BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 003578
(809 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|1GAX|A Chain A, Crystal Structure Of Thermus Thermophilus Valyl-Trna
Synthetase Complexed With Trna(Val) And Valyl-Adenylate
Analogue
pdb|1GAX|B Chain B, Crystal Structure Of Thermus Thermophilus Valyl-Trna
Synthetase Complexed With Trna(Val) And Valyl-Adenylate
Analogue
pdb|1IVS|A Chain A, Crystal Structure Of Thermus Thermophilus Valyl-Trna
Synthetase Complexed With Trna(Val) And Valyl-Adenylate
Analogue
pdb|1IVS|B Chain B, Crystal Structure Of Thermus Thermophilus Valyl-Trna
Synthetase Complexed With Trna(Val) And Valyl-Adenylate
Analogue
pdb|1IYW|A Chain A, Preliminary Structure Of Thermus Thermophilus Ligand-Free
Valyl-Trna Synthetase
pdb|1IYW|B Chain B, Preliminary Structure Of Thermus Thermophilus Ligand-Free
Valyl-Trna Synthetase
Length = 862
Score = 631 bits (1628), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 339/764 (44%), Positives = 466/764 (60%), Gaps = 50/764 (6%)
Query: 59 LPKTFDFTSEERIYNWWESQGYFKPNFERGSDPFVISMPPPNVTGSLHMGHAMFVTLEDI 118
LPK +D S E + ++ F N + G PFVI MPPPNVTGSLHMGHA+ +L+D
Sbjct: 3 LPKAYDPKSVEPKWAEKWAKNPFVANPKSGKPPFVIFMPPPNVTGSLHMGHALDNSLQDA 62
Query: 119 MVRYHRMKGRPTLWLPGTDHAGIATQLVVEKMLAAEGIKRVELSRDEFTKRVWEWKEKYG 178
++RY RM+G +WLPGTDHAGIATQ+VVE++L EG R +L R++F +RVW+WKE+ G
Sbjct: 63 LIRYKRMRGFEAVWLPGTDHAGIATQVVVERLLLKEGKTRHDLGREKFLERVWQWKEESG 122
Query: 179 GTITSQIKRLGASCDWTRERFTLDEQLSRAVVEAFIRLHEKGLIYQGSYMVNWSPNLQTA 238
GTI Q+KRLGAS DW+RE FT+DE+ SRAV AF R + +GL Y+ +VNW P +T
Sbjct: 123 GTILKQLKRLGASADWSREAFTMDEKRSRAVRYAFSRYYHEGLAYRAPRLVNWCPRCETT 182
Query: 239 VSDLEVEYSEEPGTLYYIKYRVAGRSDFLTIATTRPETLFGDVALAVNPQDEHYSQFIGM 298
+SDLEVE PG LY ++Y V G F+ IAT RPET+F D A+AV+P+DE Y +G
Sbjct: 183 LSDLEVETEPTPGKLYTLRYEVEG-GGFIEIATVRPETVFADQAIAVHPEDERYRHLLGK 241
Query: 299 MAIVPMTYGRHVPIISDKYVDKEFGTGVLKISPGHDHNDYLLARKLGLPILNVMNKDGTL 358
A +P+T +PI++D V+K+FGTG LK++P HD DY + + GL ++V+N +G +
Sbjct: 242 RARIPLTEV-WIPILADPAVEKDFGTGALKVTPAHDPLDYEIGERHGLKPVSVINLEGRM 300
Query: 359 --NEVAGLFRGLDRFEARKKLWSDLEETGLAVKKEPHTLRVPRSQRGGEVIEPLVSKQWF 416
V RGLDRFEAR+K E G VK+E +T+ + R G IE + QW+
Sbjct: 301 EGERVPEALRGLDRFEARRKAVELFREAGHLVKEEDYTIALATCSRCGTPIEYAIFPQWW 360
Query: 417 VTMEPLAEKALHAVEKGELTIMPERFEKIYNHWLSNIKDWCISRQLWWGHRIPVWYI--- 473
+ M PLAE+ L + +G++ +PER++K+ WL N+KDW ISRQLWWGH+IP WY
Sbjct: 361 LRMRPLAEEVLKGLRRGDIAFVPERWKKVNMDWLENVKDWNISRQLWWGHQIPAWYCEDC 420
Query: 474 ----VGKEEEYIVARNADEALEKAHQKYGKNVEIYQDPDVLDTWFSSALWPFSTLGWPDV 529
V + E Y+ + EA K +D DV DTWFSSALWP STLGWP+
Sbjct: 421 QAVNVPRPERYLEDPTSCEACGSPRLK--------RDEDVFDTWFSSALWPLSTLGWPE- 471
Query: 530 SADDFKKFYPTTMLETGHDILFFWVARMVMMGIEFTGSVPFSHVYLHGLIRDSQGRKMSK 589
+D K FYP +L TG+DILF WV+RM + G F G PF V LHGL+ D +G+KMSK
Sbjct: 472 ETEDLKAFYPGDVLVTGYDILFLWVSRMEVSGYHFMGERPFKTVLLHGLVLDEKGQKMSK 531
Query: 590 TLGNVIDPIDTIKEFGADALRFT-ISLGTAGQDLSLSIERLTANKAFTNKLWNAGKFIL- 647
+ GNVIDP++ ++ +GADALRF I L T GQD+ L + L + F NKL+NA +F+L
Sbjct: 532 SKGNVIDPLEMVERYGADALRFALIYLATGGQDIRLDLRWLEMARNFANKLYNAARFVLL 591
Query: 648 --QNLPSQNDISRWEILLAYKFDEEECLCKAPLPECWVVSKLHMLIDTVTASYDKYFFGD 705
+ ++ D LA +F + S+L ++ +TA Y+
Sbjct: 592 SREGFQAKEDTP----TLADRF---------------MRSRLSRGVEEITALYEALDLAQ 632
Query: 706 VGRETYDFFWSDFADWYIEASKARLYRSEYDSDAIIAQAVLLYIFENILKLLHPFMPFVT 765
RE Y+ WS+F DWY+EA+K L + + + + + +LKLLHP MPF+T
Sbjct: 633 AAREVYELVWSEFCDWYLEAAKPALKAGNAHTLRTLEEVLAV-----LLKLLHPMMPFLT 687
Query: 766 EELWQSLRKRKEALIVSPWPQTSLPRHMSAIKRFENLQSLVILI 809
EL+Q+L KE L + WP+ R A + FE L+ V +
Sbjct: 688 SELYQALTG-KEELALEAWPEPG-GRDEEAERAFEALKQAVTAV 729
>pdb|1JZQ|A Chain A, Isoleucyl-Trna Synthetase Complexed With Isoleucyl-
Adenylate Analogue
pdb|1JZS|A Chain A, Isoleucyl-trna Synthetase Complexed With Mupirocin
pdb|1ILE|A Chain A, Isoleucyl-Trna Synthetase
Length = 821
Score = 250 bits (638), Expect = 2e-66, Method: Compositional matrix adjust.
Identities = 208/796 (26%), Positives = 345/796 (43%), Gaps = 96/796 (12%)
Query: 68 EERIYNWWESQGYFKPNFE--RGSDPFVISMPPPNVTGSLHMGHAMFVTLEDIMVRYHRM 125
EE + +W+ + F+ + E +G + + PP G H+GHA + +D+ RY M
Sbjct: 14 EEEVLAFWKREKIFQKSVENRKGGPRYTVYEGPPTANGLPHVGHAQARSYKDLFPRYKTM 73
Query: 126 KGRPTLWLPGTDHAGIATQLVVEKMLAAEGIKRVE-LSRDEFTKRVWEWKEKYGGTITSQ 184
+G G D G+ +L VEK L + + +E + F + E Y +
Sbjct: 74 RGYYAPRRAGWDTHGLPVELEVEKKLGLKSKREIEAYGIERFNQACRESVFTYEKEWEAF 133
Query: 185 IKRLGASCDWTRERFTLDEQLSRAVVEAFIRLHEKGLIYQGSYMVNWSPNLQTAVSDLEV 244
+R+ D TL+ ++ + L ++GL+Y+ +V + P T +S EV
Sbjct: 134 TERIAYWVDLEDAYATLEPTYIESIWWSLKNLFDRGLLYRDHKVVPYCPRCGTPLSSHEV 193
Query: 245 E--YSEEPGTLYYIKY------RVAGRSDFLTIATTRPETLFGDVALAVNPQDEHYSQFI 296
Y E Y+++ ++ L I TT P TL G+VA AV+P+ + + +
Sbjct: 194 ALGYKEIQDPSVYVRFPLKEPKKLGLEKASLLIWTTTPWTLPGNVAAAVHPEYTYAAFQV 253
Query: 297 GMMAIV----------------------------------PMTYGRHVPIISDKYVDKEF 322
G A++ P + ++ YV +E
Sbjct: 254 GDEALILEEGLGRKLLGEGTQVLKTFPGKALEGLPYTPPYPQALEKGYFVVLADYVSQED 313
Query: 323 GTGVLKISPGHDHNDYLLARKLGLPILNVMNKDGTLNEVAGLFRGLDRFEARKKLWSDLE 382
GTG++ +P D AR GLP+L ++++G L + F+GL EA + + DL
Sbjct: 314 GTGIVHQAPAFGAEDLETARVYGLPLLKTVDEEGKL--LVEPFKGLYFREANRAILRDLR 371
Query: 383 ETGLAVKKEPHTLRVPRSQRGGEVIEPLVSKQWFVTMEPLAEKALHAVEKGELTIMPERF 442
GL K+E + P R + ++ WF+ ++ + ++ + P
Sbjct: 372 GRGLLFKEESYLHSYPHCWRCSTPLMYYATESWFIKNTLFKDELIRNNQEIHW-VPPHIK 430
Query: 443 EKIYNHWLSNIKDWCISRQLWWGHRIPVWYI--VGKEE-----EYIVARNADEALE--KA 493
E Y WL N+ DW +SR +WG +P+W GKEE + + AR E
Sbjct: 431 EGRYGEWLKNLVDWALSRNRYWGTPLPIWVCQACGKEEAIGSFQELKARATKPLPEPFDP 490
Query: 494 HQKYGKNVEIY--------QDPDVLDTWFSSALWPFSTLGWPDVSADDFKKFYPTTMLET 545
H+ Y VE+ + P V+D W+ S PF++L +P + F++ +P +
Sbjct: 491 HRPYVDQVELACACGGTMRRVPYVIDVWYDSGAMPFASLHYPFEHEEVFRESFPADFIAE 550
Query: 546 GHDILFFWVARMVMMGIEFTGSVPFSHVYLHGLIRDSQGRKMSKTLGNVIDPIDTIKEFG 605
G D W + +G+ GS+ F +V HGLI D +G+KMSK+ GNV+DP D I++FG
Sbjct: 551 GIDQTRGWFNSLHQLGVMLFGSIAFKNVICHGLILDEKGQKMSKSKGNVVDPWDIIRKFG 610
Query: 606 ADALRFTISLGT---AGQDLSLSIERLTANKAFTNKLWNAGKFILQNLPSQNDISRWEIL 662
ADALR+ I + A + ++ R T F LWN F
Sbjct: 611 ADALRWYIYVSAPPEADRRFGPNLVRETVRDYFLT-LWNVYSF----------------F 653
Query: 663 LAYKFDEEECLCKAPLPEC------WVVSKLHMLIDTVTASYDKYFFGDVGRETYDFFWS 716
+ Y + L P PE W+++++ LI VT + + Y R DF
Sbjct: 654 VTYANLDRPDLKNPPPPEKRPEMDRWLLARMQDLIQRVTEALEAYDPTTSARALRDFVVE 713
Query: 717 DFADWYIEASKARLYRSEYDSDAIIAQAVLLYIFENILKLLHPFMPFVTEELWQSLRKR- 775
D + WY+ ++ R +++E D A A L + L PF PF+ E LWQ+L +
Sbjct: 714 DLSQWYVRRNRRRFWKNEDALDREAAYATLYEALVLVATLAAPFTPFLAEVLWQNLVRSV 773
Query: 776 ----KEALIVSPWPQT 787
KE++ ++ WP+
Sbjct: 774 RLEAKESVHLADWPEA 789
>pdb|1QU2|A Chain A, Insights Into Editing From An Ile-Trna Synthetase
Structure With Trna(Ile) And Mupirocin
pdb|1QU3|A Chain A, Insights Into Editing From An Ile-Trna Synthetase
Structure With Trna(Ile) And Mupirocin
pdb|1FFY|A Chain A, Insights Into Editing From An Ile-Trna Synthetase
Structure With Trna(Ile) And Mupirocin
Length = 917
Score = 239 bits (610), Expect = 4e-63, Method: Compositional matrix adjust.
Identities = 204/801 (25%), Positives = 355/801 (44%), Gaps = 109/801 (13%)
Query: 59 LPKTFDF-------TSEERIYNWWESQGYFKPNFER--GSDPFVISMPPPNVTGSLHMGH 109
+PKT DF E +I W+++ + E+ G++ F++ PP G+LHMGH
Sbjct: 9 MPKT-DFPMRGGLPNKEPQIQEKWDAEDQYHKALEKNKGNETFILHDGPPYANGNLHMGH 67
Query: 110 AMFVTLEDIMVRYHRMKGRPTLWLPGTDHAGIATQLVVEKMLAAEGIKRVELSRDEFTKR 169
A+ L+D +VRY M+G ++PG D G L +E+ L +G+ R ++S EF ++
Sbjct: 68 ALNKILKDFIVRYKTMQGFYAPYVPGWDTHG----LPIEQALTKKGVDRKKMSTAEFREK 123
Query: 170 VWEWKEKYGGTITSQIKRLGASCDWTRERFTLDEQLSRAVVEAFIRLHEKGLIYQGSYMV 229
E+ + +RLG D+ TL + A + F + +KGLIY+G V
Sbjct: 124 CKEFALEQIELQKKDFRRLGVRGDFNDPYITLKPEYEAAQIRIFGEMADKGLIYKGKKPV 183
Query: 230 NWSPNLQTAVSDLEVEYSEEPGTLYYIKYRVAGRSDFL------TIATTRPETLFGDVAL 283
WSP+ ++++++ E+EY ++ Y+ + V + I TT P T+ +VA+
Sbjct: 184 YWSPSSESSLAEAEIEYHDKRSASIYVAFNVKDDKGVVDADAKFIIWTTTPWTIPSNVAI 243
Query: 284 AVNPQ---------DEHY------------------------SQFIG-----MMAIVPMT 305
V+P+ E Y ++ G ++A P
Sbjct: 244 TVHPELKYGQYNVNGEKYIIAEALSDAVAEALDWDKASIKLEKEYTGKELEWVVAQHPF- 302
Query: 306 YGRHVPIISDKYVDKEFGTGVLKISPGHDHNDYLLARKLGLPILNVMNKDGTLNEVAGLF 365
R +I+ +V + GTG + +PGH +DY++ ++ LP+++ ++ G E G F
Sbjct: 303 LDRESLVINGDHVTTDAGTGCVHTAPGHGEDDYIVGQQYELPVISPIDDKGVFTEEGGQF 362
Query: 366 RGLDRFEARKKLWSDLEETGLAVKKEPHTLRVPRSQRGGEVIEPLVSKQWFVTMEPLAEK 425
G+ +A K + L E G +K + T P R + + + QWF ++ + +
Sbjct: 363 EGMFYDKANKAVTDLLTEKGALLKLDFITHSYPHDWRTKKPVIFRATPQWFASISKVRQD 422
Query: 426 ALHAVEKGELTIMPERFEKIYNHWLSNIKDWCISRQLWWGHRIPVWY------IVGKEEE 479
L A+E + + +IYN + + +W ISRQ WG +PV+Y I+ KE
Sbjct: 423 ILDAIENTNFKVNWGK-TRIYN-MVRDRGEWVISRQRVWGVPLPVFYAENGEIIMTKETV 480
Query: 480 YIVA-------------RNADEALEKAHQKYGK-NVEIYQDPDVLDTWFSSALWPFSTL- 524
VA R A + L + G N ++ D++D WF S L
Sbjct: 481 NHVADLFAEHGSNIWFEREAKDLLPEGFTHPGSPNGTFTKETDIMDVWFDSGSSHRGVLE 540
Query: 525 GWPDVSADDFKKFYPTTMLETGHDILFFWVARMVMMGIEFTGSVPFSHVYLHGLIRDSQG 584
P++S +P M G D W + + G P+ + HG + D +G
Sbjct: 541 TRPELS-------FPADMYLEGSDQYRGWFNSSITTSVATRGVSPYKFLLSHGFVMDGEG 593
Query: 585 RKMSKTLGNVIDPIDTIKEFGADALRFTISLGTAGQDLSLSIERLTANKAFTNKLWNAGK 644
+KMSK+LGNVI P +K+ GAD R +S D+ +S E L K+ N +
Sbjct: 594 KKMSKSLGNVIVPDQVVKQKGADIARLWVSSTDYLADVRISDEILKQTSDDYRKIRNTLR 653
Query: 645 FILQNL----PSQNDISRWEILLAYKFDEEECLCKAPLPECWVVSKLHMLIDTVTASYDK 700
F+L N+ P + I E+L ++ ++++L + +Y+
Sbjct: 654 FMLGNINDFNPDTDSIPESELLEVDRY---------------LLNRLREFTASTINNYEN 698
Query: 701 YFFGDVGRETYDFFWSDFADWYIEASKARLYRSEYDSDAIIA-QAVLLYIFENILKLLHP 759
+ + ++ +E +F + +++Y++ K LY + DS + Q VL I ++ KLL P
Sbjct: 699 FDYLNIYQEVQNFINVELSNFYLDYGKDILYIEQRDSHIRRSMQTVLYQILVDMTKLLAP 758
Query: 760 FMPFVTEELWQSLRKRKEALI 780
+ EE+W KE +
Sbjct: 759 ILVHTAEEVWSHTPHVKEESV 779
>pdb|1WKA|A Chain A, Structural Basis For Non-Cognate Amino Acid Discrimination
By The Valyl-Trna Synthetase Editing Domain
Length = 147
Score = 123 bits (309), Expect = 4e-28, Method: Compositional matrix adjust.
Identities = 66/147 (44%), Positives = 93/147 (63%), Gaps = 4/147 (2%)
Query: 250 PGTLYYIKYRVAGRSDFLTIATTRPETLFGDVALAVNPQDEHYSQFIGMMAIVPMTYGRH 309
PG LY ++Y V G F+ IAT RPET+F D A+AV+P+DE Y +G A +P+T
Sbjct: 3 PGKLYTLRYEVEG-GGFIEIATVRPETVFADQAIAVHPEDERYRHLLGKRARIPLTE-VW 60
Query: 310 VPIISDKYVDKEFGTGVLKISPGHDHNDYLLARKLGLPILNVMNKDGTL--NEVAGLFRG 367
+PI++D V+K+FGTG LK++P HD DY + + GL ++V+N +G + V RG
Sbjct: 61 IPILADPAVEKDFGTGALKVTPAHDPLDYEIGERHGLKPVSVINLEGRMEGERVPEALRG 120
Query: 368 LDRFEARKKLWSDLEETGLAVKKEPHT 394
LDRFEAR+K E G VK+E +T
Sbjct: 121 LDRFEARRKAVELFREAGHLVKEEDYT 147
>pdb|1WK9|A Chain A, Structural Basis For Non-Cognate Amino Acid Discrimination
By The Valyl-Trna Synthetase Editing Domain
Length = 146
Score = 122 bits (305), Expect = 1e-27, Method: Compositional matrix adjust.
Identities = 65/144 (45%), Positives = 91/144 (63%), Gaps = 4/144 (2%)
Query: 250 PGTLYYIKYRVAGRSDFLTIATTRPETLFGDVALAVNPQDEHYSQFIGMMAIVPMTYGRH 309
PG LY ++Y V G F+ IAT RPET+F D A+AV+P+DE Y +G A +P+T
Sbjct: 3 PGKLYTLRYEVEG-GGFIEIATVRPETVFADQAIAVHPEDERYRHLLGKRARIPLTE-VW 60
Query: 310 VPIISDKYVDKEFGTGVLKISPGHDHNDYLLARKLGLPILNVMNKDGTL--NEVAGLFRG 367
+PI++D V+K+FGTG LK++P HD DY + + GL ++V+N +G + V RG
Sbjct: 61 IPILADPAVEKDFGTGALKVTPAHDPLDYEIGERHGLKPVSVINLEGRMEGERVPEALRG 120
Query: 368 LDRFEARKKLWSDLEETGLAVKKE 391
LDRFEAR+K E G VK+E
Sbjct: 121 LDRFEARRKAVELFREAGHLVKEE 144
>pdb|1WKB|A Chain A, Crystal Structure Of Leucyl-Trna Synthetase From The
Archaeon Pyrococcus Horikoshii Reveals A Novel Editing
Domain Orientation
Length = 810
Score = 108 bits (269), Expect = 2e-23, Method: Compositional matrix adjust.
Identities = 193/852 (22%), Positives = 337/852 (39%), Gaps = 199/852 (23%)
Query: 68 EERIYNWWESQGYFKPNF--ERGSDPFVISMPPPNVTGSLHMGHAMFVTLEDIMVRYHRM 125
EE+ W F+PN + F I++ P ++G LH+GHA T+ D++ R+ RM
Sbjct: 10 EEKWQKRWLEAKIFEPNIRDKPKEKKFYITVAFPYLSGHLHVGHARTYTIPDVIARFKRM 69
Query: 126 KGR----PTLW-LPGTDHAGIATQLVVEKMLAAEGIKRVELSRDEFT---KRVWEWKEK- 176
+G P W + G+ GIA + + K + + RD + + +W +++
Sbjct: 70 QGYNVLFPMAWHITGSPIVGIAER------IKNRDPKTIWIYRDVYKVPEEILWTFEDPI 123
Query: 177 -----YGGTITSQIKRLGASCDWTRERFT--LDEQLSRAVVEAFIRLHEKGLIYQGSYMV 229
+ R G S DW+RE +T L S+ + F +L EKG I +G++ V
Sbjct: 124 NIVKYFMKAAKETFIRAGFSVDWSREFYTTSLFPPFSKFIEWQFWKLKEKGYIVKGAHRV 183
Query: 230 NWSPNLQTAVSDLEVEYSEEPGTLYYI----KYRVAGRSDFLTIATTRPETLFGDVALAV 285
W P + T + D ++ E+ L YI + R G +L AT RPET++G + V
Sbjct: 184 RWDPVVGTPLGDHDLMEGEDVPILDYIIIKFELRENGEVIYLPAATLRPETVYGVTNMWV 243
Query: 286 NP------------------------------QDEHY--------SQFIGMMAIVPMTYG 307
NP QD + IG P++ G
Sbjct: 244 NPNATYVKAKVRRKDKEETWIVSKEAAYKLSFQDREIEVIEEFKGEKLIGKYVRNPVS-G 302
Query: 308 RHVPIISDKYVDKEFGTGVLKISPGHDHNDYLLARKL----------------------- 344
V I+ ++VD + TGV+ P H D++ L
Sbjct: 303 DEVIILPAEFVDPDNATGVVMSVPAHAPFDHVALEDLKRETEILEKYDIDPRIVENITYI 362
Query: 345 ---------GLPILNVMNKDGTLNEV------------------AGLFR-----GLDRFE 372
P + +NK G ++ G+F+ G E
Sbjct: 363 SLIKLEGYGDFPAVEEVNKLGIKSQKDKEKLEQATKTIYKAEYHKGIFKVPPYEGKPVQE 422
Query: 373 ARKKLWSDLEETGLAVKKEPHTLRVPRSQRGGEVIEPLVSKQWFVTM--EPLAEKALHAV 430
++ + ++ E G+A + S+ G + ++ QWF+ EKA A+
Sbjct: 423 VKEAIAKEMLEKGIAEIMYEFAEKNVISRFGNRAVIKIIHDQWFIDYGNPEWKEKARKAL 482
Query: 431 EKGELTIMPE----RFEKIYNHWLSNIKDWCISRQLWWGHRIPVWYIVGKEEEYIVARNA 486
E+ + I+PE +FE I + WL K C +R++ G +P W + E+++ +
Sbjct: 483 ER--MKILPETRRAQFEAIID-WLD--KKAC-ARKIGLGTPLP-W-----DPEWVIESLS 530
Query: 487 DEALEKAHQKYGKNV-----EIYQDPDVLDTWFSSALW--PFSTL---------GWP--- 527
D + A+ +++ E DP+ L F ++ FS G P
Sbjct: 531 DSTIYMAYYTISRHINKLRQEGKLDPEKLTPEFFDYIFLEEFSEDKEKELEKKTGIPAEI 590
Query: 528 -DVSADDFKKFYPTTMLETGHDI----LFFWVARMVMMGIEFTGSVPFSHVYLHGLIRDS 582
++F+ +YP +G D+ L F++ V + F + ++G
Sbjct: 591 IHEMKEEFEYWYPLDWRCSGKDLIPNHLTFFIFNHVAI---FREEHWPKGIAVNGF-GTL 646
Query: 583 QGRKMSKTLGNVIDPIDTIKEFGADALRFTISLGTAGQDLSLSIERLTANKAFTNKLWNA 642
+G+KMSK+ GNV++ ID I+E GAD +R I + A D R K
Sbjct: 647 EGQKMSKSKGNVLNFIDAIEENGADVVRLYI-MSLAEHDSDFDWRRKEVGKL-------- 697
Query: 643 GKFILQNLPSQNDISRWEILLAYKFDEEECLCKAPLPEC--WVVSKLHMLIDTVTASYDK 700
+ I R+ L++ +F E E L + W++ +L+ I T + ++
Sbjct: 698 ----------RKQIERFYELIS-QFAEYEVKGNVELKDIDRWMLHRLNKAIKETTNALEE 746
Query: 701 YFFGDVGRETYDFFWSDFADWYIEASKARLYRSEYDSDAIIAQAVLLYIFENILKLLHPF 760
+ + + +D WY+ ++ R D +A + VL + + ++L+ PF
Sbjct: 747 FRTRTAVQWAFYSIMNDLR-WYLRRTEGR------DDEA--KRYVLRTLADVWVRLMAPF 797
Query: 761 MPFVTEELWQSL 772
P + EELW+ L
Sbjct: 798 TPHICEELWEKL 809
>pdb|1WZ2|A Chain A, The Crystal Structure Of Leucyl-Trna Synthetase And
Trna(Leucine) Complex
pdb|1WZ2|B Chain B, The Crystal Structure Of Leucyl-Trna Synthetase And
Trna(Leucine) Complex
Length = 967
Score = 107 bits (266), Expect = 4e-23, Method: Compositional matrix adjust.
Identities = 193/852 (22%), Positives = 337/852 (39%), Gaps = 199/852 (23%)
Query: 68 EERIYNWWESQGYFKPNF--ERGSDPFVISMPPPNVTGSLHMGHAMFVTLEDIMVRYHRM 125
EE+ W F+PN + F I++ P ++G LH+GHA T+ D++ R+ RM
Sbjct: 10 EEKWQKRWLEAKIFEPNIRDKPKEKKFYITVAFPYLSGHLHVGHARTYTIPDVIARFKRM 69
Query: 126 KGR----PTLW-LPGTDHAGIATQLVVEKMLAAEGIKRVELSRDEFT---KRVWEWKEK- 176
+G P W + G+ GIA + + K + + RD + + +W +++
Sbjct: 70 QGYNVLFPMAWHITGSPIVGIAER------IKNRDPKTIWIYRDVYKVPEEILWTFEDPI 123
Query: 177 -----YGGTITSQIKRLGASCDWTRERFT--LDEQLSRAVVEAFIRLHEKGLIYQGSYMV 229
+ R G S DW+RE +T L S+ + F +L EKG I +G++ V
Sbjct: 124 NIVKYFMKAAKETFIRAGFSVDWSREFYTTSLFPPFSKFIEWQFWKLKEKGYIVKGAHRV 183
Query: 230 NWSPNLQTAVSDLEVEYSEEPGTLYYI----KYRVAGRSDFLTIATTRPETLFGDVALAV 285
W P + T + D ++ E+ L YI + R G +L AT RPET++G + V
Sbjct: 184 RWDPVVGTPLGDHDLMEGEDVPILDYIIIKFELRENGEVIYLPAATLRPETVYGVTNMWV 243
Query: 286 NP------------------------------QDEHY--------SQFIGMMAIVPMTYG 307
NP QD + IG P++ G
Sbjct: 244 NPNATYVKAKVRRKDKEETWIVSKEAAYKLSFQDREIEVIEEFKGEKLIGKYVRNPVS-G 302
Query: 308 RHVPIISDKYVDKEFGTGVLKISPGHDHNDYLLARKL----------------------- 344
V I+ ++VD + TGV+ P H D++ L
Sbjct: 303 DEVIILPAEFVDPDNATGVVMSVPAHAPFDHVALEDLKRETEILEKYDIDPRIVENITYI 362
Query: 345 ---------GLPILNVMNKDGTLNEV------------------AGLFR-----GLDRFE 372
P + +NK G ++ G+F+ G E
Sbjct: 363 SLIKLEGYGDFPAVEEVNKLGIKSQKDKEKLEQATKTIYKAEYHKGIFKVPPYEGKPVQE 422
Query: 373 ARKKLWSDLEETGLAVKKEPHTLRVPRSQRGGEVIEPLVSKQWFVTM--EPLAEKALHAV 430
++ + ++ E G+A + S+ G + ++ QWF+ EKA A+
Sbjct: 423 VKEAIAKEMLEKGIAEIMYEFAEKNVISRFGNRAVIKIIHDQWFIDYGNPEWKEKARKAL 482
Query: 431 EKGELTIMPE----RFEKIYNHWLSNIKDWCISRQLWWGHRIPVWYIVGKEEEYIVARNA 486
E+ + I+PE +FE I + WL K C +R++ G +P W + E+++ +
Sbjct: 483 ER--MKILPETRRAQFEAIID-WLD--KKAC-ARKIGLGTPLP-W-----DPEWVIESLS 530
Query: 487 DEALEKAHQKYGKNV-----EIYQDPDVLDTWFSSALW--PFSTL---------GWP--- 527
D + A+ +++ E DP+ L F ++ FS G P
Sbjct: 531 DSTIYMAYYTISRHINKLRQEGKLDPEKLTPEFFDYIFLEEFSEDKEKELEKKTGIPAEI 590
Query: 528 -DVSADDFKKFYPTTMLETGHDI----LFFWVARMVMMGIEFTGSVPFSHVYLHGLIRDS 582
++F+ +YP +G D+ L F++ V + F + ++G
Sbjct: 591 IHEMKEEFEYWYPLDWRCSGKDLIPNHLTFFIFNHVAI---FREEHWPKGIAVNGF-GTL 646
Query: 583 QGRKMSKTLGNVIDPIDTIKEFGADALRFTISLGTAGQDLSLSIERLTANKAFTNKLWNA 642
+G+KMSK+ GNV++ ID I+E GAD +R I + A D R K
Sbjct: 647 EGQKMSKSKGNVLNFIDAIEENGADVVRLYI-MSLAEHDSDFDWRRKEVGKL-------- 697
Query: 643 GKFILQNLPSQNDISRWEILLAYKFDEEECLCKAPLPEC--WVVSKLHMLIDTVTASYDK 700
+ I R+ L++ +F E E L + W++ +L+ I T + ++
Sbjct: 698 ----------RKQIERFYELIS-QFAEYEVKGNVELKDIDRWMLHRLNKAIKETTNALEE 746
Query: 701 YFFGDVGRETYDFFWSDFADWYIEASKARLYRSEYDSDAIIAQAVLLYIFENILKLLHPF 760
+ + + +D WY+ ++ R D +A + VL + + ++L+ PF
Sbjct: 747 FRTRTAVQWAFYSIMNDLR-WYLRRTEGR------DDEA--KRYVLRTLADVWVRLMAPF 797
Query: 761 MPFVTEELWQSL 772
P + EELW+ L
Sbjct: 798 TPHICEELWEKL 809
>pdb|4AQ7|A Chain A, Ternary Complex Of E. Coli Leucyl-Trna Synthetase,
Trna(Leu) And Leucyl-Adenylate Analogue In The
Aminoacylation Conformation
pdb|4AQ7|D Chain D, Ternary Complex Of E. Coli Leucyl-Trna Synthetase,
Trna(Leu) And Leucyl-Adenylate Analogue In The
Aminoacylation Conformation
pdb|4ARC|A Chain A, Ternary Complex Of E. Coli Leucyl-Trna Synthetase,
Trna(Leu) And Leucine In The Editing Conformation
pdb|4ARI|A Chain A, Ternary Complex Of E. Coli Leucyl-Trna Synthetase,
Trna(Leu) And The Benzoxaborole An2679 In The Editing
Conformation
pdb|4AS1|A Chain A, Ternary Complex Of E. Coli Leucyl-Trna Synthetase,
Trna(Leu) And The Benzoxaborole An2679 In The Editing
Conformation
pdb|3ZGZ|A Chain A, Ternary Complex Of E. Coli Leucyl-trna Synthetase,
Trna(leu) And Toxic Moiety From Agrocin 84 (tm84) In
Aminoacylation- Like Conformation
pdb|3ZGZ|D Chain D, Ternary Complex Of E. Coli Leucyl-trna Synthetase,
Trna(leu) And Toxic Moiety From Agrocin 84 (tm84) In
Aminoacylation- Like Conformation
Length = 880
Score = 103 bits (258), Expect = 3e-22, Method: Compositional matrix adjust.
Identities = 112/444 (25%), Positives = 173/444 (38%), Gaps = 117/444 (26%)
Query: 68 EERIYNWWESQGYFKPNFERGSDPFVISMPPPNVTGSLHMGHAMFVTLEDIMVRYHRMKG 127
E ++ W+ + F+ + + + P +G LHMGH T+ D++ RY RM G
Sbjct: 31 ESKVQLHWDEKRTFEVTEDESKEKYYCLSMLPYPSGRLHMGHVRNYTIGDVIARYQRMLG 90
Query: 128 RPTLWLPGTDHAGIATQLVVEKMLAAEGIKRVELSRDEFTKRVWEWKEKYGGTITSQIKR 187
+ L G D G+ + K A W + +Q+K
Sbjct: 91 KNVLQPIGWDAFGLPAEGAAVKNNTAPA----------------PWTYDNIAYMKNQLKM 134
Query: 188 LGASCDWTRERFTLDEQLSRAVVEAFIRLHEKGLIYQGSYMVNWSPNLQTAVSDLEV--- 244
LG DW+RE T + R + F L++KGL+Y+ + VNW PN QT +++ +V
Sbjct: 135 LGFGYDWSRELATCTPEYYRWEQKFFTELYKKGLVYKKTSAVNWCPNDQTVLANEQVIDG 194
Query: 245 ----------------------EYSEE-----------PGTLYYIKYRVAGRS------- 264
Y++E P T+ ++ GRS
Sbjct: 195 CCWRCDTKVERKEIPQWFIKITAYADELLNDLDKLDHWPDTVKTMQRNWIGRSEGVEITF 254
Query: 265 ------DFLTIATTRPETLFGDVALAV-------------NPQ-----DEHYSQFI---- 296
+ LT+ TTRP+T G LAV NP+ DE + +
Sbjct: 255 NVNDYDNTLTVYTTRPDTFMGCTYLAVAAGHPLAQKAAENNPELAAFIDECRNTKVAEAE 314
Query: 297 -----------GMMAIVPMTYGRHVPIISDKYVDKEFGTGVLKISPGHDHNDYLLARKLG 345
G A+ P+T G +P+ + +V E+GTG + PGHD DY A K G
Sbjct: 315 MATMEKKGVDTGFKAVHPLT-GEEIPVWAANFVLMEYGTGAVMAVPGHDQRDYEFASKYG 373
Query: 346 LPILNV-MNKDGTLNEV-------------AGLFRGLDRFEARKKLWSDLEETGLAVKKE 391
L I V + DG+ ++ +G F GLD A + L G+ +K
Sbjct: 374 LNIKPVILAADGSEPDLSQQALTEKGVLFNSGEFNGLDHEAAFNAIADKLTAMGVGERKV 433
Query: 392 PHTLR---VPRSQRGGEVIEPLVS 412
+ LR V R + G I P+V+
Sbjct: 434 NYRLRDWGVSRQRYWGAPI-PMVT 456
Score = 39.7 bits (91), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 48/203 (23%), Positives = 91/203 (44%), Gaps = 36/203 (17%)
Query: 586 KMSKTLGNVIDPIDTIKEFGADALRFTISLGTAGQDLSLSIERLTANKA--FTNKLWNAG 643
KMSK+ N IDP ++ +GAD +R + + D++L + A F ++W
Sbjct: 639 KMSKSKNNGIDPQVMVERYGADTVRLFMMFASPA-DMTLEWQESGVEGANRFLKRVW--- 694
Query: 644 KFILQNLPSQNDISRWEILLAYKFDEEECLCKAPLPECWVVSKLHMLIDTVTASYDKYFF 703
K + ++ ++ D++ A D KA + +H I VT
Sbjct: 695 KLVYEHT-AKGDVA------ALNVDALTENQKA------LRRDVHKTIAKVT-------- 733
Query: 704 GDVG-RETYDFFWSDFADWYIEASKARLYRSEYDSDAIIAQAVLLYIFENILKLLHPFMP 762
D+G R+T++ + + + +KA ++ + D + Q LL ++++L+PF P
Sbjct: 734 DDIGRRQTFNTAIAAIMELMNKLAKA---PTDGEQDRALMQEALL----AVVRMLNPFTP 786
Query: 763 FVTEELWQSLRKRKEALIVSPWP 785
+ LWQ L+ + + +PWP
Sbjct: 787 HICFTLWQELKGEGD-IDNAPWP 808
>pdb|2V0C|A Chain A, Leucyl-Trna Synthetase From Thermus Thermophilus Complexed
With A Sulphamoyl Analogue Of Leucyl-Adenylate In The
Synthetic Site And An Adduct Of Amp With 5-Fluoro-1,3-
Dihydro-1-Hydroxy-2,1-Benzoxaborole (An2690) In The
Editing Site
Length = 878
Score = 102 bits (255), Expect = 7e-22, Method: Compositional matrix adjust.
Identities = 104/430 (24%), Positives = 160/430 (37%), Gaps = 120/430 (27%)
Query: 68 EERIYNWWESQGYFKPN---FERGSDPFVISMPPPNVTGSLHMGHAMFVTLEDIMVRYHR 124
E + +WE +G+ K RG ++ P P +G LHMGH T+ D++ R+ R
Sbjct: 10 EAKWQRFWEEKGFMKAKDLPGGRGKQYVLVMFPYP--SGDLHMGHLKNYTMGDVLARFRR 67
Query: 125 MKGRPTLWLPGTDHAGIATQLVVEKMLAAEGIKRVELSRDEFTKRVWEWKEKYGGTITSQ 184
M+G L G D G+ + K F +W
Sbjct: 68 MQGYEVLHPMGWDAFGLPAENAALK----------------FGVHPKDWTYANIRQAKES 111
Query: 185 IKRLGASCDWTRERFTLDEQLSRAVVEAFIRLHEKGLIYQGSYMVNWSPNLQTAVSDLEV 244
++ +G DW RE T + + R F+++ EKGL Y+ +VNW P QT +++ +V
Sbjct: 112 LRLMGILYDWDREVTTCEPEYYRWNQWIFLKMWEKGLAYRAKGLVNWCPKCQTVLANEQV 171
Query: 245 --------------------------EYSEE----------PGTLYYIKYRVAGRSDF-- 266
Y+E P + ++ GRS+
Sbjct: 172 VEGRCWRHEDTPVEKRELEQWYLRITAYAERLLKDLEGLNWPEKVKAMQRAWIGRSEGAE 231
Query: 267 -----------LTIATTRPETLFGDVALAVNPQD-------------------------- 289
+ + TTRP+TLFG L + P+
Sbjct: 232 ILFPVEGKEVRIPVFTTRPDTLFGATFLVLAPEHPLTLELAAPEKREEVLAYVEAAKRKT 291
Query: 290 ---------EHYSQFIGMMAIVPMTYGRHVPIISDKYVDKEFGTGVLKISPGHDHNDYLL 340
E F+G A+ P T G +PI + YV +GTG + P HD DY
Sbjct: 292 EIERQAEGREKTGVFLGAYALNPAT-GERIPIWTADYVLFGYGTGAIMAVPAHDQRDYEF 350
Query: 341 ARKLGLPILNVMNKDGT--------------LNEVAGLFRGLDRFEARKKLWSDLEETGL 386
ARK GLPI V+ + G + +G F G + E ++K+ + LEE GL
Sbjct: 351 ARKFGLPIKKVIERPGEPLPEPLERAYEEPGIMVNSGPFDGTESEEGKRKVIAWLEEKGL 410
Query: 387 AVKKEPHTLR 396
+ + LR
Sbjct: 411 GKGRVTYRLR 420
>pdb|1OBH|A Chain A, Leucyl-Trna Synthetase From Thermus Thermophilus Complexed
With A Pre-Transfer Editing Substrate Analogue In Both
Synthetic Active Site And Editing Site
pdb|2BTE|A Chain A, Thermus Thermophilus Leucyl-Trna Synthetase Complexed With
With A Trnaleu Transcript In The Post-Editing
Conformation And A Post-Transfer Editing Substrate
Analogue
pdb|2BTE|D Chain D, Thermus Thermophilus Leucyl-Trna Synthetase Complexed With
With A Trnaleu Transcript In The Post-Editing
Conformation And A Post-Transfer Editing Substrate
Analogue
pdb|2BYT|A Chain A, Thermus Thermophilus Leucyl-Trna Synthetase Complexed With
A Trnaleu Transcript In The Post-Editing Conformation
pdb|2BYT|D Chain D, Thermus Thermophilus Leucyl-Trna Synthetase Complexed With
A Trnaleu Transcript In The Post-Editing Conformation
pdb|1H3N|A Chain A, Leucyl-Trna Synthetase From Thermus Thermophilus Complexed
With A Sulphamoyl Analogue Of Leucyl-Adenylate
pdb|1OBC|A Chain A, Leucyl-Trna Synthetase From Thermus Thermophilus Complexed
With A Post-Transfer Editing Substrate Analogue
pdb|2V0G|A Chain A, Leucyl-Trna Synthetase From Thermus Thermophilus Complexed
With A Trna(Leu) Transcript With 5-Fluoro-1,3-Dihydro-1-
Hydroxy-2,1-Benzoxaborole (An2690) Forming An Adduct To
The Ribose Of Adenosine-76 In The Enzyme Editing Site.
pdb|2V0G|D Chain D, Leucyl-Trna Synthetase From Thermus Thermophilus Complexed
With A Trna(Leu) Transcript With 5-Fluoro-1,3-Dihydro-1-
Hydroxy-2,1-Benzoxaborole (An2690) Forming An Adduct To
The Ribose Of Adenosine-76 In The Enzyme Editing Site
Length = 878
Score = 102 bits (254), Expect = 8e-22, Method: Compositional matrix adjust.
Identities = 104/430 (24%), Positives = 160/430 (37%), Gaps = 120/430 (27%)
Query: 68 EERIYNWWESQGYFKPN---FERGSDPFVISMPPPNVTGSLHMGHAMFVTLEDIMVRYHR 124
E + +WE +G+ K RG ++ P P +G LHMGH T+ D++ R+ R
Sbjct: 10 EAKWQRFWEEKGFMKAKDLPGGRGKQYVLVMFPYP--SGDLHMGHLKNYTMGDVLARFRR 67
Query: 125 MKGRPTLWLPGTDHAGIATQLVVEKMLAAEGIKRVELSRDEFTKRVWEWKEKYGGTITSQ 184
M+G L G D G+ + K F +W
Sbjct: 68 MQGYEVLHPMGWDAFGLPAENAALK----------------FGVHPKDWTYANIRQAKES 111
Query: 185 IKRLGASCDWTRERFTLDEQLSRAVVEAFIRLHEKGLIYQGSYMVNWSPNLQTAVSDLEV 244
++ +G DW RE T + + R F+++ EKGL Y+ +VNW P QT +++ +V
Sbjct: 112 LRLMGILYDWDREVTTCEPEYYRWNQWIFLKMWEKGLAYRAKGLVNWCPKCQTVLANEQV 171
Query: 245 --------------------------EYSEE----------PGTLYYIKYRVAGRSDF-- 266
Y+E P + ++ GRS+
Sbjct: 172 VEGRCWRHEDTPVEKRELEQWYLRITAYAERLLKDLEGLNWPEKVKAMQRAWIGRSEGAE 231
Query: 267 -----------LTIATTRPETLFGDVALAVNPQD-------------------------- 289
+ + TTRP+TLFG L + P+
Sbjct: 232 ILFPVEGKEVRIPVFTTRPDTLFGATFLVLAPEHPLTLELAAPEKREEVLAYVEAAKRKT 291
Query: 290 ---------EHYSQFIGMMAIVPMTYGRHVPIISDKYVDKEFGTGVLKISPGHDHNDYLL 340
E F+G A+ P T G +PI + YV +GTG + P HD DY
Sbjct: 292 EIERQAEGREKTGVFLGAYALNPAT-GERIPIWTADYVLFGYGTGAIMAVPAHDQRDYEF 350
Query: 341 ARKLGLPILNVMNKDGT--------------LNEVAGLFRGLDRFEARKKLWSDLEETGL 386
ARK GLPI V+ + G + +G F G + E ++K+ + LEE GL
Sbjct: 351 ARKFGLPIKKVIERPGEPLPEPLERAYEEPGIMVNSGPFDGTESEEGKRKVIAWLEEKGL 410
Query: 387 AVKKEPHTLR 396
+ + LR
Sbjct: 411 GKGRVTYRLR 420
>pdb|2D54|A Chain A, Crystal Structure Of Methionyl Trna Synthetase Y225a
Mutant From Thermus Thermophilus
Length = 502
Score = 66.2 bits (160), Expect = 6e-11, Method: Compositional matrix adjust.
Identities = 44/126 (34%), Positives = 63/126 (50%), Gaps = 12/126 (9%)
Query: 509 VLDTWFSSALWPFSTLGWPDVSADDFKKFYPTTMLETGHDIL----FFWVARMVMMGIEF 564
V WF + L S L +P+ A ++ F+P G DIL FW + GI
Sbjct: 223 VTAVWFDALLNYVSALDYPEGEA--YRTFWPHAWHLIGKDILKPHAVFWPTMLKAAGIPM 280
Query: 565 TGSVPFSHVYLHGLIRDSQGRKMSKTLGNVIDPIDTIKEFGADALRFTISLGTA-GQDLS 623
+ H+ + G + GRKMSKTLGNV+DP ++++G DALR+ + GQD
Sbjct: 281 -----YRHLNVGGFLLGPDGRKMSKTLGNVVDPFALLEKYGRDALRYYLLREIPYGQDTP 335
Query: 624 LSIERL 629
+S E L
Sbjct: 336 VSEEAL 341
Score = 42.4 bits (98), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 37/137 (27%), Positives = 57/137 (41%), Gaps = 20/137 (14%)
Query: 92 FVISMPPPNVTGSLHMGHAMFVTLEDIMVRYHRMKGRPTLWLPGTDHAGIATQLVVEKML 151
F ++ P V H+GHA + D + R+HR+ G T +L GTD G
Sbjct: 5 FYVTTPIYYVNAEPHLGHAYTTVVADFLARWHRLDGYRTFFLTGTDEHG----------- 53
Query: 152 AAEGIKRVELSRDEFTKRVWEWKEKYGGTITSQIKRLG-ASCDWTRERFTLDEQLSRAVV 210
E + R + E K + ++ G LG A D+ R T +E+ + V
Sbjct: 54 --ETVYRAAQAAGEDPK---AFVDRVSGRFKRAWDLLGIAYDDFIR---TTEERHKKVVQ 105
Query: 211 EAFIRLHEKGLIYQGSY 227
+++E G IY G Y
Sbjct: 106 LVLKKVYEAGDIYYGEY 122
>pdb|1A8H|A Chain A, Methionyl-Trna Synthetase From Thermus Thermophilus
Length = 500
Score = 65.9 bits (159), Expect = 9e-11, Method: Compositional matrix adjust.
Identities = 43/123 (34%), Positives = 62/123 (50%), Gaps = 12/123 (9%)
Query: 512 TWFSSALWPFSTLGWPDVSADDFKKFYPTTMLETGHDIL----FFWVARMVMMGIEFTGS 567
WF + L S L +P+ A ++ F+P G DIL FW + GI
Sbjct: 226 VWFDALLNYVSALDYPEGEA--YRTFWPHAWHLIGKDILKPHAVFWPTMLKAAGIPM--- 280
Query: 568 VPFSHVYLHGLIRDSQGRKMSKTLGNVIDPIDTIKEFGADALRFTISLGTA-GQDLSLSI 626
+ H+ + G + GRKMSKTLGNV+DP ++++G DALR+ + GQD +S
Sbjct: 281 --YRHLNVGGFLLGPDGRKMSKTLGNVVDPFALLEKYGRDALRYYLLREIPYGQDTPVSE 338
Query: 627 ERL 629
E L
Sbjct: 339 EAL 341
Score = 42.7 bits (99), Expect = 9e-04, Method: Compositional matrix adjust.
Identities = 37/137 (27%), Positives = 57/137 (41%), Gaps = 20/137 (14%)
Query: 92 FVISMPPPNVTGSLHMGHAMFVTLEDIMVRYHRMKGRPTLWLPGTDHAGIATQLVVEKML 151
F ++ P V H+GHA + D + R+HR+ G T +L GTD G
Sbjct: 5 FYVTTPIYYVNAEPHLGHAYTTVVADFLARWHRLDGYRTFFLTGTDEHG----------- 53
Query: 152 AAEGIKRVELSRDEFTKRVWEWKEKYGGTITSQIKRLG-ASCDWTRERFTLDEQLSRAVV 210
E + R + E K + ++ G LG A D+ R T +E+ + V
Sbjct: 54 --ETVYRAAQAAGEDPK---AFVDRVSGRFKRAWDLLGIAYDDFIR---TTEERHKKVVQ 105
Query: 211 EAFIRLHEKGLIYQGSY 227
+++E G IY G Y
Sbjct: 106 LVLKKVYEAGDIYYGEY 122
>pdb|1WOY|A Chain A, Crystal Structure Of Methionyl Trna Synthetase Y225f
Mutant From Thermus Thermophilus
pdb|2D5B|A Chain A, Crystal Structure Of Thermus Thermophilus Methionyl Trna
Synthetase Y225f Mutant Obtained In The Presence Of
Peg6000
Length = 500
Score = 65.9 bits (159), Expect = 9e-11, Method: Compositional matrix adjust.
Identities = 43/123 (34%), Positives = 62/123 (50%), Gaps = 12/123 (9%)
Query: 512 TWFSSALWPFSTLGWPDVSADDFKKFYPTTMLETGHDIL----FFWVARMVMMGIEFTGS 567
WF + L S L +P+ A ++ F+P G DIL FW + GI
Sbjct: 226 VWFDALLNYVSALDYPEGEA--YRTFWPHAWHLIGKDILKPHAVFWPTMLKAAGIPM--- 280
Query: 568 VPFSHVYLHGLIRDSQGRKMSKTLGNVIDPIDTIKEFGADALRFTISLGTA-GQDLSLSI 626
+ H+ + G + GRKMSKTLGNV+DP ++++G DALR+ + GQD +S
Sbjct: 281 --YRHLNVGGFLLGPDGRKMSKTLGNVVDPFALLEKYGRDALRYYLLREIPYGQDTPVSE 338
Query: 627 ERL 629
E L
Sbjct: 339 EAL 341
Score = 42.7 bits (99), Expect = 9e-04, Method: Compositional matrix adjust.
Identities = 37/137 (27%), Positives = 57/137 (41%), Gaps = 20/137 (14%)
Query: 92 FVISMPPPNVTGSLHMGHAMFVTLEDIMVRYHRMKGRPTLWLPGTDHAGIATQLVVEKML 151
F ++ P V H+GHA + D + R+HR+ G T +L GTD G
Sbjct: 5 FYVTTPIYYVNAEPHLGHAYTTVVADFLARWHRLDGYRTFFLTGTDEHG----------- 53
Query: 152 AAEGIKRVELSRDEFTKRVWEWKEKYGGTITSQIKRLG-ASCDWTRERFTLDEQLSRAVV 210
E + R + E K + ++ G LG A D+ R T +E+ + V
Sbjct: 54 --ETVYRAAQAAGEDPK---AFVDRVSGRFKRAWDLLGIAYDDFIR---TTEERHKKVVQ 105
Query: 211 EAFIRLHEKGLIYQGSY 227
+++E G IY G Y
Sbjct: 106 LVLKKVYEAGDIYYGEY 122
>pdb|3ZIU|A Chain A, Crystal Structure Of Mycoplasma Mobile Leucyl-trna
Synthetase With Leu-ams In The Active Site
pdb|3ZIU|B Chain B, Crystal Structure Of Mycoplasma Mobile Leucyl-trna
Synthetase With Leu-ams In The Active Site
Length = 637
Score = 64.7 bits (156), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 63/258 (24%), Positives = 109/258 (42%), Gaps = 55/258 (21%)
Query: 400 SQRGGEVIEPLVSKQWFVTMEPLAEKALHAVEKGELTIMPERFEKIYNHWLSN------- 452
S+RG + KQW + + A++ L E L P+ +K+ +W+
Sbjct: 185 SERGSFPVYKKPMKQWVLKITNYADRLL---EDLNLLDWPDSLKKLQTNWIGKEEIDGKI 241
Query: 453 ---IKDWCISRQLWWGHRIPVWYIVGKEEEYIVARNADEALEKAHQ-------------- 495
++DW +RQ +WG PV Y Y++ DE +E H
Sbjct: 242 TYKLQDWIFARQRYWGEPFPV-YFDEDNNVYLI----DELVELPHMENIMPSGTGEGPLA 296
Query: 496 ------KYGKNVEIYQ-DPDVLDTWFSSALWPFSTLGWPD----------VSADDFKKFY 538
+Y KN +I++ D + + W S + + + + + + F K+
Sbjct: 297 TNTEWVQYKKNNKIFKRDTNTMPQWAGSCWYYLAYIMKQEDGTYLPIDSKKAYEAFSKWL 356
Query: 539 PTTMLETG--HDILFFWVARM---VMMGIEFTGSV-PFSHVYLHGLIRDSQGRKMSKTLG 592
P + G H +L AR ++ ++ + PF + G+I G+KMSK+LG
Sbjct: 357 PVDLYIGGQEHAVLHLLYARFWHKILYDLKIVPTKEPFQKLINQGMILGKDGQKMSKSLG 416
Query: 593 NVIDPIDTIKEFGADALR 610
NV++P + I+ FGAD LR
Sbjct: 417 NVVNPDEIIQNFGADTLR 434
Score = 55.5 bits (132), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 48/173 (27%), Positives = 69/173 (39%), Gaps = 22/173 (12%)
Query: 75 WESQGYFKPNFERGSDPFVISMPPPNVTGSLHMGHAMFVTLEDIMVRYHRMKGRPTLWLP 134
WE FK + + + M P LH+GH T DI+ RY R+KG L
Sbjct: 22 WEKTKAFKTTNKSKDKFYALDMFPYPSGSGLHVGHPEGYTATDIISRYKRLKGFDVLHPI 81
Query: 135 GTDHAGIATQ---LVVEKMLAAEGIKRVELSRDEFTKRVWEWKEKYGGTITSQIKRLGAS 191
G D G+ + L K +K +E R Q+K LG S
Sbjct: 82 GWDAFGLPAEQYALSSGKHPQPFTLKNIENFR-------------------RQLKSLGFS 122
Query: 192 CDWTRERFTLDEQLSRAVVEAFIRLHEKGLIYQGSYMVNWSPNLQTAVSDLEV 244
D+ +E T D R F ++++KGL VNW P L T +++ E+
Sbjct: 123 FDYEKEVNTTDPSYYRWTQWIFKQIYKKGLAEIREVDVNWCPGLGTVLANEEI 175
>pdb|4DLP|A Chain A, Crystal Structure Of Methionyl-Trna Synthetase Metrs From
Brucella Melitensis Bound To Selenomethionine
pdb|4DLP|B Chain B, Crystal Structure Of Methionyl-Trna Synthetase Metrs From
Brucella Melitensis Bound To Selenomethionine
pdb|4DLP|C Chain C, Crystal Structure Of Methionyl-Trna Synthetase Metrs From
Brucella Melitensis Bound To Selenomethionine
Length = 536
Score = 63.2 bits (152), Expect = 5e-10, Method: Compositional matrix adjust.
Identities = 100/430 (23%), Positives = 168/430 (39%), Gaps = 109/430 (25%)
Query: 404 GEVIEPLVSKQWFVTMEPLAEKALHAVEKGELTIMP-ERFEKIYNHWLSNIKDWCISRQL 462
G +E + + +F + +K L E IMP ER +I + S +KD ISR
Sbjct: 174 GTPVEWVEEESYFFRLSAYQDKLLDLYENNPGFIMPAERRNEIVSFVKSGLKDLSISRTT 233
Query: 463 W-WGHRIPVWYIVGKEEEYIVARNADEALEKAHQKYGKNVEIYQDPDVLDTWFSSALWPF 521
+ WG +P G E+ V+ W +
Sbjct: 234 FDWGIPVP-----GDEKH-----------------------------VMYVWVDALTNYI 259
Query: 522 STLGWPDVSADDFKKFYPTTMLETGHDI----LFFWVARMVMMGIEFTGSVPF-SHVYLH 576
+ LG+PD + D+ ++P G DI +W A ++ + +P V+ H
Sbjct: 260 TALGYPDTT-DERWAYWPANAHIIGKDISRFHAVYWPAFLM------SAQLPLPKRVFAH 312
Query: 577 GLIRDSQGRKMSKTLGNVIDPIDTIKEFGADALR-FTISLGTAGQDLSLSIERLT--ANK 633
G + + +G KMSK++GNVIDP + ++ +G D LR F + GQD S S E + N
Sbjct: 313 GFLFN-RGEKMSKSVGNVIDPFELVERYGLDQLRYFLMREVPFGQDGSYSHEAIVNRTNA 371
Query: 634 AFTNKLWNAGK----FILQN----LPSQNDISRWEILLAYKFDEEECLCKAPLPECWVVS 685
N L N + I +N +P S + + + D + + +
Sbjct: 372 DLANDLGNLAQRSLSMIAKNCEGKVPQPGAFSEADKAILDQADAALETARKAMDD----Q 427
Query: 686 KLHMLID---TVTASYDKYFFGDVGRETYDFFWSDFADWYIEASKARLYRSEYDSDAIIA 742
LH+ + V A ++YF G+E + +D AR+
Sbjct: 428 ALHLALGAIFAVVAEANRYF---AGQEPWALRKTD---------PARM------------ 463
Query: 743 QAVLLYIFENILK----LLHPFMPFVTEELWQSLR----KRKEALIVS---------PWP 785
+LY+ +L+ ++ PF+P E+L L KR+ A +++ P P
Sbjct: 464 -GTVLYVTAEVLRRVGIMVQPFIPQSAEKLLDILAVPADKRQFADVLASPLAGGTDLPAP 522
Query: 786 QTSLPRHMSA 795
Q PR++ A
Sbjct: 523 QPVFPRYVEA 532
Score = 37.7 bits (86), Expect = 0.024, Method: Compositional matrix adjust.
Identities = 38/137 (27%), Positives = 57/137 (41%), Gaps = 36/137 (26%)
Query: 99 PNVTGSLHMGHAMFVTLEDIMVRYHRMKGRPTLWLPGTDHAGIATQLVVEKMLAA---EG 155
PN G H+GHA + D M R+ R+ G +L GTD GI KML + EG
Sbjct: 36 PN--GKPHIGHAYELIATDAMARFQRLNGMDVYFLTGTDEHGI-------KMLQSARKEG 86
Query: 156 IKRVELSRDEFTKRVWEWKEKYGGTITSQIKRLG-----ASCDWTRERFTLDEQLSRAVV 210
I +L+ TS +R+ ++ D+ R + S+A+
Sbjct: 87 ITPRDLADRN----------------TSAFRRMAEVLNSSNDDYIRTSEERHYKASQAIW 130
Query: 211 EAFIRLHEKGLIYQGSY 227
+A + G IY+G Y
Sbjct: 131 QAMV---ANGDIYKGGY 144
>pdb|2X1L|A Chain A, Crystal Structure Of Mycobacterium Smegmatis
Methionyl-Trna Synthetase In Complex With Methionine And
Adenosine
pdb|2X1L|B Chain B, Crystal Structure Of Mycobacterium Smegmatis
Methionyl-Trna Synthetase In Complex With Methionine And
Adenosine
pdb|2X1L|C Chain C, Crystal Structure Of Mycobacterium Smegmatis
Methionyl-Trna Synthetase In Complex With Methionine And
Adenosine
pdb|2X1M|A Chain A, Crystal Structure Of Mycobacterium Smegmatis
Methionyl-Trna Synthetase In Complex With Methionine
Length = 524
Score = 63.2 bits (152), Expect = 6e-10, Method: Compositional matrix adjust.
Identities = 43/150 (28%), Positives = 77/150 (51%), Gaps = 14/150 (9%)
Query: 500 NVEIYQDPD-VLDTWFSSALWPFSTLGWPDVSADDFKKFYPTTMLETGHDILFF----WV 554
V + PD V+ W + + +G+PD ++ F++++P + G DI+ F W
Sbjct: 225 GVPVPDHPDHVMYVWVDALTNYLTGVGFPDTESESFRRYWPADLHMIGKDIIRFHTVYWP 284
Query: 555 ARMVMMGIEFTGSVPFSHVYLHGLIRDSQGRKMSKTLGNVIDPIDTIKEFGADALR-FTI 613
A ++ G+ + F+H +L ++G KMSK++GNV+DP++ + FG D +R F +
Sbjct: 285 AFLMSAGLPLPKRI-FAHGWLL-----NRGEKMSKSIGNVVDPVNLVDTFGLDQVRYFLL 338
Query: 614 SLGTAGQDLSLSIERLTA--NKAFTNKLWN 641
GQD S + + + N N+L N
Sbjct: 339 REVPFGQDGSYNEDAIIGRVNADLANELGN 368
Score = 42.7 bits (99), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 28/76 (36%), Positives = 37/76 (48%), Gaps = 4/76 (5%)
Query: 88 GSDPFVISMPPPNVTGSLHMGHAMFVTLEDIMVRYHRMKGRPTLWLPGTDHAGIATQLVV 147
GS+PF I+ G H+GHA D + R+ R+ G +L GTD G Q +
Sbjct: 10 GSEPFYITTAIAYPNGVPHIGHAYEYIATDAIARFKRLDGYDVRYLTGTDVHG---QKMA 66
Query: 148 EKMLAAEGIKRVELSR 163
E A EGI EL+R
Sbjct: 67 ETA-AKEGIPAAELAR 81
>pdb|3O0A|A Chain A, Crystal Structure Of The Wild Type Cp1 Hydrolitic Domain
From Aquifex Aeolicus Leucyl-Trna
pdb|3O0A|B Chain B, Crystal Structure Of The Wild Type Cp1 Hydrolitic Domain
From Aquifex Aeolicus Leucyl-Trna
Length = 219
Score = 55.5 bits (132), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 37/120 (30%), Positives = 57/120 (47%), Gaps = 13/120 (10%)
Query: 288 QDEHYSQFIGMMAIVPMTYGRHVPIISDKYVDKEFGTGVLKISPGHDHNDYLLARKLGLP 347
+++ F+G+ A P G +P+ S YV E+GTG + P HD D+ A+K LP
Sbjct: 101 EEDKEGVFLGVYATNPAN-GEKIPVWSANYVLYEYGTGAIMCVPAHDQRDWEFAKKYDLP 159
Query: 348 ILNVMNKDGTLNEVAGL------------FRGLDRFEARKKLWSDLEETGLAVKKEPHTL 395
I V+ +G + G F GLD A++K+ L++ GL KK + L
Sbjct: 160 IKVVVKPEGAWDFEKGAYEGKGTLVNSDGFDGLDSETAKRKITEWLQDRGLGEKKVSYRL 219
>pdb|2AJG|A Chain A, Crystal Structure Of The Editing Domain Of E. Coli Leucyl-
Trna Synthetase
pdb|2AJG|B Chain B, Crystal Structure Of The Editing Domain Of E. Coli Leucyl-
Trna Synthetase
pdb|2AJH|A Chain A, Crystal Structure Of The Editing Domain Of E. Coli Leucyl-
Trna Synthetase Complexes With Methionine
pdb|2AJH|B Chain B, Crystal Structure Of The Editing Domain Of E. Coli Leucyl-
Trna Synthetase Complexes With Methionine
pdb|2AJI|A Chain A, Crystal Structure Of The Editing Domain Of E. Coli Leucyl-
Trna Synthetase Complexes With Isoleucine
pdb|2AJI|B Chain B, Crystal Structure Of The Editing Domain Of E. Coli Leucyl-
Trna Synthetase Complexes With Isoleucine
Length = 196
Score = 55.5 bits (132), Expect = 1e-07, Method: Composition-based stats.
Identities = 51/182 (28%), Positives = 74/182 (40%), Gaps = 48/182 (26%)
Query: 256 IKYRVAGRSDFLTIATTRPETLFGDVALAV-------------NPQ-----DEHYSQFI- 296
I + V + LT+ TTRP+T G LAV NP+ DE + +
Sbjct: 15 ITFNVNDYDNTLTVYTTRPDTFMGCTYLAVAAGHPLAQKAAENNPELAAFIDECRNTKVA 74
Query: 297 --------------GMMAIVPMTYGRHVPIISDKYVDKEFGTGVLKISPGHDHNDYLLAR 342
G A+ P+T G +P+ + +V E+GTG + PGHD DY A
Sbjct: 75 EAEMATMEKKGVDTGFKAVHPLT-GEEIPVWAANFVLMEYGTGAVMAVPGHDQRDYEFAS 133
Query: 343 KLGLPILNV-MNKDGTLNEV-------------AGLFRGLDRFEARKKLWSDLEETGLAV 388
K GL I V + DG+ ++ +G F GLD A + L G+
Sbjct: 134 KYGLNIKPVILAADGSEPDLSQQALTEKGVLFNSGEFNGLDHEAAFNAIADKLTAMGVGE 193
Query: 389 KK 390
+K
Sbjct: 194 RK 195
>pdb|4EG1|A Chain A, Trypanosoma Brucei Methionyl-Trna Synthetase In Complex
With Substrate Methionine
pdb|4EG1|B Chain B, Trypanosoma Brucei Methionyl-Trna Synthetase In Complex
With Substrate Methionine
pdb|4EG3|A Chain A, Trypanosoma Brucei Methionyl-Trna Synthetase In Complex
With Product Methionyl-Adenylate
pdb|4EG3|B Chain B, Trypanosoma Brucei Methionyl-Trna Synthetase In Complex
With Product Methionyl-Adenylate
pdb|4EG6|A Chain A, Trypanosoma Brucei Methionyl-Trna Synthetase In Complex
With Inhibitor Chem 1325
pdb|4EG6|B Chain B, Trypanosoma Brucei Methionyl-Trna Synthetase In Complex
With Inhibitor Chem 1325
pdb|4EG8|A Chain A, Trypanosoma Brucei Methionyl-Trna Synthetase In Complex
With Compound Chem 89
pdb|4EG8|B Chain B, Trypanosoma Brucei Methionyl-Trna Synthetase In Complex
With Compound Chem 89
pdb|3U1E|A Chain A, Trypanosoma Brucei Methionyl-Trna Synthetase In Complex
With Inhibitor Chem 1387
pdb|3U1E|B Chain B, Trypanosoma Brucei Methionyl-Trna Synthetase In Complex
With Inhibitor Chem 1387
pdb|3U1F|A Chain A, Trypanosoma Brucei Methionyl-Trna Synthetase In Complex
With Inhibitor Chem 1392
pdb|3U1F|B Chain B, Trypanosoma Brucei Methionyl-Trna Synthetase In Complex
With Inhibitor Chem 1392
pdb|3U1G|A Chain A, Trypanosoma Brucei Methionyl-Trna Synthetase In Complex
With Inhibitor Chem 1415
pdb|3U1G|B Chain B, Trypanosoma Brucei Methionyl-Trna Synthetase In Complex
With Inhibitor Chem 1415
pdb|3U20|A Chain A, Trypanosoma Brucei Methionyl-Trna Synthetase In Complex
With Inhibitor Chem 1444
pdb|3U20|B Chain B, Trypanosoma Brucei Methionyl-Trna Synthetase In Complex
With Inhibitor Chem 1444
Length = 542
Score = 55.1 bits (131), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 39/138 (28%), Positives = 61/138 (44%), Gaps = 22/138 (15%)
Query: 92 FVISMPPPNVTGSLHMGHAMFVTLEDIMVRYHRMKGRPTLWLPGTDHAGIATQLVVEKML 151
F ++ P V + H+GH + D++ RYHR+KG L GTD G
Sbjct: 11 FFVTSPIYYVNAAPHIGHVYSTLITDVIGRYHRVKGERVFALTGTDEHG---------QK 61
Query: 152 AAEGIKRVELSRDEFTKRVWEWKEKYGGTITSQIKRLGASCDWTRERF--TLDEQLSRAV 209
AE K+ ++S +FT + + K+ D++ + F T +EQ V
Sbjct: 62 VAEAAKQKQVSPYDFTT-----------AVAGEFKKCFEQMDYSIDYFIRTTNEQHKAVV 110
Query: 210 VEAFIRLHEKGLIYQGSY 227
E + +L +KG IY G Y
Sbjct: 111 KELWTKLEQKGDIYLGRY 128
Score = 43.9 bits (102), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 29/86 (33%), Positives = 45/86 (52%), Gaps = 12/86 (13%)
Query: 532 DDFKKF--YPTTMLETGHDILFF----WVARMVMMGIEFTGSVPFSHVYLHGLIRDSQGR 585
DDF + +P + G DIL F W A ++ G+ + HG + +
Sbjct: 269 DDFNELERFPADVHVIGKDILKFHAIYWPAFLLSAGLPLP-----KKIVAHGWWTKDR-K 322
Query: 586 KMSKTLGNVIDPIDTIKEFGADALRF 611
K+SK+LGNV DP++ +EFG DAL++
Sbjct: 323 KISKSLGNVFDPVEKAEEFGYDALKY 348
>pdb|4EG5|A Chain A, Trypanosoma Brucei Methionyl-Trna Synthetase In Complex
With Inhibitor Chem 1312
pdb|4EG5|B Chain B, Trypanosoma Brucei Methionyl-Trna Synthetase In Complex
With Inhibitor Chem 1312
Length = 542
Score = 55.1 bits (131), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 39/138 (28%), Positives = 61/138 (44%), Gaps = 22/138 (15%)
Query: 92 FVISMPPPNVTGSLHMGHAMFVTLEDIMVRYHRMKGRPTLWLPGTDHAGIATQLVVEKML 151
F ++ P V + H+GH + D++ RYHR+KG L GTD G
Sbjct: 11 FFVTSPIYYVNAAPHIGHVYSTLITDVIGRYHRVKGERVFALTGTDEHG---------QK 61
Query: 152 AAEGIKRVELSRDEFTKRVWEWKEKYGGTITSQIKRLGASCDWTRERF--TLDEQLSRAV 209
AE K+ ++S +FT + + K+ D++ + F T +EQ V
Sbjct: 62 VAEAAKQKQVSPYDFTT-----------AVAGEFKKCFEQMDYSIDYFIRTTNEQHKAVV 110
Query: 210 VEAFIRLHEKGLIYQGSY 227
E + +L +KG IY G Y
Sbjct: 111 KELWTKLEQKGDIYLGRY 128
Score = 43.9 bits (102), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 29/86 (33%), Positives = 45/86 (52%), Gaps = 12/86 (13%)
Query: 532 DDFKKF--YPTTMLETGHDILFF----WVARMVMMGIEFTGSVPFSHVYLHGLIRDSQGR 585
DDF + +P + G DIL F W A ++ G+ + HG + +
Sbjct: 269 DDFNELERFPADVHVIGKDILKFHAIYWPAFLLSAGLPLP-----KKIVAHGWWTKDR-K 322
Query: 586 KMSKTLGNVIDPIDTIKEFGADALRF 611
K+SK+LGNV DP++ +EFG DAL++
Sbjct: 323 KISKSLGNVFDPVEKAEEFGYDALKY 348
>pdb|3PZ0|A Chain A, The Crystal Structure Of Aaleurs-Cp1
pdb|3PZ0|B Chain B, The Crystal Structure Of Aaleurs-Cp1
pdb|3PZ0|C Chain C, The Crystal Structure Of Aaleurs-Cp1
pdb|3PZ0|D Chain D, The Crystal Structure Of Aaleurs-Cp1
Length = 221
Score = 55.1 bits (131), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 36/115 (31%), Positives = 55/115 (47%), Gaps = 13/115 (11%)
Query: 288 QDEHYSQFIGMMAIVPMTYGRHVPIISDKYVDKEFGTGVLKISPGHDHNDYLLARKLGLP 347
+++ F+G+ A P G +P+ S YV E+GTG + P HD D+ A+K LP
Sbjct: 107 EEDKEGVFLGVYATNPAN-GEKIPVWSANYVLYEYGTGAIMCVPAHDQRDWEFAKKYDLP 165
Query: 348 ILNVMNKDGTLNEVAGL------------FRGLDRFEARKKLWSDLEETGLAVKK 390
I V+ +G + G F GLD A++K+ L++ GL KK
Sbjct: 166 IKVVVKPEGAWDFEKGAYEGKGTLVNSDGFDGLDSETAKRKITEWLQDRGLGEKK 220
>pdb|3PZ5|A Chain A, The Crystal Structure Of Aaleurs-Cp1-D20
pdb|3PZ5|B Chain B, The Crystal Structure Of Aaleurs-Cp1-D20
Length = 201
Score = 55.1 bits (131), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 36/115 (31%), Positives = 55/115 (47%), Gaps = 13/115 (11%)
Query: 288 QDEHYSQFIGMMAIVPMTYGRHVPIISDKYVDKEFGTGVLKISPGHDHNDYLLARKLGLP 347
+++ F+G+ A P G +P+ S YV E+GTG + P HD D+ A+K LP
Sbjct: 87 EEDKEGVFLGVYATNPAN-GEKIPVWSANYVLYEYGTGAIMCVPAHDQRDWEFAKKYDLP 145
Query: 348 ILNVMNKDGTLNEVAGL------------FRGLDRFEARKKLWSDLEETGLAVKK 390
I V+ +G + G F GLD A++K+ L++ GL KK
Sbjct: 146 IKVVVKPEGAWDFEKGAYEGKGTLVNSDGFDGLDSETAKRKITEWLQDRGLGEKK 200
>pdb|3TUN|A Chain A, Trypanosoma Brucei Methionyl-Trna Synthetase In Complex
With Inhibitor Chem 1356
pdb|3TUN|B Chain B, Trypanosoma Brucei Methionyl-Trna Synthetase In Complex
With Inhibitor Chem 1356
pdb|4EG4|A Chain A, Trypanosoma Brucei Methionyl-Trna Synthetase In Complex
With Inhibitor Chem 1289
pdb|4EG4|B Chain B, Trypanosoma Brucei Methionyl-Trna Synthetase In Complex
With Inhibitor Chem 1289
pdb|4EG7|A Chain A, Trypanosoma Brucei Methionyl-Trna Synthetase In Complex
With Inhibitor Chem 1331
pdb|4EG7|B Chain B, Trypanosoma Brucei Methionyl-Trna Synthetase In Complex
With Inhibitor Chem 1331
pdb|4EGA|A Chain A, Trypanosoma Brucei Methionyl-Trna Synthetase In Complex
With Inhibitor Chem 1320
pdb|4EGA|B Chain B, Trypanosoma Brucei Methionyl-Trna Synthetase In Complex
With Inhibitor Chem 1320
pdb|3U1Z|A Chain A, Trypanosoma Brucei Methionyl-Trna Synthetase In Complex
With Inhibitor Chem 1433
pdb|3U1Z|B Chain B, Trypanosoma Brucei Methionyl-Trna Synthetase In Complex
With Inhibitor Chem 1433
Length = 542
Score = 54.7 bits (130), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 39/138 (28%), Positives = 61/138 (44%), Gaps = 22/138 (15%)
Query: 92 FVISMPPPNVTGSLHMGHAMFVTLEDIMVRYHRMKGRPTLWLPGTDHAGIATQLVVEKML 151
F ++ P V + H+GH + D++ RYHR+KG L GTD G
Sbjct: 11 FFVTSPIYYVNAAPHIGHVYSTLITDVIGRYHRVKGERVFALTGTDEHG---------QK 61
Query: 152 AAEGIKRVELSRDEFTKRVWEWKEKYGGTITSQIKRLGASCDWTRERF--TLDEQLSRAV 209
AE K+ ++S +FT + + K+ D++ + F T +EQ V
Sbjct: 62 VAEAAKQKQVSPYDFTT-----------AVAGEFKKXFEQMDYSIDYFIRTTNEQHKAVV 110
Query: 210 VEAFIRLHEKGLIYQGSY 227
E + +L +KG IY G Y
Sbjct: 111 KELWTKLEQKGDIYLGRY 128
Score = 43.9 bits (102), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 29/86 (33%), Positives = 45/86 (52%), Gaps = 12/86 (13%)
Query: 532 DDFKKF--YPTTMLETGHDILFF----WVARMVMMGIEFTGSVPFSHVYLHGLIRDSQGR 585
DDF + +P + G DIL F W A ++ G+ + HG + +
Sbjct: 269 DDFNELERFPADVHVIGKDILKFHAIYWPAFLLSAGLPLP-----KKIVAHGWWTKDR-K 322
Query: 586 KMSKTLGNVIDPIDTIKEFGADALRF 611
K+SK+LGNV DP++ +EFG DAL++
Sbjct: 323 KISKSLGNVFDPVEKAEEFGYDALKY 348
>pdb|2CSX|A Chain A, Crystal Structure Of Aquifex Aeolicus Methionyl-Trna
Synthetase Complexed With Trna(Met)
pdb|2CSX|B Chain B, Crystal Structure Of Aquifex Aeolicus Methionyl-Trna
Synthetase Complexed With Trna(Met)
pdb|2CT8|A Chain A, Crystal Structure Of Aquifex Aeolicus Methionyl-Trna
Synthetase Complexed With Trna(Met) And
Methionyl-Adenylate Anologue
pdb|2CT8|B Chain B, Crystal Structure Of Aquifex Aeolicus Methionyl-Trna
Synthetase Complexed With Trna(Met) And
Methionyl-Adenylate Anologue
Length = 497
Score = 54.3 bits (129), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 44/140 (31%), Positives = 67/140 (47%), Gaps = 24/140 (17%)
Query: 506 DPD-VLDTWFSSALWPFSTLGWPDVSADDFKKFYPTTMLETGHDILFF----WVARMVMM 560
DP+ + WF + S L D + ++P + G DIL F W A ++ +
Sbjct: 222 DPEHTIYVWFDALFNYISAL------EDKVEIYWPADLHLVGKDILRFHTVYWPAFLMSL 275
Query: 561 GIEFTGSVPFSHVYLHGLIRDSQGRKMSKTLGNVIDPIDTIKEFGADALR-FTISLGTAG 619
G E V F+H + +G+KMSKTLGNV+DP + ++E+G D +R F + G
Sbjct: 276 GYELPKKV-FAHGWW-----TVEGKKMSKTLGNVVDPYEVVQEYGLDEVRYFLLREVPFG 329
Query: 620 QDLSLSIERLTANKAFTNKL 639
QD S KA N++
Sbjct: 330 QDGDFS------KKAILNRI 343
Score = 45.8 bits (107), Expect = 9e-05, Method: Compositional matrix adjust.
Identities = 36/138 (26%), Positives = 58/138 (42%), Gaps = 22/138 (15%)
Query: 92 FVISMPPPNVTGSLHMGHAMFVTLEDIMVRYHRMKGRPTLWLPGTDHAGIATQLVVEKML 151
F ++ P V H+GHA D + RY+R++ +L GTD G+ Q E++
Sbjct: 7 FYVTTPIYYVNDVPHLGHAYTTIAADTIARYYRLRDYDVFFLTGTDEHGLKIQKKAEEL- 65
Query: 152 AAEGIKRVEL--SRDEFTKRVWEWKEKYGGTITSQIKRLGASCDWTRERFTLDEQLSRAV 209
GI EL E K++WE+ ++T+ T D + V
Sbjct: 66 ---GISPKELVDRNAERFKKLWEF----------------LKIEYTKFIRTTDPYHVKFV 106
Query: 210 VEAFIRLHEKGLIYQGSY 227
+ F +++G IY G Y
Sbjct: 107 QKVFEECYKRGDIYLGEY 124
>pdb|1WNY|A Chain A, Isoleucyl-Trna Synthetase Editing Domain
pdb|1WNY|B Chain B, Isoleucyl-Trna Synthetase Editing Domain
pdb|1WNZ|A Chain A, Isoleucyl-Trna Synthetase Editing Domain Complexed With
The Post-Transfer Editing Substrate Analogue, Val-2aa
Length = 186
Score = 47.8 bits (112), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 43/159 (27%), Positives = 68/159 (42%), Gaps = 36/159 (22%)
Query: 267 LTIATTRPETLFGDVALAVNPQDEHYSQFIGMMAIV------------------------ 302
L I TT P TL G+VA AV+P+ + + +G A++
Sbjct: 25 LLIWTTTPWTLPGNVAAAVHPEYTYAAFQVGDEALILEEGLGRKLLGEGTPVLKTFPGKA 84
Query: 303 ----------PMTYGRHVPIISDKYVDKEFGTGVLKISPGHDHNDYLLARKLGLPILNVM 352
P + ++ YV +E GTG++ +P D AR GLP+L +
Sbjct: 85 LEGLPYTPPYPQALEKGYFVVLADYVSQEDGTGIVHQAPAFGAEDLETARVYGLPLLKTV 144
Query: 353 NKDGTLNEVAGLFRGLDRFEARKKLWSDLEETGLAVKKE 391
+++G L + F+GL EA + + DL GL K+E
Sbjct: 145 DEEGKL--LVEPFKGLYFREANRAILRDLRGRGLLFKEE 181
>pdb|1WK8|A Chain A, Isoleucyl-Trna Synthetase Editing Domain Complexed With
The Pre-Transfer Editing Substrate Analogue, Val-Ams
pdb|1WK8|B Chain B, Isoleucyl-Trna Synthetase Editing Domain Complexed With
The Pre-Transfer Editing Substrate Analogue, Val-Ams
Length = 194
Score = 47.8 bits (112), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 44/166 (26%), Positives = 70/166 (42%), Gaps = 36/166 (21%)
Query: 267 LTIATTRPETLFGDVALAVNPQDEHYSQFIGMMAIV------------------------ 302
L I TT P TL G+VA AV+P+ + + +G A++
Sbjct: 30 LLIWTTTPWTLPGNVAAAVHPEYTYAAFQVGDEALILEEGLGRKLLGEGTPVLKTFPGKA 89
Query: 303 ----------PMTYGRHVPIISDKYVDKEFGTGVLKISPGHDHNDYLLARKLGLPILNVM 352
P + ++ YV +E GTG++ +P D AR GLP+L +
Sbjct: 90 LEGLPYTPPYPQALEKGYFVVLADYVSQEDGTGIVHQAPAFGAEDLETARVYGLPLLKTV 149
Query: 353 NKDGTLNEVAGLFRGLDRFEARKKLWSDLEETGLAVKKEPHTLRVP 398
+++G L + F+GL EA + + DL GL K+E + P
Sbjct: 150 DEEGKL--LVEPFKGLYFREANRAILRDLRGRGLLFKEESYLHSYP 193
>pdb|1UE0|A Chain A, Isoleucyl-Trna Synthetase Editing Domain Complexed With L-
Valine
pdb|1UE0|B Chain B, Isoleucyl-Trna Synthetase Editing Domain Complexed With L-
Valine
Length = 182
Score = 46.2 bits (108), Expect = 6e-05, Method: Compositional matrix adjust.
Identities = 42/159 (26%), Positives = 67/159 (42%), Gaps = 36/159 (22%)
Query: 267 LTIATTRPETLFGDVALAVNPQDEHYSQFIGMMAIV------------------------ 302
L I TT P TL G+VA AV+P+ + + +G A++
Sbjct: 25 LLIWTTTPWTLPGNVAAAVHPEYTYAAFQVGDEALILEEGLGRKLLGEGTQVLKTFPGKA 84
Query: 303 ----------PMTYGRHVPIISDKYVDKEFGTGVLKISPGHDHNDYLLARKLGLPILNVM 352
P + ++ YV +E GTG++ +P D AR GLP+L +
Sbjct: 85 LEGLPYTPPYPQALEKGYFVVLADYVSQEDGTGIVHQAPAFGAEDLETARVYGLPLLKTV 144
Query: 353 NKDGTLNEVAGLFRGLDRFEARKKLWSDLEETGLAVKKE 391
+++G L + F+GL EA + + DL G K+E
Sbjct: 145 DEEGKL--LVEPFKGLYFREANRAILRDLRGRGFLFKEE 181
>pdb|1UDZ|A Chain A, Isoleucyl-Trna Synthetase Editing Domain
pdb|1UDZ|B Chain B, Isoleucyl-Trna Synthetase Editing Domain
Length = 182
Score = 46.2 bits (108), Expect = 7e-05, Method: Compositional matrix adjust.
Identities = 42/159 (26%), Positives = 67/159 (42%), Gaps = 36/159 (22%)
Query: 267 LTIATTRPETLFGDVALAVNPQDEHYSQFIGMMAIV------------------------ 302
L I TT P TL G+VA AV+P+ + + +G A++
Sbjct: 25 LLIWTTTPWTLPGNVAAAVHPEYTYAAFQVGDEALILEEGLGRKLLGEGTPVLKTFPGKA 84
Query: 303 ----------PMTYGRHVPIISDKYVDKEFGTGVLKISPGHDHNDYLLARKLGLPILNVM 352
P + ++ YV +E GTG++ +P D AR GLP+L +
Sbjct: 85 LEGLPYTPPYPQALEKGYFVVLADYVSQEDGTGIVHQAPAFGAEDLETARVYGLPLLKTV 144
Query: 353 NKDGTLNEVAGLFRGLDRFEARKKLWSDLEETGLAVKKE 391
+++G L + F+GL EA + + DL G K+E
Sbjct: 145 DEEGKL--LVEPFKGLYFREANRAILRDLRGRGFLFKEE 181
>pdb|3KFL|A Chain A, Leishmania Major Methionyl-Trna Synthetase In Complex With
Methionyladenylate And Pyrophosphate
Length = 564
Score = 43.9 bits (102), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 38/154 (24%), Positives = 65/154 (42%), Gaps = 25/154 (16%)
Query: 76 ESQGYFKPNFERGSDPFVISMPPPNVTGSLHMGHAMFVTLEDIMVRYHRMKGRPTLWLPG 135
++QG P + F + P V S H+GH + D++ RYHR+KG + G
Sbjct: 15 QTQG---PGSMKKQKVFFATTPIYYVNASPHIGHVYSTLIVDVLGRYHRVKGEEVFVMTG 71
Query: 136 TDHAGIATQLVVEKMLAAEGIKRVELSRDEFTKRVWEWKEKYGGTITSQIKRLGASCDWT 195
TD G Q V E A +G+ ++ + +++S+ K+ ++
Sbjct: 72 TDEHG---QKVAEAA-AKQGVSPMDFTT----------------SVSSEFKQCFQEMNYD 111
Query: 196 RERF--TLDEQLSRAVVEAFIRLHEKGLIYQGSY 227
F T + + V + + +L KG IY G Y
Sbjct: 112 MNYFIRTTNPTHEKLVQDIWKKLAAKGDIYLGKY 145
Score = 40.8 bits (94), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 35/120 (29%), Positives = 56/120 (46%), Gaps = 13/120 (10%)
Query: 508 DVLDTWFSSALWPFSTLGWPDVSADDFK-KFYPTTMLETGHDILFF----WVARMVMMGI 562
D L +++ AL +T G + D +P + G DIL F W A ++
Sbjct: 262 DALFNYYTGALTRVATDGTETLDEDHHALNRWPADVHVVGKDILKFHAIYWPAFLM---- 317
Query: 563 EFTGSVPF-SHVYLHGLIRDSQGRKMSKTLGNVIDPIDTIKEFGADALRFTISLGTAGQD 621
+ +P + HG +K+SK+LGN DP++ KEFG DAL++ + + QD
Sbjct: 318 --SAELPLPERLVSHGWWTKDH-KKISKSLGNAFDPVEKAKEFGIDALKYFLMRESNFQD 374
>pdb|1P7P|A Chain A, Methionyl-trna Synthetase From Escherichia Coli Complexed
With Methionine Phosphonate
pdb|1PFU|A Chain A, Methionyl-Trna Synthetase From Escherichia Coli Complexed
With Methionine Phosphinate
pdb|1PFV|A Chain A, Methionyl-Trna Synthetase From Escherichia Coli Complexed
With Difluoromethionine
pdb|1PFW|A Chain A, Methionyl-Trna Synthetase From Escherichia Coli Complexed
With Trifluoromethionine
pdb|1PFY|A Chain A, Methionyl-Trna Synthetase From Escherichia Coli Complexed
With Methionyl Sulphamoyl Adenosine
pdb|1PG0|A Chain A, Methionyl-Trna Synthetase From Escherichia Coli Complexed
With Methioninyl Adenylate
pdb|1PG2|A Chain A, Methionyl-Trna Synthetase From Escherichia Coli Complexed
With Methionine And Adenosine
Length = 551
Score = 40.0 bits (92), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 55/233 (23%), Positives = 96/233 (41%), Gaps = 38/233 (16%)
Query: 546 GHDILFF----WVARMVMMGIEFTGSVPFSHVYLHGLIRDSQGRKMSKTLGNVIDPIDTI 601
G DI++F W A ++ G F S++++HG + G KMSK+ G I +
Sbjct: 294 GKDIVYFHSLFWPA--MLEGSNFRKP---SNLFVHGYVT-VNGAKMSKSRGTFIKASTWL 347
Query: 602 KEFGADALR--FTISLGTAGQDLSLSIERLT--ANKAFTNKLWNAGKFILQNLPSQNDIS 657
F AD+LR +T L + D+ L++E N NK+ N S
Sbjct: 348 NHFDADSLRYYYTAKLSSRIDDIDLNLEDFVQRVNADIVNKVVNLA-------------S 394
Query: 658 RWEILLAYKFDEEECLCKAPLPECWVVSKLHMLIDTVTASYDKYFFGDVGRETYDFFWSD 717
R + +FD + + L + + + + +++ FG RE +D
Sbjct: 395 RNAGFINKRFD---GVLASELADPQLYKTFTDAAEVIGEAWESREFGKAVREIMAL--AD 449
Query: 718 FADWYIEASK----ARLYRSEYDSDAIIAQAVLLYIFENILKLLHPFMPFVTE 766
A+ Y++ A+ + D AI + + L F ++ L P +P +TE
Sbjct: 450 LANRYVDEQAPWVVAKQEGRDADLQAICSMGINL--FRVLMTYLKPVLPKLTE 500
Score = 38.5 bits (88), Expect = 0.016, Method: Compositional matrix adjust.
Identities = 16/58 (27%), Positives = 29/58 (50%)
Query: 93 VISMPPPNVTGSLHMGHAMFVTLEDIMVRYHRMKGRPTLWLPGTDHAGIATQLVVEKM 150
+++ P GS+H+GH + D+ VRY RM+G ++ D G L +++
Sbjct: 8 LVTCALPYANGSIHLGHMLEHIQADVWVRYQRMRGHEVNFICADDAHGTPIMLKAQQL 65
>pdb|3H97|A Chain A, Structure Of A Mutant Methionyl-trna Synthetase With
Modified Specificity
pdb|3H99|A Chain A, Structure Of A Mutant Methionyl-Trna Synthetase With
Modified Specificity Complexed With Methionine
pdb|3H9B|A Chain A, Structure Of A Mutant Methionyl-Trna Synthetase With
Modified Specificity Complexed With Azidonorleucine
Length = 560
Score = 40.0 bits (92), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 55/233 (23%), Positives = 96/233 (41%), Gaps = 38/233 (16%)
Query: 546 GHDILFF----WVARMVMMGIEFTGSVPFSHVYLHGLIRDSQGRKMSKTLGNVIDPIDTI 601
G DI++F W A ++ G F S++++HG + G KMSK+ G I +
Sbjct: 307 GKDIVYFLSLFWPA--MLEGSNFRKP---SNLFVHGYVT-VNGAKMSKSRGTFIKASTWL 360
Query: 602 KEFGADALR--FTISLGTAGQDLSLSIERLT--ANKAFTNKLWNAGKFILQNLPSQNDIS 657
F AD+LR +T L + D+ L++E N NK+ N S
Sbjct: 361 NHFDADSLRYYYTAKLSSRIDDIDLNLEDFVQRVNADIVNKVVNLA-------------S 407
Query: 658 RWEILLAYKFDEEECLCKAPLPECWVVSKLHMLIDTVTASYDKYFFGDVGRETYDFFWSD 717
R + +FD + + L + + + + +++ FG RE +D
Sbjct: 408 RNAGFINKRFD---GVLASELADPQLYKTFTDAAEVIGEAWESREFGKAVREIMAL--AD 462
Query: 718 FADWYIEASK----ARLYRSEYDSDAIIAQAVLLYIFENILKLLHPFMPFVTE 766
A+ Y++ A+ + D AI + + L F ++ L P +P +TE
Sbjct: 463 LANRYVDEQAPWVVAKQEGRDADLQAICSMGINL--FRVLMTYLKPVLPKLTE 513
Score = 39.3 bits (90), Expect = 0.009, Method: Compositional matrix adjust.
Identities = 16/58 (27%), Positives = 29/58 (50%)
Query: 93 VISMPPPNVTGSLHMGHAMFVTLEDIMVRYHRMKGRPTLWLPGTDHAGIATQLVVEKM 150
+++ P GS+H+GH + D+ VRY RM+G ++ D G L +++
Sbjct: 21 LVTCASPYANGSIHLGHMLEHIQADVWVRYQRMRGHEVNFICADDAHGTPIMLKAQQL 78
>pdb|1QQT|A Chain A, Methionyl-Trna Synthetase From Escherichia Coli
Length = 551
Score = 40.0 bits (92), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 55/233 (23%), Positives = 96/233 (41%), Gaps = 38/233 (16%)
Query: 546 GHDILFF----WVARMVMMGIEFTGSVPFSHVYLHGLIRDSQGRKMSKTLGNVIDPIDTI 601
G DI++F W A ++ G F S++++HG + G KMSK+ G I +
Sbjct: 294 GKDIVYFHSLFWPA--MLEGSNFRKP---SNLFVHGYVT-VNGAKMSKSRGTFIKASTWL 347
Query: 602 KEFGADALR--FTISLGTAGQDLSLSIERLT--ANKAFTNKLWNAGKFILQNLPSQNDIS 657
F AD+LR +T L + D+ L++E N NK+ N S
Sbjct: 348 NHFDADSLRYYYTAKLSSRIDDIDLNLEDFVQRVNADIVNKVVNLA-------------S 394
Query: 658 RWEILLAYKFDEEECLCKAPLPECWVVSKLHMLIDTVTASYDKYFFGDVGRETYDFFWSD 717
R + +FD + + L + + + + +++ FG RE +D
Sbjct: 395 RNAGFINKRFD---GVLASELADPALYKTFTDAAEVIGEAWESREFGKAVREIMAL--AD 449
Query: 718 FADWYIEASK----ARLYRSEYDSDAIIAQAVLLYIFENILKLLHPFMPFVTE 766
A+ Y++ A+ + D AI + + L F ++ L P +P +TE
Sbjct: 450 LANRYVDEQAPWVVAKQAGRDADLQAICSMGINL--FRVLMTYLKPVLPKLTE 500
Score = 38.5 bits (88), Expect = 0.017, Method: Compositional matrix adjust.
Identities = 16/58 (27%), Positives = 29/58 (50%)
Query: 93 VISMPPPNVTGSLHMGHAMFVTLEDIMVRYHRMKGRPTLWLPGTDHAGIATQLVVEKM 150
+++ P GS+H+GH + D+ VRY RM+G ++ D G L +++
Sbjct: 8 LVTCALPYANGSIHLGHMLEHIQADVWVRYQRMRGHEVNFICADDAHGTPIMLKAQQL 65
>pdb|1F4L|A Chain A, Crystal Structure Of The E.Coli Methionyl-Trna Synthetase
Complexed With Methionine
Length = 551
Score = 40.0 bits (92), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 55/233 (23%), Positives = 96/233 (41%), Gaps = 38/233 (16%)
Query: 546 GHDILFF----WVARMVMMGIEFTGSVPFSHVYLHGLIRDSQGRKMSKTLGNVIDPIDTI 601
G DI++F W A ++ G F S++++HG + G KMSK+ G I +
Sbjct: 295 GKDIVYFHSLFWPA--MLEGSNFRKP---SNLFVHGYVT-VNGAKMSKSRGTFIKASTWL 348
Query: 602 KEFGADALR--FTISLGTAGQDLSLSIERLT--ANKAFTNKLWNAGKFILQNLPSQNDIS 657
F AD+LR +T L + D+ L++E N NK+ N S
Sbjct: 349 NHFDADSLRYYYTAKLSSRIDDIDLNLEDFVQRVNADIVNKVVNLA-------------S 395
Query: 658 RWEILLAYKFDEEECLCKAPLPECWVVSKLHMLIDTVTASYDKYFFGDVGRETYDFFWSD 717
R + +FD + + L + + + + +++ FG RE +D
Sbjct: 396 RNAGFINKRFD---GVLASELADPQLYKTFTDAAEVIGEAWESREFGKAVREIMAL--AD 450
Query: 718 FADWYIEASK----ARLYRSEYDSDAIIAQAVLLYIFENILKLLHPFMPFVTE 766
A+ Y++ A+ + D AI + + L F ++ L P +P +TE
Sbjct: 451 LANRYVDEQAPWVVAKQEGRDADLQAICSMGINL--FRVLMTYLKPVLPKLTE 501
Score = 38.5 bits (88), Expect = 0.017, Method: Compositional matrix adjust.
Identities = 16/58 (27%), Positives = 29/58 (50%)
Query: 93 VISMPPPNVTGSLHMGHAMFVTLEDIMVRYHRMKGRPTLWLPGTDHAGIATQLVVEKM 150
+++ P GS+H+GH + D+ VRY RM+G ++ D G L +++
Sbjct: 9 LVTCALPYANGSIHLGHMLEHIQADVWVRYQRMRGHEVNFICADDAHGTPIMLKAQQL 66
>pdb|3H9C|A Chain A, Structure Of Methionyl-Trna Synthetase: Crystal Form 2
Length = 547
Score = 40.0 bits (92), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 55/233 (23%), Positives = 96/233 (41%), Gaps = 38/233 (16%)
Query: 546 GHDILFF----WVARMVMMGIEFTGSVPFSHVYLHGLIRDSQGRKMSKTLGNVIDPIDTI 601
G DI++F W A ++ G F S++++HG + G KMSK+ G I +
Sbjct: 294 GKDIVYFHSLFWPA--MLEGSNFRKP---SNLFVHGYVT-VNGAKMSKSRGTFIKASTWL 347
Query: 602 KEFGADALR--FTISLGTAGQDLSLSIERLT--ANKAFTNKLWNAGKFILQNLPSQNDIS 657
F AD+LR +T L + D+ L++E N NK+ N S
Sbjct: 348 NHFDADSLRYYYTAKLSSRIDDIDLNLEDFVQRVNADIVNKVVNLA-------------S 394
Query: 658 RWEILLAYKFDEEECLCKAPLPECWVVSKLHMLIDTVTASYDKYFFGDVGRETYDFFWSD 717
R + +FD + + L + + + + +++ FG RE +D
Sbjct: 395 RNAGFINKRFD---GVLASELADPQLYKTFTDAAEVIGEAWESREFGKAVREIMAL--AD 449
Query: 718 FADWYIEASK----ARLYRSEYDSDAIIAQAVLLYIFENILKLLHPFMPFVTE 766
A+ Y++ A+ + D AI + + L F ++ L P +P +TE
Sbjct: 450 LANRYVDEQAPWVVAKQEGRDADLQAICSMGINL--FRVLMTYLKPVLPKLTE 500
Score = 38.5 bits (88), Expect = 0.016, Method: Compositional matrix adjust.
Identities = 16/58 (27%), Positives = 29/58 (50%)
Query: 93 VISMPPPNVTGSLHMGHAMFVTLEDIMVRYHRMKGRPTLWLPGTDHAGIATQLVVEKM 150
+++ P GS+H+GH + D+ VRY RM+G ++ D G L +++
Sbjct: 8 LVTCALPYANGSIHLGHMLEHIQADVWVRYQRMRGHEVNFICADDAHGTPIMLKAQQL 65
>pdb|1RQG|A Chain A, Methionyl-Trna Synthetase From Pyrococcus Abyssi
Length = 722
Score = 38.1 bits (87), Expect = 0.022, Method: Compositional matrix adjust.
Identities = 18/50 (36%), Positives = 27/50 (54%), Gaps = 1/50 (2%)
Query: 92 FVISMPPPNVTGSLHMGHAMFVTL-EDIMVRYHRMKGRPTLWLPGTDHAG 140
++++ P G +H GH L DI VRY R+KG +++ GTD G
Sbjct: 4 YMVTSALPYANGPIHAGHLAGAYLPADIFVRYLRLKGEDVVFICGTDEHG 53
>pdb|3TQO|A Chain A, Structure Of The Cysteinyl-Trna Synthetase (Cyss) From
Coxiella Burnetii
Length = 462
Score = 35.4 bits (80), Expect = 0.13, Method: Compositional matrix adjust.
Identities = 25/86 (29%), Positives = 40/86 (46%), Gaps = 4/86 (4%)
Query: 569 PFSHVYLHGLIRDSQGRKMSKTLGNVIDPIDTIKEFGADALRFTISLGTAGQDLSLSIER 628
PF ++ H + + K SK+LGN+I + +KE + LR+ + G LS S E
Sbjct: 252 PFVKLWXHAGLLEINKEKXSKSLGNIISIREALKESDVEVLRYFLLSGHYRNPLSYSKEN 311
Query: 629 LTANKAFTNKLWNAGKFILQNLPSQN 654
L + + + A L+ LP N
Sbjct: 312 LENGRLALERFYLA----LRGLPVVN 333
>pdb|3FNR|A Chain A, Crystal Structure Of Putative Arginyl T-Rna Synthetase
From Campylobacter Jejuni
Length = 464
Score = 35.0 bits (79), Expect = 0.17, Method: Compositional matrix adjust.
Identities = 16/34 (47%), Positives = 22/34 (64%)
Query: 578 LIRDSQGRKMSKTLGNVIDPIDTIKEFGADALRF 611
L++D + KMSK GN I D + E G+DALR+
Sbjct: 277 LLKDGEPYKMSKRAGNFILMSDVVDEIGSDALRY 310
Score = 32.7 bits (73), Expect = 0.90, Method: Compositional matrix adjust.
Identities = 23/74 (31%), Positives = 31/74 (41%), Gaps = 12/74 (16%)
Query: 58 TLPKTFDFTSEERIYNWWESQGYFKPN-FERG---SDPFVISMPPPNVTGSLHMGHAMFV 113
+L KTF N +Q PN F +G + F++ N TG LH+GHA
Sbjct: 2 SLSKTF--------LNELANQALTNPNDFTKGEKKQESFLLEYVSANPTGPLHIGHARGA 53
Query: 114 TLEDIMVRYHRMKG 127
D + R R G
Sbjct: 54 VFGDTLTRLARHLG 67
>pdb|1LI5|A Chain A, Crystal Structure Of Cysteinyl-Trna Synthetase
pdb|1LI5|B Chain B, Crystal Structure Of Cysteinyl-Trna Synthetase
pdb|1LI7|A Chain A, Crystal Structure Of Cysteinyl-Trna Synthetase With
Cysteine Substrate Bound
pdb|1LI7|B Chain B, Crystal Structure Of Cysteinyl-Trna Synthetase With
Cysteine Substrate Bound
pdb|1U0B|B Chain B, Crystal Structure Of Cysteinyl-Trna Synthetase Binary
Complex With Trnacys
Length = 461
Score = 33.9 bits (76), Expect = 0.33, Method: Compositional matrix adjust.
Identities = 19/57 (33%), Positives = 30/57 (52%)
Query: 586 KMSKTLGNVIDPIDTIKEFGADALRFTISLGTAGQDLSLSIERLTANKAFTNKLWNA 642
KMSK+LGN D +K + A+ +R+ + G L+ S E L +A +L+ A
Sbjct: 266 KMSKSLGNFFTVRDVLKYYDAETVRYFLMSGHYRSQLNYSEENLKQARAALERLYTA 322
>pdb|2WBN|A Chain A, Crystal Structure Of The G2p (Large Terminase) Nuclease
Domain From The Bacteriophage Spp1
pdb|2WC9|A Chain A, Crystal Structure Of The G2p (Large Terminase) Nuclease
Domain From The Bacteriophage Spp1 With Bound Mn
Length = 212
Score = 30.0 bits (66), Expect = 5.9, Method: Composition-based stats.
Identities = 14/53 (26%), Positives = 27/53 (50%), Gaps = 9/53 (16%)
Query: 18 YRLNPLLFSKRQRCMKLPHWHFNRTKQRFFAVAAAENNKDTLPKTFDFTSEER 70
Y +PL F + WH+++ K R +A+ ++K +L +T DF + +
Sbjct: 59 YGPDPLAFVR---------WHYDKRKNRIYAIDELVDHKVSLKRTADFVRKNK 102
>pdb|3LFM|A Chain A, Crystal Structure Of The Fat Mass And Obesity Associated
(Fto) Protein Reveals Basis For Its Substrate
Specificity
Length = 495
Score = 29.6 bits (65), Expect = 7.3, Method: Compositional matrix adjust.
Identities = 20/66 (30%), Positives = 35/66 (53%), Gaps = 5/66 (7%)
Query: 196 RERFTLDEQLSRAVVEAFIRLHEKGLIYQGSYMVNWSPNLQTAVSDLEVEYSEEPGTLY- 254
RE ++ E+L + V EAF+ LH+ G +++ + +L T VS + + PG Y
Sbjct: 42 REASSVSEELHKEVQEAFLTLHKHGCLFRDLVRIQ-GKDLLTPVSRILI---GNPGCTYK 97
Query: 255 YIKYRV 260
Y+ R+
Sbjct: 98 YLNTRL 103
>pdb|3TQ6|A Chain A, Crystal Structure Of Human Mitochondrial Transcription
Factor A, Tfam Or Mttfa, Bound To The Light Strand
Promoter Lsp
pdb|3TQ6|B Chain B, Crystal Structure Of Human Mitochondrial Transcription
Factor A, Tfam Or Mttfa, Bound To The Light Strand
Promoter Lsp
Length = 214
Score = 29.3 bits (64), Expect = 9.5, Method: Compositional matrix adjust.
Identities = 37/138 (26%), Positives = 61/138 (44%), Gaps = 19/138 (13%)
Query: 322 FGTGVLKISPGHDHNDYLLARKLGLPILNVMNKDGTLNE----VAGLFRGLDRFEARKKL 377
G+ VL P + YL K LPI N D E +A +R L +++KK+
Sbjct: 1 MGSSVLASCPKKPVSSYLRFSKEQLPIFKAQNPDAKTTELIRRIAQRWRELP--DSKKKI 58
Query: 378 WSDLEETGLAVKKEPHTLRVPRSQRGGEVIEP--LVSKQWFVTMEPLAEKALHAVEKGEL 435
+ D V KE + R E + P ++S + + + L KA+ +K EL
Sbjct: 59 YQDAYRAEWQVYKEEIS-------RFKEQLTPSQIMSLEKEIMDKHLKRKAM--TKKKEL 109
Query: 436 TIM--PERFEKIYNHWLS 451
T++ P+R YN +++
Sbjct: 110 TLLGKPKRPRSAYNVYVA 127
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.322 0.137 0.430
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 25,600,279
Number of Sequences: 62578
Number of extensions: 1142105
Number of successful extensions: 2917
Number of sequences better than 100.0: 42
Number of HSP's better than 100.0 without gapping: 39
Number of HSP's successfully gapped in prelim test: 3
Number of HSP's that attempted gapping in prelim test: 2780
Number of HSP's gapped (non-prelim): 95
length of query: 809
length of database: 14,973,337
effective HSP length: 107
effective length of query: 702
effective length of database: 8,277,491
effective search space: 5810798682
effective search space used: 5810798682
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 55 (25.8 bits)