Query 003577
Match_columns 810
No_of_seqs 550 out of 4049
Neff 7.9
Searched_HMMs 46136
Date Fri Mar 29 02:03:48 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/003577.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/003577hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG0372 Serine/threonine speci 100.0 1.1E-79 2.5E-84 599.0 15.7 284 456-763 3-286 (303)
2 KOG0374 Serine/threonine speci 100.0 1.7E-74 3.8E-79 615.9 24.7 295 456-763 9-304 (331)
3 KOG0373 Serine/threonine speci 100.0 3.9E-72 8.4E-77 536.7 15.5 284 457-764 7-291 (306)
4 PTZ00480 serine/threonine-prot 100.0 6.4E-70 1.4E-74 579.2 28.6 294 456-765 11-304 (320)
5 cd07420 MPP_RdgC Drosophila me 100.0 3E-69 6.6E-74 575.1 29.5 285 455-759 6-320 (321)
6 cd07419 MPP_Bsu1_C Arabidopsis 100.0 7.4E-69 1.6E-73 576.7 28.0 303 459-761 1-311 (311)
7 PTZ00244 serine/threonine-prot 100.0 1.4E-68 3.1E-73 566.6 27.3 291 454-760 2-292 (294)
8 cd07415 MPP_PP2A_PP4_PP6 PP2A, 100.0 3.4E-68 7.3E-73 562.8 28.0 283 456-762 2-284 (285)
9 cd07414 MPP_PP1_PPKL PP1, PPKL 100.0 2.8E-68 6.2E-73 565.5 27.4 290 456-761 2-291 (293)
10 PTZ00239 serine/threonine prot 100.0 9.2E-68 2E-72 561.9 28.6 285 456-764 3-288 (303)
11 cd07417 MPP_PP5_C PP5, C-termi 100.0 1.1E-66 2.4E-71 557.5 27.7 291 452-766 12-308 (316)
12 cd07416 MPP_PP2B PP2B, metallo 100.0 7.2E-66 1.6E-70 550.8 29.4 274 478-764 15-299 (305)
13 smart00156 PP2Ac Protein phosp 100.0 1.1E-65 2.4E-70 542.2 27.6 269 479-761 1-269 (271)
14 cd07418 MPP_PP7 PP7, metalloph 100.0 1.7E-63 3.6E-68 537.6 29.5 298 453-760 9-364 (377)
15 KOG0371 Serine/threonine prote 100.0 3E-63 6.5E-68 487.1 12.1 286 456-765 20-305 (319)
16 KOG0375 Serine-threonine phosp 100.0 4.3E-63 9.3E-68 504.2 9.4 263 478-752 60-333 (517)
17 KOG0377 Protein serine/threoni 100.0 2.7E-53 5.8E-58 442.3 13.5 280 456-756 121-426 (631)
18 KOG0376 Serine-threonine phosp 100.0 2.6E-46 5.6E-51 402.3 13.5 273 479-765 183-461 (476)
19 PLN02193 nitrile-specifier pro 100.0 7.5E-34 1.6E-38 325.4 34.1 260 10-297 151-421 (470)
20 KOG4693 Uncharacterized conser 100.0 2.2E-34 4.8E-39 285.0 21.3 249 2-273 46-313 (392)
21 PLN02153 epithiospecifier prot 100.0 7.3E-33 1.6E-37 305.7 33.2 266 7-294 4-292 (341)
22 PLN02193 nitrile-specifier pro 100.0 2.8E-32 6E-37 312.5 33.9 264 2-287 195-469 (470)
23 KOG0379 Kelch repeat-containin 100.0 5.6E-32 1.2E-36 309.3 27.7 266 17-307 53-324 (482)
24 KOG4693 Uncharacterized conser 100.0 3.1E-32 6.8E-37 269.8 20.5 263 11-298 3-288 (392)
25 KOG4152 Host cell transcriptio 100.0 9.7E-33 2.1E-37 293.2 17.9 269 2-287 59-364 (830)
26 PLN02153 epithiospecifier prot 100.0 6.9E-31 1.5E-35 289.9 31.7 265 2-287 52-340 (341)
27 KOG1230 Protein containing rep 100.0 5.1E-31 1.1E-35 275.4 18.4 221 2-229 100-348 (521)
28 cd00144 MPP_PPP_family phospho 100.0 4.6E-31 9.9E-36 274.1 17.8 218 509-747 1-224 (225)
29 PHA02713 hypothetical protein; 100.0 1.8E-29 3.9E-34 294.1 27.6 251 2-295 274-542 (557)
30 KOG4441 Proteins containing BT 100.0 8.6E-29 1.9E-33 287.4 27.8 254 1-295 302-555 (571)
31 KOG0379 Kelch repeat-containin 100.0 1.2E-28 2.7E-33 281.8 26.1 261 2-285 90-356 (482)
32 KOG1230 Protein containing rep 100.0 6.1E-29 1.3E-33 259.9 19.8 253 18-293 60-347 (521)
33 PHA03098 kelch-like protein; P 100.0 3.7E-28 8E-33 284.4 28.4 252 5-295 269-520 (534)
34 TIGR03547 muta_rot_YjhT mutatr 100.0 2.8E-26 6E-31 254.0 29.0 252 2-284 31-344 (346)
35 KOG4152 Host cell transcriptio 99.9 4.4E-27 9.6E-32 250.4 18.4 270 9-306 16-327 (830)
36 TIGR03548 mutarot_permut cycli 99.9 7.5E-26 1.6E-30 248.0 27.6 239 2-273 41-314 (323)
37 PRK14131 N-acetylneuraminic ac 99.9 8.6E-26 1.9E-30 252.4 27.7 253 2-287 52-369 (376)
38 TIGR03548 mutarot_permut cycli 99.9 1.2E-25 2.7E-30 246.3 27.9 245 23-297 2-290 (323)
39 KOG4441 Proteins containing BT 99.9 3.3E-25 7.1E-30 257.5 24.5 247 21-306 272-519 (571)
40 TIGR03547 muta_rot_YjhT mutatr 99.9 3.5E-24 7.5E-29 237.2 28.0 249 20-299 3-311 (346)
41 PHA02790 Kelch-like protein; P 99.9 1.7E-23 3.6E-28 240.8 27.7 212 28-292 264-476 (480)
42 PRK14131 N-acetylneuraminic ac 99.9 5.7E-23 1.2E-27 229.7 27.3 251 19-299 23-333 (376)
43 PHA02713 hypothetical protein; 99.9 4.8E-23 1E-27 240.3 26.6 232 36-304 259-507 (557)
44 PHA03098 kelch-like protein; P 99.9 1.3E-22 2.9E-27 237.6 24.7 206 2-231 313-521 (534)
45 cd07425 MPP_Shelphs Shewanella 99.9 1.4E-22 2.9E-27 207.0 14.7 185 509-732 1-196 (208)
46 PHA02790 Kelch-like protein; P 99.9 5.4E-21 1.2E-25 220.0 25.1 190 2-229 289-478 (480)
47 PRK13625 bis(5'-nucleosyl)-tet 99.9 2E-22 4.4E-27 211.2 10.9 131 507-639 2-146 (245)
48 cd07422 MPP_ApaH Escherichia c 99.8 1.8E-21 3.9E-26 203.3 8.4 160 508-686 1-169 (257)
49 PRK00166 apaH diadenosine tetr 99.8 4.8E-20 1E-24 194.7 17.4 121 507-639 2-127 (275)
50 cd07413 MPP_PA3087 Pseudomonas 99.8 3E-20 6.4E-25 191.8 15.2 123 509-636 2-143 (222)
51 cd07423 MPP_PrpE Bacillus subt 99.8 6.5E-21 1.4E-25 198.9 9.3 129 507-638 2-142 (234)
52 TIGR00668 apaH bis(5'-nucleosy 99.8 1.5E-20 3.3E-25 196.0 10.4 126 507-646 2-133 (279)
53 cd07421 MPP_Rhilphs Rhilph pho 99.8 1.1E-19 2.4E-24 189.3 14.8 82 507-588 3-85 (304)
54 PRK11439 pphA serine/threonine 99.8 9.3E-20 2E-24 187.9 9.7 120 506-636 17-146 (218)
55 PHA02239 putative protein phos 99.8 9E-19 2E-23 181.4 12.5 140 507-669 2-184 (235)
56 cd07424 MPP_PrpA_PrpB PrpA and 99.8 4.7E-19 1E-23 181.5 10.3 122 506-638 1-132 (207)
57 PRK09968 serine/threonine-spec 99.7 3.9E-18 8.4E-23 175.6 9.1 120 506-636 15-144 (218)
58 COG3055 Uncharacterized protei 99.5 2E-13 4.3E-18 142.9 18.8 253 3-287 61-375 (381)
59 KOG2437 Muskelin [Signal trans 99.5 1.6E-15 3.5E-20 162.7 1.4 273 8-286 237-612 (723)
60 KOG2437 Muskelin [Signal trans 99.5 8.4E-15 1.8E-19 157.2 5.4 213 63-287 239-472 (723)
61 COG3055 Uncharacterized protei 99.3 2.4E-10 5.2E-15 120.0 18.8 248 19-298 31-338 (381)
62 PF00149 Metallophos: Calcineu 98.9 4.1E-09 8.8E-14 102.6 9.0 77 507-589 2-84 (200)
63 PLN02772 guanylate kinase 98.8 1.8E-08 3.9E-13 110.2 11.2 92 19-114 19-110 (398)
64 COG0639 ApaH Diadenosine tetra 98.8 6.9E-09 1.5E-13 99.6 6.7 147 584-737 2-155 (155)
65 PF13964 Kelch_6: Kelch motif 98.7 2.6E-08 5.7E-13 77.3 6.3 49 77-131 1-50 (50)
66 PF13964 Kelch_6: Kelch motif 98.7 4.2E-08 9.1E-13 76.2 5.8 50 24-78 1-50 (50)
67 PF13415 Kelch_3: Galactose ox 98.7 4.7E-08 1E-12 75.6 5.8 48 34-86 1-49 (49)
68 PF13415 Kelch_3: Galactose ox 98.7 5.5E-08 1.2E-12 75.2 6.2 46 89-139 2-49 (49)
69 PLN02772 guanylate kinase 98.6 1.4E-07 3.1E-12 103.2 11.1 89 73-167 20-109 (398)
70 PRK09453 phosphodiesterase; Pr 98.6 1.5E-07 3.2E-12 94.5 9.4 68 507-584 2-77 (182)
71 PF12850 Metallophos_2: Calcin 98.6 1.3E-06 2.8E-11 84.8 14.7 60 507-584 2-61 (156)
72 PF13418 Kelch_4: Galactose ox 98.6 5.3E-08 1.2E-12 75.3 3.9 44 77-122 1-45 (49)
73 PF07646 Kelch_2: Kelch motif; 98.5 2.7E-07 5.9E-12 71.3 6.4 48 183-231 1-48 (49)
74 cd00841 MPP_YfcE Escherichia c 98.5 3.8E-07 8.3E-12 88.8 8.9 59 507-583 1-59 (155)
75 PF13854 Kelch_5: Kelch motif 98.4 3.5E-07 7.6E-12 68.2 5.3 39 250-288 2-42 (42)
76 PF13854 Kelch_5: Kelch motif 98.4 3.3E-07 7.1E-12 68.3 5.2 40 21-60 1-41 (42)
77 cd07379 MPP_239FB Homo sapiens 98.4 9.9E-07 2.1E-11 83.9 9.9 118 507-719 1-120 (135)
78 PF07646 Kelch_2: Kelch motif; 98.4 6.5E-07 1.4E-11 69.2 6.1 45 77-124 1-48 (49)
79 PF13418 Kelch_4: Galactose ox 98.4 3.2E-07 7E-12 70.8 4.3 44 24-69 1-45 (49)
80 TIGR00040 yfcE phosphoesterase 98.4 7.1E-06 1.5E-10 80.3 14.9 61 507-582 2-63 (158)
81 cd07397 MPP_DevT Myxococcus xa 98.4 1.9E-06 4.1E-11 89.0 10.4 63 507-585 2-65 (238)
82 cd07388 MPP_Tt1561 Thermus the 98.4 3.6E-06 7.8E-11 86.7 12.5 70 507-583 6-75 (224)
83 PF01344 Kelch_1: Kelch motif; 98.3 1.5E-06 3.2E-11 66.4 5.3 45 24-70 1-45 (47)
84 PF03089 RAG2: Recombination a 98.2 2.5E-05 5.4E-10 80.2 15.0 146 127-288 19-192 (337)
85 cd00838 MPP_superfamily metall 98.2 1.2E-05 2.5E-10 74.7 11.6 67 509-581 1-69 (131)
86 PF01344 Kelch_1: Kelch motif; 98.2 1.9E-06 4.1E-11 65.8 5.0 46 183-231 1-46 (47)
87 PF03089 RAG2: Recombination a 98.2 0.00037 8E-09 71.8 21.3 126 36-165 40-189 (337)
88 cd07394 MPP_Vps29 Homo sapiens 98.1 0.00014 3E-09 72.6 16.1 57 508-582 2-64 (178)
89 smart00612 Kelch Kelch domain. 97.9 1.4E-05 3.1E-10 60.5 4.9 45 91-140 2-46 (47)
90 PF07250 Glyoxal_oxid_N: Glyox 97.9 0.00046 9.9E-09 71.8 17.2 177 28-231 2-208 (243)
91 cd07403 MPP_TTHA0053 Thermus t 97.7 0.00031 6.8E-09 66.2 11.4 56 509-581 1-56 (129)
92 cd07392 MPP_PAE1087 Pyrobaculu 97.7 8.4E-05 1.8E-09 74.4 6.9 65 508-584 1-66 (188)
93 smart00612 Kelch Kelch domain. 97.6 8E-05 1.7E-09 56.3 4.6 47 195-263 1-47 (47)
94 PRK05340 UDP-2,3-diacylglucosa 97.6 0.00021 4.6E-09 75.0 9.2 69 507-583 2-83 (241)
95 KOG0376 Serine-threonine phosp 97.6 1.4E-05 3.1E-10 88.1 -0.0 243 478-737 14-299 (476)
96 TIGR01854 lipid_A_lpxH UDP-2,3 97.6 0.00054 1.2E-08 71.5 11.3 178 508-719 1-201 (231)
97 cd07400 MPP_YydB Bacillus subt 97.5 0.0019 4.1E-08 61.8 13.3 29 691-719 101-129 (144)
98 cd07404 MPP_MS158 Microscilla 97.5 0.00011 2.4E-09 72.4 4.3 67 508-583 1-68 (166)
99 PRK11340 phosphodiesterase Yae 97.4 0.00044 9.6E-09 73.9 7.7 69 507-583 51-125 (271)
100 cd07399 MPP_YvnB Bacillus subt 97.3 0.0096 2.1E-07 61.3 16.9 71 690-761 135-213 (214)
101 cd07385 MPP_YkuE_C Bacillus su 97.3 0.00046 9.9E-09 71.3 6.4 70 507-584 3-77 (223)
102 TIGR03729 acc_ester putative p 97.0 0.0016 3.6E-08 68.2 7.4 68 507-583 1-74 (239)
103 cd07390 MPP_AQ1575 Aquifex aeo 97.0 0.0035 7.5E-08 62.0 8.9 40 541-585 45-84 (168)
104 COG0622 Predicted phosphoester 96.9 0.042 9.1E-07 54.3 16.2 64 507-584 3-66 (172)
105 PRK04036 DNA polymerase II sma 96.8 0.0059 1.3E-07 71.0 10.9 119 506-635 244-388 (504)
106 TIGR01640 F_box_assoc_1 F-box 96.8 0.22 4.8E-06 51.7 21.8 200 2-223 16-230 (230)
107 cd00844 MPP_Dbr1_N Dbr1 RNA la 96.7 0.0032 6.9E-08 66.7 7.1 70 508-583 1-86 (262)
108 cd00840 MPP_Mre11_N Mre11 nucl 96.7 0.0032 6.8E-08 64.9 6.8 74 507-586 1-92 (223)
109 cd07396 MPP_Nbla03831 Homo sap 96.7 0.0045 9.7E-08 66.1 8.1 73 507-585 2-88 (267)
110 PF07250 Glyoxal_oxid_N: Glyox 96.7 0.028 6.2E-07 58.5 13.2 134 4-150 50-189 (243)
111 cd07391 MPP_PF1019 Pyrococcus 96.6 0.0048 1E-07 61.2 6.8 44 541-584 44-89 (172)
112 cd07395 MPP_CSTP1 Homo sapiens 96.5 0.08 1.7E-06 56.2 16.1 59 692-752 195-254 (262)
113 cd07398 MPP_YbbF-LpxH Escheric 96.5 0.0066 1.4E-07 62.4 7.4 27 690-716 176-202 (217)
114 PHA02546 47 endonuclease subun 96.4 0.0069 1.5E-07 67.0 7.3 72 507-584 2-90 (340)
115 cd07402 MPP_GpdQ Enterobacter 96.3 0.013 2.7E-07 61.3 8.4 69 507-583 1-83 (240)
116 cd07386 MPP_DNA_pol_II_small_a 96.1 0.047 1E-06 57.3 11.7 72 509-584 2-95 (243)
117 TIGR00024 SbcD_rel_arch putati 96.1 0.018 3.9E-07 59.7 8.1 40 541-584 61-103 (225)
118 TIGR00619 sbcd exonuclease Sbc 96.1 0.012 2.6E-07 62.2 7.0 72 507-584 2-89 (253)
119 PRK10966 exonuclease subunit S 96.1 0.015 3.2E-07 65.8 7.9 43 541-584 42-88 (407)
120 cd08165 MPP_MPPE1 human MPPE1 96.1 0.0091 2E-07 58.2 5.4 44 541-584 41-90 (156)
121 PRK11148 cyclic 3',5'-adenosin 96.0 0.02 4.3E-07 61.4 8.2 70 507-583 16-98 (275)
122 KOG0918 Selenium-binding prote 95.9 0.0015 3.3E-08 70.3 -1.2 209 539-761 48-262 (476)
123 cd00839 MPP_PAPs purple acid p 95.9 0.052 1.1E-06 58.6 10.7 37 691-727 181-217 (294)
124 cd07393 MPP_DR1119 Deinococcus 95.8 0.023 5.1E-07 59.2 7.4 46 690-737 180-228 (232)
125 cd07383 MPP_Dcr2 Saccharomyces 95.8 0.03 6.5E-07 56.9 8.0 41 541-581 44-87 (199)
126 PRK11138 outer membrane biogen 95.6 4.1 8.8E-05 46.0 25.1 219 2-289 81-315 (394)
127 cd08163 MPP_Cdc1 Saccharomyces 95.4 0.24 5.1E-06 52.5 13.2 24 690-713 203-226 (257)
128 TIGR01640 F_box_assoc_1 F-box 95.2 3.2 6.8E-05 43.0 21.1 164 51-231 14-187 (230)
129 TIGR00583 mre11 DNA repair pro 95.2 0.056 1.2E-06 60.9 8.0 72 507-584 5-124 (405)
130 PRK11138 outer membrane biogen 95.1 4.5 9.7E-05 45.6 23.4 206 29-289 64-277 (394)
131 cd07401 MPP_TMEM62_N Homo sapi 95.0 0.054 1.2E-06 57.4 7.0 26 695-720 190-215 (256)
132 COG2908 Uncharacterized protei 94.8 0.14 3.1E-06 52.5 8.9 196 510-753 2-229 (237)
133 COG2129 Predicted phosphoester 94.5 4.2 9.2E-05 41.6 18.6 205 506-751 4-217 (226)
134 TIGR03300 assembly_YfgL outer 94.5 9.9 0.00022 42.4 24.2 217 2-289 117-341 (377)
135 PF13360 PQQ_2: PQQ-like domai 94.5 6.6 0.00014 40.3 26.7 214 2-288 5-232 (238)
136 cd07384 MPP_Cdc1_like Saccharo 94.5 0.082 1.8E-06 52.4 6.4 44 541-584 48-101 (171)
137 PF13360 PQQ_2: PQQ-like domai 94.4 6.8 0.00015 40.2 23.6 181 2-226 48-237 (238)
138 cd07380 MPP_CWF19_N Schizosacc 94.4 0.093 2E-06 50.7 6.3 68 509-581 1-68 (150)
139 cd08166 MPP_Cdc1_like_1 unchar 94.2 0.055 1.2E-06 54.4 4.4 43 541-583 45-93 (195)
140 COG1409 Icc Predicted phosphoh 94.1 0.17 3.7E-06 54.1 8.6 74 507-587 2-82 (301)
141 COG4186 Predicted phosphoester 94.0 0.23 5E-06 47.2 7.7 54 541-599 48-101 (186)
142 COG1408 Predicted phosphohydro 93.6 0.16 3.4E-06 54.6 6.9 71 506-584 45-119 (284)
143 COG1407 Predicted ICC-like pho 93.3 0.32 7E-06 50.1 8.2 71 505-585 19-112 (235)
144 cd08164 MPP_Ted1 Saccharomyces 92.9 0.24 5.1E-06 49.9 6.4 65 513-582 24-110 (193)
145 cd00845 MPP_UshA_N_like Escher 92.7 0.22 4.8E-06 52.4 6.3 66 507-582 2-81 (252)
146 TIGR03300 assembly_YfgL outer 91.6 26 0.00057 39.0 23.1 155 28-227 59-216 (377)
147 COG1311 HYS2 Archaeal DNA poly 91.3 5.2 0.00011 45.3 15.1 212 507-750 227-460 (481)
148 PF14582 Metallophos_3: Metall 91.2 0.32 6.9E-06 49.5 5.0 72 506-584 6-103 (255)
149 PF07893 DUF1668: Protein of u 89.8 7.6 0.00016 43.0 14.9 120 88-229 76-215 (342)
150 PLN02533 probable purple acid 89.4 0.6 1.3E-05 53.3 6.0 25 692-716 311-335 (427)
151 cd00216 PQQ_DH Dehydrogenases 88.4 57 0.0012 38.0 25.8 83 34-121 228-328 (488)
152 cd00216 PQQ_DH Dehydrogenases 88.3 57 0.0012 38.0 26.3 120 2-121 122-273 (488)
153 cd07410 MPP_CpdB_N Escherichia 88.3 0.78 1.7E-05 49.1 5.7 21 694-714 208-229 (277)
154 PF06874 FBPase_2: Firmicute f 87.3 0.53 1.1E-05 54.6 3.7 57 691-748 507-573 (640)
155 PF08321 PPP5: PPP5 TPR repeat 87.0 2.4 5.1E-05 37.6 6.9 43 452-504 53-95 (95)
156 COG0420 SbcD DNA repair exonuc 86.7 1.8 3.9E-05 48.8 7.7 46 541-586 43-91 (390)
157 PF07893 DUF1668: Protein of u 85.2 8.8 0.00019 42.5 12.0 107 2-121 88-214 (342)
158 KOG3662 Cell division control 84.2 2 4.4E-05 47.9 6.3 42 541-582 96-143 (410)
159 PF12768 Rax2: Cortical protei 83.7 27 0.00059 37.5 14.4 106 4-123 20-130 (281)
160 cd07412 MPP_YhcR_N Bacillus su 83.2 1.6 3.4E-05 47.2 4.9 66 507-582 2-87 (288)
161 COG1520 FOG: WD40-like repeat 83.2 82 0.0018 35.1 21.0 158 30-227 64-225 (370)
162 cd07378 MPP_ACP5 Homo sapiens 82.4 2.7 5.9E-05 44.7 6.4 23 692-714 190-212 (277)
163 cd07408 MPP_SA0022_N Staphyloc 81.3 3 6.4E-05 44.2 6.1 65 507-582 2-81 (257)
164 PRK13684 Ycf48-like protein; P 79.4 1E+02 0.0023 33.9 20.9 182 2-230 111-297 (334)
165 PF08268 FBA_3: F-box associat 78.9 19 0.00041 33.5 10.1 85 31-122 2-88 (129)
166 PF12768 Rax2: Cortical protei 78.5 20 0.00044 38.4 11.3 126 37-176 1-130 (281)
167 cd07411 MPP_SoxB_N Thermus the 78.5 4.3 9.3E-05 43.1 6.2 35 542-582 55-94 (264)
168 cd07387 MPP_PolD2_C PolD2 (DNA 76.2 1.1E+02 0.0024 32.4 16.2 48 705-757 205-255 (257)
169 KOG2055 WD40 repeat protein [G 74.3 68 0.0015 36.2 13.8 107 34-168 269-376 (514)
170 TIGR03075 PQQ_enz_alc_DH PQQ-d 71.0 2.2E+02 0.0048 33.6 18.8 78 30-121 65-147 (527)
171 COG3855 Fbp Uncharacterized pr 70.2 4.9 0.00011 44.8 4.1 40 541-585 193-232 (648)
172 cd00842 MPP_ASMase acid sphing 69.4 12 0.00027 40.2 7.1 45 541-585 71-124 (296)
173 PRK09419 bifunctional 2',3'-cy 67.7 7.5 0.00016 50.4 5.7 66 507-582 662-735 (1163)
174 cd07409 MPP_CD73_N CD73 ecto-5 66.8 13 0.00028 39.9 6.6 24 691-714 193-217 (281)
175 KOG2055 WD40 repeat protein [G 66.1 2.4E+02 0.0052 32.1 18.1 151 35-224 225-377 (514)
176 KOG3325 Membrane coat complex 64.1 23 0.00051 33.7 6.6 104 508-654 3-108 (183)
177 COG1520 FOG: WD40-like repeat 64.1 2.4E+02 0.0051 31.3 21.0 101 2-120 123-225 (370)
178 PF10282 Lactonase: Lactonase, 63.3 1.7E+02 0.0037 32.2 14.8 176 28-230 147-333 (345)
179 PLN00033 photosystem II stabil 62.1 2.8E+02 0.006 31.4 22.3 97 6-121 116-214 (398)
180 PF08268 FBA_3: F-box associat 61.8 59 0.0013 30.2 9.2 72 102-176 18-89 (129)
181 PF04042 DNA_pol_E_B: DNA poly 59.5 15 0.00033 37.3 5.2 72 508-585 1-93 (209)
182 PF09910 DUF2139: Uncharacteri 59.0 2.6E+02 0.0057 30.2 14.9 166 75-268 30-219 (339)
183 TIGR03075 PQQ_enz_alc_DH PQQ-d 58.0 3.8E+02 0.0081 31.6 21.7 110 2-121 81-198 (527)
184 KOG2476 Uncharacterized conser 57.9 24 0.00052 39.8 6.4 71 505-580 5-75 (528)
185 cd07406 MPP_CG11883_N Drosophi 56.9 20 0.00044 37.9 5.7 57 516-582 21-82 (257)
186 PF14870 PSII_BNR: Photosynthe 54.5 3.2E+02 0.0069 29.7 20.0 165 2-200 39-204 (302)
187 COG0737 UshA 5'-nucleotidase/2 54.1 17 0.00037 42.7 5.0 71 506-583 27-115 (517)
188 COG1768 Predicted phosphohydro 53.5 26 0.00056 34.6 5.2 41 541-585 46-88 (230)
189 cd07405 MPP_UshA_N Escherichia 52.1 20 0.00044 38.5 4.9 19 697-715 200-221 (285)
190 PF06433 Me-amine-dh_H: Methyl 51.8 3.3E+02 0.0072 30.0 13.9 100 2-114 19-128 (342)
191 TIGR03074 PQQ_membr_DH membran 51.6 3.6E+02 0.0079 33.4 15.8 35 28-69 188-222 (764)
192 cd07407 MPP_YHR202W_N Saccharo 49.2 25 0.00055 37.8 5.0 38 541-583 53-97 (282)
193 KOG0649 WD40 repeat protein [G 46.3 3.7E+02 0.0081 28.2 15.5 137 63-229 99-243 (325)
194 cd08162 MPP_PhoA_N Synechococc 44.5 36 0.00077 37.2 5.3 69 508-582 3-90 (313)
195 TIGR00282 metallophosphoestera 44.2 45 0.00099 35.5 5.9 67 507-583 2-71 (266)
196 PTZ00235 DNA polymerase epsilo 43.1 81 0.0018 33.9 7.4 76 506-583 28-122 (291)
197 KOG0646 WD40 repeat protein [G 42.0 5.8E+02 0.013 29.1 15.2 60 28-100 85-146 (476)
198 PRK04043 tolB translocation pr 41.8 5.8E+02 0.012 29.1 21.2 153 51-230 213-366 (419)
199 KOG2321 WD40 repeat protein [G 41.7 1.9E+02 0.0041 33.8 10.3 125 75-225 131-262 (703)
200 KOG1378 Purple acid phosphatas 40.2 42 0.00091 38.1 5.0 34 693-726 322-355 (452)
201 PRK05137 tolB translocation pr 38.7 6.3E+02 0.014 28.6 24.1 148 51-228 226-373 (435)
202 KOG1432 Predicted DNA repair e 37.6 86 0.0019 34.3 6.6 44 541-584 103-148 (379)
203 PRK09420 cpdB bifunctional 2', 37.5 50 0.0011 39.9 5.6 68 505-582 25-121 (649)
204 TIGR01390 CycNucDiestase 2',3' 35.9 53 0.0012 39.6 5.4 66 507-582 4-98 (626)
205 KOG2863 RNA lariat debranching 35.2 40 0.00086 36.9 3.7 72 507-584 2-89 (456)
206 PRK09419 bifunctional 2',3'-cy 35.2 49 0.0011 43.0 5.3 23 692-714 256-279 (1163)
207 COG4880 Secreted protein conta 33.8 6.1E+02 0.013 28.8 12.3 29 189-230 571-599 (603)
208 PF02191 OLF: Olfactomedin-lik 33.4 6E+02 0.013 26.8 17.4 115 102-229 87-211 (250)
209 PRK05583 ribosomal protein L7A 33.0 41 0.00089 30.3 2.9 68 684-752 14-90 (104)
210 PF13088 BNR_2: BNR repeat-lik 30.9 2.9E+02 0.0063 28.9 9.6 132 6-146 141-275 (275)
211 cd07382 MPP_DR1281 Deinococcus 30.3 1.1E+02 0.0024 32.4 6.1 66 507-583 1-70 (255)
212 TIGR01530 nadN NAD pyrophospha 29.4 96 0.0021 36.8 6.1 37 541-582 52-93 (550)
213 COG0634 Hpt Hypoxanthine-guani 29.3 3.6E+02 0.0077 26.8 8.8 83 476-562 9-116 (178)
214 KOG1446 Histone H3 (Lys4) meth 29.1 7.7E+02 0.017 26.7 13.4 30 187-224 236-265 (311)
215 PF09637 Med18: Med18 protein; 28.3 60 0.0013 34.2 3.7 41 691-734 139-179 (250)
216 PF13570 PQQ_3: PQQ-like domai 27.5 1.1E+02 0.0024 21.8 3.9 23 31-60 18-40 (40)
217 PRK09558 ushA bifunctional UDP 27.0 81 0.0018 37.4 4.9 18 697-714 236-256 (551)
218 PRK11907 bifunctional 2',3'-cy 26.5 1E+02 0.0022 38.3 5.6 67 506-582 116-212 (814)
219 TIGR00282 metallophosphoestera 26.4 77 0.0017 33.8 4.1 39 541-583 2-41 (266)
220 PRK13684 Ycf48-like protein; P 26.2 8.9E+02 0.019 26.5 20.8 163 4-202 70-234 (334)
221 PF13088 BNR_2: BNR repeat-lik 26.0 7.5E+02 0.016 25.6 18.3 209 8-231 28-252 (275)
222 PRK04792 tolB translocation pr 26.0 1E+03 0.022 27.2 22.9 147 51-229 242-390 (448)
223 PTZ00422 glideosome-associated 25.5 84 0.0018 35.4 4.4 22 694-715 239-260 (394)
224 KOG4649 PQQ (pyrrolo-quinoline 25.4 8.4E+02 0.018 26.0 11.7 60 50-122 32-91 (354)
225 KOG3947 Phosphoesterases [Gene 25.3 96 0.0021 32.9 4.4 63 507-585 63-128 (305)
226 KOG0649 WD40 repeat protein [G 24.0 8.6E+02 0.019 25.6 16.9 63 34-114 126-188 (325)
227 TIGR02658 TTQ_MADH_Hv methylam 23.8 1E+03 0.022 26.4 27.0 101 2-114 29-138 (352)
228 KOG2111 Uncharacterized conser 23.1 1E+03 0.022 26.0 14.0 23 35-57 59-81 (346)
229 COG5184 ATS1 Alpha-tubulin sup 23.1 1.2E+03 0.025 27.0 12.5 27 80-106 114-140 (476)
230 KOG3339 Predicted glycosyltran 23.0 1.8E+02 0.0039 29.0 5.5 89 540-633 40-140 (211)
231 PF12641 Flavodoxin_3: Flavodo 21.6 3.2E+02 0.0068 26.7 7.0 33 540-575 40-72 (160)
232 PRK01742 tolB translocation pr 21.5 1.2E+03 0.026 26.3 17.3 140 51-229 228-369 (429)
233 KOG0310 Conserved WD40 repeat- 20.2 1.3E+03 0.029 26.4 16.8 131 88-274 165-302 (487)
No 1
>KOG0372 consensus Serine/threonine specific protein phosphatase involved in glycogen accumulation, PP2A-related [Carbohydrate transport and metabolism; Signal transduction mechanisms]
Probab=100.00 E-value=1.1e-79 Score=598.99 Aligned_cols=284 Identities=41% Similarity=0.724 Sum_probs=271.4
Q ss_pred HHHHHHHHhCCCCCCCCCCcccccCHHHHHHHHHHHHHHHhcCCceEeecCCeEEEecCCCCHHHHHHHHHHhCCCCCCC
Q 003577 456 HKKIISTLLRPRNWKAPANRRFFLDSYEVGELCYAAEQIFMQEPTVLQLRAPVKVFGDLHGQFGDLMRLFDEYGFPSTAG 535 (810)
Q Consensus 456 ~~~~i~~l~~~~~~~~~~~~~~~~~~~~i~~l~~~~~~~~~~e~~~l~~~~pi~vvGDiHG~~~~L~~~l~~~~~~~~~~ 535 (810)
+++.|+.|.+.. .+.+.++..||.++.+||.+|++|+.++.|+.|||||||||+||+.+|+..|.++..
T Consensus 3 ldr~ie~L~~~~----------li~E~eV~~LC~~~~eiL~~E~NV~~i~tPvtvcGDIHGQf~Dllelf~igG~~~~t- 71 (303)
T KOG0372|consen 3 LDRQIEQLRRCE----------LIAESEVKALCAKVREILVEESNVQRIDTPVTVCGDIHGQFYDLLELFRIGGDVPET- 71 (303)
T ss_pred HHHHHHHHHhcC----------CCcHHHHHHHHHHHHHHHhcCCCceecCCCcEEeecccchHHHHHHHHHhCCCCCCC-
Confidence 477888888763 578999999999999999999999999999999999999999999999999988876
Q ss_pred CcceeeEEEeccccCCCCChHHHHHHHHHHhhcCCCcEEEecCCccccchhhccCChHHHHHhhCCCCcccccccccccc
Q 003577 536 DITYIDYLFLGDYVDRGQHSLETITLLLALKIEYPENVHLIRGNHEAADINALFGFRLECIERMGENDGIWAWTRFNQLF 615 (810)
Q Consensus 536 ~~~~~~~vfLGDyVDRG~~s~evl~ll~~lk~~~p~~v~llrGNHE~~~~~~~~gf~~e~~~~~~~~~~~~~~~~~~~~f 615 (810)
+|+|||||||||.+|+|++.||++||++||++|+|||||||++.++..|||++||.+|||. ..+|+-+.++|
T Consensus 72 -----~YLFLGDyVDRG~~SvEt~lLLl~lK~rYP~ritLiRGNHEsRqitqvYGFY~EclrKYG~---~~vWr~c~eiF 143 (303)
T KOG0372|consen 72 -----NYLFLGDYVDRGYYSVETFLLLLALKVRYPDRITLIRGNHESRQITQVYGFYDECLRKYGS---ANVWRYCTEIF 143 (303)
T ss_pred -----ceEeecchhccccchHHHHHHHHHHhhcCcceeEEeeccchhhhhhhhhhHHHHHHHHcCC---hHHHHHHHHHH
Confidence 8999999999999999999999999999999999999999999999999999999999985 47999999999
Q ss_pred ccCceeEEEcCcEEEecCCcCCcccchhhhhcccCCcccCCCchhhhhhccCCCCCCCCCCCCCcCCCCCceeeeCHHHH
Q 003577 616 NCLPLAALIEKKIICMHGGIGRSIHSVEQIEKLERPITMDAGSIILMDLLWSDPTENDSIEGLRPNARGPGLVTFGPDRV 695 (810)
Q Consensus 616 ~~lPla~~i~~~il~vHgGi~~~~~~~~~i~~~~rp~~~~~~~~~~~dllWsdP~~~~~~~~~~~~~rg~~~~~fg~~~~ 695 (810)
++||++|+|+++|||||||++|++.++|||+.+.|-.+++.++ .++|||||||.+ ..||.-++||+| +.||.+++
T Consensus 144 dyL~l~aiid~kifCVHGGlSP~i~~lDqIr~lDR~~Eiph~g-~m~DllWSDPee---~~g~~~SPRGaG-ylFG~dvv 218 (303)
T KOG0372|consen 144 DYLSLAAIIDGKIFCVHGGLSPSIQTLDQIRVLDRKQEVPHDG-AMCDLLWSDPEE---GPGWGLSPRGAG-YLFGEDVV 218 (303)
T ss_pred HhhhHhheecCcEEEEcCCCCcchhhHHHHHHhhccccCCCCC-cchheeccCccc---CCCcccCCCCcc-ccccHHHH
Confidence 9999999999999999999999999999999999999999887 899999999986 459999999999 79999999
Q ss_pred HHHHHhcCCcEEEEeccccccceEEecCCeEEEEEccCCCCCCCCCeEEEEEEcCcceEEEEEecCCC
Q 003577 696 SDFCKRNKLQLIIRAHECVMDGFERFAQGQLITLFSATNYCGTANNAGAILVVGRGLVVVPKLIHPLP 763 (810)
Q Consensus 696 ~~fl~~~~l~~iiR~H~~~~~G~~~~~~~~~itvfSa~~y~~~~~n~ga~l~~~~~~~~~~~~~~~~~ 763 (810)
++||+.||+++|+|+||.|++||++.++++|+|||||||||+.++|.||||.++++....+++|...+
T Consensus 219 ~~F~~~N~~~~I~RaHQLv~eGyk~~F~~~v~TVWSAPNYCYrCGN~AsIl~lde~~~~~F~vFeaa~ 286 (303)
T KOG0372|consen 219 ESFLEANGLSLICRAHQLVMEGYKWHFDEKVVTVWSAPNYCYRCGNVAAILELDEDLDKDFRVFEAAP 286 (303)
T ss_pred HHHHHhCChHHHHHHHHHHHhhHHHhcCCceEEEecCCchhhhcCChHHheeeccccCcceEeeecch
Confidence 99999999999999999999999999999999999999999999999999999999999999997654
No 2
>KOG0374 consensus Serine/threonine specific protein phosphatase PP1, catalytic subunit [Signal transduction mechanisms; General function prediction only]
Probab=100.00 E-value=1.7e-74 Score=615.87 Aligned_cols=295 Identities=52% Similarity=0.931 Sum_probs=275.8
Q ss_pred HHHHHHHHhCCCCCCCCCCcccccCHHHHHHHHHHHHHHHhcCCceEeecCCeEEEecCCCCHHHHHHHHHHhC-CCCCC
Q 003577 456 HKKIISTLLRPRNWKAPANRRFFLDSYEVGELCYAAEQIFMQEPTVLQLRAPVKVFGDLHGQFGDLMRLFDEYG-FPSTA 534 (810)
Q Consensus 456 ~~~~i~~l~~~~~~~~~~~~~~~~~~~~i~~l~~~~~~~~~~e~~~l~~~~pi~vvGDiHG~~~~L~~~l~~~~-~~~~~ 534 (810)
.+++|..++..............|+++||.+||..+.++|..+|+++++++||+|||||||||.||+++|+..| +|++.
T Consensus 9 ~~~~i~~~~~~~~~~~~~~~~~~l~~~ei~~l~~~~~~if~~~~~l~e~~aPV~i~GDiHGq~~DLlrlf~~~g~~pp~~ 88 (331)
T KOG0374|consen 9 LDELIRKLLSVGNKKTEKKRQVPLSKSEIIKLCDKAREIFLSQPTLLELSAPVKIVGDIHGQFGDLLRLFDLLGSFPPDQ 88 (331)
T ss_pred HHHHHHHHhhccccCCCcccceeccHHHHHHHHHHHHHHhcCCCceeecCCCEEEEccCcCCHHHHHHHHHhcCCCCCcc
Confidence 46677777765543333333455999999999999999999999999999999999999999999999999999 89776
Q ss_pred CCcceeeEEEeccccCCCCChHHHHHHHHHHhhcCCCcEEEecCCccccchhhccCChHHHHHhhCCCCccccccccccc
Q 003577 535 GDITYIDYLFLGDYVDRGQHSLETITLLLALKIEYPENVHLIRGNHEAADINALFGFRLECIERMGENDGIWAWTRFNQL 614 (810)
Q Consensus 535 ~~~~~~~~vfLGDyVDRG~~s~evl~ll~~lk~~~p~~v~llrGNHE~~~~~~~~gf~~e~~~~~~~~~~~~~~~~~~~~ 614 (810)
+|||||||||||++|+|++.||+++|++||++||+||||||++.+|..|||++||.+||+. ..+|+.|+++
T Consensus 89 ------~ylFLGDYVDRG~~slE~i~LL~a~Ki~yp~~~~lLRGNHE~~~in~~yGFydE~~rr~~~---~~~w~~F~~~ 159 (331)
T KOG0374|consen 89 ------NYVFLGDYVDRGKQSLETICLLFALKIKYPENVFLLRGNHECASINRIYGFYDECKRRYGE---IKLWKAFNDA 159 (331)
T ss_pred ------cEEEecccccCCccceEEeehhhhhhhhCCceEEEeccccccccccceeeeHHHHHHhcch---HHHHHHHHHH
Confidence 8999999999999999999999999999999999999999999999999999999999964 5799999999
Q ss_pred cccCceeEEEcCcEEEecCCcCCcccchhhhhcccCCcccCCCchhhhhhccCCCCCCCCCCCCCcCCCCCceeeeCHHH
Q 003577 615 FNCLPLAALIEKKIICMHGGIGRSIHSVEQIEKLERPITMDAGSIILMDLLWSDPTENDSIEGLRPNARGPGLVTFGPDR 694 (810)
Q Consensus 615 f~~lPla~~i~~~il~vHgGi~~~~~~~~~i~~~~rp~~~~~~~~~~~dllWsdP~~~~~~~~~~~~~rg~~~~~fg~~~ 694 (810)
|++||++|+|+++|+|+||||+|.+.++++|+.|.||.+.++.+ +++|||||||+. .+.||.+|.||.+ +.||+++
T Consensus 160 f~~mp~~a~i~~kI~CmhGGlsp~l~~~~~i~~i~rp~~~~~~g-ll~DLlWsdp~~--~~~g~~~n~Rg~s-~~fg~~~ 235 (331)
T KOG0374|consen 160 FNCLPLAALIDGKILCMHGGLSPHLKSLDQIRAIPRPTDSPDKG-LLCDLLWSDPDD--DVPGWEENDRGVS-FTFGPAV 235 (331)
T ss_pred HhhCchhheecceEEEecCCCChhhcChHHHhhccCCcCCCccc-eeeeeeecCCCC--CCCCcccCCCcee-eEecHHH
Confidence 99999999999999999999999999999999999998888766 999999999986 3789999999999 8999999
Q ss_pred HHHHHHhcCCcEEEEeccccccceEEecCCeEEEEEccCCCCCCCCCeEEEEEEcCcceEEEEEecCCC
Q 003577 695 VSDFCKRNKLQLIIRAHECVMDGFERFAQGQLITLFSATNYCGTANNAGAILVVGRGLVVVPKLIHPLP 763 (810)
Q Consensus 695 ~~~fl~~~~l~~iiR~H~~~~~G~~~~~~~~~itvfSa~~y~~~~~n~ga~l~~~~~~~~~~~~~~~~~ 763 (810)
+++||+++++++||||||+|+|||++|++++++||||||+|||.++|+||+|.|++++.+.+++++|..
T Consensus 236 v~~f~~~~~ldlivRaHqvv~dGyeffa~r~lvTIFSAP~Ycg~~~n~gavm~Vd~~l~~sf~~l~p~~ 304 (331)
T KOG0374|consen 236 VEDFCKKLDLDLIVRAHQVVEDGYEFFAGRKLVTIFSAPNYCGEFDNAGAVMRVDKNLKCSFVILRPEG 304 (331)
T ss_pred HHHHHHHhCcceEEEcCccccccceEecCceEEEEecCchhccccCCceEEEEECCCCeEEEEEecccc
Confidence 999999999999999999999999999999999999999999999999999999999999999999953
No 3
>KOG0373 consensus Serine/threonine specific protein phosphatase involved in cell cycle control, PP2A-related [Cell cycle control, cell division, chromosome partitioning; Signal transduction mechanisms]
Probab=100.00 E-value=3.9e-72 Score=536.71 Aligned_cols=284 Identities=38% Similarity=0.715 Sum_probs=268.6
Q ss_pred HHHHHHHhCCCCCCCCCCcccccCHHHHHHHHHHHHHHHhcCCceEeecCCeEEEecCCCCHHHHHHHHHHhCCCCCCCC
Q 003577 457 KKIISTLLRPRNWKAPANRRFFLDSYEVGELCYAAEQIFMQEPTVLQLRAPVKVFGDLHGQFGDLMRLFDEYGFPSTAGD 536 (810)
Q Consensus 457 ~~~i~~l~~~~~~~~~~~~~~~~~~~~i~~l~~~~~~~~~~e~~~l~~~~pi~vvGDiHG~~~~L~~~l~~~~~~~~~~~ 536 (810)
++.|+...+.+ .|+++|+..||+.++++|..|.++..++.|+.|+|||||||+||+++|+..|-.|+.
T Consensus 7 d~wi~~vk~ck----------yLpE~elk~LCe~v~d~L~eEsNvqPV~tPVTvCGDIHGQFyDL~eLFrtgG~vP~t-- 74 (306)
T KOG0373|consen 7 DQWIETVKKCK----------YLPENELKRLCEMVKDILMEESNVQPVSTPVTVCGDIHGQFYDLLELFRTGGQVPDT-- 74 (306)
T ss_pred HHHHHHHHHcC----------CCCHHHHHHHHHHHHHHHhhhcCccccCCCeeEeeccchhHHHHHHHHHhcCCCCCc--
Confidence 55666655543 589999999999999999999999999999999999999999999999999877765
Q ss_pred cceeeEEEeccccCCCCChHHHHHHHHHHhhcCCCcEEEecCCccccchhhccCChHHHHHhhCCCCccccccccccccc
Q 003577 537 ITYIDYLFLGDYVDRGQHSLETITLLLALKIEYPENVHLIRGNHEAADINALFGFRLECIERMGENDGIWAWTRFNQLFN 616 (810)
Q Consensus 537 ~~~~~~vfLGDyVDRG~~s~evl~ll~~lk~~~p~~v~llrGNHE~~~~~~~~gf~~e~~~~~~~~~~~~~~~~~~~~f~ 616 (810)
+|||+|||||||.+|+|++.+|+.||.+||.+|.|||||||.+.+...|||++||..|||.. ..|+-+.++|+
T Consensus 75 ----nYiFmGDfVDRGyySLEtfT~l~~LkaryP~~ITLlRGNHEsRqitqVYGFydECq~KYGna---n~wkycckVFD 147 (306)
T KOG0373|consen 75 ----NYIFMGDFVDRGYYSLETFTLLLLLKARYPAKITLLRGNHESRQITQVYGFYDECQNKYGNA---NVWKYCCKVFD 147 (306)
T ss_pred ----ceEEeccccccccccHHHHHHHHHHhhcCCceeEEeeccchhhhhhhhhhhHHHHHhhcCCc---hHHHHHHHHHh
Confidence 89999999999999999999999999999999999999999999999999999999999864 68999999999
Q ss_pred cCceeEEEcCcEEEecCCcCCcccchhhhhcccCCcccCCCchhhhhhccCCCCCCCCCCCCCcCCCCCceeeeCHHHHH
Q 003577 617 CLPLAALIEKKIICMHGGIGRSIHSVEQIEKLERPITMDAGSIILMDLLWSDPTENDSIEGLRPNARGPGLVTFGPDRVS 696 (810)
Q Consensus 617 ~lPla~~i~~~il~vHgGi~~~~~~~~~i~~~~rp~~~~~~~~~~~dllWsdP~~~~~~~~~~~~~rg~~~~~fg~~~~~ 696 (810)
.|++||+|+++|+|||||+||.+.++|||+.|.|..++|.++ .+|||+||||++ ++.|.-++||+| +.||.+++.
T Consensus 148 ~LtlaAiID~~vLCVHGGLSPdirtlDqir~i~R~qEiPh~G-~fcDlmWSDPed---ve~W~vSpRGAG-wlFGskVt~ 222 (306)
T KOG0373|consen 148 FLTLAAIIDEKVLCVHGGLSPDIRTLDQIRLIERNQEIPHEG-PFCDLMWSDPED---VETWAVSPRGAG-WLFGSKVTT 222 (306)
T ss_pred hhhHHHHhcCcEEEEcCCCCccceeHHHHHhHHhhccCCCCC-CccceeccChhh---hhhheeCCCCcc-eeechhhhH
Confidence 999999999999999999999999999999999999999888 799999999985 788999999999 689999999
Q ss_pred HHHHhcCCcEEEEeccccccceEEecCCe-EEEEEccCCCCCCCCCeEEEEEEcCcceEEEEEecCCCC
Q 003577 697 DFCKRNKLQLIIRAHECVMDGFERFAQGQ-LITLFSATNYCGTANNAGAILVVGRGLVVVPKLIHPLPP 764 (810)
Q Consensus 697 ~fl~~~~l~~iiR~H~~~~~G~~~~~~~~-~itvfSa~~y~~~~~n~ga~l~~~~~~~~~~~~~~~~~~ 764 (810)
+|+..|+|++|+|+||.|.+||++.+++| |+|||||||||.+++|.|+||.++++++-++|+|..+|.
T Consensus 223 eF~~iN~L~LicRaHQLV~EG~KymF~eK~lvTVWSAPNYCYRCGNvAsi~~~d~~~~r~~k~F~avpd 291 (306)
T KOG0373|consen 223 EFNHINNLNLICRAHQLVQEGFKYMFDEKGLVTVWSAPNYCYRCGNVASIMSFDDNLERETKIFSAVPD 291 (306)
T ss_pred HHHhccchHHHHhHHHHHHhhHHhccCCCCEEEEecCCchhhhccCeeeEEEecccCCccceeeeecCC
Confidence 99999999999999999999999999888 999999999999999999999999999999999987654
No 4
>PTZ00480 serine/threonine-protein phosphatase; Provisional
Probab=100.00 E-value=6.4e-70 Score=579.17 Aligned_cols=294 Identities=47% Similarity=0.860 Sum_probs=274.3
Q ss_pred HHHHHHHHhCCCCCCCCCCcccccCHHHHHHHHHHHHHHHhcCCceEeecCCeEEEecCCCCHHHHHHHHHHhCCCCCCC
Q 003577 456 HKKIISTLLRPRNWKAPANRRFFLDSYEVGELCYAAEQIFMQEPTVLQLRAPVKVFGDLHGQFGDLMRLFDEYGFPSTAG 535 (810)
Q Consensus 456 ~~~~i~~l~~~~~~~~~~~~~~~~~~~~i~~l~~~~~~~~~~e~~~l~~~~pi~vvGDiHG~~~~L~~~l~~~~~~~~~~ 535 (810)
++++|..+++.+.+++. ....|++++|.+||++|+++|++||+++++.+|+.||||||||+.+|.++|+..++++..
T Consensus 11 ~~~~i~~~~~~~~~~~~--~~~~l~~~~i~~l~~~~~~il~~ep~ll~i~~~i~vvGDIHG~~~dL~~l~~~~g~~~~~- 87 (320)
T PTZ00480 11 VDNIIERLLSVRGSKPG--KNVNLTEAEVRGLCIKARDIFISQPILLELEAPLKICGDVHGQYFDLLRLFEYGGYPPES- 87 (320)
T ss_pred HHHHHHHHHhccccCcc--ccCCCCHHHHHHHHHHHHHHHHhCCceEecCCCeEEEeecccCHHHHHHHHHhcCCCCcc-
Confidence 68899999987665532 224689999999999999999999999999999999999999999999999999998765
Q ss_pred CcceeeEEEeccccCCCCChHHHHHHHHHHhhcCCCcEEEecCCccccchhhccCChHHHHHhhCCCCcccccccccccc
Q 003577 536 DITYIDYLFLGDYVDRGQHSLETITLLLALKIEYPENVHLIRGNHEAADINALFGFRLECIERMGENDGIWAWTRFNQLF 615 (810)
Q Consensus 536 ~~~~~~~vfLGDyVDRG~~s~evl~ll~~lk~~~p~~v~llrGNHE~~~~~~~~gf~~e~~~~~~~~~~~~~~~~~~~~f 615 (810)
+|||||||||||++|+||+.+|+++|+.+|.++++||||||...++..|||..||..+|+ ..+|..++++|
T Consensus 88 -----~ylfLGDyVDRG~~s~evl~ll~~lki~~p~~v~llRGNHE~~~~~~~ygF~~e~~~~y~----~~l~~~~~~~F 158 (320)
T PTZ00480 88 -----NYLFLGDYVDRGKQSLETICLLLAYKIKYPENFFLLRGNHECASINRIYGFYDECKRRYT----IKLWKTFTDCF 158 (320)
T ss_pred -----eEEEeceecCCCCCcHHHHHHHHHhcccCCCceEEEecccchhhhhhhcchHHHHHhhcC----HHHHHHHHHHH
Confidence 899999999999999999999999999999999999999999999999999999999994 46999999999
Q ss_pred ccCceeEEEcCcEEEecCCcCCcccchhhhhcccCCcccCCCchhhhhhccCCCCCCCCCCCCCcCCCCCceeeeCHHHH
Q 003577 616 NCLPLAALIEKKIICMHGGIGRSIHSVEQIEKLERPITMDAGSIILMDLLWSDPTENDSIEGLRPNARGPGLVTFGPDRV 695 (810)
Q Consensus 616 ~~lPla~~i~~~il~vHgGi~~~~~~~~~i~~~~rp~~~~~~~~~~~dllWsdP~~~~~~~~~~~~~rg~~~~~fg~~~~ 695 (810)
++||+||+|++++|||||||+|.+.++++|+.++||.+.+..+ +++|+|||||.. ...+|.+|+||.| +.||++++
T Consensus 159 ~~LPlaAiI~~~i~cvHGGI~p~~~~l~~i~~i~rp~~~~~~~-~~~dllWSDP~~--~~~~~~~s~RG~g-~~FG~~~~ 234 (320)
T PTZ00480 159 NCLPVAALIDEKILCMHGGLSPELSNLEQIRRIMRPTDVPDTG-LLCDLLWSDPDK--DVQGWADNERGVS-YVFSQEIV 234 (320)
T ss_pred HhccHhheecCcEEEEcCCcCcccCCHHHHhcccCCCCCCccc-hhhheeecCccc--ccCCCccCCCCCc-cccCHHHH
Confidence 9999999999999999999999999999999999999887655 899999999985 3578999999999 78999999
Q ss_pred HHHHHhcCCcEEEEeccccccceEEecCCeEEEEEccCCCCCCCCCeEEEEEEcCcceEEEEEecCCCCC
Q 003577 696 SDFCKRNKLQLIIRAHECVMDGFERFAQGQLITLFSATNYCGTANNAGAILVVGRGLVVVPKLIHPLPPP 765 (810)
Q Consensus 696 ~~fl~~~~l~~iiR~H~~~~~G~~~~~~~~~itvfSa~~y~~~~~n~ga~l~~~~~~~~~~~~~~~~~~~ 765 (810)
++||++||+++||||||++++||+++++++|||||||||||+..+|+||+|.|++++.+.++.|.|.+..
T Consensus 235 ~~Fl~~n~l~~IiR~Hq~v~~G~~~~~~~~~iTvFSa~~Y~~~~~N~ga~l~i~~~~~~~~~~~~p~~~~ 304 (320)
T PTZ00480 235 QVFLKKHELDLICRAHQVVEDGYEFFSKRQLVTLFSAPNYCGEFDNAGSMMTIDESLMCSFQILKPAEQG 304 (320)
T ss_pred HHHHHhCCCcEEEEcCccccCceEEeCCCcEEEEeCCcccCCCCCccEEEEEECCCCcEeEEEecCCccc
Confidence 9999999999999999999999999999999999999999999999999999999999999999876543
No 5
>cd07420 MPP_RdgC Drosophila melanogaster RdgC and related proteins, metallophosphatase domain. RdgC (retinal degeneration C) is a vertebrate serine-threonine protein phosphatase that is required to prevent light-induced retinal degeneration. In addition to its catalytic domain, RdgC has two C-terminal EF hands. Homologs of RdgC include the human phosphatases protein phosphatase with EF hands 1 and -2 (PPEF-1 and -2). PPEF-1 transcripts are present at low levels in the retina, PPEF-2 transcripts and PPEF-2 protein are present at high levels in photoreceptors. The PPP (phosphoprotein phosphatase) family, to which RdgC belongs, is one of two known protein phosphatase families specific for serine and threonine. The PPP family also includes: PP1, PP2A, PP2B (calcineurin), PP4, PP5, PP6, PP7, Bsu1, PrpE, PrpA/PrpB, and ApA4 hydrolase. The PPP catalytic domain is defined by three conserved motifs (-GDXHG-, -GDXVDRG- and -GNHE-). The PPP enzyme family is ancient with members found in all
Probab=100.00 E-value=3e-69 Score=575.15 Aligned_cols=285 Identities=33% Similarity=0.587 Sum_probs=255.6
Q ss_pred HHHHHHHHHhCCCCCCCCCCcccccCHHHHHHHHHHHHHHHhcCCceEeecC----CeEEEecCCCCHHHHHHHHHHhCC
Q 003577 455 LHKKIISTLLRPRNWKAPANRRFFLDSYEVGELCYAAEQIFMQEPTVLQLRA----PVKVFGDLHGQFGDLMRLFDEYGF 530 (810)
Q Consensus 455 ~~~~~i~~l~~~~~~~~~~~~~~~~~~~~i~~l~~~~~~~~~~e~~~l~~~~----pi~vvGDiHG~~~~L~~~l~~~~~ 530 (810)
.++++|+.+++.. .|+++++.+||++|+++|++||+|+++.. |++|||||||||.+|+++|+..|+
T Consensus 6 ~~~~~i~~~~~~~----------~l~~~~i~~L~~~a~~il~~ep~vl~i~~~~~~~~~vvGDiHG~~~dL~~il~~~g~ 75 (321)
T cd07420 6 HIDALIEAFKEKQ----------LLHAKYVLLILREARKVLKQLPNISRVSTSISKQVTICGDLHGKLDDLFLIFYKNGL 75 (321)
T ss_pred HHHHHHHHHHccC----------CCCHHHHHHHHHHHHHHHHhCCCEEEecCCCCCCeEEEEeCCCCHHHHHHHHHHcCC
Confidence 3678899988643 47899999999999999999999999986 899999999999999999999998
Q ss_pred CCCCCCcceeeEEEeccccCCCCChHHHHHHHHHHhhcCCCcEEEecCCccccchhhccCChHHHHHhhCCCCccccccc
Q 003577 531 PSTAGDITYIDYLFLGDYVDRGQHSLETITLLLALKIEYPENVHLIRGNHEAADINALFGFRLECIERMGENDGIWAWTR 610 (810)
Q Consensus 531 ~~~~~~~~~~~~vfLGDyVDRG~~s~evl~ll~~lk~~~p~~v~llrGNHE~~~~~~~~gf~~e~~~~~~~~~~~~~~~~ 610 (810)
|+... +|||||||||||++|+||+.+|++||++||+++++||||||.+.++..|||.+||..+|+.+ ...+|+.
T Consensus 76 ~~~~~-----~~lFLGDyVDRG~~s~Evl~ll~~lk~~~p~~v~llRGNHE~~~~~~~yGf~~e~~~~y~~~-~~~l~~~ 149 (321)
T cd07420 76 PSPEN-----PYVFNGDFVDRGKRSIEILIILFAFFLVYPNEVHLNRGNHEDHIMNLRYGFTKEVMSKYKLH-GKKILRL 149 (321)
T ss_pred CCccc-----eEEEeccccCCCCCcHHHHHHHHHHhhcCCCcEEEecCchhhhhhhhhcChHHHHHHHhCcc-HHHHHHH
Confidence 86532 79999999999999999999999999999999999999999999999999999999999753 4679999
Q ss_pred cccccccCceeEEEcCcEEEecCCcCCcccchhhhhcccCCccc-----CC---------------------Cchhhhhh
Q 003577 611 FNQLFNCLPLAALIEKKIICMHGGIGRSIHSVEQIEKLERPITM-----DA---------------------GSIILMDL 664 (810)
Q Consensus 611 ~~~~f~~lPla~~i~~~il~vHgGi~~~~~~~~~i~~~~rp~~~-----~~---------------------~~~~~~dl 664 (810)
++++|++||+||+|++++|||||||++ ..++++|++++|+... +. ...+++|+
T Consensus 150 ~~~~F~~LPlaaii~~~i~cvHGGi~~-~~~l~~i~~i~r~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~dl 228 (321)
T cd07420 150 LEDVFSWLPLATIIDNKILVVHGGISD-STDLDLLDKIDRHKYVSVLRPPLRKGMEELTGEEEDPSEPLDKTEWRQILDI 228 (321)
T ss_pred HHHHHHhCCceEEEcCCEEEEeCCCCC-ccCHHHHHhhhccccccccCCCccccccccccccccccccccccccchhhee
Confidence 999999999999999999999999997 4789999999884211 11 01368899
Q ss_pred ccCCCCCCCCCCCCCcCCCCCceeeeCHHHHHHHHHhcCCcEEEEeccccccceEEecCCeEEEEEccCCCCCCCCCeEE
Q 003577 665 LWSDPTENDSIEGLRPNARGPGLVTFGPDRVSDFCKRNKLQLIIRAHECVMDGFERFAQGQLITLFSATNYCGTANNAGA 744 (810)
Q Consensus 665 lWsdP~~~~~~~~~~~~~rg~~~~~fg~~~~~~fl~~~~l~~iiR~H~~~~~G~~~~~~~~~itvfSa~~y~~~~~n~ga 744 (810)
|||||... ...|.+++||.| +.||++++++||++|++++||||||++++||+++++++|+|||||||||+..+|+||
T Consensus 229 LWSDP~~~--~~~~~~~~RG~g-~~FG~~~~~~Fl~~n~l~~IIR~He~v~~G~~~~~~~~~iTvFSa~nY~~~~~N~ga 305 (321)
T cd07420 229 LWSDPKAQ--KGCKPNTFRGGG-CYFGPDVTSKVLQKHGLSLLIRSHECKPEGYEFCHNNKVITIFSASNYYEEGSNRGA 305 (321)
T ss_pred eecCCccC--CCCCccCCCCCc-cccCHHHHHHHHHHCCCcEEEEcChhhhcceEEecCCeEEEEecCCccCCCCCccEE
Confidence 99999853 233666789999 689999999999999999999999999999999999999999999999999999999
Q ss_pred EEEEcCcceEEEEEe
Q 003577 745 ILVVGRGLVVVPKLI 759 (810)
Q Consensus 745 ~l~~~~~~~~~~~~~ 759 (810)
+|.|++++++.++.+
T Consensus 306 vl~i~~~~~~~f~~~ 320 (321)
T cd07420 306 YIKLGPDLTPHFVQY 320 (321)
T ss_pred EEEECCCCceeEEEe
Confidence 999999988877655
No 6
>cd07419 MPP_Bsu1_C Arabidopsis thaliana Bsu1 phosphatase and related proteins, C-terminal metallophosphatase domain. Bsu1 encodes a nuclear serine-threonine protein phosphatase found in plants and protozoans. Bsu1 has a C-terminal phosphatase domain and an N-terminal Kelch-repeat domain. Bsu1 is preferentially expressed in elongating plant cells. It modulates the phosphorylation state of Bes1, a transcriptional regulator phosphorylated by the glycogen synthase kinase Bin2, as part of a steroid hormone signal transduction pathway. The PPP (phosphoprotein phosphatase) family, to which Bsu1 belongs, is one of two known protein phosphatase families specific for serine and threonine. The PPP family also includes: PP1, PP2A, PP2B (calcineurin), PP4, PP5, PP6, PP7, Bsu1, RdgC, PrpE, PrpA/PrpB, and ApA4 hydrolase. The PPP catalytic domain is defined by three conserved motifs (-GDXHG-, -GDXVDRG- and -GNHE-). The PPP enzyme family is ancient with members found in all eukaryotes, and in most
Probab=100.00 E-value=7.4e-69 Score=576.73 Aligned_cols=303 Identities=74% Similarity=1.267 Sum_probs=278.8
Q ss_pred HHHHHhCCCCCCCCCCcccccCHHHHHHHHHHHHHHHhcCCceEeecCCeEEEecCCCCHHHHHHHHHHhCCCCCC--CC
Q 003577 459 IISTLLRPRNWKAPANRRFFLDSYEVGELCYAAEQIFMQEPTVLQLRAPVKVFGDLHGQFGDLMRLFDEYGFPSTA--GD 536 (810)
Q Consensus 459 ~i~~l~~~~~~~~~~~~~~~~~~~~i~~l~~~~~~~~~~e~~~l~~~~pi~vvGDiHG~~~~L~~~l~~~~~~~~~--~~ 536 (810)
+|++|++|+.|+++...++.|+++++.+||++|+++|++||+++++.+|++|||||||||++|.++|+.+++++.. ++
T Consensus 1 ~~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~~~~~il~~e~~~~~i~~~~~viGDIHG~~~~L~~ll~~~g~~~~~~~~~ 80 (311)
T cd07419 1 IITHLLKPRIWKPPTDRRFFFNWNEILELCDAAEDIFKQEPMVLRLRAPIKIFGDIHGQFGDLMRLFDEYGSPVTEAAGD 80 (311)
T ss_pred ChHHhcCcccccCccccccCCCHHHHHHHHHHHHHHHHhCCCeEeeCCCEEEEEeccCCHHHHHHHHHHcCCCcccccCC
Confidence 4789999999999888888999999999999999999999999999999999999999999999999999988641 22
Q ss_pred cceeeEEEeccccCCCCChHHHHHHHHHHhhcCCCcEEEecCCccccchhhccCChHHHHHhhCCC--Cccccccccccc
Q 003577 537 ITYIDYLFLGDYVDRGQHSLETITLLLALKIEYPENVHLIRGNHEAADINALFGFRLECIERMGEN--DGIWAWTRFNQL 614 (810)
Q Consensus 537 ~~~~~~vfLGDyVDRG~~s~evl~ll~~lk~~~p~~v~llrGNHE~~~~~~~~gf~~e~~~~~~~~--~~~~~~~~~~~~ 614 (810)
....+|||||||||||++|+|||.+|++||+.+|.++++||||||.+.++..|||..||..+|+.. .+..+|..++++
T Consensus 81 ~~~~~~vfLGDyVDRGp~s~evl~ll~~lk~~~p~~v~lLRGNHE~~~l~~~~gf~~e~~~~~~~~~~~~~~l~~~~~~~ 160 (311)
T cd07419 81 IEYIDYLFLGDYVDRGSNSLETICLLLALKVKYPNQIHLIRGNHEDRDINALFGFREECKERLGEDPNDGDSVWRRINRL 160 (311)
T ss_pred CcCceEEEECCccCCCCChHHHHHHHHHhhhcCCCcEEEeccccchHHHHHHhcccHHHHHhcCccchhhHHHHHHHHHH
Confidence 222379999999999999999999999999999999999999999999999999999999999762 234689999999
Q ss_pred cccCceeEEEcCcEEEecCCcCCcccchhhhhcccCCcccCCCchhhhhhccCCCCCCCCCCCCCcCC---CCCce-eee
Q 003577 615 FNCLPLAALIEKKIICMHGGIGRSIHSVEQIEKLERPITMDAGSIILMDLLWSDPTENDSIEGLRPNA---RGPGL-VTF 690 (810)
Q Consensus 615 f~~lPla~~i~~~il~vHgGi~~~~~~~~~i~~~~rp~~~~~~~~~~~dllWsdP~~~~~~~~~~~~~---rg~~~-~~f 690 (810)
|++||++++++++++||||||+|.+.++++|+.+.||...+....+++|+|||||...+...++.+++ ||.|. +.|
T Consensus 161 f~~LPl~avi~~~~l~vHgGi~p~~~~l~~i~~i~r~~~~~~~~~~~~dllWsDP~~~~~~~~~~~~~~~~rg~g~~~~f 240 (311)
T cd07419 161 FEWLPLAAIIEDKILCMHGGIGRSINHVSEIEDLKRPLTMEFGEQVVMDLLWSDPTENDSVLGLRPNAIDPRGPGLIVKF 240 (311)
T ss_pred HHhCchhheecccEEEEccCCCCCCCcHHHHhhcCCCCCCCCCCcceeeeeccCccccccccccccCCCCCCCCCcceeE
Confidence 99999999999999999999999999999999999998554444589999999999765567888876 99994 799
Q ss_pred CHHHHHHHHHhcCCcEEEEeccccccceEEecCCeEEEEEccCCCCCCCCCeEEEEEEcCcceEEEEEecC
Q 003577 691 GPDRVSDFCKRNKLQLIIRAHECVMDGFERFAQGQLITLFSATNYCGTANNAGAILVVGRGLVVVPKLIHP 761 (810)
Q Consensus 691 g~~~~~~fl~~~~l~~iiR~H~~~~~G~~~~~~~~~itvfSa~~y~~~~~n~ga~l~~~~~~~~~~~~~~~ 761 (810)
|++++++||++||+++||||||++++||+++++++|||||||||||+.++|+||+|++++++.++|++++|
T Consensus 241 g~~~~~~Fl~~n~l~~iiRgHe~~~~G~~~~~~~~~iTvfSa~~y~~~~~n~~ai~~i~~~~~~~~~~~~~ 311 (311)
T cd07419 241 GPDRVHRFLEENDLQMIIRAHECVMDGFERFAQGKLITLFSATNYCGTAGNAGAILVLGRDLTIIPKLIHP 311 (311)
T ss_pred CHHHHHHHHHHCCCeEEEEechhhhCCeEEeCCCeEEEEecCCcccCCCCceEEEEEECCCCcEeEEEeCC
Confidence 99999999999999999999999999999999999999999999999999999999999999999999987
No 7
>PTZ00244 serine/threonine-protein phosphatase PP1; Provisional
Probab=100.00 E-value=1.4e-68 Score=566.59 Aligned_cols=291 Identities=41% Similarity=0.778 Sum_probs=270.0
Q ss_pred hHHHHHHHHHhCCCCCCCCCCcccccCHHHHHHHHHHHHHHHhcCCceEeecCCeEEEecCCCCHHHHHHHHHHhCCCCC
Q 003577 454 GLHKKIISTLLRPRNWKAPANRRFFLDSYEVGELCYAAEQIFMQEPTVLQLRAPVKVFGDLHGQFGDLMRLFDEYGFPST 533 (810)
Q Consensus 454 ~~~~~~i~~l~~~~~~~~~~~~~~~~~~~~i~~l~~~~~~~~~~e~~~l~~~~pi~vvGDiHG~~~~L~~~l~~~~~~~~ 533 (810)
++++++|..+++...+. ......++.++|.+||++|+++|++||+++++.+|++|||||||||.+|+++|+..++++.
T Consensus 2 ~~~~~~i~~~~~~~~~~--~~~~~~i~~~~i~~l~~~~~~il~~e~~ll~i~~p~~ViGDIHG~~~~L~~l~~~~~~~~~ 79 (294)
T PTZ00244 2 SLVQTLIEKMLTVKGNR--TQRQILIREEDIRAVLTEVREIFMSQPMLLEIRPPVRVCGDTHGQYYDLLRIFEKCGFPPY 79 (294)
T ss_pred chHHHHHHHHHhcccCC--CccccCCCHHHHHHHHHHHHHHHHhCCCeEeccCCceeeccCCCCHHHHHHHHHHcCCCCc
Confidence 45688888888865433 2233468999999999999999999999999999999999999999999999999999876
Q ss_pred CCCcceeeEEEeccccCCCCChHHHHHHHHHHhhcCCCcEEEecCCccccchhhccCChHHHHHhhCCCCcccccccccc
Q 003577 534 AGDITYIDYLFLGDYVDRGQHSLETITLLLALKIEYPENVHLIRGNHEAADINALFGFRLECIERMGENDGIWAWTRFNQ 613 (810)
Q Consensus 534 ~~~~~~~~~vfLGDyVDRG~~s~evl~ll~~lk~~~p~~v~llrGNHE~~~~~~~~gf~~e~~~~~~~~~~~~~~~~~~~ 613 (810)
. +|||||||||||++|+||+.+|+++|+.+|.++++||||||.+.++..|||.+|+..+|+ ..+|+.+++
T Consensus 80 ~------~~lfLGDyVDRG~~s~evl~ll~~lk~~~p~~v~llrGNHE~~~~~~~~gf~~e~~~~y~----~~l~~~~~~ 149 (294)
T PTZ00244 80 S------NYLFLGDYVDRGKHSVETITLQFCYKIVYPENFFLLRGNHECASINKMYGFFDDVKRRYN----IKLFKAFTD 149 (294)
T ss_pred c------cEEEeeeEecCCCCHHHHHHHHHHHhhccCCeEEEEecccchHhHhhccChHHHHHHHhh----HHHHHHHHH
Confidence 5 899999999999999999999999999999999999999999999999999999999995 468999999
Q ss_pred ccccCceeEEEcCcEEEecCCcCCcccchhhhhcccCCcccCCCchhhhhhccCCCCCCCCCCCCCcCCCCCceeeeCHH
Q 003577 614 LFNCLPLAALIEKKIICMHGGIGRSIHSVEQIEKLERPITMDAGSIILMDLLWSDPTENDSIEGLRPNARGPGLVTFGPD 693 (810)
Q Consensus 614 ~f~~lPla~~i~~~il~vHgGi~~~~~~~~~i~~~~rp~~~~~~~~~~~dllWsdP~~~~~~~~~~~~~rg~~~~~fg~~ 693 (810)
+|+.||++|++++++|||||||+|.+.++++|+.++||.+.+..+ +++|+|||||.. ...+|.+|+||.| +.||++
T Consensus 150 ~f~~lPlaaii~~~il~vHgGi~p~~~~l~~i~~i~rp~~~~~~~-~~~dllWsDP~~--~~~~~~~~~Rg~g-~~fg~~ 225 (294)
T PTZ00244 150 VFNTMPVCCVISEKIICMHGGLSPDLTSLASVNEIERPCDVPDRG-ILCDLLWADPED--EVRGFLESDRGVS-YLFGED 225 (294)
T ss_pred HHHhCchheEecCeeEEEcCCCCchhhHHHHhhhhccccCCCccc-hhheeeecCccc--ccCCCCcCCCCCc-cccCHH
Confidence 999999999999999999999999999999999999999887655 899999999975 3568999999999 789999
Q ss_pred HHHHHHHhcCCcEEEEeccccccceEEecCCeEEEEEccCCCCCCCCCeEEEEEEcCcceEEEEEec
Q 003577 694 RVSDFCKRNKLQLIIRAHECVMDGFERFAQGQLITLFSATNYCGTANNAGAILVVGRGLVVVPKLIH 760 (810)
Q Consensus 694 ~~~~fl~~~~l~~iiR~H~~~~~G~~~~~~~~~itvfSa~~y~~~~~n~ga~l~~~~~~~~~~~~~~ 760 (810)
++++||++||+++||||||++++||+++++++||||||||||||..+|+||+|.|++++++.++.+.
T Consensus 226 ~~~~Fl~~n~l~~iiR~Hq~~~~G~~~~~~~~~iTvfSa~~Y~~~~~N~~a~l~i~~~~~~~f~~~~ 292 (294)
T PTZ00244 226 IVNDFLDMVDMDLIVRAHQVMERGYGFFASRQLVTVFSAPNYCGEFDNDAAVMNIDDKLQCSFLIIP 292 (294)
T ss_pred HHHHHHHHcCCcEEEEcCccccCceEEcCCCeEEEEeCCccccCCCCceEEEEEECCCCcEeEEEee
Confidence 9999999999999999999999999999999999999999999999999999999999999888763
No 8
>cd07415 MPP_PP2A_PP4_PP6 PP2A, PP4, and PP6 phosphoprotein phosphatases, metallophosphatase domain. PP2A-like family of phosphoprotein phosphatases (PPP's) including PP4 and PP6. PP2A (Protein phosphatase 2A) is a critical regulator of many cellular activities. PP2A comprises about 1% of total cellular proteins. PP2A, together with protein phosphatase 1 (PP1), accounts for more than 90% of all serine/threonine phosphatase activities in most cells and tissues. The PP2A subunit in addition to having a catalytic domain homologous to PP1, has a unique C-terminal tail, containing a motif that is conserved in the catalytic subunits of all PP2A-like phosphatases including PP4 and PP6, and has an important role in PP2A regulation. The PP2A-like family of phosphatases all share a similar heterotrimeric architecture, that includes: a 65kDa scaffolding subunit (A), a 36kDa catalytic subunit (C), and one of 18 regulatory subunits (B). The PPP (phosphoprotein phosphatase) family, to which PP2
Probab=100.00 E-value=3.4e-68 Score=562.77 Aligned_cols=283 Identities=42% Similarity=0.754 Sum_probs=266.2
Q ss_pred HHHHHHHHhCCCCCCCCCCcccccCHHHHHHHHHHHHHHHhcCCceEeecCCeEEEecCCCCHHHHHHHHHHhCCCCCCC
Q 003577 456 HKKIISTLLRPRNWKAPANRRFFLDSYEVGELCYAAEQIFMQEPTVLQLRAPVKVFGDLHGQFGDLMRLFDEYGFPSTAG 535 (810)
Q Consensus 456 ~~~~i~~l~~~~~~~~~~~~~~~~~~~~i~~l~~~~~~~~~~e~~~l~~~~pi~vvGDiHG~~~~L~~~l~~~~~~~~~~ 535 (810)
++++|..+++.. .|+++++.+||++|+++|++||+++++..|++||||||||+.+|+++|+..++++..
T Consensus 2 ~~~~~~~~~~~~----------~l~~~~~~~l~~~~~~il~~e~~~~~i~~~i~vvGDIHG~~~dL~~ll~~~~~~~~~- 70 (285)
T cd07415 2 LDKWIEQLKKCE----------LLPESEVKSLCEKAKEILVKESNVQRVRSPVTVCGDIHGQFYDLLELFRVGGDPPDT- 70 (285)
T ss_pred HHHHHHHHHccC----------CCCHHHHHHHHHHHHHHHHhCCCEEecCCCEEEEEeCCCCHHHHHHHHHHcCCCCCC-
Confidence 366888887642 478999999999999999999999999999999999999999999999999987765
Q ss_pred CcceeeEEEeccccCCCCChHHHHHHHHHHhhcCCCcEEEecCCccccchhhccCChHHHHHhhCCCCcccccccccccc
Q 003577 536 DITYIDYLFLGDYVDRGQHSLETITLLLALKIEYPENVHLIRGNHEAADINALFGFRLECIERMGENDGIWAWTRFNQLF 615 (810)
Q Consensus 536 ~~~~~~~vfLGDyVDRG~~s~evl~ll~~lk~~~p~~v~llrGNHE~~~~~~~~gf~~e~~~~~~~~~~~~~~~~~~~~f 615 (810)
+|||||||||||++|+||+.+|++||+.+|.++++||||||.+.++..|||..||..+|+. ..+|+.++++|
T Consensus 71 -----~~lfLGDyVDRG~~s~evl~ll~~lk~~~p~~v~llrGNHE~~~~~~~ygf~~e~~~~y~~---~~l~~~~~~~f 142 (285)
T cd07415 71 -----NYLFLGDYVDRGYYSVETFLLLLALKVRYPDRITLLRGNHESRQITQVYGFYDECLRKYGN---ANVWKYCTDLF 142 (285)
T ss_pred -----eEEEEeEECCCCcCHHHHHHHHHHHhhcCCCcEEEEecccchHhhhhhcchhHHHHHhcCc---hHHHHHHHHHH
Confidence 8999999999999999999999999999999999999999999999999999999999964 36899999999
Q ss_pred ccCceeEEEcCcEEEecCCcCCcccchhhhhcccCCcccCCCchhhhhhccCCCCCCCCCCCCCcCCCCCceeeeCHHHH
Q 003577 616 NCLPLAALIEKKIICMHGGIGRSIHSVEQIEKLERPITMDAGSIILMDLLWSDPTENDSIEGLRPNARGPGLVTFGPDRV 695 (810)
Q Consensus 616 ~~lPla~~i~~~il~vHgGi~~~~~~~~~i~~~~rp~~~~~~~~~~~dllWsdP~~~~~~~~~~~~~rg~~~~~fg~~~~ 695 (810)
++||++|++++++|||||||+|.+.++++|+.++||.+++..+ +++|+|||||... .+|.+|+||.| +.||++++
T Consensus 143 ~~lPlaaii~~~i~cvHgGi~p~~~~~~~i~~i~r~~~~~~~~-~~~dllWsDP~~~---~~~~~~~Rg~g-~~fg~~~~ 217 (285)
T cd07415 143 DYLPLAALIDNQIFCVHGGLSPSIDTLDQIRAIDRFQEVPHEG-PMCDLLWSDPDDI---EGWGISPRGAG-YLFGQDVV 217 (285)
T ss_pred HHhHHHhEeCCeEEEEcCCCCCCcccHHHhhcccCCCCCCCCC-CccceEecCCCcc---CCCCcCCCCCc-cccCHHHH
Confidence 9999999999999999999999999999999999999887665 7899999999863 68999999999 78999999
Q ss_pred HHHHHhcCCcEEEEeccccccceEEecCCeEEEEEccCCCCCCCCCeEEEEEEcCcceEEEEEecCC
Q 003577 696 SDFCKRNKLQLIIRAHECVMDGFERFAQGQLITLFSATNYCGTANNAGAILVVGRGLVVVPKLIHPL 762 (810)
Q Consensus 696 ~~fl~~~~l~~iiR~H~~~~~G~~~~~~~~~itvfSa~~y~~~~~n~ga~l~~~~~~~~~~~~~~~~ 762 (810)
++||++||+++||||||++++||+++++++|+|||||||||+..+|+||+|.|++++++.++.+.|.
T Consensus 218 ~~Fl~~n~l~~iiR~He~~~~G~~~~~~~~~~TvfSa~~y~~~~~n~~a~l~i~~~~~~~~~~~~~~ 284 (285)
T cd07415 218 EEFNHNNGLTLICRAHQLVMEGYQWMFDDKLVTVWSAPNYCYRCGNVASIMELDEHLKRSFKVFEAA 284 (285)
T ss_pred HHHHHHCCCeEEEEcCccccceEEEecCCcEEEEecCCcccCCCCceEEEEEECCCCcEeEEEeccC
Confidence 9999999999999999999999999999999999999999999999999999999999999988774
No 9
>cd07414 MPP_PP1_PPKL PP1, PPKL (PP1 and kelch-like) enzymes, and related proteins, metallophosphatase domain. PP1 (protein phosphatase type 1) is a serine/threonine phosphatase that regulates many cellular processes including: cell-cycle progression, protein synthesis, muscle contraction, carbohydrate metabolism, transcription and neuronal signaling, through its interaction with at least 180 known targeting proteins. PP1 occurs in all tissues and regulates many pathways, ranging from cell-cycle progression to carbohydrate metabolism. Also included here are the PPKL (PP1 and kelch-like) enzymes including the PPQ, PPZ1, and PPZ2 fungal phosphatases. These PPKLs have a large N-terminal kelch repeat in addition to a C-terminal phosphoesterase domain. The PPP (phosphoprotein phosphatase) family, to which PP1 belongs, is one of two known protein phosphatase families specific for serine and threonine. The PPP family also includes: PP2A, PP2B (calcineurin), PP4, PP5, PP6, PP7, Bsu1, Rdg
Probab=100.00 E-value=2.8e-68 Score=565.51 Aligned_cols=290 Identities=49% Similarity=0.900 Sum_probs=269.8
Q ss_pred HHHHHHHHhCCCCCCCCCCcccccCHHHHHHHHHHHHHHHhcCCceEeecCCeEEEecCCCCHHHHHHHHHHhCCCCCCC
Q 003577 456 HKKIISTLLRPRNWKAPANRRFFLDSYEVGELCYAAEQIFMQEPTVLQLRAPVKVFGDLHGQFGDLMRLFDEYGFPSTAG 535 (810)
Q Consensus 456 ~~~~i~~l~~~~~~~~~~~~~~~~~~~~i~~l~~~~~~~~~~e~~~l~~~~pi~vvGDiHG~~~~L~~~l~~~~~~~~~~ 535 (810)
++++|+.+++.+.++. .....|+++++.+||++|+++|++||+++++++|++||||||||+.+|+++|+..++++..
T Consensus 2 ~~~~i~~~~~~~~~~~--~~~~~~~~~~i~~l~~~~~~il~~ep~~l~i~~~i~viGDIHG~~~~L~~l~~~~~~~~~~- 78 (293)
T cd07414 2 IDSIIERLLEVRGSRP--GKNVQLTEAEIRGLCLKSREIFLSQPILLELEAPLKICGDIHGQYYDLLRLFEYGGFPPES- 78 (293)
T ss_pred HHHHHHHHHhccccCC--cccCCCCHHHHHHHHHHHHHHHHhCCCeEecCCceEEEEecCCCHHHHHHHHHhcCCCCcc-
Confidence 3668888887665443 2334689999999999999999999999999999999999999999999999999998765
Q ss_pred CcceeeEEEeccccCCCCChHHHHHHHHHHhhcCCCcEEEecCCccccchhhccCChHHHHHhhCCCCcccccccccccc
Q 003577 536 DITYIDYLFLGDYVDRGQHSLETITLLLALKIEYPENVHLIRGNHEAADINALFGFRLECIERMGENDGIWAWTRFNQLF 615 (810)
Q Consensus 536 ~~~~~~~vfLGDyVDRG~~s~evl~ll~~lk~~~p~~v~llrGNHE~~~~~~~~gf~~e~~~~~~~~~~~~~~~~~~~~f 615 (810)
+|||||||||||++|+|++.+|+++|+.+|.++++||||||.+.++..|||..|+..+|+ ..+|..+.++|
T Consensus 79 -----~~lfLGDyVDRG~~s~e~i~ll~~lk~~~p~~i~llrGNHE~~~~~~~~gf~~e~~~~y~----~~l~~~~~~~f 149 (293)
T cd07414 79 -----NYLFLGDYVDRGKQSLETICLLLAYKIKYPENFFLLRGNHECASINRIYGFYDECKRRYN----IKLWKTFTDCF 149 (293)
T ss_pred -----eEEEEeeEecCCCCcHHHHHHHHHhhhhCCCcEEEEecccchhhHhhhcchhhHHHHhhh----HHHHHHHHHHH
Confidence 899999999999999999999999999999999999999999999999999999999984 46899999999
Q ss_pred ccCceeEEEcCcEEEecCCcCCcccchhhhhcccCCcccCCCchhhhhhccCCCCCCCCCCCCCcCCCCCceeeeCHHHH
Q 003577 616 NCLPLAALIEKKIICMHGGIGRSIHSVEQIEKLERPITMDAGSIILMDLLWSDPTENDSIEGLRPNARGPGLVTFGPDRV 695 (810)
Q Consensus 616 ~~lPla~~i~~~il~vHgGi~~~~~~~~~i~~~~rp~~~~~~~~~~~dllWsdP~~~~~~~~~~~~~rg~~~~~fg~~~~ 695 (810)
++||++|++++++||||||++|.+.++++|+.++||.+.+..+ +++|+|||||.. ...+|.+|+||.| +.||++++
T Consensus 150 ~~lPlaa~i~~~i~cvHgGi~p~~~~l~~i~~i~r~~~~~~~~-~~~dllWsDP~~--~~~~~~~~~Rg~g-~~fg~~~~ 225 (293)
T cd07414 150 NCLPVAAIIDEKIFCMHGGLSPDLQSMEQIRRIMRPTDVPDQG-LLCDLLWSDPDK--DVQGWGENDRGVS-FTFGKDVV 225 (293)
T ss_pred HHhHHHHhhCCcEEEEccCCCcccCcHHHHhcccCCCCCCchh-hHhhhhccCccc--ccCCCccCCCCcc-eecCHHHH
Confidence 9999999999999999999999999999999999999887655 899999999985 3578999999999 68999999
Q ss_pred HHHHHhcCCcEEEEeccccccceEEecCCeEEEEEccCCCCCCCCCeEEEEEEcCcceEEEEEecC
Q 003577 696 SDFCKRNKLQLIIRAHECVMDGFERFAQGQLITLFSATNYCGTANNAGAILVVGRGLVVVPKLIHP 761 (810)
Q Consensus 696 ~~fl~~~~l~~iiR~H~~~~~G~~~~~~~~~itvfSa~~y~~~~~n~ga~l~~~~~~~~~~~~~~~ 761 (810)
++||++||+++||||||++++||+++++++||||||||||||..+|+||+|.|++++.+.++.|.|
T Consensus 226 ~~Fl~~n~l~~iiR~He~~~~G~~~~~~~~~iTvfSa~~Y~~~~~N~~a~l~i~~~~~~~~~~~~~ 291 (293)
T cd07414 226 AKFLNKHDLDLICRAHQVVEDGYEFFAKRQLVTLFSAPNYCGEFDNAGAMMSVDETLMCSFQILKP 291 (293)
T ss_pred HHHHHHcCCeEEEECCccccCeEEEeCCCcEEEEecCCcccCCCCceEEEEEECCCCcEEEEEecC
Confidence 999999999999999999999999999999999999999999999999999999999999998875
No 10
>PTZ00239 serine/threonine protein phosphatase 2A; Provisional
Probab=100.00 E-value=9.2e-68 Score=561.93 Aligned_cols=285 Identities=41% Similarity=0.769 Sum_probs=265.0
Q ss_pred HHHHHHHHhCCCCCCCCCCcccccCHHHHHHHHHHHHHHHhcCCceEeecCCeEEEecCCCCHHHHHHHHHHhCCCCCCC
Q 003577 456 HKKIISTLLRPRNWKAPANRRFFLDSYEVGELCYAAEQIFMQEPTVLQLRAPVKVFGDLHGQFGDLMRLFDEYGFPSTAG 535 (810)
Q Consensus 456 ~~~~i~~l~~~~~~~~~~~~~~~~~~~~i~~l~~~~~~~~~~e~~~l~~~~pi~vvGDiHG~~~~L~~~l~~~~~~~~~~ 535 (810)
++++|..+++.. .|+++++.+||++|+++|++||+++++.+|++||||||||+.+|+++|+..+.++..
T Consensus 3 ~~~~~~~~~~~~----------~l~~~~i~~l~~~~~~il~~e~~~~~i~~~i~vvGDIHG~~~~L~~l~~~~~~~~~~- 71 (303)
T PTZ00239 3 IDRHIATLLNGG----------CLPERDLKLICERAKEIFLEESNVQPVRAPVNVCGDIHGQFYDLQALFKEGGDIPNA- 71 (303)
T ss_pred HHHHHHHHHccC----------CCCHHHHHHHHHHHHHHHHhCCCeEecCCCEEEEEeCCCCHHHHHHHHHhcCCCCCc-
Confidence 467888887642 478999999999999999999999999999999999999999999999999987655
Q ss_pred CcceeeEEEeccccCCCCChHHHHHHHHHHhhcCCCcEEEecCCccccchhhccCChHHHHHhhCCCCcccccccccccc
Q 003577 536 DITYIDYLFLGDYVDRGQHSLETITLLLALKIEYPENVHLIRGNHEAADINALFGFRLECIERMGENDGIWAWTRFNQLF 615 (810)
Q Consensus 536 ~~~~~~~vfLGDyVDRG~~s~evl~ll~~lk~~~p~~v~llrGNHE~~~~~~~~gf~~e~~~~~~~~~~~~~~~~~~~~f 615 (810)
+|||||||||||++|+||+.+|+++|+.+|.++++||||||.+.++..|||..|+..+|+.. .+|+.++++|
T Consensus 72 -----~~lfLGDyVDRG~~s~evl~ll~~lk~~~p~~v~llrGNHE~~~~~~~~gf~~e~~~ky~~~---~~~~~~~~~f 143 (303)
T PTZ00239 72 -----NYIFIGDFVDRGYNSVETMEYLLCLKVKYPGNITLLRGNHESRQCTQVYGFYEEILRKYGNS---NPWRLFMDVF 143 (303)
T ss_pred -----eEEEeeeEcCCCCCHHHHHHHHHHhhhcCCCcEEEEecccchHHHhhhcChHHHHHHHhcCh---hHHHHHHHHH
Confidence 89999999999999999999999999999999999999999999999999999999999752 5899999999
Q ss_pred ccCceeEEEcCcEEEecCCcCCcccchhhhhcccCCcccCCCchhhhhhccCCCCCCCCCCCCCcCCCCCceeeeCHHHH
Q 003577 616 NCLPLAALIEKKIICMHGGIGRSIHSVEQIEKLERPITMDAGSIILMDLLWSDPTENDSIEGLRPNARGPGLVTFGPDRV 695 (810)
Q Consensus 616 ~~lPla~~i~~~il~vHgGi~~~~~~~~~i~~~~rp~~~~~~~~~~~dllWsdP~~~~~~~~~~~~~rg~~~~~fg~~~~ 695 (810)
++||++|++++++|||||||+|.+.++++|+.++||.+++..+ .++|+|||||.+ ..+|.+|+||.| +.||++++
T Consensus 144 ~~LPlaaii~~~i~cvHgGi~p~~~~l~~i~~i~r~~~~~~~~-~~~dllWsDP~~---~~~~~~~~Rg~g-~~fg~~~~ 218 (303)
T PTZ00239 144 DCLPLAALIEGQILCVHGGLSPDMRTIDQIRTIDRKIEIPHEG-PFCDLMWSDPEE---VEYWAVNSRGAG-YLFGAKVT 218 (303)
T ss_pred HhCchheEEcCeEEEEcCccCcccccHhhhccccCCCCCCCCC-CceeeEecCccc---cCCCccCCCCCc-cccCHHHH
Confidence 9999999999999999999999999999999999999987766 789999999975 468999999999 78999999
Q ss_pred HHHHHhcCCcEEEEeccccccceEEecC-CeEEEEEccCCCCCCCCCeEEEEEEcCcceEEEEEecCCCC
Q 003577 696 SDFCKRNKLQLIIRAHECVMDGFERFAQ-GQLITLFSATNYCGTANNAGAILVVGRGLVVVPKLIHPLPP 764 (810)
Q Consensus 696 ~~fl~~~~l~~iiR~H~~~~~G~~~~~~-~~~itvfSa~~y~~~~~n~ga~l~~~~~~~~~~~~~~~~~~ 764 (810)
++||++||+++||||||++++||+++++ ++|||||||||||+..+|+||+|.+++++++.++.|.|.+.
T Consensus 219 ~~Fl~~n~l~~iiR~He~~~~G~~~~~~~~~~iTvfSa~~Y~~~~~N~~ail~i~~~~~~~~~~~~~~~~ 288 (303)
T PTZ00239 219 KEFCRLNDLTLICRAHQLVMEGYKYWFPDQNLVTVWSAPNYCYRCGNIASILCLDENLQQTWKTFKEVPE 288 (303)
T ss_pred HHHHHHCCCcEEEEcChhhccceEEEeCCCeEEEEECCCcccCCCCceEEEEEECCCCcEeeEEeeCCCc
Confidence 9999999999999999999999998765 45999999999999999999999999999999999988654
No 11
>cd07417 MPP_PP5_C PP5, C-terminal metallophosphatase domain. Serine/threonine protein phosphatase-5 (PP5) is a member of the PPP gene family of protein phosphatases that is highly conserved among eukaryotes and widely expressed in mammalian tissues. PP5 has a C-terminal phosphatase domain and an extended N-terminal TPR (tetratricopeptide repeat) domain containing three TPR motifs. The PPP (phosphoprotein phosphatase) family, to which PP5 belongs, is one of two known protein phosphatase families specific for serine and threonine. The PPP family also includes: PP1, PP2A, PP2B (calcineurin), PP4, PP6, PP7, Bsu1, RdgC, PrpE, PrpA/PrpB, and ApA4 hydrolase. The PPP catalytic domain is defined by three conserved motifs (-GDXHG-, -GDXVDRG- and -GNHE-). The PPP enzyme family is ancient with members found in all eukaryotes, and in most bacterial and archeal genomes. Dephosphorylation of phosphoserines and phosphothreonines on target proteins plays a central role in the regulation of many cel
Probab=100.00 E-value=1.1e-66 Score=557.51 Aligned_cols=291 Identities=35% Similarity=0.639 Sum_probs=268.0
Q ss_pred chhHHHHHHHHHhCCCCCCCCCCcccccCHHHHHHHHHHHHHHHhcCCceEeecCC----eEEEecCCCCHHHHHHHHHH
Q 003577 452 PQGLHKKIISTLLRPRNWKAPANRRFFLDSYEVGELCYAAEQIFMQEPTVLQLRAP----VKVFGDLHGQFGDLMRLFDE 527 (810)
Q Consensus 452 ~~~~~~~~i~~l~~~~~~~~~~~~~~~~~~~~i~~l~~~~~~~~~~e~~~l~~~~p----i~vvGDiHG~~~~L~~~l~~ 527 (810)
+..+++++++.+.+.+ .|+.+++.+||++|.++|++||+++++..| ++|||||||||.+|+++|+.
T Consensus 12 ~~~~~~~~~~~~~~~~----------~l~~~~~~~l~~~~~~il~~ep~l~~i~~p~~~~~~VvGDIHG~~~dL~~ll~~ 81 (316)
T cd07417 12 TLEFVKEMIEWFKDQK----------KLHKKYAYQILLQVKELLKKLPSLVEITIPEGEKITVCGDTHGQFYDLLNIFEL 81 (316)
T ss_pred CHHHHHHHHHHHHccC----------CCCHHHHHHHHHHHHHHHHhCCcceeccCCCCceeEEeecccCCHHHHHHHHHh
Confidence 4577889999988753 478999999999999999999999999877 99999999999999999999
Q ss_pred hCCCCCCCCcceeeEEEeccccCCCCChHHHHHHHHHHhhcCCCcEEEecCCccccchhhccCChHHHHHhhCCCCcccc
Q 003577 528 YGFPSTAGDITYIDYLFLGDYVDRGQHSLETITLLLALKIEYPENVHLIRGNHEAADINALFGFRLECIERMGENDGIWA 607 (810)
Q Consensus 528 ~~~~~~~~~~~~~~~vfLGDyVDRG~~s~evl~ll~~lk~~~p~~v~llrGNHE~~~~~~~~gf~~e~~~~~~~~~~~~~ 607 (810)
.|+++..+ +|||||||||||++|+||+.+|++||+.+|+++++||||||.+.++..|||..|+..+|+ ..+
T Consensus 82 ~g~~~~~~-----~ylFLGDyVDRG~~S~Evl~ll~~lki~~p~~v~lLRGNHE~~~~~~~~gf~~e~~~k~~----~~l 152 (316)
T cd07417 82 NGLPSETN-----PYLFNGDFVDRGSFSVEVILTLFAFKLLYPNHFHLNRGNHETDNMNKMYGFEGEVKAKYN----EQM 152 (316)
T ss_pred cCCCCccC-----eEEEEeeEecCCCChHHHHHHHHHhhhccCCceEEEeeccchHHHHHHhhhcchhhhccc----HHH
Confidence 99986542 799999999999999999999999999999999999999999999999999999999885 468
Q ss_pred ccccccccccCceeEEEcCcEEEecCCc-CCcccchhhhhcccCCcccCCCchhhhhhccCCCCCCCCCCCCCcCCCCCc
Q 003577 608 WTRFNQLFNCLPLAALIEKKIICMHGGI-GRSIHSVEQIEKLERPITMDAGSIILMDLLWSDPTENDSIEGLRPNARGPG 686 (810)
Q Consensus 608 ~~~~~~~f~~lPla~~i~~~il~vHgGi-~~~~~~~~~i~~~~rp~~~~~~~~~~~dllWsdP~~~~~~~~~~~~~rg~~ 686 (810)
|+.+.++|++||+++++++++||||||| ++...++++|++++||.+.+..+ +++|+|||||.+ ..+|.+|+||.|
T Consensus 153 ~~~~~~~f~~LPlaaii~~~~~~vHgGi~~~~~~~l~~i~~i~r~~~~~~~~-~~~dllWsDP~~---~~~~~~s~Rg~g 228 (316)
T cd07417 153 FDLFSEVFNWLPLAHLINGKVLVVHGGLFSDDGVTLDDIRKIDRFRQPPDSG-LMCELLWSDPQP---QPGRSPSKRGVG 228 (316)
T ss_pred HHHHHHHHHhchHhheeCCeEEEEccccccCCCccHHHhhcccCCCCCCccc-cceeeeecCCCC---CCCCCccCCCCc
Confidence 9999999999999999999999999999 56788999999999998776554 899999999985 358999999999
Q ss_pred eeeeCHHHHHHHHHhcCCcEEEEeccccccceEEecCCeEEEEEccCCCCCCCCCeEEEEEEcC-cceEEEEEecCCCCC
Q 003577 687 LVTFGPDRVSDFCKRNKLQLIIRAHECVMDGFERFAQGQLITLFSATNYCGTANNAGAILVVGR-GLVVVPKLIHPLPPP 765 (810)
Q Consensus 687 ~~~fg~~~~~~fl~~~~l~~iiR~H~~~~~G~~~~~~~~~itvfSa~~y~~~~~n~ga~l~~~~-~~~~~~~~~~~~~~~ 765 (810)
+.||++++++||++||+++||||||++++||+++++++|+|||||||||+..+|+||+|.|++ ++++.++.|.+.+..
T Consensus 229 -~~fg~~~~~~Fl~~n~l~~iiR~He~~~~G~~~~~~~~~~TvfSa~~Y~~~~~N~ga~~~i~~~~~~~~~~~~~~~~~~ 307 (316)
T cd07417 229 -CQFGPDVTKRFLEENNLEYIIRSHEVKDEGYEVEHDGKCITVFSAPNYCDQMGNKGAFIRITGSDLKPKFTQFEAVPHP 307 (316)
T ss_pred -eEeCHHHHHHHHHHcCCcEEEECCcccceeEEEecCCeEEEEeCCccccCCCCcceEEEEEeCCCceeeeEeccCCCCC
Confidence 699999999999999999999999999999999999999999999999999999999999999 899999999876544
Q ss_pred C
Q 003577 766 L 766 (810)
Q Consensus 766 ~ 766 (810)
.
T Consensus 308 ~ 308 (316)
T cd07417 308 N 308 (316)
T ss_pred C
Confidence 3
No 12
>cd07416 MPP_PP2B PP2B, metallophosphatase domain. PP2B (calcineurin) is a unique serine/threonine protein phosphatase in its regulation by a second messenger (calcium and calmodulin). PP2B is involved in many biological processes including immune responses, the second messenger cAMP pathway, sodium/potassium ion transport in the nephron, cell cycle progression in lower eukaryotes, cardiac hypertrophy, and memory formation. PP2B is highly conserved from yeast to humans, but is absent from plants. PP2B is a heterodimer consisting of a catalytic subunit (CnA) and a regulatory subunit (CnB); CnB contains four Ca2+ binding motifs referred to as EF hands. The PPP (phosphoprotein phosphatase) family, to which PP2B belongs, is one of two known protein phosphatase families specific for serine and threonine. The PPP family also includes: PP1, PP2A, PP4, PP5, PP6, PP7, Bsu1, RdgC, PrpE, PrpA/PrpB, and ApA4 hydrolase. The PPP catalytic domain is defined by three conserved motifs (-GDXHG-, -G
Probab=100.00 E-value=7.2e-66 Score=550.80 Aligned_cols=274 Identities=38% Similarity=0.658 Sum_probs=253.5
Q ss_pred ccCHHHHHHHHHHHHHHHhcCCceEeecCCeEEEecCCCCHHHHHHHHHHhCCCCCCCCcceeeEEEeccccCCCCChHH
Q 003577 478 FLDSYEVGELCYAAEQIFMQEPTVLQLRAPVKVFGDLHGQFGDLMRLFDEYGFPSTAGDITYIDYLFLGDYVDRGQHSLE 557 (810)
Q Consensus 478 ~~~~~~i~~l~~~~~~~~~~e~~~l~~~~pi~vvGDiHG~~~~L~~~l~~~~~~~~~~~~~~~~~vfLGDyVDRG~~s~e 557 (810)
.|+++++.+||++|+++|++||+++++.+|++||||||||+.+|.++|+..+.++.. +|||||||||||++|+|
T Consensus 15 ~l~~~~i~~l~~~~~~il~~e~~l~~i~~~i~ViGDIHG~~~dL~~l~~~~g~~~~~------~ylFLGDyVDRG~~s~E 88 (305)
T cd07416 15 RLSEEDALRIITEGAEILRQEPNLLRIEAPVTVCGDIHGQFYDLLKLFEVGGSPANT------RYLFLGDYVDRGYFSIE 88 (305)
T ss_pred CCCHHHHHHHHHHHHHHHHhCCCeEccCCCEEEEEeCCCCHHHHHHHHHhcCCCCCc------eEEEECCccCCCCChHH
Confidence 378999999999999999999999999999999999999999999999999988765 89999999999999999
Q ss_pred HHHHHHHHhhcCCCcEEEecCCccccchhhccCChHHHHHhhCCCCccccccccccccccCceeEEEcCcEEEecCCcCC
Q 003577 558 TITLLLALKIEYPENVHLIRGNHEAADINALFGFRLECIERMGENDGIWAWTRFNQLFNCLPLAALIEKKIICMHGGIGR 637 (810)
Q Consensus 558 vl~ll~~lk~~~p~~v~llrGNHE~~~~~~~~gf~~e~~~~~~~~~~~~~~~~~~~~f~~lPla~~i~~~il~vHgGi~~ 637 (810)
|+.+|++||+.+|+++++||||||.+.++..|||..|+..+|+ ..+|..++++|+.||+++++++++|||||||+|
T Consensus 89 vi~lL~~lki~~p~~v~lLRGNHE~~~l~~~~gf~~e~~~~y~----~~l~~~~~~~f~~LPlaaii~~~i~~vHGGi~p 164 (305)
T cd07416 89 CVLYLWALKILYPKTLFLLRGNHECRHLTEYFTFKQECKIKYS----ERVYDACMEAFDCLPLAALMNQQFLCVHGGLSP 164 (305)
T ss_pred HHHHHHHHHhhcCCCEEEEeCCCcHHHHHHhhCchhHHHHhcc----HHHHHHHHHHHhhccceeEEcCCEEEEcCCCCc
Confidence 9999999999999999999999999999999999999999884 468999999999999999999999999999999
Q ss_pred cccchhhhhcccCCcccCCCchhhhhhccCCCCCCCCC----CCCCcC-CCCCceeeeCHHHHHHHHHhcCCcEEEEecc
Q 003577 638 SIHSVEQIEKLERPITMDAGSIILMDLLWSDPTENDSI----EGLRPN-ARGPGLVTFGPDRVSDFCKRNKLQLIIRAHE 712 (810)
Q Consensus 638 ~~~~~~~i~~~~rp~~~~~~~~~~~dllWsdP~~~~~~----~~~~~~-~rg~~~~~fg~~~~~~fl~~~~l~~iiR~H~ 712 (810)
.+.++++|++++||.+.+..+ +++|+|||||...... .+|.+| .||.| +.||++++++||++||+++||||||
T Consensus 165 ~~~~l~~i~~i~r~~~~~~~~-~~~dllWsDP~~~~~~~~~~~~~~~~~~Rg~g-~~fG~~~~~~Fl~~n~l~~iiR~He 242 (305)
T cd07416 165 ELKTLDDIRKLDRFREPPAFG-PMCDLLWSDPLEDFGNEKTQEHFVHNTVRGCS-YFYSYRAVCEFLQKNNLLSIIRAHE 242 (305)
T ss_pred ccccHHHhcccCCCCCCCCCC-cceeeeecCcccccccccccccccccCCCCCc-eecCHHHHHHHHHHcCCeEEEEecc
Confidence 999999999999998877655 7899999999764321 357776 89999 7999999999999999999999999
Q ss_pred ccccceEEecCC------eEEEEEccCCCCCCCCCeEEEEEEcCcceEEEEEecCCCC
Q 003577 713 CVMDGFERFAQG------QLITLFSATNYCGTANNAGAILVVGRGLVVVPKLIHPLPP 764 (810)
Q Consensus 713 ~~~~G~~~~~~~------~~itvfSa~~y~~~~~n~ga~l~~~~~~~~~~~~~~~~~~ 764 (810)
++++||++++++ +||||||||||||.++|+||+|.++++. +.++.+.+.|-
T Consensus 243 ~~~~G~~~~~~~~~~~~~~~iTvFSa~~Y~~~~~N~~a~l~i~~~~-~~~~~~~~~~~ 299 (305)
T cd07416 243 AQDAGYRMYRKSQTTGFPSLITIFSAPNYLDVYNNKAAVLKYENNV-MNIRQFNCSPH 299 (305)
T ss_pred ccccceEEecCCCcCCCCcEEEEeCCccccCCCCceEEEEEEcCCc-ceEEEecCCCC
Confidence 999999998886 9999999999999999999999999985 67888876553
No 13
>smart00156 PP2Ac Protein phosphatase 2A homologues, catalytic domain. Large family of serine/threonine phosphatases, that includes PP1, PP2A and PP2B (calcineurin) family members.
Probab=100.00 E-value=1.1e-65 Score=542.21 Aligned_cols=269 Identities=48% Similarity=0.880 Sum_probs=254.9
Q ss_pred cCHHHHHHHHHHHHHHHhcCCceEeecCCeEEEecCCCCHHHHHHHHHHhCCCCCCCCcceeeEEEeccccCCCCChHHH
Q 003577 479 LDSYEVGELCYAAEQIFMQEPTVLQLRAPVKVFGDLHGQFGDLMRLFDEYGFPSTAGDITYIDYLFLGDYVDRGQHSLET 558 (810)
Q Consensus 479 ~~~~~i~~l~~~~~~~~~~e~~~l~~~~pi~vvGDiHG~~~~L~~~l~~~~~~~~~~~~~~~~~vfLGDyVDRG~~s~ev 558 (810)
++++++.+||++|+++|++||++++++.|++||||||||+.+|.++|+..+.++.. +|||||||||||++|+||
T Consensus 1 ~~~~~i~~l~~~~~~il~~e~~~~~i~~~i~vvGDiHG~~~~l~~ll~~~~~~~~~------~~vfLGD~VDrG~~s~e~ 74 (271)
T smart00156 1 LYAEEILELLREVKEIFRQEPNLVEVSAPVTVCGDIHGQFDDLLRLFDLNGPPPDT------NYVFLGDYVDRGPFSIEV 74 (271)
T ss_pred CCHHHHHHHHHHHHHHHHhCCCeEEeCCCEEEEEeCcCCHHHHHHHHHHcCCCCCc------eEEEeCCccCCCCChHHH
Confidence 35789999999999999999999999999999999999999999999999987665 899999999999999999
Q ss_pred HHHHHHHhhcCCCcEEEecCCccccchhhccCChHHHHHhhCCCCccccccccccccccCceeEEEcCcEEEecCCcCCc
Q 003577 559 ITLLLALKIEYPENVHLIRGNHEAADINALFGFRLECIERMGENDGIWAWTRFNQLFNCLPLAALIEKKIICMHGGIGRS 638 (810)
Q Consensus 559 l~ll~~lk~~~p~~v~llrGNHE~~~~~~~~gf~~e~~~~~~~~~~~~~~~~~~~~f~~lPla~~i~~~il~vHgGi~~~ 638 (810)
+.+|++||+.+|.++++||||||.+.++..|||..|+..+|+ ..+|+.+.++|++||+++++++++|||||||+|.
T Consensus 75 l~~l~~lk~~~p~~v~llrGNHE~~~~~~~~gf~~e~~~~~~----~~l~~~~~~~f~~LPl~aii~~~~~~vHgGi~~~ 150 (271)
T smart00156 75 ILLLFALKILYPNRVVLLRGNHESRSMNEIYGFYDECKRKYG----EEIYEKFQEAFSWLPLAALIDNKILCMHGGLSPD 150 (271)
T ss_pred HHHHHHHHhcCCCCEEEEeccccHHHHHHhccchhhhhhhcC----HHHHHHHHHHHhhChhheEEcCeEEEEecCCCCc
Confidence 999999999999999999999999999999999999999985 4699999999999999999999999999999999
Q ss_pred ccchhhhhcccCCcccCCCchhhhhhccCCCCCCCCCCCCCcCCCCCceeeeCHHHHHHHHHhcCCcEEEEeccccccce
Q 003577 639 IHSVEQIEKLERPITMDAGSIILMDLLWSDPTENDSIEGLRPNARGPGLVTFGPDRVSDFCKRNKLQLIIRAHECVMDGF 718 (810)
Q Consensus 639 ~~~~~~i~~~~rp~~~~~~~~~~~dllWsdP~~~~~~~~~~~~~rg~~~~~fg~~~~~~fl~~~~l~~iiR~H~~~~~G~ 718 (810)
+.++++|+.++||.+.+... +++|+|||||.. ...+|.+|+||.| +.||++++++||++||+++||||||++++||
T Consensus 151 ~~~l~~i~~i~r~~~~~~~~-~~~dllWsDP~~--~~~~~~~~~Rg~g-~~fg~~~~~~Fl~~n~l~~iiR~He~~~~G~ 226 (271)
T smart00156 151 LTTLDDIRKLKRPQEPPDEG-LLIDLLWSDPDQ--PVDGFQPSIRGAS-YYFGPDAVDEFLKKNNLKLIIRAHQVVDDGY 226 (271)
T ss_pred cCCHHHHhcccCCCCCCchh-hhhheeecCCCc--ccCCCccCCCCCc-cccCHHHHHHHHHHCCCeEEEecCcccCCcE
Confidence 99999999999998876654 899999999974 3578999999999 6899999999999999999999999999999
Q ss_pred EEecCCeEEEEEccCCCCCCCCCeEEEEEEcCcceEEEEEecC
Q 003577 719 ERFAQGQLITLFSATNYCGTANNAGAILVVGRGLVVVPKLIHP 761 (810)
Q Consensus 719 ~~~~~~~~itvfSa~~y~~~~~n~ga~l~~~~~~~~~~~~~~~ 761 (810)
+++++++|||||||||||+..+|+||+|.+++++++.++.+.|
T Consensus 227 ~~~~~~~~~TvfSa~~y~~~~~n~~a~~~i~~~~~~~~~~~~~ 269 (271)
T smart00156 227 EFFHDRKLVTIFSAPNYCGRFGNKAAVLKVDKDLKLSFEQFKP 269 (271)
T ss_pred EEecCCcEEEEECCcccccCCCceEEEEEECCCCcEEEEEecC
Confidence 9999999999999999999999999999999999999988865
No 14
>cd07418 MPP_PP7 PP7, metallophosphatase domain. PP7 is a plant phosphoprotein phosphatase that is highly expressed in a subset of stomata and thought to play an important role in sensory signaling. PP7 acts as a positive regulator of signaling downstream of cryptochrome blue light photoreceptors. PP7 also controls amplification of phytochrome signaling, and interacts with nucleotidediphosphate kinase 2 (NDPK2), a positive regulator of phytochrome signalling. In addition, PP7 interacts with heat shock transcription factor HSF and up-regulates protective heat shock proteins. PP7 may also play a role in salicylic acid-dependent defense signaling. The PPP (phosphoprotein phosphatase) family, to which PP7 belongs, is one of two known protein phosphatase families specific for serine and threonine. The PPP family also includes: PP2A, PP2B (calcineurin), PP4, PP5, PP6, Bsu1, RdgC, PrpE, PrpA/PrpB, and ApA4 hydrolase. The PPP catalytic domain is defined by three conserved motifs (-GDXHG-,
Probab=100.00 E-value=1.7e-63 Score=537.62 Aligned_cols=298 Identities=34% Similarity=0.588 Sum_probs=257.3
Q ss_pred hhHHHHHHHHHhCCCCCCCCCCcccccCHHHHHHHHHHHHHHHhcCCceEeec----CCeEEEecCCCCHHHHHHHHHHh
Q 003577 453 QGLHKKIISTLLRPRNWKAPANRRFFLDSYEVGELCYAAEQIFMQEPTVLQLR----APVKVFGDLHGQFGDLMRLFDEY 528 (810)
Q Consensus 453 ~~~~~~~i~~l~~~~~~~~~~~~~~~~~~~~i~~l~~~~~~~~~~e~~~l~~~----~pi~vvGDiHG~~~~L~~~l~~~ 528 (810)
.+..+.||..+.....--++.+....|+.++|.+||++|+++|++||+++++. +|++||||||||+.+|+++|+..
T Consensus 9 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~L~~~a~~il~~ep~ll~i~~~~~~~i~VvGDIHG~~~dL~~ll~~~ 88 (377)
T cd07418 9 NEWVHELMSVFEWSSRNLPPSELPSVLPVNVFDSLVLTAHKILHREPNCVRIDVEDVCEVVVVGDVHGQLHDVLFLLEDA 88 (377)
T ss_pred HHHHHHHHHHHHhcccccCchhhccCCCHHHHHHHHHHHHHHHHhCCCeEEecCCCCCCEEEEEecCCCHHHHHHHHHHh
Confidence 35567888887654322233444456899999999999999999999999998 89999999999999999999999
Q ss_pred CCCCCCCCcceeeEEEeccccCCCCChHHHHHHHHHHhhcCCCcEEEecCCccccchhhccCChHHHHHhhCCCCccccc
Q 003577 529 GFPSTAGDITYIDYLFLGDYVDRGQHSLETITLLLALKIEYPENVHLIRGNHEAADINALFGFRLECIERMGENDGIWAW 608 (810)
Q Consensus 529 ~~~~~~~~~~~~~~vfLGDyVDRG~~s~evl~ll~~lk~~~p~~v~llrGNHE~~~~~~~~gf~~e~~~~~~~~~~~~~~ 608 (810)
|+++.+. +|||||||||||++|+|||.+|++||+.+|++|++||||||.+.++..|||..|+..+|+.. +..+|
T Consensus 89 g~~~~~~-----~ylFLGDyVDRGp~SlEvl~lL~~lki~~p~~v~lLRGNHE~~~i~~~~Gf~~E~~~~y~~~-~~~l~ 162 (377)
T cd07418 89 GFPDQNR-----FYVFNGDYVDRGAWGLETFLLLLSWKVLLPDRVYLLRGNHESKFCTSMYGFEQEVLTKYGDK-GKHVY 162 (377)
T ss_pred CCCCCCc-----eEEEeccccCCCCChHHHHHHHHHHhhccCCeEEEEeeecccccchhhcccchhhhhhcCch-HHHHH
Confidence 9886542 69999999999999999999999999999999999999999999999999999999999753 45799
Q ss_pred cccccccccCceeEEEcCcEEEecCCc---------------------------CCcccchhhhhcccCCc-ccCCCc--
Q 003577 609 TRFNQLFNCLPLAALIEKKIICMHGGI---------------------------GRSIHSVEQIEKLERPI-TMDAGS-- 658 (810)
Q Consensus 609 ~~~~~~f~~lPla~~i~~~il~vHgGi---------------------------~~~~~~~~~i~~~~rp~-~~~~~~-- 658 (810)
++++++|++||+++++++++||||||| +|.+.++++|+.++||. +.+..+
T Consensus 163 ~~~~~~f~~LPlaavI~~~i~cvHGGI~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~sl~~i~~i~r~~~~~~~~~~~ 242 (377)
T cd07418 163 RKCLGCFEGLPLASIIAGRVYTAHGGLFRSPSLPKRKKQKGKNRRVLLLEPESESLKLGTLDDLMKARRSVLDPPGEGSN 242 (377)
T ss_pred HHHHHHHHhCCcEEEECCCEEEECCCcCCcccccccccccccccccccccccccCCCCCCHHHHhhCCCCCCCCCCCCcc
Confidence 999999999999999999999999999 44567999999999985 444332
Q ss_pred hhhhhhccCCCCCCCCCCCCCcC-CCCCceeeeCHHHHHHHHHhcCCcEEEEeccc------------cccceEEecC--
Q 003577 659 IILMDLLWSDPTENDSIEGLRPN-ARGPGLVTFGPDRVSDFCKRNKLQLIIRAHEC------------VMDGFERFAQ-- 723 (810)
Q Consensus 659 ~~~~dllWsdP~~~~~~~~~~~~-~rg~~~~~fg~~~~~~fl~~~~l~~iiR~H~~------------~~~G~~~~~~-- 723 (810)
.+++|||||||.. ..+|.+| .||.| +.||++++++||++|++++||||||| |++||+++++
T Consensus 243 ~i~~dlLWSDP~~---~~g~~~~~~RG~g-~~FG~~~~~~FL~~n~l~~IIRsHe~~~~~~~~~~~~~v~~Gy~~~~~~~ 318 (377)
T cd07418 243 LIPGDVLWSDPSL---TPGLSPNKQRGIG-LLWGPDCTEEFLEKNNLKLIIRSHEGPDAREKRPGLAGMNKGYTVDHDVE 318 (377)
T ss_pred ccceeeEeeCCcc---CCCCCccCCCCCc-cccCHHHHHHHHHHcCCcEEEECCCCcccccccccchhhhCceEEeccCC
Confidence 2578999999985 3577777 79999 78999999999999999999999996 6899999887
Q ss_pred -CeEEEEEccCCCC------CCCCCeEEEEEEcCcc--eEEEEEec
Q 003577 724 -GQLITLFSATNYC------GTANNAGAILVVGRGL--VVVPKLIH 760 (810)
Q Consensus 724 -~~~itvfSa~~y~------~~~~n~ga~l~~~~~~--~~~~~~~~ 760 (810)
++||||||||||| +.++|+||+++++.+- ...++.+.
T Consensus 319 ~~~liTvFSa~nY~~~~~~~~~~~N~ga~~~~~~~~~~~~~~~~~~ 364 (377)
T cd07418 319 SGKLITLFSAPDYPQFQATEERYNNKGAYIILQPPDFSDPQFHTFE 364 (377)
T ss_pred CCcEEEEecCCccccccccccccCcceEEEEEecCCCCCccceEee
Confidence 9999999999999 5789999999997643 34444443
No 15
>KOG0371 consensus Serine/threonine protein phosphatase 2A, catalytic subunit [Signal transduction mechanisms]
Probab=100.00 E-value=3e-63 Score=487.10 Aligned_cols=286 Identities=41% Similarity=0.722 Sum_probs=269.0
Q ss_pred HHHHHHHHhCCCCCCCCCCcccccCHHHHHHHHHHHHHHHhcCCceEeecCCeEEEecCCCCHHHHHHHHHHhCCCCCCC
Q 003577 456 HKKIISTLLRPRNWKAPANRRFFLDSYEVGELCYAAEQIFMQEPTVLQLRAPVKVFGDLHGQFGDLMRLFDEYGFPSTAG 535 (810)
Q Consensus 456 ~~~~i~~l~~~~~~~~~~~~~~~~~~~~i~~l~~~~~~~~~~e~~~l~~~~pi~vvGDiHG~~~~L~~~l~~~~~~~~~~ 535 (810)
.+..|..|...+ .+++.++..||+.|+++|.+|.++..+..|++||||+||||+||+++|+..|..++.
T Consensus 20 vd~~ie~L~~ck----------~lse~~v~~lc~~a~~~L~~e~nV~~v~~pvtvcGDvHGqf~dl~ELfkiGG~~pdt- 88 (319)
T KOG0371|consen 20 VDPWIEQLYKCK----------PLSEVDVSSLCLLAKEILDKEENVQPVNCPVTVCGDVHGQFHDLIELFKIGGLAPDT- 88 (319)
T ss_pred cccchHHHHhcC----------CCccccchhHHHHHHHHHhccccccccccceEEecCcchhHHHHHHHHHccCCCCCc-
Confidence 456677777653 478889999999999999999999999999999999999999999999988887765
Q ss_pred CcceeeEEEeccccCCCCChHHHHHHHHHHhhcCCCcEEEecCCccccchhhccCChHHHHHhhCCCCcccccccccccc
Q 003577 536 DITYIDYLFLGDYVDRGQHSLETITLLLALKIEYPENVHLIRGNHEAADINALFGFRLECIERMGENDGIWAWTRFNQLF 615 (810)
Q Consensus 536 ~~~~~~~vfLGDyVDRG~~s~evl~ll~~lk~~~p~~v~llrGNHE~~~~~~~~gf~~e~~~~~~~~~~~~~~~~~~~~f 615 (810)
+|+|+|||||||++|.|++.+|.++|++||++|.+||||||.+.+..+|||++||.+|||.. .+|+.|.+.|
T Consensus 89 -----nylfmGDyvdrGy~SvetVS~lva~Kvry~~rvtilrGNHEsrqitqvygfydeclRkyg~a---nvw~~Ftdlf 160 (319)
T KOG0371|consen 89 -----NYLFMGDYVDRGYYSVETVSLLVALKVRYPDRVTILRGNHESRQITQVYGFYDECLRKYGNA---NVWKYFTDLF 160 (319)
T ss_pred -----ceeeeeeecccccchHHHHHHHHHhhccccceeEEecCchHHHHHHHHHhhHHHHHhhcccc---cchHHhhhhh
Confidence 89999999999999999999999999999999999999999999999999999999999864 6999999999
Q ss_pred ccCceeEEEcCcEEEecCCcCCcccchhhhhcccCCcccCCCchhhhhhccCCCCCCCCCCCCCcCCCCCceeeeCHHHH
Q 003577 616 NCLPLAALIEKKIICMHGGIGRSIHSVEQIEKLERPITMDAGSIILMDLLWSDPTENDSIEGLRPNARGPGLVTFGPDRV 695 (810)
Q Consensus 616 ~~lPla~~i~~~il~vHgGi~~~~~~~~~i~~~~rp~~~~~~~~~~~dllWsdP~~~~~~~~~~~~~rg~~~~~fg~~~~ 695 (810)
+++|+.|+|+++|||.|||++|++.+++.++.+.|-.+++.++ .+||||||||+. ..||..++||.| +.||.+..
T Consensus 161 dy~P~tali~~~ifc~HGgLspsi~tld~~r~~dr~~evpheg-pmcDlLwsdpdd---r~gwg~sprgag-~tfg~di~ 235 (319)
T KOG0371|consen 161 DYLPLTALIESKIFCLHGGLSPSIDTLDLIRLLDRIQEVPHEG-PMCDLLWSDPDD---RCGWGISPRGAG-YTFGQDIS 235 (319)
T ss_pred hccchHhhhccceeeccCCcCcccchHHHHHHHHHhhcccCCC-ChhheeccCccc---CCCCCCCCCCCC-cccchhhH
Confidence 9999999999999999999999999999999999988888877 678999999985 689999999999 79999999
Q ss_pred HHHHHhcCCcEEEEeccccccceEEecCCeEEEEEccCCCCCCCCCeEEEEEEcCcceEEEEEecCCCCC
Q 003577 696 SDFCKRNKLQLIIRAHECVMDGFERFAQGQLITLFSATNYCGTANNAGAILVVGRGLVVVPKLIHPLPPP 765 (810)
Q Consensus 696 ~~fl~~~~l~~iiR~H~~~~~G~~~~~~~~~itvfSa~~y~~~~~n~ga~l~~~~~~~~~~~~~~~~~~~ 765 (810)
++|-.+||+++|-|+||.+++||.+++...++|||||||||+.++|.+|+|.+++.....+..|.|.|..
T Consensus 236 ~~fn~~n~lslisRahqlvm~g~nW~~~~~~vtiFSapnycYrcgn~a~i~e~d~~~~~~f~q~~psp~k 305 (319)
T KOG0371|consen 236 EQFNHKNGLSLISRAHQLVMEGYNWYHLWNVVTIFSAPNYCYRCGNQAAIMERDDTKNYDFLQFDPSPRK 305 (319)
T ss_pred HHhhccCCchHhHHHHHHHhcccceeeecceeEEccCCchhhccccHHHHhhhhhccCcceEEecCCccc
Confidence 9999999999999999999999999999999999999999999999999999999999999999986543
No 16
>KOG0375 consensus Serine-threonine phosphatase 2B, catalytic subunit [General function prediction only]
Probab=100.00 E-value=4.3e-63 Score=504.24 Aligned_cols=263 Identities=39% Similarity=0.679 Sum_probs=245.6
Q ss_pred ccCHHHHHHHHHHHHHHHhcCCceEeecCCeEEEecCCCCHHHHHHHHHHhCCCCCCCCcceeeEEEeccccCCCCChHH
Q 003577 478 FLDSYEVGELCYAAEQIFMQEPTVLQLRAPVKVFGDLHGQFGDLMRLFDEYGFPSTAGDITYIDYLFLGDYVDRGQHSLE 557 (810)
Q Consensus 478 ~~~~~~i~~l~~~~~~~~~~e~~~l~~~~pi~vvGDiHG~~~~L~~~l~~~~~~~~~~~~~~~~~vfLGDyVDRG~~s~e 557 (810)
.|+++..+.|+.++..+|++|++++++++||.|||||||||.||+++|+..|.|... +|+|||||||||..|+|
T Consensus 60 rl~ee~alrIi~~~a~llr~Eknmi~v~APiTVCGDIHGQf~DLmKLFEVGG~PA~t------~YLFLGDYVDRGyFSiE 133 (517)
T KOG0375|consen 60 RLEEEQALRIINEGAALLRQEKNMIEVEAPITVCGDIHGQFFDLMKLFEVGGSPANT------RYLFLGDYVDRGYFSIE 133 (517)
T ss_pred chhHHHHHHHHHHHHHHHhcCCceEeccCCeeEecccchHHHHHHHHHHccCCcccc------eeEeeccccccceeeee
Confidence 378999999999999999999999999999999999999999999999999888665 89999999999999999
Q ss_pred HHHHHHHHhhcCCCcEEEecCCccccchhhccCChHHHHHhhCCCCccccccccccccccCceeEEEcCcEEEecCCcCC
Q 003577 558 TITLLLALKIEYPENVHLIRGNHEAADINALFGFRLECIERMGENDGIWAWTRFNQLFNCLPLAALIEKKIICMHGGIGR 637 (810)
Q Consensus 558 vl~ll~~lk~~~p~~v~llrGNHE~~~~~~~~gf~~e~~~~~~~~~~~~~~~~~~~~f~~lPla~~i~~~il~vHgGi~~ 637 (810)
|+.+|.+||+.||+.+++||||||++.+..+|.|..||..||. .++|+.+.+.|++|||||+.++++||||||++|
T Consensus 134 CvlYLwsLKi~yp~tl~lLRGNHECrHLT~YFTFKqEc~iKYs----e~vYdaCmesFd~LPLAAlmNqQflCVHGGlSP 209 (517)
T KOG0375|consen 134 CVLYLWSLKINYPKTLFLLRGNHECRHLTEYFTFKQECKIKYS----ERVYDACMESFDCLPLAALMNQQFLCVHGGLSP 209 (517)
T ss_pred hHHHHHHHhcCCCCeEEEecCCcchhhhHhHhhHHHHHhHhcc----HHHHHHHHHHhccchHHHHhcCceEEecCCCCc
Confidence 9999999999999999999999999999999999999999994 479999999999999999999999999999999
Q ss_pred cccchhhhhcccCCcccCCCchhhhhhccCCCCCCCC----CCCCCcC-CCCCceeeeCHHHHHHHHHhcCCcEEEEecc
Q 003577 638 SIHSVEQIEKLERPITMDAGSIILMDLLWSDPTENDS----IEGLRPN-ARGPGLVTFGPDRVSDFCKRNKLQLIIRAHE 712 (810)
Q Consensus 638 ~~~~~~~i~~~~rp~~~~~~~~~~~dllWsdP~~~~~----~~~~~~~-~rg~~~~~fg~~~~~~fl~~~~l~~iiR~H~ 712 (810)
.+.+++||+++.|..++|..+ .+||||||||.++.+ .+-|.+| .||++ |.|.-.++.+||++|||--|||+||
T Consensus 210 Ei~tl~DIr~l~RF~EpPa~G-pmCDLLWsDPlEdfgnek~~e~f~hNsvRGCS-yfysy~A~C~FLq~nnLLSIiRAHE 287 (517)
T KOG0375|consen 210 EIHTLDDIRKLDRFKEPPAFG-PMCDLLWSDPLEDFGNEKTSEHFTHNSVRGCS-YFYSYPAVCEFLQNNNLLSIIRAHE 287 (517)
T ss_pred ccccHHHHHhhhhccCCCccC-cchhhhccChhhhccccccccccccCcccccc-ceechHHHHHHHHhCCchhhhhhhh
Confidence 999999999999999999877 899999999986422 2456666 79998 7899999999999999999999999
Q ss_pred ccccceEEecCC------eEEEEEccCCCCCCCCCeEEEEEEcCcc
Q 003577 713 CVMDGFERFAQG------QLITLFSATNYCGTANNAGAILVVGRGL 752 (810)
Q Consensus 713 ~~~~G~~~~~~~------~~itvfSa~~y~~~~~n~ga~l~~~~~~ 752 (810)
.+..||..+... .||||||||||-+.++|++|||..+++.
T Consensus 288 AQDaGYRMYrksqttGFPSLiTiFSAPNYLDvYnNKAAvLKYEnNV 333 (517)
T KOG0375|consen 288 AQDAGYRMYRKSQTTGFPSLITIFSAPNYLDVYNNKAAVLKYENNV 333 (517)
T ss_pred hhhhhhhhhhcccccCCchheeeecCCchhhhhccHHHHhhhhccc
Confidence 999999987665 5899999999999999999999987764
No 17
>KOG0377 consensus Protein serine/threonine phosphatase RDGC/PPEF, contains STphosphatase and EF-hand domains [Signal transduction mechanisms]
Probab=100.00 E-value=2.7e-53 Score=442.26 Aligned_cols=280 Identities=33% Similarity=0.623 Sum_probs=246.6
Q ss_pred HHHHHHHHhCCCCCCCCCCcccccCHHHHHHHHHHHHHHHhcCCceEeec----CCeEEEecCCCCHHHHHHHHHHhCCC
Q 003577 456 HKKIISTLLRPRNWKAPANRRFFLDSYEVGELCYAAEQIFMQEPTVLQLR----APVKVFGDLHGQFGDLMRLFDEYGFP 531 (810)
Q Consensus 456 ~~~~i~~l~~~~~~~~~~~~~~~~~~~~i~~l~~~~~~~~~~e~~~l~~~----~pi~vvGDiHG~~~~L~~~l~~~~~~ 531 (810)
++.+|+.+-.. ..|....+..|+.+|+++|++-|++-+++ ..|.||||+||.++||+-+|.+.|+|
T Consensus 121 i~~lieaFk~k----------q~LH~kYVl~iL~EakK~lkqmPnis~isTs~S~qVTiCGDLHGklDDL~~I~yKNGlP 190 (631)
T KOG0377|consen 121 IDLLIEAFKKK----------QRLHPKYVLLILREAKKSLKQMPNISRISTSVSQQVTICGDLHGKLDDLLVILYKNGLP 190 (631)
T ss_pred HHHHHHHHHHh----------hhccHHHHHHHHHHHHHHHHhCCCCCccccccccceEEeccccccccceEEEEecCCCC
Confidence 45666655433 25788899999999999999999999976 46999999999999999999999999
Q ss_pred CCCCCcceeeEEEeccccCCCCChHHHHHHHHHHhhcCCCcEEEecCCccccchhhccCChHHHHHhhCCCCcccccccc
Q 003577 532 STAGDITYIDYLFLGDYVDRGQHSLETITLLLALKIEYPENVHLIRGNHEAADINALFGFRLECIERMGENDGIWAWTRF 611 (810)
Q Consensus 532 ~~~~~~~~~~~vfLGDyVDRG~~s~evl~ll~~lk~~~p~~v~llrGNHE~~~~~~~~gf~~e~~~~~~~~~~~~~~~~~ 611 (810)
+..+ .|||.||+||||.+|+|||++|+++-+.||..+||-|||||+..+|..|||..|...||..+ +..+..-+
T Consensus 191 S~~n-----pYvFNGDFVDRGk~siEvLmiL~a~~lv~P~~~~LNRGNHED~mmNlRYGF~kEv~~KYk~~-~k~Ilr~l 264 (631)
T KOG0377|consen 191 SSSN-----PYVFNGDFVDRGKRSIEVLMILFALYLVYPNAVHLNRGNHEDHMMNLRYGFIKEVESKYKRH-GKRILRFL 264 (631)
T ss_pred CCCC-----CeeecCchhhccccchhhHHHHHHHHhcCchhhhccCCchHHHHHHHHHhHHHHHHHHhhhc-ccHHHHHH
Confidence 8774 79999999999999999999999999999999999999999999999999999999999765 66777888
Q ss_pred ccccccCceeEEEcCcEEEecCCcCCcccchhhhhcccCC---------ccc--C----------CCchhhhhhccCCCC
Q 003577 612 NQLFNCLPLAALIEKKIICMHGGIGRSIHSVEQIEKLERP---------ITM--D----------AGSIILMDLLWSDPT 670 (810)
Q Consensus 612 ~~~f~~lPla~~i~~~il~vHgGi~~~~~~~~~i~~~~rp---------~~~--~----------~~~~~~~dllWsdP~ 670 (810)
.++|.+||++.+|+.+||+|||||+.. +.++-|.+|.|- ++. + ++.+.+.|||||||.
T Consensus 265 eevy~WLPi~tiid~~ilvvHGGiSd~-Tdl~ll~kIeR~k~~Svlrpp~ek~~d~e~~s~~vg~dEW~Qi~DImWSDP~ 343 (631)
T KOG0377|consen 265 EEVYRWLPIGTIIDSRILVVHGGISDS-TDLDLLDKIERGKYVSVLRPPTEKGRDGEKLSKAVGVDEWQQIFDIMWSDPQ 343 (631)
T ss_pred HHHHHhcchhhhcccceEEEecCcccc-hhHHHHhhhhccceeEEecCCcccCccCCchhhhcChHHHHHHHHHHhcCcc
Confidence 999999999999999999999999987 667766666552 211 0 023467899999998
Q ss_pred CCCCCCCCCcC-CCCCceeeeCHHHHHHHHHhcCCcEEEEeccccccceEEecCCeEEEEEccCCCCCCCCCeEEEEEEc
Q 003577 671 ENDSIEGLRPN-ARGPGLVTFGPDRVSDFCKRNKLQLIIRAHECVMDGFERFAQGQLITLFSATNYCGTANNAGAILVVG 749 (810)
Q Consensus 671 ~~~~~~~~~~~-~rg~~~~~fg~~~~~~fl~~~~l~~iiR~H~~~~~G~~~~~~~~~itvfSa~~y~~~~~n~ga~l~~~ 749 (810)
. ..|..|| -||.| ++||+|++.+||++++++++||+|||.++|||+.++++|+|||||+||.....|.||++.+.
T Consensus 344 ~---~~GC~pNt~RGgG-~yFGpDvT~~~Lqk~~l~~liRSHECKpeGyEf~Hd~kvlTiFSASNYYe~GSNrGAYikl~ 419 (631)
T KOG0377|consen 344 A---TMGCVPNTLRGGG-CYFGPDVTDNFLQKHRLSYLIRSHECKPEGYEFCHDNKVLTIFSASNYYEIGSNRGAYIKLG 419 (631)
T ss_pred c---ccCCCcccccCCc-ceeCchHHHHHHHHhCceeeeeecccCCCcceeeeCCeEEEEEeccchheecCCCceEEEeC
Confidence 6 3677788 69999 68999999999999999999999999999999999999999999999999999999999999
Q ss_pred CcceEEE
Q 003577 750 RGLVVVP 756 (810)
Q Consensus 750 ~~~~~~~ 756 (810)
+.++.-+
T Consensus 420 ~~~~Phf 426 (631)
T KOG0377|consen 420 NQLTPHF 426 (631)
T ss_pred CCCCchH
Confidence 8775443
No 18
>KOG0376 consensus Serine-threonine phosphatase 2A, catalytic subunit [General function prediction only]
Probab=100.00 E-value=2.6e-46 Score=402.29 Aligned_cols=273 Identities=38% Similarity=0.671 Sum_probs=248.8
Q ss_pred cCHHHHHHHHHHHHHHHhcCCceEeecCC----eEEEecCCCCHHHHHHHHHHhCCCCCCCCcceeeEEEeccccCCCCC
Q 003577 479 LDSYEVGELCYAAEQIFMQEPTVLQLRAP----VKVFGDLHGQFGDLMRLFDEYGFPSTAGDITYIDYLFLGDYVDRGQH 554 (810)
Q Consensus 479 ~~~~~i~~l~~~~~~~~~~e~~~l~~~~p----i~vvGDiHG~~~~L~~~l~~~~~~~~~~~~~~~~~vfLGDyVDRG~~ 554 (810)
+...-...|+..+.++++++|+++++..| +.|+||+||||.|++++|+..|.|+... .|+|-||+||||..
T Consensus 183 L~~k~a~~i~~~~~~~~~~l~~~ve~~~~~d~~~sv~gd~hGqfydl~nif~l~g~Ps~t~-----~ylfngdfv~rgs~ 257 (476)
T KOG0376|consen 183 LPKKYAYSILDLAKTILRKLPSLVEISVPGDVKISVCGDTHGQFYDLLNIFELNGLPSETN-----PYLFNGDFVDRGSW 257 (476)
T ss_pred cccccceeeHHHHhhHHhcCCcceEeecCCCceEEecCCccccccchhhhHhhcCCCCCcc-----cccccCceeeeccc
Confidence 45556778999999999999999998754 8999999999999999999999998764 89999999999999
Q ss_pred hHHHHHHHHHHhhcCCCcEEEecCCccccchhhccCChHHHHHhhCCCCccccccccccccccCceeEEEcCcEEEecCC
Q 003577 555 SLETITLLLALKIEYPENVHLIRGNHEAADINALFGFRLECIERMGENDGIWAWTRFNQLFNCLPLAALIEKKIICMHGG 634 (810)
Q Consensus 555 s~evl~ll~~lk~~~p~~v~llrGNHE~~~~~~~~gf~~e~~~~~~~~~~~~~~~~~~~~f~~lPla~~i~~~il~vHgG 634 (810)
|.|++..+++.|+.+|+++|++|||||...++..|||..|+..+|.+ ..+..+.++|..||++.+|+++++.+|||
T Consensus 258 s~e~~~~~~~~kl~~pn~~fl~rgn~Es~~m~~iy~f~~e~~~kyte----~~~~~f~~~f~~LPl~~~i~~~~~~~hgg 333 (476)
T KOG0376|consen 258 SVEVILTLFAFKLLYPNNFFLLRGNHESDNMNKIYGFEGEVKAKYTE----EMFNLFSEVFIWLPLAHLINNKVLVMHGG 333 (476)
T ss_pred ceeeeeeehhhcccCCcceeeccCCccchHHHHHhCCCcchhhhhHH----HHHHhhhhhhccccchhhhcCceEEEecC
Confidence 99999999999999999999999999999999999999999999954 56667779999999999999999999999
Q ss_pred cCC-cccchhhhhcccCCcccCCCchhhhhhccCCCCCCCCCCCCCcCCCCCceeeeCHHHHHHHHHhcCCcEEEEeccc
Q 003577 635 IGR-SIHSVEQIEKLERPITMDAGSIILMDLLWSDPTENDSIEGLRPNARGPGLVTFGPDRVSDFCKRNKLQLIIRAHEC 713 (810)
Q Consensus 635 i~~-~~~~~~~i~~~~rp~~~~~~~~~~~dllWsdP~~~~~~~~~~~~~rg~~~~~fg~~~~~~fl~~~~l~~iiR~H~~ 713 (810)
+.. .-.++++|++|.|+...+..+ .++++|||||.. ..|..++.||.| ..||+|+.++||+.|++++|||+||+
T Consensus 334 lf~~~~v~l~d~r~i~r~~~~~~~~-~~~~~lws~pq~---~~g~s~S~r~~g-~~fG~d~t~~f~~~n~l~~i~rshe~ 408 (476)
T KOG0376|consen 334 LFSPDGVTLEDFRNIDRFEQPPEEG-LMCELLWSDPQP---ANGRSPSKRGVG-LQFGPDVTERFLQDNNLDKIIRSHEV 408 (476)
T ss_pred cCCCCCccHHHHHhhhhccCCcccc-cccccccCCCcc---ccCCCccccCce-eeeCCCchhhHHhhcchHHHhhcccc
Confidence 964 446899999999995555444 899999999986 478999999999 68999999999999999999999999
Q ss_pred cccceEEecCCeEEEEEccCCCCCCCCCeEEEEEEc-CcceEEEEEecCCCCC
Q 003577 714 VMDGFERFAQGQLITLFSATNYCGTANNAGAILVVG-RGLVVVPKLIHPLPPP 765 (810)
Q Consensus 714 ~~~G~~~~~~~~~itvfSa~~y~~~~~n~ga~l~~~-~~~~~~~~~~~~~~~~ 765 (810)
.+.||++-++|+|+|||||||||...+|.||++.++ ++++..+.-|.++|-.
T Consensus 409 ~d~gy~~eh~g~l~tvfsapnycd~~~n~ga~i~~~~~~~~p~~~~~e~vp~~ 461 (476)
T KOG0376|consen 409 KDEGYEVEHSGKLITVFSAPNYCDQMGNKGAFIHLEPDDLTPNFYTFEAVPHP 461 (476)
T ss_pred CCCceeeecCCcEEEEecCcchhhhcCCcceEEEecCCCCccceeecccCCCC
Confidence 999999999999999999999999999999999998 6788888888776643
No 19
>PLN02193 nitrile-specifier protein
Probab=100.00 E-value=7.5e-34 Score=325.43 Aligned_cols=260 Identities=23% Similarity=0.324 Sum_probs=219.2
Q ss_pred CcEEEecCCCCCCccccccEEEEECCEEEEECccCCC-CCccCcEEEEEccCCceEEEEEeecCCCCCc-ccccEEEEEC
Q 003577 10 AGVCRIRPAGEPPSPRAAHAAAAVGTMVVFQGGIGPA-GHSTDDLYVLDLTNDKFKWHRVVVQGQGPGP-RYGHVMDLVS 87 (810)
Q Consensus 10 ~~W~~l~~~g~~P~~R~~haa~~~~~~lyv~GG~~~~-~~~~~dl~~lDl~t~~~~W~~v~~~g~~P~~-R~~Hs~~~v~ 87 (810)
.+|.++.+.++.|.||.+|+++.+++.||++||.... ....+++|+||+.++ +|..+++.++.|.+ |.+|++++++
T Consensus 151 ~~W~~~~~~~~~P~pR~~h~~~~~~~~iyv~GG~~~~~~~~~~~v~~yD~~~~--~W~~~~~~g~~P~~~~~~~~~v~~~ 228 (470)
T PLN02193 151 GKWIKVEQKGEGPGLRCSHGIAQVGNKIYSFGGEFTPNQPIDKHLYVFDLETR--TWSISPATGDVPHLSCLGVRMVSIG 228 (470)
T ss_pred ceEEEcccCCCCCCCccccEEEEECCEEEEECCcCCCCCCeeCcEEEEECCCC--EEEeCCCCCCCCCCcccceEEEEEC
Confidence 7999999888889999999999999999999998533 334578999999984 59988877767764 6799998888
Q ss_pred CcEEEEEccCCCCCCCCcEEEEecCCCCcEEEEecCCCCCCCcccceEEEEeCCcEEEEEcccCCCCCccccEEEEEeCC
Q 003577 88 QRYLVSVSGNDGKRVLSDAWALDTAQKPYVWQRLNPEGDRPSARMYATASARSDGMFLLCGGRDASGAPLADAYGLLMHR 167 (810)
Q Consensus 88 ~~~l~VfGG~~g~~~~ndv~~yd~~~~~~~W~~i~~~g~~P~~R~~hsa~~~~~~~l~v~GG~~~~g~~l~d~~~l~~~~ 167 (810)
+. ||||||.++...++++|+||+.++ +|+++.+.+..|.+|.+|++++.. ++|||+||.+.. ..+++++.++..
T Consensus 229 ~~-lYvfGG~~~~~~~ndv~~yD~~t~--~W~~l~~~~~~P~~R~~h~~~~~~-~~iYv~GG~~~~-~~~~~~~~yd~~- 302 (470)
T PLN02193 229 ST-LYVFGGRDASRQYNGFYSFDTTTN--EWKLLTPVEEGPTPRSFHSMAADE-ENVYVFGGVSAT-ARLKTLDSYNIV- 302 (470)
T ss_pred CE-EEEECCCCCCCCCccEEEEECCCC--EEEEcCcCCCCCCCccceEEEEEC-CEEEEECCCCCC-CCcceEEEEECC-
Confidence 65 999999988888999999999998 999998776678999999988765 569999999764 457888888776
Q ss_pred CCeEEEEeCCCCCCCcccceEEEEECCEEEEEcccCCCCCCCCCCceEEEEECCCCcEEEcccCccCCCCCCCCCCCCCC
Q 003577 168 NGQWEWTLAPGVAPSPRYQHAAVFVGARLHVTGGALRGGRAIEGEAAVAVLDTAAGVWLDRNGLVTSSRTSKGHGEHDPS 247 (810)
Q Consensus 168 ~~~W~~~~~~g~~P~~R~~hsav~~~~~l~V~GG~~~~~~~~~~~~~l~~yD~~t~~W~~v~~~~~~~~~~~~~~~~~~~ 247 (810)
+.+|+.+..++..|.+|.+|+++.+++++||+||.... ..+++++||+.+++|+.+... +
T Consensus 303 t~~W~~~~~~~~~~~~R~~~~~~~~~gkiyviGG~~g~-----~~~dv~~yD~~t~~W~~~~~~---------------g 362 (470)
T PLN02193 303 DKKWFHCSTPGDSFSIRGGAGLEVVQGKVWVVYGFNGC-----EVDDVHYYDPVQDKWTQVETF---------------G 362 (470)
T ss_pred CCEEEeCCCCCCCCCCCCCcEEEEECCcEEEEECCCCC-----ccCceEEEECCCCEEEEeccC---------------C
Confidence 55999887777778999999999999999999997532 257799999999999998754 2
Q ss_pred CCCCcceeeEEEEeCCEEEEEcCCCC---------CCCCCcEEEEeCCCCcccCCCCCC
Q 003577 248 LELMRRCRHASASIGVRIYIYGGLKG---------DILLDDFLVAENSPFQSDVNSPLL 297 (810)
Q Consensus 248 ~~p~~R~~hs~~~~~~~i~I~GG~~~---------~~~~~Dl~~ld~~~~~~~~~~~~~ 297 (810)
..|.+|..|++++++++||||||... ..+++|+|+||+.+.+|+....+.
T Consensus 363 ~~P~~R~~~~~~~~~~~iyv~GG~~~~~~~~~~~~~~~~ndv~~~D~~t~~W~~~~~~~ 421 (470)
T PLN02193 363 VRPSERSVFASAAVGKHIVIFGGEIAMDPLAHVGPGQLTDGTFALDTETLQWERLDKFG 421 (470)
T ss_pred CCCCCcceeEEEEECCEEEEECCccCCccccccCccceeccEEEEEcCcCEEEEcccCC
Confidence 34678999999999999999999753 246789999999999999776544
No 20
>KOG4693 consensus Uncharacterized conserved protein, contains kelch repeat [General function prediction only]
Probab=100.00 E-value=2.2e-34 Score=285.04 Aligned_cols=249 Identities=22% Similarity=0.349 Sum_probs=214.9
Q ss_pred eEEEecCCCcEEEecCC----------CCCCccccccEEEEECCEEEEECccCCCCCccCcEEEEEccCCceEEEEEeec
Q 003577 2 MFSLENGPAGVCRIRPA----------GEPPSPRAAHAAAAVGTMVVFQGGIGPAGHSTDDLYVLDLTNDKFKWHRVVVQ 71 (810)
Q Consensus 2 l~~~~~~t~~W~~l~~~----------g~~P~~R~~haa~~~~~~lyv~GG~~~~~~~~~dl~~lDl~t~~~~W~~v~~~ 71 (810)
++.++..+.+|+++.+. +-.|-.|.+|+.+.+++++|+.||.+......|-+|+||++++ +|.+..++
T Consensus 46 VH~lNa~~~RWtk~pp~~~ka~i~~~yp~VPyqRYGHtvV~y~d~~yvWGGRND~egaCN~Ly~fDp~t~--~W~~p~v~ 123 (392)
T KOG4693|consen 46 VHVLNAENYRWTKMPPGITKATIESPYPAVPYQRYGHTVVEYQDKAYVWGGRNDDEGACNLLYEFDPETN--VWKKPEVE 123 (392)
T ss_pred eEEeeccceeEEecCcccccccccCCCCccchhhcCceEEEEcceEEEEcCccCcccccceeeeeccccc--ccccccee
Confidence 56788899999999762 1245569999999999999999999977778899999999995 49999999
Q ss_pred CCCCCcccccEEEEECCcEEEEEccCC--CCCCCCcEEEEecCCCCcEEEEecCCCCCCCcccceEEEEeCCcEEEEEcc
Q 003577 72 GQGPGPRYGHVMDLVSQRYLVSVSGND--GKRVLSDAWALDTAQKPYVWQRLNPEGDRPSARMYATASARSDGMFLLCGG 149 (810)
Q Consensus 72 g~~P~~R~~Hs~~~v~~~~l~VfGG~~--g~~~~ndv~~yd~~~~~~~W~~i~~~g~~P~~R~~hsa~~~~~~~l~v~GG 149 (810)
|-.|+.|.+|++|++++. +|||||+. .....+|++.||+.+- +|+.+...+..|.-|..|+++++. ++||||||
T Consensus 124 G~vPgaRDGHsAcV~gn~-MyiFGGye~~a~~FS~d~h~ld~~Tm--tWr~~~Tkg~PprwRDFH~a~~~~-~~MYiFGG 199 (392)
T KOG4693|consen 124 GFVPGARDGHSACVWGNQ-MYIFGGYEEDAQRFSQDTHVLDFATM--TWREMHTKGDPPRWRDFHTASVID-GMMYIFGG 199 (392)
T ss_pred eecCCccCCceeeEECcE-EEEecChHHHHHhhhccceeEeccce--eeeehhccCCCchhhhhhhhhhcc-ceEEEecc
Confidence 999999999999999975 99999984 4457889999999666 999999999999999999999886 78999999
Q ss_pred cCCC-------CCccccEEEEEeCCCCeEEEEeCCCCCCCcccceEEEEECCEEEEEcccCCCCCCCCCCceEEEEECCC
Q 003577 150 RDAS-------GAPLADAYGLLMHRNGQWEWTLAPGVAPSPRYQHAAVFVGARLHVTGGALRGGRAIEGEAAVAVLDTAA 222 (810)
Q Consensus 150 ~~~~-------g~~l~d~~~l~~~~~~~W~~~~~~g~~P~~R~~hsav~~~~~l~V~GG~~~~~~~~~~~~~l~~yD~~t 222 (810)
+... .+.+.|.....+..++.|......+..|.+|..|++..++++||+|||+.+.. ....+++|+||+.+
T Consensus 200 R~D~~gpfHs~~e~Yc~~i~~ld~~T~aW~r~p~~~~~P~GRRSHS~fvYng~~Y~FGGYng~l--n~HfndLy~FdP~t 277 (392)
T KOG4693|consen 200 RSDESGPFHSIHEQYCDTIMALDLATGAWTRTPENTMKPGGRRSHSTFVYNGKMYMFGGYNGTL--NVHFNDLYCFDPKT 277 (392)
T ss_pred ccccCCCccchhhhhcceeEEEeccccccccCCCCCcCCCcccccceEEEcceEEEecccchhh--hhhhcceeeccccc
Confidence 9754 24455666666667889998888888999999999999999999999997643 34578999999999
Q ss_pred CcEEEcccCccCCCCCCCCCCCCCCCCCCcceeeEEEEeCCEEEEEcCCCC
Q 003577 223 GVWLDRNGLVTSSRTSKGHGEHDPSLELMRRCRHASASIGVRIYIYGGLKG 273 (810)
Q Consensus 223 ~~W~~v~~~~~~~~~~~~~~~~~~~~~p~~R~~hs~~~~~~~i~I~GG~~~ 273 (810)
..|..+... +..|.+|-++++++.|+++|+|||.+.
T Consensus 278 ~~W~~I~~~---------------Gk~P~aRRRqC~~v~g~kv~LFGGTsP 313 (392)
T KOG4693|consen 278 SMWSVISVR---------------GKYPSARRRQCSVVSGGKVYLFGGTSP 313 (392)
T ss_pred chheeeecc---------------CCCCCcccceeEEEECCEEEEecCCCC
Confidence 999998866 456889999999999999999999654
No 21
>PLN02153 epithiospecifier protein
Probab=100.00 E-value=7.3e-33 Score=305.67 Aligned_cols=266 Identities=24% Similarity=0.365 Sum_probs=212.1
Q ss_pred cCCCcEEEecCC-CCCCccccccEEEEECCEEEEECccCCC-CCccCcEEEEEccCCceEEEEEeecCCCCCc-ccccEE
Q 003577 7 NGPAGVCRIRPA-GEPPSPRAAHAAAAVGTMVVFQGGIGPA-GHSTDDLYVLDLTNDKFKWHRVVVQGQGPGP-RYGHVM 83 (810)
Q Consensus 7 ~~t~~W~~l~~~-g~~P~~R~~haa~~~~~~lyv~GG~~~~-~~~~~dl~~lDl~t~~~~W~~v~~~g~~P~~-R~~Hs~ 83 (810)
+...+|.++.+. +..|.||.+|+++++++.|||+||.... ....+++|+||+.++ +|.++++.+..|.. +.+|++
T Consensus 4 ~~~~~W~~~~~~~~~~P~pR~~h~~~~~~~~iyv~GG~~~~~~~~~~~~~~yd~~~~--~W~~~~~~~~~p~~~~~~~~~ 81 (341)
T PLN02153 4 TLQGGWIKVEQKGGKGPGPRCSHGIAVVGDKLYSFGGELKPNEHIDKDLYVFDFNTH--TWSIAPANGDVPRISCLGVRM 81 (341)
T ss_pred ccCCeEEEecCCCCCCCCCCCcceEEEECCEEEEECCccCCCCceeCcEEEEECCCC--EEEEcCccCCCCCCccCceEE
Confidence 356789999764 4579999999999999999999998532 334689999999995 59998876655543 558999
Q ss_pred EEECCcEEEEEccCCCCCCCCcEEEEecCCCCcEEEEecCC--CCCCCcccceEEEEeCCcEEEEEcccCCCC-----Cc
Q 003577 84 DLVSQRYLVSVSGNDGKRVLSDAWALDTAQKPYVWQRLNPE--GDRPSARMYATASARSDGMFLLCGGRDASG-----AP 156 (810)
Q Consensus 84 ~~v~~~~l~VfGG~~g~~~~ndv~~yd~~~~~~~W~~i~~~--g~~P~~R~~hsa~~~~~~~l~v~GG~~~~g-----~~ 156 (810)
++++++ ||||||.+....++++|+||+.++ +|+++... ...|.+|..|++++.. ++|||+||.+..+ ..
T Consensus 82 ~~~~~~-iyv~GG~~~~~~~~~v~~yd~~t~--~W~~~~~~~~~~~p~~R~~~~~~~~~-~~iyv~GG~~~~~~~~~~~~ 157 (341)
T PLN02153 82 VAVGTK-LYIFGGRDEKREFSDFYSYDTVKN--EWTFLTKLDEEGGPEARTFHSMASDE-NHVYVFGGVSKGGLMKTPER 157 (341)
T ss_pred EEECCE-EEEECCCCCCCccCcEEEEECCCC--EEEEeccCCCCCCCCCceeeEEEEEC-CEEEEECCccCCCccCCCcc
Confidence 888875 999999988888899999999988 99988653 2248899999988665 5599999987542 23
Q ss_pred cccEEEEEeCCCCeEEEEeCCCCCCCcccceEEEEECCEEEEEcccCCC----CCCCCCCceEEEEECCCCcEEEcccCc
Q 003577 157 LADAYGLLMHRNGQWEWTLAPGVAPSPRYQHAAVFVGARLHVTGGALRG----GRAIEGEAAVAVLDTAAGVWLDRNGLV 232 (810)
Q Consensus 157 l~d~~~l~~~~~~~W~~~~~~g~~P~~R~~hsav~~~~~l~V~GG~~~~----~~~~~~~~~l~~yD~~t~~W~~v~~~~ 232 (810)
+++++.|+.. +.+|+.+...+..|.+|.+|+++.++++|||+||.... +......+++++||+++++|+++...
T Consensus 158 ~~~v~~yd~~-~~~W~~l~~~~~~~~~r~~~~~~~~~~~iyv~GG~~~~~~~gG~~~~~~~~v~~yd~~~~~W~~~~~~- 235 (341)
T PLN02153 158 FRTIEAYNIA-DGKWVQLPDPGENFEKRGGAGFAVVQGKIWVVYGFATSILPGGKSDYESNAVQFFDPASGKWTEVETT- 235 (341)
T ss_pred cceEEEEECC-CCeEeeCCCCCCCCCCCCcceEEEECCeEEEEeccccccccCCccceecCceEEEEcCCCcEEecccc-
Confidence 5678887776 55899887777678899999999999999999997531 11111257799999999999998754
Q ss_pred cCCCCCCCCCCCCCCCCCCcceeeEEEEeCCEEEEEcCCC---------CCCCCCcEEEEeCCCCcccCCC
Q 003577 233 TSSRTSKGHGEHDPSLELMRRCRHASASIGVRIYIYGGLK---------GDILLDDFLVAENSPFQSDVNS 294 (810)
Q Consensus 233 ~~~~~~~~~~~~~~~~~p~~R~~hs~~~~~~~i~I~GG~~---------~~~~~~Dl~~ld~~~~~~~~~~ 294 (810)
+..|.+|..|++++++++||||||.. ....++|+|+||+++..|+...
T Consensus 236 --------------g~~P~~r~~~~~~~~~~~iyv~GG~~~~~~~~~~~~~~~~n~v~~~d~~~~~W~~~~ 292 (341)
T PLN02153 236 --------------GAKPSARSVFAHAVVGKYIIIFGGEVWPDLKGHLGPGTLSNEGYALDTETLVWEKLG 292 (341)
T ss_pred --------------CCCCCCcceeeeEEECCEEEEECcccCCccccccccccccccEEEEEcCccEEEecc
Confidence 23477899999999999999999963 2356789999999999998654
No 22
>PLN02193 nitrile-specifier protein
Probab=100.00 E-value=2.8e-32 Score=312.51 Aligned_cols=264 Identities=19% Similarity=0.232 Sum_probs=215.5
Q ss_pred eEEEecCCCcEEEecCCCCCCc-cccccEEEEECCEEEEECccCCCCCccCcEEEEEccCCceEEEEEeecCCCCCcccc
Q 003577 2 MFSLENGPAGVCRIRPAGEPPS-PRAAHAAAAVGTMVVFQGGIGPAGHSTDDLYVLDLTNDKFKWHRVVVQGQGPGPRYG 80 (810)
Q Consensus 2 l~~~~~~t~~W~~l~~~g~~P~-~R~~haa~~~~~~lyv~GG~~~~~~~~~dl~~lDl~t~~~~W~~v~~~g~~P~~R~~ 80 (810)
+|.||+.+++|+.+.+.+..|. +|.+|+++.++++||+|||.... ..++++|+||+.+ .+|.++.+.+..|.+|++
T Consensus 195 v~~yD~~~~~W~~~~~~g~~P~~~~~~~~~v~~~~~lYvfGG~~~~-~~~ndv~~yD~~t--~~W~~l~~~~~~P~~R~~ 271 (470)
T PLN02193 195 LYVFDLETRTWSISPATGDVPHLSCLGVRMVSIGSTLYVFGGRDAS-RQYNGFYSFDTTT--NEWKLLTPVEEGPTPRSF 271 (470)
T ss_pred EEEEECCCCEEEeCCCCCCCCCCcccceEEEEECCEEEEECCCCCC-CCCccEEEEECCC--CEEEEcCcCCCCCCCccc
Confidence 7999999999999877776665 47899999999999999998743 4679999999998 459999887667999999
Q ss_pred cEEEEECCcEEEEEccCCCCCCCCcEEEEecCCCCcEEEEecCCCCCCCcccceEEEEeCCcEEEEEcccCCCCCccccE
Q 003577 81 HVMDLVSQRYLVSVSGNDGKRVLSDAWALDTAQKPYVWQRLNPEGDRPSARMYATASARSDGMFLLCGGRDASGAPLADA 160 (810)
Q Consensus 81 Hs~~~v~~~~l~VfGG~~g~~~~ndv~~yd~~~~~~~W~~i~~~g~~P~~R~~hsa~~~~~~~l~v~GG~~~~g~~l~d~ 160 (810)
|+++++++ .||||||.+....++++++||+.++ +|+.+...+..|.+|.+|+++++.+ ++|++||.+. ..++|+
T Consensus 272 h~~~~~~~-~iYv~GG~~~~~~~~~~~~yd~~t~--~W~~~~~~~~~~~~R~~~~~~~~~g-kiyviGG~~g--~~~~dv 345 (470)
T PLN02193 272 HSMAADEE-NVYVFGGVSATARLKTLDSYNIVDK--KWFHCSTPGDSFSIRGGAGLEVVQG-KVWVVYGFNG--CEVDDV 345 (470)
T ss_pred eEEEEECC-EEEEECCCCCCCCcceEEEEECCCC--EEEeCCCCCCCCCCCCCcEEEEECC-cEEEEECCCC--CccCce
Confidence 99988876 4999999988888999999999998 9999987777888999999988755 5888888754 347899
Q ss_pred EEEEeCCCCeEEEEeCCCCCCCcccceEEEEECCEEEEEcccCCCCC-----CCCCCceEEEEECCCCcEEEcccCccCC
Q 003577 161 YGLLMHRNGQWEWTLAPGVAPSPRYQHAAVFVGARLHVTGGALRGGR-----AIEGEAAVAVLDTAAGVWLDRNGLVTSS 235 (810)
Q Consensus 161 ~~l~~~~~~~W~~~~~~g~~P~~R~~hsav~~~~~l~V~GG~~~~~~-----~~~~~~~l~~yD~~t~~W~~v~~~~~~~ 235 (810)
|.|+.. +.+|+.+...+..|.+|..|+++.++++|||+||...... .....+++++||+.+++|+.+.....
T Consensus 346 ~~yD~~-t~~W~~~~~~g~~P~~R~~~~~~~~~~~iyv~GG~~~~~~~~~~~~~~~~ndv~~~D~~t~~W~~~~~~~~-- 422 (470)
T PLN02193 346 HYYDPV-QDKWTQVETFGVRPSERSVFASAAVGKHIVIFGGEIAMDPLAHVGPGQLTDGTFALDTETLQWERLDKFGE-- 422 (470)
T ss_pred EEEECC-CCEEEEeccCCCCCCCcceeEEEEECCEEEEECCccCCccccccCccceeccEEEEEcCcCEEEEcccCCC--
Confidence 999886 4599998877788999999999999999999999864211 11235789999999999999875411
Q ss_pred CCCCCCCCCCCCCCCCcceeeEEE--Ee-C-CEEEEEcCCCC-CCCCCcEEEEeCCC
Q 003577 236 RTSKGHGEHDPSLELMRRCRHASA--SI-G-VRIYIYGGLKG-DILLDDFLVAENSP 287 (810)
Q Consensus 236 ~~~~~~~~~~~~~~p~~R~~hs~~--~~-~-~~i~I~GG~~~-~~~~~Dl~~ld~~~ 287 (810)
...+|.+|..|+++ .+ + +.|+||||+++ ...++|+|+|++++
T Consensus 423 ----------~~~~P~~R~~~~~~~~~~~~~~~~~~fGG~~~~~~~~~D~~~~~~~~ 469 (470)
T PLN02193 423 ----------EEETPSSRGWTASTTGTIDGKKGLVMHGGKAPTNDRFDDLFFYGIDS 469 (470)
T ss_pred ----------CCCCCCCCccccceeeEEcCCceEEEEcCCCCccccccceEEEecCC
Confidence 12346778766532 23 3 56999999875 57899999999875
No 23
>KOG0379 consensus Kelch repeat-containing proteins [General function prediction only]
Probab=100.00 E-value=5.6e-32 Score=309.31 Aligned_cols=266 Identities=30% Similarity=0.441 Sum_probs=232.1
Q ss_pred CCCCCCccccccEEEEECCEEEEECccCCCCCccC-cEEEEEccCCceEEEEEeecCCCCCcccccEEEEECCcEEEEEc
Q 003577 17 PAGEPPSPRAAHAAAAVGTMVVFQGGIGPAGHSTD-DLYVLDLTNDKFKWHRVVVQGQGPGPRYGHVMDLVSQRYLVSVS 95 (810)
Q Consensus 17 ~~g~~P~~R~~haa~~~~~~lyv~GG~~~~~~~~~-dl~~lDl~t~~~~W~~v~~~g~~P~~R~~Hs~~~v~~~~l~VfG 95 (810)
..+..|.+|++|+++.+++++|||||.+......+ |+|++|+.+ ..|.+....|..|.+|++|+++.+++ .||+||
T Consensus 53 ~~~~~p~~R~~hs~~~~~~~~~vfGG~~~~~~~~~~dl~~~d~~~--~~w~~~~~~g~~p~~r~g~~~~~~~~-~l~lfG 129 (482)
T KOG0379|consen 53 VLGVGPIPRAGHSAVLIGNKLYVFGGYGSGDRLTDLDLYVLDLES--QLWTKPAATGDEPSPRYGHSLSAVGD-KLYLFG 129 (482)
T ss_pred cCCCCcchhhccceeEECCEEEEECCCCCCCccccceeEEeecCC--cccccccccCCCCCcccceeEEEECC-eEEEEc
Confidence 45678999999999999999999999986554444 699999998 66999999999999999999999996 599999
Q ss_pred cCCC-CCCCCcEEEEecCCCCcEEEEecCCCCCCCcccceEEEEeCCcEEEEEcccCCCCCccccEEEEEeCCCCeEEEE
Q 003577 96 GNDG-KRVLSDAWALDTAQKPYVWQRLNPEGDRPSARMYATASARSDGMFLLCGGRDASGAPLADAYGLLMHRNGQWEWT 174 (810)
Q Consensus 96 G~~g-~~~~ndv~~yd~~~~~~~W~~i~~~g~~P~~R~~hsa~~~~~~~l~v~GG~~~~g~~l~d~~~l~~~~~~~W~~~ 174 (810)
|.+. ...++++|.||+.+. +|+.+.+.+..|++|.+|++++++ .++|||||.+..+..++|+|.|+.... +|..+
T Consensus 130 G~~~~~~~~~~l~~~d~~t~--~W~~l~~~~~~P~~r~~Hs~~~~g-~~l~vfGG~~~~~~~~ndl~i~d~~~~-~W~~~ 205 (482)
T KOG0379|consen 130 GTDKKYRNLNELHSLDLSTR--TWSLLSPTGDPPPPRAGHSATVVG-TKLVVFGGIGGTGDSLNDLHIYDLETS-TWSEL 205 (482)
T ss_pred cccCCCCChhheEeccCCCC--cEEEecCcCCCCCCcccceEEEEC-CEEEEECCccCcccceeeeeeeccccc-cceec
Confidence 9984 667899999999999 999999999999999999999888 669999999988778999999999755 79999
Q ss_pred eCCCCCCCcccceEEEEECCEEEEEcccCCCCCCCCCCceEEEEECCCCcEEEcccCccCCCCCCCCCCCCCCCCCCcce
Q 003577 175 LAPGVAPSPRYQHAAVFVGARLHVTGGALRGGRAIEGEAAVAVLDTAAGVWLDRNGLVTSSRTSKGHGEHDPSLELMRRC 254 (810)
Q Consensus 175 ~~~g~~P~~R~~hsav~~~~~l~V~GG~~~~~~~~~~~~~l~~yD~~t~~W~~v~~~~~~~~~~~~~~~~~~~~~p~~R~ 254 (810)
...+..|.||++|+++.++++++|+||.... ...++|+|+||+.+..|..+... +..|.+|+
T Consensus 206 ~~~g~~P~pR~gH~~~~~~~~~~v~gG~~~~---~~~l~D~~~ldl~~~~W~~~~~~---------------g~~p~~R~ 267 (482)
T KOG0379|consen 206 DTQGEAPSPRYGHAMVVVGNKLLVFGGGDDG---DVYLNDVHILDLSTWEWKLLPTG---------------GDLPSPRS 267 (482)
T ss_pred ccCCCCCCCCCCceEEEECCeEEEEeccccC---CceecceEeeecccceeeecccc---------------CCCCCCcc
Confidence 9999999999999999999999999999732 23578899999999999977655 45688999
Q ss_pred eeEEEEeCCEEEEEcCCCCC-C-CCCcEEEEeCCCCcccCCCCCC--CCCCCCCCcC
Q 003577 255 RHASASIGVRIYIYGGLKGD-I-LLDDFLVAENSPFQSDVNSPLL--TSERAPTHTG 307 (810)
Q Consensus 255 ~hs~~~~~~~i~I~GG~~~~-~-~~~Dl~~ld~~~~~~~~~~~~~--~~~~~~~~~~ 307 (810)
+|+.+..+.+++|+||.... . .+.|+|.|+.++..|....... .+.++..++.
T Consensus 268 ~h~~~~~~~~~~l~gG~~~~~~~~l~~~~~l~~~~~~w~~~~~~~~~~~~~~~~~~~ 324 (482)
T KOG0379|consen 268 GHSLTVSGDHLLLFGGGTDPKQEPLGDLYGLDLETLVWSKVESVGVVRPSPRLGHAA 324 (482)
T ss_pred eeeeEEECCEEEEEcCCcccccccccccccccccccceeeeeccccccccccccccc
Confidence 99999999999999998774 3 7999999999998888776665 4455555544
No 24
>KOG4693 consensus Uncharacterized conserved protein, contains kelch repeat [General function prediction only]
Probab=100.00 E-value=3.1e-32 Score=269.79 Aligned_cols=263 Identities=21% Similarity=0.304 Sum_probs=217.1
Q ss_pred cEEEecCCCCCCccccccEEEEECCEEEEECccCCCCC----ccCcEEEEEccCCceEEEEEeec-------C---CCCC
Q 003577 11 GVCRIRPAGEPPSPRAAHAAAAVGTMVVFQGGIGPAGH----STDDLYVLDLTNDKFKWHRVVVQ-------G---QGPG 76 (810)
Q Consensus 11 ~W~~l~~~g~~P~~R~~haa~~~~~~lyv~GG~~~~~~----~~~dl~~lDl~t~~~~W~~v~~~-------g---~~P~ 76 (810)
.|+.--..| +.|..|+++.++..||.|||+..+.. .-=|+++|+..+ .+|+++++. + -.|-
T Consensus 3 ~WTVHLeGG---PrRVNHAavaVG~riYSFGGYCsGedy~~~~piDVH~lNa~~--~RWtk~pp~~~ka~i~~~yp~VPy 77 (392)
T KOG4693|consen 3 TWTVHLEGG---PRRVNHAAVAVGSRIYSFGGYCSGEDYDAKDPIDVHVLNAEN--YRWTKMPPGITKATIESPYPAVPY 77 (392)
T ss_pred eEEEEecCC---cccccceeeeecceEEecCCcccccccccCCcceeEEeeccc--eeEEecCcccccccccCCCCccch
Confidence 575432233 58999999999999999999864321 123788999888 889999772 1 2367
Q ss_pred cccccEEEEECCcEEEEEccCCC-CCCCCcEEEEecCCCCcEEEEecCCCCCCCcccceEEEEeCCcEEEEEcccCCC-C
Q 003577 77 PRYGHVMDLVSQRYLVSVSGNDG-KRVLSDAWALDTAQKPYVWQRLNPEGDRPSARMYATASARSDGMFLLCGGRDAS-G 154 (810)
Q Consensus 77 ~R~~Hs~~~v~~~~l~VfGG~~g-~~~~ndv~~yd~~~~~~~W~~i~~~g~~P~~R~~hsa~~~~~~~l~v~GG~~~~-g 154 (810)
.||+|+.+.+.++ +||.||.++ ...-|-+++||++++ +|++..-.|-.|.+|.+|+|++.++. ||||||+..+ .
T Consensus 78 qRYGHtvV~y~d~-~yvWGGRND~egaCN~Ly~fDp~t~--~W~~p~v~G~vPgaRDGHsAcV~gn~-MyiFGGye~~a~ 153 (392)
T KOG4693|consen 78 QRYGHTVVEYQDK-AYVWGGRNDDEGACNLLYEFDPETN--VWKKPEVEGFVPGARDGHSACVWGNQ-MYIFGGYEEDAQ 153 (392)
T ss_pred hhcCceEEEEcce-EEEEcCccCcccccceeeeeccccc--cccccceeeecCCccCCceeeEECcE-EEEecChHHHHH
Confidence 7999999999876 999999866 567899999999999 99999999999999999999998766 9999999765 3
Q ss_pred CccccEEEEEeCCCCeEEEEeCCCCCCCcccceEEEEECCEEEEEcccCCCCCC-----CCCCceEEEEECCCCcEEEcc
Q 003577 155 APLADAYGLLMHRNGQWEWTLAPGVAPSPRYQHAAVFVGARLHVTGGALRGGRA-----IEGEAAVAVLDTAAGVWLDRN 229 (810)
Q Consensus 155 ~~l~d~~~l~~~~~~~W~~~~~~g~~P~~R~~hsav~~~~~l~V~GG~~~~~~~-----~~~~~~l~~yD~~t~~W~~v~ 229 (810)
...+|++.++.. +.+|..+...+.+|.-|..|+++++++.||||||+.+.... ..+.+.+..+|+.|..|...+
T Consensus 154 ~FS~d~h~ld~~-TmtWr~~~Tkg~PprwRDFH~a~~~~~~MYiFGGR~D~~gpfHs~~e~Yc~~i~~ld~~T~aW~r~p 232 (392)
T KOG4693|consen 154 RFSQDTHVLDFA-TMTWREMHTKGDPPRWRDFHTASVIDGMMYIFGGRSDESGPFHSIHEQYCDTIMALDLATGAWTRTP 232 (392)
T ss_pred hhhccceeEecc-ceeeeehhccCCCchhhhhhhhhhccceEEEeccccccCCCccchhhhhcceeEEEeccccccccCC
Confidence 456777888775 56999999999999999999999999999999999765432 223677899999999999875
Q ss_pred cCccCCCCCCCCCCCCCCCCCCcceeeEEEEeCCEEEEEcCCCCC--CCCCcEEEEeCCCCcccCCCCCCC
Q 003577 230 GLVTSSRTSKGHGEHDPSLELMRRCRHASASIGVRIYIYGGLKGD--ILLDDFLVAENSPFQSDVNSPLLT 298 (810)
Q Consensus 230 ~~~~~~~~~~~~~~~~~~~~p~~R~~hs~~~~~~~i~I~GG~~~~--~~~~Dl~~ld~~~~~~~~~~~~~~ 298 (810)
.. ...|..|-+|+++.++++||+|||+++. .-++|+|+||..+..|..+++.-.
T Consensus 233 ~~---------------~~~P~GRRSHS~fvYng~~Y~FGGYng~ln~HfndLy~FdP~t~~W~~I~~~Gk 288 (392)
T KOG4693|consen 233 EN---------------TMKPGGRRSHSTFVYNGKMYMFGGYNGTLNVHFNDLYCFDPKTSMWSVISVRGK 288 (392)
T ss_pred CC---------------CcCCCcccccceEEEcceEEEecccchhhhhhhcceeecccccchheeeeccCC
Confidence 44 3347788899999999999999999985 678999999999999998776543
No 25
>KOG4152 consensus Host cell transcription factor HCFC1 [Cell cycle control, cell division, chromosome partitioning; Transcription]
Probab=100.00 E-value=9.7e-33 Score=293.24 Aligned_cols=269 Identities=24% Similarity=0.374 Sum_probs=228.6
Q ss_pred eEEEecCCCcEEEecCCCCCCccccccEEEEECCEEEEECccCCCCCccCcEEEEEccCCceEEEEEee----cCCCCCc
Q 003577 2 MFSLENGPAGVCRIRPAGEPPSPRAAHAAAAVGTMVVFQGGIGPAGHSTDDLYVLDLTNDKFKWHRVVV----QGQGPGP 77 (810)
Q Consensus 2 l~~~~~~t~~W~~l~~~g~~P~~R~~haa~~~~~~lyv~GG~~~~~~~~~dl~~lDl~t~~~~W~~v~~----~g~~P~~ 77 (810)
|+.|++.+++|.--...|+.|++.++|.+++.+++||+|||+...+..+||+|.+.-.. |+|+++.+ .|.+|-|
T Consensus 59 LHvYNTatnqWf~PavrGDiPpgcAA~GfvcdGtrilvFGGMvEYGkYsNdLYELQasR--WeWkrlkp~~p~nG~pPCP 136 (830)
T KOG4152|consen 59 LHVYNTATNQWFAPAVRGDIPPGCAAFGFVCDGTRILVFGGMVEYGKYSNDLYELQASR--WEWKRLKPKTPKNGPPPCP 136 (830)
T ss_pred hhhhccccceeecchhcCCCCCchhhcceEecCceEEEEccEeeeccccchHHHhhhhh--hhHhhcCCCCCCCCCCCCC
Confidence 67899999999998889999999999999999999999999999999999999877666 89999854 4788999
Q ss_pred ccccEEEEECCcEEEEEccCC---------CCCCCCcEEEEecCCCC--cEEEEecCCCCCCCcccceEEEEeC-----C
Q 003577 78 RYGHVMDLVSQRYLVSVSGND---------GKRVLSDAWALDTAQKP--YVWQRLNPEGDRPSARMYATASARS-----D 141 (810)
Q Consensus 78 R~~Hs~~~v~~~~l~VfGG~~---------g~~~~ndv~~yd~~~~~--~~W~~i~~~g~~P~~R~~hsa~~~~-----~ 141 (810)
|.+|+.++++++ .|+|||.. -.+++||+|++++.-.+ ..|......|..|.+|-+|+++.+. .
T Consensus 137 RlGHSFsl~gnK-cYlFGGLaNdseDpknNvPrYLnDlY~leL~~Gsgvv~W~ip~t~Gv~P~pRESHTAViY~eKDs~~ 215 (830)
T KOG4152|consen 137 RLGHSFSLVGNK-CYLFGGLANDSEDPKNNVPRYLNDLYILELRPGSGVVAWDIPITYGVLPPPRESHTAVIYTEKDSKK 215 (830)
T ss_pred ccCceeEEeccE-eEEeccccccccCcccccchhhcceEEEEeccCCceEEEecccccCCCCCCcccceeEEEEeccCCc
Confidence 999999999976 89999952 23479999999996443 6799999999999999999999872 2
Q ss_pred cEEEEEcccCCCCCccccEEEEEeCCCCeEEEEeCCCCCCCcccceEEEEECCEEEEEcccCCCCC----------CCCC
Q 003577 142 GMFLLCGGRDASGAPLADAYGLLMHRNGQWEWTLAPGVAPSPRYQHAAVFVGARLHVTGGALRGGR----------AIEG 211 (810)
Q Consensus 142 ~~l~v~GG~~~~g~~l~d~~~l~~~~~~~W~~~~~~g~~P~~R~~hsav~~~~~l~V~GG~~~~~~----------~~~~ 211 (810)
.+||||||+++ .++.|+|.++.. +.+|.+....|..|.||.-|+++.++++||||||...... .-..
T Consensus 216 skmvvyGGM~G--~RLgDLW~Ldl~-Tl~W~kp~~~G~~PlPRSLHsa~~IGnKMyvfGGWVPl~~~~~~~~~hekEWkC 292 (830)
T KOG4152|consen 216 SKMVVYGGMSG--CRLGDLWTLDLD-TLTWNKPSLSGVAPLPRSLHSATTIGNKMYVFGGWVPLVMDDVKVATHEKEWKC 292 (830)
T ss_pred ceEEEEccccc--ccccceeEEecc-eeecccccccCCCCCCcccccceeecceeEEecceeeeeccccccccccceeee
Confidence 47999999975 689999999987 5699999999999999999999999999999999853110 0112
Q ss_pred CceEEEEECCCCcEEEcccCccCCCCCCCCCCCCCCCCCCcceeeEEEEeCCEEEEEcCCCC-------CCCCCcEEEEe
Q 003577 212 EAAVAVLDTAAGVWLDRNGLVTSSRTSKGHGEHDPSLELMRRCRHASASIGVRIYIYGGLKG-------DILLDDFLVAE 284 (810)
Q Consensus 212 ~~~l~~yD~~t~~W~~v~~~~~~~~~~~~~~~~~~~~~p~~R~~hs~~~~~~~i~I~GG~~~-------~~~~~Dl~~ld 284 (810)
.+.+-++|+.+..|..+-..+.. ....|++|.+|+++++|.++||+.|.+| ..+..|+|.||
T Consensus 293 Tssl~clNldt~~W~tl~~d~~e-----------d~tiPR~RAGHCAvAigtRlYiWSGRDGYrKAwnnQVCCkDlWyLd 361 (830)
T KOG4152|consen 293 TSSLACLNLDTMAWETLLMDTLE-----------DNTIPRARAGHCAVAIGTRLYIWSGRDGYRKAWNNQVCCKDLWYLD 361 (830)
T ss_pred ccceeeeeecchheeeeeecccc-----------ccccccccccceeEEeccEEEEEeccchhhHhhccccchhhhhhhc
Confidence 67889999999999987655221 1225889999999999999999999876 47789999999
Q ss_pred CCC
Q 003577 285 NSP 287 (810)
Q Consensus 285 ~~~ 287 (810)
++.
T Consensus 362 Tek 364 (830)
T KOG4152|consen 362 TEK 364 (830)
T ss_pred ccC
Confidence 865
No 26
>PLN02153 epithiospecifier protein
Probab=100.00 E-value=6.9e-31 Score=289.94 Aligned_cols=265 Identities=18% Similarity=0.193 Sum_probs=203.2
Q ss_pred eEEEecCCCcEEEecCCCCCCc-cccccEEEEECCEEEEECccCCCCCccCcEEEEEccCCceEEEEEeec--CCCCCcc
Q 003577 2 MFSLENGPAGVCRIRPAGEPPS-PRAAHAAAAVGTMVVFQGGIGPAGHSTDDLYVLDLTNDKFKWHRVVVQ--GQGPGPR 78 (810)
Q Consensus 2 l~~~~~~t~~W~~l~~~g~~P~-~R~~haa~~~~~~lyv~GG~~~~~~~~~dl~~lDl~t~~~~W~~v~~~--g~~P~~R 78 (810)
+|.||+.+++|+++.+.+..|. .+.+|++++++++||+|||.... ...+++|+||+.++ +|..+.+. ...|.+|
T Consensus 52 ~~~yd~~~~~W~~~~~~~~~p~~~~~~~~~~~~~~~iyv~GG~~~~-~~~~~v~~yd~~t~--~W~~~~~~~~~~~p~~R 128 (341)
T PLN02153 52 LYVFDFNTHTWSIAPANGDVPRISCLGVRMVAVGTKLYIFGGRDEK-REFSDFYSYDTVKN--EWTFLTKLDEEGGPEAR 128 (341)
T ss_pred EEEEECCCCEEEEcCccCCCCCCccCceEEEEECCEEEEECCCCCC-CccCcEEEEECCCC--EEEEeccCCCCCCCCCc
Confidence 7999999999999887765554 35689999999999999998644 35789999999984 59988753 2248899
Q ss_pred cccEEEEECCcEEEEEccCCCC------CCCCcEEEEecCCCCcEEEEecCCCCCCCcccceEEEEeCCcEEEEEcccCC
Q 003577 79 YGHVMDLVSQRYLVSVSGNDGK------RVLSDAWALDTAQKPYVWQRLNPEGDRPSARMYATASARSDGMFLLCGGRDA 152 (810)
Q Consensus 79 ~~Hs~~~v~~~~l~VfGG~~g~------~~~ndv~~yd~~~~~~~W~~i~~~g~~P~~R~~hsa~~~~~~~l~v~GG~~~ 152 (810)
.+|++++++++ ||||||.+.. ..++++++||++++ +|++++..+..|.+|.+|+++++.+ ++||+||...
T Consensus 129 ~~~~~~~~~~~-iyv~GG~~~~~~~~~~~~~~~v~~yd~~~~--~W~~l~~~~~~~~~r~~~~~~~~~~-~iyv~GG~~~ 204 (341)
T PLN02153 129 TFHSMASDENH-VYVFGGVSKGGLMKTPERFRTIEAYNIADG--KWVQLPDPGENFEKRGGAGFAVVQG-KIWVVYGFAT 204 (341)
T ss_pred eeeEEEEECCE-EEEECCccCCCccCCCcccceEEEEECCCC--eEeeCCCCCCCCCCCCcceEEEECC-eEEEEecccc
Confidence 99999888765 9999998643 24679999999999 9999987777778999999887755 5888887642
Q ss_pred C-------CCccccEEEEEeCCCCeEEEEeCCCCCCCcccceEEEEECCEEEEEcccCCCC-----CCCCCCceEEEEEC
Q 003577 153 S-------GAPLADAYGLLMHRNGQWEWTLAPGVAPSPRYQHAAVFVGARLHVTGGALRGG-----RAIEGEAAVAVLDT 220 (810)
Q Consensus 153 ~-------g~~l~d~~~l~~~~~~~W~~~~~~g~~P~~R~~hsav~~~~~l~V~GG~~~~~-----~~~~~~~~l~~yD~ 220 (810)
. ...+++++.|+.. +.+|+.+...+..|.+|..|++++++++||||||..... ......+++|+||+
T Consensus 205 ~~~~gG~~~~~~~~v~~yd~~-~~~W~~~~~~g~~P~~r~~~~~~~~~~~iyv~GG~~~~~~~~~~~~~~~~n~v~~~d~ 283 (341)
T PLN02153 205 SILPGGKSDYESNAVQFFDPA-SGKWTEVETTGAKPSARSVFAHAVVGKYIIIFGGEVWPDLKGHLGPGTLSNEGYALDT 283 (341)
T ss_pred ccccCCccceecCceEEEEcC-CCcEEeccccCCCCCCcceeeeEEECCEEEEECcccCCccccccccccccccEEEEEc
Confidence 1 1235778888776 458998887777899999999999999999999974321 01112568999999
Q ss_pred CCCcEEEcccCccCCCCCCCCCCCCCCCCCCcceeeEEEEe-C-CEEEEEcCCCCC-CCCCcEEEEeCCC
Q 003577 221 AAGVWLDRNGLVTSSRTSKGHGEHDPSLELMRRCRHASASI-G-VRIYIYGGLKGD-ILLDDFLVAENSP 287 (810)
Q Consensus 221 ~t~~W~~v~~~~~~~~~~~~~~~~~~~~~p~~R~~hs~~~~-~-~~i~I~GG~~~~-~~~~Dl~~ld~~~ 287 (810)
++++|+.+..... ...|..|++|+++.+ + ++||||||.++. ..++|+|+++...
T Consensus 284 ~~~~W~~~~~~~~-------------~~~pr~~~~~~~~~v~~~~~~~~~gG~~~~~~~~~~~~~~~~~~ 340 (341)
T PLN02153 284 ETLVWEKLGECGE-------------PAMPRGWTAYTTATVYGKNGLLMHGGKLPTNERTDDLYFYAVNS 340 (341)
T ss_pred CccEEEeccCCCC-------------CCCCCccccccccccCCcceEEEEcCcCCCCccccceEEEeccc
Confidence 9999998864310 012344544444444 3 589999998764 7889999998653
No 27
>KOG1230 consensus Protein containing repeated kelch motifs [General function prediction only]
Probab=99.97 E-value=5.1e-31 Score=275.44 Aligned_cols=221 Identities=26% Similarity=0.472 Sum_probs=183.6
Q ss_pred eEEEecCCCcEEEecCCCCCCccccccEEEEEC-CEEEEECccC--CCC---CccCcEEEEEccCCceEEEEEeecCCCC
Q 003577 2 MFSLENGPAGVCRIRPAGEPPSPRAAHAAAAVG-TMVVFQGGIG--PAG---HSTDDLYVLDLTNDKFKWHRVVVQGQGP 75 (810)
Q Consensus 2 l~~~~~~t~~W~~l~~~g~~P~~R~~haa~~~~-~~lyv~GG~~--~~~---~~~~dl~~lDl~t~~~~W~~v~~~g~~P 75 (810)
||.|++..++|+++. ..++|+||++|+++++. +.+++|||.- +.. ....|+|.||+.+ .+|.++...| .|
T Consensus 100 Ly~Yn~k~~eWkk~~-spn~P~pRsshq~va~~s~~l~~fGGEfaSPnq~qF~HYkD~W~fd~~t--rkweql~~~g-~P 175 (521)
T KOG1230|consen 100 LYSYNTKKNEWKKVV-SPNAPPPRSSHQAVAVPSNILWLFGGEFASPNQEQFHHYKDLWLFDLKT--RKWEQLEFGG-GP 175 (521)
T ss_pred eeEEeccccceeEec-cCCCcCCCccceeEEeccCeEEEeccccCCcchhhhhhhhheeeeeecc--chheeeccCC-CC
Confidence 799999999999996 44588899999999996 8999999975 221 3468999999999 4599998766 89
Q ss_pred CcccccEEEEECCcEEEEEccCCC----CCCCCcEEEEecCCCCcEEEEecCCCCCCCcccceEEEEeCCcEEEEEcccC
Q 003577 76 GPRYGHVMDLVSQRYLVSVSGNDG----KRVLSDAWALDTAQKPYVWQRLNPEGDRPSARMYATASARSDGMFLLCGGRD 151 (810)
Q Consensus 76 ~~R~~Hs~~~v~~~~l~VfGG~~g----~~~~ndv~~yd~~~~~~~W~~i~~~g~~P~~R~~hsa~~~~~~~l~v~GG~~ 151 (810)
+||+||-|++..+ .|++|||... ..++||||+||+ .+|+|+++.+.+..|.||++|++.+...+.|||+||++
T Consensus 176 S~RSGHRMvawK~-~lilFGGFhd~nr~y~YyNDvy~FdL--dtykW~Klepsga~PtpRSGcq~~vtpqg~i~vyGGYs 252 (521)
T KOG1230|consen 176 SPRSGHRMVAWKR-QLILFGGFHDSNRDYIYYNDVYAFDL--DTYKWSKLEPSGAGPTPRSGCQFSVTPQGGIVVYGGYS 252 (521)
T ss_pred CCCccceeEEeee-eEEEEcceecCCCceEEeeeeEEEec--cceeeeeccCCCCCCCCCCcceEEecCCCcEEEEcchh
Confidence 9999999988876 5999999743 237999999999 55699999999999999999999999787799999997
Q ss_pred CC--------CCccccEEEEEeCC--CCeEEE--EeCCCCCCCcccceEEEEEC-CEEEEEcccCCCCC-----CCCCCc
Q 003577 152 AS--------GAPLADAYGLLMHR--NGQWEW--TLAPGVAPSPRYQHAAVFVG-ARLHVTGGALRGGR-----AIEGEA 213 (810)
Q Consensus 152 ~~--------g~~l~d~~~l~~~~--~~~W~~--~~~~g~~P~~R~~hsav~~~-~~l~V~GG~~~~~~-----~~~~~~ 213 (810)
.. |...+|+|.|.... ..+|.| +.+.|..|.||.+.++++.. ++-+.|||..+... .....|
T Consensus 253 K~~~kK~~dKG~~hsDmf~L~p~~~~~dKw~W~kvkp~g~kPspRsgfsv~va~n~kal~FGGV~D~eeeeEsl~g~F~N 332 (521)
T KOG1230|consen 253 KQRVKKDVDKGTRHSDMFLLKPEDGREDKWVWTKVKPSGVKPSPRSGFSVAVAKNHKALFFGGVCDLEEEEESLSGEFFN 332 (521)
T ss_pred HhhhhhhhhcCceeeeeeeecCCcCCCcceeEeeccCCCCCCCCCCceeEEEecCCceEEecceecccccchhhhhhhhh
Confidence 43 78999999998865 224555 45668999999999998875 59999999976221 122279
Q ss_pred eEEEEECCCCcEEEcc
Q 003577 214 AVAVLDTAAGVWLDRN 229 (810)
Q Consensus 214 ~l~~yD~~t~~W~~v~ 229 (810)
|+|.||+..++|....
T Consensus 333 DLy~fdlt~nrW~~~q 348 (521)
T KOG1230|consen 333 DLYFFDLTRNRWSEGQ 348 (521)
T ss_pred hhhheecccchhhHhh
Confidence 9999999999998654
No 28
>cd00144 MPP_PPP_family phosphoprotein phosphatases of the metallophosphatase superfamily, metallophosphatase domain. The PPP (phosphoprotein phosphatase) family is one of two known protein phosphatase families specific for serine and threonine. This family includes: PP1, PP2A, PP2B (calcineurin), PP4, PP5, PP6, PP7, Bsu1, RdgC, PrpE, PrpA/PrpB, and ApA4 hydrolase. The PPP catalytic domain is defined by three conserved motifs (-GDXHG-, -GDXVDRG- and -GNHE-). The PPP enzyme family is ancient with members found in all eukaryotes, and in most bacterial and archeal genomes. Dephosphorylation of phosphoserines and phosphothreonines on target proteins plays a central role in the regulation of many cellular processes. PPPs belong to the metallophosphatase (MPP) superfamily. MPPs are functionally diverse, but all share a conserved domain with an active site consisting of two metal ions (usually manganese, iron, or zinc) coordinated with octahedral geometry by a cage of histidine, aspartate
Probab=99.97 E-value=4.6e-31 Score=274.12 Aligned_cols=218 Identities=49% Similarity=0.781 Sum_probs=174.1
Q ss_pred EEEecCCCCHHHHHHHHHHhCCCCCCCCcceeeEEEeccccCCCCChHHHHHHHHHHhhcCCCcEEEecCCccccchhhc
Q 003577 509 KVFGDLHGQFGDLMRLFDEYGFPSTAGDITYIDYLFLGDYVDRGQHSLETITLLLALKIEYPENVHLIRGNHEAADINAL 588 (810)
Q Consensus 509 ~vvGDiHG~~~~L~~~l~~~~~~~~~~~~~~~~~vfLGDyVDRG~~s~evl~ll~~lk~~~p~~v~llrGNHE~~~~~~~ 588 (810)
+|||||||++.+|.++|+..+..+.+ .+||||||||||+.+.||+.+++.++.. |.++++||||||.+.++..
T Consensus 1 ~~igDiHg~~~~l~~~l~~~~~~~~d------~li~lGD~vdrg~~~~~~l~~l~~~~~~-~~~~~~l~GNHe~~~~~~~ 73 (225)
T cd00144 1 YVIGDIHGCLDDLLRLLEKIGFPPND------KLIFLGDYVDRGPDSVEVIDLLLALKIL-PDNVILLRGNHEDMLLNFL 73 (225)
T ss_pred CEEeCCCCCHHHHHHHHHHhCCCCCC------EEEEECCEeCCCCCcHHHHHHHHHhcCC-CCcEEEEccCchhhhhhhh
Confidence 58999999999999999999886544 8999999999999999999999999887 8899999999999998887
Q ss_pred cCChHHHH-----HhhCCCCccccccccccccccCceeEEEcC-cEEEecCCcCCcccchhhhhcccCCcccCCCchhhh
Q 003577 589 FGFRLECI-----ERMGENDGIWAWTRFNQLFNCLPLAALIEK-KIICMHGGIGRSIHSVEQIEKLERPITMDAGSIILM 662 (810)
Q Consensus 589 ~gf~~e~~-----~~~~~~~~~~~~~~~~~~f~~lPla~~i~~-~il~vHgGi~~~~~~~~~i~~~~rp~~~~~~~~~~~ 662 (810)
+++..+.. ...........+..+.++|..||+++.++. +++|||||+.|.....+++.. .+ ..+...
T Consensus 74 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lp~~~~~~~~~~~~vHag~~~~~~~~~~~~~------~~-~~~~~~ 146 (225)
T cd00144 74 YGFYDEDEWIGGTLRLLKKLGEDLWEEFNDVFFYLPLAALIETKKVLCVHGGLSPGLPLEEQIKE------EP-EDQLPE 146 (225)
T ss_pred cCCcchhhccchhHHHHHhhCHHHHHHHHHHHHhCcHheEeCCCeEEEEeCCCCCccchHHhhhc------Cc-ccccce
Confidence 77654421 011111233466778899999999999986 999999999998765555441 11 123678
Q ss_pred hhccCCCCCCCCCCCCCcCCCCCceeeeCHHHHHHHHHhcCCcEEEEeccccccceEEecCCeEEEEEccCCCCCCCCCe
Q 003577 663 DLLWSDPTENDSIEGLRPNARGPGLVTFGPDRVSDFCKRNKLQLIIRAHECVMDGFERFAQGQLITLFSATNYCGTANNA 742 (810)
Q Consensus 663 dllWsdP~~~~~~~~~~~~~rg~~~~~fg~~~~~~fl~~~~l~~iiR~H~~~~~G~~~~~~~~~itvfSa~~y~~~~~n~ 742 (810)
+++|++|.... .....+.|+. |+++.+.|++.++.+.|||||+++.+|+.....++++||+|++.|++..+|.
T Consensus 147 ~~lw~r~~~~~--~~~~~~~~~~-----~~~~~~~~~~~~~~~~ii~GHt~~~~~~~~~~~~~~i~IDtg~~~~~~~~~~ 219 (225)
T cd00144 147 DLLWSDPLELP--GGFGSSRRGG-----GPDAVEWFLKKNGLKLIVRGHTPVEEGYEFGHDGNLITIDSGCNYCGGGGNK 219 (225)
T ss_pred eeeecCCCCCC--CCCcCCCCCC-----CHHHHHHHHHHCCCeEEEEcCccccCccEEcCCCCEEEEecCCcccCCCCcc
Confidence 89999997532 2222334433 8999999999999999999999999998777889999999999999877777
Q ss_pred EEEEE
Q 003577 743 GAILV 747 (810)
Q Consensus 743 ga~l~ 747 (810)
.+++.
T Consensus 220 l~~~~ 224 (225)
T cd00144 220 LAALV 224 (225)
T ss_pred EEEEe
Confidence 77654
No 29
>PHA02713 hypothetical protein; Provisional
Probab=99.97 E-value=1.8e-29 Score=294.15 Aligned_cols=251 Identities=12% Similarity=0.070 Sum_probs=208.1
Q ss_pred eEEEecCCCcEEEecCCCCCCccccccEEEEECCEEEEECccCCCCCccCcEEEEEccCCceEEEEEeecCCCCCccccc
Q 003577 2 MFSLENGPAGVCRIRPAGEPPSPRAAHAAAAVGTMVVFQGGIGPAGHSTDDLYVLDLTNDKFKWHRVVVQGQGPGPRYGH 81 (810)
Q Consensus 2 l~~~~~~t~~W~~l~~~g~~P~~R~~haa~~~~~~lyv~GG~~~~~~~~~dl~~lDl~t~~~~W~~v~~~g~~P~~R~~H 81 (810)
++.||+.+++|..+.+ +|.+|.+|+++++++.||++||........+++|+||+.+++ |..+++ +|.+|.+|
T Consensus 274 v~~yd~~~~~W~~l~~---mp~~r~~~~~a~l~~~IYviGG~~~~~~~~~~v~~Yd~~~n~--W~~~~~---m~~~R~~~ 345 (557)
T PHA02713 274 ILVYNINTMEYSVIST---IPNHIINYASAIVDNEIIIAGGYNFNNPSLNKVYKINIENKI--HVELPP---MIKNRCRF 345 (557)
T ss_pred EEEEeCCCCeEEECCC---CCccccceEEEEECCEEEEEcCCCCCCCccceEEEEECCCCe--EeeCCC---Ccchhhce
Confidence 5889999999999864 667899999999999999999986444467899999999955 988875 78999999
Q ss_pred EEEEECCcEEEEEccCCCCCCCCcEEEEecCCCCcEEEEecCCCCCCCcccceEEEEeCCcEEEEEcccCCCC-------
Q 003577 82 VMDLVSQRYLVSVSGNDGKRVLSDAWALDTAQKPYVWQRLNPEGDRPSARMYATASARSDGMFLLCGGRDASG------- 154 (810)
Q Consensus 82 s~~~v~~~~l~VfGG~~g~~~~ndv~~yd~~~~~~~W~~i~~~g~~P~~R~~hsa~~~~~~~l~v~GG~~~~g------- 154 (810)
+++++++. ||++||.++...++++++||+.++ +|+.+++ +|.+|.+|++++.+ ++||++||.+...
T Consensus 346 ~~~~~~g~-IYviGG~~~~~~~~sve~Ydp~~~--~W~~~~~---mp~~r~~~~~~~~~-g~IYviGG~~~~~~~~~~~~ 418 (557)
T PHA02713 346 SLAVIDDT-IYAIGGQNGTNVERTIECYTMGDD--KWKMLPD---MPIALSSYGMCVLD-QYIYIIGGRTEHIDYTSVHH 418 (557)
T ss_pred eEEEECCE-EEEECCcCCCCCCceEEEEECCCC--eEEECCC---CCcccccccEEEEC-CEEEEEeCCCcccccccccc
Confidence 99999875 999999988778899999999999 9999876 88999999888764 6699999986431
Q ss_pred ----------CccccEEEEEeCCCCeEEEEeCCCCCCCcccceEEEEECCEEEEEcccCCCCCCCCCCceEEEEECCC-C
Q 003577 155 ----------APLADAYGLLMHRNGQWEWTLAPGVAPSPRYQHAAVFVGARLHVTGGALRGGRAIEGEAAVAVLDTAA-G 223 (810)
Q Consensus 155 ----------~~l~d~~~l~~~~~~~W~~~~~~g~~P~~R~~hsav~~~~~l~V~GG~~~~~~~~~~~~~l~~yD~~t-~ 223 (810)
..++.++.|+.. +.+|+.+.+ .|.+|..|++++++++|||+||..+... ..+.+++||+++ +
T Consensus 419 ~~~~~~~~~~~~~~~ve~YDP~-td~W~~v~~---m~~~r~~~~~~~~~~~IYv~GG~~~~~~---~~~~ve~Ydp~~~~ 491 (557)
T PHA02713 419 MNSIDMEEDTHSSNKVIRYDTV-NNIWETLPN---FWTGTIRPGVVSHKDDIYVVCDIKDEKN---VKTCIFRYNTNTYN 491 (557)
T ss_pred cccccccccccccceEEEECCC-CCeEeecCC---CCcccccCcEEEECCEEEEEeCCCCCCc---cceeEEEecCCCCC
Confidence 124566666665 558886643 4778999999999999999999864321 134589999999 8
Q ss_pred cEEEcccCccCCCCCCCCCCCCCCCCCCcceeeEEEEeCCEEEEEcCCCCCCCCCcEEEEeCCCCcccCCCC
Q 003577 224 VWLDRNGLVTSSRTSKGHGEHDPSLELMRRCRHASASIGVRIYIYGGLKGDILLDDFLVAENSPFQSDVNSP 295 (810)
Q Consensus 224 ~W~~v~~~~~~~~~~~~~~~~~~~~~p~~R~~hs~~~~~~~i~I~GG~~~~~~~~Dl~~ld~~~~~~~~~~~ 295 (810)
+|+.++.+ |.+|..+++++++++||++||+++. .++.+||+.+-+|+...+
T Consensus 492 ~W~~~~~m------------------~~~r~~~~~~~~~~~iyv~Gg~~~~---~~~e~yd~~~~~W~~~~~ 542 (557)
T PHA02713 492 GWELITTT------------------ESRLSALHTILHDNTIMMLHCYESY---MLQDTFNVYTYEWNHICH 542 (557)
T ss_pred CeeEcccc------------------CcccccceeEEECCEEEEEeeecce---eehhhcCcccccccchhh
Confidence 99999887 6699999999999999999999873 467899999999985433
No 30
>KOG4441 consensus Proteins containing BTB/POZ and Kelch domains, involved in regulatory/signal transduction processes [Signal transduction mechanisms; General function prediction only]
Probab=99.97 E-value=8.6e-29 Score=287.37 Aligned_cols=254 Identities=17% Similarity=0.249 Sum_probs=223.2
Q ss_pred CeEEEecCCCcEEEecCCCCCCccccccEEEEECCEEEEECccCCCCCccCcEEEEEccCCceEEEEEeecCCCCCcccc
Q 003577 1 MMFSLENGPAGVCRIRPAGEPPSPRAAHAAAAVGTMVVFQGGIGPAGHSTDDLYVLDLTNDKFKWHRVVVQGQGPGPRYG 80 (810)
Q Consensus 1 ~l~~~~~~t~~W~~l~~~g~~P~~R~~haa~~~~~~lyv~GG~~~~~~~~~dl~~lDl~t~~~~W~~v~~~g~~P~~R~~ 80 (810)
++..||+.++.|..+.+ +|.+|..++++++++.||+.||.+.+...++++|+||+.+++ |+.+++ ++.+|.+
T Consensus 302 ~ve~yd~~~~~w~~~a~---m~~~r~~~~~~~~~~~lYv~GG~~~~~~~l~~ve~YD~~~~~--W~~~a~---M~~~R~~ 373 (571)
T KOG4441|consen 302 SVECYDPKTNEWSSLAP---MPSPRCRVGVAVLNGKLYVVGGYDSGSDRLSSVERYDPRTNQ--WTPVAP---MNTKRSD 373 (571)
T ss_pred eeEEecCCcCcEeecCC---CCcccccccEEEECCEEEEEccccCCCcccceEEEecCCCCc--eeccCC---ccCcccc
Confidence 35689999999999875 668999999999999999999998545688999999999966 999876 8999999
Q ss_pred cEEEEECCcEEEEEccCCCCCCCCcEEEEecCCCCcEEEEecCCCCCCCcccceEEEEeCCcEEEEEcccCCCCCccccE
Q 003577 81 HVMDLVSQRYLVSVSGNDGKRVLSDAWALDTAQKPYVWQRLNPEGDRPSARMYATASARSDGMFLLCGGRDASGAPLADA 160 (810)
Q Consensus 81 Hs~~~v~~~~l~VfGG~~g~~~~ndv~~yd~~~~~~~W~~i~~~g~~P~~R~~hsa~~~~~~~l~v~GG~~~~g~~l~d~ 160 (810)
|+++++++. +|+.||.++...++++.+||+.++ +|+.+.+ ++.+|++|++++. ++++|+.||++.....++.+
T Consensus 374 ~~v~~l~g~-iYavGG~dg~~~l~svE~YDp~~~--~W~~va~---m~~~r~~~gv~~~-~g~iYi~GG~~~~~~~l~sv 446 (571)
T KOG4441|consen 374 FGVAVLDGK-LYAVGGFDGEKSLNSVECYDPVTN--KWTPVAP---MLTRRSGHGVAVL-GGKLYIIGGGDGSSNCLNSV 446 (571)
T ss_pred ceeEEECCE-EEEEeccccccccccEEEecCCCC--cccccCC---CCcceeeeEEEEE-CCEEEEEcCcCCCccccceE
Confidence 999999875 999999999999999999999999 9998876 7778988888866 46699999999886678888
Q ss_pred EEEEeCCCCeEEEEeCCCCCCCcccceEEEEECCEEEEEcccCCCCCCCCCCceEEEEECCCCcEEEcccCccCCCCCCC
Q 003577 161 YGLLMHRNGQWEWTLAPGVAPSPRYQHAAVFVGARLHVTGGALRGGRAIEGEAAVAVLDTAAGVWLDRNGLVTSSRTSKG 240 (810)
Q Consensus 161 ~~l~~~~~~~W~~~~~~g~~P~~R~~hsav~~~~~l~V~GG~~~~~~~~~~~~~l~~yD~~t~~W~~v~~~~~~~~~~~~ 240 (810)
..++..+ ++|+...+. +.+|.+|++++++++||++||..+.. ....+++||+++++|..+..+
T Consensus 447 e~YDP~t-~~W~~~~~M---~~~R~~~g~a~~~~~iYvvGG~~~~~----~~~~VE~ydp~~~~W~~v~~m--------- 509 (571)
T KOG4441|consen 447 ECYDPET-NTWTLIAPM---NTRRSGFGVAVLNGKIYVVGGFDGTS----ALSSVERYDPETNQWTMVAPM--------- 509 (571)
T ss_pred EEEcCCC-CceeecCCc---ccccccceEEEECCEEEEECCccCCC----ccceEEEEcCCCCceeEcccC---------
Confidence 8888764 488877654 67999999999999999999998722 234499999999999999777
Q ss_pred CCCCCCCCCCCcceeeEEEEeCCEEEEEcCCCCCCCCCcEEEEeCCCCcccCCCC
Q 003577 241 HGEHDPSLELMRRCRHASASIGVRIYIYGGLKGDILLDDFLVAENSPFQSDVNSP 295 (810)
Q Consensus 241 ~~~~~~~~~p~~R~~hs~~~~~~~i~I~GG~~~~~~~~Dl~~ld~~~~~~~~~~~ 295 (810)
..+|..++++++++++|+.||+++...++.+.+||.++-+|....+
T Consensus 510 ---------~~~rs~~g~~~~~~~ly~vGG~~~~~~l~~ve~ydp~~d~W~~~~~ 555 (571)
T KOG4441|consen 510 ---------TSPRSAVGVVVLGGKLYAVGGFDGNNNLNTVECYDPETDTWTEVTE 555 (571)
T ss_pred ---------ccccccccEEEECCEEEEEecccCccccceeEEcCCCCCceeeCCC
Confidence 4589999999999999999999999999999999999999998776
No 31
>KOG0379 consensus Kelch repeat-containing proteins [General function prediction only]
Probab=99.96 E-value=1.2e-28 Score=281.78 Aligned_cols=261 Identities=26% Similarity=0.382 Sum_probs=215.9
Q ss_pred eEEEecCCCcEEEecCCCCCCccccccEEEEECCEEEEECccCCCCCccCcEEEEEccCCceEEEEEeecCCCCCccccc
Q 003577 2 MFSLENGPAGVCRIRPAGEPPSPRAAHAAAAVGTMVVFQGGIGPAGHSTDDLYVLDLTNDKFKWHRVVVQGQGPGPRYGH 81 (810)
Q Consensus 2 l~~~~~~t~~W~~l~~~g~~P~~R~~haa~~~~~~lyv~GG~~~~~~~~~dl~~lDl~t~~~~W~~v~~~g~~P~~R~~H 81 (810)
+|.+|+.+..|.+..+.+..|++|.+|++++++++||+|||........+++|.||+.+ .+|..+.+.+.+|++|.+|
T Consensus 90 l~~~d~~~~~w~~~~~~g~~p~~r~g~~~~~~~~~l~lfGG~~~~~~~~~~l~~~d~~t--~~W~~l~~~~~~P~~r~~H 167 (482)
T KOG0379|consen 90 LYVLDLESQLWTKPAATGDEPSPRYGHSLSAVGDKLYLFGGTDKKYRNLNELHSLDLST--RTWSLLSPTGDPPPPRAGH 167 (482)
T ss_pred eEEeecCCcccccccccCCCCCcccceeEEEECCeEEEEccccCCCCChhheEeccCCC--CcEEEecCcCCCCCCcccc
Confidence 79999999999999999999999999999999999999999986555689999999999 5599999999999999999
Q ss_pred EEEEECCcEEEEEccCCCCC-CCCcEEEEecCCCCcEEEEecCCCCCCCcccceEEEEeCCcEEEEEcccCCCCCccccE
Q 003577 82 VMDLVSQRYLVSVSGNDGKR-VLSDAWALDTAQKPYVWQRLNPEGDRPSARMYATASARSDGMFLLCGGRDASGAPLADA 160 (810)
Q Consensus 82 s~~~v~~~~l~VfGG~~g~~-~~ndv~~yd~~~~~~~W~~i~~~g~~P~~R~~hsa~~~~~~~l~v~GG~~~~g~~l~d~ 160 (810)
+++++++ ++|||||.+... .+||+|+||+++. +|.++...+..|.||.+|+++++++.. +|+||.+.....++|+
T Consensus 168 s~~~~g~-~l~vfGG~~~~~~~~ndl~i~d~~~~--~W~~~~~~g~~P~pR~gH~~~~~~~~~-~v~gG~~~~~~~l~D~ 243 (482)
T KOG0379|consen 168 SATVVGT-KLVVFGGIGGTGDSLNDLHIYDLETS--TWSELDTQGEAPSPRYGHAMVVVGNKL-LVFGGGDDGDVYLNDV 243 (482)
T ss_pred eEEEECC-EEEEECCccCcccceeeeeeeccccc--cceecccCCCCCCCCCCceEEEECCeE-EEEeccccCCceecce
Confidence 9999995 699999998877 8999999999888 899999999999999999999998884 5555555555889999
Q ss_pred EEEEeCCCCeEEEEeCCCCCCCcccceEEEEECCEEEEEcccCCCCCCCCCCceEEEEECCCCcEEEcccCccCCCCCCC
Q 003577 161 YGLLMHRNGQWEWTLAPGVAPSPRYQHAAVFVGARLHVTGGALRGGRAIEGEAAVAVLDTAAGVWLDRNGLVTSSRTSKG 240 (810)
Q Consensus 161 ~~l~~~~~~~W~~~~~~g~~P~~R~~hsav~~~~~l~V~GG~~~~~~~~~~~~~l~~yD~~t~~W~~v~~~~~~~~~~~~ 240 (810)
|.++..+ .+|......+..|.+|+.|+++..+.+++|+||..... .....++|.||+++..|..+....
T Consensus 244 ~~ldl~~-~~W~~~~~~g~~p~~R~~h~~~~~~~~~~l~gG~~~~~--~~~l~~~~~l~~~~~~w~~~~~~~-------- 312 (482)
T KOG0379|consen 244 HILDLST-WEWKLLPTGGDLPSPRSGHSLTVSGDHLLLFGGGTDPK--QEPLGDLYGLDLETLVWSKVESVG-------- 312 (482)
T ss_pred Eeeeccc-ceeeeccccCCCCCCcceeeeEEECCEEEEEcCCcccc--cccccccccccccccceeeeeccc--------
Confidence 9999984 46665556699999999999999999999999997641 123667999999999999988762
Q ss_pred CCCCCCCCCCCcceeeEEEEeCC----EEEEEcCCCC-CCCCCcEEEEeC
Q 003577 241 HGEHDPSLELMRRCRHASASIGV----RIYIYGGLKG-DILLDDFLVAEN 285 (810)
Q Consensus 241 ~~~~~~~~~p~~R~~hs~~~~~~----~i~I~GG~~~-~~~~~Dl~~ld~ 285 (810)
...|.+|..|+.+.+.. ...++||... ....++++.+..
T Consensus 313 ------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 356 (482)
T KOG0379|consen 313 ------VVRPSPRLGHAAELIDELGKDGLGILGGNQILGERLADVFSLQI 356 (482)
T ss_pred ------cccccccccccceeeccCCccceeeecCccccccchhhcccccc
Confidence 13467888888887753 3444555222 133444444433
No 32
>KOG1230 consensus Protein containing repeated kelch motifs [General function prediction only]
Probab=99.96 E-value=6.1e-29 Score=259.93 Aligned_cols=253 Identities=21% Similarity=0.323 Sum_probs=208.6
Q ss_pred CCCCCccccccEEEEE--CCEEEEECccCCC---CCccCcEEEEEccCCceEEEEEeecCCCCCcccccEEEEECCcEEE
Q 003577 18 AGEPPSPRAAHAAAAV--GTMVVFQGGIGPA---GHSTDDLYVLDLTNDKFKWHRVVVQGQGPGPRYGHVMDLVSQRYLV 92 (810)
Q Consensus 18 ~g~~P~~R~~haa~~~--~~~lyv~GG~~~~---~~~~~dl~~lDl~t~~~~W~~v~~~g~~P~~R~~Hs~~~v~~~~l~ 92 (810)
.-.+|+||.+.+.++. .+-|++|||.--. ....||+|.||.++++ |+++... +.|+||++|.++++..+.++
T Consensus 60 ~~~~PspRsn~sl~~nPekeELilfGGEf~ngqkT~vYndLy~Yn~k~~e--Wkk~~sp-n~P~pRsshq~va~~s~~l~ 136 (521)
T KOG1230|consen 60 SVPPPSPRSNPSLFANPEKEELILFGGEFYNGQKTHVYNDLYSYNTKKNE--WKKVVSP-NAPPPRSSHQAVAVPSNILW 136 (521)
T ss_pred cCCCCCCCCCcceeeccCcceeEEecceeecceeEEEeeeeeEEeccccc--eeEeccC-CCcCCCccceeEEeccCeEE
Confidence 4458899998888877 3589999996422 2357999999999955 9998754 47899999999999877999
Q ss_pred EEccCCCC------CCCCcEEEEecCCCCcEEEEecCCCCCCCcccceEEEEeCCcEEEEEcccCCC---CCccccEEEE
Q 003577 93 SVSGNDGK------RVLSDAWALDTAQKPYVWQRLNPEGDRPSARMYATASARSDGMFLLCGGRDAS---GAPLADAYGL 163 (810)
Q Consensus 93 VfGG~~g~------~~~ndv~~yd~~~~~~~W~~i~~~g~~P~~R~~hsa~~~~~~~l~v~GG~~~~---g~~l~d~~~l 163 (810)
+|||.-.+ ..+.|+|.||+.++ +|+++...+ .|.||++|-+++..+. ++||||...+ ...+||+|.+
T Consensus 137 ~fGGEfaSPnq~qF~HYkD~W~fd~~tr--kweql~~~g-~PS~RSGHRMvawK~~-lilFGGFhd~nr~y~YyNDvy~F 212 (521)
T KOG1230|consen 137 LFGGEFASPNQEQFHHYKDLWLFDLKTR--KWEQLEFGG-GPSPRSGHRMVAWKRQ-LILFGGFHDSNRDYIYYNDVYAF 212 (521)
T ss_pred EeccccCCcchhhhhhhhheeeeeeccc--hheeeccCC-CCCCCccceeEEeeee-EEEEcceecCCCceEEeeeeEEE
Confidence 99996322 24789999999999 999998766 7999999999988755 8999998654 3578999999
Q ss_pred EeCCCCeEEEEeCCCCCCCcccceEEEEE-CCEEEEEcccCCCCC--C---CCCCceEEEEECCC-----CcEEEcccCc
Q 003577 164 LMHRNGQWEWTLAPGVAPSPRYQHAAVFV-GARLHVTGGALRGGR--A---IEGEAAVAVLDTAA-----GVWLDRNGLV 232 (810)
Q Consensus 164 ~~~~~~~W~~~~~~g~~P~~R~~hsav~~-~~~l~V~GG~~~~~~--~---~~~~~~l~~yD~~t-----~~W~~v~~~~ 232 (810)
++. +-+|+.+.++|..|.||++|++.+. .+.|||+||+..... . .-.++|+|.++++. ..|.++++.
T Consensus 213 dLd-tykW~Klepsga~PtpRSGcq~~vtpqg~i~vyGGYsK~~~kK~~dKG~~hsDmf~L~p~~~~~dKw~W~kvkp~- 290 (521)
T KOG1230|consen 213 DLD-TYKWSKLEPSGAGPTPRSGCQFSVTPQGGIVVYGGYSKQRVKKDVDKGTRHSDMFLLKPEDGREDKWVWTKVKPS- 290 (521)
T ss_pred ecc-ceeeeeccCCCCCCCCCCcceEEecCCCcEEEEcchhHhhhhhhhhcCceeeeeeeecCCcCCCcceeEeeccCC-
Confidence 986 5599999999989999999999888 899999999975321 0 11278999999998 689998877
Q ss_pred cCCCCCCCCCCCCCCCCCCcceeeEEEEeC-CEEEEEcCCCC---------CCCCCcEEEEeCCCCcccCC
Q 003577 233 TSSRTSKGHGEHDPSLELMRRCRHASASIG-VRIYIYGGLKG---------DILLDDFLVAENSPFQSDVN 293 (810)
Q Consensus 233 ~~~~~~~~~~~~~~~~~p~~R~~hs~~~~~-~~i~I~GG~~~---------~~~~~Dl~~ld~~~~~~~~~ 293 (810)
+..|.||.+.++++.. ++-+.|||... +.++||+|.||+..-.|...
T Consensus 291 --------------g~kPspRsgfsv~va~n~kal~FGGV~D~eeeeEsl~g~F~NDLy~fdlt~nrW~~~ 347 (521)
T KOG1230|consen 291 --------------GVKPSPRSGFSVAVAKNHKALFFGGVCDLEEEEESLSGEFFNDLYFFDLTRNRWSEG 347 (521)
T ss_pred --------------CCCCCCCCceeEEEecCCceEEecceecccccchhhhhhhhhhhhheecccchhhHh
Confidence 6789999999988885 69999999544 27899999999999888753
No 33
>PHA03098 kelch-like protein; Provisional
Probab=99.96 E-value=3.7e-28 Score=284.44 Aligned_cols=252 Identities=14% Similarity=0.218 Sum_probs=205.5
Q ss_pred EecCCCcEEEecCCCCCCccccccEEEEECCEEEEECccCCCCCccCcEEEEEccCCceEEEEEeecCCCCCcccccEEE
Q 003577 5 LENGPAGVCRIRPAGEPPSPRAAHAAAAVGTMVVFQGGIGPAGHSTDDLYVLDLTNDKFKWHRVVVQGQGPGPRYGHVMD 84 (810)
Q Consensus 5 ~~~~t~~W~~l~~~g~~P~~R~~haa~~~~~~lyv~GG~~~~~~~~~dl~~lDl~t~~~~W~~v~~~g~~P~~R~~Hs~~ 84 (810)
|+..+.+|..+. ..| .+..|+++++++.||++||........+++|+||+.++ +|..++. +|.+|.+|+++
T Consensus 269 ~~~~~~~~~~~~---~~~-~~~~~~~~~~~~~lyv~GG~~~~~~~~~~v~~yd~~~~--~W~~~~~---~~~~R~~~~~~ 339 (534)
T PHA03098 269 NYSPLSEINTII---DIH-YVYCFGSVVLNNVIYFIGGMNKNNLSVNSVVSYDTKTK--SWNKVPE---LIYPRKNPGVT 339 (534)
T ss_pred cchhhhhccccc---Ccc-ccccceEEEECCEEEEECCCcCCCCeeccEEEEeCCCC--eeeECCC---CCcccccceEE
Confidence 445556676653 223 24567899999999999999866667789999999995 5987764 78899999999
Q ss_pred EECCcEEEEEccCCCCCCCCcEEEEecCCCCcEEEEecCCCCCCCcccceEEEEeCCcEEEEEcccCCCCCccccEEEEE
Q 003577 85 LVSQRYLVSVSGNDGKRVLSDAWALDTAQKPYVWQRLNPEGDRPSARMYATASARSDGMFLLCGGRDASGAPLADAYGLL 164 (810)
Q Consensus 85 ~v~~~~l~VfGG~~g~~~~ndv~~yd~~~~~~~W~~i~~~g~~P~~R~~hsa~~~~~~~l~v~GG~~~~g~~l~d~~~l~ 164 (810)
++++ .+|++||.++...++++++||+.++ +|+.+.+ +|.+|.+|++++++ +.+|++||....+..+++++.++
T Consensus 340 ~~~~-~lyv~GG~~~~~~~~~v~~yd~~~~--~W~~~~~---lp~~r~~~~~~~~~-~~iYv~GG~~~~~~~~~~v~~yd 412 (534)
T PHA03098 340 VFNN-RIYVIGGIYNSISLNTVESWKPGES--KWREEPP---LIFPRYNPCVVNVN-NLIYVIGGISKNDELLKTVECFS 412 (534)
T ss_pred EECC-EEEEEeCCCCCEecceEEEEcCCCC--ceeeCCC---cCcCCccceEEEEC-CEEEEECCcCCCCcccceEEEEe
Confidence 8876 4999999987778899999999999 9998765 78899999987664 56999999876656678888887
Q ss_pred eCCCCeEEEEeCCCCCCCcccceEEEEECCEEEEEcccCCCCCCCCCCceEEEEECCCCcEEEcccCccCCCCCCCCCCC
Q 003577 165 MHRNGQWEWTLAPGVAPSPRYQHAAVFVGARLHVTGGALRGGRAIEGEAAVAVLDTAAGVWLDRNGLVTSSRTSKGHGEH 244 (810)
Q Consensus 165 ~~~~~~W~~~~~~g~~P~~R~~hsav~~~~~l~V~GG~~~~~~~~~~~~~l~~yD~~t~~W~~v~~~~~~~~~~~~~~~~ 244 (810)
.. +++|+... ..|.+|++|+++.++++|||+||...... ....+.+++||+++++|+.++..
T Consensus 413 ~~-t~~W~~~~---~~p~~r~~~~~~~~~~~iyv~GG~~~~~~-~~~~~~v~~yd~~~~~W~~~~~~------------- 474 (534)
T PHA03098 413 LN-TNKWSKGS---PLPISHYGGCAIYHDGKIYVIGGISYIDN-IKVYNIVESYNPVTNKWTELSSL------------- 474 (534)
T ss_pred CC-CCeeeecC---CCCccccCceEEEECCEEEEECCccCCCC-CcccceEEEecCCCCceeeCCCC-------------
Confidence 76 45887654 34789999999999999999999865432 12246699999999999998766
Q ss_pred CCCCCCCcceeeEEEEeCCEEEEEcCCCCCCCCCcEEEEeCCCCcccCCCC
Q 003577 245 DPSLELMRRCRHASASIGVRIYIYGGLKGDILLDDFLVAENSPFQSDVNSP 295 (810)
Q Consensus 245 ~~~~~p~~R~~hs~~~~~~~i~I~GG~~~~~~~~Dl~~ld~~~~~~~~~~~ 295 (810)
|.+|..|+++.++++|||+||.++....+++++||+++..|.....
T Consensus 475 -----~~~r~~~~~~~~~~~iyv~GG~~~~~~~~~v~~yd~~~~~W~~~~~ 520 (534)
T PHA03098 475 -----NFPRINASLCIFNNKIYVVGGDKYEYYINEIEVYDDKTNTWTLFCK 520 (534)
T ss_pred -----CcccccceEEEECCEEEEEcCCcCCcccceeEEEeCCCCEEEecCC
Confidence 4578889999999999999999887778999999999999986543
No 34
>TIGR03547 muta_rot_YjhT mutatrotase, YjhT family. Members of this protein family contain multiple copies of the beta-propeller-forming Kelch repeat. All are full-length homologs to YjhT of Escherichia coli, which has been identified as a mutarotase for sialic acid. This protein improves bacterial ability to obtain host sialic acid, and thus serves as a virulence factor. Some bacteria carry what appears to be a cyclically permuted homolog of this protein.
Probab=99.95 E-value=2.8e-26 Score=253.95 Aligned_cols=252 Identities=19% Similarity=0.233 Sum_probs=186.2
Q ss_pred eEEEec--CCCcEEEecCCCCCC-ccccccEEEEECCEEEEECccCCCC-----CccCcEEEEEccCCceEEEEEeecCC
Q 003577 2 MFSLEN--GPAGVCRIRPAGEPP-SPRAAHAAAAVGTMVVFQGGIGPAG-----HSTDDLYVLDLTNDKFKWHRVVVQGQ 73 (810)
Q Consensus 2 l~~~~~--~t~~W~~l~~~g~~P-~~R~~haa~~~~~~lyv~GG~~~~~-----~~~~dl~~lDl~t~~~~W~~v~~~g~ 73 (810)
+|.||+ .+++|+++.+ +| .+|..|+++++++.||++||..... ..++++|+||+.+++ |+.+.. .
T Consensus 31 ~~~~d~~~~~~~W~~l~~---~p~~~R~~~~~~~~~~~iYv~GG~~~~~~~~~~~~~~~v~~Yd~~~~~--W~~~~~--~ 103 (346)
T TIGR03547 31 WYKLDLKKPSKGWQKIAD---FPGGPRNQAVAAAIDGKLYVFGGIGKANSEGSPQVFDDVYRYDPKKNS--WQKLDT--R 103 (346)
T ss_pred eEEEECCCCCCCceECCC---CCCCCcccceEEEECCEEEEEeCCCCCCCCCcceecccEEEEECCCCE--EecCCC--C
Confidence 467775 5788999864 45 5899999999999999999986322 246899999999955 999863 3
Q ss_pred CCCcccccEEEEECCcEEEEEccCCCCC----------------------------------CCCcEEEEecCCCCcEEE
Q 003577 74 GPGPRYGHVMDLVSQRYLVSVSGNDGKR----------------------------------VLSDAWALDTAQKPYVWQ 119 (810)
Q Consensus 74 ~P~~R~~Hs~~~v~~~~l~VfGG~~g~~----------------------------------~~ndv~~yd~~~~~~~W~ 119 (810)
.|.+|.+|+++.+.++.||++||.++.. .++++++||+.++ +|+
T Consensus 104 ~p~~~~~~~~~~~~~g~IYviGG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~YDp~t~--~W~ 181 (346)
T TIGR03547 104 SPVGLLGASGFSLHNGQAYFTGGVNKNIFDGYFADLSAADKDSEPKDKLIAAYFSQPPEDYFWNKNVLSYDPSTN--QWR 181 (346)
T ss_pred CCCcccceeEEEEeCCEEEEEcCcChHHHHHHHhhHhhcCccchhhhhhHHHHhCCChhHcCccceEEEEECCCC--cee
Confidence 5778888988743345699999986421 2478999999999 999
Q ss_pred EecCCCCCCC-cccceEEEEeCCcEEEEEcccCCCCCccccEEEEEe-CCCCeEEEEeCCCCC----CCcccceEEEEEC
Q 003577 120 RLNPEGDRPS-ARMYATASARSDGMFLLCGGRDASGAPLADAYGLLM-HRNGQWEWTLAPGVA----PSPRYQHAAVFVG 193 (810)
Q Consensus 120 ~i~~~g~~P~-~R~~hsa~~~~~~~l~v~GG~~~~g~~l~d~~~l~~-~~~~~W~~~~~~g~~----P~~R~~hsav~~~ 193 (810)
.+.+ +|. +|..|++++. +++|||+||....+....+++.++. ..+.+|+.+.....+ +..|.+|+++.++
T Consensus 182 ~~~~---~p~~~r~~~~~~~~-~~~iyv~GG~~~~~~~~~~~~~y~~~~~~~~W~~~~~m~~~r~~~~~~~~~~~a~~~~ 257 (346)
T TIGR03547 182 NLGE---NPFLGTAGSAIVHK-GNKLLLINGEIKPGLRTAEVKQYLFTGGKLEWNKLPPLPPPKSSSQEGLAGAFAGISN 257 (346)
T ss_pred ECcc---CCCCcCCCceEEEE-CCEEEEEeeeeCCCccchheEEEEecCCCceeeecCCCCCCCCCccccccEEeeeEEC
Confidence 9865 664 6777777665 4569999998765444456666664 334578766543221 1234577788899
Q ss_pred CEEEEEcccCCCCCC-------------CCCCceEEEEECCCCcEEEcccCccCCCCCCCCCCCCCCCCCCcceeeEEEE
Q 003577 194 ARLHVTGGALRGGRA-------------IEGEAAVAVLDTAAGVWLDRNGLVTSSRTSKGHGEHDPSLELMRRCRHASAS 260 (810)
Q Consensus 194 ~~l~V~GG~~~~~~~-------------~~~~~~l~~yD~~t~~W~~v~~~~~~~~~~~~~~~~~~~~~p~~R~~hs~~~ 260 (810)
++|||+||....... ......+.+||+++++|+.+..+ |.+|..|++++
T Consensus 258 ~~Iyv~GG~~~~~~~~~~~~~~~~~~~~~~~~~~~e~yd~~~~~W~~~~~l------------------p~~~~~~~~~~ 319 (346)
T TIGR03547 258 GVLLVAGGANFPGAQENYKNGKLYAHEGLIKAWSSEVYALDNGKWSKVGKL------------------PQGLAYGVSVS 319 (346)
T ss_pred CEEEEeecCCCCCchhhhhcCCccccCCCCceeEeeEEEecCCcccccCCC------------------CCCceeeEEEE
Confidence 999999998532110 01124588999999999998876 56888899889
Q ss_pred eCCEEEEEcCCCCC-CCCCcEEEEe
Q 003577 261 IGVRIYIYGGLKGD-ILLDDFLVAE 284 (810)
Q Consensus 261 ~~~~i~I~GG~~~~-~~~~Dl~~ld 284 (810)
++++|||+||.+.. ..++|++.+-
T Consensus 320 ~~~~iyv~GG~~~~~~~~~~v~~~~ 344 (346)
T TIGR03547 320 WNNGVLLIGGENSGGKAVTDVYLLS 344 (346)
T ss_pred cCCEEEEEeccCCCCCEeeeEEEEE
Confidence 99999999998753 6788988764
No 35
>KOG4152 consensus Host cell transcription factor HCFC1 [Cell cycle control, cell division, chromosome partitioning; Transcription]
Probab=99.95 E-value=4.4e-27 Score=250.35 Aligned_cols=270 Identities=22% Similarity=0.354 Sum_probs=216.3
Q ss_pred CCcEEEec-CCCCCCccccccEEEEECCEEEEECccCCCCCccCcEEEEEccCCceEEEEEeecCCCCCcccccEEEEEC
Q 003577 9 PAGVCRIR-PAGEPPSPRAAHAAAAVGTMVVFQGGIGPAGHSTDDLYVLDLTNDKFKWHRVVVQGQGPGPRYGHVMDLVS 87 (810)
Q Consensus 9 t~~W~~l~-~~g~~P~~R~~haa~~~~~~lyv~GG~~~~~~~~~dl~~lDl~t~~~~W~~v~~~g~~P~~R~~Hs~~~v~ 87 (810)
--+|+++. ..|..|.||-+|.++++...|+||||-+.+ ..+++++|+..++ +|..-.+-|+.|++-..|..+..+
T Consensus 16 ~~rWrrV~~~tGPvPrpRHGHRAVaikELiviFGGGNEG--iiDELHvYNTatn--qWf~PavrGDiPpgcAA~GfvcdG 91 (830)
T KOG4152|consen 16 VVRWRRVQQSTGPVPRPRHGHRAVAIKELIVIFGGGNEG--IIDELHVYNTATN--QWFAPAVRGDIPPGCAAFGFVCDG 91 (830)
T ss_pred ccceEEEecccCCCCCccccchheeeeeeEEEecCCccc--chhhhhhhccccc--eeecchhcCCCCCchhhcceEecC
Confidence 45799886 356688999999999999999999997533 6789999999995 599888889999999989886666
Q ss_pred CcEEEEEccCCCC-CCCCcEEEEecCCCCcEEEEecC----CCCCCCcccceEEEEeCCcEEEEEcccCCC--------C
Q 003577 88 QRYLVSVSGNDGK-RVLSDAWALDTAQKPYVWQRLNP----EGDRPSARMYATASARSDGMFLLCGGRDAS--------G 154 (810)
Q Consensus 88 ~~~l~VfGG~~g~-~~~ndv~~yd~~~~~~~W~~i~~----~g~~P~~R~~hsa~~~~~~~l~v~GG~~~~--------g 154 (810)
. .||+|||.... ++.||+|.+ +...|.|+++.+ +|..|.||.+|+..++.++ -|+|||...+ -
T Consensus 92 t-rilvFGGMvEYGkYsNdLYEL--QasRWeWkrlkp~~p~nG~pPCPRlGHSFsl~gnK-cYlFGGLaNdseDpknNvP 167 (830)
T KOG4152|consen 92 T-RILVFGGMVEYGKYSNDLYEL--QASRWEWKRLKPKTPKNGPPPCPRLGHSFSLVGNK-CYLFGGLANDSEDPKNNVP 167 (830)
T ss_pred c-eEEEEccEeeeccccchHHHh--hhhhhhHhhcCCCCCCCCCCCCCccCceeEEeccE-eEEeccccccccCcccccc
Confidence 5 59999998544 478898654 667789999854 5778999999999988865 7999998654 2
Q ss_pred CccccEEEEEeCC-CC--eEEEEeCCCCCCCcccceEEEEE------CCEEEEEcccCCCCCCCCCCceEEEEECCCCcE
Q 003577 155 APLADAYGLLMHR-NG--QWEWTLAPGVAPSPRYQHAAVFV------GARLHVTGGALRGGRAIEGEAAVAVLDTAAGVW 225 (810)
Q Consensus 155 ~~l~d~~~l~~~~-~~--~W~~~~~~g~~P~~R~~hsav~~------~~~l~V~GG~~~~~~~~~~~~~l~~yD~~t~~W 225 (810)
..++|+|.+.+.. .+ -|+.....|..|.+|-.|+++.+ ..+|+||||..+-. +.|+|.+|++|.+|
T Consensus 168 rYLnDlY~leL~~Gsgvv~W~ip~t~Gv~P~pRESHTAViY~eKDs~~skmvvyGGM~G~R-----LgDLW~Ldl~Tl~W 242 (830)
T KOG4152|consen 168 RYLNDLYILELRPGSGVVAWDIPITYGVLPPPRESHTAVIYTEKDSKKSKMVVYGGMSGCR-----LGDLWTLDLDTLTW 242 (830)
T ss_pred hhhcceEEEEeccCCceEEEecccccCCCCCCcccceeEEEEeccCCcceEEEEccccccc-----ccceeEEecceeec
Confidence 4678999888752 22 58888888999999999999998 35899999997643 55699999999999
Q ss_pred EEcccCccCCCCCCCCCCCCCCCCCCcceeeEEEEeCCEEEEEcCCCCC--------------CCCCcEEEEeCCCCccc
Q 003577 226 LDRNGLVTSSRTSKGHGEHDPSLELMRRCRHASASIGVRIYIYGGLKGD--------------ILLDDFLVAENSPFQSD 291 (810)
Q Consensus 226 ~~v~~~~~~~~~~~~~~~~~~~~~p~~R~~hs~~~~~~~i~I~GG~~~~--------------~~~~Dl~~ld~~~~~~~ 291 (810)
.+.... +.+|.||.-|++..+|+++|||||+-.- .+++.+-++++++..|.
T Consensus 243 ~kp~~~---------------G~~PlPRSLHsa~~IGnKMyvfGGWVPl~~~~~~~~~hekEWkCTssl~clNldt~~W~ 307 (830)
T KOG4152|consen 243 NKPSLS---------------GVAPLPRSLHSATTIGNKMYVFGGWVPLVMDDVKVATHEKEWKCTSSLACLNLDTMAWE 307 (830)
T ss_pred cccccc---------------CCCCCCcccccceeecceeEEecceeeeeccccccccccceeeeccceeeeeecchhee
Confidence 997755 5678999999999999999999996431 45677778888887776
Q ss_pred CC-----CCCCCCCCCCCCc
Q 003577 292 VN-----SPLLTSERAPTHT 306 (810)
Q Consensus 292 ~~-----~~~~~~~~~~~~~ 306 (810)
.. .....|.++++|-
T Consensus 308 tl~~d~~ed~tiPR~RAGHC 327 (830)
T KOG4152|consen 308 TLLMDTLEDNTIPRARAGHC 327 (830)
T ss_pred eeeeccccccccccccccce
Confidence 22 2223566677764
No 36
>TIGR03548 mutarot_permut cyclically-permuted mutatrotase family protein. Members of this protein family show essentially full-length homology, cyclically permuted, to YjhT from Escherichia coli. YjhT was shown to act as a mutarotase for sialic acid, and by this ability to be able to act as a virulence factor. Members of the YjhT family (TIGR03547) and this cyclically-permuted family have multiple repeats of the beta-propeller-forming Kelch repeat.
Probab=99.95 E-value=7.5e-26 Score=248.00 Aligned_cols=239 Identities=16% Similarity=0.215 Sum_probs=177.7
Q ss_pred eEEEecC--CCcEEEecCCCCCCccccccEEEEECCEEEEECccCCCCCccCcEEEEEccCCceEEE-EEeecCCCCCcc
Q 003577 2 MFSLENG--PAGVCRIRPAGEPPSPRAAHAAAAVGTMVVFQGGIGPAGHSTDDLYVLDLTNDKFKWH-RVVVQGQGPGPR 78 (810)
Q Consensus 2 l~~~~~~--t~~W~~l~~~g~~P~~R~~haa~~~~~~lyv~GG~~~~~~~~~dl~~lDl~t~~~~W~-~v~~~g~~P~~R 78 (810)
+|.|+.. +.+|..+. .+|.+|..|+++++++.||++||.... ..++++|+||+.+++ |. +.....++|.+|
T Consensus 41 v~~~~~~~~~~~W~~~~---~lp~~r~~~~~~~~~~~lyviGG~~~~-~~~~~v~~~d~~~~~--w~~~~~~~~~lp~~~ 114 (323)
T TIGR03548 41 IYIAKDENSNLKWVKDG---QLPYEAAYGASVSVENGIYYIGGSNSS-ERFSSVYRITLDESK--EELICETIGNLPFTF 114 (323)
T ss_pred eEEEecCCCceeEEEcc---cCCccccceEEEEECCEEEEEcCCCCC-CCceeEEEEEEcCCc--eeeeeeEcCCCCcCc
Confidence 4555422 34687765 477899989999999999999998643 367899999999855 52 122234589999
Q ss_pred cccEEEEECCcEEEEEccCCCCCCCCcEEEEecCCCCcEEEEecCCCCCC-CcccceEEEEeCCcEEEEEcccCCCCCcc
Q 003577 79 YGHVMDLVSQRYLVSVSGNDGKRVLSDAWALDTAQKPYVWQRLNPEGDRP-SARMYATASARSDGMFLLCGGRDASGAPL 157 (810)
Q Consensus 79 ~~Hs~~~v~~~~l~VfGG~~g~~~~ndv~~yd~~~~~~~W~~i~~~g~~P-~~R~~hsa~~~~~~~l~v~GG~~~~g~~l 157 (810)
..|+++++++ .|||+||......++++|+||+.++ +|+++++ +| .+|..|++++.. ++|||+||.+.. ..
T Consensus 115 ~~~~~~~~~~-~iYv~GG~~~~~~~~~v~~yd~~~~--~W~~~~~---~p~~~r~~~~~~~~~-~~iYv~GG~~~~--~~ 185 (323)
T TIGR03548 115 ENGSACYKDG-TLYVGGGNRNGKPSNKSYLFNLETQ--EWFELPD---FPGEPRVQPVCVKLQ-NELYVFGGGSNI--AY 185 (323)
T ss_pred cCceEEEECC-EEEEEeCcCCCccCceEEEEcCCCC--CeeECCC---CCCCCCCcceEEEEC-CEEEEEcCCCCc--cc
Confidence 9999988876 5999999876667899999999998 9999865 44 368888776665 569999998653 35
Q ss_pred ccEEEEEeCCCCeEEEEeCCC--CCCCcccceEEEEE-CCEEEEEcccCCCCC---------------------------
Q 003577 158 ADAYGLLMHRNGQWEWTLAPG--VAPSPRYQHAAVFV-GARLHVTGGALRGGR--------------------------- 207 (810)
Q Consensus 158 ~d~~~l~~~~~~~W~~~~~~g--~~P~~R~~hsav~~-~~~l~V~GG~~~~~~--------------------------- 207 (810)
.|++.++.. +.+|+.+.... ..|..+.+++++.+ +++|||+||......
T Consensus 186 ~~~~~yd~~-~~~W~~~~~~~~~~~p~~~~~~~~~~~~~~~iyv~GG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 264 (323)
T TIGR03548 186 TDGYKYSPK-KNQWQKVADPTTDSEPISLLGAASIKINESLLLCIGGFNKDVYNDAVIDLATMKDESLKGYKKEYFLKPP 264 (323)
T ss_pred cceEEEecC-CCeeEECCCCCCCCCceeccceeEEEECCCEEEEECCcCHHHHHHHHhhhhhccchhhhhhHHHHhCCCc
Confidence 677877765 55898876543 23444555555544 789999999864210
Q ss_pred -CCCCCceEEEEECCCCcEEEcccCccCCCCCCCCCCCCCCCCCCcceeeEEEEeCCEEEEEcCCCC
Q 003577 208 -AIEGEAAVAVLDTAAGVWLDRNGLVTSSRTSKGHGEHDPSLELMRRCRHASASIGVRIYIYGGLKG 273 (810)
Q Consensus 208 -~~~~~~~l~~yD~~t~~W~~v~~~~~~~~~~~~~~~~~~~~~p~~R~~hs~~~~~~~i~I~GG~~~ 273 (810)
.....+++++||+.+++|+.++.. +..+|.+++++.++++||++||...
T Consensus 265 ~~~~~~~~v~~yd~~~~~W~~~~~~-----------------p~~~r~~~~~~~~~~~iyv~GG~~~ 314 (323)
T TIGR03548 265 EWYNWNRKILIYNVRTGKWKSIGNS-----------------PFFARCGAALLLTGNNIFSINGELK 314 (323)
T ss_pred cccCcCceEEEEECCCCeeeEcccc-----------------cccccCchheEEECCEEEEEecccc
Confidence 001135799999999999998755 1247999999999999999999644
No 37
>PRK14131 N-acetylneuraminic acid mutarotase; Provisional
Probab=99.95 E-value=8.6e-26 Score=252.38 Aligned_cols=253 Identities=18% Similarity=0.230 Sum_probs=186.6
Q ss_pred eEEEecC--CCcEEEecCCCCCCccccccEEEEECCEEEEECccCCC-----CCccCcEEEEEccCCceEEEEEeecCCC
Q 003577 2 MFSLENG--PAGVCRIRPAGEPPSPRAAHAAAAVGTMVVFQGGIGPA-----GHSTDDLYVLDLTNDKFKWHRVVVQGQG 74 (810)
Q Consensus 2 l~~~~~~--t~~W~~l~~~g~~P~~R~~haa~~~~~~lyv~GG~~~~-----~~~~~dl~~lDl~t~~~~W~~v~~~g~~ 74 (810)
+|.||.. +++|.++.+.. ..+|.+|+++.+++.||++||.... ...++++|+||+.+++ |++++. ..
T Consensus 52 ~~~~d~~~~~~~W~~l~~~p--~~~r~~~~~v~~~~~IYV~GG~~~~~~~~~~~~~~~v~~YD~~~n~--W~~~~~--~~ 125 (376)
T PRK14131 52 WYKLDLNAPSKGWTKIAAFP--GGPREQAVAAFIDGKLYVFGGIGKTNSEGSPQVFDDVYKYDPKTNS--WQKLDT--RS 125 (376)
T ss_pred EEEEECCCCCCCeEECCcCC--CCCcccceEEEECCEEEEEcCCCCCCCCCceeEcccEEEEeCCCCE--EEeCCC--CC
Confidence 4677775 57899886422 2589999999999999999998641 1246899999999854 999874 35
Q ss_pred CCcccccEEEEECCcEEEEEccCCCC----------------------------------CCCCcEEEEecCCCCcEEEE
Q 003577 75 PGPRYGHVMDLVSQRYLVSVSGNDGK----------------------------------RVLSDAWALDTAQKPYVWQR 120 (810)
Q Consensus 75 P~~R~~Hs~~~v~~~~l~VfGG~~g~----------------------------------~~~ndv~~yd~~~~~~~W~~ 120 (810)
|.+|++|+++++.++.|||+||.+.. ...+++++||+.++ +|+.
T Consensus 126 p~~~~~~~~~~~~~~~IYv~GG~~~~~~~~~~~d~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~v~~YD~~t~--~W~~ 203 (376)
T PRK14131 126 PVGLAGHVAVSLHNGKAYITGGVNKNIFDGYFEDLAAAGKDKTPKDKINDAYFDKKPEDYFFNKEVLSYDPSTN--QWKN 203 (376)
T ss_pred CCcccceEEEEeeCCEEEEECCCCHHHHHHHHhhhhhcccchhhhhhhHHHHhcCChhhcCcCceEEEEECCCC--eeeE
Confidence 77788999877445579999997532 12478999999999 9998
Q ss_pred ecCCCCCCC-cccceEEEEeCCcEEEEEcccCCCCCccccEEEEEe-CCCCeEEEEeCCCCCCCcc--------cceEEE
Q 003577 121 LNPEGDRPS-ARMYATASARSDGMFLLCGGRDASGAPLADAYGLLM-HRNGQWEWTLAPGVAPSPR--------YQHAAV 190 (810)
Q Consensus 121 i~~~g~~P~-~R~~hsa~~~~~~~l~v~GG~~~~g~~l~d~~~l~~-~~~~~W~~~~~~g~~P~~R--------~~hsav 190 (810)
+.+ +|. +|.+|+++++ +++|||+||....+....++|.+.. .++.+|+.+... |.+| .++.++
T Consensus 204 ~~~---~p~~~~~~~a~v~~-~~~iYv~GG~~~~~~~~~~~~~~~~~~~~~~W~~~~~~---p~~~~~~~~~~~~~~~a~ 276 (376)
T PRK14131 204 AGE---SPFLGTAGSAVVIK-GNKLWLINGEIKPGLRTDAVKQGKFTGNNLKWQKLPDL---PPAPGGSSQEGVAGAFAG 276 (376)
T ss_pred CCc---CCCCCCCcceEEEE-CCEEEEEeeeECCCcCChhheEEEecCCCcceeecCCC---CCCCcCCcCCccceEece
Confidence 765 664 6767766655 5669999998765555666776654 345577766533 3343 234467
Q ss_pred EECCEEEEEcccCCCCC-------------CCCCCceEEEEECCCCcEEEcccCccCCCCCCCCCCCCCCCCCCcceeeE
Q 003577 191 FVGARLHVTGGALRGGR-------------AIEGEAAVAVLDTAAGVWLDRNGLVTSSRTSKGHGEHDPSLELMRRCRHA 257 (810)
Q Consensus 191 ~~~~~l~V~GG~~~~~~-------------~~~~~~~l~~yD~~t~~W~~v~~~~~~~~~~~~~~~~~~~~~p~~R~~hs 257 (810)
.++++|||+||...... .......+.+||+++++|+.+..+ |.+|..|+
T Consensus 277 ~~~~~iyv~GG~~~~~~~~~~~~~~~~~~~~~~~~~~~e~yd~~~~~W~~~~~l------------------p~~r~~~~ 338 (376)
T PRK14131 277 YSNGVLLVAGGANFPGARENYQNGKLYAHEGLKKSWSDEIYALVNGKWQKVGEL------------------PQGLAYGV 338 (376)
T ss_pred eECCEEEEeeccCCCCChhhhhcCCcccccCCcceeehheEEecCCcccccCcC------------------CCCccceE
Confidence 78999999999764220 011123467999999999988766 66898899
Q ss_pred EEEeCCEEEEEcCCCC-CCCCCcEEEEeCCC
Q 003577 258 SASIGVRIYIYGGLKG-DILLDDFLVAENSP 287 (810)
Q Consensus 258 ~~~~~~~i~I~GG~~~-~~~~~Dl~~ld~~~ 287 (810)
+++++++|||+||... ...++|+++|+...
T Consensus 339 av~~~~~iyv~GG~~~~~~~~~~v~~~~~~~ 369 (376)
T PRK14131 339 SVSWNNGVLLIGGETAGGKAVSDVTLLSWDG 369 (376)
T ss_pred EEEeCCEEEEEcCCCCCCcEeeeEEEEEEcC
Confidence 9999999999999764 36788999998775
No 38
>TIGR03548 mutarot_permut cyclically-permuted mutatrotase family protein. Members of this protein family show essentially full-length homology, cyclically permuted, to YjhT from Escherichia coli. YjhT was shown to act as a mutarotase for sialic acid, and by this ability to be able to act as a virulence factor. Members of the YjhT family (TIGR03547) and this cyclically-permuted family have multiple repeats of the beta-propeller-forming Kelch repeat.
Probab=99.95 E-value=1.2e-25 Score=246.32 Aligned_cols=245 Identities=17% Similarity=0.192 Sum_probs=184.3
Q ss_pred ccccccEEEEECCEEEEECccCCCC---------CccCcEEEEEccCCceEEEEEeecCCCCCcccccEEEEECCcEEEE
Q 003577 23 SPRAAHAAAAVGTMVVFQGGIGPAG---------HSTDDLYVLDLTNDKFKWHRVVVQGQGPGPRYGHVMDLVSQRYLVS 93 (810)
Q Consensus 23 ~~R~~haa~~~~~~lyv~GG~~~~~---------~~~~dl~~lDl~t~~~~W~~v~~~g~~P~~R~~Hs~~~v~~~~l~V 93 (810)
..+++|.++++++.|||+||.+... ...+++|+|+..+.+.+|..+.. +|.+|..|+++++++ .||+
T Consensus 2 ~~~~g~~~~~~~~~l~v~GG~~~~~~~~~~~g~~~~~~~v~~~~~~~~~~~W~~~~~---lp~~r~~~~~~~~~~-~lyv 77 (323)
T TIGR03548 2 LGVAGCYAGIIGDYILVAGGCNFPEDPLAEGGKKKNYKGIYIAKDENSNLKWVKDGQ---LPYEAAYGASVSVEN-GIYY 77 (323)
T ss_pred CceeeEeeeEECCEEEEeeccCCCCCchhhCCcEEeeeeeEEEecCCCceeEEEccc---CCccccceEEEEECC-EEEE
Confidence 4688999999999999999987432 24578999973333357988764 788998888888876 5999
Q ss_pred EccCCCCCCCCcEEEEecCCCCc--EEEEecCCCCCCCcccceEEEEeCCcEEEEEcccCCCCCccccEEEEEeCCCCeE
Q 003577 94 VSGNDGKRVLSDAWALDTAQKPY--VWQRLNPEGDRPSARMYATASARSDGMFLLCGGRDASGAPLADAYGLLMHRNGQW 171 (810)
Q Consensus 94 fGG~~g~~~~ndv~~yd~~~~~~--~W~~i~~~g~~P~~R~~hsa~~~~~~~l~v~GG~~~~g~~l~d~~~l~~~~~~~W 171 (810)
+||.++...++++|+||+.++.+ .|+.+ ..+|.+|..|+++++. ++|||+||... +..++++|.++.. +.+|
T Consensus 78 iGG~~~~~~~~~v~~~d~~~~~w~~~~~~~---~~lp~~~~~~~~~~~~-~~iYv~GG~~~-~~~~~~v~~yd~~-~~~W 151 (323)
T TIGR03548 78 IGGSNSSERFSSVYRITLDESKEELICETI---GNLPFTFENGSACYKD-GTLYVGGGNRN-GKPSNKSYLFNLE-TQEW 151 (323)
T ss_pred EcCCCCCCCceeEEEEEEcCCceeeeeeEc---CCCCcCccCceEEEEC-CEEEEEeCcCC-CccCceEEEEcCC-CCCe
Confidence 99998888899999999988832 23444 4488899999988775 56999999754 3557889888876 4588
Q ss_pred EEEeCCCCCCCcccceEEEEECCEEEEEcccCCCCCCCCCCceEEEEECCCCcEEEcccCccCCCCCCCCCCCCCCCCCC
Q 003577 172 EWTLAPGVAPSPRYQHAAVFVGARLHVTGGALRGGRAIEGEAAVAVLDTAAGVWLDRNGLVTSSRTSKGHGEHDPSLELM 251 (810)
Q Consensus 172 ~~~~~~g~~P~~R~~hsav~~~~~l~V~GG~~~~~~~~~~~~~l~~yD~~t~~W~~v~~~~~~~~~~~~~~~~~~~~~p~ 251 (810)
+.+... +..+|.+|+++.++++|||+||.... ..+++++||+++++|+.+..+.. ...|.
T Consensus 152 ~~~~~~--p~~~r~~~~~~~~~~~iYv~GG~~~~-----~~~~~~~yd~~~~~W~~~~~~~~-------------~~~p~ 211 (323)
T TIGR03548 152 FELPDF--PGEPRVQPVCVKLQNELYVFGGGSNI-----AYTDGYKYSPKKNQWQKVADPTT-------------DSEPI 211 (323)
T ss_pred eECCCC--CCCCCCcceEEEECCEEEEEcCCCCc-----cccceEEEecCCCeeEECCCCCC-------------CCCce
Confidence 876532 12479999999999999999998542 23568999999999999876511 11233
Q ss_pred cceeeEEEEe-CCEEEEEcCCCCCC--------------------------------CCCcEEEEeCCCCcccCCCCCC
Q 003577 252 RRCRHASASI-GVRIYIYGGLKGDI--------------------------------LLDDFLVAENSPFQSDVNSPLL 297 (810)
Q Consensus 252 ~R~~hs~~~~-~~~i~I~GG~~~~~--------------------------------~~~Dl~~ld~~~~~~~~~~~~~ 297 (810)
.+..++++++ +++|||+||.+... +.+++++||+.+-+|+...+++
T Consensus 212 ~~~~~~~~~~~~~~iyv~GG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~yd~~~~~W~~~~~~p 290 (323)
T TIGR03548 212 SLLGAASIKINESLLLCIGGFNKDVYNDAVIDLATMKDESLKGYKKEYFLKPPEWYNWNRKILIYNVRTGKWKSIGNSP 290 (323)
T ss_pred eccceeEEEECCCEEEEECCcCHHHHHHHHhhhhhccchhhhhhHHHHhCCCccccCcCceEEEEECCCCeeeEccccc
Confidence 4444555444 68999999987531 2478999999999999877654
No 39
>KOG4441 consensus Proteins containing BTB/POZ and Kelch domains, involved in regulatory/signal transduction processes [Signal transduction mechanisms; General function prediction only]
Probab=99.94 E-value=3.3e-25 Score=257.52 Aligned_cols=247 Identities=21% Similarity=0.305 Sum_probs=207.9
Q ss_pred CCccccccEEEEECCEEEEECccCCCCCccCcEEEEEccCCceEEEEEeecCCCCCcccccEEEEECCcEEEEEccCC-C
Q 003577 21 PPSPRAAHAAAAVGTMVVFQGGIGPAGHSTDDLYVLDLTNDKFKWHRVVVQGQGPGPRYGHVMDLVSQRYLVSVSGND-G 99 (810)
Q Consensus 21 ~P~~R~~haa~~~~~~lyv~GG~~~~~~~~~dl~~lDl~t~~~~W~~v~~~g~~P~~R~~Hs~~~v~~~~l~VfGG~~-g 99 (810)
.+++|....- ...+.||++||........+.+.+||+.++ +|..+.. +|.+|..|+++++++ .+|+.||++ +
T Consensus 272 ~~~~~t~~r~-~~~~~l~~vGG~~~~~~~~~~ve~yd~~~~--~w~~~a~---m~~~r~~~~~~~~~~-~lYv~GG~~~~ 344 (571)
T KOG4441|consen 272 MQSPRTRPRR-SVSGKLVAVGGYNRQGQSLRSVECYDPKTN--EWSSLAP---MPSPRCRVGVAVLNG-KLYVVGGYDSG 344 (571)
T ss_pred ccCCCcccCc-CCCCeEEEECCCCCCCcccceeEEecCCcC--cEeecCC---CCcccccccEEEECC-EEEEEccccCC
Confidence 4555555443 456899999999876678899999999995 4998875 889999999998887 599999999 7
Q ss_pred CCCCCcEEEEecCCCCcEEEEecCCCCCCCcccceEEEEeCCcEEEEEcccCCCCCccccEEEEEeCCCCeEEEEeCCCC
Q 003577 100 KRVLSDAWALDTAQKPYVWQRLNPEGDRPSARMYATASARSDGMFLLCGGRDASGAPLADAYGLLMHRNGQWEWTLAPGV 179 (810)
Q Consensus 100 ~~~~ndv~~yd~~~~~~~W~~i~~~g~~P~~R~~hsa~~~~~~~l~v~GG~~~~g~~l~d~~~l~~~~~~~W~~~~~~g~ 179 (810)
...++++|+||+.++ +|+++++ ++.+|..|+++++. ++||+.||+++. ..++++..++..++ +|+.+.+.
T Consensus 345 ~~~l~~ve~YD~~~~--~W~~~a~---M~~~R~~~~v~~l~-g~iYavGG~dg~-~~l~svE~YDp~~~-~W~~va~m-- 414 (571)
T KOG4441|consen 345 SDRLSSVERYDPRTN--QWTPVAP---MNTKRSDFGVAVLD-GKLYAVGGFDGE-KSLNSVECYDPVTN-KWTPVAPM-- 414 (571)
T ss_pred CcccceEEEecCCCC--ceeccCC---ccCccccceeEEEC-CEEEEEeccccc-cccccEEEecCCCC-cccccCCC--
Confidence 889999999999999 8999877 88899999998775 559999999965 66788888877655 88866543
Q ss_pred CCCcccceEEEEECCEEEEEcccCCCCCCCCCCceEEEEECCCCcEEEcccCccCCCCCCCCCCCCCCCCCCcceeeEEE
Q 003577 180 APSPRYQHAAVFVGARLHVTGGALRGGRAIEGEAAVAVLDTAAGVWLDRNGLVTSSRTSKGHGEHDPSLELMRRCRHASA 259 (810)
Q Consensus 180 ~P~~R~~hsav~~~~~l~V~GG~~~~~~~~~~~~~l~~yD~~t~~W~~v~~~~~~~~~~~~~~~~~~~~~p~~R~~hs~~ 259 (810)
+.+|++|+++.++++||++||..+... ..+.+.+||+.+++|+.++++ +.+|.+|+++
T Consensus 415 -~~~r~~~gv~~~~g~iYi~GG~~~~~~---~l~sve~YDP~t~~W~~~~~M------------------~~~R~~~g~a 472 (571)
T KOG4441|consen 415 -LTRRSGHGVAVLGGKLYIIGGGDGSSN---CLNSVECYDPETNTWTLIAPM------------------NTRRSGFGVA 472 (571)
T ss_pred -CcceeeeEEEEECCEEEEEcCcCCCcc---ccceEEEEcCCCCceeecCCc------------------ccccccceEE
Confidence 559999999999999999999876543 466799999999999999998 5599999999
Q ss_pred EeCCEEEEEcCCCCCCCCCcEEEEeCCCCcccCCCCCCCCCCCCCCc
Q 003577 260 SIGVRIYIYGGLKGDILLDDFLVAENSPFQSDVNSPLLTSERAPTHT 306 (810)
Q Consensus 260 ~~~~~i~I~GG~~~~~~~~Dl~~ld~~~~~~~~~~~~~~~~~~~~~~ 306 (810)
+++++||++||+++...+..+.+||+.+.+|....++..+....+.+
T Consensus 473 ~~~~~iYvvGG~~~~~~~~~VE~ydp~~~~W~~v~~m~~~rs~~g~~ 519 (571)
T KOG4441|consen 473 VLNGKIYVVGGFDGTSALSSVERYDPETNQWTMVAPMTSPRSAVGVV 519 (571)
T ss_pred EECCEEEEECCccCCCccceEEEEcCCCCceeEcccCccccccccEE
Confidence 99999999999999777888999999999999887666665554433
No 40
>TIGR03547 muta_rot_YjhT mutatrotase, YjhT family. Members of this protein family contain multiple copies of the beta-propeller-forming Kelch repeat. All are full-length homologs to YjhT of Escherichia coli, which has been identified as a mutarotase for sialic acid. This protein improves bacterial ability to obtain host sialic acid, and thus serves as a virulence factor. Some bacteria carry what appears to be a cyclically permuted homolog of this protein.
Probab=99.93 E-value=3.5e-24 Score=237.20 Aligned_cols=249 Identities=19% Similarity=0.190 Sum_probs=182.3
Q ss_pred CCCccccccEEEEECCEEEEECccCCCCCccCcEEEEEccCCceEEEEEeecCCCC-CcccccEEEEECCcEEEEEccCC
Q 003577 20 EPPSPRAAHAAAAVGTMVVFQGGIGPAGHSTDDLYVLDLTNDKFKWHRVVVQGQGP-GPRYGHVMDLVSQRYLVSVSGND 98 (810)
Q Consensus 20 ~~P~~R~~haa~~~~~~lyv~GG~~~~~~~~~dl~~lDl~t~~~~W~~v~~~g~~P-~~R~~Hs~~~v~~~~l~VfGG~~ 98 (810)
.+|.+|..++++++++.|||+||.. .+++|+||+.....+|..+++ +| .+|..|+++++++. |||+||..
T Consensus 3 ~lp~~~~~~~~~~~~~~vyv~GG~~-----~~~~~~~d~~~~~~~W~~l~~---~p~~~R~~~~~~~~~~~-iYv~GG~~ 73 (346)
T TIGR03547 3 DLPVGFKNGTGAIIGDKVYVGLGSA-----GTSWYKLDLKKPSKGWQKIAD---FPGGPRNQAVAAAIDGK-LYVFGGIG 73 (346)
T ss_pred CCCccccCceEEEECCEEEEEcccc-----CCeeEEEECCCCCCCceECCC---CCCCCcccceEEEECCE-EEEEeCCC
Confidence 4788999999999999999999973 267999998543356998875 66 58999999998864 99999985
Q ss_pred CC------CCCCcEEEEecCCCCcEEEEecCCCCCCCcccceEEEEeCCcEEEEEcccCCCC------------------
Q 003577 99 GK------RVLSDAWALDTAQKPYVWQRLNPEGDRPSARMYATASARSDGMFLLCGGRDASG------------------ 154 (810)
Q Consensus 99 g~------~~~ndv~~yd~~~~~~~W~~i~~~g~~P~~R~~hsa~~~~~~~l~v~GG~~~~g------------------ 154 (810)
.. ..++++|+||+.++ +|+++.. ..|.+|.+|++++..+++||++||++...
T Consensus 74 ~~~~~~~~~~~~~v~~Yd~~~~--~W~~~~~--~~p~~~~~~~~~~~~~g~IYviGG~~~~~~~~~~~~~~~~~~~~~~~ 149 (346)
T TIGR03547 74 KANSEGSPQVFDDVYRYDPKKN--SWQKLDT--RSPVGLLGASGFSLHNGQAYFTGGVNKNIFDGYFADLSAADKDSEPK 149 (346)
T ss_pred CCCCCCcceecccEEEEECCCC--EEecCCC--CCCCcccceeEEEEeCCEEEEEcCcChHHHHHHHhhHhhcCccchhh
Confidence 42 25789999999999 9999863 35777888877755677899999986320
Q ss_pred ---------------CccccEEEEEeCCCCeEEEEeCCCCCC-CcccceEEEEECCEEEEEcccCCCCCCCCCCceEEEE
Q 003577 155 ---------------APLADAYGLLMHRNGQWEWTLAPGVAP-SPRYQHAAVFVGARLHVTGGALRGGRAIEGEAAVAVL 218 (810)
Q Consensus 155 ---------------~~l~d~~~l~~~~~~~W~~~~~~g~~P-~~R~~hsav~~~~~l~V~GG~~~~~~~~~~~~~l~~y 218 (810)
..+++++.|+.. +.+|+.+.. .| .+|++|+++.++++|||+||...... ...++++|
T Consensus 150 ~~~~~~~~~~~~~~~~~~~~v~~YDp~-t~~W~~~~~---~p~~~r~~~~~~~~~~~iyv~GG~~~~~~---~~~~~~~y 222 (346)
T TIGR03547 150 DKLIAAYFSQPPEDYFWNKNVLSYDPS-TNQWRNLGE---NPFLGTAGSAIVHKGNKLLLINGEIKPGL---RTAEVKQY 222 (346)
T ss_pred hhhHHHHhCCChhHcCccceEEEEECC-CCceeECcc---CCCCcCCCceEEEECCEEEEEeeeeCCCc---cchheEEE
Confidence 013677888776 558887643 34 47899999999999999999854321 12346555
Q ss_pred E--CCCCcEEEcccCccCCCCCCCCCCCCCCCCCCcceeeEEEEeCCEEEEEcCCCCC-----------------CCCCc
Q 003577 219 D--TAAGVWLDRNGLVTSSRTSKGHGEHDPSLELMRRCRHASASIGVRIYIYGGLKGD-----------------ILLDD 279 (810)
Q Consensus 219 D--~~t~~W~~v~~~~~~~~~~~~~~~~~~~~~p~~R~~hs~~~~~~~i~I~GG~~~~-----------------~~~~D 279 (810)
| +++++|..+..+... ....+..|.+|++++++++|||+||.+.. ..+..
T Consensus 223 ~~~~~~~~W~~~~~m~~~-----------r~~~~~~~~~~~a~~~~~~Iyv~GG~~~~~~~~~~~~~~~~~~~~~~~~~~ 291 (346)
T TIGR03547 223 LFTGGKLEWNKLPPLPPP-----------KSSSQEGLAGAFAGISNGVLLVAGGANFPGAQENYKNGKLYAHEGLIKAWS 291 (346)
T ss_pred EecCCCceeeecCCCCCC-----------CCCccccccEEeeeEECCEEEEeecCCCCCchhhhhcCCccccCCCCceeE
Confidence 5 577899998876210 00012245678888999999999997521 11234
Q ss_pred EEEEeCCCCcccCCCCCCCC
Q 003577 280 FLVAENSPFQSDVNSPLLTS 299 (810)
Q Consensus 280 l~~ld~~~~~~~~~~~~~~~ 299 (810)
+.+||+++-+|+...+++.+
T Consensus 292 ~e~yd~~~~~W~~~~~lp~~ 311 (346)
T TIGR03547 292 SEVYALDNGKWSKVGKLPQG 311 (346)
T ss_pred eeEEEecCCcccccCCCCCC
Confidence 67788888889888777554
No 41
>PHA02790 Kelch-like protein; Provisional
Probab=99.92 E-value=1.7e-23 Score=240.77 Aligned_cols=212 Identities=16% Similarity=0.267 Sum_probs=174.4
Q ss_pred cE-EEEECCEEEEECccCCCCCccCcEEEEEccCCceEEEEEeecCCCCCcccccEEEEECCcEEEEEccCCCCCCCCcE
Q 003577 28 HA-AAAVGTMVVFQGGIGPAGHSTDDLYVLDLTNDKFKWHRVVVQGQGPGPRYGHVMDLVSQRYLVSVSGNDGKRVLSDA 106 (810)
Q Consensus 28 ha-a~~~~~~lyv~GG~~~~~~~~~dl~~lDl~t~~~~W~~v~~~g~~P~~R~~Hs~~~v~~~~l~VfGG~~g~~~~ndv 106 (810)
|+ .+..++.||++||.... ...+.+++||+.+++ |..+++ +|.+|..|+++++++ .+|++||.++. +++
T Consensus 264 ~~~~~~~~~~lyviGG~~~~-~~~~~v~~Ydp~~~~--W~~~~~---m~~~r~~~~~v~~~~-~iYviGG~~~~---~sv 333 (480)
T PHA02790 264 MCTSTHVGEVVYLIGGWMNN-EIHNNAIAVNYISNN--WIPIPP---MNSPRLYASGVPANN-KLYVVGGLPNP---TSV 333 (480)
T ss_pred CcceEEECCEEEEEcCCCCC-CcCCeEEEEECCCCE--EEECCC---CCchhhcceEEEECC-EEEEECCcCCC---Cce
Confidence 44 34479999999998643 366789999999955 999875 788999999988876 59999998643 679
Q ss_pred EEEecCCCCcEEEEecCCCCCCCcccceEEEEeCCcEEEEEcccCCCCCccccEEEEEeCCCCeEEEEeCCCCCCCcccc
Q 003577 107 WALDTAQKPYVWQRLNPEGDRPSARMYATASARSDGMFLLCGGRDASGAPLADAYGLLMHRNGQWEWTLAPGVAPSPRYQ 186 (810)
Q Consensus 107 ~~yd~~~~~~~W~~i~~~g~~P~~R~~hsa~~~~~~~l~v~GG~~~~g~~l~d~~~l~~~~~~~W~~~~~~g~~P~~R~~ 186 (810)
++||+.++ +|+.+++ +|.+|.+|+++++ +++||++||.+.. .+.+..++. .+++|+...+ +|.+|++
T Consensus 334 e~ydp~~n--~W~~~~~---l~~~r~~~~~~~~-~g~IYviGG~~~~---~~~ve~ydp-~~~~W~~~~~---m~~~r~~ 400 (480)
T PHA02790 334 ERWFHGDA--AWVNMPS---LLKPRCNPAVASI-NNVIYVIGGHSET---DTTTEYLLP-NHDQWQFGPS---TYYPHYK 400 (480)
T ss_pred EEEECCCC--eEEECCC---CCCCCcccEEEEE-CCEEEEecCcCCC---CccEEEEeC-CCCEEEeCCC---CCCcccc
Confidence 99999999 9999876 8889999888766 4669999998643 244555554 5668887644 4779999
Q ss_pred eEEEEECCEEEEEcccCCCCCCCCCCceEEEEECCCCcEEEcccCccCCCCCCCCCCCCCCCCCCcceeeEEEEeCCEEE
Q 003577 187 HAAVFVGARLHVTGGALRGGRAIEGEAAVAVLDTAAGVWLDRNGLVTSSRTSKGHGEHDPSLELMRRCRHASASIGVRIY 266 (810)
Q Consensus 187 hsav~~~~~l~V~GG~~~~~~~~~~~~~l~~yD~~t~~W~~v~~~~~~~~~~~~~~~~~~~~~p~~R~~hs~~~~~~~i~ 266 (810)
|+++.++++|||+||. +.+||+++++|+.++++ |.+|.++++++++++||
T Consensus 401 ~~~~~~~~~IYv~GG~------------~e~ydp~~~~W~~~~~m------------------~~~r~~~~~~v~~~~IY 450 (480)
T PHA02790 401 SCALVFGRRLFLVGRN------------AEFYCESSNTWTLIDDP------------------IYPRDNPELIIVDNKLL 450 (480)
T ss_pred ceEEEECCEEEEECCc------------eEEecCCCCcEeEcCCC------------------CCCccccEEEEECCEEE
Confidence 9999999999999983 56899999999998877 56899999999999999
Q ss_pred EEcCCCCCCCCCcEEEEeCCCCcccC
Q 003577 267 IYGGLKGDILLDDFLVAENSPFQSDV 292 (810)
Q Consensus 267 I~GG~~~~~~~~Dl~~ld~~~~~~~~ 292 (810)
++||+++...++.+.+||..+-+|+.
T Consensus 451 viGG~~~~~~~~~ve~Yd~~~~~W~~ 476 (480)
T PHA02790 451 LIGGFYRGSYIDTIEVYNNRTYSWNI 476 (480)
T ss_pred EECCcCCCcccceEEEEECCCCeEEe
Confidence 99998876667889999999988874
No 42
>PRK14131 N-acetylneuraminic acid mutarotase; Provisional
Probab=99.91 E-value=5.7e-23 Score=229.71 Aligned_cols=251 Identities=18% Similarity=0.186 Sum_probs=178.7
Q ss_pred CCCCccccccEEEEECCEEEEECccCCCCCccCcEEEEEccCCceEEEEEeecCCCC-CcccccEEEEECCcEEEEEccC
Q 003577 19 GEPPSPRAAHAAAAVGTMVVFQGGIGPAGHSTDDLYVLDLTNDKFKWHRVVVQGQGP-GPRYGHVMDLVSQRYLVSVSGN 97 (810)
Q Consensus 19 g~~P~~R~~haa~~~~~~lyv~GG~~~~~~~~~dl~~lDl~t~~~~W~~v~~~g~~P-~~R~~Hs~~~v~~~~l~VfGG~ 97 (810)
+.+|.+|..++++.+++.|||+||... +.+|+||+...+.+|..+++ +| .+|.+|+++.+++ .|||+||.
T Consensus 23 ~~lP~~~~~~~~~~~~~~iyv~gG~~~-----~~~~~~d~~~~~~~W~~l~~---~p~~~r~~~~~v~~~~-~IYV~GG~ 93 (376)
T PRK14131 23 PDLPVPFKNGTGAIDNNTVYVGLGSAG-----TSWYKLDLNAPSKGWTKIAA---FPGGPREQAVAAFIDG-KLYVFGGI 93 (376)
T ss_pred CCCCcCccCCeEEEECCEEEEEeCCCC-----CeEEEEECCCCCCCeEECCc---CCCCCcccceEEEECC-EEEEEcCC
Confidence 357889888899999999999999632 45899999753345998764 45 4799999988876 59999998
Q ss_pred CC------CCCCCcEEEEecCCCCcEEEEecCCCCCCCcccceEEEEeCCcEEEEEcccCCCC-----------------
Q 003577 98 DG------KRVLSDAWALDTAQKPYVWQRLNPEGDRPSARMYATASARSDGMFLLCGGRDASG----------------- 154 (810)
Q Consensus 98 ~g------~~~~ndv~~yd~~~~~~~W~~i~~~g~~P~~R~~hsa~~~~~~~l~v~GG~~~~g----------------- 154 (810)
.. ...++++|+||+.++ +|+++.. ..|.+|.+|++++..+++||++||.....
T Consensus 94 ~~~~~~~~~~~~~~v~~YD~~~n--~W~~~~~--~~p~~~~~~~~~~~~~~~IYv~GG~~~~~~~~~~~d~~~~~~~~~~ 169 (376)
T PRK14131 94 GKTNSEGSPQVFDDVYKYDPKTN--SWQKLDT--RSPVGLAGHVAVSLHNGKAYITGGVNKNIFDGYFEDLAAAGKDKTP 169 (376)
T ss_pred CCCCCCCceeEcccEEEEeCCCC--EEEeCCC--CCCCcccceEEEEeeCCEEEEECCCCHHHHHHHHhhhhhcccchhh
Confidence 64 135789999999999 9999864 24777888888775678899999986320
Q ss_pred ----------------CccccEEEEEeCCCCeEEEEeCCCCCC-CcccceEEEEECCEEEEEcccCCCCCCCCCCceEE-
Q 003577 155 ----------------APLADAYGLLMHRNGQWEWTLAPGVAP-SPRYQHAAVFVGARLHVTGGALRGGRAIEGEAAVA- 216 (810)
Q Consensus 155 ----------------~~l~d~~~l~~~~~~~W~~~~~~g~~P-~~R~~hsav~~~~~l~V~GG~~~~~~~~~~~~~l~- 216 (810)
...++++.|+.. +++|+... ..| .+|.+|+++.++++|||+||....+. ...+++
T Consensus 170 ~~~i~~~~~~~~~~~~~~~~~v~~YD~~-t~~W~~~~---~~p~~~~~~~a~v~~~~~iYv~GG~~~~~~---~~~~~~~ 242 (376)
T PRK14131 170 KDKINDAYFDKKPEDYFFNKEVLSYDPS-TNQWKNAG---ESPFLGTAGSAVVIKGNKLWLINGEIKPGL---RTDAVKQ 242 (376)
T ss_pred hhhhHHHHhcCChhhcCcCceEEEEECC-CCeeeECC---cCCCCCCCcceEEEECCEEEEEeeeECCCc---CChhheE
Confidence 023667777766 44887654 235 47889999999999999999754321 123344
Q ss_pred -EEECCCCcEEEcccCccCCCCCCCCCCCCCCCCCCcceeeEEEEeCCEEEEEcCCCCCC--------------CCC---
Q 003577 217 -VLDTAAGVWLDRNGLVTSSRTSKGHGEHDPSLELMRRCRHASASIGVRIYIYGGLKGDI--------------LLD--- 278 (810)
Q Consensus 217 -~yD~~t~~W~~v~~~~~~~~~~~~~~~~~~~~~p~~R~~hs~~~~~~~i~I~GG~~~~~--------------~~~--- 278 (810)
.||+++++|..+..+... + .+..+..+.++.+++++++|||+||.+... -+.
T Consensus 243 ~~~~~~~~~W~~~~~~p~~-~---------~~~~~~~~~~~~a~~~~~~iyv~GG~~~~~~~~~~~~~~~~~~~~~~~~~ 312 (376)
T PRK14131 243 GKFTGNNLKWQKLPDLPPA-P---------GGSSQEGVAGAFAGYSNGVLLVAGGANFPGARENYQNGKLYAHEGLKKSW 312 (376)
T ss_pred EEecCCCcceeecCCCCCC-C---------cCCcCCccceEeceeECCEEEEeeccCCCCChhhhhcCCcccccCCccee
Confidence 557789999998876210 0 001112334455678899999999975311 112
Q ss_pred cEEEEeCCCCcccCCCCCCCC
Q 003577 279 DFLVAENSPFQSDVNSPLLTS 299 (810)
Q Consensus 279 Dl~~ld~~~~~~~~~~~~~~~ 299 (810)
.+.+||+++..|+...+++.+
T Consensus 313 ~~e~yd~~~~~W~~~~~lp~~ 333 (376)
T PRK14131 313 SDEIYALVNGKWQKVGELPQG 333 (376)
T ss_pred ehheEEecCCcccccCcCCCC
Confidence 345788988899887776554
No 43
>PHA02713 hypothetical protein; Provisional
Probab=99.91 E-value=4.8e-23 Score=240.33 Aligned_cols=232 Identities=12% Similarity=0.126 Sum_probs=181.3
Q ss_pred EEEEECccCCCCCccCcEEEEEccCCceEEEEEeecCCCCCcccccEEEEECCcEEEEEccCC-CCCCCCcEEEEecCCC
Q 003577 36 MVVFQGGIGPAGHSTDDLYVLDLTNDKFKWHRVVVQGQGPGPRYGHVMDLVSQRYLVSVSGND-GKRVLSDAWALDTAQK 114 (810)
Q Consensus 36 ~lyv~GG~~~~~~~~~dl~~lDl~t~~~~W~~v~~~g~~P~~R~~Hs~~~v~~~~l~VfGG~~-g~~~~ndv~~yd~~~~ 114 (810)
.|++.||.. ......+++||+.+++ |..+++ +|.+|.+|+++++++ .+||+||.+ +...++++|+||+.++
T Consensus 259 ~l~~~~g~~--~~~~~~v~~yd~~~~~--W~~l~~---mp~~r~~~~~a~l~~-~IYviGG~~~~~~~~~~v~~Yd~~~n 330 (557)
T PHA02713 259 CLVCHDTKY--NVCNPCILVYNINTME--YSVIST---IPNHIINYASAIVDN-EIIIAGGYNFNNPSLNKVYKINIENK 330 (557)
T ss_pred EEEEecCcc--ccCCCCEEEEeCCCCe--EEECCC---CCccccceEEEEECC-EEEEEcCCCCCCCccceEEEEECCCC
Confidence 455666531 2234578999999954 999875 788999999988876 599999986 4456789999999999
Q ss_pred CcEEEEecCCCCCCCcccceEEEEeCCcEEEEEcccCCCCCccccEEEEEeCCCCeEEEEeCCCCCCCcccceEEEEECC
Q 003577 115 PYVWQRLNPEGDRPSARMYATASARSDGMFLLCGGRDASGAPLADAYGLLMHRNGQWEWTLAPGVAPSPRYQHAAVFVGA 194 (810)
Q Consensus 115 ~~~W~~i~~~g~~P~~R~~hsa~~~~~~~l~v~GG~~~~g~~l~d~~~l~~~~~~~W~~~~~~g~~P~~R~~hsav~~~~ 194 (810)
+|..+++ +|.+|.+|++++.+ ++||++||.+.. ..+++++.++.. +.+|+.+. ..|.+|.+|+++.+++
T Consensus 331 --~W~~~~~---m~~~R~~~~~~~~~-g~IYviGG~~~~-~~~~sve~Ydp~-~~~W~~~~---~mp~~r~~~~~~~~~g 399 (557)
T PHA02713 331 --IHVELPP---MIKNRCRFSLAVID-DTIYAIGGQNGT-NVERTIECYTMG-DDKWKMLP---DMPIALSSYGMCVLDQ 399 (557)
T ss_pred --eEeeCCC---CcchhhceeEEEEC-CEEEEECCcCCC-CCCceEEEEECC-CCeEEECC---CCCcccccccEEEECC
Confidence 9998876 88899999888775 569999998654 346777777766 45887654 3588999999999999
Q ss_pred EEEEEcccCCCCCC--------------CCCCceEEEEECCCCcEEEcccCccCCCCCCCCCCCCCCCCCCcceeeEEEE
Q 003577 195 RLHVTGGALRGGRA--------------IEGEAAVAVLDTAAGVWLDRNGLVTSSRTSKGHGEHDPSLELMRRCRHASAS 260 (810)
Q Consensus 195 ~l~V~GG~~~~~~~--------------~~~~~~l~~yD~~t~~W~~v~~~~~~~~~~~~~~~~~~~~~p~~R~~hs~~~ 260 (810)
+|||+||....... ....+.+++||+++++|+.++++ +.+|.+|++++
T Consensus 400 ~IYviGG~~~~~~~~~~~~~~~~~~~~~~~~~~~ve~YDP~td~W~~v~~m------------------~~~r~~~~~~~ 461 (557)
T PHA02713 400 YIYIIGGRTEHIDYTSVHHMNSIDMEEDTHSSNKVIRYDTVNNIWETLPNF------------------WTGTIRPGVVS 461 (557)
T ss_pred EEEEEeCCCcccccccccccccccccccccccceEEEECCCCCeEeecCCC------------------CcccccCcEEE
Confidence 99999998642110 11246799999999999999877 56899999999
Q ss_pred eCCEEEEEcCCCCCCC-CCcEEEEeCCC-CcccCCCCCCCCCCCCC
Q 003577 261 IGVRIYIYGGLKGDIL-LDDFLVAENSP-FQSDVNSPLLTSERAPT 304 (810)
Q Consensus 261 ~~~~i~I~GG~~~~~~-~~Dl~~ld~~~-~~~~~~~~~~~~~~~~~ 304 (810)
++++||++||+++... .+.+++||+++ -+|+...+++.+....+
T Consensus 462 ~~~~IYv~GG~~~~~~~~~~ve~Ydp~~~~~W~~~~~m~~~r~~~~ 507 (557)
T PHA02713 462 HKDDIYVVCDIKDEKNVKTCIFRYNTNTYNGWELITTTESRLSALH 507 (557)
T ss_pred ECCEEEEEeCCCCCCccceeEEEecCCCCCCeeEccccCcccccce
Confidence 9999999999875433 34578999999 79998888877555433
No 44
>PHA03098 kelch-like protein; Provisional
Probab=99.90 E-value=1.3e-22 Score=237.57 Aligned_cols=206 Identities=16% Similarity=0.189 Sum_probs=168.4
Q ss_pred eEEEecCCCcEEEecCCCCCCccccccEEEEECCEEEEECccCCCCCccCcEEEEEccCCceEEEEEeecCCCCCccccc
Q 003577 2 MFSLENGPAGVCRIRPAGEPPSPRAAHAAAAVGTMVVFQGGIGPAGHSTDDLYVLDLTNDKFKWHRVVVQGQGPGPRYGH 81 (810)
Q Consensus 2 l~~~~~~t~~W~~l~~~g~~P~~R~~haa~~~~~~lyv~GG~~~~~~~~~dl~~lDl~t~~~~W~~v~~~g~~P~~R~~H 81 (810)
+|.||+.+++|.++. .+|.+|.+|+++.+++.||++||... ....+++++||+.+++ |..+++ +|.+|++|
T Consensus 313 v~~yd~~~~~W~~~~---~~~~~R~~~~~~~~~~~lyv~GG~~~-~~~~~~v~~yd~~~~~--W~~~~~---lp~~r~~~ 383 (534)
T PHA03098 313 VVSYDTKTKSWNKVP---ELIYPRKNPGVTVFNNRIYVIGGIYN-SISLNTVESWKPGESK--WREEPP---LIFPRYNP 383 (534)
T ss_pred EEEEeCCCCeeeECC---CCCcccccceEEEECCEEEEEeCCCC-CEecceEEEEcCCCCc--eeeCCC---cCcCCccc
Confidence 689999999998875 36789999999999999999999873 4467899999999855 998764 78999999
Q ss_pred EEEEECCcEEEEEccCC-CCCCCCcEEEEecCCCCcEEEEecCCCCCCCcccceEEEEeCCcEEEEEcccCCCCC--ccc
Q 003577 82 VMDLVSQRYLVSVSGND-GKRVLSDAWALDTAQKPYVWQRLNPEGDRPSARMYATASARSDGMFLLCGGRDASGA--PLA 158 (810)
Q Consensus 82 s~~~v~~~~l~VfGG~~-g~~~~ndv~~yd~~~~~~~W~~i~~~g~~P~~R~~hsa~~~~~~~l~v~GG~~~~g~--~l~ 158 (810)
+++.+++ .+||+||.. +...++++++||+.++ +|+.+.+ +|.+|.+|++++.+ +.+|++||...... .++
T Consensus 384 ~~~~~~~-~iYv~GG~~~~~~~~~~v~~yd~~t~--~W~~~~~---~p~~r~~~~~~~~~-~~iyv~GG~~~~~~~~~~~ 456 (534)
T PHA03098 384 CVVNVNN-LIYVIGGISKNDELLKTVECFSLNTN--KWSKGSP---LPISHYGGCAIYHD-GKIYVIGGISYIDNIKVYN 456 (534)
T ss_pred eEEEECC-EEEEECCcCCCCcccceEEEEeCCCC--eeeecCC---CCccccCceEEEEC-CEEEEECCccCCCCCcccc
Confidence 9988876 599999964 3345789999999999 9998865 78899999887765 56999999865422 356
Q ss_pred cEEEEEeCCCCeEEEEeCCCCCCCcccceEEEEECCEEEEEcccCCCCCCCCCCceEEEEECCCCcEEEcccC
Q 003577 159 DAYGLLMHRNGQWEWTLAPGVAPSPRYQHAAVFVGARLHVTGGALRGGRAIEGEAAVAVLDTAAGVWLDRNGL 231 (810)
Q Consensus 159 d~~~l~~~~~~~W~~~~~~g~~P~~R~~hsav~~~~~l~V~GG~~~~~~~~~~~~~l~~yD~~t~~W~~v~~~ 231 (810)
+++.++.. +++|+.+.. .|.+|..|+++.++++|||+||..... ..+++++||+++++|..+...
T Consensus 457 ~v~~yd~~-~~~W~~~~~---~~~~r~~~~~~~~~~~iyv~GG~~~~~----~~~~v~~yd~~~~~W~~~~~~ 521 (534)
T PHA03098 457 IVESYNPV-TNKWTELSS---LNFPRINASLCIFNNKIYVVGGDKYEY----YINEIEVYDDKTNTWTLFCKF 521 (534)
T ss_pred eEEEecCC-CCceeeCCC---CCcccccceEEEECCEEEEEcCCcCCc----ccceeEEEeCCCCEEEecCCC
Confidence 67777765 558887643 467899999999999999999987533 256799999999999988764
No 45
>cd07425 MPP_Shelphs Shewanella-like phosphatases, metallophosphatase domain. This family includes bacterial, eukaryotic, and archeal proteins orthologous to the Shewanella cold-active protein-tyrosine phosphatase, CAPTPase. CAPTPase is an uncharacterized protein that belongs to the Shelph (Shewanella-like phosphatase) family of PPP (phosphoprotein phosphatases). The PPP family is one of two known protein phosphatase families specific for serine and threonine. In addition to Shelps, the PPP family also includes: PP1, PP2A, PP2B (calcineurin), PP4, PP5, PP6, PP7, Bsu1, RdgC, PrpE, PrpA/PrpB, and ApA4 hydrolase. The PPP catalytic domain is defined by three conserved motifs (-GDXHG-, -GDXVDRG- and -GNHE-). The PPP enzyme family is ancient with members found in all eukaryotes, and in most bacterial and archeal genomes. Dephosphorylation of phosphoserines and phosphothreonines on target proteins plays a central role in the regulation of many cellular processes. PPPs belong to the metal
Probab=99.89 E-value=1.4e-22 Score=206.96 Aligned_cols=185 Identities=21% Similarity=0.365 Sum_probs=131.4
Q ss_pred EEEecCCCCHHHHHHHHHHhCCCCCCCCc--ceeeEEEeccccCCCCChHHHHHHHHHHhhc---CCCcEEEecCCcccc
Q 003577 509 KVFGDLHGQFGDLMRLFDEYGFPSTAGDI--TYIDYLFLGDYVDRGQHSLETITLLLALKIE---YPENVHLIRGNHEAA 583 (810)
Q Consensus 509 ~vvGDiHG~~~~L~~~l~~~~~~~~~~~~--~~~~~vfLGDyVDRG~~s~evl~ll~~lk~~---~p~~v~llrGNHE~~ 583 (810)
+||||||||++.|.++|+..++......+ ....+||+|||||||+++.||+.+|++|+.+ .+.++++|+||||.+
T Consensus 1 ~vi~DIHG~~~~l~~ll~~~~~~~~~~~~~~~~d~lv~lGD~vdrG~~~~~vl~~l~~l~~~~~~~~~~v~~l~GNHE~~ 80 (208)
T cd07425 1 VAIGDLHGDLDAFREILKGAGVIDSNDHWIGGSTHLVQLGDIFDRGPDVIEILWLLYKLEQEAAKAGGKVHFLLGNHELM 80 (208)
T ss_pred CEEeCccCCHHHHHHHHHHCCCCCccccccCCCcEEEEECCCcCCCcCHHHHHHHHHHHHHHHHhcCCeEEEeeCCCcHH
Confidence 58999999999999999998864321111 1228999999999999999999999999754 457899999999999
Q ss_pred chhhccCChHH-HHHhhCCC--Cccccc---cccccccccCceeEEEcCcEEEecCCcCCcccchhhhhcccCCcccCCC
Q 003577 584 DINALFGFRLE-CIERMGEN--DGIWAW---TRFNQLFNCLPLAALIEKKIICMHGGIGRSIHSVEQIEKLERPITMDAG 657 (810)
Q Consensus 584 ~~~~~~gf~~e-~~~~~~~~--~~~~~~---~~~~~~f~~lPla~~i~~~il~vHgGi~~~~~~~~~i~~~~rp~~~~~~ 657 (810)
.++..+.+... ....+... .....+ ..+.++++.+|+...++ ++++||||++|
T Consensus 81 ~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~lP~~~~~~-~~~fvHag~~~-------------------- 139 (208)
T cd07425 81 NLCGDFRYVHPKYFNEFGGLAMRRRELFSPGGELGRWLRSKPVIVKVN-DTLFVHGGLGP-------------------- 139 (208)
T ss_pred HHcchhccCChhHHHHHHhhhhhHHHhcCCccHHHHHHHhCCeEEEEC-CEEEEeCCcHH--------------------
Confidence 98754433211 11111000 001122 23478899999999886 58899999922
Q ss_pred chhhhhhccCCCCCCCCCCCCCcCCCCCceeeeCHHHHHHHHHhcCCcEEEEeccccccceEEecCCeEEEEEcc
Q 003577 658 SIILMDLLWSDPTENDSIEGLRPNARGPGLVTFGPDRVSDFCKRNKLQLIIRAHECVMDGFERFAQGQLITLFSA 732 (810)
Q Consensus 658 ~~~~~dllWsdP~~~~~~~~~~~~~rg~~~~~fg~~~~~~fl~~~~l~~iiR~H~~~~~G~~~~~~~~~itvfSa 732 (810)
+|++.... +... ..-+.+.+.++|+.++.++||+||+.++.|...+++|++|+|.+.
T Consensus 140 -------~w~r~y~~-------~~~~----~~~~~~~~~~~l~~~~~~~iv~GHTh~~~~~~~~~~g~~i~ID~g 196 (208)
T cd07425 140 -------LWYRGYSK-------ETSD----KECAAAHLDKVLERLGAKRMVVGHTPQEGGIVTFCGGKVIRIDVG 196 (208)
T ss_pred -------HHhhHhhh-------hhhh----ccchHHHHHHHHHHcCCCeEEEcCeeeecCceEEECCEEEEEeCC
Confidence 34332110 0000 011336788999999999999999999988877899999999874
No 46
>PHA02790 Kelch-like protein; Provisional
Probab=99.88 E-value=5.4e-21 Score=220.00 Aligned_cols=190 Identities=15% Similarity=0.173 Sum_probs=155.6
Q ss_pred eEEEecCCCcEEEecCCCCCCccccccEEEEECCEEEEECccCCCCCccCcEEEEEccCCceEEEEEeecCCCCCccccc
Q 003577 2 MFSLENGPAGVCRIRPAGEPPSPRAAHAAAAVGTMVVFQGGIGPAGHSTDDLYVLDLTNDKFKWHRVVVQGQGPGPRYGH 81 (810)
Q Consensus 2 l~~~~~~t~~W~~l~~~g~~P~~R~~haa~~~~~~lyv~GG~~~~~~~~~dl~~lDl~t~~~~W~~v~~~g~~P~~R~~H 81 (810)
+|.||+.+++|..+.+ +|.+|..|+++.+++.||+.||... .+.+++||+.+++ |..+++ +|.+|.+|
T Consensus 289 v~~Ydp~~~~W~~~~~---m~~~r~~~~~v~~~~~iYviGG~~~----~~sve~ydp~~n~--W~~~~~---l~~~r~~~ 356 (480)
T PHA02790 289 AIAVNYISNNWIPIPP---MNSPRLYASGVPANNKLYVVGGLPN----PTSVERWFHGDAA--WVNMPS---LLKPRCNP 356 (480)
T ss_pred EEEEECCCCEEEECCC---CCchhhcceEEEECCEEEEECCcCC----CCceEEEECCCCe--EEECCC---CCCCCccc
Confidence 6889999999999865 5789999999999999999999752 2568999998854 998875 78999999
Q ss_pred EEEEECCcEEEEEccCCCCCCCCcEEEEecCCCCcEEEEecCCCCCCCcccceEEEEeCCcEEEEEcccCCCCCccccEE
Q 003577 82 VMDLVSQRYLVSVSGNDGKRVLSDAWALDTAQKPYVWQRLNPEGDRPSARMYATASARSDGMFLLCGGRDASGAPLADAY 161 (810)
Q Consensus 82 s~~~v~~~~l~VfGG~~g~~~~ndv~~yd~~~~~~~W~~i~~~g~~P~~R~~hsa~~~~~~~l~v~GG~~~~g~~l~d~~ 161 (810)
+++++++. |||+||.++. .+.+.+||+.++ +|+.+++ +|.+|.+|++++++ ++||++||. ..
T Consensus 357 ~~~~~~g~-IYviGG~~~~--~~~ve~ydp~~~--~W~~~~~---m~~~r~~~~~~~~~-~~IYv~GG~---------~e 418 (480)
T PHA02790 357 AVASINNV-IYVIGGHSET--DTTTEYLLPNHD--QWQFGPS---TYYPHYKSCALVFG-RRLFLVGRN---------AE 418 (480)
T ss_pred EEEEECCE-EEEecCcCCC--CccEEEEeCCCC--EEEeCCC---CCCccccceEEEEC-CEEEEECCc---------eE
Confidence 99888864 9999998654 367999999999 9999876 78899999887665 569999984 22
Q ss_pred EEEeCCCCeEEEEeCCCCCCCcccceEEEEECCEEEEEcccCCCCCCCCCCceEEEEECCCCcEEEcc
Q 003577 162 GLLMHRNGQWEWTLAPGVAPSPRYQHAAVFVGARLHVTGGALRGGRAIEGEAAVAVLDTAAGVWLDRN 229 (810)
Q Consensus 162 ~l~~~~~~~W~~~~~~g~~P~~R~~hsav~~~~~l~V~GG~~~~~~~~~~~~~l~~yD~~t~~W~~v~ 229 (810)
.++ .++++|+.+.. .|.+|..+++++++++|||+||..... ..+.+++||+++++|+...
T Consensus 419 ~yd-p~~~~W~~~~~---m~~~r~~~~~~v~~~~IYviGG~~~~~----~~~~ve~Yd~~~~~W~~~~ 478 (480)
T PHA02790 419 FYC-ESSNTWTLIDD---PIYPRDNPELIIVDNKLLLIGGFYRGS----YIDTIEVYNNRTYSWNIWD 478 (480)
T ss_pred Eec-CCCCcEeEcCC---CCCCccccEEEEECCEEEEECCcCCCc----ccceEEEEECCCCeEEecC
Confidence 344 45668987653 477999999999999999999986422 2456999999999998754
No 47
>PRK13625 bis(5'-nucleosyl)-tetraphosphatase PrpE; Provisional
Probab=99.87 E-value=2e-22 Score=211.17 Aligned_cols=131 Identities=22% Similarity=0.393 Sum_probs=98.0
Q ss_pred CeEEEecCCCCHHHHHHHHHHhCCCCCCCC---cceeeEEEeccccCCCCChHHHHHHHHHHhhcCCCcEEEecCCcccc
Q 003577 507 PVKVFGDLHGQFGDLMRLFDEYGFPSTAGD---ITYIDYLFLGDYVDRGQHSLETITLLLALKIEYPENVHLIRGNHEAA 583 (810)
Q Consensus 507 pi~vvGDiHG~~~~L~~~l~~~~~~~~~~~---~~~~~~vfLGDyVDRG~~s~evl~ll~~lk~~~p~~v~llrGNHE~~ 583 (810)
++.||||||||++.|.++|+.+++....+. ....++||||||||||++|+|||.+|+++. .+.++++||||||.+
T Consensus 2 ~~~vIGDIHG~~~~L~~lL~~~~~~~~~~~~~~~~~d~li~lGDliDRGp~S~~vl~~~~~~~--~~~~~~~l~GNHE~~ 79 (245)
T PRK13625 2 KYDIIGDIHGCYQEFQALTEKLGYNWSSGLPVHPDQRKLAFVGDLTDRGPHSLRMIEIVWELV--EKKAAYYVPGNHCNK 79 (245)
T ss_pred ceEEEEECccCHHHHHHHHHHcCCCcccCcccCCCCCEEEEECcccCCCcChHHHHHHHHHHh--hCCCEEEEeCccHHH
Confidence 589999999999999999999987411100 001279999999999999999999999885 456899999999998
Q ss_pred chhhccCC-------hHHHHHhhCCC---CccccccccccccccCceeEEEc-CcEEEecCCcCCcc
Q 003577 584 DINALFGF-------RLECIERMGEN---DGIWAWTRFNQLFNCLPLAALIE-KKIICMHGGIGRSI 639 (810)
Q Consensus 584 ~~~~~~gf-------~~e~~~~~~~~---~~~~~~~~~~~~f~~lPla~~i~-~~il~vHgGi~~~~ 639 (810)
.++...+- ..+....|... ....+++.+.++|+.||++.+++ ++++|||||+.|..
T Consensus 80 ~l~~~~~~~~~~~~gg~~tl~~~~~~~~~~~~~~~~~~~~~~~~lPl~~~~~~~~~~~vHAG~~~~~ 146 (245)
T PRK13625 80 LYRFFLGRNVTIAHGLETTVAEYEALPSHKQNMIKEKFITLYEQAPLYHILDEGRLVVAHAGIRQDY 146 (245)
T ss_pred HHHHHhCCCccccchhHhHHHHHhccChhhHHHHHHHHHHHHHhCCceEEEeCCCEEEEECCCChHh
Confidence 88755331 12223333211 11235567889999999998774 67999999998863
No 48
>cd07422 MPP_ApaH Escherichia coli ApaH and related proteins, metallophosphatase domain. ApaH (also known as symmetrically cleaving Ap4A hydrolase and bis(5'nucleosyl)-tetraphosphatase) is a bacterial member of the PPP (phosphoprotein phosphatase) family of serine/threonine phosphatases that hydrolyzes the nucleotide-signaling molecule diadenosine tetraphosphate (Ap(4)A) into two ADP and also hydrolyzes Ap(5)A, Gp(4)G, and other extending compounds. Null mutations in apaH result in high intracellular levels of Ap(4)A which correlate with multiple phenotypes, including a decreased expression of catabolite-repressible genes, a reduction in the expression of flagellar operons, and an increased sensitivity to UV and heat. Ap4A hydrolase is important in responding to heat shock and oxidative stress via regulating the concentration of Ap4A in bacteria. Ap4A hydrolase is also thought to play a role in siderophore production, but the mechanism by which ApaH interacts with siderophore pathwa
Probab=99.84 E-value=1.8e-21 Score=203.35 Aligned_cols=160 Identities=23% Similarity=0.370 Sum_probs=113.4
Q ss_pred eEEEecCCCCHHHHHHHHHHhCCCCCCCCcceeeEEEeccccCCCCChHHHHHHHHHHhhcCCCcEEEecCCccccchhh
Q 003577 508 VKVFGDLHGQFGDLMRLFDEYGFPSTAGDITYIDYLFLGDYVDRGQHSLETITLLLALKIEYPENVHLIRGNHEAADINA 587 (810)
Q Consensus 508 i~vvGDiHG~~~~L~~~l~~~~~~~~~~~~~~~~~vfLGDyVDRG~~s~evl~ll~~lk~~~p~~v~llrGNHE~~~~~~ 587 (810)
++||||||||++.|.++|+.+++.+..+ .++||||||||||+|+|||.+|++++ .++++|+||||.+.++.
T Consensus 1 ~yvIGDIHG~~~~L~~LL~~i~~~~~~D-----~Li~lGDlVdRGp~s~evl~~l~~l~----~~v~~VlGNHD~~ll~~ 71 (257)
T cd07422 1 TYAIGDIQGCYDELQRLLEKINFDPAKD-----RLWLVGDLVNRGPDSLETLRFVKSLG----DSAKTVLGNHDLHLLAV 71 (257)
T ss_pred CEEEECCCCCHHHHHHHHHhcCCCCCCC-----EEEEecCcCCCCcCHHHHHHHHHhcC----CCeEEEcCCchHHHHHH
Confidence 5899999999999999999998865433 89999999999999999999999986 58999999999999887
Q ss_pred ccCChH----HHHHhhCCCCccccccccccccccCceeEEEcC-cEEEecCCcCCcccchhhhhcccCCcc----cCCCc
Q 003577 588 LFGFRL----ECIERMGENDGIWAWTRFNQLFNCLPLAALIEK-KIICMHGGIGRSIHSVEQIEKLERPIT----MDAGS 658 (810)
Q Consensus 588 ~~gf~~----e~~~~~~~~~~~~~~~~~~~~f~~lPla~~i~~-~il~vHgGi~~~~~~~~~i~~~~rp~~----~~~~~ 658 (810)
.+|+.. +....+- .....+.+.+++..+|++..+++ ++++|||||+|.. ++++...+.+.++ -+...
T Consensus 72 ~~g~~~~~~~~t~~~~l---~~~~~~~~~~wLr~lPl~~~~~~~~~l~vHAGi~p~w-~~~~~~~~a~eve~~l~~~~~~ 147 (257)
T cd07422 72 AAGIKKPKKKDTLDDIL---NAPDRDELLDWLRHQPLLHRDPELGILMVHAGIPPQW-SIEQALKLAREVEAALRGPNYR 147 (257)
T ss_pred hcCccccccHhHHHHHH---hccchHHHHHHHHhCCCEEEECCccEEEEccCCCCCC-CHHHHHHHHHHHHHHhcCCcHH
Confidence 666431 1111110 11123567899999999998865 8999999999985 4444333222211 12222
Q ss_pred hhhhhhccCCCCCCCCCCCCCcCCCCCc
Q 003577 659 IILMDLLWSDPTENDSIEGLRPNARGPG 686 (810)
Q Consensus 659 ~~~~dllWsdP~~~~~~~~~~~~~rg~~ 686 (810)
.++..+.|+.|. .|.++..|..
T Consensus 148 ~~~~~my~~~p~------~W~~~l~g~~ 169 (257)
T cd07422 148 EFLKNMYGNEPD------RWSDDLTGID 169 (257)
T ss_pred HHHHHhhCCCCc------ccCcccCccH
Confidence 244555555554 2666655544
No 49
>PRK00166 apaH diadenosine tetraphosphatase; Reviewed
Probab=99.84 E-value=4.8e-20 Score=194.74 Aligned_cols=121 Identities=21% Similarity=0.394 Sum_probs=96.3
Q ss_pred CeEEEecCCCCHHHHHHHHHHhCCCCCCCCcceeeEEEeccccCCCCChHHHHHHHHHHhhcCCCcEEEecCCccccchh
Q 003577 507 PVKVFGDLHGQFGDLMRLFDEYGFPSTAGDITYIDYLFLGDYVDRGQHSLETITLLLALKIEYPENVHLIRGNHEAADIN 586 (810)
Q Consensus 507 pi~vvGDiHG~~~~L~~~l~~~~~~~~~~~~~~~~~vfLGDyVDRG~~s~evl~ll~~lk~~~p~~v~llrGNHE~~~~~ 586 (810)
.++||||||||++.|.++|+.+++.+..+ .++||||||||||+|+|||.+|.++ +.++++|+||||.+.+.
T Consensus 2 ~~~vIGDIHG~~~~l~~ll~~~~~~~~~D-----~li~lGDlVdrGp~s~~vl~~l~~l----~~~~~~VlGNHD~~ll~ 72 (275)
T PRK00166 2 ATYAIGDIQGCYDELQRLLEKIDFDPAKD-----TLWLVGDLVNRGPDSLEVLRFVKSL----GDSAVTVLGNHDLHLLA 72 (275)
T ss_pred cEEEEEccCCCHHHHHHHHHhcCCCCCCC-----EEEEeCCccCCCcCHHHHHHHHHhc----CCCeEEEecChhHHHHH
Confidence 48999999999999999999998754332 7999999999999999999999987 35799999999999888
Q ss_pred hccCChHH----HHHhhCCCCccccccccccccccCceeEEE-cCcEEEecCCcCCcc
Q 003577 587 ALFGFRLE----CIERMGENDGIWAWTRFNQLFNCLPLAALI-EKKIICMHGGIGRSI 639 (810)
Q Consensus 587 ~~~gf~~e----~~~~~~~~~~~~~~~~~~~~f~~lPla~~i-~~~il~vHgGi~~~~ 639 (810)
..+|+... ....+- .....+.+.++++.||+...+ ++++++||||++|..
T Consensus 73 ~~~g~~~~~~~~~l~~~l---~~~~~~~~~~~L~~lPl~~~~~~~~~l~vHAGi~p~~ 127 (275)
T PRK00166 73 VAAGIKRNKKKDTLDPIL---EAPDRDELLDWLRHQPLLHVDEELGLVMVHAGIPPQW 127 (275)
T ss_pred hhcCCccccchhHHHHHH---ccccHHHHHHHHHCCCcEEEECCCCEEEEccCCCCCC
Confidence 77765311 111111 112235577899999999886 568999999999974
No 50
>cd07413 MPP_PA3087 Pseudomonas aeruginosa PA3087 and related proteins, metallophosphatase domain. PA3087 is an uncharacterized protein from Pseudomonas aeruginosa with a metallophosphatase domain that belongs to the phosphoprotein phosphatase (PPP) family. The PPP family also includes: PP1, PP2A, PP2B (calcineurin), PP4, PP5, PP6, PP7, Bsu1, RdgC, PrpE, PrpA/PrpB, and ApA4 hydrolase. The PPP catalytic domain is defined by three conserved motifs (-GDXHG-, -GDXVDRG- and -GNHE-). The PPP enzyme family is ancient with members found in all eukaryotes, and in most bacterial and archeal genomes. Dephosphorylation of phosphoserines and phosphothreonines on target proteins plays a central role in the regulation of many cellular processes. PPPs belong to the metallophosphatase (MPP) superfamily. MPPs are functionally diverse, but all share a conserved domain with an active site consisting of two metal ions (usually manganese, iron, or zinc) coordinated with octahedral geometry by a cage of
Probab=99.84 E-value=3e-20 Score=191.80 Aligned_cols=123 Identities=23% Similarity=0.330 Sum_probs=91.7
Q ss_pred EEEecCCCCHHHHHHHHHHhCCCCCCCC--cceeeEEEeccccCCCCChHHHHHHHHHHhhcCCCcEEEecCCccccchh
Q 003577 509 KVFGDLHGQFGDLMRLFDEYGFPSTAGD--ITYIDYLFLGDYVDRGQHSLETITLLLALKIEYPENVHLIRGNHEAADIN 586 (810)
Q Consensus 509 ~vvGDiHG~~~~L~~~l~~~~~~~~~~~--~~~~~~vfLGDyVDRG~~s~evl~ll~~lk~~~p~~v~llrGNHE~~~~~ 586 (810)
+||||||||++.|.++|+.+++....+. .....+|||||||||||+|.|||.+|++++.. .++++|+||||.+.+.
T Consensus 2 ~vIGDIHG~~~~L~~lL~~i~~~~~~~~~~~~~d~lvflGD~IDRGp~S~~vl~~l~~l~~~--~~~~~l~GNHE~~ll~ 79 (222)
T cd07413 2 DFIGDIHGHAEKLVVLLHKLGYQELSGVYRHPERQVVFLGDLIDRGPEIRELLEIVKSMVDA--GHALAVMGNHEFNAIA 79 (222)
T ss_pred EEEEeccCCHHHHHHHHHHcCCCccccccCCCCCEEEEeCcccCCCCCHHHHHHHHHHhhcC--CCEEEEEccCcHHHHH
Confidence 6999999999999999999987532100 00128999999999999999999999998643 4899999999999876
Q ss_pred hccCC-h----------------HHHHHhhCCCCccccccccccccccCceeEEEcCcEEEecCCcC
Q 003577 587 ALFGF-R----------------LECIERMGENDGIWAWTRFNQLFNCLPLAALIEKKIICMHGGIG 636 (810)
Q Consensus 587 ~~~gf-~----------------~e~~~~~~~~~~~~~~~~~~~~f~~lPla~~i~~~il~vHgGi~ 636 (810)
...+. . .+..+.++. ....++.+.++|+.||++... ++++|||||+.
T Consensus 80 ~~~~~~~~~~w~~~~~~~~~~~~~~~l~~~~~--~~~~~~~~~~~l~~lP~~~~~-~~~~~VHAg~~ 143 (222)
T cd07413 80 WHTKDPSGGEWLRAHSKKNLRQHQAFLEQFRE--HSEEHKDWLEWFKTLPLFLDL-GGVRVVHACWD 143 (222)
T ss_pred hhhCCcccchhhhcCCCcccccHHHHHHHHhc--cchhHHHHHHHHhcCCcEEEE-CCEEEEECCcC
Confidence 54321 0 011222221 123456778999999999887 57999999986
No 51
>cd07423 MPP_PrpE Bacillus subtilis PrpE and related proteins, metallophosphatase domain. PrpE (protein phosphatase E) is a bacterial member of the PPP (phosphoprotein phosphatase) family of serine/threonine phosphatases and a key signal transduction pathway component controlling the expression of spore germination receptors GerA and GerK in Bacillus subtilis. PrpE is closely related to ApaH (also known symmetrical Ap(4)A hydrolase and bis(5'nucleosyl)-tetraphosphatase). PrpE has specificity for phosphotyrosine only, unlike the serine/threonine phosphatases to which it is related. The Bacilli members of this family are single domain proteins while the other members have N- and C-terminal domains in addition to this phosphatase domain. The PPP (phosphoprotein phosphatase) family, to which PrpE belongs, is one of two known protein phosphatase families specific for serine and threonine. The PPP family also includes: PP1, PP2A, PP2B (calcineurin), PP4, PP5, PP6, PP7, Bsu1, RdgC, PrpA/Prp
Probab=99.83 E-value=6.5e-21 Score=198.85 Aligned_cols=129 Identities=23% Similarity=0.429 Sum_probs=97.5
Q ss_pred CeEEEecCCCCHHHHHHHHHHhCCCCCCC----CcceeeEEEeccccCCCCChHHHHHHHHHHhhcCCCcEEEecCCccc
Q 003577 507 PVKVFGDLHGQFGDLMRLFDEYGFPSTAG----DITYIDYLFLGDYVDRGQHSLETITLLLALKIEYPENVHLIRGNHEA 582 (810)
Q Consensus 507 pi~vvGDiHG~~~~L~~~l~~~~~~~~~~----~~~~~~~vfLGDyVDRG~~s~evl~ll~~lk~~~p~~v~llrGNHE~ 582 (810)
++.||||||||+.+|+++|+.+++.+.++ .....+++|||||||||++|.|||.+|++++.. .++++||||||.
T Consensus 2 ~i~vigDIHG~~~~L~~ll~~~~~~~~~~~~~~~~~~d~lv~lGDlIDrG~~s~evl~~l~~l~~~--~~~~~v~GNHE~ 79 (234)
T cd07423 2 PFDIIGDVHGCYDELEELLEKLGYRIKRVGTVTHPEGRRAVFVGDLVDRGPDSPEVLRLVMSMVAA--GAALCVPGNHDN 79 (234)
T ss_pred CeEEEEECCCCHHHHHHHHHHcCCccccCccccCCCCCEEEEECCccCCCCCHHHHHHHHHHHhhC--CcEEEEECCcHH
Confidence 78999999999999999999998764320 000127999999999999999999999998754 479999999999
Q ss_pred cchhhccCCh-------HHHHHhhCCCCccccccccccccccCceeEEEc-CcEEEecCCcCCc
Q 003577 583 ADINALFGFR-------LECIERMGENDGIWAWTRFNQLFNCLPLAALIE-KKIICMHGGIGRS 638 (810)
Q Consensus 583 ~~~~~~~gf~-------~e~~~~~~~~~~~~~~~~~~~~f~~lPla~~i~-~~il~vHgGi~~~ 638 (810)
+.++...+.. .+....+... ...+.+.+.++|+.||+...++ ++++|||||+++.
T Consensus 80 ~l~~~~~~~~~~~~~~~~~t~~~~~~~-~~~~~~~~~~~l~~lP~~~~~~~~~~~~vHag~~~~ 142 (234)
T cd07423 80 KLYRKLQGRNVKITHGLEETVAQLEAE-SEEFKEEVIEFYESLPSHLVLDEGKLVVAHAGIKEE 142 (234)
T ss_pred HHHHHhcCCCccccCcccchHHHHhhc-cHHHHHHHHHHHHhCCcEEEeCCCcEEEEeCCCChH
Confidence 9887544311 1122222111 1234567789999999998875 4799999998875
No 52
>TIGR00668 apaH bis(5'-nucleosyl)-tetraphosphatase (symmetrical). Alternate names include diadenosine-tetraphosphatase and Ap4A hydrolase.
Probab=99.83 E-value=1.5e-20 Score=196.02 Aligned_cols=126 Identities=25% Similarity=0.369 Sum_probs=100.6
Q ss_pred CeEEEecCCCCHHHHHHHHHHhCCCCCCCCcceeeEEEeccccCCCCChHHHHHHHHHHhhcCCCcEEEecCCccccchh
Q 003577 507 PVKVFGDLHGQFGDLMRLFDEYGFPSTAGDITYIDYLFLGDYVDRGQHSLETITLLLALKIEYPENVHLIRGNHEAADIN 586 (810)
Q Consensus 507 pi~vvGDiHG~~~~L~~~l~~~~~~~~~~~~~~~~~vfLGDyVDRG~~s~evl~ll~~lk~~~p~~v~llrGNHE~~~~~ 586 (810)
.++||||||||++.|.++|+.+++.+..+ .++||||||||||+|+|||.++.+++ .++++|+||||.+.++
T Consensus 2 ~~YvIGDIHGc~daL~~LL~~i~f~~~~D-----~l~~lGDlVdRGP~slevL~~l~~l~----~~~~~VlGNHD~~lL~ 72 (279)
T TIGR00668 2 ATYLIGDLHGCYDELQALLERVEFDPGQD-----TLWLTGDLVARGPGSLEVLRYVKSLG----DAVRLVLGNHDLHLLA 72 (279)
T ss_pred cEEEEEcccCCHHHHHHHHHHhCcCCCCC-----EEEEeCCccCCCCCHHHHHHHHHhcC----CCeEEEEChhHHHHHH
Confidence 48999999999999999999999875543 79999999999999999999998874 5688999999999999
Q ss_pred hccCCh-----HHHHHhhCCCCccccccccccccccCceeEEEc-CcEEEecCCcCCcccchhhhh
Q 003577 587 ALFGFR-----LECIERMGENDGIWAWTRFNQLFNCLPLAALIE-KKIICMHGGIGRSIHSVEQIE 646 (810)
Q Consensus 587 ~~~gf~-----~e~~~~~~~~~~~~~~~~~~~~f~~lPla~~i~-~~il~vHgGi~~~~~~~~~i~ 646 (810)
..+|+. +.....+ .....+.+.+++..+|+....+ .++++|||||+|.. ++++..
T Consensus 73 ~~~g~~~~~~~d~l~~~l----~a~~~~ell~wLr~lPl~i~~~~~~~~lVHAGi~P~w-~l~~a~ 133 (279)
T TIGR00668 73 VFAGISRNKPKDRLDPLL----EAPDADELLNWLRRQPLLQHDEEKKLVMAHAGITPQW-DLQTAK 133 (279)
T ss_pred HhcCCCccCchHHHHHHH----HccCHHHHHHHHHcCCcEEEeCCCCEEEEecCCCCCC-cHHHHH
Confidence 887752 1111112 1124466789999999998764 47999999999985 454443
No 53
>cd07421 MPP_Rhilphs Rhilph phosphatases, metallophosphatase domain. Rhilphs (Rhizobiales/ Rhodobacterales/ Rhodospirillaceae-like phosphatases) are a phylogenetically distinct group of PPP (phosphoprotein phosphatases), found only in land plants. They are named for their close relationship to to PPP phosphatases from alpha-Proteobacteria, including Rhizobiales, Rhodobacterales and Rhodospirillaceae. The PPP (phosphoprotein phosphatase) family, to which the Rhilphs belong, is one of two known protein phosphatase families specific for serine and threonine. The PPP family also includes: PP1, PP2A, PP2B (calcineurin), PP4, PP5, PP6, PP7, Bsu1, RdgC, PrpE, PrpA/PrpB, and ApA4 hydrolase. The PPP catalytic domain is defined by three conserved motifs (-GDXHG-, -GDXVDRG- and -GNHE-). The PPP enzyme family is ancient with members found in all eukaryotes, and in most bacterial and archeal genomes. Dephosphorylation of phosphoserines and phosphothreonines on target proteins plays a central rol
Probab=99.82 E-value=1.1e-19 Score=189.27 Aligned_cols=82 Identities=30% Similarity=0.455 Sum_probs=66.5
Q ss_pred CeEEEecCCCCHHHHHHHHHHhCCCCCCCCcceeeEEEeccccCCCCChHHHHHHHHHHhhcCCC-cEEEecCCccccch
Q 003577 507 PVKVFGDLHGQFGDLMRLFDEYGFPSTAGDITYIDYLFLGDYVDRGQHSLETITLLLALKIEYPE-NVHLIRGNHEAADI 585 (810)
Q Consensus 507 pi~vvGDiHG~~~~L~~~l~~~~~~~~~~~~~~~~~vfLGDyVDRG~~s~evl~ll~~lk~~~p~-~v~llrGNHE~~~~ 585 (810)
.+++||||||+++.|.++|+.+.............+||||||||||++|.||+.+|++++..+|. ++++|+||||.+++
T Consensus 3 ~iyaIGDIHG~~d~L~~lL~~I~~d~~~~~~~~~~iVfLGDyVDRGPdS~eVld~L~~l~~~~~~~~vv~LrGNHE~~~l 82 (304)
T cd07421 3 VVICVGDIHGYISKLNNLWLNLQSALGPSDFASALVIFLGDYCDRGPETRKVIDFLISLPEKHPKQRHVFLCGNHDFAFA 82 (304)
T ss_pred eEEEEEeccCCHHHHHHHHHHhhhhcCcCcCCCcEEEEeCCcCCCCCCHHHHHHHHHHhhhcccccceEEEecCChHHHH
Confidence 68999999999999999998765321100001126999999999999999999999999999886 68999999998876
Q ss_pred hhc
Q 003577 586 NAL 588 (810)
Q Consensus 586 ~~~ 588 (810)
..+
T Consensus 83 ~fL 85 (304)
T cd07421 83 AFL 85 (304)
T ss_pred hHh
Confidence 644
No 54
>PRK11439 pphA serine/threonine protein phosphatase 1; Provisional
Probab=99.80 E-value=9.3e-20 Score=187.88 Aligned_cols=120 Identities=26% Similarity=0.363 Sum_probs=90.2
Q ss_pred CCeEEEecCCCCHHHHHHHHHHhCCCCCCCCcceeeEEEeccccCCCCChHHHHHHHHHHhhcCCCcEEEecCCccccch
Q 003577 506 APVKVFGDLHGQFGDLMRLFDEYGFPSTAGDITYIDYLFLGDYVDRGQHSLETITLLLALKIEYPENVHLIRGNHEAADI 585 (810)
Q Consensus 506 ~pi~vvGDiHG~~~~L~~~l~~~~~~~~~~~~~~~~~vfLGDyVDRG~~s~evl~ll~~lk~~~p~~v~llrGNHE~~~~ 585 (810)
.+++||||||||+..|+++|+.+++.+..+ +++||||||||||+|.|||.+|.+ .+++.|+||||.+.+
T Consensus 17 ~ri~vigDIHG~~~~L~~lL~~i~~~~~~D-----~li~lGDlvDrGp~s~~vl~~l~~------~~~~~v~GNHE~~~l 85 (218)
T PRK11439 17 RHIWLVGDIHGCFEQLMRKLRHCRFDPWRD-----LLISVGDLIDRGPQSLRCLQLLEE------HWVRAVRGNHEQMAL 85 (218)
T ss_pred CeEEEEEcccCCHHHHHHHHHhcCCCcccC-----EEEEcCcccCCCcCHHHHHHHHHc------CCceEeeCchHHHHH
Confidence 489999999999999999999998764332 799999999999999999999965 268899999999998
Q ss_pred hhccCChHHHHHhhCCC-------CccccccccccccccCceeEEEc---CcEEEecCCcC
Q 003577 586 NALFGFRLECIERMGEN-------DGIWAWTRFNQLFNCLPLAALIE---KKIICMHGGIG 636 (810)
Q Consensus 586 ~~~~gf~~e~~~~~~~~-------~~~~~~~~~~~~f~~lPla~~i~---~~il~vHgGi~ 636 (810)
+...+-....+...|.. .....+..+.++++.||+...++ +++++||||++
T Consensus 86 ~~~~~~~~~~w~~~gg~~~~~l~~~~~~~~~~~~~~l~~LP~~~~~~~~~~~~~~vHAg~p 146 (218)
T PRK11439 86 DALASQQMSLWLMNGGDWFIALTDNQQKQAKTLLEKCQRLPFILEVHCRTGKHVIAHADYP 146 (218)
T ss_pred HHHHCCccchhhhCCChhhhhcchhhhHHHHHHHHHHhcCCcEEEeeccCCCEEEEeCCCC
Confidence 76533211122222211 01112344557899999998763 57999999984
No 55
>PHA02239 putative protein phosphatase
Probab=99.78 E-value=9e-19 Score=181.41 Aligned_cols=140 Identities=25% Similarity=0.402 Sum_probs=100.3
Q ss_pred CeEEEecCCCCHHHHHHHHHHhCCC--CCCCCcceeeEEEeccccCCCCChHHHHHHHHHHhhcCCCcEEEecCCccccc
Q 003577 507 PVKVFGDLHGQFGDLMRLFDEYGFP--STAGDITYIDYLFLGDYVDRGQHSLETITLLLALKIEYPENVHLIRGNHEAAD 584 (810)
Q Consensus 507 pi~vvGDiHG~~~~L~~~l~~~~~~--~~~~~~~~~~~vfLGDyVDRG~~s~evl~ll~~lk~~~p~~v~llrGNHE~~~ 584 (810)
++++||||||++..|.++++.+... +.+ .+||||||||||++|.+|+.+|++++. .+.++++|+||||.+.
T Consensus 2 ~~~~IsDIHG~~~~l~~ll~~i~~~~~~~d------~li~lGD~iDrG~~s~~v~~~l~~~~~-~~~~~~~l~GNHE~~~ 74 (235)
T PHA02239 2 AIYVVPDIHGEYQKLLTIMDKINNERKPEE------TIVFLGDYVDRGKRSKDVVNYIFDLMS-NDDNVVTLLGNHDDEF 74 (235)
T ss_pred eEEEEECCCCCHHHHHHHHHHHhhcCCCCC------EEEEecCcCCCCCChHHHHHHHHHHhh-cCCCeEEEECCcHHHH
Confidence 4799999999999999999987533 222 799999999999999999999998754 4568999999999987
Q ss_pred hhhccCCh--------------HHHHHhhCCCCc---------------------------cccccccccccccCceeEE
Q 003577 585 INALFGFR--------------LECIERMGENDG---------------------------IWAWTRFNQLFNCLPLAAL 623 (810)
Q Consensus 585 ~~~~~gf~--------------~e~~~~~~~~~~---------------------------~~~~~~~~~~f~~lPla~~ 623 (810)
++...+.. .+.+..|+.... ...+..+..+++.||++..
T Consensus 75 l~~~~~~~~~~~~~~~wl~~GG~~Tl~Syg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~fl~~lp~~~~ 154 (235)
T PHA02239 75 YNIMENVDRLSIYDIEWLSRYCIETLNSYGVSTVTLKYSSVEENLRNNYDFIKSELKKLKESDDYRKFKILMVNCRKYYK 154 (235)
T ss_pred HHHHhCchhcccchHHHHHcCCHHHHHHcCCCCccchhhHHHHHHHHhhhhhhhhhhhcccchhhHHHHHHHHhCcceEE
Confidence 76442111 222334432110 0122344558889999988
Q ss_pred EcCcEEEecCCcCCcccchhhhhcccCCcccCCCchhhhhhccCCC
Q 003577 624 IEKKIICMHGGIGRSIHSVEQIEKLERPITMDAGSIILMDLLWSDP 669 (810)
Q Consensus 624 i~~~il~vHgGi~~~~~~~~~i~~~~rp~~~~~~~~~~~dllWsdP 669 (810)
.+ +++|||||+.|.. |++. +...+++|.+.
T Consensus 155 ~~-~~ifVHAGi~p~~-----------~~~~----q~~~~llWiR~ 184 (235)
T PHA02239 155 ED-KYIFSHSGGVSWK-----------PVEE----QTIDQLIWSRD 184 (235)
T ss_pred EC-CEEEEeCCCCCCC-----------Chhh----CCHhHeEEecc
Confidence 85 6999999998772 2211 13468899984
No 56
>cd07424 MPP_PrpA_PrpB PrpA and PrpB, metallophosphatase domain. PrpA and PrpB are bacterial type I serine/threonine and tyrosine phosphatases thought to modulate the expression of proteins that protect the cell upon accumulation of misfolded proteins in the periplasm. The PPP (phosphoprotein phosphatase) family, to which PrpA and PrpB belong, is one of two known protein phosphatase families specific for serine and threonine. This family also includes: PP1, PP2A, PP2B (calcineurin), PP4, PP5, PP6, PP7, Bsu1, RdgC, PrpE, and ApA4 hydrolase. The PPP catalytic domain is defined by three conserved motifs (-GDXHG-, -GDXVDRG- and -GNHE-). The PPP enzyme family is ancient with members found in all eukaryotes, and in most bacterial and archeal genomes. Dephosphorylation of phosphoserines and phosphothreonines on target proteins plays a central role in the regulation of many cellular processes. PPPs belong to the metallophosphatase (MPP) superfamily. MPPs are functionally diverse, but all
Probab=99.78 E-value=4.7e-19 Score=181.47 Aligned_cols=122 Identities=30% Similarity=0.395 Sum_probs=94.5
Q ss_pred CCeEEEecCCCCHHHHHHHHHHhCCCCCCCCcceeeEEEeccccCCCCChHHHHHHHHHHhhcCCCcEEEecCCccccch
Q 003577 506 APVKVFGDLHGQFGDLMRLFDEYGFPSTAGDITYIDYLFLGDYVDRGQHSLETITLLLALKIEYPENVHLIRGNHEAADI 585 (810)
Q Consensus 506 ~pi~vvGDiHG~~~~L~~~l~~~~~~~~~~~~~~~~~vfLGDyVDRG~~s~evl~ll~~lk~~~p~~v~llrGNHE~~~~ 585 (810)
++++|||||||++..|.++++..++.+..+ .++|+|||||||+++.|++.+|.. .++++|+||||.+.+
T Consensus 1 ~ri~~isDiHg~~~~l~~~l~~~~~~~~~d-----~~~~~GD~v~~g~~~~~~~~~l~~------~~~~~v~GNhe~~~~ 69 (207)
T cd07424 1 GRDFVVGDIHGHYSLLQKALDAVGFDPARD-----RLISVGDLIDRGPESLACLELLLE------PWFHAVRGNHEQMAI 69 (207)
T ss_pred CCEEEEECCCCCHHHHHHHHHHcCCCCCCC-----EEEEeCCcccCCCCHHHHHHHHhc------CCEEEeECCChHHHH
Confidence 368999999999999999999987653322 799999999999999999999865 368999999999998
Q ss_pred hhccC--ChHHHHHhhCCCCcc-----ccccccccccccCceeEEEc---CcEEEecCCcCCc
Q 003577 586 NALFG--FRLECIERMGENDGI-----WAWTRFNQLFNCLPLAALIE---KKIICMHGGIGRS 638 (810)
Q Consensus 586 ~~~~g--f~~e~~~~~~~~~~~-----~~~~~~~~~f~~lPla~~i~---~~il~vHgGi~~~ 638 (810)
....+ +..+.+.+++..... ..++.+.++|+.||+...++ .++++||||+.+.
T Consensus 70 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~lP~~~~i~~~g~~~~~vHag~~~~ 132 (207)
T cd07424 70 DALRAEPLDAVRWLANGGEWFLDLPDEELRRWLALKLEQLPLAIEVETEGGKVGIVHADYPSD 132 (207)
T ss_pred hHhhCCCcchhHHHhcCCeehhhcChHHHHHHHHHHHHhCCeEEEEEeCCCEEEEECCCCCcc
Confidence 87655 333444444432111 12344677999999999875 4799999999755
No 57
>PRK09968 serine/threonine-specific protein phosphatase 2; Provisional
Probab=99.74 E-value=3.9e-18 Score=175.57 Aligned_cols=120 Identities=25% Similarity=0.272 Sum_probs=87.2
Q ss_pred CCeEEEecCCCCHHHHHHHHHHhCCCCCCCCcceeeEEEeccccCCCCChHHHHHHHHHHhhcCCCcEEEecCCccccch
Q 003577 506 APVKVFGDLHGQFGDLMRLFDEYGFPSTAGDITYIDYLFLGDYVDRGQHSLETITLLLALKIEYPENVHLIRGNHEAADI 585 (810)
Q Consensus 506 ~pi~vvGDiHG~~~~L~~~l~~~~~~~~~~~~~~~~~vfLGDyVDRG~~s~evl~ll~~lk~~~p~~v~llrGNHE~~~~ 585 (810)
+++.||||||||+..|+++|+.+.+.+..+ .++|||||||||++|.||+.+|.+ .+++.||||||.+.+
T Consensus 15 ~ri~visDiHg~~~~l~~~l~~~~~~~~~d-----~l~~lGD~vdrG~~~~~~l~~l~~------~~~~~v~GNHE~~~~ 83 (218)
T PRK09968 15 RHIWVVGDIHGEYQLLQSRLHQLSFCPETD-----LLISVGDNIDRGPESLNVLRLLNQ------PWFISVKGNHEAMAL 83 (218)
T ss_pred CeEEEEEeccCCHHHHHHHHHhcCCCCCCC-----EEEECCCCcCCCcCHHHHHHHHhh------CCcEEEECchHHHHH
Confidence 489999999999999999999987654332 799999999999999999999864 368999999999988
Q ss_pred hhccCChHHHHHhhCCCCc-------cccccccccccccCceeEEEc---CcEEEecCCcC
Q 003577 586 NALFGFRLECIERMGENDG-------IWAWTRFNQLFNCLPLAALIE---KKIICMHGGIG 636 (810)
Q Consensus 586 ~~~~gf~~e~~~~~~~~~~-------~~~~~~~~~~f~~lPla~~i~---~~il~vHgGi~ 636 (810)
.....-....+...+.... .........+++.||+...+. .++++||||++
T Consensus 84 ~~~~~~~~~~~~~~gg~~~~~l~~~~~~~~~~~~~~L~~LP~~~~~~~~g~~~~~vHAg~p 144 (218)
T PRK09968 84 DAFETGDGNMWLASGGDWFFDLNDSEQQEATDLLLKFHHLPHIIEITNDNIKYVIAHADYP 144 (218)
T ss_pred HHHhcCChhHHHHccCHHHhcCCHHHHHHHHHHHHHHhcCCeEEEEeeCCCcEEEEeCCCC
Confidence 7543211112222211100 011122345889999998763 46899999984
No 58
>COG3055 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=99.55 E-value=2e-13 Score=142.85 Aligned_cols=253 Identities=18% Similarity=0.207 Sum_probs=180.6
Q ss_pred EEEec--CCCcEEEecCCCCCCccccccEEEEECCEEEEECccCCCC----CccCcEEEEEccCCceEEEEEeecCCCCC
Q 003577 3 FSLEN--GPAGVCRIRPAGEPPSPRAAHAAAAVGTMVVFQGGIGPAG----HSTDDLYVLDLTNDKFKWHRVVVQGQGPG 76 (810)
Q Consensus 3 ~~~~~--~t~~W~~l~~~g~~P~~R~~haa~~~~~~lyv~GG~~~~~----~~~~dl~~lDl~t~~~~W~~v~~~g~~P~ 76 (810)
|.+|+ ....|+++.. .+-.+|.+.+++.++++||+|||.+... ...+|+|+||+.+|+ |.++.+. .|.
T Consensus 61 y~ldL~~~~k~W~~~a~--FpG~~rnqa~~a~~~~kLyvFgG~Gk~~~~~~~~~nd~Y~y~p~~ns--W~kl~t~--sP~ 134 (381)
T COG3055 61 YVLDLKKPGKGWTKIAD--FPGGARNQAVAAVIGGKLYVFGGYGKSVSSSPQVFNDAYRYDPSTNS--WHKLDTR--SPT 134 (381)
T ss_pred eehhhhcCCCCceEccc--CCCcccccchheeeCCeEEEeeccccCCCCCceEeeeeEEecCCCCh--hheeccc--ccc
Confidence 45555 3567999864 3346899999999999999999998443 347899999999966 9999874 577
Q ss_pred cccccEEEEECCcEEEEEccCCC----------------------------------CCCCCcEEEEecCCCCcEEEEec
Q 003577 77 PRYGHVMDLVSQRYLVSVSGNDG----------------------------------KRVLSDAWALDTAQKPYVWQRLN 122 (810)
Q Consensus 77 ~R~~Hs~~~v~~~~l~VfGG~~g----------------------------------~~~~ndv~~yd~~~~~~~W~~i~ 122 (810)
...+|+.+..++..++++||.+. .....+++.|++.++ +|+.+-
T Consensus 135 gl~G~~~~~~~~~~i~f~GGvn~~if~~yf~dv~~a~~d~~~~~~i~~~yf~~~~~dy~~n~ev~sy~p~~n--~W~~~G 212 (381)
T COG3055 135 GLVGASTFSLNGTKIYFFGGVNQNIFNGYFEDVGAAGKDKEAVDKIIAHYFDKKAEDYFFNKEVLSYDPSTN--QWRNLG 212 (381)
T ss_pred ccccceeEecCCceEEEEccccHHhhhhhHHhhhhhcccHHHHHHHHHHHhCCCHHHhcccccccccccccc--hhhhcC
Confidence 78999999998878999999621 012346889999988 998764
Q ss_pred CCCCCC-CcccceEEEEeCCcEEEEEcccCCCCCccccEEEEEeCC-CCeEEEEeCC----CCCCCcccceEEEEECCEE
Q 003577 123 PEGDRP-SARMYATASARSDGMFLLCGGRDASGAPLADAYGLLMHR-NGQWEWTLAP----GVAPSPRYQHAAVFVGARL 196 (810)
Q Consensus 123 ~~g~~P-~~R~~hsa~~~~~~~l~v~GG~~~~g~~l~d~~~l~~~~-~~~W~~~~~~----g~~P~~R~~hsav~~~~~l 196 (810)
. .| .++++ ++++..++.+.++-|.--.+.+...++..+... ..+|...... +..+....++-.-..++.+
T Consensus 213 ~---~pf~~~aG-sa~~~~~n~~~lInGEiKpGLRt~~~k~~~~~~~~~~w~~l~~lp~~~~~~~eGvAGaf~G~s~~~~ 288 (381)
T COG3055 213 E---NPFYGNAG-SAVVIKGNKLTLINGEIKPGLRTAEVKQADFGGDNLKWLKLSDLPAPIGSNKEGVAGAFSGKSNGEV 288 (381)
T ss_pred c---CcccCccC-cceeecCCeEEEEcceecCCccccceeEEEeccCceeeeeccCCCCCCCCCccccceeccceeCCeE
Confidence 3 34 34555 666677776777777777777777888877763 4456655322 2222333333344457889
Q ss_pred EEEcccCCCC---------------CCCCCCceEEEEECCCCcEEEcccCccCCCCCCCCCCCCCCCCCCcceeeEEEEe
Q 003577 197 HVTGGALRGG---------------RAIEGEAAVAVLDTAAGVWLDRNGLVTSSRTSKGHGEHDPSLELMRRCRHASASI 261 (810)
Q Consensus 197 ~V~GG~~~~~---------------~~~~~~~~l~~yD~~t~~W~~v~~~~~~~~~~~~~~~~~~~~~p~~R~~hs~~~~ 261 (810)
+|.||..-.+ ..-.-..+||+|| .+.|+.+..+ |.+++...++..
T Consensus 289 lv~GGAnF~Ga~~~y~~Gk~~AH~Gl~K~w~~~Vy~~d--~g~Wk~~GeL------------------p~~l~YG~s~~~ 348 (381)
T COG3055 289 LVAGGANFPGALKAYKNGKFYAHEGLSKSWNSEVYIFD--NGSWKIVGEL------------------PQGLAYGVSLSY 348 (381)
T ss_pred EEecCCCChhHHHHHHhcccccccchhhhhhceEEEEc--CCceeeeccc------------------CCCccceEEEec
Confidence 9999875321 0111267899998 8999998877 668888889999
Q ss_pred CCEEEEEcCC-CCCCCCCcEEEEeCCC
Q 003577 262 GVRIYIYGGL-KGDILLDDFLVAENSP 287 (810)
Q Consensus 262 ~~~i~I~GG~-~~~~~~~Dl~~ld~~~ 287 (810)
++.||++||- ++...+.+++.+-.+.
T Consensus 349 nn~vl~IGGE~~~Gka~~~v~~l~~~g 375 (381)
T COG3055 349 NNKVLLIGGETSGGKATTRVYSLSWDG 375 (381)
T ss_pred CCcEEEEccccCCCeeeeeEEEEEEcC
Confidence 9999999994 4556677777665443
No 59
>KOG2437 consensus Muskelin [Signal transduction mechanisms]
Probab=99.53 E-value=1.6e-15 Score=162.67 Aligned_cols=273 Identities=20% Similarity=0.274 Sum_probs=193.1
Q ss_pred CCCcEEEecCCC-------CCCccccccEEEEECC--EEEEECccCCCCCccCcEEEEEccCCceEEEEEeecCCCCCcc
Q 003577 8 GPAGVCRIRPAG-------EPPSPRAAHAAAAVGT--MVVFQGGIGPAGHSTDDLYVLDLTNDKFKWHRVVVQGQGPGPR 78 (810)
Q Consensus 8 ~t~~W~~l~~~g-------~~P~~R~~haa~~~~~--~lyv~GG~~~~~~~~~dl~~lDl~t~~~~W~~v~~~g~~P~~R 78 (810)
.+..|+++.+.. ..|..|.||.++.-.+ .||+.||.++. ..+.|+|.|+...+ .|+.+.--+..|+.|
T Consensus 237 y~~~W~~i~~~~~~~~~~~~~p~~RgGHQMV~~~~~~CiYLYGGWdG~-~~l~DFW~Y~v~e~--~W~~iN~~t~~PG~R 313 (723)
T KOG2437|consen 237 YKPRWSQIIPKSTKGDGEDNRPGMRGGHQMVIDVQTECVYLYGGWDGT-QDLADFWAYSVKEN--QWTCINRDTEGPGAR 313 (723)
T ss_pred ccccccccCchhhcccccccCccccCcceEEEeCCCcEEEEecCcccc-hhHHHHHhhcCCcc--eeEEeecCCCCCcch
Confidence 457898887655 5789999999998865 99999999854 48899999998874 499998888899999
Q ss_pred cccEEEEE-CCcEEEEEccCCCCC------CCCcEEEEecCCCCcEEEEecCC---CCCCCcccceEEEEeCC-cEEEEE
Q 003577 79 YGHVMDLV-SQRYLVSVSGNDGKR------VLSDAWALDTAQKPYVWQRLNPE---GDRPSARMYATASARSD-GMFLLC 147 (810)
Q Consensus 79 ~~Hs~~~v-~~~~l~VfGG~~g~~------~~ndv~~yd~~~~~~~W~~i~~~---g~~P~~R~~hsa~~~~~-~~l~v~ 147 (810)
.+|-|+.- ..+.+|+.|-+-+.. .-+|+|+||..++ .|..++-. .-.|..-+-|.+++..+ +++|||
T Consensus 314 sCHRMVid~S~~KLYLlG~Y~~sS~r~~~s~RsDfW~FDi~~~--~W~~ls~dt~~dGGP~~vfDHqM~Vd~~k~~iyVf 391 (723)
T KOG2437|consen 314 SCHRMVIDISRRKLYLLGRYLDSSVRNSKSLRSDFWRFDIDTN--TWMLLSEDTAADGGPKLVFDHQMCVDSEKHMIYVF 391 (723)
T ss_pred hhhhhhhhhhHhHHhhhhhccccccccccccccceEEEecCCc--eeEEecccccccCCcceeecceeeEecCcceEEEe
Confidence 99999654 334699999764332 3469999999999 99988533 23688889999998876 589999
Q ss_pred cccCCCC--CccccEEEEEeCCCCeEEEEeCC-------CCCCCcccceEEEEE--CCEEEEEcccCCCC----------
Q 003577 148 GGRDASG--APLADAYGLLMHRNGQWEWTLAP-------GVAPSPRYQHAAVFV--GARLHVTGGALRGG---------- 206 (810)
Q Consensus 148 GG~~~~g--~~l~d~~~l~~~~~~~W~~~~~~-------g~~P~~R~~hsav~~--~~~l~V~GG~~~~~---------- 206 (810)
||+.-+. ..+..+|.++.. ...|...... -+--..|.+|++-+. +.++|++||.....
T Consensus 392 GGr~~~~~e~~f~GLYaf~~~-~~~w~~l~e~~~~~~~vvE~~~sR~ghcmE~~~~n~~ly~fggq~s~~El~L~f~y~I 470 (723)
T KOG2437|consen 392 GGRILTCNEPQFSGLYAFNCQ-CQTWKLLREDSCNAGPVVEDIQSRIGHCMEFHSKNRCLYVFGGQRSKTELNLFFSYDI 470 (723)
T ss_pred cCeeccCCCccccceEEEecC-CccHHHHHHHHhhcCcchhHHHHHHHHHHHhcCCCCeEEeccCcccceEEeehhccee
Confidence 9996542 356667777664 4466544321 111234778877665 45788888763210
Q ss_pred -------------------------------------------------CCCCCCceEEEEECCCCcEEEcccCccCCCC
Q 003577 207 -------------------------------------------------RAIEGEAAVAVLDTAAGVWLDRNGLVTSSRT 237 (810)
Q Consensus 207 -------------------------------------------------~~~~~~~~l~~yD~~t~~W~~v~~~~~~~~~ 237 (810)
.-.+..+.+|+|+..+..|..+..+......
T Consensus 471 ~~E~~~~~s~~~k~dsS~~pS~~f~qRs~~dp~~~~i~~~~G~~~~~~~~e~~~rns~wi~~i~~~~w~cI~~I~~~~~d 550 (723)
T KOG2437|consen 471 DSEHVDIISDGTKKDSSMVPSTGFTQRATIDPELNEIHVLSGLSKDKEKREENVRNSFWIYDIVRNSWSCIYKIDQAAKD 550 (723)
T ss_pred ccccchhhhccCcCccccCCCcchhhhcccCCCCcchhhhcccchhccCccccccCcEEEEEecccchhhHhhhHHhhcc
Confidence 0011156799999999999887655332222
Q ss_pred CCCCC------CCCCCCCCCcceeeEEEEe--CCEEEEEcCCCCC-----CCCCcEEEEeCC
Q 003577 238 SKGHG------EHDPSLELMRRCRHASASI--GVRIYIYGGLKGD-----ILLDDFLVAENS 286 (810)
Q Consensus 238 ~~~~~------~~~~~~~p~~R~~hs~~~~--~~~i~I~GG~~~~-----~~~~Dl~~ld~~ 286 (810)
...+. +......+.+|++|+.++. -.-+|++||+.+. ..++|.|.+++-
T Consensus 551 ~dtvfsvpFp~ks~~~~~~~~rf~h~~~~dL~~~~~yl~Ggn~~~~~~~~m~l~dfW~l~I~ 612 (723)
T KOG2437|consen 551 NDTVFSVPFPTKSLQEEEPCPRFAHQLVYDLLHKVHYLFGGNPGKSCSPKMRLDDFWSLKIC 612 (723)
T ss_pred CCceeeccCCcccccceeccccchhHHHHHHhhhhhhhhcCCCCCCCCchhhhhhHHHHhhc
Confidence 11111 2233456788998887665 3678999998775 447889988875
No 60
>KOG2437 consensus Muskelin [Signal transduction mechanisms]
Probab=99.52 E-value=8.4e-15 Score=157.23 Aligned_cols=213 Identities=18% Similarity=0.288 Sum_probs=158.6
Q ss_pred eEEEEEeecC-------CCCCcccccEEEEE-CCcEEEEEccCCCCCCCCcEEEEecCCCCcEEEEecCCCCCCCcccce
Q 003577 63 FKWHRVVVQG-------QGPGPRYGHVMDLV-SQRYLVSVSGNDGKRVLSDAWALDTAQKPYVWQRLNPEGDRPSARMYA 134 (810)
Q Consensus 63 ~~W~~v~~~g-------~~P~~R~~Hs~~~v-~~~~l~VfGG~~g~~~~ndv~~yd~~~~~~~W~~i~~~g~~P~~R~~h 134 (810)
..|.+++... ..|..|.||.|+.- ++.++|++||++|.+.+.|+|.|+...+ .|+.++..+..|..|++|
T Consensus 239 ~~W~~i~~~~~~~~~~~~~p~~RgGHQMV~~~~~~CiYLYGGWdG~~~l~DFW~Y~v~e~--~W~~iN~~t~~PG~RsCH 316 (723)
T KOG2437|consen 239 PRWSQIIPKSTKGDGEDNRPGMRGGHQMVIDVQTECVYLYGGWDGTQDLADFWAYSVKEN--QWTCINRDTEGPGARSCH 316 (723)
T ss_pred ccccccCchhhcccccccCccccCcceEEEeCCCcEEEEecCcccchhHHHHHhhcCCcc--eeEEeecCCCCCcchhhh
Confidence 4588887654 56999999999664 4468999999999999999999999888 999999888899999999
Q ss_pred EEEEeCC-cEEEEEcccCCC-----CCccccEEEEEeCCCCeEEEEeCC---CCCCCcccceEEEEECCE--EEEEcccC
Q 003577 135 TASARSD-GMFLLCGGRDAS-----GAPLADAYGLLMHRNGQWEWTLAP---GVAPSPRYQHAAVFVGAR--LHVTGGAL 203 (810)
Q Consensus 135 sa~~~~~-~~l~v~GG~~~~-----g~~l~d~~~l~~~~~~~W~~~~~~---g~~P~~R~~hsav~~~~~--l~V~GG~~ 203 (810)
-++.... .++|+.|-+-.. ...-+|.|.++..++ .|.-.... ...|...+.|.|++.+.+ +|||||+.
T Consensus 317 RMVid~S~~KLYLlG~Y~~sS~r~~~s~RsDfW~FDi~~~-~W~~ls~dt~~dGGP~~vfDHqM~Vd~~k~~iyVfGGr~ 395 (723)
T KOG2437|consen 317 RMVIDISRRKLYLLGRYLDSSVRNSKSLRSDFWRFDIDTN-TWMLLSEDTAADGGPKLVFDHQMCVDSEKHMIYVFGGRI 395 (723)
T ss_pred hhhhhhhHhHHhhhhhccccccccccccccceEEEecCCc-eeEEecccccccCCcceeecceeeEecCcceEEEecCee
Confidence 9986543 468888866433 123478999998754 78766543 235889999999999887 99999997
Q ss_pred CCCCCCCCCceEEEEECCCCcEEEcccCccCCCCCCCCCCCCCCCCCCcceeeEEEEe--CCEEEEEcCCCCCCCCCcEE
Q 003577 204 RGGRAIEGEAAVAVLDTAAGVWLDRNGLVTSSRTSKGHGEHDPSLELMRRCRHASASI--GVRIYIYGGLKGDILLDDFL 281 (810)
Q Consensus 204 ~~~~~~~~~~~l~~yD~~t~~W~~v~~~~~~~~~~~~~~~~~~~~~p~~R~~hs~~~~--~~~i~I~GG~~~~~~~~Dl~ 281 (810)
.... ......+|.||+....|..+...... ... .+ .-...|.+|.+-.. ++.+|+|||.+.+.-++=.+
T Consensus 396 ~~~~-e~~f~GLYaf~~~~~~w~~l~e~~~~-~~~-vv------E~~~sR~ghcmE~~~~n~~ly~fggq~s~~El~L~f 466 (723)
T KOG2437|consen 396 LTCN-EPQFSGLYAFNCQCQTWKLLREDSCN-AGP-VV------EDIQSRIGHCMEFHSKNRCLYVFGGQRSKTELNLFF 466 (723)
T ss_pred ccCC-CccccceEEEecCCccHHHHHHHHhh-cCc-ch------hHHHHHHHHHHHhcCCCCeEEeccCcccceEEeehh
Confidence 6442 23467799999999999876644210 000 01 11236888887665 57999999987765555445
Q ss_pred EEeCCC
Q 003577 282 VAENSP 287 (810)
Q Consensus 282 ~ld~~~ 287 (810)
.+++..
T Consensus 467 ~y~I~~ 472 (723)
T KOG2437|consen 467 SYDIDS 472 (723)
T ss_pred cceecc
Confidence 555443
No 61
>COG3055 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=99.26 E-value=2.4e-10 Score=120.02 Aligned_cols=248 Identities=19% Similarity=0.253 Sum_probs=170.4
Q ss_pred CCCCccccccEEEEECCEEEEECccCCCCCccCcEEEEEccCCceEEEEEeecCCCC-CcccccEEEEECCcEEEEEccC
Q 003577 19 GEPPSPRAAHAAAAVGTMVVFQGGIGPAGHSTDDLYVLDLTNDKFKWHRVVVQGQGP-GPRYGHVMDLVSQRYLVSVSGN 97 (810)
Q Consensus 19 g~~P~~R~~haa~~~~~~lyv~GG~~~~~~~~~dl~~lDl~t~~~~W~~v~~~g~~P-~~R~~Hs~~~v~~~~l~VfGG~ 97 (810)
++.|.+--+-+.+.+++.+||.=|. .-...|.+|++...-.|.++.. .| .+|-+.+++++++. ||||||.
T Consensus 31 PdlPvg~KnG~Ga~ig~~~YVGLGs-----~G~afy~ldL~~~~k~W~~~a~---FpG~~rnqa~~a~~~~k-LyvFgG~ 101 (381)
T COG3055 31 PDLPVGFKNGAGALIGDTVYVGLGS-----AGTAFYVLDLKKPGKGWTKIAD---FPGGARNQAVAAVIGGK-LYVFGGY 101 (381)
T ss_pred CCCCccccccccceecceEEEEecc-----CCccceehhhhcCCCCceEccc---CCCcccccchheeeCCe-EEEeecc
Confidence 4567777777888999999996553 2367899999976567999875 44 55888888888765 9999997
Q ss_pred CCC-----CCCCcEEEEecCCCCcEEEEecCCCCCCCcccceEEEEeCCcEEEEEcccCCC--C----------------
Q 003577 98 DGK-----RVLSDAWALDTAQKPYVWQRLNPEGDRPSARMYATASARSDGMFLLCGGRDAS--G---------------- 154 (810)
Q Consensus 98 ~g~-----~~~ndv~~yd~~~~~~~W~~i~~~g~~P~~R~~hsa~~~~~~~l~v~GG~~~~--g---------------- 154 (810)
... +.++|+|+||+.++ +|+++... .|..-.+|+++...+..++++||++.. .
T Consensus 102 Gk~~~~~~~~~nd~Y~y~p~~n--sW~kl~t~--sP~gl~G~~~~~~~~~~i~f~GGvn~~if~~yf~dv~~a~~d~~~~ 177 (381)
T COG3055 102 GKSVSSSPQVFNDAYRYDPSTN--SWHKLDTR--SPTGLVGASTFSLNGTKIYFFGGVNQNIFNGYFEDVGAAGKDKEAV 177 (381)
T ss_pred ccCCCCCceEeeeeEEecCCCC--hhheeccc--cccccccceeEecCCceEEEEccccHHhhhhhHHhhhhhcccHHHH
Confidence 432 35899999999999 99999653 556677899998888899999999754 0
Q ss_pred ---------------CccccEEEEEeCCCCeEEEEeCCCCCCCcccceEEEEECCEEEEEcccCCCCCCCCCCceEEEEE
Q 003577 155 ---------------APLADAYGLLMHRNGQWEWTLAPGVAPSPRYQHAAVFVGARLHVTGGALRGGRAIEGEAAVAVLD 219 (810)
Q Consensus 155 ---------------~~l~d~~~l~~~~~~~W~~~~~~g~~P~~R~~hsav~~~~~l~V~GG~~~~~~~~~~~~~l~~yD 219 (810)
....+++.++.. +.+|.-.- ..+-.++++++.+.-++++.++-|....+-. ...+++++
T Consensus 178 ~~i~~~yf~~~~~dy~~n~ev~sy~p~-~n~W~~~G--~~pf~~~aGsa~~~~~n~~~lInGEiKpGLR---t~~~k~~~ 251 (381)
T COG3055 178 DKIIAHYFDKKAEDYFFNKEVLSYDPS-TNQWRNLG--ENPFYGNAGSAVVIKGNKLTLINGEIKPGLR---TAEVKQAD 251 (381)
T ss_pred HHHHHHHhCCCHHHhcccccccccccc-cchhhhcC--cCcccCccCcceeecCCeEEEEcceecCCcc---ccceeEEE
Confidence 011223333333 33555332 2334577776666667888888887654422 23366777
Q ss_pred CC--CCcEEEcccCccCCCCCCCCCCCCCCCCCCcceeeEEEEeCCEEEEEcCCC--C-----------------CCCCC
Q 003577 220 TA--AGVWLDRNGLVTSSRTSKGHGEHDPSLELMRRCRHASASIGVRIYIYGGLK--G-----------------DILLD 278 (810)
Q Consensus 220 ~~--t~~W~~v~~~~~~~~~~~~~~~~~~~~~p~~R~~hs~~~~~~~i~I~GG~~--~-----------------~~~~~ 278 (810)
.. ..+|..+...... .+.....-.++-.-..++.+++.||-. + ..+.+
T Consensus 252 ~~~~~~~w~~l~~lp~~-----------~~~~~eGvAGaf~G~s~~~~lv~GGAnF~Ga~~~y~~Gk~~AH~Gl~K~w~~ 320 (381)
T COG3055 252 FGGDNLKWLKLSDLPAP-----------IGSNKEGVAGAFSGKSNGEVLVAGGANFPGALKAYKNGKFYAHEGLSKSWNS 320 (381)
T ss_pred eccCceeeeeccCCCCC-----------CCCCccccceeccceeCCeEEEecCCCChhHHHHHHhcccccccchhhhhhc
Confidence 54 4579998765221 111123455555566678899999832 2 16788
Q ss_pred cEEEEeCCCCcccCCCCCCC
Q 003577 279 DFLVAENSPFQSDVNSPLLT 298 (810)
Q Consensus 279 Dl~~ld~~~~~~~~~~~~~~ 298 (810)
++|.|| .-.|+..-.++.
T Consensus 321 ~Vy~~d--~g~Wk~~GeLp~ 338 (381)
T COG3055 321 EVYIFD--NGSWKIVGELPQ 338 (381)
T ss_pred eEEEEc--CCceeeecccCC
Confidence 999999 556777777776
No 62
>PF00149 Metallophos: Calcineurin-like phosphoesterase; InterPro: IPR004843 This domain is found in a diverse range of phosphoesterases [], including protein phosphoserine phosphatases, nucleotidases, sphingomyelin phosphodiesterases and 2'-3' cAMP phosphodiesterases, as well as nucleases such as bacterial SbcD or yeast MRE11. The most conserved regions in this domain centre around the metal chelating residues.; GO: 0016787 hydrolase activity; PDB: 2IAE_C 3DW8_F 3FGA_C 2IE4_C 2NYM_C 2NYL_C 3K7V_C 2NPP_C 2IE3_C 3K7W_C ....
Probab=98.90 E-value=4.1e-09 Score=102.58 Aligned_cols=77 Identities=31% Similarity=0.403 Sum_probs=56.6
Q ss_pred CeEEEecCCCCHHHH---HHHHHHh-CCCCCCCCcceeeEEEeccccCCCCChHHHHHHH--HHHhhcCCCcEEEecCCc
Q 003577 507 PVKVFGDLHGQFGDL---MRLFDEY-GFPSTAGDITYIDYLFLGDYVDRGQHSLETITLL--LALKIEYPENVHLIRGNH 580 (810)
Q Consensus 507 pi~vvGDiHG~~~~L---~~~l~~~-~~~~~~~~~~~~~~vfLGDyVDRG~~s~evl~ll--~~lk~~~p~~v~llrGNH 580 (810)
+|+++||+|+..... .+.+... .....+ -+|++||++|+|..+.+..... ...+...+..+++++|||
T Consensus 2 ri~~isD~H~~~~~~~~~~~~~~~~~~~~~~d------~ii~~GD~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~GNH 75 (200)
T PF00149_consen 2 RILVISDLHGGYDDDSDAFRKLDEIAAENKPD------FIIFLGDLVDGGNPSEEWRAQFWFFIRLLNPKIPVYFILGNH 75 (200)
T ss_dssp EEEEEEBBTTTHHHHCHHHHHHHHHHHHTTTS------EEEEESTSSSSSSHHHHHHHHHHHHHHHHHTTTTEEEEE-TT
T ss_pred eEEEEcCCCCCCcchhHHHHHHHHHhccCCCC------EEEeeccccccccccccchhhhccchhhhhcccccccccccc
Confidence 489999999999987 3333322 222222 6899999999999988877765 555666778999999999
Q ss_pred cccchhhcc
Q 003577 581 EAADINALF 589 (810)
Q Consensus 581 E~~~~~~~~ 589 (810)
|.......+
T Consensus 76 D~~~~~~~~ 84 (200)
T PF00149_consen 76 DYYSGNSFY 84 (200)
T ss_dssp SSHHHHHHH
T ss_pred ccceecccc
Confidence 998766544
No 63
>PLN02772 guanylate kinase
Probab=98.82 E-value=1.8e-08 Score=110.17 Aligned_cols=92 Identities=17% Similarity=0.346 Sum_probs=80.1
Q ss_pred CCCCccccccEEEEECCEEEEECccCCCCCccCcEEEEEccCCceEEEEEeecCCCCCcccccEEEEECCcEEEEEccCC
Q 003577 19 GEPPSPRAAHAAAAVGTMVVFQGGIGPAGHSTDDLYVLDLTNDKFKWHRVVVQGQGPGPRYGHVMDLVSQRYLVSVSGND 98 (810)
Q Consensus 19 g~~P~~R~~haa~~~~~~lyv~GG~~~~~~~~~dl~~lDl~t~~~~W~~v~~~g~~P~~R~~Hs~~~v~~~~l~VfGG~~ 98 (810)
|.-+.++.+|+++.+++++||+||.+..+..++++|+||..+ .+|....+.|..|.||.+|+++++++..|+|+++..
T Consensus 19 ~~~~~~~~~~tav~igdk~yv~GG~~d~~~~~~~v~i~D~~t--~~W~~P~V~G~~P~~r~GhSa~v~~~~rilv~~~~~ 96 (398)
T PLN02772 19 GFGVKPKNRETSVTIGDKTYVIGGNHEGNTLSIGVQILDKIT--NNWVSPIVLGTGPKPCKGYSAVVLNKDRILVIKKGS 96 (398)
T ss_pred CccCCCCCcceeEEECCEEEEEcccCCCccccceEEEEECCC--CcEecccccCCCCCCCCcceEEEECCceEEEEeCCC
Confidence 444568999999999999999999887665789999999999 669999999999999999999999888899998765
Q ss_pred CCCCCCcEEEEecCCC
Q 003577 99 GKRVLSDAWALDTAQK 114 (810)
Q Consensus 99 g~~~~ndv~~yd~~~~ 114 (810)
+.. .++|.+.+.+.
T Consensus 97 ~~~--~~~w~l~~~t~ 110 (398)
T PLN02772 97 APD--DSIWFLEVDTP 110 (398)
T ss_pred CCc--cceEEEEcCCH
Confidence 543 78999988765
No 64
>COG0639 ApaH Diadenosine tetraphosphatase and related serine/threonine protein phosphatases [Signal transduction mechanisms]
Probab=98.81 E-value=6.9e-09 Score=99.58 Aligned_cols=147 Identities=35% Similarity=0.502 Sum_probs=117.2
Q ss_pred chhhccCChHHHHHhhCCCCccccccc---cccccccCceeEEEcC-cEEEecCCcCCcc-cchhhhhcccCCc--ccCC
Q 003577 584 DINALFGFRLECIERMGENDGIWAWTR---FNQLFNCLPLAALIEK-KIICMHGGIGRSI-HSVEQIEKLERPI--TMDA 656 (810)
Q Consensus 584 ~~~~~~gf~~e~~~~~~~~~~~~~~~~---~~~~f~~lPla~~i~~-~il~vHgGi~~~~-~~~~~i~~~~rp~--~~~~ 656 (810)
.+...+|+.+++...++.. ..|.. +.++|+.||+.+++++ .++|.|+++++.+ ..+++++.+.|.. ....
T Consensus 2 ~l~~~~~~~~~~~~~~~~~---~~w~~~~g~~~~~~~lp~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~ 78 (155)
T COG0639 2 LLTALYGFYDEKLRKYGEE---LEWLRAAGGLETFDSLPLAAVAEGGKLLCHHGGLSPGLDRLLDIIEVLDRLRACEVPH 78 (155)
T ss_pred hhhhhhchhHHhhhhcCCc---eeeeeccchhhHHHhhhHHHHhcCCceeeecCCCCcchhhhHHHHHHHhhhhcccCCC
Confidence 3556778888877777543 35766 9999999999999988 9999999999976 6778888777765 3333
Q ss_pred CchhhhhhccCCCCCCCCCCCCCcCCCCCceeeeCHHHHHHHHHhcCCcEEEEeccccccceEEecCCeEEEEEccCCCC
Q 003577 657 GSIILMDLLWSDPTENDSIEGLRPNARGPGLVTFGPDRVSDFCKRNKLQLIIRAHECVMDGFERFAQGQLITLFSATNYC 736 (810)
Q Consensus 657 ~~~~~~dllWsdP~~~~~~~~~~~~~rg~~~~~fg~~~~~~fl~~~~l~~iiR~H~~~~~G~~~~~~~~~itvfSa~~y~ 736 (810)
.+ ...+.+|+++... ....|.+++||.+ ..| .+....|+..+....+.|+|+.+..++...+.+..+|.|++++||
T Consensus 79 ~g-~~~~~~~~~~~~~-~~~~w~~~~~g~~-~~~-~~~~~~f~~~~~~~~~~~~~~~~~~d~~~~~~~~~lt~~~~~~~~ 154 (155)
T COG0639 79 AG-HTHDLLWSDPDGG-DRRIWNPGPRGVP-RDG-GDVTAVFGIVHTPKLIERAHVLYDIDTGAVFGGGLLTAFSAPNYC 154 (155)
T ss_pred cc-ccccccCCCCCCC-cccccccCCCCCC-ccc-cchhhHHhhhcccceEEEEeEEEecCceEEeCCCeeeEEeccccc
Confidence 33 4556699998742 2467899999988 334 678888998888888999999999999988777899999999997
Q ss_pred C
Q 003577 737 G 737 (810)
Q Consensus 737 ~ 737 (810)
.
T Consensus 155 ~ 155 (155)
T COG0639 155 Y 155 (155)
T ss_pred C
Confidence 3
No 65
>PF13964 Kelch_6: Kelch motif
Probab=98.73 E-value=2.6e-08 Score=77.35 Aligned_cols=49 Identities=31% Similarity=0.595 Sum_probs=43.7
Q ss_pred cccccEEEEECCcEEEEEccCCC-CCCCCcEEEEecCCCCcEEEEecCCCCCCCcc
Q 003577 77 PRYGHVMDLVSQRYLVSVSGNDG-KRVLSDAWALDTAQKPYVWQRLNPEGDRPSAR 131 (810)
Q Consensus 77 ~R~~Hs~~~v~~~~l~VfGG~~g-~~~~ndv~~yd~~~~~~~W~~i~~~g~~P~~R 131 (810)
||.+|+++++++ .||||||.+. ...++++|+||++++ +|+++.+ +|.||
T Consensus 1 pR~~~s~v~~~~-~iyv~GG~~~~~~~~~~v~~yd~~t~--~W~~~~~---mp~pR 50 (50)
T PF13964_consen 1 PRYGHSAVVVGG-KIYVFGGYDNSGKYSNDVERYDPETN--TWEQLPP---MPTPR 50 (50)
T ss_pred CCccCEEEEECC-EEEEECCCCCCCCccccEEEEcCCCC--cEEECCC---CCCCC
Confidence 699999999987 4999999988 778999999999999 9999876 77776
No 66
>PF13964 Kelch_6: Kelch motif
Probab=98.67 E-value=4.2e-08 Score=76.22 Aligned_cols=50 Identities=30% Similarity=0.571 Sum_probs=44.3
Q ss_pred cccccEEEEECCEEEEECccCCCCCccCcEEEEEccCCceEEEEEeecCCCCCcc
Q 003577 24 PRAAHAAAAVGTMVVFQGGIGPAGHSTDDLYVLDLTNDKFKWHRVVVQGQGPGPR 78 (810)
Q Consensus 24 ~R~~haa~~~~~~lyv~GG~~~~~~~~~dl~~lDl~t~~~~W~~v~~~g~~P~~R 78 (810)
||.+|++++++++|||+||.......++++|+||+.++ +|+++++ +|.||
T Consensus 1 pR~~~s~v~~~~~iyv~GG~~~~~~~~~~v~~yd~~t~--~W~~~~~---mp~pR 50 (50)
T PF13964_consen 1 PRYGHSAVVVGGKIYVFGGYDNSGKYSNDVERYDPETN--TWEQLPP---MPTPR 50 (50)
T ss_pred CCccCEEEEECCEEEEECCCCCCCCccccEEEEcCCCC--cEEECCC---CCCCC
Confidence 69999999999999999999875678999999999995 4999875 78776
No 67
>PF13415 Kelch_3: Galactose oxidase, central domain
Probab=98.66 E-value=4.7e-08 Score=75.60 Aligned_cols=48 Identities=33% Similarity=0.719 Sum_probs=41.5
Q ss_pred CCEEEEECccC-CCCCccCcEEEEEccCCceEEEEEeecCCCCCcccccEEEEE
Q 003577 34 GTMVVFQGGIG-PAGHSTDDLYVLDLTNDKFKWHRVVVQGQGPGPRYGHVMDLV 86 (810)
Q Consensus 34 ~~~lyv~GG~~-~~~~~~~dl~~lDl~t~~~~W~~v~~~g~~P~~R~~Hs~~~v 86 (810)
+++||||||.+ .....++|+|+||+.+ .+|+++ ++.|.+|++|+++++
T Consensus 1 g~~~~vfGG~~~~~~~~~nd~~~~~~~~--~~W~~~---~~~P~~R~~h~~~~i 49 (49)
T PF13415_consen 1 GNKLYVFGGYDDDGGTRLNDVWVFDLDT--NTWTRI---GDLPPPRSGHTATVI 49 (49)
T ss_pred CCEEEEECCcCCCCCCEecCEEEEECCC--CEEEEC---CCCCCCccceEEEEC
Confidence 57899999998 4567899999999998 569988 568999999999864
No 68
>PF13415 Kelch_3: Galactose oxidase, central domain
Probab=98.65 E-value=5.5e-08 Score=75.20 Aligned_cols=46 Identities=35% Similarity=0.619 Sum_probs=40.5
Q ss_pred cEEEEEccCC--CCCCCCcEEEEecCCCCcEEEEecCCCCCCCcccceEEEEe
Q 003577 89 RYLVSVSGND--GKRVLSDAWALDTAQKPYVWQRLNPEGDRPSARMYATASAR 139 (810)
Q Consensus 89 ~~l~VfGG~~--g~~~~ndv~~yd~~~~~~~W~~i~~~g~~P~~R~~hsa~~~ 139 (810)
+.+|||||.+ +...++|+|+||+.+. +|+++ ++.|.+|++|+++++
T Consensus 2 ~~~~vfGG~~~~~~~~~nd~~~~~~~~~--~W~~~---~~~P~~R~~h~~~~i 49 (49)
T PF13415_consen 2 NKLYVFGGYDDDGGTRLNDVWVFDLDTN--TWTRI---GDLPPPRSGHTATVI 49 (49)
T ss_pred CEEEEECCcCCCCCCEecCEEEEECCCC--EEEEC---CCCCCCccceEEEEC
Confidence 4699999998 6678999999999888 99998 568999999999863
No 69
>PLN02772 guanylate kinase
Probab=98.64 E-value=1.4e-07 Score=103.23 Aligned_cols=89 Identities=15% Similarity=0.121 Sum_probs=76.2
Q ss_pred CCCCcccccEEEEECCcEEEEEccCCCCC-CCCcEEEEecCCCCcEEEEecCCCCCCCcccceEEEEeCCcEEEEEcccC
Q 003577 73 QGPGPRYGHVMDLVSQRYLVSVSGNDGKR-VLSDAWALDTAQKPYVWQRLNPEGDRPSARMYATASARSDGMFLLCGGRD 151 (810)
Q Consensus 73 ~~P~~R~~Hs~~~v~~~~l~VfGG~~g~~-~~ndv~~yd~~~~~~~W~~i~~~g~~P~~R~~hsa~~~~~~~l~v~GG~~ 151 (810)
--+.++.+|+++.++++ +|||||.+... ..+++|+||+.+. +|..+.-.|..|.||.+|+++++++..|+|+++..
T Consensus 20 ~~~~~~~~~tav~igdk-~yv~GG~~d~~~~~~~v~i~D~~t~--~W~~P~V~G~~P~~r~GhSa~v~~~~rilv~~~~~ 96 (398)
T PLN02772 20 FGVKPKNRETSVTIGDK-TYVIGGNHEGNTLSIGVQILDKITN--NWVSPIVLGTGPKPCKGYSAVVLNKDRILVIKKGS 96 (398)
T ss_pred ccCCCCCcceeEEECCE-EEEEcccCCCccccceEEEEECCCC--cEecccccCCCCCCCCcceEEEECCceEEEEeCCC
Confidence 34668999999999976 99999987665 7889999999888 99999999999999999999999998899998765
Q ss_pred CCCCccccEEEEEeCC
Q 003577 152 ASGAPLADAYGLLMHR 167 (810)
Q Consensus 152 ~~g~~l~d~~~l~~~~ 167 (810)
.. -.++|+|...+
T Consensus 97 ~~---~~~~w~l~~~t 109 (398)
T PLN02772 97 AP---DDSIWFLEVDT 109 (398)
T ss_pred CC---ccceEEEEcCC
Confidence 44 37889998753
No 70
>PRK09453 phosphodiesterase; Provisional
Probab=98.60 E-value=1.5e-07 Score=94.48 Aligned_cols=68 Identities=19% Similarity=0.311 Sum_probs=52.3
Q ss_pred CeEEEecCCCCHHHHHHHHHHhCCCCCCCCcceeeEEEeccccCCCCC--------hHHHHHHHHHHhhcCCCcEEEecC
Q 003577 507 PVKVFGDLHGQFGDLMRLFDEYGFPSTAGDITYIDYLFLGDYVDRGQH--------SLETITLLLALKIEYPENVHLIRG 578 (810)
Q Consensus 507 pi~vvGDiHG~~~~L~~~l~~~~~~~~~~~~~~~~~vfLGDyVDRG~~--------s~evl~ll~~lk~~~p~~v~llrG 578 (810)
++.|++|+||++..+.++++.+.....+ .++++||++|+|+. ..+++.+|..+ ...+++++|
T Consensus 2 ri~viSD~Hg~~~~~~~~l~~~~~~~~d------~ii~lGDi~~~~~~~~~~~~~~~~~~~~~l~~~----~~~v~~V~G 71 (182)
T PRK09453 2 KLMFASDTHGSLPATEKALELFAQSGAD------WLVHLGDVLYHGPRNPLPEGYAPKKVAELLNAY----ADKIIAVRG 71 (182)
T ss_pred eEEEEEeccCCHHHHHHHHHHHHhcCCC------EEEEcccccccCcCCCCccccCHHHHHHHHHhc----CCceEEEcc
Confidence 4899999999999999998876432222 79999999999873 45666666543 246999999
Q ss_pred Cccccc
Q 003577 579 NHEAAD 584 (810)
Q Consensus 579 NHE~~~ 584 (810)
|||...
T Consensus 72 NhD~~~ 77 (182)
T PRK09453 72 NCDSEV 77 (182)
T ss_pred CCcchh
Confidence 999743
No 71
>PF12850 Metallophos_2: Calcineurin-like phosphoesterase superfamily domain; InterPro: IPR024654 Domains in this entry are members of the calcineurin-like phosphoesterase domain superfamily [].; PDB: 2GJU_A 1Z2W_A 1Z2X_B 3PSO_B 3PSN_B 1W24_A 2R17_B 3QFN_B 3QFO_A 3QFM_A ....
Probab=98.57 E-value=1.3e-06 Score=84.83 Aligned_cols=60 Identities=30% Similarity=0.472 Sum_probs=43.8
Q ss_pred CeEEEecCCCCHHHHHHHHHHhCCCCCCCCcceeeEEEeccccCCCCChHHHHHHHHHHhhcCCCcEEEecCCccccc
Q 003577 507 PVKVFGDLHGQFGDLMRLFDEYGFPSTAGDITYIDYLFLGDYVDRGQHSLETITLLLALKIEYPENVHLIRGNHEAAD 584 (810)
Q Consensus 507 pi~vvGDiHG~~~~L~~~l~~~~~~~~~~~~~~~~~vfLGDyVDRG~~s~evl~ll~~lk~~~p~~v~llrGNHE~~~ 584 (810)
++.++||+|++...+.++++.+.- .+ .++++||++|+ .+++..+..+ .+++++||||...
T Consensus 2 ki~~~sD~H~~~~~~~~~~~~~~~--~d------~vi~~GDi~~~----~~~~~~~~~~------~~~~v~GNHD~~~ 61 (156)
T PF12850_consen 2 KIAVISDLHGNLDALEAVLEYINE--PD------FVIILGDIFDP----EEVLELLRDI------PVYVVRGNHDNWA 61 (156)
T ss_dssp EEEEEE--TTTHHHHHHHHHHHTT--ES------EEEEES-SCSH----HHHHHHHHHH------EEEEE--CCHSTH
T ss_pred EEEEEeCCCCChhHHHHHHHHhcC--CC------EEEECCCchhH----HHHHHHHhcC------CEEEEeCCccccc
Confidence 488999999999999999999821 11 68889999993 7777777554 6999999999644
No 72
>PF13418 Kelch_4: Galactose oxidase, central domain; PDB: 2UVK_B.
Probab=98.57 E-value=5.3e-08 Score=75.26 Aligned_cols=44 Identities=32% Similarity=0.688 Sum_probs=29.6
Q ss_pred cccccEEEEECCcEEEEEccCCCC-CCCCcEEEEecCCCCcEEEEec
Q 003577 77 PRYGHVMDLVSQRYLVSVSGNDGK-RVLSDAWALDTAQKPYVWQRLN 122 (810)
Q Consensus 77 ~R~~Hs~~~v~~~~l~VfGG~~g~-~~~ndv~~yd~~~~~~~W~~i~ 122 (810)
||++|+++.++++.+|||||.+.. ..++|+|+||++++ +|+++.
T Consensus 1 pR~~h~~~~~~~~~i~v~GG~~~~~~~~~d~~~~d~~~~--~W~~~~ 45 (49)
T PF13418_consen 1 PRYGHSAVSIGDNSIYVFGGRDSSGSPLNDLWIFDIETN--TWTRLP 45 (49)
T ss_dssp --BS-EEEEE-TTEEEEE--EEE-TEE---EEEEETTTT--EEEE--
T ss_pred CcceEEEEEEeCCeEEEECCCCCCCcccCCEEEEECCCC--EEEECC
Confidence 699999999976789999999876 59999999999999 999983
No 73
>PF07646 Kelch_2: Kelch motif; InterPro: IPR011498 Kelch is a 50-residue motif, named after the Drosophila mutant in which it was first identified []. This sequence motif represents one beta-sheet blade, and several of these repeats can associate to form a beta-propeller. For instance, the motif appears 6 times in Drosophila egg-chamber regulatory protein, creating a 6-bladed beta-propeller. The motif is also found in mouse protein MIPP [] and in a number of poxviruses. In addition, kelch repeats have been recognised in alpha- and beta-scruin [, ], and in galactose oxidase from the fungus Dactylium dendroides [, ]. The structure of galactose oxidase reveals that the repeated sequence corresponds to a 4-stranded anti-parallel beta-sheet motif that forms the repeat unit in a super-barrel structural fold []. The known functions of kelch-containing proteins are diverse: scruin is an actin cross-linking protein; galactose oxidase catalyses the oxidation of the hydroxyl group at the C6 position in D-galactose; neuraminidase hydrolyses sialic acid residues from glycoproteins; and kelch may have a cytoskeletal function, as it is localised to the actin-rich ring canals that connect the 15 nurse cells to the developing oocyte in Drosophila []. Nevertheless, based on the location of the kelch pattern in the catalytic unit in galactose oxidase, functionally important residues have been predicted in glyoxal oxidase []. This entry represents a type of kelch sequence motif that comprises one beta-sheet blade.; GO: 0005515 protein binding
Probab=98.51 E-value=2.7e-07 Score=71.32 Aligned_cols=48 Identities=29% Similarity=0.500 Sum_probs=40.4
Q ss_pred cccceEEEEECCEEEEEcccCCCCCCCCCCceEEEEECCCCcEEEcccC
Q 003577 183 PRYQHAAVFVGARLHVTGGALRGGRAIEGEAAVAVLDTAAGVWLDRNGL 231 (810)
Q Consensus 183 ~R~~hsav~~~~~l~V~GG~~~~~~~~~~~~~l~~yD~~t~~W~~v~~~ 231 (810)
||++|++++++++|||+||. .........+++++||+++.+|+.++.+
T Consensus 1 ~r~~hs~~~~~~kiyv~GG~-~~~~~~~~~~~v~~~d~~t~~W~~~~~~ 48 (49)
T PF07646_consen 1 PRYGHSAVVLDGKIYVFGGY-GTDNGGSSSNDVWVFDTETNQWTELSPM 48 (49)
T ss_pred CccceEEEEECCEEEEECCc-ccCCCCcccceeEEEECCCCEEeecCCC
Confidence 69999999999999999999 2222345678899999999999998764
No 74
>cd00841 MPP_YfcE Escherichia coli YfcE and related proteins, metallophosphatase domain. YfcE is a manganase-dependent metallophosphatase, found in bacteria and archaea, that cleaves bis-p-nitrophenyl phosphate, thymidine 5'-monophosphate-p-nitrophenyl ester, and p-nitrophenyl phosphorylcholine, but is unable to hydrolyze 2',3 ' or 3',5' cyclic nucleic phosphodiesters, and various phosphomonoesters, including p-nitrophenyl phosphate. This family also includes the Bacilus subtilis YsnB and Methanococcus jannaschii MJ0936 proteins. This domain family belongs to the metallophosphatase (MPP) superfamily. MPPs are functionally diverse, but all share a conserved domain with an active site consisting of two metal ions (usually manganese, iron, or zinc) coordinated with octahedral geometry by a cage of histidine, aspartate, and asparagine residues. The MPP superfamily includes: Mre11/SbcD-like exonucleases, Dbr1-like RNA lariat debranching enzymes, YfcE-like phosphodiesterases, purple acid ph
Probab=98.50 E-value=3.8e-07 Score=88.81 Aligned_cols=59 Identities=24% Similarity=0.360 Sum_probs=47.6
Q ss_pred CeEEEecCCCCHHHHHHHHHHhCCCCCCCCcceeeEEEeccccCCCCChHHHHHHHHHHhhcCCCcEEEecCCcccc
Q 003577 507 PVKVFGDLHGQFGDLMRLFDEYGFPSTAGDITYIDYLFLGDYVDRGQHSLETITLLLALKIEYPENVHLIRGNHEAA 583 (810)
Q Consensus 507 pi~vvGDiHG~~~~L~~~l~~~~~~~~~~~~~~~~~vfLGDyVDRG~~s~evl~ll~~lk~~~p~~v~llrGNHE~~ 583 (810)
++.+++|+||+...+.++++.+.. .+ .++++||+++++.... ++ ....+++++||||..
T Consensus 1 ~i~~isD~H~~~~~~~~~~~~~~~--~d------~ii~~GD~~~~~~~~~--------~~--~~~~~~~V~GNhD~~ 59 (155)
T cd00841 1 KIGVISDTHGSLELLEKALELFGD--VD------LIIHAGDVLYPGPLNE--------LE--LKAPVIAVRGNCDGE 59 (155)
T ss_pred CEEEEecCCCCHHHHHHHHHHhcC--CC------EEEECCccccccccch--------hh--cCCcEEEEeCCCCCc
Confidence 478999999999999999998754 22 7999999999998765 11 224699999999974
No 75
>PF13854 Kelch_5: Kelch motif
Probab=98.44 E-value=3.5e-07 Score=68.20 Aligned_cols=39 Identities=31% Similarity=0.611 Sum_probs=35.5
Q ss_pred CCcceeeEEEEeCCEEEEEcCCCC--CCCCCcEEEEeCCCC
Q 003577 250 LMRRCRHASASIGVRIYIYGGLKG--DILLDDFLVAENSPF 288 (810)
Q Consensus 250 p~~R~~hs~~~~~~~i~I~GG~~~--~~~~~Dl~~ld~~~~ 288 (810)
|.+|.+|+++.++++||||||..+ ...++|+|+||+.++
T Consensus 2 P~~R~~hs~~~~~~~iyi~GG~~~~~~~~~~d~~~l~l~sf 42 (42)
T PF13854_consen 2 PSPRYGHSAVVVGNNIYIFGGYSGNNNSYSNDLYVLDLPSF 42 (42)
T ss_pred CCCccceEEEEECCEEEEEcCccCCCCCEECcEEEEECCCC
Confidence 679999999999999999999984 688999999999764
No 76
>PF13854 Kelch_5: Kelch motif
Probab=98.44 E-value=3.3e-07 Score=68.34 Aligned_cols=40 Identities=43% Similarity=0.690 Sum_probs=36.4
Q ss_pred CCccccccEEEEECCEEEEECccCC-CCCccCcEEEEEccC
Q 003577 21 PPSPRAAHAAAAVGTMVVFQGGIGP-AGHSTDDLYVLDLTN 60 (810)
Q Consensus 21 ~P~~R~~haa~~~~~~lyv~GG~~~-~~~~~~dl~~lDl~t 60 (810)
+|++|.+|+++.+++.|||+||... ....++|+|+||+.+
T Consensus 1 ~P~~R~~hs~~~~~~~iyi~GG~~~~~~~~~~d~~~l~l~s 41 (42)
T PF13854_consen 1 IPSPRYGHSAVVVGNNIYIFGGYSGNNNSYSNDLYVLDLPS 41 (42)
T ss_pred CCCCccceEEEEECCEEEEEcCccCCCCCEECcEEEEECCC
Confidence 4889999999999999999999984 667899999999976
No 77
>cd07379 MPP_239FB Homo sapiens 239FB and related proteins, metallophosphatase domain. 239FB (Fetal brain protein 239) is thought to play a role in central nervous system development, but its specific role in unknown. 239FB is expressed predominantly in human fetal brain from a gene located in the chromosome 11p13 region associated with the mental retardation component of the WAGR (Wilms tumor, Aniridia, Genitourinary anomalies, Mental retardation) syndrome. Orthologous brp-like (brain protein 239-like) proteins have been identified in the invertebrate amphioxus group and in vertebrates. 239FB belongs to the metallophosphatase (MPP) superfamily. MPPs are functionally diverse, but all share a conserved domain with an active site consisting of two metal ions (usually manganese, iron, or zinc) coordinated with octahedral geometry by a cage of histidine, aspartate, and asparagine residues. The MPP superfamily includes: Mre11/SbcD-like exonucleases, Dbr1-like RNA lariat debranching enzyme
Probab=98.44 E-value=9.9e-07 Score=83.91 Aligned_cols=118 Identities=22% Similarity=0.286 Sum_probs=76.4
Q ss_pred CeEEEecCCCCHHHHHHHHHHhCCCCCCCCcceeeEEEeccccCCCCChH--HHHHHHHHHhhcCCCcEEEecCCccccc
Q 003577 507 PVKVFGDLHGQFGDLMRLFDEYGFPSTAGDITYIDYLFLGDYVDRGQHSL--ETITLLLALKIEYPENVHLIRGNHEAAD 584 (810)
Q Consensus 507 pi~vvGDiHG~~~~L~~~l~~~~~~~~~~~~~~~~~vfLGDyVDRG~~s~--evl~ll~~lk~~~p~~v~llrGNHE~~~ 584 (810)
++.+++|+||++. .+ .....+ -++++||+++++...- +.+.++..++ .| .++++.||||...
T Consensus 1 ~i~~isD~H~~~~----~~---~~~~~D------~vi~~GD~~~~~~~~~~~~~~~~l~~~~--~~-~~~~v~GNHD~~~ 64 (135)
T cd07379 1 RFVCISDTHSRHR----TI---SIPDGD------VLIHAGDLTERGTLEELQKFLDWLKSLP--HP-HKIVIAGNHDLTL 64 (135)
T ss_pred CEEEEeCCCCCCC----cC---cCCCCC------EEEECCCCCCCCCHHHHHHHHHHHHhCC--CC-eEEEEECCCCCcC
Confidence 3789999999987 11 111111 6888999999986532 2444444332 22 3678999999531
Q ss_pred hhhccCChHHHHHhhCCCCccccccccccccccCceeEEEcCcEEEecCCcCCcccchhhhhcccCCcccCCCchhhhhh
Q 003577 585 INALFGFRLECIERMGENDGIWAWTRFNQLFNCLPLAALIEKKIICMHGGIGRSIHSVEQIEKLERPITMDAGSIILMDL 664 (810)
Q Consensus 585 ~~~~~gf~~e~~~~~~~~~~~~~~~~~~~~f~~lPla~~i~~~il~vHgGi~~~~~~~~~i~~~~rp~~~~~~~~~~~dl 664 (810)
. .-+.+++++||.+.... +.
T Consensus 65 ~-------------------------------------~~~~~ilv~H~~p~~~~-----------------------~~ 84 (135)
T cd07379 65 D-------------------------------------PEDTDILVTHGPPYGHL-----------------------DL 84 (135)
T ss_pred C-------------------------------------CCCCEEEEECCCCCcCc-----------------------cc
Confidence 1 11346899998542210 00
Q ss_pred ccCCCCCCCCCCCCCcCCCCCceeeeCHHHHHHHHHhcCCcEEEEeccccccceE
Q 003577 665 LWSDPTENDSIEGLRPNARGPGLVTFGPDRVSDFCKRNKLQLIIRAHECVMDGFE 719 (810)
Q Consensus 665 lWsdP~~~~~~~~~~~~~rg~~~~~fg~~~~~~fl~~~~l~~iiR~H~~~~~G~~ 719 (810)
++ + . ...|.+.+.+++++.+.+++|-||.-.+.|++
T Consensus 85 ~~--~----------------~-~~~g~~~~~~~~~~~~~~~~i~GH~H~~~~~~ 120 (135)
T cd07379 85 VS--S----------------G-QRVGCEELLNRVQRVRPKLHVFGHIHEGYGAE 120 (135)
T ss_pred cc--c----------------C-cccCCHHHHHHHHHHCCcEEEEcCcCCcCcee
Confidence 00 0 0 23577888999999999999999999888876
No 78
>PF07646 Kelch_2: Kelch motif; InterPro: IPR011498 Kelch is a 50-residue motif, named after the Drosophila mutant in which it was first identified []. This sequence motif represents one beta-sheet blade, and several of these repeats can associate to form a beta-propeller. For instance, the motif appears 6 times in Drosophila egg-chamber regulatory protein, creating a 6-bladed beta-propeller. The motif is also found in mouse protein MIPP [] and in a number of poxviruses. In addition, kelch repeats have been recognised in alpha- and beta-scruin [, ], and in galactose oxidase from the fungus Dactylium dendroides [, ]. The structure of galactose oxidase reveals that the repeated sequence corresponds to a 4-stranded anti-parallel beta-sheet motif that forms the repeat unit in a super-barrel structural fold []. The known functions of kelch-containing proteins are diverse: scruin is an actin cross-linking protein; galactose oxidase catalyses the oxidation of the hydroxyl group at the C6 position in D-galactose; neuraminidase hydrolyses sialic acid residues from glycoproteins; and kelch may have a cytoskeletal function, as it is localised to the actin-rich ring canals that connect the 15 nurse cells to the developing oocyte in Drosophila []. Nevertheless, based on the location of the kelch pattern in the catalytic unit in galactose oxidase, functionally important residues have been predicted in glyoxal oxidase []. This entry represents a type of kelch sequence motif that comprises one beta-sheet blade.; GO: 0005515 protein binding
Probab=98.40 E-value=6.5e-07 Score=69.20 Aligned_cols=45 Identities=31% Similarity=0.728 Sum_probs=39.1
Q ss_pred cccccEEEEECCcEEEEEccC---CCCCCCCcEEEEecCCCCcEEEEecCC
Q 003577 77 PRYGHVMDLVSQRYLVSVSGN---DGKRVLSDAWALDTAQKPYVWQRLNPE 124 (810)
Q Consensus 77 ~R~~Hs~~~v~~~~l~VfGG~---~g~~~~ndv~~yd~~~~~~~W~~i~~~ 124 (810)
||++|++++++++ ||||||+ ......+|+|+||+++. +|+.+++.
T Consensus 1 ~r~~hs~~~~~~k-iyv~GG~~~~~~~~~~~~v~~~d~~t~--~W~~~~~~ 48 (49)
T PF07646_consen 1 PRYGHSAVVLDGK-IYVFGGYGTDNGGSSSNDVWVFDTETN--QWTELSPM 48 (49)
T ss_pred CccceEEEEECCE-EEEECCcccCCCCcccceeEEEECCCC--EEeecCCC
Confidence 6999999988875 9999999 55567899999999888 99998763
No 79
>PF13418 Kelch_4: Galactose oxidase, central domain; PDB: 2UVK_B.
Probab=98.40 E-value=3.2e-07 Score=70.85 Aligned_cols=44 Identities=30% Similarity=0.730 Sum_probs=29.3
Q ss_pred cccccEEEEEC-CEEEEECccCCCCCccCcEEEEEccCCceEEEEEe
Q 003577 24 PRAAHAAAAVG-TMVVFQGGIGPAGHSTDDLYVLDLTNDKFKWHRVV 69 (810)
Q Consensus 24 ~R~~haa~~~~-~~lyv~GG~~~~~~~~~dl~~lDl~t~~~~W~~v~ 69 (810)
||.+|+++.++ +.||||||....+..++|+|+||+.++ +|+++.
T Consensus 1 pR~~h~~~~~~~~~i~v~GG~~~~~~~~~d~~~~d~~~~--~W~~~~ 45 (49)
T PF13418_consen 1 PRYGHSAVSIGDNSIYVFGGRDSSGSPLNDLWIFDIETN--TWTRLP 45 (49)
T ss_dssp --BS-EEEEE-TTEEEEE--EEE-TEE---EEEEETTTT--EEEE--
T ss_pred CcceEEEEEEeCCeEEEECCCCCCCcccCCEEEEECCCC--EEEECC
Confidence 69999999995 899999999877679999999999995 599983
No 80
>TIGR00040 yfcE phosphoesterase, MJ0936 family. Members of this largely uncharacterized family share a motif approximating DXH(X25)GDXXD(X25)GNHD as found in several phosphoesterases, including the nucleases SbcD and Mre11, and a family of uncharacterized archaeal putative phosphoesterases described by TIGR00024. In this family, the His residue in GNHD portion of the motif is not conserved. The member MJ0936, one of two from Methanococcus jannaschii, was shown (PubMed:15128743) to act on model phosphodiesterase substrates; a divalent cation was required.
Probab=98.39 E-value=7.1e-06 Score=80.25 Aligned_cols=61 Identities=20% Similarity=0.281 Sum_probs=45.8
Q ss_pred CeEEEecCCCCHHHHHHHHHHhCCC-CCCCCcceeeEEEeccccCCCCChHHHHHHHHHHhhcCCCcEEEecCCccc
Q 003577 507 PVKVFGDLHGQFGDLMRLFDEYGFP-STAGDITYIDYLFLGDYVDRGQHSLETITLLLALKIEYPENVHLIRGNHEA 582 (810)
Q Consensus 507 pi~vvGDiHG~~~~L~~~l~~~~~~-~~~~~~~~~~~vfLGDyVDRG~~s~evl~ll~~lk~~~p~~v~llrGNHE~ 582 (810)
++.|++|+||++..+..+++..... ..+ .++++||++ +.+++.+|..+. ..++.++||||.
T Consensus 2 ~i~viSD~H~~~~~~~~~~~~~~~~~~~d------~ii~~GD~~-----~~~~~~~l~~~~----~~~~~V~GN~D~ 63 (158)
T TIGR00040 2 KILVISDTHGPLRATELPVELFNLESNVD------LVIHAGDLT-----SPFVLKEFEDLA----AKVIAVRGNNDG 63 (158)
T ss_pred EEEEEecccCCcchhHhHHHHHhhccCCC------EEEEcCCCC-----CHHHHHHHHHhC----CceEEEccCCCc
Confidence 4889999999998777666655433 222 688999999 467777776542 259999999997
No 81
>cd07397 MPP_DevT Myxococcus xanthus DevT and related proteins, metallophosphatase domain. DevT is a component in the C-signal response pathway in Myxococcus xanthus that stimulates the developmentally regulated expression of the FruA response regulator protein and is required for methylation of FrzCD during fruiting body formation. DevT mutants having an in-frame deletion in the devT gene, display delayed aggregation and a cell autonomous sporulation defect. DevT belongs to the metallophosphatase (MPP) superfamily. MPPs are functionally diverse, but all share a conserved domain with an active site consisting of two metal ions (usually manganese, iron, or zinc) coordinated with octahedral geometry by a cage of histidine, aspartate, and asparagine residues. The MPP superfamily includes: Mre11/SbcD-like exonucleases, Dbr1-like RNA lariat debranching enzymes, YfcE-like phosphodiesterases, purple acid phosphatases (PAPs), YbbF-like UDP-2,3-diacylglucosamine hydrolases, and acid sphingomy
Probab=98.37 E-value=1.9e-06 Score=89.03 Aligned_cols=63 Identities=27% Similarity=0.420 Sum_probs=44.8
Q ss_pred CeEEEecCCCCHHHHH-HHHHHhCCCCCCCCcceeeEEEeccccCCCCChHHHHHHHHHHhhcCCCcEEEecCCccccch
Q 003577 507 PVKVFGDLHGQFGDLM-RLFDEYGFPSTAGDITYIDYLFLGDYVDRGQHSLETITLLLALKIEYPENVHLIRGNHEAADI 585 (810)
Q Consensus 507 pi~vvGDiHG~~~~L~-~~l~~~~~~~~~~~~~~~~~vfLGDyVDRG~~s~evl~ll~~lk~~~p~~v~llrGNHE~~~~ 585 (810)
+|.++|||||++.... +.++..+ + + .+||+||+++. +.+++..|..+ +..++.++||||....
T Consensus 2 rIa~isDiHg~~~~~~~~~l~~~~--p-D------~Vl~~GDi~~~---~~~~~~~l~~l----~~p~~~V~GNHD~~~~ 65 (238)
T cd07397 2 RIAIVGDVHGQWDLEDIKALHLLQ--P-D------LVLFVGDFGNE---SVQLVRAISSL----PLPKAVILGNHDAWYD 65 (238)
T ss_pred EEEEEecCCCCchHHHHHHHhccC--C-C------EEEECCCCCcC---hHHHHHHHHhC----CCCeEEEcCCCccccc
Confidence 4899999999987642 3444332 2 1 69999999864 56777766554 2458999999998653
No 82
>cd07388 MPP_Tt1561 Thermus thermophilus Tt1561 and related proteins, metallophosphatase domain. This family includes bacterial proteins related to Tt1561 (also known as Aq1956 in Aquifex aeolicus), an uncharacterized Thermus thermophilus protein. The conserved domain present in members of this family belongs to the metallophosphatase (MPP) superfamily. MPPs are functionally diverse, but all share a conserved domain with an active site consisting of two metal ions (usually manganese, iron, or zinc) coordinated with octahedral geometry by a cage of histidine, aspartate, and asparagine residues. The MPP superfamily includes: Mre11/SbcD-like exonucleases, Dbr1-like RNA lariat debranching enzymes, YfcE-like phosphodiesterases, purple acid phosphatases (PAPs), YbbF-like UDP-2,3-diacylglucosamine hydrolases, and acid sphingomyelinases (ASMases). The conserved domain is a double beta-sheet sandwich with a di-metal active site made up of residues located at the C-terminal side of the sheets,
Probab=98.37 E-value=3.6e-06 Score=86.72 Aligned_cols=70 Identities=13% Similarity=0.166 Sum_probs=55.0
Q ss_pred CeEEEecCCCCHHHHHHHHHHhCCCCCCCCcceeeEEEeccccCCCCChHHHHHHHHHHhhcCCCcEEEecCCcccc
Q 003577 507 PVKVFGDLHGQFGDLMRLFDEYGFPSTAGDITYIDYLFLGDYVDRGQHSLETITLLLALKIEYPENVHLIRGNHEAA 583 (810)
Q Consensus 507 pi~vvGDiHG~~~~L~~~l~~~~~~~~~~~~~~~~~vfLGDyVDRG~~s~evl~ll~~lk~~~p~~v~llrGNHE~~ 583 (810)
++.+++||||++..|.++++.......+ .+|++||++++|+..-++..++..|... +..+++++||||..
T Consensus 6 kIl~iSDiHgn~~~le~l~~~~~~~~~D------~vv~~GDl~~~g~~~~~~~~~l~~l~~l-~~pv~~V~GNhD~~ 75 (224)
T cd07388 6 YVLATSNPKGDLEALEKLVGLAPETGAD------AIVLIGNLLPKAAKSEDYAAFFRILGEA-HLPTFYVPGPQDAP 75 (224)
T ss_pred EEEEEEecCCCHHHHHHHHHHHhhcCCC------EEEECCCCCCCCCCHHHHHHHHHHHHhc-CCceEEEcCCCChH
Confidence 4899999999999999999876322222 6899999999997777777777666432 34689999999975
No 83
>PF01344 Kelch_1: Kelch motif; InterPro: IPR006652 Kelch is a 50-residue motif, named after the Drosophila mutant in which it was first identified []. This sequence motif represents one beta-sheet blade, and several of these repeats can associate to form a beta-propeller. For instance, the motif appears 6 times in Drosophila egg-chamber regulatory protein, creating a 6-bladed beta-propeller. The motif is also found in mouse protein MIPP [] and in a number of poxviruses. In addition, kelch repeats have been recognised in alpha- and beta-scruin [, ], and in galactose oxidase from the fungus Dactylium dendroides [, ]. The structure of galactose oxidase reveals that the repeated sequence corresponds to a 4-stranded anti-parallel beta-sheet motif that forms the repeat unit in a super-barrel structural fold []. The known functions of kelch-containing proteins are diverse: scruin is an actin cross-linking protein; galactose oxidase catalyses the oxidation of the hydroxyl group at the C6 position in D-galactose; neuraminidase hydrolyses sialic acid residues from glycoproteins; and kelch may have a cytoskeletal function, as it is localised to the actin-rich ring canals that connect the 15 nurse cells to the developing oocyte in Drosophila []. Nevertheless, based on the location of the kelch pattern in the catalytic unit in galactose oxidase, functionally important residues have been predicted in glyoxal oxidase []. This entry represents a type of kelch sequence motif that comprises one beta-sheet blade.; GO: 0005515 protein binding; PDB: 2XN4_A 2WOZ_A 3II7_A 4ASC_A 1U6D_X 1ZGK_A 2FLU_X 2VPJ_A 2DYH_A 1X2R_A ....
Probab=98.27 E-value=1.5e-06 Score=66.43 Aligned_cols=45 Identities=29% Similarity=0.541 Sum_probs=40.4
Q ss_pred cccccEEEEECCEEEEECccCCCCCccCcEEEEEccCCceEEEEEee
Q 003577 24 PRAAHAAAAVGTMVVFQGGIGPAGHSTDDLYVLDLTNDKFKWHRVVV 70 (810)
Q Consensus 24 ~R~~haa~~~~~~lyv~GG~~~~~~~~~dl~~lDl~t~~~~W~~v~~ 70 (810)
||.+|+++.+++.||++||.......++++++||+.+++ |..+++
T Consensus 1 pR~~~~~~~~~~~iyv~GG~~~~~~~~~~v~~yd~~~~~--W~~~~~ 45 (47)
T PF01344_consen 1 PRSGHAAVVVGNKIYVIGGYDGNNQPTNSVEVYDPETNT--WEELPP 45 (47)
T ss_dssp -BBSEEEEEETTEEEEEEEBESTSSBEEEEEEEETTTTE--EEEEEE
T ss_pred CCccCEEEEECCEEEEEeeecccCceeeeEEEEeCCCCE--EEEcCC
Confidence 699999999999999999998767789999999999955 999875
No 84
>PF03089 RAG2: Recombination activating protein 2; InterPro: IPR004321 The variable portion of the genes encoding immunoglobulins and T cell receptors are assembled from component V, D, and J DNA segments by a site-specific recombination reaction termed V(D)J recombination. V(D)J recombination is targeted to specific sites on the chromosome by recombination signal sequences (RSSs) that flank antigen receptor gene segments. The RSS consists of a conserved heptamer (consensus, 5'-CACAGTG-3') and nonamer (consensus, 5'-ACAAAAACC-3') separated by a spacer of either 12 or 23 bp. Efficient recombination occurs between a 12-RSS and a 23-RSS, a restriction known as the 12/23 rule. V(D)J recombination can be divided into two phases, DNA cleavage and DNA joining. DNA cleavage requires two lymphocyte-specific factors, the products of the recombination activating genes, RAG1 and RAG2, which together recognise the RSSs and create double strand breaks at the RSS-coding segment junctions []. RAG-mediated DNA cleavage occurs in a synaptic complex termed the paired complex, which is constituted from two distinct RSS-RAG complexes, a 12-SC and a 23-SC (where SC stands for signal complex). The DNA cleavage reaction involves two distinct enzymatic steps, initial nicking that creates a 3'-OH between a coding segment and its RSS, followed by hairpin formation in which the newly created 3'-OH attacks a phosphodiester bond on the opposite DNA strand. This generates a blunt, 5' phosphorylated signal end containing all of the RSS elements, and a covalently sealed hairpin coding end. The second phase of V(D)J recombination, in which broken DNA fragments are processed and joined, is less well characterised. Signal ends are typically joined precisely to form a signal joint, whereas joining of the coding ends requires the hairpin structure to be opened and typically involves nucleotide addition and deletion before formation of the coding joint. The factors involved in these processes include ubiquitously expressed proteins involved in the repair of DNA double strand breaks by nonhomologous end joining, terminal deoxynucleotidyl transferase, and Artemis protein. In addition to their critical roles in RSS recognition and DNA cleavage, the RAG proteins may perform two distinct types of functions in the postcleavage phase of V(D)J. A structural function has been inferred from the finding that, after DNA cleavage in vitro, the DNA ends remain associated with the RAG proteins in a "four end" complex known as the cleaved signal complex. After release of the coding ends in vitro, and after coding joint formation in vivo, the RAG proteins remain in a stable signal end complex (SEC) containing the two signal ends. These postcleavage complexes may serve as essential scaffolds for the second phase of the reaction, with the RAG proteins acting to organise the DNA processing and joining events. The second type of RAG protein-mediated postcleavage activity is the catalysis of phosphodiester bond hydrolysis and strand transfer reactions. The RAG proteins are capable of opening hairpin coding ends in vitro. The RAG proteins also show 3' flap endonuclease activity that may contribute to coding end processing/joining and can utilise the 3' OH group on the signal ends to attack hairpin coding ends (forming hybrid or open/shut joints) or virtually any DNA duplex (forming a transposition product).; GO: 0003677 DNA binding, 0006310 DNA recombination, 0005634 nucleus
Probab=98.25 E-value=2.5e-05 Score=80.20 Aligned_cols=146 Identities=20% Similarity=0.204 Sum_probs=99.5
Q ss_pred CCCcccceEEEEeC--C---cEEEEEcccCCCCCccccEEEEEeCCCC-------eEEEEeCCCCCCCcccceEEEEEC-
Q 003577 127 RPSARMYATASARS--D---GMFLLCGGRDASGAPLADAYGLLMHRNG-------QWEWTLAPGVAPSPRYQHAAVFVG- 193 (810)
Q Consensus 127 ~P~~R~~hsa~~~~--~---~~l~v~GG~~~~g~~l~d~~~l~~~~~~-------~W~~~~~~g~~P~~R~~hsav~~~- 193 (810)
+|+.|.-+.+.... + ..++|.||+..+.+-.+.+|.+.....+ +....+.-|..|.+||+|++-++.
T Consensus 19 LPPLR~PAv~~~~~~~~~~~~~YlIHGGrTPNNElS~~LY~ls~~s~~cNkK~tl~C~EKeLvGdvP~aRYGHt~~vV~S 98 (337)
T PF03089_consen 19 LPPLRCPAVCHLSDPSDGEPEQYLIHGGRTPNNELSSSLYILSVDSRGCNKKVTLCCQEKELVGDVPEARYGHTINVVHS 98 (337)
T ss_pred CCCCCCccEeeecCCCCCCeeeEEecCCcCCCcccccceEEEEeecCCCCceeEEEEecceecCCCCcccccceEEEEEE
Confidence 56666544333311 1 4789999999998877788888766543 345556679999999999987762
Q ss_pred ---CEEEEEcccCCCC----------CCCCCCceEEEEECCCCcEEEcccCccCCCCCCCCCCCCCCCCCCcceeeEEEE
Q 003577 194 ---ARLHVTGGALRGG----------RAIEGEAAVAVLDTAAGVWLDRNGLVTSSRTSKGHGEHDPSLELMRRCRHASAS 260 (810)
Q Consensus 194 ---~~l~V~GG~~~~~----------~~~~~~~~l~~yD~~t~~W~~v~~~~~~~~~~~~~~~~~~~~~p~~R~~hs~~~ 260 (810)
...++|||+.... ..++....++..|++-++++.-..... -....+|.+.+
T Consensus 99 rGKta~VlFGGRSY~P~~qRTTenWNsVvDC~P~VfLiDleFGC~tah~lpEl----------------~dG~SFHvsla 162 (337)
T PF03089_consen 99 RGKTACVLFGGRSYMPPGQRTTENWNSVVDCPPQVFLIDLEFGCCTAHTLPEL----------------QDGQSFHVSLA 162 (337)
T ss_pred CCcEEEEEECCcccCCccccchhhcceeccCCCeEEEEeccccccccccchhh----------------cCCeEEEEEEe
Confidence 2489999986422 124446678899998888765332200 12567799999
Q ss_pred eCCEEEEEcCCC--CCCCCCcEEEEeCCCC
Q 003577 261 IGVRIYIYGGLK--GDILLDDFLVAENSPF 288 (810)
Q Consensus 261 ~~~~i~I~GG~~--~~~~~~Dl~~ld~~~~ 288 (810)
-++.+|++||.. .+..--.+|++.++-.
T Consensus 163 r~D~VYilGGHsl~sd~Rpp~l~rlkVdLl 192 (337)
T PF03089_consen 163 RNDCVYILGGHSLESDSRPPRLYRLKVDLL 192 (337)
T ss_pred cCceEEEEccEEccCCCCCCcEEEEEEeec
Confidence 999999999943 3344556777766553
No 85
>cd00838 MPP_superfamily metallophosphatase superfamily, metallophosphatase domain. Metallophosphatases (MPPs), also known as metallophosphoesterases, phosphodiesterases (PDEs), binuclear metallophosphoesterases, and dimetal-containing phosphoesterases (DMPs), represent a diverse superfamily of enzymes with a conserved domain containing an active site consisting of two metal ions (usually manganese, iron, or zinc) coordinated with octahedral geometry by a cage of histidine, aspartate, and asparagine residues. This superfamily includes: the phosphoprotein phosphatases (PPPs), Mre11/SbcD-like exonucleases, Dbr1-like RNA lariat debranching enzymes, YfcE-like phosphodiesterases, purple acid phosphatases (PAPs), YbbF-like UDP-2,3-diacylglucosamine hydrolases, and acid sphingomyelinases (ASMases). The conserved domain is a double beta-sheet sandwich with a di-metal active site made up of residues located at the C-terminal side of the sheets. This domain is thought to allow for productive me
Probab=98.23 E-value=1.2e-05 Score=74.67 Aligned_cols=67 Identities=28% Similarity=0.384 Sum_probs=48.7
Q ss_pred EEEecCCCCHHHHHHHH--HHhCCCCCCCCcceeeEEEeccccCCCCChHHHHHHHHHHhhcCCCcEEEecCCcc
Q 003577 509 KVFGDLHGQFGDLMRLF--DEYGFPSTAGDITYIDYLFLGDYVDRGQHSLETITLLLALKIEYPENVHLIRGNHE 581 (810)
Q Consensus 509 ~vvGDiHG~~~~L~~~l--~~~~~~~~~~~~~~~~~vfLGDyVDRG~~s~evl~ll~~lk~~~p~~v~llrGNHE 581 (810)
+++||+|+......... ........+ .+|++||+++.+....+........+......++++.||||
T Consensus 1 ~~~gD~h~~~~~~~~~~~~~~~~~~~~~------~vi~~GD~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~GNHD 69 (131)
T cd00838 1 AVISDIHGNLEALEAVLEAALAAAEKPD------FVLVLGDLVGDGPDPEEVLAAALALLLLLGIPVYVVPGNHD 69 (131)
T ss_pred CeeecccCCccchHHHHHHHHhcccCCC------EEEECCcccCCCCCchHHHHHHHHHhhcCCCCEEEeCCCce
Confidence 47999999999888765 222111111 68889999999998877766544444455678999999999
No 86
>PF01344 Kelch_1: Kelch motif; InterPro: IPR006652 Kelch is a 50-residue motif, named after the Drosophila mutant in which it was first identified []. This sequence motif represents one beta-sheet blade, and several of these repeats can associate to form a beta-propeller. For instance, the motif appears 6 times in Drosophila egg-chamber regulatory protein, creating a 6-bladed beta-propeller. The motif is also found in mouse protein MIPP [] and in a number of poxviruses. In addition, kelch repeats have been recognised in alpha- and beta-scruin [, ], and in galactose oxidase from the fungus Dactylium dendroides [, ]. The structure of galactose oxidase reveals that the repeated sequence corresponds to a 4-stranded anti-parallel beta-sheet motif that forms the repeat unit in a super-barrel structural fold []. The known functions of kelch-containing proteins are diverse: scruin is an actin cross-linking protein; galactose oxidase catalyses the oxidation of the hydroxyl group at the C6 position in D-galactose; neuraminidase hydrolyses sialic acid residues from glycoproteins; and kelch may have a cytoskeletal function, as it is localised to the actin-rich ring canals that connect the 15 nurse cells to the developing oocyte in Drosophila []. Nevertheless, based on the location of the kelch pattern in the catalytic unit in galactose oxidase, functionally important residues have been predicted in glyoxal oxidase []. This entry represents a type of kelch sequence motif that comprises one beta-sheet blade.; GO: 0005515 protein binding; PDB: 2XN4_A 2WOZ_A 3II7_A 4ASC_A 1U6D_X 1ZGK_A 2FLU_X 2VPJ_A 2DYH_A 1X2R_A ....
Probab=98.22 E-value=1.9e-06 Score=65.82 Aligned_cols=46 Identities=33% Similarity=0.499 Sum_probs=39.7
Q ss_pred cccceEEEEECCEEEEEcccCCCCCCCCCCceEEEEECCCCcEEEcccC
Q 003577 183 PRYQHAAVFVGARLHVTGGALRGGRAIEGEAAVAVLDTAAGVWLDRNGL 231 (810)
Q Consensus 183 ~R~~hsav~~~~~l~V~GG~~~~~~~~~~~~~l~~yD~~t~~W~~v~~~ 231 (810)
||+.|+++.++++|||+||.... ....+++++||+++++|+.++++
T Consensus 1 pR~~~~~~~~~~~iyv~GG~~~~---~~~~~~v~~yd~~~~~W~~~~~m 46 (47)
T PF01344_consen 1 PRSGHAAVVVGNKIYVIGGYDGN---NQPTNSVEVYDPETNTWEELPPM 46 (47)
T ss_dssp -BBSEEEEEETTEEEEEEEBEST---SSBEEEEEEEETTTTEEEEEEEE
T ss_pred CCccCEEEEECCEEEEEeeeccc---CceeeeEEEEeCCCCEEEEcCCC
Confidence 68999999999999999999872 33567899999999999998765
No 87
>PF03089 RAG2: Recombination activating protein 2; InterPro: IPR004321 The variable portion of the genes encoding immunoglobulins and T cell receptors are assembled from component V, D, and J DNA segments by a site-specific recombination reaction termed V(D)J recombination. V(D)J recombination is targeted to specific sites on the chromosome by recombination signal sequences (RSSs) that flank antigen receptor gene segments. The RSS consists of a conserved heptamer (consensus, 5'-CACAGTG-3') and nonamer (consensus, 5'-ACAAAAACC-3') separated by a spacer of either 12 or 23 bp. Efficient recombination occurs between a 12-RSS and a 23-RSS, a restriction known as the 12/23 rule. V(D)J recombination can be divided into two phases, DNA cleavage and DNA joining. DNA cleavage requires two lymphocyte-specific factors, the products of the recombination activating genes, RAG1 and RAG2, which together recognise the RSSs and create double strand breaks at the RSS-coding segment junctions []. RAG-mediated DNA cleavage occurs in a synaptic complex termed the paired complex, which is constituted from two distinct RSS-RAG complexes, a 12-SC and a 23-SC (where SC stands for signal complex). The DNA cleavage reaction involves two distinct enzymatic steps, initial nicking that creates a 3'-OH between a coding segment and its RSS, followed by hairpin formation in which the newly created 3'-OH attacks a phosphodiester bond on the opposite DNA strand. This generates a blunt, 5' phosphorylated signal end containing all of the RSS elements, and a covalently sealed hairpin coding end. The second phase of V(D)J recombination, in which broken DNA fragments are processed and joined, is less well characterised. Signal ends are typically joined precisely to form a signal joint, whereas joining of the coding ends requires the hairpin structure to be opened and typically involves nucleotide addition and deletion before formation of the coding joint. The factors involved in these processes include ubiquitously expressed proteins involved in the repair of DNA double strand breaks by nonhomologous end joining, terminal deoxynucleotidyl transferase, and Artemis protein. In addition to their critical roles in RSS recognition and DNA cleavage, the RAG proteins may perform two distinct types of functions in the postcleavage phase of V(D)J. A structural function has been inferred from the finding that, after DNA cleavage in vitro, the DNA ends remain associated with the RAG proteins in a "four end" complex known as the cleaved signal complex. After release of the coding ends in vitro, and after coding joint formation in vivo, the RAG proteins remain in a stable signal end complex (SEC) containing the two signal ends. These postcleavage complexes may serve as essential scaffolds for the second phase of the reaction, with the RAG proteins acting to organise the DNA processing and joining events. The second type of RAG protein-mediated postcleavage activity is the catalysis of phosphodiester bond hydrolysis and strand transfer reactions. The RAG proteins are capable of opening hairpin coding ends in vitro. The RAG proteins also show 3' flap endonuclease activity that may contribute to coding end processing/joining and can utilise the 3' OH group on the signal ends to attack hairpin coding ends (forming hybrid or open/shut joints) or virtually any DNA duplex (forming a transposition product).; GO: 0003677 DNA binding, 0006310 DNA recombination, 0005634 nucleus
Probab=98.16 E-value=0.00037 Score=71.83 Aligned_cols=126 Identities=19% Similarity=0.344 Sum_probs=80.9
Q ss_pred EEEEECccCCCCCccCcEEEEEccC---Cc---eEEEEEeecCCCCCcccccEEEEE---CCcEEEEEccCCC----CC-
Q 003577 36 MVVFQGGIGPAGHSTDDLYVLDLTN---DK---FKWHRVVVQGQGPGPRYGHVMDLV---SQRYLVSVSGNDG----KR- 101 (810)
Q Consensus 36 ~lyv~GG~~~~~~~~~dl~~lDl~t---~~---~~W~~v~~~g~~P~~R~~Hs~~~v---~~~~l~VfGG~~g----~~- 101 (810)
..+|+||..++...++.+|++...+ |+ ....+-...|+.|.+||+|++.++ ++...++|||..- .+
T Consensus 40 ~YlIHGGrTPNNElS~~LY~ls~~s~~cNkK~tl~C~EKeLvGdvP~aRYGHt~~vV~SrGKta~VlFGGRSY~P~~qRT 119 (337)
T PF03089_consen 40 QYLIHGGRTPNNELSSSLYILSVDSRGCNKKVTLCCQEKELVGDVPEARYGHTINVVHSRGKTACVLFGGRSYMPPGQRT 119 (337)
T ss_pred eEEecCCcCCCcccccceEEEEeecCCCCceeEEEEecceecCCCCcccccceEEEEEECCcEEEEEECCcccCCccccc
Confidence 7889999999998999999997764 21 123333345899999999999887 5667899999631 11
Q ss_pred ---------CCCcEEEEecCCCCcEEEEecCCCCCCCcccceEEEEeCCcEEEEEcccCCC-CCccccEEEEEe
Q 003577 102 ---------VLSDAWALDTAQKPYVWQRLNPEGDRPSARMYATASARSDGMFLLCGGRDAS-GAPLADAYGLLM 165 (810)
Q Consensus 102 ---------~~ndv~~yd~~~~~~~W~~i~~~g~~P~~R~~hsa~~~~~~~l~v~GG~~~~-g~~l~d~~~l~~ 165 (810)
+.-.||.+|++-. -.+.- ...++-..-+.|-+.+.. ..+|+.||..-. ..+.-.++.+..
T Consensus 120 TenWNsVvDC~P~VfLiDleFG--C~tah-~lpEl~dG~SFHvslar~-D~VYilGGHsl~sd~Rpp~l~rlkV 189 (337)
T PF03089_consen 120 TENWNSVVDCPPQVFLIDLEFG--CCTAH-TLPELQDGQSFHVSLARN-DCVYILGGHSLESDSRPPRLYRLKV 189 (337)
T ss_pred hhhcceeccCCCeEEEEecccc--ccccc-cchhhcCCeEEEEEEecC-ceEEEEccEEccCCCCCCcEEEEEE
Confidence 2234777788544 22221 112233345666666554 458999998643 234445555543
No 88
>cd07394 MPP_Vps29 Homo sapiens Vps29 and related proteins, metallophosphatase domain. Vps29 (vacuolar sorting protein 29), also known as vacuolar membrane protein Pep11, is a subunit of the retromer complex which is responsible for the retrieval of mannose-6-phosphate receptors (MPRs) from the endosomes for retrograde transport back to the Golgi. Vps29 has a phosphoesterase fold that acts as a protein interaction scaffold for retromer complex assembly as well as a phosphatase with specificity for the cytoplasmic tail of the MPR. The retromer includes the following 5 subunits: Vps35, Vps26, Vps29, and a dimer of the sorting nexins Vps5 (Snx1), and Vps17 (Snx2). Vps29 belongs to the metallophosphatase (MPP) superfamily. MPPs are functionally diverse, but all share a conserved domain with an active site consisting of two metal ions (usually manganese, iron, or zinc) coordinated with octahedral geometry by a cage of histidine, aspartate, and asparagine residues. The MPP superfamily incl
Probab=98.06 E-value=0.00014 Score=72.59 Aligned_cols=57 Identities=28% Similarity=0.447 Sum_probs=41.3
Q ss_pred eEEEecCC-CCHH-----HHHHHHHHhCCCCCCCCcceeeEEEeccccCCCCChHHHHHHHHHHhhcCCCcEEEecCCcc
Q 003577 508 VKVFGDLH-GQFG-----DLMRLFDEYGFPSTAGDITYIDYLFLGDYVDRGQHSLETITLLLALKIEYPENVHLIRGNHE 581 (810)
Q Consensus 508 i~vvGDiH-G~~~-----~L~~~l~~~~~~~~~~~~~~~~~vfLGDyVDRG~~s~evl~ll~~lk~~~p~~v~llrGNHE 581 (810)
|.||+|+| |.-. .+.++++..+ .+ .++.+||+++ .+++.+|..++ ..++.++||||
T Consensus 2 i~viSDtHl~~~~~~~~~~~~~~~~~~~---~d------~iih~GDi~~-----~~~~~~l~~~~----~~~~~V~GN~D 63 (178)
T cd07394 2 VLVIGDLHIPHRASDLPAKFKKLLVPGK---IQ------HVLCTGNLCS-----KETYDYLKTIA----PDVHIVRGDFD 63 (178)
T ss_pred EEEEEecCCCCCchhhHHHHHHHhccCC---CC------EEEECCCCCC-----HHHHHHHHhhC----CceEEEECCCC
Confidence 78999999 6543 3566665411 12 6888999987 77777776652 25899999999
Q ss_pred c
Q 003577 582 A 582 (810)
Q Consensus 582 ~ 582 (810)
.
T Consensus 64 ~ 64 (178)
T cd07394 64 E 64 (178)
T ss_pred c
Confidence 6
No 89
>smart00612 Kelch Kelch domain.
Probab=97.94 E-value=1.4e-05 Score=60.48 Aligned_cols=45 Identities=22% Similarity=0.326 Sum_probs=39.3
Q ss_pred EEEEccCCCCCCCCcEEEEecCCCCcEEEEecCCCCCCCcccceEEEEeC
Q 003577 91 LVSVSGNDGKRVLSDAWALDTAQKPYVWQRLNPEGDRPSARMYATASARS 140 (810)
Q Consensus 91 l~VfGG~~g~~~~ndv~~yd~~~~~~~W~~i~~~g~~P~~R~~hsa~~~~ 140 (810)
|||+||.++...++++++||+.++ +|+.+.+ +|.+|..|+++++.
T Consensus 2 iyv~GG~~~~~~~~~v~~yd~~~~--~W~~~~~---~~~~r~~~~~~~~~ 46 (47)
T smart00612 2 IYVVGGFDGGQRLKSVEVYDPETN--KWTPLPS---MPTPRSGHGVAVIN 46 (47)
T ss_pred EEEEeCCCCCceeeeEEEECCCCC--eEccCCC---CCCccccceEEEeC
Confidence 899999987778899999999999 9998775 88899999988664
No 90
>PF07250 Glyoxal_oxid_N: Glyoxal oxidase N-terminus; InterPro: IPR009880 This entry represents the N terminus (approximately 300 residues) of a number of plant and fungal glyoxal oxidase enzymes. Glyoxal oxidase catalyses the oxidation of aldehydes to carboxylic acids, coupled with reduction of dioxygen to hydrogen peroxide. It is an essential component of the extracellular lignin degradation pathways of the wood-rot fungus Phanerochaete chrysosporium [].
Probab=97.92 E-value=0.00046 Score=71.75 Aligned_cols=177 Identities=15% Similarity=0.216 Sum_probs=110.5
Q ss_pred cEEEEECCEEEEECccC--CCCCc-------------------cCcEEEEEccCCceEEEEEeecCCCCCcccccEEEEE
Q 003577 28 HAAAAVGTMVVFQGGIG--PAGHS-------------------TDDLYVLDLTNDKFKWHRVVVQGQGPGPRYGHVMDLV 86 (810)
Q Consensus 28 haa~~~~~~lyv~GG~~--~~~~~-------------------~~dl~~lDl~t~~~~W~~v~~~g~~P~~R~~Hs~~~v 86 (810)
|.+....++|++|-..+ ++... ...-..||+.+++ ++.+.. +.--++.+.+..
T Consensus 2 h~~~~~~~~v~~~d~t~~g~s~~~~~~~~c~~~~~~~~~~~d~~a~s~~yD~~tn~--~rpl~v----~td~FCSgg~~L 75 (243)
T PF07250_consen 2 HMALLHNNKVIMFDRTNFGPSNISLPDGRCRDNPEDNALKFDGPAHSVEYDPNTNT--FRPLTV----QTDTFCSGGAFL 75 (243)
T ss_pred eEeEccCCEEEEEeCCCcccccccCCCCccccCccccccccCceEEEEEEecCCCc--EEeccC----CCCCcccCcCCC
Confidence 66777778888877653 11100 0112367888755 655543 344555555666
Q ss_pred CCcEEEEEccCCCCCCCCcEEEEecCC--CCcEEEEecCCCCCCCcccceEEEEeCCcEEEEEcccCCCCCccccEEEEE
Q 003577 87 SQRYLVSVSGNDGKRVLSDAWALDTAQ--KPYVWQRLNPEGDRPSARMYATASARSDGMFLLCGGRDASGAPLADAYGLL 164 (810)
Q Consensus 87 ~~~~l~VfGG~~g~~~~ndv~~yd~~~--~~~~W~~i~~~g~~P~~R~~hsa~~~~~~~l~v~GG~~~~g~~l~d~~~l~ 164 (810)
.++.+++.||..+. ...+..|++.+ ..-.|...... +-.+|.|.++....|+.++|.||... ..+.+.
T Consensus 76 ~dG~ll~tGG~~~G--~~~ir~~~p~~~~~~~~w~e~~~~--m~~~RWYpT~~~L~DG~vlIvGG~~~------~t~E~~ 145 (243)
T PF07250_consen 76 PDGRLLQTGGDNDG--NKAIRIFTPCTSDGTCDWTESPND--MQSGRWYPTATTLPDGRVLIVGGSNN------PTYEFW 145 (243)
T ss_pred CCCCEEEeCCCCcc--ccceEEEecCCCCCCCCceECccc--ccCCCccccceECCCCCEEEEeCcCC------Cccccc
Confidence 77789999998542 23456677644 11268775432 67789999999999999999999873 234444
Q ss_pred eCC---CCeEEE--EeCC-CCCCCcccceEEEEECCEEEEEcccCCCCCCCCCCceEEEEECCCCcE-EEcccC
Q 003577 165 MHR---NGQWEW--TLAP-GVAPSPRYQHAAVFVGARLHVTGGALRGGRAIEGEAAVAVLDTAAGVW-LDRNGL 231 (810)
Q Consensus 165 ~~~---~~~W~~--~~~~-g~~P~~R~~hsav~~~~~l~V~GG~~~~~~~~~~~~~l~~yD~~t~~W-~~v~~~ 231 (810)
... ...+.+ .... ...+..-|-+..+.-+++||+++... -.+||..++++ +.++.+
T Consensus 146 P~~~~~~~~~~~~~l~~~~~~~~~nlYP~~~llPdG~lFi~an~~-----------s~i~d~~~n~v~~~lP~l 208 (243)
T PF07250_consen 146 PPKGPGPGPVTLPFLSQTSDTLPNNLYPFVHLLPDGNLFIFANRG-----------SIIYDYKTNTVVRTLPDL 208 (243)
T ss_pred CCccCCCCceeeecchhhhccCccccCceEEEcCCCCEEEEEcCC-----------cEEEeCCCCeEEeeCCCC
Confidence 432 112222 2111 12344556666777799999998752 46889999987 677765
No 91
>cd07403 MPP_TTHA0053 Thermus thermophilus TTHA0053 and related proteins, metallophosphatase domain. TTHA0053 is an uncharacterized Thermus thermophilus protein with a domain that belongs to the metallophosphatase (MPP) superfamily. MPPs are functionally diverse, but all share a conserved domain with an active site consisting of two metal ions (usually manganese, iron, or zinc) coordinated with octahedral geometry by a cage of histidine, aspartate, and asparagine residues. The MPP superfamily includes: Mre11/SbcD-like exonucleases, Dbr1-like RNA lariat debranching enzymes, YfcE-like phosphodiesterases, purple acid phosphatases (PAPs), YbbF-like UDP-2,3-diacylglucosamine hydrolases, and acid sphingomyelinases (ASMases). The conserved domain is a double beta-sheet sandwich with a di-metal active site made up of residues located at the C-terminal side of the sheets. This domain is thought to allow for productive metal coordination.
Probab=97.74 E-value=0.00031 Score=66.23 Aligned_cols=56 Identities=20% Similarity=0.146 Sum_probs=39.4
Q ss_pred EEEecCCCCHHHHHHHHHHhCCCCCCCCcceeeEEEeccccCCCCChHHHHHHHHHHhhcCCCcEEEecCCcc
Q 003577 509 KVFGDLHGQFGDLMRLFDEYGFPSTAGDITYIDYLFLGDYVDRGQHSLETITLLLALKIEYPENVHLIRGNHE 581 (810)
Q Consensus 509 ~vvGDiHG~~~~L~~~l~~~~~~~~~~~~~~~~~vfLGDyVDRG~~s~evl~ll~~lk~~~p~~v~llrGNHE 581 (810)
.|++|+||..+.+.++.... ...+ .++++||+. .+++.++..++ ...++.++||||
T Consensus 1 ~viSDtH~~~~~~~~~~~~~--~~~d------~ii~~GD~~------~~~~~~~~~~~---~~~~~~V~GN~D 56 (129)
T cd07403 1 LVISDTESPALYSPEIKVRL--EGVD------LILSAGDLP------KEYLEYLVTML---NVPVYYVHGNHD 56 (129)
T ss_pred CeeccccCccccchHHHhhC--CCCC------EEEECCCCC------hHHHHHHHHHc---CCCEEEEeCCCc
Confidence 38999999988777766652 1112 799999984 34556665542 224899999999
No 92
>cd07392 MPP_PAE1087 Pyrobaculum aerophilum PAE1087 and related proteins, metallophosphatase domain. PAE1087 is an uncharacterized Pyrobaculum aerophilum protein with a metallophosphatase domain. The domain present in members of this family belongs to the metallophosphatase (MPP) superfamily. MPPs are functionally diverse, but all share a conserved domain with an active site consisting of two metal ions (usually manganese, iron, or zinc) coordinated with octahedral geometry by a cage of histidine, aspartate, and asparagine residues. The MPP superfamily includes: Mre11/SbcD-like exonucleases, Dbr1-like RNA lariat debranching enzymes, YfcE-like phosphodiesterases, purple acid phosphatases (PAPs), YbbF-like UDP-2,3-diacylglucosamine hydrolases, and acid sphingomyelinases (ASMases). The conserved domain is a double beta-sheet sandwich with a di-metal active site made up of residues located at the C-terminal side of the sheets. This domain is thought to allow for productive metal coordina
Probab=97.67 E-value=8.4e-05 Score=74.41 Aligned_cols=65 Identities=23% Similarity=0.307 Sum_probs=44.0
Q ss_pred eEEEecCCCCHHHHHHHHHHhCCCCCCCCcceeeEEEeccccCCCCCh-HHHHHHHHHHhhcCCCcEEEecCCccccc
Q 003577 508 VKVFGDLHGQFGDLMRLFDEYGFPSTAGDITYIDYLFLGDYVDRGQHS-LETITLLLALKIEYPENVHLIRGNHEAAD 584 (810)
Q Consensus 508 i~vvGDiHG~~~~L~~~l~~~~~~~~~~~~~~~~~vfLGDyVDRG~~s-~evl~ll~~lk~~~p~~v~llrGNHE~~~ 584 (810)
|.+++||||++..+.. ........+ -+|+.||++++|... .+.+..|.. .+..++.+.||||...
T Consensus 1 i~~~sD~H~~~~~~~~--~~~~~~~~D------~vv~~GDl~~~~~~~~~~~~~~l~~----~~~p~~~v~GNHD~~~ 66 (188)
T cd07392 1 ILAISDIHGDVEKLEA--IILKAEEAD------AVIVAGDITNFGGKEAAVEINLLLA----IGVPVLAVPGNCDTPE 66 (188)
T ss_pred CEEEEecCCCHHHHHH--HHhhccCCC------EEEECCCccCcCCHHHHHHHHHHHh----cCCCEEEEcCCCCCHH
Confidence 5789999999998876 222111111 688899999999763 333333322 3446999999999754
No 93
>smart00612 Kelch Kelch domain.
Probab=97.63 E-value=8e-05 Score=56.28 Aligned_cols=47 Identities=26% Similarity=0.349 Sum_probs=37.7
Q ss_pred EEEEEcccCCCCCCCCCCceEEEEECCCCcEEEcccCccCCCCCCCCCCCCCCCCCCcceeeEEEEeCC
Q 003577 195 RLHVTGGALRGGRAIEGEAAVAVLDTAAGVWLDRNGLVTSSRTSKGHGEHDPSLELMRRCRHASASIGV 263 (810)
Q Consensus 195 ~l~V~GG~~~~~~~~~~~~~l~~yD~~t~~W~~v~~~~~~~~~~~~~~~~~~~~~p~~R~~hs~~~~~~ 263 (810)
+|||+||.... ...+++++||+.+++|+.++.+ |.+|..|+++.+++
T Consensus 1 ~iyv~GG~~~~----~~~~~v~~yd~~~~~W~~~~~~------------------~~~r~~~~~~~~~g 47 (47)
T smart00612 1 KIYVVGGFDGG----QRLKSVEVYDPETNKWTPLPSM------------------PTPRSGHGVAVING 47 (47)
T ss_pred CEEEEeCCCCC----ceeeeEEEECCCCCeEccCCCC------------------CCccccceEEEeCC
Confidence 48999998542 2357799999999999998876 56899899888753
No 94
>PRK05340 UDP-2,3-diacylglucosamine hydrolase; Provisional
Probab=97.61 E-value=0.00021 Score=74.99 Aligned_cols=69 Identities=20% Similarity=0.262 Sum_probs=46.1
Q ss_pred CeEEEecCCCCH------HHHHHHHHHhCCCCCCCCcceeeEEEeccccCC-------CCChHHHHHHHHHHhhcCCCcE
Q 003577 507 PVKVFGDLHGQF------GDLMRLFDEYGFPSTAGDITYIDYLFLGDYVDR-------GQHSLETITLLLALKIEYPENV 573 (810)
Q Consensus 507 pi~vvGDiHG~~------~~L~~~l~~~~~~~~~~~~~~~~~vfLGDyVDR-------G~~s~evl~ll~~lk~~~p~~v 573 (810)
++++++|+|... ..|+++++.....+ + .++++||++|. .+...+++.+|..|+.. +-.+
T Consensus 2 ~i~~iSDlHl~~~~~~~~~~~~~~l~~~~~~~-d------~l~i~GDl~d~~~g~~~~~~~~~~~~~~l~~l~~~-g~~v 73 (241)
T PRK05340 2 PTLFISDLHLSPERPAITAAFLRFLRGEARQA-D------ALYILGDLFEAWIGDDDPSPFAREIAAALKALSDS-GVPC 73 (241)
T ss_pred cEEEEeecCCCCCChhHHHHHHHHHHhhhccC-C------EEEEccceeccccccCcCCHHHHHHHHHHHHHHHc-CCeE
Confidence 588999999542 24555554322111 1 68889999985 23346677777777533 2469
Q ss_pred EEecCCcccc
Q 003577 574 HLIRGNHEAA 583 (810)
Q Consensus 574 ~llrGNHE~~ 583 (810)
++++||||..
T Consensus 74 ~~v~GNHD~~ 83 (241)
T PRK05340 74 YFMHGNRDFL 83 (241)
T ss_pred EEEeCCCchh
Confidence 9999999974
No 95
>KOG0376 consensus Serine-threonine phosphatase 2A, catalytic subunit [General function prediction only]
Probab=97.59 E-value=1.4e-05 Score=88.08 Aligned_cols=243 Identities=11% Similarity=-0.013 Sum_probs=160.2
Q ss_pred ccCHHHHHHHHHHHHHHHhcCCceEeecC----CeEEEecCCCCHHHHHHHHHHhCCCCCCCCcceeeEEEeccccCCCC
Q 003577 478 FLDSYEVGELCYAAEQIFMQEPTVLQLRA----PVKVFGDLHGQFGDLMRLFDEYGFPSTAGDITYIDYLFLGDYVDRGQ 553 (810)
Q Consensus 478 ~~~~~~i~~l~~~~~~~~~~e~~~l~~~~----pi~vvGDiHG~~~~L~~~l~~~~~~~~~~~~~~~~~vfLGDyVDRG~ 553 (810)
.|...++..+++.+.+++..+|+...+.+ -.+.++|.||.+.|+.++++.- |... .-|++-|++|+++.
T Consensus 14 ~l~~~~fd~avdlysKaI~ldpnca~~~anRa~a~lK~e~~~~Al~Da~kaie~d---P~~~----K~Y~rrg~a~m~l~ 86 (476)
T KOG0376|consen 14 ALKDKVFDVAVDLYSKAIELDPNCAIYFANRALAHLKVESFGGALHDALKAIELD---PTYI----KAYVRRGTAVMALG 86 (476)
T ss_pred hcccchHHHHHHHHHHHHhcCCcceeeechhhhhheeechhhhHHHHHHhhhhcC---chhh----heeeeccHHHHhHH
Confidence 56778899999999999999998888643 4889999999999999988763 2221 15999999999999
Q ss_pred ChHHHHHHHHHHhhcCCCcEEEecCCccccchhhccCChHHHHHhhCCCCccccccccccccccCceeEEEcCcEEEecC
Q 003577 554 HSLETITLLLALKIEYPENVHLIRGNHEAADINALFGFRLECIERMGENDGIWAWTRFNQLFNCLPLAALIEKKIICMHG 633 (810)
Q Consensus 554 ~s~evl~ll~~lk~~~p~~v~llrGNHE~~~~~~~~gf~~e~~~~~~~~~~~~~~~~~~~~f~~lPla~~i~~~il~vHg 633 (810)
...+.+..|...+..-|+...+.|++||+..+-..++|..+....++.. +..++..+...+-. |++..+++.++=-|
T Consensus 87 ~~~~A~~~l~~~~~l~Pnd~~~~r~~~Ec~~~vs~~~fe~ai~~~~~d~-~s~~~~~~~~~~~~-~i~~~y~g~~le~~- 163 (476)
T KOG0376|consen 87 EFKKALLDLEKVKKLAPNDPDATRKIDECNKIVSEEKFEKAILTPEGDK-KSVVEMKIDEEDMD-LIESDYSGPVLEDH- 163 (476)
T ss_pred HHHHHHHHHHHhhhcCcCcHHHHHHHHHHHHHHHHHhhhhcccCCccCC-cccccccccccccc-ccccccCCcccccc-
Confidence 9999999999999999999999999999999999999988877766543 22233323222221 25555554333332
Q ss_pred CcCCc--------------cc-----c-hhhh----hcccCCcccCCCchhhhhhccCCCCCCCCCCCCCcCCCCCceee
Q 003577 634 GIGRS--------------IH-----S-VEQI----EKLERPITMDAGSIILMDLLWSDPTENDSIEGLRPNARGPGLVT 689 (810)
Q Consensus 634 Gi~~~--------------~~-----~-~~~i----~~~~rp~~~~~~~~~~~dllWsdP~~~~~~~~~~~~~rg~~~~~ 689 (810)
-+.-. +. + +++. +.+.-++++. .-.|..|+++.... ..+-...++.+ ..
T Consensus 164 kvt~e~vk~~~~~~~~~~~L~~k~a~~i~~~~~~~~~~l~~~ve~~----~~~d~~~sv~gd~h--Gqfydl~nif~-l~ 236 (476)
T KOG0376|consen 164 KVTLEFVKTLMEVFKNQKKLPKKYAYSILDLAKTILRKLPSLVEIS----VPGDVKISVCGDTH--GQFYDLLNIFE-LN 236 (476)
T ss_pred hhhHHHHHHHHHhhhcccccccccceeeHHHHhhHHhcCCcceEee----cCCCceEEecCCcc--ccccchhhhHh-hc
Confidence 11100 00 0 0111 1111122211 34567888876421 22333355555 34
Q ss_pred eCHHHHHHHHHhcCCcEEEEeccccc-----------c-ceEEe---cCCeEEEEEccCCCCC
Q 003577 690 FGPDRVSDFCKRNKLQLIIRAHECVM-----------D-GFERF---AQGQLITLFSATNYCG 737 (810)
Q Consensus 690 fg~~~~~~fl~~~~l~~iiR~H~~~~-----------~-G~~~~---~~~~~itvfSa~~y~~ 737 (810)
.+++....||.+.++.-+++.|.-+. + +|... ..+.++++|+++.+|-
T Consensus 237 g~Ps~t~~ylfngdfv~rgs~s~e~~~~~~~~kl~~pn~~fl~rgn~Es~~m~~iy~f~~e~~ 299 (476)
T KOG0376|consen 237 GLPSETNPYLFNGDFVDRGSWSVEVILTLFAFKLLYPNNFFLLRGNHESDNMNKIYGFEGEVK 299 (476)
T ss_pred CCCCCcccccccCceeeecccceeeeeeehhhcccCCcceeeccCCccchHHHHHhCCCcchh
Confidence 56777778888888888888775432 1 12111 1235899999998874
No 96
>TIGR01854 lipid_A_lpxH UDP-2,3-diacylglucosamine hydrolase. This model represents LpxH, UDP-2,3-diacylglucosamine hydrolase, and essential enzyme in E. coli that catalyzes the fourth step in lipid A biosynthesis. Note that Pseudomonas aeruginosa has both a member of this family that shares this function and a more distant homolog, designated LpxH2, that does not. Many species that produce lipid A lack an lpxH gene in this family; some of those species have an lpxH2 gene instead, although for which the function is unknown.
Probab=97.56 E-value=0.00054 Score=71.47 Aligned_cols=178 Identities=13% Similarity=0.167 Sum_probs=89.2
Q ss_pred eEEEecCCCCH------HHHHHHHHHhCCCCCCCCcceeeEEEeccccCCC-----CC--hHHHHHHHHHHhhcCCCcEE
Q 003577 508 VKVFGDLHGQF------GDLMRLFDEYGFPSTAGDITYIDYLFLGDYVDRG-----QH--SLETITLLLALKIEYPENVH 574 (810)
Q Consensus 508 i~vvGDiHG~~------~~L~~~l~~~~~~~~~~~~~~~~~vfLGDyVDRG-----~~--s~evl~ll~~lk~~~p~~v~ 574 (810)
+++++|+|... ..|++.+......+ + .++++||++|.. +. ..++..+|..|+.. +..++
T Consensus 1 ~~~iSDlHl~~~~~~~~~~~l~~l~~~~~~~-d------~lii~GDi~d~~~~~~~~~~~~~~~~~~l~~L~~~-~~~v~ 72 (231)
T TIGR01854 1 TLFISDLHLSPERPDITALFLDFLREEARKA-D------ALYILGDLFEAWIGDDDPSTLARSVAQAIRQVSDQ-GVPCY 72 (231)
T ss_pred CeEEEecCCCCCChhHHHHHHHHHHhhhccC-C------EEEEcCceeccccCCCCCCHHHHHHHHHHHHHHHC-CCeEE
Confidence 36899999542 24555554432122 1 688899999952 11 23455666666533 45799
Q ss_pred EecCCccccchhhccCChHHHHHhhCCCCccccccccccccccCceeEE-EcCcEEEecCCcCCccc-chhhhhcccC-C
Q 003577 575 LIRGNHEAADINALFGFRLECIERMGENDGIWAWTRFNQLFNCLPLAAL-IEKKIICMHGGIGRSIH-SVEQIEKLER-P 651 (810)
Q Consensus 575 llrGNHE~~~~~~~~gf~~e~~~~~~~~~~~~~~~~~~~~f~~lPla~~-i~~~il~vHgGi~~~~~-~~~~i~~~~r-p 651 (810)
++.||||...-. ...... +. .++.. +.... -+.+++++||-.-..-. .-.-.+++-| |
T Consensus 73 ~v~GNHD~~~~~-------~~~~~~----gi-------~~l~~-~~~~~~~g~~ill~HGd~~~~~d~~y~~~r~~~r~~ 133 (231)
T TIGR01854 73 FMHGNRDFLIGK-------RFAREA----GM-------TLLPD-PSVIDLYGQKVLLMHGDTLCTDDTAYQAFRAKVHQP 133 (231)
T ss_pred EEcCCCchhhhH-------HHHHHC----CC-------EEECC-CEEEEECCEEEEEEcCccccCCCHHHHHHHHHHhCH
Confidence 999999974211 011111 11 11211 11222 34689999997653200 1111122211 1
Q ss_pred cc------cCC-CchhhhhhccCCCCCCCCCCCCCcCCCCCceeeeCHHHHHHHHHhcCCcEEEEeccccccceE
Q 003577 652 IT------MDA-GSIILMDLLWSDPTENDSIEGLRPNARGPGLVTFGPDRVSDFCKRNKLQLIIRAHECVMDGFE 719 (810)
Q Consensus 652 ~~------~~~-~~~~~~dllWsdP~~~~~~~~~~~~~rg~~~~~fg~~~~~~fl~~~~l~~iiR~H~~~~~G~~ 719 (810)
.. .+. ....+...+++..... ....+ .-.....+..+++++++.+.+++|-||.-.+.=+.
T Consensus 134 ~~~~~~~~l~~~~r~~l~~~~~~~s~~~---~~~~~----~~~~~~~~~~~~~~~~~~~~~~~i~GHtH~~~~~~ 201 (231)
T TIGR01854 134 WLQRLFLHLPLAVRVKLARKIRAESRAD---KQMKS----QDIMDVNPAEVAAVMRRYGVDRLIHGHTHRPAIHP 201 (231)
T ss_pred HHHHHHHhCCHHHHHHHHHHHHHHHHHh---cCCCc----chhhCCCHHHHHHHHHHcCCCEEEECCccCcceee
Confidence 10 000 0012233344322110 00000 01233567888999999999999999986554333
No 97
>cd07400 MPP_YydB Bacillus subtilis YydB and related proteins, metallophosphatase domain. YydB (BSU40220) is an uncharacterized Bacillus subtilis protein that belongs to the following Bacillus subtilis gene cluster yydB-yydC-yydD-yydG-yydH-yydI-yydJ. YydB belongs to the metallophosphatase (MPP) superfamily. MPPs are functionally diverse, but all share a conserved domain with an active site consisting of two metal ions (usually manganese, iron, or zinc) coordinated with octahedral geometry by a cage of histidine, aspartate, and asparagine residues. The MPP superfamily includes: Mre11/SbcD-like exonucleases, Dbr1-like RNA lariat debranching enzymes, YfcE-like phosphodiesterases, purple acid phosphatases (PAPs), YbbF-like UDP-2,3-diacylglucosamine hydrolases, and acid sphingomyelinases (ASMases). The conserved domain is a double beta-sheet sandwich with a di-metal active site made up of residues located at the C-terminal side of the sheets. This domain is thought to allow for productiv
Probab=97.49 E-value=0.0019 Score=61.83 Aligned_cols=29 Identities=10% Similarity=0.094 Sum_probs=23.5
Q ss_pred CHHHHHHHHHhcCCcEEEEeccccccceE
Q 003577 691 GPDRVSDFCKRNKLQLIIRAHECVMDGFE 719 (810)
Q Consensus 691 g~~~~~~fl~~~~l~~iiR~H~~~~~G~~ 719 (810)
+.+.+.+++++.++++++-||.-....+.
T Consensus 101 ~~~~~~~~l~~~~~~~~l~GH~H~~~~~~ 129 (144)
T cd07400 101 DAGDALKLLAEAGVDLVLHGHKHVPYVGN 129 (144)
T ss_pred CHHHHHHHHHHcCCCEEEECCCCCcCeee
Confidence 56778899999999999999987654444
No 98
>cd07404 MPP_MS158 Microscilla MS158 and related proteins, metallophosphatase domain. MS158 is an uncharacterized Microscilla protein with a metallophosphatase domain. Microscilla proteins MS152, and MS153 are also included in this family. The domain present in members of this family belongs to the metallophosphatase (MPP) superfamily. MPPs are functionally diverse, but all share a conserved domain with an active site consisting of two metal ions (usually manganese, iron, or zinc) coordinated with octahedral geometry by a cage of histidine, aspartate, and asparagine residues. The MPP superfamily includes: Mre11/SbcD-like exonucleases, Dbr1-like RNA lariat debranching enzymes, YfcE-like phosphodiesterases, purple acid phosphatases (PAPs), YbbF-like UDP-2,3-diacylglucosamine hydrolases, and acid sphingomyelinases (ASMases). The conserved domain is a double beta-sheet sandwich with a di-metal active site made up of residues located at the C-terminal side of the sheets. This domain is t
Probab=97.46 E-value=0.00011 Score=72.43 Aligned_cols=67 Identities=27% Similarity=0.231 Sum_probs=45.0
Q ss_pred eEEEecCCCCHHHHHHHHHH-hCCCCCCCCcceeeEEEeccccCCCCChHHHHHHHHHHhhcCCCcEEEecCCcccc
Q 003577 508 VKVFGDLHGQFGDLMRLFDE-YGFPSTAGDITYIDYLFLGDYVDRGQHSLETITLLLALKIEYPENVHLIRGNHEAA 583 (810)
Q Consensus 508 i~vvGDiHG~~~~L~~~l~~-~~~~~~~~~~~~~~~vfLGDyVDRG~~s~evl~ll~~lk~~~p~~v~llrGNHE~~ 583 (810)
+.+++|||+....+...+.. ......+ -++++||+++++.....+. ++.. ...+..+++++||||..
T Consensus 1 ~~~iSDlH~~~~~~~~~~~~~~~~~~~d------~li~~GDi~~~~~~~~~~~-~~~~--~~~~~~v~~v~GNHD~~ 68 (166)
T cd07404 1 IQYLSDLHLEFEDNLADLLNFPIAPDAD------ILVLAGDIGYLTDAPRFAP-LLLA--LKGFEPVIYVPGNHEFY 68 (166)
T ss_pred CceEccccccCccccccccccCCCCCCC------EEEECCCCCCCcchHHHHH-HHHh--hcCCccEEEeCCCcceE
Confidence 46899999998777665431 1111111 6888999999987765544 2222 23445799999999986
No 99
>PRK11340 phosphodiesterase YaeI; Provisional
Probab=97.36 E-value=0.00044 Score=73.95 Aligned_cols=69 Identities=19% Similarity=0.062 Sum_probs=48.2
Q ss_pred CeEEEecCCCC----HHHHHHHHHHhCCCCCCCCcceeeEEEeccccCCC--CChHHHHHHHHHHhhcCCCcEEEecCCc
Q 003577 507 PVKVFGDLHGQ----FGDLMRLFDEYGFPSTAGDITYIDYLFLGDYVDRG--QHSLETITLLLALKIEYPENVHLIRGNH 580 (810)
Q Consensus 507 pi~vvGDiHG~----~~~L~~~l~~~~~~~~~~~~~~~~~vfLGDyVDRG--~~s~evl~ll~~lk~~~p~~v~llrGNH 580 (810)
++.+++|||.. ...+.++++.......+ -+++.|||+|++ ...-++..+|..|+... .++.+.|||
T Consensus 51 rI~~lSDlH~~~~~~~~~l~~~v~~i~~~~pD------lVli~GD~~d~~~~~~~~~~~~~L~~L~~~~--pv~~V~GNH 122 (271)
T PRK11340 51 KILFLADLHYSRFVPLSLISDAIALGIEQKPD------LILLGGDYVLFDMPLNFSAFSDVLSPLAECA--PTFACFGNH 122 (271)
T ss_pred EEEEEcccCCCCcCCHHHHHHHHHHHHhcCCC------EEEEccCcCCCCccccHHHHHHHHHHHhhcC--CEEEecCCC
Confidence 48999999976 45567777664322222 688899999954 23345666677776544 499999999
Q ss_pred ccc
Q 003577 581 EAA 583 (810)
Q Consensus 581 E~~ 583 (810)
|..
T Consensus 123 D~~ 125 (271)
T PRK11340 123 DRP 125 (271)
T ss_pred Ccc
Confidence 964
No 100
>cd07399 MPP_YvnB Bacillus subtilis YvnB and related proteins, metallophosphatase domain. YvnB (BSU35040) is an uncharacterized Bacillus subtilis protein with a metallophosphatase domain. This family includes bacterial and eukaryotic proteins similar to YvnB. YvnB belongs to the metallophosphatase (MPP) superfamily. MPPs are functionally diverse, but all share a conserved domain with an active site consisting of two metal ions (usually manganese, iron, or zinc) coordinated with octahedral geometry by a cage of histidine, aspartate, and asparagine residues. The MPP superfamily includes: Mre11/SbcD-like exonucleases, Dbr1-like RNA lariat debranching enzymes, YfcE-like phosphodiesterases, purple acid phosphatases (PAPs), YbbF-like UDP-2,3-diacylglucosamine hydrolases, and acid sphingomyelinases (ASMases). The conserved domain is a double beta-sheet sandwich with a di-metal active site made up of residues located at the C-terminal side of the sheets. This domain is thought to allow for
Probab=97.32 E-value=0.0096 Score=61.31 Aligned_cols=71 Identities=13% Similarity=0.124 Sum_probs=39.9
Q ss_pred eCHHHHHHHHHhc-CCcEEEEeccccccceEEe-----cCCeEEEEEccCCCCCCCCCe-EEEEEEcCc-ceEEEEEecC
Q 003577 690 FGPDRVSDFCKRN-KLQLIIRAHECVMDGFERF-----AQGQLITLFSATNYCGTANNA-GAILVVGRG-LVVVPKLIHP 761 (810)
Q Consensus 690 fg~~~~~~fl~~~-~l~~iiR~H~~~~~G~~~~-----~~~~~itvfSa~~y~~~~~n~-ga~l~~~~~-~~~~~~~~~~ 761 (810)
.+...+.+.++++ ++++++-||.-.. +.... .++.+..+++....-...+|. =.++.++.+ .+|..+.+.|
T Consensus 135 ~~~~~~~~ll~~~~~V~~v~~GH~H~~-~~~~~~~~~~~g~~v~~~~~~~q~~~~~g~~~~r~~~f~~~~~~i~~~tysp 213 (214)
T cd07399 135 DGQQIWDKLVKKNDNVFMVLSGHVHGA-GRTTLVSVGDAGRTVHQMLADYQGEPNGGNGFLRLLEFDPDNNKIDVRTYSP 213 (214)
T ss_pred cHHHHHHHHHhCCCCEEEEEccccCCC-ceEEEcccCCCCCEeeEEeecccCCCCCCcceEEEEEEecCCCEEEEEeCCC
Confidence 4666788889988 8999999996542 23222 234455554432111111221 145566665 4677766655
No 101
>cd07385 MPP_YkuE_C Bacillus subtilis YkuE and related proteins, C-terminal metallophosphatase domain. YkuE is an uncharacterized Bacillus subtilis protein with a C-terminal metallophosphatase domain and an N-terminal twin-arginine (RR) motif. An RR-signal peptide derived from the Bacillus subtilis YkuE protein can direct Tat-dependent secretion of agarase in Streptomyces lividans. This is an indication that YkuE is transported by the Bacillus subtilis Tat (Twin-arginine translocation) pathway machinery. YkuE belongs to the metallophosphatase (MPP) superfamily. MPPs are functionally diverse, but all share a conserved domain with an active site consisting of two metal ions (usually manganese, iron, or zinc) coordinated with octahedral geometry by a cage of histidine, aspartate, and asparagine residues. The MPP superfamily includes: Mre11/SbcD-like exonucleases, Dbr1-like RNA lariat debranching enzymes, YfcE-like phosphodiesterases, purple acid phosphatases (PAPs), YbbF-like UDP-2,3-dia
Probab=97.26 E-value=0.00046 Score=71.34 Aligned_cols=70 Identities=29% Similarity=0.289 Sum_probs=48.7
Q ss_pred CeEEEecCCCCHH----HHHHHHHHhCCCCCCCCcceeeEEEeccccCCCCChH-HHHHHHHHHhhcCCCcEEEecCCcc
Q 003577 507 PVKVFGDLHGQFG----DLMRLFDEYGFPSTAGDITYIDYLFLGDYVDRGQHSL-ETITLLLALKIEYPENVHLIRGNHE 581 (810)
Q Consensus 507 pi~vvGDiHG~~~----~L~~~l~~~~~~~~~~~~~~~~~vfLGDyVDRG~~s~-evl~ll~~lk~~~p~~v~llrGNHE 581 (810)
.+.+++|+|.... .+.++++.......+ -+++.||++|.+.... ++..++..++ .+..++++.||||
T Consensus 3 ~i~~~sDlH~~~~~~~~~~~~~~~~~~~~~~d------~vl~~GD~~~~~~~~~~~~~~~l~~l~--~~~~v~~v~GNHD 74 (223)
T cd07385 3 RIAHLSDLHLGPFVSRERLERLVEKINALKPD------LVVLTGDLVDGSVDVLELLLELLKKLK--APLGVYAVLGNHD 74 (223)
T ss_pred EEEEEeecCCCccCCHHHHHHHHHHHhccCCC------EEEEcCcccCCcchhhHHHHHHHhccC--CCCCEEEECCCcc
Confidence 5889999998743 566666655422212 6888999999988765 5555555443 3346999999999
Q ss_pred ccc
Q 003577 582 AAD 584 (810)
Q Consensus 582 ~~~ 584 (810)
...
T Consensus 75 ~~~ 77 (223)
T cd07385 75 YYS 77 (223)
T ss_pred ccc
Confidence 843
No 102
>TIGR03729 acc_ester putative phosphoesterase. Members of this protein family belong to the larger family pfam00149 (calcineurin-like phosphoesterase), a family largely defined by small motifs of metal-chelating residues. The subfamily in this model shows a good but imperfect co-occurrence in species with domain TIGR03715 that defines a novel class of signal peptide typical of the accessory secretory system.
Probab=97.00 E-value=0.0016 Score=68.20 Aligned_cols=68 Identities=25% Similarity=0.190 Sum_probs=45.8
Q ss_pred CeEEEecCCCCH-----H-HHHHHHHHhCCCCCCCCcceeeEEEeccccCCCCChHHHHHHHHHHhhcCCCcEEEecCCc
Q 003577 507 PVKVFGDLHGQF-----G-DLMRLFDEYGFPSTAGDITYIDYLFLGDYVDRGQHSLETITLLLALKIEYPENVHLIRGNH 580 (810)
Q Consensus 507 pi~vvGDiHG~~-----~-~L~~~l~~~~~~~~~~~~~~~~~vfLGDyVDRG~~s~evl~ll~~lk~~~p~~v~llrGNH 580 (810)
+|.+++|+|..+ . .|.++++.+.-...+ -+|+.||++++.+...+++..|..+ .+..++++.|||
T Consensus 1 ki~~iSDlH~~~~~~~~~~~l~~~~~~~~~~~~d------~vv~~GDl~~~~~~~~~~~~~l~~~---~~~pv~~v~GNH 71 (239)
T TIGR03729 1 KIAFSSDLHIDLNHFDTEEMLETLAQYLKKQKID------HLHIAGDISNDFQRSLPFIEKLQEL---KGIKVTFNAGNH 71 (239)
T ss_pred CEEEEEeecCCCCCCCHHHHHHHHHHHHHhcCCC------EEEECCccccchhhHHHHHHHHHHh---cCCcEEEECCCC
Confidence 478999999753 2 245555554322222 6888999999876666666555543 334699999999
Q ss_pred ccc
Q 003577 581 EAA 583 (810)
Q Consensus 581 E~~ 583 (810)
|..
T Consensus 72 D~~ 74 (239)
T TIGR03729 72 DML 74 (239)
T ss_pred CCC
Confidence 974
No 103
>cd07390 MPP_AQ1575 Aquifex aeolicus AQ1575 and related proteins, metallophosphatase domain. This family includes bacterial and archeal proteins homologous to AQ1575, an uncharacterized Aquifex aeolicus protein. AQ1575 may play an accessory role in DNA repair, based on the close proximity of its gene to Holliday junction resolvasome genes. The domain present in members of this family belongs to the metallophosphatase (MPP) superfamily. MPPs are functionally diverse, but all share a conserved domain with an active site consisting of two metal ions (usually manganese, iron, or zinc) coordinated with octahedral geometry by a cage of histidine, aspartate, and asparagine residues. The MPP superfamily includes: Mre11/SbcD-like exonucleases, Dbr1-like RNA lariat debranching enzymes, YfcE-like phosphodiesterases, purple acid phosphatases (PAPs), YbbF-like UDP-2,3-diacylglucosamine hydrolases, and acid sphingomyelinases (ASMases). The conserved domain is a double beta-sheet sandwich with a d
Probab=96.95 E-value=0.0035 Score=61.98 Aligned_cols=40 Identities=35% Similarity=0.525 Sum_probs=29.7
Q ss_pred eEEEeccccCCCCChHHHHHHHHHHhhcCCCcEEEecCCccccch
Q 003577 541 DYLFLGDYVDRGQHSLETITLLLALKIEYPENVHLIRGNHEAADI 585 (810)
Q Consensus 541 ~~vfLGDyVDRG~~s~evl~ll~~lk~~~p~~v~llrGNHE~~~~ 585 (810)
.+|++||++++|..+.. +.++.++ +..+++++||||....
T Consensus 45 ~vi~~GDl~~~~~~~~~-~~~l~~~----~~~~~~v~GNHD~~~~ 84 (168)
T cd07390 45 TVYHLGDFSFGGKAGTE-LELLSRL----NGRKHLIKGNHDSSLE 84 (168)
T ss_pred EEEEeCCCCCCCChHHH-HHHHHhC----CCCeEEEeCCCCchhh
Confidence 79999999999987644 4444333 3569999999997543
No 104
>COG0622 Predicted phosphoesterase [General function prediction only]
Probab=96.93 E-value=0.042 Score=54.33 Aligned_cols=64 Identities=17% Similarity=0.273 Sum_probs=42.2
Q ss_pred CeEEEecCCCCHHHHHHHHHHhCCCCCCCCcceeeEEEeccccCCCCChHHHHHHHHHHhhcCCCcEEEecCCccccc
Q 003577 507 PVKVFGDLHGQFGDLMRLFDEYGFPSTAGDITYIDYLFLGDYVDRGQHSLETITLLLALKIEYPENVHLIRGNHEAAD 584 (810)
Q Consensus 507 pi~vvGDiHG~~~~L~~~l~~~~~~~~~~~~~~~~~vfLGDyVDRG~~s~evl~ll~~lk~~~p~~v~llrGNHE~~~ 584 (810)
.+.|++|.||...+..+..+.......+ -+|.+||++...... +|......+++.++||.|...
T Consensus 3 ~ilviSDtH~~~~~~~~~~~~~~~~~~d------~vih~GD~~~~~~~~--------~l~~~~~~~i~~V~GN~D~~~ 66 (172)
T COG0622 3 KILVISDTHGPLRAIEKALKIFNLEKVD------AVIHAGDSTSPFTLD--------ALEGGLAAKLIAVRGNCDGEV 66 (172)
T ss_pred EEEEEeccCCChhhhhHHHHHhhhcCCC------EEEECCCcCCccchH--------HhhcccccceEEEEccCCCcc
Confidence 4889999999996555554444333322 678899999865422 111102368999999999743
No 105
>PRK04036 DNA polymerase II small subunit; Validated
Probab=96.84 E-value=0.0059 Score=70.95 Aligned_cols=119 Identities=17% Similarity=0.155 Sum_probs=61.2
Q ss_pred CCeEEEecCC-CCH----HHHHHHHHHhC-CCCCCC--CcceeeEEEeccccCC-CCCh---------------HHHHHH
Q 003577 506 APVKVFGDLH-GQF----GDLMRLFDEYG-FPSTAG--DITYIDYLFLGDYVDR-GQHS---------------LETITL 561 (810)
Q Consensus 506 ~pi~vvGDiH-G~~----~~L~~~l~~~~-~~~~~~--~~~~~~~vfLGDyVDR-G~~s---------------~evl~l 561 (810)
..+++++||| |.- ..+.++++.+. ..+... ...-..+|++||+||. |.+. -++..+
T Consensus 244 ~~i~~ISDlHlgs~~~~~~~l~~li~~L~g~~~~~~~~~~~~d~lVIaGDivd~~~~~p~~~~~~~~~~~~~~~~~l~~~ 323 (504)
T PRK04036 244 VYAVFISDVHVGSKEFLEDAFEKFIDWLNGEVGNEEEIASRVKYLIIAGDLVDGIGIYPGQEEELEIVDIYEQYEAAAEY 323 (504)
T ss_pred cEEEEEcccCCCCcchhHHHHHHHHHHHhCCCccchhhhhcCCEEEEeCcccccccCCccchhhccchhhHHHHHHHHHH
Confidence 4689999999 653 22344444332 221100 0001278899999994 3211 134445
Q ss_pred HHHHhhcCCCcEEEecCCccccchhhccCChHHHHHh-hCCCCccccccccccccccCceeEEEcC-cEEEecCCc
Q 003577 562 LLALKIEYPENVHLIRGNHEAADINALFGFRLECIER-MGENDGIWAWTRFNQLFNCLPLAALIEK-KIICMHGGI 635 (810)
Q Consensus 562 l~~lk~~~p~~v~llrGNHE~~~~~~~~gf~~e~~~~-~~~~~~~~~~~~~~~~f~~lPla~~i~~-~il~vHgGi 635 (810)
|..+. ..-.|++++||||.........-..+++.. +.. .-..++.. |....+++ +++++||-.
T Consensus 324 L~~L~--~~i~V~~ipGNHD~~~~~lPQ~~l~~~l~~~l~~--------~~v~~lsN-P~~i~l~G~~iLl~HG~~ 388 (504)
T PRK04036 324 LKQIP--EDIKIIISPGNHDAVRQAEPQPAFPEEIRSLFPE--------HNVTFVSN-PALVNLHGVDVLIYHGRS 388 (504)
T ss_pred HHhhh--cCCeEEEecCCCcchhhccCCCCccHHHHHhcCc--------CCeEEecC-CeEEEECCEEEEEECCCC
Confidence 55443 223699999999975533222111222222 211 11233444 65555554 788999865
No 106
>TIGR01640 F_box_assoc_1 F-box protein interaction domain. This model describes a large family of plant domains, with several hundred members in Arabidopsis thaliana. Most examples are found C-terminal to an F-box (pfam00646), a 60 amino acid motif involved in ubiquitination of target proteins to mark them for degradation. Two-hybid experiments support the idea that most members are interchangeable F-box subunits of SCF E3 complexes. Some members have two copies of this domain.
Probab=96.83 E-value=0.22 Score=51.68 Aligned_cols=200 Identities=8% Similarity=0.064 Sum_probs=101.1
Q ss_pred eEEEecCCCcEEEecCCCCCCcccccc-EEEEEC----C-EEEEECccCCCCCccCcEEEEEccCCceEEEEEeecCCCC
Q 003577 2 MFSLENGPAGVCRIRPAGEPPSPRAAH-AAAAVG----T-MVVFQGGIGPAGHSTDDLYVLDLTNDKFKWHRVVVQGQGP 75 (810)
Q Consensus 2 l~~~~~~t~~W~~l~~~g~~P~~R~~h-aa~~~~----~-~lyv~GG~~~~~~~~~dl~~lDl~t~~~~W~~v~~~g~~P 75 (810)
++..|+.|.+|..|++...++.....+ .+.-++ . +|+-+..... ......+.+|++.++. |+.+... ++
T Consensus 16 ~~V~NP~T~~~~~LP~~~~~~~~~~~~~~~~G~d~~~~~YKVv~~~~~~~-~~~~~~~~Vys~~~~~--Wr~~~~~--~~ 90 (230)
T TIGR01640 16 LVVWNPSTGQSRWLPTPKSRRSNKESDTYFLGYDPIEKQYKVLCFSDRSG-NRNQSEHQVYTLGSNS--WRTIECS--PP 90 (230)
T ss_pred EEEECCCCCCEEecCCCCCcccccccceEEEeecccCCcEEEEEEEeecC-CCCCccEEEEEeCCCC--ccccccC--CC
Confidence 577899999999986422111111111 122222 1 5655544321 1133567899999854 9987632 22
Q ss_pred CcccccEEEEECCcEEEEEccCCCCCCCCcEEEEecCCCCcEEEE-ecCCCCCCCccc----ceEEEEeCCcEEEEEccc
Q 003577 76 GPRYGHVMDLVSQRYLVSVSGNDGKRVLSDAWALDTAQKPYVWQR-LNPEGDRPSARM----YATASARSDGMFLLCGGR 150 (810)
Q Consensus 76 ~~R~~Hs~~~v~~~~l~VfGG~~g~~~~ndv~~yd~~~~~~~W~~-i~~~g~~P~~R~----~hsa~~~~~~~l~v~GG~ 150 (810)
........+.+++. +|-+.-.........+..||+.++ +|+. ++. |..+. ....+... +.+.+....
T Consensus 91 ~~~~~~~~v~~~G~-lyw~~~~~~~~~~~~IvsFDl~~E--~f~~~i~~----P~~~~~~~~~~~L~~~~-G~L~~v~~~ 162 (230)
T TIGR01640 91 HHPLKSRGVCINGV-LYYLAYTLKTNPDYFIVSFDVSSE--RFKEFIPL----PCGNSDSVDYLSLINYK-GKLAVLKQK 162 (230)
T ss_pred CccccCCeEEECCE-EEEEEEECCCCCcEEEEEEEcccc--eEeeeeec----CccccccccceEEEEEC-CEEEEEEec
Confidence 21222225556654 544442221111125889999999 8884 532 22221 22333444 555554433
Q ss_pred CCCCCccccEEEEEeCCCCeEEEEeCCCCCCCcccce----EEEEECCEEEEEcccCCCCCCCCCCceEEEEECCCC
Q 003577 151 DASGAPLADAYGLLMHRNGQWEWTLAPGVAPSPRYQH----AAVFVGARLHVTGGALRGGRAIEGEAAVAVLDTAAG 223 (810)
Q Consensus 151 ~~~g~~l~d~~~l~~~~~~~W~~~~~~g~~P~~R~~h----sav~~~~~l~V~GG~~~~~~~~~~~~~l~~yD~~t~ 223 (810)
... ..-++|.+....+..|+..-.-...+.+.... ..+.-++++++.... ... --+..||++++
T Consensus 163 ~~~--~~~~IWvl~d~~~~~W~k~~~i~~~~~~~~~~~~~~~~~~~~g~I~~~~~~-~~~------~~~~~y~~~~~ 230 (230)
T TIGR01640 163 KDT--NNFDLWVLNDAGKQEWSKLFTVPIPPLPDLVDDNFLSGFTDKGEIVLCCED-ENP------FYIFYYNVGEN 230 (230)
T ss_pred CCC--CcEEEEEECCCCCCceeEEEEEcCcchhhhhhheeEeEEeeCCEEEEEeCC-CCc------eEEEEEeccCC
Confidence 221 12589999866566788654332222222211 223346777776542 101 12788888764
No 107
>cd00844 MPP_Dbr1_N Dbr1 RNA lariat debranching enzyme, N-terminal metallophosphatase domain. Dbr1 is an RNA lariat debranching enzyme that hydrolyzes 2'-5' phosphodiester bonds at the branch points of excised intron lariats. This alignment model represents the N-terminal metallophosphatase domain of Dbr1. This domain belongs to the metallophosphatase (MPP) superfamily. MPPs are functionally diverse, but all share a conserved domain with an active site consisting of two metal ions (usually manganese, iron, or zinc) coordinated with octahedral geometry by a cage of histidine, aspartate, and asparagine residues. The MPP superfamily includes: Mre11/SbcD-like exonucleases, Dbr1-like RNA lariat debranching enzymes, YfcE-like phosphodiesterases, purple acid phosphatases (PAPs), YbbF-like UDP-2,3-diacylglucosamine hydrolases, and acid sphingomyelinases (ASMases). The conserved domain is a double beta-sheet sandwich with a di-metal active site made up of residues located at the C-terminal s
Probab=96.75 E-value=0.0032 Score=66.69 Aligned_cols=70 Identities=20% Similarity=0.308 Sum_probs=43.8
Q ss_pred eEEEecCCCCHHHHHHHHHHhCC---CCCCCCcceeeEEEeccccCCCC-ChHHHHH------HHHHH------hhcCCC
Q 003577 508 VKVFGDLHGQFGDLMRLFDEYGF---PSTAGDITYIDYLFLGDYVDRGQ-HSLETIT------LLLAL------KIEYPE 571 (810)
Q Consensus 508 i~vvGDiHG~~~~L~~~l~~~~~---~~~~~~~~~~~~vfLGDyVDRG~-~s~evl~------ll~~l------k~~~p~ 571 (810)
|+|+||+||+++.+.+.++.... .+.+ -+|++||+-..+. ...+.+. -+..+ ..+.|-
T Consensus 1 i~v~Gd~HG~~~~~~~~~~~~~~~~~~~~D------~lI~~GDf~~~~~~~d~~~~~~p~k~~~~~~f~~~~~g~~~~p~ 74 (262)
T cd00844 1 IAVEGCCHGELDKIYETLEKIEKKEGTKVD------LLICCGDFQAVRNEADLKCMAVPPKYRKMGDFYKYYSGEKKAPI 74 (262)
T ss_pred CEEEecCCccHHHHHHHHHHHHHhcCCCCc------EEEEcCCCCCcCCcchhhhhccchhhhhhhhHHHHhcCCccCCe
Confidence 68999999999888775544321 1122 5888999975443 3444332 11111 223566
Q ss_pred cEEEecCCcccc
Q 003577 572 NVHLIRGNHEAA 583 (810)
Q Consensus 572 ~v~llrGNHE~~ 583 (810)
-+++|-||||..
T Consensus 75 ~t~fi~GNHE~~ 86 (262)
T cd00844 75 LTIFIGGNHEAS 86 (262)
T ss_pred eEEEECCCCCCH
Confidence 689999999964
No 108
>cd00840 MPP_Mre11_N Mre11 nuclease, N-terminal metallophosphatase domain. Mre11 (also known as SbcD in Escherichia coli) is a subunit of the MRX protein complex. This complex includes: Mre11, Rad50, and Xrs2/Nbs1, and plays a vital role in several nuclear processes including DNA double-strand break repair, telomere length maintenance, cell cycle checkpoint control, and meiotic recombination, in eukaryotes. During double-strand break repair, the MRX complex is required to hold the two ends of a broken chromosome together. In vitro studies show that Mre11 has 3'-5' exonuclease activity on dsDNA templates and endonuclease activity on dsDNA and ssDNA templates. In addition to the N-terminal phosphatase domain, the eukaryotic MRE11 members of this family have a C-terminal DNA binding domain (not included in this alignment model). MRE11-like proteins are found in prokaryotes and archaea was well as in eukaryotes. Mre11 belongs to the metallophosphatase (MPP) superfamily. MPPs are functi
Probab=96.72 E-value=0.0032 Score=64.87 Aligned_cols=74 Identities=22% Similarity=0.204 Sum_probs=45.7
Q ss_pred CeEEEecCC-CCH--------------HHHHHHHHHhCCCCCCCCcceeeEEEeccccCCCCChHHHHHHHHHHhhcC--
Q 003577 507 PVKVFGDLH-GQF--------------GDLMRLFDEYGFPSTAGDITYIDYLFLGDYVDRGQHSLETITLLLALKIEY-- 569 (810)
Q Consensus 507 pi~vvGDiH-G~~--------------~~L~~~l~~~~~~~~~~~~~~~~~vfLGDyVDRG~~s~evl~ll~~lk~~~-- 569 (810)
+++.++|+| |.. ..|.++++.......+ .+|+.||++|....+.+.+..+..+-.+.
T Consensus 1 ~i~~~sD~Hlg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d------~i~~~GD~~~~~~~~~~~~~~~~~~~~~~~~ 74 (223)
T cd00840 1 RFLHTADWHLGKPLKGLSRDRRREDQFEAFEEIVELAIEEKVD------FVLIAGDLFDSNNPSPEALELLIEALRRLKE 74 (223)
T ss_pred CeEEeccccCCccccCcCcccchHHHHHHHHHHHHHHHhcCCC------EEEECCcccCCCCCCHHHHHHHHHHHHHHHH
Confidence 478899999 322 2345555544322222 68899999998876655444433322222
Q ss_pred -CCcEEEecCCccccchh
Q 003577 570 -PENVHLIRGNHEAADIN 586 (810)
Q Consensus 570 -p~~v~llrGNHE~~~~~ 586 (810)
.-.++++.||||.....
T Consensus 75 ~~~~v~~~~GNHD~~~~~ 92 (223)
T cd00840 75 AGIPVFIIAGNHDSPSRL 92 (223)
T ss_pred CCCCEEEecCCCCCcccc
Confidence 34699999999976543
No 109
>cd07396 MPP_Nbla03831 Homo sapiens Nbla03831 and related proteins, metallophosphatase domain. Nbla03831 (also known as LOC56985) is an uncharacterized Homo sapiens protein with a domain that belongs to the metallophosphatase (MPP) superfamily. MPPs are functionally diverse, but all share a conserved domain with an active site consisting of two metal ions (usually manganese, iron, or zinc) coordinated with octahedral geometry by a cage of histidine, aspartate, and asparagine residues. The MPP superfamily includes: Mre11/SbcD-like exonucleases, Dbr1-like RNA lariat debranching enzymes, YfcE-like phosphodiesterases, purple acid phosphatases (PAPs), YbbF-like UDP-2,3-diacylglucosamine hydrolases, and acid sphingomyelinases (ASMases). The conserved domain is a double beta-sheet sandwich with a di-metal active site made up of residues located at the C-terminal side of the sheets. This domain is thought to allow for productive metal coordination.
Probab=96.71 E-value=0.0045 Score=66.08 Aligned_cols=73 Identities=22% Similarity=0.316 Sum_probs=46.5
Q ss_pred CeEEEecCC-C------------CHHHHHHHHHHhCCCCCCCCcceeeEEEeccccCCCCC-hHHHHHHHHHHhhcCCCc
Q 003577 507 PVKVFGDLH-G------------QFGDLMRLFDEYGFPSTAGDITYIDYLFLGDYVDRGQH-SLETITLLLALKIEYPEN 572 (810)
Q Consensus 507 pi~vvGDiH-G------------~~~~L~~~l~~~~~~~~~~~~~~~~~vfLGDyVDRG~~-s~evl~ll~~lk~~~p~~ 572 (810)
++.+++|+| + ....|.++++.+.....+ -+|++||+++.|.. +.+-+..++++-...+-.
T Consensus 2 r~~~iSD~H~~~~~~~~~~~~~~~~~~l~~~i~~i~~~~~d------~vv~~GDlv~~~~~~~~~~~~~~~~~l~~l~~p 75 (267)
T cd07396 2 RFGIIADIQYADEDDTRPRYYRNSLEKLEEAVEEWNRESLD------FVVQLGDIIDGDNARAEEALDAVLAILDRLKGP 75 (267)
T ss_pred eEEEEeccccccCCCcccchHHHhHHHHHHHHHHHHcCCCC------EEEECCCeecCCCchHHHHHHHHHHHHHhcCCC
Confidence 478999999 2 245566667666422222 58889999998873 223333333332233346
Q ss_pred EEEecCCccccch
Q 003577 573 VHLIRGNHEAADI 585 (810)
Q Consensus 573 v~llrGNHE~~~~ 585 (810)
++++.||||....
T Consensus 76 ~~~v~GNHD~~~~ 88 (267)
T cd07396 76 VHHVLGNHDLYNP 88 (267)
T ss_pred EEEecCccccccc
Confidence 9999999998543
No 110
>PF07250 Glyoxal_oxid_N: Glyoxal oxidase N-terminus; InterPro: IPR009880 This entry represents the N terminus (approximately 300 residues) of a number of plant and fungal glyoxal oxidase enzymes. Glyoxal oxidase catalyses the oxidation of aldehydes to carboxylic acids, coupled with reduction of dioxygen to hydrogen peroxide. It is an essential component of the extracellular lignin degradation pathways of the wood-rot fungus Phanerochaete chrysosporium [].
Probab=96.65 E-value=0.028 Score=58.54 Aligned_cols=134 Identities=10% Similarity=0.163 Sum_probs=81.6
Q ss_pred EEecCCCcEEEecCCCCCCccccccEEEEECCEEEEECccCCCCCccCcEEEEEccC--CceEEEEEeecCCCCCccccc
Q 003577 4 SLENGPAGVCRIRPAGEPPSPRAAHAAAAVGTMVVFQGGIGPAGHSTDDLYVLDLTN--DKFKWHRVVVQGQGPGPRYGH 81 (810)
Q Consensus 4 ~~~~~t~~W~~l~~~g~~P~~R~~haa~~~~~~lyv~GG~~~~~~~~~dl~~lDl~t--~~~~W~~v~~~g~~P~~R~~H 81 (810)
.||+.+++++.+....+ .=.++|+. .-++.+++.||...+. ..+-.|+..+ ...+|..... .+-.+|+..
T Consensus 50 ~yD~~tn~~rpl~v~td--~FCSgg~~-L~dG~ll~tGG~~~G~---~~ir~~~p~~~~~~~~w~e~~~--~m~~~RWYp 121 (243)
T PF07250_consen 50 EYDPNTNTFRPLTVQTD--TFCSGGAF-LPDGRLLQTGGDNDGN---KAIRIFTPCTSDGTCDWTESPN--DMQSGRWYP 121 (243)
T ss_pred EEecCCCcEEeccCCCC--CcccCcCC-CCCCCEEEeCCCCccc---cceEEEecCCCCCCCCceECcc--cccCCCccc
Confidence 57889999988865432 11334432 3357888999986533 3455566543 1245887653 377889999
Q ss_pred EEEEECCcEEEEEccCCCCCCCCcEEEEecC----CCCcEEEEecCCCCCCCcccceEEEEeCCcEEEEEccc
Q 003577 82 VMDLVSQRYLVSVSGNDGKRVLSDAWALDTA----QKPYVWQRLNPEGDRPSARMYATASARSDGMFLLCGGR 150 (810)
Q Consensus 82 s~~~v~~~~l~VfGG~~g~~~~ndv~~yd~~----~~~~~W~~i~~~g~~P~~R~~hsa~~~~~~~l~v~GG~ 150 (810)
+.+.+.++.++|+||.... .+.|-+. ..++.|.-+....+.-..-.|-.+.+..++.+|+++.+
T Consensus 122 T~~~L~DG~vlIvGG~~~~-----t~E~~P~~~~~~~~~~~~~l~~~~~~~~~nlYP~~~llPdG~lFi~an~ 189 (243)
T PF07250_consen 122 TATTLPDGRVLIVGGSNNP-----TYEFWPPKGPGPGPVTLPFLSQTSDTLPNNLYPFVHLLPDGNLFIFANR 189 (243)
T ss_pred cceECCCCCEEEEeCcCCC-----cccccCCccCCCCceeeecchhhhccCccccCceEEEcCCCCEEEEEcC
Confidence 9999988889999998732 2333232 12234433322111111233445556788889999975
No 111
>cd07391 MPP_PF1019 Pyrococcus furiosus PF1019 and related proteins, metallophosphatase domain. This family includes bacterial and archeal proteins homologous to PF1019, an uncharacterized Pyrococcus furiosus protein. The domain present in members of this family belongs to the metallophosphatase (MPP) superfamily. MPPs are functionally diverse, but all share a conserved domain with an active site consisting of two metal ions (usually manganese, iron, or zinc) coordinated with octahedral geometry by a cage of histidine, aspartate, and asparagine residues. The MPP superfamily includes: Mre11/SbcD-like exonucleases, Dbr1-like RNA lariat debranching enzymes, YfcE-like phosphodiesterases, purple acid phosphatases (PAPs), YbbF-like UDP-2,3-diacylglucosamine hydrolases, and acid sphingomyelinases (ASMases). The conserved domain is a double beta-sheet sandwich with a di-metal active site made up of residues located at the C-terminal side of the sheets. This domain is thought to allow for pro
Probab=96.58 E-value=0.0048 Score=61.20 Aligned_cols=44 Identities=25% Similarity=0.244 Sum_probs=27.4
Q ss_pred eEEEeccccCCCCCh--HHHHHHHHHHhhcCCCcEEEecCCccccc
Q 003577 541 DYLFLGDYVDRGQHS--LETITLLLALKIEYPENVHLIRGNHEAAD 584 (810)
Q Consensus 541 ~~vfLGDyVDRG~~s--~evl~ll~~lk~~~p~~v~llrGNHE~~~ 584 (810)
.+|++||++|..... .+...+-+.......-.+++++||||...
T Consensus 44 ~lii~GDl~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~GNHD~~~ 89 (172)
T cd07391 44 RLIILGDLKHSFGGLSRQEFEEVAFLRLLAKDVDVILIRGNHDGGL 89 (172)
T ss_pred EEEEeCcccccccccCHHHHHHHHHHHhccCCCeEEEEcccCccch
Confidence 799999999865432 22222111112234457999999999743
No 112
>cd07395 MPP_CSTP1 Homo sapiens CSTP1 and related proteins, metallophosphatase domain. CSTP1 (complete S-transactivated protein 1) is an uncharacterized Homo sapiens protein with a metallophosphatase domain, that is transactivated by the complete S protein of hepatitis B virus. CSTP1 belongs to the metallophosphatase (MPP) superfamily. MPPs are functionally diverse, but all share a conserved domain with an active site consisting of two metal ions (usually manganese, iron, or zinc) coordinated with octahedral geometry by a cage of histidine, aspartate, and asparagine residues. The MPP superfamily includes: Mre11/SbcD-like exonucleases, Dbr1-like RNA lariat debranching enzymes, YfcE-like phosphodiesterases, purple acid phosphatases (PAPs), YbbF-like UDP-2,3-diacylglucosamine hydrolases, and acid sphingomyelinases (ASMases). The conserved domain is a double beta-sheet sandwich with a di-metal active site made up of residues located at the C-terminal side of the sheets. This domain is th
Probab=96.52 E-value=0.08 Score=56.20 Aligned_cols=59 Identities=17% Similarity=0.110 Sum_probs=34.2
Q ss_pred HHHHHHHHHhcCCcEEEEeccccccceEEecCCeEEEEEccCCCCCCCCCeEE-EEEEcCcc
Q 003577 692 PDRVSDFCKRNKLQLIIRAHECVMDGFERFAQGQLITLFSATNYCGTANNAGA-ILVVGRGL 752 (810)
Q Consensus 692 ~~~~~~fl~~~~l~~iiR~H~~~~~G~~~~~~~~~itvfSa~~y~~~~~n~ga-~l~~~~~~ 752 (810)
...+.+.|++.++++++-||.-....... +|--.-+-.++.++-..++.|. ++.++++.
T Consensus 195 ~~~l~~ll~~~~V~~v~~GH~H~~~~~~~--~g~~~~~~~~~~~~~~~~~~g~~~~~v~~~~ 254 (262)
T cd07395 195 RKPLLDKFKKAGVKAVFSGHYHRNAGGRY--GGLEMVVTSAIGAQLGNDKSGLRIVKVTEDK 254 (262)
T ss_pred HHHHHHHHHhcCceEEEECccccCCceEE--CCEEEEEcCceecccCCCCCCcEEEEECCCc
Confidence 45677888999999999999887665432 3321112233333333334443 56665443
No 113
>cd07398 MPP_YbbF-LpxH Escherichia coli YbbF/LpxH and related proteins, metallophosphatase domain. YbbF/LpxH is an Escherichia coli UDP-2,3-diacylglucosamine hydrolase thought to catalyze the fourth step of lipid A biosynthesis, in which a precursor UDP-2,3-diacylglucosamine is hydrolyzed to yield 2,3-diacylglucosamine 1-phosphate and UMP. YbbF belongs to the metallophosphatase (MPP) superfamily. MPPs are functionally diverse, but all share a conserved domain with an active site consisting of two metal ions (usually manganese, iron, or zinc) coordinated with octahedral geometry by a cage of histidine, aspartate, and asparagine residues. The MPP superfamily includes: Mre11/SbcD-like exonucleases, Dbr1-like RNA lariat debranching enzymes, YfcE-like phosphodiesterases, purple acid phosphatases (PAPs), YbbF-like UDP-2,3-diacylglucosamine hydrolases, and acid sphingomyelinases (ASMases). The conserved domain is a double beta-sheet sandwich with a di-metal active site made up of residues l
Probab=96.49 E-value=0.0066 Score=62.37 Aligned_cols=27 Identities=15% Similarity=0.174 Sum_probs=21.4
Q ss_pred eCHHHHHHHHHhcCCcEEEEecccccc
Q 003577 690 FGPDRVSDFCKRNKLQLIIRAHECVMD 716 (810)
Q Consensus 690 fg~~~~~~fl~~~~l~~iiR~H~~~~~ 716 (810)
..+..+.+.+++.+.+.+|-||.-...
T Consensus 176 ~~~~~~~~~~~~~~~~~~i~GH~H~~~ 202 (217)
T cd07398 176 VFEEAVARLARRKGVDGVICGHTHRPA 202 (217)
T ss_pred HHHHHHHHHHHhcCCCEEEECCCCCCC
Confidence 355667778889999999999976643
No 114
>PHA02546 47 endonuclease subunit; Provisional
Probab=96.40 E-value=0.0069 Score=66.99 Aligned_cols=72 Identities=21% Similarity=0.317 Sum_probs=44.5
Q ss_pred CeEEEecCC-C-----------CHHHHHHHHHHhCCCCCCCCcceeeEEEeccccCCC-CChHHHHHHHHH--Hh--hcC
Q 003577 507 PVKVFGDLH-G-----------QFGDLMRLFDEYGFPSTAGDITYIDYLFLGDYVDRG-QHSLETITLLLA--LK--IEY 569 (810)
Q Consensus 507 pi~vvGDiH-G-----------~~~~L~~~l~~~~~~~~~~~~~~~~~vfLGDyVDRG-~~s~evl~ll~~--lk--~~~ 569 (810)
+++.++|+| | +...|.++++.+.-...+ -+|+.||++|+. +.+.+++.++.. ++ ...
T Consensus 2 KilhiSD~HLG~~~~~~~~~~~~~~~l~~ii~~a~~~~vD------~VliaGDlfD~~~~~~~~~~~~~~~~l~~~L~~~ 75 (340)
T PHA02546 2 KILLIGDQHLGVRKDDPWFQNYQLKFIKQAIEYSKAHGIT------TWIQLGDTFDVRKAITQNTMNFVREKIFDLLKEA 75 (340)
T ss_pred eEEEEeeecCCCcCCChhhHHHHHHHHHHHHHHHHHcCCC------EEEECCcccCCCCCCCHHHHHHHHHHHHHHHHHC
Confidence 578899999 4 223445554444322112 688899999985 455555544433 21 123
Q ss_pred CCcEEEecCCccccc
Q 003577 570 PENVHLIRGNHEAAD 584 (810)
Q Consensus 570 p~~v~llrGNHE~~~ 584 (810)
+-.+++|.||||...
T Consensus 76 gi~v~~I~GNHD~~~ 90 (340)
T PHA02546 76 GITLHVLVGNHDMYY 90 (340)
T ss_pred CCeEEEEccCCCccc
Confidence 456999999999743
No 115
>cd07402 MPP_GpdQ Enterobacter aerogenes GpdQ and related proteins, metallophosphatase domain. GpdQ (glycerophosphodiesterase Q, also known as Rv0805 in Mycobacterium tuberculosis) is a binuclear metallophosphoesterase from Enterobacter aerogenes that catalyzes the hydrolysis of mono-, di-, and triester substrates, including some organophosphate pesticides and products of the degradation of nerve agents. The GpdQ homolog, Rv0805, has 2',3'-cyclic nucleotide phosphodiesterase activity. GpdQ and Rv0805 belong to the metallophosphatase (MPP) superfamily. MPPs are functionally diverse, but all share a conserved domain with an active site consisting of two metal ions (usually manganese, iron, or zinc) coordinated with octahedral geometry by a cage of histidine, aspartate, and asparagine residues. The MPP superfamily includes: Mre11/SbcD-like exonucleases, Dbr1-like RNA lariat debranching enzymes, YfcE-like phosphodiesterases, purple acid phosphatases (PAPs), YbbF-like UDP-2,3-diacylglucosa
Probab=96.31 E-value=0.013 Score=61.31 Aligned_cols=69 Identities=25% Similarity=0.289 Sum_probs=43.1
Q ss_pred CeEEEecCCCC------------HHHHHHHHHHhCCC--CCCCCcceeeEEEeccccCCCCChHHHHHHHHHHhhcCCCc
Q 003577 507 PVKVFGDLHGQ------------FGDLMRLFDEYGFP--STAGDITYIDYLFLGDYVDRGQHSLETITLLLALKIEYPEN 572 (810)
Q Consensus 507 pi~vvGDiHG~------------~~~L~~~l~~~~~~--~~~~~~~~~~~vfLGDyVDRG~~s~evl~ll~~lk~~~p~~ 572 (810)
++.+++|||=. ...|.++++.+.-. ..+ -+|++||+++.|... ....+.++..+.+-.
T Consensus 1 r~~~iSDlH~~~~~~~~~~~~~~~~~l~~~~~~i~~~~~~~d------~vi~~GDl~~~~~~~--~~~~~~~~l~~~~~p 72 (240)
T cd07402 1 LLAQISDLHLRADGEGALLGVDTAASLEAVLAHINALHPRPD------LVLVTGDLTDDGSPE--SYERLRELLAALPIP 72 (240)
T ss_pred CEEEEeCCccCCCCcceecCcCHHHHHHHHHHHHHhcCCCCC------EEEECccCCCCCCHH--HHHHHHHHHhhcCCC
Confidence 47899999944 34566677655432 112 588899999987532 222222222222456
Q ss_pred EEEecCCcccc
Q 003577 573 VHLIRGNHEAA 583 (810)
Q Consensus 573 v~llrGNHE~~ 583 (810)
++.++||||..
T Consensus 73 ~~~v~GNHD~~ 83 (240)
T cd07402 73 VYLLPGNHDDR 83 (240)
T ss_pred EEEeCCCCCCH
Confidence 89999999974
No 116
>cd07386 MPP_DNA_pol_II_small_archeal_C archeal DNA polymerase II, small subunit, C-terminal metallophosphatase domain. The small subunit of the archeal DNA polymerase II contains a C-terminal metallophosphatase domain. This domain is thought to be functionally active because the active site residues required for phosphoesterase activity in other members of this superfamily are intact. The archeal replicative DNA polymerases are thought to possess intrinsic phosphatase activity that hydrolyzes the pyrophosphate released during nucleotide polymerization. This domain belongs to the metallophosphatase (MPP) superfamily. MPPs are functionally diverse, but all share a conserved domain with an active site consisting of two metal ions (usually manganese, iron, or zinc) coordinated with octahedral geometry by a cage of histidine, aspartate, and asparagine residues. The MPP superfamily includes: Mre11/SbcD-like exonucleases, Dbr1-like RNA lariat debranching enzymes, YfcE-like phosphodiestera
Probab=96.15 E-value=0.047 Score=57.32 Aligned_cols=72 Identities=19% Similarity=0.222 Sum_probs=38.3
Q ss_pred EEEecCC--CCH---HHHHHHHHHhC-CCCCCCCcceeeEEEeccccCCCC-----C-------hHH----HHHHHHHHh
Q 003577 509 KVFGDLH--GQF---GDLMRLFDEYG-FPSTAGDITYIDYLFLGDYVDRGQ-----H-------SLE----TITLLLALK 566 (810)
Q Consensus 509 ~vvGDiH--G~~---~~L~~~l~~~~-~~~~~~~~~~~~~vfLGDyVDRG~-----~-------s~e----vl~ll~~lk 566 (810)
++++|+| +.. ..+..+++.+. ..+.. .....+|++||++|+.. . ..+ +..+|.+|.
T Consensus 2 ~~iSDlHl~~~~~~~~~~~~l~~~l~~~~~~~--~~~d~lvi~GDl~d~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~ 79 (243)
T cd07386 2 VFISDVHVGSKTFLEDAFEKFVRWLNGEDDSA--SRVKYLIIAGDLVDGIGVYPGQEEELEILDIYEQYEEAAEYLSDVP 79 (243)
T ss_pred EEecccCCCchhhhHHHHHHHHHHHcCCcccc--cCccEEEEeCCcccccccCCcchhhhhhhhHHHHHHHHHHHHHhcc
Confidence 6899999 432 22233343332 21100 00116888999999731 0 111 223333333
Q ss_pred hcCCCcEEEecCCccccc
Q 003577 567 IEYPENVHLIRGNHEAAD 584 (810)
Q Consensus 567 ~~~p~~v~llrGNHE~~~ 584 (810)
..-.|+++.||||...
T Consensus 80 --~~~~v~~ipGNHD~~~ 95 (243)
T cd07386 80 --SHIKIIIIPGNHDAVR 95 (243)
T ss_pred --cCCeEEEeCCCCCccc
Confidence 2346999999999753
No 117
>TIGR00024 SbcD_rel_arch putative phosphoesterase, SbcD/Mre11-related. Members of this uncharacterized family share a motif approximating DXH(X25)GDXXD(X25)GNHD as found in several phosphoesterases, including the nucleases SbcD and Mre11. SbcD is a subunit of the SbcCD nuclease of E. coli that can cleave DNA hairpins to unblock stalled DNA replication. All members of this family are archaeal.
Probab=96.11 E-value=0.018 Score=59.65 Aligned_cols=40 Identities=23% Similarity=0.230 Sum_probs=26.7
Q ss_pred eEEEeccccCCCCCh---HHHHHHHHHHhhcCCCcEEEecCCccccc
Q 003577 541 DYLFLGDYVDRGQHS---LETITLLLALKIEYPENVHLIRGNHEAAD 584 (810)
Q Consensus 541 ~~vfLGDyVDRG~~s---~evl~ll~~lk~~~p~~v~llrGNHE~~~ 584 (810)
.+|++||+++..... -++..++..+ ...+++++||||...
T Consensus 61 ~vIi~GDl~h~~~~~~~~~~~~~~l~~~----~~~v~~V~GNHD~~~ 103 (225)
T TIGR00024 61 ALIINGDLKHEFKKGLEWRFIREFIEVT----FRDLILIRGNHDALI 103 (225)
T ss_pred EEEEcCccccccCChHHHHHHHHHHHhc----CCcEEEECCCCCCcc
Confidence 799999999755542 2223333332 247999999999743
No 118
>TIGR00619 sbcd exonuclease SbcD. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=96.11 E-value=0.012 Score=62.19 Aligned_cols=72 Identities=22% Similarity=0.229 Sum_probs=45.2
Q ss_pred CeEEEecCCC-C-----------HHHHHHHHHHhCCCCCCCCcceeeEEEeccccCCCCChHHHH----HHHHHHhhcCC
Q 003577 507 PVKVFGDLHG-Q-----------FGDLMRLFDEYGFPSTAGDITYIDYLFLGDYVDRGQHSLETI----TLLLALKIEYP 570 (810)
Q Consensus 507 pi~vvGDiHG-~-----------~~~L~~~l~~~~~~~~~~~~~~~~~vfLGDyVDRG~~s~evl----~ll~~lk~~~p 570 (810)
+++.++|+|- . +..|.++++.+.-...+ -+|+.||++|+...+.+.. .+|..|+...|
T Consensus 2 kilh~SD~Hlg~~~~~~~~~~~~~~~l~~l~~~~~~~~~D------~lli~GDi~d~~~p~~~~~~~~~~~l~~l~~~~~ 75 (253)
T TIGR00619 2 RILHTSDWHLGKTLEGVSRLAEQKAFLDDLLEFAKAEQID------ALLVAGDVFDTANPPAEAQELFNAFFRNLSDANP 75 (253)
T ss_pred EEEEEhhhcCCCccCCCChHHHHHHHHHHHHHHHHHcCCC------EEEECCccCCCCCCCHHHHHHHHHHHHHHHhcCC
Confidence 4788999993 2 23344454443221111 6888999999987665543 34444444333
Q ss_pred CcEEEecCCccccc
Q 003577 571 ENVHLIRGNHEAAD 584 (810)
Q Consensus 571 ~~v~llrGNHE~~~ 584 (810)
-.++++.||||...
T Consensus 76 i~v~~i~GNHD~~~ 89 (253)
T TIGR00619 76 IPIVVISGNHDSAQ 89 (253)
T ss_pred ceEEEEccCCCChh
Confidence 56999999999753
No 119
>PRK10966 exonuclease subunit SbcD; Provisional
Probab=96.08 E-value=0.015 Score=65.81 Aligned_cols=43 Identities=19% Similarity=0.328 Sum_probs=30.0
Q ss_pred eEEEeccccCCCCChHHHH----HHHHHHhhcCCCcEEEecCCccccc
Q 003577 541 DYLFLGDYVDRGQHSLETI----TLLLALKIEYPENVHLIRGNHEAAD 584 (810)
Q Consensus 541 ~~vfLGDyVDRG~~s~evl----~ll~~lk~~~p~~v~llrGNHE~~~ 584 (810)
-+|+.||++|++..+.+.. .++..|+. .+-.++++.||||...
T Consensus 42 ~viIaGDifD~~~p~~~a~~~~~~~l~~L~~-~~~~v~~I~GNHD~~~ 88 (407)
T PRK10966 42 AIIVAGDIFDTGSPPSYARELYNRFVVNLQQ-TGCQLVVLAGNHDSVA 88 (407)
T ss_pred EEEECCccccCCCCcHHHHHHHHHHHHHHHh-cCCcEEEEcCCCCChh
Confidence 6888999999987654433 33444443 2346999999999754
No 120
>cd08165 MPP_MPPE1 human MPPE1 and related proteins, metallophosphatase domain. MPPE1 is a functionally uncharacterized metallophosphatase domain-containing protein. The MPPE1 gene is located on chromosome 18 and is a candidate susceptibility gene for Bipolar disorder. MPPE1 belongs to the metallophosphatase (MPP) superfamily. MPPs are functionally diverse, but all share a conserved domain with an active site consisting of two metal ions (usually manganese, iron, or zinc) coordinated with octahedral geometry by a cage of histidine, aspartate, and asparagine residues. The MPP superfamily includes: Mre11/SbcD-like exonucleases, Dbr1-like RNA lariat debranching enzymes, YfcE-like phosphodiesterases, purple acid phosphatases (PAPs), YbbF-like UDP-2,3-diacylglucosamine hydrolases, and acid sphingomyelinases (ASMases). The conserved domain is a double beta-sheet sandwich with a di-metal active site made up of residues located at the C-terminal side of the sheets. This domain is thought to
Probab=96.07 E-value=0.0091 Score=58.23 Aligned_cols=44 Identities=27% Similarity=0.326 Sum_probs=27.9
Q ss_pred eEEEeccccCCCCCh-HHHH-HHHHHHhhc---C-CCcEEEecCCccccc
Q 003577 541 DYLFLGDYVDRGQHS-LETI-TLLLALKIE---Y-PENVHLIRGNHEAAD 584 (810)
Q Consensus 541 ~~vfLGDyVDRG~~s-~evl-~ll~~lk~~---~-p~~v~llrGNHE~~~ 584 (810)
.+||+||++|.+... .+.. .++..++.. . .-.++++.||||...
T Consensus 41 ~vv~~GDl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~v~GNHD~~~ 90 (156)
T cd08165 41 VVFVLGDLFDEGKWSTDEEWEDYVERFKKMFGHPPDLPLHVVVGNHDIGF 90 (156)
T ss_pred EEEECCCCCCCCccCCHHHHHHHHHHHHHHhccCCCCeEEEEcCCCCcCC
Confidence 689999999987642 1222 222223222 2 246999999999743
No 121
>PRK11148 cyclic 3',5'-adenosine monophosphate phosphodiesterase; Provisional
Probab=96.03 E-value=0.02 Score=61.41 Aligned_cols=70 Identities=11% Similarity=0.079 Sum_probs=44.5
Q ss_pred CeEEEecCC-C-----------CHHHHHHHHHHhCC-CCCCCCcceeeEEEeccccCCCCChHHHHHHHHHHhhcCCCcE
Q 003577 507 PVKVFGDLH-G-----------QFGDLMRLFDEYGF-PSTAGDITYIDYLFLGDYVDRGQHSLETITLLLALKIEYPENV 573 (810)
Q Consensus 507 pi~vvGDiH-G-----------~~~~L~~~l~~~~~-~~~~~~~~~~~~vfLGDyVDRG~~s~evl~ll~~lk~~~p~~v 573 (810)
.++.++|+| . ....|.++++.+.. .+.-+ -+|+.||++|.|. .+-+..+++.-.+.+..+
T Consensus 16 ~i~~iSD~Hl~~~~~~~~~~~~~~~~l~~~i~~i~~~~~~~D-----~vvitGDl~~~~~--~~~~~~~~~~l~~l~~Pv 88 (275)
T PRK11148 16 RILQITDTHLFADEHETLLGVNTWESYQAVLEAIRAQQHEFD-----LIVATGDLAQDHS--SEAYQHFAEGIAPLRKPC 88 (275)
T ss_pred EEEEEcCcccCCCCCCceeccCHHHHHHHHHHHHHhhCCCCC-----EEEECCCCCCCCC--HHHHHHHHHHHhhcCCcE
Confidence 488999999 1 14567777766532 11111 5888999999874 233333333222345569
Q ss_pred EEecCCcccc
Q 003577 574 HLIRGNHEAA 583 (810)
Q Consensus 574 ~llrGNHE~~ 583 (810)
+++.||||..
T Consensus 89 ~~v~GNHD~~ 98 (275)
T PRK11148 89 VWLPGNHDFQ 98 (275)
T ss_pred EEeCCCCCCh
Confidence 9999999973
No 122
>KOG0918 consensus Selenium-binding protein [Inorganic ion transport and metabolism]
Probab=95.86 E-value=0.0015 Score=70.28 Aligned_cols=209 Identities=9% Similarity=-0.118 Sum_probs=137.4
Q ss_pred eeeEEEeccccCCCCChHHHHHHHHHHhhcCCCcEEEecCCccccchhhccCChHHHHHhhCCCCccccccccccccccC
Q 003577 539 YIDYLFLGDYVDRGQHSLETITLLLALKIEYPENVHLIRGNHEAADINALFGFRLECIERMGENDGIWAWTRFNQLFNCL 618 (810)
Q Consensus 539 ~~~~vfLGDyVDRG~~s~evl~ll~~lk~~~p~~v~llrGNHE~~~~~~~~gf~~e~~~~~~~~~~~~~~~~~~~~f~~l 618 (810)
+...|+|+++++++.+.++.+.+.+..++.|-.+--..+++|+ ..++++.+....-.......+|+..++.+..+
T Consensus 48 ~latVdvdp~s~t~c~vI~r~~~~~~gdelhhsgwn~~ssc~~-----~~~~~R~~LVlp~l~S~riyvid~~~ep~~~~ 122 (476)
T KOG0918|consen 48 YLATVDVDPSSPTYCQVIHRLPMPYLGDELHHSGWNSCSSCHG-----DSSFKRRYLVLPSLNSGRIYVIDVKTEPRKPS 122 (476)
T ss_pred ceeEEecCCCCCcceeeEEEeccCcccchhcccchhhhhhhcc-----CcchhhhheeecccccCceEEEEeccCcCccc
Confidence 3478999999999999999999999999998888999999994 35566666666666666778889999999999
Q ss_pred ceeEEEcCcEEEecCCcCCcccchhhhhcccCCcccCCCchhhhhhccCCCCCCCC--CCCCCcCCCCCceeeeCHHH--
Q 003577 619 PLAALIEKKIICMHGGIGRSIHSVEQIEKLERPITMDAGSIILMDLLWSDPTENDS--IEGLRPNARGPGLVTFGPDR-- 694 (810)
Q Consensus 619 Pla~~i~~~il~vHgGi~~~~~~~~~i~~~~rp~~~~~~~~~~~dllWsdP~~~~~--~~~~~~~~rg~~~~~fg~~~-- 694 (810)
+...+.. +++|.||+..|...+...+..+.-...-+..+ ..+ .|-++.+.+. ...|. .++.. ..||-|.
T Consensus 123 l~k~i~~-~il~~~~l~~Pht~hcla~g~v~vs~lGd~~g--n~k-g~f~llD~~~~~k~tw~--~~~~~-p~~gyDfwy 195 (476)
T KOG0918|consen 123 LEKTIDP-DILEKTGLACPHTSHCLASGNVMVSCLGDAEG--NAK-GGFLLLDSDFNEKGTWE--KPGHS-PLFGYDFWY 195 (476)
T ss_pred eeeeech-hhHhhcCCcCCcccccccCCCeeEEeeccccc--CCc-CCeEEecCccceecccc--cCCCc-cccccceee
Confidence 9987776 89999999999977666655332111101110 111 1333332110 11121 11111 2223222
Q ss_pred HHHHHHhcCCcEEEEeccccccceEEecCCeEEEEEccCCCCCCCCCeEEEEEEcCc--ceEEEEEecC
Q 003577 695 VSDFCKRNKLQLIIRAHECVMDGFERFAQGQLITLFSATNYCGTANNAGAILVVGRG--LVVVPKLIHP 761 (810)
Q Consensus 695 ~~~fl~~~~l~~iiR~H~~~~~G~~~~~~~~~itvfSa~~y~~~~~n~ga~l~~~~~--~~~~~~~~~~ 761 (810)
.-.+......+.+.+.|.-...++..+.++ ++.++..-|.-...|.++.+.++.+ +.++.+.+|.
T Consensus 196 qpr~~~mIstewgap~~~~~gf~~~~v~d~--lyg~~lhvy~w~~~~~~QtidL~~~gllpleiRfLh~ 262 (476)
T KOG0918|consen 196 QPRHNVMISTEWGAPNALRKGFNPADVEDG--LYGSHLHVYQWSPGELKQTIDLGDTGLLPLEIRFLHN 262 (476)
T ss_pred ccccceEEeecccCchhhhcCCChhHhhcc--ceeeeeEEEecCCccceeEEecCCCCcceEEeeeccC
Confidence 223445556667778886544444455666 8889999998888899999999775 2334455554
No 123
>cd00839 MPP_PAPs purple acid phosphatases of the metallophosphatase superfamily, metallophosphatase domain. Purple acid phosphatases (PAPs) belong to a diverse family of binuclear metallohydrolases that have been identified and characterized in plants, animals, and fungi. PAPs contain a binuclear metal center and their characteristic pink or purple color derives from a charge-transfer transition between a tyrosine residue and a chromophoric ferric ion within the binuclear center. PAPs catalyze the hydrolysis of a wide range of activated phosphoric acid mono- and di-esters and anhydrides. PAPs are distinguished from the other phosphatases by their insensitivity to L-(+) tartrate inhibition and are therefore also known as tartrate resistant acid phosphatases (TRAPs). While only a few copies of PAP-like genes are present in mammalian and fungal genomes, multiple copies are present in plant genomes. PAPs belong to the metallophosphatase (MPP) superfamily. MPPs are functionally diver
Probab=95.85 E-value=0.052 Score=58.59 Aligned_cols=37 Identities=11% Similarity=0.200 Sum_probs=25.7
Q ss_pred CHHHHHHHHHhcCCcEEEEeccccccceEEecCCeEE
Q 003577 691 GPDRVSDFCKRNKLQLIIRAHECVMDGFERFAQGQLI 727 (810)
Q Consensus 691 g~~~~~~fl~~~~l~~iiR~H~~~~~G~~~~~~~~~i 727 (810)
....+.+.+++.++++++-||.-...-+....+++++
T Consensus 181 ~~~~l~~ll~~~~v~~vl~GH~H~y~r~~p~~~~~~~ 217 (294)
T cd00839 181 MRAALEDLFYKYGVDLVLSGHVHAYERTCPVYNGTVV 217 (294)
T ss_pred HHHHHHHHHHHhCCCEEEEccceeeEeechhhCCEec
Confidence 3456778899999999999998664433333455543
No 124
>cd07393 MPP_DR1119 Deinococcus radiodurans DR1119 and related proteins, metallophosphatase domain. DR1119 is an uncharacterized Deinococcus radiodurans protein with a metallophosphatase domain. The domain present in members of this family belongs to the metallophosphatase (MPP) superfamily. MPPs are functionally diverse, but all share a conserved domain with an active site consisting of two metal ions (usually manganese, iron, or zinc) coordinated with octahedral geometry by a cage of histidine, aspartate, and asparagine residues. The MPP superfamily includes: Mre11/SbcD-like exonucleases, Dbr1-like RNA lariat debranching enzymes, YfcE-like phosphodiesterases, purple acid phosphatases (PAPs), YbbF-like UDP-2,3-diacylglucosamine hydrolases, and acid sphingomyelinases (ASMases). The conserved domain is a double beta-sheet sandwich with a di-metal active site made up of residues located at the C-terminal side of the sheets. This domain is thought to allow for productive metal coordinat
Probab=95.81 E-value=0.023 Score=59.22 Aligned_cols=46 Identities=9% Similarity=-0.042 Sum_probs=29.7
Q ss_pred eCHHHHHHHHHhcCCcEEEEeccccccceE---EecCCeEEEEEccCCCCC
Q 003577 690 FGPDRVSDFCKRNKLQLIIRAHECVMDGFE---RFAQGQLITLFSATNYCG 737 (810)
Q Consensus 690 fg~~~~~~fl~~~~l~~iiR~H~~~~~G~~---~~~~~~~itvfSa~~y~~ 737 (810)
++...+.+.+++.++++++-||.-...-.. ...+| |+.+++|.=|-
T Consensus 180 ~~~~~~~~~~~~~~v~~vl~GH~H~~~~~~~~~~~~~g--i~~~~~~~~~~ 228 (232)
T cd07393 180 GDDSPISKLIEEYGVDICVYGHLHGVGRDRAINGERGG--IRYQLVSADYL 228 (232)
T ss_pred CCHHHHHHHHHHcCCCEEEECCCCCCcccccccceECC--EEEEEEcchhc
Confidence 355677888899999999999975432222 12333 56677665553
No 125
>cd07383 MPP_Dcr2 Saccharomyces cerevisiae DCR2 phosphatase and related proteins, metallophosphatase domain. DCR2 phosphatase (Dosage-dependent Cell Cycle Regulator 2) functions together with DCR1 (Gid8) in a common pathway to accelerate initiation of DNA replication in Saccharomyces cerevisiae. Genetic analysis suggests that DCR1 functions upstream of DCR2. DCR2 interacts with and dephosphorylates Sic1, an inhibitor of mitotic cyclin/cyclin-dependent kinase complexes, which may serve to trigger the initiation of cell division. DCR2 belongs to the metallophosphatase (MPP) superfamily. MPPs are functionally diverse, but all share a conserved domain with an active site consisting of two metal ions (usually manganese, iron, or zinc) coordinated with octahedral geometry by a cage of histidine, aspartate, and asparagine residues. The MPP superfamily includes: Mre11/SbcD-like exonucleases, Dbr1-like RNA lariat debranching enzymes, YfcE-like phosphodiesterases, purple acid phosphatases (PAP
Probab=95.78 E-value=0.03 Score=56.85 Aligned_cols=41 Identities=17% Similarity=0.182 Sum_probs=29.8
Q ss_pred eEEEeccccCCCCC---hHHHHHHHHHHhhcCCCcEEEecCCcc
Q 003577 541 DYLFLGDYVDRGQH---SLETITLLLALKIEYPENVHLIRGNHE 581 (810)
Q Consensus 541 ~~vfLGDyVDRG~~---s~evl~ll~~lk~~~p~~v~llrGNHE 581 (810)
.+|++||+++.+.. +.+.+..++.......-.++++.||||
T Consensus 44 ~vv~~GDl~~~~~~~~~~~~~~~~~~~~l~~~~~p~~~~~GNHD 87 (199)
T cd07383 44 LVVLTGDLITGENTNDNSTSALDKAVSPMIDRKIPWAATFGNHD 87 (199)
T ss_pred EEEECCccccCCCCchHHHHHHHHHHHHHHHcCCCEEEECccCC
Confidence 68999999997765 355665555443334456899999999
No 126
>PRK11138 outer membrane biogenesis protein BamB; Provisional
Probab=95.58 E-value=4.1 Score=45.98 Aligned_cols=219 Identities=17% Similarity=0.189 Sum_probs=113.7
Q ss_pred eEEEecC--CCcEEEecCCCC-----CCccccccEEEEECCEEEEECccCCCCCccCcEEEEEccCCceEEEEEeecCCC
Q 003577 2 MFSLENG--PAGVCRIRPAGE-----PPSPRAAHAAAAVGTMVVFQGGIGPAGHSTDDLYVLDLTNDKFKWHRVVVQGQG 74 (810)
Q Consensus 2 l~~~~~~--t~~W~~l~~~g~-----~P~~R~~haa~~~~~~lyv~GG~~~~~~~~~dl~~lDl~t~~~~W~~v~~~g~~ 74 (810)
|+.+|.. ...|+.-..... .+.++..-+.+..++.||+.+. ...++.+|..+.+..|+.-..
T Consensus 81 l~ald~~tG~~~W~~~~~~~~~~~~~~~~~~~~~~~~v~~~~v~v~~~-------~g~l~ald~~tG~~~W~~~~~---- 149 (394)
T PRK11138 81 VKALDADTGKEIWSVDLSEKDGWFSKNKSALLSGGVTVAGGKVYIGSE-------KGQVYALNAEDGEVAWQTKVA---- 149 (394)
T ss_pred EEEEECCCCcEeeEEcCCCcccccccccccccccccEEECCEEEEEcC-------CCEEEEEECCCCCCcccccCC----
Confidence 6778764 455976322210 0012333334566788887543 246999999998888976321
Q ss_pred CCcccccEEEEECCcEEEEEccCCCCCCCCcEEEEecCCCCcEEEEecCCCCCCCcccceEEEEeCCcEEEEEcccCCCC
Q 003577 75 PGPRYGHVMDLVSQRYLVSVSGNDGKRVLSDAWALDTAQKPYVWQRLNPEGDRPSARMYATASARSDGMFLLCGGRDASG 154 (810)
Q Consensus 75 P~~R~~Hs~~~v~~~~l~VfGG~~g~~~~ndv~~yd~~~~~~~W~~i~~~g~~P~~R~~hsa~~~~~~~l~v~GG~~~~g 154 (810)
.+- ..+.++.+ ..+|+..+. +.++.||.++....|+.-..... ...+...+- ++.++.+|+..+ +
T Consensus 150 -~~~-~ssP~v~~-~~v~v~~~~------g~l~ald~~tG~~~W~~~~~~~~-~~~~~~~sP-~v~~~~v~~~~~-~--- 214 (394)
T PRK11138 150 -GEA-LSRPVVSD-GLVLVHTSN------GMLQALNESDGAVKWTVNLDVPS-LTLRGESAP-ATAFGGAIVGGD-N--- 214 (394)
T ss_pred -Cce-ecCCEEEC-CEEEEECCC------CEEEEEEccCCCEeeeecCCCCc-ccccCCCCC-EEECCEEEEEcC-C---
Confidence 111 12223334 446654322 35899999999888987432110 011211222 233454555332 1
Q ss_pred CccccEEEEEeCCCCeEEEEeCCCCCC----Ccc---cceEEEEECCEEEEEcccCCCCCCCCCCceEEEEECCCCc--E
Q 003577 155 APLADAYGLLMHRNGQWEWTLAPGVAP----SPR---YQHAAVFVGARLHVTGGALRGGRAIEGEAAVAVLDTAAGV--W 225 (810)
Q Consensus 155 ~~l~d~~~l~~~~~~~W~~~~~~g~~P----~~R---~~hsav~~~~~l~V~GG~~~~~~~~~~~~~l~~yD~~t~~--W 225 (810)
..++.++. .+++-.|......+. ..| ...+.+..++.+|+.+.. ..++++|..+.+ |
T Consensus 215 ---g~v~a~d~-~~G~~~W~~~~~~~~~~~~~~~~~~~~~sP~v~~~~vy~~~~~----------g~l~ald~~tG~~~W 280 (394)
T PRK11138 215 ---GRVSAVLM-EQGQLIWQQRISQPTGATEIDRLVDVDTTPVVVGGVVYALAYN----------GNLVALDLRSGQIVW 280 (394)
T ss_pred ---CEEEEEEc-cCChhhheeccccCCCccchhcccccCCCcEEECCEEEEEEcC----------CeEEEEECCCCCEEE
Confidence 13444544 345433332211111 001 112345668888876421 138999998764 8
Q ss_pred EEcccCccCCCCCCCCCCCCCCCCCCcceeeEEEEeCCEEEEEcCCCCCCCCCcEEEEeCCCCc
Q 003577 226 LDRNGLVTSSRTSKGHGEHDPSLELMRRCRHASASIGVRIYIYGGLKGDILLDDFLVAENSPFQ 289 (810)
Q Consensus 226 ~~v~~~~~~~~~~~~~~~~~~~~~p~~R~~hs~~~~~~~i~I~GG~~~~~~~~Dl~~ld~~~~~ 289 (810)
+.--.. . ...+..+++||+... + ..++++|..+-+
T Consensus 281 ~~~~~~--------------------~---~~~~~~~~~vy~~~~-~-----g~l~ald~~tG~ 315 (394)
T PRK11138 281 KREYGS--------------------V---NDFAVDGGRIYLVDQ-N-----DRVYALDTRGGV 315 (394)
T ss_pred eecCCC--------------------c---cCcEEECCEEEEEcC-C-----CeEEEEECCCCc
Confidence 752111 1 124566888888653 2 347888887643
No 127
>cd08163 MPP_Cdc1 Saccharomyces cerevisiae CDC1 and related proteins, metallophosphatase domain. Cdc1 (also known as XlCdc1 in Xenopus laevis) is an endoplasmic reticulum-localized transmembrane lipid phosphatase with a metallophosphatase domain facing the ER lumen. In budding yeast, the gene encoding CDC1 is essential while nonlethal mutations cause defects in Golgi inheritance and actin polarization. Cdc1 mutant cells accumulate an unidentified phospholipid, suggesting that Cdc1 is a lipid phosphatase. Cdc1 mutant cells also have highly elevated intracellular calcium levels suggesting a possible role for Cdc1 in calcium regulation. The 5' flanking region of Cdc1 is a regulatory region with conserved binding site motifs for AP1, AP2, Sp1, NF-1 and CREB. DNA polymerase delta consists of at least four subunits - Pol3, Cdc1, Cdc27, and Cdm1. Cdc1 belongs to the metallophosphatase (MPP) superfamily. MPPs are functionally diverse, but all share a conserved domain with an active site
Probab=95.38 E-value=0.24 Score=52.52 Aligned_cols=24 Identities=8% Similarity=0.087 Sum_probs=21.5
Q ss_pred eCHHHHHHHHHhcCCcEEEEeccc
Q 003577 690 FGPDRVSDFCKRNKLQLIIRAHEC 713 (810)
Q Consensus 690 fg~~~~~~fl~~~~l~~iiR~H~~ 713 (810)
-.++..++.|++.+-.+|.-||+-
T Consensus 203 l~~~~s~~il~~~~P~~vfsGhdH 226 (257)
T cd08163 203 LEPSLSEVILKAVQPVIAFSGDDH 226 (257)
T ss_pred cCHHHHHHHHHhhCCcEEEecCCC
Confidence 488999999999999999999964
No 128
>TIGR01640 F_box_assoc_1 F-box protein interaction domain. This model describes a large family of plant domains, with several hundred members in Arabidopsis thaliana. Most examples are found C-terminal to an F-box (pfam00646), a 60 amino acid motif involved in ubiquitination of target proteins to mark them for degradation. Two-hybid experiments support the idea that most members are interchangeable F-box subunits of SCF E3 complexes. Some members have two copies of this domain.
Probab=95.24 E-value=3.2 Score=42.97 Aligned_cols=164 Identities=11% Similarity=0.077 Sum_probs=83.2
Q ss_pred CcEEEEEccCCceEEEEEeecCCCCCcc---ccc-EEEEE----CCcEEEEEccCCCCCCCCcEEEEecCCCCcEEEEec
Q 003577 51 DDLYVLDLTNDKFKWHRVVVQGQGPGPR---YGH-VMDLV----SQRYLVSVSGNDGKRVLSDAWALDTAQKPYVWQRLN 122 (810)
Q Consensus 51 ~dl~~lDl~t~~~~W~~v~~~g~~P~~R---~~H-s~~~v----~~~~l~VfGG~~g~~~~ndv~~yd~~~~~~~W~~i~ 122 (810)
..++++|+.| .+|..++.. +.++ ..+ ....+ ++-.++.+...........+.+|+..++ +|+.+.
T Consensus 14 ~~~~V~NP~T--~~~~~LP~~---~~~~~~~~~~~~~~G~d~~~~~YKVv~~~~~~~~~~~~~~~Vys~~~~--~Wr~~~ 86 (230)
T TIGR01640 14 KRLVVWNPST--GQSRWLPTP---KSRRSNKESDTYFLGYDPIEKQYKVLCFSDRSGNRNQSEHQVYTLGSN--SWRTIE 86 (230)
T ss_pred CcEEEECCCC--CCEEecCCC---CCcccccccceEEEeecccCCcEEEEEEEeecCCCCCccEEEEEeCCC--Cccccc
Confidence 5789999999 458888742 2211 111 11111 1223333333211122346889999988 999986
Q ss_pred CCCCCCCcccceEEEEeCCcEEEEEcccCCCCCccccEEEEEeCCCCeEE-EEeCCCCCCCcccceEEEEECCEEEEEcc
Q 003577 123 PEGDRPSARMYATASARSDGMFLLCGGRDASGAPLADAYGLLMHRNGQWE-WTLAPGVAPSPRYQHAAVFVGARLHVTGG 201 (810)
Q Consensus 123 ~~g~~P~~R~~hsa~~~~~~~l~v~GG~~~~g~~l~d~~~l~~~~~~~W~-~~~~~g~~P~~R~~hsav~~~~~l~V~GG 201 (810)
... +........ +..+|.+|-+.-.... ....-+..+|..+ .+|. .+..|............+.++++|-++..
T Consensus 87 ~~~--~~~~~~~~~-v~~~G~lyw~~~~~~~-~~~~~IvsFDl~~-E~f~~~i~~P~~~~~~~~~~~L~~~~G~L~~v~~ 161 (230)
T TIGR01640 87 CSP--PHHPLKSRG-VCINGVLYYLAYTLKT-NPDYFIVSFDVSS-ERFKEFIPLPCGNSDSVDYLSLINYKGKLAVLKQ 161 (230)
T ss_pred cCC--CCccccCCe-EEECCEEEEEEEECCC-CCcEEEEEEEccc-ceEeeeeecCccccccccceEEEEECCEEEEEEe
Confidence 321 111111223 3445555555433221 1112466777664 4788 35544221111112344556788777654
Q ss_pred cCCCCCCCCCCceEEEEE-CCCCcEEEcccC
Q 003577 202 ALRGGRAIEGEAAVAVLD-TAAGVWLDRNGL 231 (810)
Q Consensus 202 ~~~~~~~~~~~~~l~~yD-~~t~~W~~v~~~ 231 (810)
..... .-++|+.+ ....+|+++-..
T Consensus 162 ~~~~~-----~~~IWvl~d~~~~~W~k~~~i 187 (230)
T TIGR01640 162 KKDTN-----NFDLWVLNDAGKQEWSKLFTV 187 (230)
T ss_pred cCCCC-----cEEEEEECCCCCCceeEEEEE
Confidence 32211 24588886 546679986555
No 129
>TIGR00583 mre11 DNA repair protein (mre11). All proteins in this family for which functions are known are subunits of a nuclease complex made up of multiple proteins including MRE11 and RAD50 homologs. The functions of this nuclease complex include recombinational repair and non-homolgous end joining. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University). The proteins in this family are distantly related to proteins in the SbcCD complex of bacteria.
Probab=95.17 E-value=0.056 Score=60.85 Aligned_cols=72 Identities=18% Similarity=0.150 Sum_probs=51.6
Q ss_pred CeEEEecCCCC------------HHHHHHHHHHhCCCCCCCCcceeeEEEeccccCCCCChHHHHHHHHHHhhc------
Q 003577 507 PVKVFGDLHGQ------------FGDLMRLFDEYGFPSTAGDITYIDYLFLGDYVDRGQHSLETITLLLALKIE------ 568 (810)
Q Consensus 507 pi~vvGDiHG~------------~~~L~~~l~~~~~~~~~~~~~~~~~vfLGDyVDRG~~s~evl~ll~~lk~~------ 568 (810)
+|.+++|+|-- +..|.++++.+.-...+ -+|+.||+.|+..-|.+++..++.+-.+
T Consensus 5 KIlh~SD~HlG~~~~~~~r~~D~~~~f~eil~~a~~~~vD------~VLiaGDLFd~~~Ps~~~~~~~~~~lr~~~~g~~ 78 (405)
T TIGR00583 5 RILVSTDNHVGYGENDPVRGDDSWNTFEEVLQIAKEQDVD------MILLGGDLFHENKPSRKSLYQVLRSLRLYCLGDK 78 (405)
T ss_pred EEEEEcCCCCCCccCCchhhhhHHHHHHHHHHHHHHcCCC------EEEECCccCCCCCCCHHHHHHHHHHHHHhhccCC
Confidence 48899999942 45667777766433222 5888999999999999888665443322
Q ss_pred ------------------------------CCCcEEEecCCccccc
Q 003577 569 ------------------------------YPENVHLIRGNHEAAD 584 (810)
Q Consensus 569 ------------------------------~p~~v~llrGNHE~~~ 584 (810)
..--||+|-||||...
T Consensus 79 p~~~~~Lsd~~~~~~~~~~~~~ny~d~~~~~~iPVf~I~GNHD~p~ 124 (405)
T TIGR00583 79 PCELEFLSDASVVFNQSAFGNVNYEDPNINVAIPVFSIHGNHDDPS 124 (405)
T ss_pred ccchhhccchhhhcccccccccccccccccCCCCEEEEcCCCCCcc
Confidence 1236999999999865
No 130
>PRK11138 outer membrane biogenesis protein BamB; Provisional
Probab=95.09 E-value=4.5 Score=45.61 Aligned_cols=206 Identities=17% Similarity=0.185 Sum_probs=105.7
Q ss_pred EEEEECCEEEEECccCCCCCccCcEEEEEccCCceEEEEEeecCC--C---CCcccccEEEEECCcEEEEEccCCCCCCC
Q 003577 29 AAAAVGTMVVFQGGIGPAGHSTDDLYVLDLTNDKFKWHRVVVQGQ--G---PGPRYGHVMDLVSQRYLVSVSGNDGKRVL 103 (810)
Q Consensus 29 aa~~~~~~lyv~GG~~~~~~~~~dl~~lDl~t~~~~W~~v~~~g~--~---P~~R~~Hs~~~v~~~~l~VfGG~~g~~~~ 103 (810)
+.+..+++||+.+.. ..+++||..+.+..|+.-..... . ++.+..-+. ++.++.+|+ |+.+
T Consensus 64 sPvv~~~~vy~~~~~-------g~l~ald~~tG~~~W~~~~~~~~~~~~~~~~~~~~~~~-~v~~~~v~v-~~~~----- 129 (394)
T PRK11138 64 HPAVAYNKVYAADRA-------GLVKALDADTGKEIWSVDLSEKDGWFSKNKSALLSGGV-TVAGGKVYI-GSEK----- 129 (394)
T ss_pred ccEEECCEEEEECCC-------CeEEEEECCCCcEeeEEcCCCccccccccccccccccc-EEECCEEEE-EcCC-----
Confidence 345668899997653 36899999988888986332100 0 011222233 334445775 4332
Q ss_pred CcEEEEecCCCCcEEEEecCCCCCCCcccceEEEEeCCcEEEEEcccCCCCCccccEEEEEeCCCCeEEEEeCCCCC-CC
Q 003577 104 SDAWALDTAQKPYVWQRLNPEGDRPSARMYATASARSDGMFLLCGGRDASGAPLADAYGLLMHRNGQWEWTLAPGVA-PS 182 (810)
Q Consensus 104 ndv~~yd~~~~~~~W~~i~~~g~~P~~R~~hsa~~~~~~~l~v~GG~~~~g~~l~d~~~l~~~~~~~W~~~~~~g~~-P~ 182 (810)
..+++||.++....|+.-.. +. ..+..++.++.+|+..+. ..++.++.. +++-.|......+ ..
T Consensus 130 g~l~ald~~tG~~~W~~~~~-~~------~~ssP~v~~~~v~v~~~~-------g~l~ald~~-tG~~~W~~~~~~~~~~ 194 (394)
T PRK11138 130 GQVYALNAEDGEVAWQTKVA-GE------ALSRPVVSDGLVLVHTSN-------GMLQALNES-DGAVKWTVNLDVPSLT 194 (394)
T ss_pred CEEEEEECCCCCCcccccCC-Cc------eecCCEEECCEEEEECCC-------CEEEEEEcc-CCCEeeeecCCCCccc
Confidence 35899999888788976422 11 112223446666664321 235666654 5554554433211 11
Q ss_pred cccceEEEEECCEEEEEcccCCCCCCCCCCceEEEEECCCCc--EEEcccCccCCCCCCCCCCCCCCCCCCcceeeEEEE
Q 003577 183 PRYQHAAVFVGARLHVTGGALRGGRAIEGEAAVAVLDTAAGV--WLDRNGLVTSSRTSKGHGEHDPSLELMRRCRHASAS 260 (810)
Q Consensus 183 ~R~~hsav~~~~~l~V~GG~~~~~~~~~~~~~l~~yD~~t~~--W~~v~~~~~~~~~~~~~~~~~~~~~p~~R~~hs~~~ 260 (810)
.+...+-+..++.+|+..+. ..++.+|.++.+ |+..-...... .. .....+...+.+.
T Consensus 195 ~~~~~sP~v~~~~v~~~~~~----------g~v~a~d~~~G~~~W~~~~~~~~~~-~~---------~~~~~~~~~sP~v 254 (394)
T PRK11138 195 LRGESAPATAFGGAIVGGDN----------GRVSAVLMEQGQLIWQQRISQPTGA-TE---------IDRLVDVDTTPVV 254 (394)
T ss_pred ccCCCCCEEECCEEEEEcCC----------CEEEEEEccCChhhheeccccCCCc-cc---------hhcccccCCCcEE
Confidence 12223334556666663321 237888888764 76422110000 00 0000011123455
Q ss_pred eCCEEEEEcCCCCCCCCCcEEEEeCCCCc
Q 003577 261 IGVRIYIYGGLKGDILLDDFLVAENSPFQ 289 (810)
Q Consensus 261 ~~~~i~I~GG~~~~~~~~Dl~~ld~~~~~ 289 (810)
.++.+|+.+. + ..++++|..+-+
T Consensus 255 ~~~~vy~~~~-~-----g~l~ald~~tG~ 277 (394)
T PRK11138 255 VGGVVYALAY-N-----GNLVALDLRSGQ 277 (394)
T ss_pred ECCEEEEEEc-C-----CeEEEEECCCCC
Confidence 6888887553 3 357888887643
No 131
>cd07401 MPP_TMEM62_N Homo sapiens TMEM62, N-terminal metallophosphatase domain. TMEM62 (transmembrane protein 62) is an uncharacterized Homo sapiens transmembrane protein with an N-terminal metallophosphatase domain. TMEM62 belongs to the metallophosphatase (MPP) superfamily. MPPs are functionally diverse, but all share a conserved domain with an active site consisting of two metal ions (usually manganese, iron, or zinc) coordinated with octahedral geometry by a cage of histidine, aspartate, and asparagine residues. The MPP superfamily includes: Mre11/SbcD-like exonucleases, Dbr1-like RNA lariat debranching enzymes, YfcE-like phosphodiesterases, purple acid phosphatases (PAPs), YbbF-like UDP-2,3-diacylglucosamine hydrolases, and acid sphingomyelinases (ASMases). The conserved domain is a double beta-sheet sandwich with a di-metal active site made up of residues located at the C-terminal side of the sheets. This domain is thought to allow for productive metal coordination.
Probab=95.00 E-value=0.054 Score=57.40 Aligned_cols=26 Identities=19% Similarity=0.335 Sum_probs=21.2
Q ss_pred HHHHHHhcCCcEEEEeccccccceEE
Q 003577 695 VSDFCKRNKLQLIIRAHECVMDGFER 720 (810)
Q Consensus 695 ~~~fl~~~~l~~iiR~H~~~~~G~~~ 720 (810)
+.+.+++.++++++-||.-...+.+.
T Consensus 190 ~~~ll~~~~v~~vl~GH~H~~~~~~p 215 (256)
T cd07401 190 FKDLLKKYNVTAYLCGHLHPLGGLEP 215 (256)
T ss_pred HHHHHHhcCCcEEEeCCccCCCccee
Confidence 77888999999999999877666443
No 132
>COG2908 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=94.75 E-value=0.14 Score=52.48 Aligned_cols=196 Identities=22% Similarity=0.265 Sum_probs=100.7
Q ss_pred EEecCCCC------HHHHHHHHHHhCCCCCCCCcceeeEEEeccccC--CCCC-----hHHHHHHHHHHhhcCCCcEEEe
Q 003577 510 VFGDLHGQ------FGDLMRLFDEYGFPSTAGDITYIDYLFLGDYVD--RGQH-----SLETITLLLALKIEYPENVHLI 576 (810)
Q Consensus 510 vvGDiHG~------~~~L~~~l~~~~~~~~~~~~~~~~~vfLGDyVD--RG~~-----s~evl~ll~~lk~~~p~~v~ll 576 (810)
+|+|+|=. -+.|+++++.... .++ .+.+|||++| .|.. --+|...|..+. +-..+++.+
T Consensus 2 FISDlHL~~~~p~~t~~fl~Fl~~~a~-~ad------~lyilGDifd~w~g~~~~~~~~~~V~~~l~~~a-~~G~~v~~i 73 (237)
T COG2908 2 FISDLHLGPKRPALTAFFLDFLREEAA-QAD------ALYILGDIFDGWIGDDEPPQLHRQVAQKLLRLA-RKGTRVYYI 73 (237)
T ss_pred eeeccccCCCCcHHHHHHHHHHHhccc-cCc------EEEEechhhhhhhcCCcccHHHHHHHHHHHHHH-hcCCeEEEe
Confidence 68888844 3445666665432 222 6888999998 3332 223444444432 345689999
Q ss_pred cCCccccchhhccCChHHHHHhhCCCCccccccccccccccCceeE---EEcCcEEEecCCcCCccc------------c
Q 003577 577 RGNHEAADINALFGFRLECIERMGENDGIWAWTRFNQLFNCLPLAA---LIEKKIICMHGGIGRSIH------------S 641 (810)
Q Consensus 577 rGNHE~~~~~~~~gf~~e~~~~~~~~~~~~~~~~~~~~f~~lPla~---~i~~~il~vHgGi~~~~~------------~ 641 (810)
.||||. .+...+ ....|. +.-+|-.. .-+.+++++||-.-.... -
T Consensus 74 ~GN~Df-ll~~~f------~~~~g~-------------~~l~~~~~~~~l~g~~~Ll~HGD~f~t~~~~y~~~r~~~~~~ 133 (237)
T COG2908 74 HGNHDF-LLGKRF------AQEAGG-------------MTLLPDPIVLDLYGKRILLAHGDTFCTDDRAYQWFRYKVHWA 133 (237)
T ss_pred cCchHH-HHHHHH------HhhcCc-------------eEEcCcceeeeecCcEEEEEeCCcccchHHHHHHHHHHcccH
Confidence 999994 332222 111211 11223332 335799999997643210 0
Q ss_pred hhhhhcccCCcccCCCchhhhhhccCCCCCCCCCCCCCcCCCCCc--eeeeCHHHHHHHHHhcCCcEEEEeccccccceE
Q 003577 642 VEQIEKLERPITMDAGSIILMDLLWSDPTENDSIEGLRPNARGPG--LVTFGPDRVSDFCKRNKLQLIIRAHECVMDGFE 719 (810)
Q Consensus 642 ~~~i~~~~rp~~~~~~~~~~~dllWsdP~~~~~~~~~~~~~rg~~--~~~fg~~~~~~fl~~~~l~~iiR~H~~~~~G~~ 719 (810)
..+..-+.+|+..- - .+-.=+|+.- .|.+...... ..-..+.++.+-+++++++.+|.||.-.+..-.
T Consensus 134 ~~~~lflnl~l~~R--~-ri~~k~r~~s-------~~~k~~~~~~~~i~d~~~~~v~~~~~~~~vd~vI~GH~Hr~ai~~ 203 (237)
T COG2908 134 WLQLLFLNLPLRVR--R-RIAYKIRSLS-------SWAKKKVKKAVNIMDVNPAAVADEARRHGVDGVIHGHTHRPAIHN 203 (237)
T ss_pred HHHHHHHHhHHHHH--H-HHHHHHHHhh-------HHhHHhhhhHHHHHHhhHHHHHHHHHHcCCCEEEecCcccHhhcc
Confidence 11111112222200 0 1111245443 1111111101 122467788889999999999999987654433
Q ss_pred EecCCeEEEEEccCCCC--CCCCCeEEEEEEcCcce
Q 003577 720 RFAQGQLITLFSATNYC--GTANNAGAILVVGRGLV 753 (810)
Q Consensus 720 ~~~~~~~itvfSa~~y~--~~~~n~ga~l~~~~~~~ 753 (810)
.. + ..|| |.--..++++.++.+..
T Consensus 204 i~--~--------~~yi~lGdW~~~~s~~~v~~~~~ 229 (237)
T COG2908 204 IP--G--------ITYINLGDWVSEGSILEVDDGGL 229 (237)
T ss_pred CC--C--------ceEEecCcchhcceEEEEecCcE
Confidence 21 1 2232 22235678888877653
No 133
>COG2129 Predicted phosphoesterases, related to the Icc protein [General function prediction only]
Probab=94.54 E-value=4.2 Score=41.57 Aligned_cols=205 Identities=18% Similarity=0.214 Sum_probs=113.5
Q ss_pred CCeEEEecCCCCHHHHHHHHHHhCCCCCCCCcceeeEEEecccc--CCCCChHHHHHH-HHHHhhcCCCcEEEecCCccc
Q 003577 506 APVKVFGDLHGQFGDLMRLFDEYGFPSTAGDITYIDYLFLGDYV--DRGQHSLETITL-LLALKIEYPENVHLIRGNHEA 582 (810)
Q Consensus 506 ~pi~vvGDiHG~~~~L~~~l~~~~~~~~~~~~~~~~~vfLGDyV--DRG~~s~evl~l-l~~lk~~~p~~v~llrGNHE~ 582 (810)
-++..+.||||.++.|.++++.......+ -+++.||+. ++|+.-.-.... +..++ .+-..++.+.||-|.
T Consensus 4 mkil~vtDlHg~~~~~~k~~~~~~~~~~D------~lviaGDlt~~~~~~~~~~~~~~~~e~l~-~~~~~v~avpGNcD~ 76 (226)
T COG2129 4 MKILAVTDLHGSEDSLKKLLNAAADIRAD------LLVIAGDLTYFHFGPKEVAEELNKLEALK-ELGIPVLAVPGNCDP 76 (226)
T ss_pred ceEEEEeccccchHHHHHHHHHHhhccCC------EEEEecceehhhcCchHHHHhhhHHHHHH-hcCCeEEEEcCCCCh
Confidence 35889999999999999999887644322 577799999 877643222211 33333 233579999999887
Q ss_pred cchhhccCChHHHHHhhCCCCccccccccccccccCceeEEEcCcEEEecCCcCCccc------chhhhhcccCCcccCC
Q 003577 583 ADINALFGFRLECIERMGENDGIWAWTRFNQLFNCLPLAALIEKKIICMHGGIGRSIH------SVEQIEKLERPITMDA 656 (810)
Q Consensus 583 ~~~~~~~gf~~e~~~~~~~~~~~~~~~~~~~~f~~lPla~~i~~~il~vHgGi~~~~~------~~~~i~~~~rp~~~~~ 656 (810)
..+-.. ....+ ..+.. -...+++-.||-=||..|.-. +-++|....+-.....
T Consensus 77 ~~v~~~-------l~~~~----~~v~~----------~v~~i~~~~~~G~Ggsn~tp~nt~~e~~E~~I~s~l~~~v~~~ 135 (226)
T COG2129 77 PEVIDV-------LKNAG----VNVHG----------RVVEIGGYGFVGFGGSNPTPFNTPREFSEDEIYSKLKSLVKKA 135 (226)
T ss_pred HHHHHH-------HHhcc----ccccc----------ceEEecCcEEEEecccCCCCCCCccccCHHHHHHHHHHHHhcc
Confidence 554321 11121 11211 122444555666678776521 2334443222111000
Q ss_pred CchhhhhhccCCCCCCCCCCCCCcCCCCCceeeeCHHHHHHHHHhcCCcEEEEeccccccceEEecCCeEEEEEccCCCC
Q 003577 657 GSIILMDLLWSDPTENDSIEGLRPNARGPGLVTFGPDRVSDFCKRNKLQLIIRAHECVMDGFERFAQGQLITLFSATNYC 736 (810)
Q Consensus 657 ~~~~~~dllWsdP~~~~~~~~~~~~~rg~~~~~fg~~~~~~fl~~~~l~~iiR~H~~~~~G~~~~~~~~~itvfSa~~y~ 736 (810)
......=++-.-|.. .... ++-| ...-|..++.+++++.+-.+.|.||=--..|++.- | =||+-.|.--
T Consensus 136 ~~~~~Il~~HaPP~g-t~~d----~~~g--~~hvGS~~vr~~ieefqP~l~i~GHIHEs~G~d~i--G--~TivVNPG~~ 204 (226)
T COG2129 136 DNPVNILLTHAPPYG-TLLD----TPSG--YVHVGSKAVRKLIEEFQPLLGLHGHIHESRGIDKI--G--NTIVVNPGPL 204 (226)
T ss_pred cCcceEEEecCCCCC-cccc----CCCC--ccccchHHHHHHHHHhCCceEEEeeeccccccccc--C--CeEEECCCCc
Confidence 000000011223321 1111 2223 22358999999999999999999985555676642 1 2666666543
Q ss_pred CCCCCeEEEEEEcCc
Q 003577 737 GTANNAGAILVVGRG 751 (810)
Q Consensus 737 ~~~~n~ga~l~~~~~ 751 (810)
+ .-..|++.++++
T Consensus 205 ~--~g~yA~i~l~~~ 217 (226)
T COG2129 205 G--EGRYALIELEKE 217 (226)
T ss_pred c--CceEEEEEecCc
Confidence 2 235688888776
No 134
>TIGR03300 assembly_YfgL outer membrane assembly lipoprotein YfgL. Members of this protein family are YfgL, a lipoprotein component of a complex that acts protein insertion into the bacterial outer membrane. Other members of this complex are NlpB, YfiO, and YaeT. This protein contains multiple copies of a repeat that, in other contexts, are associated with binding of the coenzyme PQQ.
Probab=94.51 E-value=9.9 Score=42.40 Aligned_cols=217 Identities=17% Similarity=0.170 Sum_probs=106.2
Q ss_pred eEEEecC--CCcEEEecCCCCCCccccccEEEEECCEEEEECccCCCCCccCcEEEEEccCCceEEEEEeecCCCCCccc
Q 003577 2 MFSLENG--PAGVCRIRPAGEPPSPRAAHAAAAVGTMVVFQGGIGPAGHSTDDLYVLDLTNDKFKWHRVVVQGQGPGPRY 79 (810)
Q Consensus 2 l~~~~~~--t~~W~~l~~~g~~P~~R~~haa~~~~~~lyv~GG~~~~~~~~~dl~~lDl~t~~~~W~~v~~~g~~P~~R~ 79 (810)
||.+|.. ...|+.-.. +. ...+.+..++.+|+..+ ...++.+|.++.+..|+.-... .....+.
T Consensus 117 l~ald~~tG~~~W~~~~~-~~-----~~~~p~v~~~~v~v~~~-------~g~l~a~d~~tG~~~W~~~~~~-~~~~~~~ 182 (377)
T TIGR03300 117 VIALDAEDGKELWRAKLS-SE-----VLSPPLVANGLVVVRTN-------DGRLTALDAATGERLWTYSRVT-PALTLRG 182 (377)
T ss_pred EEEEECCCCcEeeeeccC-ce-----eecCCEEECCEEEEECC-------CCeEEEEEcCCCceeeEEccCC-CceeecC
Confidence 5667753 344765321 11 11222334666666432 2458999999877789753321 0111122
Q ss_pred ccEEEEECCcEEEEEccCCCCCCCCcEEEEecCCCCcEEEEecCC--CCCCCccc--ceEEEEeCCcEEEEEcccCCCCC
Q 003577 80 GHVMDLVSQRYLVSVSGNDGKRVLSDAWALDTAQKPYVWQRLNPE--GDRPSARM--YATASARSDGMFLLCGGRDASGA 155 (810)
Q Consensus 80 ~Hs~~~v~~~~l~VfGG~~g~~~~ndv~~yd~~~~~~~W~~i~~~--g~~P~~R~--~hsa~~~~~~~l~v~GG~~~~g~ 155 (810)
..+.++.+ +.+ ++|..++ .++.+|+.+....|+.-... +.....|. ..+...+.++.+|+.+ .+
T Consensus 183 ~~sp~~~~-~~v-~~~~~~g-----~v~ald~~tG~~~W~~~~~~~~g~~~~~~~~~~~~~p~~~~~~vy~~~-~~---- 250 (377)
T TIGR03300 183 SASPVIAD-GGV-LVGFAGG-----KLVALDLQTGQPLWEQRVALPKGRTELERLVDVDGDPVVDGGQVYAVS-YQ---- 250 (377)
T ss_pred CCCCEEEC-CEE-EEECCCC-----EEEEEEccCCCEeeeeccccCCCCCchhhhhccCCccEEECCEEEEEE-cC----
Confidence 23344444 334 4554433 58899998887789753211 10000011 0111223456566643 21
Q ss_pred ccccEEEEEeCCCCeEEEEeCCCCCCCcccceEEEEECCEEEEEcccCCCCCCCCCCceEEEEECCCC--cEEEcccCcc
Q 003577 156 PLADAYGLLMHRNGQWEWTLAPGVAPSPRYQHAAVFVGARLHVTGGALRGGRAIEGEAAVAVLDTAAG--VWLDRNGLVT 233 (810)
Q Consensus 156 ~l~d~~~l~~~~~~~W~~~~~~g~~P~~R~~hsav~~~~~l~V~GG~~~~~~~~~~~~~l~~yD~~t~--~W~~v~~~~~ 233 (810)
..++.++.. +++-.|....+. ..+.+..++++|+... ...++++|..+. .|+.-...
T Consensus 251 --g~l~a~d~~-tG~~~W~~~~~~------~~~p~~~~~~vyv~~~----------~G~l~~~d~~tG~~~W~~~~~~-- 309 (377)
T TIGR03300 251 --GRVAALDLR-SGRVLWKRDASS------YQGPAVDDNRLYVTDA----------DGVVVALDRRSGSELWKNDELK-- 309 (377)
T ss_pred --CEEEEEECC-CCcEEEeeccCC------ccCceEeCCEEEEECC----------CCeEEEEECCCCcEEEcccccc--
Confidence 235555553 444333332111 1234456888888642 123899998776 47652211
Q ss_pred CCCCCCCCCCCCCCCCCCcceeeEEEEeCCEEEEEcCCCCCCCCCcEEEEeCCCCc
Q 003577 234 SSRTSKGHGEHDPSLELMRRCRHASASIGVRIYIYGGLKGDILLDDFLVAENSPFQ 289 (810)
Q Consensus 234 ~~~~~~~~~~~~~~~~p~~R~~hs~~~~~~~i~I~GG~~~~~~~~Dl~~ld~~~~~ 289 (810)
.+...+.+..+++||+. ..++ .++++|..+.+
T Consensus 310 ------------------~~~~ssp~i~g~~l~~~-~~~G-----~l~~~d~~tG~ 341 (377)
T TIGR03300 310 ------------------YRQLTAPAVVGGYLVVG-DFEG-----YLHWLSREDGS 341 (377)
T ss_pred ------------------CCccccCEEECCEEEEE-eCCC-----EEEEEECCCCC
Confidence 12222334467777663 3333 46778776543
No 135
>PF13360 PQQ_2: PQQ-like domain; PDB: 3HXJ_B 1YIQ_A 1KV9_A 3Q54_A 2YH3_A 3PRW_A 3P1L_A 3Q7M_A 3Q7O_A 3Q7N_A ....
Probab=94.49 E-value=6.6 Score=40.28 Aligned_cols=214 Identities=17% Similarity=0.203 Sum_probs=111.9
Q ss_pred eEEEecCCC--cEEEecCCCCCCccccccE--EEEECCEEEEECccCCCCCccCcEEEEEccCCceEEEEEeecCCCCCc
Q 003577 2 MFSLENGPA--GVCRIRPAGEPPSPRAAHA--AAAVGTMVVFQGGIGPAGHSTDDLYVLDLTNDKFKWHRVVVQGQGPGP 77 (810)
Q Consensus 2 l~~~~~~t~--~W~~l~~~g~~P~~R~~ha--a~~~~~~lyv~GG~~~~~~~~~dl~~lDl~t~~~~W~~v~~~g~~P~~ 77 (810)
|..+|..+. -|+.-. +. +..+-. .+..++.+|+.. ....++++|..+.+..|+.-.. .+
T Consensus 5 l~~~d~~tG~~~W~~~~--~~---~~~~~~~~~~~~~~~v~~~~-------~~~~l~~~d~~tG~~~W~~~~~-----~~ 67 (238)
T PF13360_consen 5 LSALDPRTGKELWSYDL--GP---GIGGPVATAVPDGGRVYVAS-------GDGNLYALDAKTGKVLWRFDLP-----GP 67 (238)
T ss_dssp EEEEETTTTEEEEEEEC--SS---SCSSEEETEEEETTEEEEEE-------TTSEEEEEETTTSEEEEEEECS-----SC
T ss_pred EEEEECCCCCEEEEEEC--CC---CCCCccceEEEeCCEEEEEc-------CCCEEEEEECCCCCEEEEeecc-----cc
Confidence 567776544 486632 11 112222 333678998873 3477999999988888987442 11
Q ss_pred ccccEEEEECCcEEEEEccCCCCCCCCcEEEEecCCCCcEEEE-ecCCCCCCCcccceEEEEeCCcEEEEEcccCCCCCc
Q 003577 78 RYGHVMDLVSQRYLVSVSGNDGKRVLSDAWALDTAQKPYVWQR-LNPEGDRPSARMYATASARSDGMFLLCGGRDASGAP 156 (810)
Q Consensus 78 R~~Hs~~~v~~~~l~VfGG~~g~~~~ndv~~yd~~~~~~~W~~-i~~~g~~P~~R~~hsa~~~~~~~l~v~GG~~~~g~~ 156 (810)
........++ .+|+..+. +.++++|..+....|+. .......+ .+.. ....+.++.+++...
T Consensus 68 -~~~~~~~~~~-~v~v~~~~------~~l~~~d~~tG~~~W~~~~~~~~~~~-~~~~-~~~~~~~~~~~~~~~------- 130 (238)
T PF13360_consen 68 -ISGAPVVDGG-RVYVGTSD------GSLYALDAKTGKVLWSIYLTSSPPAG-VRSS-SSPAVDGDRLYVGTS------- 130 (238)
T ss_dssp -GGSGEEEETT-EEEEEETT------SEEEEEETTTSCEEEEEEE-SSCTCS-TB---SEEEEETTEEEEEET-------
T ss_pred -ccceeeeccc-ccccccce------eeeEecccCCcceeeeeccccccccc-cccc-cCceEecCEEEEEec-------
Confidence 1111334454 46655411 26999999999889994 43321221 1222 222333554555432
Q ss_pred cccEEEEEeCCCCeEEEEeCCCCCCC-c------ccceEEEEECCEEEEEcccCCCCCCCCCCceEEEEECCCCc--EEE
Q 003577 157 LADAYGLLMHRNGQWEWTLAPGVAPS-P------RYQHAAVFVGARLHVTGGALRGGRAIEGEAAVAVLDTAAGV--WLD 227 (810)
Q Consensus 157 l~d~~~l~~~~~~~W~~~~~~g~~P~-~------R~~hsav~~~~~l~V~GG~~~~~~~~~~~~~l~~yD~~t~~--W~~ 227 (810)
-..++.++.. +|+-.|.......+. . ......++.++.+|+..+... +..+|.++.+ |+.
T Consensus 131 ~g~l~~~d~~-tG~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~g~----------~~~~d~~tg~~~w~~ 199 (238)
T PF13360_consen 131 SGKLVALDPK-TGKLLWKYPVGEPRGSSPISSFSDINGSPVISDGRVYVSSGDGR----------VVAVDLATGEKLWSK 199 (238)
T ss_dssp CSEEEEEETT-TTEEEEEEESSTT-SS--EEEETTEEEEEECCTTEEEEECCTSS----------EEEEETTTTEEEEEE
T ss_pred cCcEEEEecC-CCcEEEEeecCCCCCCcceeeecccccceEEECCEEEEEcCCCe----------EEEEECCCCCEEEEe
Confidence 1345666643 554333332222111 0 111233444678888765421 5566999886 844
Q ss_pred cccCccCCCCCCCCCCCCCCCCCCcceeeEEEEeCCEEEEEcCCCCCCCCCcEEEEeCCCC
Q 003577 228 RNGLVTSSRTSKGHGEHDPSLELMRRCRHASASIGVRIYIYGGLKGDILLDDFLVAENSPF 288 (810)
Q Consensus 228 v~~~~~~~~~~~~~~~~~~~~~p~~R~~hs~~~~~~~i~I~GG~~~~~~~~Dl~~ld~~~~ 288 (810)
. .. . ........++.+|+.. .+ +.++++|..+-
T Consensus 200 ~-~~--------------------~-~~~~~~~~~~~l~~~~-~~-----~~l~~~d~~tG 232 (238)
T PF13360_consen 200 P-IS--------------------G-IYSLPSVDGGTLYVTS-SD-----GRLYALDLKTG 232 (238)
T ss_dssp C-SS----------------------ECECEECCCTEEEEEE-TT-----TEEEEEETTTT
T ss_pred c-CC--------------------C-ccCCceeeCCEEEEEe-CC-----CEEEEEECCCC
Confidence 3 22 1 1112444567777776 32 45788888764
No 136
>cd07384 MPP_Cdc1_like Saccharomyces cerevisiae CDC1 and related proteins, metallophosphatase domain. Cdc1 (also known as XlCdc1 in Xenopus laevis) is an endoplasmic reticulum-localized transmembrane lipid phosphatase with a metallophosphatase domain facing the ER lumen. In budding yeast, the gene encoding CDC1 is essential while nonlethal mutations cause defects in Golgi inheritance and actin polarization. Cdc1 mutant cells accumulate an unidentified phospholipid, suggesting that Cdc1 is a lipid phosphatase. Cdc1 mutant cells also have highly elevated intracellular calcium levels suggesting a possible role for Cdc1 in calcium regulation. The 5' flanking region of Cdc1 is a regulatory region with conserved binding site motifs for AP1, AP2, Sp1, NF-1 and CREB. DNA polymerase delta consists of at least four subunits - Pol3, Cdc1, Cdc27, and Cdm1. This group also contains Saccharomyces cerevisiae TED1 (Trafficking of Emp24p/Erv25p-dependent cargo disrupted 1), which acts together wit
Probab=94.49 E-value=0.082 Score=52.40 Aligned_cols=44 Identities=30% Similarity=0.360 Sum_probs=28.5
Q ss_pred eEEEeccccCCCCCh--HHHHHHHHHHhhcC--------CCcEEEecCCccccc
Q 003577 541 DYLFLGDYVDRGQHS--LETITLLLALKIEY--------PENVHLIRGNHEAAD 584 (810)
Q Consensus 541 ~~vfLGDyVDRG~~s--~evl~ll~~lk~~~--------p~~v~llrGNHE~~~ 584 (810)
.+||+||++|.+... .+...++..++..+ .-.++++.||||...
T Consensus 48 ~vi~lGDl~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~GNHD~g~ 101 (171)
T cd07384 48 VVLFLGDLFDGGRIADSEEWEEYVKRFKKIFFLPSNGLEDIPVYYVPGNHDIGY 101 (171)
T ss_pred EEEEeccccCCcEeCCHHHHHHHHHHHHHHhcccccccCCceEEEECCccccCC
Confidence 689999999988743 23222332222211 346999999999854
No 137
>PF13360 PQQ_2: PQQ-like domain; PDB: 3HXJ_B 1YIQ_A 1KV9_A 3Q54_A 2YH3_A 3PRW_A 3P1L_A 3Q7M_A 3Q7O_A 3Q7N_A ....
Probab=94.43 E-value=6.8 Score=40.18 Aligned_cols=181 Identities=19% Similarity=0.215 Sum_probs=96.8
Q ss_pred eEEEecCCC--cEEEecCCCCCCccccccEEEEECCEEEEECccCCCCCccCcEEEEEccCCceEEEEEeecCCCCC-cc
Q 003577 2 MFSLENGPA--GVCRIRPAGEPPSPRAAHAAAAVGTMVVFQGGIGPAGHSTDDLYVLDLTNDKFKWHRVVVQGQGPG-PR 78 (810)
Q Consensus 2 l~~~~~~t~--~W~~l~~~g~~P~~R~~haa~~~~~~lyv~GG~~~~~~~~~dl~~lDl~t~~~~W~~v~~~g~~P~-~R 78 (810)
|+.+|..+. .|+.-.+ .+.....+..++.||+..+ .+.++.+|..+.+..|....... .+. .+
T Consensus 48 l~~~d~~tG~~~W~~~~~------~~~~~~~~~~~~~v~v~~~-------~~~l~~~d~~tG~~~W~~~~~~~-~~~~~~ 113 (238)
T PF13360_consen 48 LYALDAKTGKVLWRFDLP------GPISGAPVVDGGRVYVGTS-------DGSLYALDAKTGKVLWSIYLTSS-PPAGVR 113 (238)
T ss_dssp EEEEETTTSEEEEEEECS------SCGGSGEEEETTEEEEEET-------TSEEEEEETTTSCEEEEEEE-SS-CTCSTB
T ss_pred EEEEECCCCCEEEEeecc------ccccceeeecccccccccc-------eeeeEecccCCcceeeeeccccc-cccccc
Confidence 688886544 4766431 1111224666888888762 23799999999888998433221 122 22
Q ss_pred cccEEEEECCcEEEEEccCCCCCCCCcEEEEecCCCCcEEEEecCCCCCCCc--cc--ceEEEEeCCcEEEEEcccCCCC
Q 003577 79 YGHVMDLVSQRYLVSVSGNDGKRVLSDAWALDTAQKPYVWQRLNPEGDRPSA--RM--YATASARSDGMFLLCGGRDASG 154 (810)
Q Consensus 79 ~~Hs~~~v~~~~l~VfGG~~g~~~~ndv~~yd~~~~~~~W~~i~~~g~~P~~--R~--~hsa~~~~~~~l~v~GG~~~~g 154 (810)
......+. +..+|+... -..++++|+++....|+.-........+ .. .-+..+..++.+|++.+...
T Consensus 114 ~~~~~~~~-~~~~~~~~~------~g~l~~~d~~tG~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~g~-- 184 (238)
T PF13360_consen 114 SSSSPAVD-GDRLYVGTS------SGKLVALDPKTGKLLWKYPVGEPRGSSPISSFSDINGSPVISDGRVYVSSGDGR-- 184 (238)
T ss_dssp --SEEEEE-TTEEEEEET------CSEEEEEETTTTEEEEEEESSTT-SS--EEEETTEEEEEECCTTEEEEECCTSS--
T ss_pred cccCceEe-cCEEEEEec------cCcEEEEecCCCcEEEEeecCCCCCCcceeeecccccceEEECCEEEEEcCCCe--
Confidence 33333333 444554432 2468999999888889875432111110 00 11233445567777664431
Q ss_pred CccccEEEEEeCCCCeEEEEeCCCCCCCcccceEEEEECCEEEEEcccCCCCCCCCCCceEEEEECCCCc--EE
Q 003577 155 APLADAYGLLMHRNGQWEWTLAPGVAPSPRYQHAAVFVGARLHVTGGALRGGRAIEGEAAVAVLDTAAGV--WL 226 (810)
Q Consensus 155 ~~l~d~~~l~~~~~~~W~~~~~~g~~P~~R~~hsav~~~~~l~V~GG~~~~~~~~~~~~~l~~yD~~t~~--W~ 226 (810)
+..+ +..+++-.|...... ........++.+|+.. . . ..++++|.++++ |.
T Consensus 185 -----~~~~-d~~tg~~~w~~~~~~-----~~~~~~~~~~~l~~~~-~-~--------~~l~~~d~~tG~~~W~ 237 (238)
T PF13360_consen 185 -----VVAV-DLATGEKLWSKPISG-----IYSLPSVDGGTLYVTS-S-D--------GRLYALDLKTGKVVWQ 237 (238)
T ss_dssp -----EEEE-ETTTTEEEEEECSS------ECECEECCCTEEEEEE-T-T--------TEEEEEETTTTEEEEE
T ss_pred -----EEEE-ECCCCCEEEEecCCC-----ccCCceeeCCEEEEEe-C-C--------CEEEEEECCCCCEEeE
Confidence 5666 445665334222211 1122344567777765 2 1 239999998875 64
No 138
>cd07380 MPP_CWF19_N Schizosaccharomyces pombe CWF19 and related proteins, N-terminal metallophosphatase domain. CWF19 cell cycle control protein (also known as CWF19-like 1 (CWF19L1) in Homo sapiens), N-terminal metallophosphatase domain. CWF19 contains C-terminal domains similar to that found in the CwfJ cell cycle control protein. The metallophosphatase domain belongs to the metallophosphatase (MPP) superfamily. MPPs are functionally diverse, but all share a conserved domain with an active site consisting of two metal ions (usually manganese, iron, or zinc) coordinated with octahedral geometry by a cage of histidine, aspartate, and asparagine residues. The MPP superfamily includes: Mre11/SbcD-like exonucleases, Dbr1-like RNA lariat debranching enzymes, YfcE-like phosphodiesterases, purple acid phosphatases (PAPs), YbbF-like UDP-2,3-diacylglucosamine hydrolases, and acid sphingomyelinases (ASMases). The conserved domain is a double beta-sheet sandwich with a di-metal active site
Probab=94.38 E-value=0.093 Score=50.71 Aligned_cols=68 Identities=19% Similarity=0.306 Sum_probs=47.8
Q ss_pred EEEecCCCCHHHHHHHHHHhCCCCCCCCcceeeEEEeccccCCCCChHHHHHHHHHHhhcCCCcEEEecCCcc
Q 003577 509 KVFGDLHGQFGDLMRLFDEYGFPSTAGDITYIDYLFLGDYVDRGQHSLETITLLLALKIEYPENVHLIRGNHE 581 (810)
Q Consensus 509 ~vvGDiHG~~~~L~~~l~~~~~~~~~~~~~~~~~vfLGDyVDRG~~s~evl~ll~~lk~~~p~~v~llrGNHE 581 (810)
.|+||+||+++.+..-++...-. .+ ...-+|++||+..-....-+.-.++ .=+.+.|--.+++-||||
T Consensus 1 LV~G~~~G~l~~~~~kv~~~~~k--~g--pFd~~ic~Gdff~~~~~~~~~~~y~-~g~~~~pipTyf~ggn~~ 68 (150)
T cd07380 1 LVCGDVNGRLKALFEKVNTINKK--KG--PFDALLCVGDFFGDDEDDEELEAYK-DGSKKVPIPTYFLGGNNP 68 (150)
T ss_pred CeeecCCccHHHHHHHHHHHhcc--cC--CeeEEEEecCccCCccchhhHHHHh-cCCccCCCCEEEECCCCC
Confidence 48999999999998888775322 12 1225778999997665553433333 334567788999999998
No 139
>cd08166 MPP_Cdc1_like_1 uncharacterized subgroup related to Saccharomyces cerevisiae CDC1, metallophosphatase domain. A functionally uncharacterized subgroup related to the metallophosphatase domain of Saccharomyces cerevisiae Cdc1, S. cerevisiae Ted1 and human MPPE1. Cdc1 is an endoplasmic reticulum-localized transmembrane lipid phosphatase and is a subunit of DNA polymerase delta. TED1 (trafficking of Emp24p/Erv25p-dependent cargo disrupted 1), acts together with Emp24p and Erv25p in cargo exit from the ER. The MPPE1 gene is a candidate susceptibility gene for Bipolar disorder. Proteins in this uncharacterized subgroup belong to the metallophosphatase (MPP) superfamily. MPPs are functionally diverse, but all share a conserved domain with an active site consisting of two metal ions (usually manganese, iron, or zinc) coordinated with octahedral geometry by a cage of histidine, aspartate, and asparagine residues. The MPP superfamily includes: Mre11/SbcD-like exonucleases, Dbr1-like R
Probab=94.18 E-value=0.055 Score=54.44 Aligned_cols=43 Identities=19% Similarity=0.355 Sum_probs=32.0
Q ss_pred eEEEeccccCCCCCh--HHHHHHHHHHhhcCC----CcEEEecCCcccc
Q 003577 541 DYLFLGDYVDRGQHS--LETITLLLALKIEYP----ENVHLIRGNHEAA 583 (810)
Q Consensus 541 ~~vfLGDyVDRG~~s--~evl~ll~~lk~~~p----~~v~llrGNHE~~ 583 (810)
-++||||++|.|+.+ .|.+..+..++..|+ -.++.|.||||.-
T Consensus 45 ~Vi~lGDL~D~G~~~~~~e~~e~l~Rf~~If~~~~~~~~~~VpGNHDIG 93 (195)
T cd08166 45 IVIFLGDLMDEGSIANDDEYYSYVQRFINIFEVPNGTKIIYLPGDNDIG 93 (195)
T ss_pred EEEEeccccCCCCCCCHHHHHHHHHHHHHHhcCCCCCcEEEECCCCCcC
Confidence 689999999999853 346666666654433 4688999999974
No 140
>COG1409 Icc Predicted phosphohydrolases [General function prediction only]
Probab=94.13 E-value=0.17 Score=54.14 Aligned_cols=74 Identities=26% Similarity=0.354 Sum_probs=49.0
Q ss_pred CeEEEecCCCC------HHHHHHHHHHhCCCCCCCCcceeeEEEeccccCCCC-ChHHHHHHHHHHhhcCCCcEEEecCC
Q 003577 507 PVKVFGDLHGQ------FGDLMRLFDEYGFPSTAGDITYIDYLFLGDYVDRGQ-HSLETITLLLALKIEYPENVHLIRGN 579 (810)
Q Consensus 507 pi~vvGDiHG~------~~~L~~~l~~~~~~~~~~~~~~~~~vfLGDyVDRG~-~s~evl~ll~~lk~~~p~~v~llrGN 579 (810)
.+..|+|+|-- ...+..+++.+.....+ -+|+.||+.++|. ...+-+..++. +...|..+++++||
T Consensus 2 ~i~~isD~H~~~~~~~~~~~~~~~~~~i~~~~~D------~~v~tGDl~~~~~~~~~~~~~~~l~-~~~~~~~~~~vpGN 74 (301)
T COG1409 2 RIAHISDLHLGALGVDSEELLEALLAAIEQLKPD------LLVVTGDLTNDGEPEEYRRLKELLA-RLELPAPVIVVPGN 74 (301)
T ss_pred eEEEEecCcccccccchHHHHHHHHHHHhcCCCC------EEEEccCcCCCCCHHHHHHHHHHHh-hccCCCceEeeCCC
Confidence 47889999976 34555666666633333 6899999999963 22222222222 23677889999999
Q ss_pred ccccchhh
Q 003577 580 HEAADINA 587 (810)
Q Consensus 580 HE~~~~~~ 587 (810)
||....+.
T Consensus 75 HD~~~~~~ 82 (301)
T COG1409 75 HDARVVNG 82 (301)
T ss_pred CcCCchHH
Confidence 99876653
No 141
>COG4186 Predicted phosphoesterase or phosphohydrolase [General function prediction only]
Probab=94.00 E-value=0.23 Score=47.25 Aligned_cols=54 Identities=19% Similarity=0.296 Sum_probs=33.7
Q ss_pred eEEEeccccCCCCChHHHHHHHHHHhhcCCCcEEEecCCccccchhhccCChHHHHHhh
Q 003577 541 DYLFLGDYVDRGQHSLETITLLLALKIEYPENVHLIRGNHEAADINALFGFRLECIERM 599 (810)
Q Consensus 541 ~~vfLGDyVDRG~~s~evl~ll~~lk~~~p~~v~llrGNHE~~~~~~~~gf~~e~~~~~ 599 (810)
.+.+|||+.-.-..--+...++-+| |++++|++||||--.-....+| .+..+.|
T Consensus 48 ~lwhLGDl~~~~n~~~~a~~IlerL----nGrkhlv~GNhDk~~~~~~~~~-~~svq~f 101 (186)
T COG4186 48 VLWHLGDLSSGANRERAAGLILERL----NGRKHLVPGNHDKCHPMYRHAY-FDSVQAF 101 (186)
T ss_pred eEEEecccccccchhhHHHHHHHHc----CCcEEEeeCCCCCCcccccchh-hHHHHHH
Confidence 6889999986544444444444443 6899999999997544333333 3334444
No 142
>COG1408 Predicted phosphohydrolases [General function prediction only]
Probab=93.64 E-value=0.16 Score=54.56 Aligned_cols=71 Identities=24% Similarity=0.253 Sum_probs=46.1
Q ss_pred CCeEEEecCCCCHHH--HHHHHHHhCCCCCCCCcceeeEEEeccccCC-CCChH-HHHHHHHHHhhcCCCcEEEecCCcc
Q 003577 506 APVKVFGDLHGQFGD--LMRLFDEYGFPSTAGDITYIDYLFLGDYVDR-GQHSL-ETITLLLALKIEYPENVHLIRGNHE 581 (810)
Q Consensus 506 ~pi~vvGDiHG~~~~--L~~~l~~~~~~~~~~~~~~~~~vfLGDyVDR-G~~s~-evl~ll~~lk~~~p~~v~llrGNHE 581 (810)
.+|+.+.|+|-.... ..+.+........+ -+++.|||+|+ .+... .++..|..|+ .|-.+|.+-||||
T Consensus 45 ~~iv~lSDlH~~~~~~~~~~~~~~i~~~~~D------livltGD~~~~~~~~~~~~~~~~L~~L~--~~~gv~av~GNHd 116 (284)
T COG1408 45 LKIVQLSDLHSLPFREEKLALLIAIANELPD------LIVLTGDYVDGDRPPGVAALALFLAKLK--APLGVFAVLGNHD 116 (284)
T ss_pred eEEEEeehhhhchhhHHHHHHHHHHHhcCCC------EEEEEeeeecCCCCCCHHHHHHHHHhhh--ccCCEEEEecccc
Confidence 358999999977654 22233332222222 68889999996 55444 4455666665 4457999999998
Q ss_pred ccc
Q 003577 582 AAD 584 (810)
Q Consensus 582 ~~~ 584 (810)
...
T Consensus 117 ~~~ 119 (284)
T COG1408 117 YGV 119 (284)
T ss_pred ccc
Confidence 654
No 143
>COG1407 Predicted ICC-like phosphoesterases [General function prediction only]
Probab=93.32 E-value=0.32 Score=50.10 Aligned_cols=71 Identities=24% Similarity=0.307 Sum_probs=43.9
Q ss_pred cCCeEEEecCCCCHHHHH----------------HHHHHh--CCCCCCCCcceeeEEEeccccCCCC-----ChHHHHHH
Q 003577 505 RAPVKVFGDLHGQFGDLM----------------RLFDEY--GFPSTAGDITYIDYLFLGDYVDRGQ-----HSLETITL 561 (810)
Q Consensus 505 ~~pi~vvGDiHG~~~~L~----------------~~l~~~--~~~~~~~~~~~~~~vfLGDyVDRG~-----~s~evl~l 561 (810)
...+.||.|+|=-|+.-+ +.+..+ .+.+ .++|++||.-.-.+ ...|+-.+
T Consensus 19 ~~~~lVvADlHlG~e~~~~r~Gi~lP~~~~~~~~~~l~~ii~~~~p-------~~lIilGD~KH~~~~~~~~e~~~~~~f 91 (235)
T COG1407 19 LGRTLVVADLHLGYEESLARRGINLPRYQTDRILKRLDRIIERYGP-------KRLIILGDLKHEFGKSLRQEKEEVREF 91 (235)
T ss_pred cCcEEEEEecccchhHHHHhcCcccCchhHHHHHHHHHHHHHhcCC-------CEEEEcCccccccCccccccHHHHHHH
Confidence 468999999996554433 222211 1112 17999999985333 33455555
Q ss_pred HHHHhhcCCCcEEEecCCccccch
Q 003577 562 LLALKIEYPENVHLIRGNHEAADI 585 (810)
Q Consensus 562 l~~lk~~~p~~v~llrGNHE~~~~ 585 (810)
+-.++.. .+.++|||||...-
T Consensus 92 ~~~~~~~---evi~i~GNHD~~i~ 112 (235)
T COG1407 92 LELLDER---EVIIIRGNHDNGIE 112 (235)
T ss_pred HHHhccC---cEEEEeccCCCccc
Confidence 5544433 59999999998543
No 144
>cd08164 MPP_Ted1 Saccharomyces cerevisiae Ted1 and related proteins, metallophosphatase domain. Saccharomyces cerevisiae Ted1 (trafficking of Emp24p/Erv25p-dependent cargo disrupted 1) is a metallophosphatase domain-containing protein which acts together with Emp24p and Erv25p in cargo exit from the ER. Ted1 belongs to the metallophosphatase (MPP) superfamily. MPPs are functionally diverse, but all share a conserved domain with an active site consisting of two metal ions (usually manganese, iron, or zinc) coordinated with octahedral geometry by a cage of histidine, aspartate, and asparagine residues. The MPP superfamily includes: Mre11/SbcD-like exonucleases, Dbr1-like RNA lariat debranching enzymes, YfcE-like phosphodiesterases, purple acid phosphatases (PAPs), YbbF-like UDP-2,3-diacylglucosamine hydrolases, and acid sphingomyelinases (ASMases). The conserved domain is a double beta-sheet sandwich with a di-metal active site made up of residues located at the C-terminal side of the
Probab=92.89 E-value=0.24 Score=49.87 Aligned_cols=65 Identities=20% Similarity=0.124 Sum_probs=39.8
Q ss_pred cCCCCHHHHHHHHHHhCCCCCCCCcceeeEEEeccccCCCCCh-HHHHHHHHHHhhcC-C--------------------
Q 003577 513 DLHGQFGDLMRLFDEYGFPSTAGDITYIDYLFLGDYVDRGQHS-LETITLLLALKIEY-P-------------------- 570 (810)
Q Consensus 513 DiHG~~~~L~~~l~~~~~~~~~~~~~~~~~vfLGDyVDRG~~s-~evl~ll~~lk~~~-p-------------------- 570 (810)
|++|+=.=|.++++.+...-.- ..++||||++|.|--+ -|--.....++..+ +
T Consensus 24 d~~~~D~YL~~~~~~~~~~l~P-----d~V~fLGDLfd~~w~~D~ef~~~~~RF~~if~~~~~~~~~~~~~~~~~~~~~~ 98 (193)
T cd08164 24 DLFGNDYFLGHIVSMMQFWLKP-----DAVVVLGDLFSSQWIDDEEFAKRADRYRRRFFGRNDWQVGNISLAARTFEDGK 98 (193)
T ss_pred hhhhhHHHHHHHHHHHHHhcCC-----CEEEEeccccCCCcccHHHHHHHHHHHHHHhcCCcccccccccccccccccCC
Confidence 4456666677777665432111 1688999999987533 23334444444433 1
Q ss_pred CcEEEecCCccc
Q 003577 571 ENVHLIRGNHEA 582 (810)
Q Consensus 571 ~~v~llrGNHE~ 582 (810)
-.+++|.||||.
T Consensus 99 i~~i~V~GNHDI 110 (193)
T cd08164 99 TPLINIAGNHDV 110 (193)
T ss_pred ceEEEECCcccC
Confidence 356889999998
No 145
>cd00845 MPP_UshA_N_like Escherichia coli UshA-like family, N-terminal metallophosphatase domain. This family includes the bacterial enzyme UshA, and related enzymes including SoxB, CpdB, YhcR, and CD73. All members have a similar domain architecture which includes an N-terminal metallophosphatase domain and a C-terminal nucleotidase domain. The N-terminal metallophosphatase domain belongs to a large superfamily of distantly related metallophosphatases (MPPs) that includes: Mre11/SbcD-like exonucleases, Dbr1-like RNA lariat debranching enzymes, YfcE-like phosphodiesterases, purple acid phosphatases (PAPs), YbbF-like UDP-2,3-diacylglucosamine hydrolases, and acid sphingomyelinases (ASMases). MPPs are functionally diverse, but all share a conserved domain with an active site consisting of two metal ions (usually manganese, iron, or zinc) coordinated with octahedral geometry by a cage of histidine, aspartate, and asparagine residues. The conserved domain is a double beta-sheet sandwich
Probab=92.65 E-value=0.22 Score=52.38 Aligned_cols=66 Identities=32% Similarity=0.332 Sum_probs=41.4
Q ss_pred CeEEEecCCCCH---------HHHHHHHHHhCCCCCCCCcceeeEEEeccccCCCCChH-----HHHHHHHHHhhcCCCc
Q 003577 507 PVKVFGDLHGQF---------GDLMRLFDEYGFPSTAGDITYIDYLFLGDYVDRGQHSL-----ETITLLLALKIEYPEN 572 (810)
Q Consensus 507 pi~vvGDiHG~~---------~~L~~~l~~~~~~~~~~~~~~~~~vfLGDyVDRG~~s~-----evl~ll~~lk~~~p~~ 572 (810)
.|+.++|+||.+ ..|.++++...-...+ .-+|..||+++....+- .++..|-++. -
T Consensus 2 ~i~~~sD~hg~~~~~~~~~g~~~l~~~v~~~~~~~~~-----~l~v~~GD~~~~~~~~~~~~~~~~~~~l~~~g-----~ 71 (252)
T cd00845 2 TILHTNDLHGHFEPAGGVGGAARLATLIKEERAENEN-----TLLLDAGDNFDGSPPSTATKGEANIELMNALG-----Y 71 (252)
T ss_pred EEEEecccccCccccCCcCCHHHHHHHHHHHHhcCCC-----eEEEeCCccCCCccchhccCCcHHHHHHHhcC-----C
Confidence 478899999887 4556666665322111 14567999999887643 4444444432 2
Q ss_pred EEEecCCccc
Q 003577 573 VHLIRGNHEA 582 (810)
Q Consensus 573 v~llrGNHE~ 582 (810)
.++..||||.
T Consensus 72 d~~~~GNHe~ 81 (252)
T cd00845 72 DAVTIGNHEF 81 (252)
T ss_pred CEEeeccccc
Confidence 3345699996
No 146
>TIGR03300 assembly_YfgL outer membrane assembly lipoprotein YfgL. Members of this protein family are YfgL, a lipoprotein component of a complex that acts protein insertion into the bacterial outer membrane. Other members of this complex are NlpB, YfiO, and YaeT. This protein contains multiple copies of a repeat that, in other contexts, are associated with binding of the coenzyme PQQ.
Probab=91.56 E-value=26 Score=38.98 Aligned_cols=155 Identities=15% Similarity=0.217 Sum_probs=81.9
Q ss_pred cEEEEECCEEEEECccCCCCCccCcEEEEEccCCceEEEEEeecCCCCCcccccEEEEECCcEEEEEccCCCCCCCCcEE
Q 003577 28 HAAAAVGTMVVFQGGIGPAGHSTDDLYVLDLTNDKFKWHRVVVQGQGPGPRYGHVMDLVSQRYLVSVSGNDGKRVLSDAW 107 (810)
Q Consensus 28 haa~~~~~~lyv~GG~~~~~~~~~dl~~lDl~t~~~~W~~v~~~g~~P~~R~~Hs~~~v~~~~l~VfGG~~g~~~~ndv~ 107 (810)
.+.+..++.||+.+.. ..+++||..+.+..|..-... . ...+. ++.++.+|+ |+.+ ..++
T Consensus 59 ~~p~v~~~~v~v~~~~-------g~v~a~d~~tG~~~W~~~~~~-----~-~~~~p-~v~~~~v~v-~~~~-----g~l~ 118 (377)
T TIGR03300 59 LQPAVAGGKVYAADAD-------GTVVALDAETGKRLWRVDLDE-----R-LSGGV-GADGGLVFV-GTEK-----GEVI 118 (377)
T ss_pred cceEEECCEEEEECCC-------CeEEEEEccCCcEeeeecCCC-----C-cccce-EEcCCEEEE-EcCC-----CEEE
Confidence 3445668888886643 469999999888889753321 1 11122 345555665 4433 3689
Q ss_pred EEecCCCCcEEEEecCCCCCCCcccceEEEEeCCcEEEEEcccCCCCCccccEEEEEeCCCCeEEEEeCCCCCC-Ccccc
Q 003577 108 ALDTAQKPYVWQRLNPEGDRPSARMYATASARSDGMFLLCGGRDASGAPLADAYGLLMHRNGQWEWTLAPGVAP-SPRYQ 186 (810)
Q Consensus 108 ~yd~~~~~~~W~~i~~~g~~P~~R~~hsa~~~~~~~l~v~GG~~~~g~~l~d~~~l~~~~~~~W~~~~~~g~~P-~~R~~ 186 (810)
+||.++....|+.-.. +. .. +..++.++.+|+..+ + ..++.++.. +++-.|.......+ ..+..
T Consensus 119 ald~~tG~~~W~~~~~-~~-----~~-~~p~v~~~~v~v~~~---~----g~l~a~d~~-tG~~~W~~~~~~~~~~~~~~ 183 (377)
T TIGR03300 119 ALDAEDGKELWRAKLS-SE-----VL-SPPLVANGLVVVRTN---D----GRLTALDAA-TGERLWTYSRVTPALTLRGS 183 (377)
T ss_pred EEECCCCcEeeeeccC-ce-----ee-cCCEEECCEEEEECC---C----CeEEEEEcC-CCceeeEEccCCCceeecCC
Confidence 9999888778975422 11 11 122234555665432 1 235666653 44433332221111 11222
Q ss_pred eEEEEECCEEEEEcccCCCCCCCCCCceEEEEECCCC--cEEE
Q 003577 187 HAAVFVGARLHVTGGALRGGRAIEGEAAVAVLDTAAG--VWLD 227 (810)
Q Consensus 187 hsav~~~~~l~V~GG~~~~~~~~~~~~~l~~yD~~t~--~W~~ 227 (810)
.+.+..++.+| +|... ..++.+|.+++ .|+.
T Consensus 184 ~sp~~~~~~v~-~~~~~---------g~v~ald~~tG~~~W~~ 216 (377)
T TIGR03300 184 ASPVIADGGVL-VGFAG---------GKLVALDLQTGQPLWEQ 216 (377)
T ss_pred CCCEEECCEEE-EECCC---------CEEEEEEccCCCEeeee
Confidence 34455566544 33321 13889998776 4764
No 147
>COG1311 HYS2 Archaeal DNA polymerase II, small subunit/DNA polymerase delta, subunit B [DNA replication, recombination, and repair]
Probab=91.30 E-value=5.2 Score=45.32 Aligned_cols=212 Identities=19% Similarity=0.188 Sum_probs=106.2
Q ss_pred CeEEEecCCC-CH----HHHHHHHHHhCCCCCCCCcceeeEEE-eccccCCC------------CChHHHHHHHHHHhhc
Q 003577 507 PVKVFGDLHG-QF----GDLMRLFDEYGFPSTAGDITYIDYLF-LGDYVDRG------------QHSLETITLLLALKIE 568 (810)
Q Consensus 507 pi~vvGDiHG-~~----~~L~~~l~~~~~~~~~~~~~~~~~vf-LGDyVDRG------------~~s~evl~ll~~lk~~ 568 (810)
.+.+++|+|= .. +.+..+++.++-+.+ -....+|+. -||.||-. .+..|-...+..+--+
T Consensus 227 ~v~~isDih~GSk~F~~~~f~~fi~wl~g~~~--~a~~vkyliiagd~VDGigiYpgq~~eL~i~di~~qy~~~A~~L~~ 304 (481)
T COG1311 227 YVALISDIHRGSKEFLEDEFEKFIDWLNGPGD--LASRVKYLIIAGDVVDGIGIYPGQEEELVIADIYEQYEELAEFLDQ 304 (481)
T ss_pred EEEEEeeeecccHHHHHHHHHHHHHHhcCCcc--cccceEEEEEecccccccccccCcccccccccchHHHHHHHHHHhh
Confidence 4889999995 22 233344444443321 112336666 77999942 1333444555555445
Q ss_pred CCC--cEEEecCCccccchhhccCChHHHHHhhCCCCccccccccccccccCceeEEEcC-cEEEecCCcCCcccchhhh
Q 003577 569 YPE--NVHLIRGNHEAADINALFGFRLECIERMGENDGIWAWTRFNQLFNCLPLAALIEK-KIICMHGGIGRSIHSVEQI 645 (810)
Q Consensus 569 ~p~--~v~llrGNHE~~~~~~~~gf~~e~~~~~~~~~~~~~~~~~~~~f~~lPla~~i~~-~il~vHgGi~~~~~~~~~i 645 (810)
-|. .|++.+|||+..-...-.-...|... .++...+-.|-.=|...-+++ .+|..|| .+++||
T Consensus 305 vp~~I~v~i~PGnhDa~r~a~PQp~~~~~~k--------slf~~~n~~~v~NP~~~~l~G~~vL~~hG------~sidDi 370 (481)
T COG1311 305 VPEHIKVFIMPGNHDAVRQALPQPHFPELIK--------SLFSLNNLLFVSNPALVSLHGVDVLIYHG------RSIDDI 370 (481)
T ss_pred CCCCceEEEecCCCCccccccCCCCcchhhc--------ccccccceEecCCCcEEEECCEEEEEecC------CCHHHH
Confidence 555 47889999998655433222222211 122222222222244444443 6778887 567777
Q ss_pred hcccCCcccCCCchhhhh-hccCCCCCCCCCCCCCcCCCCCceeeeCHHHHHHHHHhcCCcEEEEeccccccceEEecCC
Q 003577 646 EKLERPITMDAGSIILMD-LLWSDPTENDSIEGLRPNARGPGLVTFGPDRVSDFCKRNKLQLIIRAHECVMDGFERFAQG 724 (810)
Q Consensus 646 ~~~~rp~~~~~~~~~~~d-llWsdP~~~~~~~~~~~~~rg~~~~~fg~~~~~~fl~~~~l~~iiR~H~~~~~G~~~~~~~ 724 (810)
...-.....+.-...+.. |.|.--... ..|-.+. +-|.+|. |.=.---++++-||+.. .|+..+.+.
T Consensus 371 i~~vP~~~~~~~~~ame~lLk~rHlaPt--ygg~~p~------aP~~kD~---lVIeevPDv~~~Ghvh~-~g~~~y~gv 438 (481)
T COG1311 371 IKLVPGADYDSPLKAMEELLKRRHLAPT--YGGTLPI------APETKDY---LVIEEVPDVFHTGHVHK-FGTGVYEGV 438 (481)
T ss_pred HhhCCCCCccchHHHHHHHHHhcccCCC--CCCcccc------ccCCcCc---eeeccCCcEEEEccccc-cceeEEecc
Confidence 665443332221112222 335432211 0111110 0111110 11111246778899887 788888888
Q ss_pred eEEEEEccCCCCCCCCCeEEEEEEcC
Q 003577 725 QLITLFSATNYCGTANNAGAILVVGR 750 (810)
Q Consensus 725 ~~itvfSa~~y~~~~~n~ga~l~~~~ 750 (810)
++|..++-+.+.. .+-++.|+.
T Consensus 439 ~~vns~T~q~qTe----fqk~vni~p 460 (481)
T COG1311 439 NLVNSGTWQEQTE----FQKMVNINP 460 (481)
T ss_pred ceEEeeeecchhc----cceEEEecC
Confidence 9998888877653 234554443
No 148
>PF14582 Metallophos_3: Metallophosphoesterase, calcineurin superfamily; PDB: 1UF3_B 2YVT_A.
Probab=91.17 E-value=0.32 Score=49.51 Aligned_cols=72 Identities=22% Similarity=0.298 Sum_probs=43.1
Q ss_pred CCeEEEecCCCCHHHHHHHHHHhCCCCCCCCcceeeEEEeccccCCCCChHHHH--------------------------
Q 003577 506 APVKVFGDLHGQFGDLMRLFDEYGFPSTAGDITYIDYLFLGDYVDRGQHSLETI-------------------------- 559 (810)
Q Consensus 506 ~pi~vvGDiHG~~~~L~~~l~~~~~~~~~~~~~~~~~vfLGDyVDRG~~s~evl-------------------------- 559 (810)
..|..+.|.||+++.|.++.+.+.-...+ -++|+||++-....+-|-.
T Consensus 6 ~kilA~s~~~g~~e~l~~l~~~~~e~~~D------~~v~~G~~~~~~a~~~e~~~a~~~~r~p~k~~i~~e~~~~~e~~~ 79 (255)
T PF14582_consen 6 RKILAISNFRGDFELLERLVEVIPEKGPD------AVVFVGDLLKAEARSDEYERAQEEQREPDKSEINEEECYDSEALD 79 (255)
T ss_dssp -EEEEEE--TT-HHHHHHHHHHHHHHT-S------EEEEES-SS-TCHHHHHHHHHHHTT----THHHHHHHHHHHHHHH
T ss_pred hhheeecCcchHHHHHHHHHhhccccCCC------EEEEeccccccchhhhHHHHHhhhccCcchhhhhhhhhhhHHHHH
Confidence 35899999999999999988765433222 6999999997665554444
Q ss_pred HHHHHHhhcCCCcEEEecCCccccc
Q 003577 560 TLLLALKIEYPENVHLIRGNHEAAD 584 (810)
Q Consensus 560 ~ll~~lk~~~p~~v~llrGNHE~~~ 584 (810)
.++..| -..+--+++|+||||...
T Consensus 80 ~ff~~L-~~~~~p~~~vPG~~Dap~ 103 (255)
T PF14582_consen 80 KFFRIL-GELGVPVFVVPGNMDAPE 103 (255)
T ss_dssp HHHHHH-HCC-SEEEEE--TTS-SH
T ss_pred HHHHHH-HhcCCcEEEecCCCCchH
Confidence 333333 344557999999999854
No 149
>PF07893 DUF1668: Protein of unknown function (DUF1668); InterPro: IPR012871 The hypothetical proteins found in this family are expressed by Oryza sativa (Rice) and are of unknown function.
Probab=89.80 E-value=7.6 Score=43.02 Aligned_cols=120 Identities=16% Similarity=0.211 Sum_probs=66.0
Q ss_pred CcEEEEEccCCCCCCCCcEEEEecCCCCcEEEEecCCCCCCCcccceEEEEeCCcEEEEEcccCCCCCc------cccEE
Q 003577 88 QRYLVSVSGNDGKRVLSDAWALDTAQKPYVWQRLNPEGDRPSARMYATASARSDGMFLLCGGRDASGAP------LADAY 161 (810)
Q Consensus 88 ~~~l~VfGG~~g~~~~ndv~~yd~~~~~~~W~~i~~~g~~P~~R~~hsa~~~~~~~l~v~GG~~~~g~~------l~d~~ 161 (810)
+..|+..+.. ..+.+||+++. .-. ....++.+...-.+..++++ ||+.......... .-...
T Consensus 76 gskIv~~d~~------~~t~vyDt~t~--av~---~~P~l~~pk~~pisv~VG~~-LY~m~~~~~~~~~~~~~~~~FE~l 143 (342)
T PF07893_consen 76 GSKIVAVDQS------GRTLVYDTDTR--AVA---TGPRLHSPKRCPISVSVGDK-LYAMDRSPFPEPAGRPDFPCFEAL 143 (342)
T ss_pred CCeEEEEcCC------CCeEEEECCCC--eEe---ccCCCCCCCcceEEEEeCCe-EEEeeccCccccccCccceeEEEe
Confidence 3446655433 33788999887 333 22224444444445556666 8887766433111 11122
Q ss_pred EEE-----eCCCCeEEEEeCCCCCCCcccc-------eEEEEE-CCEEEEE-cccCCCCCCCCCCceEEEEECCCCcEEE
Q 003577 162 GLL-----MHRNGQWEWTLAPGVAPSPRYQ-------HAAVFV-GARLHVT-GGALRGGRAIEGEAAVAVLDTAAGVWLD 227 (810)
Q Consensus 162 ~l~-----~~~~~~W~~~~~~g~~P~~R~~-------hsav~~-~~~l~V~-GG~~~~~~~~~~~~~l~~yD~~t~~W~~ 227 (810)
.+. ......|.|...+. +|-.+.. .+.+++ +..|+|. -|.. ...|.||+++.+|++
T Consensus 144 ~~~~~~~~~~~~~~w~W~~LP~-PPf~~~~~~~~~~i~sYavv~g~~I~vS~~~~~---------~GTysfDt~~~~W~~ 213 (342)
T PF07893_consen 144 VYRPPPDDPSPEESWSWRSLPP-PPFVRDRRYSDYRITSYAVVDGRTIFVSVNGRR---------WGTYSFDTESHEWRK 213 (342)
T ss_pred ccccccccccCCCcceEEcCCC-CCccccCCcccceEEEEEEecCCeEEEEecCCc---------eEEEEEEcCCcceee
Confidence 222 12355899988765 3443332 233445 6678873 3321 127999999999999
Q ss_pred cc
Q 003577 228 RN 229 (810)
Q Consensus 228 v~ 229 (810)
+.
T Consensus 214 ~G 215 (342)
T PF07893_consen 214 HG 215 (342)
T ss_pred cc
Confidence 75
No 150
>PLN02533 probable purple acid phosphatase
Probab=89.35 E-value=0.6 Score=53.29 Aligned_cols=25 Identities=8% Similarity=0.312 Sum_probs=20.8
Q ss_pred HHHHHHHHHhcCCcEEEEecccccc
Q 003577 692 PDRVSDFCKRNKLQLIIRAHECVMD 716 (810)
Q Consensus 692 ~~~~~~fl~~~~l~~iiR~H~~~~~ 716 (810)
.+.++..++++++++++-||.-..+
T Consensus 311 r~~le~Ll~~~~VdlvlsGH~H~Ye 335 (427)
T PLN02533 311 KESMETLLYKARVDLVFAGHVHAYE 335 (427)
T ss_pred HHHHHHHHHHhCCcEEEecceeccc
Confidence 3578889999999999999987533
No 151
>cd00216 PQQ_DH Dehydrogenases with pyrrolo-quinoline quinone (PQQ) as cofactor, like ethanol, methanol, and membrane bound glucose dehydrogenases. The alignment model contains an 8-bladed beta-propeller.
Probab=88.35 E-value=57 Score=38.01 Aligned_cols=83 Identities=18% Similarity=0.161 Sum_probs=45.9
Q ss_pred CCEEEEECccCC-----------CCCccCcEEEEEccCCceEEEEEeecCCCCCcccccEEEE-----ECCc--EEEEEc
Q 003577 34 GTMVVFQGGIGP-----------AGHSTDDLYVLDLTNDKFKWHRVVVQGQGPGPRYGHVMDL-----VSQR--YLVSVS 95 (810)
Q Consensus 34 ~~~lyv~GG~~~-----------~~~~~~dl~~lDl~t~~~~W~~v~~~g~~P~~R~~Hs~~~-----v~~~--~l~VfG 95 (810)
++.||+..|.+. .....+.++.+|..+.+..|+.-....+...-+...+.++ +++. .++++|
T Consensus 228 ~g~V~vg~~~g~~~~~~~~~~~~~~~~~~~l~Ald~~tG~~~W~~~~~~~~~~~~~~~s~p~~~~~~~~~g~~~~~V~~g 307 (488)
T cd00216 228 TNLVYVGTGNGSPWNWGGRRTPGDNLYTDSIVALDADTGKVKWFYQTTPHDLWDYDGPNQPSLADIKPKDGKPVPAIVHA 307 (488)
T ss_pred CCEEEEECCCCCCCccCCccCCCCCCceeeEEEEcCCCCCEEEEeeCCCCCCcccccCCCCeEEeccccCCCeeEEEEEE
Confidence 467888765431 1223457999999999899986322110000011111111 1111 234455
Q ss_pred cCCCCCCCCcEEEEecCCCCcEEEEe
Q 003577 96 GNDGKRVLSDAWALDTAQKPYVWQRL 121 (810)
Q Consensus 96 G~~g~~~~ndv~~yd~~~~~~~W~~i 121 (810)
..++ .++.||.++....|+.-
T Consensus 308 ~~~G-----~l~ald~~tG~~~W~~~ 328 (488)
T cd00216 308 PKNG-----FFYVLDRTTGKLISARP 328 (488)
T ss_pred CCCc-----eEEEEECCCCcEeeEeE
Confidence 5443 38999999998889864
No 152
>cd00216 PQQ_DH Dehydrogenases with pyrrolo-quinoline quinone (PQQ) as cofactor, like ethanol, methanol, and membrane bound glucose dehydrogenases. The alignment model contains an 8-bladed beta-propeller.
Probab=88.31 E-value=57 Score=37.99 Aligned_cols=120 Identities=14% Similarity=0.098 Sum_probs=60.4
Q ss_pred eEEEecC--CCcEEEecCCCCCCccccccEEEEECCEEEEECccCCC--CCccCcEEEEEccCCceEEEEEeecCCC---
Q 003577 2 MFSLENG--PAGVCRIRPAGEPPSPRAAHAAAAVGTMVVFQGGIGPA--GHSTDDLYVLDLTNDKFKWHRVVVQGQG--- 74 (810)
Q Consensus 2 l~~~~~~--t~~W~~l~~~g~~P~~R~~haa~~~~~~lyv~GG~~~~--~~~~~dl~~lDl~t~~~~W~~v~~~g~~--- 74 (810)
|+.+|.. ...|+.-......+......+.++.++.+|+....... ......++.||..|.+..|..-......
T Consensus 122 v~AlD~~TG~~~W~~~~~~~~~~~~~i~ssP~v~~~~v~vg~~~~~~~~~~~~g~v~alD~~TG~~~W~~~~~~~~~~~~ 201 (488)
T cd00216 122 LVALDAETGKQVWKFGNNDQVPPGYTMTGAPTIVKKLVIIGSSGAEFFACGVRGALRAYDVETGKLLWRFYTTEPDPNAF 201 (488)
T ss_pred EEEEECCCCCEeeeecCCCCcCcceEecCCCEEECCEEEEeccccccccCCCCcEEEEEECCCCceeeEeeccCCCcCCC
Confidence 5677764 45586532211001111223344556777764321110 0134679999999988889753321111
Q ss_pred CC------------cccccEEEEE-CCcEEEEEccCC------------CCCCCCcEEEEecCCCCcEEEEe
Q 003577 75 PG------------PRYGHVMDLV-SQRYLVSVSGND------------GKRVLSDAWALDTAQKPYVWQRL 121 (810)
Q Consensus 75 P~------------~R~~Hs~~~v-~~~~l~VfGG~~------------g~~~~ndv~~yd~~~~~~~W~~i 121 (810)
|. +....+.++. .++.+|+-.|.. .....+.++.+|.++....|+.-
T Consensus 202 ~~~~~~~~~~~~~g~~vw~~pa~d~~~g~V~vg~~~g~~~~~~~~~~~~~~~~~~~l~Ald~~tG~~~W~~~ 273 (488)
T cd00216 202 PTWGPDRQMWGPGGGTSWASPTYDPKTNLVYVGTGNGSPWNWGGRRTPGDNLYTDSIVALDADTGKVKWFYQ 273 (488)
T ss_pred CCCCCCcceecCCCCCccCCeeEeCCCCEEEEECCCCCCCccCCccCCCCCCceeeEEEEcCCCCCEEEEee
Confidence 10 1111223222 345455543321 01123479999999998899853
No 153
>cd07410 MPP_CpdB_N Escherichia coli CpdB and related proteins, N-terminal metallophosphatase domain. CpdB is a bacterial periplasmic protein with an N-terminal metallophosphatase domain and a C-terminal 3'-nucleotidase domain. This alignment model represents the N-terminal metallophosphatase domain, which has 2',3'-cyclic phosphodiesterase activity, hydrolyzing the 2',3'-cyclic phosphates of adenosine, guanosine, cytosine and uridine to yield nucleoside and phosphate. CpdB also hydrolyzes the chromogenic substrates p-nitrophenyl phosphate (PNPP), bis(PNPP) and p-nitrophenyl phosphorylcholine (NPPC). CpdB is thought to play a scavenging role during RNA hydrolysis by converting the non-transportable nucleotides produced by RNaseI to nucleosides which can easily enter a cell for use as a carbon source. This family also includes YfkN, a Bacillus subtilis nucleotide phosphoesterase with two copies of each of the metallophosphatase and 3'-nucleotidase domains. The N-terminal metallophos
Probab=88.25 E-value=0.78 Score=49.12 Aligned_cols=21 Identities=10% Similarity=0.262 Sum_probs=15.6
Q ss_pred HHHHHHHh-cCCcEEEEecccc
Q 003577 694 RVSDFCKR-NKLQLIIRAHECV 714 (810)
Q Consensus 694 ~~~~fl~~-~~l~~iiR~H~~~ 714 (810)
...+++++ -++++||=||+-+
T Consensus 208 ~~~~la~~~~~vD~IlgGHsH~ 229 (277)
T cd07410 208 AAYELAEEVPGIDAILTGHQHR 229 (277)
T ss_pred HHHHHHhcCCCCcEEEeCCCcc
Confidence 34556666 6899999999864
No 154
>PF06874 FBPase_2: Firmicute fructose-1,6-bisphosphatase; InterPro: IPR009164 Fructose 1,6-bisphosphatase catalyses the hydrolysis of fructose 1,6-bisphosphate to fructose 6-phosphate []. This is an essential reaction in the process of gluconeogenesis, the process by which non-carbohydrate precursors are converted to glucose, and hence this enzyme is found almost universally. Enzyme activity can be regulated by a number of different mechanisms including AMP inhibition, cylic AMP-dependent phosphorylation and light-dependent-activation. This entry represents a group of fructose 1,6-bisphosphatases found within the Firmicutes (low GC Gram-positive bacteria) which do not show any significant sequence similarity to the enzymes from other organisms. The Bacillus subtilis enzyme is inhibited by AMP, though this can be overcome by phosphoenolpyruvate, and is dependent on Mn(2+) [, ]. Mutants lacking this enzyme are apparently still able to grow on gluconeogenic growth substrates such as malate and glycerol.; GO: 0042132 fructose 1,6-bisphosphate 1-phosphatase activity, 0006094 gluconeogenesis
Probab=87.33 E-value=0.53 Score=54.62 Aligned_cols=57 Identities=30% Similarity=0.346 Sum_probs=42.6
Q ss_pred CHHHHHHHHHhcCCc----EEEEeccccc--cceE-EecCCeEEEE---EccCCCCCCCCCeEEEEEE
Q 003577 691 GPDRVSDFCKRNKLQ----LIIRAHECVM--DGFE-RFAQGQLITL---FSATNYCGTANNAGAILVV 748 (810)
Q Consensus 691 g~~~~~~fl~~~~l~----~iiR~H~~~~--~G~~-~~~~~~~itv---fSa~~y~~~~~n~ga~l~~ 748 (810)
.++..++.|+..||+ .||-||.+|. +|=. .-++||++.| ||.. |....+=+|=-|+.
T Consensus 507 ~e~~c~~IL~EFgl~~~~~hIINGHvPVk~k~GEsPIKa~Gkl~VIDGGfskA-Yqk~TGIAGYTLiy 573 (640)
T PF06874_consen 507 DEEICDKILEEFGLDPERGHIINGHVPVKVKKGESPIKANGKLIVIDGGFSKA-YQKTTGIAGYTLIY 573 (640)
T ss_pred CHHHHHHHHHHhCCCCCCCeEECCccccccCCCCCCccCCCEEEEEcChhhhh-hccccCccceEEEe
Confidence 677888999999999 9999999986 5644 4689999999 8765 55444444544443
No 155
>PF08321 PPP5: PPP5 TPR repeat region; InterPro: IPR013235 This domain is specific to the PPP5 subfamily of serine/threonine phosphatases.; GO: 0004722 protein serine/threonine phosphatase activity, 0046872 metal ion binding; PDB: 3ICF_B 3H60_B 3H63_A 3H66_A 3H62_B 1A17_A 1S95_B 3H69_A 3H68_D 3H64_D ....
Probab=86.96 E-value=2.4 Score=37.59 Aligned_cols=43 Identities=16% Similarity=0.240 Sum_probs=32.6
Q ss_pred chhHHHHHHHHHhCCCCCCCCCCcccccCHHHHHHHHHHHHHHHhcCCceEee
Q 003577 452 PQGLHKKIISTLLRPRNWKAPANRRFFLDSYEVGELCYAAEQIFMQEPTVLQL 504 (810)
Q Consensus 452 ~~~~~~~~i~~l~~~~~~~~~~~~~~~~~~~~i~~l~~~~~~~~~~e~~~l~~ 504 (810)
...+.+.+|+.+-+.+ .|+...+..|+.++.++|+++|++++|
T Consensus 53 t~efv~~mie~FK~~K----------~Lhkkyv~~Il~~~~~llk~~PslVeI 95 (95)
T PF08321_consen 53 TLEFVKAMIEWFKNQK----------KLHKKYVYQILLEAKKLLKQLPSLVEI 95 (95)
T ss_dssp -HHHHHHHHHHHHCT--------------HHHHHHHHHHHHHHHHTS-SEEEE
T ss_pred CHHHHHHHHHHHHhCC----------CccHHHHHHHHHHHHHHHHhCcCccCC
Confidence 4567888998876543 478899999999999999999999986
No 156
>COG0420 SbcD DNA repair exonuclease [DNA replication, recombination, and repair]
Probab=86.74 E-value=1.8 Score=48.84 Aligned_cols=46 Identities=26% Similarity=0.296 Sum_probs=34.4
Q ss_pred eEEEeccccCCCCChHHHHHHHHHHhhcCC---CcEEEecCCccccchh
Q 003577 541 DYLFLGDYVDRGQHSLETITLLLALKIEYP---ENVHLIRGNHEAADIN 586 (810)
Q Consensus 541 ~~vfLGDyVDRG~~s~evl~ll~~lk~~~p---~~v~llrGNHE~~~~~ 586 (810)
-+|+-||+.|++.-|.+++.++...-.+.- --||+|.||||.....
T Consensus 43 ~vliAGDlFd~~~Ps~~a~~~~~~~l~~l~~~~Ipv~~I~GNHD~~~~~ 91 (390)
T COG0420 43 FVLIAGDLFDTNNPSPRALKLFLEALRRLKDAGIPVVVIAGNHDSPSRL 91 (390)
T ss_pred EEEEccccccCCCCCHHHHHHHHHHHHHhccCCCcEEEecCCCCchhcc
Confidence 588899999999999888866644322221 2599999999987643
No 157
>PF07893 DUF1668: Protein of unknown function (DUF1668); InterPro: IPR012871 The hypothetical proteins found in this family are expressed by Oryza sativa (Rice) and are of unknown function.
Probab=85.23 E-value=8.8 Score=42.50 Aligned_cols=107 Identities=15% Similarity=0.221 Sum_probs=60.7
Q ss_pred eEEEecCCCcEEEecCCCCCCccccccEEEEECCEEEEECccCCCCCcc----CcEEEE--E------ccCCceEEEEEe
Q 003577 2 MFSLENGPAGVCRIRPAGEPPSPRAAHAAAAVGTMVVFQGGIGPAGHST----DDLYVL--D------LTNDKFKWHRVV 69 (810)
Q Consensus 2 l~~~~~~t~~W~~l~~~g~~P~~R~~haa~~~~~~lyv~GG~~~~~~~~----~dl~~l--D------l~t~~~~W~~v~ 69 (810)
+..||+.+..-... +.++.+...-.++.+++.||++.......... ..+..+ + .....+.|..++
T Consensus 88 t~vyDt~t~av~~~---P~l~~pk~~pisv~VG~~LY~m~~~~~~~~~~~~~~~~FE~l~~~~~~~~~~~~~~w~W~~LP 164 (342)
T PF07893_consen 88 TLVYDTDTRAVATG---PRLHSPKRCPISVSVGDKLYAMDRSPFPEPAGRPDFPCFEALVYRPPPDDPSPEESWSWRSLP 164 (342)
T ss_pred eEEEECCCCeEecc---CCCCCCCcceEEEEeCCeEEEeeccCccccccCccceeEEEeccccccccccCCCcceEEcCC
Confidence 35678777765533 23444445557788899999998875322111 144444 3 122347788876
Q ss_pred ecCCCCCcccc-------cEEEEECCcEEEE-EccCCCCCCCCcEEEEecCCCCcEEEEe
Q 003577 70 VQGQGPGPRYG-------HVMDLVSQRYLVS-VSGNDGKRVLSDAWALDTAQKPYVWQRL 121 (810)
Q Consensus 70 ~~g~~P~~R~~-------Hs~~~v~~~~l~V-fGG~~g~~~~ndv~~yd~~~~~~~W~~i 121 (810)
+ +|-.+.. .+.+++++..|+| .-|.. .-+|.||+++. +|+++
T Consensus 165 ~---PPf~~~~~~~~~~i~sYavv~g~~I~vS~~~~~-----~GTysfDt~~~--~W~~~ 214 (342)
T PF07893_consen 165 P---PPFVRDRRYSDYRITSYAVVDGRTIFVSVNGRR-----WGTYSFDTESH--EWRKH 214 (342)
T ss_pred C---CCccccCCcccceEEEEEEecCCeEEEEecCCc-----eEEEEEEcCCc--ceeec
Confidence 5 3433322 2333444555665 22221 23899999888 99987
No 158
>KOG3662 consensus Cell division control protein/predicted DNA repair exonuclease [Replication, recombination and repair]
Probab=84.23 E-value=2 Score=47.87 Aligned_cols=42 Identities=33% Similarity=0.426 Sum_probs=31.7
Q ss_pred eEEEeccccCCCCC--hHHHHHHHHHHhhcCCC----cEEEecCCccc
Q 003577 541 DYLFLGDYVDRGQH--SLETITLLLALKIEYPE----NVHLIRGNHEA 582 (810)
Q Consensus 541 ~~vfLGDyVDRG~~--s~evl~ll~~lk~~~p~----~v~llrGNHE~ 582 (810)
-++||||++|-|.. .-|--.....+|..|+. .+..+.||||-
T Consensus 96 vvffLGDLfDeG~~~~~eEf~~~~~RfkkIf~~k~~~~~~~i~GNhDI 143 (410)
T KOG3662|consen 96 VVFFLGDLFDEGQWAGDEEFKKRYERFKKIFGRKGNIKVIYIAGNHDI 143 (410)
T ss_pred EEEEeccccccCccCChHHHHHHHHHHHHhhCCCCCCeeEEeCCcccc
Confidence 57889999998874 34555666666666664 68889999996
No 159
>PF12768 Rax2: Cortical protein marker for cell polarity
Probab=83.74 E-value=27 Score=37.47 Aligned_cols=106 Identities=9% Similarity=0.100 Sum_probs=64.8
Q ss_pred EEecCCCcEEEecCCCCCCccccc--cEEEEE-CCEEEEECccCCCCCccCcEEEEEccCCceEEEEEeec--CCCCCcc
Q 003577 4 SLENGPAGVCRIRPAGEPPSPRAA--HAAAAV-GTMVVFQGGIGPAGHSTDDLYVLDLTNDKFKWHRVVVQ--GQGPGPR 78 (810)
Q Consensus 4 ~~~~~t~~W~~l~~~g~~P~~R~~--haa~~~-~~~lyv~GG~~~~~~~~~dl~~lDl~t~~~~W~~v~~~--g~~P~~R 78 (810)
.||+.+.+|.++... -.| ++...+ ++.||+.|-..-.+.....+-.||.++ .+|..+... ...|+|.
T Consensus 20 ~yd~~~~qW~~~g~~------i~G~V~~l~~~~~~~Llv~G~ft~~~~~~~~la~yd~~~--~~w~~~~~~~s~~ipgpv 91 (281)
T PF12768_consen 20 LYDTDNSQWSSPGNG------ISGTVTDLQWASNNQLLVGGNFTLNGTNSSNLATYDFKN--QTWSSLGGGSSNSIPGPV 91 (281)
T ss_pred EEECCCCEeecCCCC------ceEEEEEEEEecCCEEEEEEeeEECCCCceeEEEEecCC--CeeeecCCcccccCCCcE
Confidence 578899999887532 222 222223 678888887654443455688999988 559887762 3567775
Q ss_pred cccEEEEECCcEEEEEccCCCCCCCCcEEEEecCCCCcEEEEecC
Q 003577 79 YGHVMDLVSQRYLVSVSGNDGKRVLSDAWALDTAQKPYVWQRLNP 123 (810)
Q Consensus 79 ~~Hs~~~v~~~~l~VfGG~~g~~~~ndv~~yd~~~~~~~W~~i~~ 123 (810)
..-+....+...+++.|.... -..-+..| +.. +|+.+..
T Consensus 92 ~a~~~~~~d~~~~~~aG~~~~--g~~~l~~~--dGs--~W~~i~~ 130 (281)
T PF12768_consen 92 TALTFISNDGSNFWVAGRSAN--GSTFLMKY--DGS--SWSSIGS 130 (281)
T ss_pred EEEEeeccCCceEEEeceecC--CCceEEEE--cCC--ceEeccc
Confidence 333333335555777776521 12235555 446 8998855
No 160
>cd07412 MPP_YhcR_N Bacillus subtilis YhcR endonuclease and related proteins, N-terminal metallophosphatase domain. YhcR is a Bacillus subtilis sugar-nonspecific endonuclease. It cleaves endonucleolytically to yield nucleotide 3'-monophosphate products, similar to Staphylococcus aureus micrococcal nuclease. YhcR appears to be located in the cell wall, and is thought to be a substrate for a Bacillus subtilis sortase. YhcR is the major calcium-activated nuclease of B. subtilis. The N-terminal metallophosphatase domain belongs to a large superfamily of distantly related metallophosphatases (MPPs) that includes: Mre11/SbcD-like exonucleases, Dbr1-like RNA lariat debranching enzymes, YfcE-like phosphodiesterases, purple acid phosphatases (PAPs), YbbF-like UDP-2,3-diacylglucosamine hydrolases, and acid sphingomyelinases (ASMases). MPPs are functionally diverse, but all share a conserved domain with an active site consisting of two metal ions (usually manganese, iron, or zinc) coordinated wi
Probab=83.20 E-value=1.6 Score=47.20 Aligned_cols=66 Identities=26% Similarity=0.325 Sum_probs=40.4
Q ss_pred CeEEEecCCCCHHH--------------HHHHHHHhCCCCCCCCcceeeEEEeccccCCCCC-h-----HHHHHHHHHHh
Q 003577 507 PVKVFGDLHGQFGD--------------LMRLFDEYGFPSTAGDITYIDYLFLGDYVDRGQH-S-----LETITLLLALK 566 (810)
Q Consensus 507 pi~vvGDiHG~~~~--------------L~~~l~~~~~~~~~~~~~~~~~vfLGDyVDRG~~-s-----~evl~ll~~lk 566 (810)
.|+.+.|+||++.. |..+++........ .-+|..||+++..+. + ..++.++-++.
T Consensus 2 ~il~tnD~Hg~~~~~~~~~~~~~gG~arl~~~i~~~r~~~~~-----~l~ld~GD~~~gs~~~s~~~~g~~~~~~~n~~g 76 (288)
T cd07412 2 QILAINDFHGRLEPPGKVVTVPAGGAAYLAAYLDEARAQNPN-----SLFVSAGDLIGASPFESALLQDEPTIEALNAMG 76 (288)
T ss_pred eEEEEeccccCccCCCCccccccccHHHHHHHHHHHHhcCCC-----eEEEeCCcccccccchhhcccCCcHHHHHHhhC
Confidence 37789999998653 55556554322111 146669999987654 2 24555555553
Q ss_pred hcCCCcEEEecCCccc
Q 003577 567 IEYPENVHLIRGNHEA 582 (810)
Q Consensus 567 ~~~p~~v~llrGNHE~ 582 (810)
. =.+..||||.
T Consensus 77 ~-----Da~t~GNHef 87 (288)
T cd07412 77 V-----DASAVGNHEF 87 (288)
T ss_pred C-----eeeeeccccc
Confidence 2 2455699996
No 161
>COG1520 FOG: WD40-like repeat [Function unknown]
Probab=83.17 E-value=82 Score=35.05 Aligned_cols=158 Identities=19% Similarity=0.278 Sum_probs=85.2
Q ss_pred EEEECCEEEEECccCCCCCccCcEEEEEccCCceEEEEEeecCCCCCcccccEEEEECCcEEEEEccCCCCCCCCcEEEE
Q 003577 30 AAAVGTMVVFQGGIGPAGHSTDDLYVLDLTNDKFKWHRVVVQGQGPGPRYGHVMDLVSQRYLVSVSGNDGKRVLSDAWAL 109 (810)
Q Consensus 30 a~~~~~~lyv~GG~~~~~~~~~dl~~lDl~t~~~~W~~v~~~g~~P~~R~~Hs~~~v~~~~l~VfGG~~g~~~~ndv~~y 109 (810)
.+..+++||+.- ....++.+|..+....|+..... ..-...+-..+.++.+| +|..++ .+++|
T Consensus 64 ~~~~dg~v~~~~-------~~G~i~A~d~~~g~~~W~~~~~~----~~~~~~~~~~~~~G~i~-~g~~~g-----~~y~l 126 (370)
T COG1520 64 PADGDGTVYVGT-------RDGNIFALNPDTGLVKWSYPLLG----AVAQLSGPILGSDGKIY-VGSWDG-----KLYAL 126 (370)
T ss_pred cEeeCCeEEEec-------CCCcEEEEeCCCCcEEecccCcC----cceeccCceEEeCCeEE-Eecccc-----eEEEE
Confidence 356678888871 12289999999876679764431 01112222223344455 555555 69999
Q ss_pred ecCCCCcEEEEecCCCCCCCcccceEEEEeCCcEEEEEcccCCCCCccccEEEEEeCCCC--eEEEEeCCCCCCCcccce
Q 003577 110 DTAQKPYVWQRLNPEGDRPSARMYATASARSDGMFLLCGGRDASGAPLADAYGLLMHRNG--QWEWTLAPGVAPSPRYQH 187 (810)
Q Consensus 110 d~~~~~~~W~~i~~~g~~P~~R~~hsa~~~~~~~l~v~GG~~~~g~~l~d~~~l~~~~~~--~W~~~~~~g~~P~~R~~h 187 (810)
|..+....|+.-... . ++ .....+..++.+|+.- + -..++.++.. ++ .|+.....+ ...+...
T Consensus 127 d~~~G~~~W~~~~~~---~-~~-~~~~~v~~~~~v~~~s--~-----~g~~~al~~~-tG~~~W~~~~~~~--~~~~~~~ 191 (370)
T COG1520 127 DASTGTLVWSRNVGG---S-PY-YASPPVVGDGTVYVGT--D-----DGHLYALNAD-TGTLKWTYETPAP--LSLSIYG 191 (370)
T ss_pred ECCCCcEEEEEecCC---C-eE-EecCcEEcCcEEEEec--C-----CCeEEEEEcc-CCcEEEEEecCCc--ccccccc
Confidence 998888899876543 1 33 2344456666555432 1 1234555544 34 455434332 1222222
Q ss_pred EEEEECCEEEEEcccCCCCCCCCCCceEEEEECCCC--cEEE
Q 003577 188 AAVFVGARLHVTGGALRGGRAIEGEAAVAVLDTAAG--VWLD 227 (810)
Q Consensus 188 sav~~~~~l~V~GG~~~~~~~~~~~~~l~~yD~~t~--~W~~ 227 (810)
......+.+|+-.-. . ...++.+|.+++ .|..
T Consensus 192 ~~~~~~~~vy~~~~~-~-------~~~~~a~~~~~G~~~w~~ 225 (370)
T COG1520 192 SPAIASGTVYVGSDG-Y-------DGILYALNAEDGTLKWSQ 225 (370)
T ss_pred CceeecceEEEecCC-C-------cceEEEEEccCCcEeeee
Confidence 223445555554221 1 114889998766 4875
No 162
>cd07378 MPP_ACP5 Homo sapiens acid phosphatase 5 and related proteins, metallophosphatase domain. Acid phosphatase 5 (ACP5) removes the mannose 6-phosphate recognition marker from lysosomal proteins. The exact site of dephosphorylation is not clear. Evidence suggests dephosphorylation may take place in a prelysosomal compartment as well as in the lysosome. ACP5 belongs to the metallophosphatase (MPP) superfamily. MPPs are functionally diverse, but all share a conserved domain with an active site consisting of two metal ions (usually manganese, iron, or zinc) coordinated with octahedral geometry by a cage of histidine, aspartate, and asparagine residues. The MPP superfamily includes: Mre11/SbcD-like exonucleases, Dbr1-like RNA lariat debranching enzymes, YfcE-like phosphodiesterases, purple acid phosphatases (PAPs), YbbF-like UDP-2,3-diacylglucosamine hydrolases, and acid sphingomyelinases (ASMases). The conserved domain is a double beta-sheet sandwich with a di-metal active site ma
Probab=82.36 E-value=2.7 Score=44.74 Aligned_cols=23 Identities=22% Similarity=0.348 Sum_probs=19.5
Q ss_pred HHHHHHHHHhcCCcEEEEecccc
Q 003577 692 PDRVSDFCKRNKLQLIIRAHECV 714 (810)
Q Consensus 692 ~~~~~~fl~~~~l~~iiR~H~~~ 714 (810)
...+.+++++.++++++-||.-.
T Consensus 190 ~~~l~~l~~~~~v~~vl~GH~H~ 212 (277)
T cd07378 190 VDRLLPLLKKYKVDAYLSGHDHN 212 (277)
T ss_pred HHHHHHHHHHcCCCEEEeCCccc
Confidence 45678899999999999999765
No 163
>cd07408 MPP_SA0022_N Staphylococcus aureus SA0022 and related proteins, N-terminal metallophosphatase domain. SA0022 is an uncharacterized Staphylococcus aureus UshA-like protein with two putative domains, an N-terminal metallophosphatase domain and a C-terminal nucleotidase domain. SA0022 also contains a putative C-terminal cell wall anchor domain. The N-terminal metallophosphatase domain belongs to a large superfamily of distantly related metallophosphatases (MPPs) that includes: Mre11/SbcD-like exonucleases, Dbr1-like RNA lariat debranching enzymes, YfcE-like phosphodiesterases, purple acid phosphatases (PAPs), YbbF-like UDP-2,3-diacylglucosamine hydrolases, and acid sphingomyelinases (ASMases). MPPs are functionally diverse, but all share a conserved domain with an active site consisting of two metal ions (usually manganese, iron, or zinc) coordinated with octahedral geometry by a cage of histidine, aspartate, and asparagine residues. The conserved domain is a double beta-sheet
Probab=81.27 E-value=3 Score=44.17 Aligned_cols=65 Identities=22% Similarity=0.181 Sum_probs=37.8
Q ss_pred CeEEEecCCCCHH----------HHHHHHHHhCCCCCCCCcceeeEEEeccccCCCCCh-----HHHHHHHHHHhhcCCC
Q 003577 507 PVKVFGDLHGQFG----------DLMRLFDEYGFPSTAGDITYIDYLFLGDYVDRGQHS-----LETITLLLALKIEYPE 571 (810)
Q Consensus 507 pi~vvGDiHG~~~----------~L~~~l~~~~~~~~~~~~~~~~~vfLGDyVDRG~~s-----~evl~ll~~lk~~~p~ 571 (810)
.|+.+.|+||++. .|..+++...-.+. .-+|..||+++..+.+ ..++..|-++.
T Consensus 2 ~il~~~D~H~~~~~~~~~~~g~~~l~~~i~~~~~~~~------~l~l~~GD~~~gs~~~~~~~g~~~~~~ln~~g----- 70 (257)
T cd07408 2 TILHTNDIHGRIDEDDNNGIGYAKLATYKKEMNKLDN------DLLVDAGDAIQGLPISDLDKGETIIKIMNAVG----- 70 (257)
T ss_pred EEEEeccCcccccCCCCccccHHHHHHHHHHHHhcCC------EEEEeCCCcCCCchhhhhcCCcHHHHHHHhcC-----
Confidence 3678899999854 45555555432211 1466699999876543 22333333332
Q ss_pred cEEEecCCccc
Q 003577 572 NVHLIRGNHEA 582 (810)
Q Consensus 572 ~v~llrGNHE~ 582 (810)
--.+..||||.
T Consensus 71 ~d~~~~GNHef 81 (257)
T cd07408 71 YDAVTPGNHEF 81 (257)
T ss_pred CcEEccccccc
Confidence 22345699996
No 164
>PRK13684 Ycf48-like protein; Provisional
Probab=79.45 E-value=1e+02 Score=33.86 Aligned_cols=182 Identities=14% Similarity=0.236 Sum_probs=83.3
Q ss_pred eEEEecCCCcEEEecCCCCCCccccccEEEEEC-CEEEEECccCCCCCccCcEEEEEccCCceEEEEEeecCCCCCcccc
Q 003577 2 MFSLENGPAGVCRIRPAGEPPSPRAAHAAAAVG-TMVVFQGGIGPAGHSTDDLYVLDLTNDKFKWHRVVVQGQGPGPRYG 80 (810)
Q Consensus 2 l~~~~~~t~~W~~l~~~g~~P~~R~~haa~~~~-~~lyv~GG~~~~~~~~~dl~~lDl~t~~~~W~~v~~~g~~P~~R~~ 80 (810)
+|.-.....+|+++......|... .....++ +.+++.|.. ..+|+-+= .-.+|.++.. +..-.-
T Consensus 111 i~~S~DgG~tW~~~~~~~~~~~~~--~~i~~~~~~~~~~~g~~-------G~i~~S~D--gG~tW~~~~~----~~~g~~ 175 (334)
T PRK13684 111 LLHTTDGGKNWTRIPLSEKLPGSP--YLITALGPGTAEMATNV-------GAIYRTTD--GGKNWEALVE----DAAGVV 175 (334)
T ss_pred EEEECCCCCCCeEccCCcCCCCCc--eEEEEECCCcceeeecc-------ceEEEECC--CCCCceeCcC----CCcceE
Confidence 344444567899885321222211 1223333 345555443 22333222 2246988763 222234
Q ss_pred cEEEEECCcEEEEEccCCCCCCCCcEEEE-ecCCCCcEEEEecCCCCCCCcccceEEEEeCCcEEEEEcccCCCCCcccc
Q 003577 81 HVMDLVSQRYLVSVSGNDGKRVLSDAWAL-DTAQKPYVWQRLNPEGDRPSARMYATASARSDGMFLLCGGRDASGAPLAD 159 (810)
Q Consensus 81 Hs~~~v~~~~l~VfGG~~g~~~~ndv~~y-d~~~~~~~W~~i~~~g~~P~~R~~hsa~~~~~~~l~v~GG~~~~g~~l~d 159 (810)
+.+....++.+++.| ..+ .++.- |-... +|+.+.. +..+.-+++....++.+++.|... .
T Consensus 176 ~~i~~~~~g~~v~~g-~~G-----~i~~s~~~gg~--tW~~~~~----~~~~~l~~i~~~~~g~~~~vg~~G---~---- 236 (334)
T PRK13684 176 RNLRRSPDGKYVAVS-SRG-----NFYSTWEPGQT--AWTPHQR----NSSRRLQSMGFQPDGNLWMLARGG---Q---- 236 (334)
T ss_pred EEEEECCCCeEEEEe-CCc-----eEEEEcCCCCC--eEEEeeC----CCcccceeeeEcCCCCEEEEecCC---E----
Confidence 445445555444443 333 13322 33334 7988743 233445555555666677776321 1
Q ss_pred EEEEE-eCCCCeEEEEeCCCCCCCcccc-eEEEEE-CCEEEEEcccCCCCCCCCCCceEEEEECCCCcEEEccc
Q 003577 160 AYGLL-MHRNGQWEWTLAPGVAPSPRYQ-HAAVFV-GARLHVTGGALRGGRAIEGEAAVAVLDTAAGVWLDRNG 230 (810)
Q Consensus 160 ~~~l~-~~~~~~W~~~~~~g~~P~~R~~-hsav~~-~~~l~V~GG~~~~~~~~~~~~~l~~yD~~t~~W~~v~~ 230 (810)
..+. ...-.+|+.+..+.. ...+. +++++. .+.+++.|.... ++.-.-...+|+.+..
T Consensus 237 -~~~~s~d~G~sW~~~~~~~~--~~~~~l~~v~~~~~~~~~~~G~~G~----------v~~S~d~G~tW~~~~~ 297 (334)
T PRK13684 237 -IRFNDPDDLESWSKPIIPEI--TNGYGYLDLAYRTPGEIWAGGGNGT----------LLVSKDGGKTWEKDPV 297 (334)
T ss_pred -EEEccCCCCCccccccCCcc--ccccceeeEEEcCCCCEEEEcCCCe----------EEEeCCCCCCCeECCc
Confidence 1121 122236776543211 11122 233333 557888775411 3333334568998764
No 165
>PF08268 FBA_3: F-box associated domain; InterPro: IPR013187 This domain occurs in a diverse superfamily of genes in plants. Most examples are found C-terminal to an F-box (IPR001810 from INTERPRO), a 60 amino acid motif involved in ubiquitination of target proteins to mark them for degradation. Two-hybid experiments support the idea that most members are interchangeable F-box subunits of SCF E3 complexes []. Some members have two copies of this domain.
Probab=78.91 E-value=19 Score=33.53 Aligned_cols=85 Identities=13% Similarity=0.222 Sum_probs=52.5
Q ss_pred EEECCEEEEECccCCCCCccCcEEEEEccCCceEEEEEeecCCCCCcccccEEEEECCcEEEEEccCCCC-CCCCcEEEE
Q 003577 31 AAVGTMVVFQGGIGPAGHSTDDLYVLDLTNDKFKWHRVVVQGQGPGPRYGHVMDLVSQRYLVSVSGNDGK-RVLSDAWAL 109 (810)
Q Consensus 31 ~~~~~~lyv~GG~~~~~~~~~dl~~lDl~t~~~~W~~v~~~g~~P~~R~~Hs~~~v~~~~l~VfGG~~g~-~~~ndv~~y 109 (810)
+++++.+|...-. .....+-+..||+.+++ |+.+..............++.++++ |.++.-.... ...-++|++
T Consensus 2 icinGvly~~a~~--~~~~~~~IvsFDv~~E~--f~~i~~P~~~~~~~~~~~L~~~~G~-L~~v~~~~~~~~~~~~iWvL 76 (129)
T PF08268_consen 2 ICINGVLYWLAWS--EDSDNNVIVSFDVRSEK--FRFIKLPEDPYSSDCSSTLIEYKGK-LALVSYNDQGEPDSIDIWVL 76 (129)
T ss_pred EEECcEEEeEEEE--CCCCCcEEEEEEcCCce--EEEEEeeeeeccccCccEEEEeCCe-EEEEEecCCCCcceEEEEEe
Confidence 4678888887766 23355778999999965 7776642122344555566666655 5444333322 234589998
Q ss_pred e-cCCCCcEEEEec
Q 003577 110 D-TAQKPYVWQRLN 122 (810)
Q Consensus 110 d-~~~~~~~W~~i~ 122 (810)
+ ..+. +|++..
T Consensus 77 eD~~k~--~Wsk~~ 88 (129)
T PF08268_consen 77 EDYEKQ--EWSKKH 88 (129)
T ss_pred eccccc--eEEEEE
Confidence 4 5566 898763
No 166
>PF12768 Rax2: Cortical protein marker for cell polarity
Probab=78.53 E-value=20 Score=38.41 Aligned_cols=126 Identities=17% Similarity=0.200 Sum_probs=69.3
Q ss_pred EEEECccCCCC-CccCcEEEEEccCCceEEEEEeecCCCCCcccccEEEEECCcEEEEEccCCCCC-CCCcEEEEecCCC
Q 003577 37 VVFQGGIGPAG-HSTDDLYVLDLTNDKFKWHRVVVQGQGPGPRYGHVMDLVSQRYLVSVSGNDGKR-VLSDAWALDTAQK 114 (810)
Q Consensus 37 lyv~GG~~~~~-~~~~dl~~lDl~t~~~~W~~v~~~g~~P~~R~~Hs~~~v~~~~l~VfGG~~g~~-~~ndv~~yd~~~~ 114 (810)
|||.|-+...+ .....+-.||..+ .+|..+-.. .-+ .=+++..+++..+|+.|-.+-.. ....+-.||.++.
T Consensus 1 v~VGG~F~~aGsL~C~~lC~yd~~~--~qW~~~g~~--i~G--~V~~l~~~~~~~Llv~G~ft~~~~~~~~la~yd~~~~ 74 (281)
T PF12768_consen 1 VYVGGSFTSAGSLPCPGLCLYDTDN--SQWSSPGNG--ISG--TVTDLQWASNNQLLVGGNFTLNGTNSSNLATYDFKNQ 74 (281)
T ss_pred CEEeeecCCCCCcCCCEEEEEECCC--CEeecCCCC--ceE--EEEEEEEecCCEEEEEEeeEECCCCceeEEEEecCCC
Confidence 45655555443 2567788999988 569875431 111 12333345566688776543222 3445778999888
Q ss_pred CcEEEEecCC--CCCCCcccceEEEEeCCcEEEEEcccCCCCCccccEEEEEeCCCCeEEEEeC
Q 003577 115 PYVWQRLNPE--GDRPSARMYATASARSDGMFLLCGGRDASGAPLADAYGLLMHRNGQWEWTLA 176 (810)
Q Consensus 115 ~~~W~~i~~~--g~~P~~R~~hsa~~~~~~~l~v~GG~~~~g~~l~d~~~l~~~~~~~W~~~~~ 176 (810)
+|+.+... ..+|.|-..-.........+++.|.. ..+ +.+...- +..+|..+..
T Consensus 75 --~w~~~~~~~s~~ipgpv~a~~~~~~d~~~~~~aG~~-~~g----~~~l~~~-dGs~W~~i~~ 130 (281)
T PF12768_consen 75 --TWSSLGGGSSNSIPGPVTALTFISNDGSNFWVAGRS-ANG----STFLMKY-DGSSWSSIGS 130 (281)
T ss_pred --eeeecCCcccccCCCcEEEEEeeccCCceEEEecee-cCC----CceEEEE-cCCceEeccc
Confidence 99888652 45666643222222233457776655 322 2222222 2337776655
No 167
>cd07411 MPP_SoxB_N Thermus thermophilus SoxB and related proteins, N-terminal metallophosphatase domain. SoxB (sulfur oxidation protein B) is a periplasmic thiosulfohydrolase and an essential component of the sulfur oxidation pathway in archaea and bacteria. SoxB has a dinuclear manganese cluster and is thought to catalyze the release of sulfate from a protein-bound cysteine S-thiosulfonate. SoxB is expressed from the sox (sulfur oxidation) gene cluster, which encodes 15 other sox genes, and has two domains, an N-terminal metallophosphatase domain and a C-terminal 5'-nucleotidase domain. SoxB binds the SoxYZ complex and is thought to function as a sulfate-thiohydrolase. SoxB is closely related to the UshA, YchR, and CpdB proteins, all of which have the same two-domain architecture. The N-terminal metallophosphatase domain belongs to a large superfamily of distantly related metallophosphatases (MPPs) that includes: Mre11/SbcD-like exonucleases, Dbr1-like RNA lariat debranching enzy
Probab=78.48 E-value=4.3 Score=43.11 Aligned_cols=35 Identities=26% Similarity=0.212 Sum_probs=20.7
Q ss_pred EEEeccccCCCCChH-----HHHHHHHHHhhcCCCcEEEecCCccc
Q 003577 542 YLFLGDYVDRGQHSL-----ETITLLLALKIEYPENVHLIRGNHEA 582 (810)
Q Consensus 542 ~vfLGDyVDRG~~s~-----evl~ll~~lk~~~p~~v~llrGNHE~ 582 (810)
+|..||+++..+.+. .++.++-++ + --.+. ||||.
T Consensus 55 ~l~~GD~~~gs~~~~~~~g~~~~~~l~~~----g-~da~~-GNHef 94 (264)
T cd07411 55 LLDGGDTWQGSGEALYTRGQAMVDALNAL----G-VDAMV-GHWEF 94 (264)
T ss_pred EEeCCCccCCChHHhhcCChhHHHHHHhh----C-CeEEe-ccccc
Confidence 455899998776432 334444443 2 23444 99996
No 168
>cd07387 MPP_PolD2_C PolD2 (DNA polymerase delta, subunit 2), C-terminal domain. PolD2 (DNA polymerase delta, subunit 2) is an auxiliary subunit of the eukaryotic DNA polymerase delta (PolD) complex thought to play a regulatory role and to serve as a scaffold for PolD assembly by interacting simultaneously with all of the other three subunits. PolD2 is catalytically inactive and lacks the active site residues required for phosphoesterase activity in other members of this superfamily. PolD2 is also involved in the recruitment of several proteins regulating DNA metabolism, including p21, PDIP1, PDIP38, PDIP46, and WRN. Human PolD consists of four subunits: p125 (PolD1), p50 (PolD2), p66(PolD3), and p12(PolD4). PolD is one of three major replicases in eukaryotes. PolD also plays an essential role in translesion DNA synthesis, homologous recombination, and DNA repair. Within the PolD complex, PolD2 tightly associates with PolD3. PolD2 belongs to the metallophosphatase (MPP) superfamily
Probab=76.24 E-value=1.1e+02 Score=32.41 Aligned_cols=48 Identities=19% Similarity=0.274 Sum_probs=27.9
Q ss_pred cEEEEeccccccceEEec--CCeEEEEEccCCCCCCCCCeEEEEEE-cCcceEEEE
Q 003577 705 QLIIRAHECVMDGFERFA--QGQLITLFSATNYCGTANNAGAILVV-GRGLVVVPK 757 (810)
Q Consensus 705 ~~iiR~H~~~~~G~~~~~--~~~~itvfSa~~y~~~~~n~ga~l~~-~~~~~~~~~ 757 (810)
..++-|||.. -|.+.+. +++-+.+.|.|.|.. .|.++.+ =+++++.+.
T Consensus 205 hVyf~Gnq~~-f~t~~~~~~~~~~v~lv~vP~Fs~----t~~~vlvdl~tLe~~~v 255 (257)
T cd07387 205 HVYFAGNQPK-FGTKLVEGEEGQRVLLVCVPSFSK----TGTAVLVNLRTLECEPI 255 (257)
T ss_pred CEEEeCCCcc-eeeeEEEcCCCCeEEEEEeCCcCc----CCEEEEEECCcCcEEEE
Confidence 3456678765 3444433 366778888898854 3444444 345666543
No 169
>KOG2055 consensus WD40 repeat protein [General function prediction only]
Probab=74.34 E-value=68 Score=36.19 Aligned_cols=107 Identities=18% Similarity=0.257 Sum_probs=57.2
Q ss_pred CCEEEEECccCCCCCccCcEEEEEccCCceEEEEEeecCCCCCcccccEEEEECCcEEEEEccCCCCCCCCcEEEEecCC
Q 003577 34 GTMVVFQGGIGPAGHSTDDLYVLDLTNDKFKWHRVVVQGQGPGPRYGHVMDLVSQRYLVSVSGNDGKRVLSDAWALDTAQ 113 (810)
Q Consensus 34 ~~~lyv~GG~~~~~~~~~dl~~lDl~t~~~~W~~v~~~g~~P~~R~~Hs~~~v~~~~l~VfGG~~g~~~~ndv~~yd~~~ 113 (810)
|..+++++|.. .-+|.||+.+ .+-.++.+....+ .+.-+...+-....++++-|..|. +..+...+
T Consensus 269 G~~~i~~s~rr------ky~ysyDle~--ak~~k~~~~~g~e-~~~~e~FeVShd~~fia~~G~~G~-----I~lLhakT 334 (514)
T KOG2055|consen 269 GHSVIFTSGRR------KYLYSYDLET--AKVTKLKPPYGVE-EKSMERFEVSHDSNFIAIAGNNGH-----IHLLHAKT 334 (514)
T ss_pred CceEEEecccc------eEEEEeeccc--cccccccCCCCcc-cchhheeEecCCCCeEEEcccCce-----EEeehhhh
Confidence 34488888863 5689999998 4466665543333 233333333223336666666553 45566655
Q ss_pred CCcEEEE-ecCCCCCCCcccceEEEEeCCcEEEEEcccCCCCCccccEEEEEeCCC
Q 003577 114 KPYVWQR-LNPEGDRPSARMYATASARSDGMFLLCGGRDASGAPLADAYGLLMHRN 168 (810)
Q Consensus 114 ~~~~W~~-i~~~g~~P~~R~~hsa~~~~~~~l~v~GG~~~~g~~l~d~~~l~~~~~ 168 (810)
+ .|-- +. ++. +....+.....+.+++.||.+ .+|.++....
T Consensus 335 ~--eli~s~K----ieG-~v~~~~fsSdsk~l~~~~~~G-------eV~v~nl~~~ 376 (514)
T KOG2055|consen 335 K--ELITSFK----IEG-VVSDFTFSSDSKELLASGGTG-------EVYVWNLRQN 376 (514)
T ss_pred h--hhhheee----ecc-EEeeEEEecCCcEEEEEcCCc-------eEEEEecCCc
Confidence 5 6521 11 221 222222223346788888764 4677776543
No 170
>TIGR03075 PQQ_enz_alc_DH PQQ-dependent dehydrogenase, methanol/ethanol family. This protein family has a phylogenetic distribution very similar to that coenzyme PQQ biosynthesis enzymes, as shown by partial phylogenetic profiling. Genes in this family often are found adjacent to the PQQ biosynthesis genes themselves. An unusual, strained disulfide bond between adjacent Cys residues contributes to PQQ-binding, as does a Trp residue that is part of a PQQ enzyme repeat (see pfam01011). Characterized members include the dehydrogenase subunit of a membrane-anchored, three subunit alcohol (ethanol) dehydrogenase of Gluconobacter suboxydans, a homodimeric ethanol dehydrogenase in Pseudomonas aeruginosa, and the large subunit of an alpha2/beta2 heterotetrameric methanol dehydrogenase in Methylobacterium extorquens.
Probab=71.05 E-value=2.2e+02 Score=33.56 Aligned_cols=78 Identities=18% Similarity=0.174 Sum_probs=46.5
Q ss_pred EEEECCEEEEECccCCCCCccCcEEEEEccCCceEEEEEeecC--CCC---CcccccEEEEECCcEEEEEccCCCCCCCC
Q 003577 30 AAAVGTMVVFQGGIGPAGHSTDDLYVLDLTNDKFKWHRVVVQG--QGP---GPRYGHVMDLVSQRYLVSVSGNDGKRVLS 104 (810)
Q Consensus 30 a~~~~~~lyv~GG~~~~~~~~~dl~~lDl~t~~~~W~~v~~~g--~~P---~~R~~Hs~~~v~~~~l~VfGG~~g~~~~n 104 (810)
-+++++.||+.... +.++.+|..+.+..|+.-.... ..+ ........++.+ ..+|+ |..+ .
T Consensus 65 Pvv~~g~vyv~s~~-------g~v~AlDa~TGk~lW~~~~~~~~~~~~~~~~~~~~rg~av~~-~~v~v-~t~d-----g 130 (527)
T TIGR03075 65 PLVVDGVMYVTTSY-------SRVYALDAKTGKELWKYDPKLPDDVIPVMCCDVVNRGVALYD-GKVFF-GTLD-----A 130 (527)
T ss_pred CEEECCEEEEECCC-------CcEEEEECCCCceeeEecCCCCcccccccccccccccceEEC-CEEEE-EcCC-----C
Confidence 44568888885442 4699999999888898643211 001 001112223333 44654 3332 3
Q ss_pred cEEEEecCCCCcEEEEe
Q 003577 105 DAWALDTAQKPYVWQRL 121 (810)
Q Consensus 105 dv~~yd~~~~~~~W~~i 121 (810)
.+++||.++....|+.-
T Consensus 131 ~l~ALDa~TGk~~W~~~ 147 (527)
T TIGR03075 131 RLVALDAKTGKVVWSKK 147 (527)
T ss_pred EEEEEECCCCCEEeecc
Confidence 58999999998889764
No 171
>COG3855 Fbp Uncharacterized protein conserved in bacteria [Carbohydrate transport and metabolism]
Probab=70.20 E-value=4.9 Score=44.78 Aligned_cols=40 Identities=25% Similarity=0.402 Sum_probs=34.1
Q ss_pred eEEEeccccCCCCChHHHHHHHHHHhhcCCCcEEEecCCccccch
Q 003577 541 DYLFLGDYVDRGQHSLETITLLLALKIEYPENVHLIRGNHEAADI 585 (810)
Q Consensus 541 ~~vfLGDyVDRG~~s~evl~ll~~lk~~~p~~v~llrGNHE~~~~ 585 (810)
.+-.+||+-||||++-.++.-|..+. .+-+-.||||...+
T Consensus 193 hLHiVGDIyDRGP~pd~Imd~L~~yh-----svDiQWGNHDilWm 232 (648)
T COG3855 193 HLHIVGDIYDRGPYPDKIMDTLINYH-----SVDIQWGNHDILWM 232 (648)
T ss_pred heeeecccccCCCCchHHHHHHhhcc-----cccccccCcceEEe
Confidence 57789999999999999999987752 78888999997654
No 172
>cd00842 MPP_ASMase acid sphingomyelinase and related proteins, metallophosphatase domain. Acid sphingomyelinase (ASMase) is a ubiquitously expressed phosphodiesterase which hydrolyzes sphingomyelin in acid pH conditions to form ceramide, a bioactive second messenger, as part of the sphingomyelin signaling pathway. ASMase is localized at the noncytosolic leaflet of biomembranes (for example the luminal leaflet of endosomes, lysosomes and phagosomes, and the extracellular leaflet of plasma membranes). ASMase-deficient humans develop Niemann-Pick disease. This disease is characterized by lysosomal storage of sphingomyelin in all tissues. Although ASMase-deficient mice are resistant to stress-induced apoptosis, they have greater susceptibility to bacterial infection. The latter correlates with defective phagolysosomal fusion and antibacterial killing activity in ASMase-deficient macrophages. ASMase belongs to the metallophosphatase (MPP) superfamily. MPPs are functionally diverse, but
Probab=69.36 E-value=12 Score=40.22 Aligned_cols=45 Identities=29% Similarity=0.377 Sum_probs=29.2
Q ss_pred eEEEeccccCCCCChH--H------HHHHHHHHhhcCCC-cEEEecCCccccch
Q 003577 541 DYLFLGDYVDRGQHSL--E------TITLLLALKIEYPE-NVHLIRGNHEAADI 585 (810)
Q Consensus 541 ~~vfLGDyVDRG~~s~--e------vl~ll~~lk~~~p~-~v~llrGNHE~~~~ 585 (810)
-+|+.||+|+.+.... + .-.+...++..+|. -|+.+.||||....
T Consensus 71 fii~tGD~v~h~~~~~~~~~~~~~~~~~~~~~l~~~~~~~pv~~~~GNHD~~p~ 124 (296)
T cd00842 71 FILWTGDLVRHDVDEQTPETLVLISISNLTSLLKKAFPDTPVYPALGNHDSYPV 124 (296)
T ss_pred EEEEcCCCCCCCchhhchhHHHHHHHHHHHHHHHHhCCCCCEEEcCCCCCCCcc
Confidence 5788999998776421 1 22233345544554 59999999998654
No 173
>PRK09419 bifunctional 2',3'-cyclic nucleotide 2'-phosphodiesterase/3'-nucleotidase precursor protein; Reviewed
Probab=67.73 E-value=7.5 Score=50.35 Aligned_cols=66 Identities=18% Similarity=0.176 Sum_probs=38.8
Q ss_pred CeEEEecCCCCHH---HHHHHHHHhCCCCCCCCcceeeEEEeccccCCCCCh-----HHHHHHHHHHhhcCCCcEEEecC
Q 003577 507 PVKVFGDLHGQFG---DLMRLFDEYGFPSTAGDITYIDYLFLGDYVDRGQHS-----LETITLLLALKIEYPENVHLIRG 578 (810)
Q Consensus 507 pi~vvGDiHG~~~---~L~~~l~~~~~~~~~~~~~~~~~vfLGDyVDRG~~s-----~evl~ll~~lk~~~p~~v~llrG 578 (810)
.|+.+.|+||++. .+..+++...-.... .-++..||+++..+.+ ..++.+|-++. --++..|
T Consensus 662 ~Il~~nD~Hg~l~g~~r~~~~i~~~r~~~~~-----~l~ld~GD~~~gs~~~~~~~g~~~~~~ln~lg-----~d~~~~G 731 (1163)
T PRK09419 662 TILHTNDFHGHLDGAAKRVTKIKEVKEENPN-----TILVDAGDVYQGSLYSNLLKGLPVLKMMKEMG-----YDASTFG 731 (1163)
T ss_pred EEEEEeecccCCCCHHHHHHHHHHHHhhCCC-----eEEEecCCCCCCcchhhhcCChHHHHHHhCcC-----CCEEEec
Confidence 3788999999863 334444443211111 1233379999987644 23445544442 3356899
Q ss_pred Cccc
Q 003577 579 NHEA 582 (810)
Q Consensus 579 NHE~ 582 (810)
|||.
T Consensus 732 NHEf 735 (1163)
T PRK09419 732 NHEF 735 (1163)
T ss_pred cccc
Confidence 9996
No 174
>cd07409 MPP_CD73_N CD73 ecto-5'-nucleotidase and related proteins, N-terminal metallophosphatase domain. CD73 is a mammalian ecto-5'-nucleotidase expressed in endothelial cells and lymphocytes that catalyzes the conversion of 5'-AMP to adenosine in the final step of a pathway that generates adenosine from ATP. This pathway also includes a CD39 nucleoside triphosphate dephosphorylase that mediates the dephosphorylation of ATP to ADP and then to 5'-AMP. These enzymes all have an N-terminal metallophosphatase domain and a C-terminal 5'nucleotidase domain. The N-terminal metallophosphatase domain belongs to a large superfamily of distantly related metallophosphatases (MPPs) that includes: Mre11/SbcD-like exonucleases, Dbr1-like RNA lariat debranching enzymes, YfcE-like phosphodiesterases, purple acid phosphatases (PAPs), YbbF-like UDP-2,3-diacylglucosamine hydrolases, and acid sphingomyelinases (ASMases). MPPs are functionally diverse, but all share a conserved domain with an active si
Probab=66.82 E-value=13 Score=39.85 Aligned_cols=24 Identities=13% Similarity=0.331 Sum_probs=15.9
Q ss_pred CHHHHHHHHHhc-CCcEEEEecccc
Q 003577 691 GPDRVSDFCKRN-KLQLIIRAHECV 714 (810)
Q Consensus 691 g~~~~~~fl~~~-~l~~iiR~H~~~ 714 (810)
|.+.-.++.++. ++++||=||+-+
T Consensus 193 G~~~d~~la~~~~giD~IiggH~H~ 217 (281)
T cd07409 193 GYEVDKEIARKVPGVDVIVGGHSHT 217 (281)
T ss_pred CchhHHHHHHcCCCCcEEEeCCcCc
Confidence 444444556554 899999998654
No 175
>KOG2055 consensus WD40 repeat protein [General function prediction only]
Probab=66.10 E-value=2.4e+02 Score=32.08 Aligned_cols=151 Identities=13% Similarity=0.132 Sum_probs=74.2
Q ss_pred CEEEEECccCCCCCccCcEEEEEccCCceEEEEEeecCCCCCcccccEEEEE-CCcEEEEEccCCCCCCCCcEEEEecCC
Q 003577 35 TMVVFQGGIGPAGHSTDDLYVLDLTNDKFKWHRVVVQGQGPGPRYGHVMDLV-SQRYLVSVSGNDGKRVLSDAWALDTAQ 113 (810)
Q Consensus 35 ~~lyv~GG~~~~~~~~~dl~~lDl~t~~~~W~~v~~~g~~P~~R~~Hs~~~v-~~~~l~VfGG~~g~~~~ndv~~yd~~~ 113 (810)
.-+.+.+|.+. .-.+|..|-++|. .-..+... ..|.. +++.. .+...++++|... =+|.||+.+
T Consensus 225 ~plllvaG~d~----~lrifqvDGk~N~-~lqS~~l~-~fPi~----~a~f~p~G~~~i~~s~rrk-----y~ysyDle~ 289 (514)
T KOG2055|consen 225 APLLLVAGLDG----TLRIFQVDGKVNP-KLQSIHLE-KFPIQ----KAEFAPNGHSVIFTSGRRK-----YLYSYDLET 289 (514)
T ss_pred CceEEEecCCC----cEEEEEecCccCh-hheeeeec-cCccc----eeeecCCCceEEEecccce-----EEEEeeccc
Confidence 47778888763 2356777777653 11111111 12322 12222 2232555666532 278899988
Q ss_pred CCcEEEEecCCCCCCCcccceEEEEeCCcEEEEEcccCCCCCccccEEEEEeCCCCeEEEEeCCCCCCCcccceEEEEEC
Q 003577 114 KPYVWQRLNPEGDRPSARMYATASARSDGMFLLCGGRDASGAPLADAYGLLMHRNGQWEWTLAPGVAPSPRYQHAAVFVG 193 (810)
Q Consensus 114 ~~~~W~~i~~~g~~P~~R~~hsa~~~~~~~l~v~GG~~~~g~~l~d~~~l~~~~~~~W~~~~~~g~~P~~R~~hsav~~~ 193 (810)
. +-+++.+....+. +.-+...+..++.++++-|..+. +..+.. .++.| +... .-.++..-.+...+
T Consensus 290 a--k~~k~~~~~g~e~-~~~e~FeVShd~~fia~~G~~G~------I~lLha-kT~el--i~s~--KieG~v~~~~fsSd 355 (514)
T KOG2055|consen 290 A--KVTKLKPPYGVEE-KSMERFEVSHDSNFIAIAGNNGH------IHLLHA-KTKEL--ITSF--KIEGVVSDFTFSSD 355 (514)
T ss_pred c--ccccccCCCCccc-chhheeEecCCCCeEEEcccCce------EEeehh-hhhhh--hhee--eeccEEeeEEEecC
Confidence 8 8888876555542 22333333344446666665432 222222 23333 2211 11122222222234
Q ss_pred -CEEEEEcccCCCCCCCCCCceEEEEECCCCc
Q 003577 194 -ARLHVTGGALRGGRAIEGEAAVAVLDTAAGV 224 (810)
Q Consensus 194 -~~l~V~GG~~~~~~~~~~~~~l~~yD~~t~~ 224 (810)
..|++.||.. .+|+||+.++.
T Consensus 356 sk~l~~~~~~G----------eV~v~nl~~~~ 377 (514)
T KOG2055|consen 356 SKELLASGGTG----------EVYVWNLRQNS 377 (514)
T ss_pred CcEEEEEcCCc----------eEEEEecCCcc
Confidence 4567776653 29999998874
No 176
>KOG3325 consensus Membrane coat complex Retromer, subunit VPS29/PEP11 [Intracellular trafficking, secretion, and vesicular transport]
Probab=64.11 E-value=23 Score=33.73 Aligned_cols=104 Identities=28% Similarity=0.355 Sum_probs=64.9
Q ss_pred eEEEecCCC--CHHHHHHHHHHhCCCCCCCCcceeeEEEeccccCCCCChHHHHHHHHHHhhcCCCcEEEecCCccccch
Q 003577 508 VKVFGDLHG--QFGDLMRLFDEYGFPSTAGDITYIDYLFLGDYVDRGQHSLETITLLLALKIEYPENVHLIRGNHEAADI 585 (810)
Q Consensus 508 i~vvGDiHG--~~~~L~~~l~~~~~~~~~~~~~~~~~vfLGDyVDRG~~s~evl~ll~~lk~~~p~~v~llrGNHE~~~~ 585 (810)
+.++||+|= ...+|-.-|+++-.|..- ..++++|++ .|.|++.+|..+. ..++++||--|..
T Consensus 3 vL~lgD~HiP~Ra~~Lp~KFkklLvPgki-----~hilctGNl-----cs~e~~dylk~l~----~dvhiVrGeFD~~-- 66 (183)
T KOG3325|consen 3 VLVLGDLHIPHRANDLPAKFKKLLVPGKI-----QHILCTGNL-----CSKESYDYLKTLS----SDVHIVRGEFDEN-- 66 (183)
T ss_pred EEEeccccCCccccccCHHHHhccCCCce-----eEEEEeCCc-----chHHHHHHHHhhC----CCcEEEecccCcc--
Confidence 578999984 345565556665555432 278999996 4678999987764 6899999977652
Q ss_pred hhccCChHHHHHhhCCCCccccccccccccccCceeEEEcCcEEEecCCcCCcccchhhhhcccCCccc
Q 003577 586 NALFGFRLECIERMGENDGIWAWTRFNQLFNCLPLAALIEKKIICMHGGIGRSIHSVEQIEKLERPITM 654 (810)
Q Consensus 586 ~~~~gf~~e~~~~~~~~~~~~~~~~~~~~f~~lPla~~i~~~il~vHgGi~~~~~~~~~i~~~~rp~~~ 654 (810)
.+|.+.. ...+-.-+|-||||-.---..+.+.+.-+.|-+++
T Consensus 67 -----------~~yP~~k----------------vvtvGqfkIG~chGhqViP~gd~~sL~~LaRqldv 108 (183)
T KOG3325|consen 67 -----------LKYPENK----------------VVTVGQFKIGLCHGHQVIPWGDPESLALLARQLDV 108 (183)
T ss_pred -----------ccCCccc----------------eEEeccEEEEeecCcEeecCCCHHHHHHHHHhcCC
Confidence 2332210 00111237889999654333566666666665543
No 177
>COG1520 FOG: WD40-like repeat [Function unknown]
Probab=64.08 E-value=2.4e+02 Score=31.33 Aligned_cols=101 Identities=15% Similarity=0.187 Sum_probs=60.4
Q ss_pred eEEEec--CCCcEEEecCCCCCCccccccEEEEECCEEEEECccCCCCCccCcEEEEEccCCceEEEEEeecCCCCCccc
Q 003577 2 MFSLEN--GPAGVCRIRPAGEPPSPRAAHAAAAVGTMVVFQGGIGPAGHSTDDLYVLDLTNDKFKWHRVVVQGQGPGPRY 79 (810)
Q Consensus 2 l~~~~~--~t~~W~~l~~~g~~P~~R~~haa~~~~~~lyv~GG~~~~~~~~~dl~~lDl~t~~~~W~~v~~~g~~P~~R~ 79 (810)
+|+||. .+..|+.-... . ++..-..+..+..+|+.- ..+.++.+|..+.+..|..-...+ . ..+.
T Consensus 123 ~y~ld~~~G~~~W~~~~~~--~--~~~~~~~v~~~~~v~~~s-------~~g~~~al~~~tG~~~W~~~~~~~-~-~~~~ 189 (370)
T COG1520 123 LYALDASTGTLVWSRNVGG--S--PYYASPPVVGDGTVYVGT-------DDGHLYALNADTGTLKWTYETPAP-L-SLSI 189 (370)
T ss_pred EEEEECCCCcEEEEEecCC--C--eEEecCcEEcCcEEEEec-------CCCeEEEEEccCCcEEEEEecCCc-c-cccc
Confidence 688887 57789876543 1 444444444445555533 346789999998888898544322 1 2222
Q ss_pred ccEEEEECCcEEEEEccCCCCCCCCcEEEEecCCCCcEEEE
Q 003577 80 GHVMDLVSQRYLVSVSGNDGKRVLSDAWALDTAQKPYVWQR 120 (810)
Q Consensus 80 ~Hs~~~v~~~~l~VfGG~~g~~~~ndv~~yd~~~~~~~W~~ 120 (810)
..... +....+| +|... . -..++.+|.++....|+.
T Consensus 190 ~~~~~-~~~~~vy-~~~~~--~-~~~~~a~~~~~G~~~w~~ 225 (370)
T COG1520 190 YGSPA-IASGTVY-VGSDG--Y-DGILYALNAEDGTLKWSQ 225 (370)
T ss_pred ccCce-eecceEE-EecCC--C-cceEEEEEccCCcEeeee
Confidence 22222 4445355 44333 1 236999999999999985
No 178
>PF10282 Lactonase: Lactonase, 7-bladed beta-propeller; InterPro: IPR019405 6-phosphogluconolactonases (6PGL) 3.1.1.31 from EC, which hydrolyses 6-phosphogluconolactone to 6-phosphogluconate is opne of the enzymes in the pentose phosphate pathway. Two families of structurally dissimilar 6PGLs are known to exist: the Escherichia coli (strain K12) YbhE IPR022528 from INTERPRO [] and the Pseudomonas aeruginosa DevB IPR005900 from INTERPRO [] types. This entry contains bacterial 6-phosphogluconolactonases (6PGL) YbhE-type 3.1.1.31 from EC which hydrolyse 6-phosphogluconolactone to 6-phosphogluconate. The entry also contains the fungal muconate lactonizing enzyme carboxy-cis,cis-muconate cyclase 5.5.1.5 from EC and muconate cycloisomerase 5.5.1.1 from EC, which convert cis,cis-muconates to muconolactones and vice versa as part of the microbial beta-ketoadipate pathway. Structures have been reported for the E. coli 6-phosphogluconolactonase and Neurospora crassa muconate cycloisomerase. Structures of proteins in this family have revealed a 7-bladed beta-propeller fold [].; PDB: 3SCY_A 1L0Q_A 3HFQ_B 3FGB_A 1RI6_A 3U4Y_A 3BWS_A 1JOF_H.
Probab=63.30 E-value=1.7e+02 Score=32.24 Aligned_cols=176 Identities=17% Similarity=0.154 Sum_probs=80.0
Q ss_pred cEEEEE--CCEEEEECccCCCCCccCcEEEEEccCCceEEEEEeecCCCCCcccccEEEEECCcEEEEEccCCCCCCCCc
Q 003577 28 HAAAAV--GTMVVFQGGIGPAGHSTDDLYVLDLTNDKFKWHRVVVQGQGPGPRYGHVMDLVSQRYLVSVSGNDGKRVLSD 105 (810)
Q Consensus 28 haa~~~--~~~lyv~GG~~~~~~~~~dl~~lDl~t~~~~W~~v~~~g~~P~~R~~Hs~~~v~~~~l~VfGG~~g~~~~nd 105 (810)
|++... ++.||+.. .-.+.+++|++.....+........-+++.--.|....-+++++||..-. .+.
T Consensus 147 H~v~~~pdg~~v~v~d------lG~D~v~~~~~~~~~~~l~~~~~~~~~~G~GPRh~~f~pdg~~~Yv~~e~-----s~~ 215 (345)
T PF10282_consen 147 HQVVFSPDGRFVYVPD------LGADRVYVYDIDDDTGKLTPVDSIKVPPGSGPRHLAFSPDGKYAYVVNEL-----SNT 215 (345)
T ss_dssp EEEEE-TTSSEEEEEE------TTTTEEEEEEE-TTS-TEEEEEEEECSTTSSEEEEEE-TTSSEEEEEETT-----TTE
T ss_pred eeEEECCCCCEEEEEe------cCCCEEEEEEEeCCCceEEEeeccccccCCCCcEEEEcCCcCEEEEecCC-----CCc
Confidence 555555 34677643 12478999998765423433222111222222344433356778887643 455
Q ss_pred EEEEecCCCCcEEEEecCCCCCC---Ccc-cceEEEEeCC-cEEEEEcccCCCCCccccEEEEEe-CCCCeEEEEeCC-C
Q 003577 106 AWALDTAQKPYVWQRLNPEGDRP---SAR-MYATASARSD-GMFLLCGGRDASGAPLADAYGLLM-HRNGQWEWTLAP-G 178 (810)
Q Consensus 106 v~~yd~~~~~~~W~~i~~~g~~P---~~R-~~hsa~~~~~-~~l~v~GG~~~~g~~l~d~~~l~~-~~~~~W~~~~~~-g 178 (810)
+.+|+......+|+.+......| ... ..+......+ +.+|+.- +. .+.+..+.. ..+++.+.+... .
T Consensus 216 v~v~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~i~ispdg~~lyvsn-r~-----~~sI~vf~~d~~~g~l~~~~~~~~ 289 (345)
T PF10282_consen 216 VSVFDYDPSDGSLTEIQTISTLPEGFTGENAPAEIAISPDGRFLYVSN-RG-----SNSISVFDLDPATGTLTLVQTVPT 289 (345)
T ss_dssp EEEEEEETTTTEEEEEEEEESCETTSCSSSSEEEEEE-TTSSEEEEEE-CT-----TTEEEEEEECTTTTTEEEEEEEEE
T ss_pred EEEEeecccCCceeEEEEeeeccccccccCCceeEEEecCCCEEEEEe-cc-----CCEEEEEEEecCCCceEEEEEEeC
Confidence 66666663333555543222222 222 2333444445 4555533 22 244555555 344555444321 1
Q ss_pred CCCCcccceEEEE-E-CCEEEEEcccCCCCCCCCCCceEEEEECCCCcEEEccc
Q 003577 179 VAPSPRYQHAAVF-V-GARLHVTGGALRGGRAIEGEAAVAVLDTAAGVWLDRNG 230 (810)
Q Consensus 179 ~~P~~R~~hsav~-~-~~~l~V~GG~~~~~~~~~~~~~l~~yD~~t~~W~~v~~ 230 (810)
....|| .+++ - +..|||.....+ . -.++..|.+++.+..+..
T Consensus 290 ~G~~Pr---~~~~s~~g~~l~Va~~~s~-~------v~vf~~d~~tG~l~~~~~ 333 (345)
T PF10282_consen 290 GGKFPR---HFAFSPDGRYLYVANQDSN-T------VSVFDIDPDTGKLTPVGS 333 (345)
T ss_dssp SSSSEE---EEEE-TTSSEEEEEETTTT-E------EEEEEEETTTTEEEEEEE
T ss_pred CCCCcc---EEEEeCCCCEEEEEecCCC-e------EEEEEEeCCCCcEEEecc
Confidence 112244 2333 2 445555433221 1 124444678888887653
No 179
>PLN00033 photosystem II stability/assembly factor; Provisional
Probab=62.08 E-value=2.8e+02 Score=31.45 Aligned_cols=97 Identities=11% Similarity=0.165 Sum_probs=48.3
Q ss_pred ecCCCcEEEecCCCCCCccc--cccEEEEECCEEEEECccCCCCCccCcEEEEEccCCceEEEEEeecCCCCCcccccEE
Q 003577 6 ENGPAGVCRIRPAGEPPSPR--AAHAAAAVGTMVVFQGGIGPAGHSTDDLYVLDLTNDKFKWHRVVVQGQGPGPRYGHVM 83 (810)
Q Consensus 6 ~~~t~~W~~l~~~g~~P~~R--~~haa~~~~~~lyv~GG~~~~~~~~~dl~~lDl~t~~~~W~~v~~~g~~P~~R~~Hs~ 83 (810)
+....+|++..........+ ...+....++..|+.|-.+ .+|-..+.-.+|.++...-..|.. .+..
T Consensus 116 ~DGG~tW~~~~~~~~~~~~~~~~l~~v~f~~~~g~~vG~~G---------~il~T~DgG~tW~~~~~~~~~p~~--~~~i 184 (398)
T PLN00033 116 KDGGKTWVPRSIPSAEDEDFNYRFNSISFKGKEGWIIGKPA---------ILLHTSDGGETWERIPLSPKLPGE--PVLI 184 (398)
T ss_pred cCCCCCceECccCcccccccccceeeeEEECCEEEEEcCce---------EEEEEcCCCCCceECccccCCCCC--ceEE
Confidence 34678998864221111112 1233444567788876542 334333333569987653223433 2334
Q ss_pred EEECCcEEEEEccCCCCCCCCcEEEEecCCCCcEEEEe
Q 003577 84 DLVSQRYLVSVSGNDGKRVLSDAWALDTAQKPYVWQRL 121 (810)
Q Consensus 84 ~~v~~~~l~VfGG~~g~~~~ndv~~yd~~~~~~~W~~i 121 (810)
..++.+..++.|.. ..+++-+-.-. +|+.+
T Consensus 185 ~~~~~~~~~ivg~~------G~v~~S~D~G~--tW~~~ 214 (398)
T PLN00033 185 KATGPKSAEMVTDE------GAIYVTSNAGR--NWKAA 214 (398)
T ss_pred EEECCCceEEEecc------ceEEEECCCCC--CceEc
Confidence 44555556666622 22444333334 79876
No 180
>PF08268 FBA_3: F-box associated domain; InterPro: IPR013187 This domain occurs in a diverse superfamily of genes in plants. Most examples are found C-terminal to an F-box (IPR001810 from INTERPRO), a 60 amino acid motif involved in ubiquitination of target proteins to mark them for degradation. Two-hybid experiments support the idea that most members are interchangeable F-box subunits of SCF E3 complexes []. Some members have two copies of this domain.
Probab=61.76 E-value=59 Score=30.18 Aligned_cols=72 Identities=14% Similarity=0.075 Sum_probs=42.7
Q ss_pred CCCcEEEEecCCCCcEEEEecCCCCCCCcccceEEEEeCCcEEEEEcccCCCCCccccEEEEEeCCCCeEEEEeC
Q 003577 102 VLSDAWALDTAQKPYVWQRLNPEGDRPSARMYATASARSDGMFLLCGGRDASGAPLADAYGLLMHRNGQWEWTLA 176 (810)
Q Consensus 102 ~~ndv~~yd~~~~~~~W~~i~~~g~~P~~R~~hsa~~~~~~~l~v~GG~~~~g~~l~d~~~l~~~~~~~W~~~~~ 176 (810)
.-+-+-+||+.++ +|+.+................... |++.+..-........-++|.+.+..+.+|+....
T Consensus 18 ~~~~IvsFDv~~E--~f~~i~~P~~~~~~~~~~~L~~~~-G~L~~v~~~~~~~~~~~~iWvLeD~~k~~Wsk~~~ 89 (129)
T PF08268_consen 18 DNNVIVSFDVRSE--KFRFIKLPEDPYSSDCSSTLIEYK-GKLALVSYNDQGEPDSIDIWVLEDYEKQEWSKKHI 89 (129)
T ss_pred CCcEEEEEEcCCc--eEEEEEeeeeeccccCccEEEEeC-CeEEEEEecCCCCcceEEEEEeeccccceEEEEEE
Confidence 3456889999999 887775421112233334444444 44444432222112357899999887889987754
No 181
>PF04042 DNA_pol_E_B: DNA polymerase alpha/epsilon subunit B; InterPro: IPR007185 DNA polymerase epsilon is essential for cell viability and chromosomal DNA replication in budding yeast. In addition, DNA polymerase epsilon may be involved in DNA repair and cell-cycle checkpoint control. The enzyme consists of at least four subunits in mammalian cells as well as in yeast. The largest subunit of DNA polymerase epsilon is responsible for polymerase activity. In mouse, the DNA polymerase epsilon subunit B is the second largest subunit of the DNA polymerase. A part of the N-terminal was found to be responsible for the interaction with SAP18. Experimental evidence suggests that this subunit may recruit histone deacetylase to the replication fork to modify the chromatin structure [].; GO: 0003677 DNA binding, 0003887 DNA-directed DNA polymerase activity, 0006260 DNA replication; PDB: 3E0J_C 3FLO_G.
Probab=59.52 E-value=15 Score=37.28 Aligned_cols=72 Identities=11% Similarity=0.157 Sum_probs=36.9
Q ss_pred eEEEecCCCC-----HHHHHHHHHHhC-CCCCCCCcceeeEEEeccccCCCCChH-------------HHHHHHHHHhhc
Q 003577 508 VKVFGDLHGQ-----FGDLMRLFDEYG-FPSTAGDITYIDYLFLGDYVDRGQHSL-------------ETITLLLALKIE 568 (810)
Q Consensus 508 i~vvGDiHG~-----~~~L~~~l~~~~-~~~~~~~~~~~~~vfLGDyVDRG~~s~-------------evl~ll~~lk~~ 568 (810)
|+|++|+|=. ++.|.++|..+. .... ..+|++|+++|.-.... +-+..+.++...
T Consensus 1 Iv~~Sg~~~~~~~~~~~~L~~~l~~~~~~~~p------~~lIl~G~fi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 74 (209)
T PF04042_consen 1 IVFASGPFLDSDNLSLEPLRDLLSGVEDASKP------DVLILMGPFIDSPHPYISSGSVPDSYSFEEDFLKELDSFLES 74 (209)
T ss_dssp EEEEES--CTTT-HHHHHHHHHHHCCCHCTTE------CEEEEES-SCBTTSHHHHHT---HHCCHHHHHHHHCHHHHCC
T ss_pred CEEEecCccCCCHhHHHHHHHHHHhccccCCC------cEEEEeCCCcCccccccccccccccccccHHHHHHHHHHHhh
Confidence 5677777755 556666776555 2211 27999999999633221 111112221111
Q ss_pred C--CCcEEEecCCccccch
Q 003577 569 Y--PENVHLIRGNHEAADI 585 (810)
Q Consensus 569 ~--p~~v~llrGNHE~~~~ 585 (810)
- --+|+++.|+||....
T Consensus 75 i~~~~~vvlvPg~~D~~~~ 93 (209)
T PF04042_consen 75 ILPSTQVVLVPGPNDPTSS 93 (209)
T ss_dssp CHCCSEEEEE--TTCTT-S
T ss_pred cccccEEEEeCCCcccccc
Confidence 1 2479999999998665
No 182
>PF09910 DUF2139: Uncharacterized protein conserved in archaea (DUF2139); InterPro: IPR016675 There is currently no experimental data for members of this group or their homologues, nor do they exhibit features indicative of any function.
Probab=58.97 E-value=2.6e+02 Score=30.16 Aligned_cols=166 Identities=17% Similarity=0.161 Sum_probs=0.0
Q ss_pred CCcccc---cEEEEECCcEEEEEccC-----------------CCCCCCCcEEEEecCCCCcE--EEEecCCCCCCCccc
Q 003577 75 PGPRYG---HVMDLVSQRYLVSVSGN-----------------DGKRVLSDAWALDTAQKPYV--WQRLNPEGDRPSARM 132 (810)
Q Consensus 75 P~~R~~---Hs~~~v~~~~l~VfGG~-----------------~g~~~~ndv~~yd~~~~~~~--W~~i~~~g~~P~~R~ 132 (810)
|.||++ |.++..-+..|| |||+ +-..-++-+..||++....+ |++--.....-..-.
T Consensus 30 ~~P~SGGDTYNAV~~vDd~Iy-FGGWVHAPa~y~gk~~g~~~IdF~NKYSHVH~yd~e~~~VrLLWkesih~~~~WaGEV 108 (339)
T PF09910_consen 30 PPPTSGGDTYNAVEWVDDFIY-FGGWVHAPAVYEGKGDGRATIDFRNKYSHVHEYDTENDSVRLLWKESIHDKTKWAGEV 108 (339)
T ss_pred CCCCCCCccceeeeeecceEE-EeeeecCCceeeeccCCceEEEEeeccceEEEEEcCCCeEEEEEecccCCccccccch
Q ss_pred ceEEEEeCCcEEEEEcccCCCCCccccEEEEEeCCCCeEEEEeCCCCCCCcccceEEEEECCEEEEEcccCCCCCCCCCC
Q 003577 133 YATASARSDGMFLLCGGRDASGAPLADAYGLLMHRNGQWEWTLAPGVAPSPRYQHAAVFVGARLHVTGGALRGGRAIEGE 212 (810)
Q Consensus 133 ~hsa~~~~~~~l~v~GG~~~~g~~l~d~~~l~~~~~~~W~~~~~~g~~P~~R~~hsav~~~~~l~V~GG~~~~~~~~~~~ 212 (810)
.--..---+..+++.= .+|..---+|.++.. ++.-++...... +..---|-.++++= =-..+|...
T Consensus 109 SdIlYdP~~D~LLlAR---~DGh~nLGvy~ldr~-~g~~~~L~~~ps-~KG~~~~D~a~F~i-~~~~~g~~~-------- 174 (339)
T PF09910_consen 109 SDILYDPYEDRLLLAR---ADGHANLGVYSLDRR-TGKAEKLSSNPS-LKGTLVHDYACFGI-NNFHKGVSG-------- 174 (339)
T ss_pred hheeeCCCcCEEEEEe---cCCcceeeeEEEccc-CCceeeccCCCC-cCceEeeeeEEEec-cccccCCce--------
Q ss_pred ceEEEEECCCCcE--EEcccCccCCCCCCCCCCCCCCCCCCcceeeEEEEeCCEEEEE
Q 003577 213 AAVAVLDTAAGVW--LDRNGLVTSSRTSKGHGEHDPSLELMRRCRHASASIGVRIYIY 268 (810)
Q Consensus 213 ~~l~~yD~~t~~W--~~v~~~~~~~~~~~~~~~~~~~~~p~~R~~hs~~~~~~~i~I~ 268 (810)
+.+||+.+++| +..+.. ....+.+...|....++..-+++|.|
T Consensus 175 --i~~~Dli~~~~~~e~f~~~-----------~s~Dg~~~~~~~~G~~~s~ynR~faF 219 (339)
T PF09910_consen 175 --IHCLDLISGKWVIESFDVS-----------LSVDGGPVIRPELGAMASAYNRLFAF 219 (339)
T ss_pred --EEEEEccCCeEEEEecccc-----------cCCCCCceEeeccccEEEEeeeEEEE
No 183
>TIGR03075 PQQ_enz_alc_DH PQQ-dependent dehydrogenase, methanol/ethanol family. This protein family has a phylogenetic distribution very similar to that coenzyme PQQ biosynthesis enzymes, as shown by partial phylogenetic profiling. Genes in this family often are found adjacent to the PQQ biosynthesis genes themselves. An unusual, strained disulfide bond between adjacent Cys residues contributes to PQQ-binding, as does a Trp residue that is part of a PQQ enzyme repeat (see pfam01011). Characterized members include the dehydrogenase subunit of a membrane-anchored, three subunit alcohol (ethanol) dehydrogenase of Gluconobacter suboxydans, a homodimeric ethanol dehydrogenase in Pseudomonas aeruginosa, and the large subunit of an alpha2/beta2 heterotetrameric methanol dehydrogenase in Methylobacterium extorquens.
Probab=57.98 E-value=3.8e+02 Score=31.64 Aligned_cols=110 Identities=15% Similarity=0.098 Sum_probs=58.9
Q ss_pred eEEEecCC--CcEEEecCCC-C-CC---ccccccEEEEECCEEEEECccCCCCCccCcEEEEEccCCceEEEEEeecCCC
Q 003577 2 MFSLENGP--AGVCRIRPAG-E-PP---SPRAAHAAAAVGTMVVFQGGIGPAGHSTDDLYVLDLTNDKFKWHRVVVQGQG 74 (810)
Q Consensus 2 l~~~~~~t--~~W~~l~~~g-~-~P---~~R~~haa~~~~~~lyv~GG~~~~~~~~~dl~~lDl~t~~~~W~~v~~~g~~ 74 (810)
|+.+|..+ ..|+.-.... . .+ ........++.+++||+... ...++.+|..|.+..|+.-.. ..
T Consensus 81 v~AlDa~TGk~lW~~~~~~~~~~~~~~~~~~~~rg~av~~~~v~v~t~-------dg~l~ALDa~TGk~~W~~~~~--~~ 151 (527)
T TIGR03075 81 VYALDAKTGKELWKYDPKLPDDVIPVMCCDVVNRGVALYDGKVFFGTL-------DARLVALDAKTGKVVWSKKNG--DY 151 (527)
T ss_pred EEEEECCCCceeeEecCCCCcccccccccccccccceEECCEEEEEcC-------CCEEEEEECCCCCEEeecccc--cc
Confidence 67788654 5586532111 0 11 00112234556778887432 256999999998889986331 11
Q ss_pred CC-cccccEEEEECCcEEEEEccCCCCCCCCcEEEEecCCCCcEEEEe
Q 003577 75 PG-PRYGHVMDLVSQRYLVSVSGNDGKRVLSDAWALDTAQKPYVWQRL 121 (810)
Q Consensus 75 P~-~R~~Hs~~~v~~~~l~VfGG~~g~~~~ndv~~yd~~~~~~~W~~i 121 (810)
.. .....+.++.++ .+|+.........-..++.||.++....|+.-
T Consensus 152 ~~~~~~tssP~v~~g-~Vivg~~~~~~~~~G~v~AlD~~TG~~lW~~~ 198 (527)
T TIGR03075 152 KAGYTITAAPLVVKG-KVITGISGGEFGVRGYVTAYDAKTGKLVWRRY 198 (527)
T ss_pred cccccccCCcEEECC-EEEEeecccccCCCcEEEEEECCCCceeEecc
Confidence 11 112223344554 35543221111233568999999988788754
No 184
>KOG2476 consensus Uncharacterized conserved protein [Function unknown]
Probab=57.90 E-value=24 Score=39.76 Aligned_cols=71 Identities=18% Similarity=0.328 Sum_probs=52.2
Q ss_pred cCCeEEEecCCCCHHHHHHHHHHhCCCCCCCCcceeeEEEeccccCCCCChHHHHHHHHHHhhcCCCcEEEecCCc
Q 003577 505 RAPVKVFGDLHGQFGDLMRLFDEYGFPSTAGDITYIDYLFLGDYVDRGQHSLETITLLLALKIEYPENVHLIRGNH 580 (810)
Q Consensus 505 ~~pi~vvGDiHG~~~~L~~~l~~~~~~~~~~~~~~~~~vfLGDyVDRG~~s~evl~ll~~lk~~~p~~v~llrGNH 580 (810)
+++|.||||.-|.+..|.+-.+...-.. | ++.-++++|++.+--.++.|++.+.... ...|--++++-+|-
T Consensus 5 ~~kILv~Gd~~Gr~~eli~rI~~v~Kk~--G--pFd~liCvGnfF~~~~~~~e~~~ykng~-~~vPiptY~~g~~~ 75 (528)
T KOG2476|consen 5 DAKILVCGDVEGRFDELIKRIQKVNKKS--G--PFDLLICVGNFFGHDTQNAEVEKYKNGT-KKVPIPTYFLGDNA 75 (528)
T ss_pred CceEEEEcCccccHHHHHHHHHHHhhcC--C--CceEEEEecccCCCccchhHHHHHhcCC-ccCceeEEEecCCC
Confidence 3689999999999999988776654321 1 1125778999999877888888887654 35676777776665
No 185
>cd07406 MPP_CG11883_N Drosophila melanogaster CG11883 and related proteins, N-terminal metallophosphatase domain. CG11883 is an uncharacterized Drosophila melanogaster UshA-like protein with two domains, an N-terminal metallophosphatase domain and a C-terminal nucleotidase domain. The N-terminal metallophosphatase domain belongs to a large superfamily of distantly related metallophosphatases (MPPs) that includes: Mre11/SbcD-like exonucleases, Dbr1-like RNA lariat debranching enzymes, YfcE-like phosphodiesterases, purple acid phosphatases (PAPs), YbbF-like UDP-2,3-diacylglucosamine hydrolases, and acid sphingomyelinases (ASMases). MPPs are functionally diverse, but all share a conserved domain with an active site consisting of two metal ions (usually manganese, iron, or zinc) coordinated with octahedral geometry by a cage of histidine, aspartate, and asparagine residues. The conserved domain is a double beta-sheet sandwich with a di-metal active site made up of residues located at th
Probab=56.85 E-value=20 Score=37.85 Aligned_cols=57 Identities=23% Similarity=0.184 Sum_probs=34.4
Q ss_pred CCHHHHHHHHHHhCCCCCCCCcceeeEEEeccccCCCCC-----hHHHHHHHHHHhhcCCCcEEEecCCccc
Q 003577 516 GQFGDLMRLFDEYGFPSTAGDITYIDYLFLGDYVDRGQH-----SLETITLLLALKIEYPENVHLIRGNHEA 582 (810)
Q Consensus 516 G~~~~L~~~l~~~~~~~~~~~~~~~~~vfLGDyVDRG~~-----s~evl~ll~~lk~~~p~~v~llrGNHE~ 582 (810)
|-+..+..+++...-.... .-+|..||+++..+. ...++..|-.+. .-+...||||.
T Consensus 21 gG~~rl~~~i~~~r~~~~~-----~l~l~~GD~~~g~~~~~~~~g~~~~~~l~~l~-----~d~~~~GNHef 82 (257)
T cd07406 21 GGAARFATLRKQLRKENPN-----TLVLFSGDVLSPSLLSTATKGKQMVPVLNALG-----VDLACFGNHEF 82 (257)
T ss_pred CCHHHHHHHHHHHHhcCCC-----EEEEECCCccCCccchhhcCCccHHHHHHhcC-----CcEEeeccccc
Confidence 4466677777665432111 146669999987753 234555555543 23567899996
No 186
>PF14870 PSII_BNR: Photosynthesis system II assembly factor YCF48; PDB: 2XBG_A.
Probab=54.55 E-value=3.2e+02 Score=29.74 Aligned_cols=165 Identities=15% Similarity=0.199 Sum_probs=68.5
Q ss_pred eEEEecCCCcEEEecCCCCCCccccccEEEEECCEEEEECccCCCCCccCcEEEEEccCCceEEEEEeecCCCCCccccc
Q 003577 2 MFSLENGPAGVCRIRPAGEPPSPRAAHAAAAVGTMVVFQGGIGPAGHSTDDLYVLDLTNDKFKWHRVVVQGQGPGPRYGH 81 (810)
Q Consensus 2 l~~~~~~t~~W~~l~~~g~~P~~R~~haa~~~~~~lyv~GG~~~~~~~~~dl~~lDl~t~~~~W~~v~~~g~~P~~R~~H 81 (810)
++.-.....+|+.+......+....-++....++..++.|..+ .+|...+.-.+|.+++.....|.. .+
T Consensus 39 il~T~DGG~tW~~~~~~~~~~~~~~l~~I~f~~~~g~ivG~~g---------~ll~T~DgG~tW~~v~l~~~lpgs--~~ 107 (302)
T PF14870_consen 39 ILKTTDGGKTWQPVSLDLDNPFDYHLNSISFDGNEGWIVGEPG---------LLLHTTDGGKTWERVPLSSKLPGS--PF 107 (302)
T ss_dssp EEEESSTTSS-EE-----S-----EEEEEEEETTEEEEEEETT---------EEEEESSTTSS-EE----TT-SS---EE
T ss_pred EEEECCCCccccccccCCCccceeeEEEEEecCCceEEEcCCc---------eEEEecCCCCCcEEeecCCCCCCC--ee
Confidence 3444456788988763322221122233334577888876432 234444333569998754334433 34
Q ss_pred EEEEECCcEEEEEccCCCCCCCCcEEEEecCCCCcEEEEecCCCCCCCcccceEEEEeCCcEEEEEcccCCCCCccccEE
Q 003577 82 VMDLVSQRYLVSVSGNDGKRVLSDAWALDTAQKPYVWQRLNPEGDRPSARMYATASARSDGMFLLCGGRDASGAPLADAY 161 (810)
Q Consensus 82 s~~~v~~~~l~VfGG~~g~~~~ndv~~yd~~~~~~~W~~i~~~g~~P~~R~~hsa~~~~~~~l~v~GG~~~~g~~l~d~~ 161 (810)
....+++..++++|.. ..+| -....--+|+.+..... ..--.+....++.+++.+.+. +++
T Consensus 108 ~i~~l~~~~~~l~~~~------G~iy--~T~DgG~tW~~~~~~~~----gs~~~~~r~~dG~~vavs~~G-------~~~ 168 (302)
T PF14870_consen 108 GITALGDGSAELAGDR------GAIY--RTTDGGKTWQAVVSETS----GSINDITRSSDGRYVAVSSRG-------NFY 168 (302)
T ss_dssp EEEEEETTEEEEEETT--------EE--EESSTTSSEEEEE-S--------EEEEEE-TTS-EEEEETTS-------SEE
T ss_pred EEEEcCCCcEEEEcCC------CcEE--EeCCCCCCeeEcccCCc----ceeEeEEECCCCcEEEEECcc-------cEE
Confidence 4555666667776533 2243 34434448998754211 222233345677777776432 233
Q ss_pred EEEeCCCCeEEEEeCCCCCCCcccceEEEEE-CCEEEEEc
Q 003577 162 GLLMHRNGQWEWTLAPGVAPSPRYQHAAVFV-GARLHVTG 200 (810)
Q Consensus 162 ~l~~~~~~~W~~~~~~g~~P~~R~~hsav~~-~~~l~V~G 200 (810)
.-...-...|....-.. .|.--++.+. ++.+++..
T Consensus 169 ~s~~~G~~~w~~~~r~~----~~riq~~gf~~~~~lw~~~ 204 (302)
T PF14870_consen 169 SSWDPGQTTWQPHNRNS----SRRIQSMGFSPDGNLWMLA 204 (302)
T ss_dssp EEE-TT-SS-EEEE--S----SS-EEEEEE-TTS-EEEEE
T ss_pred EEecCCCccceEEccCc----cceehhceecCCCCEEEEe
Confidence 33233233577776542 3444455554 55666654
No 187
>COG0737 UshA 5'-nucleotidase/2',3'-cyclic phosphodiesterase and related esterases [Nucleotide transport and metabolism]
Probab=54.14 E-value=17 Score=42.70 Aligned_cols=71 Identities=25% Similarity=0.265 Sum_probs=41.8
Q ss_pred CCeEEEecCCCCHH------------HHHHHHHHhCCCCCCCCcceeeEEEeccccCCCC------ChHHHHHHHHHHhh
Q 003577 506 APVKVFGDLHGQFG------------DLMRLFDEYGFPSTAGDITYIDYLFLGDYVDRGQ------HSLETITLLLALKI 567 (810)
Q Consensus 506 ~pi~vvGDiHG~~~------------~L~~~l~~~~~~~~~~~~~~~~~vfLGDyVDRG~------~s~evl~ll~~lk~ 567 (810)
-.|+-..|+||++. -+-++.........+.. ..-+|=.||+++..+ ....++.+|-.++
T Consensus 27 l~ilhtnD~H~~l~~~~~~~~~~~~~g~~~~~~~v~~~ra~~~--~~llld~GD~~~G~~l~~~~~~g~~~~~~mN~m~- 103 (517)
T COG0737 27 LTILHTNDLHGHLEPYDYDDDGDTDGGLARIATLVKQLRAENK--NVLLLDAGDLIQGSPLSDYLTKGEPTVDLLNALG- 103 (517)
T ss_pred EEEEEeccccccceeccccccCcccccHHHHHHHHHHHHhhcC--CeEEEeCCcccCCccccccccCCChHHHHHhhcC-
Confidence 45888999999998 33333322211111110 112333999999844 3445666776665
Q ss_pred cCCCcEEEecCCcccc
Q 003577 568 EYPENVHLIRGNHEAA 583 (810)
Q Consensus 568 ~~p~~v~llrGNHE~~ 583 (810)
.=.+..||||.-
T Consensus 104 ----yDa~tiGNHEFd 115 (517)
T COG0737 104 ----YDAMTLGNHEFD 115 (517)
T ss_pred ----CcEEeecccccc
Confidence 336778999973
No 188
>COG1768 Predicted phosphohydrolase [General function prediction only]
Probab=53.50 E-value=26 Score=34.60 Aligned_cols=41 Identities=29% Similarity=0.307 Sum_probs=30.4
Q ss_pred eEEEecccc--CCCCChHHHHHHHHHHhhcCCCcEEEecCCccccch
Q 003577 541 DYLFLGDYV--DRGQHSLETITLLLALKIEYPENVHLIRGNHEAADI 585 (810)
Q Consensus 541 ~~vfLGDyV--DRG~~s~evl~ll~~lk~~~p~~v~llrGNHE~~~~ 585 (810)
.++.-||+- -|=+...+-+.+|-+| |+.=+++|||||...-
T Consensus 46 iVllpGDiSWaM~l~ea~~Dl~~i~~L----PG~K~m~rGNHDYWw~ 88 (230)
T COG1768 46 IVLLPGDISWAMRLEEAEEDLRFIGDL----PGTKYMIRGNHDYWWS 88 (230)
T ss_pred EEEecccchhheechhhhhhhhhhhcC----CCcEEEEecCCccccc
Confidence 466689985 4556666667777665 7889999999998653
No 189
>cd07405 MPP_UshA_N Escherichia coli UshA and related proteins, N-terminal metallophosphatase domain. UshA is a bacterial periplasmic enzyme with UDP-sugar hydrolase and dinucleoside-polyphosphate hydrolase activities associated with its N-terminal metallophosphatase domain, and 5'-nucleotidase activity associated with its C-terminal domain. UshA has been studied in Escherichia coli where it is expressed from the ushA gene as an immature precursor and proteolytically cleaved to form a mature product upon export to the periplasm. UshA hydrolyzes many different nucleotides and nucleotide derivitives and has been shown to degrade external UDP-glucose to uridine, glucose 1-phosphate and phosphate for utilization by the cell. The N-terminal metallophosphatase domain belongs to a large superfamily of distantly related metallophosphatases (MPPs) that includes: Mre11/SbcD-like exonucleases, Dbr1-like RNA lariat debranching enzymes, YfcE-like phosphodiesterases, purple acid phosphatases (PAPs
Probab=52.14 E-value=20 Score=38.49 Aligned_cols=19 Identities=21% Similarity=0.356 Sum_probs=13.7
Q ss_pred HHHHh---cCCcEEEEeccccc
Q 003577 697 DFCKR---NKLQLIIRAHECVM 715 (810)
Q Consensus 697 ~fl~~---~~l~~iiR~H~~~~ 715 (810)
++.++ .++++||=||+-+.
T Consensus 200 ~lA~~~~~~giD~IigGHsH~~ 221 (285)
T cd07405 200 EMARALPAGGLDLIVGGHSQDP 221 (285)
T ss_pred HHHHhcCCCCCCEEEeCCCCcc
Confidence 44455 58999999997653
No 190
>PF06433 Me-amine-dh_H: Methylamine dehydrogenase heavy chain (MADH); InterPro: IPR009451 Methylamine dehydrogenase (1.4.99.3 from EC) is a periplasmic quinoprotein found in several methyltrophic bacteria []. It is induced when grown on methylamine as a carbon source MADH and catalyses the oxidative deamination of amines to their corresponding aldehydes. The redox cofactor of this enzyme is tryptophan tryptophylquinone (TTQ). Electrons derived from the oxidation of methylamine are passed to an electron acceptor, which is usually the blue-copper protein amicyanin (IPR002386 from INTERPRO). RCH2NH2 + H2O + acceptor = RCHO + NH3 + reduced acceptor MADH is a hetero-tetramer, comprised of two heavy subunits and two light subunits. The heavy subunit forms a seven-bladed beta-propeller like structure [].; GO: 0030058 amine dehydrogenase activity, 0030416 methylamine metabolic process, 0055114 oxidation-reduction process, 0042597 periplasmic space; PDB: 3RN1_F 3SVW_F 3PXT_F 3L4O_F 3L4M_D 3SJL_F 3PXS_D 3ORV_F 3RMZ_F 3RLM_F ....
Probab=51.82 E-value=3.3e+02 Score=30.04 Aligned_cols=100 Identities=13% Similarity=0.121 Sum_probs=54.9
Q ss_pred eEEEecCCCcEEEecCCCCCCccccccEEEEE-CCEEEEECcc---CCCCCccCcEEEEEccCCceEEEEEeecCCCCCc
Q 003577 2 MFSLENGPAGVCRIRPAGEPPSPRAAHAAAAV-GTMVVFQGGI---GPAGHSTDDLYVLDLTNDKFKWHRVVVQGQGPGP 77 (810)
Q Consensus 2 l~~~~~~t~~W~~l~~~g~~P~~R~~haa~~~-~~~lyv~GG~---~~~~~~~~dl~~lDl~t~~~~W~~v~~~g~~P~~ 77 (810)
+|.+|..+.+-.- ..|..-.++.+..- ++.+|+..=+ +..+..++-+-.||..|-..++....|. .+
T Consensus 19 v~viD~d~~k~lG-----mi~~g~~~~~~~spdgk~~y~a~T~~sR~~rG~RtDvv~~~D~~TL~~~~EI~iP~----k~ 89 (342)
T PF06433_consen 19 VYVIDADSGKLLG-----MIDTGFLGNVALSPDGKTIYVAETFYSRGTRGERTDVVEIWDTQTLSPTGEIEIPP----KP 89 (342)
T ss_dssp EEEEETTTTEEEE-----EEEEESSEEEEE-TTSSEEEEEEEEEEETTEEEEEEEEEEEETTTTEEEEEEEETT----S-
T ss_pred EEEEECCCCcEEE-----EeecccCCceeECCCCCEEEEEEEEEeccccccceeEEEEEecCcCcccceEecCC----cc
Confidence 4566666555422 23344444544333 3466665433 2234466778899999976677765542 22
Q ss_pred ccc-----cEE-EEECCcEEEEEccCCCCCCCCcEEEEecCCC
Q 003577 78 RYG-----HVM-DLVSQRYLVSVSGNDGKRVLSDAWALDTAQK 114 (810)
Q Consensus 78 R~~-----Hs~-~~v~~~~l~VfGG~~g~~~~ndv~~yd~~~~ 114 (810)
|.. +.. ...+++++||+= ..+...|-+.|++.+
T Consensus 90 R~~~~~~~~~~~ls~dgk~~~V~N----~TPa~SVtVVDl~~~ 128 (342)
T PF06433_consen 90 RAQVVPYKNMFALSADGKFLYVQN----FTPATSVTVVDLAAK 128 (342)
T ss_dssp B--BS--GGGEEE-TTSSEEEEEE----ESSSEEEEEEETTTT
T ss_pred hheecccccceEEccCCcEEEEEc----cCCCCeEEEEECCCC
Confidence 332 222 233677788762 234567888899888
No 191
>TIGR03074 PQQ_membr_DH membrane-bound PQQ-dependent dehydrogenase, glucose/quinate/shikimate family. This protein family has a phylogenetic distribution very similar to that coenzyme PQQ biosynthesis enzymes, as shown by partial phylogenetic profiling. Members of this family have several predicted transmembrane helices in the N-terminal region, and include the quinoprotein glucose dehydrogenase (EC 1.1.5.2) of Escherichia coli and the quinate/shikimate dehydrogenase of Acinetobacter sp. ADP1 (EC 1.1.99.25). Sequences closely related except for the absense of the N-terminal hydrophobic region, scoring in the gray zone between the trusted and noise cutoffs, include PQQ-dependent glycerol (EC 1.1.99.22) and and other polyol (sugar alcohol) dehydrogenases.
Probab=51.57 E-value=3.6e+02 Score=33.37 Aligned_cols=35 Identities=20% Similarity=0.261 Sum_probs=25.9
Q ss_pred cEEEEECCEEEEECccCCCCCccCcEEEEEccCCceEEEEEe
Q 003577 28 HAAAAVGTMVVFQGGIGPAGHSTDDLYVLDLTNDKFKWHRVV 69 (810)
Q Consensus 28 haa~~~~~~lyv~GG~~~~~~~~~dl~~lDl~t~~~~W~~v~ 69 (810)
.+-+++++.||+... .+.++.+|..|.+..|+.-+
T Consensus 188 ~TPlvvgg~lYv~t~-------~~~V~ALDa~TGk~lW~~d~ 222 (764)
T TIGR03074 188 ATPLKVGDTLYLCTP-------HNKVIALDAATGKEKWKFDP 222 (764)
T ss_pred cCCEEECCEEEEECC-------CCeEEEEECCCCcEEEEEcC
Confidence 344567889998643 36799999999888898643
No 192
>cd07407 MPP_YHR202W_N Saccharomyces cerevisiae YHR202W and related proteins, N-terminal metallophosphatase domain. YHR202W is an uncharacterized Saccharomyces cerevisiae UshA-like protein with two domains, an N-terminal metallophosphatase domain and a C-terminal nucleotidase domain. The N-terminal metallophosphatase domain belongs to a large superfamily of distantly related metallophosphatases (MPPs) that includes: Mre11/SbcD-like exonucleases, Dbr1-like RNA lariat debranching enzymes, YfcE-like phosphodiesterases, purple acid phosphatases (PAPs), YbbF-like UDP-2,3-diacylglucosamine hydrolases, and acid sphingomyelinases (ASMases). MPPs are functionally diverse, but all share a conserved domain with an active site consisting of two metal ions (usually manganese, iron, or zinc) coordinated with octahedral geometry by a cage of histidine, aspartate, and asparagine residues. The conserved domain is a double beta-sheet sandwich with a di-metal active site made up of residues located at
Probab=49.22 E-value=25 Score=37.75 Aligned_cols=38 Identities=24% Similarity=0.128 Sum_probs=23.1
Q ss_pred eEEEeccccCCCCCh-------HHHHHHHHHHhhcCCCcEEEecCCcccc
Q 003577 541 DYLFLGDYVDRGQHS-------LETITLLLALKIEYPENVHLIRGNHEAA 583 (810)
Q Consensus 541 ~~vfLGDyVDRG~~s-------~evl~ll~~lk~~~p~~v~llrGNHE~~ 583 (810)
-+|..||+++.-+.+ .-++.++-.+ ..=.+..||||.-
T Consensus 53 Llld~GD~~qGs~~~~~~~~~g~~~~~~mN~m-----gyDa~tlGNHEFd 97 (282)
T cd07407 53 LLVDTGDLHDGNGLSDASPPPGSYSNPIFRMM-----PYDLLTIGNHELY 97 (282)
T ss_pred EEEeCCCccCCeeceeeecCCChHHHHHHHhc-----CCcEEeecccccC
Confidence 355599999754322 2234444444 2456789999983
No 193
>KOG0649 consensus WD40 repeat protein [General function prediction only]
Probab=46.30 E-value=3.7e+02 Score=28.16 Aligned_cols=137 Identities=15% Similarity=0.126 Sum_probs=68.3
Q ss_pred eEEEEEeec--CCCCCcccccEEEEE-CCcEEEEEccCCCCCCCCcEEEEecCCCCcEEEEecCCCCCCCcccceEEEEe
Q 003577 63 FKWHRVVVQ--GQGPGPRYGHVMDLV-SQRYLVSVSGNDGKRVLSDAWALDTAQKPYVWQRLNPEGDRPSARMYATASAR 139 (810)
Q Consensus 63 ~~W~~v~~~--g~~P~~R~~Hs~~~v-~~~~l~VfGG~~g~~~~ndv~~yd~~~~~~~W~~i~~~g~~P~~R~~hsa~~~ 139 (810)
..|...+|. +..|.|--. +|.+. ..+.++..||. ..+|+.|+++. +-++.- .|.. -+-|+.+..
T Consensus 99 ~lwe~~~P~~~~~~evPeIN-am~ldP~enSi~~AgGD------~~~y~~dlE~G--~i~r~~-rGHt---DYvH~vv~R 165 (325)
T KOG0649|consen 99 RLWEVKIPMQVDAVEVPEIN-AMWLDPSENSILFAGGD------GVIYQVDLEDG--RIQREY-RGHT---DYVHSVVGR 165 (325)
T ss_pred hhhhhcCccccCcccCCccc-eeEeccCCCcEEEecCC------eEEEEEEecCC--EEEEEE-cCCc---ceeeeeeec
Confidence 346655543 223444333 34344 44557766754 34788999988 554432 2221 456777664
Q ss_pred CCcEEEEEcccCCCCCccccEEEEEeCCCCeEEEE-eCCCCCCCcc--cce--EEEEECCEEEEEcccCCCCCCCCCCce
Q 003577 140 SDGMFLLCGGRDASGAPLADAYGLLMHRNGQWEWT-LAPGVAPSPR--YQH--AAVFVGARLHVTGGALRGGRAIEGEAA 214 (810)
Q Consensus 140 ~~~~l~v~GG~~~~g~~l~d~~~l~~~~~~~W~~~-~~~g~~P~~R--~~h--sav~~~~~l~V~GG~~~~~~~~~~~~~ 214 (810)
+..-=++.|+.++. .-+|... +++-..+ ++-..+..-| -+- .+...+....|.||...
T Consensus 166 ~~~~qilsG~EDGt----vRvWd~k---t~k~v~~ie~yk~~~~lRp~~g~wigala~~edWlvCGgGp~---------- 228 (325)
T KOG0649|consen 166 NANGQILSGAEDGT----VRVWDTK---TQKHVSMIEPYKNPNLLRPDWGKWIGALAVNEDWLVCGGGPK---------- 228 (325)
T ss_pred ccCcceeecCCCcc----EEEEecc---ccceeEEeccccChhhcCcccCceeEEEeccCceEEecCCCc----------
Confidence 44334566766553 3344333 2222332 2222222223 222 44455667788887643
Q ss_pred EEEEECCCCcEEEcc
Q 003577 215 VAVLDTAAGVWLDRN 229 (810)
Q Consensus 215 l~~yD~~t~~W~~v~ 229 (810)
+-.|++.+.+-..+-
T Consensus 229 lslwhLrsse~t~vf 243 (325)
T KOG0649|consen 229 LSLWHLRSSESTCVF 243 (325)
T ss_pred eeEEeccCCCceEEE
Confidence 445666666554443
No 194
>cd08162 MPP_PhoA_N Synechococcus sp. strain PCC 7942 PhoA and related proteins, N-terminal metallophosphatase domain. Synechococcus sp. strain PCC 7942 PhoA is a large atypical alkaline phosphatase. It is known to be transported across the inner cytoplasmic membrane and into the periplasmic space. In vivo inactivation of the gene encoding PhoA leads to a loss of extracellular, phosphate-regulated phosphatase activity, but does not appear to affect the cells capacity for phosphate uptake. PhoA may play a role in scavenging phosphate during growth of Synechococcus sp. strain PCC 7942 in its natural environment. PhoA belongs to a domain family which includes the bacterial enzyme UshA and several other related enzymes including SoxB, CpdB, YhcR, and CD73. All members have a similar domain architecture which includes an N-terminal metallophosphatase domain and a C-terminal nucleotidase domain. The N-terminal metallophosphatase domain belongs to a large superfamily of distantly relat
Probab=44.48 E-value=36 Score=37.22 Aligned_cols=69 Identities=22% Similarity=0.137 Sum_probs=38.4
Q ss_pred eEEEecCCCCHH------HHHHHHHHhCCCCCCCCcceeeEEEeccccCCCCC-------------hHHHHHHHHHHhhc
Q 003577 508 VKVFGDLHGQFG------DLMRLFDEYGFPSTAGDITYIDYLFLGDYVDRGQH-------------SLETITLLLALKIE 568 (810)
Q Consensus 508 i~vvGDiHG~~~------~L~~~l~~~~~~~~~~~~~~~~~vfLGDyVDRG~~-------------s~evl~ll~~lk~~ 568 (810)
|+-+-|+||++. .+..+++...-.-.. .....-+|..||.+.-++. ..-++.+|-++.
T Consensus 3 IlhtnD~Hg~~~~~gg~ar~a~~i~~~r~~~~~-~~~~~l~ldaGD~~qGs~~~~~~~~~~~~~~~G~~~i~~mN~~g-- 79 (313)
T cd08162 3 LLHTSDGESGLLAEDDAPNFSALVNALKDEAAA-EYDNTLTLSSGDNFIPGPFFNASLDPLIYGDPGRADILILNALG-- 79 (313)
T ss_pred EEEecccccCccccCCHHHHHHHHHHHHHhhhc-cCCCeEEEecCccccCchhhhhhccccccccCChHHHHHHhccC--
Confidence 567889999964 333334433211000 0011246669999875442 334555555554
Q ss_pred CCCcEEEecCCccc
Q 003577 569 YPENVHLIRGNHEA 582 (810)
Q Consensus 569 ~p~~v~llrGNHE~ 582 (810)
.=.+..||||.
T Consensus 80 ---~Da~tlGNHEF 90 (313)
T cd08162 80 ---VQAIALGNHEF 90 (313)
T ss_pred ---CcEEecccccc
Confidence 33677999996
No 195
>TIGR00282 metallophosphoesterase, MG_246/BB_0505 family. A member of this family from Mycoplasma Pneumoniae has been crystallized and described as a novel phosphatase.
Probab=44.23 E-value=45 Score=35.46 Aligned_cols=67 Identities=18% Similarity=0.160 Sum_probs=45.0
Q ss_pred CeEEEecCCCC--HHHHHHHHHHhCCCCCCCCcceeeEEEeccccCCC-CChHHHHHHHHHHhhcCCCcEEEecCCcccc
Q 003577 507 PVKVFGDLHGQ--FGDLMRLFDEYGFPSTAGDITYIDYLFLGDYVDRG-QHSLETITLLLALKIEYPENVHLIRGNHEAA 583 (810)
Q Consensus 507 pi~vvGDiHG~--~~~L~~~l~~~~~~~~~~~~~~~~~vfLGDyVDRG-~~s~evl~ll~~lk~~~p~~v~llrGNHE~~ 583 (810)
+|.++|||=|. ...|...|..+......+ -+|..||...-| --+-++...|..+-+ .++.+ |||+.-
T Consensus 2 ~ilfiGDi~G~~Gr~~l~~~L~~lk~~~~~D-----~vIaNgEn~~gG~Gi~~~~~~~L~~~Gv----DviT~-GNH~~D 71 (266)
T TIGR00282 2 KFLFIGDVYGKAGRKIVKNNLPQLKSKYQAD-----LVIANGENTTHGKGLTLKIYEFLKQSGV----NYITM-GNHTWF 71 (266)
T ss_pred eEEEEEecCCHHHHHHHHHHHHHHHHhCCCC-----EEEEcCcccCCCCCCCHHHHHHHHhcCC----CEEEc-cchhcc
Confidence 48899999999 466666666654322221 344479999766 457888888877642 35555 999974
No 196
>PTZ00235 DNA polymerase epsilon subunit B; Provisional
Probab=43.13 E-value=81 Score=33.88 Aligned_cols=76 Identities=13% Similarity=0.239 Sum_probs=48.4
Q ss_pred CCeEEEecCC----CCHHHHHHHHHHhC-CCCCCCCcceeeEEEeccccCCC----CChH----HHHHHHHHH-hhcCC-
Q 003577 506 APVKVFGDLH----GQFGDLMRLFDEYG-FPSTAGDITYIDYLFLGDYVDRG----QHSL----ETITLLLAL-KIEYP- 570 (810)
Q Consensus 506 ~pi~vvGDiH----G~~~~L~~~l~~~~-~~~~~~~~~~~~~vfLGDyVDRG----~~s~----evl~ll~~l-k~~~p- 570 (810)
..++|+||+| -.++.|.++|..+. .-+++ . ...-+||+|+++-+. ..+. |-..-|..+ ..+||
T Consensus 28 ~~~VilSDV~LD~p~tl~~L~kvf~~y~~~~~~~-~-~P~~fVL~GnF~S~p~~~~~~~~~~yk~~Fd~La~llls~fp~ 105 (291)
T PTZ00235 28 HNWIIMHDVYLDSPYTFEVLDKMLSLYVNTYPEN-E-LPVGFIFMGDFISLKFDYNRNFHKVYIKGFEKLSVMLISKFKL 105 (291)
T ss_pred eEEEEEEeeccCCHHHHHHHHHHHHHhhccCccc-C-CCeEEEEecCccCCcccCCCCchHHHHHHHHHHHHHHHHhChH
Confidence 4589999998 45678888888873 21211 1 133799999999763 2222 233333332 23455
Q ss_pred ----CcEEEecCCcccc
Q 003577 571 ----ENVHLIRGNHEAA 583 (810)
Q Consensus 571 ----~~v~llrGNHE~~ 583 (810)
.+++++.|-.|-.
T Consensus 106 L~~~s~fVFVPGpnDPw 122 (291)
T PTZ00235 106 ILEHCYLIFIPGINDPC 122 (291)
T ss_pred HHhcCeEEEECCCCCCC
Confidence 5899999999964
No 197
>KOG0646 consensus WD40 repeat protein [General function prediction only]
Probab=42.00 E-value=5.8e+02 Score=29.13 Aligned_cols=60 Identities=18% Similarity=0.320 Sum_probs=34.7
Q ss_pred cEEEEECCEEEEECccCCCCCccCcEEEEEccCCceEEEEEeecCCCCCcccccE--EEEECCcEEEEEccCCCC
Q 003577 28 HAAAAVGTMVVFQGGIGPAGHSTDDLYVLDLTNDKFKWHRVVVQGQGPGPRYGHV--MDLVSQRYLVSVSGNDGK 100 (810)
Q Consensus 28 haa~~~~~~lyv~GG~~~~~~~~~dl~~lDl~t~~~~W~~v~~~g~~P~~R~~Hs--~~~v~~~~l~VfGG~~g~ 100 (810)
|+.+..+.-.|++||. ...++|++.+++.. .+.. -.+-|... ....+++.+++-||.|+.
T Consensus 85 ~al~s~n~G~~l~ag~-----i~g~lYlWelssG~----LL~v----~~aHYQ~ITcL~fs~dgs~iiTgskDg~ 146 (476)
T KOG0646|consen 85 HALASSNLGYFLLAGT-----ISGNLYLWELSSGI----LLNV----LSAHYQSITCLKFSDDGSHIITGSKDGA 146 (476)
T ss_pred eeeecCCCceEEEeec-----ccCcEEEEEecccc----HHHH----HHhhccceeEEEEeCCCcEEEecCCCcc
Confidence 5566666556666663 24679999988854 1111 11122222 223467778888998875
No 198
>PRK04043 tolB translocation protein TolB; Provisional
Probab=41.85 E-value=5.8e+02 Score=29.07 Aligned_cols=153 Identities=12% Similarity=0.086 Sum_probs=76.2
Q ss_pred CcEEEEEccCCceEEEEEeecCCCCCcccccEEEEECCcEEEEEccCCCCCCCCcEEEEecCCCCcEEEEecCCCCCCCc
Q 003577 51 DDLYVLDLTNDKFKWHRVVVQGQGPGPRYGHVMDLVSQRYLVSVSGNDGKRVLSDAWALDTAQKPYVWQRLNPEGDRPSA 130 (810)
Q Consensus 51 ~dl~~lDl~t~~~~W~~v~~~g~~P~~R~~Hs~~~v~~~~l~VfGG~~g~~~~ndv~~yd~~~~~~~W~~i~~~g~~P~~ 130 (810)
.++|++|+.+.+ =.++.. .+. ........-+++.+++.-..++ -.++|.+|+.+. +++++.....
T Consensus 213 ~~Iyv~dl~tg~--~~~lt~---~~g-~~~~~~~SPDG~~la~~~~~~g---~~~Iy~~dl~~g--~~~~LT~~~~---- 277 (419)
T PRK04043 213 PTLYKYNLYTGK--KEKIAS---SQG-MLVVSDVSKDGSKLLLTMAPKG---QPDIYLYDTNTK--TLTQITNYPG---- 277 (419)
T ss_pred CEEEEEECCCCc--EEEEec---CCC-cEEeeEECCCCCEEEEEEccCC---CcEEEEEECCCC--cEEEcccCCC----
Confidence 389999998754 333332 111 1111111123334443332222 358999999888 8888754221
Q ss_pred ccceEEEEeCCc-EEEEEcccCCCCCccccEEEEEeCCCCeEEEEeCCCCCCCcccceEEEEECCEEEEEcccCCCCCCC
Q 003577 131 RMYATASARSDG-MFLLCGGRDASGAPLADAYGLLMHRNGQWEWTLAPGVAPSPRYQHAAVFVGARLHVTGGALRGGRAI 209 (810)
Q Consensus 131 R~~hsa~~~~~~-~l~v~GG~~~~g~~l~d~~~l~~~~~~~W~~~~~~g~~P~~R~~hsav~~~~~l~V~GG~~~~~~~~ 209 (810)
.........++ .|++...+.. ..++|.++.. ++..+.+...+. +. ....-+++.+++-.........
T Consensus 278 -~d~~p~~SPDG~~I~F~Sdr~g----~~~Iy~~dl~-~g~~~rlt~~g~-----~~-~~~SPDG~~Ia~~~~~~~~~~~ 345 (419)
T PRK04043 278 -IDVNGNFVEDDKRIVFVSDRLG----YPNIFMKKLN-SGSVEQVVFHGK-----NN-SSVSTYKNYIVYSSRETNNEFG 345 (419)
T ss_pred -ccCccEECCCCCEEEEEECCCC----CceEEEEECC-CCCeEeCccCCC-----cC-ceECCCCCEEEEEEcCCCcccC
Confidence 11222233343 4554443321 2578888775 445544443222 21 2333355544444332211111
Q ss_pred CCCceEEEEECCCCcEEEccc
Q 003577 210 EGEAAVAVLDTAAGVWLDRNG 230 (810)
Q Consensus 210 ~~~~~l~~yD~~t~~W~~v~~ 230 (810)
....+++++|+++..++.+..
T Consensus 346 ~~~~~I~v~d~~~g~~~~LT~ 366 (419)
T PRK04043 346 KNTFNLYLISTNSDYIRRLTA 366 (419)
T ss_pred CCCcEEEEEECCCCCeEECCC
Confidence 113579999999999887754
No 199
>KOG2321 consensus WD40 repeat protein [General function prediction only]
Probab=41.67 E-value=1.9e+02 Score=33.76 Aligned_cols=125 Identities=19% Similarity=0.132 Sum_probs=58.8
Q ss_pred CCcccccEEEEECC-cEEEEEccCCCCCCCCcEEEEecCCCCcEEEEecCCCCCCCcccceEEEEeCCcEEEEEcccCCC
Q 003577 75 PGPRYGHVMDLVSQ-RYLVSVSGNDGKRVLSDAWALDTAQKPYVWQRLNPEGDRPSARMYATASARSDGMFLLCGGRDAS 153 (810)
Q Consensus 75 P~~R~~Hs~~~v~~-~~l~VfGG~~g~~~~ndv~~yd~~~~~~~W~~i~~~g~~P~~R~~hsa~~~~~~~l~v~GG~~~~ 153 (810)
-.|++|.-|+.-.- .-||+.| . -++||+||++.. .|-..-... .+...+... ....-++.+||.++.
T Consensus 131 RIP~~GRDm~y~~~scDly~~g-s-----g~evYRlNLEqG--rfL~P~~~~---~~~lN~v~i-n~~hgLla~Gt~~g~ 198 (703)
T KOG2321|consen 131 RIPKFGRDMKYHKPSCDLYLVG-S-----GSEVYRLNLEQG--RFLNPFETD---SGELNVVSI-NEEHGLLACGTEDGV 198 (703)
T ss_pred ecCcCCccccccCCCccEEEee-c-----CcceEEEEcccc--ccccccccc---cccceeeee-cCccceEEecccCce
Confidence 45677777765432 2255433 2 267999999988 774321111 112222222 222347888876542
Q ss_pred CCccccEEEEEeCCCCeEEEEeCCCCCCCcccc-----eEEEEE-CCEEEEEcccCCCCCCCCCCceEEEEECCCCcE
Q 003577 154 GAPLADAYGLLMHRNGQWEWTLAPGVAPSPRYQ-----HAAVFV-GARLHVTGGALRGGRAIEGEAAVAVLDTAAGVW 225 (810)
Q Consensus 154 g~~l~d~~~l~~~~~~~W~~~~~~g~~P~~R~~-----hsav~~-~~~l~V~GG~~~~~~~~~~~~~l~~yD~~t~~W 225 (810)
+.+++.-...+-..+.+....+.--.+ -++..+ ++-|.+--|...+. +++||+.+.+=
T Consensus 199 ------VEfwDpR~ksrv~~l~~~~~v~s~pg~~~~~svTal~F~d~gL~~aVGts~G~--------v~iyDLRa~~p 262 (703)
T KOG2321|consen 199 ------VEFWDPRDKSRVGTLDAASSVNSHPGGDAAPSVTALKFRDDGLHVAVGTSTGS--------VLIYDLRASKP 262 (703)
T ss_pred ------EEEecchhhhhheeeecccccCCCccccccCcceEEEecCCceeEEeeccCCc--------EEEEEcccCCc
Confidence 222222211111222222111111111 233334 44666665654433 89999887653
No 200
>KOG1378 consensus Purple acid phosphatase [Carbohydrate transport and metabolism]
Probab=40.22 E-value=42 Score=38.15 Aligned_cols=34 Identities=9% Similarity=0.181 Sum_probs=26.3
Q ss_pred HHHHHHHHhcCCcEEEEeccccccceEEecCCeE
Q 003577 693 DRVSDFCKRNKLQLIIRAHECVMDGFERFAQGQL 726 (810)
Q Consensus 693 ~~~~~fl~~~~l~~iiR~H~~~~~G~~~~~~~~~ 726 (810)
..+++.+-++++++++=||.-.-+.+..-.+.++
T Consensus 322 ~~LE~l~~~~~VDvvf~GHvH~YER~~piyn~~~ 355 (452)
T KOG1378|consen 322 EGLEPLFVKYKVDVVFWGHVHRYERFCPIYNNTC 355 (452)
T ss_pred HHHHHHHHHhceeEEEeccceehhccchhhccee
Confidence 3689999999999999999877666554445544
No 201
>PRK05137 tolB translocation protein TolB; Provisional
Probab=38.72 E-value=6.3e+02 Score=28.65 Aligned_cols=148 Identities=17% Similarity=0.129 Sum_probs=68.6
Q ss_pred CcEEEEEccCCceEEEEEeecCCCCCcccccEEEEECCcEEEEEccCCCCCCCCcEEEEecCCCCcEEEEecCCCCCCCc
Q 003577 51 DDLYVLDLTNDKFKWHRVVVQGQGPGPRYGHVMDLVSQRYLVSVSGNDGKRVLSDAWALDTAQKPYVWQRLNPEGDRPSA 130 (810)
Q Consensus 51 ~dl~~lDl~t~~~~W~~v~~~g~~P~~R~~Hs~~~v~~~~l~VfGG~~g~~~~ndv~~yd~~~~~~~W~~i~~~g~~P~~ 130 (810)
..+|++|+.+.. ...+.. .+..-..... .-+++.+++....++ ..++|.+|+.+. ..+++......
T Consensus 226 ~~i~~~dl~~g~--~~~l~~---~~g~~~~~~~-SPDG~~la~~~~~~g---~~~Iy~~d~~~~--~~~~Lt~~~~~--- 291 (435)
T PRK05137 226 PRVYLLDLETGQ--RELVGN---FPGMTFAPRF-SPDGRKVVMSLSQGG---NTDIYTMDLRSG--TTTRLTDSPAI--- 291 (435)
T ss_pred CEEEEEECCCCc--EEEeec---CCCcccCcEE-CCCCCEEEEEEecCC---CceEEEEECCCC--ceEEccCCCCc---
Confidence 679999998743 444432 2221111111 113333443333332 257999999887 66666432111
Q ss_pred ccceEEEEeCCcEEEEEcccCCCCCccccEEEEEeCCCCeEEEEeCCCCCCCcccceEEEEECCEEEEEcccCCCCCCCC
Q 003577 131 RMYATASARSDGMFLLCGGRDASGAPLADAYGLLMHRNGQWEWTLAPGVAPSPRYQHAAVFVGARLHVTGGALRGGRAIE 210 (810)
Q Consensus 131 R~~hsa~~~~~~~l~v~GG~~~~g~~l~d~~~l~~~~~~~W~~~~~~g~~P~~R~~hsav~~~~~l~V~GG~~~~~~~~~ 210 (810)
........++..++|... ..+ ..++|.++.. .+..+.+... ..++......-+++.+++.....
T Consensus 292 --~~~~~~spDG~~i~f~s~-~~g--~~~Iy~~d~~-g~~~~~lt~~----~~~~~~~~~SpdG~~ia~~~~~~------ 355 (435)
T PRK05137 292 --DTSPSYSPDGSQIVFESD-RSG--SPQLYVMNAD-GSNPRRISFG----GGRYSTPVWSPRGDLIAFTKQGG------ 355 (435)
T ss_pred --cCceeEcCCCCEEEEEEC-CCC--CCeEEEEECC-CCCeEEeecC----CCcccCeEECCCCCEEEEEEcCC------
Confidence 111222344444444332 111 2467777754 3334444321 11222222223454444433211
Q ss_pred CCceEEEEECCCCcEEEc
Q 003577 211 GEAAVAVLDTAAGVWLDR 228 (810)
Q Consensus 211 ~~~~l~~yD~~t~~W~~v 228 (810)
....++++|+.+...+.+
T Consensus 356 ~~~~i~~~d~~~~~~~~l 373 (435)
T PRK05137 356 GQFSIGVMKPDGSGERIL 373 (435)
T ss_pred CceEEEEEECCCCceEec
Confidence 123589999877665554
No 202
>KOG1432 consensus Predicted DNA repair exonuclease SIA1 [General function prediction only]
Probab=37.57 E-value=86 Score=34.32 Aligned_cols=44 Identities=18% Similarity=0.207 Sum_probs=27.0
Q ss_pred eEEEeccccCCCC--ChHHHHHHHHHHhhcCCCcEEEecCCccccc
Q 003577 541 DYLFLGDYVDRGQ--HSLETITLLLALKIEYPENVHLIRGNHEAAD 584 (810)
Q Consensus 541 ~~vfLGDyVDRG~--~s~evl~ll~~lk~~~p~~v~llrGNHE~~~ 584 (810)
-+||+||.|+--. +...+|.-.++=.+.+.=-...+.||||...
T Consensus 103 lVVfTGD~i~g~~t~Da~~sl~kAvaP~I~~~IPwA~~lGNHDdes 148 (379)
T KOG1432|consen 103 LVVFTGDNIFGHSTQDAATSLMKAVAPAIDRKIPWAAVLGNHDDES 148 (379)
T ss_pred EEEEeCCcccccccHhHHHHHHHHhhhHhhcCCCeEEEeccccccc
Confidence 6899999998621 2333333333333444334678899998754
No 203
>PRK09420 cpdB bifunctional 2',3'-cyclic nucleotide 2'-phosphodiesterase/3'-nucleotidase periplasmic precursor protein; Reviewed
Probab=37.49 E-value=50 Score=39.94 Aligned_cols=68 Identities=18% Similarity=0.066 Sum_probs=40.2
Q ss_pred cCCeEEEecCCCCHHH----------------HHHHHHHhCCCCCCCCcceeeEEEeccccCCCCChH------------
Q 003577 505 RAPVKVFGDLHGQFGD----------------LMRLFDEYGFPSTAGDITYIDYLFLGDYVDRGQHSL------------ 556 (810)
Q Consensus 505 ~~pi~vvGDiHG~~~~----------------L~~~l~~~~~~~~~~~~~~~~~vfLGDyVDRG~~s~------------ 556 (810)
.-.|+-..|+||++.. +..+++...-... ..-+|-.||++...+.+-
T Consensus 25 ~L~IL~TnDlHg~l~~~dy~~~~~~~~~Glar~atli~~~R~e~~-----n~llvD~GD~~qGsp~~~~~~~~~~~~g~~ 99 (649)
T PRK09420 25 DLRIMETTDLHSNMMDFDYYKDKPTEKFGLVRTASLIKAARAEAK-----NSVLVDNGDLIQGSPLGDYMAAKGLKAGDV 99 (649)
T ss_pred eEEEEEEcccccCccCCccccCCcccccCHHHHHHHHHHHHHhCC-----CEEEEECCCcCCCchhhhhhhhccccCCCc
Confidence 4457889999999743 2233333321111 124566999998655431
Q ss_pred -HHHHHHHHHhhcCCCcEEEecCCccc
Q 003577 557 -ETITLLLALKIEYPENVHLIRGNHEA 582 (810)
Q Consensus 557 -evl~ll~~lk~~~p~~v~llrGNHE~ 582 (810)
-++..+-.|. .=....||||.
T Consensus 100 ~p~i~amN~lg-----yDa~tlGNHEF 121 (649)
T PRK09420 100 HPVYKAMNTLD-----YDVGNLGNHEF 121 (649)
T ss_pred chHHHHHHhcC-----CcEEeccchhh
Confidence 2455555553 44678899996
No 204
>TIGR01390 CycNucDiestase 2',3'-cyclic-nucleotide 2'-phosphodiesterase. 2',3'-cyclic-nucleotide 2'-phosphodiesterase is a bifunctional enzyme localized to the periplasm of Gram-negative bacteria. 2',3'-cyclic-nucleotide 2'-phosphodiesters are intermediates formed during the hydrolysis of RNA by the ribonuclease I, which is also found to the periplasm, and other enzymes of the RNAse T2 family. Bacteria are unable to transport 2',3'-cyclic-nucleotides into the cytoplasm. 2',3'-cyclic-nucleotide 2'-phosphodiesterase contains 2 active sites which catalyze the reactions that convert the 2',3'-cyclic-nucleotide into a 3'-nucleotide, which is then converted into nucleic acid and phosphate. Both final products can be transported into the cytoplasm. Thus, it has been suggested that 2',3'-cyclic-nucleotide 2'-phosphodiesterase has a 'scavenging' function. Experimental evidence indicates that 2',3'-cyclic-nucleotide 2'-phosphodiesterase enables Yersinia enterocolitica O:8 to grow on 2'3'-cAMP as a
Probab=35.90 E-value=53 Score=39.57 Aligned_cols=66 Identities=20% Similarity=0.082 Sum_probs=38.0
Q ss_pred CeEEEecCCCCHHH----------------HHHHHHHhCCCCCCCCcceeeEEEeccccCCCCCh-------------HH
Q 003577 507 PVKVFGDLHGQFGD----------------LMRLFDEYGFPSTAGDITYIDYLFLGDYVDRGQHS-------------LE 557 (810)
Q Consensus 507 pi~vvGDiHG~~~~----------------L~~~l~~~~~~~~~~~~~~~~~vfLGDyVDRG~~s-------------~e 557 (810)
.|+-..||||++.. +..+++...-... ..-+|-.||.+..-+.+ .-
T Consensus 4 ~Il~TnDlH~~l~~~dy~~~~~~~~~Glar~atli~~~R~e~~-----n~lllD~GD~~qGsp~~~~~~~~~~~~~~~~p 78 (626)
T TIGR01390 4 RIVETTDLHTNLMDYDYYKDKPTDKFGLTRTATLIKQARAEVK-----NSVLVDNGDLIQGSPLGDYMAAQGLKAGQMHP 78 (626)
T ss_pred EEEEEcCCccCccCCcccCCCCCCCcCHHHHHHHHHHHHhhCC-----CeEEEECCCcCCCccchhhhhhccccCCCcCh
Confidence 46778999999753 2333333321111 12455599999855433 22
Q ss_pred HHHHHHHHhhcCCCcEEEecCCccc
Q 003577 558 TITLLLALKIEYPENVHLIRGNHEA 582 (810)
Q Consensus 558 vl~ll~~lk~~~p~~v~llrGNHE~ 582 (810)
++.++-.|. .=....||||.
T Consensus 79 ~~~~mN~lg-----yDa~tlGNHEF 98 (626)
T TIGR01390 79 VYKAMNLLK-----YDVGNLGNHEF 98 (626)
T ss_pred HHHHHhhcC-----ccEEecccccc
Confidence 445554443 34677899995
No 205
>KOG2863 consensus RNA lariat debranching enzyme [RNA processing and modification]
Probab=35.21 E-value=40 Score=36.89 Aligned_cols=72 Identities=26% Similarity=0.424 Sum_probs=42.8
Q ss_pred CeEEEecCCCCHHHHHHHHH---HhCCCCCCCCcceeeEEEeccccC-CCCChHHHHHHHHH------------HhhcCC
Q 003577 507 PVKVFGDLHGQFGDLMRLFD---EYGFPSTAGDITYIDYLFLGDYVD-RGQHSLETITLLLA------------LKIEYP 570 (810)
Q Consensus 507 pi~vvGDiHG~~~~L~~~l~---~~~~~~~~~~~~~~~~vfLGDyVD-RG~~s~evl~ll~~------------lk~~~p 570 (810)
+|.|-|=-||+++.+-+-+. +.|--+-+ -+|++||+=. |...-+..+..--. =.++.|
T Consensus 2 rIaVqGCcHG~Ld~iYkti~~~ek~~~tkVD------LLlccGDFQavRn~~D~~siavPpKy~~m~~F~~YYsge~~AP 75 (456)
T KOG2863|consen 2 RIAVQGCCHGELDNIYKTISLIEKRGNTKVD------LLLCCGDFQAVRNEQDLKSIAVPPKYRRMGDFYKYYSGEIKAP 75 (456)
T ss_pred ceeeecccchhHHHHHHHHHHHHHcCCCCcc------EEEEccchHhhcchhhcccccCCHHHHHHHHHHHHhCCcccCc
Confidence 47788999999998875443 33322222 5788999863 33322222211111 122345
Q ss_pred CcEEEecCCccccc
Q 003577 571 ENVHLIRGNHEAAD 584 (810)
Q Consensus 571 ~~v~llrGNHE~~~ 584 (810)
=--.+|=||||.+.
T Consensus 76 VlTIFIGGNHEAsn 89 (456)
T KOG2863|consen 76 VLTIFIGGNHEASN 89 (456)
T ss_pred eeEEEecCchHHHH
Confidence 55678999999875
No 206
>PRK09419 bifunctional 2',3'-cyclic nucleotide 2'-phosphodiesterase/3'-nucleotidase precursor protein; Reviewed
Probab=35.19 E-value=49 Score=43.03 Aligned_cols=23 Identities=22% Similarity=0.420 Sum_probs=16.3
Q ss_pred HHHHHHHHHh-cCCcEEEEecccc
Q 003577 692 PDRVSDFCKR-NKLQLIIRAHECV 714 (810)
Q Consensus 692 ~~~~~~fl~~-~~l~~iiR~H~~~ 714 (810)
++++.+..++ -+++.||=||+-.
T Consensus 256 en~~~~la~~~~gID~Il~GHsH~ 279 (1163)
T PRK09419 256 EDSVYDLAEKTKGIDAIVAGHQHG 279 (1163)
T ss_pred chHHHHHHHhCCCCcEEEeCCCcc
Confidence 4455566655 4899999999643
No 207
>COG4880 Secreted protein containing C-terminal beta-propeller domain distantly related to WD-40 repeats [General function prediction only]
Probab=33.79 E-value=6.1e+02 Score=28.81 Aligned_cols=29 Identities=31% Similarity=0.408 Sum_probs=22.4
Q ss_pred EEEECCEEEEEcccCCCCCCCCCCceEEEEECCCCcEEEccc
Q 003577 189 AVFVGARLHVTGGALRGGRAIEGEAAVAVLDTAAGVWLDRNG 230 (810)
Q Consensus 189 av~~~~~l~V~GG~~~~~~~~~~~~~l~~yD~~t~~W~~v~~ 230 (810)
+.++++.+|++||.. +|+|| .+.|+.+..
T Consensus 571 A~fi~dylY~vg~~e-----------v~~ld--enswe~Vge 599 (603)
T COG4880 571 AFFIKDYLYLVGGNE-----------VWKLD--ENSWEVVGE 599 (603)
T ss_pred eEEecceEEEeccce-----------eEEec--cchHhhhhh
Confidence 678899999999852 78886 467877653
No 208
>PF02191 OLF: Olfactomedin-like domain; InterPro: IPR003112 The olfactomedin-domain was first identified in olfactomedin, an extracellular matrix protein of the olfactory neuroepithelium []. Members of this extracellular domain-family have since been shown to be present in several metazoan proteins, such as latrophilins, myocilins, optimedins and noelins, the latter being involved in the generation of neural crest cells. Myocilin is of considerable interest, as mutations in its olfactomedin-domain can lead to glaucoma []. The olfactomedin-domains in myocilin and optimedin are essential for the interaction between these two proteins [].; GO: 0005515 protein binding
Probab=33.41 E-value=6e+02 Score=26.78 Aligned_cols=115 Identities=17% Similarity=0.155 Sum_probs=57.6
Q ss_pred CCCcEEEEecCCCCcE-EEEecCCCCC---CCcccceE---EEEeCCcEEEEEcccCCCCCccccEEEEEeC---CCCeE
Q 003577 102 VLSDAWALDTAQKPYV-WQRLNPEGDR---PSARMYAT---ASARSDGMFLLCGGRDASGAPLADAYGLLMH---RNGQW 171 (810)
Q Consensus 102 ~~ndv~~yd~~~~~~~-W~~i~~~g~~---P~~R~~hs---a~~~~~~~l~v~GG~~~~g~~l~d~~~l~~~---~~~~W 171 (810)
..+++-+||+.++... |..++..+-. |-...+++ .++-.+|.-+|+.-....+... +-.++.. -..+|
T Consensus 87 ~s~~IvkydL~t~~v~~~~~L~~A~~~n~~~y~~~~~t~iD~AvDE~GLWvIYat~~~~g~iv--vskld~~tL~v~~tw 164 (250)
T PF02191_consen 87 NSRNIVKYDLTTRSVVARRELPGAGYNNRFPYYWSGYTDIDFAVDENGLWVIYATEDNNGNIV--VSKLDPETLSVEQTW 164 (250)
T ss_pred CCceEEEEECcCCcEEEEEECCccccccccceecCCCceEEEEEcCCCEEEEEecCCCCCcEE--EEeeCcccCceEEEE
Confidence 3578999999999777 7766443221 21122222 2344557666666544432100 1111111 12234
Q ss_pred EEEeCCCCCCCcccceEEEEECCEEEEEcccCCCCCCCCCCceEEEEECCCCcEEEcc
Q 003577 172 EWTLAPGVAPSPRYQHAAVFVGARLHVTGGALRGGRAIEGEAAVAVLDTAAGVWLDRN 229 (810)
Q Consensus 172 ~~~~~~g~~P~~R~~hsav~~~~~l~V~GG~~~~~~~~~~~~~l~~yD~~t~~W~~v~ 229 (810)
. .. .+....+. +.++=|.||++....... ..-.+.||+.+++=..+.
T Consensus 165 ~--T~---~~k~~~~n-aFmvCGvLY~~~s~~~~~-----~~I~yafDt~t~~~~~~~ 211 (250)
T PF02191_consen 165 N--TS---YPKRSAGN-AFMVCGVLYATDSYDTRD-----TEIFYAFDTYTGKEEDVS 211 (250)
T ss_pred E--ec---cCchhhcc-eeeEeeEEEEEEECCCCC-----cEEEEEEECCCCceecee
Confidence 4 21 12233333 334456778876654332 233689999988765544
No 209
>PRK05583 ribosomal protein L7Ae family protein; Provisional
Probab=32.98 E-value=41 Score=30.33 Aligned_cols=68 Identities=18% Similarity=0.202 Sum_probs=51.2
Q ss_pred CCceeeeCHHHHHHHHHhcCCcEEEEeccccccceEE------ecCCeEEEEEcc---CCCCCCCCCeEEEEEEcCcc
Q 003577 684 GPGLVTFGPDRVSDFCKRNKLQLIIRAHECVMDGFER------FAQGQLITLFSA---TNYCGTANNAGAILVVGRGL 752 (810)
Q Consensus 684 g~~~~~fg~~~~~~fl~~~~l~~iiR~H~~~~~G~~~------~~~~~~itvfSa---~~y~~~~~n~ga~l~~~~~~ 752 (810)
.+|.+.+|.+.+.+-+++...+++|.+-++-+++-+- +++-.+++.|+. ..-||. .+.+++.+.|+.+
T Consensus 14 rAGklv~G~~~v~~aik~gk~~lVI~A~D~s~~~kkki~~~~~~~~vp~~~~~t~~eLg~a~Gk-~~~~~iai~d~g~ 90 (104)
T PRK05583 14 KAGKLLEGYNKCEEAIKKKKVYLIIISNDISENSKNKFKNYCNKYNIPYIEGYSKEELGNAIGR-DEIKILGVKDKNM 90 (104)
T ss_pred HhCCeeecHHHHHHHHHcCCceEEEEeCCCCHhHHHHHHHHHHHcCCCEEEecCHHHHHHHhCC-CCeEEEEEeChHH
Confidence 3455789999999999999999999999998887542 234567887775 245775 3477777777654
No 210
>PF13088 BNR_2: BNR repeat-like domain; PDB: 2F11_A 2F0Z_A 1VCU_B 2F25_B 1SO7_A 2F29_A 1SNT_A 2F13_A 2F28_A 2F27_A ....
Probab=30.89 E-value=2.9e+02 Score=28.86 Aligned_cols=132 Identities=16% Similarity=0.209 Sum_probs=64.5
Q ss_pred ecCCCcEEEecCCCCCCccccccEEEE-E-CCEEEEECccCCCCCccCcEEEEEccCCceEEEEEeecCCCCCcccccEE
Q 003577 6 ENGPAGVCRIRPAGEPPSPRAAHAAAA-V-GTMVVFQGGIGPAGHSTDDLYVLDLTNDKFKWHRVVVQGQGPGPRYGHVM 83 (810)
Q Consensus 6 ~~~t~~W~~l~~~g~~P~~R~~haa~~-~-~~~lyv~GG~~~~~~~~~dl~~lDl~t~~~~W~~v~~~g~~P~~R~~Hs~ 83 (810)
+....+|+...+.. +.....+.+.+ . ++.|+++--.. .. +.++..--.++-.+|+...+. ..|.+.....+
T Consensus 141 ~D~G~tW~~~~~~~--~~~~~~e~~~~~~~dG~l~~~~R~~-~~---~~~~~~~S~D~G~TWs~~~~~-~~~~~~~~~~~ 213 (275)
T PF13088_consen 141 DDGGKTWSSGSPIP--DGQGECEPSIVELPDGRLLAVFRTE-GN---DDIYISRSTDGGRTWSPPQPT-NLPNPNSSISL 213 (275)
T ss_dssp SSTTSSEEEEEECE--CSEEEEEEEEEEETTSEEEEEEEEC-SS---TEEEEEEESSTTSS-EEEEEE-ECSSCCEEEEE
T ss_pred CCCCceeecccccc--ccCCcceeEEEECCCCcEEEEEEcc-CC---CcEEEEEECCCCCcCCCceec-ccCcccCCceE
Confidence 33567798876433 22344444444 2 45777665432 11 144544444444579986543 25666666666
Q ss_pred EEECCcEEEEEccCCCCCCCCcEEEEecCCCCcEEEEecCCCCCC-CcccceEEEEeCCcEEEE
Q 003577 84 DLVSQRYLVSVSGNDGKRVLSDAWALDTAQKPYVWQRLNPEGDRP-SARMYATASARSDGMFLL 146 (810)
Q Consensus 84 ~~v~~~~l~VfGG~~g~~~~ndv~~yd~~~~~~~W~~i~~~g~~P-~~R~~hsa~~~~~~~l~v 146 (810)
+...+..++++......+. +-...+... ..-+|+.+......| ..-.|-+++...++.|+|
T Consensus 214 ~~~~~g~~~~~~~~~~~r~-~l~l~~S~D-~g~tW~~~~~i~~~~~~~~~Y~~~~~~~dg~l~i 275 (275)
T PF13088_consen 214 VRLSDGRLLLVYNNPDGRS-NLSLYVSED-GGKTWSRPKTIDDGPNGDSGYPSLTQLPDGKLYI 275 (275)
T ss_dssp EECTTSEEEEEEECSSTSE-EEEEEEECT-TCEEEEEEEEEEEEE-CCEEEEEEEEEETTEEEE
T ss_pred EEcCCCCEEEEEECCCCCC-ceEEEEEeC-CCCcCCccEEEeCCCCCcEECCeeEEeCCCcCCC
Confidence 6655555666655321121 111222332 233887653322222 113455666667777765
No 211
>cd07382 MPP_DR1281 Deinococcus radiodurans DR1281 and related proteins, metallophosphatase domain. DR1281 is an uncharacterized Deinococcus radiodurans protein with a domain that belongs to the metallophosphatase (MPP) superfamily. MPPs are functionally diverse, but all share a conserved domain with an active site consisting of two metal ions (usually manganese, iron, or zinc) coordinated with octahedral geometry by a cage of histidine, aspartate, and asparagine residues. The MPP superfamily includes: Mre11/SbcD-like exonucleases, Dbr1-like RNA lariat debranching enzymes, YfcE-like phosphodiesterases, purple acid phosphatases (PAPs), YbbF-like UDP-2,3-diacylglucosamine hydrolases, and acid sphingomyelinases (ASMases). The conserved domain is a double beta-sheet sandwich with a di-metal active site made up of residues located at the C-terminal side of the sheets. This domain is thought to allow for productive metal coordination.
Probab=30.34 E-value=1.1e+02 Score=32.36 Aligned_cols=66 Identities=20% Similarity=0.312 Sum_probs=41.5
Q ss_pred CeEEEecCCCCHH--HHHHHHHHhCCCCCCCCcceeeEEE-eccccCCC-CChHHHHHHHHHHhhcCCCcEEEecCCccc
Q 003577 507 PVKVFGDLHGQFG--DLMRLFDEYGFPSTAGDITYIDYLF-LGDYVDRG-QHSLETITLLLALKIEYPENVHLIRGNHEA 582 (810)
Q Consensus 507 pi~vvGDiHG~~~--~L~~~l~~~~~~~~~~~~~~~~~vf-LGDyVDRG-~~s~evl~ll~~lk~~~p~~v~llrGNHE~ 582 (810)
+|.++|||=|.-. .+...+..+.-.... ++++ .||..--| .-+-++...|..+.+. +..+ ||||.
T Consensus 1 ~ilfigdi~g~~G~~~~~~~l~~lk~~~~~------D~vi~NgEn~~gg~gl~~~~~~~L~~~G~D----~iTl-GNH~f 69 (255)
T cd07382 1 KILFIGDIVGKPGRKAVKEHLPKLKKEYKI------DFVIANGENAAGGKGITPKIAKELLSAGVD----VITM-GNHTW 69 (255)
T ss_pred CEEEEEeCCCHHHHHHHHHHHHHHHHHCCC------CEEEECCccccCCCCCCHHHHHHHHhcCCC----EEEe-ccccc
Confidence 4789999999863 334445444221111 3444 79998766 3677888888777533 4444 99986
Q ss_pred c
Q 003577 583 A 583 (810)
Q Consensus 583 ~ 583 (810)
-
T Consensus 70 D 70 (255)
T cd07382 70 D 70 (255)
T ss_pred C
Confidence 3
No 212
>TIGR01530 nadN NAD pyrophosphatase/5'-nucleotidase NadN. This model describes NadN of Haemophilus influenzae and a small number of close homologs in pathogenic, Gram-negative bacteria. NadN is a periplasmic enzyme that cleaves NAD (nicotinamide adenine dinucleotide) to NMN (nicotinamide mononucleotide) and AMP. The NMN must be converted by a 5'-nucleotidase to nicotinamide riboside for import. NadN belongs a large family of 5'-nucleotidases and has NMN 5'-nucleotidase activity for NMN, AMP, etc.
Probab=29.36 E-value=96 Score=36.78 Aligned_cols=37 Identities=24% Similarity=0.089 Sum_probs=23.4
Q ss_pred eEEEeccccCCCCCh-----HHHHHHHHHHhhcCCCcEEEecCCccc
Q 003577 541 DYLFLGDYVDRGQHS-----LETITLLLALKIEYPENVHLIRGNHEA 582 (810)
Q Consensus 541 ~~vfLGDyVDRG~~s-----~evl~ll~~lk~~~p~~v~llrGNHE~ 582 (810)
-+|.-||.+..-+.+ ...+.++-++. --.+..||||.
T Consensus 52 l~ldaGD~~~gs~~~~~~~g~~~i~~~N~~g-----~Da~~lGNHEF 93 (550)
T TIGR01530 52 LVLHAGDAIIGTLYFTLFGGRADAALMNAAG-----FDFFTLGNHEF 93 (550)
T ss_pred EEEECCCCCCCccchhhcCCHHHHHHHhccC-----CCEEEeccccc
Confidence 466699998755422 23344444443 44778999996
No 213
>COG0634 Hpt Hypoxanthine-guanine phosphoribosyltransferase [Nucleotide transport and metabolism]
Probab=29.26 E-value=3.6e+02 Score=26.82 Aligned_cols=83 Identities=20% Similarity=0.235 Sum_probs=59.5
Q ss_pred ccccCHHHHHHHHHHHHHHHhcCCceEeecCCeEEEecCCCCHHHHHHHHHHhCCCCC----------------------
Q 003577 476 RFFLDSYEVGELCYAAEQIFMQEPTVLQLRAPVKVFGDLHGQFGDLMRLFDEYGFPST---------------------- 533 (810)
Q Consensus 476 ~~~~~~~~i~~l~~~~~~~~~~e~~~l~~~~pi~vvGDiHG~~~~L~~~l~~~~~~~~---------------------- 533 (810)
...+++++|.+-|.+..+.+.++-.= ...++||=++|.+--+-.++..+.++.+
T Consensus 9 evLisee~I~~ri~ela~~I~~~y~g----~~~~vv~iLkGs~~F~~dL~r~i~~~~e~dFm~vSSYg~~t~ssg~v~i~ 84 (178)
T COG0634 9 EVLISEEQIKARIKELAAQITEDYGG----KDPLVVGVLKGSFPFMADLIRAIDFPLEVDFMHVSSYGGGTSSSGEVKIL 84 (178)
T ss_pred eEeeCHHHHHHHHHHHHHHHHHhhCC----CceEEEEEcccchhhHHHHHHhcCCCceeEEEEEeccCCCcccCCceEEe
Confidence 46789999999888887777765322 5688999999999888788777766632
Q ss_pred ---CCCcceeeEEEeccccCCCCChHHHHHHH
Q 003577 534 ---AGDITYIDYLFLGDYVDRGQHSLETITLL 562 (810)
Q Consensus 534 ---~~~~~~~~~vfLGDyVDRG~~s~evl~ll 562 (810)
+.++...++|.+=|++|-|.-=-.+..+|
T Consensus 85 kDld~di~grdVLiVeDIiDsG~TLs~i~~~l 116 (178)
T COG0634 85 KDLDEDIKGRDVLIVEDIIDSGLTLSKVRDLL 116 (178)
T ss_pred cccccCCCCCeEEEEecccccChhHHHHHHHH
Confidence 11222447999999999886544444444
No 214
>KOG1446 consensus Histone H3 (Lys4) methyltransferase complex and RNA cleavage factor II complex, subunit SWD2 [RNA processing and modification; Chromatin structure and dynamics; Posttranslational modification, protein turnover, chaperones]
Probab=29.14 E-value=7.7e+02 Score=26.72 Aligned_cols=30 Identities=23% Similarity=0.303 Sum_probs=22.9
Q ss_pred eEEEEECCEEEEEcccCCCCCCCCCCceEEEEECCCCc
Q 003577 187 HAAVFVGARLHVTGGALRGGRAIEGEAAVAVLDTAAGV 224 (810)
Q Consensus 187 hsav~~~~~l~V~GG~~~~~~~~~~~~~l~~yD~~t~~ 224 (810)
-.+++..+.-||++|..++. +++|+.++..
T Consensus 236 ~~a~ftPds~Fvl~gs~dg~--------i~vw~~~tg~ 265 (311)
T KOG1446|consen 236 LSATFTPDSKFVLSGSDDGT--------IHVWNLETGK 265 (311)
T ss_pred eeEEECCCCcEEEEecCCCc--------EEEEEcCCCc
Confidence 46777777788888886544 8999998764
No 215
>PF09637 Med18: Med18 protein; InterPro: IPR019095 The Mediator complex is a coactivator involved in the regulated transcription of nearly all RNA polymerase II-dependent genes. Mediator functions as a bridge to convey information from gene-specific regulatory proteins to the basal RNA polymerase II transcription machinery. The Mediator complex, having a compact conformation in its free form, is recruited to promoters by direct interactions with regulatory proteins and serves for the assembly of a functional preinitiation complex with RNA polymerase II and the general transcription factors. On recruitment the Mediator complex unfolds to an extended conformation and partially surrounds RNA polymerase II, specifically interacting with the unphosphorylated form of the C-terminal domain (CTD) of RNA polymerase II. The Mediator complex dissociates from the RNA polymerase II holoenzyme and stays at the promoter when transcriptional elongation begins. The Mediator complex is composed of at least 31 subunits: MED1, MED4, MED6, MED7, MED8, MED9, MED10, MED11, MED12, MED13, MED13L, MED14, MED15, MED16, MED17, MED18, MED19, MED20, MED21, MED22, MED23, MED24, MED25, MED26, MED27, MED29, MED30, MED31, CCNC, CDK8 and CDC2L6/CDK11. The subunits form at least three structurally distinct submodules. The head and the middle modules interact directly with RNA polymerase II, whereas the elongated tail module interacts with gene-specific regulatory proteins. Mediator containing the CDK8 module is less active than Mediator lacking this module in supporting transcriptional activation. The head module contains: MED6, MED8, MED11, SRB4/MED17, SRB5/MED18, ROX3/MED19, SRB2/MED20 and SRB6/MED22. The middle module contains: MED1, MED4, NUT1/MED5, MED7, CSE2/MED9, NUT2/MED10, SRB7/MED21 and SOH1/MED31. CSE2/MED9 interacts directly with MED4. The tail module contains: MED2, PGD1/MED3, RGR1/MED14, GAL11/MED15 and SIN4/MED16. The CDK8 module contains: MED12, MED13, CCNC and CDK8. Individual preparations of the Mediator complex lacking one or more distinct subunits have been variously termed ARC, CRSP, DRIP, PC2, SMCC and TRAP. Med18 is one subunit of the Mediator complex and a component of the head module that is involved in stimulating basal RNA polymerase II (PolII) transcription. Med18 consists of an eight-stranded beta-barrel with a central pore and three flanking helices. It complexes with Med8 and Med20 proteins by forming a heterodimer of two-fold symmetry with Med20 and binding the C-terminal alpha-helix region of Med8 across the top of its barrel. This complex creates a multipartite TBP-binding site that can be modulated by transcriptional activators []. ; GO: 0001104 RNA polymerase II transcription cofactor activity, 0006357 regulation of transcription from RNA polymerase II promoter, 0016592 mediator complex; PDB: 2HZM_F 2HZS_H 3RJ1_E 3C0T_A.
Probab=28.29 E-value=60 Score=34.21 Aligned_cols=41 Identities=20% Similarity=0.333 Sum_probs=34.0
Q ss_pred CHHHHHHHHHhcCCcEEEEeccccccceEEecCCeEEEEEccCC
Q 003577 691 GPDRVSDFCKRNKLQLIIRAHECVMDGFERFAQGQLITLFSATN 734 (810)
Q Consensus 691 g~~~~~~fl~~~~l~~iiR~H~~~~~G~~~~~~~~~itvfSa~~ 734 (810)
....+.+||+.+|..+ .+|++.+||.|+.++=+|+||---.
T Consensus 139 ~~~~~~~fl~~lGy~~---~~Eyv~~G~~F~~g~i~I~l~ri~~ 179 (250)
T PF09637_consen 139 TSGSLLSFLNELGYRF---DYEYVVEGYRFFKGDIVIELFRIFK 179 (250)
T ss_dssp SSSSHHHHHHHTTEEE---EEEEEEEEEEEEECCEEEEEEEEEE
T ss_pred CCCCHHHHHHHcCCce---EEEEEEEEEEEEECCEEEEEEEEEe
Confidence 4566889999999876 6999999999999998888876433
No 216
>PF13570 PQQ_3: PQQ-like domain; PDB: 3HXJ_B 3Q54_A.
Probab=27.46 E-value=1.1e+02 Score=21.84 Aligned_cols=23 Identities=35% Similarity=0.524 Sum_probs=15.7
Q ss_pred EEECCEEEEECccCCCCCccCcEEEEEccC
Q 003577 31 AAVGTMVVFQGGIGPAGHSTDDLYVLDLTN 60 (810)
Q Consensus 31 ~~~~~~lyv~GG~~~~~~~~~dl~~lDl~t 60 (810)
++.++.||+.+. ...+|++|.+|
T Consensus 18 ~v~~g~vyv~~~-------dg~l~ald~~t 40 (40)
T PF13570_consen 18 AVAGGRVYVGTG-------DGNLYALDAAT 40 (40)
T ss_dssp EECTSEEEEE-T-------TSEEEEEETT-
T ss_pred EEECCEEEEEcC-------CCEEEEEeCCC
Confidence 556788888766 36789998754
No 217
>PRK09558 ushA bifunctional UDP-sugar hydrolase/5'-nucleotidase periplasmic precursor; Reviewed
Probab=26.95 E-value=81 Score=37.38 Aligned_cols=18 Identities=17% Similarity=0.342 Sum_probs=13.4
Q ss_pred HHHHhc---CCcEEEEecccc
Q 003577 697 DFCKRN---KLQLIIRAHECV 714 (810)
Q Consensus 697 ~fl~~~---~l~~iiR~H~~~ 714 (810)
++.++. ++++||=||+-.
T Consensus 236 ~la~~~~~~~IDvIlgGHsH~ 256 (551)
T PRK09558 236 EMARSLPAGGLDMIVGGHSQD 256 (551)
T ss_pred HHHHhCCccCceEEEeCCCCc
Confidence 455555 799999999863
No 218
>PRK11907 bifunctional 2',3'-cyclic nucleotide 2'-phosphodiesterase/3'-nucleotidase precursor protein; Reviewed
Probab=26.46 E-value=1e+02 Score=38.31 Aligned_cols=67 Identities=21% Similarity=0.113 Sum_probs=38.6
Q ss_pred CCeEEEecCCCCHHHH----------------HHHHHHhCCCCCCCCcceeeEEEeccccCCCCCh--------------
Q 003577 506 APVKVFGDLHGQFGDL----------------MRLFDEYGFPSTAGDITYIDYLFLGDYVDRGQHS-------------- 555 (810)
Q Consensus 506 ~pi~vvGDiHG~~~~L----------------~~~l~~~~~~~~~~~~~~~~~vfLGDyVDRG~~s-------------- 555 (810)
-.|+-..|+||++... ..+++...-.. ...-+|..||++..-+.+
T Consensus 116 LtIL~TnDiHg~l~~~dy~~~~~~~~~GlaRlAtlI~~~Rae~-----~NtLllD~GD~iQGSpl~~~~a~~~~~~~g~~ 190 (814)
T PRK11907 116 VRILSTTDLHTNLVNYDYYQDKPSQTLGLAKTAVLIEEAKKEN-----PNVVLVDNGDTIQGTPLGTYKAIVDPVEEGEQ 190 (814)
T ss_pred EEEEEEEeecCCcccccccccCccccccHHHHHHHHHHHHHhC-----CCEEEEecCCCCCCCcccchhhhccccccCcc
Confidence 3488899999996432 22233321110 112456699999754432
Q ss_pred HHHHHHHHHHhhcCCCcEEEecCCccc
Q 003577 556 LETITLLLALKIEYPENVHLIRGNHEA 582 (810)
Q Consensus 556 ~evl~ll~~lk~~~p~~v~llrGNHE~ 582 (810)
.-++.+|-.|. .-....||||.
T Consensus 191 ~P~i~amN~LG-----yDA~tLGNHEF 212 (814)
T PRK11907 191 HPMYAALEALG-----FDAGTLGNHEF 212 (814)
T ss_pred hHHHHHHhccC-----CCEEEechhhc
Confidence 12555555553 44678899996
No 219
>TIGR00282 metallophosphoesterase, MG_246/BB_0505 family. A member of this family from Mycoplasma Pneumoniae has been crystallized and described as a novel phosphatase.
Probab=26.44 E-value=77 Score=33.75 Aligned_cols=39 Identities=28% Similarity=0.534 Sum_probs=26.6
Q ss_pred eEEEeccccCCCCChHHHH-HHHHHHhhcCCCcEEEecCCcccc
Q 003577 541 DYLFLGDYVDRGQHSLETI-TLLLALKIEYPENVHLIRGNHEAA 583 (810)
Q Consensus 541 ~~vfLGDyVDRG~~s~evl-~ll~~lk~~~p~~v~llrGNHE~~ 583 (810)
+++|+||+| |.-..+.| ..|-.||.+++-.+ +-.|=|..
T Consensus 2 ~ilfiGDi~--G~~Gr~~l~~~L~~lk~~~~~D~--vIaNgEn~ 41 (266)
T TIGR00282 2 KFLFIGDVY--GKAGRKIVKNNLPQLKSKYQADL--VIANGENT 41 (266)
T ss_pred eEEEEEecC--CHHHHHHHHHHHHHHHHhCCCCE--EEEcCccc
Confidence 799999999 55555555 56677888876544 44566654
No 220
>PRK13684 Ycf48-like protein; Provisional
Probab=26.18 E-value=8.9e+02 Score=26.50 Aligned_cols=163 Identities=15% Similarity=0.203 Sum_probs=73.6
Q ss_pred EEecCCCcEEEecCCCCCCcccc-ccEEEEECCEEEEECccCCCCCccCcEEEEEccCCceEEEEEeecCCCCCcccccE
Q 003577 4 SLENGPAGVCRIRPAGEPPSPRA-AHAAAAVGTMVVFQGGIGPAGHSTDDLYVLDLTNDKFKWHRVVVQGQGPGPRYGHV 82 (810)
Q Consensus 4 ~~~~~t~~W~~l~~~g~~P~~R~-~haa~~~~~~lyv~GG~~~~~~~~~dl~~lDl~t~~~~W~~v~~~g~~P~~R~~Hs 82 (810)
.-...-.+|+++... .|.... -.+....++..++.|.. .-+ |-..+.-.+|.++...-..|...+ .
T Consensus 70 ~T~DgG~tW~~~~~~--~~~~~~~l~~v~~~~~~~~~~G~~-------g~i--~~S~DgG~tW~~~~~~~~~~~~~~--~ 136 (334)
T PRK13684 70 ETNDGGETWEERSLD--LPEENFRLISISFKGDEGWIVGQP-------SLL--LHTTDGGKNWTRIPLSEKLPGSPY--L 136 (334)
T ss_pred EEcCCCCCceECccC--CcccccceeeeEEcCCcEEEeCCC-------ceE--EEECCCCCCCeEccCCcCCCCCce--E
Confidence 333456789987432 121211 11222234455655432 112 223333346998763212333222 2
Q ss_pred EEEECCcEEEEEccCCCCCCCCcEEEEecCCCCcEEEEecCCCCCCCcccceEEEEeCCcEEEEEcccCCCCCccccEEE
Q 003577 83 MDLVSQRYLVSVSGNDGKRVLSDAWALDTAQKPYVWQRLNPEGDRPSARMYATASARSDGMFLLCGGRDASGAPLADAYG 162 (810)
Q Consensus 83 ~~~v~~~~l~VfGG~~g~~~~ndv~~yd~~~~~~~W~~i~~~g~~P~~R~~hsa~~~~~~~l~v~GG~~~~g~~l~d~~~ 162 (810)
...++...+++.|.. ..+++=+-.-+ +|+++... ..-..+.+....++.+++.|... .++.
T Consensus 137 i~~~~~~~~~~~g~~------G~i~~S~DgG~--tW~~~~~~----~~g~~~~i~~~~~g~~v~~g~~G-------~i~~ 197 (334)
T PRK13684 137 ITALGPGTAEMATNV------GAIYRTTDGGK--NWEALVED----AAGVVRNLRRSPDGKYVAVSSRG-------NFYS 197 (334)
T ss_pred EEEECCCcceeeecc------ceEEEECCCCC--CceeCcCC----CcceEEEEEECCCCeEEEEeCCc-------eEEE
Confidence 334444445555432 22443322334 89987542 12234455555667666655432 1222
Q ss_pred EEeCCCCeEEEEeCCCCCCCcccceEEEEE-CCEEEEEccc
Q 003577 163 LLMHRNGQWEWTLAPGVAPSPRYQHAAVFV-GARLHVTGGA 202 (810)
Q Consensus 163 l~~~~~~~W~~~~~~g~~P~~R~~hsav~~-~~~l~V~GG~ 202 (810)
..+....+|+..... ..+.-+++++. ++.++++|..
T Consensus 198 s~~~gg~tW~~~~~~----~~~~l~~i~~~~~g~~~~vg~~ 234 (334)
T PRK13684 198 TWEPGQTAWTPHQRN----SSRRLQSMGFQPDGNLWMLARG 234 (334)
T ss_pred EcCCCCCeEEEeeCC----CcccceeeeEcCCCCEEEEecC
Confidence 211222368776432 23444455444 5678887643
No 221
>PF13088 BNR_2: BNR repeat-like domain; PDB: 2F11_A 2F0Z_A 1VCU_B 2F25_B 1SO7_A 2F29_A 1SNT_A 2F13_A 2F28_A 2F27_A ....
Probab=26.03 E-value=7.5e+02 Score=25.62 Aligned_cols=209 Identities=15% Similarity=0.175 Sum_probs=93.4
Q ss_pred CCCcEEEecCCCCCC--ccccccEEEEE--CCEEEEEC--ccCCCCCccCcE-EEEEccCCceEEEEEeec--C---CCC
Q 003577 8 GPAGVCRIRPAGEPP--SPRAAHAAAAV--GTMVVFQG--GIGPAGHSTDDL-YVLDLTNDKFKWHRVVVQ--G---QGP 75 (810)
Q Consensus 8 ~t~~W~~l~~~g~~P--~~R~~haa~~~--~~~lyv~G--G~~~~~~~~~dl-~~lDl~t~~~~W~~v~~~--g---~~P 75 (810)
...+|+......+.+ ..+.+..+..+ ++.|+++- +..........+ +..... +-.+|+..... + ..+
T Consensus 28 ~G~tWs~~~~v~~~~~~~~~~~~p~~~~~~~g~l~l~~~~~~~~~~~~~~~~~~~~S~D-~G~TWs~~~~l~~~~~~~~~ 106 (275)
T PF13088_consen 28 GGKTWSEPRIVADGPKPGRRYGNPSLVVDPDGRLWLFYSAGSSGGGWSGSRIYYSRSTD-GGKTWSEPTDLPPGWFGNFS 106 (275)
T ss_dssp CTTEEEEEEEEETSTBTTCEEEEEEEEEETTSEEEEEEEEEETTESCCTCEEEEEEESS-TTSS-EEEEEEHHHCCCSCE
T ss_pred CCCeeCCCEEEeeccccCCcccCcEEEEeCCCCEEEEEEEccCCCCCCceeEEEEEECC-CCCCCCCcccccccccccee
Confidence 557898865433333 33444444444 56777765 222111111122 233322 23569876431 1 111
Q ss_pred CcccccEEEEECCcEEEEEccCCC-CCCCCcEEEEecCCCCcEEEEecCCCCCCCcccceEEE-EeCCcEEEEEcccCCC
Q 003577 76 GPRYGHVMDLVSQRYLVSVSGNDG-KRVLSDAWALDTAQKPYVWQRLNPEGDRPSARMYATAS-ARSDGMFLLCGGRDAS 153 (810)
Q Consensus 76 ~~R~~Hs~~~v~~~~l~VfGG~~g-~~~~ndv~~yd~~~~~~~W~~i~~~g~~P~~R~~hsa~-~~~~~~l~v~GG~~~~ 153 (810)
.+-.++.+ .+.++.+++. .+.. .........+..+.. -+|+...... +.....+.+. ...++.++++--....
T Consensus 107 ~~~~~~~i-~~~~G~l~~~-~~~~~~~~~~~~~~~S~D~G-~tW~~~~~~~--~~~~~~e~~~~~~~dG~l~~~~R~~~~ 181 (275)
T PF13088_consen 107 GPGRGPPI-QLPDGRLIAP-YYHESGGSFSAFVYYSDDGG-KTWSSGSPIP--DGQGECEPSIVELPDGRLLAVFRTEGN 181 (275)
T ss_dssp ECSEEEEE-EECTTEEEEE-EEEESSCEEEEEEEEESSTT-SSEEEEEECE--CSEEEEEEEEEEETTSEEEEEEEECSS
T ss_pred ccceeeee-EecCCCEEEE-EeeccccCcceEEEEeCCCC-ceeecccccc--ccCCcceeEEEECCCCcEEEEEEccCC
Confidence 22222223 3344446554 2111 111222333444332 3698775532 2223333443 3467777776543211
Q ss_pred CCccccEEEEEeCC-CCeEEEEeCCCCCCCcccceEEEEE-CCEEEEEcccCCCCCCCCCCceEEEEECCCCcEEEcccC
Q 003577 154 GAPLADAYGLLMHR-NGQWEWTLAPGVAPSPRYQHAAVFV-GARLHVTGGALRGGRAIEGEAAVAVLDTAAGVWLDRNGL 231 (810)
Q Consensus 154 g~~l~d~~~l~~~~-~~~W~~~~~~g~~P~~R~~hsav~~-~~~l~V~GG~~~~~~~~~~~~~l~~yD~~t~~W~~v~~~ 231 (810)
. ..+...-.. -.+|+...... .|.+.....++.. +++++++....... ....+++-.-...+|.....+
T Consensus 182 -~---~~~~~~S~D~G~TWs~~~~~~-~~~~~~~~~~~~~~~g~~~~~~~~~~~r----~~l~l~~S~D~g~tW~~~~~i 252 (275)
T PF13088_consen 182 -D---DIYISRSTDGGRTWSPPQPTN-LPNPNSSISLVRLSDGRLLLVYNNPDGR----SNLSLYVSEDGGKTWSRPKTI 252 (275)
T ss_dssp -T---EEEEEEESSTTSS-EEEEEEE-CSSCCEEEEEEECTTSEEEEEEECSSTS----EEEEEEEECTTCEEEEEEEEE
T ss_pred -C---cEEEEEECCCCCcCCCceecc-cCcccCCceEEEcCCCCEEEEEECCCCC----CceEEEEEeCCCCcCCccEEE
Confidence 1 444444443 33788765332 2445544444443 56777776622111 122244444457789876655
No 222
>PRK04792 tolB translocation protein TolB; Provisional
Probab=25.99 E-value=1e+03 Score=27.18 Aligned_cols=147 Identities=17% Similarity=0.214 Sum_probs=72.4
Q ss_pred CcEEEEEccCCceEEEEEeecCCCCCcccccEEEEE-CCcEEEEEccCCCCCCCCcEEEEecCCCCcEEEEecCCCCCCC
Q 003577 51 DDLYVLDLTNDKFKWHRVVVQGQGPGPRYGHVMDLV-SQRYLVSVSGNDGKRVLSDAWALDTAQKPYVWQRLNPEGDRPS 129 (810)
Q Consensus 51 ~dl~~lDl~t~~~~W~~v~~~g~~P~~R~~Hs~~~v-~~~~l~VfGG~~g~~~~ndv~~yd~~~~~~~W~~i~~~g~~P~ 129 (810)
..+|++|+.+.+ -..+.. .+..-. ..... +++.+++....++ ..++|.+|+.++ +.+++......
T Consensus 242 ~~L~~~dl~tg~--~~~lt~---~~g~~~--~~~wSPDG~~La~~~~~~g---~~~Iy~~dl~tg--~~~~lt~~~~~-- 307 (448)
T PRK04792 242 AEIFVQDIYTQV--REKVTS---FPGING--APRFSPDGKKLALVLSKDG---QPEIYVVDIATK--ALTRITRHRAI-- 307 (448)
T ss_pred cEEEEEECCCCC--eEEecC---CCCCcC--CeeECCCCCEEEEEEeCCC---CeEEEEEECCCC--CeEECccCCCC--
Confidence 579999998744 334332 221111 22222 3344544433332 257999999888 77776542111
Q ss_pred cccceEEEEeCCc-EEEEEcccCCCCCccccEEEEEeCCCCeEEEEeCCCCCCCcccceEEEEECCEEEEEcccCCCCCC
Q 003577 130 ARMYATASARSDG-MFLLCGGRDASGAPLADAYGLLMHRNGQWEWTLAPGVAPSPRYQHAAVFVGARLHVTGGALRGGRA 208 (810)
Q Consensus 130 ~R~~hsa~~~~~~-~l~v~GG~~~~g~~l~d~~~l~~~~~~~W~~~~~~g~~P~~R~~hsav~~~~~l~V~GG~~~~~~~ 208 (810)
........++ .+++...+.. ..++|.++.. +++++.+...+.. ....+..-+++.+++.+...
T Consensus 308 ---~~~p~wSpDG~~I~f~s~~~g----~~~Iy~~dl~-~g~~~~Lt~~g~~----~~~~~~SpDG~~l~~~~~~~---- 371 (448)
T PRK04792 308 ---DTEPSWHPDGKSLIFTSERGG----KPQIYRVNLA-SGKVSRLTFEGEQ----NLGGSITPDGRSMIMVNRTN---- 371 (448)
T ss_pred ---ccceEECCCCCEEEEEECCCC----CceEEEEECC-CCCEEEEecCCCC----CcCeeECCCCCEEEEEEecC----
Confidence 1112223344 3444332222 2467777764 4566665433221 11112233555444543322
Q ss_pred CCCCceEEEEECCCCcEEEcc
Q 003577 209 IEGEAAVAVLDTAAGVWLDRN 229 (810)
Q Consensus 209 ~~~~~~l~~yD~~t~~W~~v~ 229 (810)
....++++|+.+...+.+.
T Consensus 372 --g~~~I~~~dl~~g~~~~lt 390 (448)
T PRK04792 372 --GKFNIARQDLETGAMQVLT 390 (448)
T ss_pred --CceEEEEEECCCCCeEEcc
Confidence 1235899999988876654
No 223
>PTZ00422 glideosome-associated protein 50; Provisional
Probab=25.52 E-value=84 Score=35.39 Aligned_cols=22 Identities=18% Similarity=0.191 Sum_probs=19.2
Q ss_pred HHHHHHHhcCCcEEEEeccccc
Q 003577 694 RVSDFCKRNKLQLIIRAHECVM 715 (810)
Q Consensus 694 ~~~~fl~~~~l~~iiR~H~~~~ 715 (810)
.++-.|+++++++.|-||+-..
T Consensus 239 ~L~PLL~ky~VdlYisGHDH~l 260 (394)
T PTZ00422 239 YLLPLLKDAQVDLYISGYDRNM 260 (394)
T ss_pred HHHHHHHHcCcCEEEEccccce
Confidence 6788999999999999998643
No 224
>KOG4649 consensus PQQ (pyrrolo-quinoline quinone) repeat protein [Secondary metabolites biosynthesis, transport and catabolism]
Probab=25.36 E-value=8.4e+02 Score=25.96 Aligned_cols=60 Identities=15% Similarity=0.297 Sum_probs=44.4
Q ss_pred cCcEEEEEccCCceEEEEEeecCCCCCcccccEEEEECCcEEEEEccCCCCCCCCcEEEEecCCCCcEEEEec
Q 003577 50 TDDLYVLDLTNDKFKWHRVVVQGQGPGPRYGHVMDLVSQRYLVSVSGNDGKRVLSDAWALDTAQKPYVWQRLN 122 (810)
Q Consensus 50 ~~dl~~lDl~t~~~~W~~v~~~g~~P~~R~~Hs~~~v~~~~l~VfGG~~g~~~~ndv~~yd~~~~~~~W~~i~ 122 (810)
+..+-..|..+.+..|..+. +.|..-+++++++ .+|.|-+.+. +|.++..+..--|.-..
T Consensus 32 s~~~~avd~~sG~~~We~il------g~RiE~sa~vvgd--fVV~GCy~g~-----lYfl~~~tGs~~w~f~~ 91 (354)
T KOG4649|consen 32 SGIVIAVDPQSGNLIWEAIL------GVRIECSAIVVGD--FVVLGCYSGG-----LYFLCVKTGSQIWNFVI 91 (354)
T ss_pred CceEEEecCCCCcEEeehhh------CceeeeeeEEECC--EEEEEEccCc-----EEEEEecchhheeeeee
Confidence 45678889999889998754 5688888888886 4777877654 77788877765776653
No 225
>KOG3947 consensus Phosphoesterases [General function prediction only]
Probab=25.30 E-value=96 Score=32.90 Aligned_cols=63 Identities=27% Similarity=0.295 Sum_probs=39.4
Q ss_pred CeEEEecCCCCHHHHHHHHHHhCCCCCCCCcceeeEEEeccccCCCCChHHHHHH---HHHHhhcCCCcEEEecCCcccc
Q 003577 507 PVKVFGDLHGQFGDLMRLFDEYGFPSTAGDITYIDYLFLGDYVDRGQHSLETITL---LLALKIEYPENVHLIRGNHEAA 583 (810)
Q Consensus 507 pi~vvGDiHG~~~~L~~~l~~~~~~~~~~~~~~~~~vfLGDyVDRG~~s~evl~l---l~~lk~~~p~~v~llrGNHE~~ 583 (810)
.++.|+|.|....+.. ..|+.+ -++-+||+-.-|. +-||+.+ +-+|.-+ +=+.|+||||.-
T Consensus 63 r~VcisdtH~~~~~i~------~~p~gD------vlihagdfT~~g~-~~ev~~fn~~~gslph~---yKIVIaGNHELt 126 (305)
T KOG3947|consen 63 RFVCISDTHELTFDIN------DIPDGD------VLIHAGDFTNLGL-PEEVIKFNEWLGSLPHE---YKIVIAGNHELT 126 (305)
T ss_pred EEEEecCcccccCccc------cCCCCc------eEEeccCCccccC-HHHHHhhhHHhccCcce---eeEEEeecccee
Confidence 4899999998765543 233322 3566999977654 3455533 3333322 347899999985
Q ss_pred ch
Q 003577 584 DI 585 (810)
Q Consensus 584 ~~ 585 (810)
.-
T Consensus 127 Fd 128 (305)
T KOG3947|consen 127 FD 128 (305)
T ss_pred ec
Confidence 43
No 226
>KOG0649 consensus WD40 repeat protein [General function prediction only]
Probab=24.00 E-value=8.6e+02 Score=25.60 Aligned_cols=63 Identities=22% Similarity=0.329 Sum_probs=38.5
Q ss_pred CCEEEEECccCCCCCccCcEEEEEccCCceEEEEEeecCCCCCcccccEEEEECCcEEEEEccCCCCCCCCcEEEEecCC
Q 003577 34 GTMVVFQGGIGPAGHSTDDLYVLDLTNDKFKWHRVVVQGQGPGPRYGHVMDLVSQRYLVSVSGNDGKRVLSDAWALDTAQ 113 (810)
Q Consensus 34 ~~~lyv~GG~~~~~~~~~dl~~lDl~t~~~~W~~v~~~g~~P~~R~~Hs~~~v~~~~l~VfGG~~g~~~~ndv~~yd~~~ 113 (810)
++.|++.||- ..+|+.|+++.+ -.+..- | -.-|-|+.+.-+..-=++-|+.||. +-++|+.+
T Consensus 126 enSi~~AgGD-------~~~y~~dlE~G~--i~r~~r-G---HtDYvH~vv~R~~~~qilsG~EDGt-----vRvWd~kt 187 (325)
T KOG0649|consen 126 ENSILFAGGD-------GVIYQVDLEDGR--IQREYR-G---HTDYVHSVVGRNANGQILSGAEDGT-----VRVWDTKT 187 (325)
T ss_pred CCcEEEecCC-------eEEEEEEecCCE--EEEEEc-C---CcceeeeeeecccCcceeecCCCcc-----EEEEeccc
Confidence 5789888874 458999999854 444331 1 1236666655332224456777764 55677766
Q ss_pred C
Q 003577 114 K 114 (810)
Q Consensus 114 ~ 114 (810)
.
T Consensus 188 ~ 188 (325)
T KOG0649|consen 188 Q 188 (325)
T ss_pred c
Confidence 6
No 227
>TIGR02658 TTQ_MADH_Hv methylamine dehydrogenase heavy chain. This family consists of the heavy chain of methylamine dehydrogenase light chain, a periplasmic enzyme. The enzyme contains a tryptophan tryptophylquinone (TTQ) prothetic group derived from two Trp residues in the light subunity. The enzyme forms a complex with the type I blue copper protein amicyanin and a cytochrome. Electron transfer procedes from TQQ to the copper and then to the heme group of the cytochrome.
Probab=23.78 E-value=1e+03 Score=26.43 Aligned_cols=101 Identities=18% Similarity=0.240 Sum_probs=54.6
Q ss_pred eEEEecCCCcEEEecCCCCCCccccccEEEEECCEEEEECccC---CCCCccCcEEEEEccCCceEEEEEeecCCCCCcc
Q 003577 2 MFSLENGPAGVCRIRPAGEPPSPRAAHAAAAVGTMVVFQGGIG---PAGHSTDDLYVLDLTNDKFKWHRVVVQGQGPGPR 78 (810)
Q Consensus 2 l~~~~~~t~~W~~l~~~g~~P~~R~~haa~~~~~~lyv~GG~~---~~~~~~~dl~~lDl~t~~~~W~~v~~~g~~P~~R 78 (810)
++.+|..+++-...-+.|..|. +...--++.+|+.-.+- ..+...+.+-++|..+.+.... ++. ++.||
T Consensus 29 v~ViD~~~~~v~g~i~~G~~P~----~~~spDg~~lyva~~~~~R~~~G~~~d~V~v~D~~t~~~~~~-i~~---p~~p~ 100 (352)
T TIGR02658 29 VYTIDGEAGRVLGMTDGGFLPN----PVVASDGSFFAHASTVYSRIARGKRTDYVEVIDPQTHLPIAD-IEL---PEGPR 100 (352)
T ss_pred EEEEECCCCEEEEEEEccCCCc----eeECCCCCEEEEEeccccccccCCCCCEEEEEECccCcEEeE-Ecc---CCCch
Confidence 4566766655544334443332 22333356888877732 3345678899999998542222 221 34444
Q ss_pred -----cccEEEEE-CCcEEEEEccCCCCCCCCcEEEEecCCC
Q 003577 79 -----YGHVMDLV-SQRYLVSVSGNDGKRVLSDAWALDTAQK 114 (810)
Q Consensus 79 -----~~Hs~~~v-~~~~l~VfGG~~g~~~~ndv~~yd~~~~ 114 (810)
+-+...+- +++.+||+- ...-+.+-++|+.+.
T Consensus 101 ~~~~~~~~~~~ls~dgk~l~V~n----~~p~~~V~VvD~~~~ 138 (352)
T TIGR02658 101 FLVGTYPWMTSLTPDNKTLLFYQ----FSPSPAVGVVDLEGK 138 (352)
T ss_pred hhccCccceEEECCCCCEEEEec----CCCCCEEEEEECCCC
Confidence 22233232 456677752 122456778888776
No 228
>KOG2111 consensus Uncharacterized conserved protein, contains WD40 repeats [Function unknown]
Probab=23.07 E-value=1e+03 Score=26.04 Aligned_cols=23 Identities=13% Similarity=0.281 Sum_probs=16.7
Q ss_pred CEEEEECccCCCCCccCcEEEEE
Q 003577 35 TMVVFQGGIGPAGHSTDDLYVLD 57 (810)
Q Consensus 35 ~~lyv~GG~~~~~~~~~dl~~lD 57 (810)
|.+-+.||-+....+.|.+.+||
T Consensus 59 N~laLVGGg~~pky~pNkviIWD 81 (346)
T KOG2111|consen 59 NYLALVGGGSRPKYPPNKVIIWD 81 (346)
T ss_pred ceEEEecCCCCCCCCCceEEEEe
Confidence 56666776654556788899998
No 229
>COG5184 ATS1 Alpha-tubulin suppressor and related RCC1 domain-containing proteins [Cell division and chromosome partitioning / Cytoskeleton]
Probab=23.07 E-value=1.2e+03 Score=26.98 Aligned_cols=27 Identities=26% Similarity=0.233 Sum_probs=18.6
Q ss_pred ccEEEEECCcEEEEEccCCCCCCCCcE
Q 003577 80 GHVMDLVSQRYLVSVSGNDGKRVLSDA 106 (810)
Q Consensus 80 ~Hs~~~v~~~~l~VfGG~~g~~~~ndv 106 (810)
.|+.+...+..+|..|-++......+.
T Consensus 114 ~hsl~ld~Dg~lyswG~N~~G~Lgr~~ 140 (476)
T COG5184 114 NHSLGLDHDGNLYSWGDNDDGALGRDI 140 (476)
T ss_pred ceEEeecCCCCEEEeccCccccccccc
Confidence 388877777789999966544443333
No 230
>KOG3339 consensus Predicted glycosyltransferase [General function prediction only]
Probab=22.97 E-value=1.8e+02 Score=29.05 Aligned_cols=89 Identities=22% Similarity=0.298 Sum_probs=58.9
Q ss_pred eeEEEeccccCCCCChHHHHHHHHHHhhcCCCcEEEecCCccccchhhccCChH---HHHHhh---------CCCCcccc
Q 003577 540 IDYLFLGDYVDRGQHSLETITLLLALKIEYPENVHLIRGNHEAADINALFGFRL---ECIERM---------GENDGIWA 607 (810)
Q Consensus 540 ~~~vfLGDyVDRG~~s~evl~ll~~lk~~~p~~v~llrGNHE~~~~~~~~gf~~---e~~~~~---------~~~~~~~~ 607 (810)
..+|||| .|-+.-|.+.||-+|+.+|-.+.++ -|+-|.|..++...|.. +|..++ +...-...
T Consensus 40 ~~lVvlG----SGGHT~EMlrLl~~l~~~y~~r~yI-~a~tD~mS~~k~~~F~~~~a~~~a~~~~ipRsReVgQS~ltSv 114 (211)
T KOG3339|consen 40 STLVVLG----SGGHTGEMLRLLEALQDLYSPRSYI-AADTDEMSEQKARSFELSLAHCKAKNYEIPRSREVGQSWLTSV 114 (211)
T ss_pred eEEEEEc----CCCcHHHHHHHHHHHHhhcCceEEE-EecCchhhHHHHHhhhccccccchhheecchhhhhhhhhhhhH
Confidence 3689998 5889999999999999999766655 89999988776554431 111111 11112234
Q ss_pred ccccccccccCceeEEEcCcEEEecC
Q 003577 608 WTRFNQLFNCLPLAALIEKKIICMHG 633 (810)
Q Consensus 608 ~~~~~~~f~~lPla~~i~~~il~vHg 633 (810)
|..+....-.+++...+-.+++.+-|
T Consensus 115 ~Tti~all~s~~lv~RirPdlil~NG 140 (211)
T KOG3339|consen 115 FTTIWALLQSFVLVWRIRPDLILCNG 140 (211)
T ss_pred HHHHHHHHHHheEEEecCCCEEEECC
Confidence 45566666666777777666666666
No 231
>PF12641 Flavodoxin_3: Flavodoxin domain
Probab=21.56 E-value=3.2e+02 Score=26.69 Aligned_cols=33 Identities=33% Similarity=0.566 Sum_probs=27.8
Q ss_pred eeEEEeccccCCCCChHHHHHHHHHHhhcCCCcEEE
Q 003577 540 IDYLFLGDYVDRGQHSLETITLLLALKIEYPENVHL 575 (810)
Q Consensus 540 ~~~vfLGDyVDRG~~s~evl~ll~~lk~~~p~~v~l 575 (810)
-++||||=.||+|...-++..+|-.|+ +.+|++
T Consensus 40 yD~i~lG~w~d~G~~d~~~~~fl~~l~---~KkV~l 72 (160)
T PF12641_consen 40 YDLIFLGFWIDKGTPDKDMKEFLKKLK---GKKVAL 72 (160)
T ss_pred CCEEEEEcCccCCCCCHHHHHHHHHcc---CCeEEE
Confidence 389999999999999999999998875 345555
No 232
>PRK01742 tolB translocation protein TolB; Provisional
Probab=21.53 E-value=1.2e+03 Score=26.34 Aligned_cols=140 Identities=16% Similarity=0.126 Sum_probs=63.9
Q ss_pred CcEEEEEccCCceEEEEEeecCCCCCcccccEEEEECCcEEEEEcc-CCCCCCCCcEEEEecCCCCcEEEEecCCCCCCC
Q 003577 51 DDLYVLDLTNDKFKWHRVVVQGQGPGPRYGHVMDLVSQRYLVSVSG-NDGKRVLSDAWALDTAQKPYVWQRLNPEGDRPS 129 (810)
Q Consensus 51 ~dl~~lDl~t~~~~W~~v~~~g~~P~~R~~Hs~~~v~~~~l~VfGG-~~g~~~~ndv~~yd~~~~~~~W~~i~~~g~~P~ 129 (810)
..+|++|+.+.+ -..+.. .+. .......-.++..++++. .++. .++|.+|+.+. ..+++.....
T Consensus 228 ~~i~i~dl~tg~--~~~l~~---~~g--~~~~~~wSPDG~~La~~~~~~g~---~~Iy~~d~~~~--~~~~lt~~~~--- 292 (429)
T PRK01742 228 SQLVVHDLRSGA--RKVVAS---FRG--HNGAPAFSPDGSRLAFASSKDGV---LNIYVMGANGG--TPSQLTSGAG--- 292 (429)
T ss_pred cEEEEEeCCCCc--eEEEec---CCC--ccCceeECCCCCEEEEEEecCCc---EEEEEEECCCC--CeEeeccCCC---
Confidence 468999988743 333332 121 111222222333344443 3332 36899999777 5666543111
Q ss_pred cccceEEEEeCCcEEEEEc-ccCCCCCccccEEEEEeCCCCeEEEEeCCCCCCCcccceEEEEECCEEEEEcccCCCCCC
Q 003577 130 ARMYATASARSDGMFLLCG-GRDASGAPLADAYGLLMHRNGQWEWTLAPGVAPSPRYQHAAVFVGARLHVTGGALRGGRA 208 (810)
Q Consensus 130 ~R~~hsa~~~~~~~l~v~G-G~~~~g~~l~d~~~l~~~~~~~W~~~~~~g~~P~~R~~hsav~~~~~l~V~GG~~~~~~~ 208 (810)
.........++..++|. .++. ..++|.++.... .-..+ ... . + .....-+++.+++.+.
T Consensus 293 --~~~~~~wSpDG~~i~f~s~~~g----~~~I~~~~~~~~-~~~~l--~~~---~-~-~~~~SpDG~~ia~~~~------ 352 (429)
T PRK01742 293 --NNTEPSWSPDGQSILFTSDRSG----SPQVYRMSASGG-GASLV--GGR---G-Y-SAQISADGKTLVMING------ 352 (429)
T ss_pred --CcCCEEECCCCCEEEEEECCCC----CceEEEEECCCC-CeEEe--cCC---C-C-CccCCCCCCEEEEEcC------
Confidence 11122333454434443 2222 136676665422 11222 111 1 1 1122224444444432
Q ss_pred CCCCceEEEEECCCCcEEEcc
Q 003577 209 IEGEAAVAVLDTAAGVWLDRN 229 (810)
Q Consensus 209 ~~~~~~l~~yD~~t~~W~~v~ 229 (810)
..++++|+.+..+..+.
T Consensus 353 ----~~i~~~Dl~~g~~~~lt 369 (429)
T PRK01742 353 ----DNVVKQDLTSGSTEVLS 369 (429)
T ss_pred ----CCEEEEECCCCCeEEec
Confidence 12788999998887654
No 233
>KOG0310 consensus Conserved WD40 repeat-containing protein [Function unknown]
Probab=20.22 E-value=1.3e+03 Score=26.44 Aligned_cols=131 Identities=18% Similarity=0.173 Sum_probs=65.4
Q ss_pred CcEEEEEccCCCCCCCCcEEEEecCCCCcEEEEecCCCCCCCcccceEEEEeCC-cEEEEEcccCCCCCccccEEEEEeC
Q 003577 88 QRYLVSVSGNDGKRVLSDAWALDTAQKPYVWQRLNPEGDRPSARMYATASARSD-GMFLLCGGRDASGAPLADAYGLLMH 166 (810)
Q Consensus 88 ~~~l~VfGG~~g~~~~ndv~~yd~~~~~~~W~~i~~~g~~P~~R~~hsa~~~~~-~~l~v~GG~~~~g~~l~d~~~l~~~ 166 (810)
++.+++-||||+. +-.||+.+.+ .|.. +.....|..+ ...... ..+.-.||-.- -
T Consensus 165 ~~hivvtGsYDg~-----vrl~DtR~~~-~~v~-elnhg~pVe~----vl~lpsgs~iasAgGn~v------k------- 220 (487)
T KOG0310|consen 165 NDHIVVTGSYDGK-----VRLWDTRSLT-SRVV-ELNHGCPVES----VLALPSGSLIASAGGNSV------K------- 220 (487)
T ss_pred CCeEEEecCCCce-----EEEEEeccCC-ceeE-EecCCCceee----EEEcCCCCEEEEcCCCeE------E-------
Confidence 4569999999987 4456776553 3432 2222333332 233444 54555565321 1
Q ss_pred CCCeEEEEeCCCCCCCcccce-EEEE----E-CCEEEEEcccCCCCCCCCCCceEEEEECCCCcEEEcccCccCCCCCCC
Q 003577 167 RNGQWEWTLAPGVAPSPRYQH-AAVF----V-GARLHVTGGALRGGRAIEGEAAVAVLDTAAGVWLDRNGLVTSSRTSKG 240 (810)
Q Consensus 167 ~~~~W~~~~~~g~~P~~R~~h-sav~----~-~~~l~V~GG~~~~~~~~~~~~~l~~yD~~t~~W~~v~~~~~~~~~~~~ 240 (810)
.|+-+.. +..+.-+..| .+++ . ++.-++.||.... +-+||+ ..|.-+....-
T Consensus 221 ---VWDl~~G-~qll~~~~~H~KtVTcL~l~s~~~rLlS~sLD~~---------VKVfd~--t~~Kvv~s~~~------- 278 (487)
T KOG0310|consen 221 ---VWDLTTG-GQLLTSMFNHNKTVTCLRLASDSTRLLSGSLDRH---------VKVFDT--TNYKVVHSWKY------- 278 (487)
T ss_pred ---EEEecCC-ceehhhhhcccceEEEEEeecCCceEeecccccc---------eEEEEc--cceEEEEeeec-------
Confidence 2332211 2223344434 2222 2 3466777776542 778984 34554443311
Q ss_pred CCCCCCCCCCCcceeeEEEEeCCEEEEEcCCCCC
Q 003577 241 HGEHDPSLELMRRCRHASASIGVRIYIYGGLKGD 274 (810)
Q Consensus 241 ~~~~~~~~~p~~R~~hs~~~~~~~i~I~GG~~~~ 274 (810)
|.|-- --++.-++.-+++|+.+|-
T Consensus 279 ---------~~pvL-siavs~dd~t~viGmsnGl 302 (487)
T KOG0310|consen 279 ---------PGPVL-SIAVSPDDQTVVIGMSNGL 302 (487)
T ss_pred ---------cccee-eEEecCCCceEEEecccce
Confidence 11221 1223336788889998875
Done!