH---VVHKDLATRNVLVYDKLN 183 (308)
T ss_dssp EEECCSSCBHHHHHHTTCSSCCCC-----CCEECCCCHHHHHHHHHHHHHHHHHHHHTT---CCCSCCSGGGEEECGGGC
T ss_pred EEECCCCCCHHHHHHHHCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHCC---CCCCCCCCCCEEECCCCC
T ss_conf 99818999499999862765433332211112468999999999999999999998689---977873623068879997
Q ss_pred EEEEEECCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHH-CCCCCCCCCHHHHHHC
Q ss_conf 389220241004899986444433567756755568632236988973223559999999983-7997433200244310
Q 003576 594 SKIGDVGLSTMLNSDPSFVSTTYKNTGPVGTLCYIDPEYQRTGLISPKSDVYAYGMVILQLLT-AKPAIAITHKVETAID 672 (810)
Q Consensus 594 ~kI~DFGla~~~~~~~~~~~~~~~~~~~~gt~~Y~aPE~~~~~~~s~~sDi~SlGvil~ellt-G~~Pf~~~~~~~~~~~ 672 (810)
+||+|||+|+.+..... ....+..+||+.|||||++.++.|+.++|||||||+||||+| |++||......+
T Consensus 184 ~Ki~DFGlar~~~~~~~----~~~~~~~~gt~~ymAPE~l~~~~~s~ksDVwSfGvvl~El~t~g~~Pf~~~~~~~---- 255 (308)
T 4gt4_A 184 VKISDLGLFREVYAADY----YKLLGNSLLPIRWMAPEAIMYGKFSIDSDIWSYGVVLWEVFSYGLQPYCGYSNQD---- 255 (308)
T ss_dssp EEECCSCCBCGGGGGGC----BCSSSSSCBCGGGCCHHHHHHCCCCHHHHHHHHHHHHHHHHTTTCCTTTTCCHHH----
T ss_pred EEECCCCCCEECCCCCC----EEEECCCCCCCCCCCHHHHHCCCCCCCCHHHHHHHHHHHHHHCCCCCCCCCCHHH----
T ss_conf 89887602023367774----0473451257765698998279999630001579999999968999999989999----
Q ss_pred CCHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHCCCCCCCCCCCHHHHHHHH
Q ss_conf 0036787432079999467899999999975002899996110013589878
Q 003576 673 EDNLAEILDAQAGDWPIKETKELAALGLSCAELRRKDRPDLKNQVLPVLERL 724 (810)
Q Consensus 673 ~~~l~~~ld~~~~~~p~~~~~~l~~li~~Cl~~~p~~RPs~~~~v~~~L~~l 724 (810)
.+..+........|..++..+.+|+.+||+.+|.+||++. +|+..|+.+
T Consensus 256 --~~~~i~~~~~~~~p~~~~~~~~~li~~C~~~dP~~RPs~~-ei~~~L~a~ 304 (308)
T 4gt4_A 256 --VVEMIRNRQVLPCPDDCPAWVYALMIECWNEFPSRRPRFK-DIHSRLRAW 304 (308)
T ss_dssp --HHHHHHTTCCCCCCTTCCHHHHHHHHHHTCSSGGGSCCHH-HHHHHHHTS
T ss_pred --HHHHHHCCCCCCCCCCCHHHHHHHHHHHCCCCHHHCCCHH-HHHHHHHHC
T ss_conf --9999981998999620369999999997587965792999-999999853
No 5
>4b9d_A Serine/threonine-protein kinase NEK1; transferase, inhibitor; HET: CK7; 1.90A {Homo sapiens} PDB: 4apc_A*
Probab=1.00 E-value=1 Score=396.84 Aligned_cols=246 Identities=23% Similarity=0.355 Sum_probs=207.1
Q ss_pred CCCCCCEEECCCCCEEEEEEEEC--CEEEEEEEECCCC--CCCHHHHHHHHHHHHHCCCCCEEEEECEECCCC--EEEEE
Q ss_conf 17644402236770899999989--9389999970568--400598999999998158995665603005987--27999
Q 003576 456 LSFSENLRIGMGGYGTVYKGTFH--HTFAAVKVLQSKG--NIQNKQFLQELEVLSKIRHPHLLLLLGACPDHG--CLVYE 529 (810)
Q Consensus 456 ~~f~~~~~iG~G~~g~Vyk~~~~--~~~vAvK~l~~~~--~~~~~~f~~Ev~iL~~l~Hpniv~l~g~~~~~~--~lV~E 529 (810)
++|....+||+|+||.||+|.+. +..||||++.... ....+.|.+|+.+|++++|||||++++++.+.. |||||
T Consensus 24 e~Y~~~~~lG~G~fg~V~~a~~~~~~~~vAiK~i~~~~~~~~~~~~~~~E~~il~~l~HpnIV~~~~~~~~~~~~yiVmE 103 (350)
T 4b9d_A 24 EKYVRLQKIGEGSFGKAILVKSTEDGRQYVIKEINISRMSSKEREESRREVAVLANMKHPNIVQYRESFEENGSLYIVMD 103 (350)
T ss_dssp CCEEEEEEC------CEEEEEETTTCCEEEEEEEECTTSCHHHHHHHHHHHHHHHHCCCTTBCCEEEEEEETTEEEEEEE
T ss_pred CCEEEEEEEECCCCEEEEEEEECCCCCEEEEEEEEHHHCCHHHHHHHHHHHHHHHHCCCCCCCCEEEEEEECCEEEEEEE
T ss_conf 25588479702779399999988999899999986587897999999999999987799898919999998999999994
Q ss_pred ECCCCCHHHHHHHCCCCCCCCHHHHHHHHHHHHHHHHHHHHCCCCCEEECCCCCCCEEECCCCCEEEEEECCCCCCCCCC
Q ss_conf 52489977887412999999989999999999999999761599888815799975685489713892202410048999
Q 003576 530 YMENGSLEDRLYRKNNTPPIPWFERYRIAWEVASALAFLHNTKPKPIIHRDMKPGNILLDHNLVSKIGDVGLSTMLNSDP 609 (810)
Q Consensus 530 y~~~gsL~~~l~~~~~~~~l~~~~~~~i~~~ia~aL~~LH~~~~~~iiHrDLKp~NILl~~~~~~kI~DFGla~~~~~~~ 609 (810)
||+||+|.++|...+. ..+++..+..|+.||+.||.|||+.+ |+||||||+|||++.++.+||+|||+|+.+....
T Consensus 104 y~~gg~L~~~i~~~~~-~~~~e~~~~~~~~qi~~aL~ylH~~~---IiHRDlKp~NILl~~~g~vKl~DFGla~~~~~~~ 179 (350)
T 4b9d_A 104 YCEGGDLFKRINAQKG-VLFQEDQILDWFVQICLALKHVHDRK---ILHRDIKSQNIFLTKDGTVQLGDFGIARVLNSTV 179 (350)
T ss_dssp CCTTCBHHHHHHHTTT-CCCCHHHHHHHHHHHHHHHHHHHHTT---CEETTCCGGGEEECTTCCEEECSTTEESCCCHHH
T ss_pred CCCCCCHHHHHHHCCC-CCCCHHHHHHHHHHHHHHHHHHHHCC---EEECCCCHHHEEECCCCCEEECCCCCCEEECCCC
T ss_conf 8899839999997389-99978999999999999999999899---1513597899798789998976465214406885
Q ss_pred CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHCCCCCCCCCHHHHHHCCCHHHHHHHHHCCCCCH
Q ss_conf 86444433567756755568632236988973223559999999983799743320024431000367874320799994
Q 003576 610 SFVSTTYKNTGPVGTLCYIDPEYQRTGLISPKSDVYAYGMVILQLLTAKPAIAITHKVETAIDEDNLAEILDAQAGDWPI 689 (810)
Q Consensus 610 ~~~~~~~~~~~~~gt~~Y~aPE~~~~~~~s~~sDi~SlGvil~elltG~~Pf~~~~~~~~~~~~~~l~~~ld~~~~~~p~ 689 (810)
...+..+||+.|||||++.+..|+.++|||||||+||+|+||++||......+ .+..++.......+.
T Consensus 180 ------~~~~~~~GT~~YmAPE~l~~~~y~~~~DiwSlGvilyemltG~~PF~~~~~~~------~~~~i~~~~~~~~~~ 247 (350)
T 4b9d_A 180 ------ELARACIGTPYYLSPEICENKPYNNKSDIWALGCVLYELCTLKHAFEAGSMKN------LVLKIISGSFPPVSL 247 (350)
T ss_dssp ------HHHHHHHSCCTTCCHHHHTTCCCCHHHHHHHHHHHHHHHHHSSCSCCCSSHHH------HHHHHHHTCCCCCCT
T ss_pred ------CCCCCCCCCCCCCCHHHHCCCCCCCHHHHHHHHHHHHHHHHCCCCCCCCCHHH------HHHHHHCCCCCCCCC
T ss_conf ------41014578836039999879998959999999999999997879989969999------999998089999975
Q ss_pred HHHHHHHHHHHHHHHHCCCCCCCCCCCHH
Q ss_conf 67899999999975002899996110013
Q 003576 690 KETKELAALGLSCAELRRKDRPDLKNQVL 718 (810)
Q Consensus 690 ~~~~~l~~li~~Cl~~~p~~RPs~~~~v~ 718 (810)
..+.++.+|+.+||+.||.+||++.+ ++
T Consensus 248 ~~s~~~~~li~~~L~~dP~~R~s~~e-~l 275 (350)
T 4b9d_A 248 HYSYDLRSLVSQLFKRNPRDRPSVNS-IL 275 (350)
T ss_dssp TSCHHHHHHHHHHTCSSGGGSCCHHH-HH
T ss_pred CCCHHHHHHHHHHCCCCHHHCCCHHH-HH
T ss_conf 57999999999985589667908999-96
No 6
>4ase_A Vascular endothelial growth factor receptor 2; transferase, angiogenesis, signaling protein, phosphorylatio receptor, inhibitor; HET: AV9; 1.83A {Homo sapiens} PDB: 4agd_A* 4asd_A* 4agc_A*
Probab=1.00 E-value=1 Score=394.00 Aligned_cols=267 Identities=24% Similarity=0.353 Sum_probs=216.1
Q ss_pred CHHHHHHHHCCCCCCEEECCCCCEEEEEEEECC-------EEEEEEEECCCCC-CCHHHHHHHHHHHHHCCC-CCEEEEE
Q ss_conf 988999862176444022367708999999899-------3899999705684-005989999999981589-9566560
Q 003576 447 TWEEIESATLSFSENLRIGMGGYGTVYKGTFHH-------TFAAVKVLQSKGN-IQNKQFLQELEVLSKIRH-PHLLLLL 517 (810)
Q Consensus 447 ~~~ei~~~~~~f~~~~~iG~G~~g~Vyk~~~~~-------~~vAvK~l~~~~~-~~~~~f~~Ev~iL~~l~H-pniv~l~ 517 (810)
...+++...++|....+||+|+||.||+|.+.+ ..||||++..... .....|.+|+.+|.+++| ||||+++
T Consensus 55 ~~~~wEi~~~~~~l~~~LG~G~fG~Vy~a~~~~~~~~~~~k~VAvK~l~~~~~~~~~~~~~~E~~il~~l~hhpnIV~l~ 134 (353)
T 4ase_A 55 DASKWEFPRDRLKLGKPLGRGAFGQVIEADAFGIDKTATCRTVAVKMLKEGATHSEHRALMSELKILIHIGHHLNVVNLL 134 (353)
T ss_dssp CHHHHBCCGGGEEEEEEEEECSSEEEEEEEEETSSSTTCEEEEEEEEECTTCCHHHHHHHHHHHHHHHHHCCCTTBCCEE
T ss_pred CCCCCEECHHHEEEEEEEECCCCEEEEEEEECCCCCCCCCEEEEEEEECCCCCHHHHHHHHHHHHHHHHCCCCCCEEEEE
T ss_conf 88551705799598209821789599999986888544775999999762358689999999999999757998487788
Q ss_pred CEECCC---CEEEEEECCCCCHHHHHHHCCC-------------CCCCCHHHHHHHHHHHHHHHHHHHHCCCCCEEECCC
Q ss_conf 300598---7279995248997788741299-------------999998999999999999999976159988881579
Q 003576 518 GACPDH---GCLVYEYMENGSLEDRLYRKNN-------------TPPIPWFERYRIAWEVASALAFLHNTKPKPIIHRDM 581 (810)
Q Consensus 518 g~~~~~---~~lV~Ey~~~gsL~~~l~~~~~-------------~~~l~~~~~~~i~~~ia~aL~~LH~~~~~~iiHrDL 581 (810)
|+|.+. .+||||||++|+|.++|..... ...++|..+..|+.||+.||.|||+.+ ||||||
T Consensus 135 g~~~~~~~~~~iV~Ey~~~G~L~~~L~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~qia~gl~yLH~~~---iiHRDL 211 (353)
T 4ase_A 135 GACTKPGGPLMVIVEFCKFGNLSTYLRSKRNEFVPYKVAPEDLYKDFLTLEHLICYSFQVAKGMEFLASRK---CIHRDL 211 (353)
T ss_dssp EEECCTTSCCEEEEECCTTEEHHHHHHHTGGGBCCC-------CTTCBCHHHHHHHHHHHHHHHHHHHHTT---CCCSCC
T ss_pred EEEEECCCEEEEEEECCCCCCHHHHHHHCCCCCCCCCCCCHHHCCCCCCHHHHHHHHHHHHHHHHHHHHCC---EECCCC
T ss_conf 99994697799999838989799999743566654333410110356899999999999999987676278---435746
Q ss_pred CCCCEEECCCCCEEEEEECCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHH-CCCC
Q ss_conf 997568548971389220241004899986444433567756755568632236988973223559999999983-7997
Q 003576 582 KPGNILLDHNLVSKIGDVGLSTMLNSDPSFVSTTYKNTGPVGTLCYIDPEYQRTGLISPKSDVYAYGMVILQLLT-AKPA 660 (810)
Q Consensus 582 Kp~NILl~~~~~~kI~DFGla~~~~~~~~~~~~~~~~~~~~gt~~Y~aPE~~~~~~~s~~sDi~SlGvil~ellt-G~~P 660 (810)
||+|||++.++.+||+|||+|+.+....... .....+||+.|||||++.++.|+.++|||||||+||||+| |++|
T Consensus 212 K~~NILl~~~~~vKi~DFGlar~~~~~~~~~----~~~~~~gt~~ymAPE~l~~~~y~~ksDVwS~Gv~l~El~t~G~~P 287 (353)
T 4ase_A 212 AARNILLSEKNVVKICDFGLARDIYKDPDYV----RKGDARLPLKWMAPETIFDRVYTIQSDVWSFGVLLWEIFSLGASP 287 (353)
T ss_dssp SGGGEEECGGGCEEECCCGGGSCTTTCTTSE----EETTEEECGGGCCHHHHHHCCCCHHHHHHHHHHHHHHHTTTSCCS
T ss_pred CCCCEEECCCCCEEECCCHHHHHCCCCCCCE----EECCCCCCCCCCCHHHHHCCCCCCCCCEEEHHHHHHHHHHCCCCC
T ss_conf 7211305799978979654322245688720----325401466656989994699997553740689999998189999
Q ss_pred CCCCCHHHHHHCCCHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHCCCCCCCCCCCHHHHHHHHHH
Q ss_conf 433200244310003678743207999946789999999997500289999611001358987897
Q 003576 661 IAITHKVETAIDEDNLAEILDAQAGDWPIKETKELAALGLSCAELRRKDRPDLKNQVLPVLERLKE 726 (810)
Q Consensus 661 f~~~~~~~~~~~~~~l~~~ld~~~~~~p~~~~~~l~~li~~Cl~~~p~~RPs~~~~v~~~L~~l~~ 726 (810)
|......+. ....+.+......|..+++++.+|+.+||+.+|.+||++. +++..|+.+..
T Consensus 288 f~~~~~~~~-----~~~~i~~g~~~~~p~~~~~~~~~li~~c~~~dP~~RPt~~-eil~~L~~llq 347 (353)
T 4ase_A 288 YPGVKIDEE-----FCRRLKEGTRMRAPDYTTPEMYQTMLDCWHGEPSQRPTFS-ELVEHLGNLLQ 347 (353)
T ss_dssp STTCCCSHH-----HHHHHHHTCCCCCCTTCCHHHHHHHHHHTCSSGGGSCCHH-HHHHHHHHHHH
T ss_pred CCCCCHHHH-----HHHHHHCCCCCCCCCCCCHHHHHHHHHHCCCCHHHCCCHH-HHHHHHHHHHH
T ss_conf 999898999-----9999973898888865789999999997686966793999-99999999998
No 7
>4fie_A Serine/threonine-protein kinase PAK 4; kinase domain, protein ATP binding, phosphorylation, transferase; HET: SEP ANP; 3.11A {Homo sapiens}
Probab=1.00 E-value=1 Score=392.60 Aligned_cols=241 Identities=20% Similarity=0.315 Sum_probs=203.6
Q ss_pred CCCCCCEEECCCCCEEEEEEEEC--CEEEEEEEECCCCCCCHHHHHHHHHHHHHCCCCCEEEEECEECCCC--EEEEEEC
Q ss_conf 17644402236770899999989--9389999970568400598999999998158995665603005987--2799952
Q 003576 456 LSFSENLRIGMGGYGTVYKGTFH--HTFAAVKVLQSKGNIQNKQFLQELEVLSKIRHPHLLLLLGACPDHG--CLVYEYM 531 (810)
Q Consensus 456 ~~f~~~~~iG~G~~g~Vyk~~~~--~~~vAvK~l~~~~~~~~~~f~~Ev~iL~~l~Hpniv~l~g~~~~~~--~lV~Ey~ 531 (810)
..|....+||+|+||.||+|.+. +..||||++........+.+.+|+.+|+.++|||||+++++|.+.. |||||||
T Consensus 151 ~~y~~~~~iG~G~fG~V~~a~~~~tg~~vAiK~i~~~~~~~~~~~~~Ei~il~~l~HpnIV~l~~~~~~~~~~~iVmEy~ 230 (423)
T 4fie_A 151 SYLDNFIKIGEGSTGIVCIATVRSSGKLVAVKKMDLRKQQRRELLFNEVVIMRDYQHENVVEMYNSYLVGDELWVVMEFL 230 (423)
T ss_dssp GTEEEEEEEEECSSCEEEEEEETTTCCEEEEEEEESTTCSSGGGHHHHHHHHHHCCCTTBCCEEEEEEETTEEEEEEECC
T ss_pred HHCEEEEEECCCCCCEEEEEEECCCCCEEEEEEEECCCHHHHHHHHHHHHHHHHCCCCCCCCEEEEEEECCEEEEEEECC
T ss_conf 84386169624818489999999999899999986255468999999999998579989871689999899999999698
Q ss_pred CCCCHHHHHHHCCCCCCCCHHHHHHHHHHHHHHHHHHHHCCCCCEEECCCCCCCEEECCCCCEEEEEECCCCCCCCCCCC
Q ss_conf 48997788741299999998999999999999999976159988881579997568548971389220241004899986
Q 003576 532 ENGSLEDRLYRKNNTPPIPWFERYRIAWEVASALAFLHNTKPKPIIHRDMKPGNILLDHNLVSKIGDVGLSTMLNSDPSF 611 (810)
Q Consensus 532 ~~gsL~~~l~~~~~~~~l~~~~~~~i~~~ia~aL~~LH~~~~~~iiHrDLKp~NILl~~~~~~kI~DFGla~~~~~~~~~ 611 (810)
+||+|.+++... .+++..+..|+.||+.||.|||+.+ ||||||||+||||+.++.+||+|||+|+.+.....
T Consensus 231 ~gG~L~~~i~~~----~l~e~~~~~~~~qil~aL~ylH~~~---IiHRDiKp~NILl~~~g~vKl~DFGla~~~~~~~~- 302 (423)
T 4fie_A 231 EGGALTDIVTHT----RMNEEQIAAVCLAVLQALSVLHAQG---VIHRDIKSDSILLTHDGRVKLSDFGFCAQVSKEVP- 302 (423)
T ss_dssp TTEEHHHHHHHS----CCCHHHHHHHHHHHHHHHHHHHHTT---EECCCCSTTTEEECTTCCEEECCCTTCEECCSSCC-
T ss_pred CCCCHHHHHHCC----CCCHHHHHHHHHHHHHHHHHHHHCC---EECCCCCHHHEEECCCCCEEEECCCCCEECCCCCC-
T ss_conf 998289887616----9899999999999999999999889---04465787778985899989803726547778876-
Q ss_pred CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHCCCCCCCCCHHHHHHCCCHHHHHHHHHC--CCCCH
Q ss_conf 4444335677567555686322369889732235599999999837997433200244310003678743207--99994
Q 003576 612 VSTTYKNTGPVGTLCYIDPEYQRTGLISPKSDVYAYGMVILQLLTAKPAIAITHKVETAIDEDNLAEILDAQA--GDWPI 689 (810)
Q Consensus 612 ~~~~~~~~~~~gt~~Y~aPE~~~~~~~s~~sDi~SlGvil~elltG~~Pf~~~~~~~~~~~~~~l~~~ld~~~--~~~p~ 689 (810)
..+..+||+.|||||++.+..|+.++|||||||++|||++|++||......+. +..+..... ...+.
T Consensus 303 -----~~~~~~GTp~YmAPEvl~~~~y~~~~DiWSlGvilyeml~G~~PF~~~~~~~~------~~~i~~~~~~~~~~~~ 371 (423)
T 4fie_A 303 -----RRKSLVGTPYWMAPELISRLPYGPEVDIWSLGIMVIEMVDGEPPYFNEPPLKA------MKMIRDNLPPRLKNLH 371 (423)
T ss_dssp -----CBCCCEECTTTCCHHHHTTCCBCTHHHHHHHHHHHHHHHHSSCTTTTSCHHHH------HHHHHHSCCCCCSCTT
T ss_pred -----CCCCCCCCCCCCCHHHHCCCCCCCHHHHHHHHHHHHHHHHCCCCCCCCCHHHH------HHHHHCCCCCCCCCCC
T ss_conf -----43466647472799997799999689999999999999978799898699999------9999727998876501
Q ss_pred HHHHHHHHHHHHHHHHCCCCCCCCCC
Q ss_conf 67899999999975002899996110
Q 003576 690 KETKELAALGLSCAELRRKDRPDLKN 715 (810)
Q Consensus 690 ~~~~~l~~li~~Cl~~~p~~RPs~~~ 715 (810)
..+..+.+|+.+||..||.+||++.+
T Consensus 372 ~~s~~~~dli~~~L~~dP~~R~ta~e 397 (423)
T 4fie_A 372 KVSPSLKGFLDRLLVRDPAQRATAAE 397 (423)
T ss_dssp SSCHHHHHHHHHHSCSSTTTSCCHHH
T ss_pred CCCHHHHHHHHHHCCCCHHHCCCHHH
T ss_conf 29999999999986789568909999
No 8
>4fih_A Serine/threonine-protein kinase PAK 4; kinase domain, protein ATP binding, phosphorylation, transferase; HET: SEP; 1.97A {Homo sapiens} PDB: 4fig_A* 4fif_A* 4fii_A* 4fij_A*
Probab=1.00 E-value=1 Score=391.72 Aligned_cols=241 Identities=20% Similarity=0.318 Sum_probs=203.1
Q ss_pred CCCCCCEEECCCCCEEEEEEEEC--CEEEEEEEECCCCCCCHHHHHHHHHHHHHCCCCCEEEEECEECCCC--EEEEEEC
Q ss_conf 17644402236770899999989--9389999970568400598999999998158995665603005987--2799952
Q 003576 456 LSFSENLRIGMGGYGTVYKGTFH--HTFAAVKVLQSKGNIQNKQFLQELEVLSKIRHPHLLLLLGACPDHG--CLVYEYM 531 (810)
Q Consensus 456 ~~f~~~~~iG~G~~g~Vyk~~~~--~~~vAvK~l~~~~~~~~~~f~~Ev~iL~~l~Hpniv~l~g~~~~~~--~lV~Ey~ 531 (810)
..|....+||+|+||.||+|.+. +..||||++........+.+.+|+.+|++++|||||+++++|.+.. |||||||
T Consensus 74 ~~y~~~~~iG~G~fG~V~~a~~~~tg~~vAiK~i~~~~~~~~~~~~~Ei~il~~l~HpnIV~l~~~~~~~~~~~ivmEy~ 153 (346)
T 4fih_A 74 SYLDNFIKIGEGSTGIVCIATVRSSGKLVAVKKMDLRKQQRRELLFNEVVIMRDYQHENVVEMYNSYLVGDELWVVMEFL 153 (346)
T ss_dssp GTEEEEEEEEECSSCEEEEEEETTTCCEEEEEEEEGGGCSSGGGGHHHHHHHHHCCCTTBCCEEEEEEETTEEEEEECCC
T ss_pred HHCEEEEEEECCCCEEEEEEEECCCCCEEEEEEEECCCHHHHHHHHHHHHHHHHCCCCCCCCEEEEEEECCEEEEEEECC
T ss_conf 75387079602728299999998999899999985276568999999999998679989991999999899999999698
Q ss_pred CCCCHHHHHHHCCCCCCCCHHHHHHHHHHHHHHHHHHHHCCCCCEEECCCCCCCEEECCCCCEEEEEECCCCCCCCCCCC
Q ss_conf 48997788741299999998999999999999999976159988881579997568548971389220241004899986
Q 003576 532 ENGSLEDRLYRKNNTPPIPWFERYRIAWEVASALAFLHNTKPKPIIHRDMKPGNILLDHNLVSKIGDVGLSTMLNSDPSF 611 (810)
Q Consensus 532 ~~gsL~~~l~~~~~~~~l~~~~~~~i~~~ia~aL~~LH~~~~~~iiHrDLKp~NILl~~~~~~kI~DFGla~~~~~~~~~ 611 (810)
+||+|.+++... .+++..+..|+.||+.||.|||+.+ |+||||||+|||++.++.+||+|||+|+.+.....
T Consensus 154 ~gg~L~~~l~~~----~l~e~~~~~~~~qi~~aL~ylH~~~---IiHRDlKp~NILl~~~g~vKl~DFGla~~~~~~~~- 225 (346)
T 4fih_A 154 EGGALTDIVTHT----RMNEEQIAAVCLAVLQALSVLHAQG---VIHRDIKSDSILLTHDGRVKLSDFGFCAQVSKEVP- 225 (346)
T ss_dssp TTEEHHHHHHHS----CCCHHHHHHHHHHHHHHHHHHHHTT---EECCCCSGGGEEECTTCCEEECCCTTCEECCSSSC-
T ss_pred CCCCHHHHHHCC----CCCHHHHHHHHHHHHHHHHHHHHCC---CCCCCCCHHHEEECCCCCEEEECCCCCEECCCCCC-
T ss_conf 998089998718----9899999999999999999999888---35562788997887999889902757536678877-
Q ss_pred CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHCCCCCCCCCHHHHHHCCCHHHHHHHHHCC--CCCH
Q ss_conf 44443356775675556863223698897322355999999998379974332002443100036787432079--9994
Q 003576 612 VSTTYKNTGPVGTLCYIDPEYQRTGLISPKSDVYAYGMVILQLLTAKPAIAITHKVETAIDEDNLAEILDAQAG--DWPI 689 (810)
Q Consensus 612 ~~~~~~~~~~~gt~~Y~aPE~~~~~~~s~~sDi~SlGvil~elltG~~Pf~~~~~~~~~~~~~~l~~~ld~~~~--~~p~ 689 (810)
..+..+||+.|||||++.+..|+.++|||||||++|||+||++||......+. +..+.+.... ..+.
T Consensus 226 -----~~~~~~GTp~YmAPEvl~~~~y~~~~DiWSlGvilyeml~G~~PF~~~~~~~~------~~~i~~~~~~~~~~~~ 294 (346)
T 4fih_A 226 -----RRKSLVGTPYWMAPELISRLPYGPEVDIWSLGIMVIEMVDGEPPYFNEPPLKA------MKMIRDNLPPRLKNLH 294 (346)
T ss_dssp -----CBCCCCSCGGGCCHHHHTTCCBCTHHHHHHHHHHHHHHHHSSCTTTTSCHHHH------HHHHHHSSCCCCSCGG
T ss_pred -----CCCCCCCCCCCCCHHHHCCCCCCCHHHHHHHHHHHHHHHHCCCCCCCCCHHHH------HHHHHCCCCCCCCCCC
T ss_conf -----53465627582799997799999689999999999999978799898599999------9999717999887502
Q ss_pred HHHHHHHHHHHHHHHHCCCCCCCCCC
Q ss_conf 67899999999975002899996110
Q 003576 690 KETKELAALGLSCAELRRKDRPDLKN 715 (810)
Q Consensus 690 ~~~~~l~~li~~Cl~~~p~~RPs~~~ 715 (810)
..+.++.+|+.+||..||.+||++.+
T Consensus 295 ~~s~~~~dli~~~L~~dP~~R~ta~e 320 (346)
T 4fih_A 295 KVSPSLKGFLDRLLVRDPAQRATAAE 320 (346)
T ss_dssp GSCHHHHHHHHHHSCSSTTTSCCHHH
T ss_pred CCCHHHHHHHHHHCCCCHHHCCCHHH
T ss_conf 29999999999986799568909999
No 9
>4g3f_A NF-kappa-beta-inducing kinase; non-RD kinase, protein serine/threonine kinase, S based drug design, MAP3K14, transferase; HET: 0WB; 1.64A {Mus musculus} PDB: 4g3g_A* 4g3c_A 4dn5_A*
Probab=1.00 E-value=1 Score=388.44 Aligned_cols=253 Identities=18% Similarity=0.184 Sum_probs=205.3
Q ss_pred HCCCCCCEEECCCCCEEEEEEEEC--CEEEEEEEECCCCCCCHHHHHHHHHHHHHCCCCCEEEEECEECCCC--EEEEEE
Q ss_conf 217644402236770899999989--9389999970568400598999999998158995665603005987--279995
Q 003576 455 TLSFSENLRIGMGGYGTVYKGTFH--HTFAAVKVLQSKGNIQNKQFLQELEVLSKIRHPHLLLLLGACPDHG--CLVYEY 530 (810)
Q Consensus 455 ~~~f~~~~~iG~G~~g~Vyk~~~~--~~~vAvK~l~~~~~~~~~~f~~Ev~iL~~l~Hpniv~l~g~~~~~~--~lV~Ey 530 (810)
...|....+||+|+||.||+|++. +..||||+++.... +.+|+.+|.+++|||||+++++|.+.. ||||||
T Consensus 57 ~~~~~~~~~lG~G~fG~Vy~a~~~~~g~~vAiK~i~~~~~-----~~~E~~il~~l~HpnIV~l~~~~~~~~~~~ivmEy 131 (336)
T 4g3f_A 57 VHWMTHQPRVGRGSFGEVHRMKDKQTGFQCAVKKVRLEVF-----RVEELVACAGLSSPRIVPLYGAVREGPWVNIFMEL 131 (336)
T ss_dssp TTEEEEEEEEEEETTEEEEEEEETTTCCEEEEEEEETTTC-----CTHHHHTTTTCCCTTBCCEEEEEEETTEEEEEECC
T ss_pred HHHEEECCEECCCCCEEEEEEEECCCCCEEEEEEECHHHH-----HHHHHHHHHHCCCCCCCCEEEEEEECCEEEEEEEC
T ss_conf 3351768685138780999999889998999999788886-----99999999857998999399999989999999966
Q ss_pred CCCCCHHHHHHHCCCCCCCCHHHHHHHHHHHHHHHHHHHHCCCCCEEECCCCCCCEEECCCC-CEEEEEECCCCCCCCCC
Q ss_conf 24899778874129999999899999999999999997615998888157999756854897-13892202410048999
Q 003576 531 MENGSLEDRLYRKNNTPPIPWFERYRIAWEVASALAFLHNTKPKPIIHRDMKPGNILLDHNL-VSKIGDVGLSTMLNSDP 609 (810)
Q Consensus 531 ~~~gsL~~~l~~~~~~~~l~~~~~~~i~~~ia~aL~~LH~~~~~~iiHrDLKp~NILl~~~~-~~kI~DFGla~~~~~~~ 609 (810)
|+||+|.++|...+ .+++..+..|+.|++.||.|||+.+ |+||||||+|||++.++ .+||+|||+|+.+....
T Consensus 132 ~~gg~L~~~l~~~~---~l~e~~~~~~~~qi~~aL~ylH~~~---IiHRDlKp~NILl~~~g~~vKl~DFGla~~~~~~~ 205 (336)
T 4g3f_A 132 LEGGSLGQLIKQMG---CLPEDRALYYLGQALEGLEYLHTRR---ILHGDVKADNVLLSSDGSRAALCDFGHALCLQPDG 205 (336)
T ss_dssp CTTCBHHHHHHHHS---SCCHHHHHHHHHHHHHHHHHHHTTT---EECSCCCGGGEEECTTSCCEEECCCTTCEEC----
T ss_pred CCCCCHHHHHHHCC---CCCHHHHHHHHHHHHHHHHHHHHCC---CEECCCCHHHEEEECCCCEEEEEECCCCEECCCCC
T ss_conf 59986999998769---9999999999999999999999889---04261677887995899979996278776856787
Q ss_pred CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHCCCCCCCCCHHHHHHCCCHHHHHHHHH--CCCC
Q ss_conf 86444433567756755568632236988973223559999999983799743320024431000367874320--7999
Q 003576 610 SFVSTTYKNTGPVGTLCYIDPEYQRTGLISPKSDVYAYGMVILQLLTAKPAIAITHKVETAIDEDNLAEILDAQ--AGDW 687 (810)
Q Consensus 610 ~~~~~~~~~~~~~gt~~Y~aPE~~~~~~~s~~sDi~SlGvil~elltG~~Pf~~~~~~~~~~~~~~l~~~ld~~--~~~~ 687 (810)
.. .........+||+.|||||++.+..|+.++|||||||++|||+||++||....... .+..+.... ....
T Consensus 206 ~~-~~~~~~~~~~GT~~YmAPE~~~~~~y~~~~DiwSlGvilyemltG~~Pf~~~~~~~------~~~~i~~~~~~~~~~ 278 (336)
T 4g3f_A 206 LG-KSLLTGDYIPGTETHMAPEVVMGKPCDAKVDIWSSCCMMLHMLNGCHPWTQYFRGP------LCLKIASEPPPIREI 278 (336)
T ss_dssp ---------CCCCCCGGGCCHHHHTTCCCCTHHHHHHHHHHHHHHHHSSCSSTTTCCSC------CHHHHHHSCCGGGGS
T ss_pred CC-CCEECCCCCCCCCCCCCHHHHCCCCCCCHHHHHHHHHHHHHHHHCCCCCCCCCHHH------HHHHHHCCCCCCHHC
T ss_conf 65-40221785455802008999889998908999999999999997869989989999------999998089980025
Q ss_pred CHHHHHHHHHHHHHHHHHCCCCCCCCCCCHHHHHHHHHH
Q ss_conf 946789999999997500289999611001358987897
Q 003576 688 PIKETKELAALGLSCAELRRKDRPDLKNQVLPVLERLKE 726 (810)
Q Consensus 688 p~~~~~~l~~li~~Cl~~~p~~RPs~~~~v~~~L~~l~~ 726 (810)
|...+..+.+|+.+||+.+|.+||++. +++..|.....
T Consensus 279 ~~~~s~~~~~li~~~L~~dP~~R~sa~-el~~~l~~~l~ 316 (336)
T 4g3f_A 279 PPSCAPLTAQAIQEGLRKEPVHRASAM-ELRRKVGKALQ 316 (336)
T ss_dssp CTTSCHHHHHHHHHHTCSSGGGSCCHH-HHHHHHHHHHH
T ss_pred CCCCCHHHHHHHHHHCCCCHHHCCCHH-HHHHHHHHHHH
T ss_conf 866799999999997628976895999-99999999975
No 10
>4aw0_A HPDK1, 3-phosphoinositide-dependent protein kinase 1; transferase, allosteric regulation, allosteric site, phosphorylation, AGC protein kinase; HET: SEP ATP MJF; 1.43A {Homo sapiens} PDB: 3hrc_A* 3hrf_A* 4a06_A* 4a07_A* 3rcj_A* 4aw1_A* 3rwq_A* 3sc1_A* 3qd0_A* 2r7b_A* 3ion_A* 3qcq_A* 3qcs_A* 3qcx_A* 3qcy_A* 3iop_A* 3qd3_A* 3qd4_A* 3h9o_A* 1uu3_A* ...
Probab=1.00 E-value=1 Score=384.91 Aligned_cols=243 Identities=26% Similarity=0.333 Sum_probs=206.1
Q ss_pred CCCCCCEEECCCCCEEEEEEEEC--CEEEEEEEECCCC---CCCHHHHHHHHHHHHHCCCCCEEEEECEECCCC--EEEE
Q ss_conf 17644402236770899999989--9389999970568---400598999999998158995665603005987--2799
Q 003576 456 LSFSENLRIGMGGYGTVYKGTFH--HTFAAVKVLQSKG---NIQNKQFLQELEVLSKIRHPHLLLLLGACPDHG--CLVY 528 (810)
Q Consensus 456 ~~f~~~~~iG~G~~g~Vyk~~~~--~~~vAvK~l~~~~---~~~~~~f~~Ev~iL~~l~Hpniv~l~g~~~~~~--~lV~ 528 (810)
.+|.....||+|+||.||+|... +..||+|++.... ......+.+|+.+|++++|||||++++++.+.. ||||
T Consensus 32 ~dy~i~~~lG~G~fg~V~~a~~~~~~~~~AiK~i~k~~~~~~~~~~~~~~E~~il~~l~HpnIv~l~~~~~~~~~~yivm 111 (311)
T 4aw0_A 32 EDFKFGKILGEGSFSTVVLARELATSREYAIKILEKRHIIKENKVPYVTRERDVMSRLDHPFFVKLYFTFQDDEKLYFGL 111 (311)
T ss_dssp GGEEEEEEEEEETTEEEEEEEETTTCCEEEEEEEEHHHHHHTTCHHHHHHHHHHHTTCCCTTBCCEEEEEECSSEEEEEE
T ss_pred CCCEEEEEEECCCCEEEEEEEECCCCCEEEEEEEEHHHCCCHHHHHHHHHHHHHHHHCCCCCCCEEEEEEEECCEEEEEE
T ss_conf 23689889831648499999999999899999988888779789999999999998679989891999997389899999
Q ss_pred EECCCCCHHHHHHHCCCCCCCCHHHHHHHHHHHHHHHHHHHHCCCCCEEECCCCCCCEEECCCCCEEEEEECCCCCCCCC
Q ss_conf 95248997788741299999998999999999999999976159988881579997568548971389220241004899
Q 003576 529 EYMENGSLEDRLYRKNNTPPIPWFERYRIAWEVASALAFLHNTKPKPIIHRDMKPGNILLDHNLVSKIGDVGLSTMLNSD 608 (810)
Q Consensus 529 Ey~~~gsL~~~l~~~~~~~~l~~~~~~~i~~~ia~aL~~LH~~~~~~iiHrDLKp~NILl~~~~~~kI~DFGla~~~~~~ 608 (810)
|||+||+|.+++.+.+ .+++.....|+.||+.||.|||+.+ |+||||||+|||++.++.+||+|||+|+.+...
T Consensus 112 Ey~~gG~L~~~i~~~~---~l~e~~~~~~~~qi~~al~ylH~~~---IiHRDlKPeNILl~~~g~vKl~DFGla~~~~~~ 185 (311)
T 4aw0_A 112 SYAKNGELLKYIRKIG---SFDETCTRFYTAEIVSALEYLHGKG---IIHRDLKPENILLNEDMHIQITDFGTAKVLSPE 185 (311)
T ss_dssp CCCTTEEHHHHHHHHS---SCCHHHHHHHHHHHHHHHHHHHHTT---EECSCCSGGGEEECTTSCEEECCCTTCEECCTT
T ss_pred ECCCCCCHHHHHHHCC---CCCHHHHHHHHHHHHHHHHHHHHCC---CCCCCCCHHHEEECCCCCEEEEECCCCEECCCC
T ss_conf 6489989999998749---9999999999999999999999887---826878789969858988899876875025778
Q ss_pred CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHCCCCCCCCCHHHHHHCCCHHHHHHHHHCCCCC
Q ss_conf 98644443356775675556863223698897322355999999998379974332002443100036787432079999
Q 003576 609 PSFVSTTYKNTGPVGTLCYIDPEYQRTGLISPKSDVYAYGMVILQLLTAKPAIAITHKVETAIDEDNLAEILDAQAGDWP 688 (810)
Q Consensus 609 ~~~~~~~~~~~~~~gt~~Y~aPE~~~~~~~s~~sDi~SlGvil~elltG~~Pf~~~~~~~~~~~~~~l~~~ld~~~~~~p 688 (810)
... ......+||+.|||||++.+..|+.++|||||||++|+|+||++||...+..+ .+..++. ....+|
T Consensus 186 ~~~----~~~~~~~GTp~YmAPEvl~~~~y~~~~DiWSlGvilyeml~G~~PF~~~~~~~------~~~~i~~-~~~~~p 254 (311)
T 4aw0_A 186 SKQ----ARANSFVGTAQYVSPELLTEKSACKSSDLWALGCIIYQLVAGLPPFRAGNEGL------IFAKIIK-LEYDFP 254 (311)
T ss_dssp TTC----CCBCCCCSCGGGCCHHHHHHSCBCHHHHHHHHHHHHHHHHHSSCSSCCSSHHH------HHHHHHH-TCCCCC
T ss_pred CCC----CCCCCCCCCCCCCCHHHHCCCCCCCHHHHHHHHHHHHHHHHCCCCCCCCCHHH------HHHHHHC-CCCCCC
T ss_conf 776----54367556803079989768999968989989999999974989989979999------9999971-999999
Q ss_pred HHHHHHHHHHHHHHHHHCCCCCCCCCC
Q ss_conf 467899999999975002899996110
Q 003576 689 IKETKELAALGLSCAELRRKDRPDLKN 715 (810)
Q Consensus 689 ~~~~~~l~~li~~Cl~~~p~~RPs~~~ 715 (810)
...++++.+|+.+||..||.+||++.+
T Consensus 255 ~~~s~~~~dli~~lL~~dp~~R~t~~e 281 (311)
T 4aw0_A 255 EKFFPKARDLVEKLLVLDATKRLGCEE 281 (311)
T ss_dssp TTCCHHHHHHHHHHSCSSGGGSTTSGG
T ss_pred CCCCHHHHHHHHHHCCCCHHHCCCHHH
T ss_conf 656999999999976289757809679
Done!