Query 003578
Match_columns 809
No_of_seqs 298 out of 2203
Neff 8.0
Searched_HMMs 46136
Date Fri Mar 29 02:04:58 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/003578.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/003578hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 COG0525 ValS Valyl-tRNA synthe 100.0 1E-188 2E-193 1611.5 72.3 730 59-809 1-734 (877)
2 PLN02943 aminoacyl-tRNA ligase 100.0 5E-171 1E-175 1545.3 78.2 755 51-809 49-806 (958)
3 KOG0432 Valyl-tRNA synthetase 100.0 2E-171 5E-176 1425.4 62.8 740 55-809 38-848 (995)
4 PLN02381 valyl-tRNA synthetase 100.0 9E-168 2E-172 1523.0 74.1 739 57-809 94-913 (1066)
5 PTZ00419 valyl-tRNA synthetase 100.0 7E-167 2E-171 1525.6 75.6 748 55-809 20-844 (995)
6 PRK05729 valS valyl-tRNA synth 100.0 2E-166 5E-171 1505.9 74.3 723 57-809 3-730 (874)
7 TIGR00422 valS valyl-tRNA synt 100.0 8E-166 2E-170 1502.4 77.0 732 59-809 1-736 (861)
8 PRK14900 valS valyl-tRNA synth 100.0 9E-164 2E-168 1491.2 73.1 733 55-809 11-755 (1052)
9 PRK06039 ileS isoleucyl-tRNA s 100.0 5E-162 1E-166 1475.6 76.2 738 57-809 5-810 (975)
10 COG0060 IleS Isoleucyl-tRNA sy 100.0 5E-162 1E-166 1408.4 62.0 733 53-804 3-815 (933)
11 PTZ00427 isoleucine-tRNA ligas 100.0 9E-161 2E-165 1461.1 73.1 744 56-809 65-968 (1205)
12 PLN02882 aminoacyl-tRNA ligase 100.0 3E-158 7E-163 1445.7 75.5 741 60-808 5-840 (1159)
13 PRK13804 ileS isoleucyl-tRNA s 100.0 1E-157 2E-162 1429.7 75.0 732 52-805 8-841 (961)
14 PRK05743 ileS isoleucyl-tRNA s 100.0 6E-158 1E-162 1429.7 71.1 730 52-805 3-803 (912)
15 PRK13208 valS valyl-tRNA synth 100.0 3E-155 7E-160 1400.0 75.8 725 56-808 3-739 (800)
16 PLN02843 isoleucyl-tRNA synthe 100.0 4E-155 8E-160 1406.4 73.2 719 64-805 4-836 (974)
17 TIGR00392 ileS isoleucyl-tRNA 100.0 2E-153 5E-158 1395.2 72.7 735 58-808 1-828 (861)
18 PLN02959 aminoacyl-tRNA ligase 100.0 3E-135 7E-140 1241.2 71.5 713 55-808 5-912 (1084)
19 TIGR00395 leuS_arch leucyl-tRN 100.0 2E-134 3E-139 1228.1 67.5 699 66-809 2-813 (938)
20 PF00133 tRNA-synt_1: tRNA syn 100.0 3E-136 6E-141 1196.6 38.0 552 70-625 1-601 (601)
21 KOG0433 Isoleucyl-tRNA synthet 100.0 2E-127 4E-132 1051.2 58.1 699 60-789 27-812 (937)
22 PLN02563 aminoacyl-tRNA ligase 100.0 7E-128 1E-132 1154.5 57.9 622 50-789 67-889 (963)
23 TIGR00396 leuS_bact leucyl-tRN 100.0 1E-127 3E-132 1152.7 58.3 613 63-789 1-774 (842)
24 PRK12300 leuS leucyl-tRNA synt 100.0 8E-127 2E-131 1156.0 60.0 655 105-809 1-767 (897)
25 PRK00390 leuS leucyl-tRNA synt 100.0 5E-126 1E-130 1137.7 59.5 605 60-789 2-737 (805)
26 KOG0434 Isoleucyl-tRNA synthet 100.0 4E-123 8E-128 1005.6 44.5 741 58-808 3-829 (1070)
27 COG0495 LeuS Leucyl-tRNA synth 100.0 7E-108 1E-112 947.7 49.5 611 61-789 3-747 (814)
28 KOG0435 Leucyl-tRNA synthetase 100.0 5E-101 1E-105 835.7 42.7 616 66-789 34-796 (876)
29 PRK12268 methionyl-tRNA synthe 100.0 4.5E-89 9.7E-94 797.8 38.6 505 90-787 3-521 (556)
30 TIGR00398 metG methionyl-tRNA 100.0 1.4E-87 2.9E-92 781.0 42.8 488 92-775 1-504 (530)
31 cd00817 ValRS_core catalytic c 100.0 5.3E-88 1.2E-92 749.1 35.6 377 90-624 1-382 (382)
32 COG0143 MetG Methionyl-tRNA sy 100.0 4.3E-87 9.3E-92 753.0 41.1 493 89-775 4-513 (558)
33 PLN02610 probable methionyl-tR 100.0 6.2E-87 1.3E-91 790.7 43.6 493 87-775 14-533 (801)
34 PRK00133 metG methionyl-tRNA s 100.0 7E-86 1.5E-90 781.0 44.3 486 90-775 2-504 (673)
35 PRK12267 methionyl-tRNA synthe 100.0 5.5E-86 1.2E-90 781.4 42.1 468 89-775 3-479 (648)
36 PLN02224 methionine-tRNA ligas 100.0 4E-83 8.7E-88 737.6 42.6 465 89-775 68-547 (616)
37 PRK11893 methionyl-tRNA synthe 100.0 3.2E-82 7E-87 735.0 41.6 467 90-775 1-477 (511)
38 KOG0437 Leucyl-tRNA synthetase 100.0 2.2E-77 4.8E-82 654.2 36.1 684 66-797 16-892 (1080)
39 cd00818 IleRS_core catalytic c 100.0 6.2E-77 1.4E-81 650.0 33.9 336 90-624 1-338 (338)
40 KOG0436 Methionyl-tRNA synthet 100.0 1.1E-71 2.4E-76 578.0 31.6 473 89-775 38-528 (578)
41 PF09334 tRNA-synt_1g: tRNA sy 100.0 9.4E-71 2E-75 609.6 17.4 374 92-647 1-391 (391)
42 cd00668 Ile_Leu_Val_MetRS_core 100.0 1.8E-67 4E-72 572.2 29.5 311 91-624 1-312 (312)
43 cd00814 MetRS_core catalytic c 100.0 7.2E-63 1.6E-67 536.7 27.3 312 91-624 1-319 (319)
44 KOG1247 Methionyl-tRNA synthet 100.0 1.6E-60 3.5E-65 494.0 17.1 495 88-775 12-521 (567)
45 cd00812 LeuRS_core catalytic c 100.0 3E-58 6.5E-63 498.7 25.6 297 91-626 1-314 (314)
46 PRK00260 cysS cysteinyl-tRNA s 100.0 5.1E-46 1.1E-50 421.9 28.2 361 79-725 14-376 (463)
47 TIGR00435 cysS cysteinyl-tRNA 100.0 9.2E-43 2E-47 394.1 24.6 358 79-714 12-371 (465)
48 PTZ00399 cysteinyl-tRNA-synthe 100.0 6.5E-41 1.4E-45 390.1 28.5 378 81-724 53-437 (651)
49 TIGR03447 mycothiol_MshC cyste 100.0 2E-41 4.4E-46 370.2 19.4 338 89-714 36-382 (411)
50 PRK14536 cysS cysteinyl-tRNA s 100.0 1.9E-40 4E-45 371.5 25.6 360 92-714 25-399 (490)
51 PRK12418 cysteinyl-tRNA synthe 100.0 1E-40 2.2E-45 363.6 21.9 340 91-723 11-362 (384)
52 PLN02946 cysteine-tRNA ligase 100.0 7.8E-40 1.7E-44 369.7 25.2 370 81-724 73-443 (557)
53 PRK14535 cysS cysteinyl-tRNA s 100.0 5.1E-39 1.1E-43 363.7 23.9 341 92-714 250-607 (699)
54 PRK14534 cysS cysteinyl-tRNA s 100.0 8.2E-38 1.8E-42 348.3 24.6 352 93-714 24-392 (481)
55 COG0215 CysS Cysteinyl-tRNA sy 100.0 1.5E-34 3.2E-39 314.7 23.6 341 93-714 25-368 (464)
56 cd00672 CysRS_core catalytic c 100.0 8.4E-34 1.8E-38 288.3 16.4 86 539-625 128-213 (213)
57 PRK01611 argS arginyl-tRNA syn 100.0 2E-31 4.3E-36 307.0 33.0 142 68-228 89-232 (507)
58 KOG2007 Cysteinyl-tRNA synthet 100.0 7.1E-30 1.5E-34 273.0 27.1 378 80-727 47-428 (586)
59 PF01406 tRNA-synt_1e: tRNA sy 100.0 9.1E-31 2E-35 272.4 14.2 287 94-633 12-299 (300)
60 cd00674 LysRS_core_class_I cat 100.0 1.6E-28 3.6E-33 265.5 22.6 125 90-224 19-151 (353)
61 TIGR00456 argS arginyl-tRNA sy 99.9 2E-24 4.3E-29 251.7 31.6 206 542-762 331-563 (566)
62 PRK00750 lysK lysyl-tRNA synth 99.9 3.6E-25 7.7E-30 253.1 19.9 127 90-224 23-157 (510)
63 cd07961 Anticodon_Ia_Ile_ABEc 99.9 3.6E-23 7.7E-28 207.6 19.6 174 624-809 1-182 (183)
64 PF13603 tRNA-synt_1_2: Leucyl 99.9 1.5E-23 3.3E-28 206.1 12.6 129 252-382 8-185 (185)
65 cd07960 Anticodon_Ia_Ile_BEm A 99.9 1.6E-22 3.6E-27 202.3 20.1 174 624-808 1-178 (180)
66 COG0018 ArgS Arginyl-tRNA synt 99.9 7.3E-21 1.6E-25 217.9 34.3 200 542-762 338-574 (577)
67 TIGR00467 lysS_arch lysyl-tRNA 99.9 7.5E-22 1.6E-26 223.9 18.6 99 90-196 18-124 (515)
68 PRK12451 arginyl-tRNA syntheta 99.9 6.8E-20 1.5E-24 212.9 32.6 193 542-759 328-556 (562)
69 PLN02286 arginine-tRNA ligase 99.9 4.7E-19 1E-23 206.0 35.1 202 542-762 331-573 (576)
70 cd00671 ArgRS_core catalytic c 99.8 4.1E-19 8.9E-24 182.1 18.5 119 92-232 2-121 (212)
71 PF08264 Anticodon_1: Anticodo 99.8 2.2E-18 4.9E-23 167.6 13.8 127 680-808 1-133 (153)
72 cd07962 Anticodon_Ia_Val Antic 99.6 6.9E-15 1.5E-19 140.0 16.4 135 624-772 1-135 (135)
73 PF00750 tRNA-synt_1d: tRNA sy 99.6 2.1E-15 4.5E-20 166.3 13.9 151 74-228 5-196 (354)
74 cd07959 Anticodon_Ia_Leu_AEc A 99.6 6.7E-14 1.4E-18 129.6 14.4 116 624-772 1-117 (117)
75 cd07957 Anticodon_Ia_Met Antic 99.5 1.1E-13 2.3E-18 130.4 13.9 95 676-772 34-129 (129)
76 cd07958 Anticodon_Ia_Leu_BEm A 99.5 6.4E-13 1.4E-17 122.8 13.1 117 624-772 1-117 (117)
77 PF01921 tRNA-synt_1f: tRNA sy 99.4 4.8E-13 1E-17 143.6 6.9 102 88-196 21-130 (360)
78 COG1384 LysS Lysyl-tRNA synthe 99.3 1.2E-11 2.7E-16 136.0 12.1 101 90-196 19-127 (521)
79 cd00802 class_I_aaRS_core cata 99.3 8.6E-12 1.9E-16 119.9 7.3 76 95-186 2-77 (143)
80 PRK04156 gltX glutamyl-tRNA sy 99.2 2.2E-09 4.8E-14 122.9 24.1 97 93-225 102-198 (567)
81 cd07375 Anticodon_Ia_like Anti 99.1 1.2E-09 2.7E-14 100.4 13.7 116 627-761 2-117 (117)
82 TIGR00464 gltX_bact glutamyl-t 99.0 2.7E-08 5.9E-13 113.4 22.0 95 94-225 3-97 (470)
83 PRK01406 gltX glutamyl-tRNA sy 98.9 1.4E-07 3E-12 107.7 21.3 96 93-225 5-107 (476)
84 TIGR00463 gltX_arch glutamyl-t 98.8 5.9E-07 1.3E-11 103.1 24.2 98 91-226 92-189 (560)
85 PRK12558 glutamyl-tRNA synthet 98.7 7.9E-07 1.7E-11 99.8 21.6 93 94-225 4-97 (445)
86 PRK05347 glutaminyl-tRNA synth 98.7 3.4E-06 7.3E-11 96.2 25.5 97 93-226 30-126 (554)
87 PLN03233 putative glutamate-tR 98.7 3.7E-06 8.1E-11 95.5 24.7 96 93-226 12-107 (523)
88 PRK12410 glutamylglutaminyl-tR 98.7 2E-06 4.3E-11 96.1 22.2 91 97-225 4-94 (433)
89 PRK14703 glutaminyl-tRNA synth 98.7 3.3E-06 7.2E-11 100.4 24.1 97 93-226 32-128 (771)
90 PLN02907 glutamate-tRNA ligase 98.6 5.4E-06 1.2E-10 98.8 25.1 95 92-224 213-307 (722)
91 PTZ00437 glutaminyl-tRNA synth 98.6 2.3E-06 4.9E-11 97.5 20.8 96 93-226 52-147 (574)
92 PRK14895 gltX glutamyl-tRNA sy 98.6 5E-06 1.1E-10 94.5 23.5 95 94-225 6-100 (513)
93 PTZ00402 glutamyl-tRNA synthet 98.6 8.5E-06 1.8E-10 93.7 24.5 93 93-223 53-146 (601)
94 TIGR00440 glnS glutaminyl-tRNA 98.6 6.3E-06 1.4E-10 93.9 22.4 96 94-226 2-97 (522)
95 cd00418 GlxRS_core catalytic c 98.6 4.6E-06 9.9E-11 85.6 18.8 89 94-220 3-92 (230)
96 PLN02627 glutamyl-tRNA synthet 98.4 2.2E-05 4.8E-10 89.5 22.0 96 93-224 46-148 (535)
97 KOG1195 Arginyl-tRNA synthetas 98.4 0.00055 1.2E-08 75.7 30.3 158 66-227 86-280 (567)
98 cd09287 GluRS_non_core catalyt 98.3 1.6E-06 3.4E-11 89.4 8.1 94 95-224 4-97 (240)
99 KOG4426 Arginyl-tRNA synthetas 98.2 0.00023 5E-09 76.7 21.1 58 89-146 187-248 (656)
100 TIGR03838 queuosine_YadB gluta 97.8 7.4E-05 1.6E-09 79.0 8.9 94 96-226 4-97 (272)
101 cd00807 GlnRS_core catalytic c 97.8 8.8E-05 1.9E-09 76.4 8.6 93 94-224 3-95 (238)
102 PF00749 tRNA-synt_1c: tRNA sy 97.7 6.6E-05 1.4E-09 81.6 7.8 95 94-225 3-97 (314)
103 COG0008 GlnS Glutamyl- and glu 97.6 9.5E-05 2.1E-09 83.8 6.4 96 93-226 10-106 (472)
104 PLN02859 glutamine-tRNA ligase 97.6 0.00028 6.2E-09 83.5 10.2 96 93-226 265-360 (788)
105 PRK05710 glutamyl-Q tRNA(Asp) 97.3 0.00064 1.4E-08 72.8 8.7 96 93-225 6-101 (299)
106 cd00808 GluRS_core catalytic c 97.3 0.00091 2E-08 69.4 8.9 89 94-220 3-100 (239)
107 cd07956 Anticodon_Ia_Arg Antic 96.9 0.019 4.1E-07 55.9 13.4 136 603-758 2-149 (156)
108 KOG1147 Glutamyl-tRNA syntheta 96.9 0.003 6.4E-08 70.3 8.1 99 93-229 201-299 (712)
109 KOG1148 Glutaminyl-tRNA synthe 96.2 0.0073 1.6E-07 67.9 5.7 97 92-226 248-344 (764)
110 PRK13354 tyrosyl-tRNA syntheta 95.1 0.021 4.5E-07 64.4 4.4 60 538-600 185-244 (410)
111 cd00802 class_I_aaRS_core cata 94.8 0.047 1E-06 52.3 5.5 50 540-591 94-143 (143)
112 PLN02563 aminoacyl-tRNA ligase 94.8 0.063 1.4E-06 66.8 7.8 78 371-451 211-302 (963)
113 PRK05912 tyrosyl-tRNA syntheta 94.7 0.031 6.7E-07 63.1 4.3 72 538-615 187-259 (408)
114 cd00395 Tyr_Trp_RS_core cataly 94.3 0.092 2E-06 56.1 6.7 56 538-597 152-209 (273)
115 PF00579 tRNA-synt_1b: tRNA sy 94.3 0.059 1.3E-06 58.3 5.3 62 539-600 149-213 (292)
116 COG0495 LeuS Leucyl-tRNA synth 94.1 0.065 1.4E-06 64.7 5.7 78 373-452 136-228 (814)
117 cd00808 GluRS_core catalytic c 94.1 0.17 3.6E-06 52.8 7.9 75 540-618 119-194 (239)
118 cd00805 TyrRS_core catalytic c 94.0 0.097 2.1E-06 55.8 6.1 53 540-596 152-205 (269)
119 PRK12284 tryptophanyl-tRNA syn 93.7 0.093 2E-06 58.8 5.5 60 538-598 147-214 (431)
120 PRK12556 tryptophanyl-tRNA syn 93.7 0.077 1.7E-06 58.2 4.7 59 538-597 148-213 (332)
121 KOG1149 Glutamyl-tRNA syntheta 93.7 0.34 7.3E-06 53.3 9.3 132 96-262 37-190 (524)
122 KOG0435 Leucyl-tRNA synthetase 92.9 0.073 1.6E-06 61.2 3.1 76 372-450 158-248 (876)
123 TIGR00396 leuS_bact leucyl-tRN 92.3 0.24 5.2E-06 61.3 6.9 79 372-452 130-223 (842)
124 PRK08560 tyrosyl-tRNA syntheta 92.3 0.13 2.9E-06 56.4 4.1 59 538-600 167-229 (329)
125 TIGR00233 trpS tryptophanyl-tR 91.9 0.12 2.6E-06 56.7 3.1 43 91-138 2-44 (328)
126 PRK12285 tryptophanyl-tRNA syn 91.3 0.16 3.4E-06 56.5 3.3 61 73-138 40-108 (368)
127 COG0180 TrpS Tryptophanyl-tRNA 91.3 0.17 3.8E-06 54.4 3.5 59 539-599 145-212 (314)
128 PRK00390 leuS leucyl-tRNA synt 91.3 0.5 1.1E-05 58.3 8.0 101 371-473 132-247 (805)
129 PRK12282 tryptophanyl-tRNA syn 91.3 0.18 4E-06 55.3 3.8 62 538-599 141-209 (333)
130 PTZ00126 tyrosyl-tRNA syntheta 90.5 0.28 6E-06 54.8 4.4 59 538-599 209-271 (383)
131 cd00806 TrpRS_core catalytic c 90.0 0.32 7E-06 52.1 4.2 59 539-599 137-205 (280)
132 TIGR00234 tyrS tyrosyl-tRNA sy 89.2 0.51 1.1E-05 52.8 5.1 57 540-600 178-235 (377)
133 COG0162 TyrS Tyrosyl-tRNA synt 88.7 0.4 8.8E-06 53.5 3.9 52 540-596 181-234 (401)
134 PRK12285 tryptophanyl-tRNA syn 88.7 1.3 2.8E-05 49.3 7.8 58 540-599 204-265 (368)
135 PRK00927 tryptophanyl-tRNA syn 88.3 0.38 8.2E-06 52.9 3.3 61 538-599 137-209 (333)
136 PRK12283 tryptophanyl-tRNA syn 87.7 0.52 1.1E-05 52.5 3.9 24 576-599 254-277 (398)
137 cd00806 TrpRS_core catalytic c 87.3 1 2.2E-05 48.3 5.8 37 99-138 6-42 (280)
138 PF05746 DALR_1: DALR anticodo 87.2 3.4 7.3E-05 37.8 8.6 78 677-758 32-112 (119)
139 cd00807 GlnRS_core catalytic c 87.0 2.1 4.6E-05 44.5 7.6 64 572-636 151-232 (238)
140 cd09287 GluRS_non_core catalyt 86.4 1.8 3.9E-05 45.1 6.8 65 572-637 153-235 (240)
141 cd00395 Tyr_Trp_RS_core cataly 86.3 0.82 1.8E-05 48.9 4.4 33 100-136 7-40 (273)
142 PLN02486 aminoacyl-tRNA ligase 85.7 3.5 7.5E-05 46.2 9.0 43 89-135 71-114 (383)
143 PRK13354 tyrosyl-tRNA syntheta 84.9 1.2 2.6E-05 50.4 5.1 45 89-138 31-76 (410)
144 cd00805 TyrRS_core catalytic c 84.4 0.74 1.6E-05 49.1 3.0 73 99-192 7-82 (269)
145 PRK08560 tyrosyl-tRNA syntheta 82.3 2.1 4.5E-05 47.1 5.4 44 90-138 29-72 (329)
146 PLN02486 aminoacyl-tRNA ligase 78.9 2.1 4.5E-05 47.9 4.0 65 541-614 221-289 (383)
147 PRK05912 tyrosyl-tRNA syntheta 78.6 3.7 8.1E-05 46.5 6.1 42 90-136 32-74 (408)
148 TIGR00233 trpS tryptophanyl-tR 76.5 5 0.00011 44.1 6.1 58 540-599 140-206 (328)
149 PRK12284 tryptophanyl-tRNA syn 74.7 5.9 0.00013 44.7 6.1 103 94-225 5-108 (431)
150 PF01927 Mut7-C: Mut7-C RNAse 73.8 3.1 6.8E-05 40.0 3.3 21 119-139 12-32 (147)
151 PTZ00348 tyrosyl-tRNA syntheta 73.5 3.4 7.4E-05 49.5 4.1 59 538-599 174-236 (682)
152 PRK00927 tryptophanyl-tRNA syn 67.8 4 8.6E-05 45.0 2.8 33 99-135 8-40 (333)
153 PLN02886 aminoacyl-tRNA ligase 67.3 7 0.00015 43.7 4.6 36 94-134 49-84 (389)
154 smart00836 DALR_1 DALR anticod 67.3 44 0.00094 30.6 9.4 78 678-759 36-116 (122)
155 TIGR00234 tyrS tyrosyl-tRNA sy 63.6 5.6 0.00012 44.6 3.0 41 91-136 30-71 (377)
156 PLN02886 aminoacyl-tRNA ligase 63.0 5.9 0.00013 44.3 3.0 41 177-218 102-143 (389)
157 PF00579 tRNA-synt_1b: tRNA sy 62.0 3.9 8.5E-05 44.1 1.4 45 89-138 3-47 (292)
158 PTZ00126 tyrosyl-tRNA syntheta 58.0 13 0.00027 41.8 4.6 43 90-136 65-107 (383)
159 PRK12556 tryptophanyl-tRNA syn 57.9 12 0.00026 41.2 4.3 38 95-135 7-44 (332)
160 PLN02859 glutamine-tRNA ligase 56.6 20 0.00044 43.5 6.1 59 579-637 492-569 (788)
161 COG0008 GlnS Glutamyl- and glu 55.6 16 0.00035 42.1 4.9 60 571-631 235-299 (472)
162 COG0162 TyrS Tyrosyl-tRNA synt 55.4 23 0.0005 39.8 6.0 41 91-136 32-73 (401)
163 COG0180 TrpS Tryptophanyl-tRNA 53.8 33 0.00073 37.2 6.7 46 90-141 4-50 (314)
164 KOG2623 Tyrosyl-tRNA synthetas 52.2 13 0.00029 40.8 3.3 60 538-599 226-286 (467)
165 PRK12283 tryptophanyl-tRNA syn 45.9 42 0.0009 37.7 6.1 31 99-134 9-40 (398)
166 PRK05710 glutamyl-Q tRNA(Asp) 37.9 59 0.0013 35.2 5.6 42 572-617 222-263 (299)
167 PTZ00348 tyrosyl-tRNA syntheta 30.6 43 0.00093 40.4 3.4 40 90-134 31-71 (682)
168 PF09236 AHSP: Alpha-haemoglob 29.9 3.6E+02 0.0079 23.2 8.6 68 689-761 9-78 (89)
169 cd06545 GH18_3CO4_chitinase Th 29.2 1.8E+02 0.0039 30.4 7.6 99 99-222 33-134 (253)
170 TIGR03838 queuosine_YadB gluta 28.5 58 0.0013 34.7 3.6 50 541-593 187-236 (272)
171 PF00749 tRNA-synt_1c: tRNA sy 27.9 1.2E+02 0.0026 33.2 6.0 73 540-616 200-275 (314)
172 PRK12282 tryptophanyl-tRNA syn 27.2 32 0.0007 37.8 1.5 17 99-115 9-25 (333)
173 KOG2144 Tyrosyl-tRNA synthetas 26.9 37 0.0008 36.0 1.7 52 538-593 176-229 (360)
174 KOG2145 Cytoplasmic tryptophan 26.5 53 0.0011 34.8 2.7 27 88-114 82-108 (397)
175 COG3171 Uncharacterized protei 23.0 1.8E+02 0.0039 26.4 5.0 51 181-231 22-73 (119)
No 1
>COG0525 ValS Valyl-tRNA synthetase [Translation, ribosomal structure and biogenesis]
Probab=100.00 E-value=1.1e-188 Score=1611.52 Aligned_cols=730 Identities=55% Similarity=1.004 Sum_probs=686.3
Q ss_pred CCCCCCh-hhHHHHHHHHHhcCCCCCCCCCCCCCEEEeCCCCCCCCCCcchhhHHHHHHHHHHHHHHHCCCcccccCCCC
Q 003578 59 LPKTFDF-TSEERIYNWWESQGYFKPNFERGSDPFVISMPPPNVTGSLHMGHAMFVTLEDIMVRYHRMKGRPTLWLPGTD 137 (809)
Q Consensus 59 ~~~~~~~-~~E~~~~~~W~~~~~f~~~~~~~~~~f~i~~~pPy~nG~lHiGH~~~~~~~Di~~Ry~rm~G~~V~~~~G~D 137 (809)
+|+.||| ++|++||++|++++.|++..+...++|+|.+||||+||.||||||+++++.|+++||+||+||+|+|++|||
T Consensus 1 ~~~~ydp~~iE~k~~~~W~~~~~f~~~~~~~~~~f~I~~PPPNVTG~LHmGHAl~~tl~D~l~RykRM~G~~vl~~pG~D 80 (877)
T COG0525 1 LPKTYDPKEIEEKWYKKWEESGYFKPDPNEDKPPFSIDTPPPNVTGSLHMGHALNYTLQDILARYKRMRGYNVLWPPGTD 80 (877)
T ss_pred CCCCCChhhhhHHHHHHHHhcCCccCCCCCCCCCcEEeCCCCCCCCcccchhhhhHHHHHHHHHHHHcCCCeeecCCCCC
Confidence 5789999 999999999999999999876542569999999999999999999999999999999999999999999999
Q ss_pred CCCCchHHHHHHHHHHcCCCccccCHHHHHHHHHHHHHHHHHHHHHHHHHhcccccCCCccccCChhhHHHHHHHHHHHH
Q 003578 138 HAGIATQLVVEKMLAAEGIKRVELSRDEFTKRVWEWKEKYGGTITSQIKRLGASCDWTRERFTLDEQLSRAVVEAFIRLH 217 (809)
Q Consensus 138 ~~Gl~~~~~~e~~~~~~g~~~~~~~~~~f~~~~~~~~~~~~~~~~~~l~~lgi~~Dw~~~~~T~d~~~~~~v~~~f~~L~ 217 (809)
|+|+|||.+||+.+.++|+++.+++||+|+++||+|++++.+.|++||++||+|+||+|+|||+||.+.++|+++|.+||
T Consensus 81 hAGIaTq~~VEk~l~~~g~~r~d~gRe~Fl~~~weWk~e~~~~I~~Q~~rLG~S~DWsrE~fTmD~~~s~av~~~Fv~Ly 160 (877)
T COG0525 81 HAGIATQVVVEKQLAAEGITRHDLGREEFLKKCWEWKEESGGTIREQLRRLGVSVDWSRERFTMDPGLSRAVQEAFVRLY 160 (877)
T ss_pred CCCchHHHHHHHHHHHcCCCccccCHHHHHHHHHHHHHHHHHHHHHHHHHhCCCcccccccccCCHHHHHHHHHHHHHHH
Confidence 99999999999999888999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HcCceeecCcccccCCCCCcccCccccccccCCCceEEEEEEecCCCeeEEEEecCCccccCCcEEEECCCCchhhhccc
Q 003578 218 EKGLIYQGSYMVNWSPNLQTAVSDLEVEYSEEPGTLYYIKYRVAGRSDFLTIATTRPETLFGDVALAVNPQDEHYSQFIG 297 (809)
Q Consensus 218 ~~Gliy~~~~~v~w~p~~~t~lsd~Ev~~~~~~~~~~~~~f~~~~~~~~l~v~Tt~petl~~~~av~v~p~~~~y~~l~g 297 (809)
++|||||++++|||||+|+|+|||.||+|++.+|.++||+|++.+++.+|+|||||||||+||+||||||+|+||++|+|
T Consensus 161 ~~GlIYr~~~lVNWcP~~~TAiSd~EVe~~e~~g~L~~i~y~l~~~~~~i~VATTRPEtmlgdtAVaVhP~DeRYk~LvG 240 (877)
T COG0525 161 EKGLIYRGERLVNWCPKCRTAISDIEVEYKEVEGKLYYIKYPLADGDGYLVVATTRPETLLGDTAVAVHPDDERYKHLVG 240 (877)
T ss_pred HCCceeecCCcccCCCccccchhhhhhccceeeeeEEEEEEecCCCCceEEEEecCccccccceEEEECCCChhhHhhcC
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CeeecCCCCCCeeeEEecCCccccCCCCceeecCCCChhhHHHHHHhCCCceeecCCCCccccccc-ccCCCCHHHHHHH
Q 003578 298 MMAIVPMTYGRHVPIISDKYVDKEFGTGVLKISPGHDHNDYLLARKLGLPILNVMNKDGTLNEVAG-LFRGLDRFEARKK 376 (809)
Q Consensus 298 ~~~~~P~~~~~~vpi~~~~~V~~~~GTG~v~~~P~h~~~D~~~~~~~~l~~~~~~~~~G~~~~~~g-~~~G~~~~~a~~~ 376 (809)
+.+++|+ .|++|||++|+||+++||||+||+||+||++||+++++|+||+++++|++|+++++++ +|+||++++||++
T Consensus 241 k~v~lPl-~~r~IpIiaD~~VD~eFGTG~VkItpahD~nD~e~~krh~Lp~i~i~d~dG~in~~~~~~~~Gl~r~eAR~k 319 (877)
T COG0525 241 KEVILPL-VGREIPIIADEYVDPEFGTGAVKITPAHDFNDYEVGKRHNLPLINIIDEDGRINEEAAGEFAGLDRFEARKK 319 (877)
T ss_pred CEEecCC-CCCeeeeecCcccCCcCCCceEEecCCCCchhhhhhhcCCCCceEEECCCCeeccCCccccCCCcHHHHHHH
Confidence 9999999 6899999999999999999999999999999999999999999999999999998885 9999999999999
Q ss_pred HHHHHHHCCCeeeeecccccCcccccCCCeeEEeeccceeeeccHHHHHHHHHHhcCCceEecchhHHHHHHHHhcCCce
Q 003578 377 LWSDLEETGLAVKKEPHTLRVPRSQRGGEVIEPLVSKQWFVTMEPLAEKALHAVEKGELTIMPERFEKIYNHWLSNIKDW 456 (809)
Q Consensus 377 i~~~L~~~g~~~~~~~~~~~~p~c~r~~~~i~~~~~~qwfl~~~~~~~~~~~~~~~~~~~~~P~~~~~~~~~~l~~l~Dw 456 (809)
|+++|++.|++++.+++.|++|+|+|||+||||++++|||+++..+++.+++++++|+++|+|+++++++.+|+++++||
T Consensus 320 Iv~~L~~~GlLvk~e~~~h~V~~~~R~g~~IEp~ls~QWfVk~~~la~~~l~~~~~g~i~f~P~~~~~~~~~W~~~i~DW 399 (877)
T COG0525 320 IVEDLEEQGLLVKIEPHKHSVGHCERCGTPIEPLLSKQWFVKVLELAKKALEAVKDGKIKFVPERMEKRYEDWMENIRDW 399 (877)
T ss_pred HHHHHHhCCCeEeeeeccccCccccCCCceeeeeecceeeEEhHhhHHHHHHHHhcCCceEecHHHHHHHHHHHhhCcCc
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred eeeccccccceeeEEEEcCCcccEEEcCChhHHHHHHhhhcCCCccccccCCccceeecccCccceecCCCCCChhhhhh
Q 003578 457 CISRQLWWGHRIPVWYIVGKEEEYIVARNADEALEKAHQKYGKNVEIYQDPDVLDTWFSSALWPFSTLGWPDVSADDFKK 536 (809)
Q Consensus 457 ~ISRq~~WG~piP~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dvld~Wfds~~~~~~~~~~~~~~~~~~~~ 536 (809)
|||||+|||||||+|||.+ ++...++.+..+...+ ...|. ...+.+++|||||||+|++|||+++|||.++ .+|++
T Consensus 400 cISRQlwwGh~IPvWy~~~-~g~v~v~~~~~~~~~~-~~~~~-~~~~~qd~DVLDTWFSS~LwPfstlgWp~~t-~~l~~ 475 (877)
T COG0525 400 CISRQLWWGHRIPVWYCKE-CGNVVVAEEEPEDPAA-AEKCP-KEELEQDEDVLDTWFSSSLWPFSTLGWPEET-PDLKK 475 (877)
T ss_pred eeeeeeecCcccceEEecC-CCcEEeCCccccchhh-hccCc-hhcccCCcchhhhhhhcccccccccCCCCcc-hHHHh
Confidence 9999999999999999964 4566666663333322 11121 2568899999999999999999999999986 89999
Q ss_pred cCCCcEEEeeehhHHhHHHHHHHHHHHhcCCCCceeEEEeeeEEccCCCcccccccCccChhhHHHhhCCchHHHHHhhC
Q 003578 537 FYPTTMLETGHDILFFWVARMVMMGIEFTGSVPFSHVYLHGLIRDSQGRKMSKTLGNVIDPIDTIKEFGADALRFTISLG 616 (809)
Q Consensus 537 ~~p~d~~~~G~Di~~~w~~~~~~~~~~l~~~~Pf~~v~~hg~vld~~G~KMSKS~GN~I~p~dli~~ygaD~lR~~ll~~ 616 (809)
+||+|++++|+||||||+++|+++++.++|+.||+.|++||+|+|.+|+|||||+||||+|.++|++||+|+|||+|++.
T Consensus 476 fyPt~llvtG~DIIffWvarmi~~~~~~~~~~PFk~V~ihGLVrDe~G~KMSKS~GNvIDP~d~I~~yGaDAlRf~la~~ 555 (877)
T COG0525 476 FYPTDLLVTGHDIIFFWVARMIMRGLHLTGEVPFKDVYIHGLVRDEQGRKMSKSKGNVIDPLDVIDKYGADALRFTLASL 555 (877)
T ss_pred cCCCccccccchhhHHHHHHHHHHHHHhcCCCCccEEEEeeeEEcCCCCCCcccCCCcCCHHHHHHHhChHHHHHHHHhc
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999998
Q ss_pred CC-CCcccccHHHHHHHHHHHHHHHHHHHHHHHhCCCCCchhhHHHHhhhccchhhhhcCCCchhHHHHHHHHHHHHHHH
Q 003578 617 TA-GQDLSLSIERLTANKAFTNKLWNAGKFILQNLPSQNDISRWEILLAYKFDEEECLCKAPLPECWVVSKLHMLIDTVT 695 (809)
Q Consensus 617 ~~-~~d~~fs~~~l~~~~~~~~kl~N~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~~d~~il~~l~~~~~~v~ 695 (809)
+. ++|++|+++.++++++|+|||||+.||++.++.+.... + .+....+..|+||+++++++++.++
T Consensus 556 ~~~G~Di~~~~~~~~~~rnF~nKlWNa~Rfv~~~~~~~~~~-~------------~~~~~~~~~drWIls~l~~~v~~v~ 622 (877)
T COG0525 556 ASPGRDINFDEKRVEGYRNFLNKLWNATRFVLMNLDDLGPD-D------------LDLLALSLADRWILSRLNETVKEVT 622 (877)
T ss_pred cCCCcccCcCHHHHHHHHHHHHHHHhHHHHHHhcccccCcc-c------------ccccccchHHHHHHHHHHHHHHHHH
Confidence 55 99999999999999999999999999999887543320 0 0002235789999999999999999
Q ss_pred HHhhcCChHHHHHHHHHHHHHhhHHHHHHHhhhhhhcCCCcHHHHHHHHHHHHHHHHHHHHhccchhHHHHHHHHHhccC
Q 003578 696 ASYDKYFFGDVGRETYDFFWSDFADWYIEASKARLYRSEYDSDAIIAQAVLLYIFENILKLLHPFMPFVTEELWQSLRKR 775 (809)
Q Consensus 696 ~a~e~~~f~~a~~~i~~f~~~~~~n~Yi~~~k~~l~~~~~~~~~~~~~~~l~~vl~~l~~lL~P~~P~~aeeiw~~L~~~ 775 (809)
++|++|+|..|.+++++|+|++||+||||++|++++.+ ++.+.+++.+|+++++.+++||||||||+||+||+.|+..
T Consensus 623 ~~ld~y~f~~a~~~ly~F~W~~fcD~YlEl~K~~l~~~--~~~~~~a~~tL~~vl~~~lrLLhPfmPfiTEei~q~l~~~ 700 (877)
T COG0525 623 EALDNYRFDEAARALYEFIWNDFCDWYLELAKPRLYGG--EEEKRAARATLYYVLDTLLRLLHPFMPFITEEIWQKLPGT 700 (877)
T ss_pred HHHHhhhHHHHHHHHHHHhHHHHHHHHHHHhhhhhcCc--HHHHHHHHHHHHHHHHHHHHHhCCCCccchHHHHHhcCCC
Confidence 99999999999999999999999999999999999986 4466689999999999999999999999999999999876
Q ss_pred CCceEecCCCCCCC-cCCHHHHHHHHHHHHHHhhC
Q 003578 776 KEALIVSPWPQTSL-PRHMSAIKRFENLQSLVILI 809 (809)
Q Consensus 776 ~~sv~~~~wP~~~~-~~d~~~~~~~~~~~~~~~~~ 809 (809)
.||+.++||..+. ..|+++++.++.++++++++
T Consensus 701 -~si~~~~~P~~~~~~~d~~a~~~~~~l~~ii~~i 734 (877)
T COG0525 701 -ESIHLASWPEVDEELIDEEAEKEFELLKEIISAI 734 (877)
T ss_pred -CeEEeccCCCcchhhccHHHHHHHHHHHHHHHHH
Confidence 7999999999985 79999999999999998764
No 2
>PLN02943 aminoacyl-tRNA ligase
Probab=100.00 E-value=5.2e-171 Score=1545.30 Aligned_cols=755 Identities=88% Similarity=1.424 Sum_probs=691.9
Q ss_pred cccCCCCCCCCCCChhhHHHHHHHHHhcCCCCCCCCCCCCCEEEeCCCCCCCCCCcchhhHHHHHHHHHHHHHHHCCCcc
Q 003578 51 AAENNKDTLPKTFDFTSEERIYNWWESQGYFKPNFERGSDPFVISMPPPNVTGSLHMGHAMFVTLEDIMVRYHRMKGRPT 130 (809)
Q Consensus 51 ~~~~~~~~~~~~~~~~~E~~~~~~W~~~~~f~~~~~~~~~~f~i~~~pPy~nG~lHiGH~~~~~~~Di~~Ry~rm~G~~V 130 (809)
++.-..+++|+.||+..|++||++|+++++|++..+.++++|+|++|||||||.|||||+++++++|+++||+||+||+|
T Consensus 49 ~~~~~~~~~~~~y~~~~E~~~~~~W~~~~~f~~~~~~~~~~f~i~~pPP~~tG~lHiGHa~~~~~~D~~~Ry~rm~G~~v 128 (958)
T PLN02943 49 NDVFTSPETAKSFDFTSEERIYNWWESQGYFKPNFDRGGDPFVIPMPPPNVTGSLHMGHAMFVTLEDIMVRYNRMKGRPT 128 (958)
T ss_pred cchhcccccCCCCChhhhHHHHHHHHHCCCcccCcccCCCCEEEecCCCCCCCchhHHHHHHHHHHHHHHHHHHhcCCee
Confidence 45555578999999933999999999999999987656778999999999999999999999999999999999999999
Q ss_pred cccCCCCCCCCchHHHHHHHHHHcCCCccccCHHHHHHHHHHHHHHHHHHHHHHHHHhcccccCCCccccCChhhHHHHH
Q 003578 131 LWLPGTDHAGIATQLVVEKMLAAEGIKRVELSRDEFTKRVWEWKEKYGGTITSQIKRLGASCDWTRERFTLDEQLSRAVV 210 (809)
Q Consensus 131 ~~~~G~D~~Gl~~~~~~e~~~~~~g~~~~~~~~~~f~~~~~~~~~~~~~~~~~~l~~lgi~~Dw~~~~~T~d~~~~~~v~ 210 (809)
+|++||||||+|+|.+||+.++++|+++.+++|++|+++||+|++++++.|++||++||+++||+|+|+|+||.|+++|+
T Consensus 129 l~~~G~D~~Gl~~e~~vek~l~~~~~~~~~~~re~f~~~~~~~~~~~~~~~~~~~~~lG~s~Dw~~~~~T~d~~~~~~v~ 208 (958)
T PLN02943 129 LWIPGTDHAGIATQLVVEKMLASEGIKRTDLGRDEFTKRVWEWKEKYGGTITNQIKRLGASCDWSRERFTLDEQLSRAVV 208 (958)
T ss_pred ecCCCCCcccchhHHHHHHHHHHcCCChhhCCHHHHHHHHHHHHHHHHHHHHHHHHHhCcceecCCCcccCCHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHcCceeecCcccccCCCCCcccCccccccccCCCceEEEEEEecCCC-eeEEEEecCCccccCCcEEEECCCC
Q 003578 211 EAFIRLHEKGLIYQGSYMVNWSPNLQTAVSDLEVEYSEEPGTLYYIKYRVAGRS-DFLTIATTRPETLFGDVALAVNPQD 289 (809)
Q Consensus 211 ~~f~~L~~~Gliy~~~~~v~w~p~~~t~lsd~Ev~~~~~~~~~~~~~f~~~~~~-~~l~v~Tt~petl~~~~av~v~p~~ 289 (809)
++|.+|+++||||++.++|+|||.|+|+|||+||+|.+..+.++||+|++.+++ .+++|||||||||+||+||||||+|
T Consensus 209 ~~F~~l~~~Gliyr~~~~V~wcp~~~Tals~~Evey~e~~~~~~~i~f~l~~~~~~~l~vaTTrPeTl~~~~avavnP~d 288 (958)
T PLN02943 209 EAFVRLHEKGLIYQGSYMVNWSPNLQTAVSDLEVEYSEEPGTLYYIKYRVAGGSEDFLTIATTRPETLFGDVAIAVNPED 288 (958)
T ss_pred HHHHHHHHCCCEEecCceeccCCCCCCCcCHHHhhcccccccEEEEEEEEcCCCCCEEEEEeCChhhhhcceEEEECCCC
Confidence 999999999999999999999999999999999999999999999999998754 7999999999999999999999999
Q ss_pred chhhhcccCeeecCCCCCCeeeEEecCCccccCCCCceeecCCCChhhHHHHHHhCCCceeecCCCCcccccccccCCCC
Q 003578 290 EHYSQFIGMMAIVPMTYGRHVPIISDKYVDKEFGTGVLKISPGHDHNDYLLARKLGLPILNVMNKDGTLNEVAGLFRGLD 369 (809)
Q Consensus 290 ~~y~~l~g~~~~~P~~~~~~vpi~~~~~V~~~~GTG~v~~~P~h~~~D~~~~~~~~l~~~~~~~~~G~~~~~~g~~~G~~ 369 (809)
+||.+|+|++++||++.|+++||++++||++++|||+||+|||||++||+++++||||+++++|++|++++++|.|
T Consensus 289 ~ry~~l~g~~~~~Pl~~~~~ipii~~~~V~~~~GTG~V~~~Pahd~~D~~~~~~~~L~~~~~id~~G~~~~~~g~~---- 364 (958)
T PLN02943 289 DRYSKYIGKMAIVPMTYGRHVPIIADRYVDKDFGTGVLKISPGHDHNDYLLARKLGLPILNVMNKDGTLNEVAGLY---- 364 (958)
T ss_pred HHHHHHcCCEEECCCcCCCeeeEEecCcccCCCCCceEEeCCCCChHHHHHHHHcCCCceeeeCCCceeeccCCcc----
Confidence 9999999999999995489999999999999999999999999999999999999999999999999999876554
Q ss_pred HHHHHHHHHHHHHHCCCeeeeecccccCcccccCCCeeEEeeccceeeeccHHHHHHHHHHhcCCceEecchhHHHHHHH
Q 003578 370 RFEARKKLWSDLEETGLAVKKEPHTLRVPRSQRGGEVIEPLVSKQWFVTMEPLAEKALHAVEKGELTIMPERFEKIYNHW 449 (809)
Q Consensus 370 ~~~a~~~i~~~L~~~g~~~~~~~~~~~~p~c~r~~~~i~~~~~~qwfl~~~~~~~~~~~~~~~~~~~~~P~~~~~~~~~~ 449 (809)
+++||++|+++|+++|++++.+++.|++|+|||||++|++++++||||+++++++++++++++++++|+|+..++++.+|
T Consensus 365 ~~ear~~iv~~L~~~g~l~~~e~~~~~~p~c~R~~~~Ie~~~~~QWFi~~~~l~~~~l~~v~~~~i~~~P~~~~~~~~~w 444 (958)
T PLN02943 365 WFEAREKLWSDLEETGLAVKKEPHTLRVPRSQRGGEVIEPLVSKQWFVTMEPLAEKALKAVENGELTIIPERFEKIYNHW 444 (958)
T ss_pred HHHHHHHHHHHHHHCCCeeeeeeeecCCCeeCCCCcEeEEEeccceeEEHHHHHHHHHHHHhcCCcEEEChHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999889999999999999999
Q ss_pred HhcCCceeeeccccccceeeEEEEcCC--cccEEEcCChhHHHHHHhhhcCCCccccccCCccceeecccCccceecCCC
Q 003578 450 LSNIKDWCISRQLWWGHRIPVWYIVGK--EEEYIVARNADEALEKAHQKYGKNVEIYQDPDVLDTWFSSALWPFSTLGWP 527 (809)
Q Consensus 450 l~~l~Dw~ISRq~~WG~piP~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dvld~Wfds~~~~~~~~~~~ 527 (809)
|++++||||||||+||||||+|||++. ++.++++.+..++...+..+||....+.+++|||||||||++||++++|||
T Consensus 445 l~~l~DWcISRQr~WG~pIP~w~~~~~~~~~~~~v~~~~~~~~~~~~~~~g~~~~~~~~~DVlDtWFdS~l~p~s~lgwp 524 (958)
T PLN02943 445 LSNIKDWCISRQLWWGHRIPVWYIVGKDCEEDYIVARSAEEALEKAREKYGKDVEIYQDPDVLDTWFSSALWPFSTLGWP 524 (958)
T ss_pred HhcCccceEEEecCCCCccCceeccccCCCceEEecCcHHHHHHHhhhhcCCchheeecCceEEEEEcCccchHHhcCCC
Confidence 999999999999999999999998432 234888888888888777777766678899999999999999999999999
Q ss_pred CCChhhhhhcCCCcEEEeeehhHHhHHHHHHHHHHHhcCCCCceeEEEeeeEEccCCCcccccccCccChhhHHHhhCCc
Q 003578 528 DVSADDFKKFYPTTMLETGHDILFFWVARMVMMGIEFTGSVPFSHVYLHGLIRDSQGRKMSKTLGNVIDPIDTIKEFGAD 607 (809)
Q Consensus 528 ~~~~~~~~~~~p~d~~~~G~Di~~~w~~~~~~~~~~l~~~~Pf~~v~~hg~vld~~G~KMSKS~GN~I~p~dli~~ygaD 607 (809)
..++++|++|||+|++++|+||++||+++|++++..++|++||+++++||+++|.+|+|||||+||+|+|.+++++||+|
T Consensus 525 ~~~~~~~~~~yP~dl~~~G~Dii~fW~a~m~~~~~~~~~~~Pf~~v~~hg~v~~~~G~KMSKS~GN~i~p~~~i~~ygaD 604 (958)
T PLN02943 525 DVSAEDFKKFYPTTVLETGHDILFFWVARMVMMGIEFTGTVPFSYVYLHGLIRDSQGRKMSKTLGNVIDPLDTIKEFGTD 604 (958)
T ss_pred ccChHHHhccCCCeEEEEeehHHHHHHHHHHHhhhhhcCCCChheEEEeccEECCCCCcccCcCCCCCCHHHHHHhcCCh
Confidence 86557899999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hHHHHHhhCCCCCcccccHHHHHHHHHHHHHHHHHHHHHHHhCCCCCchhhHHHHhhhccchhhhhcCCCchhHHHHHHH
Q 003578 608 ALRFTISLGTAGQDLSLSIERLTANKAFTNKLWNAGKFILQNLPSQNDISRWEILLAYKFDEEECLCKAPLPECWVVSKL 687 (809)
Q Consensus 608 ~lR~~ll~~~~~~d~~fs~~~l~~~~~~~~kl~N~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~~d~~il~~l 687 (809)
++||||++.++++|++|+++.+..+++++++|||+.+|+..++.+.........+....+........++..|+|+++++
T Consensus 605 alR~~l~~~~~~~d~~fs~~~l~~~~~~~~kl~N~~rf~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~~D~wilskl 684 (958)
T PLN02943 605 ALRFTLALGTAGQDLNLSTERLTSNKAFTNKLWNAGKFVLQNLPSQSDTSAWEHILACKFDKEESLLSLPLPECWVVSKL 684 (958)
T ss_pred HHHHHHHhCCCCCCccccHHHHHHHHHHHHHHHHHHHHHHhccccccccccccccccccCCccccccccCHHHHHHHHHH
Confidence 99999998877999999999999999999999999999988764321100000000000000001123567899999999
Q ss_pred HHHHHHHHHHhhcCChHHHHHHHHHHHHHhhHHHHHHHhhhhhhcCCCcHHHHHHHHHHHHHHHHHHHHhccchhHHHHH
Q 003578 688 HMLIDTVTASYDKYFFGDVGRETYDFFWSDFADWYIEASKARLYRSEYDSDAIIAQAVLLYIFENILKLLHPFMPFVTEE 767 (809)
Q Consensus 688 ~~~~~~v~~a~e~~~f~~a~~~i~~f~~~~~~n~Yi~~~k~~l~~~~~~~~~~~~~~~l~~vl~~l~~lL~P~~P~~aee 767 (809)
+.+++++.++|++|+|+.|++.+++|+++++||+||+.+|+|++.+++...+.+++.+++.+++.+++||+|||||+||+
T Consensus 685 ~~~i~~v~~~~e~y~f~~A~~~i~~f~~~~~~d~YiE~~Kprl~~~~~~~~~~~a~~vL~~vl~~ll~LL~PfmPfitEE 764 (958)
T PLN02943 685 HELIDSVTTSYDKYFFGDVGREIYDFFWSDFADWYIEASKTRLYHSGDNSALSRAQAVLLYVFENILKLLHPFMPFVTEE 764 (958)
T ss_pred HHHHHHHHHHHHhcChhHHHHHHHHHHHHHHHHHHHHhccHhhccCCchHHHHHHHHHHHHHHHHHHHHHhCcchhHHHH
Confidence 99999999999999999999999999989999999999999998764444567789999999999999999999999999
Q ss_pred HHHHhccCCCceEecCCCCCCCcCCHHHHHHHHHHHHHHhhC
Q 003578 768 LWQSLRKRKEALIVSPWPQTSLPRHMSAIKRFENLQSLVILI 809 (809)
Q Consensus 768 iw~~L~~~~~sv~~~~wP~~~~~~d~~~~~~~~~~~~~~~~~ 809 (809)
||++|+++++||+.++||+.+...|+++++.|+.++++++.+
T Consensus 765 Lwq~L~~~~~si~~~~wP~~~~~~d~~~~~~~~~v~~ii~~i 806 (958)
T PLN02943 765 LWQALPYRKEALIVSPWPQTSLPKDLKSIKRFENLQSLTRAI 806 (958)
T ss_pred HHHHcCCCCCceeecCCCCCcccCCHHHHHHHHHHHHHHHHH
Confidence 999998666799999999987667888999999999988753
No 3
>KOG0432 consensus Valyl-tRNA synthetase [Translation, ribosomal structure and biogenesis]
Probab=100.00 E-value=2.1e-171 Score=1425.44 Aligned_cols=740 Identities=52% Similarity=0.934 Sum_probs=694.5
Q ss_pred CCCCCCCCCCh-hhHHHHHHHHHhcCCCCCCCC-CCCCCEEEeCCCCCCCCCCcchhhHHHHHHHHHHHHHHHCCCcccc
Q 003578 55 NKDTLPKTFDF-TSEERIYNWWESQGYFKPNFE-RGSDPFVISMPPPNVTGSLHMGHAMFVTLEDIMVRYHRMKGRPTLW 132 (809)
Q Consensus 55 ~~~~~~~~~~~-~~E~~~~~~W~~~~~f~~~~~-~~~~~f~i~~~pPy~nG~lHiGH~~~~~~~Di~~Ry~rm~G~~V~~ 132 (809)
-+..+|+.|++ .+|+.|+.||++.+.|++... .....|+++.||||++|.||||||++.++.|+++||+||.|+.|+|
T Consensus 38 ~~~~~~~~y~p~~vE~~wy~ww~k~g~fkp~~~~~~~~~f~i~~PPPNVTG~LHiGHALt~aiqD~i~R~~rm~G~~vlw 117 (995)
T KOG0432|consen 38 LSGPLPAAYSPAYVESAWYKWWEKQGFFKPEYGPNPGGVFVIPLPPPNVTGSLHIGHALTVAIQDALARYNRMHGYQVLW 117 (995)
T ss_pred cCCcccccCCccchHHHHHHHHHHcCCCCcccCCCCCCcceeecCCCCcccccchhHHHHHHHHHHHHHHHHhcCCeeee
Confidence 46778889999 899999999999999999866 3467999999999999999999999999999999999999999999
Q ss_pred cCCCCCCCCchHHHHHHHHHHcC-CCccccCHHHHHHHHHHHHHHHHHHHHHHHHHhcccccCCCccccCChhhHHHHHH
Q 003578 133 LPGTDHAGIATQLVVEKMLAAEG-IKRVELSRDEFTKRVWEWKEKYGGTITSQIKRLGASCDWTRERFTLDEQLSRAVVE 211 (809)
Q Consensus 133 ~~G~D~~Gl~~~~~~e~~~~~~g-~~~~~~~~~~f~~~~~~~~~~~~~~~~~~l~~lgi~~Dw~~~~~T~d~~~~~~v~~ 211 (809)
++|+||+|++||.+|||.+.++| +++.+++|++|++++|+|++++...|.+||++||.|+||+|++||||+...++|.+
T Consensus 118 ~PG~DHAGIATQ~VVEK~l~~~~~~~Rh~lgRe~F~~~vw~Wk~e~g~~I~~Qlk~lGas~DW~re~fTmD~~~s~AV~e 197 (995)
T KOG0432|consen 118 VPGTDHAGIATQVVVEKQLAREGGKTRHDLGREEFLKEVWEWKEEYGGRIYNQLKRLGASLDWDREAFTMDPKLSRAVTE 197 (995)
T ss_pred cCCccccchhHHHHHHHHHHHhcCcchhhcCHHHHHHHHHHHHHHhCccHHHHHHHhcCcccccHhhcccCHHHHHHHHH
Confidence 99999999999999999988776 89999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHcCceeecCcccccCCCCCcccCccccccccC----------------CCceEEEEEEecCCCeeEEEEecCCc
Q 003578 212 AFIRLHEKGLIYQGSYMVNWSPNLQTAVSDLEVEYSEE----------------PGTLYYIKYRVAGRSDFLTIATTRPE 275 (809)
Q Consensus 212 ~f~~L~~~Gliy~~~~~v~w~p~~~t~lsd~Ev~~~~~----------------~~~~~~~~f~~~~~~~~l~v~Tt~pe 275 (809)
.|.+|+++|+|||+.+.|||||.++|+|||.||++.+. .|.++.|+|++.+++..|+|+|||||
T Consensus 198 AFvrL~eeglIyR~~rlVNW~~~L~saiSdiEVe~~ei~~~t~l~vpGyd~~VeFG~L~~faY~v~gs~~~i~VaTTRpE 277 (995)
T KOG0432|consen 198 AFVRLHEEGLIYRANRLVNWCPALRSAISDIEVESVEIPGRTLLSVPGYDTKVEFGVLYSFAYPVEGSDEEIVVATTRPE 277 (995)
T ss_pred HHHHHHhcCceEecCceeeechhHHhhhhhheecceecCCCceEecCCCCcceeeeeeeEEEEeccCCCCeEEEecCCcc
Confidence 99999999999999999999999999999999998874 37889999999999999999999999
Q ss_pred cccCCcEEEECCCCchhhhcccCeeecCCCCCCeeeEEecCCccccCCCCceeecCCCChhhHHHHHHhCCCceeecCCC
Q 003578 276 TLFGDVALAVNPQDEHYSQFIGMMAIVPMTYGRHVPIISDKYVDKEFGTGVLKISPGHDHNDYLLARKLGLPILNVMNKD 355 (809)
Q Consensus 276 tl~~~~av~v~p~~~~y~~l~g~~~~~P~~~~~~vpi~~~~~V~~~~GTG~v~~~P~h~~~D~~~~~~~~l~~~~~~~~~ 355 (809)
||+||+||||||+|+||+++.|+.+.|||+ ++.+|||.|.+|+++||||+|+++|+||++||++|+|||||.+++++++
T Consensus 278 T~lGDvAvAVhP~D~RYk~lhGk~~~hP~~-~r~lPiI~D~~Vd~~fGTGaVKITPaHd~nDyEvgkRh~L~~~ni~~~d 356 (995)
T KOG0432|consen 278 TILGDVAVAVHPDDDRYKHLHGKFVKHPFT-GRKLPIICDIAVDMEFGTGAVKITPAHDPNDYEVGKRHNLEFINIFTDD 356 (995)
T ss_pred ccccceeEEeCCCCcccccccCceeecCCC-CCccceeecccccccccccceEecCCCChhHHHHHHhcCCCceeEEcCC
Confidence 999999999999999999999999999996 9999999999999999999999999999999999999999999999999
Q ss_pred CcccccccccCCCCHHHHHHHHHHHHHHCCCeeeeecccccCcccccCCCeeEEeeccceeeeccHHHHHHHHHHhcCCc
Q 003578 356 GTLNEVAGLFRGLDRFEARKKLWSDLEETGLAVKKEPHTLRVPRSQRGGEVIEPLVSKQWFVTMEPLAEKALHAVEKGEL 435 (809)
Q Consensus 356 G~~~~~~g~~~G~~~~~a~~~i~~~L~~~g~~~~~~~~~~~~p~c~r~~~~i~~~~~~qwfl~~~~~~~~~~~~~~~~~~ 435 (809)
|.+++.||+|+||+||+||++|++.|++.|+++..+++.+.+|.|.|||++|||++.+|||++++++.+++++++++|++
T Consensus 357 G~l~~~~gef~Gm~RFeAR~kvv~~L~e~gL~~g~~~h~mvlpiCSRsgDVIEpllkpQW~v~c~ema~~A~~av~sG~L 436 (995)
T KOG0432|consen 357 GLLNNVCGEFKGMKRFEAREKVVEKLKELGLYVGKENHPMVLPICSRSGDVIEPLLKPQWFVSCKEMAKKALKAVESGKL 436 (995)
T ss_pred CceeccchhccCcHHHHHHHHHHHHHHHhhhhhccCCCceeccccCCCCCcccccccchheeehHHHHHHHHHHHhcCCe
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred eEecchhHHHHHHHHhcCCceeeeccccccceeeEEEEcC-----CcccEEEcCChhHHHHHHhhhcC--CCccccccCC
Q 003578 436 TIMPERFEKIYNHWLSNIKDWCISRQLWWGHRIPVWYIVG-----KEEEYIVARNADEALEKAHQKYG--KNVEIYQDPD 508 (809)
Q Consensus 436 ~~~P~~~~~~~~~~l~~l~Dw~ISRq~~WG~piP~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~d 508 (809)
.+.|+..++.+.+|+++++|||||||.||||+||+|++.- ..+.|++++++++|++++.+++| +..+++|++|
T Consensus 437 ~i~P~~~~k~w~~W~~~i~DWCiSRQLWWGHrIPAy~v~~~~~~~ee~~WvvarseeeA~ekaa~k~g~~~~~~L~qDpD 516 (995)
T KOG0432|consen 437 EILPEFHEKEWYRWLENIRDWCISRQLWWGHRIPAYFVNLSDGRAEEDYWVVARSEEEAREKAAEKFGPGKEFTLEQDPD 516 (995)
T ss_pred EECchHHHHHHHHHHhhccccchhhhhhhccccceeeeecccCCCccceeEEeCCHHHHHHHHHHHhCCcccceeecCcc
Confidence 9999999999999999999999999999999999999831 24678999999999999999885 5678899999
Q ss_pred ccceeecccCccceecCCCCCChhhhhhcCCCcEEEeeehhHHhHHHHHHHHHHHhcCCCCceeEEEeeeEEccCCCccc
Q 003578 509 VLDTWFSSALWPFSTLGWPDVSADDFKKFYPTTMLETGHDILFFWVARMVMMGIEFTGSVPFSHVYLHGLIRDSQGRKMS 588 (809)
Q Consensus 509 vld~Wfds~~~~~~~~~~~~~~~~~~~~~~p~d~~~~G~Di~~~w~~~~~~~~~~l~~~~Pf~~v~~hg~vld~~G~KMS 588 (809)
||||||+|++|||+++|||+.+ ++|+.+||.+++.+|+||++||++||+|+|+.++|++||++|++||+|+|.+|+|||
T Consensus 517 VLDTWFSS~L~PfS~lGWP~~t-~d~~~fyP~sllETG~DILfFWVaRMvmLg~kLtG~lPF~~V~LH~mVRDa~GRKMS 595 (995)
T KOG0432|consen 517 VLDTWFSSGLWPFSTLGWPEET-KDFKNFYPLSLLETGHDILFFWVARMVMLGLKLTGELPFKEVLLHGLVRDAHGRKMS 595 (995)
T ss_pred HHHhhhhcccccchhcCCcccc-ccHHhcCCchhhhcCchHHHHHHHHHHHhhhhhcCCCCchheeechhhccccccccc
Confidence 9999999999999999999988 899999999999999999999999999999999999999999999999999999999
Q ss_pred ccccCccChhhHHH-------------------------------------hhCCchHHHHHhhCCC-CCcccccHHHHH
Q 003578 589 KTLGNVIDPIDTIK-------------------------------------EFGADALRFTISLGTA-GQDLSLSIERLT 630 (809)
Q Consensus 589 KS~GN~I~p~dli~-------------------------------------~ygaD~lR~~ll~~~~-~~d~~fs~~~l~ 630 (809)
||+||||+|.|+|+ ++|+|||||.|++... ++|+++|..++.
T Consensus 596 KSLGNVIDPlDVI~Gisle~L~~~L~~gNLdp~Ev~~a~~gq~kdFPnGIpeCGtDALRFaL~s~~~~~~dInLDv~rv~ 675 (995)
T KOG0432|consen 596 KSLGNVIDPLDVIDGISLEKLHAKLLSGNLDPREVEKAKKGQKKDFPNGIPECGTDALRFALCSYTTQGRDINLDVLRVE 675 (995)
T ss_pred hhhccccCHHHHhccccHHHHHHHHHcCCCCHHHHHHHHHHHHhhcCCCCcccchHHHHHHHHHccccCccccccHHHHh
Confidence 99999999999998 4499999999999888 999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHhCCC-CCchhhHHHHhhhccchhhhhcCCC-chhHHHHHHHHHHHHHHHHHhhcCChHHHHH
Q 003578 631 ANKAFTNKLWNAGKFILQNLPS-QNDISRWEILLAYKFDEEECLCKAP-LPECWVVSKLHMLIDTVTASYDKYFFGDVGR 708 (809)
Q Consensus 631 ~~~~~~~kl~N~~~~~~~~l~~-~~~~~~~~~~~~~~~~~~~~~~~l~-~~d~~il~~l~~~~~~v~~a~e~~~f~~a~~ 708 (809)
+++.|+|||||+.+|++..+.. +.+. ...+++..+ ..|+||+++|+..++.+.++|+.|+|..|..
T Consensus 676 g~r~FcNKlWNa~rF~l~~lg~~~~p~------------~~~~~~~~~~~~d~WIlsrL~~av~~~~~~~~~~~f~~at~ 743 (995)
T KOG0432|consen 676 GYRHFCNKLWNATRFALQRLGENFVPS------------PTEDLSGNESLVDEWILSRLAEAVEEVNESLEARNFHLATS 743 (995)
T ss_pred hHHHHHHHHHHHHHHHHHhcccCCCCC------------cccccCCCcchhHHHHHHHHHHHHHHHHhhhhhhhHHHHHH
Confidence 9999999999999999986542 2220 011112112 2899999999999999999999999999999
Q ss_pred HHHHHHHHhhHHHHHHHhhhhhhcCCCcHHHHHHHHHHHHHHHHHHHHhccchhHHHHHHHHHhccCCC----ceEecCC
Q 003578 709 ETYDFFWSDFADWYIEASKARLYRSEYDSDAIIAQAVLLYIFENILKLLHPFMPFVTEELWQSLRKRKE----ALIVSPW 784 (809)
Q Consensus 709 ~i~~f~~~~~~n~Yi~~~k~~l~~~~~~~~~~~~~~~l~~vl~~l~~lL~P~~P~~aeeiw~~L~~~~~----sv~~~~w 784 (809)
++++|+..++|+.|++..|+-++.+ +...+..+..+|+.|+...++||+|||||+||||||+|+..+. |+..++|
T Consensus 744 a~~~Fwl~~lCDVYlE~~Kp~l~~~-~~~~~~~a~~vL~~~ld~gLrll~PfMPFvtEel~qrlP~r~~~~~~si~va~y 822 (995)
T KOG0432|consen 744 ALYAFWLYDLCDVYLEATKPLLWGD-SEALAYEARRVLYRCLDNGLRLLHPFMPFITEELWQRLPRRKGSKPASISVSPY 822 (995)
T ss_pred HHHHHHHHHHHHHHHHHhhHHhcCC-cHHHHHHHHHHHHHHHHHHHHHhcCcccccHHHHHHhcccCCCCCCCceEecCC
Confidence 9999999999999999999988775 4457778899999999999999999999999999999987644 8999999
Q ss_pred CCCC-CcCCHHHHHHHHHHHHHHhhC
Q 003578 785 PQTS-LPRHMSAIKRFENLQSLVILI 809 (809)
Q Consensus 785 P~~~-~~~d~~~~~~~~~~~~~~~~~ 809 (809)
|... ...|+++|.+|+.++++++.+
T Consensus 823 P~~~~~~~~~e~E~~~~~v~~i~~~i 848 (995)
T KOG0432|consen 823 PSSNELWRNEELESAFELVLAITRAI 848 (995)
T ss_pred CchhcccCCHHHHHHHHHHHHHHHHH
Confidence 9444 489999999999999998763
No 4
>PLN02381 valyl-tRNA synthetase
Probab=100.00 E-value=8.6e-168 Score=1522.96 Aligned_cols=739 Identities=46% Similarity=0.860 Sum_probs=679.4
Q ss_pred CCCCCCCCh-hhHHHHHHHHHhcCCCCCCCCCCCCCEEEeCCCCCCCCCCcchhhHHHHHHHHHHHHHHHCCCcccccCC
Q 003578 57 DTLPKTFDF-TSEERIYNWWESQGYFKPNFERGSDPFVISMPPPNVTGSLHMGHAMFVTLEDIMVRYHRMKGRPTLWLPG 135 (809)
Q Consensus 57 ~~~~~~~~~-~~E~~~~~~W~~~~~f~~~~~~~~~~f~i~~~pPy~nG~lHiGH~~~~~~~Di~~Ry~rm~G~~V~~~~G 135 (809)
.+||+.||+ ++|++||++|+++++|++..+.++++|+|++||||+||.|||||+++++++|+++||+||+||+|+|++|
T Consensus 94 ~~~~~~yd~~~iE~~w~~~W~~~~~f~~~~~~~~~~f~i~~ppPy~nG~lHiGHa~~~ti~Dii~Ry~rm~G~~vl~~~G 173 (1066)
T PLN02381 94 SQMAKQYSPSAVEKSWYAWWEKSGYFGADAKSSKPPFVIVLPPPNVTGALHIGHALTAAIEDTIIRWKRMSGYNALWVPG 173 (1066)
T ss_pred hhcccCCCHHHHHHHHHHHHHHCCCccCCccCCCCcEEEEeCCCCCCCCccHHHHHHHHHHHHHHHHHHhCCCcccccCC
Confidence 368899999 8999999999999999987666678899999999999999999999999999999999999999999999
Q ss_pred CCCCCCchHHHHHHHH-HHcCCCccccCHHHHHHHHHHHHHHHHHHHHHHHHHhcccccCCCccccCChhhHHHHHHHHH
Q 003578 136 TDHAGIATQLVVEKML-AAEGIKRVELSRDEFTKRVWEWKEKYGGTITSQIKRLGASCDWTRERFTLDEQLSRAVVEAFI 214 (809)
Q Consensus 136 ~D~~Gl~~~~~~e~~~-~~~g~~~~~~~~~~f~~~~~~~~~~~~~~~~~~l~~lgi~~Dw~~~~~T~d~~~~~~v~~~f~ 214 (809)
|||||||+|.++|+.+ .+.|+++.++++++|+++||+|++++++.|++||++||+++||+|+|+|+||.|+++|+++|.
T Consensus 174 ~D~~Glp~e~~vek~l~~~~~~~~~~~~re~f~~~~~~~~~~~~~~~~~q~~~lG~s~Dw~~~~~T~d~~~~~~v~~~F~ 253 (1066)
T PLN02381 174 VDHAGIATQVVVEKKLMRERHLTRHDIGREEFVSEVWKWKDEYGGTILNQLRRLGASLDWSRECFTMDEQRSKAVTEAFV 253 (1066)
T ss_pred CCCCcChHHHHHHHHhHhhcCCChhhCCHHHHHHHHHHHHHHHHHHHHHHHHHhCchhccCCccccCCHHHHHHHHHHHH
Confidence 9999999999999887 456899999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHcCceeecCcccccCCCCCcccCccccccccCC----------------CceEEEEEEecCCCeeEEEEecCCcccc
Q 003578 215 RLHEKGLIYQGSYMVNWSPNLQTAVSDLEVEYSEEP----------------GTLYYIKYRVAGRSDFLTIATTRPETLF 278 (809)
Q Consensus 215 ~L~~~Gliy~~~~~v~w~p~~~t~lsd~Ev~~~~~~----------------~~~~~~~f~~~~~~~~l~v~Tt~petl~ 278 (809)
+|+++||||++.++|+|||.|+|+|||+||+|.+.. +..++|+|++.+++.+++|||||||||+
T Consensus 254 ~L~~~GlIyr~~~~VnWcP~~~TaLSd~EVey~d~~~~s~~~~~~~~~~~~~g~~~~~~Y~l~~~~~~i~vATtRpEti~ 333 (1066)
T PLN02381 254 RLYKEGLIYRDIRLVNWDCTLRTAISDVEVDYIDIKERTLLKVPGYDKPVEFGVLTSFAYPLEGGLGEIVVATTRIETML 333 (1066)
T ss_pred HHHHCCCEEeccccccCCCCCCCCccHHHhhhhccccchhhcccCCCcceeeEEEEEEEEEecCCCCEEEEecCCHHHHh
Confidence 999999999999999999999999999999998876 5567889998766678999999999999
Q ss_pred CCcEEEECCCCchhhhcccCeeecCCCCCCeeeEEecC-CccccCCCCceeecCCCChhhHHHHHHhCCCceeecCCCCc
Q 003578 279 GDVALAVNPQDEHYSQFIGMMAIVPMTYGRHVPIISDK-YVDKEFGTGVLKISPGHDHNDYLLARKLGLPILNVMNKDGT 357 (809)
Q Consensus 279 ~~~av~v~p~~~~y~~l~g~~~~~P~~~~~~vpi~~~~-~V~~~~GTG~v~~~P~h~~~D~~~~~~~~l~~~~~~~~~G~ 357 (809)
|++||+|||+|++|++|+|+++.||+ .++.+|||++. ||++++|||+||+|||||++||+++++||||+++++|++|.
T Consensus 334 g~~avaV~P~d~ry~~L~G~~~~~Pl-~~~~ipIi~d~~~Vd~e~GTG~V~i~PaHd~~Dy~~~~~~~L~~i~~id~~G~ 412 (1066)
T PLN02381 334 GDTAIAIHPDDERYKHLHGKFAVHPF-NGRKLPIICDAILVDPNFGTGAVKITPAHDPNDFEVGKRHNLEFINIFTDDGK 412 (1066)
T ss_pred cccceeeCCCCcchhhhCCCEEECCC-CCCEEEEEECCccccccCCCCcEEecCCCChHHHHHHHHcCCCeeeeeCCCce
Confidence 99999999999999999999999999 68999999875 99999999999999999999999999999999999999999
Q ss_pred cccccc-ccCCCCHHHHHHHHHHHHHHCCCeeeeecccccCcccccCCCeeEEeeccceeeeccHHHHHHHHHH---hcC
Q 003578 358 LNEVAG-LFRGLDRFEARKKLWSDLEETGLAVKKEPHTLRVPRSQRGGEVIEPLVSKQWFVTMEPLAEKALHAV---EKG 433 (809)
Q Consensus 358 ~~~~~g-~~~G~~~~~a~~~i~~~L~~~g~~~~~~~~~~~~p~c~r~~~~i~~~~~~qwfl~~~~~~~~~~~~~---~~~ 433 (809)
+++++| .|+|+++++||++|+++|++.|++++.+++.|++|+||||++||++++++|||++++++++++++++ .++
T Consensus 413 ~~~~~~~~~~Gl~~~eAr~~Ii~~L~~~g~l~~~~~~~h~~p~c~R~~~~ie~~~~~QWFi~~~~l~~~al~av~~~~~~ 492 (1066)
T PLN02381 413 INSNGGSEFAGMPRFAAREAVIEALQKKGLYRGAKNNEMRLGLCSRTNDVVEPMIKPQWFVNCSSMAKQALDAAIDGENK 492 (1066)
T ss_pred eCCCCccccCCCCHHHHHHHHHHHHHhCCCEecceeeecCCCeeCCCCceEEEeecccceEEchHHHHHHHHHHhhccCC
Confidence 999876 8999999999999999999999999999999999999999999999999999999999999999999 678
Q ss_pred CceEecchhHHHHHHHHhcCCceeeeccccccceeeEEEEc--C-------C-cccEEEcCChhHHHHHHhhhc-CCCcc
Q 003578 434 ELTIMPERFEKIYNHWLSNIKDWCISRQLWWGHRIPVWYIV--G-------K-EEEYIVARNADEALEKAHQKY-GKNVE 502 (809)
Q Consensus 434 ~~~~~P~~~~~~~~~~l~~l~Dw~ISRq~~WG~piP~~~~~--~-------~-~~~~~~~~~~~~~~~~~~~~~-~~~~~ 502 (809)
+++|+|+.+++++.+||++++|||||||||||||||+|||. + . .+.+++..+..+++..+...| +....
T Consensus 493 ~i~~~P~~~~~~~~~wl~n~~DWcISRQr~WG~pIPiw~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 572 (1066)
T PLN02381 493 KLEFIPKQYLAEWKRWLENIRDWCISRQLWWGHRIPAWYVTLEDDQLKELGSYNDHWVVARNESDALLEASQKFPGKKFE 572 (1066)
T ss_pred ceEEEChHHHHHHHHHHhcCccceeeeecccCCccceEEeccChhhcccCCcccceEEEccchHhhcchhhcccCCCccc
Confidence 99999999999999999999999999999999999999994 1 0 135666666666655544344 33346
Q ss_pred ccccCCccceeecccCccceecCCCCCChhhhhhcCCCcEEEeeehhHHhHHHHHHHHHHHhcCCCCceeEEEeeeEEcc
Q 003578 503 IYQDPDVLDTWFSSALWPFSTLGWPDVSADDFKKFYPTTMLETGHDILFFWVARMVMMGIEFTGSVPFSHVYLHGLIRDS 582 (809)
Q Consensus 503 ~~~~~dvld~Wfds~~~~~~~~~~~~~~~~~~~~~~p~d~~~~G~Di~~~w~~~~~~~~~~l~~~~Pf~~v~~hg~vld~ 582 (809)
++|++|||||||||++||++++|||.+. ++|++|||+|++++|+||+|||+++|+++|+.++++.||++|++||+|+|.
T Consensus 573 ~~rd~DVlDtWF~Sg~~p~~~lg~P~~~-~~~~~~~P~d~~~~G~Dii~~W~~rmi~~~~~~~~~~PFk~v~~hG~V~D~ 651 (1066)
T PLN02381 573 LSQDPDVLDTWFSSGLFPLSVLGWPDDT-DDLKAFYPTSVLETGHDILFFWVARMVMMGMQLGGDVPFRKVYLHPMIRDA 651 (1066)
T ss_pred eeecCceeeEEEeCCchHHHHhcCCCCH-HHHhccCCCeeeeecchhhhhHHHHHHHHHHHhCCCCchHHheecceEECC
Confidence 8999999999999999999999999875 789999999999999999999999999999999999999999999999999
Q ss_pred CCCcccccccCccChhhHHH-------------------------------------hhCCchHHHHHhhCCC-CCcccc
Q 003578 583 QGRKMSKTLGNVIDPIDTIK-------------------------------------EFGADALRFTISLGTA-GQDLSL 624 (809)
Q Consensus 583 ~G~KMSKS~GN~I~p~dli~-------------------------------------~ygaD~lR~~ll~~~~-~~d~~f 624 (809)
+|+|||||+||||+|.++|+ +||+|+|||||++.++ ++|++|
T Consensus 652 ~G~KMSKS~GNvIdP~~vi~~~~~~~l~~~~~~~~~~~~e~~~~~~~~~~~~p~gi~~yGADalR~~l~~~~~~~~di~~ 731 (1066)
T PLN02381 652 HGRKMSKSLGNVIDPLEVINGISLEGLHKRLEEGNLDPKELVVAKEGQKKDFPNGIAECGTDALRFALVSYTAQSDKINL 731 (1066)
T ss_pred CCCCCCCCCCCCCCHHHHHhhcchhhHHHhhhccccchhhhhhHhhhccccCCCCccccChHHHHHHHHcCCccccccCc
Confidence 99999999999999999999 7999999999998887 899999
Q ss_pred cHHHHHHHHHHHHHHHHHHHHHHHhCCC-CCchhhHHHHhhhccchhhhhcCCCchhHHHHHHHHHHHHHHHHHhhcCCh
Q 003578 625 SIERLTANKAFTNKLWNAGKFILQNLPS-QNDISRWEILLAYKFDEEECLCKAPLPECWVVSKLHMLIDTVTASYDKYFF 703 (809)
Q Consensus 625 s~~~l~~~~~~~~kl~N~~~~~~~~l~~-~~~~~~~~~~~~~~~~~~~~~~~l~~~d~~il~~l~~~~~~v~~a~e~~~f 703 (809)
+.+.+.+.++|+++|||+++|+++++.+ +.+. ...+...++..|+|++++|+.+++++.++|++|+|
T Consensus 732 ~~~~v~~~r~f~nKlwNa~rf~~~~~~~~~~~~------------~~~~~~~~~~~DrWILskL~~~i~~v~~~~e~y~F 799 (1066)
T PLN02381 732 DILRVVGYRQWCNKLWNAVRFAMSKLGDDYTPP------------ATLSVETMPFSCKWILSVLNKAISKTVSSLDAYEF 799 (1066)
T ss_pred cHHHHHHHHHHHHHHHHHHHHHHhhcccccCcc------------cccCccccCHHHHHHHHHHHHHHHHHHHHHHhCCH
Confidence 9999999999999999999998877642 1110 00011234568999999999999999999999999
Q ss_pred HHHHHHHHHHHHHhhHHHHHHHhhhhhhcCCC--cHHHHHHHHHHHHHHHHHHHHhccchhHHHHHHHHHhcc-----CC
Q 003578 704 GDVGRETYDFFWSDFADWYIEASKARLYRSEY--DSDAIIAQAVLLYIFENILKLLHPFMPFVTEELWQSLRK-----RK 776 (809)
Q Consensus 704 ~~a~~~i~~f~~~~~~n~Yi~~~k~~l~~~~~--~~~~~~~~~~l~~vl~~l~~lL~P~~P~~aeeiw~~L~~-----~~ 776 (809)
+.|++++++|+++++||+||+..|+|++.++. ...+++++.+|+.++..+++||+|||||+|||||+.|+. .+
T Consensus 800 ~~A~~~l~~F~~~dl~d~Yie~~K~~l~~~~~~~~~~r~~a~~~L~~vL~~llrLL~PfmPfitEELw~~L~~~~~~~~~ 879 (1066)
T PLN02381 800 SDAASTVYSWWQYQFCDVFIEAIKPYFAGDNPEFASERAAAQDTLWICLDTGLRLLHPFMPFVTEELWQRLPQPKDHTRK 879 (1066)
T ss_pred HHHHHHHHHHHHHHhHHHHHHHhHHHHccCCccccHHHHHHHHHHHHHHHHHHHHHHhHhHHHHHHHHHHhhhhccCCCC
Confidence 99999999999999999999999999987532 235667889999999999999999999999999999974 23
Q ss_pred CceEecCCCCCCC-cCCHHHHHHHHHHHHHHhhC
Q 003578 777 EALIVSPWPQTSL-PRHMSAIKRFENLQSLVILI 809 (809)
Q Consensus 777 ~sv~~~~wP~~~~-~~d~~~~~~~~~~~~~~~~~ 809 (809)
+||+.++||.++. .+|+++++.|+.++++++.+
T Consensus 880 ~SI~~~~~P~~~~~~~d~~le~~~~~l~~ii~~i 913 (1066)
T PLN02381 880 DSIMISEYPSAVEAWTNEKVEYEMDLVLSTVKCL 913 (1066)
T ss_pred CeeEeCCCCCCCchhCCHHHHHHHHHHHHHHHHH
Confidence 6999999999985 78999999999999998753
No 5
>PTZ00419 valyl-tRNA synthetase-like protein; Provisional
Probab=100.00 E-value=7.3e-167 Score=1525.57 Aligned_cols=748 Identities=47% Similarity=0.878 Sum_probs=684.0
Q ss_pred CCCCCCCCCCh-hhHHHHHHHHHhcCCCCCCC----CCCCCCEEEeCCCCCCCCCCcchhhHHHHHHHHHHHHHHHCCCc
Q 003578 55 NKDTLPKTFDF-TSEERIYNWWESQGYFKPNF----ERGSDPFVISMPPPNVTGSLHMGHAMFVTLEDIMVRYHRMKGRP 129 (809)
Q Consensus 55 ~~~~~~~~~~~-~~E~~~~~~W~~~~~f~~~~----~~~~~~f~i~~~pPy~nG~lHiGH~~~~~~~Di~~Ry~rm~G~~ 129 (809)
-+.++|+.||+ ++|++||++|+++++|++.. +.++++|+|++|||||||.|||||+++++++|+++||+||+|++
T Consensus 20 ~~~~~~~~yd~~~iE~~~~~~W~~~~~f~~~~~~~~~~~~~~f~i~~ppP~~~G~lHiGHa~~~~~~D~~~Ry~rm~G~~ 99 (995)
T PTZ00419 20 NISSMAASYDPKEVESGWYEWWEKSGFFKPAEDAKSLNSGKKFVIVLPPPNVTGYLHIGHALTGAIQDSLIRYHRMKGDE 99 (995)
T ss_pred chhhcCCCCCHHHHHHHHHHHHHHCCCcccCccccccCCCCeEEEEeCCCCCCCCCcHHHHHHHHHHHHHHHHHHhcCCc
Confidence 34568899999 89999999999999999852 33578899999999999999999999999999999999999999
Q ss_pred ccccCCCCCCCCchHHHHHHHH-HHcCCCccccCHHHHHHHHHHHHHHHHHHHHHHHHHhcccccCCCccccCChhhHHH
Q 003578 130 TLWLPGTDHAGIATQLVVEKML-AAEGIKRVELSRDEFTKRVWEWKEKYGGTITSQIKRLGASCDWTRERFTLDEQLSRA 208 (809)
Q Consensus 130 V~~~~G~D~~Gl~~~~~~e~~~-~~~g~~~~~~~~~~f~~~~~~~~~~~~~~~~~~l~~lgi~~Dw~~~~~T~d~~~~~~ 208 (809)
|+|++||||||||+|.+||+.+ .+.|+++.++++++|+++||+|++++++.|++||++||+++||+|+|+|+||+|.++
T Consensus 100 v~~~~G~D~~Gl~~~~~vE~~l~~~~~~~~~~~~~e~f~~~~~~w~~~~~~~~~~~~~~lG~~~DW~~~~~T~d~~~~~~ 179 (995)
T PTZ00419 100 TLWVPGTDHAGIATQVVVEKKLMKEENKTRHDLGREEFLKKVWEWKDKHGNNICNQLRRLGSSLDWSREVFTMDEQRSKA 179 (995)
T ss_pred ccCCCCCCCCchhhHHHHHHHHHHhcCCChHHcCHHHHHHHHHHHHHHHHHHHHHHHHHhCceeeCCCCcCcCCHHHHHH
Confidence 9999999999999999999987 567999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHcCceeecCcccccCCCCCcccCccccccccCC----------------CceEEEEEEecCCCe-eEEEEe
Q 003578 209 VVEAFIRLHEKGLIYQGSYMVNWSPNLQTAVSDLEVEYSEEP----------------GTLYYIKYRVAGRSD-FLTIAT 271 (809)
Q Consensus 209 v~~~f~~L~~~Gliy~~~~~v~w~p~~~t~lsd~Ev~~~~~~----------------~~~~~~~f~~~~~~~-~l~v~T 271 (809)
|+++|.+|+++||||++.++|+|||.|+|+|||+||+|.+.. |.++||+|++.+++. +|+|||
T Consensus 180 v~~~F~~l~~~Gliyr~~~~V~wcp~~~Talsd~EVe~~~~~~~~~~~~~~~~~~~~~g~l~~i~f~l~~~~~~~l~vaT 259 (995)
T PTZ00419 180 VKEAFVRLYEDGLIYRDTRLVNWCCYLKTAISDIEVEFEEIEKPTKITIPGYDKKVEVGVLWHFAYPLEDSGQEEIVVAT 259 (995)
T ss_pred HHHHHHHHHHCCCEEecceeeecCCCCCCCCchhhcccccccccceeeccccccccccceeEEEEEeecCCCCcEEEEEe
Confidence 999999999999999999999999999999999999999877 777899999987665 999999
Q ss_pred cCCccccCCcEEEECCCCchhhhcccCeeecCCCCCCeeeEEecC-CccccCCCCceeecCCCChhhHHHHHHhCCCcee
Q 003578 272 TRPETLFGDVALAVNPQDEHYSQFIGMMAIVPMTYGRHVPIISDK-YVDKEFGTGVLKISPGHDHNDYLLARKLGLPILN 350 (809)
Q Consensus 272 t~petl~~~~av~v~p~~~~y~~l~g~~~~~P~~~~~~vpi~~~~-~V~~~~GTG~v~~~P~h~~~D~~~~~~~~l~~~~ 350 (809)
||||||+||+||||||+|++|++|+|+++.||+..++.+||++++ ||++++|||+||+|||||++||+++++||||+++
T Consensus 260 TrPeTl~g~~avav~P~d~~y~~l~G~~~~~Pl~~~~~ipii~~~~~V~~~~GTG~V~~~Pahd~~D~~~~~~~~L~~~~ 339 (995)
T PTZ00419 260 TRIETMLGDVAVAVHPKDERYKKLHGKELIHPFIPDRKIPIIADDELVDMEFGTGAVKITPAHDPNDYEIAKRHNLPFIN 339 (995)
T ss_pred CCcchhhhCeEEEECCCCcHHHHhcCCEEECCccCCCEEEEEeCCcccCCCcCCCCeEeCCCCChHHHHHHHHcCCCeee
Confidence 999999999999999999999999999999999448999999999 9999999999999999999999999999999999
Q ss_pred ecCCCCcccccccccCCCCHHHHHHHHHHHHHHCCCeeeeecccccCcccccCCCeeEEeeccceeeeccHHHHHHHHHH
Q 003578 351 VMNKDGTLNEVAGLFRGLDRFEARKKLWSDLEETGLAVKKEPHTLRVPRSQRGGEVIEPLVSKQWFVTMEPLAEKALHAV 430 (809)
Q Consensus 351 ~~~~~G~~~~~~g~~~G~~~~~a~~~i~~~L~~~g~~~~~~~~~~~~p~c~r~~~~i~~~~~~qwfl~~~~~~~~~~~~~ 430 (809)
++|++|++++++|.|+|+++++||++|+++|+++|++++.+++.|++|+|||||++|++++++||||+|+++++++++++
T Consensus 340 ~i~~~G~~~~~~~~~~Gl~~~~ar~~ii~~L~~~g~l~~~~~~~~~~p~~~R~~~~ie~~~~~QWFi~~~~~~~~al~~v 419 (995)
T PTZ00419 340 IFTLDGKINENGGEFAGMHRFDCRRKIEEELKEMGLLRDKVPNPMRLPRCSRSGDIVEPMLIPQWYVNCKDMAKRAVEAV 419 (995)
T ss_pred eeCCCceEcCCCcccCCCCHHHHHHHHHHHHHhcCCEEeeEEeecCCCEeCCCCCEEEEEecCeeeEecHHHHHHHHHHh
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hcCCceEecchhHHHHHHHHhcCCceeeeccccccceeeEEEEcCC--------cccEEEcCChhHHHHHHhhhcC---C
Q 003578 431 EKGELTIMPERFEKIYNHWLSNIKDWCISRQLWWGHRIPVWYIVGK--------EEEYIVARNADEALEKAHQKYG---K 499 (809)
Q Consensus 431 ~~~~~~~~P~~~~~~~~~~l~~l~Dw~ISRq~~WG~piP~~~~~~~--------~~~~~~~~~~~~~~~~~~~~~~---~ 499 (809)
++++++|+|+..++++.+||++++||||||||+||||||+|||..+ .+.+++..+.++++..+...++ +
T Consensus 420 ~~~~i~~~P~~~~~~~~~wl~~l~DWcISRQr~WG~pIP~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 499 (995)
T PTZ00419 420 RNGELKIIPSSHENVWYHWLENIQDWCISRQLWWGHRIPAYRVISKGPETDPSDEEPWVVARSEEEALEKAKKKFGLSEE 499 (995)
T ss_pred hcCCeEEEChHHHHHHHHHHhccccceeeeecccCceeeEEEeCCCCccccCCCCceEEEcCCHHHHHhhhccccCCccc
Confidence 9999999999999999999999999999999999999999999642 2346667777777665544332 2
Q ss_pred CccccccCCccceeecccCccceecCCCCCChhhhhhcCCCcEEEeeehhHHhHHHHHHHHHHHhcCCCCceeEEEeeeE
Q 003578 500 NVEIYQDPDVLDTWFSSALWPFSTLGWPDVSADDFKKFYPTTMLETGHDILFFWVARMVMMGIEFTGSVPFSHVYLHGLI 579 (809)
Q Consensus 500 ~~~~~~~~dvld~Wfds~~~~~~~~~~~~~~~~~~~~~~p~d~~~~G~Di~~~w~~~~~~~~~~l~~~~Pf~~v~~hg~v 579 (809)
+..++|++|||||||||++||++++|||.++ .+|++|||+|++++|+||+|||+++|+++++.+++++||++|++||++
T Consensus 500 ~~~~~~~~DVlDtWFdS~l~p~~~~g~p~~~-~~~~~~~P~d~~~~G~Dii~~W~arm~~~~~~~~~~~Pfk~v~~HG~v 578 (995)
T PTZ00419 500 DFELEQDEDVLDTWFSSGLFPFSTLGWPDQT-DDLQRFFPTSLLETGSDILFFWVARMVMMSLHLTDKLPFKTVFLHAMV 578 (995)
T ss_pred cCCeEECCceEEEEEeCCHHHHHHhCCCCCh-HHHhhcCCCcEEEechhHHhHHHHHHHHHHHHhcCCCChHHHhccceE
Confidence 3568999999999999999999999999865 679999999999999999999999999999999999999999999999
Q ss_pred EccCCCcccccccCccChhhHHH-------------------------------------hhCCchHHHHHhhCCC-CCc
Q 003578 580 RDSQGRKMSKTLGNVIDPIDTIK-------------------------------------EFGADALRFTISLGTA-GQD 621 (809)
Q Consensus 580 ld~~G~KMSKS~GN~I~p~dli~-------------------------------------~ygaD~lR~~ll~~~~-~~d 621 (809)
+|.+|+|||||+||||+|.++++ +||+|++||||++... ++|
T Consensus 579 ~d~~G~KMSKSlGNvIdP~~ii~~~~~~~l~~~~~~~~~~~~e~~~~~~~~~~~f~~gi~~yGaDalR~~l~~~~~~~~D 658 (995)
T PTZ00419 579 RDSQGEKMSKSKGNVIDPLEVIEGISLQDLNQKLYEGNLPEKEIKRAIELQKKEFPNGIPECGTDALRFGLLAYTQQGRN 658 (995)
T ss_pred ECCCCCCcccCCCCcCChHHHhcccchhhHHHhhhccccchhhhhhHhhhhhccCCCCCcccCcHHHHHHHHhcCCCCCC
Confidence 99999999999999999999999 8999999999998777 999
Q ss_pred ccccHHHHHHHHHHHHHHHHHHHHHHHhCCCCCchhhHHHHhhhccchhhhhcCCCchhHHHHHHHHHHHHHHHHHhhcC
Q 003578 622 LSLSIERLTANKAFTNKLWNAGKFILQNLPSQNDISRWEILLAYKFDEEECLCKAPLPECWVVSKLHMLIDTVTASYDKY 701 (809)
Q Consensus 622 ~~fs~~~l~~~~~~~~kl~N~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~~d~~il~~l~~~~~~v~~a~e~~ 701 (809)
++|+.+.+...++|+|+|||+++|+++++.+...... ...........+...|+|++++++.+++.+.++|++|
T Consensus 659 i~~~~~~v~~~~~f~nklwN~~rf~~~~~~~~~~~~~------~~~~~~~~~~~~~~~D~wIls~L~~~i~~v~~~~e~y 732 (995)
T PTZ00419 659 INLDINRVVGYRHFCNKLWNAVKFALMKLLKDFNLPN------STLFKPNNVESLPWEDKWILHRLNVAIKEVTEGFKEY 732 (995)
T ss_pred ccccHHHHHHHHHHHHHHHHHHHHHHhcccccccccc------cccccccccccCCHHHHHHHHHHHHHHHHHHHHHHcc
Confidence 9999999999999999999999999887654221000 0000000012345679999999999999999999999
Q ss_pred ChHHHHHHHHHHHHHhhHHHHHHHhhhhhhcCCCcHHHHHHHHHHHHHHHHHHHHhccchhHHHHHHHHHhcc---CCCc
Q 003578 702 FFGDVGRETYDFFWSDFADWYIEASKARLYRSEYDSDAIIAQAVLLYIFENILKLLHPFMPFVTEELWQSLRK---RKEA 778 (809)
Q Consensus 702 ~f~~a~~~i~~f~~~~~~n~Yi~~~k~~l~~~~~~~~~~~~~~~l~~vl~~l~~lL~P~~P~~aeeiw~~L~~---~~~s 778 (809)
+|+.|++.+++|+++++||+||+.+|+|++...+...+++++.+++.+++.+++||+|||||+||+||++|+. .++|
T Consensus 733 ~f~~A~~~i~~F~~~~~~n~Yie~~K~~l~~~~~~~~~~~~~~~L~~vL~~~l~LL~PfmPfitEElw~~L~~~~~~~~s 812 (995)
T PTZ00419 733 DFSEATQATYNFWLYELCDVYLELIKPRLSKQSDGERKQHAQDVLHTVLDIGLRLLHPMMPFITEELYQRLPNYLRKSES 812 (995)
T ss_pred CHHHHHHHHHHHHHHhhHHHHHHHhhhhhhcCCCcHHHHHHHHHHHHHHHHHHHHHhhhhhhhHHHHHHhhhccCCCCCe
Confidence 9999999999999999999999999999843334345677899999999999999999999999999999974 2469
Q ss_pred eEecCCCCCCC-cCCHHHHHHHHHHHHHHhhC
Q 003578 779 LIVSPWPQTSL-PRHMSAIKRFENLQSLVILI 809 (809)
Q Consensus 779 v~~~~wP~~~~-~~d~~~~~~~~~~~~~~~~~ 809 (809)
|+.++||.++. ..|++++..|+.++++++.+
T Consensus 813 i~~~~~P~~~~~~~d~~~e~~~~~~~~ii~~i 844 (995)
T PTZ00419 813 ISIAKYPQPNPGWNNEALDEEMKIIMSIVKSI 844 (995)
T ss_pred eeccCCCCCCcccCCHHHHHHHHHHHHHHHHH
Confidence 99999999984 78999999999999998763
No 6
>PRK05729 valS valyl-tRNA synthetase; Reviewed
Probab=100.00 E-value=2.1e-166 Score=1505.92 Aligned_cols=723 Identities=56% Similarity=1.032 Sum_probs=671.9
Q ss_pred CCCCCCCCh-hhHHHHHHHHHhcCCCCCCCCCCCCCEEEeCCCCCCCCCCcchhhHHHHHHHHHHHHHHHCCCcccccCC
Q 003578 57 DTLPKTFDF-TSEERIYNWWESQGYFKPNFERGSDPFVISMPPPNVTGSLHMGHAMFVTLEDIMVRYHRMKGRPTLWLPG 135 (809)
Q Consensus 57 ~~~~~~~~~-~~E~~~~~~W~~~~~f~~~~~~~~~~f~i~~~pPy~nG~lHiGH~~~~~~~Di~~Ry~rm~G~~V~~~~G 135 (809)
.++|+.|++ ++|++||++|+++++|++..+. +++|+|++||||+||.|||||+++++++|+++||+||+|++|+|++|
T Consensus 3 ~~~~~~y~~~~~E~~~~~~W~~~~~f~~~~~~-~~~f~i~~ppP~~~G~lHiGHa~~~~~~D~~~Ry~rm~G~~vl~~~G 81 (874)
T PRK05729 3 MELPKTYDPKEVEAKWYQKWEEKGYFKPDDNS-KKPFSIVIPPPNVTGSLHMGHALNNTLQDILIRYKRMQGYNTLWLPG 81 (874)
T ss_pred CcCCCCCCHHHHHHHHHHHHHHCCCcccCcCC-CCCEEEecCCCCCCCcchHHHHHHHHHHHHHHHHHHhCCCcccCCCC
Confidence 468899999 8999999999999999997653 55699999999999999999999999999999999999999999999
Q ss_pred CCCCCCchHHHHHHHHHHcCCCccccCHHHHHHHHHHHHHHHHHHHHHHHHHhcccccCCCccccCChhhHHHHHHHHHH
Q 003578 136 TDHAGIATQLVVEKMLAAEGIKRVELSRDEFTKRVWEWKEKYGGTITSQIKRLGASCDWTRERFTLDEQLSRAVVEAFIR 215 (809)
Q Consensus 136 ~D~~Gl~~~~~~e~~~~~~g~~~~~~~~~~f~~~~~~~~~~~~~~~~~~l~~lgi~~Dw~~~~~T~d~~~~~~v~~~f~~ 215 (809)
|||||+|+|.++|+.++++|+++.+++|++|+++||+|++++++.|++||++||+++||+|+|+|+|+.|.++|+++|.+
T Consensus 82 ~D~~Gi~~e~~ve~~l~~~g~~~~~~~re~f~~~~~~w~~~~~~~~~~~~~~lG~s~Dw~r~~~T~d~~~~~~v~~~F~~ 161 (874)
T PRK05729 82 TDHAGIATQMVVERQLAAEGKSRHDLGREKFLEKVWEWKEESGGTITNQLRRLGASCDWSRERFTMDEGLSKAVREVFVR 161 (874)
T ss_pred CCccchhhHHHHHHHHHhcCCChHHCCHHHHHHHHHHHHHHHHHHHHHHHHHhCcceecCCCcccCCHHHHHHHHHHHHH
Confidence 99999999999999998889999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHcCceeecCcccccCCCCCcccCccccccccCCCceEEEEEEecCCCeeEEEEecCCccccCCcEEEECCCCchhhhc
Q 003578 216 LHEKGLIYQGSYMVNWSPNLQTAVSDLEVEYSEEPGTLYYIKYRVAGRSDFLTIATTRPETLFGDVALAVNPQDEHYSQF 295 (809)
Q Consensus 216 L~~~Gliy~~~~~v~w~p~~~t~lsd~Ev~~~~~~~~~~~~~f~~~~~~~~l~v~Tt~petl~~~~av~v~p~~~~y~~l 295 (809)
|+++||||++.++|+|||.|+|+|||+||+|++..+.++||+|++.+++.+++|||||||||+||+||||||+|++|++|
T Consensus 162 L~~~GlIyr~~~~v~wcp~~~talsd~EV~~~~~~~~~~~i~f~~~~~~~~l~vaTtrPeTl~~~~avaV~P~d~ry~~l 241 (874)
T PRK05729 162 LYEKGLIYRGKRLVNWDPKLQTALSDLEVEYKEVKGKLWHIRYPLADGSDYLVVATTRPETMLGDTAVAVNPEDERYKHL 241 (874)
T ss_pred HHHCCCEeecCcccccCCCCCCcchhhhcccccccceEEEEEEEecCCCcEEEEEeCCcchhhcCeeEeECCCccHHHHh
Confidence 99999999999999999999999999999999999999999999998889999999999999999999999999999999
Q ss_pred ccCeeecCCCCCCeeeEEecCCccccCCCCceeecCCCChhhHHHHHHhCCCceeecCCCCcccccccccCCCCHHHHHH
Q 003578 296 IGMMAIVPMTYGRHVPIISDKYVDKEFGTGVLKISPGHDHNDYLLARKLGLPILNVMNKDGTLNEVAGLFRGLDRFEARK 375 (809)
Q Consensus 296 ~g~~~~~P~~~~~~vpi~~~~~V~~~~GTG~v~~~P~h~~~D~~~~~~~~l~~~~~~~~~G~~~~~~g~~~G~~~~~a~~ 375 (809)
+|+++++|+ .++.+|||+++||++++|||+||+||+||++||+++++||||+++++|++|++++++|.|+||++++||+
T Consensus 242 ~g~~~~~P~-~~~~ipii~~~~V~~~~GTG~V~~~Pah~~~D~~~~~~~~l~~~~~i~~~G~~~~~~~~~~G~~~~~ar~ 320 (874)
T PRK05729 242 IGKTVILPL-VGREIPIIADEYVDPEFGTGAVKITPAHDPNDFEVGKRHNLPMINIMDEDGTINENPGEYQGLDRFEARK 320 (874)
T ss_pred cCCEEECCC-CCCeeeEecCccCCCCCCCcceEecCCCCHHHHHHHHHcCCCcccccCCCCeEcCCCcccCCCCHHHHHH
Confidence 999999999 5999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHCCCeeeeecccccCcccccCCCeeEEeeccceeeeccHHHHHHHHHHhcCCceEecchhHHHHHHHHhcCCc
Q 003578 376 KLWSDLEETGLAVKKEPHTLRVPRSQRGGEVIEPLVSKQWFVTMEPLAEKALHAVEKGELTIMPERFEKIYNHWLSNIKD 455 (809)
Q Consensus 376 ~i~~~L~~~g~~~~~~~~~~~~p~c~r~~~~i~~~~~~qwfl~~~~~~~~~~~~~~~~~~~~~P~~~~~~~~~~l~~l~D 455 (809)
+|+++|+++|++.+.+++.|++|+|||||++|++++++||||+++++++++++++++++++|+|+..++++.+||++++|
T Consensus 321 ~i~~~L~~~g~l~~~~~~~~~~p~~~R~~~~i~~~~~~QWFi~~~~~~~~~~~~v~~~~i~~~P~~~~~~~~~wl~~l~D 400 (874)
T PRK05729 321 AIVADLEELGLLVKIEPHTHSVGHSDRSGVVIEPYLSDQWFVKMKPLAKPALEAVENGEIKFVPERWEKTYFHWMENIQD 400 (874)
T ss_pred HHHHHHHhCCCeeeeEEeeccCCeeCCCCceEEEEecCcceEehHHHHHHHHHHHhcCCcEEEChHHHHHHHHHHhcCcc
Confidence 99999999999999999999999999999999999999999999999999999999889999999999999999999999
Q ss_pred eeeeccccccceeeEEEEcCCcccEEEcCChhHHHHHHhhhcCCCccccccCCccceeecccCccceecCCCCCChhhhh
Q 003578 456 WCISRQLWWGHRIPVWYIVGKEEEYIVARNADEALEKAHQKYGKNVEIYQDPDVLDTWFSSALWPFSTLGWPDVSADDFK 535 (809)
Q Consensus 456 w~ISRq~~WG~piP~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dvld~Wfds~~~~~~~~~~~~~~~~~~~ 535 (809)
|||||||+||||||+|+|.+ + .+.+.....+ .+ ....+.+++|||||||||++||++++|||.++ .+|+
T Consensus 401 WcISRq~~WG~pIP~~~~~~-~-~~~v~~~~~~-------~~-~~~~~~~~~DvlDtWfsS~l~~~~~lgwp~~~-~~~~ 469 (874)
T PRK05729 401 WCISRQLWWGHRIPAWYDED-G-EVYVGREEPE-------AR-EKALLTQDEDVLDTWFSSALWPFSTLGWPEKT-EDLK 469 (874)
T ss_pred ceeeeecccCCcccEEEeCC-C-cEEeCCcccc-------cc-cccCeEeCCceecceecCCccHHHHhCCCCCc-HHHH
Confidence 99999999999999999964 2 2333332211 01 11248899999999999999999999999765 7899
Q ss_pred hcCCCcEEEeeehhHHhHHHHHHHHHHHhcCCCCceeEEEeeeEEccCCCcccccccCccChhhHHHhhCCchHHHHHhh
Q 003578 536 KFYPTTMLETGHDILFFWVARMVMMGIEFTGSVPFSHVYLHGLIRDSQGRKMSKTLGNVIDPIDTIKEFGADALRFTISL 615 (809)
Q Consensus 536 ~~~p~d~~~~G~Di~~~w~~~~~~~~~~l~~~~Pf~~v~~hg~vld~~G~KMSKS~GN~I~p~dli~~ygaD~lR~~ll~ 615 (809)
+|||+|++++|+||++||+++|+++++.+++++||++|++||+++|.+|+|||||+||+|+|.|++++||+|++||||++
T Consensus 470 ~~~P~d~~~~G~Dii~~W~a~~~~~~~~~~~~~Pfk~v~~hG~v~d~~G~KMSKSlGNvIdP~dvi~~yGaDalR~~ll~ 549 (874)
T PRK05729 470 RFYPTSVLVTGFDIIFFWVARMIMMGLHFTGQVPFKDVYIHGLVRDEQGRKMSKSKGNVIDPLDLIDKYGADALRFTLAA 549 (874)
T ss_pred hcCCcccccccccccchHHHHHHHHHHHhcCCCchhheEEeeeEECCCCCCcccCCCCCCCHHHHHHHhChHHHHHHHHh
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999998
Q ss_pred CCC-CCcccccHHHHHHHHHHHHHHHHHHHHHHHhCCCCCchhhHHHHhhhccchhhhhcCCCchhHHHHHHHHHHHHHH
Q 003578 616 GTA-GQDLSLSIERLTANKAFTNKLWNAGKFILQNLPSQNDISRWEILLAYKFDEEECLCKAPLPECWVVSKLHMLIDTV 694 (809)
Q Consensus 616 ~~~-~~d~~fs~~~l~~~~~~~~kl~N~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~~d~~il~~l~~~~~~v 694 (809)
.+. ++|++|+++.+.+.++++|+|||+.+|+..++.+... .. ......++..|+|++++++.+++.+
T Consensus 550 ~~~~~~Di~fs~~~l~~~~~~~nkl~N~~Rf~~~~~~~~~~-~~-----------~~~~~~~~~~D~wil~~l~~~~~~v 617 (874)
T PRK05729 550 LASPGRDIRFDEERVEGYRNFANKLWNASRFVLMNLEGADV-GE-----------LPDPEELSLADRWILSRLNRTVAEV 617 (874)
T ss_pred CCCCCCCceeCHHHHHHHHHHHHHHHHHHHHHHHhcccCCc-cc-----------ccccccCCHHHHHHHHHHHHHHHHH
Confidence 866 9999999999999999999999999998776543221 00 0011234568999999999999999
Q ss_pred HHHhhcCChHHHHHHHHHHHHHhhHHHHHHHhhhhhhcCCCcHHHHHHHHHHHHHHHHHHHHhccchhHHHHHHHHHhcc
Q 003578 695 TASYDKYFFGDVGRETYDFFWSDFADWYIEASKARLYRSEYDSDAIIAQAVLLYIFENILKLLHPFMPFVTEELWQSLRK 774 (809)
Q Consensus 695 ~~a~e~~~f~~a~~~i~~f~~~~~~n~Yi~~~k~~l~~~~~~~~~~~~~~~l~~vl~~l~~lL~P~~P~~aeeiw~~L~~ 774 (809)
.++|++|+|+.|++.+++|+++++||+||+.+|+|++ + + .++.++.+++.+++.+++||+|||||+||+||++|+.
T Consensus 618 ~~~~e~y~f~~a~~~l~~f~~~~~~~~Yle~~k~~l~-~-~--~~~~~~~~l~~~l~~~~~lL~Pf~PfitEelw~~l~~ 693 (874)
T PRK05729 618 TEALDKYRFDEAARALYEFIWNEFCDWYLELAKPVLQ-E-A--AKRATRATLAYVLEQILRLLHPFMPFITEELWQKLAP 693 (874)
T ss_pred HHHHHccCHHHHHHHHHHHHHHHHHHHHHHHHHHHhh-h-h--HHHHHHHHHHHHHHHHHHHHcccchhhHHHHHHhccc
Confidence 9999999999999999999988999999999999987 2 2 2667889999999999999999999999999999986
Q ss_pred CC--CceEecCCCCCCC-cCCHHHHHHHHHHHHHHhhC
Q 003578 775 RK--EALIVSPWPQTSL-PRHMSAIKRFENLQSLVILI 809 (809)
Q Consensus 775 ~~--~sv~~~~wP~~~~-~~d~~~~~~~~~~~~~~~~~ 809 (809)
.+ +||+.++||+.+. . |++++..|+.++++++++
T Consensus 694 ~~~~~si~~~~~P~~~~~~-~~~~~~~~~~~~~ii~~i 730 (874)
T PRK05729 694 LGIEESIMLAPWPEADEAI-DEAAEAEFEWLKELITAI 730 (874)
T ss_pred CCCCCceeecCCCCCCccc-CHHHHHHHHHHHHHHHHH
Confidence 42 4899999999885 5 889999999999988763
No 7
>TIGR00422 valS valyl-tRNA synthetase. The valyl-tRNA synthetase (ValS) is a class I amino acyl-tRNA ligase and is particularly closely related to the isoleucyl tRNA synthetase.
Probab=100.00 E-value=8.3e-166 Score=1502.41 Aligned_cols=732 Identities=54% Similarity=0.998 Sum_probs=684.0
Q ss_pred CCCCCCh-hhHHHHHHHHHhcCCCCCCCCCCCCCEEEeCCCCCCCCCCcchhhHHHHHHHHHHHHHHHCCCcccccCCCC
Q 003578 59 LPKTFDF-TSEERIYNWWESQGYFKPNFERGSDPFVISMPPPNVTGSLHMGHAMFVTLEDIMVRYHRMKGRPTLWLPGTD 137 (809)
Q Consensus 59 ~~~~~~~-~~E~~~~~~W~~~~~f~~~~~~~~~~f~i~~~pPy~nG~lHiGH~~~~~~~Di~~Ry~rm~G~~V~~~~G~D 137 (809)
||+.|++ ++|++||++|+++++|++..+.++++|+|++||||+||.|||||+++++++|+++||+||+|++|+|++|||
T Consensus 1 ~~~~y~~~~iE~~~~~~W~~~~~f~~~~~~~~~~f~i~~ppPy~nG~lHiGH~~~~~~~D~~~Ry~rm~G~~vl~~~G~D 80 (861)
T TIGR00422 1 MPKDYDPHEVEKKWYKKWEKSGFFKPDGNSNKPPFCIDIPPPNVTGSLHIGHALNWSIQDIIARYKRMKGYNVLWLPGTD 80 (861)
T ss_pred CCCCCCHHHHHHHHHHHHHHCCCcccCcccCCCeEEEEeCCCCCCCCCcHHHhHHHHHHHHHHHHHHhcCCcccCCCCcC
Confidence 5788999 899999999999999999876667889999999999999999999999999999999999999999999999
Q ss_pred CCCCchHHHHHHHHHHcCCCccccCHHHHHHHHHHHHHHHHHHHHHHHHHhcccccCCCccccCChhhHHHHHHHHHHHH
Q 003578 138 HAGIATQLVVEKMLAAEGIKRVELSRDEFTKRVWEWKEKYGGTITSQIKRLGASCDWTRERFTLDEQLSRAVVEAFIRLH 217 (809)
Q Consensus 138 ~~Gl~~~~~~e~~~~~~g~~~~~~~~~~f~~~~~~~~~~~~~~~~~~l~~lgi~~Dw~~~~~T~d~~~~~~v~~~f~~L~ 217 (809)
|||+|||.+||+.+.+.|+++.++++++|+++|++|++++++.|++||++||+|+||+|+|+|+|+.|.++|+++|.+|+
T Consensus 81 ~~Glp~e~~vek~~~~~g~~~~~~~~e~f~~~~~~~~~~~~~~~~~~~~~lG~s~Dw~r~~~T~d~~~~~~v~~~F~~L~ 160 (861)
T TIGR00422 81 HAGIATQVKVEKKLGAEGKTKHDLGREEFREKIWEWKEESGGTIKNQIKRLGASLDWSRERFTMDEGLSKAVKEAFVRLY 160 (861)
T ss_pred cCCCcHHHHHHHHhcccCCchhhCCHHHHHHHHHHHHHHHHHHHHHHHHHhCeeeecCCCcCcCCHHHHHHHHHHHHHHH
Confidence 99999999999999888999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HcCceeecCcccccCCCCCcccCccccccccCCCceEEEEEEecCCC-eeEEEEecCCccccCCcEEEECCCCchhhhcc
Q 003578 218 EKGLIYQGSYMVNWSPNLQTAVSDLEVEYSEEPGTLYYIKYRVAGRS-DFLTIATTRPETLFGDVALAVNPQDEHYSQFI 296 (809)
Q Consensus 218 ~~Gliy~~~~~v~w~p~~~t~lsd~Ev~~~~~~~~~~~~~f~~~~~~-~~l~v~Tt~petl~~~~av~v~p~~~~y~~l~ 296 (809)
++|+||++.++|+|||.|+|+|||+||+|++..++++|++|++.+++ .+|+|||||||||+||+||||||+|++|++|+
T Consensus 161 ~~GlIy~~~~~v~wcp~~~t~lsd~Ev~~~~~~~~~~~i~f~~~~~~~~~l~vaTtrPeTl~~~~av~V~P~~~ry~~l~ 240 (861)
T TIGR00422 161 EKGLIYRGEYLVNWDPKLNTAISDIEVEYKEVKGKLYYIRYPLANGSKDYLVVATTRPETMFGDTAVAVHPEDERYKHLI 240 (861)
T ss_pred HCCCeeecCcccccCCCCCCcchHhHhhcccccceEEEEEEEecCCCCCEEEEEeCCcchhhhCeEEEECCCchHHHHhc
Confidence 99999999999999999999999999999999999999999998765 89999999999999999999999999999999
Q ss_pred cCeeecCCCCCCeeeEEecCCccccCCCCceeecCCCChhhHHHHHHhCCCceeecCCCCcccccccccCCCCHHHHHHH
Q 003578 297 GMMAIVPMTYGRHVPIISDKYVDKEFGTGVLKISPGHDHNDYLLARKLGLPILNVMNKDGTLNEVAGLFRGLDRFEARKK 376 (809)
Q Consensus 297 g~~~~~P~~~~~~vpi~~~~~V~~~~GTG~v~~~P~h~~~D~~~~~~~~l~~~~~~~~~G~~~~~~g~~~G~~~~~a~~~ 376 (809)
|+++.+|+ .++++|||+++||++++|||+||+||+||++||+++++||||+++++|++|+++++||.|+|+++++||++
T Consensus 241 g~~~~~P~-~~~~ipii~~~~V~~~~GTG~V~~~Pah~~~D~~~~~~~~l~~~~~id~~G~~~~~~~~~~G~~~~~ar~~ 319 (861)
T TIGR00422 241 GKKVILPL-TGRKIPIIADEYVDMEFGTGAVKVTPAHDFNDYEWGKRHNLEFINILDEDGLLNENAGKYQGLTRFEARKK 319 (861)
T ss_pred CCEEEcCC-CCCcceeeecCCCCcccCCCceEecCCCChHHHHHHHHcCCCccceeCCCCeEcCCCcccCCcCHHHhHHH
Confidence 99999999 58999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHCCCeeeeecccccCcccccCCCeeEEeeccceeeeccHHHHHHHHHHhcCCceEecchhHHHHHHHHhcCCce
Q 003578 377 LWSDLEETGLAVKKEPHTLRVPRSQRGGEVIEPLVSKQWFVTMEPLAEKALHAVEKGELTIMPERFEKIYNHWLSNIKDW 456 (809)
Q Consensus 377 i~~~L~~~g~~~~~~~~~~~~p~c~r~~~~i~~~~~~qwfl~~~~~~~~~~~~~~~~~~~~~P~~~~~~~~~~l~~l~Dw 456 (809)
|+++|+++|++.+.+++.|.+|+|+|||+++++++++||||+++++++++++++++++++|+|++.++++.+||++++||
T Consensus 320 i~~~L~~~g~l~~~~~~~~~~p~~~R~g~~ve~~~~~qWFi~~~~~~~~~~~~~~~~~i~~~P~~~~~~~~~wl~~l~DW 399 (861)
T TIGR00422 320 IVEDLKEEGLLVKIEPHTHNVGTCWRSGTVVEPLLSKQWFVKVEKLADKALEAAEEGEIKFVPKRMEKRYLNWLRNIKDW 399 (861)
T ss_pred HHHHHHhCCCeeeeeeeeccCCEeCCCCCEEEEEecCcceEecHHHHHHHHHHhhcCCeEEEChHHHHHHHHHHhccccc
Confidence 99999999999999999999999999999999999999999999999999999998899999999999999999999999
Q ss_pred eeeccccccceeeEEEEcCCcccEEEcCChhHHHHHHhhhcCCCccccccCCccceeecccCccceecCCCCCChhhhhh
Q 003578 457 CISRQLWWGHRIPVWYIVGKEEEYIVARNADEALEKAHQKYGKNVEIYQDPDVLDTWFSSALWPFSTLGWPDVSADDFKK 536 (809)
Q Consensus 457 ~ISRq~~WG~piP~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dvld~Wfds~~~~~~~~~~~~~~~~~~~~ 536 (809)
||||||+||||||+|+|.. ++.+.++.+..++...+ ++|.+..+.|++|||||||||++||++++|||.++ .+|++
T Consensus 400 ~ISRq~~WG~piP~w~~~~-~~~~~v~~~~~~~~~~~--~~~~~~~~~~~~dVlDtWFdS~l~~~s~~g~p~~~-~~~~~ 475 (861)
T TIGR00422 400 CISRQLIWGHRIPVWYCKE-CGEVYVAKEEPLPDDKT--NTGPSVELEQDTDVLDTWFSSSLWPFSTLGWPDET-KDLKK 475 (861)
T ss_pred eeeeecccCCcceEEEECC-CCcEEeccchHHhhhhh--ccCCcccEEECCCcccceeccchHHHHHhCCCCCh-HHHhh
Confidence 9999999999999999965 34455565555544432 35544578999999999999999999999999876 78999
Q ss_pred cCCCcEEEeeehhHHhHHHHHHHHHHHhcCCCCceeEEEeeeEEccCCCcccccccCccChhhHHHhhCCchHHHHHhhC
Q 003578 537 FYPTTMLETGHDILFFWVARMVMMGIEFTGSVPFSHVYLHGLIRDSQGRKMSKTLGNVIDPIDTIKEFGADALRFTISLG 616 (809)
Q Consensus 537 ~~p~d~~~~G~Di~~~w~~~~~~~~~~l~~~~Pf~~v~~hg~vld~~G~KMSKS~GN~I~p~dli~~ygaD~lR~~ll~~ 616 (809)
|||+|++++|+||++||+++|++++.+++++.||++|++||++++.+|+|||||+||+|+|.+++++||+|++||||++.
T Consensus 476 ~~P~d~~~~G~Dii~fw~~~~~~~~~~~~~~~Pfk~v~~hG~v~d~~G~KMSKS~GN~i~p~~~i~~ygaDalR~~l~~~ 555 (861)
T TIGR00422 476 FYPTDLLVTGYDIIFFWVARMIFRSLALTGQVPFKEVYIHGLVRDEQGRKMSKSLGNVIDPLDVIEKYGADALRFTLASL 555 (861)
T ss_pred cCCcceeecchhhhhHHHHHHHHHHHHhcCCCchheEEEeeEEECCCCCCCCcCCCCCCCHHHHHHHhChHHHHHHHHhC
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999998
Q ss_pred CC-CCcccccHHHHHHHHHHHHHHHHHHHHHHHhCCCCCchhhHHHHhhhccchhhhhcCCCchhHHHHHHHHHHHHHHH
Q 003578 617 TA-GQDLSLSIERLTANKAFTNKLWNAGKFILQNLPSQNDISRWEILLAYKFDEEECLCKAPLPECWVVSKLHMLIDTVT 695 (809)
Q Consensus 617 ~~-~~d~~fs~~~l~~~~~~~~kl~N~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~~d~~il~~l~~~~~~v~ 695 (809)
++ ++|++|+++.+.+.++++++|||+.+|+..+....... ......++..|+|++++++.+++.+.
T Consensus 556 ~~~~~d~~f~~~~~~~~~~~~nkl~N~~rf~~~~~~~~~~~-------------~~~~~~~~~~D~wil~~l~~~~~~v~ 622 (861)
T TIGR00422 556 VTPGDDINFDWKRVESARNFLNKLWNASRFVLMNLSDDLEL-------------SGGEEKLSLADRWILSKLNRTIKEVR 622 (861)
T ss_pred CCCCCCceecHHHHHHHHHHHHHHHHHHHHHHhcccccccc-------------ccccccCCHHHHHHHHHHHHHHHHHH
Confidence 88 99999999999999999999999999987665332110 00012345689999999999999999
Q ss_pred HHhhcCChHHHHHHHHHHHHHhhHHHHHHHhhhhhhcCCCcHHHHHHHHHHHHHHHHHHHHhccchhHHHHHHHHHhccC
Q 003578 696 ASYDKYFFGDVGRETYDFFWSDFADWYIEASKARLYRSEYDSDAIIAQAVLLYIFENILKLLHPFMPFVTEELWQSLRKR 775 (809)
Q Consensus 696 ~a~e~~~f~~a~~~i~~f~~~~~~n~Yi~~~k~~l~~~~~~~~~~~~~~~l~~vl~~l~~lL~P~~P~~aeeiw~~L~~~ 775 (809)
++|++|+|+.|++.+++|+++++||+|++.+|+|++.+ +...+.+++.+++.+++.+++||+|||||+||+||++|+..
T Consensus 623 ~~~e~~~f~~A~~~l~~f~~~~~~n~Yie~~k~~~~~~-~~~~~~~~~~~l~~~l~~~~~lL~Pf~P~itEelw~~L~~~ 701 (861)
T TIGR00422 623 KALDKYRFAEAAKALYEFIWNDFCDWYIELVKYRLYNG-NEAEKKAARDTLYYVLDKALRLLHPFMPFITEEIWQHFKEG 701 (861)
T ss_pred HHHHccCHHHHHHHHHHHHHHHHHHHHHHHhHHHHcCC-CcHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHhCccc
Confidence 99999999999999999988899999999999999865 33456788899999999999999999999999999999866
Q ss_pred CCceEecCCCCCCC-cCCHHHHHHHHHHHHHHhhC
Q 003578 776 KEALIVSPWPQTSL-PRHMSAIKRFENLQSLVILI 809 (809)
Q Consensus 776 ~~sv~~~~wP~~~~-~~d~~~~~~~~~~~~~~~~~ 809 (809)
++||+.++||..++ .+|++++..|+.+++++.++
T Consensus 702 ~~si~~~~~P~~~~~~~d~~~e~~~~~l~~ii~~i 736 (861)
T TIGR00422 702 ADSIMLQSYPVVDAEFVDEEAEKAFELLKEIIVSI 736 (861)
T ss_pred CCceeecCCCCcccccCCHHHHHHHHHHHHHHHHH
Confidence 67999999999986 78999999999999998763
No 8
>PRK14900 valS valyl-tRNA synthetase; Provisional
Probab=100.00 E-value=9.3e-164 Score=1491.20 Aligned_cols=733 Identities=47% Similarity=0.897 Sum_probs=672.6
Q ss_pred CCCCCCCCCCh-hhHHHHHHHHHhcCCCCCCC-CCCCCCEEEeCCCCCCCCCCcchhhHHHHHHHHHHHHHHHCCCcccc
Q 003578 55 NKDTLPKTFDF-TSEERIYNWWESQGYFKPNF-ERGSDPFVISMPPPNVTGSLHMGHAMFVTLEDIMVRYHRMKGRPTLW 132 (809)
Q Consensus 55 ~~~~~~~~~~~-~~E~~~~~~W~~~~~f~~~~-~~~~~~f~i~~~pPy~nG~lHiGH~~~~~~~Di~~Ry~rm~G~~V~~ 132 (809)
...++|+.|++ ++|++||++|++.++|++.. +.++++|+|++||||+||.|||||++|++++|+++||+||+||+|+|
T Consensus 11 ~~~~~~~~y~~~~iE~~~~~~W~~~~~f~~~~~~~~~~~f~i~~pPP~~nG~lHiGH~~~~~~~Di~~Ry~rm~G~~vl~ 90 (1052)
T PRK14900 11 NRTELAKGYEHREVEARWYPFWQERGYFHGDEHDRTRPPFSIVLPPPNVTGSLHLGHALTATLQDVLIRWKRMSGFNTLW 90 (1052)
T ss_pred cccccCCCCCHHHHHHHHHHHHHHCCCccCCcccCCCCCEEEecCCCCCCCcchHHHHHhhHHHHHHHHHHHhcCCcccC
Confidence 55678999999 89999999999999999863 34578899999999999999999999999999999999999999999
Q ss_pred cCCCCCCCCchHHHHHHHHH-HcCCCccccCHHHHHHHHHHHHHHHHHHHHHHHHHhcccccCCCccccCChhhHHHHHH
Q 003578 133 LPGTDHAGIATQLVVEKMLA-AEGIKRVELSRDEFTKRVWEWKEKYGGTITSQIKRLGASCDWTRERFTLDEQLSRAVVE 211 (809)
Q Consensus 133 ~~G~D~~Gl~~~~~~e~~~~-~~g~~~~~~~~~~f~~~~~~~~~~~~~~~~~~l~~lgi~~Dw~~~~~T~d~~~~~~v~~ 211 (809)
++||||||||+|.++|+.+. +.|+++.++++++|++.||+|++++++.|++||++||+++||+|+|+|+||+|.++|++
T Consensus 91 ~~G~D~~Glp~e~~ve~~l~~~~~~~~~~~~~e~f~~~~~~~~~~~~~~~~~~~~~lG~s~Dw~~~~~T~d~~~~~~v~~ 170 (1052)
T PRK14900 91 LPGTDHAGIATQMIVEKELKKTEKKSRHDLGREAFLERVWAWKEQYGSRIGEQHKALGASLDWQRERFTMDEGLSRAVRE 170 (1052)
T ss_pred CCCCCccchHHHHHHHHHhhhccCCChhhCCHHHHHHHHHHHHHHHHHHHHHHHHHhchheecCCCcCcCCHHHHHHHHH
Confidence 99999999999999998774 46889999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHcCceeecCcccccCCCCCcccCcccccccc-CCCceEEEEEEecCCCeeEEEEecCCccccCCcEEEECCCCc
Q 003578 212 AFIRLHEKGLIYQGSYMVNWSPNLQTAVSDLEVEYSE-EPGTLYYIKYRVAGRSDFLTIATTRPETLFGDVALAVNPQDE 290 (809)
Q Consensus 212 ~f~~L~~~Gliy~~~~~v~w~p~~~t~lsd~Ev~~~~-~~~~~~~~~f~~~~~~~~l~v~Tt~petl~~~~av~v~p~~~ 290 (809)
+|.+|+++||||++.++|+|||.|+|+|||+||+|.+ ..+.++||+|++.+++.+|+|||||||||+||+||||||+|+
T Consensus 171 ~F~~L~~~Gliyr~~~~v~wcp~~~T~Lsd~Ev~~~e~~~~~~~~i~f~l~~~~~~l~vaTTrPeTl~~~~avaV~P~~~ 250 (1052)
T PRK14900 171 VFVRLHEEGLIYREKKLINWCPDCRTALSDLEVEHEEAHQGELWSFAYPLADGSGEIVVATTRPETMLGDTAVAVHPLDP 250 (1052)
T ss_pred HHHHHHHCCCEEeccceeccCCCCCCCccHHHhcccCCCCCeEEEEEEEecCCCcEEEEEECchhhhhcceeEEECCCcH
Confidence 9999999999999999999999999999999999998 788899999999887789999999999999999999999999
Q ss_pred hhhhcccCeeecCCCCCCeeeEEecC-CccccCCCCceeecCCCChhhHHHHHHhCCCceeecCCCCcccccccccCCCC
Q 003578 291 HYSQFIGMMAIVPMTYGRHVPIISDK-YVDKEFGTGVLKISPGHDHNDYLLARKLGLPILNVMNKDGTLNEVAGLFRGLD 369 (809)
Q Consensus 291 ~y~~l~g~~~~~P~~~~~~vpi~~~~-~V~~~~GTG~v~~~P~h~~~D~~~~~~~~l~~~~~~~~~G~~~~~~g~~~G~~ 369 (809)
+|++|+|++|.||+ .++.+|||++. ||++++|||+||+||+||++||+++++||||+++++|++|++++++|.|+|++
T Consensus 251 ~y~~L~G~~~~~Pl-~~~~ipIi~d~~~vd~~~GTG~V~~~Pahd~~D~~~~~~~~L~~~~~id~~G~~~~~~~~~~Gl~ 329 (1052)
T PRK14900 251 RYMALHGKKVRHPI-TGRTFPIVADAILVDPKFGTGAVKVTPAHDFNDFEVGKRHGLEMITVIGPDGRMTAEAGPLAGLD 329 (1052)
T ss_pred HHHHhcCCEEECCC-CCCeeEEEecccccCcCCCCCeEEecCCCChhHHHHHHHcCCCccceECCCcEEecCCcccCCcC
Confidence 99999999999999 68999999764 89999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHCCCeeeeecccccCcccccCCCeeEEeeccceeeeccHHHHHHHHHHhcCCceEecchhHHHHHHH
Q 003578 370 RFEARKKLWSDLEETGLAVKKEPHTLRVPRSQRGGEVIEPLVSKQWFVTMEPLAEKALHAVEKGELTIMPERFEKIYNHW 449 (809)
Q Consensus 370 ~~~a~~~i~~~L~~~g~~~~~~~~~~~~p~c~r~~~~i~~~~~~qwfl~~~~~~~~~~~~~~~~~~~~~P~~~~~~~~~~ 449 (809)
+++||++|+++|+++|++++.+++.|++|+|||||++|++++++||||+++++++++++++++++++|+|+..++++.+|
T Consensus 330 ~~ear~~Ii~~L~~~g~l~~~~~~~h~~~~c~R~~~~ie~~~s~qWFi~l~~~k~~~~~~v~~~~~~~~P~~~~~~~~~w 409 (1052)
T PRK14900 330 RFEARKEVKRLLAEQGLDRGAKPHVLPLGRCQRSATILEPLLSDQWYVRIEPLARPAIEAVEQGRTRFIPEQWTNTYMAW 409 (1052)
T ss_pred HHHHHHHHHHHHHhCCCeecceeeeccCceeCCCCceEEEEeccceeeehHHHHHHHHHHHhcCCcEEEChHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999889999999999999999
Q ss_pred HhcCCceeeeccccccceeeEEEEcCCcccEEEcCChhHHHHHHhhhcCCCccccccCCccceeecccCccceecCCCCC
Q 003578 450 LSNIKDWCISRQLWWGHRIPVWYIVGKEEEYIVARNADEALEKAHQKYGKNVEIYQDPDVLDTWFSSALWPFSTLGWPDV 529 (809)
Q Consensus 450 l~~l~Dw~ISRq~~WG~piP~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dvld~Wfds~~~~~~~~~~~~~ 529 (809)
|++|+||||||||+||+|||+|||++ +.++++.... ..+.+|+ +..+.+++|||||||||++||++++|||.+
T Consensus 410 l~~l~DW~ISRqr~WG~PIP~w~~~~--~~~~v~~~~~----~~~~~~~-~~~~~~~~dVlDvWFdS~l~y~s~~g~p~~ 482 (1052)
T PRK14900 410 MRNIHDWCISRQLWWGHQIPAWYCPD--GHVTVARETP----EACSTCG-KAELRQDEDVLDTWFSSGLWPFSTMGWPEQ 482 (1052)
T ss_pred HhcCccceEEeecCCCceeCeEEcCC--CcEEeccccc----ccccccC-ccceecCCceEEEEEcCChHHHHHHcCCCc
Confidence 99999999999999999999999953 3455554321 1112333 235889999999999999999999999987
Q ss_pred ChhhhhhcCCCcEEEeeehhHHhHHHHHHHHHHHhcCCCCceeEEEeeeEEccCCCcccccccCccChhhHHHhhCCchH
Q 003578 530 SADDFKKFYPTTMLETGHDILFFWVARMVMMGIEFTGSVPFSHVYLHGLIRDSQGRKMSKTLGNVIDPIDTIKEFGADAL 609 (809)
Q Consensus 530 ~~~~~~~~~p~d~~~~G~Di~~~w~~~~~~~~~~l~~~~Pf~~v~~hg~vld~~G~KMSKS~GN~I~p~dli~~ygaD~l 609 (809)
. .+|++|||+|++++|+||++||+++|+++++.+++.+||++|++|||++|.+|+|||||+||+|+|.+++++||+|++
T Consensus 483 ~-~~~~~~~P~d~~~~G~Dii~~W~a~~l~~~~~~~~~~Pfk~V~~hG~v~d~~G~KMSKSkGNvIdP~dvIe~yGaDal 561 (1052)
T PRK14900 483 T-DTLRTFYPTSVMETGHDIIFFWVARMMMMGLHFMGEVPFRTVYLHPMVRDEKGQKMSKTKGNVIDPLVITEQYGADAL 561 (1052)
T ss_pred h-HHHHhhCCchhhcccccHHhHHHHHHHHHHHHhcCCCccceeEecccEECCCCCCccCCCCCCCCHHHHHHHhCcHHH
Confidence 5 679999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHhhCCC-CCcccccHHHHHHHHHHHHHHHHHHHHHHHhCCCCCchhhHHHHhhhccchhhhhcCCCchhHHHHHHHH
Q 003578 610 RFTISLGTA-GQDLSLSIERLTANKAFTNKLWNAGKFILQNLPSQNDISRWEILLAYKFDEEECLCKAPLPECWVVSKLH 688 (809)
Q Consensus 610 R~~ll~~~~-~~d~~fs~~~l~~~~~~~~kl~N~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~~d~~il~~l~ 688 (809)
||||++..+ ++|++||++.++..++|+++|||+.+++..++.++.... .......++..|+|++++++
T Consensus 562 R~~L~~~~~~g~D~~fs~~~l~~~~~f~nkl~N~~R~~~~~~~~~~~~~-----------~~~~~~~~~~~D~wils~l~ 630 (1052)
T PRK14900 562 RFTLAALTAQGRDIKLAKERIEGYRAFANKLWNASRFALMNLSGYQERG-----------EDPARLARTPADRWILARLQ 630 (1052)
T ss_pred HHHHHhcCCCCCCCcccHHHHHHHHHHHHHHHHHHHHHHHhhhccCccc-----------ccccccccCHHHHHHHHHHH
Confidence 999998776 999999999998889999999999888876654332100 00001234567999999999
Q ss_pred HHHHHHHHHhhcCChHHHHHHHHHHHHHhhHHHHHHHhhhhhhcCCCcHHHHHHHHHHHHHHHHHHHHhccchhHHHHHH
Q 003578 689 MLIDTVTASYDKYFFGDVGRETYDFFWSDFADWYIEASKARLYRSEYDSDAIIAQAVLLYIFENILKLLHPFMPFVTEEL 768 (809)
Q Consensus 689 ~~~~~v~~a~e~~~f~~a~~~i~~f~~~~~~n~Yi~~~k~~l~~~~~~~~~~~~~~~l~~vl~~l~~lL~P~~P~~aeei 768 (809)
.+++++.++|++|+|+.|++.+++|+++++||+||+..|++++.+ +...+..++.+++.+++.+++||+|||||+||+|
T Consensus 631 ~~i~~v~~~~e~y~f~~A~~~i~~f~~~~~~n~Yie~~k~~l~~~-~~~~~~~~~~~L~~~L~~l~~LLaPfmP~~aEei 709 (1052)
T PRK14900 631 RAVNETVEALEAFRFNDAANAVYAFVWHELCDWYIELAKEALASE-DPEARRSVQAVLVHCLQTSYRLLHPFMPFITEEL 709 (1052)
T ss_pred HHHHHHHHHHHhcCHHHHHHHHHHHHHHhhhHHHHHhccHhhccC-CHHHHHHHHHHHHHHHHHHHHHHHhHhHHHHHHH
Confidence 999999999999999999999999998899999999999998775 3334566788999999999999999999999999
Q ss_pred HHHhccC------CCceEecCCCCCCCcCCHHHHHHHHHHHHHHhhC
Q 003578 769 WQSLRKR------KEALIVSPWPQTSLPRHMSAIKRFENLQSLVILI 809 (809)
Q Consensus 769 w~~L~~~------~~sv~~~~wP~~~~~~d~~~~~~~~~~~~~~~~~ 809 (809)
|++|+.. .+||+.++||..+. +|++++..|+.+++++++|
T Consensus 710 w~~L~~~~~~~~~~~SV~~~~wP~~~~-~d~~~e~~~~~v~~ii~~i 755 (1052)
T PRK14900 710 WHVLRAQVGASAWADSVLAAEYPRKGE-ADEAAEAAFRPVLGIIDAV 755 (1052)
T ss_pred HHHhccccccCCCCCceeecCCCCCCc-ccHHHHHHHHHHHHHHHHH
Confidence 9999742 26899999999887 7889999999999998764
No 9
>PRK06039 ileS isoleucyl-tRNA synthetase; Reviewed
Probab=100.00 E-value=5.5e-162 Score=1475.55 Aligned_cols=738 Identities=29% Similarity=0.524 Sum_probs=672.5
Q ss_pred CCCCCCCCh-hhHHHHHHHHHhcCCCCCCCC--CCCCCEEEeCCCCCCCCCCcchhhHHHHHHHHHHHHHHHCCCccccc
Q 003578 57 DTLPKTFDF-TSEERIYNWWESQGYFKPNFE--RGSDPFVISMPPPNVTGSLHMGHAMFVTLEDIMVRYHRMKGRPTLWL 133 (809)
Q Consensus 57 ~~~~~~~~~-~~E~~~~~~W~~~~~f~~~~~--~~~~~f~i~~~pPy~nG~lHiGH~~~~~~~Di~~Ry~rm~G~~V~~~ 133 (809)
..+++.|++ ++|++||++|+++++|++..+ .++++|+|++|||||||.|||||+++++++|+++||+||+||+|+++
T Consensus 5 ~~~~~~~~~~~iE~~~~~~W~~~~~f~~~~~~~~~~~~f~i~~~PPy~nG~lH~GH~l~~t~kD~i~Ry~rm~G~~v~~~ 84 (975)
T PRK06039 5 PEVDSQPDFPALEEEVLKFWKENDIFEKSIENREGGPEFVFYDGPPTANGLPHYGHLLTRTIKDVVPRYKTMKGYKVERR 84 (975)
T ss_pred cccCCCCCHHHHHHHHHHHHHHCCCcccCccccCCCCCEEEeCCCCCCCCCccHhhhHhhHHHHHHHHHHHhCCCcccCc
Confidence 457889999 899999999999999998654 45788999999999999999999999999999999999999999999
Q ss_pred CCCCCCCCchHHHHHHHHHHcCC-CccccCHHHHHHHHHHHHHHHHHHHHHHHHHhcccccCCCccccCChhhHHHHHHH
Q 003578 134 PGTDHAGIATQLVVEKMLAAEGI-KRVELSRDEFTKRVWEWKEKYGGTITSQIKRLGASCDWTRERFTLDEQLSRAVVEA 212 (809)
Q Consensus 134 ~G~D~~Gl~~~~~~e~~~~~~g~-~~~~~~~~~f~~~~~~~~~~~~~~~~~~l~~lgi~~Dw~~~~~T~d~~~~~~v~~~ 212 (809)
+||||||||||.+||+.+...++ ..+++++++|+++|++|+.++++.|++|+++||+++||+|+|+|+||.|+++|+|+
T Consensus 85 ~GwD~~GlPie~~vek~l~~~~~~~i~~~g~~~f~~~c~~~~~~~~~~~~~~~~rlG~~~Dw~~~y~T~d~~y~~~v~~~ 164 (975)
T PRK06039 85 AGWDTHGLPVELEVEKELGISGKKDIEEYGIEKFNEKCRESVLRYTDEWEEYTERLGRWVDFDNPYKTLDNEYMESVWWA 164 (975)
T ss_pred CCcCCCccHHHHHHHHHhCcccccchhhcCHHHHHHHHHHHHHHHHHHHHHHHHHhCceeecCCCcCcCCHHHHHHHHHH
Confidence 99999999999999987643322 45679999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHcCceeecCcccccCCCCCcccCccccc--cccCCCceEEEEEEecC-CCeeEEEEecCCccccCCcEEEECCCC
Q 003578 213 FIRLHEKGLIYQGSYMVNWSPNLQTAVSDLEVE--YSEEPGTLYYIKYRVAG-RSDFLTIATTRPETLFGDVALAVNPQD 289 (809)
Q Consensus 213 f~~L~~~Gliy~~~~~v~w~p~~~t~lsd~Ev~--~~~~~~~~~~~~f~~~~-~~~~l~v~Tt~petl~~~~av~v~p~~ 289 (809)
|.+|+++||||++.++|+|||.|+|+|||+||+ |++..++++||+|++.+ ++.+++|||||||||+||+||||||++
T Consensus 165 F~~l~~kGliyr~~~~v~wcp~~~T~Ls~~Ev~~~y~~~~~~~~~v~f~l~~~~~~~l~i~TTrP~Tl~~n~avaV~P~~ 244 (975)
T PRK06039 165 LKQLYDKGLLYKGYRVVPYCPRCETPLSNHEVAQGYKDVKDPSVYVKFKLKGEENEYLLAWTTTPWTLPSNLALAVHPDI 244 (975)
T ss_pred HHHHHHCCCEEecceeeeecCCCCCCccHHHHhhcccccCCceEEEEEEecCCCCCEEEEEECCccccccceEEEECCCC
Confidence 999999999999999999999999999999999 99999999999999974 568999999999999999999999998
Q ss_pred ---------chh-----------------------hhcccCeeecCCCC--C--CeeeEEecCCccccCCCCceeecCCC
Q 003578 290 ---------EHY-----------------------SQFIGMMAIVPMTY--G--RHVPIISDKYVDKEFGTGVLKISPGH 333 (809)
Q Consensus 290 ---------~~y-----------------------~~l~g~~~~~P~~~--~--~~vpi~~~~~V~~~~GTG~v~~~P~h 333 (809)
++| ++|+|+++.+|+.. + +.+||++++||++++|||+||+||||
T Consensus 245 ~Y~~~~~~~~~yi~a~~~~~~~~~~~~~~~~~~~G~~L~G~~~~~P~~~~~~~~~~~pii~~~~V~~~~GTG~V~~aPah 324 (975)
T PRK06039 245 DYVKVEGGGEVYILAEALLEKVLKEDYEVVETFKGSELEGLEYEPPFPYFADEKNAFRVVLADFVTTEDGTGIVHIAPAF 324 (975)
T ss_pred ceEEEecCCeEEEEhHHHHHHHhhcccEEEeeecCccccCCEEECCcccccCCcceeEEEecCccCCCCCccceeeCCCC
Confidence 566 67999999999953 3 47999999999999999999999999
Q ss_pred ChhhHHHHHHhCCCceeecCCCCcccccccccCCCCHHHHHHHHHHHHHHCCCeeeeecccccCcccccCCCeeEEeecc
Q 003578 334 DHNDYLLARKLGLPILNVMNKDGTLNEVAGLFRGLDRFEARKKLWSDLEETGLAVKKEPHTLRVPRSQRGGEVIEPLVSK 413 (809)
Q Consensus 334 ~~~D~~~~~~~~l~~~~~~~~~G~~~~~~g~~~G~~~~~a~~~i~~~L~~~g~~~~~~~~~~~~p~c~r~~~~i~~~~~~ 413 (809)
|++||+++++||||+++++|++|+|++.+|.|+|+.++|||++|+++|+++|++++.+++.|++|+|||||+|+++++++
T Consensus 325 g~~D~~~~~~~~l~~~~~id~~G~~~~~~~~~~G~~v~eA~~~Ii~~L~~~g~l~~~~~~~h~~p~c~R~g~pv~~~~~~ 404 (975)
T PRK06039 325 GEDDFEVGKKYGLPVVCPVDDDGRFTEEVPDYAGKFVKDADKEIIRDLKERGLLFKAETYEHSYPHCWRCDTPLIYYATE 404 (975)
T ss_pred ChHHHHHHHHcCCCccceeCCCceEcCCCccccCCCHHHhhHHHHHHHHhCCCEeeeeeecCCCCEeCCCCCEEEEEecC
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ceeeeccHHHHHHHHHHhcCCceEecchhHH-HHHHHHhcCCceeeeccccccceeeEEEEcCCcccEEEcCChhHHHHH
Q 003578 414 QWFVTMEPLAEKALHAVEKGELTIMPERFEK-IYNHWLSNIKDWCISRQLWWGHRIPVWYIVGKEEEYIVARNADEALEK 492 (809)
Q Consensus 414 qwfl~~~~~~~~~~~~~~~~~~~~~P~~~~~-~~~~~l~~l~Dw~ISRq~~WG~piP~~~~~~~~~~~~~~~~~~~~~~~ 492 (809)
||||++++++++++++++ +++|+|+..++ ++.+||++++||||||||+||+|||+|+|+. ++.+.+..+..++...
T Consensus 405 qWFi~~~~~k~~ll~~~~--~i~~~P~~~~~~~~~~wl~~l~DW~ISRqr~WG~PIPiw~~~~-~g~~~v~~~~~el~~~ 481 (975)
T PRK06039 405 SWFIRVTKIKDRMLELNQ--KINWYPEHIKDGRFGKWLENARDWNISRNRYWGTPLPIWRCED-CGRIDVIGSIEELEEL 481 (975)
T ss_pred eeeEecHHHHHHHHHhhC--CeEEECcccchhhHHHHHhcCccceeeeccccCCcceEEEecC-CCeEEEeccHHHHHHH
Confidence 999999999999999986 58999999999 9999999999999999999999999999975 3567777777776544
Q ss_pred Hhh-----------------hcCCCccccccCCccceeecccCccceecCCCCCChhhhhhcCCCcEEEeeehhHHhHHH
Q 003578 493 AHQ-----------------KYGKNVEIYQDPDVLDTWFSSALWPFSTLGWPDVSADDFKKFYPTTMLETGHDILFFWVA 555 (809)
Q Consensus 493 ~~~-----------------~~~~~~~~~~~~dvld~Wfds~~~~~~~~~~~~~~~~~~~~~~p~d~~~~G~Di~~~w~~ 555 (809)
... .|+++..++|++|||||||||++||++.++||.++++.|++|||+|++++|+||+|||++
T Consensus 482 ~g~~~~~~~l~~~~~d~~~~~~~~~~~~~r~~dVlDvWFdSg~~p~a~~~~p~~~~~~f~~~~Pad~~~~G~Di~r~Wf~ 561 (975)
T PRK06039 482 FGEDVEPIDLHRPYVDEVTLPCPDGGTMRRVPDVIDVWFDSGSMPYAQLHYPFENKEWFEKHFPADFIVEGIDQTRGWFY 561 (975)
T ss_pred hCCCcchhhhcccccccccccCCCCcceEeccccccceeecCCccHHHhCCcccChhhhhccCCceEEEechhhHhhHHH
Confidence 321 223345689999999999999999999999998765779999999999999999999999
Q ss_pred HHHHHHHHhcCCCCceeEEEeeeEEccCCCcccccccCccChhhHHHhhCCchHHHHHhhCCC-CCcccccHHH-HHHHH
Q 003578 556 RMVMMGIEFTGSVPFSHVYLHGLIRDSQGRKMSKTLGNVIDPIDTIKEFGADALRFTISLGTA-GQDLSLSIER-LTANK 633 (809)
Q Consensus 556 ~~~~~~~~l~~~~Pf~~v~~hg~vld~~G~KMSKS~GN~I~p~dli~~ygaD~lR~~ll~~~~-~~d~~fs~~~-l~~~~ 633 (809)
+|++++..+++..||+++++||++++.+|+|||||+||+|+|.+++++||+|++||||++.++ ++|++||++. +...+
T Consensus 562 ~l~~~~~~~~~~~pfk~v~~hG~Vld~~G~KMSKSlGNvIdP~dli~~yGaDalR~~lls~~~~~~D~~fs~~~~~~~~~ 641 (975)
T PRK06039 562 TLLALSTALFDRPPYKNVLVHGHVLDEDGQKMSKSLGNYVDPFEVFDKYGADALRWYLLSSSAPWEDLRFSEDGVREVVR 641 (975)
T ss_pred HHHHHHHHhcCCCcccEEEEeeeEECCCCCCcCCCCCCcCCHHHHHHHhChHHHHHHHHhCCCCCCCceechhHHHHHHH
Confidence 999999999999999999999999999999999999999999999999999999999999988 9999999999 66688
Q ss_pred HHHHHHHHHHHHHHH--hCCCCCchhhHHHHhhhccchhhhhcCCCchhHHHHHHHHHHHHHHHHHhhcCChHHHHHHHH
Q 003578 634 AFTNKLWNAGKFILQ--NLPSQNDISRWEILLAYKFDEEECLCKAPLPECWVVSKLHMLIDTVTASYDKYFFGDVGRETY 711 (809)
Q Consensus 634 ~~~~kl~N~~~~~~~--~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~~d~~il~~l~~~~~~v~~a~e~~~f~~a~~~i~ 711 (809)
+++++|||+++|+.. ++.++... . .......++..|+|++++++.+++.+.++|++|+|+.|++.++
T Consensus 642 ~~l~kl~N~~~f~~~y~~~~~~~~~-~----------~~~~~~~~~~~D~wils~l~~li~~v~~a~e~y~~~~A~~~l~ 710 (975)
T PRK06039 642 KFLLTLWNVYSFFVLYANLDGFDYP-P----------AEDEVDSLNELDRWILSRLNSLVKEVTEALDNYDITKAARAIR 710 (975)
T ss_pred HHHHHHHHHHHHHHHHhhhccCCcc-c----------cccccccCCHHHHHHHHHHHHHHHHHHHHHHccCHHHHHHHHH
Confidence 999999999998763 22221110 0 0011124567899999999999999999999999999999999
Q ss_pred HHHHHhhHHHHHHHhhhhhhcCCCcHHHHHHHHHHHHHHHHHHHHhccchhHHHHHHHHHhcc--CCCceEecCCCCCCC
Q 003578 712 DFFWSDFADWYIEASKARLYRSEYDSDAIIAQAVLLYIFENILKLLHPFMPFVTEELWQSLRK--RKEALIVSPWPQTSL 789 (809)
Q Consensus 712 ~f~~~~~~n~Yi~~~k~~l~~~~~~~~~~~~~~~l~~vl~~l~~lL~P~~P~~aeeiw~~L~~--~~~sv~~~~wP~~~~ 789 (809)
+|+ +++||||++.+|++++...+...+.+++.+|+.+++.+++||+|||||+||+||++|+. ..+||+.++||++++
T Consensus 711 ~f~-~~lsn~Yi~~~k~r~w~~~~~~~~~~a~~~L~~~L~~l~~lLaPf~Pf~aEei~~~L~~~~~~~sv~~~~~P~~~~ 789 (975)
T PRK06039 711 DFV-DDLSNWYIRRSRRRFWKEEDDPDKLAAYATLYTVLETLSRLAAPFTPFIAEEIYQNLTREDAPESVHLADWPEVDE 789 (975)
T ss_pred HHH-HHHHHHHHHHhhhhhccCCCcHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHhccccCCCCeeEecCCCCCcc
Confidence 999 89999999999999887644445677889999999999999999999999999999985 457999999999995
Q ss_pred -cCCHHHHHHHHHHHHHHhhC
Q 003578 790 -PRHMSAIKRFENLQSLVILI 809 (809)
Q Consensus 790 -~~d~~~~~~~~~~~~~~~~~ 809 (809)
..|+++++.|+.+++++.++
T Consensus 790 ~~~d~~le~~~~~~~~ii~~~ 810 (975)
T PRK06039 790 SLIDEELEEAMDLVREIVSLG 810 (975)
T ss_pred ccCCHHHHHHHHHHHHHHHHH
Confidence 78999999999999998763
No 10
>COG0060 IleS Isoleucyl-tRNA synthetase [Translation, ribosomal structure and biogenesis]
Probab=100.00 E-value=4.7e-162 Score=1408.37 Aligned_cols=733 Identities=32% Similarity=0.554 Sum_probs=664.7
Q ss_pred cCCCCCCCC-----CCCh-hhHHHHHHHHHhcCCCCCCCC---CCCCCEEEeCCCCCCCCCCcchhhHHHHHHHHHHHHH
Q 003578 53 ENNKDTLPK-----TFDF-TSEERIYNWWESQGYFKPNFE---RGSDPFVISMPPPNVTGSLHMGHAMFVTLEDIMVRYH 123 (809)
Q Consensus 53 ~~~~~~~~~-----~~~~-~~E~~~~~~W~~~~~f~~~~~---~~~~~f~i~~~pPy~nG~lHiGH~~~~~~~Di~~Ry~ 123 (809)
++++.+||+ ++++ ++|++++++|+++++|++..+ ++++.|++++||||+||.+|||||+|.+++||+.||+
T Consensus 3 ~k~tl~lp~T~fpmr~~l~~~E~~i~~~W~e~~iy~k~~~~~~~g~~~FvfhDGPPyANG~iHiGHalnKilKDiI~Ry~ 82 (933)
T COG0060 3 YKDTLNLPKTDFPMRANLPKKEPKILKFWEENDIYEKIREERNKGKPKFVLHDGPPYANGNIHIGHALNKILKDIIVRYK 82 (933)
T ss_pred ccccccCccCCCCccCChhhcCHHHHHHHHHhhHHHHHHHHHhCCCCcEEEeCCCCCCCCCcchhhhHHHhhhhhhhhhh
Confidence 344455554 5666 789999999999999998773 4689999999999999999999999999999999999
Q ss_pred HHCCCcccccCCCCCCCCchHHHHHHHHHHcCCCccccCHHHHHHHHHHHHHHHHHHHHHHHHHhcccccCCCccccCCh
Q 003578 124 RMKGRPTLWLPGTDHAGIATQLVVEKMLAAEGIKRVELSRDEFTKRVWEWKEKYGGTITSQIKRLGASCDWTRERFTLDE 203 (809)
Q Consensus 124 rm~G~~V~~~~G~D~~Gl~~~~~~e~~~~~~g~~~~~~~~~~f~~~~~~~~~~~~~~~~~~l~~lgi~~Dw~~~~~T~d~ 203 (809)
.|+||+|.+++||||||||||.+||+.+...+....+++.++|++.|++++.++++.++++++|||++.||+++|.|+|+
T Consensus 83 ~m~G~~v~~~pGWDcHGLPIE~~vek~lg~~k~~i~~~~~~efr~~Cr~~a~~~v~~q~~~f~RLGv~~Dw~npY~Tmd~ 162 (933)
T COG0060 83 TMQGYDVPYVPGWDCHGLPIELKVEKKLGIGKKDIESFGVEEFREKCREFALEQVDEQKEQFKRLGVWGDWENPYKTMDP 162 (933)
T ss_pred cccCCcCCCCCCCcCCCchHHHHHHHHhCCCcchhhhcCHHHHHHHHHHHHHHHHHHHHHHHHhheEeeccCCCeecCCH
Confidence 99999999999999999999999999886644566789999999999999999999999999999999999999999999
Q ss_pred hhHHHHHHHHHHHHHcCceeecCcccccCCCCCcccCccccccccCCCceEEEEEEecC----CCeeEEEEecCCccccC
Q 003578 204 QLSRAVVEAFIRLHEKGLIYQGSYMVNWSPNLQTAVSDLEVEYSEEPGTLYYIKYRVAG----RSDFLTIATTRPETLFG 279 (809)
Q Consensus 204 ~~~~~v~~~f~~L~~~Gliy~~~~~v~w~p~~~t~lsd~Ev~~~~~~~~~~~~~f~~~~----~~~~l~v~Tt~petl~~ 279 (809)
+|.+.++++|.+|++|||||++.++|+|||.|+|+||++||+|.+..++++|++|++.+ .+.+++||||||||||+
T Consensus 163 ~ye~~~~~~f~~~~~kGllyrg~Kpv~wsp~c~TaLAeaEvey~d~~dpSIyV~F~v~~~~~~~~~~lviWTTTPWTLPa 242 (933)
T COG0060 163 SYEESVWWAFKELYEKGLLYRGYKPVPWSPRCETALAEAEVEYGDVKDPSIYVKFPVKDEGLDENAYLVIWTTTPWTLPA 242 (933)
T ss_pred HHHHHHHHHHHHHHHCCCeecCCeeeeecCCCCcchhhhhhcccccCCceEEEEEEeccCCCCCCcEEEEEeCCCCCchh
Confidence 99999999999999999999999999999999999999999999999999999999975 46999999999999999
Q ss_pred CcEEEECCCCch---------h---------------------------hhcccCeeecCCCC---CCeeeEEecCCccc
Q 003578 280 DVALAVNPQDEH---------Y---------------------------SQFIGMMAIVPMTY---GRHVPIISDKYVDK 320 (809)
Q Consensus 280 ~~av~v~p~~~~---------y---------------------------~~l~g~~~~~P~~~---~~~vpi~~~~~V~~ 320 (809)
|.||||||+.++ | ++|.|..+.|||.+ .+..||+.++||+.
T Consensus 243 N~aiav~pd~~Y~lv~~~~~~~IlA~~lve~~~~~~~~~~~~vl~~~kG~~Leg~~y~hPf~~~~~~~~~~v~~gd~VT~ 322 (933)
T COG0060 243 NLAIAVHPDLDYVLVEVNGEKLILAKALVESVAKKAGVEDYEVLETFKGSELEGLRYEHPFYDFVYDRAFPVILGDHVTL 322 (933)
T ss_pred cceeEeCCCcceEEEEECCEEEEEhHHHHHHHHHHcCCcceEEeEEeehhhhCCCEeeCCcccccccceeeEEecCeEec
Confidence 999999999753 1 36889999999965 69999999999999
Q ss_pred cCCCCceeecCCCChhhHHHHHHhC-CCceeecCCCCcccccccccCCCCHHHHHHHHHHHHHHCCCeeeeecccccCcc
Q 003578 321 EFGTGVLKISPGHDHNDYLLARKLG-LPILNVMNKDGTLNEVAGLFRGLDRFEARKKLWSDLEETGLAVKKEPHTLRVPR 399 (809)
Q Consensus 321 ~~GTG~v~~~P~h~~~D~~~~~~~~-l~~~~~~~~~G~~~~~~g~~~G~~~~~a~~~i~~~L~~~g~~~~~~~~~~~~p~ 399 (809)
+.|||+||++||||++||.+|+++| ||+++++|++|++++..+.|.|+.++||++.|++.|+++|.+++.+.+.|+|||
T Consensus 323 d~GTG~VHtAPghGeeDy~vg~~~g~l~v~~pVD~~G~yt~~~~~~~G~~v~dAn~~Ii~~Lk~~g~Ll~~e~i~HsYPh 402 (933)
T COG0060 323 DDGTGLVHTAPGHGEEDYEVGKKYGLLEVLNPVDDNGRYTEEAPKYEGLFVKDANKKIIEDLKEKGNLLKSEKIEHSYPH 402 (933)
T ss_pred CCCccceecCCCCCHHHHHHHHHcCCcCCccccCCCccccccchhhCCceeccCCHHHHHHHHhCCceeeeeeEEeCCCc
Confidence 9999999999999999999999999 799999999999999999999999999999999999999999999999999999
Q ss_pred cccCCCeeEEeeccceeeeccHHHHHHHHHHhcCCceEecchhHHHHHHHHhcCCceeeeccccccceeeEEEEcCCccc
Q 003578 400 SQRGGEVIEPLVSKQWFVTMEPLAEKALHAVEKGELTIMPERFEKIYNHWLSNIKDWCISRQLWWGHRIPVWYIVGKEEE 479 (809)
Q Consensus 400 c~r~~~~i~~~~~~qwfl~~~~~~~~~~~~~~~~~~~~~P~~~~~~~~~~l~~l~Dw~ISRq~~WG~piP~~~~~~~~~~ 479 (809)
||||++|+++|.++|||++|+++++++++.++ +++|+|++.++++.+||++.+||||||||+||+|||+|+|+.+ +.
T Consensus 403 cWR~ktPlIyRAt~QWFi~v~~~r~~~l~~i~--~v~w~P~~~~~R~~~mve~r~DW~ISRQR~WGvPiPi~~~~~~-g~ 479 (933)
T COG0060 403 CWRTKTPLIYRATPQWFVSVDKLRDKMLKEIN--KVNWVPDWGKNRFGNMVENRPDWCISRQRYWGVPIPVWYCKET-GE 479 (933)
T ss_pred ccCCCCeeEEeecchheeEHHHHHHHHHHHHh--cceEEChhHHHHHHHHHcCCCcceeeccccCCCceeEEEECCC-CC
Confidence 99999999999999999999999999999887 7999999999999999999999999999999999999999762 33
Q ss_pred EEEcCChhHHHHHHh-----------------h---hc-CCCccccccCCccceeecccCccceecCCCCCChhhhhhcC
Q 003578 480 YIVARNADEALEKAH-----------------Q---KY-GKNVEIYQDPDVLDTWFSSALWPFSTLGWPDVSADDFKKFY 538 (809)
Q Consensus 480 ~~~~~~~~~~~~~~~-----------------~---~~-~~~~~~~~~~dvld~Wfds~~~~~~~~~~~~~~~~~~~~~~ 538 (809)
.++. ..|+.+... + .| .++..++|++||||||||||.++++.++ |..+ ..|..++
T Consensus 480 ~~~~--~~El~e~~~~~~~~~g~~~w~~~~idel~~~~~~~g~~~~rv~DvlDVWFDSGs~~~a~~~-~~~~-~~~~~~~ 555 (933)
T COG0060 480 ILVI--TEELEELVGQLVEEKGIDDWHRPDIDELLPPCPEDGKEYRRVPDVLDVWFDSGSTPYAVLH-PREN-LKFPALF 555 (933)
T ss_pred eecc--HHHHHHHHHHHhhhcCchhhhccchHhhcCCCCCCcceeEecCcceEEEEcCCCCcccccC-Cccc-ccCcccc
Confidence 3332 223222211 0 11 2345899999999999999999999887 5544 3344444
Q ss_pred CCcEEEeeehhHHhHHHHHHHHHHHhcCCCCceeEEEeeeEEccCCCcccccccCccChhhHHHhhCCchHHHHHhhCCC
Q 003578 539 PTTMLETGHDILFFWVARMVMMGIEFTGSVPFSHVYLHGLIRDSQGRKMSKTLGNVIDPIDTIKEFGADALRFTISLGTA 618 (809)
Q Consensus 539 p~d~~~~G~Di~~~w~~~~~~~~~~l~~~~Pf~~v~~hg~vld~~G~KMSKS~GN~I~p~dli~~ygaD~lR~~ll~~~~ 618 (809)
+|++++|+||+|+||.++++++.++.|+.||++|++|||++|.+|+|||||+||+|+|.+++++||||+||+|++++.+
T Consensus 556 -aD~~lEGsDQ~RGWF~Ssl~~s~a~~~~aPYk~vltHGfvlDe~GrKMSKSlGN~v~P~~V~~~yGADiLRLwv~ssd~ 634 (933)
T COG0060 556 -ADFYLEGSDQTRGWFYSSLLTSTALFGRAPYKNVLTHGFVLDEKGRKMSKSLGNVVDPQDVIDKYGADILRLWVASSDY 634 (933)
T ss_pred -CcEEEEeccccchhHHHHHHHHHHHcCCchHHHHhhcccEECCCCCCccccCCCcCCHHHHHHhhCchheeeeeeecCc
Confidence 5999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCcccccHHHHHHHHHHHHHHHHHHHHHHHhCCCCCchhhHHHHhhhccchhhhhcCCCchhHHHHHHHHHHHHHHHHHh
Q 003578 619 GQDLSLSIERLTANKAFTNKLWNAGKFILQNLPSQNDISRWEILLAYKFDEEECLCKAPLPECWVVSKLHMLIDTVTASY 698 (809)
Q Consensus 619 ~~d~~fs~~~l~~~~~~~~kl~N~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~~d~~il~~l~~~~~~v~~a~ 698 (809)
..|+.||++.++..++.+++|||+++|+++++.++++... .....++...|+|++++++++++++.++|
T Consensus 635 ~~dl~~s~~il~~~~~~~r~irNt~rF~l~nl~~fdp~~~-----------~~~~~~~~~~Drwil~rl~~l~~~v~eay 703 (933)
T COG0060 635 WEDLRFSDEILKQVREVYRKIRNTYRFLLGNLDDFDPKKD-----------AVLPEELRELDRWILSRLNSLVKEVREAY 703 (933)
T ss_pred hhccccCHHHHHHHHHHHHHHHHHHHHHHHhccCCCcccc-----------ccchhhcchhHHHHHHHHHHHHHHHHHHH
Confidence 9999999999999999999999999999999988776221 12234667889999999999999999999
Q ss_pred hcCChHHHHHHHHHHHHHhhHHHHHHHhhhhhhcC-CCcHHHHHHHHHHHHHHHHHHHHhccchhHHHHHHHHHhccC--
Q 003578 699 DKYFFGDVGRETYDFFWSDFADWYIEASKARLYRS-EYDSDAIIAQAVLLYIFENILKLLHPFMPFVTEELWQSLRKR-- 775 (809)
Q Consensus 699 e~~~f~~a~~~i~~f~~~~~~n~Yi~~~k~~l~~~-~~~~~~~~~~~~l~~vl~~l~~lL~P~~P~~aeeiw~~L~~~-- 775 (809)
++|+|+++++.+++|+..++++|||+.+|+|+|++ .+..+|++++++|++++..++++|+||+||+||+||+.|+..
T Consensus 704 e~y~f~~v~~~l~~F~~~dLS~~Yld~~kdr~y~~~~~s~~rraa~~~Ly~il~~l~~~lAPilPftaEeiw~~l~~~~~ 783 (933)
T COG0060 704 ENYDFHKVVRALMNFVSEDLSNWYLDIIKDRLYTEAADSPDRRAAQTTLYHILKALVRLLAPILPFTAEEIWQNLPGERK 783 (933)
T ss_pred HhcCHHHHHHHHHHHHHhhhhHHHHHHHHHHhhhcCCCCHHHHHHHHHHHHHHHHHHHHHcccchhhHHHHHHhCccCCC
Confidence 99999999999999998999999999999999998 677799999999999999999999999999999999999877
Q ss_pred CCceEecCCCCCCC-cC--CHHHHHHHHHHHH
Q 003578 776 KEALIVSPWPQTSL-PR--HMSAIKRFENLQS 804 (809)
Q Consensus 776 ~~sv~~~~wP~~~~-~~--d~~~~~~~~~~~~ 804 (809)
.+|||+.+||+.+. .. +..+...++..+.
T Consensus 784 ~eSVhl~~~p~~~~~~~~~~~~~~~r~~~~~k 815 (933)
T COG0060 784 EESVHLEDWPEVDEELIDVEAALAARWEALLK 815 (933)
T ss_pred CceeEeccCCcccccccchhHHHHHHHHHHHH
Confidence 68999999999985 44 3444555555443
No 11
>PTZ00427 isoleucine-tRNA ligase, putative; Provisional
Probab=100.00 E-value=9.3e-161 Score=1461.10 Aligned_cols=744 Identities=22% Similarity=0.401 Sum_probs=661.6
Q ss_pred CCCCCCCCCh-hhHHHHHHHHHhcCCCCCCCC--CCCCCEEEeCCCCCCCCCCcchhhHHHHHHHHHHHHHHHCCCcccc
Q 003578 56 KDTLPKTFDF-TSEERIYNWWESQGYFKPNFE--RGSDPFVISMPPPNVTGSLHMGHAMFVTLEDIMVRYHRMKGRPTLW 132 (809)
Q Consensus 56 ~~~~~~~~~~-~~E~~~~~~W~~~~~f~~~~~--~~~~~f~i~~~pPy~nG~lHiGH~~~~~~~Di~~Ry~rm~G~~V~~ 132 (809)
...+|+.|++ ++|++|+++|+++++|++..+ .++++|+|++|||||||.|||||+++++++|+++||+||+||+|+|
T Consensus 65 ~~~~~~~~~~~~~E~~~~~~W~e~~~f~~~~~~~~~~~~Fv~~~gPPyanG~lHiGHal~~tikDii~Ry~rm~G~~V~~ 144 (1205)
T PTZ00427 65 FTGVSENPNIVEEEEKVLKYWKSIDAFNTSNKLAKNKKAYIFYDGPPFATGLPHYGHLLAGIIKDCVTRYFYQCGFSVER 144 (1205)
T ss_pred ccCCCCCCCHHHHHHHHHHHHHhCCCcccCccccCCCCcEEEecCCCCCCCCcchhHHHHHHHHHHHHHHHHcCCCeecc
Confidence 4568889998 899999999999999999765 3567899999999999999999999999999999999999999999
Q ss_pred cCCCCCCCCchHHHHHHHHHHcCC-CccccCHHHHHHHHHHHHHHHHHHHHHHHHHhcccccCCCccccCChhhHHHHHH
Q 003578 133 LPGTDHAGIATQLVVEKMLAAEGI-KRVELSRDEFTKRVWEWKEKYGGTITSQIKRLGASCDWTRERFTLDEQLSRAVVE 211 (809)
Q Consensus 133 ~~G~D~~Gl~~~~~~e~~~~~~g~-~~~~~~~~~f~~~~~~~~~~~~~~~~~~l~~lgi~~Dw~~~~~T~d~~~~~~v~~ 211 (809)
++||||||||||.++|+.+...+. ...++++++|+++|++|+.++.+.+++++++||+++||+++|+|+||.|.+.|+|
T Consensus 145 ~~GwD~hGlPiE~~vEk~lg~~~k~~i~~~g~~~f~e~c~~~~~~~~~~~~~~~~rlG~~iDw~~~y~T~d~~~~~~v~~ 224 (1205)
T PTZ00427 145 KFGWDCHGLPIEYEIEKENNINKKEDILKMGIDVYNEKCRGIVLKYSNEWVKTVERIGRWIDFKNDYKTMDKTFMESVWW 224 (1205)
T ss_pred CCccCCCCcHHHHHHHHHhCCCcccchhhcCHHHHHHHHHHHHHHHHHHHHHHHHHhCcEEecCCCcCcCCHHHHHHHHH
Confidence 999999999999999987743332 3346899999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHcCceeecCcccccCCCCCcccCcccc--ccccCCCceEEEEEEecCC--------------------------
Q 003578 212 AFIRLHEKGLIYQGSYMVNWSPNLQTAVSDLEV--EYSEEPGTLYYIKYRVAGR-------------------------- 263 (809)
Q Consensus 212 ~f~~L~~~Gliy~~~~~v~w~p~~~t~lsd~Ev--~~~~~~~~~~~~~f~~~~~-------------------------- 263 (809)
+|.+|+++||||++.++|+|||.|+|+||++|| +|++..++++|++|++.+.
T Consensus 225 ~f~~L~ekGlIYr~~k~V~wcp~c~TaLS~~EV~~~ykd~~dpsi~v~F~l~~~~~~~~~~~~~~~~~~~~~~~~~i~y~ 304 (1205)
T PTZ00427 225 VFSELYKNNYVYKSFKVMPYSCKCNTPISNFELNLNYKDTPDPSIIISFVLCSDFPKVEEECNIEEDKQLLGEKYSVLYN 304 (1205)
T ss_pred HHHHHHHCCCEEecceeeccCCCCCCchhHHHhhcccccccCceEEEEeecccccccccccccccccccccccceeeccc
Confidence 999999999999999999999999999999999 7999999999999987641
Q ss_pred ---------------------CeeEEEEecCCccccCCcEEEECCCCch--h----------------------------
Q 003578 264 ---------------------SDFLTIATTRPETLFGDVALAVNPQDEH--Y---------------------------- 292 (809)
Q Consensus 264 ---------------------~~~l~v~Tt~petl~~~~av~v~p~~~~--y---------------------------- 292 (809)
+.+++|||||||||+||+||||||++++ |
T Consensus 305 ~~~~~~~~~~~~~~~~~~~~~~~~lliwTTtPwTLpan~AlaVnPd~~Yv~v~~~~~~~~~i~a~~~~~~~~~~~~~~~~ 384 (1205)
T PTZ00427 305 NKRENSNNGNNNSTNNVCYAQHSEILAWTTTPWTLPSNLALCVNEHFTYLRIHHVKSNRVVIVGECRLEWIMKELKWNVE 384 (1205)
T ss_pred cccccccccccccccccccCCCCEEEEEECCchhhhhceEEEECCCCeEEEEEecCCCeEEEEehHHHHHHHHhhccccc
Confidence 3689999999999999999999999651 1
Q ss_pred ----------hhcccCeeecCCC--------CCCeeeEEecCCccccCCCCceeecCCCChhhHHHHHHhCC--C----c
Q 003578 293 ----------SQFIGMMAIVPMT--------YGRHVPIISDKYVDKEFGTGVLKISPGHDHNDYLLARKLGL--P----I 348 (809)
Q Consensus 293 ----------~~l~g~~~~~P~~--------~~~~vpi~~~~~V~~~~GTG~v~~~P~h~~~D~~~~~~~~l--~----~ 348 (809)
++|+|.+|.+|+. .++.+||++++||++++|||+||+|||||++||+++++||| | +
T Consensus 385 ~~~v~~~~~G~~L~g~~Y~pl~~~~~~~~~~~~~~~pVi~~d~V~~~~GTGiVh~aPahg~~Dy~v~~k~gL~~~~~~~~ 464 (1205)
T PTZ00427 385 DLKIVNRFKGKELKGLRYKPLFTNFYEKYNFKERAYKILADDFVTDDAGTGIVHCAPTYGEDDFRVCKKNGVIDPEKNIF 464 (1205)
T ss_pred ccEEEEEeechhhCCCeeeCCccccccccccCCceeEEEccCccCCCCCceeeEecCCCChhHHHHHHHcCCCCcccccc
Confidence 2456888888762 26789999999999999999999999999999999999999 2 7
Q ss_pred eeecCCCCcccccccccCCCCHHHHHHHHHHHHHHCCCeeeeecccccCcccccCCCeeEEeeccceeeeccHHHHHHHH
Q 003578 349 LNVMNKDGTLNEVAGLFRGLDRFEARKKLWSDLEETGLAVKKEPHTLRVPRSQRGGEVIEPLVSKQWFVTMEPLAEKALH 428 (809)
Q Consensus 349 ~~~~~~~G~~~~~~g~~~G~~~~~a~~~i~~~L~~~g~~~~~~~~~~~~p~c~r~~~~i~~~~~~qwfl~~~~~~~~~~~ 428 (809)
++++|++|+|++++|.|+|+.++|||+.|+++|+++|++++.+++.|++|+|||||+|+++++++|||++++++++++++
T Consensus 465 ~~~vd~~G~~~~~~~~~~G~~v~dA~~~Ii~~Lk~~g~L~~~e~~~H~yP~cwR~~tpli~~a~~QWFI~~~~~k~~~l~ 544 (1205)
T PTZ00427 465 IDPLDANGYFTNEVEEVQNLYIKEADNVIKKKLKNENRLLSNNTIVHSYPFCWRSDTPLIYRAIPAWFIRVSNSTNELVK 544 (1205)
T ss_pred ccccCCCceecCCCcccCCCCHHHhHHHHHHHHHhCCCeeeeeeeeccCCEeCCCCCEEEEEecceeEEeCcHHHHHHHH
Confidence 89999999999999999999999999999999999999999999999999999999999999999999999999999998
Q ss_pred HHhcCCceEecchh-HHHHHHHHhcCCceeeeccccccceeeEEEEcCCcccEEEcCChhHHHHHHhh------------
Q 003578 429 AVEKGELTIMPERF-EKIYNHWLSNIKDWCISRQLWWGHRIPVWYIVGKEEEYIVARNADEALEKAHQ------------ 495 (809)
Q Consensus 429 ~~~~~~~~~~P~~~-~~~~~~~l~~l~Dw~ISRq~~WG~piP~~~~~~~~~~~~~~~~~~~~~~~~~~------------ 495 (809)
++ ++++|+|++. ++++.+||++++||||||||+||||||+|+|+. ++.+++..+.+++.+....
T Consensus 545 ~~--~~i~w~P~~~~~~r~~~wl~n~~DWcISRqR~WGtPIPvW~~~~-~~~~~~i~s~~el~~~~~~~~~~dlh~~~iD 621 (1205)
T PTZ00427 545 NN--ETTYWIPAHIKEKKFHNWIKDAKDWCISRNRYWGTPIPIWADEK-METVICVESIKHLEELSGVKNINDLHRHFID 621 (1205)
T ss_pred cC--CccEEeCchhhHhHHHHHHhcCccceeeeccccCccceeEEcCC-CCeEeccCCHHHHHHHhccccchhhcccccC
Confidence 66 4799999998 699999999999999999999999999999965 3556777777765543220
Q ss_pred ----hc--CC-CccccccCCccceeecccCccceecCCCCC-ChhhhhhcCCCcEEEeeehhHHhHHHHHHHHHHHhcCC
Q 003578 496 ----KY--GK-NVEIYQDPDVLDTWFSSALWPFSTLGWPDV-SADDFKKFYPTTMLETGHDILFFWVARMVMMGIEFTGS 567 (809)
Q Consensus 496 ----~~--~~-~~~~~~~~dvld~Wfds~~~~~~~~~~~~~-~~~~~~~~~p~d~~~~G~Di~~~w~~~~~~~~~~l~~~ 567 (809)
.| +. ...++|++||||||||||+||++.++||.+ ++++|+++||+|++++|+||+|||+++|++++.+++|+
T Consensus 622 ~~~~~~~~g~~~~~~~r~~DVlD~WFdSg~~p~a~~~~P~~~~~~~f~~~fPaD~i~eG~Dq~rgWf~s~l~~s~~l~~~ 701 (1205)
T PTZ00427 622 HIEIKNPKGKTYPKLKRIPEVFDCWFESGSMPYAKVHYPFSTEKEDFHKIFPADFIAEGLDQTRGWFYTLLVISTLLFDK 701 (1205)
T ss_pred hhhccCCccccccceeecCceEEEEEeCCCChHHHhCCCcccchhhHhccCCceEEEEecchhccHHHHHHHHHHHhcCC
Confidence 01 11 124899999999999999999999999985 35789999999999999999999999999999999999
Q ss_pred CCceeEEEeeeEEccCCCcccccccCccChhhHHHhhCCchHHHHHhhCCC--CCcccccHHHHH-HHHHHHHHHHHHHH
Q 003578 568 VPFSHVYLHGLIRDSQGRKMSKTLGNVIDPIDTIKEFGADALRFTISLGTA--GQDLSLSIERLT-ANKAFTNKLWNAGK 644 (809)
Q Consensus 568 ~Pf~~v~~hg~vld~~G~KMSKS~GN~I~p~dli~~ygaD~lR~~ll~~~~--~~d~~fs~~~l~-~~~~~~~kl~N~~~ 644 (809)
.||++|++||+++|.+|+|||||+||+|+|.+++++||+|+|||||++... ++|++|+++.+. ..+++++++||+.+
T Consensus 702 ~PfK~VlvHG~Vld~dG~KMSKSlGNvIDP~evI~kYGADaLR~~Lls~~~~~~~Dl~Fse~~v~e~~r~~l~klwN~~r 781 (1205)
T PTZ00427 702 APFKNLICNGLVLASDGKKMSKRLKNYPDPLYILDKYGADSLRLYLINSVAVRAENLKFQEKGVNEVVKSFILPFYHSFR 781 (1205)
T ss_pred CCcceeEEccEEEcCCCCCcccCCCCCCCHHHHHHhcCCcHHHHHHHhcCCCCCcccccCHHHHHHHHHHHHHHHHHHHH
Confidence 999999999999999999999999999999999999999999999997644 799999999996 48999999999999
Q ss_pred HHHHhCCCCCchhhHHHHhhhcc--chhhhhcCCCchhHHHHHHHHHHHHHHHHHhhcCChHHHHHHHHHHHHHhhHHHH
Q 003578 645 FILQNLPSQNDISRWEILLAYKF--DEEECLCKAPLPECWVVSKLHMLIDTVTASYDKYFFGDVGRETYDFFWSDFADWY 722 (809)
Q Consensus 645 ~~~~~l~~~~~~~~~~~~~~~~~--~~~~~~~~l~~~d~~il~~l~~~~~~v~~a~e~~~f~~a~~~i~~f~~~~~~n~Y 722 (809)
|+.+++.+...... .++ .........+..|+||+++++++++.+.++|++|+|++|+++|++|++ ++||||
T Consensus 782 F~~~~i~~~~~~~~------~~f~~~~~~~~~~~~~~DrWILs~l~~li~~v~~~me~Y~f~~A~~~i~~Fi~-~lsnwY 854 (1205)
T PTZ00427 782 FFSQEVTRYECLNK------KQFLFNTDYIYKNDNIMDQWIFSSVQSLTKSVHTEMKAYKLYNVLPKLLQFIE-NLTNWY 854 (1205)
T ss_pred HHHhcccccccccc------ccCCcCcccccccCCHHHHHHHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHH-HhccHH
Confidence 99886643211000 000 000001234567999999999999999999999999999999999995 699999
Q ss_pred HHHhhhhhhcCCCcHHHHHHHHHHHHHHHHHHHHhccchhHHHHHHHHHhccC-------------------------CC
Q 003578 723 IEASKARLYRSEYDSDAIIAQAVLLYIFENILKLLHPFMPFVTEELWQSLRKR-------------------------KE 777 (809)
Q Consensus 723 i~~~k~~l~~~~~~~~~~~~~~~l~~vl~~l~~lL~P~~P~~aeeiw~~L~~~-------------------------~~ 777 (809)
|+.+|+|++.+.+...+.+++.+|+++|..+++||+|||||+||+||++|+.. .+
T Consensus 855 Ie~~K~rl~~~~~~~~~~~a~~tL~~vL~~~~~LLaPf~PfiaEeiyq~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 934 (1205)
T PTZ00427 855 IRLNRDRMRGSLGEENCLQSLCTTYRTLHLFTVLMAPFTPFITEYIYQQLRRVKSTNEHNENNETGNTKEGDLNRGVIHK 934 (1205)
T ss_pred HHHcchhhccCCCcHHHHHHHHHHHHHHHHHHHHccccchHHHHHHHHHhhhccccccccccccccccccccccccCCCC
Confidence 99999999876434456788899999999999999999999999999999631 25
Q ss_pred ceEecCCCCCCC-c-CCHHHHHHHHHHHHHHhhC
Q 003578 778 ALIVSPWPQTSL-P-RHMSAIKRFENLQSLVILI 809 (809)
Q Consensus 778 sv~~~~wP~~~~-~-~d~~~~~~~~~~~~~~~~~ 809 (809)
|||+++||+.+. . +|++++..|+.++++++++
T Consensus 935 Svh~~~~P~~~~~~~~d~~~e~~~~~~~~ii~~~ 968 (1205)
T PTZ00427 935 SVHFIMLPQVDEKYIIDYEIIELIEKMKDVILLG 968 (1205)
T ss_pred eeEeeCCCCCcchhccCHHHHHHHHHHHHHHHHH
Confidence 999999999986 3 7999999999999998763
No 12
>PLN02882 aminoacyl-tRNA ligase
Probab=100.00 E-value=3.4e-158 Score=1445.74 Aligned_cols=741 Identities=25% Similarity=0.409 Sum_probs=661.5
Q ss_pred CCCCCh-hhHHHHHHHHHhcCCCCCCCC--CCCCCEEEeCCCCCCCCCCcchhhHHHHHHHHHHHHHHHCCCcccccCCC
Q 003578 60 PKTFDF-TSEERIYNWWESQGYFKPNFE--RGSDPFVISMPPPNVTGSLHMGHAMFVTLEDIMVRYHRMKGRPTLWLPGT 136 (809)
Q Consensus 60 ~~~~~~-~~E~~~~~~W~~~~~f~~~~~--~~~~~f~i~~~pPy~nG~lHiGH~~~~~~~Di~~Ry~rm~G~~V~~~~G~ 136 (809)
++.|++ ++|++|+++|++.++|++..+ .++++|+|++||||+||.|||||+++++++|+++||+||+||+|+|++||
T Consensus 5 ~~~~~~~~~E~~~~~~W~e~~~f~~~~~~~~~~~~f~~~dgPPyanG~~HiGH~~~~~ikDii~Ry~rm~G~~V~~~~Gw 84 (1159)
T PLN02882 5 GKDFSFPKQEEKILSLWSEIDAFKTQLKRTEGLPEYIFYDGPPFATGLPHYGHILAGTIKDIVTRYQSMTGHHVTRRFGW 84 (1159)
T ss_pred CCCCCHHHHHHHHHHHHHhCCCccccccccCCCCCEEEeCCCCCCCCcchhhHHHHHHHHHHHHHHHHcCCCcccccCcc
Confidence 457898 899999999999999998754 35678999999999999999999999999999999999999999999999
Q ss_pred CCCCCchHHHHHHHHHHcC-CCccccCHHHHHHHHHHHHHHHHHHHHHHHHHhcccccCCCccccCChhhHHHHHHHHHH
Q 003578 137 DHAGIATQLVVEKMLAAEG-IKRVELSRDEFTKRVWEWKEKYGGTITSQIKRLGASCDWTRERFTLDEQLSRAVVEAFIR 215 (809)
Q Consensus 137 D~~Gl~~~~~~e~~~~~~g-~~~~~~~~~~f~~~~~~~~~~~~~~~~~~l~~lgi~~Dw~~~~~T~d~~~~~~v~~~f~~ 215 (809)
||||+|||.++|+.+...+ ....++++++|++.|++|+.+|.+.+++++++||+++||+++|+|+|+.|.+.|+|+|.+
T Consensus 85 D~hGlPiE~~vek~lgi~~~~~i~~~g~~~f~~~c~~~~~~~~~~~~~~~~rlG~~~D~~~~y~T~d~~~~~~v~~~f~~ 164 (1159)
T PLN02882 85 DCHGLPVEYEIDKKLGIKRRDDVLKMGIDKYNEECRSIVTRYSKEWEKTVTRTGRWIDFENDYKTMDPKFMESVWWVFKQ 164 (1159)
T ss_pred CCCCcHHHHHHHHHcCCCCccchhhcCHHHHHHHHHHHHHHHHHHHHHHHHHcCcEEECCCCcCcCCHHHHHHHHHHHHH
Confidence 9999999999887652211 123458999999999999999999999999999999999999999999999999999999
Q ss_pred HHHcCceeecCcccccCCCCCcccCcccc--ccccCCCceEEEEEEecCCC--eeEEEEecCCccccCCcEEEECCCCc-
Q 003578 216 LHEKGLIYQGSYMVNWSPNLQTAVSDLEV--EYSEEPGTLYYIKYRVAGRS--DFLTIATTRPETLFGDVALAVNPQDE- 290 (809)
Q Consensus 216 L~~~Gliy~~~~~v~w~p~~~t~lsd~Ev--~~~~~~~~~~~~~f~~~~~~--~~l~v~Tt~petl~~~~av~v~p~~~- 290 (809)
|+++|+||++.++|+|||.|+|+|||+|+ +|++..++++||+|++.+.. .+++|||||||||+||+||||||+++
T Consensus 165 l~~kGliyr~~~~v~wcp~~~TaLs~~E~~~~Yk~~~~~si~v~F~l~~~~~~~~l~iwTTtPwTLpsn~Al~VnP~~~Y 244 (1159)
T PLN02882 165 LFEKGLVYKGFKVMPYSTACKTPLSNFEAGLNYKDVSDPAVMVSFPIVGDPDNASFVAWTTTPWTLPSNLALCVNPNFTY 244 (1159)
T ss_pred HHHCCCEEecceeEeecCCCCCCcchhhhhhhcccCCCcEEEEEEEecCCCCCcEEEEEeCCccccccCeEEEECCCCcE
Confidence 99999999999999999999999999888 79999999999999997653 79999999999999999999999986
Q ss_pred -----------------hhh-------------------------------hcccCeeecCCC-----CCCeeeEEecCC
Q 003578 291 -----------------HYS-------------------------------QFIGMMAIVPMT-----YGRHVPIISDKY 317 (809)
Q Consensus 291 -----------------~y~-------------------------------~l~g~~~~~P~~-----~~~~vpi~~~~~ 317 (809)
+|. +|+|++|.+|+. .++.+||++++|
T Consensus 245 ~~v~~~~~~~~~i~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~G~~L~g~~y~p~~~~~~~~~~~~~~Vi~~~~ 324 (1159)
T PLN02882 245 VKVRNKYTGKVYIVAESRLSALPTAKPKSKKGSKPENAAEGYEVLAKVPGSSLVGKKYEPLFDYFSEFSDTAFRVVADDY 324 (1159)
T ss_pred EEEEecCCCeEEEEhHHHHHHHHhhhhcccccccccccccccEEEEEecchhhcCCEEECCccccccccCceEEEEccCc
Confidence 221 588999987762 146899999999
Q ss_pred ccccCCCCceeecCCCChhhHHHHHHhCC-----CceeecCCCCcccccccccCCCCHHHHHHHHHHHHHHCCCeeeeec
Q 003578 318 VDKEFGTGVLKISPGHDHNDYLLARKLGL-----PILNVMNKDGTLNEVAGLFRGLDRFEARKKLWSDLEETGLAVKKEP 392 (809)
Q Consensus 318 V~~~~GTG~v~~~P~h~~~D~~~~~~~~l-----~~~~~~~~~G~~~~~~g~~~G~~~~~a~~~i~~~L~~~g~~~~~~~ 392 (809)
|++++|||+||+|||||++||++++++|| |+++++|++|+|++.+|.|+|+.++||++.|+++|+++|++++.++
T Consensus 325 V~~~~GTGiVh~aPahG~~Dy~v~~~~gl~~~~~~~~~~vd~~G~~~~~~~~~~G~~v~eA~~~Ii~~Lk~~g~L~~~~~ 404 (1159)
T PLN02882 325 VTDDSGTGVVHCAPAFGEDDYRVCLANGIIEKGGNLPVPVDDDGCFTEKVTDFSGRYVKDADKDIIAAIKAKGRLVKSGS 404 (1159)
T ss_pred cCCCCCcceeEecCCCChhHHHHHHHcCCCccccCccceECCCceEccCCcccCCCCHHHhhHHHHHHHHHCCCccceee
Confidence 99999999999999999999999999999 7999999999999999999999999999999999999999999999
Q ss_pred ccccCcccccCCCeeEEeeccceeeeccHHHHHHHHHHhcCCceEecchh-HHHHHHHHhcCCceeeeccccccceeeEE
Q 003578 393 HTLRVPRSQRGGEVIEPLVSKQWFVTMEPLAEKALHAVEKGELTIMPERF-EKIYNHWLSNIKDWCISRQLWWGHRIPVW 471 (809)
Q Consensus 393 ~~~~~p~c~r~~~~i~~~~~~qwfl~~~~~~~~~~~~~~~~~~~~~P~~~-~~~~~~~l~~l~Dw~ISRq~~WG~piP~~ 471 (809)
+.|++|+|||||+|+++++++||||+++++++++++.++ +++|+|++. ++++.+||++++||||||||+||+|||+|
T Consensus 405 ~~Hsyp~cwR~~tpli~~a~~qWFi~~~~~k~~~l~~~~--~i~w~P~~~~~~r~~~wl~~~~DW~ISRqR~WGtPIPvw 482 (1159)
T PLN02882 405 ITHSYPFCWRSDTPLIYRAVPSWFVKVEEIKDRLLENNK--QTYWVPDYVKEKRFHNWLENARDWAVSRSRFWGTPLPIW 482 (1159)
T ss_pred eecCCCEeeCCCCEEEEEecceeEEEcHHHHHHHHHhhC--CcEEECCcchhhHHHHHHhcCcccceeeccccCCccceE
Confidence 999999999999999999999999999999999999764 799999999 58999999999999999999999999999
Q ss_pred EEcCCcccEEEcCChhHHHHHHh-----------------hhcCC-CccccccCCccceeecccCccceecCCCCCChhh
Q 003578 472 YIVGKEEEYIVARNADEALEKAH-----------------QKYGK-NVEIYQDPDVLDTWFSSALWPFSTLGWPDVSADD 533 (809)
Q Consensus 472 ~~~~~~~~~~~~~~~~~~~~~~~-----------------~~~~~-~~~~~~~~dvld~Wfds~~~~~~~~~~~~~~~~~ 533 (809)
+|++ ++..++..+.+++.+... ..++. ...++|++||||||||||+||++.++||.++.+.
T Consensus 483 ~~~~-~~~~~~~~s~~el~~~~~~~~~dlh~~~id~i~~p~~~~~~~~~~~r~~dVlD~WFdSg~~p~a~~~~p~e~~~~ 561 (1159)
T PLN02882 483 ISDD-GEEVVVIGSIAELEKLSGVKVTDLHRHFIDHITIPSSRGPEFGVLRRVDDVFDCWFESGSMPYAYIHYPFENKEL 561 (1159)
T ss_pred EeCC-CCeEEecCcHHHHHHHhCCchhhccccchhhhccccccCCchhceEecCceeeeeeccCccHHHHcCCcccChhH
Confidence 9965 345777778777654421 11111 1368999999999999999999999999877678
Q ss_pred hhhcCCCcEEEeeehhHHhHHHHHHHHHHHhcCCCCceeEEEeeeEEccCCCcccccccCccChhhHHHhhCCchHHHHH
Q 003578 534 FKKFYPTTMLETGHDILFFWVARMVMMGIEFTGSVPFSHVYLHGLIRDSQGRKMSKTLGNVIDPIDTIKEFGADALRFTI 613 (809)
Q Consensus 534 ~~~~~p~d~~~~G~Di~~~w~~~~~~~~~~l~~~~Pf~~v~~hg~vld~~G~KMSKS~GN~I~p~dli~~ygaD~lR~~l 613 (809)
|+++||+|++++|+||+|||+++|++++.+++|+.||+++++||++++.+|+|||||+||+|+|.+++++||+|+|||||
T Consensus 562 f~~~~PaD~i~eG~Dq~RgWf~~ll~~s~~l~~~~pfk~VivhG~vlde~G~KMSKSlGNvIdP~evi~~YGADaLR~~L 641 (1159)
T PLN02882 562 FEKNFPADFVAEGLDQTRGWFYTLMVLSTALFDKPAFKNLICNGLVLAEDGKKMSKSLKNYPDPNEVIDKYGADALRLYL 641 (1159)
T ss_pred hhccCCceEEEEecchhhhHHHHHHHHHHHhcCCCCcceeEEccEEECCCCCCcccCCCCCCCHHHHHHHhCcHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hhCCC--CCcccccHHHHHH-HHHHHHHHHHHHHHHHHhCCCCCchhhHHHHhhhccchhhhh-cCCCchhHHHHHHHHH
Q 003578 614 SLGTA--GQDLSLSIERLTA-NKAFTNKLWNAGKFILQNLPSQNDISRWEILLAYKFDEEECL-CKAPLPECWVVSKLHM 689 (809)
Q Consensus 614 l~~~~--~~d~~fs~~~l~~-~~~~~~kl~N~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~-~~l~~~d~~il~~l~~ 689 (809)
+++++ ++|++|+++.+.+ .+++++++||+.+|+..++.+.... ..... .+...... ...+..|+|+++++++
T Consensus 642 l~s~~~~~~d~~fs~~~v~~~~~~~l~kl~Na~rfl~~~~~~~~~~-~~~~~---~p~~~~~~~~~~~~~D~wIls~l~~ 717 (1159)
T PLN02882 642 INSPVVRAEPLRFKEEGVFGVVKDVFLPWYNAYRFLVQNAKRLEVE-GGAPF---VPLDLAKLQNSANVLDRWINSATQS 717 (1159)
T ss_pred HhCCcccCcCcccCHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhc-cccCC---CccccccccccCCHHHHHHHHHHHH
Confidence 98765 7899999999987 4779999999999988775431100 00000 00000001 1235679999999999
Q ss_pred HHHHHHHHhhcCChHHHHHHHHHHHHHhhHHHHHHHhhhhhhcCCCcHHHHHHHHHHHHHHHHHHHHhccchhHHHHHHH
Q 003578 690 LIDTVTASYDKYFFGDVGRETYDFFWSDFADWYIEASKARLYRSEYDSDAIIAQAVLLYIFENILKLLHPFMPFVTEELW 769 (809)
Q Consensus 690 ~~~~v~~a~e~~~f~~a~~~i~~f~~~~~~n~Yi~~~k~~l~~~~~~~~~~~~~~~l~~vl~~l~~lL~P~~P~~aeeiw 769 (809)
+++.+.++|++|+|++|++.|++|+. ++||+||+.+|+|++.+++...+++++.++++++..+++||+|||||+||+||
T Consensus 718 li~~v~~~me~y~f~~A~~~I~~Fv~-~lsN~YIe~~Kprl~~~~~~~~~~~al~tL~~vL~~l~~LLaPfmPf~aEeI~ 796 (1159)
T PLN02882 718 LVKFVREEMGAYRLYTVVPYLVKFID-NLTNIYVRFNRKRLKGRTGEEDCRTALSTLYNVLLTSCKVMAPFTPFFTEVLY 796 (1159)
T ss_pred HHHHHHHHHHccCHHHHHHHHHHHHH-HHhHHHHHhCCHhhhCCCChHHHHHHHHHHHHHHHHHHHHhhchhhHHHHHHH
Confidence 99999999999999999999999984 69999999999999987555567889999999999999999999999999999
Q ss_pred HHhcc----CCCceEecCCCCCCC-cCCHHHHHHHHHHHHHHhh
Q 003578 770 QSLRK----RKEALIVSPWPQTSL-PRHMSAIKRFENLQSLVIL 808 (809)
Q Consensus 770 ~~L~~----~~~sv~~~~wP~~~~-~~d~~~~~~~~~~~~~~~~ 808 (809)
++|+. ..+|||+++||+.++ .+|+++++.|+.+++++.+
T Consensus 797 q~L~~~~~~~~~SVh~~~~P~~~~~~~d~~le~~~~~~~~ii~~ 840 (1159)
T PLN02882 797 QNLRKVLPGSEESIHYCSFPQVDEGELDERIEQSVSRMQTVIEL 840 (1159)
T ss_pred HHhccccCCCCCceeecCCCCcchhhcchhHHHHHHHHHHHHHH
Confidence 99975 347999999999985 7899999999999998875
No 13
>PRK13804 ileS isoleucyl-tRNA synthetase; Provisional
Probab=100.00 E-value=9.6e-158 Score=1429.68 Aligned_cols=732 Identities=27% Similarity=0.435 Sum_probs=656.1
Q ss_pred ccCCCCCCCCC-----CCh-hhHHHHHHHHHhcCCCCCCCC--CCCCCEEEeCCCCCCCCCCcchhhHHHHHHHHHHHHH
Q 003578 52 AENNKDTLPKT-----FDF-TSEERIYNWWESQGYFKPNFE--RGSDPFVISMPPPNVTGSLHMGHAMFVTLEDIMVRYH 123 (809)
Q Consensus 52 ~~~~~~~~~~~-----~~~-~~E~~~~~~W~~~~~f~~~~~--~~~~~f~i~~~pPy~nG~lHiGH~~~~~~~Di~~Ry~ 123 (809)
+++++..||++ +++ ++|++||++|++.++|++..+ .++++|+|++|||||||.||||||+|++++|+++||+
T Consensus 8 ~y~~tl~lp~t~f~m~~~~~~~E~~~~~~W~~~~~y~~~~~~~~~~~~f~l~dgPPyanG~lHiGHaln~~lkDii~Ry~ 87 (961)
T PRK13804 8 DYKKTLNLPQTAFPMRAGLPQKEPEIQARWEEIDLYKKLREQAKGRPKFVLHDGPPYANGNIHIGHALNKILKDVIVRSK 87 (961)
T ss_pred chHhhcCCCCCCCCCCCChHHhHHHHHHHHHHCCCccccccccCCCCcEEEeCCCCCCCCCccHHHHHHHHHHHHHHHHH
Confidence 78889888875 444 789999999999999998653 3577899999999999999999999999999999999
Q ss_pred HHCCCcccccCCCCCCCCchHHHHHHHHHHcCCCccccCHHHHHHHHHHHHHHHHHHHHHHHHHhcccccCCCccccCCh
Q 003578 124 RMKGRPTLWLPGTDHAGIATQLVVEKMLAAEGIKRVELSRDEFTKRVWEWKEKYGGTITSQIKRLGASCDWTRERFTLDE 203 (809)
Q Consensus 124 rm~G~~V~~~~G~D~~Gl~~~~~~e~~~~~~g~~~~~~~~~~f~~~~~~~~~~~~~~~~~~l~~lgi~~Dw~~~~~T~d~ 203 (809)
||+||+|+|++||||||||||.++++.++.+|+++.++++++|++.|++|+.++++.|++||++||+++||+|+|+|+||
T Consensus 88 rm~G~~v~~~pGwD~hGlPiE~~vek~~~~~~~~~~~~~~~~f~~~c~~~a~~~i~~~~~~~~rlG~~~Dw~~~y~T~d~ 167 (961)
T PRK13804 88 QMLGFDANYVPGWDCHGLPIEWKIEEKYRAKGKNKDEVPVAEFRKECREYALSWIDVQREEFKRLGVLGDWDNPYTTMDF 167 (961)
T ss_pred HhcCCcccCCCCcCCCCcHHHHHHHHhhhhcCCChHhCCHHHHHHHHHHHHHHHHHHHHHHHHHhCceecCCCCcCcCCH
Confidence 99999999999999999999999998887778888999999999999999999999999999999999999999999999
Q ss_pred hhHHHHHHHHHHHHHcCceeecCcccccCCCCCcccCccccccccCCCceEEEEEEecCC------CeeEEEEecCCccc
Q 003578 204 QLSRAVVEAFIRLHEKGLIYQGSYMVNWSPNLQTAVSDLEVEYSEEPGTLYYIKYRVAGR------SDFLTIATTRPETL 277 (809)
Q Consensus 204 ~~~~~v~~~f~~L~~~Gliy~~~~~v~w~p~~~t~lsd~Ev~~~~~~~~~~~~~f~~~~~------~~~l~v~Tt~petl 277 (809)
.|+++++++|.+|+++|+||++.++|+|||.|+|+|||+||+|.+..++++||+|++.++ +.+++|||||||||
T Consensus 168 ~y~~~~~~~F~~l~~kGliyr~~kpV~Wcp~~~TaLa~~Evey~~~~s~~~~v~F~~~~~~~~~~~~~~lviwTTtPwTl 247 (961)
T PRK13804 168 HAEARIAREFGKFAAKGQLYRGSKPVMWSVVERTALAEAEIEYHDIESDTIWVKFPVKDGKGILDSGTYVVIWTTTPWTI 247 (961)
T ss_pred HHHHHHHHHHHHHHHCCCEEeCCcceecCCCCCCCccchhcccccccCceEEEEEEecCcccccCCCCeEEEEeCCchhh
Confidence 999999999999999999999999999999999999999999999999999999999653 47899999999999
Q ss_pred cCCcEEEECCCCc-------------------h-------------------hh--------hcccCeeecCCCCCC---
Q 003578 278 FGDVALAVNPQDE-------------------H-------------------YS--------QFIGMMAIVPMTYGR--- 308 (809)
Q Consensus 278 ~~~~av~v~p~~~-------------------~-------------------y~--------~l~g~~~~~P~~~~~--- 308 (809)
+||+||||||+++ + |+ +|+|+++.||+ .++
T Consensus 248 ~an~aiav~p~~~Y~~v~~~~~~~~~~~~~~e~~iva~~~~~~~~~~~~~~~~~~~~~~~g~~L~g~~~~~P~-~~~~~~ 326 (961)
T PRK13804 248 PANRAISYSPDIEYGLYEVTGAENDFWAKPGERLVVADALAESVAKKAGVESFERLADVKGEDLEKIVCAHPL-DGLDGY 326 (961)
T ss_pred hhCeEEEECCCCceEEEEeccccccccccCCcEEEeHHHHHHHHHHHhCCCCcEEEEEEEhhhccCCEEECCC-CCcccc
Confidence 9999999999973 3 22 68999999999 467
Q ss_pred --eeeEEecCCccccCCCCceeecCCCChhhHHHHHHhCC-CceeecCCCCcccccccc--------cCCCCHHHHHHHH
Q 003578 309 --HVPIISDKYVDKEFGTGVLKISPGHDHNDYLLARKLGL-PILNVMNKDGTLNEVAGL--------FRGLDRFEARKKL 377 (809)
Q Consensus 309 --~vpi~~~~~V~~~~GTG~v~~~P~h~~~D~~~~~~~~l-~~~~~~~~~G~~~~~~g~--------~~G~~~~~a~~~i 377 (809)
.+||++++||++++|||+||+|||||++||+++++||| |+++++|++|+|++++|. |+|+.++|||+.|
T Consensus 327 ~~~~pvi~~~~V~~~~GTG~Vh~aPahg~~Dy~~~~~~~l~~~~~~vd~~G~~~~~~~~~~g~~v~~~~G~~~~ea~~~I 406 (961)
T PRK13804 327 EFEVPVLDGDHVTDDAGTGFVHTAPGHGREDFNVWMKYGRTEIPVTVDEDGFYTENAPGFGGARVIDDEGKKYGDANKAV 406 (961)
T ss_pred cceeEEEecCccCCCCCCceEEeCCCCCHHHHHHHHHcCCCcccccCCCCeEEccCCCccccccccccCCcchhhhhHHH
Confidence 89999999999999999999999999999999999999 999999999999999887 8999999999999
Q ss_pred HHHHHHCCCeeeeecccccCcccccCCCeeEEeeccceeeeccH-------HHHHHHHHHhcCCceEecchhHHHHHHHH
Q 003578 378 WSDLEETGLAVKKEPHTLRVPRSQRGGEVIEPLVSKQWFVTMEP-------LAEKALHAVEKGELTIMPERFEKIYNHWL 450 (809)
Q Consensus 378 ~~~L~~~g~~~~~~~~~~~~p~c~r~~~~i~~~~~~qwfl~~~~-------~~~~~~~~~~~~~~~~~P~~~~~~~~~~l 450 (809)
+++|++.|++++.+++.|++|+|||||+||++++++|||+++++ ++++++++++ +++|+|++.++++.+||
T Consensus 407 i~~L~~~g~l~~~~~~~h~yp~~wR~~~pii~r~t~QWFi~~~~~~~~~~~~k~~al~~i~--~v~~~P~~~~~r~~~~i 484 (961)
T PRK13804 407 IEKLIEAGLLLARGRLKHSYPHSWRSKKPVIFRNTPQWFISMDKDLGDGTTLRSRALDAID--KTRFVPAAGQNRLYNMI 484 (961)
T ss_pred HHHHHhCCCcccccceecCCCccCCCCCeEEEeccccccEEcCCcccchHHHHHHHHHHHh--ccEEECHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999998 9999999996 79999999999999999
Q ss_pred hcCCceeeeccccccceeeEEEEcCCcccEEEcCCh----hHHHHHH--------------hhhcCCCccccccCCccce
Q 003578 451 SNIKDWCISRQLWWGHRIPVWYIVGKEEEYIVARNA----DEALEKA--------------HQKYGKNVEIYQDPDVLDT 512 (809)
Q Consensus 451 ~~l~Dw~ISRq~~WG~piP~~~~~~~~~~~~~~~~~----~~~~~~~--------------~~~~~~~~~~~~~~dvld~ 512 (809)
++++||||||||+||+|||+|||++ ++.++.... .+...+. ...++++..++|++|||||
T Consensus 485 ~~~~DWcISRQR~WG~PIP~~~~~~--~~~~~~~~~~~~~~~~~~~~g~~~w~~~~~~~~~~~~~~~~~~~~r~~DvlDv 562 (961)
T PRK13804 485 EDRPDWVISRQRAWGVPIPIFVAED--GEILMDEEVNARIADAFEEEGADAWFAEGAKERFLGGFHPNGEFTKVTDILDV 562 (961)
T ss_pred hcCccceeeeeccCCceeeEEEcCC--CCEeccHHHHHHHHHHHHhcCCccccccCHHHhcCcccCcccceEecCcceee
Confidence 9999999999999999999999953 222221111 1111111 0111124568999999999
Q ss_pred eecccCccceecCCCCCChhhhhhcCCCcEEEeeehhHHhHHHHHHHHHHHhcCCCCceeEEEeeeEEccCCCccccccc
Q 003578 513 WFSSALWPFSTLGWPDVSADDFKKFYPTTMLETGHDILFFWVARMVMMGIEFTGSVPFSHVYLHGLIRDSQGRKMSKTLG 592 (809)
Q Consensus 513 Wfds~~~~~~~~~~~~~~~~~~~~~~p~d~~~~G~Di~~~w~~~~~~~~~~l~~~~Pf~~v~~hg~vld~~G~KMSKS~G 592 (809)
|||||++++..+++ +.+| .||+|+|++|+||+|||+.++++++.+++|..||++|++||+++|.+|+|||||+|
T Consensus 563 WFdSg~s~~~~~~~----~~~~--~~PaD~~~eG~Di~rgWF~s~ll~s~~~~~~~P~k~V~~HG~vld~~G~KMSKSlG 636 (961)
T PRK13804 563 WFDSGSTHAFVLED----RPDL--KWPADLYLEGSDQHRGWFNSSLLESCGTRGRAPYKAVLTHGFTLDEKGEKMSKSLG 636 (961)
T ss_pred eecCCCCccccccC----Cccc--CCCceEEEEEcccccHHHHHHHHHHHHhcCCCChhhEEEeccEECCCCCCccCCCC
Confidence 99999877654432 1334 58999999999999999999999999999999999999999999999999999999
Q ss_pred CccChhhHHHhhCCchHHHHHhhCCCCCcccccHHHHHHHHHHHHHHHHHHHHHHHhCCCCCchhhHHHHhhhccchhhh
Q 003578 593 NVIDPIDTIKEFGADALRFTISLGTAGQDLSLSIERLTANKAFTNKLWNAGKFILQNLPSQNDISRWEILLAYKFDEEEC 672 (809)
Q Consensus 593 N~I~p~dli~~ygaD~lR~~ll~~~~~~d~~fs~~~l~~~~~~~~kl~N~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~ 672 (809)
|+|+|.+++++||+|++|||++++++++|++||++.+..+++++++|+|+++|+++++.++.+... ...
T Consensus 637 NvIdP~~ii~~yGaD~lRl~lls~~~~~D~~fs~~~l~~~~~~~~kL~N~~rf~l~nl~~~~~~~~-----------~~~ 705 (961)
T PRK13804 637 NTVSPQDVIKQSGADILRLWVASVDYSDDQRIGKEILKQVSETYRKLRNTLRWLLGNLAHFDPGED-----------VVA 705 (961)
T ss_pred CcCCHHHHHHhcCHHHHHHHHHhCCCCCCcccCHHHHHHHHHHHHHHHHHHHHHHhccccCCcccc-----------cCC
Confidence 999999999999999999999987779999999999999999999999999999988765433100 001
Q ss_pred hcCCCchhHHHHHHHHHHHHHHHHHhhcCChHHHHHHHHHHHHHhhHHHHHHHhhhhhhcCC-CcHHHHHHHHHHHHHHH
Q 003578 673 LCKAPLPECWVVSKLHMLIDTVTASYDKYFFGDVGRETYDFFWSDFADWYIEASKARLYRSE-YDSDAIIAQAVLLYIFE 751 (809)
Q Consensus 673 ~~~l~~~d~~il~~l~~~~~~v~~a~e~~~f~~a~~~i~~f~~~~~~n~Yi~~~k~~l~~~~-~~~~~~~~~~~l~~vl~ 751 (809)
...+...|+|++++++++++++.++|++|+|++|++.+++|+++++||+|++..|+|++++. +...+++++.+|+.+++
T Consensus 706 ~~~~~~~D~wil~~l~~~~~~v~~~~e~y~f~~a~~~l~~f~~~~lsn~Yle~~K~rl~~~~~~~~~r~~~~~vL~~il~ 785 (961)
T PRK13804 706 YADLPELERYMLHRLNELDGLVREAYDAYDFKRIYKALVNFVNVDLSAFYFDIRKDALYCDAPSSLRRRAAQTVFYEIFV 785 (961)
T ss_pred hhhcCHHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHHHHhhHhhhcCCCCcHHHHHHHHHHHHHHH
Confidence 12455679999999999999999999999999999999999988999999999999999864 33466778999999999
Q ss_pred HHHHHhccchhHHHHHHHHHhcc-CCCceEecCCCCCCC-cCCHHHHHHHHHHHHH
Q 003578 752 NILKLLHPFMPFVTEELWQSLRK-RKEALIVSPWPQTSL-PRHMSAIKRFENLQSL 805 (809)
Q Consensus 752 ~l~~lL~P~~P~~aeeiw~~L~~-~~~sv~~~~wP~~~~-~~d~~~~~~~~~~~~~ 805 (809)
.+++||+|||||+|||||++|++ ..+||+.+.||..+. ..|++++..|+.++++
T Consensus 786 ~l~~lLaPi~P~~aEeiw~~L~~~~~~sv~l~~wP~~~~~~~d~~~~~~~~~~~~~ 841 (961)
T PRK13804 786 RLTKWLAPILPFTAEEAWLYRYPEEEVSVHLEQFPETPAFWRDDALAEKWRKFRAV 841 (961)
T ss_pred HHHHHHHhhhhhhHHHHHHhcccCCCCceEecCCCCCcchhCCHHHHHHHHHHHHH
Confidence 99999999999999999999984 346999999999885 6788888887666653
No 14
>PRK05743 ileS isoleucyl-tRNA synthetase; Reviewed
Probab=100.00 E-value=5.5e-158 Score=1429.70 Aligned_cols=730 Identities=31% Similarity=0.524 Sum_probs=656.8
Q ss_pred ccCCCCCCCCC-----CCh-hhHHHHHHHHHhcCCCCCCCC--CCCCCEEEeCCCCCCCCCCcchhhHHHHHHHHHHHHH
Q 003578 52 AENNKDTLPKT-----FDF-TSEERIYNWWESQGYFKPNFE--RGSDPFVISMPPPNVTGSLHMGHAMFVTLEDIMVRYH 123 (809)
Q Consensus 52 ~~~~~~~~~~~-----~~~-~~E~~~~~~W~~~~~f~~~~~--~~~~~f~i~~~pPy~nG~lHiGH~~~~~~~Di~~Ry~ 123 (809)
+++++..||++ +++ ++|++||++|+++++|++..+ .++++|+|++||||+||.|||||++|++++|+++||+
T Consensus 3 ~y~~tl~lp~t~f~m~~~l~~~E~~~~~~W~~~~~~~~~~~~~~~~~~f~i~~~pPyanG~lHiGHa~~~~~~Dii~Ry~ 82 (912)
T PRK05743 3 DYKDTLNLPKTDFPMRANLPKREPEILKRWEENDLYQKIREANKGKPKFILHDGPPYANGDIHIGHALNKILKDIIVKSK 82 (912)
T ss_pred ChHhhcCCCCCCCCCCCChHHhhHHHHHHHHHCCCccccchhcCCCCcEEEeCCCCCCCCCccHHHHHHHHHHHHHHHHH
Confidence 67888888865 555 789999999999999997543 4577899999999999999999999999999999999
Q ss_pred HHCCCcccccCCCCCCCCchHHHHHHHHHHcCCCccccCHHHHHHHHHHHHHHHHHHHHHHHHHhcccccCCCccccCCh
Q 003578 124 RMKGRPTLWLPGTDHAGIATQLVVEKMLAAEGIKRVELSRDEFTKRVWEWKEKYGGTITSQIKRLGASCDWTRERFTLDE 203 (809)
Q Consensus 124 rm~G~~V~~~~G~D~~Gl~~~~~~e~~~~~~g~~~~~~~~~~f~~~~~~~~~~~~~~~~~~l~~lgi~~Dw~~~~~T~d~ 203 (809)
||+|++|+|++||||||+|||.++++.+ |.+..++++++|++.|++|++++++.|++||++||+++||+++|+|+||
T Consensus 83 rm~G~~v~~~~G~D~~Glpie~~~ek~l---~~~~~~~~~~~f~~~c~~~~~~~~~~~~~~~~~lG~~~dw~~~~~T~~~ 159 (912)
T PRK05743 83 TMSGFDAPYVPGWDCHGLPIELKVEKKL---GKKGKKLSAAEFRKKCREYALEQVDIQREDFKRLGVLGDWDNPYLTMDF 159 (912)
T ss_pred HccCCcccCCCCcCCCccHhHHHHHHHc---CCccccCCHHHHHHHHHHHHHHHHHHHHHHHHHhCCcccCCCCcCCCCH
Confidence 9999999999999999999999998754 5666789999999999999999999999999999999999999999999
Q ss_pred hhHHHHHHHHHHHHHcCceeecCcccccCCCCCcccCccccccccCCCceEEEEEEecCC-------CeeEEEEecCCcc
Q 003578 204 QLSRAVVEAFIRLHEKGLIYQGSYMVNWSPNLQTAVSDLEVEYSEEPGTLYYIKYRVAGR-------SDFLTIATTRPET 276 (809)
Q Consensus 204 ~~~~~v~~~f~~L~~~Gliy~~~~~v~w~p~~~t~lsd~Ev~~~~~~~~~~~~~f~~~~~-------~~~l~v~Tt~pet 276 (809)
.|.++|+++|.+|+++|+||++.++|+|||.|+|+|||+||+|.+..++++||+|++.+. +.+++||||||||
T Consensus 160 ~~~~~v~~~f~~l~~~Gliy~~~~~v~w~p~~~TaLad~Evey~~~~s~~~yv~f~l~~~~~~~~~~~~~l~i~TTrP~T 239 (912)
T PRK05743 160 KYEANIIRALGKMAKKGYLYKGLKPVYWCPDCGSALAEAEVEYHDKTSPSIYVAFPVVDGKLAAAFKDASLVIWTTTPWT 239 (912)
T ss_pred HHHHHHHHHHHHHHHCCCEEecceeEecCCCcCCCchhhHhhcccccCceEEEEEEecCcchhcccCCCEEEEEeCCChh
Confidence 999999999999999999999999999999999999999999999999999999999763 3799999999999
Q ss_pred ccCCcEEEECCCCc---------hh---------------------------hhcccCeeecCCCCCCeeeEEecCCccc
Q 003578 277 LFGDVALAVNPQDE---------HY---------------------------SQFIGMMAIVPMTYGRHVPIISDKYVDK 320 (809)
Q Consensus 277 l~~~~av~v~p~~~---------~y---------------------------~~l~g~~~~~P~~~~~~vpi~~~~~V~~ 320 (809)
|+||+||||||+++ +| .+|+|+++.||+ .++++||++++||++
T Consensus 240 l~~n~aiav~p~~~Y~~~~~~~~~~i~a~~~~~~~~~~~~~~~~~~~~~~~G~~l~g~~~~~Pl-~~~~~pvi~~~~V~~ 318 (912)
T PRK05743 240 LPANQAIAVHPEFDYVLVEVEGEKLIVAKDLVESVLERFGWEDYEVLATFKGKELEGLVAQHPF-YDRDSPVILGDHVTL 318 (912)
T ss_pred hhhCeEEEECCCCeeEEEEcCCCEEEEeHHhHHHHHHhhCCcceEEEEEechHhhcCCEEECCC-CCCeeeEeCCCccCC
Confidence 99999999999994 55 368999999999 588999999999999
Q ss_pred cCCCCceeecCCCChhhHHHHHHhCCCceeecCCCCcccccccccCCCCHHHHHHHHHHHHHHCCCeeeeecccccCccc
Q 003578 321 EFGTGVLKISPGHDHNDYLLARKLGLPILNVMNKDGTLNEVAGLFRGLDRFEARKKLWSDLEETGLAVKKEPHTLRVPRS 400 (809)
Q Consensus 321 ~~GTG~v~~~P~h~~~D~~~~~~~~l~~~~~~~~~G~~~~~~g~~~G~~~~~a~~~i~~~L~~~g~~~~~~~~~~~~p~c 400 (809)
++|||+||+|||||++||+++++||||+++++|++|++++.+|.|+|+++++|+++|++.|+++|++++.+++.|++|+|
T Consensus 319 ~~GTG~Vh~aPahg~~Dy~~~~~~~L~~~~~vd~~G~~~~~~~~~~Gl~v~ea~~~Ii~~L~~~g~l~~~~~~~h~yp~~ 398 (912)
T PRK05743 319 DAGTGLVHTAPGHGEDDYVVGQKYGLEVLNPVDDDGRYTEEAPLFAGLFVFKANPKIIEKLEEKGALLKEEKITHSYPHC 398 (912)
T ss_pred CCCcCeEEeCCCCCHHHHHHHHHcCCCcccccCCCceEecCCcccCCcCHHHhHHHHHHHHHhCCCeeeeeeeeccCCee
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ccCCCeeEEeeccceeeeccH--HHHHHHHHHhcCCceEecchhHHHHHHHHhcCCceeeeccccccceeeEEEEcCCcc
Q 003578 401 QRGGEVIEPLVSKQWFVTMEP--LAEKALHAVEKGELTIMPERFEKIYNHWLSNIKDWCISRQLWWGHRIPVWYIVGKEE 478 (809)
Q Consensus 401 ~r~~~~i~~~~~~qwfl~~~~--~~~~~~~~~~~~~~~~~P~~~~~~~~~~l~~l~Dw~ISRq~~WG~piP~~~~~~~~~ 478 (809)
||||+|+++++++|||+++++ ++++++++++ +++|+|++.++++.+||++++||||||||+||+|||+|||+. ++
T Consensus 399 wR~~~pvi~r~~~QWFi~~~~~~~k~~~l~~~~--~v~~~P~~~~~r~~~~i~~~~DWcISRQR~WG~PIP~~~~~~-~g 475 (912)
T PRK05743 399 WRTKKPVIFRATPQWFISMDKKGLREQALKAIE--KVKWIPAWGKNRIESMVENRPDWCISRQRTWGVPIPIFYHKE-TG 475 (912)
T ss_pred cCCCCEEEEEecCcccEeCChHHHHHHHHHHHc--ccEEEChHHHHHHHHHHhcCcCccccccceeCceEEEEEECC-CC
Confidence 999999999999999999998 9999999997 599999999999999999999999999999999999999965 23
Q ss_pred cEEEcCChhH----HHHHHhh----------hcC-CCccccccCCccceeecccCccceecCCCCCChhhhhhcCCCcEE
Q 003578 479 EYIVARNADE----ALEKAHQ----------KYG-KNVEIYQDPDVLDTWFSSALWPFSTLGWPDVSADDFKKFYPTTML 543 (809)
Q Consensus 479 ~~~~~~~~~~----~~~~~~~----------~~~-~~~~~~~~~dvld~Wfds~~~~~~~~~~~~~~~~~~~~~~p~d~~ 543 (809)
..++..+.-. ..++... -++ ++..+.|++||||||||||+++++.+++- . +.+||+|+|
T Consensus 476 ~~~~~~~~~~~i~~~~~~~g~~~W~~~~~~~~~~~~~~~~~~~~DvlDvWfdSg~s~~~~~~~~----~--~~~~P~Dl~ 549 (912)
T PRK05743 476 ELHPTPELIEHVAKLFEKEGIDAWFELDAKELLPDEADEYEKETDILDVWFDSGSSHAAVLEQR----P--ELGYPADLY 549 (912)
T ss_pred cEeecHHHHHHHHHHHHhhCCccccccCHHHhcCCcccCEEECCchhhhhhhhCCCHHHHhcCc----c--ccCCCceEE
Confidence 3433222111 1111100 011 23468999999999999999998877631 1 268999999
Q ss_pred EeeehhHHhHHHHHHHHHHHhcCCCCceeEEEeeeEEccCCCcccccccCccChhhHHHhhCCchHHHHHhhCCCCCccc
Q 003578 544 ETGHDILFFWVARMVMMGIEFTGSVPFSHVYLHGLIRDSQGRKMSKTLGNVIDPIDTIKEFGADALRFTISLGTAGQDLS 623 (809)
Q Consensus 544 ~~G~Di~~~w~~~~~~~~~~l~~~~Pf~~v~~hg~vld~~G~KMSKS~GN~I~p~dli~~ygaD~lR~~ll~~~~~~d~~ 623 (809)
++|+||+|||++++++.+.++.|..||++|++|||++|.+|+|||||+||+|+|.+++++||+|++|||++++++++|++
T Consensus 550 ~~G~Di~r~Wf~~~l~~~~~~~g~~P~k~vl~HG~vld~~G~KMSKSlGNvIdP~~ii~~yGaDalR~~ll~~~~~~D~~ 629 (912)
T PRK05743 550 LEGSDQHRGWFQSSLLTSVATRGKAPYKQVLTHGFTVDGKGRKMSKSLGNVIDPQDVIKKYGADILRLWVASTDYSGDVR 629 (912)
T ss_pred EecccccchHHHHHHHHHHHhcCCCccceeEEeeeEECCCCCCCCCCCCCcCCHHHHHHhcChHHHHHHHHhcCCCCCee
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999877799999
Q ss_pred ccHHHHHHHHHHHHHHHHHHHHHHHhCCCCCchhhHHHHhhhccchhhhhcCCCchhHHHHHHHHHHHHHHHHHhhcCCh
Q 003578 624 LSIERLTANKAFTNKLWNAGKFILQNLPSQNDISRWEILLAYKFDEEECLCKAPLPECWVVSKLHMLIDTVTASYDKYFF 703 (809)
Q Consensus 624 fs~~~l~~~~~~~~kl~N~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~~d~~il~~l~~~~~~v~~a~e~~~f 703 (809)
||++.+.+.++++++|||+++|+++++.++.+... ..+...+...|+|++++++++++++.++|++|+|
T Consensus 630 ~s~~~l~~~~~~~~kl~N~~rf~~~nl~~~~~~~~-----------~~~~~~l~~~D~~il~~l~~~~~~v~~~~e~~~f 698 (912)
T PRK05743 630 ISDEILKQVAEAYRRIRNTLRFLLGNLNDFDPAKD-----------AVPYEELLELDRWALHRLAELQEEILEAYENYDF 698 (912)
T ss_pred ecHHHHHHHHHHHHHHHHHHHHHHhCccCCCcccc-----------cCCchhCCHHHHHHHHHHHHHHHHHHHHHHhcCH
Confidence 99999999999999999999999988765332000 0011235567999999999999999999999999
Q ss_pred HHHHHHHHHHHHHhhHHHHHHHhhhhhhcCC-CcHHHHHHHHHHHHHHHHHHHHhccchhHHHHHHHHHhc-cCCCceEe
Q 003578 704 GDVGRETYDFFWSDFADWYIEASKARLYRSE-YDSDAIIAQAVLLYIFENILKLLHPFMPFVTEELWQSLR-KRKEALIV 781 (809)
Q Consensus 704 ~~a~~~i~~f~~~~~~n~Yi~~~k~~l~~~~-~~~~~~~~~~~l~~vl~~l~~lL~P~~P~~aeeiw~~L~-~~~~sv~~ 781 (809)
++|++.+++|++++++|+|++..|+|+|+.. +...+++++.+|+.+++.+++||+|||||+|||||++|+ ...+||+.
T Consensus 699 ~~a~~~l~~f~~~~ls~~Yie~~K~rly~~~~~~~~r~~~~~vL~~~l~~l~~lLaPi~P~~aEelw~~l~~~~~~sv~~ 778 (912)
T PRK05743 699 HKVYQKLHNFCSVDLSAFYLDIIKDRLYTDAADSLARRSAQTALYHILEALVRWLAPILSFTAEEIWQYLPGEREESVFL 778 (912)
T ss_pred HHHHHHHHHHhhhhhceeeheeccHhhhcCCCCcHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHhcccCCCCceEE
Confidence 9999999999988999999999999999864 333577788999999999999999999999999999996 34579999
Q ss_pred cCCCCCCC-cCCHHHHHHHHHHHHH
Q 003578 782 SPWPQTSL-PRHMSAIKRFENLQSL 805 (809)
Q Consensus 782 ~~wP~~~~-~~d~~~~~~~~~~~~~ 805 (809)
+.||..++ ..|+++++.++.++++
T Consensus 779 ~~wP~~~~~~~~~~~~~~~~~~~~~ 803 (912)
T PRK05743 779 EEWPEVPELADDEELLAKWEELLEV 803 (912)
T ss_pred ecCCCCccccCCHHHHHHHHHHHHH
Confidence 99999885 6788999999888753
No 15
>PRK13208 valS valyl-tRNA synthetase; Reviewed
Probab=100.00 E-value=3e-155 Score=1400.02 Aligned_cols=725 Identities=33% Similarity=0.614 Sum_probs=661.9
Q ss_pred CCCCCCCCCh-hhHHHHHHHHHhcCCCCCCCCCCCCCEEEeCCCCCCCCCCcchhhHHHHHHHHHHHHHHHCCCcccccC
Q 003578 56 KDTLPKTFDF-TSEERIYNWWESQGYFKPNFERGSDPFVISMPPPNVTGSLHMGHAMFVTLEDIMVRYHRMKGRPTLWLP 134 (809)
Q Consensus 56 ~~~~~~~~~~-~~E~~~~~~W~~~~~f~~~~~~~~~~f~i~~~pPy~nG~lHiGH~~~~~~~Di~~Ry~rm~G~~V~~~~ 134 (809)
..++|+.|++ ++|++||++|+++++|++..+.++++|+|++|||||||.|||||+++++++|+++||+||+|++|+|++
T Consensus 3 ~~~~~~~~~~~~~E~~~~~~W~~~~~f~~~~~~~~~~f~i~~ppPy~nG~lHiGH~~~~~~~D~~~R~~r~~G~~v~~~~ 82 (800)
T PRK13208 3 MPELPKKYDPEELEEKWQKIWEEEGTYKFDPDERKPVYSIDTPPPTVSGSLHIGHVFSYTHTDFIARYQRMRGYNVFFPQ 82 (800)
T ss_pred CCCCCCCCCHHHHHHHHHHHHHHCCCcccccccCCCcEEEecCcCCCCCCccHHHHHhHHHHHHHHHHHHcCCCcccCCC
Confidence 4568889999 899999999999999998766667889999999999999999999999999999999999999999999
Q ss_pred CCCCCCCchHHHHHHHHHHcCCCccccCHHHHHHHHHHHHHHHHHHHHHHHHHhcccccCCCccccCChhhHHHHHHHHH
Q 003578 135 GTDHAGIATQLVVEKMLAAEGIKRVELSRDEFTKRVWEWKEKYGGTITSQIKRLGASCDWTRERFTLDEQLSRAVVEAFI 214 (809)
Q Consensus 135 G~D~~Gl~~~~~~e~~~~~~g~~~~~~~~~~f~~~~~~~~~~~~~~~~~~l~~lgi~~Dw~~~~~T~d~~~~~~v~~~f~ 214 (809)
||||||+|||.++++. .|+++.++++++|++.|++|++++++.|+++|++||+++||+|+|+|+||.|+++|+++|.
T Consensus 83 G~D~~Glpie~~~ek~---~g~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~~lg~s~Dw~~~~~T~d~~~~~~v~~~f~ 159 (800)
T PRK13208 83 GWDDNGLPTERKVEKY---YGIRKDDISREEFIELCRELTDEDEKKFRELWRRLGLSVDWSLEYQTISPEYRRISQKSFL 159 (800)
T ss_pred CcCCCcchHHHHHHHH---hCCCcccCCHHHHHHHHHHHHHHHHHHHHHHHHHhCeeeccCCCcccCCHHHHHHHHHHHH
Confidence 9999999998887763 3899999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHcCceeecCcccccCCCCCcccCccccccccCCCceEEEEEEecCCCeeEEEEecCCccccCCcEEEECCCCchhhh
Q 003578 215 RLHEKGLIYQGSYMVNWSPNLQTAVSDLEVEYSEEPGTLYYIKYRVAGRSDFLTIATTRPETLFGDVALAVNPQDEHYSQ 294 (809)
Q Consensus 215 ~L~~~Gliy~~~~~v~w~p~~~t~lsd~Ev~~~~~~~~~~~~~f~~~~~~~~l~v~Tt~petl~~~~av~v~p~~~~y~~ 294 (809)
+|+++|+||++.++|+|||.|+|+|||+||+|++..++++||+|++.+ +.+++|||||||||+|++||||||++++|++
T Consensus 160 ~L~~~Gliy~~~~~v~wcp~~~t~Lsd~ev~~~~~~~~~~~ikf~~~~-~~~l~v~TtrPeTl~g~~ai~v~p~~~~~~~ 238 (800)
T PRK13208 160 DLYKKGLIYRAEAPVLWCPRCETAIAQAEVEYREREGKLNYIKFPVED-GEEIEIATTRPELLPACVAVVVHPDDERYKH 238 (800)
T ss_pred HHHHCCCeeecCcccccCCCCCCccchhhhccccccceEEEEEEEecC-CCEEEEEeCCcchhhhCeEEEECCCchHHHH
Confidence 999999999999999999999999999999999999999999999985 4699999999999999999999999999999
Q ss_pred cccCeeecCCCCCCeeeEEecCCccccCCCCceeecCCCChhhHHHHHHhCCCceeecCCCCcccccccccCCCCHHHHH
Q 003578 295 FIGMMAIVPMTYGRHVPIISDKYVDKEFGTGVLKISPGHDHNDYLLARKLGLPILNVMNKDGTLNEVAGLFRGLDRFEAR 374 (809)
Q Consensus 295 l~g~~~~~P~~~~~~vpi~~~~~V~~~~GTG~v~~~P~h~~~D~~~~~~~~l~~~~~~~~~G~~~~~~g~~~G~~~~~a~ 374 (809)
|+|+++.+|+ .++++||++++||++++|||+||+||+||++||++++++|||+++++|++|.+++++|.|+|+++++||
T Consensus 239 l~g~~~~~P~-~~~~ipii~~~~V~~~~GTG~V~~~p~hd~~D~~~~~~~~l~~~~~i~~~G~~~~~~g~~~G~~~~~a~ 317 (800)
T PRK13208 239 LVGKTAIVPL-FGVEVPILADPLVDPDFGTGAVMICTFGDKTDVTWWRELNLPTRIIIDEDGRMTEAAGKLAGLTIEEAR 317 (800)
T ss_pred hcCCEEEcCC-CCCcceEECCCccCCCCCcceEEeCCCCCHHHHHHHHHcCCCcccccCCCceEecCCcccCCCCHHHHH
Confidence 9999999999 589999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHCCCeeeeecccccCcccccCCCeeEEeeccceeeeccHHHHHHHHHHhcCCceEecchhHHHHHHHHhcCC
Q 003578 375 KKLWSDLEETGLAVKKEPHTLRVPRSQRGGEVIEPLVSKQWFVTMEPLAEKALHAVEKGELTIMPERFEKIYNHWLSNIK 454 (809)
Q Consensus 375 ~~i~~~L~~~g~~~~~~~~~~~~p~c~r~~~~i~~~~~~qwfl~~~~~~~~~~~~~~~~~~~~~P~~~~~~~~~~l~~l~ 454 (809)
++|++.|+++|++.+.+++.|++|+|||||+++++++++||||++++++++++++++ +++|+|+..++++.+||++++
T Consensus 318 ~~i~~~L~~~g~~~~~~~~~~~~p~~~r~~~~v~~~~~~qwfl~~~~~~~~~~~~~~--~~~~~P~~~~~~~~~~l~~~~ 395 (800)
T PRK13208 318 KKIVEDLKSGGLLGKQEPIKHNVKFCERCDTPLEILVTRQWFIKVLDLKEELLERGK--EINWYPEHMRVRLENWIEGLN 395 (800)
T ss_pred HHHHHHHHhCCCeeceeeeeccCCccCCCCCEEEEeccceeeEeCHHHHHHHHHhhc--CcEEECHHHHHHHHHHHHhcC
Confidence 999999999999999999999999999999999999999999999999999999996 589999999999999999988
Q ss_pred -ceeeeccccccceeeEEEEcCCcccEEEcCChhHH----HHH-----HhhhcCCCccccccCCccceeecccCccceec
Q 003578 455 -DWCISRQLWWGHRIPVWYIVGKEEEYIVARNADEA----LEK-----AHQKYGKNVEIYQDPDVLDTWFSSALWPFSTL 524 (809)
Q Consensus 455 -Dw~ISRq~~WG~piP~~~~~~~~~~~~~~~~~~~~----~~~-----~~~~~~~~~~~~~~~dvld~Wfds~~~~~~~~ 524 (809)
||||||||+||+|||+|+|.++ +..+++. ..+. ... ....||. ..+.|++|||||||||+++|++.+
T Consensus 396 ~DW~ISRqr~WG~pIP~~~~~~~-g~~~~~~-~~~l~~~~~~d~~~~~~~~~~g~-~~~~~~~dvlD~WfdS~~~~~~~~ 472 (800)
T PRK13208 396 WDWCISRQRYFGTPIPVWYCKDC-GHPILPD-EEDLPVDPTKDEPPGYKCPQCGS-PGFEGETDVMDTWATSSITPLIVT 472 (800)
T ss_pred CCceeeeccccCCcceEEEeCCC-CCeecCc-hhhhccCchhhccccccccccCC-cCEEecCCEEEEEEeCCchHHHHh
Confidence 9999999999999999999753 3333321 1111 000 1112232 358899999999999999999999
Q ss_pred CCCCCChhhhhhcCCCcEEEeeehhHHhHHHHHHHHHHHhcCCCCceeEEEeeeEEccCCCcccccccCccChhhHHHhh
Q 003578 525 GWPDVSADDFKKFYPTTMLETGHDILFFWVARMVMMGIEFTGSVPFSHVYLHGLIRDSQGRKMSKTLGNVIDPIDTIKEF 604 (809)
Q Consensus 525 ~~~~~~~~~~~~~~p~d~~~~G~Di~~~w~~~~~~~~~~l~~~~Pf~~v~~hg~vld~~G~KMSKS~GN~I~p~dli~~y 604 (809)
+||.+. .+|++|||+|++++|+||++||++++++++.++.++.||+++++||++++.+|+|||||+||+|+|.+++++|
T Consensus 473 ~~~~~~-~~~~~~~P~d~~~~G~Di~~~w~~~~l~~~~~~~~~~Pf~~v~~hg~v~~~~G~KMSKS~GN~i~p~~~i~~y 551 (800)
T PRK13208 473 GWERDE-DLFEKVFPMDLRPQGHDIIRTWLFYTILRAYLLTGKLPWKNIMISGMVLDPDGKKMSKSKGNVVTPEELLEKY 551 (800)
T ss_pred CCCCCh-hhhhhcCCceEEEeecchhhhHHHHHHHHHHHhcCCCCcceEEEeeEEECCCCCCCCCCCCCCCCHHHHHHHc
Confidence 999765 6799999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCchHHHHHhhCCCCCcccccHHHHHHHHHHHHHHHHHHHHHHHhCCCCCchhhHHHHhhhccchhhhhcCCCchhHHHH
Q 003578 605 GADALRFTISLGTAGQDLSLSIERLTANKAFTNKLWNAGKFILQNLPSQNDISRWEILLAYKFDEEECLCKAPLPECWVV 684 (809)
Q Consensus 605 gaD~lR~~ll~~~~~~d~~fs~~~l~~~~~~~~kl~N~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~~d~~il 684 (809)
|+|++||||+.+++++|++|+++.+..+++++++|||+++++.. ..+... ......+...|+|++
T Consensus 552 g~D~lR~~l~~~~~~~d~~fs~~~~~~~~~~l~kl~N~~r~~~~-~~~~~~--------------~~~~~~~~~~D~~il 616 (800)
T PRK13208 552 GADAVRYWAASARLGSDTPFDEKQVKIGRRLLTKLWNASRFVLH-FSADPE--------------PDKAEVLEPLDRWIL 616 (800)
T ss_pred CccHHHHHHhcCCCCCCceecHHHHHHHHHHHHHHHHHHHHHHh-cccccc--------------cCccccCCHHHHHHH
Confidence 99999999996666999999999999999999999999988763 221100 000123456799999
Q ss_pred HHHHHHHHHHHHHhhcCChHHHHHHHHHHHHHhhHHHHHHHhhhhhhcCCCcHHHHHHHHHHHHHHHHHHHHhccchhHH
Q 003578 685 SKLHMLIDTVTASYDKYFFGDVGRETYDFFWSDFADWYIEASKARLYRSEYDSDAIIAQAVLLYIFENILKLLHPFMPFV 764 (809)
Q Consensus 685 ~~l~~~~~~v~~a~e~~~f~~a~~~i~~f~~~~~~n~Yi~~~k~~l~~~~~~~~~~~~~~~l~~vl~~l~~lL~P~~P~~ 764 (809)
++++.+++++.++|++|+|++|++.+++|+++++||+||+.+|+|++.++..+.+.+++.+++.+++.+++||+|||||+
T Consensus 617 ~~l~~~i~~v~~~~e~~~f~~A~~~i~~f~~~~~~n~Yie~~k~~~~~~~~~~~~~~~~~~l~~~l~~l~~LLaPf~P~i 696 (800)
T PRK13208 617 AKLAKVVEKATEALENYDFAKALEEIESFFWHVFCDDYLELVKSRAYGEDEEEEQKSARYTLYTVLDTLLRLLAPFLPFI 696 (800)
T ss_pred HHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHhhHHHHHHhhHHhcCCCCcHHHHHHHHHHHHHHHHHHHHhcccchhh
Confidence 99999999999999999999999999999988899999999999998754333366788899999999999999999999
Q ss_pred HHHHHHHhccCCCceEecCCCCCCC-cCCHHHHHHHHHHHHHHhh
Q 003578 765 TEELWQSLRKRKEALIVSPWPQTSL-PRHMSAIKRFENLQSLVIL 808 (809)
Q Consensus 765 aeeiw~~L~~~~~sv~~~~wP~~~~-~~d~~~~~~~~~~~~~~~~ 808 (809)
||+||++|+ .+||+.++||+.+. ..+++++..++.+++++..
T Consensus 697 aEelw~~L~--~~si~~~~wP~~~~~~~~~~~~~~~~~v~~ii~~ 739 (800)
T PRK13208 697 TEEVWSWLY--GGSVHRASWPEPDEELIDEEDEELGELAKEILSA 739 (800)
T ss_pred HHHHHHhCC--CCceEeccCCCCCcccccHHHHHHHHHHHHHHHH
Confidence 999999998 35999999999985 6788899999999888765
No 16
>PLN02843 isoleucyl-tRNA synthetase
Probab=100.00 E-value=3.7e-155 Score=1406.42 Aligned_cols=719 Identities=28% Similarity=0.481 Sum_probs=637.0
Q ss_pred Ch-hhHHHHHHHHHhcCCCCCCCCC-CCCCEEEeCCCCCCCCCCcchhhHHHHHHHHHHHHHHHCCCcccccCCCCCCCC
Q 003578 64 DF-TSEERIYNWWESQGYFKPNFER-GSDPFVISMPPPNVTGSLHMGHAMFVTLEDIMVRYHRMKGRPTLWLPGTDHAGI 141 (809)
Q Consensus 64 ~~-~~E~~~~~~W~~~~~f~~~~~~-~~~~f~i~~~pPy~nG~lHiGH~~~~~~~Di~~Ry~rm~G~~V~~~~G~D~~Gl 141 (809)
++ ++|++||++|+++++|++..+. .+++|+|++|||||||.||||||+|++++|+++||+||+||+|+|++|||||||
T Consensus 4 ~~~~~E~~~~~~W~~~~~y~~~~~~~~~~~f~i~~~PPy~nG~lHiGHa~~~~lkDii~Ry~rm~G~~v~~~pG~D~hGl 83 (974)
T PLN02843 4 NSVTREPEIQKLWEENQVYKRVSDRNNGESFTLHDGPPYANGDLHIGHALNKILKDFINRYQLLQGKKVHYVPGWDCHGL 83 (974)
T ss_pred ChHHhhHHHHHHHHHCCCccccccccCCCCEEEeCCCCCCCCCcchhHHHHHHHHHHHHHHHHhcCCccccCCccCCCCc
Confidence 44 7899999999999999987542 357799999999999999999999999999999999999999999999999999
Q ss_pred chHHHHHHHHHHcCCCccccCHHHHHHHHHHHHHHHHHHHHHHHHHhcccccCCCccccCChhhHHHHHHHHHHHHHcCc
Q 003578 142 ATQLVVEKMLAAEGIKRVELSRDEFTKRVWEWKEKYGGTITSQIKRLGASCDWTRERFTLDEQLSRAVVEAFIRLHEKGL 221 (809)
Q Consensus 142 ~~~~~~e~~~~~~g~~~~~~~~~~f~~~~~~~~~~~~~~~~~~l~~lgi~~Dw~~~~~T~d~~~~~~v~~~f~~L~~~Gl 221 (809)
|||.++++.+.+ .+..++++++|+++|++|++++++.|++||++||++.||+++|+|+||.|.++++++|.+|+++|+
T Consensus 84 pie~~vek~l~~--~~~~~~~~~~f~~~c~~~~~~~~~~~~~~~~~lG~~~Dw~~~y~T~d~~~~~~v~~~f~~l~~~Gl 161 (974)
T PLN02843 84 PIELKVLQSLDQ--EARKELTPIKLRAKAAKFAKKTVDTQRESFKRYGVWGDWENPYLTLDPEYEAAQIEVFGQMFLNGY 161 (974)
T ss_pred HHHHHHHHHhch--hhhccCCHHHHHHHHHHHHHHHHHHHHHHHHHhCCceecCCCCccCCHHHHHHHHHHHHHHHHCCC
Confidence 999999887632 255678999999999999999999999999999999999999999999999999999999999999
Q ss_pred eeecCcccccCCCCCcccCcccccccc-CCCceEEEEEEecCC-------------CeeEEEEecCCccccCCcEEEECC
Q 003578 222 IYQGSYMVNWSPNLQTAVSDLEVEYSE-EPGTLYYIKYRVAGR-------------SDFLTIATTRPETLFGDVALAVNP 287 (809)
Q Consensus 222 iy~~~~~v~w~p~~~t~lsd~Ev~~~~-~~~~~~~~~f~~~~~-------------~~~l~v~Tt~petl~~~~av~v~p 287 (809)
||++.++|+|||.|+|+|||+||+|.+ ..++++||+|++.+. +.+++|||||||||+||+||||||
T Consensus 162 Iyr~~kpV~Wcp~~~Talae~Evey~e~~~~~s~yv~f~~~~~~~~~~~~~~~~~~~~~lviwTTtPwTlpan~AiaVnP 241 (974)
T PLN02843 162 IYRGRKPVHWSPSSRTALAEAELEYPEGHVSKSIYVAFPVVSPSETSPEELEEFLPGLSLAIWTTTPWTMPANAAVAVND 241 (974)
T ss_pred EEecceeeeecCCCCCcchHhHhcccCCccCceEEEEEEecCCccccccccccccccceEEEEeCcchhhccCcEEEECC
Confidence 999999999999999999999999997 579999999999753 148999999999999999999999
Q ss_pred CCc-------------h-----------------------------------------------hhhcccCeeecCCCCC
Q 003578 288 QDE-------------H-----------------------------------------------YSQFIGMMAIVPMTYG 307 (809)
Q Consensus 288 ~~~-------------~-----------------------------------------------y~~l~g~~~~~P~~~~ 307 (809)
+++ | +++|+|+++.||+ .+
T Consensus 242 ~~~Y~~v~~~~~~~d~r~~~~~~~~~~~~~~~~~~~~~~iva~~l~~~~~~~~~~~~~~~~~~~g~~L~g~~~~~P~-~~ 320 (974)
T PLN02843 242 KLQYSVVEVQSFSEDESTSGGNKKKRPGNVLKEQQKLFLIVATDLVPALEAKWGVKLVVLKTFPGSDLEGCRYIHPL-YN 320 (974)
T ss_pred CCceEEEEeccccccccccccccccccccccccccCceEEeHHHHHHHHHHhhCCceEEEeeechHHcCCCEEECCC-CC
Confidence 955 1 1578999999999 57
Q ss_pred CeeeEEe-cCCccccCCCCceeecCCCChhhHHHHHHhCCCceeecCCCCcccccccccCCCCHH-HHHHHHHHHHHHCC
Q 003578 308 RHVPIIS-DKYVDKEFGTGVLKISPGHDHNDYLLARKLGLPILNVMNKDGTLNEVAGLFRGLDRF-EARKKLWSDLEETG 385 (809)
Q Consensus 308 ~~vpi~~-~~~V~~~~GTG~v~~~P~h~~~D~~~~~~~~l~~~~~~~~~G~~~~~~g~~~G~~~~-~a~~~i~~~L~~~g 385 (809)
+++||+. ++||++++|||+||+|||||++||+++++||||+++++|++|++++++|.|+|+.++ +||++|++.|+++|
T Consensus 321 ~~~pii~~~~~V~~~~GTG~Vh~aPaHg~~Dy~~~~~~~l~~~~~vd~~G~~~~~~~~~~G~~v~~~a~~~Ii~~L~~~g 400 (974)
T PLN02843 321 RESPVVIGGDYITTESGTGLVHTAPGHGQEDYITGLKYGLPLLSPVDDAGKFTEEAGQFSGLSVLGEGNAAVVEALDEAG 400 (974)
T ss_pred CceeEEecCCccCCCCCCCeEEeCCCCCHHHHHHHHHcCCCcccccCCCceEccCCcccCCcEehhcchHHHHHHHHHCC
Confidence 8999975 899999999999999999999999999999999999999999999999999999998 89999999999999
Q ss_pred CeeeeecccccCcccccCCCeeEEeeccceeeeccHHHHHHHHHHhcCCceEecchhHHHHHHHHhcCCceeeecccccc
Q 003578 386 LAVKKEPHTLRVPRSQRGGEVIEPLVSKQWFVTMEPLAEKALHAVEKGELTIMPERFEKIYNHWLSNIKDWCISRQLWWG 465 (809)
Q Consensus 386 ~~~~~~~~~~~~p~c~r~~~~i~~~~~~qwfl~~~~~~~~~~~~~~~~~~~~~P~~~~~~~~~~l~~l~Dw~ISRq~~WG 465 (809)
++++.+++.|++||||||++||++|+++|||+++++++++++++++ +++|+|+..++++.+||++++||||||||+||
T Consensus 401 ~l~~~e~~~H~yp~cwR~~~pvi~r~t~QWFi~~~~~k~~al~~~~--~v~~~P~~~~~r~~~~i~~~~DWcISRQr~WG 478 (974)
T PLN02843 401 SLLMEEAYGHKYPYDWRTKKPTIFRATEQWFASVEGFRQAALDAID--KVKWIPAQGENRIRAMVSGRSDWCISRQRTWG 478 (974)
T ss_pred CeeeeeeecCCCCccCCCCCeEEEEecCceeEeCHHHHHHHHHHHh--ccEEEChHHHHHHHHHHhcCcceeeeeccccc
Confidence 9999999999999999999999999999999999999999999997 69999999999999999999999999999999
Q ss_pred ceeeEEEEcCCcccEEEcCChhHH---HHHH--------------hhhc-CCCccccccCCccceeecccCccceecCCC
Q 003578 466 HRIPVWYIVGKEEEYIVARNADEA---LEKA--------------HQKY-GKNVEIYQDPDVLDTWFSSALWPFSTLGWP 527 (809)
Q Consensus 466 ~piP~~~~~~~~~~~~~~~~~~~~---~~~~--------------~~~~-~~~~~~~~~~dvld~Wfds~~~~~~~~~~~ 527 (809)
+|||+|+|..+++.++........ .+.. .+.+ ++...+.|++||||||||||+++....++
T Consensus 479 ~pIP~~~~~~~~~~~~~~~~i~~~~~~~~~~g~~~w~~~~~~~l~p~~~~~~~~~~~k~~DvlDvWFdSg~~~~~~~~~- 557 (974)
T PLN02843 479 VPIPVFYHVETKEPLMNEETIAHVKSIVAQKGSDAWWYMDVEDLLPEKYRDKASDYEKGTDTMDVWFDSGSSWAGVLGS- 557 (974)
T ss_pred cEEEEEEEcCCCCEeechhhHHHHHHHHHhhCCcccccCCHHHhCcccccCchhhhEecccccccchhcCCChHHHhcc-
Confidence 999999996422222222222111 1111 1111 12345889999999999999977654432
Q ss_pred CCChhhhhhcCCCcEEEeeehhHHhHHHHHHHHHHHhcCCCCceeEEEeeeEEccCCCcccccccCccChhhHHH-----
Q 003578 528 DVSADDFKKFYPTTMLETGHDILFFWVARMVMMGIEFTGSVPFSHVYLHGLIRDSQGRKMSKTLGNVIDPIDTIK----- 602 (809)
Q Consensus 528 ~~~~~~~~~~~p~d~~~~G~Di~~~w~~~~~~~~~~l~~~~Pf~~v~~hg~vld~~G~KMSKS~GN~I~p~dli~----- 602 (809)
..+.+||+|++++|+||+|||++++++.+.+++|+.||+++++||+++|.+|+|||||+||+|+|.++++
T Consensus 558 -----~~~~~~PaDl~~eG~Di~rgWf~s~l~~~~~~~g~~Pfk~v~~HG~vld~~G~KMSKSlGNvI~p~~vi~~~~~~ 632 (974)
T PLN02843 558 -----REGLSYPADLYLEGSDQHRGWFQSSLLTSVATKGKAPYKSVLTHGFVLDEKGFKMSKSLGNVVDPRLVIEGGKNQ 632 (974)
T ss_pred -----ccccCCCceeeeeeccccchHHHHHHHHHHHhcCCCccceEEEeccEECCCCCCcCCCCCCcCCHHHHHhhcccc
Confidence 1234799999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ----hhCCchHHHHHhhCCCCCcccccHHHHHHHHHHHHHHHHHHHHHHHhCCCCCchhhHHHHhhhccchhhhhcCCCc
Q 003578 603 ----EFGADALRFTISLGTAGQDLSLSIERLTANKAFTNKLWNAGKFILQNLPSQNDISRWEILLAYKFDEEECLCKAPL 678 (809)
Q Consensus 603 ----~ygaD~lR~~ll~~~~~~d~~fs~~~l~~~~~~~~kl~N~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~ 678 (809)
+||+|+||||+++.++++|++|+.+.++..++++++|||+++|+++|+.++.+ .. ..+...+..
T Consensus 633 ~~~~~yGaD~lR~~l~~~~~~~d~~~s~~~l~~~~~~~~kl~n~~rf~lgnl~~~~~-~~-----------~~~~~~~~~ 700 (974)
T PLN02843 633 KQEPAYGADVLRLWVASVDYTGDVLIGPQILKQMSDIYRKLRGTLRYLLGNLHDWKP-DN-----------AVPYEDLPS 700 (974)
T ss_pred ccccccChHHHHHHHHhcccCCCceeCHHHHHHHHHHHHHHHHHHHHHHhCccCCCc-cc-----------ccCccccCH
Confidence 79999999999998889999999999999999999999999999998865432 00 011123456
Q ss_pred hhHHHHHHHHHHHHHHHHHhhcCChHHHHHHHHHHHHHhhHHHHHHHhhhhhhcCC-CcHHHHHHHHHHHHHHHHHHHHh
Q 003578 679 PECWVVSKLHMLIDTVTASYDKYFFGDVGRETYDFFWSDFADWYIEASKARLYRSE-YDSDAIIAQAVLLYIFENILKLL 757 (809)
Q Consensus 679 ~d~~il~~l~~~~~~v~~a~e~~~f~~a~~~i~~f~~~~~~n~Yi~~~k~~l~~~~-~~~~~~~~~~~l~~vl~~l~~lL 757 (809)
.|+|++++++++++++.++|++|+|++|++.+++|++.++||+||+..|+|++.++ +...+++++++|+.+++.+++||
T Consensus 701 ~D~wiLskL~~li~~v~~aye~y~f~~A~~~i~~f~~~dlsn~Yie~~Kprly~~~~~~~~r~~~qtvL~~iLe~l~~LL 780 (974)
T PLN02843 701 IDKYALFQLENVVNEIEESYDNYQFFKIFQILQRFTIVDLSNFYLDVAKDRLYVGGTTSFTRRSCQTVLAAHLLSLLRAI 780 (974)
T ss_pred HHHHHHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHHHhHHHHHhcchhhhccCCCHHHHHHHHHHHHHHHHHHHHHH
Confidence 79999999999999999999999999999999999988999999999999999864 33356778899999999999999
Q ss_pred ccchhHHHHHHHHHhccC-----CCceEecCCCCCCC-cCC--HHHHHHHHHHHHH
Q 003578 758 HPFMPFVTEELWQSLRKR-----KEALIVSPWPQTSL-PRH--MSAIKRFENLQSL 805 (809)
Q Consensus 758 ~P~~P~~aeeiw~~L~~~-----~~sv~~~~wP~~~~-~~d--~~~~~~~~~~~~~ 805 (809)
+|||||+|||||++|+.. .+||+++.||+.++ ..| +..+..++.+.++
T Consensus 781 aPimPf~aEEiw~~L~~~~~~~~~~sv~~~~~P~~~~~~~~~~~~~~~~~~~~~~~ 836 (974)
T PLN02843 781 APILPHLAEDAWQNLPFQEDGSAAESVFEAGWPTPNEEWLSFPAEDVDFWSLLLEV 836 (974)
T ss_pred hhhhhHHHHHHHHhccccccCCCCCceEecCCCCCchhhcCchHHHHHHHHHHHHH
Confidence 999999999999999852 36999999999885 444 4444545555553
No 17
>TIGR00392 ileS isoleucyl-tRNA synthetase. The isoleucyl tRNA synthetase (IleS) is a class I amino acyl-tRNA ligase and is particularly closely related to the valyl tRNA synthetase. This model may recognize IleS from every species, including eukaryotic cytosolic and mitochondrial forms.
Probab=100.00 E-value=2.2e-153 Score=1395.23 Aligned_cols=735 Identities=32% Similarity=0.563 Sum_probs=654.7
Q ss_pred CCCCCCCh-hhHHHHHHHHHhcCCCCCCCC--CCCCCEEEeCCCCCCCCCCcchhhHHHHHHHHHHHHHHHCCCcccccC
Q 003578 58 TLPKTFDF-TSEERIYNWWESQGYFKPNFE--RGSDPFVISMPPPNVTGSLHMGHAMFVTLEDIMVRYHRMKGRPTLWLP 134 (809)
Q Consensus 58 ~~~~~~~~-~~E~~~~~~W~~~~~f~~~~~--~~~~~f~i~~~pPy~nG~lHiGH~~~~~~~Di~~Ry~rm~G~~V~~~~ 134 (809)
++|+.|++ ++|++||++|+++++|++..+ .++++|+|++|||||||.|||||++|++++|+++||+||+||+|+|++
T Consensus 1 ~f~~~~~~~~~E~~~~~~W~~~~~f~~~~~~~~~~~~f~i~~~pPy~nG~lH~GH~~~~~~~D~~~Ry~rm~G~~v~~~~ 80 (861)
T TIGR00392 1 KFPMRGNLSKREEKILAFWQENDIFEKVKKLNKGKPEFIFHDGPPYANGSIHLGHALNKILKDIILRYKTMQGFNVTRKP 80 (861)
T ss_pred CCCCCCChhHhhHHHHHHHHHCCchhhhhhccCCCCCeEEecCCCCCCCCccHHHHHHHHHHHHHHHHHHcCCCccCCCC
Confidence 36788999 899999999999999997653 457889999999999999999999999999999999999999999999
Q ss_pred CCCCCCCchHHHHHHHHHHcCC-CccccCHHHHHHHHHHHHHHHHHHHHHHHHHhcccccCCCccccCChhhHHHHHHHH
Q 003578 135 GTDHAGIATQLVVEKMLAAEGI-KRVELSRDEFTKRVWEWKEKYGGTITSQIKRLGASCDWTRERFTLDEQLSRAVVEAF 213 (809)
Q Consensus 135 G~D~~Gl~~~~~~e~~~~~~g~-~~~~~~~~~f~~~~~~~~~~~~~~~~~~l~~lgi~~Dw~~~~~T~d~~~~~~v~~~f 213 (809)
||||||+|||.++++.+...|. .....++++|+++|++|+.++++.+++||++||+++||+|+|+|+||.|+++++|+|
T Consensus 81 G~D~~Glpie~~~ek~l~~~~~~~~~~~~~~~f~~~c~~~~~~~~~~~~~~~~~lG~~~dw~~~y~T~~p~y~~~~~~~f 160 (861)
T TIGR00392 81 GWDTHGLPIEHKVEKKLGISGKKEISSLEIEEFREKCREFALKQIEEQREQFQRLGVWGDWENPYKTMDPSYEESQWWLF 160 (861)
T ss_pred CcCCCccHHHHHHHHHhCcccccccchhhHHHHHHHHHHHHHHHHHHHHHHHHHhCceecCCCCcCcCCHHHHHHHHHHH
Confidence 9999999999999887633222 223356799999999999999999999999999999999999999999999999999
Q ss_pred HHHHHcCceeecCcccccCCCCCcccCcccccccc----CCCceEEEEEEecCCCe--------eEEEEecCCccccCCc
Q 003578 214 IRLHEKGLIYQGSYMVNWSPNLQTAVSDLEVEYSE----EPGTLYYIKYRVAGRSD--------FLTIATTRPETLFGDV 281 (809)
Q Consensus 214 ~~L~~~Gliy~~~~~v~w~p~~~t~lsd~Ev~~~~----~~~~~~~~~f~~~~~~~--------~l~v~Tt~petl~~~~ 281 (809)
.+|+++|+||++.++|+|||.|+|+|||+||+|.+ ..++++||+|++.+++. +++|||||||||+||+
T Consensus 161 ~~l~~~gliyr~~~~v~w~p~~~T~La~~Ev~~~~~~~~~~~~~~~v~f~~~~~~~~~~~~~~~~l~i~TTrP~Tl~~~~ 240 (861)
T TIGR00392 161 KEAHEKGLLYRGLKPVYWSPRCRTALAEAEVEYKENYKDVKDPSIYVKFPVKKDKKTYLKVKLSSLLIWTTTPWTLPSNL 240 (861)
T ss_pred HHHHHCCCEeecceeeecCCCcCCcccHHHHhcccccccccCceEEEEEEecCCcccccccccceEEEEECCcccccCCe
Confidence 99999999999999999999999999999999887 78999999999976554 8999999999999999
Q ss_pred EEEECCCCc-----------hh--------------------------hhcccCeeecCCCCCCee------eE-EecCC
Q 003578 282 ALAVNPQDE-----------HY--------------------------SQFIGMMAIVPMTYGRHV------PI-ISDKY 317 (809)
Q Consensus 282 av~v~p~~~-----------~y--------------------------~~l~g~~~~~P~~~~~~v------pi-~~~~~ 317 (809)
||||||+++ +| .+|+|+++.||+ .++.+ |+ ++++|
T Consensus 241 ai~v~p~~~Y~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~G~~l~g~~~~~P~-~~~~~~~~~~~p~v~~~~~ 319 (861)
T TIGR00392 241 AIAVHPDFEYALVQDNTKVEYFILAKKLVEKLYNKAGSDYEIIKTFKGSDLEGLEYEHPL-YDFVSQLKEGAPVVIGGDH 319 (861)
T ss_pred eeeeCCCCceEEEEcCCCCcEEEEeHHHHHHHHHhcCCceEEEeeecchhhCCCEEECCC-CccccccccCCcEEeCCCC
Confidence 999999975 33 468999999999 57788 86 56699
Q ss_pred ccccCCCCceeecCCCChhhHHHHHHhCCCceeecCCCCccccccc-------ccCCCCHHHHHHHHHHHHHHCCCeeee
Q 003578 318 VDKEFGTGVLKISPGHDHNDYLLARKLGLPILNVMNKDGTLNEVAG-------LFRGLDRFEARKKLWSDLEETGLAVKK 390 (809)
Q Consensus 318 V~~~~GTG~v~~~P~h~~~D~~~~~~~~l~~~~~~~~~G~~~~~~g-------~~~G~~~~~a~~~i~~~L~~~g~~~~~ 390 (809)
|++++|||+||+|||||++||++++++|||+++++|++|++++..+ .|+|+++++||++|+++|+++|++++.
T Consensus 320 V~~~~GTG~V~~~Pah~~~D~~~~~~~~l~~~~~vd~~g~~~~~~~~~~g~~~~~~g~~~~~a~~~ii~~L~~~g~l~~~ 399 (861)
T TIGR00392 320 VTTEDGTGIVHTAPGHGEEDYEIGKKYGLEVLSPVDEKGVYTEGVNDFQGRFVKDADKDIIKANKIIIEQLKDKGLLLKA 399 (861)
T ss_pred CCCCCCCceeEcCCCCCHHHHHHHHHcCCCcccccCCCceECCcCccccccccccCCccHHHhHHHHHHHHHhCCCeeee
Confidence 9999999999999999999999999999999999999999876554 489999999999999999999999999
Q ss_pred ecccccCcccccCCCeeEEeeccceeeeccHHHHHHHHHHhcCCceEecchhHHHHHHHHhcCCceeeeccccccceeeE
Q 003578 391 EPHTLRVPRSQRGGEVIEPLVSKQWFVTMEPLAEKALHAVEKGELTIMPERFEKIYNHWLSNIKDWCISRQLWWGHRIPV 470 (809)
Q Consensus 391 ~~~~~~~p~c~r~~~~i~~~~~~qwfl~~~~~~~~~~~~~~~~~~~~~P~~~~~~~~~~l~~l~Dw~ISRq~~WG~piP~ 470 (809)
+++.|.+|+|||||+|+++++++||||++++++++++++++ +++|+|+..++++.+||++++||||||||+||+|||+
T Consensus 400 ~~~~h~~p~~~R~~~~v~~~~~~QWFi~~~~~k~~~l~~~~--~i~~~P~~~~~~~~~~l~~l~DW~ISRqr~WG~pIP~ 477 (861)
T TIGR00392 400 EKITHSYPHCWRTKTPVIYRATEQWFIKTKDIKDQMLEQIK--KVNWVPEWGEGRFGNWLENRPDWCISRQRYWGIPIPI 477 (861)
T ss_pred eeEecCCCccCCCCCEEEEecCccccEEcHHHHHHHHHHhC--CcEEECchHHHHHHHHHhCCCcceeeccccCCCeeeE
Confidence 99999999999999999999999999999999999999996 6999999999999999999999999999999999999
Q ss_pred EEEcCCcccEEEcCChhHHHHHHh--------------------hhcCCCccccccCCccceeecccCccceecCCCCCC
Q 003578 471 WYIVGKEEEYIVARNADEALEKAH--------------------QKYGKNVEIYQDPDVLDTWFSSALWPFSTLGWPDVS 530 (809)
Q Consensus 471 ~~~~~~~~~~~~~~~~~~~~~~~~--------------------~~~~~~~~~~~~~dvld~Wfds~~~~~~~~~~~~~~ 530 (809)
|+|+++ +..++..++++..+... ..|++...+.|++|||||||||+++|++..+||.++
T Consensus 478 ~~~~~~-~~~~~~~~~~~~~~~~~~~g~~~w~~~~~~~~~~~~~~~~~~~~~~~r~~dvlDvWfdS~~~~~~~~~~~~~~ 556 (861)
T TIGR00392 478 WYCEDT-GEPIVVGSIEELIELIELKGIDAWFEDLHRDFLDKITLKSGDGGEYRRVPDVLDVWFDSGSMPYASIHYPFEN 556 (861)
T ss_pred EEECCC-CCCcCchhHHHHHHHHHHhCCccccccchhhhcCchhccCCCCcceEEccccccchhhcCcchHHhcCCCCCc
Confidence 999753 33356666655543211 122223568899999999999999999999998765
Q ss_pred hhhhhhcCCCcEEEeeehhHHhHHHHHHHHHHHhcCCCCceeEEEeeeEEccCCCcccccccCccChhhHHHhhCCchHH
Q 003578 531 ADDFKKFYPTTMLETGHDILFFWVARMVMMGIEFTGSVPFSHVYLHGLIRDSQGRKMSKTLGNVIDPIDTIKEFGADALR 610 (809)
Q Consensus 531 ~~~~~~~~p~d~~~~G~Di~~~w~~~~~~~~~~l~~~~Pf~~v~~hg~vld~~G~KMSKS~GN~I~p~dli~~ygaD~lR 610 (809)
.+|++|||+|++++|+||+|||+.+++..++.+.+..||+++++||++++.+|+|||||+||+|+|.|++++||+|++|
T Consensus 557 -~~f~~~~P~d~~i~G~Di~r~Wf~~~~~~~~~~~~~~P~k~v~~hG~vl~~~G~KMSKSkGNvI~p~d~i~~yGaDalR 635 (861)
T TIGR00392 557 -EKFKEVFPADFILEGSDQTRGWFYSSLAIGTALFGQAPYKNVITHGFTLDEKGRKMSKSLGNVVDPLKVINKYGADILR 635 (861)
T ss_pred -chhhccCCceEEEEecchhccHHHHHHHHHHHHcCCCChHhhEecceEECCCCCCcCCCCCCCCCHHHHHHHcCHHHHH
Confidence 5799999999999999999999999999999888999999999999999889999999999999999999999999999
Q ss_pred HHHhhCCCCCcccccHHHHHHHH-HHHHHHHHHHHHHH--HhCCCCCchhhHHHHhhhccchhhhhcCCCchhHHHHHHH
Q 003578 611 FTISLGTAGQDLSLSIERLTANK-AFTNKLWNAGKFIL--QNLPSQNDISRWEILLAYKFDEEECLCKAPLPECWVVSKL 687 (809)
Q Consensus 611 ~~ll~~~~~~d~~fs~~~l~~~~-~~~~kl~N~~~~~~--~~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~~d~~il~~l 687 (809)
|||++.++++|++|+++.+.... ++.+++||+++|+. +++.++.+... ......++..|+|+++++
T Consensus 636 ~~ll~~~~~~D~~fs~~~l~~~~~~~~n~l~N~~~~~~~~~~l~~~~~~~~-----------~~~~~~l~~~d~~ll~~l 704 (861)
T TIGR00392 636 LYVASSDPWEDLRFSDEILKQVVEKYRKIRWNTYRFLLTYANLDKFDPLFN-----------SVAVEKFPEEDRWILSRL 704 (861)
T ss_pred HHHHhCCCCCCceECHHHHHHHHHHHHHHHHHHHHHHHHHhccccCCcccc-----------ccccccCCHHHHHHHHHH
Confidence 99999955999999999998854 59999999999987 55543321000 001123456799999999
Q ss_pred HHHHHHHHHHhhcCChHHHHHHHHHHHHHhhHHHHHHHhhhhhhcCCCcHHHHHHHHHHHHHHHHHHHHhccchhHHHHH
Q 003578 688 HMLIDTVTASYDKYFFGDVGRETYDFFWSDFADWYIEASKARLYRSEYDSDAIIAQAVLLYIFENILKLLHPFMPFVTEE 767 (809)
Q Consensus 688 ~~~~~~v~~a~e~~~f~~a~~~i~~f~~~~~~n~Yi~~~k~~l~~~~~~~~~~~~~~~l~~vl~~l~~lL~P~~P~~aee 767 (809)
+.+++++.++|++|+|++|++.+++|++.+++|+|++..|++++....++.+++++++++.+++.+++||+|||||+||+
T Consensus 705 ~~~~~~v~~~~e~~~~~~a~~~l~~f~~~~l~n~Yi~~~k~~lw~~~~~~~~~~~~~~l~~~l~~l~~lL~P~~P~~aee 784 (861)
T TIGR00392 705 NSLVEEVNEALEKYNFHKVLRALQDFIVEELSNWYIRIIRDRLYCEAKDNDKRAAQTTLYYALLTLVRLLAPFLPHTAEE 784 (861)
T ss_pred HHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHHHHHhhHHhccCCCCHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHH
Confidence 99999999999999999999999999977799999999999888764444444788899999999999999999999999
Q ss_pred HHHHhccC--CCceEecCCCCCCC-cCCHHHHHHHHHHHHHHhh
Q 003578 768 LWQSLRKR--KEALIVSPWPQTSL-PRHMSAIKRFENLQSLVIL 808 (809)
Q Consensus 768 iw~~L~~~--~~sv~~~~wP~~~~-~~d~~~~~~~~~~~~~~~~ 808 (809)
||++|+.. .+||+.++||..+. ..|++++..++.+++++..
T Consensus 785 iw~~L~~~~~~~si~~~~wP~~~~~~~d~~~~~~~~~l~~~i~~ 828 (861)
T TIGR00392 785 IYQNLPGGEEEESVHLNLWPEVDEEFIDEALEANMAIVREIVEA 828 (861)
T ss_pred HHHhccccCCCCceeccCCCCCchhhcCHHHHHHHHHHHHHHHH
Confidence 99999864 46999999999985 6799999989988887754
No 18
>PLN02959 aminoacyl-tRNA ligase
Probab=100.00 E-value=3.1e-135 Score=1241.21 Aligned_cols=713 Identities=22% Similarity=0.368 Sum_probs=593.7
Q ss_pred CCCCCCCCCCh-hhHHHHHHHHHhcCCCCCCCCC----CCCCEEEeCCCCCCCCCCcchhhHHHHHHHHHHHHHHHCCCc
Q 003578 55 NKDTLPKTFDF-TSEERIYNWWESQGYFKPNFER----GSDPFVISMPPPNVTGSLHMGHAMFVTLEDIMVRYHRMKGRP 129 (809)
Q Consensus 55 ~~~~~~~~~~~-~~E~~~~~~W~~~~~f~~~~~~----~~~~f~i~~~pPy~nG~lHiGH~~~~~~~Di~~Ry~rm~G~~ 129 (809)
+.+..++.+++ ++|++||++|+++++|+++.+. ++++|++++||||+||.|||||++|++++|+++||+||+|++
T Consensus 5 ~~~~~~~r~~l~~iE~k~q~~W~~~~~fe~~~~~~~~~~~~kf~i~~ppPY~NG~lHiGHa~t~t~~D~i~Rykrm~G~~ 84 (1084)
T PLN02959 5 GGKSTARRDRLLEIEVAVQKWWEEEKVFEAEAGDEPPKPGEKFFGNFPYPYMNGLLHLGHAFSLSKLEFAAAYHRLRGAN 84 (1084)
T ss_pred cccCCchhcCHHHHHHHHHHHHHhcCCcccCcccccCCCCCcEEEeCCCCCCCCCcchhhHHHHHHHHHHHHHHHcCCCc
Confidence 34556778888 8999999999999999997653 247899999999999999999999999999999999999999
Q ss_pred ccccCCCCCCCCchHHHHHHHH---HHcCCCc----------------------cccCHHHHHHHHHHHHHH--------
Q 003578 130 TLWLPGTDHAGIATQLVVEKML---AAEGIKR----------------------VELSRDEFTKRVWEWKEK-------- 176 (809)
Q Consensus 130 V~~~~G~D~~Gl~~~~~~e~~~---~~~g~~~----------------------~~~~~~~f~~~~~~~~~~-------- 176 (809)
|+|++||||||+||+.++++.. ++.|..+ .++++++|+++|++++.+
T Consensus 85 vlfp~G~d~tGlPIe~~aek~~~ei~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~~~~~k~~~k~~~~~~~~ 164 (1084)
T PLN02959 85 VLLPFAFHCTGMPIKASADKLAREIQQYGNPPVFPEEDEDEAAAVAAAKAEAEAAAAPPDKFKGKKSKAVAKSGTQKYQW 164 (1084)
T ss_pred cCCCCCcCCCCccHHHHHHHHHHHHHHcCCCcccccccccccccccccccccccccccHHHHHHHHHHHHHHhCCchHHH
Confidence 9999999999999999998753 3445432 346778999999888755
Q ss_pred -------------------------HHHHHHHHHHHhcccccCCCccccCC--hhhHHHHHHHHHHHHHcCceeecCccc
Q 003578 177 -------------------------YGGTITSQIKRLGASCDWTRERFTLD--EQLSRAVVEAFIRLHEKGLIYQGSYMV 229 (809)
Q Consensus 177 -------------------------~~~~~~~~l~~lgi~~Dw~~~~~T~d--~~~~~~v~~~f~~L~~~Gliy~~~~~v 229 (809)
+...++++|++||+++||+|+|+|+| |.|.++|+|+|.+|+++|+||+|.++|
T Consensus 165 ~~~~~~~~~~~~i~~f~dp~~~~~yF~~~~~~~~k~lG~~iDW~r~f~T~d~np~y~~~v~wqf~~L~ekG~I~~g~rpv 244 (1084)
T PLN02959 165 EIMRSFGLPDSEIAKFQDPYHWLSYFPPLAKEDLKAFGLGCDWRRSFITTDVNPYYDAFVRWQFRKLKKKGKIVKDKRYT 244 (1084)
T ss_pred HHHhhcCCchhhhhhccCHHHHHHhccHHHHHHHHHhCceEeCCCCcCCCCCChhHHHHHHHHHHHHHHCCCEEecCeee
Confidence 22678999999999999999999999 999999999999999999999999999
Q ss_pred ccCCCCCcccCccccccccCCCceEE--EEEEec-----------CCCeeEEEEecCCccccCCcEEEECCCCc------
Q 003578 230 NWSPNLQTAVSDLEVEYSEEPGTLYY--IKYRVA-----------GRSDFLTIATTRPETLFGDVALAVNPQDE------ 290 (809)
Q Consensus 230 ~w~p~~~t~lsd~Ev~~~~~~~~~~~--~~f~~~-----------~~~~~l~v~Tt~petl~~~~av~v~p~~~------ 290 (809)
+|||.|+|+|||+|++|.+..++..| |||++. +++.++++||||||||+|++||+|||+++
T Consensus 245 ~wcp~~~t~ladhe~~~~e~~~~~~y~~ikf~v~~~~~~~~~~~~~~~~~l~~aTtrPeTl~g~ta~~VnP~~~Y~~~~~ 324 (1084)
T PLN02959 245 IYSPLDGQPCADHDRASGEGVGPQEYVLIKMEVLPPFPGKLKALEGKKVFLAAATLRPETMYGQTNCWVLPDGKYGAYEI 324 (1084)
T ss_pred eeCCCCCCCchhhHHhcCCCCCcceeEEEEEeecCcchhhhhhcCCCCeEEEEEeCccchhhhheeEEECCCCeEEEEEe
Confidence 99999999999999999998887766 678753 34579999999999999999999999976
Q ss_pred ----------h------h------------------hhcccCeeecCCCCCCe-eeEEecCCccccCCCCceeecCCCCh
Q 003578 291 ----------H------Y------------------SQFIGMMAIVPMTYGRH-VPIISDKYVDKEFGTGVLKISPGHDH 335 (809)
Q Consensus 291 ----------~------y------------------~~l~g~~~~~P~~~~~~-vpi~~~~~V~~~~GTG~v~~~P~h~~ 335 (809)
+ | ++|+|+++.+|++ +++ +||+++.||++++|||+||+||+||+
T Consensus 325 ~~~e~~i~s~~~~~~~~~q~~~~~~~~~~~l~~~~G~~L~G~~~~~Pl~-~~~~i~ilp~~~V~~~~GTGvV~~vPah~p 403 (1084)
T PLN02959 325 NDTEVFILTARAALNLAYQNFSKVPGKPTCLVELTGYDLIGLPLKSPLA-FNEVIYALPMLTILTDKGTGVVTSVPSDSP 403 (1084)
T ss_pred cCCeEEEEehhhhhhhHHhhhcccCCCcEEEEEEEHHHhCCCEEECCCC-CCcceeEeceEEEeCCCCeeeEEeCCCCCH
Confidence 1 4 4789999999995 555 99999999999999999999999999
Q ss_pred hhHHH----------HHHhCC--------CceeecCCCCc----------------------------------cccc--
Q 003578 336 NDYLL----------ARKLGL--------PILNVMNKDGT----------------------------------LNEV-- 361 (809)
Q Consensus 336 ~D~~~----------~~~~~l--------~~~~~~~~~G~----------------------------------~~~~-- 361 (809)
+||.+ +++||| ++++++|.+|. +.+.
T Consensus 404 dDy~~~~dl~~k~~~~~kygi~~~~~~~~~~i~iid~~g~G~~~a~~~~~~~~i~s~~d~~~l~~a~~~~Y~~~f~~g~m 483 (1084)
T PLN02959 404 DDYMALSDLKAKPALRAKYGVKDEWVLPFEVVPIINIPEFGDKSAEKVCEDLKIKSQNDKEKLAEAKRLTYLKGFTDGTM 483 (1084)
T ss_pred HHHHHHHhhccchhHHHHcCCCcccccccCCcCccccCCCCcchhHHHHHhhcccccchhhHHHHHhhhhhhhccccccc
Confidence 99998 577887 45788787653 3322
Q ss_pred -ccccCCCCHHHHHHHHHHHHHHCCCeee-eecccccCcccccCCCeeEEeeccceeeecc--HHHHHHHHHHhcCCceE
Q 003578 362 -AGLFRGLDRFEARKKLWSDLEETGLAVK-KEPHTLRVPRSQRGGEVIEPLVSKQWFVTME--PLAEKALHAVEKGELTI 437 (809)
Q Consensus 362 -~g~~~G~~~~~a~~~i~~~L~~~g~~~~-~~~~~~~~p~c~r~~~~i~~~~~~qwfl~~~--~~~~~~~~~~~~~~~~~ 437 (809)
+|.|+|++|++||++|+++|+++|+++. .++ ..|+|+|||+++++++++||||+++ +++++++++++ +++|
T Consensus 484 ~~g~~~G~~v~eAr~~Ii~~L~~~G~l~~~~ep---~~pv~~R~g~~~~v~l~~QWFi~~~~~~~k~~a~~~l~--~v~~ 558 (1084)
T PLN02959 484 LVGEYAGRKVQEAKPLIKKKLIEAGQAILYSEP---EKKVMSRSGDECVVALTDQWYLTYGEEEWKKKAEKCLS--KMNL 558 (1084)
T ss_pred cCcCcCCcCHHHHHHHHHHHHHhCCCceeeeEc---CCCeEECCCCEEEEeecCCeeEECCchHHHHHHHHHHc--ccEE
Confidence 7899999999999999999999998874 454 3589999999999999999999998 69999999995 6999
Q ss_pred ecchhHHHHHHHHhcCCceeeeccccccceeeE---EEEcCC--cccEEEcCChhHHHHHHhhhcCCC---ccccc-cCC
Q 003578 438 MPERFEKIYNHWLSNIKDWCISRQLWWGHRIPV---WYIVGK--EEEYIVARNADEALEKAHQKYGKN---VEIYQ-DPD 508 (809)
Q Consensus 438 ~P~~~~~~~~~~l~~l~Dw~ISRq~~WG~piP~---~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~-~~d 508 (809)
+|+..++++.+||++++||||||||+||||||+ |++++. +.-|+...+..+..... ..+|.. ....+ .+|
T Consensus 559 ~P~~~~~~~~~wl~~l~DWciSRQr~wGtpIPWd~~~~ieslsdstiy~a~yti~~~~~~~-~~~g~~~~~i~~~~~~~d 637 (1084)
T PLN02959 559 YSDETRHGFEHTLGWLNQWACSRSFGLGTRIPWDEQFLIESLSDSTIYMAYYTVAHLLQGG-DMYGKDKSSIKPEQMTDE 637 (1084)
T ss_pred ECHHHHHHHHHHHhCCCceeecccccCCCcCCcccceeeccCCCCceeechhhHHHHHhhh-hccCCccccCChhhcCcc
Confidence 999999999999999999999999999999993 233332 22344444444444331 122211 12222 678
Q ss_pred ccceeecccCccceecCCCCCC----hhhhhhcCCCcEEEeeehhHHhHHHHHHHHHHHhcCCCCc-eeEEEeeeEEccC
Q 003578 509 VLDTWFSSALWPFSTLGWPDVS----ADDFKKFYPTTMLETGHDILFFWVARMVMMGIEFTGSVPF-SHVYLHGLIRDSQ 583 (809)
Q Consensus 509 vld~Wfds~~~~~~~~~~~~~~----~~~~~~~~p~d~~~~G~Di~~~w~~~~~~~~~~l~~~~Pf-~~v~~hg~vld~~ 583 (809)
|+|+||+|++||+++ +||... +.+|++|||+|++++|+||+++|+.++++.+.+++++.|| +.+++||+++ .+
T Consensus 638 V~D~wF~Sg~~p~~t-~~p~~~l~~~r~ef~~~yP~Dl~~sG~Dii~~wl~~~l~~~~al~~~~P~p~~v~v~G~V~-~~ 715 (1084)
T PLN02959 638 VWDFVFCGGPLPKSS-DIPAELLEKMKQEFEYWYPFDLRVSGKDLIQNHLTFAIYNHTAIWAEEHWPRGFRCNGHLM-LN 715 (1084)
T ss_pred ceeEeecCCCccccc-CCCHHHHhhhhHHHHhhCCCeEEEecccHHHHHHHHHHHHHHHhcCCCCCCceEEEccEEe-cC
Confidence 999999999999987 888753 5789999999999999999999999999999999999999 5799999998 99
Q ss_pred CCcccccccCccChhhHHHhhCCchHHHHHhhCCC-CCcccccHHHHHHHHHHHHHHHHHHHHHHHhCCCCCchhhHHHH
Q 003578 584 GRKMSKTLGNVIDPIDTIKEFGADALRFTISLGTA-GQDLSLSIERLTANKAFTNKLWNAGKFILQNLPSQNDISRWEIL 662 (809)
Q Consensus 584 G~KMSKS~GN~I~p~dli~~ygaD~lR~~ll~~~~-~~d~~fs~~~l~~~~~~~~kl~N~~~~~~~~l~~~~~~~~~~~~ 662 (809)
|+|||||+||+|+|.++|++||+|++||||+++.+ .+|.+|+++...+ +..++.|.++++..++.....
T Consensus 716 G~KMSKSkGNvI~p~diI~kyGADalRl~la~~~~~~~D~nF~~k~~n~---~~~~l~n~~~~~~~~~~~~~~------- 785 (1084)
T PLN02959 716 SEKMSKSTGNFLTLRQAIEEFSADATRFALADAGDGVDDANFVFETANA---AILRLTKEIAWMEEVLAAESS------- 785 (1084)
T ss_pred CcCccccCCCcCCHHHHHHHhCchHHHHHHhhcCCccCCCCccHHHHHH---HHHHHHHHHHHHHHhhhhhcc-------
Confidence 99999999999999999999999999999998866 8999999987764 344556655555443321000
Q ss_pred hhhccchhhhhcCCCchhHHHHHHHHHHHHHHHHHhhcCChHHHHHHHHHHHHHhhHHHH-HHHhhh--hhhcCCCcHHH
Q 003578 663 LAYKFDEEECLCKAPLPECWVVSKLHMLIDTVTASYDKYFFGDVGRETYDFFWSDFADWY-IEASKA--RLYRSEYDSDA 739 (809)
Q Consensus 663 ~~~~~~~~~~~~~l~~~d~~il~~l~~~~~~v~~a~e~~~f~~a~~~i~~f~~~~~~n~Y-i~~~k~--~l~~~~~~~~~ 739 (809)
+ .....+...|+|++++++.+++++.++|++|+|+.|++.. +| ++..++ +++++.+
T Consensus 786 ----~---~~~~~~~~~D~wils~l~~~i~~v~~a~e~y~f~~A~~~~----------~Yel~~~k~~yr~~~~~~---- 844 (1084)
T PLN02959 786 ----L---RTGPPSTYADRVFENEINIAIAETEKNYEAMMFREALKSG----------FYDLQAARDEYRLSCGSG---- 844 (1084)
T ss_pred ----c---CCcccCCHHHHHHHHHHHHHHHHHHHHHHcccHHHHHHHH----------HHHHHHhHHHHhhccccc----
Confidence 0 0011245689999999999999999999999999999853 23 444444 5554311
Q ss_pred HHHHHHHHHHHHHHHHHhccchhHHHHHHHHHhccCCCceEecCCCCCCCcCCHHHHHHHHHHHHHHhh
Q 003578 740 IIAQAVLLYIFENILKLLHPFMPFVTEELWQSLRKRKEALIVSPWPQTSLPRHMSAIKRFENLQSLVIL 808 (809)
Q Consensus 740 ~~~~~~l~~vl~~l~~lL~P~~P~~aeeiw~~L~~~~~sv~~~~wP~~~~~~d~~~~~~~~~~~~~~~~ 808 (809)
...+.+++.+++.+++||+|||||+|||||+.|.+..+||+.++||..+. .|++++..++.++++++.
T Consensus 845 ~~~~~~L~~vl~~~l~LLaP~~PfiaEEiW~~l~~~~~sI~~~~wP~~~~-~d~~~e~~~~~l~~~i~~ 912 (1084)
T PLN02959 845 GMNRDLVWRFMDVQTRLITPICPHYAEHVWREILKKEGFAVTAGWPVAGE-PDLTLKRANKYLQDSIVS 912 (1084)
T ss_pred hHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHhccCCCCeEEecCCCCCCc-cCHHHHHHHHHHHHHHHH
Confidence 14577899999999999999999999999999954446999999999874 588888888887777654
No 19
>TIGR00395 leuS_arch leucyl-tRNA synthetase, archaeal and cytosolic family. The leucyl-tRNA synthetases belong to two families so broadly different that they are represented by separate models. This model includes both archaeal and cytosolic eukaryotic leucyl-tRNA synthetases; the eubacterial and mitochondrial forms differ so substantially that some other tRNA ligases score higher by this model than does any eubacterial LeuS.
Probab=100.00 E-value=1.5e-134 Score=1228.09 Aligned_cols=699 Identities=24% Similarity=0.381 Sum_probs=596.3
Q ss_pred hhHHHHHHHHHhcCCCCCCCCCCCCCEEEeCCCCCCCCCCcchhhHHHHHHHHHHHHHHHCCCcccccCCCCCCCCchHH
Q 003578 66 TSEERIYNWWESQGYFKPNFERGSDPFVISMPPPNVTGSLHMGHAMFVTLEDIMVRYHRMKGRPTLWLPGTDHAGIATQL 145 (809)
Q Consensus 66 ~~E~~~~~~W~~~~~f~~~~~~~~~~f~i~~~pPy~nG~lHiGH~~~~~~~Di~~Ry~rm~G~~V~~~~G~D~~Gl~~~~ 145 (809)
++|++||++|+++++|+++.+ ++++|+|++||||+||.|||||+++++++|+++||+||+|++|+|++||||||+||+.
T Consensus 2 ~iE~k~~~~W~~~~~fe~~~~-~~~kf~i~~ppPy~nG~lH~GH~~~~~~~D~~aRy~Rm~G~~vl~p~G~d~~G~pi~~ 80 (938)
T TIGR00395 2 AIEKKWQKRWEEAHIFEADPD-DREKFFLTMAYPYLNGVMHAGHCRTFTIPEVSARFERMKGKNVLFPLGFHVTGTPILG 80 (938)
T ss_pred hHHHHHHHHHHhCCCcccCCC-CCCceEEecCCCCCCCCcccchhhhhhHHHHHHHHHHhcCCccCCCCccCCCCCchHH
Confidence 589999999999999998765 4678999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHcC------CCccccCHHHHHHHH--HHHHHHHHHHHHHHHHHhcccccCCCccccCChhhHHHHHHHHHHHH
Q 003578 146 VVEKMLAAEG------IKRVELSRDEFTKRV--WEWKEKYGGTITSQIKRLGASCDWTRERFTLDEQLSRAVVEAFIRLH 217 (809)
Q Consensus 146 ~~e~~~~~~g------~~~~~~~~~~f~~~~--~~~~~~~~~~~~~~l~~lgi~~Dw~~~~~T~d~~~~~~v~~~f~~L~ 217 (809)
.+++...+.+ .+..++++++|.+.| ++|++++.+.+++||++||+++||+|+|+|+||.|.++|+|+|.+|+
T Consensus 81 ~aek~~~~~~~~~~~~~~~~~i~~~~i~~~~~~~~~~~~~~~~~~~~~~~lG~s~DW~r~~~T~dp~y~~~v~~~f~~L~ 160 (938)
T TIGR00395 81 LAELIKRRDELTIKNYTEVHAIPREELLKFTDPEYIVEYFSREAESACKSMGYSIDWRRSFKTTDPYYDRFIEWQMNKLK 160 (938)
T ss_pred HHHHhhhhhhhccccchhhccCCHHHHHhhcCHHHHHHHHHHHHHHHHHHhCceEECCCCccCCChhHHHHHHHHHHHHH
Confidence 8887543321 134578999999987 99999999999999999999999999999999999999999999999
Q ss_pred HcCceeecCcccccCCCCCcccCccccccccCC--CceEEEEEEecCCCeeEEEEecCCccccCCcEEEECCCCc-----
Q 003578 218 EKGLIYQGSYMVNWSPNLQTAVSDLEVEYSEEP--GTLYYIKYRVAGRSDFLTIATTRPETLFGDVALAVNPQDE----- 290 (809)
Q Consensus 218 ~~Gliy~~~~~v~w~p~~~t~lsd~Ev~~~~~~--~~~~~~~f~~~~~~~~l~v~Tt~petl~~~~av~v~p~~~----- 290 (809)
++|+||++.++|+|||.|+|+|||+|+++.+.. +.+++|+|++.+.+.+++|||||||||+|++||+|||+++
T Consensus 161 e~G~iy~g~~~v~wcp~~~t~lsd~e~~~~e~~~~~~~~~ikf~~~~~~~~l~~aTtRPETl~g~tav~V~P~~~Y~~~~ 240 (938)
T TIGR00395 161 ELGLIVKGEHPVRYCPKDGNPVEDHDLLSGEGVTIVEYILIKFELEDGAFYFVAATLRPETVYGVTNCWVNPTITYVIAE 240 (938)
T ss_pred HCCCEecCCeeEeecCCCCCCCchhHhccCCccccceEEEEEEEcCCCceEEEEeeCCcchhhcceeEEECCCCcEEEEE
Confidence 999999999999999999999999999987754 4679999999877789999999999999999999999986
Q ss_pred ----------------hh-------------hhcccCeeecCCCCCCeeeEEecCCccccCCCCceeecCCCChhhHHHH
Q 003578 291 ----------------HY-------------SQFIGMMAIVPMTYGRHVPIISDKYVDKEFGTGVLKISPGHDHNDYLLA 341 (809)
Q Consensus 291 ----------------~y-------------~~l~g~~~~~P~~~~~~vpi~~~~~V~~~~GTG~v~~~P~h~~~D~~~~ 341 (809)
+| ++|+|+++.+|+ .++.+||++++||++++|||+||+||+||++||+++
T Consensus 241 ~~~e~~i~s~~~~~~~~~q~~~~~~~~~~~g~~l~G~~~~~P~-~~~~ipil~~~~V~~~~GTGvV~~~Pah~p~Dy~~~ 319 (938)
T TIGR00395 241 VGGEKWITSKEAFENLSYQKLKYKPIEEVPGKQFIGKKVHNPV-VGPEVPILPAEFVDTTKGTGVVMSVPAHAPDDYIAL 319 (938)
T ss_pred eCCcEEEEeHHHHHhhhhcccceeEEEEEchHhccCCEEECCC-CCCeeEEeecceeecCCCcceEEeCCCCCHHHHHHH
Confidence 23 679999999998 689999999999999999999999999999999998
Q ss_pred HHh--------------CCCceeecCC---------------------------------------CCcccccccccCCC
Q 003578 342 RKL--------------GLPILNVMNK---------------------------------------DGTLNEVAGLFRGL 368 (809)
Q Consensus 342 ~~~--------------~l~~~~~~~~---------------------------------------~G~~~~~~g~~~G~ 368 (809)
+++ +++++++++. +|.|++++|.|+|+
T Consensus 320 ~~l~~~~~~~gi~~~~~~~~~i~ii~~~~~g~~~a~~~~~~~~i~~~~d~~~l~~a~~~~y~~~f~~G~m~~~~~~~~G~ 399 (938)
T TIGR00395 320 EDLLHDPEYLGIKPVVIDIEPVPLIHTDGYGDLPAKEIVEEKGIKSQKDKNLLEEATKILYKEEYHTGVMIYNIPPYKGM 399 (938)
T ss_pred HHhhhcchhcCCcchhcccCCccceecCCCCcccHHHHHHHhcCCCchhhhHHHHHHHHHhhhhccCceeccCCcccCCc
Confidence 874 3444544322 46777788999999
Q ss_pred CHHHHHHHHHHHHHHCCCeeeeecccccCcccccCCCeeEEe-eccceeeecc--HHHHHHHHHHhcCCceEecchhHHH
Q 003578 369 DRFEARKKLWSDLEETGLAVKKEPHTLRVPRSQRGGEVIEPL-VSKQWFVTME--PLAEKALHAVEKGELTIMPERFEKI 445 (809)
Q Consensus 369 ~~~~a~~~i~~~L~~~g~~~~~~~~~~~~p~c~r~~~~i~~~-~~~qwfl~~~--~~~~~~~~~~~~~~~~~~P~~~~~~ 445 (809)
+|++||++|+++|+++|++++.+.+.+ .|+|+|||++++++ +++||||+++ +++++++++++ +++|+|+..+++
T Consensus 400 ~v~ear~~i~~~L~~~g~~~~~~~~~~-~~v~~R~g~~~vv~~~~~QWFi~~~~~~~k~~~~~~l~--~~~~~P~~~~~~ 476 (938)
T TIGR00395 400 KVSEAKEKVKADLIDAGLADVMYEFSE-SPVICRCGTDCIVKVVEDQWFVKYSDESWKELAHECLE--GMRIIPEEVKNA 476 (938)
T ss_pred CHHHhHHHHHHHHHHCCCceEeeecCC-CCcEecCCCeEEEeccCCCCeEEcCcHHHHHHHHHHHh--cCEEeCHHHHHH
Confidence 999999999999999999998776643 57788999999987 9999999999 59999999997 589999999999
Q ss_pred HHHHHhcCCceeeeccccccceeeE---EEEcCCcc--cEEEcCChhHHHHHHhhhcCCCccccccCCccceeecccCcc
Q 003578 446 YNHWLSNIKDWCISRQLWWGHRIPV---WYIVGKEE--EYIVARNADEALEKAHQKYGKNVEIYQDPDVLDTWFSSALWP 520 (809)
Q Consensus 446 ~~~~l~~l~Dw~ISRq~~WG~piP~---~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dvld~Wfds~~~~ 520 (809)
+.+||++++||||||||+||+|||+ |.++..++ -|+...+....+... .++. . ...++++|+||.++..+
T Consensus 477 ~~~~l~~l~DW~ISRqr~WGtpIP~d~~~~ieslsdstiY~~~~~i~~~l~~~--~~~~-~--~l~~ev~D~~~~~~~~~ 551 (938)
T TIGR00395 477 FEGKIDWLKDWACCRRYGLGTRLPWDEKWLIESLSDSTIYMAYYTIAHYLNKD--YYGN-E--QMTDEFFDYIFLGKGDV 551 (938)
T ss_pred HHHHHhhhhhcccccccccCcccceeecEEeeecchhhhhhhhccHHHHhhcc--CCCh-H--HCCcccCceEEECCCCh
Confidence 9999999999999999999999996 55543222 122212222111110 0110 0 12467999999865443
Q ss_pred ceecCCCCC----ChhhhhhcCCCcEEEeeehhHHhHHHHHHHHHHHhcCCCCc-eeEEEeeeEEccCCCcccccccCcc
Q 003578 521 FSTLGWPDV----SADDFKKFYPTTMLETGHDILFFWVARMVMMGIEFTGSVPF-SHVYLHGLIRDSQGRKMSKTLGNVI 595 (809)
Q Consensus 521 ~~~~~~~~~----~~~~~~~~~p~d~~~~G~Di~~~w~~~~~~~~~~l~~~~Pf-~~v~~hg~vld~~G~KMSKS~GN~I 595 (809)
...++|.. .+.+|++|||+|+|++|+||++||..++++++.++.+..|+ +++++||+++ .+|+|||||+||+|
T Consensus 552 -~~t~~~~~~~~~~~~ef~~~yP~D~~~~GkDii~~H~~~~i~~~~a~~~~~~~Pk~i~~~G~vl-~~G~KMSKSlGNvI 629 (938)
T TIGR00395 552 -KNTNIPLPAIQKLRREFEYWYPLDWRISGKDLIPNHLTFYIFHHVAIFPEKFWPRGIVVNGYVM-LEGKKMSKSKGNVL 629 (938)
T ss_pred -hhcCCCHHHHHHHHHHHhhcCCceEEEEeeccccchHHHHHHHHHHcCCccccCcEEEEeceEE-eCCccccCcCCCCC
Confidence 33456543 14689999999999999999999999888888777665445 8999999998 59999999999999
Q ss_pred ChhhHHHhhCCchHHHHHhhCCC-CCcccccHHHHHHHHHHHHHHHHHHHHHHHhCCCCCchhhHHHHhhhccchhhhhc
Q 003578 596 DPIDTIKEFGADALRFTISLGTA-GQDLSLSIERLTANKAFTNKLWNAGKFILQNLPSQNDISRWEILLAYKFDEEECLC 674 (809)
Q Consensus 596 ~p~dli~~ygaD~lR~~ll~~~~-~~d~~fs~~~l~~~~~~~~kl~N~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~ 674 (809)
+|.+++++||+|++||||++.+. ++|++|+++.+.+..+++++++|+++++......... .
T Consensus 630 ~p~d~i~~yGaDalRl~Ll~~~~~~~D~~fs~~~~~~~~~~l~~l~n~~~~~~~~~~~~~~------------------~ 691 (938)
T TIGR00395 630 TLEQAVEKFGADVARLYIADAAETVQDADWKESEVEGTILRLERLYEFAEEITKESNLETG------------------E 691 (938)
T ss_pred CHHHHHHHcChHHHHHHHHhcCCCCCCCCcCHHHHHHHHHHHHHHHHHHHHHHhhcccCCC------------------c
Confidence 99999999999999999998865 9999999999999888999999998877543210000 1
Q ss_pred CCCchhHHHHHHHHHHHHHHHHHhhcCChHHHH-HHHHHHHHHhhHHHHHHHhhhhhhcCCCcHHHHHHHHHHHHHHHHH
Q 003578 675 KAPLPECWVVSKLHMLIDTVTASYDKYFFGDVG-RETYDFFWSDFADWYIEASKARLYRSEYDSDAIIAQAVLLYIFENI 753 (809)
Q Consensus 675 ~l~~~d~~il~~l~~~~~~v~~a~e~~~f~~a~-~~i~~f~~~~~~n~Yi~~~k~~l~~~~~~~~~~~~~~~l~~vl~~l 753 (809)
.++..|+|++++++.+++++.++|++|+|+.|+ ..+++|++ .+|+|++..+.+ ...++..+++.+
T Consensus 692 ~~~~~D~wlls~l~~~i~~v~~a~e~~~~~~Al~~~l~~~~~--~~n~Yl~~~~~~------------~~~~l~~~l~~~ 757 (938)
T TIGR00395 692 ETSFIDRWLESRMNAAIKETYEAMENFQTRKAVKYALFDLQA--DVDWYRRRGGVN------------HKDVLARYLETW 757 (938)
T ss_pred cCChHHHHHHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHH--HHHHHHHhCcch------------HHHHHHHHHHHH
Confidence 234579999999999999999999999999999 67889974 489998753221 234788999999
Q ss_pred HHHhccchhHHHHHHHHHhccCCCceEecCCCCCCC-cCCHHHHHHHHHHHHHHhhC
Q 003578 754 LKLLHPFMPFVTEELWQSLRKRKEALIVSPWPQTSL-PRHMSAIKRFENLQSLVILI 809 (809)
Q Consensus 754 ~~lL~P~~P~~aeeiw~~L~~~~~sv~~~~wP~~~~-~~d~~~~~~~~~~~~~~~~~ 809 (809)
++||+|||||+||+||+.|+.. +||+.++||++++ .+|++++..++.++++++.+
T Consensus 758 ~~LLaP~~P~~aEeiw~~Lg~~-~sv~~~~wP~~~~~~~d~~~~~~~~~~~~~i~~i 813 (938)
T TIGR00395 758 IKLLAPFAPHFAEEMWEEVGNE-GFVSLAKFPEASEPAVDKEVEAAEEYLRNLVRDI 813 (938)
T ss_pred HHHhcCcccHHHHHHHHHcCCC-CeEEecCCCCCCcccCCHHHHHHHHHHHHHHHHH
Confidence 9999999999999999999754 6999999999986 67999999999999998753
No 20
>PF00133 tRNA-synt_1: tRNA synthetases class I (I, L, M and V); InterPro: IPR002300 The aminoacyl-tRNA synthetases (6.1.1. from EC) catalyse the attachment of an amino acid to its cognate transfer RNA molecule in a highly specific two-step reaction. These proteins differ widely in size and oligomeric state, and have limited sequence homology []. The 20 aminoacyl-tRNA synthetases are divided into two classes, I and II. Class I aminoacyl-tRNA synthetases contain a characteristic Rossman fold catalytic domain and are mostly monomeric []. Class II aminoacyl-tRNA synthetases share an anti-parallel beta-sheet fold flanked by alpha-helices [], and are mostly dimeric or multimeric, containing at least three conserved regions [, , ]. However, tRNA binding involves an alpha-helical structure that is conserved between class I and class II synthetases. In reactions catalysed by the class I aminoacyl-tRNA synthetases, the aminoacyl group is coupled to the 2'-hydroxyl of the tRNA, while, in class II reactions, the 3'-hydroxyl site is preferred. The synthetases specific for arginine, cysteine, glutamic acid, glutamine, isoleucine, leucine, methionine, tyrosine, tryptophan and valine belong to class I synthetases. The synthetases specific for alanine, asparagine, aspartic acid, glycine, histidine, lysine, phenylalanine, proline, serine, and threonine belong to class-II synthetases []. Based on their mode of binding to the tRNA acceptor stem, both classes of tRNA synthetases have been subdivided into three subclasses, designated 1a, 1b, 1c and 2a, 2b, 2c. The class Ia aminoacyl-tRNA synthetases consist of the isoleucyl, methionyl, valyl, leucyl, cysteinyl, and arginyl-tRNA synthetases; the class Ib include the glutamyl and glutaminyl-tRNA synthetases, and the class Ic are the tyrosyl and tryptophanyl-tRNA synthetases [].; GO: 0000166 nucleotide binding, 0004812 aminoacyl-tRNA ligase activity, 0005524 ATP binding, 0006418 tRNA aminoacylation for protein translation, 0005737 cytoplasm; PDB: 1OBC_A 2AJH_B 4ARI_A 2AJG_B 4AQ7_D 2AJI_B 4ARC_A 4AS1_A 1QU3_A 1QU2_A ....
Probab=100.00 E-value=2.7e-136 Score=1196.61 Aligned_cols=552 Identities=41% Similarity=0.771 Sum_probs=485.8
Q ss_pred HHHHHHHhcCCCCCC--CCCCCCCEEEeCCCCCCCCCCcchhhHHHHHHHHHHHHHHHCCCcccccCCCCCCCCchHHHH
Q 003578 70 RIYNWWESQGYFKPN--FERGSDPFVISMPPPNVTGSLHMGHAMFVTLEDIMVRYHRMKGRPTLWLPGTDHAGIATQLVV 147 (809)
Q Consensus 70 ~~~~~W~~~~~f~~~--~~~~~~~f~i~~~pPy~nG~lHiGH~~~~~~~Di~~Ry~rm~G~~V~~~~G~D~~Gl~~~~~~ 147 (809)
|||++|+++++|++. .++++++|+|++||||+||.|||||++|++++|+++||+||+|++|+|++||||||+|||.++
T Consensus 1 k~~~~W~~~~~~~~~~~~~~~~~~f~i~~~PPy~nG~lH~GH~~~~~~~D~i~Ry~rm~G~~v~~~~G~D~~Glpie~~v 80 (601)
T PF00133_consen 1 KWQKFWEENKLFEKQLEKNKNKPKFFIHDPPPYANGDLHIGHALNKTIKDIIARYKRMQGYNVLFPPGWDCHGLPIEAKV 80 (601)
T ss_dssp HHHHHHHHTTCCHHHHHCTTTSGEEEEEE---BTSSS-BHHHHHHHHHHHHHHHHHHCTTSEEEEEEEEB--SHHHHHHH
T ss_pred CHhHHHhhCCCcccccccCCCCCcEEEEeCCCCCCCcccHHHHHHHHHHHHHHHHHHhCCcEeCCCCCcCCCCcchhhhH
Confidence 799999999999987 455688999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHH-HcCCCccccCHHHHHHHHHHHHHHHHHHHHHHHHHhcccccCCCccccCChhhHHHHHHHHHHHHHcCceeecC
Q 003578 148 EKMLA-AEGIKRVELSRDEFTKRVWEWKEKYGGTITSQIKRLGASCDWTRERFTLDEQLSRAVVEAFIRLHEKGLIYQGS 226 (809)
Q Consensus 148 e~~~~-~~g~~~~~~~~~~f~~~~~~~~~~~~~~~~~~l~~lgi~~Dw~~~~~T~d~~~~~~v~~~f~~L~~~Gliy~~~ 226 (809)
++.+. +.+.+..++++++|++.|++|++++++.+++||++||+++||+|+|+|+||.|.++++++|.+|+++||||++.
T Consensus 81 ek~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lG~~~Dw~~~y~T~d~~y~~~v~~~F~~l~~kglIyr~~ 160 (601)
T PF00133_consen 81 EKKLGIKEKKDRKDLGREEFREECREWAEEFIEEQKEQFKRLGVSIDWDREYFTMDPEYEKFVWWQFKKLYEKGLIYRGK 160 (601)
T ss_dssp HHHTTTTSHHHCSCSTHHHHHHHHHHHHHHHHHHHHHHHHHTT--SECTCEEETTSHHHHHHHHHHHHHHHHTTSEEEEE
T ss_pred HHhhcccccccccccccccchhhhcchhhhhhhhhhhhhhheeeecccCCceEECCccHhHHHHHHHHHHHhcCcEEeeC
Confidence 98763 33346778999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cccccCCCCCcccCccccccccCCCceEEEEEEecCCCe-eEEEEecCCccccCCcEEEECCC-----------------
Q 003578 227 YMVNWSPNLQTAVSDLEVEYSEEPGTLYYIKYRVAGRSD-FLTIATTRPETLFGDVALAVNPQ----------------- 288 (809)
Q Consensus 227 ~~v~w~p~~~t~lsd~Ev~~~~~~~~~~~~~f~~~~~~~-~l~v~Tt~petl~~~~av~v~p~----------------- 288 (809)
++|+|||.|+|+|||+||+|++..++++||+|++.+++. +++|||||||||+||+||+|||+
T Consensus 161 ~pv~w~p~~~t~lsd~Ev~~~~~~~~~~~v~f~~~~~~~~~l~i~TtrPeTl~~~~ai~vnP~~~Y~~~~~~~i~~~~~~ 240 (601)
T PF00133_consen 161 KPVNWCPSCQTALSDHEVEYKEVKSPSIYVKFPLKDGEEVYLVIWTTRPETLPGNTAIAVNPDFDYVINGERYIVAKDLV 240 (601)
T ss_dssp EEEEEETTTTEEE-GGGEEEEEEEEEEEEEEEEESSSSEEEEEEEES-GGGGGG-BEEEE-TTSEEEETTEEEEEEHHHH
T ss_pred CCCCcCcccccchhhhhcccccccCceEEEEEEecCccceEEEEEechhhHHhCCeeEEECCCccceeCCeeehHHHHHH
Confidence 999999999999999999999999999999999988775 99999999999999999999999
Q ss_pred ------------CchhhhcccCeeecCCCCCCeeeEEecCCccccCCCCceeecCCCChhhHHHHHHhCCCceeecCCCC
Q 003578 289 ------------DEHYSQFIGMMAIVPMTYGRHVPIISDKYVDKEFGTGVLKISPGHDHNDYLLARKLGLPILNVMNKDG 356 (809)
Q Consensus 289 ------------~~~y~~l~g~~~~~P~~~~~~vpi~~~~~V~~~~GTG~v~~~P~h~~~D~~~~~~~~l~~~~~~~~~G 356 (809)
+.++++|+|+++.||+ .++.+||++++||++++|||+||+|||||++||+++++++||+++++|++|
T Consensus 241 ~~~~~~~~~~~~~~~g~~L~g~~~~~P~-~~~~~~vi~~~~V~~~~GTGiV~~~Pah~~~Dy~~~~~~~l~~~~~id~~G 319 (601)
T PF00133_consen 241 EKLSKQEKTKLEDFRGKELVGLKYIHPL-TGREVPVIPDDFVDMDKGTGIVHSAPAHGPDDYEIGKKHNLPIINPIDEDG 319 (601)
T ss_dssp HHHHTTTSSSEEEEECHHHTTSEEE-TT-SSSSEEEEEETTS-SSSTTSEEEE-TTT-HHHHHHHHHHHHCCGCCCCCTS
T ss_pred HHHHhhhhhcccccCcceecCcEecccc-ccceeEEEcccccccccchhhhhhcccCCHHHHHHHhhcCceeeEecCCCc
Confidence 6678899999999999 689999999999999999999999999999999999999999999999999
Q ss_pred cccccccccCCCCHHHHHHHHHHHHHHCCCeeeeecccccCcccccCCCeeEEeeccceeeeccHHHHHHHHHHhcCCce
Q 003578 357 TLNEVAGLFRGLDRFEARKKLWSDLEETGLAVKKEPHTLRVPRSQRGGEVIEPLVSKQWFVTMEPLAEKALHAVEKGELT 436 (809)
Q Consensus 357 ~~~~~~g~~~G~~~~~a~~~i~~~L~~~g~~~~~~~~~~~~p~c~r~~~~i~~~~~~qwfl~~~~~~~~~~~~~~~~~~~ 436 (809)
++++.+|.|.|+++++||++|++.|+++|++++.+++.|++|+|||||++|++++++||||++++++++++++++ +++
T Consensus 320 ~~~~~~~~~~G~~v~~ar~~ii~~L~~~g~l~~~~~~~~~~p~c~R~~~~ii~~~~~QWFi~~~~~k~~~l~~~~--~i~ 397 (601)
T PF00133_consen 320 RFTEEAGKFKGMKVFEAREKIIEDLKEKGLLLKIEEIEHSYPHCWRSGTPIIPRLTDQWFIKYDDWKKKALEALE--KIK 397 (601)
T ss_dssp TBBSCCSTTTTSBHHHHHHHHHHHHHHTTSEEEEEEEEEEEEEETTTSCBEEEEEEEEEEEEHHHHHHHHHHHHH--TSE
T ss_pred eEeecccccCCceeeeccHHHHHHHHHhhhhccccccccccceecCCCCEEEecccceeEEecHHhHHHHHhhcc--cce
Confidence 999999999999999999999999999999999999999999999999999999999999999999999999998 799
Q ss_pred EecchhHHHHHHHHhcCCceeeeccccccceeeEEEEcCCcccEEEcCChhHHHHHHh--------------hhc-CCCc
Q 003578 437 IMPERFEKIYNHWLSNIKDWCISRQLWWGHRIPVWYIVGKEEEYIVARNADEALEKAH--------------QKY-GKNV 501 (809)
Q Consensus 437 ~~P~~~~~~~~~~l~~l~Dw~ISRq~~WG~piP~~~~~~~~~~~~~~~~~~~~~~~~~--------------~~~-~~~~ 501 (809)
|+|+..++++.+||++++||||||||+||+|||+|+|+.+ +...+..+..+...... ..+ ..+.
T Consensus 398 ~~P~~~~~~~~~~i~~l~DWcISRQR~WG~PIPiw~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 476 (601)
T PF00133_consen 398 FYPESYRKRFENWIDNLRDWCISRQRYWGTPIPIWYCEDC-GEVLVIESTIELIADRVEKEGIDAWLHKPAEDKLPCCGG 476 (601)
T ss_dssp ESSSTCHHHHHHHHHT--EEE-EESSSSSEBETEEEETTS-EEEECCGGHHHHHHHHSTHHHHSCTSSHHHHHHHTTTSS
T ss_pred EEcccchhhhhhhccccccchhhccCCCCccceeeecccC-ccccccccccccccccccccccccccccccccccccccc
Confidence 9999999999999999999999999999999999999763 33333332222221110 011 2345
Q ss_pred cccccCCccceeecccCccceecCCCCCChhhhhhcCCCcEEEeeehhHHhHHHHHHHHHHHhcCCCCceeEEEeeeEEc
Q 003578 502 EIYQDPDVLDTWFSSALWPFSTLGWPDVSADDFKKFYPTTMLETGHDILFFWVARMVMMGIEFTGSVPFSHVYLHGLIRD 581 (809)
Q Consensus 502 ~~~~~~dvld~Wfds~~~~~~~~~~~~~~~~~~~~~~p~d~~~~G~Di~~~w~~~~~~~~~~l~~~~Pf~~v~~hg~vld 581 (809)
.+.+++|||||||||+++|++.++||.+++.+|++|||+|++++|+||+++|++++++.+.++.++.||+++++||+++|
T Consensus 477 ~~~~~~dvlD~WfdSg~~~~~~~~~~~~~~~~~~~~~P~D~~~~G~D~~~~W~~~~l~~~~~l~~~~pfk~v~~hG~vld 556 (601)
T PF00133_consen 477 ELRRDTDVLDTWFDSGLWPFAVLGWPENDREEFEYWYPVDLYIEGKDQIRGWFQSSLFLSVALFGKEPFKKVITHGFVLD 556 (601)
T ss_dssp EEEEHS-EE-HHHHHCTCHHHHTTSTTCSCHHHHHHSSBSEEEEEGGGTTTHHHHHHHHHHHHSSSTSBSEEEEE--EEE
T ss_pred ceEEeeeeccccccccCCcccccccccccchhccccCCcccccCCccchhhHHHHhHhhccccccCCchheeeecccccc
Confidence 78899999999999999999999999987789999999999999999999999999999999999999999999999999
Q ss_pred cCCCcccccccCccChhhHHHhhCCchHHHHHhh-CCCCCccccc
Q 003578 582 SQGRKMSKTLGNVIDPIDTIKEFGADALRFTISL-GTAGQDLSLS 625 (809)
Q Consensus 582 ~~G~KMSKS~GN~I~p~dli~~ygaD~lR~~ll~-~~~~~d~~fs 625 (809)
.+|+|||||+||+|+|.+++++||||++|+|+++ +.+.+|++||
T Consensus 557 ~~G~KMSKS~GNvi~p~~ii~~yGaD~lRl~~~~~~~~~~D~~~s 601 (601)
T PF00133_consen 557 EDGRKMSKSKGNVIDPEDIIEKYGADALRLWLASSADPGQDINFS 601 (601)
T ss_dssp TTSSB-BTTTTB--BHHHHHHHT-HHHHHHHHHHHS-TTS-EEE-
T ss_pred cceeecccCCCcccCHHHHHHHhCcHHHHHHHHhcCCcccCcccC
Confidence 9999999999999999999999999999999995 5559999997
No 21
>KOG0433 consensus Isoleucyl-tRNA synthetase [Translation, ribosomal structure and biogenesis]
Probab=100.00 E-value=1.7e-127 Score=1051.21 Aligned_cols=699 Identities=24% Similarity=0.399 Sum_probs=617.6
Q ss_pred CCCCCh-hhHHHHHHHHHhcCCCCCCCC-CCCCCEEEeCCCCCCCCCCcchhhHHHHHHHHHHHHHHHCCCcccccCCCC
Q 003578 60 PKTFDF-TSEERIYNWWESQGYFKPNFE-RGSDPFVISMPPPNVTGSLHMGHAMFVTLEDIMVRYHRMKGRPTLWLPGTD 137 (809)
Q Consensus 60 ~~~~~~-~~E~~~~~~W~~~~~f~~~~~-~~~~~f~i~~~pPy~nG~lHiGH~~~~~~~Di~~Ry~rm~G~~V~~~~G~D 137 (809)
|..++. ..+.+.++-|+..+++....+ .++..|++.+ +||.||||||+|+|++||+.||+-++|.+|+|++|||
T Consensus 27 ~v~~Ns~gr~~q~~evi~~~~~~~~qls~~q~~~f~L~d----anG~lhlghalnkILkdIinr~~laqg~~alyvpGwD 102 (937)
T KOG0433|consen 27 LVHFNSTGRIGQVIEVIQPPEILSSQLSDQQRVEFELKD----ANGNLHLGHALNKILKDIINRILLAQGKSALYVPGWD 102 (937)
T ss_pred ccccccccchHHHHHHhCChHHHHHHHhhccCceEEEec----cCCCccchHHHHHHHHHHHHHHHHhcCceeccCCCCC
Confidence 344665 568889999999888876543 4578899999 9999999999999999999999999999999999999
Q ss_pred CCCCchHH-HHHHHHHHcCCCccccCHHHHHHHHHHHHHHHHHHHHHHHHHhcccccCCCccccCChhhHHHHHHHHHHH
Q 003578 138 HAGIATQL-VVEKMLAAEGIKRVELSRDEFTKRVWEWKEKYGGTITSQIKRLGASCDWTRERFTLDEQLSRAVVEAFIRL 216 (809)
Q Consensus 138 ~~Gl~~~~-~~e~~~~~~g~~~~~~~~~~f~~~~~~~~~~~~~~~~~~l~~lgi~~Dw~~~~~T~d~~~~~~v~~~f~~L 216 (809)
|||||+|. ++-+.+. .....++.-|.+++++.++++.++.+++.|+|+|+..||.++|.|+||+|.....++|.+|
T Consensus 103 chGLPiEs~kalssl~---~~~~~~s~leiR~~Ar~fA~~AIk~Q~e~F~r~gv~aDW~n~Y~T~~~~ye~aQL~iF~~l 179 (937)
T KOG0433|consen 103 CHGLPIESTKALSSLT---ESEGSRTPLEIRAKARIFADEAIKKQMEAFRRWGVTADWENPYVTKSPSYEAAQLDIFAKL 179 (937)
T ss_pred cCCCchHHHHHhhhhh---hccccCCcHHHHHHHHHHHHHHHHHHHHHHHHheeeccCCCceeecChHHHHHHHHHHHHH
Confidence 99999984 5444332 2235566778899999999999999999999999999999999999999999999999999
Q ss_pred HHcCceeecCcccccCCCCCcccCcccccccc-CCCceEEEEEEecCC------------CeeEEEEecCCccccCCcEE
Q 003578 217 HEKGLIYQGSYMVNWSPNLQTAVSDLEVEYSE-EPGTLYYIKYRVAGR------------SDFLTIATTRPETLFGDVAL 283 (809)
Q Consensus 217 ~~~Gliy~~~~~v~w~p~~~t~lsd~Ev~~~~-~~~~~~~~~f~~~~~------------~~~l~v~Tt~petl~~~~av 283 (809)
++||||||+.+||+|+|..+|+||+.|+||.+ ..++++|++|++.+. +.|.+||||+||||++|.||
T Consensus 180 yekgLvyR~~KPVyWSpSSRTALAEaELEYn~nH~S~S~Y~~F~L~~~S~~~~~~~~~~~~iyaLVWTTTPWTlPsN~Ai 259 (937)
T KOG0433|consen 180 YEKGLVYRSFKPVYWSPSSRTALAESELEYNDNHQSTSAYFRFKLINFSSSAHSEDSKIPQIYALVWTTTPWTLPSNNAI 259 (937)
T ss_pred HhccceeccCCcceecCcchhhhhhhhccCCcCCcceeEEEEEeccCCccccccCCCccCcEEEEEEeCCCcccccccee
Confidence 99999999999999999999999999999977 568899999998642 27899999999999999999
Q ss_pred EECCCCch-------------h--------------------------hhcccCeeecCCCCCCeeeEEecCCccccCCC
Q 003578 284 AVNPQDEH-------------Y--------------------------SQFIGMMAIVPMTYGRHVPIISDKYVDKEFGT 324 (809)
Q Consensus 284 ~v~p~~~~-------------y--------------------------~~l~g~~~~~P~~~~~~vpi~~~~~V~~~~GT 324 (809)
++||+.++ | ..|.|.+|.||+......|++.+++|+++.||
T Consensus 260 ~~n~~~~Yslv~~~~~~~~~~ylvas~L~~~fe~~~~~k~~i~~t~~g~~L~~~~Y~~pl~~~~~~P~l~g~hVT~~~GT 339 (937)
T KOG0433|consen 260 SVNSAIQYSLVQFDNNPTSTFYLVASKLLEEFEKSSDRKCKIVGTVKGANLIGRRYKHPLHNELGLPILEGPHVTDTVGT 339 (937)
T ss_pred eeccccceEEEEeccCCcceEEEEccchhhhhhhhcCcceeeeeecchhhccCceecCcCccccCCccccccceecCccc
Confidence 99998653 1 25789999999988899999999999999999
Q ss_pred CceeecCCCChhhHHHHHHhCCCceeecCCCCccccccc-ccCCCCHH-HHHHHHHHHHHHCCCeeeeecccccCccccc
Q 003578 325 GVLKISPGHDHNDYLLARKLGLPILNVMNKDGTLNEVAG-LFRGLDRF-EARKKLWSDLEETGLAVKKEPHTLRVPRSQR 402 (809)
Q Consensus 325 G~v~~~P~h~~~D~~~~~~~~l~~~~~~~~~G~~~~~~g-~~~G~~~~-~a~~~i~~~L~~~g~~~~~~~~~~~~p~c~r 402 (809)
|+||++||||++||.++.++|||+.+++|++|+++.++| .+.|+.|. |..+.|+..|. +.+++.+++.|+||+.||
T Consensus 340 GLVHTAP~HG~eDYlv~l~~~l~~~s~VD~~G~yT~ea~~~l~Gk~VL~eG~k~vl~~l~--~~iv~~sky~HsYPYDWR 417 (937)
T KOG0433|consen 340 GLVHTAPAHGFEDYLVAISKGLRVESFVDSRGCYTREAGHDLDGKEVLGEGQKIVLRLLN--HDIVHVSKYVHSYPYDWR 417 (937)
T ss_pred ceeecCCCCChHHHHHHhhcCCCcccccCCCCceecccccccccchhhccccHhHHHHHh--hhhhhhhcccccCCcccc
Confidence 999999999999999999999999999999999999998 79999998 56677888887 888999999999999999
Q ss_pred CCCeeEEeeccceeeeccHHHHHHHHHHhcCCceEecchhHHHHHHHHhcCCceeeeccccccceeeEEEEcCCcccEEE
Q 003578 403 GGEVIEPLVSKQWFVTMEPLAEKALHAVEKGELTIMPERFEKIYNHWLSNIKDWCISRQLWWGHRIPVWYIVGKEEEYIV 482 (809)
Q Consensus 403 ~~~~i~~~~~~qwfl~~~~~~~~~~~~~~~~~~~~~P~~~~~~~~~~l~~l~Dw~ISRq~~WG~piP~~~~~~~~~~~~~ 482 (809)
+++|++.|.++|||+++++++..+.++++ +++|.|.....++..++..+++|||||||.||+|||++|..+ .+.|+.
T Consensus 418 TKKPvIiRAseQWFi~~e~~k~~A~~al~--~Vk~~P~~~~~rl~~~~~~R~~WCISRQR~WGvPIP~ly~k~-~~~~l~ 494 (937)
T KOG0433|consen 418 TKKPVIIRASEQWFIDVEEIKKRASMALD--DVKVAPGDSDLRLKQLVTTRPSWCISRQRVWGVPIPALYDKN-GGSYLS 494 (937)
T ss_pred cCCceEEecchhheeeHHhhhhHHHHHHh--hceeCCcchHHHHHHHHcCCCcceeeeccccCCcceeEEecC-CCceee
Confidence 99999999999999999999999999998 699999999999999999999999999999999999999865 244433
Q ss_pred cCC---------------------hhHHHHHHhh-hc-CCCccccccCCccceeecccCccceecCCCCCChhhhhhcCC
Q 003578 483 ARN---------------------ADEALEKAHQ-KY-GKNVEIYQDPDVLDTWFSSALWPFSTLGWPDVSADDFKKFYP 539 (809)
Q Consensus 483 ~~~---------------------~~~~~~~~~~-~~-~~~~~~~~~~dvld~Wfds~~~~~~~~~~~~~~~~~~~~~~p 539 (809)
... +++.+....- .. .....+.+.+|+||+|||||..+-..++. +.-.+
T Consensus 495 ns~~~~h~~~~~eqeGsD~Ww~~~~eellpe~~~~e~~~~a~ey~kgtDimDVWFDSGssWs~v~~~--------~~~~~ 566 (937)
T KOG0433|consen 495 NSLIEWHAKLTREQEGSDVWWEIDVEELLPEEEVREIPDIASEYKKGTDIMDVWFDSGSSWSAVLDN--------EREHV 566 (937)
T ss_pred hHHHHHHHHHHHHHhCCcceEeCChhHhCcHhhhcccchhHHHhccCCceeeeEecCCCcceeecCC--------CCCcc
Confidence 222 2221111000 00 11245788999999999999766555542 22357
Q ss_pred CcEEEeeehhHHhHHHHHHHHHHHhcCCCCceeEEEeeeEEccCCCcccccccCccChhhHHHh------hCCchHHHHH
Q 003578 540 TTMLETGHDILFFWVARMVMMGIEFTGSVPFSHVYLHGLIRDSQGRKMSKTLGNVIDPIDTIKE------FGADALRFTI 613 (809)
Q Consensus 540 ~d~~~~G~Di~~~w~~~~~~~~~~l~~~~Pf~~v~~hg~vld~~G~KMSKS~GN~I~p~dli~~------ygaD~lR~~l 613 (809)
+|++++|.||+++||+++++++++..+++||++|++|||.+|++|.|||||+||||+|+.+++. ||+|+||||+
T Consensus 567 aDv~LEG~DQ~rGWFQSsLLTsvA~q~kAPYk~vivHGFtlDE~G~KMSKSlGNVidP~~v~~G~~k~payGaD~LR~WV 646 (937)
T KOG0433|consen 567 ADVYLEGVDQFRGWFQSSLLTSVAVQNKAPYKKVIVHGFTLDENGNKMSKSLGNVVDPTMVTDGSLKQPAYGADGLRFWV 646 (937)
T ss_pred eeeEEecchhcchHHHHHHHHHHHHhccCCchheeeeeeEecCCccchhhcccCcCCHHHHhCCcccCCCccccceeeee
Confidence 9999999999999999999999999999999999999999999999999999999999999997 9999999999
Q ss_pred hhCCCCCcccccHHHHHHHHHHHHHHHHHHHHHHHhCCCCCchhhHHHHhhhccchhhhhcCCCchhHHHHHHHHHHHHH
Q 003578 614 SLGTAGQDLSLSIERLTANKAFTNKLWNAGKFILQNLPSQNDISRWEILLAYKFDEEECLCKAPLPECWVVSKLHMLIDT 693 (809)
Q Consensus 614 l~~~~~~d~~fs~~~l~~~~~~~~kl~N~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~~d~~il~~l~~~~~~ 693 (809)
+.+....|+...+..+....+.+.+++|++||+++++.++.... ...+..++...|++++.+|.+++++
T Consensus 647 A~~~~t~d~~iGp~il~qv~e~l~K~R~T~RfllGnl~d~~~~~-----------~~~p~~dl~~iDq~~L~ql~~~~~~ 715 (937)
T KOG0433|consen 647 AGSENTGESKIGPKILDQVDEKLIKFRNTFRFLLGNLQDFDGKQ-----------VKFPLKDLRYIDQYMLQQLDAIVKR 715 (937)
T ss_pred ecccccCceecCHHHHHHHHHHHHHHHhHHHHHhhcccccCCcc-----------ccccchhhhhhhHHHHHHHHHHHHH
Confidence 98888999999999999999999999999999999998765421 1234567778899999999999999
Q ss_pred HHHHhhcCChHHHHHHHHHHHHHhhHHHHHHHhhhhhhcCC-CcHHHHHHHHHHHHHHHHHHHHhccchhHHHHHHHHHh
Q 003578 694 VTASYDKYFFGDVGRETYDFFWSDFADWYIEASKARLYRSE-YDSDAIIAQAVLLYIFENILKLLHPFMPFVTEELWQSL 772 (809)
Q Consensus 694 v~~a~e~~~f~~a~~~i~~f~~~~~~n~Yi~~~k~~l~~~~-~~~~~~~~~~~l~~vl~~l~~lL~P~~P~~aeeiw~~L 772 (809)
+.+.|++|+|+++++.+..|+.++++++|++..|+|+|++. +...|++++++|..++..+++.++||+||++||+||+|
T Consensus 716 i~e~Y~~Y~f~kVv~~lq~F~~~~lSa~YfdivKDRLY~~~~~s~~rrs~QttL~h~l~~l~~~iaPIlP~LaeEvwq~l 795 (937)
T KOG0433|consen 716 IIELYNDYKFRKVVNDLQQFLQRNLSAFYFDIVKDRLYCDKVGSESRRSAQTTLHHLLHNLAHIISPILPHLAEEVWQHL 795 (937)
T ss_pred HHHHHHhccHHHHHHHHHHHHHHHhhHHHHHHHhhhhhcCCCCcHHHHHHHHHHHHHHHHHHHHHccccHHHHHHHHHhC
Confidence 99999999999999999999999999999999999999975 34489999999999999999999999999999999999
Q ss_pred ccCCCceEecCCCCCCC
Q 003578 773 RKRKEALIVSPWPQTSL 789 (809)
Q Consensus 773 ~~~~~sv~~~~wP~~~~ 789 (809)
+...+-++...||..+.
T Consensus 796 P~~~~~~f~~k~~~l~s 812 (937)
T KOG0433|consen 796 PGSHEKIFRLKWEDLHS 812 (937)
T ss_pred CCCCCcccccCccccch
Confidence 95544599999999984
No 22
>PLN02563 aminoacyl-tRNA ligase
Probab=100.00 E-value=6.8e-128 Score=1154.48 Aligned_cols=622 Identities=29% Similarity=0.457 Sum_probs=520.4
Q ss_pred hcccCCCCCCCCCCCh-hhHHHHHHHHHhcCCCCCCC--CCCCCCEEEeCCCCCCCCC-CcchhhHHHHHHHHHHHHHHH
Q 003578 50 AAAENNKDTLPKTFDF-TSEERIYNWWESQGYFKPNF--ERGSDPFVISMPPPNVTGS-LHMGHAMFVTLEDIMVRYHRM 125 (809)
Q Consensus 50 ~~~~~~~~~~~~~~~~-~~E~~~~~~W~~~~~f~~~~--~~~~~~f~i~~~pPy~nG~-lHiGH~~~~~~~Di~~Ry~rm 125 (809)
....++..++++.|++ ++|++||++|+++++|+... +.++++|+++++||||||. |||||+++|+++|+++||+||
T Consensus 67 ~~~~~~~~~~~~~y~~~~iE~kwq~~W~e~~~f~~~~~~~~~k~k~~v~~~~PYpnG~~lHiGH~~~y~~~DviaRy~Rm 146 (963)
T PLN02563 67 STTAKTTPAAKRAYPFHEIEPKWQRYWEENRTFRTPDDVDTSKPKFYVLDMFPYPSGAGLHVGHPEGYTATDILARYKRM 146 (963)
T ss_pred hhhhhcccccCCCCCHHHHHHHHHHHHHhCCCccccccccCCCCCEEEEeCCCCCCCcccchhhHHHHHHHHHHHHHHHh
Confidence 4467778899999999 99999999999999999865 4457789999999999996 999999999999999999999
Q ss_pred CCCcccccCCCCCCCCchHHHHHHHHHHcCCCccccCHHHHHHHHHHHHHHHHHHHHHHHHHhcccccCCCccccCChhh
Q 003578 126 KGRPTLWLPGTDHAGIATQLVVEKMLAAEGIKRVELSRDEFTKRVWEWKEKYGGTITSQIKRLGASCDWTRERFTLDEQL 205 (809)
Q Consensus 126 ~G~~V~~~~G~D~~Gl~~~~~~e~~~~~~g~~~~~~~~~~f~~~~~~~~~~~~~~~~~~l~~lgi~~Dw~~~~~T~d~~~ 205 (809)
+||+|+|++|||+||+|+|. ++.+.|.+|. .|+.++++.|++||++||+++||+|+|.|+||+|
T Consensus 147 ~G~~Vl~~~G~D~~GlPiE~----~a~~~g~~p~------------~~~~~~i~~~~~q~~~lG~s~DW~r~~~T~dp~y 210 (963)
T PLN02563 147 QGYNVLHPMGWDAFGLPAEQ----YAIETGTHPK------------ITTLKNIARFRSQLKSLGFSYDWDREISTTEPEY 210 (963)
T ss_pred cCCeecccccccccCcHHHH----HHHHcCCChH------------HhHHHHHHHHHHHHHHhCcEeeCCCCeecCCHHH
Confidence 99999999999999999654 4456787664 5678999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHcCceeecCcccccCCCCCcccCccccccc--cCCCc-------------------------------
Q 003578 206 SRAVVEAFIRLHEKGLIYQGSYMVNWSPNLQTAVSDLEVEYS--EEPGT------------------------------- 252 (809)
Q Consensus 206 ~~~v~~~f~~L~~~Gliy~~~~~v~w~p~~~t~lsd~Ev~~~--~~~~~------------------------------- 252 (809)
++++||+|.+|+++||||++.++|+|||.|+|+||++||++. +..+.
T Consensus 211 ~~~~q~~F~~L~~~GliY~~~~~v~wcp~~~T~La~~Ev~~~~~~~~~~~~~~~~~~q~f~~it~ya~~L~~~l~~~~wp 290 (963)
T PLN02563 211 YKWTQWIFLQLLKRGLAYQAEVPVNWCPALGTVLANEEVVDGLSERGGHPVIRKPMRQWMLKITAYADRLLEDLDDLDWP 290 (963)
T ss_pred HHHHHHHHHHHHHCCCEEeeeeeeeecCCcCCCCCHHHhhcCCCcCCCCceEEEecceeEEecchhHHHHHHhhhhcCCC
Confidence 999999999999999999999999999999999999999873 22222
Q ss_pred ---------------eEEEEEEecC-----CCeeEEEEecCCccccCCcEEEECCCCc---------------hhhh---
Q 003578 253 ---------------LYYIKYRVAG-----RSDFLTIATTRPETLFGDVALAVNPQDE---------------HYSQ--- 294 (809)
Q Consensus 253 ---------------~~~~~f~~~~-----~~~~l~v~Tt~petl~~~~av~v~p~~~---------------~y~~--- 294 (809)
.++|+|++.+ .+.+++|||||||||+|+++|+|||+++ +|..
T Consensus 291 ~~v~~~q~nwiG~s~g~~i~F~~~~~~~~~~~~~l~V~TTrPeTl~g~t~iav~p~~~yv~~~~~~~~~~~v~~y~~~~~ 370 (963)
T PLN02563 291 ESIKEMQRNWIGRSEGAELDFSVLDGEGKERDEKITVYTTRPDTLFGATYLVVAPEHPLLSSLTTAEQKEAVEEYVDAAS 370 (963)
T ss_pred HHHHHHHHHhccccceEEEEEEecCccccCCCCEEEEEeCCChHHhhccEEEECCCChhhHhhhcccchHHHHHHHHHHh
Confidence 4788999875 2478999999999999999999999996 2321
Q ss_pred -----------------cccCeeecCCCCCCeeeEEecCCccccCCCCceeecCCCChhhHHHHHHhCCCceeecCC---
Q 003578 295 -----------------FIGMMAIVPMTYGRHVPIISDKYVDKEFGTGVLKISPGHDHNDYLLARKLGLPILNVMNK--- 354 (809)
Q Consensus 295 -----------------l~g~~~~~P~~~~~~vpi~~~~~V~~~~GTG~v~~~P~h~~~D~~~~~~~~l~~~~~~~~--- 354 (809)
+.|.++.||+ .++.+||+.++||++++|||+||+|||||++||++|++||||++++++.
T Consensus 371 ~~~~~~~~~~~~~k~g~~~g~~~~~P~-~~~~iPI~~ad~V~~~~GTGaVm~~PaHd~~D~~~a~k~~Lpi~~vI~~~d~ 449 (963)
T PLN02563 371 RKSDLERTELQKEKTGVFTGSYAINPA-TGEAIPIWVADYVLGSYGTGAIMAVPAHDTRDFEFAQKFDLPIKWVVKPADG 449 (963)
T ss_pred chhHHhhhhccceecccccCcEEeccC-CCCeeEEEEecccCCCCCCCeEEEcCCCCHHHHHHHHHcCCCceeeeccCcc
Confidence 4689999999 5899999999999999999999999999999999999999999999842
Q ss_pred -----------CCcccccccc----cCCCCHHHHHHHHHHHHHHCCCeeeeecccccCcccccCCCeeEEeeccceeeec
Q 003578 355 -----------DGTLNEVAGL----FRGLDRFEARKKLWSDLEETGLAVKKEPHTLRVPRSQRGGEVIEPLVSKQWFVTM 419 (809)
Q Consensus 355 -----------~G~~~~~~g~----~~G~~~~~a~~~i~~~L~~~g~~~~~~~~~~~~p~c~r~~~~i~~~~~~qwfl~~ 419 (809)
+|.+. +.|. |+|+++++|+++|+++|++.|++.+
T Consensus 450 ~~~~~~~~y~~~G~l~-ns~~~~~~~~Gl~~~eA~~~Ii~~L~~~g~~~~------------------------------ 498 (963)
T PLN02563 450 NEDDAEKAYTGEGVIV-NSSSSGLDINGLSSKEAAKKVIEWLEETGNGKK------------------------------ 498 (963)
T ss_pred ccccccccccCceeEe-cCCCcccccCCcCHHHHHHHHHHHHHhCCCCCC------------------------------
Confidence 23333 2344 9999999999999999999999732
Q ss_pred cHHHHHHHHHHhcCCceEecchhHHHHHHHHhcCCceeeeccccccceeeEEEEcCCcccEEEcCChhHH----------
Q 003578 420 EPLAEKALHAVEKGELTIMPERFEKIYNHWLSNIKDWCISRQLWWGHRIPVWYIVGKEEEYIVARNADEA---------- 489 (809)
Q Consensus 420 ~~~~~~~~~~~~~~~~~~~P~~~~~~~~~~l~~l~Dw~ISRq~~WG~piP~~~~~~~~~~~~~~~~~~~~---------- 489 (809)
+++| +|+|||||||||||+|||+|||+.+++.+.+. .+++
T Consensus 499 --------------~v~y--------------~lrDW~ISRQRyWG~PIPi~~c~~cg~~v~v~--e~~Lpv~lpe~~~~ 548 (963)
T PLN02563 499 --------------KVNY--------------KLRDWLFARQRYWGEPIPVVFLEDSGEPVPVP--ESDLPLTLPELDDF 548 (963)
T ss_pred --------------eeEe--------------cCCCceEeeecccCCceEEEEEcCCCcEEecc--hHhCcccchhhhhc
Confidence 1122 58999999999999999999997532222221 1110
Q ss_pred ---------HHHHh----hhc-CCCccccccCCccceeecccCccceecCCCCCCh-----hhhhhcCCCcEEEeeehhH
Q 003578 490 ---------LEKAH----QKY-GKNVEIYQDPDVLDTWFSSALWPFSTLGWPDVSA-----DDFKKFYPTTMLETGHDIL 550 (809)
Q Consensus 490 ---------~~~~~----~~~-~~~~~~~~~~dvld~Wfds~~~~~~~~~~~~~~~-----~~~~~~~p~d~~~~G~Di~ 550 (809)
+.... ..| .++..++||+|||||||+|+ ||+.++.+|.++. ..+++|+|+|+|++|.|+.
T Consensus 549 ~~~~~g~~pl~~~~~~~~~~~p~cg~~~~RetDtmDtw~~Ss-wy~~r~~~p~~~~~~~~~~~~~~w~PvD~yigG~dha 627 (963)
T PLN02563 549 TPTGTGEPPLAKAVSWVNTVDPSSGKPARRETNTMPQWAGSC-WYYLRFMDPKNSNALVDKEKEKYWMPVDLYVGGAEHA 627 (963)
T ss_pred ccCCCCCCchhcchhhhcCcCcCCCCCcEECCCcCCchhhcc-HHHHHHhCCCccccccCHHHHhCcCCCcEeeccHHHH
Confidence 11000 012 12457899999999999997 8888888988642 3345799999999999984
Q ss_pred -------HhHHHHHHHHHHHhcCCCCceeEEEeeeEEc---------cCCC-----------------------------
Q 003578 551 -------FFWVARMVMMGIEFTGSVPFSHVYLHGLIRD---------SQGR----------------------------- 585 (809)
Q Consensus 551 -------~~w~~~~~~~~~~l~~~~Pf~~v~~hg~vld---------~~G~----------------------------- 585 (809)
|||+.+|+.+++ +.+++||+++++||||++ .+|+
T Consensus 628 ilHLlY~Rfw~~~l~~~g~-~~~~ePfk~ll~qGmVl~~~~~~~~~d~~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 706 (963)
T PLN02563 628 VLHLLYARFWHKVLYDIGV-VSTKEPFQCLVNQGMILGEVEYTAFKDSDGEYVSADTADRLGELQQEKIPEEKVIKSGDS 706 (963)
T ss_pred hhHhHHHHHHHHHHHHhhc-cCCcccHHHHhccceeecCccccceecCCCcCcccccccccccccccccccccccccccc
Confidence 899999999998 577899999999999997 6777
Q ss_pred ----------------cccccccCccChhhHHHhhCCchHHHHHhhCCC-CCcccccHHHHHHHHHHHHHHHHHHHHHHH
Q 003578 586 ----------------KMSKTLGNVIDPIDTIKEFGADALRFTISLGTA-GQDLSLSIERLTANKAFTNKLWNAGKFILQ 648 (809)
Q Consensus 586 ----------------KMSKS~GN~I~p~dli~~ygaD~lR~~ll~~~~-~~d~~fs~~~l~~~~~~~~kl~N~~~~~~~ 648 (809)
|||||+||+|+|.++|++||||++|||+++.++ .+|.+|+.+.+.+..++++++||++.....
T Consensus 707 ~~~~~~~~~~~~~~~eKMSKSKGNvVdP~eiI~kYGADaLRl~ll~~ap~~dd~~w~~~~V~g~~rfL~rlwn~~~~~~~ 786 (963)
T PLN02563 707 FVLKDDPSIRLIARAHKMSKSRGNVVNPDDVVSEYGADSLRLYEMFMGPLRDSKTWSTSGVEGVHRFLGRTWRLVVGAPL 786 (963)
T ss_pred cccccCCcccccccccccccccCCcCCHHHHHHHcCcHHHHHHHHhCCCcccccccCHHHHHHHHHHHHHHHHHHHHhhh
Confidence 999999999999999999999999999998888 999999999999999999999998754311
Q ss_pred hCCCCCchhhHHHHhhhccchhhhhcCCCchhHHHHHHHHHHHHHHHHHhhcCChHHHHHHHHHHHHHhhHHHHHHHhhh
Q 003578 649 NLPSQNDISRWEILLAYKFDEEECLCKAPLPECWVVSKLHMLIDTVTASYDKYFFGDVGRETYDFFWSDFADWYIEASKA 728 (809)
Q Consensus 649 ~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~~d~~il~~l~~~~~~v~~a~e~~~f~~a~~~i~~f~~~~~~n~Yi~~~k~ 728 (809)
....+.. .. .......|+|++++++.++++++++|++|+|++|++++|+|++ .+.++
T Consensus 787 ~~~~~~~-------------~~--~~~~~~~d~~ll~kl~~~ikkVte~~e~y~FntAi~~lmef~n-~l~~~------- 843 (963)
T PLN02563 787 PDGSFRD-------------GT--VVTDEEPSLEQLRLLHKCIAKVTEEIESTRFNTAISAMMEFTN-AAYKW------- 843 (963)
T ss_pred cccccCc-------------cc--cccCCcchHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH-HHhCc-------
Confidence 1100100 00 0011246889999999999999999999999999999999984 33221
Q ss_pred hhhcCCCcHHHHHHHHHHHHHHHHHHHHhccchhHHHHHHHHHhccCCCceEecCCCCCCC
Q 003578 729 RLYRSEYDSDAIIAQAVLLYIFENILKLLHPFMPFVTEELWQSLRKRKEALIVSPWPQTSL 789 (809)
Q Consensus 729 ~l~~~~~~~~~~~~~~~l~~vl~~l~~lL~P~~P~~aeeiw~~L~~~~~sv~~~~wP~~~~ 789 (809)
+ .....+++.+++||+|||||+|||||++|+.. +||+.++||+.++
T Consensus 844 ------~--------~~~~~~l~~ll~LLaPf~PhiaEELW~~Lg~~-~sv~~~~WP~~d~ 889 (963)
T PLN02563 844 ------D--------KVPREAIEPFVLLLSPYAPHLAEELWFRLGHS-NSLAYEPWPEANP 889 (963)
T ss_pred ------h--------HHHHHHHHHHHHHHHhhhhhHHHHHHHHcCCC-CeeeeCCCCCCCH
Confidence 0 13457899999999999999999999999864 6999999999873
No 23
>TIGR00396 leuS_bact leucyl-tRNA synthetase, eubacterial and mitochondrial family. The leucyl-tRNA synthetases belong to two families so broadly different that they are represented by separate models. This model includes both eubacterial and mitochondrial leucyl-tRNA synthetases. It generates higher scores for some valyl-tRNA synthetases than for any archaeal or eukaryotic cytosolic leucyl-tRNA synthetase. Note that the enzyme from Aquifex aeolicus is split into alpha and beta chains; neither chain is long enough to score above the trusted cutoff, but the alpha chain scores well above the noise cutoff. The beta chain must be found by a model and search designed for partial length matches.
Probab=100.00 E-value=1.2e-127 Score=1152.66 Aligned_cols=613 Identities=28% Similarity=0.460 Sum_probs=517.8
Q ss_pred CCh-hhHHHHHHHHHhcCCCCCCCCCCCCCEEEeCCCCCCCCCCcchhhHHHHHHHHHHHHHHHCCCcccccCCCCCCCC
Q 003578 63 FDF-TSEERIYNWWESQGYFKPNFERGSDPFVISMPPPNVTGSLHMGHAMFVTLEDIMVRYHRMKGRPTLWLPGTDHAGI 141 (809)
Q Consensus 63 ~~~-~~E~~~~~~W~~~~~f~~~~~~~~~~f~i~~~pPy~nG~lHiGH~~~~~~~Di~~Ry~rm~G~~V~~~~G~D~~Gl 141 (809)
||+ ++|++||++|+++++|++..+.++++|+++++||||||.|||||+++++++|+++||+||+||+|+|++|||+||+
T Consensus 1 y~~~~iE~kwq~~W~~~~~f~~~~~~~k~k~~v~~~pPy~nG~lHiGH~~~~~~~Dvi~Ry~rm~G~~V~~~~G~D~~Gl 80 (842)
T TIGR00396 1 YNHIEIEEKWQQKWKENKVFKFTDDSNKPKYYILDMFPYPSGALHMGHVRNYTITDVLSRYYRMKGYNVLHPMGWDAFGL 80 (842)
T ss_pred CCHHHHHHHHHHHHHhcCCcccCCCCCCCCEEEEcCCCCCCCccccchhHHHHHHHHHHHHHHhcCCceeccCCcCCCCh
Confidence 788 8999999999999999988776678899999999999999999999999999999999999999999999999999
Q ss_pred chHHHHHHHHHHcCCCccccCHHHHHHHHHHHHHHHHHHHHHHHHHhcccccCCCccccCChhhHHHHHHHHHHHHHcCc
Q 003578 142 ATQLVVEKMLAAEGIKRVELSRDEFTKRVWEWKEKYGGTITSQIKRLGASCDWTRERFTLDEQLSRAVVEAFIRLHEKGL 221 (809)
Q Consensus 142 ~~~~~~e~~~~~~g~~~~~~~~~~f~~~~~~~~~~~~~~~~~~l~~lgi~~Dw~~~~~T~d~~~~~~v~~~f~~L~~~Gl 221 (809)
|+|.++ .+.|+++. +|++++++.|++||++||+++||+++|.|+||+|++++|++|.+|+++|+
T Consensus 81 pie~~a----~~~g~~p~------------~~~~~~~~~~~~~~~~lG~~~Dw~~~~~T~d~~y~~~~~~~F~~L~~kGl 144 (842)
T TIGR00396 81 PAENAA----IKRGIHPA------------KWTYENIANMKKQLQALGFSYDWDREIATCDPEYYKWTQWIFLELFEKGL 144 (842)
T ss_pred HHHHHH----HHcCCCHH------------HHHHHHHHHHHHHHHHhCCcccCCCCcccCCHHHHHHHHHHHHHHHHCCC
Confidence 976554 45687764 67889999999999999999999999999999999999999999999999
Q ss_pred eeecCcccccCCCCCcccCcccccccc---C-----------------------------------------------CC
Q 003578 222 IYQGSYMVNWSPNLQTAVSDLEVEYSE---E-----------------------------------------------PG 251 (809)
Q Consensus 222 iy~~~~~v~w~p~~~t~lsd~Ev~~~~---~-----------------------------------------------~~ 251 (809)
||++.++|+|||.|+|+|||+||++.. . .+
T Consensus 145 iy~~~~~v~wcp~~~t~La~~ev~~~g~~~~~g~~v~~~~~~~~f~~i~~~~~~l~~~l~~~~~wp~~v~~~q~~wig~s 224 (842)
T TIGR00396 145 AYVKEADVNWCPNDGTVLANEQVDSDGRSWRGGTPVEKKELKQWFLKITAYAEELLNDLEELDHWPESVKEMQRNWIGKS 224 (842)
T ss_pred eEeeccceEEeCCCCCCccHHHHhhcCccccCCCcceEeecceeEEehhhhHHHHHHHHhhhccccHHHHHHHHhccccc
Confidence 999999999999999999999995321 1 13
Q ss_pred ceEEEEEEecCCCeeEEEEecCCccccCCcEEEECCCCchhh---------------------------------hcccC
Q 003578 252 TLYYIKYRVAGRSDFLTIATTRPETLFGDVALAVNPQDEHYS---------------------------------QFIGM 298 (809)
Q Consensus 252 ~~~~~~f~~~~~~~~l~v~Tt~petl~~~~av~v~p~~~~y~---------------------------------~l~g~ 298 (809)
..++++|++.+.+.+++|||||||||+|++||||||+++++. .++|.
T Consensus 225 ~g~~i~f~~~~~~~~l~v~TTrP~Tl~g~~~iav~p~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~g~~~g~ 304 (842)
T TIGR00396 225 EGVEITFKIADHKEKIAVFTTRPDTIFGVTYLALAPEHPLVEKIAENNPKVAAFIKKILQKTTTERTKETKLKKGVFTGI 304 (842)
T ss_pred ceEEEEEEcCCCCCEEEEEeCCcHHhhhccEEEECCCCHHHHhhhcchHHHHHHHHHHhccCchhhhhhhcccccEecCC
Confidence 357889998876689999999999999999999999997542 27899
Q ss_pred eeecCCCCCCeeeEEecCCccccCCCCceeecCCCChhhHHHHHHhCCCceeecCC------------CCcccccccccC
Q 003578 299 MAIVPMTYGRHVPIISDKYVDKEFGTGVLKISPGHDHNDYLLARKLGLPILNVMNK------------DGTLNEVAGLFR 366 (809)
Q Consensus 299 ~~~~P~~~~~~vpi~~~~~V~~~~GTG~v~~~P~h~~~D~~~~~~~~l~~~~~~~~------------~G~~~~~~g~~~ 366 (809)
++.||+ .++.+||+.++||++++|||+||+|||||++||++|++||||++++++. +|.+++ .|.|+
T Consensus 305 ~~~~P~-~~~~ipi~~~~~V~~~~GTG~V~~~Pahd~~D~~~~~k~~L~i~~vi~~~~~~~~~~~~~~~G~~~~-~~~~~ 382 (842)
T TIGR00396 305 KAIHPL-TGEKIPIWVANYVLASYGTGAVMGVPAHDERDFEFAQKYKLPIKVVIDPAGKNLKTQAFTEDGVLVN-SGEFN 382 (842)
T ss_pred EEECCC-CCCEeEEEEeCcccCCCCCCeEEEcCCCCHHHHHHHHHhCCCcceeeCCcccccccccccCCceEec-chhcC
Confidence 999999 6899999999999999999999999999999999999999999999984 677774 48999
Q ss_pred CCCHHHHHHHHHHHHHHCCCeeeeecccccCcccccCCCeeEEeeccceeeeccHHHHHHHHHHhcCCceEecchhHHHH
Q 003578 367 GLDRFEARKKLWSDLEETGLAVKKEPHTLRVPRSQRGGEVIEPLVSKQWFVTMEPLAEKALHAVEKGELTIMPERFEKIY 446 (809)
Q Consensus 367 G~~~~~a~~~i~~~L~~~g~~~~~~~~~~~~p~c~r~~~~i~~~~~~qwfl~~~~~~~~~~~~~~~~~~~~~P~~~~~~~ 446 (809)
|+++.+|+++|+++|+++|++.+. +.
T Consensus 383 Gl~~~~A~~~Ii~~L~~~g~~~~~----------------v~-------------------------------------- 408 (842)
T TIGR00396 383 GLNSSEAREAIIAMLEKEGKGKRK----------------VN-------------------------------------- 408 (842)
T ss_pred CCCHHHHHHHHHHHHHHcCCCCce----------------EE--------------------------------------
Confidence 999999999999999999995421 11
Q ss_pred HHHHhcCCceeeeccccccceeeEEEEcCCcccEEEcCCh-----h----------HHHHHHh----hhc-CCCcccccc
Q 003578 447 NHWLSNIKDWCISRQLWWGHRIPVWYIVGKEEEYIVARNA-----D----------EALEKAH----QKY-GKNVEIYQD 506 (809)
Q Consensus 447 ~~~l~~l~Dw~ISRq~~WG~piP~~~~~~~~~~~~~~~~~-----~----------~~~~~~~----~~~-~~~~~~~~~ 506 (809)
.+|+|||||||||||+|||+|||+. ++.+.+..+. . ..+.... ..| .++..++|+
T Consensus 409 ----yrlrDW~ISRQRyWG~PIPi~~~~~-~g~~~v~~~~lp~~l~~~~~~~~~~~~pl~~~~~~~~~~cp~cg~~~~re 483 (842)
T TIGR00396 409 ----YRLRDWLFSRQRYWGEPIPIIHCED-GGAVPVPEEDLPVILPELVNYDPDGNSPLSRIQEWVNVTCPSCGKPALRE 483 (842)
T ss_pred ----eecccceeecccccCCceEEEEECC-CCeEeCcchhcchhhhhhhhccCCCCCchhhhhhhhcCcCccCCCCcEeC
Confidence 1578999999999999999999964 2333222110 0 0111111 122 124468999
Q ss_pred CCccceeecccCccceecCCCCCC-----hhhhhhcCCCcEEEeeehhH--HhHHHHH-----HHHHHHhcCCCCceeEE
Q 003578 507 PDVLDTWFSSALWPFSTLGWPDVS-----ADDFKKFYPTTMLETGHDIL--FFWVARM-----VMMGIEFTGSVPFSHVY 574 (809)
Q Consensus 507 ~dvld~Wfds~~~~~~~~~~~~~~-----~~~~~~~~p~d~~~~G~Di~--~~w~~~~-----~~~~~~l~~~~Pf~~v~ 574 (809)
+|||||||||| ||+.++.+|.+. ++.+++|||+|+|++|+|+. |+|++|+ ...+. +.+++||++++
T Consensus 484 tDtmDtw~dSs-wy~~r~~~p~~~~~~~~~~~~~~~~PvD~yi~G~dhailHLlyaRf~~~~l~~~~~-~~~~~Pfk~l~ 561 (842)
T TIGR00396 484 TDTMDTFAGSS-WYYLRYLDPKNTDQPFDKEKAEYWLPVDLYIGGAEHAILHLLYARFWHKFLYDIGY-VSTKEPFKKLI 561 (842)
T ss_pred CCCCCCcccCC-HHHHHhhCCCCcCCCcChHHHhccCCCcEeeccHHHHHHHHHHHHHHHHHHHhccc-cCCCccHHHHh
Confidence 99999999998 999888777652 46789999999999999854 4444444 33332 56789999999
Q ss_pred EeeeEEc----cCCC---------------------------cccccccCccChhhHHHhhCCchHHHHHhhCC-CCCcc
Q 003578 575 LHGLIRD----SQGR---------------------------KMSKTLGNVIDPIDTIKEFGADALRFTISLGT-AGQDL 622 (809)
Q Consensus 575 ~hg~vld----~~G~---------------------------KMSKS~GN~I~p~dli~~ygaD~lR~~ll~~~-~~~d~ 622 (809)
+|||+++ .+|+ |||||+||+|+|.+++++||+|++|||+++.+ +++|+
T Consensus 562 ~~G~Vl~~~~~~~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~KMSKS~GN~v~p~~ii~~ygaDalRl~~l~~~~~~~d~ 641 (842)
T TIGR00396 562 NQGMVLGFYYPPNGKSPPDELTERDEKAKDKSGGELVVVGYEKMSKSKGNGIDPQEIVKKHGADALRLYIMFMGPIAASL 641 (842)
T ss_pred ccceEEeeeecCCCCccChhhhccccccccccCCcccccchhhhhhcCCCcCCHHHHHHHcCchHHHHHHHhcCCcCCCC
Confidence 9999998 8898 99999999999999999999999999999664 59999
Q ss_pred cccHHHHHHHHHHHHHHHHHHHHHHHhCCCCCchhhHHHHhhhccchhhhhcCCCchhHHHHHHHHHHHHHHHHHhhcCC
Q 003578 623 SLSIERLTANKAFTNKLWNAGKFILQNLPSQNDISRWEILLAYKFDEEECLCKAPLPECWVVSKLHMLIDTVTASYDKYF 702 (809)
Q Consensus 623 ~fs~~~l~~~~~~~~kl~N~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~~d~~il~~l~~~~~~v~~a~e~~~ 702 (809)
+|+++.+++.++++++|||+++++.+++.+... .+...++..|+|+++++++++++++++|++|+
T Consensus 642 ~~~~~~l~~~~~~l~kl~~~~~~~~~~~~~~~~---------------~~~~~l~~~d~~il~~l~~~i~~v~~~~e~y~ 706 (842)
T TIGR00396 642 EWNDSGLEGARRFLDRVWNLFYNILGELDGKTY---------------LTPTILEEAQKELRRDVHKFLKKVTEDLEKLE 706 (842)
T ss_pred ccCHHHHHHHHHHHHHHHHHHHHHHhhhccccc---------------CCcccCCHHHHHHHHHHHHHHHHHHHHHHhhh
Confidence 999999999999999999999987766532110 00122456899999999999999999999988
Q ss_pred -hHHHHHHHHHHHHHhhHHHHHHHhhhhhhcCCCcHHHHHHHHHHHHHHHHHHHHhccchhHHHHHHHHHhccCCCceEe
Q 003578 703 -FGDVGRETYDFFWSDFADWYIEASKARLYRSEYDSDAIIAQAVLLYIFENILKLLHPFMPFVTEELWQSLRKRKEALIV 781 (809)
Q Consensus 703 -f~~a~~~i~~f~~~~~~n~Yi~~~k~~l~~~~~~~~~~~~~~~l~~vl~~l~~lL~P~~P~~aeeiw~~L~~~~~sv~~ 781 (809)
|++|++++|+|+ +++++ |. . ..++..+++.+++||+||+||+|||||+.|+..+.||+.
T Consensus 707 ~fn~ai~~l~~f~-n~L~~-~~-----------~-------~~~l~~~l~~ll~lLaPf~PhiaEElW~~l~~~~~sv~~ 766 (842)
T TIGR00396 707 SFNTAISAMMILL-NALYK-AK-----------K-------DALYLEYLKGFLTVLSPFAPHLAEELWEKLGSEPFIIKQ 766 (842)
T ss_pred hHHHHHHHHHHHH-HHHHh-hh-----------h-------HHHHHHHHHHHHHHHhhhhhHHHHHHHHHhCCCCCeeec
Confidence 999999999998 34432 10 0 136889999999999999999999999999865458999
Q ss_pred cCCCCCCC
Q 003578 782 SPWPQTSL 789 (809)
Q Consensus 782 ~~wP~~~~ 789 (809)
++||+.++
T Consensus 767 ~~wP~~d~ 774 (842)
T TIGR00396 767 AKWPKVDE 774 (842)
T ss_pred CCCCCCCH
Confidence 99999873
No 24
>PRK12300 leuS leucyl-tRNA synthetase; Reviewed
Probab=100.00 E-value=7.7e-127 Score=1156.03 Aligned_cols=655 Identities=27% Similarity=0.450 Sum_probs=556.4
Q ss_pred CcchhhHHHHHHHHHHHHHHHCCCcccccCCCCCCCCchHHHHHHHHH----------H-cCCCccccCHHHHHHHHHHH
Q 003578 105 LHMGHAMFVTLEDIMVRYHRMKGRPTLWLPGTDHAGIATQLVVEKMLA----------A-EGIKRVELSRDEFTKRVWEW 173 (809)
Q Consensus 105 lHiGH~~~~~~~Di~~Ry~rm~G~~V~~~~G~D~~Gl~~~~~~e~~~~----------~-~g~~~~~~~~~~f~~~~~~~ 173 (809)
|||||+++++++|+++||+||+||+|+|++||||||+|||.++++... + .|++..++ ++| ..+++|
T Consensus 1 lHiGH~~~~t~~D~i~Ry~rm~G~~Vl~~~G~d~~GlPie~~ae~~~~~~~~~~~~~~~~~gi~~~~i--~~f-~~~~~~ 77 (897)
T PRK12300 1 LHVGHGRTYTIGDVIARYKRMRGYNVLFPMAFHVTGTPILGIAERIARGDPETIELYKSLYGIPEEEL--EKF-KDPEYI 77 (897)
T ss_pred CccchhHHHHHHHHHHHHHHcCCCcCCCCCCCCCCCcCHHHHHHHhhccchhHHHHHHHHcCCCHHHH--HHh-cCHHHH
Confidence 799999999999999999999999999999999999999998876321 1 25544433 345 347999
Q ss_pred HHHHHHHHHHHHHHhcccccCCCccccCChhhHHHHHHHHHHHHHcCceeecCcccccCCCCCcccCccccccccCCCc-
Q 003578 174 KEKYGGTITSQIKRLGASCDWTRERFTLDEQLSRAVVEAFIRLHEKGLIYQGSYMVNWSPNLQTAVSDLEVEYSEEPGT- 252 (809)
Q Consensus 174 ~~~~~~~~~~~l~~lgi~~Dw~~~~~T~d~~~~~~v~~~f~~L~~~Gliy~~~~~v~w~p~~~t~lsd~Ev~~~~~~~~- 252 (809)
++++.+.+++||++||+++||+|+|+|+||.|.++|+|+|.+|+++|+||++.++|+|||.|+|+|||+|+.+.+..++
T Consensus 78 ~~~~~~~~~~~~~~lG~~~DW~r~y~T~dp~y~~~v~w~F~~L~ekGliyrg~~~v~wcp~~~t~lad~e~~~~e~~~~~ 157 (897)
T PRK12300 78 VEYFSEEAKEDMKRIGYSIDWRREFTTTDPEYSKFIEWQFRKLKEKGLIVKGSHPVRYCPNDNNPVGDHDLLDGEEPEIV 157 (897)
T ss_pred HHHhHHHHHHHHHHhCcEEeCCCCeECCChhHHHHHHHHHHHHHHCCCEecCCEeeeeCCCCCCCchHHHHhcCCCCCcc
Confidence 9999999999999999999999999999999999999999999999999999999999999999999999998776644
Q ss_pred -eEEEEEEecCCCeeEEEEecCCccccCCcEEEECCCCc---------------------hhh-------------hccc
Q 003578 253 -LYYIKYRVAGRSDFLTIATTRPETLFGDVALAVNPQDE---------------------HYS-------------QFIG 297 (809)
Q Consensus 253 -~~~~~f~~~~~~~~l~v~Tt~petl~~~~av~v~p~~~---------------------~y~-------------~l~g 297 (809)
.++|+|+ .+.+.+++|||||||||+|++||||||+++ +|. +|+|
T Consensus 158 ~~~~ikf~-~~~~~~l~~~TtrPeTl~g~tai~V~P~~~Y~~~~~~~e~~i~a~~~~~~~~~~~~~~~~~~~~~G~~l~G 236 (897)
T PRK12300 158 EYTLIKFE-ESEDLILPAATLRPETIFGVTNLWVNPDATYVKAEVDGEKWIVSKEAAEKLSFQDRDVEIIEEIKGSELIG 236 (897)
T ss_pred eEEEEEEe-CCCceEEEEEECCcchhccceEEEECCCCcEEEEEECCEEEEEeHHHHHHHhcCcCCceEEEEeehHHhcC
Confidence 4689998 556689999999999999999999999997 243 6999
Q ss_pred CeeecCCCCCCeeeEEecCCccccCCCCceeecCCCChhhHHHHHHhC--------CCceeec-----------------
Q 003578 298 MMAIVPMTYGRHVPIISDKYVDKEFGTGVLKISPGHDHNDYLLARKLG--------LPILNVM----------------- 352 (809)
Q Consensus 298 ~~~~~P~~~~~~vpi~~~~~V~~~~GTG~v~~~P~h~~~D~~~~~~~~--------l~~~~~~----------------- 352 (809)
+++.+|+ .++.+||++++||++++|||+||+|||||++||+++++++ |+++.++
T Consensus 237 ~~~~~Pl-~~~~ipil~~~~V~~~~GTGvV~~~Pah~~~Dy~~~~~~~~~~~~~~~l~~i~ii~v~~~g~~~a~~~~~~~ 315 (897)
T PRK12300 237 KKVKNPV-TGKEVPILPADFVDPDNGTGVVMSVPAHAPYDYVALRDLKKNKELLDVIEPIPLIEVEGYGEFPAKEVVEKL 315 (897)
T ss_pred CEEECCC-CCCeEEEeccCeeecCCCeeeEEeCCCCCHHHHHHHHHhccccccccccCCcceEecCCcCcccHHHHHHHh
Confidence 9999999 5899999999999999999999999999999999999998 6654333
Q ss_pred ------C---------------CCCcccccccccCCCCHHHHHHHHHHHHHHCCCeeeeecccccCcccccCCCeeEEee
Q 003578 353 ------N---------------KDGTLNEVAGLFRGLDRFEARKKLWSDLEETGLAVKKEPHTLRVPRSQRGGEVIEPLV 411 (809)
Q Consensus 353 ------~---------------~~G~~~~~~g~~~G~~~~~a~~~i~~~L~~~g~~~~~~~~~~~~p~c~r~~~~i~~~~ 411 (809)
| .+|+|++++|.|+|++++|||++|+++|+++|++++.+.+.| .|+|+|||++++.+.
T Consensus 316 ~~~~~~d~~l~~a~~~~y~~~f~~G~~~~~~g~~~G~~v~eA~~~I~~~L~~~g~~~~~~~~~~-~~~~~R~~~~~i~~~ 394 (897)
T PRK12300 316 GIKSQEDPELEEATKEVYRAEFHKGVLKENTGEYAGKPVREAREKITKDLIEKGIADIMYEFSN-RPVYCRCGTECVVKV 394 (897)
T ss_pred CCCCccchhHHHHHHHhhhccccceEEeecccCcCCeEHHHHHHHHHHHHHHCCCeEEEEecCC-CCcCcCCCCEEEEEe
Confidence 3 489999999999999999999999999999999999888877 467779999999875
Q ss_pred -ccceeeecc--HHHHHHHHHHhcCCceEecchhHHHHHHHHhcCCceeeeccccccceeeE---EEEcCCccc--EEEc
Q 003578 412 -SKQWFVTME--PLAEKALHAVEKGELTIMPERFEKIYNHWLSNIKDWCISRQLWWGHRIPV---WYIVGKEEE--YIVA 483 (809)
Q Consensus 412 -~~qwfl~~~--~~~~~~~~~~~~~~~~~~P~~~~~~~~~~l~~l~Dw~ISRq~~WG~piP~---~~~~~~~~~--~~~~ 483 (809)
++||||+++ +++++++++++ +++|+|+..++++.+||++++||||||||+||+|||+ |.++..++. |+..
T Consensus 395 ~~~QWFi~~~~~~~k~~~~~~~~--~~~~~P~~~~~~~~~~l~~l~DW~ISRqr~WGtpiP~~~~w~~esl~ds~iY~~~ 472 (897)
T PRK12300 395 VKDQWFIDYSDPEWKELAHKALD--NMEIIPEEYRKEFENTIDWLKDRACARRRGLGTRLPWDEEWIIESLSDSTIYMAY 472 (897)
T ss_pred cCCceEEEcCcHHHHHHHHHHHc--cCEEECHHHHHHHHHHHhhhhhcceeeccccCCcCCccCCEEeeeccccchhhhH
Confidence 699999998 79999999996 6999999999999999999999999999999999996 776543222 2222
Q ss_pred CChhHHHHHHhhhcCCC-ccccccCCccceeecccCcc---ceecCCCCCC----hhhhhhcCCCcEEEeeehhHHhHHH
Q 003578 484 RNADEALEKAHQKYGKN-VEIYQDPDVLDTWFSSALWP---FSTLGWPDVS----ADDFKKFYPTTMLETGHDILFFWVA 555 (809)
Q Consensus 484 ~~~~~~~~~~~~~~~~~-~~~~~~~dvld~Wfds~~~~---~~~~~~~~~~----~~~~~~~~p~d~~~~G~Di~~~w~~ 555 (809)
.+....+.. +|-. ..+ ..+++|.||.+...+ ....|+|... +.+|++|||+|++++|+||++||..
T Consensus 473 ~~i~~~l~~----~g~~~~~l--~~~~~D~~~~~~~~~~~~~~~sg~p~~~~~~~~~~f~~~~P~D~~~~GkDii~~Hl~ 546 (897)
T PRK12300 473 YTIAHKIRE----YGIKPEQL--TPEFFDYVFLGKGDPEEVSKKTGIPKEILEEMREEFLYWYPVDWRHSGKDLIPNHLT 546 (897)
T ss_pred HHHHHHHHH----cCCChHHC--ChhhCceEEeCCCccccCchhcCCCHHHHHHHHHHHhccCCceEEEeeeccCccHHH
Confidence 222222211 1100 011 234555555443211 1123343321 4679999999999999999999888
Q ss_pred HHHHHHHHhcCCCCc-eeEEEeeeEEccCCCcccccccCccChhhHHHhhCCchHHHHHhhCCC-CCcccccHHHHHHHH
Q 003578 556 RMVMMGIEFTGSVPF-SHVYLHGLIRDSQGRKMSKTLGNVIDPIDTIKEFGADALRFTISLGTA-GQDLSLSIERLTANK 633 (809)
Q Consensus 556 ~~~~~~~~l~~~~Pf-~~v~~hg~vld~~G~KMSKS~GN~I~p~dli~~ygaD~lR~~ll~~~~-~~d~~fs~~~l~~~~ 633 (809)
++++++.++.+..|+ +++++|||+++ +|+|||||+||+|+|.+++++||+|++||||++..+ ++|.+|+++.+.+..
T Consensus 547 ~~~~~~~a~~~~~~~Pk~v~~hG~vl~-~G~KMSKS~GNvVdp~eii~~yGaDalRl~L~~~~~~~~D~~fs~~~v~~~~ 625 (897)
T PRK12300 547 FFIFNHVAIFPEEKWPRGIVVNGFVLL-EGKKMSKSKGNVIPLRKAIEEYGADVVRLYLTSSAELLQDADWREKEVESVR 625 (897)
T ss_pred HHHHHHHHhcCCCccCcEEEEcceEEE-CCccccCcCCCCCCHHHHHHHcChHHHHHHHHhCCCCCCCCccCHHHHHHHH
Confidence 888888888877677 89999999996 999999999999999999999999999999998766 999999999999999
Q ss_pred HHHHHHHHHHHHHHHhCCCCCchhhHHHHhhhccchhhhhcCCCchhHHHHHHHHHHHHHHHHHhhcCChHHHHHHHHHH
Q 003578 634 AFTNKLWNAGKFILQNLPSQNDISRWEILLAYKFDEEECLCKAPLPECWVVSKLHMLIDTVTASYDKYFFGDVGRETYDF 713 (809)
Q Consensus 634 ~~~~kl~N~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~~d~~il~~l~~~~~~v~~a~e~~~f~~a~~~i~~f 713 (809)
+++++++|+++++.+... . ..++..|+|++++++++++++.++|++|+|++|++.++.+
T Consensus 626 ~~l~r~~~~~~~~~~~~~---~------------------~~~~~~D~wils~l~~~i~~v~~~~e~~~~~~A~~~i~~~ 684 (897)
T PRK12300 626 RQLERFYELAKELIEIGG---E------------------EELRFIDKWLLSRLNRIIKETTEAMESFQTRDAVQEAFYE 684 (897)
T ss_pred HHHHHHHHHHHHHhcCCC---c------------------cccCHhHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHH
Confidence 999999999887654321 0 1234579999999999999999999999999999999877
Q ss_pred HHHhhHHHHHHHhhhhhhcCCCcHHHHHHHHHHHHHHHHHHHHhccchhHHHHHHHHHhccCCCceEecCCCCCCC-cCC
Q 003578 714 FWSDFADWYIEASKARLYRSEYDSDAIIAQAVLLYIFENILKLLHPFMPFVTEELWQSLRKRKEALIVSPWPQTSL-PRH 792 (809)
Q Consensus 714 ~~~~~~n~Yi~~~k~~l~~~~~~~~~~~~~~~l~~vl~~l~~lL~P~~P~~aeeiw~~L~~~~~sv~~~~wP~~~~-~~d 792 (809)
+++ .+|+|++..++ .+..+++++++.+++||+|||||+||+||+.|+.. +||+.++||+.++ .+|
T Consensus 685 l~~-~~n~Yi~~~k~------------~~~~~l~~~l~~~~~lLaPf~P~~aEeiw~~L~~~-~sv~~~~wP~~~~~~~d 750 (897)
T PRK12300 685 LLN-DLRWYLRRVGE------------ANNKVLREVLEIWIRLLAPFTPHLAEELWHKLGGE-GFVSLEKWPEPDESKID 750 (897)
T ss_pred HHH-HHHHHHHhcch------------HHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHcCCC-CeEEeCCCCCCCcccCC
Confidence 654 56999987664 35678999999999999999999999999999865 6999999999996 689
Q ss_pred HHHHHHHHHHHHHHhhC
Q 003578 793 MSAIKRFENLQSLVILI 809 (809)
Q Consensus 793 ~~~~~~~~~~~~~~~~~ 809 (809)
++++..++.++++++.+
T Consensus 751 ~~~~~~~~~~~~~i~~i 767 (897)
T PRK12300 751 EEAELAEEYVKRLIEDI 767 (897)
T ss_pred HHHHHHHHHHHHHHHHH
Confidence 99999999999998753
No 25
>PRK00390 leuS leucyl-tRNA synthetase; Validated
Probab=100.00 E-value=4.7e-126 Score=1137.72 Aligned_cols=605 Identities=28% Similarity=0.468 Sum_probs=514.8
Q ss_pred CCCCCh-hhHHHHHHHHHhcCCCCCCCCCCCCCEEEeCCCCCCCCCCcchhhHHHHHHHHHHHHHHHCCCcccccCCCCC
Q 003578 60 PKTFDF-TSEERIYNWWESQGYFKPNFERGSDPFVISMPPPNVTGSLHMGHAMFVTLEDIMVRYHRMKGRPTLWLPGTDH 138 (809)
Q Consensus 60 ~~~~~~-~~E~~~~~~W~~~~~f~~~~~~~~~~f~i~~~pPy~nG~lHiGH~~~~~~~Di~~Ry~rm~G~~V~~~~G~D~ 138 (809)
.+.|++ ++|++||++|+++++|++..+.+ ++|+++++||||||.|||||+++++++|+++||+||+|++|+|++||||
T Consensus 2 ~~~y~~~~iE~~w~~~W~~~~~f~~~~~~~-~~~~i~~~pPy~nG~lHiGH~~~~~~~Dii~Ry~rm~G~~V~~~~G~D~ 80 (805)
T PRK00390 2 MERYNPKEIEKKWQKYWEENKTFKTTEDSS-KKYYVLDMFPYPSGGLHMGHVRNYTIGDVIARYKRMQGYNVLHPMGWDA 80 (805)
T ss_pred CCCCCHHHHHHHHHHHHHHCCCcccCccCC-CCEEEEccCCCCCCCcchhhhHHHHHHHHHHHHHHhcCCcccccCccCC
Confidence 467998 89999999999999999876544 4788889999999999999999999999999999999999999999999
Q ss_pred CCCchHHHHHHHHHHcCCCccccCHHHHHHHHHHHHHHHHHHHHHHHHHhcccccCCCccccCChhhHHHHHHHHHHHHH
Q 003578 139 AGIATQLVVEKMLAAEGIKRVELSRDEFTKRVWEWKEKYGGTITSQIKRLGASCDWTRERFTLDEQLSRAVVEAFIRLHE 218 (809)
Q Consensus 139 ~Gl~~~~~~e~~~~~~g~~~~~~~~~~f~~~~~~~~~~~~~~~~~~l~~lgi~~Dw~~~~~T~d~~~~~~v~~~f~~L~~ 218 (809)
||+|||.++ .+.|+++. +|++++++.|++||++||+++||+++|.|+||+|++++|++|.+|++
T Consensus 81 ~Glpie~~a----~~~g~~~~------------~~~~~~~~~~~~~~~~lGi~~Dw~~~~~T~~~~~~~~v~~~f~~L~~ 144 (805)
T PRK00390 81 FGLPAENAA----IKTGTHPA------------EWTYENIANMKKQLKSLGFSYDWSREIATCDPEYYKWTQWIFLKLYE 144 (805)
T ss_pred CCCHHHHHH----HHcCCCHH------------HHHHHHHHHHHHHHHHhCCcccCCCCeecCCHHHHHHHHHHHHHHHH
Confidence 999976654 45676653 67899999999999999999999999999999999999999999999
Q ss_pred cCceeecCcccccCCCCCcccCcccccccc--C-----------------------------------------------
Q 003578 219 KGLIYQGSYMVNWSPNLQTAVSDLEVEYSE--E----------------------------------------------- 249 (809)
Q Consensus 219 ~Gliy~~~~~v~w~p~~~t~lsd~Ev~~~~--~----------------------------------------------- 249 (809)
+|+||++.++|+|||.|+|+||++||+... .
T Consensus 145 ~Gliy~~~~~v~wcp~~~t~La~~ev~~~~~~~~~~~~~~~~~~~~f~~i~~~~~~L~~~l~~~~~w~~~v~~~~~~wig 224 (805)
T PRK00390 145 KGLAYRKESPVNWCPVDGTVLANEQVIDGRCWRCGAPVEKKELRQWFLKITDYADELLDDLDKLEDWPEKVKTMQRNWIG 224 (805)
T ss_pred CCCEEEecCEEEecCCcCCCCCHHHhhCCeecccCCeeEEEecceeeEecchhHHHHHHHHHhhccCcHHHHHHHHhhcc
Confidence 999999999999999999999999997421 1
Q ss_pred CCceEEEEEEecCCCeeEEEEecCCccccCCcEEEECCCCchhhh---------------------------------cc
Q 003578 250 PGTLYYIKYRVAGRSDFLTIATTRPETLFGDVALAVNPQDEHYSQ---------------------------------FI 296 (809)
Q Consensus 250 ~~~~~~~~f~~~~~~~~l~v~Tt~petl~~~~av~v~p~~~~y~~---------------------------------l~ 296 (809)
.+..++++|++.+++.+++|||||||||+|++||||||+++++.. |+
T Consensus 225 ~~~~~~i~f~~~~~~~~l~v~TTrPeTl~g~~aiav~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~ 304 (805)
T PRK00390 225 RSEGAEVTFKVEDSDEKIEVFTTRPDTLFGATYLVLAPEHPLVEKLAEQNPAVAAFIEECKKKSDLERQTETKEKTGVFT 304 (805)
T ss_pred ccceEEEEEEccCCCCEEEEEeCCchHhhcceEEEECCCChhHHhhhcchHHHHHHHHHHhhhcchhhhhcccceeeeec
Confidence 135678999998767899999999999999999999999987633 58
Q ss_pred cCeeecCCCCCCeeeEEecCCccccCCCCceeecCCCChhhHHHHHHhCCCceeecCCCC--------------cccccc
Q 003578 297 GMMAIVPMTYGRHVPIISDKYVDKEFGTGVLKISPGHDHNDYLLARKLGLPILNVMNKDG--------------TLNEVA 362 (809)
Q Consensus 297 g~~~~~P~~~~~~vpi~~~~~V~~~~GTG~v~~~P~h~~~D~~~~~~~~l~~~~~~~~~G--------------~~~~~~ 362 (809)
|+++.||+ .++++||+.++||++++|||+||+|||||++||+++++||||+++++|.+| .+++.
T Consensus 305 g~~~~~P~-~~~~ipi~~~~~V~~~~GTG~V~~~Pah~~~D~~~~~~~~L~~~~~i~~~g~~~~~~~~~~~~~g~~~~~- 382 (805)
T PRK00390 305 GLYAIHPL-TGEKIPVWIADYVLMDYGTGAVMAVPAHDQRDFEFAKKYGLPIKPVIEPGDGDEDISEEAYTGDGVLINS- 382 (805)
T ss_pred CcEEECCC-CCCeeeEEEeccccCCCCCCeEEEcCCCCHHHHHHHHHcCCCceeeeCCCCcccccccccccCCeEEEec-
Confidence 99999999 589999999999999999999999999999999999999999999997544 44433
Q ss_pred cccCCCCHHHHHHHHHHHHHHCCCeeeeecccccCcccccCCCeeEEeeccceeeeccHHHHHHHHHHhcCCceEecchh
Q 003578 363 GLFRGLDRFEARKKLWSDLEETGLAVKKEPHTLRVPRSQRGGEVIEPLVSKQWFVTMEPLAEKALHAVEKGELTIMPERF 442 (809)
Q Consensus 363 g~~~G~~~~~a~~~i~~~L~~~g~~~~~~~~~~~~p~c~r~~~~i~~~~~~qwfl~~~~~~~~~~~~~~~~~~~~~P~~~ 442 (809)
|.|+|+++++||++|++.|+++|++.+ ++.+
T Consensus 383 ~~~~Gl~~~~a~~~Ii~~L~~~g~~~~--------------------------------------------~v~~----- 413 (805)
T PRK00390 383 GELDGLDSEEAKEAIIAWLEEKGLGKR--------------------------------------------KVNY----- 413 (805)
T ss_pred cccCCCCHHHHHHHHHHHHHHcCCCCC--------------------------------------------ceEE-----
Confidence 889999999999999999999998421 1222
Q ss_pred HHHHHHHHhcCCceeeeccccccceeeEEEEcCCcccEEEcCChhHH----------------HHHHh----hhc-CCCc
Q 003578 443 EKIYNHWLSNIKDWCISRQLWWGHRIPVWYIVGKEEEYIVARNADEA----------------LEKAH----QKY-GKNV 501 (809)
Q Consensus 443 ~~~~~~~l~~l~Dw~ISRq~~WG~piP~~~~~~~~~~~~~~~~~~~~----------------~~~~~----~~~-~~~~ 501 (809)
+++|||||||||||+|||+|||+.+ +...+. .+++ +.... ..| .++.
T Consensus 414 ---------~l~DW~ISRQR~WG~PIPi~~~~~~-g~~~v~--~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~g~ 481 (805)
T PRK00390 414 ---------RLRDWGISRQRYWGEPIPIIHCEDC-GIVPVP--EEDLPVVLPEDVVPDGTGSPLAKHPEWVNVTCPKCGK 481 (805)
T ss_pred ---------ECCCccccccccCCCceeEEEECCC-CceeCc--hHhhhhhhhhhcccCCCCChhhhchhhhCCCccccCC
Confidence 4789999999999999999999642 222221 1111 11111 122 1244
Q ss_pred cccccCCccceeecccCccceecCCCCC-----ChhhhhhcCCCcEEEeeehhH-------HhHHHHHHHHHHHhcCCCC
Q 003578 502 EIYQDPDVLDTWFSSALWPFSTLGWPDV-----SADDFKKFYPTTMLETGHDIL-------FFWVARMVMMGIEFTGSVP 569 (809)
Q Consensus 502 ~~~~~~dvld~Wfds~~~~~~~~~~~~~-----~~~~~~~~~p~d~~~~G~Di~-------~~w~~~~~~~~~~l~~~~P 569 (809)
.++|++|||||||||+ ||++.+++|++ ++++|++|||+|++++|+|++ |||...|..++. .++++|
T Consensus 482 ~~~re~Dv~DtwfdSs-w~~~~~~~p~~~~~~~~~~~~~~~~P~Dly~~G~D~~i~hL~y~Rf~~~~l~~~~~-~~~~~P 559 (805)
T PRK00390 482 PARRETDTMDTFVGSS-WYYLRYTDPHNDEAPFDKEAANYWLPVDQYIGGIEHAVLHLLYARFFTKVLRDLGL-VSSDEP 559 (805)
T ss_pred CceeCCcccccccccc-cHHHHhcCcccccCcCChHHhhCcCCCcEEeccHHHHHHHHHHHHHHHHHHHHhhc-ccCCcc
Confidence 6899999999999998 99999888864 247899999999999999965 455544444443 468899
Q ss_pred ceeEEEeeeEEccCCCcccccccCccChhhHHHhhCCchHHHHHhhC-CCCCcccccHHHHHHHHHHHHHHHHHHHHHHH
Q 003578 570 FSHVYLHGLIRDSQGRKMSKTLGNVIDPIDTIKEFGADALRFTISLG-TAGQDLSLSIERLTANKAFTNKLWNAGKFILQ 648 (809)
Q Consensus 570 f~~v~~hg~vld~~G~KMSKS~GN~I~p~dli~~ygaD~lR~~ll~~-~~~~d~~fs~~~l~~~~~~~~kl~N~~~~~~~ 648 (809)
|+++++||++ |||||+||+|+|.+++++||+|++|||+++. ++++|++|+++.+.+.+++++++||++++..+
T Consensus 560 fk~v~~~G~v------KMSKS~GN~i~p~~~i~~ygaD~lRl~l~~~~~~~~d~~~s~~~l~~~~~~l~kl~~~~~~~~~ 633 (805)
T PRK00390 560 FKKLLTQGMV------KMSKSKGNVVDPDDIIEKYGADTARLFEMFAGPPEKDLEWSDSGVEGAYRFLQRVWRLVVDAKG 633 (805)
T ss_pred hhhheecCcE------EeCCCCCCCCCHHHHHHHcChHHHHHHHHhcCCccCCcccCHHHHHHHHHHHHHHHHHHHHhhh
Confidence 9999999999 9999999999999999999999999999985 55999999999999999999999999988544
Q ss_pred hCCCCCchhhHHHHhhhccchhhhhcCCCchhHHHHHHHHHHHHHHHHHhhcCChHHHHHHHHHHHHHhhHHHHHHHhhh
Q 003578 649 NLPSQNDISRWEILLAYKFDEEECLCKAPLPECWVVSKLHMLIDTVTASYDKYFFGDVGRETYDFFWSDFADWYIEASKA 728 (809)
Q Consensus 649 ~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~~d~~il~~l~~~~~~v~~a~e~~~f~~a~~~i~~f~~~~~~n~Yi~~~k~ 728 (809)
+..... ......|+|++++++.++++++++|++|+|++|++.+++|+ +++.++| +
T Consensus 634 ~~~~~~-------------------~~~~~~D~~il~~l~~~i~~v~~~~e~~~f~~ai~~l~~f~-n~lsk~~-~---- 688 (805)
T PRK00390 634 EAGALD-------------------VAALSEDKELRRKLHKTIKKVTEDIERLRFNTAIAALMELV-NALYKAE-D---- 688 (805)
T ss_pred cccccC-------------------cccChhhHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHH-HHHHHHH-H----
Confidence 322111 12235789999999999999999999999999999999998 4665555 1
Q ss_pred hhhcCCCcHHHHHHHHHHHHHHHHHHHHhccchhHHHHHHHHHhccCCCceEecCCCCCCC
Q 003578 729 RLYRSEYDSDAIIAQAVLLYIFENILKLLHPFMPFVTEELWQSLRKRKEALIVSPWPQTSL 789 (809)
Q Consensus 729 ~l~~~~~~~~~~~~~~~l~~vl~~l~~lL~P~~P~~aeeiw~~L~~~~~sv~~~~wP~~~~ 789 (809)
..+..++..+++.+++||+|||||+|||||+.|+.. +||+.++||.+++
T Consensus 689 -----------~~~~~~l~~~l~~l~~lLaPf~P~iaEElw~~L~~~-~sv~~~~wP~~~~ 737 (805)
T PRK00390 689 -----------EQDKAVLREALEILVRLLAPFAPHLAEELWEKLGHE-GSIANAPWPTADE 737 (805)
T ss_pred -----------HHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHcCCC-CeeEecCCCCCCH
Confidence 235678999999999999999999999999999754 6899999999874
No 26
>KOG0434 consensus Isoleucyl-tRNA synthetase [Translation, ribosomal structure and biogenesis]
Probab=100.00 E-value=3.7e-123 Score=1005.58 Aligned_cols=741 Identities=25% Similarity=0.455 Sum_probs=661.5
Q ss_pred CCCCCCCh-hhHHHHHHHHHhcCCCCCCCC--CCCCCEEEeCCCCCCCCCCcchhhHHHHHHHHHHHHHHHCCCcccccC
Q 003578 58 TLPKTFDF-TSEERIYNWWESQGYFKPNFE--RGSDPFVISMPPPNVTGSLHMGHAMFVTLEDIMVRYHRMKGRPTLWLP 134 (809)
Q Consensus 58 ~~~~~~~~-~~E~~~~~~W~~~~~f~~~~~--~~~~~f~i~~~pPy~nG~lHiGH~~~~~~~Di~~Ry~rm~G~~V~~~~ 134 (809)
+.|+.+++ +-|+++.++|.+.+.|+.+.. +++++|.+.++||+++|-+|-||++.-+++|++.||..|.||.|-.-+
T Consensus 3 ~~~~n~nfp~eEEkvle~W~e~~aF~~slk~sk~rp~ftFyDGPPFATGlPHyGHiLa~TIKDiVtRya~~~G~hVeRRF 82 (1070)
T KOG0434|consen 3 EVPENFNFPKEEEKVLEFWREIDAFHTSLKLSKGRPKFTFYDGPPFATGLPHYGHILASTIKDIVTRYATQTGHHVERRF 82 (1070)
T ss_pred cccccCCCchhHHHHHHHHHHhhHHHHHHHhhCCCCceeeccCCccccCCCccchhhhhhHHHHHHHHhhccccceeeec
Confidence 34677887 889999999999999997643 468999999999999999999999999999999999999999999999
Q ss_pred CCCCCCCchHHHHHHHHHHcCC-CccccCHHHHHHHHHHHHHHHHHHHHHHHHHhcccccCCCccccCChhhHHHHHHHH
Q 003578 135 GTDHAGIATQLVVEKMLAAEGI-KRVELSRDEFTKRVWEWKEKYGGTITSQIKRLGASCDWTRERFTLDEQLSRAVVEAF 213 (809)
Q Consensus 135 G~D~~Gl~~~~~~e~~~~~~g~-~~~~~~~~~f~~~~~~~~~~~~~~~~~~l~~lgi~~Dw~~~~~T~d~~~~~~v~~~f 213 (809)
||||||+|+|..+.|.+...|. +..+++.+++.++|+.-+-.|...+++.+.|||-++||++.|.|++|.+.+.|+|+|
T Consensus 83 GWD~HGlPVE~eIDKkLgI~g~~dV~kmGI~kYN~ECR~IVmrYssEWe~tv~RlGRWidF~ndYkTmyp~FMESvWwvF 162 (1070)
T KOG0434|consen 83 GWDTHGLPVEYEIDKKLGITGRDDVMKMGIDKYNNECRKIVMRYSSEWEKTVERLGRWIDFDNDYKTLYPSFMESVWWVF 162 (1070)
T ss_pred ccccCCCccceeechhcCCCCHHHHHHHhHHhHhHHHHHHHHHHHHHHHHHHHhhccceeccCCcceecHHHHHHHHHHH
Confidence 9999999999999887643333 345678999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHcCceeecCcccccCCCCCcccCcccc--ccccCCCceEEEEEEecCC-CeeEEEEecCCccccCCcEEEECCCCc
Q 003578 214 IRLHEKGLIYQGSYMVNWSPNLQTAVSDLEV--EYSEEPGTLYYIKYRVAGR-SDFLTIATTRPETLFGDVALAVNPQDE 290 (809)
Q Consensus 214 ~~L~~~Gliy~~~~~v~w~p~~~t~lsd~Ev--~~~~~~~~~~~~~f~~~~~-~~~l~v~Tt~petl~~~~av~v~p~~~ 290 (809)
.+|++||++|||-+..+||..|.|+|||-|- .|++..++++++.|++.+. +..++.|||+||||++|.|+||||+..
T Consensus 163 keL~~kglVYRG~kVMP~STac~TPLSNFEa~QNYKdV~DPav~v~F~li~~~~~slvAWTTTPWTLPSNlal~Vnp~~~ 242 (1070)
T KOG0434|consen 163 KELHEKGLVYRGFKVMPYSTACTTPLSNFEAQQNYKDVPDPAVFVAFPLIGDPNVSLVAWTTTPWTLPSNLALCVNPDFQ 242 (1070)
T ss_pred HHHHhcCceecceeeeccccccCCcccchhcccCcccCCCCeEEEEeeccCCcceeEEEEecCCccCccceeEEEcCCeE
Confidence 9999999999999999999999999999876 6999999999999998765 578999999999999999999999964
Q ss_pred h----------------------h----------------hhcccCeeecCCCC------CCeeeEEecCCccccCCCCc
Q 003578 291 H----------------------Y----------------SQFIGMMAIVPMTY------GRHVPIISDKYVDKEFGTGV 326 (809)
Q Consensus 291 ~----------------------y----------------~~l~g~~~~~P~~~------~~~vpi~~~~~V~~~~GTG~ 326 (809)
+ | ..|.|++|..+|.+ .....|++++||+.+.|||+
T Consensus 243 Yvki~dk~~~k~yil~esrl~~l~k~~~~~~~eiler~~G~~L~g~kYeplF~YF~~~~~~~aFrvl~d~yVt~~sGTGi 322 (1070)
T KOG0434|consen 243 YVKIKDKTTGKKYILMESRLGELYKNPKNDNYEILERFQGAALVGLKYEPLFPYFAETFEEGAFRVLSDDYVTEDSGTGI 322 (1070)
T ss_pred EEEEEeccCCeEEEEeHHHHHHHhcCcccccHHHHHhcccccccCcccCccchHHHHHhccCceEEeccCcEecCCCcee
Confidence 2 1 25889999888742 45678999999999999999
Q ss_pred eeecCCCChhhHHHHHHhCC-----CceeecCCCCcccccccccCCCCHHHHHHHHHHHHHHCCCeeeeecccccCcccc
Q 003578 327 LKISPGHDHNDYLLARKLGL-----PILNVMNKDGTLNEVAGLFRGLDRFEARKKLWSDLEETGLAVKKEPHTLRVPRSQ 401 (809)
Q Consensus 327 v~~~P~h~~~D~~~~~~~~l-----~~~~~~~~~G~~~~~~g~~~G~~~~~a~~~i~~~L~~~g~~~~~~~~~~~~p~c~ 401 (809)
||++|+.|++||..+..+|+ -..|++|++|.++.....|+|..|+||.+.|++.|++.|.++....+.|++|+||
T Consensus 323 VH~AP~FGe~Dy~~c~~~giI~~d~~~~cpVDe~G~~Tsev~dfaG~YVKDaDK~Ii~~lk~~g~lv~~~~i~HsYPFCW 402 (1070)
T KOG0434|consen 323 VHQAPAFGEEDYRACVANGIIRKDSLPPCPVDESGLFTSEVTDFAGQYVKDADKLIIRSLKASGRLVKASQITHSYPFCW 402 (1070)
T ss_pred eecCCccChhhHHHHHHcCcccCCCCCCCccccCCccccccccccceeeccchHHHHHHHHhcCceeeeeeeeeccCcee
Confidence 99999999999999999986 3578999999999999999999999999999999999999999999999999999
Q ss_pred cCCCeeEEeeccceeeeccHHHHHHHHHHhcCCceEecchh-HHHHHHHHhcCCceeeeccccccceeeEEEEcCCcccE
Q 003578 402 RGGEVIEPLVSKQWFVTMEPLAEKALHAVEKGELTIMPERF-EKIYNHWLSNIKDWCISRQLWWGHRIPVWYIVGKEEEY 480 (809)
Q Consensus 402 r~~~~i~~~~~~qwfl~~~~~~~~~~~~~~~~~~~~~P~~~-~~~~~~~l~~l~Dw~ISRq~~WG~piP~~~~~~~~~~~ 480 (809)
||.+|+++++.+.||++++.+.+++++... +..|+|+.. .++|.|||++.+||.|||+|+||+|||+|..++ .++.
T Consensus 403 RSDTPLiYraVPsWFVrVk~~v~~ll~nn~--~t~WVP~~ikeKRF~NWL~nARDW~iSRnR~WGTPIpLWVSdD-~eev 479 (1070)
T KOG0434|consen 403 RSDTPLIYRAVPSWFVRVKNIVDQLLRNNM--KTHWVPQNIKEKRFANWLKNARDWNISRNRYWGTPIPLWVSDD-YEEV 479 (1070)
T ss_pred cCCChHHHhhccHhhhhHHHHHHHHHhccc--ccccCChhhhHHHHHHHHhhhhhcccccccccCCCcceEEccC-CceE
Confidence 999999999999999999999999998754 678999976 579999999999999999999999999999876 5678
Q ss_pred EEcCChhHHHHHHhhhc----------------CCCccccccCCccceeecccCccceecCCCCCChhhhhhcCCCcEEE
Q 003578 481 IVARNADEALEKAHQKY----------------GKNVEIYQDPDVLDTWFSSALWPFSTLGWPDVSADDFKKFYPTTMLE 544 (809)
Q Consensus 481 ~~~~~~~~~~~~~~~~~----------------~~~~~~~~~~dvld~Wfds~~~~~~~~~~~~~~~~~~~~~~p~d~~~ 544 (809)
++.+|+.++.+....+. +....+.|.++|+|.||+||.+|++...||.++.+.|++.||+|++-
T Consensus 480 VcigSi~eLEeLSG~kItDlHRe~iD~itIps~~gkg~l~Rv~eVfDCWFESGSMPYAq~HyPFenk~~fe~~fPadFIa 559 (1070)
T KOG0434|consen 480 VCIGSIKELEELSGVKITDLHRESIDHITIPSKKGKGVLHRVSEVFDCWFESGSMPYAQRHYPFENKEEFEENFPADFIA 559 (1070)
T ss_pred EEeccHHHHHHhcCCcchhhhhhhcCceecccCCCCcceehhhhHhhhhhccCCCcchhhcCCccchHHHhhcCchHhhh
Confidence 88899888765433211 11246888999999999999999999999999989999999999999
Q ss_pred eeehhHHhHHHHHHHHHHHhcCCCCceeEEEeeeEEccCCCcccccccCccChhhHHHhhCCchHHHHHhhCCC--CCcc
Q 003578 545 TGHDILFFWVARMVMMGIEFTGSVPFSHVYLHGLIRDSQGRKMSKTLGNVIDPIDTIKEFGADALRFTISLGTA--GQDL 622 (809)
Q Consensus 545 ~G~Di~~~w~~~~~~~~~~l~~~~Pf~~v~~hg~vld~~G~KMSKS~GN~I~p~dli~~ygaD~lR~~ll~~~~--~~d~ 622 (809)
+|-||.|+|+..++.++.++.|++||++++++|.|+..+|+|||||+.|.-+|..++++||||+||+||+.++. ...+
T Consensus 560 EGlDQTRGWFYTL~VlsT~LF~kppfkNvIvnGlVLAeDG~KMSKrlkNYPdP~~iinkYGADalRlYLInSPVvraE~L 639 (1070)
T KOG0434|consen 560 EGLDQTRGWFYTLLVLSTALFGKPPFKNVIVNGLVLAEDGKKMSKRLKNYPDPSLIINKYGADALRLYLINSPVVRAENL 639 (1070)
T ss_pred hccccccchhhHHHHHHHHHcCCCcchheeEeeeEEecccHHHhhhhhcCCCHHHHHHhhcchheeeeeecCcccccccc
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999988 7899
Q ss_pred cccHHHHHH-HHHHHHHHHHHHHHHHHhCCCCCchhhHHHHhhhccchhhhhcCCCchhHHHHHHHHHHHHHHHHHhhcC
Q 003578 623 SLSIERLTA-NKAFTNKLWNAGKFILQNLPSQNDISRWEILLAYKFDEEECLCKAPLPECWVVSKLHMLIDTVTASYDKY 701 (809)
Q Consensus 623 ~fs~~~l~~-~~~~~~kl~N~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~~d~~il~~l~~~~~~v~~a~e~~ 701 (809)
.|+++.+.. .++.+-.+||+.+|+.+|......... ..+.........+..|+||++..+.++.-+++.|+.|
T Consensus 640 kFkeeGVrevvk~v~lPW~NsyrF~~qn~~~~~~~~g------~~f~~~~~~~S~NvmDrWI~a~~qslv~fv~~eM~~Y 713 (1070)
T KOG0434|consen 640 KFKEEGVREVVKDVLLPWYNSYRFLVQNAALLKKETG------KDFVFDDSVTSSNVMDRWILASTQSLVGFVREEMDQY 713 (1070)
T ss_pred ccchhhHHHHHHhhhhhhhHHHHHHHHHHHHhccccC------CccccccccccchhHHHHHHHHHHHHHHHHHHHHHhe
Confidence 999999988 678888999999999887432111000 0000011112346789999999999999999999999
Q ss_pred ChHHHHHHHHHHHHHhhHHHHHHHhhhhhhcCCCcHHHHHHHHHHHHHHHHHHHHhccchhHHHHHHHHHhcc-------
Q 003578 702 FFGDVGRETYDFFWSDFADWYIEASKARLYRSEYDSDAIIAQAVLLYIFENILKLLHPFMPFVTEELWQSLRK------- 774 (809)
Q Consensus 702 ~f~~a~~~i~~f~~~~~~n~Yi~~~k~~l~~~~~~~~~~~~~~~l~~vl~~l~~lL~P~~P~~aeeiw~~L~~------- 774 (809)
++.+++-.+..|+ +++.||||..++.|+.+++...+...++.+|..+|..++++++||.||+||.+||+|..
T Consensus 714 rLytVvp~llkfi-D~LTNwYiR~nRrrlkGe~G~~d~~~AL~~Lf~vL~t~~r~MaPfTPF~tE~iyq~Lk~~~~~~~~ 792 (1070)
T KOG0434|consen 714 RLYTVVPRLLKFI-DELTNWYIRFNRRRLKGENGEHDCHNALNVLFEVLFTLVRVMAPFTPFFTEYIYQNLKKYIPIDKN 792 (1070)
T ss_pred ehhhhHHHHHHHH-HHhhhhheehhhhhhcCCCchHHHHHHHHHHHHHHHHHHHHHcCCchHHHHHHHHHHHhcCCcccc
Confidence 9999999999999 89999999999999987655557788899999999999999999999999999999953
Q ss_pred --CCCceEecCCCCCCC-cCCHHHHHHHHHHHHHHhh
Q 003578 775 --RKEALIVSPWPQTSL-PRHMSAIKRFENLQSLVIL 808 (809)
Q Consensus 775 --~~~sv~~~~wP~~~~-~~d~~~~~~~~~~~~~~~~ 808 (809)
...|||...+|.+.+ ..|+..|.+++.+|.++.+
T Consensus 793 ~~~~~SVHfl~~P~~~~~~~de~ve~~v~~m~siIdl 829 (1070)
T KOG0434|consen 793 EKSERSVHFLSYPTPKEELIDETVERRVERMQSIIDL 829 (1070)
T ss_pred CCccceeEEeecCCchhhhccchHHHHHHHHHHHHHH
Confidence 247999999999995 8999888888888877754
No 27
>COG0495 LeuS Leucyl-tRNA synthetase [Translation, ribosomal structure and biogenesis]
Probab=100.00 E-value=6.8e-108 Score=947.66 Aligned_cols=611 Identities=28% Similarity=0.483 Sum_probs=497.6
Q ss_pred CCCCh-hhHHHHHHHHHhcCCCCCCCCCCC-CCEEEeCCCCCCCCCCcchhhHHHHHHHHHHHHHHHCCCcccccCCCCC
Q 003578 61 KTFDF-TSEERIYNWWESQGYFKPNFERGS-DPFVISMPPPNVTGSLHMGHAMFVTLEDIMVRYHRMKGRPTLWLPGTDH 138 (809)
Q Consensus 61 ~~~~~-~~E~~~~~~W~~~~~f~~~~~~~~-~~f~i~~~pPy~nG~lHiGH~~~~~~~Di~~Ry~rm~G~~V~~~~G~D~ 138 (809)
..|++ ++|+|||++|+++++|+.+.+.++ ++|+++++.|||||.|||||++||+++||++||+||+||||||++|||+
T Consensus 3 ~~y~~~~IE~KWQ~~W~e~~~Fe~~~d~~~~~Kfyvl~mfPYpSG~LHvGH~r~Yti~Dv~aRykRm~GyNVL~PMGwda 82 (814)
T COG0495 3 SRYNPREIEEKWQKRWEEAKVFEADEDSDKPEKFYVLVMFPYPSGALHVGHVRNYTIGDVIARYKRMQGYNVLHPMGWDA 82 (814)
T ss_pred cccchHHHHHHHHHHHHhcCCcccCCCCCCCCceEEEeCCCCCCCCcccCccccccHHHHHHHHHHhcCCeecccCcccc
Confidence 46788 899999999999999999888665 5999999999999999999999999999999999999999999999999
Q ss_pred CCCchHHHHHHHHHHcCCCccccCHHHHHHHHHHHHHHHHHHHHHHHHHhcccccCCCccccCChhhHHHHHHHHHHHHH
Q 003578 139 AGIATQLVVEKMLAAEGIKRVELSRDEFTKRVWEWKEKYGGTITSQIKRLGASCDWTRERFTLDEQLSRAVVEAFIRLHE 218 (809)
Q Consensus 139 ~Gl~~~~~~e~~~~~~g~~~~~~~~~~f~~~~~~~~~~~~~~~~~~l~~lgi~~Dw~~~~~T~d~~~~~~v~~~f~~L~~ 218 (809)
+|+| +|++|.+.|.+|. .|+.++++.|++||++||+++||+|++.|+||+|++++||+|.+|++
T Consensus 83 fGlP----ae~~A~~~~~~P~------------~wt~~ni~~~k~qlk~lG~siDW~Ref~T~Dp~Yyk~~QW~F~kL~e 146 (814)
T COG0495 83 FGLP----AENAAIKIGTDPA------------KWTYYNIAYMKKQLKSLGFSIDWRREFATCDPEYYKWIQWQFLKLYE 146 (814)
T ss_pred cCch----HHHHHHHhCCChH------------HHHHHHHHHHHHHHHHhCCccccccceecCCccHHHHHHHHHHHHHH
Confidence 9999 6777788898886 78999999999999999999999999999999999999999999999
Q ss_pred cCceeecCcccccCCCCCcccCcccccccc--------------------------------------------------
Q 003578 219 KGLIYQGSYMVNWSPNLQTAVSDLEVEYSE-------------------------------------------------- 248 (809)
Q Consensus 219 ~Gliy~~~~~v~w~p~~~t~lsd~Ev~~~~-------------------------------------------------- 248 (809)
+||||+++.+|||||.|+|+|+|+||....
T Consensus 147 kGL~y~~~~~VnwcP~d~tvlaneqv~~g~~~r~~~~V~~kel~qw~~kit~yae~ll~~l~~l~~~wPE~Vk~mq~nWI 226 (814)
T COG0495 147 KGLAYRKEAPVNWCPVDGTVLANEQVIDGGCWRCGEPVEIKELTQWFFKITDYADELLDDLDKLATLWPETVKGMQRNWI 226 (814)
T ss_pred CCCEEeccccceeCCCcCCccccceeecCCcccCCCceeEeeeEEEEEEechhHHHHHhhhhhhccCCchhHHHHHHcCc
Confidence 999999999999999999999999997541
Q ss_pred CCCceEEEEEEecCC--CeeEEEEecCCccccCCcEEEECCCCchhh---------------------------------
Q 003578 249 EPGTLYYIKYRVAGR--SDFLTIATTRPETLFGDVALAVNPQDEHYS--------------------------------- 293 (809)
Q Consensus 249 ~~~~~~~~~f~~~~~--~~~l~v~Tt~petl~~~~av~v~p~~~~y~--------------------------------- 293 (809)
.++..+.+.|.+.+. ...+.|+||||.|++|.+.+++.|+++..+
T Consensus 227 g~s~g~~v~f~~~~~~~~~~~~vfttr~dt~~gvt~~~~a~~h~lv~~~~~~~~~~~~a~fv~~~~~~~~~~~~~~~~~k 306 (814)
T COG0495 227 GPSEGYEVAFVVDGEEEIVSIEVFTTRPDTLFGVTYVVLAPEHPLVGKLVTNPQTPLVAEFVDECKGTGVVESVPAHAEK 306 (814)
T ss_pred CCCCCeEEEEecCCcccceeeeeeeccCccccCeEEEEEeCCchHHHHHhcCccchhHHHHHHHhcCCCceeeeeccCCC
Confidence 122234455555333 356999999999999999999999986321
Q ss_pred --hcccCeeecCCCCCCeeeEEecCCccccCCCCceeecCCCChhhHHHHHHhCCCceeecCCCC-----------cccc
Q 003578 294 --QFIGMMAIVPMTYGRHVPIISDKYVDKEFGTGVLKISPGHDHNDYLLARKLGLPILNVMNKDG-----------TLNE 360 (809)
Q Consensus 294 --~l~g~~~~~P~~~~~~vpi~~~~~V~~~~GTG~v~~~P~h~~~D~~~~~~~~l~~~~~~~~~G-----------~~~~ 360 (809)
-..|.+++||++ ++.|||+.++||.+.+|||+||.||+|+.+|+++|++|+||+..++...| . .-
T Consensus 307 ~gv~~g~~a~~p~~-~e~iPi~~a~~vl~~ygtgavm~vpahd~rd~efA~~y~l~i~~vi~~~~~~~~~~~~~~g~-li 384 (814)
T COG0495 307 DGVFLGGYAINPVN-GEKIPVWIANYVLMEYGTGAVMGVPAHDERDLEFATKYKLPIKKVIMPEGTVGKKVYEGEGV-LI 384 (814)
T ss_pred cceeccccccCCCC-CCcCCEEEeCcccccccccceecCCCCCchhhHHHHhcCCCeEEEEecCCCcccceeccCce-Ee
Confidence 145778899995 69999999999999999999999999999999999999999998775433 3 23
Q ss_pred cccccCCCCHHHHHHHHHHHHHHCCCeeeeecccccCcccccCCCeeEEeeccceeeeccHHHHHHHHHHhcCCceEecc
Q 003578 361 VAGLFRGLDRFEARKKLWSDLEETGLAVKKEPHTLRVPRSQRGGEVIEPLVSKQWFVTMEPLAEKALHAVEKGELTIMPE 440 (809)
Q Consensus 361 ~~g~~~G~~~~~a~~~i~~~L~~~g~~~~~~~~~~~~p~c~r~~~~i~~~~~~qwfl~~~~~~~~~~~~~~~~~~~~~P~ 440 (809)
+.|.++|++..+|...+...|. .+...|||+++
T Consensus 385 nS~~~~gl~~e~a~~~~~~~l~--------------------------~~~~~q~~v~Y--------------------- 417 (814)
T COG0495 385 NSGGLDGLDYEEAKVKIRCGLV--------------------------KRGLGQWFVNY--------------------- 417 (814)
T ss_pred ccccccCcchhHHHHHHHHhHH--------------------------HhcCCceEEec---------------------
Confidence 5567888888866666654443 34557888886
Q ss_pred hhHHHHHHHHhcCCceeeeccccccceeeEEEEcCCcccEEEcCChhHHHHHHhh--------------------hcCCC
Q 003578 441 RFEKIYNHWLSNIKDWCISRQLWWGHRIPVWYIVGKEEEYIVARNADEALEKAHQ--------------------KYGKN 500 (809)
Q Consensus 441 ~~~~~~~~~l~~l~Dw~ISRq~~WG~piP~~~~~~~~~~~~~~~~~~~~~~~~~~--------------------~~~~~ 500 (809)
+++||.+||||+||.|||+.+|+.+ ..+ ...++++...+++ .|. +
T Consensus 418 -----------~lrdW~~srqRywg~pipii~~e~~-~~~--~~~~d~Lpv~lp~~~~~~gt~~pL~~~~~W~~~s~~-~ 482 (814)
T COG0495 418 -----------RLRDWLKSRQRYWGEPIPIIHCEDC-GVV--PVPEDWLPVKLPERVRGLGTGSPLPWDEEWVIESLP-D 482 (814)
T ss_pred -----------ccchHHHHHHHHhCCCcceeEcccC-Ccc--cCchHhcCcccccccccCCCCCCCCCCcceEEEecC-C
Confidence 4799999999999999999999753 111 1111111111111 122 3
Q ss_pred ccccccCCccceeecccCccceecCCCCCC------hhhhhhcCCCcEEEeeehhHHhHHHHHHHHHHHhc------CCC
Q 003578 501 VEIYQDPDVLDTWFSSALWPFSTLGWPDVS------ADDFKKFYPTTMLETGHDILFFWVARMVMMGIEFT------GSV 568 (809)
Q Consensus 501 ~~~~~~~dvld~Wfds~~~~~~~~~~~~~~------~~~~~~~~p~d~~~~G~Di~~~w~~~~~~~~~~l~------~~~ 568 (809)
.+.+|+++|||+|++|+ ||+..+..|... +++|++|||+|+|++|+|.+-.|+...+....++. ..+
T Consensus 483 s~~~ret~Tm~~~~~ss-wy~~r~~d~~~~~~~~~~~e~~~yW~PVD~yigG~ehavlHLly~rF~Hkal~d~g~~p~~e 561 (814)
T COG0495 483 STAYRETDTMDTFIDSS-WYYLRFFDPIFLGELPFDREEFNYWYPVDLYIGGIEHAVLHLLYFRFFHKALFDEGLVPKDE 561 (814)
T ss_pred CceeeehhhhhHhcccc-cccHhhcChhcCccchhcHHHHhcccChheeecchhHHHHHHHHHHHHHHHhcccCcCCCcc
Confidence 67899999999999999 887765444433 47899999999999999977666555555555443 357
Q ss_pred CceeEEEeeeEEccCCCcccccccCccChhhHHHhhCCchHHHHHhhCCC-CCcccccHHHHHHHHHHHHHHHHHHHHHH
Q 003578 569 PFSHVYLHGLIRDSQGRKMSKTLGNVIDPIDTIKEFGADALRFTISLGTA-GQDLSLSIERLTANKAFTNKLWNAGKFIL 647 (809)
Q Consensus 569 Pf~~v~~hg~vld~~G~KMSKS~GN~I~p~dli~~ygaD~lR~~ll~~~~-~~d~~fs~~~l~~~~~~~~kl~N~~~~~~ 647 (809)
||++++++|||+..+|+|||||+||+|+|++++++||||++|+|+++.++ .+|++|+++.+++.+++++|+|+++....
T Consensus 562 pf~~L~~qGmVl~~~g~KMSKSKgN~v~p~~~i~~yGADt~Rl~~m~~ap~~~d~~W~e~gv~g~~rfL~r~~~l~~~~~ 641 (814)
T COG0495 562 PFKKLITQGMVLGEEGEKMSKSKGNVVDPEEAVEKYGADTVRLYIMFAAPPEQDLEWSESGVEGARRFLQRVWNLVKEHL 641 (814)
T ss_pred chhhhhccceEEecCCCccccccCCCCCHHHHHHHhCchHHHHHHHhhCChhhCCCCChhhhHHHHHHHHHHHHHHHHhh
Confidence 99999999999844899999999999999999999999999999999988 99999999999999999999999876655
Q ss_pred HhCCCCCchhhHHHHhhhccchhhhhcCCCchhHHHHHHHHHHHHHHHHHhhc-CChHHHHHHHHHHHHHhhHHHHHHHh
Q 003578 648 QNLPSQNDISRWEILLAYKFDEEECLCKAPLPECWVVSKLHMLIDTVTASYDK-YFFGDVGRETYDFFWSDFADWYIEAS 726 (809)
Q Consensus 648 ~~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~~d~~il~~l~~~~~~v~~a~e~-~~f~~a~~~i~~f~~~~~~n~Yi~~~ 726 (809)
........ ......++| .++++++.|.+.+++ +.|++++..+|+|+ +. -.+|....
T Consensus 642 ~~~~~~~~------------------~~~~~~~~~---~~h~~~~~v~~~~e~~~~~nt~i~~~m~l~-N~-l~~~~~~~ 698 (814)
T COG0495 642 EKLVEELT------------------KEQGKEDRW---LLHRTIKKVTEDFEARQTFNTAIAALMELL-NA-LRKYLRRT 698 (814)
T ss_pred hccccccc------------------chhhHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HH-HHHHHhcc
Confidence 43210000 000023444 555666777788877 99999999999998 33 34554322
Q ss_pred hhhhhcCCCcHHHHHHHHHHHHHHHHHHHHhccchhHHHHHHHHHhccCCCceEecCCCCCCC
Q 003578 727 KARLYRSEYDSDAIIAQAVLLYIFENILKLLHPFMPFVTEELWQSLRKRKEALIVSPWPQTSL 789 (809)
Q Consensus 727 k~~l~~~~~~~~~~~~~~~l~~vl~~l~~lL~P~~P~~aeeiw~~L~~~~~sv~~~~wP~~~~ 789 (809)
.. ...++..+++.+++||+||+||+|||||+.|++. .+|..++||++++
T Consensus 699 ~~-------------~~~~l~~~l~~~v~lLaP~aPH~aEElW~~lg~~-~~v~~~~wP~~de 747 (814)
T COG0495 699 EG-------------DRKVLREALETWVRLLAPFAPHIAEELWEELGNE-GFVSNAPWPEPDE 747 (814)
T ss_pred cc-------------hHHHHHHHHHHHHHHhcccccHHHHHHHHHhcCC-CceeeCCCCCCCh
Confidence 21 1167888999999999999999999999999974 4899999999995
No 28
>KOG0435 consensus Leucyl-tRNA synthetase [Translation, ribosomal structure and biogenesis]
Probab=100.00 E-value=5.2e-101 Score=835.67 Aligned_cols=616 Identities=26% Similarity=0.421 Sum_probs=490.1
Q ss_pred hhHHHHHHHHHhcCCCCCCCCCCCCCEEEeCCCCCCCCCCcchhhHHHHHHHHHHHHHHHCCCcccccCCCCCCCCchHH
Q 003578 66 TSEERIYNWWESQGYFKPNFERGSDPFVISMPPPNVTGSLHMGHAMFVTLEDIMVRYHRMKGRPTLWLPGTDHAGIATQL 145 (809)
Q Consensus 66 ~~E~~~~~~W~~~~~f~~~~~~~~~~f~i~~~pPy~nG~lHiGH~~~~~~~Di~~Ry~rm~G~~V~~~~G~D~~Gl~~~~ 145 (809)
.+|+.|+++|++...|.++.+.++++|++.|. |||+|.|||||.+.||++|+++||+||+||+|++++|||.+|||
T Consensus 34 ~iEk~W~~~~~~~~~~~~~~d~sk~KYiLsMF-PYPSG~LHiGHvRVYTIsD~laRf~rm~GynVihPMGWDaFGLP--- 109 (876)
T KOG0435|consen 34 MIEKHWKQYLKDGFPFSKDSDKSKKKYILSMF-PYPSGALHIGHVRVYTISDILARFYRMKGYNVIHPMGWDAFGLP--- 109 (876)
T ss_pred HHHHHHHHHHhcCCccccccccCCCceEEEec-CCCCCcccccceEEEEehHHHHHHHHhcCceeecCCcccccCCc---
Confidence 68999999999999888766666777888887 99999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHcCCCccccCHHHHHHHHHHHHHHHHHHHHHHHHHhcccccCCCccccCChhhHHHHHHHHHHHHHcCceeec
Q 003578 146 VVEKMLAAEGIKRVELSRDEFTKRVWEWKEKYGGTITSQIKRLGASCDWTRERFTLDEQLSRAVVEAFIRLHEKGLIYQG 225 (809)
Q Consensus 146 ~~e~~~~~~g~~~~~~~~~~f~~~~~~~~~~~~~~~~~~l~~lgi~~Dw~~~~~T~d~~~~~~v~~~f~~L~~~Gliy~~ 225 (809)
+|++|.+.|++|. .|+..+++.|++||++||++|||+|+..|++|+|++|+||+|.+|+++||+|+.
T Consensus 110 -AENAAiergv~P~------------sWT~~NI~~Mk~Ql~~lg~~FDWdrEiSTC~PdYYKWTQwiFlkLfe~GLAYq~ 176 (876)
T KOG0435|consen 110 -AENAAIERGVHPA------------SWTINNIAKMKQQLKSLGISFDWDREISTCEPDYYKWTQWIFLKLFEKGLAYQA 176 (876)
T ss_pred -hhhHHHhcCCCch------------hhhHHHHHHHHHHHHHcCcccccccccccCCcchhHHHHHHHHHHHHhhhhhcc
Confidence 8889999999997 688999999999999999999999999999999999999999999999999999
Q ss_pred CcccccCCCCCcccCcccccccc-------------------------------------------------CCCceEEE
Q 003578 226 SYMVNWSPNLQTAVSDLEVEYSE-------------------------------------------------EPGTLYYI 256 (809)
Q Consensus 226 ~~~v~w~p~~~t~lsd~Ev~~~~-------------------------------------------------~~~~~~~~ 256 (809)
+.+|||||.++|+||+++|+-.. ..+...-+
T Consensus 177 Ea~VNWDPvD~TVLAnEQVD~~G~SWRSGA~VEkK~LrQWfikttaYAk~L~d~L~~L~~W~~vk~mQrnWIG~~~G~el 256 (876)
T KOG0435|consen 177 EAEVNWDPVDKTVLANEQVDADGCSWRSGAKVEKKKLRQWFIKTTAYAKRLLDGLETLPEWPEVKDMQRNWIGRCDGAEL 256 (876)
T ss_pred ccccccCcccceeecchhhcccCccccccchhhHHHHHHHHhhhhHHHHHHHHHHHhhhhhhhHHHHHHhhcccccceEE
Confidence 99999999999999999995221 12333557
Q ss_pred EEEecCCC---eeEEEEecCCccccCCcEEEECCCCchh------h------hc------ccCeeecCCCCCCeeeEEec
Q 003578 257 KYRVAGRS---DFLTIATTRPETLFGDVALAVNPQDEHY------S------QF------IGMMAIVPMTYGRHVPIISD 315 (809)
Q Consensus 257 ~f~~~~~~---~~l~v~Tt~petl~~~~av~v~p~~~~y------~------~l------~g~~~~~P~~~~~~vpi~~~ 315 (809)
.|++.+.+ +.|.|+|||||||+|.+.+++.|++... + .| .+..+.+|+ +|+.+||+.+
T Consensus 257 ~F~ll~~~~~de~ltv~Tt~Petl~~~~f~vl~~~H~L~~~~~~lkefl~~~~l~~Kg~~lp~~A~Np~-tg~~iPv~~a 335 (876)
T KOG0435|consen 257 MFPLLDDGSNDEILTVYTTRPETLFGASFLVLAPSHSLLDKDSSLKEFLSKSDLPQKGVQLPCQAKNPV-TGRAIPVVVA 335 (876)
T ss_pred EEEeccCCCCCceEEEEecCchhhccceEEEEcCCchhhhhhchHHHhhhhhhccccCcccceeeccCC-CCceeeEEEe
Confidence 78876554 8999999999999999999999998631 1 12 344689999 6999999999
Q ss_pred CCccccCCCCceeecCCCChhhHHHHHHhCCCcee----ecCCCCcccccccccCC-CCHHHHHHHHHHHHHHCCCeeee
Q 003578 316 KYVDKEFGTGVLKISPGHDHNDYLLARKLGLPILN----VMNKDGTLNEVAGLFRG-LDRFEARKKLWSDLEETGLAVKK 390 (809)
Q Consensus 316 ~~V~~~~GTG~v~~~P~h~~~D~~~~~~~~l~~~~----~~~~~G~~~~~~g~~~G-~~~~~a~~~i~~~L~~~g~~~~~ 390 (809)
+||..-+|||++|.||+|+.+|++++++.|+..+. +.+.+|+.++. +.++| +.+.+|+.+|++.++.+|++-..
T Consensus 336 ~~v~~~~gt~a~m~~P~hd~rD~ela~~~~~~~~~~~~~~f~~~~K~~~~-~~~tn~~~~q~a~~~l~~~~~~~g~g~~~ 414 (876)
T KOG0435|consen 336 DYVLDPYGTGAVMGAPGHDQRDKELAQKIGIKWIICIEVIFTNFGKKNEQ-KAFTNLDIRQNAALKLFQFAERKGVGGYV 414 (876)
T ss_pred chhccCCCcceeeeccCcccchhHHHhcccceeEEEEeeeecchhhhhcc-ccccchhHHHHHHHHHHHHHHhcCCCcce
Confidence 99999999999999999999999999997764332 34566665543 45688 55678999999999998876443
Q ss_pred ecccccCcccccCCCeeEEeeccceeeeccHHHHHHHHHHhcCCceEecchhHHHHHHHHhcCCceeeeccccccceeeE
Q 003578 391 EPHTLRVPRSQRGGEVIEPLVSKQWFVTMEPLAEKALHAVEKGELTIMPERFEKIYNHWLSNIKDWCISRQLWWGHRIPV 470 (809)
Q Consensus 391 ~~~~~~~p~c~r~~~~i~~~~~~qwfl~~~~~~~~~~~~~~~~~~~~~P~~~~~~~~~~l~~l~Dw~ISRq~~WG~piP~ 470 (809)
-.+ .|+||.||||||||+|||+
T Consensus 415 vs~----------------------------------------------------------kLkDWLiSRQRyWGTPIPi 436 (876)
T KOG0435|consen 415 VSY----------------------------------------------------------KLKDWLISRQRYWGTPIPI 436 (876)
T ss_pred ecc----------------------------------------------------------hhhhhhhhhhhccCCCcce
Confidence 322 5799999999999999999
Q ss_pred EEEcCCcccEEEcCChhHH----------------HHHHhh----hc-CCCccccccCCccceeecccCccceecCCCCC
Q 003578 471 WYIVGKEEEYIVARNADEA----------------LEKAHQ----KY-GKNVEIYQDPDVLDTWFSSALWPFSTLGWPDV 529 (809)
Q Consensus 471 ~~~~~~~~~~~~~~~~~~~----------------~~~~~~----~~-~~~~~~~~~~dvld~Wfds~~~~~~~~~~~~~ 529 (809)
.+|+.+ +.. +-.++++ +.++.+ .| .++...+||+||||||+||+ |||.++-.|.+
T Consensus 437 vhc~~c-G~v--pVpes~LPV~LP~l~~~~~kG~Pls~~~e~vn~~cP~cg~pAkRETDTMDTFvDSs-WYYlRylDpkN 512 (876)
T KOG0435|consen 437 VHCDDC-GAV--PVPESELPVTLPELNDFTPKGPPLSKADEWVNVDCPRCGEPAKRETDTMDTFVDSS-WYYLRYLDPKN 512 (876)
T ss_pred EEcCCC-Ccc--cCcHHHCCcccccccccCCCCCcccchhhheeccCccCCCcccccccccchhhccc-eeeEeecCCCC
Confidence 999653 221 1111111 111111 11 12447899999999999998 88887777776
Q ss_pred Chh-----hhhhcCCCcEEEee--ehhHHhHHHHHHHHHHH----hcCCCCceeEEEeeeEEcc------CC--------
Q 003578 530 SAD-----DFKKFYPTTMLETG--HDILFFWVARMVMMGIE----FTGSVPFSHVYLHGLIRDS------QG-------- 584 (809)
Q Consensus 530 ~~~-----~~~~~~p~d~~~~G--~Di~~~w~~~~~~~~~~----l~~~~Pf~~v~~hg~vld~------~G-------- 584 (809)
... .-.+|.|+|+|++| |.++|..++|++.--+. ..+.+||++++.+|+|+.. .|
T Consensus 513 ~e~~~d~a~a~k~MPVDvYIGG~EHAvlHLlYaRF~~kFl~di~~~~t~EPF~~Li~QGmV~G~tf~~~~sG~yl~~~ev 592 (876)
T KOG0435|consen 513 PEEPFDKAKAKKNMPVDVYIGGKEHAVLHLLYARFIAKFLKDIGVVSTAEPFTKLITQGMVRGKTFRTKESGKYLGPEEV 592 (876)
T ss_pred cccccchhhhhccCceeEEeccHHHHHHHHHHHHHHHHHHhhcCCCcCCCcHHHHHhhhcccceEEecCCCCccCCHHHh
Confidence 532 34578999999999 66788778877653332 2346899999999999721 12
Q ss_pred -----------------------CcccccccCccChhhHHHhhCCchHHHHHhhCCC-CCcccccHHHHHHHHHHHHHHH
Q 003578 585 -----------------------RKMSKTLGNVIDPIDTIKEFGADALRFTISLGTA-GQDLSLSIERLTANKAFTNKLW 640 (809)
Q Consensus 585 -----------------------~KMSKS~GN~I~p~dli~~ygaD~lR~~ll~~~~-~~d~~fs~~~l~~~~~~~~kl~ 640 (809)
+|||||++|+|+|.+++.+||+|++|+|++...+ ..+++|+++.+.+..+++.|+|
T Consensus 593 ~~~nd~~~~~vlk~~~e~~v~t~eKMSKSK~NGVdP~~~v~~yG~D~tRl~ilf~ap~~~~~nW~es~i~Gi~rwl~riw 672 (876)
T KOG0435|consen 593 QQVNDHQNKFVLKNDKEVVVVTYEKMSKSKHNGVDPADVVLEYGVDTTRLYILFAAPPRDPINWNESAIPGIKRWLQRIW 672 (876)
T ss_pred hhhcCCcceeEecCCCcceeeeHHHhhhcccCCCCHHHHHHHhCchHHHHHHHhhCCcccccccccccchhHHHHHHHHH
Confidence 6999999999999999999999999999998877 9999999999999999999999
Q ss_pred HHHHHHHHhCCCCCchhhHHHHhhhccchhhhhcCCCchhHHHHHHHHHHHHHHHHHhh-cCChHHHHHHHHHHHHHhhH
Q 003578 641 NAGKFILQNLPSQNDISRWEILLAYKFDEEECLCKAPLPECWVVSKLHMLIDTVTASYD-KYFFGDVGRETYDFFWSDFA 719 (809)
Q Consensus 641 N~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~~d~~il~~l~~~~~~v~~a~e-~~~f~~a~~~i~~f~~~~~~ 719 (809)
++...+...-+.... .+ .....+.....++.+.+..+.++++|+..|+ .+.++.|+..+|.|. +.+.
T Consensus 673 ~l~~~~~~ar~~g~~-~d----------~~~~td~~dae~~kl~~~~n~fi~~vt~~~e~~~slNtaIS~~m~lt-N~l~ 740 (876)
T KOG0435|consen 673 ALVSQILQARDDGKA-KD----------LKKLTDGFDAETRKLKETYNFFIKQVTEHYEVLFSLNTAISDMMGLT-NALK 740 (876)
T ss_pred HHHHHHHHHHhcCCc-cc----------ccccccccchhHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHH-HHHH
Confidence 998776654221111 00 0000111233566799999999999999997 678999999999997 3443
Q ss_pred HHHHHHhhhhhhcCCCcHHHHHHHHHHHHHHHHHHHHhccchhHHHHHHHHHhccCCCce-EecCCCCCCC
Q 003578 720 DWYIEASKARLYRSEYDSDAIIAQAVLLYIFENILKLLHPFMPFVTEELWQSLRKRKEAL-IVSPWPQTSL 789 (809)
Q Consensus 720 n~Yi~~~k~~l~~~~~~~~~~~~~~~l~~vl~~l~~lL~P~~P~~aeeiw~~L~~~~~sv-~~~~wP~~~~ 789 (809)
.-+ |.-+.. ......+++.+++||+|++||+|+|+|+.|+... ++ ....||+.+.
T Consensus 741 ~a~----k~~~~h----------~~~~~~al~~lv~mlaP~aPh~asE~Ws~l~~~~-~~~~~~~WP~vd~ 796 (876)
T KOG0435|consen 741 KAL----KIVLVH----------SPEFERALEALVIMLAPFAPHVASELWSALANDL-SWVSDVKWPEVDP 796 (876)
T ss_pred Hhh----hhhhhc----------ChHHHHHHHHHHHHHhccCchhHHHHHHHHhccc-cchhccCCccCCh
Confidence 332 211111 1123456788999999999999999999998653 33 3336999884
No 29
>PRK12268 methionyl-tRNA synthetase; Reviewed
Probab=100.00 E-value=4.5e-89 Score=797.78 Aligned_cols=505 Identities=23% Similarity=0.340 Sum_probs=418.2
Q ss_pred CCEEEeCCCCCCCCCCcchhhHHH-HHHHHHHHHHHHCCCcccccCCCCCCCCchHHHHHHHHHHcCCCccccCHHHHHH
Q 003578 90 DPFVISMPPPNVTGSLHMGHAMFV-TLEDIMVRYHRMKGRPTLWLPGTDHAGIATQLVVEKMLAAEGIKRVELSRDEFTK 168 (809)
Q Consensus 90 ~~f~i~~~pPy~nG~lHiGH~~~~-~~~Di~~Ry~rm~G~~V~~~~G~D~~Gl~~~~~~e~~~~~~g~~~~~~~~~~f~~ 168 (809)
++|+|++|||||||.|||||++++ +++|+++||+||+|++|+|++|+|+||++|+.++ +++|+++.
T Consensus 3 ~~~~i~~~~py~ng~~HiGH~~~~~~~~D~~~R~~r~~G~~v~~~~g~d~~g~~i~~~a----~~~g~~~~--------- 69 (556)
T PRK12268 3 MRILITSAWPYANGPLHLGHLAGSGLPADVFARYQRLKGNEVLFVSGSDEHGTPIELAA----KKEGVTPQ--------- 69 (556)
T ss_pred CcEEEecCCCCCCCCccccccccchhHHHHHHHHHHhcCCceEecCcCCCcccHHHHHH----HHcCCCHH---------
Confidence 579999999999999999999997 9999999999999999999999999999976555 45688865
Q ss_pred HHHHHHHHHHHHHHHHHHHhcccccCCCccccCChhhHHHHHHHHHHHHHcCceeecCcccccCCCCCcccCcccccccc
Q 003578 169 RVWEWKEKYGGTITSQIKRLGASCDWTRERFTLDEQLSRAVVEAFIRLHEKGLIYQGSYMVNWSPNLQTAVSDLEVEYSE 248 (809)
Q Consensus 169 ~~~~~~~~~~~~~~~~l~~lgi~~Dw~~~~~T~d~~~~~~v~~~f~~L~~~Gliy~~~~~v~w~p~~~t~lsd~Ev~~~~ 248 (809)
++++++.+.|++++++||+++|+ .+.|+||+|.+.++++|.+|+++|+||++.++|+|||.|+|+|++..|.
T Consensus 70 ---~~~~~~~~~~~~~~~~l~i~~d~--~~~t~~~~~~~~~~~~~~~L~~~G~~y~~~~~~~~~~~~~~~l~~~~v~--- 141 (556)
T PRK12268 70 ---ELADKYHEEHKEDFKKLGISYDL--FTRTTSPNHHEVVQEFFLKLYENGYIYKKTIEQAYCPSDGRFLPDRYVE--- 141 (556)
T ss_pred ---HHHHHHHHHHHHHHHHcCCcCCC--CcCCCCHHHHHHHHHHHHHHHHCCCeEEeeeEEEecCCCCcCcCcccee---
Confidence 56789999999999999998773 3559999999999999999999999999999999999999999984331
Q ss_pred CCCceEEEEEEecCCCeeEEEEecCCccccCCcEEEECCCCchhhhcccCeeecCCCCCCeeeEEecCCccccCCCCcee
Q 003578 249 EPGTLYYIKYRVAGRSDFLTIATTRPETLFGDVALAVNPQDEHYSQFIGMMAIVPMTYGRHVPIISDKYVDKEFGTGVLK 328 (809)
Q Consensus 249 ~~~~~~~~~f~~~~~~~~l~v~Tt~petl~~~~av~v~p~~~~y~~l~g~~~~~P~~~~~~vpi~~~~~V~~~~GTG~v~ 328 (809)
|+
T Consensus 142 --------------------------------------------------------------------------g~---- 143 (556)
T PRK12268 142 --------------------------------------------------------------------------GT---- 143 (556)
T ss_pred --------------------------------------------------------------------------cc----
Confidence 22
Q ss_pred ecCCCChhhHHHHHHhCCCceeecCCCCcccccccccCCCCHHHHHHHHHHHHHHCCCeeeeecccccCcccccCCCeeE
Q 003578 329 ISPGHDHNDYLLARKLGLPILNVMNKDGTLNEVAGLFRGLDRFEARKKLWSDLEETGLAVKKEPHTLRVPRSQRGGEVIE 408 (809)
Q Consensus 329 ~~P~h~~~D~~~~~~~~l~~~~~~~~~G~~~~~~g~~~G~~~~~a~~~i~~~L~~~g~~~~~~~~~~~~p~c~r~~~~i~ 408 (809)
||.|+. .+.+|.+||.||.+ .++.++..|+|++||++++
T Consensus 144 -cp~c~~----------------~~~~G~~ce~cg~~------------------------~~~~~l~~p~~~~~~~~~e 182 (556)
T PRK12268 144 -CPYCGY----------------EGARGDQCDNCGAL------------------------LDPTDLINPRSKISGSTPE 182 (556)
T ss_pred -CCCCCC----------------cccCCchhhhcccc------------------------CChHHhcCCccccCCCcCe
Confidence 444332 24589999999874 2444567799999999999
Q ss_pred EeeccceeeeccHHHHHHHHHHhcCCceEecchhHHHHHHHHh-cCCceeeeccccccceeeEEEEcCCcccEEEcCChh
Q 003578 409 PLVSKQWFVTMEPLAEKALHAVEKGELTIMPERFEKIYNHWLS-NIKDWCISRQLWWGHRIPVWYIVGKEEEYIVARNAD 487 (809)
Q Consensus 409 ~~~~~qwfl~~~~~~~~~~~~~~~~~~~~~P~~~~~~~~~~l~-~l~Dw~ISRq~~WG~piP~~~~~~~~~~~~~~~~~~ 487 (809)
++.++||||++++++++++++++ ++.++|+..++++.+||+ +++|||||||++||+||| |.+.
T Consensus 183 ~~~~~qwF~~l~~~~~~l~~~~~--~~~~~p~~~~~~~~~~l~~~l~Dw~ISR~~~WGipiP-~~~~------------- 246 (556)
T PRK12268 183 FRETEHFFLDLPAFAERLRAWIE--SSGDWPPNVLNFTLNWLKEGLKPRAITRDLDWGIPVP-WPGF------------- 246 (556)
T ss_pred EEecceEEEEhHHHHHHHHHHHh--hccCCCHHHHHHHHHHHhCCCCCcCceeeCCCCeeCC-CCCC-------------
Confidence 99999999999999999999997 468999999999999998 999999999999999999 5431
Q ss_pred HHHHHHhhhcCCCccccccCCccceeecccCccceecC-CCCC--ChhhhhhcC----CCcEEEeeehhHHhHHHHHHHH
Q 003578 488 EALEKAHQKYGKNVEIYQDPDVLDTWFSSALWPFSTLG-WPDV--SADDFKKFY----PTTMLETGHDILFFWVARMVMM 560 (809)
Q Consensus 488 ~~~~~~~~~~~~~~~~~~~~dvld~Wfds~~~~~~~~~-~~~~--~~~~~~~~~----p~d~~~~G~Di~~~w~~~~~~~ 560 (809)
+..++|||||+.+.|++..+ +... +..+|..|| |.+++++|+||++||....-++
T Consensus 247 ------------------~~~~iyvW~da~~~y~~~~~~~~~~~g~~~~~~~~w~ds~~~~~~~~G~D~~~Fh~~~~p~~ 308 (556)
T PRK12268 247 ------------------EGKVFYVWFDAVIGYISASKEWAERTGDPEAWKEFWLDPETKSYYFIGKDNIPFHSIIWPAM 308 (556)
T ss_pred ------------------CCcEEEEeehHhhHHHHHHHHHHHhcCCchHHHHHhCCCCCeEEEEEeeccCcchHHHHHHH
Confidence 23689999999888876533 2221 124688888 7789999999998876443332
Q ss_pred HHHhc--CCCCceeEEEeeeEEccCCCcccccccCccChhhHHHhhCCchHHHHHhhCCC-CCcccccHHHHHH--HHHH
Q 003578 561 GIEFT--GSVPFSHVYLHGLIRDSQGRKMSKTLGNVIDPIDTIKEFGADALRFTISLGTA-GQDLSLSIERLTA--NKAF 635 (809)
Q Consensus 561 ~~~l~--~~~Pf~~v~~hg~vld~~G~KMSKS~GN~I~p~dli~~ygaD~lR~~ll~~~~-~~d~~fs~~~l~~--~~~~ 635 (809)
..+.. .++| +++++||+++ .+|+|||||+||+|+|.|++++||+|++|||+++.++ ++|++|+++.+.. ++++
T Consensus 309 l~~~~~~~~~P-~~v~~~G~v~-~~G~KMSKS~GN~I~p~dli~~yGaDalR~~ll~~~~~~~d~~f~~~~~~~~~~~~~ 386 (556)
T PRK12268 309 LLGSGEPLKLP-DEIVSSEYLT-LEGGKFSKSRGWGIWVDDALERYPPDYLRYYLAANAPENSDTDFTWEEFVRRVNSEL 386 (556)
T ss_pred HHhcCCCCCCC-CEeeccCCEE-ECCeeeccCCCcccCHHHHHHHcCcHHHHHHHHhcCCCCCCCCCCHHHHHHHHhHHh
Confidence 22222 4566 7999999997 6999999999999999999999999999999998877 8999999999865 6788
Q ss_pred HHHHHHHHHHHHHhCCCCCchhhHHHHhhhccchhhhhcCCCchhHHHHHHHHHHHHHHHHHhhcCChHHHHHHHHHHHH
Q 003578 636 TNKLWNAGKFILQNLPSQNDISRWEILLAYKFDEEECLCKAPLPECWVVSKLHMLIDTVTASYDKYFFGDVGRETYDFFW 715 (809)
Q Consensus 636 ~~kl~N~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~~d~~il~~l~~~~~~v~~a~e~~~f~~a~~~i~~f~~ 715 (809)
+++++|+++++...+..... ...+...++..|+|++++++++++.+.++|++|+|+.|++.+++|+
T Consensus 387 ~~~l~n~~~r~~~~~~~~~~-------------~~~~~~~~~~~d~~ll~~l~~~~~~v~~~~~~~~~~~a~~~l~~~~- 452 (556)
T PRK12268 387 ADKYGNLVNRVLSFIEKYFG-------------GIVPPGELGDEDRELIAEAEALFKEVGELLEAGEFKKALEEIMELA- 452 (556)
T ss_pred hhhHHHHHHHHHHHHHHhcC-------------CcCCCCcCCcccHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHH-
Confidence 99999987665543211000 0000123466799999999999999999999999999999999998
Q ss_pred HhhHHHHHHHhhhhhhcCCCcHHHHHHHHHHHHHHHHHHHHhccchhHHHHHHHHHhccCCCceEecCCCCC
Q 003578 716 SDFADWYIEASKARLYRSEYDSDAIIAQAVLLYIFENILKLLHPFMPFVTEELWQSLRKRKEALIVSPWPQT 787 (809)
Q Consensus 716 ~~~~n~Yi~~~k~~l~~~~~~~~~~~~~~~l~~vl~~l~~lL~P~~P~~aeeiw~~L~~~~~sv~~~~wP~~ 787 (809)
+++|+|++..|+|...+++......++.++..+++.+++||+|||||+||+||++|+. +++..+.||..
T Consensus 453 -~~~n~yi~~~kpw~~~~~~~~~~~~~l~~~~~~l~~~~~lL~P~~P~~aeei~~~Lg~--~~~~~~~w~~~ 521 (556)
T PRK12268 453 -REANKYLDEKAPWKLAKTDRERAATVLYTALNLVRLLAVLLYPFLPFSAQKIWEMLGG--ENIEKLTWESL 521 (556)
T ss_pred -HHHHHHHHcCCChhhhcCCHHHHHHHHHHHHHHHHHHHHHhhCccchHHHHHHHHhCC--CCCcccchhhh
Confidence 5999999999999765533333445566777889999999999999999999999986 25667788864
No 30
>TIGR00398 metG methionyl-tRNA synthetase. The methionyl-tRNA synthetase (metG) is a class I amino acyl-tRNA ligase. This model appears to recognize the methionyl-tRNA synthetase of every species, including eukaryotic cytosolic and mitochondrial forms. The UPGMA difference tree calculated after search and alignment according to this model shows an unusual deep split between two families of MetG. One family contains forms from the Archaea, yeast cytosol, spirochetes, and E. coli, among others. The other family includes forms from yeast mitochondrion, Synechocystis sp., Bacillus subtilis, the Mycoplasmas, Aquifex aeolicus, and Helicobacter pylori. The E. coli enzyme is homodimeric, although monomeric forms can be prepared that are fully active. Activity of this enzyme in bacteria includes aminoacylation of fMet-tRNA with Met; subsequent formylation of the Met to fMet is catalyzed by a separate enzyme. Note that the protein from Aquifex aeolicus is split into an alpha (large) and beta (sma
Probab=100.00 E-value=1.4e-87 Score=780.98 Aligned_cols=488 Identities=27% Similarity=0.406 Sum_probs=417.9
Q ss_pred EEEeCCCCCCCCCCcchhhHHHHHHHHHHHHHHHCCCcccccCCCCCCCCchHHHHHHHHHHcCCCccccCHHHHHHHHH
Q 003578 92 FVISMPPPNVTGSLHMGHAMFVTLEDIMVRYHRMKGRPTLWLPGTDHAGIATQLVVEKMLAAEGIKRVELSRDEFTKRVW 171 (809)
Q Consensus 92 f~i~~~pPy~nG~lHiGH~~~~~~~Di~~Ry~rm~G~~V~~~~G~D~~Gl~~~~~~e~~~~~~g~~~~~~~~~~f~~~~~ 171 (809)
|+|++|||||||.|||||+++++.+|+++||+||+|++|++++|+|+||++|+.+ ++++|+++.
T Consensus 1 ~~it~~~P~~ng~lHiGH~~~~~~aDvl~R~~r~~G~~V~~v~g~D~~g~~i~~~----a~~~g~~~~------------ 64 (530)
T TIGR00398 1 ILITTALPYANGKPHLGHAYTTILADVYARYKRLRGYEVLFVCGTDEHGTKIELK----AEQEGLTPK------------ 64 (530)
T ss_pred CEEecCCCCCCCCcccchhHHHHHHHHHHHHHHhcCCeEEEecccCCCCcHHHHH----HHHcCCCHH------------
Confidence 6899999999999999999999999999999999999999999999999996554 456788765
Q ss_pred HHHHHHHHHHHHHHHHhccccc-CCCccccCChhhHHHHHHHHHHHHHcCceeecCcccccCCCCCcccCccccccccCC
Q 003578 172 EWKEKYGGTITSQIKRLGASCD-WTRERFTLDEQLSRAVVEAFIRLHEKGLIYQGSYMVNWSPNLQTAVSDLEVEYSEEP 250 (809)
Q Consensus 172 ~~~~~~~~~~~~~l~~lgi~~D-w~~~~~T~d~~~~~~v~~~f~~L~~~Gliy~~~~~v~w~p~~~t~lsd~Ev~~~~~~ 250 (809)
++++++.+.+++++++||+++| |.+ |+++.|.+.++++|.+|+++|+||+++++|+|||.|+|+|+|.+|+
T Consensus 65 e~~~~~~~~~~~~l~~LgI~~D~~~~---t~~~~~~~~v~~~~~~L~~kG~iY~~~~~v~~~~~~~~~l~~~~v~----- 136 (530)
T TIGR00398 65 ELVDKYHEEFKDDWKWLNISFDRFIR---TTDEEHKEIVQKIFQKLKENGYIYEKEIKQLYCPECEMFLPDRYVE----- 136 (530)
T ss_pred HHHHHHHHHHHHHHHHhCCCCCCCcc---CCCHHHHHHHHHHHHHHHHCCCEEEeeeEEEecCCCCcCCchhhhc-----
Confidence 4567899999999999999998 344 8999999999999999999999999999999999999999995441
Q ss_pred CceEEEEEEecCCCeeEEEEecCCccccCCcEEEECCCCchhhhcccCeeecCCCCCCeeeEEecCCccccCCCCceeec
Q 003578 251 GTLYYIKYRVAGRSDFLTIATTRPETLFGDVALAVNPQDEHYSQFIGMMAIVPMTYGRHVPIISDKYVDKEFGTGVLKIS 330 (809)
Q Consensus 251 ~~~~~~~f~~~~~~~~l~v~Tt~petl~~~~av~v~p~~~~y~~l~g~~~~~P~~~~~~vpi~~~~~V~~~~GTG~v~~~ 330 (809)
| .|
T Consensus 137 ------------------------------------------------------------------------g-----~c 139 (530)
T TIGR00398 137 ------------------------------------------------------------------------G-----TC 139 (530)
T ss_pred ------------------------------------------------------------------------C-----CC
Confidence 2 25
Q ss_pred CCCChhhHHHHHHhCCCceeecCCCCcccccccccCCCCHHHHHHHHHHHHHHCCCeeeeecccccCcccccCCCeeEEe
Q 003578 331 PGHDHNDYLLARKLGLPILNVMNKDGTLNEVAGLFRGLDRFEARKKLWSDLEETGLAVKKEPHTLRVPRSQRGGEVIEPL 410 (809)
Q Consensus 331 P~h~~~D~~~~~~~~l~~~~~~~~~G~~~~~~g~~~G~~~~~a~~~i~~~L~~~g~~~~~~~~~~~~p~c~r~~~~i~~~ 410 (809)
|.|+.. |.+|.+|++||.+ .++.++.+|+|+|||++++++
T Consensus 140 p~c~~~----------------~~~g~~ce~cg~~------------------------~~~~~l~~p~~~~~~~~~e~~ 179 (530)
T TIGR00398 140 PKCGSE----------------DARGDHCEVCGRH------------------------LEPTELINPRCKICGAKPELR 179 (530)
T ss_pred CCCCCc----------------ccccchhhhcccc------------------------CCHHHhcCCccccCCCcceEE
Confidence 666554 4589999999964 577888999999999999999
Q ss_pred eccceeeeccHHHHHHHHHHhcCC-ceEecchhHHHHHHHHhc-CCceeeecccc-ccceeeEEEEcCCcccEEEcCChh
Q 003578 411 VSKQWFVTMEPLAEKALHAVEKGE-LTIMPERFEKIYNHWLSN-IKDWCISRQLW-WGHRIPVWYIVGKEEEYIVARNAD 487 (809)
Q Consensus 411 ~~~qwfl~~~~~~~~~~~~~~~~~-~~~~P~~~~~~~~~~l~~-l~Dw~ISRq~~-WG~piP~~~~~~~~~~~~~~~~~~ 487 (809)
.++||||+++++++++++++++++ ..+.|+..++++.+||++ ++|||||||++ ||+|||.|
T Consensus 180 ~~~~~f~~l~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~d~~iSR~~~~WGipvP~~---------------- 243 (530)
T TIGR00398 180 DSEHYFFRLSAFEKELEEWIRKNPESGSPASNVKNKAQNWLKGGLKDLAITRDLVYWGIPVPND---------------- 243 (530)
T ss_pred ecceEEEEhHHHHHHHHHHHHhCCccCCCcHHHHHHHHHHHhCCCCCccccCcCCCCCeeCCCC----------------
Confidence 999999999999999999998643 455688889999999976 99999999999 99999953
Q ss_pred HHHHHHhhhcCCCccccccCCccceeecccCccceecCCCCCChhhhhhcCCCc-----EEEeeehhHHh----HHHHHH
Q 003578 488 EALEKAHQKYGKNVEIYQDPDVLDTWFSSALWPFSTLGWPDVSADDFKKFYPTT-----MLETGHDILFF----WVARMV 558 (809)
Q Consensus 488 ~~~~~~~~~~~~~~~~~~~~dvld~Wfds~~~~~~~~~~~~~~~~~~~~~~p~d-----~~~~G~Di~~~----w~~~~~ 558 (809)
+.+|+|||||++++|++.++++.....+|++|||.| ++++|+||++| |++.++
T Consensus 244 ------------------~~~~~yvW~da~~~y~~~~~~~~~~~~~~~~~w~~~~~~~~v~~~G~Di~~~h~~~~~a~l~ 305 (530)
T TIGR00398 244 ------------------PNKVVYVWFDALIGYISSLGILSGDTEDWKKWWNNDEDAELIHFIGKDIVRFHTIYWPAMLM 305 (530)
T ss_pred ------------------CCcEEEEeecchHHhHhhhccccCChhhHHHhCCCCCCceEEEEEecccchhHHHHHHHHHH
Confidence 236899999999999998887754446799999999 99999999986 444333
Q ss_pred HHHHHhcCCCCceeEEEeeeEEccCCCcccccccCccChhhHHHhhCCchHHHHHhhCCC-CCcccccHHHHHH--HHHH
Q 003578 559 MMGIEFTGSVPFSHVYLHGLIRDSQGRKMSKTLGNVIDPIDTIKEFGADALRFTISLGTA-GQDLSLSIERLTA--NKAF 635 (809)
Q Consensus 559 ~~~~~l~~~~Pf~~v~~hg~vld~~G~KMSKS~GN~I~p~dli~~ygaD~lR~~ll~~~~-~~d~~fs~~~l~~--~~~~ 635 (809)
+++ ..|++++++||+++ .+|+|||||+||+|+|.|++++||+|++|||+++..+ ++|++|+++.+.. ++++
T Consensus 306 ~~~-----~~~~~~~~~~g~v~-~~g~KmSKS~Gn~i~~~d~i~~~g~D~lR~~l~~~~~~~~d~~f~~~~l~~~~n~~l 379 (530)
T TIGR00398 306 GLG-----LPLPTQVFSHGYLT-VEGGKMSKSLGNVVDPSDLLARFGADILRYYLLKERPLGKDGDFSWEDFVERVNADL 379 (530)
T ss_pred hCC-----CCCCCEEEeeccEE-ECCceecccCCceecHHHHHHHcCchHHHHHHhhCCCCCCCCCCCHHHHHHHHHHHH
Confidence 322 34679999999998 4599999999999999999999999999999999876 9999999999987 4789
Q ss_pred HHHHHHHHHHHHHhCCCCCchhhHHHHhhhccchhhhhcCCCchhHHHHHHHHHHHHHHHHHhhcCChHHHHHHHHHHHH
Q 003578 636 TNKLWNAGKFILQNLPSQNDISRWEILLAYKFDEEECLCKAPLPECWVVSKLHMLIDTVTASYDKYFFGDVGRETYDFFW 715 (809)
Q Consensus 636 ~~kl~N~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~~d~~il~~l~~~~~~v~~a~e~~~f~~a~~~i~~f~~ 715 (809)
+++++|+++++...+..... + ...........|+|++++++++.+.+.+++++|+|+.|++.+++|+
T Consensus 380 ~~~l~n~~~r~~~~~~~~~~----------~--~~~~~~~~~~~d~~ll~~l~~~~~~v~~a~e~~~~~~a~~~l~~l~- 446 (530)
T TIGR00398 380 ANKLGNLLNRTLGFIKKYFN----------G--VLPSEDITDEEDKKLLKLINEALEQIDEAIESFEFRKALREIMKLA- 446 (530)
T ss_pred HHHHHHHHHHHHHHHHHhcC----------C--cCCCCcccchhhHHHHHHHHHHHHHHHHHHHccCHHHHHHHHHHHH-
Confidence 99999998876654321000 0 0000112345799999999999999999999999999999999998
Q ss_pred HhhHHHHHHHhhhhhhcCCCcHHHHHHHHHHHHHHHHHHHHhccchhHHHHHHHHHhccC
Q 003578 716 SDFADWYIEASKARLYRSEYDSDAIIAQAVLLYIFENILKLLHPFMPFVTEELWQSLRKR 775 (809)
Q Consensus 716 ~~~~n~Yi~~~k~~l~~~~~~~~~~~~~~~l~~vl~~l~~lL~P~~P~~aeeiw~~L~~~ 775 (809)
+++|+|++..|+|.+.+++ ..++++++++.++++.++++|+|||||+||+||++|+..
T Consensus 447 -~~~n~Yi~~~kpw~~~~~~-~~~~~~~~~l~~~l~~l~~ll~P~~P~~ae~i~~~L~~~ 504 (530)
T TIGR00398 447 -DRGNKYIDENKPWELFKQS-PRLKELLAVCSMLIRVLSILLYPIMPKLSEKILKFLNFE 504 (530)
T ss_pred -HHHHHHHhcCCChhhcCCh-HHHHHHHHHHHHHHHHHHHHHhCcccHHHHHHHHHhCCC
Confidence 6899999999999887533 256778899999999999999999999999999999854
No 31
>cd00817 ValRS_core catalytic core domain of valyl-tRNA synthetases. Valine amino-acyl tRNA synthetase (ValRS) catalytic core domain. This enzyme is a monomer which aminoacylates the 2'-OH of the nucleotide at the 3' of the appropriate tRNA. The core domain is based on the Rossman fold and is responsible for the ATP-dependent formation of the enzyme bound aminoacyl-adenylate. It contains the characteristic class I HIGH and KMSKS motifs, which are involved in ATP binding. ValRS has an insertion in the core domain, which is subject to both deletions and rearrangements. This editing region hydrolyzes mischarged cognate tRNAs and thus prevents the incorporation of chemically similar amino acids.
Probab=100.00 E-value=5.3e-88 Score=749.08 Aligned_cols=377 Identities=63% Similarity=1.155 Sum_probs=346.0
Q ss_pred CCEEEeCCCCCCCCCCcchhhHHHHHHHHHHHHHHHCCCcccccCCCCCCCCchHHHHHHHHHHcCCCccccCHHHHHHH
Q 003578 90 DPFVISMPPPNVTGSLHMGHAMFVTLEDIMVRYHRMKGRPTLWLPGTDHAGIATQLVVEKMLAAEGIKRVELSRDEFTKR 169 (809)
Q Consensus 90 ~~f~i~~~pPy~nG~lHiGH~~~~~~~Di~~Ry~rm~G~~V~~~~G~D~~Gl~~~~~~e~~~~~~g~~~~~~~~~~f~~~ 169 (809)
++|+|++|||||||.|||||+++++++|+++||+||+|++|+|++|||+||+|||.++++.+...++++.++++++|++.
T Consensus 1 ~~f~i~~~pPy~nG~lHiGH~~~~~~~Dv~~Ry~r~~G~~V~~~~G~D~hG~pie~~a~k~~~~~~~~~~~~~~~~~~~~ 80 (382)
T cd00817 1 PVFVIDTPPPNVTGSLHMGHALNNTIQDIIARYKRMKGYNVLWPPGTDHAGIATQVVVEKKLGIEGKTRHDLGREEFLEK 80 (382)
T ss_pred CcEEEecCCCCCCCcchHHHHHHHHHHHHHHHHHHhcCCcccccCccCCCCChHHHHHHHHhcccccchhcCCHHHHHHH
Confidence 47999999999999999999999999999999999999999999999999999999999887666666778999999999
Q ss_pred HHHHHHHHHHHHHHHHHHhcccccCCCccccCChhhHHHHHHHHHHHHHcCceeecCcccccCCCCCcccCccccccccC
Q 003578 170 VWEWKEKYGGTITSQIKRLGASCDWTRERFTLDEQLSRAVVEAFIRLHEKGLIYQGSYMVNWSPNLQTAVSDLEVEYSEE 249 (809)
Q Consensus 170 ~~~~~~~~~~~~~~~l~~lgi~~Dw~~~~~T~d~~~~~~v~~~f~~L~~~Gliy~~~~~v~w~p~~~t~lsd~Ev~~~~~ 249 (809)
|++|++++++.+++++++||+++||++.+.|+||.|.+.|+++|.+|+++|+||++.++|+|||.|+|+||+.||
T Consensus 81 ~~~~~~~~~~~~~~~~~~lgi~~Dw~~~~~T~~~~~~~~v~~~f~~L~~~G~iy~~~~~~~yc~~~~t~l~~~ev----- 155 (382)
T cd00817 81 CWEWKEESGGKIREQLKRLGASVDWSREYFTMDPGLSRAVQEAFVRLYEKGLIYRDNRLVNWCPKLRTAISDIEV----- 155 (382)
T ss_pred HHHHHHHHHHHHHHHHHHhCceeecCCCcCCCCHHHHHHHHHHHHHHHHCCCEEeeeeEEeecCCcCCCCCcchh-----
Confidence 999999999999999999999999999999999999999999999999999999999999999999999998332
Q ss_pred CCceEEEEEEecCCCeeEEEEecCCccccCCcEEEECCCCchhhhcccCeeecCCCCCCeeeEEecCCccccCCCCceee
Q 003578 250 PGTLYYIKYRVAGRSDFLTIATTRPETLFGDVALAVNPQDEHYSQFIGMMAIVPMTYGRHVPIISDKYVDKEFGTGVLKI 329 (809)
Q Consensus 250 ~~~~~~~~f~~~~~~~~l~v~Tt~petl~~~~av~v~p~~~~y~~l~g~~~~~P~~~~~~vpi~~~~~V~~~~GTG~v~~ 329 (809)
T Consensus 156 -------------------------------------------------------------------------------- 155 (382)
T cd00817 156 -------------------------------------------------------------------------------- 155 (382)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred cCCCChhhHHHHHHhCCCceeecCCCCcccccccccCCCCHHHHHHHHHHHHHHCCCeeeeecccccCcccccCCCeeEE
Q 003578 330 SPGHDHNDYLLARKLGLPILNVMNKDGTLNEVAGLFRGLDRFEARKKLWSDLEETGLAVKKEPHTLRVPRSQRGGEVIEP 409 (809)
Q Consensus 330 ~P~h~~~D~~~~~~~~l~~~~~~~~~G~~~~~~g~~~G~~~~~a~~~i~~~L~~~g~~~~~~~~~~~~p~c~r~~~~i~~ 409 (809)
|+|||+++++
T Consensus 156 ----------------------------------------------------------------------c~~cg~~~~~ 165 (382)
T cd00817 156 ----------------------------------------------------------------------CSRSGDVIEP 165 (382)
T ss_pred ----------------------------------------------------------------------cccCCCeEEE
Confidence 8889999999
Q ss_pred eeccceeeeccHHHHHHHHHHhcCCceEecchhHHHHHHHHhcCCceeeeccccccceeeEEEEcCCcccEEEcCChhHH
Q 003578 410 LVSKQWFVTMEPLAEKALHAVEKGELTIMPERFEKIYNHWLSNIKDWCISRQLWWGHRIPVWYIVGKEEEYIVARNADEA 489 (809)
Q Consensus 410 ~~~~qwfl~~~~~~~~~~~~~~~~~~~~~P~~~~~~~~~~l~~l~Dw~ISRq~~WG~piP~~~~~~~~~~~~~~~~~~~~ 489 (809)
+.++||||++++++++++++++++++.|+|+..++++.+||++++|||||||++||+|||+|+|.. ++.+++....++.
T Consensus 166 ~~~~qwf~~l~~~~~~l~~~~~~~~~~~~P~~~~~~~~~~l~~l~Dw~ISR~~~WGipvP~~~~~~-~~~~~~~~~~~~~ 244 (382)
T cd00817 166 LLKPQWFVKVKDLAKKALEAVKEGDIKFVPERMEKRYENWLENIRDWCISRQLWWGHRIPAWYCKD-GGHWVVAREEDEA 244 (382)
T ss_pred EecCeeEEehHHHHHHHHHHHhcCCcEEEChHHHHHHHHHHhhCccceeeeccccCCccceEEeCC-CCcEEecchhHHH
Confidence 999999999999999999999988899999999999999999999999999999999999999965 3445555444444
Q ss_pred HHHHh----hhcCCCccccccCCccceeecccCccceecCCCCCChhhhhhcCCCcEEEeeehhHHhHHHHHHHHHHHhc
Q 003578 490 LEKAH----QKYGKNVEIYQDPDVLDTWFSSALWPFSTLGWPDVSADDFKKFYPTTMLETGHDILFFWVARMVMMGIEFT 565 (809)
Q Consensus 490 ~~~~~----~~~~~~~~~~~~~dvld~Wfds~~~~~~~~~~~~~~~~~~~~~~p~d~~~~G~Di~~~w~~~~~~~~~~l~ 565 (809)
...+. .+|+ +..++++++|+||||||+++|++.++|+.+. ++|+++||+|+|++|+||++||+.++++++.++.
T Consensus 245 ~~~~~~~~~~~~~-~~~~~~~~~v~dvWfds~~~~~~~~~~~~~~-~~~~~~~p~d~~~~G~D~~~~h~~~~l~~~~~~~ 322 (382)
T cd00817 245 IDKAAPEACVPCG-GEELKQDEDVLDTWFSSSLWPFSTLGWPEET-KDLKKFYPTSLLVTGHDIIFFWVARMIMRGLKLT 322 (382)
T ss_pred HHHhccccccCCC-ccCeeECCceeeeeecCCCcHHHHhCCCCcc-hhHhhcCCCCeeeeecCcCchHHHHHHHHHHHhh
Confidence 33331 1222 4478899999999999999999999998765 6799999999999999999999999999998888
Q ss_pred CCCCceeEEEeeeEEccCCCcccccccCccChhhHHHhhCCchHHHHHhhCCC-CCcccc
Q 003578 566 GSVPFSHVYLHGLIRDSQGRKMSKTLGNVIDPIDTIKEFGADALRFTISLGTA-GQDLSL 624 (809)
Q Consensus 566 ~~~Pf~~v~~hg~vld~~G~KMSKS~GN~I~p~dli~~ygaD~lR~~ll~~~~-~~d~~f 624 (809)
++.|++++++||++++.+|+|||||+||+|+|+|++++||+|++|||+++..+ ++|.+|
T Consensus 323 g~~p~~~v~~hg~v~~~~g~KMSKS~Gn~v~~~dll~~~g~Da~R~~ll~~~~~~~D~~f 382 (382)
T cd00817 323 GKLPFKEVYLHGLVRDEDGRKMSKSLGNVIDPLDVIDGYGADALRFTLASAATQGRDINL 382 (382)
T ss_pred CCCchHHeEeeeeEECCCCCCccccCCCCCCHHHHHHhcCcHHHHHHHHhCCCccCCCCC
Confidence 88899999999999989999999999999999999999999999999999887 999876
No 32
>COG0143 MetG Methionyl-tRNA synthetase [Translation, ribosomal structure and biogenesis]
Probab=100.00 E-value=4.3e-87 Score=752.98 Aligned_cols=493 Identities=27% Similarity=0.418 Sum_probs=430.3
Q ss_pred CCCEEEeCCCCCCCCCCcchhhHHHHHHHHHHHHHHHCCCcccccCCCCCCCCchHHHHHHHHHHcCCCccccCHHHHHH
Q 003578 89 SDPFVISMPPPNVTGSLHMGHAMFVTLEDIMVRYHRMKGRPTLWLPGTDHAGIATQLVVEKMLAAEGIKRVELSRDEFTK 168 (809)
Q Consensus 89 ~~~f~i~~~pPy~nG~lHiGH~~~~~~~Di~~Ry~rm~G~~V~~~~G~D~~Gl~~~~~~e~~~~~~g~~~~~~~~~~f~~ 168 (809)
.++|+||+|+|||||+|||||+++++.+||++||+||+|++|+|++|+|+||+||+. +|+++|++|+++
T Consensus 4 ~~~~~VTtalpY~Ng~~HlGH~~~~l~ADv~aRy~Rl~G~~v~fvtGtDeHGt~I~~----~A~~~g~tP~el------- 72 (558)
T COG0143 4 MKKILVTTALPYPNGPPHLGHLYTYLAADVYARYLRLRGYEVFFLTGTDEHGTKIEL----KAEKEGITPQEL------- 72 (558)
T ss_pred CCcEEEecCCCCCCCCcchhhHHHHHHHHHHHHHHHhcCCeEEEEeccCCCCCHHHH----HHHHcCCCHHHH-------
Confidence 478999999999999999999999999999999999999999999999999999654 456789999844
Q ss_pred HHHHHHHHHHHHHHHHHHHhccccc-CCCccccCChhhHHHHHHHHHHHHHcCceeecCcccccCCCCCcccCccccccc
Q 003578 169 RVWEWKEKYGGTITSQIKRLGASCD-WTRERFTLDEQLSRAVVEAFIRLHEKGLIYQGSYMVNWSPNLQTAVSDLEVEYS 247 (809)
Q Consensus 169 ~~~~~~~~~~~~~~~~l~~lgi~~D-w~~~~~T~d~~~~~~v~~~f~~L~~~Gliy~~~~~v~w~p~~~t~lsd~Ev~~~ 247 (809)
++++++.+++.++.|+|++| |.| |+++.|.+.||++|.+|+++|+||.+..++.||+.|++.+.|.+|+
T Consensus 73 -----~d~~~~~~~~~~~~l~IsfD~F~r---Tt~~~h~~~vq~~f~~L~~~G~I~~~~~~~~Yc~~~e~fl~dr~v~-- 142 (558)
T COG0143 73 -----VDKNHEEFKELFKALNISFDNFIR---TTSPEHKELVQEFFLKLYENGDIYLREYEGLYCVSCERFLPDRYVE-- 142 (558)
T ss_pred -----HHHHHHHHHHHHHHhCCccccccc---CCCHHHHHHHHHHHHHHHHCCCEeccceeeeEcccccccccchhee--
Confidence 57899999999999999999 888 9999999999999999999999999999999999999998885552
Q ss_pred cCCCceEEEEEEecCCCeeEEEEecCCccccCCcEEEECCCCchhhhcccCeeecCCCCCCeeeEEecCCccccCCCCce
Q 003578 248 EEPGTLYYIKYRVAGRSDFLTIATTRPETLFGDVALAVNPQDEHYSQFIGMMAIVPMTYGRHVPIISDKYVDKEFGTGVL 327 (809)
Q Consensus 248 ~~~~~~~~~~f~~~~~~~~l~v~Tt~petl~~~~av~v~p~~~~y~~l~g~~~~~P~~~~~~vpi~~~~~V~~~~GTG~v 327 (809)
||
T Consensus 143 ---------------------------------------------------------------------------g~--- 144 (558)
T COG0143 143 ---------------------------------------------------------------------------GT--- 144 (558)
T ss_pred ---------------------------------------------------------------------------cc---
Confidence 33
Q ss_pred eecCCCChhhHHHHHHhCCCceeecCCCCcccccccccCCCCHHHHHHHHHHHHHHCCCeeeeecccccCcccccCCCee
Q 003578 328 KISPGHDHNDYLLARKLGLPILNVMNKDGTLNEVAGLFRGLDRFEARKKLWSDLEETGLAVKKEPHTLRVPRSQRGGEVI 407 (809)
Q Consensus 328 ~~~P~h~~~D~~~~~~~~l~~~~~~~~~G~~~~~~g~~~G~~~~~a~~~i~~~L~~~g~~~~~~~~~~~~p~c~r~~~~i 407 (809)
||.++-+ +..|+.||+||.. ..+..+..|+|++||..+
T Consensus 145 --cp~cg~~----------------~arGD~Ce~Cg~~------------------------~~P~~l~~p~~~i~g~~p 182 (558)
T COG0143 145 --CPKCGGE----------------DARGDQCENCGRT------------------------LDPTELINPVCVISGATP 182 (558)
T ss_pred --CCCcCcc----------------ccCcchhhhccCc------------------------CCchhcCCCeeEeeCCCc
Confidence 5555433 4689999999974 578888999999999999
Q ss_pred EEeeccceeeeccHHHHHHHHHHhcCCceEecchhHHHHHHHHh-cCCceeeec-cccccceeeEEEEcCCcccEEEcCC
Q 003578 408 EPLVSKQWFVTMEPLAEKALHAVEKGELTIMPERFEKIYNHWLS-NIKDWCISR-QLWWGHRIPVWYIVGKEEEYIVARN 485 (809)
Q Consensus 408 ~~~~~~qwfl~~~~~~~~~~~~~~~~~~~~~P~~~~~~~~~~l~-~l~Dw~ISR-q~~WG~piP~~~~~~~~~~~~~~~~ 485 (809)
+.+.+++|||+++++++++++++++++..+.|+..++.+.+||+ +|+|||||| ...||+|+| + .
T Consensus 183 ~~r~~~hyFf~L~~~~~~L~~~~~~~~~~~~p~~~~ne~~~~i~~GL~d~~IsR~~~~WGipvP-----~--~------- 248 (558)
T COG0143 183 EVREEEHYFFRLSKFQDKLLEWYESNPDFIWPANRRNEVLNFLKEGLKDLSITRTDLDWGIPVP-----G--D------- 248 (558)
T ss_pred ccccceeEEEEHHHhHHHHHHHHHhCccccCChHHHHHHHHHHHccCcccceecCCCCCCccCC-----C--C-------
Confidence 99999999999999999999999988878899999999999995 699999999 899999999 1 1
Q ss_pred hhHHHHHHhhhcCCCccccccCCccceeecccCccceecCCCC--CChhhhhhcCCCc----EEEeeehhHHh----HHH
Q 003578 486 ADEALEKAHQKYGKNVEIYQDPDVLDTWFSSALWPFSTLGWPD--VSADDFKKFYPTT----MLETGHDILFF----WVA 555 (809)
Q Consensus 486 ~~~~~~~~~~~~~~~~~~~~~~dvld~Wfds~~~~~~~~~~~~--~~~~~~~~~~p~d----~~~~G~Di~~~----w~~ 555 (809)
...|+|||||+.+.|++.++... ....+|++|||.| +|++|+||++| |++
T Consensus 249 --------------------p~kv~YVWfDAligYisa~~~~~~~~~~~~~~~~W~~~~~e~vhfIGKDii~FHav~wPa 308 (558)
T COG0143 249 --------------------PGKVIYVWFDALIGYISALGELAEIGDDEDFKKFWPADDTELVHFIGKDIIRFHAVYWPA 308 (558)
T ss_pred --------------------CCCEEEEeeccHHHHHHHhcchhccCChHHHHhhCCCCCceEEEEeccccCcchhhHHHH
Confidence 35799999999999999888765 3347899999998 99999999974 888
Q ss_pred HHHHHHHHhcCCCCceeEEEeeeEEccCCCcccccccCccChhhHHHhhCCchHHHHHhhCCC-CCcccccHHHHHH--H
Q 003578 556 RMVMMGIEFTGSVPFSHVYLHGLIRDSQGRKMSKTLGNVIDPIDTIKEFGADALRFTISLGTA-GQDLSLSIERLTA--N 632 (809)
Q Consensus 556 ~~~~~~~~l~~~~Pf~~v~~hg~vld~~G~KMSKS~GN~I~p~dli~~ygaD~lR~~ll~~~~-~~d~~fs~~~l~~--~ 632 (809)
++++.+.. +| +++++|||++ .+|+|||||+||+|+|.+++++||+|++||||+...+ ++|.+||++.+.. |
T Consensus 309 mL~~~~~~----lP-~~i~ahg~l~-~~G~KmSKSrG~~V~~~~~~~~~~~D~lRYyL~~~~p~~~D~dFs~~~f~~rvN 382 (558)
T COG0143 309 MLMAAGLP----LP-TRIFAHGFLT-LEGQKMSKSRGNVVDPDELLEQYGVDALRYYLARELPEGSDGDFSWEDFVERVN 382 (558)
T ss_pred HHHhCCCC----CC-CEEEeeeeEE-ECCccccccCCcEEeHHHHHHHcCchHhHHHHHHhCCCCCCCCCCHHHHHHHHH
Confidence 77665543 46 8999999997 8999999999999999999999999999999999999 9999999999987 8
Q ss_pred HHHHHHHHHHHHHHHHhCCCCCchhhHHHHhhhccchhhhhcCCCchhHHHHHHHHHHHHHHHHHhhcCChHHHHHHHHH
Q 003578 633 KAFTNKLWNAGKFILQNLPSQNDISRWEILLAYKFDEEECLCKAPLPECWVVSKLHMLIDTVTASYDKYFFGDVGRETYD 712 (809)
Q Consensus 633 ~~~~~kl~N~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~~d~~il~~l~~~~~~v~~a~e~~~f~~a~~~i~~ 712 (809)
.++.|+++|++++.++.+.+.... ....... ..+ ..|+.++..+.++...+.++|++++|++|+..+++
T Consensus 383 ~dL~n~lgNl~~R~~~fi~k~~~g---------~vp~~~~-~~~-~~d~~~~~~~~~~~~~~~~~~e~~~~~~Al~~i~~ 451 (558)
T COG0143 383 ADLANKLGNLANRTLGFINKYFDG---------VVPAAGA-PDL-EEDEELLALAREALEAVAEAMEKYEFRKALEEIMA 451 (558)
T ss_pred HHHHHHHHHHHHHHHHHHHhccCC---------cCCcccc-ccc-hhhHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHH
Confidence 999999999998887754322110 0000000 112 56788999999999999999999999999999999
Q ss_pred HHHHhhHHHHHHHhhhhhhcCCC-cHHHHHHHHHHHHHHHHHHHHhccchhHHHHHHHHHhccC
Q 003578 713 FFWSDFADWYIEASKARLYRSEY-DSDAIIAQAVLLYIFENILKLLHPFMPFVTEELWQSLRKR 775 (809)
Q Consensus 713 f~~~~~~n~Yi~~~k~~l~~~~~-~~~~~~~~~~l~~vl~~l~~lL~P~~P~~aeeiw~~L~~~ 775 (809)
++ ..+|.||+..+||...+.+ .++..++..++.++++.++.||+||||.+|++||++|+..
T Consensus 452 l~--~~~N~Yi~~~~PW~l~k~~~~~~~~~vl~~~~~~~r~la~ll~P~mP~~a~ki~~~L~~~ 513 (558)
T COG0143 452 LA--SRANKYIDEQAPWKLAKEDKRERLATVLYLALELVRVLAILLYPFMPETAEKIWDQLGLE 513 (558)
T ss_pred HH--HHHHHHhhcCCCchhhccCcHHHHHHHHHHHHHHHHHHHHHhcCcCcchHHHHHHHhCCc
Confidence 97 7899999999999877643 2344556777888889999999999999999999999864
No 33
>PLN02610 probable methionyl-tRNA synthetase
Probab=100.00 E-value=6.2e-87 Score=790.73 Aligned_cols=493 Identities=20% Similarity=0.291 Sum_probs=414.2
Q ss_pred CCCCCEEEeCCCCCCCCCCcchhhHH-HHHHHHHHHHHHHCCCcccccCCCCCCCCchHHHHHHHHHHcCCCccccCHHH
Q 003578 87 RGSDPFVISMPPPNVTGSLHMGHAMF-VTLEDIMVRYHRMKGRPTLWLPGTDHAGIATQLVVEKMLAAEGIKRVELSRDE 165 (809)
Q Consensus 87 ~~~~~f~i~~~pPy~nG~lHiGH~~~-~~~~Di~~Ry~rm~G~~V~~~~G~D~~Gl~~~~~~e~~~~~~g~~~~~~~~~~ 165 (809)
.+.++|+||+|||||||.|||||+++ ++.+||++||+||+|++|+|++|+|+||+||+.+ |.+.|++|+
T Consensus 14 ~~~~~~~ITt~~pY~Ng~~HlGH~~~~~l~aDv~aRy~r~~G~~v~f~~GtDehG~~i~~~----A~~~g~~p~------ 83 (801)
T PLN02610 14 PGKRNILITSALPYVNNVPHLGNIIGCVLSADVFARYCRLRGYNAIYICGTDEYGTATETK----ALEENCTPK------ 83 (801)
T ss_pred CCCCCEEEeCCCCCCCCCcccchhhhhHHHHHHHHHHHHhCCCceEecccccCCcHHHHHH----HHHcCCCHH------
Confidence 34678999999999999999999997 6779999999999999999999999999996654 456788876
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhccccc-CCCccccCChhhHHHHHHHHHHHHHcCceeecCcccccCCCCCcccCcccc
Q 003578 166 FTKRVWEWKEKYGGTITSQIKRLGASCD-WTRERFTLDEQLSRAVVEAFIRLHEKGLIYQGSYMVNWSPNLQTAVSDLEV 244 (809)
Q Consensus 166 f~~~~~~~~~~~~~~~~~~l~~lgi~~D-w~~~~~T~d~~~~~~v~~~f~~L~~~Gliy~~~~~v~w~p~~~t~lsd~Ev 244 (809)
++++++++.+++++++|||++| |.| |+++.|.++||++|.+|+++|+||++++.++|||.|+|+|+|..|
T Consensus 84 ------e~~d~~~~~~~~~~~~l~i~~D~f~r---T~~~~h~~~vq~~f~~L~~~G~Iy~~~~~~~yc~~~e~fl~d~~v 154 (801)
T PLN02610 84 ------EICDKYHAIHKEVYDWFDISFDKFGR---TSTPQQTEICQAIFKKLMENNWLSENTMQQLYCDTCQKFLADRLV 154 (801)
T ss_pred ------HHHHHHHHHHHHHHHHcCCccccCcc---CCCHHHHHHHHHHHHHHHHCCCEEEeeEEEeecCCCCCCcchHHh
Confidence 4568899999999999999999 555 999999999999999999999999999999999999999999443
Q ss_pred ccccCCCceEEEEEEecCCCeeEEEEecCCccccCCcEEEECCCCchhhhcccCeeecCCCCCCeeeEEecCCccccCCC
Q 003578 245 EYSEEPGTLYYIKYRVAGRSDFLTIATTRPETLFGDVALAVNPQDEHYSQFIGMMAIVPMTYGRHVPIISDKYVDKEFGT 324 (809)
Q Consensus 245 ~~~~~~~~~~~~~f~~~~~~~~l~v~Tt~petl~~~~av~v~p~~~~y~~l~g~~~~~P~~~~~~vpi~~~~~V~~~~GT 324 (809)
. |+
T Consensus 155 --------------------------------------------------------------------------~---G~ 157 (801)
T PLN02610 155 --------------------------------------------------------------------------E---GT 157 (801)
T ss_pred --------------------------------------------------------------------------c---Cc
Confidence 1 33
Q ss_pred CceeecCC--CChhhHHHHHHhCCCceeecCCCCcccccccccCCCCHHHHHHHHHHHHHHCCCeeeeecccccCccccc
Q 003578 325 GVLKISPG--HDHNDYLLARKLGLPILNVMNKDGTLNEVAGLFRGLDRFEARKKLWSDLEETGLAVKKEPHTLRVPRSQR 402 (809)
Q Consensus 325 G~v~~~P~--h~~~D~~~~~~~~l~~~~~~~~~G~~~~~~g~~~G~~~~~a~~~i~~~L~~~g~~~~~~~~~~~~p~c~r 402 (809)
||. |+.+ +.+|..||.||.+ .++.++..|+|.+
T Consensus 158 -----CP~~~C~~~----------------~a~Gd~Ce~Cg~~------------------------~~p~eLi~p~c~~ 192 (801)
T PLN02610 158 -----CPTEGCNYD----------------SARGDQCEKCGKL------------------------LNPTELIDPKCKV 192 (801)
T ss_pred -----CCccccCcc----------------ccccchhhhcccc------------------------CChhhhcCCcccC
Confidence 554 4433 5689999999976 6788999999999
Q ss_pred CCCeeEEeeccceeeeccHHHHHHHHHHhcCCceEecchhH---HHHHHHHh-cCCceeeeccccccceeeEEEEcCCcc
Q 003578 403 GGEVIEPLVSKQWFVTMEPLAEKALHAVEKGELTIMPERFE---KIYNHWLS-NIKDWCISRQLWWGHRIPVWYIVGKEE 478 (809)
Q Consensus 403 ~~~~i~~~~~~qwfl~~~~~~~~~~~~~~~~~~~~~P~~~~---~~~~~~l~-~l~Dw~ISRq~~WG~piP~~~~~~~~~ 478 (809)
||.+++.+.++||||+|++++++++++++++. +.|+... ....+||+ +|+||||||+..||+|+|. +
T Consensus 193 ~g~~~~~~~~~~~ff~Ls~~~~~L~~~~~~~~--~~~~~~~n~~~~~~~~l~~gL~d~~IsR~~~WGipvP~-------~ 263 (801)
T PLN02610 193 CKNTPRIRDTDHLFLELPLLKDKLVEYINETS--VAGGWSQNAIQTTNAWLRDGLKPRCITRDLKWGVPVPL-------E 263 (801)
T ss_pred CCCcceEEEcceEEEEhHHHHHHHHHHHHhCC--CCCCcCHHHHHHHHHHHhCCCCCcceeeecCCcccCCC-------C
Confidence 99999999999999999999999999998654 3454444 45568995 7999999999999999993 2
Q ss_pred cEEEcCChhHHHHHHhhhcCCCccccccCCccceeecccCccceec-CCCCCChhhhhhcCCC--c---EEEeeehhHHh
Q 003578 479 EYIVARNADEALEKAHQKYGKNVEIYQDPDVLDTWFSSALWPFSTL-GWPDVSADDFKKFYPT--T---MLETGHDILFF 552 (809)
Q Consensus 479 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dvld~Wfds~~~~~~~~-~~~~~~~~~~~~~~p~--d---~~~~G~Di~~~ 552 (809)
++ +..|+|||||+.+.|++.+ +|. .+|++|||. | +|++|+||++|
T Consensus 264 ~~-------------------------~~~v~YVWfDAl~~Yis~~~~~~----~~~~~~W~~~~~~~~~hfiGKDi~~f 314 (801)
T PLN02610 264 KY-------------------------KDKVFYVWFDAPIGYVSITACYT----PEWEKWWKNPENVELYQFMGKDNVPF 314 (801)
T ss_pred CC-------------------------CCcEEEEehhhHHHHHHHHhhhh----hHHHHhcCCcccceEEEEEeeecchh
Confidence 11 3579999999999999876 664 358889975 6 79999999986
Q ss_pred ----HHHHHHHHHHHhcCCCCceeEEEeeeEEccCCCcccccccCccChhhHHHh-hCCchHHHHHhhCCC-CCcccccH
Q 003578 553 ----WVARMVMMGIEFTGSVPFSHVYLHGLIRDSQGRKMSKTLGNVIDPIDTIKE-FGADALRFTISLGTA-GQDLSLSI 626 (809)
Q Consensus 553 ----w~~~~~~~~~~l~~~~Pf~~v~~hg~vld~~G~KMSKS~GN~I~p~dli~~-ygaD~lR~~ll~~~~-~~d~~fs~ 626 (809)
|++++++.+..+ .+| +++++|||++ .+|+|||||+||+|+|.++++. ||+|++||||++..+ ++|.+||+
T Consensus 315 H~i~wPa~L~a~g~~~--~~p-~~i~~~g~l~-~eG~KMSKS~GNvV~p~~~i~~~yg~D~lRyyLl~~~p~~~D~dFs~ 390 (801)
T PLN02610 315 HTVMFPSTLLGTGENW--TMM-KTISVTEYLN-YEGGKFSKSKGVGVFGNDAKDTNIPVEVWRYYLLTNRPEVSDTLFTW 390 (801)
T ss_pred HHHHHHHHHHhCCCCc--CCC-CEEEeccCEe-cCCceecCcCCcccCHHHHHhccCCchHhHHHhhhcCCCCCCCcCCH
Confidence 677655544311 234 8999999996 8999999999999999999996 999999999999988 99999999
Q ss_pred HHHHH--HHHHHHHHHHHHHHHHHhCCC-----CCchhhHHHHhhhccchhhhhcCCCchhHHHHHHHHHHHHHHHHHhh
Q 003578 627 ERLTA--NKAFTNKLWNAGKFILQNLPS-----QNDISRWEILLAYKFDEEECLCKAPLPECWVVSKLHMLIDTVTASYD 699 (809)
Q Consensus 627 ~~l~~--~~~~~~kl~N~~~~~~~~l~~-----~~~~~~~~~~~~~~~~~~~~~~~l~~~d~~il~~l~~~~~~v~~a~e 699 (809)
+.+.. |.+++|.|+|+++++...+.. +... . + ..........|+|++++++++++++.++|+
T Consensus 391 ~~f~~~~NsdL~n~lGNlv~R~~~~i~~~~~k~~~g~------v---p--~~~~~~~~~~d~~Ll~~~~~~i~~v~~~me 459 (801)
T PLN02610 391 ADLQAKLNSELLNNLGNFINRVLSFIAKPPGAGYGSV------I---P--DAPGAESHPLTKKLAEKVGKLVEQYVEAME 459 (801)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhccCCc------C---C--CccccccchhhHHHHHHHHHHHHHHHHHHH
Confidence 99987 788999999998887765431 1110 0 0 000011234689999999999999999999
Q ss_pred cCChHHHHHHHHHHHHHhhHHHHHHHhhhhhhcCCCcHHHHHHHHHHHHHHHHHHHHhccchhHHHHHHHHHhccC
Q 003578 700 KYFFGDVGRETYDFFWSDFADWYIEASKARLYRSEYDSDAIIAQAVLLYIFENILKLLHPFMPFVTEELWQSLRKR 775 (809)
Q Consensus 700 ~~~f~~a~~~i~~f~~~~~~n~Yi~~~k~~l~~~~~~~~~~~~~~~l~~vl~~l~~lL~P~~P~~aeeiw~~L~~~ 775 (809)
+|+|+.|++.++++. +++|+||+..+||...+++......++.++.++++.+++||+||||++|++||++|+..
T Consensus 460 ~~~~~~Al~~I~~l~--~~~NkYIe~~kPW~L~k~d~~~l~~vl~~~le~lr~la~LL~PfmP~~aeeI~~~Lg~~ 533 (801)
T PLN02610 460 KVKLKQGLKTAMSIS--SEGNAYLQESQFWKLYKEDKPSCAIVVKTSVGLVYLLACLLEPFMPSFSKEVLKQLNLP 533 (801)
T ss_pred hcCHHHHHHHHHHHH--HHHHHHHHhcCchhhhCCCHHHHHHHHHHHHHHHHHHHHHHhCcccHHHHHHHHHhCCC
Confidence 999999999999985 89999999999997765443345566777888999999999999999999999999854
No 34
>PRK00133 metG methionyl-tRNA synthetase; Reviewed
Probab=100.00 E-value=7e-86 Score=781.00 Aligned_cols=486 Identities=23% Similarity=0.370 Sum_probs=413.5
Q ss_pred CCEEEeCCCCCCCCCCcchhhHHHHHHHHHHHHHHHCCCcccccCCCCCCCCchHHHHHHHHHHcCCCccccCHHHHHHH
Q 003578 90 DPFVISMPPPNVTGSLHMGHAMFVTLEDIMVRYHRMKGRPTLWLPGTDHAGIATQLVVEKMLAAEGIKRVELSRDEFTKR 169 (809)
Q Consensus 90 ~~f~i~~~pPy~nG~lHiGH~~~~~~~Di~~Ry~rm~G~~V~~~~G~D~~Gl~~~~~~e~~~~~~g~~~~~~~~~~f~~~ 169 (809)
++|+|++|||||||.|||||+++++++|+++||+||+|++|+|++|||+||+||+.++ +++|++|.
T Consensus 2 ~~~~itt~~py~ng~~HiGH~~~~l~aDv~aR~~r~~G~~V~~~~g~D~hG~~i~~~A----~~~g~~p~---------- 67 (673)
T PRK00133 2 RKILVTCALPYANGPIHLGHLVEYIQADIWVRYQRMRGHEVLFVCADDAHGTPIMLKA----EKEGITPE---------- 67 (673)
T ss_pred CCEEEeCCCCCCCCcccccchHHHHHHHHHHHHHHhcCCeeEEeCccCCCChHHHHHH----HHcCCCHH----------
Confidence 5799999999999999999999999999999999999999999999999999976554 45788876
Q ss_pred HHHHHHHHHHHHHHHHHHhcccccCCCccccCChhhHHHHHHHHHHHHHcCceeecCcccccCCCCCcccCccccccccC
Q 003578 170 VWEWKEKYGGTITSQIKRLGASCDWTRERFTLDEQLSRAVVEAFIRLHEKGLIYQGSYMVNWSPNLQTAVSDLEVEYSEE 249 (809)
Q Consensus 170 ~~~~~~~~~~~~~~~l~~lgi~~Dw~~~~~T~d~~~~~~v~~~f~~L~~~Gliy~~~~~v~w~p~~~t~lsd~Ev~~~~~ 249 (809)
+++++|++.+++++++||+++|+ .+.|++++|.+.++++|.+|+++|+||+++++|+|||.|+++|++.+|
T Consensus 68 --e~~~~~~~~~~~~~~~l~i~~d~--f~rtt~~~h~~~v~~~~~~L~~~G~iy~~~~~~~y~~~~~~~l~~~~v----- 138 (673)
T PRK00133 68 --ELIARYHAEHKRDFAGFGISFDN--YGSTHSEENRELAQEIYLKLKENGYIYEKTIEQLYDPEKGMFLPDRFV----- 138 (673)
T ss_pred --HHHHHHHHHHHHHHHHhCCCCCC--CccCCcHHHHHHHHHHHHHHHHCCCEEEeeeEEEEeCCCCCCccchhe-----
Confidence 45688999999999999999983 233889999999999999999999999999999999999999999433
Q ss_pred CCceEEEEEEecCCCeeEEEEecCCccccCCcEEEECCCCchhhhcccCeeecCCCCCCeeeEEecCCccccCCCCceee
Q 003578 250 PGTLYYIKYRVAGRSDFLTIATTRPETLFGDVALAVNPQDEHYSQFIGMMAIVPMTYGRHVPIISDKYVDKEFGTGVLKI 329 (809)
Q Consensus 250 ~~~~~~~~f~~~~~~~~l~v~Tt~petl~~~~av~v~p~~~~y~~l~g~~~~~P~~~~~~vpi~~~~~V~~~~GTG~v~~ 329 (809)
. |+
T Consensus 139 ---------------------------------------------------------------------~---g~----- 141 (673)
T PRK00133 139 ---------------------------------------------------------------------K---GT----- 141 (673)
T ss_pred ---------------------------------------------------------------------e---cc-----
Confidence 1 33
Q ss_pred cCCCChhhHHHHHHhCCCceeecCCCCcccccccccCCCCHHHHHHHHHHHHHHCCCeeeeecccccCcccccCCCeeEE
Q 003578 330 SPGHDHNDYLLARKLGLPILNVMNKDGTLNEVAGLFRGLDRFEARKKLWSDLEETGLAVKKEPHTLRVPRSQRGGEVIEP 409 (809)
Q Consensus 330 ~P~h~~~D~~~~~~~~l~~~~~~~~~G~~~~~~g~~~G~~~~~a~~~i~~~L~~~g~~~~~~~~~~~~p~c~r~~~~i~~ 409 (809)
||.|+.. |.+|..|++||.+ .++.++..|+|.+||+++++
T Consensus 142 cp~C~~~----------------d~~g~~ce~cg~~------------------------~~~~~l~~~~~~~~g~~~e~ 181 (673)
T PRK00133 142 CPKCGAE----------------DQYGDNCEVCGAT------------------------YSPTELINPKSAISGATPVL 181 (673)
T ss_pred cCCCCCc----------------ccCCchhhhcccc------------------------CChHhhcCCccccCCCcceE
Confidence 5655433 4689999999975 34556678999999999999
Q ss_pred eeccceeeeccHHHHHHHHHHhcCCceEecchhHHHHHHHHh-cCCceeeeccccc-cceeeEEEEcCCcccEEEcCChh
Q 003578 410 LVSKQWFVTMEPLAEKALHAVEKGELTIMPERFEKIYNHWLS-NIKDWCISRQLWW-GHRIPVWYIVGKEEEYIVARNAD 487 (809)
Q Consensus 410 ~~~~qwfl~~~~~~~~~~~~~~~~~~~~~P~~~~~~~~~~l~-~l~Dw~ISRq~~W-G~piP~~~~~~~~~~~~~~~~~~ 487 (809)
+.++||||+++++++++++++++ +..| |+..++.+.+||+ +|+|||||||+.| |+|+| + +
T Consensus 182 ~~~~~~f~~l~~~~~~l~~~~~~-~~~~-~~~~~~~~~~~l~~~l~d~~ISR~~~W~GipvP-----~--~--------- 243 (673)
T PRK00133 182 KESEHFFFKLPRFEEFLKEWITR-SGEL-QPNVANKMKEWLEEGLQDWDISRDAPYFGFEIP-----G--A--------- 243 (673)
T ss_pred EecceEEEEHHHHHHHHHHHHhc-CCCC-CHHHHHHHHHHHhCCCcccceeeeCCccceECC-----C--C---------
Confidence 99999999999999999999965 3455 8899999999995 7999999999999 99999 1 1
Q ss_pred HHHHHHhhhcCCCccccccCCccceeecccCccceec-CCCCC-ChhhhhhcCCCc-----EEEeeehhHHh----HHHH
Q 003578 488 EALEKAHQKYGKNVEIYQDPDVLDTWFSSALWPFSTL-GWPDV-SADDFKKFYPTT-----MLETGHDILFF----WVAR 556 (809)
Q Consensus 488 ~~~~~~~~~~~~~~~~~~~~dvld~Wfds~~~~~~~~-~~~~~-~~~~~~~~~p~d-----~~~~G~Di~~~----w~~~ 556 (809)
+..|+|||||+.++|++.. +|+.. +.+.|+.|||.+ +|++|+||++| |+++
T Consensus 244 ------------------~~~~iyVW~dal~~Yl~~~~~~~~~~~~~~~~~~w~~~~~~~~v~~iGkDi~~fH~i~wpa~ 305 (673)
T PRK00133 244 ------------------PGKVFYVWLDAPIGYISSTKNLCDKRGGLDWDEYWKKDSDTELYHFIGKDIIYFHTLFWPAM 305 (673)
T ss_pred ------------------CCeEEEEcccchhhhhHHHhhhcccccchhHHHhcCCCCCceEEEEEeecchhHHHHHHHHH
Confidence 3469999999999999876 57654 335699999433 89999999984 7777
Q ss_pred HHHHHHHhcCCCCceeEEEeeeEEccCCCcccccccCccChhhHHHhhCCchHHHHHhhCCC-C-CcccccHHHHHH--H
Q 003578 557 MVMMGIEFTGSVPFSHVYLHGLIRDSQGRKMSKTLGNVIDPIDTIKEFGADALRFTISLGTA-G-QDLSLSIERLTA--N 632 (809)
Q Consensus 557 ~~~~~~~l~~~~Pf~~v~~hg~vld~~G~KMSKS~GN~I~p~dli~~ygaD~lR~~ll~~~~-~-~d~~fs~~~l~~--~ 632 (809)
+++.++ .+| ++|++|||+++ +|+|||||+||+|+|.|++++||+|++||||++..+ + +|.+|+++.+.. +
T Consensus 306 l~a~g~----~lP-~~v~~hg~v~~-~G~KMSKS~GNvV~p~dlie~ygaDalR~~ll~~~~~~~~D~~Fs~~~~~~~~n 379 (673)
T PRK00133 306 LEGAGY----RLP-TNVFAHGFLTV-EGAKMSKSRGTFIWARTYLDHLDPDYLRYYLAAKLPETIDDLDFNWEDFQQRVN 379 (673)
T ss_pred HHhCCC----CCC-CEEeeeccEEe-cCCcccccCCcccCHHHHHHHcCchHHHHHHHhcCCCCCCCCCCCHHHHHHHHH
Confidence 665332 345 99999999986 999999999999999999999999999999998888 8 999999999865 7
Q ss_pred HHHHHHHHHHHHHHHHhCCCCCchhhHHHHhhhccchhhhhcCCCchhHHHHHHHHHHHHHHHHHhhcCChHHHHHHHHH
Q 003578 633 KAFTNKLWNAGKFILQNLPSQNDISRWEILLAYKFDEEECLCKAPLPECWVVSKLHMLIDTVTASYDKYFFGDVGRETYD 712 (809)
Q Consensus 633 ~~~~~kl~N~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~~d~~il~~l~~~~~~v~~a~e~~~f~~a~~~i~~ 712 (809)
++++++++|+++++...+..... ... .....|+|++++++++++.+.++|++|+|+.|++.+++
T Consensus 380 ~~l~~~l~Nl~~R~~~~~~k~~~-------------~~~---~~~~~d~~ll~~l~~~~~~v~~a~e~~~~~~a~~~l~~ 443 (673)
T PRK00133 380 SELVGKVVNFASRTAGFINKRFD-------------GKL---PDALADPELLEEFEAAAEKIAEAYEAREFRKALREIMA 443 (673)
T ss_pred HHHHHHHHHHHHHHHHHHHHhcC-------------CCC---CCCcccHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHH
Confidence 88999999998877654321000 000 12346899999999999999999999999999999999
Q ss_pred HHHHhhHHHHHHHhhhhhhcCCCcHHHHHHHHHHHHHHHHHHHHhccchhHHHHHHHHHhccC
Q 003578 713 FFWSDFADWYIEASKARLYRSEYDSDAIIAQAVLLYIFENILKLLHPFMPFVTEELWQSLRKR 775 (809)
Q Consensus 713 f~~~~~~n~Yi~~~k~~l~~~~~~~~~~~~~~~l~~vl~~l~~lL~P~~P~~aeeiw~~L~~~ 775 (809)
|+ +++|+|++..|||...+++.+....++.++..+++.+++||+|||||+||+||++|+..
T Consensus 444 l~--~~~N~yi~~~kpw~~~~~~~~~~~~~l~~~~~~l~~l~~lL~Pf~P~~ae~i~~~Lg~~ 504 (673)
T PRK00133 444 LA--DFANKYVDDNEPWKLAKQDGERLQAVCSVGLNLFRALAIYLKPVLPELAERAEAFLNLE 504 (673)
T ss_pred HH--HHHHHHHHhcCChhhhcCCHHHHHHHHHHHHHHHHHHHHHhhChhchHHHHHHHHhCCC
Confidence 97 69999999999997665444455667778888999999999999999999999999863
No 35
>PRK12267 methionyl-tRNA synthetase; Reviewed
Probab=100.00 E-value=5.5e-86 Score=781.40 Aligned_cols=468 Identities=24% Similarity=0.360 Sum_probs=400.1
Q ss_pred CCCEEEeCCCCCCCCCCcchhhHHHHHHHHHHHHHHHCCCcccccCCCCCCCCchHHHHHHHHHHcCCCccccCHHHHHH
Q 003578 89 SDPFVISMPPPNVTGSLHMGHAMFVTLEDIMVRYHRMKGRPTLWLPGTDHAGIATQLVVEKMLAAEGIKRVELSRDEFTK 168 (809)
Q Consensus 89 ~~~f~i~~~pPy~nG~lHiGH~~~~~~~Di~~Ry~rm~G~~V~~~~G~D~~Gl~~~~~~e~~~~~~g~~~~~~~~~~f~~ 168 (809)
+++|+||+|+|||||.|||||+++++++|+++||+||+|++|+|++|+|+||++|+ ..|+++|++++
T Consensus 3 ~~~~~it~~~py~ng~~HiGH~~~~~~aDv~~R~~r~~G~~v~~~~g~D~~g~~i~----~~A~~~g~~~~--------- 69 (648)
T PRK12267 3 KKTFYITTPIYYPNGKPHIGHAYTTIAADALARYKRLQGYDVFFLTGTDEHGQKIQ----QAAEKAGKTPQ--------- 69 (648)
T ss_pred CCCEEEeeCCCCCCCCcccccchHHHHHHHHHHHHHhcCCceEeecCCCCcchHHH----HHHHHcCCCHH---------
Confidence 35899999999999999999999999999999999999999999999999999954 45567898876
Q ss_pred HHHHHHHHHHHHHHHHHHHhccccc-CCCccccCChhhHHHHHHHHHHHHHcCceeecCcccccCCCCCcccCccccccc
Q 003578 169 RVWEWKEKYGGTITSQIKRLGASCD-WTRERFTLDEQLSRAVVEAFIRLHEKGLIYQGSYMVNWSPNLQTAVSDLEVEYS 247 (809)
Q Consensus 169 ~~~~~~~~~~~~~~~~l~~lgi~~D-w~~~~~T~d~~~~~~v~~~f~~L~~~Gliy~~~~~v~w~p~~~t~lsd~Ev~~~ 247 (809)
++++++.+.|+++|++|||++| |.| |+++.|.+.|+++|.+|+++|+||++++.++||+.|+++|++.++.
T Consensus 70 ---e~~d~~~~~fk~~l~~lgI~~D~f~r---Tt~~~h~~~v~~~~~~L~~kG~IY~~~~~~~yc~~~~~~l~~~~l~-- 141 (648)
T PRK12267 70 ---EYVDEISAGFKELWKKLDISYDKFIR---TTDERHKKVVQKIFEKLYEQGDIYKGEYEGWYCVSCETFFTESQLV-- 141 (648)
T ss_pred ---HHHHHHHHHHHHHHHHcCCCCCCCee---CCCHHHHHHHHHHHHHHHHCCCEEEeeEEEeecCCCCccCChHHhc--
Confidence 4568899999999999999999 555 8999999999999999999999999999999999999998884320
Q ss_pred cCCCceEEEEEEecCCCeeEEEEecCCccccCCcEEEECCCCchhhhcccCeeecCCCCCCeeeEEecCCccccCCCCce
Q 003578 248 EEPGTLYYIKYRVAGRSDFLTIATTRPETLFGDVALAVNPQDEHYSQFIGMMAIVPMTYGRHVPIISDKYVDKEFGTGVL 327 (809)
Q Consensus 248 ~~~~~~~~~~f~~~~~~~~l~v~Tt~petl~~~~av~v~p~~~~y~~l~g~~~~~P~~~~~~vpi~~~~~V~~~~GTG~v 327 (809)
T Consensus 142 -------------------------------------------------------------------------------- 141 (648)
T PRK12267 142 -------------------------------------------------------------------------------- 141 (648)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred eecCCCChhhHHHHHHhCCCceeecCCCCcccccccccCCCCHHHHHHHHHHHHHHCCCeeeeecccccCcccccCCCee
Q 003578 328 KISPGHDHNDYLLARKLGLPILNVMNKDGTLNEVAGLFRGLDRFEARKKLWSDLEETGLAVKKEPHTLRVPRSQRGGEVI 407 (809)
Q Consensus 328 ~~~P~h~~~D~~~~~~~~l~~~~~~~~~G~~~~~~g~~~G~~~~~a~~~i~~~L~~~g~~~~~~~~~~~~p~c~r~~~~i 407 (809)
..|+|++||.++
T Consensus 142 --------------------------------------------------------------------~~~~c~~cg~~~ 153 (648)
T PRK12267 142 --------------------------------------------------------------------DGGKCPDCGREV 153 (648)
T ss_pred --------------------------------------------------------------------cCCcCCCCCCcC
Confidence 025699999999
Q ss_pred EEeeccceeeeccHHHHHHHHHHhcCCceEecchhHHHHH-HHHhc-CCceeeeccc-cccceeeEEEEcCCcccEEEcC
Q 003578 408 EPLVSKQWFVTMEPLAEKALHAVEKGELTIMPERFEKIYN-HWLSN-IKDWCISRQL-WWGHRIPVWYIVGKEEEYIVAR 484 (809)
Q Consensus 408 ~~~~~~qwfl~~~~~~~~~~~~~~~~~~~~~P~~~~~~~~-~~l~~-l~Dw~ISRq~-~WG~piP~~~~~~~~~~~~~~~ 484 (809)
+++.++||||+++++++++++++++++..+.|+..++.+. +||++ ++|||||||+ .||+|||. +
T Consensus 154 e~~~~~~~f~~l~~~~~~l~~~~~~~~~~~~p~~~~~~~~~~~l~~~l~D~~ISR~~~~WGipvP~-------~------ 220 (648)
T PRK12267 154 ELVKEESYFFRMSKYQDRLLEYYEENPDFIQPESRKNEMINNFIKPGLEDLSISRTSFDWGIPVPF-------D------ 220 (648)
T ss_pred eEEecceEEEEcHHHHHHHHHHHhhCCcccCCHHHHHHHHHHHhhCCCCCcccCCCCCCcceECCC-------C------
Confidence 9999999999999999999999987655678999999888 99975 9999999996 69999993 1
Q ss_pred ChhHHHHHHhhhcCCCccccccCCccceeecccCccceecCCCCCChhhhhhcCCCcEEEeeehhHHhHHHHHHHHHHHh
Q 003578 485 NADEALEKAHQKYGKNVEIYQDPDVLDTWFSSALWPFSTLGWPDVSADDFKKFYPTTMLETGHDILFFWVARMVMMGIEF 564 (809)
Q Consensus 485 ~~~~~~~~~~~~~~~~~~~~~~~dvld~Wfds~~~~~~~~~~~~~~~~~~~~~~p~d~~~~G~Di~~~w~~~~~~~~~~l 564 (809)
+++|+||||||+++|++.++|+..+..+|++|||.|+|++|+||++||....-++-.+
T Consensus 221 ---------------------~~~v~yVWfDA~~~y~s~~~~~~~~~~~~~~~wp~~~~~~GkDii~fH~i~wpa~l~~- 278 (648)
T PRK12267 221 ---------------------PKHVVYVWIDALLNYITALGYGSDDDELFKKFWPADVHLVGKDILRFHAIYWPIMLMA- 278 (648)
T ss_pred ---------------------CCCEEEEcccchHHHHHHcCCCCCCchHHHhhcccceEEEeeeecchhHHHHHHHHHh-
Confidence 3479999999999999999998655567999999999999999998644332121111
Q ss_pred cCCCCceeEEEeeeEEccCCCcccccccCccChhhHHHhhCCchHHHHHhhCCC-CCcccccHHHHHH--HHHHHHHHHH
Q 003578 565 TGSVPFSHVYLHGLIRDSQGRKMSKTLGNVIDPIDTIKEFGADALRFTISLGTA-GQDLSLSIERLTA--NKAFTNKLWN 641 (809)
Q Consensus 565 ~~~~Pf~~v~~hg~vld~~G~KMSKS~GN~I~p~dli~~ygaD~lR~~ll~~~~-~~d~~fs~~~l~~--~~~~~~kl~N 641 (809)
.+..|++++++|||++ .+|+|||||+||+|+|.+++++||+|++||||++..+ ++|.+|+++.+.. +++++++|+|
T Consensus 279 ~~~~~p~~v~~hg~l~-~eg~KMSKS~GN~i~p~d~l~~ygaD~lR~~L~~~~~~~~D~~fs~~~~~~~~n~~l~~~lgN 357 (648)
T PRK12267 279 LGLPLPKKVFAHGWWL-MKDGKMSKSKGNVVDPEELVDRYGLDALRYYLLREVPFGSDGDFSPEALVERINSDLANDLGN 357 (648)
T ss_pred CCCCCCcEEEecceEE-ECCceecccCCcccCHHHHHHHcCCcHHHHHHHhcCCCCCCCCCCHHHHHHHHHHHHHHHHhH
Confidence 1344779999999998 6899999999999999999999999999999998777 9999999999976 7889999999
Q ss_pred HHHHHHHhCCCCCchhhHHHHhhhccchhhhhcCCCchhHHHHHHHHHHHHHHHHHhhcCChHHHHHHHHHHHHHhhHHH
Q 003578 642 AGKFILQNLPSQNDISRWEILLAYKFDEEECLCKAPLPECWVVSKLHMLIDTVTASYDKYFFGDVGRETYDFFWSDFADW 721 (809)
Q Consensus 642 ~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~~d~~il~~l~~~~~~v~~a~e~~~f~~a~~~i~~f~~~~~~n~ 721 (809)
++.++...+..... . ..+....++..|+|++++++++++++.++|++|+|++|++.+++|+ ..+|+
T Consensus 358 l~~R~~~~~~~~~~---------~---~~p~~~~~~~~D~~ll~~l~~~~~~v~~~~e~~~~~~al~~i~~~~--~~~N~ 423 (648)
T PRK12267 358 LLNRTVAMINKYFD---------G---EIPAPGNVTEFDEELIALAEETLKNYEELMEELQFSRALEEVWKLI--SRANK 423 (648)
T ss_pred HHHHHHHHHHHhcC---------C---cCCCCCCCchhhHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHH--HHHHH
Confidence 98877654321100 0 0000123456799999999999999999999999999999999997 58999
Q ss_pred HHHHhhhhhhcCC--CcHHHHHHHHHHHHHHHHHHHHhccchhHHHHHHHHHhccC
Q 003578 722 YIEASKARLYRSE--YDSDAIIAQAVLLYIFENILKLLHPFMPFVTEELWQSLRKR 775 (809)
Q Consensus 722 Yi~~~k~~l~~~~--~~~~~~~~~~~l~~vl~~l~~lL~P~~P~~aeeiw~~L~~~ 775 (809)
|++..+||...++ +......+..+++.+++.+++||+|||||+||+||++|+..
T Consensus 424 Yi~~~kpW~~~~~~~~~~~~~~~l~~~~~~l~~~~~lL~P~~P~~ae~i~~~Lg~~ 479 (648)
T PRK12267 424 YIDETAPWVLAKDEGKKERLATVMYHLAESLRKVAVLLSPFMPETSKKIFEQLGLE 479 (648)
T ss_pred HHHhCCChhhhcCcccHHHHHHHHHHHHHHHHHHHHHHhCccchHHHHHHHHcCCC
Confidence 9999999976543 22244566778888999999999999999999999999863
No 36
>PLN02224 methionine-tRNA ligase
Probab=100.00 E-value=4e-83 Score=737.64 Aligned_cols=465 Identities=21% Similarity=0.326 Sum_probs=390.3
Q ss_pred CCCEEEeCCCCCCCCCCcchhhHHHHHHHHHHHHHHHCCCcccccCCCCCCCCchHHHHHHHHHHcCCCccccCHHHHHH
Q 003578 89 SDPFVISMPPPNVTGSLHMGHAMFVTLEDIMVRYHRMKGRPTLWLPGTDHAGIATQLVVEKMLAAEGIKRVELSRDEFTK 168 (809)
Q Consensus 89 ~~~f~i~~~pPy~nG~lHiGH~~~~~~~Di~~Ry~rm~G~~V~~~~G~D~~Gl~~~~~~e~~~~~~g~~~~~~~~~~f~~ 168 (809)
+++|+|++|||||||.|||||+++++++|+++||+||+|++|+|++|||+||++|+ +.++++|+++.+
T Consensus 68 ~~~~~ittp~pY~NG~~HiGHa~~~~~aDviaR~~r~~G~~V~fv~G~DehG~kI~----~~A~~~g~~p~e-------- 135 (616)
T PLN02224 68 ADTFVLTTPLYYVNAPPHMGSAYTTIAADSIARFQRLLGKKVIFITGTDEHGEKIA----TSAAANGRNPPE-------- 135 (616)
T ss_pred CCeEEEeCCCCCCCCCCchhccHHHHHHHHHHHHHHhcCCceEEecCcCCcchHHH----HHHHHcCCChHH--------
Confidence 67899999999999999999999999999999999999999999999999999965 445677888753
Q ss_pred HHHHHHHHHHHHHHHHHHHhcccccCCCccccCChhhHHHHHHHHHHHHHcCceeecCcccccCCCCCcccCcccccccc
Q 003578 169 RVWEWKEKYGGTITSQIKRLGASCDWTRERFTLDEQLSRAVVEAFIRLHEKGLIYQGSYMVNWSPNLQTAVSDLEVEYSE 248 (809)
Q Consensus 169 ~~~~~~~~~~~~~~~~l~~lgi~~Dw~~~~~T~d~~~~~~v~~~f~~L~~~Gliy~~~~~v~w~p~~~t~lsd~Ev~~~~ 248 (809)
+++++++.+++++++|||++| +.+.|++|.|.+.||++|.+|+++|+||+++++++|||.|++.+.+.|+.
T Consensus 136 ----~~~~~~~~~~~~~~~l~I~~D--~f~rTt~~~h~~~vq~~f~~L~~~G~Iy~~~~~~~yc~~ce~f~~~~~l~--- 206 (616)
T PLN02224 136 ----HCDIISQSYRTLWKDLDIAYD--KFIRTTDPKHEAIVKEFYARVFANGDIYRADYEGLYCVNCEEYKDEKELL--- 206 (616)
T ss_pred ----HHHHHHHHHHHHHHHcCCCCC--cCeeCCCHHHHHHHHHHHHHHHHCCCEEEeeeeeeecCCCCCCCCHHHHc---
Confidence 456778889999999999777 44559999999999999999999999999999999999998877664330
Q ss_pred CCCceEEEEEEecCCCeeEEEEecCCccccCCcEEEECCCCchhhhcccCeeecCCCCCCeeeEEecCCccccCCCCcee
Q 003578 249 EPGTLYYIKYRVAGRSDFLTIATTRPETLFGDVALAVNPQDEHYSQFIGMMAIVPMTYGRHVPIISDKYVDKEFGTGVLK 328 (809)
Q Consensus 249 ~~~~~~~~~f~~~~~~~~l~v~Tt~petl~~~~av~v~p~~~~y~~l~g~~~~~P~~~~~~vpi~~~~~V~~~~GTG~v~ 328 (809)
T Consensus 207 -------------------------------------------------------------------------------- 206 (616)
T PLN02224 207 -------------------------------------------------------------------------------- 206 (616)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred ecCCCChhhHHHHHHhCCCceeecCCCCcccccccccCCCCHHHHHHHHHHHHHHCCCeeeeecccccCcccccCCCeeE
Q 003578 329 ISPGHDHNDYLLARKLGLPILNVMNKDGTLNEVAGLFRGLDRFEARKKLWSDLEETGLAVKKEPHTLRVPRSQRGGEVIE 408 (809)
Q Consensus 329 ~~P~h~~~D~~~~~~~~l~~~~~~~~~G~~~~~~g~~~G~~~~~a~~~i~~~L~~~g~~~~~~~~~~~~p~c~r~~~~i~ 408 (809)
..+.|..||.+++
T Consensus 207 -------------------------------------------------------------------~~~~~~~~~~~~~ 219 (616)
T PLN02224 207 -------------------------------------------------------------------ENNCCPVHQMPCV 219 (616)
T ss_pred -------------------------------------------------------------------CCCCCCCCCCcce
Confidence 0123777899999
Q ss_pred EeeccceeeeccHHHHHHHHHHhcCCceEecchhHHHHHHHHh-cCCceeeeccc-cccceeeEEEEcCCcccEEEcCCh
Q 003578 409 PLVSKQWFVTMEPLAEKALHAVEKGELTIMPERFEKIYNHWLS-NIKDWCISRQL-WWGHRIPVWYIVGKEEEYIVARNA 486 (809)
Q Consensus 409 ~~~~~qwfl~~~~~~~~~~~~~~~~~~~~~P~~~~~~~~~~l~-~l~Dw~ISRq~-~WG~piP~~~~~~~~~~~~~~~~~ 486 (809)
.+.+++|||+++++++.++++++++.-.+.|+..++.+.+||+ +|+||||||++ .||+|+|. +
T Consensus 220 ~~~e~~~ff~Ls~~~~~L~~~~~~~~~~~~p~~~~~~~~~~l~~gL~d~~ISR~~~~WGIpvP~-------~-------- 284 (616)
T PLN02224 220 ARKEDNYFFALSKYQKPLEDILAQNPRFVQPSYRLNEVQSWIKSGLRDFSISRALVDWGIPVPD-------D-------- 284 (616)
T ss_pred EEecceEEEEhHHHHHHHHHHHHhCCCccCCHHHHHHHHHHHhcCCCCccccCCCCCCceECCC-------C--------
Confidence 9999999999999999999999876555779989999999996 69999999986 79999992 1
Q ss_pred hHHHHHHhhhcCCCccccccCCccceeecccCccceecCCCCCCh---hhhhhcCCCcEEEeeehhHHh----HHHHHHH
Q 003578 487 DEALEKAHQKYGKNVEIYQDPDVLDTWFSSALWPFSTLGWPDVSA---DDFKKFYPTTMLETGHDILFF----WVARMVM 559 (809)
Q Consensus 487 ~~~~~~~~~~~~~~~~~~~~~dvld~Wfds~~~~~~~~~~~~~~~---~~~~~~~p~d~~~~G~Di~~~----w~~~~~~ 559 (809)
+.+|+|||||+.++|++.+++..... ..+..|||.|+|++|+||++| |++++++
T Consensus 285 -------------------~~~viYVWfDAl~~Yls~~~~~~~~~~~~~~~~~~w~~~v~~iGKDii~fH~i~wpa~l~~ 345 (616)
T PLN02224 285 -------------------DKQTIYVWFDALLGYISALTEDNKQQNLETAVSFGWPASLHLIGKDILRFHAVYWPAMLMS 345 (616)
T ss_pred -------------------CCcEEEEehhhHHHHHHHhcccccccccchhhccCCCcceEEEeecccccHHHHHHHHHHH
Confidence 35799999999999999888754321 125668999999999999986 7765543
Q ss_pred HHHHhcCCCCceeEEEeeeEEccCCCcccccccCccChhhHHHhhCCchHHHHHhhCCC-CCcccccHHHHHH--HHHHH
Q 003578 560 MGIEFTGSVPFSHVYLHGLIRDSQGRKMSKTLGNVIDPIDTIKEFGADALRFTISLGTA-GQDLSLSIERLTA--NKAFT 636 (809)
Q Consensus 560 ~~~~l~~~~Pf~~v~~hg~vld~~G~KMSKS~GN~I~p~dli~~ygaD~lR~~ll~~~~-~~d~~fs~~~l~~--~~~~~ 636 (809)
.+ -.+| +++++||++ +.+|+|||||+||+|+|.+++++||+|++||||++..+ .+|.+|+++.+.. +++++
T Consensus 346 ~g----~~~P-~~i~~~g~l-~~eG~KMSKS~GN~i~p~e~l~~ygaD~~R~yLl~~~p~~~d~~fs~~~~~~~~NseLa 419 (616)
T PLN02224 346 AG----LELP-KMVFGHGFL-TKDGMKMGKSLGNTLEPFELVQKFGPDAVRYFFLREVEFGNDGDYSEDRFIKIVNAHLA 419 (616)
T ss_pred CC----CCCC-cEEEecccE-ecCCccccccCCccCCHHHHHHHcCcHHHHHHHHhcCCCcCCCCCCHHHHHHHHHHHHH
Confidence 32 2445 999999997 59999999999999999999999999999999999888 9999999999865 78899
Q ss_pred HHHHHHHHHHHHhCCCCCchhhHHHHhhhccchhhhhcCCCchhHHHHHHHHHHHHHHHHHhhcCChHHHHHHHHHHHHH
Q 003578 637 NKLWNAGKFILQNLPSQNDISRWEILLAYKFDEEECLCKAPLPECWVVSKLHMLIDTVTASYDKYFFGDVGRETYDFFWS 716 (809)
Q Consensus 637 ~kl~N~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~~d~~il~~l~~~~~~v~~a~e~~~f~~a~~~i~~f~~~ 716 (809)
+.++|+++++......... .. ..........|.+++++++++++++.++|++++|++|++.+++++
T Consensus 420 n~lgNll~R~l~~~~k~~~---------~~---~~~~~~~~~~d~~l~~~l~~li~~v~~~me~~~~~~Al~~i~el~-- 485 (616)
T PLN02224 420 NTIGNLLNRTLGLLKKNCE---------ST---LVEDSTVAAEGVPLKDTVEKLVEKAQTNYENLSLSSACEAVLEIG-- 485 (616)
T ss_pred HHHHHHHHHHHHHHHHhcC---------Cc---CCCccccccccHHHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHH--
Confidence 9999999877654321110 00 000011234578999999999999999999999999999999996
Q ss_pred hhHHHHHHHhhhhhhcCCC--c-HHHHHHHHHHHHHHHHHHHHhccchhHHHHHHHHHhccC
Q 003578 717 DFADWYIEASKARLYRSEY--D-SDAIIAQAVLLYIFENILKLLHPFMPFVTEELWQSLRKR 775 (809)
Q Consensus 717 ~~~n~Yi~~~k~~l~~~~~--~-~~~~~~~~~l~~vl~~l~~lL~P~~P~~aeeiw~~L~~~ 775 (809)
..+|+|++..+||....++ . +...+...+++++++.+++||+|||||+||+||++|+..
T Consensus 486 ~~~N~Yi~~~~PW~l~k~~~~~~~~~~~~l~~l~e~lr~~a~LLaPf~P~~Ae~I~~~Lg~~ 547 (616)
T PLN02224 486 NAGNTYMDQRAPWFLFKQGGVSAEEAAKDLVIILEVMRVIAVALSPIAPCLSLRIYSQLGYS 547 (616)
T ss_pred HHHHHHHHhCCchhhhccccccHHHHHHHHHHHHHHHHHHHHHHhccccHHHHHHHHHhCCC
Confidence 7899999999999654322 1 233556678899999999999999999999999999854
No 37
>PRK11893 methionyl-tRNA synthetase; Reviewed
Probab=100.00 E-value=3.2e-82 Score=735.03 Aligned_cols=467 Identities=26% Similarity=0.392 Sum_probs=404.2
Q ss_pred CCEEEeCCCCCCCCCCcchhhHHHHHHHHHHHHHHHCCCcccccCCCCCCCCchHHHHHHHHHHcCCCccccCHHHHHHH
Q 003578 90 DPFVISMPPPNVTGSLHMGHAMFVTLEDIMVRYHRMKGRPTLWLPGTDHAGIATQLVVEKMLAAEGIKRVELSRDEFTKR 169 (809)
Q Consensus 90 ~~f~i~~~pPy~nG~lHiGH~~~~~~~Di~~Ry~rm~G~~V~~~~G~D~~Gl~~~~~~e~~~~~~g~~~~~~~~~~f~~~ 169 (809)
++|+|++|||||||.+||||+++++++|+++||+||+|++|.|++|+|+||.+|+ +.+++.|+++.
T Consensus 1 ~~~~i~~~~P~~~g~~HiGh~~~~~~~Dv~~R~~r~~G~~v~~v~g~dd~g~~i~----~~a~~~g~~~~---------- 66 (511)
T PRK11893 1 KKFYITTPIYYPNGKPHIGHAYTTLAADVLARFKRLRGYDVFFLTGTDEHGQKIQ----RKAEEAGISPQ---------- 66 (511)
T ss_pred CCEEEecCCCCCCCCcccchhHHHHHHHHHHHHHHhcCCcEEecCCCCCCChHHH----HHHHHcCCCHH----------
Confidence 4799999999999999999999999999999999999999999999999999854 45677898875
Q ss_pred HHHHHHHHHHHHHHHHHHhccccc-CCCccccCChhhHHHHHHHHHHHHHcCceeecCcccccCCCCCcccCcccccccc
Q 003578 170 VWEWKEKYGGTITSQIKRLGASCD-WTRERFTLDEQLSRAVVEAFIRLHEKGLIYQGSYMVNWSPNLQTAVSDLEVEYSE 248 (809)
Q Consensus 170 ~~~~~~~~~~~~~~~l~~lgi~~D-w~~~~~T~d~~~~~~v~~~f~~L~~~Gliy~~~~~v~w~p~~~t~lsd~Ev~~~~ 248 (809)
++++++++.|+++|++|||.+| |.+ |+++.|.+.|+++|.+|+++|+||++.++|+||+.|+|+|++.|+.
T Consensus 67 --~~~~~~~~~~~~~l~~l~I~~D~~~~---t~~~~~~~~v~~~~~~L~~~G~iY~~~~~~~~~~~~~~~l~~~~l~--- 138 (511)
T PRK11893 67 --ELADRNSAAFKRLWEALNISYDDFIR---TTDPRHKEAVQEIFQRLLANGDIYLGKYEGWYCVRCEEFYTESELI--- 138 (511)
T ss_pred --HHHHHHHHHHHHHHHHhCCCcCCcee---CCCHHHHHHHHHHHHHHHHCCCEEEeeeeeeccccccccCCHHHhc---
Confidence 4567899999999999999988 544 8999999999999999999999999999999999999999985531
Q ss_pred CCCceEEEEEEecCCCeeEEEEecCCccccCCcEEEECCCCchhhhcccCeeecCCCCCCeeeEEecCCccccCCCCcee
Q 003578 249 EPGTLYYIKYRVAGRSDFLTIATTRPETLFGDVALAVNPQDEHYSQFIGMMAIVPMTYGRHVPIISDKYVDKEFGTGVLK 328 (809)
Q Consensus 249 ~~~~~~~~~f~~~~~~~~l~v~Tt~petl~~~~av~v~p~~~~y~~l~g~~~~~P~~~~~~vpi~~~~~V~~~~GTG~v~ 328 (809)
T Consensus 139 -------------------------------------------------------------------------------- 138 (511)
T PRK11893 139 -------------------------------------------------------------------------------- 138 (511)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred ecCCCChhhHHHHHHhCCCceeecCCCCcccccccccCCCCHHHHHHHHHHHHHHCCCeeeeecccccCcccccCCCeeE
Q 003578 329 ISPGHDHNDYLLARKLGLPILNVMNKDGTLNEVAGLFRGLDRFEARKKLWSDLEETGLAVKKEPHTLRVPRSQRGGEVIE 408 (809)
Q Consensus 329 ~~P~h~~~D~~~~~~~~l~~~~~~~~~G~~~~~~g~~~G~~~~~a~~~i~~~L~~~g~~~~~~~~~~~~p~c~r~~~~i~ 408 (809)
++ .|+|+|||++++
T Consensus 139 --------------------------------------------------------------~~----~p~~~~~~~~~~ 152 (511)
T PRK11893 139 --------------------------------------------------------------ED----GYRCPPTGAPVE 152 (511)
T ss_pred --------------------------------------------------------------CC----CCCCCCCCCcce
Confidence 00 178999999999
Q ss_pred EeeccceeeeccHHHHHHHHHHhcCCceEecchhHHHHHHHHh-cCCceeeec-cccccceeeEEEEcCCcccEEEcCCh
Q 003578 409 PLVSKQWFVTMEPLAEKALHAVEKGELTIMPERFEKIYNHWLS-NIKDWCISR-QLWWGHRIPVWYIVGKEEEYIVARNA 486 (809)
Q Consensus 409 ~~~~~qwfl~~~~~~~~~~~~~~~~~~~~~P~~~~~~~~~~l~-~l~Dw~ISR-q~~WG~piP~~~~~~~~~~~~~~~~~ 486 (809)
++.++|||++++++++++.++++++...+.|+..++.+.+|++ +++|||||| |++||+|+|. +
T Consensus 153 ~~~~~~~f~~l~~~~~~l~~~~~~~~~~~~p~~~~~~~~~~l~~~~~D~~isR~~~~WGipiP~-------~-------- 217 (511)
T PRK11893 153 WVEEESYFFRLSKYQDKLLELYEANPDFIQPASRRNEVISFVKSGLKDLSISRTNFDWGIPVPG-------D-------- 217 (511)
T ss_pred EEecCeEEEEcHHHHHHHHHHHHhCCCccCCHHHHHHHHHHHHCCCCCcccCCCCCCCCccCCC-------C--------
Confidence 9999999999999999999999865445679999999999997 699999999 9999999993 1
Q ss_pred hHHHHHHhhhcCCCccccccCCccceeecccCccceecCCCCCCh---hhhhhcCCCcEEEeeehhHHhHHHHHHHHHHH
Q 003578 487 DEALEKAHQKYGKNVEIYQDPDVLDTWFSSALWPFSTLGWPDVSA---DDFKKFYPTTMLETGHDILFFWVARMVMMGIE 563 (809)
Q Consensus 487 ~~~~~~~~~~~~~~~~~~~~~dvld~Wfds~~~~~~~~~~~~~~~---~~~~~~~p~d~~~~G~Di~~~w~~~~~~~~~~ 563 (809)
+.+++||||||+++|++..++|.+.+ ++|++|||.|++++|+||++||.....++..+
T Consensus 218 -------------------~~~~~~vWfda~~~y~s~~~~p~~~~~~~~~~~~~~~~D~~~~G~D~~~~h~~~~~a~~~a 278 (511)
T PRK11893 218 -------------------PKHVIYVWFDALTNYLTALGYPDDEELLAELFNKYWPADVHLIGKDILRFHAVYWPAFLMA 278 (511)
T ss_pred -------------------CCceEEEEecCcHHHHhHhccccccccchhHHHhcCCCcceEecccccccchhHHHHHHHh
Confidence 34699999999999999989886432 36899999999999999999988888777776
Q ss_pred hcCCCCceeEEEeeeEEccCCCcccccccCccChhhHHHhhCCchHHHHHhhCCC-CCcccccHHHHHH--HHHHHHHHH
Q 003578 564 FTGSVPFSHVYLHGLIRDSQGRKMSKTLGNVIDPIDTIKEFGADALRFTISLGTA-GQDLSLSIERLTA--NKAFTNKLW 640 (809)
Q Consensus 564 l~~~~Pf~~v~~hg~vld~~G~KMSKS~GN~I~p~dli~~ygaD~lR~~ll~~~~-~~d~~fs~~~l~~--~~~~~~kl~ 640 (809)
+..+.| +++++|||++ .+|+|||||+||+|+|.|++++||+|++||||++.++ ++|++|+++.+.. +.++.+.++
T Consensus 279 ~~~~~p-~~~~~~g~v~-~~G~KMSKS~GN~i~~~dll~~~g~DalR~~ll~~~~~~~d~~Fs~~~~~~~~~~~l~~~l~ 356 (511)
T PRK11893 279 AGLPLP-KRVFAHGFLT-LDGEKMSKSLGNVIDPFDLVDEYGVDAVRYFLLREIPFGQDGDFSREAFINRINADLANDLG 356 (511)
T ss_pred CCCCCC-CEEEeeccEE-ECCeeecccCCcEEcHHHHHHHcCcHHHHHHHHhcCCCCcCCCCCHHHHHHHHHHHHHHHHH
Confidence 656777 9999999998 6999999999999999999999999999999999866 9999999999966 567888999
Q ss_pred HHHHHHHHhCCCC-CchhhHHHHhhhccchhhhhcCCCchhHHHHHHHHHHHHHHHHHhhcCChHHHHHHHHHHHHHhhH
Q 003578 641 NAGKFILQNLPSQ-NDISRWEILLAYKFDEEECLCKAPLPECWVVSKLHMLIDTVTASYDKYFFGDVGRETYDFFWSDFA 719 (809)
Q Consensus 641 N~~~~~~~~l~~~-~~~~~~~~~~~~~~~~~~~~~~l~~~d~~il~~l~~~~~~v~~a~e~~~f~~a~~~i~~f~~~~~~ 719 (809)
|++.++...+... .. ..+....++..|+|++++++++.+.+.++|++|+++.|++.+++|+ ..+
T Consensus 357 n~~~r~~~~~~~~~~~-------------~~~~~~~~~~~d~~l~~~l~~~~~~v~~~~~~~~~~~a~~~l~~l~--~~~ 421 (511)
T PRK11893 357 NLAQRTLSMIAKNFDG-------------KVPEPGALTEADEALLEAAAALLERVRAAMDNLAFDKALEAILALV--RAA 421 (511)
T ss_pred HHHHHHHHHHHHhcCC-------------CCCCCcccchhhHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHH--HHH
Confidence 9877655432110 00 0000112456789999999999999999999999999999999998 568
Q ss_pred HHHHHHhhhhhhcCCCcHHHHHHHHHHHHHHHHHHHHhccchhHHHHHHHHHhccC
Q 003578 720 DWYIEASKARLYRSEYDSDAIIAQAVLLYIFENILKLLHPFMPFVTEELWQSLRKR 775 (809)
Q Consensus 720 n~Yi~~~k~~l~~~~~~~~~~~~~~~l~~vl~~l~~lL~P~~P~~aeeiw~~L~~~ 775 (809)
|+|++..+||...+++....+.+..+++++++.+++||+|||||+||+||++|+..
T Consensus 422 n~y~~~~~pw~~~~~~~~~~~~~l~~~~~~l~~l~~ll~P~~P~~ae~i~~~L~~~ 477 (511)
T PRK11893 422 NKYIDEQAPWSLAKTDPERLATVLYTLLEVLRGIAVLLQPVMPELAAKILDQLGVE 477 (511)
T ss_pred HHHHhhCCChhhhcCCHHHHHHHHHHHHHHHHHHHHHHhCccchHHHHHHHHhCCC
Confidence 99999999997655444456778889999999999999999999999999999854
No 38
>KOG0437 consensus Leucyl-tRNA synthetase [Translation, ribosomal structure and biogenesis]
Probab=100.00 E-value=2.2e-77 Score=654.19 Aligned_cols=684 Identities=24% Similarity=0.380 Sum_probs=528.2
Q ss_pred hhHHHHHHHHHhcCCCCCCCC----CCCCCEEEeCCCCCCCCCCcchhhHHHHHHHHHHHHHHHCCCcccccCCCCCCCC
Q 003578 66 TSEERIYNWWESQGYFKPNFE----RGSDPFVISMPPPNVTGSLHMGHAMFVTLEDIMVRYHRMKGRPTLWLPGTDHAGI 141 (809)
Q Consensus 66 ~~E~~~~~~W~~~~~f~~~~~----~~~~~f~i~~~pPy~nG~lHiGH~~~~~~~Di~~Ry~rm~G~~V~~~~G~D~~Gl 141 (809)
++|+++|++|+++++|+.+.. +.+++|++++|.||.||.||+||+++..-.|+.+-|+||+|++|+|++|++|.|+
T Consensus 16 eiEk~~q~~W~~e~~fevda~~el~~~~~Kff~tfpyPYMNG~LHlGH~FslSK~eFa~~y~rL~Gk~vLfPfgFHCTGM 95 (1080)
T KOG0437|consen 16 EIEKKYQKKWDTEKVFEVDAPNELQKSKPKFFVTFPYPYMNGRLHLGHAFSLSKVEFASGYERLQGKNVLFPFGFHCTGM 95 (1080)
T ss_pred HHHHHHHHhhhhhhheeccCchhcccccCceeEeccccccCceeeccceeehhhhHHHHHHHHhcCceEEeecccccCCC
Confidence 899999999999999998752 3478999999999999999999999999999999999999999999999999999
Q ss_pred chHHHHHHHHHH---cCCCc------------------------------------------------cccCHHHHHH--
Q 003578 142 ATQLVVEKMLAA---EGIKR------------------------------------------------VELSRDEFTK-- 168 (809)
Q Consensus 142 ~~~~~~e~~~~~---~g~~~------------------------------------------------~~~~~~~f~~-- 168 (809)
||...+.+..++ -|.+| ..+++++..+
T Consensus 96 PI~A~AdKLkrEie~fG~ppdf~~e~eeEv~eev~~~~~~~~~k~kgKKsk~aaK~g~~kYQw~IM~slGl~deEI~~F~ 175 (1080)
T KOG0437|consen 96 PIKASADKLKREIELFGCPPDFPEEEEEEVEEEVKTEDAIEDVKFKGKKSKAAAKTGGQKYQWEIMESLGLPDEEIKKFA 175 (1080)
T ss_pred ccHHhHHHHHHHHHHhCCCCCCchhhhhhhhhcccccccccccccccchhhHHHhhcccchhHHHHHHcCCCHHHhhccc
Confidence 987655543211 11111 0112332221
Q ss_pred HHHHHHHHHHHHHHHHHHHhcccccCCCccccCC--hhhHHHHHHHHHHHHHcCceeecCcccccCCCCCcccCcccccc
Q 003578 169 RVWEWKEKYGGTITSQIKRLGASCDWTRERFTLD--EQLSRAVVEAFIRLHEKGLIYQGSYMVNWSPNLQTAVSDLEVEY 246 (809)
Q Consensus 169 ~~~~~~~~~~~~~~~~l~~lgi~~Dw~~~~~T~d--~~~~~~v~~~f~~L~~~Gliy~~~~~v~w~p~~~t~lsd~Ev~~ 246 (809)
....|...+--.-.++++++|..+||+|+|.|+| |.|..+|+|+|.+|.+.|.|..|++...|||++++++.||+..-
T Consensus 176 d~~~WL~yFPpLc~~dlk~~gl~iDWRRSFITTDvNpYyDsFVRWQ~n~L~~~gkI~fgkRyTIyspkDgQpCmDHDR~s 255 (1080)
T KOG0437|consen 176 DPKHWLYYFPPLCERDLKRFGLGIDWRRSFITTDVNPYYDSFVRWQFNKLKEAGKIKFGKRYTIYSPKDGQPCMDHDRAS 255 (1080)
T ss_pred ChhHHHHhCChHHHHHHHHhCCCcceeeeeeecccchhHHHHHHHHHHHHHhcCCcccCcceeeecCCCCCccccccccc
Confidence 2557888888888999999999999999999986 78999999999999999999999999999999999999999999
Q ss_pred ccCCCceEEE--EEEec-----------CCCeeEEEEecCCccccCCcEEEECCCCch----------------------
Q 003578 247 SEEPGTLYYI--KYRVA-----------GRSDFLTIATTRPETLFGDVALAVNPQDEH---------------------- 291 (809)
Q Consensus 247 ~~~~~~~~~~--~f~~~-----------~~~~~l~v~Tt~petl~~~~av~v~p~~~~---------------------- 291 (809)
.|..++.-|. |.++. +.+.|++.+|.||||++|.+.++|+|+.++
T Consensus 256 GEgV~PqeytliKle~le~~p~~l~~~~~~~v~lvAaTLRpetmyGQTnc~V~p~~~y~~fe~~~~~e~fi~t~raa~Nm 335 (1080)
T KOG0437|consen 256 GEGVGPQEYTLIKLEVLEPFPKALSSLKDLRVYLVAATLRPETMYGQTNCYVGPDIKYGGFEACNETEVFIATERAARNM 335 (1080)
T ss_pred CCCCCcceEEEEEEEecccchhhccccccceeeeeehhcCCccccCccceEEcCCccEEeEEecCCceEEEeehHHHhhc
Confidence 9988885554 44332 234789999999999999999999999642
Q ss_pred -h------------------hhcccCeeecCCCCCCeeeEEecCCccccCCCCceeecCCCChhhHHHHHH-------hC
Q 003578 292 -Y------------------SQFIGMMAIVPMTYGRHVPIISDKYVDKEFGTGVLKISPGHDHNDYLLARK-------LG 345 (809)
Q Consensus 292 -y------------------~~l~g~~~~~P~~~~~~vpi~~~~~V~~~~GTG~v~~~P~h~~~D~~~~~~-------~~ 345 (809)
| .+++|..+..|++-...|.+++..-|..+.|||+|.++|+.+|+||...+. ||
T Consensus 336 syQ~~tk~~g~~~~~~~i~G~~~iGa~l~aPlsv~~~vy~LPMlTi~~~KGTGvVtsVpsdsPDDf~al~dL~kK~~lYg 415 (1080)
T KOG0437|consen 336 SYQKLTKERGVVSCLVTITGYDLIGAPLSAPLSVYERVYALPMLTILATKGTGVVTSVPSDSPDDFAALQDLKKKPELYG 415 (1080)
T ss_pred chhhccccCCcccceeeecchhhcCCcccCcchhhheeeeccceeeeccCCceeEEeCCCCCchhhhHHHhhhhcccccC
Confidence 1 257888899999888999999999999999999999999999999998744 33
Q ss_pred C----------CceeecCCCCccc-----------------------------------ccccccCCCCHHHHHHHHHHH
Q 003578 346 L----------PILNVMNKDGTLN-----------------------------------EVAGLFRGLDRFEARKKLWSD 380 (809)
Q Consensus 346 l----------~~~~~~~~~G~~~-----------------------------------~~~g~~~G~~~~~a~~~i~~~ 380 (809)
| |||.+.. -|+++ .-.|.|.|.+|.+++..|..+
T Consensus 416 ~~~ew~~~E~vPii~~~~-fGdl~ae~vc~~lKiqs~~dk~klaeaK~~~y~e~fy~g~mlig~y~G~KVe~~K~~i~~~ 494 (1080)
T KOG0437|consen 416 LKPEWVLFEIVPIIRIPG-FGDLAAEVVCDELKIQSPNDKKKLAEAKKLAYLEGFYEGTMLIGKYKGEKVEDAKPKIKTD 494 (1080)
T ss_pred CChhhccccccceeeccc-cchhhHHHHHHHHhccCchhHHHHHHhhHHHHHHhhhcceEEEeccccccHHhhhhHHHHH
Confidence 2 4443321 12111 125889999999999999999
Q ss_pred HHHCCCeeee-ecccccCcccccCCCeeEEeeccceeeeccH--HHHHHHHHHhcCCceEecchhHHHHHHHHhcCCcee
Q 003578 381 LEETGLAVKK-EPHTLRVPRSQRGGEVIEPLVSKQWFVTMEP--LAEKALHAVEKGELTIMPERFEKIYNHWLSNIKDWC 457 (809)
Q Consensus 381 L~~~g~~~~~-~~~~~~~p~c~r~~~~i~~~~~~qwfl~~~~--~~~~~~~~~~~~~~~~~P~~~~~~~~~~l~~l~Dw~ 457 (809)
|.+.|.+++. ||- -++-.|||+.++..+.+||||++.+ +++.+.+.+++ ++...+..++.+..-|++|..|.
T Consensus 495 li~~g~a~~y~EPE---kqVmSRSGdeCiVAL~DQWYldYgE~eWKk~a~~cLe~--l~~f~dEtR~~fE~tLdWL~~wa 569 (1080)
T KOG0437|consen 495 LIETGDALKYNEPE---KQVMSRSGDECIVALCDQWYLDYGEAEWKKQAKECLEN--LNTFSDETRNGFEDTLDWLGQWA 569 (1080)
T ss_pred HHhcccceeecCcc---hhhhccCCCceEEEeccchhhhcCcHHHHHHHHHHHhh--hhccCHHHHHHHHHHHHHHHhhh
Confidence 9999999874 433 3456799999999999999999975 88899999874 65677788899999999999999
Q ss_pred eeccccccceeeEEEEcCCcccEEEcC-----------ChhHHHHHHhhhcCC-----CccccccCC-ccceeecccCcc
Q 003578 458 ISRQLWWGHRIPVWYIVGKEEEYIVAR-----------NADEALEKAHQKYGK-----NVEIYQDPD-VLDTWFSSALWP 520 (809)
Q Consensus 458 ISRq~~WG~piP~~~~~~~~~~~~~~~-----------~~~~~~~~~~~~~~~-----~~~~~~~~d-vld~Wfds~~~~ 520 (809)
+||.-+.|++||+ +++|++.. ++..++.+ .-+|. ++...|-+| |+|.-|--.. |
T Consensus 570 csRsyGLGTrlPW------D~qyLvESLSDSTIYmAyYTvaHll~~--d~~g~~~~plgi~~~QMtdeVwdYvF~~~~-~ 640 (1080)
T KOG0437|consen 570 CSRSYGLGTRLPW------DEQYLVESLSDSTIYMAYYTVAHLLHR--DLYGKVEGPLGIKPDQMTDEVWDYVFLNEP-Y 640 (1080)
T ss_pred hhccccCCCCCCC------cHHHHHHhcchhHHHHHHHHHHHHHHH--hhccCCcccCCCChhhcCHHHHHHhhccCC-C
Confidence 9999999999997 55554432 22233333 12222 122223222 3332222111 1
Q ss_pred ceecCCCCC----ChhhhhhcCCCcEEEeeehhHHhHHHHHHHHHHHhc--CCCCceeEEEeeeEEccCCCcccccccCc
Q 003578 521 FSTLGWPDV----SADDFKKFYPTTMLETGHDILFFWVARMVMMGIEFT--GSVPFSHVYLHGLIRDSQGRKMSKTLGNV 594 (809)
Q Consensus 521 ~~~~~~~~~----~~~~~~~~~p~d~~~~G~Di~~~w~~~~~~~~~~l~--~~~Pf~~v~~hg~vld~~G~KMSKS~GN~ 594 (809)
......+.+ -+.+|++|||.|++++|+|.+..|+.+++..+.++. .++| +.+.++|+++ .|++|||||.||+
T Consensus 641 ~k~t~i~~e~L~~lr~eF~Y~YPiDlrvsGKDLi~NHLtfflynHvAl~~~k~WP-kgiraNGHLm-LNsEKMSKSTGNf 718 (1080)
T KOG0437|consen 641 PKNTAIPEEALSNLRREFEYFYPIDLRVSGKDLIPNHLTFFLYNHVALFPEKKWP-KGIRANGHLM-LNSEKMSKSTGNF 718 (1080)
T ss_pred CcCCCccHHHHHHHHHhhhcccceeeeeccccccccceeEeeeehhhhcccccCc-cceeeCceEE-ecchhhccccCCe
Confidence 111111111 157899999999999999999888888777666654 4678 8999999998 9999999999999
Q ss_pred cChhhHHHhhCCchHHHHHhhCCC-CCcccccHHHHHHHHHHHHHHHHHHHHHHHhCCCCCchhhHHHHhhhccchhhhh
Q 003578 595 IDPIDTIKEFGADALRFTISLGTA-GQDLSLSIERLTANKAFTNKLWNAGKFILQNLPSQNDISRWEILLAYKFDEEECL 673 (809)
Q Consensus 595 I~p~dli~~ygaD~lR~~ll~~~~-~~d~~fs~~~l~~~~~~~~kl~N~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~ 673 (809)
.++++.+++||||+.|+.|+.++- .+|.||.+... ..++-||++.+..+.+.+.+.+. +. .++
T Consensus 719 mTL~qaieKFgad~tRlalAdaGD~veDANF~ea~A---nAaILRLyt~~ew~eEm~~~~s~------Lr-tGp------ 782 (1080)
T KOG0437|consen 719 MTLEQAIEKFGADGTRLALADAGDGVEDANFVEANA---NAAILRLYTYVEWIEEMCENRSS------LR-TGP------ 782 (1080)
T ss_pred eeHHHHHHHhCccceeeeeecccCCcccchhHHhcc---cHHHHHHHHHHHHHHHHHhhHHh------hc-cCc------
Confidence 999999999999999999998877 89999987653 34556777777666654432211 11 100
Q ss_pred cCCCchhHHHHHHHHHHHHHHHHHhhcCChHHHHHH-HHHHHHHhhHHHHHHHhhhhhhcCCCcHHHHHHHHHHHHHHHH
Q 003578 674 CKAPLPECWVVSKLHMLIDTVTASYDKYFFGDVGRE-TYDFFWSDFADWYIEASKARLYRSEYDSDAIIAQAVLLYIFEN 752 (809)
Q Consensus 674 ~~l~~~d~~il~~l~~~~~~v~~a~e~~~f~~a~~~-i~~f~~~~~~n~Yi~~~k~~l~~~~~~~~~~~~~~~l~~vl~~ 752 (809)
. -...|+.+.+.++.++....++++...|..|++. .++|- ...++|-++.- ......++...+++
T Consensus 783 ~-~~FaDrvf~nemN~~i~~t~~aye~~~fk~aLK~Gfyd~q--aArD~Yrel~g-----------~~mh~dLv~r~iet 848 (1080)
T KOG0437|consen 783 A-STFADRVFENEMNALIAKTERAYEDTLFKDALKYGFYDLQ--AARDMYRELCG-----------EGMHRDLVFRFIET 848 (1080)
T ss_pred h-hhHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHhhhHHHH--HHHHHHHHHhc-----------ccccHHHHHHHHHH
Confidence 0 1257899999999999999999999999999987 56663 45677755432 11234567778889
Q ss_pred HHHHhccchhHHHHHHHHHhccCCCceEecCCCCCCCcCCHHHHH
Q 003578 753 ILKLLHPFMPFVTEELWQSLRKRKEALIVSPWPQTSLPRHMSAIK 797 (809)
Q Consensus 753 l~~lL~P~~P~~aeeiw~~L~~~~~sv~~~~wP~~~~~~d~~~~~ 797 (809)
...||+||+||+||.||+.++.++.||.. .||..+...+.....
T Consensus 849 qtlLLaPi~Ph~aeyiw~~~~~~~~~v~~-~wP~~s~~~e~~~~~ 892 (1080)
T KOG0437|consen 849 QTLLLAPICPHLAEYIWRTVLKKNFSVNV-GWPFVSPPDEKLGSS 892 (1080)
T ss_pred HHHHHhccchHHHHHHHHHhccCCceeec-CCCCCCCHHHHhhhh
Confidence 99999999999999999999888766655 999998754433333
No 39
>cd00818 IleRS_core catalytic core domain of isoleucyl-tRNA synthetases. Isoleucine amino-acyl tRNA synthetases (IleRS) catalytic core domain . This class I enzyme is a monomer which aminoacylates the 2'-OH of the nucleotide at the 3' of the appropriate tRNA. The core domain is based on the Rossman fold and is responsible for the ATP-dependent formation of the enzyme bound aminoacyl-adenylate. It contains the characteristic class I HIGH and KMSKS motifs, which are involved in ATP binding. IleRS has an insertion in the core domain, which is subject to both deletions and rearrangements. This editing region hydrolyzes mischarged cognate tRNAs and thus prevents the incorporation of chemically similar amino acids.
Probab=100.00 E-value=6.2e-77 Score=649.98 Aligned_cols=336 Identities=35% Similarity=0.686 Sum_probs=308.0
Q ss_pred CCEEEeCCCCCCCCCCcchhhHHHHHHHHHHHHHHHCCCcccccCCCCCCCCchHHHHHHHHHHcC-CCccccCHHHHHH
Q 003578 90 DPFVISMPPPNVTGSLHMGHAMFVTLEDIMVRYHRMKGRPTLWLPGTDHAGIATQLVVEKMLAAEG-IKRVELSRDEFTK 168 (809)
Q Consensus 90 ~~f~i~~~pPy~nG~lHiGH~~~~~~~Di~~Ry~rm~G~~V~~~~G~D~~Gl~~~~~~e~~~~~~g-~~~~~~~~~~f~~ 168 (809)
++|+|++|||||||.|||||+++++++|+++||+||+|++|++++|||+||+|||.++++.+...+ ..+.++++++|.+
T Consensus 1 ~~f~i~~~pP~vnG~lHiGHa~~~~~~Dvl~Ry~r~~G~~V~~~~g~D~hG~~ie~ka~k~lg~~~~~~~~~~~~~~~~~ 80 (338)
T cd00818 1 PEFVFHDGPPYANGLPHYGHALNKILKDIINRYKTMQGYYVPRRPGWDCHGLPIELKVEKELGISGKKDIEKMGIAEFNA 80 (338)
T ss_pred CCeEEecCCCCCCCCchHHHHHHHHHHHHHHHHHHhcCCccCCcCCcCCCCchhHHHHHHHhCCCCCcchhhcCHHHHHH
Confidence 469999999999999999999999999999999999999999999999999999988887653322 2457889999999
Q ss_pred HHHHHHHHHHHHHHHHHHHhcccccCCCccccCChhhHHHHHHHHHHHHHcCceeecCcccccCCCCCcccCcccccccc
Q 003578 169 RVWEWKEKYGGTITSQIKRLGASCDWTRERFTLDEQLSRAVVEAFIRLHEKGLIYQGSYMVNWSPNLQTAVSDLEVEYSE 248 (809)
Q Consensus 169 ~~~~~~~~~~~~~~~~l~~lgi~~Dw~~~~~T~d~~~~~~v~~~f~~L~~~Gliy~~~~~v~w~p~~~t~lsd~Ev~~~~ 248 (809)
.|++|++++++.+.+++++||++.||++.+.|++++|.+.++++|.+|+++|+||++.++|+|
T Consensus 81 ~~~~~~~~~~~~~~~~~~~lgi~~~~~~~~~T~~~~~~~~v~~~f~~L~~~G~iY~~~~~v~~----------------- 143 (338)
T cd00818 81 KCREFALRYVDEQEEQFQRLGVWVDWENPYKTMDPEYMESVWWVFKQLHEKGLLYRGYKVVPW----------------- 143 (338)
T ss_pred HHHHHHHHHHHHHHHHHHHhCceecCCCCeECCCHHHHHHHHHHHHHHHHCCCEeccCCeeee-----------------
Confidence 999999999999999999999999999999999999999999999999999999999988865
Q ss_pred CCCceEEEEEEecCCCeeEEEEecCCccccCCcEEEECCCCchhhhcccCeeecCCCCCCeeeEEecCCccccCCCCcee
Q 003578 249 EPGTLYYIKYRVAGRSDFLTIATTRPETLFGDVALAVNPQDEHYSQFIGMMAIVPMTYGRHVPIISDKYVDKEFGTGVLK 328 (809)
Q Consensus 249 ~~~~~~~~~f~~~~~~~~l~v~Tt~petl~~~~av~v~p~~~~y~~l~g~~~~~P~~~~~~vpi~~~~~V~~~~GTG~v~ 328 (809)
T Consensus 144 -------------------------------------------------------------------------------- 143 (338)
T cd00818 144 -------------------------------------------------------------------------------- 143 (338)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred ecCCCChhhHHHHHHhCCCceeecCCCCcccccccccCCCCHHHHHHHHHHHHHHCCCeeeeecccccCcccccCCCeeE
Q 003578 329 ISPGHDHNDYLLARKLGLPILNVMNKDGTLNEVAGLFRGLDRFEARKKLWSDLEETGLAVKKEPHTLRVPRSQRGGEVIE 408 (809)
Q Consensus 329 ~~P~h~~~D~~~~~~~~l~~~~~~~~~G~~~~~~g~~~G~~~~~a~~~i~~~L~~~g~~~~~~~~~~~~p~c~r~~~~i~ 408 (809)
+++
T Consensus 144 -----------------------------------------------------------------------------~v~ 146 (338)
T cd00818 144 -----------------------------------------------------------------------------PLI 146 (338)
T ss_pred -----------------------------------------------------------------------------EEE
Confidence 346
Q ss_pred EeeccceeeeccHHHHHHHHHHhcCCceEecchhHHHHHHHHhcCCceeeeccccccceeeEEEEcCCcccEEEcCChhH
Q 003578 409 PLVSKQWFVTMEPLAEKALHAVEKGELTIMPERFEKIYNHWLSNIKDWCISRQLWWGHRIPVWYIVGKEEEYIVARNADE 488 (809)
Q Consensus 409 ~~~~~qwfl~~~~~~~~~~~~~~~~~~~~~P~~~~~~~~~~l~~l~Dw~ISRq~~WG~piP~~~~~~~~~~~~~~~~~~~ 488 (809)
+++++||||+++++++++++++++ ++|+|+..++++.+||++|+|||||||++||+|+|+|+++++ +...
T Consensus 147 ~~~~~qwf~~l~~~~~~l~~~~~~--~~~~P~~~~~~~~~~l~~l~dw~iSR~~~WGip~P~~~~~~~-~~~~------- 216 (338)
T cd00818 147 YRATPQWFIRVTKIKDRLLEANDK--VNWIPEWVKNRFGNWLENRRDWCISRQRYWGTPIPVWYCEDC-GEVL------- 216 (338)
T ss_pred EEecCeEEEEcHHHHHHHHHHHhc--CcEECHHHHHHHHHHHhcchhcceeeecccCceeeEEEecCC-CeEE-------
Confidence 778899999999999999999974 778999999999999999999999999999999999998642 2221
Q ss_pred HHHHHhhhcCCCccccccCCccceeecccCccceecCCCCCChhhhhhcCCCcEEEeeehhHHhHHHHHHHHHHHhcCCC
Q 003578 489 ALEKAHQKYGKNVEIYQDPDVLDTWFSSALWPFSTLGWPDVSADDFKKFYPTTMLETGHDILFFWVARMVMMGIEFTGSV 568 (809)
Q Consensus 489 ~~~~~~~~~~~~~~~~~~~dvld~Wfds~~~~~~~~~~~~~~~~~~~~~~p~d~~~~G~Di~~~w~~~~~~~~~~l~~~~ 568 (809)
..++++|+||||||+++|++..+|+.++ ++|++|||+|++++|+||+++|+..+++.+.++.+..
T Consensus 217 --------------~~~~~~v~~vWfda~~~~~~~~~~~~~~-~~~~~~~p~d~~~~GkDii~~wf~~~~~~~~~~~~~~ 281 (338)
T cd00818 217 --------------VRRVPDVLDVWFDSGSMPYAQLHYPFEN-EDFEELFPADFILEGSDQTRGWFYSLLLLSTALFGKA 281 (338)
T ss_pred --------------EecCCceEEEEEeCCCCHHHHcCCCCcc-hhhhccCCCeEEeecchHHhHHHHHHHHHHHHhcCCC
Confidence 1457899999999999999999998765 6799999999999999999999999999888888888
Q ss_pred CceeEEEeeeEEccCCCcccccccCccChhhHHHhhCCchHHHHHhhCCC-CCcccc
Q 003578 569 PFSHVYLHGLIRDSQGRKMSKTLGNVIDPIDTIKEFGADALRFTISLGTA-GQDLSL 624 (809)
Q Consensus 569 Pf~~v~~hg~vld~~G~KMSKS~GN~I~p~dli~~ygaD~lR~~ll~~~~-~~d~~f 624 (809)
||+++++||++++.+|+|||||+||+|+|+|++++||+|++||||++.++ ++|++|
T Consensus 282 p~~~~~~hg~~~~~~g~KmSKS~gn~i~~~~~~~~~~~D~~R~~l~~~~~~~~d~~~ 338 (338)
T cd00818 282 PYKNVIVHGFVLDEDGRKMSKSLGNYVDPQEVVDKYGADALRLWVASSDVYAEDLRF 338 (338)
T ss_pred ccceEEEEeeEECCCCCCCCCCCCCcCCHHHHHHHcCcHHHHHHHHhCCCccCCCCC
Confidence 99999999999988999999999999999999999999999999999987 999876
No 40
>KOG0436 consensus Methionyl-tRNA synthetase [Translation, ribosomal structure and biogenesis]
Probab=100.00 E-value=1.1e-71 Score=578.04 Aligned_cols=473 Identities=24% Similarity=0.383 Sum_probs=396.1
Q ss_pred CCCEEEeCCCCCCCCCCcchhhHHHHHHHHHHHHHHHCCCcccccCCCCCCCCchHHHHHHHHHHcCCCccccCHHHHHH
Q 003578 89 SDPFVISMPPPNVTGSLHMGHAMFVTLEDIMVRYHRMKGRPTLWLPGTDHAGIATQLVVEKMLAAEGIKRVELSRDEFTK 168 (809)
Q Consensus 89 ~~~f~i~~~pPy~nG~lHiGH~~~~~~~Di~~Ry~rm~G~~V~~~~G~D~~Gl~~~~~~e~~~~~~g~~~~~~~~~~f~~ 168 (809)
.++|++|+|..|||..+||||+++.+++|+++||+|++|..|.|.+|+|+||+.||.+ +..+|..|.++
T Consensus 38 ~~~~~lTTPifYvNAaPHlGhlYS~llaDai~R~q~lkg~~v~fsTGTDEHGlKIqta----aatnG~~P~e~------- 106 (578)
T KOG0436|consen 38 GETFVLTTPIFYVNAAPHLGHLYSTLLADAIARFQRLKGKKVIFSTGTDEHGLKIQTA----AATNGRNPPEL------- 106 (578)
T ss_pred CceeEEecceeecCCCcchhHHHHHHHHHHHHHHHhhcCCceEeecCCCccchhhhhh----HhhcCCChHHH-------
Confidence 4699999999999999999999999999999999999999999999999999997654 45678888744
Q ss_pred HHHHHHHHHHHHHHHHHHHhccccc-CCCccccCChhhHHHHHHHHHHHHHcCceeecCcccccCCCCCcccCccccccc
Q 003578 169 RVWEWKEKYGGTITSQIKRLGASCD-WTRERFTLDEQLSRAVVEAFIRLHEKGLIYQGSYMVNWSPNLQTAVSDLEVEYS 247 (809)
Q Consensus 169 ~~~~~~~~~~~~~~~~l~~lgi~~D-w~~~~~T~d~~~~~~v~~~f~~L~~~Gliy~~~~~v~w~p~~~t~lsd~Ev~~~ 247 (809)
++...+.+++.++.+||.++ |-| |+||.|...||+++..+.++|+||++.+...||..|+|+..+.+|.-.
T Consensus 107 -----cDr~s~~f~qL~k~~gi~yt~FIR---TTdpkH~a~Vqefw~~~~knG~iy~g~~eGwYcvsdEtf~pEskv~k~ 178 (578)
T KOG0436|consen 107 -----CDRISQSFRQLWKDAGIAYTKFIR---TTDPKHEAIVQEFWARVFKNGDIYRGDYEGWYCVSDETFYPESKVLKN 178 (578)
T ss_pred -----HhhhhHHHHHHHHHhCcchhheee---cCCchHHHHHHHHHHHHHhCCceeeecccceEeccccccCCHHHHhcC
Confidence 36778889999999999999 888 999999999999999999999999999999999999998888666211
Q ss_pred cCCCceEEEEEEecCCCeeEEEEecCCccccCCcEEEECCCCchhhhcccCeeecCCCCCCeeeEEecCCccccCCCCce
Q 003578 248 EEPGTLYYIKYRVAGRSDFLTIATTRPETLFGDVALAVNPQDEHYSQFIGMMAIVPMTYGRHVPIISDKYVDKEFGTGVL 327 (809)
Q Consensus 248 ~~~~~~~~~~f~~~~~~~~l~v~Tt~petl~~~~av~v~p~~~~y~~l~g~~~~~P~~~~~~vpi~~~~~V~~~~GTG~v 327 (809)
.
T Consensus 179 p------------------------------------------------------------------------------- 179 (578)
T KOG0436|consen 179 P------------------------------------------------------------------------------- 179 (578)
T ss_pred C-------------------------------------------------------------------------------
Confidence 0
Q ss_pred eecCCCChhhHHHHHHhCCCceeecCCCCcccccccccCCCCHHHHHHHHHHHHHHCCCeeeeecccccCcccccCCCee
Q 003578 328 KISPGHDHNDYLLARKLGLPILNVMNKDGTLNEVAGLFRGLDRFEARKKLWSDLEETGLAVKKEPHTLRVPRSQRGGEVI 407 (809)
Q Consensus 328 ~~~P~h~~~D~~~~~~~~l~~~~~~~~~G~~~~~~g~~~G~~~~~a~~~i~~~L~~~g~~~~~~~~~~~~p~c~r~~~~i 407 (809)
|| .| .+++--||+++
T Consensus 180 --~~-----------------------~g----------------------------------------k~vsmEsg~~v 194 (578)
T KOG0436|consen 180 --CP-----------------------PG----------------------------------------KVVSMESGNPV 194 (578)
T ss_pred --CC-----------------------CC----------------------------------------ceeeeccCCce
Confidence 00 00 01223378899
Q ss_pred EEeeccceeeeccHHHHHHHHHHhcCCceEecchhHHHHHHHH-hcCCceeeec--c-ccccceeeEEEEcCCcccEEEc
Q 003578 408 EPLVSKQWFVTMEPLAEKALHAVEKGELTIMPERFEKIYNHWL-SNIKDWCISR--Q-LWWGHRIPVWYIVGKEEEYIVA 483 (809)
Q Consensus 408 ~~~~~~qwfl~~~~~~~~~~~~~~~~~~~~~P~~~~~~~~~~l-~~l~Dw~ISR--q-~~WG~piP~~~~~~~~~~~~~~ 483 (809)
..+.+++|||+++++++++.+++++++-.+.|+..+..+.+|| ++|+|..||| + ..||+|+| ++
T Consensus 195 v~~kE~NY~FrLSkfqk~l~d~lrkNP~fvqPs~~~~qVl~~lktglpDlSISRpsarl~WGIPvP-------~d----- 262 (578)
T KOG0436|consen 195 VWRKEDNYFFRLSKFQKPLEDHLRKNPRFVQPSYFHNQVLSWLKTGLPDLSISRPSARLDWGIPVP-------GD----- 262 (578)
T ss_pred eEecccceeeeHHhhhhHHHHHHhcCCCccCchHHHHHHHHHHHcCCCcccccChhhhcccCCCCC-------CC-----
Confidence 9999999999999999999999999999999999999999999 5899999999 3 79999999 32
Q ss_pred CChhHHHHHHhhhcCCCccccccCCccceeecccCccceecCCCCCC---hhhhhhcCCCcEEEeeehhHHh----HHHH
Q 003578 484 RNADEALEKAHQKYGKNVEIYQDPDVLDTWFSSALWPFSTLGWPDVS---ADDFKKFYPTTMLETGHDILFF----WVAR 556 (809)
Q Consensus 484 ~~~~~~~~~~~~~~~~~~~~~~~~dvld~Wfds~~~~~~~~~~~~~~---~~~~~~~~p~d~~~~G~Di~~~----w~~~ 556 (809)
+.+++|||||+.+.|++.+|+|.+. ...+.-+||+.+|++|+||++| |+++
T Consensus 263 ----------------------dsQtIYVWfDAL~nYiSvig~~~~~~N~k~~ls~~wPat~HvIGKDIlrFHavYWPaf 320 (578)
T KOG0436|consen 263 ----------------------DSQTIYVWFDALLNYISVIGYPNKQQNLKTALSFGWPATLHVIGKDILRFHAVYWPAF 320 (578)
T ss_pred ----------------------CcceEEEeHHHHhhHHHhhcCCchhccccceeecCCCceeeehhhhhhhhhhhhhHHH
Confidence 4579999999999999999999643 3568889999999999999985 9999
Q ss_pred HHHHHHHhcCCCCceeEEEeeeEEccCCCcccccccCccChhhHHHhhCCchHHHHHhhCCC-CCcccccHHHHHH--HH
Q 003578 557 MVMMGIEFTGSVPFSHVYLHGLIRDSQGRKMSKTLGNVIDPIDTIKEFGADALRFTISLGTA-GQDLSLSIERLTA--NK 633 (809)
Q Consensus 557 ~~~~~~~l~~~~Pf~~v~~hg~vld~~G~KMSKS~GN~I~p~dli~~ygaD~lR~~ll~~~~-~~d~~fs~~~l~~--~~ 633 (809)
+|+.|+.+ | +.+++||+++ .+|.|||||+||||+|.+++++||+|++||||+...- +.|.||+++.+.. +.
T Consensus 321 LmaAGlpl----P-~~I~vHghwt-~ngmKMsKSLGNvvdP~~l~~kygvD~vRyflLr~~~l~~Dgdy~eekl~k~~n~ 394 (578)
T KOG0436|consen 321 LMAAGLPL----P-KMIFVHGHWT-KNGMKMSKSLGNVVDPFELVQKYGVDAVRYFLLREGELGNDGDYSEEKLIKIVNA 394 (578)
T ss_pred HHhcCCCC----c-cEEEEeeeee-ecceecchhhccccCHHHHHHHhCccceeeEeeeccccCCCCCccHHHHHHHHHH
Confidence 88877643 5 9999999996 9999999999999999999999999999999998887 9999999999987 68
Q ss_pred HHHHHHHHHHHHHHHhCCCCCchhhHHHHhhhccchhhhhcCCCchhHHHHHHHHHHHHHHHHHhhcCChHHHHHHHHHH
Q 003578 634 AFTNKLWNAGKFILQNLPSQNDISRWEILLAYKFDEEECLCKAPLPECWVVSKLHMLIDTVTASYDKYFFGDVGRETYDF 713 (809)
Q Consensus 634 ~~~~kl~N~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~~d~~il~~l~~~~~~v~~a~e~~~f~~a~~~i~~f 713 (809)
.+.++|+|+++++.+.- +....-...+....+ .....+.-+...+.++.+.+.+.|+++.+..|++++.+.
T Consensus 395 ~La~~lG~LlnRc~gkk--ln~sn~e~~l~~~s~-------~v~ae~~~lv~~v~kl~ev~a~~~d~f~~~~ale~V~si 465 (578)
T KOG0436|consen 395 HLANTLGNLLNRCLGKK--LNISNCESTLVVDSP-------TVAAEGEPLVDTVEKLPEVAATNYDNFSLYSALEAVLSI 465 (578)
T ss_pred HHHHHHHHHHHHHhhcc--cChhccccccccCCc-------chhhccchHHHHHHHhHHHHHhhcccccHHHHHHHHHHH
Confidence 89999999999988731 111000000000000 011123347788999999999999999999999999999
Q ss_pred HHHhhHHHHHHHhhhhhhcCCCcHHH---HHHHHHHHHHHHHHHHHhccchhHHHHHHHHHhccC
Q 003578 714 FWSDFADWYIEASKARLYRSEYDSDA---IIAQAVLLYIFENILKLLHPFMPFVTEELWQSLRKR 775 (809)
Q Consensus 714 ~~~~~~n~Yi~~~k~~l~~~~~~~~~---~~~~~~l~~vl~~l~~lL~P~~P~~aeeiw~~L~~~ 775 (809)
+ .-.|-|++..+||....+..... .....++++|++.+.+||+|+||.++.+++++|+-.
T Consensus 466 ~--n~~ntlvq~~aPWkl~~dsq~~~~~la~~~~~~le~lrv~~illqpv~Psls~~llsqlgvs 528 (578)
T KOG0436|consen 466 G--NAGNTLVQQRAPWKLFKDSQVSAEELAKVLHIILEVLRVIGILLQPVAPSLSLRLLSQLGVS 528 (578)
T ss_pred H--HhhhhhhhhcCCceeccccCccHHHHHHHHHHHHHHHHHHHHHHccccchhHHHHHHHcCCC
Confidence 7 46899999999998765333222 233445677888899999999999999999999854
No 41
>PF09334 tRNA-synt_1g: tRNA synthetases class I (M); InterPro: IPR015413 The aminoacyl-tRNA synthetases (6.1.1. from EC) catalyse the attachment of an amino acid to its cognate transfer RNA molecule in a highly specific two-step reaction. These proteins differ widely in size and oligomeric state, and have limited sequence homology []. The 20 aminoacyl-tRNA synthetases are divided into two classes, I and II. Class I aminoacyl-tRNA synthetases contain a characteristic Rossman fold catalytic domain and are mostly monomeric []. Class II aminoacyl-tRNA synthetases share an anti-parallel beta-sheet fold flanked by alpha-helices [], and are mostly dimeric or multimeric, containing at least three conserved regions [, , ]. However, tRNA binding involves an alpha-helical structure that is conserved between class I and class II synthetases. In reactions catalysed by the class I aminoacyl-tRNA synthetases, the aminoacyl group is coupled to the 2'-hydroxyl of the tRNA, while, in class II reactions, the 3'-hydroxyl site is preferred. The synthetases specific for arginine, cysteine, glutamic acid, glutamine, isoleucine, leucine, methionine, tyrosine, tryptophan and valine belong to class I synthetases. The synthetases specific for alanine, asparagine, aspartic acid, glycine, histidine, lysine, phenylalanine, proline, serine, and threonine belong to class-II synthetases []. Based on their mode of binding to the tRNA acceptor stem, both classes of tRNA synthetases have been subdivided into three subclasses, designated 1a, 1b, 1c and 2a, 2b, 2c. This domain is found in methionyl and leucyl tRNA synthetases. ; GO: 0000166 nucleotide binding, 0004812 aminoacyl-tRNA ligase activity, 0005524 ATP binding, 0006418 tRNA aminoacylation for protein translation, 0005737 cytoplasm; PDB: 2D5B_A 1A8H_A 1WOY_A 2D54_A 4DLP_A 2CT8_B 2CSX_A 1MED_A 1PFU_A 1PFW_A ....
Probab=100.00 E-value=9.4e-71 Score=609.59 Aligned_cols=374 Identities=30% Similarity=0.503 Sum_probs=303.6
Q ss_pred EEEeCCCCCCCCCCcchhhHHHHHHHHHHHHHHHCCCcccccCCCCCCCCchHHHHHHHHHHcCCCccccCHHHHHHHHH
Q 003578 92 FVISMPPPNVTGSLHMGHAMFVTLEDIMVRYHRMKGRPTLWLPGTDHAGIATQLVVEKMLAAEGIKRVELSRDEFTKRVW 171 (809)
Q Consensus 92 f~i~~~pPy~nG~lHiGH~~~~~~~Di~~Ry~rm~G~~V~~~~G~D~~Gl~~~~~~e~~~~~~g~~~~~~~~~~f~~~~~ 171 (809)
|+||+|+|||||.|||||++.++.+|+++||+||+|++|+|++|+|+||++| +++|.+.|++|+
T Consensus 1 ~~ITt~~pY~Ng~lHlGH~~~~l~ADv~aR~~r~~G~~v~~~tGtDehG~~i----~~~A~~~g~~p~------------ 64 (391)
T PF09334_consen 1 FYITTPIPYPNGDLHLGHLYPYLAADVLARYLRLRGHDVLFVTGTDEHGSKI----ETAAEKQGIDPE------------ 64 (391)
T ss_dssp EEEEEEEEETSSS-BHHHHHHHHHHHHHHHHHHHTT-EEEEEEEEE-SSHHH----HHHHHHTTS-HH------------
T ss_pred CEEecCCCCCCCCCCCChhHHHHHHHHHHHHHhhcccceeeEEecchhhHHH----HHHHHHcCCCHH------------
Confidence 7899999999999999999999999999999999999999999999999995 455667899987
Q ss_pred HHHHHHHHHHHHHHHHhccccc-CCCccccCChhhHHHHHHHHHHHHHcCceeecCcccccCCCCCcccCccccccccCC
Q 003578 172 EWKEKYGGTITSQIKRLGASCD-WTRERFTLDEQLSRAVVEAFIRLHEKGLIYQGSYMVNWSPNLQTAVSDLEVEYSEEP 250 (809)
Q Consensus 172 ~~~~~~~~~~~~~l~~lgi~~D-w~~~~~T~d~~~~~~v~~~f~~L~~~Gliy~~~~~v~w~p~~~t~lsd~Ev~~~~~~ 250 (809)
++++++++.+++.++++||++| |.| |+++.|.++|+++|.+|+++|+||+++..+.||+.|++.+++.+|+
T Consensus 65 ~~~~~~~~~~~~~~~~~~I~~D~F~r---Tt~~~h~~~v~~i~~~L~~~G~I~~~~~~~~Yc~~~e~fl~e~~v~----- 136 (391)
T PF09334_consen 65 EFCDKYSAKFKELLEALNISYDRFIR---TTDDRHKEFVQEIFKRLYDNGYIYKREYEGWYCPSCERFLPESFVE----- 136 (391)
T ss_dssp HHHHHHHHHHHHHHHHTT---SEEEE---TTSHHHHHHHHHHHHHHHHTTSEEEEEEEEEEETTTTEEE-GGGET-----
T ss_pred HHHHHHHHHHHHHHHHcCCCCcceeC---CCCHHHHHHHHHHHHHHHhcCceeecccceeEecCcCcccccceee-----
Confidence 4567899999999999999999 777 8999999999999999999999999999999999999999997662
Q ss_pred CceEEEEEEecCCCeeEEEEecCCccccCCcEEEECCCCchhhhcccCeeecCCCCCCeeeEEecCCccccCCCCceeec
Q 003578 251 GTLYYIKYRVAGRSDFLTIATTRPETLFGDVALAVNPQDEHYSQFIGMMAIVPMTYGRHVPIISDKYVDKEFGTGVLKIS 330 (809)
Q Consensus 251 ~~~~~~~f~~~~~~~~l~v~Tt~petl~~~~av~v~p~~~~y~~l~g~~~~~P~~~~~~vpi~~~~~V~~~~GTG~v~~~ 330 (809)
| .|
T Consensus 137 ------------------------------------------------------------------------g-----~C 139 (391)
T PF09334_consen 137 ------------------------------------------------------------------------G-----TC 139 (391)
T ss_dssp ------------------------------------------------------------------------C-----EE
T ss_pred ------------------------------------------------------------------------c-----cc
Confidence 1 24
Q ss_pred CCCChhhHHHHHHhCCCceeecCCCCcccccccccCCCCHHHHHHHHHHHHHHCCCeeeeecccccCcccccCCCeeEEe
Q 003578 331 PGHDHNDYLLARKLGLPILNVMNKDGTLNEVAGLFRGLDRFEARKKLWSDLEETGLAVKKEPHTLRVPRSQRGGEVIEPL 410 (809)
Q Consensus 331 P~h~~~D~~~~~~~~l~~~~~~~~~G~~~~~~g~~~G~~~~~a~~~i~~~L~~~g~~~~~~~~~~~~p~c~r~~~~i~~~ 410 (809)
|.|+. -..+|..|++||.. .++.++..|+|..||++++.+
T Consensus 140 P~C~~----------------~~a~g~~Ce~cG~~------------------------~~~~~l~~p~~~~~g~~~~~r 179 (391)
T PF09334_consen 140 PYCGS----------------DKARGDQCENCGRP------------------------LEPEELINPVCKICGSPPEVR 179 (391)
T ss_dssp TTT------------------SSCTTTEETTTSSB------------------------EECCCSECEEETTTS-B-EEE
T ss_pred cCcCc----------------cccCCCcccCCCCC------------------------cccccccCCccccccccCccc
Confidence 54432 24589999999975 678889999999999999999
Q ss_pred eccceeeeccHHHHHHHHHHhcCCceEecchhHHHHHHHHh-cCCceeeeccccccceeeEEEEcCCcccEEEcCChhHH
Q 003578 411 VSKQWFVTMEPLAEKALHAVEKGELTIMPERFEKIYNHWLS-NIKDWCISRQLWWGHRIPVWYIVGKEEEYIVARNADEA 489 (809)
Q Consensus 411 ~~~qwfl~~~~~~~~~~~~~~~~~~~~~P~~~~~~~~~~l~-~l~Dw~ISRq~~WG~piP~~~~~~~~~~~~~~~~~~~~ 489 (809)
.++||||+++++++.+.+++++.+.. .|+..++.+.+||+ +|+||||||...||+|+| ++
T Consensus 180 ~e~~~ff~L~~~~~~L~~~l~~~~~~-~~~~~~~~~~~~l~~~L~d~~Is~~~~WGI~vP-------~~----------- 240 (391)
T PF09334_consen 180 EEENYFFKLSKFRDQLREWLESNPDF-PPPRVREIVRNWLKEGLPDLSISRPLDWGIPVP-------GD----------- 240 (391)
T ss_dssp EEEEEEE-GGGGHHHHHHHHHHSTTS-SHHHHHHHHHHHHHT----EE-ECTTSSSEEET-------TE-----------
T ss_pred cceEEEEehHHhHHHHHHHHhcCCCC-CChhHHHHHHHHhhcccCceeeecCCCCcceee-------cc-----------
Confidence 99999999999999999999875533 77788889999995 599999999999999999 11
Q ss_pred HHHHhhhcCCCccccccCCccceeecccCccceecCCCC---CChhhhhhcCC-----CcEEEeeehhHHh----HHHHH
Q 003578 490 LEKAHQKYGKNVEIYQDPDVLDTWFSSALWPFSTLGWPD---VSADDFKKFYP-----TTMLETGHDILFF----WVARM 557 (809)
Q Consensus 490 ~~~~~~~~~~~~~~~~~~dvld~Wfds~~~~~~~~~~~~---~~~~~~~~~~p-----~d~~~~G~Di~~~----w~~~~ 557 (809)
+..|+|||||+.+.|++.+++.. .....|+++|+ .-+|++|+||++| |++.+
T Consensus 241 ----------------~~~~iyVWfdal~~Ylt~~~~~~~~~~~~~~~~~~w~~~~~~~~v~~iGkDi~~fH~i~~pa~l 304 (391)
T PF09334_consen 241 ----------------PGQVIYVWFDALIGYLTATGYLAEKRGDPEEFKKWWANDSDVEIVHFIGKDIIRFHAIYWPAML 304 (391)
T ss_dssp ----------------EEEEE-HHHHHHTHHHHTTTTTHHHTTTSHHHHHHHCST--SEEEEEEEGGGHHHHHTHHHHHH
T ss_pred ----------------CCceEEEcchHHHHHHHHhccccccccccchhhhhccccCCceEEEEEccchhHHHHHHhHHHH
Confidence 34699999999999999988765 22367888882 2289999999986 55554
Q ss_pred HHHHHHhcCCCCceeEEEeeeEEccCCCcccccccCccChhhHHHhhCCchHHHHHhhCCC-CCcccccHHHHHH--HHH
Q 003578 558 VMMGIEFTGSVPFSHVYLHGLIRDSQGRKMSKTLGNVIDPIDTIKEFGADALRFTISLGTA-GQDLSLSIERLTA--NKA 634 (809)
Q Consensus 558 ~~~~~~l~~~~Pf~~v~~hg~vld~~G~KMSKS~GN~I~p~dli~~ygaD~lR~~ll~~~~-~~d~~fs~~~l~~--~~~ 634 (809)
++ ..-.+| +++++|||++ .+|+|||||+||+|+|.|++++||+|++||||++..+ .+|.+|+++.+.. +.+
T Consensus 305 ~a----~~~~lP-~~i~~~~~~~-~~g~K~SkS~gn~i~~~~~~~~~~~D~~R~~L~~~~~~~~d~~F~~~~~~~~~n~~ 378 (391)
T PF09334_consen 305 LA----AGLPLP-RRIVVHGFLT-LDGEKMSKSRGNVIWPDDLLEEYGADALRYYLAREGPEGQDSDFSWEDFIERVNNE 378 (391)
T ss_dssp HH----CTB----SEEEEE--EE-ETTCCEETTTTESSBHHHHHHHH-HHHHHHHHHHHSSTTS-EEE-HHHHHHHHHHC
T ss_pred hc----ccCCCC-CEEEeeeeEE-ECCeeccccCCcccCHHHHHHhCChHHHHHHHHHhcCCCCCCCCCHHHHHHHHHHH
Confidence 44 333446 8999999997 8999999999999999999999999999999999888 9999999999977 678
Q ss_pred HHHHHHHHHHHHH
Q 003578 635 FTNKLWNAGKFIL 647 (809)
Q Consensus 635 ~~~kl~N~~~~~~ 647 (809)
+.+.++|++++++
T Consensus 379 L~~~~gNl~~R~~ 391 (391)
T PF09334_consen 379 LANTLGNLVNRVL 391 (391)
T ss_dssp CCCCHHHHHHHHH
T ss_pred HHHhhhhHHhccC
Confidence 8999999988763
No 42
>cd00668 Ile_Leu_Val_MetRS_core catalytic core domain of isoleucyl, leucyl, valyl and methioninyl tRNA synthetases. Catalytic core domain of isoleucyl, leucyl, valyl and methioninyl tRNA synthetases. These class I enzymes are all monomers. However, in some species, MetRS functions as a homodimer, as a result of an additional C-terminal domain. These enzymes aminoacylate the 2'-OH of the nucleotide at the 3' of the appropriate tRNA. The core domain is based on the Rossman fold and is responsible for the ATP-dependent formation of the enzyme bound aminoacyl-adenylate. It contains the characteristic class I HIGH and KMSKS motifs, which are involved in ATP binding. Enzymes in this subfamily share an insertion in the core domain, which is subject to both deletions and rearrangements. This editing region hydrolyzes mischarged cognate tRNAs and thus prevents the incorporation of chemically similar amino acids. MetRS has a significantly shorter insertion, which lacks the editing function.
Probab=100.00 E-value=1.8e-67 Score=572.15 Aligned_cols=311 Identities=39% Similarity=0.743 Sum_probs=285.4
Q ss_pred CEEEeCCCCCCCCCCcchhhHHHHHHHHHHHHHHHCCCcccccCCCCCCCCchHHHHHHHHHHcCCCccccCHHHHHHHH
Q 003578 91 PFVISMPPPNVTGSLHMGHAMFVTLEDIMVRYHRMKGRPTLWLPGTDHAGIATQLVVEKMLAAEGIKRVELSRDEFTKRV 170 (809)
Q Consensus 91 ~f~i~~~pPy~nG~lHiGH~~~~~~~Di~~Ry~rm~G~~V~~~~G~D~~Gl~~~~~~e~~~~~~g~~~~~~~~~~f~~~~ 170 (809)
+|+|++|||||||.|||||+++++++|+++||+||+|++|.+++|||+||+||+.++++.. +.+.....+++|.+.|
T Consensus 1 ~~~i~~~pP~~~g~~HiGH~~~~i~~D~i~R~~r~~G~~v~~~~g~D~~g~~i~~~a~~~~---~~~~~~~~~~~~~~~~ 77 (312)
T cd00668 1 KFYVTTPPPYANGSLHLGHALTHIIADFIARYKRMRGYEVPFLPGWDTHGLPIELKAERKG---GRKKKTIWIEEFREDP 77 (312)
T ss_pred CEEEecCCCCCCCCcchhHHHHHHHHHHHHHHHHhCCCCCCCCCccCCCCHHHHHHHHHhc---CcccccccHHHHHHHH
Confidence 5999999999999999999999999999999999999999999999999999888877643 3334445588999999
Q ss_pred HHHHHHHHHHHHHHHHHhcccccCCCccccCChhhHHHHHHHHHHHHHcCceeecCcccccCCCCCcccCccccccccCC
Q 003578 171 WEWKEKYGGTITSQIKRLGASCDWTRERFTLDEQLSRAVVEAFIRLHEKGLIYQGSYMVNWSPNLQTAVSDLEVEYSEEP 250 (809)
Q Consensus 171 ~~~~~~~~~~~~~~l~~lgi~~Dw~~~~~T~d~~~~~~v~~~f~~L~~~Gliy~~~~~v~w~p~~~t~lsd~Ev~~~~~~ 250 (809)
++|++++++.|+++|++||+++||++.+.|+++.|.+.|+++|.+|+++|+||++.++|
T Consensus 78 ~~~~~~~~~~~~~~l~~lgI~~Dw~~~~~T~~~~~~~~v~~~f~~L~~~G~iY~~~~~v--------------------- 136 (312)
T cd00668 78 KEFVEEMSGEHKEDFRRLGISYDWSDEYITTEPEYSKAVELIFSRLYEKGLIYRGTHPV--------------------- 136 (312)
T ss_pred HHHHHHHHHHHHHHHHHhCccccCCCCeECCCHHHHHHHHHHHHHHHHCCCEEeeccee---------------------
Confidence 99999999999999999999999999999999999999999999999999999988654
Q ss_pred CceEEEEEEecCCCeeEEEEecCCccccCCcEEEECCCCchhhhcccCeeecCCCCCCeeeEEecCCccccCCCCceeec
Q 003578 251 GTLYYIKYRVAGRSDFLTIATTRPETLFGDVALAVNPQDEHYSQFIGMMAIVPMTYGRHVPIISDKYVDKEFGTGVLKIS 330 (809)
Q Consensus 251 ~~~~~~~f~~~~~~~~l~v~Tt~petl~~~~av~v~p~~~~y~~l~g~~~~~P~~~~~~vpi~~~~~V~~~~GTG~v~~~ 330 (809)
T Consensus 137 -------------------------------------------------------------------------------- 136 (312)
T cd00668 137 -------------------------------------------------------------------------------- 136 (312)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred CCCChhhHHHHHHhCCCceeecCCCCcccccccccCCCCHHHHHHHHHHHHHHCCCeeeeecccccCcccccCCCeeEEe
Q 003578 331 PGHDHNDYLLARKLGLPILNVMNKDGTLNEVAGLFRGLDRFEARKKLWSDLEETGLAVKKEPHTLRVPRSQRGGEVIEPL 410 (809)
Q Consensus 331 P~h~~~D~~~~~~~~l~~~~~~~~~G~~~~~~g~~~G~~~~~a~~~i~~~L~~~g~~~~~~~~~~~~p~c~r~~~~i~~~ 410 (809)
+
T Consensus 137 -------------------------------------------------------------------------------~ 137 (312)
T cd00668 137 -------------------------------------------------------------------------------R 137 (312)
T ss_pred -------------------------------------------------------------------------------E
Confidence 1
Q ss_pred eccceeeeccHHHHHHHHHHhcCCceEecchhHHHHHHHHhcCCceeeeccccccceeeEEEEcCCcccEEEcCChhHHH
Q 003578 411 VSKQWFVTMEPLAEKALHAVEKGELTIMPERFEKIYNHWLSNIKDWCISRQLWWGHRIPVWYIVGKEEEYIVARNADEAL 490 (809)
Q Consensus 411 ~~~qwfl~~~~~~~~~~~~~~~~~~~~~P~~~~~~~~~~l~~l~Dw~ISRq~~WG~piP~~~~~~~~~~~~~~~~~~~~~ 490 (809)
.++|||++++++++++++++++++ +.|+..++++.+||++..|||||||++||+|+|
T Consensus 138 ~~~~~f~~~~~l~~~~~~~~~~~~--~~p~~~~~~~~~~l~~~~d~~isR~~~WG~~~P--------------------- 194 (312)
T cd00668 138 ITEQWFFDMPKFKEKLLKALRRGK--IVPEHVKNRMEAWLESLLDWAISRQRYWGTPLP--------------------- 194 (312)
T ss_pred eeeeEEEEcHHHHHHHHHHHhcCC--cCChHHHHHHHHHHhCCCCeEEeccCCCCCcCC---------------------
Confidence 245899999999999999998654 899999999999998877999999999999999
Q ss_pred HHHhhhcCCCccccccCCccceeecccCccceecCCCCCChhhhhhcCCCcEEEeeehhHHhHHHHHHHHHHHhcCCCCc
Q 003578 491 EKAHQKYGKNVEIYQDPDVLDTWFSSALWPFSTLGWPDVSADDFKKFYPTTMLETGHDILFFWVARMVMMGIEFTGSVPF 570 (809)
Q Consensus 491 ~~~~~~~~~~~~~~~~~dvld~Wfds~~~~~~~~~~~~~~~~~~~~~~p~d~~~~G~Di~~~w~~~~~~~~~~l~~~~Pf 570 (809)
.+|+||||||+++|++.++|+... ..|+++||.|++++|+||+++|+.++++++.++.+..|+
T Consensus 195 ----------------~~~i~~Wfds~~~~~~~~~~~~~~-~~~~~~~~~di~~~G~D~~~~h~~~~~~~~~~~~~~~~~ 257 (312)
T cd00668 195 ----------------EDVFDVWFDSGIGPLGSLGYPEEK-EWFKDSYPADWHLIGKDILRGWANFWITMLVALFGEIPP 257 (312)
T ss_pred ----------------cccccchhhccHHHHHHcCCCccc-hhhhhcCCceEEEEecchhhhHHHHHHHHHHHhcCCCCc
Confidence 269999999999999999988765 679999999999999999999999999999888877678
Q ss_pred eeEEEeeeEEccCCCcccccccCccChhhHHHhhCCchHHHHHhhCCC-CCcccc
Q 003578 571 SHVYLHGLIRDSQGRKMSKTLGNVIDPIDTIKEFGADALRFTISLGTA-GQDLSL 624 (809)
Q Consensus 571 ~~v~~hg~vld~~G~KMSKS~GN~I~p~dli~~ygaD~lR~~ll~~~~-~~d~~f 624 (809)
+++++||++++.+|+|||||+||+|+|.|++++||+|++||||++.++ ++|.+|
T Consensus 258 ~~~~~~g~~~~~~g~KmSKS~gn~v~~~d~~~~~~~da~R~~l~~~~~~~~d~~~ 312 (312)
T cd00668 258 KNLLVHGFVLDEGGQKMSKSKGNVIDPSDVVEKYGADALRYYLTSLAPYGDDIRL 312 (312)
T ss_pred ceeEECcEEEcCCCccccccCCCcCCHHHHHHHcCcHHHHHHHHhcCCccCCCCC
Confidence 999999999977779999999999999999999999999999999887 999876
No 43
>cd00814 MetRS_core catalytic core domain of methioninyl-tRNA synthetases. Methionine tRNA synthetase (MetRS) catalytic core domain. This class I enzyme aminoacylates the 2'-OH of the nucleotide at the 3' of the appropriate tRNA. MetRS, which consists of the core domain and an anti-codon binding domain, functions as a monomer. However, in some species the anti-codon binding domain is followed by an EMAP domain. In this case, MetRS functions as a homodimer. The core domain is based on the Rossman fold and is responsible for the ATP-dependent formation of the enzyme bound aminoacyl-adenylate. It contains the characteristic class I HIGH and KMSKS motifs, which are involved in ATP binding. As a result of a deletion event, MetRS has a significantly shorter core domain insertion than IleRS, ValRS, and LeuR. Consequently, the MetRS insertion lacks the editing function.
Probab=100.00 E-value=7.2e-63 Score=536.75 Aligned_cols=312 Identities=29% Similarity=0.470 Sum_probs=270.3
Q ss_pred CEEEeCCCCCCCCCCcchhhHHHHHHHHHHHHHHHCCCcccccCCCCCCCCchHHHHHHHHHHcCCCccccCHHHHHHHH
Q 003578 91 PFVISMPPPNVTGSLHMGHAMFVTLEDIMVRYHRMKGRPTLWLPGTDHAGIATQLVVEKMLAAEGIKRVELSRDEFTKRV 170 (809)
Q Consensus 91 ~f~i~~~pPy~nG~lHiGH~~~~~~~Di~~Ry~rm~G~~V~~~~G~D~~Gl~~~~~~e~~~~~~g~~~~~~~~~~f~~~~ 170 (809)
+|+|++|||||||.|||||+++++++|+++||+||+|++|.+++|+|+||++|+.+ ++++|++++
T Consensus 1 ~~~it~~~Py~ng~~HlGH~~~~~~~Dv~~R~~r~~G~~V~~~~g~Dd~g~~i~~~----a~~~g~~~~----------- 65 (319)
T cd00814 1 KVLITTALPYVNGVPHLGHLYGTVLADVFARYQRLRGYDVLFVTGTDEHGTKIEQK----AEEEGVTPQ----------- 65 (319)
T ss_pred CEEEEeCCCCCCCCcchhhHHHHHHHHHHHHHHHhCCCcccccCccCCCCcHHHHH----HHHcCCCHH-----------
Confidence 58999999999999999999999999999999999999999999999999996554 456788875
Q ss_pred HHHHHHHHHHHHHHHHHhccccc-CCCccccCChhhHHHHHHHHHHHHHcCceeecCcccccCCCCCcccCccccccccC
Q 003578 171 WEWKEKYGGTITSQIKRLGASCD-WTRERFTLDEQLSRAVVEAFIRLHEKGLIYQGSYMVNWSPNLQTAVSDLEVEYSEE 249 (809)
Q Consensus 171 ~~~~~~~~~~~~~~l~~lgi~~D-w~~~~~T~d~~~~~~v~~~f~~L~~~Gliy~~~~~v~w~p~~~t~lsd~Ev~~~~~ 249 (809)
++++.+++.+++++++||+++| |.+ |+++.|.+.++++|.+|+++|++|++...+.|||.|+++|+
T Consensus 66 -e~~~~~~~~~~~~l~~LgI~~D~~~~---tt~~~~~~~v~~i~~~L~ekG~iY~~~~~~~yc~~~~~~l~--------- 132 (319)
T cd00814 66 -ELCDKYHEIFKDLFKWLNISFDYFIR---TTSPRHKEIVQEFFKKLYENGYIYEGEYEGLYCVSCERFLP--------- 132 (319)
T ss_pred -HHHHHHHHHHHHHHHHcCCcCCCCee---CCCHHHHHHHHHHHHHHHHCCCEEeeeeeeeECCCCCcEee---------
Confidence 4467899999999999999888 444 88999999999999999999999999999999999877654
Q ss_pred CCceEEEEEEecCCCeeEEEEecCCccccCCcEEEECCCCchhhhcccCeeecCCCCCCeeeEEecCCccccCCCCceee
Q 003578 250 PGTLYYIKYRVAGRSDFLTIATTRPETLFGDVALAVNPQDEHYSQFIGMMAIVPMTYGRHVPIISDKYVDKEFGTGVLKI 329 (809)
Q Consensus 250 ~~~~~~~~f~~~~~~~~l~v~Tt~petl~~~~av~v~p~~~~y~~l~g~~~~~P~~~~~~vpi~~~~~V~~~~GTG~v~~ 329 (809)
T Consensus 133 -------------------------------------------------------------------------------- 132 (319)
T cd00814 133 -------------------------------------------------------------------------------- 132 (319)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred cCCCChhhHHHHHHhCCCceeecCCCCcccccccccCCCCHHHHHHHHHHHHHHCCCeeeeecccccCcccccCCCeeEE
Q 003578 330 SPGHDHNDYLLARKLGLPILNVMNKDGTLNEVAGLFRGLDRFEARKKLWSDLEETGLAVKKEPHTLRVPRSQRGGEVIEP 409 (809)
Q Consensus 330 ~P~h~~~D~~~~~~~~l~~~~~~~~~G~~~~~~g~~~G~~~~~a~~~i~~~L~~~g~~~~~~~~~~~~p~c~r~~~~i~~ 409 (809)
++
T Consensus 133 ------------------------------------------------------------------------------e~ 134 (319)
T cd00814 133 ------------------------------------------------------------------------------EW 134 (319)
T ss_pred ------------------------------------------------------------------------------EE
Confidence 23
Q ss_pred eeccceeeeccHHHHHHHHHHhcCCceEecchhHHHHHHHHhc-CCceeeeccc-cccceeeEEEEcCCcccEEEcCChh
Q 003578 410 LVSKQWFVTMEPLAEKALHAVEKGELTIMPERFEKIYNHWLSN-IKDWCISRQL-WWGHRIPVWYIVGKEEEYIVARNAD 487 (809)
Q Consensus 410 ~~~~qwfl~~~~~~~~~~~~~~~~~~~~~P~~~~~~~~~~l~~-l~Dw~ISRq~-~WG~piP~~~~~~~~~~~~~~~~~~ 487 (809)
+.++||||+++++++++++++++++..+.|+..++.+.+||++ ++|||||||. +||+|+|. +
T Consensus 135 ~~~~~~ff~l~~~~~~l~~~~~~~~~~~~p~~~~~~~~~~l~~~l~d~~isR~~~~WGipvp~-------~--------- 198 (319)
T cd00814 135 REEEHYFFRLSKFQDRLLEWLEKNPDFIWPENARNEVLSWLKEGLKDLSITRDLFDWGIPVPL-------D--------- 198 (319)
T ss_pred EeeeeEEEEhHHHHHHHHHHHHhCCccCCCHHHHHHHHHHHhCCCcccCCCccCcccCeeCCC-------C---------
Confidence 4567999999999999999998877678999999999999975 9999999999 99999993 1
Q ss_pred HHHHHHhhhcCCCccccccCCccceeecccCccceecCCCCCCh---hhhhhcCCCcEEEeeehhHHhHHHHHHHHHHHh
Q 003578 488 EALEKAHQKYGKNVEIYQDPDVLDTWFSSALWPFSTLGWPDVSA---DDFKKFYPTTMLETGHDILFFWVARMVMMGIEF 564 (809)
Q Consensus 488 ~~~~~~~~~~~~~~~~~~~~dvld~Wfds~~~~~~~~~~~~~~~---~~~~~~~p~d~~~~G~Di~~~w~~~~~~~~~~l 564 (809)
+.+|+||||||.++|++..+++.... ..|...+|.+++++|+||++||.....++-.++
T Consensus 199 ------------------~~~~~yvWfda~~~y~~~~~~~~~~~~~~~~~~~~~~~~v~~~G~D~~~fh~~~~pa~l~~~ 260 (319)
T cd00814 199 ------------------PGKVIYVWFDALIGYISATGYYNEEWGNSWWWKDGWPELVHFIGKDIIRFHAIYWPAMLLGA 260 (319)
T ss_pred ------------------CCcEEEEehhhHHHHHHHcccccccccchhhhhcCCCceEEEEeechhhhhHHHHHHHHHhC
Confidence 34799999999999999888775442 146677899999999999986433322222222
Q ss_pred cCCCCceeEEEeeeEEccCCCcccccccCccChhhHHHhhCCchHHHHHhhCCC-CCcccc
Q 003578 565 TGSVPFSHVYLHGLIRDSQGRKMSKTLGNVIDPIDTIKEFGADALRFTISLGTA-GQDLSL 624 (809)
Q Consensus 565 ~~~~Pf~~v~~hg~vld~~G~KMSKS~GN~I~p~dli~~ygaD~lR~~ll~~~~-~~d~~f 624 (809)
+..|++++++||+++ .+|+|||||+||+|+|.+++++||+|++||||++..+ ++|.+|
T Consensus 261 -~~~~~~~~~~~~~~~-~~g~kmSkS~gn~i~~~~~l~~~~~d~~R~~l~~~~~~~~d~~f 319 (319)
T cd00814 261 -GLPLPTRIVAHGYLT-VEGKKMSKSRGNVVDPDDLLERYGADALRYYLLRERPEGKDSDF 319 (319)
T ss_pred -CCCCCcEeeeeeeEE-ECCeeecccCCcccCHHHHHHHcCchHHHHHHHhcCCCCCCCCC
Confidence 234569999999997 7899999999999999999999999999999999988 999887
No 44
>KOG1247 consensus Methionyl-tRNA synthetase [Translation, ribosomal structure and biogenesis]
Probab=100.00 E-value=1.6e-60 Score=493.96 Aligned_cols=495 Identities=19% Similarity=0.284 Sum_probs=398.7
Q ss_pred CCCCEEEeCCCCCCCCCCcchhhHHH-HHHHHHHHHHHHCCCcccccCCCCCCCCchHHHHHHHHHHcCCCccccCHHHH
Q 003578 88 GSDPFVISMPPPNVTGSLHMGHAMFV-TLEDIMVRYHRMKGRPTLWLPGTDHAGIATQLVVEKMLAAEGIKRVELSRDEF 166 (809)
Q Consensus 88 ~~~~f~i~~~pPy~nG~lHiGH~~~~-~~~Di~~Ry~rm~G~~V~~~~G~D~~Gl~~~~~~e~~~~~~g~~~~~~~~~~f 166 (809)
++..-+|+.+.||+|..+|+|++.+. ..+||+|||.+.+|++.++++|+|+.|.+++. .+.++|.+|++++
T Consensus 12 n~rnilitsalpyvnnvphlgNIIg~vlsAdV~Aryc~~r~~~~~yicGTDEYgtatet----kaleeg~tP~elc---- 83 (567)
T KOG1247|consen 12 NERNILITSALPYVNNVPHLGNIIGSVLSADVFARYCPLRGPNTLYICGTDEYGTATET----KALEEGLTPQELC---- 83 (567)
T ss_pred CccceeeecccceecccccccceeeEEeehhhhcccccCCCCceEEeccccccchhhHH----HHHHccCCHHHHH----
Confidence 45678999999999999999999985 55999999999999999999999999999644 4568899998763
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhccccc-CCCccccCChhhHHHHHHHHHHHHHcCceeecCcccccCCCCCcccCccccc
Q 003578 167 TKRVWEWKEKYGGTITSQIKRLGASCD-WTRERFTLDEQLSRAVVEAFIRLHEKGLIYQGSYMVNWSPNLQTAVSDLEVE 245 (809)
Q Consensus 167 ~~~~~~~~~~~~~~~~~~l~~lgi~~D-w~~~~~T~d~~~~~~v~~~f~~L~~~Gliy~~~~~v~w~p~~~t~lsd~Ev~ 245 (809)
++|+..++.....++|++| |.| |+.+...+.+|.+|.+|+++|+.-..+..+.+|..|++.|+|-.|
T Consensus 84 --------dKyh~ihk~vy~Wf~IdfD~fgr---tTT~~qT~i~Q~iF~kl~~ng~~se~tv~qLyC~vc~~fladr~v- 151 (567)
T KOG1247|consen 84 --------DKYHGIHKVVYDWFKIDFDEFGR---TTTKTQTEICQDIFSKLYDNGYLSEQTVKQLYCEVCDTFLADRFV- 151 (567)
T ss_pred --------HhcchhHHHHHHhhcccccccCc---ccCcchhHHHHHHhhchhhcCCcccceeeeEEehhhcccccchhh-
Confidence 6899999999999999999 777 888999999999999999999999999999999999999888333
Q ss_pred cccCCCceEEEEEEecCCCeeEEEEecCCccccCCcEEEECCCCchhhhcccCeeecCCCCCCeeeEEecCCccccCCCC
Q 003578 246 YSEEPGTLYYIKYRVAGRSDFLTIATTRPETLFGDVALAVNPQDEHYSQFIGMMAIVPMTYGRHVPIISDKYVDKEFGTG 325 (809)
Q Consensus 246 ~~~~~~~~~~~~f~~~~~~~~l~v~Tt~petl~~~~av~v~p~~~~y~~l~g~~~~~P~~~~~~vpi~~~~~V~~~~GTG 325 (809)
. |+
T Consensus 152 -------------------------------------------------------------------------e---g~- 154 (567)
T KOG1247|consen 152 -------------------------------------------------------------------------E---GK- 154 (567)
T ss_pred -------------------------------------------------------------------------h---cc-
Confidence 2 32
Q ss_pred ceeecCCCChhhHHHHHHhCCCceeecCCCCcccccccccCCCCHHHHHHHHHHHHHHCCCeeeeecccccCcccccCCC
Q 003578 326 VLKISPGHDHNDYLLARKLGLPILNVMNKDGTLNEVAGLFRGLDRFEARKKLWSDLEETGLAVKKEPHTLRVPRSQRGGE 405 (809)
Q Consensus 326 ~v~~~P~h~~~D~~~~~~~~l~~~~~~~~~G~~~~~~g~~~G~~~~~a~~~i~~~L~~~g~~~~~~~~~~~~p~c~r~~~ 405 (809)
||.|+.+ +.+|.+|++||.. ....++..|.|..|..
T Consensus 155 ----cp~C~yd----------------~ARGDqcd~cG~l------------------------~N~~el~~pkc~ic~~ 190 (567)
T KOG1247|consen 155 ----CPFCGYD----------------DARGDQCDKCGKL------------------------VNAAELKIPKCKICQA 190 (567)
T ss_pred ----CCCCCCc----------------cccchhhhhhhhh------------------------cCHHHhcCcchheecc
Confidence 5655544 5689999999975 4566788999999999
Q ss_pred eeEEeeccceeeeccHHHHHHHHHHhcCC--ceEecchhHHHHHHHH-hcCCceeeeccccccceeeEEEEcCCcccEEE
Q 003578 406 VIEPLVSKQWFVTMEPLAEKALHAVEKGE--LTIMPERFEKIYNHWL-SNIKDWCISRQLWWGHRIPVWYIVGKEEEYIV 482 (809)
Q Consensus 406 ~i~~~~~~qwfl~~~~~~~~~~~~~~~~~--~~~~P~~~~~~~~~~l-~~l~Dw~ISRq~~WG~piP~~~~~~~~~~~~~ 482 (809)
..+++.+.+.||++++++.++.+++++.- -.| ....+.+..+|| ++++++||||...||+|+|. ++|
T Consensus 191 ~p~~~~t~h~Fl~L~kl~~~lee~~~~~~~~~~W-S~Na~~it~sWlk~gl~pRCiTRDLkWGtpVPl-------e~f-- 260 (567)
T KOG1247|consen 191 GPVVRQTQHLFLSLDKLEPRLEEWLRRTLVEGDW-SQNAQNITRSWLKDGLKPRCITRDLKWGTPVPL-------EKF-- 260 (567)
T ss_pred CCeeeeeeEEEEEhHHhHHHHHHHHHhccccCCC-ccchHHHHHHHHHccccccccccccccCCCcCh-------hhh--
Confidence 99999999999999999999999997532 234 447789999999 68999999999999999994 333
Q ss_pred cCChhHHHHHHhhhcCCCccccccCCccceeecccCccceecCCCCCChhhhhhcC--C--Cc-EEEeeehhHHhHHHHH
Q 003578 483 ARNADEALEKAHQKYGKNVEIYQDPDVLDTWFSSALWPFSTLGWPDVSADDFKKFY--P--TT-MLETGHDILFFWVARM 557 (809)
Q Consensus 483 ~~~~~~~~~~~~~~~~~~~~~~~~~dvld~Wfds~~~~~~~~~~~~~~~~~~~~~~--p--~d-~~~~G~Di~~~w~~~~ 557 (809)
+..|+|||||+.+.|++.... .. ++|++|| | ++ +.+.|+|++.||-..+
T Consensus 261 -----------------------k~KVfYVWFDA~IGYlsit~~--yt-~ew~kWwknpE~v~LyqFmgKDNVpFHtviF 314 (567)
T KOG1247|consen 261 -----------------------KDKVFYVWFDAPIGYLSITKN--YT-DEWEKWWKNPENVELYQFMGKDNVPFHTVIF 314 (567)
T ss_pred -----------------------cccEEEEEEcCcceEEEeehh--hh-HHHHHHhcCHhhhhHHHHhccCCCcceeeec
Confidence 456999999999999886531 22 7899999 3 33 3489999998865444
Q ss_pred HHHHHHhcCCCCce-eEEEeeeEEccCCCcccccccCccChhhHHHh-hCCchHHHHHhhCCC-CCcccccHHHHHH--H
Q 003578 558 VMMGIEFTGSVPFS-HVYLHGLIRDSQGRKMSKTLGNVIDPIDTIKE-FGADALRFTISLGTA-GQDLSLSIERLTA--N 632 (809)
Q Consensus 558 ~~~~~~l~~~~Pf~-~v~~hg~vld~~G~KMSKS~GN~I~p~dli~~-ygaD~lR~~ll~~~~-~~d~~fs~~~l~~--~ 632 (809)
-...++...+.+.- ++-...++ +.+..|+|||+|.+|..+++.+. .+++++||||++..| .+|..|||+.+.. +
T Consensus 315 P~s~lgt~en~t~v~~l~aTeYL-nyE~gKFSKSrgvGvFG~~aqd~gi~~~vWRyYLl~~RPEssDs~Fsw~df~~k~n 393 (567)
T KOG1247|consen 315 PCSQLGTEENYTVVHHLSATEYL-NYEDGKFSKSRGVGVFGNDAQDTGIPASVWRYYLLYIRPESSDSAFSWDDFVLKVN 393 (567)
T ss_pred chhhhcCCCCchhheeechhhhh-ccccCcccccccccccccccccCCCCHHHHHHHHhhccCcccCCcCcHHHHHHHhh
Confidence 33333333333432 33334444 56777999999999999999886 999999999999999 9999999999976 8
Q ss_pred HHHHHHHHHHHHHHHHhCCCCCchhhHHHHhhhccchhhhhcCCCchhHHHHHHHHHHHHHHHHHhhcCChHHHHHHHHH
Q 003578 633 KAFTNKLWNAGKFILQNLPSQNDISRWEILLAYKFDEEECLCKAPLPECWVVSKLHMLIDTVTASYDKYFFGDVGRETYD 712 (809)
Q Consensus 633 ~~~~~kl~N~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~~d~~il~~l~~~~~~v~~a~e~~~f~~a~~~i~~ 712 (809)
+++++.|+|++++++..+... +..-.+...+...|+.+++.++++..+..++||.-++++|++.+|+
T Consensus 394 seLl~NLGNFvNR~l~fv~~~-------------~~g~Vp~~~~~~~~~~~~~dv~~~~~~y~~~me~vklr~~l~~~m~ 460 (567)
T KOG1247|consen 394 SELLNNLGNFVNRVLKFVAAK-------------YNGVVPEMELTSGDKKLLEDVNELLAKYVAAMEKVKLREALKTAME 460 (567)
T ss_pred HHHHHHHHHHHHHHHHHHHHh-------------hCCcccceeecCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 999999999998887654211 0001111234445788999999999999999999999999999999
Q ss_pred HHHHhhHHHHHHHhhhhhhcCCCcHHHHHHHHHHHHHHHHHHHHhccchhHHHHHHHHHhccC
Q 003578 713 FFWSDFADWYIEASKARLYRSEYDSDAIIAQAVLLYIFENILKLLHPFMPFVTEELWQSLRKR 775 (809)
Q Consensus 713 f~~~~~~n~Yi~~~k~~l~~~~~~~~~~~~~~~l~~vl~~l~~lL~P~~P~~aeeiw~~L~~~ 775 (809)
.. ...|.|++.++.+..-..+..+......+...++-.+..||+||||.++.+|..+|+..
T Consensus 461 is--~~GNqylQ~~~~~k~~~~~r~r~~~vi~~a~nii~lvs~ll~P~mP~~s~~I~kqlnlp 521 (567)
T KOG1247|consen 461 IS--RRGNQYLQENTDNKLYEESRQRAGTVIGLAANIIYLVSVLLYPYMPTTSAEILKQLNLP 521 (567)
T ss_pred HH--HhhhHHHhcccccchhhhcccccceeeehhhHHHHHHHHHhccccccchHHHHHHhCCc
Confidence 84 78999999988543322121122233445566677788999999999999999999865
No 45
>cd00812 LeuRS_core catalytic core domain of leucyl-tRNA synthetases. Leucyl tRNA synthetase (LeuRS) catalytic core domain. This class I enzyme is a monomer which aminoacylates the 2'-OH of the nucleotide at the 3' of the appropriate tRNA. The core domain is based on the Rossman fold and is responsible for the ATP-dependent formation of the enzyme bound aminoacyl-adenylate. It contains the characteristic class I HIGH and KMSKS motifs, which are involved in ATP binding. In Aquifex aeolicus, the gene encoding LeuRS is split in two, just before the KMSKS motif. Consequently, LeuRS is a heterodimer, which likely superimposes with the LeuRS monomer found in most other organisms. LeuRS has an insertion in the core domain, which is subject to both deletions and rearrangements and thus differs between prokaryotic LeuRS and archaeal/eukaryotic LeuRS. This editing region hydrolyzes mischarged cognate tRNAs and thus prevents the incorporation of chemically similar amino acids.
Probab=100.00 E-value=3e-58 Score=498.71 Aligned_cols=297 Identities=30% Similarity=0.488 Sum_probs=254.3
Q ss_pred CEEEeCCCCCCCCCCcchhhHHHHHHHHHHHHHHHCCCcccccCCCCCCCCchHHHHHHHHHHcCCCccccCHHHHHHHH
Q 003578 91 PFVISMPPPNVTGSLHMGHAMFVTLEDIMVRYHRMKGRPTLWLPGTDHAGIATQLVVEKMLAAEGIKRVELSRDEFTKRV 170 (809)
Q Consensus 91 ~f~i~~~pPy~nG~lHiGH~~~~~~~Di~~Ry~rm~G~~V~~~~G~D~~Gl~~~~~~e~~~~~~g~~~~~~~~~~f~~~~ 170 (809)
+|+|++|||||||.+||||+++++++|+++||+||+|++|.+++|+|+||+|++.. +++.|.++
T Consensus 1 k~~it~~~Py~ng~~HiGH~~~~v~~Dv~~R~lr~~G~~V~~v~g~Dd~g~~i~~~----a~~~g~~~------------ 64 (314)
T cd00812 1 KFYILVMFPYPSGALHVGHVRTYTIGDIIARYKRMQGYNVLFPMGFDAFGLPAENA----AIKIGRDP------------ 64 (314)
T ss_pred CeEEecCCCCCCCCccccchHHHHHHHHHHHHHHHcCCCcCCCCCcCCCCCHHHHH----HHHcCCCH------------
Confidence 58999999999999999999999999999999999999999999999999996544 45567754
Q ss_pred HHHHHHHHHHHHHHHHHhcccccCCCccccCChhhHHHHHHHHHHHHHcCceeecCcccccCCCCCcccCccccccccCC
Q 003578 171 WEWKEKYGGTITSQIKRLGASCDWTRERFTLDEQLSRAVVEAFIRLHEKGLIYQGSYMVNWSPNLQTAVSDLEVEYSEEP 250 (809)
Q Consensus 171 ~~~~~~~~~~~~~~l~~lgi~~Dw~~~~~T~d~~~~~~v~~~f~~L~~~Gliy~~~~~v~w~p~~~t~lsd~Ev~~~~~~ 250 (809)
.+|++++.+.+++++++||+++||.+.+.|++|+|.+.|+++|.+|+++|+||++..+|+||
T Consensus 65 ~e~~~~~~~~~~~~~~~lgi~~d~~~~~~t~~~~~~~~v~~~f~~L~~~G~iy~~~~~v~~~------------------ 126 (314)
T cd00812 65 EDWTEYNIKKMKEQLKRMGFSYDWRREFTTCDPEYYKFTQWLFLKLYEKGLAYKKEAPVNWC------------------ 126 (314)
T ss_pred HHHHHHHHHHHHHHHHHhccceecccccccCCHHHHHHHHHHHHHHHHCCCEEecCceeeee------------------
Confidence 46788999999999999999999988888999999999999999999999999999999885
Q ss_pred CceEEEEEEecCCCeeEEEEecCCccccCCcEEEECCCCchhhhcccCeeecCCCCCCeeeEEecCCccccCCCCceeec
Q 003578 251 GTLYYIKYRVAGRSDFLTIATTRPETLFGDVALAVNPQDEHYSQFIGMMAIVPMTYGRHVPIISDKYVDKEFGTGVLKIS 330 (809)
Q Consensus 251 ~~~~~~~f~~~~~~~~l~v~Tt~petl~~~~av~v~p~~~~y~~l~g~~~~~P~~~~~~vpi~~~~~V~~~~GTG~v~~~ 330 (809)
T Consensus 127 -------------------------------------------------------------------------------- 126 (314)
T cd00812 127 -------------------------------------------------------------------------------- 126 (314)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred CCCChhhHHHHHHhCCCceeecCCCCcccccccccCCCCHHHHHHHHHHHHHHCCCeeeeecccccCcccccCCCeeEEe
Q 003578 331 PGHDHNDYLLARKLGLPILNVMNKDGTLNEVAGLFRGLDRFEARKKLWSDLEETGLAVKKEPHTLRVPRSQRGGEVIEPL 410 (809)
Q Consensus 331 P~h~~~D~~~~~~~~l~~~~~~~~~G~~~~~~g~~~G~~~~~a~~~i~~~L~~~g~~~~~~~~~~~~p~c~r~~~~i~~~ 410 (809)
+
T Consensus 127 -------------------------------------------------------------------------------~ 127 (314)
T cd00812 127 -------------------------------------------------------------------------------K 127 (314)
T ss_pred -------------------------------------------------------------------------------C
Confidence 1
Q ss_pred eccceeeec--cHHHHHHHHHHhcCCceEecchhHHHHHHHHhcCCceeeeccccccceeeEEEEcCCcccEEEcCChhH
Q 003578 411 VSKQWFVTM--EPLAEKALHAVEKGELTIMPERFEKIYNHWLSNIKDWCISRQLWWGHRIPVWYIVGKEEEYIVARNADE 488 (809)
Q Consensus 411 ~~~qwfl~~--~~~~~~~~~~~~~~~~~~~P~~~~~~~~~~l~~l~Dw~ISRq~~WG~piP~~~~~~~~~~~~~~~~~~~ 488 (809)
.++||||++ +++++++++++++. .+.|+..++.+.+||+ ||||+.||+|+|+
T Consensus 128 ~~~~~f~~l~~~~~~~~l~~~l~~~--~~~p~~~~~~~~~~l~------isR~~~wGipvP~------------------ 181 (314)
T cd00812 128 LLDQWFLKYSETEWKEKLLKDLEKL--DGWPEEVRAMQENWIG------CSRQRYWGTPIPW------------------ 181 (314)
T ss_pred ccceEEEEcCcHHHHHHHHHHHHhc--CcCCHHHHHHHHHHhe------eeeecCCcCCcCc------------------
Confidence 246999999 99999999999864 4699999999999997 9999999999993
Q ss_pred HHHHHhhhcCCCccccccCCccceeecccC---ccceecCCCCC-------ChhhhhhcCCCcEEEeeehhHHhHHHHHH
Q 003578 489 ALEKAHQKYGKNVEIYQDPDVLDTWFSSAL---WPFSTLGWPDV-------SADDFKKFYPTTMLETGHDILFFWVARMV 558 (809)
Q Consensus 489 ~~~~~~~~~~~~~~~~~~~dvld~Wfds~~---~~~~~~~~~~~-------~~~~~~~~~p~d~~~~G~Di~~~w~~~~~ 558 (809)
.+|+|+||||.+ .|.+....... .+++|++|||.|++++|+||+++|....+
T Consensus 182 ------------------~~~i~~w~ds~~y~~~y~~~~~~~~~~~~~~~~~~~~~~~w~p~di~v~G~D~i~~h~~~~~ 243 (314)
T cd00812 182 ------------------TDTMESLSDSTWYYARYTDAHNLEQPYEGDLEFDREEFEYWYPVDIYIGGKEHAPNHLLYSR 243 (314)
T ss_pred ------------------ccccccccccHHHHHHHHhcccccCcchhhhhhhHHHHHHhCCCeeeecchhHHHHHHHHHH
Confidence 358999999986 34333322111 23569999999999999999888754333
Q ss_pred HHHHHhc--C---CCCceeEEEeeeEEccCCCcccccccCccChhhHHHhhCCchHHHHHhhCCCCCcccccH
Q 003578 559 MMGIEFT--G---SVPFSHVYLHGLIRDSQGRKMSKTLGNVIDPIDTIKEFGADALRFTISLGTAGQDLSLSI 626 (809)
Q Consensus 559 ~~~~~l~--~---~~Pf~~v~~hg~vld~~G~KMSKS~GN~I~p~dli~~ygaD~lR~~ll~~~~~~d~~fs~ 626 (809)
+....+. + ..|++++.+||+++ .+|+|||||+||+|+|+|++++||+|++||||++.++ .|.+|++
T Consensus 244 ~~~~~l~~~g~~~~~~~~~~~~~g~v~-~~g~KmSkS~Gn~v~~~dll~~~~~Da~R~~ll~~~~-~~~~f~~ 314 (314)
T cd00812 244 FNHKALFDEGLVTDEPPKGLIVQGMVL-LEGEKMSKSKGNVVTPDEAIKKYGADAARLYILFAAP-PDADFDW 314 (314)
T ss_pred HHHHHHcCcccccccCcHHheecceEe-cCccccCCcCCCCCCHHHHHHHhCcHHHHHHHHhcCC-cCCCCCC
Confidence 3333222 2 13558999999997 7999999999999999999999999999999999888 8888874
No 46
>PRK00260 cysS cysteinyl-tRNA synthetase; Validated
Probab=100.00 E-value=5.1e-46 Score=421.91 Aligned_cols=361 Identities=22% Similarity=0.287 Sum_probs=276.2
Q ss_pred CCCCCCCCCCCCCEEEeCCCCCCCCCCcchhhHHHHHHHHHHHHHHHCCCcccccCCCCCCCCchHHHHHHHHHHcCCCc
Q 003578 79 GYFKPNFERGSDPFVISMPPPNVTGSLHMGHAMFVTLEDIMVRYHRMKGRPTLWLPGTDHAGIATQLVVEKMLAAEGIKR 158 (809)
Q Consensus 79 ~~f~~~~~~~~~~f~i~~~pPy~nG~lHiGH~~~~~~~Di~~Ry~rm~G~~V~~~~G~D~~Gl~~~~~~e~~~~~~g~~~ 158 (809)
..|++... ++.+++++ + |+|+|.+||||+++++..|+++||+||+||+|+|++|+|++|.+| .+.+++.|.++
T Consensus 14 ~~f~p~~~-~~v~~yvc-g-Ptvy~~~HiGHar~~v~~Dvl~R~lr~~G~~V~~v~~~tD~ddki----~~~A~~~g~~~ 86 (463)
T PRK00260 14 EEFKPLEP-GKVKMYVC-G-PTVYDYAHIGHARSFVVFDVLRRYLRYLGYKVTYVRNITDIDDKI----IKRANEEGESI 86 (463)
T ss_pred eecccCCC-CcceEEEe-C-CccCCCcccccchhHHHHHHHHHHHHhcCCceEEeecCCCCcHHH----HHHHHHcCCCH
Confidence 34555432 23344444 4 688899999999999999999999999999999999999999884 44566788876
Q ss_pred cccCHHHHHHHHHHHHHHHHHHHHHHHHHhcc-cccCCCccccCChhhHHHHHHHHHHHHHcCceeecCcccccCCCCCc
Q 003578 159 VELSRDEFTKRVWEWKEKYGGTITSQIKRLGA-SCDWTRERFTLDEQLSRAVVEAFIRLHEKGLIYQGSYMVNWSPNLQT 237 (809)
Q Consensus 159 ~~~~~~~f~~~~~~~~~~~~~~~~~~l~~lgi-~~Dw~~~~~T~d~~~~~~v~~~f~~L~~~Gliy~~~~~v~w~p~~~t 237 (809)
. ++++++++.+.++|++||+ +.||... .| +|...+++++.+|+++|++|++..+|+||+..-
T Consensus 87 ~------------e~~~~~~~~f~~~~~~Lgi~~~d~~~r-~t---~~~~~~~~~i~~L~~kG~aY~~~~~Vyfdv~~~- 149 (463)
T PRK00260 87 K------------ELTERYIAAFHEDMDALNVLPPDIEPR-AT---EHIPEIIELIERLIDKGHAYEADGDVYFDVRKF- 149 (463)
T ss_pred H------------HHHHHHHHHHHHHHHHcCCCCCCcccc-cc---ccHHHHHHHHHHHHHCCCEEEecCeEEEecccc-
Confidence 5 4567899999999999999 5575432 22 588889999999999999999999999997531
Q ss_pred ccCccccccccCCCceEEEEEEecCCCeeEEEEecCCccccCCcEEEECCCCchhhhcccCeeecCCCCCCeeeEEecCC
Q 003578 238 AVSDLEVEYSEEPGTLYYIKYRVAGRSDFLTIATTRPETLFGDVALAVNPQDEHYSQFIGMMAIVPMTYGRHVPIISDKY 317 (809)
Q Consensus 238 ~lsd~Ev~~~~~~~~~~~~~f~~~~~~~~l~v~Tt~petl~~~~av~v~p~~~~y~~l~g~~~~~P~~~~~~vpi~~~~~ 317 (809)
+.|++|.|.....-. .|..
T Consensus 150 ----------------------------------------------------~~yg~ls~~~~~~~~-~~~~-------- 168 (463)
T PRK00260 150 ----------------------------------------------------PDYGKLSGRNLDELQ-AGAR-------- 168 (463)
T ss_pred ----------------------------------------------------cccccCCCCCHHHHh-ccCc--------
Confidence 123333332211100 0111
Q ss_pred ccccCCCCceeecCCCChhhHHHHHHhCCCceeecCCCCcccccccccCCCCHHHHHHHHHHHHHHCCCeeeeecccccC
Q 003578 318 VDKEFGTGVLKISPGHDHNDYLLARKLGLPILNVMNKDGTLNEVAGLFRGLDRFEARKKLWSDLEETGLAVKKEPHTLRV 397 (809)
Q Consensus 318 V~~~~GTG~v~~~P~h~~~D~~~~~~~~l~~~~~~~~~G~~~~~~g~~~G~~~~~a~~~i~~~L~~~g~~~~~~~~~~~~ 397 (809)
|+.+ .-.++|.||.+||+..
T Consensus 169 ~~~~--------~~K~~~~DF~Lwk~~~---------------------------------------------------- 188 (463)
T PRK00260 169 VEVA--------EEKRDPLDFALWKAAK---------------------------------------------------- 188 (463)
T ss_pred CCcc--------cCCCCccccceecCCC----------------------------------------------------
Confidence 1110 1146777888776421
Q ss_pred cccccCCCeeEEeeccceeeeccHHHHHHHHHHhcCCceEecchhHHHHHHHHhcCCceeeeccccccceeeEEEEcCCc
Q 003578 398 PRSQRGGEVIEPLVSKQWFVTMEPLAEKALHAVEKGELTIMPERFEKIYNHWLSNIKDWCISRQLWWGHRIPVWYIVGKE 477 (809)
Q Consensus 398 p~c~r~~~~i~~~~~~qwfl~~~~~~~~~~~~~~~~~~~~~P~~~~~~~~~~l~~l~Dw~ISRq~~WG~piP~~~~~~~~ 477 (809)
+|+ . -| ...||.--|-|++++-
T Consensus 189 -----~~~-----------------------------~-------------------~w----~s~~g~grpgWhiecs- 210 (463)
T PRK00260 189 -----PGE-----------------------------P-------------------SW----ESPWGKGRPGWHIECS- 210 (463)
T ss_pred -----CCC-----------------------------C-------------------CC----CCCCCCCCCChhHHHH-
Confidence 111 0 01 2358888899998650
Q ss_pred ccEEEcCChhHHHHHHhhhcCCCccccccCCccceeecccCccceecCCCCCChhhhhhcCCCcEEEeeehhHHhHHHHH
Q 003578 478 EEYIVARNADEALEKAHQKYGKNVEIYQDPDVLDTWFSSALWPFSTLGWPDVSADDFKKFYPTTMLETGHDILFFWVARM 557 (809)
Q Consensus 478 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dvld~Wfds~~~~~~~~~~~~~~~~~~~~~~p~d~~~~G~Di~~~w~~~~ 557 (809)
. +-...+| -|.|+|.+|.|++++|+.++
T Consensus 211 ---------------------------------------a-m~~~~lg------------~~~Dih~gG~DlifpHh~ne 238 (463)
T PRK00260 211 ---------------------------------------A-MSTKYLG------------ETFDIHGGGADLIFPHHENE 238 (463)
T ss_pred ---------------------------------------H-HHHHhcC------------CCcceecCccccCCCchHhH
Confidence 0 0000011 26899999999999999999
Q ss_pred HHHHHHhcCCCCceeEEEeeeEEccCCCcccccccCccChhhHHHhhCCchHHHHHhhCCCCCcccccHHHHHHHHHHHH
Q 003578 558 VMMGIEFTGSVPFSHVYLHGLIRDSQGRKMSKTLGNVIDPIDTIKEFGADALRFTISLGTAGQDLSLSIERLTANKAFTN 637 (809)
Q Consensus 558 ~~~~~~l~~~~Pf~~v~~hg~vld~~G~KMSKS~GN~I~p~dli~~ygaD~lR~~ll~~~~~~d~~fs~~~l~~~~~~~~ 637 (809)
++.+.+++| .||.++|+|+.+++.+|+|||||+||+|+|.|++++||+|++||++++++++++++|+++.+...++.++
T Consensus 239 iaqs~a~~g-~p~~~~w~H~g~v~~~G~KMSKS~GN~i~~~dll~~~~~d~lR~~ll~~~~~~~~~fs~~~l~~a~~~~~ 317 (463)
T PRK00260 239 IAQSEAATG-KPFANYWMHNGFVTVNGEKMSKSLGNFFTIRDLLKKYDPEVLRFFLLSAHYRSPLNFSEEALEQAKKALE 317 (463)
T ss_pred HHHHHHhcC-CCcceEEEEccEEccCCCcccCcCCCCCCHHHHHHHcCchHhHHHHHhCCCCCCCccCHHHHHHHHHHHH
Confidence 999999888 6999999999998999999999999999999999999999999999998889999999999999999999
Q ss_pred HHHHHHHHHHHhCCCCCchhhHHHHhhhccchhhhhcCCCchhHHHHHHHHHHHHHHHHHh-hcCChHHHHHHHHHHHHH
Q 003578 638 KLWNAGKFILQNLPSQNDISRWEILLAYKFDEEECLCKAPLPECWVVSKLHMLIDTVTASY-DKYFFGDVGRETYDFFWS 716 (809)
Q Consensus 638 kl~N~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~~d~~il~~l~~~~~~v~~a~-e~~~f~~a~~~i~~f~~~ 716 (809)
++||+++++... ..|.|+.+.++.+++++.++| ++++++.|+..+++|+
T Consensus 318 rl~~~~~~~~~~----------------------------~~d~~~~~~l~~~~~~~~~al~ddln~~~Al~~l~~lv-- 367 (463)
T PRK00260 318 RLYNALAETALG----------------------------EDDEALLAELEEFKERFIEAMDDDFNTPEALAVLFELA-- 367 (463)
T ss_pred HHHHHHHHhhhc----------------------------cchhhHHHHHHHHHHHHHHHHHhcccHHHHHHHHHHHH--
Confidence 999998876410 135678889999999999999 4999999999999997
Q ss_pred hhHHHHHHH
Q 003578 717 DFADWYIEA 725 (809)
Q Consensus 717 ~~~n~Yi~~ 725 (809)
...|.|++.
T Consensus 368 ~~~n~~~~~ 376 (463)
T PRK00260 368 REINRALET 376 (463)
T ss_pred HHHHHHhhc
Confidence 346777653
No 47
>TIGR00435 cysS cysteinyl-tRNA synthetase. This model finds the cysteinyl-tRNA synthetase from most but not from all species. The enzyme from one archaeal species, Archaeoglobus fulgidus, is found but the equivalent enzymes from some other Archaea, including Methanococcus jannaschii, are not found, although biochemical evidence suggests that tRNA(Cys) in these species are charged directly with Cys rather than through a misacylation and correction pathway as for tRNA(Gln).
Probab=100.00 E-value=9.2e-43 Score=394.10 Aligned_cols=358 Identities=20% Similarity=0.227 Sum_probs=261.9
Q ss_pred CCCCCCCCCCCCCEEEeCCCCCCCCCCcchhhHHHHHHHHHHHHHHHCCCcccccCCCCCCCCchHHHHHHHHHHcCCCc
Q 003578 79 GYFKPNFERGSDPFVISMPPPNVTGSLHMGHAMFVTLEDIMVRYHRMKGRPTLWLPGTDHAGIATQLVVEKMLAAEGIKR 158 (809)
Q Consensus 79 ~~f~~~~~~~~~~f~i~~~pPy~nG~lHiGH~~~~~~~Di~~Ry~rm~G~~V~~~~G~D~~Gl~~~~~~e~~~~~~g~~~ 158 (809)
..|.+... ++-++++ ++ |||+|.+||||+++++..|+++||+|++||+|.|++|+|+||.+| .+.++++|+++
T Consensus 12 e~f~p~~~-~~v~~yv-cg-ptvy~~~HiGhar~~v~~Dvl~R~lr~~G~~V~~v~n~tD~ddkI----i~~A~~~g~~~ 84 (465)
T TIGR00435 12 EEFEPLVQ-GKVKMYV-CG-PTVYDYCHIGHARTAIVFDVLRRYLRYLGYKVQYVQNITDIDDKI----IKRARENGESV 84 (465)
T ss_pred eccccCCC-CcceEEE-ec-CccCCCcccccchHHHHHHHHHHHHHHcCCcEEEEEeeCCccHHH----HHHHHHcCCCH
Confidence 34555433 2344555 44 599999999999999999999999999999999999999999984 45567889988
Q ss_pred cccCHHHHHHHHHHHHHHHHHHHHHHHHHhcccccCCCccccCChhhHHHHHHHHHHHHHcCceeecC-cccccCCCCCc
Q 003578 159 VELSRDEFTKRVWEWKEKYGGTITSQIKRLGASCDWTRERFTLDEQLSRAVVEAFIRLHEKGLIYQGS-YMVNWSPNLQT 237 (809)
Q Consensus 159 ~~~~~~~f~~~~~~~~~~~~~~~~~~l~~lgi~~Dw~~~~~T~d~~~~~~v~~~f~~L~~~Gliy~~~-~~v~w~p~~~t 237 (809)
.+ +++.+.+.+.+++++|||++|+-.+..| .|...+++++.+|.++|++|... ..|+||+.|..
T Consensus 85 ~e------------~a~~~~~~f~~dl~~LgI~~d~~~~raT---~hi~~i~~~i~~L~ekG~aY~~~~g~vyfdv~~~~ 149 (465)
T TIGR00435 85 YE------------VSERFIEAYFEDMKALNVLPPDLEPRAT---EHIDEIIEFIEQLIEKGYAYVSDNGDVYFDVSKFK 149 (465)
T ss_pred HH------------HHHHHHHHHHHHHHHhCCCCCcCCcccc---ccHHHHHHHHHHHHHCCCEEEecCCcEEEeccccc
Confidence 64 3578899999999999999995332223 78899999999999999999998 99999876521
Q ss_pred ccCccccccccCCCceEEEEEEecCCCeeEEEEecCCccccCCcEEEECCCCchhhhcccCeeecCCCCCCeeeEEecCC
Q 003578 238 AVSDLEVEYSEEPGTLYYIKYRVAGRSDFLTIATTRPETLFGDVALAVNPQDEHYSQFIGMMAIVPMTYGRHVPIISDKY 317 (809)
Q Consensus 238 ~lsd~Ev~~~~~~~~~~~~~f~~~~~~~~l~v~Tt~petl~~~~av~v~p~~~~y~~l~g~~~~~P~~~~~~vpi~~~~~ 317 (809)
.|++|.|..+..
T Consensus 150 -----------------------------------------------------~yG~ls~~~~~~--------------- 161 (465)
T TIGR00435 150 -----------------------------------------------------DYGKLSKQDLDQ--------------- 161 (465)
T ss_pred -----------------------------------------------------hhccCCCCCHHH---------------
Confidence 122222211100
Q ss_pred ccccCCCCceeecCCCChhhHHHHHHhCCCceeecCCCCcccccccccCCCCHHHHHHHHHHHHHHCCCeeeeecccccC
Q 003578 318 VDKEFGTGVLKISPGHDHNDYLLARKLGLPILNVMNKDGTLNEVAGLFRGLDRFEARKKLWSDLEETGLAVKKEPHTLRV 397 (809)
Q Consensus 318 V~~~~GTG~v~~~P~h~~~D~~~~~~~~l~~~~~~~~~G~~~~~~g~~~G~~~~~a~~~i~~~L~~~g~~~~~~~~~~~~ 397 (809)
+..|.++-...-.++|.||.+||+
T Consensus 162 --~~~~~~~~~~~~K~~p~DF~Lwk~------------------------------------------------------ 185 (465)
T TIGR00435 162 --LEAGARVDVDEAKRNKLDFVLWKS------------------------------------------------------ 185 (465)
T ss_pred --HhcccccCcccccCCCCCceeeCC------------------------------------------------------
Confidence 000111100001244555555532
Q ss_pred cccccCCCeeEEeeccceeeeccHHHHHHHHHHhcCCceEecchhHHHHHHHHhcCCceeeeccccccceeeEEEEcCCc
Q 003578 398 PRSQRGGEVIEPLVSKQWFVTMEPLAEKALHAVEKGELTIMPERFEKIYNHWLSNIKDWCISRQLWWGHRIPVWYIVGKE 477 (809)
Q Consensus 398 p~c~r~~~~i~~~~~~qwfl~~~~~~~~~~~~~~~~~~~~~P~~~~~~~~~~l~~l~Dw~ISRq~~WG~piP~~~~~~~~ 477 (809)
.++ |++ .| ...||...|-||+++.
T Consensus 186 ------~~~--------------------------~~~-------------------~w----~spwG~grpgWhiecs- 209 (465)
T TIGR00435 186 ------SKE--------------------------GEP-------------------KW----DSPWGKGRPGWHIECS- 209 (465)
T ss_pred ------CCC--------------------------CCC-------------------CC----cCCCCCCCCCcHhHHH-
Confidence 110 000 12 3469999999999751
Q ss_pred ccEEEcCChhHHHHHHhhhcCCCccccccCCccceeecccCccceecCCCCCChhhhhhcCCCcEEEeeehhHHhHHHHH
Q 003578 478 EEYIVARNADEALEKAHQKYGKNVEIYQDPDVLDTWFSSALWPFSTLGWPDVSADDFKKFYPTTMLETGHDILFFWVARM 557 (809)
Q Consensus 478 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dvld~Wfds~~~~~~~~~~~~~~~~~~~~~~p~d~~~~G~Di~~~w~~~~ 557 (809)
+| .+. .+| -|.|+|.+|.|++++|+.+.
T Consensus 210 -------------------------------am-------~~~--~lg------------~~~Dih~gG~Dl~fpHhene 237 (465)
T TIGR00435 210 -------------------------------AM-------NDK--YLG------------DQIDIHGGGVDLIFPHHENE 237 (465)
T ss_pred -------------------------------HH-------HHH--hcC------------CCceeeccccccccchHHHH
Confidence 00 000 011 25799999999999999999
Q ss_pred HHHHHHhcCCCCceeEEEeeeEEccCCCcccccccCccChhhHHHhhCCchHHHHHhhCCCCCcccccHHHHHHHHHHHH
Q 003578 558 VMMGIEFTGSVPFSHVYLHGLIRDSQGRKMSKTLGNVIDPIDTIKEFGADALRFTISLGTAGQDLSLSIERLTANKAFTN 637 (809)
Q Consensus 558 ~~~~~~l~~~~Pf~~v~~hg~vld~~G~KMSKS~GN~I~p~dli~~ygaD~lR~~ll~~~~~~d~~fs~~~l~~~~~~~~ 637 (809)
++++.+++|+ ||.++|+|+.+++.+|+|||||+||+|+|.|++++||+|++|||+++.+++++++|+++.+...++.++
T Consensus 238 ~aqs~a~~g~-~~~~~~~h~g~v~~~g~KMSKS~GN~i~~~dll~~~~~dalR~~ll~~~~~~~l~fs~~~l~~a~~~~~ 316 (465)
T TIGR00435 238 IAQSEAAFGK-QLAKYWMHNGFLMIDNEKMSKSLGNFFTVRDVLKNYDPEILRYFLLSVHYRSPLDFSEELLEAAKNALE 316 (465)
T ss_pred HHHHHHhcCC-CCCcEEEEeeEEEecCccccccCCCcCCHHHHHHHCCHHHHHHHHHhCCCCCCCccCHHHHHHHHHHHH
Confidence 9999999886 779999998888899999999999999999999999999999999999899999999999999999999
Q ss_pred HHHHHHHHHHHhCCCCCchhhHHHHhhhccchhhhhcCCCchhHHHHHHHHHHHHHHHHHh-hcCChHHHHHHHHHHH
Q 003578 638 KLWNAGKFILQNLPSQNDISRWEILLAYKFDEEECLCKAPLPECWVVSKLHMLIDTVTASY-DKYFFGDVGRETYDFF 714 (809)
Q Consensus 638 kl~N~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~~d~~il~~l~~~~~~v~~a~-e~~~f~~a~~~i~~f~ 714 (809)
+|+|+++++......... .. +. .......+.+.+.++| ++++++.|+..|.+++
T Consensus 317 rl~~~~~~~~~~~~~~~~------------------~~----~~-~~~~~~~~~~~f~~al~dDlnt~~a~~~l~~~~ 371 (465)
T TIGR00435 317 RLYKALRVLDTTLAYSGN------------------QS----LN-KFPDEKEFEARFVEAMDDDLNTANALAVLFELA 371 (465)
T ss_pred HHHHHHHHHHhhhccccc------------------cc----cc-cchhHHHHHHHHHHHHhhccCHHHHHHHHHHHH
Confidence 999999877543211000 00 00 0012234556777888 5899999999999997
No 48
>PTZ00399 cysteinyl-tRNA-synthetase; Provisional
Probab=100.00 E-value=6.5e-41 Score=390.11 Aligned_cols=378 Identities=19% Similarity=0.226 Sum_probs=279.2
Q ss_pred CCCCCCCCCCCEEEeCCCCCCCCCCcchhhHHHHHHHHHHHHHH-HCCCcccccCCCCCCCCchHHHHHHHHHHcCCC-c
Q 003578 81 FKPNFERGSDPFVISMPPPNVTGSLHMGHAMFVTLEDIMVRYHR-MKGRPTLWLPGTDHAGIATQLVVEKMLAAEGIK-R 158 (809)
Q Consensus 81 f~~~~~~~~~~f~i~~~pPy~nG~lHiGH~~~~~~~Di~~Ry~r-m~G~~V~~~~G~D~~Gl~~~~~~e~~~~~~g~~-~ 158 (809)
|.+... ++=.+++|.|.+| +.+|||||++|+..||+.||+| ..||+|.|++|+|+||-+| .+.|++.|++ +
T Consensus 53 f~p~~~-~~v~~Y~CGPTvY--d~~HiGhart~v~~Dil~R~l~~~~Gy~V~~v~nitDidDKI----i~~A~~~g~~~~ 125 (651)
T PTZ00399 53 FVPQNG-RQVRWYTCGPTVY--DSSHLGHARTYVTFDIIRRILEDYFGYDVFYVMNITDIDDKI----IKRAREEKLSIF 125 (651)
T ss_pred cccCCC-CeeEEEEeCCCcc--CCcccccchHHHHHHHHHHHHHHhcCCceEEEeCCCCcchHH----HHHHHHhCCCcH
Confidence 555432 3346777776555 9999999999999999999999 9999999999999999984 4556778887 6
Q ss_pred cccCHHHHHHHHHHHHHHHHHHHHHHHHHhccccc-CCCccccCChhhHHHHHHHHHHHHHcCceeecCcccccCCCCCc
Q 003578 159 VELSRDEFTKRVWEWKEKYGGTITSQIKRLGASCD-WTRERFTLDEQLSRAVVEAFIRLHEKGLIYQGSYMVNWSPNLQT 237 (809)
Q Consensus 159 ~~~~~~~f~~~~~~~~~~~~~~~~~~l~~lgi~~D-w~~~~~T~d~~~~~~v~~~f~~L~~~Gliy~~~~~v~w~p~~~t 237 (809)
.+ ++++|.+.+.++|++|||..+ +. |.-.+|...+..++.+|.++|++|.+...|+++...
T Consensus 126 ~e------------l~~~~~~~f~~d~~~Lni~~p~~~----~r~tehi~~ii~~i~~Li~~G~aY~~~gsvyFd~~~-- 187 (651)
T PTZ00399 126 LE------------LARKWEKEFFEDMKALNVRPPDVI----TRVSEYVPEIVDFIQKIIDNGFAYESNGSVYFDVEA-- 187 (651)
T ss_pred HH------------HHHHHHHHHHHHHHHcCCCCCccc----cCcCccHHHHHHHHHHHHHCCCEEEECCeEEEEchh--
Confidence 53 457888999999999999987 32 233689999999999999999999987776654321
Q ss_pred ccCccccccccCCCceEEEEEEecCCCeeEEEEecCCccccCCcEEEECCCCchhhhcccCeeecCCCCCCeeeEEecCC
Q 003578 238 AVSDLEVEYSEEPGTLYYIKYRVAGRSDFLTIATTRPETLFGDVALAVNPQDEHYSQFIGMMAIVPMTYGRHVPIISDKY 317 (809)
Q Consensus 238 ~lsd~Ev~~~~~~~~~~~~~f~~~~~~~~l~v~Tt~petl~~~~av~v~p~~~~y~~l~g~~~~~P~~~~~~vpi~~~~~ 317 (809)
|+ + ....|..|. |.. + .+-
T Consensus 188 --------------------f~--~-------------------------~~~~Yg~L~------p~~-~-------~~~ 206 (651)
T PTZ00399 188 --------------------FR--K-------------------------AGHVYPKLE------PES-V-------ADE 206 (651)
T ss_pred --------------------cc--c-------------------------chhhHHhhC------hhh-c-------CCH
Confidence 10 0 001122221 100 0 011
Q ss_pred ccccCCCCce-eec-CCCChhhHHHHHHhCCCceeecCCCCcccccccccCCCCHHHHHHHHHHHHHHCCCeeeeecccc
Q 003578 318 VDKEFGTGVL-KIS-PGHDHNDYLLARKLGLPILNVMNKDGTLNEVAGLFRGLDRFEARKKLWSDLEETGLAVKKEPHTL 395 (809)
Q Consensus 318 V~~~~GTG~v-~~~-P~h~~~D~~~~~~~~l~~~~~~~~~G~~~~~~g~~~G~~~~~a~~~i~~~L~~~g~~~~~~~~~~ 395 (809)
..+..|.|.+ ..+ -..++.||.+|+...
T Consensus 207 ~~~~~g~~~l~~~~~~Kr~~~DFaLWk~~k-------------------------------------------------- 236 (651)
T PTZ00399 207 DRIAEGEGALGKVSGEKRSPNDFALWKASK-------------------------------------------------- 236 (651)
T ss_pred HHHhcccCCccccCcCCCCCccHHhhCCCC--------------------------------------------------
Confidence 2222344422 222 245667777764210
Q ss_pred cCcccccCCCeeEEeeccceeeeccHHHHHHHHHHhcCCceEecchhHHHHHHHHhcCCceeeeccccccceeeEEEEcC
Q 003578 396 RVPRSQRGGEVIEPLVSKQWFVTMEPLAEKALHAVEKGELTIMPERFEKIYNHWLSNIKDWCISRQLWWGHRIPVWYIVG 475 (809)
Q Consensus 396 ~~p~c~r~~~~i~~~~~~qwfl~~~~~~~~~~~~~~~~~~~~~P~~~~~~~~~~l~~l~Dw~ISRq~~WG~piP~~~~~~ 475 (809)
| |+ ..|. ..||-.-|.|+++|
T Consensus 237 ----------p--------------------------ge-------------------p~W~----SpwG~GrPGWHiEC 257 (651)
T PTZ00399 237 ----------P--------------------------GE-------------------PSWD----SPWGKGRPGWHIEC 257 (651)
T ss_pred ----------C--------------------------CC-------------------CCCC----CCCCCCCCCchHHH
Confidence 0 00 0132 36888889998864
Q ss_pred CcccEEEcCChhHHHHHHhhhcCCCccccccCCccceeecccCccceecCCCCCChhhhhhcCCCcEEEeeehhHHhHHH
Q 003578 476 KEEEYIVARNADEALEKAHQKYGKNVEIYQDPDVLDTWFSSALWPFSTLGWPDVSADDFKKFYPTTMLETGHDILFFWVA 555 (809)
Q Consensus 476 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dvld~Wfds~~~~~~~~~~~~~~~~~~~~~~p~d~~~~G~Di~~~w~~ 555 (809)
- .+--..+| .|.|+|.+|.|++|.|+-
T Consensus 258 s-----------------------------------------am~~~~lg------------~~~DIh~gG~DL~FPHHe 284 (651)
T PTZ00399 258 S-----------------------------------------AMASNILG------------DPIDIHSGGIDLKFPHHD 284 (651)
T ss_pred H-----------------------------------------HHHHHHcC------------CcceeeccCCCCCCCcch
Confidence 0 00000111 378999999999999999
Q ss_pred HHHHHHHHhcCCCCceeEEEe-eeEEccCCCcccccccCccChhhHHHhhCCchHHHHHhhCCCCCcccccHHHHHHHHH
Q 003578 556 RMVMMGIEFTGSVPFSHVYLH-GLIRDSQGRKMSKTLGNVIDPIDTIKEFGADALRFTISLGTAGQDLSLSIERLTANKA 634 (809)
Q Consensus 556 ~~~~~~~~l~~~~Pf~~v~~h-g~vld~~G~KMSKS~GN~I~p~dli~~ygaD~lR~~ll~~~~~~d~~fs~~~l~~~~~ 634 (809)
..++.+.+++|+.||.++|+| ||| +.+|+|||||+||+|+|.|++++||+|++||||++.++++|++||++.+....+
T Consensus 285 NEiAQseA~~~~~~~v~y~~H~G~L-~i~G~KMSKSLGNfItp~dlLekygaDaLR~~lLs~~~~~dldFS~e~l~~a~~ 363 (651)
T PTZ00399 285 NELAQSEAYFDKHQWVNYFLHSGHL-HIKGLKMSKSLKNFITIRQALSKYTARQIRLLFLLHKWDKPMNYSDESMDEAIE 363 (651)
T ss_pred hHHHHHHHhhCCCCCCcEEEEEEEE-EeccchhhhcCCCcccHHHHHHHcChHHHHHHHHhcCCCCCCccCHHHHHHHHH
Confidence 999999999998899999999 776 599999999999999999999999999999999998889999999999999888
Q ss_pred HHHHHHHHHHHHHHhCCCCCchhhHHHHhhhccchhhhhcCCCchhHHHHHHHHHHHHHHHHHh-hcCChHHHHHHHHHH
Q 003578 635 FTNKLWNAGKFILQNLPSQNDISRWEILLAYKFDEEECLCKAPLPECWVVSKLHMLIDTVTASY-DKYFFGDVGRETYDF 713 (809)
Q Consensus 635 ~~~kl~N~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~~d~~il~~l~~~~~~v~~a~-e~~~f~~a~~~i~~f 713 (809)
..++++|++.++...+..... .....+...|++++..+..+...+.++| ++++++.|+..++++
T Consensus 364 ~~~~l~n~~~rl~s~l~~~~~---------------~~~~~~~~~d~~Ll~~l~~~~~~v~~Am~Ddfnt~~Al~~L~eL 428 (651)
T PTZ00399 364 KDKVFFNFFANVKIKLRESEL---------------TSPQKWTQHDFELNELFEETKSAVHAALLDNFDTPEALQALQKL 428 (651)
T ss_pred HHHHHHHHHHHHHHHHhhccc---------------cccccCCHHHHHHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHH
Confidence 888888887766543321100 0011234568899999999999999999 789999999999999
Q ss_pred HHHhhHHHHHH
Q 003578 714 FWSDFADWYIE 724 (809)
Q Consensus 714 ~~~~~~n~Yi~ 724 (809)
+ ..+|.|++
T Consensus 429 v--~~~N~yi~ 437 (651)
T PTZ00399 429 I--SATNTYLN 437 (651)
T ss_pred H--HHHHHHHh
Confidence 8 46899986
No 49
>TIGR03447 mycothiol_MshC cysteine--1-D-myo-inosityl 2-amino-2-deoxy-alpha-D-glucopyranoside ligase. Members of this protein family are MshC, l-cysteine:1-D-myo-inosityl 2-amino-2-deoxy-alpha-D-glucopyranoside ligase, an enzyme that uses ATP to ligate a Cys residue to a mycothiol precursor molecule, in the second to last step in mycothiol biosynthesis. This enzyme shows considerable homology to Cys--tRNA ligases, and many instances are misannotated as such. Mycothiol is found in Mycobacterium tuberculosis, Corynebacterium glutamicum, Streptomyces coelicolor, and various other members of the Actinobacteria. Mycothiol is an analog to glutathione.
Probab=100.00 E-value=2e-41 Score=370.23 Aligned_cols=338 Identities=19% Similarity=0.163 Sum_probs=249.7
Q ss_pred CCCEEEeCCCCCCCCCCcchhhHHHHHHHHHHHHHHHCCCcccccCCCCCCCCchHHHHHHHHHHcCCCccccCHHHHHH
Q 003578 89 SDPFVISMPPPNVTGSLHMGHAMFVTLEDIMVRYHRMKGRPTLWLPGTDHAGIATQLVVEKMLAAEGIKRVELSRDEFTK 168 (809)
Q Consensus 89 ~~~f~i~~~pPy~nG~lHiGH~~~~~~~Di~~Ry~rm~G~~V~~~~G~D~~Gl~~~~~~e~~~~~~g~~~~~~~~~~f~~ 168 (809)
+-+++++.|.|| +.+||||+++++..|+++||+|++|++|.|++|+|+||.+| .+.|+++|+++++
T Consensus 36 ~v~~YvCGpTvY--~~~HIGhart~V~~Dvl~R~lr~~G~~V~fV~nitD~dDKI----i~~A~~~g~t~~e-------- 101 (411)
T TIGR03447 36 EAGMYVCGITPY--DATHLGHAATYLTFDLVNRVWRDAGHRVHYVQNVTDVDDPL----FERAERDGVDWRE-------- 101 (411)
T ss_pred cceEEEeCCccC--CCcccccchHHHHHHHHHHHHHhcCCceEEeeCCCchhHHH----HHHHHHcCCCHHH--------
Confidence 446777777666 89999999999999999999999999999999999999995 4556788999874
Q ss_pred HHHHHHHHHHHHHHHHHHHhccc-cc-CCCccccCChhhHHHHHHHHHHHHHcCceeecCc----ccccCCCCCcccCcc
Q 003578 169 RVWEWKEKYGGTITSQIKRLGAS-CD-WTRERFTLDEQLSRAVVEAFIRLHEKGLIYQGSY----MVNWSPNLQTAVSDL 242 (809)
Q Consensus 169 ~~~~~~~~~~~~~~~~l~~lgi~-~D-w~~~~~T~d~~~~~~v~~~f~~L~~~Gliy~~~~----~v~w~p~~~t~lsd~ 242 (809)
++++|.+.+.+.+++||+. .| +-| |++. .+.+++++.+|.++|+||.... .|+++...
T Consensus 102 ----la~~y~~~f~~d~~~Lni~~~d~~~R---aTe~--i~~ii~~i~~L~~kG~aY~~~~~~~~~VYFdv~~------- 165 (411)
T TIGR03447 102 ----LGTSQIDLFREDMEALRVLPPRDYIG---AVES--IDEVIEMVEKLLAAGAAYEVEGPEYPDVYFSIEA------- 165 (411)
T ss_pred ----HHHHHHHHHHHHHHHcCCCCCCcccC---CCCC--HHHHHHHHHHHHHCCCEEecCCCCcCcEEEeccc-------
Confidence 4578999999999999987 44 544 4443 7889999999999999999876 57654321
Q ss_pred ccccccCCCceEEEEEEecCCCeeEEEEecCCccccCCcEEEECCCCchhhhcccCeeecCCCCCCeeeEEecCCccccC
Q 003578 243 EVEYSEEPGTLYYIKYRVAGRSDFLTIATTRPETLFGDVALAVNPQDEHYSQFIGMMAIVPMTYGRHVPIISDKYVDKEF 322 (809)
Q Consensus 243 Ev~~~~~~~~~~~~~f~~~~~~~~l~v~Tt~petl~~~~av~v~p~~~~y~~l~g~~~~~P~~~~~~vpi~~~~~V~~~~ 322 (809)
.+.|..|.|.....-.. + . -
T Consensus 166 ----------------------------------------------~~~YG~Ls~~~~~~~~~-~------~-------~ 185 (411)
T TIGR03447 166 ----------------------------------------------TEQFGYESGYDRATMLE-L------F-------A 185 (411)
T ss_pred ----------------------------------------------hhccccccCCCHHHHHh-h------h-------c
Confidence 11233333221110000 0 0 0
Q ss_pred CCCceeecC-CCChhhHHHHHHhCCCceeecCCCCcccccccccCCCCHHHHHHHHHHHHHHCCCeeeeecccccCcccc
Q 003578 323 GTGVLKISP-GHDHNDYLLARKLGLPILNVMNKDGTLNEVAGLFRGLDRFEARKKLWSDLEETGLAVKKEPHTLRVPRSQ 401 (809)
Q Consensus 323 GTG~v~~~P-~h~~~D~~~~~~~~l~~~~~~~~~G~~~~~~g~~~G~~~~~a~~~i~~~L~~~g~~~~~~~~~~~~p~c~ 401 (809)
+.++-...+ ..++.||.+||..+.
T Consensus 186 ~~~~~~~~~~K~~p~DFaLWK~~~~------------------------------------------------------- 210 (411)
T TIGR03447 186 ERGGDPDRPGKRDPLDALLWRAARE------------------------------------------------------- 210 (411)
T ss_pred ccccCcccccCCCCcccceeCCCCC-------------------------------------------------------
Confidence 000000011 356667777653210
Q ss_pred cCCCeeEEeeccceeeeccHHHHHHHHHHhcCCceEecchhHHHHHHHHhcCCceeeeccccccceeeEEEEcCCcccEE
Q 003578 402 RGGEVIEPLVSKQWFVTMEPLAEKALHAVEKGELTIMPERFEKIYNHWLSNIKDWCISRQLWWGHRIPVWYIVGKEEEYI 481 (809)
Q Consensus 402 r~~~~i~~~~~~qwfl~~~~~~~~~~~~~~~~~~~~~P~~~~~~~~~~l~~l~Dw~ISRq~~WG~piP~~~~~~~~~~~~ 481 (809)
+++. | ...||.-.|-||++|-
T Consensus 211 -------------------------------~e~~-------------------w----~spwG~GRPGWHiECs----- 231 (411)
T TIGR03447 211 -------------------------------GEPS-------------------W----DSPFGPGRPGWHIECS----- 231 (411)
T ss_pred -------------------------------CCCC-------------------c----cCCCCCCCChhHHHHH-----
Confidence 0111 1 3469999999999761
Q ss_pred EcCChhHHHHHHhhhcCCCccccccCCccceeecccCccceecCCCCCChhhhhhcCCCcEEEeeehhHHhHHHHHHHHH
Q 003578 482 VARNADEALEKAHQKYGKNVEIYQDPDVLDTWFSSALWPFSTLGWPDVSADDFKKFYPTTMLETGHDILFFWVARMVMMG 561 (809)
Q Consensus 482 ~~~~~~~~~~~~~~~~~~~~~~~~~~dvld~Wfds~~~~~~~~~~~~~~~~~~~~~~p~d~~~~G~Di~~~w~~~~~~~~ 561 (809)
.+-...+| -+.|+|.+|.|+++.|+.+.++.+
T Consensus 232 ------------------------------------am~~~~lg------------~~~Dih~GG~DLifpHheneiaq~ 263 (411)
T TIGR03447 232 ------------------------------------AIATNRLG------------AGFDIQGGGSDLIFPHHEFSAAHA 263 (411)
T ss_pred ------------------------------------HHHHHHcC------------CceecccCcccccccchHhHHHHH
Confidence 00000111 136899999999999999999999
Q ss_pred HHhcCCCCceeEEEeeeEEccCCCcccccccCccChhhHHHh-hCCchHHHHHhhCCCCCcccccHHHHHHHHHHHHHHH
Q 003578 562 IEFTGSVPFSHVYLHGLIRDSQGRKMSKTLGNVIDPIDTIKE-FGADALRFTISLGTAGQDLSLSIERLTANKAFTNKLW 640 (809)
Q Consensus 562 ~~l~~~~Pf~~v~~hg~vld~~G~KMSKS~GN~I~p~dli~~-ygaD~lR~~ll~~~~~~d~~fs~~~l~~~~~~~~kl~ 640 (809)
.+++++.||.++|+|+.+++.+|+|||||+||+|++.++++. |++|++|||+++++++++++||++.++..++.+++|+
T Consensus 264 ~A~~g~~~~~~~w~H~g~l~~~G~KMSKSlGN~i~~~dl~~~g~dp~~lRl~lls~~Yr~pl~fs~e~l~~a~~~l~rl~ 343 (411)
T TIGR03447 264 EAATGVRRMARHYVHAGMIGLDGEKMSKSLGNLVFVSKLRAAGVDPAAIRLGLLAGHYRQDRDWTDAVLAEAEARLARWR 343 (411)
T ss_pred HHhcCCCCcceEEEECCEECcCCCCccCcCCCCCCHHHHHhcCCCcccEEEEEecCCCCCCCccCHHHHHHHHHHHHHHH
Confidence 999998899999999999999999999999999999999886 8999999999999999999999999999999999988
Q ss_pred HHHHHHHHhCCCCCchhhHHHHhhhccchhhhhcCCCchhHHHHHHHHHHHHHHHHHh-hcCChHHHHHHHHHHH
Q 003578 641 NAGKFILQNLPSQNDISRWEILLAYKFDEEECLCKAPLPECWVVSKLHMLIDTVTASY-DKYFFGDVGRETYDFF 714 (809)
Q Consensus 641 N~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~~d~~il~~l~~~~~~v~~a~-e~~~f~~a~~~i~~f~ 714 (809)
+++..+. . . .+..+...+.++| +++++..|+..+++++
T Consensus 344 ~~~~~~~-------~-----------------------~------~~~~~~~~~~~al~dDln~p~a~~~l~~~~ 382 (411)
T TIGR03447 344 AALAATD-------A-----------------------P------DATDLIARLRQHLANDLDTPAALAAVDNWA 382 (411)
T ss_pred HHHhhcc-------c-----------------------c------hHHHHHHHHHHHHHhcCChHHHHHHHHHHH
Confidence 8654210 0 0 1123445666777 5899999999999987
No 50
>PRK14536 cysS cysteinyl-tRNA synthetase; Provisional
Probab=100.00 E-value=1.9e-40 Score=371.54 Aligned_cols=360 Identities=17% Similarity=0.171 Sum_probs=263.8
Q ss_pred EEEeCCCCCCCCCCcchhhHHHHHHHHHHHHHHHCCCcccccC----------CCCCCCCchHHHHHHHHHHcCCCcccc
Q 003578 92 FVISMPPPNVTGSLHMGHAMFVTLEDIMVRYHRMKGRPTLWLP----------GTDHAGIATQLVVEKMLAAEGIKRVEL 161 (809)
Q Consensus 92 f~i~~~pPy~nG~lHiGH~~~~~~~Di~~Ry~rm~G~~V~~~~----------G~D~~Gl~~~~~~e~~~~~~g~~~~~~ 161 (809)
=+-++| |+|++.+||||+++++..|+++||+|++||+|.|++ |+|+||-+| .+.++++|+++.+
T Consensus 25 ~mYvCG-pTvy~~~HiGhar~~v~~Dvl~R~l~~~G~~V~~v~NiTDv~hl~~~~De~ddKi----i~~A~~~g~~~~e- 98 (490)
T PRK14536 25 RLYGCG-PTVYNYAHIGNLRTYVFQDTLRRTLHFLGYRVTHVMNITDVGHLTDDADSGEDKM----VKSAQEHGKSVLE- 98 (490)
T ss_pred EEEeeC-CccCCCcccchhHHHHHHHHHHHHHHhcCCceEEEEeeccccccccCCcCCChHH----HHHHHHcCCCHHH-
Confidence 344577 899999999999999999999999999999999996 999999884 4556788999864
Q ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHHhcccccCCCccccCChhhHHHHHHHHHHHHHcCceeecCcccccCCCCCcccCc
Q 003578 162 SRDEFTKRVWEWKEKYGGTITSQIKRLGASCDWTRERFTLDEQLSRAVVEAFIRLHEKGLIYQGSYMVNWSPNLQTAVSD 241 (809)
Q Consensus 162 ~~~~f~~~~~~~~~~~~~~~~~~l~~lgi~~Dw~~~~~T~d~~~~~~v~~~f~~L~~~Gliy~~~~~v~w~p~~~t~lsd 241 (809)
++++|.+.+.+.+++|||..+ .++|..++|...++.++.+|.++|++|.+...|+||+..
T Consensus 99 -----------~a~~~~~~f~~d~~~Lni~~~---~~~~rat~hi~~ii~~i~~L~~kG~aY~~~~~vyFdv~~------ 158 (490)
T PRK14536 99 -----------IAAHYTAAFFRDTARLNIERP---SIVCNATEHIQDMIALIKRLEARGHTYCAGGNVYFDIRT------ 158 (490)
T ss_pred -----------HHHHHHHHHHHHHHHcCCCCC---ceecCcccHHHHHHHHHHHHHHCCCEEEECCeEEEeCCc------
Confidence 457899999999999999987 233566899999999999999999999999999987631
Q ss_pred cccccccCCCceEEEEEEecCCCeeEEEEecCCccccCCcEEEECCCCchhhhcccCeeecCCCCCCeeeEEecCCcccc
Q 003578 242 LEVEYSEEPGTLYYIKYRVAGRSDFLTIATTRPETLFGDVALAVNPQDEHYSQFIGMMAIVPMTYGRHVPIISDKYVDKE 321 (809)
Q Consensus 242 ~Ev~~~~~~~~~~~~~f~~~~~~~~l~v~Tt~petl~~~~av~v~p~~~~y~~l~g~~~~~P~~~~~~vpi~~~~~V~~~ 321 (809)
.+.|++|.|..... +.
T Consensus 159 -----------------------------------------------~~~YG~Ls~~~~~~-----------------l~ 174 (490)
T PRK14536 159 -----------------------------------------------FPSYGSLASAAVED-----------------LQ 174 (490)
T ss_pred -----------------------------------------------ccchhhhcCCCHHH-----------------hh
Confidence 12233333322110 00
Q ss_pred CCCCceeec-CCCChhhHHHHHHhCCCceeecCCCCcccccccccCCCCHHHHHHHHHHHHHHCCCeeeeecccccCccc
Q 003578 322 FGTGVLKIS-PGHDHNDYLLARKLGLPILNVMNKDGTLNEVAGLFRGLDRFEARKKLWSDLEETGLAVKKEPHTLRVPRS 400 (809)
Q Consensus 322 ~GTG~v~~~-P~h~~~D~~~~~~~~l~~~~~~~~~G~~~~~~g~~~G~~~~~a~~~i~~~L~~~g~~~~~~~~~~~~p~c 400 (809)
.|.. |-.. -..+|.||.+|+...
T Consensus 175 ~g~~-v~~~~~K~np~DFaLWK~~~------------------------------------------------------- 198 (490)
T PRK14536 175 AGAR-IEHDTNKRNPHDFVLWFTRS------------------------------------------------------- 198 (490)
T ss_pred cCCc-CCCCCCCCCchhchhccccc-------------------------------------------------------
Confidence 0111 0001 134566666654210
Q ss_pred ccCCCeeEEeeccceeeeccHHHHHHHHHHhcCCceEecchhHHHHHHHHhcCCceeeeccccccceeeEEEEcCCcccE
Q 003578 401 QRGGEVIEPLVSKQWFVTMEPLAEKALHAVEKGELTIMPERFEKIYNHWLSNIKDWCISRQLWWGHRIPVWYIVGKEEEY 480 (809)
Q Consensus 401 ~r~~~~i~~~~~~qwfl~~~~~~~~~~~~~~~~~~~~~P~~~~~~~~~~l~~l~Dw~ISRq~~WG~piP~~~~~~~~~~~ 480 (809)
.+.+..+++...||...|-||++|-
T Consensus 199 ---------------------------------------------------~~~~~~~~W~SpWG~GRPGWHIECs---- 223 (490)
T PRK14536 199 ---------------------------------------------------KFENHALTWDSPWGRGYPGWHIECS---- 223 (490)
T ss_pred ---------------------------------------------------CCCCCCCcccCCCCCCCCChHHHHH----
Confidence 1122234556789999999998751
Q ss_pred EEcCChhHHHHHHhhhcCCCccccccCCccceeecccCccceecCCCCCChhhhhhcCCCcEEEeeehhHHhHHHHHHHH
Q 003578 481 IVARNADEALEKAHQKYGKNVEIYQDPDVLDTWFSSALWPFSTLGWPDVSADDFKKFYPTTMLETGHDILFFWVARMVMM 560 (809)
Q Consensus 481 ~~~~~~~~~~~~~~~~~~~~~~~~~~~dvld~Wfds~~~~~~~~~~~~~~~~~~~~~~p~d~~~~G~Di~~~w~~~~~~~ 560 (809)
. +....+| -..|+|.+|.|++|+|+...+++
T Consensus 224 ------------------------------------a-Ms~~~lg------------~~~DIH~GG~DliFPHHeneiAq 254 (490)
T PRK14536 224 ------------------------------------A-MSMKYLG------------EQCDIHIGGVDHIRVHHTNEIAQ 254 (490)
T ss_pred ------------------------------------H-HHHHHcC------------CceeEEeccccCCCcchhhHHHH
Confidence 0 0000011 12599999999999999999999
Q ss_pred HHHhcCCCCceeEEEeeeEEccCCCcccccccCccChhhHHHh-hCCchHHHHHhhCCCCCcccccHHHHHHHHHHHHHH
Q 003578 561 GIEFTGSVPFSHVYLHGLIRDSQGRKMSKTLGNVIDPIDTIKE-FGADALRFTISLGTAGQDLSLSIERLTANKAFTNKL 639 (809)
Q Consensus 561 ~~~l~~~~Pf~~v~~hg~vld~~G~KMSKS~GN~I~p~dli~~-ygaD~lR~~ll~~~~~~d~~fs~~~l~~~~~~~~kl 639 (809)
+.+++|+ ||.++|+|+.+++.+|+|||||+||+|++.|++++ |+++++||++++++++++++||++.|..+.+.+.+|
T Consensus 255 s~a~~g~-~~~~~w~h~g~l~~~g~KMSKSlGN~itl~dll~~g~~~~alR~~lls~~yr~~l~Fs~e~l~~a~~~~~rl 333 (490)
T PRK14536 255 CEAATGK-PWVRYWLHHEFLLMNKGKMSKSAGQFLTLSSLQEKGFQPLDYRFFLLGGHYRSQLAFSWEALKTAKAARRSL 333 (490)
T ss_pred HHHhcCC-CcceEEEEcCEEeecCccccccCCCcccHHHHHhcCCCHHHHHHHHHhCCCCCCCCCCHHHHHHHHHHHHHH
Confidence 9998887 88999999999999999999999999999999998 999999999999999999999999999999999999
Q ss_pred HHHHHHHHHhCCCCCchhhHHHHhhhccchhhhh-cCCC-chhHHHHHHHHHHHHHHHHHh-hcCChHHHHHHHHHHH
Q 003578 640 WNAGKFILQNLPSQNDISRWEILLAYKFDEEECL-CKAP-LPECWVVSKLHMLIDTVTASY-DKYFFGDVGRETYDFF 714 (809)
Q Consensus 640 ~N~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~-~~l~-~~d~~il~~l~~~~~~v~~a~-e~~~f~~a~~~i~~f~ 714 (809)
.+++..+......... .. .... .... ..+.-+...+..+...+.++| ++++++.|+..|.+++
T Consensus 334 ~~~~~~~~~~~~~~~~-~~-----------~~~~~~~~~~~~~~~~~~~~~~~~~~f~~al~dDlntp~Al~~l~~~~ 399 (490)
T PRK14536 334 VRRVARVVDAARATTG-SV-----------RGTLAECAAERVAESRASESELLLTDFRAALEDDFSTPKALSELQKLV 399 (490)
T ss_pred HHHHHHHHHhhhcccc-cc-----------cccccccccccccchhhhhHHHHHHHHHHHHHhcCChHHHHHHHHHHH
Confidence 8887665432110000 00 0000 0000 000001123456678888998 5899999999999997
No 51
>PRK12418 cysteinyl-tRNA synthetase; Provisional
Probab=100.00 E-value=1e-40 Score=363.62 Aligned_cols=340 Identities=18% Similarity=0.148 Sum_probs=250.1
Q ss_pred CEEEeCCCCCCCCCCcchhhHHHHHHHHHHHHHHHCCCcccccCCCCCCCCchHHHHHHHHHHcCCCccccCHHHHHHHH
Q 003578 91 PFVISMPPPNVTGSLHMGHAMFVTLEDIMVRYHRMKGRPTLWLPGTDHAGIATQLVVEKMLAAEGIKRVELSRDEFTKRV 170 (809)
Q Consensus 91 ~f~i~~~pPy~nG~lHiGH~~~~~~~Di~~Ry~rm~G~~V~~~~G~D~~Gl~~~~~~e~~~~~~g~~~~~~~~~~f~~~~ 170 (809)
+++++-| +|.|.+||||+++++..|+++||+|++|++|.|++|+|+||.+| .+.|+++|+++.+
T Consensus 11 ~~YvCGp--TvY~~~HIGh~r~~V~~Dvl~R~lr~~G~~V~~V~nitD~ddKI----i~~A~~~G~~~~e---------- 74 (384)
T PRK12418 11 TMYVCGI--TPYDATHLGHAATYLAFDLVNRVWRDAGHDVHYVQNVTDVDDPL----LERAARDGVDWRD---------- 74 (384)
T ss_pred EEEecCC--CCCCCCccchhHHHHHHHHHHHHHHHcCCceEEEEecCCcchHH----HHHHHHcCCCHHH----------
Confidence 4566555 44499999999999999999999999999999999999999995 4556788999874
Q ss_pred HHHHHHHHHHHHHHHHHhcc-ccc-CCCccccCChhhHHHHHHHHHHHHHcCceeecCc----ccccCCCCCcccCcccc
Q 003578 171 WEWKEKYGGTITSQIKRLGA-SCD-WTRERFTLDEQLSRAVVEAFIRLHEKGLIYQGSY----MVNWSPNLQTAVSDLEV 244 (809)
Q Consensus 171 ~~~~~~~~~~~~~~l~~lgi-~~D-w~~~~~T~d~~~~~~v~~~f~~L~~~Gliy~~~~----~v~w~p~~~t~lsd~Ev 244 (809)
+++++.+.+.+.+++||| +.| +-| |++ +.+.++.++.+|.++|++|+... .|+++...
T Consensus 75 --~a~~~~~~f~~d~~~Lni~~~~~~~r---aTe--~i~~~~~~i~~L~~kG~aY~~~~~~~~~VYFdv~~--------- 138 (384)
T PRK12418 75 --LAEREIALFREDMEALRVLPPRDYVG---AVE--SIPEVVELVEKLLASGAAYVVDDEEYPDVYFSVDA--------- 138 (384)
T ss_pred --HHHHHHHHHHHHHHHhCCCCCCcccc---CCC--CHHHHHHHHHHHHHCCCEEEeCCCCCccEEEecCc---------
Confidence 457899999999999997 555 444 444 48899999999999999999988 67764321
Q ss_pred ccccCCCceEEEEEEecCCCeeEEEEecCCccccCCcEEEECCCCchhhhcccCeeecCCCCCCeeeEEecCCccccC--
Q 003578 245 EYSEEPGTLYYIKYRVAGRSDFLTIATTRPETLFGDVALAVNPQDEHYSQFIGMMAIVPMTYGRHVPIISDKYVDKEF-- 322 (809)
Q Consensus 245 ~~~~~~~~~~~~~f~~~~~~~~l~v~Tt~petl~~~~av~v~p~~~~y~~l~g~~~~~P~~~~~~vpi~~~~~V~~~~-- 322 (809)
.+.|..|.|..... +..
T Consensus 139 --------------------------------------------~~~YG~ls~~~~~~-----------------~~~~~ 157 (384)
T PRK12418 139 --------------------------------------------TPQFGYESGYDRAT-----------------MLELF 157 (384)
T ss_pred --------------------------------------------hhhcccccCCCHHH-----------------HHhhh
Confidence 11232222211100 000
Q ss_pred CCCceee-c-CCCChhhHHHHHHhCCCceeecCCCCcccccccccCCCCHHHHHHHHHHHHHHCCCeeeeecccccCccc
Q 003578 323 GTGVLKI-S-PGHDHNDYLLARKLGLPILNVMNKDGTLNEVAGLFRGLDRFEARKKLWSDLEETGLAVKKEPHTLRVPRS 400 (809)
Q Consensus 323 GTG~v~~-~-P~h~~~D~~~~~~~~l~~~~~~~~~G~~~~~~g~~~G~~~~~a~~~i~~~L~~~g~~~~~~~~~~~~p~c 400 (809)
|...+-. . -..+|.||.+||...
T Consensus 158 ~~~~~~~~~~~K~~p~DFaLWK~~~------------------------------------------------------- 182 (384)
T PRK12418 158 AERGGDPDRPGKRDPLDALLWRAAR------------------------------------------------------- 182 (384)
T ss_pred cccccCcccccCCCcccceeeccCC-------------------------------------------------------
Confidence 0000000 0 134555665554210
Q ss_pred ccCCCeeEEeeccceeeeccHHHHHHHHHHhcCCceEecchhHHHHHHHHhcCCceeeeccccccceeeEEEEcCCcccE
Q 003578 401 QRGGEVIEPLVSKQWFVTMEPLAEKALHAVEKGELTIMPERFEKIYNHWLSNIKDWCISRQLWWGHRIPVWYIVGKEEEY 480 (809)
Q Consensus 401 ~r~~~~i~~~~~~qwfl~~~~~~~~~~~~~~~~~~~~~P~~~~~~~~~~l~~l~Dw~ISRq~~WG~piP~~~~~~~~~~~ 480 (809)
.+++. | ...||.-.|-||++|-
T Consensus 183 -------------------------------~~~~~-------------------w----~spwG~GRPGWHiECs---- 204 (384)
T PRK12418 183 -------------------------------PGEPS-------------------W----PSPFGPGRPGWHIECS---- 204 (384)
T ss_pred -------------------------------CCCCc-------------------c----cCCCCCCCChhHHHHH----
Confidence 00111 2 4569999999999761
Q ss_pred EEcCChhHHHHHHhhhcCCCccccccCCccceeecccCccceecCCCCCChhhhhhcCCCcEEEeeehhHHhHHHHHHHH
Q 003578 481 IVARNADEALEKAHQKYGKNVEIYQDPDVLDTWFSSALWPFSTLGWPDVSADDFKKFYPTTMLETGHDILFFWVARMVMM 560 (809)
Q Consensus 481 ~~~~~~~~~~~~~~~~~~~~~~~~~~~dvld~Wfds~~~~~~~~~~~~~~~~~~~~~~p~d~~~~G~Di~~~w~~~~~~~ 560 (809)
.+-...+| -+.|+|.+|.|++|.|+.+.++.
T Consensus 205 -------------------------------------am~~~~lg------------~~~DIH~GG~DL~FPHHeneiaq 235 (384)
T PRK12418 205 -------------------------------------AIALNRLG------------SGFDIQGGGSDLIFPHHEFSAAH 235 (384)
T ss_pred -------------------------------------HHHHHHcC------------CCcccccCccccccchhHhHHHH
Confidence 01001111 24799999999999999999999
Q ss_pred HHHhcCCCCceeEEEeeeEEccCCCcccccccCccChhhHHHh-hCCchHHHHHhhCCCCCcccccHHHHHHHHHHHHHH
Q 003578 561 GIEFTGSVPFSHVYLHGLIRDSQGRKMSKTLGNVIDPIDTIKE-FGADALRFTISLGTAGQDLSLSIERLTANKAFTNKL 639 (809)
Q Consensus 561 ~~~l~~~~Pf~~v~~hg~vld~~G~KMSKS~GN~I~p~dli~~-ygaD~lR~~ll~~~~~~d~~fs~~~l~~~~~~~~kl 639 (809)
+.+++|+.||.++|+|+.+++.+|+|||||+||+|+|.++++. ++++++|||+++++++++++|+++.++..++.++++
T Consensus 236 ~~a~~g~~~~~~~w~H~g~l~~~G~KMSKSlGN~i~~~ell~~G~d~~~lR~~lls~~yr~~l~fs~e~l~~a~~~l~r~ 315 (384)
T PRK12418 236 AEAATGERRFARHYVHAGMIGLDGEKMSKSRGNLVFVSRLRAAGVDPAAIRLALLAGHYRADREWTDAVLAEAEARLARW 315 (384)
T ss_pred HHHhcCCCCcceEEEECCEECCCCCcccCcCCCcCCHHHHHhccCChhheeEEEeccCCCCCcccCHHHHHHHHHHHHHH
Confidence 9999998899999999999999999999999999999998653 455599999998899999999999999999999999
Q ss_pred HHHHHHHHHhCCCCCchhhHHHHhhhccchhhhhcCCCchhHHHHHHHHHHHHHHHHHh-hcCChHHHHHHHHHHHHHhh
Q 003578 640 WNAGKFILQNLPSQNDISRWEILLAYKFDEEECLCKAPLPECWVVSKLHMLIDTVTASY-DKYFFGDVGRETYDFFWSDF 718 (809)
Q Consensus 640 ~N~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~~d~~il~~l~~~~~~v~~a~-e~~~f~~a~~~i~~f~~~~~ 718 (809)
+|++... . . . .+.++.+.+.++| +++++..|+..+.+++ ..
T Consensus 316 ~~~~~~~----~---~-----------------------~------~~~~~~~~f~~al~dDlnt~~a~~~l~~~~--~~ 357 (384)
T PRK12418 316 RAAAALP----A---G-----------------------P------DAADVVARVRAALADDLDTPGALAAVDGWA--TD 357 (384)
T ss_pred HHHHhcc----c---c-----------------------c------hHHHHHHHHHHHHHhcCChHHHHHHHHHHH--HH
Confidence 8865321 0 0 0 1223456788888 5899999999999998 35
Q ss_pred HHHHH
Q 003578 719 ADWYI 723 (809)
Q Consensus 719 ~n~Yi 723 (809)
.|.|+
T Consensus 358 ~n~~~ 362 (384)
T PRK12418 358 ALEGG 362 (384)
T ss_pred HHhcc
Confidence 66664
No 52
>PLN02946 cysteine-tRNA ligase
Probab=100.00 E-value=7.8e-40 Score=369.74 Aligned_cols=370 Identities=16% Similarity=0.149 Sum_probs=272.7
Q ss_pred CCCCCCCCCCCEEEeCCCCCCCCCCcchhhHHHHHHHHHHHHHHHCCCcccccCCCCCCCCchHHHHHHHHHHcCCCccc
Q 003578 81 FKPNFERGSDPFVISMPPPNVTGSLHMGHAMFVTLEDIMVRYHRMKGRPTLWLPGTDHAGIATQLVVEKMLAAEGIKRVE 160 (809)
Q Consensus 81 f~~~~~~~~~~f~i~~~pPy~nG~lHiGH~~~~~~~Di~~Ry~rm~G~~V~~~~G~D~~Gl~~~~~~e~~~~~~g~~~~~ 160 (809)
|.+... ++-..+ ++| |+|.|.+||||+++++..|+++||+|+.||+|.|++|+|+||.+| .+.|+++|+++.+
T Consensus 73 f~P~~~-~~v~~Y-~CG-pTvYd~~HIGhaR~~V~~Dvl~R~Lr~~Gy~V~~V~niTDiDDKI----i~~A~~~g~~~~e 145 (557)
T PLN02946 73 FKPKVE-GKVGMY-VCG-VTAYDLSHIGHARVYVTFDVLYRYLKHLGYEVRYVRNFTDVDDKI----IARANELGEDPIS 145 (557)
T ss_pred cccCCC-CceeEE-EeC-CccCCCCccccchhhHHHHHHHHHHHhcCCcEEEEECCCCccCHH----HHHHHHcCCCHHH
Confidence 665433 222333 457 899999999999999999999999999999999999999999995 4556778998874
Q ss_pred cCHHHHHHHHHHHHHHHHHHHHHHHHHhcccccCCCccccCChhhHHHHHHHHHHHHHcCceeecCcccccCCCCCcccC
Q 003578 161 LSRDEFTKRVWEWKEKYGGTITSQIKRLGASCDWTRERFTLDEQLSRAVVEAFIRLHEKGLIYQGSYMVNWSPNLQTAVS 240 (809)
Q Consensus 161 ~~~~~f~~~~~~~~~~~~~~~~~~l~~lgi~~Dw~~~~~T~d~~~~~~v~~~f~~L~~~Gliy~~~~~v~w~p~~~t~ls 240 (809)
++++|.+.+.+.+++|||.-++.+ |..++|...++.++.+|.++|++|.+...|++|...
T Consensus 146 ------------la~~y~~~f~~d~~~LnI~~p~~~---pratehi~~ii~~i~~Li~kG~aY~~~g~VYFdv~~----- 205 (557)
T PLN02946 146 ------------LSRRYCEEFLSDMAYLHCLPPSVE---PRVSDHIPQIIDMIKQILDNGCAYRVDGDVYFSVDK----- 205 (557)
T ss_pred ------------HHHHHHHHHHHHHHHCCCCCCCee---cCcchhHHHHHHHHHHHHHCCCEEEECCeEEEecCc-----
Confidence 457899999999999999844444 677799999999999999999999999999876531
Q ss_pred ccccccccCCCceEEEEEEecCCCeeEEEEecCCccccCCcEEEECCCCchhhhcccCeeecCCCCCCeeeEEecCCccc
Q 003578 241 DLEVEYSEEPGTLYYIKYRVAGRSDFLTIATTRPETLFGDVALAVNPQDEHYSQFIGMMAIVPMTYGRHVPIISDKYVDK 320 (809)
Q Consensus 241 d~Ev~~~~~~~~~~~~~f~~~~~~~~l~v~Tt~petl~~~~av~v~p~~~~y~~l~g~~~~~P~~~~~~vpi~~~~~V~~ 320 (809)
.+.|++|.|.....-.
T Consensus 206 ------------------------------------------------f~~YG~Ls~~~l~~l~---------------- 221 (557)
T PLN02946 206 ------------------------------------------------FPEYGKLSGRKLEDNR---------------- 221 (557)
T ss_pred ------------------------------------------------chhhhhcCCCChhHhh----------------
Confidence 2335555543321111
Q ss_pred cCCCCceeecCCCChhhHHHHHHhCCCceeecCCCCcccccccccCCCCHHHHHHHHHHHHHHCCCeeeeecccccCccc
Q 003578 321 EFGTGVLKISPGHDHNDYLLARKLGLPILNVMNKDGTLNEVAGLFRGLDRFEARKKLWSDLEETGLAVKKEPHTLRVPRS 400 (809)
Q Consensus 321 ~~GTG~v~~~P~h~~~D~~~~~~~~l~~~~~~~~~G~~~~~~g~~~G~~~~~a~~~i~~~L~~~g~~~~~~~~~~~~p~c 400 (809)
.|..+-...-..+|.||.+||..+ .
T Consensus 222 -~g~rv~~~~~K~np~DFaLWK~~k---------~--------------------------------------------- 246 (557)
T PLN02946 222 -AGERVAVDSRKKNPADFALWKAAK---------E--------------------------------------------- 246 (557)
T ss_pred -cCCCCCcccccCCccccceeccCC---------C---------------------------------------------
Confidence 122110011245777888775421 0
Q ss_pred ccCCCeeEEeeccceeeeccHHHHHHHHHHhcCCceEecchhHHHHHHHHhcCCceeeeccccccceeeEEEEcCCcccE
Q 003578 401 QRGGEVIEPLVSKQWFVTMEPLAEKALHAVEKGELTIMPERFEKIYNHWLSNIKDWCISRQLWWGHRIPVWYIVGKEEEY 480 (809)
Q Consensus 401 ~r~~~~i~~~~~~qwfl~~~~~~~~~~~~~~~~~~~~~P~~~~~~~~~~l~~l~Dw~ISRq~~WG~piP~~~~~~~~~~~ 480 (809)
|++. | ...||.--|-||++|-
T Consensus 247 --------------------------------ge~~-------------------W----~SPWG~GRPGWHIECS---- 267 (557)
T PLN02946 247 --------------------------------GEPF-------------------W----DSPWGPGRPGWHIECS---- 267 (557)
T ss_pred --------------------------------CCCC-------------------c----cCCCCCCCCcHHHHHH----
Confidence 0111 2 3469999999999761
Q ss_pred EEcCChhHHHHHHhhhcCCCccccccCCccceeecccCccceecCCCCCChhhhhhcCCCcEEEeeehhHHhHHHHHHHH
Q 003578 481 IVARNADEALEKAHQKYGKNVEIYQDPDVLDTWFSSALWPFSTLGWPDVSADDFKKFYPTTMLETGHDILFFWVARMVMM 560 (809)
Q Consensus 481 ~~~~~~~~~~~~~~~~~~~~~~~~~~~dvld~Wfds~~~~~~~~~~~~~~~~~~~~~~p~d~~~~G~Di~~~w~~~~~~~ 560 (809)
.+-...+| -+.|+|.+|.|.+|.|....++.
T Consensus 268 -------------------------------------aMs~~~lG------------~~~DIH~GG~DL~FPHHENEiAQ 298 (557)
T PLN02946 268 -------------------------------------AMSAAYLG------------HSFDIHGGGMDLVFPHHENEIAQ 298 (557)
T ss_pred -------------------------------------HHHHHHcC------------CCeeEeccccccCCCcccchHHH
Confidence 01000111 14699999999999999999999
Q ss_pred HHHhcCCCCceeEEEeeeEEccCCCcccccccCccChhhHHHhhCCchHHHHHhhCCCCCcccccHHHHHHHHHHHHHHH
Q 003578 561 GIEFTGSVPFSHVYLHGLIRDSQGRKMSKTLGNVIDPIDTIKEFGADALRFTISLGTAGQDLSLSIERLTANKAFTNKLW 640 (809)
Q Consensus 561 ~~~l~~~~Pf~~v~~hg~vld~~G~KMSKS~GN~I~p~dli~~ygaD~lR~~ll~~~~~~d~~fs~~~l~~~~~~~~kl~ 640 (809)
+.+..++ |+.++|+|..++..+|+|||||+||+|+++|++++||+|++|||+++++++++++|+++.+....+.+.++.
T Consensus 299 sea~~g~-~~a~yW~H~G~v~~~G~KMSKSlGN~itl~dll~~y~~dalR~~lLs~hyr~~l~fs~e~L~~a~~~l~~l~ 377 (557)
T PLN02946 299 SCAACCD-SNISYWIHNGFVTVDSEKMSKSLGNFFTIRQVIDLYHPLALRLFLLGTHYRSPINYSDVQLESASERIFYIY 377 (557)
T ss_pred HHHHhCC-CCCceeeEeeEEEeCCCCcCCcCCCcCCHHHHHHhcCccceeeeeeccCCCCCcEecHHHHHHHHHHHHHHH
Confidence 9888776 778899986555699999999999999999999999999999999999999999999999999888888888
Q ss_pred HHHHHHHHhCCCCCchhhHHHHhhhccchhhhhcCCCchhHHHHHHHHHHHHHHHHHh-hcCChHHHHHHHHHHHHHhhH
Q 003578 641 NAGKFILQNLPSQNDISRWEILLAYKFDEEECLCKAPLPECWVVSKLHMLIDTVTASY-DKYFFGDVGRETYDFFWSDFA 719 (809)
Q Consensus 641 N~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~~d~~il~~l~~~~~~v~~a~-e~~~f~~a~~~i~~f~~~~~~ 719 (809)
+++..+...+..... . ....+ .+..+...+..+.+.+.++| +++++..|+..|++++ ...
T Consensus 378 ~~~~~~~~~l~~~~~--------------~--~~~~~-~~~~~~~~~~~~~~~f~~Al~DDlntp~Al~~l~~~v--k~~ 438 (557)
T PLN02946 378 QTLHDCEESLQQHDS--------------T--FEKDS-VPPDTLNCINKFHDEFVTSMSDDLHTPVALAALSEPL--KTI 438 (557)
T ss_pred HHHHHHHHHhhhhcc--------------c--ccccc-cchhhHHHHHHHHHHHHHHHHhccChHHHHHHHHHHH--HHH
Confidence 887766433211000 0 00000 01112334556778899999 5899999999999998 356
Q ss_pred HHHHH
Q 003578 720 DWYIE 724 (809)
Q Consensus 720 n~Yi~ 724 (809)
|.+++
T Consensus 439 N~~~~ 443 (557)
T PLN02946 439 NDLLH 443 (557)
T ss_pred HHHhh
Confidence 77764
No 53
>PRK14535 cysS cysteinyl-tRNA synthetase; Provisional
Probab=100.00 E-value=5.1e-39 Score=363.67 Aligned_cols=341 Identities=18% Similarity=0.194 Sum_probs=259.4
Q ss_pred EEEeCCCCCCCCCCcchhhHHHHHHHHHHHHHHHCCCcccccCCCCCCCCchHHHHHHHHHHcCCCccccCHHHHHHHHH
Q 003578 92 FVISMPPPNVTGSLHMGHAMFVTLEDIMVRYHRMKGRPTLWLPGTDHAGIATQLVVEKMLAAEGIKRVELSRDEFTKRVW 171 (809)
Q Consensus 92 f~i~~~pPy~nG~lHiGH~~~~~~~Di~~Ry~rm~G~~V~~~~G~D~~Gl~~~~~~e~~~~~~g~~~~~~~~~~f~~~~~ 171 (809)
=+-++| |+|.+.+||||+++++..|+++||+|++||+|.|++|+|+||-+| .+.|+++|+++.+
T Consensus 250 ~mYvCG-PTVYd~~HIGHaRt~V~~DVL~R~Lr~~Gy~V~fV~NiTD~DDKI----I~~A~e~G~sp~e----------- 313 (699)
T PRK14535 250 RMYVCG-MTVYDYCHLGHARVMVVFDMIARWLRECGYPLTYVRNITDIDDKI----IARAAENGETIGE----------- 313 (699)
T ss_pred EEEecC-CcCCCCCcccchhHHHHHHHHHHHHHHcCCceEEEeCCcccchHH----HHHHHHcCCCHHH-----------
Confidence 345677 899999999999999999999999999999999999999999995 4556778998874
Q ss_pred HHHHHHHHHHHHHHHHhcccccCCCccccCChhhHHHHHHHHHHHHHcCceeecC-cccccCCCCCcccCccccccccCC
Q 003578 172 EWKEKYGGTITSQIKRLGASCDWTRERFTLDEQLSRAVVEAFIRLHEKGLIYQGS-YMVNWSPNLQTAVSDLEVEYSEEP 250 (809)
Q Consensus 172 ~~~~~~~~~~~~~l~~lgi~~Dw~~~~~T~d~~~~~~v~~~f~~L~~~Gliy~~~-~~v~w~p~~~t~lsd~Ev~~~~~~ 250 (809)
++++|.+.+.+.+++|||..+- +.|...+|...++.++.+|.++|++|++. ..|+||..+
T Consensus 314 -la~~y~~~F~~d~~~LnI~~p~---~~praTeHI~~ii~lI~~LidkG~AYe~~~gsVYFdV~~--------------- 374 (699)
T PRK14535 314 -LTARFIQAMHEDADALGVLRPD---IEPKATENIPQMIAMIETLIQNGKAYPAANGDVYYAVRE--------------- 374 (699)
T ss_pred -HHHHHHHHHHHHHHHcCCCCCc---EeeCccchHHHHHHHHHHHHHCCCEEEeCCCCEEEeccc---------------
Confidence 4578999999999999999883 34667799999999999999999999874 478877542
Q ss_pred CceEEEEEEecCCCeeEEEEecCCccccCCcEEEECCCCchhhhcccCeeecCCCCCCeeeEEecCCccccCCCCceeec
Q 003578 251 GTLYYIKYRVAGRSDFLTIATTRPETLFGDVALAVNPQDEHYSQFIGMMAIVPMTYGRHVPIISDKYVDKEFGTGVLKIS 330 (809)
Q Consensus 251 ~~~~~~~f~~~~~~~~l~v~Tt~petl~~~~av~v~p~~~~y~~l~g~~~~~P~~~~~~vpi~~~~~V~~~~GTG~v~~~ 330 (809)
.+.|++|.|.....- ..|..+-...
T Consensus 375 --------------------------------------f~~YG~LS~~~~~~l-----------------~~g~rve~d~ 399 (699)
T PRK14535 375 --------------------------------------FAAYGQLSGKSLDDL-----------------RAGERVEVDG 399 (699)
T ss_pred --------------------------------------ccccccccCCChHHh-----------------cCCCcccccc
Confidence 122444433221110 0111110001
Q ss_pred CCCChhhHHHHHHhCCCceeecCCCCcccccccccCCCCHHHHHHHHHHHHHHCCCeeeeecccccCcccccCCCeeEEe
Q 003578 331 PGHDHNDYLLARKLGLPILNVMNKDGTLNEVAGLFRGLDRFEARKKLWSDLEETGLAVKKEPHTLRVPRSQRGGEVIEPL 410 (809)
Q Consensus 331 P~h~~~D~~~~~~~~l~~~~~~~~~G~~~~~~g~~~G~~~~~a~~~i~~~L~~~g~~~~~~~~~~~~p~c~r~~~~i~~~ 410 (809)
-..++.||.+||... .
T Consensus 400 ~Krnp~DFaLWK~sk---------~------------------------------------------------------- 415 (699)
T PRK14535 400 FKRDPLDFVLWKAAK---------A------------------------------------------------------- 415 (699)
T ss_pred ccCCccccceeccCC---------C-------------------------------------------------------
Confidence 256777888776421 0
Q ss_pred eccceeeeccHHHHHHHHHHhcCCceEecchhHHHHHHHHhcCCceeeeccccccceeeEEEEcCCcccEEEcCChhHHH
Q 003578 411 VSKQWFVTMEPLAEKALHAVEKGELTIMPERFEKIYNHWLSNIKDWCISRQLWWGHRIPVWYIVGKEEEYIVARNADEAL 490 (809)
Q Consensus 411 ~~~qwfl~~~~~~~~~~~~~~~~~~~~~P~~~~~~~~~~l~~l~Dw~ISRq~~WG~piP~~~~~~~~~~~~~~~~~~~~~ 490 (809)
|++ -| ...||.-.|-||++|-
T Consensus 416 ----------------------Gep-------------------~W----~SPWG~GRPGWHIECS-------------- 436 (699)
T PRK14535 416 ----------------------GEP-------------------AW----ESPWGNGRPGWHIECS-------------- 436 (699)
T ss_pred ----------------------CCC-------------------Cc----cCCCCCCCCchHHHHH--------------
Confidence 010 12 3469999999999761
Q ss_pred HHHhhhcCCCccccccCCccceeecccCccceecCCCCCChhhhhhcCCCcEEEeeehhHHhHHHHHHHHHHHhcCCC--
Q 003578 491 EKAHQKYGKNVEIYQDPDVLDTWFSSALWPFSTLGWPDVSADDFKKFYPTTMLETGHDILFFWVARMVMMGIEFTGSV-- 568 (809)
Q Consensus 491 ~~~~~~~~~~~~~~~~~dvld~Wfds~~~~~~~~~~~~~~~~~~~~~~p~d~~~~G~Di~~~w~~~~~~~~~~l~~~~-- 568 (809)
.+....+| -+.|+|.+|.|.+|.|+-..++.+.+.+|+.
T Consensus 437 ---------------------------AMs~~~LG------------~~~DIHgGG~DLiFPHHENEiAQseA~~g~~~~ 477 (699)
T PRK14535 437 ---------------------------AMSENLFG------------DTFDIHGGGADLQFPHHENEIAQSVGATGHTCG 477 (699)
T ss_pred ---------------------------HHHHHHcC------------CcceeECCccccCCCCCccHHHHHHHhhCCCcc
Confidence 01111111 1368999999999999999999998887762
Q ss_pred -------------CceeEEEeeeEEccCCCcccccccCccChhhHHHhhCCchHHHHHhhCCCCCcccccHHHHHHHHHH
Q 003578 569 -------------PFSHVYLHGLIRDSQGRKMSKTLGNVIDPIDTIKEFGADALRFTISLGTAGQDLSLSIERLTANKAF 635 (809)
Q Consensus 569 -------------Pf~~v~~hg~vld~~G~KMSKS~GN~I~p~dli~~ygaD~lR~~ll~~~~~~d~~fs~~~l~~~~~~ 635 (809)
||.++|+|+.++..+|+|||||+||+|+|.+++++||+|++|||+++++++++++||++.++..++.
T Consensus 478 ~~~~~~~~~~~~~~~aryWmHnG~V~vdGeKMSKSLGN~it~~dlLe~ygpdalRl~lLsshYRspL~fS~e~Le~Ak~~ 557 (699)
T PRK14535 478 HHHAQTHHGQSIASHVKYWLHNGFIRVDGEKMSKSLGNFFTIREVLKQYDPEVVRFFILRAHYRSPLNYSDAHLDDAKGA 557 (699)
T ss_pred cccccccccccccccccEEEECCeEeeCCCccCCCCCCcCCHHHHHHhCCHHHHHHHHHcCCCCCCCCcCHHHHHHHHHH
Confidence 5899999988777999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHhCCCCCchhhHHHHhhhccchhhhhcCCCchhHHHHHHHHHHHHHHHHHh-hcCChHHHHHHHHHHH
Q 003578 636 TNKLWNAGKFILQNLPSQNDISRWEILLAYKFDEEECLCKAPLPECWVVSKLHMLIDTVTASY-DKYFFGDVGRETYDFF 714 (809)
Q Consensus 636 ~~kl~N~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~~d~~il~~l~~~~~~v~~a~-e~~~f~~a~~~i~~f~ 714 (809)
+++++++++.+.. . .. . ....+..+.+.+.++| +++++..|+..|.+++
T Consensus 558 l~Rl~~~l~~~~~-~---~~-------------------~-------~~~~l~~~~~~f~~AL~DDlntp~Ala~L~~lv 607 (699)
T PRK14535 558 LTRLYTTLKNTPA-A---EF-------------------M-------LSENVNDYTRRFYAAMNDDFGTVEAVAVLFELA 607 (699)
T ss_pred HHHHHHHHHhhhh-c---cc-------------------h-------hhhhHHHHHHHHHHHHhhccChHHHHHHHHHHH
Confidence 9999887654320 0 00 0 0113345667888888 5899999999999997
No 54
>PRK14534 cysS cysteinyl-tRNA synthetase; Provisional
Probab=100.00 E-value=8.2e-38 Score=348.31 Aligned_cols=352 Identities=17% Similarity=0.174 Sum_probs=258.9
Q ss_pred EEeCCCCCCCCCCcchhhHHHHHHHHHHHHHHHCCCcccc---------cCCC-CCCCCchHHHHHHHHHHcCCCccccC
Q 003578 93 VISMPPPNVTGSLHMGHAMFVTLEDIMVRYHRMKGRPTLW---------LPGT-DHAGIATQLVVEKMLAAEGIKRVELS 162 (809)
Q Consensus 93 ~i~~~pPy~nG~lHiGH~~~~~~~Di~~Ry~rm~G~~V~~---------~~G~-D~~Gl~~~~~~e~~~~~~g~~~~~~~ 162 (809)
+-++| |+|...+||||+++++..|+++||+|++|++|.| ++|+ |+||-+ +.+.|+++|+++.+
T Consensus 24 mY~CG-pTVYd~~HiGh~r~~v~~Dvl~R~l~~~G~~V~~v~NiTDIghltg~~D~gddK----Ii~~A~~~g~~~~e-- 96 (481)
T PRK14534 24 VYACG-PTVYNYAHIGNFRTYIFEDLLIKSLRLLKYNVNYAMNITDIGHLTGDFDDGEDK----VVKAARERGLTVYE-- 96 (481)
T ss_pred EEeCC-CCCCCCCCccchhHHHHHHHHHHHHHHcCCceEEEEeccccccccCCccCCCcH----HHHHHHHcCCCHHH--
Confidence 44577 8999999999999999999999999999999999 7999 555555 45566788999874
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhccccc-CCCccccCChhhHHHHHHHHHHHHHcCceeecCcccccCCCCCcccCc
Q 003578 163 RDEFTKRVWEWKEKYGGTITSQIKRLGASCD-WTRERFTLDEQLSRAVVEAFIRLHEKGLIYQGSYMVNWSPNLQTAVSD 241 (809)
Q Consensus 163 ~~~f~~~~~~~~~~~~~~~~~~l~~lgi~~D-w~~~~~T~d~~~~~~v~~~f~~L~~~Gliy~~~~~v~w~p~~~t~lsd 241 (809)
++++|.+.+.+.+++|||..| +.+ | .++|...++.++.+|.++|++|.....|++|+.+-
T Consensus 97 ----------~a~~~~~~f~~d~~~Lni~~~~~~p---~-atehi~~~i~~i~~L~~kG~aY~~~~~vyFdv~~~----- 157 (481)
T PRK14534 97 ----------ISRFFTEAFFDDCKKLNIVYPDKVL---V-ASEYIPIMIEVVKVLEENGFTYFVNGNVYFDTSCF----- 157 (481)
T ss_pred ----------HHHHHHHHHHHHHHHcCCCCCceec---C-ccchHHHHHHHHHHHHHCCCEEEECCeEEEecccc-----
Confidence 457899999999999999998 333 3 57999999999999999999999999999886531
Q ss_pred cccccccCCCceEEEEEEecCCCeeEEEEecCCccccCCcEEEECCCCchhhhcccCeeecCCCCCCeeeEEecCCcccc
Q 003578 242 LEVEYSEEPGTLYYIKYRVAGRSDFLTIATTRPETLFGDVALAVNPQDEHYSQFIGMMAIVPMTYGRHVPIISDKYVDKE 321 (809)
Q Consensus 242 ~Ev~~~~~~~~~~~~~f~~~~~~~~l~v~Tt~petl~~~~av~v~p~~~~y~~l~g~~~~~P~~~~~~vpi~~~~~V~~~ 321 (809)
+.|++|.|..... +.
T Consensus 158 ------------------------------------------------~~YG~ls~~~l~~-----------------l~ 172 (481)
T PRK14534 158 ------------------------------------------------KSYGQMAGINLND-----------------FK 172 (481)
T ss_pred ------------------------------------------------cchhhhcCCCHHH-----------------Hh
Confidence 1233333322111 00
Q ss_pred --CCCCceeec-CCCChhhHHHHHHhCCCceeecCCCCcccccccccCCCCHHHHHHHHHHHHHHCCCeeeeecccccCc
Q 003578 322 --FGTGVLKIS-PGHDHNDYLLARKLGLPILNVMNKDGTLNEVAGLFRGLDRFEARKKLWSDLEETGLAVKKEPHTLRVP 398 (809)
Q Consensus 322 --~GTG~v~~~-P~h~~~D~~~~~~~~l~~~~~~~~~G~~~~~~g~~~G~~~~~a~~~i~~~L~~~g~~~~~~~~~~~~p 398 (809)
.|++ |... -..++.||.+|+..
T Consensus 173 ~~~~~~-v~~~~~K~np~DFaLWK~~------------------------------------------------------ 197 (481)
T PRK14534 173 DMSVSR-VEIDKSKRNKSDFVLWFTN------------------------------------------------------ 197 (481)
T ss_pred hhccCc-CCcccCCCCcccchhcCcC------------------------------------------------------
Confidence 0111 0001 13344455444210
Q ss_pred ccccCCCeeEEeeccceeeeccHHHHHHHHHHhcCCceEecchhHHHHHHHHhcCCceeeeccccccceeeEEEEcCCcc
Q 003578 399 RSQRGGEVIEPLVSKQWFVTMEPLAEKALHAVEKGELTIMPERFEKIYNHWLSNIKDWCISRQLWWGHRIPVWYIVGKEE 478 (809)
Q Consensus 399 ~c~r~~~~i~~~~~~qwfl~~~~~~~~~~~~~~~~~~~~~P~~~~~~~~~~l~~l~Dw~ISRq~~WG~piP~~~~~~~~~ 478 (809)
.++++..+++...||.--|-||+++-
T Consensus 198 ----------------------------------------------------~~~~~~~~~w~spWG~GrPgWHiECs-- 223 (481)
T PRK14534 198 ----------------------------------------------------SKFKDQEMKWDSPWGFGYPSWHLECA-- 223 (481)
T ss_pred ----------------------------------------------------CcCCCCCCeecCCCCCcCCcHHHHHH--
Confidence 02345556778889999999998751
Q ss_pred cEEEcCChhHHHHHHhhhcCCCccccccCCccceeecccCccceecCCCCCChhhhhhcC-CCcEEEeeehhHHhHHHHH
Q 003578 479 EYIVARNADEALEKAHQKYGKNVEIYQDPDVLDTWFSSALWPFSTLGWPDVSADDFKKFY-PTTMLETGHDILFFWVARM 557 (809)
Q Consensus 479 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dvld~Wfds~~~~~~~~~~~~~~~~~~~~~~-p~d~~~~G~Di~~~w~~~~ 557 (809)
. + ..++++ ..|+|.+|.|++|+|....
T Consensus 224 --------------------------------------a-m-------------~~~~lg~~~DIH~GG~DliFPHHene 251 (481)
T PRK14534 224 --------------------------------------A-M-------------NLEYFKSTLDIHLGGVDHIGVHHINE 251 (481)
T ss_pred --------------------------------------H-H-------------HHHHcCCcceEEecccccCCCcchhH
Confidence 0 0 001111 3689999999999999999
Q ss_pred HHHHHHhcCCCCceeEEEeeeEEccCCCcccccccCccChhhHHHh-hCCchHHHHHhhCCCCCcccccHHHHHHHHHHH
Q 003578 558 VMMGIEFTGSVPFSHVYLHGLIRDSQGRKMSKTLGNVIDPIDTIKE-FGADALRFTISLGTAGQDLSLSIERLTANKAFT 636 (809)
Q Consensus 558 ~~~~~~l~~~~Pf~~v~~hg~vld~~G~KMSKS~GN~I~p~dli~~-ygaD~lR~~ll~~~~~~d~~fs~~~l~~~~~~~ 636 (809)
++++.+.+|+ ||.++|+|+.++..+|+|||||+||+|++.|++++ |+++++||++++++++++++||++.|+.+++.+
T Consensus 252 ~Aqs~a~~g~-~~~~~W~H~g~l~~~g~KMSKSlGN~i~l~dll~~~~~~~alR~~lls~~yr~~l~Fs~e~l~~a~~~~ 330 (481)
T PRK14534 252 IAIAECYLNK-KWCDMFVHGEFLIMEYEKMSKSNNNFITIKDLEDQGFSPLDFRYFCLTAHYRTQLKFTFNNLKACKIAR 330 (481)
T ss_pred HHHHhhhcCC-CcceEEEEecEEEecCceecccCCCcccHHHHHhcCCChhHHHHHHHhCCCCCCCCCCHHHHHHHHHHH
Confidence 9999888876 78999999988789999999999999999999997 999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHhCCCCCchhhHHHHhhhccchhhhhcCCCchhHHHHHHHHHHHHHHHHHh-hcCChHHHHHHHHHHH
Q 003578 637 NKLWNAGKFILQNLPSQNDISRWEILLAYKFDEEECLCKAPLPECWVVSKLHMLIDTVTASY-DKYFFGDVGRETYDFF 714 (809)
Q Consensus 637 ~kl~N~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~~d~~il~~l~~~~~~v~~a~-e~~~f~~a~~~i~~f~ 714 (809)
+++++.++.+...+..... . ... .. ... ........+.+.+.++| ++++++.|+..|.+++
T Consensus 331 ~~~~~~~~~~~~~~~~~~~--~-----------~~~-~~-~~~--~~~~~~~~~~~~f~~Al~DDlNtp~Al~~l~~~~ 392 (481)
T PRK14534 331 ENMLNKLTYFYSSLDQFDL--N-----------LLN-KD-LEN--IEFSLEKEYYDSFLEKIAFDLNIPQGLALLWDII 392 (481)
T ss_pred HHHHHHHHHHHHhhhhccc--c-----------ccc-cc-ccc--chhhhHHHHHHHHHHHHhhcCChHHHHHHHHHHH
Confidence 9998877655332211000 0 000 00 000 00011234556788888 5899999999999997
No 55
>COG0215 CysS Cysteinyl-tRNA synthetase [Translation, ribosomal structure and biogenesis]
Probab=100.00 E-value=1.5e-34 Score=314.67 Aligned_cols=341 Identities=22% Similarity=0.294 Sum_probs=257.4
Q ss_pred EEeCCCCCCCCCCcchhhHHHHHHHHHHHHHHHCCCcccccCCCCCCCCchHHHHHHHHHHcCCCccccCHHHHHHHHHH
Q 003578 93 VISMPPPNVTGSLHMGHAMFVTLEDIMVRYHRMKGRPTLWLPGTDHAGIATQLVVEKMLAAEGIKRVELSRDEFTKRVWE 172 (809)
Q Consensus 93 ~i~~~pPy~nG~lHiGH~~~~~~~Di~~Ry~rm~G~~V~~~~G~D~~Gl~~~~~~e~~~~~~g~~~~~~~~~~f~~~~~~ 172 (809)
+-++| |+|....||||++++|.-|++.||++..||.|.|+..+-+ |.-++.+.|.+.|.+.. +
T Consensus 25 mYvCG-pTVYd~~HIGhaRt~V~fDvl~R~L~~~Gy~V~yV~NiTD----IDDKIi~rA~~~g~~~~------------e 87 (464)
T COG0215 25 MYVCG-PTVYDYAHIGHARTYVVFDVLRRYLRYLGYKVTYVRNITD----IDDKIINRAREEGLSIR------------E 87 (464)
T ss_pred EEecC-CccCCccccccCcceehHHHHHHHHHHhCCeEEEEecccc----ccHHHHHHHHHhCCCHH------------H
Confidence 34567 8999999999999999999999999999999999876644 23346677788888765 4
Q ss_pred HHHHHHHHHHHHHHHhccc-ccCCCccccCChhhHHHHHHHHHHHHHcCceeec-CcccccCCCCCcccCccccccccCC
Q 003578 173 WKEKYGGTITSQIKRLGAS-CDWTRERFTLDEQLSRAVVEAFIRLHEKGLIYQG-SYMVNWSPNLQTAVSDLEVEYSEEP 250 (809)
Q Consensus 173 ~~~~~~~~~~~~l~~lgi~-~Dw~~~~~T~d~~~~~~v~~~f~~L~~~Gliy~~-~~~v~w~p~~~t~lsd~Ev~~~~~~ 250 (809)
++++|++.+.+++..||+. .|. .+..| +|...+.++..+|.++|++|.. ...|+++...
T Consensus 88 v~~~~i~~f~~D~~aL~v~~p~~-~PraT---e~I~~iI~~I~~LiekG~AY~~~~G~VYFdv~~--------------- 148 (464)
T COG0215 88 VAERYIAAFFEDMDALNVLPPDI-EPRAT---EHIDEIIEFIEKLIEKGYAYVADDGDVYFDVSK--------------- 148 (464)
T ss_pred HHHHHHHHHHHHHHHhCCCCCcc-cCcHh---hCHHHHHHHHHHHHHCCceEEecCCcEEEeccc---------------
Confidence 5689999999999999995 452 22334 7888999999999999999998 5688764321
Q ss_pred CceEEEEEEecCCCeeEEEEecCCccccCCcEEEECCCCchhhhcccCeeecCCCCCCeeeEEecCCccccCCCCceeec
Q 003578 251 GTLYYIKYRVAGRSDFLTIATTRPETLFGDVALAVNPQDEHYSQFIGMMAIVPMTYGRHVPIISDKYVDKEFGTGVLKIS 330 (809)
Q Consensus 251 ~~~~~~~f~~~~~~~~l~v~Tt~petl~~~~av~v~p~~~~y~~l~g~~~~~P~~~~~~vpi~~~~~V~~~~GTG~v~~~ 330 (809)
.+.|++|.|..-..-+.. |..+-...
T Consensus 149 --------------------------------------f~~YG~LS~~~~le~l~~----------------gar~~~~~ 174 (464)
T COG0215 149 --------------------------------------FKDYGKLSGRDSLEELQA----------------GARVEVDE 174 (464)
T ss_pred --------------------------------------chhhHhhcCCCChhHHhh----------------cccccccc
Confidence 234555554321111100 11110011
Q ss_pred CCCChhhHHHHHHhCCCceeecCCCCcccccccccCCCCHHHHHHHHHHHHHHCCCeeeeecccccCcccccCCCeeEEe
Q 003578 331 PGHDHNDYLLARKLGLPILNVMNKDGTLNEVAGLFRGLDRFEARKKLWSDLEETGLAVKKEPHTLRVPRSQRGGEVIEPL 410 (809)
Q Consensus 331 P~h~~~D~~~~~~~~l~~~~~~~~~G~~~~~~g~~~G~~~~~a~~~i~~~L~~~g~~~~~~~~~~~~p~c~r~~~~i~~~ 410 (809)
-..+|.||.+||..+
T Consensus 175 ~Krnp~DFvLWK~sk----------------------------------------------------------------- 189 (464)
T COG0215 175 EKRNPLDFVLWKAAK----------------------------------------------------------------- 189 (464)
T ss_pred ccCCchhheeeccCC-----------------------------------------------------------------
Confidence 145677777775421
Q ss_pred eccceeeeccHHHHHHHHHHhcCCceEecchhHHHHHHHHhcCCceeeeccccccceeeEEEEcCCcccEEEcCChhHHH
Q 003578 411 VSKQWFVTMEPLAEKALHAVEKGELTIMPERFEKIYNHWLSNIKDWCISRQLWWGHRIPVWYIVGKEEEYIVARNADEAL 490 (809)
Q Consensus 411 ~~~qwfl~~~~~~~~~~~~~~~~~~~~~P~~~~~~~~~~l~~l~Dw~ISRq~~WG~piP~~~~~~~~~~~~~~~~~~~~~ 490 (809)
.|+.. | ...||.--|-||++|-
T Consensus 190 ---------------------~gEp~-------------------W----~SPWG~GRPGWHIECS-------------- 211 (464)
T COG0215 190 ---------------------PGEPS-------------------W----DSPWGKGRPGWHIECS-------------- 211 (464)
T ss_pred ---------------------CCCCC-------------------C----CCCCCCCCCchhHHHH--------------
Confidence 01111 2 5679999999999761
Q ss_pred HHHhhhcCCCccccccCCccceeecccCccceecCCCCCChhhhhhcCCCcEEEeeehhHHhHHHHHHHHHHHhcCCCCc
Q 003578 491 EKAHQKYGKNVEIYQDPDVLDTWFSSALWPFSTLGWPDVSADDFKKFYPTTMLETGHDILFFWVARMVMMGIEFTGSVPF 570 (809)
Q Consensus 491 ~~~~~~~~~~~~~~~~~dvld~Wfds~~~~~~~~~~~~~~~~~~~~~~p~d~~~~G~Di~~~w~~~~~~~~~~l~~~~Pf 570 (809)
.+-...+| + ..|+|.+|.|.+|.|+-.-++.+.+.+|..||
T Consensus 212 ---------------------------aM~~~~LG------~------~~DIHgGG~DLiFPHHENEiAQsea~~g~~~~ 252 (464)
T COG0215 212 ---------------------------AMSTKYLG------E------TFDIHGGGSDLIFPHHENEIAQSEAATGVKPF 252 (464)
T ss_pred ---------------------------HHHHHHhC------C------CcceecCcccccCCCcccHHHHHHhhhCCCcc
Confidence 11111222 1 25899999999999999999999999997799
Q ss_pred eeEEEeeeEEccCCCcccccccCccChhhHHHhhCCchHHHHHhhCCCCCcccccHHHHHHHHHHHHHHHHHHHHHHHhC
Q 003578 571 SHVYLHGLIRDSQGRKMSKTLGNVIDPIDTIKEFGADALRFTISLGTAGQDLSLSIERLTANKAFTNKLWNAGKFILQNL 650 (809)
Q Consensus 571 ~~v~~hg~vld~~G~KMSKS~GN~I~p~dli~~ygaD~lR~~ll~~~~~~d~~fs~~~l~~~~~~~~kl~N~~~~~~~~l 650 (809)
.++|+|..++..+|+|||||+||++++.|++++|++.+|||+|++++|+++++||++.|+.+++.+.+|.|+++.+....
T Consensus 253 a~yWmH~G~l~i~geKMSKSLGNfiti~d~l~~~~p~~lR~~lls~HYR~pl~fsee~L~~A~~~l~rl~~~~~~~~~~~ 332 (464)
T COG0215 253 AKYWMHNGFLNIDGEKMSKSLGNFITVRDLLKKYDPEVLRLFLLSSHYRSPLDFSEELLEEAKKALERLYNALRRLRDLA 332 (464)
T ss_pred eeEeEEcceeeecCcCcccccCCeeEHHHHHhhcCHHHHHHHHHHHHhCCccccCHHHHHHHHHHHHHHHHHHHHHHhhc
Confidence 99999999889999999999999999999999999999999999999999999999999999999999999987765322
Q ss_pred CCCCchhhHHHHhhhccchhhhhcCCCchhHHHHHHHHHHHHHHHHHh-hcCChHHHHHHHHHHH
Q 003578 651 PSQNDISRWEILLAYKFDEEECLCKAPLPECWVVSKLHMLIDTVTASY-DKYFFGDVGRETYDFF 714 (809)
Q Consensus 651 ~~~~~~~~~~~~~~~~~~~~~~~~~l~~~d~~il~~l~~~~~~v~~a~-e~~~f~~a~~~i~~f~ 714 (809)
.... .. .+.+...++.++| +++++..|+..+.+++
T Consensus 333 ~~~~---------------------~~--------~~~~~~~~f~~al~DDfnt~~al~~l~~l~ 368 (464)
T COG0215 333 GDAE---------------------LA--------DLKEFEARFREALDDDFNTPKALAVLFELA 368 (464)
T ss_pred cccc---------------------cc--------hhHHHHHHHHHHHHhccCcHHHHHHHHHHH
Confidence 1100 00 3445666788888 5899999999999997
No 56
>cd00672 CysRS_core catalytic core domain of cysteinyl tRNA synthetase. Cysteinyl tRNA synthetase (CysRS) catalytic core domain. This class I enzyme is a monomer which aminoacylates the 2'-OH of the nucleotide at the 3' of the appropriate tRNA. The core domain is based on the Rossman fold and is responsible for the ATP-dependent formation of the enzyme bound aminoacyl-adenylate. It contains the characteristic class I HIGH and KMSKS motifs, which are involved in ATP binding.
Probab=100.00 E-value=8.4e-34 Score=288.33 Aligned_cols=86 Identities=28% Similarity=0.413 Sum_probs=82.0
Q ss_pred CCcEEEeeehhHHhHHHHHHHHHHHhcCCCCceeEEEeeeEEccCCCcccccccCccChhhHHHhhCCchHHHHHhhCCC
Q 003578 539 PTTMLETGHDILFFWVARMVMMGIEFTGSVPFSHVYLHGLIRDSQGRKMSKTLGNVIDPIDTIKEFGADALRFTISLGTA 618 (809)
Q Consensus 539 p~d~~~~G~Di~~~w~~~~~~~~~~l~~~~Pf~~v~~hg~vld~~G~KMSKS~GN~I~p~dli~~ygaD~lR~~ll~~~~ 618 (809)
|.|++.+|.|++++|..++++++.++.|+ |+.++|+|+.+++.+|+|||||+||+|+|.|++++||+|++|||+++.++
T Consensus 128 ~~dih~~G~Dl~fpH~~~~~a~~~a~~g~-~~~~~~~h~~~v~~~g~KMSKs~Gn~v~~~dll~~~~~da~R~~~l~~~~ 206 (213)
T cd00672 128 TFDIHGGGVDLIFPHHENEIAQSEAATGK-PFARYWLHTGHLTIDGEKMSKSLGNFITVRDALKKYDPEVLRLALLSSHY 206 (213)
T ss_pred CccEEeecCCCCcChHHHHHHHHHHHhCC-CCCcEEEEEEEEeccCcchhhcCCCccCHHHHHHHcCHHHHHHHHHhCCc
Confidence 46899999999999999999999999998 89999999999899999999999999999999999999999999999999
Q ss_pred CCccccc
Q 003578 619 GQDLSLS 625 (809)
Q Consensus 619 ~~d~~fs 625 (809)
.++++|+
T Consensus 207 ~~~l~f~ 213 (213)
T cd00672 207 RSPLDFS 213 (213)
T ss_pred CCCCCCC
Confidence 9999986
No 57
>PRK01611 argS arginyl-tRNA synthetase; Reviewed
Probab=100.00 E-value=2e-31 Score=306.97 Aligned_cols=142 Identities=20% Similarity=0.259 Sum_probs=111.2
Q ss_pred HHHHHHHHHhcCCCCCCCCCCCCCEEEeCCCCCCCCCCcchhhHHHHHHHHHHHHHHHCCCcccccCCCCCCCCchHHHH
Q 003578 68 EERIYNWWESQGYFKPNFERGSDPFVISMPPPNVTGSLHMGHAMFVTLEDIMVRYHRMKGRPTLWLPGTDHAGIATQLVV 147 (809)
Q Consensus 68 E~~~~~~W~~~~~f~~~~~~~~~~f~i~~~pPy~nG~lHiGH~~~~~~~Di~~Ry~rm~G~~V~~~~G~D~~Gl~~~~~~ 147 (809)
.+.....=+....|.......+++++|..++|||||++||||+++.+++|+++|++|+.||+|.++.|+|++|.++...+
T Consensus 89 ~~~~~~~~~~~~~~g~~~~~~~~~v~Ie~~spnp~g~lHiGH~R~~iigD~laR~lr~~G~~V~~~~~i~D~G~qi~~~a 168 (507)
T PRK01611 89 AELVLAILEAGERYGRSDIGKGKKVVVEYVSANPTGPLHVGHLRSAVIGDALARILEFAGYDVTREYYVNDAGTQIGMLI 168 (507)
T ss_pred HHHHHHHHhchhhcCCCcCCCCCEEEEEecCCCCCCCCcCCchHHHHHHHHHHHHHHHcCCcEEEEeeeCCccHHHHHHH
Confidence 33343332323467654433467899999999999999999999999999999999999999999999999999865444
Q ss_pred HHHHHHcCCCccccCHHHHHHHHHHHHHHHHHHHHHHHHHhccccc-CCCccccCChhhHHHHHHHHHHHHHcCcee-ec
Q 003578 148 EKMLAAEGIKRVELSRDEFTKRVWEWKEKYGGTITSQIKRLGASCD-WTRERFTLDEQLSRAVVEAFIRLHEKGLIY-QG 225 (809)
Q Consensus 148 e~~~~~~g~~~~~~~~~~f~~~~~~~~~~~~~~~~~~l~~lgi~~D-w~~~~~T~d~~~~~~v~~~f~~L~~~Gliy-~~ 225 (809)
+.. +. ....+++.+.+.+++++++||+.+| |.+ +.+..+...+++++.+|.++|++| +.
T Consensus 169 ~~~----~~------------~~~~~~~~~~~~~~~~l~~LgI~~D~~~~---es~~~~~~~~~~~~~~L~~~G~~y~~~ 229 (507)
T PRK01611 169 ASL----EL------------LWRKAVDISLDEIKEDLDRLGVHFDVWFS---ESELYYNGKVDEVVEDLKEKGLLYVES 229 (507)
T ss_pred HHH----HH------------HHHHHHHHHHHHHHHHHHHcCCeeeEEee---cCcchhcchHHHHHHHHHHCCCEEEee
Confidence 321 11 2235578899999999999999999 665 555666778999999999999999 65
Q ss_pred Ccc
Q 003578 226 SYM 228 (809)
Q Consensus 226 ~~~ 228 (809)
...
T Consensus 230 ~Ga 232 (507)
T PRK01611 230 DGA 232 (507)
T ss_pred CCc
Confidence 544
No 58
>KOG2007 consensus Cysteinyl-tRNA synthetase [Translation, ribosomal structure and biogenesis]
Probab=99.97 E-value=7.1e-30 Score=272.96 Aligned_cols=378 Identities=21% Similarity=0.232 Sum_probs=278.0
Q ss_pred CCCCCCCCCCCCEEEeCCCCCCCCCCcchhhHHHHHHHHHHHHHH-HCCCcccccCCCCCCCCchHHHHHHHHHH--cCC
Q 003578 80 YFKPNFERGSDPFVISMPPPNVTGSLHMGHAMFVTLEDIMVRYHR-MKGRPTLWLPGTDHAGIATQLVVEKMLAA--EGI 156 (809)
Q Consensus 80 ~f~~~~~~~~~~f~i~~~pPy~nG~lHiGH~~~~~~~Di~~Ry~r-m~G~~V~~~~G~D~~Gl~~~~~~e~~~~~--~g~ 156 (809)
.|-+... ++-..++ +| |++...-|||||++|+--||+.|+.+ .-||+|.|++++-+.-=. +.+.|++ -+.
T Consensus 47 ~fip~~~-~~v~wY~-CG-pTvYD~SHmGHArsYVsfDIlrRiL~dyfgy~V~~vmNiTDVDDK----II~RAr~~~m~e 119 (586)
T KOG2007|consen 47 VFIPNNG-NKVTWYI-CG-PTVYDSSHMGHARSYVSFDILRRILRDYFGYDVTFVMNITDVDDK----IIKRARKEEMGE 119 (586)
T ss_pred eeeeCCC-CeEEEEE-ec-CcccchhhhhhhhhhhhHHHHHHHHHHHcCcceEEEecccchhHH----HHHHhhhhhhcc
Confidence 4555432 2233444 55 79999999999999999999999999 999999999998663322 3343431 122
Q ss_pred CccccCHHHHHHHHHHHHHHHHHHHHHHHHHhcccccCCCccccCChhhHHHHHHHHHHHHHcCceeecCcccccCCCCC
Q 003578 157 KRVELSRDEFTKRVWEWKEKYGGTITSQIKRLGASCDWTRERFTLDEQLSRAVVEAFIRLHEKGLIYQGSYMVNWSPNLQ 236 (809)
Q Consensus 157 ~~~~~~~~~f~~~~~~~~~~~~~~~~~~l~~lgi~~Dw~~~~~T~d~~~~~~v~~~f~~L~~~Gliy~~~~~v~w~p~~~ 236 (809)
.+..+. +... .|.+.+.++|.+|++--.=-. |-=.+|...+..+..++.++|+.|.-...|+++..-
T Consensus 120 ~~~~l~-----~~F~----~~e~eF~~DM~~LnvLpPtv~---tRVSeyvp~II~fIqkIIdnG~aY~~dGsVYFdv~k- 186 (586)
T KOG2007|consen 120 KPLSLS-----ERFC----YYEEEFLQDMAALNVLPPTVQ---TRVSEYVPQIIKFIQKIIDNGYAYAVDGSVYFDVDK- 186 (586)
T ss_pred chhhHH-----HHHH----HHHHHHHHHHHHhCCCCCccc---chhhhchHHHHHHHHHHHhCCceeeeCCcEEEeccc-
Confidence 332221 1111 456778899999998776333 444588888999999999999999999999865321
Q ss_pred cccCccccccccCCCceEEEEEEecCCCeeEEEEecCCccccCCcEEEECCCCchhhhcccCeeecCCCCCCeeeEEecC
Q 003578 237 TAVSDLEVEYSEEPGTLYYIKYRVAGRSDFLTIATTRPETLFGDVALAVNPQDEHYSQFIGMMAIVPMTYGRHVPIISDK 316 (809)
Q Consensus 237 t~lsd~Ev~~~~~~~~~~~~~f~~~~~~~~l~v~Tt~petl~~~~av~v~p~~~~y~~l~g~~~~~P~~~~~~vpi~~~~ 316 (809)
| ...|.+|+|..=.
T Consensus 187 ---------------------f------------------------------~~~YgKL~G~~~~--------------- 200 (586)
T KOG2007|consen 187 ---------------------F------------------------------PHSYGKLVGQRKN--------------- 200 (586)
T ss_pred ---------------------c------------------------------cchhhhhcCchhh---------------
Confidence 0 0125555554311
Q ss_pred CccccCCCCceeecCCCChhhHHHHHHhCCCceeecCCCCcccccccccCCCCHHHHHHHHHHHHHHCCCeeeeeccccc
Q 003578 317 YVDKEFGTGVLKISPGHDHNDYLLARKLGLPILNVMNKDGTLNEVAGLFRGLDRFEARKKLWSDLEETGLAVKKEPHTLR 396 (809)
Q Consensus 317 ~V~~~~GTG~v~~~P~h~~~D~~~~~~~~l~~~~~~~~~G~~~~~~g~~~G~~~~~a~~~i~~~L~~~g~~~~~~~~~~~ 396 (809)
...|.|..-..-.-.++||++||..+
T Consensus 201 ---~~~gEg~l~ds~KR~p~DFALWKAsK--------------------------------------------------- 226 (586)
T KOG2007|consen 201 ---LQEGEGVLSDSRKRSPADFALWKASK--------------------------------------------------- 226 (586)
T ss_pred ---cccCcCccccccCCChhhhhhhhhcC---------------------------------------------------
Confidence 11133433233445788999987532
Q ss_pred CcccccCCCeeEEeeccceeeeccHHHHHHHHHHhcCCceEecchhHHHHHHHHhcCCceeeeccccccceeeEEEEcCC
Q 003578 397 VPRSQRGGEVIEPLVSKQWFVTMEPLAEKALHAVEKGELTIMPERFEKIYNHWLSNIKDWCISRQLWWGHRIPVWYIVGK 476 (809)
Q Consensus 397 ~p~c~r~~~~i~~~~~~qwfl~~~~~~~~~~~~~~~~~~~~~P~~~~~~~~~~l~~l~Dw~ISRq~~WG~piP~~~~~~~ 476 (809)
.|+.. | ...||.--|-||++|-
T Consensus 227 -----------------------------------~gEP~-------------------W----eSPWG~GRPGWHIECS 248 (586)
T KOG2007|consen 227 -----------------------------------PGEPS-------------------W----ESPWGKGRPGWHIECS 248 (586)
T ss_pred -----------------------------------CCCCC-------------------C----CCCCCCCCCCceeeeH
Confidence 11211 1 3479999999999761
Q ss_pred cccEEEcCChhHHHHHHhhhcCCCccccccCCccceeecccCccceecCCCCCChhhhhhcCCCcEEEeeehhHHhHHHH
Q 003578 477 EEEYIVARNADEALEKAHQKYGKNVEIYQDPDVLDTWFSSALWPFSTLGWPDVSADDFKKFYPTTMLETGHDILFFWVAR 556 (809)
Q Consensus 477 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dvld~Wfds~~~~~~~~~~~~~~~~~~~~~~p~d~~~~G~Di~~~w~~~ 556 (809)
+ +.-..+| ...|+|-+|.|.-|.|+-.
T Consensus 249 --------------------------------a---------Mas~~lG------------~~lDIH~GG~DL~FPHHeN 275 (586)
T KOG2007|consen 249 --------------------------------A---------MASAILG------------SQLDIHGGGIDLAFPHHEN 275 (586)
T ss_pred --------------------------------H---------HHHHhhc------------cccceecCcccccCCCccc
Confidence 0 0001111 1268999999999999999
Q ss_pred HHHHHHHhcCCCCceeEEEeeeEEccCCCcccccccCccChhhHHHhhCCchHHHHHhhCCCCCcccccHHHHHHHHHHH
Q 003578 557 MVMMGIEFTGSVPFSHVYLHGLIRDSQGRKMSKTLGNVIDPIDTIKEFGADALRFTISLGTAGQDLSLSIERLTANKAFT 636 (809)
Q Consensus 557 ~~~~~~~l~~~~Pf~~v~~hg~vld~~G~KMSKS~GN~I~p~dli~~ygaD~lR~~ll~~~~~~d~~fs~~~l~~~~~~~ 636 (809)
-++.+.+.....++.++|+|...+..+|+|||||++|+|++.+++++|.+++||+++++..++++++||.+.|..+..+.
T Consensus 276 EiAQ~eA~~~~~~wVnYflHtGhL~i~g~KMSKSLkNFiTIke~Lk~~sp~qLRl~fl~~~wr~~ldYs~s~m~~a~q~e 355 (586)
T KOG2007|consen 276 EIAQSEAAFDDSQWVNYFLHTGHLTINGEKMSKSLKNFITIKEALKKYSPRQLRLAFLLHQWRSPLDYSDSTMEQALQLE 355 (586)
T ss_pred HHHHHHHHhcCCccceeEEEcCeeeeccchhhhhhccceeHHHHHHhcCHHHHHHHHHHHHhcCcCCchHHHHHHHHHHH
Confidence 99999998888889999999888889999999999999999999999999999999999999999999999999988888
Q ss_pred HHHHHHHHHHHHhCCCCCchhhHHHHhhhccchhhhhcCCCchhHHHHHHHHHHHHHHHHHh-hcCChHHHHHHHHHHHH
Q 003578 637 NKLWNAGKFILQNLPSQNDISRWEILLAYKFDEEECLCKAPLPECWVVSKLHMLIDTVTASY-DKYFFGDVGRETYDFFW 715 (809)
Q Consensus 637 ~kl~N~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~~d~~il~~l~~~~~~v~~a~-e~~~f~~a~~~i~~f~~ 715 (809)
..+.|++.-+........ .++.+.+.+..+...+.....+|+.++ ++++...+++.+.+++
T Consensus 356 ~~~~~ff~~~~al~~~~~-----------------~~~~~~~~e~~l~~~~~~t~~~vh~al~d~~dT~~v~~~~~~lv- 417 (586)
T KOG2007|consen 356 KSLNNFFLDVKALLRGAK-----------------PFEKLSEKEAELLEDFGKTQTAVHAALCDNFDTPRVMEAIRELV- 417 (586)
T ss_pred HHHHHHHHHHHHHHhccc-----------------hhhccChHHHHHHHhhhhHHHHHHHHHHhccccHHHHHHHHHHH-
Confidence 888887644433222111 134566778889999999999999888 8999999999999998
Q ss_pred HhhHHHHHHHhh
Q 003578 716 SDFADWYIEASK 727 (809)
Q Consensus 716 ~~~~n~Yi~~~k 727 (809)
..+|-||....
T Consensus 418 -s~~N~~i~~~~ 428 (586)
T KOG2007|consen 418 -SQGNAYIRESG 428 (586)
T ss_pred -hhhhHHHHHhc
Confidence 68899998776
No 59
>PF01406 tRNA-synt_1e: tRNA synthetases class I (C) catalytic domain; InterPro: IPR015803 The aminoacyl-tRNA synthetases (6.1.1. from EC) catalyse the attachment of an amino acid to its cognate transfer RNA molecule in a highly specific two-step reaction. These proteins differ widely in size and oligomeric state, and have limited sequence homology []. The 20 aminoacyl-tRNA synthetases are divided into two classes, I and II. Class I aminoacyl-tRNA synthetases contain a characteristic Rossman fold catalytic domain and are mostly monomeric []. Class II aminoacyl-tRNA synthetases share an anti-parallel beta-sheet fold flanked by alpha-helices [], and are mostly dimeric or multimeric, containing at least three conserved regions [, , ]. However, tRNA binding involves an alpha-helical structure that is conserved between class I and class II synthetases. In reactions catalysed by the class I aminoacyl-tRNA synthetases, the aminoacyl group is coupled to the 2'-hydroxyl of the tRNA, while, in class II reactions, the 3'-hydroxyl site is preferred. The synthetases specific for arginine, cysteine, glutamic acid, glutamine, isoleucine, leucine, methionine, tyrosine, tryptophan and valine belong to class I synthetases. The synthetases specific for alanine, asparagine, aspartic acid, glycine, histidine, lysine, phenylalanine, proline, serine, and threonine belong to class-II synthetases []. Based on their mode of binding to the tRNA acceptor stem, both classes of tRNA synthetases have been subdivided into three subclasses, designated 1a, 1b, 1c and 2a, 2b, 2c. Cysteinyl-tRNA synthetase (6.1.1.16 from EC) is an alpha monomer and belongs to class Ia.; GO: 0000166 nucleotide binding, 0004817 cysteine-tRNA ligase activity, 0005524 ATP binding, 0006423 cysteinyl-tRNA aminoacylation, 0005737 cytoplasm; PDB: 3SP1_B 3TQO_A 3C8Z_B 1LI5_B 1LI7_B 1U0B_B.
Probab=99.97 E-value=9.1e-31 Score=272.41 Aligned_cols=287 Identities=23% Similarity=0.295 Sum_probs=187.1
Q ss_pred EeCCCCCCCCCCcchhhHHHHHHHHHHHHHHHCCCcccccCCCCCCCCchHHHHHHHHHHcCCCccccCHHHHHHHHHHH
Q 003578 94 ISMPPPNVTGSLHMGHAMFVTLEDIMVRYHRMKGRPTLWLPGTDHAGIATQLVVEKMLAAEGIKRVELSRDEFTKRVWEW 173 (809)
Q Consensus 94 i~~~pPy~nG~lHiGH~~~~~~~Di~~Ry~rm~G~~V~~~~G~D~~Gl~~~~~~e~~~~~~g~~~~~~~~~~f~~~~~~~ 173 (809)
-++| |+|...+||||+++++..|++.||++..|++|.++.+.-+. .-++.+.|++.|+++.++
T Consensus 12 Y~CG-PTVYd~~HiGhaR~~v~~D~l~R~L~~~g~~V~~V~NiTDi----DDKii~~A~~~g~~~~el------------ 74 (300)
T PF01406_consen 12 YVCG-PTVYDYAHIGHARTYVFFDVLRRYLEYLGYDVTYVMNITDI----DDKIIKRAREEGVSPQEL------------ 74 (300)
T ss_dssp EEEE-EBTTS--BHHHHHHHHHHHHHHHHHHHTT-EEEEEEEEB-S----SHHHHHHHHHTTS-HHHH------------
T ss_pred EcCC-CCCCCCCCCcceeeeeeHHHHHHHHHHcCCeEEEEEecccc----chHHHHHHHhccCCHHHH------------
Confidence 3566 89999999999999999999999999999999999887654 344667788899987754
Q ss_pred HHHHHHHHHHHHHHhcccccCCCccccCChhhHHHHHHHHHHHHHcCceeecC-cccccCCCCCcccCccccccccCCCc
Q 003578 174 KEKYGGTITSQIKRLGASCDWTRERFTLDEQLSRAVVEAFIRLHEKGLIYQGS-YMVNWSPNLQTAVSDLEVEYSEEPGT 252 (809)
Q Consensus 174 ~~~~~~~~~~~l~~lgi~~Dw~~~~~T~d~~~~~~v~~~f~~L~~~Gliy~~~-~~v~w~p~~~t~lsd~Ev~~~~~~~~ 252 (809)
+.+|.+.+.++|++||+.-.-.- +--.+|...+.++..+|.++|++|... ..|+++...
T Consensus 75 a~~y~~~f~~dm~~Lnv~~p~~~---prate~i~~ii~~i~~Li~~G~AY~~~~g~VYFdv~~----------------- 134 (300)
T PF01406_consen 75 ARRYEEEFFEDMKALNVLPPDHY---PRATEHIPEIIELIEKLIDKGHAYESEDGSVYFDVSK----------------- 134 (300)
T ss_dssp HHHHHHHHHHHHHHTT----SEE---EEGGGGHHHHHHHHHHHHHTTSEEEETTSEEEE-CCG-----------------
T ss_pred HHHHHHHHHHHHHHcCCCCCccc---cchhccHHHHHHHHHHHHHCCCeEEcCCCcEEEeecc-----------------
Confidence 46888999999999999886433 333479999999999999999999999 888764310
Q ss_pred eEEEEEEecCCCeeEEEEecCCccccCCcEEEECCCCchhhhcccCeeecCCCCCCeeeEEecCCccccCCCCceeecCC
Q 003578 253 LYYIKYRVAGRSDFLTIATTRPETLFGDVALAVNPQDEHYSQFIGMMAIVPMTYGRHVPIISDKYVDKEFGTGVLKISPG 332 (809)
Q Consensus 253 ~~~~~f~~~~~~~~l~v~Tt~petl~~~~av~v~p~~~~y~~l~g~~~~~P~~~~~~vpi~~~~~V~~~~GTG~v~~~P~ 332 (809)
.+.|
T Consensus 135 ------------------------------------~~~Y---------------------------------------- 138 (300)
T PF01406_consen 135 ------------------------------------FPDY---------------------------------------- 138 (300)
T ss_dssp ------------------------------------STTT----------------------------------------
T ss_pred ------------------------------------cccc----------------------------------------
Confidence 1112
Q ss_pred CChhhHHHHHHhCCCceeecCCCCcccccccccCCCCHHHHHHHHHHHHHHCCCeeeeecccccCcccccCCCeeEEeec
Q 003578 333 HDHNDYLLARKLGLPILNVMNKDGTLNEVAGLFRGLDRFEARKKLWSDLEETGLAVKKEPHTLRVPRSQRGGEVIEPLVS 412 (809)
Q Consensus 333 h~~~D~~~~~~~~l~~~~~~~~~G~~~~~~g~~~G~~~~~a~~~i~~~L~~~g~~~~~~~~~~~~p~c~r~~~~i~~~~~ 412 (809)
|.+++.+..+.+..-..... ..-+.|.+ +.|
T Consensus 139 ------------------------------G~Ls~~~~~~l~~~~~~~~~----------~~K~~p~D--------FaL- 169 (300)
T PF01406_consen 139 ------------------------------GKLSNQDLEDLEAGARVEVD----------YEKRNPRD--------FAL- 169 (300)
T ss_dssp ------------------------------TTTTT-SHHHHHHCHHHTT-----------TTSSSTT---------EEE-
T ss_pred ------------------------------ccccccchhhHHhhhhcccc----------cccCCCcc--------eee-
Confidence 12222221111100000000 00001100 000
Q ss_pred cceeeeccHHHHHHHHHHhcCCceEecchhHHHHHHHHhcCCceeeeccccccceeeEEEEcCCcccEEEcCChhHHHHH
Q 003578 413 KQWFVTMEPLAEKALHAVEKGELTIMPERFEKIYNHWLSNIKDWCISRQLWWGHRIPVWYIVGKEEEYIVARNADEALEK 492 (809)
Q Consensus 413 ~qwfl~~~~~~~~~~~~~~~~~~~~~P~~~~~~~~~~l~~l~Dw~ISRq~~WG~piP~~~~~~~~~~~~~~~~~~~~~~~ 492 (809)
|... +..+ .+-...||.-.|-|+++|-
T Consensus 170 ------------------------WK~~-----------~~~e--~~w~spwG~GRPGWHiECs---------------- 196 (300)
T PF01406_consen 170 ------------------------WKAA-----------KPGE--PSWDSPWGKGRPGWHIECS---------------- 196 (300)
T ss_dssp ------------------------EEE-------------TTS----B--TTSSEEE-HHHHHH----------------
T ss_pred ------------------------eecc-----------cccC--CcccCCCccCcCceeeehH----------------
Confidence 0000 0000 2224579999999998751
Q ss_pred HhhhcCCCccccccCCccceeecccCccceecCCCCCChhhhhhcCCCcEEEeeehhHHhHHHHHHHHHHHhcCCCCcee
Q 003578 493 AHQKYGKNVEIYQDPDVLDTWFSSALWPFSTLGWPDVSADDFKKFYPTTMLETGHDILFFWVARMVMMGIEFTGSVPFSH 572 (809)
Q Consensus 493 ~~~~~~~~~~~~~~~dvld~Wfds~~~~~~~~~~~~~~~~~~~~~~p~d~~~~G~Di~~~w~~~~~~~~~~l~~~~Pf~~ 572 (809)
. +....+| -+.|+|.+|.|.+|.|....++++.+++|+ ||.+
T Consensus 197 ------------------------a-m~~~~lG------------~~~DIH~GG~DL~FPHHENEiAqs~a~~g~-~~a~ 238 (300)
T PF01406_consen 197 ------------------------A-MSMKYLG------------DTFDIHGGGIDLIFPHHENEIAQSEAATGK-PFAN 238 (300)
T ss_dssp ------------------------H-HHHHHHT------------TSEEEEEEEGGGTTTHHHHHHHHHHHHHSS--SEE
T ss_pred ------------------------H-HHHHHcC------------CCceEEccccccCCCCccchHHHHHHhhCc-hHHH
Confidence 0 0000111 247999999999999999999999999984 8899
Q ss_pred EEEeeeEEccCCCcccccccCccChhhHHHhhCCchHHHHHhhCCCCCcccccHHHHHHHH
Q 003578 573 VYLHGLIRDSQGRKMSKTLGNVIDPIDTIKEFGADALRFTISLGTAGQDLSLSIERLTANK 633 (809)
Q Consensus 573 v~~hg~vld~~G~KMSKS~GN~I~p~dli~~ygaD~lR~~ll~~~~~~d~~fs~~~l~~~~ 633 (809)
+|+|...+..+|+|||||+||+++++|++++|+++++||+|++++++++++||++.|+.++
T Consensus 239 ~W~H~g~l~~~g~KMSKSlgN~~~i~dll~~~~~~~lR~~~l~~hYr~~l~~s~~~l~~A~ 299 (300)
T PF01406_consen 239 YWMHNGHLNVDGEKMSKSLGNFITIRDLLKKYSPDALRLFLLSTHYRKPLNFSEENLEEAK 299 (300)
T ss_dssp EEEEE--EEETTCE--TTTT---BHHHHHTTS-HHHHHHHHHTS-TTS-EEE-HHHHHHHH
T ss_pred HHHHHHHHhhcCccccccCCCEEEHHHHhhcCCHHHHHHHHhcCCCCCccccCHHHHHHhc
Confidence 9999888889999999999999999999999999999999999999999999999998765
No 60
>cd00674 LysRS_core_class_I catalytic core domain of class I lysyl tRNA synthetase. Class I lysyl tRNA synthetase (LysRS) catalytic core domain. This class I enzyme is a monomer which aminoacylates the 2'-OH of the nucleotide at the 3' of the appropriate tRNA. The core domain is based on the Rossman fold and is responsible for the ATP-dependent formation of the enzyme bound aminoacyl-adenylate. It contains the characteristic class I HIGH and KMSKS motifs, which are involved in ATP binding. The class I LysRS is found only in archaea and some bacteria and has evolved separately from class II LysRS, as the two do not share structural or sequence similarity.
Probab=99.96 E-value=1.6e-28 Score=265.52 Aligned_cols=125 Identities=14% Similarity=0.205 Sum_probs=99.6
Q ss_pred CCEEEeCCCCCCCCCCcchhhHHHHHHHHHHHHHHHCCCcccccCCCCCC--------CCchHHHHHHHHHHcCCCcccc
Q 003578 90 DPFVISMPPPNVTGSLHMGHAMFVTLEDIMVRYHRMKGRPTLWLPGTDHA--------GIATQLVVEKMLAAEGIKRVEL 161 (809)
Q Consensus 90 ~~f~i~~~pPy~nG~lHiGH~~~~~~~Di~~Ry~rm~G~~V~~~~G~D~~--------Gl~~~~~~e~~~~~~g~~~~~~ 161 (809)
++|+|++|+ +|||.+||||++.++.+|+++||+|++|++|.|++|+|+| |+|.+ .++..|++...+
T Consensus 19 ~~~~v~tgi-~psG~~HIG~~~e~i~~D~i~R~lr~~G~~v~~v~~~Dd~d~lrKvp~~l~~~-----~~~~~G~pi~~i 92 (353)
T cd00674 19 EKYVVASGI-SPSGHIHIGNFREVITADLVARALRDLGFEVRLIYSWDDYDRLRKVPPNVPES-----YEQYIGMPLSSV 92 (353)
T ss_pred CeEEEecCC-CCCCCcccCccHHHHHHHHHHHHHHHcCCCEEEEEEEcCCCcccccccchhhH-----HHHhcCccchhc
Confidence 569999996 5999999999999999999999999999999999999999 45432 234457665444
Q ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHHhcccccCCCccccCChhhHHHHHHHHHHHHHcCceee
Q 003578 162 SRDEFTKRVWEWKEKYGGTITSQIKRLGASCDWTRERFTLDEQLSRAVVEAFIRLHEKGLIYQ 224 (809)
Q Consensus 162 ~~~~f~~~~~~~~~~~~~~~~~~l~~lgi~~Dw~~~~~T~d~~~~~~v~~~f~~L~~~Gliy~ 224 (809)
.. .| ..|..|++.+.+.+++.|++||+++|+-+. |......+..+.++..|.+++.|..
T Consensus 93 p~-p~-g~~~~~~d~~~~~f~~~l~~lgi~~d~~~~--T~~y~~g~~~~~i~~~L~~~~~I~~ 151 (353)
T cd00674 93 PD-PF-GCCESYAEHFERPFEESLEKLGIEVEFISQ--SQMYKSGLYDENILIALEKRDEIMA 151 (353)
T ss_pred hh-hc-CCCHHHHHHHHHHHHHHHHHcCCeeeeeec--CCchhhchHHHHHHHHHHHCChHHH
Confidence 32 22 234578899999999999999999995441 4445555889999999999999854
No 61
>TIGR00456 argS arginyl-tRNA synthetase. This model recognizes arginyl-tRNA synthetase in every completed genome to date. An interesting feature of the alignment of all arginyl-tRNA synthetases is a fairly deep split between two families. One family includes archaeal, eukaryotic and organellar, spirochete, E. coli, and Synechocystis sp. The second, sharing a deletion of about 25 residues in the central region relative to the first, includes Bacillus subtilis, Aquifex aeolicus, the Mycoplasmas and Mycobacteria, and the Gram-negative bacterium Helicobacter pylori.
Probab=99.94 E-value=2e-24 Score=251.68 Aligned_cols=206 Identities=13% Similarity=0.030 Sum_probs=144.4
Q ss_pred EEEeeehhHHhHHHHHHHHHHHhcCCCCceeEEEeeeEEccCCCcccccccCccChh-----------------------
Q 003578 542 MLETGHDILFFWVARMVMMGIEFTGSVPFSHVYLHGLIRDSQGRKMSKTLGNVIDPI----------------------- 598 (809)
Q Consensus 542 ~~~~G~Di~~~w~~~~~~~~~~l~~~~Pf~~v~~hg~vld~~G~KMSKS~GN~I~p~----------------------- 598 (809)
+++.|.|+ .+|+.++..+..++.-..| .++..|++.+ .+|.|||||+||+|+|+
T Consensus 331 I~V~g~~q-~~h~~~v~~~l~~lG~~~~-~~l~h~~~~~-V~~~kmSkr~Gn~V~~~dll~~~~~ra~~~i~~~~~~~~~ 407 (566)
T TIGR00456 331 IYVWGSDH-HLHIAQFFAILEKLGFYKK-KELIHLNFGM-VPLGSMKTRRGNVISLDNLLDEASKRAGNVITIKNDLEEE 407 (566)
T ss_pred EEEecCcH-HHHHHHHHHHHHHcCCCCC-CceEEEEEEE-EECCCCCccCCceeeHHHHHHHHHHHHHHHHHhcCCccHH
Confidence 56778884 5666666555444432334 7898999986 77899999999999998
Q ss_pred hHHHhhCCchHHHHHhhCCCCCcccccHHHHHH-HHHHHHHHHHHHHHHHHhCCCCCchhhHHHHhhhccchhhhhcCCC
Q 003578 599 DTIKEFGADALRFTISLGTAGQDLSLSIERLTA-NKAFTNKLWNAGKFILQNLPSQNDISRWEILLAYKFDEEECLCKAP 677 (809)
Q Consensus 599 dli~~ygaD~lR~~ll~~~~~~d~~fs~~~l~~-~~~~~~kl~N~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~l~ 677 (809)
++++.+|.|++||++++..+.+|.+||++.+.. +.+...-+.|+..++.+.+..... .. . .....+...++
T Consensus 408 ~~~~~vg~dAvRy~~L~~~~~~d~~Fd~d~~~~~~~n~~~yiqYa~aR~~SIlrK~~~-~~---~----~~~~~~~~~~~ 479 (566)
T TIGR00456 408 DVADAVGIGAVRYFDLSQNRETHYVFDWDAMLSFEGNTAPYIQYAHARICSILRKADI-DG---E----KLIADDFSLLE 479 (566)
T ss_pred HHHHHhcccceeeHHhhcCCCCCceecHHHHhccCCCCchhHHHHHHHHHHHHHhccc-cc---c----cccccccCCCC
Confidence 777789999999999999999999999998765 445566677776666554322111 00 0 00000111224
Q ss_pred chhHHHHHHHHHHHHHHHHHhhcCChHHHHHHHHHHHHHhhHHHHHHHhhhhhhcCCCcH---HHHHHHHHHHHHHHHHH
Q 003578 678 LPECWVVSKLHMLIDTVTASYDKYFFGDVGRETYDFFWSDFADWYIEASKARLYRSEYDS---DAIIAQAVLLYIFENIL 754 (809)
Q Consensus 678 ~~d~~il~~l~~~~~~v~~a~e~~~f~~a~~~i~~f~~~~~~n~Yi~~~k~~l~~~~~~~---~~~~~~~~l~~vl~~l~ 754 (809)
+.++.++..+..+...+.+++++++++.+++.+++++ ...|.|++.. ++...++.+ .|..+......+|+..+
T Consensus 480 ~~e~~Ll~~l~~~~~~v~~a~~~~~p~~~~~~l~~La--~~~N~yy~~~--~Vl~~~~~~~~~~RL~L~~a~~~vl~~gL 555 (566)
T TIGR00456 480 EKEKELLKLLLQFPDVLEEAAEELEPHVLTNYLYELA--SLFSSFYKAC--PVLDAENENLAAARLALLKATRQTLKNGL 555 (566)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhCCcHHHHHHHHHHH--HHHHHHHhcC--ccCCCCCHHHHHHHHHHHHHHHHHHHHHH
Confidence 4577799999999999999999999999999999997 5678888755 555433322 34445555667777777
Q ss_pred HHhccchh
Q 003578 755 KLLHPFMP 762 (809)
Q Consensus 755 ~lL~P~~P 762 (809)
.||.-=.|
T Consensus 556 ~lLGI~~~ 563 (566)
T TIGR00456 556 QLLGIEPP 563 (566)
T ss_pred HhcCCCcc
Confidence 77754333
No 62
>PRK00750 lysK lysyl-tRNA synthetase; Reviewed
Probab=99.93 E-value=3.6e-25 Score=253.10 Aligned_cols=127 Identities=19% Similarity=0.201 Sum_probs=93.2
Q ss_pred CCEEEeCCCCCCCCCCcchhhHHHHHHHHHHHHHHHCCCcccccCCCCCCC--------CchHHHHHHHHHHcCCCcccc
Q 003578 90 DPFVISMPPPNVTGSLHMGHAMFVTLEDIMVRYHRMKGRPTLWLPGTDHAG--------IATQLVVEKMLAAEGIKRVEL 161 (809)
Q Consensus 90 ~~f~i~~~pPy~nG~lHiGH~~~~~~~Di~~Ry~rm~G~~V~~~~G~D~~G--------l~~~~~~e~~~~~~g~~~~~~ 161 (809)
+.++|.+|+ +|||.+||||++.++.+|+++|++|++|++|.+++|+|+|| +|.+. ..++..|++...+
T Consensus 23 ~~~~~~~g~-~psG~~HiG~~~e~~~~d~v~r~lr~~G~~v~~i~~~Dd~d~lRkvp~~~p~~~---~~~~~~G~pl~~~ 98 (510)
T PRK00750 23 PPVVVETGI-GPSGLPHIGNFREVARTDMVRRALRDLGIKTRLIFFSDDMDGLRKVPDNVPNQE---MLEEYLGKPLTEI 98 (510)
T ss_pred CcEEEEeCC-CCCCCcccccccchhhHHHHHHHHHHcCCcEEEEEEEecCCcccccCCCCCchH---HHHHhcCcccccC
Confidence 359999995 79999999999999999999999999999999999999998 56421 2234456653322
Q ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHHhcccccCCCccccCChhhHHHHHHHHHHHHHcCceee
Q 003578 162 SRDEFTKRVWEWKEKYGGTITSQIKRLGASCDWTRERFTLDEQLSRAVVEAFIRLHEKGLIYQ 224 (809)
Q Consensus 162 ~~~~f~~~~~~~~~~~~~~~~~~l~~lgi~~Dw~~~~~T~d~~~~~~v~~~f~~L~~~Gliy~ 224 (809)
. +.|-. +..|++.+.+.+++.++++||++|+-+. |.........+.+...|.+++.|..
T Consensus 99 p-~p~G~-~~~~~~~~~~~~~~~~~~~gi~~d~~~~--t~~y~~g~~~~~i~~~l~~~~~i~~ 157 (510)
T PRK00750 99 P-DPFGC-HESYAEHFNAPLREFLDRFGIEYEFISA--TECYKSGRYDEAILTALENRDEIME 157 (510)
T ss_pred C-CCCCC-chHHHHHHHHHHHHHHHHcCCceEEEeh--hhhhccCchHHHHHHHHHhHHHHHH
Confidence 1 11111 4578899999999999999999994431 3222233556667777777777643
No 63
>cd07961 Anticodon_Ia_Ile_ABEc Anticodon-binding domain of archaeal, bacterial, and eukaryotic cytoplasmic isoleucyl tRNA synthetases. This domain is found in isoleucyl tRNA synthetases (IleRS), which belong to the class Ia aminoacyl tRNA synthetases. It lies C-terminal to the catalytic core domain, and recognizes and specifically binds to the tRNA anticodon. This family includes bacterial, archaeal, and eukaryotic cytoplasmic members. IleRS catalyzes the transfer of isoleucine to the 3'-end of its tRNA.
Probab=99.91 E-value=3.6e-23 Score=207.63 Aligned_cols=174 Identities=26% Similarity=0.480 Sum_probs=144.3
Q ss_pred ccHHHHHHHHH-HHHHHHHHHHHHHH--hCCCCCchhhHHHHhhhccchhhhhcCCCchhHHHHHHHHHHHHHHHHHhhc
Q 003578 624 LSIERLTANKA-FTNKLWNAGKFILQ--NLPSQNDISRWEILLAYKFDEEECLCKAPLPECWVVSKLHMLIDTVTASYDK 700 (809)
Q Consensus 624 fs~~~l~~~~~-~~~kl~N~~~~~~~--~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~~d~~il~~l~~~~~~v~~a~e~ 700 (809)
||++.+++.++ |++||||+++|+++ +..+..+.. ...+...++..|+|++++++++++++.++|++
T Consensus 1 ~s~~~v~~~~~~f~~KlwN~~rf~l~~~~~~~~~~~~-----------~~~~~~~~~~~D~wil~~l~~~i~~~~~~~e~ 69 (183)
T cd07961 1 FSEKGVREVVRKVLLPLWNAYRFFVTYANLDGFDPGK-----------DDDAVASLNVLDRWILSRLNSLIKEVTEEMEA 69 (183)
T ss_pred CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCCc-----------cccccccCchhHHHHHHHHHHHHHHHHHHHHh
Confidence 68889999777 99999999999976 333222100 00011245678999999999999999999999
Q ss_pred CChHHHHHHHHHHHHHhhHHHHHHHhhhhhhcCCCcHHHHHHHHHHHHHHHHHHHHhccchhHHHHHHHHHhccC----C
Q 003578 701 YFFGDVGRETYDFFWSDFADWYIEASKARLYRSEYDSDAIIAQAVLLYIFENILKLLHPFMPFVTEELWQSLRKR----K 776 (809)
Q Consensus 701 ~~f~~a~~~i~~f~~~~~~n~Yi~~~k~~l~~~~~~~~~~~~~~~l~~vl~~l~~lL~P~~P~~aeeiw~~L~~~----~ 776 (809)
|+|++|++.++.|++ .++++|++..|++++++++...+..++.++..+++.++++|+|||||+|||||++++.. .
T Consensus 70 ~~f~~a~~~l~~f~~-~~~~~Y~e~~K~~~~~~~~~~~~~~~~~~l~~~l~~ll~ll~P~~P~~aEElw~~l~~~~~~~~ 148 (183)
T cd07961 70 YDLYTAVRALLEFID-ELTNWYIRRNRKRFWGEEGDDDKLAAYATLYEVLLTLSRLMAPFTPFITEEIYQNLRRELGDAP 148 (183)
T ss_pred ccHHHHHHHHHHHHH-HhhhhHhhhchHHhcCCCCchhHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHhhhhcCCCC
Confidence 999999999999997 56699999999999876433345678889999999999999999999999999999853 3
Q ss_pred CceEecCCCCCCC-cCCHHHHHHHHHHHHHHhhC
Q 003578 777 EALIVSPWPQTSL-PRHMSAIKRFENLQSLVILI 809 (809)
Q Consensus 777 ~sv~~~~wP~~~~-~~d~~~~~~~~~~~~~~~~~ 809 (809)
+||+.++||+++. ..|+.+++.++.+++++.++
T Consensus 149 ~si~~~~wP~~~~~~~~~~~~~~~~~l~~~i~~~ 182 (183)
T cd07961 149 ESVHLLDWPEVDESLIDEELEEAMELVREIVELG 182 (183)
T ss_pred CceeeecCCCCcccccCHHHHHHHHHHHHHHHhh
Confidence 6899999999885 67999999999999998864
No 64
>PF13603 tRNA-synt_1_2: Leucyl-tRNA synthetase, Domain 2; PDB: 2AJH_B 4ARI_A 2AJG_B 4AQ7_D 2AJI_B 4ARC_A 4AS1_A 2BTE_A 2V0G_A 2BYT_A ....
Probab=99.90 E-value=1.5e-23 Score=206.11 Aligned_cols=129 Identities=36% Similarity=0.646 Sum_probs=100.2
Q ss_pred ceEEEEEEecCCCeeEEEEecCCccccCCcEEEECCCCchhh---------------------------------hcccC
Q 003578 252 TLYYIKYRVAGRSDFLTIATTRPETLFGDVALAVNPQDEHYS---------------------------------QFIGM 298 (809)
Q Consensus 252 ~~~~~~f~~~~~~~~l~v~Tt~petl~~~~av~v~p~~~~y~---------------------------------~l~g~ 298 (809)
.-+.++|++.+.+..|.|+|||||||+|.++|+++|+++... -+.|.
T Consensus 8 ~G~~i~F~i~~~~~~i~vFTTrpdTifGvtfials~~H~lv~~l~~~~~~l~~fi~~~~~~~~~~~~~~~~~k~Gv~tg~ 87 (185)
T PF13603_consen 8 EGAEIDFKIKGSNEKIEVFTTRPDTIFGVTFIALSPEHPLVKKLAENNPELQEFIEKCKKIKNSERNKDFKEKEGVFTGL 87 (185)
T ss_dssp EEEEEEEEBTTSSCEEEEEES-GGGGGG--EEEEETTSCHHHHCTTTHHHHHHHHHHHHTS-HHHHHHCSSS--EEEEEE
T ss_pred ccEEEEEEecCCCCEEEEEECCcchhhCceEEEECCCCHHHHhhhhhhhhHHHHHHHHhcCCHhHhhhhccccccCcCCC
Confidence 356889999988889999999999999999999999997311 14688
Q ss_pred eeecCCCCCCeeeEEecCCccccCCCCceeecCCCChhhHHHHHHhCCCceeecCC----------------CCcccccc
Q 003578 299 MAIVPMTYGRHVPIISDKYVDKEFGTGVLKISPGHDHNDYLLARKLGLPILNVMNK----------------DGTLNEVA 362 (809)
Q Consensus 299 ~~~~P~~~~~~vpi~~~~~V~~~~GTG~v~~~P~h~~~D~~~~~~~~l~~~~~~~~----------------~G~~~~~~ 362 (809)
++.||+ +++++||+.++||.+++|||+||.||+||++||++|++|+||+..++.. +|.++ ++
T Consensus 88 ~aihP~-t~~~iPI~va~yVl~~yGtgAVmgvPahD~rD~~FAk~~~lpi~~Vi~~~~~~~~~~~~~~~~~~~G~l~-nS 165 (185)
T PF13603_consen 88 YAIHPL-TGKKIPIYVANYVLMDYGTGAVMGVPAHDERDFEFAKKYNLPIKQVIKPKDDNEEIDNKQEAYTGDGILI-NS 165 (185)
T ss_dssp EEE-TT-TS-EEEEEEETTS-TTSTTSEEEE-CCC-HHHHHHHHHHT------EEBSSSS---STTSS---S--EE--SS
T ss_pred EEECCC-CCCCccEEEECceeecCCcceEEEcCCCCHHHHHHHHHcCCCeeEEEcCCCCcccccccccCcCCCEEEE-eC
Confidence 999999 5999999999999999999999999999999999999999998766542 36665 78
Q ss_pred cccCCCCHHHHHHHHHHHHH
Q 003578 363 GLFRGLDRFEARKKLWSDLE 382 (809)
Q Consensus 363 g~~~G~~~~~a~~~i~~~L~ 382 (809)
|.|.||+..+|+++|++.|+
T Consensus 166 ~~f~Gl~~~eA~~~I~~~Le 185 (185)
T PF13603_consen 166 GEFNGLSSKEAREKIIKKLE 185 (185)
T ss_dssp GGGTTSBHHHHHHHHHHHHH
T ss_pred CCCCCCCHHHHHHHHHHHhC
Confidence 99999999999999999985
No 65
>cd07960 Anticodon_Ia_Ile_BEm Anticodon-binding domain of bacterial and eukaryotic mitochondrial isoleucyl tRNA synthetases. This domain is found in isoleucyl tRNA synthetases (IleRS), which belong to the class Ia aminoacyl tRNA synthetases. It lies C-terminal to the catalytic core domain, and recognizes and specifically binds to the tRNA anticodon. This family includes bacterial and eukaryotic mitochondrial members. IleRS catalyzes the transfer of isoleucine to the 3'-end of its tRNA.
Probab=99.90 E-value=1.6e-22 Score=202.28 Aligned_cols=174 Identities=26% Similarity=0.415 Sum_probs=146.2
Q ss_pred ccHHHHHHHHHHHHHHHHHHHHHHHhCCCCCchhhHHHHhhhccchhhhhcCCCchhHHHHHHHHHHHHHHHHHhhcCCh
Q 003578 624 LSIERLTANKAFTNKLWNAGKFILQNLPSQNDISRWEILLAYKFDEEECLCKAPLPECWVVSKLHMLIDTVTASYDKYFF 703 (809)
Q Consensus 624 fs~~~l~~~~~~~~kl~N~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~~d~~il~~l~~~~~~v~~a~e~~~f 703 (809)
++.+.+++.+++++|+||+++|+.+++.+..+.. .......++..|+|++++++++++++.++|++|+|
T Consensus 1 i~~~~~~~~~~~~~Kl~N~~rf~~~~~~~~~~~~-----------~~~~~~~~~~~D~~il~~l~~~i~~~~~~~e~~~f 69 (180)
T cd07960 1 ISDEILKQVAEAYRKIRNTFRFLLGNLNDFDPAK-----------DAVPYEELLELDRYALHRLNELIKEVREAYENYEF 69 (180)
T ss_pred CCHHHHHHHHHHHHHHHHHHHHHHHcccCCCccc-----------ccCChhhccHHHHHHHHHHHHHHHHHHHHHHhCCH
Confidence 4678889999999999999999987765433200 00011345678999999999999999999999999
Q ss_pred HHHHHHHHHHHHHhhHHHHHHHhhhhhhcCC-CcHHHHHHHHHHHHHHHHHHHHhccchhHHHHHHHHHhccC--CCceE
Q 003578 704 GDVGRETYDFFWSDFADWYIEASKARLYRSE-YDSDAIIAQAVLLYIFENILKLLHPFMPFVTEELWQSLRKR--KEALI 780 (809)
Q Consensus 704 ~~a~~~i~~f~~~~~~n~Yi~~~k~~l~~~~-~~~~~~~~~~~l~~vl~~l~~lL~P~~P~~aeeiw~~L~~~--~~sv~ 780 (809)
+.|++.+++|+++++||+|++..|||++++. ++..+..+..+++.+++.+++||+|||||+||+||+.|+.. ..+++
T Consensus 70 ~~a~~~i~~f~~~~l~n~Yi~~~k~~~~~~~~~~~~~~~~~~~l~~~l~~l~~lL~P~~P~~aeel~~~l~~~~~~~~v~ 149 (180)
T cd07960 70 HKVYQALNNFCTVDLSAFYLDIIKDRLYCDAKDSLERRSAQTVLYHILDALLKLLAPILPFTAEEVWEHLPGEKKEESVF 149 (180)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhcccceecCCCCCHHHHHHHHHHHHHHHHHHHHHcchhhhhHHHHHHhccccCCCCCee
Confidence 9999999999988899999999999998642 22344667889999999999999999999999999999864 46899
Q ss_pred ecCCCCCCC-cCCHHHHHHHHHHHHHHhh
Q 003578 781 VSPWPQTSL-PRHMSAIKRFENLQSLVIL 808 (809)
Q Consensus 781 ~~~wP~~~~-~~d~~~~~~~~~~~~~~~~ 808 (809)
.++||+.+. ..|++++..|+.+++|--+
T Consensus 150 ~~~wP~~~~~~~~~~~~~~~~~~~~i~~~ 178 (180)
T cd07960 150 LEDWPELPEEWKDEELEEKWEKLLALRDE 178 (180)
T ss_pred ccCCCCCcccccCHHHHHHHHHHHHHHHh
Confidence 999999986 7899999999999988654
No 66
>COG0018 ArgS Arginyl-tRNA synthetase [Translation, ribosomal structure and biogenesis]
Probab=99.89 E-value=7.3e-21 Score=217.87 Aligned_cols=200 Identities=20% Similarity=0.220 Sum_probs=138.1
Q ss_pred EEEeeehhHHhHHHHHHHHHHHhcCCCCceeEEEe---eeEEccCCCcccccccCccChhhHHHhhC-------------
Q 003578 542 MLETGHDILFFWVARMVMMGIEFTGSVPFSHVYLH---GLIRDSQGRKMSKTLGNVIDPIDTIKEFG------------- 605 (809)
Q Consensus 542 ~~~~G~Di~~~w~~~~~~~~~~l~~~~Pf~~v~~h---g~vld~~G~KMSKS~GN~I~p~dli~~yg------------- 605 (809)
+++.|.|+ ++++.++.+....+... +-+.+.+| |++++.+|.||||..|++|+.+|++++.+
T Consensus 338 IyV~gadq-~~~~~ql~~~l~~~g~~-~~~~~~~h~~~~l~~~~~g~kmStR~G~~vtl~dllde~~era~~~~~~~~~~ 415 (577)
T COG0018 338 IYVLGADQ-HGHFKQLKAVLELLGYG-PDKEVLLHQGVGLVRGGEGVKMSTRAGNVVTLDDLLDEAGERAPEEMEEKEEK 415 (577)
T ss_pred EEEeCCcc-hhHHHHHHHHHHHhcCC-CccceEEEEEEeeeECCCCccccccCCceEEHHHHHHHHHHHhhhHhhhhhhh
Confidence 67889884 45566665433333222 32344444 44556789999999999999999999988
Q ss_pred ---------CchHHHHHhhCCCCCcccccHHHHHHHHH--------HHHHHHHHHHHHHHhCCCCCchhhHHHHhhhccc
Q 003578 606 ---------ADALRFTISLGTAGQDLSLSIERLTANKA--------FTNKLWNAGKFILQNLPSQNDISRWEILLAYKFD 668 (809)
Q Consensus 606 ---------aD~lR~~ll~~~~~~d~~fs~~~l~~~~~--------~~~kl~N~~~~~~~~l~~~~~~~~~~~~~~~~~~ 668 (809)
.|++||++++.++.+++.|+++.+.+... ...|+.++++..... .... .
T Consensus 416 ~~~iA~~vgi~Avry~~l~~~~~~~~~Fd~d~~lsfegNt~pYvQYA~ARi~SIlrka~e~--~~~~------------~ 481 (577)
T COG0018 416 NEEIAEVVGIDAVRYADLSRSRDKDYVFDWDKALSFEGNTAPYVQYAHARICSILRKAGED--ELDL------------S 481 (577)
T ss_pred hHHHHHHhhhhhHHHHHHhcCCCCCcEeeHHHHHhccCCCchhHHHHHHHHHHHHHhcccc--cccc------------c
Confidence 99999999999999999999999876221 333444444433221 0000 0
Q ss_pred hhhhhcCC-CchhHHHHHHHHHHHHHHHHHhhcCChHHHHHHHHHHHHHhhHHHHHHHhhhhhhcCCCcH---HHHHHHH
Q 003578 669 EEECLCKA-PLPECWVVSKLHMLIDTVTASYDKYFFGDVGRETYDFFWSDFADWYIEASKARLYRSEYDS---DAIIAQA 744 (809)
Q Consensus 669 ~~~~~~~l-~~~d~~il~~l~~~~~~v~~a~e~~~f~~a~~~i~~f~~~~~~n~Yi~~~k~~l~~~~~~~---~~~~~~~ 744 (809)
.... ..+ .+.++.++..|.++..-+.++.++++.+....+++++. ..|+.|| .+.++...++.. .|..+..
T Consensus 482 ~~~~-~~l~~~~E~~L~~~L~~fp~vl~~aa~~~~Ph~la~YL~~LA-~~Fn~fY---~~~~Vl~~~~~~~~~aRL~L~~ 556 (577)
T COG0018 482 TEAD-ALLTELEERELVKKLLEFPEVLEEAAEELEPHRLANYLYDLA-GSFNSFY---NACPVLGAENEELRAARLALVK 556 (577)
T ss_pred cccc-hhccChHHHHHHHHHHHhHHHHHHHHHhcCchHHHHHHHHHH-HHHHHHH---hhCCcCCCCcHHHHHHHHHHHH
Confidence 0000 012 22367899999999999999999999999999999998 7899999 566776654432 3444555
Q ss_pred HHHHHHHHHHHHhccchh
Q 003578 745 VLLYIFENILKLLHPFMP 762 (809)
Q Consensus 745 ~l~~vl~~l~~lL~P~~P 762 (809)
....+|+..+.||.-=+|
T Consensus 557 a~~~vL~ngL~LLGI~~~ 574 (577)
T COG0018 557 ATRQVLKNGLDLLGIEAP 574 (577)
T ss_pred HHHHHHHHHHHhcCCCCc
Confidence 566777777777764443
No 67
>TIGR00467 lysS_arch lysyl-tRNA synthetase, archaeal and spirochete. This model represents the lysyl-tRNA synthetases that are class I amino-acyl tRNA synthetases. It includes archaeal and spirochete examples of the enzyme. All other known examples are class IIc amino-acyl tRNA synthetases and seem to form a separate orthologous set.
Probab=99.88 E-value=7.5e-22 Score=223.89 Aligned_cols=99 Identities=15% Similarity=0.196 Sum_probs=74.2
Q ss_pred CCEEEeCCCCCCCCCCcchhhHHHHHHHHHHHHHHHCCCcccccCCCCCC--------CCchHHHHHHHHHHcCCCcccc
Q 003578 90 DPFVISMPPPNVTGSLHMGHAMFVTLEDIMVRYHRMKGRPTLWLPGTDHA--------GIATQLVVEKMLAAEGIKRVEL 161 (809)
Q Consensus 90 ~~f~i~~~pPy~nG~lHiGH~~~~~~~Di~~Ry~rm~G~~V~~~~G~D~~--------Gl~~~~~~e~~~~~~g~~~~~~ 161 (809)
++++|++|.+ |||.+||||++..+.+|+++|++|++|++|.+++|+|+| ++|- ...+-.|.+...+
T Consensus 18 ~~~~~~tg~~-psG~~HiG~~~e~~~~d~v~r~~r~~g~~~~~i~~~Dd~D~lRKvp~~~p~-----~~~~ylG~Pl~~v 91 (515)
T TIGR00467 18 NLYTVASGIT-PSGHIHIGNFREVITADAIARALRDSGSEARFIYIADNYDPLRKVYPFLPE-----ELETYLGMPLTRI 91 (515)
T ss_pred CeEEEecCCC-CCCCccccchhhhhHHHHHHHHHHHcCCCEEEEEEEcCCcccccccccccH-----HHHHhCCCcceec
Confidence 3699999977 999999999999999999999999999999999999999 3331 0111123321111
Q ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHHhcccccCCC
Q 003578 162 SRDEFTKRVWEWKEKYGGTITSQIKRLGASCDWTR 196 (809)
Q Consensus 162 ~~~~f~~~~~~~~~~~~~~~~~~l~~lgi~~Dw~~ 196 (809)
. +.|- .+..|++.+...+.+.|..||+.+++-+
T Consensus 92 p-dp~g-~~~s~~~h~~~~~~~~l~~~gi~~e~~s 124 (515)
T TIGR00467 92 P-DPEG-CKTSYAEHFLIPFLESLPVLGINPEFIR 124 (515)
T ss_pred C-CCCC-CcHHHHHHHHHHHHHHHHHcCCeEEEEE
Confidence 0 0110 1346788999999999999999988654
No 68
>PRK12451 arginyl-tRNA synthetase; Reviewed
Probab=99.87 E-value=6.8e-20 Score=212.93 Aligned_cols=193 Identities=13% Similarity=0.111 Sum_probs=129.9
Q ss_pred EEEeeehhHHhHHHHHHHHHHHhcCCCC-ceeEEEeeeEEccCCCcccccccCccChhhHHHh-----------------
Q 003578 542 MLETGHDILFFWVARMVMMGIEFTGSVP-FSHVYLHGLIRDSQGRKMSKTLGNVIDPIDTIKE----------------- 603 (809)
Q Consensus 542 ~~~~G~Di~~~w~~~~~~~~~~l~~~~P-f~~v~~hg~vld~~G~KMSKS~GN~I~p~dli~~----------------- 603 (809)
+++.|.|| .+|+.++..+...+....+ --.++..|+|. .+|+||||.+||+|+++|++++
T Consensus 328 IyV~g~dq-~~h~~~l~~~~~~lg~~~~~~l~h~~~g~V~-~~g~kmStR~G~~v~l~dLldea~~~a~~~~~~~~~~l~ 405 (562)
T PRK12451 328 LYVVGPEQ-SLHFNQFFTVLKKLGYTWVDGMEHVPFGLIL-KDGKKMSTRKGRVVLLEEVLEEAIELAKQNIEEKNPNLK 405 (562)
T ss_pred EEEeCCcH-HHHHHHHHHHHHHcCCCcccCeEEEeeeeEe-cCCCCCcCCCCCeeEHHHHHHHHHHHHHHHHHhhccccc
Confidence 56778884 4566666554444431211 12457788886 7899999999999999999996
Q ss_pred --------hCCchHHHHHhhCCCCCcccccHHHHHH---HHH-----HHHHHHHHHHHHHHhCCCCCchhhHHHHhhhcc
Q 003578 604 --------FGADALRFTISLGTAGQDLSLSIERLTA---NKA-----FTNKLWNAGKFILQNLPSQNDISRWEILLAYKF 667 (809)
Q Consensus 604 --------ygaD~lR~~ll~~~~~~d~~fs~~~l~~---~~~-----~~~kl~N~~~~~~~~l~~~~~~~~~~~~~~~~~ 667 (809)
.|.|++||++++..+.++++|+++.+.+ +.. ...|+..+++... . ....
T Consensus 406 ~~~~~a~~vg~~Airy~~l~~~~~~~~~Fd~d~~l~~~g~t~pYiQYa~AR~~SIlrka~--~-~~~~------------ 470 (562)
T PRK12451 406 QKEEVAKQVGVGAVIFHDLKNERMHNIEFSLENMLKFEGETGPYVQYTHARACSILRKES--V-EFET------------ 470 (562)
T ss_pred cHHHHHHHhccceeeeHHhhcCCCCCceECHHHHhCcCCCccHHHHHHHHHHHHHHHhcC--C-Cccc------------
Confidence 6799999999999999999999999654 111 2224433333321 0 0000
Q ss_pred chhhhhcCCCchhHHHHHHHHHHHHHHHHHhhcCChHHHHHHHHHHHHHhhHHHHHHHhhhhhhcCCCc--HHHHHHHHH
Q 003578 668 DEEECLCKAPLPECWVVSKLHMLIDTVTASYDKYFFGDVGRETYDFFWSDFADWYIEASKARLYRSEYD--SDAIIAQAV 745 (809)
Q Consensus 668 ~~~~~~~~l~~~d~~il~~l~~~~~~v~~a~e~~~f~~a~~~i~~f~~~~~~n~Yi~~~k~~l~~~~~~--~~~~~~~~~ 745 (809)
.+..-.++.+..++..+..+...+.+++++++++.++..+++++ ...|.|++..+ +..+ ++ ..|..+...
T Consensus 471 ---~~~~l~~~~E~~Ll~~L~~~~~~v~~a~e~~ep~~~~~yl~~LA--~~fN~fy~~~~--Vl~~-~~~~~~RL~L~~a 542 (562)
T PRK12451 471 ---CTFALKDDYSWSVVKLLNKFPQVIEAAFNKNEPSVISKYVLDVA--QSFNKYYGNVR--ILEE-SAEKDSRLALVYA 542 (562)
T ss_pred ---cccCCCCHHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHH--HHHHHHHHhCC--CCCC-HHHHHHHHHHHHH
Confidence 01111144567799999999999999999999999999999997 45677776432 3322 21 133444455
Q ss_pred HHHHHHHHHHHhcc
Q 003578 746 LLYIFENILKLLHP 759 (809)
Q Consensus 746 l~~vl~~l~~lL~P 759 (809)
...+|...+.||.-
T Consensus 543 ~~~vL~~gL~LLGI 556 (562)
T PRK12451 543 VTVVLKEGLRLLGV 556 (562)
T ss_pred HHHHHHHHHHhcCC
Confidence 66677777777753
No 69
>PLN02286 arginine-tRNA ligase
Probab=99.86 E-value=4.7e-19 Score=205.98 Aligned_cols=202 Identities=10% Similarity=0.095 Sum_probs=137.1
Q ss_pred EEEeeehhHHhHHHHHHHHHHHhcCCCC----ceeEEEeeeEEccCCCcccccccCccChhhHHHh--------------
Q 003578 542 MLETGHDILFFWVARMVMMGIEFTGSVP----FSHVYLHGLIRDSQGRKMSKTLGNVIDPIDTIKE-------------- 603 (809)
Q Consensus 542 ~~~~G~Di~~~w~~~~~~~~~~l~~~~P----f~~v~~hg~vld~~G~KMSKS~GN~I~p~dli~~-------------- 603 (809)
+++.|.|| .+|+.++..+...+.-..+ --.++..|+|+..+|+||||.+||+|+++|++++
T Consensus 331 IyVvg~~q-~~hf~~v~~~l~~lG~~~~~~~~~l~h~~~g~V~~~~g~kmStR~G~~v~L~dlldea~~~a~~~~~~~~~ 409 (576)
T PLN02286 331 IYVTDVGQ-QQHFDMVFKAAKRAGWLPEDTYPRLEHVGFGLVLGEDGKRFRTRSGEVVRLVDLLDEAKSRSKAALIERGK 409 (576)
T ss_pred EEEEeCcH-HHHHHHHHHHHHHcCCCccccCCceEEEeeccEECCCCCcccCCCCCeeEHHHHHHHHHHHHHHHHHhccC
Confidence 56778884 4566666554444431111 1356789999768899999999999999999994
Q ss_pred ---------------hCCchHHHHHhhCCCCCcccccHHHHHHH---H-----HHHHHHHHHHHHHHHhCCCCCchhhHH
Q 003578 604 ---------------FGADALRFTISLGTAGQDLSLSIERLTAN---K-----AFTNKLWNAGKFILQNLPSQNDISRWE 660 (809)
Q Consensus 604 ---------------ygaD~lR~~ll~~~~~~d~~fs~~~l~~~---~-----~~~~kl~N~~~~~~~~l~~~~~~~~~~ 660 (809)
.|.|++||++++..+.++++|+++.+.+. . -...|+..+++.+........
T Consensus 410 ~~~~~~~~~~~~a~~vg~~Airy~~L~~~~~~~~~Fd~d~~l~~~g~t~pYlQYahAR~~SIlrKa~~~~~~~~------ 483 (576)
T PLN02286 410 DSEWTPEELEQAAEAVGYGAVKYADLKNNRLTNYTFSFDQMLDLKGNTAVYLLYAHARICSIIRKSGKDIDELK------ 483 (576)
T ss_pred ccccchhhHHHHHHHhhhhhhhhhhhhcCCCCCCccCHHHHHhhcCCChHHHHHHHHHHHHHHHhccCcccccc------
Confidence 47899999999999999999999997541 1 122233333332210000000
Q ss_pred HHhhhccchhhhhcCCCchhHHHHHHHHHHHHHHHHHhhcCChHHHHHHHHHHHHHhhHHHHHHHhhhhhhcCCCcHHHH
Q 003578 661 ILLAYKFDEEECLCKAPLPECWVVSKLHMLIDTVTASYDKYFFGDVGRETYDFFWSDFADWYIEASKARLYRSEYDSDAI 740 (809)
Q Consensus 661 ~~~~~~~~~~~~~~~l~~~d~~il~~l~~~~~~v~~a~e~~~f~~a~~~i~~f~~~~~~n~Yi~~~k~~l~~~~~~~~~~ 740 (809)
...+..-.++.++.++..|..+...+.++.++++.+..+.+++++. ..|+.+|= ..++...++...|.
T Consensus 484 --------~~~~~~l~~~~E~~L~~~l~~fp~vv~~a~~~~~P~~l~~Yl~~LA-~~F~~fY~---~~~Vl~~~~~~aRL 551 (576)
T PLN02286 484 --------KTGKIVLDHPDERALGLHLLQFPEVVEEACTDLLPNRLCEYLYNLS-EKFTKFYS---NCKVNGSEEETSRL 551 (576)
T ss_pred --------ccccccCCCHHHHHHHHHHHHHHHHHHHHHHhcCchHHHHHHHHHH-HHHHHHHh---cCccCCCCchhHHH
Confidence 0000111145677899999999999999999999999999999998 68988883 34555432333455
Q ss_pred HHHHHHHHHHHHHHHHhccchh
Q 003578 741 IAQAVLLYIFENILKLLHPFMP 762 (809)
Q Consensus 741 ~~~~~l~~vl~~l~~lL~P~~P 762 (809)
.+......+|+..+.||.-=.|
T Consensus 552 ~L~~a~~~vL~~gL~LLGI~~~ 573 (576)
T PLN02286 552 LLCEATAIVMRKCFHLLGITPL 573 (576)
T ss_pred HHHHHHHHHHHHHHHhcCCCcc
Confidence 5666677788888888754333
No 70
>cd00671 ArgRS_core catalytic core domain of arginyl-tRNA synthetases. Arginyl tRNA synthetase (ArgRS) catalytic core domain. This class I enzyme is a monomer which aminoacylates the 2'-OH of the nucleotide at the 3' of the appropriate tRNA. The core domain is based on the Rossman fold and is responsible for the ATP-dependent formation of the enzyme bound aminoacyl-adenylate. There are at least three subgroups of ArgRS. One type contains both characteristic class I HIGH and KMSKS motifs, which are involved in ATP binding. The second subtype lacks the KMSKS motif; however, it has a lysine N-terminal to the HIGH motif, which serves as the functional counterpart to the second lysine of the KMSKS motif. A third group, which is found primarily in archaea and a few bacteria, lacks both the KMSKS motif and the HIGH loop lysine.
Probab=99.82 E-value=4.1e-19 Score=182.07 Aligned_cols=119 Identities=18% Similarity=0.181 Sum_probs=101.3
Q ss_pred EEEeCCCCCCCCCCcchhhHHHHHHHHHHHHHHHCCCcccccCCCCCCCCchHHHHHHHHHHcCCCccccCHHHHHHHHH
Q 003578 92 FVISMPPPNVTGSLHMGHAMFVTLEDIMVRYHRMKGRPTLWLPGTDHAGIATQLVVEKMLAAEGIKRVELSRDEFTKRVW 171 (809)
Q Consensus 92 f~i~~~pPy~nG~lHiGH~~~~~~~Di~~Ry~rm~G~~V~~~~G~D~~Gl~~~~~~e~~~~~~g~~~~~~~~~~f~~~~~ 171 (809)
.+|...+|||||+|||||+++++++|+++|++|+.|++|.++.|+|++|.+++..+++. +. ++
T Consensus 2 v~ve~~spN~~~~~HiGH~R~~vigD~l~R~l~~~G~~V~~~~~~~D~G~qi~~~a~~~----~~-------------~~ 64 (212)
T cd00671 2 ILVEFVSANPTGPLHVGHLRNAIIGDSLARILEFLGYDVTREYYINDWGRQIGLLILSL----EK-------------WR 64 (212)
T ss_pred eEEEecCCCCCCCccccccHHHHHHHHHHHHHHHCCCcEEEEeccCCcHHHHHHHHHHH----HH-------------HH
Confidence 57778889999999999999999999999999999999999999999999976655332 11 44
Q ss_pred HHHHHHHHHHHHHHHHhccccc-CCCccccCChhhHHHHHHHHHHHHHcCceeecCcccccC
Q 003578 172 EWKEKYGGTITSQIKRLGASCD-WTRERFTLDEQLSRAVVEAFIRLHEKGLIYQGSYMVNWS 232 (809)
Q Consensus 172 ~~~~~~~~~~~~~l~~lgi~~D-w~~~~~T~d~~~~~~v~~~f~~L~~~Gliy~~~~~v~w~ 232 (809)
++++.+.+.+.+.+++||+++| |.+ |++ +...++.++.+|.++|++|+....+..|
T Consensus 65 ~~~~~~~~~~~~~~~~L~i~~d~~~~---es~--~~~~~~~~i~~L~~~g~~~~~~g~~~~~ 121 (212)
T cd00671 65 KLVEESIKADLETYGRLDVRFDVWFG---ESS--YLGLMGKVVELLEELGLLYEEDGALWLD 121 (212)
T ss_pred HHHHHHHHHHHHHHHHhCCcCceecc---hhh--hhhHHHHHHHHHHHCCCEEEeCCcEEEe
Confidence 6678899999999999999999 776 444 3788999999999999999888765443
No 71
>PF08264 Anticodon_1: Anticodon-binding domain of tRNA; InterPro: IPR013155 The aminoacyl-tRNA synthetases (6.1.1. from EC) catalyse the attachment of an amino acid to its cognate transfer RNA molecule in a highly specific two-step reaction. These proteins differ widely in size and oligomeric state, and have limited sequence homology []. The 20 aminoacyl-tRNA synthetases are divided into two classes, I and II. Class I aminoacyl-tRNA synthetases contain a characteristic Rossman fold catalytic domain and are mostly monomeric []. Class II aminoacyl-tRNA synthetases share an anti-parallel beta-sheet fold flanked by alpha-helices [], and are mostly dimeric or multimeric, containing at least three conserved regions [, , ]. However, tRNA binding involves an alpha-helical structure that is conserved between class I and class II synthetases. In reactions catalysed by the class I aminoacyl-tRNA synthetases, the aminoacyl group is coupled to the 2'-hydroxyl of the tRNA, while, in class II reactions, the 3'-hydroxyl site is preferred. The synthetases specific for arginine, cysteine, glutamic acid, glutamine, isoleucine, leucine, methionine, tyrosine, tryptophan and valine belong to class I synthetases. The synthetases specific for alanine, asparagine, aspartic acid, glycine, histidine, lysine, phenylalanine, proline, serine, and threonine belong to class-II synthetases []. Based on their mode of binding to the tRNA acceptor stem, both classes of tRNA synthetases have been subdivided into three subclasses, designated 1a, 1b, 1c and 2a, 2b, 2c. This domain is found valyl, leucyl and isoleucyl tRNA synthetases. It binds to the anticodon of the tRNA.; GO: 0000166 nucleotide binding, 0004812 aminoacyl-tRNA ligase activity, 0005524 ATP binding, 0006418 tRNA aminoacylation for protein translation, 0005737 cytoplasm; PDB: 4DLP_A 1RQG_A 4ARI_A 4AQ7_D 4ARC_A 4AS1_A 1IVS_B 1GAX_B 2CT8_B 2CSX_A ....
Probab=99.78 E-value=2.2e-18 Score=167.64 Aligned_cols=127 Identities=36% Similarity=0.715 Sum_probs=103.0
Q ss_pred hHHHHHHHHHHHHHHHHHhhcCChHHHHHHHHHHHHHhhHHHHHHHhhhhhhcCCCcHHHHHHHHHHHHHHHHHHHHhcc
Q 003578 680 ECWVVSKLHMLIDTVTASYDKYFFGDVGRETYDFFWSDFADWYIEASKARLYRSEYDSDAIIAQAVLLYIFENILKLLHP 759 (809)
Q Consensus 680 d~~il~~l~~~~~~v~~a~e~~~f~~a~~~i~~f~~~~~~n~Yi~~~k~~l~~~~~~~~~~~~~~~l~~vl~~l~~lL~P 759 (809)
|+|++++++++++++.++|++|+|++|++.+++|+++++||+|++..|+|++++++.+.++ ++.++..+++.+++||+|
T Consensus 1 D~~il~~~~~~~~~~~~~~e~~~f~~a~~~i~~f~~~~~~n~Yl~~~k~~~~~~~~~~~~~-~~~~l~~~l~~~~~ll~P 79 (153)
T PF08264_consen 1 DRWILSKLNELIKKVTEAYENYEFNKALKEIMNFIWNDLSNWYLELIKPWLYCKDDDESRE-AQYTLYEILKILLILLSP 79 (153)
T ss_dssp HHHHHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHCHHHHHHHHHHHCTTTTCHHHH-HHHHHHHHHHHHHHHHTT
T ss_pred CHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHhcccchhcccchhHHH-HHHHHHHHHHHHhhccCC
Confidence 7899999999999999999999999999999999889999999999999999876555555 889999999999999999
Q ss_pred chhHHHHHHHHHhc----cCCCceEecCCCCCCC-cCCHHH-HHHHHHHHHHHhh
Q 003578 760 FMPFVTEELWQSLR----KRKEALIVSPWPQTSL-PRHMSA-IKRFENLQSLVIL 808 (809)
Q Consensus 760 ~~P~~aeeiw~~L~----~~~~sv~~~~wP~~~~-~~d~~~-~~~~~~~~~~~~~ 808 (809)
||||+||++|++|. +.+.|++.+.||. +. ..++.. +..++.++.++..
T Consensus 80 ~~P~~aEeiw~~l~~~~~~~~~si~~~~~p~-~~~~~~~~~~~~~~~~~~~v~~~ 133 (153)
T PF08264_consen 80 FMPFIAEEIWQRLKSEKLGEKSSIFLEKWPE-DPEFIDEELEEEAFEILKEVVQV 133 (153)
T ss_dssp TSHHHHHHHHHHCTTHHTTSSSSGGGS------GGGGHHHH-HHHHHHHHHHHHH
T ss_pred CCcHHHHHHHHHhhhccCCCCCeeeeCCCCC-ChhhhcHHHHHHHHHHHHHHHHH
Confidence 99999999997652 2347899999998 53 345555 6677776665543
No 72
>cd07962 Anticodon_Ia_Val Anticodon-binding domain of valyl tRNA synthetases. This domain is found in valyl tRNA synthetases (ValRS), which belong to the class Ia aminoacyl tRNA synthetases. It lies C-terminal to the catalytic core domain, and recognizes and specifically binds to the tRNA anticodon. ValRS catalyzes the transfer of valine to the 3'-end of its tRNA.
Probab=99.63 E-value=6.9e-15 Score=139.99 Aligned_cols=135 Identities=42% Similarity=0.879 Sum_probs=108.8
Q ss_pred ccHHHHHHHHHHHHHHHHHHHHHHHhCCCCCchhhHHHHhhhccchhhhhcCCCchhHHHHHHHHHHHHHHHHHhhcCCh
Q 003578 624 LSIERLTANKAFTNKLWNAGKFILQNLPSQNDISRWEILLAYKFDEEECLCKAPLPECWVVSKLHMLIDTVTASYDKYFF 703 (809)
Q Consensus 624 fs~~~l~~~~~~~~kl~N~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~~d~~il~~l~~~~~~v~~a~e~~~f 703 (809)
||++.+.+.+++++|+||+.+++..+........ . +....+..|+++++.++++++++.++|++++|
T Consensus 1 ~~~~~~~~~~~~l~k~~~~~~~~~~~~~~~~~~~-----------~--~~~~~~~~d~~l~~~~~~~~~~~~~~~e~~~~ 67 (135)
T cd07962 1 FDEKRVEGGRNFCNKLWNAARFVLMNLEDDDEPE-----------E--DPESLSLADRWILSRLNKTVEEVTEALENYRF 67 (135)
T ss_pred CCHHHHHHHHHHHHHHHHHHHHHHHcccccCccc-----------c--ccccCCHHHHHHHHHHHHHHHHHHHHHHhcCH
Confidence 6889999999999999999998754322111100 0 11233456889999999999999999999999
Q ss_pred HHHHHHHHHHHHHhhHHHHHHHhhhhhhcCCCcHHHHHHHHHHHHHHHHHHHHhccchhHHHHHHHHHh
Q 003578 704 GDVGRETYDFFWSDFADWYIEASKARLYRSEYDSDAIIAQAVLLYIFENILKLLHPFMPFVTEELWQSL 772 (809)
Q Consensus 704 ~~a~~~i~~f~~~~~~n~Yi~~~k~~l~~~~~~~~~~~~~~~l~~vl~~l~~lL~P~~P~~aeeiw~~L 772 (809)
++|++.+++++.++++|+|++..+||...+ +.....+...++..+++.++++|+|||||+|+++|++|
T Consensus 68 ~~al~~i~~~~~~~~~N~Yi~~~~pW~~~~-~~~~~~~~~~~~~~~l~~l~~lL~P~~P~~ae~l~~~L 135 (135)
T cd07962 68 SEAATALYEFFWNDFCDWYLELVKPRLYGE-DEEEKKAARATLYYVLETILRLLHPFMPFITEELWQRL 135 (135)
T ss_pred HHHHHHHHHHHHHHHhHHHHHHhhHHHcCC-ChHHHHHHHHHHHHHHHHHHHHHCccccHHHHHHHhcC
Confidence 999999999985559999999999997643 33345567788999999999999999999999999875
No 73
>PF00750 tRNA-synt_1d: tRNA synthetases class I (R); InterPro: IPR015945 The aminoacyl-tRNA synthetases (6.1.1. from EC) catalyse the attachment of an amino acid to its cognate transfer RNA molecule in a highly specific two-step reaction. These proteins differ widely in size and oligomeric state, and have limited sequence homology []. The 20 aminoacyl-tRNA synthetases are divided into two classes, I and II. Class I aminoacyl-tRNA synthetases contain a characteristic Rossman fold catalytic domain and are mostly monomeric []. Class II aminoacyl-tRNA synthetases share an anti-parallel beta-sheet fold flanked by alpha-helices [], and are mostly dimeric or multimeric, containing at least three conserved regions [, , ]. However, tRNA binding involves an alpha-helical structure that is conserved between class I and class II synthetases. In reactions catalysed by the class I aminoacyl-tRNA synthetases, the aminoacyl group is coupled to the 2'-hydroxyl of the tRNA, while, in class II reactions, the 3'-hydroxyl site is preferred. The synthetases specific for arginine, cysteine, glutamic acid, glutamine, isoleucine, leucine, methionine, tyrosine, tryptophan and valine belong to class I synthetases. The synthetases specific for alanine, asparagine, aspartic acid, glycine, histidine, lysine, phenylalanine, proline, serine, and threonine belong to class-II synthetases []. Based on their mode of binding to the tRNA acceptor stem, both classes of tRNA synthetases have been subdivided into three subclasses, designated 1a, 1b, 1c and 2a, 2b, 2c. This entry represents the core region of arginyl-tRNA synthetase (6.1.1.19 from EC), which has been crystallized and preliminary X-ray crystallographic analysis of yeast arginyl-tRNA synthetase-yeast tRNAArg complexes is available []. ; GO: 0000166 nucleotide binding, 0004814 arginine-tRNA ligase activity, 0005524 ATP binding, 0006420 arginyl-tRNA aminoacylation, 0005737 cytoplasm; PDB: 2ZUE_A 2ZUF_A 3FNR_A 1IQ0_A 1F7V_A 1F7U_A 1BS2_A 3GDZ_B.
Probab=99.63 E-value=2.1e-15 Score=166.26 Aligned_cols=151 Identities=25% Similarity=0.280 Sum_probs=95.6
Q ss_pred HHHhcCCCCCCCCCCCCCEEEeCCCCCCCCCCcchhhHHHHHHHHHHHHHHHCCCcccccCCCCCCCCchHHHHH---HH
Q 003578 74 WWESQGYFKPNFERGSDPFVISMPPPNVTGSLHMGHAMFVTLEDIMVRYHRMKGRPTLWLPGTDHAGIATQLVVE---KM 150 (809)
Q Consensus 74 ~W~~~~~f~~~~~~~~~~f~i~~~pPy~nG~lHiGH~~~~~~~Di~~Ry~rm~G~~V~~~~G~D~~Gl~~~~~~e---~~ 150 (809)
.-++...| .....++++.+|...-|||+|+|||||+|+.+++|+++|-++..||+|.-..-..+.|..+-..+. +.
T Consensus 5 il~~~~~y-~~~~~~~~kv~VE~sSpNp~kplHvGHlR~~iiGd~laril~~~G~~V~r~nyigD~G~Q~~~l~~~~~~~ 83 (354)
T PF00750_consen 5 ILEKGEEY-GSEKGKGKKVVVEFSSPNPTKPLHVGHLRNTIIGDSLARILEAAGYDVTRENYIGDWGTQIGLLAASYKKF 83 (354)
T ss_dssp HHHHGGGT-T--TTTSEEEEEEE---BTTSS-BHHHHHHHHHHHHHHHHHHHTTEEEEEEEEEBTTSHHHHHHHHHHHHH
T ss_pred HHhcchhc-ccccCCCCEEEEEecCCCCCCCCcCCcchhhhhhHHHHHHHHHcCCeeeeEEEECCCCHHHHHHHHHHHhh
Confidence 34455667 333445678999999999999999999999999999999999999999998888888865432111 00
Q ss_pred H------------------------HHcCC---Ccccc---CHHHHHH-------HHHHHHHHHHHHHHHHHHHhccccc
Q 003578 151 L------------------------AAEGI---KRVEL---SRDEFTK-------RVWEWKEKYGGTITSQIKRLGASCD 193 (809)
Q Consensus 151 ~------------------------~~~g~---~~~~~---~~~~f~~-------~~~~~~~~~~~~~~~~l~~lgi~~D 193 (809)
. ..... .+.++ .++.|.+ ....|.....+.++++++++|+.+|
T Consensus 84 ~~~~~~~~~~~~~l~~~Y~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~le~gd~~~~~~~~~~~~~~~k~~l~~l~i~fD 163 (354)
T PF00750_consen 84 GDEELLEEDPIKHLEDLYVGANKRDEADEIAEKEPEELEEEAREYLKKLEQGDEEFRELWQKYILEWSKETLQRLYIRFD 163 (354)
T ss_dssp HHHHTSHSSCHHHHHHHHHHHHHHHHHTTCSSGCCCCHHHHHHHHHHHHHHCCTTHHHHHHHHHHHHHHHHHHHTT---S
T ss_pred hhhhhcccccccchhhhhhhhhhhhhhhhhccccccccccccceeeeecccccHHHHHHHHHHHHHHHHHHHHHHHHHhC
Confidence 0 00000 01111 0111111 1112444477788999999999999
Q ss_pred -CCCccccCChhhHHHHHHHHHHHHHcCceeecCcc
Q 003578 194 -WTRERFTLDEQLSRAVVEAFIRLHEKGLIYQGSYM 228 (809)
Q Consensus 194 -w~~~~~T~d~~~~~~v~~~f~~L~~~Gliy~~~~~ 228 (809)
|..+ .+..+...+..++.+|.++|++|+....
T Consensus 164 v~~~E---~Es~~~~~v~~vl~~L~e~g~~~~~dGa 196 (354)
T PF00750_consen 164 VWFDE---SESFYSGKVDEVLERLKEKGLLYESDGA 196 (354)
T ss_dssp EEEEH---CHHHHTTHHHHHHHHHHCTTTEEEETTE
T ss_pred cCccc---chhhhhhHHHHHHHHHHhCCcEEecCCc
Confidence 6543 3444667789999999999999986654
No 74
>cd07959 Anticodon_Ia_Leu_AEc Anticodon-binding domain of archaeal and eukaryotic cytoplasmic leucyl tRNA synthetases. This domain is found in leucyl tRNA synthetases (LeuRS), which belong to the class Ia aminoacyl tRNA synthetases. It lies C-terminal to the catalytic core domain. In contrast to other class Ia enzymes, the anticodon is not used as an identity element in LeuRS (with exceptions such as Saccharomyces cerevisiae and some other eukaryotes). No anticodon-binding site can be defined for this family, which includes archaeal and eukaryotic cytoplasmic members. LeuRS catalyzes the transfer of leucine to the 3'-end of its tRNA.
Probab=99.55 E-value=6.7e-14 Score=129.58 Aligned_cols=116 Identities=23% Similarity=0.477 Sum_probs=95.1
Q ss_pred ccHHHHHHHHHHHHHHHHHHHHHHHhCCCCCchhhHHHHhhhccchhhhhcCCCchhHHHHHHHHHHHHHHHHHhhcCCh
Q 003578 624 LSIERLTANKAFTNKLWNAGKFILQNLPSQNDISRWEILLAYKFDEEECLCKAPLPECWVVSKLHMLIDTVTASYDKYFF 703 (809)
Q Consensus 624 fs~~~l~~~~~~~~kl~N~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~~d~~il~~l~~~~~~v~~a~e~~~f 703 (809)
|+.+.+.+..++++|+++++....+.. .+ . ..++..|+|++++++.+++++.++|++|+|
T Consensus 1 w~~~~~~~~~~~l~R~~~~~~~~~~~~---~~----------------~-~~~~~~d~~~~~~~~~~i~~v~~~~~~~~f 60 (117)
T cd07959 1 FREEEANSAILRLERFYELAEELIETE---GE----------------L-EELTFIDRWLLSRLNRLIKETTEAYENMQF 60 (117)
T ss_pred CcHHHHHHHHHHHHHHHHHHHHHHhcc---CC----------------c-cccchhHHHHHHHHHHHHHHHHHHHHHhhH
Confidence 677888889999999999876532211 11 0 124567999999999999999999999999
Q ss_pred HHHHHHH-HHHHHHhhHHHHHHHhhhhhhcCCCcHHHHHHHHHHHHHHHHHHHHhccchhHHHHHHHHHh
Q 003578 704 GDVGRET-YDFFWSDFADWYIEASKARLYRSEYDSDAIIAQAVLLYIFENILKLLHPFMPFVTEELWQSL 772 (809)
Q Consensus 704 ~~a~~~i-~~f~~~~~~n~Yi~~~k~~l~~~~~~~~~~~~~~~l~~vl~~l~~lL~P~~P~~aeeiw~~L 772 (809)
++|++.+ +++. ..+|+|++..++| ....++..+++.++++|+||+||+||++|+.|
T Consensus 61 ~~a~~~~~~~~~--~~~~~Y~~~~~~~-----------~~~~~~~~~l~~~~~lL~P~~P~~aeeiw~~~ 117 (117)
T cd07959 61 REALKEGLYELQ--NDLDWYRERGGAG-----------MNKDLLRRFIEVWTRLLAPFAPHLAEEIWHEL 117 (117)
T ss_pred HHHHHHHHHHHH--HHHHHHHHHhCcc-----------chHHHHHHHHHHHHHHHcCcchHhHHHHHhhC
Confidence 9999997 7775 5799999988876 13468899999999999999999999999875
No 75
>cd07957 Anticodon_Ia_Met Anticodon-binding domain of methionyl tRNA synthetases. This domain is found in methionyl tRNA synthetases (MetRS), which belong to the class Ia aminoacyl tRNA synthetases. It lies C-terminal to the catalytic core domain, and recognizes and specifically binds to the tRNA anticodon (CAU). MetRS catalyzes the transfer of methionine to the 3'-end of its tRNA.
Probab=99.53 E-value=1.1e-13 Score=130.41 Aligned_cols=95 Identities=20% Similarity=0.257 Sum_probs=83.7
Q ss_pred CCchhHHHHHHHHHHHHHHHHHhhcCChHHHHHHHHHHHHHhhHHHHHHHhhhhhhcCC-CcHHHHHHHHHHHHHHHHHH
Q 003578 676 APLPECWVVSKLHMLIDTVTASYDKYFFGDVGRETYDFFWSDFADWYIEASKARLYRSE-YDSDAIIAQAVLLYIFENIL 754 (809)
Q Consensus 676 l~~~d~~il~~l~~~~~~v~~a~e~~~f~~a~~~i~~f~~~~~~n~Yi~~~k~~l~~~~-~~~~~~~~~~~l~~vl~~l~ 754 (809)
+...|+|++++++++++++.++|++|+|++|++.+++|+ +++|+|++..|||...++ +....+....++..+++.++
T Consensus 34 ~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~--~~~n~y~~~~kpw~~~~~~~~~~~~~~l~~~~~~l~~~~ 111 (129)
T cd07957 34 LTEEDEELLEEAEELLEEVAEAMEELEFRKALEEIMELA--RAANKYIDETAPWKLAKEEDPERLATVLYVLLELLRILA 111 (129)
T ss_pred CCcccHHHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHH--HHHHhhhccCCCHHHHccCCHHHHHHHHHHHHHHHHHHH
Confidence 455789999999999999999999999999999999997 689999999999988754 32344556678888999999
Q ss_pred HHhccchhHHHHHHHHHh
Q 003578 755 KLLHPFMPFVTEELWQSL 772 (809)
Q Consensus 755 ~lL~P~~P~~aeeiw~~L 772 (809)
++|+|||||+||++|+.|
T Consensus 112 ~lL~P~~P~~aeei~~~l 129 (129)
T cd07957 112 ILLSPFMPETAEKILDQL 129 (129)
T ss_pred HHhcCCCChHHHHHHHhC
Confidence 999999999999999875
No 76
>cd07958 Anticodon_Ia_Leu_BEm Anticodon-binding domain of bacterial and eukaryotic mitochondrial leucyl tRNA synthetases. This domain is found in leucyl tRNA synthetases (LeuRS), which belong to the class Ia aminoacyl tRNA synthetases. It lies C-terminal to the catalytic core domain. In contrast to other class Ia enzymes, the anticodon is not used as an identity element in LeuRS (with exceptions such as Saccharomyces cerevisiae and some other eukaryotes). No anticodon-binding site can be defined for this family, which includes bacterial and eukaryotic mitochondrial members, as well as LeuRS from the archaeal Halobacteria. LeuRS catalyzes the transfer of leucine to the 3'-end of its tRNA.
Probab=99.46 E-value=6.4e-13 Score=122.82 Aligned_cols=117 Identities=23% Similarity=0.335 Sum_probs=93.3
Q ss_pred ccHHHHHHHHHHHHHHHHHHHHHHHhCCCCCchhhHHHHhhhccchhhhhcCCCchhHHHHHHHHHHHHHHHHHhhcCCh
Q 003578 624 LSIERLTANKAFTNKLWNAGKFILQNLPSQNDISRWEILLAYKFDEEECLCKAPLPECWVVSKLHMLIDTVTASYDKYFF 703 (809)
Q Consensus 624 fs~~~l~~~~~~~~kl~N~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~~d~~il~~l~~~~~~v~~a~e~~~f 703 (809)
|+++.+.+.+++++|+||++....+.. .+ ....+.+...|+|++++++++++++.++|++|+|
T Consensus 1 w~~~~~~~~~n~l~R~~~~~~~~~~~~---~~--------------~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~ 63 (117)
T cd07958 1 WSDSGVEGAYRFLNRVWRLVTELAEAL---AA--------------PAAAAELSEEDKELRRKLHKTIKKVTEDIERLRF 63 (117)
T ss_pred CCcchhHHHHHHHHHHHHHHHHHHhhc---cc--------------cccccccchhhHHHHHHHHHHHHHHHHHHhCCcc
Confidence 678889999999999999876533211 11 0000133457899999999999999999999999
Q ss_pred HHHHHHHHHHHHHhhHHHHHHHhhhhhhcCCCcHHHHHHHHHHHHHHHHHHHHhccchhHHHHHHHHHh
Q 003578 704 GDVGRETYDFFWSDFADWYIEASKARLYRSEYDSDAIIAQAVLLYIFENILKLLHPFMPFVTEELWQSL 772 (809)
Q Consensus 704 ~~a~~~i~~f~~~~~~n~Yi~~~k~~l~~~~~~~~~~~~~~~l~~vl~~l~~lL~P~~P~~aeeiw~~L 772 (809)
++|++.+++|+ ...|.|++..+| ...++..+++.++++|+|||||+||++|++|
T Consensus 64 ~~a~~~i~~~~--~~~n~~~~~~~p-------------~~~~~~~~l~~~~~lL~P~~P~~aeei~~~l 117 (117)
T cd07958 64 NTAIAALMELV--NALYKYKKKDAQ-------------HAAVLREALETLVLLLAPFAPHIAEELWEEL 117 (117)
T ss_pred hHHHHHHHHHH--HHHHHhhccccc-------------hHHHHHHHHHHHHHHHcccchHHHHHHHhhC
Confidence 99999999998 357888654332 4578889999999999999999999999875
No 77
>PF01921 tRNA-synt_1f: tRNA synthetases class I (K); InterPro: IPR002904 The aminoacyl-tRNA synthetases (6.1.1. from EC) catalyse the attachment of an amino acid to its cognate transfer RNA molecule in a highly specific two-step reaction. These proteins differ widely in size and oligomeric state, and have limited sequence homology []. The 20 aminoacyl-tRNA synthetases are divided into two classes, I and II. Class I aminoacyl-tRNA synthetases contain a characteristic Rossman fold catalytic domain and are mostly monomeric []. Class II aminoacyl-tRNA synthetases share an anti-parallel beta-sheet fold flanked by alpha-helices [], and are mostly dimeric or multimeric, containing at least three conserved regions [, , ]. However, tRNA binding involves an alpha-helical structure that is conserved between class I and class II synthetases. In reactions catalysed by the class I aminoacyl-tRNA synthetases, the aminoacyl group is coupled to the 2'-hydroxyl of the tRNA, while, in class II reactions, the 3'-hydroxyl site is preferred. The synthetases specific for arginine, cysteine, glutamic acid, glutamine, isoleucine, leucine, methionine, tyrosine, tryptophan and valine belong to class I synthetases. The synthetases specific for alanine, asparagine, aspartic acid, glycine, histidine, lysine, phenylalanine, proline, serine, and threonine belong to class-II synthetases []. Based on their mode of binding to the tRNA acceptor stem, both classes of tRNA synthetases have been subdivided into three subclasses, designated 1a, 1b, 1c and 2a, 2b, 2c. Lysyl-tRNA synthetase (6.1.1.6 from EC) is an alpha 2 homodimer that belong to both class I and class II. In eubacteria and eukaryota lysyl-tRNA synthetases belong to class II in the same family as aspartyl tRNA synthetase. The class Ic lysyl-tRNA synthetase family is present in archaea and in a number of bacterial groups that include the alphaproteobacteria and spirochaetes[]. A refined crystal structures shows that the active site of LysU is shaped to position the substrates for the nucleophilic attack of the lysine carboxylate on the ATP alpha-phosphate. No residues are directly involved in catalysis, but a number of highly conserved amino acids and three metal ions coordinate the substrates and stabilise the pentavalent transition state. A loop close to the catalytic pocket, disordered in the lysine-bound structure, becomes ordered upon adenine binding [].; GO: 0000166 nucleotide binding, 0004824 lysine-tRNA ligase activity, 0005524 ATP binding, 0006430 lysyl-tRNA aminoacylation, 0005737 cytoplasm; PDB: 1IRX_A.
Probab=99.38 E-value=4.8e-13 Score=143.59 Aligned_cols=102 Identities=18% Similarity=0.297 Sum_probs=63.2
Q ss_pred CCCCEEEeCCCCCCCCCCcchhhHHHHHHHHHHHHHHHCCCcccccCCCCCCC--------CchHHHHHHHHHHcCCCcc
Q 003578 88 GSDPFVISMPPPNVTGSLHMGHAMFVTLEDIMVRYHRMKGRPTLWLPGTDHAG--------IATQLVVEKMLAAEGIKRV 159 (809)
Q Consensus 88 ~~~~f~i~~~pPy~nG~lHiGH~~~~~~~Di~~Ry~rm~G~~V~~~~G~D~~G--------l~~~~~~e~~~~~~g~~~~ 159 (809)
++..+++-++ -.|||.+|||+++..+.+|+++|-.|.+|++|.++..||+.- +|-+ ..+ +-.|++..
T Consensus 21 ~~~~~v~~sG-~sPSG~~HIGn~rEv~~~~~V~~al~~~g~~~r~i~~~DD~D~lRKvP~~~p~~-~~~---~ylg~Plt 95 (360)
T PF01921_consen 21 GKEPYVFASG-ISPSGLPHIGNFREVLRADMVARALRDRGKDVRLIYFSDDMDPLRKVPPNVPNP-ELE---KYLGKPLT 95 (360)
T ss_dssp --SEEEEEEE-E--SS---HHHHHHHHHHHHHHHHHHTTT-EEEEEEEE-TTSB-----TTS-CC--CC---CCTTSBTT
T ss_pred CCccEEEecC-CCCCCCcccccccchhhHHHHHHHHHHcCCCEEEEEEeecCCcccCCCCCCChH-HHH---HhcCCccc
Confidence 3568999999 799999999999999999999999999999999999999753 3311 000 01132211
Q ss_pred ccCHHHHHHHHHHHHHHHHHHHHHHHHHhcccccCCC
Q 003578 160 ELSRDEFTKRVWEWKEKYGGTITSQIKRLGASCDWTR 196 (809)
Q Consensus 160 ~~~~~~f~~~~~~~~~~~~~~~~~~l~~lgi~~Dw~~ 196 (809)
.+. +-|- .+..|++.+.+.+.+.|..||+.+.+-+
T Consensus 96 ~VP-dP~G-~~~SyaeH~~~~~~~~L~~~gie~e~~s 130 (360)
T PF01921_consen 96 RVP-DPFG-CHESYAEHFNAPFEEFLDEFGIEYEFIS 130 (360)
T ss_dssp TSB--TTS-SSSCHHHHHHHHHHHHHHTTT---EEEE
T ss_pred cCC-CCCC-CCccHHHHHHHHHHHHHHHcCCceEEEe
Confidence 110 1111 1346788999999999999999888544
No 78
>COG1384 LysS Lysyl-tRNA synthetase (class I) [Translation, ribosomal structure and biogenesis]
Probab=99.30 E-value=1.2e-11 Score=136.00 Aligned_cols=101 Identities=18% Similarity=0.267 Sum_probs=74.9
Q ss_pred CCEEEeCCCCCCCCCCcchhhHHHHHHHHHHHHHHHCCCcccccCCCCCCC--------CchHHHHHHHHHHcCCCcccc
Q 003578 90 DPFVISMPPPNVTGSLHMGHAMFVTLEDIMVRYHRMKGRPTLWLPGTDHAG--------IATQLVVEKMLAAEGIKRVEL 161 (809)
Q Consensus 90 ~~f~i~~~pPy~nG~lHiGH~~~~~~~Di~~Ry~rm~G~~V~~~~G~D~~G--------l~~~~~~e~~~~~~g~~~~~~ 161 (809)
..+++-++ -.|+|.+|||+++-.+.+|+++|-.|-+|+.|.+++=+|+.- +|-+-..++ -.|++...+
T Consensus 19 ~~~~v~tG-isPSG~~HIGn~rEv~t~d~V~ralr~~g~~~r~I~~~DD~D~lRkvp~~lp~~~~~e~---Ylg~Plt~I 94 (521)
T COG1384 19 DEYVVATG-ISPSGLIHIGNFREVLTADAVRRALRDRGDEVRLIYISDDYDPLRKVPRNLPDPEELEQ---YLGMPLTEI 94 (521)
T ss_pred CcEEEecC-cCCCCCcccccHHHHHHHHHHHHHHHHcCCceEEEEEccCCcccccCCCCCCChHHHHH---HcCCccccC
Confidence 67999999 799999999999999999999999999999999999998763 221112222 224433222
Q ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHHhcccccCCC
Q 003578 162 SRDEFTKRVWEWKEKYGGTITSQIKRLGASCDWTR 196 (809)
Q Consensus 162 ~~~~f~~~~~~~~~~~~~~~~~~l~~lgi~~Dw~~ 196 (809)
. .-|- -|..|++.+...+.+-|..+|+.+.|-+
T Consensus 95 P-dP~G-~~~Sya~hf~~~f~~~l~~~Gi~~E~~s 127 (521)
T COG1384 95 P-DPFG-CCDSYAEHFLRPFEEFLDEFGIEVEFVS 127 (521)
T ss_pred C-CCcc-ccchHHHHHHHHHHHHHHhcCCceEEEE
Confidence 1 0011 2557888999999999999998887544
No 79
>cd00802 class_I_aaRS_core catalytic core domain of class I amino acyl-tRNA synthetase. Class I amino acyl-tRNA synthetase (aaRS) catalytic core domain. These enzymes are mostly monomers which aminoacylate the 2'-OH of the nucleotide at the 3' of the appropriate tRNA. The core domain is based on the Rossman fold and is responsible for the ATP-dependent formation of the enzyme bound aminoacyl-adenylate. It contains the characteristic class I HIGH and KMSKS motifs, which are involved in ATP binding.
Probab=99.26 E-value=8.6e-12 Score=119.92 Aligned_cols=76 Identities=18% Similarity=0.204 Sum_probs=63.7
Q ss_pred eCCCCCCCCCCcchhhHHHHHHHHHHHHHHHCCCcccccCCCCCCCCchHHHHHHHHHHcCCCccccCHHHHHHHHHHHH
Q 003578 95 SMPPPNVTGSLHMGHAMFVTLEDIMVRYHRMKGRPTLWLPGTDHAGIATQLVVEKMLAAEGIKRVELSRDEFTKRVWEWK 174 (809)
Q Consensus 95 ~~~pPy~nG~lHiGH~~~~~~~Di~~Ry~rm~G~~V~~~~G~D~~Gl~~~~~~e~~~~~~g~~~~~~~~~~f~~~~~~~~ 174 (809)
+.+.|||||.+||||+++++++|+++||+|++|++|.++.|+|++|.++... +.+.+.+++ +|+
T Consensus 2 ~~~~p~~~~~~HlGh~~~~~~~d~~~r~lr~~G~~v~~~~~~dd~~~~~~~~----a~~~~~~~~------------~~~ 65 (143)
T cd00802 2 TFSGITPNGYLHIGHLRTIVTFDFLAQAYRKLGYKVRCIALIDDAGGLIGDP----ANKKGENAK------------AFV 65 (143)
T ss_pred EecCCCCCCCccHhHHHHHHHHHHHHHHHHHcCCCeEEEeeeCCCchHHHHH----HHhcCCCHH------------HHH
Confidence 4566999999999999999999999999999999999999999999985433 344565554 456
Q ss_pred HHHHHHHHHHHH
Q 003578 175 EKYGGTITSQIK 186 (809)
Q Consensus 175 ~~~~~~~~~~l~ 186 (809)
+.+.+.++++++
T Consensus 66 ~~~~~~~~~~~~ 77 (143)
T cd00802 66 ERWIERIKEDVE 77 (143)
T ss_pred HHHHHHHHHHHH
Confidence 778888888887
No 80
>PRK04156 gltX glutamyl-tRNA synthetase; Provisional
Probab=99.20 E-value=2.2e-09 Score=122.89 Aligned_cols=97 Identities=25% Similarity=0.285 Sum_probs=68.3
Q ss_pred EEeCCCCCCCCCCcchhhHHHHHHHHHHHHHHHCCCcccccCCCCCCCCchHHHHHHHHHHcCCCccccCHHHHHHHHHH
Q 003578 93 VISMPPPNVTGSLHMGHAMFVTLEDIMVRYHRMKGRPTLWLPGTDHAGIATQLVVEKMLAAEGIKRVELSRDEFTKRVWE 172 (809)
Q Consensus 93 ~i~~~pPy~nG~lHiGH~~~~~~~Di~~Ry~rm~G~~V~~~~G~D~~Gl~~~~~~e~~~~~~g~~~~~~~~~~f~~~~~~ 172 (809)
+++=.+|.|||.||||||++.++.+.+|| + |+..|+.=+|+.--.+ .+.
T Consensus 102 V~tRFaPsPtG~LHIGharaalln~~~Ar--~---~~G~~iLRidDTDpk~-------------~R~------------- 150 (567)
T PRK04156 102 VVMRFAPNPSGPLHLGHARAAILNDEYAK--M---YGGKFILRFEDTDPRT-------------KRP------------- 150 (567)
T ss_pred EEEEeCCCCCCCccHHHHHHHHHHHHHHH--H---cCCEEEEeEccCCCCc-------------ccc-------------
Confidence 55556799999999999999999999999 3 3444444444421110 000
Q ss_pred HHHHHHHHHHHHHHHhcccccCCCccccCChhhHHHHHHHHHHHHHcCceeec
Q 003578 173 WKEKYGGTITSQIKRLGASCDWTRERFTLDEQLSRAVVEAFIRLHEKGLIYQG 225 (809)
Q Consensus 173 ~~~~~~~~~~~~l~~lgi~~Dw~~~~~T~d~~~~~~v~~~f~~L~~~Gliy~~ 225 (809)
...+.+.|.++|+.||+ +|+..++ ..++...-.+...+|.++|++|..
T Consensus 151 -~~e~~~~I~edL~wLGl--~wD~~~~--qSdr~~~y~~~a~~Li~~G~AY~C 198 (567)
T PRK04156 151 -DPEAYDMILEDLKWLGV--KWDEVVI--QSDRLEIYYEYARKLIEMGGAYVC 198 (567)
T ss_pred -hHHHHHHHHHHHHHcCC--CCCCccC--cccCHHHHHHHHHHHHHcCCCccC
Confidence 13556789999999998 5555443 345667778888999999999854
No 81
>cd07375 Anticodon_Ia_like Anticodon-binding domain of class Ia aminoacyl tRNA synthetases and similar domains. This domain is found in a variety of class Ia aminoacyl tRNA synthetases, C-terminal to the catalytic core domain. It recognizes and specifically binds to the anticodon of the tRNA. Aminoacyl tRNA synthetases catalyze the transfer of cognate amino acids to the 3'-end of their tRNAs by specifically recognizing cognate from non-cognate amino acids. Members include valyl-, leucyl-, isoleucyl-, cysteinyl-, arginyl-, and methionyl-tRNA synthethases. This superfamily also includes a domain from MshC, an enzyme in the mycothiol biosynthetic pathway.
Probab=99.11 E-value=1.2e-09 Score=100.43 Aligned_cols=116 Identities=22% Similarity=0.279 Sum_probs=90.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhCCCCCchhhHHHHhhhccchhhhhcCCCchhHHHHHHHHHHHHHHHHHhhcCChHHH
Q 003578 627 ERLTANKAFTNKLWNAGKFILQNLPSQNDISRWEILLAYKFDEEECLCKAPLPECWVVSKLHMLIDTVTASYDKYFFGDV 706 (809)
Q Consensus 627 ~~l~~~~~~~~kl~N~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~~d~~il~~l~~~~~~v~~a~e~~~f~~a 706 (809)
+.+.+..+++|++||+++++.....+..+ ..+.......|+|++++++.+++++.++|++|+|++|
T Consensus 2 ~~v~~~~~~~n~~~r~~~~~~~~~~~~~~--------------~~~~~~~~~~d~~l~~~~~~~~~~~~~~~e~~~~~~a 67 (117)
T cd07375 2 ERLKQARAFLNRLYRLLSFFRKALGGTQP--------------KWDNELLEEADRELLARLQEFIKRTTNALEALDPTTA 67 (117)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHhcCCCCC--------------CcChhhcCHhhHHHHHHHHHHHHHHHHHHHhCCHHHH
Confidence 56778889999999999886654432211 0000112346899999999999999999999999999
Q ss_pred HHHHHHHHHHhhHHHHHHHhhhhhhcCCCcHHHHHHHHHHHHHHHHHHHHhccch
Q 003578 707 GRETYDFFWSDFADWYIEASKARLYRSEYDSDAIIAQAVLLYIFENILKLLHPFM 761 (809)
Q Consensus 707 ~~~i~~f~~~~~~n~Yi~~~k~~l~~~~~~~~~~~~~~~l~~vl~~l~~lL~P~~ 761 (809)
++.+++|+. .. |+|++..+||.+.+ .....+..++..++..++++|+|||
T Consensus 68 ~~~i~~~~~-~~-n~y~~~~~pw~~~~---~~~~~~~~~~~~~l~~l~~lL~P~~ 117 (117)
T cd07375 68 VQELFKFTN-EL-NWYLDELKPALQTE---ELREAVLAVLRAALVVLTKLLAPFT 117 (117)
T ss_pred HHHHHHHHH-hc-cHHHHHhhHHHcCc---hhHHHHHHHHHHHHHHHHHHHcCCC
Confidence 999999983 33 99999999998765 2344566788999999999999996
No 82
>TIGR00464 gltX_bact glutamyl-tRNA synthetase, bacterial family. The glutamyl-tRNA synthetases of the eukaryotic cytosol and of the Archaea are more similar to glutaminyl-tRNA synthetases than to bacterial glutamyl-tRNA synthetases. This alignment models just the bacterial and mitochondrial forms of the enzyme. In many species, the charging of tRNA(gln) proceeds first through misacylation with Glu and then transamidation. For this reason, glutamyl-tRNA synthetases may act on both tRNA(gln) and tRNA(glu). This model is highly specific. Proteins with positive scores below the trusted cutoff may be fragments rather than full-length sequences.
Probab=99.01 E-value=2.7e-08 Score=113.38 Aligned_cols=95 Identities=24% Similarity=0.235 Sum_probs=64.4
Q ss_pred EeCCCCCCCCCCcchhhHHHHHHHHHHHHHHHCCCcccccCCCCCCCCchHHHHHHHHHHcCCCccccCHHHHHHHHHHH
Q 003578 94 ISMPPPNVTGSLHMGHAMFVTLEDIMVRYHRMKGRPTLWLPGTDHAGIATQLVVEKMLAAEGIKRVELSRDEFTKRVWEW 173 (809)
Q Consensus 94 i~~~pPy~nG~lHiGH~~~~~~~Di~~Ry~rm~G~~V~~~~G~D~~Gl~~~~~~e~~~~~~g~~~~~~~~~~f~~~~~~~ 173 (809)
++=.+|.|||.|||||+++.++.-.+||- ..|.=++.+=-+|. .. .
T Consensus 3 ~~RfAPsPtG~lHiG~~rtal~n~l~Ar~--~~G~~iLRieDtD~--------------------~R------------~ 48 (470)
T TIGR00464 3 RTRFAPSPTGYLHIGGARTALFNYLFAKH--TGGEFILRIEDTDL--------------------ER------------N 48 (470)
T ss_pred eEeeCCCCCCcccHHHHHHHHHHHHHHHH--cCCEEEEEeCcCCC--------------------cc------------C
Confidence 34457999999999999999999999883 44544443333332 10 1
Q ss_pred HHHHHHHHHHHHHHhcccccCCCccccCChhhHHHHHHHHHHHHHcCceeec
Q 003578 174 KEKYGGTITSQIKRLGASCDWTRERFTLDEQLSRAVVEAFIRLHEKGLIYQG 225 (809)
Q Consensus 174 ~~~~~~~~~~~l~~lgi~~Dw~~~~~T~d~~~~~~v~~~f~~L~~~Gliy~~ 225 (809)
...+.+.|.+.|+.||+..| ..+|+.++ ..+.-+.+..+|.++|++|..
T Consensus 49 ~~~~~~~i~~~L~wlGl~~d-e~~~~QS~--r~~~y~~~~~~L~~~g~aY~C 97 (470)
T TIGR00464 49 IEEAEEAILEGLKWLGISWD-EGPYYQSQ--RLDIYKKYAKELLEEGLAYRC 97 (470)
T ss_pred ChHHHHHHHHHHHHCCCCCC-CCeeehhC--CHHHHHHHHHHHHHcCCEEec
Confidence 13577789999999997544 14444332 233446777899999999953
No 83
>PRK01406 gltX glutamyl-tRNA synthetase; Reviewed
Probab=98.87 E-value=1.4e-07 Score=107.69 Aligned_cols=96 Identities=25% Similarity=0.198 Sum_probs=65.7
Q ss_pred EEeCCCCCCCCCCcchhhHHHHHHHHHHHHHHHCCCcccccCCCCCCCCchHHHHHHHHHHcCCCccccCHHHHHHHHHH
Q 003578 93 VISMPPPNVTGSLHMGHAMFVTLEDIMVRYHRMKGRPTLWLPGTDHAGIATQLVVEKMLAAEGIKRVELSRDEFTKRVWE 172 (809)
Q Consensus 93 ~i~~~pPy~nG~lHiGH~~~~~~~Di~~Ry~rm~G~~V~~~~G~D~~Gl~~~~~~e~~~~~~g~~~~~~~~~~f~~~~~~ 172 (809)
+.+=.+|.|||.|||||+++.+..-.+||- ..|.=++.+=-+|. ..
T Consensus 5 v~~RfAPSPtG~lHiG~~rtal~n~l~Ar~--~~G~fiLRieDtD~--------------------~R------------ 50 (476)
T PRK01406 5 VRTRFAPSPTGYLHIGGARTALFNWLFARH--HGGKFILRIEDTDQ--------------------ER------------ 50 (476)
T ss_pred eeEEeCCCCCCcccHHHHHHHHHHHHHHHH--cCCEEEEEeCcCCC--------------------CC------------
Confidence 455567999999999999999999988885 34433333333332 11
Q ss_pred HHHHHHHHHHHHHHHhcccccCCC-------ccccCChhhHHHHHHHHHHHHHcCceeec
Q 003578 173 WKEKYGGTITSQIKRLGASCDWTR-------ERFTLDEQLSRAVVEAFIRLHEKGLIYQG 225 (809)
Q Consensus 173 ~~~~~~~~~~~~l~~lgi~~Dw~~-------~~~T~d~~~~~~v~~~f~~L~~~Gliy~~ 225 (809)
.+..+.+.|.+.|+.||+..|= - +|+.+ +....-++...+|.++|++|..
T Consensus 51 ~~~~~~~~i~~~L~wlGl~~De-~p~~~~~gpy~QS--~r~~~y~~~~~~L~~~g~aY~C 107 (476)
T PRK01406 51 STEEAEEAILEGLKWLGLDWDE-GPDGGPYGPYRQS--ERLDIYKEYAEQLLEEGKAYYC 107 (476)
T ss_pred CChHHHHHHHHHHHHCCCCCCC-CCccCCCCceehh--cCHHHHHHHHHHHHHcCCeeec
Confidence 1246778899999999976551 1 24432 3345567788899999999963
No 84
>TIGR00463 gltX_arch glutamyl-tRNA synthetase, archaeal and eukaryotic family. The glutamyl-tRNA synthetases of the eukaryotic cytosol and of the Archaea are more similar to glutaminyl-tRNA synthetases than to bacterial glutamyl-tRNA synthetases. This alignment models just the eukaryotic cytosolic and archaeal forms of the enzyme. In some eukaryotes, the glutamyl-tRNA synthetase is part of a longer, multifunctional aminoacyl-tRNA ligase. In many species, the charging of tRNA(gln) proceeds first through misacylation with Glu and then transamidation. For this reason, glutamyl-tRNA synthetases may act on both tRNA(gln) and tRNA(glu).
Probab=98.83 E-value=5.9e-07 Score=103.10 Aligned_cols=98 Identities=24% Similarity=0.293 Sum_probs=71.1
Q ss_pred CEEEeCCCCCCCCCCcchhhHHHHHHHHHHHHHHHCCCcccccCCCCCCCCchHHHHHHHHHHcCCCccccCHHHHHHHH
Q 003578 91 PFVISMPPPNVTGSLHMGHAMFVTLEDIMVRYHRMKGRPTLWLPGTDHAGIATQLVVEKMLAAEGIKRVELSRDEFTKRV 170 (809)
Q Consensus 91 ~f~i~~~pPy~nG~lHiGH~~~~~~~Di~~Ry~rm~G~~V~~~~G~D~~Gl~~~~~~e~~~~~~g~~~~~~~~~~f~~~~ 170 (809)
.-+++=.||.|||.||||||+..++.+.+|| ...| .++.=+|+.--+ +.
T Consensus 92 ~~vvtRFaPsPtG~LHiGharaalln~~~Ar--~~~G---~~iLRidDTDp~---------------R~----------- 140 (560)
T TIGR00463 92 GEVVMRFAPNPSGPLHIGHARAAILNQYFAK--KYKG---KLIIRFDDTDPR---------------RV----------- 140 (560)
T ss_pred CeeEEEeCCCCCCCccHHHHHHHHHHHHHHH--hcCC---EEEEEeCcCCcc---------------cc-----------
Confidence 3467777899999999999999999999997 2344 344334442111 00
Q ss_pred HHHHHHHHHHHHHHHHHhcccccCCCccccCChhhHHHHHHHHHHHHHcCceeecC
Q 003578 171 WEWKEKYGGTITSQIKRLGASCDWTRERFTLDEQLSRAVVEAFIRLHEKGLIYQGS 226 (809)
Q Consensus 171 ~~~~~~~~~~~~~~l~~lgi~~Dw~~~~~T~d~~~~~~v~~~f~~L~~~Gliy~~~ 226 (809)
..++.+.|.++|+.||+..| .. +...+|.....+...+|.++|++|...
T Consensus 141 ---~~e~~~~I~edL~wLGi~~d--~~--~~qSd~~~~y~~~a~~Li~~G~AY~C~ 189 (560)
T TIGR00463 141 ---KPEAYDMILEDLDWLGVKGD--EV--VYQSDRIEEYYDYCRKLIEMGKAYVCD 189 (560)
T ss_pred ---cHHHHHHHHHHHHHcCCCCC--cc--ccccccHHHHHHHHHHHHHcCCceeec
Confidence 13577889999999998754 43 344567777889999999999998754
No 85
>PRK12558 glutamyl-tRNA synthetase; Provisional
Probab=98.75 E-value=7.9e-07 Score=99.79 Aligned_cols=93 Identities=28% Similarity=0.317 Sum_probs=66.5
Q ss_pred EeCCCCCCCCCCcchhhHHHHHHHHHHHHHHHCCCcccccCCCCCCCCchHHHHHHHHHHcCCCccccCHHHHHHHHHHH
Q 003578 94 ISMPPPNVTGSLHMGHAMFVTLEDIMVRYHRMKGRPTLWLPGTDHAGIATQLVVEKMLAAEGIKRVELSRDEFTKRVWEW 173 (809)
Q Consensus 94 i~~~pPy~nG~lHiGH~~~~~~~Di~~Ry~rm~G~~V~~~~G~D~~Gl~~~~~~e~~~~~~g~~~~~~~~~~f~~~~~~~ 173 (809)
.+=.+|.|||.|||||+++.+..-.+||- ..|.=++.+=-+|. . .-
T Consensus 4 r~RFAPSPTG~lHiG~artAL~n~l~Ar~--~gG~fiLRIEDTD~--------------------~------------Rs 49 (445)
T PRK12558 4 ITRFAPSPTGYLHVGNARTALLNWLYARK--HGGKFILRIDDTDL--------------------E------------RS 49 (445)
T ss_pred eEEeCCCCCCcccHHHHHHHHHHHHHHHH--hCCEEEEEeccCCc--------------------c------------cc
Confidence 44456999999999999999988888774 34444444333332 1 01
Q ss_pred HHHHHHHHHHHHHHhccccc-CCCccccCChhhHHHHHHHHHHHHHcCceeec
Q 003578 174 KEKYGGTITSQIKRLGASCD-WTRERFTLDEQLSRAVVEAFIRLHEKGLIYQG 225 (809)
Q Consensus 174 ~~~~~~~~~~~l~~lgi~~D-w~~~~~T~d~~~~~~v~~~f~~L~~~Gliy~~ 225 (809)
.+.+.+.|.++|++||+.+| |. ...+.....+.+..+|.++|++|..
T Consensus 50 ~~~~~~~I~e~L~wLGI~~De~y-----~QSer~~~y~~~~e~L~e~G~AY~C 97 (445)
T PRK12558 50 KQEYADAIAEDLKWLGINWDRTF-----RQSDRFDRYDEAAEKLKAAGRLYPC 97 (445)
T ss_pred hHHHHHHHHHHHHHcCCCCCccc-----cHHHHHHHHHHHHHHHHHCCCEEEe
Confidence 24677889999999999888 42 2334446789999999999999953
No 86
>PRK05347 glutaminyl-tRNA synthetase; Provisional
Probab=98.72 E-value=3.4e-06 Score=96.24 Aligned_cols=97 Identities=24% Similarity=0.343 Sum_probs=65.9
Q ss_pred EEeCCCCCCCCCCcchhhHHHHHHHHHHHHHHHCCCcccccCCCCCCCCchHHHHHHHHHHcCCCccccCHHHHHHHHHH
Q 003578 93 VISMPPPNVTGSLHMGHAMFVTLEDIMVRYHRMKGRPTLWLPGTDHAGIATQLVVEKMLAAEGIKRVELSRDEFTKRVWE 172 (809)
Q Consensus 93 ~i~~~pPy~nG~lHiGH~~~~~~~Di~~Ry~rm~G~~V~~~~G~D~~Gl~~~~~~e~~~~~~g~~~~~~~~~~f~~~~~~ 172 (809)
+++=.||.|||.||||||++.++...+||- ..|.-++.+=-+| +..-
T Consensus 30 v~tRFaPsPtG~LHiG~ar~al~n~~~Ar~--~~G~~iLRieDTd--------------------~~r~----------- 76 (554)
T PRK05347 30 VHTRFPPEPNGYLHIGHAKSICLNFGLAQD--YGGKCNLRFDDTN--------------------PEKE----------- 76 (554)
T ss_pred eEEEeCCCCCCcccHHHHHHHHHHHHHHHH--hCCEEEEEECCCC--------------------CCcC-----------
Confidence 567778999999999999999999999985 3443333322222 2110
Q ss_pred HHHHHHHHHHHHHHHhcccccCCCccccCChhhHHHHHHHHHHHHHcCceeecC
Q 003578 173 WKEKYGGTITSQIKRLGASCDWTRERFTLDEQLSRAVVEAFIRLHEKGLIYQGS 226 (809)
Q Consensus 173 ~~~~~~~~~~~~l~~lgi~~Dw~~~~~T~d~~~~~~v~~~f~~L~~~Gliy~~~ 226 (809)
..++.+.|.++|+.||+..| ...++++ +|-....+.-.+|.++|++|...
T Consensus 77 -~~e~~~~I~~dL~wLGi~~d-~~~~~qS--~r~~~~y~~a~~Li~~G~AY~c~ 126 (554)
T PRK05347 77 -DQEYVDSIKEDVRWLGFDWS-GELRYAS--DYFDQLYEYAVELIKKGKAYVDD 126 (554)
T ss_pred -ChHHHHHHHHHHHHcCCCCC-CCceeee--cCHHHHHHHHHHHHHcCCEeeCC
Confidence 14677889999999997765 2334433 33333445557999999999754
No 87
>PLN03233 putative glutamate-tRNA ligase; Provisional
Probab=98.69 E-value=3.7e-06 Score=95.55 Aligned_cols=96 Identities=28% Similarity=0.412 Sum_probs=69.9
Q ss_pred EEeCCCCCCCCCCcchhhHHHHHHHHHHHHHHHCCCcccccCCCCCCCCchHHHHHHHHHHcCCCccccCHHHHHHHHHH
Q 003578 93 VISMPPPNVTGSLHMGHAMFVTLEDIMVRYHRMKGRPTLWLPGTDHAGIATQLVVEKMLAAEGIKRVELSRDEFTKRVWE 172 (809)
Q Consensus 93 ~i~~~pPy~nG~lHiGH~~~~~~~Di~~Ry~rm~G~~V~~~~G~D~~Gl~~~~~~e~~~~~~g~~~~~~~~~~f~~~~~~ 172 (809)
+++=.||.|||.||||||++.++...+||- ..|.-++.+=-+| +..
T Consensus 12 v~tRFAPsPtG~LHiGharaAlln~l~Ar~--~gG~~iLRiEDTD--------------------p~R------------ 57 (523)
T PLN03233 12 IVTRFPPEPSGYLHIGHAKAALLNDYYARR--YKGRLILRFDDTN--------------------PSK------------ 57 (523)
T ss_pred EEEeeCCCCCCcccHHHHHHHHHHHHHHHH--hCCEEEEEECCCC--------------------CCc------------
Confidence 667778999999999999999999999984 3454333332222 211
Q ss_pred HHHHHHHHHHHHHHHhcccccCCCccccCChhhHHHHHHHHHHHHHcCceeecC
Q 003578 173 WKEKYGGTITSQIKRLGASCDWTRERFTLDEQLSRAVVEAFIRLHEKGLIYQGS 226 (809)
Q Consensus 173 ~~~~~~~~~~~~l~~lgi~~Dw~~~~~T~d~~~~~~v~~~f~~L~~~Gliy~~~ 226 (809)
...++.+.|.++|+.||+..| ..+++ .+|-..-++...+|.++|++|...
T Consensus 58 ~~~e~~~~I~~dL~WLGl~wD--~~~~q--Sdr~~~y~~~a~~Li~~G~AY~C~ 107 (523)
T PLN03233 58 EKAEFEESIIEDLGKIEIKPD--SVSFT--SDYFEPIRCYAIILIEEGLAYMDD 107 (523)
T ss_pred cchHHHHHHHHHHHHhCCCCC--CCccc--cccHHHHHHHHHHHHHcCCeEecC
Confidence 124678889999999997654 54443 456667788899999999999753
No 88
>PRK12410 glutamylglutaminyl-tRNA synthetase; Provisional
Probab=98.69 E-value=2e-06 Score=96.13 Aligned_cols=91 Identities=15% Similarity=0.153 Sum_probs=63.9
Q ss_pred CCCCCCCCCcchhhHHHHHHHHHHHHHHHCCCcccccCCCCCCCCchHHHHHHHHHHcCCCccccCHHHHHHHHHHHHHH
Q 003578 97 PPPNVTGSLHMGHAMFVTLEDIMVRYHRMKGRPTLWLPGTDHAGIATQLVVEKMLAAEGIKRVELSRDEFTKRVWEWKEK 176 (809)
Q Consensus 97 ~pPy~nG~lHiGH~~~~~~~Di~~Ry~rm~G~~V~~~~G~D~~Gl~~~~~~e~~~~~~g~~~~~~~~~~f~~~~~~~~~~ 176 (809)
..|.|||.|||||+++.++.-.+||- ..|.=++.+=-+|. .. ...+
T Consensus 4 FAPSPTG~LHiG~artAL~n~l~Ar~--~gG~fiLRiEDTD~--------------------~R------------~~~e 49 (433)
T PRK12410 4 FAPSPTGDMHIGNLRAAIFNYIVAKQ--QNEDFLIRIEDTDK--------------------ER------------NIEG 49 (433)
T ss_pred cCCCCCCcccHHHHHHHHHHHHHHHH--cCCEEEEEeCcCCC--------------------Cc------------CChH
Confidence 46999999999999999999998875 34444444333332 10 1245
Q ss_pred HHHHHHHHHHHhcccccCCCccccCChhhHHHHHHHHHHHHHcCceeec
Q 003578 177 YGGTITSQIKRLGASCDWTRERFTLDEQLSRAVVEAFIRLHEKGLIYQG 225 (809)
Q Consensus 177 ~~~~~~~~l~~lgi~~Dw~~~~~T~d~~~~~~v~~~f~~L~~~Gliy~~ 225 (809)
+.+.|.+.|+.||+..| ..|+.+ +....-++...+|.++|.+|..
T Consensus 50 ~~~~I~~~L~WlGl~wD--e~y~QS--eR~~~Y~~~a~~Li~~G~AY~C 94 (433)
T PRK12410 50 KDKEILEILNLFGISWD--KLVYQS--ENLKFHRQMAEKLLSEKKAFAC 94 (433)
T ss_pred HHHHHHHHHHHcCCCCC--CCeehh--ccHHHHHHHHHHHHHcCCeeee
Confidence 67889999999997554 555543 3334556788999999999864
No 89
>PRK14703 glutaminyl-tRNA synthetase/YqeY domain fusion protein; Provisional
Probab=98.66 E-value=3.3e-06 Score=100.41 Aligned_cols=97 Identities=25% Similarity=0.301 Sum_probs=68.6
Q ss_pred EEeCCCCCCCCCCcchhhHHHHHHHHHHHHHHHCCCcccccCCCCCCCCchHHHHHHHHHHcCCCccccCHHHHHHHHHH
Q 003578 93 VISMPPPNVTGSLHMGHAMFVTLEDIMVRYHRMKGRPTLWLPGTDHAGIATQLVVEKMLAAEGIKRVELSRDEFTKRVWE 172 (809)
Q Consensus 93 ~i~~~pPy~nG~lHiGH~~~~~~~Di~~Ry~rm~G~~V~~~~G~D~~Gl~~~~~~e~~~~~~g~~~~~~~~~~f~~~~~~ 172 (809)
+++=.||.|||.||||||++.++...+||- ..|.-.+. +|+. +|..
T Consensus 32 v~tRFaPsPtG~lHiGhar~alln~~~A~~--~~G~~~LR---~eDT-----------------d~~r------------ 77 (771)
T PRK14703 32 VVTRFPPEPNGYLHIGHAKSILLNFGIARD--YGGRCHLR---MDDT-----------------NPET------------ 77 (771)
T ss_pred eEEEeCcCCCCcccHHHHHHHHHHHHHHHH--hCCEEEEE---eCCC-----------------CCCc------------
Confidence 677788999999999999999999999874 34433332 2322 1211
Q ss_pred HHHHHHHHHHHHHHHhcccccCCCccccCChhhHHHHHHHHHHHHHcCceeecC
Q 003578 173 WKEKYGGTITSQIKRLGASCDWTRERFTLDEQLSRAVVEAFIRLHEKGLIYQGS 226 (809)
Q Consensus 173 ~~~~~~~~~~~~l~~lgi~~Dw~~~~~T~d~~~~~~v~~~f~~L~~~Gliy~~~ 226 (809)
...++.+.|.++|+.||+.+|-. .|+ ..+|-..-.+...+|.++|++|...
T Consensus 78 ~~~e~~~~I~~dl~wLG~~wd~~-~~~--qS~~~~~y~~~a~~Li~~G~aY~c~ 128 (771)
T PRK14703 78 EDTEYVEAIKDDVRWLGFDWGEH-LYY--ASDYFERMYAYAEQLIKMGLAYVDS 128 (771)
T ss_pred CChHHHHHHHHHHHHcCCCCCCC-ceE--eecCHHHHHHHHHHHHHcCCcccCc
Confidence 01467888999999999765522 233 3456666778888999999998643
No 90
>PLN02907 glutamate-tRNA ligase
Probab=98.63 E-value=5.4e-06 Score=98.84 Aligned_cols=95 Identities=26% Similarity=0.399 Sum_probs=69.7
Q ss_pred EEEeCCCCCCCCCCcchhhHHHHHHHHHHHHHHHCCCcccccCCCCCCCCchHHHHHHHHHHcCCCccccCHHHHHHHHH
Q 003578 92 FVISMPPPNVTGSLHMGHAMFVTLEDIMVRYHRMKGRPTLWLPGTDHAGIATQLVVEKMLAAEGIKRVELSRDEFTKRVW 171 (809)
Q Consensus 92 f~i~~~pPy~nG~lHiGH~~~~~~~Di~~Ry~rm~G~~V~~~~G~D~~Gl~~~~~~e~~~~~~g~~~~~~~~~~f~~~~~ 171 (809)
=+++=.||.|||.||||||++.++...+|| +..|.-++.+=-+|- ..
T Consensus 213 ~v~tRFaPsPtG~LHiG~ar~al~n~~~Ar--~~~G~~iLR~eDTdp--------------------~r----------- 259 (722)
T PLN02907 213 KVCTRFPPEPSGYLHIGHAKAALLNQYFAR--RYKGKLIVRFDDTNP--------------------SK----------- 259 (722)
T ss_pred ceEEeeCCCCCCcccHHHHHHHHHHHHHHH--HhCCEEEEEecCCCC--------------------Cc-----------
Confidence 367778899999999999999999999998 345544433322222 11
Q ss_pred HHHHHHHHHHHHHHHHhcccccCCCccccCChhhHHHHHHHHHHHHHcCceee
Q 003578 172 EWKEKYGGTITSQIKRLGASCDWTRERFTLDEQLSRAVVEAFIRLHEKGLIYQ 224 (809)
Q Consensus 172 ~~~~~~~~~~~~~l~~lgi~~Dw~~~~~T~d~~~~~~v~~~f~~L~~~Gliy~ 224 (809)
-..++.+.|.++|+.||+..| ..+++ .+|-..-.+...+|.++|++|.
T Consensus 260 -~~~e~~~~I~~dl~wLG~~~d--~~~~q--S~r~~~y~~~a~~Li~~G~aY~ 307 (722)
T PLN02907 260 -ESDEFVENILKDIETLGIKYD--AVTYT--SDYFPQLMEMAEKLIKEGKAYV 307 (722)
T ss_pred -CChHHHHHHHHHHHHcCCCCC--Ccccc--cccHHHHHHHHHHHHHcCCeee
Confidence 014678889999999997655 54444 4555667888999999999996
No 91
>PTZ00437 glutaminyl-tRNA synthetase; Provisional
Probab=98.63 E-value=2.3e-06 Score=97.48 Aligned_cols=96 Identities=23% Similarity=0.232 Sum_probs=67.6
Q ss_pred EEeCCCCCCCCCCcchhhHHHHHHHHHHHHHHHCCCcccccCCCCCCCCchHHHHHHHHHHcCCCccccCHHHHHHHHHH
Q 003578 93 VISMPPPNVTGSLHMGHAMFVTLEDIMVRYHRMKGRPTLWLPGTDHAGIATQLVVEKMLAAEGIKRVELSRDEFTKRVWE 172 (809)
Q Consensus 93 ~i~~~pPy~nG~lHiGH~~~~~~~Di~~Ry~rm~G~~V~~~~G~D~~Gl~~~~~~e~~~~~~g~~~~~~~~~~f~~~~~~ 172 (809)
+++=.||.|||.||||||++.++...+||. ..|.-++.+=-+| +...
T Consensus 52 v~tRFaPsPtG~LHiGharaalln~~~Ar~--~gG~~iLRiEDTD--------------------p~r~----------- 98 (574)
T PTZ00437 52 PYFRFPPEPNGFLHIGHAKSMNLNFGSARA--HGGKCYLRYDDTN--------------------PETE----------- 98 (574)
T ss_pred EEEEeCCCCCCcccHHHHHHHHHHHHHHHH--hCCEEEEEECCCC--------------------cccc-----------
Confidence 456667999999999999999999999985 3443333322222 2110
Q ss_pred HHHHHHHHHHHHHHHhcccccCCCccccCChhhHHHHHHHHHHHHHcCceeecC
Q 003578 173 WKEKYGGTITSQIKRLGASCDWTRERFTLDEQLSRAVVEAFIRLHEKGLIYQGS 226 (809)
Q Consensus 173 ~~~~~~~~~~~~l~~lgi~~Dw~~~~~T~d~~~~~~v~~~f~~L~~~Gliy~~~ 226 (809)
..++.+.|.++|+.||+..| ..+ ....|.+...+...+|.++|++|...
T Consensus 99 -~~e~~~~I~~dL~wLGi~~D--~~~--~qS~y~~~~ye~A~~Li~~G~AY~C~ 147 (574)
T PTZ00437 99 -EQVYIDAIMEMVKWMGWKPD--WVT--FSSDYFDQLHEFAVQLIKDGKAYVDH 147 (574)
T ss_pred -ChHHHHHHHHHHHHcCCCCC--CCC--cCchhHHHHHHHHHHHHHcCCEEEcC
Confidence 14677889999999997655 433 33455556667778999999999754
No 92
>PRK14895 gltX glutamyl-tRNA synthetase; Provisional
Probab=98.63 E-value=5e-06 Score=94.51 Aligned_cols=95 Identities=26% Similarity=0.315 Sum_probs=67.2
Q ss_pred EeCCCCCCCCCCcchhhHHHHHHHHHHHHHHHCCCcccccCCCCCCCCchHHHHHHHHHHcCCCccccCHHHHHHHHHHH
Q 003578 94 ISMPPPNVTGSLHMGHAMFVTLEDIMVRYHRMKGRPTLWLPGTDHAGIATQLVVEKMLAAEGIKRVELSRDEFTKRVWEW 173 (809)
Q Consensus 94 i~~~pPy~nG~lHiGH~~~~~~~Di~~Ry~rm~G~~V~~~~G~D~~Gl~~~~~~e~~~~~~g~~~~~~~~~~f~~~~~~~ 173 (809)
.+=..|.|||.|||||+++.++.-.+|| +..|.=++.+=-+|.- + .
T Consensus 6 rtRFAPSPTG~lHiG~artAL~n~l~Ar--~~gG~fiLRIEDTD~~------------------R--------------~ 51 (513)
T PRK14895 6 ITRFAPSPTGFLHIGSARTALFNYLFAR--HHNGKFLLRIEDTDKE------------------R--------------S 51 (513)
T ss_pred eEeeCCCCCCCccHHHHHHHHHHHHHHH--HcCCEEEEEECCCCcc------------------c--------------c
Confidence 4455699999999999999999999998 4566555554444331 0 1
Q ss_pred HHHHHHHHHHHHHHhcccccCCCccccCChhhHHHHHHHHHHHHHcCceeec
Q 003578 174 KEKYGGTITSQIKRLGASCDWTRERFTLDEQLSRAVVEAFIRLHEKGLIYQG 225 (809)
Q Consensus 174 ~~~~~~~~~~~l~~lgi~~Dw~~~~~T~d~~~~~~v~~~f~~L~~~Gliy~~ 225 (809)
..++.+.|.+.|+.||+..| ..+|+.++ ....-+....+|.++|.+|..
T Consensus 52 ~~~~~~~i~~~L~WLGl~wD-e~py~QSe--R~~~Y~~~a~~Li~~G~AY~C 100 (513)
T PRK14895 52 TKEAVEAIFSGLKWLGLDWN-GEVIFQSK--RNNLYKEAALKLLQNGKAYYC 100 (513)
T ss_pred ChHHHHHHHHHHHHcCCCCC-CCceeEeC--cHHHHHHHHHHHHHcCCeEEe
Confidence 24567789999999996544 13455433 334556788899999999964
No 93
>PTZ00402 glutamyl-tRNA synthetase; Provisional
Probab=98.60 E-value=8.5e-06 Score=93.71 Aligned_cols=93 Identities=26% Similarity=0.483 Sum_probs=67.5
Q ss_pred EEeCCCCCCCCCCcchhhHHHHHHHHHHHHHHHCCCcccccCCCCCCCCchHHHHHHHHHHcCCCccccCHHHHHHHHHH
Q 003578 93 VISMPPPNVTGSLHMGHAMFVTLEDIMVRYHRMKGRPTLWLPGTDHAGIATQLVVEKMLAAEGIKRVELSRDEFTKRVWE 172 (809)
Q Consensus 93 ~i~~~pPy~nG~lHiGH~~~~~~~Di~~Ry~rm~G~~V~~~~G~D~~Gl~~~~~~e~~~~~~g~~~~~~~~~~f~~~~~~ 172 (809)
+++=.||.|||.||||||++.++...+||- ..|.-++.+ |+ .+|..
T Consensus 53 v~tRFAPsPtGyLHIGharaAllN~l~Ar~--~gG~~iLRi---ED-----------------TDp~R------------ 98 (601)
T PTZ00402 53 VVTRFPPEASGFLHIGHAKAALINSMLADK--YKGKLVFRF---DD-----------------TNPSK------------ 98 (601)
T ss_pred eEEeeCCCCCCcccHHHHHHHHHHHHHHHH--hCCEEEEEE---cC-----------------CCCcc------------
Confidence 677778999999999999999999999985 344333322 22 22211
Q ss_pred HHHHHHHHHHHHHHHhcccccCCC-ccccCChhhHHHHHHHHHHHHHcCcee
Q 003578 173 WKEKYGGTITSQIKRLGASCDWTR-ERFTLDEQLSRAVVEAFIRLHEKGLIY 223 (809)
Q Consensus 173 ~~~~~~~~~~~~l~~lgi~~Dw~~-~~~T~d~~~~~~v~~~f~~L~~~Gliy 223 (809)
...++.+.|.++|+.||+ +|+. .+++ .+|-..-.+...+|.++|++|
T Consensus 99 ~~~e~~d~IleDL~WLGl--~wDe~~~~Q--Sdr~d~y~e~a~~Li~~G~AY 146 (601)
T PTZ00402 99 EKEHFEQAILDDLATLGV--SWDVGPTYS--SDYMDLMYEKAEELIKKGLAY 146 (601)
T ss_pred cCHHHHHHHHHHHHHCCC--CCCCceeec--cccHHHHHHHHHHHHHcCCEE
Confidence 014678889999999997 5544 3443 456667788889999999998
No 94
>TIGR00440 glnS glutaminyl-tRNA synthetase. This protein is a relatively rare aminoacyl-tRNA synthetase, found in the cytosolic compartment of eukaryotes, in E. coli and a number of other Gram-negative Bacteria, and in Deinococcus radiodurans. In contrast, the pathway to Gln-tRNA in mitochondria, Archaea, Gram-positive Bacteria, and a number of other lineages is by misacylation with Glu followed by transamidation to correct the aminoacylation to Gln. This enzyme is a class I tRNA synthetase (hit by the pfam model tRNA-synt_1c) and is quite closely related to glutamyl-tRNA synthetases.
Probab=98.57 E-value=6.3e-06 Score=93.87 Aligned_cols=96 Identities=25% Similarity=0.372 Sum_probs=65.8
Q ss_pred EeCCCCCCCCCCcchhhHHHHHHHHHHHHHHHCCCcccccCCCCCCCCchHHHHHHHHHHcCCCccccCHHHHHHHHHHH
Q 003578 94 ISMPPPNVTGSLHMGHAMFVTLEDIMVRYHRMKGRPTLWLPGTDHAGIATQLVVEKMLAAEGIKRVELSRDEFTKRVWEW 173 (809)
Q Consensus 94 i~~~pPy~nG~lHiGH~~~~~~~Di~~Ry~rm~G~~V~~~~G~D~~Gl~~~~~~e~~~~~~g~~~~~~~~~~f~~~~~~~ 173 (809)
++=.||.|||.||||||++.++...+||- ..|.-++.+=-||- .. .
T Consensus 2 ~tRFaPsPtG~LHiG~ar~al~n~~~A~~--~~G~~iLRieDTd~--------------------~r------------~ 47 (522)
T TIGR00440 2 HTRFPPEPNGYLHIGHAKSICLNFGYAKY--YNGTCNLRFDDTNP--------------------VK------------E 47 (522)
T ss_pred eEecCCCCCCcccHHHHHHHHHHHHHHHH--hCCEEEEEEcCCCc--------------------cc------------C
Confidence 45568999999999999999999999983 34544433322222 10 0
Q ss_pred HHHHHHHHHHHHHHhcccccCCCccccCChhhHHHHHHHHHHHHHcCceeecC
Q 003578 174 KEKYGGTITSQIKRLGASCDWTRERFTLDEQLSRAVVEAFIRLHEKGLIYQGS 226 (809)
Q Consensus 174 ~~~~~~~~~~~l~~lgi~~Dw~~~~~T~d~~~~~~v~~~f~~L~~~Gliy~~~ 226 (809)
..++.+.|.++|+.||+..| ...+++ .+|-..-.+...+|.++|++|...
T Consensus 48 ~~e~~~~I~~dL~wLG~~~d-~~~~~q--S~~~~~~~~~a~~Li~~G~AY~c~ 97 (522)
T TIGR00440 48 DPEYVESIKRDVEWLGFKWE-GKIRYS--SDYFDELYRYAEELIKKGLAYVDE 97 (522)
T ss_pred ChHHHHHHHHHHHHcCCCCC-CCceEc--cccHHHHHHHHHHHHHcCCEEeec
Confidence 14677889999999997665 233333 334444456668999999999754
No 95
>cd00418 GlxRS_core catalytic core domain of glutamyl-tRNA and glutaminyl-tRNA synthetase. Glutamyl-tRNA synthetase(GluRS)/Glutaminyl-tRNA synthetase (GlnRS) cataytic core domain. These enzymes attach Glu or Gln, respectively, to the appropriate tRNA. Like other class I tRNA synthetases, they aminoacylate the 2'-OH of the nucleotide at the 3' end of the tRNA. The core domain is based on the Rossman fold and is responsible for the ATP-dependent formation of the enzyme bound aminoacyl-adenylate. It contains the characteristic class I HIGH and KMSKS motifs, which are involved in ATP binding. These enzymes function as monomers. Archaea, cellular organelles, and some bacteria lack GlnRS. In these cases, the "non-discriminating" form of GluRS aminoacylates both tRNA(Glu) and tRNA(Gln) with Glu, which is converted to Gln when appropriate by a transamidation enzyme. The discriminating form of GluRS differs from GlnRS and the non-discriminating form of GluRS in their C-terminal anti-codon bind
Probab=98.56 E-value=4.6e-06 Score=85.65 Aligned_cols=89 Identities=25% Similarity=0.257 Sum_probs=60.1
Q ss_pred EeCCCCCCCCCCcchhhHHHHHHHHHHHHHHHCCCcccccCCCCCCCCchHHHHHHHHHHcCCCccccCHHHHHHHHHHH
Q 003578 94 ISMPPPNVTGSLHMGHAMFVTLEDIMVRYHRMKGRPTLWLPGTDHAGIATQLVVEKMLAAEGIKRVELSRDEFTKRVWEW 173 (809)
Q Consensus 94 i~~~pPy~nG~lHiGH~~~~~~~Di~~Ry~rm~G~~V~~~~G~D~~Gl~~~~~~e~~~~~~g~~~~~~~~~~f~~~~~~~ 173 (809)
++=.+|.|||.||+||+++.++.-.+||-+ .|.=++.+=-+|. .. .
T Consensus 3 ~~RFAPsPtG~lHlG~~r~al~n~l~Ar~~--~G~~iLRieDtD~--------------------~R------------~ 48 (230)
T cd00418 3 VTRFAPSPTGYLHIGHARTALFNFAFARKY--GGKFILRIEDTDP--------------------ER------------S 48 (230)
T ss_pred eEEeCCCCCCcccHHHHHHHHHHHHHHHHc--CCeEEEEeCcCCC--------------------CC------------C
Confidence 344579999999999999999999998863 4443333333332 10 1
Q ss_pred HHHHHHHHHHHHHHhcccccCCC-ccccCChhhHHHHHHHHHHHHHcC
Q 003578 174 KEKYGGTITSQIKRLGASCDWTR-ERFTLDEQLSRAVVEAFIRLHEKG 220 (809)
Q Consensus 174 ~~~~~~~~~~~l~~lgi~~Dw~~-~~~T~d~~~~~~v~~~f~~L~~~G 220 (809)
..++.+.|.++|+.||+..| . +|+. .++.+.-+....+|.++|
T Consensus 49 ~~~~~~~I~~dL~wlGl~wd--~~~~~Q--S~r~~~y~~~~~~L~~~g 92 (230)
T cd00418 49 RPEYVESILEDLKWLGLDWD--EGPYRQ--SDRFDLYRAYAEELIKKG 92 (230)
T ss_pred ChHHHHHHHHHHHHcCCCCC--CCeeeh--hcCHHHHHHHHHHHHHcC
Confidence 14677889999999997555 4 4432 234444566778888888
No 96
>PLN02627 glutamyl-tRNA synthetase
Probab=98.43 E-value=2.2e-05 Score=89.48 Aligned_cols=96 Identities=24% Similarity=0.253 Sum_probs=66.4
Q ss_pred EEeCCCCCCCCCCcchhhHHHHHHHHHHHHHHHCCCcccccCCCCCCCCchHHHHHHHHHHcCCCccccCHHHHHHHHHH
Q 003578 93 VISMPPPNVTGSLHMGHAMFVTLEDIMVRYHRMKGRPTLWLPGTDHAGIATQLVVEKMLAAEGIKRVELSRDEFTKRVWE 172 (809)
Q Consensus 93 ~i~~~pPy~nG~lHiGH~~~~~~~Di~~Ry~rm~G~~V~~~~G~D~~Gl~~~~~~e~~~~~~g~~~~~~~~~~f~~~~~~ 172 (809)
+.+=..|.|||.|||||+++.++.-.+|| +..|.=++.+=-+|.. +
T Consensus 46 vr~RFAPSPTG~LHiG~aRtAL~n~l~Ar--~~gG~fiLRIEDTD~~------------------R-------------- 91 (535)
T PLN02627 46 VRVRFAPSPTGNLHVGGARTALFNYLFAR--SKGGKFVLRIEDTDLA------------------R-------------- 91 (535)
T ss_pred eEEEeCCCCCCCccHHHHHHHHHHHHHHH--HhCCEEEEEeCcCCCC------------------C--------------
Confidence 55556699999999999999999999998 4556555544444431 1
Q ss_pred HHHHHHHHHHHHHHHhcccccCC-------CccccCChhhHHHHHHHHHHHHHcCceee
Q 003578 173 WKEKYGGTITSQIKRLGASCDWT-------RERFTLDEQLSRAVVEAFIRLHEKGLIYQ 224 (809)
Q Consensus 173 ~~~~~~~~~~~~l~~lgi~~Dw~-------~~~~T~d~~~~~~v~~~f~~L~~~Gliy~ 224 (809)
.+.++.+.|.++|+.||+..|=. -+|+-+ +..+.-++...+|.++|.+|.
T Consensus 92 ~~~e~~~~I~~~L~WLGl~wDegp~~gg~~gpy~QS--eR~~~Y~~~a~~Li~~G~AY~ 148 (535)
T PLN02627 92 STKESEEAVLRDLKWLGLDWDEGPDVGGEYGPYRQS--ERNAIYKQYAEKLLESGHVYP 148 (535)
T ss_pred CChHHHHHHHHHHHHcCCCCCcCcccCCCCCCeeee--ccHHHHHHHHHHHHHcCCeee
Confidence 11457778999999999655511 023322 233455677889999999996
No 97
>KOG1195 consensus Arginyl-tRNA synthetase [Translation, ribosomal structure and biogenesis]
Probab=98.39 E-value=0.00055 Score=75.73 Aligned_cols=158 Identities=16% Similarity=0.210 Sum_probs=108.4
Q ss_pred hhHHHHHHHHHhcCCCCCCCCCCCCCEEEeCCCCCCCCCCcchhhHHHHHHHHHHHHHHHCCCccccc------------
Q 003578 66 TSEERIYNWWESQGYFKPNFERGSDPFVISMPPPNVTGSLHMGHAMFVTLEDIMVRYHRMKGRPTLWL------------ 133 (809)
Q Consensus 66 ~~E~~~~~~W~~~~~f~~~~~~~~~~f~i~~~pPy~nG~lHiGH~~~~~~~Di~~Ry~rm~G~~V~~~------------ 133 (809)
-++.-.+..|++.+.|....-...++.++....||.+-+.|+||.+..+++-.++.-++..|++|.-+
T Consensus 86 ~~k~~l~~i~~~~~~~g~~~~~~~k~iVVefSSPNIAK~FHvGhLRsTiiG~flanl~e~~G~~Vtr~NYLGDWGkQFgl 165 (567)
T KOG1195|consen 86 LIKSVLPIIEEQREKYGKNELGSGKKIVVEFSSPNIAKPFHVGHLRSTIIGNFLANLHEALGWEVTRVNYLGDWGKQFGL 165 (567)
T ss_pred HHHHHHHHHHHHhcccCccccccCceEEEEecCCCcccccccchhhhhhhhhHhhhhHHhhCCceeehhhhhHHHHHhhH
Confidence 45889999999999999875555788999999999999999999999999999999999999999874
Q ss_pred --CCCCCCCC-------chHHHHHHHH-----HHcCCCccccCHHHHHH-------HHHHH---HHHHHHHHHHHHHHhc
Q 003578 134 --PGTDHAGI-------ATQLVVEKML-----AAEGIKRVELSRDEFTK-------RVWEW---KEKYGGTITSQIKRLG 189 (809)
Q Consensus 134 --~G~D~~Gl-------~~~~~~e~~~-----~~~g~~~~~~~~~~f~~-------~~~~~---~~~~~~~~~~~l~~lg 189 (809)
.||-..|- ||+.-.+... .+...+..+..++-|.. ..+.| .+.-+....+..+|||
T Consensus 166 l~~g~~~~g~e~~L~~~pI~hL~dvYVk~nk~~~~~~~~~~~are~f~rlE~~d~e~~k~Wqrfr~lsIe~l~~~Y~Rl~ 245 (567)
T KOG1195|consen 166 LALGFQLYGDEEELQLNPIKHLFDVYVKINKDAEKDPDTAEEAREFFKRLEDGDEEHLKLWQRFRDLSIEKLIKTYNRLN 245 (567)
T ss_pred HhccHHhhCchhhhccchHHHHHHHHHHhhhhhhhCcchHHHHHHHHHHHhcccHHHHHHHHHhhhhhHHHHHHHHHHhc
Confidence 35555554 3332222111 11222222222322211 12233 3445566677889999
Q ss_pred cccc-CCCccccCChhhHHHHHHHHHHHHHcCceeecCc
Q 003578 190 ASCD-WTRERFTLDEQLSRAVVEAFIRLHEKGLIYQGSY 227 (809)
Q Consensus 190 i~~D-w~~~~~T~d~~~~~~v~~~f~~L~~~Gliy~~~~ 227 (809)
+.|| |+-+ +.-+.+..+.+...+.++||+....+
T Consensus 246 v~FD~y~gE----Sqv~~e~~~~~~d~~rs~~l~~e~dG 280 (567)
T KOG1195|consen 246 VKFDEYSGE----SQVSNEKMQEALDLLRSANLTEEIDG 280 (567)
T ss_pred eeeeeccch----HHHHHHHHHHHHHHHHhcCCcccCCC
Confidence 9999 6542 23567778888888888886554443
No 98
>cd09287 GluRS_non_core catalytic core domain of non-discriminating glutamyl-tRNA synthetase. Non-discriminating Glutamyl-tRNA synthetase (GluRS) cataytic core domain. These enzymes attach Glu to the appropriate tRNA. Like other class I tRNA synthetases, they aminoacylate the 2'-OH of the nucleotide at the 3' end of the tRNA. The core domain is based on the Rossman fold and is responsible for the ATP-dependent formation of the enzyme bound aminoacyl-adenylate. It contains the characteristic class I HIGH and KMSKS motifs, which are involved in ATP binding. These enzymes function as monomers. Archaea and most bacteria lack GlnRS. In these organisms, the "non-discriminating" form of GluRS aminoacylates both tRNA(Glu) and tRNA(Gln) with Glu, which is converted to Gln when appropriate by a transamidation enzyme.
Probab=98.31 E-value=1.6e-06 Score=89.44 Aligned_cols=94 Identities=21% Similarity=0.215 Sum_probs=67.4
Q ss_pred eCCCCCCCCCCcchhhHHHHHHHHHHHHHHHCCCcccccCCCCCCCCchHHHHHHHHHHcCCCccccCHHHHHHHHHHHH
Q 003578 95 SMPPPNVTGSLHMGHAMFVTLEDIMVRYHRMKGRPTLWLPGTDHAGIATQLVVEKMLAAEGIKRVELSRDEFTKRVWEWK 174 (809)
Q Consensus 95 ~~~pPy~nG~lHiGH~~~~~~~Di~~Ry~rm~G~~V~~~~G~D~~Gl~~~~~~e~~~~~~g~~~~~~~~~~f~~~~~~~~ 174 (809)
+=.+|.|||.|||||+++.++.++++| ++++.|+.-+|+.-.+. ++ ..
T Consensus 4 ~RfaPsPtG~lHiG~~rtal~~~l~Ar-----~~~G~~ilRieDtD~~r------------~~---------------~~ 51 (240)
T cd09287 4 MRFAPNPNGPLHLGHARAAILNGEYAK-----MYGGKFILRFDDTDPRT------------KR---------------PD 51 (240)
T ss_pred EeCCCCCCCCccHHHHHHHHHHHHHHH-----HcCCEEEEeeCcCCCCc------------cc---------------ch
Confidence 445699999999999999999999999 55666665555532210 00 11
Q ss_pred HHHHHHHHHHHHHhcccccCCCccccCChhhHHHHHHHHHHHHHcCceee
Q 003578 175 EKYGGTITSQIKRLGASCDWTRERFTLDEQLSRAVVEAFIRLHEKGLIYQ 224 (809)
Q Consensus 175 ~~~~~~~~~~l~~lgi~~Dw~~~~~T~d~~~~~~v~~~f~~L~~~Gliy~ 224 (809)
..+.+.|.++|+.||+ +|+..++ ..++.+.-+++..+|.++|++|.
T Consensus 52 ~~~~~~i~~dL~wLGl--~~d~~~~--qS~r~~~y~~~~~~Li~~G~aY~ 97 (240)
T cd09287 52 PEAYDMIPEDLEWLGV--KWDEVVI--ASDRIELYYEYARKLIEMGGAYV 97 (240)
T ss_pred HHHHHHHHHHHHHcCC--CCCCccc--hhccHHHHHHHHHHHHHcCCccc
Confidence 3455568999999998 5655443 33555666777899999999997
No 99
>KOG4426 consensus Arginyl-tRNA synthetase [Translation, ribosomal structure and biogenesis]
Probab=98.18 E-value=0.00023 Score=76.74 Aligned_cols=58 Identities=17% Similarity=0.334 Sum_probs=48.0
Q ss_pred CCCEEEeCCCCCCCCCCcchhhHHHHHHHHHHHHHHHCCCcccccCCCC----CCCCchHHH
Q 003578 89 SDPFVISMPPPNVTGSLHMGHAMFVTLEDIMVRYHRMKGRPTLWLPGTD----HAGIATQLV 146 (809)
Q Consensus 89 ~~~f~i~~~pPy~nG~lHiGH~~~~~~~Di~~Ry~rm~G~~V~~~~G~D----~~Gl~~~~~ 146 (809)
.|+.++....||.--.+|+||++..+++|.++|.....|++|+...-.- .+|+-|+.-
T Consensus 187 ~KrvlVDFSSPNIAKeMHVGHLRSTIIGdsl~RllE~~~~dVlR~NHvGDWGTQFGMLIahL 248 (656)
T KOG4426|consen 187 VKRVLVDFSSPNIAKEMHVGHLRSTIIGDSLCRLLEFSGVDVLRRNHVGDWGTQFGMLIAHL 248 (656)
T ss_pred eeeEEEecCCCcHHHHhhhhhhhhhhHhHHHHHHHHhcCcceEeeccccchHHHHHHHHHHH
Confidence 5788888888999999999999999999999999999999999874333 355544433
No 100
>TIGR03838 queuosine_YadB glutamyl-queuosine tRNA(Asp) synthetase. This protein resembles a shortened glutamyl-tRNA ligase, but its purpose is to modify tRNA(Asp) at a queuosine position in the anticodon rather than to charge a tRNA with its cognate amino acid.
Probab=97.79 E-value=7.4e-05 Score=78.96 Aligned_cols=94 Identities=21% Similarity=0.212 Sum_probs=66.8
Q ss_pred CCCCCCCCCCcchhhHHHHHHHHHHHHHHHCCCcccccCCCCCCCCchHHHHHHHHHHcCCCccccCHHHHHHHHHHHHH
Q 003578 96 MPPPNVTGSLHMGHAMFVTLEDIMVRYHRMKGRPTLWLPGTDHAGIATQLVVEKMLAAEGIKRVELSRDEFTKRVWEWKE 175 (809)
Q Consensus 96 ~~pPy~nG~lHiGH~~~~~~~Di~~Ry~rm~G~~V~~~~G~D~~Gl~~~~~~e~~~~~~g~~~~~~~~~~f~~~~~~~~~ 175 (809)
=.+|.|||.|||||+++.++...+|| +..|.=++.+=-+|.. + ...
T Consensus 4 RFAPSPtG~lHiG~~rtAL~n~l~Ar--~~gG~~iLRiEDtD~~------------------R--------------~~~ 49 (272)
T TIGR03838 4 RFAPSPSGPLHFGSLVAALGSYLDAR--AHGGRWLVRIEDLDPP------------------R--------------EVP 49 (272)
T ss_pred eeCCCCCCcccHHHHHHHHHHHHHHH--HhCCEEEEEeCcCCCC------------------C--------------CCh
Confidence 35699999999999999999999999 4466555554444431 0 013
Q ss_pred HHHHHHHHHHHHhcccccCCCccccCChhhHHHHHHHHHHHHHcCceeecC
Q 003578 176 KYGGTITSQIKRLGASCDWTRERFTLDEQLSRAVVEAFIRLHEKGLIYQGS 226 (809)
Q Consensus 176 ~~~~~~~~~l~~lgi~~Dw~~~~~T~d~~~~~~v~~~f~~L~~~Gliy~~~ 226 (809)
++.+.|.++|+.||+..| .-+|+. .++.+.-+....+|.++|++|...
T Consensus 50 ~~~~~I~~dL~wLGl~wD-e~~~~Q--S~r~~~Y~~~~~~L~~~G~aY~C~ 97 (272)
T TIGR03838 50 GAADDILRTLEAYGLHWD-GEVVYQ--SQRHALYQAALDRLLAAGLAYPCQ 97 (272)
T ss_pred HHHHHHHHHHHHcCCCCC-CCeeee--eCCHHHHHHHHHHHHHcCCEEecC
Confidence 566789999999997655 112332 244456677889999999999653
No 101
>cd00807 GlnRS_core catalytic core domain of glutaminyl-tRNA synthetase. Glutaminyl-tRNA synthetase (GlnRS) cataytic core domain. These enzymes attach Gln to the appropriate tRNA. Like other class I tRNA synthetases, they aminoacylate the 2'-OH of the nucleotide at the 3' end of the tRNA. The core domain is based on the Rossman fold and is responsible for the ATP-dependent formation of the enzyme bound aminoacyl-adenylate. GlnRS contains the characteristic class I HIGH and KMSKS motifs, which are involved in ATP binding. These enzymes function as monomers. Archaea and most bacteria lack GlnRS. In these organisms, the "non-discriminating" form of GluRS aminoacylates both tRNA(Glu) and tRNA(Gln) with Glu, which is converted to Gln when appropriate by a transamidation enzyme.
Probab=97.76 E-value=8.8e-05 Score=76.36 Aligned_cols=93 Identities=26% Similarity=0.345 Sum_probs=65.8
Q ss_pred EeCCCCCCCCCCcchhhHHHHHHHHHHHHHHHCCCcccccCCCCCCCCchHHHHHHHHHHcCCCccccCHHHHHHHHHHH
Q 003578 94 ISMPPPNVTGSLHMGHAMFVTLEDIMVRYHRMKGRPTLWLPGTDHAGIATQLVVEKMLAAEGIKRVELSRDEFTKRVWEW 173 (809)
Q Consensus 94 i~~~pPy~nG~lHiGH~~~~~~~Di~~Ry~rm~G~~V~~~~G~D~~Gl~~~~~~e~~~~~~g~~~~~~~~~~f~~~~~~~ 173 (809)
++=.+|.|||.||+||+++.++.-.+||- ..|.=++.+ |+ .++.. .
T Consensus 3 ~~RFAPsPtG~lHlG~~~~al~~~l~Ar~--~~G~~iLRi---eD-----------------tD~~R------------~ 48 (238)
T cd00807 3 VTRFPPEPNGYLHIGHAKAILLNFGYAKK--YGGRCNLRF---DD-----------------TNPEK------------E 48 (238)
T ss_pred eEecCCCCCCcccHHHHHHHHHHHHHHHH--hCCEEEEEe---cC-----------------CCCcc------------c
Confidence 45567999999999999999999999875 244333322 22 22211 1
Q ss_pred HHHHHHHHHHHHHHhcccccCCCccccCChhhHHHHHHHHHHHHHcCceee
Q 003578 174 KEKYGGTITSQIKRLGASCDWTRERFTLDEQLSRAVVEAFIRLHEKGLIYQ 224 (809)
Q Consensus 174 ~~~~~~~~~~~l~~lgi~~Dw~~~~~T~d~~~~~~v~~~f~~L~~~Gliy~ 224 (809)
...+.+.|.++|+.||+..| ..++ ..++.+.-++...+|.++|++|.
T Consensus 49 ~~~~~~~I~~dL~wlGl~wD--~~~~--QS~r~~~Y~~~~~~L~~~g~aY~ 95 (238)
T cd00807 49 EEEYVDSIKEDVKWLGIKPY--KVTY--ASDYFDQLYEYAEQLIKKGKAYV 95 (238)
T ss_pred chHHHHHHHHHHHHcCCCCC--Ccee--cccCHHHHHHHHHHHHHcCCeec
Confidence 24677889999999997666 4433 33455566788899999999999
No 102
>PF00749 tRNA-synt_1c: tRNA synthetases class I (E and Q), catalytic domain; InterPro: IPR020058 The aminoacyl-tRNA synthetases (6.1.1. from EC) catalyse the attachment of an amino acid to its cognate transfer RNA molecule in a highly specific two-step reaction. These proteins differ widely in size and oligomeric state, and have limited sequence homology []. The 20 aminoacyl-tRNA synthetases are divided into two classes, I and II. Class I aminoacyl-tRNA synthetases contain a characteristic Rossman fold catalytic domain and are mostly monomeric []. Class II aminoacyl-tRNA synthetases share an anti-parallel beta-sheet fold flanked by alpha-helices [], and are mostly dimeric or multimeric, containing at least three conserved regions [, , ]. However, tRNA binding involves an alpha-helical structure that is conserved between class I and class II synthetases. In reactions catalysed by the class I aminoacyl-tRNA synthetases, the aminoacyl group is coupled to the 2'-hydroxyl of the tRNA, while, in class II reactions, the 3'-hydroxyl site is preferred. The synthetases specific for arginine, cysteine, glutamic acid, glutamine, isoleucine, leucine, methionine, tyrosine, tryptophan and valine belong to class I synthetases. The synthetases specific for alanine, asparagine, aspartic acid, glycine, histidine, lysine, phenylalanine, proline, serine, and threonine belong to class-II synthetases []. Based on their mode of binding to the tRNA acceptor stem, both classes of tRNA synthetases have been subdivided into three subclasses, designated 1a, 1b, 1c and 2a, 2b, 2c. Glutamyl-tRNA synthetase (6.1.1.17 from EC) is a class Ic synthetase and shows several similarities with glutaminyl-tRNA synthetase concerning structure and catalytic properties. It is an alpha2 dimer. To date one crystal structure of a glutamyl-tRNA synthetase (Thermus thermophilus) has been solved. The molecule has the form of a bent cylinder and consists of four domains. The N-terminal half (domains 1 and 2) contains the 'Rossman fold' typical for class I synthetases and resembles the corresponding part of Escherichia coli GlnRS, whereas the C-terminal half exhibits a GluRS-specific structure []. ; GO: 0000166 nucleotide binding, 0005524 ATP binding, 0016876 ligase activity, forming aminoacyl-tRNA and related compounds, 0043039 tRNA aminoacylation, 0005737 cytoplasm; PDB: 2HZ7_A 2CFO_A 4A91_A 1NZJ_A 1N78_A 1G59_C 2CV2_A 2CV1_A 2CV0_B 1GLN_A ....
Probab=97.74 E-value=6.6e-05 Score=81.62 Aligned_cols=95 Identities=26% Similarity=0.390 Sum_probs=61.3
Q ss_pred EeCCCCCCCCCCcchhhHHHHHHHHHHHHHHHCCCcccccCCCCCCCCchHHHHHHHHHHcCCCccccCHHHHHHHHHHH
Q 003578 94 ISMPPPNVTGSLHMGHAMFVTLEDIMVRYHRMKGRPTLWLPGTDHAGIATQLVVEKMLAAEGIKRVELSRDEFTKRVWEW 173 (809)
Q Consensus 94 i~~~pPy~nG~lHiGH~~~~~~~Di~~Ry~rm~G~~V~~~~G~D~~Gl~~~~~~e~~~~~~g~~~~~~~~~~f~~~~~~~ 173 (809)
.+=.+|.|||.|||||+++.++.-.+|| +..|.=++.+=-+|.. +.
T Consensus 3 ~tRFAPsPtG~lHiG~~r~al~n~~~Ar--~~~G~~iLRieDtD~~------------------R~-------------- 48 (314)
T PF00749_consen 3 RTRFAPSPTGYLHIGHARTALLNYLFAR--KYGGKFILRIEDTDPE------------------RC-------------- 48 (314)
T ss_dssp EEEE---SSSS-BHHHHHHHHHHHHHHH--HTTSEEEEEEETSSTT------------------TC--------------
T ss_pred eEeeCCCCCCCcccchhHHHHHHHHHHh--ccCceEEEeccccccc------------------cc--------------
Confidence 3445699999999999999999999988 4455444443333321 11
Q ss_pred HHHHHHHHHHHHHHhcccccCCCccccCChhhHHHHHHHHHHHHHcCceeec
Q 003578 174 KEKYGGTITSQIKRLGASCDWTRERFTLDEQLSRAVVEAFIRLHEKGLIYQG 225 (809)
Q Consensus 174 ~~~~~~~~~~~l~~lgi~~Dw~~~~~T~d~~~~~~v~~~f~~L~~~Gliy~~ 225 (809)
..++.+.|.++|+.||+..|. .+|+ ..++.+.-+.+..+|.++|++|..
T Consensus 49 ~~~~~~~i~~~L~wlGl~~D~-~~~~--QS~r~~~Y~~~~~~L~~~g~aY~C 97 (314)
T PF00749_consen 49 RPEFYDAILEDLRWLGLEWDY-GPYY--QSDRLEIYQEAAEKLIDKGKAYPC 97 (314)
T ss_dssp HHHHHHHHHHHHHHHT---ST-CEEE--GGGGHHHHHHHHHHHHHTTSEEEE
T ss_pred hhhHHHHHHhheeEEEEecCC-eEEe--HHHHHHHHHHHHHHHhhcCCCccc
Confidence 245677899999999977772 3333 345555667888899999999864
No 103
>COG0008 GlnS Glutamyl- and glutaminyl-tRNA synthetases [Translation, ribosomal structure and biogenesis]
Probab=97.58 E-value=9.5e-05 Score=83.75 Aligned_cols=96 Identities=27% Similarity=0.334 Sum_probs=68.1
Q ss_pred EEeCCCCCCCCCCcchhhHHHHHHHHHHHHHHHCCCcccccCCCCCCCCchHHHHHHHHHHcCCCccccCHHHHHHHHHH
Q 003578 93 VISMPPPNVTGSLHMGHAMFVTLEDIMVRYHRMKGRPTLWLPGTDHAGIATQLVVEKMLAAEGIKRVELSRDEFTKRVWE 172 (809)
Q Consensus 93 ~i~~~pPy~nG~lHiGH~~~~~~~Di~~Ry~rm~G~~V~~~~G~D~~Gl~~~~~~e~~~~~~g~~~~~~~~~~f~~~~~~ 172 (809)
+++=.+|.|||.||||||++.++...+||- ..|.-++.+=-|| +..-
T Consensus 10 v~tRFAPsPtG~LHiG~artAl~N~~~Ar~--~~G~fiLRiEDTD--------------------~~R~----------- 56 (472)
T COG0008 10 VRTRFAPSPTGYLHIGHARTALLNYLYARK--YGGKFILRIEDTD--------------------PERE----------- 56 (472)
T ss_pred eEEEECcCCCCccchHHHHHHHHHHHHHHH--hCCEEEEEecCCC--------------------CCCC-----------
Confidence 677778999999999999999999999986 3344333332222 2111
Q ss_pred HHHHHHHHHHHHHHHhcccccCCC-ccccCChhhHHHHHHHHHHHHHcCceeecC
Q 003578 173 WKEKYGGTITSQIKRLGASCDWTR-ERFTLDEQLSRAVVEAFIRLHEKGLIYQGS 226 (809)
Q Consensus 173 ~~~~~~~~~~~~l~~lgi~~Dw~~-~~~T~d~~~~~~v~~~f~~L~~~Gliy~~~ 226 (809)
..++.+.|.++|+.||+ +|+. .|. ..++-..-+..-.+|.++|++|...
T Consensus 57 -~~e~~~~I~~~L~WLGl--~wde~~~~--QS~r~~~Y~~~~~~Li~~G~AY~c~ 106 (472)
T COG0008 57 -TPEAEDAILEDLEWLGL--DWDEGPYY--QSERFDIYYEYAEKLIEKGKAYVCY 106 (472)
T ss_pred -CHHHHHHHHHHHHhcCC--CCCCceee--hhhhHHHHHHHHHHHHHCCCeEEec
Confidence 14677889999999995 5555 333 3355556677888999999998754
No 104
>PLN02859 glutamine-tRNA ligase
Probab=97.57 E-value=0.00028 Score=83.46 Aligned_cols=96 Identities=22% Similarity=0.286 Sum_probs=65.9
Q ss_pred EEeCCCCCCCCCCcchhhHHHHHHHHHHHHHHHCCCcccccCCCCCCCCchHHHHHHHHHHcCCCccccCHHHHHHHHHH
Q 003578 93 VISMPPPNVTGSLHMGHAMFVTLEDIMVRYHRMKGRPTLWLPGTDHAGIATQLVVEKMLAAEGIKRVELSRDEFTKRVWE 172 (809)
Q Consensus 93 ~i~~~pPy~nG~lHiGH~~~~~~~Di~~Ry~rm~G~~V~~~~G~D~~Gl~~~~~~e~~~~~~g~~~~~~~~~~f~~~~~~ 172 (809)
+.+=.||.|||.||||||++.++...+||.+ .|.-.+.+=-+| |..
T Consensus 265 V~tRFaPsPtG~LHiGharaallN~~~Ar~~--~G~~~LRieDTd--------------------p~r------------ 310 (788)
T PLN02859 265 VYTRFPPEPNGYLHIGHAKAMFVDFGLAKER--GGCCYLRFDDTN--------------------PEA------------ 310 (788)
T ss_pred eEEEeCCCCCCcccHHHHHHHHHHHHHHHHh--CCEEEEEecCCC--------------------CCc------------
Confidence 5677789999999999999999999999873 453333322222 211
Q ss_pred HHHHHHHHHHHHHHHhcccccCCCccccCChhhHHHHHHHHHHHHHcCceeecC
Q 003578 173 WKEKYGGTITSQIKRLGASCDWTRERFTLDEQLSRAVVEAFIRLHEKGLIYQGS 226 (809)
Q Consensus 173 ~~~~~~~~~~~~l~~lgi~~Dw~~~~~T~d~~~~~~v~~~f~~L~~~Gliy~~~ 226 (809)
...++.+.|.++|+.|| ++|+..++++ +|-+...+.-.+|.++|++|...
T Consensus 311 ~~~e~~~~I~edL~WLG--~~~d~~~~qS--d~f~~~Y~~A~~Li~~G~AY~C~ 360 (788)
T PLN02859 311 EKKEYIDHIEEIVEWMG--WEPFKITYTS--DYFQELYELAVELIRRGHAYVDH 360 (788)
T ss_pred cchHHHHHHHHHHHHcC--CCCCCccccc--HhHHHHHHHHHHHHHcCCeEecc
Confidence 12467888999999999 5566655543 33323334556799999999754
No 105
>PRK05710 glutamyl-Q tRNA(Asp) synthetase; Reviewed
Probab=97.35 E-value=0.00064 Score=72.76 Aligned_cols=96 Identities=26% Similarity=0.284 Sum_probs=65.3
Q ss_pred EEeCCCCCCCCCCcchhhHHHHHHHHHHHHHHHCCCcccccCCCCCCCCchHHHHHHHHHHcCCCccccCHHHHHHHHHH
Q 003578 93 VISMPPPNVTGSLHMGHAMFVTLEDIMVRYHRMKGRPTLWLPGTDHAGIATQLVVEKMLAAEGIKRVELSRDEFTKRVWE 172 (809)
Q Consensus 93 ~i~~~pPy~nG~lHiGH~~~~~~~Di~~Ry~rm~G~~V~~~~G~D~~Gl~~~~~~e~~~~~~g~~~~~~~~~~f~~~~~~ 172 (809)
+++=..|.|||.|||||+++.++.-.+||-. .|.=++.+=-+|. ++
T Consensus 6 v~~RFAPSPTG~LHlG~~rtAL~n~l~Ar~~--~G~~iLRiEDtD~------------------~R-------------- 51 (299)
T PRK05710 6 YIGRFAPSPSGPLHFGSLVAALGSWLDARAH--GGRWLLRIEDIDP------------------PR-------------- 51 (299)
T ss_pred eeEEeCcCCCCcccHHHHHHHHHHHHHHHHc--CCEEEEEECcCCC------------------Cc--------------
Confidence 4455569999999999999999999888753 3433333322222 01
Q ss_pred HHHHHHHHHHHHHHHhcccccCCCccccCChhhHHHHHHHHHHHHHcCceeec
Q 003578 173 WKEKYGGTITSQIKRLGASCDWTRERFTLDEQLSRAVVEAFIRLHEKGLIYQG 225 (809)
Q Consensus 173 ~~~~~~~~~~~~l~~lgi~~Dw~~~~~T~d~~~~~~v~~~f~~L~~~Gliy~~ 225 (809)
...++.+.|.++|+.||+..| ..+|+.+ ++...-+++..+|.++|++|..
T Consensus 52 ~~~~~~~~I~~dL~wlGl~wD-e~~~~QS--~r~~~Y~~~~~~L~~~G~aY~C 101 (299)
T PRK05710 52 EVPGAADAILADLEWLGLHWD-GPVLYQS--QRHDAYRAALDRLRAQGLVYPC 101 (299)
T ss_pred cchHHHHHHHHHHHHCCCCCC-CCceEee--ccHHHHHHHHHHHHHCCCceec
Confidence 113567789999999996554 1344432 3455667888999999999864
No 106
>cd00808 GluRS_core catalytic core domain of discriminating glutamyl-tRNA synthetase. Discriminating Glutamyl-tRNA synthetase (GluRS) catalytic core domain . The discriminating form of GluRS is only found in bacteria and cellular organelles. GluRS is a monomer that attaches Glu to the appropriate tRNA. Like other class I tRNA synthetases, GluRS aminoacylates the 2'-OH of the nucleotide at the 3' end of the tRNA. The core domain is based on the Rossman fold and is responsible for the ATP-dependent formation of the enzyme bound aminoacyl-adenylate. It contains the characteristic class I HIGH and KMSKS motifs, which are involved in ATP binding.
Probab=97.30 E-value=0.00091 Score=69.42 Aligned_cols=89 Identities=26% Similarity=0.300 Sum_probs=59.3
Q ss_pred EeCCCCCCCCCCcchhhHHHHHHHHHHHHHHHCCCcccccCCCCCCCCchHHHHHHHHHHcCCCccccCHHHHHHHHHHH
Q 003578 94 ISMPPPNVTGSLHMGHAMFVTLEDIMVRYHRMKGRPTLWLPGTDHAGIATQLVVEKMLAAEGIKRVELSRDEFTKRVWEW 173 (809)
Q Consensus 94 i~~~pPy~nG~lHiGH~~~~~~~Di~~Ry~rm~G~~V~~~~G~D~~Gl~~~~~~e~~~~~~g~~~~~~~~~~f~~~~~~~ 173 (809)
++=.+|.|||.|||||+++.++.-.+||- ..|.=.+.+=-+|. + +.
T Consensus 3 ~~RfAPsPtG~LHlG~~~~al~n~l~ar~--~~G~~ilRieDtd~---~---------------r~-------------- 48 (239)
T cd00808 3 RTRFAPSPTGFLHIGGARTALFNYLFARK--HGGKFILRIEDTDQ---E---------------RS-------------- 48 (239)
T ss_pred eEEeCCCCCCcccHHHHHHHHHHHHHHHH--cCCeEEEEECcCCC---C---------------CC--------------
Confidence 34456999999999999999999988884 34533332323332 0 00
Q ss_pred HHHHHHHHHHHHHHhcccccCCC---------ccccCChhhHHHHHHHHHHHHHcC
Q 003578 174 KEKYGGTITSQIKRLGASCDWTR---------ERFTLDEQLSRAVVEAFIRLHEKG 220 (809)
Q Consensus 174 ~~~~~~~~~~~l~~lgi~~Dw~~---------~~~T~d~~~~~~v~~~f~~L~~~G 220 (809)
..++.+.|.++|..||+ ||+. .|..++ ....-..+..+|.++|
T Consensus 49 ~~~~~~~i~~dL~wlGl--~~d~~~~~~g~~~~~~QS~--r~~~y~~~~~~L~~~g 100 (239)
T cd00808 49 VPEAEEAILEALKWLGL--DWDEGPDVGGPYGPYRQSE--RLEIYRKYAEKLLEKG 100 (239)
T ss_pred chHHHHHHHHHHHHcCC--CCCcCCccCCCCCCEeeeC--CHHHHHHHHHHHHHcC
Confidence 13567788999999996 4544 455443 4445566788888888
No 107
>cd07956 Anticodon_Ia_Arg Anticodon-binding domain of arginyl tRNA synthetases. This domain is found in arginyl tRNA synthetases (ArgRS), which belong to the class Ia aminoacyl tRNA synthetases. It lies C-terminal to the catalytic core domain, and recognizes and specifically binds to the tRNA anticodon. ArgRS catalyzes the transfer of arginine to the 3'-end of its tRNA.
Probab=96.89 E-value=0.019 Score=55.95 Aligned_cols=136 Identities=15% Similarity=0.145 Sum_probs=85.2
Q ss_pred hhCCchHHHHHhhCCCCCcccccHHHHHHH--------HHHHHHHHHHHHHHHHhCCCCCchhhHHHHhhhccchhhhhc
Q 003578 603 EFGADALRFTISLGTAGQDLSLSIERLTAN--------KAFTNKLWNAGKFILQNLPSQNDISRWEILLAYKFDEEECLC 674 (809)
Q Consensus 603 ~ygaD~lR~~ll~~~~~~d~~fs~~~l~~~--------~~~~~kl~N~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~ 674 (809)
+.|.|++||++++..+.++++|+++.+... .....|+.|+++-... .... . ...+..
T Consensus 2 ~i~~~a~~~~~l~~~~~~~~~fd~~~~~~~~~~~~~yi~ya~aRi~nIl~k~~~---~~~~-~-----------~~~~~~ 66 (156)
T cd07956 2 EVGVGAVKYQDLSNKRIKDYTFDWERMLSFEGDTGPYLQYAHARLCSILRKAGE---TIEA-E-----------ADADLS 66 (156)
T ss_pred ccchhHHHHHHHhcCCCCCceecHHHHHhhcCCCchhHHHHHHHHHHHHHhCCC---cCcc-c-----------cccchh
Confidence 468899999999999999999999996642 1233444444432210 0000 0 000111
Q ss_pred CC-CchhHHHHHHHHHHHHHHHHHhhcCChHHHHHHHHHHHHHhhHHHHHHHhhhhhhcCCCcH---HHHHHHHHHHHHH
Q 003578 675 KA-PLPECWVVSKLHMLIDTVTASYDKYFFGDVGRETYDFFWSDFADWYIEASKARLYRSEYDS---DAIIAQAVLLYIF 750 (809)
Q Consensus 675 ~l-~~~d~~il~~l~~~~~~v~~a~e~~~f~~a~~~i~~f~~~~~~n~Yi~~~k~~l~~~~~~~---~~~~~~~~l~~vl 750 (809)
.+ .+.++.++..+..+.+.+.+++.+.+++.++..+.++. ..+.++| +. .++..+ +.+ .|......+..++
T Consensus 67 ll~~~~E~~L~~~l~~~~~~i~~~~~~~~~~~l~~~l~~L~-~~~~~ff-d~--v~V~~~-~~~i~~nRL~Ll~~v~~vl 141 (156)
T cd07956 67 LLPEPDERDLILLLAKFPEVVKNAAETLEPHTIATYLFDLA-HAFSKFY-NA--CPVLGA-EEELRNARLALVAAARQVL 141 (156)
T ss_pred hcCCHHHHHHHHHHHHhHHHHHHHHHHcCcHHHHHHHHHHH-HHHHHHH-hc--CcccCC-CHHHHHHHHHHHHHHHHHH
Confidence 11 23567788889999999999999999999999999987 4555555 32 244433 322 3334445555666
Q ss_pred HHHHHHhc
Q 003578 751 ENILKLLH 758 (809)
Q Consensus 751 ~~l~~lL~ 758 (809)
...+.+|.
T Consensus 142 ~~~l~llg 149 (156)
T cd07956 142 ANGLDLLG 149 (156)
T ss_pred HHHHHhcC
Confidence 66666664
No 108
>KOG1147 consensus Glutamyl-tRNA synthetase [Translation, ribosomal structure and biogenesis]
Probab=96.86 E-value=0.003 Score=70.27 Aligned_cols=99 Identities=23% Similarity=0.345 Sum_probs=71.4
Q ss_pred EEeCCCCCCCCCCcchhhHHHHHHHHHHHHHHHCCCcccccCCCCCCCCchHHHHHHHHHHcCCCccccCHHHHHHHHHH
Q 003578 93 VISMPPPNVTGSLHMGHAMFVTLEDIMVRYHRMKGRPTLWLPGTDHAGIATQLVVEKMLAAEGIKRVELSRDEFTKRVWE 172 (809)
Q Consensus 93 ~i~~~pPy~nG~lHiGH~~~~~~~Di~~Ry~rm~G~~V~~~~G~D~~Gl~~~~~~e~~~~~~g~~~~~~~~~~f~~~~~~ 172 (809)
+++-.||-|||.||||||...++- -|...++ +=-.++-+|+.--+ .
T Consensus 201 Vv~RFPPEpSGyLHIGHAKAALLN----qYfa~~~-~G~LIvRFDDTNPa-----------------K------------ 246 (712)
T KOG1147|consen 201 VVTRFPPEPSGYLHIGHAKAALLN----QYFAQAY-QGKLIVRFDDTNPA-----------------K------------ 246 (712)
T ss_pred eEEecCCCCCceeehhhHHHHHHH----HHHHHhc-CceEEEEecCCCcc-----------------h------------
Confidence 566677999999999999887653 3333222 22334455554221 0
Q ss_pred HHHHHHHHHHHHHHHhcccccCCCccccCChhhHHHHHHHHHHHHHcCceeecCccc
Q 003578 173 WKEKYGGTITSQIKRLGASCDWTRERFTLDEQLSRAVVEAFIRLHEKGLIYQGSYMV 229 (809)
Q Consensus 173 ~~~~~~~~~~~~l~~lgi~~Dw~~~~~T~d~~~~~~v~~~f~~L~~~Gliy~~~~~v 229 (809)
-.+++.+.|.+++..|||..| .+|...+|-..+...-.+|.+.|.+|-...++
T Consensus 247 E~~eFe~~IleDl~~LgIkpd----~~TyTSDyF~~i~dycv~likeGKAYvDDTp~ 299 (712)
T KOG1147|consen 247 ENEEFEDVILEDLSLLGIKPD----RVTYTSDYFDEIMDYCVKLIKEGKAYVDDTPT 299 (712)
T ss_pred hhHHHHHHHHHHHHHhCcCcc----eeeechhhHHHHHHHHHHHHhcCcccccCCcH
Confidence 024677889999999999999 34667788888999999999999999887664
No 109
>KOG1148 consensus Glutaminyl-tRNA synthetase [Translation, ribosomal structure and biogenesis]
Probab=96.16 E-value=0.0073 Score=67.95 Aligned_cols=97 Identities=24% Similarity=0.306 Sum_probs=59.9
Q ss_pred EEEeCCCCCCCCCCcchhhHHHHHHHHHHHHHHHCCCcccccCCCCCCCCchHHHHHHHHHHcCCCccccCHHHHHHHHH
Q 003578 92 FVISMPPPNVTGSLHMGHAMFVTLEDIMVRYHRMKGRPTLWLPGTDHAGIATQLVVEKMLAAEGIKRVELSRDEFTKRVW 171 (809)
Q Consensus 92 f~i~~~pPy~nG~lHiGH~~~~~~~Di~~Ry~rm~G~~V~~~~G~D~~Gl~~~~~~e~~~~~~g~~~~~~~~~~f~~~~~ 171 (809)
=+.|-.||-|||.|||||+-..-+-==+|++ +.|.- |+ -+|+. .|+.
T Consensus 248 kV~TRFPPEPNG~LHIGHaKAInvNFgyAk~--~~G~c--yL-RfDDT-----------------NPEk----------- 294 (764)
T KOG1148|consen 248 KVVTRFPPEPNGILHIGHAKAINVNFGYAKA--HGGVC--YL-RFDDT-----------------NPEK----------- 294 (764)
T ss_pred eeEEeCCCCCCceeeecchhheeechhhhhh--hCCeE--EE-ecCCC-----------------Ccch-----------
Confidence 3677888999999999999653221112222 11111 00 11221 1221
Q ss_pred HHHHHHHHHHHHHHHHhcccccCCCccccCChhhHHHHHHHHHHHHHcCceeecC
Q 003578 172 EWKEKYGGTITSQIKRLGASCDWTRERFTLDEQLSRAVVEAFIRLHEKGLIYQGS 226 (809)
Q Consensus 172 ~~~~~~~~~~~~~l~~lgi~~Dw~~~~~T~d~~~~~~v~~~f~~L~~~Gliy~~~ 226 (809)
-.++|...|++....|| ++ -...|.+.+|-....+.-.+|.++|++|-..
T Consensus 295 -Eee~yf~sI~e~V~WLG--~~--P~kvTysSDyFdqLy~~av~LIrkG~AYVcH 344 (764)
T KOG1148|consen 295 -EEEEYFESIKEMVAWLG--FE--PYKVTYSSDYFDQLYELAVELIRKGKAYVCH 344 (764)
T ss_pred -hhHHHHHHHHHHHHHhC--CC--ceeeecchhHHHHHHHHHHHHHhcCceeEEe
Confidence 12577888999999999 33 2234888888777777778899999998643
No 110
>PRK13354 tyrosyl-tRNA synthetase; Provisional
Probab=95.12 E-value=0.021 Score=64.43 Aligned_cols=60 Identities=17% Similarity=0.075 Sum_probs=40.3
Q ss_pred CCCcEEEeeehhHHhHHHHHHHHHHHhcCCCCceeEEEeeeEEccCCCcccccccCccChhhH
Q 003578 538 YPTTMLETGHDILFFWVARMVMMGIEFTGSVPFSHVYLHGLIRDSQGRKMSKTLGNVIDPIDT 600 (809)
Q Consensus 538 ~p~d~~~~G~Di~~~w~~~~~~~~~~l~~~~Pf~~v~~hg~vld~~G~KMSKS~GN~I~p~dl 600 (809)
+.+|+.+.|.||......- .-+...+.+..| ..+.+..+.+.+|.|||||.||.|++.|-
T Consensus 185 ~~~~iq~gG~DQ~~ni~~g-rdl~~r~~~~~~--~~lt~PlL~g~dG~KMsKS~~naI~L~d~ 244 (410)
T PRK13354 185 EDVDLQIGGTDQWGNILMG-RDLQRKLEGEEQ--FGLTMPLLEGADGTKMGKSAGGAIWLDPE 244 (410)
T ss_pred CCCCEEEecHHHHHHHHHH-HHHHHHhCCCCc--eEeccCCccCCCCCccCCCCCCceeccCC
Confidence 4789999999997543221 112222333434 34456677789999999999999997764
No 111
>cd00802 class_I_aaRS_core catalytic core domain of class I amino acyl-tRNA synthetase. Class I amino acyl-tRNA synthetase (aaRS) catalytic core domain. These enzymes are mostly monomers which aminoacylate the 2'-OH of the nucleotide at the 3' of the appropriate tRNA. The core domain is based on the Rossman fold and is responsible for the ATP-dependent formation of the enzyme bound aminoacyl-adenylate. It contains the characteristic class I HIGH and KMSKS motifs, which are involved in ATP binding.
Probab=94.84 E-value=0.047 Score=52.28 Aligned_cols=50 Identities=20% Similarity=0.156 Sum_probs=34.4
Q ss_pred CcEEEeeehhHHhHHHHHHHHHHHhcCCCCceeEEEeeeEEccCCCcccccc
Q 003578 540 TTMLETGHDILFFWVARMVMMGIEFTGSVPFSHVYLHGLIRDSQGRKMSKTL 591 (809)
Q Consensus 540 ~d~~~~G~Di~~~w~~~~~~~~~~l~~~~Pf~~v~~hg~vld~~G~KMSKS~ 591 (809)
.++++.|.|+.. ++.....+...+.+..+ ...+.+|++...+|+|||||+
T Consensus 94 ~~i~~~G~Dq~~-h~~~~~~i~~~~~~~~~-p~~~~~~~l~~~~g~KmSks~ 143 (143)
T cd00802 94 CDIHLGGSDQLG-HIELGLELLKKAGGPAR-PFGLTFGRVMGADGTKMSKSK 143 (143)
T ss_pred cEEEEechhHHH-HHHHHHHHHHHhCCCCC-ceEEEeCCeECCCCCcCCCCC
Confidence 589999999876 44444444444434333 355677888877889999995
No 112
>PLN02563 aminoacyl-tRNA ligase
Probab=94.81 E-value=0.063 Score=66.78 Aligned_cols=78 Identities=22% Similarity=0.462 Sum_probs=64.4
Q ss_pred HHHHHHHHHHHHHCCCeeeeecc--------------cccCcccccCCCeeEEeeccceeeeccHHHHHHHHHHhcCCce
Q 003578 371 FEARKKLWSDLEETGLAVKKEPH--------------TLRVPRSQRGGEVIEPLVSKQWFVTMEPLAEKALHAVEKGELT 436 (809)
Q Consensus 371 ~~a~~~i~~~L~~~g~~~~~~~~--------------~~~~p~c~r~~~~i~~~~~~qwfl~~~~~~~~~~~~~~~~~~~ 436 (809)
.+.-..++..|-++|++...+.. +..+++|+|||.+++.+..+||||+++++++++++.++. +.
T Consensus 211 ~~~~q~~F~~L~~~GliY~~~~~v~wcp~~~T~La~~Ev~~~~~~~~~~~~~~~~~~q~f~~it~ya~~L~~~l~~--~~ 288 (963)
T PLN02563 211 YKWTQWIFLQLLKRGLAYQAEVPVNWCPALGTVLANEEVVDGLSERGGHPVIRKPMRQWMLKITAYADRLLEDLDD--LD 288 (963)
T ss_pred HHHHHHHHHHHHHCCCEEeeeeeeeecCCcCCCCCHHHhhcCCCcCCCCceEEEecceeEEecchhHHHHHHhhhh--cC
Confidence 35567788889999998765432 233466899999999999999999999999999999974 34
Q ss_pred EecchhHHHHHHHHh
Q 003578 437 IMPERFEKIYNHWLS 451 (809)
Q Consensus 437 ~~P~~~~~~~~~~l~ 451 (809)
+|+..++...+||-
T Consensus 289 -wp~~v~~~q~nwiG 302 (963)
T PLN02563 289 -WPESIKEMQRNWIG 302 (963)
T ss_pred -CCHHHHHHHHHhcc
Confidence 69999999999984
No 113
>PRK05912 tyrosyl-tRNA synthetase; Validated
Probab=94.67 E-value=0.031 Score=63.07 Aligned_cols=72 Identities=18% Similarity=0.149 Sum_probs=45.1
Q ss_pred CCCcEEEeeehhHHhHH-HHHHHHHHHhcCCCCceeEEEeeeEEccCCCcccccccCccChhhHHHhhCCchHHHHHhh
Q 003578 538 YPTTMLETGHDILFFWV-ARMVMMGIEFTGSVPFSHVYLHGLIRDSQGRKMSKTLGNVIDPIDTIKEFGADALRFTISL 615 (809)
Q Consensus 538 ~p~d~~~~G~Di~~~w~-~~~~~~~~~l~~~~Pf~~v~~hg~vld~~G~KMSKS~GN~I~p~dli~~ygaD~lR~~ll~ 615 (809)
+.+|+.+.|.||..... .+-++- .+..+.+| .+...++.+.+|+|||||.||.|++.|- ..+++.++=++.+
T Consensus 187 ~~~~i~~gG~DQ~~ni~~grdla~--r~~~~~~~--~l~~plL~~~~G~KMsKS~~naI~L~d~--~tsp~~i~qki~~ 259 (408)
T PRK05912 187 YGCDLQLGGSDQWGNILSGRDLQR--RYGGKPQF--GLTMPLLTGLDGKKMGKSEGNAVWLDEE--KTSPYEMYQKWMN 259 (408)
T ss_pred CCCCEEeccHHHHHHHHHHHHHHH--HhCCCCeE--EEecCCcCCCCCCcccCCCCCceeCCCC--CCCHHHHHHHHhc
Confidence 57999999999985432 222222 22333232 2355566688999999999999998761 2334445544444
No 114
>cd00395 Tyr_Trp_RS_core catalytic core domain of tyrosinyl-tRNA and tryptophanyl-tRNA synthetase. Tyrosinyl-tRNA synthetase (TyrRS)/Tryptophanyl-tRNA synthetase (TrpRS) catalytic core domain. These enzymes attach Tyr or Trp, respectively, to the appropriate tRNA. These class I enzymes are homodimers, which aminoacylate the 2'-OH of the nucleotide at the 3' of the appropriate tRNA. The core domain is based on the Rossman fold and is responsible for the ATP-dependent formation of the enzyme bound aminoacyl-adenylate. It contains the class I characteristic HIGH and KMSKS motifs, which are involved in ATP binding.
Probab=94.29 E-value=0.092 Score=56.07 Aligned_cols=56 Identities=16% Similarity=0.086 Sum_probs=37.3
Q ss_pred CCCcEEEeeehhHHh-HHHHHHHHHHHhcC-CCCceeEEEeeeEEccCCCcccccccCccCh
Q 003578 538 YPTTMLETGHDILFF-WVARMVMMGIEFTG-SVPFSHVYLHGLIRDSQGRKMSKTLGNVIDP 597 (809)
Q Consensus 538 ~p~d~~~~G~Di~~~-w~~~~~~~~~~l~~-~~Pf~~v~~hg~vld~~G~KMSKS~GN~I~p 597 (809)
+.+++...|.||... =.++-++.- +.+ ..| ..+++.++...+|.|||||.||.++.
T Consensus 152 ~~~~~vp~G~DQ~~~i~l~rdla~r--~n~~~~p--~~l~~p~l~~l~G~KMSKS~~~~i~l 209 (273)
T cd00395 152 EGCDIQPGGSDQWGNITLGRELARR--FNGFTIA--EGLTIPLVTKLDGPKFGKSESGPKWL 209 (273)
T ss_pred cCCcEEEecHHHHHHHHHHHHHHHH--hCCCCCC--eEEeeccccCCCCCcCCCCCCCCccc
Confidence 457899999999743 222323322 222 234 33455788899999999999999864
No 115
>PF00579 tRNA-synt_1b: tRNA synthetases class I (W and Y); InterPro: IPR002305 The aminoacyl-tRNA synthetases (6.1.1. from EC) catalyse the attachment of an amino acid to its cognate transfer RNA molecule in a highly specific two-step reaction. These proteins differ widely in size and oligomeric state, and have limited sequence homology []. The 20 aminoacyl-tRNA synthetases are divided into two classes, I and II. Class I aminoacyl-tRNA synthetases contain a characteristic Rossman fold catalytic domain and are mostly monomeric []. Class II aminoacyl-tRNA synthetases share an anti-parallel beta-sheet fold flanked by alpha-helices [], and are mostly dimeric or multimeric, containing at least three conserved regions [, , ]. However, tRNA binding involves an alpha-helical structure that is conserved between class I and class II synthetases. In reactions catalysed by the class I aminoacyl-tRNA synthetases, the aminoacyl group is coupled to the 2'-hydroxyl of the tRNA, while, in class II reactions, the 3'-hydroxyl site is preferred. The synthetases specific for arginine, cysteine, glutamic acid, glutamine, isoleucine, leucine, methionine, tyrosine, tryptophan and valine belong to class I synthetases. The synthetases specific for alanine, asparagine, aspartic acid, glycine, histidine, lysine, phenylalanine, proline, serine, and threonine belong to class-II synthetases []. Based on their mode of binding to the tRNA acceptor stem, both classes of tRNA synthetases have been subdivided into three subclasses, designated 1a, 1b, 1c and 2a, 2b, 2c. The class Ia aminoacyl-tRNA synthetases consist of the isoleucyl, methionyl, valyl, leucyl, cysteinyl, and arginyl-tRNA synthetases; the class Ib include the glutamyl and glutaminyl-tRNA synthetases, and the class Ic are the tyrosyl and tryptophanyl-tRNA synthetases [].; GO: 0000166 nucleotide binding, 0004812 aminoacyl-tRNA ligase activity, 0005524 ATP binding, 0006418 tRNA aminoacylation for protein translation, 0005737 cytoplasm; PDB: 2JAN_A 3P0J_B 3P0I_B 3P0H_B 1YID_C 2A4M_C 1YIA_C 1YI8_C 2EL7_A 3PRH_A ....
Probab=94.28 E-value=0.059 Score=58.26 Aligned_cols=62 Identities=23% Similarity=0.163 Sum_probs=39.2
Q ss_pred CCcEEEeeehhHHh-HHHHHHHHHHHhcCCCCceeEEEeeeEEccCCC-cccccccC-ccChhhH
Q 003578 539 PTTMLETGHDILFF-WVARMVMMGIEFTGSVPFSHVYLHGLIRDSQGR-KMSKTLGN-VIDPIDT 600 (809)
Q Consensus 539 p~d~~~~G~Di~~~-w~~~~~~~~~~l~~~~Pf~~v~~hg~vld~~G~-KMSKS~GN-~I~p~dl 600 (809)
-+|+...|.||... =.++-++-........|-...+++.++...+|. |||||.+| .|++.|-
T Consensus 149 ~~~~~~~G~DQ~~~~~l~rd~a~k~~~~~~~~~p~~l~~~~l~~l~G~~KMSKS~~ns~I~L~d~ 213 (292)
T PF00579_consen 149 KADLVPGGIDQRGHIELARDLARKFNYKEIFPKPAGLTSPLLPGLDGQKKMSKSDPNSAIFLDDS 213 (292)
T ss_dssp THSEEEEEGGGHHHHHHHHHHHHHHTHHSTSSS-EEEEETCBBSTTSSSBTTTTTTGGS-BTTTT
T ss_pred ccccccccchHHHHHHHHHHHHhhhcccccccCchheeeccccccCCccccCccCCccEEEEecc
Confidence 46788999999854 333333333222111122356677788889999 99999999 8876664
No 116
>COG0495 LeuS Leucyl-tRNA synthetase [Translation, ribosomal structure and biogenesis]
Probab=94.14 E-value=0.065 Score=64.65 Aligned_cols=78 Identities=26% Similarity=0.410 Sum_probs=63.3
Q ss_pred HHHHHHHHHHHCCCeeeeeccc--------------ccCcccccCCCeeEEeeccceeeeccHHHHHHHHHHhcCCce-E
Q 003578 373 ARKKLWSDLEETGLAVKKEPHT--------------LRVPRSQRGGEVIEPLVSKQWFVTMEPLAEKALHAVEKGELT-I 437 (809)
Q Consensus 373 a~~~i~~~L~~~g~~~~~~~~~--------------~~~p~c~r~~~~i~~~~~~qwfl~~~~~~~~~~~~~~~~~~~-~ 437 (809)
-.+-+.-.|.++|++.+.+... .....|||||.+++.+.-.||||+++++.+++++.+. .+. .
T Consensus 136 ~~QW~F~kL~ekGL~y~~~~~VnwcP~d~tvlaneqv~~g~~~r~~~~V~~kel~qw~~kit~yae~ll~~l~--~l~~~ 213 (814)
T COG0495 136 WIQWQFLKLYEKGLAYRKEAPVNWCPVDGTVLANEQVIDGGCWRCGEPVEIKELTQWFFKITDYADELLDDLD--KLATL 213 (814)
T ss_pred HHHHHHHHHHHCCCEEeccccceeCCCcCCccccceeecCCcccCCCceeEeeeEEEEEEechhHHHHHhhhh--hhccC
Confidence 3456778899999987755332 2334589999999999999999999999999999886 344 5
Q ss_pred ecchhHHHHHHHHhc
Q 003578 438 MPERFEKIYNHWLSN 452 (809)
Q Consensus 438 ~P~~~~~~~~~~l~~ 452 (809)
+|+..+..-.+||..
T Consensus 214 wPE~Vk~mq~nWIg~ 228 (814)
T COG0495 214 WPETVKGMQRNWIGP 228 (814)
T ss_pred CchhHHHHHHcCcCC
Confidence 899999999999954
No 117
>cd00808 GluRS_core catalytic core domain of discriminating glutamyl-tRNA synthetase. Discriminating Glutamyl-tRNA synthetase (GluRS) catalytic core domain . The discriminating form of GluRS is only found in bacteria and cellular organelles. GluRS is a monomer that attaches Glu to the appropriate tRNA. Like other class I tRNA synthetases, GluRS aminoacylates the 2'-OH of the nucleotide at the 3' end of the tRNA. The core domain is based on the Rossman fold and is responsible for the ATP-dependent formation of the enzyme bound aminoacyl-adenylate. It contains the characteristic class I HIGH and KMSKS motifs, which are involved in ATP binding.
Probab=94.09 E-value=0.17 Score=52.78 Aligned_cols=75 Identities=21% Similarity=0.197 Sum_probs=51.3
Q ss_pred CcEEEeeehhHHhHHHHHHHHHHHhcCCCCceeEEEeeeEEccCCCcccccccCccChhhHHHh-hCCchHHHHHhhCCC
Q 003578 540 TTMLETGHDILFFWVARMVMMGIEFTGSVPFSHVYLHGLIRDSQGRKMSKTLGNVIDPIDTIKE-FGADALRFTISLGTA 618 (809)
Q Consensus 540 ~d~~~~G~Di~~~w~~~~~~~~~~l~~~~Pf~~v~~hg~vld~~G~KMSKS~GN~I~p~dli~~-ygaD~lR~~ll~~~~ 618 (809)
++..+-|.|.+- ...+...+.-++.-..| .+.-++.+++.+|.||||+.|+ .++..+.+. +.+.+++-|++....
T Consensus 119 ithViRG~D~~~-~t~~q~~l~~aLg~~~p--~~~h~pll~~~~g~KLSKR~~~-~~l~~lr~~G~~p~ai~~~l~~lG~ 194 (239)
T cd00808 119 ITHVIRGEEHLS-STPKQILLYEALGWEPP--KFAHLPLILNPDGKKLSKRKGD-TSISDYREEGYLPEALLNYLALLGW 194 (239)
T ss_pred CCEEEEChhhhh-ChHHHHHHHHHcCCCCC--ceEeeccccCCCCCcccCCCCC-ccHHHHHHCCCCHHHHHHHHHHcCC
Confidence 556677888553 34444444444433334 5666777778999999999999 577776654 778999988886444
No 118
>cd00805 TyrRS_core catalytic core domain of tyrosinyl-tRNA synthetase. Tyrosinyl-tRNA synthetase (TyrRS) catalytic core domain. TyrRS is a homodimer which attaches Tyr to the appropriate tRNA. TyrRS is a class I tRNA synthetases, so it aminoacylates the 2'-OH of the nucleotide at the 3' end of the tRNA. The core domain is based on the Rossman fold and is responsible for the ATP-dependent formationof the enzyme bound aminoacyl-adenylate. It contains the class I characteristic HIGH and KMSKS motifs, which are involved in ATP binding.
Probab=93.99 E-value=0.097 Score=55.82 Aligned_cols=53 Identities=23% Similarity=0.107 Sum_probs=36.4
Q ss_pred CcEEEeeehhHHhH-HHHHHHHHHHhcCCCCceeEEEeeeEEccCCCcccccccCccC
Q 003578 540 TTMLETGHDILFFW-VARMVMMGIEFTGSVPFSHVYLHGLIRDSQGRKMSKTLGNVID 596 (809)
Q Consensus 540 ~d~~~~G~Di~~~w-~~~~~~~~~~l~~~~Pf~~v~~hg~vld~~G~KMSKS~GN~I~ 596 (809)
.|+...|.||.... .++-++-. +....| -.+.|.++...+|+|||||.+|.+|
T Consensus 152 ~~l~~~G~DQ~~~i~~~rd~a~r--~~~~~~--~~l~~~ll~~l~G~KMSKS~~~~~~ 205 (269)
T cd00805 152 VDLQLGGSDQRGNITLGRDLIRK--LGYKKV--VGLTTPLLTGLDGGKMSKSEGNAIW 205 (269)
T ss_pred CCeeEecHHHHHHHHHHHHHHHH--hCCCCc--EEEeeccccCCCCCcccCCCCCccc
Confidence 58899999997432 22223322 223334 3457888889999999999999985
No 119
>PRK12284 tryptophanyl-tRNA synthetase; Reviewed
Probab=93.71 E-value=0.093 Score=58.80 Aligned_cols=60 Identities=25% Similarity=0.345 Sum_probs=38.9
Q ss_pred CCCcEEEeeehhHH-hHHHHHHHHHHHhc-C----CCCceeEEE--eeeEEccCCCcccccccCccChh
Q 003578 538 YPTTMLETGHDILF-FWVARMVMMGIEFT-G----SVPFSHVYL--HGLIRDSQGRKMSKTLGNVIDPI 598 (809)
Q Consensus 538 ~p~d~~~~G~Di~~-~w~~~~~~~~~~l~-~----~~Pf~~v~~--hg~vld~~G~KMSKS~GN~I~p~ 598 (809)
|.+|+...|.||.. .-++|-++...... | ..| ..++. +..+...+|+|||||.+|.|.+.
T Consensus 147 y~ad~VPVG~DQ~qHlELaRdIA~rFN~~yg~~~F~~P-e~~i~~~~~~I~gLdg~KMSKS~~n~I~L~ 214 (431)
T PRK12284 147 FNAHKVPVGRDQIQHIEMARDIAQRFNHLYGGEFFVLP-EAVIEESVATLPGLDGRKMSKSYDNTIPLF 214 (431)
T ss_pred cCCCEEEEcchhHHHHHHHHHHHHHHhhhcCCcccCCC-ccccccccccccCCCCccccCCCCCEeeec
Confidence 45788889999984 55666665443211 1 134 33332 34666788999999999998543
No 120
>PRK12556 tryptophanyl-tRNA synthetase; Provisional
Probab=93.66 E-value=0.077 Score=58.17 Aligned_cols=59 Identities=29% Similarity=0.382 Sum_probs=37.8
Q ss_pred CCCcEEEeeehhHH-hHHHHHHHHHHHh--c--CCCCceeEE--EeeeEEccCCCcccccccCccCh
Q 003578 538 YPTTMLETGHDILF-FWVARMVMMGIEF--T--GSVPFSHVY--LHGLIRDSQGRKMSKTLGNVIDP 597 (809)
Q Consensus 538 ~p~d~~~~G~Di~~-~w~~~~~~~~~~l--~--~~~Pf~~v~--~hg~vld~~G~KMSKS~GN~I~p 597 (809)
|.+|+...|.||.. +=++|-++..... . -..| ..++ .+.++...+|+|||||.+|.|.+
T Consensus 148 ~~~d~VpvG~DQ~qhleLtRdiA~rfn~~yg~~f~~P-~~~~~~~~~~l~gLdg~KMSKS~~n~I~L 213 (332)
T PRK12556 148 FQATHVPVGKDQIQHIEIARDIATYFNHTFGDTFTLP-EYVIQEEGAILPGLDGRKMSKSYGNVIPL 213 (332)
T ss_pred ccCCEEEeccccHHHHHHHHHHHHHHHHhccccCCCc-eeccccccccccCCCCCCCCCCCCCcccc
Confidence 45788899999984 4555555543321 0 1234 3232 25556678899999999998854
No 121
>KOG1149 consensus Glutamyl-tRNA synthetase (mitochondrial) [Translation, ribosomal structure and biogenesis]
Probab=93.65 E-value=0.34 Score=53.34 Aligned_cols=132 Identities=19% Similarity=0.226 Sum_probs=83.7
Q ss_pred CCCCCCCCCCcchhhHHHHHHHHHHHHHHHCCCcccccCCCCCCCCchHHHHHHHHHHcCCCccccCHHHHHHHHHHHHH
Q 003578 96 MPPPNVTGSLHMGHAMFVTLEDIMVRYHRMKGRPTLWLPGTDHAGIATQLVVEKMLAAEGIKRVELSRDEFTKRVWEWKE 175 (809)
Q Consensus 96 ~~pPy~nG~lHiGH~~~~~~~Di~~Ry~rm~G~~V~~~~G~D~~Gl~~~~~~e~~~~~~g~~~~~~~~~~f~~~~~~~~~ 175 (809)
-.-|-|||.||+|-+++...-=++|| +..|.-++.+=-||.--+- .
T Consensus 37 RFAPSPTGfLHlGgLRTALfNYLfAr--k~gGkFiLRiEDTDq~R~v--------------------------------~ 82 (524)
T KOG1149|consen 37 RFAPSPTGFLHLGGLRTALFNYLFAR--KKGGKFILRIEDTDQKRLI--------------------------------R 82 (524)
T ss_pred eecCCCCcceehhhHHHHHHHHHHHH--hcCCeEEEEeccccccccc--------------------------------c
Confidence 33499999999999999877766766 3567666666666542110 1
Q ss_pred HHHHHHHHHHHHhcccccC----CCccccCC-hhhHHHHHHHHHHHHHcCceeec----------------Ccccc-cCC
Q 003578 176 KYGGTITSQIKRLGASCDW----TRERFTLD-EQLSRAVVEAFIRLHEKGLIYQG----------------SYMVN-WSP 233 (809)
Q Consensus 176 ~~~~~~~~~l~~lgi~~Dw----~~~~~T~d-~~~~~~v~~~f~~L~~~Gliy~~----------------~~~v~-w~p 233 (809)
.-.++|.+.|+.+|+..|= .-++-.+. .+-.+.-+..-.+|.+.|.+|+. ...+. |+-
T Consensus 83 gs~e~i~~~L~w~nl~~DEgP~~gG~~GPY~QS~R~eiY~kyae~Ll~sG~AYrCFCs~~rL~~lrk~A~k~~~~p~YD~ 162 (524)
T KOG1149|consen 83 GSEEAIYEDLKWANLDWDEGPGVGGPFGPYEQSERLEIYKKYAEKLLESGHAYRCFCSEERLDLLRKSALKKHEIPRYDR 162 (524)
T ss_pred chHHHHHHHHHhcCCCcccCCCcCCCCCchhhHHHHHHHHHHHHHHHhcCCeeEeccCHHHHHHHHHhhhccCCCCcccc
Confidence 1223467788888877771 11111111 11112233444568888999872 23333 555
Q ss_pred CCCcccCccccccccCCCceEEEEEEecC
Q 003578 234 NLQTAVSDLEVEYSEEPGTLYYIKYRVAG 262 (809)
Q Consensus 234 ~~~t~lsd~Ev~~~~~~~~~~~~~f~~~~ 262 (809)
+| .-+|++|++-...+|+-+-|+|++..
T Consensus 163 kc-a~ls~~ei~~~lakg~pf~iRFrl~~ 190 (524)
T KOG1149|consen 163 KC-ANLSDAEIKQKLAKGTPFTIRFRLPK 190 (524)
T ss_pred hh-cccCHHHHHHHHhcCCCeeEEEecCC
Confidence 44 45899999988899999999998865
No 122
>KOG0435 consensus Leucyl-tRNA synthetase [Translation, ribosomal structure and biogenesis]
Probab=92.93 E-value=0.073 Score=61.24 Aligned_cols=76 Identities=26% Similarity=0.431 Sum_probs=58.5
Q ss_pred HHHHHHHHHHHHCCCeeeeecccc---------------cCcccccCCCeeEEeeccceeeeccHHHHHHHHHHhcCCce
Q 003578 372 EARKKLWSDLEETGLAVKKEPHTL---------------RVPRSQRGGEVIEPLVSKQWFVTMEPLAEKALHAVEKGELT 436 (809)
Q Consensus 372 ~a~~~i~~~L~~~g~~~~~~~~~~---------------~~p~c~r~~~~i~~~~~~qwfl~~~~~~~~~~~~~~~~~~~ 436 (809)
.=.+-|.-.|-+.|++-..|.... ....+||||.++|...-.||||+++++++++++.++ .+.
T Consensus 158 KWTQwiFlkLfe~GLAYq~Ea~VNWDPvD~TVLAnEQVD~~G~SWRSGA~VEkK~LrQWfikttaYAk~L~d~L~--~L~ 235 (876)
T KOG0435|consen 158 KWTQWIFLKLFEKGLAYQAEAEVNWDPVDKTVLANEQVDADGCSWRSGAKVEKKKLRQWFIKTTAYAKRLLDGLE--TLP 235 (876)
T ss_pred HHHHHHHHHHHHhhhhhccccccccCcccceeecchhhcccCccccccchhhHHHHHHHHhhhhHHHHHHHHHHH--hhh
Confidence 445667778888888765543221 234589999999999999999999999999999998 343
Q ss_pred EecchhHHHHHHHH
Q 003578 437 IMPERFEKIYNHWL 450 (809)
Q Consensus 437 ~~P~~~~~~~~~~l 450 (809)
=+|+ .++.-.+||
T Consensus 236 ~W~~-vk~mQrnWI 248 (876)
T KOG0435|consen 236 EWPE-VKDMQRNWI 248 (876)
T ss_pred hhhh-HHHHHHhhc
Confidence 3565 778888888
No 123
>TIGR00396 leuS_bact leucyl-tRNA synthetase, eubacterial and mitochondrial family. The leucyl-tRNA synthetases belong to two families so broadly different that they are represented by separate models. This model includes both eubacterial and mitochondrial leucyl-tRNA synthetases. It generates higher scores for some valyl-tRNA synthetases than for any archaeal or eukaryotic cytosolic leucyl-tRNA synthetase. Note that the enzyme from Aquifex aeolicus is split into alpha and beta chains; neither chain is long enough to score above the trusted cutoff, but the alpha chain scores well above the noise cutoff. The beta chain must be found by a model and search designed for partial length matches.
Probab=92.34 E-value=0.24 Score=61.28 Aligned_cols=79 Identities=32% Similarity=0.529 Sum_probs=63.2
Q ss_pred HHHHHHHHHHHHCCCeeeeeccc--------------c-cCcccccCCCeeEEeeccceeeeccHHHHHHHHHHhcCCce
Q 003578 372 EARKKLWSDLEETGLAVKKEPHT--------------L-RVPRSQRGGEVIEPLVSKQWFVTMEPLAEKALHAVEKGELT 436 (809)
Q Consensus 372 ~a~~~i~~~L~~~g~~~~~~~~~--------------~-~~p~c~r~~~~i~~~~~~qwfl~~~~~~~~~~~~~~~~~~~ 436 (809)
++-..++..|-++|++...+... . ...+|+|||.+++.+..+||||+++++++++++.++. ..
T Consensus 130 ~~~~~~F~~L~~kGliy~~~~~v~wcp~~~t~La~~ev~~~g~~~~~g~~v~~~~~~~~f~~i~~~~~~l~~~l~~--~~ 207 (842)
T TIGR00396 130 KWTQWIFLELFEKGLAYVKEADVNWCPNDGTVLANEQVDSDGRSWRGGTPVEKKELKQWFLKITAYAEELLNDLEE--LD 207 (842)
T ss_pred HHHHHHHHHHHHCCCeEeeccceEEeCCCCCCccHHHHhhcCccccCCCcceEeecceeEEehhhhHHHHHHHHhh--hc
Confidence 55667788899999875533211 1 1257899999999999999999999999999999985 44
Q ss_pred EecchhHHHHHHHHhc
Q 003578 437 IMPERFEKIYNHWLSN 452 (809)
Q Consensus 437 ~~P~~~~~~~~~~l~~ 452 (809)
.+|++.+....+||-.
T Consensus 208 ~wp~~v~~~q~~wig~ 223 (842)
T TIGR00396 208 HWPESVKEMQRNWIGK 223 (842)
T ss_pred cccHHHHHHHHhcccc
Confidence 6999999999999843
No 124
>PRK08560 tyrosyl-tRNA synthetase; Validated
Probab=92.26 E-value=0.13 Score=56.39 Aligned_cols=59 Identities=25% Similarity=0.215 Sum_probs=41.1
Q ss_pred CCCcEEEeeehhHH-hHHHHHHHHHHHhcCCCCceeEEEeeeEEccCCC--cccccc-cCccChhhH
Q 003578 538 YPTTMLETGHDILF-FWVARMVMMGIEFTGSVPFSHVYLHGLIRDSQGR--KMSKTL-GNVIDPIDT 600 (809)
Q Consensus 538 ~p~d~~~~G~Di~~-~w~~~~~~~~~~l~~~~Pf~~v~~hg~vld~~G~--KMSKS~-GN~I~p~dl 600 (809)
+.+|+...|.||.. +=++|-++-. +....| ..+.|.++...+|. |||||. ||.|++.|=
T Consensus 167 ~~ad~vpvG~DQ~~h~~l~Rdia~~--~n~~~p--~~l~~~~l~~L~g~~~KMSKS~p~~~I~L~D~ 229 (329)
T PRK08560 167 LDVDIAVGGMDQRKIHMLAREVLPK--LGYKKP--VCIHTPLLTGLDGGGIKMSKSKPGSAIFVHDS 229 (329)
T ss_pred hCCCEEEechhHHHHHHHHHHhhHh--cCCCCc--eEEEcCccCCCCCCCCCCcCCCCCCeecccCC
Confidence 45889999999985 3344444332 233345 34568888888887 999999 999987653
No 125
>TIGR00233 trpS tryptophanyl-tRNA synthetase. This model represents tryptophanyl-tRNA synthetase. Some members of the family have a pfam00458 domain amino-terminal to the region described by this model.
Probab=91.85 E-value=0.12 Score=56.70 Aligned_cols=43 Identities=16% Similarity=0.224 Sum_probs=30.6
Q ss_pred CEEEeCCCCCCCCCCcchhhHHHHHHHHHHHHHHHCCCcccccCCCCC
Q 003578 91 PFVISMPPPNVTGSLHMGHAMFVTLEDIMVRYHRMKGRPTLWLPGTDH 138 (809)
Q Consensus 91 ~f~i~~~pPy~nG~lHiGH~~~~~~~Di~~Ry~rm~G~~V~~~~G~D~ 138 (809)
++.+.+| --|||.+||||..+.+. .++....|++|.+..+-.|
T Consensus 2 ~~~v~~G-~~PTG~~HlG~~l~~~~----~~~~~q~~~~~~i~IaD~h 44 (328)
T TIGR00233 2 KFRVLTG-IQPSGKMHLGHYLGAIQ----TKWLQQFGVELFICIADLH 44 (328)
T ss_pred CCEEEEe-eCCCcHhHHHHHHHHHH----HHHHHhCCCCEEEEeecch
Confidence 4556666 58899999999887654 2344467999888766554
No 126
>PRK12285 tryptophanyl-tRNA synthetase; Reviewed
Probab=91.31 E-value=0.16 Score=56.54 Aligned_cols=61 Identities=18% Similarity=0.213 Sum_probs=41.1
Q ss_pred HHHHhcCCCCCCCCC--------CCCCEEEeCCCCCCCCCCcchhhHHHHHHHHHHHHHHHCCCcccccCCCCC
Q 003578 73 NWWESQGYFKPNFER--------GSDPFVISMPPPNVTGSLHMGHAMFVTLEDIMVRYHRMKGRPTLWLPGTDH 138 (809)
Q Consensus 73 ~~W~~~~~f~~~~~~--------~~~~f~i~~~pPy~nG~lHiGH~~~~~~~Di~~Ry~rm~G~~V~~~~G~D~ 138 (809)
..+-.+++|-...+- ++++|.+.+| --|||.+||||.. .-..++++++ .|++|.+..+-+|
T Consensus 40 h~~~rR~~~~~hrd~d~il~~~~~~~~~~iytG-~~PSG~lHLGh~~---~~~~~~~lQ~-~g~~~~i~IaD~h 108 (368)
T PRK12285 40 HPLMRRGIIFGHRDYDKILEAYRNGKPFAVYTG-FMPSGPMHIGHKM---VFDELKWHQE-FGANVYIPIADDE 108 (368)
T ss_pred chHHhcCeeeecCCHHHHHHHHhcCCCeEEEEc-cCCCCCccHHHHH---HHHHHHHHHh-cCCCEEEEecchH
Confidence 445556665543321 2567888888 6888999999964 3445666666 7888887776555
No 127
>COG0180 TrpS Tryptophanyl-tRNA synthetase [Translation, ribosomal structure and biogenesis]
Probab=91.29 E-value=0.17 Score=54.38 Aligned_cols=59 Identities=22% Similarity=0.230 Sum_probs=38.1
Q ss_pred CCcEEEeeehhHH-hHHHHHHHHHHHhc----CCCCceeEEEee--eEEccCC-CcccccccC-ccChhh
Q 003578 539 PTTMLETGHDILF-FWVARMVMMGIEFT----GSVPFSHVYLHG--LIRDSQG-RKMSKTLGN-VIDPID 599 (809)
Q Consensus 539 p~d~~~~G~Di~~-~w~~~~~~~~~~l~----~~~Pf~~v~~hg--~vld~~G-~KMSKS~GN-~I~p~d 599 (809)
.+++.-.|.||-. .=++|-++...... -.+| ..+.|. .+...+| +|||||.+| +|.+.|
T Consensus 145 ~a~~VPVG~DQ~qHleLtRDiA~rfn~~y~~~f~~P--~~~~~~~~~i~gL~g~~KMSkS~~ns~I~L~D 212 (314)
T COG0180 145 QATLVPVGEDQDQHLELTRDIARRFNHLYGEVFPLP--EALISKVARLPGLDGPGKMSKSDPNSAIFLLD 212 (314)
T ss_pred cCCeeccCCCchHHHHHHHHHHHHHHhhcCCccCCc--cccccCCCcccCCCCCCcccccCCCCeeeccC
Confidence 3466678999873 44555555443311 1233 566777 8888899 899999999 775433
No 128
>PRK00390 leuS leucyl-tRNA synthetase; Validated
Probab=91.29 E-value=0.5 Score=58.33 Aligned_cols=101 Identities=23% Similarity=0.385 Sum_probs=72.8
Q ss_pred HHHHHHHHHHHHHCCCeeeeecc--------------cccCcccccCCCeeEEeeccceeeeccHHHHHHHHHHhcCCce
Q 003578 371 FEARKKLWSDLEETGLAVKKEPH--------------TLRVPRSQRGGEVIEPLVSKQWFVTMEPLAEKALHAVEKGELT 436 (809)
Q Consensus 371 ~~a~~~i~~~L~~~g~~~~~~~~--------------~~~~p~c~r~~~~i~~~~~~qwfl~~~~~~~~~~~~~~~~~~~ 436 (809)
.++-..++..|-++|++...+.. +...++|++||.+++.+..+||||+++++++++++.++... .
T Consensus 132 ~~~v~~~f~~L~~~Gliy~~~~~v~wcp~~~t~La~~ev~~~~~~~~~~~~~~~~~~~~f~~i~~~~~~L~~~l~~~~-~ 210 (805)
T PRK00390 132 YKWTQWIFLKLYEKGLAYRKESPVNWCPVDGTVLANEQVIDGRCWRCGAPVEKKELRQWFLKITDYADELLDDLDKLE-D 210 (805)
T ss_pred HHHHHHHHHHHHHCCCEEEecCEEEecCCcCCCCCHHHhhCCeecccCCeeEEEecceeeEecchhHHHHHHHHHhhc-c
Confidence 35667888999999998764422 23346789999999999999999999999999999997533 3
Q ss_pred EecchhHHHHHHHHhcCCceeeeccc-cccceeeEEEE
Q 003578 437 IMPERFEKIYNHWLSNIKDWCISRQL-WWGHRIPVWYI 473 (809)
Q Consensus 437 ~~P~~~~~~~~~~l~~l~Dw~ISRq~-~WG~piP~~~~ 473 (809)
+|+..+....+||..-.-+.|.=.. .-+..+.||..
T Consensus 211 -w~~~v~~~~~~wig~~~~~~i~f~~~~~~~~l~v~TT 247 (805)
T PRK00390 211 -WPEKVKTMQRNWIGRSEGAEVTFKVEDSDEKIEVFTT 247 (805)
T ss_pred -CcHHHHHHHHhhccccceEEEEEEccCCCCEEEEEeC
Confidence 5889999999998644433331110 01245677655
No 129
>PRK12282 tryptophanyl-tRNA synthetase II; Reviewed
Probab=91.28 E-value=0.18 Score=55.28 Aligned_cols=62 Identities=26% Similarity=0.302 Sum_probs=38.7
Q ss_pred CCCcEEEeeehhHH-hHHHHHHHHHHHhcCCCCc----eeEEE-eeeEEccCC-CcccccccCccChhh
Q 003578 538 YPTTMLETGHDILF-FWVARMVMMGIEFTGSVPF----SHVYL-HGLIRDSQG-RKMSKTLGNVIDPID 599 (809)
Q Consensus 538 ~p~d~~~~G~Di~~-~w~~~~~~~~~~l~~~~Pf----~~v~~-hg~vld~~G-~KMSKS~GN~I~p~d 599 (809)
|.+|+...|.||.. +=++|-++-.+......|+ +.+.. |.++...+| .|||||.+|.|.+.|
T Consensus 141 ~~~d~vpvG~DQ~~h~~laRdiA~~~n~~~~~~~~~~p~~~~~~~~~i~~L~g~~KMSKS~~~~I~L~D 209 (333)
T PRK12282 141 FKATLVPVGDDQLPMIEQTREIVRRFNSLYGTDVLVEPEALLPEAGRLPGLDGKAKMSKSLGNAIYLSD 209 (333)
T ss_pred hCCCEEEeccccHHHHHHHHHHHHHHhhhcCCccccCchhcccCCCcccCCCCCCcCCCCCCCeeeeeC
Confidence 56899999999974 4556666544431111121 11211 446666776 899999999987655
No 130
>PTZ00126 tyrosyl-tRNA synthetase; Provisional
Probab=90.55 E-value=0.28 Score=54.81 Aligned_cols=59 Identities=24% Similarity=0.210 Sum_probs=37.6
Q ss_pred CCCcEEEeeehhH-HhHHHHHHHHHHHhcCCCCceeEEEeeeEEcc-CC-CcccccccC-ccChhh
Q 003578 538 YPTTMLETGHDIL-FFWVARMVMMGIEFTGSVPFSHVYLHGLIRDS-QG-RKMSKTLGN-VIDPID 599 (809)
Q Consensus 538 ~p~d~~~~G~Di~-~~w~~~~~~~~~~l~~~~Pf~~v~~hg~vld~-~G-~KMSKS~GN-~I~p~d 599 (809)
+.+|+...|.||. ++=++|-++-..... ..| -+..|.++... +| +|||||.+| .|.+.|
T Consensus 209 l~adivpvG~DQ~~~~~LaRdia~~~~~~-~~~--~~~~~~~lpgL~dg~~KMSKS~~ns~I~L~D 271 (383)
T PTZ00126 209 LKADICQLGMDQRKVNMLAREYCDKKKIK-KKP--IILSHHMLPGLLEGQEKMSKSDPNSAIFMED 271 (383)
T ss_pred cCCCEEEeCccHHHHHHHHHHHHHHhCCC-CCc--eeecccccccCCCCCCCCCcCCCCCeecCCC
Confidence 4588889999995 444555444333211 123 34467777777 45 799999988 577665
No 131
>cd00806 TrpRS_core catalytic core domain of tryptophanyl-tRNA synthetase. Tryptophanyl-tRNA synthetase (TrpRS) catalytic core domain. TrpRS is a homodimer which attaches Tyr to the appropriate tRNA. TrpRS is a class I tRNA synthetases, so it aminoacylates the 2'-OH of the nucleotide at the 3' end of the tRNA. The core domain is based on the Rossman fold and is responsible for the ATP-dependent formation of the enzyme bound aminoacyl-adenylate. It contains class I characteristic HIGH and KMSKS motifs, which are involved in ATP binding
Probab=89.97 E-value=0.32 Score=52.13 Aligned_cols=59 Identities=24% Similarity=0.196 Sum_probs=37.5
Q ss_pred CCcEEEeeehhHH-hHHHHHHHHHHHhc----CCCCceeEEEe--eeEEccCC--Cccccccc-CccChhh
Q 003578 539 PTTMLETGHDILF-FWVARMVMMGIEFT----GSVPFSHVYLH--GLIRDSQG--RKMSKTLG-NVIDPID 599 (809)
Q Consensus 539 p~d~~~~G~Di~~-~w~~~~~~~~~~l~----~~~Pf~~v~~h--g~vld~~G--~KMSKS~G-N~I~p~d 599 (809)
.+++...|.||.. +=+++-++...... -..| ..+.| .++...+| .|||||.+ |.|++.|
T Consensus 137 ~~~~vpvG~DQ~~h~~l~Rdia~r~n~~~~~~~~~P--~~l~~~~~~i~~l~g~~~KMSKS~~~~~I~L~d 205 (280)
T cd00806 137 KACLVPVGIDQDPHLELTRDIARRFNKLYGEIFPKP--AALLSKGAFLPGLQGPSKKMSKSDPNNAIFLTD 205 (280)
T ss_pred cCCEEeeccccHHHHHHHHHHHHHhccccccccCCC--eeeccCCCccccCCCCCCcccCCCCCCeEEeeC
Confidence 3577888999974 33344443332210 1234 45566 77777776 59999999 9998765
No 132
>TIGR00234 tyrS tyrosyl-tRNA synthetase. This tyrosyl-tRNA synthetase model starts picking up tryptophanyl-tRNA synthetases at scores of 0 and below. The proteins found by this model have a deep split between two groups. One group contains bacterial and organellar eukaryotic examples. The other contains archaeal and cytosolic eukaryotic examples.
Probab=89.20 E-value=0.51 Score=52.82 Aligned_cols=57 Identities=19% Similarity=0.133 Sum_probs=35.4
Q ss_pred CcEEEeeehhHHhH-HHHHHHHHHHhcCCCCceeEEEeeeEEccCCCcccccccCccChhhH
Q 003578 540 TTMLETGHDILFFW-VARMVMMGIEFTGSVPFSHVYLHGLIRDSQGRKMSKTLGNVIDPIDT 600 (809)
Q Consensus 540 ~d~~~~G~Di~~~w-~~~~~~~~~~l~~~~Pf~~v~~hg~vld~~G~KMSKS~GN~I~p~dl 600 (809)
+|+.+.|.||...- ..+.++.- ...+.+| .+...++...+|.|||||.||.|+..+-
T Consensus 178 ~di~~gG~DQ~~ni~~g~dLar~--~~~~~~~--~~t~pLl~~~dg~KmgKS~~~~i~l~~~ 235 (377)
T TIGR00234 178 VDLQIGGSDQWGNIRKGRDLIRR--NLPSLGF--GLTVPLLTPADGEKMGKSGGGAVSLDEG 235 (377)
T ss_pred CCeeEecchhHHHHHHHHHHHHH--hcCCCce--eeceeeecCCCCCCccCCCCCcccCCcc
Confidence 67899999996432 22222222 2233232 2344455567899999999999886543
No 133
>COG0162 TyrS Tyrosyl-tRNA synthetase [Translation, ribosomal structure and biogenesis]
Probab=88.73 E-value=0.4 Score=53.54 Aligned_cols=52 Identities=17% Similarity=0.104 Sum_probs=34.4
Q ss_pred CcEEEeeehhHHhHHHHHHHHHH--HhcCCCCceeEEEeeeEEccCCCcccccccCccC
Q 003578 540 TTMLETGHDILFFWVARMVMMGI--EFTGSVPFSHVYLHGLIRDSQGRKMSKTLGNVID 596 (809)
Q Consensus 540 ~d~~~~G~Di~~~w~~~~~~~~~--~l~~~~Pf~~v~~hg~vld~~G~KMSKS~GN~I~ 596 (809)
.|+.++|.||-+.+.. +..+ .+.. .+ ...+.+-++.+.+|.|||||.||.++
T Consensus 181 ~dlq~GG~DQ~~ni~~---grdl~rr~g~-~~-~~~lt~PLL~~ldG~KmgKs~~~a~~ 234 (401)
T COG0162 181 KDLQLGGSDQWGNILA---GRDLIRRLGQ-KK-VVGLTTPLLTGLDGKKMGKSEGGAVW 234 (401)
T ss_pred cchhcCChHHHHHHHH---HHHHHHHhCC-CC-eEEEEeccccCCCCCcccccCCCceE
Confidence 6788999998655432 3222 1222 23 34556667778999999999999554
No 134
>PRK12285 tryptophanyl-tRNA synthetase; Reviewed
Probab=88.67 E-value=1.3 Score=49.34 Aligned_cols=58 Identities=21% Similarity=0.212 Sum_probs=36.9
Q ss_pred CcEEEeeehhHH-hHHHHHHHHHHH--hcCCCCceeEEEeeeEEccCCCcccccc-cCccChhh
Q 003578 540 TTMLETGHDILF-FWVARMVMMGIE--FTGSVPFSHVYLHGLIRDSQGRKMSKTL-GNVIDPID 599 (809)
Q Consensus 540 ~d~~~~G~Di~~-~w~~~~~~~~~~--l~~~~Pf~~v~~hg~vld~~G~KMSKS~-GN~I~p~d 599 (809)
.++...|.||.. +=++|-++-.+. ..-..| ..+.|-++...+|.|||||. +|.|.+.|
T Consensus 204 ~~lvPvG~DQ~~h~~ltRdiA~r~n~~~gf~~P--~~l~~~~lpgL~G~KMSkS~~~s~I~L~D 265 (368)
T PRK12285 204 PTLVPVGIDQDPHIRLTRDIAERLHGGYGFIKP--SSTYHKFMPGLTGGKMSSSKPESAIYLTD 265 (368)
T ss_pred ceEEEeccchHHHHHHHHHHHHHHhhhcCCCCc--hhHhhhcccCCCCCcCCCCCCCCeeeccC
Confidence 567778888874 445555544330 111234 33456677788999999998 67887655
No 135
>PRK00927 tryptophanyl-tRNA synthetase; Reviewed
Probab=88.25 E-value=0.38 Score=52.93 Aligned_cols=61 Identities=25% Similarity=0.320 Sum_probs=38.9
Q ss_pred CCCcEEEeeehhHH-hHHHHHHHHHHHhc-C---CCCceeEEE-e-eeEEccCCC--ccccccc---CccChhh
Q 003578 538 YPTTMLETGHDILF-FWVARMVMMGIEFT-G---SVPFSHVYL-H-GLIRDSQGR--KMSKTLG---NVIDPID 599 (809)
Q Consensus 538 ~p~d~~~~G~Di~~-~w~~~~~~~~~~l~-~---~~Pf~~v~~-h-g~vld~~G~--KMSKS~G---N~I~p~d 599 (809)
+.+|+...|.||.. +=++|-++-..... + ..| ..++. | ..+...+|. |||||.+ |.|.+.|
T Consensus 137 ~~~divpvG~DQ~~h~elaRdia~~~n~~~~~~f~~P-~~i~~~~~~~l~gL~g~~~KMSKS~~~~~~~I~l~D 209 (333)
T PRK00927 137 YKADLVPVGEDQKQHLELTRDIARRFNNLYGEVFPVP-EPLIPKVGARVMGLDGPTKKMSKSDPNDNNTINLLD 209 (333)
T ss_pred cCCCEEeeccchHHHHHHHHHHHHHhhhhccccCCCC-hhhhccccccccCCCCCCCCCCCCCCCCCCeEEeeC
Confidence 45789999999984 45555555433211 1 245 33332 2 456677776 9999999 8887665
No 136
>PRK12283 tryptophanyl-tRNA synthetase; Reviewed
Probab=87.71 E-value=0.52 Score=52.50 Aligned_cols=24 Identities=33% Similarity=0.459 Sum_probs=20.6
Q ss_pred eeeEEccCCCcccccccCccChhh
Q 003578 576 HGLIRDSQGRKMSKTLGNVIDPID 599 (809)
Q Consensus 576 hg~vld~~G~KMSKS~GN~I~p~d 599 (809)
|..+...+|+|||||.+|.|.+.|
T Consensus 254 ~~~I~gLdg~KMSKS~~n~I~L~D 277 (398)
T PRK12283 254 ASKMPGLDGQKMSKSYGNTIGLRE 277 (398)
T ss_pred CCcccCCCCCcCCCCCCCeeeCcC
Confidence 677888899999999999988655
No 137
>cd00806 TrpRS_core catalytic core domain of tryptophanyl-tRNA synthetase. Tryptophanyl-tRNA synthetase (TrpRS) catalytic core domain. TrpRS is a homodimer which attaches Tyr to the appropriate tRNA. TrpRS is a class I tRNA synthetases, so it aminoacylates the 2'-OH of the nucleotide at the 3' end of the tRNA. The core domain is based on the Rossman fold and is responsible for the ATP-dependent formation of the enzyme bound aminoacyl-adenylate. It contains class I characteristic HIGH and KMSKS motifs, which are involved in ATP binding
Probab=87.34 E-value=1 Score=48.29 Aligned_cols=37 Identities=24% Similarity=0.287 Sum_probs=25.3
Q ss_pred CCCCCCCcchhhHHHHHHHHHHHHHHHCCCcccccCCCCC
Q 003578 99 PNVTGSLHMGHAMFVTLEDIMVRYHRMKGRPTLWLPGTDH 138 (809)
Q Consensus 99 Py~nG~lHiGH~~~~~~~Di~~Ry~rm~G~~V~~~~G~D~ 138 (809)
--|||.|||||..+.+.. +.+.++ .|+++.+..+-+|
T Consensus 6 ~~PTG~lHLG~~~~al~~--~~~lQ~-ag~~~~~~IaD~h 42 (280)
T cd00806 6 IQPSGSLHLGHYLGAFRF--WVWLQE-AGYELFFFIADLH 42 (280)
T ss_pred eCCCchhhHHHHHHHHHH--HHHHHh-CCCCEEEEecchH
Confidence 368999999999885432 333433 3888888776544
No 138
>PF05746 DALR_1: DALR anticodon binding domain; InterPro: IPR008909 The aminoacyl-tRNA synthetases (6.1.1. from EC) catalyse the attachment of an amino acid to its cognate transfer RNA molecule in a highly specific two-step reaction. These proteins differ widely in size and oligomeric state, and have limited sequence homology []. The 20 aminoacyl-tRNA synthetases are divided into two classes, I and II. Class I aminoacyl-tRNA synthetases contain a characteristic Rossman fold catalytic domain and are mostly monomeric []. Class II aminoacyl-tRNA synthetases share an anti-parallel beta-sheet fold flanked by alpha-helices [], and are mostly dimeric or multimeric, containing at least three conserved regions [, , ]. However, tRNA binding involves an alpha-helical structure that is conserved between class I and class II synthetases. In reactions catalysed by the class I aminoacyl-tRNA synthetases, the aminoacyl group is coupled to the 2'-hydroxyl of the tRNA, while, in class II reactions, the 3'-hydroxyl site is preferred. The synthetases specific for arginine, cysteine, glutamic acid, glutamine, isoleucine, leucine, methionine, tyrosine, tryptophan and valine belong to class I synthetases. The synthetases specific for alanine, asparagine, aspartic acid, glycine, histidine, lysine, phenylalanine, proline, serine, and threonine belong to class-II synthetases []. Based on their mode of binding to the tRNA acceptor stem, both classes of tRNA synthetases have been subdivided into three subclasses, designated 1a, 1b, 1c and 2a, 2b, 2c. This all alpha helical domain is the anticodon binding domain of Arginyl tRNA synthetase. This domain is known as the DALR domain after characteristic conserved amino acids [].; GO: 0004814 arginine-tRNA ligase activity, 0005524 ATP binding, 0006420 arginyl-tRNA aminoacylation; PDB: 2ZUE_A 2ZUF_A 3FNR_A 1F7V_A 1F7U_A 1BS2_A 1IQ0_A.
Probab=87.22 E-value=3.4 Score=37.81 Aligned_cols=78 Identities=14% Similarity=0.197 Sum_probs=55.6
Q ss_pred CchhHHHHHHHHHHHHHHHHHhhcCChHHHHHHHHHHHHHhhHHHHHHHhhhhhhcCCCcH---HHHHHHHHHHHHHHHH
Q 003578 677 PLPECWVVSKLHMLIDTVTASYDKYFFGDVGRETYDFFWSDFADWYIEASKARLYRSEYDS---DAIIAQAVLLYIFENI 753 (809)
Q Consensus 677 ~~~d~~il~~l~~~~~~v~~a~e~~~f~~a~~~i~~f~~~~~~n~Yi~~~k~~l~~~~~~~---~~~~~~~~l~~vl~~l 753 (809)
+..++.++..+..+...+..+++.++++.+++.++++. ..++++| .+.++..+++.. .|.........++...
T Consensus 32 ~~~e~~L~~~l~~~~~~l~~a~~~~~p~~l~~yL~~La-~~f~~fy---~~~~I~~~~~~~~~~~RL~Ll~~v~~vl~~~ 107 (119)
T PF05746_consen 32 EEEERELLKQLARFPDVLEKAAKDLEPHKLCDYLYELA-QAFNSFY---DNVRILDEDEEIRKNNRLALLKAVRQVLKNG 107 (119)
T ss_dssp SHHHHHHHHHHCTHHHHHHHHHHHT-CHHHHHHHHHHH-HHHHHHH---HHS-STTSTTCHH-HHHHHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHH-HHHHHHH---hhccccccchHHHHHHHHHHHHHHHHHHHHH
Confidence 34677899999999999999999999999999999998 5677777 344666654442 2344445555666666
Q ss_pred HHHhc
Q 003578 754 LKLLH 758 (809)
Q Consensus 754 ~~lL~ 758 (809)
+.+|.
T Consensus 108 l~llg 112 (119)
T PF05746_consen 108 LDLLG 112 (119)
T ss_dssp HHHTT
T ss_pred HHHcC
Confidence 66664
No 139
>cd00807 GlnRS_core catalytic core domain of glutaminyl-tRNA synthetase. Glutaminyl-tRNA synthetase (GlnRS) cataytic core domain. These enzymes attach Gln to the appropriate tRNA. Like other class I tRNA synthetases, they aminoacylate the 2'-OH of the nucleotide at the 3' end of the tRNA. The core domain is based on the Rossman fold and is responsible for the ATP-dependent formation of the enzyme bound aminoacyl-adenylate. GlnRS contains the characteristic class I HIGH and KMSKS motifs, which are involved in ATP binding. These enzymes function as monomers. Archaea and most bacteria lack GlnRS. In these organisms, the "non-discriminating" form of GluRS aminoacylates both tRNA(Glu) and tRNA(Gln) with Glu, which is converted to Gln when appropriate by a transamidation enzyme.
Probab=87.02 E-value=2.1 Score=44.46 Aligned_cols=64 Identities=16% Similarity=0.063 Sum_probs=44.8
Q ss_pred eEEEeeeEEccCCCcccccccC------cc---------ChhhHHH-hhCCchHHHHHhhCCC-CCcccccHHHHHH-HH
Q 003578 572 HVYLHGLIRDSQGRKMSKTLGN------VI---------DPIDTIK-EFGADALRFTISLGTA-GQDLSLSIERLTA-NK 633 (809)
Q Consensus 572 ~v~~hg~vld~~G~KMSKS~GN------~I---------~p~dli~-~ygaD~lR~~ll~~~~-~~d~~fs~~~l~~-~~ 633 (809)
.++..+++ +.+|+|+||+.+- .+ +...+.. .+-+++++=|++..+. ..+..|+++.+.. |+
T Consensus 151 ~~~~~~hl-n~~g~kLSKR~~~~~i~~g~~~~wddpr~~~~~~l~~~G~~peal~~~l~~lG~s~~~~~~~~~~l~~~nr 229 (238)
T cd00807 151 HQWEFSRL-NLTYTVMSKRKLLQLVDEGYVDGWDDPRLPTLRGLRRRGVTPEAIRQFILRQGVSKADSTIDWDKLEACVR 229 (238)
T ss_pred ceeEEEEE-CCCCCCccCcCchhccccCCcccccCcchHHHHHHHHcCCCHHHHHHHHHHhCCCCCCcccCHHHHHHHHH
Confidence 33334445 7999999999852 12 1233333 3778999999988888 8999999999986 55
Q ss_pred HHH
Q 003578 634 AFT 636 (809)
Q Consensus 634 ~~~ 636 (809)
+.+
T Consensus 230 ~~i 232 (238)
T cd00807 230 KDL 232 (238)
T ss_pred HHh
Confidence 444
No 140
>cd09287 GluRS_non_core catalytic core domain of non-discriminating glutamyl-tRNA synthetase. Non-discriminating Glutamyl-tRNA synthetase (GluRS) cataytic core domain. These enzymes attach Glu to the appropriate tRNA. Like other class I tRNA synthetases, they aminoacylate the 2'-OH of the nucleotide at the 3' end of the tRNA. The core domain is based on the Rossman fold and is responsible for the ATP-dependent formation of the enzyme bound aminoacyl-adenylate. It contains the characteristic class I HIGH and KMSKS motifs, which are involved in ATP binding. These enzymes function as monomers. Archaea and most bacteria lack GlnRS. In these organisms, the "non-discriminating" form of GluRS aminoacylates both tRNA(Glu) and tRNA(Gln) with Glu, which is converted to Gln when appropriate by a transamidation enzyme.
Probab=86.44 E-value=1.8 Score=45.12 Aligned_cols=65 Identities=20% Similarity=0.168 Sum_probs=45.3
Q ss_pred eEEEeeeEEccCCCcccccccC------c---------cChhhHHHh-hCCchHHHHHhhCCC-CCcccccHHHHHH-HH
Q 003578 572 HVYLHGLIRDSQGRKMSKTLGN------V---------IDPIDTIKE-FGADALRFTISLGTA-GQDLSLSIERLTA-NK 633 (809)
Q Consensus 572 ~v~~hg~vld~~G~KMSKS~GN------~---------I~p~dli~~-ygaD~lR~~ll~~~~-~~d~~fs~~~l~~-~~ 633 (809)
.+.-+..++ .+|+||||+.+. . .+...+.+. |.+++++-|++..+. ..+..++++.+.. |+
T Consensus 153 ~~~H~pll~-~~~~kLSKR~~~~~i~~~~~~~w~dp~~~~~~~lr~~G~~p~ai~~~~~~lG~s~~~~~~~~~~l~~~~r 231 (240)
T cd09287 153 ETIHWGRLK-IEGGKLSTSKIRKGIESGEYEGWDDPRLPTLRALRRRGIRPEAIRDFIIEVGVKQTDATISWENLYAINR 231 (240)
T ss_pred cEEeeeeec-CCCCeeccccccccccccccccccCcchHHHHHHHHCCCCHHHHHHHHHHhCCCCCCCccCHHHHHHHHH
Confidence 444445554 678999999842 1 233444443 778999988888777 8899999998876 56
Q ss_pred HHHH
Q 003578 634 AFTN 637 (809)
Q Consensus 634 ~~~~ 637 (809)
+.++
T Consensus 232 ~~l~ 235 (240)
T cd09287 232 KLID 235 (240)
T ss_pred HHhc
Confidence 5554
No 141
>cd00395 Tyr_Trp_RS_core catalytic core domain of tyrosinyl-tRNA and tryptophanyl-tRNA synthetase. Tyrosinyl-tRNA synthetase (TyrRS)/Tryptophanyl-tRNA synthetase (TrpRS) catalytic core domain. These enzymes attach Tyr or Trp, respectively, to the appropriate tRNA. These class I enzymes are homodimers, which aminoacylate the 2'-OH of the nucleotide at the 3' of the appropriate tRNA. The core domain is based on the Rossman fold and is responsible for the ATP-dependent formation of the enzyme bound aminoacyl-adenylate. It contains the class I characteristic HIGH and KMSKS motifs, which are involved in ATP binding.
Probab=86.29 E-value=0.82 Score=48.85 Aligned_cols=33 Identities=30% Similarity=0.505 Sum_probs=24.1
Q ss_pred CCCC-CCcchhhHHHHHHHHHHHHHHHCCCcccccCCC
Q 003578 100 NVTG-SLHMGHAMFVTLEDIMVRYHRMKGRPTLWLPGT 136 (809)
Q Consensus 100 y~nG-~lHiGH~~~~~~~Di~~Ry~rm~G~~V~~~~G~ 136 (809)
-||| .|||||..+ -..+.++++ .|+++.++.|-
T Consensus 7 ~PTg~~lHlGh~~~---l~~~~~lq~-~g~~~~~~I~d 40 (273)
T cd00395 7 DPTADSLHIGHLIG---LLTFRRFQH-AGHRPIFLIGG 40 (273)
T ss_pred cCCCCCccHHHHHH---HHHHHHHHH-CCCCEEEEEec
Confidence 5799 699999887 233455554 69999887764
No 142
>PLN02486 aminoacyl-tRNA ligase
Probab=85.73 E-value=3.5 Score=46.16 Aligned_cols=43 Identities=14% Similarity=0.125 Sum_probs=30.2
Q ss_pred CCCEEEeCCCCCCCC-CCcchhhHHHHHHHHHHHHHHHCCCcccccCC
Q 003578 89 SDPFVISMPPPNVTG-SLHMGHAMFVTLEDIMVRYHRMKGRPTLWLPG 135 (809)
Q Consensus 89 ~~~f~i~~~pPy~nG-~lHiGH~~~~~~~Di~~Ry~rm~G~~V~~~~G 135 (809)
+++|.+.+| --||| .+||||... ...+..+++..|..+..+.+
T Consensus 71 ~~~~~vYtG-~~PSg~~lHlGHlv~---~~~~~~lQ~~~~~~~~I~ia 114 (383)
T PLN02486 71 GEKFYLYTG-RGPSSEALHLGHLIP---FMFTKYLQDAFKVPLVIQLT 114 (383)
T ss_pred CCCeEEEeC-CCCCCccccHHHHHH---HHHHHHHHHhCCCeEEEEec
Confidence 578999999 79999 599999554 33444555566766666644
No 143
>PRK13354 tyrosyl-tRNA synthetase; Provisional
Probab=84.94 E-value=1.2 Score=50.39 Aligned_cols=45 Identities=22% Similarity=0.320 Sum_probs=31.9
Q ss_pred CCCEEEeCCCCCCCC-CCcchhhHHHHHHHHHHHHHHHCCCcccccCCCCC
Q 003578 89 SDPFVISMPPPNVTG-SLHMGHAMFVTLEDIMVRYHRMKGRPTLWLPGTDH 138 (809)
Q Consensus 89 ~~~f~i~~~pPy~nG-~lHiGH~~~~~~~Di~~Ry~rm~G~~V~~~~G~D~ 138 (809)
++++.+..| --||| +|||||+... -.+ |+....|+++.++.|--+
T Consensus 31 ~~~~~iy~G-~dPT~~sLHlGhlv~l---~~l-~~lq~~G~~~~~ligd~t 76 (410)
T PRK13354 31 GKPLTLYLG-FDPTAPSLHIGHLVPL---MKL-KRFQDAGHRPVILIGGFT 76 (410)
T ss_pred CCCcEEEEc-ccCCCCCcchhhHHHH---HHH-HHHHHcCCeEEEEEcccc
Confidence 456788888 68999 5999995442 224 444557999999887655
No 144
>cd00805 TyrRS_core catalytic core domain of tyrosinyl-tRNA synthetase. Tyrosinyl-tRNA synthetase (TyrRS) catalytic core domain. TyrRS is a homodimer which attaches Tyr to the appropriate tRNA. TyrRS is a class I tRNA synthetases, so it aminoacylates the 2'-OH of the nucleotide at the 3' end of the tRNA. The core domain is based on the Rossman fold and is responsible for the ATP-dependent formationof the enzyme bound aminoacyl-adenylate. It contains the class I characteristic HIGH and KMSKS motifs, which are involved in ATP binding.
Probab=84.44 E-value=0.74 Score=49.08 Aligned_cols=73 Identities=22% Similarity=0.251 Sum_probs=43.5
Q ss_pred CCCCC-CCcchhhHHHHHHHHHHHHHHHCCCcccccCCCCCCCCchHHHHHHHHHHcCC--CccccCHHHHHHHHHHHHH
Q 003578 99 PNVTG-SLHMGHAMFVTLEDIMVRYHRMKGRPTLWLPGTDHAGIATQLVVEKMLAAEGI--KRVELSRDEFTKRVWEWKE 175 (809)
Q Consensus 99 Py~nG-~lHiGH~~~~~~~Di~~Ry~rm~G~~V~~~~G~D~~Gl~~~~~~e~~~~~~g~--~~~~~~~~~f~~~~~~~~~ 175 (809)
--||| .+||||..+. -.+.|++++ |++|.++.|-.|.=+- ...|+ .+...+.++. .
T Consensus 7 ~~PTg~~lHLG~~~~~---~~~~~lq~~-g~~~~ilI~D~~a~~~---------~~~~~~~~r~~~~~~~i--------~ 65 (269)
T cd00805 7 FDPTAPSLHLGHLVPL---MKLRDFQQA-GHEVIVLIGDATAMIG---------DPSGKSEERKLLDLELI--------R 65 (269)
T ss_pred eCCCCCcccHHHHHHH---HHHHHHHHC-CCeEEEEECCCeeecC---------CCCCccccccCCCHHHH--------H
Confidence 35799 8999997752 367777775 9998888775443210 00111 1111222222 3
Q ss_pred HHHHHHHHHHHHhcccc
Q 003578 176 KYGGTITSQIKRLGASC 192 (809)
Q Consensus 176 ~~~~~~~~~l~~lgi~~ 192 (809)
++...+..++..+|...
T Consensus 66 ~~~~~~~~~~~a~g~~~ 82 (269)
T cd00805 66 ENAKYYKKQLKAILDFI 82 (269)
T ss_pred HHHHHHHHHHHHHHccC
Confidence 45566788899998753
No 145
>PRK08560 tyrosyl-tRNA synthetase; Validated
Probab=82.30 E-value=2.1 Score=47.13 Aligned_cols=44 Identities=16% Similarity=0.242 Sum_probs=29.7
Q ss_pred CCEEEeCCCCCCCCCCcchhhHHHHHHHHHHHHHHHCCCcccccCCCCC
Q 003578 90 DPFVISMPPPNVTGSLHMGHAMFVTLEDIMVRYHRMKGRPTLWLPGTDH 138 (809)
Q Consensus 90 ~~f~i~~~pPy~nG~lHiGH~~~~~~~Di~~Ry~rm~G~~V~~~~G~D~ 138 (809)
+++.+.+| --|||.+||||.. .+ -.++++++ .|++|.+..+=.|
T Consensus 29 ~~~~v~~G-~~PTG~lHLG~~~-~~--~~~~~lq~-~g~~~~i~IaD~h 72 (329)
T PRK08560 29 EEPKAYIG-FEPSGKIHLGHLL-TM--NKLADLQK-AGFKVTVLLADWH 72 (329)
T ss_pred CCCEEEEc-cCCCCcchhhhhH-HH--HHHHHHHH-CCCeEEEEEccch
Confidence 45556677 5889999999954 22 23666666 4888877665444
No 146
>PLN02486 aminoacyl-tRNA ligase
Probab=78.85 E-value=2.1 Score=47.90 Aligned_cols=65 Identities=22% Similarity=0.160 Sum_probs=38.5
Q ss_pred cEEEeeehhHH-hHHHHHHHHHHHhcCCCCceeEEEeeeEEccCC--CcccccccC-ccChhhHHHhhCCchHHHHHh
Q 003578 541 TMLETGHDILF-FWVARMVMMGIEFTGSVPFSHVYLHGLIRDSQG--RKMSKTLGN-VIDPIDTIKEFGADALRFTIS 614 (809)
Q Consensus 541 d~~~~G~Di~~-~w~~~~~~~~~~l~~~~Pf~~v~~hg~vld~~G--~KMSKS~GN-~I~p~dli~~ygaD~lR~~ll 614 (809)
.+.-.|.||.. +=++|-++-. +....| .+..|.++....| .|||||.+| +|.+.| .++.++=.+.
T Consensus 221 ~lVPvG~DQd~~~~ltRdia~r--~~~~kp--~~~~~~~lp~L~g~~~KMSkS~~nsaI~L~D-----~p~~i~~KI~ 289 (383)
T PLN02486 221 CLIPCAIDQDPYFRMTRDVAPR--LGYYKP--ALIESRFFPALQGESGKMSASDPNSAIYVTD-----TPKEIKNKIN 289 (383)
T ss_pred ceeecccchHHHHHHHHHHHHH--hCCCCc--ceeccccccCCCCCCCcCcCcCCCCeeeccC-----CHHHHHHHHh
Confidence 35557999864 3444444433 333345 2334566666666 799999988 688776 4444544443
No 147
>PRK05912 tyrosyl-tRNA synthetase; Validated
Probab=78.62 E-value=3.7 Score=46.46 Aligned_cols=42 Identities=26% Similarity=0.403 Sum_probs=30.2
Q ss_pred CCEEEeCCCCCCCCC-CcchhhHHHHHHHHHHHHHHHCCCcccccCCC
Q 003578 90 DPFVISMPPPNVTGS-LHMGHAMFVTLEDIMVRYHRMKGRPTLWLPGT 136 (809)
Q Consensus 90 ~~f~i~~~pPy~nG~-lHiGH~~~~~~~Di~~Ry~rm~G~~V~~~~G~ 136 (809)
+++.+.+| --|||+ |||||... -..+.++++ .|+++.++.|-
T Consensus 32 ~~~~vy~G-~dPTg~slHlGhlv~---l~~l~~lQ~-~G~~~~~ligd 74 (408)
T PRK05912 32 EPLRIYLG-FDPTAPSLHLGHLVP---LLKLRRFQD-AGHKPIALIGG 74 (408)
T ss_pred CCCEEEEe-ecCCCCCccHHhHHH---HHHHHHHHH-CCCcEEEEEcC
Confidence 45777777 688995 99999773 234555554 69998887653
No 148
>TIGR00233 trpS tryptophanyl-tRNA synthetase. This model represents tryptophanyl-tRNA synthetase. Some members of the family have a pfam00458 domain amino-terminal to the region described by this model.
Probab=76.50 E-value=5 Score=44.10 Aligned_cols=58 Identities=21% Similarity=0.177 Sum_probs=35.3
Q ss_pred CcEEEeeehhHH-hHHHHHHHHHHHhc----CCCCceeEEEeee---EEccCCCcccccccC-ccChhh
Q 003578 540 TTMLETGHDILF-FWVARMVMMGIEFT----GSVPFSHVYLHGL---IRDSQGRKMSKTLGN-VIDPID 599 (809)
Q Consensus 540 ~d~~~~G~Di~~-~w~~~~~~~~~~l~----~~~Pf~~v~~hg~---vld~~G~KMSKS~GN-~I~p~d 599 (809)
+|+...|.||.. +=++|-++-.+.-. -..| ..+.|.+ +...+|+|||||.+| .|.+.|
T Consensus 140 ~d~vpvG~DQ~~h~elaRdia~r~n~~~~~~f~~P--~~l~~~~~~~l~gl~~~KMSKS~~~s~I~L~D 206 (328)
T TIGR00233 140 ADLVPVGIDQDQHLELTRDLAERFNKKFKNFFPKP--ESLISKFFPRLMGLSGKKMSKSDPNSAIFLTD 206 (328)
T ss_pred CCeeecccccHHHHHHHHHHHHHhhhhcCcccCCC--hhhhccccCCCCCCCCCcCCCCCCCCeEeecC
Confidence 567788999874 45555555433211 1234 3344444 345567899999997 777655
No 149
>PRK12284 tryptophanyl-tRNA synthetase; Reviewed
Probab=74.71 E-value=5.9 Score=44.75 Aligned_cols=103 Identities=12% Similarity=0.089 Sum_probs=56.9
Q ss_pred EeCCCCCCCCCCcchhhHHHHHHHHHHHHHHHCCCcccccCCCCCCCCchHHHHHHHHHHcCCCccccCHHHHHHHHHHH
Q 003578 94 ISMPPPNVTGSLHMGHAMFVTLEDIMVRYHRMKGRPTLWLPGTDHAGIATQLVVEKMLAAEGIKRVELSRDEFTKRVWEW 173 (809)
Q Consensus 94 i~~~pPy~nG~lHiGH~~~~~~~Di~~Ry~rm~G~~V~~~~G~D~~Gl~~~~~~e~~~~~~g~~~~~~~~~~f~~~~~~~ 173 (809)
|.++ --|||.|||||..+.+-. ..+.+...|++++|... |-|.+- ...++.+ ..
T Consensus 5 vlSG-iqPTG~lHLGNylGaik~--~v~lq~q~~~~~~~~IA-DlHAlT-----------~~~dp~~-----lr------ 58 (431)
T PRK12284 5 VLTG-ITTTGTPHLGNYAGAIRP--AIAASRQPGVESFYFLA-DYHALI-----------KCDDPAR-----IQ------ 58 (431)
T ss_pred EEEE-ecCCCcchHHHHHHHHHH--HHHHHHhCCCcEEEEee-chhhcc-----------CCCCHHH-----HH------
Confidence 4455 368999999997776542 34455556888766543 334321 0112221 11
Q ss_pred HHHHHHHHHHHHHHhcccccCCCccc-cCChhhHHHHHHHHHHHHHcCceeec
Q 003578 174 KEKYGGTITSQIKRLGASCDWTRERF-TLDEQLSRAVVEAFIRLHEKGLIYQG 225 (809)
Q Consensus 174 ~~~~~~~~~~~l~~lgi~~Dw~~~~~-T~d~~~~~~v~~~f~~L~~~Gliy~~ 225 (809)
++...+...+...|+.-+=..-|. +.-|++.+ ..|++..+-..|.+-|-
T Consensus 59 --~~~~e~aa~~LA~GlDPek~~if~QSdvpeh~E-L~wiL~~it~~g~L~Rm 108 (431)
T PRK12284 59 --RSTLEIAATWLAAGLDPERVTFYRQSDIPEIPE-LTWLLTCVAGKGLLNRA 108 (431)
T ss_pred --HHHHHHHHHHHHhCCCccceEEEECCcchhHHH-HHHHHHhhhhHHHHHhh
Confidence 233345667788887655222222 33455543 57777777666666543
No 150
>PF01927 Mut7-C: Mut7-C RNAse domain; InterPro: IPR002782 This prokaryotic family of proteins have no known function. The proteins contain four conserved cysteines that may be involved in metal binding or disulphide bridges.
Probab=73.82 E-value=3.1 Score=40.01 Aligned_cols=21 Identities=29% Similarity=0.496 Sum_probs=18.4
Q ss_pred HHHHHHHCCCcccccCCCCCC
Q 003578 119 MVRYHRMKGRPTLWLPGTDHA 139 (809)
Q Consensus 119 ~~Ry~rm~G~~V~~~~G~D~~ 139 (809)
++||+|+.||+|.+..+.++.
T Consensus 12 Lar~LR~lG~Dt~~~~~~~D~ 32 (147)
T PF01927_consen 12 LARWLRLLGYDTLYSRDIDDD 32 (147)
T ss_pred HHHHHHHCCCcEEEeCCCChH
Confidence 689999999999999987554
No 151
>PTZ00348 tyrosyl-tRNA synthetase; Provisional
Probab=73.50 E-value=3.4 Score=49.52 Aligned_cols=59 Identities=24% Similarity=0.143 Sum_probs=34.8
Q ss_pred CCCcEEEeeehhHH-hHHHHHHHHHHHhcCCCCceeEEEeeeEEccC-C-Ccccccc-cCccChhh
Q 003578 538 YPTTMLETGHDILF-FWVARMVMMGIEFTGSVPFSHVYLHGLIRDSQ-G-RKMSKTL-GNVIDPID 599 (809)
Q Consensus 538 ~p~d~~~~G~Di~~-~w~~~~~~~~~~l~~~~Pf~~v~~hg~vld~~-G-~KMSKS~-GN~I~p~d 599 (809)
+.+|+...|.||.. +=++|-++-.+ +..|-..+..|.++...+ | .|||||. +|.|...|
T Consensus 174 l~adivpvG~DQ~qh~eLaRdia~~~---g~~~kpvil~~~~LpGL~gg~~KMSKS~p~naI~L~D 236 (682)
T PTZ00348 174 LKADICQLGLDQRKVNMLAREYCDLI---GRKLKPVILSHHMLAGLKQGQAKMSKSDPDSAIFMED 236 (682)
T ss_pred cCCCEEEeCccHHHHHHHHHHHHHHh---CCCCCceecccccCcCCCCCCCcCCCCCCCCeecccC
Confidence 45788889999964 34444443322 222211233455565564 3 6999999 68887654
No 152
>PRK00927 tryptophanyl-tRNA synthetase; Reviewed
Probab=67.76 E-value=4 Score=44.97 Aligned_cols=33 Identities=18% Similarity=0.223 Sum_probs=23.3
Q ss_pred CCCCCCCcchhhHHHHHHHHHHHHHHHCCCcccccCC
Q 003578 99 PNVTGSLHMGHAMFVTLEDIMVRYHRMKGRPTLWLPG 135 (809)
Q Consensus 99 Py~nG~lHiGH~~~~~~~Di~~Ry~rm~G~~V~~~~G 135 (809)
--|||.+||||..+.+.. +.+++. +++|.+..+
T Consensus 8 ~~PTG~lHLG~~~g~~~~--~~~lQ~--~~~~~~~Ia 40 (333)
T PRK00927 8 IQPTGKLHLGNYLGAIKN--WVELQD--EYECFFCIA 40 (333)
T ss_pred eCCCccchHHhHHHHHHH--HHHHHh--cCCeEEEEe
Confidence 368999999999887533 555555 377777664
No 153
>PLN02886 aminoacyl-tRNA ligase
Probab=67.32 E-value=7 Score=43.69 Aligned_cols=36 Identities=19% Similarity=0.225 Sum_probs=23.5
Q ss_pred EeCCCCCCCCCCcchhhHHHHHHHHHHHHHHHCCCcccccC
Q 003578 94 ISMPPPNVTGSLHMGHAMFVTLEDIMVRYHRMKGRPTLWLP 134 (809)
Q Consensus 94 i~~~pPy~nG~lHiGH~~~~~~~Di~~Ry~rm~G~~V~~~~ 134 (809)
+.++ --|||.+||||.++.+ .-++++++ |+++++..
T Consensus 49 v~sG-iqPSG~lHLGnylGai--~~~v~lQ~--~~~~~~~I 84 (389)
T PLN02886 49 VVSG-VQPTGSIHLGNYLGAI--KNWVALQE--TYDTFFCV 84 (389)
T ss_pred EEEE-ECCCCccHHHHHHHHH--HHHHHHhc--cCCEEEEE
Confidence 4444 3678999999988766 23444544 77775543
No 154
>smart00836 DALR_1 DALR anticodon binding domain. This all alpha helical domain is the anticodon binding domain of Arginyl tRNA synthetase. This domain is known as the DALR domain after characteristic conserved amino acids PUBMED:10447505.
Probab=67.25 E-value=44 Score=30.56 Aligned_cols=78 Identities=19% Similarity=0.219 Sum_probs=51.6
Q ss_pred chhHHHHHHHHHHHHHHHHHhhcCChHHHHHHHHHHHHHhhHHHHHHHhhhhhhcCCCcH---HHHHHHHHHHHHHHHHH
Q 003578 678 LPECWVVSKLHMLIDTVTASYDKYFFGDVGRETYDFFWSDFADWYIEASKARLYRSEYDS---DAIIAQAVLLYIFENIL 754 (809)
Q Consensus 678 ~~d~~il~~l~~~~~~v~~a~e~~~f~~a~~~i~~f~~~~~~n~Yi~~~k~~l~~~~~~~---~~~~~~~~l~~vl~~l~ 754 (809)
+.++.++..+..+.+.+..++.+.+++.++..+.++. ..+.++| + +.++.++++.+ .|......+..++..++
T Consensus 36 ~~E~~L~~~i~~~~~~i~~~~~~~~~~~l~~~l~~L~-~~~~~fy-~--~v~V~~~~~~~~~~~RL~Ll~~~~~~l~~~~ 111 (122)
T smart00836 36 PEELALLRLLARFPEVLEAAAETLEPHRLANYLYDLA-SAFHSFY-N--KCRVLGEENPELRAARLALLKAVRQVLANGL 111 (122)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHCCcHHHHHHHHHHH-HHHHHHH-c--cCcccCCCCHHHHHHHHHHHHHHHHHHHHHH
Confidence 4566788888888888899999999999999999987 4555555 3 33444443222 23334444555555566
Q ss_pred HHhcc
Q 003578 755 KLLHP 759 (809)
Q Consensus 755 ~lL~P 759 (809)
.+|..
T Consensus 112 ~llgi 116 (122)
T smart00836 112 RLLGI 116 (122)
T ss_pred HHcCC
Confidence 66543
No 155
>TIGR00234 tyrS tyrosyl-tRNA synthetase. This tyrosyl-tRNA synthetase model starts picking up tryptophanyl-tRNA synthetases at scores of 0 and below. The proteins found by this model have a deep split between two groups. One group contains bacterial and organellar eukaryotic examples. The other contains archaeal and cytosolic eukaryotic examples.
Probab=63.60 E-value=5.6 Score=44.60 Aligned_cols=41 Identities=22% Similarity=0.307 Sum_probs=29.7
Q ss_pred CEEEeCCCCCCCC-CCcchhhHHHHHHHHHHHHHHHCCCcccccCCC
Q 003578 91 PFVISMPPPNVTG-SLHMGHAMFVTLEDIMVRYHRMKGRPTLWLPGT 136 (809)
Q Consensus 91 ~f~i~~~pPy~nG-~lHiGH~~~~~~~Di~~Ry~rm~G~~V~~~~G~ 136 (809)
++.+.+| --||| .|||||... --.+.|+++ .|++|.++.|-
T Consensus 30 ~~~vy~G-~dPTg~~lHlGh~v~---l~~l~~lq~-~G~~~~iligd 71 (377)
T TIGR00234 30 KIKLYVG-FDPTAPSLHLGHLVP---LLKLRDFQQ-AGHEVIVLLGD 71 (377)
T ss_pred CCEEEEe-eCCCCCCccHHHHHH---HHHHHHHHH-CCCcEEEEEec
Confidence 5667777 58899 899999774 233555655 69999888753
No 156
>PLN02886 aminoacyl-tRNA ligase
Probab=63.01 E-value=5.9 Score=44.29 Aligned_cols=41 Identities=2% Similarity=-0.194 Sum_probs=20.5
Q ss_pred HHHHHHHHHHHhcccccCCCccc-cCChhhHHHHHHHHHHHHH
Q 003578 177 YGGTITSQIKRLGASCDWTRERF-TLDEQLSRAVVEAFIRLHE 218 (809)
Q Consensus 177 ~~~~~~~~l~~lgi~~Dw~~~~~-T~d~~~~~~v~~~f~~L~~ 218 (809)
+...+...+..+|+.-+=..-|. +.-+++.+ ..|++..+..
T Consensus 102 ~~~~~~a~~lA~GlDP~ks~if~QS~v~e~~e-L~wil~~~t~ 143 (389)
T PLN02886 102 ATRSTAAIYLACGIDPSKASVFVQSHVPAHAE-LMWLLSCSTP 143 (389)
T ss_pred HHHHHHHHHHHcCcCccceEEEEeCCCchhHH-HHHHHHhhCc
Confidence 33445667888887665222122 33455533 3455555433
No 157
>PF00579 tRNA-synt_1b: tRNA synthetases class I (W and Y); InterPro: IPR002305 The aminoacyl-tRNA synthetases (6.1.1. from EC) catalyse the attachment of an amino acid to its cognate transfer RNA molecule in a highly specific two-step reaction. These proteins differ widely in size and oligomeric state, and have limited sequence homology []. The 20 aminoacyl-tRNA synthetases are divided into two classes, I and II. Class I aminoacyl-tRNA synthetases contain a characteristic Rossman fold catalytic domain and are mostly monomeric []. Class II aminoacyl-tRNA synthetases share an anti-parallel beta-sheet fold flanked by alpha-helices [], and are mostly dimeric or multimeric, containing at least three conserved regions [, , ]. However, tRNA binding involves an alpha-helical structure that is conserved between class I and class II synthetases. In reactions catalysed by the class I aminoacyl-tRNA synthetases, the aminoacyl group is coupled to the 2'-hydroxyl of the tRNA, while, in class II reactions, the 3'-hydroxyl site is preferred. The synthetases specific for arginine, cysteine, glutamic acid, glutamine, isoleucine, leucine, methionine, tyrosine, tryptophan and valine belong to class I synthetases. The synthetases specific for alanine, asparagine, aspartic acid, glycine, histidine, lysine, phenylalanine, proline, serine, and threonine belong to class-II synthetases []. Based on their mode of binding to the tRNA acceptor stem, both classes of tRNA synthetases have been subdivided into three subclasses, designated 1a, 1b, 1c and 2a, 2b, 2c. The class Ia aminoacyl-tRNA synthetases consist of the isoleucyl, methionyl, valyl, leucyl, cysteinyl, and arginyl-tRNA synthetases; the class Ib include the glutamyl and glutaminyl-tRNA synthetases, and the class Ic are the tyrosyl and tryptophanyl-tRNA synthetases [].; GO: 0000166 nucleotide binding, 0004812 aminoacyl-tRNA ligase activity, 0005524 ATP binding, 0006418 tRNA aminoacylation for protein translation, 0005737 cytoplasm; PDB: 2JAN_A 3P0J_B 3P0I_B 3P0H_B 1YID_C 2A4M_C 1YIA_C 1YI8_C 2EL7_A 3PRH_A ....
Probab=61.98 E-value=3.9 Score=44.10 Aligned_cols=45 Identities=24% Similarity=0.433 Sum_probs=31.2
Q ss_pred CCCEEEeCCCCCCCCCCcchhhHHHHHHHHHHHHHHHCCCcccccCCCCC
Q 003578 89 SDPFVISMPPPNVTGSLHMGHAMFVTLEDIMVRYHRMKGRPTLWLPGTDH 138 (809)
Q Consensus 89 ~~~f~i~~~pPy~nG~lHiGH~~~~~~~Di~~Ry~rm~G~~V~~~~G~D~ 138 (809)
++++.+.+| --|||.|||||+.... .+.++++ .|++|.++.|-++
T Consensus 3 ~~~~~~y~G-~~PTg~lHlG~l~~~~---~~~~lq~-~g~~~~i~iaD~~ 47 (292)
T PF00579_consen 3 NKPFRVYTG-IDPTGDLHLGHLVPIM---KLIWLQK-AGFKVIILIADLH 47 (292)
T ss_dssp HSSEEEEEE-EESSSS-BHHHHHHHH---HHHHHHH-TTSEEEEEEEHHH
T ss_pred CCCcEEEEe-ECCCCcccchHHHHHH---HHHHHHh-cCCccceEecchh
Confidence 456777777 5889999999877643 3444555 8999999876433
No 158
>PTZ00126 tyrosyl-tRNA synthetase; Provisional
Probab=58.04 E-value=13 Score=41.79 Aligned_cols=43 Identities=7% Similarity=0.053 Sum_probs=26.6
Q ss_pred CCEEEeCCCCCCCCCCcchhhHHHHHHHHHHHHHHHCCCcccccCCC
Q 003578 90 DPFVISMPPPNVTGSLHMGHAMFVTLEDIMVRYHRMKGRPTLWLPGT 136 (809)
Q Consensus 90 ~~f~i~~~pPy~nG~lHiGH~~~~~~~Di~~Ry~rm~G~~V~~~~G~ 136 (809)
+++.+..+ -=|||.+||||.. +..--+..++ -.|++|.+..|-
T Consensus 65 ~~~~v~~G-~~PTG~lHLG~g~--i~~~~~~~lq-~~G~~v~~~IaD 107 (383)
T PTZ00126 65 ERPICYDG-FEPSGRMHIAQGI--LKAINVNKLT-KAGCVFVFWVAD 107 (383)
T ss_pred CCCEEEEE-ECCCCcccccchH--hHhHHHHHHH-hCCCeEEEEEcc
Confidence 45666666 5789999999932 1111233333 448888887653
No 159
>PRK12556 tryptophanyl-tRNA synthetase; Provisional
Probab=57.87 E-value=12 Score=41.19 Aligned_cols=38 Identities=13% Similarity=0.106 Sum_probs=23.4
Q ss_pred eCCCCCCCCCCcchhhHHHHHHHHHHHHHHHCCCcccccCC
Q 003578 95 SMPPPNVTGSLHMGHAMFVTLEDIMVRYHRMKGRPTLWLPG 135 (809)
Q Consensus 95 ~~~pPy~nG~lHiGH~~~~~~~Di~~Ry~rm~G~~V~~~~G 135 (809)
.+| --|||.+||||..+.+-. ..+.+...|.++.+...
T Consensus 7 ~sG-iqPTG~~HLGnylga~k~--~~~lq~~~~~~~~~~IA 44 (332)
T PRK12556 7 LTG-IKPTGYPHLGNYIGAIKP--ALQMAKNYEGKALYFIA 44 (332)
T ss_pred EEE-ECCCCcchHHHHHHHHHH--HHHHHHhcCCeEEEEEe
Confidence 344 367899999997775432 23344445666666544
No 160
>PLN02859 glutamine-tRNA ligase
Probab=56.57 E-value=20 Score=43.55 Aligned_cols=59 Identities=15% Similarity=0.004 Sum_probs=44.6
Q ss_pred EEccCCCcccccccCc---------------cChhhHHHh-hCCchHHHHHhhCCC-CCcc-cccHHHHHH-HHHHHH
Q 003578 579 IRDSQGRKMSKTLGNV---------------IDPIDTIKE-FGADALRFTISLGTA-GQDL-SLSIERLTA-NKAFTN 637 (809)
Q Consensus 579 vld~~G~KMSKS~GN~---------------I~p~dli~~-ygaD~lR~~ll~~~~-~~d~-~fs~~~l~~-~~~~~~ 637 (809)
.++.+|.||||+++.. .++..+... |-++++|=|++..+. ..+. .++++.|+. +++.++
T Consensus 492 rLn~~~t~LSKRkl~~lV~~g~V~GWDDPRl~Tl~glRrrG~~PeAi~nFi~~lG~s~~~~e~i~~~~Le~~~r~~l~ 569 (788)
T PLN02859 492 RLNVTNTVMSKRKLNRLVTEKYVDGWDDPRLLTLAGLRRRGVTPTAINAFCRGIGITRSDNSLIRMDRLEHHIREELN 569 (788)
T ss_pred eECCCCCcccCcCchhccccCcccCCCCCcchhHHHHHHCCCCHHHHHHHHHHhCCCCCCCceecHHHHHhhCHHhhC
Confidence 6689999999999764 245556655 889999999998777 5666 799998865 444444
No 161
>COG0008 GlnS Glutamyl- and glutaminyl-tRNA synthetases [Translation, ribosomal structure and biogenesis]
Probab=55.57 E-value=16 Score=42.07 Aligned_cols=60 Identities=18% Similarity=0.075 Sum_probs=39.8
Q ss_pred eeEEEeeeEEccCCCcccccccCccChhhHHH-hhCCchHHHHHhhCCC----CCcccccHHHHHH
Q 003578 571 SHVYLHGLIRDSQGRKMSKTLGNVIDPIDTIK-EFGADALRFTISLGTA----GQDLSLSIERLTA 631 (809)
Q Consensus 571 ~~v~~hg~vld~~G~KMSKS~GN~I~p~dli~-~ygaD~lR~~ll~~~~----~~d~~fs~~~l~~ 631 (809)
-.++=++++++.+|+|||||+| .+...+... .|-..+++-+++.... ...-.|+.+.+..
T Consensus 235 P~~~H~~li~~~~g~kLSKr~~-~~~~~~~~~~G~~~~al~~~~allg~~~~~~~~e~f~~~~~~~ 299 (472)
T COG0008 235 PVYAHLPLLLNEDGKKLSKRKG-AVSIGEYRVEGWLPPALPNLLALLGRGYPPEAIEIFSLEEGIK 299 (472)
T ss_pred CcEEEeeeeecCCCCeecCccC-ccccchhhhcCCCcHHHHHHHHHhcCCCChhhHHHHHHHHHHh
Confidence 3677788888888899999999 677666443 3667777767654322 3344555555443
No 162
>COG0162 TyrS Tyrosyl-tRNA synthetase [Translation, ribosomal structure and biogenesis]
Probab=55.40 E-value=23 Score=39.84 Aligned_cols=41 Identities=27% Similarity=0.416 Sum_probs=28.0
Q ss_pred CEEEeCCCCCCCC-CCcchhhHHHHHHHHHHHHHHHCCCcccccCCC
Q 003578 91 PFVISMPPPNVTG-SLHMGHAMFVTLEDIMVRYHRMKGRPTLWLPGT 136 (809)
Q Consensus 91 ~f~i~~~pPy~nG-~lHiGH~~~~~~~Di~~Ry~rm~G~~V~~~~G~ 136 (809)
+..+..| -=||| +|||||..... .++| ....||+|..+.|-
T Consensus 32 ~~~~Y~G-fDPTa~slHlGhlv~l~---kL~~-fQ~aGh~~ivLigd 73 (401)
T COG0162 32 PLRVYIG-FDPTAPSLHLGHLVPLM---KLRR-FQDAGHKPIVLIGD 73 (401)
T ss_pred CceEEEe-eCCCCCccchhhHHHHH---HHHH-HHHCCCeEEEEecc
Confidence 4444455 45799 79999987642 2333 35679999998874
No 163
>COG0180 TrpS Tryptophanyl-tRNA synthetase [Translation, ribosomal structure and biogenesis]
Probab=53.76 E-value=33 Score=37.19 Aligned_cols=46 Identities=15% Similarity=0.150 Sum_probs=31.6
Q ss_pred CCEEEeCCCCCCCCCCcchhhHHHHHHHHHHHHHHHCCC-cccccCCCCCCCC
Q 003578 90 DPFVISMPPPNVTGSLHMGHAMFVTLEDIMVRYHRMKGR-PTLWLPGTDHAGI 141 (809)
Q Consensus 90 ~~f~i~~~pPy~nG~lHiGH~~~~~~~Di~~Ry~rm~G~-~V~~~~G~D~~Gl 141 (809)
.++.|.+| =-|||.|||||..+.+. .+++...++ ++++.. .|-|.+
T Consensus 4 ~~~~vlSG-~~PSG~lHLGny~ga~~----~~v~~q~~~~~~f~~I-aDlha~ 50 (314)
T COG0180 4 KKFRVLSG-IQPSGKLHLGNYLGAIR----NWVLLQEEYYECFFFI-ADLHAI 50 (314)
T ss_pred CCceEEec-CCCCCCcchhHhHHHHH----HHHHHhcccCceEEEE-ecHHHh
Confidence 45667777 58999999999998764 466666664 665544 455443
No 164
>KOG2623 consensus Tyrosyl-tRNA synthetase [Translation, ribosomal structure and biogenesis]
Probab=52.24 E-value=13 Score=40.80 Aligned_cols=60 Identities=20% Similarity=0.122 Sum_probs=35.4
Q ss_pred CCCcEEEeeehhHHhHHHHHHHHHHHhcC-CCCceeEEEeeeEEccCCCcccccccCccChhh
Q 003578 538 YPTTMLETGHDILFFWVARMVMMGIEFTG-SVPFSHVYLHGLIRDSQGRKMSKTLGNVIDPID 599 (809)
Q Consensus 538 ~p~d~~~~G~Di~~~w~~~~~~~~~~l~~-~~Pf~~v~~hg~vld~~G~KMSKS~GN~I~p~d 599 (809)
+.+.+.+.|.||.-.--+-.-++...... ..+| =++--.+.+..|.|+-||-||+||.+-
T Consensus 226 ~g~~~QlGGsDQwGNitaG~dlI~ki~~~~~~vf--GlT~PLlTsstG~KlGKSaGnAvWLdp 286 (467)
T KOG2623|consen 226 YGCRFQLGGSDQWGNITAGTDLIRKIMPIQAFVF--GLTFPLLTSSTGAKLGKSAGNAVWLDP 286 (467)
T ss_pred cCeeEEecccccccccchHHHHHHHhccccccee--eeeeeeEecCcchhhccCCCceEEecC
Confidence 45778899999874311111111111111 1122 134455678999999999999999754
No 165
>PRK12283 tryptophanyl-tRNA synthetase; Reviewed
Probab=45.88 E-value=42 Score=37.73 Aligned_cols=31 Identities=23% Similarity=0.344 Sum_probs=20.7
Q ss_pred CCCCCCCcchhhHHHHHHHHHHHHHH-HCCCcccccC
Q 003578 99 PNVTGSLHMGHAMFVTLEDIMVRYHR-MKGRPTLWLP 134 (809)
Q Consensus 99 Py~nG~lHiGH~~~~~~~Di~~Ry~r-m~G~~V~~~~ 134 (809)
--|||.+||||.++.+ + .|.. ..|+++.+..
T Consensus 9 iqPSG~~HLGnylG~i-k----~wv~lq~~~~~~~~I 40 (398)
T PRK12283 9 MRPTGRLHLGHYHGVL-K----NWVKLQHEYECFFFV 40 (398)
T ss_pred eCCCCcchHHHHHHHH-H----HHHHHhcCCcEEEEe
Confidence 3689999999999844 2 3333 3577765443
No 166
>PRK05710 glutamyl-Q tRNA(Asp) synthetase; Reviewed
Probab=37.91 E-value=59 Score=35.17 Aligned_cols=42 Identities=17% Similarity=0.052 Sum_probs=27.8
Q ss_pred eEEEeeeEEccCCCcccccccCccChhhHHHhhCCchHHHHHhhCC
Q 003578 572 HVYLHGLIRDSQGRKMSKTLGNVIDPIDTIKEFGADALRFTISLGT 617 (809)
Q Consensus 572 ~v~~hg~vld~~G~KMSKS~GN~I~p~dli~~ygaD~lR~~ll~~~ 617 (809)
.+.-++.+++.+|+||||+.|.. .+.+ +.+-++ +..++....
T Consensus 222 ~y~H~pll~~~~g~kLSKr~~~~-~i~~--~g~~p~-l~~~l~~lG 263 (299)
T PRK05710 222 RYLHLPLVLNADGQKLSKQNGAP-ALDA--AGPLPV-LAAALRFLG 263 (299)
T ss_pred eEEEeecccCCCCCcccccCCcc-chhh--cCcCHH-HHHHHHHcC
Confidence 55555788899999999998753 3444 445566 555555443
No 167
>PTZ00348 tyrosyl-tRNA synthetase; Provisional
Probab=30.62 E-value=43 Score=40.44 Aligned_cols=40 Identities=8% Similarity=0.041 Sum_probs=24.9
Q ss_pred CCEEEeCCCCCCCCCCcchhhHHHHHHHHHHHH-HHHCCCcccccC
Q 003578 90 DPFVISMPPPNVTGSLHMGHAMFVTLEDIMVRY-HRMKGRPTLWLP 134 (809)
Q Consensus 90 ~~f~i~~~pPy~nG~lHiGH~~~~~~~Di~~Ry-~rm~G~~V~~~~ 134 (809)
+++.+.+| -=|||.|||||. +++ .+..+ .+..|++|.+..
T Consensus 31 ~~~rv~sG-i~PTG~lHLGng---~~~-aik~~~~~q~g~~~~~lI 71 (682)
T PTZ00348 31 PLIRCYDG-FEPSGRMHIAQG---IFK-AVNVNKCTQAGCEFVFWV 71 (682)
T ss_pred CCCEEEEe-eCCCCcCeeccH---HHH-HHHHHHHHhCCCeEEEEE
Confidence 45677777 588999999993 222 12111 124688876654
No 168
>PF09236 AHSP: Alpha-haemoglobin stabilising protein; InterPro: IPR015317 Alpha-haemoglobin stabilising protein (AHSP) acts a molecular chaperone for free alpha-haemoglobin, preventing the harmful aggregation of alpha-haemoglobin during normal erythroid cell development: it specifically protects free alpha-haemoglobin from precipitation. AHSP adopts a helical secondary structure consisting of an elongated antiparallel three alpha-helix bundle []. ; GO: 0030492 hemoglobin binding, 0006457 protein folding, 0020027 hemoglobin metabolic process, 0030097 hemopoiesis, 0050821 protein stabilization; PDB: 1Y01_A 1XZY_A 3OVU_A 1W0A_A 3IA3_C 1Z8U_A 1W0B_A 1W09_A.
Probab=29.91 E-value=3.6e+02 Score=23.21 Aligned_cols=68 Identities=15% Similarity=0.172 Sum_probs=37.0
Q ss_pred HHHHHHHHHhhc--CChHHHHHHHHHHHHHhhHHHHHHHhhhhhhcCCCcHHHHHHHHHHHHHHHHHHHHhccch
Q 003578 689 MLIDTVTASYDK--YFFGDVGRETYDFFWSDFADWYIEASKARLYRSEYDSDAIIAQAVLLYIFENILKLLHPFM 761 (809)
Q Consensus 689 ~~~~~v~~a~e~--~~f~~a~~~i~~f~~~~~~n~Yi~~~k~~l~~~~~~~~~~~~~~~l~~vl~~l~~lL~P~~ 761 (809)
.-++++...++. |+-.-....-|--+.++..|+||...+..+.+ +...+..++.-+..-+. .|.+||+
T Consensus 9 ~gmkeFn~lLnqQvF~~p~i~ee~MvtvV~DwvnfYINYy~~~~~G--eqqeqdrAlqel~qeL~---tla~pFL 78 (89)
T PF09236_consen 9 TGMKEFNVLLNQQVFDDPLISEEAMVTVVNDWVNFYINYYKKQMTG--EQQEQDRALQELQQELN---TLANPFL 78 (89)
T ss_dssp HHHHHHHHHHHTS-CCSS-S-HHHHHHHHHHHHHHHHHHHHTT--S--SHHHHHHHHHHHHHHHH---HHHHHHH
T ss_pred HHHHHHHHHHhHhhcCCccCCHHHHHHHHHHHHHHHHHHHHHHhcC--ChHHHHHHHHHHHHHHH---HHHHHHH
Confidence 334444555543 33333444555555578899999999987755 33455555555554443 4555655
No 169
>cd06545 GH18_3CO4_chitinase The Bacteroides thetaiotaomicron protein represented by pdb structure 3CO4 is an uncharacterized bacterial member of the family 18 glycosyl hydrolases with homologs found in Flavobacterium, Stigmatella, and Pseudomonas.
Probab=29.19 E-value=1.8e+02 Score=30.42 Aligned_cols=99 Identities=14% Similarity=0.157 Sum_probs=53.1
Q ss_pred CCCCCCCcchhhHHHHHHHHHHHHHHHCCCcccccCCCCCCCCchHHHHHHHHHHcCCCccccCHHHHHHHHHHHHHHHH
Q 003578 99 PNVTGSLHMGHAMFVTLEDIMVRYHRMKGRPTLWLPGTDHAGIATQLVVEKMLAAEGIKRVELSRDEFTKRVWEWKEKYG 178 (809)
Q Consensus 99 Py~nG~lHiGH~~~~~~~Di~~Ry~rm~G~~V~~~~G~D~~Gl~~~~~~e~~~~~~g~~~~~~~~~~f~~~~~~~~~~~~ 178 (809)
++++|.+++.+-... +.. +.+..+..|-+|+...|-...+... .++ .++. .|++|++.+
T Consensus 33 i~~~G~l~~~~~~~~-~~~-~~~~~~~~~~kvl~sigg~~~~~~~-----~~~----~~~~--~r~~fi~~l-------- 91 (253)
T cd06545 33 PDANGTLNANPVRSE-LNS-VVNAAHAHNVKILISLAGGSPPEFT-----AAL----NDPA--KRKALVDKI-------- 91 (253)
T ss_pred ECCCCeEEecCcHHH-HHH-HHHHHHhCCCEEEEEEcCCCCCcch-----hhh----cCHH--HHHHHHHHH--------
Confidence 567888888642211 122 2334455788888766543332110 011 0111 244454433
Q ss_pred HHHHHHHHHh---cccccCCCccccCChhhHHHHHHHHHHHHHcCce
Q 003578 179 GTITSQIKRL---GASCDWTRERFTLDEQLSRAVVEAFIRLHEKGLI 222 (809)
Q Consensus 179 ~~~~~~l~~l---gi~~Dw~~~~~T~d~~~~~~v~~~f~~L~~~Gli 222 (809)
.+.+++. |+.+||..+..+ ...|..+++++-..|.+.|++
T Consensus 92 ---v~~~~~~~~DGIdiDwE~~~~~-~~~~~~fv~~Lr~~l~~~~~~ 134 (253)
T cd06545 92 ---INYVVSYNLDGIDVDLEGPDVT-FGDYLVFIRALYAALKKEGKL 134 (253)
T ss_pred ---HHHHHHhCCCceeEEeeccCcc-HhHHHHHHHHHHHHHhhcCcE
Confidence 3334444 788999875332 356778888888888776654
No 170
>TIGR03838 queuosine_YadB glutamyl-queuosine tRNA(Asp) synthetase. This protein resembles a shortened glutamyl-tRNA ligase, but its purpose is to modify tRNA(Asp) at a queuosine position in the anticodon rather than to charge a tRNA with its cognate amino acid.
Probab=28.46 E-value=58 Score=34.73 Aligned_cols=50 Identities=22% Similarity=0.227 Sum_probs=28.2
Q ss_pred cEEEeeehhHHhHHHHHHHHHHHhcCCCCceeEEEeeeEEccCCCcccccccC
Q 003578 541 TMLETGHDILFFWVARMVMMGIEFTGSVPFSHVYLHGLIRDSQGRKMSKTLGN 593 (809)
Q Consensus 541 d~~~~G~Di~~~w~~~~~~~~~~l~~~~Pf~~v~~hg~vld~~G~KMSKS~GN 593 (809)
+-.+=|.|.+..-+.- +.+-.++.-..| .+.-++++++.+|+|+||+.|-
T Consensus 187 ThViRG~D~l~~t~~q-~~l~~aLg~~~P--~y~H~pll~~~~g~kLSKR~~~ 236 (272)
T TIGR03838 187 THVVRGADLLDSTPRQ-IYLQRLLGLPPP--RYLHLPLVVNADGEKLSKQNGA 236 (272)
T ss_pred CEEEeCHhhhhccHHH-HHHHHHhCCCCC--eEEechhhhCCCCCeeeccCCc
Confidence 3445577755321111 122222332335 4555577789999999999875
No 171
>PF00749 tRNA-synt_1c: tRNA synthetases class I (E and Q), catalytic domain; InterPro: IPR020058 The aminoacyl-tRNA synthetases (6.1.1. from EC) catalyse the attachment of an amino acid to its cognate transfer RNA molecule in a highly specific two-step reaction. These proteins differ widely in size and oligomeric state, and have limited sequence homology []. The 20 aminoacyl-tRNA synthetases are divided into two classes, I and II. Class I aminoacyl-tRNA synthetases contain a characteristic Rossman fold catalytic domain and are mostly monomeric []. Class II aminoacyl-tRNA synthetases share an anti-parallel beta-sheet fold flanked by alpha-helices [], and are mostly dimeric or multimeric, containing at least three conserved regions [, , ]. However, tRNA binding involves an alpha-helical structure that is conserved between class I and class II synthetases. In reactions catalysed by the class I aminoacyl-tRNA synthetases, the aminoacyl group is coupled to the 2'-hydroxyl of the tRNA, while, in class II reactions, the 3'-hydroxyl site is preferred. The synthetases specific for arginine, cysteine, glutamic acid, glutamine, isoleucine, leucine, methionine, tyrosine, tryptophan and valine belong to class I synthetases. The synthetases specific for alanine, asparagine, aspartic acid, glycine, histidine, lysine, phenylalanine, proline, serine, and threonine belong to class-II synthetases []. Based on their mode of binding to the tRNA acceptor stem, both classes of tRNA synthetases have been subdivided into three subclasses, designated 1a, 1b, 1c and 2a, 2b, 2c. Glutamyl-tRNA synthetase (6.1.1.17 from EC) is a class Ic synthetase and shows several similarities with glutaminyl-tRNA synthetase concerning structure and catalytic properties. It is an alpha2 dimer. To date one crystal structure of a glutamyl-tRNA synthetase (Thermus thermophilus) has been solved. The molecule has the form of a bent cylinder and consists of four domains. The N-terminal half (domains 1 and 2) contains the 'Rossman fold' typical for class I synthetases and resembles the corresponding part of Escherichia coli GlnRS, whereas the C-terminal half exhibits a GluRS-specific structure []. ; GO: 0000166 nucleotide binding, 0005524 ATP binding, 0016876 ligase activity, forming aminoacyl-tRNA and related compounds, 0043039 tRNA aminoacylation, 0005737 cytoplasm; PDB: 2HZ7_A 2CFO_A 4A91_A 1NZJ_A 1N78_A 1G59_C 2CV2_A 2CV1_A 2CV0_B 1GLN_A ....
Probab=27.94 E-value=1.2e+02 Score=33.15 Aligned_cols=73 Identities=19% Similarity=0.049 Sum_probs=36.9
Q ss_pred CcEEEeeehhHHh-HHHHHHHHHHHhcCCCCceeEEEeeeEEccCCCcccccccCcc-ChhhHHHh-hCCchHHHHHhhC
Q 003578 540 TTMLETGHDILFF-WVARMVMMGIEFTGSVPFSHVYLHGLIRDSQGRKMSKTLGNVI-DPIDTIKE-FGADALRFTISLG 616 (809)
Q Consensus 540 ~d~~~~G~Di~~~-w~~~~~~~~~~l~~~~Pf~~v~~hg~vld~~G~KMSKS~GN~I-~p~dli~~-ygaD~lR~~ll~~ 616 (809)
+.-.+=|.|.+.. ..+..+.- ++.-..| .+.-|..+++.+|+|+||+.+..- ....+.+. +.+.++-=||+..
T Consensus 200 ITHViRG~D~l~~t~~Q~~L~~--~Lg~~~P--~~~H~pl~l~~~g~kLSKR~~~~~i~~~~~r~~g~~~~~~l~~L~~l 275 (314)
T PF00749_consen 200 ITHVIRGEDLLSSTPRQILLYE--ALGWPPP--PYAHLPLILNEDGKKLSKRKGAKSIELGDYREWGDPPEATLNYLARL 275 (314)
T ss_dssp -SEEEEEGGGTTCHHHHHHHHH--HCTSSS---EEEEEEEEEETTSSBSSTTCSHHBHHHHHHHHTT-THHHHHHHHHHT
T ss_pred cCeEEEccccccccHHHHHHHH--HhCCCCc--ceEeeeeeecCCCcEechhhccccccccccccCCCCHHHHHHHHHHh
Confidence 3445568886642 22222222 2222223 344456678999999999988653 23333332 3444444445443
No 172
>PRK12282 tryptophanyl-tRNA synthetase II; Reviewed
Probab=27.20 E-value=32 Score=37.83 Aligned_cols=17 Identities=35% Similarity=0.436 Sum_probs=13.6
Q ss_pred CCCCCCCcchhhHHHHH
Q 003578 99 PNVTGSLHMGHAMFVTL 115 (809)
Q Consensus 99 Py~nG~lHiGH~~~~~~ 115 (809)
--|||.+||||..+.+.
T Consensus 9 ~~PTG~~HLGn~l~~~~ 25 (333)
T PRK12282 9 DRPTGKLHLGHYVGSLK 25 (333)
T ss_pred eCCCCcchHHHHHHHHH
Confidence 35789999999888654
No 173
>KOG2144 consensus Tyrosyl-tRNA synthetase, cytoplasmic [Translation, ribosomal structure and biogenesis]
Probab=26.87 E-value=37 Score=36.00 Aligned_cols=52 Identities=15% Similarity=0.045 Sum_probs=33.2
Q ss_pred CCCcEEEeeehhHH-hHHHHHHHHHHHhcCCCCceeEEEeeeEEccC-CCcccccccC
Q 003578 538 YPTTMLETGHDILF-FWVARMVMMGIEFTGSVPFSHVYLHGLIRDSQ-GRKMSKTLGN 593 (809)
Q Consensus 538 ~p~d~~~~G~Di~~-~w~~~~~~~~~~l~~~~Pf~~v~~hg~vld~~-G~KMSKS~GN 593 (809)
.-+|+.+.|.||-. |-+++-..-.+. .+.| -+++|-|+-... |+|||+|--|
T Consensus 176 L~vD~qfgGvDQRKIf~~A~eylp~l~--ykKr--ihLmnpMvPGL~q~~KMSsSd~~ 229 (360)
T KOG2144|consen 176 LEVDAQFGGVDQRKIFVLAEEYLPDLG--YKKR--IHLMNPMVPGLAQGEKMSSSDPL 229 (360)
T ss_pred HhhhHHhcCccHHHHHHHHHHhhhhhC--cccc--eeecCCCCccccccCccccCCcc
Confidence 45889999999864 333433322222 2223 456788876555 9999999765
No 174
>KOG2145 consensus Cytoplasmic tryptophanyl-tRNA synthetase [Translation, ribosomal structure and biogenesis]
Probab=26.46 E-value=53 Score=34.83 Aligned_cols=27 Identities=22% Similarity=0.394 Sum_probs=21.6
Q ss_pred CCCCEEEeCCCCCCCCCCcchhhHHHH
Q 003578 88 GSDPFVISMPPPNVTGSLHMGHAMFVT 114 (809)
Q Consensus 88 ~~~~f~i~~~pPy~nG~lHiGH~~~~~ 114 (809)
.+++|++.++----++.+|+||..-.+
T Consensus 82 q~kpFyLYTGRGpSS~smHlGHliPFi 108 (397)
T KOG2145|consen 82 QGKPFYLYTGRGPSSESMHLGHLIPFI 108 (397)
T ss_pred cCCceEEEeCCCCCccccccccchhHH
Confidence 378999999966667789999987654
No 175
>COG3171 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=23.04 E-value=1.8e+02 Score=26.40 Aligned_cols=51 Identities=25% Similarity=0.416 Sum_probs=42.0
Q ss_pred HHHHHHHhcccccCCCccccCChhhHHHHHHHHHHHHHc-CceeecCccccc
Q 003578 181 ITSQIKRLGASCDWTRERFTLDEQLSRAVVEAFIRLHEK-GLIYQGSYMVNW 231 (809)
Q Consensus 181 ~~~~l~~lgi~~Dw~~~~~T~d~~~~~~v~~~f~~L~~~-Gliy~~~~~v~w 231 (809)
....|+.||.++.|+..--|.-....+++-.+...+.+. |+.|-|.....|
T Consensus 22 hl~EFQeLgF~v~~~~~eg~~ae~~dea~drFidevI~~Ngl~~~G~~~~~~ 73 (119)
T COG3171 22 HLGEFQELGFSVQWSFHEGTSAEDVDEAVDRFIDEVIAPNGLAFAGSGYLDW 73 (119)
T ss_pred cHHHHHhhheeeEEEecCCccHHHHHHHHHHHHHHHHccCceeEcCCcceee
Confidence 346789999999998777677778888888888888875 999999977666
Done!