Query 003579
Match_columns 809
No_of_seqs 1229 out of 4421
Neff 10.5
Searched_HMMs 46136
Date Fri Mar 29 02:06:39 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/003579.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/003579hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG1539 WD repeat protein [Gen 100.0 1E-140 3E-145 1090.0 68.3 785 1-804 21-820 (910)
2 KOG0319 WD40-repeat-containing 100.0 1.2E-54 2.7E-59 445.9 46.7 568 24-627 29-617 (775)
3 KOG0291 WD40-repeat-containing 100.0 9.1E-52 2E-56 424.7 60.4 525 24-637 65-719 (893)
4 KOG0318 WD40 repeat stress pro 100.0 5.4E-50 1.2E-54 395.9 60.3 561 15-628 18-601 (603)
5 KOG0318 WD40 repeat stress pro 100.0 7.3E-49 1.6E-53 388.0 54.0 514 24-587 69-602 (603)
6 KOG0271 Notchless-like WD40 re 100.0 3.2E-51 7E-56 388.9 30.2 365 172-585 106-479 (480)
7 KOG0306 WD40-repeat-containing 100.0 9.4E-49 2E-53 402.4 48.3 581 4-628 8-663 (888)
8 KOG0319 WD40-repeat-containing 100.0 1.3E-49 2.8E-54 408.9 42.1 489 24-587 115-619 (775)
9 KOG0291 WD40-repeat-containing 100.0 5.5E-47 1.2E-51 389.5 60.6 526 15-630 18-613 (893)
10 KOG0271 Notchless-like WD40 re 100.0 9E-49 2E-53 372.3 28.3 326 218-627 110-479 (480)
11 KOG0306 WD40-repeat-containing 100.0 1.4E-45 2.9E-50 379.1 50.4 485 24-590 75-667 (888)
12 KOG1408 WD40 repeat protein [F 100.0 5.9E-43 1.3E-47 356.7 37.7 547 25-628 47-712 (1080)
13 KOG0272 U4/U6 small nuclear ri 100.0 1.1E-42 2.3E-47 335.8 23.7 283 179-585 173-458 (459)
14 KOG0272 U4/U6 small nuclear ri 100.0 1.7E-42 3.8E-47 334.4 24.1 279 224-627 175-458 (459)
15 KOG1063 RNA polymerase II elon 100.0 1.5E-38 3.4E-43 324.9 45.7 582 15-629 14-699 (764)
16 KOG0296 Angio-associated migra 100.0 2E-39 4.3E-44 307.7 34.0 341 172-587 55-398 (399)
17 KOG0286 G-protein beta subunit 100.0 2.9E-39 6.2E-44 297.6 33.1 289 217-585 49-343 (343)
18 KOG1408 WD40 repeat protein [F 100.0 1.1E-38 2.5E-43 325.5 39.1 484 24-588 88-714 (1080)
19 KOG0276 Vesicle coat complex C 100.0 1.1E-37 2.4E-42 314.4 43.4 472 89-627 9-490 (794)
20 KOG0286 G-protein beta subunit 100.0 3.7E-38 7.9E-43 290.3 32.4 290 130-502 48-343 (343)
21 KOG0273 Beta-transducin family 100.0 7.2E-38 1.5E-42 306.4 34.0 326 177-629 174-523 (524)
22 KOG0315 G-protein beta subunit 100.0 9.1E-38 2E-42 281.0 31.4 291 237-607 10-309 (311)
23 KOG0279 G protein beta subunit 100.0 4.4E-37 9.6E-42 281.6 33.8 298 88-454 10-313 (315)
24 KOG2106 Uncharacterized conser 100.0 6.7E-35 1.4E-39 287.4 50.2 507 20-628 70-625 (626)
25 KOG0315 G-protein beta subunit 100.0 5.1E-37 1.1E-41 276.2 32.0 295 194-566 11-309 (311)
26 KOG0279 G protein beta subunit 100.0 9.1E-37 2E-41 279.6 32.3 291 172-587 6-313 (315)
27 KOG1063 RNA polymerase II elon 100.0 8.6E-36 1.9E-40 304.9 40.2 496 58-630 15-649 (764)
28 KOG0273 Beta-transducin family 100.0 6.6E-36 1.4E-40 292.6 31.9 341 85-545 170-523 (524)
29 KOG1539 WD repeat protein [Gen 100.0 1.4E-33 3E-38 294.6 50.4 541 8-586 67-647 (910)
30 KOG0295 WD40 repeat-containing 100.0 1.6E-36 3.4E-41 287.8 25.9 303 170-628 97-405 (406)
31 KOG2048 WD40 repeat protein [G 100.0 6.6E-33 1.4E-37 283.7 53.8 530 54-629 23-601 (691)
32 KOG0276 Vesicle coat complex C 100.0 9.4E-34 2E-38 286.2 43.2 463 53-585 10-488 (794)
33 KOG0292 Vesicle coat complex C 100.0 1.1E-33 2.5E-38 295.9 44.8 501 55-618 8-548 (1202)
34 KOG0263 Transcription initiati 100.0 5.4E-36 1.2E-40 312.6 26.5 280 173-588 370-650 (707)
35 KOG0296 Angio-associated migra 100.0 1.3E-34 2.8E-39 275.1 33.4 340 130-545 57-398 (399)
36 KOG0645 WD40 repeat protein [G 100.0 9.8E-34 2.1E-38 258.6 34.1 293 172-587 5-311 (312)
37 KOG0263 Transcription initiati 100.0 7E-36 1.5E-40 311.8 22.6 283 215-634 370-654 (707)
38 KOG2106 Uncharacterized conser 100.0 3.6E-32 7.9E-37 268.2 42.7 454 37-586 135-625 (626)
39 KOG0284 Polyadenylation factor 100.0 1E-35 2.2E-40 286.2 16.7 279 224-628 96-379 (464)
40 KOG0285 Pleiotropic regulator 100.0 3.3E-34 7.3E-39 270.8 24.7 281 221-628 148-438 (460)
41 KOG0295 WD40 repeat-containing 100.0 2E-34 4.3E-39 273.6 22.8 300 133-544 104-405 (406)
42 KOG0292 Vesicle coat complex C 100.0 1.6E-32 3.4E-37 287.4 39.0 408 137-628 9-517 (1202)
43 KOG0293 WD40 repeat-containing 100.0 2.2E-34 4.8E-39 276.9 23.3 291 261-629 218-513 (519)
44 KOG0265 U5 snRNP-specific prot 100.0 2.4E-33 5.1E-38 259.8 28.3 282 221-585 44-336 (338)
45 KOG0645 WD40 repeat protein [G 100.0 2.7E-32 5.9E-37 249.2 32.4 294 130-504 7-311 (312)
46 cd00200 WD40 WD40 domain, foun 100.0 4E-32 8.8E-37 280.9 37.0 287 174-585 2-289 (289)
47 KOG0285 Pleiotropic regulator 100.0 2.7E-33 5.8E-38 264.8 25.1 295 86-455 144-440 (460)
48 KOG0265 U5 snRNP-specific prot 100.0 8E-33 1.7E-37 256.3 27.1 297 128-501 38-335 (338)
49 KOG0284 Polyadenylation factor 100.0 2.5E-34 5.3E-39 276.7 17.6 282 180-544 95-379 (464)
50 KOG0293 WD40 repeat-containing 100.0 1.6E-33 3.4E-38 271.1 23.1 290 173-588 216-514 (519)
51 KOG0282 mRNA splicing factor [ 100.0 5.3E-34 1.1E-38 280.7 18.0 288 258-627 205-503 (503)
52 KOG0278 Serine/threonine kinas 100.0 2E-33 4.4E-38 252.9 19.0 290 175-591 8-301 (334)
53 KOG2048 WD40 repeat protein [G 100.0 6.8E-29 1.5E-33 254.5 52.2 500 91-628 23-547 (691)
54 cd00200 WD40 WD40 domain, foun 100.0 3.8E-31 8.3E-36 273.6 36.2 285 261-627 3-289 (289)
55 KOG0313 Microtubule binding pr 100.0 1.2E-31 2.5E-36 256.1 27.5 306 224-630 105-419 (423)
56 KOG0282 mRNA splicing factor [ 100.0 4.7E-33 1E-37 274.0 18.3 290 171-585 204-503 (503)
57 KOG0266 WD40 repeat-containing 100.0 1.8E-31 4E-36 289.3 32.6 290 217-587 152-454 (456)
58 KOG0268 Sof1-like rRNA process 100.0 8.9E-34 1.9E-38 268.7 10.7 366 217-745 60-429 (433)
59 KOG0316 Conserved WD40 repeat- 100.0 2.9E-31 6.2E-36 237.2 25.5 285 216-628 10-298 (307)
60 KOG0266 WD40 repeat-containing 100.0 4.9E-31 1.1E-35 286.0 32.1 286 266-629 157-454 (456)
61 PLN00181 protein SPA1-RELATED; 100.0 2.3E-30 5.1E-35 302.8 39.6 301 160-586 457-792 (793)
62 KOG0281 Beta-TrCP (transducin 100.0 6.9E-33 1.5E-37 260.7 14.4 286 181-592 197-482 (499)
63 KOG0281 Beta-TrCP (transducin 100.0 1.6E-32 3.6E-37 258.2 15.6 270 224-629 197-477 (499)
64 KOG0316 Conserved WD40 repeat- 100.0 2.6E-30 5.6E-35 231.1 27.2 284 173-542 9-296 (307)
65 PLN00181 protein SPA1-RELATED; 100.0 1.1E-29 2.3E-34 297.2 39.7 303 246-628 457-792 (793)
66 PF04192 Utp21: Utp21 specific 100.0 2E-33 4.3E-38 268.1 6.4 119 682-804 17-149 (237)
67 KOG0275 Conserved WD40 repeat- 100.0 1.8E-31 3.8E-36 248.9 17.6 284 180-585 212-507 (508)
68 KOG0275 Conserved WD40 repeat- 100.0 1.1E-31 2.3E-36 250.3 16.0 291 130-502 205-507 (508)
69 KOG0643 Translation initiation 100.0 3E-30 6.5E-35 235.1 23.7 292 176-588 5-318 (327)
70 KOG1407 WD40 repeat protein [F 100.0 1.4E-29 3.1E-34 230.1 27.6 276 266-621 18-295 (313)
71 KOG0278 Serine/threonine kinas 100.0 5.1E-30 1.1E-34 231.1 17.5 281 266-629 12-297 (334)
72 KOG0310 Conserved WD40 repeat- 100.0 4.5E-29 9.7E-34 246.6 24.7 273 224-621 26-302 (487)
73 KOG0313 Microtubule binding pr 100.0 1.2E-28 2.7E-33 235.5 26.9 279 55-343 104-417 (423)
74 KOG0305 Anaphase promoting com 100.0 1.1E-28 2.3E-33 254.6 28.2 277 186-589 182-463 (484)
75 KOG0643 Translation initiation 100.0 5.3E-28 1.2E-32 220.5 28.9 298 89-455 6-318 (327)
76 KOG1446 Histone H3 (Lys4) meth 100.0 2.2E-27 4.8E-32 223.0 33.8 281 224-587 14-303 (311)
77 KOG0640 mRNA cleavage stimulat 100.0 6.8E-29 1.5E-33 230.6 21.4 289 222-586 110-425 (430)
78 KOG0288 WD40 repeat protein Ti 100.0 2.1E-29 4.5E-34 243.3 18.6 284 261-627 169-459 (459)
79 KOG0288 WD40 repeat protein Ti 100.0 1.5E-29 3.3E-34 244.2 17.4 276 223-584 174-458 (459)
80 KOG0310 Conserved WD40 repeat- 100.0 2.1E-28 4.5E-33 241.9 25.2 280 180-544 25-308 (487)
81 KOG0305 Anaphase promoting com 100.0 3.6E-28 7.8E-33 250.8 27.1 269 152-506 189-463 (484)
82 KOG0283 WD40 repeat-containing 100.0 4.4E-28 9.4E-33 256.1 24.1 298 171-547 256-578 (712)
83 KOG0274 Cdc4 and related F-box 100.0 2.6E-27 5.7E-32 254.8 30.5 281 180-595 207-490 (537)
84 KOG1446 Histone H3 (Lys4) meth 100.0 3.5E-26 7.6E-31 214.9 33.9 294 171-543 4-301 (311)
85 KOG1407 WD40 repeat protein [F 100.0 4.3E-27 9.3E-32 214.0 26.9 280 175-537 14-294 (313)
86 KOG0640 mRNA cleavage stimulat 100.0 1.2E-27 2.6E-32 222.4 23.7 292 266-629 110-426 (430)
87 KOG0289 mRNA splicing factor [ 100.0 2.7E-27 5.8E-32 230.0 26.3 282 225-586 220-505 (506)
88 KOG1445 Tumor-specific antigen 100.0 1.4E-26 3E-31 234.4 32.0 538 84-632 70-801 (1012)
89 KOG0973 Histone transcription 100.0 2.4E-27 5.2E-32 256.8 27.9 303 267-628 12-354 (942)
90 KOG0283 WD40 repeat-containing 100.0 2.1E-27 4.7E-32 250.9 25.4 299 312-630 265-577 (712)
91 KOG0772 Uncharacterized conser 100.0 3.3E-27 7.1E-32 234.0 24.6 303 217-588 161-488 (641)
92 KOG0277 Peroxisomal targeting 100.0 1.8E-27 3.9E-32 215.6 20.7 280 227-628 11-308 (311)
93 KOG0294 WD40 repeat-containing 100.0 2.1E-26 4.6E-31 215.2 28.3 264 196-589 4-283 (362)
94 KOG0274 Cdc4 and related F-box 100.0 1E-26 2.2E-31 250.3 30.3 272 152-557 219-494 (537)
95 KOG0646 WD40 repeat protein [G 100.0 5E-27 1.1E-31 230.8 24.5 296 199-609 13-330 (476)
96 KOG0299 U3 snoRNP-associated p 100.0 7E-27 1.5E-31 229.3 25.4 284 174-584 135-453 (479)
97 KOG2055 WD40 repeat protein [G 100.0 6E-27 1.3E-31 229.5 24.2 284 268-629 213-512 (514)
98 KOG0308 Conserved WD40 repeat- 100.0 1.5E-27 3.4E-32 242.9 18.6 352 102-554 36-402 (735)
99 KOG0300 WD40 repeat-containing 100.0 7.9E-27 1.7E-31 217.4 21.5 307 152-589 125-478 (481)
100 KOG0277 Peroxisomal targeting 100.0 7.2E-27 1.6E-31 211.6 20.7 259 76-343 39-308 (311)
101 KOG0289 mRNA splicing factor [ 100.0 3.3E-26 7.1E-31 222.5 26.5 276 145-503 227-505 (506)
102 KOG2096 WD40 repeat protein [G 100.0 4.7E-26 1E-30 212.7 26.1 292 222-585 84-400 (420)
103 KOG0647 mRNA export protein (c 100.0 4.6E-26 1E-30 211.7 25.7 277 218-576 21-312 (347)
104 KOG0973 Histone transcription 100.0 2.2E-26 4.7E-31 249.4 27.0 291 180-547 12-357 (942)
105 KOG0294 WD40 repeat-containing 100.0 1.6E-25 3.4E-30 209.4 28.9 284 153-524 3-306 (362)
106 KOG0646 WD40 repeat protein [G 99.9 2.2E-26 4.7E-31 226.4 23.1 293 161-526 18-330 (476)
107 KOG1273 WD40 repeat protein [G 99.9 5E-26 1.1E-30 212.3 24.2 279 227-628 26-321 (405)
108 KOG0268 Sof1-like rRNA process 99.9 3.3E-27 7.1E-32 224.3 16.3 292 86-462 59-353 (433)
109 KOG0308 Conserved WD40 repeat- 99.9 1E-26 2.2E-31 237.0 20.6 346 186-628 29-392 (735)
110 PTZ00421 coronin; Provisional 99.9 9.3E-25 2E-29 235.3 37.0 164 176-345 70-246 (493)
111 KOG0647 mRNA export protein (c 99.9 1E-25 2.2E-30 209.4 24.9 280 179-534 25-312 (347)
112 KOG0301 Phospholipase A2-activ 99.9 4.9E-26 1.1E-30 233.9 25.0 242 85-344 6-249 (745)
113 KOG0641 WD40 repeat protein [G 99.9 4.4E-24 9.5E-29 189.8 33.9 290 181-545 32-349 (350)
114 KOG0772 Uncharacterized conser 99.9 6.8E-26 1.5E-30 224.7 24.7 300 172-543 158-485 (641)
115 PTZ00420 coronin; Provisional 99.9 1.2E-24 2.5E-29 235.1 36.2 250 157-486 50-318 (568)
116 KOG0299 U3 snoRNP-associated p 99.9 1.9E-25 4.1E-30 219.3 27.0 274 222-619 140-446 (479)
117 KOG0639 Transducin-like enhanc 99.9 1.9E-26 4E-31 227.6 19.8 284 266-627 417-702 (705)
118 KOG1274 WD40 repeat protein [G 99.9 6.3E-25 1.4E-29 233.0 32.2 277 265-626 10-297 (933)
119 KOG0300 WD40 repeat-containing 99.9 5.7E-26 1.2E-30 211.7 21.1 296 130-506 141-478 (481)
120 KOG1445 Tumor-specific antigen 99.9 6.2E-25 1.3E-29 222.5 29.5 168 173-345 71-249 (1012)
121 PTZ00421 coronin; Provisional 99.9 2.3E-24 5.1E-29 232.2 34.8 233 88-325 70-314 (493)
122 KOG1036 Mitotic spindle checkp 99.9 1.2E-24 2.5E-29 203.5 27.0 273 218-576 7-293 (323)
123 KOG0301 Phospholipase A2-activ 99.9 8.6E-25 1.9E-29 224.9 28.2 284 171-588 4-289 (745)
124 KOG0641 WD40 repeat protein [G 99.9 1.2E-23 2.7E-28 187.0 31.5 290 267-629 31-349 (350)
125 TIGR03866 PQQ_ABC_repeats PQQ- 99.9 1.6E-23 3.5E-28 218.6 37.3 284 239-608 3-300 (300)
126 KOG1036 Mitotic spindle checkp 99.9 3.1E-24 6.8E-29 200.6 25.8 276 181-535 13-294 (323)
127 KOG0639 Transducin-like enhanc 99.9 4.7E-25 1E-29 217.8 21.2 281 179-544 417-703 (705)
128 KOG2096 WD40 repeat protein [G 99.9 4.1E-24 8.9E-29 199.8 26.0 208 88-300 81-310 (420)
129 TIGR03866 PQQ_ABC_repeats PQQ- 99.9 4.6E-23 1E-27 215.1 36.9 294 152-525 2-300 (300)
130 PTZ00420 coronin; Provisional 99.9 2.2E-23 4.8E-28 225.2 35.1 227 109-346 50-295 (568)
131 KOG0650 WD40 repeat nucleolar 99.9 6.8E-24 1.5E-28 214.3 26.2 317 174-584 393-732 (733)
132 KOG1332 Vesicle coat complex C 99.9 2.9E-24 6.3E-29 193.8 19.8 237 150-454 22-286 (299)
133 KOG1963 WD40 repeat protein [G 99.9 6.3E-22 1.4E-26 210.3 39.6 492 63-630 23-584 (792)
134 KOG1274 WD40 repeat protein [G 99.9 1.4E-20 3E-25 200.3 47.2 245 90-345 10-263 (933)
135 KOG4283 Transcription-coupled 99.9 6.9E-23 1.5E-27 189.6 25.4 299 178-586 40-364 (397)
136 KOG0264 Nucleosome remodeling 99.9 2.3E-23 4.9E-28 205.1 23.3 253 89-344 120-404 (422)
137 KOG1332 Vesicle coat complex C 99.9 1.6E-23 3.6E-28 188.9 19.4 256 89-347 7-289 (299)
138 KOG2055 WD40 repeat protein [G 99.9 9.3E-23 2E-27 200.3 26.3 290 92-454 212-512 (514)
139 KOG1273 WD40 repeat protein [G 99.9 7.3E-23 1.6E-27 191.3 23.6 282 184-587 26-322 (405)
140 KOG4283 Transcription-coupled 99.9 1.2E-22 2.6E-27 188.0 23.4 308 89-503 39-364 (397)
141 KOG0264 Nucleosome remodeling 99.9 8.1E-23 1.8E-27 201.2 23.7 249 222-587 122-404 (422)
142 KOG4328 WD40 protein [Function 99.9 2.3E-22 5.1E-27 197.4 25.1 304 252-630 171-496 (498)
143 KOG1963 WD40 repeat protein [G 99.9 2.8E-20 6.1E-25 197.9 42.5 449 101-630 26-539 (792)
144 KOG1538 Uncharacterized conser 99.9 6.5E-21 1.4E-25 194.7 35.6 275 139-504 14-293 (1081)
145 KOG0321 WD40 repeat-containing 99.9 3E-22 6.5E-27 204.2 24.6 386 150-608 63-552 (720)
146 KOG0269 WD40 repeat-containing 99.9 6.7E-23 1.4E-27 213.5 20.1 284 183-589 41-342 (839)
147 COG2319 FOG: WD40 repeat [Gene 99.9 4E-19 8.7E-24 195.6 50.4 372 88-588 60-443 (466)
148 COG2319 FOG: WD40 repeat [Gene 99.9 4E-19 8.6E-24 195.6 49.3 372 175-630 59-443 (466)
149 KOG4328 WD40 protein [Function 99.9 1E-21 2.2E-26 192.9 24.7 304 166-587 171-495 (498)
150 KOG0650 WD40 repeat nucleolar 99.9 5.2E-22 1.1E-26 200.8 22.7 317 265-627 397-733 (733)
151 KOG4378 Nuclear protein COP1 [ 99.9 5.7E-22 1.2E-26 195.9 21.5 293 198-569 7-305 (673)
152 KOG2445 Nuclear pore complex c 99.9 5.6E-21 1.2E-25 178.5 26.7 287 262-608 7-342 (361)
153 KOG0269 WD40 repeat-containing 99.9 1.8E-22 3.9E-27 210.3 18.4 282 56-344 39-340 (839)
154 KOG0321 WD40 repeat-containing 99.9 1.2E-21 2.6E-26 199.8 23.9 318 228-589 53-393 (720)
155 KOG1538 Uncharacterized conser 99.9 1.5E-20 3.2E-25 192.2 31.4 476 57-569 13-506 (1081)
156 KOG2445 Nuclear pore complex c 99.9 1.1E-20 2.3E-25 176.7 27.3 254 89-344 9-318 (361)
157 KOG0267 Microtubule severing p 99.9 4.9E-23 1.1E-27 212.7 10.3 250 26-290 4-260 (825)
158 KOG4378 Nuclear protein COP1 [ 99.9 3.4E-21 7.3E-26 190.5 22.4 271 68-347 5-283 (673)
159 KOG4497 Uncharacterized conser 99.9 4.2E-21 9.1E-26 180.6 20.5 383 142-620 13-424 (447)
160 KOG0267 Microtubule severing p 99.9 7.9E-23 1.7E-27 211.2 9.6 254 281-620 5-260 (825)
161 KOG1034 Transcriptional repres 99.9 6.8E-21 1.5E-25 179.5 17.4 323 178-545 35-383 (385)
162 KOG2919 Guanine nucleotide-bin 99.9 7E-20 1.5E-24 172.2 23.2 285 270-619 51-361 (406)
163 KOG0302 Ribosome Assembly prot 99.9 3.5E-20 7.5E-25 177.8 21.5 250 89-343 147-437 (440)
164 KOG1034 Transcriptional repres 99.9 6E-20 1.3E-24 173.2 22.2 333 89-504 34-383 (385)
165 KOG1188 WD40 repeat protein [G 99.9 1.4E-20 3.1E-25 178.5 17.9 286 152-503 41-345 (376)
166 KOG0270 WD40 repeat-containing 99.9 4.2E-20 9.1E-25 181.2 20.3 241 103-349 192-454 (463)
167 KOG1009 Chromatin assembly com 99.9 3.9E-19 8.5E-24 172.5 25.7 328 181-591 13-376 (434)
168 KOG0270 WD40 repeat-containing 99.8 1.4E-19 3.1E-24 177.5 22.3 281 186-551 130-455 (463)
169 KOG0322 G-protein beta subunit 99.8 6.5E-20 1.4E-24 167.7 18.2 308 172-586 5-322 (323)
170 KOG0302 Ribosome Assembly prot 99.8 2.6E-19 5.7E-24 171.8 21.0 195 152-348 166-382 (440)
171 KOG1009 Chromatin assembly com 99.8 5.7E-19 1.2E-23 171.4 22.6 292 268-620 13-364 (434)
172 KOG1524 WD40 repeat-containing 99.8 2E-18 4.4E-23 172.6 25.2 437 90-628 11-522 (737)
173 KOG0307 Vesicle coat complex C 99.8 4.5E-20 9.7E-25 201.6 14.3 288 227-633 9-331 (1049)
174 KOG2919 Guanine nucleotide-bin 99.8 4.9E-18 1.1E-22 159.9 25.5 280 137-496 49-362 (406)
175 KOG4227 WD40 repeat protein [G 99.8 2.5E-18 5.4E-23 165.4 22.7 295 176-586 51-386 (609)
176 KOG0290 Conserved WD40 repeat- 99.8 7.4E-18 1.6E-22 156.4 24.5 289 213-620 35-358 (364)
177 PRK11028 6-phosphogluconolacto 99.8 7.5E-17 1.6E-21 169.8 35.1 272 239-629 4-304 (330)
178 KOG1188 WD40 repeat protein [G 99.8 2.3E-18 5.1E-23 163.5 20.8 276 194-587 41-346 (376)
179 KOG1310 WD40 repeat protein [G 99.8 1.7E-18 3.6E-23 173.7 20.3 251 173-462 42-311 (758)
180 PRK11028 6-phosphogluconolacto 99.8 8.6E-17 1.9E-21 169.3 34.5 294 198-606 7-327 (330)
181 PF02239 Cytochrom_D1: Cytochr 99.8 5.9E-17 1.3E-21 169.3 32.3 334 152-597 6-357 (369)
182 KOG0307 Vesicle coat complex C 99.8 2.7E-19 5.8E-24 195.6 12.7 275 110-457 36-330 (1049)
183 KOG0303 Actin-binding protein 99.8 9.2E-18 2E-22 162.2 20.8 233 88-324 76-319 (472)
184 KOG0642 Cell-cycle nuclear pro 99.8 1.5E-18 3.3E-23 175.4 15.8 271 262-598 289-572 (577)
185 KOG0649 WD40 repeat protein [G 99.8 1.7E-16 3.8E-21 143.6 27.1 269 57-341 11-313 (325)
186 KOG1272 WD40-repeat-containing 99.8 3.5E-19 7.5E-24 175.5 10.6 297 315-698 130-449 (545)
187 KOG4497 Uncharacterized conser 99.8 6.1E-17 1.3E-21 152.8 23.1 395 94-537 11-424 (447)
188 KOG0322 G-protein beta subunit 99.8 1.6E-17 3.4E-22 152.2 17.5 291 84-453 5-322 (323)
189 KOG0649 WD40 repeat protein [G 99.8 6E-16 1.3E-20 140.1 26.2 285 270-627 12-314 (325)
190 KOG1007 WD repeat protein TSSC 99.8 1.4E-16 3.1E-21 147.7 22.5 275 195-588 28-362 (370)
191 KOG1007 WD repeat protein TSSC 99.8 8.9E-17 1.9E-21 149.1 20.0 296 112-454 39-361 (370)
192 KOG0642 Cell-cycle nuclear pro 99.8 2.2E-17 4.7E-22 167.2 17.4 260 175-512 288-569 (577)
193 KOG1912 WD40 repeat protein [G 99.8 1.8E-15 3.9E-20 158.2 31.7 433 24-547 23-553 (1062)
194 KOG0644 Uncharacterized conser 99.8 3.4E-18 7.3E-23 179.7 11.2 286 173-549 182-472 (1113)
195 KOG2110 Uncharacterized conser 99.8 1.4E-15 3.1E-20 146.4 28.1 174 446-632 68-251 (391)
196 KOG1517 Guanine nucleotide bin 99.7 2.7E-16 5.8E-21 169.7 25.4 290 226-590 1066-1384(1387)
197 KOG1587 Cytoplasmic dynein int 99.7 4.4E-16 9.4E-21 166.7 26.9 285 247-588 222-517 (555)
198 KOG1517 Guanine nucleotide bin 99.7 2.7E-16 5.9E-21 169.7 23.9 291 139-547 1066-1383(1387)
199 KOG1310 WD40 repeat protein [G 99.7 2.1E-16 4.5E-21 158.9 21.4 226 222-506 48-305 (758)
200 PF02239 Cytochrom_D1: Cytochr 99.7 6.5E-15 1.4E-19 154.0 33.6 327 107-554 10-356 (369)
201 KOG1334 WD40 repeat protein [G 99.7 2.2E-17 4.7E-22 164.0 13.5 293 218-629 137-466 (559)
202 KOG2110 Uncharacterized conser 99.7 2E-14 4.4E-19 138.6 32.5 272 24-302 14-334 (391)
203 KOG0644 Uncharacterized conser 99.7 1.2E-17 2.6E-22 175.6 10.6 275 223-627 189-466 (1113)
204 KOG2139 WD40 repeat protein [G 99.7 2.6E-15 5.6E-20 143.9 25.3 305 181-587 98-431 (445)
205 KOG2111 Uncharacterized conser 99.7 1.8E-14 4E-19 136.2 29.8 229 23-257 13-258 (346)
206 KOG1240 Protein kinase contain 99.7 1.2E-15 2.7E-20 167.4 25.3 302 208-585 1034-1431(1431)
207 KOG1240 Protein kinase contain 99.7 1.3E-15 2.8E-20 167.3 24.9 266 80-348 1034-1338(1431)
208 KOG0771 Prolactin regulatory e 99.7 2.7E-15 5.9E-20 147.4 24.8 192 428-629 148-354 (398)
209 KOG4227 WD40 repeat protein [G 99.7 1.7E-15 3.7E-20 146.1 22.3 303 133-503 52-386 (609)
210 KOG1524 WD40 repeat-containing 99.7 1.7E-15 3.8E-20 151.9 22.8 263 224-584 14-283 (737)
211 KOG1587 Cytoplasmic dynein int 99.7 2.6E-15 5.5E-20 160.9 25.3 274 203-546 222-517 (555)
212 KOG1912 WD40 repeat protein [G 99.7 9.8E-15 2.1E-19 152.8 28.5 423 140-590 18-554 (1062)
213 KOG1334 WD40 repeat protein [G 99.7 1.2E-16 2.6E-21 158.8 13.7 318 173-547 134-468 (559)
214 KOG0303 Actin-binding protein 99.7 2.3E-15 5.1E-20 145.7 21.2 213 416-629 73-294 (472)
215 KOG1523 Actin-related protein 99.7 1.3E-14 2.7E-19 137.2 24.8 166 175-343 4-175 (361)
216 KOG0974 WD-repeat protein WDR6 99.7 1.5E-13 3.3E-18 149.6 35.6 272 57-349 8-293 (967)
217 KOG0771 Prolactin regulatory e 99.7 9.2E-16 2E-20 150.6 16.9 203 228-505 148-355 (398)
218 PRK01742 tolB translocation pr 99.7 3.8E-15 8.3E-20 161.6 22.0 236 160-485 183-426 (429)
219 KOG0974 WD-repeat protein WDR6 99.7 2.4E-12 5.2E-17 140.5 41.5 256 29-300 19-290 (967)
220 PRK01742 tolB translocation pr 99.7 1.4E-14 3.1E-19 157.2 23.7 237 202-568 183-426 (429)
221 KOG2139 WD40 repeat protein [G 99.6 1.1E-13 2.4E-18 132.8 26.1 199 139-348 100-313 (445)
222 KOG2315 Predicted translation 99.6 6.4E-13 1.4E-17 135.3 31.9 356 154-629 5-390 (566)
223 KOG2315 Predicted translation 99.6 1.2E-12 2.5E-17 133.5 32.6 372 111-609 9-411 (566)
224 KOG0290 Conserved WD40 repeat- 99.6 1.3E-13 2.8E-18 128.5 23.6 279 10-294 39-361 (364)
225 KOG3881 Uncharacterized conser 99.6 3.5E-14 7.6E-19 138.0 18.9 295 152-525 17-341 (412)
226 KOG2321 WD40 repeat protein [G 99.6 1.4E-13 3.1E-18 139.7 23.9 271 266-621 49-336 (703)
227 KOG1272 WD40-repeat-containing 99.6 2.1E-15 4.6E-20 149.1 10.5 267 225-579 130-401 (545)
228 KOG2394 WD40 protein DMR-N9 [G 99.6 2.9E-14 6.2E-19 143.7 18.4 239 102-350 134-458 (636)
229 KOG2394 WD40 protein DMR-N9 [G 99.6 4.5E-14 9.7E-19 142.3 19.6 142 425-566 220-383 (636)
230 KOG1523 Actin-related protein 99.6 3.4E-13 7.3E-18 127.7 23.6 207 137-347 10-239 (361)
231 COG5354 Uncharacterized protei 99.6 1.6E-12 3.6E-17 130.6 29.7 359 164-620 15-421 (561)
232 COG4946 Uncharacterized protei 99.6 1.7E-10 3.8E-15 114.9 43.3 437 134-619 33-509 (668)
233 KOG3881 Uncharacterized conser 99.6 1.4E-13 3E-18 133.8 21.1 274 224-609 55-342 (412)
234 PF10282 Lactonase: Lactonase, 99.6 1E-11 2.3E-16 130.6 36.3 281 283-629 2-322 (345)
235 PRK03629 tolB translocation pr 99.6 8.7E-13 1.9E-17 142.8 27.3 236 162-484 180-427 (429)
236 KOG2321 WD40 repeat protein [G 99.6 7.8E-13 1.7E-17 134.5 24.4 271 14-301 54-346 (703)
237 PF10282 Lactonase: Lactonase, 99.6 8.8E-11 1.9E-15 123.6 41.3 306 240-606 2-345 (345)
238 KOG2111 Uncharacterized conser 99.6 5.4E-12 1.2E-16 119.7 27.9 239 142-457 10-259 (346)
239 PRK03629 tolB translocation pr 99.6 1.2E-12 2.6E-17 141.6 27.4 170 427-608 245-427 (429)
240 PF04762 IKI3: IKI3 family; I 99.6 3.6E-09 7.8E-14 123.1 57.2 478 92-629 74-639 (928)
241 KOG1354 Serine/threonine prote 99.6 5.7E-13 1.2E-17 127.2 21.0 330 181-626 25-431 (433)
242 PRK04922 tolB translocation pr 99.6 3.2E-12 6.9E-17 139.2 30.0 232 291-608 185-432 (433)
243 KOG2041 WD40 repeat protein [G 99.6 1.9E-11 4.2E-16 127.2 33.1 519 55-637 13-627 (1189)
244 COG2706 3-carboxymuconate cycl 99.5 6.3E-11 1.4E-15 115.4 33.3 273 289-633 15-325 (346)
245 PRK02889 tolB translocation pr 99.5 1.4E-12 3.1E-17 141.3 24.7 178 161-346 176-362 (427)
246 PF08662 eIF2A: Eukaryotic tra 99.5 9E-13 1.9E-17 125.2 20.0 148 478-629 9-179 (194)
247 KOG1409 Uncharacterized conser 99.5 7.9E-13 1.7E-17 126.4 19.1 336 171-588 14-395 (404)
248 PRK04922 tolB translocation pr 99.5 1.7E-12 3.7E-17 141.3 24.2 178 161-346 184-370 (433)
249 PRK02889 tolB translocation pr 99.5 6E-12 1.3E-16 136.5 26.9 239 203-568 176-425 (427)
250 PRK05137 tolB translocation pr 99.5 7.7E-12 1.7E-16 136.4 27.9 175 161-343 182-365 (435)
251 COG5354 Uncharacterized protei 99.5 4.3E-11 9.4E-16 120.6 30.2 334 206-629 15-395 (561)
252 PRK05137 tolB translocation pr 99.5 8.7E-12 1.9E-16 136.0 27.7 233 291-609 183-433 (435)
253 PF08662 eIF2A: Eukaryotic tra 99.5 2.6E-12 5.7E-17 122.0 20.6 159 426-596 7-187 (194)
254 TIGR02658 TTQ_MADH_Hv methylam 99.5 4.4E-10 9.6E-15 114.6 36.0 278 161-512 27-338 (352)
255 KOG1409 Uncharacterized conser 99.5 5.2E-12 1.1E-16 120.8 19.6 248 86-346 17-272 (404)
256 TIGR02658 TTQ_MADH_Hv methylam 99.5 1.3E-09 2.8E-14 111.3 37.8 281 192-554 11-339 (352)
257 KOG2314 Translation initiation 99.5 4.7E-11 1E-15 121.2 26.5 328 163-577 192-557 (698)
258 KOG2041 WD40 repeat protein [G 99.4 1.9E-10 4.1E-15 120.0 30.9 404 144-634 21-578 (1189)
259 PF04762 IKI3: IKI3 family; I 99.4 7.4E-08 1.6E-12 112.4 54.6 479 19-587 79-639 (928)
260 KOG2314 Translation initiation 99.4 2.6E-10 5.7E-15 116.0 29.7 337 205-630 192-574 (698)
261 COG2706 3-carboxymuconate cycl 99.4 2.2E-09 4.8E-14 104.8 33.8 302 246-607 15-345 (346)
262 KOG4547 WD40 repeat-containing 99.4 5.1E-11 1.1E-15 122.8 23.6 197 103-306 5-228 (541)
263 TIGR03300 assembly_YfgL outer 99.4 1.1E-09 2.3E-14 117.8 31.0 300 152-542 66-376 (377)
264 TIGR02800 propeller_TolB tol-p 99.4 1.9E-10 4.1E-15 125.8 25.4 186 425-621 190-387 (417)
265 KOG1354 Serine/threonine prote 99.3 1.2E-10 2.7E-15 111.5 20.4 274 267-628 24-358 (433)
266 TIGR02800 propeller_TolB tol-p 99.3 2.6E-10 5.7E-15 124.7 25.9 176 162-345 171-355 (417)
267 PRK04792 tolB translocation pr 99.3 3.6E-10 7.9E-15 122.9 26.4 172 162-341 199-377 (448)
268 PRK01029 tolB translocation pr 99.3 7.2E-10 1.6E-14 119.6 28.2 133 477-610 283-426 (428)
269 KOG4547 WD40 repeat-containing 99.3 2.5E-10 5.5E-15 117.7 22.0 190 434-630 3-221 (541)
270 TIGR03300 assembly_YfgL outer 99.3 3.3E-09 7.2E-14 114.0 32.1 299 99-501 61-376 (377)
271 PRK00178 tolB translocation pr 99.3 1.2E-09 2.5E-14 119.6 27.2 171 426-608 244-427 (430)
272 PRK00178 tolB translocation pr 99.3 9.8E-10 2.1E-14 120.2 26.5 194 424-628 198-405 (430)
273 COG4946 Uncharacterized protei 99.3 2.4E-08 5.1E-13 100.1 32.6 290 102-455 331-655 (668)
274 KOG0280 Uncharacterized conser 99.3 1.5E-09 3.2E-14 102.2 21.7 271 202-590 45-336 (339)
275 PRK01029 tolB translocation pr 99.3 2.1E-09 4.5E-14 116.0 26.0 196 425-629 185-403 (428)
276 PRK04792 tolB translocation pr 99.2 1.9E-09 4.2E-14 117.3 25.6 194 424-628 217-424 (448)
277 KOG0309 Conserved WD40 repeat- 99.2 1.6E-10 3.5E-15 121.1 14.3 287 181-588 24-340 (1081)
278 KOG1832 HIV-1 Vpr-binding prot 99.2 2.8E-11 6.1E-16 129.0 6.9 269 260-620 1094-1381(1516)
279 KOG1064 RAVE (regulator of V-A 99.2 2.1E-10 4.6E-15 131.3 13.7 225 194-555 2181-2408(2439)
280 KOG1064 RAVE (regulator of V-A 99.1 6E-10 1.3E-14 127.7 15.2 180 159-348 2188-2370(2439)
281 KOG0280 Uncharacterized conser 99.1 5.6E-09 1.2E-13 98.4 19.0 237 105-346 87-335 (339)
282 KOG4532 WD40-like repeat conta 99.1 2.8E-08 6E-13 92.5 22.7 272 159-505 50-332 (344)
283 PLN02919 haloacid dehalogenase 99.1 7.7E-08 1.7E-12 114.5 32.9 75 518-592 806-893 (1057)
284 PRK11138 outer membrane biogen 99.1 6.7E-08 1.5E-12 104.2 29.9 304 152-544 70-393 (394)
285 KOG1897 Damage-specific DNA bi 99.1 5.2E-05 1.1E-09 83.9 50.9 521 15-627 306-896 (1096)
286 PRK04043 tolB translocation pr 99.1 4.8E-08 1E-12 104.6 25.3 190 426-628 189-397 (419)
287 KOG4190 Uncharacterized conser 99.1 1.9E-09 4.1E-14 109.4 13.2 287 266-625 733-1032(1034)
288 PLN02919 haloacid dehalogenase 99.0 2.2E-07 4.8E-12 110.7 32.7 125 425-549 740-892 (1057)
289 PRK11138 outer membrane biogen 99.0 7.9E-07 1.7E-11 95.9 31.3 307 192-587 68-394 (394)
290 KOG3914 WD repeat protein WDR4 99.0 5.2E-09 1.1E-13 103.2 11.5 171 425-598 63-234 (390)
291 KOG3914 WD repeat protein WDR4 99.0 2.5E-08 5.3E-13 98.5 16.1 171 270-515 64-234 (390)
292 KOG4190 Uncharacterized conser 98.9 5.1E-09 1.1E-13 106.4 11.3 288 216-583 728-1032(1034)
293 KOG0882 Cyclophilin-related pe 98.9 2.3E-08 4.9E-13 99.7 14.2 254 266-596 7-314 (558)
294 PF08450 SGL: SMP-30/Gluconola 98.9 3.8E-06 8.2E-11 84.2 30.6 184 427-617 42-244 (246)
295 KOG0309 Conserved WD40 repeat- 98.9 1.5E-08 3.2E-13 106.7 13.0 198 140-346 27-234 (1081)
296 KOG4532 WD40-like repeat conta 98.9 3.9E-07 8.4E-12 85.0 20.5 235 102-343 83-330 (344)
297 COG5170 CDC55 Serine/threonine 98.9 1.1E-07 2.3E-12 90.3 17.2 335 181-627 26-458 (460)
298 PF15492 Nbas_N: Neuroblastoma 98.9 2.2E-06 4.9E-11 81.6 25.8 146 187-335 3-168 (282)
299 PRK04043 tolB translocation pr 98.9 1.5E-06 3.3E-11 93.2 28.0 164 161-335 169-339 (419)
300 KOG4649 PQQ (pyrrolo-quinoline 98.9 1.6E-05 3.6E-10 74.2 30.4 109 152-264 24-132 (354)
301 PF15492 Nbas_N: Neuroblastoma 98.8 6.1E-06 1.3E-10 78.8 27.0 43 556-598 228-270 (282)
302 KOG4714 Nucleoporin [Nuclear s 98.8 5.3E-08 1.1E-12 90.3 12.6 187 153-345 49-255 (319)
303 KOG0882 Cyclophilin-related pe 98.8 1.3E-07 2.9E-12 94.3 16.1 275 180-513 8-314 (558)
304 PRK02888 nitrous-oxide reducta 98.8 2.1E-06 4.5E-11 92.5 26.1 188 426-636 236-461 (635)
305 KOG4714 Nucleoporin [Nuclear s 98.8 6.3E-08 1.4E-12 89.8 12.6 166 130-298 82-254 (319)
306 COG5170 CDC55 Serine/threonine 98.8 1.9E-07 4E-12 88.8 14.8 192 147-343 95-366 (460)
307 PF06433 Me-amine-dh_H: Methyl 98.8 2.4E-05 5.2E-10 78.2 30.0 291 161-555 17-330 (342)
308 KOG4649 PQQ (pyrrolo-quinoline 98.8 7.7E-05 1.7E-09 69.8 31.0 106 102-213 62-167 (354)
309 PF13360 PQQ_2: PQQ-like domai 98.7 1.3E-05 2.8E-10 80.1 27.3 216 35-262 2-237 (238)
310 PF13360 PQQ_2: PQQ-like domai 98.7 5.9E-06 1.3E-10 82.5 24.0 220 112-349 2-235 (238)
311 PF00400 WD40: WD domain, G-be 98.7 6.5E-08 1.4E-12 65.1 6.3 39 547-585 1-39 (39)
312 PF08450 SGL: SMP-30/Gluconola 98.7 7.7E-05 1.7E-09 74.7 31.3 191 143-344 5-213 (246)
313 KOG1645 RING-finger-containing 98.7 3.6E-06 7.7E-11 83.3 20.2 165 163-332 175-348 (463)
314 KOG2695 WD40 repeat protein [G 98.7 9.8E-08 2.1E-12 92.1 9.2 155 443-607 231-401 (425)
315 PF07433 DUF1513: Protein of u 98.6 2.2E-05 4.7E-10 77.6 25.1 217 390-620 18-278 (305)
316 KOG2066 Vacuolar assembly/sort 98.6 1.6E-06 3.5E-11 93.2 17.6 181 425-630 40-234 (846)
317 PF06433 Me-amine-dh_H: Methyl 98.6 4.4E-05 9.4E-10 76.4 26.2 273 247-598 17-331 (342)
318 PRK02888 nitrous-oxide reducta 98.6 8.6E-06 1.9E-10 87.8 22.7 104 473-576 319-450 (635)
319 PF07433 DUF1513: Protein of u 98.6 2.1E-05 4.6E-10 77.6 23.3 197 425-629 5-247 (305)
320 KOG3617 WD40 and TPR repeat-co 98.5 2E-06 4.3E-11 92.5 15.6 112 184-300 18-133 (1416)
321 cd00216 PQQ_DH Dehydrogenases 98.5 0.00012 2.5E-09 81.0 29.9 194 152-351 62-326 (488)
322 cd00216 PQQ_DH Dehydrogenases 98.5 0.00043 9.3E-09 76.6 33.8 176 429-611 221-450 (488)
323 KOG2695 WD40 repeat protein [G 98.5 4.9E-07 1.1E-11 87.4 8.9 123 425-556 253-387 (425)
324 KOG1920 IkappaB kinase complex 98.5 0.0019 4E-08 73.8 38.0 277 53-344 15-365 (1265)
325 KOG1897 Damage-specific DNA bi 98.5 0.0052 1.1E-07 68.8 55.2 560 25-625 368-1000(1096)
326 KOG3617 WD40 and TPR repeat-co 98.5 7.1E-06 1.5E-10 88.4 17.5 114 226-347 17-134 (1416)
327 KOG3621 WD40 repeat-containing 98.5 2.2E-05 4.7E-10 83.7 20.9 197 142-348 38-248 (726)
328 PF00400 WD40: WD domain, G-be 98.5 6.3E-07 1.4E-11 60.2 6.3 39 171-209 1-39 (39)
329 KOG1832 HIV-1 Vpr-binding prot 98.4 2.5E-07 5.4E-12 99.7 6.0 169 172-351 1092-1262(1516)
330 KOG2114 Vacuolar assembly/sort 98.4 7.2E-05 1.6E-09 81.6 24.3 197 141-345 27-244 (933)
331 PF00930 DPPIV_N: Dipeptidyl p 98.4 0.00014 2.9E-09 77.1 26.6 304 190-575 1-345 (353)
332 KOG1645 RING-finger-containing 98.4 1.6E-05 3.4E-10 79.0 17.6 93 249-347 175-269 (463)
333 PF08596 Lgl_C: Lethal giant l 98.4 8.8E-05 1.9E-09 78.3 24.7 202 424-628 86-334 (395)
334 KOG1275 PAB-dependent poly(A) 98.4 5.3E-06 1.1E-10 90.4 14.9 183 102-296 146-340 (1118)
335 TIGR03075 PQQ_enz_alc_DH PQQ-d 98.4 0.0017 3.8E-08 72.0 34.4 109 152-264 70-198 (527)
336 KOG1920 IkappaB kinase complex 98.3 0.00052 1.1E-08 78.0 28.9 242 224-547 68-324 (1265)
337 PF00930 DPPIV_N: Dipeptidyl p 98.3 0.00041 8.9E-09 73.5 27.4 287 246-619 22-348 (353)
338 KOG2114 Vacuolar assembly/sort 98.3 0.00018 3.8E-09 78.7 23.6 207 232-513 31-252 (933)
339 KOG3621 WD40 repeat-containing 98.3 0.00013 2.8E-09 78.1 21.3 118 181-299 33-155 (726)
340 KOG1275 PAB-dependent poly(A) 98.3 2.5E-05 5.4E-10 85.4 15.9 184 152-343 148-341 (1118)
341 COG3391 Uncharacterized conser 98.2 0.0039 8.4E-08 66.6 31.6 279 249-611 13-311 (381)
342 PF06977 SdiA-regulated: SdiA- 98.2 0.0012 2.6E-08 64.6 25.0 214 224-500 21-246 (248)
343 PF04053 Coatomer_WDAD: Coatom 98.2 0.00033 7.2E-09 75.0 22.8 183 425-629 69-262 (443)
344 TIGR03075 PQQ_enz_alc_DH PQQ-d 98.2 0.0082 1.8E-07 66.7 34.3 69 193-264 69-147 (527)
345 PF11768 DUF3312: Protein of u 98.2 0.0078 1.7E-07 64.0 31.5 77 472-549 257-333 (545)
346 KOG2066 Vacuolar assembly/sort 98.2 7.3E-05 1.6E-09 80.9 16.8 184 93-298 39-233 (846)
347 PF14583 Pectate_lyase22: Olig 98.2 0.0017 3.7E-08 66.5 25.7 180 144-330 42-253 (386)
348 PF14583 Pectate_lyase22: Olig 98.1 0.018 3.9E-07 59.2 32.4 170 448-628 170-380 (386)
349 PF03178 CPSF_A: CPSF A subuni 98.1 0.0021 4.5E-08 67.3 25.8 209 36-252 2-262 (321)
350 PF08596 Lgl_C: Lethal giant l 98.1 0.0014 3E-08 69.4 24.0 242 270-576 3-325 (395)
351 PF04841 Vps16_N: Vps16, N-ter 98.1 0.0055 1.2E-07 65.9 28.9 109 425-556 217-325 (410)
352 PF04053 Coatomer_WDAD: Coatom 98.0 0.00018 3.9E-09 77.0 17.0 169 425-616 33-213 (443)
353 PF06977 SdiA-regulated: SdiA- 98.0 0.0032 6.9E-08 61.7 23.8 185 423-616 20-239 (248)
354 PF00780 CNH: CNH domain; Int 98.0 0.0089 1.9E-07 61.0 28.2 244 235-556 6-266 (275)
355 COG0823 TolB Periplasmic compo 98.0 0.00021 4.6E-09 76.2 16.4 186 425-620 193-391 (425)
356 PF03178 CPSF_A: CPSF A subuni 98.0 0.002 4.3E-08 67.4 23.4 178 436-624 42-260 (321)
357 PF08553 VID27: VID27 cytoplas 97.9 0.00087 1.9E-08 75.7 20.8 135 159-297 502-646 (794)
358 PF04841 Vps16_N: Vps16, N-ter 97.9 0.015 3.2E-07 62.5 29.2 194 77-283 63-274 (410)
359 PF11768 DUF3312: Protein of u 97.9 0.00016 3.4E-09 76.4 13.5 101 115-220 238-338 (545)
360 COG3391 Uncharacterized conser 97.9 0.038 8.2E-07 59.0 31.3 285 163-525 13-308 (381)
361 PF00780 CNH: CNH domain; Int 97.8 0.026 5.7E-07 57.6 27.8 147 191-347 5-168 (275)
362 COG0823 TolB Periplasmic compo 97.8 0.001 2.2E-08 71.2 17.4 167 161-335 173-346 (425)
363 KOG1008 Uncharacterized conser 97.8 8.1E-06 1.8E-10 85.7 1.6 201 425-634 57-280 (783)
364 KOG4640 Anaphase-promoting com 97.6 0.00029 6.3E-09 74.5 9.5 95 181-278 20-115 (665)
365 KOG1008 Uncharacterized conser 97.6 3.9E-05 8.4E-10 80.8 3.1 204 226-504 58-275 (783)
366 PF02897 Peptidase_S9_N: Proly 97.6 0.041 8.9E-07 60.0 27.0 106 227-334 126-246 (414)
367 KOG4640 Anaphase-promoting com 97.6 0.00032 6.9E-09 74.2 9.5 95 513-608 18-115 (665)
368 PF02897 Peptidase_S9_N: Proly 97.6 0.11 2.4E-06 56.6 29.9 116 184-301 126-261 (414)
369 PF05694 SBP56: 56kDa selenium 97.5 0.064 1.4E-06 55.7 25.2 182 430-616 135-391 (461)
370 KOG1898 Splicing factor 3b, su 97.4 0.2 4.4E-06 57.0 29.2 109 194-302 550-675 (1205)
371 smart00320 WD40 WD40 repeats. 97.4 0.00048 1E-08 45.2 5.9 39 547-585 2-40 (40)
372 PF14655 RAB3GAP2_N: Rab3 GTPa 97.4 0.25 5.4E-06 52.4 29.2 91 424-514 307-408 (415)
373 COG3490 Uncharacterized protei 97.4 0.14 3.1E-06 49.5 23.6 273 213-543 58-346 (366)
374 COG3386 Gluconolactonase [Carb 97.4 0.055 1.2E-06 55.2 22.8 238 229-534 29-274 (307)
375 TIGR03074 PQQ_membr_DH membran 97.4 0.46 9.9E-06 55.0 38.2 110 152-265 195-354 (764)
376 PF08553 VID27: VID27 cytoplas 97.4 0.013 2.9E-07 66.4 19.7 139 486-628 493-646 (794)
377 PF07995 GSDH: Glucose / Sorbo 97.4 0.18 4E-06 52.6 26.9 73 510-582 247-330 (331)
378 PF14783 BBS2_Mid: Ciliary BBS 97.4 0.0091 2E-07 49.3 13.3 96 147-251 12-110 (111)
379 PF14783 BBS2_Mid: Ciliary BBS 97.3 0.016 3.5E-07 47.9 14.7 101 227-339 2-109 (111)
380 PRK13616 lipoprotein LpqB; Pro 97.3 0.048 1E-06 61.1 22.6 176 160-344 328-525 (591)
381 TIGR03074 PQQ_membr_DH membran 97.3 0.64 1.4E-05 53.8 38.6 116 102-222 193-355 (764)
382 COG3204 Uncharacterized protei 97.2 0.082 1.8E-06 51.6 20.3 121 224-345 85-211 (316)
383 COG3386 Gluconolactonase [Carb 97.2 0.14 3.1E-06 52.2 23.5 207 111-333 45-274 (307)
384 PRK13616 lipoprotein LpqB; Pro 97.2 0.045 9.7E-07 61.4 21.4 183 139-337 351-561 (591)
385 KOG2395 Protein involved in va 97.1 0.015 3.3E-07 60.7 15.2 142 152-298 346-500 (644)
386 smart00320 WD40 WD40 repeats. 97.0 0.002 4.4E-08 42.0 5.7 39 171-209 2-40 (40)
387 PF05096 Glu_cyclase_2: Glutam 97.0 0.4 8.7E-06 46.9 24.5 183 425-618 45-250 (264)
388 KOG2444 WD40 repeat protein [G 96.9 0.0012 2.5E-08 61.5 4.8 143 154-300 33-179 (238)
389 PF14655 RAB3GAP2_N: Rab3 GTPa 96.9 0.037 8.1E-07 58.4 16.2 89 176-264 302-407 (415)
390 COG3204 Uncharacterized protei 96.8 0.28 6.1E-06 48.0 20.2 164 178-343 82-262 (316)
391 COG3490 Uncharacterized protei 96.8 0.52 1.1E-05 45.8 24.2 155 425-585 162-346 (366)
392 PF15390 DUF4613: Domain of un 96.8 0.97 2.1E-05 48.7 27.7 117 141-257 60-188 (671)
393 PF05694 SBP56: 56kDa selenium 96.8 0.27 5.9E-06 51.2 20.7 199 152-352 88-350 (461)
394 PF05096 Glu_cyclase_2: Glutam 96.7 0.66 1.4E-05 45.5 22.9 180 97-288 48-250 (264)
395 COG5276 Uncharacterized conser 96.7 0.67 1.4E-05 45.3 30.8 234 56-300 42-287 (370)
396 KOG2444 WD40 repeat protein [G 96.7 0.0049 1.1E-07 57.4 7.1 104 485-588 69-178 (238)
397 KOG2395 Protein involved in va 96.7 0.099 2.1E-06 54.9 16.7 137 488-628 348-499 (644)
398 KOG2079 Vacuolar assembly/sort 96.6 0.0062 1.3E-07 68.8 8.6 104 191-298 97-203 (1206)
399 PF14870 PSII_BNR: Photosynthe 96.5 1.1 2.4E-05 45.5 30.2 273 55-341 15-301 (302)
400 COG5276 Uncharacterized conser 96.5 0.94 2E-05 44.3 30.5 298 28-343 53-368 (370)
401 KOG4499 Ca2+-binding protein R 96.4 0.83 1.8E-05 43.1 20.0 143 474-617 108-273 (310)
402 PF10647 Gmad1: Lipoprotein Lp 96.4 1 2.2E-05 45.0 22.2 116 226-346 25-146 (253)
403 KOG3630 Nuclear pore complex, 96.4 0.078 1.7E-06 60.7 14.9 150 425-575 101-261 (1405)
404 KOG4499 Ca2+-binding protein R 96.3 0.84 1.8E-05 43.0 18.4 142 426-568 110-264 (310)
405 PF12894 Apc4_WD40: Anaphase-p 96.2 0.016 3.5E-07 39.9 5.6 34 181-215 11-44 (47)
406 PF10647 Gmad1: Lipoprotein Lp 96.2 0.53 1.1E-05 47.0 18.8 151 183-336 25-187 (253)
407 KOG2079 Vacuolar assembly/sort 96.2 0.017 3.7E-07 65.5 8.6 101 485-587 98-203 (1206)
408 PF14727 PHTB1_N: PTHB1 N-term 96.1 2.5 5.3E-05 45.1 28.1 110 234-344 34-163 (418)
409 COG3292 Predicted periplasmic 96.1 1 2.2E-05 48.2 20.2 135 152-293 176-313 (671)
410 PHA02713 hypothetical protein; 96.1 0.37 7.9E-06 54.4 18.8 188 152-348 305-537 (557)
411 PHA02713 hypothetical protein; 96.0 0.52 1.1E-05 53.1 19.7 214 37-263 273-541 (557)
412 TIGR02604 Piru_Ver_Nterm putat 96.0 0.28 6E-06 52.2 16.7 142 475-619 14-204 (367)
413 PRK13684 Ycf48-like protein; P 96.0 2.5 5.5E-05 44.2 28.9 272 56-342 45-329 (334)
414 TIGR02604 Piru_Ver_Nterm putat 95.9 3 6.6E-05 44.4 24.7 65 269-335 14-90 (367)
415 KOG4441 Proteins containing BT 95.9 0.82 1.8E-05 51.5 20.3 96 239-337 287-392 (571)
416 PF12234 Rav1p_C: RAVE protein 95.6 0.4 8.6E-06 53.4 15.9 112 516-630 30-157 (631)
417 PF07995 GSDH: Glucose / Sorbo 95.6 3.6 7.9E-05 43.0 23.1 68 556-624 251-330 (331)
418 PF08728 CRT10: CRT10; InterP 95.4 0.77 1.7E-05 51.7 17.5 150 436-586 49-245 (717)
419 KOG1916 Nuclear protein, conta 95.4 0.013 2.9E-07 64.8 3.5 157 472-632 130-326 (1283)
420 PF15390 DUF4613: Domain of un 95.3 5.4 0.00012 43.3 28.4 150 182-343 20-185 (671)
421 PF12894 Apc4_WD40: Anaphase-p 95.3 0.059 1.3E-06 37.2 5.3 36 512-548 8-43 (47)
422 PRK13684 Ycf48-like protein; P 95.2 4.7 0.0001 42.2 29.6 149 425-585 173-329 (334)
423 COG3292 Predicted periplasmic 95.1 5.9 0.00013 42.8 28.4 475 57-629 40-531 (671)
424 PRK10115 protease 2; Provision 95.1 8.8 0.00019 44.6 32.7 59 226-288 128-191 (686)
425 KOG2377 Uncharacterized conser 95.0 0.62 1.3E-05 48.2 13.8 141 199-345 39-186 (657)
426 KOG2280 Vacuolar assembly/sort 94.8 2 4.3E-05 47.8 17.8 195 77-279 66-270 (829)
427 PF12234 Rav1p_C: RAVE protein 94.8 0.7 1.5E-05 51.5 14.9 107 478-586 33-155 (631)
428 KOG4441 Proteins containing BT 94.8 2.4 5.1E-05 47.9 19.5 222 26-258 285-549 (571)
429 PF03022 MRJP: Major royal jel 94.8 3.5 7.6E-05 41.9 19.1 160 476-637 2-223 (287)
430 PF10433 MMS1_N: Mono-function 94.6 9.6 0.00021 42.7 42.5 393 140-567 46-503 (504)
431 PHA03098 kelch-like protein; P 94.5 1.8 3.9E-05 48.9 18.2 133 152-289 344-497 (534)
432 KOG3630 Nuclear pore complex, 94.4 0.39 8.5E-06 55.3 11.8 188 428-617 45-262 (1405)
433 TIGR03118 PEPCTERM_chp_1 conse 94.4 6.1 0.00013 39.4 22.0 236 270-567 24-307 (336)
434 KOG1900 Nuclear pore complex, 94.3 12 0.00025 44.9 23.5 179 164-348 63-276 (1311)
435 PF02333 Phytase: Phytase; In 94.1 8.8 0.00019 40.2 21.7 199 142-345 58-291 (381)
436 PRK10115 protease 2; Provision 94.0 15 0.00034 42.6 33.8 114 182-299 127-256 (686)
437 PHA03098 kelch-like protein; P 93.9 3.2 7E-05 46.9 18.6 187 20-214 289-514 (534)
438 TIGR03118 PEPCTERM_chp_1 conse 93.8 8 0.00017 38.6 22.1 85 434-525 210-307 (336)
439 PF08728 CRT10: CRT10; InterP 93.8 2.3 4.9E-05 48.1 16.1 74 181-254 163-245 (717)
440 PF10168 Nup88: Nuclear pore c 93.7 11 0.00023 43.7 21.9 76 181-257 84-181 (717)
441 KOG1916 Nuclear protein, conta 93.7 0.018 3.8E-07 63.9 -0.2 199 89-296 128-372 (1283)
442 PLN00033 photosystem II stabil 93.4 13 0.00028 39.8 32.1 149 184-341 241-396 (398)
443 COG3823 Glutamine cyclotransfe 93.4 6.1 0.00013 36.9 15.2 173 102-287 55-247 (262)
444 KOG1898 Splicing factor 3b, su 93.3 20 0.00044 41.8 36.6 107 514-620 536-663 (1205)
445 KOG3616 Selective LIM binding 92.9 4.1 8.9E-05 45.0 15.7 71 554-629 334-404 (1636)
446 PF14870 PSII_BNR: Photosynthe 92.8 13 0.00027 38.0 31.4 145 472-620 142-296 (302)
447 KOG2377 Uncharacterized conser 92.7 7.8 0.00017 40.6 16.7 118 424-547 66-187 (657)
448 COG5167 VID27 Protein involved 92.7 2.4 5.2E-05 44.8 13.1 137 156-298 485-632 (776)
449 KOG2280 Vacuolar assembly/sort 92.7 11 0.00023 42.3 18.5 62 515-585 216-278 (829)
450 PF14727 PHTB1_N: PTHB1 N-term 92.4 18 0.00038 38.8 32.2 177 436-626 145-357 (418)
451 PF13449 Phytase-like: Esteras 92.2 8.2 0.00018 40.3 17.0 155 473-628 18-248 (326)
452 KOG1896 mRNA cleavage and poly 91.9 33 0.00073 40.8 41.9 147 437-587 1047-1213(1366)
453 PF07569 Hira: TUP1-like enhan 91.7 0.85 1.8E-05 44.2 8.4 63 565-629 18-95 (219)
454 PF14779 BBS1: Ciliary BBSome 91.6 12 0.00025 36.9 15.9 136 25-166 29-255 (257)
455 PF08801 Nucleoporin_N: Nup133 91.4 11 0.00023 41.2 17.6 167 60-256 29-220 (422)
456 PF13449 Phytase-like: Esteras 91.2 21 0.00046 37.2 21.8 161 425-586 20-248 (326)
457 PF10433 MMS1_N: Mono-function 91.2 30 0.00064 38.8 37.9 420 153-608 2-503 (504)
458 PF10313 DUF2415: Uncharacteri 91.1 1 2.2E-05 30.1 5.6 32 182-213 1-35 (43)
459 COG5167 VID27 Protein involved 91.1 3.2 7E-05 43.9 12.0 142 434-587 477-632 (776)
460 PF07569 Hira: TUP1-like enhan 91.1 2.7 5.9E-05 40.7 11.2 79 510-591 7-99 (219)
461 KOG2247 WD40 repeat-containing 90.9 0.039 8.4E-07 57.3 -1.7 139 141-287 38-177 (615)
462 COG4590 ABC-type uncharacteriz 90.9 1.4 3.1E-05 45.6 9.2 163 472-637 218-394 (733)
463 KOG2247 WD40 repeat-containing 90.9 0.026 5.6E-07 58.5 -3.0 146 185-339 38-183 (615)
464 PHA02790 Kelch-like protein; P 90.7 12 0.00026 41.5 17.4 93 239-336 274-373 (480)
465 KOG3616 Selective LIM binding 90.5 9.2 0.0002 42.5 15.1 80 472-554 335-414 (1636)
466 PF14761 HPS3_N: Hermansky-Pud 90.4 16 0.00036 34.6 15.6 144 478-628 21-213 (215)
467 COG4257 Vgb Streptogramin lyas 90.3 19 0.00042 35.3 23.5 261 224-566 61-325 (353)
468 COG3823 Glutamine cyclotransfe 90.2 16 0.00035 34.2 15.1 172 22-200 52-247 (262)
469 PF14761 HPS3_N: Hermansky-Pud 89.9 12 0.00026 35.5 13.7 103 528-633 29-167 (215)
470 TIGR02276 beta_rpt_yvtn 40-res 89.6 1.7 3.6E-05 29.0 6.1 41 567-607 1-42 (42)
471 PF10395 Utp8: Utp8 family; I 89.5 42 0.00092 37.9 22.0 151 473-629 128-305 (670)
472 PF10313 DUF2415: Uncharacteri 89.4 1.6 3.4E-05 29.3 5.4 33 225-257 1-35 (43)
473 PF14781 BBS2_N: Ciliary BBSom 89.3 14 0.0003 32.1 13.6 120 432-553 6-133 (136)
474 KOG1900 Nuclear pore complex, 88.7 6.6 0.00014 46.8 13.4 139 159-300 97-274 (1311)
475 KOG4460 Nuclear pore complex, 88.7 11 0.00024 40.2 13.7 29 424-452 103-131 (741)
476 PHA02790 Kelch-like protein; P 88.5 29 0.00063 38.5 18.2 180 24-214 270-473 (480)
477 TIGR03606 non_repeat_PQQ dehyd 88.4 42 0.0009 36.5 31.7 72 526-601 368-446 (454)
478 PF02333 Phytase: Phytase; In 87.8 40 0.00086 35.5 21.1 197 391-596 69-300 (381)
479 PF11635 Med16: Mediator compl 87.7 54 0.0012 38.7 20.4 76 424-499 259-345 (753)
480 COG4257 Vgb Streptogramin lyas 87.6 30 0.00065 34.0 22.8 235 181-505 61-306 (353)
481 TIGR03606 non_repeat_PQQ dehyd 87.2 49 0.0011 36.0 19.3 101 475-577 30-165 (454)
482 PF10168 Nup88: Nuclear pore c 87.2 25 0.00054 40.8 16.9 28 424-451 84-111 (717)
483 TIGR03547 muta_rot_YjhT mutatr 86.6 46 0.00099 35.0 20.2 124 496-619 168-331 (346)
484 COG4590 ABC-type uncharacteriz 86.4 21 0.00045 37.5 13.8 236 101-344 78-346 (733)
485 PF11725 AvrE: Pathogenicity f 86.0 27 0.00059 43.2 16.5 153 179-345 360-517 (1774)
486 KOG1983 Tomosyn and related SN 85.8 68 0.0015 39.0 20.1 303 179-577 33-348 (993)
487 PF07250 Glyoxal_oxid_N: Glyox 85.3 36 0.00078 33.5 14.6 145 204-352 47-205 (243)
488 PF14781 BBS2_N: Ciliary BBSom 84.9 25 0.00055 30.5 13.7 108 481-591 5-129 (136)
489 PF11715 Nup160: Nucleoporin N 84.7 3.6 7.7E-05 46.7 8.8 71 525-595 156-256 (547)
490 COG5290 IkappaB kinase complex 84.7 47 0.001 37.7 16.3 37 6-42 104-140 (1243)
491 PF11635 Med16: Mediator compl 84.2 67 0.0014 37.9 19.0 68 515-582 259-345 (753)
492 COG5290 IkappaB kinase complex 84.0 71 0.0015 36.4 17.2 92 475-567 247-346 (1243)
493 TIGR03548 mutarot_permut cycli 83.1 63 0.0014 33.6 19.7 107 435-548 72-197 (323)
494 smart00036 CNH Domain found in 82.8 61 0.0013 33.3 28.0 227 27-264 14-279 (302)
495 TIGR03547 muta_rot_YjhT mutatr 82.5 69 0.0015 33.7 21.9 41 247-288 168-209 (346)
496 PLN02153 epithiospecifier prot 82.2 70 0.0015 33.6 20.4 238 97-337 27-326 (341)
497 PRK14131 N-acetylneuraminic ac 82.0 76 0.0016 33.9 21.8 240 153-461 42-375 (376)
498 PF10395 Utp8: Utp8 family; I 81.9 99 0.0021 35.1 22.8 111 144-257 34-161 (670)
499 smart00036 CNH Domain found in 81.3 69 0.0015 32.9 30.4 102 193-298 13-131 (302)
500 PF03022 MRJP: Major royal jel 81.2 67 0.0015 32.7 23.2 187 427-616 3-253 (287)
No 1
>KOG1539 consensus WD repeat protein [General function prediction only]
Probab=100.00 E-value=1.4e-140 Score=1090.04 Aligned_cols=785 Identities=45% Similarity=0.764 Sum_probs=724.1
Q ss_pred CcccccceeeeEecCCcceEEEEcCCeEEEEEEcCCeEEEEEcCccEEEEecCCCCCCcEEEEEeCCeEEEEECCeEEEE
Q 003579 1 MGIFEPYKAIGYITSSVPFSVQRLGTENFVTVSVGKAFHIYNCAKLNLVLVGPQLPKKIRALASYRDYTFAAYGNHIAVV 80 (809)
Q Consensus 1 ~~~~~p~r~~g~vs~~v~~~~~~~~~~~~i~~~~~~~i~iwd~~~~~~~~~~~~~~~~I~~la~~~~~~~~a~g~~i~vw 80 (809)
|.||+|||+||+|+++|||.+..+++++++++|+|+++++||+++++++++++.++..|+|+|.+.+++|+|+|+.|++|
T Consensus 21 S~iFapfR~lG~vsn~VP~~~~~~~~~~~vtt~vgksfqvYd~~kl~ll~vs~~lp~~I~alas~~~~vy~A~g~~i~~~ 100 (910)
T KOG1539|consen 21 SDIFAPFRALGYVSNGVPFRVVALGSTFYVTTCVGKSFQVYDVNKLNLLFVSKPLPDKITALASDKDYVYVASGNKIYAY 100 (910)
T ss_pred cccccchhhhceecCCCceeeeecCceEEEEEecCceEEEEeccceEEEEecCCCCCceEEEEecCceEEEecCcEEEEE
Confidence 46999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ECCeeEEE-EccccccEEEEEEeCCEEEEEeCCCcEEEEEcCCC-ccccceeeeEEcCCccccEEEEeCCCCCCEEEEEe
Q 003579 81 KRAHQVAT-WSRHSAKVNLLLLFGEHILSIDIDGNMFIWAFKGI-EENLAPVGHVKLDDKFTPTCIMHPDTYLNKVIVGS 158 (809)
Q Consensus 81 ~~~~~~~~-~~~h~~~V~~l~~~g~~l~s~~~dg~i~vWd~~~~-~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~l~~~~ 158 (809)
.+++.+.. +.+|.+.|.-+.++|++|+++..++.+.||+..+. +.......-.+....+ ++.++||++|+|+|++|+
T Consensus 101 ~rgk~i~~~~~~~~a~v~~l~~fGe~lia~d~~~~l~vw~~s~~~~e~~l~~~~~~~~~~~-Ital~HP~TYLNKIvvGs 179 (910)
T KOG1539|consen 101 ARGKHIRHTTLLHGAKVHLLLPFGEHLIAVDISNILFVWKTSSIQEELYLQSTFLKVEGDF-ITALLHPSTYLNKIVVGS 179 (910)
T ss_pred EccceEEEEeccccceEEEEeeecceEEEEEccCcEEEEEeccccccccccceeeeccCCc-eeeEecchhheeeEEEee
Confidence 99977666 89999999999999999999999999999999985 2211112233334444 788999999999999999
Q ss_pred CCCeEEEEeCCCCceEEEEcCCCCCEEEEEEcCCCCEEEEEeCCCeEEEEEeeCCeEEEEEeccCCCcEEEEEEecCCCC
Q 003579 159 QEGSLQLWNISTKKKLYEFKGWGSSISSCVSSPALDVVAVGCSDGKIHVHNVRYDEELVTFTHSMRGAVTALAFSSDGQP 238 (809)
Q Consensus 159 ~dg~i~lwd~~~~~~~~~~~~~~~~I~~l~~sp~~~~la~g~~dg~i~iwd~~~~~~~~~~~~~~~~~V~~l~fs~dg~~ 238 (809)
.+|.+++||+++++.+++|+++...|+++..+|.-+++|+|..+|+|.++|++.++.+++|++. .++|++++|+.||++
T Consensus 180 ~~G~lql~Nvrt~K~v~~f~~~~s~IT~ieqsPaLDVVaiG~~~G~ViifNlK~dkil~sFk~d-~g~VtslSFrtDG~p 258 (910)
T KOG1539|consen 180 SQGRLQLWNVRTGKVVYTFQEFFSRITAIEQSPALDVVAIGLENGTVIIFNLKFDKILMSFKQD-WGRVTSLSFRTDGNP 258 (910)
T ss_pred cCCcEEEEEeccCcEEEEecccccceeEeccCCcceEEEEeccCceEEEEEcccCcEEEEEEcc-ccceeEEEeccCCCe
Confidence 9999999999999999999999999999999999999999999999999999999999999987 799999999999999
Q ss_pred EEEEEcCCCcEEEEECCCceeeeeeecccccceEEEEEecCCCEEEEEcCCCcEEEEEeeCCCCCceeEEeccCCCCCCe
Q 003579 239 LLASGASSGVISIWNLEKRRLQSVIREAHDNAIISLHFFANEPVLMSASADNSIKMWIFDTTDGDPRLLRFRSGHSAPPL 318 (809)
Q Consensus 239 ~lasg~~dg~I~iwdl~~~~~~~~~~~~h~~~V~~l~~~~~~~~l~s~s~d~~i~vw~~~~~~~~~~~~~~~~~h~~~v~ 318 (809)
+||+|+..|.+.+||++..+++..++.+|.+.|....|.|..+.+++++.|+++++|-+|++++.+++++.+.||..|+.
T Consensus 259 ~las~~~~G~m~~wDLe~kkl~~v~~nah~~sv~~~~fl~~epVl~ta~~DnSlk~~vfD~~dg~pR~LR~R~GHs~Pp~ 338 (910)
T KOG1539|consen 259 LLASGRSNGDMAFWDLEKKKLINVTRNAHYGSVTGATFLPGEPVLVTAGADNSLKVWVFDSGDGVPRLLRSRGGHSAPPS 338 (910)
T ss_pred eEEeccCCceEEEEEcCCCeeeeeeeccccCCcccceecCCCceEeeccCCCceeEEEeeCCCCcchheeeccCCCCCch
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred eEEEec-CCCEEEEEECCCCEEEEEeeecccceecchhhHHHHHhhccch-hhhhccCceeEEeeccccccccceeEEee
Q 003579 319 CIRFYA-NGRHILSAGQDRAFRLFSVIQDQQSRELSQRHVAKRARKLKMK-EEELKLKPVIAFDCAEIRERDWCNVVTCH 396 (809)
Q Consensus 319 ~i~~~~-~~~~l~s~~~dg~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~i~~~~~~~~~~~~~~~~~~~~ 396 (809)
|++|+. +|.++++++.|++++.+++....+.+++.+.+..+++++.+.. ....+++||..+++...|+.+|++++++|
T Consensus 339 ~irfy~~~g~~ilsa~~Drt~r~fs~~~e~~~~~l~~~~~~~~~kk~~~~~~~~~k~p~i~~fa~~~~RE~~W~Nv~~~h 418 (910)
T KOG1539|consen 339 CIRFYGSQGHFILSAKQDRTLRSFSVISESQSQELGQLHNKKRAKKVNVFSTEKLKLPPIVEFAFENAREKEWDNVITAH 418 (910)
T ss_pred heeeeccCcEEEEecccCcchhhhhhhHHHHhHhhcccccccccccccccchhhhcCCcceeeecccchhhhhcceeEEe
Confidence 999995 8999999999999999999999999999997777777888777 88999999999999999999999999999
Q ss_pred cCCceEEEEEeeeeeecceeeecCCCC--CCCeEEEEEcCCCCEEEEEeCCCcEEEEECCCCceeeeeeCcccccccCcc
Q 003579 397 MDTAQAYVWRLQNFVLGEHILRPCPEN--PTAVKACTISACGNFAVLGTAGGWIERFNLQSGISRGSYLDMSERSNYAHN 474 (809)
Q Consensus 397 ~~~~~~~~w~~~~~~~~~~~~~~~~~~--~~~v~~v~~s~~g~~l~~g~~~g~i~i~~~~~~~~~~~~~~~~~~~~~~h~ 474 (809)
.++..+++|++++...|++.+.+.... ...++++++++||||.++|++.|.|.+||+|+|.++..|.. .+.|.
T Consensus 419 ~~~~~~~tW~~~n~~~G~~~L~~~~~~~~~~~~~av~vs~CGNF~~IG~S~G~Id~fNmQSGi~r~sf~~-----~~ah~ 493 (910)
T KOG1539|consen 419 KGKRSAYTWNFRNKTSGRHVLDPKRFKKDDINATAVCVSFCGNFVFIGYSKGTIDRFNMQSGIHRKSFGD-----SPAHK 493 (910)
T ss_pred cCcceEEEEeccCcccccEEecCccccccCcceEEEEEeccCceEEEeccCCeEEEEEcccCeeeccccc-----Ccccc
Confidence 999999999999999999999987544 36789999999999999999999999999999999999952 24899
Q ss_pred ccEEEEEEcCCCCEEEEEeCcCeEEEEECCCCceeeeeecCCCeEEEEEeeCCCEEEEEeCCCeEEEEEcCCCeEEEEEe
Q 003579 475 GEVVGVACDSTNTLMISAGYHGDIKVWDFKGRDLKSRWEVGCSLVKIVYHRVNGLLATVADDLVIRLFDVVALRMVRKFE 554 (809)
Q Consensus 475 ~~v~~l~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~i~~~~~s~~~~~la~~~~d~~I~v~d~~~~~~~~~~~ 554 (809)
++|++++.+..++.+++++.+|.+++||+++..++..+.....+.++.++....++|++++|..|+++|..+.+.++.|.
T Consensus 494 ~~V~gla~D~~n~~~vsa~~~Gilkfw~f~~k~l~~~l~l~~~~~~iv~hr~s~l~a~~~ddf~I~vvD~~t~kvvR~f~ 573 (910)
T KOG1539|consen 494 GEVTGLAVDGTNRLLVSAGADGILKFWDFKKKVLKKSLRLGSSITGIVYHRVSDLLAIALDDFSIRVVDVVTRKVVREFW 573 (910)
T ss_pred CceeEEEecCCCceEEEccCcceEEEEecCCcceeeeeccCCCcceeeeeehhhhhhhhcCceeEEEEEchhhhhhHHhh
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cCCCCeeeEEECCCCCEEEEEeCCCeEEEEEcCCccEEEEeeeCcceEEEEEcCCCCeEEEEEeCCCeEEEeecCcccCC
Q 003579 555 GHTDRITDFCFSEDGKWLLSSGMDGSLRIWDVILARQIDAIHVDVSITALSLSPNMDVLATAHVDQNGVYLWVNRCMFSG 634 (809)
Q Consensus 555 ~h~~~I~~l~fspdg~~l~s~s~D~~I~vwd~~~~~~i~~~~~~~~v~~l~~spdg~~lat~~~d~~~i~lW~~~~~~~~ 634 (809)
||.++|++++|||||+||+++++|++||+||++++.+++.+..+.+++++.|||+|+||||+|.|+++|++|.|+++|..
T Consensus 574 gh~nritd~~FS~DgrWlisasmD~tIr~wDlpt~~lID~~~vd~~~~sls~SPngD~LAT~Hvd~~gIylWsNkslF~~ 653 (910)
T KOG1539|consen 574 GHGNRITDMTFSPDGRWLISASMDSTIRTWDLPTGTLIDGLLVDSPCTSLSFSPNGDFLATVHVDQNGIYLWSNKSLFKS 653 (910)
T ss_pred ccccceeeeEeCCCCcEEEEeecCCcEEEEeccCcceeeeEecCCcceeeEECCCCCEEEEEEecCceEEEEEchhHhee
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCCccCCCCCcceeecCCCccCcCCccCCCCCCCCCccCCCCCCCCCCCCCccccccCceeccCCchhhHhhccchHhh
Q 003579 635 DSNIDSYASGKEIVSVKMPSVSSVEGCQDENSSQPDVHRTDRVPKDSFGLPTFKQQIPDLVTLSLLPKSQWQSLINLDII 714 (809)
Q Consensus 635 ~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~tls~~p~~~~~~l~~l~~i 714 (809)
++++ .++.++.+..+.+|+++++.+++++. +. -+.+ +++..|.+++|++++|+|||.||+||||+|+|||+|
T Consensus 654 vs~r-~~~~~~~~~~v~lPst~~~~d~e~~~-----~t-LE~~-~e~i~y~~~eQldeeLvTlS~lp~Srwq~Ll~LelI 725 (910)
T KOG1539|consen 654 VSTR-AIPADYVPSWVMLPSTCDEDDDEDDE-----VT-LESN-DEDIKYSSPEQLDEELVTLSKLPRSRWQNLLNLELI 725 (910)
T ss_pred cccc-ccCcccccceeecCcccccccchhhh-----hh-hhcc-ccccccCChhHhChhhhhhccCcHHHhhhcccHHHH
Confidence 9998 99999999999999987665443221 11 1111 223589999999999999999999999999999999
Q ss_pred hhhCCCCCCCCCCCCCCcccccCC--CCCcc-cccCCCCCcccc------ccccccchhHHHHhcCCccCcccchhhHHH
Q 003579 715 KARNKPIEPPKKPEKAPFFLPSVP--SLSGE-ILFKPSESTKED------TESLKFQHLLIILKVCPHLLWIWNFECFRS 785 (809)
Q Consensus 715 ~~r~kp~~~~~~~~~~pffl~~~~--~~~~~-~~~~~~~~~~~~------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 785 (809)
|+||||+||||+||+||||||+++ |++++ ...++..+++.+ +.++++|.|+++|+++.++.|| .++|++
T Consensus 726 k~RnkPke~PK~pkkaPFFLp~~~s~g~v~e~~~~~~~~~~~~~~~ik~~~~L~~es~F~~~Lre~~~s~~~--~~~~~~ 803 (910)
T KOG1539|consen 726 KKRNKPKEPPKKPKKAPFFLPKVPSEGLVLETPAAEELNKEEDENKIKKLGLLELESSFTTLLREGKDSKDF--LDAFAL 803 (910)
T ss_pred HhcCCCCCCCCccccCCcccccCCcccccccCcchhhhcchhhhhhhhccccccccchHHHHHhhccccccH--HHHHHH
Confidence 999999999999999999999999 44444 333333333222 4446899999999999999999 999999
Q ss_pred HHhhhhhhhcccceEEEee
Q 003579 786 LIMMITKNLIKDLSIYRLN 804 (809)
Q Consensus 786 ~~~~~~~~~~~~~~~~~~~ 804 (809)
|++|+|.++ |+|||+||
T Consensus 804 L~~~~psai--D~eiRsL~ 820 (910)
T KOG1539|consen 804 LKNLSPSAI--DFEIRSLN 820 (910)
T ss_pred HHhcCcchh--eeehhhhh
Confidence 999999999 99999994
No 2
>KOG0319 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification]
Probab=100.00 E-value=1.2e-54 Score=445.86 Aligned_cols=568 Identities=19% Similarity=0.291 Sum_probs=472.6
Q ss_pred cCCeEEEEEEcCCeEEEEEcCccEE-EEec-CCCCCCcEEEEEeCCeEEEEECC--e-EEEEE--CCeeEEEEcc-cccc
Q 003579 24 LGTENFVTVSVGKAFHIYNCAKLNL-VLVG-PQLPKKIRALASYRDYTFAAYGN--H-IAVVK--RAHQVATWSR-HSAK 95 (809)
Q Consensus 24 ~~~~~~i~~~~~~~i~iwd~~~~~~-~~~~-~~~~~~I~~la~~~~~~~~a~g~--~-i~vw~--~~~~~~~~~~-h~~~ 95 (809)
++++++++.+ +..|.+-|+.+++. +... +..+..|+++++.||..++.+.. . +++|+ +++.++.++. |++|
T Consensus 29 ~nG~~L~t~~-~d~Vi~idv~t~~~~l~s~~~ed~d~ita~~l~~d~~~L~~a~rs~llrv~~L~tgk~irswKa~He~P 107 (775)
T KOG0319|consen 29 SNGQHLYTAC-GDRVIIIDVATGSIALPSGSNEDEDEITALALTPDEEVLVTASRSQLLRVWSLPTGKLIRSWKAIHEAP 107 (775)
T ss_pred CCCCEEEEec-CceEEEEEccCCceecccCCccchhhhheeeecCCccEEEEeeccceEEEEEcccchHhHhHhhccCCC
Confidence 5566666555 45688889999877 3333 66788999999999966554432 2 88886 4666777777 9999
Q ss_pred EEEEEEe--CCEEEEEeCCCcEEEEEcCCCccccceeeeEEcCCccccEEEEeCCCCCCEEEEEeCCCeEEEEeCCCCce
Q 003579 96 VNLLLLF--GEHILSIDIDGNMFIWAFKGIEENLAPVGHVKLDDKFTPTCIMHPDTYLNKVIVGSQEGSLQLWNISTKKK 173 (809)
Q Consensus 96 V~~l~~~--g~~l~s~~~dg~i~vWd~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~l~~~~~dg~i~lwd~~~~~~ 173 (809)
|..++++ |..|++|+.||.++|||+..+.+ ...++.+++.+....|+|......|++|..|+.+++||+.+...
T Consensus 108 vi~ma~~~~g~LlAtggaD~~v~VWdi~~~~~----th~fkG~gGvVssl~F~~~~~~~lL~sg~~D~~v~vwnl~~~~t 183 (775)
T KOG0319|consen 108 VITMAFDPTGTLLATGGADGRVKVWDIKNGYC----THSFKGHGGVVSSLLFHPHWNRWLLASGATDGTVRVWNLNDKRT 183 (775)
T ss_pred eEEEEEcCCCceEEeccccceEEEEEeeCCEE----EEEecCCCceEEEEEeCCccchhheeecCCCceEEEEEcccCch
Confidence 9999985 77899999999999999999988 78899999999999999998667799999999999999986554
Q ss_pred -EEEEcCCCCCEEEEEEcCCCCEEEEEeCCCeEEEEEeeCCeEEEEEeccCCCcEEEEEEecC-----CCCEEEEEcCCC
Q 003579 174 -LYEFKGWGSSISSCVSSPALDVVAVGCSDGKIHVHNVRYDEELVTFTHSMRGAVTALAFSSD-----GQPLLASGASSG 247 (809)
Q Consensus 174 -~~~~~~~~~~I~~l~~sp~~~~la~g~~dg~i~iwd~~~~~~~~~~~~~~~~~V~~l~fs~d-----g~~~lasg~~dg 247 (809)
++.+..|.+.|++++|++|+..+++++.|..+.|||+...+...++.. ...+.++.+-++ |. ++.+++.+|
T Consensus 184 cl~~~~~H~S~vtsL~~~~d~~~~ls~~RDkvi~vwd~~~~~~l~~lp~--ye~~E~vv~l~~~~~~~~~-~~~TaG~~g 260 (775)
T KOG0319|consen 184 CLHTMILHKSAVTSLAFSEDSLELLSVGRDKVIIVWDLVQYKKLKTLPL--YESLESVVRLREELGGKGE-YIITAGGSG 260 (775)
T ss_pred HHHHHHhhhhheeeeeeccCCceEEEeccCcEEEEeehhhhhhhheech--hhheeeEEEechhcCCcce-EEEEecCCc
Confidence 888999999999999999999999999999999999987777777765 356788888877 55 888999999
Q ss_pred cEEEEECCCceeeeeeecccccceEEEEEecCCCEEEEEcCCCcEEEEEeeCCCCCceeEEeccCCCCCCeeEEEec-CC
Q 003579 248 VISIWNLEKRRLQSVIREAHDNAIISLHFFANEPVLMSASADNSIKMWIFDTTDGDPRLLRFRSGHSAPPLCIRFYA-NG 326 (809)
Q Consensus 248 ~I~iwdl~~~~~~~~~~~~h~~~V~~l~~~~~~~~l~s~s~d~~i~vw~~~~~~~~~~~~~~~~~h~~~v~~i~~~~-~~ 326 (809)
.+++||.++++++...+......+..+...+....++....|..+.++|.+.. ++.+.+-|..+.|..++|.. +.
T Consensus 261 ~~~~~d~es~~~~~~~~~~~~~e~~~~~~~~~~~~~l~vtaeQnl~l~d~~~l----~i~k~ivG~ndEI~Dm~~lG~e~ 336 (775)
T KOG0319|consen 261 VVQYWDSESGKCVYKQRQSDSEEIDHLLAIESMSQLLLVTAEQNLFLYDEDEL----TIVKQIVGYNDEILDMKFLGPEE 336 (775)
T ss_pred eEEEEecccchhhhhhccCCchhhhcceeccccCceEEEEccceEEEEEcccc----EEehhhcCCchhheeeeecCCcc
Confidence 99999999998877666333444777777777777778888999999987765 67788889999999999975 67
Q ss_pred CEEEEEECCCCEEEEEeeecccceecchhhHHHHHhhccchhhhhccCceeEEeeccccccccceeEEeecCCceEEEEE
Q 003579 327 RHILSAGQDRAFRLFSVIQDQQSRELSQRHVAKRARKLKMKEEELKLKPVIAFDCAEIRERDWCNVVTCHMDTAQAYVWR 406 (809)
Q Consensus 327 ~~l~s~~~dg~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~ 406 (809)
++++.++..+.+|+|++.+..+. +-.++.. .+.+++ .. .-..++.....+..+++|.
T Consensus 337 ~~laVATNs~~lr~y~~~~~~c~--ii~GH~e----------------~vlSL~--~~---~~g~llat~sKD~svilWr 393 (775)
T KOG0319|consen 337 SHLAVATNSPELRLYTLPTSYCQ--IIPGHTE----------------AVLSLD--VW---SSGDLLATGSKDKSVILWR 393 (775)
T ss_pred ceEEEEeCCCceEEEecCCCceE--EEeCchh----------------heeeee--ec---ccCcEEEEecCCceEEEEE
Confidence 89999999999999987665543 2222211 122222 00 1114677777889999999
Q ss_pred eeeeeecceeeecCCCCCCCeEEEEEcCCC-CEEEEEeCCCcEEEEECCCCceeeeee-CcccccccCccccEEEEEEcC
Q 003579 407 LQNFVLGEHILRPCPENPTAVKACTISACG-NFAVLGTAGGWIERFNLQSGISRGSYL-DMSERSNYAHNGEVVGVACDS 484 (809)
Q Consensus 407 ~~~~~~~~~~~~~~~~~~~~v~~v~~s~~g-~~l~~g~~~g~i~i~~~~~~~~~~~~~-~~~~~~~~~h~~~v~~l~~~~ 484 (809)
+++............+|...|.+++++..+ .++++++.|+++++|++...+...... .........|...|++++++|
T Consensus 394 ~~~~~~~~~~~a~~~gH~~svgava~~~~~asffvsvS~D~tlK~W~l~~s~~~~~~~~~~~~~t~~aHdKdIN~Vaia~ 473 (775)
T KOG0319|consen 394 LNNNCSKSLCVAQANGHTNSVGAVAGSKLGASFFVSVSQDCTLKLWDLPKSKETAFPIVLTCRYTERAHDKDINCVAIAP 473 (775)
T ss_pred ecCCcchhhhhhhhcccccccceeeecccCccEEEEecCCceEEEecCCCcccccccceehhhHHHHhhcccccceEecC
Confidence 977666666677778999999999997765 789999999999999998733222211 001112358999999999999
Q ss_pred CCCEEEEEeCcCeEEEEECCCCceeeeeecC-CCeEEEEEeeCCCEEEEEeCCCeEEEEEcCCCeEEEEEecCCCCeeeE
Q 003579 485 TNTLMISAGYHGDIKVWDFKGRDLKSRWEVG-CSLVKIVYHRVNGLLATVADDLVIRLFDVVALRMVRKFEGHTDRITDF 563 (809)
Q Consensus 485 ~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~-~~i~~~~~s~~~~~la~~~~d~~I~v~d~~~~~~~~~~~~h~~~I~~l 563 (809)
+.++++||+.|.+.++|++....+..++..+ ..+.++.|+|..+.+|+++.|++|+||.+.+..++++|.||+..|..+
T Consensus 474 ndkLiAT~SqDktaKiW~le~~~l~~vLsGH~RGvw~V~Fs~~dq~laT~SgD~TvKIW~is~fSClkT~eGH~~aVlra 553 (775)
T KOG0319|consen 474 NDKLIATGSQDKTAKIWDLEQLRLLGVLSGHTRGVWCVSFSKNDQLLATCSGDKTVKIWSISTFSCLKTFEGHTSAVLRA 553 (775)
T ss_pred CCceEEecccccceeeecccCceEEEEeeCCccceEEEEeccccceeEeccCCceEEEEEeccceeeeeecCccceeEee
Confidence 9999999999999999999999999999877 899999999999999999999999999999999999999999999999
Q ss_pred EECCCCCEEEEEeCCCeEEEEEcCCccEEEEeeeCcc-eEEEEEcCCCCeEEEEEeCCCeEEEee
Q 003579 564 CFSEDGKWLLSSGMDGSLRIWDVILARQIDAIHVDVS-ITALSLSPNMDVLATAHVDQNGVYLWV 627 (809)
Q Consensus 564 ~fspdg~~l~s~s~D~~I~vwd~~~~~~i~~~~~~~~-v~~l~~spdg~~lat~~~d~~~i~lW~ 627 (809)
.|-.+|+.|+|++.||.|++|++.++.|+..+..|.. |++++-+|.+.+++||+.|+. |.+|.
T Consensus 554 ~F~~~~~qliS~~adGliKlWnikt~eC~~tlD~H~DrvWaL~~~~~~~~~~tgg~Dg~-i~~wk 617 (775)
T KOG0319|consen 554 SFIRNGKQLISAGADGLIKLWNIKTNECEMTLDAHNDRVWALSVSPLLDMFVTGGGDGR-IIFWK 617 (775)
T ss_pred eeeeCCcEEEeccCCCcEEEEeccchhhhhhhhhccceeEEEeecCccceeEecCCCeE-EEEee
Confidence 9999999999999999999999999999999987765 999999999999999999995 99997
No 3
>KOG0291 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification]
Probab=100.00 E-value=9.1e-52 Score=424.70 Aligned_cols=525 Identities=16% Similarity=0.287 Sum_probs=442.7
Q ss_pred cCCeEEEEEEcCCeEEEEEcCccEEEEecCCCCCCcEEEEEeCCeEEEEE--CCeEEEEECCeeEE----------EEcc
Q 003579 24 LGTENFVTVSVGKAFHIYNCAKLNLVLVGPQLPKKIRALASYRDYTFAAY--GNHIAVVKRAHQVA----------TWSR 91 (809)
Q Consensus 24 ~~~~~~i~~~~~~~i~iwd~~~~~~~~~~~~~~~~I~~la~~~~~~~~a~--g~~i~vw~~~~~~~----------~~~~ 91 (809)
+++.+++++...|...+-+......++... ...+|.|+.||||++++|. |+.+.||..++.+. ++.|
T Consensus 65 p~g~lllavdE~g~~~lvs~~~r~Vlh~f~-fk~~v~~i~fSPng~~fav~~gn~lqiw~~P~~~~~~~~pFvl~r~~~g 143 (893)
T KOG0291|consen 65 PDGTLLLAVDERGRALLVSLLSRSVLHRFN-FKRGVGAIKFSPNGKFFAVGCGNLLQIWHAPGEIKNEFNPFVLHRTYLG 143 (893)
T ss_pred CCceEEEEEcCCCcEEEEecccceeeEEEe-ecCccceEEECCCCcEEEEEecceeEEEecCcchhcccCcceEeeeecC
Confidence 567788888888877777777766665553 5889999999999888765 56699998765422 3789
Q ss_pred ccccEEEEEE--eCCEEEEEeCCCcEEEEEcCCCccccceeeeEEcCCccccEEEEeCCCCCCEEEEEeCCCeEEEEeCC
Q 003579 92 HSAKVNLLLL--FGEHILSIDIDGNMFIWAFKGIEENLAPVGHVKLDDKFTPTCIMHPDTYLNKVIVGSQEGSLQLWNIS 169 (809)
Q Consensus 92 h~~~V~~l~~--~g~~l~s~~~dg~i~vWd~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~l~~~~~dg~i~lwd~~ 169 (809)
|...|+++.| |.++|++++.|-++++|.++..+-. ....+..|...+..|.|..+. ..+++.+.||.+.+|...
T Consensus 144 ~fddi~si~Ws~DSr~l~~gsrD~s~rl~~v~~~k~~--~~~~l~gHkd~VvacfF~~~~--~~l~tvskdG~l~~W~~~ 219 (893)
T KOG0291|consen 144 HFDDITSIDWSDDSRLLVTGSRDLSARLFGVDGNKNL--FTYALNGHKDYVVACFFGANS--LDLYTVSKDGALFVWTCD 219 (893)
T ss_pred CccceeEEEeccCCceEEeccccceEEEEEecccccc--ceEeccCCCcceEEEEeccCc--ceEEEEecCceEEEEEec
Confidence 9999999999 6789999999999999999887652 134456688888899999988 789999999999999775
Q ss_pred C-----------------------Cce-----------EEEEcCCCCCEEEEEEcCCCCEEEEEeCCCeEEEEEeeCCeE
Q 003579 170 T-----------------------KKK-----------LYEFKGWGSSISSCVSSPALDVVAVGCSDGKIHVHNVRYDEE 215 (809)
Q Consensus 170 ~-----------------------~~~-----------~~~~~~~~~~I~~l~~sp~~~~la~g~~dg~i~iwd~~~~~~ 215 (809)
. ++. .+-+......|++.+|++..+.||+|..+|...+|.+..-..
T Consensus 220 ~~P~~~~~~~kd~eg~~d~~~~~~~Eek~~~~~~~k~~k~~ln~~~~kvtaa~fH~~t~~lvvgFssG~f~LyelP~f~l 299 (893)
T KOG0291|consen 220 LRPPELDKAEKDEEGSDDEEMDEDGEEKTHKIFWYKTKKHYLNQNSSKVTAAAFHKGTNLLVVGFSSGEFGLYELPDFNL 299 (893)
T ss_pred CCCcccccccccccccccccccccchhhhcceEEEEEEeeeecccccceeeeeccCCceEEEEEecCCeeEEEecCCceE
Confidence 1 111 122333358899999999999999999999999999999999
Q ss_pred EEEEeccCCCcEEEEEEecCCCCEEEEEc-CCCcEEEEECCCceeeeeeecccccceEEEEEecCCCEEEEEcCCCcEEE
Q 003579 216 LVTFTHSMRGAVTALAFSSDGQPLLASGA-SSGVISIWNLEKRRLQSVIREAHDNAIISLHFFANEPVLMSASADNSIKM 294 (809)
Q Consensus 216 ~~~~~~~~~~~V~~l~fs~dg~~~lasg~-~dg~I~iwdl~~~~~~~~~~~~h~~~V~~l~~~~~~~~l~s~s~d~~i~v 294 (809)
++.+... ..+|..++|+..|. .+|.|+ .-|.+.||++.+...+-..+ +|...+++++++|||.++++|+.||.|++
T Consensus 300 ih~LSis-~~~I~t~~~N~tGD-WiA~g~~klgQLlVweWqsEsYVlKQQ-gH~~~i~~l~YSpDgq~iaTG~eDgKVKv 376 (893)
T KOG0291|consen 300 IHSLSIS-DQKILTVSFNSTGD-WIAFGCSKLGQLLVWEWQSESYVLKQQ-GHSDRITSLAYSPDGQLIATGAEDGKVKV 376 (893)
T ss_pred EEEeecc-cceeeEEEecccCC-EEEEcCCccceEEEEEeeccceeeecc-ccccceeeEEECCCCcEEEeccCCCcEEE
Confidence 9999886 67999999999999 778777 45899999999998888888 99999999999999999999999999999
Q ss_pred EEeeCCCCCceeEEeccCCCCCCeeEEEecCCCEEEEEECCCCEEEEEeeecccceecchhhHHHHHhhccchhhhhccC
Q 003579 295 WIFDTTDGDPRLLRFRSGHSAPPLCIRFYANGRHILSAGQDRAFRLFSVIQDQQSRELSQRHVAKRARKLKMKEEELKLK 374 (809)
Q Consensus 295 w~~~~~~~~~~~~~~~~~h~~~v~~i~~~~~~~~l~s~~~dg~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 374 (809)
||...+ -+..++..|...|+.+.|+..|+.+++++-||+|+.||+.....-+.+..
T Consensus 377 Wn~~Sg----fC~vTFteHts~Vt~v~f~~~g~~llssSLDGtVRAwDlkRYrNfRTft~-------------------- 432 (893)
T KOG0291|consen 377 WNTQSG----FCFVTFTEHTSGVTAVQFTARGNVLLSSSLDGTVRAWDLKRYRNFRTFTS-------------------- 432 (893)
T ss_pred EeccCc----eEEEEeccCCCceEEEEEEecCCEEEEeecCCeEEeeeecccceeeeecC--------------------
Confidence 987665 68899999999999999999999999999999999999987766555432
Q ss_pred ceeEEeeccccccccceeEEeecCCceEEEEEeeeeeecceeeecCCCCCCCeEEEEEcCCCCEEEEEeCCC-cEEEEEC
Q 003579 375 PVIAFDCAEIRERDWCNVVTCHMDTAQAYVWRLQNFVLGEHILRPCPENPTAVKACTISACGNFAVLGTAGG-WIERFNL 453 (809)
Q Consensus 375 ~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~v~~v~~s~~g~~l~~g~~~g-~i~i~~~ 453 (809)
..+....|++..|.|..+.+|+.|. .|++|++
T Consensus 433 -----------------------------------------------P~p~QfscvavD~sGelV~AG~~d~F~IfvWS~ 465 (893)
T KOG0291|consen 433 -----------------------------------------------PEPIQFSCVAVDPSGELVCAGAQDSFEIFVWSV 465 (893)
T ss_pred -----------------------------------------------CCceeeeEEEEcCCCCEEEeeccceEEEEEEEe
Confidence 1235678999999999999999886 8999999
Q ss_pred CCCceeeeeeCcccccccCccccEEEEEEcCCCCEEEEEeCcCeEEEEECCC-CceeeeeecCCCeEEEEEeeCCCEEEE
Q 003579 454 QSGISRGSYLDMSERSNYAHNGEVVGVACDSTNTLMISAGYHGDIKVWDFKG-RDLKSRWEVGCSLVKIVYHRVNGLLAT 532 (809)
Q Consensus 454 ~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~l~s~~~dg~i~iwd~~~-~~~~~~~~~~~~i~~~~~s~~~~~la~ 532 (809)
++|+.+..+. +|.++|.+++|+|.+..|++++.|.+||+||+-. .....+++....+..++|+|+|+-||+
T Consensus 466 qTGqllDiLs--------GHEgPVs~l~f~~~~~~LaS~SWDkTVRiW~if~s~~~vEtl~i~sdvl~vsfrPdG~elaV 537 (893)
T KOG0291|consen 466 QTGQLLDILS--------GHEGPVSGLSFSPDGSLLASGSWDKTVRIWDIFSSSGTVETLEIRSDVLAVSFRPDGKELAV 537 (893)
T ss_pred ecCeeeehhc--------CCCCcceeeEEccccCeEEeccccceEEEEEeeccCceeeeEeeccceeEEEEcCCCCeEEE
Confidence 9999999886 9999999999999999999999999999999754 456778888899999999999999999
Q ss_pred EeCCCeEEEEEcCCCeEEEEEec--------------------CCCCeeeEEECCCCCEEEEEeCCCeEEEEEcCCccEE
Q 003579 533 VADDLVIRLFDVVALRMVRKFEG--------------------HTDRITDFCFSEDGKWLLSSGMDGSLRIWDVILARQI 592 (809)
Q Consensus 533 ~~~d~~I~v~d~~~~~~~~~~~~--------------------h~~~I~~l~fspdg~~l~s~s~D~~I~vwd~~~~~~i 592 (809)
+.-||.|.+||.+.+..+..+.| .....+.+++|+||.+|++|++...|++||++++-++
T Consensus 538 aTldgqItf~d~~~~~q~~~IdgrkD~~~gR~~~D~~ta~~sa~~K~Ftti~ySaDG~~IlAgG~sn~iCiY~v~~~vll 617 (893)
T KOG0291|consen 538 ATLDGQITFFDIKEAVQVGSIDGRKDLSGGRKETDRITAENSAKGKTFTTICYSADGKCILAGGESNSICIYDVPEGVLL 617 (893)
T ss_pred EEecceEEEEEhhhceeeccccchhhccccccccceeehhhcccCCceEEEEEcCCCCEEEecCCcccEEEEECchhhee
Confidence 99999999999987766544332 2246889999999999999999999999999887666
Q ss_pred EEeee---------------------------------------------------------CcceEEEEEcCCCCeEEE
Q 003579 593 DAIHV---------------------------------------------------------DVSITALSLSPNMDVLAT 615 (809)
Q Consensus 593 ~~~~~---------------------------------------------------------~~~v~~l~~spdg~~lat 615 (809)
+.++. .-.|.++.|||+|+.+|.
T Consensus 618 kkfqiS~N~sLdg~~efln~rkmtEfG~~~LiD~e~~~~e~~i~~~lpG~~~gdlssRr~rpeIrv~sv~fsPtgraFAa 697 (893)
T KOG0291|consen 618 KKFQISDNRSLDGVLEFLNRRKMTEFGNMDLIDTEESDLEGRIDIALPGVQRGDLSSRRFRPEIRVTSVQFSPTGRAFAA 697 (893)
T ss_pred eeEEeccccchhHHHHHhccccccccCCccccccccccccccccccCCccccCCccccccCceEEEEEEEECCCcCeeee
Confidence 55431 002889999999999999
Q ss_pred EEeCCCeEEEeec--CcccCCCCC
Q 003579 616 AHVDQNGVYLWVN--RCMFSGDSN 637 (809)
Q Consensus 616 ~~~d~~~i~lW~~--~~~~~~~~~ 637 (809)
++..| +.||.+ ...|.|..+
T Consensus 698 atTEG--l~IYsld~~~~FDPf~L 719 (893)
T KOG0291|consen 698 ATTEG--LLIYSLDTTILFDPFDL 719 (893)
T ss_pred ecccc--eEEEecCCceEEccccc
Confidence 99987 667765 445566543
No 4
>KOG0318 consensus WD40 repeat stress protein/actin interacting protein [Cytoskeleton]
Probab=100.00 E-value=5.4e-50 Score=395.95 Aligned_cols=561 Identities=16% Similarity=0.216 Sum_probs=442.6
Q ss_pred CCcceEEEEcCCeEEEEEEcCCeEEEEEcCccEEEEecCCCCCCcEEEEEeCCeEEEEECCe---EEEEECCe---eEE-
Q 003579 15 SSVPFSVQRLGTENFVTVSVGKAFHIYNCAKLNLVLVGPQLPKKIRALASYRDYTFAAYGNH---IAVVKRAH---QVA- 87 (809)
Q Consensus 15 ~~v~~~~~~~~~~~~i~~~~~~~i~iwd~~~~~~~~~~~~~~~~I~~la~~~~~~~~a~g~~---i~vw~~~~---~~~- 87 (809)
.++|..+......--|.++.|+++.+-+++++..+.+...|...++-..++|.|-|+|+|+. |+||+... .++
T Consensus 18 Rg~~~~ig~dpkgd~ilY~nGksv~ir~i~~~~~~~iYtEH~~~vtVAkySPsG~yiASGD~sG~vRIWdtt~~~hiLKn 97 (603)
T KOG0318|consen 18 RGVPIIIGGDPKGDNILYTNGKSVIIRNIDNPASVDIYTEHAHQVTVAKYSPSGFYIASGDVSGKVRIWDTTQKEHILKN 97 (603)
T ss_pred CCcceEeccCCCCCeEEEeCCCEEEEEECCCccceeeeccccceeEEEEeCCCceEEeecCCcCcEEEEeccCcceeeee
Confidence 34555544445556678889999999999999999999999999999999999999999976 99999744 232
Q ss_pred EEccccccEEEEEE--eCCEEEEEeCC----CcEEEEEcCCCccccceeeeEEcCCccccEEEEeCCCCCCEEEEEeCCC
Q 003579 88 TWSRHSAKVNLLLL--FGEHILSIDID----GNMFIWAFKGIEENLAPVGHVKLDDKFTPTCIMHPDTYLNKVIVGSQEG 161 (809)
Q Consensus 88 ~~~~h~~~V~~l~~--~g~~l~s~~~d----g~i~vWd~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~l~~~~~dg 161 (809)
+++.-.++|..|.| ++++|++.++. |.+..|| ++.. +..+..|...+.+|.|-|... -++++|+.|+
T Consensus 98 ef~v~aG~I~Di~Wd~ds~RI~avGEGrerfg~~F~~D--SG~S----vGei~GhSr~ins~~~KpsRP-fRi~T~sdDn 170 (603)
T KOG0318|consen 98 EFQVLAGPIKDISWDFDSKRIAAVGEGRERFGHVFLWD--SGNS----VGEITGHSRRINSVDFKPSRP-FRIATGSDDN 170 (603)
T ss_pred eeeecccccccceeCCCCcEEEEEecCccceeEEEEec--CCCc----cceeeccceeEeeeeccCCCc-eEEEeccCCC
Confidence 27788999999998 58899888753 2355665 4444 678888999999999999876 4899999999
Q ss_pred eEEEEeCCCCceEEEEcCCCCCEEEEEEcCCCCEEEEEeCCCeEEEEEeeCCeEEEEEe--ccCCCcEEEEEEecCCCCE
Q 003579 162 SLQLWNISTKKKLYEFKGWGSSISSCVSSPALDVVAVGCSDGKIHVHNVRYDEELVTFT--HSMRGAVTALAFSSDGQPL 239 (809)
Q Consensus 162 ~i~lwd~~~~~~~~~~~~~~~~I~~l~~sp~~~~la~g~~dg~i~iwd~~~~~~~~~~~--~~~~~~V~~l~fs~dg~~~ 239 (809)
+|.+|+-.-.|.-.++..|..-|.|+.|+|||.++|+++.||.+.+||-++++.+..+. ..|++.|.+++|+||++ .
T Consensus 171 ~v~ffeGPPFKFk~s~r~HskFV~~VRysPDG~~Fat~gsDgki~iyDGktge~vg~l~~~~aHkGsIfalsWsPDs~-~ 249 (603)
T KOG0318|consen 171 TVAFFEGPPFKFKSSFREHSKFVNCVRYSPDGSRFATAGSDGKIYIYDGKTGEKVGELEDSDAHKGSIFALSWSPDST-Q 249 (603)
T ss_pred eEEEeeCCCeeeeecccccccceeeEEECCCCCeEEEecCCccEEEEcCCCccEEEEecCCCCccccEEEEEECCCCc-e
Confidence 99999977778888889999999999999999999999999999999999999999998 24589999999999999 8
Q ss_pred EEEEcCCCcEEEEECCCceeeeeeecccc--cceEEEEEecCCCEEEEEcCCCcEEEEEeeCCCCCceeEEeccCCCCCC
Q 003579 240 LASGASSGVISIWNLEKRRLQSVIREAHD--NAIISLHFFANEPVLMSASADNSIKMWIFDTTDGDPRLLRFRSGHSAPP 317 (809)
Q Consensus 240 lasg~~dg~I~iwdl~~~~~~~~~~~~h~--~~V~~l~~~~~~~~l~s~s~d~~i~vw~~~~~~~~~~~~~~~~~h~~~v 317 (809)
+++++.|.+++|||+.+++++.++..+.. ..-..+-|- ...|++.+.+|.|.+++.+.. ..++.+.||...|
T Consensus 250 ~~T~SaDkt~KIWdVs~~slv~t~~~~~~v~dqqvG~lWq--kd~lItVSl~G~in~ln~~d~----~~~~~i~GHnK~I 323 (603)
T KOG0318|consen 250 FLTVSADKTIKIWDVSTNSLVSTWPMGSTVEDQQVGCLWQ--KDHLITVSLSGTINYLNPSDP----SVLKVISGHNKSI 323 (603)
T ss_pred EEEecCCceEEEEEeeccceEEEeecCCchhceEEEEEEe--CCeEEEEEcCcEEEEecccCC----Chhheecccccce
Confidence 99999999999999999999998874443 344455565 558999999999999976554 3677888999999
Q ss_pred eeEEEecCCCEEEEEECCCCEEEEEeeecccceecchhhHHHHHhhccchhhhhccCceeEEeeccccccccceeEEeec
Q 003579 318 LCIRFYANGRHILSAGQDRAFRLFSVIQDQQSRELSQRHVAKRARKLKMKEEELKLKPVIAFDCAEIRERDWCNVVTCHM 397 (809)
Q Consensus 318 ~~i~~~~~~~~l~s~~~dg~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~ 397 (809)
+++..++++++|++|+.||.|.-|+..++...+.....+ -..|..+.... -..+++++.
T Consensus 324 TaLtv~~d~~~i~SgsyDG~I~~W~~~~g~~~~~~g~~h----------------~nqI~~~~~~~-----~~~~~t~g~ 382 (603)
T KOG0318|consen 324 TALTVSPDGKTIYSGSYDGHINSWDSGSGTSDRLAGKGH----------------TNQIKGMAASE-----SGELFTIGW 382 (603)
T ss_pred eEEEEcCCCCEEEeeccCceEEEEecCCccccccccccc----------------cceEEEEeecC-----CCcEEEEec
Confidence 999999999999999999999999998776554332221 12233333321 234555554
Q ss_pred CCceEEEEEeeeeeecceeeecCCCCCCCeEEEEEcCCCCEEEEEeCCCcEEEEECCCCceeeeeeCcccccccCccccE
Q 003579 398 DTAQAYVWRLQNFVLGEHILRPCPENPTAVKACTISACGNFAVLGTAGGWIERFNLQSGISRGSYLDMSERSNYAHNGEV 477 (809)
Q Consensus 398 ~~~~~~~w~~~~~~~~~~~~~~~~~~~~~v~~v~~s~~g~~l~~g~~~g~i~i~~~~~~~~~~~~~~~~~~~~~~h~~~v 477 (809)
++ .+++.++........... .......+++..++|..+++.+.++.+.+-+.. +.... .-.-..
T Consensus 383 Dd-~l~~~~~~~~~~t~~~~~---~lg~QP~~lav~~d~~~avv~~~~~iv~l~~~~-~~~~~-----------~~~y~~ 446 (603)
T KOG0318|consen 383 DD-TLRVISLKDNGYTKSEVV---KLGSQPKGLAVLSDGGTAVVACISDIVLLQDQT-KVSSI-----------PIGYES 446 (603)
T ss_pred CC-eEEEEecccCccccccee---ecCCCceeEEEcCCCCEEEEEecCcEEEEecCC-cceee-----------cccccc
Confidence 43 445554443332222111 112455589999999888888777655443332 22111 233567
Q ss_pred EEEEEcCCCCEEEEEeCcCeEEEEECCCCcee---eeeecCCCeEEEEEeeCCCEEEEEeCCCeEEEEEcCCCeEEEEEe
Q 003579 478 VGVACDSTNTLMISAGYHGDIKVWDFKGRDLK---SRWEVGCSLVKIVYHRVNGLLATVADDLVIRLFDVVALRMVRKFE 554 (809)
Q Consensus 478 ~~l~~~~~~~~l~s~~~dg~i~iwd~~~~~~~---~~~~~~~~i~~~~~s~~~~~la~~~~d~~I~v~d~~~~~~~~~~~ 554 (809)
.+++++|++..++.|+.||.|++|.+....+. ..+++..+|+.++|+||+.+||++...+.+.+||+.+.+......
T Consensus 447 s~vAv~~~~~~vaVGG~Dgkvhvysl~g~~l~ee~~~~~h~a~iT~vaySpd~~yla~~Da~rkvv~yd~~s~~~~~~~w 526 (603)
T KOG0318|consen 447 SAVAVSPDGSEVAVGGQDGKVHVYSLSGDELKEEAKLLEHRAAITDVAYSPDGAYLAAGDASRKVVLYDVASREVKTNRW 526 (603)
T ss_pred ceEEEcCCCCEEEEecccceEEEEEecCCcccceeeeecccCCceEEEECCCCcEEEEeccCCcEEEEEcccCceeccee
Confidence 89999999999999999999999999986643 345666999999999999999999999999999999998865555
Q ss_pred c-CCCCeeeEEECCCCCEEEEEeCCCeEEEEEcCCccEEEEee--eCcceEEEEEcCCCCeEEEEEeCCCeEEEeec
Q 003579 555 G-HTDRITDFCFSEDGKWLLSSGMDGSLRIWDVILARQIDAIH--VDVSITALSLSPNMDVLATAHVDQNGVYLWVN 628 (809)
Q Consensus 555 ~-h~~~I~~l~fspdg~~l~s~s~D~~I~vwd~~~~~~i~~~~--~~~~v~~l~~spdg~~lat~~~d~~~i~lW~~ 628 (809)
+ |+.+|++++|+|+..++||||.|-+|.||++......-.++ |...|+.+.|- |...|++++.|.+ |++|++
T Consensus 527 ~FHtakI~~~aWsP~n~~vATGSlDt~Viiysv~kP~~~i~iknAH~~gVn~v~wl-de~tvvSsG~Da~-iK~W~v 601 (603)
T KOG0318|consen 527 AFHTAKINCVAWSPNNKLVATGSLDTNVIIYSVKKPAKHIIIKNAHLGGVNSVAWL-DESTVVSSGQDAN-IKVWNV 601 (603)
T ss_pred eeeeeeEEEEEeCCCceEEEeccccceEEEEEccChhhheEeccccccCceeEEEe-cCceEEeccCcce-eEEecc
Confidence 5 99999999999999999999999999999998654332222 23349999996 5567889999994 999986
No 5
>KOG0318 consensus WD40 repeat stress protein/actin interacting protein [Cytoskeleton]
Probab=100.00 E-value=7.3e-49 Score=387.96 Aligned_cols=514 Identities=17% Similarity=0.220 Sum_probs=406.0
Q ss_pred cCCeEEEEEEcCCeEEEEEcCccE--EEEecCCCCCCcEEEEEeCCeEEE-EECCe------EEEEECCeeEEEEccccc
Q 003579 24 LGTENFVTVSVGKAFHIYNCAKLN--LVLVGPQLPKKIRALASYRDYTFA-AYGNH------IAVVKRAHQVATWSRHSA 94 (809)
Q Consensus 24 ~~~~~~i~~~~~~~i~iwd~~~~~--~~~~~~~~~~~I~~la~~~~~~~~-a~g~~------i~vw~~~~~~~~~~~h~~ 94 (809)
+.+.+++++.+.|.++|||..+.. +....+...++|..++++.|++.+ |.|.. +..||.+..+.++.||+.
T Consensus 69 PsG~yiASGD~sG~vRIWdtt~~~hiLKnef~v~aG~I~Di~Wd~ds~RI~avGEGrerfg~~F~~DSG~SvGei~GhSr 148 (603)
T KOG0318|consen 69 PSGFYIASGDVSGKVRIWDTTQKEHILKNEFQVLAGPIKDISWDFDSKRIAAVGEGRERFGHVFLWDSGNSVGEITGHSR 148 (603)
T ss_pred CCceEEeecCCcCcEEEEeccCcceeeeeeeeecccccccceeCCCCcEEEEEecCccceeEEEEecCCCccceeeccce
Confidence 667888888899999999998733 333457789999999999996655 45532 899999999999999999
Q ss_pred cEEEEEEe---CCEEEEEeCCCcEEEEEcCCCccccceeeeEEcCCccccEEEEeCCCCCCEEEEEeCCCeEEEEeCCCC
Q 003579 95 KVNLLLLF---GEHILSIDIDGNMFIWAFKGIEENLAPVGHVKLDDKFTPTCIMHPDTYLNKVIVGSQEGSLQLWNISTK 171 (809)
Q Consensus 95 ~V~~l~~~---g~~l~s~~~dg~i~vWd~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~l~~~~~dg~i~lwd~~~~ 171 (809)
.|.++.+- .-++++|+.|++|.+|+=...+. -.+...|..++..+-++|++ +++++.+.||++.+||-++|
T Consensus 149 ~ins~~~KpsRPfRi~T~sdDn~v~ffeGPPFKF----k~s~r~HskFV~~VRysPDG--~~Fat~gsDgki~iyDGktg 222 (603)
T KOG0318|consen 149 RINSVDFKPSRPFRIATGSDDNTVAFFEGPPFKF----KSSFREHSKFVNCVRYSPDG--SRFATAGSDGKIYIYDGKTG 222 (603)
T ss_pred eEeeeeccCCCceEEEeccCCCeEEEeeCCCeee----eecccccccceeeEEECCCC--CeEEEecCCccEEEEcCCCc
Confidence 99999983 45799999999999998665555 45566788999999999999 89999999999999999999
Q ss_pred ceEEEEc---CCCCCEEEEEEcCCCCEEEEEeCCCeEEEEEeeCCeEEEEEeccCC--CcEEEEEEecCCCCEEEEEcCC
Q 003579 172 KKLYEFK---GWGSSISSCVSSPALDVVAVGCSDGKIHVHNVRYDEELVTFTHSMR--GAVTALAFSSDGQPLLASGASS 246 (809)
Q Consensus 172 ~~~~~~~---~~~~~I~~l~~sp~~~~la~g~~dg~i~iwd~~~~~~~~~~~~~~~--~~V~~l~fs~dg~~~lasg~~d 246 (809)
+.+..+. +|.+.|.+++|+||+..+++++.|.+++|||+.+.+.+.++..... ..-..+-|-. . .|++-+.+
T Consensus 223 e~vg~l~~~~aHkGsIfalsWsPDs~~~~T~SaDkt~KIWdVs~~slv~t~~~~~~v~dqqvG~lWqk--d-~lItVSl~ 299 (603)
T KOG0318|consen 223 EKVGELEDSDAHKGSIFALSWSPDSTQFLTVSADKTIKIWDVSTNSLVSTWPMGSTVEDQQVGCLWQK--D-HLITVSLS 299 (603)
T ss_pred cEEEEecCCCCccccEEEEEECCCCceEEEecCCceEEEEEeeccceEEEeecCCchhceEEEEEEeC--C-eEEEEEcC
Confidence 9999998 8999999999999999999999999999999999999999987643 3344455652 2 68888999
Q ss_pred CcEEEEECCCceeeeeeecccccceEEEEEecCCCEEEEEcCCCcEEEEEeeCCCCCceeEEeccCCCCCCeeEEEecCC
Q 003579 247 GVISIWNLEKRRLQSVIREAHDNAIISLHFFANEPVLMSASADNSIKMWIFDTTDGDPRLLRFRSGHSAPPLCIRFYANG 326 (809)
Q Consensus 247 g~I~iwdl~~~~~~~~~~~~h~~~V~~l~~~~~~~~l~s~s~d~~i~vw~~~~~~~~~~~~~~~~~h~~~v~~i~~~~~~ 326 (809)
|.|.+++......+..+. +|...|+++..++++.+|++|+.||.|.-|+...+... ...-.+|...|.+++-+..+
T Consensus 300 G~in~ln~~d~~~~~~i~-GHnK~ITaLtv~~d~~~i~SgsyDG~I~~W~~~~g~~~---~~~g~~h~nqI~~~~~~~~~ 375 (603)
T KOG0318|consen 300 GTINYLNPSDPSVLKVIS-GHNKSITALTVSPDGKTIYSGSYDGHINSWDSGSGTSD---RLAGKGHTNQIKGMAASESG 375 (603)
T ss_pred cEEEEecccCCChhheec-ccccceeEEEEcCCCCEEEeeccCceEEEEecCCcccc---ccccccccceEEEEeecCCC
Confidence 999999999999888888 99999999999999999999999999999987765422 11225899999999987644
Q ss_pred CEEEEEECCCCEEEEEeeecccceecchhhHHHHHhhccchhhhhccCceeEEeeccccccccceeEEeecCCceEEEEE
Q 003579 327 RHILSAGQDRAFRLFSVIQDQQSRELSQRHVAKRARKLKMKEEELKLKPVIAFDCAEIRERDWCNVVTCHMDTAQAYVWR 406 (809)
Q Consensus 327 ~~l~s~~~dg~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~ 406 (809)
.+++++.|.++++.++........... .+...|. .++.. ..+...+++|-. .+.+..
T Consensus 376 -~~~t~g~Dd~l~~~~~~~~~~t~~~~~---------------~lg~QP~-~lav~---~d~~~avv~~~~---~iv~l~ 432 (603)
T KOG0318|consen 376 -ELFTIGWDDTLRVISLKDNGYTKSEVV---------------KLGSQPK-GLAVL---SDGGTAVVACIS---DIVLLQ 432 (603)
T ss_pred -cEEEEecCCeEEEEecccCccccccee---------------ecCCCce-eEEEc---CCCCEEEEEecC---cEEEEe
Confidence 688899999999998865543322100 0000111 00000 011112222211 111111
Q ss_pred eeeeeecceeeecCCCCCCCeEEEEEcCCCCEEEEEeCCCcEEEEECCCCceeeeeeCcccccccCccccEEEEEEcCCC
Q 003579 407 LQNFVLGEHILRPCPENPTAVKACTISACGNFAVLGTAGGWIERFNLQSGISRGSYLDMSERSNYAHNGEVVGVACDSTN 486 (809)
Q Consensus 407 ~~~~~~~~~~~~~~~~~~~~v~~v~~s~~g~~l~~g~~~g~i~i~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~ 486 (809)
-.+.. .. ..-.....+++++|+++.+++|+.||.|++|.+..+....... ...|.++|++++++|++
T Consensus 433 ~~~~~-----~~--~~~~y~~s~vAv~~~~~~vaVGG~Dgkvhvysl~g~~l~ee~~------~~~h~a~iT~vaySpd~ 499 (603)
T KOG0318|consen 433 DQTKV-----SS--IPIGYESSAVAVSPDGSEVAVGGQDGKVHVYSLSGDELKEEAK------LLEHRAAITDVAYSPDG 499 (603)
T ss_pred cCCcc-----ee--eccccccceEEEcCCCCEEEEecccceEEEEEecCCcccceee------eecccCCceEEEECCCC
Confidence 11100 00 0122567899999999999999999999999999877544322 24899999999999999
Q ss_pred CEEEEEeCcCeEEEEECCCCceee-eee-cCCCeEEEEEeeCCCEEEEEeCCCeEEEEEcCCCe-EEEEEecCCCCeeeE
Q 003579 487 TLMISAGYHGDIKVWDFKGRDLKS-RWE-VGCSLVKIVYHRVNGLLATVADDLVIRLFDVVALR-MVRKFEGHTDRITDF 563 (809)
Q Consensus 487 ~~l~s~~~dg~i~iwd~~~~~~~~-~~~-~~~~i~~~~~s~~~~~la~~~~d~~I~v~d~~~~~-~~~~~~~h~~~I~~l 563 (809)
.+|+++...+.+.+||..+.+... .+. +...|.+++|+|++.++|+|+-|..|.||+++... .+....+|...|+.+
T Consensus 500 ~yla~~Da~rkvv~yd~~s~~~~~~~w~FHtakI~~~aWsP~n~~vATGSlDt~Viiysv~kP~~~i~iknAH~~gVn~v 579 (603)
T KOG0318|consen 500 AYLAAGDASRKVVLYDVASREVKTNRWAFHTAKINCVAWSPNNKLVATGSLDTNVIIYSVKKPAKHIIIKNAHLGGVNSV 579 (603)
T ss_pred cEEEEeccCCcEEEEEcccCceecceeeeeeeeEEEEEeCCCceEEEeccccceEEEEEccChhhheEeccccccCceeE
Confidence 999999999999999999887632 223 45899999999999999999999999999998653 355556799889999
Q ss_pred EECCCCCEEEEEeCCCeEEEEEcC
Q 003579 564 CFSEDGKWLLSSGMDGSLRIWDVI 587 (809)
Q Consensus 564 ~fspdg~~l~s~s~D~~I~vwd~~ 587 (809)
.|-.+ ..|++++.|..|++|++.
T Consensus 580 ~wlde-~tvvSsG~Da~iK~W~v~ 602 (603)
T KOG0318|consen 580 AWLDE-STVVSSGQDANIKVWNVT 602 (603)
T ss_pred EEecC-ceEEeccCcceeEEeccc
Confidence 99854 578999999999999975
No 6
>KOG0271 consensus Notchless-like WD40 repeat-containing protein [Function unknown]
Probab=100.00 E-value=3.2e-51 Score=388.90 Aligned_cols=365 Identities=21% Similarity=0.342 Sum_probs=296.4
Q ss_pred ceEEEEcCCCCCEEEEEEcCCCCEEEEEeCCCeEEEEEeeCCeEEEEEeccCCCcEEEEEEecCCCCEEEEEcCCCcEEE
Q 003579 172 KKLYEFKGWGSSISSCVSSPALDVVAVGCSDGKIHVHNVRYDEELVTFTHSMRGAVTALAFSSDGQPLLASGASSGVISI 251 (809)
Q Consensus 172 ~~~~~~~~~~~~I~~l~~sp~~~~la~g~~dg~i~iwd~~~~~~~~~~~~~~~~~V~~l~fs~dg~~~lasg~~dg~I~i 251 (809)
++..++.||.++|.|++|+|+|.+||+|+.|.++++||+.+..++.+.+.| ...|.|++|+|||+ .||+|+.||.|++
T Consensus 106 rCssS~~GH~e~Vl~~~fsp~g~~l~tGsGD~TvR~WD~~TeTp~~t~KgH-~~WVlcvawsPDgk-~iASG~~dg~I~l 183 (480)
T KOG0271|consen 106 RCSSSIAGHGEAVLSVQFSPTGSRLVTGSGDTTVRLWDLDTETPLFTCKGH-KNWVLCVAWSPDGK-KIASGSKDGSIRL 183 (480)
T ss_pred eeccccCCCCCcEEEEEecCCCceEEecCCCceEEeeccCCCCcceeecCC-ccEEEEEEECCCcc-hhhccccCCeEEE
Confidence 455678999999999999999999999999999999999999999999887 89999999999999 9999999999999
Q ss_pred EECCCceeeeeeecccccceEEEEEec-----CCCEEEEEcCCCcEEEEEeeCCCCCceeEEeccCCCCCCeeEEEecCC
Q 003579 252 WNLEKRRLQSVIREAHDNAIISLHFFA-----NEPVLMSASADNSIKMWIFDTTDGDPRLLRFRSGHSAPPLCIRFYANG 326 (809)
Q Consensus 252 wdl~~~~~~~~~~~~h~~~V~~l~~~~-----~~~~l~s~s~d~~i~vw~~~~~~~~~~~~~~~~~h~~~v~~i~~~~~~ 326 (809)
||.++|+.+..-..+|...|++++|.| ..++|++++.||+++|||+..+ +++..+.||..+|+|++|-.+|
T Consensus 184 wdpktg~~~g~~l~gH~K~It~Lawep~hl~p~~r~las~skDg~vrIWd~~~~----~~~~~lsgHT~~VTCvrwGG~g 259 (480)
T KOG0271|consen 184 WDPKTGQQIGRALRGHKKWITALAWEPLHLVPPCRRLASSSKDGSVRIWDTKLG----TCVRTLSGHTASVTCVRWGGEG 259 (480)
T ss_pred ecCCCCCcccccccCcccceeEEeecccccCCCccceecccCCCCEEEEEccCc----eEEEEeccCccceEEEEEcCCc
Confidence 999999777665559999999999976 5679999999999999988766 6888999999999999998776
Q ss_pred CEEEEEECCCCEEEEEeeecccceecchhhHHHHHhhccchhhhhccCceeEEeeccccccccceeEEeecCCceEEE--
Q 003579 327 RHILSAGQDRAFRLFSVIQDQQSRELSQRHVAKRARKLKMKEEELKLKPVIAFDCAEIRERDWCNVVTCHMDTAQAYV-- 404 (809)
Q Consensus 327 ~~l~s~~~dg~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~-- 404 (809)
+|++++.|++|++|+...+...+++.... .|-+-+.+..+ ..+++
T Consensus 260 -liySgS~DrtIkvw~a~dG~~~r~lkGHa-------------------------------hwvN~lalsTd-y~LRtga 306 (480)
T KOG0271|consen 260 -LIYSGSQDRTIKVWRALDGKLCRELKGHA-------------------------------HWVNHLALSTD-YVLRTGA 306 (480)
T ss_pred -eEEecCCCceEEEEEccchhHHHhhcccc-------------------------------hheeeeeccch-hhhhccc
Confidence 89999999999999998877666654311 11111111110 00000
Q ss_pred EEeeeeeecceeeecCCCCCCCeEEEEEcCCCCEEEEEeCCCcEEEEECCCCc-eeeeeeCcccccccCccccEEEEEEc
Q 003579 405 WRLQNFVLGEHILRPCPENPTAVKACTISACGNFAVLGTAGGWIERFNLQSGI-SRGSYLDMSERSNYAHNGEVVGVACD 483 (809)
Q Consensus 405 w~~~~~~~~~~~~~~~~~~~~~v~~v~~s~~g~~l~~g~~~g~i~i~~~~~~~-~~~~~~~~~~~~~~~h~~~v~~l~~~ 483 (809)
|+-...... .........-.-...+.-..|..+++|+.|+++.+|+....+ .+... .+|..-|+.+.|+
T Consensus 307 f~~t~~~~~--~~se~~~~Al~rY~~~~~~~~erlVSgsDd~tlflW~p~~~kkpi~rm--------tgHq~lVn~V~fS 376 (480)
T KOG0271|consen 307 FDHTGRKPK--SFSEEQKKALERYEAVLKDSGERLVSGSDDFTLFLWNPFKSKKPITRM--------TGHQALVNHVSFS 376 (480)
T ss_pred cccccccCC--ChHHHHHHHHHHHHHhhccCcceeEEecCCceEEEecccccccchhhh--------hchhhheeeEEEC
Confidence 000000000 000000000000001112235679999999999999976554 33333 4999999999999
Q ss_pred CCCCEEEEEeCcCeEEEEECCCCceeeeeecC-CCeEEEEEeeCCCEEEEEeCCCeEEEEEcCCCeEEEEEecCCCCeee
Q 003579 484 STNTLMISAGYHGDIKVWDFKGRDLKSRWEVG-CSLVKIVYHRVNGLLATVADDLVIRLFDVVALRMVRKFEGHTDRITD 562 (809)
Q Consensus 484 ~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~-~~i~~~~~s~~~~~la~~~~d~~I~v~d~~~~~~~~~~~~h~~~I~~ 562 (809)
||++++++++.|..|++||-.+|+.+.++..+ .++..++|+.|.++|++|+.|.++++||+++.++...+.||.+.|.+
T Consensus 377 Pd~r~IASaSFDkSVkLW~g~tGk~lasfRGHv~~VYqvawsaDsRLlVS~SkDsTLKvw~V~tkKl~~DLpGh~DEVf~ 456 (480)
T KOG0271|consen 377 PDGRYIASASFDKSVKLWDGRTGKFLASFRGHVAAVYQVAWSADSRLLVSGSKDSTLKVWDVRTKKLKQDLPGHADEVFA 456 (480)
T ss_pred CCccEEEEeecccceeeeeCCCcchhhhhhhccceeEEEEeccCccEEEEcCCCceEEEEEeeeeeecccCCCCCceEEE
Confidence 99999999999999999999999999999966 99999999999999999999999999999999999999999999999
Q ss_pred EEECCCCCEEEEEeCCCeEEEEE
Q 003579 563 FCFSEDGKWLLSSGMDGSLRIWD 585 (809)
Q Consensus 563 l~fspdg~~l~s~s~D~~I~vwd 585 (809)
+.|+|||..+++|+.|..+++|.
T Consensus 457 vDwspDG~rV~sggkdkv~~lw~ 479 (480)
T KOG0271|consen 457 VDWSPDGQRVASGGKDKVLRLWR 479 (480)
T ss_pred EEecCCCceeecCCCceEEEeec
Confidence 99999999999999999999995
No 7
>KOG0306 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification]
Probab=100.00 E-value=9.4e-49 Score=402.36 Aligned_cols=581 Identities=15% Similarity=0.223 Sum_probs=414.1
Q ss_pred cccceeeeEecCC---cceEEEEcCCeEEEEEEcCCeEEEEEcCccEEEEec--CCCCCCcEEEEEeCCeEEEEECCe--
Q 003579 4 FEPYKAIGYITSS---VPFSVQRLGTENFVTVSVGKAFHIYNCAKLNLVLVG--PQLPKKIRALASYRDYTFAAYGNH-- 76 (809)
Q Consensus 4 ~~p~r~~g~vs~~---v~~~~~~~~~~~~i~~~~~~~i~iwd~~~~~~~~~~--~~~~~~I~~la~~~~~~~~a~g~~-- 76 (809)
|.|--+.|.+.++ +-|.+...+.+..+++++...+.+||++++.+.... ......|+|+..+++...+|.|..
T Consensus 8 ye~~~~fgviaS~~aN~~~~~~~~~~Gr~va~~a~E~vn~WdlRtge~~~~l~~~~~k~evt~l~~~~d~l~lAVGYaDG 87 (888)
T KOG0306|consen 8 YEPAAVFGVIASEVANINFVVKRSGKGRAVAVSALEQVNIWDLRTGEIEKKLILLKKKAEVTCLRSSDDILLLAVGYADG 87 (888)
T ss_pred ccccceeeeeecCccceeEEEeecCCCcEEEEeccccEeEEeeecchhhhhhhhhcccceEEEeeccCCcceEEEEecCc
Confidence 5555666777753 445544455678888889999999999999443322 234468999999999888877644
Q ss_pred -EEEEECC--eeEEEEccccccEEEEEEe--CCEEEEEeCCCcEEEEEcCCCccccceeeeEEcCCccccEEEEeCCCCC
Q 003579 77 -IAVVKRA--HQVATWSRHSAKVNLLLLF--GEHILSIDIDGNMFIWAFKGIEENLAPVGHVKLDDKFTPTCIMHPDTYL 151 (809)
Q Consensus 77 -i~vw~~~--~~~~~~~~h~~~V~~l~~~--g~~l~s~~~dg~i~vWd~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~ 151 (809)
|++|+.. ....++.||+..|+.+.++ |..|+|||.|+.|.|||+-...- ...+..|...+....|..+.
T Consensus 88 sVqif~~~s~~~~~tfngHK~AVt~l~fd~~G~rlaSGskDt~IIvwDlV~E~G----l~rL~GHkd~iT~~~F~~~~-- 161 (888)
T KOG0306|consen 88 SVQIFSLESEEILITFNGHKAAVTTLKFDKIGTRLASGSKDTDIIVWDLVGEEG----LFRLRGHKDSITQALFLNGD-- 161 (888)
T ss_pred eEEeeccCCCceeeeecccccceEEEEEcccCceEeecCCCccEEEEEecccee----eEEeecchHHHhHHhccCCC--
Confidence 9999986 5566799999999999995 99999999999999999988776 56677777777777777766
Q ss_pred CEEEEEeCCCeEEEEeCCCCceEEEEcCCCCCEEEEEEcCCCCEEEEEeCCCeEEEEEeeCC------------eEEEEE
Q 003579 152 NKVIVGSQEGSLQLWNISTKKKLYEFKGWGSSISSCVSSPALDVVAVGCSDGKIHVHNVRYD------------EELVTF 219 (809)
Q Consensus 152 ~~l~~~~~dg~i~lwd~~~~~~~~~~~~~~~~I~~l~~sp~~~~la~g~~dg~i~iwd~~~~------------~~~~~~ 219 (809)
+.+++.+.|+.|++||+++..+..+.-.|.+.|.++++.+ +.+++++.|+.+.+|++... +...++
T Consensus 162 ~~lvS~sKDs~iK~WdL~tqhCf~Thvd~r~Eiw~l~~~~--~~lvt~~~dse~~v~~L~~~~D~~~~~~~~s~~~~G~~ 239 (888)
T KOG0306|consen 162 SFLVSVSKDSMIKFWDLETQHCFETHVDHRGEIWALVLDE--KLLVTAGTDSELKVWELAFEDDEKETNRYISTKLRGTF 239 (888)
T ss_pred eEEEEeccCceEEEEecccceeeeEEecccceEEEEEEec--ceEEEEecCCceEEEEeecccccccccccceeecccee
Confidence 7899999999999999999999999999999999999998 68999999999999999311 111222
Q ss_pred eccCCCcEEEEEEecCCCCEEEEEcCCCcEEEEECCCceee-----------------------------------eeee
Q 003579 220 THSMRGAVTALAFSSDGQPLLASGASSGVISIWNLEKRRLQ-----------------------------------SVIR 264 (809)
Q Consensus 220 ~~~~~~~V~~l~fs~dg~~~lasg~~dg~I~iwdl~~~~~~-----------------------------------~~~~ 264 (809)
....++..-.++..++++ +++.-+.|..+.++.+.+...+ ..++
T Consensus 240 ~rqsk~R~i~l~~d~s~r-~~~c~g~d~~~e~frI~s~~E~~k~l~Kk~k~~Kkka~t~e~~~~v~~sl~~~i~r~~~ir 318 (888)
T KOG0306|consen 240 IRQSKGREINLVTDFSDR-FLVCQGADKVIELFRIRSKEEIAKILSKKLKRAKKKAETEENEDDVEKSLSDEIKRLETIR 318 (888)
T ss_pred eeccCCceeEEeecCccc-EEEEecchhhhhheeecCHHHHHHHHHHHHHHhhhhccccccccchhhhHHHHHHHHHhee
Confidence 222234444445555555 5555556666666655432100 0000
Q ss_pred cccccceEEEEEecCCC---EEEEEcCCCcEEEEEeeCCCCC------ceeEEeccCCCCCCeeEEEecCCCEEEEEECC
Q 003579 265 EAHDNAIISLHFFANEP---VLMSASADNSIKMWIFDTTDGD------PRLLRFRSGHSAPPLCIRFYANGRHILSAGQD 335 (809)
Q Consensus 265 ~~h~~~V~~l~~~~~~~---~l~s~s~d~~i~vw~~~~~~~~------~~~~~~~~~h~~~v~~i~~~~~~~~l~s~~~d 335 (809)
-...+.++.+.|++. .|++ -.++++..+.++..... ..-+.....- ..|.+++++.+...+++|+ .
T Consensus 319 --~~~kiks~dv~~~~~~~~~lv~-l~nNtv~~ysl~~s~~~~p~~~~~~~i~~~GHR-~dVRsl~vS~d~~~~~Sga-~ 393 (888)
T KOG0306|consen 319 --TSAKIKSFDVTPSGGTENTLVL-LANNTVEWYSLENSGKTSPEADRTSNIEIGGHR-SDVRSLCVSSDSILLASGA-G 393 (888)
T ss_pred --chhheeEEEEEecCCcceeEEE-eecCceEEEEeccCCCCCccccccceeeeccch-hheeEEEeecCceeeeecC-C
Confidence 112344455544332 2222 33455555554441111 0011111111 1255555555554444443 3
Q ss_pred CCEEEEEeeecccceecchhhHHHHHhhccchhhhhccCceeEEeeccccccccceeEEeecCCceEEEEEeeeeeecce
Q 003579 336 RAFRLFSVIQDQQSRELSQRHVAKRARKLKMKEEELKLKPVIAFDCAEIRERDWCNVVTCHMDTAQAYVWRLQNFVLGEH 415 (809)
Q Consensus 336 g~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~ 415 (809)
+++++|+..+.++++.+..+.. .+..+ -.|+..+..+...+.+.++++....+
T Consensus 394 ~SikiWn~~t~kciRTi~~~y~-------------------l~~~F-----vpgd~~Iv~G~k~Gel~vfdlaS~~l--- 446 (888)
T KOG0306|consen 394 ESIKIWNRDTLKCIRTITCGYI-------------------LASKF-----VPGDRYIVLGTKNGELQVFDLASASL--- 446 (888)
T ss_pred CcEEEEEccCcceeEEeccccE-------------------EEEEe-----cCCCceEEEeccCCceEEEEeehhhh---
Confidence 3455555555555555554310 00000 12344444445555555555544322
Q ss_pred eeecCCCCCCCeEEEEEcCCCCEEEEEeCCCcEEEEECCC-----CceeeeeeCcccccccCccccEEEEEEcCCCCEEE
Q 003579 416 ILRPCPENPTAVKACTISACGNFAVLGTAGGWIERFNLQS-----GISRGSYLDMSERSNYAHNGEVVGVACDSTNTLMI 490 (809)
Q Consensus 416 ~~~~~~~~~~~v~~v~~s~~g~~l~~g~~~g~i~i~~~~~-----~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~l~ 490 (809)
+.....|.+.+.+++.+||+..+++|+.|.+|++|+..- |.....+... ....-.-...|.|+.++||+++|+
T Consensus 447 -~Eti~AHdgaIWsi~~~pD~~g~vT~saDktVkfWdf~l~~~~~gt~~k~lsl~-~~rtLel~ddvL~v~~Spdgk~La 524 (888)
T KOG0306|consen 447 -VETIRAHDGAIWSISLSPDNKGFVTGSADKTVKFWDFKLVVSVPGTQKKVLSLK-HTRTLELEDDVLCVSVSPDGKLLA 524 (888)
T ss_pred -hhhhhccccceeeeeecCCCCceEEecCCcEEEEEeEEEEeccCcccceeeeec-cceEEeccccEEEEEEcCCCcEEE
Confidence 333346789999999999999999999999999999642 2221111100 001113457899999999999999
Q ss_pred EEeCcCeEEEEECCCCceeeeeecC-CCeEEEEEeeCCCEEEEEeCCCeEEEEEcCCCeEEEEEecCCCCeeeEEECCCC
Q 003579 491 SAGYHGDIKVWDFKGRDLKSRWEVG-CSLVKIVYHRVNGLLATVADDLVIRLFDVVALRMVRKFEGHTDRITDFCFSEDG 569 (809)
Q Consensus 491 s~~~dg~i~iwd~~~~~~~~~~~~~-~~i~~~~~s~~~~~la~~~~d~~I~v~d~~~~~~~~~~~~h~~~I~~l~fspdg 569 (809)
.+-.|.++++|-+.+-+..-.+..+ -|+.||..+||++++++|+.|.+|++|-++-|.+.+.|-+|.+.|.++.|-|+.
T Consensus 525 VsLLdnTVkVyflDtlKFflsLYGHkLPV~smDIS~DSklivTgSADKnVKiWGLdFGDCHKS~fAHdDSvm~V~F~P~~ 604 (888)
T KOG0306|consen 525 VSLLDNTVKVYFLDTLKFFLSLYGHKLPVLSMDISPDSKLIVTGSADKNVKIWGLDFGDCHKSFFAHDDSVMSVQFLPKT 604 (888)
T ss_pred EEeccCeEEEEEecceeeeeeecccccceeEEeccCCcCeEEeccCCCceEEeccccchhhhhhhcccCceeEEEEcccc
Confidence 9999999999999998887776555 899999999999999999999999999999999999999999999999999999
Q ss_pred CEEEEEeCCCeEEEEEcCCccEEEEeeeCc-ceEEEEEcCCCCeEEEEEeCCCeEEEeec
Q 003579 570 KWLLSSGMDGSLRIWDVILARQIDAIHVDV-SITALSLSPNMDVLATAHVDQNGVYLWVN 628 (809)
Q Consensus 570 ~~l~s~s~D~~I~vwd~~~~~~i~~~~~~~-~v~~l~~spdg~~lat~~~d~~~i~lW~~ 628 (809)
..+.++|.|+.|+-||-..-++++.+..|. .|++++.+|+|.|+++++.|. +|++|.-
T Consensus 605 ~~FFt~gKD~kvKqWDg~kFe~iq~L~~H~~ev~cLav~~~G~~vvs~shD~-sIRlwE~ 663 (888)
T KOG0306|consen 605 HLFFTCGKDGKVKQWDGEKFEEIQKLDGHHSEVWCLAVSPNGSFVVSSSHDK-SIRLWER 663 (888)
T ss_pred eeEEEecCcceEEeechhhhhhheeeccchheeeeeEEcCCCCeEEeccCCc-eeEeeec
Confidence 999999999999999999989999887655 599999999999999999998 6999983
No 8
>KOG0319 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification]
Probab=100.00 E-value=1.3e-49 Score=408.89 Aligned_cols=489 Identities=14% Similarity=0.212 Sum_probs=411.3
Q ss_pred cCCeEEEEEEcCCeEEEEEcCccEEEEecCCCCCCcEEEEEeCCeE--EEEECCe---EEEEECC-e--eEEEEcccccc
Q 003579 24 LGTENFVTVSVGKAFHIYNCAKLNLVLVGPQLPKKIRALASYRDYT--FAAYGNH---IAVVKRA-H--QVATWSRHSAK 95 (809)
Q Consensus 24 ~~~~~~i~~~~~~~i~iwd~~~~~~~~~~~~~~~~I~~la~~~~~~--~~a~g~~---i~vw~~~-~--~~~~~~~h~~~ 95 (809)
+.+..+++++.|+.++|||+..+.+...+.+|++.|.++.|+|+.. .+++|.. +++|+.. + +++.+..|.+.
T Consensus 115 ~~g~LlAtggaD~~v~VWdi~~~~~th~fkG~gGvVssl~F~~~~~~~lL~sg~~D~~v~vwnl~~~~tcl~~~~~H~S~ 194 (775)
T KOG0319|consen 115 PTGTLLATGGADGRVKVWDIKNGYCTHSFKGHGGVVSSLLFHPHWNRWLLASGATDGTVRVWNLNDKRTCLHTMILHKSA 194 (775)
T ss_pred CCCceEEeccccceEEEEEeeCCEEEEEecCCCceEEEEEeCCccchhheeecCCCceEEEEEcccCchHHHHHHhhhhh
Confidence 5678899999999999999999999999999999999999999943 3566544 9999864 2 35568999999
Q ss_pred EEEEEE--eCCEEEEEeCCCcEEEEEcCCCccccceeeeEEcCCccccEEEEeCC---CCCCEEEEEeCCCeEEEEeCCC
Q 003579 96 VNLLLL--FGEHILSIDIDGNMFIWAFKGIEENLAPVGHVKLDDKFTPTCIMHPD---TYLNKVIVGSQEGSLQLWNIST 170 (809)
Q Consensus 96 V~~l~~--~g~~l~s~~~dg~i~vWd~~~~~~~~~~~~~~~~~~~~~~~~~~~p~---~~~~~l~~~~~dg~i~lwd~~~ 170 (809)
|+++.+ ++..+++++.|..|.|||+.+.+. .++++.-.... ++.+-++ +...++++++.+|.+++||.++
T Consensus 195 vtsL~~~~d~~~~ls~~RDkvi~vwd~~~~~~----l~~lp~ye~~E-~vv~l~~~~~~~~~~~~TaG~~g~~~~~d~es 269 (775)
T KOG0319|consen 195 VTSLAFSEDSLELLSVGRDKVIIVWDLVQYKK----LKTLPLYESLE-SVVRLREELGGKGEYIITAGGSGVVQYWDSES 269 (775)
T ss_pred eeeeeeccCCceEEEeccCcEEEEeehhhhhh----hheechhhhee-eEEEechhcCCcceEEEEecCCceEEEEeccc
Confidence 999997 799999999999999999976665 34443333322 3344443 1114799999999999999999
Q ss_pred CceEEEEcCC-CCCEEEEEEcCCCCEEEEEeCCCeEEEEEeeCCeEEEEEeccCCCcEEEEEEecCCCCEEEEEcCCCcE
Q 003579 171 KKKLYEFKGW-GSSISSCVSSPALDVVAVGCSDGKIHVHNVRYDEELVTFTHSMRGAVTALAFSSDGQPLLASGASSGVI 249 (809)
Q Consensus 171 ~~~~~~~~~~-~~~I~~l~~sp~~~~la~g~~dg~i~iwd~~~~~~~~~~~~~~~~~V~~l~fs~dg~~~lasg~~dg~I 249 (809)
+++++..+.. ...+..+...+....++..+.+..+.++|.++.+....+.+. .+.|.+++|-.....+||++++.+.+
T Consensus 270 ~~~~~~~~~~~~~e~~~~~~~~~~~~~l~vtaeQnl~l~d~~~l~i~k~ivG~-ndEI~Dm~~lG~e~~~laVATNs~~l 348 (775)
T KOG0319|consen 270 GKCVYKQRQSDSEEIDHLLAIESMSQLLLVTAEQNLFLYDEDELTIVKQIVGY-NDEILDMKFLGPEESHLAVATNSPEL 348 (775)
T ss_pred chhhhhhccCCchhhhcceeccccCceEEEEccceEEEEEccccEEehhhcCC-chhheeeeecCCccceEEEEeCCCce
Confidence 9988766533 344777777776667777788899999999999999998876 67899999986555599999999999
Q ss_pred EEEECCCceeeeeeecccccceEEEEEecCCCEEEEEcCCCcEEEEEeeCCCCCceeEEeccCCCCCCeeEEEecC-CCE
Q 003579 250 SIWNLEKRRLQSVIREAHDNAIISLHFFANEPVLMSASADNSIKMWIFDTTDGDPRLLRFRSGHSAPPLCIRFYAN-GRH 328 (809)
Q Consensus 250 ~iwdl~~~~~~~~~~~~h~~~V~~l~~~~~~~~l~s~s~d~~i~vw~~~~~~~~~~~~~~~~~h~~~v~~i~~~~~-~~~ 328 (809)
++|++.+..+. .+. +|+..|.++....+|-+|+||+.|+++++|.++.......++....+|.+.|.+++++.. -.+
T Consensus 349 r~y~~~~~~c~-ii~-GH~e~vlSL~~~~~g~llat~sKD~svilWr~~~~~~~~~~~a~~~gH~~svgava~~~~~asf 426 (775)
T KOG0319|consen 349 RLYTLPTSYCQ-IIP-GHTEAVLSLDVWSSGDLLATGSKDKSVILWRLNNNCSKSLCVAQANGHTNSVGAVAGSKLGASF 426 (775)
T ss_pred EEEecCCCceE-EEe-CchhheeeeeecccCcEEEEecCCceEEEEEecCCcchhhhhhhhcccccccceeeecccCccE
Confidence 99998887666 555 999999999966677899999999999999997666666677788899999999999774 468
Q ss_pred EEEEECCCCEEEEEeeecccceecchhhHHHHHhhccchhhhhccCceeEEeeccccccccceeEEeecCCceEEEEEee
Q 003579 329 ILSAGQDRAFRLFSVIQDQQSRELSQRHVAKRARKLKMKEEELKLKPVIAFDCAEIRERDWCNVVTCHMDTAQAYVWRLQ 408 (809)
Q Consensus 329 l~s~~~dg~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~ 408 (809)
|+++|.|+++++|++...+...... + +
T Consensus 427 fvsvS~D~tlK~W~l~~s~~~~~~~----------------------~----------------~--------------- 453 (775)
T KOG0319|consen 427 FVSVSQDCTLKLWDLPKSKETAFPI----------------------V----------------L--------------- 453 (775)
T ss_pred EEEecCCceEEEecCCCcccccccc----------------------e----------------e---------------
Confidence 9999999999999987632221100 0 0
Q ss_pred eeeecceeeecCCCCCCCeEEEEEcCCCCEEEEEeCCCcEEEEECCCCceeeeeeCcccccccCccccEEEEEEcCCCCE
Q 003579 409 NFVLGEHILRPCPENPTAVKACTISACGNFAVLGTAGGWIERFNLQSGISRGSYLDMSERSNYAHNGEVVGVACDSTNTL 488 (809)
Q Consensus 409 ~~~~~~~~~~~~~~~~~~v~~v~~s~~g~~l~~g~~~g~i~i~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~ 488 (809)
........|...|.+++++|+.+.+++|+.|.+.++|++........+. +|...|.++.|++..+.
T Consensus 454 ------~~~~t~~aHdKdIN~Vaia~ndkLiAT~SqDktaKiW~le~~~l~~vLs--------GH~RGvw~V~Fs~~dq~ 519 (775)
T KOG0319|consen 454 ------TCRYTERAHDKDINCVAIAPNDKLIATGSQDKTAKIWDLEQLRLLGVLS--------GHTRGVWCVSFSKNDQL 519 (775)
T ss_pred ------hhhHHHHhhcccccceEecCCCceEEecccccceeeecccCceEEEEee--------CCccceEEEEeccccce
Confidence 0000112466899999999999999999999999999999888888886 99999999999999999
Q ss_pred EEEEeCcCeEEEEECCCCceeeeeecC-CCeEEEEEeeCCCEEEEEeCCCeEEEEEcCCCeEEEEEecCCCCeeeEEECC
Q 003579 489 MISAGYHGDIKVWDFKGRDLKSRWEVG-CSLVKIVYHRVNGLLATVADDLVIRLFDVVALRMVRKFEGHTDRITDFCFSE 567 (809)
Q Consensus 489 l~s~~~dg~i~iwd~~~~~~~~~~~~~-~~i~~~~~s~~~~~la~~~~d~~I~v~d~~~~~~~~~~~~h~~~I~~l~fsp 567 (809)
++|++.|++|+||.+.+..++++++.+ +.|..+.|-.+++.|++++.||-|++|++.+.++++++.+|.++|.+++-+|
T Consensus 520 laT~SgD~TvKIW~is~fSClkT~eGH~~aVlra~F~~~~~qliS~~adGliKlWnikt~eC~~tlD~H~DrvWaL~~~~ 599 (775)
T KOG0319|consen 520 LATCSGDKTVKIWSISTFSCLKTFEGHTSAVLRASFIRNGKQLISAGADGLIKLWNIKTNECEMTLDAHNDRVWALSVSP 599 (775)
T ss_pred eEeccCCceEEEEEeccceeeeeecCccceeEeeeeeeCCcEEEeccCCCcEEEEeccchhhhhhhhhccceeEEEeecC
Confidence 999999999999999999999999965 8999999999999999999999999999999999999999999999999999
Q ss_pred CCCEEEEEeCCCeEEEEEcC
Q 003579 568 DGKWLLSSGMDGSLRIWDVI 587 (809)
Q Consensus 568 dg~~l~s~s~D~~I~vwd~~ 587 (809)
.+.+++||+.||.|.+|.=.
T Consensus 600 ~~~~~~tgg~Dg~i~~wkD~ 619 (775)
T KOG0319|consen 600 LLDMFVTGGGDGRIIFWKDV 619 (775)
T ss_pred ccceeEecCCCeEEEEeecC
Confidence 99999999999999999533
No 9
>KOG0291 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification]
Probab=100.00 E-value=5.5e-47 Score=389.55 Aligned_cols=526 Identities=17% Similarity=0.237 Sum_probs=429.7
Q ss_pred CCcceEEEEcCCeEEEEEEcCCeEEEEEcCccEEEEecCCCCCCcEEEEEeCCeEEEEE-CCe---EEEEECCeeEEEEc
Q 003579 15 SSVPFSVQRLGTENFVTVSVGKAFHIYNCAKLNLVLVGPQLPKKIRALASYRDYTFAAY-GNH---IAVVKRAHQVATWS 90 (809)
Q Consensus 15 ~~v~~~~~~~~~~~~i~~~~~~~i~iwd~~~~~~~~~~~~~~~~I~~la~~~~~~~~a~-g~~---i~vw~~~~~~~~~~ 90 (809)
+++-|+ ++.+-+..++|+.+.+||+++.+-.-..-.+...|++++.||+|.++.+ ... +.+=-..+.+.+..
T Consensus 18 Gnl~ft----~dG~sviSPvGNrvsv~dLknN~S~Tl~~e~~~NI~~ialSp~g~lllavdE~g~~~lvs~~~r~Vlh~f 93 (893)
T KOG0291|consen 18 GNLVFT----KDGNSVISPVGNRVSVFDLKNNKSYTLPLETRYNITRIALSPDGTLLLAVDERGRALLVSLLSRSVLHRF 93 (893)
T ss_pred CcEEEC----CCCCEEEeccCCEEEEEEccCCcceeEEeecCCceEEEEeCCCceEEEEEcCCCcEEEEecccceeeEEE
Confidence 445555 5667788899999999999986544444456889999999999877654 332 33322333333333
Q ss_pred cccccEEEEEE--eCCEEEEEeCCCcEEEEEcCCCcc--c--cceeeeEEcCCccccEEEEeCCCCCCEEEEEeCCCeEE
Q 003579 91 RHSAKVNLLLL--FGEHILSIDIDGNMFIWAFKGIEE--N--LAPVGHVKLDDKFTPTCIMHPDTYLNKVIVGSQEGSLQ 164 (809)
Q Consensus 91 ~h~~~V~~l~~--~g~~l~s~~~dg~i~vWd~~~~~~--~--~~~~~~~~~~~~~~~~~~~~p~~~~~~l~~~~~dg~i~ 164 (809)
.-+.+|.++.| +|.++|.+. .+.+.||....... . ....+++..+-.-+.+.-|+.+. +.+++|+.|-+++
T Consensus 94 ~fk~~v~~i~fSPng~~fav~~-gn~lqiw~~P~~~~~~~~pFvl~r~~~g~fddi~si~Ws~DS--r~l~~gsrD~s~r 170 (893)
T KOG0291|consen 94 NFKRGVGAIKFSPNGKFFAVGC-GNLLQIWHAPGEIKNEFNPFVLHRTYLGHFDDITSIDWSDDS--RLLVTGSRDLSAR 170 (893)
T ss_pred eecCccceEEECCCCcEEEEEe-cceeEEEecCcchhcccCcceEeeeecCCccceeEEEeccCC--ceEEeccccceEE
Confidence 34678889887 677888776 78899999876544 1 22345566677777788899998 8999999999999
Q ss_pred EEeCCCCce--EEEEcCCCCCEEEEEEcCCCCEEEEEeCCCeEEEEEeeC-----------------------CeE----
Q 003579 165 LWNISTKKK--LYEFKGWGSSISSCVSSPALDVVAVGCSDGKIHVHNVRY-----------------------DEE---- 215 (809)
Q Consensus 165 lwd~~~~~~--~~~~~~~~~~I~~l~~sp~~~~la~g~~dg~i~iwd~~~-----------------------~~~---- 215 (809)
+|.++..+- .+.+.+|...|.++-|..+..-+.+.+.||.+.+|.... ++.
T Consensus 171 l~~v~~~k~~~~~~l~gHkd~VvacfF~~~~~~l~tvskdG~l~~W~~~~~P~~~~~~~kd~eg~~d~~~~~~~Eek~~~ 250 (893)
T KOG0291|consen 171 LFGVDGNKNLFTYALNGHKDYVVACFFGANSLDLYTVSKDGALFVWTCDLRPPELDKAEKDEEGSDDEEMDEDGEEKTHK 250 (893)
T ss_pred EEEeccccccceEeccCCCcceEEEEeccCcceEEEEecCceEEEEEecCCCcccccccccccccccccccccchhhhcc
Confidence 999987766 677899999999999999999999999999999998761 111
Q ss_pred -E-----EEEeccCCCcEEEEEEecCCCCEEEEEcCCCcEEEEECCCceeeeeeecccccceEEEEEecCCCEEEEEcCC
Q 003579 216 -L-----VTFTHSMRGAVTALAFSSDGQPLLASGASSGVISIWNLEKRRLQSVIREAHDNAIISLHFFANEPVLMSASAD 289 (809)
Q Consensus 216 -~-----~~~~~~~~~~V~~l~fs~dg~~~lasg~~dg~I~iwdl~~~~~~~~~~~~h~~~V~~l~~~~~~~~l~s~s~d 289 (809)
. ..+.......|++.+|++... +||+|-.+|...+|.+..-.+++.+. -...+|..+.|+..|.+|+.|+..
T Consensus 251 ~~~~k~~k~~ln~~~~kvtaa~fH~~t~-~lvvgFssG~f~LyelP~f~lih~LS-is~~~I~t~~~N~tGDWiA~g~~k 328 (893)
T KOG0291|consen 251 IFWYKTKKHYLNQNSSKVTAAAFHKGTN-LLVVGFSSGEFGLYELPDFNLIHSLS-ISDQKILTVSFNSTGDWIAFGCSK 328 (893)
T ss_pred eEEEEEEeeeecccccceeeeeccCCce-EEEEEecCCeeEEEecCCceEEEEee-cccceeeEEEecccCCEEEEcCCc
Confidence 0 111112236899999999877 99999999999999999999999998 566789999999999999998764
Q ss_pred -CcEEEEEeeCCCCCceeEEeccCCCCCCeeEEEecCCCEEEEEECCCCEEEEEeeecccceecchhhHHHHHhhccchh
Q 003579 290 -NSIKMWIFDTTDGDPRLLRFRSGHSAPPLCIRFYANGRHILSAGQDRAFRLFSVIQDQQSRELSQRHVAKRARKLKMKE 368 (809)
Q Consensus 290 -~~i~vw~~~~~~~~~~~~~~~~~h~~~v~~i~~~~~~~~l~s~~~dg~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~ 368 (809)
|.+-||++... ..+....||...+++++|+|||+++++|+.||.|++||...+-+...+
T Consensus 329 lgQLlVweWqsE----sYVlKQQgH~~~i~~l~YSpDgq~iaTG~eDgKVKvWn~~SgfC~vTF---------------- 388 (893)
T KOG0291|consen 329 LGQLLVWEWQSE----SYVLKQQGHSDRITSLAYSPDGQLIATGAEDGKVKVWNTQSGFCFVTF---------------- 388 (893)
T ss_pred cceEEEEEeecc----ceeeeccccccceeeEEECCCCcEEEeccCCCcEEEEeccCceEEEEe----------------
Confidence 89999998876 456667899999999999999999999999999999998765443333
Q ss_pred hhhccCceeEEeeccccccccceeEEeecCCceEEEEEeeeeeecceeeecCCCCCCCeEEEEEcCCCCEEEEEeCCCcE
Q 003579 369 EELKLKPVIAFDCAEIRERDWCNVVTCHMDTAQAYVWRLQNFVLGEHILRPCPENPTAVKACTISACGNFAVLGTAGGWI 448 (809)
Q Consensus 369 ~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~v~~v~~s~~g~~l~~g~~~g~i 448 (809)
..|.+.|+.+.|+..|+.+++.+-||+|
T Consensus 389 ----------------------------------------------------teHts~Vt~v~f~~~g~~llssSLDGtV 416 (893)
T KOG0291|consen 389 ----------------------------------------------------TEHTSGVTAVQFTARGNVLLSSSLDGTV 416 (893)
T ss_pred ----------------------------------------------------ccCCCceEEEEEEecCCEEEEeecCCeE
Confidence 3577999999999999999999999999
Q ss_pred EEEECCCCceeeeeeCcccccccCccccEEEEEEcCCCCEEEEEeCcC-eEEEEECCCCceeeeeecC-CCeEEEEEeeC
Q 003579 449 ERFNLQSGISRGSYLDMSERSNYAHNGEVVGVACDSTNTLMISAGYHG-DIKVWDFKGRDLKSRWEVG-CSLVKIVYHRV 526 (809)
Q Consensus 449 ~i~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~l~s~~~dg-~i~iwd~~~~~~~~~~~~~-~~i~~~~~s~~ 526 (809)
+.||+......+++.. .......+++.+|.|.++..|+.|. .|.+|++++|+++..+..+ +||.+++|+|+
T Consensus 417 RAwDlkRYrNfRTft~-------P~p~QfscvavD~sGelV~AG~~d~F~IfvWS~qTGqllDiLsGHEgPVs~l~f~~~ 489 (893)
T KOG0291|consen 417 RAWDLKRYRNFRTFTS-------PEPIQFSCVAVDPSGELVCAGAQDSFEIFVWSVQTGQLLDILSGHEGPVSGLSFSPD 489 (893)
T ss_pred EeeeecccceeeeecC-------CCceeeeEEEEcCCCCEEEeeccceEEEEEEEeecCeeeehhcCCCCcceeeEEccc
Confidence 9999999999888863 4456678999999999999988775 5999999999999999877 99999999999
Q ss_pred CCEEEEEeCCCeEEEEEcCCC-eEEEEEecCCCCeeeEEECCCCCEEEEEeCCCeEEEEEcCCccEEEEeee--------
Q 003579 527 NGLLATVADDLVIRLFDVVAL-RMVRKFEGHTDRITDFCFSEDGKWLLSSGMDGSLRIWDVILARQIDAIHV-------- 597 (809)
Q Consensus 527 ~~~la~~~~d~~I~v~d~~~~-~~~~~~~~h~~~I~~l~fspdg~~l~s~s~D~~I~vwd~~~~~~i~~~~~-------- 597 (809)
+..||+++.|.+||+||+-.. ..+.++. +...+++++|+|||+.|++++.||.|.+||+..+..+..+.+
T Consensus 490 ~~~LaS~SWDkTVRiW~if~s~~~vEtl~-i~sdvl~vsfrPdG~elaVaTldgqItf~d~~~~~q~~~IdgrkD~~~gR 568 (893)
T KOG0291|consen 490 GSLLASGSWDKTVRIWDIFSSSGTVETLE-IRSDVLAVSFRPDGKELAVATLDGQITFFDIKEAVQVGSIDGRKDLSGGR 568 (893)
T ss_pred cCeEEeccccceEEEEEeeccCceeeeEe-eccceeEEEEcCCCCeEEEEEecceEEEEEhhhceeeccccchhhccccc
Confidence 999999999999999998654 3455555 778899999999999999999999999999987765533321
Q ss_pred -------------CcceEEEEEcCCCCeEEEEEeCCCeEEEeecCc
Q 003579 598 -------------DVSITALSLSPNMDVLATAHVDQNGVYLWVNRC 630 (809)
Q Consensus 598 -------------~~~v~~l~~spdg~~lat~~~d~~~i~lW~~~~ 630 (809)
....+.+++|+||.++++|+... .|.+|++..
T Consensus 569 ~~~D~~ta~~sa~~K~Ftti~ySaDG~~IlAgG~sn-~iCiY~v~~ 613 (893)
T KOG0291|consen 569 KETDRITAENSAKGKTFTTICYSADGKCILAGGESN-SICIYDVPE 613 (893)
T ss_pred cccceeehhhcccCCceEEEEEcCCCCEEEecCCcc-cEEEEECch
Confidence 13489999999999999999887 599999864
No 10
>KOG0271 consensus Notchless-like WD40 repeat-containing protein [Function unknown]
Probab=100.00 E-value=9e-49 Score=372.26 Aligned_cols=326 Identities=19% Similarity=0.298 Sum_probs=290.3
Q ss_pred EEeccCCCcEEEEEEecCCCCEEEEEcCCCcEEEEECCCceeeeeeecccccceEEEEEecCCCEEEEEcCCCcEEEEEe
Q 003579 218 TFTHSMRGAVTALAFSSDGQPLLASGASSGVISIWNLEKRRLQSVIREAHDNAIISLHFFANEPVLMSASADNSIKMWIF 297 (809)
Q Consensus 218 ~~~~~~~~~V~~l~fs~dg~~~lasg~~dg~I~iwdl~~~~~~~~~~~~h~~~V~~l~~~~~~~~l~s~s~d~~i~vw~~ 297 (809)
.+.+ |.++|.|++|+|+|. .|++|+.|.++++||+.+.....+.+ +|...|.+++|+|||+.|++|+.||+|++||-
T Consensus 110 S~~G-H~e~Vl~~~fsp~g~-~l~tGsGD~TvR~WD~~TeTp~~t~K-gH~~WVlcvawsPDgk~iASG~~dg~I~lwdp 186 (480)
T KOG0271|consen 110 SIAG-HGEAVLSVQFSPTGS-RLVTGSGDTTVRLWDLDTETPLFTCK-GHKNWVLCVAWSPDGKKIASGSKDGSIRLWDP 186 (480)
T ss_pred ccCC-CCCcEEEEEecCCCc-eEEecCCCceEEeeccCCCCcceeec-CCccEEEEEEECCCcchhhccccCCeEEEecC
Confidence 3444 489999999999999 99999999999999999999999999 99999999999999999999999999999976
Q ss_pred eCCCCCceeEEeccCCCCCCeeEEEec-----CCCEEEEEECCCCEEEEEeeecccceecchhhHHHHHhhccchhhhhc
Q 003579 298 DTTDGDPRLLRFRSGHSAPPLCIRFYA-----NGRHILSAGQDRAFRLFSVIQDQQSRELSQRHVAKRARKLKMKEEELK 372 (809)
Q Consensus 298 ~~~~~~~~~~~~~~~h~~~v~~i~~~~-----~~~~l~s~~~dg~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 372 (809)
.++. ...+.+.+|...|++++|.| ..++|++++.||++++||+..+.....+
T Consensus 187 ktg~---~~g~~l~gH~K~It~Lawep~hl~p~~r~las~skDg~vrIWd~~~~~~~~~l-------------------- 243 (480)
T KOG0271|consen 187 KTGQ---QIGRALRGHKKWITALAWEPLHLVPPCRRLASSSKDGSVRIWDTKLGTCVRTL-------------------- 243 (480)
T ss_pred CCCC---cccccccCcccceeEEeecccccCCCccceecccCCCCEEEEEccCceEEEEe--------------------
Confidence 6654 45677789999999999987 6779999999999999998765544333
Q ss_pred cCceeEEeeccccccccceeEEeecCCceEEEEEeeeeeecceeeecCCCCCCCeEEEEEcCCCCEEEEEeCCCcEEEEE
Q 003579 373 LKPVIAFDCAEIRERDWCNVVTCHMDTAQAYVWRLQNFVLGEHILRPCPENPTAVKACTISACGNFAVLGTAGGWIERFN 452 (809)
Q Consensus 373 ~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~v~~v~~s~~g~~l~~g~~~g~i~i~~ 452 (809)
.+|...|+|+.+-.+ .++++|+.|++|++|+
T Consensus 244 ------------------------------------------------sgHT~~VTCvrwGG~-gliySgS~DrtIkvw~ 274 (480)
T KOG0271|consen 244 ------------------------------------------------SGHTASVTCVRWGGE-GLIYSGSQDRTIKVWR 274 (480)
T ss_pred ------------------------------------------------ccCccceEEEEEcCC-ceEEecCCCceEEEEE
Confidence 367789999999765 4899999999999999
Q ss_pred CCCCceeeeeeCcccccccCccccEEEEEEc-----------CCCC-------------------------EEEEEeCcC
Q 003579 453 LQSGISRGSYLDMSERSNYAHNGEVVGVACD-----------STNT-------------------------LMISAGYHG 496 (809)
Q Consensus 453 ~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~-----------~~~~-------------------------~l~s~~~dg 496 (809)
...|.....+. +|...|+.++.+ |.++ .|++|+.|.
T Consensus 275 a~dG~~~r~lk--------GHahwvN~lalsTdy~LRtgaf~~t~~~~~~~se~~~~Al~rY~~~~~~~~erlVSgsDd~ 346 (480)
T KOG0271|consen 275 ALDGKLCRELK--------GHAHWVNHLALSTDYVLRTGAFDHTGRKPKSFSEEQKKALERYEAVLKDSGERLVSGSDDF 346 (480)
T ss_pred ccchhHHHhhc--------ccchheeeeeccchhhhhccccccccccCCChHHHHHHHHHHHHHhhccCcceeEEecCCc
Confidence 99999988876 999999999876 2233 599999999
Q ss_pred eEEEEECCC-CceeeeeecC-CCeEEEEEeeCCCEEEEEeCCCeEEEEEcCCCeEEEEEecCCCCeeeEEECCCCCEEEE
Q 003579 497 DIKVWDFKG-RDLKSRWEVG-CSLVKIVYHRVNGLLATVADDLVIRLFDVVALRMVRKFEGHTDRITDFCFSEDGKWLLS 574 (809)
Q Consensus 497 ~i~iwd~~~-~~~~~~~~~~-~~i~~~~~s~~~~~la~~~~d~~I~v~d~~~~~~~~~~~~h~~~I~~l~fspdg~~l~s 574 (809)
++.+|+-.. .+++.....+ .-|+.+.||||++++|+++.|..|++||..+|+.+..|+||-+.|..++||.|.|+|++
T Consensus 347 tlflW~p~~~kkpi~rmtgHq~lVn~V~fSPd~r~IASaSFDkSVkLW~g~tGk~lasfRGHv~~VYqvawsaDsRLlVS 426 (480)
T KOG0271|consen 347 TLFLWNPFKSKKPITRMTGHQALVNHVSFSPDGRYIASASFDKSVKLWDGRTGKFLASFRGHVAAVYQVAWSADSRLLVS 426 (480)
T ss_pred eEEEecccccccchhhhhchhhheeeEEECCCccEEEEeecccceeeeeCCCcchhhhhhhccceeEEEEeccCccEEEE
Confidence 999998653 4466555444 88999999999999999999999999999999999999999999999999999999999
Q ss_pred EeCCCeEEEEEcCCccEEEEeeeCcc-eEEEEEcCCCCeEEEEEeCCCeEEEee
Q 003579 575 SGMDGSLRIWDVILARQIDAIHVDVS-ITALSLSPNMDVLATAHVDQNGVYLWV 627 (809)
Q Consensus 575 ~s~D~~I~vwd~~~~~~i~~~~~~~~-v~~l~~spdg~~lat~~~d~~~i~lW~ 627 (809)
||.|.+++|||+.+.++..-+.+|.. |.++.|+|||..+++++.|. .+++|.
T Consensus 427 ~SkDsTLKvw~V~tkKl~~DLpGh~DEVf~vDwspDG~rV~sggkdk-v~~lw~ 479 (480)
T KOG0271|consen 427 GSKDSTLKVWDVRTKKLKQDLPGHADEVFAVDWSPDGQRVASGGKDK-VLRLWR 479 (480)
T ss_pred cCCCceEEEEEeeeeeecccCCCCCceEEEEEecCCCceeecCCCce-EEEeec
Confidence 99999999999999999988886654 99999999999999999999 599995
No 11
>KOG0306 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification]
Probab=100.00 E-value=1.4e-45 Score=379.15 Aligned_cols=485 Identities=15% Similarity=0.239 Sum_probs=395.0
Q ss_pred cCCeEEEEEEcCCeEEEEEcCccEEEEecCCCCCCcEEEEEeCCeEEEEECCe---EEEEECCee--EEEEccccccEEE
Q 003579 24 LGTENFVTVSVGKAFHIYNCAKLNLVLVGPQLPKKIRALASYRDYTFAAYGNH---IAVVKRAHQ--VATWSRHSAKVNL 98 (809)
Q Consensus 24 ~~~~~~i~~~~~~~i~iwd~~~~~~~~~~~~~~~~I~~la~~~~~~~~a~g~~---i~vw~~~~~--~~~~~~h~~~V~~ 98 (809)
++.-.++++..||+|+||+..+......+++|...|+++.|+..|..+|+|+. |.|||.-.+ ..++.||+..|+.
T Consensus 75 ~d~l~lAVGYaDGsVqif~~~s~~~~~tfngHK~AVt~l~fd~~G~rlaSGskDt~IIvwDlV~E~Gl~rL~GHkd~iT~ 154 (888)
T KOG0306|consen 75 DDILLLAVGYADGSVQIFSLESEEILITFNGHKAAVTTLKFDKIGTRLASGSKDTDIIVWDLVGEEGLFRLRGHKDSITQ 154 (888)
T ss_pred CCcceEEEEecCceEEeeccCCCceeeeecccccceEEEEEcccCceEeecCCCccEEEEEeccceeeEEeecchHHHhH
Confidence 34556688888999999999999999999999999999999999999999876 999997444 5559999999999
Q ss_pred EEEe--CCEEEEEeCCCcEEEEEcCCCccccceeeeEEcCCccccEEEEeCCCCCCEEEEEeCCCeEEEEeCCC------
Q 003579 99 LLLF--GEHILSIDIDGNMFIWAFKGIEENLAPVGHVKLDDKFTPTCIMHPDTYLNKVIVGSQEGSLQLWNIST------ 170 (809)
Q Consensus 99 l~~~--g~~l~s~~~dg~i~vWd~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~l~~~~~dg~i~lwd~~~------ 170 (809)
..|. .++|++++.|+.|++||+++..+ ..+.-.+.+.+..+++++ +.+++++.|+.+.+|++..
T Consensus 155 ~~F~~~~~~lvS~sKDs~iK~WdL~tqhC----f~Thvd~r~Eiw~l~~~~----~~lvt~~~dse~~v~~L~~~~D~~~ 226 (888)
T KOG0306|consen 155 ALFLNGDSFLVSVSKDSMIKFWDLETQHC----FETHVDHRGEIWALVLDE----KLLVTAGTDSELKVWELAFEDDEKE 226 (888)
T ss_pred HhccCCCeEEEEeccCceEEEEeccccee----eeEEecccceEEEEEEec----ceEEEEecCCceEEEEeeccccccc
Confidence 9884 58999999999999999999988 777777888888888887 4688899999999999811
Q ss_pred ------------------CceEEE----------EcCC------------------------------------------
Q 003579 171 ------------------KKKLYE----------FKGW------------------------------------------ 180 (809)
Q Consensus 171 ------------------~~~~~~----------~~~~------------------------------------------ 180 (809)
++.+.. ..++
T Consensus 227 ~~~~~s~~~~G~~~rqsk~R~i~l~~d~s~r~~~c~g~d~~~e~frI~s~~E~~k~l~Kk~k~~Kkka~t~e~~~~v~~s 306 (888)
T KOG0306|consen 227 TNRYISTKLRGTFIRQSKGREINLVTDFSDRFLVCQGADKVIELFRIRSKEEIAKILSKKLKRAKKKAETEENEDDVEKS 306 (888)
T ss_pred ccccceeeccceeeeccCCceeEEeecCcccEEEEecchhhhhheeecCHHHHHHHHHHHHHHhhhhccccccccchhhh
Confidence 001100 0000
Q ss_pred -------------CCCEEEEEEcCCCC--EEEEEeCCCeEEEEEeeC-CeE------E--EEEeccCCCcEEEEEEecCC
Q 003579 181 -------------GSSISSCVSSPALD--VVAVGCSDGKIHVHNVRY-DEE------L--VTFTHSMRGAVTALAFSSDG 236 (809)
Q Consensus 181 -------------~~~I~~l~~sp~~~--~la~g~~dg~i~iwd~~~-~~~------~--~~~~~~~~~~V~~l~fs~dg 236 (809)
...|.++.+.|.+. ..++-..+.++..|.++. +.. + .++ .+|...|.+++|+.+.
T Consensus 307 l~~~i~r~~~ir~~~kiks~dv~~~~~~~~~lv~l~nNtv~~ysl~~s~~~~p~~~~~~~i~~-~GHR~dVRsl~vS~d~ 385 (888)
T KOG0306|consen 307 LSDEIKRLETIRTSAKIKSFDVTPSGGTENTLVLLANNTVEWYSLENSGKTSPEADRTSNIEI-GGHRSDVRSLCVSSDS 385 (888)
T ss_pred HHHHHHHHHheechhheeEEEEEecCCcceeEEEeecCceEEEEeccCCCCCccccccceeee-ccchhheeEEEeecCc
Confidence 23456666666543 122226677888887765 111 1 222 3458899999999988
Q ss_pred CCEEEEEcCCCcEEEEECCCceeeeeeecccccceEEEEEecCCCEEEEEcCCCcEEEEEeeCCCCCceeEEeccCCCCC
Q 003579 237 QPLLASGASSGVISIWNLEKRRLQSVIREAHDNAIISLHFFANEPVLMSASADNSIKMWIFDTTDGDPRLLRFRSGHSAP 316 (809)
Q Consensus 237 ~~~lasg~~dg~I~iwdl~~~~~~~~~~~~h~~~V~~l~~~~~~~~l~s~s~d~~i~vw~~~~~~~~~~~~~~~~~h~~~ 316 (809)
. ++++|+ .+.|.+|+..+.+++.++. .+.+.+..|.|.++++++|...|.+.++|+... .++.....|.+.
T Consensus 386 ~-~~~Sga-~~SikiWn~~t~kciRTi~---~~y~l~~~Fvpgd~~Iv~G~k~Gel~vfdlaS~----~l~Eti~AHdga 456 (888)
T KOG0306|consen 386 I-LLASGA-GESIKIWNRDTLKCIRTIT---CGYILASKFVPGDRYIVLGTKNGELQVFDLASA----SLVETIRAHDGA 456 (888)
T ss_pred e-eeeecC-CCcEEEEEccCcceeEEec---cccEEEEEecCCCceEEEeccCCceEEEEeehh----hhhhhhhccccc
Confidence 6 666655 6789999999999999987 238999999999999999999999999998776 466677799999
Q ss_pred CeeEEEecCCCEEEEEECCCCEEEEEeeecccceecchhhHHHHHhhccchhhhhccCceeEEeeccccccccceeEEee
Q 003579 317 PLCIRFYANGRHILSAGQDRAFRLFSVIQDQQSRELSQRHVAKRARKLKMKEEELKLKPVIAFDCAEIRERDWCNVVTCH 396 (809)
Q Consensus 317 v~~i~~~~~~~~l~s~~~dg~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~ 396 (809)
+..++..||++.+++||.|.+|++||..-....
T Consensus 457 IWsi~~~pD~~g~vT~saDktVkfWdf~l~~~~----------------------------------------------- 489 (888)
T KOG0306|consen 457 IWSISLSPDNKGFVTGSADKTVKFWDFKLVVSV----------------------------------------------- 489 (888)
T ss_pred eeeeeecCCCCceEEecCCcEEEEEeEEEEecc-----------------------------------------------
Confidence 999999999999999999999999997532210
Q ss_pred cCCceEEEEEeeeeeecceeeecCCCCCCCeEEEEEcCCCCEEEEEeCCCcEEEEECCCCceeeeeeCcccccccCcccc
Q 003579 397 MDTAQAYVWRLQNFVLGEHILRPCPENPTAVKACTISACGNFAVLGTAGGWIERFNLQSGISRGSYLDMSERSNYAHNGE 476 (809)
Q Consensus 397 ~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~v~~v~~s~~g~~l~~g~~~g~i~i~~~~~~~~~~~~~~~~~~~~~~h~~~ 476 (809)
...+-++..+.. ...+ .-...|.|+.+||||++++++--|.++.+|-+.+-+..-.+ ++|.-+
T Consensus 490 -~gt~~k~lsl~~----~rtL----el~ddvL~v~~Spdgk~LaVsLLdnTVkVyflDtlKFflsL--------YGHkLP 552 (888)
T KOG0306|consen 490 -PGTQKKVLSLKH----TRTL----ELEDDVLCVSVSPDGKLLAVSLLDNTVKVYFLDTLKFFLSL--------YGHKLP 552 (888)
T ss_pred -Ccccceeeeecc----ceEE----eccccEEEEEEcCCCcEEEEEeccCeEEEEEecceeeeeee--------cccccc
Confidence 000000001100 0011 12378999999999999999999999999999998777665 599999
Q ss_pred EEEEEEcCCCCEEEEEeCcCeEEEEECCCCceeeeeec-CCCeEEEEEeeCCCEEEEEeCCCeEEEEEcCCCeEEEEEec
Q 003579 477 VVGVACDSTNTLMISAGYHGDIKVWDFKGRDLKSRWEV-GCSLVKIVYHRVNGLLATVADDLVIRLFDVVALRMVRKFEG 555 (809)
Q Consensus 477 v~~l~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~-~~~i~~~~~s~~~~~la~~~~d~~I~v~d~~~~~~~~~~~~ 555 (809)
|.++.++||+++++||+.|..|++|-+.-|.+.+.+-. ...|.++.|.|...++.+++.|+.|+-||-+..+.++.+.+
T Consensus 553 V~smDIS~DSklivTgSADKnVKiWGLdFGDCHKS~fAHdDSvm~V~F~P~~~~FFt~gKD~kvKqWDg~kFe~iq~L~~ 632 (888)
T KOG0306|consen 553 VLSMDISPDSKLIVTGSADKNVKIWGLDFGDCHKSFFAHDDSVMSVQFLPKTHLFFTCGKDGKVKQWDGEKFEEIQKLDG 632 (888)
T ss_pred eeEEeccCCcCeEEeccCCCceEEeccccchhhhhhhcccCceeEEEEcccceeEEEecCcceEEeechhhhhhheeecc
Confidence 99999999999999999999999999999998887755 48999999999999999999999999999999999999999
Q ss_pred CCCCeeeEEECCCCCEEEEEeCCCeEEEEEcCCcc
Q 003579 556 HTDRITDFCFSEDGKWLLSSGMDGSLRIWDVILAR 590 (809)
Q Consensus 556 h~~~I~~l~fspdg~~l~s~s~D~~I~vwd~~~~~ 590 (809)
|...|.+++.+|+|.+++|+|.|.+||+|.-....
T Consensus 633 H~~ev~cLav~~~G~~vvs~shD~sIRlwE~tde~ 667 (888)
T KOG0306|consen 633 HHSEVWCLAVSPNGSFVVSSSHDKSIRLWERTDEI 667 (888)
T ss_pred chheeeeeEEcCCCCeEEeccCCceeEeeeccCcc
Confidence 99999999999999999999999999999865533
No 12
>KOG1408 consensus WD40 repeat protein [Function unknown]
Probab=100.00 E-value=5.9e-43 Score=356.68 Aligned_cols=547 Identities=17% Similarity=0.228 Sum_probs=388.1
Q ss_pred CCeEEEEEEcCCeEEEEEcCccEEEEecCCCCCCcEEEEEeCCeEEEEECCe-----EEEEECC--eeEEEEccccccEE
Q 003579 25 GTENFVTVSVGKAFHIYNCAKLNLVLVGPQLPKKIRALASYRDYTFAAYGNH-----IAVVKRA--HQVATWSRHSAKVN 97 (809)
Q Consensus 25 ~~~~~i~~~~~~~i~iwd~~~~~~~~~~~~~~~~I~~la~~~~~~~~a~g~~-----i~vw~~~--~~~~~~~~h~~~V~ 97 (809)
+...++++..|..+.+||+++.++-+....+..+++|+||+++|+|+|+|.. ++||+.. ..++++..|+-.|+
T Consensus 47 p~Sgl~aYpAGCvVVlfn~~~~tQ~hlvnssRk~~t~vAfS~~GryvatGEcG~~pa~kVw~la~h~vVAEfvdHKY~vt 126 (1080)
T KOG1408|consen 47 PCSGLCAYPAGCVVVLFNVDSCTQSHLVNSSRKPLTCVAFSQNGRYVATGECGRTPASKVWSLAFHGVVAEFVDHKYNVT 126 (1080)
T ss_pred ccccceeeccCcEEEEEcccccchhheecccCcceeEEEEcCCCcEEEecccCCCccceeeeeccccchhhhhhccccce
Confidence 4456899999999999999998888888888999999999999999999874 9999974 45778999999999
Q ss_pred EEEE--eCCEEEEEeCC--CcEEEEEcCCCccccceeeeEEcCCccccEEEEeCCCCCCEEEEEeCCCeEEEEeCCCCce
Q 003579 98 LLLL--FGEHILSIDID--GNMFIWAFKGIEENLAPVGHVKLDDKFTPTCIMHPDTYLNKVIVGSQEGSLQLWNISTKKK 173 (809)
Q Consensus 98 ~l~~--~g~~l~s~~~d--g~i~vWd~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~l~~~~~dg~i~lwd~~~~~~ 173 (809)
|++| .++|+++.+.. -.|.+||...... ...-+. ...+...+|+.++ .++++.+. ..|++|.++.++.
T Consensus 127 cvaFsp~~kyvvSVGsQHDMIVnv~dWr~N~~----~asnki-ss~Vsav~fsEdg--SYfvT~gn-rHvk~wyl~~~~K 198 (1080)
T KOG1408|consen 127 CVAFSPGNKYVVSVGSQHDMIVNVNDWRVNSS----GASNKI-SSVVSAVAFSEDG--SYFVTSGN-RHVKLWYLQIQSK 198 (1080)
T ss_pred eeeecCCCcEEEeeccccceEEEhhhhhhccc----cccccc-ceeEEEEEEccCC--ceeeeeee-eeEEEEEeecccc
Confidence 9998 48999998874 4577887755433 111111 2334567799998 77888754 6799999987763
Q ss_pred EEE---EcCCCCCEEEEEEcCCCCEEEEEeCC-------------CeEEEEEeeCCeEEEEEeccCCCcEEEEEEecCCC
Q 003579 174 LYE---FKGWGSSISSCVSSPALDVVAVGCSD-------------GKIHVHNVRYDEELVTFTHSMRGAVTALAFSSDGQ 237 (809)
Q Consensus 174 ~~~---~~~~~~~I~~l~~sp~~~~la~g~~d-------------g~i~iwd~~~~~~~~~~~~~~~~~V~~l~fs~dg~ 237 (809)
... +.+...-...+. +..++++++.- |.+.-| .+.+.+-.+..-......||+.+.+
T Consensus 199 ykdpiPl~gRs~~lg~lr---~n~f~avaCg~gicAestfait~qGhLvEF--SsRRLLDKWVqcRTTnAnCIcVs~r-- 271 (1080)
T KOG1408|consen 199 YKDPIPLPGRSYFLGNLR---FNEFLAVACGVGICAESTFAITAQGHLVEF--SSRRLLDKWVQCRTTNANCICVSSR-- 271 (1080)
T ss_pred ccCCccccchhhhccccc---cchhhhhhhcCcccccceEEEecccceeee--chhhhhhhhhhhhccccceeeeecc--
Confidence 221 111111111111 12233333322 222222 1122222221111334677887754
Q ss_pred CEEEEEcCCCcEEEEECCCceeeeeeecccc-----------------------cceEEEEEecCCCEEEEEcCCCcEEE
Q 003579 238 PLLASGASSGVISIWNLEKRRLQSVIREAHD-----------------------NAIISLHFFANEPVLMSASADNSIKM 294 (809)
Q Consensus 238 ~~lasg~~dg~I~iwdl~~~~~~~~~~~~h~-----------------------~~V~~l~~~~~~~~l~s~s~d~~i~v 294 (809)
++++|+.+|.|++|+.++-..+.++...|. ....++.|.+....|.+.-.|.++++
T Consensus 272 -~I~cgCa~g~vrlFnp~tL~y~~Tlpr~halg~d~a~~~q~~~~~s~~~~a~fPD~IA~~Fdet~~klscVYndhSlYv 350 (1080)
T KOG1408|consen 272 -LIACGCAKGMVRLFNPETLDYAGTLPRSHALGSDTANLSQPEPKNSESSPAIFPDAIACQFDETTDKLSCVYNDHSLYV 350 (1080)
T ss_pred -eEEEeeccceeeecCcchhhhccccccccccccchhhcccccccccccCcccCCceeEEEecCCCceEEEEEcCceEEE
Confidence 899999999999999988766666553331 12346788888889999999999999
Q ss_pred EEeeCCCCCceeEEeccCCCCCCeeEEEec-C----------CCEEEEEECCCCEEEEEeeecccceecchhhHHHHHhh
Q 003579 295 WIFDTTDGDPRLLRFRSGHSAPPLCIRFYA-N----------GRHILSAGQDRAFRLFSVIQDQQSRELSQRHVAKRARK 363 (809)
Q Consensus 295 w~~~~~~~~~~~~~~~~~h~~~v~~i~~~~-~----------~~~l~s~~~dg~i~~wd~~~~~~~~~~~~~~~~~~~~~ 363 (809)
||++......+... .--|+..|+.+.-.| + ...+++|+.|++||+|++........+....+.....+
T Consensus 351 WDvrD~~kvgk~~s-~lyHS~ciW~Ve~~p~nv~~~~~aclp~~cF~TCSsD~TIRlW~l~~ctnn~vyrRNils~~l~k 429 (1080)
T KOG1408|consen 351 WDVRDVNKVGKCSS-MLYHSACIWDVENLPCNVHSPTAACLPRGCFTTCSSDGTIRLWDLAFCTNNQVYRRNILSANLSK 429 (1080)
T ss_pred Eeccccccccceee-eeeccceeeeeccccccccCcccccCCccceeEecCCCcEEEeecccccccceeecccchhhhhc
Confidence 99987665444433 336888888776655 1 23689999999999999987655554443333332222
Q ss_pred ccchhhhhccCceeEEeeccccccccceeEEeecCCceEEEEEeeeeeecceeeecCCCCCCCeEEEEEcCCCCEEEEEe
Q 003579 364 LKMKEEELKLKPVIAFDCAEIRERDWCNVVTCHMDTAQAYVWRLQNFVLGEHILRPCPENPTAVKACTISACGNFAVLGT 443 (809)
Q Consensus 364 ~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~v~~v~~s~~g~~l~~g~ 443 (809)
.........+- ...............-+....++++++||+|++|+.|.
T Consensus 430 i~y~d~~~q~~-------------------------------~d~~~~~fdka~~s~~d~r~G~R~~~vSp~gqhLAsGD 478 (1080)
T KOG1408|consen 430 IPYEDSTQQIM-------------------------------HDASAGIFDKALVSTCDSRFGFRALAVSPDGQHLASGD 478 (1080)
T ss_pred CccccCchhhh-------------------------------hhccCCcccccchhhcCcccceEEEEECCCcceecccC
Confidence 21111110000 00000000111111123346899999999999999999
Q ss_pred CCCcEEEEECCCCceeeeeeCcccccccCccccEEEEEEcC---CCCEEEEEeCcCeEEEEECCCCc-eeeeee------
Q 003579 444 AGGWIERFNLQSGISRGSYLDMSERSNYAHNGEVVGVACDS---TNTLMISAGYHGDIKVWDFKGRD-LKSRWE------ 513 (809)
Q Consensus 444 ~~g~i~i~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~---~~~~l~s~~~dg~i~iwd~~~~~-~~~~~~------ 513 (809)
..|.+++|++++-....... +|...|.++.++. ..++|++++.|..|++||....- ++.++.
T Consensus 479 r~GnlrVy~Lq~l~~~~~~e--------AHesEilcLeyS~p~~~~kLLASasrdRlIHV~Dv~rny~l~qtld~HSssI 550 (1080)
T KOG1408|consen 479 RGGNLRVYDLQELEYTCFME--------AHESEILCLEYSFPVLTNKLLASASRDRLIHVYDVKRNYDLVQTLDGHSSSI 550 (1080)
T ss_pred ccCceEEEEehhhhhhhhee--------cccceeEEEeecCchhhhHhhhhccCCceEEEEecccccchhhhhcccccce
Confidence 99999999999887776664 7888888888875 34778888888888888865321 111110
Q ss_pred --------------------------------------------cCCCeEEEEEeeCCCEEEEEeCCCeEEEEEcCCCeE
Q 003579 514 --------------------------------------------VGCSLVKIVYHRVNGLLATVADDLVIRLFDVVALRM 549 (809)
Q Consensus 514 --------------------------------------------~~~~i~~~~~s~~~~~la~~~~d~~I~v~d~~~~~~ 549 (809)
.+..+..|+..|..+++++++.|..|+|||+++++.
T Consensus 551 TsvKFa~~gln~~MiscGADksimFr~~qk~~~g~~f~r~t~t~~ktTlYDm~Vdp~~k~v~t~cQDrnirif~i~sgKq 630 (1080)
T KOG1408|consen 551 TSVKFACNGLNRKMISCGADKSIMFRVNQKASSGRLFPRHTQTLSKTTLYDMAVDPTSKLVVTVCQDRNIRIFDIESGKQ 630 (1080)
T ss_pred eEEEEeecCCceEEEeccCchhhheehhccccCceeccccccccccceEEEeeeCCCcceEEEEecccceEEEeccccce
Confidence 124567788888899999999999999999999999
Q ss_pred EEEEec---CCCCeeeEEECCCCCEEEEEeCCCeEEEEEcCCccEEEEeeeCcc-eEEEEEcCCCCeEEEEEeCCCeEEE
Q 003579 550 VRKFEG---HTDRITDFCFSEDGKWLLSSGMDGSLRIWDVILARQIDAIHVDVS-ITALSLSPNMDVLATAHVDQNGVYL 625 (809)
Q Consensus 550 ~~~~~~---h~~~I~~l~fspdg~~l~s~s~D~~I~vwd~~~~~~i~~~~~~~~-v~~l~~spdg~~lat~~~d~~~i~l 625 (809)
++.|+| |.+..-.+...|.|-||++...|+++.++|.-+|+++..+.+|+. |+.+.|++|.+.|++++.|+ .|++
T Consensus 631 ~k~FKgs~~~eG~lIKv~lDPSgiY~atScsdktl~~~Df~sgEcvA~m~GHsE~VTG~kF~nDCkHlISvsgDg-CIFv 709 (1080)
T KOG1408|consen 631 VKSFKGSRDHEGDLIKVILDPSGIYLATSCSDKTLCFVDFVSGECVAQMTGHSEAVTGVKFLNDCKHLISVSGDG-CIFV 709 (1080)
T ss_pred eeeecccccCCCceEEEEECCCccEEEEeecCCceEEEEeccchhhhhhcCcchheeeeeecccchhheeecCCc-eEEE
Confidence 999986 667788899999999999999999999999999999999988876 99999999999999999999 5999
Q ss_pred eec
Q 003579 626 WVN 628 (809)
Q Consensus 626 W~~ 628 (809)
|.+
T Consensus 710 W~l 712 (1080)
T KOG1408|consen 710 WKL 712 (1080)
T ss_pred EEC
Confidence 986
No 13
>KOG0272 consensus U4/U6 small nuclear ribonucleoprotein Prp4 (contains WD40 repeats) [RNA processing and modification]
Probab=100.00 E-value=1.1e-42 Score=335.76 Aligned_cols=283 Identities=20% Similarity=0.325 Sum_probs=262.0
Q ss_pred CCCCCEEEEEEcCCCCEEEEEeCCCeEEEEEeeCCeEEEEEeccCCCcEEEEEEecC-CCCEEEEEcCCCcEEEEECCCc
Q 003579 179 GWGSSISSCVSSPALDVVAVGCSDGKIHVHNVRYDEELVTFTHSMRGAVTALAFSSD-GQPLLASGASSGVISIWNLEKR 257 (809)
Q Consensus 179 ~~~~~I~~l~~sp~~~~la~g~~dg~i~iwd~~~~~~~~~~~~~~~~~V~~l~fs~d-g~~~lasg~~dg~I~iwdl~~~ 257 (809)
+-..+|..+.||++++.||+|+.+|.+++|+..+...+.+|.+| .+.|.++.|+|. ...-||+|+.||++++|++++.
T Consensus 173 gd~rPis~~~fS~ds~~laT~swsG~~kvW~~~~~~~~~~l~gH-~~~v~~~~fhP~~~~~~lat~s~Dgtvklw~~~~e 251 (459)
T KOG0272|consen 173 GDTRPISGCSFSRDSKHLATGSWSGLVKVWSVPQCNLLQTLRGH-TSRVGAAVFHPVDSDLNLATASADGTVKLWKLSQE 251 (459)
T ss_pred cCCCcceeeEeecCCCeEEEeecCCceeEeecCCcceeEEEecc-ccceeeEEEccCCCccceeeeccCCceeeeccCCC
Confidence 45789999999999999999999999999999999999999887 899999999998 3447999999999999999999
Q ss_pred eeeeeeecccccceEEEEEecCCCEEEEEcCCCcEEEEEeeCCCCCceeEEeccCCCCCCeeEEEecCCCEEEEEECCCC
Q 003579 258 RLQSVIREAHDNAIISLHFFANEPVLMSASADNSIKMWIFDTTDGDPRLLRFRSGHSAPPLCIRFYANGRHILSAGQDRA 337 (809)
Q Consensus 258 ~~~~~~~~~h~~~V~~l~~~~~~~~l~s~s~d~~i~vw~~~~~~~~~~~~~~~~~h~~~v~~i~~~~~~~~l~s~~~dg~ 337 (809)
.++..+. +|...|..++|+|+|++|+|++.|.+-++||+.+. ..+....||+.+|.+++|.+||..+++||.|..
T Consensus 252 ~~l~~l~-gH~~RVs~VafHPsG~~L~TasfD~tWRlWD~~tk----~ElL~QEGHs~~v~~iaf~~DGSL~~tGGlD~~ 326 (459)
T KOG0272|consen 252 TPLQDLE-GHLARVSRVAFHPSGKFLGTASFDSTWRLWDLETK----SELLLQEGHSKGVFSIAFQPDGSLAATGGLDSL 326 (459)
T ss_pred cchhhhh-cchhhheeeeecCCCceeeecccccchhhcccccc----hhhHhhcccccccceeEecCCCceeeccCccch
Confidence 9999998 99999999999999999999999999999999887 345566799999999999999999999999999
Q ss_pred EEEEEeeecccceecchhhHHHHHhhccchhhhhccCceeEEeeccccccccceeEEeecCCceEEEEEeeeeeecceee
Q 003579 338 FRLFSVIQDQQSRELSQRHVAKRARKLKMKEEELKLKPVIAFDCAEIRERDWCNVVTCHMDTAQAYVWRLQNFVLGEHIL 417 (809)
Q Consensus 338 i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~ 417 (809)
-++||++++.++..
T Consensus 327 ~RvWDlRtgr~im~------------------------------------------------------------------ 340 (459)
T KOG0272|consen 327 GRVWDLRTGRCIMF------------------------------------------------------------------ 340 (459)
T ss_pred hheeecccCcEEEE------------------------------------------------------------------
Confidence 99999876643221
Q ss_pred ecCCCCCCCeEEEEEcCCCCEEEEEeCCCcEEEEECCCCceeeeeeCcccccccCccccEEEEEEcCCCCEEEEEeCcCe
Q 003579 418 RPCPENPTAVKACTISACGNFAVLGTAGGWIERFNLQSGISRGSYLDMSERSNYAHNGEVVGVACDSTNTLMISAGYHGD 497 (809)
Q Consensus 418 ~~~~~~~~~v~~v~~s~~g~~l~~g~~~g~i~i~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~l~s~~~dg~ 497 (809)
+ .+|..+|.+++|+|+|..|+||+.|++
T Consensus 341 --------------------------------------------L--------~gH~k~I~~V~fsPNGy~lATgs~Dnt 368 (459)
T KOG0272|consen 341 --------------------------------------------L--------AGHIKEILSVAFSPNGYHLATGSSDNT 368 (459)
T ss_pred --------------------------------------------e--------cccccceeeEeECCCceEEeecCCCCc
Confidence 1 289999999999999999999999999
Q ss_pred EEEEECCCCceeeeeecC-CCeEEEEEee-CCCEEEEEeCCCeEEEEEcCCCeEEEEEecCCCCeeeEEECCCCCEEEEE
Q 003579 498 IKVWDFKGRDLKSRWEVG-CSLVKIVYHR-VNGLLATVADDLVIRLFDVVALRMVRKFEGHTDRITDFCFSEDGKWLLSS 575 (809)
Q Consensus 498 i~iwd~~~~~~~~~~~~~-~~i~~~~~s~-~~~~la~~~~d~~I~v~d~~~~~~~~~~~~h~~~I~~l~fspdg~~l~s~ 575 (809)
++|||++..+.+.++..+ .-|+.+.|+| .|.+|++++.|+++++|...++.+++.+.||.+.|.+++.++|+.+++|+
T Consensus 369 ~kVWDLR~r~~ly~ipAH~nlVS~Vk~~p~~g~fL~TasyD~t~kiWs~~~~~~~ksLaGHe~kV~s~Dis~d~~~i~t~ 448 (459)
T KOG0272|consen 369 CKVWDLRMRSELYTIPAHSNLVSQVKYSPQEGYFLVTASYDNTVKIWSTRTWSPLKSLAGHEGKVISLDISPDSQAIATS 448 (459)
T ss_pred EEEeeecccccceecccccchhhheEecccCCeEEEEcccCcceeeecCCCcccchhhcCCccceEEEEeccCCceEEEe
Confidence 999999999998888776 7889999998 78899999999999999999999999999999999999999999999999
Q ss_pred eCCCeEEEEE
Q 003579 576 GMDGSLRIWD 585 (809)
Q Consensus 576 s~D~~I~vwd 585 (809)
+.|+++++|.
T Consensus 449 s~DRT~KLW~ 458 (459)
T KOG0272|consen 449 SFDRTIKLWR 458 (459)
T ss_pred ccCceeeecc
Confidence 9999999995
No 14
>KOG0272 consensus U4/U6 small nuclear ribonucleoprotein Prp4 (contains WD40 repeats) [RNA processing and modification]
Probab=100.00 E-value=1.7e-42 Score=334.35 Aligned_cols=279 Identities=21% Similarity=0.386 Sum_probs=261.4
Q ss_pred CCcEEEEEEecCCCCEEEEEcCCCcEEEEECCCceeeeeeecccccceEEEEEecC--CCEEEEEcCCCcEEEEEeeCCC
Q 003579 224 RGAVTALAFSSDGQPLLASGASSGVISIWNLEKRRLQSVIREAHDNAIISLHFFAN--EPVLMSASADNSIKMWIFDTTD 301 (809)
Q Consensus 224 ~~~V~~l~fs~dg~~~lasg~~dg~I~iwdl~~~~~~~~~~~~h~~~V~~l~~~~~--~~~l~s~s~d~~i~vw~~~~~~ 301 (809)
..+|..+.|++|+. +|+||+.+|.+++|+..+...+.++. +|.+.|.++.|+|. +..|+|++.||++++|+++..
T Consensus 175 ~rPis~~~fS~ds~-~laT~swsG~~kvW~~~~~~~~~~l~-gH~~~v~~~~fhP~~~~~~lat~s~Dgtvklw~~~~e- 251 (459)
T KOG0272|consen 175 TRPISGCSFSRDSK-HLATGSWSGLVKVWSVPQCNLLQTLR-GHTSRVGAAVFHPVDSDLNLATASADGTVKLWKLSQE- 251 (459)
T ss_pred CCcceeeEeecCCC-eEEEeecCCceeEeecCCcceeEEEe-ccccceeeEEEccCCCccceeeeccCCceeeeccCCC-
Confidence 67999999999999 99999999999999999999999999 99999999999997 569999999999999998876
Q ss_pred CCceeEEeccCCCCCCeeEEEecCCCEEEEEECCCCEEEEEeeecccceecchhhHHHHHhhccchhhhhccCceeEEee
Q 003579 302 GDPRLLRFRSGHSAPPLCIRFYANGRHILSAGQDRAFRLFSVIQDQQSRELSQRHVAKRARKLKMKEEELKLKPVIAFDC 381 (809)
Q Consensus 302 ~~~~~~~~~~~h~~~v~~i~~~~~~~~l~s~~~dg~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~ 381 (809)
.++..+.+|...|..++|+|+|++|.+++.|.+-++||+.+....-.
T Consensus 252 ---~~l~~l~gH~~RVs~VafHPsG~~L~TasfD~tWRlWD~~tk~ElL~------------------------------ 298 (459)
T KOG0272|consen 252 ---TPLQDLEGHLARVSRVAFHPSGKFLGTASFDSTWRLWDLETKSELLL------------------------------ 298 (459)
T ss_pred ---cchhhhhcchhhheeeeecCCCceeeecccccchhhcccccchhhHh------------------------------
Confidence 57778889999999999999999999999999999999876542211
Q ss_pred ccccccccceeEEeecCCceEEEEEeeeeeecceeeecCCCCCCCeEEEEEcCCCCEEEEEeCCCcEEEEECCCCceeee
Q 003579 382 AEIRERDWCNVVTCHMDTAQAYVWRLQNFVLGEHILRPCPENPTAVKACTISACGNFAVLGTAGGWIERFNLQSGISRGS 461 (809)
Q Consensus 382 ~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~v~~v~~s~~g~~l~~g~~~g~i~i~~~~~~~~~~~ 461 (809)
T Consensus 299 -------------------------------------------------------------------------------- 298 (459)
T KOG0272|consen 299 -------------------------------------------------------------------------------- 298 (459)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred eeCcccccccCccccEEEEEEcCCCCEEEEEeCcCeEEEEECCCCceeeeeecC-CCeEEEEEeeCCCEEEEEeCCCeEE
Q 003579 462 YLDMSERSNYAHNGEVVGVACDSTNTLMISAGYHGDIKVWDFKGRDLKSRWEVG-CSLVKIVYHRVNGLLATVADDLVIR 540 (809)
Q Consensus 462 ~~~~~~~~~~~h~~~v~~l~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~-~~i~~~~~s~~~~~la~~~~d~~I~ 540 (809)
..+|...|.+++|.+||.+++|||.|..-+|||++++.++..+..+ .+|..+.|+|+|-.+|+|+.|++++
T Consensus 299 --------QEGHs~~v~~iaf~~DGSL~~tGGlD~~~RvWDlRtgr~im~L~gH~k~I~~V~fsPNGy~lATgs~Dnt~k 370 (459)
T KOG0272|consen 299 --------QEGHSKGVFSIAFQPDGSLAATGGLDSLGRVWDLRTGRCIMFLAGHIKEILSVAFSPNGYHLATGSSDNTCK 370 (459)
T ss_pred --------hcccccccceeEecCCCceeeccCccchhheeecccCcEEEEecccccceeeEeECCCceEEeecCCCCcEE
Confidence 1389999999999999999999999999999999999999999877 8999999999999999999999999
Q ss_pred EEEcCCCeEEEEEecCCCCeeeEEECC-CCCEEEEEeCCCeEEEEEcCCccEEEEeeeCcc-eEEEEEcCCCCeEEEEEe
Q 003579 541 LFDVVALRMVRKFEGHTDRITDFCFSE-DGKWLLSSGMDGSLRIWDVILARQIDAIHVDVS-ITALSLSPNMDVLATAHV 618 (809)
Q Consensus 541 v~d~~~~~~~~~~~~h~~~I~~l~fsp-dg~~l~s~s~D~~I~vwd~~~~~~i~~~~~~~~-v~~l~~spdg~~lat~~~ 618 (809)
|||++..+.+.++.+|.+-|+.+.|+| .|.+|+|+|.|++++||.-.+..+++.+.+|.. |.++..+|||++++|++.
T Consensus 371 VWDLR~r~~ly~ipAH~nlVS~Vk~~p~~g~fL~TasyD~t~kiWs~~~~~~~ksLaGHe~kV~s~Dis~d~~~i~t~s~ 450 (459)
T KOG0272|consen 371 VWDLRMRSELYTIPAHSNLVSQVKYSPQEGYFLVTASYDNTVKIWSTRTWSPLKSLAGHEGKVISLDISPDSQAIATSSF 450 (459)
T ss_pred EeeecccccceecccccchhhheEecccCCeEEEEcccCcceeeecCCCcccchhhcCCccceEEEEeccCCceEEEecc
Confidence 999999999999999999999999999 789999999999999999999999999998876 999999999999999999
Q ss_pred CCCeEEEee
Q 003579 619 DQNGVYLWV 627 (809)
Q Consensus 619 d~~~i~lW~ 627 (809)
|. ++++|.
T Consensus 451 DR-T~KLW~ 458 (459)
T KOG0272|consen 451 DR-TIKLWR 458 (459)
T ss_pred Cc-eeeecc
Confidence 98 799996
No 15
>KOG1063 consensus RNA polymerase II elongator complex, subunit ELP2, WD repeat superfamily [Chromatin structure and dynamics; Transcription]
Probab=100.00 E-value=1.5e-38 Score=324.90 Aligned_cols=582 Identities=17% Similarity=0.197 Sum_probs=389.3
Q ss_pred CCcceEEEEcCCeEEEEEEcCCeEEEEEcCccEEEEecCCCCCCcEEEEEeCCeE---EEEECCe---EEEEECCe----
Q 003579 15 SSVPFSVQRLGTENFVTVSVGKAFHIYNCAKLNLVLVGPQLPKKIRALASYRDYT---FAAYGNH---IAVVKRAH---- 84 (809)
Q Consensus 15 ~~v~~~~~~~~~~~~i~~~~~~~i~iwd~~~~~~~~~~~~~~~~I~~la~~~~~~---~~a~g~~---i~vw~~~~---- 84 (809)
+.+|-.... +...+++++.+.+|.+||..+-..+...++|..+|+|+.+-|... ++.+|+. |.+|+...
T Consensus 14 ~R~~~v~sw-~~~~~vafGa~~~Iav~dp~k~~i~t~l~GH~a~VnC~~~l~~s~~~a~~vsG~sD~~v~lW~l~~~~~~ 92 (764)
T KOG1063|consen 14 NRVPKVSSW-GPGGLVAFGAGPAIAVADPEKILIVTTLDGHVARVNCVHWLPTSEIVAEMVSGDSDGRVILWKLRDEYLI 92 (764)
T ss_pred ccccccccc-cccceEEecCCceEEEeCcccceeEEeccCCccceEEEEEcccccccceEEEccCCCcEEEEEEeehheE
Confidence 455544333 566789999999999999999877888899999999999988866 5555543 99998652
Q ss_pred eEEEEccccccEEEEEEeCCEEEEEeCCCcEEEEEcCCCccccceeeeEEcCCcc--ccEEEEeCCCCCCEEEEEeCCCe
Q 003579 85 QVATWSRHSAKVNLLLLFGEHILSIDIDGNMFIWAFKGIEENLAPVGHVKLDDKF--TPTCIMHPDTYLNKVIVGSQEGS 162 (809)
Q Consensus 85 ~~~~~~~h~~~V~~l~~~g~~l~s~~~dg~i~vWd~~~~~~~~~~~~~~~~~~~~--~~~~~~~p~~~~~~l~~~~~dg~ 162 (809)
.+.++.+|...+.++.-.-......+.|+.+.+||.+..+... ...+.+..+. ....++.|+...-.++.|+.+..
T Consensus 93 ~i~~~~g~~~~~~cv~a~~~~~~~~~ad~~v~vw~~~~~e~~~--~~~~rf~~k~~ipLcL~~~~~~~~~lla~Ggs~~~ 170 (764)
T KOG1063|consen 93 KIYTIQGHCKECVCVVARSSVMTCKAADGTVSVWDKQQDEVFL--LAVLRFEIKEAIPLCLAALKNNKTFLLACGGSKFV 170 (764)
T ss_pred EEEeecCcceeEEEEEeeeeEEEeeccCceEEEeecCCCceee--ehheehhhhhHhhHHHhhhccCCcEEEEecCcceE
Confidence 3445778887777776433333333679999999996655211 2223333222 22223445332124666777778
Q ss_pred EEEEeCCC--CceEEEEcCCCCCEEEEEEcCCCC---EEEEEeCCCeEEEEEeeCCe-----------------------
Q 003579 163 LQLWNIST--KKKLYEFKGWGSSISSCVSSPALD---VVAVGCSDGKIHVHNVRYDE----------------------- 214 (809)
Q Consensus 163 i~lwd~~~--~~~~~~~~~~~~~I~~l~~sp~~~---~la~g~~dg~i~iwd~~~~~----------------------- 214 (809)
|.++.-.+ .+.+..+.||...|.+++|...+. +||+++.|..|+||.+.-+.
T Consensus 171 v~~~s~~~d~f~~v~el~GH~DWIrsl~f~~~~~~~~~laS~SQD~yIRiW~i~~~~~~~~~~~e~~~t~~~~~~~f~~l 250 (764)
T KOG1063|consen 171 VDLYSSSADSFARVAELEGHTDWIRSLAFARLGGDDLLLASSSQDRYIRIWRIVLGDDEDSNEREDSLTTLSNLPVFMIL 250 (764)
T ss_pred EEEeccCCcceeEEEEeeccchhhhhhhhhccCCCcEEEEecCCceEEEEEEEEecCCccccccccccccccCCceeeee
Confidence 88886543 356788999999999999987654 89999999999999986332
Q ss_pred -EEE------EEeccCCCcEEEEEEecCCCCEEEEEcCCCcEEEEECCCc--eeeeeee----cccccceEEEEEecCCC
Q 003579 215 -ELV------TFTHSMRGAVTALAFSSDGQPLLASGASSGVISIWNLEKR--RLQSVIR----EAHDNAIISLHFFANEP 281 (809)
Q Consensus 215 -~~~------~~~~~~~~~V~~l~fs~dg~~~lasg~~dg~I~iwdl~~~--~~~~~~~----~~h~~~V~~l~~~~~~~ 281 (809)
.+. .+..+|.+.|+++.|+|.+. .|.+++.|.++.+|...+. --+...+ .+...+..+..|+|++.
T Consensus 251 ~~i~~~is~eall~GHeDWV~sv~W~p~~~-~LLSASaDksmiiW~pd~~tGiWv~~vRlGe~gg~a~GF~g~lw~~n~~ 329 (764)
T KOG1063|consen 251 EEIQYRISFEALLMGHEDWVYSVWWHPEGL-DLLSASADKSMIIWKPDENTGIWVDVVRLGEVGGSAGGFWGGLWSPNSN 329 (764)
T ss_pred eeEEEEEehhhhhcCcccceEEEEEccchh-hheecccCcceEEEecCCccceEEEEEEeecccccccceeeEEEcCCCC
Confidence 111 12246789999999999997 6788999999999987655 2222222 13355688999999999
Q ss_pred EEEEEcCCCcEEEEEeeCCCCCceeEEeccCCCCCCeeEEEecCCCEEEEEECCCCEEEEEeeecccceecchhhHHHHH
Q 003579 282 VLMSASADNSIKMWIFDTTDGDPRLLRFRSGHSAPPLCIRFYANGRHILSAGQDRAFRLFSVIQDQQSRELSQRHVAKRA 361 (809)
Q Consensus 282 ~l~s~s~d~~i~vw~~~~~~~~~~~~~~~~~h~~~v~~i~~~~~~~~l~s~~~dg~i~~wd~~~~~~~~~~~~~~~~~~~ 361 (809)
.+++-+.-|..++|. ......+.......||.+.|+.+.|+|.|.+|++.|.|.+-|+|..-..++
T Consensus 330 ~ii~~g~~Gg~hlWk-t~d~~~w~~~~~iSGH~~~V~dv~W~psGeflLsvs~DQTTRlFa~wg~q~------------- 395 (764)
T KOG1063|consen 330 VIIAHGRTGGFHLWK-TKDKTFWTQEPVISGHVDGVKDVDWDPSGEFLLSVSLDQTTRLFARWGRQQ------------- 395 (764)
T ss_pred EEEEecccCcEEEEe-ccCccceeeccccccccccceeeeecCCCCEEEEeccccceeeeccccccc-------------
Confidence 999999999999997 333345566777899999999999999999999999999999986431111
Q ss_pred hhccchhhhhccCceeEEeeccccccccceeEEeecCCceEEEEEeeeeeecceeeecCCCCCCCeEEEE-----EcCCC
Q 003579 362 RKLKMKEEELKLKPVIAFDCAEIRERDWCNVVTCHMDTAQAYVWRLQNFVLGEHILRPCPENPTAVKACT-----ISACG 436 (809)
Q Consensus 362 ~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~v~~v~-----~s~~g 436 (809)
...++.-|.+...+....+.-..+..+..+.+++.+|+|+. ...+. ..-..+...+ ..|+|
T Consensus 396 -----~wHEiaRPQiHGyDl~c~~~vn~~~~FVSgAdEKVlRvF~a------Pk~fv---~~l~~i~g~~~~~~~~~p~g 461 (764)
T KOG1063|consen 396 -----EWHEIARPQIHGYDLTCLSFVNEDLQFVSGADEKVLRVFEA------PKSFV---KSLMAICGKCFKGSDELPDG 461 (764)
T ss_pred -----ceeeecccccccccceeeehccCCceeeecccceeeeeecC------cHHHH---HHHHHHhCccccCchhcccc
Confidence 01222233333333322222222223333333333333220 00000 0000111100 01111
Q ss_pred -CEEEEEeCCCcEEEEECCCCcee------------eeeeCcc-------------cccccCccccEEEEEEcCCCCEEE
Q 003579 437 -NFAVLGTAGGWIERFNLQSGISR------------GSYLDMS-------------ERSNYAHNGEVVGVACDSTNTLMI 490 (809)
Q Consensus 437 -~~l~~g~~~g~i~i~~~~~~~~~------------~~~~~~~-------------~~~~~~h~~~v~~l~~~~~~~~l~ 490 (809)
+.-+.|-++.-+..=...+|..- ..+..++ ...+++|...|.+++.+|++++++
T Consensus 462 A~VpaLGLSnKa~~~~e~~~G~~~~~~~et~~~~~p~~L~ePP~EdqLq~~tLwPEv~KLYGHGyEv~~l~~s~~gnliA 541 (764)
T KOG1063|consen 462 ANVPALGLSNKAFFPGETNTGGEAAVCAETPLAAAPCELTEPPTEDQLQQNTLWPEVHKLYGHGYEVYALAISPTGNLIA 541 (764)
T ss_pred cccccccccCCCCcccccccccccceeeecccccCchhccCCChHHHHHHhccchhhHHhccCceeEEEEEecCCCCEEe
Confidence 11111222211111111112110 0000000 015689999999999999999999
Q ss_pred EEeCcC-----eEEEEECCCCceeeeeecC-CCeEEEEEeeCCCEEEEEeCCCeEEEEEcCCCeE----EEEEecCCCCe
Q 003579 491 SAGYHG-----DIKVWDFKGRDLKSRWEVG-CSLVKIVYHRVNGLLATVADDLVIRLFDVVALRM----VRKFEGHTDRI 560 (809)
Q Consensus 491 s~~~dg-----~i~iwd~~~~~~~~~~~~~-~~i~~~~~s~~~~~la~~~~d~~I~v~d~~~~~~----~~~~~~h~~~I 560 (809)
+++... .|++|+..+-.....+..+ -.|+.++||||+++|++++.|.++.+|....... ....+.|+.-|
T Consensus 542 SaCKS~~~ehAvI~lw~t~~W~~~~~L~~HsLTVT~l~FSpdg~~LLsvsRDRt~sl~~~~~~~~~e~~fa~~k~HtRII 621 (764)
T KOG1063|consen 542 SACKSSLKEHAVIRLWNTANWLQVQELEGHSLTVTRLAFSPDGRYLLSVSRDRTVSLYEVQEDIKDEFRFACLKAHTRII 621 (764)
T ss_pred ehhhhCCccceEEEEEeccchhhhheecccceEEEEEEECCCCcEEEEeecCceEEeeeeecccchhhhhccccccceEE
Confidence 998543 4899999988887777665 7999999999999999999999999998754321 23367899999
Q ss_pred eeEEECCCCCEEEEEeCCCeEEEEEcCCc--cEE---EEeeeCcceEEEEEcCC-----CCeEEEEEeCCCeEEEeecC
Q 003579 561 TDFCFSEDGKWLLSSGMDGSLRIWDVILA--RQI---DAIHVDVSITALSLSPN-----MDVLATAHVDQNGVYLWVNR 629 (809)
Q Consensus 561 ~~l~fspdg~~l~s~s~D~~I~vwd~~~~--~~i---~~~~~~~~v~~l~~spd-----g~~lat~~~d~~~i~lW~~~ 629 (809)
.+..|+||+.+++|+|.|.+|+||..+.+ +.+ ..+.+..+|+++++.|- +..++.|-..| -|+||..+
T Consensus 622 WdcsW~pde~~FaTaSRDK~VkVW~~~~~~d~~i~~~a~~~~~~aVTAv~~~~~~~~e~~~~vavGle~G-eI~l~~~~ 699 (764)
T KOG1063|consen 622 WDCSWSPDEKYFATASRDKKVKVWEEPDLRDKYISRFACLKFSLAVTAVAYLPVDHNEKGDVVAVGLEKG-EIVLWRRK 699 (764)
T ss_pred EEcccCcccceeEEecCCceEEEEeccCchhhhhhhhchhccCCceeeEEeeccccccccceEEEEeccc-EEEEEecc
Confidence 99999999999999999999999999887 444 34556778999999872 23556666666 59999954
No 16
>KOG0296 consensus Angio-associated migratory cell protein (contains WD40 repeats) [Function unknown]
Probab=100.00 E-value=2e-39 Score=307.70 Aligned_cols=341 Identities=21% Similarity=0.296 Sum_probs=300.9
Q ss_pred ceEEEEcCCCCCEEEEEEcCCCCEEEEEeCCCeEEEEEeeCCeEEEEEeccCCCcEEEEEEecCCCCEEEEEcCCCcEEE
Q 003579 172 KKLYEFKGWGSSISSCVSSPALDVVAVGCSDGKIHVHNVRYDEELVTFTHSMRGAVTALAFSSDGQPLLASGASSGVISI 251 (809)
Q Consensus 172 ~~~~~~~~~~~~I~~l~~sp~~~~la~g~~dg~i~iwd~~~~~~~~~~~~~~~~~V~~l~fs~dg~~~lasg~~dg~I~i 251 (809)
.-+.+|..|...|.+++.+|+.+++|+|+.|..-.+|++.++..+..+..| +..|+++.|+.||. +||+|+.+|.|+|
T Consensus 55 dS~~tF~~H~~svFavsl~P~~~l~aTGGgDD~AflW~~~~ge~~~eltgH-KDSVt~~~Fshdgt-lLATGdmsG~v~v 132 (399)
T KOG0296|consen 55 DSLVTFDKHTDSVFAVSLHPNNNLVATGGGDDLAFLWDISTGEFAGELTGH-KDSVTCCSFSHDGT-LLATGDMSGKVLV 132 (399)
T ss_pred cceeehhhcCCceEEEEeCCCCceEEecCCCceEEEEEccCCcceeEecCC-CCceEEEEEccCce-EEEecCCCccEEE
Confidence 456789999999999999999999999999999999999999988888876 89999999999999 9999999999999
Q ss_pred EECCCceeeeeeecccccceEEEEEecCCCEEEEEcCCCcEEEEEeeCCCCCceeEEeccCCCCCCeeEEEecCCCEEEE
Q 003579 252 WNLEKRRLQSVIREAHDNAIISLHFFANEPVLMSASADNSIKMWIFDTTDGDPRLLRFRSGHSAPPLCIRFYANGRHILS 331 (809)
Q Consensus 252 wdl~~~~~~~~~~~~h~~~V~~l~~~~~~~~l~s~s~d~~i~vw~~~~~~~~~~~~~~~~~h~~~v~~i~~~~~~~~l~s 331 (809)
|...++.....+. ..-+.+.-+.|+|.+.+|+.|+.||++.+|.+... ...+.+.||..++++-.|.|+|+.+++
T Consensus 133 ~~~stg~~~~~~~-~e~~dieWl~WHp~a~illAG~~DGsvWmw~ip~~----~~~kv~~Gh~~~ct~G~f~pdGKr~~t 207 (399)
T KOG0296|consen 133 FKVSTGGEQWKLD-QEVEDIEWLKWHPRAHILLAGSTDGSVWMWQIPSQ----ALCKVMSGHNSPCTCGEFIPDGKRILT 207 (399)
T ss_pred EEcccCceEEEee-cccCceEEEEecccccEEEeecCCCcEEEEECCCc----ceeeEecCCCCCcccccccCCCceEEE
Confidence 9999999888886 56678899999999999999999999999988765 467778899999999999999999999
Q ss_pred EECCCCEEEEEeeecccceecchhhHHHHHhhccchhhhhccCceeEEeeccccccccceeEEeecCCceEEEEEeeeee
Q 003579 332 AGQDRAFRLFSVIQDQQSRELSQRHVAKRARKLKMKEEELKLKPVIAFDCAEIRERDWCNVVTCHMDTAQAYVWRLQNFV 411 (809)
Q Consensus 332 ~~~dg~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~ 411 (809)
+..||+|++|+..++++...+.+.
T Consensus 208 gy~dgti~~Wn~ktg~p~~~~~~~-------------------------------------------------------- 231 (399)
T KOG0296|consen 208 GYDDGTIIVWNPKTGQPLHKITQA-------------------------------------------------------- 231 (399)
T ss_pred EecCceEEEEecCCCceeEEeccc--------------------------------------------------------
Confidence 999999999999988766555431
Q ss_pred ecceeeecCCCCCCCeEEEEEcCCCCEEEEEeCCCcEEEEECCCCceeeeeeCcccccccCccccEEEEEEc---CCCCE
Q 003579 412 LGEHILRPCPENPTAVKACTISACGNFAVLGTAGGWIERFNLQSGISRGSYLDMSERSNYAHNGEVVGVACD---STNTL 488 (809)
Q Consensus 412 ~~~~~~~~~~~~~~~v~~v~~s~~g~~l~~g~~~g~i~i~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~---~~~~~ 488 (809)
.....+++.++..+..++.|..++.+++.+..+|+.+.............+...+.++.+. ..-.+
T Consensus 232 -----------e~~~~~~~~~~~~~~~~~~g~~e~~~~~~~~~sgKVv~~~n~~~~~l~~~~e~~~esve~~~~ss~lpL 300 (399)
T KOG0296|consen 232 -----------EGLELPCISLNLAGSTLTKGNSEGVACGVNNGSGKVVNCNNGTVPELKPSQEELDESVESIPSSSKLPL 300 (399)
T ss_pred -----------ccCcCCccccccccceeEeccCCccEEEEccccceEEEecCCCCccccccchhhhhhhhhcccccccch
Confidence 1145667788888888999999999999998888887776532222233555555555554 45578
Q ss_pred EEEEeCcCeEEEEECCCCceeeeeecCCCeEEEEEeeCCCEEEEEeCCCeEEEEEcCCCeEEEEEecCCCCeeeEEECCC
Q 003579 489 MISAGYHGDIKVWDFKGRDLKSRWEVGCSLVKIVYHRVNGLLATVADDLVIRLFDVVALRMVRKFEGHTDRITDFCFSED 568 (809)
Q Consensus 489 l~s~~~dg~i~iwd~~~~~~~~~~~~~~~i~~~~~s~~~~~la~~~~d~~I~v~d~~~~~~~~~~~~h~~~I~~l~fspd 568 (809)
.|+|+.||+|.|||+...++++...+..+|+.+.|-+ ..+|++++.+|.|+.||.++|+++.++.||...|.+++++|+
T Consensus 301 ~A~G~vdG~i~iyD~a~~~~R~~c~he~~V~~l~w~~-t~~l~t~c~~g~v~~wDaRtG~l~~~y~GH~~~Il~f~ls~~ 379 (399)
T KOG0296|consen 301 AACGSVDGTIAIYDLAASTLRHICEHEDGVTKLKWLN-TDYLLTACANGKVRQWDARTGQLKFTYTGHQMGILDFALSPQ 379 (399)
T ss_pred hhcccccceEEEEecccchhheeccCCCceEEEEEcC-cchheeeccCceEEeeeccccceEEEEecCchheeEEEEcCC
Confidence 8999999999999999999999999999999999998 889999999999999999999999999999999999999999
Q ss_pred CCEEEEEeCCCeEEEEEcC
Q 003579 569 GKWLLSSGMDGSLRIWDVI 587 (809)
Q Consensus 569 g~~l~s~s~D~~I~vwd~~ 587 (809)
.++++|+|.|++.+||+++
T Consensus 380 ~~~vvT~s~D~~a~VF~v~ 398 (399)
T KOG0296|consen 380 KRLVVTVSDDNTALVFEVP 398 (399)
T ss_pred CcEEEEecCCCeEEEEecC
Confidence 9999999999999999976
No 17
>KOG0286 consensus G-protein beta subunit [General function prediction only]
Probab=100.00 E-value=2.9e-39 Score=297.61 Aligned_cols=289 Identities=19% Similarity=0.353 Sum_probs=268.0
Q ss_pred EEEeccCCCcEEEEEEecCCCCEEEEEcCCCcEEEEECCCceeeeeeecccccceEEEEEecCCCEEEEEcCCCcEEEEE
Q 003579 217 VTFTHSMRGAVTALAFSSDGQPLLASGASSGVISIWNLEKRRLQSVIREAHDNAIISLHFFANEPVLMSASADNSIKMWI 296 (809)
Q Consensus 217 ~~~~~~~~~~V~~l~fs~dg~~~lasg~~dg~I~iwdl~~~~~~~~~~~~h~~~V~~l~~~~~~~~l~s~s~d~~i~vw~ 296 (809)
+.+++| .+.|.++.|++|++ .+++++.||.+.|||.-+...++.+. .....|..++|+|.++++++|+-|+...||+
T Consensus 49 r~LkGH-~~Ki~~~~ws~Dsr-~ivSaSqDGklIvWDs~TtnK~haip-l~s~WVMtCA~sPSg~~VAcGGLdN~Csiy~ 125 (343)
T KOG0286|consen 49 RTLKGH-LNKIYAMDWSTDSR-RIVSASQDGKLIVWDSFTTNKVHAIP-LPSSWVMTCAYSPSGNFVACGGLDNKCSIYP 125 (343)
T ss_pred EEeccc-ccceeeeEecCCcC-eEEeeccCCeEEEEEcccccceeEEe-cCceeEEEEEECCCCCeEEecCcCceeEEEe
Confidence 455554 89999999999999 89999999999999999988888887 7788999999999999999999999999999
Q ss_pred eeCC--CCCceeEEeccCCCCCCeeEEEecCCCEEEEEECCCCEEEEEeeecccceecchhhHHHHHhhccchhhhhccC
Q 003579 297 FDTT--DGDPRLLRFRSGHSAPPLCIRFYANGRHILSAGQDRAFRLFSVIQDQQSRELSQRHVAKRARKLKMKEEELKLK 374 (809)
Q Consensus 297 ~~~~--~~~~~~~~~~~~h~~~v~~i~~~~~~~~l~s~~~dg~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 374 (809)
+... ++..+..+.+.+|.+-+.|+.|.+|+ +|++++.|.+..+||++++++...+.
T Consensus 126 ls~~d~~g~~~v~r~l~gHtgylScC~f~dD~-~ilT~SGD~TCalWDie~g~~~~~f~--------------------- 183 (343)
T KOG0286|consen 126 LSTRDAEGNVRVSRELAGHTGYLSCCRFLDDN-HILTGSGDMTCALWDIETGQQTQVFH--------------------- 183 (343)
T ss_pred cccccccccceeeeeecCccceeEEEEEcCCC-ceEecCCCceEEEEEcccceEEEEec---------------------
Confidence 9876 55567778899999999999999855 79999999999999999887655542
Q ss_pred ceeEEeeccccccccceeEEeecCCceEEEEEeeeeeecceeeecCCCCCCCeEEEEEcC-CCCEEEEEeCCCcEEEEEC
Q 003579 375 PVIAFDCAEIRERDWCNVVTCHMDTAQAYVWRLQNFVLGEHILRPCPENPTAVKACTISA-CGNFAVLGTAGGWIERFNL 453 (809)
Q Consensus 375 ~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~v~~v~~s~-~g~~l~~g~~~g~i~i~~~ 453 (809)
+|.+.|.+++++| +++.+++|+.|+..++||+
T Consensus 184 -----------------------------------------------GH~gDV~slsl~p~~~ntFvSg~cD~~aklWD~ 216 (343)
T KOG0286|consen 184 -----------------------------------------------GHTGDVMSLSLSPSDGNTFVSGGCDKSAKLWDV 216 (343)
T ss_pred -----------------------------------------------CCcccEEEEecCCCCCCeEEecccccceeeeec
Confidence 5779999999999 9999999999999999999
Q ss_pred CCCceeeeeeCcccccccCccccEEEEEEcCCCCEEEEEeCcCeEEEEECCCCceeeeeecC---CCeEEEEEeeCCCEE
Q 003579 454 QSGISRGSYLDMSERSNYAHNGEVVGVACDSTNTLMISAGYHGDIKVWDFKGRDLKSRWEVG---CSLVKIVYHRVNGLL 530 (809)
Q Consensus 454 ~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~---~~i~~~~~s~~~~~l 530 (809)
+++...+.|. +|...|+++.|.|+|.-+++|+.|++.++||++..+.+..+.+. .+|++++||..|++|
T Consensus 217 R~~~c~qtF~--------ghesDINsv~ffP~G~afatGSDD~tcRlyDlRaD~~~a~ys~~~~~~gitSv~FS~SGRlL 288 (343)
T KOG0286|consen 217 RSGQCVQTFE--------GHESDINSVRFFPSGDAFATGSDDATCRLYDLRADQELAVYSHDSIICGITSVAFSKSGRLL 288 (343)
T ss_pred cCcceeEeec--------ccccccceEEEccCCCeeeecCCCceeEEEeecCCcEEeeeccCcccCCceeEEEcccccEE
Confidence 9999999997 99999999999999999999999999999999999999888765 799999999999999
Q ss_pred EEEeCCCeEEEEEcCCCeEEEEEecCCCCeeeEEECCCCCEEEEEeCCCeEEEEE
Q 003579 531 ATVADDLVIRLFDVVALRMVRKFEGHTDRITDFCFSEDGKWLLSSGMDGSLRIWD 585 (809)
Q Consensus 531 a~~~~d~~I~v~d~~~~~~~~~~~~h~~~I~~l~fspdg~~l~s~s~D~~I~vwd 585 (809)
.+|..|.++.+||.-.++.+..+.||.++|+++..+|||.-++|||.|.++|||.
T Consensus 289 fagy~d~~c~vWDtlk~e~vg~L~GHeNRvScl~~s~DG~av~TgSWDs~lriW~ 343 (343)
T KOG0286|consen 289 FAGYDDFTCNVWDTLKGERVGVLAGHENRVSCLGVSPDGMAVATGSWDSTLRIWA 343 (343)
T ss_pred EeeecCCceeEeeccccceEEEeeccCCeeEEEEECCCCcEEEecchhHheeecC
Confidence 9999999999999999999999999999999999999999999999999999994
No 18
>KOG1408 consensus WD40 repeat protein [Function unknown]
Probab=100.00 E-value=1.1e-38 Score=325.45 Aligned_cols=484 Identities=17% Similarity=0.251 Sum_probs=366.6
Q ss_pred cCCeEEEEEEcC--CeEEEEEcCccEEEEecCCCCCCcEEEEEeCCeEEEEE-CCe----EEEEECCeeEEE-Ecccccc
Q 003579 24 LGTENFVTVSVG--KAFHIYNCAKLNLVLVGPQLPKKIRALASYRDYTFAAY-GNH----IAVVKRAHQVAT-WSRHSAK 95 (809)
Q Consensus 24 ~~~~~~i~~~~~--~~i~iwd~~~~~~~~~~~~~~~~I~~la~~~~~~~~a~-g~~----i~vw~~~~~~~~-~~~h~~~ 95 (809)
+++++++++-.| .+++||++..-.++..+..|.-.++|+||+|.+.|+.+ |.+ |.||+-...+.. -..-...
T Consensus 88 ~~GryvatGEcG~~pa~kVw~la~h~vVAEfvdHKY~vtcvaFsp~~kyvvSVGsQHDMIVnv~dWr~N~~~asnkiss~ 167 (1080)
T KOG1408|consen 88 QNGRYVATGECGRTPASKVWSLAFHGVVAEFVDHKYNVTCVAFSPGNKYVVSVGSQHDMIVNVNDWRVNSSGASNKISSV 167 (1080)
T ss_pred CCCcEEEecccCCCccceeeeeccccchhhhhhccccceeeeecCCCcEEEeeccccceEEEhhhhhhccccccccccee
Confidence 677888877754 46999999999899999999999999999999999876 544 777764332222 3345667
Q ss_pred EEEEEE--eCCEEEEEeCCCcEEEEEcCCCcccccee---------eeEEc--------------CCccc----------
Q 003579 96 VNLLLL--FGEHILSIDIDGNMFIWAFKGIEENLAPV---------GHVKL--------------DDKFT---------- 140 (809)
Q Consensus 96 V~~l~~--~g~~l~s~~~dg~i~vWd~~~~~~~~~~~---------~~~~~--------------~~~~~---------- 140 (809)
|..++| +|.|+++++ ...|++|.++.+..+..++ ..+.. ...+.
T Consensus 168 Vsav~fsEdgSYfvT~g-nrHvk~wyl~~~~KykdpiPl~gRs~~lg~lr~n~f~avaCg~gicAestfait~qGhLvEF 246 (1080)
T KOG1408|consen 168 VSAVAFSEDGSYFVTSG-NRHVKLWYLQIQSKYKDPIPLPGRSYFLGNLRFNEFLAVACGVGICAESTFAITAQGHLVEF 246 (1080)
T ss_pred EEEEEEccCCceeeeee-eeeEEEEEeeccccccCCccccchhhhccccccchhhhhhhcCcccccceEEEecccceeee
Confidence 888888 799999998 8889999998876432111 00000 00000
Q ss_pred ----------------cEEEEeCCCCCCEEEEEeCCCeEEEEeCCCCceEEEEcC-C-----------------------
Q 003579 141 ----------------PTCIMHPDTYLNKVIVGSQEGSLQLWNISTKKKLYEFKG-W----------------------- 180 (809)
Q Consensus 141 ----------------~~~~~~p~~~~~~l~~~~~dg~i~lwd~~~~~~~~~~~~-~----------------------- 180 (809)
..|+ .-+. .+|++|+.+|.|+++|..+..-+.+++. |
T Consensus 247 SsRRLLDKWVqcRTTnAnCI-cVs~--r~I~cgCa~g~vrlFnp~tL~y~~Tlpr~halg~d~a~~~q~~~~~s~~~~a~ 323 (1080)
T KOG1408|consen 247 SSRRLLDKWVQCRTTNANCI-CVSS--RLIACGCAKGMVRLFNPETLDYAGTLPRSHALGSDTANLSQPEPKNSESSPAI 323 (1080)
T ss_pred chhhhhhhhhhhhcccccee-eeec--ceEEEeeccceeeecCcchhhhccccccccccccchhhcccccccccccCccc
Confidence 0111 1133 5799999999999999887654444321 1
Q ss_pred CCCEEEEEEcCCCCEEEEEeCCCeEEEEEeeCCeEEEE---EeccCCCcEEEEEEec------------CCCCEEEEEcC
Q 003579 181 GSSISSCVSSPALDVVAVGCSDGKIHVHNVRYDEELVT---FTHSMRGAVTALAFSS------------DGQPLLASGAS 245 (809)
Q Consensus 181 ~~~I~~l~~sp~~~~la~g~~dg~i~iwd~~~~~~~~~---~~~~~~~~V~~l~fs~------------dg~~~lasg~~ 245 (809)
--...++.|+|..+.|.+...|..++|||++.-+.+.. +.- |...|..+.--| .+ .+++++.
T Consensus 324 fPD~IA~~Fdet~~klscVYndhSlYvWDvrD~~kvgk~~s~ly-HS~ciW~Ve~~p~nv~~~~~aclp~~--cF~TCSs 400 (1080)
T KOG1408|consen 324 FPDAIACQFDETTDKLSCVYNDHSLYVWDVRDVNKVGKCSSMLY-HSACIWDVENLPCNVHSPTAACLPRG--CFTTCSS 400 (1080)
T ss_pred CCceeEEEecCCCceEEEEEcCceEEEEeccccccccceeeeee-ccceeeeeccccccccCcccccCCcc--ceeEecC
Confidence 01235678999999999999999999999986543322 222 255566665444 23 4889999
Q ss_pred CCcEEEEECCCceeeeeee------------------------------------cccccceEEEEEecCCCEEEEEcCC
Q 003579 246 SGVISIWNLEKRRLQSVIR------------------------------------EAHDNAIISLHFFANEPVLMSASAD 289 (809)
Q Consensus 246 dg~I~iwdl~~~~~~~~~~------------------------------------~~h~~~V~~l~~~~~~~~l~s~s~d 289 (809)
|++|++||++.+..-..++ .....++.+++.+|++++|++|..-
T Consensus 401 D~TIRlW~l~~ctnn~vyrRNils~~l~ki~y~d~~~q~~~d~~~~~fdka~~s~~d~r~G~R~~~vSp~gqhLAsGDr~ 480 (1080)
T KOG1408|consen 401 DGTIRLWDLAFCTNNQVYRRNILSANLSKIPYEDSTQQIMHDASAGIFDKALVSTCDSRFGFRALAVSPDGQHLASGDRG 480 (1080)
T ss_pred CCcEEEeecccccccceeecccchhhhhcCccccCchhhhhhccCCcccccchhhcCcccceEEEEECCCcceecccCcc
Confidence 9999999998631111100 0123578999999999999999999
Q ss_pred CcEEEEEeeCCCCCceeEEeccCCCCCCeeEEEec---CCCEEEEEECCCCEEEEEeeecccceecchhhHHHHHhhccc
Q 003579 290 NSIKMWIFDTTDGDPRLLRFRSGHSAPPLCIRFYA---NGRHILSAGQDRAFRLFSVIQDQQSRELSQRHVAKRARKLKM 366 (809)
Q Consensus 290 ~~i~vw~~~~~~~~~~~~~~~~~h~~~v~~i~~~~---~~~~l~s~~~dg~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~ 366 (809)
|.+++|++... +.+.....|...|.|+.|+. ..++|++++.|+-|.+||+...-
T Consensus 481 GnlrVy~Lq~l----~~~~~~eAHesEilcLeyS~p~~~~kLLASasrdRlIHV~Dv~rny------------------- 537 (1080)
T KOG1408|consen 481 GNLRVYDLQEL----EYTCFMEAHESEILCLEYSFPVLTNKLLASASRDRLIHVYDVKRNY------------------- 537 (1080)
T ss_pred CceEEEEehhh----hhhhheecccceeEEEeecCchhhhHhhhhccCCceEEEEeccccc-------------------
Confidence 99999988765 55667789999999999986 45789999999999999985431
Q ss_pred hhhhhccCceeEEeeccccccccceeEEeecCCceEEEEEeeeeeecceeeecCCCCCCCeEEEEEcCCC--CEEEEEeC
Q 003579 367 KEEELKLKPVIAFDCAEIRERDWCNVVTCHMDTAQAYVWRLQNFVLGEHILRPCPENPTAVKACTISACG--NFAVLGTA 444 (809)
Q Consensus 367 ~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~v~~v~~s~~g--~~l~~g~~ 444 (809)
..+....+|...|+++.|...| ..+++++.
T Consensus 538 ------------------------------------------------~l~qtld~HSssITsvKFa~~gln~~MiscGA 569 (1080)
T KOG1408|consen 538 ------------------------------------------------DLVQTLDGHSSSITSVKFACNGLNRKMISCGA 569 (1080)
T ss_pred ------------------------------------------------chhhhhcccccceeEEEEeecCCceEEEeccC
Confidence 1223445778999999998887 77888888
Q ss_pred CCcEEEEECCCCceeeeeeCcccccccCccccEEEEEEcCCCCEEEEEeCcCeEEEEECCCCceeeeeecC----CCeEE
Q 003579 445 GGWIERFNLQSGISRGSYLDMSERSNYAHNGEVVGVACDSTNTLMISAGYHGDIKVWDFKGRDLKSRWEVG----CSLVK 520 (809)
Q Consensus 445 ~g~i~i~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~----~~i~~ 520 (809)
|..|.+--.+.......+.... .......+..++++|..+++++++.|..|+|||+.+++..+.++.. +....
T Consensus 570 DksimFr~~qk~~~g~~f~r~t---~t~~ktTlYDm~Vdp~~k~v~t~cQDrnirif~i~sgKq~k~FKgs~~~eG~lIK 646 (1080)
T KOG1408|consen 570 DKSIMFRVNQKASSGRLFPRHT---QTLSKTTLYDMAVDPTSKLVVTVCQDRNIRIFDIESGKQVKSFKGSRDHEGDLIK 646 (1080)
T ss_pred chhhheehhccccCceeccccc---cccccceEEEeeeCCCcceEEEEecccceEEEeccccceeeeecccccCCCceEE
Confidence 8877655544333233332100 0122457899999999999999999999999999999999998754 67889
Q ss_pred EEEeeCCCEEEEEeCCCeEEEEEcCCCeEEEEEecCCCCeeeEEECCCCCEEEEEeCCCeEEEEEcCC
Q 003579 521 IVYHRVNGLLATVADDLVIRLFDVVALRMVRKFEGHTDRITDFCFSEDGKWLLSSGMDGSLRIWDVIL 588 (809)
Q Consensus 521 ~~~s~~~~~la~~~~d~~I~v~d~~~~~~~~~~~~h~~~I~~l~fspdg~~l~s~s~D~~I~vwd~~~ 588 (809)
+...|.|-|+|+.+.|.++.++|..+++++.+..||...|+.+.|++|.+.|++++.||.|.||.++.
T Consensus 647 v~lDPSgiY~atScsdktl~~~Df~sgEcvA~m~GHsE~VTG~kF~nDCkHlISvsgDgCIFvW~lp~ 714 (1080)
T KOG1408|consen 647 VILDPSGIYLATSCSDKTLCFVDFVSGECVAQMTGHSEAVTGVKFLNDCKHLISVSGDGCIFVWKLPL 714 (1080)
T ss_pred EEECCCccEEEEeecCCceEEEEeccchhhhhhcCcchheeeeeecccchhheeecCCceEEEEECch
Confidence 99999999999999999999999999999999999999999999999999999999999999999985
No 19
>KOG0276 consensus Vesicle coat complex COPI, beta' subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=100.00 E-value=1.1e-37 Score=314.41 Aligned_cols=472 Identities=16% Similarity=0.206 Sum_probs=339.3
Q ss_pred EccccccEEEEEE--eCCEEEEEeCCCcEEEEEcCCCccccceeeeEEcCCccccEEEEeCCCCCCEEEEEeCCCeEEEE
Q 003579 89 WSRHSAKVNLLLL--FGEHILSIDIDGNMFIWAFKGIEENLAPVGHVKLDDKFTPTCIMHPDTYLNKVIVGSQEGSLQLW 166 (809)
Q Consensus 89 ~~~h~~~V~~l~~--~g~~l~s~~~dg~i~vWd~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~l~~~~~dg~i~lw 166 (809)
+..|+.+|.++.+ -..|++++-..|.|.||+.++... ++.+......+.++.|-+.. +.+++|+.|..|++|
T Consensus 9 ~~~rSdRVKsVd~HPtePw~la~LynG~V~IWnyetqtm----VksfeV~~~PvRa~kfiaRk--nWiv~GsDD~~IrVf 82 (794)
T KOG0276|consen 9 FQSRSDRVKSVDFHPTEPWILAALYNGDVQIWNYETQTM----VKSFEVSEVPVRAAKFIARK--NWIVTGSDDMQIRVF 82 (794)
T ss_pred hhccCCceeeeecCCCCceEEEeeecCeeEEEeccccee----eeeeeecccchhhheeeecc--ceEEEecCCceEEEE
Confidence 5668999999986 478999999999999999999888 88899888889999998888 899999999999999
Q ss_pred eCCCCceEEEEcCCCCCEEEEEEcCCCCEEEEEeCCCeEEEEEeeCCe-EEEEEeccCCCcEEEEEEecCCCCEEEEEcC
Q 003579 167 NISTKKKLYEFKGWGSSISSCVSSPALDVVAVGCSDGKIHVHNVRYDE-ELVTFTHSMRGAVTALAFSSDGQPLLASGAS 245 (809)
Q Consensus 167 d~~~~~~~~~~~~~~~~I~~l~~sp~~~~la~g~~dg~i~iwd~~~~~-~~~~~~~~~~~~V~~l~fs~dg~~~lasg~~ 245 (809)
|..+++.++.|..|..-|.|++.+|...++++++.|-+|++||.+..- +.++|.+| ..-|.+++|.|.....+|+++-
T Consensus 83 nynt~ekV~~FeAH~DyIR~iavHPt~P~vLtsSDDm~iKlW~we~~wa~~qtfeGH-~HyVMqv~fnPkD~ntFaS~sL 161 (794)
T KOG0276|consen 83 NYNTGEKVKTFEAHSDYIRSIAVHPTLPYVLTSSDDMTIKLWDWENEWACEQTFEGH-EHYVMQVAFNPKDPNTFASASL 161 (794)
T ss_pred ecccceeeEEeeccccceeeeeecCCCCeEEecCCccEEEEeeccCceeeeeEEcCc-ceEEEEEEecCCCccceeeeec
Confidence 999999999999999999999999999999999999999999998664 55666654 8899999999988879999999
Q ss_pred CCcEEEEECCCceeeeeeecccccceEEEEEecCC--CEEEEEcCCCcEEEEEeeCCCCCceeEEeccCCCCCCeeEEEe
Q 003579 246 SGVISIWNLEKRRLQSVIREAHDNAIISLHFFANE--PVLMSASADNSIKMWIFDTTDGDPRLLRFRSGHSAPPLCIRFY 323 (809)
Q Consensus 246 dg~I~iwdl~~~~~~~~~~~~h~~~V~~l~~~~~~--~~l~s~s~d~~i~vw~~~~~~~~~~~~~~~~~h~~~v~~i~~~ 323 (809)
|++|++|.+.+..+..++. +|..+|+++.|.+.| ++|++|+.|.++++||+.+. .+++++.||...|..+.|+
T Consensus 162 DrTVKVWslgs~~~nfTl~-gHekGVN~Vdyy~~gdkpylIsgaDD~tiKvWDyQtk----~CV~TLeGHt~Nvs~v~fh 236 (794)
T KOG0276|consen 162 DRTVKVWSLGSPHPNFTLE-GHEKGVNCVDYYTGGDKPYLISGADDLTIKVWDYQTK----SCVQTLEGHTNNVSFVFFH 236 (794)
T ss_pred cccEEEEEcCCCCCceeee-ccccCcceEEeccCCCcceEEecCCCceEEEeecchH----HHHHHhhcccccceEEEec
Confidence 9999999999999999999 999999999999855 69999999999999999887 6888999999999999999
Q ss_pred cCCCEEEEEECCCCEEEEEeeecccceecchhhHHHHHhhccchhhhhccCceeEEeeccccccccceeEEeecCCceEE
Q 003579 324 ANGRHILSAGQDRAFRLFSVIQDQQSRELSQRHVAKRARKLKMKEEELKLKPVIAFDCAEIRERDWCNVVTCHMDTAQAY 403 (809)
Q Consensus 324 ~~~~~l~s~~~dg~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~ 403 (809)
|.-..+++|+.||++++|...+-+....+..+. ..+=++... ...+.++.+.+.+.+.
T Consensus 237 p~lpiiisgsEDGTvriWhs~Ty~lE~tLn~gl-----------------eRvW~I~~~-----k~~~~i~vG~Deg~i~ 294 (794)
T KOG0276|consen 237 PELPIIISGSEDGTVRIWNSKTYKLEKTLNYGL-----------------ERVWCIAAH-----KGDGKIAVGFDEGSVT 294 (794)
T ss_pred CCCcEEEEecCCccEEEecCcceehhhhhhcCC-----------------ceEEEEeec-----CCCCeEEEeccCCcEE
Confidence 999999999999999999987765554443210 000000000 0000111111111111
Q ss_pred EEEeeeeeecceeeecCCCCCCCeEEEEEcCCCCEEEEEeCCCcEEEEECCCCceeeeeeCccc-----ccccCccccEE
Q 003579 404 VWRLQNFVLGEHILRPCPENPTAVKACTISACGNFAVLGTAGGWIERFNLQSGISRGSYLDMSE-----RSNYAHNGEVV 478 (809)
Q Consensus 404 ~w~~~~~~~~~~~~~~~~~~~~~v~~v~~s~~g~~l~~g~~~g~i~i~~~~~~~~~~~~~~~~~-----~~~~~h~~~v~ 478 (809)
+ .. ......+.+++.|+.+.+.... |.--++.+-.......+... ..+-.-.-...
T Consensus 295 v-------------~l----greeP~vsMd~~gKIiwa~~~e--i~~~~~ks~~~~~ev~DgErL~LsvKeLgs~eiyPq 355 (794)
T KOG0276|consen 295 V-------------KL----GREEPAVSMDSNGKIIWAVHSE--IQAVNLKSVGAQKEVTDGERLPLSVKELGSVEIYPQ 355 (794)
T ss_pred E-------------Ec----cCCCCceeecCCccEEEEcCce--eeeeeceeccCcccccCCccccchhhhccccccchH
Confidence 0 00 0122334445555444433221 22222211111100000000 00001111234
Q ss_pred EEEEcCCCCEEEEEeCcCeEEEEECCCCceeeeeecCCCeEEEEEeeCCCEEEEEeCCCeEEEEEcCCCeEEEEEecCCC
Q 003579 479 GVACDSTNTLMISAGYHGDIKVWDFKGRDLKSRWEVGCSLVKIVYHRVNGLLATVADDLVIRLFDVVALRMVRKFEGHTD 558 (809)
Q Consensus 479 ~l~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~i~~~~~s~~~~~la~~~~d~~I~v~d~~~~~~~~~~~~h~~ 558 (809)
.++.+|+|+.++.|+ ||.-.||..-. .+-+.-+.-....|.+|.+..|+--.++.|.++ +..+..+.+...-.
T Consensus 356 ~L~hsPNGrfV~Vcg-dGEyiIyTala----~RnK~fG~~~eFvw~~dsne~avRes~~~vki~--knfke~ksi~~~~~ 428 (794)
T KOG0276|consen 356 TLAHSPNGRFVVVCG-DGEYIIYTALA----LRNKAFGSGLEFVWAADSNEFAVRESNGNVKIF--KNFKEHKSIRPDMS 428 (794)
T ss_pred HhccCCCCcEEEEec-CccEEEEEeee----hhhcccccceeEEEcCCCCeEEEEecCCceEEE--ecceeccccccccc
Confidence 567789998776665 57777775211 111222556778899998888888888999988 55665555542211
Q ss_pred CeeeEEECCCCCEEEEEeCCCeEEEEEcCCccEEEEeeeCcceEEEEEcCCCCeEEEEEeCCCeEEEee
Q 003579 559 RITDFCFSEDGKWLLSSGMDGSLRIWDVILARQIDAIHVDVSITALSLSPNMDVLATAHVDQNGVYLWV 627 (809)
Q Consensus 559 ~I~~l~fspdg~~l~s~s~D~~I~vwd~~~~~~i~~~~~~~~v~~l~~spdg~~lat~~~d~~~i~lW~ 627 (809)
..+--.|.+|...+ ++.+++||-.++++++.+... ...+.|+.+|.+++.++.++-.|.-++
T Consensus 429 ----~e~i~gg~Llg~~s-s~~~~fydW~~~~lVrrI~v~--~k~v~w~d~g~lVai~~d~Sfyil~~n 490 (794)
T KOG0276|consen 429 ----AEGIFGGPLLGVRS-SDFLCFYDWESGELVRRIEVT--SKHVYWSDNGELVAIAGDDSFYILKFN 490 (794)
T ss_pred ----eeeecCCceEEEEe-CCeEEEEEcccceEEEEEeec--cceeEEecCCCEEEEEecCceeEEEec
Confidence 11112344555555 566999999999999988653 458999999999999998873333333
No 20
>KOG0286 consensus G-protein beta subunit [General function prediction only]
Probab=100.00 E-value=3.7e-38 Score=290.33 Aligned_cols=290 Identities=18% Similarity=0.318 Sum_probs=262.2
Q ss_pred eeeEEcCCccccEEEEeCCCCCCEEEEEeCCCeEEEEeCCCCceEEEEcCCCCCEEEEEEcCCCCEEEEEeCCCeEEEEE
Q 003579 130 VGHVKLDDKFTPTCIMHPDTYLNKVIVGSQEGSLQLWNISTKKKLYEFKGWGSSISSCVSSPALDVVAVGCSDGKIHVHN 209 (809)
Q Consensus 130 ~~~~~~~~~~~~~~~~~p~~~~~~l~~~~~dg~i~lwd~~~~~~~~~~~~~~~~I~~l~~sp~~~~la~g~~dg~i~iwd 209 (809)
.++++.|..-+..+-|+++. ++|++++.||.+.|||.-+...++.++-....|..++|+|.|+++|.|+-|+...||+
T Consensus 48 rr~LkGH~~Ki~~~~ws~Ds--r~ivSaSqDGklIvWDs~TtnK~haipl~s~WVMtCA~sPSg~~VAcGGLdN~Csiy~ 125 (343)
T KOG0286|consen 48 RRTLKGHLNKIYAMDWSTDS--RRIVSASQDGKLIVWDSFTTNKVHAIPLPSSWVMTCAYSPSGNFVACGGLDNKCSIYP 125 (343)
T ss_pred EEEecccccceeeeEecCCc--CeEEeeccCCeEEEEEcccccceeEEecCceeEEEEEECCCCCeEEecCcCceeEEEe
Confidence 36677788888888899999 8999999999999999999999999998899999999999999999999999999999
Q ss_pred eeCC--e---EEEEEeccCCCcEEEEEEecCCCCEEEEEcCCCcEEEEECCCceeeeeeecccccceEEEEEec-CCCEE
Q 003579 210 VRYD--E---ELVTFTHSMRGAVTALAFSSDGQPLLASGASSGVISIWNLEKRRLQSVIREAHDNAIISLHFFA-NEPVL 283 (809)
Q Consensus 210 ~~~~--~---~~~~~~~~~~~~V~~l~fs~dg~~~lasg~~dg~I~iwdl~~~~~~~~~~~~h~~~V~~l~~~~-~~~~l 283 (809)
+.+. + .+.....+|.+.+.|+.|.+|+. |++++.|.+..+||+++++.+..+. +|.+.|.++.++| +++.+
T Consensus 126 ls~~d~~g~~~v~r~l~gHtgylScC~f~dD~~--ilT~SGD~TCalWDie~g~~~~~f~-GH~gDV~slsl~p~~~ntF 202 (343)
T KOG0286|consen 126 LSTRDAEGNVRVSRELAGHTGYLSCCRFLDDNH--ILTGSGDMTCALWDIETGQQTQVFH-GHTGDVMSLSLSPSDGNTF 202 (343)
T ss_pred cccccccccceeeeeecCccceeEEEEEcCCCc--eEecCCCceEEEEEcccceEEEEec-CCcccEEEEecCCCCCCeE
Confidence 9865 2 23333344589999999999875 8899999999999999999999999 9999999999999 89999
Q ss_pred EEEcCCCcEEEEEeeCCCCCceeEEeccCCCCCCeeEEEecCCCEEEEEECCCCEEEEEeeecccceecchhhHHHHHhh
Q 003579 284 MSASADNSIKMWIFDTTDGDPRLLRFRSGHSAPPLCIRFYANGRHILSAGQDRAFRLFSVIQDQQSRELSQRHVAKRARK 363 (809)
Q Consensus 284 ~s~s~d~~i~vw~~~~~~~~~~~~~~~~~h~~~v~~i~~~~~~~~l~s~~~dg~i~~wd~~~~~~~~~~~~~~~~~~~~~ 363 (809)
++|+-|++.++||++.+ ...+.+.||...|++++|.|+|.-+++|+.|++.++||++.+++...++..
T Consensus 203 vSg~cD~~aklWD~R~~----~c~qtF~ghesDINsv~ffP~G~afatGSDD~tcRlyDlRaD~~~a~ys~~-------- 270 (343)
T KOG0286|consen 203 VSGGCDKSAKLWDVRSG----QCVQTFEGHESDINSVRFFPSGDAFATGSDDATCRLYDLRADQELAVYSHD-------- 270 (343)
T ss_pred EecccccceeeeeccCc----ceeEeecccccccceEEEccCCCeeeecCCCceeEEEeecCCcEEeeeccC--------
Confidence 99999999999998876 688899999999999999999999999999999999999988766554321
Q ss_pred ccchhhhhccCceeEEeeccccccccceeEEeecCCceEEEEEeeeeeecceeeecCCCCCCCeEEEEEcCCCCEEEEEe
Q 003579 364 LKMKEEELKLKPVIAFDCAEIRERDWCNVVTCHMDTAQAYVWRLQNFVLGEHILRPCPENPTAVKACTISACGNFAVLGT 443 (809)
Q Consensus 364 ~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~v~~v~~s~~g~~l~~g~ 443 (809)
....+|++++||..|++|+.|+
T Consensus 271 ----------------------------------------------------------~~~~gitSv~FS~SGRlLfagy 292 (343)
T KOG0286|consen 271 ----------------------------------------------------------SIICGITSVAFSKSGRLLFAGY 292 (343)
T ss_pred ----------------------------------------------------------cccCCceeEEEcccccEEEeee
Confidence 1227899999999999999999
Q ss_pred CCCcEEEEECCCCceeeeeeCcccccccCccccEEEEEEcCCCCEEEEEeCcCeEEEEE
Q 003579 444 AGGWIERFNLQSGISRGSYLDMSERSNYAHNGEVVGVACDSTNTLMISAGYHGDIKVWD 502 (809)
Q Consensus 444 ~~g~i~i~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~l~s~~~dg~i~iwd 502 (809)
.|..+.+||.-.++....+. +|...|+++..+|||..+++++.|..++||.
T Consensus 293 ~d~~c~vWDtlk~e~vg~L~--------GHeNRvScl~~s~DG~av~TgSWDs~lriW~ 343 (343)
T KOG0286|consen 293 DDFTCNVWDTLKGERVGVLA--------GHENRVSCLGVSPDGMAVATGSWDSTLRIWA 343 (343)
T ss_pred cCCceeEeeccccceEEEee--------ccCCeeEEEEECCCCcEEEecchhHheeecC
Confidence 99999999999999998886 9999999999999999999999999999994
No 21
>KOG0273 consensus Beta-transducin family (WD-40 repeat) protein [Chromatin structure and dynamics]
Probab=100.00 E-value=7.2e-38 Score=306.35 Aligned_cols=326 Identities=23% Similarity=0.380 Sum_probs=278.8
Q ss_pred EcCCCCCEEEEEEcCCCC-EEEEEeCCCeEEEEEeeCCe----EEEEEe---------ccCCCcEEEEEEecCCCCEEEE
Q 003579 177 FKGWGSSISSCVSSPALD-VVAVGCSDGKIHVHNVRYDE----ELVTFT---------HSMRGAVTALAFSSDGQPLLAS 242 (809)
Q Consensus 177 ~~~~~~~I~~l~~sp~~~-~la~g~~dg~i~iwd~~~~~----~~~~~~---------~~~~~~V~~l~fs~dg~~~las 242 (809)
...|..+|.+++|+|-.+ .+++|+.|-..++|++.... ....++ ......|++++|+.+|. +||+
T Consensus 174 vl~~~~~V~~~~WnP~~~~llasg~~~s~ari~~l~e~~~~~~~q~~lrh~~~~~~~s~~~nkdVT~L~Wn~~G~-~Lat 252 (524)
T KOG0273|consen 174 VLRHESEVFICAWNPLRDGLLASGSGDSTARIWNLLENSNIGSTQLVLRHCIREGGKSVPSNKDVTSLDWNNDGT-LLAT 252 (524)
T ss_pred eccCCCceEEEecCchhhhhhhccCCccceeeeeehhhccccchhhhhhhhhhhhcccCCccCCcceEEecCCCC-eEEE
Confidence 334999999999999877 99999999999999997411 111111 11135799999999999 9999
Q ss_pred EcCCCcEEEEECCCceeeeeeecccccceEEEEEecCCCEEEEEcCCCcEEEEEeeCCCCCceeEEeccCCCCCCeeEEE
Q 003579 243 GASSGVISIWNLEKRRLQSVIREAHDNAIISLHFFANEPVLMSASADNSIKMWIFDTTDGDPRLLRFRSGHSAPPLCIRF 322 (809)
Q Consensus 243 g~~dg~I~iwdl~~~~~~~~~~~~h~~~V~~l~~~~~~~~l~s~s~d~~i~vw~~~~~~~~~~~~~~~~~h~~~v~~i~~ 322 (809)
|+.||.+++|+. .|.++.++. .|.++|.++.|+..|.+|++++.|+++.+||...+ .....+.-|..+-..+.|
T Consensus 253 G~~~G~~riw~~-~G~l~~tl~-~HkgPI~slKWnk~G~yilS~~vD~ttilwd~~~g----~~~q~f~~~s~~~lDVdW 326 (524)
T KOG0273|consen 253 GSEDGEARIWNK-DGNLISTLG-QHKGPIFSLKWNKKGTYILSGGVDGTTILWDAHTG----TVKQQFEFHSAPALDVDW 326 (524)
T ss_pred eecCcEEEEEec-Cchhhhhhh-ccCCceEEEEEcCCCCEEEeccCCccEEEEeccCc----eEEEeeeeccCCccceEE
Confidence 999999999996 566666776 79999999999999999999999999999987665 455666678888777888
Q ss_pred ecCCCEEEEEECCCCEEEEEeeecccceecchhhHHHHHhhccchhhhhccCceeEEeeccccccccceeEEeecCCceE
Q 003579 323 YANGRHILSAGQDRAFRLFSVIQDQQSRELSQRHVAKRARKLKMKEEELKLKPVIAFDCAEIRERDWCNVVTCHMDTAQA 402 (809)
Q Consensus 323 ~~~~~~l~s~~~dg~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~ 402 (809)
-.+. .+++++.|+.|+++.+....+.
T Consensus 327 ~~~~-~F~ts~td~~i~V~kv~~~~P~----------------------------------------------------- 352 (524)
T KOG0273|consen 327 QSND-EFATSSTDGCIHVCKVGEDRPV----------------------------------------------------- 352 (524)
T ss_pred ecCc-eEeecCCCceEEEEEecCCCcc-----------------------------------------------------
Confidence 7544 6788888888888876443222
Q ss_pred EEEEeeeeeecceeeecCCCCCCCeEEEEEcCCCCEEEEEeCCCcEEEEECCCCceeeeeeCcccccccCccccEEEEEE
Q 003579 403 YVWRLQNFVLGEHILRPCPENPTAVKACTISACGNFAVLGTAGGWIERFNLQSGISRGSYLDMSERSNYAHNGEVVGVAC 482 (809)
Q Consensus 403 ~~w~~~~~~~~~~~~~~~~~~~~~v~~v~~s~~g~~l~~g~~~g~i~i~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~ 482 (809)
.++ .+|.++|.++.|
T Consensus 353 ---------------------------------------------------------~t~--------~GH~g~V~alk~ 367 (524)
T KOG0273|consen 353 ---------------------------------------------------------KTF--------IGHHGEVNALKW 367 (524)
T ss_pred ---------------------------------------------------------eee--------ecccCceEEEEE
Confidence 222 289999999999
Q ss_pred cCCCCEEEEEeCcCeEEEEECCCCceeeeeecC-CCeEEEEEeeCC---------CEEEEEeCCCeEEEEEcCCCeEEEE
Q 003579 483 DSTNTLMISAGYHGDIKVWDFKGRDLKSRWEVG-CSLVKIVYHRVN---------GLLATVADDLVIRLFDVVALRMVRK 552 (809)
Q Consensus 483 ~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~-~~i~~~~~s~~~---------~~la~~~~d~~I~v~d~~~~~~~~~ 552 (809)
+|.+.+|++|+.|++++||+.........+..+ ..|..+.|+|.| ..+++++.|++|++||+..+.++..
T Consensus 368 n~tg~LLaS~SdD~TlkiWs~~~~~~~~~l~~Hskei~t~~wsp~g~v~~n~~~~~~l~sas~dstV~lwdv~~gv~i~~ 447 (524)
T KOG0273|consen 368 NPTGSLLASCSDDGTLKIWSMGQSNSVHDLQAHSKEIYTIKWSPTGPVTSNPNMNLMLASASFDSTVKLWDVESGVPIHT 447 (524)
T ss_pred CCCCceEEEecCCCeeEeeecCCCcchhhhhhhccceeeEeecCCCCccCCCcCCceEEEeecCCeEEEEEccCCceeEe
Confidence 999999999999999999999888888877666 689999999965 4899999999999999999999999
Q ss_pred EecCCCCeeeEEECCCCCEEEEEeCCCeEEEEEcCCccEEEEeeeCcceEEEEEcCCCCeEEEEEeCCCeEEEeecC
Q 003579 553 FEGHTDRITDFCFSEDGKWLLSSGMDGSLRIWDVILARQIDAIHVDVSITALSLSPNMDVLATAHVDQNGVYLWVNR 629 (809)
Q Consensus 553 ~~~h~~~I~~l~fspdg~~l~s~s~D~~I~vwd~~~~~~i~~~~~~~~v~~l~~spdg~~lat~~~d~~~i~lW~~~ 629 (809)
|..|..+|.+++|||+|+|+++|+.||.|.+|+.+++++.+.+.....|..++|+.+|++|..+-.|+ .+++-|++
T Consensus 448 f~kH~~pVysvafS~~g~ylAsGs~dg~V~iws~~~~~l~~s~~~~~~Ifel~Wn~~G~kl~~~~sd~-~vcvldlr 523 (524)
T KOG0273|consen 448 LMKHQEPVYSVAFSPNGRYLASGSLDGCVHIWSTKTGKLVKSYQGTGGIFELCWNAAGDKLGACASDG-SVCVLDLR 523 (524)
T ss_pred eccCCCceEEEEecCCCcEEEecCCCCeeEeccccchheeEeecCCCeEEEEEEcCCCCEEEEEecCC-CceEEEec
Confidence 99999999999999999999999999999999999999999999999999999999999999999998 58887765
No 22
>KOG0315 consensus G-protein beta subunit-like protein (contains WD40 repeats) [General function prediction only]
Probab=100.00 E-value=9.1e-38 Score=281.02 Aligned_cols=291 Identities=14% Similarity=0.318 Sum_probs=255.4
Q ss_pred CCEEEEEcCCCcEEEEECCCceeeeeeecccccceEEEEEecCCCEEEEEcCCCcEEEEEeeCCCCCceeEEeccCCCCC
Q 003579 237 QPLLASGASSGVISIWNLEKRRLQSVIREAHDNAIISLHFFANEPVLMSASADNSIKMWIFDTTDGDPRLLRFRSGHSAP 316 (809)
Q Consensus 237 ~~~lasg~~dg~I~iwdl~~~~~~~~~~~~h~~~V~~l~~~~~~~~l~s~s~d~~i~vw~~~~~~~~~~~~~~~~~h~~~ 316 (809)
.-+|++++.|.+|++|...+|.+..+++ ...+.|+.+...|+++.|++++. ..||+||+++.+. .++..+.+|...
T Consensus 10 ~viLvsA~YDhTIRfWqa~tG~C~rTiq-h~dsqVNrLeiTpdk~~LAaa~~-qhvRlyD~~S~np--~Pv~t~e~h~kN 85 (311)
T KOG0315|consen 10 PVILVSAGYDHTIRFWQALTGICSRTIQ-HPDSQVNRLEITPDKKDLAAAGN-QHVRLYDLNSNNP--NPVATFEGHTKN 85 (311)
T ss_pred ceEEEeccCcceeeeeehhcCeEEEEEe-cCccceeeEEEcCCcchhhhccC-CeeEEEEccCCCC--CceeEEeccCCc
Confidence 3489999999999999999999999998 55788999999999999998875 5799999887654 468888999999
Q ss_pred CeeEEEecCCCEEEEEECCCCEEEEEeeecccceecchhhHHHHHhhccchhhhhccCceeEEeeccccccccceeEEee
Q 003579 317 PLCIRFYANGRHILSAGQDRAFRLFSVIQDQQSRELSQRHVAKRARKLKMKEEELKLKPVIAFDCAEIRERDWCNVVTCH 396 (809)
Q Consensus 317 v~~i~~~~~~~~l~s~~~dg~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~ 396 (809)
|+.+.|..+|+++++||+||++++||++.....+.+
T Consensus 86 VtaVgF~~dgrWMyTgseDgt~kIWdlR~~~~qR~~-------------------------------------------- 121 (311)
T KOG0315|consen 86 VTAVGFQCDGRWMYTGSEDGTVKIWDLRSLSCQRNY-------------------------------------------- 121 (311)
T ss_pred eEEEEEeecCeEEEecCCCceEEEEeccCcccchhc--------------------------------------------
Confidence 999999999999999999999999999875544433
Q ss_pred cCCceEEEEEeeeeeecceeeecCCCCCCCeEEEEEcCCCCEEEEEeCCCcEEEEECCCCceeeeeeCcccccccCcccc
Q 003579 397 MDTAQAYVWRLQNFVLGEHILRPCPENPTAVKACTISACGNFAVLGTAGGWIERFNLQSGISRGSYLDMSERSNYAHNGE 476 (809)
Q Consensus 397 ~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~v~~v~~s~~g~~l~~g~~~g~i~i~~~~~~~~~~~~~~~~~~~~~~h~~~ 476 (809)
.+..+|+++.+.|+...|++|..+|.|++||+........+. +.....
T Consensus 122 -------------------------~~~spVn~vvlhpnQteLis~dqsg~irvWDl~~~~c~~~li-------Pe~~~~ 169 (311)
T KOG0315|consen 122 -------------------------QHNSPVNTVVLHPNQTELISGDQSGNIRVWDLGENSCTHELI-------PEDDTS 169 (311)
T ss_pred -------------------------cCCCCcceEEecCCcceEEeecCCCcEEEEEccCCccccccC-------CCCCcc
Confidence 234899999999999999999999999999999887776664 355678
Q ss_pred EEEEEEcCCCCEEEEEeCcCeEEEEECCCCce------eeeeecC-CCeEEEEEeeCCCEEEEEeCCCeEEEEEcCCC-e
Q 003579 477 VVGVACDSTNTLMISAGYHGDIKVWDFKGRDL------KSRWEVG-CSLVKIVYHRVNGLLATVADDLVIRLFDVVAL-R 548 (809)
Q Consensus 477 v~~l~~~~~~~~l~s~~~dg~i~iwd~~~~~~------~~~~~~~-~~i~~~~~s~~~~~la~~~~d~~I~v~d~~~~-~ 548 (809)
|.++++.|+|.+++.+...|..++|++-+.+. +..++.+ ..+..+.+|||+++||+++.|.+++||+.++. +
T Consensus 170 i~sl~v~~dgsml~a~nnkG~cyvW~l~~~~~~s~l~P~~k~~ah~~~il~C~lSPd~k~lat~ssdktv~iwn~~~~~k 249 (311)
T KOG0315|consen 170 IQSLTVMPDGSMLAAANNKGNCYVWRLLNHQTASELEPVHKFQAHNGHILRCLLSPDVKYLATCSSDKTVKIWNTDDFFK 249 (311)
T ss_pred eeeEEEcCCCcEEEEecCCccEEEEEccCCCccccceEhhheecccceEEEEEECCCCcEEEeecCCceEEEEecCCcee
Confidence 99999999999999999999999999876543 3344433 78999999999999999999999999999988 7
Q ss_pred EEEEEecCCCCeeeEEECCCCCEEEEEeCCCeEEEEEcCCccEEEEeeeCc-ceEEEEEc
Q 003579 549 MVRKFEGHTDRITDFCFSEDGKWLLSSGMDGSLRIWDVILARQIDAIHVDV-SITALSLS 607 (809)
Q Consensus 549 ~~~~~~~h~~~I~~l~fspdg~~l~s~s~D~~I~vwd~~~~~~i~~~~~~~-~v~~l~~s 607 (809)
....+.+|...+.+.+||.||+||+||+.|+++|+||+..++.+..+.+|. +..+++..
T Consensus 250 le~~l~gh~rWvWdc~FS~dg~YlvTassd~~~rlW~~~~~k~v~qy~gh~K~~vc~~ln 309 (311)
T KOG0315|consen 250 LELVLTGHQRWVWDCAFSADGEYLVTASSDHTARLWDLSAGKEVRQYQGHHKAAVCVALN 309 (311)
T ss_pred eEEEeecCCceEEeeeeccCccEEEecCCCCceeecccccCceeeecCCcccccEEEEee
Confidence 788899999999999999999999999999999999999999999987654 46666653
No 23
>KOG0279 consensus G protein beta subunit-like protein [Signal transduction mechanisms]
Probab=100.00 E-value=4.4e-37 Score=281.64 Aligned_cols=298 Identities=17% Similarity=0.271 Sum_probs=254.1
Q ss_pred EEccccccEEEEEE---eCCEEEEEeCCCcEEEEEcCCCcc-ccceeeeEEcCCccccEEEEeCCCCCCEEEEEeCCCeE
Q 003579 88 TWSRHSAKVNLLLL---FGEHILSIDIDGNMFIWAFKGIEE-NLAPVGHVKLDDKFTPTCIMHPDTYLNKVIVGSQEGSL 163 (809)
Q Consensus 88 ~~~~h~~~V~~l~~---~g~~l~s~~~dg~i~vWd~~~~~~-~~~~~~~~~~~~~~~~~~~~~p~~~~~~l~~~~~dg~i 163 (809)
.+++|.+.|+.++. +.+.|++++.|.++.+|++..... ...+++.+..|..++..+++++++ ++.++++.|+++
T Consensus 10 tl~gh~d~Vt~la~~~~~~~~l~sasrDk~ii~W~L~~dd~~~G~~~r~~~GHsH~v~dv~~s~dg--~~alS~swD~~l 87 (315)
T KOG0279|consen 10 TLEGHTDWVTALAIKIKNSDILVSASRDKTIIVWKLTSDDIKYGVPVRRLTGHSHFVSDVVLSSDG--NFALSASWDGTL 87 (315)
T ss_pred eecCCCceEEEEEeecCCCceEEEcccceEEEEEEeccCccccCceeeeeeccceEecceEEccCC--ceEEeccccceE
Confidence 48999999999996 468899999999999999987643 234578899999999999999999 999999999999
Q ss_pred EEEeCCCCceEEEEcCCCCCEEEEEEcCCCCEEEEEeCCCeEEEEEeeCCeEEEEEeccC-CCcEEEEEEecCC-CCEEE
Q 003579 164 QLWNISTKKKLYEFKGWGSSISSCVSSPALDVVAVGCSDGKIHVHNVRYDEELVTFTHSM-RGAVTALAFSSDG-QPLLA 241 (809)
Q Consensus 164 ~lwd~~~~~~~~~~~~~~~~I~~l~~sp~~~~la~g~~dg~i~iwd~~~~~~~~~~~~~~-~~~V~~l~fs~dg-~~~la 241 (809)
++||+.+|+..+.|.+|...|.+++|+||.+.+++|+.|.+|.+||.. +.+..++..+. .+.|+|+.|+|+. +++++
T Consensus 88 rlWDl~~g~~t~~f~GH~~dVlsva~s~dn~qivSGSrDkTiklwnt~-g~ck~t~~~~~~~~WVscvrfsP~~~~p~Iv 166 (315)
T KOG0279|consen 88 RLWDLATGESTRRFVGHTKDVLSVAFSTDNRQIVSGSRDKTIKLWNTL-GVCKYTIHEDSHREWVSCVRFSPNESNPIIV 166 (315)
T ss_pred EEEEecCCcEEEEEEecCCceEEEEecCCCceeecCCCcceeeeeeec-ccEEEEEecCCCcCcEEEEEEcCCCCCcEEE
Confidence 999999999999999999999999999999999999999999999987 45555555443 7899999999985 56999
Q ss_pred EEcCCCcEEEEECCCceeeeeeecccccceEEEEEecCCCEEEEEcCCCcEEEEEeeCCCCCceeEEeccCCCCCCeeEE
Q 003579 242 SGASSGVISIWNLEKRRLQSVIREAHDNAIISLHFFANEPVLMSASADNSIKMWIFDTTDGDPRLLRFRSGHSAPPLCIR 321 (809)
Q Consensus 242 sg~~dg~I~iwdl~~~~~~~~~~~~h~~~V~~l~~~~~~~~l~s~s~d~~i~vw~~~~~~~~~~~~~~~~~h~~~v~~i~ 321 (809)
+++.|++|++||+++.++...+. +|.+.++.++++|||.++++|+.||.+.+||++... .+..+ +|...|.+++
T Consensus 167 s~s~DktvKvWnl~~~~l~~~~~-gh~~~v~t~~vSpDGslcasGgkdg~~~LwdL~~~k----~lysl-~a~~~v~sl~ 240 (315)
T KOG0279|consen 167 SASWDKTVKVWNLRNCQLRTTFI-GHSGYVNTVTVSPDGSLCASGGKDGEAMLWDLNEGK----NLYSL-EAFDIVNSLC 240 (315)
T ss_pred EccCCceEEEEccCCcchhhccc-cccccEEEEEECCCCCEEecCCCCceEEEEEccCCc----eeEec-cCCCeEeeEE
Confidence 99999999999999999998888 999999999999999999999999999999998773 44444 7889999999
Q ss_pred EecCCCEEEEEECCCCEEEEEeeecccceecchhhHHHHHhhccchhhhhccCceeEEeeccccccccceeEEeecCCce
Q 003579 322 FYANGRHILSAGQDRAFRLFSVIQDQQSRELSQRHVAKRARKLKMKEEELKLKPVIAFDCAEIRERDWCNVVTCHMDTAQ 401 (809)
Q Consensus 322 ~~~~~~~l~s~~~dg~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~ 401 (809)
|+|+.-.|+.+ .+.+|++||+.+.....++.......
T Consensus 241 fspnrywL~~a-t~~sIkIwdl~~~~~v~~l~~d~~g~------------------------------------------ 277 (315)
T KOG0279|consen 241 FSPNRYWLCAA-TATSIKIWDLESKAVVEELKLDGIGP------------------------------------------ 277 (315)
T ss_pred ecCCceeEeec-cCCceEEEeccchhhhhhcccccccc------------------------------------------
Confidence 99987555544 45569999999887776664321100
Q ss_pred EEEEEeeeeeecceeeecCCCCCCCeEEEEEcCCCCEEEEEeCCCcEEEEECC
Q 003579 402 AYVWRLQNFVLGEHILRPCPENPTAVKACTISACGNFAVLGTAGGWIERFNLQ 454 (809)
Q Consensus 402 ~~~w~~~~~~~~~~~~~~~~~~~~~v~~v~~s~~g~~l~~g~~~g~i~i~~~~ 454 (809)
..........+++|+++|..|+.|..++.|++|.+.
T Consensus 278 -----------------s~~~~~~~clslaws~dG~tLf~g~td~~irv~qv~ 313 (315)
T KOG0279|consen 278 -----------------SSKAGDPICLSLAWSADGQTLFAGYTDNVIRVWQVA 313 (315)
T ss_pred -----------------ccccCCcEEEEEEEcCCCcEEEeeecCCcEEEEEee
Confidence 000112456788999999999999999999999864
No 24
>KOG2106 consensus Uncharacterized conserved protein, contains HELP and WD40 domains [Function unknown]
Probab=100.00 E-value=6.7e-35 Score=287.43 Aligned_cols=507 Identities=16% Similarity=0.189 Sum_probs=379.6
Q ss_pred EEEEcCCeEEEEEEcCCeEEEEEcCccEEEEecCCCCCCcEEEEEeCCeEEEEECCe-----------EEEEECCee--E
Q 003579 20 SVQRLGTENFVTVSVGKAFHIYNCAKLNLVLVGPQLPKKIRALASYRDYTFAAYGNH-----------IAVVKRAHQ--V 86 (809)
Q Consensus 20 ~~~~~~~~~~i~~~~~~~i~iwd~~~~~~~~~~~~~~~~I~~la~~~~~~~~a~g~~-----------i~vw~~~~~--~ 86 (809)
.+...+...++ +-......+|+.+...+.+. .+|...|.||+++|+...+|+|.. +++||.-+. +
T Consensus 70 Nly~lptgE~v-yfvA~V~Vl~n~ee~~Qr~y-~GH~ddikc~~vHPdri~vatGQ~ag~~g~~~~phvriWdsv~L~TL 147 (626)
T KOG2106|consen 70 NLYLLPTGELV-YFVAAVGVLYNWEERSQRHY-LGHNDDIKCMAVHPDRIRVATGQGAGTSGRPLQPHVRIWDSVTLSTL 147 (626)
T ss_pred eeEEccCccEE-EEeccEEEEEeehhhhcccc-cCCCCceEEEeecCCceeeccCcccccCCCcCCCeeeecccccceee
Confidence 33333433333 33345677888877444333 368999999999999999997642 899996543 4
Q ss_pred EEEccccccEEEEEEe----CCEEEEEeC--CCcEEEEEcCCCccccceeeeEEcCCccccEEEEeCCCCCCEEEEEeCC
Q 003579 87 ATWSRHSAKVNLLLLF----GEHILSIDI--DGNMFIWAFKGIEENLAPVGHVKLDDKFTPTCIMHPDTYLNKVIVGSQE 160 (809)
Q Consensus 87 ~~~~~h~~~V~~l~~~----g~~l~s~~~--dg~i~vWd~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~l~~~~~d 160 (809)
+.+..-...|++++|. |.+|+..+. +..+.|||.+.+.. ....+.....+..+.|||... |.+++. ..
T Consensus 148 ~V~g~f~~GV~~vaFsk~~~G~~l~~vD~s~~h~lSVWdWqk~~~----~~~vk~sne~v~~a~FHPtd~-nliit~-Gk 221 (626)
T KOG2106|consen 148 HVIGFFDRGVTCVAFSKINGGSLLCAVDDSNPHMLSVWDWQKKAK----LGPVKTSNEVVFLATFHPTDP-NLIITC-GK 221 (626)
T ss_pred eeeccccccceeeeecccCCCceEEEecCCCccccchhhchhhhc----cCcceeccceEEEEEeccCCC-cEEEEe-CC
Confidence 4466677789999983 777777654 34599999998877 555566677778888999884 455554 56
Q ss_pred CeEEEEeCCCCceEEE---EcCC-CCCEEEEEEcCCCCEEEEEeCCCeEEEEEeeCCeEEEEEeccCCCcEEEEEEecCC
Q 003579 161 GSLQLWNISTKKKLYE---FKGW-GSSISSCVSSPALDVVAVGCSDGKIHVHNVRYDEELVTFTHSMRGAVTALAFSSDG 236 (809)
Q Consensus 161 g~i~lwd~~~~~~~~~---~~~~-~~~I~~l~~sp~~~~la~g~~dg~i~iwd~~~~~~~~~~~~~~~~~V~~l~fs~dg 236 (809)
|.+.+|+.+++.+... |+.+ ..-|.|++|.++|+ +++|.++|.|.||+..+.+..++.. .|.+.|.+++...+|
T Consensus 222 ~H~~Fw~~~~~~l~k~~~~fek~ekk~Vl~v~F~engd-viTgDS~G~i~Iw~~~~~~~~k~~~-aH~ggv~~L~~lr~G 299 (626)
T KOG2106|consen 222 GHLYFWTLRGGSLVKRQGIFEKREKKFVLCVTFLENGD-VITGDSGGNILIWSKGTNRISKQVH-AHDGGVFSLCMLRDG 299 (626)
T ss_pred ceEEEEEccCCceEEEeeccccccceEEEEEEEcCCCC-EEeecCCceEEEEeCCCceEEeEee-ecCCceEEEEEecCc
Confidence 8899999998876554 4333 46799999999987 6799999999999998888877777 558999999999999
Q ss_pred CCEEEEEcCCCcEEEEECCCceeeeeee-cccccceEEEEEecCCCEEEEEcCCCcEEEEEeeCCCCCceeEEeccCCCC
Q 003579 237 QPLLASGASSGVISIWNLEKRRLQSVIR-EAHDNAIISLHFFANEPVLMSASADNSIKMWIFDTTDGDPRLLRFRSGHSA 315 (809)
Q Consensus 237 ~~~lasg~~dg~I~iwdl~~~~~~~~~~-~~h~~~V~~l~~~~~~~~l~s~s~d~~i~vw~~~~~~~~~~~~~~~~~h~~ 315 (809)
. |++|+.|..|..||- .-+.++... ....++|+.++-... -|+.|...+.|-.=.++.. ......+|..
T Consensus 300 t--llSGgKDRki~~Wd~-~y~k~r~~elPe~~G~iRtv~e~~~--di~vGTtrN~iL~Gt~~~~-----f~~~v~gh~d 369 (626)
T KOG2106|consen 300 T--LLSGGKDRKIILWDD-NYRKLRETELPEQFGPIRTVAEGKG--DILVGTTRNFILQGTLENG-----FTLTVQGHGD 369 (626)
T ss_pred c--EeecCccceEEeccc-cccccccccCchhcCCeeEEecCCC--cEEEeeccceEEEeeecCC-----ceEEEEeccc
Confidence 7 566999999999993 322222222 234567777764333 3666766666655444433 2333458999
Q ss_pred CCeeEEEecCCCEEEEEECCCCEEEEEeeecccceecchhhHHHHHhhccchhhhhccCceeEEeeccccccccceeEEe
Q 003579 316 PPLCIRFYANGRHILSAGQDRAFRLFSVIQDQQSRELSQRHVAKRARKLKMKEEELKLKPVIAFDCAEIRERDWCNVVTC 395 (809)
Q Consensus 316 ~v~~i~~~~~~~~l~s~~~dg~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~ 395 (809)
....++.+|+...+++++.|+.+++|+ ..+..
T Consensus 370 elwgla~hps~~q~~T~gqdk~v~lW~--~~k~~---------------------------------------------- 401 (626)
T KOG2106|consen 370 ELWGLATHPSKNQLLTCGQDKHVRLWN--DHKLE---------------------------------------------- 401 (626)
T ss_pred ceeeEEcCCChhheeeccCcceEEEcc--CCcee----------------------------------------------
Confidence 999999999999999999999999998 11111
Q ss_pred ecCCceEEEEEeeeeeecceeeecCCCCCCCeEEEEEcCCCCEEEEEeCCCcEEEEECCCCceeeeeeCcccccccCccc
Q 003579 396 HMDTAQAYVWRLQNFVLGEHILRPCPENPTAVKACTISACGNFAVLGTAGGWIERFNLQSGISRGSYLDMSERSNYAHNG 475 (809)
Q Consensus 396 ~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~v~~v~~s~~g~~l~~g~~~g~i~i~~~~~~~~~~~~~~~~~~~~~~h~~ 475 (809)
|+. ....++.|+.|.|.| .+++|+..|...+.|..+...+..-. . +.
T Consensus 402 ---------wt~--------------~~~d~~~~~~fhpsg-~va~Gt~~G~w~V~d~e~~~lv~~~~--------d-~~ 448 (626)
T KOG2106|consen 402 ---------WTK--------------IIEDPAECADFHPSG-VVAVGTATGRWFVLDTETQDLVTIHT--------D-NE 448 (626)
T ss_pred ---------EEE--------------EecCceeEeeccCcc-eEEEeeccceEEEEecccceeEEEEe--------c-CC
Confidence 110 012788999999999 99999999999999999966655443 3 78
Q ss_pred cEEEEEEcCCCCEEEEEeCcCeEEEEECCCCceeeee--e-cCCCeEEEEEeeCCCEEEEEeCCCeEEEEEcCCCeEEEE
Q 003579 476 EVVGVACDSTNTLMISAGYHGDIKVWDFKGRDLKSRW--E-VGCSLVKIVYHRVNGLLATVADDLVIRLFDVVALRMVRK 552 (809)
Q Consensus 476 ~v~~l~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~--~-~~~~i~~~~~s~~~~~la~~~~d~~I~v~d~~~~~~~~~ 552 (809)
+++.+.++|+|.++|.|+.|+.|++|.+......... . ..++|+.+.|++|++++.+.+.|-.|..|.....+.+..
T Consensus 449 ~ls~v~ysp~G~~lAvgs~d~~iyiy~Vs~~g~~y~r~~k~~gs~ithLDwS~Ds~~~~~~S~d~eiLyW~~~~~~~~ts 528 (626)
T KOG2106|consen 449 QLSVVRYSPDGAFLAVGSHDNHIYIYRVSANGRKYSRVGKCSGSPITHLDWSSDSQFLVSNSGDYEILYWKPSECKQITS 528 (626)
T ss_pred ceEEEEEcCCCCEEEEecCCCeEEEEEECCCCcEEEEeeeecCceeEEeeecCCCceEEeccCceEEEEEccccCcccce
Confidence 9999999999999999999999999998755433222 1 228999999999999999999999999994432221111
Q ss_pred --------------E----ecCCCCeeeEEECCCCCEEEEEeCCCeEEEEEcCCccEEEE---eeeCcc-eEEEEEcCCC
Q 003579 553 --------------F----EGHTDRITDFCFSEDGKWLLSSGMDGSLRIWDVILARQIDA---IHVDVS-ITALSLSPNM 610 (809)
Q Consensus 553 --------------~----~~h~~~I~~l~fspdg~~l~s~s~D~~I~vwd~~~~~~i~~---~~~~~~-v~~l~~spdg 610 (809)
| ..|...|+.++-+.+.+.+++|...|.|++|..+-.+.... +..|+. |++++|+-+.
T Consensus 529 ~kDvkW~t~~c~lGF~v~g~s~~t~i~a~~rs~~~~~lA~gdd~g~v~lf~yPc~s~rA~~he~~ghs~~vt~V~Fl~~d 608 (626)
T KOG2106|consen 529 VKDVKWATYTCTLGFEVFGGSDGTDINAVARSHCEKLLASGDDFGKVHLFSYPCSSPRAPSHEYGGHSSHVTNVAFLCKD 608 (626)
T ss_pred ecceeeeeeEEEEEEEEecccCCchHHHhhhhhhhhhhhccccCceEEEEccccCCCcccceeeccccceeEEEEEeeCC
Confidence 1 13556788888899999999999999999999886554433 334544 9999999998
Q ss_pred CeEEEEEeCCCeEEEeec
Q 003579 611 DVLATAHVDQNGVYLWVN 628 (809)
Q Consensus 611 ~~lat~~~d~~~i~lW~~ 628 (809)
..|.+.+.|. +|..|++
T Consensus 609 ~~li~tg~D~-Si~qW~l 625 (626)
T KOG2106|consen 609 SHLISTGKDT-SIMQWRL 625 (626)
T ss_pred ceEEecCCCc-eEEEEEe
Confidence 9999988777 7999985
No 25
>KOG0315 consensus G-protein beta subunit-like protein (contains WD40 repeats) [General function prediction only]
Probab=100.00 E-value=5.1e-37 Score=276.18 Aligned_cols=295 Identities=17% Similarity=0.259 Sum_probs=254.7
Q ss_pred CEEEEEeCCCeEEEEEeeCCeEEEEEeccCCCcEEEEEEecCCCCEEEEEcCCCcEEEEECCCce--eeeeeecccccce
Q 003579 194 DVVAVGCSDGKIHVHNVRYDEELVTFTHSMRGAVTALAFSSDGQPLLASGASSGVISIWNLEKRR--LQSVIREAHDNAI 271 (809)
Q Consensus 194 ~~la~g~~dg~i~iwd~~~~~~~~~~~~~~~~~V~~l~fs~dg~~~lasg~~dg~I~iwdl~~~~--~~~~~~~~h~~~V 271 (809)
-+|++++.|.+|++|...+|.+..++.+. .+.|..+...||++ .||+++ ...|++||++++. .+.++. +|...|
T Consensus 11 viLvsA~YDhTIRfWqa~tG~C~rTiqh~-dsqVNrLeiTpdk~-~LAaa~-~qhvRlyD~~S~np~Pv~t~e-~h~kNV 86 (311)
T KOG0315|consen 11 VILVSAGYDHTIRFWQALTGICSRTIQHP-DSQVNRLEITPDKK-DLAAAG-NQHVRLYDLNSNNPNPVATFE-GHTKNV 86 (311)
T ss_pred eEEEeccCcceeeeeehhcCeEEEEEecC-ccceeeEEEcCCcc-hhhhcc-CCeeEEEEccCCCCCceeEEe-ccCCce
Confidence 47899999999999999999999999876 88999999999999 777777 4689999999885 577777 999999
Q ss_pred EEEEEecCCCEEEEEcCCCcEEEEEeeCCCCCceeEEeccCCCCCCeeEEEecCCCEEEEEECCCCEEEEEeeeccccee
Q 003579 272 ISLHFFANEPVLMSASADNSIKMWIFDTTDGDPRLLRFRSGHSAPPLCIRFYANGRHILSAGQDRAFRLFSVIQDQQSRE 351 (809)
Q Consensus 272 ~~l~~~~~~~~l~s~s~d~~i~vw~~~~~~~~~~~~~~~~~h~~~v~~i~~~~~~~~l~s~~~dg~i~~wd~~~~~~~~~ 351 (809)
.++.|..+|+.+++||.||++||||++... +.+. ..|..+|+++..+|+...|++|.++|.|++||+.......+
T Consensus 87 taVgF~~dgrWMyTgseDgt~kIWdlR~~~----~qR~-~~~~spVn~vvlhpnQteLis~dqsg~irvWDl~~~~c~~~ 161 (311)
T KOG0315|consen 87 TAVGFQCDGRWMYTGSEDGTVKIWDLRSLS----CQRN-YQHNSPVNTVVLHPNQTELISGDQSGNIRVWDLGENSCTHE 161 (311)
T ss_pred EEEEEeecCeEEEecCCCceEEEEeccCcc----cchh-ccCCCCcceEEecCCcceEEeecCCCcEEEEEccCCccccc
Confidence 999999999999999999999999998742 2232 36779999999999999999999999999999987765554
Q ss_pred cchhhHHHHHhhccchhhhhccCceeEEeeccccccccceeEEeecCCceEEEEEeeeeeecceeeecCCCCCCCeEEEE
Q 003579 352 LSQRHVAKRARKLKMKEEELKLKPVIAFDCAEIRERDWCNVVTCHMDTAQAYVWRLQNFVLGEHILRPCPENPTAVKACT 431 (809)
Q Consensus 352 ~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~v~~v~ 431 (809)
+.. +....+.+++
T Consensus 162 liP-------------------------------------------------------------------e~~~~i~sl~ 174 (311)
T KOG0315|consen 162 LIP-------------------------------------------------------------------EDDTSIQSLT 174 (311)
T ss_pred cCC-------------------------------------------------------------------CCCcceeeEE
Confidence 322 2237899999
Q ss_pred EcCCCCEEEEEeCCCcEEEEECCCCceeeeeeCcccccccCccccEEEEEEcCCCCEEEEEeCcCeEEEEECCCC-ceee
Q 003579 432 ISACGNFAVLGTAGGWIERFNLQSGISRGSYLDMSERSNYAHNGEVVGVACDSTNTLMISAGYHGDIKVWDFKGR-DLKS 510 (809)
Q Consensus 432 ~s~~g~~l~~g~~~g~i~i~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~l~s~~~dg~i~iwd~~~~-~~~~ 510 (809)
+.|||.+++.+...|..++|++-.......+... ....+|++.+....++|++++|++++.|.+++||+.++. +...
T Consensus 175 v~~dgsml~a~nnkG~cyvW~l~~~~~~s~l~P~--~k~~ah~~~il~C~lSPd~k~lat~ssdktv~iwn~~~~~kle~ 252 (311)
T KOG0315|consen 175 VMPDGSMLAAANNKGNCYVWRLLNHQTASELEPV--HKFQAHNGHILRCLLSPDVKYLATCSSDKTVKIWNTDDFFKLEL 252 (311)
T ss_pred EcCCCcEEEEecCCccEEEEEccCCCccccceEh--hheecccceEEEEEECCCCcEEEeecCCceEEEEecCCceeeEE
Confidence 9999999999999999999999886554444322 224589999999999999999999999999999999987 4444
Q ss_pred eeecC-CCeEEEEEeeCCCEEEEEeCCCeEEEEEcCCCeEEEEEecCCCCeeeEEEC
Q 003579 511 RWEVG-CSLVKIVYHRVNGLLATVADDLVIRLFDVVALRMVRKFEGHTDRITDFCFS 566 (809)
Q Consensus 511 ~~~~~-~~i~~~~~s~~~~~la~~~~d~~I~v~d~~~~~~~~~~~~h~~~I~~l~fs 566 (809)
.++.+ ..+..++||.||.||++|+.|+.+++||+..++.++...||.....+++..
T Consensus 253 ~l~gh~rWvWdc~FS~dg~YlvTassd~~~rlW~~~~~k~v~qy~gh~K~~vc~~ln 309 (311)
T KOG0315|consen 253 VLTGHQRWVWDCAFSADGEYLVTASSDHTARLWDLSAGKEVRQYQGHHKAAVCVALN 309 (311)
T ss_pred EeecCCceEEeeeeccCccEEEecCCCCceeecccccCceeeecCCcccccEEEEee
Confidence 55544 689999999999999999999999999999999999999999888887764
No 26
>KOG0279 consensus G protein beta subunit-like protein [Signal transduction mechanisms]
Probab=100.00 E-value=9.1e-37 Score=279.60 Aligned_cols=291 Identities=20% Similarity=0.329 Sum_probs=248.3
Q ss_pred ceEEEEcCCCCCEEEEEEcCC-CCEEEEEeCCCeEEEEEee-----CCeEEEEEeccCCCcEEEEEEecCCCCEEEEEcC
Q 003579 172 KKLYEFKGWGSSISSCVSSPA-LDVVAVGCSDGKIHVHNVR-----YDEELVTFTHSMRGAVTALAFSSDGQPLLASGAS 245 (809)
Q Consensus 172 ~~~~~~~~~~~~I~~l~~sp~-~~~la~g~~dg~i~iwd~~-----~~~~~~~~~~~~~~~V~~l~fs~dg~~~lasg~~ 245 (809)
.+.-++++|.+.|+.++..+. .+.+.+++.|..+.+|++. .|..++.+.+| ...|..+..++||+ ++++++.
T Consensus 6 ~l~~tl~gh~d~Vt~la~~~~~~~~l~sasrDk~ii~W~L~~dd~~~G~~~r~~~GH-sH~v~dv~~s~dg~-~alS~sw 83 (315)
T KOG0279|consen 6 VLRGTLEGHTDWVTALAIKIKNSDILVSASRDKTIIVWKLTSDDIKYGVPVRRLTGH-SHFVSDVVLSSDGN-FALSASW 83 (315)
T ss_pred eeeeeecCCCceEEEEEeecCCCceEEEcccceEEEEEEeccCccccCceeeeeecc-ceEecceEEccCCc-eEEeccc
Confidence 345678999999999999886 5789999999999999986 45677888874 88999999999999 8999999
Q ss_pred CCcEEEEECCCceeeeeeecccccceEEEEEecCCCEEEEEcCCCcEEEEEeeCCCCCceeEEeccCCCCCCeeEEEecC
Q 003579 246 SGVISIWNLEKRRLQSVIREAHDNAIISLHFFANEPVLMSASADNSIKMWIFDTTDGDPRLLRFRSGHSAPPLCIRFYAN 325 (809)
Q Consensus 246 dg~I~iwdl~~~~~~~~~~~~h~~~V~~l~~~~~~~~l~s~s~d~~i~vw~~~~~~~~~~~~~~~~~h~~~v~~i~~~~~ 325 (809)
|+.+++||+.+++....+. +|...|.+++|++|.+.+++|+.|++|++|+.-.. ........+|.+.|.|++|+|+
T Consensus 84 D~~lrlWDl~~g~~t~~f~-GH~~dVlsva~s~dn~qivSGSrDkTiklwnt~g~---ck~t~~~~~~~~WVscvrfsP~ 159 (315)
T KOG0279|consen 84 DGTLRLWDLATGESTRRFV-GHTKDVLSVAFSTDNRQIVSGSRDKTIKLWNTLGV---CKYTIHEDSHREWVSCVRFSPN 159 (315)
T ss_pred cceEEEEEecCCcEEEEEE-ecCCceEEEEecCCCceeecCCCcceeeeeeeccc---EEEEEecCCCcCcEEEEEEcCC
Confidence 9999999999999988888 99999999999999999999999999999976543 1223333344889999999996
Q ss_pred --CCEEEEEECCCCEEEEEeeecccceecchhhHHHHHhhccchhhhhccCceeEEeeccccccccceeEEeecCCceEE
Q 003579 326 --GRHILSAGQDRAFRLFSVIQDQQSRELSQRHVAKRARKLKMKEEELKLKPVIAFDCAEIRERDWCNVVTCHMDTAQAY 403 (809)
Q Consensus 326 --~~~l~s~~~dg~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~ 403 (809)
..+|++++.|+++++||+++.+.
T Consensus 160 ~~~p~Ivs~s~DktvKvWnl~~~~l------------------------------------------------------- 184 (315)
T KOG0279|consen 160 ESNPIIVSASWDKTVKVWNLRNCQL------------------------------------------------------- 184 (315)
T ss_pred CCCcEEEEccCCceEEEEccCCcch-------------------------------------------------------
Confidence 77899999999999998765422
Q ss_pred EEEeeeeeecceeeecCCCCCCCeEEEEEcCCCCEEEEEeCCCcEEEEECCCCceeeeeeCcccccccCccccEEEEEEc
Q 003579 404 VWRLQNFVLGEHILRPCPENPTAVKACTISACGNFAVLGTAGGWIERFNLQSGISRGSYLDMSERSNYAHNGEVVGVACD 483 (809)
Q Consensus 404 ~w~~~~~~~~~~~~~~~~~~~~~v~~v~~s~~g~~l~~g~~~g~i~i~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~ 483 (809)
...+ .+|.+.++.++++
T Consensus 185 -------------------------------------------------------~~~~--------~gh~~~v~t~~vS 201 (315)
T KOG0279|consen 185 -------------------------------------------------------RTTF--------IGHSGYVNTVTVS 201 (315)
T ss_pred -------------------------------------------------------hhcc--------ccccccEEEEEEC
Confidence 1112 3899999999999
Q ss_pred CCCCEEEEEeCcCeEEEEECCCCceeeeeecCCCeEEEEEeeCCCEEEEEeCCCeEEEEEcCCCeEEEEEec----C---
Q 003579 484 STNTLMISAGYHGDIKVWDFKGRDLKSRWEVGCSLVKIVYHRVNGLLATVADDLVIRLFDVVALRMVRKFEG----H--- 556 (809)
Q Consensus 484 ~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~i~~~~~s~~~~~la~~~~d~~I~v~d~~~~~~~~~~~~----h--- 556 (809)
|||.++++|+.||.+.+||++.++.+..+.+...|.+++|+|+.-.|+.+ .+..|+|||++++.++..+.- .
T Consensus 202 pDGslcasGgkdg~~~LwdL~~~k~lysl~a~~~v~sl~fspnrywL~~a-t~~sIkIwdl~~~~~v~~l~~d~~g~s~~ 280 (315)
T KOG0279|consen 202 PDGSLCASGGKDGEAMLWDLNEGKNLYSLEAFDIVNSLCFSPNRYWLCAA-TATSIKIWDLESKAVVEELKLDGIGPSSK 280 (315)
T ss_pred CCCCEEecCCCCceEEEEEccCCceeEeccCCCeEeeEEecCCceeEeec-cCCceEEEeccchhhhhhccccccccccc
Confidence 99999999999999999999999999999999999999999976655555 456699999999988776652 2
Q ss_pred --CCCeeeEEECCCCCEEEEEeCCCeEEEEEcC
Q 003579 557 --TDRITDFCFSEDGKWLLSSGMDGSLRIWDVI 587 (809)
Q Consensus 557 --~~~I~~l~fspdg~~l~s~s~D~~I~vwd~~ 587 (809)
.-...+++||+||..|++|-.|+.|++|.+.
T Consensus 281 ~~~~~clslaws~dG~tLf~g~td~~irv~qv~ 313 (315)
T KOG0279|consen 281 AGDPICLSLAWSADGQTLFAGYTDNVIRVWQVA 313 (315)
T ss_pred cCCcEEEEEEEcCCCcEEEeeecCCcEEEEEee
Confidence 2235678999999999999999999999875
No 27
>KOG1063 consensus RNA polymerase II elongator complex, subunit ELP2, WD repeat superfamily [Chromatin structure and dynamics; Transcription]
Probab=100.00 E-value=8.6e-36 Score=304.89 Aligned_cols=496 Identities=19% Similarity=0.275 Sum_probs=359.8
Q ss_pred CcEEEEEeCCeEEEEECCe--EEEEECCee-E-EEEccccccEEEEEE--eCC---EEEEEeCCCcEEEEEcCCCccccc
Q 003579 58 KIRALASYRDYTFAAYGNH--IAVVKRAHQ-V-ATWSRHSAKVNLLLL--FGE---HILSIDIDGNMFIWAFKGIEENLA 128 (809)
Q Consensus 58 ~I~~la~~~~~~~~a~g~~--i~vw~~~~~-~-~~~~~h~~~V~~l~~--~g~---~l~s~~~dg~i~vWd~~~~~~~~~ 128 (809)
++.+++-..-+..+|+|.. |.+||..+. + ..+.||.++|+|+.+ ..+ ++++|+.||.|++|.+..... .
T Consensus 15 R~~~v~sw~~~~~vafGa~~~Iav~dp~k~~i~t~l~GH~a~VnC~~~l~~s~~~a~~vsG~sD~~v~lW~l~~~~~--~ 92 (764)
T KOG1063|consen 15 RVPKVSSWGPGGLVAFGAGPAIAVADPEKILIVTTLDGHVARVNCVHWLPTSEIVAEMVSGDSDGRVILWKLRDEYL--I 92 (764)
T ss_pred cccccccccccceEEecCCceEEEeCcccceeEEeccCCccceEEEEEcccccccceEEEccCCCcEEEEEEeehhe--E
Confidence 4555544444555666554 999998776 3 339999999999997 333 899999999999999983332 2
Q ss_pred eeeeEEcCCccccEEEEeCCCCCCEEEEEeCCCeEEEEeCCCCc--eEEEEcCCCCC--EEEEEEcCCCC--EEEEEeCC
Q 003579 129 PVGHVKLDDKFTPTCIMHPDTYLNKVIVGSQEGSLQLWNISTKK--KLYEFKGWGSS--ISSCVSSPALD--VVAVGCSD 202 (809)
Q Consensus 129 ~~~~~~~~~~~~~~~~~~p~~~~~~l~~~~~dg~i~lwd~~~~~--~~~~~~~~~~~--I~~l~~sp~~~--~la~g~~d 202 (809)
.+.+++++.. ...+++... ..+.+.+.++.+.+||.+..+ +...+.-..+. -.|+++.|+.+ ++|.|+.+
T Consensus 93 ~i~~~~g~~~--~~~cv~a~~--~~~~~~~ad~~v~vw~~~~~e~~~~~~~rf~~k~~ipLcL~~~~~~~~~lla~Ggs~ 168 (764)
T KOG1063|consen 93 KIYTIQGHCK--ECVCVVARS--SVMTCKAADGTVSVWDKQQDEVFLLAVLRFEIKEAIPLCLAALKNNKTFLLACGGSK 168 (764)
T ss_pred EEEeecCcce--eEEEEEeee--eEEEeeccCceEEEeecCCCceeeehheehhhhhHhhHHHhhhccCCcEEEEecCcc
Confidence 3444544222 233333322 223333689999999986555 23333222222 24556666332 56677778
Q ss_pred CeEEEEEeeCC--eEEEEEeccCCCcEEEEEEecCC--CCEEEEEcCCCcEEEEECCCce--------------------
Q 003579 203 GKIHVHNVRYD--EELVTFTHSMRGAVTALAFSSDG--QPLLASGASSGVISIWNLEKRR-------------------- 258 (809)
Q Consensus 203 g~i~iwd~~~~--~~~~~~~~~~~~~V~~l~fs~dg--~~~lasg~~dg~I~iwdl~~~~-------------------- 258 (809)
..|.++.-..+ +.+..+.+| .+.|.+++|...+ ..+||+++.|..|+||.+.-+.
T Consensus 169 ~~v~~~s~~~d~f~~v~el~GH-~DWIrsl~f~~~~~~~~~laS~SQD~yIRiW~i~~~~~~~~~~~e~~~t~~~~~~~f 247 (764)
T KOG1063|consen 169 FVVDLYSSSADSFARVAELEGH-TDWIRSLAFARLGGDDLLLASSSQDRYIRIWRIVLGDDEDSNEREDSLTTLSNLPVF 247 (764)
T ss_pred eEEEEeccCCcceeEEEEeecc-chhhhhhhhhccCCCcEEEEecCCceEEEEEEEEecCCccccccccccccccCCcee
Confidence 88888876644 345566665 8999999998654 4688999999999999764322
Q ss_pred -ee---e------eeecccccceEEEEEecCCCEEEEEcCCCcEEEEEeeCCCCCceeEEec---cCCCCCCeeEEEecC
Q 003579 259 -LQ---S------VIREAHDNAIISLHFFANEPVLMSASADNSIKMWIFDTTDGDPRLLRFR---SGHSAPPLCIRFYAN 325 (809)
Q Consensus 259 -~~---~------~~~~~h~~~V~~l~~~~~~~~l~s~s~d~~i~vw~~~~~~~~~~~~~~~---~~h~~~v~~i~~~~~ 325 (809)
.. . .+..+|.+.|.++.|.|.+..|++++.|+++.+|.-+..++.+.....+ .|.........|+|+
T Consensus 248 ~~l~~i~~~is~eall~GHeDWV~sv~W~p~~~~LLSASaDksmiiW~pd~~tGiWv~~vRlGe~gg~a~GF~g~lw~~n 327 (764)
T KOG1063|consen 248 MILEEIQYRISFEALLMGHEDWVYSVWWHPEGLDLLSASADKSMIIWKPDENTGIWVDVVRLGEVGGSAGGFWGGLWSPN 327 (764)
T ss_pred eeeeeEEEEEehhhhhcCcccceEEEEEccchhhheecccCcceEEEecCCccceEEEEEEeecccccccceeeEEEcCC
Confidence 01 0 1114899999999999999999999999999999887776665443322 344556889999999
Q ss_pred CCEEEEEECCCCEEEEEeeecccceecchhhHHHHHhhccchhhhhccCceeEEeeccccccccceeEEeecCCceEEEE
Q 003579 326 GRHILSAGQDRAFRLFSVIQDQQSRELSQRHVAKRARKLKMKEEELKLKPVIAFDCAEIRERDWCNVVTCHMDTAQAYVW 405 (809)
Q Consensus 326 ~~~l~s~~~dg~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~w 405 (809)
+..+++-+.-|..++|....... |
T Consensus 328 ~~~ii~~g~~Gg~hlWkt~d~~~--------------------------------------------------------w 351 (764)
T KOG1063|consen 328 SNVIIAHGRTGGFHLWKTKDKTF--------------------------------------------------------W 351 (764)
T ss_pred CCEEEEecccCcEEEEeccCccc--------------------------------------------------------e
Confidence 99999999999999998322111 1
Q ss_pred EeeeeeecceeeecCCCCCCCeEEEEEcCCCCEEEEEeCCCcEEEEECCCCceeeeeeCcccccccCccccEEEEEEcCC
Q 003579 406 RLQNFVLGEHILRPCPENPTAVKACTISACGNFAVLGTAGGWIERFNLQSGISRGSYLDMSERSNYAHNGEVVGVACDST 485 (809)
Q Consensus 406 ~~~~~~~~~~~~~~~~~~~~~v~~v~~s~~g~~l~~g~~~g~i~i~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~ 485 (809)
.......+|...|+.++|+|.|.|+++.+.|-+-++|-.- |.... ... .....-|...++|+++-+.
T Consensus 352 ---------~~~~~iSGH~~~V~dv~W~psGeflLsvs~DQTTRlFa~w-g~q~~-wHE--iaRPQiHGyDl~c~~~vn~ 418 (764)
T KOG1063|consen 352 ---------TQEPVISGHVDGVKDVDWDPSGEFLLSVSLDQTTRLFARW-GRQQE-WHE--IARPQIHGYDLTCLSFVNE 418 (764)
T ss_pred ---------eeccccccccccceeeeecCCCCEEEEeccccceeeeccc-ccccc-eee--ecccccccccceeeehccC
Confidence 1122334778999999999999999999999999998765 22111 110 0112478889999999886
Q ss_pred CCEEEEEeCcCeEEEEECCCC--------------------------------c--------------------------
Q 003579 486 NTLMISAGYHGDIKVWDFKGR--------------------------------D-------------------------- 507 (809)
Q Consensus 486 ~~~l~s~~~dg~i~iwd~~~~--------------------------------~-------------------------- 507 (809)
.-.+++|.....+|+|+.... +
T Consensus 419 ~~~FVSgAdEKVlRvF~aPk~fv~~l~~i~g~~~~~~~~~p~gA~VpaLGLSnKa~~~~e~~~G~~~~~~~et~~~~~p~ 498 (764)
T KOG1063|consen 419 DLQFVSGADEKVLRVFEAPKSFVKSLMAICGKCFKGSDELPDGANVPALGLSNKAFFPGETNTGGEAAVCAETPLAAAPC 498 (764)
T ss_pred CceeeecccceeeeeecCcHHHHHHHHHHhCccccCchhcccccccccccccCCCCcccccccccccceeeecccccCch
Confidence 777889999999999975321 0
Q ss_pred -------------------eeeeeecCCCeEEEEEeeCCCEEEEEeCC-----CeEEEEEcCCCeEEEEEecCCCCeeeE
Q 003579 508 -------------------LKSRWEVGCSLVKIVYHRVNGLLATVADD-----LVIRLFDVVALRMVRKFEGHTDRITDF 563 (809)
Q Consensus 508 -------------------~~~~~~~~~~i~~~~~s~~~~~la~~~~d-----~~I~v~d~~~~~~~~~~~~h~~~I~~l 563 (809)
..+.+.+...|.+++.+|+++++|+++.. ..|++|+..+...+..+.+|.-.|+.|
T Consensus 499 ~L~ePP~EdqLq~~tLwPEv~KLYGHGyEv~~l~~s~~gnliASaCKS~~~ehAvI~lw~t~~W~~~~~L~~HsLTVT~l 578 (764)
T KOG1063|consen 499 ELTEPPTEDQLQQNTLWPEVHKLYGHGYEVYALAISPTGNLIASACKSSLKEHAVIRLWNTANWLQVQELEGHSLTVTRL 578 (764)
T ss_pred hccCCChHHHHHHhccchhhHHhccCceeEEEEEecCCCCEEeehhhhCCccceEEEEEeccchhhhheecccceEEEEE
Confidence 00111134679999999999999999874 479999999999999999999999999
Q ss_pred EECCCCCEEEEEeCCCeEEEEEcCCccE----EEEeeeCcc-eEEEEEcCCCCeEEEEEeCCCeEEEeecCc
Q 003579 564 CFSEDGKWLLSSGMDGSLRIWDVILARQ----IDAIHVDVS-ITALSLSPNMDVLATAHVDQNGVYLWVNRC 630 (809)
Q Consensus 564 ~fspdg~~l~s~s~D~~I~vwd~~~~~~----i~~~~~~~~-v~~l~~spdg~~lat~~~d~~~i~lW~~~~ 630 (809)
+|||||++|+++|.|+++.+|....+.. .+..+.|.. |.+..|+|++.++||++.|. .|.+|....
T Consensus 579 ~FSpdg~~LLsvsRDRt~sl~~~~~~~~~e~~fa~~k~HtRIIWdcsW~pde~~FaTaSRDK-~VkVW~~~~ 649 (764)
T KOG1063|consen 579 AFSPDGRYLLSVSRDRTVSLYEVQEDIKDEFRFACLKAHTRIIWDCSWSPDEKYFATASRDK-KVKVWEEPD 649 (764)
T ss_pred EECCCCcEEEEeecCceEEeeeeecccchhhhhccccccceEEEEcccCcccceeEEecCCc-eEEEEeccC
Confidence 9999999999999999999998854322 223445555 99999999999999999999 699998753
No 28
>KOG0273 consensus Beta-transducin family (WD-40 repeat) protein [Chromatin structure and dynamics]
Probab=100.00 E-value=6.6e-36 Score=292.62 Aligned_cols=341 Identities=16% Similarity=0.244 Sum_probs=287.3
Q ss_pred eEEEEccccccEEEEEEe---CCEEEEEeCCCcEEEEEcCCCccccce---eee-E------EcCCccccEEEEeCCCCC
Q 003579 85 QVATWSRHSAKVNLLLLF---GEHILSIDIDGNMFIWAFKGIEENLAP---VGH-V------KLDDKFTPTCIMHPDTYL 151 (809)
Q Consensus 85 ~~~~~~~h~~~V~~l~~~---g~~l~s~~~dg~i~vWd~~~~~~~~~~---~~~-~------~~~~~~~~~~~~~p~~~~ 151 (809)
......+|+.+|.+.+|. ...|++++.|.+.++|++....-.... ++. + ......+.++.|+.++
T Consensus 170 ~~~kvl~~~~~V~~~~WnP~~~~llasg~~~s~ari~~l~e~~~~~~~q~~lrh~~~~~~~s~~~nkdVT~L~Wn~~G-- 247 (524)
T KOG0273|consen 170 SKAKVLRHESEVFICAWNPLRDGLLASGSGDSTARIWNLLENSNIGSTQLVLRHCIREGGKSVPSNKDVTSLDWNNDG-- 247 (524)
T ss_pred cceeeccCCCceEEEecCchhhhhhhccCCccceeeeeehhhccccchhhhhhhhhhhhcccCCccCCcceEEecCCC--
Confidence 344444599999999984 347899999999999999751110000 000 0 1123456678899999
Q ss_pred CEEEEEeCCCeEEEEeCCCCceEEEEcCCCCCEEEEEEcCCCCEEEEEeCCCeEEEEEeeCCeEEEEEeccCCCcEEEEE
Q 003579 152 NKVIVGSQEGSLQLWNISTKKKLYEFKGWGSSISSCVSSPALDVVAVGCSDGKIHVHNVRYDEELVTFTHSMRGAVTALA 231 (809)
Q Consensus 152 ~~l~~~~~dg~i~lwd~~~~~~~~~~~~~~~~I~~l~~sp~~~~la~g~~dg~i~iwd~~~~~~~~~~~~~~~~~V~~l~ 231 (809)
+.|++|+.+|.+++|+. +|.++.++..|.++|.++.|+..|.+|++++.||++.+||..+++....+..+ ..+-..+.
T Consensus 248 ~~LatG~~~G~~riw~~-~G~l~~tl~~HkgPI~slKWnk~G~yilS~~vD~ttilwd~~~g~~~q~f~~~-s~~~lDVd 325 (524)
T KOG0273|consen 248 TLLATGSEDGEARIWNK-DGNLISTLGQHKGPIFSLKWNKKGTYILSGGVDGTTILWDAHTGTVKQQFEFH-SAPALDVD 325 (524)
T ss_pred CeEEEeecCcEEEEEec-CchhhhhhhccCCceEEEEEcCCCCEEEeccCCccEEEEeccCceEEEeeeec-cCCccceE
Confidence 88999999999999995 88999999999999999999999999999999999999999999999998876 56667889
Q ss_pred EecCCCCEEEEEcCCCcEEEEECCCceeeeeeecccccceEEEEEecCCCEEEEEcCCCcEEEEEeeCCCCCceeEEecc
Q 003579 232 FSSDGQPLLASGASSGVISIWNLEKRRLQSVIREAHDNAIISLHFFANEPVLMSASADNSIKMWIFDTTDGDPRLLRFRS 311 (809)
Q Consensus 232 fs~dg~~~lasg~~dg~I~iwdl~~~~~~~~~~~~h~~~V~~l~~~~~~~~l~s~s~d~~i~vw~~~~~~~~~~~~~~~~ 311 (809)
|..+.. +++++.||.|+++.+...+++.++. +|.+.|.++.|.|.+.+|++++.|+++++|..... .....+.
T Consensus 326 W~~~~~--F~ts~td~~i~V~kv~~~~P~~t~~-GH~g~V~alk~n~tg~LLaS~SdD~TlkiWs~~~~----~~~~~l~ 398 (524)
T KOG0273|consen 326 WQSNDE--FATSSTDGCIHVCKVGEDRPVKTFI-GHHGEVNALKWNPTGSLLASCSDDGTLKIWSMGQS----NSVHDLQ 398 (524)
T ss_pred EecCce--EeecCCCceEEEEEecCCCcceeee-cccCceEEEEECCCCceEEEecCCCeeEeeecCCC----cchhhhh
Confidence 988775 8899999999999999999999999 79999999999999999999999999999976544 4566778
Q ss_pred CCCCCCeeEEEecCCCEEEEEECCCCEEEEEeeecccceecchhhHHHHHhhccchhhhhccCceeEEeeccccccccce
Q 003579 312 GHSAPPLCIRFYANGRHILSAGQDRAFRLFSVIQDQQSRELSQRHVAKRARKLKMKEEELKLKPVIAFDCAEIRERDWCN 391 (809)
Q Consensus 312 ~h~~~v~~i~~~~~~~~l~s~~~dg~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~ 391 (809)
+|...|..+.|+|+|.. ....
T Consensus 399 ~Hskei~t~~wsp~g~v-~~n~---------------------------------------------------------- 419 (524)
T KOG0273|consen 399 AHSKEIYTIKWSPTGPV-TSNP---------------------------------------------------------- 419 (524)
T ss_pred hhccceeeEeecCCCCc-cCCC----------------------------------------------------------
Confidence 99999999999997631 0000
Q ss_pred eEEeecCCceEEEEEeeeeeecceeeecCCCCCCCeEEEEEcCCCCEEEEEeCCCcEEEEECCCCceeeeeeCccccccc
Q 003579 392 VVTCHMDTAQAYVWRLQNFVLGEHILRPCPENPTAVKACTISACGNFAVLGTAGGWIERFNLQSGISRGSYLDMSERSNY 471 (809)
Q Consensus 392 ~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~v~~v~~s~~g~~l~~g~~~g~i~i~~~~~~~~~~~~~~~~~~~~~ 471 (809)
..+..++.++.|++|++||+..|..+..+.
T Consensus 420 ------------------------------------------~~~~~l~sas~dstV~lwdv~~gv~i~~f~-------- 449 (524)
T KOG0273|consen 420 ------------------------------------------NMNLMLASASFDSTVKLWDVESGVPIHTLM-------- 449 (524)
T ss_pred ------------------------------------------cCCceEEEeecCCeEEEEEccCCceeEeec--------
Confidence 023455666677777788888887777775
Q ss_pred CccccEEEEEEcCCCCEEEEEeCcCeEEEEECCCCceeeeeecCCCeEEEEEeeCCCEEEEEeCCCeEEEEEcC
Q 003579 472 AHNGEVVGVACDSTNTLMISAGYHGDIKVWDFKGRDLKSRWEVGCSLVKIVYHRVNGLLATVADDLVIRLFDVV 545 (809)
Q Consensus 472 ~h~~~v~~l~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~i~~~~~s~~~~~la~~~~d~~I~v~d~~ 545 (809)
.|..+|.+++|+|+++++++|+.||.|.+|+.+++++.+.+...+.|..++|+.+|.+|.++..|+.+++.|++
T Consensus 450 kH~~pVysvafS~~g~ylAsGs~dg~V~iws~~~~~l~~s~~~~~~Ifel~Wn~~G~kl~~~~sd~~vcvldlr 523 (524)
T KOG0273|consen 450 KHQEPVYSVAFSPNGRYLASGSLDGCVHIWSTKTGKLVKSYQGTGGIFELCWNAAGDKLGACASDGSVCVLDLR 523 (524)
T ss_pred cCCCceEEEEecCCCcEEEecCCCCeeEeccccchheeEeecCCCeEEEEEEcCCCCEEEEEecCCCceEEEec
Confidence 89999999999999999999999999999999999999999999999999999999999999999999999875
No 29
>KOG1539 consensus WD repeat protein [General function prediction only]
Probab=100.00 E-value=1.4e-33 Score=294.57 Aligned_cols=541 Identities=16% Similarity=0.218 Sum_probs=399.6
Q ss_pred eeeeEecCCcceEEEE-cCCeEEEEEEcCCeEEEEEcCccEEEEecCCCCCCcEEEEEeCCeEEEEE-CCeEEEEECCee
Q 003579 8 KAIGYITSSVPFSVQR-LGTENFVTVSVGKAFHIYNCAKLNLVLVGPQLPKKIRALASYRDYTFAAY-GNHIAVVKRAHQ 85 (809)
Q Consensus 8 r~~g~vs~~v~~~~~~-~~~~~~i~~~~~~~i~iwd~~~~~~~~~~~~~~~~I~~la~~~~~~~~a~-g~~i~vw~~~~~ 85 (809)
+.|+. +...|-.+.. .....++.+..++.|.+|--.+ ........|...|.-+..-.+...+.. .+.+.||+....
T Consensus 67 ~ll~v-s~~lp~~I~alas~~~~vy~A~g~~i~~~~rgk-~i~~~~~~~~a~v~~l~~fGe~lia~d~~~~l~vw~~s~~ 144 (910)
T KOG1539|consen 67 NLLFV-SKPLPDKITALASDKDYVYVASGNKIYAYARGK-HIRHTTLLHGAKVHLLLPFGEHLIAVDISNILFVWKTSSI 144 (910)
T ss_pred EEEEe-cCCCCCceEEEEecCceEEEecCcEEEEEEccc-eEEEEeccccceEEEEeeecceEEEEEccCcEEEEEeccc
Confidence 34443 5555544433 2344555566678888875332 445555567789998887777766655 444999986441
Q ss_pred -E--E---E-EccccccEEEEE-E--eCCEEEEEeCCCcEEEEEcCCCccccceeeeEEcCCccccEEEEeCCCCCCEEE
Q 003579 86 -V--A---T-WSRHSAKVNLLL-L--FGEHILSIDIDGNMFIWAFKGIEENLAPVGHVKLDDKFTPTCIMHPDTYLNKVI 155 (809)
Q Consensus 86 -~--~---~-~~~h~~~V~~l~-~--~g~~l~s~~~dg~i~vWd~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~l~ 155 (809)
. . . +.....-|+++. | .=+.++.|+.+|.+++|++.+++. +.+++.....+. ++-+..-+..++
T Consensus 145 ~~e~~l~~~~~~~~~~~Ital~HP~TYLNKIvvGs~~G~lql~Nvrt~K~----v~~f~~~~s~IT--~ieqsPaLDVVa 218 (910)
T KOG1539|consen 145 QEELYLQSTFLKVEGDFITALLHPSTYLNKIVVGSSQGRLQLWNVRTGKV----VYTFQEFFSRIT--AIEQSPALDVVA 218 (910)
T ss_pred cccccccceeeeccCCceeeEecchhheeeEEEeecCCcEEEEEeccCcE----EEEeccccccee--EeccCCcceEEE
Confidence 1 1 1 222222377776 3 246688889999999999999998 777766554443 344444458999
Q ss_pred EEeCCCeEEEEeCCCCceEEEEcCCCCCEEEEEEcCCCC-EEEEEeCCCeEEEEEeeCCeEEEEEeccCCCcEEEEEEec
Q 003579 156 VGSQEGSLQLWNISTKKKLYEFKGWGSSISSCVSSPALD-VVAVGCSDGKIHVHNVRYDEELVTFTHSMRGAVTALAFSS 234 (809)
Q Consensus 156 ~~~~dg~i~lwd~~~~~~~~~~~~~~~~I~~l~~sp~~~-~la~g~~dg~i~iwd~~~~~~~~~~~~~~~~~V~~l~fs~ 234 (809)
+|..+|+|.++|++.++.+.+|+...++|++++|..||. .+|+|+..|.+.+||++..+.+......|.+.|..+.|.+
T Consensus 219 iG~~~G~ViifNlK~dkil~sFk~d~g~VtslSFrtDG~p~las~~~~G~m~~wDLe~kkl~~v~~nah~~sv~~~~fl~ 298 (910)
T KOG1539|consen 219 IGLENGTVIIFNLKFDKILMSFKQDWGRVTSLSFRTDGNPLLASGRSNGDMAFWDLEKKKLINVTRNAHYGSVTGATFLP 298 (910)
T ss_pred EeccCceEEEEEcccCcEEEEEEccccceeEEEeccCCCeeEEeccCCceEEEEEcCCCeeeeeeeccccCCcccceecC
Confidence 999999999999999999999997679999999999986 6777888899999999998888888877789999999998
Q ss_pred CCCCEEEEEcCCCcEEEEECCCc----eeeeeeecccccceEEEEEe-cCCCEEEEEcCCCcEEEEEeeCCCCCceeEE-
Q 003579 235 DGQPLLASGASSGVISIWNLEKR----RLQSVIREAHDNAIISLHFF-ANEPVLMSASADNSIKMWIFDTTDGDPRLLR- 308 (809)
Q Consensus 235 dg~~~lasg~~dg~I~iwdl~~~----~~~~~~~~~h~~~V~~l~~~-~~~~~l~s~s~d~~i~vw~~~~~~~~~~~~~- 308 (809)
... ++++++.|..+++|=.+++ +.++. +.+|..+..++.|. .++..+.+++.|++++.+++-.......+.+
T Consensus 299 ~ep-Vl~ta~~DnSlk~~vfD~~dg~pR~LR~-R~GHs~Pp~~irfy~~~g~~ilsa~~Drt~r~fs~~~e~~~~~l~~~ 376 (910)
T KOG1539|consen 299 GEP-VLVTAGADNSLKVWVFDSGDGVPRLLRS-RGGHSAPPSCIRFYGSQGHFILSAKQDRTLRSFSVISESQSQELGQL 376 (910)
T ss_pred CCc-eEeeccCCCceeEEEeeCCCCcchheee-ccCCCCCchheeeeccCcEEEEecccCcchhhhhhhHHHHhHhhccc
Confidence 666 9999999999988855543 34443 35999999999998 6788999999999999886643211111111
Q ss_pred -------------eccCCCCCCeeEEEec-----CCCEEEEEECCCCEEEEEeeecccce-ecchhhHHHHHhhccchhh
Q 003579 309 -------------FRSGHSAPPLCIRFYA-----NGRHILSAGQDRAFRLFSVIQDQQSR-ELSQRHVAKRARKLKMKEE 369 (809)
Q Consensus 309 -------------~~~~h~~~v~~i~~~~-----~~~~l~s~~~dg~i~~wd~~~~~~~~-~~~~~~~~~~~~~~~~~~~ 369 (809)
...-.-.+|..+++.. ..+.++..-.+..++.|+.++...-. .+...
T Consensus 377 ~~~~~~kk~~~~~~~~~k~p~i~~fa~~~~RE~~W~Nv~~~h~~~~~~~tW~~~n~~~G~~~L~~~-------------- 442 (910)
T KOG1539|consen 377 HNKKRAKKVNVFSTEKLKLPPIVEFAFENAREKEWDNVITAHKGKRSAYTWNFRNKTSGRHVLDPK-------------- 442 (910)
T ss_pred ccccccccccccchhhhcCCcceeeecccchhhhhcceeEEecCcceEEEEeccCcccccEEecCc--------------
Confidence 0011124666666654 23355555667889999987654421 11110
Q ss_pred hhccCceeEEeeccccccccceeEEeecCCceEEEEEeeeeeecceeeecCCCCCCCeEEEEEcCCCCEEEEEeCCCcEE
Q 003579 370 ELKLKPVIAFDCAEIRERDWCNVVTCHMDTAQAYVWRLQNFVLGEHILRPCPENPTAVKACTISACGNFAVLGTAGGWIE 449 (809)
Q Consensus 370 ~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~v~~v~~s~~g~~l~~g~~~g~i~ 449 (809)
..+-..+.+.+++.. .-.+.+..+...+.+..|+++.+... ..+.....|..+|+.++...-++.+++++.+|.+.
T Consensus 443 ~~~~~~~~~~av~vs---~CGNF~~IG~S~G~Id~fNmQSGi~r-~sf~~~~ah~~~V~gla~D~~n~~~vsa~~~Gilk 518 (910)
T KOG1539|consen 443 RFKKDDINATAVCVS---FCGNFVFIGYSKGTIDRFNMQSGIHR-KSFGDSPAHKGEVTGLAVDGTNRLLVSAGADGILK 518 (910)
T ss_pred cccccCcceEEEEEe---ccCceEEEeccCCeEEEEEcccCeee-cccccCccccCceeEEEecCCCceEEEccCcceEE
Confidence 000011111111111 11245667778899999999987663 33333456789999999999999999999999999
Q ss_pred EEECCCCceeeeeeCcccccccCccccEEEEEEcCCCCEEEEEeCcCeEEEEECCCCceeeeeec-CCCeEEEEEeeCCC
Q 003579 450 RFNLQSGISRGSYLDMSERSNYAHNGEVVGVACDSTNTLMISAGYHGDIKVWDFKGRDLKSRWEV-GCSLVKIVYHRVNG 528 (809)
Q Consensus 450 i~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~-~~~i~~~~~s~~~~ 528 (809)
+||.........+. -...+.++..+.....++.+..|-.|+++|..+.+.++.+.. ...|+.++|||||+
T Consensus 519 fw~f~~k~l~~~l~---------l~~~~~~iv~hr~s~l~a~~~ddf~I~vvD~~t~kvvR~f~gh~nritd~~FS~Dgr 589 (910)
T KOG1539|consen 519 FWDFKKKVLKKSLR---------LGSSITGIVYHRVSDLLAIALDDFSIRVVDVVTRKVVREFWGHGNRITDMTFSPDGR 589 (910)
T ss_pred EEecCCcceeeeec---------cCCCcceeeeeehhhhhhhhcCceeEEEEEchhhhhhHHhhccccceeeeEeCCCCc
Confidence 99999988777663 456788888888888999999999999999999999999984 58999999999999
Q ss_pred EEEEEeCCCeEEEEEcCCCeEEEEEecCCCCeeeEEECCCCCEEEEEeCC-CeEEEEEc
Q 003579 529 LLATVADDLVIRLFDVVALRMVRKFEGHTDRITDFCFSEDGKWLLSSGMD-GSLRIWDV 586 (809)
Q Consensus 529 ~la~~~~d~~I~v~d~~~~~~~~~~~~h~~~I~~l~fspdg~~l~s~s~D-~~I~vwd~ 586 (809)
+|++++.|++|++||+.++.++-.+. -..+++++.|||+|.+|||+..| .-|++|-=
T Consensus 590 WlisasmD~tIr~wDlpt~~lID~~~-vd~~~~sls~SPngD~LAT~Hvd~~gIylWsN 647 (910)
T KOG1539|consen 590 WLISASMDSTIRTWDLPTGTLIDGLL-VDSPCTSLSFSPNGDFLATVHVDQNGIYLWSN 647 (910)
T ss_pred EEEEeecCCcEEEEeccCcceeeeEe-cCCcceeeEECCCCCEEEEEEecCceEEEEEc
Confidence 99999999999999999999988775 56789999999999999999988 56999963
No 30
>KOG0295 consensus WD40 repeat-containing protein [Function unknown]
Probab=100.00 E-value=1.6e-36 Score=287.81 Aligned_cols=303 Identities=23% Similarity=0.376 Sum_probs=267.3
Q ss_pred CCceEEEEcCCCCCEEEEEEcCCCCEEEEEeCCCeEEEEEeeCCeEEEEEeccCCCcEEEEEEecCCCCEEEEEcCCCcE
Q 003579 170 TKKKLYEFKGWGSSISSCVSSPALDVVAVGCSDGKIHVHNVRYDEELVTFTHSMRGAVTALAFSSDGQPLLASGASSGVI 249 (809)
Q Consensus 170 ~~~~~~~~~~~~~~I~~l~~sp~~~~la~g~~dg~i~iwd~~~~~~~~~~~~~~~~~V~~l~fs~dg~~~lasg~~dg~I 249 (809)
...+.+.+.+|..+|+.+-|+|+-..+++++.|++|++||..+++....+++| ...+.+++|+..|+ +||+++.|=.+
T Consensus 97 Rp~l~~~l~g~r~~vt~v~~hp~~~~v~~as~d~tikv~D~~tg~~e~~LrGH-t~sv~di~~~a~Gk-~l~tcSsDl~~ 174 (406)
T KOG0295|consen 97 RPNLVQKLAGHRSSVTRVIFHPSEALVVSASEDATIKVFDTETGELERSLRGH-TDSVFDISFDASGK-YLATCSSDLSA 174 (406)
T ss_pred CCCchhhhhccccceeeeeeccCceEEEEecCCceEEEEEccchhhhhhhhcc-ccceeEEEEecCcc-EEEecCCccch
Confidence 34566778899999999999999999999999999999999999998888887 66699999999999 99999999889
Q ss_pred EEEECCC-ceeeeeeecccccceEEEEEecCCCEEEEEcCCCcEEEEEeeCCCCCceeEEeccCCCCCCeeEEEecCCCE
Q 003579 250 SIWNLEK-RRLQSVIREAHDNAIISLHFFANEPVLMSASADNSIKMWIFDTTDGDPRLLRFRSGHSAPPLCIRFYANGRH 328 (809)
Q Consensus 250 ~iwdl~~-~~~~~~~~~~h~~~V~~l~~~~~~~~l~s~s~d~~i~vw~~~~~~~~~~~~~~~~~h~~~v~~i~~~~~~~~ 328 (809)
.+||.++ .+++..+. +|...|.+++|.|.|.++++++.|++|+.|+++++ -++..+.+|...|..++.+.||..
T Consensus 175 ~LWd~~~~~~c~ks~~-gh~h~vS~V~f~P~gd~ilS~srD~tik~We~~tg----~cv~t~~~h~ewvr~v~v~~DGti 249 (406)
T KOG0295|consen 175 KLWDFDTFFRCIKSLI-GHEHGVSSVFFLPLGDHILSCSRDNTIKAWECDTG----YCVKTFPGHSEWVRMVRVNQDGTI 249 (406)
T ss_pred hheeHHHHHHHHHHhc-CcccceeeEEEEecCCeeeecccccceeEEecccc----eeEEeccCchHhEEEEEecCCeeE
Confidence 9999987 46666666 89999999999999999999999999999999987 688999999999999999999999
Q ss_pred EEEEECCCCEEEEEeeecccceecchhhHHHHHhhccchhhhhccCceeEEeeccccccccceeEEeecCCceEEEEEee
Q 003579 329 ILSAGQDRAFRLFSVIQDQQSRELSQRHVAKRARKLKMKEEELKLKPVIAFDCAEIRERDWCNVVTCHMDTAQAYVWRLQ 408 (809)
Q Consensus 329 l~s~~~dg~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~ 408 (809)
+++++.|.++++|-+.+.++..++
T Consensus 250 ~As~s~dqtl~vW~~~t~~~k~~l-------------------------------------------------------- 273 (406)
T KOG0295|consen 250 IASCSNDQTLRVWVVATKQCKAEL-------------------------------------------------------- 273 (406)
T ss_pred EEecCCCceEEEEEeccchhhhhh--------------------------------------------------------
Confidence 999999999999988665433221
Q ss_pred eeeecceeeecCCCCCCCeEEEEEcCCCCEEEEEeCCCcEEEEECCCCceeeeeeCcccccccCccccEEEEEEcCCCCE
Q 003579 409 NFVLGEHILRPCPENPTAVKACTISACGNFAVLGTAGGWIERFNLQSGISRGSYLDMSERSNYAHNGEVVGVACDSTNTL 488 (809)
Q Consensus 409 ~~~~~~~~~~~~~~~~~~v~~v~~s~~g~~l~~g~~~g~i~i~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~ 488 (809)
..|..+|.+++|.|...+
T Consensus 274 --------------------------------------------------------------R~hEh~vEci~wap~~~~ 291 (406)
T KOG0295|consen 274 --------------------------------------------------------------REHEHPVECIAWAPESSY 291 (406)
T ss_pred --------------------------------------------------------------hccccceEEEEecccccC
Confidence 267788888888776431
Q ss_pred E----EEEeCcCeEEEEECCCCceeeeeecCCCeEEEEEeeCCCEEEEEeCCCeEEEEEcCCCeEEEEEecCCCCeeeEE
Q 003579 489 M----ISAGYHGDIKVWDFKGRDLKSRWEVGCSLVKIVYHRVNGLLATVADDLVIRLFDVVALRMVRKFEGHTDRITDFC 564 (809)
Q Consensus 489 l----~s~~~dg~i~iwd~~~~~~~~~~~~~~~i~~~~~s~~~~~la~~~~d~~I~v~d~~~~~~~~~~~~h~~~I~~l~ 564 (809)
= ++++.+ .+.++.+++.|++|++||+.++.++.++.||.+.|.+++
T Consensus 292 ~~i~~at~~~~------------------------------~~~~l~s~SrDktIk~wdv~tg~cL~tL~ghdnwVr~~a 341 (406)
T KOG0295|consen 292 PSISEATGSTN------------------------------GGQVLGSGSRDKTIKIWDVSTGMCLFTLVGHDNWVRGVA 341 (406)
T ss_pred cchhhccCCCC------------------------------CccEEEeecccceEEEEeccCCeEEEEEecccceeeeeE
Confidence 1 111111 367899999999999999999999999999999999999
Q ss_pred ECCCCCEEEEEeCCCeEEEEEcCCccEEEEeeeCcc-eEEEEEcCCCCeEEEEEeCCCeEEEeec
Q 003579 565 FSEDGKWLLSSGMDGSLRIWDVILARQIDAIHVDVS-ITALSLSPNMDVLATAHVDQNGVYLWVN 628 (809)
Q Consensus 565 fspdg~~l~s~s~D~~I~vwd~~~~~~i~~~~~~~~-v~~l~~spdg~~lat~~~d~~~i~lW~~ 628 (809)
|+|.|+||+++..|+++++||+.++++...+..|.. |+++.|+.+-.|++||+.|. .+++|.-
T Consensus 342 f~p~Gkyi~ScaDDktlrvwdl~~~~cmk~~~ah~hfvt~lDfh~~~p~VvTGsVdq-t~KvwEc 405 (406)
T KOG0295|consen 342 FSPGGKYILSCADDKTLRVWDLKNLQCMKTLEAHEHFVTSLDFHKTAPYVVTGSVDQ-TVKVWEC 405 (406)
T ss_pred EcCCCeEEEEEecCCcEEEEEeccceeeeccCCCcceeEEEecCCCCceEEeccccc-eeeeeec
Confidence 999999999999999999999999999999987766 99999999999999999999 6999964
No 31
>KOG2048 consensus WD40 repeat protein [General function prediction only]
Probab=100.00 E-value=6.6e-33 Score=283.69 Aligned_cols=530 Identities=16% Similarity=0.187 Sum_probs=391.3
Q ss_pred CCCCCcEEEEEeCCeEEEEECCe---EEEEECCee---EEEEccc-cccEEEEEEe-CCEEEEEeCCCcEEEEEcCCCcc
Q 003579 54 QLPKKIRALASYRDYTFAAYGNH---IAVVKRAHQ---VATWSRH-SAKVNLLLLF-GEHILSIDIDGNMFIWAFKGIEE 125 (809)
Q Consensus 54 ~~~~~I~~la~~~~~~~~a~g~~---i~vw~~~~~---~~~~~~h-~~~V~~l~~~-g~~l~s~~~dg~i~vWd~~~~~~ 125 (809)
-.|..|+|||++.+..-+|.+.. |.+|+...- ...+.|+ ...|.+++|. |..|.|.+.+|.|.-||+.+.+.
T Consensus 23 ~~Ps~I~slA~s~kS~~lAvsRt~g~IEiwN~~~~w~~~~vi~g~~drsIE~L~W~e~~RLFS~g~sg~i~EwDl~~lk~ 102 (691)
T KOG2048|consen 23 YKPSEIVSLAYSHKSNQLAVSRTDGNIEIWNLSNNWFLEPVIHGPEDRSIESLAWAEGGRLFSSGLSGSITEWDLHTLKQ 102 (691)
T ss_pred eeccceEEEEEeccCCceeeeccCCcEEEEccCCCceeeEEEecCCCCceeeEEEccCCeEEeecCCceEEEEecccCce
Confidence 46899999999988666666543 999986432 3335555 5589999995 99999999999999999999887
Q ss_pred ccceeeeEEcCCccccEEEEeCCCCCCEEEEEeCCCeEEEEeCCCCceEEE--EcCCCCCEEEEEEcCCCCEEEEEeCCC
Q 003579 126 NLAPVGHVKLDDKFTPTCIMHPDTYLNKVIVGSQEGSLQLWNISTKKKLYE--FKGWGSSISSCVSSPALDVVAVGCSDG 203 (809)
Q Consensus 126 ~~~~~~~~~~~~~~~~~~~~~p~~~~~~l~~~~~dg~i~lwd~~~~~~~~~--~~~~~~~I~~l~~sp~~~~la~g~~dg 203 (809)
...+....+.+++++.+|.+ ..+++|+.||.+..+++..++..+. |....+.|.++.|+|++..|+.|+.||
T Consensus 103 ----~~~~d~~gg~IWsiai~p~~--~~l~IgcddGvl~~~s~~p~~I~~~r~l~rq~sRvLslsw~~~~~~i~~Gs~Dg 176 (691)
T KOG2048|consen 103 ----KYNIDSNGGAIWSIAINPEN--TILAIGCDDGVLYDFSIGPDKITYKRSLMRQKSRVLSLSWNPTGTKIAGGSIDG 176 (691)
T ss_pred ----eEEecCCCcceeEEEeCCcc--ceEEeecCCceEEEEecCCceEEEEeecccccceEEEEEecCCccEEEecccCc
Confidence 67777788889999999999 8999999999888888888887765 444568999999999999999999999
Q ss_pred eEEEEEeeCCeEEEEEe-------ccCCCcEEEEEEecCCCCEEEEEcCCCcEEEEECCCceeeeeeecccccceEEEEE
Q 003579 204 KIHVHNVRYDEELVTFT-------HSMRGAVTALAFSSDGQPLLASGASSGVISIWNLEKRRLQSVIREAHDNAIISLHF 276 (809)
Q Consensus 204 ~i~iwd~~~~~~~~~~~-------~~~~~~V~~l~fs~dg~~~lasg~~dg~I~iwdl~~~~~~~~~~~~h~~~V~~l~~ 276 (809)
.|++||..++..++... .....-|.++.|..++. +++|...|+|.+||...+.++.... .|.+.|.+++.
T Consensus 177 ~Iriwd~~~~~t~~~~~~~~d~l~k~~~~iVWSv~~Lrd~t--I~sgDS~G~V~FWd~~~gTLiqS~~-~h~adVl~Lav 253 (691)
T KOG2048|consen 177 VIRIWDVKSGQTLHIITMQLDRLSKREPTIVWSVLFLRDST--IASGDSAGTVTFWDSIFGTLIQSHS-CHDADVLALAV 253 (691)
T ss_pred eEEEEEcCCCceEEEeeecccccccCCceEEEEEEEeecCc--EEEecCCceEEEEcccCcchhhhhh-hhhcceeEEEE
Confidence 99999999998877332 21234688999998885 8999999999999999999999998 89999999999
Q ss_pred ecCCCEEEEEcCCCcEEEEEeeCCCCCceeEEeccCCCCCCeeEEEecCCCEEEEEECCCCEEEEEeeecccceecchhh
Q 003579 277 FANEPVLMSASADNSIKMWIFDTTDGDPRLLRFRSGHSAPPLCIRFYANGRHILSAGQDRAFRLFSVIQDQQSRELSQRH 356 (809)
Q Consensus 277 ~~~~~~l~s~s~d~~i~vw~~~~~~~~~~~~~~~~~h~~~v~~i~~~~~~~~l~s~~~dg~i~~wd~~~~~~~~~~~~~~ 356 (809)
.+++.+++++|.|+.|..+.......++.....+..|...+.+++..++ .+++|+.|..+.+-..+........ +..
T Consensus 254 ~~~~d~vfsaGvd~~ii~~~~~~~~~~wv~~~~r~~h~hdvrs~av~~~--~l~sgG~d~~l~i~~s~~~~~~~h~-~~~ 330 (691)
T KOG2048|consen 254 ADNEDRVFSAGVDPKIIQYSLTTNKSEWVINSRRDLHAHDVRSMAVIEN--ALISGGRDFTLAICSSREFKNMDHR-QKN 330 (691)
T ss_pred cCCCCeEEEccCCCceEEEEecCCccceeeeccccCCcccceeeeeecc--eEEecceeeEEEEccccccCchhhh-ccc
Confidence 9999999999999999999877766555566677899999999999977 8999999999888766542211111 000
Q ss_pred HHHHHhhccchhhhhccCceeEEeeccccccccceeEEeecC--------CceEEEEEeeeeee-----cceeeecCCCC
Q 003579 357 VAKRARKLKMKEEELKLKPVIAFDCAEIRERDWCNVVTCHMD--------TAQAYVWRLQNFVL-----GEHILRPCPEN 423 (809)
Q Consensus 357 ~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~--------~~~~~~w~~~~~~~-----~~~~~~~~~~~ 423 (809)
.++ ...++.+... ...+.+|.+..... ..+.+......
T Consensus 331 ---------------~~p--------------~~~~v~~a~~~~L~~~w~~h~v~lwrlGS~~~~g~~~~~~Llkl~~k~ 381 (691)
T KOG2048|consen 331 ---------------LFP--------------ASDRVSVAPENRLLVLWKAHGVDLWRLGSVILQGEYNYIHLLKLFTKE 381 (691)
T ss_pred ---------------ccc--------------ccceeecCccceEEEEeccccccceeccCcccccccChhhheeeecCC
Confidence 000 0011222222 23333444433211 12334444445
Q ss_pred CCCeEEEEEcCCCCEEEEEeCCCcEEEEECCCCceeeeeeCcccccccCccccEEEEEEcCCCCEEEEEe-CcCeEEEEE
Q 003579 424 PTAVKACTISACGNFAVLGTAGGWIERFNLQSGISRGSYLDMSERSNYAHNGEVVGVACDSTNTLMISAG-YHGDIKVWD 502 (809)
Q Consensus 424 ~~~v~~v~~s~~g~~l~~g~~~g~i~i~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~l~s~~-~dg~i~iwd 502 (809)
...+.+.++||||++++.++-. ..++|.++.......... .......-....+.|+-++..++.++ .+..+...+
T Consensus 382 ~~nIs~~aiSPdg~~Ia~st~~-~~~iy~L~~~~~vk~~~v---~~~~~~~~~a~~i~ftid~~k~~~~s~~~~~le~~e 457 (691)
T KOG2048|consen 382 KENISCAAISPDGNLIAISTVS-RTKIYRLQPDPNVKVINV---DDVPLALLDASAISFTIDKNKLFLVSKNIFSLEEFE 457 (691)
T ss_pred ccceeeeccCCCCCEEEEeecc-ceEEEEeccCcceeEEEe---ccchhhhccceeeEEEecCceEEEEecccceeEEEE
Confidence 6789999999999999998754 467777766432221110 01123334567788888887777777 778888888
Q ss_pred CCCCceeeee--e---cCCCeEEEEEeeCCCEEEEEeCCCeEEEEEcCCCeEEEEEecCCCCeeeEEECC-CCCEEEEEe
Q 003579 503 FKGRDLKSRW--E---VGCSLVKIVYHRVNGLLATVADDLVIRLFDVVALRMVRKFEGHTDRITDFCFSE-DGKWLLSSG 576 (809)
Q Consensus 503 ~~~~~~~~~~--~---~~~~i~~~~~s~~~~~la~~~~d~~I~v~d~~~~~~~~~~~~h~~~I~~l~fsp-dg~~l~s~s 576 (809)
+.+....... . .-..|+.++.+++|+++|+.+..|.|.+|++++++.......-...|+.++|+| +-..|+.+.
T Consensus 458 l~~ps~kel~~~~~~~~~~~I~~l~~SsdG~yiaa~~t~g~I~v~nl~~~~~~~l~~rln~~vTa~~~~~~~~~~lvvat 537 (691)
T KOG2048|consen 458 LETPSFKELKSIQSQAKCPSISRLVVSSDGNYIAAISTRGQIFVYNLETLESHLLKVRLNIDVTAAAFSPFVRNRLVVAT 537 (691)
T ss_pred ecCcchhhhhccccccCCCcceeEEEcCCCCEEEEEeccceEEEEEcccceeecchhccCcceeeeeccccccCcEEEEe
Confidence 7765433322 2 226899999999999999999999999999999876554434457899999996 456788888
Q ss_pred CCCeEEEEEcCCccEEEEee------------eCcceEEEEEcCCCCeEEEEEeCCCeEEEeecC
Q 003579 577 MDGSLRIWDVILARQIDAIH------------VDVSITALSLSPNMDVLATAHVDQNGVYLWVNR 629 (809)
Q Consensus 577 ~D~~I~vwd~~~~~~i~~~~------------~~~~v~~l~~spdg~~lat~~~d~~~i~lW~~~ 629 (809)
.|+.|.-||++..++-+... ....+..+.|+|........+... -+++-+..
T Consensus 538 s~nQv~efdi~~~~l~~ws~~nt~nlpk~~~~l~~~~~gisfd~~n~s~~~~~~a~-w~~~id~~ 601 (691)
T KOG2048|consen 538 SNNQVFEFDIEARNLTRWSKNNTRNLPKEPKTLIPGIPGISFDPKNSSRFIVYDAH-WSCLIDFS 601 (691)
T ss_pred cCCeEEEEecchhhhhhhhhccccccccChhhcCCCCceEEeCCCCccEEEEEcCc-EEEEEecC
Confidence 89999999996443222111 123488888988776655555544 36666644
No 32
>KOG0276 consensus Vesicle coat complex COPI, beta' subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=100.00 E-value=9.4e-34 Score=286.16 Aligned_cols=463 Identities=14% Similarity=0.206 Sum_probs=342.9
Q ss_pred CCCCCCcEEEEEeCCeEEEEE---CCeEEEEECCee--EEEEccccccEEEEEE--eCCEEEEEeCCCcEEEEEcCCCcc
Q 003579 53 PQLPKKIRALASYRDYTFAAY---GNHIAVVKRAHQ--VATWSRHSAKVNLLLL--FGEHILSIDIDGNMFIWAFKGIEE 125 (809)
Q Consensus 53 ~~~~~~I~~la~~~~~~~~a~---g~~i~vw~~~~~--~~~~~~h~~~V~~l~~--~g~~l~s~~~dg~i~vWd~~~~~~ 125 (809)
..+..+|.++.++|..-++-+ .+.|.+|+..++ +..+.-...||.+..| -.+|+++|+.|..|+|++..+.+.
T Consensus 10 ~~rSdRVKsVd~HPtePw~la~LynG~V~IWnyetqtmVksfeV~~~PvRa~kfiaRknWiv~GsDD~~IrVfnynt~ek 89 (794)
T KOG0276|consen 10 QSRSDRVKSVDFHPTEPWILAALYNGDVQIWNYETQTMVKSFEVSEVPVRAAKFIARKNWIVTGSDDMQIRVFNYNTGEK 89 (794)
T ss_pred hccCCceeeeecCCCCceEEEeeecCeeEEEecccceeeeeeeecccchhhheeeeccceEEEecCCceEEEEeccccee
Confidence 347889999999998555433 566999986554 5557777888888877 478999999999999999999999
Q ss_pred ccceeeeEEcCCccccEEEEeCCCCCCEEEEEeCCCeEEEEeCCCC-ceEEEEcCCCCCEEEEEEcC-CCCEEEEEeCCC
Q 003579 126 NLAPVGHVKLDDKFTPTCIMHPDTYLNKVIVGSQEGSLQLWNISTK-KKLYEFKGWGSSISSCVSSP-ALDVVAVGCSDG 203 (809)
Q Consensus 126 ~~~~~~~~~~~~~~~~~~~~~p~~~~~~l~~~~~dg~i~lwd~~~~-~~~~~~~~~~~~I~~l~~sp-~~~~la~g~~dg 203 (809)
+.+++.|..++.+.+.||.. .+++++|.|-+|++||.+.. .+.++|.||..-|.+++|.| |.+.+|+++-|+
T Consensus 90 ----V~~FeAH~DyIR~iavHPt~--P~vLtsSDDm~iKlW~we~~wa~~qtfeGH~HyVMqv~fnPkD~ntFaS~sLDr 163 (794)
T KOG0276|consen 90 ----VKTFEAHSDYIRSIAVHPTL--PYVLTSSDDMTIKLWDWENEWACEQTFEGHEHYVMQVAFNPKDPNTFASASLDR 163 (794)
T ss_pred ----eEEeeccccceeeeeecCCC--CeEEecCCccEEEEeeccCceeeeeEEcCcceEEEEEEecCCCccceeeeeccc
Confidence 99999999999999999998 89999999999999999754 78899999999999999999 568999999999
Q ss_pred eEEEEEeeCCeEEEEEeccCCCcEEEEEEecCC-CCEEEEEcCCCcEEEEECCCceeeeeeecccccceEEEEEecCCCE
Q 003579 204 KIHVHNVRYDEELVTFTHSMRGAVTALAFSSDG-QPLLASGASSGVISIWNLEKRRLQSVIREAHDNAIISLHFFANEPV 282 (809)
Q Consensus 204 ~i~iwd~~~~~~~~~~~~~~~~~V~~l~fs~dg-~~~lasg~~dg~I~iwdl~~~~~~~~~~~~h~~~V~~l~~~~~~~~ 282 (809)
+|++|.+.+..+..++.+| ...|.|+.|-+.| +++|++|+.|.+|+|||.++..++.++. +|...|..+.|+|.-++
T Consensus 164 TVKVWslgs~~~nfTl~gH-ekGVN~Vdyy~~gdkpylIsgaDD~tiKvWDyQtk~CV~TLe-GHt~Nvs~v~fhp~lpi 241 (794)
T KOG0276|consen 164 TVKVWSLGSPHPNFTLEGH-EKGVNCVDYYTGGDKPYLISGADDLTIKVWDYQTKSCVQTLE-GHTNNVSFVFFHPELPI 241 (794)
T ss_pred cEEEEEcCCCCCceeeecc-ccCcceEEeccCCCcceEEecCCCceEEEeecchHHHHHHhh-cccccceEEEecCCCcE
Confidence 9999999999999999976 7889999998865 5699999999999999999999999999 99999999999999999
Q ss_pred EEEEcCCCcEEEEEeeCCCCCceeEEeccCCCCCCeeEEEecCCCEEEEEECCCCEEEEEeeecccceecchhhHHHHHh
Q 003579 283 LMSASADNSIKMWIFDTTDGDPRLLRFRSGHSAPPLCIRFYANGRHILSAGQDRAFRLFSVIQDQQSRELSQRHVAKRAR 362 (809)
Q Consensus 283 l~s~s~d~~i~vw~~~~~~~~~~~~~~~~~h~~~v~~i~~~~~~~~l~s~~~dg~i~~wd~~~~~~~~~~~~~~~~~~~~ 362 (809)
+++|+.||++|+|.-.+ .++...+.-.-..+.||+..+.+..++.|...|.+. ..+-.+.+...+....
T Consensus 242 iisgsEDGTvriWhs~T----y~lE~tLn~gleRvW~I~~~k~~~~i~vG~Deg~i~-v~lgreeP~vsMd~~g------ 310 (794)
T KOG0276|consen 242 IISGSEDGTVRIWNSKT----YKLEKTLNYGLERVWCIAAHKGDGKIAVGFDEGSVT-VKLGREEPAVSMDSNG------ 310 (794)
T ss_pred EEEecCCccEEEecCcc----eehhhhhhcCCceEEEEeecCCCCeEEEeccCCcEE-EEccCCCCceeecCCc------
Confidence 99999999999995433 255555556667899999999888888888777654 3444433332221100
Q ss_pred hccchhhhhccCceeEEeeccccccccceeEEeecCCceEEEEEeeeee-e-cceeeec--C--CCCCCCeEEEEEcCCC
Q 003579 363 KLKMKEEELKLKPVIAFDCAEIRERDWCNVVTCHMDTAQAYVWRLQNFV-L-GEHILRP--C--PENPTAVKACTISACG 436 (809)
Q Consensus 363 ~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~-~-~~~~~~~--~--~~~~~~v~~v~~s~~g 436 (809)
.-+-+.|.+-..+.+-.+.... . ....++. . ....-....++-+|+|
T Consensus 311 ---------------------------KIiwa~~~ei~~~~~ks~~~~~ev~DgErL~LsvKeLgs~eiyPq~L~hsPNG 363 (794)
T KOG0276|consen 311 ---------------------------KIIWAVHSEIQAVNLKSVGAQKEVTDGERLPLSVKELGSVEIYPQTLAHSPNG 363 (794)
T ss_pred ---------------------------cEEEEcCceeeeeeceeccCcccccCCccccchhhhccccccchHHhccCCCC
Confidence 0011111111111111111000 0 0000000 0 0001233457889999
Q ss_pred CEEEEEeCCCcEEEEECCCCceeeeeeCcccccccCccccEEEEEEcCCCCEEEEEeCcCeEEEEECCCCceeeeeecCC
Q 003579 437 NFAVLGTAGGWIERFNLQSGISRGSYLDMSERSNYAHNGEVVGVACDSTNTLMISAGYHGDIKVWDFKGRDLKSRWEVGC 516 (809)
Q Consensus 437 ~~l~~g~~~g~i~i~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~ 516 (809)
+++++++ ||.-.+|..-.-+ ..+.+.-....|.++....+.--.++.|+++ ++.+....+....
T Consensus 364 rfV~Vcg-dGEyiIyTala~R-------------nK~fG~~~eFvw~~dsne~avRes~~~vki~--knfke~ksi~~~~ 427 (794)
T KOG0276|consen 364 RFVVVCG-DGEYIIYTALALR-------------NKAFGSGLEFVWAADSNEFAVRESNGNVKIF--KNFKEHKSIRPDM 427 (794)
T ss_pred cEEEEec-CccEEEEEeeehh-------------hcccccceeEEEcCCCCeEEEEecCCceEEE--ecceecccccccc
Confidence 9988875 5666666522111 1344666778899997778888788999988 6666666665543
Q ss_pred CeEEEEEeeCCCEEEEEeCCCeEEEEEcCCCeEEEEEecCCCCeeeEEECCCCCEEEEEeCCCeEEEEE
Q 003579 517 SLVKIVYHRVNGLLATVADDLVIRLFDVVALRMVRKFEGHTDRITDFCFSEDGKWLLSSGMDGSLRIWD 585 (809)
Q Consensus 517 ~i~~~~~s~~~~~la~~~~d~~I~v~d~~~~~~~~~~~~h~~~I~~l~fspdg~~l~s~s~D~~I~vwd 585 (809)
.... + -|..|+....++.+++||.++++.++++.-. ...+.|+.+|.+++.++.|. .++..
T Consensus 428 ~~e~--i--~gg~Llg~~ss~~~~fydW~~~~lVrrI~v~---~k~v~w~d~g~lVai~~d~S-fyil~ 488 (794)
T KOG0276|consen 428 SAEG--I--FGGPLLGVRSSDFLCFYDWESGELVRRIEVT---SKHVYWSDNGELVAIAGDDS-FYILK 488 (794)
T ss_pred ceee--e--cCCceEEEEeCCeEEEEEcccceEEEEEeec---cceeEEecCCCEEEEEecCc-eeEEE
Confidence 3111 1 1444555556778999999999999998743 34688999999988888665 34443
No 33
>KOG0292 consensus Vesicle coat complex COPI, alpha subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=100.00 E-value=1.1e-33 Score=295.93 Aligned_cols=501 Identities=14% Similarity=0.172 Sum_probs=363.9
Q ss_pred CCCCcEEEEEeCCeEEEEEC---CeEEEEE--CCeeEEEEccccccEEEEEE--eCCEEEEEeCCCcEEEEEcCCCcccc
Q 003579 55 LPKKIRALASYRDYTFAAYG---NHIAVVK--RAHQVATWSRHSAKVNLLLL--FGEHILSIDIDGNMFIWAFKGIEENL 127 (809)
Q Consensus 55 ~~~~I~~la~~~~~~~~a~g---~~i~vw~--~~~~~~~~~~h~~~V~~l~~--~g~~l~s~~~dg~i~vWd~~~~~~~~ 127 (809)
-..++..++|+|..-++-++ +.|.+|| .+..+.++.+|.++|..+.| .+..++||+.|-.|+||++++.++
T Consensus 8 kSsRvKglsFHP~rPwILtslHsG~IQlWDYRM~tli~rFdeHdGpVRgv~FH~~qplFVSGGDDykIkVWnYk~rrc-- 85 (1202)
T KOG0292|consen 8 KSSRVKGLSFHPKRPWILTSLHSGVIQLWDYRMGTLIDRFDEHDGPVRGVDFHPTQPLFVSGGDDYKIKVWNYKTRRC-- 85 (1202)
T ss_pred ccccccceecCCCCCEEEEeecCceeeeehhhhhhHHhhhhccCCccceeeecCCCCeEEecCCccEEEEEeccccee--
Confidence 35678899999996666554 3499998 47788889999999999998 588999999999999999999998
Q ss_pred ceeeeEEcCCccccEEEEeCCCCCCEEEEEeCCCeEEEEeCCCCceEEEEcCCCCCEEEEEEcCCCCEEEEEeCCCeEEE
Q 003579 128 APVGHVKLDDKFTPTCIMHPDTYLNKVIVGSQEGSLQLWNISTKKKLYEFKGWGSSISSCVSSPALDVVAVGCSDGKIHV 207 (809)
Q Consensus 128 ~~~~~~~~~~~~~~~~~~~p~~~~~~l~~~~~dg~i~lwd~~~~~~~~~~~~~~~~I~~l~~sp~~~~la~g~~dg~i~i 207 (809)
+-++..|..++.++.||+.- ..|+++|.|.+|+|||..+++++..+.||..-|.|.+|+|..+.+++++-|.+|+|
T Consensus 86 --lftL~GHlDYVRt~~FHhey--PWIlSASDDQTIrIWNwqsr~~iavltGHnHYVMcAqFhptEDlIVSaSLDQTVRV 161 (1202)
T KOG0292|consen 86 --LFTLLGHLDYVRTVFFHHEY--PWILSASDDQTIRIWNWQSRKCIAVLTGHNHYVMCAQFHPTEDLIVSASLDQTVRV 161 (1202)
T ss_pred --hhhhccccceeEEeeccCCC--ceEEEccCCCeEEEEeccCCceEEEEecCceEEEeeccCCccceEEEecccceEEE
Confidence 67778889999999999987 89999999999999999999999999999999999999999999999999999999
Q ss_pred EEeeC----------------------------CeEEEEEeccCCCcEEEEEEecCCCCEEEEEcCCCcEEEEECCCce-
Q 003579 208 HNVRY----------------------------DEELVTFTHSMRGAVTALAFSSDGQPLLASGASSGVISIWNLEKRR- 258 (809)
Q Consensus 208 wd~~~----------------------------~~~~~~~~~~~~~~V~~l~fs~dg~~~lasg~~dg~I~iwdl~~~~- 258 (809)
||+.. +..+..+..+|...|.-++|+|.-. ++++|+.|..|++|.+..-+
T Consensus 162 WDisGLRkk~~~pg~~e~~~~~~~~~~dLfg~~DaVVK~VLEGHDRGVNwaAfhpTlp-liVSG~DDRqVKlWrmnetKa 240 (1202)
T KOG0292|consen 162 WDISGLRKKNKAPGSLEDQMRGQQGNSDLFGQTDAVVKHVLEGHDRGVNWAAFHPTLP-LIVSGADDRQVKLWRMNETKA 240 (1202)
T ss_pred EeecchhccCCCCCCchhhhhccccchhhcCCcCeeeeeeecccccccceEEecCCcc-eEEecCCcceeeEEEeccccc
Confidence 99851 1123333445678899999999887 99999999999999987653
Q ss_pred -eeeeeecccccceEEEEEecCCCEEEEEcCCCcEEEEEeeCCCCCceeEEeccCCCCCCeeEEEecCCCEEEEEECCCC
Q 003579 259 -LQSVIREAHDNAIISLHFFANEPVLMSASADNSIKMWIFDTTDGDPRLLRFRSGHSAPPLCIRFYANGRHILSAGQDRA 337 (809)
Q Consensus 259 -~~~~~~~~h~~~V~~l~~~~~~~~l~s~s~d~~i~vw~~~~~~~~~~~~~~~~~h~~~v~~i~~~~~~~~l~s~~~dg~ 337 (809)
.+.+.+ +|.+.|.++-|+|.+.++++.|.|++|++||++..+ .+..+....+....++-+|..+.++. +.|+-
T Consensus 241 WEvDtcr-gH~nnVssvlfhp~q~lIlSnsEDksirVwDm~kRt----~v~tfrrendRFW~laahP~lNLfAA-gHDsG 314 (1202)
T KOG0292|consen 241 WEVDTCR-GHYNNVSSVLFHPHQDLILSNSEDKSIRVWDMTKRT----SVQTFRRENDRFWILAAHPELNLFAA-GHDSG 314 (1202)
T ss_pred eeehhhh-cccCCcceEEecCccceeEecCCCccEEEEeccccc----ceeeeeccCCeEEEEEecCCcceeee-ecCCc
Confidence 355666 999999999999999999999999999999998874 45555566677899999999876655 55666
Q ss_pred EEEEEeeecccceecchhhHHHHHhhccchhhhhccCceeEEeeccccccccceeEEeecCCceEEEEEeeeeee-ccee
Q 003579 338 FRLFSVIQDQQSRELSQRHVAKRARKLKMKEEELKLKPVIAFDCAEIRERDWCNVVTCHMDTAQAYVWRLQNFVL-GEHI 416 (809)
Q Consensus 338 i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~-~~~~ 416 (809)
+.+|.+....+...+.. +.+.... +..++.+|+.+.+- .-..
T Consensus 315 m~VFkleRErpa~~v~~------------------------------------n~LfYvk-d~~i~~~d~~t~~d~~v~~ 357 (1202)
T KOG0292|consen 315 MIVFKLERERPAYAVNG------------------------------------NGLFYVK-DRFIRSYDLRTQKDTAVAS 357 (1202)
T ss_pred eEEEEEcccCceEEEcC------------------------------------CEEEEEc-cceEEeeeccccccceeEe
Confidence 88998876554433322 1222222 77888888876322 1222
Q ss_pred eecCCCCCCCeEEEEEcCCCCEEEEEe--CCCcEEEEECCCCceeeeeeCcccccccCccccEEEEEEcCCCCEEEEEeC
Q 003579 417 LRPCPENPTAVKACTISACGNFAVLGT--AGGWIERFNLQSGISRGSYLDMSERSNYAHNGEVVGVACDSTNTLMISAGY 494 (809)
Q Consensus 417 ~~~~~~~~~~v~~v~~s~~g~~l~~g~--~~g~i~i~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~l~s~~~ 494 (809)
++.......++.++.++|..+.+++++ .+|.-.++.+.+......-.. ..........+ |-..++..+---.
T Consensus 358 lr~~g~~~~~~~smsYNpae~~vlics~~~n~~y~L~~ipk~~~~~~~~~-----~~~k~tG~~a~-fvarNrfavl~k~ 431 (1202)
T KOG0292|consen 358 LRRPGTLWQPPRSLSYNPAENAVLICSNLDNGEYELVQIPKDSDGVSDGK-----DVKKGTGEGAL-FVARNRFAVLDKS 431 (1202)
T ss_pred ccCCCcccCCcceeeeccccCeEEEEeccCCCeEEEEEecCcccccCCch-----hhhcCCCCceE-EEEecceEEEEec
Confidence 232223346788999999877666653 345556666544321111000 00011112222 2223333333333
Q ss_pred cCeEEEEECCCCceeeeeecCCCeEEEEEeeCCCEEEEEeCCCeEEEEEcCCCeEEEEEecCCCCeeeEEECCCCCEEEE
Q 003579 495 HGDIKVWDFKGRDLKSRWEVGCSLVKIVYHRVNGLLATVADDLVIRLFDVVALRMVRKFEGHTDRITDFCFSEDGKWLLS 574 (809)
Q Consensus 495 dg~i~iwd~~~~~~~~~~~~~~~i~~~~~s~~~~~la~~~~d~~I~v~d~~~~~~~~~~~~h~~~I~~l~fspdg~~l~s 574 (809)
+..+.+=++.+. ..+.+........+-+.-.|.+|+.. ...|.+||++..+.+..+. ...|.-+.||+|+.+++-
T Consensus 432 ~~~v~ik~l~N~-vtkkl~~~~~~~~IF~ag~g~lll~~--~~~v~lfdvQq~~~~~si~--~s~vkyvvws~dm~~vAl 506 (1202)
T KOG0292|consen 432 NEQVVIKNLKNK-VTKKLLLPESTDDIFYAGTGNLLLRS--PDSVTLFDVQQKKKVGSIK--VSKVKYVVWSNDMSRVAL 506 (1202)
T ss_pred CcceEEecccch-hhhcccCcccccceeeccCccEEEEc--CCeEEEEEeecceEEEEEe--cCceeEEEEcCccchhhh
Confidence 455555555432 22233333445556666666665543 4579999999988888776 467889999999988776
Q ss_pred EeCCCeEEEEEcCCccEEEEeeeCcceEEEEEcCCCCeEEEEEe
Q 003579 575 SGMDGSLRIWDVILARQIDAIHVDVSITALSLSPNMDVLATAHV 618 (809)
Q Consensus 575 ~s~D~~I~vwd~~~~~~i~~~~~~~~v~~l~~spdg~~lat~~~ 618 (809)
-+ -.+|.|.+.. -+.+..++..-.|.+-+|..+|-+|.++..
T Consensus 507 l~-Kh~i~i~~kk-L~l~~sihEtiriksgawde~gVfiYtT~n 548 (1202)
T KOG0292|consen 507 LS-KHTITIADKK-LELLCSIHETIRIKSGAWDEDGVFIYTTLN 548 (1202)
T ss_pred cc-cceEEEEecc-hhheecchheeEeeeceeccCceEEEEehh
Confidence 65 4678888854 445555555555788888888877776643
No 34
>KOG0263 consensus Transcription initiation factor TFIID, subunit TAF5 (also component of histone acetyltransferase SAGA) [Transcription]
Probab=100.00 E-value=5.4e-36 Score=312.60 Aligned_cols=280 Identities=21% Similarity=0.365 Sum_probs=242.3
Q ss_pred eEEEEcCCCCCEEEEEEcCCCCEEEEEeCCCeEEEEEeeCCeEEEEEeccCCCcEEEEEEecCCCCEEEEEcCCCcEEEE
Q 003579 173 KLYEFKGWGSSISSCVSSPALDVVAVGCSDGKIHVHNVRYDEELVTFTHSMRGAVTALAFSSDGQPLLASGASSGVISIW 252 (809)
Q Consensus 173 ~~~~~~~~~~~I~~l~~sp~~~~la~g~~dg~i~iwd~~~~~~~~~~~~~~~~~V~~l~fs~dg~~~lasg~~dg~I~iw 252 (809)
+.+++......++|..|++++..+|.|..|..|++|.+... .+..++.. ++-. .+=+++.|-.+.+.
T Consensus 370 c~YT~~nt~~~v~ca~fSddssmlA~Gf~dS~i~~~Sl~p~-kl~~lk~~--------~~l~----~~d~~sad~~~~~~ 436 (707)
T KOG0263|consen 370 CMYTFHNTYQGVTCAEFSDDSSMLACGFVDSSVRVWSLTPK-KLKKLKDA--------SDLS----NIDTESADVDVDML 436 (707)
T ss_pred EEEEEEEcCCcceeEeecCCcchhhccccccEEEEEecchh-hhccccch--------hhhc----cccccccchhhhhc
Confidence 56677777788999999999999999999999999998754 33333321 1111 12234445557778
Q ss_pred ECCCceeeeeeecccccceEEEEEecCCCEEEEEcCCCcEEEEEeeCCCCCceeEEeccCCCCCCeeEEEecCCCEEEEE
Q 003579 253 NLEKRRLQSVIREAHDNAIISLHFFANEPVLMSASADNSIKMWIFDTTDGDPRLLRFRSGHSAPPLCIRFYANGRHILSA 332 (809)
Q Consensus 253 dl~~~~~~~~~~~~h~~~V~~l~~~~~~~~l~s~s~d~~i~vw~~~~~~~~~~~~~~~~~h~~~v~~i~~~~~~~~l~s~ 332 (809)
|..+......+. +|.++|.++.|+|+.++|++++.|+++|+|.+++. ..+....||..||..+.|+|.|-+++|+
T Consensus 437 D~~~~~~~~~L~-GH~GPVyg~sFsPd~rfLlScSED~svRLWsl~t~----s~~V~y~GH~~PVwdV~F~P~GyYFata 511 (707)
T KOG0263|consen 437 DDDSSGTSRTLY-GHSGPVYGCSFSPDRRFLLSCSEDSSVRLWSLDTW----SCLVIYKGHLAPVWDVQFAPRGYYFATA 511 (707)
T ss_pred cccCCceeEEee-cCCCceeeeeecccccceeeccCCcceeeeecccc----eeEEEecCCCcceeeEEecCCceEEEec
Confidence 877777777777 99999999999999999999999999999999887 5677777999999999999999999999
Q ss_pred ECCCCEEEEEeeecccceecchhhHHHHHhhccchhhhhccCceeEEeeccccccccceeEEeecCCceEEEEEeeeeee
Q 003579 333 GQDRAFRLFSVIQDQQSRELSQRHVAKRARKLKMKEEELKLKPVIAFDCAEIRERDWCNVVTCHMDTAQAYVWRLQNFVL 412 (809)
Q Consensus 333 ~~dg~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~ 412 (809)
+.|++.++|+.......+
T Consensus 512 s~D~tArLWs~d~~~PlR-------------------------------------------------------------- 529 (707)
T KOG0263|consen 512 SHDQTARLWSTDHNKPLR-------------------------------------------------------------- 529 (707)
T ss_pred CCCceeeeeecccCCchh--------------------------------------------------------------
Confidence 999999999865422211
Q ss_pred cceeeecCCCCCCCeEEEEEcCCCCEEEEEeCCCcEEEEECCCCceeeeeeCcccccccCccccEEEEEEcCCCCEEEEE
Q 003579 413 GEHILRPCPENPTAVKACTISACGNFAVLGTAGGWIERFNLQSGISRGSYLDMSERSNYAHNGEVVGVACDSTNTLMISA 492 (809)
Q Consensus 413 ~~~~~~~~~~~~~~v~~v~~s~~g~~l~~g~~~g~i~i~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~l~s~ 492 (809)
. ..+|.+.|.|+.|+|+..++++|
T Consensus 530 ------------------------------------------------i--------faghlsDV~cv~FHPNs~Y~aTG 553 (707)
T KOG0263|consen 530 ------------------------------------------------I--------FAGHLSDVDCVSFHPNSNYVATG 553 (707)
T ss_pred ------------------------------------------------h--------hcccccccceEEECCcccccccC
Confidence 1 13899999999999999999999
Q ss_pred eCcCeEEEEECCCCceeeeeecC-CCeEEEEEeeCCCEEEEEeCCCeEEEEEcCCCeEEEEEecCCCCeeeEEECCCCCE
Q 003579 493 GYHGDIKVWDFKGRDLKSRWEVG-CSLVKIVYHRVNGLLATVADDLVIRLFDVVALRMVRKFEGHTDRITDFCFSEDGKW 571 (809)
Q Consensus 493 ~~dg~i~iwd~~~~~~~~~~~~~-~~i~~~~~s~~~~~la~~~~d~~I~v~d~~~~~~~~~~~~h~~~I~~l~fspdg~~ 571 (809)
+.|.+||+||..+|..++.+..+ ++|.+++|+|+|++||+|+.||.|.+||+.+++++..+.+|++.|.++.||.||..
T Consensus 554 SsD~tVRlWDv~~G~~VRiF~GH~~~V~al~~Sp~Gr~LaSg~ed~~I~iWDl~~~~~v~~l~~Ht~ti~SlsFS~dg~v 633 (707)
T KOG0263|consen 554 SSDRTVRLWDVSTGNSVRIFTGHKGPVTALAFSPCGRYLASGDEDGLIKIWDLANGSLVKQLKGHTGTIYSLSFSRDGNV 633 (707)
T ss_pred CCCceEEEEEcCCCcEEEEecCCCCceEEEEEcCCCceEeecccCCcEEEEEcCCCcchhhhhcccCceeEEEEecCCCE
Confidence 99999999999999999999877 99999999999999999999999999999999999999999999999999999999
Q ss_pred EEEEeCCCeEEEEEcCC
Q 003579 572 LLSSGMDGSLRIWDVIL 588 (809)
Q Consensus 572 l~s~s~D~~I~vwd~~~ 588 (809)
||+|+.|++|++||+..
T Consensus 634 Lasgg~DnsV~lWD~~~ 650 (707)
T KOG0263|consen 634 LASGGADNSVRLWDLTK 650 (707)
T ss_pred EEecCCCCeEEEEEchh
Confidence 99999999999999864
No 35
>KOG0296 consensus Angio-associated migratory cell protein (contains WD40 repeats) [Function unknown]
Probab=100.00 E-value=1.3e-34 Score=275.05 Aligned_cols=340 Identities=19% Similarity=0.270 Sum_probs=287.0
Q ss_pred eeeEEcCCccccEEEEeCCCCCCEEEEEeCCCeEEEEeCCCCceEEEEcCCCCCEEEEEEcCCCCEEEEEeCCCeEEEEE
Q 003579 130 VGHVKLDDKFTPTCIMHPDTYLNKVIVGSQEGSLQLWNISTKKKLYEFKGWGSSISSCVSSPALDVVAVGCSDGKIHVHN 209 (809)
Q Consensus 130 ~~~~~~~~~~~~~~~~~p~~~~~~l~~~~~dg~i~lwd~~~~~~~~~~~~~~~~I~~l~~sp~~~~la~g~~dg~i~iwd 209 (809)
+.++..|...+..+.++|+. +.+++|+.|..-.+|++.+|.....+.+|...|+++.||.+|.+||+|..+|.|+||.
T Consensus 57 ~~tF~~H~~svFavsl~P~~--~l~aTGGgDD~AflW~~~~ge~~~eltgHKDSVt~~~FshdgtlLATGdmsG~v~v~~ 134 (399)
T KOG0296|consen 57 LVTFDKHTDSVFAVSLHPNN--NLVATGGGDDLAFLWDISTGEFAGELTGHKDSVTCCSFSHDGTLLATGDMSGKVLVFK 134 (399)
T ss_pred eeehhhcCCceEEEEeCCCC--ceEEecCCCceEEEEEccCCcceeEecCCCCceEEEEEccCceEEEecCCCccEEEEE
Confidence 44566688888899999955 8999999999999999999999999999999999999999999999999999999999
Q ss_pred eeCCeEEEEEeccCCCcEEEEEEecCCCCEEEEEcCCCcEEEEECCCceeeeeeecccccceEEEEEecCCCEEEEEcCC
Q 003579 210 VRYDEELVTFTHSMRGAVTALAFSSDGQPLLASGASSGVISIWNLEKRRLQSVIREAHDNAIISLHFFANEPVLMSASAD 289 (809)
Q Consensus 210 ~~~~~~~~~~~~~~~~~V~~l~fs~dg~~~lasg~~dg~I~iwdl~~~~~~~~~~~~h~~~V~~l~~~~~~~~l~s~s~d 289 (809)
..++.....+... -+.+.-+.|+|.+. +|+.|+.||.+.+|.+.++...+.+. +|..++++-.|.|+|+.++++..|
T Consensus 135 ~stg~~~~~~~~e-~~dieWl~WHp~a~-illAG~~DGsvWmw~ip~~~~~kv~~-Gh~~~ct~G~f~pdGKr~~tgy~d 211 (399)
T KOG0296|consen 135 VSTGGEQWKLDQE-VEDIEWLKWHPRAH-ILLAGSTDGSVWMWQIPSQALCKVMS-GHNSPCTCGEFIPDGKRILTGYDD 211 (399)
T ss_pred cccCceEEEeecc-cCceEEEEeccccc-EEEeecCCCcEEEEECCCcceeeEec-CCCCCcccccccCCCceEEEEecC
Confidence 9999998888754 56799999999888 99999999999999999988888888 999999999999999999999999
Q ss_pred CcEEEEEeeCCCCCceeEEecc-CCCCCCeeEEEecCCCEEEEEECCCCEEEEEeeecccceecchhhHHHHHhhccchh
Q 003579 290 NSIKMWIFDTTDGDPRLLRFRS-GHSAPPLCIRFYANGRHILSAGQDRAFRLFSVIQDQQSRELSQRHVAKRARKLKMKE 368 (809)
Q Consensus 290 ~~i~vw~~~~~~~~~~~~~~~~-~h~~~v~~i~~~~~~~~l~s~~~dg~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~ 368 (809)
|+|++|+..+.. ++.... ....+..++.++..+..++.|+.++.+++.+..+++.........
T Consensus 212 gti~~Wn~ktg~----p~~~~~~~e~~~~~~~~~~~~~~~~~~g~~e~~~~~~~~~sgKVv~~~n~~~------------ 275 (399)
T KOG0296|consen 212 GTIIVWNPKTGQ----PLHKITQAEGLELPCISLNLAGSTLTKGNSEGVACGVNNGSGKVVNCNNGTV------------ 275 (399)
T ss_pred ceEEEEecCCCc----eeEEecccccCcCCccccccccceeEeccCCccEEEEccccceEEEecCCCC------------
Confidence 999999876653 222222 234567889999999999999999999888766655433322100
Q ss_pred hhhccCceeEEeeccccccccceeEEeecCCceEEEEEeeeeeecceeeecCCCCCCCeEEEEEcCCCCEEEEEeCCCcE
Q 003579 369 EELKLKPVIAFDCAEIRERDWCNVVTCHMDTAQAYVWRLQNFVLGEHILRPCPENPTAVKACTISACGNFAVLGTAGGWI 448 (809)
Q Consensus 369 ~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~v~~v~~s~~g~~l~~g~~~g~i 448 (809)
.+...........|.++.++..=...++|+-||+|
T Consensus 276 ---------------------------------------------~~l~~~~e~~~esve~~~~ss~lpL~A~G~vdG~i 310 (399)
T KOG0296|consen 276 ---------------------------------------------PELKPSQEELDESVESIPSSSKLPLAACGSVDGTI 310 (399)
T ss_pred ---------------------------------------------ccccccchhhhhhhhhcccccccchhhcccccceE
Confidence 00000001111344555556666788999999999
Q ss_pred EEEECCCCceeeeeeCcccccccCccccEEEEEEcCCCCEEEEEeCcCeEEEEECCCCceeeeeecC-CCeEEEEEeeCC
Q 003579 449 ERFNLQSGISRGSYLDMSERSNYAHNGEVVGVACDSTNTLMISAGYHGDIKVWDFKGRDLKSRWEVG-CSLVKIVYHRVN 527 (809)
Q Consensus 449 ~i~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~-~~i~~~~~s~~~ 527 (809)
.+||+.....+..+ .|...|+.+.|.+ ..+|++++.+|.|+.||.++|+++..+..+ ..|..++++|+.
T Consensus 311 ~iyD~a~~~~R~~c---------~he~~V~~l~w~~-t~~l~t~c~~g~v~~wDaRtG~l~~~y~GH~~~Il~f~ls~~~ 380 (399)
T KOG0296|consen 311 AIYDLAASTLRHIC---------EHEDGVTKLKWLN-TDYLLTACANGKVRQWDARTGQLKFTYTGHQMGILDFALSPQK 380 (399)
T ss_pred EEEecccchhheec---------cCCCceEEEEEcC-cchheeeccCceEEeeeccccceEEEEecCchheeEEEEcCCC
Confidence 99999999888877 6899999999998 789999999999999999999999999877 899999999999
Q ss_pred CEEEEEeCCCeEEEEEcC
Q 003579 528 GLLATVADDLVIRLFDVV 545 (809)
Q Consensus 528 ~~la~~~~d~~I~v~d~~ 545 (809)
+++++++.|++.+||+..
T Consensus 381 ~~vvT~s~D~~a~VF~v~ 398 (399)
T KOG0296|consen 381 RLVVTVSDDNTALVFEVP 398 (399)
T ss_pred cEEEEecCCCeEEEEecC
Confidence 999999999999999864
No 36
>KOG0645 consensus WD40 repeat protein [General function prediction only]
Probab=100.00 E-value=9.8e-34 Score=258.56 Aligned_cols=293 Identities=18% Similarity=0.308 Sum_probs=240.9
Q ss_pred ceEEEEcCCCCCEEEEEEcCC-CCEEEEEeCCCeEEEEEeeC---CeEEEEEeccCCCcEEEEEEecCCCCEEEEEcCCC
Q 003579 172 KKLYEFKGWGSSISSCVSSPA-LDVVAVGCSDGKIHVHNVRY---DEELVTFTHSMRGAVTALAFSSDGQPLLASGASSG 247 (809)
Q Consensus 172 ~~~~~~~~~~~~I~~l~~sp~-~~~la~g~~dg~i~iwd~~~---~~~~~~~~~~~~~~V~~l~fs~dg~~~lasg~~dg 247 (809)
..++.+++|.+.+..++|+|. |..||+++.|..|++|+... -.+...+...|+..|.+++|+|.|+ +||+|+.|.
T Consensus 5 ~~~~~~~gh~~r~W~~awhp~~g~ilAscg~Dk~vriw~~~~~~s~~ck~vld~~hkrsVRsvAwsp~g~-~La~aSFD~ 83 (312)
T KOG0645|consen 5 ILEQKLSGHKDRVWSVAWHPGKGVILASCGTDKAVRIWSTSSGDSWTCKTVLDDGHKRSVRSVAWSPHGR-YLASASFDA 83 (312)
T ss_pred eeEEeecCCCCcEEEEEeccCCceEEEeecCCceEEEEecCCCCcEEEEEeccccchheeeeeeecCCCc-EEEEeeccc
Confidence 456778999999999999998 88999999999999999984 3355556667789999999999999 999999999
Q ss_pred cEEEEECCCc--eeeeeeecccccceEEEEEecCCCEEEEEcCCCcEEEEEeeCCCCCceeEEeccCCCCCCeeEEEecC
Q 003579 248 VISIWNLEKR--RLQSVIREAHDNAIISLHFFANEPVLMSASADNSIKMWIFDTTDGDPRLLRFRSGHSAPPLCIRFYAN 325 (809)
Q Consensus 248 ~I~iwdl~~~--~~~~~~~~~h~~~V~~l~~~~~~~~l~s~s~d~~i~vw~~~~~~~~~~~~~~~~~h~~~v~~i~~~~~ 325 (809)
++.||.-..+ +++.++. +|.+.|.+++|+++|.+|++++.|++|-+|.++ .+.+..+...+.+|...|..+.|+|.
T Consensus 84 t~~Iw~k~~~efecv~~lE-GHEnEVK~Vaws~sG~~LATCSRDKSVWiWe~d-eddEfec~aVL~~HtqDVK~V~WHPt 161 (312)
T KOG0645|consen 84 TVVIWKKEDGEFECVATLE-GHENEVKCVAWSASGNYLATCSRDKSVWIWEID-EDDEFECIAVLQEHTQDVKHVIWHPT 161 (312)
T ss_pred eEEEeecCCCceeEEeeee-ccccceeEEEEcCCCCEEEEeeCCCeEEEEEec-CCCcEEEEeeeccccccccEEEEcCC
Confidence 9999987655 7788888 999999999999999999999999999999988 45667889999999999999999998
Q ss_pred CCEEEEEECCCCEEEEEeeecccceecchhhHHHHHhhccchhhhhccCceeEEeeccccccccceeEEeecCCceEEEE
Q 003579 326 GRHILSAGQDRAFRLFSVIQDQQSRELSQRHVAKRARKLKMKEEELKLKPVIAFDCAEIRERDWCNVVTCHMDTAQAYVW 405 (809)
Q Consensus 326 ~~~l~s~~~dg~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~w 405 (809)
...|++++.|.+|++|.-..+
T Consensus 162 ~dlL~S~SYDnTIk~~~~~~d----------------------------------------------------------- 182 (312)
T KOG0645|consen 162 EDLLFSCSYDNTIKVYRDEDD----------------------------------------------------------- 182 (312)
T ss_pred cceeEEeccCCeEEEEeecCC-----------------------------------------------------------
Confidence 889999999999999984311
Q ss_pred EeeeeeecceeeecCCCCCCCeEEEEEcCCCCEEEEEeCCCcEEEEECCCCceeeeeeCcccccccCccccEEEEEEcCC
Q 003579 406 RLQNFVLGEHILRPCPENPTAVKACTISACGNFAVLGTAGGWIERFNLQSGISRGSYLDMSERSNYAHNGEVVGVACDST 485 (809)
Q Consensus 406 ~~~~~~~~~~~~~~~~~~~~~v~~v~~s~~g~~l~~g~~~g~i~i~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~ 485 (809)
+.+..+ ..+ .+|...|.+++|++.
T Consensus 183 ------------------------------ddW~c~------------------~tl--------~g~~~TVW~~~F~~~ 206 (312)
T KOG0645|consen 183 ------------------------------DDWECV------------------QTL--------DGHENTVWSLAFDNI 206 (312)
T ss_pred ------------------------------CCeeEE------------------EEe--------cCccceEEEEEecCC
Confidence 111111 111 278888999999999
Q ss_pred CCEEEEEeCcCeEEEEECCCCceeeeeecCCCeEEEEEeeCCCEEEEEeCCCeEEEEEcCCC------eEEE-EEecCCC
Q 003579 486 NTLMISAGYHGDIKVWDFKGRDLKSRWEVGCSLVKIVYHRVNGLLATVADDLVIRLFDVVAL------RMVR-KFEGHTD 558 (809)
Q Consensus 486 ~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~i~~~~~s~~~~~la~~~~d~~I~v~d~~~~------~~~~-~~~~h~~ 558 (809)
|..|++++.|++++||...+. -...+...+..+.|. +..||+++.|+.|++|..... +++. .-..|..
T Consensus 207 G~rl~s~sdD~tv~Iw~~~~~---~~~~~sr~~Y~v~W~--~~~IaS~ggD~~i~lf~~s~~~d~p~~~l~~~~~~aHe~ 281 (312)
T KOG0645|consen 207 GSRLVSCSDDGTVSIWRLYTD---LSGMHSRALYDVPWD--NGVIASGGGDDAIRLFKESDSPDEPSWNLLAKKEGAHEV 281 (312)
T ss_pred CceEEEecCCcceEeeeeccC---cchhcccceEeeeec--ccceEeccCCCEEEEEEecCCCCCchHHHHHhhhccccc
Confidence 999999999999999975521 111233667778887 678999999999999966532 1111 2345889
Q ss_pred CeeeEEECCC-CCEEEEEeCCCeEEEEEcC
Q 003579 559 RITDFCFSED-GKWLLSSGMDGSLRIWDVI 587 (809)
Q Consensus 559 ~I~~l~fspd-g~~l~s~s~D~~I~vwd~~ 587 (809)
.|++++|.|. ...|++++.||.|++|.+.
T Consensus 282 dVNsV~w~p~~~~~L~s~~DDG~v~~W~l~ 311 (312)
T KOG0645|consen 282 DVNSVQWNPKVSNRLASGGDDGIVNFWELE 311 (312)
T ss_pred ccceEEEcCCCCCceeecCCCceEEEEEec
Confidence 9999999994 6789999999999999874
No 37
>KOG0263 consensus Transcription initiation factor TFIID, subunit TAF5 (also component of histone acetyltransferase SAGA) [Transcription]
Probab=100.00 E-value=7e-36 Score=311.80 Aligned_cols=283 Identities=25% Similarity=0.380 Sum_probs=236.6
Q ss_pred EEEEEeccCCCcEEEEEEecCCCCEEEEEcCCCcEEEEECCCceeeeeeecccccceEEEEEecCCCEEEEEcCCCcEEE
Q 003579 215 ELVTFTHSMRGAVTALAFSSDGQPLLASGASSGVISIWNLEKRRLQSVIREAHDNAIISLHFFANEPVLMSASADNSIKM 294 (809)
Q Consensus 215 ~~~~~~~~~~~~V~~l~fs~dg~~~lasg~~dg~I~iwdl~~~~~~~~~~~~h~~~V~~l~~~~~~~~l~s~s~d~~i~v 294 (809)
+..++... ...++|..|++|+. +||.|..|..|++|.+...++. .++ +...+. .+=+.+.|-.+.+
T Consensus 370 c~YT~~nt-~~~v~ca~fSddss-mlA~Gf~dS~i~~~Sl~p~kl~-~lk--~~~~l~---------~~d~~sad~~~~~ 435 (707)
T KOG0263|consen 370 CMYTFHNT-YQGVTCAEFSDDSS-MLACGFVDSSVRVWSLTPKKLK-KLK--DASDLS---------NIDTESADVDVDM 435 (707)
T ss_pred EEEEEEEc-CCcceeEeecCCcc-hhhccccccEEEEEecchhhhc-ccc--chhhhc---------cccccccchhhhh
Confidence 34445444 46799999999999 9999999999999999765432 222 221111 1223344444555
Q ss_pred EEeeCCCCCceeEEeccCCCCCCeeEEEecCCCEEEEEECCCCEEEEEeeecccceecchhhHHHHHhhccchhhhhccC
Q 003579 295 WIFDTTDGDPRLLRFRSGHSAPPLCIRFYANGRHILSAGQDRAFRLFSVIQDQQSRELSQRHVAKRARKLKMKEEELKLK 374 (809)
Q Consensus 295 w~~~~~~~~~~~~~~~~~h~~~v~~i~~~~~~~~l~s~~~dg~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 374 (809)
.|.+.. ...+.+.||.+||....|+|+.++|++++.|+++|+|++.+.....
T Consensus 436 ~D~~~~----~~~~~L~GH~GPVyg~sFsPd~rfLlScSED~svRLWsl~t~s~~V------------------------ 487 (707)
T KOG0263|consen 436 LDDDSS----GTSRTLYGHSGPVYGCSFSPDRRFLLSCSEDSSVRLWSLDTWSCLV------------------------ 487 (707)
T ss_pred ccccCC----ceeEEeecCCCceeeeeecccccceeeccCCcceeeeecccceeEE------------------------
Confidence 544433 3445577999999999999999999999999999999986432110
Q ss_pred ceeEEeeccccccccceeEEeecCCceEEEEEeeeeeecceeeecCCCCCCCeEEEEEcCCCCEEEEEeCCCcEEEEECC
Q 003579 375 PVIAFDCAEIRERDWCNVVTCHMDTAQAYVWRLQNFVLGEHILRPCPENPTAVKACTISACGNFAVLGTAGGWIERFNLQ 454 (809)
Q Consensus 375 ~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~v~~v~~s~~g~~l~~g~~~g~i~i~~~~ 454 (809)
T Consensus 488 -------------------------------------------------------------------------------- 487 (707)
T KOG0263|consen 488 -------------------------------------------------------------------------------- 487 (707)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred CCceeeeeeCcccccccCccccEEEEEEcCCCCEEEEEeCcCeEEEEECCCCceeeeeecC-CCeEEEEEeeCCCEEEEE
Q 003579 455 SGISRGSYLDMSERSNYAHNGEVVGVACDSTNTLMISAGYHGDIKVWDFKGRDLKSRWEVG-CSLVKIVYHRVNGLLATV 533 (809)
Q Consensus 455 ~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~-~~i~~~~~s~~~~~la~~ 533 (809)
.+ .+|..+|..+.|+|.|-++||++.|++-++|.....++++.+..+ +.+.|+.|||++.|+|+|
T Consensus 488 ------~y--------~GH~~PVwdV~F~P~GyYFatas~D~tArLWs~d~~~PlRifaghlsDV~cv~FHPNs~Y~aTG 553 (707)
T KOG0263|consen 488 ------IY--------KGHLAPVWDVQFAPRGYYFATASHDQTARLWSTDHNKPLRIFAGHLSDVDCVSFHPNSNYVATG 553 (707)
T ss_pred ------Ee--------cCCCcceeeEEecCCceEEEecCCCceeeeeecccCCchhhhcccccccceEEECCcccccccC
Confidence 11 389999999999999999999999999999999999999998877 899999999999999999
Q ss_pred eCCCeEEEEEcCCCeEEEEEecCCCCeeeEEECCCCCEEEEEeCCCeEEEEEcCCccEEEEeeeCcc-eEEEEEcCCCCe
Q 003579 534 ADDLVIRLFDVVALRMVRKFEGHTDRITDFCFSEDGKWLLSSGMDGSLRIWDVILARQIDAIHVDVS-ITALSLSPNMDV 612 (809)
Q Consensus 534 ~~d~~I~v~d~~~~~~~~~~~~h~~~I~~l~fspdg~~l~s~s~D~~I~vwd~~~~~~i~~~~~~~~-v~~l~~spdg~~ 612 (809)
+.|.++|+||+.+|..+|.|.||.++|++++|||+|++|++|+.||.|.+||+.+|+++..+..|.. |.++.||.||..
T Consensus 554 SsD~tVRlWDv~~G~~VRiF~GH~~~V~al~~Sp~Gr~LaSg~ed~~I~iWDl~~~~~v~~l~~Ht~ti~SlsFS~dg~v 633 (707)
T KOG0263|consen 554 SSDRTVRLWDVSTGNSVRIFTGHKGPVTALAFSPCGRYLASGDEDGLIKIWDLANGSLVKQLKGHTGTIYSLSFSRDGNV 633 (707)
T ss_pred CCCceEEEEEcCCCcEEEEecCCCCceEEEEEcCCCceEeecccCCcEEEEEcCCCcchhhhhcccCceeEEEEecCCCE
Confidence 9999999999999999999999999999999999999999999999999999999999999987765 999999999999
Q ss_pred EEEEEeCCCeEEEeecCcccCC
Q 003579 613 LATAHVDQNGVYLWVNRCMFSG 634 (809)
Q Consensus 613 lat~~~d~~~i~lW~~~~~~~~ 634 (809)
||++|.|. +|++||+...+..
T Consensus 634 Lasgg~Dn-sV~lWD~~~~~~~ 654 (707)
T KOG0263|consen 634 LASGGADN-SVRLWDLTKVIEL 654 (707)
T ss_pred EEecCCCC-eEEEEEchhhccc
Confidence 99999998 7999998755544
No 38
>KOG2106 consensus Uncharacterized conserved protein, contains HELP and WD40 domains [Function unknown]
Probab=100.00 E-value=3.6e-32 Score=268.21 Aligned_cols=454 Identities=16% Similarity=0.232 Sum_probs=342.5
Q ss_pred eEEEEEcCccEEEEecCCCCCCcEEEEEeCC--eEEEE-E--CCe--EEEEECCe--eEEEEccccccEEEEEE---eCC
Q 003579 37 AFHIYNCAKLNLVLVGPQLPKKIRALASYRD--YTFAA-Y--GNH--IAVVKRAH--QVATWSRHSAKVNLLLL---FGE 104 (809)
Q Consensus 37 ~i~iwd~~~~~~~~~~~~~~~~I~~la~~~~--~~~~a-~--g~~--i~vw~~~~--~~~~~~~h~~~V~~l~~---~g~ 104 (809)
.+++||..+++.+++.......|+|+||++- +.+++ . ++. +.|||-.+ .....+.-...|....| +.+
T Consensus 135 hvriWdsv~L~TL~V~g~f~~GV~~vaFsk~~~G~~l~~vD~s~~h~lSVWdWqk~~~~~~vk~sne~v~~a~FHPtd~n 214 (626)
T KOG2106|consen 135 HVRIWDSVTLSTLHVIGFFDRGVTCVAFSKINGGSLLCAVDDSNPHMLSVWDWQKKAKLGPVKTSNEVVFLATFHPTDPN 214 (626)
T ss_pred eeeecccccceeeeeeccccccceeeeecccCCCceEEEecCCCccccchhhchhhhccCcceeccceEEEEEeccCCCc
Confidence 3899999999999998888999999999975 44443 3 222 77776543 33345555556666666 567
Q ss_pred EEEEEeCCCcEEEEEcCCCccccceeeeEE-cCCccccEEEEeCCCCCCEEEEEeCCCeEEEEeCCCCceEEEEcCCCCC
Q 003579 105 HILSIDIDGNMFIWAFKGIEENLAPVGHVK-LDDKFTPTCIMHPDTYLNKVIVGSQEGSLQLWNISTKKKLYEFKGWGSS 183 (809)
Q Consensus 105 ~l~s~~~dg~i~vWd~~~~~~~~~~~~~~~-~~~~~~~~~~~~p~~~~~~l~~~~~dg~i~lwd~~~~~~~~~~~~~~~~ 183 (809)
.+++++ .|.+.+|+..++...... ..++ ...+++.++.|.+++. +++|..+|.|.||+..+.+..+....|.+.
T Consensus 215 liit~G-k~H~~Fw~~~~~~l~k~~-~~fek~ekk~Vl~v~F~engd---viTgDS~G~i~Iw~~~~~~~~k~~~aH~gg 289 (626)
T KOG2106|consen 215 LIITCG-KGHLYFWTLRGGSLVKRQ-GIFEKREKKFVLCVTFLENGD---VITGDSGGNILIWSKGTNRISKQVHAHDGG 289 (626)
T ss_pred EEEEeC-CceEEEEEccCCceEEEe-eccccccceEEEEEEEcCCCC---EEeecCCceEEEEeCCCceEEeEeeecCCc
Confidence 777777 899999999988763221 1222 2346777888999884 999999999999999888888887899999
Q ss_pred EEEEEEcCCCCEEEEEeCCCeEEEEEeeCCeEEEEEec-cCCCcEEEEEEecCCCCEEEEEcCCCcEEEEECCCceeeee
Q 003579 184 ISSCVSSPALDVVAVGCSDGKIHVHNVRYDEELVTFTH-SMRGAVTALAFSSDGQPLLASGASSGVISIWNLEKRRLQSV 262 (809)
Q Consensus 184 I~~l~~sp~~~~la~g~~dg~i~iwd~~~~~~~~~~~~-~~~~~V~~l~fs~dg~~~lasg~~dg~I~iwdl~~~~~~~~ 262 (809)
|.+++...+|.+|- |+.|..|..|| ..-+.++.... ...++|..++=.. . -+.+|...+.|.-=.++++-.+..
T Consensus 290 v~~L~~lr~GtllS-GgKDRki~~Wd-~~y~k~r~~elPe~~G~iRtv~e~~--~-di~vGTtrN~iL~Gt~~~~f~~~v 364 (626)
T KOG2106|consen 290 VFSLCMLRDGTLLS-GGKDRKIILWD-DNYRKLRETELPEQFGPIRTVAEGK--G-DILVGTTRNFILQGTLENGFTLTV 364 (626)
T ss_pred eEEEEEecCccEee-cCccceEEecc-ccccccccccCchhcCCeeEEecCC--C-cEEEeeccceEEEeeecCCceEEE
Confidence 99999999997655 99999999999 33333433332 2256787776432 2 266777777777777776655444
Q ss_pred eecccccceEEEEEecCCCEEEEEcCCCcEEEEEeeCCCCCceeEEeccCCCCCCeeEEEecCCCEEEEEECCCCEEEEE
Q 003579 263 IREAHDNAIISLHFFANEPVLMSASADNSIKMWIFDTTDGDPRLLRFRSGHSAPPLCIRFYANGRHILSAGQDRAFRLFS 342 (809)
Q Consensus 263 ~~~~h~~~V~~l~~~~~~~~l~s~s~d~~i~vw~~~~~~~~~~~~~~~~~h~~~v~~i~~~~~~~~l~s~~~dg~i~~wd 342 (809)
. +|......++..|+.+++++++.|+.+++|+ .. ++.-. ..-..+..|+.|+|.| .++.|...|...+.|
T Consensus 365 ~--gh~delwgla~hps~~q~~T~gqdk~v~lW~--~~----k~~wt-~~~~d~~~~~~fhpsg-~va~Gt~~G~w~V~d 434 (626)
T KOG2106|consen 365 Q--GHGDELWGLATHPSKNQLLTCGQDKHVRLWN--DH----KLEWT-KIIEDPAECADFHPSG-VVAVGTATGRWFVLD 434 (626)
T ss_pred E--ecccceeeEEcCCChhheeeccCcceEEEcc--CC----ceeEE-EEecCceeEeeccCcc-eEEEeeccceEEEEe
Confidence 3 7999999999999999999999999999997 21 22222 2345688999999999 999999999999988
Q ss_pred eeecccceecchhhHHHHHhhccchhhhhccCceeEEeeccccccccceeEEeecCCceEEEEEeeeeeecceeeecCCC
Q 003579 343 VIQDQQSRELSQRHVAKRARKLKMKEEELKLKPVIAFDCAEIRERDWCNVVTCHMDTAQAYVWRLQNFVLGEHILRPCPE 422 (809)
Q Consensus 343 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~ 422 (809)
..+...... |.
T Consensus 435 ~e~~~lv~~--------------------------------------------~~------------------------- 445 (626)
T KOG2106|consen 435 TETQDLVTI--------------------------------------------HT------------------------- 445 (626)
T ss_pred cccceeEEE--------------------------------------------Ee-------------------------
Confidence 765322111 10
Q ss_pred CCCCeEEEEEcCCCCEEEEEeCCCcEEEEECCCCcee-eeeeCcccccccCccccEEEEEEcCCCCEEEEEeCcCeEEEE
Q 003579 423 NPTAVKACTISACGNFAVLGTAGGWIERFNLQSGISR-GSYLDMSERSNYAHNGEVVGVACDSTNTLMISAGYHGDIKVW 501 (809)
Q Consensus 423 ~~~~v~~v~~s~~g~~l~~g~~~g~i~i~~~~~~~~~-~~~~~~~~~~~~~h~~~v~~l~~~~~~~~l~s~~~dg~i~iw 501 (809)
...+++++.++|+|.++++|+.|+.|++|.+..+... .... ..|..+|+.+.|++|++++.+-+.|-.|-+|
T Consensus 446 d~~~ls~v~ysp~G~~lAvgs~d~~iyiy~Vs~~g~~y~r~~-------k~~gs~ithLDwS~Ds~~~~~~S~d~eiLyW 518 (626)
T KOG2106|consen 446 DNEQLSVVRYSPDGAFLAVGSHDNHIYIYRVSANGRKYSRVG-------KCSGSPITHLDWSSDSQFLVSNSGDYEILYW 518 (626)
T ss_pred cCCceEEEEEcCCCCEEEEecCCCeEEEEEECCCCcEEEEee-------eecCceeEEeeecCCCceEEeccCceEEEEE
Confidence 1378999999999999999999999999998654433 3332 2455899999999999999999999999999
Q ss_pred ECCCCceeeee---e----------------cCCCeEEEEEeeCCCEEEEEeCCCeEEEEEcCCC---eEEEEEecCCCC
Q 003579 502 DFKGRDLKSRW---E----------------VGCSLVKIVYHRVNGLLATVADDLVIRLFDVVAL---RMVRKFEGHTDR 559 (809)
Q Consensus 502 d~~~~~~~~~~---~----------------~~~~i~~~~~s~~~~~la~~~~d~~I~v~d~~~~---~~~~~~~~h~~~ 559 (809)
.-...+..... + ....+..++-+.+.+++|+|.+.|.|++|...-- ....++.+|.+.
T Consensus 519 ~~~~~~~~ts~kDvkW~t~~c~lGF~v~g~s~~t~i~a~~rs~~~~~lA~gdd~g~v~lf~yPc~s~rA~~he~~ghs~~ 598 (626)
T KOG2106|consen 519 KPSECKQITSVKDVKWATYTCTLGFEVFGGSDGTDINAVARSHCEKLLASGDDFGKVHLFSYPCSSPRAPSHEYGGHSSH 598 (626)
T ss_pred ccccCcccceecceeeeeeEEEEEEEEecccCCchHHHhhhhhhhhhhhccccCceEEEEccccCCCcccceeeccccce
Confidence 43332221111 1 1244555666777889999999999999987543 345677899999
Q ss_pred eeeEEECCCCCEEEEEeCCCeEEEEEc
Q 003579 560 ITDFCFSEDGKWLLSSGMDGSLRIWDV 586 (809)
Q Consensus 560 I~~l~fspdg~~l~s~s~D~~I~vwd~ 586 (809)
|++++|+.+...+++.+.|.+|..|++
T Consensus 599 vt~V~Fl~~d~~li~tg~D~Si~qW~l 625 (626)
T KOG2106|consen 599 VTNVAFLCKDSHLISTGKDTSIMQWRL 625 (626)
T ss_pred eEEEEEeeCCceEEecCCCceEEEEEe
Confidence 999999998888888889999999986
No 39
>KOG0284 consensus Polyadenylation factor I complex, subunit PFS2 [RNA processing and modification]
Probab=100.00 E-value=1e-35 Score=286.20 Aligned_cols=279 Identities=21% Similarity=0.386 Sum_probs=244.5
Q ss_pred CCcEEEEEEecCCCCEEEEEcCCCcEEEEECCCceeeeeeecccccceEEEEEecCCCEEEEEcCCCcEEEEEeeCCCCC
Q 003579 224 RGAVTALAFSSDGQPLLASGASSGVISIWNLEKRRLQSVIREAHDNAIISLHFFANEPVLMSASADNSIKMWIFDTTDGD 303 (809)
Q Consensus 224 ~~~V~~l~fs~dg~~~lasg~~dg~I~iwdl~~~~~~~~~~~~h~~~V~~l~~~~~~~~l~s~s~d~~i~vw~~~~~~~~ 303 (809)
+.+|..+.|.|+|+ .|++|+..|.+.+|+...-.....++ +|+++|+++.|++++.++++|+.+|.|++|+.+...
T Consensus 96 kc~V~~v~WtPeGR-RLltgs~SGEFtLWNg~~fnFEtilQ-aHDs~Vr~m~ws~~g~wmiSgD~gG~iKyWqpnmnn-- 171 (464)
T KOG0284|consen 96 KCPVNVVRWTPEGR-RLLTGSQSGEFTLWNGTSFNFETILQ-AHDSPVRTMKWSHNGTWMISGDKGGMIKYWQPNMNN-- 171 (464)
T ss_pred ccceeeEEEcCCCc-eeEeecccccEEEecCceeeHHHHhh-hhcccceeEEEccCCCEEEEcCCCceEEecccchhh--
Confidence 56899999999999 88999999999999986555555555 999999999999999999999999999999766542
Q ss_pred ceeEEeccC-CCCCCeeEEEecCCCEEEEEECCCCEEEEEeeecccceecchhhHHHHHhhccchhhhhccCceeEEeec
Q 003579 304 PRLLRFRSG-HSAPPLCIRFYANGRHILSAGQDRAFRLFSVIQDQQSRELSQRHVAKRARKLKMKEEELKLKPVIAFDCA 382 (809)
Q Consensus 304 ~~~~~~~~~-h~~~v~~i~~~~~~~~l~s~~~dg~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~ 382 (809)
++...+ |...|++++|+|+...+++|+.||+|++||....++...
T Consensus 172 ---Vk~~~ahh~eaIRdlafSpnDskF~t~SdDg~ikiWdf~~~kee~v------------------------------- 217 (464)
T KOG0284|consen 172 ---VKIIQAHHAEAIRDLAFSPNDSKFLTCSDDGTIKIWDFRMPKEERV------------------------------- 217 (464)
T ss_pred ---hHHhhHhhhhhhheeccCCCCceeEEecCCCeEEEEeccCCchhhe-------------------------------
Confidence 333344 458999999999888999999999999999765433211
Q ss_pred cccccccceeEEeecCCceEEEEEeeeeeecceeeecCCCCCCCeEEEEEcCCCCEEEEEeCCCcEEEEECCCCceeeee
Q 003579 383 EIRERDWCNVVTCHMDTAQAYVWRLQNFVLGEHILRPCPENPTAVKACTISACGNFAVLGTAGGWIERFNLQSGISRGSY 462 (809)
Q Consensus 383 ~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~v~~v~~s~~g~~l~~g~~~g~i~i~~~~~~~~~~~~ 462 (809)
T Consensus 218 -------------------------------------------------------------------------------- 217 (464)
T KOG0284|consen 218 -------------------------------------------------------------------------------- 217 (464)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred eCcccccccCccccEEEEEEcCCCCEEEEEeCcCeEEEEECCCCceeeeeecC-CCeEEEEEeeCCCEEEEEeCCCeEEE
Q 003579 463 LDMSERSNYAHNGEVVGVACDSTNTLMISAGYHGDIKVWDFKGRDLKSRWEVG-CSLVKIVYHRVNGLLATVADDLVIRL 541 (809)
Q Consensus 463 ~~~~~~~~~~h~~~v~~l~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~-~~i~~~~~s~~~~~la~~~~d~~I~v 541 (809)
+.+|.-.|.+++|+|...+++++|.|..|++||.+++.++.++..+ ..|..+.|++++.+|++++.|..+++
T Consensus 218 -------L~GHgwdVksvdWHP~kgLiasgskDnlVKlWDprSg~cl~tlh~HKntVl~~~f~~n~N~Llt~skD~~~kv 290 (464)
T KOG0284|consen 218 -------LRGHGWDVKSVDWHPTKGLIASGSKDNLVKLWDPRSGSCLATLHGHKNTVLAVKFNPNGNWLLTGSKDQSCKV 290 (464)
T ss_pred -------eccCCCCcceeccCCccceeEEccCCceeEeecCCCcchhhhhhhccceEEEEEEcCCCCeeEEccCCceEEE
Confidence 1289999999999999999999999999999999999999998766 88999999999999999999999999
Q ss_pred EEcCCCeEEEEEecCCCCeeeEEECCC-CCEEEEEeCCCeEEEEEcCCccEEEEee--eCcceEEEEEcCCCCeEEEEEe
Q 003579 542 FDVVALRMVRKFEGHTDRITDFCFSED-GKWLLSSGMDGSLRIWDVILARQIDAIH--VDVSITALSLSPNMDVLATAHV 618 (809)
Q Consensus 542 ~d~~~~~~~~~~~~h~~~I~~l~fspd-g~~l~s~s~D~~I~vwd~~~~~~i~~~~--~~~~v~~l~~spdg~~lat~~~ 618 (809)
+|+++.+.++++++|...|++++|+|- ..++.+|+.||.|..|.+...+++..+. +...|++++|+|-|..|++++.
T Consensus 291 ~DiR~mkEl~~~r~Hkkdv~~~~WhP~~~~lftsgg~Dgsvvh~~v~~~~p~~~i~~AHd~~iwsl~~hPlGhil~tgsn 370 (464)
T KOG0284|consen 291 FDIRTMKELFTYRGHKKDVTSLTWHPLNESLFTSGGSDGSVVHWVVGLEEPLGEIPPAHDGEIWSLAYHPLGHILATGSN 370 (464)
T ss_pred EehhHhHHHHHhhcchhhheeeccccccccceeeccCCCceEEEeccccccccCCCcccccceeeeeccccceeEeecCC
Confidence 999999999999999999999999994 4578899999999999999767666554 3445999999999999999999
Q ss_pred CCCeEEEeec
Q 003579 619 DQNGVYLWVN 628 (809)
Q Consensus 619 d~~~i~lW~~ 628 (809)
|. ++++|.-
T Consensus 371 d~-t~rfw~r 379 (464)
T KOG0284|consen 371 DR-TVRFWTR 379 (464)
T ss_pred Cc-ceeeecc
Confidence 98 6999974
No 40
>KOG0285 consensus Pleiotropic regulator 1 [RNA processing and modification]
Probab=100.00 E-value=3.3e-34 Score=270.84 Aligned_cols=281 Identities=20% Similarity=0.401 Sum_probs=253.8
Q ss_pred ccCCCcEEEEEEecCCCCEEEEEcCCCcEEEEECCCceeeeeeecccccceEEEEEecCCCEEEEEcCCCcEEEEEeeCC
Q 003579 221 HSMRGAVTALAFSSDGQPLLASGASSGVISIWNLEKRRLQSVIREAHDNAIISLHFFANEPVLMSASADNSIKMWIFDTT 300 (809)
Q Consensus 221 ~~~~~~V~~l~fs~dg~~~lasg~~dg~I~iwdl~~~~~~~~~~~~h~~~V~~l~~~~~~~~l~s~s~d~~i~vw~~~~~ 300 (809)
.+|.+.|.|+++.|.++ .+++|+.|++|.|||+.+|++..++. +|-..|..+++++-.++|++++.|+.|+.||+...
T Consensus 148 ~gHlgWVr~vavdP~n~-wf~tgs~DrtikIwDlatg~Lkltlt-Ghi~~vr~vavS~rHpYlFs~gedk~VKCwDLe~n 225 (460)
T KOG0285|consen 148 SGHLGWVRSVAVDPGNE-WFATGSADRTIKIWDLATGQLKLTLT-GHIETVRGVAVSKRHPYLFSAGEDKQVKCWDLEYN 225 (460)
T ss_pred hhccceEEEEeeCCCce-eEEecCCCceeEEEEcccCeEEEeec-chhheeeeeeecccCceEEEecCCCeeEEEechhh
Confidence 44589999999999887 99999999999999999999999998 99999999999999999999999999999999877
Q ss_pred CCCceeEEeccCCCCCCeeEEEecCCCEEEEEECCCCEEEEEeeecccceecchhhHHHHHhhccchhhhhccCceeEEe
Q 003579 301 DGDPRLLRFRSGHSAPPLCIRFYANGRHILSAGQDRAFRLFSVIQDQQSRELSQRHVAKRARKLKMKEEELKLKPVIAFD 380 (809)
Q Consensus 301 ~~~~~~~~~~~~h~~~v~~i~~~~~~~~l~s~~~dg~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~ 380 (809)
+.++...||-..|.|++.+|.-..|++|+.|.++++||+++..+...+
T Consensus 226 ----kvIR~YhGHlS~V~~L~lhPTldvl~t~grDst~RvWDiRtr~~V~~l---------------------------- 273 (460)
T KOG0285|consen 226 ----KVIRHYHGHLSGVYCLDLHPTLDVLVTGGRDSTIRVWDIRTRASVHVL---------------------------- 273 (460)
T ss_pred ----hhHHHhccccceeEEEeccccceeEEecCCcceEEEeeecccceEEEe----------------------------
Confidence 678888999999999999998889999999999999998765332211
Q ss_pred eccccccccceeEEeecCCceEEEEEeeeeeecceeeecCCCCCCCeEEEEEcCCCCEEEEEeCCCcEEEEECCCCceee
Q 003579 381 CAEIRERDWCNVVTCHMDTAQAYVWRLQNFVLGEHILRPCPENPTAVKACTISACGNFAVLGTAGGWIERFNLQSGISRG 460 (809)
Q Consensus 381 ~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~v~~v~~s~~g~~l~~g~~~g~i~i~~~~~~~~~~ 460 (809)
T Consensus 274 -------------------------------------------------------------------------------- 273 (460)
T KOG0285|consen 274 -------------------------------------------------------------------------------- 273 (460)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred eeeCcccccccCccccEEEEEEcCCCCEEEEEeCcCeEEEEECCCCceeeeeecC-CCeEEEEEeeCCCEEEEEeCCCeE
Q 003579 461 SYLDMSERSNYAHNGEVVGVACDSTNTLMISAGYHGDIKVWDFKGRDLKSRWEVG-CSLVKIVYHRVNGLLATVADDLVI 539 (809)
Q Consensus 461 ~~~~~~~~~~~~h~~~v~~l~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~-~~i~~~~~s~~~~~la~~~~d~~I 539 (809)
.+|..+|..+.+.|-+..+++|+.|++|++||+..++...++.++ ..+.+++.+|....+|+++.| .|
T Consensus 274 ----------~GH~~~V~~V~~~~~dpqvit~S~D~tvrlWDl~agkt~~tlt~hkksvral~lhP~e~~fASas~d-ni 342 (460)
T KOG0285|consen 274 ----------SGHTNPVASVMCQPTDPQVITGSHDSTVRLWDLRAGKTMITLTHHKKSVRALCLHPKENLFASASPD-NI 342 (460)
T ss_pred ----------cCCCCcceeEEeecCCCceEEecCCceEEEeeeccCceeEeeecccceeeEEecCCchhhhhccCCc-cc
Confidence 389999999999999999999999999999999999988888766 789999999999999999877 59
Q ss_pred EEEEcCCCeEEEEEecCCCCeeeEEECCCCCEEEEEeCCCeEEEEEcCCccEEEEee---------eCcceEEEEEcCCC
Q 003579 540 RLFDVVALRMVRKFEGHTDRITDFCFSEDGKWLLSSGMDGSLRIWDVILARQIDAIH---------VDVSITALSLSPNM 610 (809)
Q Consensus 540 ~v~d~~~~~~~~~~~~h~~~I~~l~fspdg~~l~s~s~D~~I~vwd~~~~~~i~~~~---------~~~~v~~l~~spdg 610 (809)
+-|++..+..+..+.+|..-|++++...|| ++++|+..|.+..||..+|...+... .+..|.+.+|...|
T Consensus 343 k~w~~p~g~f~~nlsgh~~iintl~~nsD~-v~~~G~dng~~~fwdwksg~nyQ~~~t~vqpGSl~sEagI~as~fDktg 421 (460)
T KOG0285|consen 343 KQWKLPEGEFLQNLSGHNAIINTLSVNSDG-VLVSGGDNGSIMFWDWKSGHNYQRGQTIVQPGSLESEAGIFASCFDKTG 421 (460)
T ss_pred eeccCCccchhhccccccceeeeeeeccCc-eEEEcCCceEEEEEecCcCcccccccccccCCccccccceeEEeecccC
Confidence 999999999999999999999999999887 78899999999999999987655442 23459999999999
Q ss_pred CeEEEEEeCCCeEEEeec
Q 003579 611 DVLATAHVDQNGVYLWVN 628 (809)
Q Consensus 611 ~~lat~~~d~~~i~lW~~ 628 (809)
..|+|+..|. +|++|.-
T Consensus 422 ~rlit~eadK-tIk~~ke 438 (460)
T KOG0285|consen 422 SRLITGEADK-TIKMYKE 438 (460)
T ss_pred ceEEeccCCc-ceEEEec
Confidence 9999999998 6999974
No 41
>KOG0295 consensus WD40 repeat-containing protein [Function unknown]
Probab=100.00 E-value=2e-34 Score=273.56 Aligned_cols=300 Identities=15% Similarity=0.262 Sum_probs=262.8
Q ss_pred EEcCCccccEEEEeCCCCCCEEEEEeCCCeEEEEeCCCCceEEEEcCCCCCEEEEEEcCCCCEEEEEeCCCeEEEEEeeC
Q 003579 133 VKLDDKFTPTCIMHPDTYLNKVIVGSQEGSLQLWNISTKKKLYEFKGWGSSISSCVSSPALDVVAVGCSDGKIHVHNVRY 212 (809)
Q Consensus 133 ~~~~~~~~~~~~~~p~~~~~~l~~~~~dg~i~lwd~~~~~~~~~~~~~~~~I~~l~~sp~~~~la~g~~dg~i~iwd~~~ 212 (809)
+..+...+....+||+- ..+++++.|++|++||..+|++...+++|...+..++|+..|+++|+++.|-.+.+||..+
T Consensus 104 l~g~r~~vt~v~~hp~~--~~v~~as~d~tikv~D~~tg~~e~~LrGHt~sv~di~~~a~Gk~l~tcSsDl~~~LWd~~~ 181 (406)
T KOG0295|consen 104 LAGHRSSVTRVIFHPSE--ALVVSASEDATIKVFDTETGELERSLRGHTDSVFDISFDASGKYLATCSSDLSAKLWDFDT 181 (406)
T ss_pred hhccccceeeeeeccCc--eEEEEecCCceEEEEEccchhhhhhhhccccceeEEEEecCccEEEecCCccchhheeHHH
Confidence 34456667788899998 6788999999999999999999999999999999999999999999999999999999986
Q ss_pred -CeEEEEEeccCCCcEEEEEEecCCCCEEEEEcCCCcEEEEECCCceeeeeeecccccceEEEEEecCCCEEEEEcCCCc
Q 003579 213 -DEELVTFTHSMRGAVTALAFSSDGQPLLASGASSGVISIWNLEKRRLQSVIREAHDNAIISLHFFANEPVLMSASADNS 291 (809)
Q Consensus 213 -~~~~~~~~~~~~~~V~~l~fs~dg~~~lasg~~dg~I~iwdl~~~~~~~~~~~~h~~~V~~l~~~~~~~~l~s~s~d~~ 291 (809)
.+++....++ ...|.+++|.|.|. ++++++.|.+|+.|++.++-++.++. +|...|..+..+.||.++++++.|.+
T Consensus 182 ~~~c~ks~~gh-~h~vS~V~f~P~gd-~ilS~srD~tik~We~~tg~cv~t~~-~h~ewvr~v~v~~DGti~As~s~dqt 258 (406)
T KOG0295|consen 182 FFRCIKSLIGH-EHGVSSVFFLPLGD-HILSCSRDNTIKAWECDTGYCVKTFP-GHSEWVRMVRVNQDGTIIASCSNDQT 258 (406)
T ss_pred HHHHHHHhcCc-ccceeeEEEEecCC-eeeecccccceeEEecccceeEEecc-CchHhEEEEEecCCeeEEEecCCCce
Confidence 3455555544 78899999999998 89999999999999999999999999 99999999999999999999999999
Q ss_pred EEEEEeeCCCCCceeEEeccCCCCCCeeEEEecCCCEEEEEECCCCEEEEEeeecccceecchhhHHHHHhhccchhhhh
Q 003579 292 IKMWIFDTTDGDPRLLRFRSGHSAPPLCIRFYANGRHILSAGQDRAFRLFSVIQDQQSRELSQRHVAKRARKLKMKEEEL 371 (809)
Q Consensus 292 i~vw~~~~~~~~~~~~~~~~~h~~~v~~i~~~~~~~~l~s~~~dg~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 371 (809)
+++|-+.+. .+...+.+|..+|.|++|.|... ++...+.+
T Consensus 259 l~vW~~~t~----~~k~~lR~hEh~vEci~wap~~~--~~~i~~at---------------------------------- 298 (406)
T KOG0295|consen 259 LRVWVVATK----QCKAELREHEHPVECIAWAPESS--YPSISEAT---------------------------------- 298 (406)
T ss_pred EEEEEeccc----hhhhhhhccccceEEEEeccccc--Ccchhhcc----------------------------------
Confidence 999988776 45556679999999999998642 11110000
Q ss_pred ccCceeEEeeccccccccceeEEeecCCceEEEEEeeeeeecceeeecCCCCCCCeEEEEEcCCCCEEEEEeCCCcEEEE
Q 003579 372 KLKPVIAFDCAEIRERDWCNVVTCHMDTAQAYVWRLQNFVLGEHILRPCPENPTAVKACTISACGNFAVLGTAGGWIERF 451 (809)
Q Consensus 372 ~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~v~~v~~s~~g~~l~~g~~~g~i~i~ 451 (809)
+. . ..|.++.+++.|++|++|
T Consensus 299 --------------------------------------------------~~-~--------~~~~~l~s~SrDktIk~w 319 (406)
T KOG0295|consen 299 --------------------------------------------------GS-T--------NGGQVLGSGSRDKTIKIW 319 (406)
T ss_pred --------------------------------------------------CC-C--------CCccEEEeecccceEEEE
Confidence 00 0 036789999999999999
Q ss_pred ECCCCceeeeeeCcccccccCccccEEEEEEcCCCCEEEEEeCcCeEEEEECCCCceeeeeecC-CCeEEEEEeeCCCEE
Q 003579 452 NLQSGISRGSYLDMSERSNYAHNGEVVGVACDSTNTLMISAGYHGDIKVWDFKGRDLKSRWEVG-CSLVKIVYHRVNGLL 530 (809)
Q Consensus 452 ~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~-~~i~~~~~s~~~~~l 530 (809)
|+++|..+.++. +|...|.+++|+|.|++|+++..|+++++||++++++...++.+ .-++++.|+.+..++
T Consensus 320 dv~tg~cL~tL~--------ghdnwVr~~af~p~Gkyi~ScaDDktlrvwdl~~~~cmk~~~ah~hfvt~lDfh~~~p~V 391 (406)
T KOG0295|consen 320 DVSTGMCLFTLV--------GHDNWVRGVAFSPGGKYILSCADDKTLRVWDLKNLQCMKTLEAHEHFVTSLDFHKTAPYV 391 (406)
T ss_pred eccCCeEEEEEe--------cccceeeeeEEcCCCeEEEEEecCCcEEEEEeccceeeeccCCCcceeEEEecCCCCceE
Confidence 999999999887 99999999999999999999999999999999999999998866 788999999999999
Q ss_pred EEEeCCCeEEEEEc
Q 003579 531 ATVADDLVIRLFDV 544 (809)
Q Consensus 531 a~~~~d~~I~v~d~ 544 (809)
++|+-|..+++|..
T Consensus 392 vTGsVdqt~KvwEc 405 (406)
T KOG0295|consen 392 VTGSVDQTVKVWEC 405 (406)
T ss_pred Eeccccceeeeeec
Confidence 99999999999964
No 42
>KOG0292 consensus Vesicle coat complex COPI, alpha subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=100.00 E-value=1.6e-32 Score=287.43 Aligned_cols=408 Identities=17% Similarity=0.275 Sum_probs=312.4
Q ss_pred CccccEEEEeCCCCCCEEEEEeCCCeEEEEeCCCCceEEEEcCCCCCEEEEEEcCCCCEEEEEeCCCeEEEEEeeCCeEE
Q 003579 137 DKFTPTCIMHPDTYLNKVIVGSQEGSLQLWNISTKKKLYEFKGWGSSISSCVSSPALDVVAVGCSDGKIHVHNVRYDEEL 216 (809)
Q Consensus 137 ~~~~~~~~~~p~~~~~~l~~~~~dg~i~lwd~~~~~~~~~~~~~~~~I~~l~~sp~~~~la~g~~dg~i~iwd~~~~~~~ 216 (809)
...+-...|||.. ..|+++-..|.|++||.+-+.++..|..|.++|..++|+|...++++|+.|-.|++|+.++.+++
T Consensus 9 SsRvKglsFHP~r--PwILtslHsG~IQlWDYRM~tli~rFdeHdGpVRgv~FH~~qplFVSGGDDykIkVWnYk~rrcl 86 (1202)
T KOG0292|consen 9 SSRVKGLSFHPKR--PWILTSLHSGVIQLWDYRMGTLIDRFDEHDGPVRGVDFHPTQPLFVSGGDDYKIKVWNYKTRRCL 86 (1202)
T ss_pred cccccceecCCCC--CEEEEeecCceeeeehhhhhhHHhhhhccCCccceeeecCCCCeEEecCCccEEEEEecccceeh
Confidence 3445677899999 89999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EEEeccCCCcEEEEEEecCCCCEEEEEcCCCcEEEEECCCceeeeeeecccccceEEEEEecCCCEEEEEcCCCcEEEEE
Q 003579 217 VTFTHSMRGAVTALAFSSDGQPLLASGASSGVISIWNLEKRRLQSVIREAHDNAIISLHFFANEPVLMSASADNSIKMWI 296 (809)
Q Consensus 217 ~~~~~~~~~~V~~l~fs~dg~~~lasg~~dg~I~iwdl~~~~~~~~~~~~h~~~V~~l~~~~~~~~l~s~s~d~~i~vw~ 296 (809)
.++.+| -+.|..+.|++.-. .++++|.|.+|+|||..+++++..+. +|...|.|.+|+|...+++++|-|.+||+||
T Consensus 87 ftL~GH-lDYVRt~~FHheyP-WIlSASDDQTIrIWNwqsr~~iavlt-GHnHYVMcAqFhptEDlIVSaSLDQTVRVWD 163 (1202)
T KOG0292|consen 87 FTLLGH-LDYVRTVFFHHEYP-WILSASDDQTIRIWNWQSRKCIAVLT-GHNHYVMCAQFHPTEDLIVSASLDQTVRVWD 163 (1202)
T ss_pred hhhccc-cceeEEeeccCCCc-eEEEccCCCeEEEEeccCCceEEEEe-cCceEEEeeccCCccceEEEecccceEEEEe
Confidence 999987 88999999999887 89999999999999999999999999 9999999999999999999999999999999
Q ss_pred eeCCC------C-------------------CceeEEeccCCCCCCeeEEEecCCCEEEEEECCCCEEEEEeeeccccee
Q 003579 297 FDTTD------G-------------------DPRLLRFRSGHSAPPLCIRFYANGRHILSAGQDRAFRLFSVIQDQQSRE 351 (809)
Q Consensus 297 ~~~~~------~-------------------~~~~~~~~~~h~~~v~~i~~~~~~~~l~s~~~dg~i~~wd~~~~~~~~~ 351 (809)
+..-. + .......+.||...|+-++|+|.-..+++|+.|+.|++|.....+
T Consensus 164 isGLRkk~~~pg~~e~~~~~~~~~~dLfg~~DaVVK~VLEGHDRGVNwaAfhpTlpliVSG~DDRqVKlWrmnetK---- 239 (1202)
T KOG0292|consen 164 ISGLRKKNKAPGSLEDQMRGQQGNSDLFGQTDAVVKHVLEGHDRGVNWAAFHPTLPLIVSGADDRQVKLWRMNETK---- 239 (1202)
T ss_pred ecchhccCCCCCCchhhhhccccchhhcCCcCeeeeeeecccccccceEEecCCcceEEecCCcceeeEEEecccc----
Confidence 85320 0 122345678999999999999999999999999999999864321
Q ss_pred cchhhHHHHHhhccchhhhhccCceeEEeeccccccccceeEEeecCCceEEEEEeeeeeecceeeecCCCCCCCeEEEE
Q 003579 352 LSQRHVAKRARKLKMKEEELKLKPVIAFDCAEIRERDWCNVVTCHMDTAQAYVWRLQNFVLGEHILRPCPENPTAVKACT 431 (809)
Q Consensus 352 ~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~v~~v~ 431 (809)
.+...++.+|...|+++-
T Consensus 240 --------------------------------------------------------------aWEvDtcrgH~nnVssvl 257 (1202)
T KOG0292|consen 240 --------------------------------------------------------------AWEVDTCRGHYNNVSSVL 257 (1202)
T ss_pred --------------------------------------------------------------ceeehhhhcccCCcceEE
Confidence 233445568889999999
Q ss_pred EcCCCCEEEEEeCCCcEEEEECCCCceeeeeeCcccccccCccccEEEEEEcCCCCEEEEEeCcC---------------
Q 003579 432 ISACGNFAVLGTAGGWIERFNLQSGISRGSYLDMSERSNYAHNGEVVGVACDSTNTLMISAGYHG--------------- 496 (809)
Q Consensus 432 ~s~~g~~l~~g~~~g~i~i~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~l~s~~~dg--------------- 496 (809)
|+|..+.+++.+.|+.|++||+........+. ......+.++.+|..++++.|-..|
T Consensus 258 fhp~q~lIlSnsEDksirVwDm~kRt~v~tfr--------rendRFW~laahP~lNLfAAgHDsGm~VFkleRErpa~~v 329 (1202)
T KOG0292|consen 258 FHPHQDLILSNSEDKSIRVWDMTKRTSVQTFR--------RENDRFWILAAHPELNLFAAGHDSGMIVFKLERERPAYAV 329 (1202)
T ss_pred ecCccceeEecCCCccEEEEecccccceeeee--------ccCCeEEEEEecCCcceeeeecCCceEEEEEcccCceEEE
Confidence 99999999999999999999999999988886 4556778888888877666544333
Q ss_pred -----------eEEEEECCCCceee--eeecC----CCeEEEEEeeCCCEEEEEe--CCCeEEEEEcCCC----------
Q 003579 497 -----------DIKVWDFKGRDLKS--RWEVG----CSLVKIVYHRVNGLLATVA--DDLVIRLFDVVAL---------- 547 (809)
Q Consensus 497 -----------~i~iwd~~~~~~~~--~~~~~----~~i~~~~~s~~~~~la~~~--~d~~I~v~d~~~~---------- 547 (809)
.|+.+|+.+.+-.. .+... .+..++.|+|..+.+..++ +++.--++.+...
T Consensus 330 ~~n~LfYvkd~~i~~~d~~t~~d~~v~~lr~~g~~~~~~~smsYNpae~~vlics~~~n~~y~L~~ipk~~~~~~~~~~~ 409 (1202)
T KOG0292|consen 330 NGNGLFYVKDRFIRSYDLRTQKDTAVASLRRPGTLWQPPRSLSYNPAENAVLICSNLDNGEYELVQIPKDSDGVSDGKDV 409 (1202)
T ss_pred cCCEEEEEccceEEeeeccccccceeEeccCCCcccCCcceeeeccccCeEEEEeccCCCeEEEEEecCcccccCCchhh
Confidence 23333433322211 12221 5678899999666544442 2343334433211
Q ss_pred -------------------------eEEEEEec-------CCCCeeeEEECCCCCEEEEEeCCCeEEEEEcCCccEEEEe
Q 003579 548 -------------------------RMVRKFEG-------HTDRITDFCFSEDGKWLLSSGMDGSLRIWDVILARQIDAI 595 (809)
Q Consensus 548 -------------------------~~~~~~~~-------h~~~I~~l~fspdg~~l~s~s~D~~I~vwd~~~~~~i~~~ 595 (809)
-.++.+.. -...+..|-+..+|.+|+.. ...|.++|++..+.+..+
T Consensus 410 ~k~tG~~a~fvarNrfavl~k~~~~v~ik~l~N~vtkkl~~~~~~~~IF~ag~g~lll~~--~~~v~lfdvQq~~~~~si 487 (1202)
T KOG0292|consen 410 KKGTGEGALFVARNRFAVLDKSNEQVVIKNLKNKVTKKLLLPESTDDIFYAGTGNLLLRS--PDSVTLFDVQQKKKVGSI 487 (1202)
T ss_pred hcCCCCceEEEEecceEEEEecCcceEEecccchhhhcccCcccccceeeccCccEEEEc--CCeEEEEEeecceEEEEE
Confidence 00011110 00123344455566555432 346899999988888777
Q ss_pred eeCcceEEEEEcCCCCeEEEEEeCCCeEEEeec
Q 003579 596 HVDVSITALSLSPNMDVLATAHVDQNGVYLWVN 628 (809)
Q Consensus 596 ~~~~~v~~l~~spdg~~lat~~~d~~~i~lW~~ 628 (809)
.. +.|.-+.||+|+.++|--+.. +|.|.+-
T Consensus 488 ~~-s~vkyvvws~dm~~vAll~Kh--~i~i~~k 517 (1202)
T KOG0292|consen 488 KV-SKVKYVVWSNDMSRVALLSKH--TITIADK 517 (1202)
T ss_pred ec-CceeEEEEcCccchhhhcccc--eEEEEec
Confidence 65 358889999998877766544 3555543
No 43
>KOG0293 consensus WD40 repeat-containing protein [Function unknown]
Probab=100.00 E-value=2.2e-34 Score=276.92 Aligned_cols=291 Identities=21% Similarity=0.321 Sum_probs=252.3
Q ss_pred eeeecccccceEEEEEecCCCEEEEEcCCCcEEEEEeeCCCCCceeEEeccCCCCCCeeEEEecCCCEEEEEECCCCEEE
Q 003579 261 SVIREAHDNAIISLHFFANEPVLMSASADNSIKMWIFDTTDGDPRLLRFRSGHSAPPLCIRFYANGRHILSAGQDRAFRL 340 (809)
Q Consensus 261 ~~~~~~h~~~V~~l~~~~~~~~l~s~s~d~~i~vw~~~~~~~~~~~~~~~~~h~~~v~~i~~~~~~~~l~s~~~dg~i~~ 340 (809)
+.+. .|...|.-+.|+++|++||+++.|.+..+|.+..... .++.+++.+|..+|..+.|+||.++|++|+.|..+++
T Consensus 218 qil~-~htdEVWfl~FS~nGkyLAsaSkD~Taiiw~v~~d~~-~kl~~tlvgh~~~V~yi~wSPDdryLlaCg~~e~~~l 295 (519)
T KOG0293|consen 218 QILQ-DHTDEVWFLQFSHNGKYLASASKDSTAIIWIVVYDVH-FKLKKTLVGHSQPVSYIMWSPDDRYLLACGFDEVLSL 295 (519)
T ss_pred hhHh-hCCCcEEEEEEcCCCeeEeeccCCceEEEEEEecCcc-eeeeeeeecccCceEEEEECCCCCeEEecCchHheee
Confidence 3444 8999999999999999999999999999999876654 5778899999999999999999999999999999999
Q ss_pred EEeeecccceecchhhHHHHHhhccchhhhhccCceeEEeeccccccccceeEEeecCCceEEEEEeeeeeecceeeecC
Q 003579 341 FSVIQDQQSRELSQRHVAKRARKLKMKEEELKLKPVIAFDCAEIRERDWCNVVTCHMDTAQAYVWRLQNFVLGEHILRPC 420 (809)
Q Consensus 341 wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~ 420 (809)
||+.++.....+..
T Consensus 296 wDv~tgd~~~~y~~------------------------------------------------------------------ 309 (519)
T KOG0293|consen 296 WDVDTGDLRHLYPS------------------------------------------------------------------ 309 (519)
T ss_pred ccCCcchhhhhccc------------------------------------------------------------------
Confidence 99987765443322
Q ss_pred CCCCCCeEEEEEcCCCCEEEEEeCCCcEEEEECCCCceeeeeeCcccccccCccccEEEEEEcCCCCEEEEEeCcCeEEE
Q 003579 421 PENPTAVKACTISACGNFAVLGTAGGWIERFNLQSGISRGSYLDMSERSNYAHNGEVVGVACDSTNTLMISAGYHGDIKV 500 (809)
Q Consensus 421 ~~~~~~v~~v~~s~~g~~l~~g~~~g~i~i~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~l~s~~~dg~i~i 500 (809)
++...+.+++|.|||..+++|+.|+.+..|++..... .... .-....|.++++.+||+++++.+.|..|++
T Consensus 310 -~~~~S~~sc~W~pDg~~~V~Gs~dr~i~~wdlDgn~~-~~W~-------gvr~~~v~dlait~Dgk~vl~v~~d~~i~l 380 (519)
T KOG0293|consen 310 -GLGFSVSSCAWCPDGFRFVTGSPDRTIIMWDLDGNIL-GNWE-------GVRDPKVHDLAITYDGKYVLLVTVDKKIRL 380 (519)
T ss_pred -CcCCCcceeEEccCCceeEecCCCCcEEEecCCcchh-hccc-------ccccceeEEEEEcCCCcEEEEEecccceee
Confidence 1236789999999999999999999999999976543 2222 123356999999999999999999999999
Q ss_pred EECCCCceeeeeecCCCeEEEEEeeCCCEEEEEeCCCeEEEEEcCCCeEEEEEecCCCC--eeeEEECC-CCCEEEEEeC
Q 003579 501 WDFKGRDLKSRWEVGCSLVKIVYHRVNGLLATVADDLVIRLFDVVALRMVRKFEGHTDR--ITDFCFSE-DGKWLLSSGM 577 (809)
Q Consensus 501 wd~~~~~~~~~~~~~~~i~~~~~s~~~~~la~~~~d~~I~v~d~~~~~~~~~~~~h~~~--I~~l~fsp-dg~~l~s~s~ 577 (809)
++..+...+..+..+.+|++++.|.+++++.+.-.+..+++||++..+.++++.||... |-.-||-. +..++++||+
T Consensus 381 ~~~e~~~dr~lise~~~its~~iS~d~k~~LvnL~~qei~LWDl~e~~lv~kY~Ghkq~~fiIrSCFgg~~~~fiaSGSE 460 (519)
T KOG0293|consen 381 YNREARVDRGLISEEQPITSFSISKDGKLALVNLQDQEIHLWDLEENKLVRKYFGHKQGHFIIRSCFGGGNDKFIASGSE 460 (519)
T ss_pred echhhhhhhccccccCceeEEEEcCCCcEEEEEcccCeeEEeecchhhHHHHhhcccccceEEEeccCCCCcceEEecCC
Confidence 99998888888888899999999999999999999999999999999999999999854 33445654 5589999999
Q ss_pred CCeEEEEEcCCccEEEEeeeCcc-eEEEEEcCCC-CeEEEEEeCCCeEEEeecC
Q 003579 578 DGSLRIWDVILARQIDAIHVDVS-ITALSLSPNM-DVLATAHVDQNGVYLWVNR 629 (809)
Q Consensus 578 D~~I~vwd~~~~~~i~~~~~~~~-v~~l~~spdg-~~lat~~~d~~~i~lW~~~ 629 (809)
|+.|+||+..+|+++..+.+|.. |++|+|+|.. .++|+|+.|+ +|+||.+.
T Consensus 461 D~kvyIWhr~sgkll~~LsGHs~~vNcVswNP~~p~m~ASasDDg-tIRIWg~~ 513 (519)
T KOG0293|consen 461 DSKVYIWHRISGKLLAVLSGHSKTVNCVSWNPADPEMFASASDDG-TIRIWGPS 513 (519)
T ss_pred CceEEEEEccCCceeEeecCCcceeeEEecCCCCHHHhhccCCCC-eEEEecCC
Confidence 99999999999999999999886 9999999954 6788888888 79999875
No 44
>KOG0265 consensus U5 snRNP-specific protein-like factor and related proteins [RNA processing and modification]
Probab=100.00 E-value=2.4e-33 Score=259.80 Aligned_cols=282 Identities=18% Similarity=0.337 Sum_probs=247.4
Q ss_pred ccCCCcEEEEEEecCCCCEEEEEcCCCcEEEEECCCc-eeeeeeecccccceEEEEEecCCCEEEEEcCCCcEEEEEeeC
Q 003579 221 HSMRGAVTALAFSSDGQPLLASGASSGVISIWNLEKR-RLQSVIREAHDNAIISLHFFANEPVLMSASADNSIKMWIFDT 299 (809)
Q Consensus 221 ~~~~~~V~~l~fs~dg~~~lasg~~dg~I~iwdl~~~-~~~~~~~~~h~~~V~~l~~~~~~~~l~s~s~d~~i~vw~~~~ 299 (809)
.+|++.|..+.|+|+|. ++|+|+.|..|.+|+.... +....+. +|.+.|..+.|.+|+..++++|.|.+++.||..+
T Consensus 44 ~gh~geI~~~~F~P~gs-~~aSgG~Dr~I~LWnv~gdceN~~~lk-gHsgAVM~l~~~~d~s~i~S~gtDk~v~~wD~~t 121 (338)
T KOG0265|consen 44 PGHKGEIYTIKFHPDGS-CFASGGSDRAIVLWNVYGDCENFWVLK-GHSGAVMELHGMRDGSHILSCGTDKTVRGWDAET 121 (338)
T ss_pred CCCcceEEEEEECCCCC-eEeecCCcceEEEEeccccccceeeec-cccceeEeeeeccCCCEEEEecCCceEEEEeccc
Confidence 45699999999999999 9999999999999996544 4555666 9999999999999999999999999999999988
Q ss_pred CCCCceeEEeccCCCCCCeeEEEecCC-CEEEEEECCCCEEEEEeeecccceecchhhHHHHHhhccchhhhhccCceeE
Q 003579 300 TDGDPRLLRFRSGHSAPPLCIRFYANG-RHILSAGQDRAFRLFSVIQDQQSRELSQRHVAKRARKLKMKEEELKLKPVIA 378 (809)
Q Consensus 300 ~~~~~~~~~~~~~h~~~v~~i~~~~~~-~~l~s~~~dg~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~ 378 (809)
+ +..+...+|..-|+.+.-..-| ..+.+++.|+++++||+++....+.+.
T Consensus 122 G----~~~rk~k~h~~~vNs~~p~rrg~~lv~SgsdD~t~kl~D~R~k~~~~t~~------------------------- 172 (338)
T KOG0265|consen 122 G----KRIRKHKGHTSFVNSLDPSRRGPQLVCSGSDDGTLKLWDIRKKEAIKTFE------------------------- 172 (338)
T ss_pred c----eeeehhccccceeeecCccccCCeEEEecCCCceEEEEeecccchhhccc-------------------------
Confidence 7 6778888999999998855544 456688899999999998766554432
Q ss_pred EeeccccccccceeEEeecCCceEEEEEeeeeeecceeeecCCCCCCCeEEEEEcCCCCEEEEEeCCCcEEEEECCCCce
Q 003579 379 FDCAEIRERDWCNVVTCHMDTAQAYVWRLQNFVLGEHILRPCPENPTAVKACTISACGNFAVLGTAGGWIERFNLQSGIS 458 (809)
Q Consensus 379 ~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~v~~v~~s~~g~~l~~g~~~g~i~i~~~~~~~~ 458 (809)
.+.++++++|...+..+.+|.-|+.|++||+..+..
T Consensus 173 --------------------------------------------~kyqltAv~f~d~s~qv~sggIdn~ikvWd~r~~d~ 208 (338)
T KOG0265|consen 173 --------------------------------------------NKYQLTAVGFKDTSDQVISGGIDNDIKVWDLRKNDG 208 (338)
T ss_pred --------------------------------------------cceeEEEEEecccccceeeccccCceeeeccccCcc
Confidence 237899999999999999999999999999999888
Q ss_pred eeeeeCcccccccCccccEEEEEEcCCCCEEEEEeCcCeEEEEECCCC----ceeeeeecC-----CCeEEEEEeeCCCE
Q 003579 459 RGSYLDMSERSNYAHNGEVVGVACDSTNTLMISAGYHGDIKVWDFKGR----DLKSRWEVG-----CSLVKIVYHRVNGL 529 (809)
Q Consensus 459 ~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~l~s~~~dg~i~iwd~~~~----~~~~~~~~~-----~~i~~~~~s~~~~~ 529 (809)
...+. +|...|+++..+++|.++.+-+.|.++++||++.. .++..+..+ .....++|+|++..
T Consensus 209 ~~~ls--------Gh~DtIt~lsls~~gs~llsnsMd~tvrvwd~rp~~p~~R~v~if~g~~hnfeknlL~cswsp~~~~ 280 (338)
T KOG0265|consen 209 LYTLS--------GHADTITGLSLSRYGSFLLSNSMDNTVRVWDVRPFAPSQRCVKIFQGHIHNFEKNLLKCSWSPNGTK 280 (338)
T ss_pred eEEee--------cccCceeeEEeccCCCccccccccceEEEEEecccCCCCceEEEeecchhhhhhhcceeeccCCCCc
Confidence 88775 99999999999999999999999999999998743 345555443 45677899999999
Q ss_pred EEEEeCCCeEEEEEcCCCeEEEEEecCCCCeeeEEECCCCCEEEEEeCCCeEEEEE
Q 003579 530 LATVADDLVIRLFDVVALRMVRKFEGHTDRITDFCFSEDGKWLLSSGMDGSLRIWD 585 (809)
Q Consensus 530 la~~~~d~~I~v~d~~~~~~~~~~~~h~~~I~~l~fspdg~~l~s~s~D~~I~vwd 585 (809)
+.+|+.|..+++||..+.+.+..+.||.+.|+.++|+|...+|.+++.|.+|++=.
T Consensus 281 i~ags~dr~vyvwd~~~r~~lyklpGh~gsvn~~~Fhp~e~iils~~sdk~i~lge 336 (338)
T KOG0265|consen 281 ITAGSADRFVYVWDTTSRRILYKLPGHYGSVNEVDFHPTEPIILSCSSDKTIYLGE 336 (338)
T ss_pred cccccccceEEEeecccccEEEEcCCcceeEEEeeecCCCcEEEEeccCceeEeec
Confidence 99999999999999999999999999999999999999999999999999998743
No 45
>KOG0645 consensus WD40 repeat protein [General function prediction only]
Probab=100.00 E-value=2.7e-32 Score=249.16 Aligned_cols=294 Identities=18% Similarity=0.278 Sum_probs=243.7
Q ss_pred eeeEEcCCccccEEEEeCC-CCCCEEEEEeCCCeEEEEeCCCC---ceEEEE-cCCCCCEEEEEEcCCCCEEEEEeCCCe
Q 003579 130 VGHVKLDDKFTPTCIMHPD-TYLNKVIVGSQEGSLQLWNISTK---KKLYEF-KGWGSSISSCVSSPALDVVAVGCSDGK 204 (809)
Q Consensus 130 ~~~~~~~~~~~~~~~~~p~-~~~~~l~~~~~dg~i~lwd~~~~---~~~~~~-~~~~~~I~~l~~sp~~~~la~g~~dg~ 204 (809)
+..++.+...+...++||. + ..|++++.|..|++|+...+ .+...+ .+|...|.+++|+|.|++||+|+-|.+
T Consensus 7 ~~~~~gh~~r~W~~awhp~~g--~ilAscg~Dk~vriw~~~~~~s~~ck~vld~~hkrsVRsvAwsp~g~~La~aSFD~t 84 (312)
T KOG0645|consen 7 EQKLSGHKDRVWSVAWHPGKG--VILASCGTDKAVRIWSTSSGDSWTCKTVLDDGHKRSVRSVAWSPHGRYLASASFDAT 84 (312)
T ss_pred EEeecCCCCcEEEEEeccCCc--eEEEeecCCceEEEEecCCCCcEEEEEeccccchheeeeeeecCCCcEEEEeeccce
Confidence 5566777778889999998 6 68999999999999998743 333333 479999999999999999999999999
Q ss_pred EEEEEeeCC--eEEEEEeccCCCcEEEEEEecCCCCEEEEEcCCCcEEEEECCCc---eeeeeeecccccceEEEEEecC
Q 003579 205 IHVHNVRYD--EELVTFTHSMRGAVTALAFSSDGQPLLASGASSGVISIWNLEKR---RLQSVIREAHDNAIISLHFFAN 279 (809)
Q Consensus 205 i~iwd~~~~--~~~~~~~~~~~~~V~~l~fs~dg~~~lasg~~dg~I~iwdl~~~---~~~~~~~~~h~~~V~~l~~~~~ 279 (809)
+.||.-..+ +++..+.+| ...|.|++|+++|. +||+++.|..|-||.+..+ .+...+. .|...|..+.|+|.
T Consensus 85 ~~Iw~k~~~efecv~~lEGH-EnEVK~Vaws~sG~-~LATCSRDKSVWiWe~deddEfec~aVL~-~HtqDVK~V~WHPt 161 (312)
T KOG0645|consen 85 VVIWKKEDGEFECVATLEGH-ENEVKCVAWSASGN-YLATCSRDKSVWIWEIDEDDEFECIAVLQ-EHTQDVKHVIWHPT 161 (312)
T ss_pred EEEeecCCCceeEEeeeecc-ccceeEEEEcCCCC-EEEEeeCCCeEEEEEecCCCcEEEEeeec-cccccccEEEEcCC
Confidence 999986644 467777765 88999999999999 9999999999999998754 5677777 99999999999999
Q ss_pred CCEEEEEcCCCcEEEEEeeCCCCCceeEEeccCCCCCCeeEEEecCCCEEEEEECCCCEEEEEeeecccceecchhhHHH
Q 003579 280 EPVLMSASADNSIKMWIFDTTDGDPRLLRFRSGHSAPPLCIRFYANGRHILSAGQDRAFRLFSVIQDQQSRELSQRHVAK 359 (809)
Q Consensus 280 ~~~l~s~s~d~~i~vw~~~~~~~~~~~~~~~~~h~~~v~~i~~~~~~~~l~s~~~dg~i~~wd~~~~~~~~~~~~~~~~~ 359 (809)
..+|+++|.|++|++|..+. +....+...+.+|...|.+++|++.|..|++++.|+++++|.....-
T Consensus 162 ~dlL~S~SYDnTIk~~~~~~-dddW~c~~tl~g~~~TVW~~~F~~~G~rl~s~sdD~tv~Iw~~~~~~------------ 228 (312)
T KOG0645|consen 162 EDLLFSCSYDNTIKVYRDED-DDDWECVQTLDGHENTVWSLAFDNIGSRLVSCSDDGTVSIWRLYTDL------------ 228 (312)
T ss_pred cceeEEeccCCeEEEEeecC-CCCeeEEEEecCccceEEEEEecCCCceEEEecCCcceEeeeeccCc------------
Confidence 99999999999999998765 67789999999999999999999999999999999999999854210
Q ss_pred HHhhccchhhhhccCceeEEeeccccccccceeEEeecCCceEEEEEeeeeeecceeeecCCCCCCCeEEEEEcCCCCEE
Q 003579 360 RARKLKMKEEELKLKPVIAFDCAEIRERDWCNVVTCHMDTAQAYVWRLQNFVLGEHILRPCPENPTAVKACTISACGNFA 439 (809)
Q Consensus 360 ~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~v~~v~~s~~g~~l 439 (809)
...|...+..+++. ...+
T Consensus 229 ------------------------------------------------------------~~~~sr~~Y~v~W~--~~~I 246 (312)
T KOG0645|consen 229 ------------------------------------------------------------SGMHSRALYDVPWD--NGVI 246 (312)
T ss_pred ------------------------------------------------------------chhcccceEeeeec--ccce
Confidence 01233677778887 5688
Q ss_pred EEEeCCCcEEEEECCCCceeeeeeCcccccccCccccEEEEEEcCC-CCEEEEEeCcCeEEEEECC
Q 003579 440 VLGTAGGWIERFNLQSGISRGSYLDMSERSNYAHNGEVVGVACDST-NTLMISAGYHGDIKVWDFK 504 (809)
Q Consensus 440 ~~g~~~g~i~i~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~-~~~l~s~~~dg~i~iwd~~ 504 (809)
++++.|+.|++|.-..+.....+... ......|...|++++++|. ..+|++++.||.|++|.+.
T Consensus 247 aS~ggD~~i~lf~~s~~~d~p~~~l~-~~~~~aHe~dVNsV~w~p~~~~~L~s~~DDG~v~~W~l~ 311 (312)
T KOG0645|consen 247 ASGGGDDAIRLFKESDSPDEPSWNLL-AKKEGAHEVDVNSVQWNPKVSNRLASGGDDGIVNFWELE 311 (312)
T ss_pred EeccCCCEEEEEEecCCCCCchHHHH-HhhhcccccccceEEEcCCCCCceeecCCCceEEEEEec
Confidence 99999999999987754222222110 1112479999999999995 6789999999999999864
No 46
>cd00200 WD40 WD40 domain, found in a number of eukaryotic proteins that cover a wide variety of functions including adaptor/regulatory modules in signal transduction, pre-mRNA processing and cytoskeleton assembly; typically contains a GH dipeptide 11-24 residues from its N-terminus and the WD dipeptide at its C-terminus and is 40 residues long, hence the name WD40; between GH and WD lies a conserved core; serves as a stable propeller-like platform to which proteins can bind either stably or reversibly; forms a propeller-like structure with several blades where each blade is composed of a four-stranded anti-parallel b-sheet; instances with few detectable copies are hypothesized to form larger structures by dimerization; each WD40 sequence repeat forms the first three strands of one blade and the last strand in the next blade; the last C-terminal WD40 repeat completes the blade structure of the first WD40 repeat to create the closed ring propeller-structure; residues on the top and botto
Probab=100.00 E-value=4e-32 Score=280.86 Aligned_cols=287 Identities=29% Similarity=0.476 Sum_probs=249.8
Q ss_pred EEEEcCCCCCEEEEEEcCCCCEEEEEeCCCeEEEEEeeCCeEEEEEeccCCCcEEEEEEecCCCCEEEEEcCCCcEEEEE
Q 003579 174 LYEFKGWGSSISSCVSSPALDVVAVGCSDGKIHVHNVRYDEELVTFTHSMRGAVTALAFSSDGQPLLASGASSGVISIWN 253 (809)
Q Consensus 174 ~~~~~~~~~~I~~l~~sp~~~~la~g~~dg~i~iwd~~~~~~~~~~~~~~~~~V~~l~fs~dg~~~lasg~~dg~I~iwd 253 (809)
+.++++|..+|++++|+|++++|++++.+|.+++|++.+++....+..+ ...+..+.|+++++ .+++++.+|.|++||
T Consensus 2 ~~~~~~h~~~i~~~~~~~~~~~l~~~~~~g~i~i~~~~~~~~~~~~~~~-~~~i~~~~~~~~~~-~l~~~~~~~~i~i~~ 79 (289)
T cd00200 2 RRTLKGHTGGVTCVAFSPDGKLLATGSGDGTIKVWDLETGELLRTLKGH-TGPVRDVAASADGT-YLASGSSDKTIRLWD 79 (289)
T ss_pred chHhcccCCCEEEEEEcCCCCEEEEeecCcEEEEEEeeCCCcEEEEecC-CcceeEEEECCCCC-EEEEEcCCCeEEEEE
Confidence 3457789999999999999999999999999999999988877777665 67889999999997 899999999999999
Q ss_pred CCCceeeeeeecccccceEEEEEecCCCEEEEEcCCCcEEEEEeeCCCCCceeEEeccCCCCCCeeEEEecCCCEEEEEE
Q 003579 254 LEKRRLQSVIREAHDNAIISLHFFANEPVLMSASADNSIKMWIFDTTDGDPRLLRFRSGHSAPPLCIRFYANGRHILSAG 333 (809)
Q Consensus 254 l~~~~~~~~~~~~h~~~V~~l~~~~~~~~l~s~s~d~~i~vw~~~~~~~~~~~~~~~~~h~~~v~~i~~~~~~~~l~s~~ 333 (809)
+.+++....+. .|...+.++.|++++.++++++.|+.+++|++... +....+..|...+.++.|+|++.++++++
T Consensus 80 ~~~~~~~~~~~-~~~~~i~~~~~~~~~~~~~~~~~~~~i~~~~~~~~----~~~~~~~~~~~~i~~~~~~~~~~~l~~~~ 154 (289)
T cd00200 80 LETGECVRTLT-GHTSYVSSVAFSPDGRILSSSSRDKTIKVWDVETG----KCLTTLRGHTDWVNSVAFSPDGTFVASSS 154 (289)
T ss_pred cCcccceEEEe-ccCCcEEEEEEcCCCCEEEEecCCCeEEEEECCCc----EEEEEeccCCCcEEEEEEcCcCCEEEEEc
Confidence 99988888887 88889999999999889998888999999988743 45556668888899999999888888877
Q ss_pred CCCCEEEEEeeecccceecchhhHHHHHhhccchhhhhccCceeEEeeccccccccceeEEeecCCceEEEEEeeeeeec
Q 003579 334 QDRAFRLFSVIQDQQSRELSQRHVAKRARKLKMKEEELKLKPVIAFDCAEIRERDWCNVVTCHMDTAQAYVWRLQNFVLG 413 (809)
Q Consensus 334 ~dg~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~ 413 (809)
.|+.+++||+...+.
T Consensus 155 ~~~~i~i~d~~~~~~----------------------------------------------------------------- 169 (289)
T cd00200 155 QDGTIKLWDLRTGKC----------------------------------------------------------------- 169 (289)
T ss_pred CCCcEEEEEcccccc-----------------------------------------------------------------
Confidence 788888888643211
Q ss_pred ceeeecCCCCCCCeEEEEEcCCCCEEEEEeCCCcEEEEECCCCceeeeeeCcccccccCccccEEEEEEcCCCCEEEEEe
Q 003579 414 EHILRPCPENPTAVKACTISACGNFAVLGTAGGWIERFNLQSGISRGSYLDMSERSNYAHNGEVVGVACDSTNTLMISAG 493 (809)
Q Consensus 414 ~~~~~~~~~~~~~v~~v~~s~~g~~l~~g~~~g~i~i~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~l~s~~ 493 (809)
...+ ..|...+.+++++|+++.+++++
T Consensus 170 ---------------------------------------------~~~~--------~~~~~~i~~~~~~~~~~~l~~~~ 196 (289)
T cd00200 170 ---------------------------------------------VATL--------TGHTGEVNSVAFSPDGEKLLSSS 196 (289)
T ss_pred ---------------------------------------------ceeE--------ecCccccceEEECCCcCEEEEec
Confidence 1111 15667889999999998999999
Q ss_pred CcCeEEEEECCCCceeeee-ecCCCeEEEEEeeCCCEEEEEeCCCeEEEEEcCCCeEEEEEecCCCCeeeEEECCCCCEE
Q 003579 494 YHGDIKVWDFKGRDLKSRW-EVGCSLVKIVYHRVNGLLATVADDLVIRLFDVVALRMVRKFEGHTDRITDFCFSEDGKWL 572 (809)
Q Consensus 494 ~dg~i~iwd~~~~~~~~~~-~~~~~i~~~~~s~~~~~la~~~~d~~I~v~d~~~~~~~~~~~~h~~~I~~l~fspdg~~l 572 (809)
.|+.|++||+.+++.+..+ .+...+.++.|++++.++++++.|+.|++||+.+++.+..+.+|...|.+++|+|++++|
T Consensus 197 ~~~~i~i~d~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~i~i~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l 276 (289)
T cd00200 197 SDGTIKLWDLSTGKCLGTLRGHENGVNSVAFSPDGYLLASGSEDGTIRVWDLRTGECVQTLSGHTNSVTSLAWSPDGKRL 276 (289)
T ss_pred CCCcEEEEECCCCceecchhhcCCceEEEEEcCCCcEEEEEcCCCcEEEEEcCCceeEEEccccCCcEEEEEECCCCCEE
Confidence 9999999999998888888 445799999999998888888889999999999999999999999999999999999999
Q ss_pred EEEeCCCeEEEEE
Q 003579 573 LSSGMDGSLRIWD 585 (809)
Q Consensus 573 ~s~s~D~~I~vwd 585 (809)
++++.|+.|++|+
T Consensus 277 ~~~~~d~~i~iw~ 289 (289)
T cd00200 277 ASGSADGTIRIWD 289 (289)
T ss_pred EEecCCCeEEecC
Confidence 9999999999996
No 47
>KOG0285 consensus Pleiotropic regulator 1 [RNA processing and modification]
Probab=100.00 E-value=2.7e-33 Score=264.75 Aligned_cols=295 Identities=17% Similarity=0.262 Sum_probs=258.3
Q ss_pred EEEEccccccEEEEEEe--CCEEEEEeCCCcEEEEEcCCCccccceeeeEEcCCccccEEEEeCCCCCCEEEEEeCCCeE
Q 003579 86 VATWSRHSAKVNLLLLF--GEHILSIDIDGNMFIWAFKGIEENLAPVGHVKLDDKFTPTCIMHPDTYLNKVIVGSQEGSL 163 (809)
Q Consensus 86 ~~~~~~h~~~V~~l~~~--g~~l~s~~~dg~i~vWd~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~l~~~~~dg~i 163 (809)
.+.+.||.+.|.|++++ ..|+++++.|++|+|||+.++++ ..++..+...+..+++++-. .++++++.|+.|
T Consensus 144 ~rVi~gHlgWVr~vavdP~n~wf~tgs~DrtikIwDlatg~L----kltltGhi~~vr~vavS~rH--pYlFs~gedk~V 217 (460)
T KOG0285|consen 144 YRVISGHLGWVRSVAVDPGNEWFATGSADRTIKIWDLATGQL----KLTLTGHIETVRGVAVSKRH--PYLFSAGEDKQV 217 (460)
T ss_pred hhhhhhccceEEEEeeCCCceeEEecCCCceeEEEEcccCeE----EEeecchhheeeeeeecccC--ceEEEecCCCee
Confidence 34488999999999985 78999999999999999999998 66777777778888999988 789999999999
Q ss_pred EEEeCCCCceEEEEcCCCCCEEEEEEcCCCCEEEEEeCCCeEEEEEeeCCeEEEEEeccCCCcEEEEEEecCCCCEEEEE
Q 003579 164 QLWNISTKKKLYEFKGWGSSISSCVSSPALDVVAVGCSDGKIHVHNVRYDEELVTFTHSMRGAVTALAFSSDGQPLLASG 243 (809)
Q Consensus 164 ~lwd~~~~~~~~~~~~~~~~I~~l~~sp~~~~la~g~~dg~i~iwd~~~~~~~~~~~~~~~~~V~~l~fs~dg~~~lasg 243 (809)
+.||++..+.++.+.||-+.|.|++.+|..++|++|+.|.+++|||+++...+..+.+| ..+|.++.+.|-.. .+++|
T Consensus 218 KCwDLe~nkvIR~YhGHlS~V~~L~lhPTldvl~t~grDst~RvWDiRtr~~V~~l~GH-~~~V~~V~~~~~dp-qvit~ 295 (460)
T KOG0285|consen 218 KCWDLEYNKVIRHYHGHLSGVYCLDLHPTLDVLVTGGRDSTIRVWDIRTRASVHVLSGH-TNPVASVMCQPTDP-QVITG 295 (460)
T ss_pred EEEechhhhhHHHhccccceeEEEeccccceeEEecCCcceEEEeeecccceEEEecCC-CCcceeEEeecCCC-ceEEe
Confidence 99999999999999999999999999999999999999999999999999999999887 89999999998766 68999
Q ss_pred cCCCcEEEEECCCceeeeeeecccccceEEEEEecCCCEEEEEcCCCcEEEEEeeCCCCCceeEEeccCCCCCCeeEEEe
Q 003579 244 ASSGVISIWNLEKRRLQSVIREAHDNAIISLHFFANEPVLMSASADNSIKMWIFDTTDGDPRLLRFRSGHSAPPLCIRFY 323 (809)
Q Consensus 244 ~~dg~I~iwdl~~~~~~~~~~~~h~~~V~~l~~~~~~~~l~s~s~d~~i~vw~~~~~~~~~~~~~~~~~h~~~v~~i~~~ 323 (809)
+.|++|++||+..|+...++. .|...|.+++.+|....+++++.|+ ++-|++..+ ..+..+.+|.+-+++++.+
T Consensus 296 S~D~tvrlWDl~agkt~~tlt-~hkksvral~lhP~e~~fASas~dn-ik~w~~p~g----~f~~nlsgh~~iintl~~n 369 (460)
T KOG0285|consen 296 SHDSTVRLWDLRAGKTMITLT-HHKKSVRALCLHPKENLFASASPDN-IKQWKLPEG----EFLQNLSGHNAIINTLSVN 369 (460)
T ss_pred cCCceEEEeeeccCceeEeee-cccceeeEEecCCchhhhhccCCcc-ceeccCCcc----chhhccccccceeeeeeec
Confidence 999999999999999999998 8999999999999999999999875 899987655 4566688999999999999
Q ss_pred cCCCEEEEEECCCCEEEEEeeecccceecchhhHHHHHhhccchhhhhccCceeEEeeccccccccceeEEeecCCceEE
Q 003579 324 ANGRHILSAGQDRAFRLFSVIQDQQSRELSQRHVAKRARKLKMKEEELKLKPVIAFDCAEIRERDWCNVVTCHMDTAQAY 403 (809)
Q Consensus 324 ~~~~~l~s~~~dg~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~ 403 (809)
.|| ++++|+.+|.+.+||.+++..-+.....
T Consensus 370 sD~-v~~~G~dng~~~fwdwksg~nyQ~~~t~------------------------------------------------ 400 (460)
T KOG0285|consen 370 SDG-VLVSGGDNGSIMFWDWKSGHNYQRGQTI------------------------------------------------ 400 (460)
T ss_pred cCc-eEEEcCCceEEEEEecCcCccccccccc------------------------------------------------
Confidence 887 8899999999999999877544332110
Q ss_pred EEEeeeeeecceeeecCCCCCCCeEEEEEcCCCCEEEEEeCCCcEEEEECCC
Q 003579 404 VWRLQNFVLGEHILRPCPENPTAVKACTISACGNFAVLGTAGGWIERFNLQS 455 (809)
Q Consensus 404 ~w~~~~~~~~~~~~~~~~~~~~~v~~v~~s~~g~~l~~g~~~g~i~i~~~~~ 455 (809)
...........|.+.+|...|..|++|..|.+|.+|.-..
T Consensus 401 ------------vqpGSl~sEagI~as~fDktg~rlit~eadKtIk~~keDe 440 (460)
T KOG0285|consen 401 ------------VQPGSLESEAGIFASCFDKTGSRLITGEADKTIKMYKEDE 440 (460)
T ss_pred ------------ccCCccccccceeEEeecccCceEEeccCCcceEEEeccc
Confidence 0000112337899999999999999999999999997543
No 48
>KOG0265 consensus U5 snRNP-specific protein-like factor and related proteins [RNA processing and modification]
Probab=100.00 E-value=8e-33 Score=256.30 Aligned_cols=297 Identities=19% Similarity=0.277 Sum_probs=255.6
Q ss_pred ceeeeEEcCCccccEEEEeCCCCCCEEEEEeCCCeEEEEeC-CCCceEEEEcCCCCCEEEEEEcCCCCEEEEEeCCCeEE
Q 003579 128 APVGHVKLDDKFTPTCIMHPDTYLNKVIVGSQEGSLQLWNI-STKKKLYEFKGWGSSISSCVSSPALDVVAVGCSDGKIH 206 (809)
Q Consensus 128 ~~~~~~~~~~~~~~~~~~~p~~~~~~l~~~~~dg~i~lwd~-~~~~~~~~~~~~~~~I~~l~~sp~~~~la~g~~dg~i~ 206 (809)
.|+..+..+.+.+..+.|+|++ ..+++|+.|..|.+|++ ...+....+++|.++|..+.|.+|++.|++++.|.+++
T Consensus 38 ap~m~l~gh~geI~~~~F~P~g--s~~aSgG~Dr~I~LWnv~gdceN~~~lkgHsgAVM~l~~~~d~s~i~S~gtDk~v~ 115 (338)
T KOG0265|consen 38 APIMLLPGHKGEIYTIKFHPDG--SCFASGGSDRAIVLWNVYGDCENFWVLKGHSGAVMELHGMRDGSHILSCGTDKTVR 115 (338)
T ss_pred chhhhcCCCcceEEEEEECCCC--CeEeecCCcceEEEEeccccccceeeeccccceeEeeeeccCCCEEEEecCCceEE
Confidence 3455667788899999999999 89999999999999995 45567788899999999999999999999999999999
Q ss_pred EEEeeCCeEEEEEeccCCCcEEEEEEecCCCCEEEEEcCCCcEEEEECCCceeeeeeecccccceEEEEEecCCCEEEEE
Q 003579 207 VHNVRYDEELVTFTHSMRGAVTALAFSSDGQPLLASGASSGVISIWNLEKRRLQSVIREAHDNAIISLHFFANEPVLMSA 286 (809)
Q Consensus 207 iwd~~~~~~~~~~~~~~~~~V~~l~fs~dg~~~lasg~~dg~I~iwdl~~~~~~~~~~~~h~~~V~~l~~~~~~~~l~s~ 286 (809)
.||.++|+.++.++.| ..-|.++.-+.-|..++.+|+.||++++||+++...++++. ....++++.|...+..+++|
T Consensus 116 ~wD~~tG~~~rk~k~h-~~~vNs~~p~rrg~~lv~SgsdD~t~kl~D~R~k~~~~t~~--~kyqltAv~f~d~s~qv~sg 192 (338)
T KOG0265|consen 116 GWDAETGKRIRKHKGH-TSFVNSLDPSRRGPQLVCSGSDDGTLKLWDIRKKEAIKTFE--NKYQLTAVGFKDTSDQVISG 192 (338)
T ss_pred EEecccceeeehhccc-cceeeecCccccCCeEEEecCCCceEEEEeecccchhhccc--cceeEEEEEecccccceeec
Confidence 9999999999999987 78899999777787788899999999999999998888875 56789999999999999999
Q ss_pred cCCCcEEEEEeeCCCCCceeEEeccCCCCCCeeEEEecCCCEEEEEECCCCEEEEEeeecccceecchhhHHHHHhhccc
Q 003579 287 SADNSIKMWIFDTTDGDPRLLRFRSGHSAPPLCIRFYANGRHILSAGQDRAFRLFSVIQDQQSRELSQRHVAKRARKLKM 366 (809)
Q Consensus 287 s~d~~i~vw~~~~~~~~~~~~~~~~~h~~~v~~i~~~~~~~~l~s~~~dg~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~ 366 (809)
+-|+.|++||+... ..+..+.||..+|+.+..+++|.++++-+.|.++++||++.-.....
T Consensus 193 gIdn~ikvWd~r~~----d~~~~lsGh~DtIt~lsls~~gs~llsnsMd~tvrvwd~rp~~p~~R--------------- 253 (338)
T KOG0265|consen 193 GIDNDIKVWDLRKN----DGLYTLSGHADTITGLSLSRYGSFLLSNSMDNTVRVWDVRPFAPSQR--------------- 253 (338)
T ss_pred cccCceeeeccccC----cceEEeecccCceeeEEeccCCCccccccccceEEEEEecccCCCCc---------------
Confidence 99999999998776 45777889999999999999999999999999999999875433221
Q ss_pred hhhhhccCceeEEeeccccccccceeEEeecCCceEEEEEeeeeeecceeeecCCCCCCCeEEEEEcCCCCEEEEEeCCC
Q 003579 367 KEEELKLKPVIAFDCAEIRERDWCNVVTCHMDTAQAYVWRLQNFVLGEHILRPCPENPTAVKACTISACGNFAVLGTAGG 446 (809)
Q Consensus 367 ~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~v~~v~~s~~g~~l~~g~~~g 446 (809)
.+.++.-.. + ........++|+|+++++..|+.|.
T Consensus 254 ----------------------------------~v~if~g~~-----h------nfeknlL~cswsp~~~~i~ags~dr 288 (338)
T KOG0265|consen 254 ----------------------------------CVKIFQGHI-----H------NFEKNLLKCSWSPNGTKITAGSADR 288 (338)
T ss_pred ----------------------------------eEEEeecch-----h------hhhhhcceeeccCCCCccccccccc
Confidence 111111000 0 1123456789999999999999999
Q ss_pred cEEEEECCCCceeeeeeCcccccccCccccEEEEEEcCCCCEEEEEeCcCeEEEE
Q 003579 447 WIERFNLQSGISRGSYLDMSERSNYAHNGEVVGVACDSTNTLMISAGYHGDIKVW 501 (809)
Q Consensus 447 ~i~i~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~l~s~~~dg~i~iw 501 (809)
.+++||..+...+..++ +|.+.|.+++|+|....+.+++.|.+|.+=
T Consensus 289 ~vyvwd~~~r~~lyklp--------Gh~gsvn~~~Fhp~e~iils~~sdk~i~lg 335 (338)
T KOG0265|consen 289 FVYVWDTTSRRILYKLP--------GHYGSVNEVDFHPTEPIILSCSSDKTIYLG 335 (338)
T ss_pred eEEEeecccccEEEEcC--------CcceeEEEeeecCCCcEEEEeccCceeEee
Confidence 99999999888777775 999999999999999999999999998763
No 49
>KOG0284 consensus Polyadenylation factor I complex, subunit PFS2 [RNA processing and modification]
Probab=100.00 E-value=2.5e-34 Score=276.67 Aligned_cols=282 Identities=20% Similarity=0.327 Sum_probs=244.0
Q ss_pred CCCCEEEEEEcCCCCEEEEEeCCCeEEEEEeeCCeEEEEEeccCCCcEEEEEEecCCCCEEEEEcCCCcEEEEECCCcee
Q 003579 180 WGSSISSCVSSPALDVVAVGCSDGKIHVHNVRYDEELVTFTHSMRGAVTALAFSSDGQPLLASGASSGVISIWNLEKRRL 259 (809)
Q Consensus 180 ~~~~I~~l~~sp~~~~la~g~~dg~i~iwd~~~~~~~~~~~~~~~~~V~~l~fs~dg~~~lasg~~dg~I~iwdl~~~~~ 259 (809)
-..+|..+.|.|+|+.|++|+..|.+.+||..+- ....+.+.|..+|.++.|+++|. .+++|+.+|.|++|+..-...
T Consensus 95 vkc~V~~v~WtPeGRRLltgs~SGEFtLWNg~~f-nFEtilQaHDs~Vr~m~ws~~g~-wmiSgD~gG~iKyWqpnmnnV 172 (464)
T KOG0284|consen 95 VKCPVNVVRWTPEGRRLLTGSQSGEFTLWNGTSF-NFETILQAHDSPVRTMKWSHNGT-WMISGDKGGMIKYWQPNMNNV 172 (464)
T ss_pred cccceeeEEEcCCCceeEeecccccEEEecCcee-eHHHHhhhhcccceeEEEccCCC-EEEEcCCCceEEecccchhhh
Confidence 3568999999999999999999999999997422 22233355689999999999999 999999999999999865543
Q ss_pred eeeeecccccceEEEEEecCCCEEEEEcCCCcEEEEEeeCCCCCceeEEeccCCCCCCeeEEEecCCCEEEEEECCCCEE
Q 003579 260 QSVIREAHDNAIISLHFFANEPVLMSASADNSIKMWIFDTTDGDPRLLRFRSGHSAPPLCIRFYANGRHILSAGQDRAFR 339 (809)
Q Consensus 260 ~~~~~~~h~~~V~~l~~~~~~~~l~s~s~d~~i~vw~~~~~~~~~~~~~~~~~h~~~v~~i~~~~~~~~l~s~~~dg~i~ 339 (809)
..+..+|...|++++|+|+...+++++.||+|+|||+..... .+.+.||.-.|.++.|+|....++++|.|..|+
T Consensus 173 -k~~~ahh~eaIRdlafSpnDskF~t~SdDg~ikiWdf~~~ke----e~vL~GHgwdVksvdWHP~kgLiasgskDnlVK 247 (464)
T KOG0284|consen 173 -KIIQAHHAEAIRDLAFSPNDSKFLTCSDDGTIKIWDFRMPKE----ERVLRGHGWDVKSVDWHPTKGLIASGSKDNLVK 247 (464)
T ss_pred -HHhhHhhhhhhheeccCCCCceeEEecCCCeEEEEeccCCch----hheeccCCCCcceeccCCccceeEEccCCceeE
Confidence 444436679999999999999999999999999999877643 344479999999999999888999999999999
Q ss_pred EEEeeecccceecchhhHHHHHhhccchhhhhccCceeEEeeccccccccceeEEeecCCceEEEEEeeeeeecceeeec
Q 003579 340 LFSVIQDQQSRELSQRHVAKRARKLKMKEEELKLKPVIAFDCAEIRERDWCNVVTCHMDTAQAYVWRLQNFVLGEHILRP 419 (809)
Q Consensus 340 ~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~ 419 (809)
+||.+++.++..+.
T Consensus 248 lWDprSg~cl~tlh------------------------------------------------------------------ 261 (464)
T KOG0284|consen 248 LWDPRSGSCLATLH------------------------------------------------------------------ 261 (464)
T ss_pred eecCCCcchhhhhh------------------------------------------------------------------
Confidence 99999887765542
Q ss_pred CCCCCCCeEEEEEcCCCCEEEEEeCCCcEEEEECCCCceeeeeeCcccccccCccccEEEEEEcCCC-CEEEEEeCcCeE
Q 003579 420 CPENPTAVKACTISACGNFAVLGTAGGWIERFNLQSGISRGSYLDMSERSNYAHNGEVVGVACDSTN-TLMISAGYHGDI 498 (809)
Q Consensus 420 ~~~~~~~v~~v~~s~~g~~l~~g~~~g~i~i~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~-~~l~s~~~dg~i 498 (809)
.|+..|..+.|++++++|++++.|..+++||+++.+.+..+. +|...|++++|+|-. .++.+++.||.|
T Consensus 262 --~HKntVl~~~f~~n~N~Llt~skD~~~kv~DiR~mkEl~~~r--------~Hkkdv~~~~WhP~~~~lftsgg~Dgsv 331 (464)
T KOG0284|consen 262 --GHKNTVLAVKFNPNGNWLLTGSKDQSCKVFDIRTMKELFTYR--------GHKKDVTSLTWHPLNESLFTSGGSDGSV 331 (464)
T ss_pred --hccceEEEEEEcCCCCeeEEccCCceEEEEehhHhHHHHHhh--------cchhhheeeccccccccceeeccCCCce
Confidence 466899999999999999999999999999999888777775 999999999999965 678899999999
Q ss_pred EEEECCCCceeeeeec--CCCeEEEEEeeCCCEEEEEeCCCeEEEEEc
Q 003579 499 KVWDFKGRDLKSRWEV--GCSLVKIVYHRVNGLLATVADDLVIRLFDV 544 (809)
Q Consensus 499 ~iwd~~~~~~~~~~~~--~~~i~~~~~s~~~~~la~~~~d~~I~v~d~ 544 (809)
..|.+...+++..+.. ...|++++|+|-|.+||+|+.|.++++|.-
T Consensus 332 vh~~v~~~~p~~~i~~AHd~~iwsl~~hPlGhil~tgsnd~t~rfw~r 379 (464)
T KOG0284|consen 332 VHWVVGLEEPLGEIPPAHDGEIWSLAYHPLGHILATGSNDRTVRFWTR 379 (464)
T ss_pred EEEeccccccccCCCcccccceeeeeccccceeEeecCCCcceeeecc
Confidence 9999987777766654 489999999999999999999999999964
No 50
>KOG0293 consensus WD40 repeat-containing protein [Function unknown]
Probab=100.00 E-value=1.6e-33 Score=271.07 Aligned_cols=290 Identities=16% Similarity=0.266 Sum_probs=234.9
Q ss_pred eEEEEcCCCCCEEEEEEcCCCCEEEEEeCCCeEEEEEeeCCeE---EEEEeccCCCcEEEEEEecCCCCEEEEEcCCCcE
Q 003579 173 KLYEFKGWGSSISSCVSSPALDVVAVGCSDGKIHVHNVRYDEE---LVTFTHSMRGAVTALAFSSDGQPLLASGASSGVI 249 (809)
Q Consensus 173 ~~~~~~~~~~~I~~l~~sp~~~~la~g~~dg~i~iwd~~~~~~---~~~~~~~~~~~V~~l~fs~dg~~~lasg~~dg~I 249 (809)
..+.+..|...|.-+.||++|++||+++.|.+..+|.+..+.. ..++.+| ..+|..+.||||.+ +|++++.+..+
T Consensus 216 t~qil~~htdEVWfl~FS~nGkyLAsaSkD~Taiiw~v~~d~~~kl~~tlvgh-~~~V~yi~wSPDdr-yLlaCg~~e~~ 293 (519)
T KOG0293|consen 216 TWQILQDHTDEVWFLQFSHNGKYLASASKDSTAIIWIVVYDVHFKLKKTLVGH-SQPVSYIMWSPDDR-YLLACGFDEVL 293 (519)
T ss_pred hhhhHhhCCCcEEEEEEcCCCeeEeeccCCceEEEEEEecCcceeeeeeeecc-cCceEEEEECCCCC-eEEecCchHhe
Confidence 3456788999999999999999999999999999999987665 5555555 78999999999999 77778878889
Q ss_pred EEEECCCceeeeeeecccccceEEEEEecCCCEEEEEcCCCcEEEEEeeCCCCCceeEEeccCC-CCCCeeEEEecCCCE
Q 003579 250 SIWNLEKRRLQSVIREAHDNAIISLHFFANEPVLMSASADNSIKMWIFDTTDGDPRLLRFRSGH-SAPPLCIRFYANGRH 328 (809)
Q Consensus 250 ~iwdl~~~~~~~~~~~~h~~~V~~l~~~~~~~~l~s~s~d~~i~vw~~~~~~~~~~~~~~~~~h-~~~v~~i~~~~~~~~ 328 (809)
.+||..+|.....+..+|...+.+++|.|||..+++|+.|+++..|+++... +....+- ...|.+++..+||++
T Consensus 294 ~lwDv~tgd~~~~y~~~~~~S~~sc~W~pDg~~~V~Gs~dr~i~~wdlDgn~-----~~~W~gvr~~~v~dlait~Dgk~ 368 (519)
T KOG0293|consen 294 SLWDVDTGDLRHLYPSGLGFSVSSCAWCPDGFRFVTGSPDRTIIMWDLDGNI-----LGNWEGVRDPKVHDLAITYDGKY 368 (519)
T ss_pred eeccCCcchhhhhcccCcCCCcceeEEccCCceeEecCCCCcEEEecCCcch-----hhcccccccceeEEEEEcCCCcE
Confidence 9999999999999887778899999999999999999999999999887652 2222222 234677777777777
Q ss_pred EEEEECCCCEEEEEeeecccceecchhhHHHHHhhccchhhhhccCceeEEeeccccccccceeEEeecCCceEEEEEee
Q 003579 329 ILSAGQDRAFRLFSVIQDQQSRELSQRHVAKRARKLKMKEEELKLKPVIAFDCAEIRERDWCNVVTCHMDTAQAYVWRLQ 408 (809)
Q Consensus 329 l~s~~~dg~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~ 408 (809)
+++.+.|..+++++.....
T Consensus 369 vl~v~~d~~i~l~~~e~~~------------------------------------------------------------- 387 (519)
T KOG0293|consen 369 VLLVTVDKKIRLYNREARV------------------------------------------------------------- 387 (519)
T ss_pred EEEEecccceeeechhhhh-------------------------------------------------------------
Confidence 7777777777777653321
Q ss_pred eeeecceeeecCCCCCCCeEEEEEcCCCCEEEEEeCCCcEEEEECCCCceeeeeeCcccccccCccccEEEEEEcCCCCE
Q 003579 409 NFVLGEHILRPCPENPTAVKACTISACGNFAVLGTAGGWIERFNLQSGISRGSYLDMSERSNYAHNGEVVGVACDSTNTL 488 (809)
Q Consensus 409 ~~~~~~~~~~~~~~~~~~v~~v~~s~~g~~l~~g~~~g~i~i~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~ 488 (809)
.+.. .....+|+++.++.++++
T Consensus 388 -------------------------------------------------dr~l---------ise~~~its~~iS~d~k~ 409 (519)
T KOG0293|consen 388 -------------------------------------------------DRGL---------ISEEQPITSFSISKDGKL 409 (519)
T ss_pred -------------------------------------------------hhcc---------ccccCceeEEEEcCCCcE
Confidence 1111 133467888888888888
Q ss_pred EEEEeCcCeEEEEECCCCceeeeeecC---CCeEEEEEee-CCCEEEEEeCCCeEEEEEcCCCeEEEEEecCCCCeeeEE
Q 003579 489 MISAGYHGDIKVWDFKGRDLKSRWEVG---CSLVKIVYHR-VNGLLATVADDLVIRLFDVVALRMVRKFEGHTDRITDFC 564 (809)
Q Consensus 489 l~s~~~dg~i~iwd~~~~~~~~~~~~~---~~i~~~~~s~-~~~~la~~~~d~~I~v~d~~~~~~~~~~~~h~~~I~~l~ 564 (809)
+++.-.+..+++||++..+++..+.++ .-+..-||.- +..++|+|++|+.|+||+..+++++.++.||...|++++
T Consensus 410 ~LvnL~~qei~LWDl~e~~lv~kY~Ghkq~~fiIrSCFgg~~~~fiaSGSED~kvyIWhr~sgkll~~LsGHs~~vNcVs 489 (519)
T KOG0293|consen 410 ALVNLQDQEIHLWDLEENKLVRKYFGHKQGHFIIRSCFGGGNDKFIASGSEDSKVYIWHRISGKLLAVLSGHSKTVNCVS 489 (519)
T ss_pred EEEEcccCeeEEeecchhhHHHHhhcccccceEEEeccCCCCcceEEecCCCceEEEEEccCCceeEeecCCcceeeEEe
Confidence 888888888999999888777777655 3344445544 558999999999999999999999999999999999999
Q ss_pred ECCCC-CEEEEEeCCCeEEEEEcCC
Q 003579 565 FSEDG-KWLLSSGMDGSLRIWDVIL 588 (809)
Q Consensus 565 fspdg-~~l~s~s~D~~I~vwd~~~ 588 (809)
|+|.. .++|+||.||+||||-...
T Consensus 490 wNP~~p~m~ASasDDgtIRIWg~~~ 514 (519)
T KOG0293|consen 490 WNPADPEMFASASDDGTIRIWGPSD 514 (519)
T ss_pred cCCCCHHHhhccCCCCeEEEecCCc
Confidence 99954 6789999999999998653
No 51
>KOG0282 consensus mRNA splicing factor [Function unknown]
Probab=100.00 E-value=5.3e-34 Score=280.65 Aligned_cols=288 Identities=20% Similarity=0.333 Sum_probs=255.0
Q ss_pred eeeeeeecccccceEEEEEec-CCCEEEEEcCCCcEEEEEeeCCCCCceeEEeccCCCCCCeeEEEecCCCEEEEEECCC
Q 003579 258 RLQSVIREAHDNAIISLHFFA-NEPVLMSASADNSIKMWIFDTTDGDPRLLRFRSGHSAPPLCIRFYANGRHILSAGQDR 336 (809)
Q Consensus 258 ~~~~~~~~~h~~~V~~l~~~~-~~~~l~s~s~d~~i~vw~~~~~~~~~~~~~~~~~h~~~v~~i~~~~~~~~l~s~~~dg 336 (809)
+.+..+. +|...|+++.|.| .+.+|++++.|+.|++|++-.. .++++++.||..+|..++|+++|..+++++.|+
T Consensus 205 k~~~~~~-gH~kgvsai~~fp~~~hLlLS~gmD~~vklW~vy~~---~~~lrtf~gH~k~Vrd~~~s~~g~~fLS~sfD~ 280 (503)
T KOG0282|consen 205 KLSHNLS-GHTKGVSAIQWFPKKGHLLLSGGMDGLVKLWNVYDD---RRCLRTFKGHRKPVRDASFNNCGTSFLSASFDR 280 (503)
T ss_pred hheeecc-CCccccchhhhccceeeEEEecCCCceEEEEEEecC---cceehhhhcchhhhhhhhccccCCeeeeeecce
Confidence 4455666 9999999999999 8889999999999999998763 379999999999999999999999999999999
Q ss_pred CEEEEEeeecccceecchhhHHHHHhhccchhhhhccCceeEEeeccccccccceeEEeecCCceEEEEEeeeeeeccee
Q 003579 337 AFRLFSVIQDQQSRELSQRHVAKRARKLKMKEEELKLKPVIAFDCAEIRERDWCNVVTCHMDTAQAYVWRLQNFVLGEHI 416 (809)
Q Consensus 337 ~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~ 416 (809)
.+++||++++++...+..
T Consensus 281 ~lKlwDtETG~~~~~f~~-------------------------------------------------------------- 298 (503)
T KOG0282|consen 281 FLKLWDTETGQVLSRFHL-------------------------------------------------------------- 298 (503)
T ss_pred eeeeeccccceEEEEEec--------------------------------------------------------------
Confidence 999999999987766543
Q ss_pred eecCCCCCCCeEEEEEcCCC-CEEEEEeCCCcEEEEECCCCceeeeeeCcccccccCccccEEEEEEcCCCCEEEEEeCc
Q 003579 417 LRPCPENPTAVKACTISACG-NFAVLGTAGGWIERFNLQSGISRGSYLDMSERSNYAHNGEVVGVACDSTNTLMISAGYH 495 (809)
Q Consensus 417 ~~~~~~~~~~v~~v~~s~~g-~~l~~g~~~g~i~i~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~l~s~~~d 495 (809)
...++++.+.|++ +.+++|+.|+.|+.||+++++.+..+. .|-+.|..+.|-++|+++++++.|
T Consensus 299 -------~~~~~cvkf~pd~~n~fl~G~sd~ki~~wDiRs~kvvqeYd--------~hLg~i~~i~F~~~g~rFissSDd 363 (503)
T KOG0282|consen 299 -------DKVPTCVKFHPDNQNIFLVGGSDKKIRQWDIRSGKVVQEYD--------RHLGAILDITFVDEGRRFISSSDD 363 (503)
T ss_pred -------CCCceeeecCCCCCcEEEEecCCCcEEEEeccchHHHHHHH--------hhhhheeeeEEccCCceEeeeccC
Confidence 1567899999999 899999999999999999999999886 899999999999999999999999
Q ss_pred CeEEEEECCCCceeeeeecC--CCeEEEEEeeCCCEEEEEeCCCeEEEEEcCCC---eEEEEEecCC--CCeeeEEECCC
Q 003579 496 GDIKVWDFKGRDLKSRWEVG--CSLVKIVYHRVNGLLATVADDLVIRLFDVVAL---RMVRKFEGHT--DRITDFCFSED 568 (809)
Q Consensus 496 g~i~iwd~~~~~~~~~~~~~--~~i~~~~~s~~~~~la~~~~d~~I~v~d~~~~---~~~~~~~~h~--~~I~~l~fspd 568 (809)
+.++||+.....++..+... ....++..+|+++++++-+.|+.|.++.+... ...+.|.||. +.-..+.||||
T Consensus 364 ks~riWe~~~~v~ik~i~~~~~hsmP~~~~~P~~~~~~aQs~dN~i~ifs~~~~~r~nkkK~feGh~vaGys~~v~fSpD 443 (503)
T KOG0282|consen 364 KSVRIWENRIPVPIKNIADPEMHTMPCLTLHPNGKWFAAQSMDNYIAIFSTVPPFRLNKKKRFEGHSVAGYSCQVDFSPD 443 (503)
T ss_pred ccEEEEEcCCCccchhhcchhhccCcceecCCCCCeehhhccCceEEEEecccccccCHhhhhcceeccCceeeEEEcCC
Confidence 99999999988776655433 56778999999999999999999999986543 2345688886 45667899999
Q ss_pred CCEEEEEeCCCeEEEEEcCCccEEEEeeeC-cceEEEEEcCCC-CeEEEEEeCCCeEEEee
Q 003579 569 GKWLLSSGMDGSLRIWDVILARQIDAIHVD-VSITALSLSPNM-DVLATAHVDQNGVYLWV 627 (809)
Q Consensus 569 g~~l~s~s~D~~I~vwd~~~~~~i~~~~~~-~~v~~l~~spdg-~~lat~~~d~~~i~lW~ 627 (809)
|++|++|+.||.+.+||..+-+++..+..| .+|..+.|+|.. ..+||++.|| .|++|+
T Consensus 444 G~~l~SGdsdG~v~~wdwkt~kl~~~lkah~~~ci~v~wHP~e~Skvat~~w~G-~Ikiwd 503 (503)
T KOG0282|consen 444 GRTLCSGDSDGKVNFWDWKTTKLVSKLKAHDQPCIGVDWHPVEPSKVATCGWDG-LIKIWD 503 (503)
T ss_pred CCeEEeecCCccEEEeechhhhhhhccccCCcceEEEEecCCCcceeEecccCc-eeEecC
Confidence 999999999999999999999999999887 569999999954 5799999999 599996
No 52
>KOG0278 consensus Serine/threonine kinase receptor-associated protein [Lipid transport and metabolism]
Probab=100.00 E-value=2e-33 Score=252.95 Aligned_cols=290 Identities=19% Similarity=0.331 Sum_probs=258.8
Q ss_pred EEEcCCCCCEEEEEEcC---CCCEEEEEeCCCeEEEEEeeCCeEEEEEeccCCCcEEEEEEecCCCCEEEEEcCCCcEEE
Q 003579 175 YEFKGWGSSISSCVSSP---ALDVVAVGCSDGKIHVHNVRYDEELVTFTHSMRGAVTALAFSSDGQPLLASGASSGVISI 251 (809)
Q Consensus 175 ~~~~~~~~~I~~l~~sp---~~~~la~g~~dg~i~iwd~~~~~~~~~~~~~~~~~V~~l~fs~dg~~~lasg~~dg~I~i 251 (809)
.+-.+|..+|..++||| +|-+|++++.||.-.+-+-++|.-+.+|.+| ++.|.+.+...+.. ..|+++.|-+-++
T Consensus 8 l~c~ghtrpvvdl~~s~itp~g~flisa~kd~~pmlr~g~tgdwigtfegh-kgavw~~~l~~na~-~aasaaadftakv 85 (334)
T KOG0278|consen 8 LTCHGHTRPVVDLAFSPITPDGYFLISASKDGKPMLRNGDTGDWIGTFEGH-KGAVWSATLNKNAT-RAASAAADFTAKV 85 (334)
T ss_pred eEEcCCCcceeEEeccCCCCCceEEEEeccCCCchhccCCCCCcEEeeecc-CcceeeeecCchhh-hhhhhcccchhhh
Confidence 45578999999999985 8889999999999999999999999999987 99999999998877 7889999999999
Q ss_pred EECCCceeeeeeecccccceEEEEEecCCCEEEEEcCCCcEEEEEeeCCCCCceeEEeccCCCCCCeeEEEecCCCEEEE
Q 003579 252 WNLEKRRLQSVIREAHDNAIISLHFFANEPVLMSASADNSIKMWIFDTTDGDPRLLRFRSGHSAPPLCIRFYANGRHILS 331 (809)
Q Consensus 252 wdl~~~~~~~~~~~~h~~~V~~l~~~~~~~~l~s~s~d~~i~vw~~~~~~~~~~~~~~~~~h~~~v~~i~~~~~~~~l~s 331 (809)
||.-+|..+..+. |..-|.+++|+.|.++|++|+.+..+|+++++..... .....+|.+.|..+.|....+.+++
T Consensus 86 w~a~tgdelhsf~--hkhivk~~af~~ds~~lltgg~ekllrvfdln~p~Ap---p~E~~ghtg~Ir~v~wc~eD~~iLS 160 (334)
T KOG0278|consen 86 WDAVTGDELHSFE--HKHIVKAVAFSQDSNYLLTGGQEKLLRVFDLNRPKAP---PKEISGHTGGIRTVLWCHEDKCILS 160 (334)
T ss_pred hhhhhhhhhhhhh--hhheeeeEEecccchhhhccchHHHhhhhhccCCCCC---chhhcCCCCcceeEEEeccCceEEe
Confidence 9999999999986 8889999999999999999999999999999887644 3445799999999999999999999
Q ss_pred EECCCCEEEEEeeecccceecchhhHHHHHhhccchhhhhccCceeEEeeccccccccceeEEeecCCceEEEEEeeeee
Q 003579 332 AGQDRAFRLFSVIQDQQSRELSQRHVAKRARKLKMKEEELKLKPVIAFDCAEIRERDWCNVVTCHMDTAQAYVWRLQNFV 411 (809)
Q Consensus 332 ~~~dg~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~ 411 (809)
++.|++||+||.+++...+.+
T Consensus 161 Sadd~tVRLWD~rTgt~v~sL----------------------------------------------------------- 181 (334)
T KOG0278|consen 161 SADDKTVRLWDHRTGTEVQSL----------------------------------------------------------- 181 (334)
T ss_pred eccCCceEEEEeccCcEEEEE-----------------------------------------------------------
Confidence 999999999998877554433
Q ss_pred ecceeeecCCCCCCCeEEEEEcCCCCEEEEEeCCCcEEEEECCCCceeeeeeCcccccccCccccEEEEEEcCCCCEEEE
Q 003579 412 LGEHILRPCPENPTAVKACTISACGNFAVLGTAGGWIERFNLQSGISRGSYLDMSERSNYAHNGEVVGVACDSTNTLMIS 491 (809)
Q Consensus 412 ~~~~~~~~~~~~~~~v~~v~~s~~g~~l~~g~~~g~i~i~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~l~s 491 (809)
..+.+|+++.++++|+++.+
T Consensus 182 ------------------------------------------------------------~~~s~VtSlEvs~dG~ilTi 201 (334)
T KOG0278|consen 182 ------------------------------------------------------------EFNSPVTSLEVSQDGRILTI 201 (334)
T ss_pred ------------------------------------------------------------ecCCCCcceeeccCCCEEEE
Confidence 23456778888888876654
Q ss_pred EeCcCeEEEEECCCCceeeeeecCCCeEEEEEeeCCCEEEEEeCCCeEEEEEcCCCeEEEEE-ecCCCCeeeEEECCCCC
Q 003579 492 AGYHGDIKVWDFKGRDLKSRWEVGCSLVKIVYHRVNGLLATVADDLVIRLFDVVALRMVRKF-EGHTDRITDFCFSEDGK 570 (809)
Q Consensus 492 ~~~dg~i~iwd~~~~~~~~~~~~~~~i~~~~~s~~~~~la~~~~d~~I~v~d~~~~~~~~~~-~~h~~~I~~l~fspdg~ 570 (809)
+ ..+.|++||.++-.+++.++....|.+..++|+...+++|+.|+.++.||..+++.+..+ +||.++|.++.|+|||.
T Consensus 202 a-~gssV~Fwdaksf~~lKs~k~P~nV~SASL~P~k~~fVaGged~~~~kfDy~TgeEi~~~nkgh~gpVhcVrFSPdGE 280 (334)
T KOG0278|consen 202 A-YGSSVKFWDAKSFGLLKSYKMPCNVESASLHPKKEFFVAGGEDFKVYKFDYNTGEEIGSYNKGHFGPVHCVRFSPDGE 280 (334)
T ss_pred e-cCceeEEeccccccceeeccCccccccccccCCCceEEecCcceEEEEEeccCCceeeecccCCCCceEEEEECCCCc
Confidence 4 457899999999999999999999999999999999999999999999999999998886 89999999999999999
Q ss_pred EEEEEeCCCeEEEEEcCCccE
Q 003579 571 WLLSSGMDGSLRIWDVILARQ 591 (809)
Q Consensus 571 ~l~s~s~D~~I~vwd~~~~~~ 591 (809)
..++||+||+||+|-...++.
T Consensus 281 ~yAsGSEDGTirlWQt~~~~~ 301 (334)
T KOG0278|consen 281 LYASGSEDGTIRLWQTTPGKT 301 (334)
T ss_pred eeeccCCCceEEEEEecCCCc
Confidence 999999999999998765543
No 53
>KOG2048 consensus WD40 repeat protein [General function prediction only]
Probab=100.00 E-value=6.8e-29 Score=254.45 Aligned_cols=500 Identities=16% Similarity=0.236 Sum_probs=358.4
Q ss_pred cccccEEEEEE--eCCEEEEEeCCCcEEEEEcCCCccccceeeeEEcCC-ccccEEEEeCCCCCCEEEEEeCCCeEEEEe
Q 003579 91 RHSAKVNLLLL--FGEHILSIDIDGNMFIWAFKGIEENLAPVGHVKLDD-KFTPTCIMHPDTYLNKVIVGSQEGSLQLWN 167 (809)
Q Consensus 91 ~h~~~V~~l~~--~g~~l~s~~~dg~i~vWd~~~~~~~~~~~~~~~~~~-~~~~~~~~~p~~~~~~l~~~~~dg~i~lwd 167 (809)
-...+|++|++ ..+.||.+-.+|.|.+|++...-.. ...+.++. ..+-..+|.+. .+|.+.+.+|.|.-||
T Consensus 23 ~~Ps~I~slA~s~kS~~lAvsRt~g~IEiwN~~~~w~~---~~vi~g~~drsIE~L~W~e~---~RLFS~g~sg~i~EwD 96 (691)
T KOG2048|consen 23 YKPSEIVSLAYSHKSNQLAVSRTDGNIEIWNLSNNWFL---EPVIHGPEDRSIESLAWAEG---GRLFSSGLSGSITEWD 96 (691)
T ss_pred eeccceEEEEEeccCCceeeeccCCcEEEEccCCCcee---eEEEecCCCCceeeEEEccC---CeEEeecCCceEEEEe
Confidence 34567999998 4677999989999999999885441 33444443 44556667744 5899999999999999
Q ss_pred CCCCceEEEEcCCCCCEEEEEEcCCCCEEEEEeCCCeEEEEEeeCCeEEEEEec-cCCCcEEEEEEecCCCCEEEEEcCC
Q 003579 168 ISTKKKLYEFKGWGSSISSCVSSPALDVVAVGCSDGKIHVHNVRYDEELVTFTH-SMRGAVTALAFSSDGQPLLASGASS 246 (809)
Q Consensus 168 ~~~~~~~~~~~~~~~~I~~l~~sp~~~~la~g~~dg~i~iwd~~~~~~~~~~~~-~~~~~V~~l~fs~dg~~~lasg~~d 246 (809)
+.+++..+.+....+.|.+++.+|.++.+++|+.||.+..++...++....... ..++.|.+++|+|++. .+++|+.|
T Consensus 97 l~~lk~~~~~d~~gg~IWsiai~p~~~~l~IgcddGvl~~~s~~p~~I~~~r~l~rq~sRvLslsw~~~~~-~i~~Gs~D 175 (691)
T KOG2048|consen 97 LHTLKQKYNIDSNGGAIWSIAINPENTILAIGCDDGVLYDFSIGPDKITYKRSLMRQKSRVLSLSWNPTGT-KIAGGSID 175 (691)
T ss_pred cccCceeEEecCCCcceeEEEeCCccceEEeecCCceEEEEecCCceEEEEeecccccceEEEEEecCCcc-EEEecccC
Confidence 999999999999999999999999999999999999888888877776554432 2258999999999998 89999999
Q ss_pred CcEEEEECCCceeeeeee-------cccccceEEEEEecCCCEEEEEcCCCcEEEEEeeCCCCCceeEEeccCCCCCCee
Q 003579 247 GVISIWNLEKRRLQSVIR-------EAHDNAIISLHFFANEPVLMSASADNSIKMWIFDTTDGDPRLLRFRSGHSAPPLC 319 (809)
Q Consensus 247 g~I~iwdl~~~~~~~~~~-------~~h~~~V~~l~~~~~~~~l~s~s~d~~i~vw~~~~~~~~~~~~~~~~~h~~~v~~ 319 (809)
|.|++||..++..+.... .....-|+++.|..++ .+++|..-|+|++||.... .++.....|.+.|.+
T Consensus 176 g~Iriwd~~~~~t~~~~~~~~d~l~k~~~~iVWSv~~Lrd~-tI~sgDS~G~V~FWd~~~g----TLiqS~~~h~adVl~ 250 (691)
T KOG2048|consen 176 GVIRIWDVKSGQTLHIITMQLDRLSKREPTIVWSVLFLRDS-TIASGDSAGTVTFWDSIFG----TLIQSHSCHDADVLA 250 (691)
T ss_pred ceEEEEEcCCCceEEEeeecccccccCCceEEEEEEEeecC-cEEEecCCceEEEEcccCc----chhhhhhhhhcceeE
Confidence 999999999997766222 1123458899999766 7999999999999987766 577888899999999
Q ss_pred EEEecCCCEEEEEECCCCEEEEEeeecccceecchhhHHHHHhhccchhhhhccCceeEEeeccccccccceeEEeecCC
Q 003579 320 IRFYANGRHILSAGQDRAFRLFSVIQDQQSRELSQRHVAKRARKLKMKEEELKLKPVIAFDCAEIRERDWCNVVTCHMDT 399 (809)
Q Consensus 320 i~~~~~~~~l~s~~~dg~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~ 399 (809)
++..+++.+++++|.|+.+..+...+....-... ....++...+.+++..+ +.+..+..+
T Consensus 251 Lav~~~~d~vfsaGvd~~ii~~~~~~~~~~wv~~-------------~~r~~h~hdvrs~av~~-------~~l~sgG~d 310 (691)
T KOG2048|consen 251 LAVADNEDRVFSAGVDPKIIQYSLTTNKSEWVIN-------------SRRDLHAHDVRSMAVIE-------NALISGGRD 310 (691)
T ss_pred EEEcCCCCeEEEccCCCceEEEEecCCccceeee-------------ccccCCcccceeeeeec-------ceEEeccee
Confidence 9999999999999999999988876654311100 00111112222222221 244444444
Q ss_pred ceEEEEEeeeeeecceeeecCCCCCCCeEEEEEcCCCCEEEEEeCCCcEEEEECCCCceeeeeeCcccc-cccCccccEE
Q 003579 400 AQAYVWRLQNFVLGEHILRPCPENPTAVKACTISACGNFAVLGTAGGWIERFNLQSGISRGSYLDMSER-SNYAHNGEVV 478 (809)
Q Consensus 400 ~~~~~w~~~~~~~~~~~~~~~~~~~~~v~~v~~s~~g~~l~~g~~~g~i~i~~~~~~~~~~~~~~~~~~-~~~~h~~~v~ 478 (809)
..+.+-.........+. .+.. .+-.+.....-.+++++--....+.+|.+.+......+...... ........|.
T Consensus 311 ~~l~i~~s~~~~~~~h~-~~~~---~p~~~~v~~a~~~~L~~~w~~h~v~lwrlGS~~~~g~~~~~~Llkl~~k~~~nIs 386 (691)
T KOG2048|consen 311 FTLAICSSREFKNMDHR-QKNL---FPASDRVSVAPENRLLVLWKAHGVDLWRLGSVILQGEYNYIHLLKLFTKEKENIS 386 (691)
T ss_pred eEEEEccccccCchhhh-cccc---ccccceeecCccceEEEEeccccccceeccCcccccccChhhheeeecCCcccee
Confidence 45544444443333333 1111 12222333334466777777778888888777444322211000 0123456799
Q ss_pred EEEEcCCCCEEEEEeCcCeEEEEECCCCceeeeeecC------CCeEEEEEeeCCCEEEEEe-CCCeEEEEEcCCCeE--
Q 003579 479 GVACDSTNTLMISAGYHGDIKVWDFKGRDLKSRWEVG------CSLVKIVYHRVNGLLATVA-DDLVIRLFDVVALRM-- 549 (809)
Q Consensus 479 ~l~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~------~~i~~~~~s~~~~~la~~~-~d~~I~v~d~~~~~~-- 549 (809)
+.+++|+|++++.+.- ..+++|.++....+...... -....+.|+-|+..++.++ ++..+.+++.++...
T Consensus 387 ~~aiSPdg~~Ia~st~-~~~~iy~L~~~~~vk~~~v~~~~~~~~~a~~i~ftid~~k~~~~s~~~~~le~~el~~ps~ke 465 (691)
T KOG2048|consen 387 CAAISPDGNLIAISTV-SRTKIYRLQPDPNVKVINVDDVPLALLDASAISFTIDKNKLFLVSKNIFSLEEFELETPSFKE 465 (691)
T ss_pred eeccCCCCCEEEEeec-cceEEEEeccCcceeEEEeccchhhhccceeeEEEecCceEEEEecccceeEEEEecCcchhh
Confidence 9999999999987765 56788887754333333222 4677888999988888877 778888888876532
Q ss_pred EEEEe--cCCCCeeeEEECCCCCEEEEEeCCCeEEEEEcCCccEEEEe-eeCcceEEEEEcC-CCCeEEEEEeCCCeEEE
Q 003579 550 VRKFE--GHTDRITDFCFSEDGKWLLSSGMDGSLRIWDVILARQIDAI-HVDVSITALSLSP-NMDVLATAHVDQNGVYL 625 (809)
Q Consensus 550 ~~~~~--~h~~~I~~l~fspdg~~l~s~s~D~~I~vwd~~~~~~i~~~-~~~~~v~~l~~sp-dg~~lat~~~d~~~i~l 625 (809)
+..+. +....|+.+..||||+|||+.+.+|.|.+|++.+++.-... +....++.++|+| +...|+.++.++ .++=
T Consensus 466 l~~~~~~~~~~~I~~l~~SsdG~yiaa~~t~g~I~v~nl~~~~~~~l~~rln~~vTa~~~~~~~~~~lvvats~n-Qv~e 544 (691)
T KOG2048|consen 466 LKSIQSQAKCPSISRLVVSSDGNYIAAISTRGQIFVYNLETLESHLLKVRLNIDVTAAAFSPFVRNRLVVATSNN-QVFE 544 (691)
T ss_pred hhccccccCCCcceeEEEcCCCCEEEEEeccceEEEEEcccceeecchhccCcceeeeeccccccCcEEEEecCC-eEEE
Confidence 22222 34578999999999999999999999999999987665444 4557799999995 667788888887 5888
Q ss_pred eec
Q 003579 626 WVN 628 (809)
Q Consensus 626 W~~ 628 (809)
+++
T Consensus 545 fdi 547 (691)
T KOG2048|consen 545 FDI 547 (691)
T ss_pred Eec
Confidence 887
No 54
>cd00200 WD40 WD40 domain, found in a number of eukaryotic proteins that cover a wide variety of functions including adaptor/regulatory modules in signal transduction, pre-mRNA processing and cytoskeleton assembly; typically contains a GH dipeptide 11-24 residues from its N-terminus and the WD dipeptide at its C-terminus and is 40 residues long, hence the name WD40; between GH and WD lies a conserved core; serves as a stable propeller-like platform to which proteins can bind either stably or reversibly; forms a propeller-like structure with several blades where each blade is composed of a four-stranded anti-parallel b-sheet; instances with few detectable copies are hypothesized to form larger structures by dimerization; each WD40 sequence repeat forms the first three strands of one blade and the last strand in the next blade; the last C-terminal WD40 repeat completes the blade structure of the first WD40 repeat to create the closed ring propeller-structure; residues on the top and botto
Probab=100.00 E-value=3.8e-31 Score=273.55 Aligned_cols=285 Identities=23% Similarity=0.416 Sum_probs=251.3
Q ss_pred eeeecccccceEEEEEecCCCEEEEEcCCCcEEEEEeeCCCCCceeEEeccCCCCCCeeEEEecCCCEEEEEECCCCEEE
Q 003579 261 SVIREAHDNAIISLHFFANEPVLMSASADNSIKMWIFDTTDGDPRLLRFRSGHSAPPLCIRFYANGRHILSAGQDRAFRL 340 (809)
Q Consensus 261 ~~~~~~h~~~V~~l~~~~~~~~l~s~s~d~~i~vw~~~~~~~~~~~~~~~~~h~~~v~~i~~~~~~~~l~s~~~dg~i~~ 340 (809)
..+. +|.++|.+++|+|++++|++++.||.+++|+++... ......+|...+..+.|+++++.+++++.|+.+++
T Consensus 3 ~~~~-~h~~~i~~~~~~~~~~~l~~~~~~g~i~i~~~~~~~----~~~~~~~~~~~i~~~~~~~~~~~l~~~~~~~~i~i 77 (289)
T cd00200 3 RTLK-GHTGGVTCVAFSPDGKLLATGSGDGTIKVWDLETGE----LLRTLKGHTGPVRDVAASADGTYLASGSSDKTIRL 77 (289)
T ss_pred hHhc-ccCCCEEEEEEcCCCCEEEEeecCcEEEEEEeeCCC----cEEEEecCCcceeEEEECCCCCEEEEEcCCCeEEE
Confidence 3455 899999999999999999999999999999987653 45566789999999999999999999999999999
Q ss_pred EEeeecccceecchhhHHHHHhhccchhhhhccCceeEEeeccccccccceeEEeecCCceEEEEEeeeeeecceeeecC
Q 003579 341 FSVIQDQQSRELSQRHVAKRARKLKMKEEELKLKPVIAFDCAEIRERDWCNVVTCHMDTAQAYVWRLQNFVLGEHILRPC 420 (809)
Q Consensus 341 wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~ 420 (809)
|++........+.
T Consensus 78 ~~~~~~~~~~~~~------------------------------------------------------------------- 90 (289)
T cd00200 78 WDLETGECVRTLT------------------------------------------------------------------- 90 (289)
T ss_pred EEcCcccceEEEe-------------------------------------------------------------------
Confidence 9987543222211
Q ss_pred CCCCCCeEEEEEcCCCCEEEEEeCCCcEEEEECCCCceeeeeeCcccccccCccccEEEEEEcCCCCEEEEEeCcCeEEE
Q 003579 421 PENPTAVKACTISACGNFAVLGTAGGWIERFNLQSGISRGSYLDMSERSNYAHNGEVVGVACDSTNTLMISAGYHGDIKV 500 (809)
Q Consensus 421 ~~~~~~v~~v~~s~~g~~l~~g~~~g~i~i~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~l~s~~~dg~i~i 500 (809)
.+...+.++.++++++++++++.+|.+.+|++.++.....+. .|...+.+++++|+++++++++.||.|++
T Consensus 91 -~~~~~i~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~--------~~~~~i~~~~~~~~~~~l~~~~~~~~i~i 161 (289)
T cd00200 91 -GHTSYVSSVAFSPDGRILSSSSRDKTIKVWDVETGKCLTTLR--------GHTDWVNSVAFSPDGTFVASSSQDGTIKL 161 (289)
T ss_pred -ccCCcEEEEEEcCCCCEEEEecCCCeEEEEECCCcEEEEEec--------cCCCcEEEEEEcCcCCEEEEEcCCCcEEE
Confidence 234689999999999999999889999999999887777664 78899999999999999988888999999
Q ss_pred EECCCCceeeeeecC-CCeEEEEEeeCCCEEEEEeCCCeEEEEEcCCCeEEEEEecCCCCeeeEEECCCCCEEEEEeCCC
Q 003579 501 WDFKGRDLKSRWEVG-CSLVKIVYHRVNGLLATVADDLVIRLFDVVALRMVRKFEGHTDRITDFCFSEDGKWLLSSGMDG 579 (809)
Q Consensus 501 wd~~~~~~~~~~~~~-~~i~~~~~s~~~~~la~~~~d~~I~v~d~~~~~~~~~~~~h~~~I~~l~fspdg~~l~s~s~D~ 579 (809)
||+.+++....+..+ ..+.++.|+|+++.+++++.++.|++||+.+++.+..+.+|...|.+++|+|++.++++++.|+
T Consensus 162 ~d~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~~~~i~i~d~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~ 241 (289)
T cd00200 162 WDLRTGKCVATLTGHTGEVNSVAFSPDGEKLLSSSSDGTIKLWDLSTGKCLGTLRGHENGVNSVAFSPDGYLLASGSEDG 241 (289)
T ss_pred EEccccccceeEecCccccceEEECCCcCEEEEecCCCcEEEEECCCCceecchhhcCCceEEEEEcCCCcEEEEEcCCC
Confidence 999988888887766 5899999999999999999999999999999999999989999999999999999999988899
Q ss_pred eEEEEEcCCccEEEEeeeCc-ceEEEEEcCCCCeEEEEEeCCCeEEEee
Q 003579 580 SLRIWDVILARQIDAIHVDV-SITALSLSPNMDVLATAHVDQNGVYLWV 627 (809)
Q Consensus 580 ~I~vwd~~~~~~i~~~~~~~-~v~~l~~spdg~~lat~~~d~~~i~lW~ 627 (809)
.|++||+.+++.+..+..+. .+.+++|+|++.+|++++.|+ .|++|+
T Consensus 242 ~i~i~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d~-~i~iw~ 289 (289)
T cd00200 242 TIRVWDLRTGECVQTLSGHTNSVTSLAWSPDGKRLASGSADG-TIRIWD 289 (289)
T ss_pred cEEEEEcCCceeEEEccccCCcEEEEEECCCCCEEEEecCCC-eEEecC
Confidence 99999999999888887554 599999999999999999999 599996
No 55
>KOG0313 consensus Microtubule binding protein YTM1 (contains WD40 repeats) [Cytoskeleton]
Probab=100.00 E-value=1.2e-31 Score=256.14 Aligned_cols=306 Identities=22% Similarity=0.363 Sum_probs=244.7
Q ss_pred CCcEEEEEEecCCCCEEEEEcCCCcEEEEECCCceeeeeeecccccceEEEEEecCCC---EEEEEcCCCcEEEEEeeCC
Q 003579 224 RGAVTALAFSSDGQPLLASGASSGVISIWNLEKRRLQSVIREAHDNAIISLHFFANEP---VLMSASADNSIKMWIFDTT 300 (809)
Q Consensus 224 ~~~V~~l~fs~dg~~~lasg~~dg~I~iwdl~~~~~~~~~~~~h~~~V~~l~~~~~~~---~l~s~s~d~~i~vw~~~~~ 300 (809)
.+.|.++... ++ .+++|+.||.+++||. .|+...++. +|.++|.+++|..... .+++++.|.++++|.++.+
T Consensus 105 dDWVSsv~~~--~~-~IltgsYDg~~riWd~-~Gk~~~~~~-Ght~~ik~v~~v~~n~~~~~fvsas~Dqtl~Lw~~~~~ 179 (423)
T KOG0313|consen 105 DDWVSSVKGA--SK-WILTGSYDGTSRIWDL-KGKSIKTIV-GHTGPIKSVAWVIKNSSSCLFVSASMDQTLRLWKWNVG 179 (423)
T ss_pred hhhhhhhccc--Cc-eEEEeecCCeeEEEec-CCceEEEEe-cCCcceeeeEEEecCCccceEEEecCCceEEEEEecCc
Confidence 5788888877 44 7899999999999996 577777777 9999999888865444 5999999999999999988
Q ss_pred CCCceeEEeccCCCCCCeeEEEecCCCEEEEEECCCCEEEEEeeecccceecchhhHHHHHhhccchhhhhccCceeEEe
Q 003579 301 DGDPRLLRFRSGHSAPPLCIRFYANGRHILSAGQDRAFRLFSVIQDQQSRELSQRHVAKRARKLKMKEEELKLKPVIAFD 380 (809)
Q Consensus 301 ~~~~~~~~~~~~h~~~v~~i~~~~~~~~l~s~~~dg~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~ 380 (809)
......+....||...|.+++..++|..+++|+.|..|.+|+..... ..++......++.+......
T Consensus 180 ~~~~~~~~~~~GHk~~V~sVsv~~sgtr~~SgS~D~~lkiWs~~~~~-~~~~E~~s~~rrk~~~~~~~------------ 246 (423)
T KOG0313|consen 180 ENKVKALKVCRGHKRSVDSVSVDSSGTRFCSGSWDTMLKIWSVETDE-EDELESSSNRRRKKQKREKE------------ 246 (423)
T ss_pred hhhhhHHhHhcccccceeEEEecCCCCeEEeecccceeeecccCCCc-cccccccchhhhhhhhhhhc------------
Confidence 76666666777999999999999999999999999999999933221 11111111111110000000
Q ss_pred eccccccccceeEEeecCCceEEEEEeeeeeecceeeecCCCCCCCeEEEEEcCCCCEEEEEeCCCcEEEEECCCCceee
Q 003579 381 CAEIRERDWCNVVTCHMDTAQAYVWRLQNFVLGEHILRPCPENPTAVKACTISACGNFAVLGTAGGWIERFNLQSGISRG 460 (809)
Q Consensus 381 ~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~v~~v~~s~~g~~l~~g~~~g~i~i~~~~~~~~~~ 460 (809)
. ..+....
T Consensus 247 ----------------------------------------~--------------------------------~~r~P~v 254 (423)
T KOG0313|consen 247 ----------------------------------------G--------------------------------GTRTPLV 254 (423)
T ss_pred ----------------------------------------c--------------------------------cccCceE
Confidence 0 0011111
Q ss_pred eeeCcccccccCccccEEEEEEcCCCCEEEEEeCcCeEEEEECCCCceeeeeecCCCeEEEEEeeCCCEEEEEeCCCeEE
Q 003579 461 SYLDMSERSNYAHNGEVVGVACDSTNTLMISAGYHGDIKVWDFKGRDLKSRWEVGCSLVKIVYHRVNGLLATVADDLVIR 540 (809)
Q Consensus 461 ~~~~~~~~~~~~h~~~v~~l~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~i~~~~~s~~~~~la~~~~d~~I~ 540 (809)
. +.+|..+|.++.|++ ...+.+++.|.+|+.||+.++....++.....+.++.++|..++||+|+.|..|+
T Consensus 255 t--------l~GHt~~Vs~V~w~d-~~v~yS~SwDHTIk~WDletg~~~~~~~~~ksl~~i~~~~~~~Ll~~gssdr~ir 325 (423)
T KOG0313|consen 255 T--------LEGHTEPVSSVVWSD-ATVIYSVSWDHTIKVWDLETGGLKSTLTTNKSLNCISYSPLSKLLASGSSDRHIR 325 (423)
T ss_pred E--------ecccccceeeEEEcC-CCceEeecccceEEEEEeecccceeeeecCcceeEeecccccceeeecCCCCcee
Confidence 1 249999999999998 7789999999999999999999999999999999999999999999999999999
Q ss_pred EEEcCCC---eEEEEEecCCCCeeeEEECCCCC-EEEEEeCCCeEEEEEcCCcc-EEEEeeeCc-ceEEEEEcCCCCeEE
Q 003579 541 LFDVVAL---RMVRKFEGHTDRITDFCFSEDGK-WLLSSGMDGSLRIWDVILAR-QIDAIHVDV-SITALSLSPNMDVLA 614 (809)
Q Consensus 541 v~d~~~~---~~~~~~~~h~~~I~~l~fspdg~-~l~s~s~D~~I~vwd~~~~~-~i~~~~~~~-~v~~l~~spdg~~la 614 (809)
+||.+++ -...+|.||.+.|.++.|+|... .|++++.|+++++||+++.+ ++..+..|. .|.++.|+ ++.+++
T Consensus 326 l~DPR~~~gs~v~~s~~gH~nwVssvkwsp~~~~~~~S~S~D~t~klWDvRS~k~plydI~~h~DKvl~vdW~-~~~~Iv 404 (423)
T KOG0313|consen 326 LWDPRTGDGSVVSQSLIGHKNWVSSVKWSPTNEFQLVSGSYDNTVKLWDVRSTKAPLYDIAGHNDKVLSVDWN-EGGLIV 404 (423)
T ss_pred ecCCCCCCCceeEEeeecchhhhhheecCCCCceEEEEEecCCeEEEEEeccCCCcceeeccCCceEEEEecc-CCceEE
Confidence 9999876 34678999999999999999665 57899999999999999877 777666555 49999997 577999
Q ss_pred EEEeCCCeEEEeecCc
Q 003579 615 TAHVDQNGVYLWVNRC 630 (809)
Q Consensus 615 t~~~d~~~i~lW~~~~ 630 (809)
+|+.|. .|+++.-..
T Consensus 405 SGGaD~-~l~i~~~~~ 419 (423)
T KOG0313|consen 405 SGGADN-KLRIFKGSP 419 (423)
T ss_pred eccCcc-eEEEecccc
Confidence 999999 599987543
No 56
>KOG0282 consensus mRNA splicing factor [Function unknown]
Probab=100.00 E-value=4.7e-33 Score=273.96 Aligned_cols=290 Identities=18% Similarity=0.284 Sum_probs=245.0
Q ss_pred CceEEEEcCCCCCEEEEEEcC-CCCEEEEEeCCCeEEEEEeeC-CeEEEEEeccCCCcEEEEEEecCCCCEEEEEcCCCc
Q 003579 171 KKKLYEFKGWGSSISSCVSSP-ALDVVAVGCSDGKIHVHNVRY-DEELVTFTHSMRGAVTALAFSSDGQPLLASGASSGV 248 (809)
Q Consensus 171 ~~~~~~~~~~~~~I~~l~~sp-~~~~la~g~~dg~i~iwd~~~-~~~~~~~~~~~~~~V~~l~fs~dg~~~lasg~~dg~ 248 (809)
.+.++.+.+|+..|+++.|.| .+.+|++++.|+.|+|||+-. +++++++.+| ..+|.+++|+++|. -+.+++.|+.
T Consensus 204 kk~~~~~~gH~kgvsai~~fp~~~hLlLS~gmD~~vklW~vy~~~~~lrtf~gH-~k~Vrd~~~s~~g~-~fLS~sfD~~ 281 (503)
T KOG0282|consen 204 KKLSHNLSGHTKGVSAIQWFPKKGHLLLSGGMDGLVKLWNVYDDRRCLRTFKGH-RKPVRDASFNNCGT-SFLSASFDRF 281 (503)
T ss_pred HhheeeccCCccccchhhhccceeeEEEecCCCceEEEEEEecCcceehhhhcc-hhhhhhhhccccCC-eeeeeeccee
Confidence 457788999999999999999 899999999999999999987 6788888776 89999999999999 7889999999
Q ss_pred EEEEECCCceeeeeeecccccceEEEEEecCC-CEEEEEcCCCcEEEEEeeCCCCCceeEEeccCCCCCCeeEEEecCCC
Q 003579 249 ISIWNLEKRRLQSVIREAHDNAIISLHFFANE-PVLMSASADNSIKMWIFDTTDGDPRLLRFRSGHSAPPLCIRFYANGR 327 (809)
Q Consensus 249 I~iwdl~~~~~~~~~~~~h~~~V~~l~~~~~~-~~l~s~s~d~~i~vw~~~~~~~~~~~~~~~~~h~~~v~~i~~~~~~~ 327 (809)
|++||.++|+++..+. ....+.++.|.|++ +.+++|+.|+.|+.||++.+ .+++....|-+.|..+.|.++|+
T Consensus 282 lKlwDtETG~~~~~f~--~~~~~~cvkf~pd~~n~fl~G~sd~ki~~wDiRs~----kvvqeYd~hLg~i~~i~F~~~g~ 355 (503)
T KOG0282|consen 282 LKLWDTETGQVLSRFH--LDKVPTCVKFHPDNQNIFLVGGSDKKIRQWDIRSG----KVVQEYDRHLGAILDITFVDEGR 355 (503)
T ss_pred eeeeccccceEEEEEe--cCCCceeeecCCCCCcEEEEecCCCcEEEEeccch----HHHHHHHhhhhheeeeEEccCCc
Confidence 9999999999999987 45678999999998 79999999999999999877 57777888999999999999999
Q ss_pred EEEEEECCCCEEEEEeeecccceecchhhHHHHHhhccchhhhhccCceeEEeeccccccccceeEEeecCCceEEEEEe
Q 003579 328 HILSAGQDRAFRLFSVIQDQQSRELSQRHVAKRARKLKMKEEELKLKPVIAFDCAEIRERDWCNVVTCHMDTAQAYVWRL 407 (809)
Q Consensus 328 ~l~s~~~dg~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~ 407 (809)
++++.+.|+++++|+...+...+.+.
T Consensus 356 rFissSDdks~riWe~~~~v~ik~i~------------------------------------------------------ 381 (503)
T KOG0282|consen 356 RFISSSDDKSVRIWENRIPVPIKNIA------------------------------------------------------ 381 (503)
T ss_pred eEeeeccCccEEEEEcCCCccchhhc------------------------------------------------------
Confidence 99999999999999976543322110
Q ss_pred eeeeecceeeecCCCCCCCeEEEEEcCCCCEEEEEeCCCcEEEEECCCCceeeeeeCcccccccCccccEEEEEEcCCCC
Q 003579 408 QNFVLGEHILRPCPENPTAVKACTISACGNFAVLGTAGGWIERFNLQSGISRGSYLDMSERSNYAHNGEVVGVACDSTNT 487 (809)
Q Consensus 408 ~~~~~~~~~~~~~~~~~~~v~~v~~s~~g~~l~~g~~~g~i~i~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~ 487 (809)
..+.....++..+|++.
T Consensus 382 ---------------------------------------------------------------~~~~hsmP~~~~~P~~~ 398 (503)
T KOG0282|consen 382 ---------------------------------------------------------------DPEMHTMPCLTLHPNGK 398 (503)
T ss_pred ---------------------------------------------------------------chhhccCcceecCCCCC
Confidence 02223345666777777
Q ss_pred EEEEEeCcCeEEEEECCCCc---eeeeeec---CCCeEEEEEeeCCCEEEEEeCCCeEEEEEcCCCeEEEEEecCCCCee
Q 003579 488 LMISAGYHGDIKVWDFKGRD---LKSRWEV---GCSLVKIVYHRVNGLLATVADDLVIRLFDVVALRMVRKFEGHTDRIT 561 (809)
Q Consensus 488 ~l~s~~~dg~i~iwd~~~~~---~~~~~~~---~~~i~~~~~s~~~~~la~~~~d~~I~v~d~~~~~~~~~~~~h~~~I~ 561 (809)
+++.-+.|..|.++.+...- ....++. .+-...+.|||||++|++|..||.+.+||.++-+++..+++|.+++.
T Consensus 399 ~~~aQs~dN~i~ifs~~~~~r~nkkK~feGh~vaGys~~v~fSpDG~~l~SGdsdG~v~~wdwkt~kl~~~lkah~~~ci 478 (503)
T KOG0282|consen 399 WFAAQSMDNYIAIFSTVPPFRLNKKKRFEGHSVAGYSCQVDFSPDGRTLCSGDSDGKVNFWDWKTTKLVSKLKAHDQPCI 478 (503)
T ss_pred eehhhccCceEEEEecccccccCHhhhhcceeccCceeeEEEcCCCCeEEeecCCccEEEeechhhhhhhccccCCcceE
Confidence 77777777777777654321 1222222 25667899999999999999999999999999999999999999999
Q ss_pred eEEECCCC-CEEEEEeCCCeEEEEE
Q 003579 562 DFCFSEDG-KWLLSSGMDGSLRIWD 585 (809)
Q Consensus 562 ~l~fspdg-~~l~s~s~D~~I~vwd 585 (809)
.+.|+|.. ..+|||+.||.|++||
T Consensus 479 ~v~wHP~e~Skvat~~w~G~Ikiwd 503 (503)
T KOG0282|consen 479 GVDWHPVEPSKVATCGWDGLIKIWD 503 (503)
T ss_pred EEEecCCCcceeEecccCceeEecC
Confidence 99999954 5789999999999996
No 57
>KOG0266 consensus WD40 repeat-containing protein [General function prediction only]
Probab=100.00 E-value=1.8e-31 Score=289.26 Aligned_cols=290 Identities=22% Similarity=0.396 Sum_probs=253.8
Q ss_pred EEEeccCCCcEEEEEEecCCCCEEEEEcCCCcEEEEECCCce--eeeeeecccccceEEEEEecCCCEEEEEcCCCcEEE
Q 003579 217 VTFTHSMRGAVTALAFSSDGQPLLASGASSGVISIWNLEKRR--LQSVIREAHDNAIISLHFFANEPVLMSASADNSIKM 294 (809)
Q Consensus 217 ~~~~~~~~~~V~~l~fs~dg~~~lasg~~dg~I~iwdl~~~~--~~~~~~~~h~~~V~~l~~~~~~~~l~s~s~d~~i~v 294 (809)
..+..++...|.++.|+++|+ .+++++.++.+++|+....+ ....+. +|...|..++|+|++.++++++.|++|++
T Consensus 152 ~~~~~~~~~sv~~~~fs~~g~-~l~~~~~~~~i~~~~~~~~~~~~~~~l~-~h~~~v~~~~fs~d~~~l~s~s~D~tiri 229 (456)
T KOG0266|consen 152 QTLAGHECPSVTCVDFSPDGR-ALAAASSDGLIRIWKLEGIKSNLLRELS-GHTRGVSDVAFSPDGSYLLSGSDDKTLRI 229 (456)
T ss_pred eeecccccCceEEEEEcCCCC-eEEEccCCCcEEEeecccccchhhcccc-ccccceeeeEECCCCcEEEEecCCceEEE
Confidence 344444467899999999999 79999999999999998777 666665 89999999999999999999999999999
Q ss_pred EEeeCCCCCceeEEeccCCCCCCeeEEEecCCCEEEEEECCCCEEEEEeeecccceecchhhHHHHHhhccchhhhhccC
Q 003579 295 WIFDTTDGDPRLLRFRSGHSAPPLCIRFYANGRHILSAGQDRAFRLFSVIQDQQSRELSQRHVAKRARKLKMKEEELKLK 374 (809)
Q Consensus 295 w~~~~~~~~~~~~~~~~~h~~~v~~i~~~~~~~~l~s~~~dg~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 374 (809)
|++... ...++.+.+|...|++++|+|+|+.+++|+.|++|++||+++++....+.
T Consensus 230 wd~~~~---~~~~~~l~gH~~~v~~~~f~p~g~~i~Sgs~D~tvriWd~~~~~~~~~l~--------------------- 285 (456)
T KOG0266|consen 230 WDLKDD---GRNLKTLKGHSTYVTSVAFSPDGNLLVSGSDDGTVRIWDVRTGECVRKLK--------------------- 285 (456)
T ss_pred eeccCC---CeEEEEecCCCCceEEEEecCCCCEEEEecCCCcEEEEeccCCeEEEeee---------------------
Confidence 988222 26788889999999999999999999999999999999998765544432
Q ss_pred ceeEEeeccccccccceeEEeecCCceEEEEEeeeeeecceeeecCCCCCCCeEEEEEcCCCCEEEEEeCCCcEEEEECC
Q 003579 375 PVIAFDCAEIRERDWCNVVTCHMDTAQAYVWRLQNFVLGEHILRPCPENPTAVKACTISACGNFAVLGTAGGWIERFNLQ 454 (809)
Q Consensus 375 ~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~v~~v~~s~~g~~l~~g~~~g~i~i~~~~ 454 (809)
+|...|++++|+++|+++++++.||.|++||+.
T Consensus 286 -----------------------------------------------~hs~~is~~~f~~d~~~l~s~s~d~~i~vwd~~ 318 (456)
T KOG0266|consen 286 -----------------------------------------------GHSDGISGLAFSPDGNLLVSASYDGTIRVWDLE 318 (456)
T ss_pred -----------------------------------------------ccCCceEEEEECCCCCEEEEcCCCccEEEEECC
Confidence 466899999999999999999999999999999
Q ss_pred CCce--eeeeeCcccccccCccc--cEEEEEEcCCCCEEEEEeCcCeEEEEECCCCceeeeeecC-C---CeEEEEEeeC
Q 003579 455 SGIS--RGSYLDMSERSNYAHNG--EVVGVACDSTNTLMISAGYHGDIKVWDFKGRDLKSRWEVG-C---SLVKIVYHRV 526 (809)
Q Consensus 455 ~~~~--~~~~~~~~~~~~~~h~~--~v~~l~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~-~---~i~~~~~s~~ 526 (809)
++.. ...+. .+.. .++.++|+|+++++++++.|+.+++||+..+.....+..+ . .+.+...++.
T Consensus 319 ~~~~~~~~~~~--------~~~~~~~~~~~~fsp~~~~ll~~~~d~~~~~w~l~~~~~~~~~~~~~~~~~~~~~~~~~~~ 390 (456)
T KOG0266|consen 319 TGSKLCLKLLS--------GAENSAPVTSVQFSPNGKYLLSASLDRTLKLWDLRSGKSVGTYTGHSNLVRCIFSPTLSTG 390 (456)
T ss_pred CCceeeeeccc--------CCCCCCceeEEEECCCCcEEEEecCCCeEEEEEccCCcceeeecccCCcceeEecccccCC
Confidence 9994 34443 3433 5999999999999999999999999999999888888665 2 4455566789
Q ss_pred CCEEEEEeCCCeEEEEEcCCCeEEEEEecC-CCCeeeEEECCCCCEEEEEe--CCCeEEEEEcC
Q 003579 527 NGLLATVADDLVIRLFDVVALRMVRKFEGH-TDRITDFCFSEDGKWLLSSG--MDGSLRIWDVI 587 (809)
Q Consensus 527 ~~~la~~~~d~~I~v~d~~~~~~~~~~~~h-~~~I~~l~fspdg~~l~s~s--~D~~I~vwd~~ 587 (809)
+.++.+|+.|+.|++||+.++..+..+.+| ...+..+.++|...++++++ .|+.+++|..+
T Consensus 391 ~~~i~sg~~d~~v~~~~~~s~~~~~~l~~h~~~~~~~~~~~~~~~~~~s~s~~~d~~~~~w~~~ 454 (456)
T KOG0266|consen 391 GKLIYSGSEDGSVYVWDSSSGGILQRLEGHSKAAVSDLSSHPTENLIASSSFEGDGLIRLWKYD 454 (456)
T ss_pred CCeEEEEeCCceEEEEeCCccchhhhhcCCCCCceeccccCCCcCeeeecCcCCCceEEEecCC
Confidence 999999999999999999999999999999 89999999999999999998 79999999754
No 58
>KOG0268 consensus Sof1-like rRNA processing protein (contains WD40 repeats) [RNA processing and modification]
Probab=100.00 E-value=8.9e-34 Score=268.72 Aligned_cols=366 Identities=17% Similarity=0.254 Sum_probs=288.6
Q ss_pred EEEeccCCCcEEEEEEecCCCCEEEEEcCCCcEEEEECCCceeeeeeecccccceEEEEEecCCCEEEEEcCCCcEEEEE
Q 003579 217 VTFTHSMRGAVTALAFSSDGQPLLASGASSGVISIWNLEKRRLQSVIREAHDNAIISLHFFANEPVLMSASADNSIKMWI 296 (809)
Q Consensus 217 ~~~~~~~~~~V~~l~fs~dg~~~lasg~~dg~I~iwdl~~~~~~~~~~~~h~~~V~~l~~~~~~~~l~s~s~d~~i~vw~ 296 (809)
..+. +|.+.|.|++=+|.....+++|+.||.|+|||+.+..+...+. +|.+.|.++++.. ..++++|.|++|+.|.
T Consensus 60 ~~L~-gHrdGV~~lakhp~~ls~~aSGs~DG~VkiWnlsqR~~~~~f~-AH~G~V~Gi~v~~--~~~~tvgdDKtvK~wk 135 (433)
T KOG0268|consen 60 GSLD-GHRDGVSCLAKHPNKLSTVASGSCDGEVKIWNLSQRECIRTFK-AHEGLVRGICVTQ--TSFFTVGDDKTVKQWK 135 (433)
T ss_pred hhcc-ccccccchhhcCcchhhhhhccccCceEEEEehhhhhhhheee-cccCceeeEEecc--cceEEecCCcceeeee
Confidence 3443 3488899999999875589999999999999999999999999 9999999999987 5789999999999998
Q ss_pred eeCCCCCceeEEeccCCCCCCeeEEEecCCCEEEEEECCCCEEEEEeeecccceecchhhHHHHHhhccchhhhhccCce
Q 003579 297 FDTTDGDPRLLRFRSGHSAPPLCIRFYANGRHILSAGQDRAFRLFSVIQDQQSRELSQRHVAKRARKLKMKEEELKLKPV 376 (809)
Q Consensus 297 ~~~~~~~~~~~~~~~~h~~~v~~i~~~~~~~~l~s~~~dg~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i 376 (809)
++.. .++++.+ ...+..+..+..+..++|||.+ |.+||.....+...++
T Consensus 136 ~~~~-----p~~tilg-~s~~~gIdh~~~~~~FaTcGe~--i~IWD~~R~~Pv~sms----------------------- 184 (433)
T KOG0268|consen 136 IDGP-----PLHTILG-KSVYLGIDHHRKNSVFATCGEQ--IDIWDEQRDNPVSSMS----------------------- 184 (433)
T ss_pred ccCC-----cceeeec-cccccccccccccccccccCce--eeecccccCCccceee-----------------------
Confidence 7763 3333333 2335566666666677777764 7778765443322221
Q ss_pred eEEeeccccccccceeEEeecCCceEEEEEeeeeeecceeeecCCCCCCCeEEEEEcCCCCEEEEEeCCCcEEEEECCCC
Q 003579 377 IAFDCAEIRERDWCNVVTCHMDTAQAYVWRLQNFVLGEHILRPCPENPTAVKACTISACGNFAVLGTAGGWIERFNLQSG 456 (809)
Q Consensus 377 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~v~~v~~s~~g~~l~~g~~~g~i~i~~~~~~ 456 (809)
T Consensus 185 -------------------------------------------------------------------------------- 184 (433)
T KOG0268|consen 185 -------------------------------------------------------------------------------- 184 (433)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred ceeeeeeCcccccccCccccEEEEEEcCCC-CEEEEEeCcCeEEEEECCCCceeeeeecCCCeEEEEEeeCCCEEEEEeC
Q 003579 457 ISRGSYLDMSERSNYAHNGEVVGVACDSTN-TLMISAGYHGDIKVWDFKGRDLKSRWEVGCSLVKIVYHRVNGLLATVAD 535 (809)
Q Consensus 457 ~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~-~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~i~~~~~s~~~~~la~~~~ 535 (809)
--...|.++.|+|.. ..|++|+.|+.|.+||++++.+++.+......+.++|+|.+-.+.+|++
T Consensus 185 ---------------wG~Dti~svkfNpvETsILas~~sDrsIvLyD~R~~~Pl~KVi~~mRTN~IswnPeafnF~~a~E 249 (433)
T KOG0268|consen 185 ---------------WGADSISSVKFNPVETSILASCASDRSIVLYDLRQASPLKKVILTMRTNTICWNPEAFNFVAANE 249 (433)
T ss_pred ---------------cCCCceeEEecCCCcchheeeeccCCceEEEecccCCccceeeeeccccceecCccccceeeccc
Confidence 223557788888865 5677788999999999999999999999999999999998888999999
Q ss_pred CCeEEEEEcCCC-eEEEEEecCCCCeeeEEECCCCCEEEEEeCCCeEEEEEcCCccEEEEeeeCc--ceEEEEEcCCCCe
Q 003579 536 DLVIRLFDVVAL-RMVRKFEGHTDRITDFCFSEDGKWLLSSGMDGSLRIWDVILARQIDAIHVDV--SITALSLSPNMDV 612 (809)
Q Consensus 536 d~~I~v~d~~~~-~~~~~~~~h~~~I~~l~fspdg~~l~s~s~D~~I~vwd~~~~~~i~~~~~~~--~v~~l~~spdg~~ 612 (809)
|..++.||++.. +++....+|.+.|.+++|||.|+-+++||.|.+||||.+..+..-+.++... .|.++.||.|.+|
T Consensus 250 D~nlY~~DmR~l~~p~~v~~dhvsAV~dVdfsptG~EfvsgsyDksIRIf~~~~~~SRdiYhtkRMq~V~~Vk~S~Dsky 329 (433)
T KOG0268|consen 250 DHNLYTYDMRNLSRPLNVHKDHVSAVMDVDFSPTGQEFVSGSYDKSIRIFPVNHGHSRDIYHTKRMQHVFCVKYSMDSKY 329 (433)
T ss_pred cccceehhhhhhcccchhhcccceeEEEeccCCCcchhccccccceEEEeecCCCcchhhhhHhhhheeeEEEEeccccE
Confidence 999999999865 5678889999999999999999999999999999999999988877776543 4999999999999
Q ss_pred EEEEEeCCCeEEEeecCcccCCCCCCccCCCCCcceeecCCCccCcCCccCCCCCCCCCccCCCCCCCCCCCCCcccccc
Q 003579 613 LATAHVDQNGVYLWVNRCMFSGDSNIDSYASGKEIVSVKMPSVSSVEGCQDENSSQPDVHRTDRVPKDSFGLPTFKQQIP 692 (809)
Q Consensus 613 lat~~~d~~~i~lW~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 692 (809)
+++|+.|++ |+||.-++.-... .....|+..-+..|...+.|...++|..
T Consensus 330 i~SGSdd~n-vRlWka~Aseklg-----------------------------v~t~rEk~~~~Y~e~Lke~y~~~peIkR 379 (433)
T KOG0268|consen 330 IISGSDDGN-VRLWKAKASEKLG-----------------------------VITPREKNKLEYNEALKERYKHLPEIKR 379 (433)
T ss_pred EEecCCCcc-eeeeecchhhhcC-----------------------------CCChhHHHHHHHHHHHHHHHhhcHHHHH
Confidence 999999996 9999865321110 0111112222333444467777777765
Q ss_pred CceeccCCchhhHhhccchHhhhhhCCCCCCCCCCCCCCcccccCCCCCcccc
Q 003579 693 DLVTLSLLPKSQWQSLINLDIIKARNKPIEPPKKPEKAPFFLPSVPSLSGEIL 745 (809)
Q Consensus 693 ~l~tls~~p~~~~~~l~~l~~i~~r~kp~~~~~~~~~~pffl~~~~~~~~~~~ 745 (809)
+.....||+....++-...++++..+.+|+..+.++.| .|..++.+...+
T Consensus 380 -IarHR~lPk~i~~a~ki~r~~~~s~~rrea~~~~~~~~--~~y~~~~kk~vv 429 (433)
T KOG0268|consen 380 -IARHRHLPKPIKKAQKIKRTVNDSERRREANRRRHSKP--VPYAPERKKHIV 429 (433)
T ss_pred -HHhhccCCHHHHHHHHHHHHHHHHHHHHHHHHhhhcCC--CCcchhhcceee
Confidence 88899999999988888888888888888888888888 888887655443
No 59
>KOG0316 consensus Conserved WD40 repeat-containing protein [Function unknown]
Probab=100.00 E-value=2.9e-31 Score=237.18 Aligned_cols=285 Identities=20% Similarity=0.394 Sum_probs=243.8
Q ss_pred EEEEeccCCCcEEEEEEecCCCCEEEEEcCCCcEEEEECCCceeeeeeecccccceEEEEEecCCCEEEEEcCCCcEEEE
Q 003579 216 LVTFTHSMRGAVTALAFSSDGQPLLASGASSGVISIWNLEKRRLQSVIREAHDNAIISLHFFANEPVLMSASADNSIKMW 295 (809)
Q Consensus 216 ~~~~~~~~~~~V~~l~fs~dg~~~lasg~~dg~I~iwdl~~~~~~~~~~~~h~~~V~~l~~~~~~~~l~s~s~d~~i~vw 295 (809)
+..+..+ +++|.++.|+-||+ +.++++.|.+|++||...+.++++.. +|...|..++.+.|+..+++++.|..+.+|
T Consensus 10 ~~~l~~~-qgaV~avryN~dGn-Y~ltcGsdrtvrLWNp~rg~liktYs-ghG~EVlD~~~s~Dnskf~s~GgDk~v~vw 86 (307)
T KOG0316|consen 10 LSILDCA-QGAVRAVRYNVDGN-YCLTCGSDRTVRLWNPLRGALIKTYS-GHGHEVLDAALSSDNSKFASCGGDKAVQVW 86 (307)
T ss_pred ceeeccc-ccceEEEEEccCCC-EEEEcCCCceEEeecccccceeeeec-CCCceeeeccccccccccccCCCCceEEEE
Confidence 3344444 88999999999999 78888899999999999999999999 999999999999999999999999999999
Q ss_pred EeeCCCCCceeEEeccCCCCCCeeEEEecCCCEEEEEECCCCEEEEEeeecccceecchhhHHHHHhhccchhhhhccCc
Q 003579 296 IFDTTDGDPRLLRFRSGHSAPPLCIRFYANGRHILSAGQDRAFRLFSVIQDQQSRELSQRHVAKRARKLKMKEEELKLKP 375 (809)
Q Consensus 296 ~~~~~~~~~~~~~~~~~h~~~v~~i~~~~~~~~l~s~~~dg~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 375 (809)
|++++ +..+.+.+|.+.|+.++|+.+...+++|+.|.++++||.++.....
T Consensus 87 DV~TG----kv~Rr~rgH~aqVNtV~fNeesSVv~SgsfD~s~r~wDCRS~s~eP------------------------- 137 (307)
T KOG0316|consen 87 DVNTG----KVDRRFRGHLAQVNTVRFNEESSVVASGSFDSSVRLWDCRSRSFEP------------------------- 137 (307)
T ss_pred EcccC----eeeeecccccceeeEEEecCcceEEEeccccceeEEEEcccCCCCc-------------------------
Confidence 99887 7889999999999999999999999999999999999986543210
Q ss_pred eeEEeeccccccccceeEEeecCCceEEEEEeeeeeecceeeecCCCCCCCeEEEEEcCCCCEEEEEeCCCcEEEEECCC
Q 003579 376 VIAFDCAEIRERDWCNVVTCHMDTAQAYVWRLQNFVLGEHILRPCPENPTAVKACTISACGNFAVLGTAGGWIERFNLQS 455 (809)
Q Consensus 376 i~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~v~~v~~s~~g~~l~~g~~~g~i~i~~~~~ 455 (809)
| .++
T Consensus 138 ---------------------------------------------------i---------------------Qil---- 141 (307)
T KOG0316|consen 138 ---------------------------------------------------I---------------------QIL---- 141 (307)
T ss_pred ---------------------------------------------------c---------------------chh----
Confidence 0 000
Q ss_pred CceeeeeeCcccccccCccccEEEEEEcCCCCEEEEEeCcCeEEEEECCCCceeeeeecCCCeEEEEEeeCCCEEEEEeC
Q 003579 456 GISRGSYLDMSERSNYAHNGEVVGVACDSTNTLMISAGYHGDIKVWDFKGRDLKSRWEVGCSLVKIVYHRVNGLLATVAD 535 (809)
Q Consensus 456 ~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~i~~~~~s~~~~~la~~~~ 535 (809)
......|.++.+. +..+++|+.||+++.||++.|++...+ ...+|+++.|+++++...+++-
T Consensus 142 ---------------dea~D~V~Si~v~--~heIvaGS~DGtvRtydiR~G~l~sDy-~g~pit~vs~s~d~nc~La~~l 203 (307)
T KOG0316|consen 142 ---------------DEAKDGVSSIDVA--EHEIVAGSVDGTVRTYDIRKGTLSSDY-FGHPITSVSFSKDGNCSLASSL 203 (307)
T ss_pred ---------------hhhcCceeEEEec--ccEEEeeccCCcEEEEEeecceeehhh-cCCcceeEEecCCCCEEEEeec
Confidence 1334556666664 456889999999999999988765433 4579999999999999999999
Q ss_pred CCeEEEEEcCCCeEEEEEecCCCC--eeeEEECCCCCEEEEEeCCCeEEEEEcCCccEEEEeeeCcc--eEEEEEcCCCC
Q 003579 536 DLVIRLFDVVALRMVRKFEGHTDR--ITDFCFSEDGKWLLSSGMDGSLRIWDVILARQIDAIHVDVS--ITALSLSPNMD 611 (809)
Q Consensus 536 d~~I~v~d~~~~~~~~~~~~h~~~--I~~l~fspdg~~l~s~s~D~~I~vwd~~~~~~i~~~~~~~~--v~~l~~spdg~ 611 (809)
|+++++.|-.+|+++..++||.+. =.+.+++.....+++||+||.|++||+.++..+..+..++. +++++++|.-.
T Consensus 204 ~stlrLlDk~tGklL~sYkGhkn~eykldc~l~qsdthV~sgSEDG~Vy~wdLvd~~~~sk~~~~~~v~v~dl~~hp~~~ 283 (307)
T KOG0316|consen 204 DSTLRLLDKETGKLLKSYKGHKNMEYKLDCCLNQSDTHVFSGSEDGKVYFWDLVDETQISKLSVVSTVIVTDLSCHPTMD 283 (307)
T ss_pred cceeeecccchhHHHHHhcccccceeeeeeeecccceeEEeccCCceEEEEEeccceeeeeeccCCceeEEeeecccCcc
Confidence 999999999999999999999865 34567888888999999999999999999999999988775 79999999998
Q ss_pred eEEEEEeCCCeEEEeec
Q 003579 612 VLATAHVDQNGVYLWVN 628 (809)
Q Consensus 612 ~lat~~~d~~~i~lW~~ 628 (809)
.+.++...+ +..|.-
T Consensus 284 ~f~~A~~~~--~~~~~~ 298 (307)
T KOG0316|consen 284 DFITATGHG--DLFWYQ 298 (307)
T ss_pred ceeEecCCc--eeceee
Confidence 888887654 788863
No 60
>KOG0266 consensus WD40 repeat-containing protein [General function prediction only]
Probab=100.00 E-value=4.9e-31 Score=285.96 Aligned_cols=286 Identities=23% Similarity=0.417 Sum_probs=250.9
Q ss_pred ccccceEEEEEecCCCEEEEEcCCCcEEEEEeeCCCCCceeEEeccCCCCCCeeEEEecCCCEEEEEECCCCEEEEEeee
Q 003579 266 AHDNAIISLHFFANEPVLMSASADNSIKMWIFDTTDGDPRLLRFRSGHSAPPLCIRFYANGRHILSAGQDRAFRLFSVIQ 345 (809)
Q Consensus 266 ~h~~~V~~l~~~~~~~~l~s~s~d~~i~vw~~~~~~~~~~~~~~~~~h~~~v~~i~~~~~~~~l~s~~~dg~i~~wd~~~ 345 (809)
.|...|.++.|+++|..+++++.|+.+++|+...... ..++.+.+|...|.+++|+|+++++++++.|+++++||+..
T Consensus 157 ~~~~sv~~~~fs~~g~~l~~~~~~~~i~~~~~~~~~~--~~~~~l~~h~~~v~~~~fs~d~~~l~s~s~D~tiriwd~~~ 234 (456)
T KOG0266|consen 157 HECPSVTCVDFSPDGRALAAASSDGLIRIWKLEGIKS--NLLRELSGHTRGVSDVAFSPDGSYLLSGSDDKTLRIWDLKD 234 (456)
T ss_pred cccCceEEEEEcCCCCeEEEccCCCcEEEeecccccc--hhhccccccccceeeeEECCCCcEEEEecCCceEEEeeccC
Confidence 4478899999999999999999999999998854432 35666689999999999999999999999999999999833
Q ss_pred cccceecchhhHHHHHhhccchhhhhccCceeEEeeccccccccceeEEeecCCceEEEEEeeeeeecceeeecCCCCCC
Q 003579 346 DQQSRELSQRHVAKRARKLKMKEEELKLKPVIAFDCAEIRERDWCNVVTCHMDTAQAYVWRLQNFVLGEHILRPCPENPT 425 (809)
Q Consensus 346 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~ 425 (809)
.. ..+....+|..
T Consensus 235 ~~-------------------------------------------------------------------~~~~~l~gH~~ 247 (456)
T KOG0266|consen 235 DG-------------------------------------------------------------------RNLKTLKGHST 247 (456)
T ss_pred CC-------------------------------------------------------------------eEEEEecCCCC
Confidence 21 11222336789
Q ss_pred CeEEEEEcCCCCEEEEEeCCCcEEEEECCCCceeeeeeCcccccccCccccEEEEEEcCCCCEEEEEeCcCeEEEEECCC
Q 003579 426 AVKACTISACGNFAVLGTAGGWIERFNLQSGISRGSYLDMSERSNYAHNGEVVGVACDSTNTLMISAGYHGDIKVWDFKG 505 (809)
Q Consensus 426 ~v~~v~~s~~g~~l~~g~~~g~i~i~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~l~s~~~dg~i~iwd~~~ 505 (809)
.|++++|+|+|+.+++|+.|+.|++||+.++.....+. +|...|++++|++++.++++++.|+.|++||+.+
T Consensus 248 ~v~~~~f~p~g~~i~Sgs~D~tvriWd~~~~~~~~~l~--------~hs~~is~~~f~~d~~~l~s~s~d~~i~vwd~~~ 319 (456)
T KOG0266|consen 248 YVTSVAFSPDGNLLVSGSDDGTVRIWDVRTGECVRKLK--------GHSDGISGLAFSPDGNLLVSASYDGTIRVWDLET 319 (456)
T ss_pred ceEEEEecCCCCEEEEecCCCcEEEEeccCCeEEEeee--------ccCCceEEEEECCCCCEEEEcCCCccEEEEECCC
Confidence 99999999999999999999999999999999999886 9999999999999999999999999999999999
Q ss_pred Cc--eeeeeecC--C-CeEEEEEeeCCCEEEEEeCCCeEEEEEcCCCeEEEEEecCCCC---eeeEEECCCCCEEEEEeC
Q 003579 506 RD--LKSRWEVG--C-SLVKIVYHRVNGLLATVADDLVIRLFDVVALRMVRKFEGHTDR---ITDFCFSEDGKWLLSSGM 577 (809)
Q Consensus 506 ~~--~~~~~~~~--~-~i~~~~~s~~~~~la~~~~d~~I~v~d~~~~~~~~~~~~h~~~---I~~l~fspdg~~l~s~s~ 577 (809)
+. +...+... . +++++.|+|++.++++++.|+.+++||+..++.+..+.+|... +.+..+++.++++++++.
T Consensus 320 ~~~~~~~~~~~~~~~~~~~~~~fsp~~~~ll~~~~d~~~~~w~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~sg~~ 399 (456)
T KOG0266|consen 320 GSKLCLKLLSGAENSAPVTSVQFSPNGKYLLSASLDRTLKLWDLRSGKSVGTYTGHSNLVRCIFSPTLSTGGKLIYSGSE 399 (456)
T ss_pred CceeeeecccCCCCCCceeEEEECCCCcEEEEecCCCeEEEEEccCCcceeeecccCCcceeEecccccCCCCeEEEEeC
Confidence 99 44555443 2 6899999999999999999999999999999999999999874 445566889999999999
Q ss_pred CCeEEEEEcCCccEEEEeeeC--cceEEEEEcCCCCeEEEEE--eCCCeEEEeecC
Q 003579 578 DGSLRIWDVILARQIDAIHVD--VSITALSLSPNMDVLATAH--VDQNGVYLWVNR 629 (809)
Q Consensus 578 D~~I~vwd~~~~~~i~~~~~~--~~v~~l~~spdg~~lat~~--~d~~~i~lW~~~ 629 (809)
|+.|++||+.++..+..+..| ..+..+.++|...++++++ .|+ .+++|..+
T Consensus 400 d~~v~~~~~~s~~~~~~l~~h~~~~~~~~~~~~~~~~~~s~s~~~d~-~~~~w~~~ 454 (456)
T KOG0266|consen 400 DGSVYVWDSSSGGILQRLEGHSKAAVSDLSSHPTENLIASSSFEGDG-LIRLWKYD 454 (456)
T ss_pred CceEEEEeCCccchhhhhcCCCCCceeccccCCCcCeeeecCcCCCc-eEEEecCC
Confidence 999999999999999888887 4589999999999999998 566 59999754
No 61
>PLN00181 protein SPA1-RELATED; Provisional
Probab=100.00 E-value=2.3e-30 Score=302.76 Aligned_cols=301 Identities=15% Similarity=0.272 Sum_probs=238.6
Q ss_pred CCeEEEEeCCCCceEEEE-----cCCCCCEEEEEEcCCCCEEEEEeCCCeEEEEEeeCC----e----EEEEEeccCCCc
Q 003579 160 EGSLQLWNISTKKKLYEF-----KGWGSSISSCVSSPALDVVAVGCSDGKIHVHNVRYD----E----ELVTFTHSMRGA 226 (809)
Q Consensus 160 dg~i~lwd~~~~~~~~~~-----~~~~~~I~~l~~sp~~~~la~g~~dg~i~iwd~~~~----~----~~~~~~~~~~~~ 226 (809)
+|.+++|+..+.+....+ ..|...|.+++|+|+++++|+|+.|+.|+|||+... . ....+.. ...
T Consensus 457 ~gl~~~~~~~~~~~~~~~~~~~~~~~~~~V~~i~fs~dg~~latgg~D~~I~iwd~~~~~~~~~~~~~~~~~~~~--~~~ 534 (793)
T PLN00181 457 EGLCKYLSFSKLRVKADLKQGDLLNSSNLVCAIGFDRDGEFFATAGVNKKIKIFECESIIKDGRDIHYPVVELAS--RSK 534 (793)
T ss_pred hhhhhhhcccceEEEEeeccccccCCCCcEEEEEECCCCCEEEEEeCCCEEEEEECCcccccccccccceEEecc--cCc
Confidence 567888888776654443 358999999999999999999999999999997532 1 1222322 467
Q ss_pred EEEEEEecCCCCEEEEEcCCCcEEEEECCCceeeeeeecccccceEEEEEec-CCCEEEEEcCCCcEEEEEeeCCCCCce
Q 003579 227 VTALAFSSDGQPLLASGASSGVISIWNLEKRRLQSVIREAHDNAIISLHFFA-NEPVLMSASADNSIKMWIFDTTDGDPR 305 (809)
Q Consensus 227 V~~l~fs~dg~~~lasg~~dg~I~iwdl~~~~~~~~~~~~h~~~V~~l~~~~-~~~~l~s~s~d~~i~vw~~~~~~~~~~ 305 (809)
+.+++|++....+|++++.||.|++||+.+++.+..+. +|.+.|++++|+| ++.+|++|+.|+.|++||+... .
T Consensus 535 v~~l~~~~~~~~~las~~~Dg~v~lWd~~~~~~~~~~~-~H~~~V~~l~~~p~~~~~L~Sgs~Dg~v~iWd~~~~----~ 609 (793)
T PLN00181 535 LSGICWNSYIKSQVASSNFEGVVQVWDVARSQLVTEMK-EHEKRVWSIDYSSADPTLLASGSDDGSVKLWSINQG----V 609 (793)
T ss_pred eeeEEeccCCCCEEEEEeCCCeEEEEECCCCeEEEEec-CCCCCEEEEEEcCCCCCEEEEEcCCCEEEEEECCCC----c
Confidence 99999998644489999999999999999999888887 8999999999997 7889999999999999998754 3
Q ss_pred eEEeccCCCCCCeeEEEec-CCCEEEEEECCCCEEEEEeeecccceecchhhHHHHHhhccchhhhhccCceeEEeeccc
Q 003579 306 LLRFRSGHSAPPLCIRFYA-NGRHILSAGQDRAFRLFSVIQDQQSRELSQRHVAKRARKLKMKEEELKLKPVIAFDCAEI 384 (809)
Q Consensus 306 ~~~~~~~h~~~v~~i~~~~-~~~~l~s~~~dg~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~ 384 (809)
.+..+..+ ..+.++.|.+ +|.+|++|+.||.|++||++.....
T Consensus 610 ~~~~~~~~-~~v~~v~~~~~~g~~latgs~dg~I~iwD~~~~~~~----------------------------------- 653 (793)
T PLN00181 610 SIGTIKTK-ANICCVQFPSESGRSLAFGSADHKVYYYDLRNPKLP----------------------------------- 653 (793)
T ss_pred EEEEEecC-CCeEEEEEeCCCCCEEEEEeCCCeEEEEECCCCCcc-----------------------------------
Confidence 34444433 5788888854 7888999999999999987532100
Q ss_pred cccccceeEEeecCCceEEEEEeeeeeecceeeecCCCCCCCeEEEEEcCCCCEEEEEeCCCcEEEEECCCCceeeeeeC
Q 003579 385 RERDWCNVVTCHMDTAQAYVWRLQNFVLGEHILRPCPENPTAVKACTISACGNFAVLGTAGGWIERFNLQSGISRGSYLD 464 (809)
Q Consensus 385 ~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~v~~v~~s~~g~~l~~g~~~g~i~i~~~~~~~~~~~~~~ 464 (809)
...+
T Consensus 654 --------------------------------------------------------------------------~~~~-- 657 (793)
T PLN00181 654 --------------------------------------------------------------------------LCTM-- 657 (793)
T ss_pred --------------------------------------------------------------------------ceEe--
Confidence 0001
Q ss_pred cccccccCccccEEEEEEcCCCCEEEEEeCcCeEEEEECCCC------ceeeeeecC-CCeEEEEEeeCCCEEEEEeCCC
Q 003579 465 MSERSNYAHNGEVVGVACDSTNTLMISAGYHGDIKVWDFKGR------DLKSRWEVG-CSLVKIVYHRVNGLLATVADDL 537 (809)
Q Consensus 465 ~~~~~~~~h~~~v~~l~~~~~~~~l~s~~~dg~i~iwd~~~~------~~~~~~~~~-~~i~~~~~s~~~~~la~~~~d~ 537 (809)
.+|...|.++.|. ++.++++++.|+.|++||+..+ .++..+..+ ..+..++|++++.+||+|+.|+
T Consensus 658 ------~~h~~~V~~v~f~-~~~~lvs~s~D~~ikiWd~~~~~~~~~~~~l~~~~gh~~~i~~v~~s~~~~~lasgs~D~ 730 (793)
T PLN00181 658 ------IGHSKTVSYVRFV-DSSTLVSSSTDNTLKLWDLSMSISGINETPLHSFMGHTNVKNFVGLSVSDGYIATGSETN 730 (793)
T ss_pred ------cCCCCCEEEEEEe-CCCEEEEEECCCEEEEEeCCCCccccCCcceEEEcCCCCCeeEEEEcCCCCEEEEEeCCC
Confidence 2788888889886 6778999999999999998743 455566544 6788999999999999999999
Q ss_pred eEEEEEcCCCeEEEEE-------------ecCCCCeeeEEECCCCCEEEEEeCCCeEEEEEc
Q 003579 538 VIRLFDVVALRMVRKF-------------EGHTDRITDFCFSEDGKWLLSSGMDGSLRIWDV 586 (809)
Q Consensus 538 ~I~v~d~~~~~~~~~~-------------~~h~~~I~~l~fspdg~~l~s~s~D~~I~vwd~ 586 (809)
.|++|+......+..+ ..|...|.+++|+|++..|++|+.||.|+||++
T Consensus 731 ~v~iw~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~V~~v~ws~~~~~lva~~~dG~I~i~~~ 792 (793)
T PLN00181 731 EVFVYHKAFPMPVLSYKFKTIDPVSGLEVDDASQFISSVCWRGQSSTLVAANSTGNIKILEM 792 (793)
T ss_pred EEEEEECCCCCceEEEecccCCcccccccCCCCcEEEEEEEcCCCCeEEEecCCCcEEEEec
Confidence 9999998765443222 235567999999999999999999999999996
No 62
>KOG0281 consensus Beta-TrCP (transducin repeats containing)/Slimb proteins [Function unknown]
Probab=100.00 E-value=6.9e-33 Score=260.72 Aligned_cols=286 Identities=22% Similarity=0.371 Sum_probs=212.7
Q ss_pred CCCEEEEEEcCCCCEEEEEeCCCeEEEEEeeCCeEEEEEeccCCCcEEEEEEecCCCCEEEEEcCCCcEEEEECCCceee
Q 003579 181 GSSISSCVSSPALDVVAVGCSDGKIHVHNVRYDEELVTFTHSMRGAVTALAFSSDGQPLLASGASSGVISIWNLEKRRLQ 260 (809)
Q Consensus 181 ~~~I~~l~~sp~~~~la~g~~dg~i~iwd~~~~~~~~~~~~~~~~~V~~l~fs~dg~~~lasg~~dg~I~iwdl~~~~~~ 260 (809)
...|.|+.+.. ..+++|..|.+|+|||..+-.++..+.+| .+.|.|+.|.. + ++++|+.|.+|++||.++++++
T Consensus 197 skgVYClQYDD--~kiVSGlrDnTikiWD~n~~~c~~~L~GH-tGSVLCLqyd~--r-viisGSSDsTvrvWDv~tge~l 270 (499)
T KOG0281|consen 197 SKGVYCLQYDD--EKIVSGLRDNTIKIWDKNSLECLKILTGH-TGSVLCLQYDE--R-VIVSGSSDSTVRVWDVNTGEPL 270 (499)
T ss_pred CCceEEEEecc--hhhhcccccCceEEeccccHHHHHhhhcC-CCcEEeeeccc--e-EEEecCCCceEEEEeccCCchh
Confidence 56789998864 46999999999999999998888888876 89999999964 4 8999999999999999999999
Q ss_pred eeeecccccceEEEEEecCCCEEEEEcCCCcEEEEEeeCCCCCceeEEeccCCCCCCeeEEEecCCCEEEEEECCCCEEE
Q 003579 261 SVIREAHDNAIISLHFFANEPVLMSASADNSIKMWIFDTTDGDPRLLRFRSGHSAPPLCIRFYANGRHILSAGQDRAFRL 340 (809)
Q Consensus 261 ~~~~~~h~~~V~~l~~~~~~~~l~s~s~d~~i~vw~~~~~~~~~~~~~~~~~h~~~v~~i~~~~~~~~l~s~~~dg~i~~ 340 (809)
.++- +|...|..+.|+. .++++++.|.++.+|++..+. ...+.+.+.||.+.|+.+.|+ .+++++++.|++|++
T Consensus 271 ~tli-hHceaVLhlrf~n--g~mvtcSkDrsiaVWdm~sps-~it~rrVLvGHrAaVNvVdfd--~kyIVsASgDRTikv 344 (499)
T KOG0281|consen 271 NTLI-HHCEAVLHLRFSN--GYMVTCSKDRSIAVWDMASPT-DITLRRVLVGHRAAVNVVDFD--DKYIVSASGDRTIKV 344 (499)
T ss_pred hHHh-hhcceeEEEEEeC--CEEEEecCCceeEEEeccCch-HHHHHHHHhhhhhheeeeccc--cceEEEecCCceEEE
Confidence 9998 8999999999974 489999999999999998876 445667778999999999996 569999999999999
Q ss_pred EEeeecccceecchhhHHHHHhhccchhhhhccCceeEEeeccccccccceeEEeecCCceEEEEEeeeeeecceeeecC
Q 003579 341 FSVIQDQQSRELSQRHVAKRARKLKMKEEELKLKPVIAFDCAEIRERDWCNVVTCHMDTAQAYVWRLQNFVLGEHILRPC 420 (809)
Q Consensus 341 wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~ 420 (809)
|++.+....+.+.
T Consensus 345 W~~st~efvRtl~------------------------------------------------------------------- 357 (499)
T KOG0281|consen 345 WSTSTCEFVRTLN------------------------------------------------------------------- 357 (499)
T ss_pred Eeccceeeehhhh-------------------------------------------------------------------
Confidence 9987765544332
Q ss_pred CCCCCCeEEEEEcCCCCEEEEEeCCCcEEEEECCCCceeeeeeCcccccccCccccEEEEEEcCCCCEEEEEeCcCeEEE
Q 003579 421 PENPTAVKACTISACGNFAVLGTAGGWIERFNLQSGISRGSYLDMSERSNYAHNGEVVGVACDSTNTLMISAGYHGDIKV 500 (809)
Q Consensus 421 ~~~~~~v~~v~~s~~g~~l~~g~~~g~i~i~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~l~s~~~dg~i~i 500 (809)
+|...|.|+.+ .|+++++|++|.+|++||+..|.....+. +|..-|.++.| +++.+++|+.||+|++
T Consensus 358 -gHkRGIAClQY--r~rlvVSGSSDntIRlwdi~~G~cLRvLe--------GHEeLvRciRF--d~krIVSGaYDGkikv 424 (499)
T KOG0281|consen 358 -GHKRGIACLQY--RDRLVVSGSSDNTIRLWDIECGACLRVLE--------GHEELVRCIRF--DNKRIVSGAYDGKIKV 424 (499)
T ss_pred -cccccceehhc--cCeEEEecCCCceEEEEeccccHHHHHHh--------chHHhhhheee--cCceeeeccccceEEE
Confidence 22233333322 34555555555555555555555555443 55555555555 3555555555555555
Q ss_pred EECCCCceeeeeecCCCeEEEEEeeCCCEEEEEeCCCeEEEEEcCCCeEEEEEecCCCCeeeEEECCCCCEEEEEeCCCe
Q 003579 501 WDFKGRDLKSRWEVGCSLVKIVYHRVNGLLATVADDLVIRLFDVVALRMVRKFEGHTDRITDFCFSEDGKWLLSSGMDGS 580 (809)
Q Consensus 501 wd~~~~~~~~~~~~~~~i~~~~~s~~~~~la~~~~d~~I~v~d~~~~~~~~~~~~h~~~I~~l~fspdg~~l~s~s~D~~ 580 (809)
||+..+...+. + .+.-++..+..|+++|..+.| |...+++++.|.+
T Consensus 425 Wdl~aaldpra-----~---------------------------~~~~Cl~~lv~hsgRVFrLQF--D~fqIvsssHddt 470 (499)
T KOG0281|consen 425 WDLQAALDPRA-----P---------------------------ASTLCLRTLVEHSGRVFRLQF--DEFQIISSSHDDT 470 (499)
T ss_pred EecccccCCcc-----c---------------------------ccchHHHhhhhccceeEEEee--cceEEEeccCCCe
Confidence 55443321100 0 001134556679999999999 5668999999999
Q ss_pred EEEEEcCCccEE
Q 003579 581 LRIWDVILARQI 592 (809)
Q Consensus 581 I~vwd~~~~~~i 592 (809)
|.|||..++..-
T Consensus 471 ILiWdFl~~~~~ 482 (499)
T KOG0281|consen 471 ILIWDFLNGPPS 482 (499)
T ss_pred EEEEEcCCCCcc
Confidence 999999887544
No 63
>KOG0281 consensus Beta-TrCP (transducin repeats containing)/Slimb proteins [Function unknown]
Probab=100.00 E-value=1.6e-32 Score=258.19 Aligned_cols=270 Identities=21% Similarity=0.383 Sum_probs=228.5
Q ss_pred CCcEEEEEEecCCCCEEEEEcCCCcEEEEECCCceeeeeeecccccceEEEEEecCCCEEEEEcCCCcEEEEEeeCCCCC
Q 003579 224 RGAVTALAFSSDGQPLLASGASSGVISIWNLEKRRLQSVIREAHDNAIISLHFFANEPVLMSASADNSIKMWIFDTTDGD 303 (809)
Q Consensus 224 ~~~V~~l~fs~dg~~~lasg~~dg~I~iwdl~~~~~~~~~~~~h~~~V~~l~~~~~~~~l~s~s~d~~i~vw~~~~~~~~ 303 (809)
...|+|+.+.. + .+++|..|.+|+|||.++..++..+. +|++.|.|+.|. .+.+++|+.|.+|++||++++
T Consensus 197 skgVYClQYDD-~--kiVSGlrDnTikiWD~n~~~c~~~L~-GHtGSVLCLqyd--~rviisGSSDsTvrvWDv~tg--- 267 (499)
T KOG0281|consen 197 SKGVYCLQYDD-E--KIVSGLRDNTIKIWDKNSLECLKILT-GHTGSVLCLQYD--ERVIVSGSSDSTVRVWDVNTG--- 267 (499)
T ss_pred CCceEEEEecc-h--hhhcccccCceEEeccccHHHHHhhh-cCCCcEEeeecc--ceEEEecCCCceEEEEeccCC---
Confidence 45799999863 3 58999999999999999999999998 999999999985 569999999999999999887
Q ss_pred ceeEEeccCCCCCCeeEEEecCCCEEEEEECCCCEEEEEeeecccceecchhhHHHHHhhccchhhhhccCceeEEeecc
Q 003579 304 PRLLRFRSGHSAPPLCIRFYANGRHILSAGQDRAFRLFSVIQDQQSRELSQRHVAKRARKLKMKEEELKLKPVIAFDCAE 383 (809)
Q Consensus 304 ~~~~~~~~~h~~~v~~i~~~~~~~~l~s~~~dg~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~ 383 (809)
+++..+-+|...|..+.|+ ..++++++.|+++.+||+.......-
T Consensus 268 -e~l~tlihHceaVLhlrf~--ng~mvtcSkDrsiaVWdm~sps~it~-------------------------------- 312 (499)
T KOG0281|consen 268 -EPLNTLIHHCEAVLHLRFS--NGYMVTCSKDRSIAVWDMASPTDITL-------------------------------- 312 (499)
T ss_pred -chhhHHhhhcceeEEEEEe--CCEEEEecCCceeEEEeccCchHHHH--------------------------------
Confidence 6778888999999999997 44999999999999999865431110
Q ss_pred ccccccceeEEeecCCceEEEEEeeeeeecceeeecCCCCCCCeEEEEEcCCCCEEEEEeCCCcEEEEECCCCceeeeee
Q 003579 384 IRERDWCNVVTCHMDTAQAYVWRLQNFVLGEHILRPCPENPTAVKACTISACGNFAVLGTAGGWIERFNLQSGISRGSYL 463 (809)
Q Consensus 384 ~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~v~~v~~s~~g~~l~~g~~~g~i~i~~~~~~~~~~~~~ 463 (809)
+..
T Consensus 313 ---------------------------------------------------------------------------rrV-- 315 (499)
T KOG0281|consen 313 ---------------------------------------------------------------------------RRV-- 315 (499)
T ss_pred ---------------------------------------------------------------------------HHH--
Confidence 000
Q ss_pred CcccccccCccccEEEEEEcCCCCEEEEEeCcCeEEEEECCCCceeeeeecC-CCeEEEEEeeCCCEEEEEeCCCeEEEE
Q 003579 464 DMSERSNYAHNGEVVGVACDSTNTLMISAGYHGDIKVWDFKGRDLKSRWEVG-CSLVKIVYHRVNGLLATVADDLVIRLF 542 (809)
Q Consensus 464 ~~~~~~~~~h~~~v~~l~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~-~~i~~~~~s~~~~~la~~~~d~~I~v~ 542 (809)
+.+|..+|+.+.|+ .+++++++.|.+|++|++.+++.++++..+ ..|.|+.+. ++++++|+.|.+|++|
T Consensus 316 ------LvGHrAaVNvVdfd--~kyIVsASgDRTikvW~~st~efvRtl~gHkRGIAClQYr--~rlvVSGSSDntIRlw 385 (499)
T KOG0281|consen 316 ------LVGHRAAVNVVDFD--DKYIVSASGDRTIKVWSTSTCEFVRTLNGHKRGIACLQYR--DRLVVSGSSDNTIRLW 385 (499)
T ss_pred ------Hhhhhhheeeeccc--cceEEEecCCceEEEEeccceeeehhhhcccccceehhcc--CeEEEecCCCceEEEE
Confidence 13899999999886 459999999999999999999999999877 678777774 8999999999999999
Q ss_pred EcCCCeEEEEEecCCCCeeeEEECCCCCEEEEEeCCCeEEEEEcCCccEE---------EEe-eeCcceEEEEEcCCCCe
Q 003579 543 DVVALRMVRKFEGHTDRITDFCFSEDGKWLLSSGMDGSLRIWDVILARQI---------DAI-HVDVSITALSLSPNMDV 612 (809)
Q Consensus 543 d~~~~~~~~~~~~h~~~I~~l~fspdg~~l~s~s~D~~I~vwd~~~~~~i---------~~~-~~~~~v~~l~~spdg~~ 612 (809)
|++.|.+++.++||..-|.++.| |.+.+++|+.||+|+|||+..+..- ... ++...|..+.| |...
T Consensus 386 di~~G~cLRvLeGHEeLvRciRF--d~krIVSGaYDGkikvWdl~aaldpra~~~~~Cl~~lv~hsgRVFrLQF--D~fq 461 (499)
T KOG0281|consen 386 DIECGACLRVLEGHEELVRCIRF--DNKRIVSGAYDGKIKVWDLQAALDPRAPASTLCLRTLVEHSGRVFRLQF--DEFQ 461 (499)
T ss_pred eccccHHHHHHhchHHhhhheee--cCceeeeccccceEEEEecccccCCcccccchHHHhhhhccceeEEEee--cceE
Confidence 99999999999999999999999 5678999999999999999876422 222 23446999999 5667
Q ss_pred EEEEEeCCCeEEEeecC
Q 003579 613 LATAHVDQNGVYLWVNR 629 (809)
Q Consensus 613 lat~~~d~~~i~lW~~~ 629 (809)
+++++.|. +|-+|+.-
T Consensus 462 IvsssHdd-tILiWdFl 477 (499)
T KOG0281|consen 462 IISSSHDD-TILIWDFL 477 (499)
T ss_pred EEeccCCC-eEEEEEcC
Confidence 77777777 69999953
No 64
>KOG0316 consensus Conserved WD40 repeat-containing protein [Function unknown]
Probab=100.00 E-value=2.6e-30 Score=231.11 Aligned_cols=284 Identities=15% Similarity=0.219 Sum_probs=246.5
Q ss_pred eEEEEcCCCCCEEEEEEcCCCCEEEEEeCCCeEEEEEeeCCeEEEEEeccCCCcEEEEEEecCCCCEEEEEcCCCcEEEE
Q 003579 173 KLYEFKGWGSSISSCVSSPALDVVAVGCSDGKIHVHNVRYDEELVTFTHSMRGAVTALAFSSDGQPLLASGASSGVISIW 252 (809)
Q Consensus 173 ~~~~~~~~~~~I~~l~~sp~~~~la~g~~dg~i~iwd~~~~~~~~~~~~~~~~~V~~l~fs~dg~~~lasg~~dg~I~iw 252 (809)
..+.+..++++|.++.|.-+|+|.++++.|.+|++||...+..++++..| ...|..++.+.|+. -+++|+.|..+.+|
T Consensus 9 r~~~l~~~qgaV~avryN~dGnY~ltcGsdrtvrLWNp~rg~liktYsgh-G~EVlD~~~s~Dns-kf~s~GgDk~v~vw 86 (307)
T KOG0316|consen 9 RLSILDCAQGAVRAVRYNVDGNYCLTCGSDRTVRLWNPLRGALIKTYSGH-GHEVLDAALSSDNS-KFASCGGDKAVQVW 86 (307)
T ss_pred hceeecccccceEEEEEccCCCEEEEcCCCceEEeecccccceeeeecCC-Cceeeecccccccc-ccccCCCCceEEEE
Confidence 45677899999999999999999999999999999999999999999887 77899999999988 78999999999999
Q ss_pred ECCCceeeeeeecccccceEEEEEecCCCEEEEEcCCCcEEEEEeeCCCCCceeEEeccCCCCCCeeEEEecCCCEEEEE
Q 003579 253 NLEKRRLQSVIREAHDNAIISLHFFANEPVLMSASADNSIKMWIFDTTDGDPRLLRFRSGHSAPPLCIRFYANGRHILSA 332 (809)
Q Consensus 253 dl~~~~~~~~~~~~h~~~V~~l~~~~~~~~l~s~s~d~~i~vw~~~~~~~~~~~~~~~~~h~~~v~~i~~~~~~~~l~s~ 332 (809)
|+++|+..+.++ +|.+.|+.+.|+.+...+++|+.|.++++||-..... .+++.+......|.++... +..|+.|
T Consensus 87 DV~TGkv~Rr~r-gH~aqVNtV~fNeesSVv~SgsfD~s~r~wDCRS~s~--ePiQildea~D~V~Si~v~--~heIvaG 161 (307)
T KOG0316|consen 87 DVNTGKVDRRFR-GHLAQVNTVRFNEESSVVASGSFDSSVRLWDCRSRSF--EPIQILDEAKDGVSSIDVA--EHEIVAG 161 (307)
T ss_pred EcccCeeeeecc-cccceeeEEEecCcceEEEeccccceeEEEEcccCCC--CccchhhhhcCceeEEEec--ccEEEee
Confidence 999999999999 9999999999999999999999999999998876644 5567777778889888875 6689999
Q ss_pred ECCCCEEEEEeeecccceecchhhHHHHHhhccchhhhhccCceeEEeeccccccccceeEEeecCCceEEEEEeeeeee
Q 003579 333 GQDRAFRLFSVIQDQQSRELSQRHVAKRARKLKMKEEELKLKPVIAFDCAEIRERDWCNVVTCHMDTAQAYVWRLQNFVL 412 (809)
Q Consensus 333 ~~dg~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~ 412 (809)
+.||++|.||++.+......
T Consensus 162 S~DGtvRtydiR~G~l~sDy------------------------------------------------------------ 181 (307)
T KOG0316|consen 162 SVDGTVRTYDIRKGTLSSDY------------------------------------------------------------ 181 (307)
T ss_pred ccCCcEEEEEeecceeehhh------------------------------------------------------------
Confidence 99999999999877543322
Q ss_pred cceeeecCCCCCCCeEEEEEcCCCCEEEEEeCCCcEEEEECCCCceeeeeeCcccccccCccccEE--EEEEcCCCCEEE
Q 003579 413 GEHILRPCPENPTAVKACTISACGNFAVLGTAGGWIERFNLQSGISRGSYLDMSERSNYAHNGEVV--GVACDSTNTLMI 490 (809)
Q Consensus 413 ~~~~~~~~~~~~~~v~~v~~s~~g~~l~~g~~~g~i~i~~~~~~~~~~~~~~~~~~~~~~h~~~v~--~l~~~~~~~~l~ 490 (809)
...+|++++++++|+..++++-++++++.|-.+|+.+..+. +|...-. ..+++.....++
T Consensus 182 ----------~g~pit~vs~s~d~nc~La~~l~stlrLlDk~tGklL~sYk--------Ghkn~eykldc~l~qsdthV~ 243 (307)
T KOG0316|consen 182 ----------FGHPITSVSFSKDGNCSLASSLDSTLRLLDKETGKLLKSYK--------GHKNMEYKLDCCLNQSDTHVF 243 (307)
T ss_pred ----------cCCcceeEEecCCCCEEEEeeccceeeecccchhHHHHHhc--------ccccceeeeeeeecccceeEE
Confidence 22789999999999999999999999999999999999986 8876543 445566678999
Q ss_pred EEeCcCeEEEEECCCCceeeeeecCCC--eEEEEEeeCCCEEEEEeCCCeEEEE
Q 003579 491 SAGYHGDIKVWDFKGRDLKSRWEVGCS--LVKIVYHRVNGLLATVADDLVIRLF 542 (809)
Q Consensus 491 s~~~dg~i~iwd~~~~~~~~~~~~~~~--i~~~~~s~~~~~la~~~~d~~I~v~ 542 (809)
+|+.||.|.+||+.....+..+...+. +..+.++|.-..++++... .+..|
T Consensus 244 sgSEDG~Vy~wdLvd~~~~sk~~~~~~v~v~dl~~hp~~~~f~~A~~~-~~~~~ 296 (307)
T KOG0316|consen 244 SGSEDGKVYFWDLVDETQISKLSVVSTVIVTDLSCHPTMDDFITATGH-GDLFW 296 (307)
T ss_pred eccCCceEEEEEeccceeeeeeccCCceeEEeeecccCccceeEecCC-ceece
Confidence 999999999999999999999887743 6889999987767666543 34444
No 65
>PLN00181 protein SPA1-RELATED; Provisional
Probab=99.98 E-value=1.1e-29 Score=297.17 Aligned_cols=303 Identities=12% Similarity=0.173 Sum_probs=243.6
Q ss_pred CCcEEEEECCCceeeeeeec----ccccceEEEEEecCCCEEEEEcCCCcEEEEEeeCCCCC----ceeEEeccCCCCCC
Q 003579 246 SGVISIWNLEKRRLQSVIRE----AHDNAIISLHFFANEPVLMSASADNSIKMWIFDTTDGD----PRLLRFRSGHSAPP 317 (809)
Q Consensus 246 dg~I~iwdl~~~~~~~~~~~----~h~~~V~~l~~~~~~~~l~s~s~d~~i~vw~~~~~~~~----~~~~~~~~~h~~~v 317 (809)
+|.+++|+..+.+....+.. .|.+.|.+++|+|++.+|++|+.|+.|++|++...... ....... .+...+
T Consensus 457 ~gl~~~~~~~~~~~~~~~~~~~~~~~~~~V~~i~fs~dg~~latgg~D~~I~iwd~~~~~~~~~~~~~~~~~~-~~~~~v 535 (793)
T PLN00181 457 EGLCKYLSFSKLRVKADLKQGDLLNSSNLVCAIGFDRDGEFFATAGVNKKIKIFECESIIKDGRDIHYPVVEL-ASRSKL 535 (793)
T ss_pred hhhhhhhcccceEEEEeeccccccCCCCcEEEEEECCCCCEEEEEeCCCEEEEEECCcccccccccccceEEe-cccCce
Confidence 67788888877655444332 48999999999999999999999999999987542111 1112222 234678
Q ss_pred eeEEEec-CCCEEEEEECCCCEEEEEeeecccceecchhhHHHHHhhccchhhhhccCceeEEeeccccccccceeEEee
Q 003579 318 LCIRFYA-NGRHILSAGQDRAFRLFSVIQDQQSRELSQRHVAKRARKLKMKEEELKLKPVIAFDCAEIRERDWCNVVTCH 396 (809)
Q Consensus 318 ~~i~~~~-~~~~l~s~~~dg~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~ 396 (809)
.+++|++ ++.+|++++.||+|++||+.+.+....
T Consensus 536 ~~l~~~~~~~~~las~~~Dg~v~lWd~~~~~~~~~--------------------------------------------- 570 (793)
T PLN00181 536 SGICWNSYIKSQVASSNFEGVVQVWDVARSQLVTE--------------------------------------------- 570 (793)
T ss_pred eeEEeccCCCCEEEEEeCCCeEEEEECCCCeEEEE---------------------------------------------
Confidence 9999987 578999999999999999865432222
Q ss_pred cCCceEEEEEeeeeeecceeeecCCCCCCCeEEEEEcC-CCCEEEEEeCCCcEEEEECCCCceeeeeeCcccccccCccc
Q 003579 397 MDTAQAYVWRLQNFVLGEHILRPCPENPTAVKACTISA-CGNFAVLGTAGGWIERFNLQSGISRGSYLDMSERSNYAHNG 475 (809)
Q Consensus 397 ~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~v~~v~~s~-~g~~l~~g~~~g~i~i~~~~~~~~~~~~~~~~~~~~~~h~~ 475 (809)
..+|...|.+++|+| +++++++|+.||.|++||+.++.....+. +..
T Consensus 571 -----------------------~~~H~~~V~~l~~~p~~~~~L~Sgs~Dg~v~iWd~~~~~~~~~~~---------~~~ 618 (793)
T PLN00181 571 -----------------------MKEHEKRVWSIDYSSADPTLLASGSDDGSVKLWSINQGVSIGTIK---------TKA 618 (793)
T ss_pred -----------------------ecCCCCCEEEEEEcCCCCCEEEEEcCCCEEEEEECCCCcEEEEEe---------cCC
Confidence 124668899999996 78999999999999999999988777663 335
Q ss_pred cEEEEEEc-CCCCEEEEEeCcCeEEEEECCCCc-eeeeee-cCCCeEEEEEeeCCCEEEEEeCCCeEEEEEcCC------
Q 003579 476 EVVGVACD-STNTLMISAGYHGDIKVWDFKGRD-LKSRWE-VGCSLVKIVYHRVNGLLATVADDLVIRLFDVVA------ 546 (809)
Q Consensus 476 ~v~~l~~~-~~~~~l~s~~~dg~i~iwd~~~~~-~~~~~~-~~~~i~~~~~s~~~~~la~~~~d~~I~v~d~~~------ 546 (809)
.+.++.|+ +++.++++|+.||.|++||+.+.+ ....+. +...|.++.|. ++.++++++.|+.|++||+..
T Consensus 619 ~v~~v~~~~~~g~~latgs~dg~I~iwD~~~~~~~~~~~~~h~~~V~~v~f~-~~~~lvs~s~D~~ikiWd~~~~~~~~~ 697 (793)
T PLN00181 619 NICCVQFPSESGRSLAFGSADHKVYYYDLRNPKLPLCTMIGHSKTVSYVRFV-DSSTLVSSSTDNTLKLWDLSMSISGIN 697 (793)
T ss_pred CeEEEEEeCCCCCEEEEEeCCCeEEEEECCCCCccceEecCCCCCEEEEEEe-CCCEEEEEECCCEEEEEeCCCCccccC
Confidence 78999995 578999999999999999998765 344444 44789999997 688999999999999999974
Q ss_pred CeEEEEEecCCCCeeeEEECCCCCEEEEEeCCCeEEEEEcCCccEEEEee--------------eCcceEEEEEcCCCCe
Q 003579 547 LRMVRKFEGHTDRITDFCFSEDGKWLLSSGMDGSLRIWDVILARQIDAIH--------------VDVSITALSLSPNMDV 612 (809)
Q Consensus 547 ~~~~~~~~~h~~~I~~l~fspdg~~l~s~s~D~~I~vwd~~~~~~i~~~~--------------~~~~v~~l~~spdg~~ 612 (809)
.+.+..+.+|...++.++|+|++++|++|+.|+.|++|+......+..+. +...|.+++|+|++..
T Consensus 698 ~~~l~~~~gh~~~i~~v~~s~~~~~lasgs~D~~v~iw~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~V~~v~ws~~~~~ 777 (793)
T PLN00181 698 ETPLHSFMGHTNVKNFVGLSVSDGYIATGSETNEVFVYHKAFPMPVLSYKFKTIDPVSGLEVDDASQFISSVCWRGQSST 777 (793)
T ss_pred CcceEEEcCCCCCeeEEEEcCCCCEEEEEeCCCEEEEEECCCCCceEEEecccCCcccccccCCCCcEEEEEEEcCCCCe
Confidence 36788999999999999999999999999999999999987665443321 1224999999999999
Q ss_pred EEEEEeCCCeEEEeec
Q 003579 613 LATAHVDQNGVYLWVN 628 (809)
Q Consensus 613 lat~~~d~~~i~lW~~ 628 (809)
|++++.+| .|++|++
T Consensus 778 lva~~~dG-~I~i~~~ 792 (793)
T PLN00181 778 LVAANSTG-NIKILEM 792 (793)
T ss_pred EEEecCCC-cEEEEec
Confidence 99999999 5999985
No 66
>PF04192 Utp21: Utp21 specific WD40 associated putative domain ; InterPro: IPR007319 A large ribonuclear protein complex is required for the processing of the small-ribosomal-subunit rRNA - the small-subunit (SSU) processome [, ]. This preribosomal complex contains the U3 snoRNA and at least 40 proteins, which have the following properties: They are nucleolar. They are able to coimmunoprecipitate with the U3 snoRNA and Mpp10 (a protein specific to the SSU processome). They are required for 18S rRNA biogenesis. There appears to be a linkage between polymerase I transcription and the formation of the SSU processome; as some, but not all, of the SSU processome components are required for pre-rRNA transcription initiation. These SSU processome components have been termed t-Utps. They form a pre-complex with pre-18S rRNA in the absence of snoRNA U3 and other SSU processome components. It has been proposed that the t-Utp complex proteins are both rDNA and rRNA binding proteins that are involved in the initiation of pre18S rRNA transcription. Initially binding to rDNA then associating with the 5' end of the nascent pre18S rRNA. The t-Utpcomplex forms the nucleus around which the rest of the SSU processome components, including snoRNA U3, assemble []. From electron microscopy the SSU processome may correspond to the terminal knobs visualized at the 5' ends of nascent 18S rRNA. Utp21 is a component of the SSU processome, which is required for pre-18S rRNA processing. It interacts with Utp18 [].; GO: 0006364 rRNA processing, 0032040 small-subunit processome
Probab=99.98 E-value=2e-33 Score=268.12 Aligned_cols=119 Identities=39% Similarity=0.587 Sum_probs=104.4
Q ss_pred CCCCCccccccCceeccCCchhhHhhccchHhhhhhCCCCCCCCCCCCCCcccccCCCCCcccc--cCCCCCcc--cc--
Q 003579 682 FGLPTFKQQIPDLVTLSLLPKSQWQSLINLDIIKARNKPIEPPKKPEKAPFFLPSVPSLSGEIL--FKPSESTK--ED-- 755 (809)
Q Consensus 682 ~~~~~~~~~~~~l~tls~~p~~~~~~l~~l~~i~~r~kp~~~~~~~~~~pffl~~~~~~~~~~~--~~~~~~~~--~~-- 755 (809)
..|.+++||+++|||||++|++|||+|+|||+||+||||+||||+|++|||||||++++++.|. ......++ .+
T Consensus 17 ~~~~s~~Qi~~~LiTLS~lP~srWq~Ll~LD~IK~RNKPkeppKkPe~APFFLpt~~~~~~~~~~~~~~~~~~~~~~~~~ 96 (237)
T PF04192_consen 17 IEYSSPEQIDEDLITLSGLPRSRWQNLLNLDVIKERNKPKEPPKKPEKAPFFLPTLPGLEPRFQDAFESEEEEEEEEERS 96 (237)
T ss_pred cccCChhhhCccceeeccCCHHHHHHHHHHHHHHHhCCCCCCCCCcCCCCcccCcCCCCCccccccccccccccchhhhh
Confidence 5599999999999999999999999999999999999999999999999999999999999882 21111111 11
Q ss_pred --------ccccccchhHHHHhcCCccCcccchhhHHHHHhhhhhhhcccceEEEee
Q 003579 756 --------TESLKFQHLLIILKVCPHLLWIWNFECFRSLIMMITKNLIKDLSIYRLN 804 (809)
Q Consensus 756 --------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 804 (809)
.....+|.|+++|+++.+.++| .+.|..|+.|+|.++ |+|||+|+
T Consensus 97 ~~~~~~~~~~~~~~s~f~~lL~~~~~~~dy--~~~~~~LkslsPS~i--DlEIRsL~ 149 (237)
T PF04192_consen 97 RLRKLKKDNSLDFESEFTRLLRSASESEDY--SEFLEYLKSLSPSAI--DLEIRSLS 149 (237)
T ss_pred hhhhcccccCccccCHHHHHHHhhcccccH--HHHHHHHHhCChhHH--HHHHHhcc
Confidence 2235889999999999999999 999999999999999 99999998
No 67
>KOG0275 consensus Conserved WD40 repeat-containing protein [General function prediction only]
Probab=99.98 E-value=1.8e-31 Score=248.87 Aligned_cols=284 Identities=21% Similarity=0.324 Sum_probs=239.9
Q ss_pred CCCCEEEEEEcCCCCEEEEEeCCCeEEEEEeeCCeEEEEEec-------cCCCcEEEEEEecCCCCEEEEEcCCCcEEEE
Q 003579 180 WGSSISSCVSSPALDVVAVGCSDGKIHVHNVRYDEELVTFTH-------SMRGAVTALAFSSDGQPLLASGASSGVISIW 252 (809)
Q Consensus 180 ~~~~I~~l~~sp~~~~la~g~~dg~i~iwd~~~~~~~~~~~~-------~~~~~V~~l~fs~dg~~~lasg~~dg~I~iw 252 (809)
..+.+.|..|||||++|++|+.||.|.+||..+|+....++- -+..+|.|++|+.|.. .||+|+.||.|++|
T Consensus 212 ~KSh~EcA~FSPDgqyLvsgSvDGFiEVWny~~GKlrKDLkYQAqd~fMMmd~aVlci~FSRDsE-MlAsGsqDGkIKvW 290 (508)
T KOG0275|consen 212 QKSHVECARFSPDGQYLVSGSVDGFIEVWNYTTGKLRKDLKYQAQDNFMMMDDAVLCISFSRDSE-MLASGSQDGKIKVW 290 (508)
T ss_pred cccchhheeeCCCCceEeeccccceeeeehhccchhhhhhhhhhhcceeecccceEEEeecccHH-HhhccCcCCcEEEE
Confidence 356788999999999999999999999999999886554431 1257899999999999 99999999999999
Q ss_pred ECCCceeeeeeecccccceEEEEEecCCCEEEEEcCCCcEEEEEeeCCCCCceeEEeccCCCCCCeeEEEecCCCEEEEE
Q 003579 253 NLEKRRLQSVIREAHDNAIISLHFFANEPVLMSASADNSIKMWIFDTTDGDPRLLRFRSGHSAPPLCIRFYANGRHILSA 332 (809)
Q Consensus 253 dl~~~~~~~~~~~~h~~~V~~l~~~~~~~~l~s~s~d~~i~vw~~~~~~~~~~~~~~~~~h~~~v~~i~~~~~~~~l~s~ 332 (809)
.+++|.+++.+..+|+.+|+++.|+.|+..+++++.|.++++.-+..+ ++++.+.||+..|+...|.+||.+++++
T Consensus 291 ri~tG~ClRrFdrAHtkGvt~l~FSrD~SqiLS~sfD~tvRiHGlKSG----K~LKEfrGHsSyvn~a~ft~dG~~iisa 366 (508)
T KOG0275|consen 291 RIETGQCLRRFDRAHTKGVTCLSFSRDNSQILSASFDQTVRIHGLKSG----KCLKEFRGHSSYVNEATFTDDGHHIISA 366 (508)
T ss_pred EEecchHHHHhhhhhccCeeEEEEccCcchhhcccccceEEEeccccc----hhHHHhcCccccccceEEcCCCCeEEEe
Confidence 999999999999899999999999999999999999999999976655 6888899999999999999999999999
Q ss_pred ECCCCEEEEEeeecccceecchhhHHHHHhhccchhhhhccCceeEEeeccccccccceeEEeecCCceEEEEEeeeeee
Q 003579 333 GQDRAFRLFSVIQDQQSRELSQRHVAKRARKLKMKEEELKLKPVIAFDCAEIRERDWCNVVTCHMDTAQAYVWRLQNFVL 412 (809)
Q Consensus 333 ~~dg~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~ 412 (809)
+.||++++|+..+..+...+..
T Consensus 367 SsDgtvkvW~~KtteC~~Tfk~---------------------------------------------------------- 388 (508)
T KOG0275|consen 367 SSDGTVKVWHGKTTECLSTFKP---------------------------------------------------------- 388 (508)
T ss_pred cCCccEEEecCcchhhhhhccC----------------------------------------------------------
Confidence 9999999999877665444321
Q ss_pred cceeeecCCCCCCCeEEEEEcCCCCEEEEEeCCCcEEEEECCCCceeeeeeCcccccccCccccEEEEEEcCCC-CEEEE
Q 003579 413 GEHILRPCPENPTAVKACTISACGNFAVLGTAGGWIERFNLQSGISRGSYLDMSERSNYAHNGEVVGVACDSTN-TLMIS 491 (809)
Q Consensus 413 ~~~~~~~~~~~~~~v~~v~~s~~g~~l~~g~~~g~i~i~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~-~~l~s 491 (809)
.+...+|..+..-|.+ ..++.
T Consensus 389 ----------------------------------------------------------~~~d~~vnsv~~~PKnpeh~iV 410 (508)
T KOG0275|consen 389 ----------------------------------------------------------LGTDYPVNSVILLPKNPEHFIV 410 (508)
T ss_pred ----------------------------------------------------------CCCcccceeEEEcCCCCceEEE
Confidence 0223344455444433 45666
Q ss_pred EeCcCeEEEEECCCCceeeeeec----CCCeEEEEEeeCCCEEEEEeCCCeEEEEEcCCCeEEEEEecCCCCeeeEEECC
Q 003579 492 AGYHGDIKVWDFKGRDLKSRWEV----GCSLVKIVYHRVNGLLATVADDLVIRLFDVVALRMVRKFEGHTDRITDFCFSE 567 (809)
Q Consensus 492 ~~~dg~i~iwd~~~~~~~~~~~~----~~~i~~~~~s~~~~~la~~~~d~~I~v~d~~~~~~~~~~~~h~~~I~~l~fsp 567 (809)
|....+|.+.++. |+.++.+.. ++...+.+.+|.|.++.+.++|+.++-|...+|++.+++.-|...|-.++-+|
T Consensus 411 CNrsntv~imn~q-GQvVrsfsSGkREgGdFi~~~lSpkGewiYcigED~vlYCF~~~sG~LE~tl~VhEkdvIGl~HHP 489 (508)
T KOG0275|consen 411 CNRSNTVYIMNMQ-GQVVRSFSSGKREGGDFINAILSPKGEWIYCIGEDGVLYCFSVLSGKLERTLPVHEKDVIGLTHHP 489 (508)
T ss_pred EcCCCeEEEEecc-ceEEeeeccCCccCCceEEEEecCCCcEEEEEccCcEEEEEEeecCceeeeeecccccccccccCc
Confidence 6666777777654 444555433 25677889999999999999999999999999999999999999999999999
Q ss_pred CCCEEEEEeCCCeEEEEE
Q 003579 568 DGKWLLSSGMDGSLRIWD 585 (809)
Q Consensus 568 dg~~l~s~s~D~~I~vwd 585 (809)
..+.|++-++||.+++|.
T Consensus 490 HqNllAsYsEDgllKLWk 507 (508)
T KOG0275|consen 490 HQNLLASYSEDGLLKLWK 507 (508)
T ss_pred ccchhhhhcccchhhhcC
Confidence 999999999999999995
No 68
>KOG0275 consensus Conserved WD40 repeat-containing protein [General function prediction only]
Probab=99.98 E-value=1.1e-31 Score=250.33 Aligned_cols=291 Identities=22% Similarity=0.339 Sum_probs=248.6
Q ss_pred eeeEEcCCcc-ccEEEEeCCCCCCEEEEEeCCCeEEEEeCCCCceEEEEc--------CCCCCEEEEEEcCCCCEEEEEe
Q 003579 130 VGHVKLDDKF-TPTCIMHPDTYLNKVIVGSQEGSLQLWNISTKKKLYEFK--------GWGSSISSCVSSPALDVVAVGC 200 (809)
Q Consensus 130 ~~~~~~~~~~-~~~~~~~p~~~~~~l~~~~~dg~i~lwd~~~~~~~~~~~--------~~~~~I~~l~~sp~~~~la~g~ 200 (809)
.+++++.... .-+..|+|++ +++++|+.||.|.+||..+|+....++ -+..+|.|+.||.|...||+|+
T Consensus 205 ~r~IKFg~KSh~EcA~FSPDg--qyLvsgSvDGFiEVWny~~GKlrKDLkYQAqd~fMMmd~aVlci~FSRDsEMlAsGs 282 (508)
T KOG0275|consen 205 ARSIKFGQKSHVECARFSPDG--QYLVSGSVDGFIEVWNYTTGKLRKDLKYQAQDNFMMMDDAVLCISFSRDSEMLASGS 282 (508)
T ss_pred hhheecccccchhheeeCCCC--ceEeeccccceeeeehhccchhhhhhhhhhhcceeecccceEEEeecccHHHhhccC
Confidence 4556665443 3445599999 999999999999999999998765443 4688999999999999999999
Q ss_pred CCCeEEEEEeeCCeEEEEEeccCCCcEEEEEEecCCCCEEEEEcCCCcEEEEECCCceeeeeeecccccceEEEEEecCC
Q 003579 201 SDGKIHVHNVRYDEELVTFTHSMRGAVTALAFSSDGQPLLASGASSGVISIWNLEKRRLQSVIREAHDNAIISLHFFANE 280 (809)
Q Consensus 201 ~dg~i~iwd~~~~~~~~~~~~~~~~~V~~l~fs~dg~~~lasg~~dg~I~iwdl~~~~~~~~~~~~h~~~V~~l~~~~~~ 280 (809)
.||.|++|.+.+|.+++.|...|...|+|+.|+.|+. .+.+++.|.++++.-+.+|+++..++ +|.+.|+...|.++|
T Consensus 283 qDGkIKvWri~tG~ClRrFdrAHtkGvt~l~FSrD~S-qiLS~sfD~tvRiHGlKSGK~LKEfr-GHsSyvn~a~ft~dG 360 (508)
T KOG0275|consen 283 QDGKIKVWRIETGQCLRRFDRAHTKGVTCLSFSRDNS-QILSASFDQTVRIHGLKSGKCLKEFR-GHSSYVNEATFTDDG 360 (508)
T ss_pred cCCcEEEEEEecchHHHHhhhhhccCeeEEEEccCcc-hhhcccccceEEEeccccchhHHHhc-CccccccceEEcCCC
Confidence 9999999999999999999987789999999999998 78899999999999999999999999 999999999999999
Q ss_pred CEEEEEcCCCcEEEEEeeCCCCCceeEEec--cCCCCCCeeEEEec-CCCEEEEEECCCCEEEEEeeecccceecchhhH
Q 003579 281 PVLMSASADNSIKMWIFDTTDGDPRLLRFR--SGHSAPPLCIRFYA-NGRHILSAGQDRAFRLFSVIQDQQSRELSQRHV 357 (809)
Q Consensus 281 ~~l~s~s~d~~i~vw~~~~~~~~~~~~~~~--~~h~~~v~~i~~~~-~~~~l~s~~~dg~i~~wd~~~~~~~~~~~~~~~ 357 (809)
..+++++.||+|++|+..+.+ ++.++ .+...+|..+-..| +...+++|...+++.+.++. ++..+.++.+.
T Consensus 361 ~~iisaSsDgtvkvW~~Ktte----C~~Tfk~~~~d~~vnsv~~~PKnpeh~iVCNrsntv~imn~q-GQvVrsfsSGk- 434 (508)
T KOG0275|consen 361 HHIISASSDGTVKVWHGKTTE----CLSTFKPLGTDYPVNSVILLPKNPEHFIVCNRSNTVYIMNMQ-GQVVRSFSSGK- 434 (508)
T ss_pred CeEEEecCCccEEEecCcchh----hhhhccCCCCcccceeEEEcCCCCceEEEEcCCCeEEEEecc-ceEEeeeccCC-
Confidence 999999999999999876653 33222 34567888888888 66789999999999988863 22223222211
Q ss_pred HHHHhhccchhhhhccCceeEEeeccccccccceeEEeecCCceEEEEEeeeeeecceeeecCCCCCCCeEEEEEcCCCC
Q 003579 358 AKRARKLKMKEEELKLKPVIAFDCAEIRERDWCNVVTCHMDTAQAYVWRLQNFVLGEHILRPCPENPTAVKACTISACGN 437 (809)
Q Consensus 358 ~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~v~~v~~s~~g~ 437 (809)
...+...++++||.|.
T Consensus 435 ----------------------------------------------------------------REgGdFi~~~lSpkGe 450 (508)
T KOG0275|consen 435 ----------------------------------------------------------------REGGDFINAILSPKGE 450 (508)
T ss_pred ----------------------------------------------------------------ccCCceEEEEecCCCc
Confidence 1226677889999999
Q ss_pred EEEEEeCCCcEEEEECCCCceeeeeeCcccccccCccccEEEEEEcCCCCEEEEEeCcCeEEEEE
Q 003579 438 FAVLGTAGGWIERFNLQSGISRGSYLDMSERSNYAHNGEVVGVACDSTNTLMISAGYHGDIKVWD 502 (809)
Q Consensus 438 ~l~~g~~~g~i~i~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~l~s~~~dg~i~iwd 502 (809)
++.+.+.|+.++.|+..+|.....+. -|...|.+++-+|..+.+++-+.||.+++|.
T Consensus 451 wiYcigED~vlYCF~~~sG~LE~tl~--------VhEkdvIGl~HHPHqNllAsYsEDgllKLWk 507 (508)
T KOG0275|consen 451 WIYCIGEDGVLYCFSVLSGKLERTLP--------VHEKDVIGLTHHPHQNLLASYSEDGLLKLWK 507 (508)
T ss_pred EEEEEccCcEEEEEEeecCceeeeee--------cccccccccccCcccchhhhhcccchhhhcC
Confidence 99999999999999999999988886 8999999999999999999999999999994
No 69
>KOG0643 consensus Translation initiation factor 3, subunit i (eIF-3i)/TGF-beta receptor-interacting protein (TRIP-1) [Translation, ribosomal structure and biogenesis; Signal transduction mechanisms]
Probab=99.97 E-value=3e-30 Score=235.13 Aligned_cols=292 Identities=13% Similarity=0.184 Sum_probs=236.0
Q ss_pred EEcCCCCCEEEEEEcCCCCEEEEEeCCCeEEEEEeeCCeEEEEEeccCCCcEEEEEEecCCCCEEEEEcCCCcEEEEECC
Q 003579 176 EFKGWGSSISSCVSSPALDVVAVGCSDGKIHVHNVRYDEELVTFTHSMRGAVTALAFSSDGQPLLASGASSGVISIWNLE 255 (809)
Q Consensus 176 ~~~~~~~~I~~l~~sp~~~~la~g~~dg~i~iwd~~~~~~~~~~~~~~~~~V~~l~fs~dg~~~lasg~~dg~I~iwdl~ 255 (809)
.+++|..+++.+.++.+|++|.+++.|.+..+|-..+|+.+.++.+| .+.|.|+....+.+ .|++|+.|.++++||.+
T Consensus 5 ~l~GHERplTqiKyN~eGDLlFscaKD~~~~vw~s~nGerlGty~GH-tGavW~~Did~~s~-~liTGSAD~t~kLWDv~ 82 (327)
T KOG0643|consen 5 LLQGHERPLTQIKYNREGDLLFSCAKDSTPTVWYSLNGERLGTYDGH-TGAVWCCDIDWDSK-HLITGSADQTAKLWDVE 82 (327)
T ss_pred ccccCccccceEEecCCCcEEEEecCCCCceEEEecCCceeeeecCC-CceEEEEEecCCcc-eeeeccccceeEEEEcC
Confidence 36789999999999999999999999999999999999999999987 89999999999988 89999999999999999
Q ss_pred CceeeeeeecccccceEEEEEecCCCEEEEEcC-----CCcEEEEEeeCCCC---CceeEEeccCCCCCCeeEEEecCCC
Q 003579 256 KRRLQSVIREAHDNAIISLHFFANEPVLMSASA-----DNSIKMWIFDTTDG---DPRLLRFRSGHSAPPLCIRFYANGR 327 (809)
Q Consensus 256 ~~~~~~~~~~~h~~~V~~l~~~~~~~~l~s~s~-----d~~i~vw~~~~~~~---~~~~~~~~~~h~~~v~~i~~~~~~~ 327 (809)
+|+.+..+. -..+|..+.|++++++++.+.. .+.|.++++..... ...+...+..+...++.+-|.|-++
T Consensus 83 tGk~la~~k--~~~~Vk~~~F~~~gn~~l~~tD~~mg~~~~v~~fdi~~~~~~~~s~ep~~kI~t~~skit~a~Wg~l~~ 160 (327)
T KOG0643|consen 83 TGKQLATWK--TNSPVKRVDFSFGGNLILASTDKQMGYTCFVSVFDIRDDSSDIDSEEPYLKIPTPDSKITSALWGPLGE 160 (327)
T ss_pred CCcEEEEee--cCCeeEEEeeccCCcEEEEEehhhcCcceEEEEEEccCChhhhcccCceEEecCCccceeeeeecccCC
Confidence 999999987 6788999999999997776653 46688887764321 1122333344556666666666666
Q ss_pred EEEEEECCCCEEEEEeeecccceecchhhHHHHHhhccchhhhhccCceeEEeeccccccccceeEEeecCCceEEEEEe
Q 003579 328 HILSAGQDRAFRLFSVIQDQQSRELSQRHVAKRARKLKMKEEELKLKPVIAFDCAEIRERDWCNVVTCHMDTAQAYVWRL 407 (809)
Q Consensus 328 ~l~s~~~dg~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~ 407 (809)
+|++|..||.|..||++++.
T Consensus 161 ~ii~Ghe~G~is~~da~~g~------------------------------------------------------------ 180 (327)
T KOG0643|consen 161 TIIAGHEDGSISIYDARTGK------------------------------------------------------------ 180 (327)
T ss_pred EEEEecCCCcEEEEEcccCc------------------------------------------------------------
Confidence 66666666666666655432
Q ss_pred eeeeecceeeecCCCCCCCeEEEEEcCCCCEEEEEeCCCcEEEEECCCCceeeeeeCcccccccCccccEEEEEEcCCCC
Q 003579 408 QNFVLGEHILRPCPENPTAVKACTISACGNFAVLGTAGGWIERFNLQSGISRGSYLDMSERSNYAHNGEVVGVACDSTNT 487 (809)
Q Consensus 408 ~~~~~~~~~~~~~~~~~~~v~~v~~s~~g~~l~~g~~~g~i~i~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~ 487 (809)
....-. ..|...|+.+.++++..
T Consensus 181 --------------------------------------------------~~v~s~-------~~h~~~Ind~q~s~d~T 203 (327)
T KOG0643|consen 181 --------------------------------------------------ELVDSD-------EEHSSKINDLQFSRDRT 203 (327)
T ss_pred --------------------------------------------------eeeech-------hhhccccccccccCCcc
Confidence 221111 37888999999999999
Q ss_pred EEEEEeCcCeEEEEECCCCceeeeeecCCCeEEEEEeeCCCEEEEEeCCCe--------------EEEEEcCCCeEEEEE
Q 003579 488 LMISAGYHGDIKVWDFKGRDLKSRWEVGCSLVKIVYHRVNGLLATVADDLV--------------IRLFDVVALRMVRKF 553 (809)
Q Consensus 488 ~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~i~~~~~s~~~~~la~~~~d~~--------------I~v~d~~~~~~~~~~ 553 (809)
++++++.|.+-++||+.+-+.++++....|+++.+++|....++.|+.... -++|++-..+.+..+
T Consensus 204 ~FiT~s~Dttakl~D~~tl~v~Kty~te~PvN~aaisP~~d~VilgGGqeA~dVTTT~~r~GKFEArFyh~i~eEEigrv 283 (327)
T KOG0643|consen 204 YFITGSKDTTAKLVDVRTLEVLKTYTTERPVNTAAISPLLDHVILGGGQEAMDVTTTSTRAGKFEARFYHLIFEEEIGRV 283 (327)
T ss_pred eEEecccCccceeeeccceeeEEEeeecccccceecccccceEEecCCceeeeeeeecccccchhhhHHHHHHHHHhccc
Confidence 999999999999999999999999999999999999998877777654221 222333333456778
Q ss_pred ecCCCCeeeEEECCCCCEEEEEeCCCeEEEEEcCC
Q 003579 554 EGHTDRITDFCFSEDGKWLLSSGMDGSLRIWDVIL 588 (809)
Q Consensus 554 ~~h~~~I~~l~fspdg~~l~s~s~D~~I~vwd~~~ 588 (809)
+||-++|++++|+|||+-.++|++||.||+.....
T Consensus 284 kGHFGPINsvAfhPdGksYsSGGEDG~VR~h~Fd~ 318 (327)
T KOG0643|consen 284 KGHFGPINSVAFHPDGKSYSSGGEDGYVRLHHFDS 318 (327)
T ss_pred cccccCcceeEECCCCcccccCCCCceEEEEEecc
Confidence 89999999999999999999999999999986653
No 70
>KOG1407 consensus WD40 repeat protein [Function unknown]
Probab=99.97 E-value=1.4e-29 Score=230.08 Aligned_cols=276 Identities=17% Similarity=0.208 Sum_probs=245.7
Q ss_pred ccccceEEEEEecCCCEEEEEcCCCcEEEEEeeCCCCCceeEEeccCCCCCCeeEEEec-CCCEEEEEECCCCEEEEEee
Q 003579 266 AHDNAIISLHFFANEPVLMSASADNSIKMWIFDTTDGDPRLLRFRSGHSAPPLCIRFYA-NGRHILSAGQDRAFRLFSVI 344 (809)
Q Consensus 266 ~h~~~V~~l~~~~~~~~l~s~s~d~~i~vw~~~~~~~~~~~~~~~~~h~~~v~~i~~~~-~~~~l~s~~~dg~i~~wd~~ 344 (809)
+|...|.+++|+.+|..|++++.|+++++|+++... ...-....+|.+.|-.++|+| ....+++++.|.++++||++
T Consensus 18 ~~~~~v~Sv~wn~~g~~lasgs~dktv~v~n~e~~r--~~~~~~~~gh~~svdql~w~~~~~d~~atas~dk~ir~wd~r 95 (313)
T KOG1407|consen 18 GHVQKVHSVAWNCDGTKLASGSFDKTVSVWNLERDR--FRKELVYRGHTDSVDQLCWDPKHPDLFATASGDKTIRIWDIR 95 (313)
T ss_pred hhhhcceEEEEcccCceeeecccCCceEEEEecchh--hhhhhcccCCCcchhhheeCCCCCcceEEecCCceEEEEEec
Confidence 789999999999999999999999999999988762 222334568999999999998 66789999999999999999
Q ss_pred ecccceecchhhHHHHHhhccchhhhhccCceeEEeeccccccccceeEEeecCCceEEEEEeeeeeecceeeecCCCCC
Q 003579 345 QDQQSRELSQRHVAKRARKLKMKEEELKLKPVIAFDCAEIRERDWCNVVTCHMDTAQAYVWRLQNFVLGEHILRPCPENP 424 (809)
Q Consensus 345 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~ 424 (809)
..++...... .
T Consensus 96 ~~k~~~~i~~---------------------------------------------------------------------~ 106 (313)
T KOG1407|consen 96 SGKCTARIET---------------------------------------------------------------------K 106 (313)
T ss_pred cCcEEEEeec---------------------------------------------------------------------c
Confidence 8877655432 1
Q ss_pred CCeEEEEEcCCCCEEEEEeCCCcEEEEECCCCceeeeeeCcccccccCccccEEEEEEcCCCCEEEEEeCcCeEEEEECC
Q 003579 425 TAVKACTISACGNFAVLGTAGGWIERFNLQSGISRGSYLDMSERSNYAHNGEVVGVACDSTNTLMISAGYHGDIKVWDFK 504 (809)
Q Consensus 425 ~~v~~v~~s~~g~~l~~g~~~g~i~i~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~l~s~~~dg~i~iwd~~ 504 (809)
..-.-++++|+|+++++|..|..|...|..+-+....+ .....+..++|+.++.+++.....|+|.|..+.
T Consensus 107 ~eni~i~wsp~g~~~~~~~kdD~it~id~r~~~~~~~~---------~~~~e~ne~~w~~~nd~Fflt~GlG~v~ILsyp 177 (313)
T KOG1407|consen 107 GENINITWSPDGEYIAVGNKDDRITFIDARTYKIVNEE---------QFKFEVNEISWNNSNDLFFLTNGLGCVEILSYP 177 (313)
T ss_pred CcceEEEEcCCCCEEEEecCcccEEEEEecccceeehh---------cccceeeeeeecCCCCEEEEecCCceEEEEecc
Confidence 34456789999999999999999999999988777665 455678889999888888877777999999999
Q ss_pred CCceeeeeecC-CCeEEEEEeeCCCEEEEEeCCCeEEEEEcCCCeEEEEEecCCCCeeeEEECCCCCEEEEEeCCCeEEE
Q 003579 505 GRDLKSRWEVG-CSLVKIVYHRVNGLLATVADDLVIRLFDVVALRMVRKFEGHTDRITDFCFSEDGKWLLSSGMDGSLRI 583 (809)
Q Consensus 505 ~~~~~~~~~~~-~~i~~~~~s~~~~~la~~~~d~~I~v~d~~~~~~~~~~~~h~~~I~~l~fspdg~~l~s~s~D~~I~v 583 (809)
.-+++..++.+ ....|+.|+|+|+++|+|+.|..+.+||++..-+++.+..+.-+|..+.||.||++||+||+|..|-|
T Consensus 178 sLkpv~si~AH~snCicI~f~p~GryfA~GsADAlvSLWD~~ELiC~R~isRldwpVRTlSFS~dg~~lASaSEDh~IDI 257 (313)
T KOG1407|consen 178 SLKPVQSIKAHPSNCICIEFDPDGRYFATGSADALVSLWDVDELICERCISRLDWPVRTLSFSHDGRMLASASEDHFIDI 257 (313)
T ss_pred ccccccccccCCcceEEEEECCCCceEeeccccceeeccChhHhhhheeeccccCceEEEEeccCcceeeccCccceEEe
Confidence 99999998766 78889999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EEcCCccEEEEeeeCcceEEEEEcCCCCeEEEEEeCCC
Q 003579 584 WDVILARQIDAIHVDVSITALSLSPNMDVLATAHVDQN 621 (809)
Q Consensus 584 wd~~~~~~i~~~~~~~~v~~l~~spdg~~lat~~~d~~ 621 (809)
=++++|..+..++..++...|+|+|...+||.++.|..
T Consensus 258 A~vetGd~~~eI~~~~~t~tVAWHPk~~LLAyA~ddk~ 295 (313)
T KOG1407|consen 258 AEVETGDRVWEIPCEGPTFTVAWHPKRPLLAYACDDKD 295 (313)
T ss_pred EecccCCeEEEeeccCCceeEEecCCCceeeEEecCCC
Confidence 99999999999999999999999999999999998864
No 71
>KOG0278 consensus Serine/threonine kinase receptor-associated protein [Lipid transport and metabolism]
Probab=99.97 E-value=5.1e-30 Score=231.10 Aligned_cols=281 Identities=16% Similarity=0.256 Sum_probs=246.2
Q ss_pred ccccceEEEEEec---CCCEEEEEcCCCcEEEEEeeCCCCCceeEEeccCCCCCCeeEEEecCCCEEEEEECCCCEEEEE
Q 003579 266 AHDNAIISLHFFA---NEPVLMSASADNSIKMWIFDTTDGDPRLLRFRSGHSAPPLCIRFYANGRHILSAGQDRAFRLFS 342 (809)
Q Consensus 266 ~h~~~V~~l~~~~---~~~~l~s~s~d~~i~vw~~~~~~~~~~~~~~~~~h~~~v~~i~~~~~~~~l~s~~~dg~i~~wd 342 (809)
+|+.+|..++|+| +|-+|++++.|+.-.+-+=+++ .-+-++.||.+.|.+.....+....++++.|=+-++||
T Consensus 12 ghtrpvvdl~~s~itp~g~flisa~kd~~pmlr~g~tg----dwigtfeghkgavw~~~l~~na~~aasaaadftakvw~ 87 (334)
T KOG0278|consen 12 GHTRPVVDLAFSPITPDGYFLISASKDGKPMLRNGDTG----DWIGTFEGHKGAVWSATLNKNATRAASAAADFTAKVWD 87 (334)
T ss_pred CCCcceeEEeccCCCCCceEEEEeccCCCchhccCCCC----CcEEeeeccCcceeeeecCchhhhhhhhcccchhhhhh
Confidence 8999999999986 7779999999998777644443 45778899999999999998888889999999999999
Q ss_pred eeecccceecchhhHHHHHhhccchhhhhccCceeEEeeccccccccceeEEeecCCceEEEEEeeeeeecceeeecCCC
Q 003579 343 VIQDQQSRELSQRHVAKRARKLKMKEEELKLKPVIAFDCAEIRERDWCNVVTCHMDTAQAYVWRLQNFVLGEHILRPCPE 422 (809)
Q Consensus 343 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~ 422 (809)
..++.....+ .
T Consensus 88 a~tgdelhsf---------------------------------------------------------------------~ 98 (334)
T KOG0278|consen 88 AVTGDELHSF---------------------------------------------------------------------E 98 (334)
T ss_pred hhhhhhhhhh---------------------------------------------------------------------h
Confidence 8877655443 2
Q ss_pred CCCCeEEEEEcCCCCEEEEEeCCCcEEEEECCCCceeeeeeCcccccccCccccEEEEEEcCCCCEEEEEeCcCeEEEEE
Q 003579 423 NPTAVKACTISACGNFAVLGTAGGWIERFNLQSGISRGSYLDMSERSNYAHNGEVVGVACDSTNTLMISAGYHGDIKVWD 502 (809)
Q Consensus 423 ~~~~v~~v~~s~~g~~l~~g~~~g~i~i~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~l~s~~~dg~i~iwd 502 (809)
|..-|.+++|+.|.++|++|+.+..+++||++.......- ..+|.+.|..+.|....+.+++++.|++||+||
T Consensus 99 hkhivk~~af~~ds~~lltgg~ekllrvfdln~p~App~E-------~~ghtg~Ir~v~wc~eD~~iLSSadd~tVRLWD 171 (334)
T KOG0278|consen 99 HKHIVKAVAFSQDSNYLLTGGQEKLLRVFDLNRPKAPPKE-------ISGHTGGIRTVLWCHEDKCILSSADDKTVRLWD 171 (334)
T ss_pred hhheeeeEEecccchhhhccchHHHhhhhhccCCCCCchh-------hcCCCCcceeEEEeccCceEEeeccCCceEEEE
Confidence 4467899999999999999999999999999876543322 249999999999999899999999999999999
Q ss_pred CCCCceeeeeecCCCeEEEEEeeCCCEEEEEeCCCeEEEEEcCCCeEEEEEecCCCCeeeEEECCCCCEEEEEeCCCeEE
Q 003579 503 FKGRDLKSRWEVGCSLVKIVYHRVNGLLATVADDLVIRLFDVVALRMVRKFEGHTDRITDFCFSEDGKWLLSSGMDGSLR 582 (809)
Q Consensus 503 ~~~~~~~~~~~~~~~i~~~~~s~~~~~la~~~~d~~I~v~d~~~~~~~~~~~~h~~~I~~l~fspdg~~l~s~s~D~~I~ 582 (809)
..+++.++++....+++++.++++|++|.++ ..+.|.+||..+..+++.+.- .-.|.+...+|+...+++|++|..++
T Consensus 172 ~rTgt~v~sL~~~s~VtSlEvs~dG~ilTia-~gssV~Fwdaksf~~lKs~k~-P~nV~SASL~P~k~~fVaGged~~~~ 249 (334)
T KOG0278|consen 172 HRTGTEVQSLEFNSPVTSLEVSQDGRILTIA-YGSSVKFWDAKSFGLLKSYKM-PCNVESASLHPKKEFFVAGGEDFKVY 249 (334)
T ss_pred eccCcEEEEEecCCCCcceeeccCCCEEEEe-cCceeEEeccccccceeeccC-ccccccccccCCCceEEecCcceEEE
Confidence 9999999999999999999999999987765 467899999999998888773 45689999999999999999999999
Q ss_pred EEEcCCccEEEEe-e-eCcceEEEEEcCCCCeEEEEEeCCCeEEEeecC
Q 003579 583 IWDVILARQIDAI-H-VDVSITALSLSPNMDVLATAHVDQNGVYLWVNR 629 (809)
Q Consensus 583 vwd~~~~~~i~~~-~-~~~~v~~l~~spdg~~lat~~~d~~~i~lW~~~ 629 (809)
.||..+|+.+..+ + ++.+|.|+.|||||..-|+++.|| +|+||-..
T Consensus 250 kfDy~TgeEi~~~nkgh~gpVhcVrFSPdGE~yAsGSEDG-TirlWQt~ 297 (334)
T KOG0278|consen 250 KFDYNTGEEIGSYNKGHFGPVHCVRFSPDGELYASGSEDG-TIRLWQTT 297 (334)
T ss_pred EEeccCCceeeecccCCCCceEEEEECCCCceeeccCCCc-eEEEEEec
Confidence 9999999999886 3 567799999999999999999999 79999753
No 72
>KOG0310 consensus Conserved WD40 repeat-containing protein [Function unknown]
Probab=99.97 E-value=4.5e-29 Score=246.60 Aligned_cols=273 Identities=15% Similarity=0.312 Sum_probs=235.8
Q ss_pred CCcEEEEEEecCCCCEEEEEcCCCcEEEEECCCceeeeeeecccccceEEEEEecCCCEEEEEcCCCcEEEEEeeCCCCC
Q 003579 224 RGAVTALAFSSDGQPLLASGASSGVISIWNLEKRRLQSVIREAHDNAIISLHFFANEPVLMSASADNSIKMWIFDTTDGD 303 (809)
Q Consensus 224 ~~~V~~l~fs~dg~~~lasg~~dg~I~iwdl~~~~~~~~~~~~h~~~V~~l~~~~~~~~l~s~s~d~~i~vw~~~~~~~~ 303 (809)
...|++++|+|...+-+|+.+ .-.+.||+..+.....++. .....|.++.|..||++|+.|+..|.|+++|+.+.
T Consensus 26 ~~~vssl~fsp~~P~d~aVt~-S~rvqly~~~~~~~~k~~s-rFk~~v~s~~fR~DG~LlaaGD~sG~V~vfD~k~r--- 100 (487)
T KOG0310|consen 26 HNSVSSLCFSPKHPYDFAVTS-SVRVQLYSSVTRSVRKTFS-RFKDVVYSVDFRSDGRLLAAGDESGHVKVFDMKSR--- 100 (487)
T ss_pred cCcceeEecCCCCCCceEEec-ccEEEEEecchhhhhhhHH-hhccceeEEEeecCCeEEEccCCcCcEEEeccccH---
Confidence 468999999998776677665 3579999998887777666 56788999999999999999999999999985543
Q ss_pred ceeEEeccCCCCCCeeEEEec-CCCEEEEEECCCCEEEEEeeecccceecchhhHHHHHhhccchhhhhccCceeEEeec
Q 003579 304 PRLLRFRSGHSAPPLCIRFYA-NGRHILSAGQDRAFRLFSVIQDQQSRELSQRHVAKRARKLKMKEEELKLKPVIAFDCA 382 (809)
Q Consensus 304 ~~~~~~~~~h~~~v~~i~~~~-~~~~l~s~~~dg~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~ 382 (809)
..++.+.+|+.|+..+.|+| ++..+++|+.|+.+++||+.+...
T Consensus 101 -~iLR~~~ah~apv~~~~f~~~d~t~l~s~sDd~v~k~~d~s~a~v---------------------------------- 145 (487)
T KOG0310|consen 101 -VILRQLYAHQAPVHVTKFSPQDNTMLVSGSDDKVVKYWDLSTAYV---------------------------------- 145 (487)
T ss_pred -HHHHHHhhccCceeEEEecccCCeEEEecCCCceEEEEEcCCcEE----------------------------------
Confidence 57888899999999999999 666777888888889998743210
Q ss_pred cccccccceeEEeecCCceEEEEEeeeeeecceeeecCCCCCCCeEEEEEcCCCCEEEEEeCCCcEEEEECCCCceeeee
Q 003579 383 EIRERDWCNVVTCHMDTAQAYVWRLQNFVLGEHILRPCPENPTAVKACTISACGNFAVLGTAGGWIERFNLQSGISRGSY 462 (809)
Q Consensus 383 ~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~v~~v~~s~~g~~l~~g~~~g~i~i~~~~~~~~~~~~ 462 (809)
.++
T Consensus 146 -------------------------------------------------------------------~~~---------- 148 (487)
T KOG0310|consen 146 -------------------------------------------------------------------QAE---------- 148 (487)
T ss_pred -------------------------------------------------------------------EEE----------
Confidence 001
Q ss_pred eCcccccccCccccEEEEEEcCCCC-EEEEEeCcCeEEEEECCCC-ceeeeeecCCCeEEEEEeeCCCEEEEEeCCCeEE
Q 003579 463 LDMSERSNYAHNGEVVGVACDSTNT-LMISAGYHGDIKVWDFKGR-DLKSRWEVGCSLVKIVYHRVNGLLATVADDLVIR 540 (809)
Q Consensus 463 ~~~~~~~~~~h~~~v~~l~~~~~~~-~l~s~~~dg~i~iwd~~~~-~~~~~~~~~~~i~~~~~s~~~~~la~~~~d~~I~ 540 (809)
+.+|+..|.+.+++|.+. +++|||.||.|++||++.. ..+.++.++.+|..+.+-|.|.++|+++. ..|+
T Consensus 149 -------l~~htDYVR~g~~~~~~~hivvtGsYDg~vrl~DtR~~~~~v~elnhg~pVe~vl~lpsgs~iasAgG-n~vk 220 (487)
T KOG0310|consen 149 -------LSGHTDYVRCGDISPANDHIVVTGSYDGKVRLWDTRSLTSRVVELNHGCPVESVLALPSGSLIASAGG-NSVK 220 (487)
T ss_pred -------ecCCcceeEeeccccCCCeEEEecCCCceEEEEEeccCCceeEEecCCCceeeEEEcCCCCEEEEcCC-CeEE
Confidence 138999999999999765 8899999999999999987 88889999999999999999999998864 5899
Q ss_pred EEEcCCC-eEEEEEecCCCCeeeEEECCCCCEEEEEeCCCeEEEEEcCCccEEEEeeeCcceEEEEEcCCCCeEEEEEeC
Q 003579 541 LFDVVAL-RMVRKFEGHTDRITDFCFSEDGKWLLSSGMDGSLRIWDVILARQIDAIHVDVSITALSLSPNMDVLATAHVD 619 (809)
Q Consensus 541 v~d~~~~-~~~~~~~~h~~~I~~l~fspdg~~l~s~s~D~~I~vwd~~~~~~i~~~~~~~~v~~l~~spdg~~lat~~~d 619 (809)
|||+.+| +.+..+..|...|+|+++..+++.|++||.|+.|++||+.+-+.+..+..+++|.+++.+|+++.++.|..+
T Consensus 221 VWDl~~G~qll~~~~~H~KtVTcL~l~s~~~rLlS~sLD~~VKVfd~t~~Kvv~s~~~~~pvLsiavs~dd~t~viGmsn 300 (487)
T KOG0310|consen 221 VWDLTTGGQLLTSMFNHNKTVTCLRLASDSTRLLSGSLDRHVKVFDTTNYKVVHSWKYPGPVLSIAVSPDDQTVVIGMSN 300 (487)
T ss_pred EEEecCCceehhhhhcccceEEEEEeecCCceEeecccccceEEEEccceEEEEeeecccceeeEEecCCCceEEEeccc
Confidence 9999955 555556569999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CC
Q 003579 620 QN 621 (809)
Q Consensus 620 ~~ 621 (809)
|.
T Consensus 301 Gl 302 (487)
T KOG0310|consen 301 GL 302 (487)
T ss_pred ce
Confidence 83
No 73
>KOG0313 consensus Microtubule binding protein YTM1 (contains WD40 repeats) [Cytoskeleton]
Probab=99.97 E-value=1.2e-28 Score=235.54 Aligned_cols=279 Identities=20% Similarity=0.310 Sum_probs=235.4
Q ss_pred CCCCcEEEEEeCCeEEEEE-CCeEEEEEC-CeeEEEEccccccEEEEEEe-----CCEEEEEeCCCcEEEEEcCCCcccc
Q 003579 55 LPKKIRALASYRDYTFAAY-GNHIAVVKR-AHQVATWSRHSAKVNLLLLF-----GEHILSIDIDGNMFIWAFKGIEENL 127 (809)
Q Consensus 55 ~~~~I~~la~~~~~~~~a~-g~~i~vw~~-~~~~~~~~~h~~~V~~l~~~-----g~~l~s~~~dg~i~vWd~~~~~~~~ 127 (809)
|+.-|.++...+...+..+ ++.+++|+. |+....+.||.++|.++++- ...+++++.|.++++|.++.++...
T Consensus 104 hdDWVSsv~~~~~~IltgsYDg~~riWd~~Gk~~~~~~Ght~~ik~v~~v~~n~~~~~fvsas~Dqtl~Lw~~~~~~~~~ 183 (423)
T KOG0313|consen 104 HDDWVSSVKGASKWILTGSYDGTSRIWDLKGKSIKTIVGHTGPIKSVAWVIKNSSSCLFVSASMDQTLRLWKWNVGENKV 183 (423)
T ss_pred chhhhhhhcccCceEEEeecCCeeEEEecCCceEEEEecCCcceeeeEEEecCCccceEEEecCCceEEEEEecCchhhh
Confidence 6777888877766666544 677999997 67778899999999988861 3469999999999999999887654
Q ss_pred ceeeeEEcCCccccEEEEeCCCCCCEEEEEeCCCeEEEEeCCC-------------------------CceEEEEcCCCC
Q 003579 128 APVGHVKLDDKFTPTCIMHPDTYLNKVIVGSQEGSLQLWNIST-------------------------KKKLYEFKGWGS 182 (809)
Q Consensus 128 ~~~~~~~~~~~~~~~~~~~p~~~~~~l~~~~~dg~i~lwd~~~-------------------------~~~~~~~~~~~~ 182 (809)
.....-.+|...+-++...+++ .++++|+.|..|.+|+..+ +.++-++.+|..
T Consensus 184 ~~~~~~~GHk~~V~sVsv~~sg--tr~~SgS~D~~lkiWs~~~~~~~~~E~~s~~rrk~~~~~~~~~~r~P~vtl~GHt~ 261 (423)
T KOG0313|consen 184 KALKVCRGHKRSVDSVSVDSSG--TRFCSGSWDTMLKIWSVETDEEDELESSSNRRRKKQKREKEGGTRTPLVTLEGHTE 261 (423)
T ss_pred hHHhHhcccccceeEEEecCCC--CeEEeecccceeeecccCCCccccccccchhhhhhhhhhhcccccCceEEeccccc
Confidence 4444455788888888889999 8999999999999999321 235677899999
Q ss_pred CEEEEEEcCCCCEEEEEeCCCeEEEEEeeCCeEEEEEeccCCCcEEEEEEecCCCCEEEEEcCCCcEEEEECCCc--eee
Q 003579 183 SISSCVSSPALDVVAVGCSDGKIHVHNVRYDEELVTFTHSMRGAVTALAFSSDGQPLLASGASSGVISIWNLEKR--RLQ 260 (809)
Q Consensus 183 ~I~~l~~sp~~~~la~g~~dg~i~iwd~~~~~~~~~~~~~~~~~V~~l~fs~dg~~~lasg~~dg~I~iwdl~~~--~~~ 260 (809)
+|.++.|++ ...+.+++.|.+|+.||+.+++.+.++.. ...+.|++.+|... +|++|+.|..|++||.+++ ..+
T Consensus 262 ~Vs~V~w~d-~~v~yS~SwDHTIk~WDletg~~~~~~~~--~ksl~~i~~~~~~~-Ll~~gssdr~irl~DPR~~~gs~v 337 (423)
T KOG0313|consen 262 PVSSVVWSD-ATVIYSVSWDHTIKVWDLETGGLKSTLTT--NKSLNCISYSPLSK-LLASGSSDRHIRLWDPRTGDGSVV 337 (423)
T ss_pred ceeeEEEcC-CCceEeecccceEEEEEeecccceeeeec--CcceeEeecccccc-eeeecCCCCceeecCCCCCCCcee
Confidence 999999999 66899999999999999999999999887 47899999999888 9999999999999999876 333
Q ss_pred eeeecccccceEEEEEecCCC-EEEEEcCCCcEEEEEeeCCCCCceeEEeccCCCCCCeeEEEecCCCEEEEEECCCCEE
Q 003579 261 SVIREAHDNAIISLHFFANEP-VLMSASADNSIKMWIFDTTDGDPRLLRFRSGHSAPPLCIRFYANGRHILSAGQDRAFR 339 (809)
Q Consensus 261 ~~~~~~h~~~V~~l~~~~~~~-~l~s~s~d~~i~vw~~~~~~~~~~~~~~~~~h~~~v~~i~~~~~~~~l~s~~~dg~i~ 339 (809)
..-..+|.+.|.++.|+|... +|++++.||++++||++... ..+..+.+|...|.++.|. ++..+++||.|..|+
T Consensus 338 ~~s~~gH~nwVssvkwsp~~~~~~~S~S~D~t~klWDvRS~k---~plydI~~h~DKvl~vdW~-~~~~IvSGGaD~~l~ 413 (423)
T KOG0313|consen 338 SQSLIGHKNWVSSVKWSPTNEFQLVSGSYDNTVKLWDVRSTK---APLYDIAGHNDKVLSVDWN-EGGLIVSGGADNKLR 413 (423)
T ss_pred EEeeecchhhhhheecCCCCceEEEEEecCCeEEEEEeccCC---CcceeeccCCceEEEEecc-CCceEEeccCcceEE
Confidence 333349999999999999655 78899999999999998764 3577778999999999998 556899999999999
Q ss_pred EEEe
Q 003579 340 LFSV 343 (809)
Q Consensus 340 ~wd~ 343 (809)
++.-
T Consensus 414 i~~~ 417 (423)
T KOG0313|consen 414 IFKG 417 (423)
T ss_pred Eecc
Confidence 9864
No 74
>KOG0305 consensus Anaphase promoting complex, Cdc20, Cdh1, and Ama1 subunits [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=99.97 E-value=1.1e-28 Score=254.64 Aligned_cols=277 Identities=20% Similarity=0.338 Sum_probs=239.7
Q ss_pred EEEEcCCCCEEEEEeCCCeEEEEEeeCCeEEEEEeccCCCcEEEEEEecCCCCEEEEEcCCCcEEEEECCCceeeeeeec
Q 003579 186 SCVSSPALDVVAVGCSDGKIHVHNVRYDEELVTFTHSMRGAVTALAFSSDGQPLLASGASSGVISIWNLEKRRLQSVIRE 265 (809)
Q Consensus 186 ~l~~sp~~~~la~g~~dg~i~iwd~~~~~~~~~~~~~~~~~V~~l~fs~dg~~~lasg~~dg~I~iwdl~~~~~~~~~~~ 265 (809)
-+.|+ ..+.||+|.. ..|.+|+..+++.......+ ...|+++.|+++|. +||+|..+|.|.|||..+.+.+..+..
T Consensus 182 lldWs-s~n~laValg-~~vylW~~~s~~v~~l~~~~-~~~vtSv~ws~~G~-~LavG~~~g~v~iwD~~~~k~~~~~~~ 257 (484)
T KOG0305|consen 182 LLDWS-SANVLAVALG-QSVYLWSASSGSVTELCSFG-EELVTSVKWSPDGS-HLAVGTSDGTVQIWDVKEQKKTRTLRG 257 (484)
T ss_pred Hhhcc-cCCeEEEEec-ceEEEEecCCCceEEeEecC-CCceEEEEECCCCC-EEEEeecCCeEEEEehhhccccccccC
Confidence 35677 4468888875 57999999999876666665 78999999999999 999999999999999999999999984
Q ss_pred ccccceEEEEEecCCCEEEEEcCCCcEEEEEeeCCCCCceeEEeccCCCCCCeeEEEecCCCEEEEEECCCCEEEEEeee
Q 003579 266 AHDNAIISLHFFANEPVLMSASADNSIKMWIFDTTDGDPRLLRFRSGHSAPPLCIRFYANGRHILSAGQDRAFRLFSVIQ 345 (809)
Q Consensus 266 ~h~~~V~~l~~~~~~~~l~s~s~d~~i~vw~~~~~~~~~~~~~~~~~h~~~v~~i~~~~~~~~l~s~~~dg~i~~wd~~~ 345 (809)
.|...|-+++|. +..+.+|+.|+.|..+|+....... ....+|...|..+.|++|++++++|+.|+.+.+||...
T Consensus 258 ~h~~rvg~laW~--~~~lssGsr~~~I~~~dvR~~~~~~---~~~~~H~qeVCgLkws~d~~~lASGgnDN~~~Iwd~~~ 332 (484)
T KOG0305|consen 258 SHASRVGSLAWN--SSVLSSGSRDGKILNHDVRISQHVV---STLQGHRQEVCGLKWSPDGNQLASGGNDNVVFIWDGLS 332 (484)
T ss_pred CcCceeEEEecc--CceEEEecCCCcEEEEEEecchhhh---hhhhcccceeeeeEECCCCCeeccCCCccceEeccCCC
Confidence 499999999998 6689999999999999998875332 24789999999999999999999999999999999632
Q ss_pred cccceecchhhHHHHHhhccchhhhhccCceeEEeeccccccccceeEEeecCCceEEEEEeeeeeecceeeecCCCCCC
Q 003579 346 DQQSRELSQRHVAKRARKLKMKEEELKLKPVIAFDCAEIRERDWCNVVTCHMDTAQAYVWRLQNFVLGEHILRPCPENPT 425 (809)
Q Consensus 346 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~ 425 (809)
..+..
T Consensus 333 ~~p~~--------------------------------------------------------------------------- 337 (484)
T KOG0305|consen 333 PEPKF--------------------------------------------------------------------------- 337 (484)
T ss_pred ccccE---------------------------------------------------------------------------
Confidence 21111
Q ss_pred CeEEEEEcCCCCEEEEEeCCCcEEEEECCCCceeeeeeCcccccccCccccEEEEEEcCC-CCEEEEEe--CcCeEEEEE
Q 003579 426 AVKACTISACGNFAVLGTAGGWIERFNLQSGISRGSYLDMSERSNYAHNGEVVGVACDST-NTLMISAG--YHGDIKVWD 502 (809)
Q Consensus 426 ~v~~v~~s~~g~~l~~g~~~g~i~i~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~-~~~l~s~~--~dg~i~iwd 502 (809)
.+ ..|..+|.+++|+|- ..+||+|+ .|+.|++||
T Consensus 338 -----------------------------------~~--------~~H~aAVKA~awcP~q~~lLAsGGGs~D~~i~fwn 374 (484)
T KOG0305|consen 338 -----------------------------------TF--------TEHTAAVKALAWCPWQSGLLATGGGSADRCIKFWN 374 (484)
T ss_pred -----------------------------------EE--------eccceeeeEeeeCCCccCceEEcCCCcccEEEEEE
Confidence 11 279999999999994 46788776 799999999
Q ss_pred CCCCceeeeeecCCCeEEEEEeeCCCEEEEE--eCCCeEEEEEcCCCeEEEEEecCCCCeeeEEECCCCCEEEEEeCCCe
Q 003579 503 FKGRDLKSRWEVGCSLVKIVYHRVNGLLATV--ADDLVIRLFDVVALRMVRKFEGHTDRITDFCFSEDGKWLLSSGMDGS 580 (809)
Q Consensus 503 ~~~~~~~~~~~~~~~i~~~~~s~~~~~la~~--~~d~~I~v~d~~~~~~~~~~~~h~~~I~~l~fspdg~~l~s~s~D~~ 580 (809)
..+++.+..+...+.|.++.|++..+-++++ ..+..|.||+..+.+.+..+.||..+|..+++||||..+++|+.|.+
T Consensus 375 ~~~g~~i~~vdtgsQVcsL~Wsk~~kEi~sthG~s~n~i~lw~~ps~~~~~~l~gH~~RVl~la~SPdg~~i~t~a~DET 454 (484)
T KOG0305|consen 375 TNTGARIDSVDTGSQVCSLIWSKKYKELLSTHGYSENQITLWKYPSMKLVAELLGHTSRVLYLALSPDGETIVTGAADET 454 (484)
T ss_pred cCCCcEecccccCCceeeEEEcCCCCEEEEecCCCCCcEEEEeccccceeeeecCCcceeEEEEECCCCCEEEEecccCc
Confidence 9999999999999999999999998766664 45779999999999999999999999999999999999999999999
Q ss_pred EEEEEcCCc
Q 003579 581 LRIWDVILA 589 (809)
Q Consensus 581 I~vwd~~~~ 589 (809)
+++|++-+.
T Consensus 455 lrfw~~f~~ 463 (484)
T KOG0305|consen 455 LRFWNLFDE 463 (484)
T ss_pred EEeccccCC
Confidence 999998764
No 75
>KOG0643 consensus Translation initiation factor 3, subunit i (eIF-3i)/TGF-beta receptor-interacting protein (TRIP-1) [Translation, ribosomal structure and biogenesis; Signal transduction mechanisms]
Probab=99.97 E-value=5.3e-28 Score=220.51 Aligned_cols=298 Identities=17% Similarity=0.261 Sum_probs=239.2
Q ss_pred EccccccEEEEEE--eCCEEEEEeCCCcEEEEEcCCCccccceeeeEEcCCccccEEEEeCCCCCCEEEEEeCCCeEEEE
Q 003579 89 WSRHSAKVNLLLL--FGEHILSIDIDGNMFIWAFKGIEENLAPVGHVKLDDKFTPTCIMHPDTYLNKVIVGSQEGSLQLW 166 (809)
Q Consensus 89 ~~~h~~~V~~l~~--~g~~l~s~~~dg~i~vWd~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~l~~~~~dg~i~lw 166 (809)
+.||..+++.+.+ +|+.|.+|+.|.+..||--.+++. +.++..|.+.+++|.+..+. +++++|+.|.++++|
T Consensus 6 l~GHERplTqiKyN~eGDLlFscaKD~~~~vw~s~nGer----lGty~GHtGavW~~Did~~s--~~liTGSAD~t~kLW 79 (327)
T KOG0643|consen 6 LQGHERPLTQIKYNREGDLLFSCAKDSTPTVWYSLNGER----LGTYDGHTGAVWCCDIDWDS--KHLITGSADQTAKLW 79 (327)
T ss_pred cccCccccceEEecCCCcEEEEecCCCCceEEEecCCce----eeeecCCCceEEEEEecCCc--ceeeeccccceeEEE
Confidence 7899999999998 699999999999999999988888 89999999999999999999 899999999999999
Q ss_pred eCCCCceEEEEcCCCCCEEEEEEcCCCCEEEEEeC-----CCeEEEEEee-------CCeEEEEEeccCCCcEEEEEEec
Q 003579 167 NISTKKKLYEFKGWGSSISSCVSSPALDVVAVGCS-----DGKIHVHNVR-------YDEELVTFTHSMRGAVTALAFSS 234 (809)
Q Consensus 167 d~~~~~~~~~~~~~~~~I~~l~~sp~~~~la~g~~-----dg~i~iwd~~-------~~~~~~~~~~~~~~~V~~l~fs~ 234 (809)
|+++|+++.+++. ..+|..+.|+++|++++.... .+.|.++|++ ..++...+..+ ...++.+-|.|
T Consensus 80 Dv~tGk~la~~k~-~~~Vk~~~F~~~gn~~l~~tD~~mg~~~~v~~fdi~~~~~~~~s~ep~~kI~t~-~skit~a~Wg~ 157 (327)
T KOG0643|consen 80 DVETGKQLATWKT-NSPVKRVDFSFGGNLILASTDKQMGYTCFVSVFDIRDDSSDIDSEEPYLKIPTP-DSKITSALWGP 157 (327)
T ss_pred EcCCCcEEEEeec-CCeeEEEeeccCCcEEEEEehhhcCcceEEEEEEccCChhhhcccCceEEecCC-ccceeeeeecc
Confidence 9999999999986 789999999999998887654 3789999998 44567777776 68999999999
Q ss_pred CCCCEEEEEcCCCcEEEEECCCceeeeeeecccccceEEEEEecCCCEEEEEcCCCcEEEEEeeCCCCCceeEEeccCCC
Q 003579 235 DGQPLLASGASSGVISIWNLEKRRLQSVIREAHDNAIISLHFFANEPVLMSASADNSIKMWIFDTTDGDPRLLRFRSGHS 314 (809)
Q Consensus 235 dg~~~lasg~~dg~I~iwdl~~~~~~~~~~~~h~~~V~~l~~~~~~~~l~s~s~d~~i~vw~~~~~~~~~~~~~~~~~h~ 314 (809)
-++ .|++|..+|.|.+||+++++........|...|+.++++++..++++++.|.+-++||+..- .+++.+ .-.
T Consensus 158 l~~-~ii~Ghe~G~is~~da~~g~~~v~s~~~h~~~Ind~q~s~d~T~FiT~s~Dttakl~D~~tl----~v~Kty-~te 231 (327)
T KOG0643|consen 158 LGE-TIIAGHEDGSISIYDARTGKELVDSDEEHSSKINDLQFSRDRTYFITGSKDTTAKLVDVRTL----EVLKTY-TTE 231 (327)
T ss_pred cCC-EEEEecCCCcEEEEEcccCceeeechhhhccccccccccCCcceEEecccCccceeeeccce----eeEEEe-eec
Confidence 999 89999999999999999985554444489999999999999999999999999999998876 444444 356
Q ss_pred CCCeeEEEecCCCEEEEEECCCCEEEEEeeecc-cceecchhhHHHHHhhccchhhhhccCceeEEeeccccccccceeE
Q 003579 315 APPLCIRFYANGRHILSAGQDRAFRLFSVIQDQ-QSRELSQRHVAKRARKLKMKEEELKLKPVIAFDCAEIRERDWCNVV 393 (809)
Q Consensus 315 ~~v~~i~~~~~~~~l~s~~~dg~i~~wd~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~ 393 (809)
.||++.+++|...+++.|+..... |+.+-. ....+...-
T Consensus 232 ~PvN~aaisP~~d~VilgGGqeA~---dVTTT~~r~GKFEArF------------------------------------- 271 (327)
T KOG0643|consen 232 RPVNTAAISPLLDHVILGGGQEAM---DVTTTSTRAGKFEARF------------------------------------- 271 (327)
T ss_pred ccccceecccccceEEecCCceee---eeeeecccccchhhhH-------------------------------------
Confidence 789999999966666655433222 221111 111010000
Q ss_pred EeecCCceEEEEEeeeeeecceeeecCCCCCCCeEEEEEcCCCCEEEEEeCCCcEEEEECCC
Q 003579 394 TCHMDTAQAYVWRLQNFVLGEHILRPCPENPTAVKACTISACGNFAVLGTAGGWIERFNLQS 455 (809)
Q Consensus 394 ~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~v~~v~~s~~g~~l~~g~~~g~i~i~~~~~ 455 (809)
|++- -+..+....+|-++|.+++++|+|+..++|+.||.|++.-...
T Consensus 272 -----------yh~i----~eEEigrvkGHFGPINsvAfhPdGksYsSGGEDG~VR~h~Fd~ 318 (327)
T KOG0643|consen 272 -----------YHLI----FEEEIGRVKGHFGPINSVAFHPDGKSYSSGGEDGYVRLHHFDS 318 (327)
T ss_pred -----------HHHH----HHHHhccccccccCcceeEECCCCcccccCCCCceEEEEEecc
Confidence 0000 0111223346779999999999999999999999999876554
No 76
>KOG1446 consensus Histone H3 (Lys4) methyltransferase complex and RNA cleavage factor II complex, subunit SWD2 [RNA processing and modification; Chromatin structure and dynamics; Posttranslational modification, protein turnover, chaperones]
Probab=99.97 E-value=2.2e-27 Score=222.98 Aligned_cols=281 Identities=15% Similarity=0.210 Sum_probs=239.3
Q ss_pred CCcEEEEEEecCCCCEEEEEcCCCcEEEEECCCceeeeeeecccccceEEEEEecCCCEEEEEcC--CCcEEEEEeeCCC
Q 003579 224 RGAVTALAFSSDGQPLLASGASSGVISIWNLEKRRLQSVIREAHDNAIISLHFFANEPVLMSASA--DNSIKMWIFDTTD 301 (809)
Q Consensus 224 ~~~V~~l~fs~dg~~~lasg~~dg~I~iwdl~~~~~~~~~~~~h~~~V~~l~~~~~~~~l~s~s~--d~~i~vw~~~~~~ 301 (809)
.+.|.++.|+++|. +|++++.|..|++||..+++.+.++. .+..++..++|......++.++. |.+||.-++...
T Consensus 14 ~~~i~sl~fs~~G~-~litss~dDsl~LYd~~~g~~~~ti~-skkyG~~~~~Fth~~~~~i~sStk~d~tIryLsl~dN- 90 (311)
T KOG1446|consen 14 NGKINSLDFSDDGL-LLITSSEDDSLRLYDSLSGKQVKTIN-SKKYGVDLACFTHHSNTVIHSSTKEDDTIRYLSLHDN- 90 (311)
T ss_pred CCceeEEEecCCCC-EEEEecCCCeEEEEEcCCCceeeEee-cccccccEEEEecCCceEEEccCCCCCceEEEEeecC-
Confidence 67899999999999 88888999999999999999999998 77788999999988887877776 899999998877
Q ss_pred CCceeEEeccCCCCCCeeEEEecCCCEEEEEECCCCEEEEEeeecccceecchhhHHHHHhhccchhhhhccCceeEEee
Q 003579 302 GDPRLLRFRSGHSAPPLCIRFYANGRHILSAGQDRAFRLFSVIQDQQSRELSQRHVAKRARKLKMKEEELKLKPVIAFDC 381 (809)
Q Consensus 302 ~~~~~~~~~~~h~~~v~~i~~~~~~~~l~s~~~dg~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~ 381 (809)
+.++.+.||...|.+++.+|-+..+++++.|++|++||++...+...+..
T Consensus 91 ---kylRYF~GH~~~V~sL~~sP~~d~FlS~S~D~tvrLWDlR~~~cqg~l~~--------------------------- 140 (311)
T KOG1446|consen 91 ---KYLRYFPGHKKRVNSLSVSPKDDTFLSSSLDKTVRLWDLRVKKCQGLLNL--------------------------- 140 (311)
T ss_pred ---ceEEEcCCCCceEEEEEecCCCCeEEecccCCeEEeeEecCCCCceEEec---------------------------
Confidence 79999999999999999999889999999999999999986655433321
Q ss_pred ccccccccceeEEeecCCceEEEEEeeeeeecceeeecCCCCCCCeEEEEEcCCCCEEEEEeCCCcEEEEECCCCce--e
Q 003579 382 AEIRERDWCNVVTCHMDTAQAYVWRLQNFVLGEHILRPCPENPTAVKACTISACGNFAVLGTAGGWIERFNLQSGIS--R 459 (809)
Q Consensus 382 ~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~v~~v~~s~~g~~l~~g~~~g~i~i~~~~~~~~--~ 459 (809)
..-..++++|.|-++|++...+.|++||+++-.. .
T Consensus 141 -------------------------------------------~~~pi~AfDp~GLifA~~~~~~~IkLyD~Rs~dkgPF 177 (311)
T KOG1446|consen 141 -------------------------------------------SGRPIAAFDPEGLIFALANGSELIKLYDLRSFDKGPF 177 (311)
T ss_pred -------------------------------------------CCCcceeECCCCcEEEEecCCCeEEEEEecccCCCCc
Confidence 3445679999999999999999999999986422 2
Q ss_pred eeeeCcccccccCccccEEEEEEcCCCCEEEEEeCcCeEEEEECCCCceeeeeecCC----CeEEEEEeeCCCEEEEEeC
Q 003579 460 GSYLDMSERSNYAHNGEVVGVACDSTNTLMISAGYHGDIKVWDFKGRDLKSRWEVGC----SLVKIVYHRVNGLLATVAD 535 (809)
Q Consensus 460 ~~~~~~~~~~~~~h~~~v~~l~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~----~i~~~~~s~~~~~la~~~~ 535 (809)
..+.. ..+.....+.+.|+|+|++++.+...+.+++.|.-+|..+.++.... -....+|+||++++.+|++
T Consensus 178 ~tf~i-----~~~~~~ew~~l~FS~dGK~iLlsT~~s~~~~lDAf~G~~~~tfs~~~~~~~~~~~a~ftPds~Fvl~gs~ 252 (311)
T KOG1446|consen 178 TTFSI-----TDNDEAEWTDLEFSPDGKSILLSTNASFIYLLDAFDGTVKSTFSGYPNAGNLPLSATFTPDSKFVLSGSD 252 (311)
T ss_pred eeEcc-----CCCCccceeeeEEcCCCCEEEEEeCCCcEEEEEccCCcEeeeEeeccCCCCcceeEEECCCCcEEEEecC
Confidence 22221 11456789999999999999999999999999999999988887652 2357899999999999999
Q ss_pred CCeEEEEEcCCCeEEEEEec-CCCCeeeEEECCCCCEEEEEeCCCeEEEEEcC
Q 003579 536 DLVIRLFDVVALRMVRKFEG-HTDRITDFCFSEDGKWLLSSGMDGSLRIWDVI 587 (809)
Q Consensus 536 d~~I~v~d~~~~~~~~~~~~-h~~~I~~l~fspdg~~l~s~s~D~~I~vwd~~ 587 (809)
||+|++|++++++.+..+.+ +.+++.++.|+|.--.++|+ +..+-+|=..
T Consensus 253 dg~i~vw~~~tg~~v~~~~~~~~~~~~~~~fnP~~~mf~sa--~s~l~fw~p~ 303 (311)
T KOG1446|consen 253 DGTIHVWNLETGKKVAVLRGPNGGPVSCVRFNPRYAMFVSA--SSNLVFWLPD 303 (311)
T ss_pred CCcEEEEEcCCCcEeeEecCCCCCCccccccCCceeeeeec--CceEEEEecc
Confidence 99999999999999999999 78999999999986555555 5678888654
No 77
>KOG0640 consensus mRNA cleavage stimulating factor complex; subunit 1 [RNA processing and modification]
Probab=99.97 E-value=6.8e-29 Score=230.62 Aligned_cols=289 Identities=21% Similarity=0.328 Sum_probs=241.1
Q ss_pred cCCCcEEEEEEecCCCCEEEEEcCCCcEEEEECCC------------c------eeeeeeecccccceEEEEEecCCCEE
Q 003579 222 SMRGAVTALAFSSDGQPLLASGASSGVISIWNLEK------------R------RLQSVIREAHDNAIISLHFFANEPVL 283 (809)
Q Consensus 222 ~~~~~V~~l~fs~dg~~~lasg~~dg~I~iwdl~~------------~------~~~~~~~~~h~~~V~~l~~~~~~~~l 283 (809)
.|++++.+.+|++||. ++|+|+.|..|+|.|.+. + -.++++. .|...|+++.|+|...+|
T Consensus 110 ~HK~~cR~aafs~DG~-lvATGsaD~SIKildvermlaks~~~em~~~~~qa~hPvIRTlY-DH~devn~l~FHPre~IL 187 (430)
T KOG0640|consen 110 SHKSPCRAAAFSPDGS-LVATGSADASIKILDVERMLAKSKPKEMISGDTQARHPVIRTLY-DHVDEVNDLDFHPRETIL 187 (430)
T ss_pred ecccceeeeeeCCCCc-EEEccCCcceEEEeehhhhhhhcchhhhccCCcccCCceEeehh-hccCcccceeecchhheE
Confidence 3489999999999999 999999999999999861 1 2345555 799999999999999999
Q ss_pred EEEcCCCcEEEEEeeCCCCCceeEEeccCCCCCCeeEEEecCCCEEEEEECCCCEEEEEeeecccceecchhhHHHHHhh
Q 003579 284 MSASADNSIKMWIFDTTDGDPRLLRFRSGHSAPPLCIRFYANGRHILSAGQDRAFRLFSVIQDQQSRELSQRHVAKRARK 363 (809)
Q Consensus 284 ~s~s~d~~i~vw~~~~~~~~~~~~~~~~~h~~~v~~i~~~~~~~~l~s~~~dg~i~~wd~~~~~~~~~~~~~~~~~~~~~ 363 (809)
++++.|++|+++|+...... +..+.+ ....+|.++.|+|.|.+|+.|..-..+++||+.+-++-..
T Consensus 188 iS~srD~tvKlFDfsK~saK-rA~K~~-qd~~~vrsiSfHPsGefllvgTdHp~~rlYdv~T~Qcfvs------------ 253 (430)
T KOG0640|consen 188 ISGSRDNTVKLFDFSKTSAK-RAFKVF-QDTEPVRSISFHPSGEFLLVGTDHPTLRLYDVNTYQCFVS------------ 253 (430)
T ss_pred EeccCCCeEEEEecccHHHH-HHHHHh-hccceeeeEeecCCCceEEEecCCCceeEEeccceeEeee------------
Confidence 99999999999999765322 222222 3456899999999999999999999999999876543221
Q ss_pred ccchhhhhccCceeEEeeccccccccceeEEeecCCceEEEEEeeeeeecceeeecCCCCCCCeEEEEEcCCCCEEEEEe
Q 003579 364 LKMKEEELKLKPVIAFDCAEIRERDWCNVVTCHMDTAQAYVWRLQNFVLGEHILRPCPENPTAVKACTISACGNFAVLGT 443 (809)
Q Consensus 364 ~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~v~~v~~s~~g~~l~~g~ 443 (809)
..+..+|.+.|+++.+++.|+..++|+
T Consensus 254 -----------------------------------------------------anPd~qht~ai~~V~Ys~t~~lYvTaS 280 (430)
T KOG0640|consen 254 -----------------------------------------------------ANPDDQHTGAITQVRYSSTGSLYVTAS 280 (430)
T ss_pred -----------------------------------------------------cCcccccccceeEEEecCCccEEEEec
Confidence 123446779999999999999999999
Q ss_pred CCCcEEEEECCCCceeeeeeCcccccccCccc-cEEEEEEcCCCCEEEEEeCcCeEEEEECCCCceeeeeecC------C
Q 003579 444 AGGWIERFNLQSGISRGSYLDMSERSNYAHNG-EVVGVACDSTNTLMISAGYHGDIKVWDFKGRDLKSRWEVG------C 516 (809)
Q Consensus 444 ~~g~i~i~~~~~~~~~~~~~~~~~~~~~~h~~-~v~~l~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~------~ 516 (809)
.||.|++||--+++++..+. .+|.+ .|.+..|..+++++++.|.|..+++|.+.+++.+..+... .
T Consensus 281 kDG~IklwDGVS~rCv~t~~-------~AH~gsevcSa~Ftkn~kyiLsSG~DS~vkLWEi~t~R~l~~YtGAg~tgrq~ 353 (430)
T KOG0640|consen 281 KDGAIKLWDGVSNRCVRTIG-------NAHGGSEVCSAVFTKNGKYILSSGKDSTVKLWEISTGRMLKEYTGAGTTGRQK 353 (430)
T ss_pred cCCcEEeeccccHHHHHHHH-------hhcCCceeeeEEEccCCeEEeecCCcceeeeeeecCCceEEEEecCCcccchh
Confidence 99999999999999999887 37765 7899999999999999999999999999999999988764 2
Q ss_pred CeEEEEEeeCCCEEEEEeC-CCeEEEEEcCCCeEEEEE-ecCCCCeeeEEECCCCCEEEEEeCCCeEEEEEc
Q 003579 517 SLVKIVYHRVNGLLATVAD-DLVIRLFDVVALRMVRKF-EGHTDRITDFCFSEDGKWLLSSGMDGSLRIWDV 586 (809)
Q Consensus 517 ~i~~~~~s~~~~~la~~~~-d~~I~v~d~~~~~~~~~~-~~h~~~I~~l~fspdg~~l~s~s~D~~I~vwd~ 586 (809)
--+...|+....+++.-.+ .+.+.-||.++...+..+ -||.+.+..+.-||.+.-+++||.|..+|+|--
T Consensus 354 ~rtqAvFNhtEdyVl~pDEas~slcsWdaRtadr~~l~slgHn~a~R~i~HSP~~p~FmTcsdD~raRFWyr 425 (430)
T KOG0640|consen 354 HRTQAVFNHTEDYVLFPDEASNSLCSWDARTADRVALLSLGHNGAVRWIVHSPVEPAFMTCSDDFRARFWYR 425 (430)
T ss_pred hhhhhhhcCccceEEccccccCceeeccccchhhhhhcccCCCCCceEEEeCCCCCceeeecccceeeeeee
Confidence 2345667777777776644 578899999988665544 379999999999999999999999999999964
No 78
>KOG0288 consensus WD40 repeat protein TipD [General function prediction only]
Probab=99.97 E-value=2.1e-29 Score=243.33 Aligned_cols=284 Identities=22% Similarity=0.385 Sum_probs=246.7
Q ss_pred eeeecccccceEEEEEecCCCEEEEEcCCCcEEEEEeeCCCCCceeEEeccCCCCCCeeEEEecCCCEEEEEECCCCEEE
Q 003579 261 SVIREAHDNAIISLHFFANEPVLMSASADNSIKMWIFDTTDGDPRLLRFRSGHSAPPLCIRFYANGRHILSAGQDRAFRL 340 (809)
Q Consensus 261 ~~~~~~h~~~V~~l~~~~~~~~l~s~s~d~~i~vw~~~~~~~~~~~~~~~~~h~~~v~~i~~~~~~~~l~s~~~dg~i~~ 340 (809)
..+. .|.+.+..+.|.++...|++++.|..|++|+..... .....++.|..++++.+.|.++++++++++.|+.+++
T Consensus 169 ~~ld-~h~gev~~v~~l~~sdtlatgg~Dr~Ik~W~v~~~k--~~~~~tLaGs~g~it~~d~d~~~~~~iAas~d~~~r~ 245 (459)
T KOG0288|consen 169 FVLD-AHEGEVHDVEFLRNSDTLATGGSDRIIKLWNVLGEK--SELISTLAGSLGNITSIDFDSDNKHVIAASNDKNLRL 245 (459)
T ss_pred hhhh-ccccccceeEEccCcchhhhcchhhhhhhhhcccch--hhhhhhhhccCCCcceeeecCCCceEEeecCCCceee
Confidence 3444 899999999999998999999999999999877654 3567778889999999999999999999999999999
Q ss_pred EEeeecccceecchhhHHHHHhhccchhhhhccCceeEEeeccccccccceeEEeecCCceEEEEEeeeeeecceeeecC
Q 003579 341 FSVIQDQQSRELSQRHVAKRARKLKMKEEELKLKPVIAFDCAEIRERDWCNVVTCHMDTAQAYVWRLQNFVLGEHILRPC 420 (809)
Q Consensus 341 wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~ 420 (809)
|++...+....+
T Consensus 246 Wnvd~~r~~~TL-------------------------------------------------------------------- 257 (459)
T KOG0288|consen 246 WNVDSLRLRHTL-------------------------------------------------------------------- 257 (459)
T ss_pred eeccchhhhhhh--------------------------------------------------------------------
Confidence 998765443333
Q ss_pred CCCCCCeEEEEEcCCCCEEEEEeCCCcEEEEECCCCceeeeeeCcccccccCccccEEEEEEcCCCCEEEEEeCcCeEEE
Q 003579 421 PENPTAVKACTISACGNFAVLGTAGGWIERFNLQSGISRGSYLDMSERSNYAHNGEVVGVACDSTNTLMISAGYHGDIKV 500 (809)
Q Consensus 421 ~~~~~~v~~v~~s~~g~~l~~g~~~g~i~i~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~l~s~~~dg~i~i 500 (809)
.+|...|+++.+......++.|+.|.+|+.||++++.+..++. ....+..++.+ ...++++-.|++|++
T Consensus 258 sGHtdkVt~ak~~~~~~~vVsgs~DRtiK~WDl~k~~C~kt~l---------~~S~cnDI~~~--~~~~~SgH~DkkvRf 326 (459)
T KOG0288|consen 258 SGHTDKVTAAKFKLSHSRVVSGSADRTIKLWDLQKAYCSKTVL---------PGSQCNDIVCS--ISDVISGHFDKKVRF 326 (459)
T ss_pred cccccceeeehhhccccceeeccccchhhhhhhhhhheecccc---------ccccccceEec--ceeeeecccccceEE
Confidence 3577899999999888889999999999999999988877663 33455666665 556888899999999
Q ss_pred EECCCCceeeeeecCCCeEEEEEeeCCCEEEEEeCCCeEEEEEcCCCeEEEEEecC----CCCeeeEEECCCCCEEEEEe
Q 003579 501 WDFKGRDLKSRWEVGCSLVKIVYHRVNGLLATVADDLVIRLFDVVALRMVRKFEGH----TDRITDFCFSEDGKWLLSSG 576 (809)
Q Consensus 501 wd~~~~~~~~~~~~~~~i~~~~~s~~~~~la~~~~d~~I~v~d~~~~~~~~~~~~h----~~~I~~l~fspdg~~l~s~s 576 (809)
||..+..+....+.++.|+++..++++..|.+.+.|.++.+.|+.+.+....+... ....+.+.|||+++|+++||
T Consensus 327 wD~Rs~~~~~sv~~gg~vtSl~ls~~g~~lLsssRDdtl~viDlRt~eI~~~~sA~g~k~asDwtrvvfSpd~~YvaAGS 406 (459)
T KOG0288|consen 327 WDIRSADKTRSVPLGGRVTSLDLSMDGLELLSSSRDDTLKVIDLRTKEIRQTFSAEGFKCASDWTRVVFSPDGSYVAAGS 406 (459)
T ss_pred EeccCCceeeEeecCcceeeEeeccCCeEEeeecCCCceeeeecccccEEEEeeccccccccccceeEECCCCceeeecc
Confidence 99999999999999999999999999999999999999999999999888887642 23488999999999999999
Q ss_pred CCCeEEEEEcCCccEEEEeeeCc---ceEEEEEcCCCCeEEEEEeCCCeEEEee
Q 003579 577 MDGSLRIWDVILARQIDAIHVDV---SITALSLSPNMDVLATAHVDQNGVYLWV 627 (809)
Q Consensus 577 ~D~~I~vwd~~~~~~i~~~~~~~---~v~~l~~spdg~~lat~~~d~~~i~lW~ 627 (809)
.||.|+||++.+|++...+.... .|++++|+|.|..|++++.+. .+.+|.
T Consensus 407 ~dgsv~iW~v~tgKlE~~l~~s~s~~aI~s~~W~~sG~~Llsadk~~-~v~lW~ 459 (459)
T KOG0288|consen 407 ADGSVYIWSVFTGKLEKVLSLSTSNAAITSLSWNPSGSGLLSADKQK-AVTLWT 459 (459)
T ss_pred CCCcEEEEEccCceEEEEeccCCCCcceEEEEEcCCCchhhcccCCc-ceEecC
Confidence 99999999999999988886432 499999999999999999988 699994
No 79
>KOG0288 consensus WD40 repeat protein TipD [General function prediction only]
Probab=99.97 E-value=1.5e-29 Score=244.21 Aligned_cols=276 Identities=19% Similarity=0.346 Sum_probs=240.3
Q ss_pred CCCcEEEEEEecCCCCEEEEEcCCCcEEEEECCCce--eeeeeecccccceEEEEEecCCCEEEEEcCCCcEEEEEeeCC
Q 003579 223 MRGAVTALAFSSDGQPLLASGASSGVISIWNLEKRR--LQSVIREAHDNAIISLHFFANEPVLMSASADNSIKMWIFDTT 300 (809)
Q Consensus 223 ~~~~V~~l~fs~dg~~~lasg~~dg~I~iwdl~~~~--~~~~~~~~h~~~V~~l~~~~~~~~l~s~s~d~~i~vw~~~~~ 300 (809)
|.+.+..+.|-++.. .|++|+.|..|.+|+....+ .+.++. +..++|+++.|.+++..+++++.|+.+++|+++..
T Consensus 174 h~gev~~v~~l~~sd-tlatgg~Dr~Ik~W~v~~~k~~~~~tLa-Gs~g~it~~d~d~~~~~~iAas~d~~~r~Wnvd~~ 251 (459)
T KOG0288|consen 174 HEGEVHDVEFLRNSD-TLATGGSDRIIKLWNVLGEKSELISTLA-GSLGNITSIDFDSDNKHVIAASNDKNLRLWNVDSL 251 (459)
T ss_pred cccccceeEEccCcc-hhhhcchhhhhhhhhcccchhhhhhhhh-ccCCCcceeeecCCCceEEeecCCCceeeeeccch
Confidence 378899999999866 79999999999999988776 666776 77889999999999999999999999999998876
Q ss_pred CCCceeEEeccCCCCCCeeEEEecCCCEEEEEECCCCEEEEEeeecccceecchhhHHHHHhhccchhhhhccCceeEEe
Q 003579 301 DGDPRLLRFRSGHSAPPLCIRFYANGRHILSAGQDRAFRLFSVIQDQQSRELSQRHVAKRARKLKMKEEELKLKPVIAFD 380 (809)
Q Consensus 301 ~~~~~~~~~~~~h~~~v~~i~~~~~~~~l~s~~~dg~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~ 380 (809)
+...++.||...|+++.|......+++|+.|.+++.||+....+.+++..+
T Consensus 252 ----r~~~TLsGHtdkVt~ak~~~~~~~vVsgs~DRtiK~WDl~k~~C~kt~l~~------------------------- 302 (459)
T KOG0288|consen 252 ----RLRHTLSGHTDKVTAAKFKLSHSRVVSGSADRTIKLWDLQKAYCSKTVLPG------------------------- 302 (459)
T ss_pred ----hhhhhhcccccceeeehhhccccceeeccccchhhhhhhhhhheecccccc-------------------------
Confidence 788889999999999999987767999999999999999876555443211
Q ss_pred eccccccccceeEEeecCCceEEEEEeeeeeecceeeecCCCCCCCeEEEEEcCCCCEEEEEeCCCcEEEEECCCCceee
Q 003579 381 CAEIRERDWCNVVTCHMDTAQAYVWRLQNFVLGEHILRPCPENPTAVKACTISACGNFAVLGTAGGWIERFNLQSGISRG 460 (809)
Q Consensus 381 ~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~v~~v~~s~~g~~l~~g~~~g~i~i~~~~~~~~~~ 460 (809)
..+..++.+ +..+++|..|+.|++||.+++....
T Consensus 303 --------------------------------------------S~cnDI~~~--~~~~~SgH~DkkvRfwD~Rs~~~~~ 336 (459)
T KOG0288|consen 303 --------------------------------------------SQCNDIVCS--ISDVISGHFDKKVRFWDIRSADKTR 336 (459)
T ss_pred --------------------------------------------ccccceEec--ceeeeecccccceEEEeccCCceee
Confidence 233333333 5677889999999999999999988
Q ss_pred eeeCcccccccCccccEEEEEEcCCCCEEEEEeCcCeEEEEECCCCceeeeeecC-----CCeEEEEEeeCCCEEEEEeC
Q 003579 461 SYLDMSERSNYAHNGEVVGVACDSTNTLMISAGYHGDIKVWDFKGRDLKSRWEVG-----CSLVKIVYHRVNGLLATVAD 535 (809)
Q Consensus 461 ~~~~~~~~~~~~h~~~v~~l~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~-----~~i~~~~~s~~~~~la~~~~ 535 (809)
..+ .+ +.|+++..++++..+.+++.|.++.+.|+.+.+....+... +..+.+.|||++.|+|+|+.
T Consensus 337 sv~--------~g-g~vtSl~ls~~g~~lLsssRDdtl~viDlRt~eI~~~~sA~g~k~asDwtrvvfSpd~~YvaAGS~ 407 (459)
T KOG0288|consen 337 SVP--------LG-GRVTSLDLSMDGLELLSSSRDDTLKVIDLRTKEIRQTFSAEGFKCASDWTRVVFSPDGSYVAAGSA 407 (459)
T ss_pred Eee--------cC-cceeeEeeccCCeEEeeecCCCceeeeecccccEEEEeeccccccccccceeEECCCCceeeeccC
Confidence 875 34 49999999999999999999999999999999888877543 67899999999999999999
Q ss_pred CCeEEEEEcCCCeEEEEEecCCCC--eeeEEECCCCCEEEEEeCCCeEEEE
Q 003579 536 DLVIRLFDVVALRMVRKFEGHTDR--ITDFCFSEDGKWLLSSGMDGSLRIW 584 (809)
Q Consensus 536 d~~I~v~d~~~~~~~~~~~~h~~~--I~~l~fspdg~~l~s~s~D~~I~vw 584 (809)
||.|+||++.++++...+...... |++++|+|.|..|++++.++.+.+|
T Consensus 408 dgsv~iW~v~tgKlE~~l~~s~s~~aI~s~~W~~sG~~Llsadk~~~v~lW 458 (459)
T KOG0288|consen 408 DGSVYIWSVFTGKLEKVLSLSTSNAAITSLSWNPSGSGLLSADKQKAVTLW 458 (459)
T ss_pred CCcEEEEEccCceEEEEeccCCCCcceEEEEEcCCCchhhcccCCcceEec
Confidence 999999999999999998875544 9999999999999999999999999
No 80
>KOG0310 consensus Conserved WD40 repeat-containing protein [Function unknown]
Probab=99.97 E-value=2.1e-28 Score=241.91 Aligned_cols=280 Identities=20% Similarity=0.293 Sum_probs=236.8
Q ss_pred CCCCEEEEEEcCCCC-EEEEEeCCCeEEEEEeeCCeEEEEEeccCCCcEEEEEEecCCCCEEEEEcCCCcEEEEECCCce
Q 003579 180 WGSSISSCVSSPALD-VVAVGCSDGKIHVHNVRYDEELVTFTHSMRGAVTALAFSSDGQPLLASGASSGVISIWNLEKRR 258 (809)
Q Consensus 180 ~~~~I~~l~~sp~~~-~la~g~~dg~i~iwd~~~~~~~~~~~~~~~~~V~~l~fs~dg~~~lasg~~dg~I~iwdl~~~~ 258 (809)
..+.|++++|+|... -+|+++ .-.+.||+..+.....++... +..|++++|..||+ +||+|+..|.|++||+.+..
T Consensus 25 e~~~vssl~fsp~~P~d~aVt~-S~rvqly~~~~~~~~k~~srF-k~~v~s~~fR~DG~-LlaaGD~sG~V~vfD~k~r~ 101 (487)
T KOG0310|consen 25 EHNSVSSLCFSPKHPYDFAVTS-SVRVQLYSSVTRSVRKTFSRF-KDVVYSVDFRSDGR-LLAAGDESGHVKVFDMKSRV 101 (487)
T ss_pred ccCcceeEecCCCCCCceEEec-ccEEEEEecchhhhhhhHHhh-ccceeEEEeecCCe-EEEccCCcCcEEEeccccHH
Confidence 357899999999543 344444 357999999888777776655 67899999999999 99999999999999988877
Q ss_pred eeeeeecccccceEEEEEecCCC-EEEEEcCCCcEEEEEeeCCCCCceeEEeccCCCCCCeeEEEec-CCCEEEEEECCC
Q 003579 259 LQSVIREAHDNAIISLHFFANEP-VLMSASADNSIKMWIFDTTDGDPRLLRFRSGHSAPPLCIRFYA-NGRHILSAGQDR 336 (809)
Q Consensus 259 ~~~~~~~~h~~~V~~l~~~~~~~-~l~s~s~d~~i~vw~~~~~~~~~~~~~~~~~h~~~v~~i~~~~-~~~~l~s~~~dg 336 (809)
.+..+. +|+.+|..+.|+|.+. .+++|+.|+.+++||++... ....+.+|...|.|.+++| ++..++|||.||
T Consensus 102 iLR~~~-ah~apv~~~~f~~~d~t~l~s~sDd~v~k~~d~s~a~----v~~~l~~htDYVR~g~~~~~~~hivvtGsYDg 176 (487)
T KOG0310|consen 102 ILRQLY-AHQAPVHVTKFSPQDNTMLVSGSDDKVVKYWDLSTAY----VQAELSGHTDYVRCGDISPANDHIVVTGSYDG 176 (487)
T ss_pred HHHHHh-hccCceeEEEecccCCeEEEecCCCceEEEEEcCCcE----EEEEecCCcceeEeeccccCCCeEEEecCCCc
Confidence 888888 9999999999999654 78888899999999988763 4557889999999999999 566899999999
Q ss_pred CEEEEEeeecc-cceecchhhHHHHHhhccchhhhhccCceeEEeeccccccccceeEEeecCCceEEEEEeeeeeecce
Q 003579 337 AFRLFSVIQDQ-QSRELSQRHVAKRARKLKMKEEELKLKPVIAFDCAEIRERDWCNVVTCHMDTAQAYVWRLQNFVLGEH 415 (809)
Q Consensus 337 ~i~~wd~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~ 415 (809)
.|++||++... ...++
T Consensus 177 ~vrl~DtR~~~~~v~el--------------------------------------------------------------- 193 (487)
T KOG0310|consen 177 KVRLWDTRSLTSRVVEL--------------------------------------------------------------- 193 (487)
T ss_pred eEEEEEeccCCceeEEe---------------------------------------------------------------
Confidence 99999998652 22222
Q ss_pred eeecCCCCCCCeEEEEEcCCCCEEEEEeCCCcEEEEECCCCceeeeeeCcccccccCccccEEEEEEcCCCCEEEEEeCc
Q 003579 416 ILRPCPENPTAVKACTISACGNFAVLGTAGGWIERFNLQSGISRGSYLDMSERSNYAHNGEVVGVACDSTNTLMISAGYH 495 (809)
Q Consensus 416 ~~~~~~~~~~~v~~v~~s~~g~~l~~g~~~g~i~i~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~l~s~~~d 495 (809)
.|..+|..+.+-|.|..+++++ ...|++||+.+|....... ..|...|+|+.+..++..|++++.|
T Consensus 194 ------nhg~pVe~vl~lpsgs~iasAg-Gn~vkVWDl~~G~qll~~~-------~~H~KtVTcL~l~s~~~rLlS~sLD 259 (487)
T KOG0310|consen 194 ------NHGCPVESVLALPSGSLIASAG-GNSVKVWDLTTGGQLLTSM-------FNHNKTVTCLRLASDSTRLLSGSLD 259 (487)
T ss_pred ------cCCCceeeEEEcCCCCEEEEcC-CCeEEEEEecCCceehhhh-------hcccceEEEEEeecCCceEeecccc
Confidence 3458899999999999888875 4579999999654443332 2599999999999999999999999
Q ss_pred CeEEEEECCCCceeeeeecCCCeEEEEEeeCCCEEEEEeCCCeEEEEEc
Q 003579 496 GDIKVWDFKGRDLKSRWEVGCSLVKIVYHRVNGLLATVADDLVIRLFDV 544 (809)
Q Consensus 496 g~i~iwd~~~~~~~~~~~~~~~i~~~~~s~~~~~la~~~~d~~I~v~d~ 544 (809)
+.+++||+.+-+.+..+...++|.+++.+|++..+++|..||.+-+-+.
T Consensus 260 ~~VKVfd~t~~Kvv~s~~~~~pvLsiavs~dd~t~viGmsnGlv~~rr~ 308 (487)
T KOG0310|consen 260 RHVKVFDTTNYKVVHSWKYPGPVLSIAVSPDDQTVVIGMSNGLVSIRRR 308 (487)
T ss_pred cceEEEEccceEEEEeeecccceeeEEecCCCceEEEecccceeeeehh
Confidence 9999999999999999999999999999999999999999998877633
No 81
>KOG0305 consensus Anaphase promoting complex, Cdc20, Cdh1, and Ama1 subunits [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=99.96 E-value=3.6e-28 Score=250.75 Aligned_cols=269 Identities=18% Similarity=0.229 Sum_probs=234.5
Q ss_pred CEEEEEeCCCeEEEEeCCCCceEEEEcCCCCCEEEEEEcCCCCEEEEEeCCCeEEEEEeeCCeEEEEEeccCCCcEEEEE
Q 003579 152 NKVIVGSQEGSLQLWNISTKKKLYEFKGWGSSISSCVSSPALDVVAVGCSDGKIHVHNVRYDEELVTFTHSMRGAVTALA 231 (809)
Q Consensus 152 ~~l~~~~~dg~i~lwd~~~~~~~~~~~~~~~~I~~l~~sp~~~~la~g~~dg~i~iwd~~~~~~~~~~~~~~~~~V~~l~ 231 (809)
|.|++|.. ..|++|+..+++.......+...|+++.|+++|.+||+|..+|.|.|||....+.+..+..+|...|.+++
T Consensus 189 n~laValg-~~vylW~~~s~~v~~l~~~~~~~vtSv~ws~~G~~LavG~~~g~v~iwD~~~~k~~~~~~~~h~~rvg~la 267 (484)
T KOG0305|consen 189 NVLAVALG-QSVYLWSASSGSVTELCSFGEELVTSVKWSPDGSHLAVGTSDGTVQIWDVKEQKKTRTLRGSHASRVGSLA 267 (484)
T ss_pred CeEEEEec-ceEEEEecCCCceEEeEecCCCceEEEEECCCCCEEEEeecCCeEEEEehhhccccccccCCcCceeEEEe
Confidence 56777754 56999999999877776666899999999999999999999999999999999999999986799999999
Q ss_pred EecCCCCEEEEEcCCCcEEEEECCCceeeee-eecccccceEEEEEecCCCEEEEEcCCCcEEEEEeeCCCCCceeEEec
Q 003579 232 FSSDGQPLLASGASSGVISIWNLEKRRLQSV-IREAHDNAIISLHFFANEPVLMSASADNSIKMWIFDTTDGDPRLLRFR 310 (809)
Q Consensus 232 fs~dg~~~lasg~~dg~I~iwdl~~~~~~~~-~~~~h~~~V~~l~~~~~~~~l~s~s~d~~i~vw~~~~~~~~~~~~~~~ 310 (809)
|. +. .+.+|+.+|.|..+|++..+.... +. +|...|..+.|++|+.+|++|+.|+.+.|||.... .....+
T Consensus 268 W~--~~-~lssGsr~~~I~~~dvR~~~~~~~~~~-~H~qeVCgLkws~d~~~lASGgnDN~~~Iwd~~~~----~p~~~~ 339 (484)
T KOG0305|consen 268 WN--SS-VLSSGSRDGKILNHDVRISQHVVSTLQ-GHRQEVCGLKWSPDGNQLASGGNDNVVFIWDGLSP----EPKFTF 339 (484)
T ss_pred cc--Cc-eEEEecCCCcEEEEEEecchhhhhhhh-cccceeeeeEECCCCCeeccCCCccceEeccCCCc----cccEEE
Confidence 98 33 799999999999999998866555 55 89999999999999999999999999999987433 566677
Q ss_pred cCCCCCCeeEEEec-CCCEEEEEE--CCCCEEEEEeeecccceecchhhHHHHHhhccchhhhhccCceeEEeecccccc
Q 003579 311 SGHSAPPLCIRFYA-NGRHILSAG--QDRAFRLFSVIQDQQSRELSQRHVAKRARKLKMKEEELKLKPVIAFDCAEIRER 387 (809)
Q Consensus 311 ~~h~~~v~~i~~~~-~~~~l~s~~--~dg~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~ 387 (809)
..|.+.|..++|+| ....|++|+ .|+.|++|++.++.....+.
T Consensus 340 ~~H~aAVKA~awcP~q~~lLAsGGGs~D~~i~fwn~~~g~~i~~vd---------------------------------- 385 (484)
T KOG0305|consen 340 TEHTAAVKALAWCPWQSGLLATGGGSADRCIKFWNTNTGARIDSVD---------------------------------- 385 (484)
T ss_pred eccceeeeEeeeCCCccCceEEcCCCcccEEEEEEcCCCcEecccc----------------------------------
Confidence 89999999999999 667888875 69999999998776554432
Q ss_pred ccceeEEeecCCceEEEEEeeeeeecceeeecCCCCCCCeEEEEEcCCCCEEEE--EeCCCcEEEEECCCCceeeeeeCc
Q 003579 388 DWCNVVTCHMDTAQAYVWRLQNFVLGEHILRPCPENPTAVKACTISACGNFAVL--GTAGGWIERFNLQSGISRGSYLDM 465 (809)
Q Consensus 388 ~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~v~~v~~s~~g~~l~~--g~~~g~i~i~~~~~~~~~~~~~~~ 465 (809)
....|.++.|++..+-+++ |+.++.|.+|+..+......+.
T Consensus 386 -----------------------------------tgsQVcsL~Wsk~~kEi~sthG~s~n~i~lw~~ps~~~~~~l~-- 428 (484)
T KOG0305|consen 386 -----------------------------------TGSQVCSLIWSKKYKELLSTHGYSENQITLWKYPSMKLVAELL-- 428 (484)
T ss_pred -----------------------------------cCCceeeEEEcCCCCEEEEecCCCCCcEEEEeccccceeeeec--
Confidence 2278999999999877665 6778899999999988877775
Q ss_pred ccccccCccccEEEEEEcCCCCEEEEEeCcCeEEEEECCCC
Q 003579 466 SERSNYAHNGEVVGVACDSTNTLMISAGYHGDIKVWDFKGR 506 (809)
Q Consensus 466 ~~~~~~~h~~~v~~l~~~~~~~~l~s~~~dg~i~iwd~~~~ 506 (809)
+|...|..++++|+|..+++|+.|.++++|++-..
T Consensus 429 ------gH~~RVl~la~SPdg~~i~t~a~DETlrfw~~f~~ 463 (484)
T KOG0305|consen 429 ------GHTSRVLYLALSPDGETIVTGAADETLRFWNLFDE 463 (484)
T ss_pred ------CCcceeEEEEECCCCCEEEEecccCcEEeccccCC
Confidence 99999999999999999999999999999997654
No 82
>KOG0283 consensus WD40 repeat-containing protein [Function unknown]
Probab=99.96 E-value=4.4e-28 Score=256.10 Aligned_cols=298 Identities=16% Similarity=0.246 Sum_probs=219.7
Q ss_pred CceEEEEc-CCCCCEEEEEEcCCCCEEEEEeCCCeEEEEEeeCCeEEEEEeccC----------CCcEEEEEEec---CC
Q 003579 171 KKKLYEFK-GWGSSISSCVSSPALDVVAVGCSDGKIHVHNVRYDEELVTFTHSM----------RGAVTALAFSS---DG 236 (809)
Q Consensus 171 ~~~~~~~~-~~~~~I~~l~~sp~~~~la~g~~dg~i~iwd~~~~~~~~~~~~~~----------~~~V~~l~fs~---dg 236 (809)
....+.+. .|.+.|.++.||+||+|||+|+.||.|+||.+...+. ....... .+.+..+.-++ .+
T Consensus 256 l~~~Qe~~~ah~gaIw~mKFS~DGKyLAsaGeD~virVWkVie~e~-~~~~~~~~~~~~~~~~~~s~~~p~~s~~~~~~~ 334 (712)
T KOG0283|consen 256 LTVVQEISNAHKGAIWAMKFSHDGKYLASAGEDGVIRVWKVIESER-MRVAEGDSSCMYFEYNANSQIEPSTSSEEKISS 334 (712)
T ss_pred eEEeeccccccCCcEEEEEeCCCCceeeecCCCceEEEEEEeccch-hcccccccchhhhhhhhccccCccccccccccc
Confidence 33445566 8999999999999999999999999999999976443 1111110 01111111111 01
Q ss_pred C-CEEEEEcCCCcEEEEECCC----ceeeeeeecccccceEEEEEecCCCEEEEEcCCCcEEEEEeeCCCCCceeEEecc
Q 003579 237 Q-PLLASGASSGVISIWNLEK----RRLQSVIREAHDNAIISLHFFANEPVLMSASADNSIKMWIFDTTDGDPRLLRFRS 311 (809)
Q Consensus 237 ~-~~lasg~~dg~I~iwdl~~----~~~~~~~~~~h~~~V~~l~~~~~~~~l~s~s~d~~i~vw~~~~~~~~~~~~~~~~ 311 (809)
+ ...-.+..... .+.+... .+++..+. +|.+.|..+.|+.++ +|++++.|.+||+|++... .++..+
T Consensus 335 ~~s~~~~~~~s~~-~~~p~~~f~f~ekP~~ef~-GHt~DILDlSWSKn~-fLLSSSMDKTVRLWh~~~~----~CL~~F- 406 (712)
T KOG0283|consen 335 RTSSSRKGSQSPC-VLLPLKAFVFSEKPFCEFK-GHTADILDLSWSKNN-FLLSSSMDKTVRLWHPGRK----ECLKVF- 406 (712)
T ss_pred cccccccccCCcc-ccCCCccccccccchhhhh-ccchhheecccccCC-eeEeccccccEEeecCCCc----ceeeEE-
Confidence 1 01122222233 2233222 35667777 999999999999876 8999999999999988766 567666
Q ss_pred CCCCCCeeEEEec-CCCEEEEEECCCCEEEEEeeecccceecchhhHHHHHhhccchhhhhccCceeEEeeccccccccc
Q 003579 312 GHSAPPLCIRFYA-NGRHILSAGQDRAFRLFSVIQDQQSRELSQRHVAKRARKLKMKEEELKLKPVIAFDCAEIRERDWC 390 (809)
Q Consensus 312 ~h~~~v~~i~~~~-~~~~l~s~~~dg~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~ 390 (809)
.|..-|+|++|+| |.+++++|+-||.+|+|++...+.
T Consensus 407 ~HndfVTcVaFnPvDDryFiSGSLD~KvRiWsI~d~~V------------------------------------------ 444 (712)
T KOG0283|consen 407 SHNDFVTCVAFNPVDDRYFISGSLDGKVRLWSISDKKV------------------------------------------ 444 (712)
T ss_pred ecCCeeEEEEecccCCCcEeecccccceEEeecCcCee------------------------------------------
Confidence 7999999999999 899999999999999999854432
Q ss_pred eeEEeecCCceEEEEEeeeeeecceeeecCCCCCCCeEEEEEcCCCCEEEEEeCCCcEEEEECCCCceeeeeeCcccccc
Q 003579 391 NVVTCHMDTAQAYVWRLQNFVLGEHILRPCPENPTAVKACTISACGNFAVLGTAGGWIERFNLQSGISRGSYLDMSERSN 470 (809)
Q Consensus 391 ~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~v~~v~~s~~g~~l~~g~~~g~i~i~~~~~~~~~~~~~~~~~~~~ 470 (809)
..|. .-..-|++++++|+|++.++|+-+|.+++|+....+......-......
T Consensus 445 ------------v~W~---------------Dl~~lITAvcy~PdGk~avIGt~~G~C~fY~t~~lk~~~~~~I~~~~~K 497 (712)
T KOG0283|consen 445 ------------VDWN---------------DLRDLITAVCYSPDGKGAVIGTFNGYCRFYDTEGLKLVSDFHIRLHNKK 497 (712)
T ss_pred ------------Eeeh---------------hhhhhheeEEeccCCceEEEEEeccEEEEEEccCCeEEEeeeEeeccCc
Confidence 1121 1127899999999999999999999999999988777665542221111
Q ss_pred -cCccccEEEEEEcCCC-CEEEEEeCcCeEEEEECCCCceeeeeecC---CCeEEEEEeeCCCEEEEEeCCCeEEEEEcC
Q 003579 471 -YAHNGEVVGVACDSTN-TLMISAGYHGDIKVWDFKGRDLKSRWEVG---CSLVKIVYHRVNGLLATVADDLVIRLFDVV 545 (809)
Q Consensus 471 -~~h~~~v~~l~~~~~~-~~l~s~~~dg~i~iwd~~~~~~~~~~~~~---~~i~~~~~s~~~~~la~~~~d~~I~v~d~~ 545 (809)
..|. .|+++.+.|.. ..+++.+.|..|||+|..+..++..+... ..-....|+.||++|+++++|..|++|++.
T Consensus 498 k~~~~-rITG~Q~~p~~~~~vLVTSnDSrIRI~d~~~~~lv~KfKG~~n~~SQ~~Asfs~Dgk~IVs~seDs~VYiW~~~ 576 (712)
T KOG0283|consen 498 KKQGK-RITGLQFFPGDPDEVLVTSNDSRIRIYDGRDKDLVHKFKGFRNTSSQISASFSSDGKHIVSASEDSWVYIWKND 576 (712)
T ss_pred cccCc-eeeeeEecCCCCCeEEEecCCCceEEEeccchhhhhhhcccccCCcceeeeEccCCCEEEEeecCceEEEEeCC
Confidence 1233 89999999754 45788889999999999988888888754 445677899999999999999999999986
Q ss_pred CC
Q 003579 546 AL 547 (809)
Q Consensus 546 ~~ 547 (809)
..
T Consensus 577 ~~ 578 (712)
T KOG0283|consen 577 SF 578 (712)
T ss_pred CC
Confidence 54
No 83
>KOG0274 consensus Cdc4 and related F-box and WD-40 proteins [General function prediction only]
Probab=99.96 E-value=2.6e-27 Score=254.84 Aligned_cols=281 Identities=22% Similarity=0.378 Sum_probs=243.5
Q ss_pred CCCCEEEEEEcCCCCEEEEEeCCCeEEEEEeeCCeEEEE-EeccCCCcEEEEEEecCCCCEEEEEcCCCcEEEEECCCce
Q 003579 180 WGSSISSCVSSPALDVVAVGCSDGKIHVHNVRYDEELVT-FTHSMRGAVTALAFSSDGQPLLASGASSGVISIWNLEKRR 258 (809)
Q Consensus 180 ~~~~I~~l~~sp~~~~la~g~~dg~i~iwd~~~~~~~~~-~~~~~~~~V~~l~fs~dg~~~lasg~~dg~I~iwdl~~~~ 258 (809)
+...+.+..|. ..++++++.+++|++|+..++..+.. +.+| .+.|.+++|...+. +|++|+.|.++++||..+|+
T Consensus 207 ~~~~~~~~q~~--~~~~~~~s~~~tl~~~~~~~~~~i~~~l~GH-~g~V~~l~~~~~~~-~lvsgS~D~t~rvWd~~sg~ 282 (537)
T KOG0274|consen 207 DDHVVLCLQLH--DGFFKSGSDDSTLHLWDLNNGYLILTRLVGH-FGGVWGLAFPSGGD-KLVSGSTDKTERVWDCSTGE 282 (537)
T ss_pred Ccchhhhheee--cCeEEecCCCceeEEeecccceEEEeeccCC-CCCceeEEEecCCC-EEEEEecCCcEEeEecCCCc
Confidence 56778888888 56899999999999999999999988 6655 89999999987444 99999999999999999999
Q ss_pred eeeeeecccccceEEEEEecCCCEEEEEcCCCcEEEEEeeCCCCCceeEEeccCCCCCCeeEEEecCCCEEEEEECCCCE
Q 003579 259 LQSVIREAHDNAIISLHFFANEPVLMSASADNSIKMWIFDTTDGDPRLLRFRSGHSAPPLCIRFYANGRHILSAGQDRAF 338 (809)
Q Consensus 259 ~~~~~~~~h~~~V~~l~~~~~~~~l~s~s~d~~i~vw~~~~~~~~~~~~~~~~~h~~~v~~i~~~~~~~~l~s~~~dg~i 338 (809)
+...+. +|.+.|.++... ...+++|+.|.+|++|+++.+ ..+..+.+|.++|.++..+ +.++++|+.|++|
T Consensus 283 C~~~l~-gh~stv~~~~~~--~~~~~sgs~D~tVkVW~v~n~----~~l~l~~~h~~~V~~v~~~--~~~lvsgs~d~~v 353 (537)
T KOG0274|consen 283 CTHSLQ-GHTSSVRCLTID--PFLLVSGSRDNTVKVWDVTNG----ACLNLLRGHTGPVNCVQLD--EPLLVSGSYDGTV 353 (537)
T ss_pred EEEEec-CCCceEEEEEcc--CceEeeccCCceEEEEeccCc----ceEEEeccccccEEEEEec--CCEEEEEecCceE
Confidence 999999 999999999865 447888999999999999855 6788888899999999997 7799999999999
Q ss_pred EEEEeeecccceecchhhHHHHHhhccchhhhhccCceeEEeeccccccccceeEEeecCCceEEEEEeeeeeecceeee
Q 003579 339 RLFSVIQDQQSRELSQRHVAKRARKLKMKEEELKLKPVIAFDCAEIRERDWCNVVTCHMDTAQAYVWRLQNFVLGEHILR 418 (809)
Q Consensus 339 ~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~ 418 (809)
++|++.+.+....
T Consensus 354 ~VW~~~~~~cl~s------------------------------------------------------------------- 366 (537)
T KOG0274|consen 354 KVWDPRTGKCLKS------------------------------------------------------------------- 366 (537)
T ss_pred EEEEhhhceeeee-------------------------------------------------------------------
Confidence 9999764433222
Q ss_pred cCCCCCCCeEEEEEcCCCCEEEEEeCCCcEEEEECCCCceeeeeeCcccccccCccccEEEEEEcCCCCEEEEEeCcCeE
Q 003579 419 PCPENPTAVKACTISACGNFAVLGTAGGWIERFNLQSGISRGSYLDMSERSNYAHNGEVVGVACDSTNTLMISAGYHGDI 498 (809)
Q Consensus 419 ~~~~~~~~v~~v~~s~~g~~l~~g~~~g~i~i~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~l~s~~~dg~i 498 (809)
+ .+|...|.++.+++. ..+++|+.|++|
T Consensus 367 -------------------------------------------l--------~gH~~~V~sl~~~~~-~~~~Sgs~D~~I 394 (537)
T KOG0274|consen 367 -------------------------------------------L--------SGHTGRVYSLIVDSE-NRLLSGSLDTTI 394 (537)
T ss_pred -------------------------------------------e--------cCCcceEEEEEecCc-ceEEeeeeccce
Confidence 2 389999999988766 889999999999
Q ss_pred EEEECCCC-ceeeeeecCCCeEEEEEeeCCCEEEEEeCCCeEEEEEcCCCeEEEEEec-CCCCeeeEEECCCCCEEEEEe
Q 003579 499 KVWDFKGR-DLKSRWEVGCSLVKIVYHRVNGLLATVADDLVIRLFDVVALRMVRKFEG-HTDRITDFCFSEDGKWLLSSG 576 (809)
Q Consensus 499 ~iwd~~~~-~~~~~~~~~~~i~~~~~s~~~~~la~~~~d~~I~v~d~~~~~~~~~~~~-h~~~I~~l~fspdg~~l~s~s 576 (809)
++||+.+. +++.++..+..+. ......+++|.+++.|+.|++||.+++++++++.+ |.+.|+.+++. ...+++++
T Consensus 395 kvWdl~~~~~c~~tl~~h~~~v-~~l~~~~~~Lvs~~aD~~Ik~WD~~~~~~~~~~~~~~~~~v~~l~~~--~~~il~s~ 471 (537)
T KOG0274|consen 395 KVWDLRTKRKCIHTLQGHTSLV-SSLLLRDNFLVSSSADGTIKLWDAEEGECLRTLEGRHVGGVSALALG--KEEILCSS 471 (537)
T ss_pred EeecCCchhhhhhhhcCCcccc-cccccccceeEeccccccEEEeecccCceeeeeccCCcccEEEeecC--cceEEEEe
Confidence 99999999 8999998885544 33444588999999999999999999999999999 77999999887 45788899
Q ss_pred CCCeEEEEEcCCccEEEEe
Q 003579 577 MDGSLRIWDVILARQIDAI 595 (809)
Q Consensus 577 ~D~~I~vwd~~~~~~i~~~ 595 (809)
.|+++++||+++++++..+
T Consensus 472 ~~~~~~l~dl~~~~~~~~l 490 (537)
T KOG0274|consen 472 DDGSVKLWDLRSGTLIRTL 490 (537)
T ss_pred cCCeeEEEecccCchhhhh
Confidence 9999999999999988766
No 84
>KOG1446 consensus Histone H3 (Lys4) methyltransferase complex and RNA cleavage factor II complex, subunit SWD2 [RNA processing and modification; Chromatin structure and dynamics; Posttranslational modification, protein turnover, chaperones]
Probab=99.96 E-value=3.5e-26 Score=214.93 Aligned_cols=294 Identities=12% Similarity=0.194 Sum_probs=237.4
Q ss_pred CceEEEEcCCCCCEEEEEEcCCCCEEEEEeCCCeEEEEEeeCCeEEEEEeccCCCcEEEEEEecCCCCEEEEEcC--CCc
Q 003579 171 KKKLYEFKGWGSSISSCVSSPALDVVAVGCSDGKIHVHNVRYDEELVTFTHSMRGAVTALAFSSDGQPLLASGAS--SGV 248 (809)
Q Consensus 171 ~~~~~~~~~~~~~I~~l~~sp~~~~la~g~~dg~i~iwd~~~~~~~~~~~~~~~~~V~~l~fs~dg~~~lasg~~--dg~ 248 (809)
-++...|......|.++.|+++|.+|++++.|.+++|||..+++.+.++... +-.+..++|..... .++.++. |.+
T Consensus 4 ~~~ak~f~~~~~~i~sl~fs~~G~~litss~dDsl~LYd~~~g~~~~ti~sk-kyG~~~~~Fth~~~-~~i~sStk~d~t 81 (311)
T KOG1446|consen 4 FRPAKVFRETNGKINSLDFSDDGLLLITSSEDDSLRLYDSLSGKQVKTINSK-KYGVDLACFTHHSN-TVIHSSTKEDDT 81 (311)
T ss_pred cccccccccCCCceeEEEecCCCCEEEEecCCCeEEEEEcCCCceeeEeecc-cccccEEEEecCCc-eEEEccCCCCCc
Confidence 3445556667889999999999999999999999999999999999999876 56788999987776 4555554 889
Q ss_pred EEEEECCCceeeeeeecccccceEEEEEecCCCEEEEEcCCCcEEEEEeeCCCCCceeEEeccCCCCCCeeEEEecCCCE
Q 003579 249 ISIWNLEKRRLQSVIREAHDNAIISLHFFANEPVLMSASADNSIKMWIFDTTDGDPRLLRFRSGHSAPPLCIRFYANGRH 328 (809)
Q Consensus 249 I~iwdl~~~~~~~~~~~~h~~~V~~l~~~~~~~~l~s~s~d~~i~vw~~~~~~~~~~~~~~~~~h~~~v~~i~~~~~~~~ 328 (809)
|+..++.+.+.++.+. ||...|++++.+|-+..+++++.|++|++||++.......+ +...-..++|.|+|-.
T Consensus 82 IryLsl~dNkylRYF~-GH~~~V~sL~~sP~~d~FlS~S~D~tvrLWDlR~~~cqg~l------~~~~~pi~AfDp~GLi 154 (311)
T KOG1446|consen 82 IRYLSLHDNKYLRYFP-GHKKRVNSLSVSPKDDTFLSSSLDKTVRLWDLRVKKCQGLL------NLSGRPIAAFDPEGLI 154 (311)
T ss_pred eEEEEeecCceEEEcC-CCCceEEEEEecCCCCeEEecccCCeEEeeEecCCCCceEE------ecCCCcceeECCCCcE
Confidence 9999999999999999 99999999999999999999999999999999866543222 2233456899999999
Q ss_pred EEEEECCCCEEEEEeeecccceecchhhHHHHHhhccchhhhhccCceeEEeeccccccccceeEEeecCCceEEEEEee
Q 003579 329 ILSAGQDRAFRLFSVIQDQQSRELSQRHVAKRARKLKMKEEELKLKPVIAFDCAEIRERDWCNVVTCHMDTAQAYVWRLQ 408 (809)
Q Consensus 329 l~s~~~dg~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~ 408 (809)
++++.....|++||++.-.. .|...
T Consensus 155 fA~~~~~~~IkLyD~Rs~dk-------------------------gPF~t------------------------------ 179 (311)
T KOG1446|consen 155 FALANGSELIKLYDLRSFDK-------------------------GPFTT------------------------------ 179 (311)
T ss_pred EEEecCCCeEEEEEecccCC-------------------------CCcee------------------------------
Confidence 99988887999999875321 11111
Q ss_pred eeeecceeeecCCCCCCCeEEEEEcCCCCEEEEEeCCCcEEEEECCCCceeeeeeCcccccccCccccEEEEEEcCCCCE
Q 003579 409 NFVLGEHILRPCPENPTAVKACTISACGNFAVLGTAGGWIERFNLQSGISRGSYLDMSERSNYAHNGEVVGVACDSTNTL 488 (809)
Q Consensus 409 ~~~~~~~~~~~~~~~~~~v~~v~~s~~g~~l~~g~~~g~i~i~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~ 488 (809)
+..........+.+.|||||+++++++..+.+++.|.-+|.....+.... ....--.+.+|.|++++
T Consensus 180 --------f~i~~~~~~ew~~l~FS~dGK~iLlsT~~s~~~~lDAf~G~~~~tfs~~~-----~~~~~~~~a~ftPds~F 246 (311)
T KOG1446|consen 180 --------FSITDNDEAEWTDLEFSPDGKSILLSTNASFIYLLDAFDGTVKSTFSGYP-----NAGNLPLSATFTPDSKF 246 (311)
T ss_pred --------EccCCCCccceeeeEEcCCCCEEEEEeCCCcEEEEEccCCcEeeeEeecc-----CCCCcceeEEECCCCcE
Confidence 11111234778899999999999999999999999999999888876311 11111257789999999
Q ss_pred EEEEeCcCeEEEEECCCCceeeeeec--CCCeEEEEEeeCCCEEEEEeCCCeEEEEE
Q 003579 489 MISAGYHGDIKVWDFKGRDLKSRWEV--GCSLVKIVYHRVNGLLATVADDLVIRLFD 543 (809)
Q Consensus 489 l~s~~~dg~i~iwd~~~~~~~~~~~~--~~~i~~~~~s~~~~~la~~~~d~~I~v~d 543 (809)
+++|+.||+|.+|+++++..+..+.. ..++.++.|+|.-.++++++. .+.+|=
T Consensus 247 vl~gs~dg~i~vw~~~tg~~v~~~~~~~~~~~~~~~fnP~~~mf~sa~s--~l~fw~ 301 (311)
T KOG1446|consen 247 VLSGSDDGTIHVWNLETGKKVAVLRGPNGGPVSCVRFNPRYAMFVSASS--NLVFWL 301 (311)
T ss_pred EEEecCCCcEEEEEcCCCcEeeEecCCCCCCccccccCCceeeeeecCc--eEEEEe
Confidence 99999999999999999999999887 388999999998878777754 555553
No 85
>KOG1407 consensus WD40 repeat protein [Function unknown]
Probab=99.96 E-value=4.3e-27 Score=213.99 Aligned_cols=280 Identities=14% Similarity=0.168 Sum_probs=239.1
Q ss_pred EEEcCCCCCEEEEEEcCCCCEEEEEeCCCeEEEEEeeCCeEEEEEe-ccCCCcEEEEEEecCCCCEEEEEcCCCcEEEEE
Q 003579 175 YEFKGWGSSISSCVSSPALDVVAVGCSDGKIHVHNVRYDEELVTFT-HSMRGAVTALAFSSDGQPLLASGASSGVISIWN 253 (809)
Q Consensus 175 ~~~~~~~~~I~~l~~sp~~~~la~g~~dg~i~iwd~~~~~~~~~~~-~~~~~~V~~l~fs~dg~~~lasg~~dg~I~iwd 253 (809)
+.+.+|.+.|.+++|..+|..||+|+.|+++.+|++..++...... .+|.+.|-.++|.|....++++++.|.+|++||
T Consensus 14 r~~~~~~~~v~Sv~wn~~g~~lasgs~dktv~v~n~e~~r~~~~~~~~gh~~svdql~w~~~~~d~~atas~dk~ir~wd 93 (313)
T KOG1407|consen 14 RELQGHVQKVHSVAWNCDGTKLASGSFDKTVSVWNLERDRFRKELVYRGHTDSVDQLCWDPKHPDLFATASGDKTIRIWD 93 (313)
T ss_pred HHhhhhhhcceEEEEcccCceeeecccCCceEEEEecchhhhhhhcccCCCcchhhheeCCCCCcceEEecCCceEEEEE
Confidence 4567899999999999999999999999999999999886555443 344678999999998888999999999999999
Q ss_pred CCCceeeeeeecccccceEEEEEecCCCEEEEEcCCCcEEEEEeeCCCCCceeEEeccCCCCCCeeEEEecCCCEEEEEE
Q 003579 254 LEKRRLQSVIREAHDNAIISLHFFANEPVLMSASADNSIKMWIFDTTDGDPRLLRFRSGHSAPPLCIRFYANGRHILSAG 333 (809)
Q Consensus 254 l~~~~~~~~~~~~h~~~V~~l~~~~~~~~l~s~s~d~~i~vw~~~~~~~~~~~~~~~~~h~~~v~~i~~~~~~~~l~s~~ 333 (809)
.+.+++...+. ..+.=.-+.|+|+|.+++.++.|..|.+.|.... +.... ......+..+.|+.++.+++...
T Consensus 94 ~r~~k~~~~i~--~~~eni~i~wsp~g~~~~~~~kdD~it~id~r~~----~~~~~-~~~~~e~ne~~w~~~nd~Fflt~ 166 (313)
T KOG1407|consen 94 IRSGKCTARIE--TKGENINITWSPDGEYIAVGNKDDRITFIDARTY----KIVNE-EQFKFEVNEISWNNSNDLFFLTN 166 (313)
T ss_pred eccCcEEEEee--ccCcceEEEEcCCCCEEEEecCcccEEEEEeccc----ceeeh-hcccceeeeeeecCCCCEEEEec
Confidence 99999998887 4444556889999999999999999999987654 22222 23445678889988788877777
Q ss_pred CCCCEEEEEeeecccceecchhhHHHHHhhccchhhhhccCceeEEeeccccccccceeEEeecCCceEEEEEeeeeeec
Q 003579 334 QDRAFRLFSVIQDQQSRELSQRHVAKRARKLKMKEEELKLKPVIAFDCAEIRERDWCNVVTCHMDTAQAYVWRLQNFVLG 413 (809)
Q Consensus 334 ~dg~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~ 413 (809)
..|.|.+.+...-+....+
T Consensus 167 GlG~v~ILsypsLkpv~si------------------------------------------------------------- 185 (313)
T KOG1407|consen 167 GLGCVEILSYPSLKPVQSI------------------------------------------------------------- 185 (313)
T ss_pred CCceEEEEecccccccccc-------------------------------------------------------------
Confidence 7899998876543332222
Q ss_pred ceeeecCCCCCCCeEEEEEcCCCCEEEEEeCCCcEEEEECCCCceeeeeeCcccccccCccccEEEEEEcCCCCEEEEEe
Q 003579 414 EHILRPCPENPTAVKACTISACGNFAVLGTAGGWIERFNLQSGISRGSYLDMSERSNYAHNGEVVGVACDSTNTLMISAG 493 (809)
Q Consensus 414 ~~~~~~~~~~~~~v~~v~~s~~g~~l~~g~~~g~i~i~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~l~s~~ 493 (809)
..|+....|+.|+|+|+++++|+.|..+.+||++.-...+.+. .+.-+|..+.|+.+|++|++++
T Consensus 186 -------~AH~snCicI~f~p~GryfA~GsADAlvSLWD~~ELiC~R~is--------RldwpVRTlSFS~dg~~lASaS 250 (313)
T KOG1407|consen 186 -------KAHPSNCICIEFDPDGRYFATGSADALVSLWDVDELICERCIS--------RLDWPVRTLSFSHDGRMLASAS 250 (313)
T ss_pred -------ccCCcceEEEEECCCCceEeeccccceeeccChhHhhhheeec--------cccCceEEEEeccCcceeeccC
Confidence 2466888999999999999999999999999999999888886 7899999999999999999999
Q ss_pred CcCeEEEEECCCCceeeeeecCCCeEEEEEeeCCCEEEEEeCCC
Q 003579 494 YHGDIKVWDFKGRDLKSRWEVGCSLVKIVYHRVNGLLATVADDL 537 (809)
Q Consensus 494 ~dg~i~iwd~~~~~~~~~~~~~~~i~~~~~s~~~~~la~~~~d~ 537 (809)
.|..|-|=++++|..+..++..++...++|||...+||.+++|.
T Consensus 251 EDh~IDIA~vetGd~~~eI~~~~~t~tVAWHPk~~LLAyA~ddk 294 (313)
T KOG1407|consen 251 EDHFIDIAEVETGDRVWEIPCEGPTFTVAWHPKRPLLAYACDDK 294 (313)
T ss_pred ccceEEeEecccCCeEEEeeccCCceeEEecCCCceeeEEecCC
Confidence 99999999999999999999999999999999999999998863
No 86
>KOG0640 consensus mRNA cleavage stimulating factor complex; subunit 1 [RNA processing and modification]
Probab=99.96 E-value=1.2e-27 Score=222.37 Aligned_cols=292 Identities=19% Similarity=0.320 Sum_probs=242.4
Q ss_pred ccccceEEEEEecCCCEEEEEcCCCcEEEEEeeCC--------------CCCceeEEeccCCCCCCeeEEEecCCCEEEE
Q 003579 266 AHDNAIISLHFFANEPVLMSASADNSIKMWIFDTT--------------DGDPRLLRFRSGHSAPPLCIRFYANGRHILS 331 (809)
Q Consensus 266 ~h~~~V~~l~~~~~~~~l~s~s~d~~i~vw~~~~~--------------~~~~~~~~~~~~h~~~v~~i~~~~~~~~l~s 331 (809)
.|.+++.+.+|++||.++++|+.|.+|++.|++.. .....+++++..|..+|+++.|+|....|++
T Consensus 110 ~HK~~cR~aafs~DG~lvATGsaD~SIKildvermlaks~~~em~~~~~qa~hPvIRTlYDH~devn~l~FHPre~ILiS 189 (430)
T KOG0640|consen 110 SHKSPCRAAAFSPDGSLVATGSADASIKILDVERMLAKSKPKEMISGDTQARHPVIRTLYDHVDEVNDLDFHPRETILIS 189 (430)
T ss_pred ecccceeeeeeCCCCcEEEccCCcceEEEeehhhhhhhcchhhhccCCcccCCceEeehhhccCcccceeecchhheEEe
Confidence 79999999999999999999999999999998621 1122467888999999999999999999999
Q ss_pred EECCCCEEEEEeeecccceecchhhHHHHHhhccchhhhhccCceeEEeeccccccccceeEEeecCCceEEEEEeeeee
Q 003579 332 AGQDRAFRLFSVIQDQQSRELSQRHVAKRARKLKMKEEELKLKPVIAFDCAEIRERDWCNVVTCHMDTAQAYVWRLQNFV 411 (809)
Q Consensus 332 ~~~dg~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~ 411 (809)
++.|++|++||+......+.+.. +
T Consensus 190 ~srD~tvKlFDfsK~saKrA~K~---------~----------------------------------------------- 213 (430)
T KOG0640|consen 190 GSRDNTVKLFDFSKTSAKRAFKV---------F----------------------------------------------- 213 (430)
T ss_pred ccCCCeEEEEecccHHHHHHHHH---------h-----------------------------------------------
Confidence 99999999999865432221110 0
Q ss_pred ecceeeecCCCCCCCeEEEEEcCCCCEEEEEeCCCcEEEEECCCCceeeeeeCcccccccCccccEEEEEEcCCCCEEEE
Q 003579 412 LGEHILRPCPENPTAVKACTISACGNFAVLGTAGGWIERFNLQSGISRGSYLDMSERSNYAHNGEVVGVACDSTNTLMIS 491 (809)
Q Consensus 412 ~~~~~~~~~~~~~~~v~~v~~s~~g~~l~~g~~~g~i~i~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~l~s 491 (809)
....++.++.|+|.|.|+++|+....+++||+.+-+....-. ....|.+.|+++.+++.+++.++
T Consensus 214 ----------qd~~~vrsiSfHPsGefllvgTdHp~~rlYdv~T~Qcfvsan-----Pd~qht~ai~~V~Ys~t~~lYvT 278 (430)
T KOG0640|consen 214 ----------QDTEPVRSISFHPSGEFLLVGTDHPTLRLYDVNTYQCFVSAN-----PDDQHTGAITQVRYSSTGSLYVT 278 (430)
T ss_pred ----------hccceeeeEeecCCCceEEEecCCCceeEEeccceeEeeecC-----cccccccceeEEEecCCccEEEE
Confidence 112689999999999999999999999999999877654432 13489999999999999999999
Q ss_pred EeCcCeEEEEECCCCceeeeeec---CCCeEEEEEeeCCCEEEEEeCCCeEEEEEcCCCeEEEEEecCC--C---CeeeE
Q 003579 492 AGYHGDIKVWDFKGRDLKSRWEV---GCSLVKIVYHRVNGLLATVADDLVIRLFDVVALRMVRKFEGHT--D---RITDF 563 (809)
Q Consensus 492 ~~~dg~i~iwd~~~~~~~~~~~~---~~~i~~~~~s~~~~~la~~~~d~~I~v~d~~~~~~~~~~~~h~--~---~I~~l 563 (809)
++.||.|++||--+++++.++.. +..|.+..|..+++++++.+.|..+++|.+.+++++.++.|.. + --+..
T Consensus 279 aSkDG~IklwDGVS~rCv~t~~~AH~gsevcSa~Ftkn~kyiLsSG~DS~vkLWEi~t~R~l~~YtGAg~tgrq~~rtqA 358 (430)
T KOG0640|consen 279 ASKDGAIKLWDGVSNRCVRTIGNAHGGSEVCSAVFTKNGKYILSSGKDSTVKLWEISTGRMLKEYTGAGTTGRQKHRTQA 358 (430)
T ss_pred eccCCcEEeeccccHHHHHHHHhhcCCceeeeEEEccCCeEEeecCCcceeeeeeecCCceEEEEecCCcccchhhhhhh
Confidence 99999999999999999988853 3789999999999999999999999999999999999987641 1 23445
Q ss_pred EECCCCCEEEEEe-CCCeEEEEEcCCccEEEEe--eeCcceEEEEEcCCCCeEEEEEeCCCeEEEeecC
Q 003579 564 CFSEDGKWLLSSG-MDGSLRIWDVILARQIDAI--HVDVSITALSLSPNMDVLATAHVDQNGVYLWVNR 629 (809)
Q Consensus 564 ~fspdg~~l~s~s-~D~~I~vwd~~~~~~i~~~--~~~~~v~~l~~spdg~~lat~~~d~~~i~lW~~~ 629 (809)
.|.....|++.-. ..+.+.-||..++..+..+ .+.+++..+.-||.+.-+.|++.|- .+++|--+
T Consensus 359 vFNhtEdyVl~pDEas~slcsWdaRtadr~~l~slgHn~a~R~i~HSP~~p~FmTcsdD~-raRFWyrr 426 (430)
T KOG0640|consen 359 VFNHTEDYVLFPDEASNSLCSWDARTADRVALLSLGHNGAVRWIVHSPVEPAFMTCSDDF-RARFWYRR 426 (430)
T ss_pred hhcCccceEEccccccCceeeccccchhhhhhcccCCCCCceEEEeCCCCCceeeecccc-eeeeeeec
Confidence 6777777877654 3467999999988765444 4556699999999999999999998 49999754
No 87
>KOG0289 consensus mRNA splicing factor [General function prediction only]
Probab=99.96 E-value=2.7e-27 Score=230.03 Aligned_cols=282 Identities=18% Similarity=0.331 Sum_probs=248.2
Q ss_pred CcEEEEEEecCCCCEEEEEcCCCcEEEEECCCceeeeeeecccccceEEEEEecCCCEEEEEcCCCcEEEEEeeCCCCCc
Q 003579 225 GAVTALAFSSDGQPLLASGASSGVISIWNLEKRRLQSVIREAHDNAIISLHFFANEPVLMSASADNSIKMWIFDTTDGDP 304 (809)
Q Consensus 225 ~~V~~l~fs~dg~~~lasg~~dg~I~iwdl~~~~~~~~~~~~h~~~V~~l~~~~~~~~l~s~s~d~~i~vw~~~~~~~~~ 304 (809)
..++++...+... .+.+|+.|..+.++|...++.+..+. ||...|+.+.|+++...+++++.|..|++|......
T Consensus 220 pgi~ald~~~s~~-~ilTGG~d~~av~~d~~s~q~l~~~~-Gh~kki~~v~~~~~~~~v~~aSad~~i~vws~~~~s--- 294 (506)
T KOG0289|consen 220 PGITALDIIPSSS-KILTGGEDKTAVLFDKPSNQILATLK-GHTKKITSVKFHKDLDTVITASADEIIRVWSVPLSS--- 294 (506)
T ss_pred CCeeEEeecCCCC-cceecCCCCceEEEecchhhhhhhcc-CcceEEEEEEeccchhheeecCCcceEEeecccccc---
Confidence 4688888888744 78999999999999999999999999 999999999999999999999999999999776553
Q ss_pred eeEEeccCCCCCCeeEEEecCCCEEEEEECCCCEEEEEeeecccceecchhhHHHHHhhccchhhhhccCceeEEeeccc
Q 003579 305 RLLRFRSGHSAPPLCIRFYANGRHILSAGQDRAFRLFSVIQDQQSRELSQRHVAKRARKLKMKEEELKLKPVIAFDCAEI 384 (809)
Q Consensus 305 ~~~~~~~~h~~~v~~i~~~~~~~~l~s~~~dg~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~ 384 (809)
.......|..+|+.+..+|.|.||++++.|++..+.|++++.+....+..
T Consensus 295 -~~~~~~~h~~~V~~ls~h~tgeYllsAs~d~~w~Fsd~~~g~~lt~vs~~----------------------------- 344 (506)
T KOG0289|consen 295 -EPTSSRPHEEPVTGLSLHPTGEYLLSASNDGTWAFSDISSGSQLTVVSDE----------------------------- 344 (506)
T ss_pred -CccccccccccceeeeeccCCcEEEEecCCceEEEEEccCCcEEEEEeec-----------------------------
Confidence 33445689999999999999999999999999999888777554432210
Q ss_pred cccccceeEEeecCCceEEEEEeeeeeecceeeecCCCCCCCeEEEEEcCCCCEEEEEeCCCcEEEEECCCCceeeeeeC
Q 003579 385 RERDWCNVVTCHMDTAQAYVWRLQNFVLGEHILRPCPENPTAVKACTISACGNFAVLGTAGGWIERFNLQSGISRGSYLD 464 (809)
Q Consensus 385 ~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~v~~v~~s~~g~~l~~g~~~g~i~i~~~~~~~~~~~~~~ 464 (809)
...-.+++.+|+|||..+.+|+.||.+++||+.++.....|+
T Consensus 345 -------------------------------------~s~v~~ts~~fHpDgLifgtgt~d~~vkiwdlks~~~~a~Fp- 386 (506)
T KOG0289|consen 345 -------------------------------------TSDVEYTSAAFHPDGLIFGTGTPDGVVKIWDLKSQTNVAKFP- 386 (506)
T ss_pred -------------------------------------cccceeEEeeEcCCceEEeccCCCceEEEEEcCCccccccCC-
Confidence 122568999999999999999999999999999999888886
Q ss_pred cccccccCccccEEEEEEcCCCCEEEEEeCcCeEEEEECCCCceeeeeecC--CCeEEEEEeeCCCEEEEEeCCCeEEEE
Q 003579 465 MSERSNYAHNGEVVGVACDSTNTLMISAGYHGDIKVWDFKGRDLKSRWEVG--CSLVKIVYHRVNGLLATVADDLVIRLF 542 (809)
Q Consensus 465 ~~~~~~~~h~~~v~~l~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~--~~i~~~~~s~~~~~la~~~~d~~I~v~ 542 (809)
+|.++|..++|+.+|-+|++++.|+.|++||++..+...++... .++.++.|.+.|.+|+.++.|-.|+++
T Consensus 387 -------ght~~vk~i~FsENGY~Lat~add~~V~lwDLRKl~n~kt~~l~~~~~v~s~~fD~SGt~L~~~g~~l~Vy~~ 459 (506)
T KOG0289|consen 387 -------GHTGPVKAISFSENGYWLATAADDGSVKLWDLRKLKNFKTIQLDEKKEVNSLSFDQSGTYLGIAGSDLQVYIC 459 (506)
T ss_pred -------CCCCceeEEEeccCceEEEEEecCCeEEEEEehhhcccceeeccccccceeEEEcCCCCeEEeecceeEEEEE
Confidence 89999999999999999999999999999999999988888776 469999999999999999888777777
Q ss_pred Ec--CCCeEEEEEecCCCCeeeEEECCCCCEEEEEeCCCeEEEEEc
Q 003579 543 DV--VALRMVRKFEGHTDRITDFCFSEDGKWLLSSGMDGSLRIWDV 586 (809)
Q Consensus 543 d~--~~~~~~~~~~~h~~~I~~l~fspdg~~l~s~s~D~~I~vwd~ 586 (809)
+- .++..+..+..|.+..+.+.|..+.++++++|+|..++++.+
T Consensus 460 ~k~~k~W~~~~~~~~~sg~st~v~Fg~~aq~l~s~smd~~l~~~a~ 505 (506)
T KOG0289|consen 460 KKKTKSWTEIKELADHSGLSTGVRFGEHAQYLASTSMDAILRLYAL 505 (506)
T ss_pred ecccccceeeehhhhcccccceeeecccceEEeeccchhheEEeec
Confidence 73 356788889999999999999999999999999999998865
No 88
>KOG1445 consensus Tumor-specific antigen (contains WD repeats) [Cytoskeleton]
Probab=99.96 E-value=1.4e-26 Score=234.36 Aligned_cols=538 Identities=15% Similarity=0.215 Sum_probs=309.9
Q ss_pred eeEEEEccccccEEEEEE---eCCEEEEEeCCCcEEEEEcCCCccccceeeeEEc-CC-ccccEEEEeCCCCCCEEEEEe
Q 003579 84 HQVATWSRHSAKVNLLLL---FGEHILSIDIDGNMFIWAFKGIEENLAPVGHVKL-DD-KFTPTCIMHPDTYLNKVIVGS 158 (809)
Q Consensus 84 ~~~~~~~~h~~~V~~l~~---~g~~l~s~~~dg~i~vWd~~~~~~~~~~~~~~~~-~~-~~~~~~~~~p~~~~~~l~~~~ 158 (809)
+.+..+.+|...|+.+.| ....|++|+.|..|+||.+..+-........+.+ +. ..+-++-|||.. .-|+..+
T Consensus 70 r~i~~l~~H~d~VtDl~FspF~D~LLAT~S~D~~VKiW~lp~g~~q~LSape~~~g~~~~~vE~l~fHpTa--Dgil~s~ 147 (1012)
T KOG1445|consen 70 RDIGILAAHGDQVTDLGFSPFADELLATCSRDEPVKIWKLPRGHSQKLSAPEIDVGGGNVIVECLRFHPTA--DGILASG 147 (1012)
T ss_pred cccceeecccceeeccCccccchhhhhcccCCCeeEEEecCCCcccccCCcceeecCCceEEEEeecccCc--CceEEec
Confidence 345668999999999986 5778999999999999999854332111111222 22 233344599987 3455555
Q ss_pred CCCeEEEEeCCCCceEEEEcCCCCCEEEEEEcCCCCEEEEEeCCCeEEEEEeeC-CeEEEEEeccCCCcEEEEEEecCCC
Q 003579 159 QEGSLQLWNISTKKKLYEFKGWGSSISSCVSSPALDVVAVGCSDGKIHVHNVRY-DEELVTFTHSMRGAVTALAFSSDGQ 237 (809)
Q Consensus 159 ~dg~i~lwd~~~~~~~~~~~~~~~~I~~l~~sp~~~~la~g~~dg~i~iwd~~~-~~~~~~~~~~~~~~V~~l~fs~dg~ 237 (809)
..|++++||+.+++.+..+.+|...|.++.|+.||.+|++.+.|..|+|||.+. ++.++....|..-.=..+.|..+-.
T Consensus 148 a~g~v~i~D~stqk~~~el~~h~d~vQSa~WseDG~llatscKdkqirifDPRa~~~piQ~te~H~~~rdsRv~w~Gn~~ 227 (1012)
T KOG1445|consen 148 AHGSVYITDISTQKTAVELSGHTDKVQSADWSEDGKLLATSCKDKQIRIFDPRASMEPIQTTEGHGGMRDSRVLWAGNWE 227 (1012)
T ss_pred cCceEEEEEcccCceeecccCCchhhhccccccCCceEeeecCCcceEEeCCccCCCccccccccccchhheeeeccchh
Confidence 779999999999999999999999999999999999999999999999999985 4566666555333445677776655
Q ss_pred CEEEEEcC---CCcEEEEECCCc-eeeeeeecccccceEEEEEecCCCEEEEEc-CCCcEEEEEeeCCCCC---------
Q 003579 238 PLLASGAS---SGVISIWNLEKR-RLQSVIREAHDNAIISLHFFANEPVLMSAS-ADNSIKMWIFDTTDGD--------- 303 (809)
Q Consensus 238 ~~lasg~~---dg~I~iwdl~~~-~~~~~~~~~h~~~V~~l~~~~~~~~l~s~s-~d~~i~vw~~~~~~~~--------- 303 (809)
.++-+|-. -..|++||.+.- ..++++......+|.---|.||.++|+-+| .++.+..+.+.....-
T Consensus 228 rlisTGF~~~R~reV~~~Dtr~f~~p~~tleld~stGvLiPl~DpDt~llfLaGKG~~~l~~lE~~d~qPyLs~v~~~tl 307 (1012)
T KOG1445|consen 228 RLISTGFTTKRIREVRAYDTRKFGAPVHTLELDSSTGVLIPLYDPDTRLLFLAGKGTNKLFMLEMQDRQPYLSHVFELTL 307 (1012)
T ss_pred hhhhcccchhhheeeeeeeccccCCcceeEEeecccceEeeeecCCCceEEEecCCcceEEEEEecCCCcchhhhhhhcc
Confidence 45555542 357899998764 445555534455666667888888666555 3666666644322000
Q ss_pred ----------------------ceeEE----------------------------------------eccCCCCCCeeEE
Q 003579 304 ----------------------PRLLR----------------------------------------FRSGHSAPPLCIR 321 (809)
Q Consensus 304 ----------------------~~~~~----------------------------------------~~~~h~~~v~~i~ 321 (809)
.+.++ .+.|....|..+.
T Consensus 308 e~~~~GA~lvpkral~VM~~EV~rvlQLt~~~ivPi~y~VPRksyrdFH~DLfPeT~G~~p~~~ageWlnG~Nq~vqKvS 387 (1012)
T KOG1445|consen 308 EEQTLGATLVPKRALHVMDGEVDRVLQLTKSSIVPIPYIVPRKSYRDFHSDLFPETRGAEPGCTAGEWLNGTNQVVQKVS 387 (1012)
T ss_pred hhhhccceecchhhhhhcchhhhhheecccCceeecccccchhhhhhhhhhhCccccCCccCcCccceecCccccccccc
Confidence 00000 0000000111111
Q ss_pred Ee------------------------------------------------cC--CCEEEEEECCCCEEEEEeeecccce-
Q 003579 322 FY------------------------------------------------AN--GRHILSAGQDRAFRLFSVIQDQQSR- 350 (809)
Q Consensus 322 ~~------------------------------------------------~~--~~~l~s~~~dg~i~~wd~~~~~~~~- 350 (809)
.. || .+--+. ....++-.+.+..+...
T Consensus 388 l~Pa~r~h~~~pp~~~P~p~~a~t~sf~~v~~ppaaP~~~~n~~~~~~~~Pd~~~qpaV~--~~~e~r~l~~~~~E~~~g 465 (1012)
T KOG1445|consen 388 LAPAQRSHSPPPPEPVPTPKVAQTPSFVPVPTPPAAPRPMSNNNSSSNNVPDVQEQPAVP--KKEEVRELDYRPYEKENG 465 (1012)
T ss_pred cCchhccCCCCCCCCCCCcccccCCCCccccCCCCCCCccccccccccCCCccccCCCcC--cchhhhhhcccccccccC
Confidence 10 00 000000 00111212111110000
Q ss_pred --------ecchhhHH--------H----HHhhccchhhh---hccCceeEEeecccccccc-------ceeEEeecCC-
Q 003579 351 --------ELSQRHVA--------K----RARKLKMKEEE---LKLKPVIAFDCAEIRERDW-------CNVVTCHMDT- 399 (809)
Q Consensus 351 --------~~~~~~~~--------~----~~~~~~~~~~~---~~~~~i~~~~~~~~~~~~~-------~~~~~~~~~~- 399 (809)
...++... . +.......... ..+.|...-...+.+.... +.+.....-.
T Consensus 466 ~~~~~~dad~~~g~sS~~s~~~~~~~~~~kP~S~plt~~~s~~s~~~P~~~ksvPe~~~~~~g~~~sat~~v~~s~s~r~ 545 (1012)
T KOG1445|consen 466 VHTPNADADSTQGNSSPISTISPEPVTIVKPASTPLTDSVSTPSVVGPAFGKSVPEQPPVNFGKPISATNRVPLSQSVRP 545 (1012)
T ss_pred ccCCCcccccccCCCCCccccCCCcccccCCCCcccccccccccccCccccccCCCCCCcccCCCccccccccccccccc
Confidence 00000000 0 00000000000 0000000000000000000 0000000000
Q ss_pred -----ceEEEEEeeeeeeccee-----ee-cCCCCCCCeEEEEEcCCCCEEEE--EeCCCcEEEEECCCCcee-eeeeCc
Q 003579 400 -----AQAYVWRLQNFVLGEHI-----LR-PCPENPTAVKACTISACGNFAVL--GTAGGWIERFNLQSGISR-GSYLDM 465 (809)
Q Consensus 400 -----~~~~~w~~~~~~~~~~~-----~~-~~~~~~~~v~~v~~s~~g~~l~~--g~~~g~i~i~~~~~~~~~-~~~~~~ 465 (809)
+.+.-|.--.+..+... ++ .....++... -|..+..++++ .+..|.|.+|++...-.+ .....
T Consensus 546 ~s~v~G~iSKFRH~~Gt~ghks~hi~NLrnln~~~PgEsn--Gfcan~~rvAVPL~g~gG~iai~el~~PGrLPDgv~p- 622 (1012)
T KOG1445|consen 546 KSCVVGQISKFRHVDGTQGHKSAHISNLRNLNTRLPGESN--GFCANNKRVAVPLAGSGGVIAIYELNEPGRLPDGVMP- 622 (1012)
T ss_pred cceeeccchheeeccCccccchhhhhhhhcccccCCCccC--ceeeccceEEEEecCCCceEEEEEcCCCCCCCccccc-
Confidence 00000000000000000 00 0000011111 23333455554 456799999998653222 11110
Q ss_pred ccccccCccccEEEEEEcC-CCCEEEEEeCcCeEEEEECCCCc-------eeeeeecC-CCeEEEEEee-CCCEEEEEeC
Q 003579 466 SERSNYAHNGEVVGVACDS-TNTLMISAGYHGDIKVWDFKGRD-------LKSRWEVG-CSLVKIVYHR-VNGLLATVAD 535 (809)
Q Consensus 466 ~~~~~~~h~~~v~~l~~~~-~~~~l~s~~~dg~i~iwd~~~~~-------~~~~~~~~-~~i~~~~~s~-~~~~la~~~~ 535 (809)
..-....|+.++|+| |...|+.++.||.|++|.+..+. +...+..+ ..|+++.||| ..+.|++++.
T Consensus 623 ----~l~Ngt~vtDl~WdPFD~~rLAVa~ddg~i~lWr~~a~gl~e~~~tPe~~lt~h~eKI~slRfHPLAadvLa~asy 698 (1012)
T KOG1445|consen 623 ----GLFNGTLVTDLHWDPFDDERLAVATDDGQINLWRLTANGLPENEMTPEKILTIHGEKITSLRFHPLAADVLAVASY 698 (1012)
T ss_pred ----ccccCceeeecccCCCChHHeeecccCceEEEEEeccCCCCcccCCcceeeecccceEEEEEecchhhhHhhhhhc
Confidence 012456799999999 56889999999999999987653 23334434 7899999999 5678999999
Q ss_pred CCeEEEEEcCCCeEEEEEecCCCCeeeEEECCCCCEEEEEeCCCeEEEEEcCCccE-EEEeee--CcceEEEEEcCCCCe
Q 003579 536 DLVIRLFDVVALRMVRKFEGHTDRITDFCFSEDGKWLLSSGMDGSLRIWDVILARQ-IDAIHV--DVSITALSLSPNMDV 612 (809)
Q Consensus 536 d~~I~v~d~~~~~~~~~~~~h~~~I~~l~fspdg~~l~s~s~D~~I~vwd~~~~~~-i~~~~~--~~~v~~l~~spdg~~ 612 (809)
|.+|++||+.+++....|.||++.|.+++|||||+.+++.+.||+|+||+-.+++. +..-.+ ...--.+.|.-||++
T Consensus 699 d~Ti~lWDl~~~~~~~~l~gHtdqIf~~AWSpdGr~~AtVcKDg~~rVy~Prs~e~pv~Eg~gpvgtRgARi~wacdgr~ 778 (1012)
T KOG1445|consen 699 DSTIELWDLANAKLYSRLVGHTDQIFGIAWSPDGRRIATVCKDGTLRVYEPRSREQPVYEGKGPVGTRGARILWACDGRI 778 (1012)
T ss_pred cceeeeeehhhhhhhheeccCcCceeEEEECCCCcceeeeecCceEEEeCCCCCCCccccCCCCccCcceeEEEEecCcE
Confidence 99999999999999999999999999999999999999999999999999877643 222221 123557888889999
Q ss_pred EEEEEeCC---CeEEEeecCccc
Q 003579 613 LATAHVDQ---NGVYLWVNRCMF 632 (809)
Q Consensus 613 lat~~~d~---~~i~lW~~~~~~ 632 (809)
++..+-|. +.|.+|+.+.+-
T Consensus 779 viv~Gfdk~SeRQv~~Y~Aq~l~ 801 (1012)
T KOG1445|consen 779 VIVVGFDKSSERQVQMYDAQTLD 801 (1012)
T ss_pred EEEecccccchhhhhhhhhhhcc
Confidence 99988775 247788765443
No 89
>KOG0973 consensus Histone transcription regulator HIRA, WD repeat superfamily [Cell cycle control, cell division, chromosome partitioning; Transcription]
Probab=99.96 E-value=2.4e-27 Score=256.83 Aligned_cols=303 Identities=18% Similarity=0.247 Sum_probs=246.2
Q ss_pred cccceEEEEEecCCCEEEEEc--CCCcEEEEEeeCCC--------CCceeEEeccCCCCCCeeEEEecCCCEEEEEECCC
Q 003579 267 HDNAIISLHFFANEPVLMSAS--ADNSIKMWIFDTTD--------GDPRLLRFRSGHSAPPLCIRFYANGRHILSAGQDR 336 (809)
Q Consensus 267 h~~~V~~l~~~~~~~~l~s~s--~d~~i~vw~~~~~~--------~~~~~~~~~~~h~~~v~~i~~~~~~~~l~s~~~dg 336 (809)
+...|.++..+|++..++||| .|+.+++|+.+.-. ..++.+.....|.+.|+|++|++||++|++|+.|+
T Consensus 12 ~~~~IfSIdv~pdg~~~aTgGq~~d~~~~iW~~~~vl~~~~~~~~~l~k~l~~m~~h~~sv~CVR~S~dG~~lAsGSDD~ 91 (942)
T KOG0973|consen 12 NEKSIFSIDVHPDGVKFATGGQVLDGGIVIWSQDPVLDEKEEKNENLPKHLCTMDDHDGSVNCVRFSPDGSYLASGSDDR 91 (942)
T ss_pred CCeeEEEEEecCCceeEecCCccccccceeeccccccchhhhhhcccchhheeeccccCceeEEEECCCCCeEeeccCcc
Confidence 456789999999999999999 89999999775421 13566777889999999999999999999999999
Q ss_pred CEEEEEeeecccceecchhhHHHHHhhccchhhhhccCceeEEeeccccccccceeEEeecCCceEEEEEeeeeeeccee
Q 003579 337 AFRLFSVIQDQQSRELSQRHVAKRARKLKMKEEELKLKPVIAFDCAEIRERDWCNVVTCHMDTAQAYVWRLQNFVLGEHI 416 (809)
Q Consensus 337 ~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~ 416 (809)
.|.+|..... ..... .-...+...+.-|..
T Consensus 92 ~v~iW~~~~~-~~~~~----------------------------------------fgs~g~~~~vE~wk~--------- 121 (942)
T KOG0973|consen 92 LVMIWERAEI-GSGTV----------------------------------------FGSTGGAKNVESWKV--------- 121 (942)
T ss_pred eEEEeeeccc-CCccc----------------------------------------ccccccccccceeeE---------
Confidence 9999986531 00000 000001111112221
Q ss_pred eecCCCCCCCeEEEEEcCCCCEEEEEeCCCcEEEEECCCCceeeeeeCcccccccCccccEEEEEEcCCCCEEEEEeCcC
Q 003579 417 LRPCPENPTAVKACTISACGNFAVLGTAGGWIERFNLQSGISRGSYLDMSERSNYAHNGEVVGVACDSTNTLMISAGYHG 496 (809)
Q Consensus 417 ~~~~~~~~~~v~~v~~s~~g~~l~~g~~~g~i~i~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~l~s~~~dg 496 (809)
.....+|...|..++|+|++.++++++.|++|.+||..+......+. +|.+.|.++.|+|-|+++++-+.|+
T Consensus 122 ~~~l~~H~~DV~Dv~Wsp~~~~lvS~s~DnsViiwn~~tF~~~~vl~--------~H~s~VKGvs~DP~Gky~ASqsdDr 193 (942)
T KOG0973|consen 122 VSILRGHDSDVLDVNWSPDDSLLVSVSLDNSVIIWNAKTFELLKVLR--------GHQSLVKGVSWDPIGKYFASQSDDR 193 (942)
T ss_pred EEEEecCCCccceeccCCCccEEEEecccceEEEEccccceeeeeee--------cccccccceEECCccCeeeeecCCc
Confidence 22233588999999999999999999999999999999997777775 9999999999999999999999999
Q ss_pred eEEEEECCCCceeeeeecC-------CCeEEEEEeeCCCEEEEEeC----CCeEEEEEcCCCeEEEEEecCCCCeeeEEE
Q 003579 497 DIKVWDFKGRDLKSRWEVG-------CSLVKIVYHRVNGLLATVAD----DLVIRLFDVVALRMVRKFEGHTDRITDFCF 565 (809)
Q Consensus 497 ~i~iwd~~~~~~~~~~~~~-------~~i~~~~~s~~~~~la~~~~----d~~I~v~d~~~~~~~~~~~~h~~~I~~l~f 565 (809)
+|+||++.+....+.+..+ .-...+.|||||.+|++... -..+.|.+-.+++.-..|-||.+++..+.|
T Consensus 194 tikvwrt~dw~i~k~It~pf~~~~~~T~f~RlSWSPDG~~las~nA~n~~~~~~~IieR~tWk~~~~LvGH~~p~evvrF 273 (942)
T KOG0973|consen 194 TLKVWRTSDWGIEKSITKPFEESPLTTFFLRLSWSPDGHHLASPNAVNGGKSTIAIIERGTWKVDKDLVGHSAPVEVVRF 273 (942)
T ss_pred eEEEEEcccceeeEeeccchhhCCCcceeeecccCCCcCeecchhhccCCcceeEEEecCCceeeeeeecCCCceEEEEe
Confidence 9999998877666666432 56788999999999998743 357899999999999999999999999999
Q ss_pred CCC-----CC------------EEEEEeCCCeEEEEEcCCccEEEEee--eCcceEEEEEcCCCCeEEEEEeCCCeEEEe
Q 003579 566 SED-----GK------------WLLSSGMDGSLRIWDVILARQIDAIH--VDVSITALSLSPNMDVLATAHVDQNGVYLW 626 (809)
Q Consensus 566 spd-----g~------------~l~s~s~D~~I~vwd~~~~~~i~~~~--~~~~v~~l~~spdg~~lat~~~d~~~i~lW 626 (809)
+|. .+ .+|+||.|++|.||.....+++...+ ....|..++|+|||..|..++.|| +|.+.
T Consensus 274 nP~lfe~~~~ng~~~~~~~~y~i~AvgSqDrSlSVW~T~~~RPl~vi~~lf~~SI~DmsWspdG~~LfacS~DG-tV~~i 352 (942)
T KOG0973|consen 274 NPKLFERNNKNGTSTQPNCYYCIAAVGSQDRSLSVWNTALPRPLFVIHNLFNKSIVDMSWSPDGFSLFACSLDG-TVALI 352 (942)
T ss_pred ChHHhccccccCCccCCCcceEEEEEecCCccEEEEecCCCCchhhhhhhhcCceeeeeEcCCCCeEEEEecCC-eEEEE
Confidence 981 11 57799999999999998888877665 345699999999999999999999 59887
Q ss_pred ec
Q 003579 627 VN 628 (809)
Q Consensus 627 ~~ 628 (809)
..
T Consensus 353 ~F 354 (942)
T KOG0973|consen 353 HF 354 (942)
T ss_pred Ec
Confidence 64
No 90
>KOG0283 consensus WD40 repeat-containing protein [Function unknown]
Probab=99.96 E-value=2.1e-27 Score=250.89 Aligned_cols=299 Identities=17% Similarity=0.245 Sum_probs=219.9
Q ss_pred CCCCCCeeEEEecCCCEEEEEECCCCEEEEEeeecccceecchhhHHHHHhhccchhhhhccCceeEEeeccccccccce
Q 003579 312 GHSAPPLCIRFYANGRHILSAGQDRAFRLFSVIQDQQSRELSQRHVAKRARKLKMKEEELKLKPVIAFDCAEIRERDWCN 391 (809)
Q Consensus 312 ~h~~~v~~i~~~~~~~~l~s~~~dg~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~ 391 (809)
.|.+.|.++.|++||+|||+||.|+.|++|.+...... .+..+........+. .... ..|...-. . ... .-..
T Consensus 265 ah~gaIw~mKFS~DGKyLAsaGeD~virVWkVie~e~~-~~~~~~~~~~~~~~~--~~s~-~~p~~s~~-~-~~~-~~~s 337 (712)
T KOG0283|consen 265 AHKGAIWAMKFSHDGKYLASAGEDGVIRVWKVIESERM-RVAEGDSSCMYFEYN--ANSQ-IEPSTSSE-E-KIS-SRTS 337 (712)
T ss_pred ccCCcEEEEEeCCCCceeeecCCCceEEEEEEeccchh-cccccccchhhhhhh--hccc-cCcccccc-c-ccc-cccc
Confidence 89999999999999999999999999999999874331 111100000000000 0000 00000000 0 000 0000
Q ss_pred eEEeecCCceEEEEEeeeeeecceeeecCCCCCCCeEEEEEcCCCCEEEEEeCCCcEEEEECCCCceeeeeeCccccccc
Q 003579 392 VVTCHMDTAQAYVWRLQNFVLGEHILRPCPENPTAVKACTISACGNFAVLGTAGGWIERFNLQSGISRGSYLDMSERSNY 471 (809)
Q Consensus 392 ~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~v~~v~~s~~g~~l~~g~~~g~i~i~~~~~~~~~~~~~~~~~~~~~ 471 (809)
..-.+..... ...+..........+....+|.+.|..+.||.+ ++|++++.|.+|++|++....++..|
T Consensus 338 ~~~~~~~s~~-~~~p~~~f~f~ekP~~ef~GHt~DILDlSWSKn-~fLLSSSMDKTVRLWh~~~~~CL~~F--------- 406 (712)
T KOG0283|consen 338 SSRKGSQSPC-VLLPLKAFVFSEKPFCEFKGHTADILDLSWSKN-NFLLSSSMDKTVRLWHPGRKECLKVF--------- 406 (712)
T ss_pred ccccccCCcc-ccCCCccccccccchhhhhccchhheecccccC-CeeEeccccccEEeecCCCcceeeEE---------
Confidence 0000000111 122222223334555666789999999999975 68999999999999999999999998
Q ss_pred CccccEEEEEEcC-CCCEEEEEeCcCeEEEEECCCCceeeeeecCCCeEEEEEeeCCCEEEEEeCCCeEEEEEcCCCeEE
Q 003579 472 AHNGEVVGVACDS-TNTLMISAGYHGDIKVWDFKGRDLKSRWEVGCSLVKIVYHRVNGLLATVADDLVIRLFDVVALRMV 550 (809)
Q Consensus 472 ~h~~~v~~l~~~~-~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~i~~~~~s~~~~~la~~~~d~~I~v~d~~~~~~~ 550 (809)
.|..-|+|++|+| |.+++++|+.||.||||++...+...-.+.+.-|++++|.|||++.++|+-+|.+++|+....+.+
T Consensus 407 ~HndfVTcVaFnPvDDryFiSGSLD~KvRiWsI~d~~Vv~W~Dl~~lITAvcy~PdGk~avIGt~~G~C~fY~t~~lk~~ 486 (712)
T KOG0283|consen 407 SHNDFVTCVAFNPVDDRYFISGSLDGKVRLWSISDKKVVDWNDLRDLITAVCYSPDGKGAVIGTFNGYCRFYDTEGLKLV 486 (712)
T ss_pred ecCCeeEEEEecccCCCcEeecccccceEEeecCcCeeEeehhhhhhheeEEeccCCceEEEEEeccEEEEEEccCCeEE
Confidence 7999999999999 669999999999999999999999988889999999999999999999999999999999988776
Q ss_pred EEEec---------CCCCeeeEEECCCC-CEEEEEeCCCeEEEEEcCCccEEEEeeeCcc---eEEEEEcCCCCeEEEEE
Q 003579 551 RKFEG---------HTDRITDFCFSEDG-KWLLSSGMDGSLRIWDVILARQIDAIHVDVS---ITALSLSPNMDVLATAH 617 (809)
Q Consensus 551 ~~~~~---------h~~~I~~l~fspdg-~~l~s~s~D~~I~vwd~~~~~~i~~~~~~~~---v~~l~~spdg~~lat~~ 617 (809)
..+.- |. +|+.+.|.|.. ..|++.+.|..|||+|..+..++..|++... =....|+.||++|++++
T Consensus 487 ~~~~I~~~~~Kk~~~~-rITG~Q~~p~~~~~vLVTSnDSrIRI~d~~~~~lv~KfKG~~n~~SQ~~Asfs~Dgk~IVs~s 565 (712)
T KOG0283|consen 487 SDFHIRLHNKKKKQGK-RITGLQFFPGDPDEVLVTSNDSRIRIYDGRDKDLVHKFKGFRNTSSQISASFSSDGKHIVSAS 565 (712)
T ss_pred EeeeEeeccCccccCc-eeeeeEecCCCCCeEEEecCCCceEEEeccchhhhhhhcccccCCcceeeeEccCCCEEEEee
Confidence 65431 33 79999999743 3466678899999999998888888875433 56788999999999999
Q ss_pred eCCCeEEEeecCc
Q 003579 618 VDQNGVYLWVNRC 630 (809)
Q Consensus 618 ~d~~~i~lW~~~~ 630 (809)
.|. .||+|++..
T Consensus 566 eDs-~VYiW~~~~ 577 (712)
T KOG0283|consen 566 EDS-WVYIWKNDS 577 (712)
T ss_pred cCc-eEEEEeCCC
Confidence 888 699999853
No 91
>KOG0772 consensus Uncharacterized conserved protein, contains WD40 repeat [Function unknown]
Probab=99.96 E-value=3.3e-27 Score=233.99 Aligned_cols=303 Identities=18% Similarity=0.277 Sum_probs=237.4
Q ss_pred EEEeccCCCcEEEEEEecCCCCEEEEEcCCCcEEEEECCCc----eeeeeeecccccceEEEEEecCCCEEEEEcCCCcE
Q 003579 217 VTFTHSMRGAVTALAFSSDGQPLLASGASSGVISIWNLEKR----RLQSVIREAHDNAIISLHFFANEPVLMSASADNSI 292 (809)
Q Consensus 217 ~~~~~~~~~~V~~l~fs~dg~~~lasg~~dg~I~iwdl~~~----~~~~~~~~~h~~~V~~l~~~~~~~~l~s~s~d~~i 292 (809)
..+.++ ...|.++++.|.|. .+++|+.|-+|++||+... +..+.+.......|.+++|++.+..|++.+.....
T Consensus 161 i~l~hg-tk~Vsal~~Dp~Ga-R~~sGs~Dy~v~~wDf~gMdas~~~fr~l~P~E~h~i~sl~ys~Tg~~iLvvsg~aqa 238 (641)
T KOG0772|consen 161 IQLKHG-TKIVSALAVDPSGA-RFVSGSLDYTVKFWDFQGMDASMRSFRQLQPCETHQINSLQYSVTGDQILVVSGSAQA 238 (641)
T ss_pred EeccCC-ceEEEEeeecCCCc-eeeeccccceEEEEecccccccchhhhccCcccccccceeeecCCCCeEEEEecCcce
Confidence 344444 78899999999999 8999999999999998754 33444444566789999999999988888888899
Q ss_pred EEEEeeCCC------CC--ceeEEeccCCCCCCeeEEEec-CCCEEEEEECCCCEEEEEeeecccceecchhhHHHHHhh
Q 003579 293 KMWIFDTTD------GD--PRLLRFRSGHSAPPLCIRFYA-NGRHILSAGQDRAFRLFSVIQDQQSRELSQRHVAKRARK 363 (809)
Q Consensus 293 ~vw~~~~~~------~~--~~~~~~~~~h~~~v~~i~~~~-~~~~l~s~~~dg~i~~wd~~~~~~~~~~~~~~~~~~~~~ 363 (809)
+++|-+... +. .+-+....||...++|.+|+| +...+++++.||++|+|++...+...+...
T Consensus 239 kl~DRdG~~~~e~~KGDQYI~Dm~nTKGHia~lt~g~whP~~k~~FlT~s~DgtlRiWdv~~~k~q~qVik--------- 309 (641)
T KOG0772|consen 239 KLLDRDGFEIVEFSKGDQYIRDMYNTKGHIAELTCGCWHPDNKEEFLTCSYDGTLRIWDVNNTKSQLQVIK--------- 309 (641)
T ss_pred eEEccCCceeeeeeccchhhhhhhccCCceeeeeccccccCcccceEEecCCCcEEEEecCCchhheeEEe---------
Confidence 999765431 10 111233468999999999999 456799999999999999876542221100
Q ss_pred ccchhhhhccCceeEEeeccccccccceeEEeecCCceEEEEEeeeeeecceeeecCCCCCCCeEEEEEcCCCCEEEEEe
Q 003579 364 LKMKEEELKLKPVIAFDCAEIRERDWCNVVTCHMDTAQAYVWRLQNFVLGEHILRPCPENPTAVKACTISACGNFAVLGT 443 (809)
Q Consensus 364 ~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~v~~v~~s~~g~~l~~g~ 443 (809)
-....+..-.+++++|+++|+.++.|+
T Consensus 310 -----------------------------------------------------~k~~~g~Rv~~tsC~~nrdg~~iAagc 336 (641)
T KOG0772|consen 310 -----------------------------------------------------TKPAGGKRVPVTSCAWNRDGKLIAAGC 336 (641)
T ss_pred -----------------------------------------------------eccCCCcccCceeeecCCCcchhhhcc
Confidence 011113346889999999999999999
Q ss_pred CCCcEEEEECCCCceeeeeeCcccccccCccc--cEEEEEEcCCCCEEEEEeCcCeEEEEECCCCc-eeeeee---cCCC
Q 003579 444 AGGWIERFNLQSGISRGSYLDMSERSNYAHNG--EVVGVACDSTNTLMISAGYHGDIKVWDFKGRD-LKSRWE---VGCS 517 (809)
Q Consensus 444 ~~g~i~i~~~~~~~~~~~~~~~~~~~~~~h~~--~v~~l~~~~~~~~l~s~~~dg~i~iwd~~~~~-~~~~~~---~~~~ 517 (809)
.||.|.+|+..+......+.. ..+|.. .|+++.|+++|++|++-|.|+++++||++..+ ++.... ...+
T Consensus 337 ~DGSIQ~W~~~~~~v~p~~~v-----k~AH~~g~~Itsi~FS~dg~~LlSRg~D~tLKvWDLrq~kkpL~~~tgL~t~~~ 411 (641)
T KOG0772|consen 337 LDGSIQIWDKGSRTVRPVMKV-----KDAHLPGQDITSISFSYDGNYLLSRGFDDTLKVWDLRQFKKPLNVRTGLPTPFP 411 (641)
T ss_pred cCCceeeeecCCcccccceEe-----eeccCCCCceeEEEeccccchhhhccCCCceeeeeccccccchhhhcCCCccCC
Confidence 999999999866544433321 147877 99999999999999999999999999998653 333322 2367
Q ss_pred eEEEEEeeCCCEEEEEeC------CCeEEEEEcCCCeEEEEEecCCCCeeeEEECCCCCEEEEEeCCCeEEEEEcCC
Q 003579 518 LVKIVYHRVNGLLATVAD------DLVIRLFDVVALRMVRKFEGHTDRITDFCFSEDGKWLLSSGMDGSLRIWDVIL 588 (809)
Q Consensus 518 i~~~~~s~~~~~la~~~~------d~~I~v~d~~~~~~~~~~~~h~~~I~~l~fspdg~~l~s~s~D~~I~vwd~~~ 588 (809)
-+.++|||+.++|++|.. .|.+.+||..+...+.++.-....|..+.|+|.-+.|+.++.||+++||-=++
T Consensus 412 ~tdc~FSPd~kli~TGtS~~~~~~~g~L~f~d~~t~d~v~ki~i~~aSvv~~~WhpkLNQi~~gsgdG~~~vyYdp~ 488 (641)
T KOG0772|consen 412 GTDCCFSPDDKLILTGTSAPNGMTAGTLFFFDRMTLDTVYKIDISTASVVRCLWHPKLNQIFAGSGDGTAHVYYDPN 488 (641)
T ss_pred CCccccCCCceEEEecccccCCCCCceEEEEeccceeeEEEecCCCceEEEEeecchhhheeeecCCCceEEEECcc
Confidence 788999999999999864 57899999999999999887888899999999988899999999999985443
No 92
>KOG0277 consensus Peroxisomal targeting signal type 2 receptor [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.96 E-value=1.8e-27 Score=215.58 Aligned_cols=280 Identities=18% Similarity=0.287 Sum_probs=221.0
Q ss_pred EEEEEEecCCCCEEEEEc-------CCCcEEEEECCCceeeeeee-cccccceEEEEEecCC-CEEEEEcCCCcEEEEEe
Q 003579 227 VTALAFSSDGQPLLASGA-------SSGVISIWNLEKRRLQSVIR-EAHDNAIISLHFFANE-PVLMSASADNSIKMWIF 297 (809)
Q Consensus 227 V~~l~fs~dg~~~lasg~-------~dg~I~iwdl~~~~~~~~~~-~~h~~~V~~l~~~~~~-~~l~s~s~d~~i~vw~~ 297 (809)
=.++.|||--...||++. ..|.+.|.++...+-+.... ..-...+..++|+++. +.+++++.||++++||.
T Consensus 11 GysvqfSPf~~nrLavAt~q~yGl~G~G~L~ile~~~~~gi~e~~s~d~~D~LfdV~Wse~~e~~~~~a~GDGSLrl~d~ 90 (311)
T KOG0277|consen 11 GYSVQFSPFVENRLAVATAQHYGLAGNGRLFILEVTDPKGIQECQSYDTEDGLFDVAWSENHENQVIAASGDGSLRLFDL 90 (311)
T ss_pred cceeEecccccchhheeehhhcccccCceEEEEecCCCCCeEEEEeeecccceeEeeecCCCcceEEEEecCceEEEecc
Confidence 467889984322344332 36899999996443333332 2346789999999864 58899999999999985
Q ss_pred eCCCCCceeEEeccCCCCCCeeEEEec-CCCEEEEEECCCCEEEEEeeecccceecchhhHHHHHhhccchhhhhccCce
Q 003579 298 DTTDGDPRLLRFRSGHSAPPLCIRFYA-NGRHILSAGQDRAFRLFSVIQDQQSRELSQRHVAKRARKLKMKEEELKLKPV 376 (809)
Q Consensus 298 ~~~~~~~~~~~~~~~h~~~v~~i~~~~-~~~~l~s~~~dg~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i 376 (809)
.... .++..++.|...|.++.|++ +++.+++++.|++|++|+...+...
T Consensus 91 ~~~s---~Pi~~~kEH~~EV~Svdwn~~~r~~~ltsSWD~TiKLW~~~r~~Sv--------------------------- 140 (311)
T KOG0277|consen 91 TMPS---KPIHKFKEHKREVYSVDWNTVRRRIFLTSSWDGTIKLWDPNRPNSV--------------------------- 140 (311)
T ss_pred CCCC---cchhHHHhhhhheEEeccccccceeEEeeccCCceEeecCCCCcce---------------------------
Confidence 4443 46788899999999999998 6777888899999999986432211
Q ss_pred eEEeeccccccccceeEEeecCCceEEEEEeeeeeecceeeecCCCCCCCeEEEEEcCCCCEEEEEeCCCcEEEEECCCC
Q 003579 377 IAFDCAEIRERDWCNVVTCHMDTAQAYVWRLQNFVLGEHILRPCPENPTAVKACTISACGNFAVLGTAGGWIERFNLQSG 456 (809)
Q Consensus 377 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~v~~v~~s~~g~~l~~g~~~g~i~i~~~~~~ 456 (809)
T Consensus 141 -------------------------------------------------------------------------------- 140 (311)
T KOG0277|consen 141 -------------------------------------------------------------------------------- 140 (311)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred ceeeeeeCcccccccCccccEEEEEEcCC-CCEEEEEeCcCeEEEEECCCCceeeeeecC-CCeEEEEEee-CCCEEEEE
Q 003579 457 ISRGSYLDMSERSNYAHNGEVVGVACDST-NTLMISAGYHGDIKVWDFKGRDLKSRWEVG-CSLVKIVYHR-VNGLLATV 533 (809)
Q Consensus 457 ~~~~~~~~~~~~~~~~h~~~v~~l~~~~~-~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~-~~i~~~~~s~-~~~~la~~ 533 (809)
.++ .+|...|...+|+|. ..++++++.||.+++||++.......++.+ ..|.++.|+. +..++++|
T Consensus 141 ---~Tf--------~gh~~~Iy~a~~sp~~~nlfas~Sgd~~l~lwdvr~~gk~~~i~ah~~Eil~cdw~ky~~~vl~Tg 209 (311)
T KOG0277|consen 141 ---QTF--------NGHNSCIYQAAFSPHIPNLFASASGDGTLRLWDVRSPGKFMSIEAHNSEILCCDWSKYNHNVLATG 209 (311)
T ss_pred ---Eee--------cCCccEEEEEecCCCCCCeEEEccCCceEEEEEecCCCceeEEEeccceeEeecccccCCcEEEec
Confidence 112 289999999999994 589999999999999999854333335555 6999999998 55688999
Q ss_pred eCCCeEEEEEcCCC-eEEEEEecCCCCeeeEEECCCC-CEEEEEeCCCeEEEEEcCCc-cEEEEeeeCcc-eEEEEEcC-
Q 003579 534 ADDLVIRLFDVVAL-RMVRKFEGHTDRITDFCFSEDG-KWLLSSGMDGSLRIWDVILA-RQIDAIHVDVS-ITALSLSP- 608 (809)
Q Consensus 534 ~~d~~I~v~d~~~~-~~~~~~~~h~~~I~~l~fspdg-~~l~s~s~D~~I~vwd~~~~-~~i~~~~~~~~-v~~l~~sp- 608 (809)
+.|+.||.||++.. .++.++.||.-.|..+.|||.. ..|++++.|-++||||...+ .++.+..+|.. +..+.||+
T Consensus 210 ~vd~~vr~wDir~~r~pl~eL~gh~~AVRkvk~Sph~~~lLaSasYDmT~riw~~~~~ds~~e~~~~HtEFv~g~Dws~~ 289 (311)
T KOG0277|consen 210 GVDNLVRGWDIRNLRTPLFELNGHGLAVRKVKFSPHHASLLASASYDMTVRIWDPERQDSAIETVDHHTEFVCGLDWSLF 289 (311)
T ss_pred CCCceEEEEehhhccccceeecCCceEEEEEecCcchhhHhhhccccceEEecccccchhhhhhhhccceEEeccccccc
Confidence 99999999999875 4588899999999999999964 57899999999999999854 55667777777 89999998
Q ss_pred CCCeEEEEEeCCCeEEEeec
Q 003579 609 NMDVLATAHVDQNGVYLWVN 628 (809)
Q Consensus 609 dg~~lat~~~d~~~i~lW~~ 628 (809)
++.++|+++-|+ .++||+.
T Consensus 290 ~~~~vAs~gWDe-~l~Vw~p 308 (311)
T KOG0277|consen 290 DPGQVASTGWDE-LLYVWNP 308 (311)
T ss_pred cCceeeeccccc-ceeeecc
Confidence 778999999999 4999984
No 93
>KOG0294 consensus WD40 repeat-containing protein [Function unknown]
Probab=99.96 E-value=2.1e-26 Score=215.21 Aligned_cols=264 Identities=22% Similarity=0.380 Sum_probs=212.7
Q ss_pred EEEEeCCCeEEEEEeeCC------------eEEEEEeccCCCcEEEEEEecCCCCEEEEEcCCCcEEEEECCCceeeeee
Q 003579 196 VAVGCSDGKIHVHNVRYD------------EELVTFTHSMRGAVTALAFSSDGQPLLASGASSGVISIWNLEKRRLQSVI 263 (809)
Q Consensus 196 la~g~~dg~i~iwd~~~~------------~~~~~~~~~~~~~V~~l~fs~dg~~~lasg~~dg~I~iwdl~~~~~~~~~ 263 (809)
+++|+....|.=+++.-. .++..+.. |.++|++++.+ |. ++|+|+.|-+|+|||+.+...+..+
T Consensus 4 iIvGtYE~~i~Gf~l~~~~~~~~~s~~~~l~~lF~~~a-H~~sitavAVs--~~-~~aSGssDetI~IYDm~k~~qlg~l 79 (362)
T KOG0294|consen 4 IIVGTYEHVILGFKLDPEPKGCTDSVKPTLKPLFAFSA-HAGSITALAVS--GP-YVASGSSDETIHIYDMRKRKQLGIL 79 (362)
T ss_pred EEEeeeeeEEEEEEeccCccccccccceeeeccccccc-cccceeEEEec--ce-eEeccCCCCcEEEEeccchhhhcce
Confidence 566666665555554311 12333444 48899999986 55 9999999999999999999999998
Q ss_pred ecccccceEEEEEecCCC--EEEEEcCCCcEEEEEeeCCCCCceeEEeccCCCCCCeeEEEecCCCEEEEEECCCCEEEE
Q 003579 264 REAHDNAIISLHFFANEP--VLMSASADNSIKMWIFDTTDGDPRLLRFRSGHSAPPLCIRFYANGRHILSAGQDRAFRLF 341 (809)
Q Consensus 264 ~~~h~~~V~~l~~~~~~~--~l~s~s~d~~i~vw~~~~~~~~~~~~~~~~~h~~~v~~i~~~~~~~~l~s~~~dg~i~~w 341 (809)
. .|.+.|+++.|.++-. .|++|+.||.|.+|+.. .+.++..+.+|.+.|+.++.+|.|+..++.+.|+.++.|
T Consensus 80 l-~HagsitaL~F~~~~S~shLlS~sdDG~i~iw~~~----~W~~~~slK~H~~~Vt~lsiHPS~KLALsVg~D~~lr~W 154 (362)
T KOG0294|consen 80 L-SHAGSITALKFYPPLSKSHLLSGSDDGHIIIWRVG----SWELLKSLKAHKGQVTDLSIHPSGKLALSVGGDQVLRTW 154 (362)
T ss_pred e-ccccceEEEEecCCcchhheeeecCCCcEEEEEcC----CeEEeeeecccccccceeEecCCCceEEEEcCCceeeee
Confidence 8 8999999999999775 89999999999999764 348899999999999999999999999999999999999
Q ss_pred EeeecccceecchhhHHHHHhhccchhhhhccCceeEEeeccccccccceeEEeecCCceEEEEEeeeeeecceeeecCC
Q 003579 342 SVIQDQQSRELSQRHVAKRARKLKMKEEELKLKPVIAFDCAEIRERDWCNVVTCHMDTAQAYVWRLQNFVLGEHILRPCP 421 (809)
Q Consensus 342 d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~ 421 (809)
++.+++....+..
T Consensus 155 NLV~Gr~a~v~~L------------------------------------------------------------------- 167 (362)
T KOG0294|consen 155 NLVRGRVAFVLNL------------------------------------------------------------------- 167 (362)
T ss_pred hhhcCccceeecc-------------------------------------------------------------------
Confidence 9876543222110
Q ss_pred CCCCCeEEEEEcCCCCEEEEEeCCCcEEEEECCCCceeeeeeCcccccccCccccEEEEEEcCCCCEEEEEeCcCeEEEE
Q 003579 422 ENPTAVKACTISACGNFAVLGTAGGWIERFNLQSGISRGSYLDMSERSNYAHNGEVVGVACDSTNTLMISAGYHGDIKVW 501 (809)
Q Consensus 422 ~~~~~v~~v~~s~~g~~l~~g~~~g~i~i~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~l~s~~~dg~i~iw 501 (809)
.+. -+.+.|+|.|.+++.++. ..|-+|
T Consensus 168 --------------------------------------------------~~~--at~v~w~~~Gd~F~v~~~-~~i~i~ 194 (362)
T KOG0294|consen 168 --------------------------------------------------KNK--ATLVSWSPQGDHFVVSGR-NKIDIY 194 (362)
T ss_pred --------------------------------------------------CCc--ceeeEEcCCCCEEEEEec-cEEEEE
Confidence 111 122777888887777766 457788
Q ss_pred ECCCCceeeeeecCCCeEEEEEeeCCCEEEEEeCCCeEEEEEcCCCeEEEEEecCCCCeeeEEE--CCCCCEEEEEeCCC
Q 003579 502 DFKGRDLKSRWEVGCSLVKIVYHRVNGLLATVADDLVIRLFDVVALRMVRKFEGHTDRITDFCF--SEDGKWLLSSGMDG 579 (809)
Q Consensus 502 d~~~~~~~~~~~~~~~i~~~~~s~~~~~la~~~~d~~I~v~d~~~~~~~~~~~~h~~~I~~l~f--spdg~~l~s~s~D~ 579 (809)
.+.+..+...+.....+.++.|- ++..|++|.+|+.|.+||..+..+...+.+|..+|.++.+ .|++.+|+|+|.||
T Consensus 195 q~d~A~v~~~i~~~~r~l~~~~l-~~~~L~vG~d~~~i~~~D~ds~~~~~~~~AH~~RVK~i~~~~~~~~~~lvTaSSDG 273 (362)
T KOG0294|consen 195 QLDNASVFREIENPKRILCATFL-DGSELLVGGDNEWISLKDTDSDTPLTEFLAHENRVKDIASYTNPEHEYLVTASSDG 273 (362)
T ss_pred ecccHhHhhhhhccccceeeeec-CCceEEEecCCceEEEeccCCCccceeeecchhheeeeEEEecCCceEEEEeccCc
Confidence 88887777777766667676665 4678899999999999999999999999999999999985 56789999999999
Q ss_pred eEEEEEcCCc
Q 003579 580 SLRIWDVILA 589 (809)
Q Consensus 580 ~I~vwd~~~~ 589 (809)
.|+|||+...
T Consensus 274 ~I~vWd~~~~ 283 (362)
T KOG0294|consen 274 FIKVWDIDME 283 (362)
T ss_pred eEEEEEcccc
Confidence 9999999865
No 94
>KOG0274 consensus Cdc4 and related F-box and WD-40 proteins [General function prediction only]
Probab=99.96 E-value=1e-26 Score=250.25 Aligned_cols=272 Identities=18% Similarity=0.323 Sum_probs=238.1
Q ss_pred CEEEEEeCCCeEEEEeCCCCceEEE-EcCCCCCEEEEEEcCCCCEEEEEeCCCeEEEEEeeCCeEEEEEeccCCCcEEEE
Q 003579 152 NKVIVGSQEGSLQLWNISTKKKLYE-FKGWGSSISSCVSSPALDVVAVGCSDGKIHVHNVRYDEELVTFTHSMRGAVTAL 230 (809)
Q Consensus 152 ~~l~~~~~dg~i~lwd~~~~~~~~~-~~~~~~~I~~l~~sp~~~~la~g~~dg~i~iwd~~~~~~~~~~~~~~~~~V~~l 230 (809)
+++++++.+++|.+|+..+++.+.. +.+|.+.|.++++..-++++++|+.|.++++||..+|++...+..| .+.|.++
T Consensus 219 ~~~~~~s~~~tl~~~~~~~~~~i~~~l~GH~g~V~~l~~~~~~~~lvsgS~D~t~rvWd~~sg~C~~~l~gh-~stv~~~ 297 (537)
T KOG0274|consen 219 GFFKSGSDDSTLHLWDLNNGYLILTRLVGHFGGVWGLAFPSGGDKLVSGSTDKTERVWDCSTGECTHSLQGH-TSSVRCL 297 (537)
T ss_pred CeEEecCCCceeEEeecccceEEEeeccCCCCCceeEEEecCCCEEEEEecCCcEEeEecCCCcEEEEecCC-CceEEEE
Confidence 5799999999999999999999998 9999999999999987889999999999999999999999999976 8889999
Q ss_pred EEecCCCCEEEEEcCCCcEEEEECCCceeeeeeecccccceEEEEEecCCCEEEEEcCCCcEEEEEeeCCCCCceeEEec
Q 003579 231 AFSSDGQPLLASGASSGVISIWNLEKRRLQSVIREAHDNAIISLHFFANEPVLMSASADNSIKMWIFDTTDGDPRLLRFR 310 (809)
Q Consensus 231 ~fs~dg~~~lasg~~dg~I~iwdl~~~~~~~~~~~~h~~~V~~l~~~~~~~~l~s~s~d~~i~vw~~~~~~~~~~~~~~~ 310 (809)
...+. ++++|+.|.+|++|++.++..+..+. +|.++|.++... ++++++|+.|++|++|++... +++..+
T Consensus 298 ~~~~~---~~~sgs~D~tVkVW~v~n~~~l~l~~-~h~~~V~~v~~~--~~~lvsgs~d~~v~VW~~~~~----~cl~sl 367 (537)
T KOG0274|consen 298 TIDPF---LLVSGSRDNTVKVWDVTNGACLNLLR-GHTGPVNCVQLD--EPLLVSGSYDGTVKVWDPRTG----KCLKSL 367 (537)
T ss_pred EccCc---eEeeccCCceEEEEeccCcceEEEec-cccccEEEEEec--CCEEEEEecCceEEEEEhhhc----eeeeee
Confidence 87654 78889999999999999999999998 799999999987 789999999999999998855 789999
Q ss_pred cCCCCCCeeEEEecCCCEEEEEECCCCEEEEEeeec-ccceecchhhHHHHHhhccchhhhhccCceeEEeecccccccc
Q 003579 311 SGHSAPPLCIRFYANGRHILSAGQDRAFRLFSVIQD-QQSRELSQRHVAKRARKLKMKEEELKLKPVIAFDCAEIRERDW 389 (809)
Q Consensus 311 ~~h~~~v~~i~~~~~~~~l~s~~~dg~i~~wd~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~ 389 (809)
.||...|.++.+.+. ..+++|+.|++|++||+.+. ++...
T Consensus 368 ~gH~~~V~sl~~~~~-~~~~Sgs~D~~IkvWdl~~~~~c~~t-------------------------------------- 408 (537)
T KOG0274|consen 368 SGHTGRVYSLIVDSE-NRLLSGSLDTTIKVWDLRTKRKCIHT-------------------------------------- 408 (537)
T ss_pred cCCcceEEEEEecCc-ceEEeeeeccceEeecCCchhhhhhh--------------------------------------
Confidence 999999999988655 79999999999999998765 22211
Q ss_pred ceeEEeecCCceEEEEEeeeeeecceeeecCCCCCCCeEEEEEcCCCCEEEEEeCCCcEEEEECCCCceeeeeeCccccc
Q 003579 390 CNVVTCHMDTAQAYVWRLQNFVLGEHILRPCPENPTAVKACTISACGNFAVLGTAGGWIERFNLQSGISRGSYLDMSERS 469 (809)
Q Consensus 390 ~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~v~~v~~s~~g~~l~~g~~~g~i~i~~~~~~~~~~~~~~~~~~~ 469 (809)
T Consensus 409 -------------------------------------------------------------------------------- 408 (537)
T KOG0274|consen 409 -------------------------------------------------------------------------------- 408 (537)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred ccCccccEEEEEEcCCCCEEEEEeCcCeEEEEECCCCceeeeeecC--CCeEEEEEeeCCCEEEEEeCCCeEEEEEcCCC
Q 003579 470 NYAHNGEVVGVACDSTNTLMISAGYHGDIKVWDFKGRDLKSRWEVG--CSLVKIVYHRVNGLLATVADDLVIRLFDVVAL 547 (809)
Q Consensus 470 ~~~h~~~v~~l~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~--~~i~~~~~s~~~~~la~~~~d~~I~v~d~~~~ 547 (809)
+.+|..-+.++.+ .++.|++++.|++|++||..++++++.+... ..+..+++. ...+++++.|+.+++||++++
T Consensus 409 l~~h~~~v~~l~~--~~~~Lvs~~aD~~Ik~WD~~~~~~~~~~~~~~~~~v~~l~~~--~~~il~s~~~~~~~l~dl~~~ 484 (537)
T KOG0274|consen 409 LQGHTSLVSSLLL--RDNFLVSSSADGTIKLWDAEEGECLRTLEGRHVGGVSALALG--KEEILCSSDDGSVKLWDLRSG 484 (537)
T ss_pred hcCCccccccccc--ccceeEeccccccEEEeecccCceeeeeccCCcccEEEeecC--cceEEEEecCCeeEEEecccC
Confidence 1266666655554 4678999999999999999999999999884 777777775 578889999999999999999
Q ss_pred eEEEEEecCC
Q 003579 548 RMVRKFEGHT 557 (809)
Q Consensus 548 ~~~~~~~~h~ 557 (809)
+..+.+-.+.
T Consensus 485 ~~~~~l~~~~ 494 (537)
T KOG0274|consen 485 TLIRTLLSTD 494 (537)
T ss_pred chhhhhhhcc
Confidence 9988774443
No 95
>KOG0646 consensus WD40 repeat protein [General function prediction only]
Probab=99.96 E-value=5e-27 Score=230.84 Aligned_cols=296 Identities=19% Similarity=0.273 Sum_probs=238.6
Q ss_pred EeCC-CeEEEEEeeCCeEEEEEeccCCCcEEEEEEecCCCCEEEEEcCCCcEEEEECCCceeeeeeecccccceEEEEEe
Q 003579 199 GCSD-GKIHVHNVRYDEELVTFTHSMRGAVTALAFSSDGQPLLASGASSGVISIWNLEKRRLQSVIREAHDNAIISLHFF 277 (809)
Q Consensus 199 g~~d-g~i~iwd~~~~~~~~~~~~~~~~~V~~l~fs~dg~~~lasg~~dg~I~iwdl~~~~~~~~~~~~h~~~V~~l~~~ 277 (809)
++.| ..+.+||+++|....++++.....-.++..- .+.+++++-.....|.+|.+.......... --.++|.+++-+
T Consensus 13 sS~d~~~~~~~dl~TGt~~~~ykg~~~a~~~sl~~l-~~~yllsaq~~rp~l~vw~i~k~~~~~q~~-v~Pg~v~al~s~ 90 (476)
T KOG0646|consen 13 SSFDPINCIVWDLRTGTSLLQYKGSYLAQAASLTAL-NNEYLLSAQLKRPLLHVWEILKKDQVVQYI-VLPGPVHALASS 90 (476)
T ss_pred cCCCCcceeEEecCCCceeEEecCcccccchhhhhh-chhheeeecccCccccccccCchhhhhhhc-ccccceeeeecC
Confidence 3334 5699999999999999987523333333322 224345444466789999987765544222 457889999999
Q ss_pred cCCCEEEEEcCCCcEEEEEeeCCCCCceeEEeccCCCCCCeeEEEecCCCEEEEEECCCCEEEEEeeecccceecchhhH
Q 003579 278 ANEPVLMSASADNSIKMWIFDTTDGDPRLLRFRSGHSAPPLCIRFYANGRHILSAGQDRAFRLFSVIQDQQSRELSQRHV 357 (809)
Q Consensus 278 ~~~~~l~s~s~d~~i~vw~~~~~~~~~~~~~~~~~h~~~v~~i~~~~~~~~l~s~~~dg~i~~wd~~~~~~~~~~~~~~~ 357 (809)
|+|.+|+.|+..+.|++|.+.++ .++..+.+|..+|+|+.|+.||.+|++||.||.|.+|++..--
T Consensus 91 n~G~~l~ag~i~g~lYlWelssG----~LL~v~~aHYQ~ITcL~fs~dgs~iiTgskDg~V~vW~l~~lv---------- 156 (476)
T KOG0646|consen 91 NLGYFLLAGTISGNLYLWELSSG----ILLNVLSAHYQSITCLKFSDDGSHIITGSKDGAVLVWLLTDLV---------- 156 (476)
T ss_pred CCceEEEeecccCcEEEEEeccc----cHHHHHHhhccceeEEEEeCCCcEEEecCCCccEEEEEEEeec----------
Confidence 99999999989999999998877 6888889999999999999999999999999999999974210
Q ss_pred HHHHhhccchhhhhccCceeEEeeccccccccceeEEeecCCceEEEEEeeeeeecceeeecCCCCCCCeEEEEEcCCCC
Q 003579 358 AKRARKLKMKEEELKLKPVIAFDCAEIRERDWCNVVTCHMDTAQAYVWRLQNFVLGEHILRPCPENPTAVKACTISACGN 437 (809)
Q Consensus 358 ~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~v~~v~~s~~g~ 437 (809)
T Consensus 157 -------------------------------------------------------------------------------- 156 (476)
T KOG0646|consen 157 -------------------------------------------------------------------------------- 156 (476)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred EEEEEeCCCcEEEEECCCCceeeeeeCcccccccCccccEEEEEEcCC--CCEEEEEeCcCeEEEEECCCCceeeeeecC
Q 003579 438 FAVLGTAGGWIERFNLQSGISRGSYLDMSERSNYAHNGEVVGVACDST--NTLMISAGYHGDIKVWDFKGRDLKSRWEVG 515 (809)
Q Consensus 438 ~l~~g~~~g~i~i~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~--~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~ 515 (809)
....++ +-.....+ ..|.-+|+.+.+.+. +.+++|++.|.++++||+..+.++.++...
T Consensus 157 ---~a~~~~--------~~~p~~~f--------~~HtlsITDl~ig~Gg~~~rl~TaS~D~t~k~wdlS~g~LLlti~fp 217 (476)
T KOG0646|consen 157 ---SADNDH--------SVKPLHIF--------SDHTLSITDLQIGSGGTNARLYTASEDRTIKLWDLSLGVLLLTITFP 217 (476)
T ss_pred ---ccccCC--------Cccceeee--------ccCcceeEEEEecCCCccceEEEecCCceEEEEEeccceeeEEEecC
Confidence 111111 11111222 289999999998775 478999999999999999999999999999
Q ss_pred CCeEEEEEeeCCCEEEEEeCCCeEEEEEcCCC----------------eEEEEEecCCC--CeeeEEECCCCCEEEEEeC
Q 003579 516 CSLVKIVYHRVNGLLATVADDLVIRLFDVVAL----------------RMVRKFEGHTD--RITDFCFSEDGKWLLSSGM 577 (809)
Q Consensus 516 ~~i~~~~~s~~~~~la~~~~d~~I~v~d~~~~----------------~~~~~~~~h~~--~I~~l~fspdg~~l~s~s~ 577 (809)
..+.+++..|.+..+.+|+.+|.|.+.++... ..+..+.||.+ .|++++.+-||..|++|+.
T Consensus 218 ~si~av~lDpae~~~yiGt~~G~I~~~~~~~~~~~~~~v~~k~~~~~~t~~~~~~Gh~~~~~ITcLais~DgtlLlSGd~ 297 (476)
T KOG0646|consen 218 SSIKAVALDPAERVVYIGTEEGKIFQNLLFKLSGQSAGVNQKGRHEENTQINVLVGHENESAITCLAISTDGTLLLSGDE 297 (476)
T ss_pred CcceeEEEcccccEEEecCCcceEEeeehhcCCcccccccccccccccceeeeeccccCCcceeEEEEecCccEEEeeCC
Confidence 99999999999999999999999999887543 34667889998 9999999999999999999
Q ss_pred CCeEEEEEcCCccEEEEee-eCcceEEEEEcCC
Q 003579 578 DGSLRIWDVILARQIDAIH-VDVSITALSLSPN 609 (809)
Q Consensus 578 D~~I~vwd~~~~~~i~~~~-~~~~v~~l~~spd 609 (809)
||.|+|||+.+.++++++. ..++|+.+.+.|=
T Consensus 298 dg~VcvWdi~S~Q~iRtl~~~kgpVtnL~i~~~ 330 (476)
T KOG0646|consen 298 DGKVCVWDIYSKQCIRTLQTSKGPVTNLQINPL 330 (476)
T ss_pred CCCEEEEecchHHHHHHHhhhccccceeEeecc
Confidence 9999999999999999988 6778999999664
No 96
>KOG0299 consensus U3 snoRNP-associated protein (contains WD40 repeats) [RNA processing and modification]
Probab=99.96 E-value=7e-27 Score=229.28 Aligned_cols=284 Identities=23% Similarity=0.325 Sum_probs=232.8
Q ss_pred EEEEcCCCCCEEEEEEcCCCCEEEEEeCCCeEEEEEeeCCeEEE-EEe----------------ccCCCcEEEEEEecCC
Q 003579 174 LYEFKGWGSSISSCVSSPALDVVAVGCSDGKIHVHNVRYDEELV-TFT----------------HSMRGAVTALAFSSDG 236 (809)
Q Consensus 174 ~~~~~~~~~~I~~l~~sp~~~~la~g~~dg~i~iwd~~~~~~~~-~~~----------------~~~~~~V~~l~fs~dg 236 (809)
...+..|.-+|++++++|+..++.+++.+|+|.=|++.+++... .+. ..|...+.+++.++||
T Consensus 135 ~~~~~~H~~s~~~vals~d~~~~fsask~g~i~kw~v~tgk~~~~i~~~~ev~k~~~~~~k~~r~~h~keil~~avS~Dg 214 (479)
T KOG0299|consen 135 FRVIGKHQLSVTSVALSPDDKRVFSASKDGTILKWDVLTGKKDRYIIERDEVLKSHGNPLKESRKGHVKEILTLAVSSDG 214 (479)
T ss_pred ceeeccccCcceEEEeeccccceeecCCCcceeeeehhcCcccccccccchhhhhccCCCCcccccccceeEEEEEcCCC
Confidence 56678899999999999999999999999999999998887431 111 1346789999999999
Q ss_pred CCEEEEEcCCCcEEEEECCCceeeeeeecccccceEEEEEecCCCEEEEEcCCCcEEEEEeeCCCCCceeEEeccCCCCC
Q 003579 237 QPLLASGASSGVISIWNLEKRRLQSVIREAHDNAIISLHFFANEPVLMSASADNSIKMWIFDTTDGDPRLLRFRSGHSAP 316 (809)
Q Consensus 237 ~~~lasg~~dg~I~iwdl~~~~~~~~~~~~h~~~V~~l~~~~~~~~l~s~s~d~~i~vw~~~~~~~~~~~~~~~~~h~~~ 316 (809)
+ +||+|+.|..|.||+.++.+.+..+. +|.+.|.+++|-.+...|++++.|+++++|+++.. ..+.++.||...
T Consensus 215 k-ylatgg~d~~v~Iw~~~t~ehv~~~~-ghr~~V~~L~fr~gt~~lys~s~Drsvkvw~~~~~----s~vetlyGHqd~ 288 (479)
T KOG0299|consen 215 K-YLATGGRDRHVQIWDCDTLEHVKVFK-GHRGAVSSLAFRKGTSELYSASADRSVKVWSIDQL----SYVETLYGHQDG 288 (479)
T ss_pred c-EEEecCCCceEEEecCcccchhhccc-ccccceeeeeeecCccceeeeecCCceEEEehhHh----HHHHHHhCCccc
Confidence 9 99999999999999999999999988 99999999999998889999999999999998876 567778899999
Q ss_pred CeeEEEecCCCEEEEEECCCCEEEEEeeecccceecchhhHHHHHhhccchhhhhccCceeEEeeccccccccceeEEee
Q 003579 317 PLCIRFYANGRHILSAGQDRAFRLFSVIQDQQSRELSQRHVAKRARKLKMKEEELKLKPVIAFDCAEIRERDWCNVVTCH 396 (809)
Q Consensus 317 v~~i~~~~~~~~l~s~~~dg~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~ 396 (809)
|..|.-..-++.+-+|+.|+++++|++....+..
T Consensus 289 v~~IdaL~reR~vtVGgrDrT~rlwKi~eesqli---------------------------------------------- 322 (479)
T KOG0299|consen 289 VLGIDALSRERCVTVGGRDRTVRLWKIPEESQLI---------------------------------------------- 322 (479)
T ss_pred eeeechhcccceEEeccccceeEEEeccccceee----------------------------------------------
Confidence 9999999888888888899999999973321100
Q ss_pred cCCceEEEEEeeeeeecceeeecCCCCCCCeEEEEEcCCCCEEEEEeCCCcEEEEECCCCceeeeeeCcccccccCcccc
Q 003579 397 MDTAQAYVWRLQNFVLGEHILRPCPENPTAVKACTISACGNFAVLGTAGGWIERFNLQSGISRGSYLDMSERSNYAHNGE 476 (809)
Q Consensus 397 ~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~v~~v~~s~~g~~l~~g~~~g~i~i~~~~~~~~~~~~~~~~~~~~~~h~~~ 476 (809)
..+|.+.
T Consensus 323 -------------------------------------------------------------------------frg~~~s 329 (479)
T KOG0299|consen 323 -------------------------------------------------------------------------FRGGEGS 329 (479)
T ss_pred -------------------------------------------------------------------------eeCCCCC
Confidence 0256667
Q ss_pred EEEEEEcCCCCEEEEEeCcCeEEEEECCCCceeeeeecC-------------CCeEEEEEeeCCCEEEEEeCCCeEEEEE
Q 003579 477 VVGVACDSTNTLMISAGYHGDIKVWDFKGRDLKSRWEVG-------------CSLVKIVYHRVNGLLATVADDLVIRLFD 543 (809)
Q Consensus 477 v~~l~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~-------------~~i~~~~~s~~~~~la~~~~d~~I~v~d 543 (809)
+-|++|-.+ ..+++|+.+|.|.+|++.+.+++.+.... ..|++++..|...++|+|+.+|.|++|-
T Consensus 330 idcv~~In~-~HfvsGSdnG~IaLWs~~KKkplf~~~~AHgv~~~~~~~~~~~Witsla~i~~sdL~asGS~~G~vrLW~ 408 (479)
T KOG0299|consen 330 IDCVAFIND-EHFVSGSDNGSIALWSLLKKKPLFTSRLAHGVIPELDPVNGNFWITSLAVIPGSDLLASGSWSGCVRLWK 408 (479)
T ss_pred eeeEEEecc-cceeeccCCceEEEeeecccCceeEeeccccccCCccccccccceeeeEecccCceEEecCCCCceEEEE
Confidence 777777644 46788888888888888877777655321 2789999999999999999999999999
Q ss_pred cCCC----eEEEEEecCCCCeeeEEECCCCCEEEEE-eCCCeEEEE
Q 003579 544 VVAL----RMVRKFEGHTDRITDFCFSEDGKWLLSS-GMDGSLRIW 584 (809)
Q Consensus 544 ~~~~----~~~~~~~~h~~~I~~l~fspdg~~l~s~-s~D~~I~vw 584 (809)
+..+ +++..+. -.+-|++++|+++|++|++| +....+--|
T Consensus 409 i~~g~r~i~~l~~ls-~~GfVNsl~f~~sgk~ivagiGkEhRlGRW 453 (479)
T KOG0299|consen 409 IEDGLRAINLLYSLS-LVGFVNSLAFSNSGKRIVAGIGKEHRLGRW 453 (479)
T ss_pred ecCCccccceeeecc-cccEEEEEEEccCCCEEEEeccccccccee
Confidence 9877 3444444 56889999999999977665 444444334
No 97
>KOG2055 consensus WD40 repeat protein [General function prediction only]
Probab=99.96 E-value=6e-27 Score=229.54 Aligned_cols=284 Identities=18% Similarity=0.281 Sum_probs=241.2
Q ss_pred ccceEEEEEecCCCEEEEEcCCCcEEEEEeeCCCCCceeEEeccCCCCCCeeEEEecCCC-EEEEEECCCCEEEEEeeec
Q 003579 268 DNAIISLHFFANEPVLMSASADNSIKMWIFDTTDGDPRLLRFRSGHSAPPLCIRFYANGR-HILSAGQDRAFRLFSVIQD 346 (809)
Q Consensus 268 ~~~V~~l~~~~~~~~l~s~s~d~~i~vw~~~~~~~~~~~~~~~~~h~~~v~~i~~~~~~~-~l~s~~~dg~i~~wd~~~~ 346 (809)
.++|+++.|+|..++|++++.|+.+++|.++.... ..+..+.--..||.+.+|+|+|+ .+++++....+..||+.+.
T Consensus 213 ~~~I~sv~FHp~~plllvaG~d~~lrifqvDGk~N--~~lqS~~l~~fPi~~a~f~p~G~~~i~~s~rrky~ysyDle~a 290 (514)
T KOG2055|consen 213 HGGITSVQFHPTAPLLLVAGLDGTLRIFQVDGKVN--PKLQSIHLEKFPIQKAEFAPNGHSVIFTSGRRKYLYSYDLETA 290 (514)
T ss_pred cCCceEEEecCCCceEEEecCCCcEEEEEecCccC--hhheeeeeccCccceeeecCCCceEEEecccceEEEEeecccc
Confidence 46899999999999999999999999999987654 34555556678999999999998 8999999999999998655
Q ss_pred ccceecchhhHHHHHhhccchhhhhccCceeEEeeccccccccceeEEeecCCceEEEEEeeeeeecceeeecCCCC-CC
Q 003579 347 QQSRELSQRHVAKRARKLKMKEEELKLKPVIAFDCAEIRERDWCNVVTCHMDTAQAYVWRLQNFVLGEHILRPCPEN-PT 425 (809)
Q Consensus 347 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~-~~ 425 (809)
+..+.-. ..++ ..
T Consensus 291 k~~k~~~------------------------------------------------------------------~~g~e~~ 304 (514)
T KOG2055|consen 291 KVTKLKP------------------------------------------------------------------PYGVEEK 304 (514)
T ss_pred ccccccC------------------------------------------------------------------CCCcccc
Confidence 4322110 0011 24
Q ss_pred CeEEEEEcCCCCEEEEEeCCCcEEEEECCCCceeeeeeCcccccccCccccEEEEEEcCCCCEEEEEeCcCeEEEEECCC
Q 003579 426 AVKACTISACGNFAVLGTAGGWIERFNLQSGISRGSYLDMSERSNYAHNGEVVGVACDSTNTLMISAGYHGDIKVWDFKG 505 (809)
Q Consensus 426 ~v~~v~~s~~g~~l~~g~~~g~i~i~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~l~s~~~dg~i~iwd~~~ 505 (809)
.+....+|+|++++++.+..|.|.+....+++.+..+ .-.+.|.+++|+.+++.|++++.+|.|.+||++.
T Consensus 305 ~~e~FeVShd~~fia~~G~~G~I~lLhakT~eli~s~---------KieG~v~~~~fsSdsk~l~~~~~~GeV~v~nl~~ 375 (514)
T KOG2055|consen 305 SMERFEVSHDSNFIAIAGNNGHIHLLHAKTKELITSF---------KIEGVVSDFTFSSDSKELLASGGTGEVYVWNLRQ 375 (514)
T ss_pred hhheeEecCCCCeEEEcccCceEEeehhhhhhhhhee---------eeccEEeeEEEecCCcEEEEEcCCceEEEEecCC
Confidence 5677899999999999999999999999999999887 4678999999999999999999999999999999
Q ss_pred CceeeeeecCCCe--EEEEEeeCCCEEEEEeCCCeEEEEEcCC------CeEEEEEecCCCCeeeEEECCCCCEEEEEe-
Q 003579 506 RDLKSRWEVGCSL--VKIVYHRVNGLLATVADDLVIRLFDVVA------LRMVRKFEGHTDRITDFCFSEDGKWLLSSG- 576 (809)
Q Consensus 506 ~~~~~~~~~~~~i--~~~~~s~~~~~la~~~~d~~I~v~d~~~------~~~~~~~~~h~~~I~~l~fspdg~~l~s~s- 576 (809)
..+++++...+.+ +++|.++++.++|+|++.|.|.|||.++ .+++..+..-...|++|+|+||++.||.+|
T Consensus 376 ~~~~~rf~D~G~v~gts~~~S~ng~ylA~GS~~GiVNIYd~~s~~~s~~PkPik~~dNLtt~Itsl~Fn~d~qiLAiaS~ 455 (514)
T KOG2055|consen 376 NSCLHRFVDDGSVHGTSLCISLNGSYLATGSDSGIVNIYDGNSCFASTNPKPIKTVDNLTTAITSLQFNHDAQILAIASR 455 (514)
T ss_pred cceEEEEeecCccceeeeeecCCCceEEeccCcceEEEeccchhhccCCCCchhhhhhhheeeeeeeeCcchhhhhhhhh
Confidence 9999998776544 5677789999999999999999999654 466777777788999999999999998777
Q ss_pred -CCCeEEEEEcCCccEEEEeeeCcc----eEEEEEcCCCCeEEEEEeCCCeEEEeecC
Q 003579 577 -MDGSLRIWDVILARQIDAIHVDVS----ITALSLSPNMDVLATAHVDQNGVYLWVNR 629 (809)
Q Consensus 577 -~D~~I~vwd~~~~~~i~~~~~~~~----v~~l~~spdg~~lat~~~d~~~i~lW~~~ 629 (809)
.+..+|+-.+++......+..... |+||+|||.|.|||.|..+++ |.||.+.
T Consensus 456 ~~knalrLVHvPS~TVFsNfP~~n~~vg~vtc~aFSP~sG~lAvGNe~gr-v~l~kL~ 512 (514)
T KOG2055|consen 456 VKKNALRLVHVPSCTVFSNFPTSNTKVGHVTCMAFSPNSGYLAVGNEAGR-VHLFKLH 512 (514)
T ss_pred ccccceEEEeccceeeeccCCCCCCcccceEEEEecCCCceEEeecCCCc-eeeEeec
Confidence 577899999999888887765442 999999999999999999995 9999875
No 98
>KOG0308 consensus Conserved WD40 repeat-containing protein [Function unknown]
Probab=99.95 E-value=1.5e-27 Score=242.94 Aligned_cols=352 Identities=17% Similarity=0.253 Sum_probs=272.2
Q ss_pred eCCEEEEEeCCCcEEEEEcCCCccc-cc-eeeeEEcCCccccEEEEeCCCCCCEEEEEeCCCeEEEEeCCCC--ceEEEE
Q 003579 102 FGEHILSIDIDGNMFIWAFKGIEEN-LA-PVGHVKLDDKFTPTCIMHPDTYLNKVIVGSQEGSLQLWNISTK--KKLYEF 177 (809)
Q Consensus 102 ~g~~l~s~~~dg~i~vWd~~~~~~~-~~-~~~~~~~~~~~~~~~~~~p~~~~~~l~~~~~dg~i~lwd~~~~--~~~~~~ 177 (809)
.+++|+|++.||.|++|++...... .. .+..++.|..++..++..-.+ +.++++|.|-+|.+|+...+ -++.++
T Consensus 36 ~~ryLfTgGRDg~i~~W~~~~d~~~~s~~~~asme~HsDWVNDiiL~~~~--~tlIS~SsDtTVK~W~~~~~~~~c~sti 113 (735)
T KOG0308|consen 36 NGRYLFTGGRDGIIRLWSVTQDSNEPSTPYIASMEHHSDWVNDIILCGNG--KTLISASSDTTVKVWNAHKDNTFCMSTI 113 (735)
T ss_pred CCceEEecCCCceEEEeccccccCCcccchhhhhhhhHhHHhhHHhhcCC--CceEEecCCceEEEeecccCcchhHhhh
Confidence 4788999999999999998754331 11 256677788877777766666 68999999999999999877 577788
Q ss_pred cCCCCCEEEEEE-cCCCCEEEEEeCCCeEEEEEeeCC--eEEEEEe--------ccCCCcEEEEEEecCCCCEEEEEcCC
Q 003579 178 KGWGSSISSCVS-SPALDVVAVGCSDGKIHVHNVRYD--EELVTFT--------HSMRGAVTALAFSSDGQPLLASGASS 246 (809)
Q Consensus 178 ~~~~~~I~~l~~-sp~~~~la~g~~dg~i~iwd~~~~--~~~~~~~--------~~~~~~V~~l~fs~dg~~~lasg~~d 246 (809)
..|...|.|+++ .++..++|+|+-|+.|.+||+.++ +.+.++. .++..+|++++-.+.|. ++++|+..
T Consensus 114 r~H~DYVkcla~~ak~~~lvaSgGLD~~IflWDin~~~~~l~~s~n~~t~~sl~sG~k~siYSLA~N~t~t-~ivsGgte 192 (735)
T KOG0308|consen 114 RTHKDYVKCLAYIAKNNELVASGGLDRKIFLWDINTGTATLVASFNNVTVNSLGSGPKDSIYSLAMNQTGT-IIVSGGTE 192 (735)
T ss_pred hcccchheeeeecccCceeEEecCCCccEEEEEccCcchhhhhhccccccccCCCCCccceeeeecCCcce-EEEecCcc
Confidence 999999999999 888999999999999999999987 3333332 24577999999999997 99999999
Q ss_pred CcEEEEECCCceeeeeeecccccceEEEEEecCCCEEEEEcCCCcEEEEEeeCCCCCceeEEeccCCCCCCeeEEEecCC
Q 003579 247 GVISIWNLEKRRLQSVIREAHDNAIISLHFFANEPVLMSASADNSIKMWIFDTTDGDPRLLRFRSGHSAPPLCIRFYANG 326 (809)
Q Consensus 247 g~I~iwdl~~~~~~~~~~~~h~~~V~~l~~~~~~~~l~s~s~d~~i~vw~~~~~~~~~~~~~~~~~h~~~v~~i~~~~~~ 326 (809)
+.|++||.++++.+..++ +|+..|..+..++||..++++|.||+|++||+... +++.++..|...|.++..+|+-
T Consensus 193 k~lr~wDprt~~kimkLr-GHTdNVr~ll~~dDGt~~ls~sSDgtIrlWdLgqQ----rCl~T~~vH~e~VWaL~~~~sf 267 (735)
T KOG0308|consen 193 KDLRLWDPRTCKKIMKLR-GHTDNVRVLLVNDDGTRLLSASSDGTIRLWDLGQQ----RCLATYIVHKEGVWALQSSPSF 267 (735)
T ss_pred cceEEeccccccceeeee-ccccceEEEEEcCCCCeEeecCCCceEEeeecccc----ceeeeEEeccCceEEEeeCCCc
Confidence 999999999999999999 99999999999999999999999999999998766 7888899999999999999999
Q ss_pred CEEEEEECCCCEEEEEeeecccceecchhhHHHHHhhccchhhhhccCceeEEeeccccccccceeEEeecCCceEEEEE
Q 003579 327 RHILSAGQDRAFRLFSVIQDQQSRELSQRHVAKRARKLKMKEEELKLKPVIAFDCAEIRERDWCNVVTCHMDTAQAYVWR 406 (809)
Q Consensus 327 ~~l~s~~~dg~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~ 406 (809)
.++++|+.||.|..-|+++......+-.
T Consensus 268 ~~vYsG~rd~~i~~Tdl~n~~~~tlick---------------------------------------------------- 295 (735)
T KOG0308|consen 268 THVYSGGRDGNIYRTDLRNPAKSTLICK---------------------------------------------------- 295 (735)
T ss_pred ceEEecCCCCcEEecccCCchhheEeec----------------------------------------------------
Confidence 9999999999999988876522111100
Q ss_pred eeeeeecceeeecCCCCCCCeEEEEEcCCCCEEEEEeCCCcEEEEECCCCceeeeeeCcccccccCccccEEEEEEcCCC
Q 003579 407 LQNFVLGEHILRPCPENPTAVKACTISACGNFAVLGTAGGWIERFNLQSGISRGSYLDMSERSNYAHNGEVVGVACDSTN 486 (809)
Q Consensus 407 ~~~~~~~~~~~~~~~~~~~~v~~v~~s~~g~~l~~g~~~g~i~i~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~ 486 (809)
...++..+......+-+-+++.|+.|..|...-.. ++++.+
T Consensus 296 ----------------~daPv~~l~~~~~~~~~WvtTtds~I~rW~~~~~~-----------------------~l~~s~ 336 (735)
T KOG0308|consen 296 ----------------EDAPVLKLHLHEHDNSVWVTTTDSSIKRWKLEPDI-----------------------ALSVSG 336 (735)
T ss_pred ----------------CCCchhhhhhccccCCceeeeccccceecCCcccc-----------------------ccccCC
Confidence 11344444455444445777888888888754321 223333
Q ss_pred CEEEEEeCcCeEEEEECCCCceeeeeecCCCeEEEEEeeCCCEEEEEeCCCeEEEEEcCCCeEEEEEe
Q 003579 487 TLMISAGYHGDIKVWDFKGRDLKSRWEVGCSLVKIVYHRVNGLLATVADDLVIRLFDVVALRMVRKFE 554 (809)
Q Consensus 487 ~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~i~~~~~s~~~~~la~~~~d~~I~v~d~~~~~~~~~~~ 554 (809)
++.. -+.|......+... .+-..+.++.+|...++-.|.+.+++-...|.+.+||+-..+.+..|.
T Consensus 337 ~~~~-~~T~~~~~~~~~~~-tp~~vi~Gg~ai~k~~mL~dkRhVlTkDa~gnv~lwDIl~~~~~~d~g 402 (735)
T KOG0308|consen 337 DLDF-FSTDSNNHSCDLTN-TPDSVIPGGAAIKKHAMLNDKRHVLTKDAKGNVALWDILACVKVEDFG 402 (735)
T ss_pred CCCc-ccccCCCccccccC-CCceeccCchhhhhhhhhcCcceEeeecCCCCEEEEEeeeeeehhhcc
Confidence 3332 22223333333211 334445566777777888889999999999999999998777766654
No 99
>KOG0300 consensus WD40 repeat-containing protein [Function unknown]
Probab=99.95 E-value=7.9e-27 Score=217.43 Aligned_cols=307 Identities=18% Similarity=0.363 Sum_probs=259.9
Q ss_pred CEEEEEeCCCeEEEEeCCCCceEEEEcCCCCCEEEEEEcCCCCEEEEEeCCCeEEEEEeeCCeEEEEEeccCCCcEEEEE
Q 003579 152 NKVIVGSQEGSLQLWNISTKKKLYEFKGWGSSISSCVSSPALDVVAVGCSDGKIHVHNVRYDEELVTFTHSMRGAVTALA 231 (809)
Q Consensus 152 ~~l~~~~~dg~i~lwd~~~~~~~~~~~~~~~~I~~l~~sp~~~~la~g~~dg~i~iwd~~~~~~~~~~~~~~~~~V~~l~ 231 (809)
.+|++...++++. .++++.+.||...|..++.......+.+++.|.+.+||.++++.++.++.+| .+.|.++.
T Consensus 125 srivssFk~~t~~------~~lvre~~GHkDGiW~Vaa~~tqpi~gtASADhTA~iWs~Esg~CL~~Y~GH-~GSVNsik 197 (481)
T KOG0300|consen 125 SRIVSSFKDGTVK------FRLVRELEGHKDGIWHVAADSTQPICGTASADHTARIWSLESGACLATYTGH-TGSVNSIK 197 (481)
T ss_pred chheeeecCCcee------EeehhhhcccccceeeehhhcCCcceeecccccceeEEeeccccceeeeccc-ccceeeEE
Confidence 4577777777633 3566778999999999998887789999999999999999999999999887 89999999
Q ss_pred EecCCCCEEEEEcCCCcEEEEECC------C------------------------------c----eeeeeeecccccce
Q 003579 232 FSSDGQPLLASGASSGVISIWNLE------K------------------------------R----RLQSVIREAHDNAI 271 (809)
Q Consensus 232 fs~dg~~~lasg~~dg~I~iwdl~------~------------------------------~----~~~~~~~~~h~~~V 271 (809)
|++.+. ++++++.|++-.||... . + .++..+. +|.+.|
T Consensus 198 fh~s~~-L~lTaSGD~taHIW~~av~~~vP~~~a~~~hSsEeE~e~sDe~~~d~d~~~~sD~~tiRvPl~~lt-gH~~vV 275 (481)
T KOG0300|consen 198 FHNSGL-LLLTASGDETAHIWKAAVNWEVPSNNAPSDHSSEEEEEHSDEHNRDTDSSEKSDGHTIRVPLMRLT-GHRAVV 275 (481)
T ss_pred eccccc-eEEEccCCcchHHHHHhhcCcCCCCCCCCCCCchhhhhcccccccccccccccCCceeeeeeeeee-ccccce
Confidence 999998 99999999999999621 0 0 1233344 799999
Q ss_pred EEEEEecCCCEEEEEcCCCcEEEEEeeCCCCCceeEEeccCCCCCCeeEEEecCCCEEEEEECCCCEEEEEeeeccccee
Q 003579 272 ISLHFFANEPVLMSASADNSIKMWIFDTTDGDPRLLRFRSGHSAPPLCIRFYANGRHILSAGQDRAFRLFSVIQDQQSRE 351 (809)
Q Consensus 272 ~~l~~~~~~~~l~s~s~d~~i~vw~~~~~~~~~~~~~~~~~h~~~v~~i~~~~~~~~l~s~~~dg~i~~wd~~~~~~~~~ 351 (809)
.+..|...+..+++++.|.+..+||++++ .++..+.||....+.++-+|..+++++++.|.+.++||++..
T Consensus 276 ~a~dWL~gg~Q~vTaSWDRTAnlwDVEtg----e~v~~LtGHd~ELtHcstHptQrLVvTsSrDtTFRLWDFRea----- 346 (481)
T KOG0300|consen 276 SACDWLAGGQQMVTASWDRTANLWDVETG----EVVNILTGHDSELTHCSTHPTQRLVVTSSRDTTFRLWDFREA----- 346 (481)
T ss_pred EehhhhcCcceeeeeeccccceeeeeccC----ceeccccCcchhccccccCCcceEEEEeccCceeEeccchhh-----
Confidence 99999999999999999999999999887 678889999999999999999999999999999999997521
Q ss_pred cchhhHHHHHhhccchhhhhccCceeEEeeccccccccceeEEeecCCceEEEEEeeeeeecceeeecCCCCCCCeEEEE
Q 003579 352 LSQRHVAKRARKLKMKEEELKLKPVIAFDCAEIRERDWCNVVTCHMDTAQAYVWRLQNFVLGEHILRPCPENPTAVKACT 431 (809)
Q Consensus 352 ~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~v~~v~ 431 (809)
|.+++
T Consensus 347 ---------------------------------------------------------------------------I~sV~ 351 (481)
T KOG0300|consen 347 ---------------------------------------------------------------------------IQSVA 351 (481)
T ss_pred ---------------------------------------------------------------------------cceee
Confidence 11111
Q ss_pred EcCCCCEEEEEeCCCcEEEEECCCCceeeeeeCcccccccCccccEEEEEEcCCCCEEEEEeCcCeEEEEECCCC-ceee
Q 003579 432 ISACGNFAVLGTAGGWIERFNLQSGISRGSYLDMSERSNYAHNGEVVGVACDSTNTLMISAGYHGDIKVWDFKGR-DLKS 510 (809)
Q Consensus 432 ~s~~g~~l~~g~~~g~i~i~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~l~s~~~dg~i~iwd~~~~-~~~~ 510 (809)
+ | .+|...|+++.|.-+. .+++++.|.+|++||+++. .++.
T Consensus 352 V-----------------------------F--------QGHtdtVTS~vF~~dd-~vVSgSDDrTvKvWdLrNMRsplA 393 (481)
T KOG0300|consen 352 V-----------------------------F--------QGHTDTVTSVVFNTDD-RVVSGSDDRTVKVWDLRNMRSPLA 393 (481)
T ss_pred e-----------------------------e--------cccccceeEEEEecCC-ceeecCCCceEEEeeeccccCcce
Confidence 1 1 3899999999998765 5889999999999999864 6788
Q ss_pred eeecCCCeEEEEEeeCCCEEEEEeCCCeEEEEEcCCCeEEE----EEecCCCCeeeEEECCCC--CEEEEEeCCCeEEEE
Q 003579 511 RWEVGCSLVKIVYHRVNGLLATVADDLVIRLFDVVALRMVR----KFEGHTDRITDFCFSEDG--KWLLSSGMDGSLRIW 584 (809)
Q Consensus 511 ~~~~~~~i~~~~~s~~~~~la~~~~d~~I~v~d~~~~~~~~----~~~~h~~~I~~l~fspdg--~~l~s~s~D~~I~vw 584 (809)
++...++++.++.+..+..+|.-.++..|++||+...++.+ .-+||...|++++|..+- .-|++++.|..+.=|
T Consensus 394 TIRtdS~~NRvavs~g~~iIAiPhDNRqvRlfDlnG~RlaRlPrtsRqgHrRMV~c~AW~eehp~cnLftcGFDR~v~gW 473 (481)
T KOG0300|consen 394 TIRTDSPANRVAVSKGHPIIAIPHDNRQVRLFDLNGNRLARLPRTSRQGHRRMVTCCAWLEEHPACNLFTCGFDRMVAGW 473 (481)
T ss_pred eeecCCccceeEeecCCceEEeccCCceEEEEecCCCccccCCcccccccceeeeeeeccccCcccccccccccceeeee
Confidence 99999999999999999999999999999999998765433 345899999999998754 347899999999999
Q ss_pred EcCCc
Q 003579 585 DVILA 589 (809)
Q Consensus 585 d~~~~ 589 (809)
.+...
T Consensus 474 ~in~p 478 (481)
T KOG0300|consen 474 KINTP 478 (481)
T ss_pred Eeccc
Confidence 98653
No 100
>KOG0277 consensus Peroxisomal targeting signal type 2 receptor [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.95 E-value=7.2e-27 Score=211.64 Aligned_cols=259 Identities=15% Similarity=0.271 Sum_probs=215.3
Q ss_pred eEEEEEC--CeeEEEE--ccccccEEEEEEe---CCEEEEEeCCCcEEEEEcCCCccccceeeeEEcCCccccEEEEeCC
Q 003579 76 HIAVVKR--AHQVATW--SRHSAKVNLLLLF---GEHILSIDIDGNMFIWAFKGIEENLAPVGHVKLDDKFTPTCIMHPD 148 (809)
Q Consensus 76 ~i~vw~~--~~~~~~~--~~h~~~V~~l~~~---g~~l~s~~~dg~i~vWd~~~~~~~~~~~~~~~~~~~~~~~~~~~p~ 148 (809)
.+.|-+. ++.+.+. ..-.+.+..+++. .+.+++++.||++++||+..... |+..++-|...+.++-+++.
T Consensus 39 ~L~ile~~~~~gi~e~~s~d~~D~LfdV~Wse~~e~~~~~a~GDGSLrl~d~~~~s~---Pi~~~kEH~~EV~Svdwn~~ 115 (311)
T KOG0277|consen 39 RLFILEVTDPKGIQECQSYDTEDGLFDVAWSENHENQVIAASGDGSLRLFDLTMPSK---PIHKFKEHKREVYSVDWNTV 115 (311)
T ss_pred eEEEEecCCCCCeEEEEeeecccceeEeeecCCCcceEEEEecCceEEEeccCCCCc---chhHHHhhhhheEEeccccc
Confidence 4777765 3334442 2345678888884 67889999999999999654433 56777778888888888876
Q ss_pred CCCCEEEEEeCCCeEEEEeCCCCceEEEEcCCCCCEEEEEEcCC-CCEEEEEeCCCeEEEEEeeCCeEEEEEeccCCCcE
Q 003579 149 TYLNKVIVGSQEGSLQLWNISTKKKLYEFKGWGSSISSCVSSPA-LDVVAVGCSDGKIHVHNVRYDEELVTFTHSMRGAV 227 (809)
Q Consensus 149 ~~~~~l~~~~~dg~i~lwd~~~~~~~~~~~~~~~~I~~l~~sp~-~~~la~g~~dg~i~iwd~~~~~~~~~~~~~~~~~V 227 (809)
.. ..+++++.|++|++|+...++-+.+|.+|...|...+|+|. .+++++++.||++++||++.....+.+..| ...|
T Consensus 116 ~r-~~~ltsSWD~TiKLW~~~r~~Sv~Tf~gh~~~Iy~a~~sp~~~nlfas~Sgd~~l~lwdvr~~gk~~~i~ah-~~Ei 193 (311)
T KOG0277|consen 116 RR-RIFLTSSWDGTIKLWDPNRPNSVQTFNGHNSCIYQAAFSPHIPNLFASASGDGTLRLWDVRSPGKFMSIEAH-NSEI 193 (311)
T ss_pred cc-eeEEeeccCCceEeecCCCCcceEeecCCccEEEEEecCCCCCCeEEEccCCceEEEEEecCCCceeEEEec-ccee
Confidence 64 56777899999999999999999999999999999999994 689999999999999999876555557766 6899
Q ss_pred EEEEEecCCCCEEEEEcCCCcEEEEECCCc-eeeeeeecccccceEEEEEecCC-CEEEEEcCCCcEEEEEeeCCCCCce
Q 003579 228 TALAFSSDGQPLLASGASSGVISIWNLEKR-RLQSVIREAHDNAIISLHFFANE-PVLMSASADNSIKMWIFDTTDGDPR 305 (809)
Q Consensus 228 ~~l~fs~dg~~~lasg~~dg~I~iwdl~~~-~~~~~~~~~h~~~V~~l~~~~~~-~~l~s~s~d~~i~vw~~~~~~~~~~ 305 (809)
.|+.|+.-...+|+||+.|+.|+.||+++- ..+..+. +|.-.|+.++|+|-. .+|++++.|-++++|+...++ .
T Consensus 194 l~cdw~ky~~~vl~Tg~vd~~vr~wDir~~r~pl~eL~-gh~~AVRkvk~Sph~~~lLaSasYDmT~riw~~~~~d---s 269 (311)
T KOG0277|consen 194 LCCDWSKYNHNVLATGGVDNLVRGWDIRNLRTPLFELN-GHGLAVRKVKFSPHHASLLASASYDMTVRIWDPERQD---S 269 (311)
T ss_pred EeecccccCCcEEEecCCCceEEEEehhhccccceeec-CCceEEEEEecCcchhhHhhhccccceEEecccccch---h
Confidence 999999988889999999999999999886 4566665 999999999999965 489999999999999987665 3
Q ss_pred eEEeccCCCCCCeeEEEec-CCCEEEEEECCCCEEEEEe
Q 003579 306 LLRFRSGHSAPPLCIRFYA-NGRHILSAGQDRAFRLFSV 343 (809)
Q Consensus 306 ~~~~~~~h~~~v~~i~~~~-~~~~l~s~~~dg~i~~wd~ 343 (809)
.+.....|+..+..+.|++ ++.++++++.|+.+.+|+.
T Consensus 270 ~~e~~~~HtEFv~g~Dws~~~~~~vAs~gWDe~l~Vw~p 308 (311)
T KOG0277|consen 270 AIETVDHHTEFVCGLDWSLFDPGQVASTGWDELLYVWNP 308 (311)
T ss_pred hhhhhhccceEEeccccccccCceeeecccccceeeecc
Confidence 4555668999999999998 7889999999999999983
No 101
>KOG0289 consensus mRNA splicing factor [General function prediction only]
Probab=99.95 E-value=3.3e-26 Score=222.48 Aligned_cols=276 Identities=17% Similarity=0.305 Sum_probs=234.9
Q ss_pred EeCCCCCCEEEEEeCCCeEEEEeCCCCceEEEEcCCCCCEEEEEEcCCCCEEEEEeCCCeEEEEEeeCCeEEEEEeccCC
Q 003579 145 MHPDTYLNKVIVGSQEGSLQLWNISTKKKLYEFKGWGSSISSCVSSPALDVVAVGCSDGKIHVHNVRYDEELVTFTHSMR 224 (809)
Q Consensus 145 ~~p~~~~~~l~~~~~dg~i~lwd~~~~~~~~~~~~~~~~I~~l~~sp~~~~la~g~~dg~i~iwd~~~~~~~~~~~~~~~ 224 (809)
..|.. +++++|+.|..+.++|..+++.+..|+||...|+.+.++|+.+.+++++.|-.|+||.............| .
T Consensus 227 ~~~s~--~~ilTGG~d~~av~~d~~s~q~l~~~~Gh~kki~~v~~~~~~~~v~~aSad~~i~vws~~~~s~~~~~~~h-~ 303 (506)
T KOG0289|consen 227 IIPSS--SKILTGGEDKTAVLFDKPSNQILATLKGHTKKITSVKFHKDLDTVITASADEIIRVWSVPLSSEPTSSRPH-E 303 (506)
T ss_pred ecCCC--CcceecCCCCceEEEecchhhhhhhccCcceEEEEEEeccchhheeecCCcceEEeeccccccCccccccc-c
Confidence 44554 78999999999999999999999999999999999999999999999999999999999877766665554 8
Q ss_pred CcEEEEEEecCCCCEEEEEcCCCcEEEEECCCceeeeeeecc-cccceEEEEEecCCCEEEEEcCCCcEEEEEeeCCCCC
Q 003579 225 GAVTALAFSSDGQPLLASGASSGVISIWNLEKRRLQSVIREA-HDNAIISLHFFANEPVLMSASADNSIKMWIFDTTDGD 303 (809)
Q Consensus 225 ~~V~~l~fs~dg~~~lasg~~dg~I~iwdl~~~~~~~~~~~~-h~~~V~~l~~~~~~~~l~s~s~d~~i~vw~~~~~~~~ 303 (809)
++|+.+..+|.|. +|++++.||...+.|++++..+...... ..-.+++.+|+|||.++.+|..|+.+++||+..++
T Consensus 304 ~~V~~ls~h~tge-YllsAs~d~~w~Fsd~~~g~~lt~vs~~~s~v~~ts~~fHpDgLifgtgt~d~~vkiwdlks~~-- 380 (506)
T KOG0289|consen 304 EPVTGLSLHPTGE-YLLSASNDGTWAFSDISSGSQLTVVSDETSDVEYTSAAFHPDGLIFGTGTPDGVVKIWDLKSQT-- 380 (506)
T ss_pred ccceeeeeccCCc-EEEEecCCceEEEEEccCCcEEEEEeeccccceeEEeeEcCCceEEeccCCCceEEEEEcCCcc--
Confidence 9999999999999 8889999999999999999988877621 22458999999999999999999999999987764
Q ss_pred ceeEEeccCCCCCCeeEEEecCCCEEEEEECCCCEEEEEeeecccceecchhhHHHHHhhccchhhhhccCceeEEeecc
Q 003579 304 PRLLRFRSGHSAPPLCIRFYANGRHILSAGQDRAFRLFSVIQDQQSRELSQRHVAKRARKLKMKEEELKLKPVIAFDCAE 383 (809)
Q Consensus 304 ~~~~~~~~~h~~~v~~i~~~~~~~~l~s~~~dg~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~ 383 (809)
.+..+.+|.++|..++|+.+|-+|+++..|+.|++||++.....+.+..
T Consensus 381 --~~a~Fpght~~vk~i~FsENGY~Lat~add~~V~lwDLRKl~n~kt~~l----------------------------- 429 (506)
T KOG0289|consen 381 --NVAKFPGHTGPVKAISFSENGYWLATAADDGSVKLWDLRKLKNFKTIQL----------------------------- 429 (506)
T ss_pred --ccccCCCCCCceeEEEeccCceEEEEEecCCeEEEEEehhhcccceeec-----------------------------
Confidence 4666789999999999999999999999999999999987654443321
Q ss_pred ccccccceeEEeecCCceEEEEEeeeeeecceeeecCCCCCCCeEEEEEcCCCCEEEEEeCCCcEEEEECCCC--ceeee
Q 003579 384 IRERDWCNVVTCHMDTAQAYVWRLQNFVLGEHILRPCPENPTAVKACTISACGNFAVLGTAGGWIERFNLQSG--ISRGS 461 (809)
Q Consensus 384 ~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~v~~v~~s~~g~~l~~g~~~g~i~i~~~~~~--~~~~~ 461 (809)
.....+.++.|.+.|.++++++++=.|+++.-.+. .....
T Consensus 430 --------------------------------------~~~~~v~s~~fD~SGt~L~~~g~~l~Vy~~~k~~k~W~~~~~ 471 (506)
T KOG0289|consen 430 --------------------------------------DEKKEVNSLSFDQSGTYLGIAGSDLQVYICKKKTKSWTEIKE 471 (506)
T ss_pred --------------------------------------cccccceeEEEcCCCCeEEeecceeEEEEEecccccceeeeh
Confidence 11247899999999999999987777777764433 23333
Q ss_pred eeCcccccccCccccEEEEEEcCCCCEEEEEeCcCeEEEEEC
Q 003579 462 YLDMSERSNYAHNGEVVGVACDSTNTLMISAGYHGDIKVWDF 503 (809)
Q Consensus 462 ~~~~~~~~~~~h~~~v~~l~~~~~~~~l~s~~~dg~i~iwd~ 503 (809)
+ ..|.+..+++.|....+++++++.|..++++.+
T Consensus 472 ~--------~~~sg~st~v~Fg~~aq~l~s~smd~~l~~~a~ 505 (506)
T KOG0289|consen 472 L--------ADHSGLSTGVRFGEHAQYLASTSMDAILRLYAL 505 (506)
T ss_pred h--------hhcccccceeeecccceEEeeccchhheEEeec
Confidence 3 378889999999999999999999999988764
No 102
>KOG2096 consensus WD40 repeat protein [General function prediction only]
Probab=99.95 E-value=4.7e-26 Score=212.73 Aligned_cols=292 Identities=20% Similarity=0.265 Sum_probs=216.4
Q ss_pred cCCCcEEEEEEecCCCCEEEEEcCCCcEEEEECCCcee--eeeee-cccccceEEEEEecCCC-EEEEEcCCCcEEEEEe
Q 003579 222 SMRGAVTALAFSSDGQPLLASGASSGVISIWNLEKRRL--QSVIR-EAHDNAIISLHFFANEP-VLMSASADNSIKMWIF 297 (809)
Q Consensus 222 ~~~~~V~~l~fs~dg~~~lasg~~dg~I~iwdl~~~~~--~~~~~-~~h~~~V~~l~~~~~~~-~l~s~s~d~~i~vw~~ 297 (809)
+|.+.|++++|+.||+ .||+++.|+.|++|+++.-.. .+.++ .-..+-.+.+.|.||-+ .++++-..+++++|.+
T Consensus 84 gH~~~vt~~~FsSdGK-~lat~~~Dr~Ir~w~~~DF~~~eHr~~R~nve~dhpT~V~FapDc~s~vv~~~~g~~l~vyk~ 162 (420)
T KOG2096|consen 84 GHKKEVTDVAFSSDGK-KLATISGDRSIRLWDVRDFENKEHRCIRQNVEYDHPTRVVFAPDCKSVVVSVKRGNKLCVYKL 162 (420)
T ss_pred ccCCceeeeEEcCCCc-eeEEEeCCceEEEEecchhhhhhhhHhhccccCCCceEEEECCCcceEEEEEccCCEEEEEEe
Confidence 3488999999999999 999999999999999876421 11111 01123568899999987 4555566778999987
Q ss_pred eCCCCCc--------eeEEeccCCCCCCeeEEEecCCCEEEEEECCCCEEEEEeeecccceecchhhHHHHHhhccchhh
Q 003579 298 DTTDGDP--------RLLRFRSGHSAPPLCIRFYANGRHILSAGQDRAFRLFSVIQDQQSRELSQRHVAKRARKLKMKEE 369 (809)
Q Consensus 298 ~~~~~~~--------~~~~~~~~h~~~v~~i~~~~~~~~l~s~~~dg~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~ 369 (809)
...+... ..+.....|..++..+-...++++|++++.|..|.+|++. ++....+.
T Consensus 163 ~K~~dG~~~~~~v~~D~~~f~~kh~v~~i~iGiA~~~k~imsas~dt~i~lw~lk-Gq~L~~id---------------- 225 (420)
T KOG2096|consen 163 VKKTDGSGSHHFVHIDNLEFERKHQVDIINIGIAGNAKYIMSASLDTKICLWDLK-GQLLQSID---------------- 225 (420)
T ss_pred eecccCCCCcccccccccccchhcccceEEEeecCCceEEEEecCCCcEEEEecC-Cceeeeec----------------
Confidence 6543211 1122334677788888888899999999999999999987 43333321
Q ss_pred hhccCceeEEeeccccccccceeEEeecCCceEEEEEeeeeeecceeeecCCCCCCCeEEEEEcCCCCEEEEEeCCCcEE
Q 003579 370 ELKLKPVIAFDCAEIRERDWCNVVTCHMDTAQAYVWRLQNFVLGEHILRPCPENPTAVKACTISACGNFAVLGTAGGWIE 449 (809)
Q Consensus 370 ~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~v~~v~~s~~g~~l~~g~~~g~i~ 449 (809)
.+...-+..++||||+|+++++-.-.|.
T Consensus 226 ----------------------------------------------------tnq~~n~~aavSP~GRFia~~gFTpDVk 253 (420)
T KOG2096|consen 226 ----------------------------------------------------TNQSSNYDAAVSPDGRFIAVSGFTPDVK 253 (420)
T ss_pred ----------------------------------------------------cccccccceeeCCCCcEEEEecCCCCce
Confidence 2224556778999999999999999999
Q ss_pred EEECCCCceeeeeeCcccccccCccccEEEEEEcCCCCEEEEEeCcCeEEEEECCCC-------ceeeee-----ecCCC
Q 003579 450 RFNLQSGISRGSYLDMSERSNYAHNGEVVGVACDSTNTLMISAGYHGDIKVWDFKGR-------DLKSRW-----EVGCS 517 (809)
Q Consensus 450 i~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~l~s~~~dg~i~iwd~~~~-------~~~~~~-----~~~~~ 517 (809)
+|..--++.-..........+.+|...|..++|+++.+.+++.+.||++++||++-. +.++.. ...+.
T Consensus 254 VwE~~f~kdG~fqev~rvf~LkGH~saV~~~aFsn~S~r~vtvSkDG~wriwdtdVrY~~~qDpk~Lk~g~~pl~aag~~ 333 (420)
T KOG2096|consen 254 VWEPIFTKDGTFQEVKRVFSLKGHQSAVLAAAFSNSSTRAVTVSKDGKWRIWDTDVRYEAGQDPKILKEGSAPLHAAGSE 333 (420)
T ss_pred EEEEEeccCcchhhhhhhheeccchhheeeeeeCCCcceeEEEecCCcEEEeeccceEecCCCchHhhcCCcchhhcCCC
Confidence 998633221111011111234699999999999999999999999999999997521 222222 11245
Q ss_pred eEEEEEeeCCCEEEEEeCCCeEEEEEcCCCeEEEEEe-cCCCCeeeEEECCCCCEEEEEeCCCeEEEEE
Q 003579 518 LVKIVYHRVNGLLATVADDLVIRLFDVVALRMVRKFE-GHTDRITDFCFSEDGKWLLSSGMDGSLRIWD 585 (809)
Q Consensus 518 i~~~~~s~~~~~la~~~~d~~I~v~d~~~~~~~~~~~-~h~~~I~~l~fspdg~~l~s~s~D~~I~vwd 585 (809)
...+.++|+|+.||++. ...+++|..++++...+++ .|...|++++|+++|++++|++ |..+++..
T Consensus 334 p~RL~lsP~g~~lA~s~-gs~l~~~~se~g~~~~~~e~~h~~~Is~is~~~~g~~~atcG-dr~vrv~~ 400 (420)
T KOG2096|consen 334 PVRLELSPSGDSLAVSF-GSDLKVFASEDGKDYPELEDIHSTTISSISYSSDGKYIATCG-DRYVRVIR 400 (420)
T ss_pred ceEEEeCCCCcEEEeec-CCceEEEEcccCccchhHHHhhcCceeeEEecCCCcEEeeec-ceeeeeec
Confidence 56899999999998775 4579999999998777765 4899999999999999999998 78888876
No 103
>KOG0647 consensus mRNA export protein (contains WD40 repeats) [RNA processing and modification]
Probab=99.95 E-value=4.6e-26 Score=211.71 Aligned_cols=277 Identities=19% Similarity=0.312 Sum_probs=221.7
Q ss_pred EEeccCCCcEEEEEEecCCCCEEEEEcCCCcEEEEECCC-ceeeeeeecccccceEEEEEecCCCEEEEEcCCCcEEEEE
Q 003579 218 TFTHSMRGAVTALAFSSDGQPLLASGASSGVISIWNLEK-RRLQSVIREAHDNAIISLHFFANEPVLMSASADNSIKMWI 296 (809)
Q Consensus 218 ~~~~~~~~~V~~l~fs~dg~~~lasg~~dg~I~iwdl~~-~~~~~~~~~~h~~~V~~l~~~~~~~~l~s~s~d~~i~vw~ 296 (809)
.+.....+.|.+|+|||....+++.|+.||+||+|+++. |..+......|.++|.+++|+.||..+++|+.|+.+++||
T Consensus 21 ev~~pP~DsIS~l~FSP~~~~~~~A~SWD~tVR~wevq~~g~~~~ka~~~~~~PvL~v~WsddgskVf~g~~Dk~~k~wD 100 (347)
T KOG0647|consen 21 EVPNPPEDSISALAFSPQADNLLAAGSWDGTVRIWEVQNSGQLVPKAQQSHDGPVLDVCWSDDGSKVFSGGCDKQAKLWD 100 (347)
T ss_pred ecCCCcccchheeEeccccCceEEecccCCceEEEEEecCCcccchhhhccCCCeEEEEEccCCceEEeeccCCceEEEE
Confidence 344455789999999996666888999999999999987 4555555557999999999999999999999999999999
Q ss_pred eeCCCCCceeEEeccCCCCCCeeEEEecCCC--EEEEEECCCCEEEEEeeecccceecchhhHHHHHhhccchhhhhccC
Q 003579 297 FDTTDGDPRLLRFRSGHSAPPLCIRFYANGR--HILSAGQDRAFRLFSVIQDQQSRELSQRHVAKRARKLKMKEEELKLK 374 (809)
Q Consensus 297 ~~~~~~~~~~~~~~~~h~~~v~~i~~~~~~~--~l~s~~~dg~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 374 (809)
+..+ .......|.++|.++.|-+... .|++|+.|.+|+.||.+...+...+..
T Consensus 101 L~S~-----Q~~~v~~Hd~pvkt~~wv~~~~~~cl~TGSWDKTlKfWD~R~~~pv~t~~L-------------------- 155 (347)
T KOG0647|consen 101 LASG-----QVSQVAAHDAPVKTCHWVPGMNYQCLVTGSWDKTLKFWDTRSSNPVATLQL-------------------- 155 (347)
T ss_pred ccCC-----CeeeeeecccceeEEEEecCCCcceeEecccccceeecccCCCCeeeeeec--------------------
Confidence 9876 2445568999999999998554 899999999999999987665544321
Q ss_pred ceeEEeeccccccccceeEEeecCCceEEEEEeeeeeecceeeecCCCCCCCeEEEEEcCCCCEEEEEeCCCcEEEEECC
Q 003579 375 PVIAFDCAEIRERDWCNVVTCHMDTAQAYVWRLQNFVLGEHILRPCPENPTAVKACTISACGNFAVLGTAGGWIERFNLQ 454 (809)
Q Consensus 375 ~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~v~~v~~s~~g~~l~~g~~~g~i~i~~~~ 454 (809)
+..+.++ +---..+++++.+..|.+|+++
T Consensus 156 -------------------------------------------------PeRvYa~--Dv~~pm~vVata~r~i~vynL~ 184 (347)
T KOG0647|consen 156 -------------------------------------------------PERVYAA--DVLYPMAVVATAERHIAVYNLE 184 (347)
T ss_pred -------------------------------------------------cceeeeh--hccCceeEEEecCCcEEEEEcC
Confidence 1223322 2234678999999999999998
Q ss_pred CCceeeeeeCcccccccCccccEEEEEEcCCCCEEEEEeCcCeEEEEECCCCce--eeeeecC----------CCeEEEE
Q 003579 455 SGISRGSYLDMSERSNYAHNGEVVGVACDSTNTLMISAGYHGDIKVWDFKGRDL--KSRWEVG----------CSLVKIV 522 (809)
Q Consensus 455 ~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~l~s~~~dg~i~iwd~~~~~~--~~~~~~~----------~~i~~~~ 522 (809)
.+....... ...-+-.++++++.++++..+.|+-+|.+.+..+..+.. -..++.+ ..|++++
T Consensus 185 n~~te~k~~------~SpLk~Q~R~va~f~d~~~~alGsiEGrv~iq~id~~~~~~nFtFkCHR~~~~~~~~VYaVNsi~ 258 (347)
T KOG0647|consen 185 NPPTEFKRI------ESPLKWQTRCVACFQDKDGFALGSIEGRVAIQYIDDPNPKDNFTFKCHRSTNSVNDDVYAVNSIA 258 (347)
T ss_pred CCcchhhhh------cCcccceeeEEEEEecCCceEeeeecceEEEEecCCCCccCceeEEEeccCCCCCCceEEecceE
Confidence 765433221 013455789999999998889999999999999887632 2233322 3578899
Q ss_pred EeeCCCEEEEEeCCCeEEEEEcCCCeEEEEEecCCCCeeeEEECCCCCEEEEEe
Q 003579 523 YHRVNGLLATVADDLVIRLFDVVALRMVRKFEGHTDRITDFCFSEDGKWLLSSG 576 (809)
Q Consensus 523 ~s~~~~~la~~~~d~~I~v~d~~~~~~~~~~~~h~~~I~~l~fspdg~~l~s~s 576 (809)
|+|.-..|++++.||++.+||-+....+.+.+.|..+|++.+|+.+|.+++.+.
T Consensus 259 FhP~hgtlvTaGsDGtf~FWDkdar~kLk~s~~~~qpItcc~fn~~G~ifaYA~ 312 (347)
T KOG0647|consen 259 FHPVHGTLVTAGSDGTFSFWDKDARTKLKTSETHPQPITCCSFNRNGSIFAYAL 312 (347)
T ss_pred eecccceEEEecCCceEEEecchhhhhhhccCcCCCccceeEecCCCCEEEEEe
Confidence 999999999999999999999998888888889999999999999999998663
No 104
>KOG0973 consensus Histone transcription regulator HIRA, WD repeat superfamily [Cell cycle control, cell division, chromosome partitioning; Transcription]
Probab=99.95 E-value=2.2e-26 Score=249.44 Aligned_cols=291 Identities=20% Similarity=0.247 Sum_probs=234.3
Q ss_pred CCCCEEEEEEcCCCCEEEEEe--CCCeEEEEEeeC------------CeEEEEEeccCCCcEEEEEEecCCCCEEEEEcC
Q 003579 180 WGSSISSCVSSPALDVVAVGC--SDGKIHVHNVRY------------DEELVTFTHSMRGAVTALAFSSDGQPLLASGAS 245 (809)
Q Consensus 180 ~~~~I~~l~~sp~~~~la~g~--~dg~i~iwd~~~------------~~~~~~~~~~~~~~V~~l~fs~dg~~~lasg~~ 245 (809)
+...|.++..+|++..+|+|+ .||.++||+... .+.+.+... |.+.|+|+.|++||+ +||+|++
T Consensus 12 ~~~~IfSIdv~pdg~~~aTgGq~~d~~~~iW~~~~vl~~~~~~~~~l~k~l~~m~~-h~~sv~CVR~S~dG~-~lAsGSD 89 (942)
T KOG0973|consen 12 NEKSIFSIDVHPDGVKFATGGQVLDGGIVIWSQDPVLDEKEEKNENLPKHLCTMDD-HDGSVNCVRFSPDGS-YLASGSD 89 (942)
T ss_pred CCeeEEEEEecCCceeEecCCccccccceeeccccccchhhhhhcccchhheeecc-ccCceeEEEECCCCC-eEeeccC
Confidence 356799999999999999999 899999998752 223344444 489999999999999 9999999
Q ss_pred CCcEEEEECCC------------------ceeeeeeecccccceEEEEEecCCCEEEEEcCCCcEEEEEeeCCCCCceeE
Q 003579 246 SGVISIWNLEK------------------RRLQSVIREAHDNAIISLHFFANEPVLMSASADNSIKMWIFDTTDGDPRLL 307 (809)
Q Consensus 246 dg~I~iwdl~~------------------~~~~~~~~~~h~~~V~~l~~~~~~~~l~s~s~d~~i~vw~~~~~~~~~~~~ 307 (809)
|+.|.||.... -+....+. +|.+.|..++|+|++.+|++++.|++|.+|+..+- ..+
T Consensus 90 D~~v~iW~~~~~~~~~~fgs~g~~~~vE~wk~~~~l~-~H~~DV~Dv~Wsp~~~~lvS~s~DnsViiwn~~tF----~~~ 164 (942)
T KOG0973|consen 90 DRLVMIWERAEIGSGTVFGSTGGAKNVESWKVVSILR-GHDSDVLDVNWSPDDSLLVSVSLDNSVIIWNAKTF----ELL 164 (942)
T ss_pred cceEEEeeecccCCcccccccccccccceeeEEEEEe-cCCCccceeccCCCccEEEEecccceEEEEccccc----eee
Confidence 99999999872 03556666 89999999999999999999999999999976554 678
Q ss_pred EeccCCCCCCeeEEEecCCCEEEEEECCCCEEEEEeeecccceecchhhHHHHHhhccchhhhhccCceeEEeecccccc
Q 003579 308 RFRSGHSAPPLCIRFYANGRHILSAGQDRAFRLFSVIQDQQSRELSQRHVAKRARKLKMKEEELKLKPVIAFDCAEIRER 387 (809)
Q Consensus 308 ~~~~~h~~~v~~i~~~~~~~~l~s~~~dg~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~ 387 (809)
+.+.+|...|..+.|.|-|++|++-+.|++|++|.+..-...+.+.....
T Consensus 165 ~vl~~H~s~VKGvs~DP~Gky~ASqsdDrtikvwrt~dw~i~k~It~pf~------------------------------ 214 (942)
T KOG0973|consen 165 KVLRGHQSLVKGVSWDPIGKYFASQSDDRTLKVWRTSDWGIEKSITKPFE------------------------------ 214 (942)
T ss_pred eeeecccccccceEECCccCeeeeecCCceEEEEEcccceeeEeeccchh------------------------------
Confidence 88899999999999999999999999999999999655333332221000
Q ss_pred ccceeEEeecCCceEEEEEeeeeeecceeeecCCCCCCCeEEEEEcCCCCEEEEEeCC----CcEEEEECCCCceeeeee
Q 003579 388 DWCNVVTCHMDTAQAYVWRLQNFVLGEHILRPCPENPTAVKACTISACGNFAVLGTAG----GWIERFNLQSGISRGSYL 463 (809)
Q Consensus 388 ~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~v~~v~~s~~g~~l~~g~~~----g~i~i~~~~~~~~~~~~~ 463 (809)
..........+.|||||.+|++...- ..+.+.+-.+-..-..+.
T Consensus 215 --------------------------------~~~~~T~f~RlSWSPDG~~las~nA~n~~~~~~~IieR~tWk~~~~Lv 262 (942)
T KOG0973|consen 215 --------------------------------ESPLTTFFLRLSWSPDGHHLASPNAVNGGKSTIAIIERGTWKVDKDLV 262 (942)
T ss_pred --------------------------------hCCCcceeeecccCCCcCeecchhhccCCcceeEEEecCCceeeeeee
Confidence 00112567889999999999986432 366777765555555554
Q ss_pred CcccccccCccccEEEEEEcCC-----CC------------EEEEEeCcCeEEEEECCCCceeeeeec--CCCeEEEEEe
Q 003579 464 DMSERSNYAHNGEVVGVACDST-----NT------------LMISAGYHGDIKVWDFKGRDLKSRWEV--GCSLVKIVYH 524 (809)
Q Consensus 464 ~~~~~~~~~h~~~v~~l~~~~~-----~~------------~l~s~~~dg~i~iwd~~~~~~~~~~~~--~~~i~~~~~s 524 (809)
+|.+++.++.|+|. .+ .+|+|+.|++|.||.....+++..+.. ...|..++|+
T Consensus 263 --------GH~~p~evvrFnP~lfe~~~~ng~~~~~~~~y~i~AvgSqDrSlSVW~T~~~RPl~vi~~lf~~SI~DmsWs 334 (942)
T KOG0973|consen 263 --------GHSAPVEVVRFNPKLFERNNKNGTSTQPNCYYCIAAVGSQDRSLSVWNTALPRPLFVIHNLFNKSIVDMSWS 334 (942)
T ss_pred --------cCCCceEEEEeChHHhccccccCCccCCCcceEEEEEecCCccEEEEecCCCCchhhhhhhhcCceeeeeEc
Confidence 99999999999872 12 678899999999999987777665543 3899999999
Q ss_pred eCCCEEEEEeCCCeEEEEEcCCC
Q 003579 525 RVNGLLATVADDLVIRLFDVVAL 547 (809)
Q Consensus 525 ~~~~~la~~~~d~~I~v~d~~~~ 547 (809)
|||-.|.+++.||+|.++..+..
T Consensus 335 pdG~~LfacS~DGtV~~i~Fee~ 357 (942)
T KOG0973|consen 335 PDGFSLFACSLDGTVALIHFEEK 357 (942)
T ss_pred CCCCeEEEEecCCeEEEEEcchH
Confidence 99999999999999999988754
No 105
>KOG0294 consensus WD40 repeat-containing protein [Function unknown]
Probab=99.95 E-value=1.6e-25 Score=209.44 Aligned_cols=284 Identities=23% Similarity=0.384 Sum_probs=224.9
Q ss_pred EEEEEeCCCeEEEEeCCC------------CceEEEEcCCCCCEEEEEEcCCCCEEEEEeCCCeEEEEEeeCCeEEEEEe
Q 003579 153 KVIVGSQEGSLQLWNIST------------KKKLYEFKGWGSSISSCVSSPALDVVAVGCSDGKIHVHNVRYDEELVTFT 220 (809)
Q Consensus 153 ~l~~~~~dg~i~lwd~~~------------~~~~~~~~~~~~~I~~l~~sp~~~~la~g~~dg~i~iwd~~~~~~~~~~~ 220 (809)
.|++|+....|.-+++.- ..+++.+..|.++|++++.+ +.++|+|+.|-+|+|||+++...+..+.
T Consensus 3 ~iIvGtYE~~i~Gf~l~~~~~~~~~s~~~~l~~lF~~~aH~~sitavAVs--~~~~aSGssDetI~IYDm~k~~qlg~ll 80 (362)
T KOG0294|consen 3 EIIVGTYEHVILGFKLDPEPKGCTDSVKPTLKPLFAFSAHAGSITALAVS--GPYVASGSSDETIHIYDMRKRKQLGILL 80 (362)
T ss_pred eEEEeeeeeEEEEEEeccCccccccccceeeeccccccccccceeEEEec--ceeEeccCCCCcEEEEeccchhhhccee
Confidence 467777777666665431 12366778999999999987 7899999999999999999999999888
Q ss_pred ccCCCcEEEEEEecCCC-CEEEEEcCCCcEEEEECCCceeeeeeecccccceEEEEEecCCCEEEEEcCCCcEEEEEeeC
Q 003579 221 HSMRGAVTALAFSSDGQ-PLLASGASSGVISIWNLEKRRLQSVIREAHDNAIISLHFFANEPVLMSASADNSIKMWIFDT 299 (809)
Q Consensus 221 ~~~~~~V~~l~fs~dg~-~~lasg~~dg~I~iwdl~~~~~~~~~~~~h~~~V~~l~~~~~~~~l~s~s~d~~i~vw~~~~ 299 (809)
.| .+.|+++.|.++-. ..|++|+.||.|.+|+...-.++..++ +|.+.|+.++.+|.+++-++.+.|+.++.|++-.
T Consensus 81 ~H-agsitaL~F~~~~S~shLlS~sdDG~i~iw~~~~W~~~~slK-~H~~~Vt~lsiHPS~KLALsVg~D~~lr~WNLV~ 158 (362)
T KOG0294|consen 81 SH-AGSITALKFYPPLSKSHLLSGSDDGHIIIWRVGSWELLKSLK-AHKGQVTDLSIHPSGKLALSVGGDQVLRTWNLVR 158 (362)
T ss_pred cc-ccceEEEEecCCcchhheeeecCCCcEEEEEcCCeEEeeeec-ccccccceeEecCCCceEEEEcCCceeeeehhhc
Confidence 76 89999999998752 358899999999999999999999999 9999999999999999999999999999998866
Q ss_pred CCCCceeEEeccCCCCCCeeEEEecCCCEEEEEECCCCEEEEEeeecccceecchhhHHHHHhhccchhhhhccCceeEE
Q 003579 300 TDGDPRLLRFRSGHSAPPLCIRFYANGRHILSAGQDRAFRLFSVIQDQQSRELSQRHVAKRARKLKMKEEELKLKPVIAF 379 (809)
Q Consensus 300 ~~~~~~~~~~~~~h~~~v~~i~~~~~~~~l~s~~~dg~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~ 379 (809)
+.... ...+ ++ ..+.+.|+|.|.+++.++.++ |-+|.+.......++..
T Consensus 159 Gr~a~--v~~L-~~--~at~v~w~~~Gd~F~v~~~~~-i~i~q~d~A~v~~~i~~------------------------- 207 (362)
T KOG0294|consen 159 GRVAF--VLNL-KN--KATLVSWSPQGDHFVVSGRNK-IDIYQLDNASVFREIEN------------------------- 207 (362)
T ss_pred Cccce--eecc-CC--cceeeEEcCCCCEEEEEeccE-EEEEecccHhHhhhhhc-------------------------
Confidence 53321 1111 22 334599999999999988876 88888765443333211
Q ss_pred eeccccccccceeEEeecCCceEEEEEeeeeeecceeeecCCCCCCCeEEEEEcCCCCEEEEEeCCCcEEEEECCCCcee
Q 003579 380 DCAEIRERDWCNVVTCHMDTAQAYVWRLQNFVLGEHILRPCPENPTAVKACTISACGNFAVLGTAGGWIERFNLQSGISR 459 (809)
Q Consensus 380 ~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~v~~v~~s~~g~~l~~g~~~g~i~i~~~~~~~~~ 459 (809)
+..+.++.| -++..+++|..++.|.+||..++...
T Consensus 208 --------------------------------------------~~r~l~~~~-l~~~~L~vG~d~~~i~~~D~ds~~~~ 242 (362)
T KOG0294|consen 208 --------------------------------------------PKRILCATF-LDGSELLVGGDNEWISLKDTDSDTPL 242 (362)
T ss_pred --------------------------------------------cccceeeee-cCCceEEEecCCceEEEeccCCCccc
Confidence 122333333 25789999999999999999998888
Q ss_pred eeeeCcccccccCccccEEEEEE--cCCCCEEEEEeCcCeEEEEECCCC-----ceeeeeecCCCeEEEEEe
Q 003579 460 GSYLDMSERSNYAHNGEVVGVAC--DSTNTLMISAGYHGDIKVWDFKGR-----DLKSRWEVGCSLVKIVYH 524 (809)
Q Consensus 460 ~~~~~~~~~~~~~h~~~v~~l~~--~~~~~~l~s~~~dg~i~iwd~~~~-----~~~~~~~~~~~i~~~~~s 524 (809)
..+. +|...|.++.+ .|++.+|++++.||.|++||+... +++..+..+..++|+...
T Consensus 243 ~~~~--------AH~~RVK~i~~~~~~~~~~lvTaSSDG~I~vWd~~~~~k~~~~~l~e~n~~~RltCl~~~ 306 (362)
T KOG0294|consen 243 TEFL--------AHENRVKDIASYTNPEHEYLVTASSDGFIKVWDIDMETKKRPTLLAELNTNVRLTCLRVK 306 (362)
T ss_pred eeee--------cchhheeeeEEEecCCceEEEEeccCceEEEEEccccccCCcceeEEeecCCccceeeeh
Confidence 7776 99999999984 567899999999999999999866 566666666666666543
No 106
>KOG0646 consensus WD40 repeat protein [General function prediction only]
Probab=99.95 E-value=2.2e-26 Score=226.40 Aligned_cols=293 Identities=19% Similarity=0.316 Sum_probs=232.3
Q ss_pred CeEEEEeCCCCceEEEEcCC-CCCEEEEEEcCCCCEEEEEe-CCCeEEEEEeeCCeEEEEEeccCCCcEEEEEEecCCCC
Q 003579 161 GSLQLWNISTKKKLYEFKGW-GSSISSCVSSPALDVVAVGC-SDGKIHVHNVRYDEELVTFTHSMRGAVTALAFSSDGQP 238 (809)
Q Consensus 161 g~i~lwd~~~~~~~~~~~~~-~~~I~~l~~sp~~~~la~g~-~dg~i~iwd~~~~~~~~~~~~~~~~~V~~l~fs~dg~~ 238 (809)
.++.+||+++|....++++- ...-.++..- .+.+++++. ....+.+|.+........... -.++|.+++-+|+|.
T Consensus 18 ~~~~~~dl~TGt~~~~ykg~~~a~~~sl~~l-~~~yllsaq~~rp~l~vw~i~k~~~~~q~~v-~Pg~v~al~s~n~G~- 94 (476)
T KOG0646|consen 18 INCIVWDLRTGTSLLQYKGSYLAQAASLTAL-NNEYLLSAQLKRPLLHVWEILKKDQVVQYIV-LPGPVHALASSNLGY- 94 (476)
T ss_pred cceeEEecCCCceeEEecCcccccchhhhhh-chhheeeecccCccccccccCchhhhhhhcc-cccceeeeecCCCce-
Confidence 45999999999999999874 1111111111 224666654 446899999876655542222 268999999999998
Q ss_pred EEEEEcCCCcEEEEECCCceeeeeeecccccceEEEEEecCCCEEEEEcCCCcEEEEEeeC-----CCCCceeEEeccCC
Q 003579 239 LLASGASSGVISIWNLEKRRLQSVIREAHDNAIISLHFFANEPVLMSASADNSIKMWIFDT-----TDGDPRLLRFRSGH 313 (809)
Q Consensus 239 ~lasg~~dg~I~iwdl~~~~~~~~~~~~h~~~V~~l~~~~~~~~l~s~s~d~~i~vw~~~~-----~~~~~~~~~~~~~h 313 (809)
+|+.|+..|.|++|.+.+|.++..+. +|...|+++.|+.|+.+++|||.||.|.+|.+.. .+..+..+..+..|
T Consensus 95 ~l~ag~i~g~lYlWelssG~LL~v~~-aHYQ~ITcL~fs~dgs~iiTgskDg~V~vW~l~~lv~a~~~~~~~p~~~f~~H 173 (476)
T KOG0646|consen 95 FLLAGTISGNLYLWELSSGILLNVLS-AHYQSITCLKFSDDGSHIITGSKDGAVLVWLLTDLVSADNDHSVKPLHIFSDH 173 (476)
T ss_pred EEEeecccCcEEEEEeccccHHHHHH-hhccceeEEEEeCCCcEEEecCCCccEEEEEEEeecccccCCCccceeeeccC
Confidence 78878799999999999999999997 9999999999999999999999999999998742 23356778889999
Q ss_pred CCCCeeEEEecC--CCEEEEEECCCCEEEEEeeecccceecchhhHHHHHhhccchhhhhccCceeEEeeccccccccce
Q 003579 314 SAPPLCIRFYAN--GRHILSAGQDRAFRLFSVIQDQQSRELSQRHVAKRARKLKMKEEELKLKPVIAFDCAEIRERDWCN 391 (809)
Q Consensus 314 ~~~v~~i~~~~~--~~~l~s~~~dg~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~ 391 (809)
.-+|+.+...+. ..+++++|.|+++++||+..+.....+.
T Consensus 174 tlsITDl~ig~Gg~~~rl~TaS~D~t~k~wdlS~g~LLlti~-------------------------------------- 215 (476)
T KOG0646|consen 174 TLSITDLQIGSGGTNARLYTASEDRTIKLWDLSLGVLLLTIT-------------------------------------- 215 (476)
T ss_pred cceeEEEEecCCCccceEEEecCCceEEEEEeccceeeEEEe--------------------------------------
Confidence 999999988764 4689999999999999997764433321
Q ss_pred eEEeecCCceEEEEEeeeeeecceeeecCCCCCCCeEEEEEcCCCCEEEEEeCCCcEEEEECCCCce--e------eeee
Q 003579 392 VVTCHMDTAQAYVWRLQNFVLGEHILRPCPENPTAVKACTISACGNFAVLGTAGGWIERFNLQSGIS--R------GSYL 463 (809)
Q Consensus 392 ~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~v~~v~~s~~g~~l~~g~~~g~i~i~~~~~~~~--~------~~~~ 463 (809)
.+..+.+++++|-++.+++|+++|.|.+.++..-.. . ....
T Consensus 216 -------------------------------fp~si~av~lDpae~~~yiGt~~G~I~~~~~~~~~~~~~~v~~k~~~~~ 264 (476)
T KOG0646|consen 216 -------------------------------FPSSIKAVALDPAERVVYIGTEEGKIFQNLLFKLSGQSAGVNQKGRHEE 264 (476)
T ss_pred -------------------------------cCCcceeEEEcccccEEEecCCcceEEeeehhcCCcccccccccccccc
Confidence 237899999999999999999999999988754331 1 1111
Q ss_pred CcccccccCccc--cEEEEEEcCCCCEEEEEeCcCeEEEEECCCCceeeeee-cCCCeEEEEEeeC
Q 003579 464 DMSERSNYAHNG--EVVGVACDSTNTLMISAGYHGDIKVWDFKGRDLKSRWE-VGCSLVKIVYHRV 526 (809)
Q Consensus 464 ~~~~~~~~~h~~--~v~~l~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~-~~~~i~~~~~s~~ 526 (809)
......+.+|.+ +|+|++++-||.+|++|+.||.|.+||..+.++++++. ..++|+.+.+.|-
T Consensus 265 ~t~~~~~~Gh~~~~~ITcLais~DgtlLlSGd~dg~VcvWdi~S~Q~iRtl~~~kgpVtnL~i~~~ 330 (476)
T KOG0646|consen 265 NTQINVLVGHENESAITCLAISTDGTLLLSGDEDGKVCVWDIYSKQCIRTLQTSKGPVTNLQINPL 330 (476)
T ss_pred cceeeeeccccCCcceeEEEEecCccEEEeeCCCCCEEEEecchHHHHHHHhhhccccceeEeecc
Confidence 222234568888 99999999999999999999999999999999999998 6689998888663
No 107
>KOG1273 consensus WD40 repeat protein [General function prediction only]
Probab=99.95 E-value=5e-26 Score=212.33 Aligned_cols=279 Identities=19% Similarity=0.338 Sum_probs=209.4
Q ss_pred EEEEEEecCCCCEEEEEcCCCcEEEEECCCceeeeeeecccccceEEEEEecCCCEEEEEcCCCcEEEEEeeCCCCCcee
Q 003579 227 VTALAFSSDGQPLLASGASSGVISIWNLEKRRLQSVIREAHDNAIISLHFFANEPVLMSASADNSIKMWIFDTTDGDPRL 306 (809)
Q Consensus 227 V~~l~fs~dg~~~lasg~~dg~I~iwdl~~~~~~~~~~~~h~~~V~~l~~~~~~~~l~s~s~d~~i~vw~~~~~~~~~~~ 306 (809)
..|+.|++.|. +||+|+.||.|.|||+.+...-..+. +|..+|++++|+++|+.|+|++.|..|++||+..++.
T Consensus 26 a~~~~Fs~~G~-~lAvGc~nG~vvI~D~~T~~iar~ls-aH~~pi~sl~WS~dgr~LltsS~D~si~lwDl~~gs~---- 99 (405)
T KOG1273|consen 26 AECCQFSRWGD-YLAVGCANGRVVIYDFDTFRIARMLS-AHVRPITSLCWSRDGRKLLTSSRDWSIKLWDLLKGSP---- 99 (405)
T ss_pred cceEEeccCcc-eeeeeccCCcEEEEEccccchhhhhh-ccccceeEEEecCCCCEeeeecCCceeEEEeccCCCc----
Confidence 78999999999 99999999999999999999887887 9999999999999999999999999999999987753
Q ss_pred EEeccCCCCCCeeEEEecCCC-EEEEEECCCCEEEEEeeecccceecchhhHHHHHhhccchhhhhccCceeEEeecccc
Q 003579 307 LRFRSGHSAPPLCIRFYANGR-HILSAGQDRAFRLFSVIQDQQSRELSQRHVAKRARKLKMKEEELKLKPVIAFDCAEIR 385 (809)
Q Consensus 307 ~~~~~~h~~~v~~i~~~~~~~-~l~s~~~dg~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~ 385 (809)
++.. ....+|..+.|+|..+ ..+.+-.+..-.+.++..+
T Consensus 100 l~ri-rf~spv~~~q~hp~k~n~~va~~~~~sp~vi~~s~~--------------------------------------- 139 (405)
T KOG1273|consen 100 LKRI-RFDSPVWGAQWHPRKRNKCVATIMEESPVVIDFSDP--------------------------------------- 139 (405)
T ss_pred eeEE-EccCccceeeeccccCCeEEEEEecCCcEEEEecCC---------------------------------------
Confidence 2222 4568999999999432 2222222222222222110
Q ss_pred ccccceeEEeecCCceEEEEEeeeeeecceeeecCCCCCCCeEEEEEcCCCCEEEEEeCCCcEEEEECCCCceeeeeeCc
Q 003579 386 ERDWCNVVTCHMDTAQAYVWRLQNFVLGEHILRPCPENPTAVKACTISACGNFAVLGTAGGWIERFNLQSGISRGSYLDM 465 (809)
Q Consensus 386 ~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~v~~v~~s~~g~~l~~g~~~g~i~i~~~~~~~~~~~~~~~ 465 (809)
.-+.+..+++|..
T Consensus 140 ----------------------------------------~h~~Lp~d~d~dl--------------------------- 152 (405)
T KOG1273|consen 140 ----------------------------------------KHSVLPKDDDGDL--------------------------- 152 (405)
T ss_pred ----------------------------------------ceeeccCCCcccc---------------------------
Confidence 0011111111110
Q ss_pred ccccccCccccEEEEEEcCCCCEEEEEeCcCeEEEEECCCCceeeeeecC--CCeEEEEEeeCCCEEEEEeCCCeEEEEE
Q 003579 466 SERSNYAHNGEVVGVACDSTNTLMISAGYHGDIKVWDFKGRDLKSRWEVG--CSLVKIVYHRVNGLLATVADDLVIRLFD 543 (809)
Q Consensus 466 ~~~~~~~h~~~v~~l~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~--~~i~~~~~s~~~~~la~~~~d~~I~v~d 543 (809)
+..-.+..|++.|+++++|...|.+.++|..+.+++..++.. ..|.++.++..|+.++..+.|..||.|+
T Consensus 153 --------n~sas~~~fdr~g~yIitGtsKGkllv~~a~t~e~vas~rits~~~IK~I~~s~~g~~liiNtsDRvIR~ye 224 (405)
T KOG1273|consen 153 --------NSSASHGVFDRRGKYIITGTSKGKLLVYDAETLECVASFRITSVQAIKQIIVSRKGRFLIINTSDRVIRTYE 224 (405)
T ss_pred --------ccccccccccCCCCEEEEecCcceEEEEecchheeeeeeeechheeeeEEEEeccCcEEEEecCCceEEEEe
Confidence 111112267888999999999999999999999988887665 6889999999999999999999999999
Q ss_pred cCCC-------e--EEEEEec--CCCCeeeEEECCCCCEEEEEe-CCCeEEEEEcCCccEEEEeeeCcc--eEEEEEcCC
Q 003579 544 VVAL-------R--MVRKFEG--HTDRITDFCFSEDGKWLLSSG-MDGSLRIWDVILARQIDAIHVDVS--ITALSLSPN 609 (809)
Q Consensus 544 ~~~~-------~--~~~~~~~--h~~~I~~l~fspdg~~l~s~s-~D~~I~vwd~~~~~~i~~~~~~~~--v~~l~~spd 609 (809)
+..- + +..+++. ..-.-.+++||.||.|++.++ .-..++||.-..|.+++.+++... ...+.|+|-
T Consensus 225 ~~di~~~~r~~e~e~~~K~qDvVNk~~Wk~ccfs~dgeYv~a~s~~aHaLYIWE~~~GsLVKILhG~kgE~l~DV~whp~ 304 (405)
T KOG1273|consen 225 ISDIDDEGRDGEVEPEHKLQDVVNKLQWKKCCFSGDGEYVCAGSARAHALYIWEKSIGSLVKILHGTKGEELLDVNWHPV 304 (405)
T ss_pred hhhhcccCccCCcChhHHHHHHHhhhhhhheeecCCccEEEeccccceeEEEEecCCcceeeeecCCchhheeecccccc
Confidence 8631 1 1111111 122345789999999998776 567899999999999999998763 889999999
Q ss_pred CCeEEEEEeCCCeEEEeec
Q 003579 610 MDVLATAHVDQNGVYLWVN 628 (809)
Q Consensus 610 g~~lat~~~d~~~i~lW~~ 628 (809)
...+++. ..| .|++|..
T Consensus 305 rp~i~si-~sg-~v~iw~~ 321 (405)
T KOG1273|consen 305 RPIIASI-ASG-VVYIWAV 321 (405)
T ss_pred eeeeeec-cCC-ceEEEEe
Confidence 9999888 344 5999985
No 108
>KOG0268 consensus Sof1-like rRNA processing protein (contains WD40 repeats) [RNA processing and modification]
Probab=99.95 E-value=3.3e-27 Score=224.35 Aligned_cols=292 Identities=15% Similarity=0.230 Sum_probs=245.5
Q ss_pred EEEEccccccEEEEEEeC---CEEEEEeCCCcEEEEEcCCCccccceeeeEEcCCccccEEEEeCCCCCCEEEEEeCCCe
Q 003579 86 VATWSRHSAKVNLLLLFG---EHILSIDIDGNMFIWAFKGIEENLAPVGHVKLDDKFTPTCIMHPDTYLNKVIVGSQEGS 162 (809)
Q Consensus 86 ~~~~~~h~~~V~~l~~~g---~~l~s~~~dg~i~vWd~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~l~~~~~dg~ 162 (809)
++.+.||...|.+++-.. ..++||+.||.|++||+...++ ..+++.|.+++...++.. +.+++++.|.+
T Consensus 59 v~~L~gHrdGV~~lakhp~~ls~~aSGs~DG~VkiWnlsqR~~----~~~f~AH~G~V~Gi~v~~----~~~~tvgdDKt 130 (433)
T KOG0268|consen 59 VGSLDGHRDGVSCLAKHPNKLSTVASGSCDGEVKIWNLSQREC----IRTFKAHEGLVRGICVTQ----TSFFTVGDDKT 130 (433)
T ss_pred hhhccccccccchhhcCcchhhhhhccccCceEEEEehhhhhh----hheeecccCceeeEEecc----cceEEecCCcc
Confidence 455889999999999643 5689999999999999999888 788888999988888877 34888889999
Q ss_pred EEEEeCCCCceEEEEcCCCCCEEEEEEcCCCCEEEEEeCCCeEEEEEeeCCeEEEEEeccCCCcEEEEEEecCCCCEEEE
Q 003579 163 LQLWNISTKKKLYEFKGWGSSISSCVSSPALDVVAVGCSDGKIHVHNVRYDEELVTFTHSMRGAVTALAFSSDGQPLLAS 242 (809)
Q Consensus 163 i~lwd~~~~~~~~~~~~~~~~I~~l~~sp~~~~la~g~~dg~i~iwd~~~~~~~~~~~~~~~~~V~~l~fs~dg~~~las 242 (809)
|+.|.+.. .+++++.+ .+.+..+.-+..+..+|+++. .|.|||..-..++.++..+ ...|.++.|+|-...+|++
T Consensus 131 vK~wk~~~-~p~~tilg-~s~~~gIdh~~~~~~FaTcGe--~i~IWD~~R~~Pv~smswG-~Dti~svkfNpvETsILas 205 (433)
T KOG0268|consen 131 VKQWKIDG-PPLHTILG-KSVYLGIDHHRKNSVFATCGE--QIDIWDEQRDNPVSSMSWG-ADSISSVKFNPVETSILAS 205 (433)
T ss_pred eeeeeccC-Ccceeeec-cccccccccccccccccccCc--eeeecccccCCccceeecC-CCceeEEecCCCcchheee
Confidence 99999854 58888876 566777777777888898886 5999999999999999987 6789999999998889999
Q ss_pred EcCCCcEEEEECCCceeeeeeecccccceEEEEEecCCCEEEEEcCCCcEEEEEeeCCCCCceeEEeccCCCCCCeeEEE
Q 003579 243 GASSGVISIWNLEKRRLQSVIREAHDNAIISLHFFANEPVLMSASADNSIKMWIFDTTDGDPRLLRFRSGHSAPPLCIRF 322 (809)
Q Consensus 243 g~~dg~I~iwdl~~~~~~~~~~~~h~~~V~~l~~~~~~~~l~s~s~d~~i~vw~~~~~~~~~~~~~~~~~h~~~v~~i~~ 322 (809)
|+.|+.|.+||++++.++..+. -...-+.++|+|.+-.+++++.|..+..+|+.... +.+....+|...|.++.|
T Consensus 206 ~~sDrsIvLyD~R~~~Pl~KVi--~~mRTN~IswnPeafnF~~a~ED~nlY~~DmR~l~---~p~~v~~dhvsAV~dVdf 280 (433)
T KOG0268|consen 206 CASDRSIVLYDLRQASPLKKVI--LTMRTNTICWNPEAFNFVAANEDHNLYTYDMRNLS---RPLNVHKDHVSAVMDVDF 280 (433)
T ss_pred eccCCceEEEecccCCccceee--eeccccceecCccccceeeccccccceehhhhhhc---ccchhhcccceeEEEecc
Confidence 9999999999999998887775 44556889999988889999999999999887654 567778899999999999
Q ss_pred ecCCCEEEEEECCCCEEEEEeeecccceecchhhHHHHHhhccchhhhhccCceeEEeeccccccccceeEEeecCCceE
Q 003579 323 YANGRHILSAGQDRAFRLFSVIQDQQSRELSQRHVAKRARKLKMKEEELKLKPVIAFDCAEIRERDWCNVVTCHMDTAQA 402 (809)
Q Consensus 323 ~~~~~~l~s~~~dg~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~ 402 (809)
+|.|+-+++||.|.+|++|.+..+........
T Consensus 281 sptG~EfvsgsyDksIRIf~~~~~~SRdiYht------------------------------------------------ 312 (433)
T KOG0268|consen 281 SPTGQEFVSGSYDKSIRIFPVNHGHSRDIYHT------------------------------------------------ 312 (433)
T ss_pred CCCcchhccccccceEEEeecCCCcchhhhhH------------------------------------------------
Confidence 99999999999999999999865532221111
Q ss_pred EEEEeeeeeecceeeecCCCCCCCeEEEEEcCCCCEEEEEeCCCcEEEEECCCCceeeee
Q 003579 403 YVWRLQNFVLGEHILRPCPENPTAVKACTISACGNFAVLGTAGGWIERFNLQSGISRGSY 462 (809)
Q Consensus 403 ~~w~~~~~~~~~~~~~~~~~~~~~v~~v~~s~~g~~l~~g~~~g~i~i~~~~~~~~~~~~ 462 (809)
+ ....|.++.||.|.+|+++|+.|+.|++|.....+....+
T Consensus 313 -------k------------RMq~V~~Vk~S~Dskyi~SGSdd~nvRlWka~Aseklgv~ 353 (433)
T KOG0268|consen 313 -------K------------RMQHVFCVKYSMDSKYIISGSDDGNVRLWKAKASEKLGVI 353 (433)
T ss_pred -------h------------hhheeeEEEEeccccEEEecCCCcceeeeecchhhhcCCC
Confidence 0 0167899999999999999999999999998766555444
No 109
>KOG0308 consensus Conserved WD40 repeat-containing protein [Function unknown]
Probab=99.95 E-value=1e-26 Score=237.04 Aligned_cols=346 Identities=18% Similarity=0.266 Sum_probs=270.1
Q ss_pred EEEEc-CCCCEEEEEeCCCeEEEEEeeCCeE------EEEEeccCCCcEEEEEEecCCCCEEEEEcCCCcEEEEECCCc-
Q 003579 186 SCVSS-PALDVVAVGCSDGKIHVHNVRYDEE------LVTFTHSMRGAVTALAFSSDGQPLLASGASSGVISIWNLEKR- 257 (809)
Q Consensus 186 ~l~~s-p~~~~la~g~~dg~i~iwd~~~~~~------~~~~~~~~~~~V~~l~fs~dg~~~lasg~~dg~I~iwdl~~~- 257 (809)
++..+ |.+++|.+|+.||.|++|+...... +.++.. |...|..+....+|+ .|++++.|-+|++|+...+
T Consensus 29 ~Lq~da~~~ryLfTgGRDg~i~~W~~~~d~~~~s~~~~asme~-HsDWVNDiiL~~~~~-tlIS~SsDtTVK~W~~~~~~ 106 (735)
T KOG0308|consen 29 ALQLDAPNGRYLFTGGRDGIIRLWSVTQDSNEPSTPYIASMEH-HSDWVNDIILCGNGK-TLISASSDTTVKVWNAHKDN 106 (735)
T ss_pred hccccCCCCceEEecCCCceEEEeccccccCCcccchhhhhhh-hHhHHhhHHhhcCCC-ceEEecCCceEEEeecccCc
Confidence 34444 4567899999999999999875443 445544 489999999999998 7999999999999999887
Q ss_pred -eeeeeeecccccceEEEEE-ecCCCEEEEEcCCCcEEEEEeeCCCC------CceeEEecc-CCCCCCeeEEEecCCCE
Q 003579 258 -RLQSVIREAHDNAIISLHF-FANEPVLMSASADNSIKMWIFDTTDG------DPRLLRFRS-GHSAPPLCIRFYANGRH 328 (809)
Q Consensus 258 -~~~~~~~~~h~~~V~~l~~-~~~~~~l~s~s~d~~i~vw~~~~~~~------~~~~~~~~~-~h~~~v~~i~~~~~~~~ 328 (809)
-+..++. .|...|.|+++ .++..++++||-|+.|.+||++.... ......... |+..+|++++..+.|..
T Consensus 107 ~~c~stir-~H~DYVkcla~~ak~~~lvaSgGLD~~IflWDin~~~~~l~~s~n~~t~~sl~sG~k~siYSLA~N~t~t~ 185 (735)
T KOG0308|consen 107 TFCMSTIR-THKDYVKCLAYIAKNNELVASGGLDRKIFLWDINTGTATLVASFNNVTVNSLGSGPKDSIYSLAMNQTGTI 185 (735)
T ss_pred chhHhhhh-cccchheeeeecccCceeEEecCCCccEEEEEccCcchhhhhhccccccccCCCCCccceeeeecCCcceE
Confidence 5777777 89999999999 77888999999999999999986632 111122223 89999999999999999
Q ss_pred EEEEECCCCEEEEEeeecccceecchhhHHHHHhhccchhhhhccCceeEEeeccccccccceeEEeecCCceEEEEEee
Q 003579 329 ILSAGQDRAFRLFSVIQDQQSRELSQRHVAKRARKLKMKEEELKLKPVIAFDCAEIRERDWCNVVTCHMDTAQAYVWRLQ 408 (809)
Q Consensus 329 l~s~~~dg~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~ 408 (809)
+++|+..+.+++||.++......+
T Consensus 186 ivsGgtek~lr~wDprt~~kimkL-------------------------------------------------------- 209 (735)
T KOG0308|consen 186 IVSGGTEKDLRLWDPRTCKKIMKL-------------------------------------------------------- 209 (735)
T ss_pred EEecCcccceEEeccccccceeee--------------------------------------------------------
Confidence 999999999999998876554433
Q ss_pred eeeecceeeecCCCCCCCeEEEEEcCCCCEEEEEeCCCcEEEEECCCCceeeeeeCcccccccCccccEEEEEEcCCCCE
Q 003579 409 NFVLGEHILRPCPENPTAVKACTISACGNFAVLGTAGGWIERFNLQSGISRGSYLDMSERSNYAHNGEVVGVACDSTNTL 488 (809)
Q Consensus 409 ~~~~~~~~~~~~~~~~~~v~~v~~s~~g~~l~~g~~~g~i~i~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~ 488 (809)
.+|...|+++.+++||+.++++++||+|++||+...+++.++. .|...|.++..+|+-+.
T Consensus 210 ------------rGHTdNVr~ll~~dDGt~~ls~sSDgtIrlWdLgqQrCl~T~~--------vH~e~VWaL~~~~sf~~ 269 (735)
T KOG0308|consen 210 ------------RGHTDNVRVLLVNDDGTRLLSASSDGTIRLWDLGQQRCLATYI--------VHKEGVWALQSSPSFTH 269 (735)
T ss_pred ------------eccccceEEEEEcCCCCeEeecCCCceEEeeeccccceeeeEE--------eccCceEEEeeCCCcce
Confidence 2677999999999999999999999999999999999999986 89999999999999999
Q ss_pred EEEEeCcCeEEEEECCC-CceeeeeecCCCeEEEEEeeCCCEEEEEeCCCeEEEEEcCCCeEEEEEecCCCCeeeEEECC
Q 003579 489 MISAGYHGDIKVWDFKG-RDLKSRWEVGCSLVKIVYHRVNGLLATVADDLVIRLFDVVALRMVRKFEGHTDRITDFCFSE 567 (809)
Q Consensus 489 l~s~~~dg~i~iwd~~~-~~~~~~~~~~~~i~~~~~s~~~~~la~~~~d~~I~v~d~~~~~~~~~~~~h~~~I~~l~fsp 567 (809)
+.+|+.||.|..=|+.+ .+.....+...++..+..+....-+-+++.|+.|+-|..+-. ..+++
T Consensus 270 vYsG~rd~~i~~Tdl~n~~~~tlick~daPv~~l~~~~~~~~~WvtTtds~I~rW~~~~~---------------~~l~~ 334 (735)
T KOG0308|consen 270 VYSGGRDGNIYRTDLRNPAKSTLICKEDAPVLKLHLHEHDNSVWVTTTDSSIKRWKLEPD---------------IALSV 334 (735)
T ss_pred EEecCCCCcEEecccCCchhheEeecCCCchhhhhhccccCCceeeeccccceecCCccc---------------ccccc
Confidence 99999999999999988 455555566688888888866665577788999988855421 14444
Q ss_pred CCCEEEEEeCCCeEEEEEcCCccEEEEeeeCcceEEEEEcCCCCeEEEEEeCCCeEEEeec
Q 003579 568 DGKWLLSSGMDGSLRIWDVILARQIDAIHVDVSITALSLSPNMDVLATAHVDQNGVYLWVN 628 (809)
Q Consensus 568 dg~~l~s~s~D~~I~vwd~~~~~~i~~~~~~~~v~~l~~spdg~~lat~~~d~~~i~lW~~ 628 (809)
.|++.. -+.|....+.+... .+-.++.+..++..-++-.|.+.++|-...|+ +.+||+
T Consensus 335 s~~~~~-~~T~~~~~~~~~~~-tp~~vi~Gg~ai~k~~mL~dkRhVlTkDa~gn-v~lwDI 392 (735)
T KOG0308|consen 335 SGDLDF-FSTDSNNHSCDLTN-TPDSVIPGGAAIKKHAMLNDKRHVLTKDAKGN-VALWDI 392 (735)
T ss_pred CCCCCc-ccccCCCccccccC-CCceeccCchhhhhhhhhcCcceEeeecCCCC-EEEEEe
Confidence 444444 22333344444321 23334444455666677777888888877774 888876
No 110
>PTZ00421 coronin; Provisional
Probab=99.95 E-value=9.3e-25 Score=235.33 Aligned_cols=164 Identities=18% Similarity=0.296 Sum_probs=139.0
Q ss_pred EEcCCCCCEEEEEEcC-CCCEEEEEeCCCeEEEEEeeCCe-------EEEEEeccCCCcEEEEEEecCCCCEEEEEcCCC
Q 003579 176 EFKGWGSSISSCVSSP-ALDVVAVGCSDGKIHVHNVRYDE-------ELVTFTHSMRGAVTALAFSSDGQPLLASGASSG 247 (809)
Q Consensus 176 ~~~~~~~~I~~l~~sp-~~~~la~g~~dg~i~iwd~~~~~-------~~~~~~~~~~~~V~~l~fs~dg~~~lasg~~dg 247 (809)
.+.+|.+.|++++|+| ++++|++|+.||+|++||+.++. .+..+..| ...|.+++|+|++..+|++|+.|+
T Consensus 70 ~l~GH~~~V~~v~fsP~d~~~LaSgS~DgtIkIWdi~~~~~~~~~~~~l~~L~gH-~~~V~~l~f~P~~~~iLaSgs~Dg 148 (493)
T PTZ00421 70 ILLGQEGPIIDVAFNPFDPQKLFTASEDGTIMGWGIPEEGLTQNISDPIVHLQGH-TKKVGIVSFHPSAMNVLASAGADM 148 (493)
T ss_pred eEeCCCCCEEEEEEcCCCCCEEEEEeCCCEEEEEecCCCccccccCcceEEecCC-CCcEEEEEeCcCCCCEEEEEeCCC
Confidence 4779999999999999 88999999999999999997653 45556554 789999999998755999999999
Q ss_pred cEEEEECCCceeeeeeecccccceEEEEEecCCCEEEEEcCCCcEEEEEeeCCCCCceeEEeccCCCCC-CeeEEEecCC
Q 003579 248 VISIWNLEKRRLQSVIREAHDNAIISLHFFANEPVLMSASADNSIKMWIFDTTDGDPRLLRFRSGHSAP-PLCIRFYANG 326 (809)
Q Consensus 248 ~I~iwdl~~~~~~~~~~~~h~~~V~~l~~~~~~~~l~s~s~d~~i~vw~~~~~~~~~~~~~~~~~h~~~-v~~i~~~~~~ 326 (809)
.|+|||+++++.+..+. +|...|.+++|+|++.+|++++.|+.|++||+... ..+....+|.+. +..+.|.+++
T Consensus 149 tVrIWDl~tg~~~~~l~-~h~~~V~sla~spdG~lLatgs~Dg~IrIwD~rsg----~~v~tl~~H~~~~~~~~~w~~~~ 223 (493)
T PTZ00421 149 VVNVWDVERGKAVEVIK-CHSDQITSLEWNLDGSLLCTTSKDKKLNIIDPRDG----TIVSSVEAHASAKSQRCLWAKRK 223 (493)
T ss_pred EEEEEECCCCeEEEEEc-CCCCceEEEEEECCCCEEEEecCCCEEEEEECCCC----cEEEEEecCCCCcceEEEEcCCC
Confidence 99999999999888887 89999999999999999999999999999998765 455666788765 3567788887
Q ss_pred CEEEEEE----CCCCEEEEEeee
Q 003579 327 RHILSAG----QDRAFRLFSVIQ 345 (809)
Q Consensus 327 ~~l~s~~----~dg~i~~wd~~~ 345 (809)
..+++++ .|+.|++||+++
T Consensus 224 ~~ivt~G~s~s~Dr~VklWDlr~ 246 (493)
T PTZ00421 224 DLIITLGCSKSQQRQIMLWDTRK 246 (493)
T ss_pred CeEEEEecCCCCCCeEEEEeCCC
Confidence 7777665 367888888653
No 111
>KOG0647 consensus mRNA export protein (contains WD40 repeats) [RNA processing and modification]
Probab=99.95 E-value=1e-25 Score=209.43 Aligned_cols=280 Identities=17% Similarity=0.227 Sum_probs=214.0
Q ss_pred CCCCCEEEEEEcC-CCCEEEEEeCCCeEEEEEeeC-CeEEEEEeccCCCcEEEEEEecCCCCEEEEEcCCCcEEEEECCC
Q 003579 179 GWGSSISSCVSSP-ALDVVAVGCSDGKIHVHNVRY-DEELVTFTHSMRGAVTALAFSSDGQPLLASGASSGVISIWNLEK 256 (809)
Q Consensus 179 ~~~~~I~~l~~sp-~~~~la~g~~dg~i~iwd~~~-~~~~~~~~~~~~~~V~~l~fs~dg~~~lasg~~dg~I~iwdl~~ 256 (809)
.....|.+++||| ...+++.|+.||+||+|++.. |..+.+....+.++|.+++|+.||. .+++|+.|+.+++||+.+
T Consensus 25 pP~DsIS~l~FSP~~~~~~~A~SWD~tVR~wevq~~g~~~~ka~~~~~~PvL~v~Wsddgs-kVf~g~~Dk~~k~wDL~S 103 (347)
T KOG0647|consen 25 PPEDSISALAFSPQADNLLAAGSWDGTVRIWEVQNSGQLVPKAQQSHDGPVLDVCWSDDGS-KVFSGGCDKQAKLWDLAS 103 (347)
T ss_pred CcccchheeEeccccCceEEecccCCceEEEEEecCCcccchhhhccCCCeEEEEEccCCc-eEEeeccCCceEEEEccC
Confidence 4468899999999 556777899999999999986 4555555556689999999999998 899999999999999999
Q ss_pred ceeeeeeecccccceEEEEEecCCC--EEEEEcCCCcEEEEEeeCCCCCceeEEeccCCCCCCeeEEEecCCCEEEEEEC
Q 003579 257 RRLQSVIREAHDNAIISLHFFANEP--VLMSASADNSIKMWIFDTTDGDPRLLRFRSGHSAPPLCIRFYANGRHILSAGQ 334 (809)
Q Consensus 257 ~~~~~~~~~~h~~~V~~l~~~~~~~--~l~s~s~d~~i~vw~~~~~~~~~~~~~~~~~h~~~v~~i~~~~~~~~l~s~~~ 334 (809)
++.... . .|.++|..+.|.+... .|+|||.|++|+.||.+... .+..+ .-.+.+.++.. ....++.+..
T Consensus 104 ~Q~~~v-~-~Hd~pvkt~~wv~~~~~~cl~TGSWDKTlKfWD~R~~~----pv~t~-~LPeRvYa~Dv--~~pm~vVata 174 (347)
T KOG0647|consen 104 GQVSQV-A-AHDAPVKTCHWVPGMNYQCLVTGSWDKTLKFWDTRSSN----PVATL-QLPERVYAADV--LYPMAVVATA 174 (347)
T ss_pred CCeeee-e-ecccceeEEEEecCCCcceeEecccccceeecccCCCC----eeeee-eccceeeehhc--cCceeEEEec
Confidence 965544 3 6999999999998776 89999999999999887553 22222 22233444433 3457888889
Q ss_pred CCCEEEEEeeecccceecchhhHHHHHhhccchhhhhccCceeEEeeccccccccceeEEeecCCceEEEEEeeeeeecc
Q 003579 335 DRAFRLFSVIQDQQSRELSQRHVAKRARKLKMKEEELKLKPVIAFDCAEIRERDWCNVVTCHMDTAQAYVWRLQNFVLGE 414 (809)
Q Consensus 335 dg~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~ 414 (809)
++.|.+|+++.+........
T Consensus 175 ~r~i~vynL~n~~te~k~~~------------------------------------------------------------ 194 (347)
T KOG0647|consen 175 ERHIAVYNLENPPTEFKRIE------------------------------------------------------------ 194 (347)
T ss_pred CCcEEEEEcCCCcchhhhhc------------------------------------------------------------
Confidence 99999999976543221100
Q ss_pred eeeecCCCCCCCeEEEEEcCCCCEEEEEeCCCcEEEEECCCCceeeeeeCccccc---ccCccccEEEEEEcCCCCEEEE
Q 003579 415 HILRPCPENPTAVKACTISACGNFAVLGTAGGWIERFNLQSGISRGSYLDMSERS---NYAHNGEVVGVACDSTNTLMIS 491 (809)
Q Consensus 415 ~~~~~~~~~~~~v~~v~~s~~g~~l~~g~~~g~i~i~~~~~~~~~~~~~~~~~~~---~~~h~~~v~~l~~~~~~~~l~s 491 (809)
....-.++|+++-++....++|+-+|.+.+..+..+.....|.-...+. ....-.+|++++|+|....|+|
T Consensus 195 ------SpLk~Q~R~va~f~d~~~~alGsiEGrv~iq~id~~~~~~nFtFkCHR~~~~~~~~VYaVNsi~FhP~hgtlvT 268 (347)
T KOG0647|consen 195 ------SPLKWQTRCVACFQDKDGFALGSIEGRVAIQYIDDPNPKDNFTFKCHRSTNSVNDDVYAVNSIAFHPVHGTLVT 268 (347)
T ss_pred ------CcccceeeEEEEEecCCceEeeeecceEEEEecCCCCccCceeEEEeccCCCCCCceEEecceEeecccceEEE
Confidence 0112678899999998888999999999999998874433332111110 0011246899999999999999
Q ss_pred EeCcCeEEEEECCCCceeeee-ecCCCeEEEEEeeCCCEEEEEe
Q 003579 492 AGYHGDIKVWDFKGRDLKSRW-EVGCSLVKIVYHRVNGLLATVA 534 (809)
Q Consensus 492 ~~~dg~i~iwd~~~~~~~~~~-~~~~~i~~~~~s~~~~~la~~~ 534 (809)
+|.||+..+||-.....+... .+..+|++.+|+.+|.++|.+.
T Consensus 269 aGsDGtf~FWDkdar~kLk~s~~~~qpItcc~fn~~G~ifaYA~ 312 (347)
T KOG0647|consen 269 AGSDGTFSFWDKDARTKLKTSETHPQPITCCSFNRNGSIFAYAL 312 (347)
T ss_pred ecCCceEEEecchhhhhhhccCcCCCccceeEecCCCCEEEEEe
Confidence 999999999998877666664 4558999999999999988774
No 112
>KOG0301 consensus Phospholipase A2-activating protein (contains WD40 repeats) [Lipid transport and metabolism]
Probab=99.95 E-value=4.9e-26 Score=233.94 Aligned_cols=242 Identities=21% Similarity=0.333 Sum_probs=205.0
Q ss_pred eEEEEccccccEEEEEE-eCCEEEEEeCCCcEEEEEcCCCccccceeeeEEcCCccccE-EEEeCCCCCCEEEEEeCCCe
Q 003579 85 QVATWSRHSAKVNLLLL-FGEHILSIDIDGNMFIWAFKGIEENLAPVGHVKLDDKFTPT-CIMHPDTYLNKVIVGSQEGS 162 (809)
Q Consensus 85 ~~~~~~~h~~~V~~l~~-~g~~l~s~~~dg~i~vWd~~~~~~~~~~~~~~~~~~~~~~~-~~~~p~~~~~~l~~~~~dg~ 162 (809)
..+.+.||+..|..+++ ++.+++++|.||++++|+-..++.. ....+..+.+++.. .++.+.. ...+++|+.|.+
T Consensus 6 ls~~l~gH~~DVr~v~~~~~~~i~s~sRd~t~~vw~~~~~~~l--~~~~~~~~~g~i~~~i~y~e~~-~~~l~~g~~D~~ 82 (745)
T KOG0301|consen 6 LSHELEGHKSDVRAVAVTDGVCIISGSRDGTVKVWAKKGKQYL--ETHAFEGPKGFIANSICYAESD-KGRLVVGGMDTT 82 (745)
T ss_pred eEEEeccCccchheeEecCCeEEeecCCCCceeeeeccCcccc--cceecccCcceeeccceecccc-CcceEeecccce
Confidence 34569999999999887 6778999999999999998766551 12334456666655 4444422 146999999999
Q ss_pred EEEEeCCCCceEEEEcCCCCCEEEEEEcCCCCEEEEEeCCCeEEEEEeeCCeEEEEEeccCCCcEEEEEEecCCCCEEEE
Q 003579 163 LQLWNISTKKKLYEFKGWGSSISSCVSSPALDVVAVGCSDGKIHVHNVRYDEELVTFTHSMRGAVTALAFSSDGQPLLAS 242 (809)
Q Consensus 163 i~lwd~~~~~~~~~~~~~~~~I~~l~~sp~~~~la~g~~dg~i~iwd~~~~~~~~~~~~~~~~~V~~l~fs~dg~~~las 242 (809)
+.+|...+..+++.+++|.+.|.|+....++. +++|+.|.++++|-. ++....+..| +..|.++++-|++. ++|
T Consensus 83 i~v~~~~~~~P~~~LkgH~snVC~ls~~~~~~-~iSgSWD~TakvW~~--~~l~~~l~gH-~asVWAv~~l~e~~--~vT 156 (745)
T KOG0301|consen 83 IIVFKLSQAEPLYTLKGHKSNVCSLSIGEDGT-LISGSWDSTAKVWRI--GELVYSLQGH-TASVWAVASLPENT--YVT 156 (745)
T ss_pred EEEEecCCCCchhhhhccccceeeeecCCcCc-eEecccccceEEecc--hhhhcccCCc-chheeeeeecCCCc--EEe
Confidence 99999999999999999999999999888876 999999999999975 5566666655 89999999999884 889
Q ss_pred EcCCCcEEEEECCCceeeeeeecccccceEEEEEecCCCEEEEEcCCCcEEEEEeeCCCCCceeEEeccCCCCCCeeEEE
Q 003579 243 GASSGVISIWNLEKRRLQSVIREAHDNAIISLHFFANEPVLMSASADNSIKMWIFDTTDGDPRLLRFRSGHSAPPLCIRF 322 (809)
Q Consensus 243 g~~dg~I~iwdl~~~~~~~~~~~~h~~~V~~l~~~~~~~~l~s~s~d~~i~vw~~~~~~~~~~~~~~~~~h~~~v~~i~~ 322 (809)
|+.|.+|++|.- ++.+.++. +|.+.|+++++.+++ .+++++.||.|+.|+++. ..+....||..-+.++..
T Consensus 157 gsaDKtIklWk~--~~~l~tf~-gHtD~VRgL~vl~~~-~flScsNDg~Ir~w~~~g-----e~l~~~~ghtn~vYsis~ 227 (745)
T KOG0301|consen 157 GSADKTIKLWKG--GTLLKTFS-GHTDCVRGLAVLDDS-HFLSCSNDGSIRLWDLDG-----EVLLEMHGHTNFVYSISM 227 (745)
T ss_pred ccCcceeeeccC--Cchhhhhc-cchhheeeeEEecCC-CeEeecCCceEEEEeccC-----ceeeeeeccceEEEEEEe
Confidence 999999999984 88888998 899999999999886 578999999999998843 467778899999999998
Q ss_pred ecCCCEEEEEECCCCEEEEEee
Q 003579 323 YANGRHILSAGQDRAFRLFSVI 344 (809)
Q Consensus 323 ~~~~~~l~s~~~dg~i~~wd~~ 344 (809)
..++..++++++|+++++|+..
T Consensus 228 ~~~~~~Ivs~gEDrtlriW~~~ 249 (745)
T KOG0301|consen 228 ALSDGLIVSTGEDRTLRIWKKD 249 (745)
T ss_pred cCCCCeEEEecCCceEEEeecC
Confidence 8888899999999999999865
No 113
>KOG0641 consensus WD40 repeat protein [General function prediction only]
Probab=99.95 E-value=4.4e-24 Score=189.83 Aligned_cols=290 Identities=20% Similarity=0.299 Sum_probs=228.1
Q ss_pred CCCEEEEEEcCCCCEEEEEeCCCeEEEEEee------CC--------eEEEEEeccCCCcEEEEEEecCCCCEEEEEcCC
Q 003579 181 GSSISSCVSSPALDVVAVGCSDGKIHVHNVR------YD--------EELVTFTHSMRGAVTALAFSSDGQPLLASGASS 246 (809)
Q Consensus 181 ~~~I~~l~~sp~~~~la~g~~dg~i~iwd~~------~~--------~~~~~~~~~~~~~V~~l~fs~dg~~~lasg~~d 246 (809)
...|.+++|+|.|.+.|+|+...+++|-... .+ ..+..-..||++.|.|.+|+|+|+ ++++|+.|
T Consensus 32 sqairav~fhp~g~lyavgsnskt~ric~yp~l~~~r~~hea~~~pp~v~~kr~khhkgsiyc~~ws~~ge-liatgsnd 110 (350)
T KOG0641|consen 32 SQAIRAVAFHPAGGLYAVGSNSKTFRICAYPALIDLRHAHEAAKQPPSVLCKRNKHHKGSIYCTAWSPCGE-LIATGSND 110 (350)
T ss_pred hhheeeEEecCCCceEEeccCCceEEEEccccccCcccccccccCCCeEEeeeccccCccEEEEEecCccC-eEEecCCC
Confidence 6789999999999999999999998876432 11 123344467799999999999999 99999999
Q ss_pred CcEEEEECCCceee-----eeeecccccceEEEEEecC----CCEEEEEcCCCcEEEEEeeCCCCCceeEEeccCCCCCC
Q 003579 247 GVISIWNLEKRRLQ-----SVIREAHDNAIISLHFFAN----EPVLMSASADNSIKMWIFDTTDGDPRLLRFRSGHSAPP 317 (809)
Q Consensus 247 g~I~iwdl~~~~~~-----~~~~~~h~~~V~~l~~~~~----~~~l~s~s~d~~i~vw~~~~~~~~~~~~~~~~~h~~~v 317 (809)
.+|++.-.+...+. ..+. -|.+.|..++|..+ +.+|++++. |..++|..+-+.+ +.+..+.||.+.|
T Consensus 111 k~ik~l~fn~dt~~~~g~dle~n-mhdgtirdl~fld~~~s~~~il~s~ga-gdc~iy~tdc~~g--~~~~a~sghtghi 186 (350)
T KOG0641|consen 111 KTIKVLPFNADTCNATGHDLEFN-MHDGTIRDLAFLDDPESGGAILASAGA-GDCKIYITDCGRG--QGFHALSGHTGHI 186 (350)
T ss_pred ceEEEEecccccccccCcceeee-ecCCceeeeEEecCCCcCceEEEecCC-CcceEEEeecCCC--CcceeecCCcccE
Confidence 99999866544221 1233 68999999999864 446777653 5566665555544 4567788999988
Q ss_pred eeEEEecCCCEEEEEECCCCEEEEEeeecccceecchhhHHHHHhhccchhhhhccCceeEEeeccccccccceeEEeec
Q 003579 318 LCIRFYANGRHILSAGQDRAFRLFSVIQDQQSRELSQRHVAKRARKLKMKEEELKLKPVIAFDCAEIRERDWCNVVTCHM 397 (809)
Q Consensus 318 ~~i~~~~~~~~l~s~~~dg~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~ 397 (809)
.++ |+-+|-.+++|++|.+|++||++-......+....
T Consensus 187 lal-yswn~~m~~sgsqdktirfwdlrv~~~v~~l~~~~----------------------------------------- 224 (350)
T KOG0641|consen 187 LAL-YSWNGAMFASGSQDKTIRFWDLRVNSCVNTLDNDF----------------------------------------- 224 (350)
T ss_pred EEE-EEecCcEEEccCCCceEEEEeeeccceeeeccCcc-----------------------------------------
Confidence 776 34478899999999999999998776655443210
Q ss_pred CCceEEEEEeeeeeecceeeecCCCCCCCeEEEEEcCCCCEEEEEeCCCcEEEEECCCCceeeeeeCcccccccCccccE
Q 003579 398 DTAQAYVWRLQNFVLGEHILRPCPENPTAVKACTISACGNFAVLGTAGGWIERFNLQSGISRGSYLDMSERSNYAHNGEV 477 (809)
Q Consensus 398 ~~~~~~~w~~~~~~~~~~~~~~~~~~~~~v~~v~~s~~g~~l~~g~~~g~i~i~~~~~~~~~~~~~~~~~~~~~~h~~~v 477 (809)
....-..+.|.++++.|.|+.+++|..|....+||++.+..++.|. .|...|
T Consensus 225 --------------------~~~glessavaav~vdpsgrll~sg~~dssc~lydirg~r~iq~f~--------phsadi 276 (350)
T KOG0641|consen 225 --------------------HDGGLESSAVAAVAVDPSGRLLASGHADSSCMLYDIRGGRMIQRFH--------PHSADI 276 (350)
T ss_pred --------------------cCCCcccceeEEEEECCCcceeeeccCCCceEEEEeeCCceeeeeC--------CCccce
Confidence 0000112679999999999999999999999999999999999985 899999
Q ss_pred EEEEEcCCCCEEEEEeCcCeEEEEECCCC-----ceeeeeecCCCeEEEEEeeCCCEEEEEeCCCeEEEEEcC
Q 003579 478 VGVACDSTNTLMISAGYHGDIKVWDFKGR-----DLKSRWEVGCSLVKIVYHRVNGLLATVADDLVIRLFDVV 545 (809)
Q Consensus 478 ~~l~~~~~~~~l~s~~~dg~i~iwd~~~~-----~~~~~~~~~~~i~~~~~s~~~~~la~~~~d~~I~v~d~~ 545 (809)
.++.|+|...++++|+.|..|++-|+... ..+..-++...+..+.|+|..-.+++.+.|.++.+|-+.
T Consensus 277 r~vrfsp~a~yllt~syd~~ikltdlqgdla~el~~~vv~ehkdk~i~~rwh~~d~sfisssadkt~tlwa~~ 349 (350)
T KOG0641|consen 277 RCVRFSPGAHYLLTCSYDMKIKLTDLQGDLAHELPIMVVAEHKDKAIQCRWHPQDFSFISSSADKTATLWALN 349 (350)
T ss_pred eEEEeCCCceEEEEecccceEEEeecccchhhcCceEEEEeccCceEEEEecCccceeeeccCcceEEEeccC
Confidence 99999999999999999999999998743 122233556788899999999999999999999999754
No 114
>KOG0772 consensus Uncharacterized conserved protein, contains WD40 repeat [Function unknown]
Probab=99.95 E-value=6.8e-26 Score=224.68 Aligned_cols=300 Identities=11% Similarity=0.174 Sum_probs=231.2
Q ss_pred ceEEEEcCCCCCEEEEEEcCCCCEEEEEeCCCeEEEEEeeCCe----EEEEEeccCCCcEEEEEEecCCCCEEEEEcCCC
Q 003579 172 KKLYEFKGWGSSISSCVSSPALDVVAVGCSDGKIHVHNVRYDE----ELVTFTHSMRGAVTALAFSSDGQPLLASGASSG 247 (809)
Q Consensus 172 ~~~~~~~~~~~~I~~l~~sp~~~~la~g~~dg~i~iwd~~~~~----~~~~~~~~~~~~V~~l~fs~dg~~~lasg~~dg 247 (809)
..-..+++|...|+++++.|.|-++++|+.|..|++||+.... ..+.+.......|.+++|++.|..+| +.+...
T Consensus 158 shEi~l~hgtk~Vsal~~Dp~GaR~~sGs~Dy~v~~wDf~gMdas~~~fr~l~P~E~h~i~sl~ys~Tg~~iL-vvsg~a 236 (641)
T KOG0772|consen 158 SHEIQLKHGTKIVSALAVDPSGARFVSGSLDYTVKFWDFQGMDASMRSFRQLQPCETHQINSLQYSVTGDQIL-VVSGSA 236 (641)
T ss_pred cceEeccCCceEEEEeeecCCCceeeeccccceEEEEecccccccchhhhccCcccccccceeeecCCCCeEE-EEecCc
Confidence 3445678899999999999999999999999999999997432 22233333345899999999998444 445567
Q ss_pred cEEEEECCCceeeeeee-----------cccccceEEEEEecCCC-EEEEEcCCCcEEEEEeeCCCCCceeEEec--cCC
Q 003579 248 VISIWNLEKRRLQSVIR-----------EAHDNAIISLHFFANEP-VLMSASADNSIKMWIFDTTDGDPRLLRFR--SGH 313 (809)
Q Consensus 248 ~I~iwdl~~~~~~~~~~-----------~~h~~~V~~l~~~~~~~-~l~s~s~d~~i~vw~~~~~~~~~~~~~~~--~~h 313 (809)
..+|+|-.........+ .+|...+++.+|+|..+ .++|++.||++|+|+++......++++.. .+.
T Consensus 237 qakl~DRdG~~~~e~~KGDQYI~Dm~nTKGHia~lt~g~whP~~k~~FlT~s~DgtlRiWdv~~~k~q~qVik~k~~~g~ 316 (641)
T KOG0772|consen 237 QAKLLDRDGFEIVEFSKGDQYIRDMYNTKGHIAELTCGCWHPDNKEEFLTCSYDGTLRIWDVNNTKSQLQVIKTKPAGGK 316 (641)
T ss_pred ceeEEccCCceeeeeeccchhhhhhhccCCceeeeeccccccCcccceEEecCCCcEEEEecCCchhheeEEeeccCCCc
Confidence 89999976554444333 37999999999999765 89999999999999998776554444433 345
Q ss_pred CCCCeeEEEecCCCEEEEEECCCCEEEEEeeecccceecchhhHHHHHhhccchhhhhccCceeEEeeccccccccceeE
Q 003579 314 SAPPLCIRFYANGRHILSAGQDRAFRLFSVIQDQQSRELSQRHVAKRARKLKMKEEELKLKPVIAFDCAEIRERDWCNVV 393 (809)
Q Consensus 314 ~~~v~~i~~~~~~~~l~s~~~dg~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~ 393 (809)
.-+++.++|++||+.|+.|..||+|.+|+.........+
T Consensus 317 Rv~~tsC~~nrdg~~iAagc~DGSIQ~W~~~~~~v~p~~----------------------------------------- 355 (641)
T KOG0772|consen 317 RVPVTSCAWNRDGKLIAAGCLDGSIQIWDKGSRTVRPVM----------------------------------------- 355 (641)
T ss_pred ccCceeeecCCCcchhhhcccCCceeeeecCCcccccce-----------------------------------------
Confidence 568899999999999999999999999997432211110
Q ss_pred EeecCCceEEEEEeeeeeecceeeecCCCCC--CCeEEEEEcCCCCEEEEEeCCCcEEEEECCCCcee-eeeeCcccccc
Q 003579 394 TCHMDTAQAYVWRLQNFVLGEHILRPCPENP--TAVKACTISACGNFAVLGTAGGWIERFNLQSGISR-GSYLDMSERSN 470 (809)
Q Consensus 394 ~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~--~~v~~v~~s~~g~~l~~g~~~g~i~i~~~~~~~~~-~~~~~~~~~~~ 470 (809)
.....|. ..|+|+.||++|++|++-+.|+.+++||+...... .....
T Consensus 356 ------------------------~vk~AH~~g~~Itsi~FS~dg~~LlSRg~D~tLKvWDLrq~kkpL~~~tg------ 405 (641)
T KOG0772|consen 356 ------------------------KVKDAHLPGQDITSISFSYDGNYLLSRGFDDTLKVWDLRQFKKPLNVRTG------ 405 (641)
T ss_pred ------------------------EeeeccCCCCceeEEEeccccchhhhccCCCceeeeeccccccchhhhcC------
Confidence 0111232 48999999999999999999999999999765432 22211
Q ss_pred cCccccEEEEEEcCCCCEEEEEe------CcCeEEEEECCCCceeeeeecC-CCeEEEEEeeCCCEEEEEeCCCeEEEEE
Q 003579 471 YAHNGEVVGVACDSTNTLMISAG------YHGDIKVWDFKGRDLKSRWEVG-CSLVKIVYHRVNGLLATVADDLVIRLFD 543 (809)
Q Consensus 471 ~~h~~~v~~l~~~~~~~~l~s~~------~dg~i~iwd~~~~~~~~~~~~~-~~i~~~~~s~~~~~la~~~~d~~I~v~d 543 (809)
.....+-+.++|+|+.+++++|. ..|.+.+||..+-+.+..+... ..+..+.|||.=+.|.+|+.||.++||-
T Consensus 406 L~t~~~~tdc~FSPd~kli~TGtS~~~~~~~g~L~f~d~~t~d~v~ki~i~~aSvv~~~WhpkLNQi~~gsgdG~~~vyY 485 (641)
T KOG0772|consen 406 LPTPFPGTDCCFSPDDKLILTGTSAPNGMTAGTLFFFDRMTLDTVYKIDISTASVVRCLWHPKLNQIFAGSGDGTAHVYY 485 (641)
T ss_pred CCccCCCCccccCCCceEEEecccccCCCCCceEEEEeccceeeEEEecCCCceEEEEeecchhhheeeecCCCceEEEE
Confidence 12234567899999999999986 3578999999999998888776 7899999999999999999999999874
No 115
>PTZ00420 coronin; Provisional
Probab=99.95 E-value=1.2e-24 Score=235.11 Aligned_cols=250 Identities=15% Similarity=0.203 Sum_probs=194.0
Q ss_pred EeCCCeEEEEeCCCCceEEEEcCCCCCEEEEEEcCC-CCEEEEEeCCCeEEEEEeeCCe--------EEEEEeccCCCcE
Q 003579 157 GSQEGSLQLWNISTKKKLYEFKGWGSSISSCVSSPA-LDVVAVGCSDGKIHVHNVRYDE--------ELVTFTHSMRGAV 227 (809)
Q Consensus 157 ~~~dg~i~lwd~~~~~~~~~~~~~~~~I~~l~~sp~-~~~la~g~~dg~i~iwd~~~~~--------~~~~~~~~~~~~V 227 (809)
|+..+.+.+|+......+..+.+|.+.|.+++|+|+ +++||+|+.||+|+|||+.++. .+..+.. |...|
T Consensus 50 GG~~gvI~L~~~~r~~~v~~L~gH~~~V~~lafsP~~~~lLASgS~DgtIrIWDi~t~~~~~~~i~~p~~~L~g-H~~~V 128 (568)
T PTZ00420 50 GGLIGAIRLENQMRKPPVIKLKGHTSSILDLQFNPCFSEILASGSEDLTIRVWEIPHNDESVKEIKDPQCILKG-HKKKI 128 (568)
T ss_pred CCceeEEEeeecCCCceEEEEcCCCCCEEEEEEcCCCCCEEEEEeCCCeEEEEECCCCCccccccccceEEeec-CCCcE
Confidence 556788999998888889999999999999999997 7899999999999999998643 2334444 47899
Q ss_pred EEEEEecCCCCEEEEEcCCCcEEEEECCCceeeeeeecccccceEEEEEecCCCEEEEEcCCCcEEEEEeeCCCCCceeE
Q 003579 228 TALAFSSDGQPLLASGASSGVISIWNLEKRRLQSVIREAHDNAIISLHFFANEPVLMSASADNSIKMWIFDTTDGDPRLL 307 (809)
Q Consensus 228 ~~l~fs~dg~~~lasg~~dg~I~iwdl~~~~~~~~~~~~h~~~V~~l~~~~~~~~l~s~s~d~~i~vw~~~~~~~~~~~~ 307 (809)
.+++|+|++..+|++++.||.|++||+++++....+. |...|.+++|+|+|.+|++++.|+.|++||+... ..+
T Consensus 129 ~sVaf~P~g~~iLaSgS~DgtIrIWDl~tg~~~~~i~--~~~~V~SlswspdG~lLat~s~D~~IrIwD~Rsg----~~i 202 (568)
T PTZ00420 129 SIIDWNPMNYYIMCSSGFDSFVNIWDIENEKRAFQIN--MPKKLSSLKWNIKGNLLSGTCVGKHMHIIDPRKQ----EIA 202 (568)
T ss_pred EEEEECCCCCeEEEEEeCCCeEEEEECCCCcEEEEEe--cCCcEEEEEECCCCCEEEEEecCCEEEEEECCCC----cEE
Confidence 9999999998677899999999999999998776665 6678999999999999999999999999998765 456
Q ss_pred EeccCCCCCCeeEE-----EecCCCEEEEEECCC----CEEEEEeeeccc-ceecchhhHHHHHhhccchhhhhccCcee
Q 003579 308 RFRSGHSAPPLCIR-----FYANGRHILSAGQDR----AFRLFSVIQDQQ-SRELSQRHVAKRARKLKMKEEELKLKPVI 377 (809)
Q Consensus 308 ~~~~~h~~~v~~i~-----~~~~~~~l~s~~~dg----~i~~wd~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~i~ 377 (809)
..+.+|.+.+.... |++++.+|++++.|+ .|++||++.... ...+.
T Consensus 203 ~tl~gH~g~~~s~~v~~~~fs~d~~~IlTtG~d~~~~R~VkLWDlr~~~~pl~~~~------------------------ 258 (568)
T PTZ00420 203 SSFHIHDGGKNTKNIWIDGLGGDDNYILSTGFSKNNMREMKLWDLKNTTSALVTMS------------------------ 258 (568)
T ss_pred EEEecccCCceeEEEEeeeEcCCCCEEEEEEcCCCCccEEEEEECCCCCCceEEEE------------------------
Confidence 67788988764433 447888999988774 799999875321 11100
Q ss_pred EEeeccccccccceeEEeecCCceEEEEEeeeeeecceeeecCCCCCCCeEEEEEcCCCCEEEEEeCCCcEEEEECCCCc
Q 003579 378 AFDCAEIRERDWCNVVTCHMDTAQAYVWRLQNFVLGEHILRPCPENPTAVKACTISACGNFAVLGTAGGWIERFNLQSGI 457 (809)
Q Consensus 378 ~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~v~~v~~s~~g~~l~~g~~~g~i~i~~~~~~~ 457 (809)
...+.+.+......++|.++++|..|+.|++|++..+.
T Consensus 259 ------------------------------------------ld~~~~~L~p~~D~~tg~l~lsGkGD~tIr~~e~~~~~ 296 (568)
T PTZ00420 259 ------------------------------------------IDNASAPLIPHYDESTGLIYLIGKGDGNCRYYQHSLGS 296 (568)
T ss_pred ------------------------------------------ecCCccceEEeeeCCCCCEEEEEECCCeEEEEEccCCc
Confidence 00111333334445678999999999999999998774
Q ss_pred eeeeeeCcccccccCccccEEEEEEcCCC
Q 003579 458 SRGSYLDMSERSNYAHNGEVVGVACDSTN 486 (809)
Q Consensus 458 ~~~~~~~~~~~~~~~h~~~v~~l~~~~~~ 486 (809)
... +. ...+..++.+++|.|..
T Consensus 297 ~~~-l~------~~~s~~p~~g~~f~Pkr 318 (568)
T PTZ00420 297 IRK-VN------EYKSCSPFRSFGFLPKQ 318 (568)
T ss_pred EEe-ec------ccccCCCccceEEcccc
Confidence 322 21 13466788899999864
No 116
>KOG0299 consensus U3 snoRNP-associated protein (contains WD40 repeats) [RNA processing and modification]
Probab=99.95 E-value=1.9e-25 Score=219.29 Aligned_cols=274 Identities=18% Similarity=0.279 Sum_probs=225.3
Q ss_pred cCCCcEEEEEEecCCCCEEEEEcCCCcEEEEECCCceee-eeee----------------cccccceEEEEEecCCCEEE
Q 003579 222 SMRGAVTALAFSSDGQPLLASGASSGVISIWNLEKRRLQ-SVIR----------------EAHDNAIISLHFFANEPVLM 284 (809)
Q Consensus 222 ~~~~~V~~l~fs~dg~~~lasg~~dg~I~iwdl~~~~~~-~~~~----------------~~h~~~V~~l~~~~~~~~l~ 284 (809)
.|.-++.+++++||++ +.++++.+|+|.-|+..+++.. ..+. .+|...+.+++.++|+++|+
T Consensus 140 ~H~~s~~~vals~d~~-~~fsask~g~i~kw~v~tgk~~~~i~~~~ev~k~~~~~~k~~r~~h~keil~~avS~Dgkyla 218 (479)
T KOG0299|consen 140 KHQLSVTSVALSPDDK-RVFSASKDGTILKWDVLTGKKDRYIIERDEVLKSHGNPLKESRKGHVKEILTLAVSSDGKYLA 218 (479)
T ss_pred cccCcceEEEeecccc-ceeecCCCcceeeeehhcCcccccccccchhhhhccCCCCcccccccceeEEEEEcCCCcEEE
Confidence 3478899999999999 8899999999999999888633 1111 16888999999999999999
Q ss_pred EEcCCCcEEEEEeeCCCCCceeEEeccCCCCCCeeEEEecCCCEEEEEECCCCEEEEEeeecccceecchhhHHHHHhhc
Q 003579 285 SASADNSIKMWIFDTTDGDPRLLRFRSGHSAPPLCIRFYANGRHILSAGQDRAFRLFSVIQDQQSRELSQRHVAKRARKL 364 (809)
Q Consensus 285 s~s~d~~i~vw~~~~~~~~~~~~~~~~~h~~~v~~i~~~~~~~~l~s~~~dg~i~~wd~~~~~~~~~~~~~~~~~~~~~~ 364 (809)
+|+.|..|.||+.++. ..+..+.+|.+.|.+++|......+++++.|+++++|++.......+
T Consensus 219 tgg~d~~v~Iw~~~t~----ehv~~~~ghr~~V~~L~fr~gt~~lys~s~Drsvkvw~~~~~s~vet------------- 281 (479)
T KOG0299|consen 219 TGGRDRHVQIWDCDTL----EHVKVFKGHRGAVSSLAFRKGTSELYSASADRSVKVWSIDQLSYVET------------- 281 (479)
T ss_pred ecCCCceEEEecCccc----chhhcccccccceeeeeeecCccceeeeecCCceEEEehhHhHHHHH-------------
Confidence 9999999999998877 45666889999999999999888999999999999999754322211
Q ss_pred cchhhhhccCceeEEeeccccccccceeEEeecCCceEEEEEeeeeeecceeeecCCCCCCCeEEEEEcCCCCEEEEEeC
Q 003579 365 KMKEEELKLKPVIAFDCAEIRERDWCNVVTCHMDTAQAYVWRLQNFVLGEHILRPCPENPTAVKACTISACGNFAVLGTA 444 (809)
Q Consensus 365 ~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~v~~v~~s~~g~~l~~g~~ 444 (809)
T Consensus 282 -------------------------------------------------------------------------------- 281 (479)
T KOG0299|consen 282 -------------------------------------------------------------------------------- 281 (479)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred CCcEEEEECCCCceeeeeeCcccccccCccccEEEEEEcCCCCEEEEEeCcCeEEEEECCCCceeeeeecCCCeEEEEEe
Q 003579 445 GGWIERFNLQSGISRGSYLDMSERSNYAHNGEVVGVACDSTNTLMISAGYHGDIKVWDFKGRDLKSRWEVGCSLVKIVYH 524 (809)
Q Consensus 445 ~g~i~i~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~i~~~~~s 524 (809)
+++|...|.++.....++.+-+++.|+++++|++.....+--..+.+.+-|++|-
T Consensus 282 -------------------------lyGHqd~v~~IdaL~reR~vtVGgrDrT~rlwKi~eesqlifrg~~~sidcv~~I 336 (479)
T KOG0299|consen 282 -------------------------LYGHQDGVLGIDALSRERCVTVGGRDRTVRLWKIPEESQLIFRGGEGSIDCVAFI 336 (479)
T ss_pred -------------------------HhCCccceeeechhcccceEEeccccceeEEEeccccceeeeeCCCCCeeeEEEe
Confidence 2489999999999888888888889999999999655444444445788999987
Q ss_pred eCCCEEEEEeCCCeEEEEEcCCCeEEEEEec-C-----------CCCeeeEEECCCCCEEEEEeCCCeEEEEEcCCc---
Q 003579 525 RVNGLLATVADDLVIRLFDVVALRMVRKFEG-H-----------TDRITDFCFSEDGKWLLSSGMDGSLRIWDVILA--- 589 (809)
Q Consensus 525 ~~~~~la~~~~d~~I~v~d~~~~~~~~~~~~-h-----------~~~I~~l~fspdg~~l~s~s~D~~I~vwd~~~~--- 589 (809)
. ...+++|++||.|.+|++.+.+++.+..- | ...|++++..|...++++||.+|.||+|-+.+|
T Consensus 337 n-~~HfvsGSdnG~IaLWs~~KKkplf~~~~AHgv~~~~~~~~~~~Witsla~i~~sdL~asGS~~G~vrLW~i~~g~r~ 415 (479)
T KOG0299|consen 337 N-DEHFVSGSDNGSIALWSLLKKKPLFTSRLAHGVIPELDPVNGNFWITSLAVIPGSDLLASGSWSGCVRLWKIEDGLRA 415 (479)
T ss_pred c-ccceeeccCCceEEEeeecccCceeEeeccccccCCccccccccceeeeEecccCceEEecCCCCceEEEEecCCccc
Confidence 6 45688999999999999999888776541 2 227999999999999999999999999999988
Q ss_pred -cEEEEeeeCcceEEEEEcCCCCeEEEEEeC
Q 003579 590 -RQIDAIHVDVSITALSLSPNMDVLATAHVD 619 (809)
Q Consensus 590 -~~i~~~~~~~~v~~l~~spdg~~lat~~~d 619 (809)
+++..+....-|++++|+++|++|+++...
T Consensus 416 i~~l~~ls~~GfVNsl~f~~sgk~ivagiGk 446 (479)
T KOG0299|consen 416 INLLYSLSLVGFVNSLAFSNSGKRIVAGIGK 446 (479)
T ss_pred cceeeecccccEEEEEEEccCCCEEEEeccc
Confidence 455555556669999999999977766443
No 117
>KOG0639 consensus Transducin-like enhancer of split protein (contains WD40 repeats) [Chromatin structure and dynamics]
Probab=99.95 E-value=1.9e-26 Score=227.60 Aligned_cols=284 Identities=13% Similarity=0.243 Sum_probs=242.9
Q ss_pred ccccceEEEEEecCCCEEEEEcCCCcEEEEEeeCCCCCceeEEecc--CCCCCCeeEEEecCCCEEEEEECCCCEEEEEe
Q 003579 266 AHDNAIISLHFFANEPVLMSASADNSIKMWIFDTTDGDPRLLRFRS--GHSAPPLCIRFYANGRHILSAGQDRAFRLFSV 343 (809)
Q Consensus 266 ~h~~~V~~l~~~~~~~~l~s~s~d~~i~vw~~~~~~~~~~~~~~~~--~h~~~v~~i~~~~~~~~l~s~~~dg~i~~wd~ 343 (809)
+|..-|.++..+...+.++||+. |.|+|||+....... .+..+. ...+.+.++...|||+.|++|+.-.++.+||+
T Consensus 417 ~HGEvVcAvtIS~~trhVyTgGk-gcVKVWdis~pg~k~-PvsqLdcl~rdnyiRSckL~pdgrtLivGGeastlsiWDL 494 (705)
T KOG0639|consen 417 AHGEVVCAVTISNPTRHVYTGGK-GCVKVWDISQPGNKS-PVSQLDCLNRDNYIRSCKLLPDGRTLIVGGEASTLSIWDL 494 (705)
T ss_pred ccCcEEEEEEecCCcceeEecCC-CeEEEeeccCCCCCC-ccccccccCcccceeeeEecCCCceEEeccccceeeeeec
Confidence 68889999999999999999885 789999997663322 222211 23457889999999999999999999999999
Q ss_pred eecccceecchhhHHHHHhhccchhhhhccCceeEEeeccccccccceeEEeecCCceEEEEEeeeeeecceeeecCCCC
Q 003579 344 IQDQQSRELSQRHVAKRARKLKMKEEELKLKPVIAFDCAEIRERDWCNVVTCHMDTAQAYVWRLQNFVLGEHILRPCPEN 423 (809)
Q Consensus 344 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~ 423 (809)
........... ...
T Consensus 495 AapTprikael------------------------------------------------------------------tss 508 (705)
T KOG0639|consen 495 AAPTPRIKAEL------------------------------------------------------------------TSS 508 (705)
T ss_pred cCCCcchhhhc------------------------------------------------------------------CCc
Confidence 76543221100 001
Q ss_pred CCCeEEEEEcCCCCEEEEEeCCCcEEEEECCCCceeeeeeCcccccccCccccEEEEEEcCCCCEEEEEeCcCeEEEEEC
Q 003579 424 PTAVKACTISACGNFAVLGTAGGWIERFNLQSGISRGSYLDMSERSNYAHNGEVVGVACDSTNTLMISAGYHGDIKVWDF 503 (809)
Q Consensus 424 ~~~v~~v~~s~~g~~l~~g~~~g~i~i~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~l~s~~~dg~i~iwd~ 503 (809)
.....+++++||.+..+.+.+||.|.+||+.+...++.|. +|...+.|+.++++|..|-+|+.|.+||.||+
T Consensus 509 apaCyALa~spDakvcFsccsdGnI~vwDLhnq~~Vrqfq--------GhtDGascIdis~dGtklWTGGlDntvRcWDl 580 (705)
T KOG0639|consen 509 APACYALAISPDAKVCFSCCSDGNIAVWDLHNQTLVRQFQ--------GHTDGASCIDISKDGTKLWTGGLDNTVRCWDL 580 (705)
T ss_pred chhhhhhhcCCccceeeeeccCCcEEEEEcccceeeeccc--------CCCCCceeEEecCCCceeecCCCccceeehhh
Confidence 1346678999999999999999999999999999999986 99999999999999999999999999999999
Q ss_pred CCCceeeeeecCCCeEEEEEeeCCCEEEEEeCCCeEEEEEcCCCeEEEEEecCCCCeeeEEECCCCCEEEEEeCCCeEEE
Q 003579 504 KGRDLKSRWEVGCSLVKIVYHRVNGLLATVADDLVIRLFDVVALRMVRKFEGHTDRITDFCFSEDGKWLLSSGMDGSLRI 583 (809)
Q Consensus 504 ~~~~~~~~~~~~~~i~~~~~s~~~~~la~~~~d~~I~v~d~~~~~~~~~~~~h~~~I~~l~fspdg~~l~s~s~D~~I~v 583 (809)
+++..+...+..+.|.++.++|.+.+||+|..++.+.|..... .....+.-|...|.++.|++.|+|+++.+.|..+..
T Consensus 581 regrqlqqhdF~SQIfSLg~cP~~dWlavGMens~vevlh~sk-p~kyqlhlheScVLSlKFa~cGkwfvStGkDnlLna 659 (705)
T KOG0639|consen 581 REGRQLQQHDFSSQIFSLGYCPTGDWLAVGMENSNVEVLHTSK-PEKYQLHLHESCVLSLKFAYCGKWFVSTGKDNLLNA 659 (705)
T ss_pred hhhhhhhhhhhhhhheecccCCCccceeeecccCcEEEEecCC-ccceeecccccEEEEEEecccCceeeecCchhhhhh
Confidence 9999999999999999999999999999999999999987654 345566779999999999999999999999999999
Q ss_pred EEcCCccEEEEeeeCcceEEEEEcCCCCeEEEEEeCCCeEEEee
Q 003579 584 WDVILARQIDAIHVDVSITALSLSPNMDVLATAHVDQNGVYLWV 627 (809)
Q Consensus 584 wd~~~~~~i~~~~~~~~v~~l~~spdg~~lat~~~d~~~i~lW~ 627 (809)
|..+-|..+...+..++|.++.+|.|.+|++|++.|.. -.+|.
T Consensus 660 wrtPyGasiFqskE~SsVlsCDIS~ddkyIVTGSGdkk-ATVYe 702 (705)
T KOG0639|consen 660 WRTPYGASIFQSKESSSVLSCDISFDDKYIVTGSGDKK-ATVYE 702 (705)
T ss_pred ccCccccceeeccccCcceeeeeccCceEEEecCCCcc-eEEEE
Confidence 99999999998888889999999999999999999964 55554
No 118
>KOG1274 consensus WD40 repeat protein [General function prediction only]
Probab=99.95 E-value=6.3e-25 Score=232.98 Aligned_cols=277 Identities=14% Similarity=0.318 Sum_probs=228.9
Q ss_pred cccccceEEEEEecCCCEEEEEcCCCcEEEEEeeCCCCCceeEEeccCCCCCCeeEEEecCCCEEEEEECCCCEEEEEee
Q 003579 265 EAHDNAIISLHFFANEPVLMSASADNSIKMWIFDTTDGDPRLLRFRSGHSAPPLCIRFYANGRHILSAGQDRAFRLFSVI 344 (809)
Q Consensus 265 ~~h~~~V~~l~~~~~~~~l~s~s~d~~i~vw~~~~~~~~~~~~~~~~~h~~~v~~i~~~~~~~~l~s~~~dg~i~~wd~~ 344 (809)
.+|..+.+.++|.|+|.+|++++.||.|++|+.......|+.+. .+...|.+++.. +.+|++|+.+++|.+|.+.
T Consensus 10 yaht~G~t~i~~d~~gefi~tcgsdg~ir~~~~~sd~e~P~ti~---~~g~~v~~ia~~--s~~f~~~s~~~tv~~y~fp 84 (933)
T KOG1274|consen 10 YAHTGGLTLICYDPDGEFICTCGSDGDIRKWKTNSDEEEPETID---ISGELVSSIACY--SNHFLTGSEQNTVLRYKFP 84 (933)
T ss_pred hhccCceEEEEEcCCCCEEEEecCCCceEEeecCCcccCCchhh---ccCceeEEEeec--ccceEEeeccceEEEeeCC
Confidence 48999999999999999999999999999997665533444432 267777777765 5599999999999999876
Q ss_pred ecccceecchhhHHHHHhhccchhhhhccCceeEEeeccccccccceeEEeecCCceEEEEEeeeeeecceeeecCCCCC
Q 003579 345 QDQQSRELSQRHVAKRARKLKMKEEELKLKPVIAFDCAEIRERDWCNVVTCHMDTAQAYVWRLQNFVLGEHILRPCPENP 424 (809)
Q Consensus 345 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~ 424 (809)
.+..-..+. ...
T Consensus 85 s~~~~~iL~--------------------------------------------------------------------Rft 96 (933)
T KOG1274|consen 85 SGEEDTILA--------------------------------------------------------------------RFT 96 (933)
T ss_pred CCCccceee--------------------------------------------------------------------eee
Confidence 554322111 112
Q ss_pred CCeEEEEEcCCCCEEEEEeCCCcEEEEECCCCceeeeeeCcccccccCccccEEEEEEcCCCCEEEEEeCcCeEEEEECC
Q 003579 425 TAVKACTISACGNFAVLGTAGGWIERFNLQSGISRGSYLDMSERSNYAHNGEVVGVACDSTNTLMISAGYHGDIKVWDFK 504 (809)
Q Consensus 425 ~~v~~v~~s~~g~~l~~g~~~g~i~i~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~l~s~~~dg~i~iwd~~ 504 (809)
.+++.++++.+|++++.|+.|-.|++.++........+. +|.++|.++.++|.+.+||+.+-||.|++||+.
T Consensus 97 lp~r~~~v~g~g~~iaagsdD~~vK~~~~~D~s~~~~lr--------gh~apVl~l~~~p~~~fLAvss~dG~v~iw~~~ 168 (933)
T KOG1274|consen 97 LPIRDLAVSGSGKMIAAGSDDTAVKLLNLDDSSQEKVLR--------GHDAPVLQLSYDPKGNFLAVSSCDGKVQIWDLQ 168 (933)
T ss_pred ccceEEEEecCCcEEEeecCceeEEEEeccccchheeec--------ccCCceeeeeEcCCCCEEEEEecCceEEEEEcc
Confidence 688999999999999999999999999999998888876 999999999999999999999999999999999
Q ss_pred CCceeeeeec---------CCCeEEEEEeeCCCEEEEEeCCCeEEEEEcCCCeEEEEEec--CCCCeeeEEECCCCCEEE
Q 003579 505 GRDLKSRWEV---------GCSLVKIVYHRVNGLLATVADDLVIRLFDVVALRMVRKFEG--HTDRITDFCFSEDGKWLL 573 (809)
Q Consensus 505 ~~~~~~~~~~---------~~~i~~~~~s~~~~~la~~~~d~~I~v~d~~~~~~~~~~~~--h~~~I~~l~fspdg~~l~ 573 (809)
++.+..++.. ...+..++|+|+|..+|+.+.|+.|.+|+..+++....+.. |...+.+++|||.|+|||
T Consensus 169 ~~~~~~tl~~v~k~n~~~~s~i~~~~aW~Pk~g~la~~~~d~~Vkvy~r~~we~~f~Lr~~~~ss~~~~~~wsPnG~YiA 248 (933)
T KOG1274|consen 169 DGILSKTLTGVDKDNEFILSRICTRLAWHPKGGTLAVPPVDNTVKVYSRKGWELQFKLRDKLSSSKFSDLQWSPNGKYIA 248 (933)
T ss_pred cchhhhhcccCCccccccccceeeeeeecCCCCeEEeeccCCeEEEEccCCceeheeecccccccceEEEEEcCCCcEEe
Confidence 9987776642 25677899999999999999999999999999998888775 445599999999999999
Q ss_pred EEeCCCeEEEEEcCCccEEEEeeeCcceEEEEEcCCCCeEEEEEeCCCeEEEe
Q 003579 574 SSGMDGSLRIWDVILARQIDAIHVDVSITALSLSPNMDVLATAHVDQNGVYLW 626 (809)
Q Consensus 574 s~s~D~~I~vwd~~~~~~i~~~~~~~~v~~l~~spdg~~lat~~~d~~~i~lW 626 (809)
+++.||.|.|||+++ ...-.....|++++|.|++.-+-.....+ ...+|
T Consensus 249 As~~~g~I~vWnv~t---~~~~~~~~~Vc~~aw~p~~n~it~~~~~g-~~~~~ 297 (933)
T KOG1274|consen 249 ASTLDGQILVWNVDT---HERHEFKRAVCCEAWKPNANAITLITALG-TLGVS 297 (933)
T ss_pred eeccCCcEEEEeccc---chhccccceeEEEecCCCCCeeEEEeecc-ccccC
Confidence 999999999999998 22222334599999999998776666555 24444
No 119
>KOG0300 consensus WD40 repeat-containing protein [Function unknown]
Probab=99.94 E-value=5.7e-26 Score=211.70 Aligned_cols=296 Identities=14% Similarity=0.249 Sum_probs=244.9
Q ss_pred eeeEEcCCccccEEEEeCCCCCCEEEEEeCCCeEEEEeCCCCceEEEEcCCCCCEEEEEEcCCCCEEEEEeCCCeEEEEE
Q 003579 130 VGHVKLDDKFTPTCIMHPDTYLNKVIVGSQEGSLQLWNISTKKKLYEFKGWGSSISSCVSSPALDVVAVGCSDGKIHVHN 209 (809)
Q Consensus 130 ~~~~~~~~~~~~~~~~~p~~~~~~l~~~~~dg~i~lwd~~~~~~~~~~~~~~~~I~~l~~sp~~~~la~g~~dg~i~iwd 209 (809)
++.+..|...+..++..... +.+.+++.|.+-+||.+++|+++.++.||.+.|.++.|++.+.++++++.|++.+||.
T Consensus 141 vre~~GHkDGiW~Vaa~~tq--pi~gtASADhTA~iWs~Esg~CL~~Y~GH~GSVNsikfh~s~~L~lTaSGD~taHIW~ 218 (481)
T KOG0300|consen 141 VRELEGHKDGIWHVAADSTQ--PICGTASADHTARIWSLESGACLATYTGHTGSVNSIKFHNSGLLLLTASGDETAHIWK 218 (481)
T ss_pred hhhhcccccceeeehhhcCC--cceeecccccceeEEeeccccceeeecccccceeeEEeccccceEEEccCCcchHHHH
Confidence 55666777777666655555 6788999999999999999999999999999999999999999999999999999997
Q ss_pred e------eC-----------------------------C-----eEEEEEeccCCCcEEEEEEecCCCCEEEEEcCCCcE
Q 003579 210 V------RY-----------------------------D-----EELVTFTHSMRGAVTALAFSSDGQPLLASGASSGVI 249 (809)
Q Consensus 210 ~------~~-----------------------------~-----~~~~~~~~~~~~~V~~l~fs~dg~~~lasg~~dg~I 249 (809)
. .. + .+++.+.+| .+.|.+..|...|+ .+++++.|.+-
T Consensus 219 ~av~~~vP~~~a~~~hSsEeE~e~sDe~~~d~d~~~~sD~~tiRvPl~~ltgH-~~vV~a~dWL~gg~-Q~vTaSWDRTA 296 (481)
T KOG0300|consen 219 AAVNWEVPSNNAPSDHSSEEEEEHSDEHNRDTDSSEKSDGHTIRVPLMRLTGH-RAVVSACDWLAGGQ-QMVTASWDRTA 296 (481)
T ss_pred HhhcCcCCCCCCCCCCCchhhhhcccccccccccccccCCceeeeeeeeeecc-ccceEehhhhcCcc-eeeeeeccccc
Confidence 2 10 0 134556554 88999999999888 89999999999
Q ss_pred EEEECCCceeeeeeecccccceEEEEEecCCCEEEEEcCCCcEEEEEeeCCCCCceeEEeccCCCCCCeeEEEecCCCEE
Q 003579 250 SIWNLEKRRLQSVIREAHDNAIISLHFFANEPVLMSASADNSIKMWIFDTTDGDPRLLRFRSGHSAPPLCIRFYANGRHI 329 (809)
Q Consensus 250 ~iwdl~~~~~~~~~~~~h~~~V~~l~~~~~~~~l~s~s~d~~i~vw~~~~~~~~~~~~~~~~~h~~~v~~i~~~~~~~~l 329 (809)
.+||++++.++..+. +|....+.++-+|.++++++++.|.+.++|||...- ..+..+.||...|+++.|..+. .+
T Consensus 297 nlwDVEtge~v~~Lt-GHd~ELtHcstHptQrLVvTsSrDtTFRLWDFReaI---~sV~VFQGHtdtVTS~vF~~dd-~v 371 (481)
T KOG0300|consen 297 NLWDVETGEVVNILT-GHDSELTHCSTHPTQRLVVTSSRDTTFRLWDFREAI---QSVAVFQGHTDTVTSVVFNTDD-RV 371 (481)
T ss_pred eeeeeccCceecccc-CcchhccccccCCcceEEEEeccCceeEeccchhhc---ceeeeecccccceeEEEEecCC-ce
Confidence 999999999999998 999999999999999999999999999999998442 4567788999999999999765 68
Q ss_pred EEEECCCCEEEEEeeecccceecchhhHHHHHhhccchhhhhccCceeEEeeccccccccceeEEeecCCceEEEEEeee
Q 003579 330 LSAGQDRAFRLFSVIQDQQSRELSQRHVAKRARKLKMKEEELKLKPVIAFDCAEIRERDWCNVVTCHMDTAQAYVWRLQN 409 (809)
Q Consensus 330 ~s~~~dg~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~ 409 (809)
++|+.|.++++||+++...... .+
T Consensus 372 VSgSDDrTvKvWdLrNMRsplA--------------------------TI------------------------------ 395 (481)
T KOG0300|consen 372 VSGSDDRTVKVWDLRNMRSPLA--------------------------TI------------------------------ 395 (481)
T ss_pred eecCCCceEEEeeeccccCcce--------------------------ee------------------------------
Confidence 9999999999999976532110 00
Q ss_pred eeecceeeecCCCCCCCeEEEEEcCCCCEEEEEeCCCcEEEEECCCCceeeeeeCcccccccCccccEEEEEEcCCC--C
Q 003579 410 FVLGEHILRPCPENPTAVKACTISACGNFAVLGTAGGWIERFNLQSGISRGSYLDMSERSNYAHNGEVVGVACDSTN--T 487 (809)
Q Consensus 410 ~~~~~~~~~~~~~~~~~v~~v~~s~~g~~l~~g~~~g~i~i~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~--~ 487 (809)
...+++..++++..+..+++-..+..|++||+......... ...-.+|...|+|.+|..+. .
T Consensus 396 ------------RtdS~~NRvavs~g~~iIAiPhDNRqvRlfDlnG~RlaRlP----rtsRqgHrRMV~c~AW~eehp~c 459 (481)
T KOG0300|consen 396 ------------RTDSPANRVAVSKGHPIIAIPHDNRQVRLFDLNGNRLARLP----RTSRQGHRRMVTCCAWLEEHPAC 459 (481)
T ss_pred ------------ecCCccceeEeecCCceEEeccCCceEEEEecCCCccccCC----cccccccceeeeeeeccccCccc
Confidence 01267888999999999999999999999999866543322 11225899999999997543 4
Q ss_pred EEEEEeCcCeEEEEECCCC
Q 003579 488 LMISAGYHGDIKVWDFKGR 506 (809)
Q Consensus 488 ~l~s~~~dg~i~iwd~~~~ 506 (809)
-|++||.|..+.-|.+...
T Consensus 460 nLftcGFDR~v~gW~in~p 478 (481)
T KOG0300|consen 460 NLFTCGFDRMVAGWKINTP 478 (481)
T ss_pred ccccccccceeeeeEeccc
Confidence 5889999999999998754
No 120
>KOG1445 consensus Tumor-specific antigen (contains WD repeats) [Cytoskeleton]
Probab=99.94 E-value=6.2e-25 Score=222.54 Aligned_cols=168 Identities=16% Similarity=0.240 Sum_probs=131.0
Q ss_pred eEEEEcCCCCCEEEEEEcCC-CCEEEEEeCCCeEEEEEeeCCeEEE-----EEeccCCCcEEEEEEecCCCCEEEEEcCC
Q 003579 173 KLYEFKGWGSSISSCVSSPA-LDVVAVGCSDGKIHVHNVRYDEELV-----TFTHSMRGAVTALAFSSDGQPLLASGASS 246 (809)
Q Consensus 173 ~~~~~~~~~~~I~~l~~sp~-~~~la~g~~dg~i~iwd~~~~~~~~-----~~~~~~~~~V~~l~fs~dg~~~lasg~~d 246 (809)
.+-.+.+|...|+.+.|+|- ..+||+++.|..|+||.+..|-... ....+..-.|.++.|+|....+|+++. .
T Consensus 71 ~i~~l~~H~d~VtDl~FspF~D~LLAT~S~D~~VKiW~lp~g~~q~LSape~~~g~~~~~vE~l~fHpTaDgil~s~a-~ 149 (1012)
T KOG1445|consen 71 DIGILAAHGDQVTDLGFSPFADELLATCSRDEPVKIWKLPRGHSQKLSAPEIDVGGGNVIVECLRFHPTADGILASGA-H 149 (1012)
T ss_pred ccceeecccceeeccCccccchhhhhcccCCCeeEEEecCCCcccccCCcceeecCCceEEEEeecccCcCceEEecc-C
Confidence 45567899999999999994 4589999999999999998443211 112333568999999998776788765 6
Q ss_pred CcEEEEECCCceeeeeeecccccceEEEEEecCCCEEEEEcCCCcEEEEEeeCCCCCceeEEeccCCCCC-CeeEEEecC
Q 003579 247 GVISIWNLEKRRLQSVIREAHDNAIISLHFFANEPVLMSASADNSIKMWIFDTTDGDPRLLRFRSGHSAP-PLCIRFYAN 325 (809)
Q Consensus 247 g~I~iwdl~~~~~~~~~~~~h~~~V~~l~~~~~~~~l~s~s~d~~i~vw~~~~~~~~~~~~~~~~~h~~~-v~~i~~~~~ 325 (809)
|.++|||+.+++.+..+. +|...|.+..|+.||.+|++++.|+.|+|||-.... +.++...+|.+. =..+.|..+
T Consensus 150 g~v~i~D~stqk~~~el~-~h~d~vQSa~WseDG~llatscKdkqirifDPRa~~---~piQ~te~H~~~rdsRv~w~Gn 225 (1012)
T KOG1445|consen 150 GSVYITDISTQKTAVELS-GHTDKVQSADWSEDGKLLATSCKDKQIRIFDPRASM---EPIQTTEGHGGMRDSRVLWAGN 225 (1012)
T ss_pred ceEEEEEcccCceeeccc-CCchhhhccccccCCceEeeecCCcceEEeCCccCC---Cccccccccccchhheeeeccc
Confidence 899999999999999998 999999999999999999999999999999766543 455555777653 235667766
Q ss_pred CCEEEEEECC----CCEEEEEeee
Q 003579 326 GRHILSAGQD----RAFRLFSVIQ 345 (809)
Q Consensus 326 ~~~l~s~~~d----g~i~~wd~~~ 345 (809)
-..|++.+.+ +.+++||++.
T Consensus 226 ~~rlisTGF~~~R~reV~~~Dtr~ 249 (1012)
T KOG1445|consen 226 WERLISTGFTTKRIREVRAYDTRK 249 (1012)
T ss_pred hhhhhhcccchhhheeeeeeeccc
Confidence 6677776644 4677888654
No 121
>PTZ00421 coronin; Provisional
Probab=99.94 E-value=2.3e-24 Score=232.24 Aligned_cols=233 Identities=12% Similarity=0.180 Sum_probs=185.8
Q ss_pred EEccccccEEEEEE---eCCEEEEEeCCCcEEEEEcCCCcc---ccceeeeEEcCCccccEEEEeCCCCCCEEEEEeCCC
Q 003579 88 TWSRHSAKVNLLLL---FGEHILSIDIDGNMFIWAFKGIEE---NLAPVGHVKLDDKFTPTCIMHPDTYLNKVIVGSQEG 161 (809)
Q Consensus 88 ~~~~h~~~V~~l~~---~g~~l~s~~~dg~i~vWd~~~~~~---~~~~~~~~~~~~~~~~~~~~~p~~~~~~l~~~~~dg 161 (809)
.+.||.+.|.++.| ++++|++++.|++|++||+.+... ...++..+..|...+..+.|+|++. +.|++|+.|+
T Consensus 70 ~l~GH~~~V~~v~fsP~d~~~LaSgS~DgtIkIWdi~~~~~~~~~~~~l~~L~gH~~~V~~l~f~P~~~-~iLaSgs~Dg 148 (493)
T PTZ00421 70 ILLGQEGPIIDVAFNPFDPQKLFTASEDGTIMGWGIPEEGLTQNISDPIVHLQGHTKKVGIVSFHPSAM-NVLASAGADM 148 (493)
T ss_pred eEeCCCCCEEEEEEcCCCCCEEEEEeCCCEEEEEecCCCccccccCcceEEecCCCCcEEEEEeCcCCC-CEEEEEeCCC
Confidence 37899999999997 467999999999999999987532 1224566777888888899999853 6899999999
Q ss_pred eEEEEeCCCCceEEEEcCCCCCEEEEEEcCCCCEEEEEeCCCeEEEEEeeCCeEEEEEeccCCCcEEEEEEecCCCCEEE
Q 003579 162 SLQLWNISTKKKLYEFKGWGSSISSCVSSPALDVVAVGCSDGKIHVHNVRYDEELVTFTHSMRGAVTALAFSSDGQPLLA 241 (809)
Q Consensus 162 ~i~lwd~~~~~~~~~~~~~~~~I~~l~~sp~~~~la~g~~dg~i~iwd~~~~~~~~~~~~~~~~~V~~l~fs~dg~~~la 241 (809)
+|++||+++++.+..+.+|...|.+++|+|++++|++++.||.|++||+++++.+..+..+....+..+.|.+++..++.
T Consensus 149 tVrIWDl~tg~~~~~l~~h~~~V~sla~spdG~lLatgs~Dg~IrIwD~rsg~~v~tl~~H~~~~~~~~~w~~~~~~ivt 228 (493)
T PTZ00421 149 VVNVWDVERGKAVEVIKCHSDQITSLEWNLDGSLLCTTSKDKKLNIIDPRDGTIVSSVEAHASAKSQRCLWAKRKDLIIT 228 (493)
T ss_pred EEEEEECCCCeEEEEEcCCCCceEEEEEECCCCEEEEecCCCEEEEEECCCCcEEEEEecCCCCcceEEEEcCCCCeEEE
Confidence 99999999999999999999999999999999999999999999999999999998887764445667889998874444
Q ss_pred EE---cCCCcEEEEECCCce-eeeeeecccccceEEEEEecCCCEEEEEc-CCCcEEEEEeeCCCCCceeEEe-ccCCCC
Q 003579 242 SG---ASSGVISIWNLEKRR-LQSVIREAHDNAIISLHFFANEPVLMSAS-ADNSIKMWIFDTTDGDPRLLRF-RSGHSA 315 (809)
Q Consensus 242 sg---~~dg~I~iwdl~~~~-~~~~~~~~h~~~V~~l~~~~~~~~l~s~s-~d~~i~vw~~~~~~~~~~~~~~-~~~h~~ 315 (809)
+| +.|+.|++||+++.. ........+...+....|++++.+|++++ .|+.|++|++.... +... ...+..
T Consensus 229 ~G~s~s~Dr~VklWDlr~~~~p~~~~~~d~~~~~~~~~~d~d~~~L~lggkgDg~Iriwdl~~~~----~~~~~~~~s~~ 304 (493)
T PTZ00421 229 LGCSKSQQRQIMLWDTRKMASPYSTVDLDQSSALFIPFFDEDTNLLYIGSKGEGNIRCFELMNER----LTFCSSYSSVE 304 (493)
T ss_pred EecCCCCCCeEEEEeCCCCCCceeEeccCCCCceEEEEEcCCCCEEEEEEeCCCeEEEEEeeCCc----eEEEeeccCCC
Confidence 44 247999999998764 33333322344566778899999999887 59999999997653 2222 234556
Q ss_pred CCeeEEEecC
Q 003579 316 PPLCIRFYAN 325 (809)
Q Consensus 316 ~v~~i~~~~~ 325 (809)
++..++|.|.
T Consensus 305 ~~~g~~~~pk 314 (493)
T PTZ00421 305 PHKGLCMMPK 314 (493)
T ss_pred CCcceEeccc
Confidence 7788888874
No 122
>KOG1036 consensus Mitotic spindle checkpoint protein BUB3, WD repeat superfamily [Cell cycle control, cell division, chromosome partitioning]
Probab=99.94 E-value=1.2e-24 Score=203.50 Aligned_cols=273 Identities=15% Similarity=0.258 Sum_probs=220.9
Q ss_pred EEeccCCCcEEEEEEecCCCCEEEEEcCCCcEEEEECCCceeeeeeecccccceEEEEEecCCCEEEEEcCCCcEEEEEe
Q 003579 218 TFTHSMRGAVTALAFSSDGQPLLASGASSGVISIWNLEKRRLQSVIREAHDNAIISLHFFANEPVLMSASADNSIKMWIF 297 (809)
Q Consensus 218 ~~~~~~~~~V~~l~fs~dg~~~lasg~~dg~I~iwdl~~~~~~~~~~~~h~~~V~~l~~~~~~~~l~s~s~d~~i~vw~~ 297 (809)
.+.......|+++.|+|.+. .|++++.||.+++||.....+...+. |..++.+++|.+ ...+++|+.||.|+.+|+
T Consensus 7 ~l~npP~d~IS~v~f~~~~~-~LLvssWDgslrlYdv~~~~l~~~~~--~~~plL~c~F~d-~~~~~~G~~dg~vr~~Dl 82 (323)
T KOG1036|consen 7 ELENPPEDGISSVKFSPSSS-DLLVSSWDGSLRLYDVPANSLKLKFK--HGAPLLDCAFAD-ESTIVTGGLDGQVRRYDL 82 (323)
T ss_pred ccCCCChhceeeEEEcCcCC-cEEEEeccCcEEEEeccchhhhhhee--cCCceeeeeccC-CceEEEeccCceEEEEEe
Confidence 34445567899999998888 66667799999999999987777775 999999999987 457899999999999999
Q ss_pred eCCCCCceeEEeccCCCCCCeeEEEecCCCEEEEEECCCCEEEEEeeecccceecchhhHHHHHhhccchhhhhccCcee
Q 003579 298 DTTDGDPRLLRFRSGHSAPPLCIRFYANGRHILSAGQDRAFRLFSVIQDQQSRELSQRHVAKRARKLKMKEEELKLKPVI 377 (809)
Q Consensus 298 ~~~~~~~~~~~~~~~h~~~v~~i~~~~~~~~l~s~~~dg~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~ 377 (809)
++... ..+..|..++.|+.+++....+++||.|++|++||.+.......+.+
T Consensus 83 n~~~~-----~~igth~~~i~ci~~~~~~~~vIsgsWD~~ik~wD~R~~~~~~~~d~----------------------- 134 (323)
T KOG1036|consen 83 NTGNE-----DQIGTHDEGIRCIEYSYEVGCVISGSWDKTIKFWDPRNKVVVGTFDQ----------------------- 134 (323)
T ss_pred cCCcc-----eeeccCCCceEEEEeeccCCeEEEcccCccEEEEecccccccccccc-----------------------
Confidence 88742 33458999999999999778999999999999999876333222211
Q ss_pred EEeeccccccccceeEEeecCCceEEEEEeeeeeecceeeecCCCCCCCeEEEEEcCCCCEEEEEeCCCcEEEEECCCCc
Q 003579 378 AFDCAEIRERDWCNVVTCHMDTAQAYVWRLQNFVLGEHILRPCPENPTAVKACTISACGNFAVLGTAGGWIERFNLQSGI 457 (809)
Q Consensus 378 ~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~v~~v~~s~~g~~l~~g~~~g~i~i~~~~~~~ 457 (809)
...|.+ .+-.|+.|++|+.+..+.+||+++..
T Consensus 135 ----------------------------------------------~kkVy~--~~v~g~~LvVg~~~r~v~iyDLRn~~ 166 (323)
T KOG1036|consen 135 ----------------------------------------------GKKVYC--MDVSGNRLVVGTSDRKVLIYDLRNLD 166 (323)
T ss_pred ----------------------------------------------CceEEE--EeccCCEEEEeecCceEEEEEccccc
Confidence 123333 44458999999999999999998876
Q ss_pred eeeeeeCcccccccCccccEEEEEEcCCCCEEEEEeCcCeEEEEECCCC----ceeeeeecC----------CCeEEEEE
Q 003579 458 SRGSYLDMSERSNYAHNGEVVGVACDSTNTLMISAGYHGDIKVWDFKGR----DLKSRWEVG----------CSLVKIVY 523 (809)
Q Consensus 458 ~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~l~s~~~dg~i~iwd~~~~----~~~~~~~~~----------~~i~~~~~ 523 (809)
...+.. ...-+-.++++++-|++.-.+.++-||.|.+=.++.. +....++.| .+|++++|
T Consensus 167 ~~~q~r------eS~lkyqtR~v~~~pn~eGy~~sSieGRVavE~~d~s~~~~skkyaFkCHr~~~~~~~~~yPVNai~F 240 (323)
T KOG1036|consen 167 EPFQRR------ESSLKYQTRCVALVPNGEGYVVSSIEGRVAVEYFDDSEEAQSKKYAFKCHRLSEKDTEIIYPVNAIAF 240 (323)
T ss_pred chhhhc------cccceeEEEEEEEecCCCceEEEeecceEEEEccCCchHHhhhceeEEeeecccCCceEEEEeceeEe
Confidence 544221 1245678999999998888999999999988777655 222233322 68999999
Q ss_pred eeCCCEEEEEeCCCeEEEEEcCCCeEEEEEecCCCCeeeEEECCCCCEEEEEe
Q 003579 524 HRVNGLLATVADDLVIRLFDVVALRMVRKFEGHTDRITDFCFSEDGKWLLSSG 576 (809)
Q Consensus 524 s~~~~~la~~~~d~~I~v~d~~~~~~~~~~~~h~~~I~~l~fspdg~~l~s~s 576 (809)
||-.+.+|+|+.||.|.+||+.+.+.+.+|..-...|.+++|+.||..||.|+
T Consensus 241 hp~~~tfaTgGsDG~V~~Wd~~~rKrl~q~~~~~~SI~slsfs~dG~~LAia~ 293 (323)
T KOG1036|consen 241 HPIHGTFATGGSDGIVNIWDLFNRKRLKQLAKYETSISSLSFSMDGSLLAIAS 293 (323)
T ss_pred ccccceEEecCCCceEEEccCcchhhhhhccCCCCceEEEEeccCCCeEEEEe
Confidence 99999999999999999999999999999988888899999999999999887
No 123
>KOG0301 consensus Phospholipase A2-activating protein (contains WD40 repeats) [Lipid transport and metabolism]
Probab=99.94 E-value=8.6e-25 Score=224.85 Aligned_cols=284 Identities=19% Similarity=0.313 Sum_probs=232.4
Q ss_pred CceEEEEcCCCCCEEEEEEcCCCCEEEEEeCCCeEEEEEeeCCeEEEE-EeccCCCcEEE-EEEecCCCCEEEEEcCCCc
Q 003579 171 KKKLYEFKGWGSSISSCVSSPALDVVAVGCSDGKIHVHNVRYDEELVT-FTHSMRGAVTA-LAFSSDGQPLLASGASSGV 248 (809)
Q Consensus 171 ~~~~~~~~~~~~~I~~l~~sp~~~~la~g~~dg~i~iwd~~~~~~~~~-~~~~~~~~V~~-l~fs~dg~~~lasg~~dg~ 248 (809)
-++-+.+.+|...|..++..+.. .+++++.||++++|+-+.++.+.. .-..+.+.|.+ +++-+..+..+++|+.|+.
T Consensus 4 Y~ls~~l~gH~~DVr~v~~~~~~-~i~s~sRd~t~~vw~~~~~~~l~~~~~~~~~g~i~~~i~y~e~~~~~l~~g~~D~~ 82 (745)
T KOG0301|consen 4 YKLSHELEGHKSDVRAVAVTDGV-CIISGSRDGTVKVWAKKGKQYLETHAFEGPKGFIANSICYAESDKGRLVVGGMDTT 82 (745)
T ss_pred ceeEEEeccCccchheeEecCCe-EEeecCCCCceeeeeccCcccccceecccCcceeeccceeccccCcceEeecccce
Confidence 46678899999999999887664 789999999999999876665542 22223566665 7887633336999999999
Q ss_pred EEEEECCCceeeeeeecccccceEEEEEecCCCEEEEEcCCCcEEEEEeeCCCCCceeEEeccCCCCCCeeEEEecCCCE
Q 003579 249 ISIWNLEKRRLQSVIREAHDNAIISLHFFANEPVLMSASADNSIKMWIFDTTDGDPRLLRFRSGHSAPPLCIRFYANGRH 328 (809)
Q Consensus 249 I~iwdl~~~~~~~~~~~~h~~~V~~l~~~~~~~~l~s~s~d~~i~vw~~~~~~~~~~~~~~~~~h~~~v~~i~~~~~~~~ 328 (809)
|.+|.+.+......+. +|.+.|.++....++. +++||.|.++++|... ++.....+|...|.++...|++ .
T Consensus 83 i~v~~~~~~~P~~~Lk-gH~snVC~ls~~~~~~-~iSgSWD~TakvW~~~------~l~~~l~gH~asVWAv~~l~e~-~ 153 (745)
T KOG0301|consen 83 IIVFKLSQAEPLYTLK-GHKSNVCSLSIGEDGT-LISGSWDSTAKVWRIG------ELVYSLQGHTASVWAVASLPEN-T 153 (745)
T ss_pred EEEEecCCCCchhhhh-ccccceeeeecCCcCc-eEecccccceEEecch------hhhcccCCcchheeeeeecCCC-c
Confidence 9999999999999999 9999999999887776 9999999999999554 3455578999999999999988 8
Q ss_pred EEEEECCCCEEEEEeeecccceecchhhHHHHHhhccchhhhhccCceeEEeeccccccccceeEEeecCCceEEEEEee
Q 003579 329 ILSAGQDRAFRLFSVIQDQQSRELSQRHVAKRARKLKMKEEELKLKPVIAFDCAEIRERDWCNVVTCHMDTAQAYVWRLQ 408 (809)
Q Consensus 329 l~s~~~dg~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~ 408 (809)
++||+.|.+|++|.-.
T Consensus 154 ~vTgsaDKtIklWk~~---------------------------------------------------------------- 169 (745)
T KOG0301|consen 154 YVTGSADKTIKLWKGG---------------------------------------------------------------- 169 (745)
T ss_pred EEeccCcceeeeccCC----------------------------------------------------------------
Confidence 8999999999999631
Q ss_pred eeeecceeeecCCCCCCCeEEEEEcCCCCEEEEEeCCCcEEEEECCCCceeeeeeCcccccccCccccEEEEEEcCCCCE
Q 003579 409 NFVLGEHILRPCPENPTAVKACTISACGNFAVLGTAGGWIERFNLQSGISRGSYLDMSERSNYAHNGEVVGVACDSTNTL 488 (809)
Q Consensus 409 ~~~~~~~~~~~~~~~~~~v~~v~~s~~g~~l~~g~~~g~i~i~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~ 488 (809)
.....+ .+|...|+++++-+++ .
T Consensus 170 ------------------------------------------------~~l~tf--------~gHtD~VRgL~vl~~~-~ 192 (745)
T KOG0301|consen 170 ------------------------------------------------TLLKTF--------SGHTDCVRGLAVLDDS-H 192 (745)
T ss_pred ------------------------------------------------chhhhh--------ccchhheeeeEEecCC-C
Confidence 111122 3899999999998875 4
Q ss_pred EEEEeCcCeEEEEECCCCceeeeeecCCCeEEEEEeeCCCEEEEEeCCCeEEEEEcCCCeEEEEEecCCCCeeeEEECCC
Q 003579 489 MISAGYHGDIKVWDFKGRDLKSRWEVGCSLVKIVYHRVNGLLATVADDLVIRLFDVVALRMVRKFEGHTDRITDFCFSED 568 (809)
Q Consensus 489 l~s~~~dg~i~iwd~~~~~~~~~~~~~~~i~~~~~s~~~~~la~~~~d~~I~v~d~~~~~~~~~~~~h~~~I~~l~fspd 568 (809)
+++|+.||.|++|++....++....+..-+.++....+++.++++++|+++++|+.. ++++.+.-..-.|.++.+-++
T Consensus 193 flScsNDg~Ir~w~~~ge~l~~~~ghtn~vYsis~~~~~~~Ivs~gEDrtlriW~~~--e~~q~I~lPttsiWsa~~L~N 270 (745)
T KOG0301|consen 193 FLSCSNDGSIRLWDLDGEVLLEMHGHTNFVYSISMALSDGLIVSTGEDRTLRIWKKD--ECVQVITLPTTSIWSAKVLLN 270 (745)
T ss_pred eEeecCCceEEEEeccCceeeeeeccceEEEEEEecCCCCeEEEecCCceEEEeecC--ceEEEEecCccceEEEEEeeC
Confidence 889999999999999544444444555889999988889999999999999999987 777777755668999999988
Q ss_pred CCEEEEEeCCCeEEEEEcCC
Q 003579 569 GKWLLSSGMDGSLRIWDVIL 588 (809)
Q Consensus 569 g~~l~s~s~D~~I~vwd~~~ 588 (809)
|. |++|+.||.||||....
T Consensus 271 gD-Ivvg~SDG~VrVfT~~k 289 (745)
T KOG0301|consen 271 GD-IVVGGSDGRVRVFTVDK 289 (745)
T ss_pred CC-EEEeccCceEEEEEecc
Confidence 87 67788899999998763
No 124
>KOG0641 consensus WD40 repeat protein [General function prediction only]
Probab=99.94 E-value=1.2e-23 Score=186.99 Aligned_cols=290 Identities=16% Similarity=0.247 Sum_probs=228.4
Q ss_pred cccceEEEEEecCCCEEEEEcCCCcEEEEEeeCC----------CCCceeE-EeccCCCCCCeeEEEecCCCEEEEEECC
Q 003579 267 HDNAIISLHFFANEPVLMSASADNSIKMWIFDTT----------DGDPRLL-RFRSGHSAPPLCIRFYANGRHILSAGQD 335 (809)
Q Consensus 267 h~~~V~~l~~~~~~~~l~s~s~d~~i~vw~~~~~----------~~~~~~~-~~~~~h~~~v~~i~~~~~~~~l~s~~~d 335 (809)
....|.+++|.|.|.+.+.|+..+++++..+..- ...+..+ +..+.|.+.|.|.+|+|+|+.|++|+.|
T Consensus 31 dsqairav~fhp~g~lyavgsnskt~ric~yp~l~~~r~~hea~~~pp~v~~kr~khhkgsiyc~~ws~~geliatgsnd 110 (350)
T KOG0641|consen 31 DSQAIRAVAFHPAGGLYAVGSNSKTFRICAYPALIDLRHAHEAAKQPPSVLCKRNKHHKGSIYCTAWSPCGELIATGSND 110 (350)
T ss_pred chhheeeEEecCCCceEEeccCCceEEEEccccccCcccccccccCCCeEEeeeccccCccEEEEEecCccCeEEecCCC
Confidence 5678999999999999999999999998855321 1112222 3345688999999999999999999999
Q ss_pred CCEEEEEeeecccceecchhhHHHHHhhccchhhhhccCceeEEeeccccccccceeEEeecCCceEEEEEeeeeeecce
Q 003579 336 RAFRLFSVIQDQQSRELSQRHVAKRARKLKMKEEELKLKPVIAFDCAEIRERDWCNVVTCHMDTAQAYVWRLQNFVLGEH 415 (809)
Q Consensus 336 g~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~ 415 (809)
.+|++..+..+.+...= +
T Consensus 111 k~ik~l~fn~dt~~~~g--------------------------------------------------------------~ 128 (350)
T KOG0641|consen 111 KTIKVLPFNADTCNATG--------------------------------------------------------------H 128 (350)
T ss_pred ceEEEEecccccccccC--------------------------------------------------------------c
Confidence 99999876554332110 0
Q ss_pred eeecCCCCCCCeEEEEEcCC----CCEEEEEe-CCCcEEEEECCCCceeeeeeCcccccccCccccEEEEEEcCCCCEEE
Q 003579 416 ILRPCPENPTAVKACTISAC----GNFAVLGT-AGGWIERFNLQSGISRGSYLDMSERSNYAHNGEVVGVACDSTNTLMI 490 (809)
Q Consensus 416 ~~~~~~~~~~~v~~v~~s~~----g~~l~~g~-~~g~i~i~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~l~ 490 (809)
.+. ..-|.+.|..++|-.+ |..+++++ .|-.|++-|.+.|+....+. +|.+.|.++- +-+|-+++
T Consensus 129 dle-~nmhdgtirdl~fld~~~s~~~il~s~gagdc~iy~tdc~~g~~~~a~s--------ghtghilaly-swn~~m~~ 198 (350)
T KOG0641|consen 129 DLE-FNMHDGTIRDLAFLDDPESGGAILASAGAGDCKIYITDCGRGQGFHALS--------GHTGHILALY-SWNGAMFA 198 (350)
T ss_pred cee-eeecCCceeeeEEecCCCcCceEEEecCCCcceEEEeecCCCCcceeec--------CCcccEEEEE-EecCcEEE
Confidence 000 0124477888888543 44555544 35678888899998888775 9999998874 44688999
Q ss_pred EEeCcCeEEEEECCCCceeeeeecC--------CCeEEEEEeeCCCEEEEEeCCCeEEEEEcCCCeEEEEEecCCCCeee
Q 003579 491 SAGYHGDIKVWDFKGRDLKSRWEVG--------CSLVKIVYHRVNGLLATVADDLVIRLFDVVALRMVRKFEGHTDRITD 562 (809)
Q Consensus 491 s~~~dg~i~iwd~~~~~~~~~~~~~--------~~i~~~~~s~~~~~la~~~~d~~I~v~d~~~~~~~~~~~~h~~~I~~ 562 (809)
+|+.|.+|++||++-..++.++... +.+.+++..|.|++|++|..|....+||++.++.++.|..|+..|.+
T Consensus 199 sgsqdktirfwdlrv~~~v~~l~~~~~~~glessavaav~vdpsgrll~sg~~dssc~lydirg~r~iq~f~phsadir~ 278 (350)
T KOG0641|consen 199 SGSQDKTIRFWDLRVNSCVNTLDNDFHDGGLESSAVAAVAVDPSGRLLASGHADSSCMLYDIRGGRMIQRFHPHSADIRC 278 (350)
T ss_pred ccCCCceEEEEeeeccceeeeccCcccCCCcccceeEEEEECCCcceeeeccCCCceEEEEeeCCceeeeeCCCccceeE
Confidence 9999999999999988888777432 67899999999999999999999999999999999999999999999
Q ss_pred EEECCCCCEEEEEeCCCeEEEEEcCCc--c--EEEEe-eeCcceEEEEEcCCCCeEEEEEeCCCeEEEeecC
Q 003579 563 FCFSEDGKWLLSSGMDGSLRIWDVILA--R--QIDAI-HVDVSITALSLSPNMDVLATAHVDQNGVYLWVNR 629 (809)
Q Consensus 563 l~fspdg~~l~s~s~D~~I~vwd~~~~--~--~i~~~-~~~~~v~~l~~spdg~~lat~~~d~~~i~lW~~~ 629 (809)
+.|||...||++++.|..|++-|++.. + .+-.. .+...+..+.|+|..--+++.+.|. ++.+|...
T Consensus 279 vrfsp~a~yllt~syd~~ikltdlqgdla~el~~~vv~ehkdk~i~~rwh~~d~sfisssadk-t~tlwa~~ 349 (350)
T KOG0641|consen 279 VRFSPGAHYLLTCSYDMKIKLTDLQGDLAHELPIMVVAEHKDKAIQCRWHPQDFSFISSSADK-TATLWALN 349 (350)
T ss_pred EEeCCCceEEEEecccceEEEeecccchhhcCceEEEEeccCceEEEEecCccceeeeccCcc-eEEEeccC
Confidence 999999999999999999999998732 1 12222 3444588899999988888999998 79999864
No 125
>TIGR03866 PQQ_ABC_repeats PQQ-dependent catabolism-associated beta-propeller protein. Members of this protein family consist of seven repeats each of the YVTN family beta-propeller repeat (see TIGR02276). Members occur invariably as part of a transport operon that is associated with PQQ-dependent catabolism of alcohols such as phenylethanol.
Probab=99.94 E-value=1.6e-23 Score=218.55 Aligned_cols=284 Identities=13% Similarity=0.155 Sum_probs=218.1
Q ss_pred EEEEEcCCCcEEEEECCCceeeeeeecccccceEEEEEecCCCEE-EEEcCCCcEEEEEeeCCCCCceeEEeccCCCCCC
Q 003579 239 LLASGASSGVISIWNLEKRRLQSVIREAHDNAIISLHFFANEPVL-MSASADNSIKMWIFDTTDGDPRLLRFRSGHSAPP 317 (809)
Q Consensus 239 ~lasg~~dg~I~iwdl~~~~~~~~~~~~h~~~V~~l~~~~~~~~l-~s~s~d~~i~vw~~~~~~~~~~~~~~~~~h~~~v 317 (809)
++++++.|+.|.+||+.+++.+..+. .+ ..+.+++|+|++..+ ++++.++.|++|+.... +....+..+.. +
T Consensus 3 ~~~s~~~d~~v~~~d~~t~~~~~~~~-~~-~~~~~l~~~~dg~~l~~~~~~~~~v~~~d~~~~----~~~~~~~~~~~-~ 75 (300)
T TIGR03866 3 AYVSNEKDNTISVIDTATLEVTRTFP-VG-QRPRGITLSKDGKLLYVCASDSDTIQVIDLATG----EVIGTLPSGPD-P 75 (300)
T ss_pred EEEEecCCCEEEEEECCCCceEEEEE-CC-CCCCceEECCCCCEEEEEECCCCeEEEEECCCC----cEEEeccCCCC-c
Confidence 78899999999999999998888876 44 346789999999876 56778899999987654 33343433433 5
Q ss_pred eeEEEecCCCEEEEE-ECCCCEEEEEeeecccceecchhhHHHHHhhccchhhhhccCceeEEeeccccccccceeEEee
Q 003579 318 LCIRFYANGRHILSA-GQDRAFRLFSVIQDQQSRELSQRHVAKRARKLKMKEEELKLKPVIAFDCAEIRERDWCNVVTCH 396 (809)
Q Consensus 318 ~~i~~~~~~~~l~s~-~~dg~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~ 396 (809)
..++|+|+++.++++ +.|+.+++||+.+......+.
T Consensus 76 ~~~~~~~~g~~l~~~~~~~~~l~~~d~~~~~~~~~~~------------------------------------------- 112 (300)
T TIGR03866 76 ELFALHPNGKILYIANEDDNLVTVIDIETRKVLAEIP------------------------------------------- 112 (300)
T ss_pred cEEEECCCCCEEEEEcCCCCeEEEEECCCCeEEeEee-------------------------------------------
Confidence 678999999877654 568999999986543222110
Q ss_pred cCCceEEEEEeeeeeecceeeecCCCCCCCeEEEEEcCCCCEEEEEeCCC-cEEEEECCCCceeeeeeCcccccccCccc
Q 003579 397 MDTAQAYVWRLQNFVLGEHILRPCPENPTAVKACTISACGNFAVLGTAGG-WIERFNLQSGISRGSYLDMSERSNYAHNG 475 (809)
Q Consensus 397 ~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~v~~v~~s~~g~~l~~g~~~g-~i~i~~~~~~~~~~~~~~~~~~~~~~h~~ 475 (809)
....+.+++++|+|++++++..++ .+..|+..++....... ...
T Consensus 113 --------------------------~~~~~~~~~~~~dg~~l~~~~~~~~~~~~~d~~~~~~~~~~~---------~~~ 157 (300)
T TIGR03866 113 --------------------------VGVEPEGMAVSPDGKIVVNTSETTNMAHFIDTKTYEIVDNVL---------VDQ 157 (300)
T ss_pred --------------------------CCCCcceEEECCCCCEEEEEecCCCeEEEEeCCCCeEEEEEE---------cCC
Confidence 013356789999999999998875 46778988876655432 223
Q ss_pred cEEEEEEcCCCCEEEEE-eCcCeEEEEECCCCceeeeeecC--------CCeEEEEEeeCCCEEEEE-eCCCeEEEEEcC
Q 003579 476 EVVGVACDSTNTLMISA-GYHGDIKVWDFKGRDLKSRWEVG--------CSLVKIVYHRVNGLLATV-ADDLVIRLFDVV 545 (809)
Q Consensus 476 ~v~~l~~~~~~~~l~s~-~~dg~i~iwd~~~~~~~~~~~~~--------~~i~~~~~s~~~~~la~~-~~d~~I~v~d~~ 545 (809)
...+++|+|++++++.+ ..++.|++||+.+++.+..+... .....++|+|++++++++ ..++.+.+||++
T Consensus 158 ~~~~~~~s~dg~~l~~~~~~~~~v~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~i~~s~dg~~~~~~~~~~~~i~v~d~~ 237 (300)
T TIGR03866 158 RPRFAEFTADGKELWVSSEIGGTVSVIDVATRKVIKKITFEIPGVHPEAVQPVGIKLTKDGKTAFVALGPANRVAVVDAK 237 (300)
T ss_pred CccEEEECCCCCEEEEEcCCCCEEEEEEcCcceeeeeeeecccccccccCCccceEECCCCCEEEEEcCCCCeEEEEECC
Confidence 45779999999988554 46999999999999887766432 123568899999986554 456789999999
Q ss_pred CCeEEEEEecCCCCeeeEEECCCCCEEEEE-eCCCeEEEEEcCCccEEEEeeeCcceEEEEEcC
Q 003579 546 ALRMVRKFEGHTDRITDFCFSEDGKWLLSS-GMDGSLRIWDVILARQIDAIHVDVSITALSLSP 608 (809)
Q Consensus 546 ~~~~~~~~~~h~~~I~~l~fspdg~~l~s~-s~D~~I~vwd~~~~~~i~~~~~~~~v~~l~~sp 608 (809)
+++.+..+. +...+.+++|+|+|++|+++ +.++.|++||+.+++++..+.....+++++++|
T Consensus 238 ~~~~~~~~~-~~~~~~~~~~~~~g~~l~~~~~~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~ 300 (300)
T TIGR03866 238 TYEVLDYLL-VGQRVWQLAFTPDEKYLLTTNGVSNDVSVIDVAALKVIKSIKVGRLPWGVVVRP 300 (300)
T ss_pred CCcEEEEEE-eCCCcceEEECCCCCEEEEEcCCCCeEEEEECCCCcEEEEEEcccccceeEeCC
Confidence 998877664 44579999999999999876 468999999999999999999888889999876
No 126
>KOG1036 consensus Mitotic spindle checkpoint protein BUB3, WD repeat superfamily [Cell cycle control, cell division, chromosome partitioning]
Probab=99.93 E-value=3.1e-24 Score=200.64 Aligned_cols=276 Identities=16% Similarity=0.243 Sum_probs=216.9
Q ss_pred CCCEEEEEEcCCCCEEEEEeCCCeEEEEEeeCCeEEEEEeccCCCcEEEEEEecCCCCEEEEEcCCCcEEEEECCCceee
Q 003579 181 GSSISSCVSSPALDVVAVGCSDGKIHVHNVRYDEELVTFTHSMRGAVTALAFSSDGQPLLASGASSGVISIWNLEKRRLQ 260 (809)
Q Consensus 181 ~~~I~~l~~sp~~~~la~g~~dg~i~iwd~~~~~~~~~~~~~~~~~V~~l~fs~dg~~~lasg~~dg~I~iwdl~~~~~~ 260 (809)
...|+++.|+|.++.|++++.||++++|++........+.. ..++.+++|.++.+ +++|+.||.|+.+|+.++...
T Consensus 13 ~d~IS~v~f~~~~~~LLvssWDgslrlYdv~~~~l~~~~~~--~~plL~c~F~d~~~--~~~G~~dg~vr~~Dln~~~~~ 88 (323)
T KOG1036|consen 13 EDGISSVKFSPSSSDLLVSSWDGSLRLYDVPANSLKLKFKH--GAPLLDCAFADEST--IVTGGLDGQVRRYDLNTGNED 88 (323)
T ss_pred hhceeeEEEcCcCCcEEEEeccCcEEEEeccchhhhhheec--CCceeeeeccCCce--EEEeccCceEEEEEecCCcce
Confidence 67899999999999999999999999999998877666665 68999999998764 889999999999999998776
Q ss_pred eeeecccccceEEEEEecCCCEEEEEcCCCcEEEEEeeCCCCCceeEEeccCCCCCCeeEEEecCCCEEEEEECCCCEEE
Q 003579 261 SVIREAHDNAIISLHFFANEPVLMSASADNSIKMWIFDTTDGDPRLLRFRSGHSAPPLCIRFYANGRHILSAGQDRAFRL 340 (809)
Q Consensus 261 ~~~~~~h~~~V~~l~~~~~~~~l~s~s~d~~i~vw~~~~~~~~~~~~~~~~~h~~~v~~i~~~~~~~~l~s~~~dg~i~~ 340 (809)
..- .|..+|.++.+++....+++||.|++|++||..... ..... .....|.++.. .|..|++|+.|+.+.+
T Consensus 89 ~ig--th~~~i~ci~~~~~~~~vIsgsWD~~ik~wD~R~~~----~~~~~-d~~kkVy~~~v--~g~~LvVg~~~r~v~i 159 (323)
T KOG1036|consen 89 QIG--THDEGIRCIEYSYEVGCVISGSWDKTIKFWDPRNKV----VVGTF-DQGKKVYCMDV--SGNRLVVGTSDRKVLI 159 (323)
T ss_pred eec--cCCCceEEEEeeccCCeEEEcccCccEEEEeccccc----ccccc-ccCceEEEEec--cCCEEEEeecCceEEE
Confidence 554 599999999999988899999999999999876431 22111 22235666665 4678999999999999
Q ss_pred EEeeecccceecchhhHHHHHhhccchhhhhccCceeEEeeccccccccceeEEeecCCceEEEEEeeeeeecceeeecC
Q 003579 341 FSVIQDQQSRELSQRHVAKRARKLKMKEEELKLKPVIAFDCAEIRERDWCNVVTCHMDTAQAYVWRLQNFVLGEHILRPC 420 (809)
Q Consensus 341 wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~ 420 (809)
||+++.........
T Consensus 160 yDLRn~~~~~q~re------------------------------------------------------------------ 173 (323)
T KOG1036|consen 160 YDLRNLDEPFQRRE------------------------------------------------------------------ 173 (323)
T ss_pred EEcccccchhhhcc------------------------------------------------------------------
Confidence 99987654331110
Q ss_pred CCCCCCeEEEEEcCCCCEEEEEeCCCcEEEEECCCC----ceeeeeeCcccc-cccCccccEEEEEEcCCCCEEEEEeCc
Q 003579 421 PENPTAVKACTISACGNFAVLGTAGGWIERFNLQSG----ISRGSYLDMSER-SNYAHNGEVVGVACDSTNTLMISAGYH 495 (809)
Q Consensus 421 ~~~~~~v~~v~~s~~g~~l~~g~~~g~i~i~~~~~~----~~~~~~~~~~~~-~~~~h~~~v~~l~~~~~~~~l~s~~~d 495 (809)
...+..++++++-|.+.-.++++-+|.|.+=.+... .....|.-.... ....--.+|++++|+|-.+.++|||.|
T Consensus 174 S~lkyqtR~v~~~pn~eGy~~sSieGRVavE~~d~s~~~~skkyaFkCHr~~~~~~~~~yPVNai~Fhp~~~tfaTgGsD 253 (323)
T KOG1036|consen 174 SSLKYQTRCVALVPNGEGYVVSSIEGRVAVEYFDDSEEAQSKKYAFKCHRLSEKDTEIIYPVNAIAFHPIHGTFATGGSD 253 (323)
T ss_pred ccceeEEEEEEEecCCCceEEEeecceEEEEccCCchHHhhhceeEEeeecccCCceEEEEeceeEeccccceEEecCCC
Confidence 012267899999999999999999999887655544 222223211000 001123479999999999999999999
Q ss_pred CeEEEEECCCCceeeeeecC-CCeEEEEEeeCCCEEEEEeC
Q 003579 496 GDIKVWDFKGRDLKSRWEVG-CSLVKIVYHRVNGLLATVAD 535 (809)
Q Consensus 496 g~i~iwd~~~~~~~~~~~~~-~~i~~~~~s~~~~~la~~~~ 535 (809)
|.|.+||..+.+.+..+..- ..|.+++|+.+|..||+++.
T Consensus 254 G~V~~Wd~~~rKrl~q~~~~~~SI~slsfs~dG~~LAia~s 294 (323)
T KOG1036|consen 254 GIVNIWDLFNRKRLKQLAKYETSISSLSFSMDGSLLAIASS 294 (323)
T ss_pred ceEEEccCcchhhhhhccCCCCceEEEEeccCCCeEEEEec
Confidence 99999999999888887655 77999999999999999975
No 127
>KOG0639 consensus Transducin-like enhancer of split protein (contains WD40 repeats) [Chromatin structure and dynamics]
Probab=99.93 E-value=4.7e-25 Score=217.77 Aligned_cols=281 Identities=16% Similarity=0.252 Sum_probs=237.5
Q ss_pred CCCCCEEEEEEcCCCCEEEEEeCCCeEEEEEeeCC---eEEEEEecc-CCCcEEEEEEecCCCCEEEEEcCCCcEEEEEC
Q 003579 179 GWGSSISSCVSSPALDVVAVGCSDGKIHVHNVRYD---EELVTFTHS-MRGAVTALAFSSDGQPLLASGASSGVISIWNL 254 (809)
Q Consensus 179 ~~~~~I~~l~~sp~~~~la~g~~dg~i~iwd~~~~---~~~~~~~~~-~~~~V~~l~fs~dg~~~lasg~~dg~I~iwdl 254 (809)
.|..-|.++..|...+.+.+|+. |.|+|||+... ..+..+..- ....|.++...|||+ .|++|+.-.++.|||+
T Consensus 417 ~HGEvVcAvtIS~~trhVyTgGk-gcVKVWdis~pg~k~PvsqLdcl~rdnyiRSckL~pdgr-tLivGGeastlsiWDL 494 (705)
T KOG0639|consen 417 AHGEVVCAVTISNPTRHVYTGGK-GCVKVWDISQPGNKSPVSQLDCLNRDNYIRSCKLLPDGR-TLIVGGEASTLSIWDL 494 (705)
T ss_pred ccCcEEEEEEecCCcceeEecCC-CeEEEeeccCCCCCCccccccccCcccceeeeEecCCCc-eEEeccccceeeeeec
Confidence 46788888999999999999986 88999999743 234444432 246899999999999 7888999999999999
Q ss_pred CCceeee--eeecccccceEEEEEecCCCEEEEEcCCCcEEEEEeeCCCCCceeEEeccCCCCCCeeEEEecCCCEEEEE
Q 003579 255 EKRRLQS--VIREAHDNAIISLHFFANEPVLMSASADNSIKMWIFDTTDGDPRLLRFRSGHSAPPLCIRFYANGRHILSA 332 (809)
Q Consensus 255 ~~~~~~~--~~~~~h~~~V~~l~~~~~~~~l~s~s~d~~i~vw~~~~~~~~~~~~~~~~~h~~~v~~i~~~~~~~~l~s~ 332 (809)
......- .+. ...-...+++.+||.++.+++..||.|.|||+... .+++.+.||...+.||..++||..|-+|
T Consensus 495 AapTprikaelt-ssapaCyALa~spDakvcFsccsdGnI~vwDLhnq----~~VrqfqGhtDGascIdis~dGtklWTG 569 (705)
T KOG0639|consen 495 AAPTPRIKAELT-SSAPACYALAISPDAKVCFSCCSDGNIAVWDLHNQ----TLVRQFQGHTDGASCIDISKDGTKLWTG 569 (705)
T ss_pred cCCCcchhhhcC-CcchhhhhhhcCCccceeeeeccCCcEEEEEcccc----eeeecccCCCCCceeEEecCCCceeecC
Confidence 8764432 222 23345788999999999999999999999999876 6889999999999999999999999999
Q ss_pred ECCCCEEEEEeeecccceecchhhHHHHHhhccchhhhhccCceeEEeeccccccccceeEEeecCCceEEEEEeeeeee
Q 003579 333 GQDRAFRLFSVIQDQQSRELSQRHVAKRARKLKMKEEELKLKPVIAFDCAEIRERDWCNVVTCHMDTAQAYVWRLQNFVL 412 (809)
Q Consensus 333 ~~dg~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~ 412 (809)
+-|.++|.||++.+.+..+..
T Consensus 570 GlDntvRcWDlregrqlqqhd----------------------------------------------------------- 590 (705)
T KOG0639|consen 570 GLDNTVRCWDLREGRQLQQHD----------------------------------------------------------- 590 (705)
T ss_pred CCccceeehhhhhhhhhhhhh-----------------------------------------------------------
Confidence 999999999998776544321
Q ss_pred cceeeecCCCCCCCeEEEEEcCCCCEEEEEeCCCcEEEEECCCCceeeeeeCcccccccCccccEEEEEEcCCCCEEEEE
Q 003579 413 GEHILRPCPENPTAVKACTISACGNFAVLGTAGGWIERFNLQSGISRGSYLDMSERSNYAHNGEVVGVACDSTNTLMISA 492 (809)
Q Consensus 413 ~~~~~~~~~~~~~~v~~v~~s~~g~~l~~g~~~g~i~i~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~l~s~ 492 (809)
..+.|.++..+|.+.++++|-.++.+.+.......... + ..|...|.++.|.+.|+++++.
T Consensus 591 ----------F~SQIfSLg~cP~~dWlavGMens~vevlh~skp~kyq-l--------hlheScVLSlKFa~cGkwfvSt 651 (705)
T KOG0639|consen 591 ----------FSSQIFSLGYCPTGDWLAVGMENSNVEVLHTSKPEKYQ-L--------HLHESCVLSLKFAYCGKWFVST 651 (705)
T ss_pred ----------hhhhheecccCCCccceeeecccCcEEEEecCCcccee-e--------cccccEEEEEEecccCceeeec
Confidence 12678889999999999999999999998876554433 2 3799999999999999999999
Q ss_pred eCcCeEEEEECCCCceeeeeecCCCeEEEEEeeCCCEEEEEeCCCeEEEEEc
Q 003579 493 GYHGDIKVWDFKGRDLKSRWEVGCSLVKIVYHRVNGLLATVADDLVIRLFDV 544 (809)
Q Consensus 493 ~~dg~i~iwd~~~~~~~~~~~~~~~i~~~~~s~~~~~la~~~~d~~I~v~d~ 544 (809)
+.|..+..|...-|..+......++|.++.++.|++++++|+.|....||.+
T Consensus 652 GkDnlLnawrtPyGasiFqskE~SsVlsCDIS~ddkyIVTGSGdkkATVYeV 703 (705)
T KOG0639|consen 652 GKDNLLNAWRTPYGASIFQSKESSSVLSCDISFDDKYIVTGSGDKKATVYEV 703 (705)
T ss_pred CchhhhhhccCccccceeeccccCcceeeeeccCceEEEecCCCcceEEEEE
Confidence 9999999999999988888888899999999999999999999988888864
No 128
>KOG2096 consensus WD40 repeat protein [General function prediction only]
Probab=99.93 E-value=4.1e-24 Score=199.84 Aligned_cols=208 Identities=14% Similarity=0.237 Sum_probs=159.9
Q ss_pred EEccccccEEEEEE--eCCEEEEEeCCCcEEEEEcCCCccccceeeeEEcCCccccEEEEeCCCCCCEEEEEeCCCeEEE
Q 003579 88 TWSRHSAKVNLLLL--FGEHILSIDIDGNMFIWAFKGIEENLAPVGHVKLDDKFTPTCIMHPDTYLNKVIVGSQEGSLQL 165 (809)
Q Consensus 88 ~~~~h~~~V~~l~~--~g~~l~s~~~dg~i~vWd~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~l~~~~~dg~i~l 165 (809)
.++||.+.|++++| +|++|++++.|++|++|++...+...-..............+.|+|+-. ..++..-...++++
T Consensus 81 ~LKgH~~~vt~~~FsSdGK~lat~~~Dr~Ir~w~~~DF~~~eHr~~R~nve~dhpT~V~FapDc~-s~vv~~~~g~~l~v 159 (420)
T KOG2096|consen 81 VLKGHKKEVTDVAFSSDGKKLATISGDRSIRLWDVRDFENKEHRCIRQNVEYDHPTRVVFAPDCK-SVVVSVKRGNKLCV 159 (420)
T ss_pred hhhccCCceeeeEEcCCCceeEEEeCCceEEEEecchhhhhhhhHhhccccCCCceEEEECCCcc-eEEEEEccCCEEEE
Confidence 38899999999999 7999999999999999999875432111111122223445678999983 33444445568999
Q ss_pred EeCCC---CceEEE---------EcCCCCCEEEEEEcCCCCEEEEEeCCCeEEEEEeeCCeEEEEEeccCCCcEEEEEEe
Q 003579 166 WNIST---KKKLYE---------FKGWGSSISSCVSSPALDVVAVGCSDGKIHVHNVRYDEELVTFTHSMRGAVTALAFS 233 (809)
Q Consensus 166 wd~~~---~~~~~~---------~~~~~~~I~~l~~sp~~~~la~g~~dg~i~iwd~~~~~~~~~~~~~~~~~V~~l~fs 233 (809)
|.... |...+. -+.|.-.|..+-....+.+|++++.|..|.+|+++ |+.+..+... ...-+..+.|
T Consensus 160 yk~~K~~dG~~~~~~v~~D~~~f~~kh~v~~i~iGiA~~~k~imsas~dt~i~lw~lk-Gq~L~~idtn-q~~n~~aavS 237 (420)
T KOG2096|consen 160 YKLVKKTDGSGSHHFVHIDNLEFERKHQVDIINIGIAGNAKYIMSASLDTKICLWDLK-GQLLQSIDTN-QSSNYDAAVS 237 (420)
T ss_pred EEeeecccCCCCcccccccccccchhcccceEEEeecCCceEEEEecCCCcEEEEecC-Cceeeeeccc-cccccceeeC
Confidence 97632 322211 13466778888888889999999999999999999 9999888765 5567888999
Q ss_pred cCCCCEEEEEcCCCcEEEEECC---Cc-----eeeeeeecccccceEEEEEecCCCEEEEEcCCCcEEEEEeeCC
Q 003579 234 SDGQPLLASGASSGVISIWNLE---KR-----RLQSVIREAHDNAIISLHFFANEPVLMSASADNSIKMWIFDTT 300 (809)
Q Consensus 234 ~dg~~~lasg~~dg~I~iwdl~---~~-----~~~~~~~~~h~~~V~~l~~~~~~~~l~s~s~d~~i~vw~~~~~ 300 (809)
|+|+ ++|+++-.-.|++|.+- .| ..+..+. +|.+.|..++|+++...+++.+.||++++||.+..
T Consensus 238 P~GR-Fia~~gFTpDVkVwE~~f~kdG~fqev~rvf~Lk-GH~saV~~~aFsn~S~r~vtvSkDG~wriwdtdVr 310 (420)
T KOG2096|consen 238 PDGR-FIAVSGFTPDVKVWEPIFTKDGTFQEVKRVFSLK-GHQSAVLAAAFSNSSTRAVTVSKDGKWRIWDTDVR 310 (420)
T ss_pred CCCc-EEEEecCCCCceEEEEEeccCcchhhhhhhheec-cchhheeeeeeCCCcceeEEEecCCcEEEeeccce
Confidence 9999 88888888899999863 22 3345566 99999999999999999999999999999988754
No 129
>TIGR03866 PQQ_ABC_repeats PQQ-dependent catabolism-associated beta-propeller protein. Members of this protein family consist of seven repeats each of the YVTN family beta-propeller repeat (see TIGR02276). Members occur invariably as part of a transport operon that is associated with PQQ-dependent catabolism of alcohols such as phenylethanol.
Probab=99.93 E-value=4.6e-23 Score=215.12 Aligned_cols=294 Identities=11% Similarity=0.125 Sum_probs=220.0
Q ss_pred CEEEEEeCCCeEEEEeCCCCceEEEEcCCCCCEEEEEEcCCCCEE-EEEeCCCeEEEEEeeCCeEEEEEeccCCCcEEEE
Q 003579 152 NKVIVGSQEGSLQLWNISTKKKLYEFKGWGSSISSCVSSPALDVV-AVGCSDGKIHVHNVRYDEELVTFTHSMRGAVTAL 230 (809)
Q Consensus 152 ~~l~~~~~dg~i~lwd~~~~~~~~~~~~~~~~I~~l~~sp~~~~l-a~g~~dg~i~iwd~~~~~~~~~~~~~~~~~V~~l 230 (809)
+.+++++.|+.|.+||+.+++.+..+..+. .+.+++|+|+++.+ ++++.++.|++||..+++.+..+..+ ..+..+
T Consensus 2 ~~~~s~~~d~~v~~~d~~t~~~~~~~~~~~-~~~~l~~~~dg~~l~~~~~~~~~v~~~d~~~~~~~~~~~~~--~~~~~~ 78 (300)
T TIGR03866 2 KAYVSNEKDNTISVIDTATLEVTRTFPVGQ-RPRGITLSKDGKLLYVCASDSDTIQVIDLATGEVIGTLPSG--PDPELF 78 (300)
T ss_pred cEEEEecCCCEEEEEECCCCceEEEEECCC-CCCceEECCCCCEEEEEECCCCeEEEEECCCCcEEEeccCC--CCccEE
Confidence 457888999999999999999999988754 46789999999876 56677899999999999887776653 335788
Q ss_pred EEecCCCCEEEEEcCCCcEEEEECCCceeeeeeecccccceEEEEEecCCCEEEEEcCCC-cEEEEEeeCCCCCceeEEe
Q 003579 231 AFSSDGQPLLASGASSGVISIWNLEKRRLQSVIREAHDNAIISLHFFANEPVLMSASADN-SIKMWIFDTTDGDPRLLRF 309 (809)
Q Consensus 231 ~fs~dg~~~lasg~~dg~I~iwdl~~~~~~~~~~~~h~~~V~~l~~~~~~~~l~s~s~d~-~i~vw~~~~~~~~~~~~~~ 309 (809)
+|+|+++.++++++.++.|++||+.+++.+..+. +...+.+++|+|++.++++++.++ .+.+|+.... .....
T Consensus 79 ~~~~~g~~l~~~~~~~~~l~~~d~~~~~~~~~~~--~~~~~~~~~~~~dg~~l~~~~~~~~~~~~~d~~~~----~~~~~ 152 (300)
T TIGR03866 79 ALHPNGKILYIANEDDNLVTVIDIETRKVLAEIP--VGVEPEGMAVSPDGKIVVNTSETTNMAHFIDTKTY----EIVDN 152 (300)
T ss_pred EECCCCCEEEEEcCCCCeEEEEECCCCeEEeEee--CCCCcceEEECCCCCEEEEEecCCCeEEEEeCCCC----eEEEE
Confidence 9999998444555678999999999988777765 334578899999999999888765 4566665443 22222
Q ss_pred ccCCCCCCeeEEEecCCCEEEEE-ECCCCEEEEEeeecccceecchhhHHHHHhhccchhhhhccCceeEEeeccccccc
Q 003579 310 RSGHSAPPLCIRFYANGRHILSA-GQDRAFRLFSVIQDQQSRELSQRHVAKRARKLKMKEEELKLKPVIAFDCAEIRERD 388 (809)
Q Consensus 310 ~~~h~~~v~~i~~~~~~~~l~s~-~~dg~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~ 388 (809)
.. ....+.++.|++++++++.+ ..++.+.+||+.+.+....+...
T Consensus 153 ~~-~~~~~~~~~~s~dg~~l~~~~~~~~~v~i~d~~~~~~~~~~~~~--------------------------------- 198 (300)
T TIGR03866 153 VL-VDQRPRFAEFTADGKELWVSSEIGGTVSVIDVATRKVIKKITFE--------------------------------- 198 (300)
T ss_pred EE-cCCCccEEEECCCCCEEEEEcCCCCEEEEEEcCcceeeeeeeec---------------------------------
Confidence 21 23346789999999988655 46899999998766443322100
Q ss_pred cceeEEeecCCceEEEEEeeeeeecceeeecCCCCCCCeEEEEEcCCCCEEEEE-eCCCcEEEEECCCCceeeeeeCccc
Q 003579 389 WCNVVTCHMDTAQAYVWRLQNFVLGEHILRPCPENPTAVKACTISACGNFAVLG-TAGGWIERFNLQSGISRGSYLDMSE 467 (809)
Q Consensus 389 ~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~v~~v~~s~~g~~l~~g-~~~g~i~i~~~~~~~~~~~~~~~~~ 467 (809)
. ............++++|+|++++++ ..++.+.+||+.+++.....
T Consensus 199 --------------------~--------~~~~~~~~~~~~i~~s~dg~~~~~~~~~~~~i~v~d~~~~~~~~~~----- 245 (300)
T TIGR03866 199 --------------------I--------PGVHPEAVQPVGIKLTKDGKTAFVALGPANRVAVVDAKTYEVLDYL----- 245 (300)
T ss_pred --------------------c--------cccccccCCccceEECCCCCEEEEEcCCCCeEEEEECCCCcEEEEE-----
Confidence 0 0000001234468899999987664 45678999999988776544
Q ss_pred ccccCccccEEEEEEcCCCCEEEEE-eCcCeEEEEECCCCceeeeeecCCCeEEEEEee
Q 003579 468 RSNYAHNGEVVGVACDSTNTLMISA-GYHGDIKVWDFKGRDLKSRWEVGCSLVKIVYHR 525 (809)
Q Consensus 468 ~~~~~h~~~v~~l~~~~~~~~l~s~-~~dg~i~iwd~~~~~~~~~~~~~~~i~~~~~s~ 525 (809)
.+...+.+++|+|++++|+++ +.+|.|++||+.+++.+..++.+...+.++++|
T Consensus 246 ----~~~~~~~~~~~~~~g~~l~~~~~~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~ 300 (300)
T TIGR03866 246 ----LVGQRVWQLAFTPDEKYLLTTNGVSNDVSVIDVAALKVIKSIKVGRLPWGVVVRP 300 (300)
T ss_pred ----EeCCCcceEEECCCCCEEEEEcCCCCeEEEEECCCCcEEEEEEcccccceeEeCC
Confidence 234578899999999999876 468999999999999999999888888888765
No 130
>PTZ00420 coronin; Provisional
Probab=99.93 E-value=2.2e-23 Score=225.22 Aligned_cols=227 Identities=15% Similarity=0.173 Sum_probs=180.1
Q ss_pred EeCCCcEEEEEcCCCccccceeeeEEcCCccccEEEEeCC-CCCCEEEEEeCCCeEEEEeCCCCc--------eEEEEcC
Q 003579 109 IDIDGNMFIWAFKGIEENLAPVGHVKLDDKFTPTCIMHPD-TYLNKVIVGSQEGSLQLWNISTKK--------KLYEFKG 179 (809)
Q Consensus 109 ~~~dg~i~vWd~~~~~~~~~~~~~~~~~~~~~~~~~~~p~-~~~~~l~~~~~dg~i~lwd~~~~~--------~~~~~~~ 179 (809)
|+.++.|++|+...... +..+..|...+..+.|+|. + +.|++|+.||+|++||+.++. ++..+.+
T Consensus 50 GG~~gvI~L~~~~r~~~----v~~L~gH~~~V~~lafsP~~~--~lLASgS~DgtIrIWDi~t~~~~~~~i~~p~~~L~g 123 (568)
T PTZ00420 50 GGLIGAIRLENQMRKPP----VIKLKGHTSSILDLQFNPCFS--EILASGSEDLTIRVWEIPHNDESVKEIKDPQCILKG 123 (568)
T ss_pred CCceeEEEeeecCCCce----EEEEcCCCCCEEEEEEcCCCC--CEEEEEeCCCeEEEEECCCCCccccccccceEEeec
Confidence 55678899999876543 6777888888889999997 5 789999999999999997642 3456889
Q ss_pred CCCCEEEEEEcCCCCE-EEEEeCCCeEEEEEeeCCeEEEEEeccCCCcEEEEEEecCCCCEEEEEcCCCcEEEEECCCce
Q 003579 180 WGSSISSCVSSPALDV-VAVGCSDGKIHVHNVRYDEELVTFTHSMRGAVTALAFSSDGQPLLASGASSGVISIWNLEKRR 258 (809)
Q Consensus 180 ~~~~I~~l~~sp~~~~-la~g~~dg~i~iwd~~~~~~~~~~~~~~~~~V~~l~fs~dg~~~lasg~~dg~I~iwdl~~~~ 258 (809)
|...|.+++|+|++.. |++++.|++|+|||+++++.+..+.. ...|.+++|+++|. +|++++.|+.|+|||+++++
T Consensus 124 H~~~V~sVaf~P~g~~iLaSgS~DgtIrIWDl~tg~~~~~i~~--~~~V~SlswspdG~-lLat~s~D~~IrIwD~Rsg~ 200 (568)
T PTZ00420 124 HKKKISIIDWNPMNYYIMCSSGFDSFVNIWDIENEKRAFQINM--PKKLSSLKWNIKGN-LLSGTCVGKHMHIIDPRKQE 200 (568)
T ss_pred CCCcEEEEEECCCCCeEEEEEeCCCeEEEEECCCCcEEEEEec--CCcEEEEEECCCCC-EEEEEecCCEEEEEECCCCc
Confidence 9999999999999875 57899999999999999988877753 46899999999999 88999999999999999999
Q ss_pred eeeeeecccccceEEE-----EEecCCCEEEEEcCCC----cEEEEEeeCCCCCceeEEeccCCCCCCeeEEEecCCCEE
Q 003579 259 LQSVIREAHDNAIISL-----HFFANEPVLMSASADN----SIKMWIFDTTDGDPRLLRFRSGHSAPPLCIRFYANGRHI 329 (809)
Q Consensus 259 ~~~~~~~~h~~~V~~l-----~~~~~~~~l~s~s~d~----~i~vw~~~~~~~~~~~~~~~~~h~~~v~~i~~~~~~~~l 329 (809)
.+..+. +|.+.+... .|++++.+|++++.|+ +|++||++.... +........+.+.+......++|.++
T Consensus 201 ~i~tl~-gH~g~~~s~~v~~~~fs~d~~~IlTtG~d~~~~R~VkLWDlr~~~~-pl~~~~ld~~~~~L~p~~D~~tg~l~ 278 (568)
T PTZ00420 201 IASSFH-IHDGGKNTKNIWIDGLGGDDNYILSTGFSKNNMREMKLWDLKNTTS-ALVTMSIDNASAPLIPHYDESTGLIY 278 (568)
T ss_pred EEEEEe-cccCCceeEEEEeeeEcCCCCEEEEEEcCCCCccEEEEEECCCCCC-ceEEEEecCCccceEEeeeCCCCCEE
Confidence 988887 898765433 3457888999988774 799999875432 12222333333433334344568899
Q ss_pred EEEECCCCEEEEEeeec
Q 003579 330 LSAGQDRAFRLFSVIQD 346 (809)
Q Consensus 330 ~s~~~dg~i~~wd~~~~ 346 (809)
++|+.|+.|++|++..+
T Consensus 279 lsGkGD~tIr~~e~~~~ 295 (568)
T PTZ00420 279 LIGKGDGNCRYYQHSLG 295 (568)
T ss_pred EEEECCCeEEEEEccCC
Confidence 99999999999998654
No 131
>KOG0650 consensus WD40 repeat nucleolar protein Bop1, involved in ribosome biogenesis [Translation, ribosomal structure and biogenesis]
Probab=99.93 E-value=6.8e-24 Score=214.31 Aligned_cols=317 Identities=15% Similarity=0.241 Sum_probs=242.0
Q ss_pred EEEEcCCCCCEEEEEEcCCCCEEEEEeCCCeEEEEEeeCCeEEEEEeccCCCcEEEEEEecCCCC-EEEEEcCCCcEEEE
Q 003579 174 LYEFKGWGSSISSCVSSPALDVVAVGCSDGKIHVHNVRYDEELVTFTHSMRGAVTALAFSSDGQP-LLASGASSGVISIW 252 (809)
Q Consensus 174 ~~~~~~~~~~I~~l~~sp~~~~la~g~~dg~i~iwd~~~~~~~~~~~~~~~~~V~~l~fs~dg~~-~lasg~~dg~I~iw 252 (809)
-..+.+|.+.|.++...|.|.+||+|+.||+|+||.+.+|.++.++... +.|.|++|+|.+.. +||++- ...+.|-
T Consensus 393 ~lvyrGHtg~Vr~iSvdp~G~wlasGsdDGtvriWEi~TgRcvr~~~~d--~~I~~vaw~P~~~~~vLAvA~-~~~~~iv 469 (733)
T KOG0650|consen 393 ALVYRGHTGLVRSISVDPSGEWLASGSDDGTVRIWEIATGRCVRTVQFD--SEIRSVAWNPLSDLCVLAVAV-GECVLIV 469 (733)
T ss_pred eeeEeccCCeEEEEEecCCcceeeecCCCCcEEEEEeecceEEEEEeec--ceeEEEEecCCCCceeEEEEe-cCceEEe
Confidence 3457899999999999999999999999999999999999999999874 78999999998764 444444 4447676
Q ss_pred ECCCceeeeeeecccccceEEEEEecCCCEEEEE----cCCCcEEEEEeeCCCCCceeEEeccCCCCCCeeEEEecCCCE
Q 003579 253 NLEKRRLQSVIREAHDNAIISLHFFANEPVLMSA----SADNSIKMWIFDTTDGDPRLLRFRSGHSAPPLCIRFYANGRH 328 (809)
Q Consensus 253 dl~~~~~~~~~~~~h~~~V~~l~~~~~~~~l~s~----s~d~~i~vw~~~~~~~~~~~~~~~~~h~~~v~~i~~~~~~~~ 328 (809)
+..-|..+..-. ....|+++ ..|+.+..|.-...+....-+...-.|..+|..+.|+..|.|
T Consensus 470 np~~G~~~e~~~--------------t~ell~~~~~~~~p~~~~~~W~~~~~~e~~~~v~~~I~~~k~i~~vtWHrkGDY 535 (733)
T KOG0650|consen 470 NPIFGDRLEVGP--------------TKELLASAPNESEPDAAVVTWSRASLDELEKGVCIVIKHPKSIRQVTWHRKGDY 535 (733)
T ss_pred Cccccchhhhcc--------------hhhhhhcCCCccCCcccceeechhhhhhhccceEEEEecCCccceeeeecCCce
Confidence 655442211110 11122222 235678888654332222224445578999999999999999
Q ss_pred EEEEECC---CCEEEEEeeecccceecchhhHHHHHhhccchhhhhccCceeEEeeccccccccceeEEeecCCceEEEE
Q 003579 329 ILSAGQD---RAFRLFSVIQDQQSRELSQRHVAKRARKLKMKEEELKLKPVIAFDCAEIRERDWCNVVTCHMDTAQAYVW 405 (809)
Q Consensus 329 l~s~~~d---g~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~w 405 (809)
|++...+ ..+.+.++......
T Consensus 536 latV~~~~~~~~VliHQLSK~~sQ-------------------------------------------------------- 559 (733)
T KOG0650|consen 536 LATVMPDSGNKSVLIHQLSKRKSQ-------------------------------------------------------- 559 (733)
T ss_pred EEEeccCCCcceEEEEeccccccc--------------------------------------------------------
Confidence 9987654 35666665433221
Q ss_pred EeeeeeecceeeecCCCCCCCeEEEEEcCCCCEEEEEeCCCcEEEEECCCCceeeeeeCcccccccCccccEEEEEEcCC
Q 003579 406 RLQNFVLGEHILRPCPENPTAVKACTISACGNFAVLGTAGGWIERFNLQSGISRGSYLDMSERSNYAHNGEVVGVACDST 485 (809)
Q Consensus 406 ~~~~~~~~~~~~~~~~~~~~~v~~v~~s~~g~~l~~g~~~g~i~i~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~ 485 (809)
.+.....+.+.++.|+|...++++++.. .|++||+..+.....+. .....|..++++|.
T Consensus 560 ------------~PF~kskG~vq~v~FHPs~p~lfVaTq~-~vRiYdL~kqelvKkL~--------tg~kwiS~msihp~ 618 (733)
T KOG0650|consen 560 ------------SPFRKSKGLVQRVKFHPSKPYLFVATQR-SVRIYDLSKQELVKKLL--------TGSKWISSMSIHPN 618 (733)
T ss_pred ------------CchhhcCCceeEEEecCCCceEEEEecc-ceEEEehhHHHHHHHHh--------cCCeeeeeeeecCC
Confidence 1111234789999999999999998764 69999999988877665 55678999999999
Q ss_pred CCEEEEEeCcCeEEEEECCCC-ceeeeeecC-CCeEEEEEeeCCCEEEEEeCCCeEEEEEcC------CC---eEEEEEe
Q 003579 486 NTLMISAGYHGDIKVWDFKGR-DLKSRWEVG-CSLVKIVYHRVNGLLATVADDLVIRLFDVV------AL---RMVRKFE 554 (809)
Q Consensus 486 ~~~l~s~~~dg~i~iwd~~~~-~~~~~~~~~-~~i~~~~~s~~~~~la~~~~d~~I~v~d~~------~~---~~~~~~~ 554 (809)
|..|+.++.|+.+..+|+.-+ ++.+++.++ ..+++++||+.-.++|+|++||++.|+.-. .. -++..+.
T Consensus 619 GDnli~gs~d~k~~WfDldlsskPyk~lr~H~~avr~Va~H~ryPLfas~sdDgtv~Vfhg~VY~Dl~qnpliVPlK~L~ 698 (733)
T KOG0650|consen 619 GDNLILGSYDKKMCWFDLDLSSKPYKTLRLHEKAVRSVAFHKRYPLFASGSDDGTVIVFHGMVYNDLLQNPLIVPLKRLR 698 (733)
T ss_pred CCeEEEecCCCeeEEEEcccCcchhHHhhhhhhhhhhhhhccccceeeeecCCCcEEEEeeeeehhhhcCCceEeeeecc
Confidence 999999999999999999744 566666665 789999999999999999999999998422 11 3477888
Q ss_pred cCCCC----eeeEEECCCCCEEEEEeCCCeEEEE
Q 003579 555 GHTDR----ITDFCFSEDGKWLLSSGMDGSLRIW 584 (809)
Q Consensus 555 ~h~~~----I~~l~fspdg~~l~s~s~D~~I~vw 584 (809)
||... |.+..|+|...||++++.||+||+|
T Consensus 699 gH~~~~~~gVLd~~wHP~qpWLfsAGAd~tirlf 732 (733)
T KOG0650|consen 699 GHEKTNDLGVLDTIWHPRQPWLFSAGADGTIRLF 732 (733)
T ss_pred CceeecccceEeecccCCCceEEecCCCceEEee
Confidence 99766 9999999999999999999999998
No 132
>KOG1332 consensus Vesicle coat complex COPII, subunit SEC13 [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.93 E-value=2.9e-24 Score=193.75 Aligned_cols=237 Identities=19% Similarity=0.258 Sum_probs=191.9
Q ss_pred CCCEEEEEeCCCeEEEEeCCCC---ceEEEEcCCCCCEEEEEEcC--CCCEEEEEeCCCeEEEEEeeCCeE--EEEEecc
Q 003579 150 YLNKVIVGSQEGSLQLWNISTK---KKLYEFKGWGSSISSCVSSP--ALDVVAVGCSDGKIHVHNVRYDEE--LVTFTHS 222 (809)
Q Consensus 150 ~~~~l~~~~~dg~i~lwd~~~~---~~~~~~~~~~~~I~~l~~sp--~~~~la~g~~dg~i~iwd~~~~~~--~~~~~~~ 222 (809)
|.++|++++.|++|+|+.+++. +++.++.+|.++|..++|.. .|.+||+++.||.|.||.-..++- ......
T Consensus 22 ygkrlATcsSD~tVkIf~v~~n~~s~ll~~L~Gh~GPVwqv~wahPk~G~iLAScsYDgkVIiWke~~g~w~k~~e~~~- 100 (299)
T KOG1332|consen 22 YGKRLATCSSDGTVKIFEVRNNGQSKLLAELTGHSGPVWKVAWAHPKFGTILASCSYDGKVIIWKEENGRWTKAYEHAA- 100 (299)
T ss_pred hcceeeeecCCccEEEEEEcCCCCceeeeEecCCCCCeeEEeecccccCcEeeEeecCceEEEEecCCCchhhhhhhhh-
Confidence 4489999999999999998754 57889999999999999986 799999999999999999887742 333333
Q ss_pred CCCcEEEEEEecCCC-CEEEEEcCCCcEEEEECCCc--eeeeeeecccccceEEEEEecC---C-----------CEEEE
Q 003579 223 MRGAVTALAFSSDGQ-PLLASGASSGVISIWNLEKR--RLQSVIREAHDNAIISLHFFAN---E-----------PVLMS 285 (809)
Q Consensus 223 ~~~~V~~l~fs~dg~-~~lasg~~dg~I~iwdl~~~--~~~~~~~~~h~~~V~~l~~~~~---~-----------~~l~s 285 (809)
|...|++++|.|.+- .+|++++.||.|.|.+.++. -....+..+|.-.|++++|.|. | +.|++
T Consensus 101 h~~SVNsV~wapheygl~LacasSDG~vsvl~~~~~g~w~t~ki~~aH~~GvnsVswapa~~~g~~~~~~~~~~~krlvS 180 (299)
T KOG1332|consen 101 HSASVNSVAWAPHEYGLLLACASSDGKVSVLTYDSSGGWTTSKIVFAHEIGVNSVSWAPASAPGSLVDQGPAAKVKRLVS 180 (299)
T ss_pred hcccceeecccccccceEEEEeeCCCcEEEEEEcCCCCccchhhhhccccccceeeecCcCCCccccccCcccccceeec
Confidence 478999999999742 37899999999999987754 3444455589999999999986 4 46999
Q ss_pred EcCCCcEEEEEeeCCCCCceeEEeccCCCCCCeeEEEecC----CCEEEEEECCCCEEEEEeeecccceecchhhHHHHH
Q 003579 286 ASADNSIKMWIFDTTDGDPRLLRFRSGHSAPPLCIRFYAN----GRHILSAGQDRAFRLFSVIQDQQSRELSQRHVAKRA 361 (809)
Q Consensus 286 ~s~d~~i~vw~~~~~~~~~~~~~~~~~h~~~v~~i~~~~~----~~~l~s~~~dg~i~~wd~~~~~~~~~~~~~~~~~~~ 361 (809)
|+.|+.|+||+++.. ...+.+.+.+|.+.|..++|.|. ..+|++|++||++.+|.........+
T Consensus 181 gGcDn~VkiW~~~~~--~w~~e~~l~~H~dwVRDVAwaP~~gl~~s~iAS~SqDg~viIwt~~~e~e~wk---------- 248 (299)
T KOG1332|consen 181 GGCDNLVKIWKFDSD--SWKLERTLEGHKDWVRDVAWAPSVGLPKSTIASCSQDGTVIIWTKDEEYEPWK---------- 248 (299)
T ss_pred cCCccceeeeecCCc--chhhhhhhhhcchhhhhhhhccccCCCceeeEEecCCCcEEEEEecCccCccc----------
Confidence 999999999988765 45566678999999999999993 35899999999999998653221111
Q ss_pred hhccchhhhhccCceeEEeeccccccccceeEEeecCCceEEEEEeeeeeecceeeecCCCCCCCeEEEEEcCCCCEEEE
Q 003579 362 RKLKMKEEELKLKPVIAFDCAEIRERDWCNVVTCHMDTAQAYVWRLQNFVLGEHILRPCPENPTAVKACTISACGNFAVL 441 (809)
Q Consensus 362 ~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~v~~v~~s~~g~~l~~ 441 (809)
.......+..+..+.||.+|++|++
T Consensus 249 -------------------------------------------------------~tll~~f~~~~w~vSWS~sGn~LaV 273 (299)
T KOG1332|consen 249 -------------------------------------------------------KTLLEEFPDVVWRVSWSLSGNILAV 273 (299)
T ss_pred -------------------------------------------------------ccccccCCcceEEEEEeccccEEEE
Confidence 0011123478999999999999999
Q ss_pred EeCCCcEEEEECC
Q 003579 442 GTAGGWIERFNLQ 454 (809)
Q Consensus 442 g~~~g~i~i~~~~ 454 (809)
++.|+.|.+|.-.
T Consensus 274 s~GdNkvtlwke~ 286 (299)
T KOG1332|consen 274 SGGDNKVTLWKEN 286 (299)
T ss_pred ecCCcEEEEEEeC
Confidence 9999999999743
No 133
>KOG1963 consensus WD40 repeat protein [General function prediction only]
Probab=99.92 E-value=6.3e-22 Score=210.27 Aligned_cols=492 Identities=17% Similarity=0.239 Sum_probs=315.7
Q ss_pred EEeCC--eEEEEECCeEEEEECC--eeEEEEccccccEEEEEEe-----CCEEEEEeCCCcEEEEEcCCCccccceeeeE
Q 003579 63 ASYRD--YTFAAYGNHIAVVKRA--HQVATWSRHSAKVNLLLLF-----GEHILSIDIDGNMFIWAFKGIEENLAPVGHV 133 (809)
Q Consensus 63 a~~~~--~~~~a~g~~i~vw~~~--~~~~~~~~h~~~V~~l~~~-----g~~l~s~~~dg~i~vWd~~~~~~~~~~~~~~ 133 (809)
.||+| ..|+.+++.|.||... ..+..+.+|..+++.+.++ -.++++++.||.|++||...+++ ++++
T Consensus 23 vfSnD~k~l~~~~~~~V~VyS~~Tg~~i~~l~~~~a~l~s~~~~~~~~~~~~~~~~sl~G~I~vwd~~~~~L----lkt~ 98 (792)
T KOG1963|consen 23 VFSNDAKFLFLCTGNFVKVYSTATGECITSLEDHTAPLTSVIVLPSSENANYLIVCSLDGTIRVWDWSDGEL----LKTF 98 (792)
T ss_pred ccccCCcEEEEeeCCEEEEEecchHhhhhhcccccCccceeeecCCCccceEEEEEecCccEEEecCCCcEE----EEEE
Confidence 47788 4556779999999764 4455699999999999873 26788999999999999999888 4444
Q ss_pred EcCCccccEEEEeC---CCCCCEEE-EEeCCCe-EEEEeCCCCceE-------------EEEcCCCCCEEEEEEcCCCCE
Q 003579 134 KLDDKFTPTCIMHP---DTYLNKVI-VGSQEGS-LQLWNISTKKKL-------------YEFKGWGSSISSCVSSPALDV 195 (809)
Q Consensus 134 ~~~~~~~~~~~~~p---~~~~~~l~-~~~~dg~-i~lwd~~~~~~~-------------~~~~~~~~~I~~l~~sp~~~~ 195 (809)
..+..... ..+.| +. ...+ .+..+.. +.....+..+.. ..+..|.. -.++.+++.|.+
T Consensus 99 ~~~~~v~~-~~~~~~~a~~--s~~~~~s~~~~~~~~~~s~~~~~q~~~~~~~t~~~~~~d~~~~~~~-~~~I~~~~~ge~ 174 (792)
T KOG1963|consen 99 DNNLPVHA-LVYKPAQADI--SANVYVSVEDYSILTTFSKKLSKQSSRFVLATFDSAKGDFLKEHQE-PKSIVDNNSGEF 174 (792)
T ss_pred ecCCceeE-EEechhHhCc--cceeEeecccceeeeecccccccceeeeEeeeccccchhhhhhhcC-CccEEEcCCceE
Confidence 43322111 11101 11 0111 1111111 111111111111 11122222 467788888877
Q ss_pred EEEEeCCCeEEEEEeeCCeEE---EEEeccCCCcEEEEEEecCCCCEEEEEcCCCcEEEEECCC---ceeeeeeeccccc
Q 003579 196 VAVGCSDGKIHVHNVRYDEEL---VTFTHSMRGAVTALAFSSDGQPLLASGASSGVISIWNLEK---RRLQSVIREAHDN 269 (809)
Q Consensus 196 la~g~~dg~i~iwd~~~~~~~---~~~~~~~~~~V~~l~fs~dg~~~lasg~~dg~I~iwdl~~---~~~~~~~~~~h~~ 269 (809)
.+.... ..+.+|+..++... +....+|...+++.+++|.++ ++|+|..||.|.+|.--. .....++..=|..
T Consensus 175 ~~i~~~-~~~~~~~v~~~~~~~~~~~~~~~Htf~~t~~~~spn~~-~~Aa~d~dGrI~vw~d~~~~~~~~t~t~lHWH~~ 252 (792)
T KOG1963|consen 175 KGIVHM-CKIHIYFVPKHTKHTSSRDITVHHTFNITCVALSPNER-YLAAGDSDGRILVWRDFGSSDDSETCTLLHWHHD 252 (792)
T ss_pred EEEEEe-eeEEEEEecccceeeccchhhhhhcccceeEEeccccc-eEEEeccCCcEEEEeccccccccccceEEEeccc
Confidence 766654 56889998875511 112234566789999999999 999999999999996332 2333333336888
Q ss_pred ceEEEEEecCCCEEEEEcCCCcEEEEEeeCCCCCceeEEeccCCCCCCeeEEEecCCCEEEEEECCCCEEEEEeeecccc
Q 003579 270 AIISLHFFANEPVLMSASADNSIKMWIFDTTDGDPRLLRFRSGHSAPPLCIRFYANGRHILSAGQDRAFRLFSVIQDQQS 349 (809)
Q Consensus 270 ~V~~l~~~~~~~~l~s~s~d~~i~vw~~~~~~~~~~~~~~~~~h~~~v~~i~~~~~~~~l~s~~~dg~i~~wd~~~~~~~ 349 (809)
.|.++.|+++|.+|++||..+.+.+|.+.++. .+.+ ..-.++|..+.++||+...+....|..|.+....+....
T Consensus 253 ~V~~L~fS~~G~~LlSGG~E~VLv~Wq~~T~~--kqfL---PRLgs~I~~i~vS~ds~~~sl~~~DNqI~li~~~dl~~k 327 (792)
T KOG1963|consen 253 EVNSLSFSSDGAYLLSGGREGVLVLWQLETGK--KQFL---PRLGSPILHIVVSPDSDLYSLVLEDNQIHLIKASDLEIK 327 (792)
T ss_pred ccceeEEecCCceEeecccceEEEEEeecCCC--cccc---cccCCeeEEEEEcCCCCeEEEEecCceEEEEeccchhhh
Confidence 99999999999999999999999999887764 2333 345689999999999999999999999999877554443
Q ss_pred eecchhhHHHHHhhccchhhhhccCceeEEeeccccccccceeEEeecCCceEEEEEeeeeeecceeeecCCCCCCCeEE
Q 003579 350 RELSQRHVAKRARKLKMKEEELKLKPVIAFDCAEIRERDWCNVVTCHMDTAQAYVWRLQNFVLGEHILRPCPENPTAVKA 429 (809)
Q Consensus 350 ~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~v~~ 429 (809)
..++.-.... -.......+-.+.
T Consensus 328 ~tIsgi~~~~---------------------------------------------------------~~~k~~~~~l~t~ 350 (792)
T KOG1963|consen 328 STISGIKPPT---------------------------------------------------------PSTKTRPQSLTTG 350 (792)
T ss_pred hhccCccCCC---------------------------------------------------------cccccccccccee
Confidence 3332210000 0000112356778
Q ss_pred EEEcCCCCEEEEEeCCCcEEEEECCCCceeeeeeCccccc---ccCccccEEEEEEcCCCCEEEEEe--------Cc--C
Q 003579 430 CTISACGNFAVLGTAGGWIERFNLQSGISRGSYLDMSERS---NYAHNGEVVGVACDSTNTLMISAG--------YH--G 496 (809)
Q Consensus 430 v~~s~~g~~l~~g~~~g~i~i~~~~~~~~~~~~~~~~~~~---~~~h~~~v~~l~~~~~~~~l~s~~--------~d--g 496 (809)
++++|.-+.++..+..|.|.+||+.+......+....... ...+.-.++.++.+-.|.+++|.- .| -
T Consensus 351 ~~idpr~~~~vln~~~g~vQ~ydl~td~~i~~~~v~~~n~~~~~~n~~v~itav~~~~~gs~maT~E~~~d~~~~~~~e~ 430 (792)
T KOG1963|consen 351 VSIDPRTNSLVLNGHPGHVQFYDLYTDSTIYKLQVCDENYSDGDVNIQVGITAVARSRFGSWMATLEARIDKFNFFDGEV 430 (792)
T ss_pred EEEcCCCCceeecCCCceEEEEeccccceeeeEEEEeecccCCcceeEEeeeeehhhccceEEEEeeeeehhhhccCceE
Confidence 8999988889999999999999999887776554222111 113445678888888899998864 23 3
Q ss_pred eEEEEECCCCce----eeeee--cCCCeEEEE-EeeCCC-EEEEEeCCCeEEEEEcCCC----------eEEEEEecCCC
Q 003579 497 DIKVWDFKGRDL----KSRWE--VGCSLVKIV-YHRVNG-LLATVADDLVIRLFDVVAL----------RMVRKFEGHTD 558 (809)
Q Consensus 497 ~i~iwd~~~~~~----~~~~~--~~~~i~~~~-~s~~~~-~la~~~~d~~I~v~d~~~~----------~~~~~~~~h~~ 558 (809)
.+++|-...... ...+. ++..+...+ .++... ..++++.||.+++|-+... .+...-.-|..
T Consensus 431 ~LKFW~~n~~~kt~~L~T~I~~PH~~~~vat~~~~~~rs~~~vta~~dg~~KiW~~~~~~n~~k~~s~W~c~~i~sy~k~ 510 (792)
T KOG1963|consen 431 SLKFWQYNPNSKTFILNTKINNPHGNAFVATIFLNPTRSVRCVTASVDGDFKIWVFTDDSNIYKKSSNWTCKAIGSYHKT 510 (792)
T ss_pred EEEEEEEcCCcceeEEEEEEecCCCceeEEEEEecCcccceeEEeccCCeEEEEEEecccccCcCccceEEeeeeccccC
Confidence 588998765433 23332 223333333 333333 8899999999999987322 22222223889
Q ss_pred CeeeEEECCCCCEEEEEeCCCeEEEEEcCC-ccEEEEeeeCc-ceEEEEEcC----CCCeEEEEEeCCCeEEEeecCc
Q 003579 559 RITDFCFSEDGKWLLSSGMDGSLRIWDVIL-ARQIDAIHVDV-SITALSLSP----NMDVLATAHVDQNGVYLWVNRC 630 (809)
Q Consensus 559 ~I~~l~fspdg~~l~s~s~D~~I~vwd~~~-~~~i~~~~~~~-~v~~l~~sp----dg~~lat~~~d~~~i~lW~~~~ 630 (809)
++++++||.||..| +++.|++|.+||..+ ..+........ ++..+.+.. ++. +..++ .. .+.+|++..
T Consensus 511 ~i~a~~fs~dGsll-a~s~~~~Itiwd~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~-~~-~l~~WNll~ 584 (792)
T KOG1963|consen 511 PITALCFSQDGSLL-AVSFDDTITIWDYDTKNELLCTEGSRNWPIAELLFTAQTQNDGA-LVHAT-QQ-RLSVWNLLS 584 (792)
T ss_pred cccchhhcCCCcEE-EEecCCEEEEecCCChhhhhccccccccchHhHhhhcccccccc-eeecc-Cc-eEehHhhhh
Confidence 99999999999655 566789999999988 44333332211 233333322 332 22222 22 588998753
No 134
>KOG1274 consensus WD40 repeat protein [General function prediction only]
Probab=99.92 E-value=1.4e-20 Score=200.30 Aligned_cols=245 Identities=16% Similarity=0.260 Sum_probs=198.3
Q ss_pred ccccccEEEEEE--eCCEEEEEeCCCcEEEEEcCCCccccceeeeEEcCCccccEEEEeCCCCCCEEEEEeCCCeEEEEe
Q 003579 90 SRHSAKVNLLLL--FGEHILSIDIDGNMFIWAFKGIEENLAPVGHVKLDDKFTPTCIMHPDTYLNKVIVGSQEGSLQLWN 167 (809)
Q Consensus 90 ~~h~~~V~~l~~--~g~~l~s~~~dg~i~vWd~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~l~~~~~dg~i~lwd 167 (809)
.+|+..-+.|++ +|.+|++|+.||.|++|+....+.. ..++..+...+.. +.-.. +++++|+.+++|.+|.
T Consensus 10 yaht~G~t~i~~d~~gefi~tcgsdg~ir~~~~~sd~e~---P~ti~~~g~~v~~--ia~~s--~~f~~~s~~~tv~~y~ 82 (933)
T KOG1274|consen 10 YAHTGGLTLICYDPDGEFICTCGSDGDIRKWKTNSDEEE---PETIDISGELVSS--IACYS--NHFLTGSEQNTVLRYK 82 (933)
T ss_pred hhccCceEEEEEcCCCCEEEEecCCCceEEeecCCcccC---CchhhccCceeEE--Eeecc--cceEEeeccceEEEee
Confidence 468888888887 6999999999999999998776321 2222223333322 33333 6899999999999999
Q ss_pred CCCCceEEEEcCCCCCEEEEEEcCCCCEEEEEeCCCeEEEEEeeCCeEEEEEeccCCCcEEEEEEecCCCCEEEEEcCCC
Q 003579 168 ISTKKKLYEFKGWGSSISSCVSSPALDVVAVGCSDGKIHVHNVRYDEELVTFTHSMRGAVTALAFSSDGQPLLASGASSG 247 (809)
Q Consensus 168 ~~~~~~~~~~~~~~~~I~~l~~sp~~~~la~g~~dg~i~iwd~~~~~~~~~~~~~~~~~V~~l~fs~dg~~~lasg~~dg 247 (809)
+.+++.--.+....-++++++++-+|.++|.|+.|-.|++-++........+..+ .++|.++.|+|.+. +||+.+-||
T Consensus 83 fps~~~~~iL~Rftlp~r~~~v~g~g~~iaagsdD~~vK~~~~~D~s~~~~lrgh-~apVl~l~~~p~~~-fLAvss~dG 160 (933)
T KOG1274|consen 83 FPSGEEDTILARFTLPIRDLAVSGSGKMIAAGSDDTAVKLLNLDDSSQEKVLRGH-DAPVLQLSYDPKGN-FLAVSSCDG 160 (933)
T ss_pred CCCCCccceeeeeeccceEEEEecCCcEEEeecCceeEEEEeccccchheeeccc-CCceeeeeEcCCCC-EEEEEecCc
Confidence 9988766566666789999999999999999999999999999999988888876 89999999999999 999999999
Q ss_pred cEEEEECCCceeeeeeec------c-cccceEEEEEecCCCEEEEEcCCCcEEEEEeeCCCCCceeEEeccCCCCCCeeE
Q 003579 248 VISIWNLEKRRLQSVIRE------A-HDNAIISLHFFANEPVLMSASADNSIKMWIFDTTDGDPRLLRFRSGHSAPPLCI 320 (809)
Q Consensus 248 ~I~iwdl~~~~~~~~~~~------~-h~~~V~~l~~~~~~~~l~s~s~d~~i~vw~~~~~~~~~~~~~~~~~h~~~v~~i 320 (809)
.|++||+.++.+..++.. . ....+..++|+|++..++..+.|+.|++|+...-... .......|...+.++
T Consensus 161 ~v~iw~~~~~~~~~tl~~v~k~n~~~~s~i~~~~aW~Pk~g~la~~~~d~~Vkvy~r~~we~~--f~Lr~~~~ss~~~~~ 238 (933)
T KOG1274|consen 161 KVQIWDLQDGILSKTLTGVDKDNEFILSRICTRLAWHPKGGTLAVPPVDNTVKVYSRKGWELQ--FKLRDKLSSSKFSDL 238 (933)
T ss_pred eEEEEEcccchhhhhcccCCccccccccceeeeeeecCCCCeEEeeccCCeEEEEccCCceeh--eeecccccccceEEE
Confidence 999999999987766651 1 1456788999999888999999999999976554322 222223344559999
Q ss_pred EEecCCCEEEEEECCCCEEEEEeee
Q 003579 321 RFYANGRHILSAGQDRAFRLFSVIQ 345 (809)
Q Consensus 321 ~~~~~~~~l~s~~~dg~i~~wd~~~ 345 (809)
.|+|.|+||++++.||.|.+||+.+
T Consensus 239 ~wsPnG~YiAAs~~~g~I~vWnv~t 263 (933)
T KOG1274|consen 239 QWSPNGKYIAASTLDGQILVWNVDT 263 (933)
T ss_pred EEcCCCcEEeeeccCCcEEEEeccc
Confidence 9999999999999999999999876
No 135
>KOG4283 consensus Transcription-coupled repair protein CSA, contains WD40 domain [Transcription; Replication, recombination and repair]
Probab=99.92 E-value=6.9e-23 Score=189.63 Aligned_cols=299 Identities=16% Similarity=0.267 Sum_probs=228.9
Q ss_pred cCCCCCEEEEEEcC-CCCEEEEEeCCCeEEEEEeeCCe----------EEEEEe----ccCCCcEEEEEEecCCCCEEEE
Q 003579 178 KGWGSSISSCVSSP-ALDVVAVGCSDGKIHVHNVRYDE----------ELVTFT----HSMRGAVTALAFSSDGQPLLAS 242 (809)
Q Consensus 178 ~~~~~~I~~l~~sp-~~~~la~g~~dg~i~iwd~~~~~----------~~~~~~----~~~~~~V~~l~fs~dg~~~las 242 (809)
..|.+.|.++...+ .|+++++|+.||.|.+||++... .+..+. ..|+-.|.++.|-|-...++.+
T Consensus 40 r~HgGsvNsL~id~tegrymlSGgadgsi~v~Dl~n~t~~e~s~li~k~~c~v~~~h~~~Hky~iss~~WyP~DtGmFts 119 (397)
T KOG4283|consen 40 RPHGGSVNSLQIDLTEGRYMLSGGADGSIAVFDLQNATDYEASGLIAKHKCIVAKQHENGHKYAISSAIWYPIDTGMFTS 119 (397)
T ss_pred ccCCCccceeeeccccceEEeecCCCccEEEEEeccccchhhccceeheeeeccccCCccceeeeeeeEEeeecCceeec
Confidence 46889999999988 58999999999999999997543 111111 2345689999999976668999
Q ss_pred EcCCCcEEEEECCCceeeeeeecccccceEEEEEecCC---CEEEEEcCCCcEEEEEeeCCCCCceeEEeccCCCCCCee
Q 003579 243 GASSGVISIWNLEKRRLQSVIREAHDNAIISLHFFANE---PVLMSASADNSIKMWIFDTTDGDPRLLRFRSGHSAPPLC 319 (809)
Q Consensus 243 g~~dg~I~iwdl~~~~~~~~~~~~h~~~V~~l~~~~~~---~~l~s~s~d~~i~vw~~~~~~~~~~~~~~~~~h~~~v~~ 319 (809)
++-|.++++||.++.+....+. -.+.|.+-+++|-. -++++|..|-.|++.|+..+ .....+.||.+.|.+
T Consensus 120 sSFDhtlKVWDtnTlQ~a~~F~--me~~VYshamSp~a~sHcLiA~gtr~~~VrLCDi~SG----s~sH~LsGHr~~vla 193 (397)
T KOG4283|consen 120 SSFDHTLKVWDTNTLQEAVDFK--MEGKVYSHAMSPMAMSHCLIAAGTRDVQVRLCDIASG----SFSHTLSGHRDGVLA 193 (397)
T ss_pred ccccceEEEeecccceeeEEee--cCceeehhhcChhhhcceEEEEecCCCcEEEEeccCC----cceeeeccccCceEE
Confidence 9999999999999988877776 66778888888743 37778888899999998876 567788999999999
Q ss_pred EEEecCCCE-EEEEECCCCEEEEEeeecccceecchhhHHHHHhhccchhhhhccCceeEEeeccccccccceeEEeecC
Q 003579 320 IRFYANGRH-ILSAGQDRAFRLFSVIQDQQSRELSQRHVAKRARKLKMKEEELKLKPVIAFDCAEIRERDWCNVVTCHMD 398 (809)
Q Consensus 320 i~~~~~~~~-l~s~~~dg~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~ 398 (809)
+.|+|...+ |++|+.||.+++||++.-.
T Consensus 194 V~Wsp~~e~vLatgsaDg~irlWDiRras--------------------------------------------------- 222 (397)
T KOG4283|consen 194 VEWSPSSEWVLATGSADGAIRLWDIRRAS--------------------------------------------------- 222 (397)
T ss_pred EEeccCceeEEEecCCCceEEEEEeeccc---------------------------------------------------
Confidence 999996654 6689999999999986431
Q ss_pred CceEEEEEeeeeeecceeeecCCCCCCCeEEEEEcCCCCEEEEEeCCCcEEEEECCCCceeeeeeCcccccccCccccEE
Q 003579 399 TAQAYVWRLQNFVLGEHILRPCPENPTAVKACTISACGNFAVLGTAGGWIERFNLQSGISRGSYLDMSERSNYAHNGEVV 478 (809)
Q Consensus 399 ~~~~~~w~~~~~~~~~~~~~~~~~~~~~v~~v~~s~~g~~l~~g~~~g~i~i~~~~~~~~~~~~~~~~~~~~~~h~~~v~ 478 (809)
|..++.|...++...... ...+|.+.|.
T Consensus 223 -----------------------------------------------gcf~~lD~hn~k~~p~~~-----~n~ah~gkvn 250 (397)
T KOG4283|consen 223 -----------------------------------------------GCFRVLDQHNTKRPPILK-----TNTAHYGKVN 250 (397)
T ss_pred -----------------------------------------------ceeEEeecccCccCcccc-----ccccccceee
Confidence 112222222221111111 1248999999
Q ss_pred EEEEcCCCCEEEEEeCcCeEEEEECCCCceeeeee----cC---CCeEEEEEeeCCCEEEEEeCCCeEEEEEcCCCeEEE
Q 003579 479 GVACDSTNTLMISAGYHGDIKVWDFKGRDLKSRWE----VG---CSLVKIVYHRVNGLLATVADDLVIRLFDVVALRMVR 551 (809)
Q Consensus 479 ~l~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~----~~---~~i~~~~~s~~~~~la~~~~d~~I~v~d~~~~~~~~ 551 (809)
+++|..++.++++++.|..+++|+..+|+....-. +. ..-..+. +-+...++.--.++.+.++++-.+..++
T Consensus 251 gla~tSd~~~l~~~gtd~r~r~wn~~~G~ntl~~~g~~~~n~~~~~~~~~~-~~~s~vfv~~p~~~~lall~~~sgs~ir 329 (397)
T KOG4283|consen 251 GLAWTSDARYLASCGTDDRIRVWNMESGRNTLREFGPIIHNQTTSFAVHIQ-SMDSDVFVLFPNDGSLALLNLLEGSFVR 329 (397)
T ss_pred eeeecccchhhhhccCccceEEeecccCcccccccccccccccccceEEEe-ecccceEEEEecCCeEEEEEccCceEEE
Confidence 99999999999999999999999998775322111 00 1111122 3344445544556999999999999999
Q ss_pred EEecCCCCeeeEEECCCCCEEEEEeCCCeEEEEEc
Q 003579 552 KFEGHTDRITDFCFSEDGKWLLSSGMDGSLRIWDV 586 (809)
Q Consensus 552 ~~~~h~~~I~~l~fspdg~~l~s~s~D~~I~vwd~ 586 (809)
.+.+|-..|.+.++.|+-+...+++.|+.|..|-.
T Consensus 330 ~l~~h~k~i~c~~~~~~fq~~~tg~~d~ni~~w~p 364 (397)
T KOG4283|consen 330 RLSTHLKRINCAAYRPDFEQCFTGDMNGNIYMWSP 364 (397)
T ss_pred eeecccceeeEEeecCchhhhhccccCCccccccc
Confidence 99999999999999999999999999999999975
No 136
>KOG0264 consensus Nucleosome remodeling factor, subunit CAF1/NURF55/MSI1 [Chromatin structure and dynamics]
Probab=99.92 E-value=2.3e-23 Score=205.12 Aligned_cols=253 Identities=18% Similarity=0.342 Sum_probs=202.5
Q ss_pred EccccccEEEEEE---eCCEEEEEeCCCcEEEEEcCCCcccc------ceeeeEEcCCccccEEEEeCCCCCCEEEEEeC
Q 003579 89 WSRHSAKVNLLLL---FGEHILSIDIDGNMFIWAFKGIEENL------APVGHVKLDDKFTPTCIMHPDTYLNKVIVGSQ 159 (809)
Q Consensus 89 ~~~h~~~V~~l~~---~g~~l~s~~~dg~i~vWd~~~~~~~~------~~~~~~~~~~~~~~~~~~~p~~~~~~l~~~~~ 159 (809)
...|.+.|..+.. +...+++.+..+.|.|||........ .|-..+..|.+....+.+++... ..+++++.
T Consensus 120 ~i~h~gEVnRaRymPQnp~iVAt~t~~~dv~Vfd~tk~~s~~~~~~~~~Pdl~L~gH~~eg~glsWn~~~~-g~Lls~~~ 198 (422)
T KOG0264|consen 120 KINHDGEVNRARYMPQNPNIVATKTSSGDVYVFDYTKHPSKPKASGECRPDLRLKGHEKEGYGLSWNRQQE-GTLLSGSD 198 (422)
T ss_pred eccCCccchhhhhCCCCCcEEEecCCCCCEEEEEeccCCCcccccccCCCceEEEeecccccccccccccc-eeEeeccC
Confidence 3457788877764 35667777888999999997754322 22335666666445666776553 57999999
Q ss_pred CCeEEEEeCCCCc-------eEEEEcCCCCCEEEEEEcCC-CCEEEEEeCCCeEEEEEeeC--CeEEEEEeccCCCcEEE
Q 003579 160 EGSLQLWNISTKK-------KLYEFKGWGSSISSCVSSPA-LDVVAVGCSDGKIHVHNVRY--DEELVTFTHSMRGAVTA 229 (809)
Q Consensus 160 dg~i~lwd~~~~~-------~~~~~~~~~~~I~~l~~sp~-~~~la~g~~dg~i~iwd~~~--~~~~~~~~~~~~~~V~~ 229 (809)
|++|++||+.... +...+.+|...|..++|+|- .+++++.+.|+.+.|||+++ .+....... |.++|.|
T Consensus 199 d~~i~lwdi~~~~~~~~~~~p~~~~~~h~~~VeDV~~h~~h~~lF~sv~dd~~L~iwD~R~~~~~~~~~~~a-h~~~vn~ 277 (422)
T KOG0264|consen 199 DHTICLWDINAESKEDKVVDPKTIFSGHEDVVEDVAWHPLHEDLFGSVGDDGKLMIWDTRSNTSKPSHSVKA-HSAEVNC 277 (422)
T ss_pred CCcEEEEeccccccCCccccceEEeecCCcceehhhccccchhhheeecCCCeEEEEEcCCCCCCCcccccc-cCCceeE
Confidence 9999999996432 35668999999999999994 56889999999999999995 344444444 4899999
Q ss_pred EEEecCCCCEEEEEcCCCcEEEEECCCc-eeeeeeecccccceEEEEEecCC-CEEEEEcCCCcEEEEEeeCC-------
Q 003579 230 LAFSSDGQPLLASGASSGVISIWNLEKR-RLQSVIREAHDNAIISLHFFANE-PVLMSASADNSIKMWIFDTT------- 300 (809)
Q Consensus 230 l~fs~dg~~~lasg~~dg~I~iwdl~~~-~~~~~~~~~h~~~V~~l~~~~~~-~~l~s~s~d~~i~vw~~~~~------- 300 (809)
++|+|-+.++||+|+.|++|++||+++- +.+.++. +|...|..+.|+|.. ..|++++.|+.+.+||+..-
T Consensus 278 ~~fnp~~~~ilAT~S~D~tV~LwDlRnL~~~lh~~e-~H~dev~~V~WSPh~etvLASSg~D~rl~vWDls~ig~eq~~e 356 (422)
T KOG0264|consen 278 VAFNPFNEFILATGSADKTVALWDLRNLNKPLHTFE-GHEDEVFQVEWSPHNETVLASSGTDRRLNVWDLSRIGEEQSPE 356 (422)
T ss_pred EEeCCCCCceEEeccCCCcEEEeechhcccCceecc-CCCcceEEEEeCCCCCceeEecccCCcEEEEeccccccccChh
Confidence 9999999889999999999999999986 4566666 999999999999965 58999999999999998653
Q ss_pred ---CCCceeEEeccCCCCCCeeEEEecCC-CEEEEEECCCCEEEEEee
Q 003579 301 ---DGDPRLLRFRSGHSAPPLCIRFYANG-RHILSAGQDRAFRLFSVI 344 (809)
Q Consensus 301 ---~~~~~~~~~~~~h~~~v~~i~~~~~~-~~l~s~~~dg~i~~wd~~ 344 (809)
.+.+.++..-.||...|..+.|+|.. -.++|.+.|+.+.+|...
T Consensus 357 da~dgppEllF~HgGH~~kV~DfsWnp~ePW~I~SvaeDN~LqIW~~s 404 (422)
T KOG0264|consen 357 DAEDGPPELLFIHGGHTAKVSDFSWNPNEPWTIASVAEDNILQIWQMA 404 (422)
T ss_pred hhccCCcceeEEecCcccccccccCCCCCCeEEEEecCCceEEEeecc
Confidence 34466778888999999999999955 467788999999999875
No 137
>KOG1332 consensus Vesicle coat complex COPII, subunit SEC13 [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.92 E-value=1.6e-23 Score=188.92 Aligned_cols=256 Identities=16% Similarity=0.260 Sum_probs=208.0
Q ss_pred EccccccEEEEEE--eCCEEEEEeCCCcEEEEEcCCCccccceeeeEEcCCccccEEEEeCCCCCCEEEEEeCCCeEEEE
Q 003579 89 WSRHSAKVNLLLL--FGEHILSIDIDGNMFIWAFKGIEENLAPVGHVKLDDKFTPTCIMHPDTYLNKVIVGSQEGSLQLW 166 (809)
Q Consensus 89 ~~~h~~~V~~l~~--~g~~l~s~~~dg~i~vWd~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~l~~~~~dg~i~lw 166 (809)
-..|.+.|+.+.. .|++|++|+.|++|+|+.+..... ..++.++..|.+.+..+++.-+.|-+.|++++.||.|.||
T Consensus 7 dt~H~D~IHda~lDyygkrlATcsSD~tVkIf~v~~n~~-s~ll~~L~Gh~GPVwqv~wahPk~G~iLAScsYDgkVIiW 85 (299)
T KOG1332|consen 7 DTQHEDMIHDAQLDYYGKRLATCSSDGTVKIFEVRNNGQ-SKLLAELTGHSGPVWKVAWAHPKFGTILASCSYDGKVIIW 85 (299)
T ss_pred hhhhhhhhhHhhhhhhcceeeeecCCccEEEEEEcCCCC-ceeeeEecCCCCCeeEEeecccccCcEeeEeecCceEEEE
Confidence 4678888987764 699999999999999999987654 3347888999999999998776677999999999999999
Q ss_pred eCCCCc--eEEEEcCCCCCEEEEEEcCC--CCEEEEEeCCCeEEEEEeeCC--eEEEEEeccCCCcEEEEEEecC---CC
Q 003579 167 NISTKK--KLYEFKGWGSSISSCVSSPA--LDVVAVGCSDGKIHVHNVRYD--EELVTFTHSMRGAVTALAFSSD---GQ 237 (809)
Q Consensus 167 d~~~~~--~~~~~~~~~~~I~~l~~sp~--~~~la~g~~dg~i~iwd~~~~--~~~~~~~~~~~~~V~~l~fs~d---g~ 237 (809)
.-.+|+ ..+.+..|...|++++|.|. |-.||+|+.||.|.|.+.+.. -....+...|.-.|++++|.|- |.
T Consensus 86 ke~~g~w~k~~e~~~h~~SVNsV~wapheygl~LacasSDG~vsvl~~~~~g~w~t~ki~~aH~~GvnsVswapa~~~g~ 165 (299)
T KOG1332|consen 86 KEENGRWTKAYEHAAHSASVNSVAWAPHEYGLLLACASSDGKVSVLTYDSSGGWTTSKIVFAHEIGVNSVSWAPASAPGS 165 (299)
T ss_pred ecCCCchhhhhhhhhhcccceeecccccccceEEEEeeCCCcEEEEEEcCCCCccchhhhhccccccceeeecCcCCCcc
Confidence 987773 45667889999999999996 568999999999999998865 2333444445778999999986 31
Q ss_pred ----------CEEEEEcCCCcEEEEECCCc--eeeeeeecccccceEEEEEecCC----CEEEEEcCCCcEEEEEeeCCC
Q 003579 238 ----------PLLASGASSGVISIWNLEKR--RLQSVIREAHDNAIISLHFFANE----PVLMSASADNSIKMWIFDTTD 301 (809)
Q Consensus 238 ----------~~lasg~~dg~I~iwdl~~~--~~~~~~~~~h~~~V~~l~~~~~~----~~l~s~s~d~~i~vw~~~~~~ 301 (809)
..|++|+.|..|+||+..++ +...++. +|.+.|+.++|.|.- ..|++++.||++.||..+...
T Consensus 166 ~~~~~~~~~~krlvSgGcDn~VkiW~~~~~~w~~e~~l~-~H~dwVRDVAwaP~~gl~~s~iAS~SqDg~viIwt~~~e~ 244 (299)
T KOG1332|consen 166 LVDQGPAAKVKRLVSGGCDNLVKIWKFDSDSWKLERTLE-GHKDWVRDVAWAPSVGLPKSTIASCSQDGTVIIWTKDEEY 244 (299)
T ss_pred ccccCcccccceeeccCCccceeeeecCCcchhhhhhhh-hcchhhhhhhhccccCCCceeeEEecCCCcEEEEEecCcc
Confidence 25999999999999999886 3344465 999999999999964 389999999999999877332
Q ss_pred CCceeEEeccCCCCCCeeEEEecCCCEEEEEECCCCEEEEEeeecc
Q 003579 302 GDPRLLRFRSGHSAPPLCIRFYANGRHILSAGQDRAFRLFSVIQDQ 347 (809)
Q Consensus 302 ~~~~~~~~~~~h~~~v~~i~~~~~~~~l~s~~~dg~i~~wd~~~~~ 347 (809)
+. -....+......+..+.|+..|+.|+.++.|+.+.+|.-....
T Consensus 245 e~-wk~tll~~f~~~~w~vSWS~sGn~LaVs~GdNkvtlwke~~~G 289 (299)
T KOG1332|consen 245 EP-WKKTLLEEFPDVVWRVSWSLSGNILAVSGGDNKVTLWKENVDG 289 (299)
T ss_pred Cc-ccccccccCCcceEEEEEeccccEEEEecCCcEEEEEEeCCCC
Confidence 22 2333344566789999999999999999999999999765443
No 138
>KOG2055 consensus WD40 repeat protein [General function prediction only]
Probab=99.92 E-value=9.3e-23 Score=200.30 Aligned_cols=290 Identities=17% Similarity=0.281 Sum_probs=233.1
Q ss_pred ccccEEEEEEe--CCEEEEEeCCCcEEEEEcCCCccccceeeeEEcCCccccEEEEeCCCCCCEEEEEeCCCeEEEEeCC
Q 003579 92 HSAKVNLLLLF--GEHILSIDIDGNMFIWAFKGIEENLAPVGHVKLDDKFTPTCIMHPDTYLNKVIVGSQEGSLQLWNIS 169 (809)
Q Consensus 92 h~~~V~~l~~~--g~~l~s~~~dg~i~vWd~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~l~~~~~dg~i~lwd~~ 169 (809)
-.++|++|.|. ...|++++.||++++|.++...-. .+..+.+..-.+.++.|+|.+. ..+++++....++.||+.
T Consensus 212 s~~~I~sv~FHp~~plllvaG~d~~lrifqvDGk~N~--~lqS~~l~~fPi~~a~f~p~G~-~~i~~s~rrky~ysyDle 288 (514)
T KOG2055|consen 212 SHGGITSVQFHPTAPLLLVAGLDGTLRIFQVDGKVNP--KLQSIHLEKFPIQKAEFAPNGH-SVIFTSGRRKYLYSYDLE 288 (514)
T ss_pred CcCCceEEEecCCCceEEEecCCCcEEEEEecCccCh--hheeeeeccCccceeeecCCCc-eEEEecccceEEEEeecc
Confidence 35689999984 678999999999999999875442 3666777777788899999993 389999999999999999
Q ss_pred CCceEEE--EcCC-CCCEEEEEEcCCCCEEEEEeCCCeEEEEEeeCCeEEEEEeccCCCcEEEEEEecCCCCEEEEEcCC
Q 003579 170 TKKKLYE--FKGW-GSSISSCVSSPALDVVAVGCSDGKIHVHNVRYDEELVTFTHSMRGAVTALAFSSDGQPLLASGASS 246 (809)
Q Consensus 170 ~~~~~~~--~~~~-~~~I~~l~~sp~~~~la~g~~dg~i~iwd~~~~~~~~~~~~~~~~~V~~l~fs~dg~~~lasg~~d 246 (809)
+.+.... ..++ ...+...+.||++++||..+..|.|.+....+++.+.+++. .+.|..++|+.||+ .|++.+.+
T Consensus 289 ~ak~~k~~~~~g~e~~~~e~FeVShd~~fia~~G~~G~I~lLhakT~eli~s~Ki--eG~v~~~~fsSdsk-~l~~~~~~ 365 (514)
T KOG2055|consen 289 TAKVTKLKPPYGVEEKSMERFEVSHDSNFIAIAGNNGHIHLLHAKTKELITSFKI--EGVVSDFTFSSDSK-ELLASGGT 365 (514)
T ss_pred ccccccccCCCCcccchhheeEecCCCCeEEEcccCceEEeehhhhhhhhheeee--ccEEeeEEEecCCc-EEEEEcCC
Confidence 8876543 3333 34677889999999999999999999999999999999988 58999999999998 56666668
Q ss_pred CcEEEEECCCceeeeeeecccccce--EEEEEecCCCEEEEEcCCCcEEEEEeeCC--CCCceeEEeccCCCCCCeeEEE
Q 003579 247 GVISIWNLEKRRLQSVIREAHDNAI--ISLHFFANEPVLMSASADNSIKMWIFDTT--DGDPRLLRFRSGHSAPPLCIRF 322 (809)
Q Consensus 247 g~I~iwdl~~~~~~~~~~~~h~~~V--~~l~~~~~~~~l~s~s~d~~i~vw~~~~~--~~~~~~~~~~~~h~~~v~~i~~ 322 (809)
|.|.+||++...+++.+. ..+.| ++++.++++.+|++|+..|.|.||+.+.. ...++++..+..-...|+++.|
T Consensus 366 GeV~v~nl~~~~~~~rf~--D~G~v~gts~~~S~ng~ylA~GS~~GiVNIYd~~s~~~s~~PkPik~~dNLtt~Itsl~F 443 (514)
T KOG2055|consen 366 GEVYVWNLRQNSCLHRFV--DDGSVHGTSLCISLNGSYLATGSDSGIVNIYDGNSCFASTNPKPIKTVDNLTTAITSLQF 443 (514)
T ss_pred ceEEEEecCCcceEEEEe--ecCccceeeeeecCCCceEEeccCcceEEEeccchhhccCCCCchhhhhhhheeeeeeee
Confidence 999999999999888887 33444 56677789999999999999999986543 3456777777778889999999
Q ss_pred ecCCCEEEEEEC--CCCEEEEEeeecccceecchhhHHHHHhhccchhhhhccCceeEEeeccccccccceeEEeecCCc
Q 003579 323 YANGRHILSAGQ--DRAFRLFSVIQDQQSRELSQRHVAKRARKLKMKEEELKLKPVIAFDCAEIRERDWCNVVTCHMDTA 400 (809)
Q Consensus 323 ~~~~~~l~s~~~--dg~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~ 400 (809)
++|++.|+.++. +..+++-.+.+...-..
T Consensus 444 n~d~qiLAiaS~~~knalrLVHvPS~TVFsN------------------------------------------------- 474 (514)
T KOG2055|consen 444 NHDAQILAIASRVKKNALRLVHVPSCTVFSN------------------------------------------------- 474 (514)
T ss_pred CcchhhhhhhhhccccceEEEeccceeeecc-------------------------------------------------
Confidence 999999988774 56777776543321111
Q ss_pred eEEEEEeeeeeecceeeecCCCCCCCeEEEEEcCCCCEEEEEeCCCcEEEEECC
Q 003579 401 QAYVWRLQNFVLGEHILRPCPENPTAVKACTISACGNFAVLGTAGGWIERFNLQ 454 (809)
Q Consensus 401 ~~~~w~~~~~~~~~~~~~~~~~~~~~v~~v~~s~~g~~l~~g~~~g~i~i~~~~ 454 (809)
+++....-+.++|++|||.|.++++|...|.+.+|.+.
T Consensus 475 ----------------fP~~n~~vg~vtc~aFSP~sG~lAvGNe~grv~l~kL~ 512 (514)
T KOG2055|consen 475 ----------------FPTSNTKVGHVTCMAFSPNSGYLAVGNEAGRVHLFKLH 512 (514)
T ss_pred ----------------CCCCCCcccceEEEEecCCCceEEeecCCCceeeEeec
Confidence 11112233889999999999999999999999999864
No 139
>KOG1273 consensus WD40 repeat protein [General function prediction only]
Probab=99.91 E-value=7.3e-23 Score=191.32 Aligned_cols=282 Identities=16% Similarity=0.274 Sum_probs=217.7
Q ss_pred EEEEEEcCCCCEEEEEeCCCeEEEEEeeCCeEEEEEeccCCCcEEEEEEecCCCCEEEEEcCCCcEEEEECCCceeeeee
Q 003579 184 ISSCVSSPALDVVAVGCSDGKIHVHNVRYDEELVTFTHSMRGAVTALAFSSDGQPLLASGASSGVISIWNLEKRRLQSVI 263 (809)
Q Consensus 184 I~~l~~sp~~~~la~g~~dg~i~iwd~~~~~~~~~~~~~~~~~V~~l~fs~dg~~~lasg~~dg~I~iwdl~~~~~~~~~ 263 (809)
-.|+.|++.|.+||+|+.||.|.|||+.+...-+.+..| ..+|++++||+||+ .|++++.|..|.+||+..|.+++.+
T Consensus 26 a~~~~Fs~~G~~lAvGc~nG~vvI~D~~T~~iar~lsaH-~~pi~sl~WS~dgr-~LltsS~D~si~lwDl~~gs~l~ri 103 (405)
T KOG1273|consen 26 AECCQFSRWGDYLAVGCANGRVVIYDFDTFRIARMLSAH-VRPITSLCWSRDGR-KLLTSSRDWSIKLWDLLKGSPLKRI 103 (405)
T ss_pred cceEEeccCcceeeeeccCCcEEEEEccccchhhhhhcc-ccceeEEEecCCCC-EeeeecCCceeEEEeccCCCceeEE
Confidence 689999999999999999999999999998876666665 88999999999999 8999999999999999999999998
Q ss_pred ecccccceEEEEEecCCCEEEEEc-CCCcEEEEEeeCCCCCceeEEeccCCCCCCeeEEEecCCCEEEEEECCCCEEEEE
Q 003579 264 REAHDNAIISLHFFANEPVLMSAS-ADNSIKMWIFDTTDGDPRLLRFRSGHSAPPLCIRFYANGRHILSAGQDRAFRLFS 342 (809)
Q Consensus 264 ~~~h~~~V~~l~~~~~~~~l~s~s-~d~~i~vw~~~~~~~~~~~~~~~~~h~~~v~~i~~~~~~~~l~s~~~dg~i~~wd 342 (809)
+ ..++|+.+.|+|.....+.++ .+.+ ..-+.|++.-..++.-..|+.+.
T Consensus 104 r--f~spv~~~q~hp~k~n~~va~~~~~s-------------------------p~vi~~s~~~h~~Lp~d~d~dln--- 153 (405)
T KOG1273|consen 104 R--FDSPVWGAQWHPRKRNKCVATIMEES-------------------------PVVIDFSDPKHSVLPKDDDGDLN--- 153 (405)
T ss_pred E--ccCccceeeeccccCCeEEEEEecCC-------------------------cEEEEecCCceeeccCCCccccc---
Confidence 7 788999999999654333222 1111 12223332112222223333211
Q ss_pred eeecccceecchhhHHHHHhhccchhhhhccCceeEEeeccccccccceeEEeecCCceEEEEEeeeeeecceeeecCCC
Q 003579 343 VIQDQQSRELSQRHVAKRARKLKMKEEELKLKPVIAFDCAEIRERDWCNVVTCHMDTAQAYVWRLQNFVLGEHILRPCPE 422 (809)
Q Consensus 343 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~ 422 (809)
T Consensus 154 -------------------------------------------------------------------------------- 153 (405)
T KOG1273|consen 154 -------------------------------------------------------------------------------- 153 (405)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred CCCCeEEEEEcCCCCEEEEEeCCCcEEEEECCCCceeeeeeCcccccccCccccEEEEEEcCCCCEEEEEeCcCeEEEEE
Q 003579 423 NPTAVKACTISACGNFAVLGTAGGWIERFNLQSGISRGSYLDMSERSNYAHNGEVVGVACDSTNTLMISAGYHGDIKVWD 502 (809)
Q Consensus 423 ~~~~v~~v~~s~~g~~l~~g~~~g~i~i~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~l~s~~~dg~i~iwd 502 (809)
....+..+.+.|+++++|++.|.+.+|+..+-+.+..+.. .....|..+.++..|+.++.-+.|..||.|+
T Consensus 154 --~sas~~~fdr~g~yIitGtsKGkllv~~a~t~e~vas~ri-------ts~~~IK~I~~s~~g~~liiNtsDRvIR~ye 224 (405)
T KOG1273|consen 154 --SSASHGVFDRRGKYIITGTSKGKLLVYDAETLECVASFRI-------TSVQAIKQIIVSRKGRFLIINTSDRVIRTYE 224 (405)
T ss_pred --cccccccccCCCCEEEEecCcceEEEEecchheeeeeeee-------chheeeeEEEEeccCcEEEEecCCceEEEEe
Confidence 1122235778899999999999999999999988888762 2247889999999999999999999999999
Q ss_pred CCCC-------cee--eeee---cCCCeEEEEEeeCCCEEEEEeC-CCeEEEEEcCCCeEEEEEecCC-CCeeeEEECCC
Q 003579 503 FKGR-------DLK--SRWE---VGCSLVKIVYHRVNGLLATVAD-DLVIRLFDVVALRMVRKFEGHT-DRITDFCFSED 568 (809)
Q Consensus 503 ~~~~-------~~~--~~~~---~~~~i~~~~~s~~~~~la~~~~-d~~I~v~d~~~~~~~~~~~~h~-~~I~~l~fspd 568 (809)
++.- ++. +.++ ....=.+++|+.+|.|+++++. -..++||.-..|.+++.+.|.. ....++.|+|-
T Consensus 225 ~~di~~~~r~~e~e~~~K~qDvVNk~~Wk~ccfs~dgeYv~a~s~~aHaLYIWE~~~GsLVKILhG~kgE~l~DV~whp~ 304 (405)
T KOG1273|consen 225 ISDIDDEGRDGEVEPEHKLQDVVNKLQWKKCCFSGDGEYVCAGSARAHALYIWEKSIGSLVKILHGTKGEELLDVNWHPV 304 (405)
T ss_pred hhhhcccCccCCcChhHHHHHHHhhhhhhheeecCCccEEEeccccceeEEEEecCCcceeeeecCCchhheeecccccc
Confidence 7621 111 1111 1134457899999999988864 4689999999999999999988 66889999999
Q ss_pred CCEEEEEeCCCeEEEEEcC
Q 003579 569 GKWLLSSGMDGSLRIWDVI 587 (809)
Q Consensus 569 g~~l~s~s~D~~I~vwd~~ 587 (809)
...+++- ..|.|++|...
T Consensus 305 rp~i~si-~sg~v~iw~~~ 322 (405)
T KOG1273|consen 305 RPIIASI-ASGVVYIWAVV 322 (405)
T ss_pred eeeeeec-cCCceEEEEee
Confidence 8888877 57899999854
No 140
>KOG4283 consensus Transcription-coupled repair protein CSA, contains WD40 domain [Transcription; Replication, recombination and repair]
Probab=99.91 E-value=1.2e-22 Score=188.04 Aligned_cols=308 Identities=18% Similarity=0.272 Sum_probs=232.2
Q ss_pred EccccccEEEEEEe---CCEEEEEeCCCcEEEEEcCCCccccceeeeEEcCCccccEEEEeCCCCCCEEEEEeCCCeEEE
Q 003579 89 WSRHSAKVNLLLLF---GEHILSIDIDGNMFIWAFKGIEENLAPVGHVKLDDKFTPTCIMHPDTYLNKVIVGSQEGSLQL 165 (809)
Q Consensus 89 ~~~h~~~V~~l~~~---g~~l~s~~~dg~i~vWd~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~l~~~~~dg~i~l 165 (809)
...|.+.|.++..+ |.++++|+.||.|.|||++..... .. ... ++ ..+++
T Consensus 39 ~r~HgGsvNsL~id~tegrymlSGgadgsi~v~Dl~n~t~~----e~----s~l--------------i~-----k~~c~ 91 (397)
T KOG4283|consen 39 VRPHGGSVNSLQIDLTEGRYMLSGGADGSIAVFDLQNATDY----EA----SGL--------------IA-----KHKCI 91 (397)
T ss_pred eccCCCccceeeeccccceEEeecCCCccEEEEEeccccch----hh----ccc--------------ee-----heeee
Confidence 35788999999974 999999999999999999775431 10 000 00 01111
Q ss_pred EeCCCCceEEEEcCCCCCEEEEEEcC-CCCEEEEEeCCCeEEEEEeeCCeEEEEEeccCCCcEEEEEEecCC--CCEEEE
Q 003579 166 WNISTKKKLYEFKGWGSSISSCVSSP-ALDVVAVGCSDGKIHVHNVRYDEELVTFTHSMRGAVTALAFSSDG--QPLLAS 242 (809)
Q Consensus 166 wd~~~~~~~~~~~~~~~~I~~l~~sp-~~~~la~g~~dg~i~iwd~~~~~~~~~~~~~~~~~V~~l~fs~dg--~~~las 242 (809)
+. ...-.+|.-.|..+.|-| |...+.+++-|.++++||..+-+....|.. ++.|++-+++|-. .-++|+
T Consensus 92 --v~----~~h~~~Hky~iss~~WyP~DtGmFtssSFDhtlKVWDtnTlQ~a~~F~m--e~~VYshamSp~a~sHcLiA~ 163 (397)
T KOG4283|consen 92 --VA----KQHENGHKYAISSAIWYPIDTGMFTSSSFDHTLKVWDTNTLQEAVDFKM--EGKVYSHAMSPMAMSHCLIAA 163 (397)
T ss_pred --cc----ccCCccceeeeeeeEEeeecCceeecccccceEEEeecccceeeEEeec--CceeehhhcChhhhcceEEEE
Confidence 00 011246788899999988 556888889999999999999999999987 5789999998853 347888
Q ss_pred EcCCCcEEEEECCCceeeeeeecccccceEEEEEecCCC-EEEEEcCCCcEEEEEeeCCCCC-----------ceeEEec
Q 003579 243 GASSGVISIWNLEKRRLQSVIREAHDNAIISLHFFANEP-VLMSASADNSIKMWIFDTTDGD-----------PRLLRFR 310 (809)
Q Consensus 243 g~~dg~I~iwdl~~~~~~~~~~~~h~~~V~~l~~~~~~~-~l~s~s~d~~i~vw~~~~~~~~-----------~~~~~~~ 310 (809)
|..+-.|++-|+.+|...+++. +|.+.|.++.|+|... .|++|+.||.|++||+....+- +..++..
T Consensus 164 gtr~~~VrLCDi~SGs~sH~Ls-GHr~~vlaV~Wsp~~e~vLatgsaDg~irlWDiRrasgcf~~lD~hn~k~~p~~~~n 242 (397)
T KOG4283|consen 164 GTRDVQVRLCDIASGSFSHTLS-GHRDGVLAVEWSPSSEWVLATGSADGAIRLWDIRRASGCFRVLDQHNTKRPPILKTN 242 (397)
T ss_pred ecCCCcEEEEeccCCcceeeec-cccCceEEEEeccCceeEEEecCCCceEEEEEeecccceeEEeecccCccCcccccc
Confidence 8899999999999999999999 9999999999999876 6789999999999999766322 2334455
Q ss_pred cCCCCCCeeEEEecCCCEEEEEECCCCEEEEEeeecccceecchhhHHHHHhhccchhhhhccCceeEEeeccccccccc
Q 003579 311 SGHSAPPLCIRFYANGRHILSAGQDRAFRLFSVIQDQQSRELSQRHVAKRARKLKMKEEELKLKPVIAFDCAEIRERDWC 390 (809)
Q Consensus 311 ~~h~~~v~~i~~~~~~~~l~s~~~dg~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~ 390 (809)
..|.+.+..++|..++.++++++.|..+++|+..++.....-.......+.
T Consensus 243 ~ah~gkvngla~tSd~~~l~~~gtd~r~r~wn~~~G~ntl~~~g~~~~n~~----------------------------- 293 (397)
T KOG4283|consen 243 TAHYGKVNGLAWTSDARYLASCGTDDRIRVWNMESGRNTLREFGPIIHNQT----------------------------- 293 (397)
T ss_pred ccccceeeeeeecccchhhhhccCccceEEeecccCccccccccccccccc-----------------------------
Confidence 678999999999999999999999999999998776543221110000000
Q ss_pred eeEEeecCCceEEEEEeeeeeecceeeecCCCCCCCeEEEEEcCCCCEEEEEeCCCcEEEEECCCCceeeeeeCcccccc
Q 003579 391 NVVTCHMDTAQAYVWRLQNFVLGEHILRPCPENPTAVKACTISACGNFAVLGTAGGWIERFNLQSGISRGSYLDMSERSN 470 (809)
Q Consensus 391 ~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~v~~v~~s~~g~~l~~g~~~g~i~i~~~~~~~~~~~~~~~~~~~~ 470 (809)
. .....+. +.|...++.--.++.+.++++-+|..+..+.
T Consensus 294 -------------------------------~--~~~~~~~-~~~s~vfv~~p~~~~lall~~~sgs~ir~l~------- 332 (397)
T KOG4283|consen 294 -------------------------------T--SFAVHIQ-SMDSDVFVLFPNDGSLALLNLLEGSFVRRLS------- 332 (397)
T ss_pred -------------------------------c--cceEEEe-ecccceEEEEecCCeEEEEEccCceEEEeee-------
Confidence 0 0111122 2233333333345889999999999988886
Q ss_pred cCccccEEEEEEcCCCCEEEEEeCcCeEEEEEC
Q 003579 471 YAHNGEVVGVACDSTNTLMISAGYHGDIKVWDF 503 (809)
Q Consensus 471 ~~h~~~v~~l~~~~~~~~l~s~~~dg~i~iwd~ 503 (809)
.|...|.+.++-|+=+...++..|+.+..|-.
T Consensus 333 -~h~k~i~c~~~~~~fq~~~tg~~d~ni~~w~p 364 (397)
T KOG4283|consen 333 -THLKRINCAAYRPDFEQCFTGDMNGNIYMWSP 364 (397)
T ss_pred -cccceeeEEeecCchhhhhccccCCccccccc
Confidence 88899999999999999999999999999975
No 141
>KOG0264 consensus Nucleosome remodeling factor, subunit CAF1/NURF55/MSI1 [Chromatin structure and dynamics]
Probab=99.91 E-value=8.1e-23 Score=201.22 Aligned_cols=249 Identities=20% Similarity=0.352 Sum_probs=201.3
Q ss_pred cCCCcEEEEEEecCCCCEEEEEcCCCcEEEEECCCcee----------eeeeecccccceEEEEEecCCC-EEEEEcCCC
Q 003579 222 SMRGAVTALAFSSDGQPLLASGASSGVISIWNLEKRRL----------QSVIREAHDNAIISLHFFANEP-VLMSASADN 290 (809)
Q Consensus 222 ~~~~~V~~l~fs~dg~~~lasg~~dg~I~iwdl~~~~~----------~~~~~~~h~~~V~~l~~~~~~~-~l~s~s~d~ 290 (809)
.|.+.|+.+.+.|....++|+++..+.|.|||..+..- -..+. +|...-.+++|++... .|++++.|+
T Consensus 122 ~h~gEVnRaRymPQnp~iVAt~t~~~dv~Vfd~tk~~s~~~~~~~~~Pdl~L~-gH~~eg~glsWn~~~~g~Lls~~~d~ 200 (422)
T KOG0264|consen 122 NHDGEVNRARYMPQNPNIVATKTSSGDVYVFDYTKHPSKPKASGECRPDLRLK-GHEKEGYGLSWNRQQEGTLLSGSDDH 200 (422)
T ss_pred cCCccchhhhhCCCCCcEEEecCCCCCEEEEEeccCCCcccccccCCCceEEE-eecccccccccccccceeEeeccCCC
Confidence 45789999999999988999999999999999865421 12555 8988788899998654 899999999
Q ss_pred cEEEEEeeCCCCC---ceeEEeccCCCCCCeeEEEec-CCCEEEEEECCCCEEEEEeeecccceecchhhHHHHHhhccc
Q 003579 291 SIKMWIFDTTDGD---PRLLRFRSGHSAPPLCIRFYA-NGRHILSAGQDRAFRLFSVIQDQQSRELSQRHVAKRARKLKM 366 (809)
Q Consensus 291 ~i~vw~~~~~~~~---~~~~~~~~~h~~~v~~i~~~~-~~~~l~s~~~dg~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~ 366 (809)
.|.+||+...... ......+.+|...|..++|++ +...+.+++.|+.+.+||+++. .....
T Consensus 201 ~i~lwdi~~~~~~~~~~~p~~~~~~h~~~VeDV~~h~~h~~lF~sv~dd~~L~iwD~R~~-~~~~~-------------- 265 (422)
T KOG0264|consen 201 TICLWDINAESKEDKVVDPKTIFSGHEDVVEDVAWHPLHEDLFGSVGDDGKLMIWDTRSN-TSKPS-------------- 265 (422)
T ss_pred cEEEEeccccccCCccccceEEeecCCcceehhhccccchhhheeecCCCeEEEEEcCCC-CCCCc--------------
Confidence 9999999876543 345567789999999999999 6678889999999999998753 11000
Q ss_pred hhhhhccCceeEEeeccccccccceeEEeecCCceEEEEEeeeeeecceeeecCCCCCCCeEEEEEcCCCCEEEEEeCCC
Q 003579 367 KEEELKLKPVIAFDCAEIRERDWCNVVTCHMDTAQAYVWRLQNFVLGEHILRPCPENPTAVKACTISACGNFAVLGTAGG 446 (809)
Q Consensus 367 ~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~v~~v~~s~~g~~l~~g~~~g 446 (809)
T Consensus 266 -------------------------------------------------------------------------------- 265 (422)
T KOG0264|consen 266 -------------------------------------------------------------------------------- 265 (422)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred cEEEEECCCCceeeeeeCcccccccCccccEEEEEEcCCC-CEEEEEeCcCeEEEEECCCC-ceeeeeecC-CCeEEEEE
Q 003579 447 WIERFNLQSGISRGSYLDMSERSNYAHNGEVVGVACDSTN-TLMISAGYHGDIKVWDFKGR-DLKSRWEVG-CSLVKIVY 523 (809)
Q Consensus 447 ~i~i~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~-~~l~s~~~dg~i~iwd~~~~-~~~~~~~~~-~~i~~~~~ 523 (809)
. ...+|.+.|.+++|+|-+ ..||+|+.|++|++||+++- +++.++..+ ..|.++.|
T Consensus 266 -------------~--------~~~ah~~~vn~~~fnp~~~~ilAT~S~D~tV~LwDlRnL~~~lh~~e~H~dev~~V~W 324 (422)
T KOG0264|consen 266 -------------H--------SVKAHSAEVNCVAFNPFNEFILATGSADKTVALWDLRNLNKPLHTFEGHEDEVFQVEW 324 (422)
T ss_pred -------------c--------cccccCCceeEEEeCCCCCceEEeccCCCcEEEeechhcccCceeccCCCcceEEEEe
Confidence 0 013899999999999954 67888999999999999864 345555544 89999999
Q ss_pred eeCC-CEEEEEeCCCeEEEEEcCCC--------------eEEEEEecCCCCeeeEEECCCCCEE-EEEeCCCeEEEEEcC
Q 003579 524 HRVN-GLLATVADDLVIRLFDVVAL--------------RMVRKFEGHTDRITDFCFSEDGKWL-LSSGMDGSLRIWDVI 587 (809)
Q Consensus 524 s~~~-~~la~~~~d~~I~v~d~~~~--------------~~~~~~~~h~~~I~~l~fspdg~~l-~s~s~D~~I~vwd~~ 587 (809)
+|.. ..||+++.|+.+.|||+..- +++..-.||+..|.++.|+|+..|+ +|++.|+.+.||...
T Consensus 325 SPh~etvLASSg~D~rl~vWDls~ig~eq~~eda~dgppEllF~HgGH~~kV~DfsWnp~ePW~I~SvaeDN~LqIW~~s 404 (422)
T KOG0264|consen 325 SPHNETVLASSGTDRRLNVWDLSRIGEEQSPEDAEDGPPELLFIHGGHTAKVSDFSWNPNEPWTIASVAEDNILQIWQMA 404 (422)
T ss_pred CCCCCceeEecccCCcEEEEeccccccccChhhhccCCcceeEEecCcccccccccCCCCCCeEEEEecCCceEEEeecc
Confidence 9965 57888999999999998642 3456667999999999999988875 578899999999875
No 142
>KOG4328 consensus WD40 protein [Function unknown]
Probab=99.91 E-value=2.3e-22 Score=197.41 Aligned_cols=304 Identities=20% Similarity=0.276 Sum_probs=234.3
Q ss_pred EECCCceeeeeeecccccceEEEEEecCCC--EEEEEcCCCcEEEEEeeCCCCCceeEEeccCCCCCCeeEEEec-CCCE
Q 003579 252 WNLEKRRLQSVIREAHDNAIISLHFFANEP--VLMSASADNSIKMWIFDTTDGDPRLLRFRSGHSAPPLCIRFYA-NGRH 328 (809)
Q Consensus 252 wdl~~~~~~~~~~~~h~~~V~~l~~~~~~~--~l~s~s~d~~i~vw~~~~~~~~~~~~~~~~~h~~~v~~i~~~~-~~~~ 328 (809)
+|+..-......+ -+.+.|++++|+|..+ ++++|..-|.|-+||+++......-+..+..|+.+|.++.|+| +...
T Consensus 171 l~l~~~~~~~v~k-v~~~Rit~l~fHPt~~~~lva~GdK~G~VG~Wn~~~~~~d~d~v~~f~~hs~~Vs~l~F~P~n~s~ 249 (498)
T KOG4328|consen 171 LDLDDYRILNVAK-VTDRRITSLAFHPTENRKLVAVGDKGGQVGLWNFGTQEKDKDGVYLFTPHSGPVSGLKFSPANTSQ 249 (498)
T ss_pred cccccceecceeE-ecccceEEEEecccCcceEEEEccCCCcEEEEecCCCCCccCceEEeccCCccccceEecCCChhh
Confidence 4444445555565 6889999999999765 7888888999999999755555555667789999999999999 6678
Q ss_pred EEEEECCCCEEEEEeeecccceecchhhHHHHHhhccchhhhhccCceeEEeeccccccccceeEEeecCCceEEEEEee
Q 003579 329 ILSAGQDRAFRLFSVIQDQQSRELSQRHVAKRARKLKMKEEELKLKPVIAFDCAEIRERDWCNVVTCHMDTAQAYVWRLQ 408 (809)
Q Consensus 329 l~s~~~dg~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~ 408 (809)
+++.+.||+|++-|+........++.
T Consensus 250 i~ssSyDGtiR~~D~~~~i~e~v~s~------------------------------------------------------ 275 (498)
T KOG4328|consen 250 IYSSSYDGTIRLQDFEGNISEEVLSL------------------------------------------------------ 275 (498)
T ss_pred eeeeccCceeeeeeecchhhHHHhhc------------------------------------------------------
Confidence 99999999999999876432211110
Q ss_pred eeeecceeeecCCCCCCCeEEEEEcCCCCEEEEEeCCCcEEEEECCCCceeeeeeCcccccccCccccEEEEEEcCCC-C
Q 003579 409 NFVLGEHILRPCPENPTAVKACTISACGNFAVLGTAGGWIERFNLQSGISRGSYLDMSERSNYAHNGEVVGVACDSTN-T 487 (809)
Q Consensus 409 ~~~~~~~~~~~~~~~~~~v~~v~~s~~g~~l~~g~~~g~i~i~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~-~ 487 (809)
.........+.++.+...++.|..=|...+||++.+....... .-|...|++++++|.. .
T Consensus 276 ------------~~d~~~fs~~d~~~e~~~vl~~~~~G~f~~iD~R~~~s~~~~~-------~lh~kKI~sv~~NP~~p~ 336 (498)
T KOG4328|consen 276 ------------DTDNIWFSSLDFSAESRSVLFGDNVGNFNVIDLRTDGSEYENL-------RLHKKKITSVALNPVCPW 336 (498)
T ss_pred ------------CccceeeeeccccCCCccEEEeecccceEEEEeecCCccchhh-------hhhhcccceeecCCCCch
Confidence 0111456677788888888888888899999998876533222 3788899999999976 6
Q ss_pred EEEEEeCcCeEEEEECCCCc-----eeeeeecCCCeEEEEEeeCCCEEEEEeCCCeEEEEEcC----CCeEEEEEecCCC
Q 003579 488 LMISAGYHGDIKVWDFKGRD-----LKSRWEVGCSLVKIVYHRVNGLLATVADDLVIRLFDVV----ALRMVRKFEGHTD 558 (809)
Q Consensus 488 ~l~s~~~dg~i~iwd~~~~~-----~~~~~~~~~~i~~~~~s~~~~~la~~~~d~~I~v~d~~----~~~~~~~~~~h~~ 558 (809)
+++|++.|++++|||++.-. .+..+.+...|.+..|||.+..|++.+.|..|+|||.. ...+...+. |..
T Consensus 337 ~laT~s~D~T~kIWD~R~l~~K~sp~lst~~HrrsV~sAyFSPs~gtl~TT~~D~~IRv~dss~~sa~~~p~~~I~-Hn~ 415 (498)
T KOG4328|consen 337 FLATASLDQTAKIWDLRQLRGKASPFLSTLPHRRSVNSAYFSPSGGTLLTTCQDNEIRVFDSSCISAKDEPLGTIP-HNN 415 (498)
T ss_pred heeecccCcceeeeehhhhcCCCCcceecccccceeeeeEEcCCCCceEeeccCCceEEeecccccccCCccceee-ccC
Confidence 78999999999999987532 35667778999999999999999999999999999983 333344443 321
Q ss_pred ------CeeeEEECCCCCEEEEEeCCCeEEEEEcCCccEEEEeeeCcc--eEE-EEEcCCCCeEEEEEeCCCeEEEeecC
Q 003579 559 ------RITDFCFSEDGKWLLSSGMDGSLRIWDVILARQIDAIHVDVS--ITA-LSLSPNMDVLATAHVDQNGVYLWVNR 629 (809)
Q Consensus 559 ------~I~~l~fspdg~~l~s~s~D~~I~vwd~~~~~~i~~~~~~~~--v~~-l~~spdg~~lat~~~d~~~i~lW~~~ 629 (809)
......|.||..++++|-.-..|-|+|-..++.+..+..+.. |.+ ..|+|-+..+++|+..++-|+||.++
T Consensus 416 ~t~RwlT~fKA~W~P~~~li~vg~~~r~IDv~~~~~~q~v~el~~P~~~tI~~vn~~HP~~~~~~aG~~s~Gki~vft~k 495 (498)
T KOG4328|consen 416 RTGRWLTPFKAAWDPDYNLIVVGRYPRPIDVFDGNGGQMVCELHDPESSTIPSVNEFHPMRDTLAAGGNSSGKIYVFTNK 495 (498)
T ss_pred cccccccchhheeCCCccEEEEeccCcceeEEcCCCCEEeeeccCccccccccceeecccccceeccCCccceEEEEecC
Confidence 133568999999999999999999999998888887765443 444 58999999777777766679999876
Q ss_pred c
Q 003579 630 C 630 (809)
Q Consensus 630 ~ 630 (809)
.
T Consensus 496 ~ 496 (498)
T KOG4328|consen 496 K 496 (498)
T ss_pred C
Confidence 3
No 143
>KOG1963 consensus WD40 repeat protein [General function prediction only]
Probab=99.91 E-value=2.8e-20 Score=197.86 Aligned_cols=449 Identities=16% Similarity=0.226 Sum_probs=310.8
Q ss_pred EeCCEEEEEeCCCcEEEEEcCCCccccceeeeEEcCCccccEEEEeCCCCC-CEEEEEeCCCeEEEEeCCCCceEEEEcC
Q 003579 101 LFGEHILSIDIDGNMFIWAFKGIEENLAPVGHVKLDDKFTPTCIMHPDTYL-NKVIVGSQEGSLQLWNISTKKKLYEFKG 179 (809)
Q Consensus 101 ~~g~~l~s~~~dg~i~vWd~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~-~~l~~~~~dg~i~lwd~~~~~~~~~~~~ 179 (809)
.|+++++.+. +..|.|+...++++ ++.+..+........+.|.... .++++++.+|.|++||...++++.++..
T Consensus 26 nD~k~l~~~~-~~~V~VyS~~Tg~~----i~~l~~~~a~l~s~~~~~~~~~~~~~~~~sl~G~I~vwd~~~~~Llkt~~~ 100 (792)
T KOG1963|consen 26 NDAKFLFLCT-GNFVKVYSTATGEC----ITSLEDHTAPLTSVIVLPSSENANYLIVCSLDGTIRVWDWSDGELLKTFDN 100 (792)
T ss_pred cCCcEEEEee-CCEEEEEecchHhh----hhhcccccCccceeeecCCCccceEEEEEecCccEEEecCCCcEEEEEEec
Confidence 3677887776 78899999999999 6677777777788888777643 5788999999999999999999999876
Q ss_pred CCCCEEEEEEcCC---CCEEE-EEeCCCeE-EEEEeeCCeEEEEEe------------ccCCCcEEEEEEecCCCCEEEE
Q 003579 180 WGSSISSCVSSPA---LDVVA-VGCSDGKI-HVHNVRYDEELVTFT------------HSMRGAVTALAFSSDGQPLLAS 242 (809)
Q Consensus 180 ~~~~I~~l~~sp~---~~~la-~g~~dg~i-~iwd~~~~~~~~~~~------------~~~~~~V~~l~fs~dg~~~las 242 (809)
+ .++.++.+.|. ....+ .+..|..+ .....+..+....+. ..+. .-.++.+++.|. +.+.
T Consensus 101 ~-~~v~~~~~~~~~a~~s~~~~~s~~~~~~~~~~s~~~~~q~~~~~~~t~~~~~~d~~~~~~-~~~~I~~~~~ge-~~~i 177 (792)
T KOG1963|consen 101 N-LPVHALVYKPAQADISANVYVSVEDYSILTTFSKKLSKQSSRFVLATFDSAKGDFLKEHQ-EPKSIVDNNSGE-FKGI 177 (792)
T ss_pred C-CceeEEEechhHhCccceeEeecccceeeeecccccccceeeeEeeeccccchhhhhhhc-CCccEEEcCCce-EEEE
Confidence 3 44555554331 11222 22222111 111111111111111 1111 146788888887 3333
Q ss_pred EcCCCcEEEEECCCcee---eeeeecccccceEEEEEecCCCEEEEEcCCCcEEEEEeeCCCCCceeEEeccCCCCCCee
Q 003579 243 GASSGVISIWNLEKRRL---QSVIREAHDNAIISLHFFANEPVLMSASADNSIKMWIFDTTDGDPRLLRFRSGHSAPPLC 319 (809)
Q Consensus 243 g~~dg~I~iwdl~~~~~---~~~~~~~h~~~V~~l~~~~~~~~l~s~s~d~~i~vw~~~~~~~~~~~~~~~~~h~~~v~~ 319 (809)
..+..+.+|+..++.. .......|.-.+++.+++|++++++++..||.|.+|.--..+........+.-|..+|++
T Consensus 178 -~~~~~~~~~~v~~~~~~~~~~~~~~~Htf~~t~~~~spn~~~~Aa~d~dGrI~vw~d~~~~~~~~t~t~lHWH~~~V~~ 256 (792)
T KOG1963|consen 178 -VHMCKIHIYFVPKHTKHTSSRDITVHHTFNITCVALSPNERYLAAGDSDGRILVWRDFGSSDDSETCTLLHWHHDEVNS 256 (792)
T ss_pred -EEeeeEEEEEecccceeeccchhhhhhcccceeEEeccccceEEEeccCCcEEEEeccccccccccceEEEecccccce
Confidence 3456788998887541 111223577778999999999999999999999999533312333344556689999999
Q ss_pred EEEecCCCEEEEEECCCCEEEEEeeecccceecchhhHHHHHhhccchhhhhccCceeEEeeccccccccceeEEeecCC
Q 003579 320 IRFYANGRHILSAGQDRAFRLFSVIQDQQSRELSQRHVAKRARKLKMKEEELKLKPVIAFDCAEIRERDWCNVVTCHMDT 399 (809)
Q Consensus 320 i~~~~~~~~l~s~~~dg~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~ 399 (809)
+.|+++|.+|++||..+.+.+|.+.++++ +-++
T Consensus 257 L~fS~~G~~LlSGG~E~VLv~Wq~~T~~k-qfLP---------------------------------------------- 289 (792)
T KOG1963|consen 257 LSFSSDGAYLLSGGREGVLVLWQLETGKK-QFLP---------------------------------------------- 289 (792)
T ss_pred eEEecCCceEeecccceEEEEEeecCCCc-cccc----------------------------------------------
Confidence 99999999999999999999999987762 1111
Q ss_pred ceEEEEEeeeeeecceeeecCCCCCCCeEEEEEcCCCCEEEEEeCCCcEEEEECCCCceeeeeeCcccc---cccCcccc
Q 003579 400 AQAYVWRLQNFVLGEHILRPCPENPTAVKACTISACGNFAVLGTAGGWIERFNLQSGISRGSYLDMSER---SNYAHNGE 476 (809)
Q Consensus 400 ~~~~~w~~~~~~~~~~~~~~~~~~~~~v~~v~~s~~g~~l~~g~~~g~i~i~~~~~~~~~~~~~~~~~~---~~~~h~~~ 476 (809)
.-.++|..+.+|||++..++...|+.|.+..+.+............. ......+-
T Consensus 290 ----------------------RLgs~I~~i~vS~ds~~~sl~~~DNqI~li~~~dl~~k~tIsgi~~~~~~~k~~~~~l 347 (792)
T KOG1963|consen 290 ----------------------RLGSPILHIVVSPDSDLYSLVLEDNQIHLIKASDLEIKSTISGIKPPTPSTKTRPQSL 347 (792)
T ss_pred ----------------------ccCCeeEEEEEcCCCCeEEEEecCceEEEEeccchhhhhhccCccCCCcccccccccc
Confidence 12278999999999999999999999999998766555444322111 11234556
Q ss_pred EEEEEEcCCCCEEEEEeCcCeEEEEECCCCceeeeeec------------CCCeEEEEEeeCCCEEEEEeC--------C
Q 003579 477 VVGVACDSTNTLMISAGYHGDIKVWDFKGRDLKSRWEV------------GCSLVKIVYHRVNGLLATVAD--------D 536 (809)
Q Consensus 477 v~~l~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~------------~~~i~~~~~s~~~~~la~~~~--------d 536 (809)
.+.++++|.-+.++-.+..|.|.+||+.+.+.+..+.. .-.++.++.+..|.++++.-. |
T Consensus 348 ~t~~~idpr~~~~vln~~~g~vQ~ydl~td~~i~~~~v~~~n~~~~~~n~~v~itav~~~~~gs~maT~E~~~d~~~~~~ 427 (792)
T KOG1963|consen 348 TTGVSIDPRTNSLVLNGHPGHVQFYDLYTDSTIYKLQVCDENYSDGDVNIQVGITAVARSRFGSWMATLEARIDKFNFFD 427 (792)
T ss_pred ceeEEEcCCCCceeecCCCceEEEEeccccceeeeEEEEeecccCCcceeEEeeeeehhhccceEEEEeeeeehhhhccC
Confidence 78999999778888899999999999988877665532 135777788888888888632 2
Q ss_pred --CeEEEEEcCCC----eEEEE-EecCCCCeeeEEECCCC-C-EEEEEeCCCeEEEEEcCCcc----------E--EEEe
Q 003579 537 --LVIRLFDVVAL----RMVRK-FEGHTDRITDFCFSEDG-K-WLLSSGMDGSLRIWDVILAR----------Q--IDAI 595 (809)
Q Consensus 537 --~~I~v~d~~~~----~~~~~-~~~h~~~I~~l~fspdg-~-~l~s~s~D~~I~vwd~~~~~----------~--i~~~ 595 (809)
-.+++|-.... .+... -..|...+...+|.+.. . ..++++.||.++||-+.+.+ | +..+
T Consensus 428 ~e~~LKFW~~n~~~kt~~L~T~I~~PH~~~~vat~~~~~~rs~~~vta~~dg~~KiW~~~~~~n~~k~~s~W~c~~i~sy 507 (792)
T KOG1963|consen 428 GEVSLKFWQYNPNSKTFILNTKINNPHGNAFVATIFLNPTRSVRCVTASVDGDFKIWVFTDDSNIYKKSSNWTCKAIGSY 507 (792)
T ss_pred ceEEEEEEEEcCCcceeEEEEEEecCCCceeEEEEEecCcccceeEEeccCCeEEEEEEecccccCcCccceEEeeeecc
Confidence 35677865433 22222 23588777777765532 2 78999999999999884321 1 1122
Q ss_pred eeCcceEEEEEcCCCCeEEEEEeCCCeEEEeecCc
Q 003579 596 HVDVSITALSLSPNMDVLATAHVDQNGVYLWVNRC 630 (809)
Q Consensus 596 ~~~~~v~~l~~spdg~~lat~~~d~~~i~lW~~~~ 630 (809)
+..++++++||.||..|+.+..| .|.+||...
T Consensus 508 -~k~~i~a~~fs~dGslla~s~~~--~Itiwd~~~ 539 (792)
T KOG1963|consen 508 -HKTPITALCFSQDGSLLAVSFDD--TITIWDYDT 539 (792)
T ss_pred -ccCcccchhhcCCCcEEEEecCC--EEEEecCCC
Confidence 35569999999999777666544 599999765
No 144
>KOG1538 consensus Uncharacterized conserved protein WDR10, contains WD40 repeats [General function prediction only]
Probab=99.91 E-value=6.5e-21 Score=194.67 Aligned_cols=275 Identities=13% Similarity=0.211 Sum_probs=208.8
Q ss_pred cccEEEEeCCCCCCEEEEEeCCCeEEEEeCCCCceEEEEcCCCCCEEEEEEcCCCCEEEEEeCCCeEEEEEeeCCeEEEE
Q 003579 139 FTPTCIMHPDTYLNKVIVGSQEGSLQLWNISTKKKLYEFKGWGSSISSCVSSPALDVVAVGCSDGKIHVHNVRYDEELVT 218 (809)
Q Consensus 139 ~~~~~~~~p~~~~~~l~~~~~dg~i~lwd~~~~~~~~~~~~~~~~I~~l~~sp~~~~la~g~~dg~i~iwd~~~~~~~~~ 218 (809)
.+...+|.|+| ..++.+. +..+.+||.+.|.+++++++|...|.|++|+.+|+++|+|+.|..|.+|+.+- -..
T Consensus 14 ci~d~afkPDG--sqL~lAA-g~rlliyD~ndG~llqtLKgHKDtVycVAys~dGkrFASG~aDK~VI~W~~kl---EG~ 87 (1081)
T KOG1538|consen 14 CINDIAFKPDG--TQLILAA-GSRLLVYDTSDGTLLQPLKGHKDTVYCVAYAKDGKRFASGSADKSVIIWTSKL---EGI 87 (1081)
T ss_pred chheeEECCCC--ceEEEec-CCEEEEEeCCCcccccccccccceEEEEEEccCCceeccCCCceeEEEecccc---cce
Confidence 55678899999 6777764 45699999999999999999999999999999999999999999999998553 223
Q ss_pred EeccCCCcEEEEEEecCCCCEEEEEcCCCcEEEEECCCceeeeeeecccccceEEEEEecCCCEEEEEcCCCcEEEEEee
Q 003579 219 FTHSMRGAVTALAFSSDGQPLLASGASSGVISIWNLEKRRLQSVIREAHDNAIISLHFFANEPVLMSASADNSIKMWIFD 298 (809)
Q Consensus 219 ~~~~~~~~V~~l~fs~dg~~~lasg~~dg~I~iwdl~~~~~~~~~~~~h~~~V~~l~~~~~~~~l~s~s~d~~i~vw~~~ 298 (809)
++-.|.+.|.|+.|+|-.. .|++++- ...-+|..+....... .....+.+++|..||.+++.|-.||+|.+-+-
T Consensus 88 LkYSH~D~IQCMsFNP~~h-~LasCsL-sdFglWS~~qK~V~K~---kss~R~~~CsWtnDGqylalG~~nGTIsiRNk- 161 (1081)
T KOG1538|consen 88 LKYSHNDAIQCMSFNPITH-QLASCSL-SDFGLWSPEQKSVSKH---KSSSRIICCSWTNDGQYLALGMFNGTISIRNK- 161 (1081)
T ss_pred eeeccCCeeeEeecCchHH-Hhhhcch-hhccccChhhhhHHhh---hhheeEEEeeecCCCcEEEEeccCceEEeecC-
Confidence 3344578999999999887 7888874 4577898765543322 23567899999999999999999999998732
Q ss_pred CCCCCceeEEeccCCCCCCeeEEEecCC-----CEEEEEECCCCEEEEEeeecccceecchhhHHHHHhhccchhhhhcc
Q 003579 299 TTDGDPRLLRFRSGHSAPPLCIRFYANG-----RHILSAGQDRAFRLFSVIQDQQSRELSQRHVAKRARKLKMKEEELKL 373 (809)
Q Consensus 299 ~~~~~~~~~~~~~~h~~~v~~i~~~~~~-----~~l~s~~~dg~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 373 (809)
.......+....|...+|.+++|+|.. ..+++.....++.++.+...
T Consensus 162 -~gEek~~I~Rpgg~Nspiwsi~~~p~sg~G~~di~aV~DW~qTLSFy~LsG~--------------------------- 213 (1081)
T KOG1538|consen 162 -NGEEKVKIERPGGSNSPIWSICWNPSSGEGRNDILAVADWGQTLSFYQLSGK--------------------------- 213 (1081)
T ss_pred -CCCcceEEeCCCCCCCCceEEEecCCCCCCccceEEEEeccceeEEEEecce---------------------------
Confidence 222223344445678899999999943 24555555555555544221
Q ss_pred CceeEEeeccccccccceeEEeecCCceEEEEEeeeeeecceeeecCCCCCCCeEEEEEcCCCCEEEEEeCCCcEEEEEC
Q 003579 374 KPVIAFDCAEIRERDWCNVVTCHMDTAQAYVWRLQNFVLGEHILRPCPENPTAVKACTISACGNFAVLGTAGGWIERFNL 453 (809)
Q Consensus 374 ~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~v~~v~~s~~g~~l~~g~~~g~i~i~~~ 453 (809)
..++ ...-.-...|+.+-++|.++++|++++.+.+|.-
T Consensus 214 -------------------------------------~Igk-----~r~L~FdP~CisYf~NGEy~LiGGsdk~L~~fTR 251 (1081)
T KOG1538|consen 214 -------------------------------------QIGK-----DRALNFDPCCISYFTNGEYILLGGSDKQLSLFTR 251 (1081)
T ss_pred -------------------------------------eecc-----cccCCCCchhheeccCCcEEEEccCCCceEEEee
Confidence 1110 1111245678889999999999999999999974
Q ss_pred CCCceeeeeeCcccccccCccccEEEEEEcCCCCEEEEEeCcCeEEEEECC
Q 003579 454 QSGISRGSYLDMSERSNYAHNGEVVGVACDSTNTLMISAGYHGDIKVWDFK 504 (809)
Q Consensus 454 ~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~l~s~~~dg~i~iwd~~ 504 (809)
.|....+.. .....|+.++..|++++++.|+.||+|..|++.
T Consensus 252 -~GvrLGTvg--------~~D~WIWtV~~~PNsQ~v~~GCqDGTiACyNl~ 293 (1081)
T KOG1538|consen 252 -DGVRLGTVG--------EQDSWIWTVQAKPNSQYVVVGCQDGTIACYNLI 293 (1081)
T ss_pred -cCeEEeecc--------ccceeEEEEEEccCCceEEEEEccCeeehhhhH
Confidence 455555554 466789999999999999999999999999864
No 145
>KOG0321 consensus WD40 repeat-containing protein L2DTL [Function unknown]
Probab=99.90 E-value=3e-22 Score=204.22 Aligned_cols=386 Identities=17% Similarity=0.168 Sum_probs=260.2
Q ss_pred CCCEEEEEeCCCeEEEEeCCCCce------EEEEcCCCCCEEEEEEcCCCCEEEEEeCCCeEEEEEeeCCeEEEE--Eec
Q 003579 150 YLNKVIVGSQEGSLQLWNISTKKK------LYEFKGWGSSISSCVSSPALDVVAVGCSDGKIHVHNVRYDEELVT--FTH 221 (809)
Q Consensus 150 ~~~~l~~~~~dg~i~lwd~~~~~~------~~~~~~~~~~I~~l~~sp~~~~la~g~~dg~i~iwd~~~~~~~~~--~~~ 221 (809)
+-..|+++.++|.|.++|.+.... ++.+..|...|..+.|.|....|++++.|.++++||++..+.+.. +.+
T Consensus 63 ~eHiLavadE~G~i~l~dt~~~~fr~ee~~lk~~~aH~nAifDl~wapge~~lVsasGDsT~r~Wdvk~s~l~G~~~~~G 142 (720)
T KOG0321|consen 63 KEHILAVADEDGGIILFDTKSIVFRLEERQLKKPLAHKNAIFDLKWAPGESLLVSASGDSTIRPWDVKTSRLVGGRLNLG 142 (720)
T ss_pred ccceEEEecCCCceeeecchhhhcchhhhhhcccccccceeEeeccCCCceeEEEccCCceeeeeeeccceeecceeecc
Confidence 336799999999999999865432 355678999999999999777899999999999999999887766 444
Q ss_pred cCCCcEEEEEEecCCCCEEEEEcCCCcEEEEECCCcee---------------------------eeeeecccccceEE-
Q 003579 222 SMRGAVTALAFSSDGQPLLASGASSGVISIWNLEKRRL---------------------------QSVIREAHDNAIIS- 273 (809)
Q Consensus 222 ~~~~~V~~l~fs~dg~~~lasg~~dg~I~iwdl~~~~~---------------------------~~~~~~~h~~~V~~- 273 (809)
|.+.|.+++|.++...++++|+.||.|.|||++-... +..- .+|...|.+
T Consensus 143 -H~~SvkS~cf~~~n~~vF~tGgRDg~illWD~R~n~~d~~e~~~~~~~~~~n~~ptpskp~~kr~~k~-kA~s~ti~ss 220 (720)
T KOG0321|consen 143 -HTGSVKSECFMPTNPAVFCTGGRDGEILLWDCRCNGVDALEEFDNRIYGRHNTAPTPSKPLKKRIRKW-KAASNTIFSS 220 (720)
T ss_pred -cccccchhhhccCCCcceeeccCCCcEEEEEEeccchhhHHHHhhhhhccccCCCCCCchhhcccccc-ccccCceeee
Confidence 4899999999999998999999999999999863320 0111 145555665
Q ss_pred --EEEecCCCEEEEEcC-CCcEEEEEeeCCCCCc----eeEEeccCC---CCCCeeEEEecCCCEEEEEECCCCEEEEEe
Q 003579 274 --LHFFANEPVLMSASA-DNSIKMWIFDTTDGDP----RLLRFRSGH---SAPPLCIRFYANGRHILSAGQDRAFRLFSV 343 (809)
Q Consensus 274 --l~~~~~~~~l~s~s~-d~~i~vw~~~~~~~~~----~~~~~~~~h---~~~v~~i~~~~~~~~l~s~~~dg~i~~wd~ 343 (809)
+.+..|+..|+++|. |+.|+|||+....... .......-| .-.+.++.....|.+|+....|++|..|++
T Consensus 221 vTvv~fkDe~tlaSaga~D~~iKVWDLRk~~~~~r~ep~~~~~~~t~skrs~G~~nL~lDssGt~L~AsCtD~sIy~ynm 300 (720)
T KOG0321|consen 221 VTVVLFKDESTLASAGAADSTIKVWDLRKNYTAYRQEPRGSDKYPTHSKRSVGQVNLILDSSGTYLFASCTDNSIYFYNM 300 (720)
T ss_pred eEEEEEeccceeeeccCCCcceEEEeecccccccccCCCcccCccCcccceeeeEEEEecCCCCeEEEEecCCcEEEEec
Confidence 666778889999988 9999999998764322 112222223 335667777777888888778999999998
Q ss_pred eecccceecchhhHHHHHhhccchhhhhccCceeEEeeccccccccceeEEeecCCceEEEEEeeeeeecceeeecCCCC
Q 003579 344 IQDQQSRELSQRHVAKRARKLKMKEEELKLKPVIAFDCAEIRERDWCNVVTCHMDTAQAYVWRLQNFVLGEHILRPCPEN 423 (809)
Q Consensus 344 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~ 423 (809)
.......... +... ..
T Consensus 301 ~s~s~sP~~~-------------------------~sg~---------------------------------------~~ 316 (720)
T KOG0321|consen 301 RSLSISPVAE-------------------------FSGK---------------------------------------LN 316 (720)
T ss_pred cccCcCchhh-------------------------ccCc---------------------------------------cc
Confidence 7653321110 0000 00
Q ss_pred CCCeEEEEEcCCCCEEEEEeCCCcEEEEECCCCceeeeeeCcccccccCccccEEEEEEcCCC-CEEEEEeCcCeEEEEE
Q 003579 424 PTAVKACTISACGNFAVLGTAGGWIERFNLQSGISRGSYLDMSERSNYAHNGEVVGVACDSTN-TLMISAGYHGDIKVWD 502 (809)
Q Consensus 424 ~~~v~~v~~s~~g~~l~~g~~~g~i~i~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~-~~l~s~~~dg~i~iwd 502 (809)
...-..-..+|++.+++.|+.++..++|.+.+........ .+|...|++++|.|.. .-+++|+.|..+++|+
T Consensus 317 ~sf~vks~lSpd~~~l~SgSsd~~ayiw~vs~~e~~~~~l-------~Ght~eVt~V~w~pS~~t~v~TcSdD~~~kiW~ 389 (720)
T KOG0321|consen 317 SSFYVKSELSPDDCSLLSGSSDEQAYIWVVSSPEAPPALL-------LGHTREVTTVRWLPSATTPVATCSDDFRVKIWR 389 (720)
T ss_pred ceeeeeeecCCCCceEeccCCCcceeeeeecCccCChhhh-------hCcceEEEEEeeccccCCCceeeccCcceEEEe
Confidence 0222334679999999999999999999998876655443 4999999999998854 4578889999999999
Q ss_pred CCCCcee--------------eeeecC--------------------------CCeEEEEEeeCCCEEEEEe----CCCe
Q 003579 503 FKGRDLK--------------SRWEVG--------------------------CSLVKIVYHRVNGLLATVA----DDLV 538 (809)
Q Consensus 503 ~~~~~~~--------------~~~~~~--------------------------~~i~~~~~s~~~~~la~~~----~d~~ 538 (809)
+..+-.. ..+..+ .....++..|.+.-.+.+. ....
T Consensus 390 l~~~l~e~~~adk~s~v~~~~~rfk~~~p~~~nv~ss~~~t~~~pR~~~~r~~ssP~s~a~~~s~~s~~~~~~~t~qt~~ 469 (720)
T KOG0321|consen 390 LSNGLEEIYAADKDSIVYEYSRRFKGHLPQVLNVNSSLRKTYKDPREGMNRISSSPVSLACSPSGASDDCGYGVTDQTSG 469 (720)
T ss_pred ccCchhhccccccchhhhhhhhhhhccccccccccccccccccchhhhccccccCccchhcCcCCcccccCCCccccccc
Confidence 8654111 111000 1111122222222222111 1112
Q ss_pred EEEEEcCCCeEEE--EEecCCCCeeeEEECCCCCEEEEEeC-----------CCeEEEEEcCCccEEEEeeeCcceEEEE
Q 003579 539 IRLFDVVALRMVR--KFEGHTDRITDFCFSEDGKWLLSSGM-----------DGSLRIWDVILARQIDAIHVDVSITALS 605 (809)
Q Consensus 539 I~v~d~~~~~~~~--~~~~h~~~I~~l~fspdg~~l~s~s~-----------D~~I~vwd~~~~~~i~~~~~~~~v~~l~ 605 (809)
|...+....+... .-.+|...|+...+++.++.+++.+- +..+++|...........+.......+.
T Consensus 470 i~~~p~kr~~~~ss~~s~~~~~Svs~~d~ss~~s~~~s~SP~~~~~stpp~sets~~s~~s~l~pps~~~r~ar~~~r~i 549 (720)
T KOG0321|consen 470 IVVFPTKRNKPSSSRGSGGHLSSVSAEDWSSEKSQLASRSPQKNRGSTPPISETSVNSPNSSLHPPSANLREARKKSRLI 549 (720)
T ss_pred ceecchhccCccccccccccccccccCCCccccccccccCcccccCCCCCcCcccccccccccCCchhhhccccccccee
Confidence 3333333222211 12246777888888888878888887 8899999876655544433323455566
Q ss_pred EcC
Q 003579 606 LSP 608 (809)
Q Consensus 606 ~sp 608 (809)
|+|
T Consensus 550 fs~ 552 (720)
T KOG0321|consen 550 FSP 552 (720)
T ss_pred ccC
Confidence 665
No 146
>KOG0269 consensus WD40 repeat-containing protein [Function unknown]
Probab=99.90 E-value=6.7e-23 Score=213.55 Aligned_cols=284 Identities=20% Similarity=0.307 Sum_probs=218.3
Q ss_pred CEEEEEEcCCCCEEEEEeCCCeEEEEEeeCCe----EEEEEeccC--CCcEEEEEEecCCCCEEEEEcCCCcEEEEECCC
Q 003579 183 SISSCVSSPALDVVAVGCSDGKIHVHNVRYDE----ELVTFTHSM--RGAVTALAFSSDGQPLLASGASSGVISIWNLEK 256 (809)
Q Consensus 183 ~I~~l~~sp~~~~la~g~~dg~i~iwd~~~~~----~~~~~~~~~--~~~V~~l~fs~dg~~~lasg~~dg~I~iwdl~~ 256 (809)
...++...++...|++++. ..+.||.+.... +...+.... .-.+..+.|..-...+||+++..|.|.+||+..
T Consensus 41 ~~nAIs~nr~~~qiv~AGr-s~lklyai~~~~~~~~~~~~~k~kqn~~~S~~DVkW~~~~~NlIAT~s~nG~i~vWdlnk 119 (839)
T KOG0269|consen 41 KANAISVNRDINQIVVAGR-SLLKLYAINPNDFSEKCNHRFKTKQNKFYSAADVKWGQLYSNLIATCSTNGVISVWDLNK 119 (839)
T ss_pred ccceEeecCCcceeEEecc-cceeeEeeCcccCCcceeeecccccceeeehhhcccccchhhhheeecCCCcEEEEecCc
Confidence 4556666788777887775 467777765332 222222110 123556777765555999999999999999988
Q ss_pred ---ceeeeeeecccccceEEEEEecCCC-EEEEEcCCCcEEEEEeeCCCCCceeEEeccCCCCCCeeEEEec-CCCEEEE
Q 003579 257 ---RRLQSVIREAHDNAIISLHFFANEP-VLMSASADNSIKMWIFDTTDGDPRLLRFRSGHSAPPLCIRFYA-NGRHILS 331 (809)
Q Consensus 257 ---~~~~~~~~~~h~~~V~~l~~~~~~~-~l~s~s~d~~i~vw~~~~~~~~~~~~~~~~~h~~~v~~i~~~~-~~~~l~s 331 (809)
.+.+..+. .|...++++.|++-.+ +|++||.||.|++||+...+. ...+.+....|..+.|+| .+..+++
T Consensus 120 ~~rnk~l~~f~-EH~Rs~~~ldfh~tep~iliSGSQDg~vK~~DlR~~~S----~~t~~~nSESiRDV~fsp~~~~~F~s 194 (839)
T KOG0269|consen 120 SIRNKLLTVFN-EHERSANKLDFHSTEPNILISGSQDGTVKCWDLRSKKS----KSTFRSNSESIRDVKFSPGYGNKFAS 194 (839)
T ss_pred cccchhhhHhh-hhccceeeeeeccCCccEEEecCCCceEEEEeeecccc----cccccccchhhhceeeccCCCceEEE
Confidence 45666666 8999999999999665 889999999999999987743 344456888999999999 7788999
Q ss_pred EECCCCEEEEEeeecccceecchhhHHHHHhhccchhhhhccCceeEEeeccccccccceeEEeecCCceEEEEEeeeee
Q 003579 332 AGQDRAFRLFSVIQDQQSRELSQRHVAKRARKLKMKEEELKLKPVIAFDCAEIRERDWCNVVTCHMDTAQAYVWRLQNFV 411 (809)
Q Consensus 332 ~~~dg~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~ 411 (809)
+...|.+++||++...+...
T Consensus 195 ~~dsG~lqlWDlRqp~r~~~------------------------------------------------------------ 214 (839)
T KOG0269|consen 195 IHDSGYLQLWDLRQPDRCEK------------------------------------------------------------ 214 (839)
T ss_pred ecCCceEEEeeccCchhHHH------------------------------------------------------------
Confidence 99999999999875432110
Q ss_pred ecceeeecCCCCCCCeEEEEEcCCCCEEEEEeCCCcEEEEECCCCceeeeeeCcccccccCccccEEEEEEcCCCCEEEE
Q 003579 412 LGEHILRPCPENPTAVKACTISACGNFAVLGTAGGWIERFNLQSGISRGSYLDMSERSNYAHNGEVVGVACDSTNTLMIS 491 (809)
Q Consensus 412 ~~~~~~~~~~~~~~~v~~v~~s~~g~~l~~g~~~g~i~i~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~l~s 491 (809)
. +.+|.++|.++.|+|++.+|||
T Consensus 215 -------------------------------------------------k--------~~AH~GpV~c~nwhPnr~~lAT 237 (839)
T KOG0269|consen 215 -------------------------------------------------K--------LTAHNGPVLCLNWHPNREWLAT 237 (839)
T ss_pred -------------------------------------------------H--------hhcccCceEEEeecCCCceeee
Confidence 0 1389999999999999999999
Q ss_pred EeCcCeEEEEECCCCc--eeeeeecCCCeEEEEEeeCCCEE-EEEe--CCCeEEEEEcCCC-eEEEEEecCCCCeeeEEE
Q 003579 492 AGYHGDIKVWDFKGRD--LKSRWEVGCSLVKIVYHRVNGLL-ATVA--DDLVIRLFDVVAL-RMVRKFEGHTDRITDFCF 565 (809)
Q Consensus 492 ~~~dg~i~iwd~~~~~--~~~~~~~~~~i~~~~~s~~~~~l-a~~~--~d~~I~v~d~~~~-~~~~~~~~h~~~I~~l~f 565 (809)
||.|++|+|||..+.+ .+.++....++.++.|-|+..+. |+++ .|-.|+|||++.. -+-+++..|+..++.++|
T Consensus 238 GGRDK~vkiWd~t~~~~~~~~tInTiapv~rVkWRP~~~~hLAtcsmv~dtsV~VWDvrRPYIP~~t~~eH~~~vt~i~W 317 (839)
T KOG0269|consen 238 GGRDKMVKIWDMTDSRAKPKHTINTIAPVGRVKWRPARSYHLATCSMVVDTSVHVWDVRRPYIPYATFLEHTDSVTGIAW 317 (839)
T ss_pred cCCCccEEEEeccCCCccceeEEeecceeeeeeeccCccchhhhhhccccceEEEEeeccccccceeeeccCccccceec
Confidence 9999999999998654 45566667999999999987754 4443 4889999999865 346788899999999999
Q ss_pred CC-CCCEEEEEeCCCeEEEEEcCCc
Q 003579 566 SE-DGKWLLSSGMDGSLRIWDVILA 589 (809)
Q Consensus 566 sp-dg~~l~s~s~D~~I~vwd~~~~ 589 (809)
.. |-..|.+++.||+|..-.++++
T Consensus 318 ~~~d~~~l~s~sKD~tv~qh~~kna 342 (839)
T KOG0269|consen 318 DSGDRINLWSCSKDGTVLQHLFKNA 342 (839)
T ss_pred cCCCceeeEeecCccHHHHhhhhcc
Confidence 65 5567889999998876555443
No 147
>COG2319 FOG: WD40 repeat [General function prediction only]
Probab=99.90 E-value=4e-19 Score=195.57 Aligned_cols=372 Identities=28% Similarity=0.524 Sum_probs=285.6
Q ss_pred EEccccccEEEEEE--eCCEEEEEeCCCcEEEEEcCCCc-cccceeeeEEcCCc-cccEEEE-eCCCCCC-EEEEEeC-C
Q 003579 88 TWSRHSAKVNLLLL--FGEHILSIDIDGNMFIWAFKGIE-ENLAPVGHVKLDDK-FTPTCIM-HPDTYLN-KVIVGSQ-E 160 (809)
Q Consensus 88 ~~~~h~~~V~~l~~--~g~~l~s~~~dg~i~vWd~~~~~-~~~~~~~~~~~~~~-~~~~~~~-~p~~~~~-~l~~~~~-d 160 (809)
...+|...+..+.+ .+..++.++.|+.+.+|+..... . ...+..... ......+ +++. + .++..+. +
T Consensus 60 ~~~~~~~~i~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~d 133 (466)
T COG2319 60 LLRGHEDSITSIAFSPDGELLLSGSSDGTIKLWDLDNGEKL----IKSLEGLHDSSVSKLALSSPDG--NSILLASSSLD 133 (466)
T ss_pred eeeeccceEEEEEECCCCcEEEEecCCCcEEEEEcCCCcee----EEEEeccCCCceeeEEEECCCc--ceEEeccCCCC
Confidence 46688889998887 57888888889999999998886 3 344443222 2333334 5555 4 4444344 8
Q ss_pred CeEEEEeCCC-CceEEEEcCCCCCEEEEEEcCCCCEEEEEeC-CCeEEEEEeeCCeEEEEEeccCCCcEEEEEEecCCCC
Q 003579 161 GSLQLWNIST-KKKLYEFKGWGSSISSCVSSPALDVVAVGCS-DGKIHVHNVRYDEELVTFTHSMRGAVTALAFSSDGQP 238 (809)
Q Consensus 161 g~i~lwd~~~-~~~~~~~~~~~~~I~~l~~sp~~~~la~g~~-dg~i~iwd~~~~~~~~~~~~~~~~~V~~l~fs~dg~~ 238 (809)
+.+.+|+... ......+..|...|..++|+|++..+++++. ++.+++|++..+..+..+..+ ...|.+++|+|++..
T Consensus 134 ~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~v~~~~~~~~~~~ 212 (466)
T COG2319 134 GTVKLWDLSTPGKLIRTLEGHSESVTSLAFSPDGKLLASGSSLDGTIKLWDLRTGKPLSTLAGH-TDPVSSLAFSPDGGL 212 (466)
T ss_pred ccEEEEEecCCCeEEEEEecCcccEEEEEECCCCCEEEecCCCCCceEEEEcCCCceEEeeccC-CCceEEEEEcCCcce
Confidence 9999999988 8899999999999999999999998998885 999999999988888888774 789999999999873
Q ss_pred EEEEEcCCCcEEEEECCCceeee-eeecccccceEEEEEecCCCEEEEEcCCCcEEEEEeeCCCCCceeEEeccCCCCCC
Q 003579 239 LLASGASSGVISIWNLEKRRLQS-VIREAHDNAIISLHFFANEPVLMSASADNSIKMWIFDTTDGDPRLLRFRSGHSAPP 317 (809)
Q Consensus 239 ~lasg~~dg~I~iwdl~~~~~~~-~~~~~h~~~V~~l~~~~~~~~l~s~s~d~~i~vw~~~~~~~~~~~~~~~~~h~~~v 317 (809)
++++++.|+.|++||...+.... .+. +|.... ...|++++..+++++.|+.+++|+...... .+....+|...+
T Consensus 213 ~~~~~~~d~~i~~wd~~~~~~~~~~~~-~~~~~~-~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~---~~~~~~~~~~~v 287 (466)
T COG2319 213 LIASGSSDGTIRLWDLSTGKLLRSTLS-GHSDSV-VSSFSPDGSLLASGSSDGTIRLWDLRSSSS---LLRTLSGHSSSV 287 (466)
T ss_pred EEEEecCCCcEEEEECCCCcEEeeecC-CCCcce-eEeECCCCCEEEEecCCCcEEEeeecCCCc---EEEEEecCCccE
Confidence 45555899999999998777777 455 787775 448999998999999999999998876643 222226889999
Q ss_pred eeEEEecCCCEEEEEECCCCEEEEEeeecccceecchhhHHHHHhhccchhhhhccCceeEEeeccccccccceeEEeec
Q 003579 318 LCIRFYANGRHILSAGQDRAFRLFSVIQDQQSRELSQRHVAKRARKLKMKEEELKLKPVIAFDCAEIRERDWCNVVTCHM 397 (809)
Q Consensus 318 ~~i~~~~~~~~l~s~~~dg~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~ 397 (809)
.++.|.|++..+++++.|+.+.+|+...........
T Consensus 288 ~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~-------------------------------------------- 323 (466)
T COG2319 288 LSVAFSPDGKLLASGSSDGTVRLWDLETGKLLSSLT-------------------------------------------- 323 (466)
T ss_pred EEEEECCCCCEEEEeeCCCcEEEEEcCCCceEEEee--------------------------------------------
Confidence 999999988888888888888999754332111100
Q ss_pred CCceEEEEEeeeeeecceeeecCCCCCCCeEEEEEcCCCCEEEEEeCCCcEEEEECCCCceeeeeeCcccccccCccccE
Q 003579 398 DTAQAYVWRLQNFVLGEHILRPCPENPTAVKACTISACGNFAVLGTAGGWIERFNLQSGISRGSYLDMSERSNYAHNGEV 477 (809)
Q Consensus 398 ~~~~~~~w~~~~~~~~~~~~~~~~~~~~~v~~v~~s~~g~~l~~g~~~g~i~i~~~~~~~~~~~~~~~~~~~~~~h~~~v 477 (809)
. ..|...+
T Consensus 324 ----------------------------------------------------------------~--------~~~~~~~ 331 (466)
T COG2319 324 ----------------------------------------------------------------L--------KGHEGPV 331 (466)
T ss_pred ----------------------------------------------------------------e--------cccCCce
Confidence 0 1455567
Q ss_pred EEEEEcCCCCEEEEE-eCcCeEEEEECCCCceeeeeecCCCeEEEEEeeCCCEEEE-EeCCCeEEEEEcCCCeEEEEEec
Q 003579 478 VGVACDSTNTLMISA-GYHGDIKVWDFKGRDLKSRWEVGCSLVKIVYHRVNGLLAT-VADDLVIRLFDVVALRMVRKFEG 555 (809)
Q Consensus 478 ~~l~~~~~~~~l~s~-~~dg~i~iwd~~~~~~~~~~~~~~~i~~~~~s~~~~~la~-~~~d~~I~v~d~~~~~~~~~~~~ 555 (809)
..+.+.+++..++.+ ..|+.+.+|+...............+..+.+.+ ...+.. +..++.+.+|+............
T Consensus 332 ~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 410 (466)
T COG2319 332 SSLSFSPDGSLLVSGGSDDGTIRLWDLRTGKPLKTLEGHSNVLSVSFSP-DGRVVSSGSTDGTVRLWDLSTGSLLRNLDG 410 (466)
T ss_pred EEEEECCCCCEEEEeecCCCcEEeeecCCCceeEEecCCceEEEEEECC-CCCEEEEecCCCceEEEecccCeeeeeccC
Confidence 777773232455555 677889999988877333333334478888888 543343 67899999999999888877776
Q ss_pred CCCCeeeEEECCCCCEEEEEeCCCeEEEEEcCC
Q 003579 556 HTDRITDFCFSEDGKWLLSSGMDGSLRIWDVIL 588 (809)
Q Consensus 556 h~~~I~~l~fspdg~~l~s~s~D~~I~vwd~~~ 588 (809)
+...+....+++++..+++++.++.+++|++.+
T Consensus 411 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 443 (466)
T COG2319 411 HTSRVTSLDFSPDGKSLASGSSDNTIRLWDLKT 443 (466)
T ss_pred CCCcEEEEEECCCCcEEEEecCCCcEEEEeccC
Confidence 657899999999999999999999999999998
No 148
>COG2319 FOG: WD40 repeat [General function prediction only]
Probab=99.90 E-value=4e-19 Score=195.62 Aligned_cols=372 Identities=26% Similarity=0.457 Sum_probs=291.1
Q ss_pred EEEcCCCCCEEEEEEcCCCCEEEEEeCCCeEEEEEeeCCe-EEEEEeccCCCcEEEEEE-ecCCCCEEEEEc-CCCcEEE
Q 003579 175 YEFKGWGSSISSCVSSPALDVVAVGCSDGKIHVHNVRYDE-ELVTFTHSMRGAVTALAF-SSDGQPLLASGA-SSGVISI 251 (809)
Q Consensus 175 ~~~~~~~~~I~~l~~sp~~~~la~g~~dg~i~iwd~~~~~-~~~~~~~~~~~~V~~l~f-s~dg~~~lasg~-~dg~I~i 251 (809)
..+..|...+.++.+.+.+..++.++.|+.+.+|+...+. .+..+...+...+..+.+ .+++..+++..+ .++.+.+
T Consensus 59 ~~~~~~~~~i~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~ 138 (466)
T COG2319 59 LLLRGHEDSITSIAFSPDGELLLSGSSDGTIKLWDLDNGEKLIKSLEGLHDSSVSKLALSSPDGNSILLASSSLDGTVKL 138 (466)
T ss_pred heeeeccceEEEEEECCCCcEEEEecCCCcEEEEEcCCCceeEEEEeccCCCceeeEEEECCCcceEEeccCCCCccEEE
Confidence 3456789999999999999999999999999999999887 666666643346777777 777763444434 4899999
Q ss_pred EECCC-ceeeeeeecccccceEEEEEecCCCEEEEEcC-CCcEEEEEeeCCCCCceeEEeccCCCCCCeeEEEecCCC-E
Q 003579 252 WNLEK-RRLQSVIREAHDNAIISLHFFANEPVLMSASA-DNSIKMWIFDTTDGDPRLLRFRSGHSAPPLCIRFYANGR-H 328 (809)
Q Consensus 252 wdl~~-~~~~~~~~~~h~~~V~~l~~~~~~~~l~s~s~-d~~i~vw~~~~~~~~~~~~~~~~~h~~~v~~i~~~~~~~-~ 328 (809)
||... ......+. .|...|..+.|+|++..+++++. |+.+++|+.... ..+....+|...+.+++|+|++. .
T Consensus 139 ~~~~~~~~~~~~~~-~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~v~~~~~~~~~~~~ 213 (466)
T COG2319 139 WDLSTPGKLIRTLE-GHSESVTSLAFSPDGKLLASGSSLDGTIKLWDLRTG----KPLSTLAGHTDPVSSLAFSPDGGLL 213 (466)
T ss_pred EEecCCCeEEEEEe-cCcccEEEEEECCCCCEEEecCCCCCceEEEEcCCC----ceEEeeccCCCceEEEEEcCCcceE
Confidence 99998 67777777 89999999999999998888886 999999988763 56667778999999999999987 5
Q ss_pred EEEEECCCCEEEEEeeecccceecchhhHHHHHhhccchhhhhccCceeEEeeccccccccceeEEeecCCceEEEEEee
Q 003579 329 ILSAGQDRAFRLFSVIQDQQSRELSQRHVAKRARKLKMKEEELKLKPVIAFDCAEIRERDWCNVVTCHMDTAQAYVWRLQ 408 (809)
Q Consensus 329 l~s~~~dg~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~ 408 (809)
+++++.|+.+++|+.........
T Consensus 214 ~~~~~~d~~i~~wd~~~~~~~~~--------------------------------------------------------- 236 (466)
T COG2319 214 IASGSSDGTIRLWDLSTGKLLRS--------------------------------------------------------- 236 (466)
T ss_pred EEEecCCCcEEEEECCCCcEEee---------------------------------------------------------
Confidence 55559999999996542221110
Q ss_pred eeeecceeeecCCCCCCCeEEEEEcCCCCEEEEEeCCCcEEEEECCCCce-eeeeeCcccccccCccccEEEEEEcCCCC
Q 003579 409 NFVLGEHILRPCPENPTAVKACTISACGNFAVLGTAGGWIERFNLQSGIS-RGSYLDMSERSNYAHNGEVVGVACDSTNT 487 (809)
Q Consensus 409 ~~~~~~~~~~~~~~~~~~v~~v~~s~~g~~l~~g~~~g~i~i~~~~~~~~-~~~~~~~~~~~~~~h~~~v~~l~~~~~~~ 487 (809)
....|.... ...+++++.++++++.++.+++|++..... ...+ ..|...+.++.++|++.
T Consensus 237 ----------~~~~~~~~~-~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~--------~~~~~~v~~~~~~~~~~ 297 (466)
T COG2319 237 ----------TLSGHSDSV-VSSFSPDGSLLASGSSDGTIRLWDLRSSSSLLRTL--------SGHSSSVLSVAFSPDGK 297 (466)
T ss_pred ----------ecCCCCcce-eEeECCCCCEEEEecCCCcEEEeeecCCCcEEEEE--------ecCCccEEEEEECCCCC
Confidence 111222332 228999999999999999999999987765 3332 27889999999999888
Q ss_pred EEEEEeCcCeEEEEECCCCceeeeee--cC-CCeEEEEEeeCCCEEEEE-eCCCeEEEEEcCCCeEEEEEecCCCCeeeE
Q 003579 488 LMISAGYHGDIKVWDFKGRDLKSRWE--VG-CSLVKIVYHRVNGLLATV-ADDLVIRLFDVVALRMVRKFEGHTDRITDF 563 (809)
Q Consensus 488 ~l~s~~~dg~i~iwd~~~~~~~~~~~--~~-~~i~~~~~s~~~~~la~~-~~d~~I~v~d~~~~~~~~~~~~h~~~I~~l 563 (809)
.+++++.|+.+++|+..+........ .+ ..+..+.+.+++..++.+ ..|+.+++|+............+. .+..+
T Consensus 298 ~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~-~~~~~ 376 (466)
T COG2319 298 LLASGSSDGTVRLWDLETGKLLSSLTLKGHEGPVSSLSFSPDGSLLVSGGSDDGTIRLWDLRTGKPLKTLEGHS-NVLSV 376 (466)
T ss_pred EEEEeeCCCcEEEEEcCCCceEEEeeecccCCceEEEEECCCCCEEEEeecCCCcEEeeecCCCceeEEecCCc-eEEEE
Confidence 88889999999999999887766665 34 458888883332556555 678999999998887333333222 28899
Q ss_pred EECCCCCEEEE-EeCCCeEEEEEcCCccEEEEeeeC-cceEEEEEcCCCCeEEEEEeCCCeEEEeecCc
Q 003579 564 CFSEDGKWLLS-SGMDGSLRIWDVILARQIDAIHVD-VSITALSLSPNMDVLATAHVDQNGVYLWVNRC 630 (809)
Q Consensus 564 ~fspdg~~l~s-~s~D~~I~vwd~~~~~~i~~~~~~-~~v~~l~~spdg~~lat~~~d~~~i~lW~~~~ 630 (809)
.+++ ...++. +..++.+.+|+............. ..+....+++++..+++++.+. .+++|+...
T Consensus 377 ~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~ 443 (466)
T COG2319 377 SFSP-DGRVVSSGSTDGTVRLWDLSTGSLLRNLDGHTSRVTSLDFSPDGKSLASGSSDN-TIRLWDLKT 443 (466)
T ss_pred EECC-CCCEEEEecCCCceEEEecccCeeeeeccCCCCcEEEEEECCCCcEEEEecCCC-cEEEEeccC
Confidence 9999 544444 688999999999999888887777 7899999999999999977777 699999876
No 149
>KOG4328 consensus WD40 protein [Function unknown]
Probab=99.90 E-value=1e-21 Score=192.91 Aligned_cols=304 Identities=16% Similarity=0.176 Sum_probs=232.3
Q ss_pred EeCCCCceEEEEcCCCCCEEEEEEcCCC--CEEEEEeCCCeEEEEEeeCC---e-EEEEEeccCCCcEEEEEEecCCCCE
Q 003579 166 WNISTKKKLYEFKGWGSSISSCVSSPAL--DVVAVGCSDGKIHVHNVRYD---E-ELVTFTHSMRGAVTALAFSSDGQPL 239 (809)
Q Consensus 166 wd~~~~~~~~~~~~~~~~I~~l~~sp~~--~~la~g~~dg~i~iwd~~~~---~-~~~~~~~~~~~~V~~l~fs~dg~~~ 239 (809)
+|+.+.......+.+.++|++++|+|.. +++|+|..-|.|-+||+.+. . .+..+.. |.++|.+|.|+|.....
T Consensus 171 l~l~~~~~~~v~kv~~~Rit~l~fHPt~~~~lva~GdK~G~VG~Wn~~~~~~d~d~v~~f~~-hs~~Vs~l~F~P~n~s~ 249 (498)
T KOG4328|consen 171 LDLDDYRILNVAKVTDRRITSLAFHPTENRKLVAVGDKGGQVGLWNFGTQEKDKDGVYLFTP-HSGPVSGLKFSPANTSQ 249 (498)
T ss_pred cccccceecceeEecccceEEEEecccCcceEEEEccCCCcEEEEecCCCCCccCceEEecc-CCccccceEecCCChhh
Confidence 4444555556677788999999999965 58999999999999999522 2 3444444 48899999999988778
Q ss_pred EEEEcCCCcEEEEECCCceeeeeeec-ccccceEEEEEecCCCEEEEEcCCCcEEEEEeeCCCCCceeEEeccCCCCCCe
Q 003579 240 LASGASSGVISIWNLEKRRLQSVIRE-AHDNAIISLHFFANEPVLMSASADNSIKMWIFDTTDGDPRLLRFRSGHSAPPL 318 (809)
Q Consensus 240 lasg~~dg~I~iwdl~~~~~~~~~~~-~h~~~V~~l~~~~~~~~l~s~s~d~~i~vw~~~~~~~~~~~~~~~~~h~~~v~ 318 (809)
+.+.+.||+|++-|++++.....+.. .....+.++.|+.+.+.++.+..=|...+||.+...... ..+.-|...|.
T Consensus 250 i~ssSyDGtiR~~D~~~~i~e~v~s~~~d~~~fs~~d~~~e~~~vl~~~~~G~f~~iD~R~~~s~~---~~~~lh~kKI~ 326 (498)
T KOG4328|consen 250 IYSSSYDGTIRLQDFEGNISEEVLSLDTDNIWFSSLDFSAESRSVLFGDNVGNFNVIDLRTDGSEY---ENLRLHKKKIT 326 (498)
T ss_pred eeeeccCceeeeeeecchhhHHHhhcCccceeeeeccccCCCccEEEeecccceEEEEeecCCccc---hhhhhhhcccc
Confidence 88999999999999998754443331 244567889999988888888887899999998876433 33346788999
Q ss_pred eEEEec-CCCEEEEEECCCCEEEEEeeecccceecchhhHHHHHhhccchhhhhccCceeEEeeccccccccceeEEeec
Q 003579 319 CIRFYA-NGRHILSAGQDRAFRLFSVIQDQQSRELSQRHVAKRARKLKMKEEELKLKPVIAFDCAEIRERDWCNVVTCHM 397 (809)
Q Consensus 319 ~i~~~~-~~~~l~s~~~dg~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~ 397 (809)
.++++| ...+|+++|.|++.++||+++-....+
T Consensus 327 sv~~NP~~p~~laT~s~D~T~kIWD~R~l~~K~s---------------------------------------------- 360 (498)
T KOG4328|consen 327 SVALNPVCPWFLATASLDQTAKIWDLRQLRGKAS---------------------------------------------- 360 (498)
T ss_pred eeecCCCCchheeecccCcceeeeehhhhcCCCC----------------------------------------------
Confidence 999999 667899999999999999865321110
Q ss_pred CCceEEEEEeeeeeecceeeecCCCCCCCeEEEEEcCCCCEEEEEeCCCcEEEEECCCCceeeeeeCcccccccCccccE
Q 003579 398 DTAQAYVWRLQNFVLGEHILRPCPENPTAVKACTISACGNFAVLGTAGGWIERFNLQSGISRGSYLDMSERSNYAHNGEV 477 (809)
Q Consensus 398 ~~~~~~~w~~~~~~~~~~~~~~~~~~~~~v~~v~~s~~g~~l~~g~~~g~i~i~~~~~~~~~~~~~~~~~~~~~~h~~~v 477 (809)
| +| ....|...|
T Consensus 361 ------------------------------------p---~l-----------------------------st~~HrrsV 372 (498)
T KOG4328|consen 361 ------------------------------------P---FL-----------------------------STLPHRRSV 372 (498)
T ss_pred ------------------------------------c---ce-----------------------------eccccccee
Confidence 0 00 013799999
Q ss_pred EEEEEcCCCCEEEEEeCcCeEEEEEC----CCCceeeeeecC------CCeEEEEEeeCCCEEEEEeCCCeEEEEEcCCC
Q 003579 478 VGVACDSTNTLMISAGYHGDIKVWDF----KGRDLKSRWEVG------CSLVKIVYHRVNGLLATVADDLVIRLFDVVAL 547 (809)
Q Consensus 478 ~~l~~~~~~~~l~s~~~dg~i~iwd~----~~~~~~~~~~~~------~~i~~~~~s~~~~~la~~~~d~~I~v~d~~~~ 547 (809)
.+..|+|.+-.|++.+.|..|+|||. ..-.+..++.+. -.....+|.|+..++++|-.-..|-|+|-..+
T Consensus 373 ~sAyFSPs~gtl~TT~~D~~IRv~dss~~sa~~~p~~~I~Hn~~t~RwlT~fKA~W~P~~~li~vg~~~r~IDv~~~~~~ 452 (498)
T KOG4328|consen 373 NSAYFSPSGGTLLTTCQDNEIRVFDSSCISAKDEPLGTIPHNNRTGRWLTPFKAAWDPDYNLIVVGRYPRPIDVFDGNGG 452 (498)
T ss_pred eeeEEcCCCCceEeeccCCceEEeecccccccCCccceeeccCcccccccchhheeCCCccEEEEeccCcceeEEcCCCC
Confidence 99999999888999999999999998 344555666554 23456789999999999999899999999999
Q ss_pred eEEEEEecCCC-Ceee-EEECCCCCEEEEE-eCCCeEEEEEcC
Q 003579 548 RMVRKFEGHTD-RITD-FCFSEDGKWLLSS-GMDGSLRIWDVI 587 (809)
Q Consensus 548 ~~~~~~~~h~~-~I~~-l~fspdg~~l~s~-s~D~~I~vwd~~ 587 (809)
+.+..+.+... .|.+ ..|+|-+.-+++| +..|.|.||--.
T Consensus 453 q~v~el~~P~~~tI~~vn~~HP~~~~~~aG~~s~Gki~vft~k 495 (498)
T KOG4328|consen 453 QMVCELHDPESSTIPSVNEFHPMRDTLAAGGNSSGKIYVFTNK 495 (498)
T ss_pred EEeeeccCccccccccceeecccccceeccCCccceEEEEecC
Confidence 98888765543 4554 4799987745544 567888888644
No 150
>KOG0650 consensus WD40 repeat nucleolar protein Bop1, involved in ribosome biogenesis [Translation, ribosomal structure and biogenesis]
Probab=99.90 E-value=5.2e-22 Score=200.78 Aligned_cols=317 Identities=14% Similarity=0.186 Sum_probs=235.3
Q ss_pred cccccceEEEEEecCCCEEEEEcCCCcEEEEEeeCCCCCceeEEeccCCCCCCeeEEEecCCC-EEEEEECCCCEEEEEe
Q 003579 265 EAHDNAIISLHFFANEPVLMSASADNSIKMWIFDTTDGDPRLLRFRSGHSAPPLCIRFYANGR-HILSAGQDRAFRLFSV 343 (809)
Q Consensus 265 ~~h~~~V~~l~~~~~~~~l~s~s~d~~i~vw~~~~~~~~~~~~~~~~~h~~~v~~i~~~~~~~-~l~s~~~dg~i~~wd~ 343 (809)
.+|.+.|.++...|.|.+|++|+.||+|++|.+.++ ++++... ..+.|.|++|+|.+. .++.....+.+.+.+.
T Consensus 397 rGHtg~Vr~iSvdp~G~wlasGsdDGtvriWEi~Tg----Rcvr~~~-~d~~I~~vaw~P~~~~~vLAvA~~~~~~ivnp 471 (733)
T KOG0650|consen 397 RGHTGLVRSISVDPSGEWLASGSDDGTVRIWEIATG----RCVRTVQ-FDSEIRSVAWNPLSDLCVLAVAVGECVLIVNP 471 (733)
T ss_pred eccCCeEEEEEecCCcceeeecCCCCcEEEEEeecc----eEEEEEe-ecceeEEEEecCCCCceeEEEEecCceEEeCc
Confidence 399999999999999999999999999999998877 6776653 445799999999543 3333444444666554
Q ss_pred eecccceecchhhHHHHHhhccchhhhhccCceeEEeeccccccccceeEEeecCCceEEEEEeeeeeecceeeecCCCC
Q 003579 344 IQDQQSRELSQRHVAKRARKLKMKEEELKLKPVIAFDCAEIRERDWCNVVTCHMDTAQAYVWRLQNFVLGEHILRPCPEN 423 (809)
Q Consensus 344 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~ 423 (809)
.-+.....-... +.+.-.| .-...+.++..|.-........-+.....+
T Consensus 472 ~~G~~~e~~~t~-------------ell~~~~------------------~~~~p~~~~~~W~~~~~~e~~~~v~~~I~~ 520 (733)
T KOG0650|consen 472 IFGDRLEVGPTK-------------ELLASAP------------------NESEPDAAVVTWSRASLDELEKGVCIVIKH 520 (733)
T ss_pred cccchhhhcchh-------------hhhhcCC------------------CccCCcccceeechhhhhhhccceEEEEec
Confidence 433211110000 0000000 001123355666554322222112223346
Q ss_pred CCCeEEEEEcCCCCEEEEEeCC---CcEEEEECCCCceeeeeeCcccccccCccccEEEEEEcCCCCEEEEEeCcCeEEE
Q 003579 424 PTAVKACTISACGNFAVLGTAG---GWIERFNLQSGISRGSYLDMSERSNYAHNGEVVGVACDSTNTLMISAGYHGDIKV 500 (809)
Q Consensus 424 ~~~v~~v~~s~~g~~l~~g~~~---g~i~i~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~l~s~~~dg~i~i 500 (809)
...|+.+.|+..|.|+++...+ ..|.++++........|. ...+.|.++.|+|...+|+.++. ..|++
T Consensus 521 ~k~i~~vtWHrkGDYlatV~~~~~~~~VliHQLSK~~sQ~PF~--------kskG~vq~v~FHPs~p~lfVaTq-~~vRi 591 (733)
T KOG0650|consen 521 PKSIRQVTWHRKGDYLATVMPDSGNKSVLIHQLSKRKSQSPFR--------KSKGLVQRVKFHPSKPYLFVATQ-RSVRI 591 (733)
T ss_pred CCccceeeeecCCceEEEeccCCCcceEEEEecccccccCchh--------hcCCceeEEEecCCCceEEEEec-cceEE
Confidence 6899999999999999987664 478888888776665553 56788999999999999988877 78999
Q ss_pred EECCCCceeeeeecC-CCeEEEEEeeCCCEEEEEeCCCeEEEEEcCCC-eEEEEEecCCCCeeeEEECCCCCEEEEEeCC
Q 003579 501 WDFKGRDLKSRWEVG-CSLVKIVYHRVNGLLATVADDLVIRLFDVVAL-RMVRKFEGHTDRITDFCFSEDGKWLLSSGMD 578 (809)
Q Consensus 501 wd~~~~~~~~~~~~~-~~i~~~~~s~~~~~la~~~~d~~I~v~d~~~~-~~~~~~~~h~~~I~~l~fspdg~~l~s~s~D 578 (809)
||+..+.+++.+... ..|..++.||.|.-|++++.|+.+..+|+.-. ++.+++.-|...+++++|++.-.++++|+.|
T Consensus 592 YdL~kqelvKkL~tg~kwiS~msihp~GDnli~gs~d~k~~WfDldlsskPyk~lr~H~~avr~Va~H~ryPLfas~sdD 671 (733)
T KOG0650|consen 592 YDLSKQELVKKLLTGSKWISSMSIHPNGDNLILGSYDKKMCWFDLDLSSKPYKTLRLHEKAVRSVAFHKRYPLFASGSDD 671 (733)
T ss_pred EehhHHHHHHHHhcCCeeeeeeeecCCCCeEEEecCCCeeEEEEcccCcchhHHhhhhhhhhhhhhhccccceeeeecCC
Confidence 999998888877655 78999999999999999999999999999754 6788899999999999999999999999999
Q ss_pred CeEEEEE------cCCccE---EEEeeeCc-----ceEEEEEcCCCCeEEEEEeCCCeEEEee
Q 003579 579 GSLRIWD------VILARQ---IDAIHVDV-----SITALSLSPNMDVLATAHVDQNGVYLWV 627 (809)
Q Consensus 579 ~~I~vwd------~~~~~~---i~~~~~~~-----~v~~l~~spdg~~lat~~~d~~~i~lW~ 627 (809)
|++.|+. +-...+ ++.+++|. .|..+.|+|...+|.+++.|+ +|++|.
T Consensus 672 gtv~Vfhg~VY~Dl~qnpliVPlK~L~gH~~~~~~gVLd~~wHP~qpWLfsAGAd~-tirlfT 733 (733)
T KOG0650|consen 672 GTVIVFHGMVYNDLLQNPLIVPLKRLRGHEKTNDLGVLDTIWHPRQPWLFSAGADG-TIRLFT 733 (733)
T ss_pred CcEEEEeeeeehhhhcCCceEeeeeccCceeecccceEeecccCCCceEEecCCCc-eEEeeC
Confidence 9999984 333333 34455544 288889999999999999999 799994
No 151
>KOG4378 consensus Nuclear protein COP1 [Signal transduction mechanisms]
Probab=99.89 E-value=5.7e-22 Score=195.93 Aligned_cols=293 Identities=14% Similarity=0.226 Sum_probs=228.9
Q ss_pred EEeCCCeEEEEEeeCCeEEEEEeccC-CCcEEEEEEecCCCCEEEEEcCCCcEEEEECCCc--eeeeeeecccccceEEE
Q 003579 198 VGCSDGKIHVHNVRYDEELVTFTHSM-RGAVTALAFSSDGQPLLASGASSGVISIWNLEKR--RLQSVIREAHDNAIISL 274 (809)
Q Consensus 198 ~g~~dg~i~iwd~~~~~~~~~~~~~~-~~~V~~l~fs~dg~~~lasg~~dg~I~iwdl~~~--~~~~~~~~~h~~~V~~l 274 (809)
+++....+++||....+....+..+. .-.+.++.|.......+++.+.|..+++|.-... +....-. .....-.|+
T Consensus 7 ~aS~gd~~kl~D~s~~~~~~~~~~~t~~pg~~s~~w~~~n~lvvas~~gdk~~~~~~K~g~~~~Vp~~~k-~~gd~~~Cv 85 (673)
T KOG4378|consen 7 VASTGDKTKLSDFSDLETKSEYVHQTAEPGDFSFNWQRRNFLVVASMAGDKVMRIKEKDGKTPEVPRVRK-LTGDNAFCV 85 (673)
T ss_pred eeccCCceEEeecccccCccccccCCCCCcceeeeccccceEEEeecCCceeEEEecccCCCCccceeec-cccchHHHH
Confidence 33444579999998776665555432 2358999998776423344456788999974433 1211111 112233444
Q ss_pred EEecCCCEEEEEcCCCcEEEEEeeCCCCCceeEEeccCCCCCCeeEEEecCCCEEEEEECCCCEEEEEeeecccceecch
Q 003579 275 HFFANEPVLMSASADNSIKMWIFDTTDGDPRLLRFRSGHSAPPLCIRFYANGRHILSAGQDRAFRLFSVIQDQQSRELSQ 354 (809)
Q Consensus 275 ~~~~~~~~l~s~s~d~~i~vw~~~~~~~~~~~~~~~~~h~~~v~~i~~~~~~~~l~s~~~dg~i~~wd~~~~~~~~~~~~ 354 (809)
+......++++||..+.|+|||+... .+.+.+.+|...|+++.|.-...+|++++..|.|.+..+.++....++..
T Consensus 86 ~~~s~S~y~~sgG~~~~Vkiwdl~~k----l~hr~lkdh~stvt~v~YN~~DeyiAsvs~gGdiiih~~~t~~~tt~f~~ 161 (673)
T KOG4378|consen 86 ACASQSLYEISGGQSGCVKIWDLRAK----LIHRFLKDHQSTVTYVDYNNTDEYIASVSDGGDIIIHGTKTKQKTTTFTI 161 (673)
T ss_pred hhhhcceeeeccCcCceeeehhhHHH----HHhhhccCCcceeEEEEecCCcceeEEeccCCcEEEEecccCccccceec
Confidence 44445579999999999999999854 67788899999999999999889999999999999999887765544422
Q ss_pred hhHHHHHhhccchhhhhccCceeEEeeccccccccceeEEeecCCceEEEEEeeeeeecceeeecCCCCCCCeEEEEEcC
Q 003579 355 RHVAKRARKLKMKEEELKLKPVIAFDCAEIRERDWCNVVTCHMDTAQAYVWRLQNFVLGEHILRPCPENPTAVKACTISA 434 (809)
Q Consensus 355 ~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~v~~v~~s~ 434 (809)
+....++-+.+++
T Consensus 162 -------------------------------------------------------------------~sgqsvRll~ys~ 174 (673)
T KOG4378|consen 162 -------------------------------------------------------------------DSGQSVRLLRYSP 174 (673)
T ss_pred -------------------------------------------------------------------CCCCeEEEeeccc
Confidence 1124556788888
Q ss_pred CCCEE-EEEeCCCcEEEEECCCCceeeeeeCcccccccCccccEEEEEEcCCC-CEEEEEeCcCeEEEEECCCCceeeee
Q 003579 435 CGNFA-VLGTAGGWIERFNLQSGISRGSYLDMSERSNYAHNGEVVGVACDSTN-TLMISAGYHGDIKVWDFKGRDLKSRW 512 (809)
Q Consensus 435 ~g~~l-~~g~~~g~i~i~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~-~~l~s~~~dg~i~iwd~~~~~~~~~~ 512 (809)
..+++ .+++.+|.|.+||.+.......+. ..|..+..+++|+|.+ .++++.|.|..|.+||....+....+
T Consensus 175 skr~lL~~asd~G~VtlwDv~g~sp~~~~~-------~~HsAP~~gicfspsne~l~vsVG~Dkki~~yD~~s~~s~~~l 247 (673)
T KOG4378|consen 175 SKRFLLSIASDKGAVTLWDVQGMSPIFHAS-------EAHSAPCRGICFSPSNEALLVSVGYDKKINIYDIRSQASTDRL 247 (673)
T ss_pred ccceeeEeeccCCeEEEEeccCCCcccchh-------hhccCCcCcceecCCccceEEEecccceEEEeeccccccccee
Confidence 77665 567888999999999988877775 4899999999999976 67889999999999999999999999
Q ss_pred ecCCCeEEEEEeeCCCEEEEEeCCCeEEEEEcCCC-eEEEEEecCCCCeeeEEECCCC
Q 003579 513 EVGCSLVKIVYHRVNGLLATVADDLVIRLFDVVAL-RMVRKFEGHTDRITDFCFSEDG 569 (809)
Q Consensus 513 ~~~~~i~~~~~s~~~~~la~~~~d~~I~v~d~~~~-~~~~~~~~h~~~I~~l~fspdg 569 (809)
....+...++|+++|.+|++|...|.|..||++.. .++..+..|...|++++|-|.-
T Consensus 248 ~y~~Plstvaf~~~G~~L~aG~s~G~~i~YD~R~~k~Pv~v~sah~~sVt~vafq~s~ 305 (673)
T KOG4378|consen 248 TYSHPLSTVAFSECGTYLCAGNSKGELIAYDMRSTKAPVAVRSAHDASVTRVAFQPSP 305 (673)
T ss_pred eecCCcceeeecCCceEEEeecCCceEEEEecccCCCCceEeeecccceeEEEeeecc
Confidence 99999999999999999999999999999999864 5688999999999999997753
No 152
>KOG2445 consensus Nuclear pore complex component (sc Seh1) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=99.89 E-value=5.6e-21 Score=178.49 Aligned_cols=287 Identities=15% Similarity=0.252 Sum_probs=214.0
Q ss_pred eeecccccceEEEEEecCCCEEEEEcCCCcEEEEEeeCCCCCceeEEeccCCCCCCeeEEEec--CCCEEEEEECCCCEE
Q 003579 262 VIREAHDNAIISLHFFANEPVLMSASADNSIKMWIFDTTDGDPRLLRFRSGHSAPPLCIRFYA--NGRHILSAGQDRAFR 339 (809)
Q Consensus 262 ~~~~~h~~~V~~l~~~~~~~~l~s~s~d~~i~vw~~~~~~~~~~~~~~~~~h~~~v~~i~~~~--~~~~l~s~~~dg~i~ 339 (809)
.+..+|..-|+++.|.+-|+.+++|+.|++|+|||++..++.+.+....+.|.+.|..+.|.+ -|+.+++++.|+++.
T Consensus 7 pi~s~h~DlihdVs~D~~GRRmAtCSsDq~vkI~d~~~~s~~W~~Ts~Wrah~~Si~rV~WAhPEfGqvvA~cS~Drtv~ 86 (361)
T KOG2445|consen 7 PIDSGHKDLIHDVSFDFYGRRMATCSSDQTVKIWDSTSDSGTWSCTSSWRAHDGSIWRVVWAHPEFGQVVATCSYDRTVS 86 (361)
T ss_pred ccccCCcceeeeeeecccCceeeeccCCCcEEEEeccCCCCceEEeeeEEecCCcEEEEEecCccccceEEEEecCCcee
Confidence 444589999999999999999999999999999999888899999999999999999999976 689999999999999
Q ss_pred EEEeeecccceecchhhHHHHHhhccchhhhhccCceeEEeeccccccccceeEEeecCCceEEEEEeeeeeecceeeec
Q 003579 340 LFSVIQDQQSRELSQRHVAKRARKLKMKEEELKLKPVIAFDCAEIRERDWCNVVTCHMDTAQAYVWRLQNFVLGEHILRP 419 (809)
Q Consensus 340 ~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~ 419 (809)
+|.-....... .-+.|... ..
T Consensus 87 iWEE~~~~~~~--------------------------------------------------~~~~Wv~~---------tt 107 (361)
T KOG2445|consen 87 IWEEQEKSEEA--------------------------------------------------HGRRWVRR---------TT 107 (361)
T ss_pred eeeeccccccc--------------------------------------------------ccceeEEE---------EE
Confidence 99853111000 00111111 11
Q ss_pred CCCCCCCeEEEEEcCC--CCEEEEEeCCCcEEEEECCCCceeeeeeCccc-----ccccCccccEEEEEEcCC---CCEE
Q 003579 420 CPENPTAVKACTISAC--GNFAVLGTAGGWIERFNLQSGISRGSYLDMSE-----RSNYAHNGEVVGVACDST---NTLM 489 (809)
Q Consensus 420 ~~~~~~~v~~v~~s~~--g~~l~~g~~~g~i~i~~~~~~~~~~~~~~~~~-----~~~~~h~~~v~~l~~~~~---~~~l 489 (809)
.....+.|+.+.|.|. |-.+++++.||.+++|+............... .....+.....|+.|+|. .+++
T Consensus 108 l~DsrssV~DV~FaP~hlGLklA~~~aDG~lRIYEA~dp~nLs~W~Lq~Ei~~~~~pp~~~~~~~~CvsWn~sr~~~p~i 187 (361)
T KOG2445|consen 108 LVDSRSSVTDVKFAPKHLGLKLAAASADGILRIYEAPDPMNLSQWTLQHEIQNVIDPPGKNKQPCFCVSWNPSRMHEPLI 187 (361)
T ss_pred eecCCcceeEEEecchhcceEEEEeccCcEEEEEecCCccccccchhhhhhhhccCCcccccCcceEEeeccccccCceE
Confidence 1234588999999984 78899999999999999765543333221110 012356677889999874 3677
Q ss_pred EEEeCc-----CeEEEEECCCCc--e--eeee-ecCCCeEEEEEeeCC----CEEEEEeCCCeEEEEEcCCC--------
Q 003579 490 ISAGYH-----GDIKVWDFKGRD--L--KSRW-EVGCSLVKIVYHRVN----GLLATVADDLVIRLFDVVAL-------- 547 (809)
Q Consensus 490 ~s~~~d-----g~i~iwd~~~~~--~--~~~~-~~~~~i~~~~~s~~~----~~la~~~~d~~I~v~d~~~~-------- 547 (809)
+.|+.+ +.++||....+. . +.++ .+..+|+.++|.|+- .+||+++.|| |+||.+...
T Consensus 188 Avgs~e~a~~~~~~~Iye~~e~~rKw~kva~L~d~~dpI~di~wAPn~Gr~y~~lAvA~kDg-v~I~~v~~~~s~i~~ee 266 (361)
T KOG2445|consen 188 AVGSDEDAPHLNKVKIYEYNENGRKWLKVAELPDHTDPIRDISWAPNIGRSYHLLAVATKDG-VRIFKVKVARSAIEEEE 266 (361)
T ss_pred EEEcccCCccccceEEEEecCCcceeeeehhcCCCCCcceeeeeccccCCceeeEEEeecCc-EEEEEEeeccchhhhhc
Confidence 777765 478999876543 2 2223 344899999999963 4899999999 999998731
Q ss_pred ------------eEEEEEecCCCCeeeEEECCCCCEEEEEeCCCeEEEEEcCC---ccEEEEeeeCcceEEEEEcC
Q 003579 548 ------------RMVRKFEGHTDRITDFCFSEDGKWLLSSGMDGSLRIWDVIL---ARQIDAIHVDVSITALSLSP 608 (809)
Q Consensus 548 ------------~~~~~~~~h~~~I~~l~fspdg~~l~s~s~D~~I~vwd~~~---~~~i~~~~~~~~v~~l~~sp 608 (809)
+.+..+.+|.+.|..+.|.-.|..|++.|.||+||+|...- -+++..+.....++...|++
T Consensus 267 ~~~~~~~~~l~v~~vs~~~~H~~~VWrv~wNmtGtiLsStGdDG~VRLWkany~n~~kC~sv~~~e~~~~~~~~~~ 342 (361)
T KOG2445|consen 267 VLAPDLMTDLPVEKVSELDDHNGEVWRVRWNMTGTILSSTGDDGCVRLWKANYNNLWKCTSVLKAEGSVTKPDFSQ 342 (361)
T ss_pred ccCCCCccccceEEeeeccCCCCceEEEEEeeeeeEEeecCCCceeeehhhhhhhhheeeeEEeccCCCCCccccc
Confidence 34666889999999999999999999999999999997542 34555566555555555543
No 153
>KOG0269 consensus WD40 repeat-containing protein [Function unknown]
Probab=99.89 E-value=1.8e-22 Score=210.35 Aligned_cols=282 Identities=17% Similarity=0.250 Sum_probs=211.4
Q ss_pred CCCcEEEEEeCC-eEEEEECCe-EEEEECCee-----EEE-Eccccc---cEEEEE---EeCCEEEEEeCCCcEEEEEcC
Q 003579 56 PKKIRALASYRD-YTFAAYGNH-IAVVKRAHQ-----VAT-WSRHSA---KVNLLL---LFGEHILSIDIDGNMFIWAFK 121 (809)
Q Consensus 56 ~~~I~~la~~~~-~~~~a~g~~-i~vw~~~~~-----~~~-~~~h~~---~V~~l~---~~g~~l~s~~~dg~i~vWd~~ 121 (809)
+.++.+++..++ ...+..|.. +.+|..... ... ..+... ....|. ++.++|++++..|.|.+||+.
T Consensus 39 k~~~nAIs~nr~~~qiv~AGrs~lklyai~~~~~~~~~~~~~k~kqn~~~S~~DVkW~~~~~NlIAT~s~nG~i~vWdln 118 (839)
T KOG0269|consen 39 KAKANAISVNRDINQIVVAGRSLLKLYAINPNDFSEKCNHRFKTKQNKFYSAADVKWGQLYSNLIATCSTNGVISVWDLN 118 (839)
T ss_pred ccccceEeecCCcceeEEecccceeeEeeCcccCCcceeeecccccceeeehhhcccccchhhhheeecCCCcEEEEecC
Confidence 567778888887 334444444 666643211 111 111111 112222 368899999999999999998
Q ss_pred CCccccceeeeEEcCCccccEEEEeCCCCCCEEEEEeCCCeEEEEeCCCCceEEEEcCCCCCEEEEEEcCC-CCEEEEEe
Q 003579 122 GIEENLAPVGHVKLDDKFTPTCIMHPDTYLNKVIVGSQEGSLQLWNISTKKKLYEFKGWGSSISSCVSSPA-LDVVAVGC 200 (809)
Q Consensus 122 ~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~l~~~~~dg~i~lwd~~~~~~~~~~~~~~~~I~~l~~sp~-~~~la~g~ 200 (809)
...... .+..+.-|...+..+.||+... +.|++|+.||+|++||++..+-..++.+....|..+.|+|. +..++++.
T Consensus 119 k~~rnk-~l~~f~EH~Rs~~~ldfh~tep-~iliSGSQDg~vK~~DlR~~~S~~t~~~nSESiRDV~fsp~~~~~F~s~~ 196 (839)
T KOG0269|consen 119 KSIRNK-LLTVFNEHERSANKLDFHSTEP-NILISGSQDGTVKCWDLRSKKSKSTFRSNSESIRDVKFSPGYGNKFASIH 196 (839)
T ss_pred ccccch-hhhHhhhhccceeeeeeccCCc-cEEEecCCCceEEEEeeecccccccccccchhhhceeeccCCCceEEEec
Confidence 732111 1334455666777788998775 88999999999999999999999999999999999999994 67899999
Q ss_pred CCCeEEEEEeeCCe-EEEEEeccCCCcEEEEEEecCCCCEEEEEcCCCcEEEEECCCceeeeeeecccccceEEEEEecC
Q 003579 201 SDGKIHVHNVRYDE-ELVTFTHSMRGAVTALAFSSDGQPLLASGASSGVISIWNLEKRRLQSVIREAHDNAIISLHFFAN 279 (809)
Q Consensus 201 ~dg~i~iwd~~~~~-~~~~~~~~~~~~V~~l~fs~dg~~~lasg~~dg~I~iwdl~~~~~~~~~~~~h~~~V~~l~~~~~ 279 (809)
..|.+++||++... ....+..| .++|.|+.|+|++. +||||+.|+.|+|||..+.+...........+|.++.|-|.
T Consensus 197 dsG~lqlWDlRqp~r~~~k~~AH-~GpV~c~nwhPnr~-~lATGGRDK~vkiWd~t~~~~~~~~tInTiapv~rVkWRP~ 274 (839)
T KOG0269|consen 197 DSGYLQLWDLRQPDRCEKKLTAH-NGPVLCLNWHPNRE-WLATGGRDKMVKIWDMTDSRAKPKHTINTIAPVGRVKWRPA 274 (839)
T ss_pred CCceEEEeeccCchhHHHHhhcc-cCceEEEeecCCCc-eeeecCCCccEEEEeccCCCccceeEEeecceeeeeeeccC
Confidence 99999999998654 45555554 99999999999887 99999999999999998765443333235678999999998
Q ss_pred CC-EEEEEc--CCCcEEEEEeeCCCCCceeEEeccCCCCCCeeEEEec-CCCEEEEEECCCCEEEEEee
Q 003579 280 EP-VLMSAS--ADNSIKMWIFDTTDGDPRLLRFRSGHSAPPLCIRFYA-NGRHILSAGQDRAFRLFSVI 344 (809)
Q Consensus 280 ~~-~l~s~s--~d~~i~vw~~~~~~~~~~~~~~~~~h~~~v~~i~~~~-~~~~l~s~~~dg~i~~wd~~ 344 (809)
.+ .|++++ .|-.|+|||+..+- -+...+..|...++.++|.. |...+.+++.||++..-.++
T Consensus 275 ~~~hLAtcsmv~dtsV~VWDvrRPY---IP~~t~~eH~~~vt~i~W~~~d~~~l~s~sKD~tv~qh~~k 340 (839)
T KOG0269|consen 275 RSYHLATCSMVVDTSVHVWDVRRPY---IPYATFLEHTDSVTGIAWDSGDRINLWSCSKDGTVLQHLFK 340 (839)
T ss_pred ccchhhhhhccccceEEEEeecccc---ccceeeeccCccccceeccCCCceeeEeecCccHHHHhhhh
Confidence 76 566654 48899999997653 45667789999999999976 66788899999987654443
No 154
>KOG0321 consensus WD40 repeat-containing protein L2DTL [Function unknown]
Probab=99.89 E-value=1.2e-21 Score=199.84 Aligned_cols=318 Identities=17% Similarity=0.190 Sum_probs=217.8
Q ss_pred EEEEEec--CCCCEEEEEcCCCcEEEEECCCceee------eeeecccccceEEEEEecCCCEEEEEcCCCcEEEEEeeC
Q 003579 228 TALAFSS--DGQPLLASGASSGVISIWNLEKRRLQ------SVIREAHDNAIISLHFFANEPVLMSASADNSIKMWIFDT 299 (809)
Q Consensus 228 ~~l~fs~--dg~~~lasg~~dg~I~iwdl~~~~~~------~~~~~~h~~~V~~l~~~~~~~~l~s~s~d~~i~vw~~~~ 299 (809)
.+..|++ +.+++|+.+.++|.|.++|.+..... ... .+|.+.|..+.|.|....|++++.|.++++||+..
T Consensus 53 f~~sFs~~~n~eHiLavadE~G~i~l~dt~~~~fr~ee~~lk~~-~aH~nAifDl~wapge~~lVsasGDsT~r~Wdvk~ 131 (720)
T KOG0321|consen 53 FADSFSAAPNKEHILAVADEDGGIILFDTKSIVFRLEERQLKKP-LAHKNAIFDLKWAPGESLLVSASGDSTIRPWDVKT 131 (720)
T ss_pred ccccccCCCCccceEEEecCCCceeeecchhhhcchhhhhhccc-ccccceeEeeccCCCceeEEEccCCceeeeeeecc
Confidence 3456654 45679999999999999998765332 233 38999999999999888999999999999999887
Q ss_pred CCCCceeEEeccCCCCCCeeEEEec-CCCEEEEEECCCCEEEEEeeecccceecchhhHHHHHhhccchhhhhccCceeE
Q 003579 300 TDGDPRLLRFRSGHSAPPLCIRFYA-NGRHILSAGQDRAFRLFSVIQDQQSRELSQRHVAKRARKLKMKEEELKLKPVIA 378 (809)
Q Consensus 300 ~~~~~~~~~~~~~h~~~v~~i~~~~-~~~~l~s~~~dg~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~ 378 (809)
..... .....||...|.+++|.+ +...+++|+.||.+.+||++-..... +. .............. .|.
T Consensus 132 s~l~G--~~~~~GH~~SvkS~cf~~~n~~vF~tGgRDg~illWD~R~n~~d~-~e-----~~~~~~~~~~n~~p-tps-- 200 (720)
T KOG0321|consen 132 SRLVG--GRLNLGHTGSVKSECFMPTNPAVFCTGGRDGEILLWDCRCNGVDA-LE-----EFDNRIYGRHNTAP-TPS-- 200 (720)
T ss_pred ceeec--ceeecccccccchhhhccCCCcceeeccCCCcEEEEEEeccchhh-HH-----HHhhhhhccccCCC-CCC--
Confidence 63221 224679999999999999 56788899999999999997654111 00 00000000000000 000
Q ss_pred EeeccccccccceeEEeecCCceEEEEEeeeeeecceeeecCCCCCCCeEE---EEEcCCCCEEEEEeC-CCcEEEEECC
Q 003579 379 FDCAEIRERDWCNVVTCHMDTAQAYVWRLQNFVLGEHILRPCPENPTAVKA---CTISACGNFAVLGTA-GGWIERFNLQ 454 (809)
Q Consensus 379 ~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~v~~---v~~s~~g~~l~~g~~-~g~i~i~~~~ 454 (809)
.. -...++-| ..+...+.+ +.+..|...|++++. |+.|++||+.
T Consensus 201 -kp----------------~~kr~~k~---------------kA~s~ti~ssvTvv~fkDe~tlaSaga~D~~iKVWDLR 248 (720)
T KOG0321|consen 201 -KP----------------LKKRIRKW---------------KAASNTIFSSVTVVLFKDESTLASAGAADSTIKVWDLR 248 (720)
T ss_pred -ch----------------hhcccccc---------------ccccCceeeeeEEEEEeccceeeeccCCCcceEEEeec
Confidence 00 00001111 111223333 455567777777766 9999999998
Q ss_pred CCceeeeeeCcccccccCc---cccEEEEEEcCCCCEEEEEeCcCeEEEEECCCCc--eeeeeecC---CCeEEEEEeeC
Q 003579 455 SGISRGSYLDMSERSNYAH---NGEVVGVACDSTNTLMISAGYHGDIKVWDFKGRD--LKSRWEVG---CSLVKIVYHRV 526 (809)
Q Consensus 455 ~~~~~~~~~~~~~~~~~~h---~~~v~~l~~~~~~~~l~s~~~dg~i~iwd~~~~~--~~~~~~~~---~~i~~~~~s~~ 526 (809)
..................| ...++++..+..|.+|.+.+.|+.|++|++.+-. ++..+.+. .--..-..+|+
T Consensus 249 k~~~~~r~ep~~~~~~~t~skrs~G~~nL~lDssGt~L~AsCtD~sIy~ynm~s~s~sP~~~~sg~~~~sf~vks~lSpd 328 (720)
T KOG0321|consen 249 KNYTAYRQEPRGSDKYPTHSKRSVGQVNLILDSSGTYLFASCTDNSIYFYNMRSLSISPVAEFSGKLNSSFYVKSELSPD 328 (720)
T ss_pred ccccccccCCCcccCccCcccceeeeEEEEecCCCCeEEEEecCCcEEEEeccccCcCchhhccCcccceeeeeeecCCC
Confidence 7765544433333233334 4468889999989888888889999999987643 22222222 22234467899
Q ss_pred CCEEEEEeCCCeEEEEEcCCCeE-EEEEecCCCCeeeEEECCCC-CEEEEEeCCCeEEEEEcCCc
Q 003579 527 NGLLATVADDLVIRLFDVVALRM-VRKFEGHTDRITDFCFSEDG-KWLLSSGMDGSLRIWDVILA 589 (809)
Q Consensus 527 ~~~la~~~~d~~I~v~d~~~~~~-~~~~~~h~~~I~~l~fspdg-~~l~s~s~D~~I~vwd~~~~ 589 (809)
+.++++|+.|...++|.+.+.+. ...+.||.-.|++++|.|.. .-+++++.|..+++|++..+
T Consensus 329 ~~~l~SgSsd~~ayiw~vs~~e~~~~~l~Ght~eVt~V~w~pS~~t~v~TcSdD~~~kiW~l~~~ 393 (720)
T KOG0321|consen 329 DCSLLSGSSDEQAYIWVVSSPEAPPALLLGHTREVTTVRWLPSATTPVATCSDDFRVKIWRLSNG 393 (720)
T ss_pred CceEeccCCCcceeeeeecCccCChhhhhCcceEEEEEeeccccCCCceeeccCcceEEEeccCc
Confidence 99999999999999999987654 56678999999999998732 34777899999999999654
No 155
>KOG1538 consensus Uncharacterized conserved protein WDR10, contains WD40 repeats [General function prediction only]
Probab=99.89 E-value=1.5e-20 Score=192.15 Aligned_cols=476 Identities=14% Similarity=0.158 Sum_probs=294.2
Q ss_pred CCcEEEEEeCC--eEEEEECCeEEEEEC--CeeEEEEccccccEEEEEE--eCCEEEEEeCCCcEEEEEcCCCcccccee
Q 003579 57 KKIRALASYRD--YTFAAYGNHIAVVKR--AHQVATWSRHSAKVNLLLL--FGEHILSIDIDGNMFIWAFKGIEENLAPV 130 (809)
Q Consensus 57 ~~I~~la~~~~--~~~~a~g~~i~vw~~--~~~~~~~~~h~~~V~~l~~--~g~~l~s~~~dg~i~vWd~~~~~~~~~~~ 130 (809)
..|..+||-|| ...+|.|+.+.+||. |..+..++||++.|.++++ +|+.++||+.|..|.+|.-+-.
T Consensus 13 hci~d~afkPDGsqL~lAAg~rlliyD~ndG~llqtLKgHKDtVycVAys~dGkrFASG~aDK~VI~W~~klE------- 85 (1081)
T KOG1538|consen 13 HCINDIAFKPDGTQLILAAGSRLLVYDTSDGTLLQPLKGHKDTVYCVAYAKDGKRFASGSADKSVIIWTSKLE------- 85 (1081)
T ss_pred cchheeEECCCCceEEEecCCEEEEEeCCCcccccccccccceEEEEEEccCCceeccCCCceeEEEeccccc-------
Confidence 37899999999 456788999999996 5677889999999999998 7999999999999999975432
Q ss_pred eeEEcC-CccccEEEEeCCCCCCEEEEEeCCCeEEEEeCCCCceEEEEcCCCCCEEEEEEcCCCCEEEEEeCCCeEEEEE
Q 003579 131 GHVKLD-DKFTPTCIMHPDTYLNKVIVGSQEGSLQLWNISTKKKLYEFKGWGSSISSCVSSPALDVVAVGCSDGKIHVHN 209 (809)
Q Consensus 131 ~~~~~~-~~~~~~~~~~p~~~~~~l~~~~~dg~i~lwd~~~~~~~~~~~~~~~~I~~l~~sp~~~~la~g~~dg~i~iwd 209 (809)
..+++. ...+..+.|+|-+ ..+++++-+ ..-+|..... .+...+. ...|.+++|..||++++.|-.||+|.|-|
T Consensus 86 G~LkYSH~D~IQCMsFNP~~--h~LasCsLs-dFglWS~~qK-~V~K~ks-s~R~~~CsWtnDGqylalG~~nGTIsiRN 160 (1081)
T KOG1538|consen 86 GILKYSHNDAIQCMSFNPIT--HQLASCSLS-DFGLWSPEQK-SVSKHKS-SSRIICCSWTNDGQYLALGMFNGTISIRN 160 (1081)
T ss_pred ceeeeccCCeeeEeecCchH--HHhhhcchh-hccccChhhh-hHHhhhh-heeEEEeeecCCCcEEEEeccCceEEeec
Confidence 234443 4455556689988 678887654 4778986443 3322222 56789999999999999999999999997
Q ss_pred eeCCeEEEEEe--ccCCCcEEEEEEecCCC----CEEEEEcCCCcEEEEECCCceeeeeeecccccceEEEEEecCCCEE
Q 003579 210 VRYDEELVTFT--HSMRGAVTALAFSSDGQ----PLLASGASSGVISIWNLEKRRLQSVIREAHDNAIISLHFFANEPVL 283 (809)
Q Consensus 210 ~~~~~~~~~~~--~~~~~~V~~l~fs~dg~----~~lasg~~dg~I~iwdl~~~~~~~~~~~~h~~~V~~l~~~~~~~~l 283 (809)
- +++....+. ++...+|.+++|+|... .++++.....++.++.+. |+.+..-+ .-.-...|+.+.++|.++
T Consensus 161 k-~gEek~~I~Rpgg~Nspiwsi~~~p~sg~G~~di~aV~DW~qTLSFy~Ls-G~~Igk~r-~L~FdP~CisYf~NGEy~ 237 (1081)
T KOG1538|consen 161 K-NGEEKVKIERPGGSNSPIWSICWNPSSGEGRNDILAVADWGQTLSFYQLS-GKQIGKDR-ALNFDPCCISYFTNGEYI 237 (1081)
T ss_pred C-CCCcceEEeCCCCCCCCceEEEecCCCCCCccceEEEEeccceeEEEEec-ceeecccc-cCCCCchhheeccCCcEE
Confidence 4 455544444 34467999999998632 478888888899999885 44444333 344456899999999999
Q ss_pred EEEcCCCcEEEEEeeCCCCCceeEEeccCCCCCCeeEEEecCCCEEEEEECCCCEEEEEeeecccceecchhhHHHHHhh
Q 003579 284 MSASADNSIKMWIFDTTDGDPRLLRFRSGHSAPPLCIRFYANGRHILSAGQDRAFRLFSVIQDQQSRELSQRHVAKRARK 363 (809)
Q Consensus 284 ~s~s~d~~i~vw~~~~~~~~~~~~~~~~~h~~~v~~i~~~~~~~~l~s~~~dg~i~~wd~~~~~~~~~~~~~~~~~~~~~ 363 (809)
+.||.|+.+++|--+ ...+.+.......|..++..|+++.++.|..||+|..|++.....-.........++. -
T Consensus 238 LiGGsdk~L~~fTR~-----GvrLGTvg~~D~WIWtV~~~PNsQ~v~~GCqDGTiACyNl~fSTVH~ly~~RYA~R~s-M 311 (1081)
T KOG1538|consen 238 LLGGSDKQLSLFTRD-----GVRLGTVGEQDSWIWTVQAKPNSQYVVVGCQDGTIACYNLIFSTVHGLYKDRYAYRDS-M 311 (1081)
T ss_pred EEccCCCceEEEeec-----CeEEeeccccceeEEEEEEccCCceEEEEEccCeeehhhhHHhHhhhhhHHhhhhhhh-h
Confidence 999999999999432 2455555567788999999999999999999999999988544321111000000000 0
Q ss_pred ccchhhhhccCceeEEeecccc--ccccceeEEeecCCceEEEEEeeeeeecceeeecCCCCCCCeEEEEEcCCCCEEEE
Q 003579 364 LKMKEEELKLKPVIAFDCAEIR--ERDWCNVVTCHMDTAQAYVWRLQNFVLGEHILRPCPENPTAVKACTISACGNFAVL 441 (809)
Q Consensus 364 ~~~~~~~~~~~~i~~~~~~~~~--~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~v~~v~~s~~g~~l~~ 441 (809)
-.+-...+....-..+.+...- -.-+.+-++. .-...+.+|...+.............-.....+--+--+++.+++
T Consensus 312 tDVivQhLi~~qkvrIkC~DLVkKiaiYrnrLAV-QLpeki~iYel~se~~~~mhY~v~ekI~kkf~cSLlVVc~~HiVl 390 (1081)
T KOG1538|consen 312 TDVIVQHLITEQKVRIKCKDLVKKIAIYRNRLAV-QLPEKILIYELYSEDLSDMHYRVKEKIIKKFECSLLVVCANHIVL 390 (1081)
T ss_pred HHHHHHHHhhcceeeeeHHHHHHHHHhhhhhhee-cccceEEEEeccccccccchhHHHHHHHhhccceEEEEEcCeEEE
Confidence 0000000000000000000000 0000000000 011233344333221110000000000011111112224555554
Q ss_pred EeCCCcEEEEECCCCceeeeeeCcccccccCccccEEEEEE--cC-CCCEEEEEeCcCeEEEEECCCCceeeeeecCCCe
Q 003579 442 GTAGGWIERFNLQSGISRGSYLDMSERSNYAHNGEVVGVAC--DS-TNTLMISAGYHGDIKVWDFKGRDLKSRWEVGCSL 518 (809)
Q Consensus 442 g~~~g~i~i~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~--~~-~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~i 518 (809)
+ .+..+..+|...-..+.- ...+-|.-+.+ -| ...-++.|-.+|.|.-.=+++.-++-.......|
T Consensus 391 C-qekrLqClDF~Gvk~ReW----------~M~S~iRYikV~GGP~gREgL~vGlknGqV~kiF~dN~~PiLl~~~~tAv 459 (1081)
T KOG1538|consen 391 C-QEKRLQCLDFSGVKEREW----------QMESLIRYIKVIGGPPGREGLLVGLKNGQVLKIFVDNLFPILLLKQATAV 459 (1081)
T ss_pred E-cccceeeecccchhhhhh----------hHHHHHHhhhhhcCCCCcceeEEEecCCcEEEEEecCCchhheeccccee
Confidence 3 455666666543322211 01111222221 12 2345777777776643334444444444555789
Q ss_pred EEEEEeeCCCEEEEEeCCCeEEEEEcCCCeEEEEEecCCCCeeeEEECCCC
Q 003579 519 VKIVYHRVNGLLATVADDLVIRLFDVVALRMVRKFEGHTDRITDFCFSEDG 569 (809)
Q Consensus 519 ~~~~~s~~~~~la~~~~d~~I~v~d~~~~~~~~~~~~h~~~I~~l~fspdg 569 (809)
.|+..+...+.||+..+.++..++|+.+++.+.+- -.+++++|....
T Consensus 460 rClDINA~R~kLAvVDD~~~c~v~DI~t~elL~QE----pg~nSV~wNT~~ 506 (1081)
T KOG1538|consen 460 RCLDINASRKKLAVVDDNDTCLVYDIDTKELLFQE----PGANSVAWNTQC 506 (1081)
T ss_pred EEeeccCCcceEEEEccCCeEEEEEccCCceEeec----CCCceEEeeccc
Confidence 99999999999999999999999999999877543 347788887644
No 156
>KOG2445 consensus Nuclear pore complex component (sc Seh1) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=99.89 E-value=1.1e-20 Score=176.67 Aligned_cols=254 Identities=15% Similarity=0.210 Sum_probs=199.9
Q ss_pred EccccccEEEEEEe--CCEEEEEeCCCcEEEEEcCCCccccceeeeEEcCCccccEEEEeCCCCCCEEEEEeCCCeEEEE
Q 003579 89 WSRHSAKVNLLLLF--GEHILSIDIDGNMFIWAFKGIEENLAPVGHVKLDDKFTPTCIMHPDTYLNKVIVGSQEGSLQLW 166 (809)
Q Consensus 89 ~~~h~~~V~~l~~~--g~~l~s~~~dg~i~vWd~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~l~~~~~dg~i~lw 166 (809)
-.+|.+-|+++.|| |+++++|+.|++|+|||..............+.|.+.+..+.+.++.|.+.+++++.|+++.||
T Consensus 9 ~s~h~DlihdVs~D~~GRRmAtCSsDq~vkI~d~~~~s~~W~~Ts~Wrah~~Si~rV~WAhPEfGqvvA~cS~Drtv~iW 88 (361)
T KOG2445|consen 9 DSGHKDLIHDVSFDFYGRRMATCSSDQTVKIWDSTSDSGTWSCTSSWRAHDGSIWRVVWAHPEFGQVVATCSYDRTVSIW 88 (361)
T ss_pred ccCCcceeeeeeecccCceeeeccCCCcEEEEeccCCCCceEEeeeEEecCCcEEEEEecCccccceEEEEecCCceeee
Confidence 35799999999984 9999999999999999986665554556677888888889999888888999999999999999
Q ss_pred eCCC---------CceEEEEcCCCCCEEEEEEcCC--CCEEEEEeCCCeEEEEEeeCCeEEEEEe------------ccC
Q 003579 167 NIST---------KKKLYEFKGWGSSISSCVSSPA--LDVVAVGCSDGKIHVHNVRYDEELVTFT------------HSM 223 (809)
Q Consensus 167 d~~~---------~~~~~~~~~~~~~I~~l~~sp~--~~~la~g~~dg~i~iwd~~~~~~~~~~~------------~~~ 223 (809)
.=.. -....++....+.|+.+.|.|. |-.+|+++.||.+|||+...--.+.... ..+
T Consensus 89 EE~~~~~~~~~~~Wv~~ttl~DsrssV~DV~FaP~hlGLklA~~~aDG~lRIYEA~dp~nLs~W~Lq~Ei~~~~~pp~~~ 168 (361)
T KOG2445|consen 89 EEQEKSEEAHGRRWVRRTTLVDSRSSVTDVKFAPKHLGLKLAAASADGILRIYEAPDPMNLSQWTLQHEIQNVIDPPGKN 168 (361)
T ss_pred eecccccccccceeEEEEEeecCCcceeEEEecchhcceEEEEeccCcEEEEEecCCccccccchhhhhhhhccCCcccc
Confidence 7421 1234556777899999999995 6689999999999999876443322221 112
Q ss_pred CCcEEEEEEecCC--CCEEEEEcCC-----CcEEEEECCCc----eeeeeeecccccceEEEEEecCC----CEEEEEcC
Q 003579 224 RGAVTALAFSSDG--QPLLASGASS-----GVISIWNLEKR----RLQSVIREAHDNAIISLHFFANE----PVLMSASA 288 (809)
Q Consensus 224 ~~~V~~l~fs~dg--~~~lasg~~d-----g~I~iwdl~~~----~~~~~~~~~h~~~V~~l~~~~~~----~~l~s~s~ 288 (809)
..+..|+.|+|.. .+++|+|+.+ +.+.||....+ ..+..+. +|..+|+.++|.|+- .+|++++.
T Consensus 169 ~~~~~CvsWn~sr~~~p~iAvgs~e~a~~~~~~~Iye~~e~~rKw~kva~L~-d~~dpI~di~wAPn~Gr~y~~lAvA~k 247 (361)
T KOG2445|consen 169 KQPCFCVSWNPSRMHEPLIAVGSDEDAPHLNKVKIYEYNENGRKWLKVAELP-DHTDPIRDISWAPNIGRSYHLLAVATK 247 (361)
T ss_pred cCcceEEeeccccccCceEEEEcccCCccccceEEEEecCCcceeeeehhcC-CCCCcceeeeeccccCCceeeEEEeec
Confidence 4578899999752 3588888865 57888876544 3445555 899999999999963 38999999
Q ss_pred CCcEEEEEeeCC----------------CCCceeEEeccCCCCCCeeEEEecCCCEEEEEECCCCEEEEEee
Q 003579 289 DNSIKMWIFDTT----------------DGDPRLLRFRSGHSAPPLCIRFYANGRHILSAGQDRAFRLFSVI 344 (809)
Q Consensus 289 d~~i~vw~~~~~----------------~~~~~~~~~~~~h~~~v~~i~~~~~~~~l~s~~~dg~i~~wd~~ 344 (809)
|| |+||.+... .-....+..+.+|.++|..++|+-.|..|.+.|.||.+|+|...
T Consensus 248 Dg-v~I~~v~~~~s~i~~ee~~~~~~~~~l~v~~vs~~~~H~~~VWrv~wNmtGtiLsStGdDG~VRLWkan 318 (361)
T KOG2445|consen 248 DG-VRIFKVKVARSAIEEEEVLAPDLMTDLPVEKVSELDDHNGEVWRVRWNMTGTILSSTGDDGCVRLWKAN 318 (361)
T ss_pred Cc-EEEEEEeeccchhhhhcccCCCCccccceEEeeeccCCCCceEEEEEeeeeeEEeecCCCceeeehhhh
Confidence 99 999998731 01123455678999999999999999999999999999999753
No 157
>KOG0267 consensus Microtubule severing protein katanin p80 subunit B (contains WD40 repeats) [Cell cycle control, cell division, chromosome partitioning]
Probab=99.88 E-value=4.9e-23 Score=212.74 Aligned_cols=250 Identities=17% Similarity=0.249 Sum_probs=216.7
Q ss_pred CeEEEEEEcCCeEEEEEcCccEEEEecCCCCCCcEEEEEeCCeEEEEECCe---EEEEECCeeEEE--EccccccEEEEE
Q 003579 26 TENFVTVSVGKAFHIYNCAKLNLVLVGPQLPKKIRALASYRDYTFAAYGNH---IAVVKRAHQVAT--WSRHSAKVNLLL 100 (809)
Q Consensus 26 ~~~~i~~~~~~~i~iwd~~~~~~~~~~~~~~~~I~~la~~~~~~~~a~g~~---i~vw~~~~~~~~--~~~h~~~V~~l~ 100 (809)
..+...+...-.+++||.+.. ..|...+.|+..-...+++++|+. +-+|..++.... +.+|..+|.+|.
T Consensus 4 ~~~~m~~~~~t~Lr~~~~~~~------~~hsaav~~lk~~~s~r~~~~Gg~~~k~~L~~i~kp~~i~S~~~hespIeSl~ 77 (825)
T KOG0267|consen 4 MEFLMKTKRATKLRVWDTREF------VAHSAAVGCLKIRKSSRSLVTGGEDEKVNLWAIGKPNAITSLTGHESPIESLT 77 (825)
T ss_pred ccccceeeeeeccccccchhh------hhhhhhhceeeeeccceeeccCCCceeeccccccCCchhheeeccCCcceeee
Confidence 345566666677888887652 236777788887666888888865 668888776444 899999999999
Q ss_pred Ee--CCEEEEEeCCCcEEEEEcCCCccccceeeeEEcCCccccEEEEeCCCCCCEEEEEeCCCeEEEEeCCCCceEEEEc
Q 003579 101 LF--GEHILSIDIDGNMFIWAFKGIEENLAPVGHVKLDDKFTPTCIMHPDTYLNKVIVGSQEGSLQLWNISTKKKLYEFK 178 (809)
Q Consensus 101 ~~--g~~l~s~~~dg~i~vWd~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~l~~~~~dg~i~lwd~~~~~~~~~~~ 178 (809)
++ ...|++|+.+|+|++||+..... ++++..+......+.|||-+ .+.+.|+.|+.+.+||++...+.+.+.
T Consensus 78 f~~~E~LlaagsasgtiK~wDleeAk~----vrtLtgh~~~~~sv~f~P~~--~~~a~gStdtd~~iwD~Rk~Gc~~~~~ 151 (825)
T KOG0267|consen 78 FDTSERLLAAGSASGTIKVWDLEEAKI----VRTLTGHLLNITSVDFHPYG--EFFASGSTDTDLKIWDIRKKGCSHTYK 151 (825)
T ss_pred cCcchhhhcccccCCceeeeehhhhhh----hhhhhccccCcceeeeccce--EEeccccccccceehhhhccCceeeec
Confidence 84 66788899999999999998887 77888888888888999999 778999999999999999899999999
Q ss_pred CCCCCEEEEEEcCCCCEEEEEeCCCeEEEEEeeCCeEEEEEeccCCCcEEEEEEecCCCCEEEEEcCCCcEEEEECCCce
Q 003579 179 GWGSSISSCVSSPALDVVAVGCSDGKIHVHNVRYDEELVTFTHSMRGAVTALAFSSDGQPLLASGASSGVISIWNLEKRR 258 (809)
Q Consensus 179 ~~~~~I~~l~~sp~~~~la~g~~dg~i~iwd~~~~~~~~~~~~~~~~~V~~l~fs~dg~~~lasg~~dg~I~iwdl~~~~ 258 (809)
+|...|.+++|+|+|+++++|+.|.+++|||+..|+.+..|..| .+.+.++.|+|..- ++++|+.|+++++||+++-.
T Consensus 152 s~~~vv~~l~lsP~Gr~v~~g~ed~tvki~d~~agk~~~ef~~~-e~~v~sle~hp~e~-Lla~Gs~d~tv~f~dletfe 229 (825)
T KOG0267|consen 152 SHTRVVDVLRLSPDGRWVASGGEDNTVKIWDLTAGKLSKEFKSH-EGKVQSLEFHPLEV-LLAPGSSDRTVRFWDLETFE 229 (825)
T ss_pred CCcceeEEEeecCCCceeeccCCcceeeeecccccccccccccc-cccccccccCchhh-hhccCCCCceeeeeccceeE
Confidence 99999999999999999999999999999999999999999876 89999999999876 99999999999999999999
Q ss_pred eeeeeecccccceEEEEEecCCCEEEEEcCCC
Q 003579 259 LQSVIREAHDNAIISLHFFANEPVLMSASADN 290 (809)
Q Consensus 259 ~~~~~~~~h~~~V~~l~~~~~~~~l~s~s~d~ 290 (809)
.+.... ....+|.++.|.|++..+.+|..+.
T Consensus 230 ~I~s~~-~~~~~v~~~~fn~~~~~~~~G~q~s 260 (825)
T KOG0267|consen 230 VISSGK-PETDGVRSLAFNPDGKIVLSGEQIS 260 (825)
T ss_pred EeeccC-CccCCceeeeecCCceeeecCchhh
Confidence 888887 5688999999999999888876543
No 158
>KOG4378 consensus Nuclear protein COP1 [Signal transduction mechanisms]
Probab=99.88 E-value=3.4e-21 Score=190.54 Aligned_cols=271 Identities=17% Similarity=0.248 Sum_probs=208.4
Q ss_pred eEEEEECCeEEEEECCeeEEE--Eccccc--cEEEEEEe-CCEEEEEeC--CCcEEEEEcCCCccccceeeeEEcCCccc
Q 003579 68 YTFAAYGNHIAVVKRAHQVAT--WSRHSA--KVNLLLLF-GEHILSIDI--DGNMFIWAFKGIEENLAPVGHVKLDDKFT 140 (809)
Q Consensus 68 ~~~~a~g~~i~vw~~~~~~~~--~~~h~~--~V~~l~~~-g~~l~s~~~--dg~i~vWd~~~~~~~~~~~~~~~~~~~~~ 140 (809)
..++.+|+.+.+||....... +..|+. .+.++.|. .+.|++++. |..|++|.-.........++.......+.
T Consensus 5 l~~aS~gd~~kl~D~s~~~~~~~~~~~t~~pg~~s~~w~~~n~lvvas~~gdk~~~~~~K~g~~~~Vp~~~k~~gd~~~C 84 (673)
T KOG4378|consen 5 LHVASTGDKTKLSDFSDLETKSEYVHQTAEPGDFSFNWQRRNFLVVASMAGDKVMRIKEKDGKTPEVPRVRKLTGDNAFC 84 (673)
T ss_pred eeeeccCCceEEeecccccCccccccCCCCCcceeeeccccceEEEeecCCceeEEEecccCCCCccceeeccccchHHH
Confidence 344455667999986433211 333322 37778775 344666554 66789997665522112233333332221
Q ss_pred cEEEEeCCCCCCEEEEEeCCCeEEEEeCCCCceEEEEcCCCCCEEEEEEcCCCCEEEEEeCCCeEEEEEeeCCeEEEEEe
Q 003579 141 PTCIMHPDTYLNKVIVGSQEGSLQLWNISTKKKLYEFKGWGSSISSCVSSPALDVVAVGCSDGKIHVHNVRYDEELVTFT 220 (809)
Q Consensus 141 ~~~~~~p~~~~~~l~~~~~dg~i~lwd~~~~~~~~~~~~~~~~I~~l~~sp~~~~la~g~~dg~i~iwd~~~~~~~~~~~ 220 (809)
+.+.... .++++|+..+.|.|||++...+.+.+++|...|+++.+.-...+||+++..|.|.|+++.++.....|.
T Consensus 85 --v~~~s~S--~y~~sgG~~~~Vkiwdl~~kl~hr~lkdh~stvt~v~YN~~DeyiAsvs~gGdiiih~~~t~~~tt~f~ 160 (673)
T KOG4378|consen 85 --VACASQS--LYEISGGQSGCVKIWDLRAKLIHRFLKDHQSTVTYVDYNNTDEYIASVSDGGDIIIHGTKTKQKTTTFT 160 (673)
T ss_pred --Hhhhhcc--eeeeccCcCceeeehhhHHHHHhhhccCCcceeEEEEecCCcceeEEeccCCcEEEEecccCcccccee
Confidence 1122222 579999999999999999777777889999999999999999999999999999999999999999998
Q ss_pred ccCCCcEEEEEEecCCCCEEEEEcCCCcEEEEECCCceeeeeeecccccceEEEEEecCC-CEEEEEcCCCcEEEEEeeC
Q 003579 221 HSMRGAVTALAFSSDGQPLLASGASSGVISIWNLEKRRLQSVIREAHDNAIISLHFFANE-PVLMSASADNSIKMWIFDT 299 (809)
Q Consensus 221 ~~~~~~V~~l~fs~dg~~~lasg~~dg~I~iwdl~~~~~~~~~~~~h~~~V~~l~~~~~~-~~l~s~s~d~~i~vw~~~~ 299 (809)
.+....|.-+.|++..+++|.+++.+|.|.+||.............|..+...++|+|.+ .+|++.|.|..|.+||...
T Consensus 161 ~~sgqsvRll~ys~skr~lL~~asd~G~VtlwDv~g~sp~~~~~~~HsAP~~gicfspsne~l~vsVG~Dkki~~yD~~s 240 (673)
T KOG4378|consen 161 IDSGQSVRLLRYSPSKRFLLSIASDKGAVTLWDVQGMSPIFHASEAHSAPCRGICFSPSNEALLVSVGYDKKINIYDIRS 240 (673)
T ss_pred cCCCCeEEEeecccccceeeEeeccCCeEEEEeccCCCcccchhhhccCCcCcceecCCccceEEEecccceEEEeeccc
Confidence 875667789999999998999999999999999999888888878999999999999965 4888999999999998875
Q ss_pred CCCCceeEEeccCCCCCCeeEEEecCCCEEEEEECCCCEEEEEeeecc
Q 003579 300 TDGDPRLLRFRSGHSAPPLCIRFYANGRHILSAGQDRAFRLFSVIQDQ 347 (809)
Q Consensus 300 ~~~~~~~~~~~~~h~~~v~~i~~~~~~~~l~s~~~dg~i~~wd~~~~~ 347 (809)
.....++ ....|...++|.++|.+|+.|...|.|..||++..+
T Consensus 241 ~~s~~~l-----~y~~Plstvaf~~~G~~L~aG~s~G~~i~YD~R~~k 283 (673)
T KOG4378|consen 241 QASTDRL-----TYSHPLSTVAFSECGTYLCAGNSKGELIAYDMRSTK 283 (673)
T ss_pred cccccee-----eecCCcceeeecCCceEEEeecCCceEEEEecccCC
Confidence 4322222 456789999999999999999999999999997654
No 159
>KOG4497 consensus Uncharacterized conserved protein WDR8, contains WD repeats [General function prediction only]
Probab=99.88 E-value=4.2e-21 Score=180.56 Aligned_cols=383 Identities=14% Similarity=0.164 Sum_probs=265.9
Q ss_pred EEEEeCCCCCCEEEEEeCCCeEEEEeCCCCceEEEEcCCCCCEEEEEEcCCCCEE-EEEeCCCeEEEEEeeCCeEEEEEe
Q 003579 142 TCIMHPDTYLNKVIVGSQEGSLQLWNISTKKKLYEFKGWGSSISSCVSSPALDVV-AVGCSDGKIHVHNVRYDEELVTFT 220 (809)
Q Consensus 142 ~~~~~p~~~~~~l~~~~~dg~i~lwd~~~~~~~~~~~~~~~~I~~l~~sp~~~~l-a~g~~dg~i~iwd~~~~~~~~~~~ 220 (809)
-|.|+|++ +++++.+.- .+.+-|..+.+..+.|.. -..|.-+.|..|.-++ .+.+.++.|.+|++...+-...+.
T Consensus 13 ~c~fSp~g--~yiAs~~~y-rlviRd~~tlq~~qlf~c-ldki~yieW~ads~~ilC~~yk~~~vqvwsl~Qpew~ckId 88 (447)
T KOG4497|consen 13 FCSFSPCG--NYIASLSRY-RLVIRDSETLQLHQLFLC-LDKIVYIEWKADSCHILCVAYKDPKVQVWSLVQPEWYCKID 88 (447)
T ss_pred ceeECCCC--Ceeeeeeee-EEEEeccchhhHHHHHHH-HHHhhheeeeccceeeeeeeeccceEEEEEeecceeEEEec
Confidence 57899999 899999765 788899888777666554 4567888998887654 456788999999999998888888
Q ss_pred ccCCCcEEEEEEecCCCCEEEEEcCCCcEEEEECCCceeeeeeecccccceEEEEEecCCCEEEEEcCCCcEEEEEeeCC
Q 003579 221 HSMRGAVTALAFSSDGQPLLASGASSGVISIWNLEKRRLQSVIREAHDNAIISLHFFANEPVLMSASADNSIKMWIFDTT 300 (809)
Q Consensus 221 ~~~~~~V~~l~fs~dg~~~lasg~~dg~I~iwdl~~~~~~~~~~~~h~~~V~~l~~~~~~~~l~s~s~d~~i~vw~~~~~ 300 (809)
.+ ..++.+++|||||+++|.+..-+-.|.+|.+.+.+....-. ....+..++|.|||++.+.++.-.......+..
T Consensus 89 eg-~agls~~~WSPdgrhiL~tseF~lriTVWSL~t~~~~~~~~--pK~~~kg~~f~~dg~f~ai~sRrDCkdyv~i~~- 164 (447)
T KOG4497|consen 89 EG-QAGLSSISWSPDGRHILLTSEFDLRITVWSLNTQKGYLLPH--PKTNVKGYAFHPDGQFCAILSRRDCKDYVQISS- 164 (447)
T ss_pred cC-CCcceeeeECCCcceEeeeecceeEEEEEEeccceeEEecc--cccCceeEEECCCCceeeeeecccHHHHHHHHh-
Confidence 87 78899999999998899998899999999999887655433 234568999999999888877532111111110
Q ss_pred CCCceeEEeccCCCCCCeeEEEecCCCEEEEEECCCCEEEEEeeecccceecchhhHHHHHhhccchhhhhccCceeEEe
Q 003579 301 DGDPRLLRFRSGHSAPPLCIRFYANGRHILSAGQDRAFRLFSVIQDQQSRELSQRHVAKRARKLKMKEEELKLKPVIAFD 380 (809)
Q Consensus 301 ~~~~~~~~~~~~h~~~v~~i~~~~~~~~l~s~~~dg~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~ 380 (809)
-..+.+++.+.-..-..+.+.|+|||..|++ ||..-.-
T Consensus 165 c~~W~ll~~f~~dT~DltgieWsPdg~~laV---------wd~~Ley--------------------------------- 202 (447)
T KOG4497|consen 165 CKAWILLKEFKLDTIDLTGIEWSPDGNWLAV---------WDNVLEY--------------------------------- 202 (447)
T ss_pred hHHHHHHHhcCCCcccccCceECCCCcEEEE---------ecchhhh---------------------------------
Confidence 1123455555556667889999999987664 4421100
Q ss_pred eccccccccceeEEeecCCceEEEEEeeeeeecceeeecCCCCCCCeEEEEEcCCCCEEEEEeCCCcEEEEECCCCceee
Q 003579 381 CAEIRERDWCNVVTCHMDTAQAYVWRLQNFVLGEHILRPCPENPTAVKACTISACGNFAVLGTAGGWIERFNLQSGISRG 460 (809)
Q Consensus 381 ~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~v~~v~~s~~g~~l~~g~~~g~i~i~~~~~~~~~~ 460 (809)
.++.| .-.-.+..++++|+++++++|+.|+.+++.|--+-+...
T Consensus 203 --------------------kv~aY----------------e~~lG~k~v~wsP~~qflavGsyD~~lrvlnh~tWk~f~ 246 (447)
T KOG4497|consen 203 --------------------KVYAY----------------ERGLGLKFVEWSPCNQFLAVGSYDQMLRVLNHFTWKPFG 246 (447)
T ss_pred --------------------eeeee----------------eeccceeEEEeccccceEEeeccchhhhhhceeeeeehh
Confidence 00000 001568899999999999999999999998876655555
Q ss_pred eeeCccccc-----------ccCccccEEEEEEcCCCCEEEEEeCcCeEEEEECC--------CCceeeeee-------c
Q 003579 461 SYLDMSERS-----------NYAHNGEVVGVACDSTNTLMISAGYHGDIKVWDFK--------GRDLKSRWE-------V 514 (809)
Q Consensus 461 ~~~~~~~~~-----------~~~h~~~v~~l~~~~~~~~l~s~~~dg~i~iwd~~--------~~~~~~~~~-------~ 514 (809)
.+....... ...-.-...++.|.|.+ -...+|..+ ....+..++ .
T Consensus 247 eflhl~s~~dp~~~~~~ke~~~~~ql~~~cLsf~p~~---------~~a~~~~~se~~YE~~~~pv~~~~lkp~tD~pnP 317 (447)
T KOG4497|consen 247 EFLHLCSYHDPTLHLLEKETFSIVQLLHHCLSFTPTD---------LEAHIWEESETIYEQQMTPVKVHKLKPPTDFPNP 317 (447)
T ss_pred hhccchhccCchhhhhhhhhcchhhhcccccccCCCc---------cccCccccchhhhhhhhcceeeecccCCCCCCCc
Confidence 442111000 00000111233343322 111222211 011111111 2
Q ss_pred CCCeEEEEEeeCCCEEEEEeCC--CeEEEEEcCCCeEEEEEecCCCCeeeEEECCCCCEEEEEeCCCeEEEEEcCCccEE
Q 003579 515 GCSLVKIVYHRVNGLLATVADD--LVIRLFDVVALRMVRKFEGHTDRITDFCFSEDGKWLLSSGMDGSLRIWDVILARQI 592 (809)
Q Consensus 515 ~~~i~~~~~s~~~~~la~~~~d--~~I~v~d~~~~~~~~~~~~h~~~I~~l~fspdg~~l~s~s~D~~I~vwd~~~~~~i 592 (809)
...+..++|++|+.++|+-.+. ..+.+||++..++...+. ...+|....|.|....|+.+.....+++|...-...+
T Consensus 318 k~g~g~lafs~Ds~y~aTrnd~~PnalW~Wdlq~l~l~avLi-Qk~piraf~WdP~~prL~vctg~srLY~W~psg~~~V 396 (447)
T KOG4497|consen 318 KCGAGKLAFSCDSTYAATRNDKYPNALWLWDLQNLKLHAVLI-QKHPIRAFEWDPGRPRLVVCTGKSRLYFWAPSGPRVV 396 (447)
T ss_pred ccccceeeecCCceEEeeecCCCCceEEEEechhhhhhhhhh-hccceeEEEeCCCCceEEEEcCCceEEEEcCCCceEE
Confidence 2678889999999999987664 689999999877655554 5578999999998888887777778999997765555
Q ss_pred EEeeeCcceEEEEEcCCCCeEEEEEeCC
Q 003579 593 DAIHVDVSITALSLSPNMDVLATAHVDQ 620 (809)
Q Consensus 593 ~~~~~~~~v~~l~~spdg~~lat~~~d~ 620 (809)
..-...-.|..+.|..+|++++..+.|.
T Consensus 397 ~vP~~GF~i~~l~W~~~g~~i~l~~kDa 424 (447)
T KOG4497|consen 397 GVPKKGFNIQKLQWLQPGEFIVLCGKDA 424 (447)
T ss_pred ecCCCCceeeeEEecCCCcEEEEEcCCc
Confidence 5554455699999999999999999886
No 160
>KOG0267 consensus Microtubule severing protein katanin p80 subunit B (contains WD40 repeats) [Cell cycle control, cell division, chromosome partitioning]
Probab=99.88 E-value=7.9e-23 Score=211.23 Aligned_cols=254 Identities=15% Similarity=0.317 Sum_probs=218.2
Q ss_pred CEEEEEcCCCcEEEEEeeCCCCCceeEEeccCCCCCCeeEEEecCCCEEEEEECCCCEEEEEeeecccceecchhhHHHH
Q 003579 281 PVLMSASADNSIKMWIFDTTDGDPRLLRFRSGHSAPPLCIRFYANGRHILSAGQDRAFRLFSVIQDQQSRELSQRHVAKR 360 (809)
Q Consensus 281 ~~l~s~s~d~~i~vw~~~~~~~~~~~~~~~~~h~~~v~~i~~~~~~~~l~s~~~dg~i~~wd~~~~~~~~~~~~~~~~~~ 360 (809)
..++....+-.+++|+... ...|...+.++..-..++.+++|+.|..+-+|.+........
T Consensus 5 ~~~m~~~~~t~Lr~~~~~~----------~~~hsaav~~lk~~~s~r~~~~Gg~~~k~~L~~i~kp~~i~S--------- 65 (825)
T KOG0267|consen 5 EFLMKTKRATKLRVWDTRE----------FVAHSAAVGCLKIRKSSRSLVTGGEDEKVNLWAIGKPNAITS--------- 65 (825)
T ss_pred cccceeeeeeccccccchh----------hhhhhhhhceeeeeccceeeccCCCceeeccccccCCchhhe---------
Confidence 3445555556677885532 236888888888866888999999999999998654322111
Q ss_pred HhhccchhhhhccCceeEEeeccccccccceeEEeecCCceEEEEEeeeeeecceeeecCCCCCCCeEEEEEcCCCCEEE
Q 003579 361 ARKLKMKEEELKLKPVIAFDCAEIRERDWCNVVTCHMDTAQAYVWRLQNFVLGEHILRPCPENPTAVKACTISACGNFAV 440 (809)
Q Consensus 361 ~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~v~~v~~s~~g~~l~ 440 (809)
..+|..+|.++.|++....++
T Consensus 66 -----------------------------------------------------------~~~hespIeSl~f~~~E~Lla 86 (825)
T KOG0267|consen 66 -----------------------------------------------------------LTGHESPIESLTFDTSERLLA 86 (825)
T ss_pred -----------------------------------------------------------eeccCCcceeeecCcchhhhc
Confidence 125679999999999999999
Q ss_pred EEeCCCcEEEEECCCCceeeeeeCcccccccCccccEEEEEEcCCCCEEEEEeCcCeEEEEECCCCceeeeeecC-CCeE
Q 003579 441 LGTAGGWIERFNLQSGISRGSYLDMSERSNYAHNGEVVGVACDSTNTLMISAGYHGDIKVWDFKGRDLKSRWEVG-CSLV 519 (809)
Q Consensus 441 ~g~~~g~i~i~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~-~~i~ 519 (809)
.|+.+|.|++||+..++....+. +|...+..+.|+|-+.+.++++.|+.+++||.+...+.+.+..+ ..+.
T Consensus 87 agsasgtiK~wDleeAk~vrtLt--------gh~~~~~sv~f~P~~~~~a~gStdtd~~iwD~Rk~Gc~~~~~s~~~vv~ 158 (825)
T KOG0267|consen 87 AGSASGTIKVWDLEEAKIVRTLT--------GHLLNITSVDFHPYGEFFASGSTDTDLKIWDIRKKGCSHTYKSHTRVVD 158 (825)
T ss_pred ccccCCceeeeehhhhhhhhhhh--------ccccCcceeeeccceEEeccccccccceehhhhccCceeeecCCcceeE
Confidence 99999999999999998888765 99999999999999999999999999999999988888888766 6678
Q ss_pred EEEEeeCCCEEEEEeCCCeEEEEEcCCCeEEEEEecCCCCeeeEEECCCCCEEEEEeCCCeEEEEEcCCccEEEEeeeC-
Q 003579 520 KIVYHRVNGLLATVADDLVIRLFDVVALRMVRKFEGHTDRITDFCFSEDGKWLLSSGMDGSLRIWDVILARQIDAIHVD- 598 (809)
Q Consensus 520 ~~~~s~~~~~la~~~~d~~I~v~d~~~~~~~~~~~~h~~~I~~l~fspdg~~l~s~s~D~~I~vwd~~~~~~i~~~~~~- 598 (809)
.+.|+|+|++++.+++|..++|||...|+....|.+|.+.|..+.|+|..-.+++||.|++|++||+++-+.+......
T Consensus 159 ~l~lsP~Gr~v~~g~ed~tvki~d~~agk~~~ef~~~e~~v~sle~hp~e~Lla~Gs~d~tv~f~dletfe~I~s~~~~~ 238 (825)
T KOG0267|consen 159 VLRLSPDGRWVASGGEDNTVKIWDLTAGKLSKEFKSHEGKVQSLEFHPLEVLLAPGSSDRTVRFWDLETFEVISSGKPET 238 (825)
T ss_pred EEeecCCCceeeccCCcceeeeecccccccccccccccccccccccCchhhhhccCCCCceeeeeccceeEEeeccCCcc
Confidence 8899999999999999999999999999999999999999999999999989999999999999999998888776544
Q ss_pred cceEEEEEcCCCCeEEEEEeCC
Q 003579 599 VSITALSLSPNMDVLATAHVDQ 620 (809)
Q Consensus 599 ~~v~~l~~spdg~~lat~~~d~ 620 (809)
..|.+++|+|+|..++++....
T Consensus 239 ~~v~~~~fn~~~~~~~~G~q~s 260 (825)
T KOG0267|consen 239 DGVRSLAFNPDGKIVLSGEQIS 260 (825)
T ss_pred CCceeeeecCCceeeecCchhh
Confidence 3599999999999988887664
No 161
>KOG1034 consensus Transcriptional repressor EED/ESC/FIE, required for transcriptional silencing, WD repeat superfamily [Transcription]
Probab=99.86 E-value=6.8e-21 Score=179.47 Aligned_cols=323 Identities=17% Similarity=0.240 Sum_probs=220.5
Q ss_pred cCCCCCEEEEEEcC-----CCCEEEEEeCCCeEEEEEeeCCeEE---EEEec-cCCCcEEEEEEecC---CCCEEEEEcC
Q 003579 178 KGWGSSISSCVSSP-----ALDVVAVGCSDGKIHVHNVRYDEEL---VTFTH-SMRGAVTALAFSSD---GQPLLASGAS 245 (809)
Q Consensus 178 ~~~~~~I~~l~~sp-----~~~~la~g~~dg~i~iwd~~~~~~~---~~~~~-~~~~~V~~l~fs~d---g~~~lasg~~ 245 (809)
..|..+|..++|.+ +-+.+|+.+. ..+.+|+......+ +.... .+......++|+-| +.+++|+|+.
T Consensus 35 ed~~~~I~gv~fN~~~~~~e~~vfatvG~-~rvtiy~c~~d~~ir~lq~y~D~d~~Esfytcsw~yd~~~~~p~la~~G~ 113 (385)
T KOG1034|consen 35 EDHNKPIFGVAFNSFLGCDEPQVFATVGG-NRVTIYECPGDGGIRLLQSYADEDHDESFYTCSWSYDSNTGNPFLAAGGY 113 (385)
T ss_pred ccCCCccceeeeehhcCCCCCceEEEeCC-cEEEEEEECCccceeeeeeccCCCCCcceEEEEEEecCCCCCeeEEeecc
Confidence 46788999999985 2356666665 57899988755433 33332 24567788888754 5679999999
Q ss_pred CCcEEEEECCCceeeeeeecccccceEEEEEecCCC-EEEEEcCCCcEEEEEeeCCCCCceeEEeccCCCCCCeeEEEec
Q 003579 246 SGVISIWNLEKRRLQSVIREAHDNAIISLHFFANEP-VLMSASADNSIKMWIFDTTDGDPRLLRFRSGHSAPPLCIRFYA 324 (809)
Q Consensus 246 dg~I~iwdl~~~~~~~~~~~~h~~~V~~l~~~~~~~-~l~s~s~d~~i~vw~~~~~~~~~~~~~~~~~h~~~v~~i~~~~ 324 (809)
-|.|+|.|+.++++...+. +|...|+.+.+.|+.+ +++++|.|.+||+|++...... .+..-..||...|.++.|++
T Consensus 114 ~GvIrVid~~~~~~~~~~~-ghG~sINeik~~p~~~qlvls~SkD~svRlwnI~~~~Cv-~VfGG~egHrdeVLSvD~~~ 191 (385)
T KOG1034|consen 114 LGVIRVIDVVSGQCSKNYR-GHGGSINEIKFHPDRPQLVLSASKDHSVRLWNIQTDVCV-AVFGGVEGHRDEVLSVDFSL 191 (385)
T ss_pred eeEEEEEecchhhhcccee-ccCccchhhhcCCCCCcEEEEecCCceEEEEeccCCeEE-EEecccccccCcEEEEEEcC
Confidence 9999999999999999999 9999999999999774 8889999999999999876321 12223468999999999999
Q ss_pred CCCEEEEEECCCCEEEEEeeecccceecchhhHHHHHhhccchhhhhccCceeEEeeccccccccceeEEeecCCceEEE
Q 003579 325 NGRHILSAGQDRAFRLFSVIQDQQSRELSQRHVAKRARKLKMKEEELKLKPVIAFDCAEIRERDWCNVVTCHMDTAQAYV 404 (809)
Q Consensus 325 ~~~~l~s~~~dg~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 404 (809)
+|.+|+++|.|.+|++|++...+....+.... .........++|...
T Consensus 192 ~gd~i~ScGmDhslk~W~l~~~~f~~~lE~s~------~~~~~~t~~pfpt~~--------------------------- 238 (385)
T KOG1034|consen 192 DGDRIASCGMDHSLKLWRLNVKEFKNKLELSI------TYSPNKTTRPFPTPK--------------------------- 238 (385)
T ss_pred CCCeeeccCCcceEEEEecChhHHhhhhhhhc------ccCCCCccCcCCccc---------------------------
Confidence 99999999999999999987543322221100 000000000011000
Q ss_pred EEeeeeeecceeeecCCCCCCCeEEEEEcCCCCEEEEEeCCCcEEEEEC-CCCceeeeeeCcccc-----cccCccccEE
Q 003579 405 WRLQNFVLGEHILRPCPENPTAVKACTISACGNFAVLGTAGGWIERFNL-QSGISRGSYLDMSER-----SNYAHNGEVV 478 (809)
Q Consensus 405 w~~~~~~~~~~~~~~~~~~~~~v~~v~~s~~g~~l~~g~~~g~i~i~~~-~~~~~~~~~~~~~~~-----~~~~h~~~v~ 478 (809)
.....+...+-|...|.|+.|- |+++++-+-++.|..|.. +-++........... ...-....|.
T Consensus 239 -------~~fp~fst~diHrnyVDCvrw~--gd~ilSkscenaI~~w~pgkl~e~~~~vkp~es~~Ti~~~~~~~~c~iW 309 (385)
T KOG1034|consen 239 -------THFPDFSTTDIHRNYVDCVRWF--GDFILSKSCENAIVCWKPGKLEESIHNVKPPESATTILGEFDYPMCDIW 309 (385)
T ss_pred -------cccccccccccccchHHHHHHH--hhheeecccCceEEEEecchhhhhhhccCCCccceeeeeEeccCccceE
Confidence 0001111222344555555554 588898888999999987 222221111100000 0111223344
Q ss_pred E--EEEcCCCCEEEEEeCcCeEEEEECCCCceee--eeec---CCCeEEEEEeeCCCEEEEEeCCCeEEEEEcC
Q 003579 479 G--VACDSTNTLMISAGYHGDIKVWDFKGRDLKS--RWEV---GCSLVKIVYHRVNGLLATVADDLVIRLFDVV 545 (809)
Q Consensus 479 ~--l~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~--~~~~---~~~i~~~~~s~~~~~la~~~~d~~I~v~d~~ 545 (809)
- .+|++-++.||.+...|.|.+||++..++.. ++.+ ...|...+|+.|+.+|+..++|++|.-||..
T Consensus 310 firf~~d~~~~~la~gnq~g~v~vwdL~~~ep~~~ttl~~s~~~~tVRQ~sfS~dgs~lv~vcdd~~Vwrwdrv 383 (385)
T KOG1034|consen 310 FIRFAFDPWQKMLALGNQSGKVYVWDLDNNEPPKCTTLTHSKSGSTVRQTSFSRDGSILVLVCDDGTVWRWDRV 383 (385)
T ss_pred EEEEeecHHHHHHhhccCCCcEEEEECCCCCCccCceEEeccccceeeeeeecccCcEEEEEeCCCcEEEEEee
Confidence 3 4567788999999999999999999776632 2222 3789999999999999999999999999864
No 162
>KOG2919 consensus Guanine nucleotide-binding protein [General function prediction only]
Probab=99.86 E-value=7e-20 Score=172.16 Aligned_cols=285 Identities=17% Similarity=0.253 Sum_probs=213.3
Q ss_pred ceEEEEEecCCCEEEEEcCCCcEEEEEeeCCCCC---------ceeEEeccCCCCCCeeEEEe-------cCCCEEEEEE
Q 003579 270 AIISLHFFANEPVLMSASADNSIKMWIFDTTDGD---------PRLLRFRSGHSAPPLCIRFY-------ANGRHILSAG 333 (809)
Q Consensus 270 ~V~~l~~~~~~~~l~s~s~d~~i~vw~~~~~~~~---------~~~~~~~~~h~~~v~~i~~~-------~~~~~l~s~~ 333 (809)
-..++.|+|||..|++.+.|+.+++|++...... .............|...+|. |+..++++.+
T Consensus 51 f~kgckWSPDGSciL~~sedn~l~~~nlP~dlys~~~~~~~~~~~~~~~r~~eg~tvydy~wYs~M~s~qP~t~l~a~ss 130 (406)
T KOG2919|consen 51 FLKGCKWSPDGSCILSLSEDNCLNCWNLPFDLYSKKADGPLNFSKHLSYRYQEGETVYDYCWYSRMKSDQPSTNLFAVSS 130 (406)
T ss_pred hhccceeCCCCceEEeecccCeeeEEecChhhcccCCCCccccccceeEEeccCCEEEEEEeeeccccCCCccceeeecc
Confidence 4567899999999999999999999987543211 01111112233456677776 4677899999
Q ss_pred CCCCEEEEEeeecccceecchhhHHHHHhhccchhhhhccCceeEEeeccccccccceeEEeecCCceEEEEEeeeeeec
Q 003579 334 QDRAFRLFSVIQDQQSRELSQRHVAKRARKLKMKEEELKLKPVIAFDCAEIRERDWCNVVTCHMDTAQAYVWRLQNFVLG 413 (809)
Q Consensus 334 ~dg~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~ 413 (809)
.+.-|++||..+++....+..-...
T Consensus 131 r~~PIh~wdaftG~lraSy~~ydh~------------------------------------------------------- 155 (406)
T KOG2919|consen 131 RDQPIHLWDAFTGKLRASYRAYDHQ------------------------------------------------------- 155 (406)
T ss_pred ccCceeeeeccccccccchhhhhhH-------------------------------------------------------
Confidence 9999999999887765544321000
Q ss_pred ceeeecCCCCCCCeEEEEEcCCCCEEEEEeCCCcEEEEEC-CCCceeeeeeCcccccccCccccEEEEEEcCCC-CEEEE
Q 003579 414 EHILRPCPENPTAVKACTISACGNFAVLGTAGGWIERFNL-QSGISRGSYLDMSERSNYAHNGEVVGVACDSTN-TLMIS 491 (809)
Q Consensus 414 ~~~~~~~~~~~~~v~~v~~s~~g~~l~~g~~~g~i~i~~~-~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~-~~l~s 491 (809)
..-....+++|+|||..|++|. ...|++||+ +.|..-..+.... ....+..+-+.+++++|.. +.++.
T Consensus 156 --------de~taAhsL~Fs~DGeqlfaGy-krcirvFdt~RpGr~c~vy~t~~-~~k~gq~giisc~a~sP~~~~~~a~ 225 (406)
T KOG2919|consen 156 --------DEYTAAHSLQFSPDGEQLFAGY-KRCIRVFDTSRPGRDCPVYTTVT-KGKFGQKGIISCFAFSPMDSKTLAV 225 (406)
T ss_pred --------HhhhhheeEEecCCCCeEeecc-cceEEEeeccCCCCCCcchhhhh-cccccccceeeeeeccCCCCcceee
Confidence 0014567899999999999886 467999999 5665544433111 0112457789999999966 58899
Q ss_pred EeCcCeEEEEECCCCceeeeeecC-CCeEEEEEeeCCCEEEEEeC-CCeEEEEEcCC-CeEEEEEecCCC-Ceee--EEE
Q 003579 492 AGYHGDIKVWDFKGRDLKSRWEVG-CSLVKIVYHRVNGLLATVAD-DLVIRLFDVVA-LRMVRKFEGHTD-RITD--FCF 565 (809)
Q Consensus 492 ~~~dg~i~iwd~~~~~~~~~~~~~-~~i~~~~~s~~~~~la~~~~-d~~I~v~d~~~-~~~~~~~~~h~~-~I~~--l~f 565 (809)
++....+-||.-..+.++..+..+ +.|+.++|+++|+.|.+|.. |-.|..||++. +.++..+..|.+ .=.. +..
T Consensus 226 gsY~q~~giy~~~~~~pl~llggh~gGvThL~~~edGn~lfsGaRk~dkIl~WDiR~~~~pv~~L~rhv~~TNQRI~FDl 305 (406)
T KOG2919|consen 226 GSYGQRVGIYNDDGRRPLQLLGGHGGGVTHLQWCEDGNKLFSGARKDDKILCWDIRYSRDPVYALERHVGDTNQRILFDL 305 (406)
T ss_pred ecccceeeeEecCCCCceeeecccCCCeeeEEeccCcCeecccccCCCeEEEEeehhccchhhhhhhhccCccceEEEec
Confidence 999999999998888888877655 89999999999999999976 77999999975 456777777765 2222 455
Q ss_pred CCCCCEEEEEeCCCeEEEEEcCC-ccEEEEeeeCcc-eEEEEEcCCCCeEEEEEeC
Q 003579 566 SEDGKWLLSSGMDGSLRIWDVIL-ARQIDAIHVDVS-ITALSLSPNMDVLATAHVD 619 (809)
Q Consensus 566 spdg~~l~s~s~D~~I~vwd~~~-~~~i~~~~~~~~-v~~l~~spdg~~lat~~~d 619 (809)
.|+|++|++|+.||.|++||+++ |..+..+..++. ++.++++|--..+||++..
T Consensus 306 d~~~~~LasG~tdG~V~vwdlk~~gn~~sv~~~~sd~vNgvslnP~mpilatssGq 361 (406)
T KOG2919|consen 306 DPKGEILASGDTDGSVRVWDLKDLGNEVSVTGNYSDTVNGVSLNPIMPILATSSGQ 361 (406)
T ss_pred CCCCceeeccCCCccEEEEecCCCCCcccccccccccccceecCcccceeeeccCc
Confidence 78999999999999999999998 776766665554 9999999999999998754
No 163
>KOG0302 consensus Ribosome Assembly protein [General function prediction only]
Probab=99.86 E-value=3.5e-20 Score=177.79 Aligned_cols=250 Identities=20% Similarity=0.309 Sum_probs=190.8
Q ss_pred EccccccEEEEEE----eCCEEEEEeCCCcEEEEEcCCCc------------cccceeeeEEcCCccccEEEEeCCCCCC
Q 003579 89 WSRHSAKVNLLLL----FGEHILSIDIDGNMFIWAFKGIE------------ENLAPVGHVKLDDKFTPTCIMHPDTYLN 152 (809)
Q Consensus 89 ~~~h~~~V~~l~~----~g~~l~s~~~dg~i~vWd~~~~~------------~~~~~~~~~~~~~~~~~~~~~~p~~~~~ 152 (809)
..+|.+.+..+.. +..+.++-+..|.|.||++...- ....|+.++..|........|+|..+ .
T Consensus 147 ~i~h~g~~NRvr~~~~~~~~~~aswse~G~V~Vw~l~~~l~~l~~~~~~~~~s~~~Pl~t~~ghk~EGy~LdWSp~~~-g 225 (440)
T KOG0302|consen 147 SIPHYGGINRVRVSRLGNEVLCASWSENGRVQVWDLAPHLNALSEPGLEVKDSEFRPLFTFNGHKGEGYGLDWSPIKT-G 225 (440)
T ss_pred ccccccccceeeecccCCcceeeeecccCcEEEEEchhhhhhhcCccccccccccCceEEecccCccceeeecccccc-c
Confidence 4567777776664 34566777889999999986421 12345677777888788889999665 6
Q ss_pred EEEEEeCCCeEEEEeCCCCceE---EEEcCCCCCEEEEEEcCCC-CEEEEEeCCCeEEEEEeeCCe-EEEEEeccCCCcE
Q 003579 153 KVIVGSQEGSLQLWNISTKKKL---YEFKGWGSSISSCVSSPAL-DVVAVGCSDGKIHVHNVRYDE-ELVTFTHSMRGAV 227 (809)
Q Consensus 153 ~l~~~~~dg~i~lwd~~~~~~~---~~~~~~~~~I~~l~~sp~~-~~la~g~~dg~i~iwd~~~~~-~~~~~~~~~~~~V 227 (809)
.+++|...+.|++|...+|.=. ..|.+|...|-.++|||.. .++|+++.||+|+|||++.+. ....+...|.+.|
T Consensus 226 ~LlsGDc~~~I~lw~~~~g~W~vd~~Pf~gH~~SVEDLqWSptE~~vfaScS~DgsIrIWDiRs~~~~~~~~~kAh~sDV 305 (440)
T KOG0302|consen 226 RLLSGDCVKGIHLWEPSTGSWKVDQRPFTGHTKSVEDLQWSPTEDGVFASCSCDGSIRIWDIRSGPKKAAVSTKAHNSDV 305 (440)
T ss_pred ccccCccccceEeeeeccCceeecCccccccccchhhhccCCccCceEEeeecCceEEEEEecCCCccceeEeeccCCce
Confidence 7999998999999999886422 3467899999999999964 689999999999999999883 2222224447899
Q ss_pred EEEEEecCCCCEEEEEcCCCcEEEEECCC---ceeeeeeecccccceEEEEEecCC-CEEEEEcCCCcEEEEEeeCCCC-
Q 003579 228 TALAFSSDGQPLLASGASSGVISIWNLEK---RRLQSVIREAHDNAIISLHFFANE-PVLMSASADNSIKMWIFDTTDG- 302 (809)
Q Consensus 228 ~~l~fs~dg~~~lasg~~dg~I~iwdl~~---~~~~~~~~~~h~~~V~~l~~~~~~-~~l~s~s~d~~i~vw~~~~~~~- 302 (809)
+.|+|+.+-. +||+|+.||+++|||++. ++.+..+. -|..+|+++.|+|.. ..++++|.|++|.+||+.....
T Consensus 306 NVISWnr~~~-lLasG~DdGt~~iwDLR~~~~~~pVA~fk-~Hk~pItsieW~p~e~s~iaasg~D~QitiWDlsvE~D~ 383 (440)
T KOG0302|consen 306 NVISWNRREP-LLASGGDDGTLSIWDLRQFKSGQPVATFK-YHKAPITSIEWHPHEDSVIAASGEDNQITIWDLSVEADE 383 (440)
T ss_pred eeEEccCCcc-eeeecCCCceEEEEEhhhccCCCcceeEE-eccCCeeEEEeccccCceEEeccCCCcEEEEEeeccCCh
Confidence 9999999887 999999999999999976 46777887 899999999999954 4788889999999999865422
Q ss_pred --------------CceeEEeccCCCCCCeeEEEec-CCCEEEEEECCCCEEEEEe
Q 003579 303 --------------DPRLLRFRSGHSAPPLCIRFYA-NGRHILSAGQDRAFRLFSV 343 (809)
Q Consensus 303 --------------~~~~~~~~~~h~~~v~~i~~~~-~~~~l~s~~~dg~i~~wd~ 343 (809)
.++++.. ..-...+..+.|++ ...++++.+.|| +.+|..
T Consensus 384 ee~~~~a~~~L~dlPpQLLFV-HqGQke~KevhWH~QiPG~lvsTa~dG-fnVfkt 437 (440)
T KOG0302|consen 384 EEIDQEAAEGLQDLPPQLLFV-HQGQKEVKEVHWHRQIPGLLVSTAIDG-FNVFKT 437 (440)
T ss_pred hhhccccccchhcCCceeEEE-ecchhHhhhheeccCCCCeEEEecccc-eeEEEe
Confidence 1222222 22244688889998 345888888888 666643
No 164
>KOG1034 consensus Transcriptional repressor EED/ESC/FIE, required for transcriptional silencing, WD repeat superfamily [Transcription]
Probab=99.86 E-value=6e-20 Score=173.16 Aligned_cols=333 Identities=15% Similarity=0.208 Sum_probs=228.4
Q ss_pred EccccccEEEEEEe-------CCEEEEEeCCCcEEEEEcCCCccccceeeeEE--cCCccccEEEEeCCCC--CCEEEEE
Q 003579 89 WSRHSAKVNLLLLF-------GEHILSIDIDGNMFIWAFKGIEENLAPVGHVK--LDDKFTPTCIMHPDTY--LNKVIVG 157 (809)
Q Consensus 89 ~~~h~~~V~~l~~~-------g~~l~s~~~dg~i~vWd~~~~~~~~~~~~~~~--~~~~~~~~~~~~p~~~--~~~l~~~ 157 (809)
...|+.+|..++|. -+-+++++ .+.+.+++........ .+..+. -+.....+|++.-+.+ ...+++|
T Consensus 34 ~ed~~~~I~gv~fN~~~~~~e~~vfatvG-~~rvtiy~c~~d~~ir-~lq~y~D~d~~Esfytcsw~yd~~~~~p~la~~ 111 (385)
T KOG1034|consen 34 KEDHNKPIFGVAFNSFLGCDEPQVFATVG-GNRVTIYECPGDGGIR-LLQSYADEDHDESFYTCSWSYDSNTGNPFLAAG 111 (385)
T ss_pred hccCCCccceeeeehhcCCCCCceEEEeC-CcEEEEEEECCcccee-eeeeccCCCCCcceEEEEEEecCCCCCeeEEee
Confidence 45677888888873 23344444 5667777765543210 111111 1233445677665543 2578888
Q ss_pred eCCCeEEEEeCCCCceEEEEcCCCCCEEEEEEcCCC-CEEEEEeCCCeEEEEEeeCCeEEEEEec--cCCCcEEEEEEec
Q 003579 158 SQEGSLQLWNISTKKKLYEFKGWGSSISSCVSSPAL-DVVAVGCSDGKIHVHNVRYDEELVTFTH--SMRGAVTALAFSS 234 (809)
Q Consensus 158 ~~dg~i~lwd~~~~~~~~~~~~~~~~I~~l~~sp~~-~~la~g~~dg~i~iwd~~~~~~~~~~~~--~~~~~V~~l~fs~ 234 (809)
+.-|.|++.|+.++++...+.+|...|..+.+.|+. ++|++++.|..|++||++++.++..|.+ +|.+.|.++.|++
T Consensus 112 G~~GvIrVid~~~~~~~~~~~ghG~sINeik~~p~~~qlvls~SkD~svRlwnI~~~~Cv~VfGG~egHrdeVLSvD~~~ 191 (385)
T KOG1034|consen 112 GYLGVIRVIDVVSGQCSKNYRGHGGSINEIKFHPDRPQLVLSASKDHSVRLWNIQTDVCVAVFGGVEGHRDEVLSVDFSL 191 (385)
T ss_pred cceeEEEEEecchhhhccceeccCccchhhhcCCCCCcEEEEecCCceEEEEeccCCeEEEEecccccccCcEEEEEEcC
Confidence 899999999999999999999999999999999975 7999999999999999999999999873 5688999999999
Q ss_pred CCCCEEEEEcCCCcEEEEECCCceeeeeeecccccceEEEEEecCCCEEEEEcCCCcEEEEEeeCCCCCceeEEeccCCC
Q 003579 235 DGQPLLASGASSGVISIWNLEKRRLQSVIREAHDNAIISLHFFANEPVLMSASADNSIKMWIFDTTDGDPRLLRFRSGHS 314 (809)
Q Consensus 235 dg~~~lasg~~dg~I~iwdl~~~~~~~~~~~~h~~~V~~l~~~~~~~~l~s~s~d~~i~vw~~~~~~~~~~~~~~~~~h~ 314 (809)
+|. .+++++.|.+|++|++...+....+. .+..|+|++...-.- .-...+.++ .+..-|.
T Consensus 192 ~gd-~i~ScGmDhslk~W~l~~~~f~~~lE-------~s~~~~~~~t~~pfp--t~~~~fp~f----------st~diHr 251 (385)
T KOG1034|consen 192 DGD-RIASCGMDHSLKLWRLNVKEFKNKLE-------LSITYSPNKTTRPFP--TPKTHFPDF----------STTDIHR 251 (385)
T ss_pred CCC-eeeccCCcceEEEEecChhHHhhhhh-------hhcccCCCCccCcCC--ccccccccc----------ccccccc
Confidence 999 89999999999999998766544443 124566654321100 001112221 2445799
Q ss_pred CCCeeEEEecCCCEEEEEECCCCEEEEEeeecccc-eecchhhHHHHHhhccchhhhhccCceeEEeeccccccccceeE
Q 003579 315 APPLCIRFYANGRHILSAGQDRAFRLFSVIQDQQS-RELSQRHVAKRARKLKMKEEELKLKPVIAFDCAEIRERDWCNVV 393 (809)
Q Consensus 315 ~~v~~i~~~~~~~~l~s~~~dg~i~~wd~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~ 393 (809)
..|-|++|.. .++++-+-++.|..|....-.+. .... +| +....+
T Consensus 252 nyVDCvrw~g--d~ilSkscenaI~~w~pgkl~e~~~~vk--------------------p~------------es~~Ti 297 (385)
T KOG1034|consen 252 NYVDCVRWFG--DFILSKSCENAIVCWKPGKLEESIHNVK--------------------PP------------ESATTI 297 (385)
T ss_pred chHHHHHHHh--hheeecccCceEEEEecchhhhhhhccC--------------------CC------------ccceee
Confidence 9999999984 68999999999999976311110 0000 00 000011
Q ss_pred EeecCCceEEEEEeeeeeecceeeecCCCCCCC--eEEEEEcCCCCEEEEEeCCCcEEEEECCCCceeeeeeCccccccc
Q 003579 394 TCHMDTAQAYVWRLQNFVLGEHILRPCPENPTA--VKACTISACGNFAVLGTAGGWIERFNLQSGISRGSYLDMSERSNY 471 (809)
Q Consensus 394 ~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~--v~~v~~s~~g~~l~~g~~~g~i~i~~~~~~~~~~~~~~~~~~~~~ 471 (809)
. ..++++ ... -...++.+.++.|+.|...|.|++||+........-.. .-.
T Consensus 298 ~--------~~~~~~---------------~c~iWfirf~~d~~~~~la~gnq~g~v~vwdL~~~ep~~~ttl----~~s 350 (385)
T KOG1034|consen 298 L--------GEFDYP---------------MCDIWFIRFAFDPWQKMLALGNQSGKVYVWDLDNNEPPKCTTL----THS 350 (385)
T ss_pred e--------eEeccC---------------ccceEEEEEeecHHHHHHhhccCCCcEEEEECCCCCCccCceE----Eec
Confidence 1 111111 122 23456788899999999999999999988766321110 001
Q ss_pred CccccEEEEEEcCCCCEEEEEeCcCeEEEEECC
Q 003579 472 AHNGEVVGVACDSTNTLMISAGYHGDIKVWDFK 504 (809)
Q Consensus 472 ~h~~~v~~l~~~~~~~~l~s~~~dg~i~iwd~~ 504 (809)
.....|...+|+.|+..|+....|++|.-||..
T Consensus 351 ~~~~tVRQ~sfS~dgs~lv~vcdd~~Vwrwdrv 383 (385)
T KOG1034|consen 351 KSGSTVRQTSFSRDGSILVLVCDDGTVWRWDRV 383 (385)
T ss_pred cccceeeeeeecccCcEEEEEeCCCcEEEEEee
Confidence 234578999999999999999999999999853
No 165
>KOG1188 consensus WD40 repeat protein [General function prediction only]
Probab=99.86 E-value=1.4e-20 Score=178.46 Aligned_cols=286 Identities=19% Similarity=0.333 Sum_probs=208.0
Q ss_pred CEEEEEeCCCeEEEEeCCCCceEEEEcCCCCCEEEEEEcC--CCCEEEEEeCCCeEEEEEeeCCeEEEEEe--ccCCCcE
Q 003579 152 NKVIVGSQEGSLQLWNISTKKKLYEFKGWGSSISSCVSSP--ALDVVAVGCSDGKIHVHNVRYDEELVTFT--HSMRGAV 227 (809)
Q Consensus 152 ~~l~~~~~dg~i~lwd~~~~~~~~~~~~~~~~I~~l~~sp--~~~~la~g~~dg~i~iwd~~~~~~~~~~~--~~~~~~V 227 (809)
+.++++...|.|++||..+++.+..|+++...+..+.|.. ..+.+.+++.||+|++||+++......+. ++...+.
T Consensus 41 ~~vav~lSngsv~lyd~~tg~~l~~fk~~~~~~N~vrf~~~ds~h~v~s~ssDG~Vr~wD~Rs~~e~a~~~~~~~~~~~f 120 (376)
T KOG1188|consen 41 TAVAVSLSNGSVRLYDKGTGQLLEEFKGPPATTNGVRFISCDSPHGVISCSSDGTVRLWDIRSQAESARISWTQQSGTPF 120 (376)
T ss_pred eeEEEEecCCeEEEEeccchhhhheecCCCCcccceEEecCCCCCeeEEeccCCeEEEEEeecchhhhheeccCCCCCcc
Confidence 5699999999999999999999999999999999999987 56789999999999999999877665554 3323477
Q ss_pred EEEEEecCCCCEEEEEc----CCCcEEEEECCCcee-eeeeecccccceEEEEEecCCC-EEEEEcCCCcEEEEEeeCCC
Q 003579 228 TALAFSSDGQPLLASGA----SSGVISIWNLEKRRL-QSVIREAHDNAIISLHFFANEP-VLMSASADNSIKMWIFDTTD 301 (809)
Q Consensus 228 ~~l~fs~dg~~~lasg~----~dg~I~iwdl~~~~~-~~~~~~~h~~~V~~l~~~~~~~-~l~s~s~d~~i~vw~~~~~~ 301 (809)
.|++....++ ++++|+ .+-.|.+||++..+. +..+...|...|+++.|+|..+ +|++||.||-|.++|+....
T Consensus 121 ~~ld~nck~~-ii~~GtE~~~s~A~v~lwDvR~~qq~l~~~~eSH~DDVT~lrFHP~~pnlLlSGSvDGLvnlfD~~~d~ 199 (376)
T KOG1188|consen 121 ICLDLNCKKN-IIACGTELTRSDASVVLWDVRSEQQLLRQLNESHNDDVTQLRFHPSDPNLLLSGSVDGLVNLFDTKKDN 199 (376)
T ss_pred eEeeccCcCC-eEEeccccccCceEEEEEEeccccchhhhhhhhccCcceeEEecCCCCCeEEeecccceEEeeecCCCc
Confidence 7787776666 888876 456899999998866 8888889999999999999665 99999999999999987765
Q ss_pred CCceeEEeccCCCCCCeeEEEecCC-CEEEEEECCCCEEEEEeeecccceecchhhHHHHHhhccchhhhhccCceeEEe
Q 003579 302 GDPRLLRFRSGHSAPPLCIRFYANG-RHILSAGQDRAFRLFSVIQDQQSRELSQRHVAKRARKLKMKEEELKLKPVIAFD 380 (809)
Q Consensus 302 ~~~~~~~~~~~h~~~v~~i~~~~~~-~~l~s~~~dg~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~ 380 (809)
..-.++..+ .|...|.++.|..++ +.|.+-+..++..+|++..+.....+........
T Consensus 200 EeDaL~~vi-N~~sSI~~igw~~~~ykrI~clTH~Etf~~~ele~~~~~~~~~~~~~~~~-------------------- 258 (376)
T KOG1188|consen 200 EEDALLHVI-NHGSSIHLIGWLSKKYKRIMCLTHMETFAIYELEDGSEETWLENPDVSAD-------------------- 258 (376)
T ss_pred chhhHHHhh-cccceeeeeeeecCCcceEEEEEccCceeEEEccCCChhhcccCccchhh--------------------
Confidence 444444443 677889999999876 5688888899999999988775544433211100
Q ss_pred eccccccc-cceeEEeecCCceEEEEEeeeeeecceeeecCCCCCCCeEEEEEcCCCCEE-EEEeCCCcEEEEECC---C
Q 003579 381 CAEIRERD-WCNVVTCHMDTAQAYVWRLQNFVLGEHILRPCPENPTAVKACTISACGNFA-VLGTAGGWIERFNLQ---S 455 (809)
Q Consensus 381 ~~~~~~~~-~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~v~~v~~s~~g~~l-~~g~~~g~i~i~~~~---~ 455 (809)
..|..+ -++++-+ .. ..++.+. +.|+..|...++-+. +
T Consensus 259 --d~r~~~~~dY~I~~----------------------------------~~-~~~~~~~~l~g~~~n~~~~~~~~~~~s 301 (376)
T KOG1188|consen 259 --DLRKEDNCDYVINE----------------------------------HS-PGDKDTCALAGTDSNKGTIFPLVDTSS 301 (376)
T ss_pred --hHHhhhhhhheeec----------------------------------cc-CCCcceEEEeccccCceeEEEeeeccc
Confidence 000000 0011111 11 1122333 334434544444332 3
Q ss_pred Cce---eeeeeCcccccccCccccEEEEEEcCCCCEEEEEeCcCeEEEEEC
Q 003579 456 GIS---RGSYLDMSERSNYAHNGEVVGVACDSTNTLMISAGYHGDIKVWDF 503 (809)
Q Consensus 456 ~~~---~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~l~s~~~dg~i~iwd~ 503 (809)
+.. ...+. .+|..-|+++.|...+..+.|||.||.+.+|..
T Consensus 302 ~~~~~~~a~l~-------g~~~eiVR~i~~~~~~~~l~TGGEDG~l~~Wk~ 345 (376)
T KOG1188|consen 302 GSLLTEPAILQ-------GGHEEIVRDILFDVKNDVLYTGGEDGLLQAWKV 345 (376)
T ss_pred ccccCcccccc-------CCcHHHHHHHhhhcccceeeccCCCceEEEEec
Confidence 322 22222 257788999999999999999999999999985
No 166
>KOG0270 consensus WD40 repeat-containing protein [Function unknown]
Probab=99.85 E-value=4.2e-20 Score=181.21 Aligned_cols=241 Identities=17% Similarity=0.315 Sum_probs=182.8
Q ss_pred CCEEEEEeCCCcEEEEEcCCCccccce--ee-------------e--EEcCCccccEEEEeCCCCCCEEEEEeCCCeEEE
Q 003579 103 GEHILSIDIDGNMFIWAFKGIEENLAP--VG-------------H--VKLDDKFTPTCIMHPDTYLNKVIVGSQEGSLQL 165 (809)
Q Consensus 103 g~~l~s~~~dg~i~vWd~~~~~~~~~~--~~-------------~--~~~~~~~~~~~~~~p~~~~~~l~~~~~dg~i~l 165 (809)
|+++|.|+.|..|.|||++-.....+. +. . -..|...+..+.+..... +.|++|+.|.+|.+
T Consensus 192 gNyvAiGtmdp~IeIWDLDI~d~v~P~~~LGs~~sk~~~k~~k~~~~~~gHTdavl~Ls~n~~~~-nVLaSgsaD~TV~l 270 (463)
T KOG0270|consen 192 GNYVAIGTMDPEIEIWDLDIVDAVLPCVTLGSKASKKKKKKGKRSNSASGHTDAVLALSWNRNFR-NVLASGSADKTVKL 270 (463)
T ss_pred cceEEEeccCceeEEeccccccccccceeechhhhhhhhhhcccccccccchHHHHHHHhccccc-eeEEecCCCceEEE
Confidence 789999999999999998753321111 00 0 011222222333333322 78999999999999
Q ss_pred EeCCCCceEEEEcCCCCCEEEEEEcCC-CCEEEEEeCCCeEEEEEeeCCe-EEEEEeccCCCcEEEEEEecCCCCEEEEE
Q 003579 166 WNISTKKKLYEFKGWGSSISSCVSSPA-LDVVAVGCSDGKIHVHNVRYDE-ELVTFTHSMRGAVTALAFSSDGQPLLASG 243 (809)
Q Consensus 166 wd~~~~~~~~~~~~~~~~I~~l~~sp~-~~~la~g~~dg~i~iwd~~~~~-~~~~~~~~~~~~V~~l~fs~dg~~~lasg 243 (809)
||+.+|++..++..|...|.+++|+|. ..+|++|+.|++|.+.|.+... .-..++. .+.|-.++|.|.....++++
T Consensus 271 WD~~~g~p~~s~~~~~k~Vq~l~wh~~~p~~LLsGs~D~~V~l~D~R~~~~s~~~wk~--~g~VEkv~w~~~se~~f~~~ 348 (463)
T KOG0270|consen 271 WDVDTGKPKSSITHHGKKVQTLEWHPYEPSVLLSGSYDGTVALKDCRDPSNSGKEWKF--DGEVEKVAWDPHSENSFFVS 348 (463)
T ss_pred EEcCCCCcceehhhcCCceeEEEecCCCceEEEeccccceEEeeeccCccccCceEEe--ccceEEEEecCCCceeEEEe
Confidence 999999999999999999999999995 5799999999999999998422 2222332 57899999999998888999
Q ss_pred cCCCcEEEEECCCc-eeeeeeecccccceEEEEEecCCC-EEEEEcCCCcEEEEEeeCCCCCceeEEeccCCCCCCeeEE
Q 003579 244 ASSGVISIWNLEKR-RLQSVIREAHDNAIISLHFFANEP-VLMSASADNSIKMWIFDTTDGDPRLLRFRSGHSAPPLCIR 321 (809)
Q Consensus 244 ~~dg~I~iwdl~~~-~~~~~~~~~h~~~V~~l~~~~~~~-~l~s~s~d~~i~vw~~~~~~~~~~~~~~~~~h~~~v~~i~ 321 (809)
..||+|+-+|+++. +++.++. +|.++|.++++++.-+ +|++++.|+.|++|+++...+. ......-.-+...|.+
T Consensus 349 tddG~v~~~D~R~~~~~vwt~~-AHd~~ISgl~~n~~~p~~l~t~s~d~~Vklw~~~~~~~~--~v~~~~~~~~rl~c~~ 425 (463)
T KOG0270|consen 349 TDDGTVYYFDIRNPGKPVWTLK-AHDDEISGLSVNIQTPGLLSTASTDKVVKLWKFDVDSPK--SVKEHSFKLGRLHCFA 425 (463)
T ss_pred cCCceEEeeecCCCCCceeEEE-eccCCcceEEecCCCCcceeeccccceEEEEeecCCCCc--ccccccccccceeecc
Confidence 99999999999986 8899998 9999999999998765 7889999999999999876542 2222222223466777
Q ss_pred EecCC-CEEEEEECCCCEEEEEeeecccc
Q 003579 322 FYANG-RHILSAGQDRAFRLFSVIQDQQS 349 (809)
Q Consensus 322 ~~~~~-~~l~s~~~dg~i~~wd~~~~~~~ 349 (809)
+.|+- -.++.||..+.+++||+.+....
T Consensus 426 ~~~~~a~~la~GG~k~~~~vwd~~~~~~V 454 (463)
T KOG0270|consen 426 LDPDVAFTLAFGGEKAVLRVWDIFTNSPV 454 (463)
T ss_pred cCCCcceEEEecCccceEEEeecccChhH
Confidence 77854 35667777888999999776543
No 167
>KOG1009 consensus Chromatin assembly complex 1 subunit B/CAC2 (contains WD40 repeats) [Chromatin structure and dynamics; Replication, recombination and repair]
Probab=99.85 E-value=3.9e-19 Score=172.50 Aligned_cols=328 Identities=20% Similarity=0.231 Sum_probs=213.4
Q ss_pred CCCEEEEEEcCCCC-EEEEEeCCCeEEEEEeeCCe---------EEEEEeccCCCcEEEEEEecCCCCEEEEEcCCCcEE
Q 003579 181 GSSISSCVSSPALD-VVAVGCSDGKIHVHNVRYDE---------ELVTFTHSMRGAVTALAFSSDGQPLLASGASSGVIS 250 (809)
Q Consensus 181 ~~~I~~l~~sp~~~-~la~g~~dg~i~iwd~~~~~---------~~~~~~~~~~~~V~~l~fs~dg~~~lasg~~dg~I~ 250 (809)
..+|.++.|.++.. .+|+|+.|..|++|-+..+. .+..+.. |...|+++.|+|+|. +||+|+.+|.|.
T Consensus 13 ~~pv~s~dfq~n~~~~laT~G~D~~iriW~v~r~~~~~~~~~V~y~s~Ls~-H~~aVN~vRf~p~ge-lLASg~D~g~v~ 90 (434)
T KOG1009|consen 13 HEPVYSVDFQKNSLNKLATAGGDKDIRIWKVNRSEPGGGDMKVEYLSSLSR-HTRAVNVVRFSPDGE-LLASGGDGGEVF 90 (434)
T ss_pred CCceEEEEeccCcccceecccCccceeeeeeeecCCCCCceeEEEeecccC-CcceeEEEEEcCCcC-eeeecCCCceEE
Confidence 46788888988766 99999999999999987432 1223334 478999999999999 999999999999
Q ss_pred EEECC--------C--------ceeeeeeecccccceEEEEEecCCCEEEEEcCCCcEEEEEeeCCCCCceeEEeccCCC
Q 003579 251 IWNLE--------K--------RRLQSVIREAHDNAIISLHFFANEPVLMSASADNSIKMWIFDTTDGDPRLLRFRSGHS 314 (809)
Q Consensus 251 iwdl~--------~--------~~~~~~~~~~h~~~V~~l~~~~~~~~l~s~s~d~~i~vw~~~~~~~~~~~~~~~~~h~ 314 (809)
+|-.. + -.....+. +|...|..++|+|++.++++++.|+++++||+..+ .++....+|.
T Consensus 91 lWk~~~~~~~~~d~e~~~~ke~w~v~k~lr-~h~~diydL~Ws~d~~~l~s~s~dns~~l~Dv~~G----~l~~~~~dh~ 165 (434)
T KOG1009|consen 91 LWKQGDVRIFDADTEADLNKEKWVVKKVLR-GHRDDIYDLAWSPDSNFLVSGSVDNSVRLWDVHAG----QLLAILDDHE 165 (434)
T ss_pred EEEecCcCCccccchhhhCccceEEEEEec-ccccchhhhhccCCCceeeeeeccceEEEEEeccc----eeEeeccccc
Confidence 99765 2 12233344 89999999999999999999999999999999877 6888889999
Q ss_pred CCCeeEEEecCCCEEEEEECCCCEEEEEeeecccceecchhhHHHHHhhccchhhhhccCceeEEeeccccccccceeEE
Q 003579 315 APPLCIRFYANGRHILSAGQDRAFRLFSVIQDQQSRELSQRHVAKRARKLKMKEEELKLKPVIAFDCAEIRERDWCNVVT 394 (809)
Q Consensus 315 ~~v~~i~~~~~~~~l~s~~~dg~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~ 394 (809)
.-+..++|.|-++++++-+.|+..+.+++...+......... +..
T Consensus 166 ~yvqgvawDpl~qyv~s~s~dr~~~~~~~~~~~~~~~~~~~~-----------------------------------m~~ 210 (434)
T KOG1009|consen 166 HYVQGVAWDPLNQYVASKSSDRHPEGFSAKLKQVIKRHGLDI-----------------------------------MPA 210 (434)
T ss_pred cccceeecchhhhhhhhhccCcccceeeeeeeeeeeeeeeeE-----------------------------------eee
Confidence 999999999999999999999988888776554443322100 000
Q ss_pred eecCCceEEEEEeeeeeecceeeecCCCCCCCeEEEEEcCCCCEEEEEeC----CCcE-----EEEECCCCceeeeeeCc
Q 003579 395 CHMDTAQAYVWRLQNFVLGEHILRPCPENPTAVKACTISACGNFAVLGTA----GGWI-----ERFNLQSGISRGSYLDM 465 (809)
Q Consensus 395 ~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~v~~v~~s~~g~~l~~g~~----~g~i-----~i~~~~~~~~~~~~~~~ 465 (809)
........++..+ -.....+.....++|+|||.++++... +|.+ ++|+-..-. .
T Consensus 211 ~~~~~~e~~s~rL----------fhDeTlksFFrRlsfTPdG~llvtPag~~~~g~~~~~n~tYvfsrk~l~-------r 273 (434)
T KOG1009|consen 211 KAFNEREGKSTRL----------FHDETLKSFFRRLSFTPDGSLLVTPAGLFKVGGGVFRNTSYVFSRKDLK-------R 273 (434)
T ss_pred cccCCCCcceeee----------eecCchhhhhhhcccCCCCcEEEcccceeeeCCceeeceeEeecccccc-------C
Confidence 0001111111111 011111244566788899988887532 1111 111111000 0
Q ss_pred ccccccCccccEEEEEEcCCCCEEEEEeCcCeEEEEECCCCceeeeeecCCCeEEEEEeeCCCEEEEEeCCCeEEEEEcC
Q 003579 466 SERSNYAHNGEVVGVACDSTNTLMISAGYHGDIKVWDFKGRDLKSRWEVGCSLVKIVYHRVNGLLATVADDLVIRLFDVV 545 (809)
Q Consensus 466 ~~~~~~~h~~~v~~l~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~i~~~~~s~~~~~la~~~~d~~I~v~d~~ 545 (809)
+...+..-...+..+.++| ..|.+..-.. .+ .+.--|-+-.+|+++ ...|++||.+
T Consensus 274 P~~~lp~~~k~~lavr~~p--------------Vy~elrp~~~-------~~--~~~~lpyrlvfaiAt-~~svyvydtq 329 (434)
T KOG1009|consen 274 PAARLPSPKKPALAVRFSP--------------VYYELRPLSS-------EK--FLFVLPYRLVFAIAT-KNSVYVYDTQ 329 (434)
T ss_pred ceeecCCCCcceEEEEeee--------------eEEEeccccc-------cc--cccccccceEEEEee-cceEEEeccc
Confidence 0000011122222222222 1111110000 00 011123344455555 4589999999
Q ss_pred CCeEEEEEec-CCCCeeeEEECCCCCEEEEEeCCCeEEEEEcCCccE
Q 003579 546 ALRMVRKFEG-HTDRITDFCFSEDGKWLLSSGMDGSLRIWDVILARQ 591 (809)
Q Consensus 546 ~~~~~~~~~~-h~~~I~~l~fspdg~~l~s~s~D~~I~vwd~~~~~~ 591 (809)
+..++..... |-..|++++|++||..|+..|.||...+-.+...++
T Consensus 330 ~~~P~~~v~nihy~~iTDiaws~dg~~l~vSS~DGyCS~vtfe~~el 376 (434)
T KOG1009|consen 330 TLEPLAVVDNIHYSAITDIAWSDDGSVLLVSSTDGFCSLVTFEPWEL 376 (434)
T ss_pred cccceEEEeeeeeeeecceeecCCCcEEEEeccCCceEEEEEcchhc
Confidence 9888776654 889999999999999999999999877766665544
No 168
>KOG0270 consensus WD40 repeat-containing protein [Function unknown]
Probab=99.85 E-value=1.4e-19 Score=177.52 Aligned_cols=281 Identities=20% Similarity=0.272 Sum_probs=202.0
Q ss_pred EEEEcCCCCEEEEEeCC---Ce--EEEEEeeCCeEEEEEeccC----CCcEEEEEEecC-------CCCEEEEEcCCCcE
Q 003579 186 SCVSSPALDVVAVGCSD---GK--IHVHNVRYDEELVTFTHSM----RGAVTALAFSSD-------GQPLLASGASSGVI 249 (809)
Q Consensus 186 ~l~~sp~~~~la~g~~d---g~--i~iwd~~~~~~~~~~~~~~----~~~V~~l~fs~d-------g~~~lasg~~dg~I 249 (809)
.+..-|..+++++|-.+ .. +++||-.... +..|| .....|+.|..- |+ ++|.|+.+..|
T Consensus 130 e~~V~psDnlIl~ar~eddvs~LEvYVyn~~e~n----lYvHHD~ilpafPLC~ewld~~~~~~~~gN-yvAiGtmdp~I 204 (463)
T KOG0270|consen 130 EEQVKPSDNLILCARNEDDVSYLEVYVYNEEEEN----LYVHHDFILPAFPLCIEWLDHGSKSGGAGN-YVAIGTMDPEI 204 (463)
T ss_pred cceeccCCcEEEEeeccCCceEEEEEEEcCCCcc----eeEecceeccCcchhhhhhhcCCCCCCCcc-eEEEeccCcee
Confidence 44555766666666433 23 4555533211 11122 234456666532 34 99999999999
Q ss_pred EEEECCCcee--------------------eeeeecccccceEEEEEecCC-CEEEEEcCCCcEEEEEeeCCCCCceeEE
Q 003579 250 SIWNLEKRRL--------------------QSVIREAHDNAIISLHFFANE-PVLMSASADNSIKMWIFDTTDGDPRLLR 308 (809)
Q Consensus 250 ~iwdl~~~~~--------------------~~~~~~~h~~~V~~l~~~~~~-~~l~s~s~d~~i~vw~~~~~~~~~~~~~ 308 (809)
.|||+.-... ......+|+..|.++.|...- +.|++||.|.+|++||++.. .+..
T Consensus 205 eIWDLDI~d~v~P~~~LGs~~sk~~~k~~k~~~~~~gHTdavl~Ls~n~~~~nVLaSgsaD~TV~lWD~~~g----~p~~ 280 (463)
T KOG0270|consen 205 EIWDLDIVDAVLPCVTLGSKASKKKKKKGKRSNSASGHTDAVLALSWNRNFRNVLASGSADKTVKLWDVDTG----KPKS 280 (463)
T ss_pred EEeccccccccccceeechhhhhhhhhhcccccccccchHHHHHHHhccccceeEEecCCCceEEEEEcCCC----Ccce
Confidence 9999852200 000112688899999998754 48999999999999999887 4566
Q ss_pred eccCCCCCCeeEEEec-CCCEEEEEECCCCEEEEEeeecccceecchhhHHHHHhhccchhhhhccCceeEEeecccccc
Q 003579 309 FRSGHSAPPLCIRFYA-NGRHILSAGQDRAFRLFSVIQDQQSRELSQRHVAKRARKLKMKEEELKLKPVIAFDCAEIRER 387 (809)
Q Consensus 309 ~~~~h~~~v~~i~~~~-~~~~l~s~~~dg~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~ 387 (809)
++..|...|.++.|+| ....|++|+.|+++.+.|.+...+...
T Consensus 281 s~~~~~k~Vq~l~wh~~~p~~LLsGs~D~~V~l~D~R~~~~s~~------------------------------------ 324 (463)
T KOG0270|consen 281 SITHHGKKVQTLEWHPYEPSVLLSGSYDGTVALKDCRDPSNSGK------------------------------------ 324 (463)
T ss_pred ehhhcCCceeEEEecCCCceEEEeccccceEEeeeccCccccCc------------------------------------
Confidence 6678999999999999 778999999999999999875322111
Q ss_pred ccceeEEeecCCceEEEEEeeeeeecceeeecCCCCCCCeEEEEEcCC-CCEEEEEeCCCcEEEEECCCC-ceeeeeeCc
Q 003579 388 DWCNVVTCHMDTAQAYVWRLQNFVLGEHILRPCPENPTAVKACTISAC-GNFAVLGTAGGWIERFNLQSG-ISRGSYLDM 465 (809)
Q Consensus 388 ~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~v~~v~~s~~-g~~l~~g~~~g~i~i~~~~~~-~~~~~~~~~ 465 (809)
-|.+ .+.|-.++|.|. .+.+++++.||.++-+|+++. +...+..
T Consensus 325 ----------------~wk~----------------~g~VEkv~w~~~se~~f~~~tddG~v~~~D~R~~~~~vwt~~-- 370 (463)
T KOG0270|consen 325 ----------------EWKF----------------DGEVEKVAWDPHSENSFFVSTDDGTVYYFDIRNPGKPVWTLK-- 370 (463)
T ss_pred ----------------eEEe----------------ccceEEEEecCCCceeEEEecCCceEEeeecCCCCCceeEEE--
Confidence 1111 177888999884 467888999999999999876 6666664
Q ss_pred ccccccCccccEEEEEEcCCC-CEEEEEeCcCeEEEEECCCCceeeeeecC---CCeEEEEEeeCCC-EEEEEeCCCeEE
Q 003579 466 SERSNYAHNGEVVGVACDSTN-TLMISAGYHGDIKVWDFKGRDLKSRWEVG---CSLVKIVYHRVNG-LLATVADDLVIR 540 (809)
Q Consensus 466 ~~~~~~~h~~~v~~l~~~~~~-~~l~s~~~dg~i~iwd~~~~~~~~~~~~~---~~i~~~~~s~~~~-~la~~~~d~~I~ 540 (809)
+|.++|.++++++.. .++++++.|+.|++|++..........+. +...|+++.|+-. .+|+|+..+.++
T Consensus 371 ------AHd~~ISgl~~n~~~p~~l~t~s~d~~Vklw~~~~~~~~~v~~~~~~~~rl~c~~~~~~~a~~la~GG~k~~~~ 444 (463)
T KOG0270|consen 371 ------AHDDEISGLSVNIQTPGLLSTASTDKVVKLWKFDVDSPKSVKEHSFKLGRLHCFALDPDVAFTLAFGGEKAVLR 444 (463)
T ss_pred ------eccCCcceEEecCCCCcceeeccccceEEEEeecCCCCcccccccccccceeecccCCCcceEEEecCccceEE
Confidence 999999999999865 57889999999999999865543333322 4567777777654 677888888999
Q ss_pred EEEcCCCeEEE
Q 003579 541 LFDVVALRMVR 551 (809)
Q Consensus 541 v~d~~~~~~~~ 551 (809)
|||+.+...++
T Consensus 445 vwd~~~~~~V~ 455 (463)
T KOG0270|consen 445 VWDIFTNSPVR 455 (463)
T ss_pred EeecccChhHH
Confidence 99998876554
No 169
>KOG0322 consensus G-protein beta subunit-like protein GNB1L, contains WD repeats [General function prediction only]
Probab=99.85 E-value=6.5e-20 Score=167.69 Aligned_cols=308 Identities=16% Similarity=0.233 Sum_probs=215.7
Q ss_pred ceEEEEcCCCCCEEEEEEcCCCCEEEEEeCCCeEEEEEeeCCeEEEEEeccCCCcEEEEEEecCCCCEEEEEcCCCcEEE
Q 003579 172 KKLYEFKGWGSSISSCVSSPALDVVAVGCSDGKIHVHNVRYDEELVTFTHSMRGAVTALAFSSDGQPLLASGASSGVISI 251 (809)
Q Consensus 172 ~~~~~~~~~~~~I~~l~~sp~~~~la~g~~dg~i~iwd~~~~~~~~~~~~~~~~~V~~l~fs~dg~~~lasg~~dg~I~i 251 (809)
.+.+.+++|.+.|+++.|..++ +|.+|..-|.|++|++.+...+..+...+...|+.+.-.|++. |.+-+.|+.+.+
T Consensus 5 dP~fvLRp~~~~v~s~~fqa~~-rL~sg~~~G~V~~w~lqt~r~~~~~r~~g~~~it~lq~~p~d~--l~tqgRd~~L~l 81 (323)
T KOG0322|consen 5 DPFFVLRPHSSSVTSVLFQANE-RLMSGLSVGIVKMWVLQTERDLPLIRLFGRLFITNLQSIPNDS--LDTQGRDPLLIL 81 (323)
T ss_pred CCeeEeccccchheehhhccch-hhhcccccceEEEEEeecCccchhhhhhccceeeceeecCCcc--hhhcCCCceEEE
Confidence 4567788999999999998876 4899999999999999999999999866688999999999865 788899999999
Q ss_pred EECCCceeeeeeecccccceEEEEEecCCCEEEEEcCCCcEEEEEeeCCCCCceeEEeccCCCCCCeeEEEecCCCEEEE
Q 003579 252 WNLEKRRLQSVIREAHDNAIISLHFFANEPVLMSASADNSIKMWIFDTTDGDPRLLRFRSGHSAPPLCIRFYANGRHILS 331 (809)
Q Consensus 252 wdl~~~~~~~~~~~~h~~~V~~l~~~~~~~~l~s~s~d~~i~vw~~~~~~~~~~~~~~~~~h~~~v~~i~~~~~~~~l~s 331 (809)
|++..+..+.. |.-.++++.|.+-. +...+ ....|-.............. ..+..+.+..-++..
T Consensus 82 w~ia~s~~i~i----~Si~~nslgFCrfS--l~~~~---k~~eqll~yp~rgsde~h~~--D~g~~tqv~i~dd~~---- 146 (323)
T KOG0322|consen 82 WTIAYSAFISI----HSIVVNSLGFCRFS--LVKKP---KNSEQLLEYPSRGSDETHKQ--DGGDTTQVQIADDSE---- 146 (323)
T ss_pred EEccCcceEEE----eeeeccccccccce--eccCC---CcchhheecCCcccchhhhh--ccCccceeEccCchh----
Confidence 99987654432 44455666665432 22211 11112111110000000000 000011111111100
Q ss_pred EECCCCEEEEEeeecccceecchhhHHHHHhhccchhhhhccCceeEEeeccccccccceeEEeecCCceEEEEEeeeee
Q 003579 332 AGQDRAFRLFSVIQDQQSRELSQRHVAKRARKLKMKEEELKLKPVIAFDCAEIRERDWCNVVTCHMDTAQAYVWRLQNFV 411 (809)
Q Consensus 332 ~~~dg~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~ 411 (809)
T Consensus 147 -------------------------------------------------------------------------------- 146 (323)
T KOG0322|consen 147 -------------------------------------------------------------------------------- 146 (323)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred ecceeeecCCCCCCCeEEEEEc-CCCC--EEEEEeCCCcEEEEECCCCceeeeeeCcccc--cccCccccEEEEEEcCCC
Q 003579 412 LGEHILRPCPENPTAVKACTIS-ACGN--FAVLGTAGGWIERFNLQSGISRGSYLDMSER--SNYAHNGEVVGVACDSTN 486 (809)
Q Consensus 412 ~~~~~~~~~~~~~~~v~~v~~s-~~g~--~l~~g~~~g~i~i~~~~~~~~~~~~~~~~~~--~~~~h~~~v~~l~~~~~~ 486 (809)
....+.+.+..+. .|+. ++++|+++|.+.+||+.++.....++..... ....|..+|.++.+.+.-
T Consensus 147 ---------~~Klgsvmc~~~~~~c~s~~lllaGyEsghvv~wd~S~~~~~~~~~~~~kv~~~~ash~qpvlsldyas~~ 217 (323)
T KOG0322|consen 147 ---------RSKLGSVMCQDKDHACGSTFLLLAGYESGHVVIWDLSTGDKIIQLPQSSKVESPNASHKQPVLSLDYASSC 217 (323)
T ss_pred ---------ccccCceeeeeccccccceEEEEEeccCCeEEEEEccCCceeeccccccccccchhhccCcceeeeechhh
Confidence 0011333333321 1332 5678899999999999988655554432221 234799999999999877
Q ss_pred CEEEEEeCcCeEEEEECCCC--ce--eeeeec-CCCeEEEEEeeCCCEEEEEeCCCeEEEEEcCCCeEEEEEecCCCCee
Q 003579 487 TLMISAGYHGDIKVWDFKGR--DL--KSRWEV-GCSLVKIVYHRVNGLLATVADDLVIRLFDVVALRMVRKFEGHTDRIT 561 (809)
Q Consensus 487 ~~l~s~~~dg~i~iwd~~~~--~~--~~~~~~-~~~i~~~~~s~~~~~la~~~~d~~I~v~d~~~~~~~~~~~~h~~~I~ 561 (809)
..=++++.+..+..|+++.. .+ ...+.. +..+..+.+-||++.+|+++.|+.||||..++.+++..+.-|.+.|+
T Consensus 218 ~rGisgga~dkl~~~Sl~~s~gslq~~~e~~lknpGv~gvrIRpD~KIlATAGWD~RiRVyswrtl~pLAVLkyHsagvn 297 (323)
T KOG0322|consen 218 DRGISGGADDKLVMYSLNHSTGSLQIRKEITLKNPGVSGVRIRPDGKILATAGWDHRIRVYSWRTLNPLAVLKYHSAGVN 297 (323)
T ss_pred cCCcCCCccccceeeeeccccCcccccceEEecCCCccceEEccCCcEEeecccCCcEEEEEeccCCchhhhhhhhccee
Confidence 77788888889999988643 22 222222 36788899999999999999999999999999999999999999999
Q ss_pred eEEECCCCCEEEEEeCCCeEEEEEc
Q 003579 562 DFCFSEDGKWLLSSGMDGSLRIWDV 586 (809)
Q Consensus 562 ~l~fspdg~~l~s~s~D~~I~vwd~ 586 (809)
+++|+||...+|.+|+|++|.+|++
T Consensus 298 ~vAfspd~~lmAaaskD~rISLWkL 322 (323)
T KOG0322|consen 298 AVAFSPDCELMAAASKDARISLWKL 322 (323)
T ss_pred EEEeCCCCchhhhccCCceEEeeec
Confidence 9999999999999999999999986
No 170
>KOG0302 consensus Ribosome Assembly protein [General function prediction only]
Probab=99.84 E-value=2.6e-19 Score=171.82 Aligned_cols=195 Identities=20% Similarity=0.329 Sum_probs=162.3
Q ss_pred CEEEEEeCCCeEEEEeCCC----------------CceEEEEcCCCCCEEEEEEcCCC-CEEEEEeCCCeEEEEEeeCCe
Q 003579 152 NKVIVGSQEGSLQLWNIST----------------KKKLYEFKGWGSSISSCVSSPAL-DVVAVGCSDGKIHVHNVRYDE 214 (809)
Q Consensus 152 ~~l~~~~~dg~i~lwd~~~----------------~~~~~~~~~~~~~I~~l~~sp~~-~~la~g~~dg~i~iwd~~~~~ 214 (809)
...++-+..|.|+|||+.. .++++++.+|...=.+++|||-. ..|++|..-+.|++|...++.
T Consensus 166 ~~~aswse~G~V~Vw~l~~~l~~l~~~~~~~~~s~~~Pl~t~~ghk~EGy~LdWSp~~~g~LlsGDc~~~I~lw~~~~g~ 245 (440)
T KOG0302|consen 166 VLCASWSENGRVQVWDLAPHLNALSEPGLEVKDSEFRPLFTFNGHKGEGYGLDWSPIKTGRLLSGDCVKGIHLWEPSTGS 245 (440)
T ss_pred ceeeeecccCcEEEEEchhhhhhhcCccccccccccCceEEecccCccceeeecccccccccccCccccceEeeeeccCc
Confidence 3556667889999999842 35789999999999999999943 358888888999999998875
Q ss_pred EE---EEEeccCCCcEEEEEEecCCCCEEEEEcCCCcEEEEECCCc-eeeeeeecccccceEEEEEecCCCEEEEEcCCC
Q 003579 215 EL---VTFTHSMRGAVTALAFSSDGQPLLASGASSGVISIWNLEKR-RLQSVIREAHDNAIISLHFFANEPVLMSASADN 290 (809)
Q Consensus 215 ~~---~~~~~~~~~~V~~l~fs~dg~~~lasg~~dg~I~iwdl~~~-~~~~~~~~~h~~~V~~l~~~~~~~~l~s~s~d~ 290 (809)
-. ..|.. |...|-.|+|||....++|+|+.||.|+|||++.+ +.......+|.+.|+.+.|+...++|++|+.||
T Consensus 246 W~vd~~Pf~g-H~~SVEDLqWSptE~~vfaScS~DgsIrIWDiRs~~~~~~~~~kAh~sDVNVISWnr~~~lLasG~DdG 324 (440)
T KOG0302|consen 246 WKVDQRPFTG-HTKSVEDLQWSPTEDGVFASCSCDGSIRIWDIRSGPKKAAVSTKAHNSDVNVISWNRREPLLASGGDDG 324 (440)
T ss_pred eeecCccccc-cccchhhhccCCccCceEEeeecCceEEEEEecCCCccceeEeeccCCceeeEEccCCcceeeecCCCc
Confidence 32 22334 58899999999998889999999999999999988 222233358999999999999999999999999
Q ss_pred cEEEEEeeCCCCCceeEEeccCCCCCCeeEEEec-CCCEEEEEECCCCEEEEEeeeccc
Q 003579 291 SIKMWIFDTTDGDPRLLRFRSGHSAPPLCIRFYA-NGRHILSAGQDRAFRLFSVIQDQQ 348 (809)
Q Consensus 291 ~i~vw~~~~~~~~~~~~~~~~~h~~~v~~i~~~~-~~~~l~s~~~dg~i~~wd~~~~~~ 348 (809)
+++|||++.-... +.+..+.-|..+|+++.|+| +...|+++|.|..|.+||+.-...
T Consensus 325 t~~iwDLR~~~~~-~pVA~fk~Hk~pItsieW~p~e~s~iaasg~D~QitiWDlsvE~D 382 (440)
T KOG0302|consen 325 TLSIWDLRQFKSG-QPVATFKYHKAPITSIEWHPHEDSVIAASGEDNQITIWDLSVEAD 382 (440)
T ss_pred eEEEEEhhhccCC-CcceeEEeccCCeeEEEeccccCceEEeccCCCcEEEEEeeccCC
Confidence 9999999876544 67778889999999999999 566888999999999999976543
No 171
>KOG1009 consensus Chromatin assembly complex 1 subunit B/CAC2 (contains WD40 repeats) [Chromatin structure and dynamics; Replication, recombination and repair]
Probab=99.83 E-value=5.7e-19 Score=171.37 Aligned_cols=292 Identities=17% Similarity=0.174 Sum_probs=214.0
Q ss_pred ccceEEEEEecCCC-EEEEEcCCCcEEEEEeeCCCCC-----ceeEEeccCCCCCCeeEEEecCCCEEEEEECCCCEEEE
Q 003579 268 DNAIISLHFFANEP-VLMSASADNSIKMWIFDTTDGD-----PRLLRFRSGHSAPPLCIRFYANGRHILSAGQDRAFRLF 341 (809)
Q Consensus 268 ~~~V~~l~~~~~~~-~l~s~s~d~~i~vw~~~~~~~~-----~~~~~~~~~h~~~v~~i~~~~~~~~l~s~~~dg~i~~w 341 (809)
..+|.++.|.++.. .++||+.|..|++|.++..... ...+..+..|...|++++|+|+|..|++|+.+|.+.+|
T Consensus 13 ~~pv~s~dfq~n~~~~laT~G~D~~iriW~v~r~~~~~~~~~V~y~s~Ls~H~~aVN~vRf~p~gelLASg~D~g~v~lW 92 (434)
T KOG1009|consen 13 HEPVYSVDFQKNSLNKLATAGGDKDIRIWKVNRSEPGGGDMKVEYLSSLSRHTRAVNVVRFSPDGELLASGGDGGEVFLW 92 (434)
T ss_pred CCceEEEEeccCcccceecccCccceeeeeeeecCCCCCceeEEEeecccCCcceeEEEEEcCCcCeeeecCCCceEEEE
Confidence 45789999998776 9999999999999988765432 34566788999999999999999999999999999999
Q ss_pred EeeecccceecchhhHHHHHhhccchhhhhccCceeEEeeccccccccceeEEeecCCceEEEEEeeeeeecceeeecCC
Q 003579 342 SVIQDQQSRELSQRHVAKRARKLKMKEEELKLKPVIAFDCAEIRERDWCNVVTCHMDTAQAYVWRLQNFVLGEHILRPCP 421 (809)
Q Consensus 342 d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~ 421 (809)
-...-... ....... ..-.. ..+.....
T Consensus 93 k~~~~~~~---~~d~e~~----------------------------------------~~ke~---------w~v~k~lr 120 (434)
T KOG1009|consen 93 KQGDVRIF---DADTEAD----------------------------------------LNKEK---------WVVKKVLR 120 (434)
T ss_pred EecCcCCc---cccchhh----------------------------------------hCccc---------eEEEEEec
Confidence 86531100 0000000 00000 11122233
Q ss_pred CCCCCeEEEEEcCCCCEEEEEeCCCcEEEEECCCCceeeeeeCcccccccCccccEEEEEEcCCCCEEEEEeCcCeEEEE
Q 003579 422 ENPTAVKACTISACGNFAVLGTAGGWIERFNLQSGISRGSYLDMSERSNYAHNGEVVGVACDSTNTLMISAGYHGDIKVW 501 (809)
Q Consensus 422 ~~~~~v~~v~~s~~g~~l~~g~~~g~i~i~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~l~s~~~dg~i~iw 501 (809)
+|...+..++|+|+++++++|+.|..+++||+..|.....+. .|...+.+++|+|.++++++-+.|...+.+
T Consensus 121 ~h~~diydL~Ws~d~~~l~s~s~dns~~l~Dv~~G~l~~~~~--------dh~~yvqgvawDpl~qyv~s~s~dr~~~~~ 192 (434)
T KOG1009|consen 121 GHRDDIYDLAWSPDSNFLVSGSVDNSVRLWDVHAGQLLAILD--------DHEHYVQGVAWDPLNQYVASKSSDRHPEGF 192 (434)
T ss_pred ccccchhhhhccCCCceeeeeeccceEEEEEeccceeEeecc--------ccccccceeecchhhhhhhhhccCccccee
Confidence 577899999999999999999999999999999999998876 899999999999999999999999877777
Q ss_pred ECCCCceeeeee--------------------c----CCCeEEEEEeeCCCEEEEEeC----CC-----eEEEEEcCC-C
Q 003579 502 DFKGRDLKSRWE--------------------V----GCSLVKIVYHRVNGLLATVAD----DL-----VIRLFDVVA-L 547 (809)
Q Consensus 502 d~~~~~~~~~~~--------------------~----~~~i~~~~~s~~~~~la~~~~----d~-----~I~v~d~~~-~ 547 (809)
.+...+...... + ..-...++|+|+|.++++... .+ ..++|+-.. .
T Consensus 193 ~~~~~~~~~~~~~~~m~~~~~~~~e~~s~rLfhDeTlksFFrRlsfTPdG~llvtPag~~~~g~~~~~n~tYvfsrk~l~ 272 (434)
T KOG1009|consen 193 SAKLKQVIKRHGLDIMPAKAFNEREGKSTRLFHDETLKSFFRRLSFTPDGSLLVTPAGLFKVGGGVFRNTSYVFSRKDLK 272 (434)
T ss_pred eeeeeeeeeeeeeeEeeecccCCCCcceeeeeecCchhhhhhhcccCCCCcEEEcccceeeeCCceeeceeEeecccccc
Confidence 766543332221 1 123445789999999987643 22 335554432 2
Q ss_pred eEEEEEecCCCCeeeEEECCC------------------CCEEEEEeCCCeEEEEEcCCccEEEEee--eCcceEEEEEc
Q 003579 548 RMVRKFEGHTDRITDFCFSED------------------GKWLLSSGMDGSLRIWDVILARQIDAIH--VDVSITALSLS 607 (809)
Q Consensus 548 ~~~~~~~~h~~~I~~l~fspd------------------g~~l~s~s~D~~I~vwd~~~~~~i~~~~--~~~~v~~l~~s 607 (809)
++...+.+...+...+.|+|- +-.++.++. ..|.|||.++-.++.... +-.+++.++|+
T Consensus 273 rP~~~lp~~~k~~lavr~~pVy~elrp~~~~~~~~~lpyrlvfaiAt~-~svyvydtq~~~P~~~v~nihy~~iTDiaws 351 (434)
T KOG1009|consen 273 RPAARLPSPKKPALAVRFSPVYYELRPLSSEKFLFVLPYRLVFAIATK-NSVYVYDTQTLEPLAVVDNIHYSAITDIAWS 351 (434)
T ss_pred CceeecCCCCcceEEEEeeeeEEEeccccccccccccccceEEEEeec-ceEEEeccccccceEEEeeeeeeeecceeec
Confidence 445566666666677776651 123445554 469999999887776653 34569999999
Q ss_pred CCCCeEEEEEeCC
Q 003579 608 PNMDVLATAHVDQ 620 (809)
Q Consensus 608 pdg~~lat~~~d~ 620 (809)
+||.+|+..+.||
T Consensus 352 ~dg~~l~vSS~DG 364 (434)
T KOG1009|consen 352 DDGSVLLVSSTDG 364 (434)
T ss_pred CCCcEEEEeccCC
Confidence 9999999999998
No 172
>KOG1524 consensus WD40 repeat-containing protein CHE-2 [General function prediction only]
Probab=99.83 E-value=2e-18 Score=172.65 Aligned_cols=437 Identities=18% Similarity=0.201 Sum_probs=271.8
Q ss_pred ccccccEEEEEEeC-CEEEEEeCCCcEEEEEcCCCccccceeeeEEcCCccccEEEEeCC-------CCCCEEEEEeCCC
Q 003579 90 SRHSAKVNLLLLFG-EHILSIDIDGNMFIWAFKGIEENLAPVGHVKLDDKFTPTCIMHPD-------TYLNKVIVGSQEG 161 (809)
Q Consensus 90 ~~h~~~V~~l~~~g-~~l~s~~~dg~i~vWd~~~~~~~~~~~~~~~~~~~~~~~~~~~p~-------~~~~~l~~~~~dg 161 (809)
..|...|.++.+.+ .-++.++.|..+.+|.-.+.+. ...+.....++.+..+ +. +....+++++.||
T Consensus 11 ~r~~e~vc~v~w~~~eei~~~~dDh~~~~~~~~~~~s----~~~~~~p~df~pt~~h-~~~rs~~~g~~~d~~~i~s~DG 85 (737)
T KOG1524|consen 11 NRNSEKVCCVDWSSNEEIYFVSDDHQIFKWSDVSRDS----VEVAKLPDDFVPTDMH-LGGRSSGGGKGSDTLLICSNDG 85 (737)
T ss_pred cccceeEEeecccccceEEEeccCceEEEeecccchh----hhhhhCCcccCCcccc-ccccccCCCCCcceEEEEcCCc
Confidence 35777777777643 4455566677777765544333 2223333333333221 21 1125689999999
Q ss_pred eEEEEeCCCCceEEEEcCCCCCEEEEEEcCCCCEEEEEeCCCeEEEEEeeCCeEEEEEeccCCCcEEEEEEecCCCCEEE
Q 003579 162 SLQLWNISTKKKLYEFKGWGSSISSCVSSPALDVVAVGCSDGKIHVHNVRYDEELVTFTHSMRGAVTALAFSSDGQPLLA 241 (809)
Q Consensus 162 ~i~lwd~~~~~~~~~~~~~~~~I~~l~~sp~~~~la~g~~dg~i~iwd~~~~~~~~~~~~~~~~~V~~l~fs~dg~~~la 241 (809)
.+.+.+ +.++.......|.++|.|-.|+|+|.-|++++.||.|++|. ++|-...++.+. ..+|.|++|.|+...++.
T Consensus 86 kf~il~-k~~rVE~sv~AH~~A~~~gRW~~dGtgLlt~GEDG~iKiWS-rsGMLRStl~Q~-~~~v~c~~W~p~S~~vl~ 162 (737)
T KOG1524|consen 86 RFVILN-KSARVERSISAHAAAISSGRWSPDGAGLLTAGEDGVIKIWS-RSGMLRSTVVQN-EESIRCARWAPNSNSIVF 162 (737)
T ss_pred eEEEec-ccchhhhhhhhhhhhhhhcccCCCCceeeeecCCceEEEEe-ccchHHHHHhhc-CceeEEEEECCCCCceEE
Confidence 999998 68888899999999999999999999999999999999998 445444444443 678999999999986776
Q ss_pred EEcCCCcEEEEECCCceeeeeeecccccceEEEEEecCCCEEEEEcCCCcEEEEEeeCCCCCceeEEeccCCCCCCeeEE
Q 003579 242 SGASSGVISIWNLEKRRLQSVIREAHDNAIISLHFFANEPVLMSASADNSIKMWIFDTTDGDPRLLRFRSGHSAPPLCIR 321 (809)
Q Consensus 242 sg~~dg~I~iwdl~~~~~~~~~~~~h~~~V~~l~~~~~~~~l~s~s~d~~i~vw~~~~~~~~~~~~~~~~~h~~~v~~i~ 321 (809)
+. .+.+.|=-+.....+-..+ +|++-|.++.|++...++++||.|-..++||-.. +.+.....|..+|++++
T Consensus 163 c~--g~h~~IKpL~~n~k~i~Wk-AHDGiiL~~~W~~~s~lI~sgGED~kfKvWD~~G-----~~Lf~S~~~ey~ITSva 234 (737)
T KOG1524|consen 163 CQ--GGHISIKPLAANSKIIRWR-AHDGLVLSLSWSTQSNIIASGGEDFRFKIWDAQG-----ANLFTSAAEEYAITSVA 234 (737)
T ss_pred ec--CCeEEEeecccccceeEEe-ccCcEEEEeecCccccceeecCCceeEEeecccC-----cccccCChhccceeeee
Confidence 54 4678887777776666666 8999999999999999999999999999996432 56777778999999999
Q ss_pred EecCCCEEEEEECCCCEEEEEeeecccceecchhhHHHHHhhccchhhhhccCceeEEeeccccccccceeEEeecCCce
Q 003579 322 FYANGRHILSAGQDRAFRLFSVIQDQQSRELSQRHVAKRARKLKMKEEELKLKPVIAFDCAEIRERDWCNVVTCHMDTAQ 401 (809)
Q Consensus 322 ~~~~~~~l~s~~~dg~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~ 401 (809)
|.|+ +.++.++.. ++|+=
T Consensus 235 ~npd-~~~~v~S~n-t~R~~------------------------------------------------------------ 252 (737)
T KOG1524|consen 235 FNPE-KDYLLWSYN-TARFS------------------------------------------------------------ 252 (737)
T ss_pred eccc-cceeeeeee-eeeec------------------------------------------------------------
Confidence 9999 555555532 33310
Q ss_pred EEEEEeeeeeecceeeecCCCCCCCeEEEEEcCCCCEEEEEeCCCcEEEEECCCCce-----eeeeeCcccc--------
Q 003579 402 AYVWRLQNFVLGEHILRPCPENPTAVKACTISACGNFAVLGTAGGWIERFNLQSGIS-----RGSYLDMSER-------- 468 (809)
Q Consensus 402 ~~~w~~~~~~~~~~~~~~~~~~~~~v~~v~~s~~g~~l~~g~~~g~i~i~~~~~~~~-----~~~~~~~~~~-------- 468 (809)
....+.|..++||+||..+++|+..|.+.+-..-..+. ..........
T Consensus 253 -------------------~p~~GSifnlsWS~DGTQ~a~gt~~G~v~~A~~ieq~l~~~n~~~t~~~r~~I~vrdV~~~ 313 (737)
T KOG1524|consen 253 -------------------SPRVGSIFNLSWSADGTQATCGTSTGQLIVAYAIEQQLVSGNLKATSKSRKSITVRDVATG 313 (737)
T ss_pred -------------------CCCccceEEEEEcCCCceeeccccCceEEEeeeehhhhhhccceeEeeccceEEeehhhhh
Confidence 01237899999999999999999999876533221111 1110000000
Q ss_pred --cccCccccEEEEEEcCCCCEEEEEeCcCeEEEEECCCCceeeeee-------------------cCCCeEE------E
Q 003579 469 --SNYAHNGEVVGVACDSTNTLMISAGYHGDIKVWDFKGRDLKSRWE-------------------VGCSLVK------I 521 (809)
Q Consensus 469 --~~~~h~~~v~~l~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~-------------------~~~~i~~------~ 521 (809)
..-.....|...+.. -.+|+++.. ..|++|.-+.....-.++ ....++- .
T Consensus 314 v~d~LE~p~rv~k~sL~--Y~hLvvaTs-~qvyiys~knwntpiiidgre~tr~lieq~ek~fli~dgsSi~lytyegR~ 390 (737)
T KOG1524|consen 314 VQDILEFPQRVVKFSLG--YGHLVVATS-LQVYIYSEKNWNTPIIIDGREDTRNLIEQGEKYFLILDGSSIWLYTYEGRL 390 (737)
T ss_pred HHHHhhCccceeeeeec--eeEEEEEec-cEEEEEecCCccCcEEEeccccchhHhhhhhhheEEecCcEEEEEEecCce
Confidence 001222334444432 123333322 345555432211000000 0011110 0
Q ss_pred EEee-----------------CCCEEEEE--eCCCeEEEEEc-CCCeEEE--EEecCCCCeeeEEECC----CCCEEEEE
Q 003579 522 VYHR-----------------VNGLLATV--ADDLVIRLFDV-VALRMVR--KFEGHTDRITDFCFSE----DGKWLLSS 575 (809)
Q Consensus 522 ~~s~-----------------~~~~la~~--~~d~~I~v~d~-~~~~~~~--~~~~h~~~I~~l~fsp----dg~~l~s~ 575 (809)
.++| ....|+.- .+...+++||. .+++... .+-.|...|..++... +.|.++--
T Consensus 391 ~~np~~Pg~~~dlL~~rtlsLandtLaird~ad~kvlhlFd~istgk~qgDgk~L~hk~~IveIAldqkG~tnDrkVAFi 470 (737)
T KOG1524|consen 391 HLNPRYPGSQIDLLTWRTLSLANDTLAIRDNADPKVLHLFDLISTGKRQGDGKSLRHKQQIVEIALDQKGLTNDRKVAFI 470 (737)
T ss_pred ecCCCCCCcccccccceeeecccceEEeecCCCCeeEEeccCCCCCcccCCccccchhhhHHHhHhhccCCCccceEEEE
Confidence 1111 12223332 23345677776 5555432 1223666677776644 44667777
Q ss_pred eCCCeEEEEEcCC-ccEEEEeeeCcceEEEEEcCCCCeEEEEEeCCCeEEEeec
Q 003579 576 GMDGSLRIWDVIL-ARQIDAIHVDVSITALSLSPNMDVLATAHVDQNGVYLWVN 628 (809)
Q Consensus 576 s~D~~I~vwd~~~-~~~i~~~~~~~~v~~l~~spdg~~lat~~~d~~~i~lW~~ 628 (809)
...+.+.|=.+.+ |+.-..++....|..++|+..-+.| .+-.|+ .+.+|-.
T Consensus 471 Dknrdl~ItsvKrfgkee~I~KiGTmVhtLawndttNiL-cglqDt-~fsVWy~ 522 (737)
T KOG1524|consen 471 DKNRDLFITSVKRFGKEEEIYKIGTMVHTLAWNDTTNIL-CGLQDT-CFSVWYY 522 (737)
T ss_pred ecCCcEEEEeehhcCchhhhhhhhhhhhhhhhcccccee-eeeccc-eEEEEEc
Confidence 7777777766654 3333444556668999998776655 444566 4889954
No 173
>KOG0307 consensus Vesicle coat complex COPII, subunit SEC31 [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.83 E-value=4.5e-20 Score=201.63 Aligned_cols=288 Identities=18% Similarity=0.305 Sum_probs=221.1
Q ss_pred EEEEEEecCCCCEEEEEc----------CCCcEEEEECCCc--e----eeeeeecccccceEEEEEecCCCE----EEEE
Q 003579 227 VTALAFSSDGQPLLASGA----------SSGVISIWNLEKR--R----LQSVIREAHDNAIISLHFFANEPV----LMSA 286 (809)
Q Consensus 227 V~~l~fs~dg~~~lasg~----------~dg~I~iwdl~~~--~----~~~~~~~~h~~~V~~l~~~~~~~~----l~s~ 286 (809)
-..++|+|++..+||+|. .+.++.||.+... . .+..+. -....+.++|.+.+.. ++.|
T Consensus 9 ta~~awSp~~~~~laagt~aq~~D~sfst~~slEifeld~~~~~~dlk~~~s~~--s~~rF~kL~W~~~g~~~~GlIaGG 86 (1049)
T KOG0307|consen 9 TATFAWSPASPPLLAAGTAAQQFDASFSTSASLEIFELDFSDESSDLKPVGSLQ--SSNRFNKLAWGSYGSHSHGLIAGG 86 (1049)
T ss_pred cceEEecCCCchhhHHHhhhhccccccccccccceeeecccCcccccccccccc--ccccceeeeecccCCCccceeecc
Confidence 346789999876777664 2445666654332 2 333332 3456889999987764 8888
Q ss_pred cCCCcEEEEEeeC--CCCCceeEEeccCCCCCCeeEEEec-CCCEEEEEECCCCEEEEEeeecccceecchhhHHHHHhh
Q 003579 287 SADNSIKMWIFDT--TDGDPRLLRFRSGHSAPPLCIRFYA-NGRHILSAGQDRAFRLFSVIQDQQSRELSQRHVAKRARK 363 (809)
Q Consensus 287 s~d~~i~vw~~~~--~~~~~~~~~~~~~h~~~v~~i~~~~-~~~~l~s~~~dg~i~~wd~~~~~~~~~~~~~~~~~~~~~ 363 (809)
..||.|.+|+.+. .+....++.....|.++|..+.|++ .++.|++|+.||.|.+||+.+........
T Consensus 87 ~edG~I~ly~p~~~~~~~~~~~la~~~~h~G~V~gLDfN~~q~nlLASGa~~geI~iWDlnn~~tP~~~~---------- 156 (1049)
T KOG0307|consen 87 LEDGNIVLYDPASIIANASEEVLATKSKHTGPVLGLDFNPFQGNLLASGADDGEILIWDLNKPETPFTPG---------- 156 (1049)
T ss_pred ccCCceEEecchhhccCcchHHHhhhcccCCceeeeeccccCCceeeccCCCCcEEEeccCCcCCCCCCC----------
Confidence 9999999998876 3555567788889999999999999 45599999999999999986533211110
Q ss_pred ccchhhhhccCceeEEeeccccccccceeEEeecCCceEEEEEeeeeeecceeeecCCCCCCCeEEEEEcCCCCEEEEEe
Q 003579 364 LKMKEEELKLKPVIAFDCAEIRERDWCNVVTCHMDTAQAYVWRLQNFVLGEHILRPCPENPTAVKACTISACGNFAVLGT 443 (809)
Q Consensus 364 ~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~v~~v~~s~~g~~l~~g~ 443 (809)
T Consensus 157 -------------------------------------------------------------------------------- 156 (1049)
T KOG0307|consen 157 -------------------------------------------------------------------------------- 156 (1049)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred CCCcEEEEECCCCceeeeeeCcccccccCccccEEEEEEcCCC-CEEEEEeCcCeEEEEECCCCceeeeeecC---CCeE
Q 003579 444 AGGWIERFNLQSGISRGSYLDMSERSNYAHNGEVVGVACDSTN-TLMISAGYHGDIKVWDFKGRDLKSRWEVG---CSLV 519 (809)
Q Consensus 444 ~~g~i~i~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~-~~l~s~~~dg~i~iwd~~~~~~~~~~~~~---~~i~ 519 (809)
.......|.+++|+..- ..|++++.+|.+.|||++..+.+-.+... ..+.
T Consensus 157 --------------------------~~~~~~eI~~lsWNrkvqhILAS~s~sg~~~iWDlr~~~pii~ls~~~~~~~~S 210 (1049)
T KOG0307|consen 157 --------------------------SQAPPSEIKCLSWNRKVSHILASGSPSGRAVIWDLRKKKPIIKLSDTPGRMHCS 210 (1049)
T ss_pred --------------------------CCCCcccceEeccchhhhHHhhccCCCCCceeccccCCCcccccccCCCcccee
Confidence 01344677888887643 56788889999999999988777666554 3478
Q ss_pred EEEEeeCCC-EEEEEeCC---CeEEEEEcCCC-eEEEEEecCCCCeeeEEECCCC-CEEEEEeCCCeEEEEEcCCccEEE
Q 003579 520 KIVYHRVNG-LLATVADD---LVIRLFDVVAL-RMVRKFEGHTDRITDFCFSEDG-KWLLSSGMDGSLRIWDVILARQID 593 (809)
Q Consensus 520 ~~~~s~~~~-~la~~~~d---~~I~v~d~~~~-~~~~~~~~h~~~I~~l~fspdg-~~l~s~s~D~~I~vwd~~~~~~i~ 593 (809)
.++|||++. .++++++| -.|.+||++.- ..++++++|...|.++.|++.+ ++|+|++.|+.|.+|+..+|+.+.
T Consensus 211 ~l~WhP~~aTql~~As~dd~~PviqlWDlR~assP~k~~~~H~~GilslsWc~~D~~lllSsgkD~~ii~wN~~tgEvl~ 290 (1049)
T KOG0307|consen 211 VLAWHPDHATQLLVASGDDSAPVIQLWDLRFASSPLKILEGHQRGILSLSWCPQDPRLLLSSGKDNRIICWNPNTGEVLG 290 (1049)
T ss_pred eeeeCCCCceeeeeecCCCCCceeEeecccccCCchhhhcccccceeeeccCCCCchhhhcccCCCCeeEecCCCceEee
Confidence 999999765 55555554 47999998753 5688899999999999999966 899999999999999999999999
Q ss_pred EeeeCcc-eEEEEEcCCCC-eEEEEEeCCCeEEEeecCcccC
Q 003579 594 AIHVDVS-ITALSLSPNMD-VLATAHVDQNGVYLWVNRCMFS 633 (809)
Q Consensus 594 ~~~~~~~-v~~l~~spdg~-~lat~~~d~~~i~lW~~~~~~~ 633 (809)
.+..... +..+.|+|... .++.++.||. |.|+.+...-.
T Consensus 291 ~~p~~~nW~fdv~w~pr~P~~~A~asfdgk-I~I~sl~~~~~ 331 (1049)
T KOG0307|consen 291 ELPAQGNWCFDVQWCPRNPSVMAAASFDGK-ISIYSLQGTDT 331 (1049)
T ss_pred ecCCCCcceeeeeecCCCcchhhhheeccc-eeeeeeecCCc
Confidence 9976544 99999999766 8888899995 99999865543
No 174
>KOG2919 consensus Guanine nucleotide-binding protein [General function prediction only]
Probab=99.82 E-value=4.9e-18 Score=159.86 Aligned_cols=280 Identities=17% Similarity=0.273 Sum_probs=206.9
Q ss_pred CccccEEEEeCCCCCCEEEEEeCCCeEEEEeCCCC-------ce-----EEEEc-CCCCCEEEEEEc-------CCCCEE
Q 003579 137 DKFTPTCIMHPDTYLNKVIVGSQEGSLQLWNISTK-------KK-----LYEFK-GWGSSISSCVSS-------PALDVV 196 (809)
Q Consensus 137 ~~~~~~~~~~p~~~~~~l~~~~~dg~i~lwd~~~~-------~~-----~~~~~-~~~~~I~~l~~s-------p~~~~l 196 (809)
..+...|.++|++ ..|++-+.|+.+.+|++... .. ..+++ .....|...+|- |+..++
T Consensus 49 ~nf~kgckWSPDG--SciL~~sedn~l~~~nlP~dlys~~~~~~~~~~~~~~~r~~eg~tvydy~wYs~M~s~qP~t~l~ 126 (406)
T KOG2919|consen 49 LNFLKGCKWSPDG--SCILSLSEDNCLNCWNLPFDLYSKKADGPLNFSKHLSYRYQEGETVYDYCWYSRMKSDQPSTNLF 126 (406)
T ss_pred hhhhccceeCCCC--ceEEeecccCeeeEEecChhhcccCCCCccccccceeEEeccCCEEEEEEeeeccccCCCcccee
Confidence 4566788999999 89999999999999998421 11 11111 124556666664 677899
Q ss_pred EEEeCCCeEEEEEeeCCeEEEEEecc-CC---CcEEEEEEecCCCCEEEEEcCCCcEEEEEC-CCceeee---eee---c
Q 003579 197 AVGCSDGKIHVHNVRYDEELVTFTHS-MR---GAVTALAFSSDGQPLLASGASSGVISIWNL-EKRRLQS---VIR---E 265 (809)
Q Consensus 197 a~g~~dg~i~iwd~~~~~~~~~~~~~-~~---~~V~~l~fs~dg~~~lasg~~dg~I~iwdl-~~~~~~~---~~~---~ 265 (809)
|+.+.+.-|++||.-+|+....+..- |. ....+++|+|||. .|++| ....|+++|+ +.|+... ++. .
T Consensus 127 a~ssr~~PIh~wdaftG~lraSy~~ydh~de~taAhsL~Fs~DGe-qlfaG-ykrcirvFdt~RpGr~c~vy~t~~~~k~ 204 (406)
T KOG2919|consen 127 AVSSRDQPIHLWDAFTGKLRASYRAYDHQDEYTAAHSLQFSPDGE-QLFAG-YKRCIRVFDTSRPGRDCPVYTTVTKGKF 204 (406)
T ss_pred eeccccCceeeeeccccccccchhhhhhHHhhhhheeEEecCCCC-eEeec-ccceEEEeeccCCCCCCcchhhhhcccc
Confidence 99999999999999999988777642 12 2567999999999 66555 5789999999 4453211 111 1
Q ss_pred ccccceEEEEEecCCC-EEEEEcCCCcEEEEEeeCCCCCceeEEeccCCCCCCeeEEEecCCCEEEEEEC-CCCEEEEEe
Q 003579 266 AHDNAIISLHFFANEP-VLMSASADNSIKMWIFDTTDGDPRLLRFRSGHSAPPLCIRFYANGRHILSAGQ-DRAFRLFSV 343 (809)
Q Consensus 266 ~h~~~V~~l~~~~~~~-~l~s~s~d~~i~vw~~~~~~~~~~~~~~~~~h~~~v~~i~~~~~~~~l~s~~~-dg~i~~wd~ 343 (809)
+..+-|.+++|+|-.. .++.++.-.++-++.-+.. +++..+.+|.+.|+.++|.++|+.|++|+. |-.|..||+
T Consensus 205 gq~giisc~a~sP~~~~~~a~gsY~q~~giy~~~~~----~pl~llggh~gGvThL~~~edGn~lfsGaRk~dkIl~WDi 280 (406)
T KOG2919|consen 205 GQKGIISCFAFSPMDSKTLAVGSYGQRVGIYNDDGR----RPLQLLGGHGGGVTHLQWCEDGNKLFSGARKDDKILCWDI 280 (406)
T ss_pred cccceeeeeeccCCCCcceeeecccceeeeEecCCC----CceeeecccCCCeeeEEeccCcCeecccccCCCeEEEEee
Confidence 3467899999999665 8999999999999866554 567778899999999999999999999885 678999999
Q ss_pred eecccceecchhhHHHHHhhccchhhhhccCceeEEeeccccccccceeEEeecCCceEEEEEeeeeeecceeeecCCCC
Q 003579 344 IQDQQSRELSQRHVAKRARKLKMKEEELKLKPVIAFDCAEIRERDWCNVVTCHMDTAQAYVWRLQNFVLGEHILRPCPEN 423 (809)
Q Consensus 344 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~ 423 (809)
+......---.++ .+.
T Consensus 281 R~~~~pv~~L~rh----------------------------------------------------------------v~~ 296 (406)
T KOG2919|consen 281 RYSRDPVYALERH----------------------------------------------------------------VGD 296 (406)
T ss_pred hhccchhhhhhhh----------------------------------------------------------------ccC
Confidence 7654321110000 011
Q ss_pred CCCeEEEEEcCCCCEEEEEeCCCcEEEEECCC-CceeeeeeCcccccccCccccEEEEEEcCCCCEEEEEeCcC
Q 003579 424 PTAVKACTISACGNFAVLGTAGGWIERFNLQS-GISRGSYLDMSERSNYAHNGEVVGVACDSTNTLMISAGYHG 496 (809)
Q Consensus 424 ~~~v~~v~~s~~g~~l~~g~~~g~i~i~~~~~-~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~l~s~~~dg 496 (809)
...-.-..+.|+|++|+.|+.+|.|++||++. |.....+. .|...+++++++|--.++++++...
T Consensus 297 TNQRI~FDld~~~~~LasG~tdG~V~vwdlk~~gn~~sv~~--------~~sd~vNgvslnP~mpilatssGqr 362 (406)
T KOG2919|consen 297 TNQRILFDLDPKGEILASGDTDGSVRVWDLKDLGNEVSVTG--------NYSDTVNGVSLNPIMPILATSSGQR 362 (406)
T ss_pred ccceEEEecCCCCceeeccCCCccEEEEecCCCCCcccccc--------cccccccceecCcccceeeeccCce
Confidence 12233456788999999999999999999998 65455544 7889999999999988888887643
No 175
>KOG4227 consensus WD40 repeat protein [General function prediction only]
Probab=99.82 E-value=2.5e-18 Score=165.36 Aligned_cols=295 Identities=15% Similarity=0.182 Sum_probs=209.9
Q ss_pred EEcCCCCCEEEEEEcCCCCEEEEEeCCCeEEEEEee------CCeEEEEEeccCCCcEEEEEEecCCCCEEEEEcCCCcE
Q 003579 176 EFKGWGSSISSCVSSPALDVVAVGCSDGKIHVHNVR------YDEELVTFTHSMRGAVTALAFSSDGQPLLASGASSGVI 249 (809)
Q Consensus 176 ~~~~~~~~I~~l~~sp~~~~la~g~~dg~i~iwd~~------~~~~~~~~~~~~~~~V~~l~fs~dg~~~lasg~~dg~I 249 (809)
.+.+|.+.|.++.||.++++||+|+.|..+++|++. +.+++.....+|...|.|++|..... .+.+|..+++|
T Consensus 51 D~~~H~GCiNAlqFS~N~~~L~SGGDD~~~~~W~~de~~~~k~~KPI~~~~~~H~SNIF~L~F~~~N~-~~~SG~~~~~V 129 (609)
T KOG4227|consen 51 DVREHTGCINALQFSHNDRFLASGGDDMHGRVWNVDELMVRKTPKPIGVMEHPHRSNIFSLEFDLENR-FLYSGERWGTV 129 (609)
T ss_pred hhhhhccccceeeeccCCeEEeecCCcceeeeechHHHHhhcCCCCceeccCccccceEEEEEccCCe-eEecCCCccee
Confidence 356899999999999999999999999999999985 45777777788889999999998777 89999999999
Q ss_pred EEEECCCceeeeeeecccc---cceEEEEEecCCCEEEEEcCCCcEEEEEeeCCCCCceeEEeccCCCCCCeeEEEec-C
Q 003579 250 SIWNLEKRRLQSVIREAHD---NAIISLHFFANEPVLMSASADNSIKMWIFDTTDGDPRLLRFRSGHSAPPLCIRFYA-N 325 (809)
Q Consensus 250 ~iwdl~~~~~~~~~~~~h~---~~V~~l~~~~~~~~l~s~s~d~~i~vw~~~~~~~~~~~~~~~~~h~~~v~~i~~~~-~ 325 (809)
...|+++.+.+.... |. +.|..+..+|-.+.|++.+.++.|.+||......... +............+.|+| .
T Consensus 130 I~HDiEt~qsi~V~~--~~~~~~~VY~m~~~P~DN~~~~~t~~~~V~~~D~Rd~~~~~~-~~~~AN~~~~F~t~~F~P~~ 206 (609)
T KOG4227|consen 130 IKHDIETKQSIYVAN--ENNNRGDVYHMDQHPTDNTLIVVTRAKLVSFIDNRDRQNPIS-LVLPANSGKNFYTAEFHPET 206 (609)
T ss_pred Eeeecccceeeeeec--ccCcccceeecccCCCCceEEEEecCceEEEEeccCCCCCCc-eeeecCCCccceeeeecCCC
Confidence 999999998888775 54 4899999999999999999999999998876542222 222334445678889999 5
Q ss_pred CCEEEEEECCCCEEEEEeeecccceecchhhHHHHHhhccchhhhhccCceeEEeeccccccccceeEEeecCCceEEEE
Q 003579 326 GRHILSAGQDRAFRLFSVIQDQQSRELSQRHVAKRARKLKMKEEELKLKPVIAFDCAEIRERDWCNVVTCHMDTAQAYVW 405 (809)
Q Consensus 326 ~~~l~s~~~dg~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~w 405 (809)
..+|++.+..+-+.+||.+..+...-... .
T Consensus 207 P~Li~~~~~~~G~~~~D~R~~~~~~~~~~-------~------------------------------------------- 236 (609)
T KOG4227|consen 207 PALILVNSETGGPNVFDRRMQARPVYQRS-------M------------------------------------------- 236 (609)
T ss_pred ceeEEeccccCCCCceeeccccchHHhhh-------c-------------------------------------------
Confidence 56788888888899999875432110000 0
Q ss_pred EeeeeeecceeeecCCCCCCCeEEEEEcCCCCEEEEEeCCCcEEEEECCCCceeeeeeCcccccccCccccEEEEEEcCC
Q 003579 406 RLQNFVLGEHILRPCPENPTAVKACTISACGNFAVLGTAGGWIERFNLQSGISRGSYLDMSERSNYAHNGEVVGVACDST 485 (809)
Q Consensus 406 ~~~~~~~~~~~~~~~~~~~~~v~~v~~s~~g~~l~~g~~~g~i~i~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~ 485 (809)
+.........-.++.|+|.|+.+..
T Consensus 237 -----------~~~L~~~~~~~M~~~~~~~G~Q~ms-------------------------------------------- 261 (609)
T KOG4227|consen 237 -----------FKGLPQENTEWMGSLWSPSGNQFMS-------------------------------------------- 261 (609)
T ss_pred -----------cccCcccchhhhheeeCCCCCeehh--------------------------------------------
Confidence 0000000011133445555554433
Q ss_pred CCEEEEEeCcCeEEEEECCCCce-eeeeec-------CCCeEEEEEeeCCCEEEEEeCCCeEEEEEcCCC----------
Q 003579 486 NTLMISAGYHGDIKVWDFKGRDL-KSRWEV-------GCSLVKIVYHRVNGLLATVADDLVIRLFDVVAL---------- 547 (809)
Q Consensus 486 ~~~l~s~~~dg~i~iwd~~~~~~-~~~~~~-------~~~i~~~~~s~~~~~la~~~~d~~I~v~d~~~~---------- 547 (809)
--....-.+||+.+..+ +....+ ...+.+++|.-|-. +++|+++-.|++|.+...
T Consensus 262 ------iRR~~~P~~~D~~S~R~~V~k~D~N~~GY~N~~T~KS~~F~~D~~-v~tGSD~~~i~~WklP~~~ds~G~~~IG 334 (609)
T KOG4227|consen 262 ------IRRGKCPLYFDFISQRCFVLKSDHNPNGYCNIKTIKSMTFIDDYT-VATGSDHWGIHIWKLPRANDSYGFTQIG 334 (609)
T ss_pred ------hhccCCCEEeeeecccceeEeccCCCCcceeeeeeeeeeeeccee-eeccCcccceEEEecCCCccccCccccC
Confidence 22222222333333111 111111 13455677765444 999999999999987421
Q ss_pred -------------eEEEEEecCCCCeeeEEECCCCCEEEEEeCCCeEEEEEc
Q 003579 548 -------------RMVRKFEGHTDRITDFCFSEDGKWLLSSGMDGSLRIWDV 586 (809)
Q Consensus 548 -------------~~~~~~~~h~~~I~~l~fspdg~~l~s~s~D~~I~vwd~ 586 (809)
+.+..++||..-++.+.|+|...+|++.+-.+.+++|.-
T Consensus 335 ~~~~~~~~~~~i~~~~~VLrGHRSv~NQVRF~~H~~~l~SSGVE~~~KlWS~ 386 (609)
T KOG4227|consen 335 HDEEEMPSEIFIEKELTVLRGHRSVPNQVRFSQHNNLLVSSGVENSFKLWSD 386 (609)
T ss_pred cchhhCchhheecceeEEEecccccccceeecCCcceEeccchhhheecccc
Confidence 234568999999999999999999999999999999963
No 176
>KOG0290 consensus Conserved WD40 repeat-containing protein AN11 [Function unknown]
Probab=99.82 E-value=7.4e-18 Score=156.39 Aligned_cols=289 Identities=17% Similarity=0.299 Sum_probs=209.1
Q ss_pred CeEEEEEeccCCCcEEEEEEe--cCCCCEEEEEc----CCCcEEEEEC--CCceeeeeeecccccceEEEEEecCCC---
Q 003579 213 DEELVTFTHSMRGAVTALAFS--SDGQPLLASGA----SSGVISIWNL--EKRRLQSVIREAHDNAIISLHFFANEP--- 281 (809)
Q Consensus 213 ~~~~~~~~~~~~~~V~~l~fs--~dg~~~lasg~----~dg~I~iwdl--~~~~~~~~~~~~h~~~V~~l~~~~~~~--- 281 (809)
.+.+..+.. .-++.++.|+ ++.+..||.|+ ..+.|.|..+ ++++.+..-...|.-+++.+.|.|+..
T Consensus 35 ~~eiy~Y~a--p~~lya~~Ws~~~~~~~rla~gS~~Ee~~Nkvqiv~ld~~s~e~~~~a~fd~~YP~tK~~wiPd~~g~~ 112 (364)
T KOG0290|consen 35 RKEIYTYNA--PWPLYAMNWSVRPDKKFRLAVGSFIEEYNNKVQIVQLDEDSGELVEDANFDHPYPVTKLMWIPDSKGVY 112 (364)
T ss_pred cceEEEecC--CCceeeeccccCCCcceeEEEeeeccccCCeeEEEEEccCCCceeccCCCCCCCCccceEecCCccccC
Confidence 445555555 3578889998 55666899988 3456666544 445555444346999999999999873
Q ss_pred --EEEEEcCCCcEEEEEeeCCCCCceeEEe-----ccCCCCCCeeEEEec-CCCEEEEEECCCCEEEEEeeecccceecc
Q 003579 282 --VLMSASADNSIKMWIFDTTDGDPRLLRF-----RSGHSAPPLCIRFYA-NGRHILSAGQDRAFRLFSVIQDQQSRELS 353 (809)
Q Consensus 282 --~l~s~s~d~~i~vw~~~~~~~~~~~~~~-----~~~h~~~v~~i~~~~-~~~~l~s~~~dg~i~~wd~~~~~~~~~~~ 353 (809)
+|+|++ ..+|+|.+...+...++... -..+.+++++..|+. +-+++.+++-|-+..+||+.++..
T Consensus 113 pdlLATs~--D~LRlWri~~ee~~~~~~~~L~~~kns~~~aPlTSFDWne~dp~~igtSSiDTTCTiWdie~~~~----- 185 (364)
T KOG0290|consen 113 PDLLATSS--DFLRLWRIGDEESRVELQSVLNNNKNSEFCAPLTSFDWNEVDPNLIGTSSIDTTCTIWDIETGVS----- 185 (364)
T ss_pred cchhhccc--CeEEEEeccCcCCceehhhhhccCcccccCCcccccccccCCcceeEeecccCeEEEEEEeeccc-----
Confidence 566554 47999988754433222222 234567888888887 777888888898888998865410
Q ss_pred hhhHHHHHhhccchhhhhccCceeEEeeccccccccceeEEeecCCceEEEEEeeeeeecceeeecCCCCCCCeEEEEEc
Q 003579 354 QRHVAKRARKLKMKEEELKLKPVIAFDCAEIRERDWCNVVTCHMDTAQAYVWRLQNFVLGEHILRPCPENPTAVKACTIS 433 (809)
Q Consensus 354 ~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~v~~v~~s 433 (809)
T Consensus 186 -------------------------------------------------------------------------------- 185 (364)
T KOG0290|consen 186 -------------------------------------------------------------------------------- 185 (364)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred CCCCEEEEEeCCCcEEEEECCCCceeeeeeCcccccccCccccEEEEEEcCCC-CEEEEEeCcCeEEEEECCCCceeeee
Q 003579 434 ACGNFAVLGTAGGWIERFNLQSGISRGSYLDMSERSNYAHNGEVVGVACDSTN-TLMISAGYHGDIKVWDFKGRDLKSRW 512 (809)
Q Consensus 434 ~~g~~l~~g~~~g~i~i~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~-~~l~s~~~dg~i~iwd~~~~~~~~~~ 512 (809)
+.....+ .+|..+|..++|...+ +.++++|.||.+|++|++..+.-..+
T Consensus 186 ----------------------~~vkTQL--------IAHDKEV~DIaf~~~s~~~FASvgaDGSvRmFDLR~leHSTII 235 (364)
T KOG0290|consen 186 ----------------------GTVKTQL--------IAHDKEVYDIAFLKGSRDVFASVGADGSVRMFDLRSLEHSTII 235 (364)
T ss_pred ----------------------cceeeEE--------EecCcceeEEEeccCccceEEEecCCCcEEEEEecccccceEE
Confidence 0011111 3899999999999865 68999999999999999876544333
Q ss_pred e---c-CCCeEEEEEeeCC-CEEEEEe-CCCeEEEEEcCCC-eEEEEEecCCCCeeeEEECCCC-CEEEEEeCCCeEEEE
Q 003579 513 E---V-GCSLVKIVYHRVN-GLLATVA-DDLVIRLFDVVAL-RMVRKFEGHTDRITDFCFSEDG-KWLLSSGMDGSLRIW 584 (809)
Q Consensus 513 ~---~-~~~i~~~~~s~~~-~~la~~~-~d~~I~v~d~~~~-~~~~~~~~h~~~I~~l~fspdg-~~l~s~s~D~~I~vw 584 (809)
- . ..+...++|++.. +++|+-. +...|.|.|++.. ..+.++++|.+.|+.++|.|.. ..|+||+.|..+.+|
T Consensus 236 YE~p~~~~pLlRLswnkqDpnymATf~~dS~~V~iLDiR~P~tpva~L~~H~a~VNgIaWaPhS~~hictaGDD~qaliW 315 (364)
T KOG0290|consen 236 YEDPSPSTPLLRLSWNKQDPNYMATFAMDSNKVVILDIRVPCTPVARLRNHQASVNGIAWAPHSSSHICTAGDDCQALIW 315 (364)
T ss_pred ecCCCCCCcceeeccCcCCchHHhhhhcCCceEEEEEecCCCcceehhhcCcccccceEecCCCCceeeecCCcceEEEE
Confidence 2 2 3678889998844 5666644 4568999999864 6789999999999999999954 689999999999999
Q ss_pred EcCCcc------EEEEeeeCcceEEEEEcC-CCCeEEEEEeCC
Q 003579 585 DVILAR------QIDAIHVDVSITALSLSP-NMDVLATAHVDQ 620 (809)
Q Consensus 585 d~~~~~------~i~~~~~~~~v~~l~~sp-dg~~lat~~~d~ 620 (809)
|+.+.- ++-.+.....|..+.|++ .+++++.+....
T Consensus 316 Dl~q~~~~~~~dPilay~a~~EVNqi~Ws~~~~Dwiai~~~kk 358 (364)
T KOG0290|consen 316 DLQQMPRENGEDPILAYTAGGEVNQIQWSSSQPDWIAICFGKK 358 (364)
T ss_pred ecccccccCCCCchhhhhccceeeeeeecccCCCEEEEEecCe
Confidence 997632 344455566799999996 677888887654
No 177
>PRK11028 6-phosphogluconolactonase; Provisional
Probab=99.81 E-value=7.5e-17 Score=169.80 Aligned_cols=272 Identities=12% Similarity=0.138 Sum_probs=182.5
Q ss_pred EEEEEcCCCcEEEEECCC-ce--eeeeeecccccceEEEEEecCCCEEEEEc-CCCcEEEEEeeCCCCCceeEEeccCCC
Q 003579 239 LLASGASSGVISIWNLEK-RR--LQSVIREAHDNAIISLHFFANEPVLMSAS-ADNSIKMWIFDTTDGDPRLLRFRSGHS 314 (809)
Q Consensus 239 ~lasg~~dg~I~iwdl~~-~~--~~~~~~~~h~~~V~~l~~~~~~~~l~s~s-~d~~i~vw~~~~~~~~~~~~~~~~~h~ 314 (809)
+.++...++.|.+||+.+ ++ .+..+. +.+....++++|++++|++++ .++.|.+|+++ .++........ ...
T Consensus 4 ~y~~~~~~~~I~~~~~~~~g~l~~~~~~~--~~~~~~~l~~spd~~~lyv~~~~~~~i~~~~~~-~~g~l~~~~~~-~~~ 79 (330)
T PRK11028 4 VYIASPESQQIHVWNLNHEGALTLLQVVD--VPGQVQPMVISPDKRHLYVGVRPEFRVLSYRIA-DDGALTFAAES-PLP 79 (330)
T ss_pred EEEEcCCCCCEEEEEECCCCceeeeeEEe--cCCCCccEEECCCCCEEEEEECCCCcEEEEEEC-CCCceEEeeee-cCC
Confidence 344556789999999964 33 344443 446678899999999887654 58899999987 33322223222 233
Q ss_pred CCCeeEEEecCCCEEEEEEC-CCCEEEEEeeecccceecchhhHHHHHhhccchhhhhccCceeEEeeccccccccceeE
Q 003579 315 APPLCIRFYANGRHILSAGQ-DRAFRLFSVIQDQQSRELSQRHVAKRARKLKMKEEELKLKPVIAFDCAEIRERDWCNVV 393 (809)
Q Consensus 315 ~~v~~i~~~~~~~~l~s~~~-dg~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~ 393 (809)
..+..+.++|+++++++++. ++.+.+|++.........
T Consensus 80 ~~p~~i~~~~~g~~l~v~~~~~~~v~v~~~~~~g~~~~~----------------------------------------- 118 (330)
T PRK11028 80 GSPTHISTDHQGRFLFSASYNANCVSVSPLDKDGIPVAP----------------------------------------- 118 (330)
T ss_pred CCceEEEECCCCCEEEEEEcCCCeEEEEEECCCCCCCCc-----------------------------------------
Confidence 45788999999998888764 778888887432110000
Q ss_pred EeecCCceEEEEEeeeeeecceeeecCCCCCCCeEEEEEcCCCCEEEEEeCCCcEEEEECCCCceeeeeeCcccccccCc
Q 003579 394 TCHMDTAQAYVWRLQNFVLGEHILRPCPENPTAVKACTISACGNFAVLGTAGGWIERFNLQSGISRGSYLDMSERSNYAH 473 (809)
Q Consensus 394 ~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~v~~v~~s~~g~~l~~g~~~g~i~i~~~~~~~~~~~~~~~~~~~~~~h 473 (809)
.... .+
T Consensus 119 -----------------------------------------------------------------~~~~---------~~ 124 (330)
T PRK11028 119 -----------------------------------------------------------------IQII---------EG 124 (330)
T ss_pred -----------------------------------------------------------------eeec---------cC
Confidence 0000 11
Q ss_pred cccEEEEEEcCCCCEEEEEe-CcCeEEEEECCCCceee-------eeecCCCeEEEEEeeCCCEEEEEeC-CCeEEEEEc
Q 003579 474 NGEVVGVACDSTNTLMISAG-YHGDIKVWDFKGRDLKS-------RWEVGCSLVKIVYHRVNGLLATVAD-DLVIRLFDV 544 (809)
Q Consensus 474 ~~~v~~l~~~~~~~~l~s~~-~dg~i~iwd~~~~~~~~-------~~~~~~~i~~~~~s~~~~~la~~~~-d~~I~v~d~ 544 (809)
.....+++++|+++++++++ .++.|.+||+.+...+. ..........++|+|+++++++++. ++.|.+||+
T Consensus 125 ~~~~~~~~~~p~g~~l~v~~~~~~~v~v~d~~~~g~l~~~~~~~~~~~~g~~p~~~~~~pdg~~lyv~~~~~~~v~v~~~ 204 (330)
T PRK11028 125 LEGCHSANIDPDNRTLWVPCLKEDRIRLFTLSDDGHLVAQEPAEVTTVEGAGPRHMVFHPNQQYAYCVNELNSSVDVWQL 204 (330)
T ss_pred CCcccEeEeCCCCCEEEEeeCCCCEEEEEEECCCCcccccCCCceecCCCCCCceEEECCCCCEEEEEecCCCEEEEEEE
Confidence 12245677888887775544 56889999987632221 1223456678999999999988876 899999999
Q ss_pred CC--C--eEEEEEecCC------CCeeeEEECCCCCEEEEEe-CCCeEEEEEcCCcc----EEEEeeeCcceEEEEEcCC
Q 003579 545 VA--L--RMVRKFEGHT------DRITDFCFSEDGKWLLSSG-MDGSLRIWDVILAR----QIDAIHVDVSITALSLSPN 609 (809)
Q Consensus 545 ~~--~--~~~~~~~~h~------~~I~~l~fspdg~~l~s~s-~D~~I~vwd~~~~~----~i~~~~~~~~v~~l~~spd 609 (809)
+. + +.+..+..+. .....+.|+|||++|+++. .+++|.+|++.... .+...........++++||
T Consensus 205 ~~~~~~~~~~~~~~~~p~~~~~~~~~~~i~~~pdg~~lyv~~~~~~~I~v~~i~~~~~~~~~~~~~~~~~~p~~~~~~~d 284 (330)
T PRK11028 205 KDPHGEIECVQTLDMMPADFSDTRWAADIHITPDGRHLYACDRTASLISVFSVSEDGSVLSFEGHQPTETQPRGFNIDHS 284 (330)
T ss_pred eCCCCCEEEEEEEecCCCcCCCCccceeEEECCCCCEEEEecCCCCeEEEEEEeCCCCeEEEeEEEeccccCCceEECCC
Confidence 73 3 3344443221 1234689999999999885 47899999996432 2333333334678999999
Q ss_pred CCeEEEEEeCCCeEEEeecC
Q 003579 610 MDVLATAHVDQNGVYLWVNR 629 (809)
Q Consensus 610 g~~lat~~~d~~~i~lW~~~ 629 (809)
|++|++++...+.|.+|++.
T Consensus 285 g~~l~va~~~~~~v~v~~~~ 304 (330)
T PRK11028 285 GKYLIAAGQKSHHISVYEID 304 (330)
T ss_pred CCEEEEEEccCCcEEEEEEc
Confidence 99999998755579999875
No 178
>KOG1188 consensus WD40 repeat protein [General function prediction only]
Probab=99.81 E-value=2.3e-18 Score=163.53 Aligned_cols=276 Identities=17% Similarity=0.264 Sum_probs=194.0
Q ss_pred CEEEEEeCCCeEEEEEeeCCeEEEEEeccCCCcEEEEEEecC-CCCEEEEEcCCCcEEEEECCCceeeeeeec-ccc-cc
Q 003579 194 DVVAVGCSDGKIHVHNVRYDEELVTFTHSMRGAVTALAFSSD-GQPLLASGASSGVISIWNLEKRRLQSVIRE-AHD-NA 270 (809)
Q Consensus 194 ~~la~g~~dg~i~iwd~~~~~~~~~~~~~~~~~V~~l~fs~d-g~~~lasg~~dg~I~iwdl~~~~~~~~~~~-~h~-~~ 270 (809)
..+|++..+|.|++||..+++.+..++.+ ...+..+.|..+ +.+.+.+|+.||+|++||++.......+.. +|. .+
T Consensus 41 ~~vav~lSngsv~lyd~~tg~~l~~fk~~-~~~~N~vrf~~~ds~h~v~s~ssDG~Vr~wD~Rs~~e~a~~~~~~~~~~~ 119 (376)
T KOG1188|consen 41 TAVAVSLSNGSVRLYDKGTGQLLEEFKGP-PATTNGVRFISCDSPHGVISCSSDGTVRLWDIRSQAESARISWTQQSGTP 119 (376)
T ss_pred eeEEEEecCCeEEEEeccchhhhheecCC-CCcccceEEecCCCCCeeEEeccCCeEEEEEeecchhhhheeccCCCCCc
Confidence 57999999999999999999999999987 778889999875 566889999999999999998866555542 343 35
Q ss_pred eEEEEEecCCCEEEEEc----CCCcEEEEEeeCCCCCceeEEeccCCCCCCeeEEEec-CCCEEEEEECCCCEEEEEeee
Q 003579 271 IISLHFFANEPVLMSAS----ADNSIKMWIFDTTDGDPRLLRFRSGHSAPPLCIRFYA-NGRHILSAGQDRAFRLFSVIQ 345 (809)
Q Consensus 271 V~~l~~~~~~~~l~s~s----~d~~i~vw~~~~~~~~~~~~~~~~~h~~~v~~i~~~~-~~~~l~s~~~dg~i~~wd~~~ 345 (809)
..+++-.-.++++++|. .|-.|.+||++..... +-.....|...|++++|+| +.+.|++|+.||-+.+||+..
T Consensus 120 f~~ld~nck~~ii~~GtE~~~s~A~v~lwDvR~~qq~--l~~~~eSH~DDVT~lrFHP~~pnlLlSGSvDGLvnlfD~~~ 197 (376)
T KOG1188|consen 120 FICLDLNCKKNIIACGTELTRSDASVVLWDVRSEQQL--LRQLNESHNDDVTQLRFHPSDPNLLLSGSVDGLVNLFDTKK 197 (376)
T ss_pred ceEeeccCcCCeEEeccccccCceEEEEEEeccccch--hhhhhhhccCcceeEEecCCCCCeEEeecccceEEeeecCC
Confidence 66666655677777775 3678999999877532 2234468999999999999 678999999999999999865
Q ss_pred cccceecchhhHHHHHhhccchhhhhccCceeEEeeccccccccceeEEeecCCceEEEEEeeeeeecceeeecCCCCCC
Q 003579 346 DQQSRELSQRHVAKRARKLKMKEEELKLKPVIAFDCAEIRERDWCNVVTCHMDTAQAYVWRLQNFVLGEHILRPCPENPT 425 (809)
Q Consensus 346 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~ 425 (809)
+.....+..
T Consensus 198 d~EeDaL~~----------------------------------------------------------------------- 206 (376)
T KOG1188|consen 198 DNEEDALLH----------------------------------------------------------------------- 206 (376)
T ss_pred CcchhhHHH-----------------------------------------------------------------------
Confidence 522111100
Q ss_pred CeEEEEEcCCCCEEEEEeCCCcEEEEECCCCceeeeeeCcccccccCccccEEEEEEcCCC-CEEEEEeCcCeEEEEECC
Q 003579 426 AVKACTISACGNFAVLGTAGGWIERFNLQSGISRGSYLDMSERSNYAHNGEVVGVACDSTN-TLMISAGYHGDIKVWDFK 504 (809)
Q Consensus 426 ~v~~v~~s~~g~~l~~g~~~g~i~i~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~-~~l~s~~~dg~i~iwd~~ 504 (809)
...|...|..+.|..++ +.+.+-+..++..+|+++
T Consensus 207 --------------------------------------------viN~~sSI~~igw~~~~ykrI~clTH~Etf~~~ele 242 (376)
T KOG1188|consen 207 --------------------------------------------VINHGSSIHLIGWLSKKYKRIMCLTHMETFAIYELE 242 (376)
T ss_pred --------------------------------------------hhcccceeeeeeeecCCcceEEEEEccCceeEEEcc
Confidence 01455566677776655 346666667777777777
Q ss_pred CCceeeeeecC-------------CCeEEEEEeeCCCEEEEEeC-CCeEEEEEc---CC---CeEEEEEec-CCCCeeeE
Q 003579 505 GRDLKSRWEVG-------------CSLVKIVYHRVNGLLATVAD-DLVIRLFDV---VA---LRMVRKFEG-HTDRITDF 563 (809)
Q Consensus 505 ~~~~~~~~~~~-------------~~i~~~~~s~~~~~la~~~~-d~~I~v~d~---~~---~~~~~~~~~-h~~~I~~l 563 (809)
.+.....++.. ..+.......+....+.++. -+...++-+ .+ .+.+..+.| |..-|.++
T Consensus 243 ~~~~~~~~~~~~~~~~d~r~~~~~dY~I~~~~~~~~~~~~l~g~~~n~~~~~~~~~~~s~~~~~~~a~l~g~~~eiVR~i 322 (376)
T KOG1188|consen 243 DGSEETWLENPDVSADDLRKEDNCDYVINEHSPGDKDTCALAGTDSNKGTIFPLVDTSSGSLLTEPAILQGGHEEIVRDI 322 (376)
T ss_pred CCChhhcccCccchhhhHHhhhhhhheeecccCCCcceEEEeccccCceeEEEeeecccccccCccccccCCcHHHHHHH
Confidence 66544333221 11111111223445555544 444444433 22 345666776 67788999
Q ss_pred EECCCCCEEEEEeCCCeEEEEEcC
Q 003579 564 CFSEDGKWLLSSGMDGSLRIWDVI 587 (809)
Q Consensus 564 ~fspdg~~l~s~s~D~~I~vwd~~ 587 (809)
.|...+..+.||++||.+.+|..+
T Consensus 323 ~~~~~~~~l~TGGEDG~l~~Wk~~ 346 (376)
T KOG1188|consen 323 LFDVKNDVLYTGGEDGLLQAWKVE 346 (376)
T ss_pred hhhcccceeeccCCCceEEEEecC
Confidence 999889999999999999999974
No 179
>KOG1310 consensus WD40 repeat protein [General function prediction only]
Probab=99.81 E-value=1.7e-18 Score=173.73 Aligned_cols=251 Identities=15% Similarity=0.165 Sum_probs=174.0
Q ss_pred eEEEEcCCCCCEEEEEEcCCCCEEEEEeCCCeEEEEEeeCCeEEEEEeccCCCcEEEEEEecC-CCCEEEEEcCCCcEEE
Q 003579 173 KLYEFKGWGSSISSCVSSPALDVVAVGCSDGKIHVHNVRYDEELVTFTHSMRGAVTALAFSSD-GQPLLASGASSGVISI 251 (809)
Q Consensus 173 ~~~~~~~~~~~I~~l~~sp~~~~la~g~~dg~i~iwd~~~~~~~~~~~~~~~~~V~~l~fs~d-g~~~lasg~~dg~I~i 251 (809)
+...+.||.+.|.|++|+.+|.+|++|+.|-.+.|||.-..+.+..+..+|...|.++.|-|. +..++++|..|..|++
T Consensus 42 lE~eL~GH~GCVN~LeWn~dG~lL~SGSDD~r~ivWd~~~~KllhsI~TgHtaNIFsvKFvP~tnnriv~sgAgDk~i~l 121 (758)
T KOG1310|consen 42 LEAELTGHTGCVNCLEWNADGELLASGSDDTRLIVWDPFEYKLLHSISTGHTANIFSVKFVPYTNNRIVLSGAGDKLIKL 121 (758)
T ss_pred hhhhhccccceecceeecCCCCEEeecCCcceEEeecchhcceeeeeecccccceeEEeeeccCCCeEEEeccCcceEEE
Confidence 445688999999999999999999999999999999999999999999999999999999985 3348999999999999
Q ss_pred EECCCc----------eeeeeeecccccceEEEEEecCC-CEEEEEcCCCcEEEEEeeCCCC------CceeEEeccCCC
Q 003579 252 WNLEKR----------RLQSVIREAHDNAIISLHFFANE-PVLMSASADNSIKMWIFDTTDG------DPRLLRFRSGHS 314 (809)
Q Consensus 252 wdl~~~----------~~~~~~~~~h~~~V~~l~~~~~~-~~l~s~s~d~~i~vw~~~~~~~------~~~~~~~~~~h~ 314 (809)
+|+... ....... .|...|..++-.|++ ..+.+++.||+++.+|+..... .+..+......-
T Consensus 122 fdl~~~~~~~~d~~~~~~~~~~~-cht~rVKria~~p~~PhtfwsasEDGtirQyDiREph~c~p~~~~~~~l~ny~~~l 200 (758)
T KOG1310|consen 122 FDLDSSKEGGMDHGMEETTRCWS-CHTDRVKRIATAPNGPHTFWSASEDGTIRQYDIREPHVCNPDEDCPSILVNYNPQL 200 (758)
T ss_pred EecccccccccccCccchhhhhh-hhhhhhhheecCCCCCceEEEecCCcceeeecccCCccCCccccccHHHHHhchhh
Confidence 999852 2233333 799999999999999 5888999999999999976421 111112222223
Q ss_pred CCCeeEEEec-CCCEEEEEECCCCEEEEEeeecccceecchhhHHHHHhhccchhhhhccCceeEEeeccccccccceeE
Q 003579 315 APPLCIRFYA-NGRHILSAGQDRAFRLFSVIQDQQSRELSQRHVAKRARKLKMKEEELKLKPVIAFDCAEIRERDWCNVV 393 (809)
Q Consensus 315 ~~v~~i~~~~-~~~~l~s~~~dg~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~ 393 (809)
-...|+..+| +..+|++|+.|-..++||.+.......-. ......+|.
T Consensus 201 ielk~ltisp~rp~~laVGgsdpfarLYD~Rr~lks~~s~--------------~~~~~~pp~----------------- 249 (758)
T KOG1310|consen 201 IELKCLTISPSRPYYLAVGGSDPFARLYDRRRVLKSFRSD--------------GTMNTCPPK----------------- 249 (758)
T ss_pred heeeeeeecCCCCceEEecCCCchhhhhhhhhhccCCCCC--------------ccccCCCCc-----------------
Confidence 4567899999 66789999999999999964321111000 000000110
Q ss_pred EeecCCceEEEEEeeeeeecceeeecCCCCCCCeEEEEEcCCCCEEEEEeCCCcEEEEECCCCceeeee
Q 003579 394 TCHMDTAQAYVWRLQNFVLGEHILRPCPENPTAVKACTISACGNFAVLGTAGGWIERFNLQSGISRGSY 462 (809)
Q Consensus 394 ~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~v~~v~~s~~g~~l~~g~~~g~i~i~~~~~~~~~~~~ 462 (809)
+.+.++-|...........+ ......++-++|+|+|.-+++....-.|++||+..++....+
T Consensus 250 ----~~~cv~yf~p~hlkn~~gn~---~~~~~~~t~vtfnpNGtElLvs~~gEhVYlfdvn~~~~~~~y 311 (758)
T KOG1310|consen 250 ----DCRCVRYFSPGHLKNSQGNL---DRYITCCTYVTFNPNGTELLVSWGGEHVYLFDVNEDKSPTPY 311 (758)
T ss_pred ----ccchhheecCccccCccccc---ccceeeeEEEEECCCCcEEEEeeCCeEEEEEeecCCCCceee
Confidence 00011111100000000000 000134677899999999999999999999999776654433
No 180
>PRK11028 6-phosphogluconolactonase; Provisional
Probab=99.81 E-value=8.6e-17 Score=169.33 Aligned_cols=294 Identities=14% Similarity=0.168 Sum_probs=176.8
Q ss_pred EEeCCCeEEEEEeeC-Ce--EEEEEeccCCCcEEEEEEecCCCCEEEEEcCCCcEEEEECCC-ceeeeeeecccccceEE
Q 003579 198 VGCSDGKIHVHNVRY-DE--ELVTFTHSMRGAVTALAFSSDGQPLLASGASSGVISIWNLEK-RRLQSVIREAHDNAIIS 273 (809)
Q Consensus 198 ~g~~dg~i~iwd~~~-~~--~~~~~~~~~~~~V~~l~fs~dg~~~lasg~~dg~I~iwdl~~-~~~~~~~~~~h~~~V~~ 273 (809)
+...++.|.+|++.+ ++ .+..+.. .+....++++|+++.+++++..++.|.+|++.. ++....-.....+....
T Consensus 7 ~~~~~~~I~~~~~~~~g~l~~~~~~~~--~~~~~~l~~spd~~~lyv~~~~~~~i~~~~~~~~g~l~~~~~~~~~~~p~~ 84 (330)
T PRK11028 7 ASPESQQIHVWNLNHEGALTLLQVVDV--PGQVQPMVISPDKRHLYVGVRPEFRVLSYRIADDGALTFAAESPLPGSPTH 84 (330)
T ss_pred EcCCCCCEEEEEECCCCceeeeeEEec--CCCCccEEECCCCCEEEEEECCCCcEEEEEECCCCceEEeeeecCCCCceE
Confidence 336689999999974 33 3444433 356788999999994444445688999999973 43321111123345778
Q ss_pred EEEecCCCEEEEEcC-CCcEEEEEeeCCCCCceeEEeccCCCCCCeeEEEecCCCEEEEEE-CCCCEEEEEeeeccccee
Q 003579 274 LHFFANEPVLMSASA-DNSIKMWIFDTTDGDPRLLRFRSGHSAPPLCIRFYANGRHILSAG-QDRAFRLFSVIQDQQSRE 351 (809)
Q Consensus 274 l~~~~~~~~l~s~s~-d~~i~vw~~~~~~~~~~~~~~~~~h~~~v~~i~~~~~~~~l~s~~-~dg~i~~wd~~~~~~~~~ 351 (809)
++|+|+++++++++. ++.|.+|+++........+.... +...+.+++++|+++++++++ .++.|.+||+.+......
T Consensus 85 i~~~~~g~~l~v~~~~~~~v~v~~~~~~g~~~~~~~~~~-~~~~~~~~~~~p~g~~l~v~~~~~~~v~v~d~~~~g~l~~ 163 (330)
T PRK11028 85 ISTDHQGRFLFSASYNANCVSVSPLDKDGIPVAPIQIIE-GLEGCHSANIDPDNRTLWVPCLKEDRIRLFTLSDDGHLVA 163 (330)
T ss_pred EEECCCCCEEEEEEcCCCeEEEEEECCCCCCCCceeecc-CCCcccEeEeCCCCCEEEEeeCCCCEEEEEEECCCCcccc
Confidence 999999998887764 88999999875332222233222 334577889999999886555 568899999864321110
Q ss_pred cchhhHHHHHhhccchhhhhccCceeEEeeccccccccceeEEeecCCceEEEEEeeeeeecceeeecCCCCCCCeEEEE
Q 003579 352 LSQRHVAKRARKLKMKEEELKLKPVIAFDCAEIRERDWCNVVTCHMDTAQAYVWRLQNFVLGEHILRPCPENPTAVKACT 431 (809)
Q Consensus 352 ~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~v~~v~ 431 (809)
... .....
T Consensus 164 ~~~------------------------------------------------------------~~~~~------------ 171 (330)
T PRK11028 164 QEP------------------------------------------------------------AEVTT------------ 171 (330)
T ss_pred cCC------------------------------------------------------------Cceec------------
Confidence 000 00000
Q ss_pred EcCCCCEEEEEeCCCcEEEEECCCCceeeeeeCcccccccCccccEEEEEEcCCCCEEEEEeC-cCeEEEEECCC--Cce
Q 003579 432 ISACGNFAVLGTAGGWIERFNLQSGISRGSYLDMSERSNYAHNGEVVGVACDSTNTLMISAGY-HGDIKVWDFKG--RDL 508 (809)
Q Consensus 432 ~s~~g~~l~~g~~~g~i~i~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~l~s~~~-dg~i~iwd~~~--~~~ 508 (809)
........++|+|++++++++.. ++.|.+|++.. ++.
T Consensus 172 ----------------------------------------~~g~~p~~~~~~pdg~~lyv~~~~~~~v~v~~~~~~~~~~ 211 (330)
T PRK11028 172 ----------------------------------------VEGAGPRHMVFHPNQQYAYCVNELNSSVDVWQLKDPHGEI 211 (330)
T ss_pred ----------------------------------------CCCCCCceEEECCCCCEEEEEecCCCEEEEEEEeCCCCCE
Confidence 00011234455555555544443 55555555542 211
Q ss_pred --eeeeec-------CCCeEEEEEeeCCCEEEEEeC-CCeEEEEEcCCCeEEEEEecCC---CCeeeEEECCCCCEEEEE
Q 003579 509 --KSRWEV-------GCSLVKIVYHRVNGLLATVAD-DLVIRLFDVVALRMVRKFEGHT---DRITDFCFSEDGKWLLSS 575 (809)
Q Consensus 509 --~~~~~~-------~~~i~~~~~s~~~~~la~~~~-d~~I~v~d~~~~~~~~~~~~h~---~~I~~l~fspdg~~l~s~ 575 (809)
+..+.. ......+.++|++++++++.. ++.|.+|++.......++.+|. .....+.|+|||++|+++
T Consensus 212 ~~~~~~~~~p~~~~~~~~~~~i~~~pdg~~lyv~~~~~~~I~v~~i~~~~~~~~~~~~~~~~~~p~~~~~~~dg~~l~va 291 (330)
T PRK11028 212 ECVQTLDMMPADFSDTRWAADIHITPDGRHLYACDRTASLISVFSVSEDGSVLSFEGHQPTETQPRGFNIDHSGKYLIAA 291 (330)
T ss_pred EEEEEEecCCCcCCCCccceeEEECCCCCEEEEecCCCCeEEEEEEeCCCCeEEEeEEEeccccCCceEECCCCCEEEEE
Confidence 111110 112346889999999999865 7899999986543222222221 245689999999999987
Q ss_pred eC-CCeEEEEEcC--CccE--EEEeeeCcceEEEEE
Q 003579 576 GM-DGSLRIWDVI--LARQ--IDAIHVDVSITALSL 606 (809)
Q Consensus 576 s~-D~~I~vwd~~--~~~~--i~~~~~~~~v~~l~~ 606 (809)
.. +++|.+|++. +|.+ +..+.......+++|
T Consensus 292 ~~~~~~v~v~~~~~~~g~l~~~~~~~~g~~P~~~~~ 327 (330)
T PRK11028 292 GQKSHHISVYEIDGETGLLTELGRYAVGQGPMWVSV 327 (330)
T ss_pred EccCCcEEEEEEcCCCCcEEEccccccCCCceEEEE
Confidence 75 8999999874 4443 333433333555554
No 181
>PF02239 Cytochrom_D1: Cytochrome D1 heme domain; PDB: 1NNO_B 1HZU_A 1N15_B 1N50_A 1GJQ_A 1BL9_B 1NIR_B 1N90_B 1HZV_A 1AOQ_A ....
Probab=99.81 E-value=5.9e-17 Score=169.31 Aligned_cols=334 Identities=17% Similarity=0.198 Sum_probs=211.4
Q ss_pred CEEE-EEeCCCeEEEEeCCCCceEEEEcCCCCCEEEEEEcCCCCEEEEEeCCCeEEEEEeeCCeEEEEEeccCCCcEEEE
Q 003579 152 NKVI-VGSQEGSLQLWNISTKKKLYEFKGWGSSISSCVSSPALDVVAVGCSDGKIHVHNVRYDEELVTFTHSMRGAVTAL 230 (809)
Q Consensus 152 ~~l~-~~~~dg~i~lwd~~~~~~~~~~~~~~~~I~~l~~sp~~~~la~g~~dg~i~iwd~~~~~~~~~~~~~~~~~V~~l 230 (809)
+.++ +-..+|.|.+.|..+.+.+..+......-..+.++||++++++++.||.|.++|+.+++.+.++..+ ....++
T Consensus 6 ~l~~V~~~~~~~v~viD~~t~~~~~~i~~~~~~h~~~~~s~Dgr~~yv~~rdg~vsviD~~~~~~v~~i~~G--~~~~~i 83 (369)
T PF02239_consen 6 NLFYVVERGSGSVAVIDGATNKVVARIPTGGAPHAGLKFSPDGRYLYVANRDGTVSVIDLATGKVVATIKVG--GNPRGI 83 (369)
T ss_dssp GEEEEEEGGGTEEEEEETTT-SEEEEEE-STTEEEEEE-TT-SSEEEEEETTSEEEEEETTSSSEEEEEE-S--SEEEEE
T ss_pred cEEEEEecCCCEEEEEECCCCeEEEEEcCCCCceeEEEecCCCCEEEEEcCCCeEEEEECCcccEEEEEecC--CCcceE
Confidence 3443 4556899999999999999999875555556789999999999999999999999999999999875 567899
Q ss_pred EEecCCCCEEEEEcCCCcEEEEECCCceeeeeeecc------cccceEEEEEecCCCEEEEEcCC-CcEEEEEeeCCCCC
Q 003579 231 AFSSDGQPLLASGASSGVISIWNLEKRRLQSVIREA------HDNAIISLHFFANEPVLMSASAD-NSIKMWIFDTTDGD 303 (809)
Q Consensus 231 ~fs~dg~~~lasg~~dg~I~iwdl~~~~~~~~~~~~------h~~~V~~l~~~~~~~~l~s~s~d-~~i~vw~~~~~~~~ 303 (809)
++++||++++++....+.+.++|.++.+.+..+..+ ....+.++..++..+.++..-.| + ++|-++..+..
T Consensus 84 ~~s~DG~~~~v~n~~~~~v~v~D~~tle~v~~I~~~~~~~~~~~~Rv~aIv~s~~~~~fVv~lkd~~--~I~vVdy~d~~ 161 (369)
T PF02239_consen 84 AVSPDGKYVYVANYEPGTVSVIDAETLEPVKTIPTGGMPVDGPESRVAAIVASPGRPEFVVNLKDTG--EIWVVDYSDPK 161 (369)
T ss_dssp EE--TTTEEEEEEEETTEEEEEETTT--EEEEEE--EE-TTTS---EEEEEE-SSSSEEEEEETTTT--EEEEEETTTSS
T ss_pred EEcCCCCEEEEEecCCCceeEeccccccceeecccccccccccCCCceeEEecCCCCEEEEEEccCC--eEEEEEecccc
Confidence 999999955555557899999999999998888732 23467888889999866665554 5 45655544433
Q ss_pred ceeEEeccCCCCCCeeEEEecCCCEEEEEE-CCCCEEEEEeeecccceecchhhHHHHHhhccchhhhhccCceeEEeec
Q 003579 304 PRLLRFRSGHSAPPLCIRFYANGRHILSAG-QDRAFRLFSVIQDQQSRELSQRHVAKRARKLKMKEEELKLKPVIAFDCA 382 (809)
Q Consensus 304 ~~~~~~~~~h~~~v~~i~~~~~~~~l~s~~-~dg~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~ 382 (809)
....... .....+....|+|++++++.+. .+..+.++|..+.+....+..+.
T Consensus 162 ~~~~~~i-~~g~~~~D~~~dpdgry~~va~~~sn~i~viD~~~~k~v~~i~~g~-------------------------- 214 (369)
T PF02239_consen 162 NLKVTTI-KVGRFPHDGGFDPDGRYFLVAANGSNKIAVIDTKTGKLVALIDTGK-------------------------- 214 (369)
T ss_dssp CEEEEEE-E--TTEEEEEE-TTSSEEEEEEGGGTEEEEEETTTTEEEEEEE-SS--------------------------
T ss_pred ccceeee-cccccccccccCcccceeeecccccceeEEEeeccceEEEEeeccc--------------------------
Confidence 2222222 3445678899999999887754 45567777755433221111000
Q ss_pred cccccccceeEEeecCCceEEEEEeeeeeecceeeecCCCCCCCeEEEEEcCCCCEEEEEeCCCcEEEEECCCCceeeee
Q 003579 383 EIRERDWCNVVTCHMDTAQAYVWRLQNFVLGEHILRPCPENPTAVKACTISACGNFAVLGTAGGWIERFNLQSGISRGSY 462 (809)
Q Consensus 383 ~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~v~~v~~s~~g~~l~~g~~~g~i~i~~~~~~~~~~~~ 462 (809)
. .|+.+... +
T Consensus 215 ---------------------------~-----------p~~~~~~~--------------------------------~ 224 (369)
T PF02239_consen 215 ---------------------------K-----------PHPGPGAN--------------------------------F 224 (369)
T ss_dssp ---------------------------S-----------BEETTEEE--------------------------------E
T ss_pred ---------------------------c-----------cccccccc--------------------------------c
Confidence 0 00000000 0
Q ss_pred eCcccccccCcc--ccEEEEEEcCCCCEEEEEeCcCeEEEEECCCCceeeeeecCCCeEEEEEeeCCCEEEEE----eCC
Q 003579 463 LDMSERSNYAHN--GEVVGVACDSTNTLMISAGYHGDIKVWDFKGRDLKSRWEVGCSLVKIVYHRVNGLLATV----ADD 536 (809)
Q Consensus 463 ~~~~~~~~~~h~--~~v~~l~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~i~~~~~s~~~~~la~~----~~d 536 (809)
.|. +.+.... ..+...++.-....+.+||..+.+.++++...+.-..+..||+++++.+. .+.
T Consensus 225 ---------php~~g~vw~~~--~~~~~~~~~ig~~~v~v~d~~~wkvv~~I~~~G~glFi~thP~s~~vwvd~~~~~~~ 293 (369)
T PF02239_consen 225 ---------PHPGFGPVWATS--GLGYFAIPLIGTDPVSVHDDYAWKVVKTIPTQGGGLFIKTHPDSRYVWVDTFLNPDA 293 (369)
T ss_dssp ---------EETTTEEEEEEE--BSSSSEEEEEE--TTT-STTTBTSEEEEEE-SSSS--EE--TT-SEEEEE-TT-SSH
T ss_pred ---------cCCCcceEEeec--cccceecccccCCccccchhhcCeEEEEEECCCCcceeecCCCCccEEeeccCCCCC
Confidence 111 1222221 22333333333346668999999999999988666889999999999998 456
Q ss_pred CeEEEEEcCCCeEEEEEecCC-CCeeeEEECCCCCEEEEEe--CCCeEEEEEcCCccEEEEeee
Q 003579 537 LVIRLFDVVALRMVRKFEGHT-DRITDFCFSEDGKWLLSSG--MDGSLRIWDVILARQIDAIHV 597 (809)
Q Consensus 537 ~~I~v~d~~~~~~~~~~~~h~-~~I~~l~fspdg~~l~s~s--~D~~I~vwd~~~~~~i~~~~~ 597 (809)
..|.++|.++.+.+.++.... .++..+.|++||+++..+. .++.|.|||..+.+++..+..
T Consensus 294 ~~v~viD~~tl~~~~~i~~~~~~~~~h~ef~~dG~~v~vS~~~~~~~i~v~D~~Tl~~~~~i~~ 357 (369)
T PF02239_consen 294 DTVQVIDKKTLKVVKTITPGPGKRVVHMEFNPDGKEVWVSVWDGNGAIVVYDAKTLKEKKRIPV 357 (369)
T ss_dssp T-EEEEECCGTEEEE-HHHHHT--EEEEEE-TTSSEEEEEEE--TTEEEEEETTTTEEEEEEE-
T ss_pred ceEEEEECcCcceeEEEeccCCCcEeccEECCCCCEEEEEEecCCCEEEEEECCCcEEEEEEEe
Confidence 899999999999888876332 3589999999999766544 344799999999999998873
No 182
>KOG0307 consensus Vesicle coat complex COPII, subunit SEC31 [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.80 E-value=2.7e-19 Score=195.63 Aligned_cols=275 Identities=19% Similarity=0.273 Sum_probs=207.8
Q ss_pred eCCCcEEEEEcCCC--ccccceeeeEEcCCccccEEEEeCCCCC--CEEEEEeCCCeEEEEeCCCC------ceEEEEcC
Q 003579 110 DIDGNMFIWAFKGI--EENLAPVGHVKLDDKFTPTCIMHPDTYL--NKVIVGSQEGSLQLWNISTK------KKLYEFKG 179 (809)
Q Consensus 110 ~~dg~i~vWd~~~~--~~~~~~~~~~~~~~~~~~~~~~~p~~~~--~~l~~~~~dg~i~lwd~~~~------~~~~~~~~ 179 (809)
+.+.++-+|.++-. +....++..+.....| ...+|.+.+.- ..|+.|..||.|.+||...- ..+.+...
T Consensus 36 st~~slEifeld~~~~~~dlk~~~s~~s~~rF-~kL~W~~~g~~~~GlIaGG~edG~I~ly~p~~~~~~~~~~~la~~~~ 114 (1049)
T KOG0307|consen 36 STSASLEIFELDFSDESSDLKPVGSLQSSNRF-NKLAWGSYGSHSHGLIAGGLEDGNIVLYDPASIIANASEEVLATKSK 114 (1049)
T ss_pred ccccccceeeecccCccccccccccccccccc-eeeeecccCCCccceeeccccCCceEEecchhhccCcchHHHhhhcc
Confidence 34556666655432 2212234444434444 34555554421 24888999999999998642 35667789
Q ss_pred CCCCEEEEEEcCCCC-EEEEEeCCCeEEEEEeeCCeEEEEE-eccCCCcEEEEEEecCCCCEEEEEcCCCcEEEEECCCc
Q 003579 180 WGSSISSCVSSPALD-VVAVGCSDGKIHVHNVRYDEELVTF-THSMRGAVTALAFSSDGQPLLASGASSGVISIWNLEKR 257 (809)
Q Consensus 180 ~~~~I~~l~~sp~~~-~la~g~~dg~i~iwd~~~~~~~~~~-~~~~~~~V~~l~fs~dg~~~lasg~~dg~I~iwdl~~~ 257 (809)
|.+.|..+.|++... +||+|+.||.|.|||+.+-+.-.+. .....+.|.+++|+..-.++|++++.+|.+.|||++..
T Consensus 115 h~G~V~gLDfN~~q~nlLASGa~~geI~iWDlnn~~tP~~~~~~~~~~eI~~lsWNrkvqhILAS~s~sg~~~iWDlr~~ 194 (1049)
T KOG0307|consen 115 HTGPVLGLDFNPFQGNLLASGADDGEILIWDLNKPETPFTPGSQAPPSEIKCLSWNRKVSHILASGSPSGRAVIWDLRKK 194 (1049)
T ss_pred cCCceeeeeccccCCceeeccCCCCcEEEeccCCcCCCCCCCCCCCcccceEeccchhhhHHhhccCCCCCceeccccCC
Confidence 999999999999765 9999999999999999986665555 23246789999999988889999999999999999999
Q ss_pred eeeeeeecccc--cceEEEEEecCCC-EEEEEcCC---CcEEEEEeeCCCCCceeEEeccCCCCCCeeEEEec-CCCEEE
Q 003579 258 RLQSVIREAHD--NAIISLHFFANEP-VLMSASAD---NSIKMWIFDTTDGDPRLLRFRSGHSAPPLCIRFYA-NGRHIL 330 (809)
Q Consensus 258 ~~~~~~~~~h~--~~V~~l~~~~~~~-~l~s~s~d---~~i~vw~~~~~~~~~~~~~~~~~h~~~v~~i~~~~-~~~~l~ 330 (809)
+.+-.+. .|. ..+..++|+|+.. .+++++.| -.|.+||++..+ ..++.+.+|...|.++.|++ |.++++
T Consensus 195 ~pii~ls-~~~~~~~~S~l~WhP~~aTql~~As~dd~~PviqlWDlR~as---sP~k~~~~H~~GilslsWc~~D~~lll 270 (1049)
T KOG0307|consen 195 KPIIKLS-DTPGRMHCSVLAWHPDHATQLLVASGDDSAPVIQLWDLRFAS---SPLKILEGHQRGILSLSWCPQDPRLLL 270 (1049)
T ss_pred Ccccccc-cCCCccceeeeeeCCCCceeeeeecCCCCCceeEeecccccC---CchhhhcccccceeeeccCCCCchhhh
Confidence 7776666 333 3488999999875 66666654 368999988765 35566689999999999999 558999
Q ss_pred EEECCCCEEEEEeeecccceecchhhHHHHHhhccchhhhhccCceeEEeeccccccccceeEEeecCCceEEEEEeeee
Q 003579 331 SAGQDRAFRLFSVIQDQQSRELSQRHVAKRARKLKMKEEELKLKPVIAFDCAEIRERDWCNVVTCHMDTAQAYVWRLQNF 410 (809)
Q Consensus 331 s~~~dg~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~ 410 (809)
+++.|+.+.+|+..+++...++..
T Consensus 271 SsgkD~~ii~wN~~tgEvl~~~p~-------------------------------------------------------- 294 (1049)
T KOG0307|consen 271 SSGKDNRIICWNPNTGEVLGELPA-------------------------------------------------------- 294 (1049)
T ss_pred cccCCCCeeEecCCCceEeeecCC--------------------------------------------------------
Confidence 999999999999988766655532
Q ss_pred eecceeeecCCCCCCCeEEEEEcCCC-CEEEEEeCCCcEEEEECCCCc
Q 003579 411 VLGEHILRPCPENPTAVKACTISACG-NFAVLGTAGGWIERFNLQSGI 457 (809)
Q Consensus 411 ~~~~~~~~~~~~~~~~v~~v~~s~~g-~~l~~g~~~g~i~i~~~~~~~ 457 (809)
....+..+.|.|.. ..+++++-+|.|.||+++++.
T Consensus 295 ------------~~nW~fdv~w~pr~P~~~A~asfdgkI~I~sl~~~~ 330 (1049)
T KOG0307|consen 295 ------------QGNWCFDVQWCPRNPSVMAAASFDGKISIYSLQGTD 330 (1049)
T ss_pred ------------CCcceeeeeecCCCcchhhhheeccceeeeeeecCC
Confidence 12567778888865 488889999999999998765
No 183
>KOG0303 consensus Actin-binding protein Coronin, contains WD40 repeats [Cytoskeleton]
Probab=99.79 E-value=9.2e-18 Score=162.18 Aligned_cols=233 Identities=15% Similarity=0.208 Sum_probs=183.6
Q ss_pred EEccccccEEEEEE---eCCEEEEEeCCCcEEEEEcCCCccc---cceeeeEEcCCccccEEEEeCCCCCCEEEEEeCCC
Q 003579 88 TWSRHSAKVNLLLL---FGEHILSIDIDGNMFIWAFKGIEEN---LAPVGHVKLDDKFTPTCIMHPDTYLNKVIVGSQEG 161 (809)
Q Consensus 88 ~~~~h~~~V~~l~~---~g~~l~s~~~dg~i~vWd~~~~~~~---~~~~~~~~~~~~~~~~~~~~p~~~~~~l~~~~~dg 161 (809)
...||+++|..+.| +...|+|||.|.+|.||++....+. ..++..+.+|...+-.+++||... |.|++++.|+
T Consensus 76 ~v~GHt~~vLDi~w~PfnD~vIASgSeD~~v~vW~IPe~~l~~~ltepvv~L~gH~rrVg~V~wHPtA~-NVLlsag~Dn 154 (472)
T KOG0303|consen 76 LVCGHTAPVLDIDWCPFNDCVIASGSEDTKVMVWQIPENGLTRDLTEPVVELYGHQRRVGLVQWHPTAP-NVLLSAGSDN 154 (472)
T ss_pred CccCccccccccccCccCCceeecCCCCceEEEEECCCcccccCcccceEEEeecceeEEEEeecccch-hhHhhccCCc
Confidence 37899999999996 5788999999999999999876553 345778888999999999999875 8899999999
Q ss_pred eEEEEeCCCCceEEEEcCCCCCEEEEEEcCCCCEEEEEeCCCeEEEEEeeCCeEEEEEeccCCCcEEEEEEecCCCCEEE
Q 003579 162 SLQLWNISTKKKLYEFKGWGSSISSCVSSPALDVVAVGCSDGKIHVHNVRYDEELVTFTHSMRGAVTALAFSSDGQPLLA 241 (809)
Q Consensus 162 ~i~lwd~~~~~~~~~~~~~~~~I~~l~~sp~~~~la~g~~dg~i~iwd~~~~~~~~~~~~~~~~~V~~l~fs~dg~~~la 241 (809)
+|.+||+.+|+.+.++. |..-|.++.|+-+|.++++++.|..|+|||.++++.+..-..|....-.-.-|..+|. ++.
T Consensus 155 ~v~iWnv~tgeali~l~-hpd~i~S~sfn~dGs~l~TtckDKkvRv~dpr~~~~v~e~~~heG~k~~Raifl~~g~-i~t 232 (472)
T KOG0303|consen 155 TVSIWNVGTGEALITLD-HPDMVYSMSFNRDGSLLCTTCKDKKVRVIDPRRGTVVSEGVAHEGAKPARAIFLASGK-IFT 232 (472)
T ss_pred eEEEEeccCCceeeecC-CCCeEEEEEeccCCceeeeecccceeEEEcCCCCcEeeecccccCCCcceeEEeccCc-eee
Confidence 99999999999999988 9999999999999999999999999999999999999988666555667778888998 666
Q ss_pred EEc---CCCcEEEEECCCceeeeee-ecccccceEEEEEecCCCEEEEEc-CCCcEEEEEeeCCCCCceeEEeccCCCCC
Q 003579 242 SGA---SSGVISIWNLEKRRLQSVI-REAHDNAIISLHFFANEPVLMSAS-ADNSIKMWIFDTTDGDPRLLRFRSGHSAP 316 (809)
Q Consensus 242 sg~---~dg~I~iwdl~~~~~~~~~-~~~h~~~V~~l~~~~~~~~l~s~s-~d~~i~vw~~~~~~~~~~~~~~~~~h~~~ 316 (809)
+|- .+..+.+||..+-..-..+ .....++|.---|.+|..++..+| .|+.||.|.+.....-...+..+ ....+
T Consensus 233 TGfsr~seRq~aLwdp~nl~eP~~~~elDtSnGvl~PFyD~dt~ivYl~GKGD~~IRYyEit~d~P~~hyln~f-~S~ep 311 (472)
T KOG0303|consen 233 TGFSRMSERQIALWDPNNLEEPIALQELDTSNGVLLPFYDPDTSIVYLCGKGDSSIRYFEITNEPPFVHYLNTF-SSKEP 311 (472)
T ss_pred eccccccccceeccCcccccCcceeEEeccCCceEEeeecCCCCEEEEEecCCcceEEEEecCCCceeEEeccc-ccCCc
Confidence 664 5789999987665322222 113456777777888888776655 59999999886553222222222 22344
Q ss_pred CeeEEEec
Q 003579 317 PLCIRFYA 324 (809)
Q Consensus 317 v~~i~~~~ 324 (809)
-..+.|.|
T Consensus 312 QRG~g~mP 319 (472)
T KOG0303|consen 312 QRGMGFMP 319 (472)
T ss_pred cccccccc
Confidence 55666666
No 184
>KOG0642 consensus Cell-cycle nuclear protein, contains WD-40 repeats [Cell cycle control, cell division, chromosome partitioning]
Probab=99.79 E-value=1.5e-18 Score=175.41 Aligned_cols=271 Identities=21% Similarity=0.340 Sum_probs=200.2
Q ss_pred eeecccccceEEEEEecCCCEEEEEcCCCcEEEEEeeC----CCCCceeEEeccCCCCCCeeEEEecCCCEEEEEECCCC
Q 003579 262 VIREAHDNAIISLHFFANEPVLMSASADNSIKMWIFDT----TDGDPRLLRFRSGHSAPPLCIRFYANGRHILSAGQDRA 337 (809)
Q Consensus 262 ~~~~~h~~~V~~l~~~~~~~~l~s~s~d~~i~vw~~~~----~~~~~~~~~~~~~h~~~v~~i~~~~~~~~l~s~~~dg~ 337 (809)
++. .|...|+.+.|.+..+.|++++.||.+++|++.. .......+.++.+|.+||.|+++.++++++++|+.||+
T Consensus 289 tl~-s~~d~ir~l~~~~sep~lit~sed~~lk~WnLqk~~~s~~~~~epi~tfraH~gPVl~v~v~~n~~~~ysgg~Dg~ 367 (577)
T KOG0642|consen 289 TLR-SHDDCIRALAFHPSEPVLITASEDGTLKLWNLQKAKKSAEKDVEPILTFRAHEGPVLCVVVPSNGEHCYSGGIDGT 367 (577)
T ss_pred eee-cchhhhhhhhcCCCCCeEEEeccccchhhhhhcccCCccccceeeeEEEecccCceEEEEecCCceEEEeeccCce
Confidence 444 7889999999999999999999999999999832 22345667788999999999999999999999999999
Q ss_pred EEEEEeeecccceecchhhHHHHHhhccchhhhhccCceeEEeeccccccccceeEEeecCCceEEEEEeeeeeecceee
Q 003579 338 FRLFSVIQDQQSRELSQRHVAKRARKLKMKEEELKLKPVIAFDCAEIRERDWCNVVTCHMDTAQAYVWRLQNFVLGEHIL 417 (809)
Q Consensus 338 i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~ 417 (809)
|+.|++.......... .. ....
T Consensus 368 I~~w~~p~n~dp~ds~-------------------------------------------------------dp---~vl~ 389 (577)
T KOG0642|consen 368 IRCWNLPPNQDPDDSY-------------------------------------------------------DP---SVLS 389 (577)
T ss_pred eeeeccCCCCCccccc-------------------------------------------------------Cc---chhc
Confidence 9999875221110000 00 0111
Q ss_pred ecCCCCCCCeEEEEEcCCCCEEEEEeCCCcEEEEECCCCceeeeeeCcccccccCccccEEEEEEcCCC-CEEEEEeCcC
Q 003579 418 RPCPENPTAVKACTISACGNFAVLGTAGGWIERFNLQSGISRGSYLDMSERSNYAHNGEVVGVACDSTN-TLMISAGYHG 496 (809)
Q Consensus 418 ~~~~~~~~~v~~v~~s~~g~~l~~g~~~g~i~i~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~-~~l~s~~~dg 496 (809)
....+|...+..+++|+...+|+.++.||+++.|+...... ..+.. ....+.-..+.+-... ...++...-+
T Consensus 390 ~~l~Ghtdavw~l~~s~~~~~Llscs~DgTvr~w~~~~~~~-~~f~~------~~e~g~Plsvd~~ss~~a~~~~s~~~~ 462 (577)
T KOG0642|consen 390 GTLLGHTDAVWLLALSSTKDRLLSCSSDGTVRLWEPTEESP-CTFGE------PKEHGYPLSVDRTSSRPAHSLASFRFG 462 (577)
T ss_pred cceeccccceeeeeecccccceeeecCCceEEeeccCCcCc-cccCC------ccccCCcceEeeccchhHhhhhhcccc
Confidence 22336778999999999999999999999999999987766 33321 1112223344443222 1222222223
Q ss_pred eEEEEECCCCceeeeeecC--------CCeEEEEEeeCCCEEEEEeCCCeEEEEEcCCCeEEEEEecCCCCeeeEEECCC
Q 003579 497 DIKVWDFKGRDLKSRWEVG--------CSLVKIVYHRVNGLLATVADDLVIRLFDVVALRMVRKFEGHTDRITDFCFSED 568 (809)
Q Consensus 497 ~i~iwd~~~~~~~~~~~~~--------~~i~~~~~s~~~~~la~~~~d~~I~v~d~~~~~~~~~~~~h~~~I~~l~fspd 568 (809)
.-.++++.....+..+... ..+..+..+|.+.+.+++..|+.|+++|..+++++.....|...++++++.|+
T Consensus 463 ~~~~~~~ev~s~~~~~~s~~~~~~~~~~~in~vVs~~~~~~~~~~hed~~Ir~~dn~~~~~l~s~~a~~~svtslai~~n 542 (577)
T KOG0642|consen 463 YTSIDDMEVVSDLLIFESSASPGPRRYPQINKVVSHPTADITFTAHEDRSIRFFDNKTGKILHSMVAHKDSVTSLAIDPN 542 (577)
T ss_pred cccchhhhhhhheeeccccCCCcccccCccceEEecCCCCeeEecccCCceecccccccccchheeeccceecceeecCC
Confidence 3333444444333333221 46778899999999999999999999999999999999999999999999999
Q ss_pred CCEEEEEeCCCeEEEEEcCCccEEEEeeeC
Q 003579 569 GKWLLSSGMDGSLRIWDVILARQIDAIHVD 598 (809)
Q Consensus 569 g~~l~s~s~D~~I~vwd~~~~~~i~~~~~~ 598 (809)
|-+|++++.||.+++|.+....++.....+
T Consensus 543 g~~l~s~s~d~sv~l~kld~k~~~~es~~~ 572 (577)
T KOG0642|consen 543 GPYLMSGSHDGSVRLWKLDVKTCVLESTAH 572 (577)
T ss_pred CceEEeecCCceeehhhccchheeeccccc
Confidence 999999999999999999877776655433
No 185
>KOG0649 consensus WD40 repeat protein [General function prediction only]
Probab=99.79 E-value=1.7e-16 Score=143.59 Aligned_cols=269 Identities=17% Similarity=0.274 Sum_probs=192.7
Q ss_pred CCcEEEEEeCCeEEEEECCe---EEEEEC-----------Cee-EEEEccccccEEEEEEeCCEEEEEeCCCcEEEEEcC
Q 003579 57 KKIRALASYRDYTFAAYGNH---IAVVKR-----------AHQ-VATWSRHSAKVNLLLLFGEHILSIDIDGNMFIWAFK 121 (809)
Q Consensus 57 ~~I~~la~~~~~~~~a~g~~---i~vw~~-----------~~~-~~~~~~h~~~V~~l~~~g~~l~s~~~dg~i~vWd~~ 121 (809)
..|-+-|++|.++|++.|+. |.+... ++. +...++|.++|..+.|..++|++|+ ||.|+=|...
T Consensus 11 ~tvf~qa~sp~~~~l~agn~~G~iav~sl~sl~s~sa~~~gk~~iv~eqahdgpiy~~~f~d~~Lls~g-dG~V~gw~W~ 89 (325)
T KOG0649|consen 11 NTVFAQAISPSKQYLFAGNLFGDIAVLSLKSLDSGSAEPPGKLKIVPEQAHDGPIYYLAFHDDFLLSGG-DGLVYGWEWN 89 (325)
T ss_pred HHHHHHhhCCcceEEEEecCCCeEEEEEehhhhccccCCCCCcceeeccccCCCeeeeeeehhheeecc-CceEEEeeeh
Confidence 34556678899999888875 777752 222 3336899999999999999999998 7999999987
Q ss_pred CCccc---------cceeeeEEcCCccccEEEEeCCCCCCEEEEEeCCCeEEEEeCCCCceEEEEcCCCCCEEEEEEcCC
Q 003579 122 GIEEN---------LAPVGHVKLDDKFTPTCIMHPDTYLNKVIVGSQEGSLQLWNISTKKKLYEFKGWGSSISSCVSSPA 192 (809)
Q Consensus 122 ~~~~~---------~~~~~~~~~~~~~~~~~~~~p~~~~~~l~~~~~dg~i~lwd~~~~~~~~~~~~~~~~I~~l~~sp~ 192 (809)
..+.. ..|...-...-..+..+.+.|.. |-|++++.|+.++-||+++|+..+++++|+..|.+++--..
T Consensus 90 E~~es~~~K~lwe~~~P~~~~~~evPeINam~ldP~e--nSi~~AgGD~~~y~~dlE~G~i~r~~rGHtDYvH~vv~R~~ 167 (325)
T KOG0649|consen 90 EEEESLATKRLWEVKIPMQVDAVEVPEINAMWLDPSE--NSILFAGGDGVIYQVDLEDGRIQREYRGHTDYVHSVVGRNA 167 (325)
T ss_pred hhhhhccchhhhhhcCccccCcccCCccceeEeccCC--CcEEEecCCeEEEEEEecCCEEEEEEcCCcceeeeeeeccc
Confidence 65431 11111111122334566677877 77888889999999999999999999999999999998666
Q ss_pred CCEEEEEeCCCeEEEEEeeCCeEEEEEecc---------CCCcEEEEEEecCCCCEEEEEcCCCcEEEEECCCceeeeee
Q 003579 193 LDVVAVGCSDGKIHVHNVRYDEELVTFTHS---------MRGAVTALAFSSDGQPLLASGASSGVISIWNLEKRRLQSVI 263 (809)
Q Consensus 193 ~~~la~g~~dg~i~iwd~~~~~~~~~~~~~---------~~~~V~~l~fs~dg~~~lasg~~dg~I~iwdl~~~~~~~~~ 263 (809)
...+.+|+.||++++||.++++.+..+... ....|.+++-+.| .|+.|+ ...+.+|+++..+...++
T Consensus 168 ~~qilsG~EDGtvRvWd~kt~k~v~~ie~yk~~~~lRp~~g~wigala~~ed---WlvCGg-Gp~lslwhLrsse~t~vf 243 (325)
T KOG0649|consen 168 NGQILSGAEDGTVRVWDTKTQKHVSMIEPYKNPNLLRPDWGKWIGALAVNED---WLVCGG-GPKLSLWHLRSSESTCVF 243 (325)
T ss_pred CcceeecCCCccEEEEeccccceeEEeccccChhhcCcccCceeEEEeccCc---eEEecC-CCceeEEeccCCCceEEE
Confidence 667999999999999999999988877532 1235777776655 677665 568999999999888888
Q ss_pred ecccccceEEEEEecCCCEEEEEcCCCcEEEEEeeCCCCCceeEEeccCCCCCCeeEEEecCC-CEEEEEECCCCEEEE
Q 003579 264 REAHDNAIISLHFFANEPVLMSASADNSIKMWIFDTTDGDPRLLRFRSGHSAPPLCIRFYANG-RHILSAGQDRAFRLF 341 (809)
Q Consensus 264 ~~~h~~~V~~l~~~~~~~~l~s~s~d~~i~vw~~~~~~~~~~~~~~~~~h~~~v~~i~~~~~~-~~l~s~~~dg~i~~w 341 (809)
. -...+..+.|..+ .+++++..+.+.-|.+... +.......+...++..+.... ++|-.++....+.++
T Consensus 244 p--ipa~v~~v~F~~d--~vl~~G~g~~v~~~~l~Gv-----l~a~ip~~s~~c~s~s~~~~p~k~~s~ag~s~~~~i~ 313 (325)
T KOG0649|consen 244 P--IPARVHLVDFVDD--CVLIGGEGNHVQSYTLNGV-----LQANIPVESTACYSASWQTSPIKFISIAGFSNKLHIL 313 (325)
T ss_pred e--cccceeEeeeecc--eEEEeccccceeeeeeccE-----EEEeccCCccceeeecccCCceEEEEecccceeeeee
Confidence 6 5677888888755 6788888889999966432 222222333334444444333 233344555555544
No 186
>KOG1272 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification]
Probab=99.79 E-value=3.5e-19 Score=175.46 Aligned_cols=297 Identities=16% Similarity=0.235 Sum_probs=229.4
Q ss_pred CCCeeEEEecCCCEEEEEECCCCEEEEEeeecccceecchhhHHHHHhhccchhhhhccCceeEEeeccccccccceeEE
Q 003579 315 APPLCIRFYANGRHILSAGQDRAFRLFSVIQDQQSRELSQRHVAKRARKLKMKEEELKLKPVIAFDCAEIRERDWCNVVT 394 (809)
Q Consensus 315 ~~v~~i~~~~~~~~l~s~~~dg~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~ 394 (809)
..+..+.|+.+|++++.++..|.+..+|..+.....++...
T Consensus 130 FGPY~~~ytrnGrhlllgGrKGHlAa~Dw~t~~L~~Ei~v~--------------------------------------- 170 (545)
T KOG1272|consen 130 FGPYHLDYTRNGRHLLLGGRKGHLAAFDWVTKKLHFEINVM--------------------------------------- 170 (545)
T ss_pred cCCeeeeecCCccEEEecCCccceeeeecccceeeeeeehh---------------------------------------
Confidence 45788999999999999999999999999888776665431
Q ss_pred eecCCceEEEEEeeeeeecceeeecCCCCCCCeEEEEEcCCCCEEEEEeCCCcEEEEECCCCceeeeeeCcccccccCcc
Q 003579 395 CHMDTAQAYVWRLQNFVLGEHILRPCPENPTAVKACTISACGNFAVLGTAGGWIERFNLQSGISRGSYLDMSERSNYAHN 474 (809)
Q Consensus 395 ~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~v~~v~~s~~g~~l~~g~~~g~i~i~~~~~~~~~~~~~~~~~~~~~~h~ 474 (809)
..|..+.|-.+.++++++ ....+++||-.. ..+..+ ...
T Consensus 171 ------------------------------Etv~Dv~~LHneq~~AVA-QK~y~yvYD~~G-tElHCl---------k~~ 209 (545)
T KOG1272|consen 171 ------------------------------ETVRDVTFLHNEQFFAVA-QKKYVYVYDNNG-TELHCL---------KRH 209 (545)
T ss_pred ------------------------------hhhhhhhhhcchHHHHhh-hhceEEEecCCC-cEEeeh---------hhc
Confidence 456666777777777765 556788888553 333333 234
Q ss_pred ccEEEEEEcCCCCEEEEEeCcCeEEEEECCCCceeeeeecC-CCeEEEEEeeCCCEEEEEeCCCeEEEEEcCCCeEEEEE
Q 003579 475 GEVVGVACDSTNTLMISAGYHGDIKVWDFKGRDLKSRWEVG-CSLVKIVYHRVNGLLATVADDLVIRLFDVVALRMVRKF 553 (809)
Q Consensus 475 ~~v~~l~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~-~~i~~~~~s~~~~~la~~~~d~~I~v~d~~~~~~~~~~ 553 (809)
..|..+.|-|..-+|++++..|.++.-|+.+|+++..+... +.+..|+-+|-+..+-+|..+|+|.+|.....+++..+
T Consensus 210 ~~v~rLeFLPyHfLL~~~~~~G~L~Y~DVS~GklVa~~~t~~G~~~vm~qNP~NaVih~GhsnGtVSlWSP~skePLvKi 289 (545)
T KOG1272|consen 210 IRVARLEFLPYHFLLVAASEAGFLKYQDVSTGKLVASIRTGAGRTDVMKQNPYNAVIHLGHSNGTVSLWSPNSKEPLVKI 289 (545)
T ss_pred CchhhhcccchhheeeecccCCceEEEeechhhhhHHHHccCCccchhhcCCccceEEEcCCCceEEecCCCCcchHHHH
Confidence 67889999999999999999999999999999999999776 78889999999999999999999999999999999999
Q ss_pred ecCCCCeeeEEECCCCCEEEEEeCCCeEEEEEcCCccEEEEeeeCcceEEEEEcCCCCeEEEEEeCCCeEEEeec-----
Q 003579 554 EGHTDRITDFCFSEDGKWLLSSGMDGSLRIWDVILARQIDAIHVDVSITALSLSPNMDVLATAHVDQNGVYLWVN----- 628 (809)
Q Consensus 554 ~~h~~~I~~l~fspdg~~l~s~s~D~~I~vwd~~~~~~i~~~~~~~~v~~l~~spdg~~lat~~~d~~~i~lW~~----- 628 (809)
-.|.++|.++++.++|+|++|++.|..++|||+..-..+..+..+.+...+++|..| +||.+-.+ .|.+|.-
T Consensus 290 LcH~g~V~siAv~~~G~YMaTtG~Dr~~kIWDlR~~~ql~t~~tp~~a~~ls~Sqkg-lLA~~~G~--~v~iw~d~~~~s 366 (545)
T KOG1272|consen 290 LCHRGPVSSIAVDRGGRYMATTGLDRKVKIWDLRNFYQLHTYRTPHPASNLSLSQKG-LLALSYGD--HVQIWKDALKGS 366 (545)
T ss_pred HhcCCCcceEEECCCCcEEeecccccceeEeeeccccccceeecCCCcccccccccc-ceeeecCC--eeeeehhhhcCC
Confidence 999999999999999999999999999999999998888888777789999999777 45554444 4999952
Q ss_pred -----------------CcccCCCCCCccCCCCCcceeecCCCccCcCCccCCCCCCCCCccCCCCCCCCCCCCCccccc
Q 003579 629 -----------------RCMFSGDSNIDSYASGKEIVSVKMPSVSSVEGCQDENSSQPDVHRTDRVPKDSFGLPTFKQQI 691 (809)
Q Consensus 629 -----------------~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 691 (809)
.-.|+|......+.....+.++.+|+.....-+..++.-- +.... -.|.+.-.-.+.|.
T Consensus 367 ~~~~~pYm~H~~~~~V~~l~FcP~EDvLGIGH~~G~tsilVPGsGePN~Ds~e~nPf---etrKQ-RqE~EVr~LLeKip 442 (545)
T KOG1272|consen 367 GHGETPYMNHRCGGPVEDLRFCPYEDVLGIGHAGGITSILVPGSGEPNYDSLEDNPF---ETRKQ-RQEKEVRSLLEKIP 442 (545)
T ss_pred CCCCcchhhhccCcccccceeccHHHeeeccccCCceeEeccCCCCCCcchhccCcc---hhhhH-HhHHHHHHHHhhCC
Confidence 2345666666666777788889999985554433322110 00000 00112223356688
Q ss_pred cCceecc
Q 003579 692 PDLVTLS 698 (809)
Q Consensus 692 ~~l~tls 698 (809)
++||+|-
T Consensus 443 pElIsLd 449 (545)
T KOG1272|consen 443 PELISLD 449 (545)
T ss_pred hHhEEec
Confidence 8899886
No 187
>KOG4497 consensus Uncharacterized conserved protein WDR8, contains WD repeats [General function prediction only]
Probab=99.78 E-value=6.1e-17 Score=152.80 Aligned_cols=395 Identities=12% Similarity=0.115 Sum_probs=252.4
Q ss_pred ccEEEEEEeCCEEEEEeCCCcEEEEEcCCCccccceeeeEEcCCccccEEEEeCCCCCCEEEEEeCCCeEEEEeCCCCce
Q 003579 94 AKVNLLLLFGEHILSIDIDGNMFIWAFKGIEENLAPVGHVKLDDKFTPTCIMHPDTYLNKVIVGSQEGSLQLWNISTKKK 173 (809)
Q Consensus 94 ~~V~~l~~~g~~l~s~~~dg~i~vWd~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~l~~~~~dg~i~lwd~~~~~~ 173 (809)
++..+++++|+|+++++ +-.+.|-|..+.+..... .. -.-+.-..+..+.- -.|.+.+.++.|++|++...+-
T Consensus 11 ~~~c~fSp~g~yiAs~~-~yrlviRd~~tlq~~qlf----~c-ldki~yieW~ads~-~ilC~~yk~~~vqvwsl~Qpew 83 (447)
T KOG4497|consen 11 NPFCSFSPCGNYIASLS-RYRLVIRDSETLQLHQLF----LC-LDKIVYIEWKADSC-HILCVAYKDPKVQVWSLVQPEW 83 (447)
T ss_pred CCceeECCCCCeeeeee-eeEEEEeccchhhHHHHH----HH-HHHhhheeeeccce-eeeeeeeccceEEEEEeeccee
Confidence 44667778999999998 558888888776652110 00 01112233444441 3455667888999999988888
Q ss_pred EEEEcCCCCCEEEEEEcCCCCE-EEEEeCCCeEEEEEeeCCeEEEEEeccCCCcEEEEEEecCCCCEEEEEcCCCc---E
Q 003579 174 LYEFKGWGSSISSCVSSPALDV-VAVGCSDGKIHVHNVRYDEELVTFTHSMRGAVTALAFSSDGQPLLASGASSGV---I 249 (809)
Q Consensus 174 ~~~~~~~~~~I~~l~~sp~~~~-la~g~~dg~i~iwd~~~~~~~~~~~~~~~~~V~~l~fs~dg~~~lasg~~dg~---I 249 (809)
...+.....++.++.|||||+. |.+..-+-+|.+|.+.+.+.... .+.+..+..++|+|||+ +.+..+.-.. +
T Consensus 84 ~ckIdeg~agls~~~WSPdgrhiL~tseF~lriTVWSL~t~~~~~~--~~pK~~~kg~~f~~dg~-f~ai~sRrDCkdyv 160 (447)
T KOG4497|consen 84 YCKIDEGQAGLSSISWSPDGRHILLTSEFDLRITVWSLNTQKGYLL--PHPKTNVKGYAFHPDGQ-FCAILSRRDCKDYV 160 (447)
T ss_pred EEEeccCCCcceeeeECCCcceEeeeecceeEEEEEEeccceeEEe--cccccCceeEEECCCCc-eeeeeecccHHHHH
Confidence 8888888899999999999954 55556688999999987665433 22356779999999999 7777764311 2
Q ss_pred EEEECCCceeeeeeecccccceEEEEEecCCCEEEEEcCCCcEEEEEeeCCCCCceeEEeccCCCCCCeeEEEecCCCEE
Q 003579 250 SIWNLEKRRLQSVIREAHDNAIISLHFFANEPVLMSASADNSIKMWIFDTTDGDPRLLRFRSGHSAPPLCIRFYANGRHI 329 (809)
Q Consensus 250 ~iwdl~~~~~~~~~~~~h~~~V~~l~~~~~~~~l~s~s~d~~i~vw~~~~~~~~~~~~~~~~~h~~~v~~i~~~~~~~~l 329 (809)
.|..-..-.+++.+. -.+-..+.+.|+|||..|+.-..-=.-+++.+ .-.-.+..+.|+|.+++|
T Consensus 161 ~i~~c~~W~ll~~f~-~dT~DltgieWsPdg~~laVwd~~Leykv~aY--------------e~~lG~k~v~wsP~~qfl 225 (447)
T KOG4497|consen 161 QISSCKAWILLKEFK-LDTIDLTGIEWSPDGNWLAVWDNVLEYKVYAY--------------ERGLGLKFVEWSPCNQFL 225 (447)
T ss_pred HHHhhHHHHHHHhcC-CCcccccCceECCCCcEEEEecchhhheeeee--------------eeccceeEEEeccccceE
Confidence 222112223333343 34456789999999987765322111111111 112357889999999999
Q ss_pred EEEECCCCEEEEEeeecccceecchhhH---------HHHH-hhccchhhhhccCceeEEeeccccccccceeEEeecCC
Q 003579 330 LSAGQDRAFRLFSVIQDQQSRELSQRHV---------AKRA-RKLKMKEEELKLKPVIAFDCAEIRERDWCNVVTCHMDT 399 (809)
Q Consensus 330 ~s~~~dg~i~~wd~~~~~~~~~~~~~~~---------~~~~-~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~ 399 (809)
+.|+.|+.+|+.+-.+-+...++..... .+.. +........+.+.| .+ +-+|...
T Consensus 226 avGsyD~~lrvlnh~tWk~f~eflhl~s~~dp~~~~~~ke~~~~~ql~~~cLsf~p--------~~-------~~a~~~~ 290 (447)
T KOG4497|consen 226 AVGSYDQMLRVLNHFTWKPFGEFLHLCSYHDPTLHLLEKETFSIVQLLHHCLSFTP--------TD-------LEAHIWE 290 (447)
T ss_pred EeeccchhhhhhceeeeeehhhhccchhccCchhhhhhhhhcchhhhcccccccCC--------Cc-------cccCccc
Confidence 9999999999877655544443321110 0000 00000111111111 00 0011111
Q ss_pred ceEEEEEeeeeeecceeeecCCCC---CCCeEEEEEcCCCCEEEEEeCC--CcEEEEECCCCceeeeeeCcccccccCcc
Q 003579 400 AQAYVWRLQNFVLGEHILRPCPEN---PTAVKACTISACGNFAVLGTAG--GWIERFNLQSGISRGSYLDMSERSNYAHN 474 (809)
Q Consensus 400 ~~~~~w~~~~~~~~~~~~~~~~~~---~~~v~~v~~s~~g~~l~~g~~~--g~i~i~~~~~~~~~~~~~~~~~~~~~~h~ 474 (809)
..-..|.........+.+++.... .-.+.-++|++|..++++-.++ +.+-+||++..+....+ ...
T Consensus 291 ~se~~YE~~~~pv~~~~lkp~tD~pnPk~g~g~lafs~Ds~y~aTrnd~~PnalW~Wdlq~l~l~avL---------iQk 361 (447)
T KOG4497|consen 291 ESETIYEQQMTPVKVHKLKPPTDFPNPKCGAGKLAFSCDSTYAATRNDKYPNALWLWDLQNLKLHAVL---------IQK 361 (447)
T ss_pred cchhhhhhhhcceeeecccCCCCCCCcccccceeeecCCceEEeeecCCCCceEEEEechhhhhhhhh---------hhc
Confidence 111122222222333444433322 3457789999999999987665 68899999988776655 356
Q ss_pred ccEEEEEEcCCCCEEEEEeCcCeEEEEECCCCceeeeeecCCCeEEEEEeeCCCEEEEEeCCC
Q 003579 475 GEVVGVACDSTNTLMISAGYHGDIKVWDFKGRDLKSRWEVGCSLVKIVYHRVNGLLATVADDL 537 (809)
Q Consensus 475 ~~v~~l~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~i~~~~~s~~~~~la~~~~d~ 537 (809)
.+|....|+|....|+.+.....+++|.......+..-..+-.|..+.|+-+|..++..+.|.
T Consensus 362 ~piraf~WdP~~prL~vctg~srLY~W~psg~~~V~vP~~GF~i~~l~W~~~g~~i~l~~kDa 424 (447)
T KOG4497|consen 362 HPIRAFEWDPGRPRLVVCTGKSRLYFWAPSGPRVVGVPKKGFNIQKLQWLQPGEFIVLCGKDA 424 (447)
T ss_pred cceeEEEeCCCCceEEEEcCCceEEEEcCCCceEEecCCCCceeeeEEecCCCcEEEEEcCCc
Confidence 789999999999989888888889999988766666555567899999999999998888775
No 188
>KOG0322 consensus G-protein beta subunit-like protein GNB1L, contains WD repeats [General function prediction only]
Probab=99.77 E-value=1.6e-17 Score=152.21 Aligned_cols=291 Identities=17% Similarity=0.224 Sum_probs=200.0
Q ss_pred eeEEEEccccccEEEEEEe-CCEEEEEeCCCcEEEEEcCCCccccceeeeEEc-CCccccEEEEeCCCCCCEEEEEeCCC
Q 003579 84 HQVATWSRHSAKVNLLLLF-GEHILSIDIDGNMFIWAFKGIEENLAPVGHVKL-DDKFTPTCIMHPDTYLNKVIVGSQEG 161 (809)
Q Consensus 84 ~~~~~~~~h~~~V~~l~~~-g~~l~s~~~dg~i~vWd~~~~~~~~~~~~~~~~-~~~~~~~~~~~p~~~~~~l~~~~~dg 161 (809)
.....+++|.+.|+++.|+ ..+|.++...|.|++|++++... ...+.. +..++...-.-|. ..+.+-+.|+
T Consensus 5 dP~fvLRp~~~~v~s~~fqa~~rL~sg~~~G~V~~w~lqt~r~----~~~~r~~g~~~it~lq~~p~---d~l~tqgRd~ 77 (323)
T KOG0322|consen 5 DPFFVLRPHSSSVTSVLFQANERLMSGLSVGIVKMWVLQTERD----LPLIRLFGRLFITNLQSIPN---DSLDTQGRDP 77 (323)
T ss_pred CCeeEeccccchheehhhccchhhhcccccceEEEEEeecCcc----chhhhhhccceeeceeecCC---cchhhcCCCc
Confidence 3456678999999999995 67899999999999999999876 455553 3344434434443 3588888999
Q ss_pred eEEEEeCCCCceEEEEcCCCCCEEEEEEcCC-----C----CEEEEEeCCC-eEEEEEeeCCeEEEEEec---cCCCcEE
Q 003579 162 SLQLWNISTKKKLYEFKGWGSSISSCVSSPA-----L----DVVAVGCSDG-KIHVHNVRYDEELVTFTH---SMRGAVT 228 (809)
Q Consensus 162 ~i~lwd~~~~~~~~~~~~~~~~I~~l~~sp~-----~----~~la~g~~dg-~i~iwd~~~~~~~~~~~~---~~~~~V~ 228 (809)
.+.+|++..+.-+. .|.-.+.++.|.+. + ..++.-+... .+++-|......+..... ...+.+.
T Consensus 78 ~L~lw~ia~s~~i~---i~Si~~nslgFCrfSl~~~~k~~eqll~yp~rgsde~h~~D~g~~tqv~i~dd~~~~Klgsvm 154 (323)
T KOG0322|consen 78 LLILWTIAYSAFIS---IHSIVVNSLGFCRFSLVKKPKNSEQLLEYPSRGSDETHKQDGGDTTQVQIADDSERSKLGSVM 154 (323)
T ss_pred eEEEEEccCcceEE---EeeeeccccccccceeccCCCcchhheecCCcccchhhhhccCccceeEccCchhccccCcee
Confidence 99999997654332 12233344444332 1 1222211110 122222221112221111 1135677
Q ss_pred EEEEecC--CCCEEEEEcCCCcEEEEECCCcee----------eeeeecccccceEEEEEecCCCEEEEEcCCCcEEEEE
Q 003579 229 ALAFSSD--GQPLLASGASSGVISIWNLEKRRL----------QSVIREAHDNAIISLHFFANEPVLMSASADNSIKMWI 296 (809)
Q Consensus 229 ~l~fs~d--g~~~lasg~~dg~I~iwdl~~~~~----------~~~~~~~h~~~V~~l~~~~~~~~l~s~s~d~~i~vw~ 296 (809)
|..+.-+ ...+|++|..+|.+.+||+.++.. ..... .|..+|.++.|.+.-..=++++.+..+..|+
T Consensus 155 c~~~~~~c~s~~lllaGyEsghvv~wd~S~~~~~~~~~~~~kv~~~~a-sh~qpvlsldyas~~~rGisgga~dkl~~~S 233 (323)
T KOG0322|consen 155 CQDKDHACGSTFLLLAGYESGHVVIWDLSTGDKIIQLPQSSKVESPNA-SHKQPVLSLDYASSCDRGISGGADDKLVMYS 233 (323)
T ss_pred eeeccccccceEEEEEeccCCeEEEEEccCCceeeccccccccccchh-hccCcceeeeechhhcCCcCCCccccceeee
Confidence 7764332 334677888999999999999732 22233 6899999999988766678888899999999
Q ss_pred eeCCCCCceeEEeccCCCCCCeeEEEecCCCEEEEEECCCCEEEEEeeecccceecchhhHHHHHhhccchhhhhccCce
Q 003579 297 FDTTDGDPRLLRFRSGHSAPPLCIRFYANGRHILSAGQDRAFRLFSVIQDQQSRELSQRHVAKRARKLKMKEEELKLKPV 376 (809)
Q Consensus 297 ~~~~~~~~~~~~~~~~h~~~v~~i~~~~~~~~l~s~~~dg~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i 376 (809)
++...+....-..+.-....+..++.-||++.++++|.|+.+|+|+.++......+.
T Consensus 234 l~~s~gslq~~~e~~lknpGv~gvrIRpD~KIlATAGWD~RiRVyswrtl~pLAVLk----------------------- 290 (323)
T KOG0322|consen 234 LNHSTGSLQIRKEITLKNPGVSGVRIRPDGKILATAGWDHRIRVYSWRTLNPLAVLK----------------------- 290 (323)
T ss_pred eccccCcccccceEEecCCCccceEEccCCcEEeecccCCcEEEEEeccCCchhhhh-----------------------
Confidence 987755444433333345568899999999999999999999999988766544432
Q ss_pred eEEeeccccccccceeEEeecCCceEEEEEeeeeeecceeeecCCCCCCCeEEEEEcCCCCEEEEEeCCCcEEEEEC
Q 003579 377 IAFDCAEIRERDWCNVVTCHMDTAQAYVWRLQNFVLGEHILRPCPENPTAVKACTISACGNFAVLGTAGGWIERFNL 453 (809)
Q Consensus 377 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~v~~v~~s~~g~~l~~g~~~g~i~i~~~ 453 (809)
.|...+.+++|+|+.+.++.++.|++|.+|++
T Consensus 291 ---------------------------------------------yHsagvn~vAfspd~~lmAaaskD~rISLWkL 322 (323)
T KOG0322|consen 291 ---------------------------------------------YHSAGVNAVAFSPDCELMAAASKDARISLWKL 322 (323)
T ss_pred ---------------------------------------------hhhcceeEEEeCCCCchhhhccCCceEEeeec
Confidence 35689999999999999999999999999986
No 189
>KOG0649 consensus WD40 repeat protein [General function prediction only]
Probab=99.76 E-value=6e-16 Score=140.13 Aligned_cols=285 Identities=15% Similarity=0.170 Sum_probs=205.4
Q ss_pred ceEEEEEecCCCEEEEEcCCCcEEEEEeeCCC------CCceeEEeccCCCCCCeeEEEecCCCEEEEEECCCCEEEEEe
Q 003579 270 AIISLHFFANEPVLMSASADNSIKMWIFDTTD------GDPRLLRFRSGHSAPPLCIRFYANGRHILSAGQDRAFRLFSV 343 (809)
Q Consensus 270 ~V~~l~~~~~~~~l~s~s~d~~i~vw~~~~~~------~~~~~~~~~~~h~~~v~~i~~~~~~~~l~s~~~dg~i~~wd~ 343 (809)
.|.+-+++|.+++|+.|..+|.|.+..+.... .....+....+|.++++.++|+ ..+|++|+ ||.|+-|.-
T Consensus 12 tvf~qa~sp~~~~l~agn~~G~iav~sl~sl~s~sa~~~gk~~iv~eqahdgpiy~~~f~--d~~Lls~g-dG~V~gw~W 88 (325)
T KOG0649|consen 12 TVFAQAISPSKQYLFAGNLFGDIAVLSLKSLDSGSAEPPGKLKIVPEQAHDGPIYYLAFH--DDFLLSGG-DGLVYGWEW 88 (325)
T ss_pred HHHHHhhCCcceEEEEecCCCeEEEEEehhhhccccCCCCCcceeeccccCCCeeeeeee--hhheeecc-CceEEEeee
Confidence 46667889999999999999999999876431 1123344557999999999998 34677776 599999987
Q ss_pred eecccceecchhhHHHHHhhccchhhhhccCceeEEeeccccccccceeEEeecCCceEEEEEeeeeeecceeeecCCCC
Q 003579 344 IQDQQSRELSQRHVAKRARKLKMKEEELKLKPVIAFDCAEIRERDWCNVVTCHMDTAQAYVWRLQNFVLGEHILRPCPEN 423 (809)
Q Consensus 344 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~ 423 (809)
+....... .-++|......... .-.
T Consensus 89 ~E~~es~~-------------------------------------------------~K~lwe~~~P~~~~------~~e 113 (325)
T KOG0649|consen 89 NEEEESLA-------------------------------------------------TKRLWEVKIPMQVD------AVE 113 (325)
T ss_pred hhhhhhcc-------------------------------------------------chhhhhhcCccccC------ccc
Confidence 54432111 01112221110000 011
Q ss_pred CCCeEEEEEcCCCCEEEEEeCCCcEEEEECCCCceeeeeeCcccccccCccccEEEEEEcCCCCEEEEEeCcCeEEEEEC
Q 003579 424 PTAVKACTISACGNFAVLGTAGGWIERFNLQSGISRGSYLDMSERSNYAHNGEVVGVACDSTNTLMISAGYHGDIKVWDF 503 (809)
Q Consensus 424 ~~~v~~v~~s~~g~~l~~g~~~g~i~i~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~l~s~~~dg~i~iwd~ 503 (809)
-..|.++.+.|..+-++.++.|+.++.||+.+|+....+. +|...|.+++--..+..+++|+.||++|+||.
T Consensus 114 vPeINam~ldP~enSi~~AgGD~~~y~~dlE~G~i~r~~r--------GHtDYvH~vv~R~~~~qilsG~EDGtvRvWd~ 185 (325)
T KOG0649|consen 114 VPEINAMWLDPSENSILFAGGDGVIYQVDLEDGRIQREYR--------GHTDYVHSVVGRNANGQILSGAEDGTVRVWDT 185 (325)
T ss_pred CCccceeEeccCCCcEEEecCCeEEEEEEecCCEEEEEEc--------CCcceeeeeeecccCcceeecCCCccEEEEec
Confidence 2578899999999888888899999999999999999996 99999999998666677999999999999999
Q ss_pred CCCceeeeeecC-----------CCeEEEEEeeCCCEEEEEeCCCeEEEEEcCCCeEEEEEecCCCCeeeEEECCCCCEE
Q 003579 504 KGRDLKSRWEVG-----------CSLVKIVYHRVNGLLATVADDLVIRLFDVVALRMVRKFEGHTDRITDFCFSEDGKWL 572 (809)
Q Consensus 504 ~~~~~~~~~~~~-----------~~i~~~~~s~~~~~la~~~~d~~I~v~d~~~~~~~~~~~~h~~~I~~l~fspdg~~l 572 (809)
++++.+..++.. ..|. +..-+...+++|+ ...+.+|.+++.++...|. -..++..+.|-.| .+
T Consensus 186 kt~k~v~~ie~yk~~~~lRp~~g~wig--ala~~edWlvCGg-Gp~lslwhLrsse~t~vfp-ipa~v~~v~F~~d--~v 259 (325)
T KOG0649|consen 186 KTQKHVSMIEPYKNPNLLRPDWGKWIG--ALAVNEDWLVCGG-GPKLSLWHLRSSESTCVFP-IPARVHLVDFVDD--CV 259 (325)
T ss_pred cccceeEEeccccChhhcCcccCceeE--EEeccCceEEecC-CCceeEEeccCCCceEEEe-cccceeEeeeecc--eE
Confidence 999998887543 2233 3444566776654 5679999999998888776 5567888899765 78
Q ss_pred EEEeCCCeEEEEEcCCccEEEEeeeCcc-eEEEEEcCCCCeEEEEEeCCCeEEEee
Q 003579 573 LSSGMDGSLRIWDVILARQIDAIHVDVS-ITALSLSPNMDVLATAHVDQNGVYLWV 627 (809)
Q Consensus 573 ~s~s~D~~I~vwd~~~~~~i~~~~~~~~-v~~l~~spdg~~lat~~~d~~~i~lW~ 627 (809)
++++..+.|.-|.+. |.+-......++ +++..|+..--.++++....+.+.+..
T Consensus 260 l~~G~g~~v~~~~l~-Gvl~a~ip~~s~~c~s~s~~~~p~k~~s~ag~s~~~~i~~ 314 (325)
T KOG0649|consen 260 LIGGEGNHVQSYTLN-GVLQANIPVESTACYSASWQTSPIKFISIAGFSNKLHILK 314 (325)
T ss_pred EEeccccceeeeeec-cEEEEeccCCccceeeecccCCceEEEEecccceeeeeee
Confidence 888888899999875 555555555444 788887765544444443433466654
No 190
>KOG1007 consensus WD repeat protein TSSC1, WD repeat superfamily [Function unknown]
Probab=99.76 E-value=1.4e-16 Score=147.74 Aligned_cols=275 Identities=16% Similarity=0.261 Sum_probs=199.1
Q ss_pred EEEEEeC----CCeEEEEEeeCCe--EEEEEeccCCCcEEEEEEecCCCCEEEEEcCC-------CcEEEEECCCc----
Q 003579 195 VVAVGCS----DGKIHVHNVRYDE--ELVTFTHSMRGAVTALAFSSDGQPLLASGASS-------GVISIWNLEKR---- 257 (809)
Q Consensus 195 ~la~g~~----dg~i~iwd~~~~~--~~~~~~~~~~~~V~~l~fs~dg~~~lasg~~d-------g~I~iwdl~~~---- 257 (809)
.+++|+. |+.|.+.++..+. .......|+.+.|..++-+|-.+.+|+++..+ -.+.||.+...
T Consensus 28 cFlvgTnslK~dNqVhll~~d~e~s~l~skvf~h~agEvw~las~P~d~~ilaT~yn~~s~s~vl~~aaiw~ipe~~~~S 107 (370)
T KOG1007|consen 28 CFLVGTNSLKEDNQVHLLRLDSEGSELLSKVFFHHAGEVWDLASSPFDQRILATVYNDTSDSGVLTGAAIWQIPEPLGQS 107 (370)
T ss_pred EEEEeccccCCcceeEEEEecCccchhhhhhhhcCCcceehhhcCCCCCceEEEEEeccCCCcceeeEEEEecccccCcc
Confidence 4455543 5777777776443 33333445589999999999888789887642 24789988654
Q ss_pred -----eeeeeeecccccceEEEEEecCCCEEEEEcCCCcEEEEEeeCCCCCceeEE--eccCCCCCCeeEEEec--CCCE
Q 003579 258 -----RLQSVIREAHDNAIISLHFFANEPVLMSASADNSIKMWIFDTTDGDPRLLR--FRSGHSAPPLCIRFYA--NGRH 328 (809)
Q Consensus 258 -----~~~~~~~~~h~~~V~~l~~~~~~~~l~s~s~d~~i~vw~~~~~~~~~~~~~--~~~~h~~~v~~i~~~~--~~~~ 328 (809)
+++..+...+-+.|.|+.|.|++..+++-. |+.|.+|+++........+. ...+|....++-+|+| +|+.
T Consensus 108 ~~~tlE~v~~Ldteavg~i~cvew~Pns~klasm~-dn~i~l~~l~ess~~vaev~ss~s~e~~~~ftsg~WspHHdgnq 186 (370)
T KOG1007|consen 108 NSSTLECVASLDTEAVGKINCVEWEPNSDKLASMD-DNNIVLWSLDESSKIVAEVLSSESAEMRHSFTSGAWSPHHDGNQ 186 (370)
T ss_pred ccchhhHhhcCCHHHhCceeeEEEcCCCCeeEEec-cCceEEEEcccCcchheeecccccccccceecccccCCCCccce
Confidence 334445545667999999999999998876 88999999887654211111 1123556677788888 7777
Q ss_pred EEEEECCCCEEEEEeeecccceecchhhHHHHHhhccchhhhhccCceeEEeeccccccccceeEEeecCCceEEEEEee
Q 003579 329 ILSAGQDRAFRLFSVIQDQQSRELSQRHVAKRARKLKMKEEELKLKPVIAFDCAEIRERDWCNVVTCHMDTAQAYVWRLQ 408 (809)
Q Consensus 329 l~s~~~dg~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~ 408 (809)
+++. .|++++.||+++..+...+.
T Consensus 187 v~tt-~d~tl~~~D~RT~~~~~sI~------------------------------------------------------- 210 (370)
T KOG1007|consen 187 VATT-SDSTLQFWDLRTMKKNNSIE------------------------------------------------------- 210 (370)
T ss_pred EEEe-CCCcEEEEEccchhhhcchh-------------------------------------------------------
Confidence 6665 47788888887654322211
Q ss_pred eeeecceeeecCCCCCCCeEEEEEcCCCCEEEEEeCCCcEEEEECCCCceeeeeeCcccccccCccccEEEEEEcCCCC-
Q 003579 409 NFVLGEHILRPCPENPTAVKACTISACGNFAVLGTAGGWIERFNLQSGISRGSYLDMSERSNYAHNGEVVGVACDSTNT- 487 (809)
Q Consensus 409 ~~~~~~~~~~~~~~~~~~v~~v~~s~~g~~l~~g~~~g~i~i~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~- 487 (809)
.+|...|..+.|+|+.+
T Consensus 211 --------------------------------------------------------------dAHgq~vrdlDfNpnkq~ 228 (370)
T KOG1007|consen 211 --------------------------------------------------------------DAHGQRVRDLDFNPNKQH 228 (370)
T ss_pred --------------------------------------------------------------hhhcceeeeccCCCCceE
Confidence 27888999999999875
Q ss_pred EEEEEeCcCeEEEEECCCC-ceeeeeecC-CCeEEEEEeeC-CCEEEEEeCCCeEEEEEcCCC-----------------
Q 003579 488 LMISAGYHGDIKVWDFKGR-DLKSRWEVG-CSLVKIVYHRV-NGLLATVADDLVIRLFDVVAL----------------- 547 (809)
Q Consensus 488 ~l~s~~~dg~i~iwd~~~~-~~~~~~~~~-~~i~~~~~s~~-~~~la~~~~d~~I~v~d~~~~----------------- 547 (809)
+|++|+.||.|+|||.+.. .++..+..+ ..+.++.|+|. ..++.+++.|..|.+|...+-
T Consensus 229 ~lvt~gDdgyvriWD~R~tk~pv~el~~HsHWvW~VRfn~~hdqLiLs~~SDs~V~Lsca~svSSE~qi~~~~dese~e~ 308 (370)
T KOG1007|consen 229 ILVTCGDDGYVRIWDTRKTKFPVQELPGHSHWVWAVRFNPEHDQLILSGGSDSAVNLSCASSVSSEQQIEFEDDESESED 308 (370)
T ss_pred EEEEcCCCccEEEEeccCCCccccccCCCceEEEEEEecCccceEEEecCCCceeEEEeccccccccccccccccccCcc
Confidence 6789999999999998754 456666555 78999999995 568889999999999865321
Q ss_pred ------------eEEEEEecCCCCeeeEEECCCCCEE-EEEeCCCeEEEEEcCC
Q 003579 548 ------------RMVRKFEGHTDRITDFCFSEDGKWL-LSSGMDGSLRIWDVIL 588 (809)
Q Consensus 548 ------------~~~~~~~~h~~~I~~l~fspdg~~l-~s~s~D~~I~vwd~~~ 588 (809)
..+.++..|.+.|.+++||.-..|+ |+-|.||.+.|=.++.
T Consensus 309 ~dseer~kpL~dg~l~tydehEDSVY~~aWSsadPWiFASLSYDGRviIs~V~r 362 (370)
T KOG1007|consen 309 EDSEERVKPLQDGQLETYDEHEDSVYALAWSSADPWIFASLSYDGRVIISSVPR 362 (370)
T ss_pred hhhHHhcccccccccccccccccceEEEeeccCCCeeEEEeccCceEEeecCCh
Confidence 1244577799999999999977776 5778999998877663
No 191
>KOG1007 consensus WD repeat protein TSSC1, WD repeat superfamily [Function unknown]
Probab=99.76 E-value=8.9e-17 Score=149.12 Aligned_cols=296 Identities=18% Similarity=0.212 Sum_probs=199.7
Q ss_pred CCcEEEEEcCCCccccceeeeEEcCCccccEEEEeCCCCCCEEEEEeCC-------CeEEEEeCCCC---------ceEE
Q 003579 112 DGNMFIWAFKGIEENLAPVGHVKLDDKFTPTCIMHPDTYLNKVIVGSQE-------GSLQLWNISTK---------KKLY 175 (809)
Q Consensus 112 dg~i~vWd~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~l~~~~~d-------g~i~lwd~~~~---------~~~~ 175 (809)
|+.|.+-+++.+.-.. .-+.+..+.+.+...+-+|... ..++++..+ -...||++... +++.
T Consensus 39 dNqVhll~~d~e~s~l-~skvf~h~agEvw~las~P~d~-~ilaT~yn~~s~s~vl~~aaiw~ipe~~~~S~~~tlE~v~ 116 (370)
T KOG1007|consen 39 DNQVHLLRLDSEGSEL-LSKVFFHHAGEVWDLASSPFDQ-RILATVYNDTSDSGVLTGAAIWQIPEPLGQSNSSTLECVA 116 (370)
T ss_pred cceeEEEEecCccchh-hhhhhhcCCcceehhhcCCCCC-ceEEEEEeccCCCcceeeEEEEecccccCccccchhhHhh
Confidence 6667777666543211 1233344555666666677652 334444331 23679988532 2333
Q ss_pred EEc-CCCCCEEEEEEcCCCCEEEEEeCCCeEEEEEeeCCeE-EEEEec----cCCCcEEEEEEec--CCCCEEEEEcCCC
Q 003579 176 EFK-GWGSSISSCVSSPALDVVAVGCSDGKIHVHNVRYDEE-LVTFTH----SMRGAVTALAFSS--DGQPLLASGASSG 247 (809)
Q Consensus 176 ~~~-~~~~~I~~l~~sp~~~~la~g~~dg~i~iwd~~~~~~-~~~~~~----~~~~~V~~l~fs~--dg~~~lasg~~dg 247 (809)
.+. .+-+.|.|+.|.|+++.+|+-. |..|.+|++..+.. +..+.. .+....++-+|+| ||. .+++. .|+
T Consensus 117 ~Ldteavg~i~cvew~Pns~klasm~-dn~i~l~~l~ess~~vaev~ss~s~e~~~~ftsg~WspHHdgn-qv~tt-~d~ 193 (370)
T KOG1007|consen 117 SLDTEAVGKINCVEWEPNSDKLASMD-DNNIVLWSLDESSKIVAEVLSSESAEMRHSFTSGAWSPHHDGN-QVATT-SDS 193 (370)
T ss_pred cCCHHHhCceeeEEEcCCCCeeEEec-cCceEEEEcccCcchheeecccccccccceecccccCCCCccc-eEEEe-CCC
Confidence 443 3456899999999999998876 78999999987765 333332 2345688889998 555 55554 489
Q ss_pred cEEEEECCCceeeeeeecccccceEEEEEecCCC-EEEEEcCCCcEEEEEeeCCCCCceeEEeccCCCCCCeeEEEec-C
Q 003579 248 VISIWNLEKRRLQSVIREAHDNAIISLHFFANEP-VLMSASADNSIKMWIFDTTDGDPRLLRFRSGHSAPPLCIRFYA-N 325 (809)
Q Consensus 248 ~I~iwdl~~~~~~~~~~~~h~~~V~~l~~~~~~~-~l~s~s~d~~i~vw~~~~~~~~~~~~~~~~~h~~~v~~i~~~~-~ 325 (809)
++..||+++.+....+..+|...|..+.|.|+.. +|++++.||.|++||.+... ..+..+.+|...|.+++|+| -
T Consensus 194 tl~~~D~RT~~~~~sI~dAHgq~vrdlDfNpnkq~~lvt~gDdgyvriWD~R~tk---~pv~el~~HsHWvW~VRfn~~h 270 (370)
T KOG1007|consen 194 TLQFWDLRTMKKNNSIEDAHGQRVRDLDFNPNKQHILVTCGDDGYVRIWDTRKTK---FPVQELPGHSHWVWAVRFNPEH 270 (370)
T ss_pred cEEEEEccchhhhcchhhhhcceeeeccCCCCceEEEEEcCCCccEEEEeccCCC---ccccccCCCceEEEEEEecCcc
Confidence 9999999999999999999999999999999865 88999999999999887664 56788899999999999999 5
Q ss_pred CCEEEEEECCCCEEEEEeeecccceecchhhHHHHHhhccchhhhhccCceeEEeeccccccccceeEEeecCCceEEEE
Q 003579 326 GRHILSAGQDRAFRLFSVIQDQQSRELSQRHVAKRARKLKMKEEELKLKPVIAFDCAEIRERDWCNVVTCHMDTAQAYVW 405 (809)
Q Consensus 326 ~~~l~s~~~dg~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~w 405 (809)
.+.++++|.|..+.+|....-.....+....... .......+.+
T Consensus 271 dqLiLs~~SDs~V~Lsca~svSSE~qi~~~~des---e~e~~dseer--------------------------------- 314 (370)
T KOG1007|consen 271 DQLILSGGSDSAVNLSCASSVSSEQQIEFEDDES---ESEDEDSEER--------------------------------- 314 (370)
T ss_pred ceEEEecCCCceeEEEeccccccccccccccccc---cCcchhhHHh---------------------------------
Confidence 6788999999999999765432211111000000 0000000000
Q ss_pred EeeeeeecceeeecCCCCCCCeEEEEEcCCCCEE-EEEeCCCcEEEEECC
Q 003579 406 RLQNFVLGEHILRPCPENPTAVKACTISACGNFA-VLGTAGGWIERFNLQ 454 (809)
Q Consensus 406 ~~~~~~~~~~~~~~~~~~~~~v~~v~~s~~g~~l-~~g~~~g~i~i~~~~ 454 (809)
.+.+....+.....|...|.+++||.-..++ ++-+.||.+.+=++.
T Consensus 315 ---~kpL~dg~l~tydehEDSVY~~aWSsadPWiFASLSYDGRviIs~V~ 361 (370)
T KOG1007|consen 315 ---VKPLQDGQLETYDEHEDSVYALAWSSADPWIFASLSYDGRVIISSVP 361 (370)
T ss_pred ---cccccccccccccccccceEEEeeccCCCeeEEEeccCceEEeecCC
Confidence 0011233455666788999999999866555 556778988876654
No 192
>KOG0642 consensus Cell-cycle nuclear protein, contains WD-40 repeats [Cell cycle control, cell division, chromosome partitioning]
Probab=99.76 E-value=2.2e-17 Score=167.22 Aligned_cols=260 Identities=19% Similarity=0.326 Sum_probs=190.5
Q ss_pred EEEcCCCCCEEEEEEcCCCCEEEEEeCCCeEEEEEeeC--------CeEEEEEeccCCCcEEEEEEecCCCCEEEEEcCC
Q 003579 175 YEFKGWGSSISSCVSSPALDVVAVGCSDGKIHVHNVRY--------DEELVTFTHSMRGAVTALAFSSDGQPLLASGASS 246 (809)
Q Consensus 175 ~~~~~~~~~I~~l~~sp~~~~la~g~~dg~i~iwd~~~--------~~~~~~~~~~~~~~V~~l~fs~dg~~~lasg~~d 246 (809)
.++..|...|+.++|.|....|++++.||.+.+|++.. -+++.+|..| .++|.|++..+++. .+.+|+.|
T Consensus 288 ~tl~s~~d~ir~l~~~~sep~lit~sed~~lk~WnLqk~~~s~~~~~epi~tfraH-~gPVl~v~v~~n~~-~~ysgg~D 365 (577)
T KOG0642|consen 288 FTLRSHDDCIRALAFHPSEPVLITASEDGTLKLWNLQKAKKSAEKDVEPILTFRAH-EGPVLCVVVPSNGE-HCYSGGID 365 (577)
T ss_pred eeeecchhhhhhhhcCCCCCeEEEeccccchhhhhhcccCCccccceeeeEEEecc-cCceEEEEecCCce-EEEeeccC
Confidence 36678899999999999999999999999999999932 2478888886 99999999999999 89999999
Q ss_pred CcEEEEECCCc----------eeeeeeecccccceEEEEEecCCCEEEEEcCCCcEEEEEeeCCCCCceeEEeccCCCCC
Q 003579 247 GVISIWNLEKR----------RLQSVIREAHDNAIISLHFFANEPVLMSASADNSIKMWIFDTTDGDPRLLRFRSGHSAP 316 (809)
Q Consensus 247 g~I~iwdl~~~----------~~~~~~~~~h~~~V~~l~~~~~~~~l~s~s~d~~i~vw~~~~~~~~~~~~~~~~~h~~~ 316 (809)
|+|+.|++... .+...+. ||.+.|+.+++++....|++++.||+++.|+..... +...... ...+-
T Consensus 366 g~I~~w~~p~n~dp~ds~dp~vl~~~l~-Ghtdavw~l~~s~~~~~Llscs~DgTvr~w~~~~~~--~~~f~~~-~e~g~ 441 (577)
T KOG0642|consen 366 GTIRCWNLPPNQDPDDSYDPSVLSGTLL-GHTDAVWLLALSSTKDRLLSCSSDGTVRLWEPTEES--PCTFGEP-KEHGY 441 (577)
T ss_pred ceeeeeccCCCCCcccccCcchhcccee-ccccceeeeeecccccceeeecCCceEEeeccCCcC--ccccCCc-cccCC
Confidence 99999965421 2344455 999999999999999999999999999999654432 2112222 22233
Q ss_pred CeeEEEecCC-CEEEEEECCCCEEEEEeeecc---cceecchhhHHHHHhhccchhhhhccCceeEEeecccccccccee
Q 003579 317 PLCIRFYANG-RHILSAGQDRAFRLFSVIQDQ---QSRELSQRHVAKRARKLKMKEEELKLKPVIAFDCAEIRERDWCNV 392 (809)
Q Consensus 317 v~~i~~~~~~-~~l~s~~~dg~i~~wd~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~ 392 (809)
+.++.+-... ...++ +...+.+++.... ....+...
T Consensus 442 Plsvd~~ss~~a~~~~---s~~~~~~~~~~~ev~s~~~~~~s~------------------------------------- 481 (577)
T KOG0642|consen 442 PLSVDRTSSRPAHSLA---SFRFGYTSIDDMEVVSDLLIFESS------------------------------------- 481 (577)
T ss_pred cceEeeccchhHhhhh---hcccccccchhhhhhhheeecccc-------------------------------------
Confidence 4555554322 12222 2223333322211 11111000
Q ss_pred EEeecCCceEEEEEeeeeeecceeeecCCCCCCCeEEEEEcCCCCEEEEEeCCCcEEEEECCCCceeeeeeCcccccccC
Q 003579 393 VTCHMDTAQAYVWRLQNFVLGEHILRPCPENPTAVKACTISACGNFAVLGTAGGWIERFNLQSGISRGSYLDMSERSNYA 472 (809)
Q Consensus 393 ~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~v~~v~~s~~g~~l~~g~~~g~i~i~~~~~~~~~~~~~~~~~~~~~~ 472 (809)
..+.......+.-+...|.+.+.+.+..++.|+++|..++....... +
T Consensus 482 ------------------------~~~~~~~~~~in~vVs~~~~~~~~~~hed~~Ir~~dn~~~~~l~s~~--------a 529 (577)
T KOG0642|consen 482 ------------------------ASPGPRRYPQINKVVSHPTADITFTAHEDRSIRFFDNKTGKILHSMV--------A 529 (577)
T ss_pred ------------------------CCCcccccCccceEEecCCCCeeEecccCCceecccccccccchhee--------e
Confidence 00000112456677788889999999999999999999999988876 8
Q ss_pred ccccEEEEEEcCCCCEEEEEeCcCeEEEEECCCCceeeee
Q 003579 473 HNGEVVGVACDSTNTLMISAGYHGDIKVWDFKGRDLKSRW 512 (809)
Q Consensus 473 h~~~v~~l~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~ 512 (809)
|...++++++.|+|.+|++++.|+.+++|.+....++...
T Consensus 530 ~~~svtslai~~ng~~l~s~s~d~sv~l~kld~k~~~~es 569 (577)
T KOG0642|consen 530 HKDSVTSLAIDPNGPYLMSGSHDGSVRLWKLDVKTCVLES 569 (577)
T ss_pred ccceecceeecCCCceEEeecCCceeehhhccchheeecc
Confidence 9999999999999999999999999999998776655443
No 193
>KOG1912 consensus WD40 repeat protein [General function prediction only]
Probab=99.75 E-value=1.8e-15 Score=158.24 Aligned_cols=433 Identities=14% Similarity=0.144 Sum_probs=272.6
Q ss_pred cCCeEEEEEEcCCeEEEEEcCccEEEEecCCCCCCcEEEEEeCC------------eEEEEECCe---EEEEECCe--eE
Q 003579 24 LGTENFVTVSVGKAFHIYNCAKLNLVLVGPQLPKKIRALASYRD------------YTFAAYGNH---IAVVKRAH--QV 86 (809)
Q Consensus 24 ~~~~~~i~~~~~~~i~iwd~~~~~~~~~~~~~~~~I~~la~~~~------------~~~~a~g~~---i~vw~~~~--~~ 86 (809)
.+...+++++.+..|.+-|..+.+++.....|+..|+.+.+.|. ...+|+++. |.+||... .+
T Consensus 23 w~~~GLiAygshslV~VVDs~s~q~iqsie~h~s~V~~VrWap~~~p~~llS~~~~~lliAsaD~~GrIil~d~~~~s~~ 102 (1062)
T KOG1912|consen 23 WSPSGLIAYGSHSLVSVVDSRSLQLIQSIELHQSAVTSVRWAPAPSPRDLLSPSSSQLLIASADISGRIILVDFVLASVI 102 (1062)
T ss_pred cCccceEEEecCceEEEEehhhhhhhhccccCccceeEEEeccCCCchhccCccccceeEEeccccCcEEEEEehhhhhh
Confidence 45677899999999999999999999999899999999998753 345677654 99999643 34
Q ss_pred EEEccccccEEEEEE-----eC-CEEEEEeCCCcEEEEEcCCCccccceeeeEEcCCccccEEEEeCCCCCCEEEEEeCC
Q 003579 87 ATWSRHSAKVNLLLL-----FG-EHILSIDIDGNMFIWAFKGIEENLAPVGHVKLDDKFTPTCIMHPDTYLNKVIVGSQE 160 (809)
Q Consensus 87 ~~~~~h~~~V~~l~~-----~g-~~l~s~~~dg~i~vWd~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~l~~~~~d 160 (809)
..+..|..+|..+.| +. +.|+.......|.+|+..+|+. +-............-+.|-.. ..+.+-+..
T Consensus 103 ~~l~~~~~~~qdl~W~~~rd~Srd~LlaIh~ss~lvLwntdtG~k----~Wk~~ys~~iLs~f~~DPfd~-rh~~~l~s~ 177 (1062)
T KOG1912|consen 103 NWLSHSNDSVQDLCWVPARDDSRDVLLAIHGSSTLVLWNTDTGEK----FWKYDYSHEILSCFRVDPFDS-RHFCVLGSK 177 (1062)
T ss_pred hhhcCCCcchhheeeeeccCcchheeEEecCCcEEEEEEccCCce----eeccccCCcceeeeeeCCCCc-ceEEEEccC
Confidence 448899999999997 23 6788888899999999999987 444333333333333555443 445555566
Q ss_pred CeEEEEeCC-------CCceEEEEcCCCC------------CE-------------EEEEEcCCCCEEEEEeCCCeEEEE
Q 003579 161 GSLQLWNIS-------TKKKLYEFKGWGS------------SI-------------SSCVSSPALDVVAVGCSDGKIHVH 208 (809)
Q Consensus 161 g~i~lwd~~-------~~~~~~~~~~~~~------------~I-------------~~l~~sp~~~~la~g~~dg~i~iw 208 (809)
|.+.+-+.- .|+..+.-..|.. .+ ..++|+|.-+-+....-...+.++
T Consensus 178 g~vl~~~~l~~sep~~pgk~~qI~sd~Sdl~~lere~at~ns~ts~~~sa~fity~a~faf~p~~rn~lfi~~prellv~ 257 (1062)
T KOG1912|consen 178 GFVLSCKDLGLSEPDVPGKEFQITSDHSDLAHLERETATGNSTTSTPASAYFITYCAQFAFSPHWRNILFITFPRELLVF 257 (1062)
T ss_pred ceEEEEeccCCCCCCCCceeEEEecCccchhhhhhhhhccccccCCCcchhHHHHHHhhhcChhhhceEEEEeccceEEE
Confidence 767666542 2344444333322 11 124678876655555667889999
Q ss_pred EeeCCeEEEEEeccCCCcEEEEEEecCCC-CEEEEEcCCCcEEEEECCCc----------------eeeeeeecccccce
Q 003579 209 NVRYDEELVTFTHSMRGAVTALAFSSDGQ-PLLASGASSGVISIWNLEKR----------------RLQSVIREAHDNAI 271 (809)
Q Consensus 209 d~~~~~~~~~~~~~~~~~V~~l~fs~dg~-~~lasg~~dg~I~iwdl~~~----------------~~~~~~~~~h~~~V 271 (809)
|++-..++...... .+.+.-+.+.|+++ ..|.+.-.||.+.+|--+.. .....+..-.+-.+
T Consensus 258 dle~~~~l~vvpie-r~~akfv~vlP~~~rd~LfclH~nG~ltirvrk~~~~~f~~~~~~l~~dl~~Q~~~vr~m~~~rp 336 (1062)
T KOG1912|consen 258 DLEYECCLAVVPIE-RGGAKFVDVLPDPRRDALFCLHSNGRLTIRVRKEEPTEFKKPNASLSMDLGEQVHVVRPMEEFRP 336 (1062)
T ss_pred cchhhceeEEEEec-cCCcceeEeccCCCcceEEEEecCCeEEEEEeeccCccccccchhhccccccceEEEeechhccc
Confidence 99999988888776 66777888888764 36778889999999975542 11222221112222
Q ss_pred EEEEEecC-CCEEEEEcCCCcEEEEEeeCCCCCceeEEeccCCCCCCeeEEEecC-----CCEEEEEECCCCEEEEEeee
Q 003579 272 ISLHFFAN-EPVLMSASADNSIKMWIFDTTDGDPRLLRFRSGHSAPPLCIRFYAN-----GRHILSAGQDRAFRLFSVIQ 345 (809)
Q Consensus 272 ~~l~~~~~-~~~l~s~s~d~~i~vw~~~~~~~~~~~~~~~~~h~~~v~~i~~~~~-----~~~l~s~~~dg~i~~wd~~~ 345 (809)
......|. ...++.--.+|.+.+|.+..+.- ......+...-+..+.|+.+ ...+.+-+.||.. ..
T Consensus 337 ~~~~~cPs~~sa~avl~s~g~~~~w~l~~~ri---~~~~~s~~iel~~pf~f~~~~~~v~k~~l~~LS~dg~h-----~s 408 (1062)
T KOG1912|consen 337 VIGASCPSTPSALAVLYSSGDSTFWQLSNGRI---HLDYRSSSIELVLPFDFNLSTKLVGKTSLISLSDDGSH-----SS 408 (1062)
T ss_pred ceeecCCCChhhhhhhhhcchhHHHhhhcCCc---CcccccccccccccccccCceeehhhccccchhhcCCC-----CC
Confidence 23333343 23333334567788887764311 11111112222222333221 1123333444410 00
Q ss_pred cccceecchhhHHHHHhhccchhhhhccCceeEEeeccccccccceeEEeecCCceEEEEEeeeeeecceeeecCCCCCC
Q 003579 346 DQQSRELSQRHVAKRARKLKMKEEELKLKPVIAFDCAEIRERDWCNVVTCHMDTAQAYVWRLQNFVLGEHILRPCPENPT 425 (809)
Q Consensus 346 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~ 425 (809)
+....+. .|. .
T Consensus 409 Gs~~~~~---------------------~p~------------------------------------------------p 419 (1062)
T KOG1912|consen 409 GSTCVRM---------------------RPM------------------------------------------------P 419 (1062)
T ss_pred Cceeeec---------------------ccC------------------------------------------------c
Confidence 0000000 000 0
Q ss_pred CeEEEEEcCCC-------CEEEEEeCCCcEEEEECCCCceeeeeeCcccccccCccccEEEEEEcCCCCEEEEE------
Q 003579 426 AVKACTISACG-------NFAVLGTAGGWIERFNLQSGISRGSYLDMSERSNYAHNGEVVGVACDSTNTLMISA------ 492 (809)
Q Consensus 426 ~v~~v~~s~~g-------~~l~~g~~~g~i~i~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~l~s~------ 492 (809)
..+-+.-.|-| ..+++|++.|+|.++|+.++.....+. .|...|.++.|-...+++-.+
T Consensus 420 ~~t~~~~~p~~n~~~~~~pLvAvGT~sGTV~vvdvst~~v~~~fs--------vht~~VkgleW~g~sslvSfsys~~n~ 491 (1062)
T KOG1912|consen 420 ELTKVENDPGGNTPAGTVPLVAVGTNSGTVDVVDVSTNAVAASFS--------VHTSLVKGLEWLGNSSLVSFSYSHVNS 491 (1062)
T ss_pred ccceeecCCCCCccceeeeeEEeecCCceEEEEEecchhhhhhhc--------ccccceeeeeeccceeEEEeeeccccc
Confidence 00011111111 368999999999999999999888876 899999999998766544322
Q ss_pred ---eCcCeEEEEECCCCceeeee--e--cCCCeEEEEEeeCCCEEEEEeCCCeEEEEEcCCC
Q 003579 493 ---GYHGDIKVWDFKGRDLKSRW--E--VGCSLVKIVYHRVNGLLATVADDLVIRLFDVVAL 547 (809)
Q Consensus 493 ---~~dg~i~iwd~~~~~~~~~~--~--~~~~i~~~~~s~~~~~la~~~~d~~I~v~d~~~~ 547 (809)
+.-+.+.+-|+.+|....-- + ...+|..+..+..++|++....+.-+.+||+++.
T Consensus 492 ~sg~vrN~l~vtdLrtGlsk~fR~l~~~despI~~irvS~~~~yLai~Fr~~plEiwd~kt~ 553 (1062)
T KOG1912|consen 492 ASGGVRNDLVVTDLRTGLSKRFRGLQKPDESPIRAIRVSSSGRYLAILFRREPLEIWDLKTL 553 (1062)
T ss_pred cccceeeeEEEEEcccccccccccCCCCCcCcceeeeecccCceEEEEecccchHHHhhccc
Confidence 22245778888888554332 2 2389999999999999999999999999999764
No 194
>KOG0644 consensus Uncharacterized conserved protein, contains WD40 repeat and BROMO domains [General function prediction only]
Probab=99.75 E-value=3.4e-18 Score=179.65 Aligned_cols=286 Identities=20% Similarity=0.273 Sum_probs=224.2
Q ss_pred eEEEEcCCCCCEEEEEEcCCCCEEEEEeCCCeEEEEEeeCCeEEEEEeccCCCcEEEEEEecCCCCEEEEEcCCCcEEEE
Q 003579 173 KLYEFKGWGSSISSCVSSPALDVVAVGCSDGKIHVHNVRYDEELVTFTHSMRGAVTALAFSSDGQPLLASGASSGVISIW 252 (809)
Q Consensus 173 ~~~~~~~~~~~I~~l~~sp~~~~la~g~~dg~i~iwd~~~~~~~~~~~~~~~~~V~~l~fs~dg~~~lasg~~dg~I~iw 252 (809)
.+..+.+|..+|.|..|...|.++++|+.|..++||..+++.++....+| .+.|+.++.+.+.. ++|+++.|..|++|
T Consensus 182 ~ikrLlgH~naVyca~fDrtg~~Iitgsdd~lvKiwS~et~~~lAs~rGh-s~ditdlavs~~n~-~iaaaS~D~vIrvW 259 (1113)
T KOG0644|consen 182 NIKRLLGHRNAVYCAIFDRTGRYIITGSDDRLVKIWSMETARCLASCRGH-SGDITDLAVSSNNT-MIAAASNDKVIRVW 259 (1113)
T ss_pred HHHHHHhhhhheeeeeeccccceEeecCccceeeeeeccchhhhccCCCC-ccccchhccchhhh-hhhhcccCceEEEE
Confidence 34456799999999999999999999999999999999999999999886 89999999998877 89999999999999
Q ss_pred ECCCceeeeeeecccccceEEEEEecCCCEEEEEcCCCcEEEEEeeCC--CCCceeEEeccCCCCCCeeEEEecCCCEEE
Q 003579 253 NLEKRRLQSVIREAHDNAIISLHFFANEPVLMSASADNSIKMWIFDTT--DGDPRLLRFRSGHSAPPLCIRFYANGRHIL 330 (809)
Q Consensus 253 dl~~~~~~~~~~~~h~~~V~~l~~~~~~~~l~s~s~d~~i~vw~~~~~--~~~~~~~~~~~~h~~~v~~i~~~~~~~~l~ 330 (809)
-+..+.++..+. +|++.|++++|+|-. +.+.||++++||.+.. .-.++.+..- ...-+.++.|...+..++
T Consensus 260 rl~~~~pvsvLr-ghtgavtaiafsP~~----sss~dgt~~~wd~r~~~~~y~prp~~~~--~~~~~~s~~~~~~~~~f~ 332 (1113)
T KOG0644|consen 260 RLPDGAPVSVLR-GHTGAVTAIAFSPRA----SSSDDGTCRIWDARLEPRIYVPRPLKFT--EKDLVDSILFENNGDRFL 332 (1113)
T ss_pred ecCCCchHHHHh-ccccceeeeccCccc----cCCCCCceEeccccccccccCCCCCCcc--cccceeeeeccccccccc
Confidence 999999999999 999999999999965 7788999999988722 1112222211 224566777777888899
Q ss_pred EEECCCCEEEEEeeecccceecchhhHHHHHhhccchhhhhccCceeEEeeccccccccceeEEeecCCceEEEEEeeee
Q 003579 331 SAGQDRAFRLFSVIQDQQSRELSQRHVAKRARKLKMKEEELKLKPVIAFDCAEIRERDWCNVVTCHMDTAQAYVWRLQNF 410 (809)
Q Consensus 331 s~~~dg~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~ 410 (809)
+++.|+.-..|.........
T Consensus 333 Tgs~d~ea~n~e~~~l~~~~------------------------------------------------------------ 352 (1113)
T KOG0644|consen 333 TGSRDGEARNHEFEQLAWRS------------------------------------------------------------ 352 (1113)
T ss_pred cccCCcccccchhhHhhhhc------------------------------------------------------------
Confidence 99999988777643211000
Q ss_pred eecceeeecCCCCCCCeEEEEEcCC-CCEEEEEeCCCcEEEEECCCCceeeeeeCcccccccCccccEEEEEEcCCC-CE
Q 003579 411 VLGEHILRPCPENPTAVKACTISAC-GNFAVLGTAGGWIERFNLQSGISRGSYLDMSERSNYAHNGEVVGVACDSTN-TL 488 (809)
Q Consensus 411 ~~~~~~~~~~~~~~~~v~~v~~s~~-g~~l~~g~~~g~i~i~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~-~~ 488 (809)
..+.-+..+.+ ..+.+++-.+-.+.+||+.+|....... +|...+..+.++|-+ +.
T Consensus 353 --------------~~lif~t~ssd~~~~~~~ar~~~~~~vwnl~~g~l~H~l~--------ghsd~~yvLd~Hpfn~ri 410 (1113)
T KOG0644|consen 353 --------------NLLIFVTRSSDLSSIVVTARNDHRLCVWNLYTGQLLHNLM--------GHSDEVYVLDVHPFNPRI 410 (1113)
T ss_pred --------------cceEEEeccccccccceeeeeeeEeeeeecccchhhhhhc--------ccccceeeeeecCCCcHh
Confidence 00000001111 1344555566778899999998777665 899999999999976 45
Q ss_pred EEEEeCcCeEEEEECCCCceeeeeec-CCCeEEEEEeeCCCEEEEEeCCCeEEEEEcCCCeE
Q 003579 489 MISAGYHGDIKVWDFKGRDLKSRWEV-GCSLVKIVYHRVNGLLATVADDLVIRLFDVVALRM 549 (809)
Q Consensus 489 l~s~~~dg~i~iwd~~~~~~~~~~~~-~~~i~~~~~s~~~~~la~~~~d~~I~v~d~~~~~~ 549 (809)
..+++.||...|||+-.|.+++.+.. +..+....||+||..++...+-|.++|.....++.
T Consensus 411 ~msag~dgst~iwdi~eg~pik~y~~gh~kl~d~kFSqdgts~~lsd~hgql~i~g~gqs~s 472 (1113)
T KOG0644|consen 411 AMSAGYDGSTIIWDIWEGIPIKHYFIGHGKLVDGKFSQDGTSIALSDDHGQLYILGTGQSKS 472 (1113)
T ss_pred hhhccCCCceEeeecccCCcceeeecccceeeccccCCCCceEecCCCCCceEEeccCCCcc
Confidence 56899999999999999888776653 47788889999999999998899999987655443
No 195
>KOG2110 consensus Uncharacterized conserved protein, contains WD40 repeats [Function unknown]
Probab=99.75 E-value=1.4e-15 Score=146.44 Aligned_cols=174 Identities=19% Similarity=0.261 Sum_probs=143.3
Q ss_pred CcEEEEECCCCceeeeeeCcccccccCccccEEEEEEcCCCCEEEEEeCcCeEEEEECCCCceeeeeecC----CCeEEE
Q 003579 446 GWIERFNLQSGISRGSYLDMSERSNYAHNGEVVGVACDSTNTLMISAGYHGDIKVWDFKGRDLKSRWEVG----CSLVKI 521 (809)
Q Consensus 446 g~i~i~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~----~~i~~~ 521 (809)
..+++++...+..+..+ ....+|.++.++. +.|+++-. ..|+|||+++.++++++... ..+..+
T Consensus 68 r~Lkv~~~Kk~~~ICe~---------~fpt~IL~VrmNr--~RLvV~Le-e~IyIydI~~MklLhTI~t~~~n~~gl~Al 135 (391)
T KOG2110|consen 68 RKLKVVHFKKKTTICEI---------FFPTSILAVRMNR--KRLVVCLE-ESIYIYDIKDMKLLHTIETTPPNPKGLCAL 135 (391)
T ss_pred ceEEEEEcccCceEEEE---------ecCCceEEEEEcc--ceEEEEEc-ccEEEEecccceeehhhhccCCCccceEee
Confidence 35788888877776665 3456788888764 45665555 44999999999999988654 345556
Q ss_pred EEeeCCCEEEEEe--CCCeEEEEEcCCCeEEEEEecCCCCeeeEEECCCCCEEEEEeCCCe-EEEEEcCCccEEEEeeeC
Q 003579 522 VYHRVNGLLATVA--DDLVIRLFDVVALRMVRKFEGHTDRITDFCFSEDGKWLLSSGMDGS-LRIWDVILARQIDAIHVD 598 (809)
Q Consensus 522 ~~s~~~~~la~~~--~d~~I~v~d~~~~~~~~~~~~h~~~I~~l~fspdg~~l~s~s~D~~-I~vwd~~~~~~i~~~~~~ 598 (809)
.+++.+.++|.-+ ..|.|++||..+.+.+..+..|.+++.+++|+++|.+|||||..|+ |||+.+++|+.+..|+-.
T Consensus 136 S~n~~n~ylAyp~s~t~GdV~l~d~~nl~~v~~I~aH~~~lAalafs~~G~llATASeKGTVIRVf~v~~G~kl~eFRRG 215 (391)
T KOG2110|consen 136 SPNNANCYLAYPGSTTSGDVVLFDTINLQPVNTINAHKGPLAALAFSPDGTLLATASEKGTVIRVFSVPEGQKLYEFRRG 215 (391)
T ss_pred ccCCCCceEEecCCCCCceEEEEEcccceeeeEEEecCCceeEEEECCCCCEEEEeccCceEEEEEEcCCccEeeeeeCC
Confidence 6666667998754 3699999999999999999999999999999999999999999886 799999999999999743
Q ss_pred c---ceEEEEEcCCCCeEEEEEeCCCeEEEeecCccc
Q 003579 599 V---SITALSLSPNMDVLATAHVDQNGVYLWVNRCMF 632 (809)
Q Consensus 599 ~---~v~~l~~spdg~~lat~~~d~~~i~lW~~~~~~ 632 (809)
. .|.+++|+||+++|++++..+ +|+++.+....
T Consensus 216 ~~~~~IySL~Fs~ds~~L~~sS~Te-TVHiFKL~~~~ 251 (391)
T KOG2110|consen 216 TYPVSIYSLSFSPDSQFLAASSNTE-TVHIFKLEKVS 251 (391)
T ss_pred ceeeEEEEEEECCCCCeEEEecCCC-eEEEEEecccc
Confidence 3 399999999999999999888 89999987555
No 196
>KOG1517 consensus Guanine nucleotide binding protein MIP1 [Cell cycle control, cell division, chromosome partitioning]
Probab=99.75 E-value=2.7e-16 Score=169.74 Aligned_cols=290 Identities=19% Similarity=0.321 Sum_probs=208.4
Q ss_pred cEEEEEEecCCCCEEEEEcCCCcEEEEECCCceeeeeeecc--cccceEEEEEecCC--CEEEEEcCCCcEEEEEeeCCC
Q 003579 226 AVTALAFSSDGQPLLASGASSGVISIWNLEKRRLQSVIREA--HDNAIISLHFFANE--PVLMSASADNSIKMWIFDTTD 301 (809)
Q Consensus 226 ~V~~l~fs~dg~~~lasg~~dg~I~iwdl~~~~~~~~~~~~--h~~~V~~l~~~~~~--~~l~s~s~d~~i~vw~~~~~~ 301 (809)
+...+.|+|-.. .++++...-.|++||.+.++.+..+..+ ....|+.+.+..+. .++++++.||.||||+--...
T Consensus 1066 ~pk~~~~hpf~p-~i~~ad~r~~i~vwd~e~~~~l~~F~n~~~~~t~Vs~l~liNe~D~aLlLtas~dGvIRIwk~y~~~ 1144 (1387)
T KOG1517|consen 1066 PPKTLKFHPFEP-QIAAADDRERIRVWDWEKGRLLNGFDNGAFPDTRVSDLELINEQDDALLLTASSDGVIRIWKDYADK 1144 (1387)
T ss_pred CCceeeecCCCc-eeEEcCCcceEEEEecccCceeccccCCCCCCCccceeeeecccchhheeeeccCceEEEecccccc
Confidence 456677888766 7888887789999999999998877632 24579999998744 489999999999999633222
Q ss_pred -CCceeEEeccCCC-------CCCeeEEEecCCCEEEEEECCCCEEEEEeeecccceecchhhHHHHHhhccchhhhhcc
Q 003579 302 -GDPRLLRFRSGHS-------APPLCIRFYANGRHILSAGQDRAFRLFSVIQDQQSRELSQRHVAKRARKLKMKEEELKL 373 (809)
Q Consensus 302 -~~~~~~~~~~~h~-------~~v~~i~~~~~~~~l~s~~~dg~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 373 (809)
..++++....+-+ +.=.-+.|.....+|+++|.-+.|++||.........+..
T Consensus 1145 ~~~~eLVTaw~~Ls~~~~~~r~~~~v~dWqQ~~G~Ll~tGd~r~IRIWDa~~E~~~~diP~------------------- 1205 (1387)
T KOG1517|consen 1145 WKKPELVTAWSSLSDQLPGARGTGLVVDWQQQSGHLLVTGDVRSIRIWDAHKEQVVADIPY------------------- 1205 (1387)
T ss_pred cCCceeEEeeccccccCccCCCCCeeeehhhhCCeEEecCCeeEEEEEecccceeEeeccc-------------------
Confidence 4445554333221 1113455666556777777788899999876655444322
Q ss_pred CceeEEeeccccccccceeEEeecCCceEEEEEeeeeeecceeeecCCCCCCCeEEEEEcC-CCCEEEEEeCCCcEEEEE
Q 003579 374 KPVIAFDCAEIRERDWCNVVTCHMDTAQAYVWRLQNFVLGEHILRPCPENPTAVKACTISA-CGNFAVLGTAGGWIERFN 452 (809)
Q Consensus 374 ~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~v~~v~~s~-~g~~l~~g~~~g~i~i~~ 452 (809)
+....++++.-+. .|+.+++|..||.|++||
T Consensus 1206 ------------------------------------------------~s~t~vTaLS~~~~~gn~i~AGfaDGsvRvyD 1237 (1387)
T KOG1517|consen 1206 ------------------------------------------------GSSTLVTALSADLVHGNIIAAGFADGSVRVYD 1237 (1387)
T ss_pred ------------------------------------------------CCCccceeecccccCCceEEEeecCCceEEee
Confidence 1224555554433 479999999999999999
Q ss_pred CCCCceeeeeeCcccccccCcccc--EEEEEEcCCCC-EEEEEeCcCeEEEEECCCCceeeee------ecCCCeEEEEE
Q 003579 453 LQSGISRGSYLDMSERSNYAHNGE--VVGVACDSTNT-LMISAGYHGDIKVWDFKGRDLKSRW------EVGCSLVKIVY 523 (809)
Q Consensus 453 ~~~~~~~~~~~~~~~~~~~~h~~~--v~~l~~~~~~~-~l~s~~~dg~i~iwd~~~~~~~~~~------~~~~~i~~~~~ 523 (809)
.+......... ....|+.. |..+.+.+.|- .|++|+.||.|++||++.......+ +.++..+++..
T Consensus 1238 ~R~a~~ds~v~-----~~R~h~~~~~Iv~~slq~~G~~elvSgs~~G~I~~~DlR~~~~e~~~~iv~~~~yGs~lTal~V 1312 (1387)
T KOG1517|consen 1238 RRMAPPDSLVC-----VYREHNDVEPIVHLSLQRQGLGELVSGSQDGDIQLLDLRMSSKETFLTIVAHWEYGSALTALTV 1312 (1387)
T ss_pred cccCCccccce-----eecccCCcccceeEEeecCCCcceeeeccCCeEEEEecccCcccccceeeeccccCccceeeee
Confidence 87654421111 12377776 99999988764 5999999999999999874222221 22346999999
Q ss_pred eeCCCEEEEEeCCCeEEEEEcCCCeEEEEEec-------CCCCeeeEEECCCCCEEEEEeCCCeEEEEEcCCcc
Q 003579 524 HRVNGLLATVADDLVIRLFDVVALRMVRKFEG-------HTDRITDFCFSEDGKWLLSSGMDGSLRIWDVILAR 590 (809)
Q Consensus 524 s~~~~~la~~~~d~~I~v~d~~~~~~~~~~~~-------h~~~I~~l~fspdg~~l~s~s~D~~I~vwd~~~~~ 590 (809)
|++...+|+|+. +.|.||++... .+..++. ..+.+.+++|+|.--.||.|+.|.+|.||..+.++
T Consensus 1313 H~hapiiAsGs~-q~ikIy~~~G~-~l~~~k~n~~F~~q~~gs~scL~FHP~~~llAaG~~Ds~V~iYs~~k~~ 1384 (1387)
T KOG1517|consen 1313 HEHAPIIASGSA-QLIKIYSLSGE-QLNIIKYNPGFMGQRIGSVSCLAFHPHRLLLAAGSADSTVSIYSCEKPR 1384 (1387)
T ss_pred ccCCCeeeecCc-ceEEEEecChh-hhcccccCcccccCcCCCcceeeecchhHhhhhccCCceEEEeecCCcC
Confidence 999999999998 99999998743 3333222 23568999999998899999999999999877553
No 197
>KOG1587 consensus Cytoplasmic dynein intermediate chain [Cytoskeleton]
Probab=99.75 E-value=4.4e-16 Score=166.71 Aligned_cols=285 Identities=14% Similarity=0.177 Sum_probs=202.8
Q ss_pred CcEEEEECCCceeeeeeecccccceEEEEEecCCC-EEEEEcCCCcEEEEEeeCCCCC--ceeEEeccCCCCCCeeEEEe
Q 003579 247 GVISIWNLEKRRLQSVIREAHDNAIISLHFFANEP-VLMSASADNSIKMWIFDTTDGD--PRLLRFRSGHSAPPLCIRFY 323 (809)
Q Consensus 247 g~I~iwdl~~~~~~~~~~~~h~~~V~~l~~~~~~~-~l~s~s~d~~i~vw~~~~~~~~--~~~~~~~~~h~~~v~~i~~~ 323 (809)
+.+.+|+++......... .-...|.++.|+|..+ +++.|..+|+|.+||+...... ..+-.....|..+++.+.|.
T Consensus 222 ~~~~vW~~~~p~~Pe~~~-~~~s~v~~~~f~p~~p~ll~gG~y~GqV~lWD~~~~~~~~~s~ls~~~~sh~~~v~~vvW~ 300 (555)
T KOG1587|consen 222 GVLLVWSLKNPNTPELVL-ESPSEVTCLKFCPFDPNLLAGGCYNGQVVLWDLRKGSDTPPSGLSALEVSHSEPVTAVVWL 300 (555)
T ss_pred ceEEEEecCCCCCceEEE-ecCCceeEEEeccCCcceEEeeccCceEEEEEccCCCCCCCcccccccccCCcCeEEEEEe
Confidence 479999998873222222 4678899999999654 7777888999999998877552 23334456789999999998
Q ss_pred cCC--CEEEEEECCCCEEEEEeeecccceecchhhHHHHHhhccchhhhhccCceeEEeeccccccccceeEEeecCCce
Q 003579 324 ANG--RHILSAGQDRAFRLFSVIQDQQSRELSQRHVAKRARKLKMKEEELKLKPVIAFDCAEIRERDWCNVVTCHMDTAQ 401 (809)
Q Consensus 324 ~~~--~~l~s~~~dg~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~ 401 (809)
.+. .-+++++.||.|..|+++.-....+........+
T Consensus 301 ~~~~~~~f~s~ssDG~i~~W~~~~l~~P~e~~~~~~~~~----------------------------------------- 339 (555)
T KOG1587|consen 301 QNEHNTEFFSLSSDGSICSWDTDMLSLPVEGLLLESKKH----------------------------------------- 339 (555)
T ss_pred ccCCCCceEEEecCCcEeeeeccccccchhhcccccccc-----------------------------------------
Confidence 744 4599999999999998765444322211100000
Q ss_pred EEEEEeeeeeecceeeecCCCCCCCeEEEEEcC-CCCEEEEEeCCCcEEEEECCCCceeeeeeCcccccccCccccEEEE
Q 003579 402 AYVWRLQNFVLGEHILRPCPENPTAVKACTISA-CGNFAVLGTAGGWIERFNLQSGISRGSYLDMSERSNYAHNGEVVGV 480 (809)
Q Consensus 402 ~~~w~~~~~~~~~~~~~~~~~~~~~v~~v~~s~-~g~~l~~g~~~g~i~i~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l 480 (809)
..........++++.|.+ +-+.+++|+..|.|..-+-+..................|.+.|..+
T Consensus 340 ---------------~~~~~~~~~~~t~~~F~~~~p~~FiVGTe~G~v~~~~r~g~~~~~~~~~~~~~~~~~h~g~v~~v 404 (555)
T KOG1587|consen 340 ---------------KGQQSSKAVGATSLKFEPTDPNHFIVGTEEGKVYKGCRKGYTPAPEVSYKGHSTFITHIGPVYAV 404 (555)
T ss_pred ---------------cccccccccceeeEeeccCCCceEEEEcCCcEEEEEeccCCcccccccccccccccccCcceEee
Confidence 000011225778888887 5578999999999988555444333311111111234789999999
Q ss_pred EEcCCCCEEEEEeCcCeEEEEECC-CCceeeeeecC-CCeEEEEEeeCC-CEEEEEeCCCeEEEEEcCCC--eEEEEEec
Q 003579 481 ACDSTNTLMISAGYHGDIKVWDFK-GRDLKSRWEVG-CSLVKIVYHRVN-GLLATVADDLVIRLFDVVAL--RMVRKFEG 555 (809)
Q Consensus 481 ~~~~~~~~l~s~~~dg~i~iwd~~-~~~~~~~~~~~-~~i~~~~~s~~~-~~la~~~~d~~I~v~d~~~~--~~~~~~~~ 555 (809)
.++|-+..++..+.|.++++|... ...++..+..+ ..++.++|||-. ..+|++..||.+.+||+... +++.+..-
T Consensus 405 ~~nPF~~k~fls~gDW~vriWs~~~~~~Pl~~~~~~~~~v~~vaWSptrpavF~~~d~~G~l~iWDLl~~~~~Pv~s~~~ 484 (555)
T KOG1587|consen 405 SRNPFYPKNFLSVGDWTVRIWSEDVIASPLLSLDSSPDYVTDVAWSPTRPAVFATVDGDGNLDIWDLLQDDEEPVLSQKV 484 (555)
T ss_pred ecCCCccceeeeeccceeEeccccCCCCcchhhhhccceeeeeEEcCcCceEEEEEcCCCceehhhhhccccCCcccccc
Confidence 999988666655559999999987 66666666655 459999999965 46777788999999998643 45555555
Q ss_pred CCCCeeeEEECCCCCEEEEEeCCCeEEEEEcCC
Q 003579 556 HTDRITDFCFSEDGKWLLSSGMDGSLRIWDVIL 588 (809)
Q Consensus 556 h~~~I~~l~fspdg~~l~s~s~D~~I~vwd~~~ 588 (809)
+....+.+.|+++|+.|+.|...|++.+|++..
T Consensus 485 ~~~~l~~~~~s~~g~~lavGd~~G~~~~~~l~~ 517 (555)
T KOG1587|consen 485 CSPALTRVRWSPNGKLLAVGDANGTTHILKLSE 517 (555)
T ss_pred cccccceeecCCCCcEEEEecCCCcEEEEEcCc
Confidence 667778888999999999999999999999964
No 198
>KOG1517 consensus Guanine nucleotide binding protein MIP1 [Cell cycle control, cell division, chromosome partitioning]
Probab=99.74 E-value=2.7e-16 Score=169.69 Aligned_cols=291 Identities=15% Similarity=0.224 Sum_probs=209.1
Q ss_pred cccEEEEeCCCCCCEEEEEeCCCeEEEEeCCCCceEEEEcCC---CCCEEEEEEcC--CCCEEEEEeCCCeEEEEEeeCC
Q 003579 139 FTPTCIMHPDTYLNKVIVGSQEGSLQLWNISTKKKLYEFKGW---GSSISSCVSSP--ALDVVAVGCSDGKIHVHNVRYD 213 (809)
Q Consensus 139 ~~~~~~~~p~~~~~~l~~~~~dg~i~lwd~~~~~~~~~~~~~---~~~I~~l~~sp--~~~~la~g~~dg~i~iwd~~~~ 213 (809)
....+.+||-. ..++++...-.|++||.+.++.+..|..+ ...|+.+.+-. |..++.+|+.||.|+||+--..
T Consensus 1066 ~pk~~~~hpf~--p~i~~ad~r~~i~vwd~e~~~~l~~F~n~~~~~t~Vs~l~liNe~D~aLlLtas~dGvIRIwk~y~~ 1143 (1387)
T KOG1517|consen 1066 PPKTLKFHPFE--PQIAAADDRERIRVWDWEKGRLLNGFDNGAFPDTRVSDLELINEQDDALLLTASSDGVIRIWKDYAD 1143 (1387)
T ss_pred CCceeeecCCC--ceeEEcCCcceEEEEecccCceeccccCCCCCCCccceeeeecccchhheeeeccCceEEEeccccc
Confidence 34566788877 78888887788999999999998888654 46788888865 4468999999999999974322
Q ss_pred -----eEEEEEec------cCCCcEEEEEEecCCCCEEEEEcCCCcEEEEECCCceeeeeeecccccceEEEEEec-CCC
Q 003579 214 -----EELVTFTH------SMRGAVTALAFSSDGQPLLASGASSGVISIWNLEKRRLQSVIREAHDNAIISLHFFA-NEP 281 (809)
Q Consensus 214 -----~~~~~~~~------~~~~~V~~l~fs~dg~~~lasg~~dg~I~iwdl~~~~~~~~~~~~h~~~V~~l~~~~-~~~ 281 (809)
+.+..+.. ...+.=.-+.|..... +|.+++.-..|+|||.........+..+....|+++.-.. .|+
T Consensus 1144 ~~~~~eLVTaw~~Ls~~~~~~r~~~~v~dWqQ~~G-~Ll~tGd~r~IRIWDa~~E~~~~diP~~s~t~vTaLS~~~~~gn 1222 (1387)
T KOG1517|consen 1144 KWKKPELVTAWSSLSDQLPGARGTGLVVDWQQQSG-HLLVTGDVRSIRIWDAHKEQVVADIPYGSSTLVTALSADLVHGN 1222 (1387)
T ss_pred ccCCceeEEeeccccccCccCCCCCeeeehhhhCC-eEEecCCeeEEEEEecccceeEeecccCCCccceeecccccCCc
Confidence 23332221 1011114456766655 4445555789999999999988888867777788887654 468
Q ss_pred EEEEEcCCCcEEEEEeeCCCCCceeEEeccCCCCC--CeeEEEecCCC-EEEEEECCCCEEEEEeeecccceecchhhHH
Q 003579 282 VLMSASADNSIKMWIFDTTDGDPRLLRFRSGHSAP--PLCIRFYANGR-HILSAGQDRAFRLFSVIQDQQSRELSQRHVA 358 (809)
Q Consensus 282 ~l~s~s~d~~i~vw~~~~~~~~~~~~~~~~~h~~~--v~~i~~~~~~~-~l~s~~~dg~i~~wd~~~~~~~~~~~~~~~~ 358 (809)
.++.|-.||+|++||.+..... ..+.....|... |..+.+-+.|- .|++|+.||.|++||++.......+.
T Consensus 1223 ~i~AGfaDGsvRvyD~R~a~~d-s~v~~~R~h~~~~~Iv~~slq~~G~~elvSgs~~G~I~~~DlR~~~~e~~~~----- 1296 (1387)
T KOG1517|consen 1223 IIAAGFADGSVRVYDRRMAPPD-SLVCVYREHNDVEPIVHLSLQRQGLGELVSGSQDGDIQLLDLRMSSKETFLT----- 1296 (1387)
T ss_pred eEEEeecCCceEEeecccCCcc-ccceeecccCCcccceeEEeecCCCcceeeeccCCeEEEEecccCcccccce-----
Confidence 9999999999999998876544 345555678877 99999988654 59999999999999987531100000
Q ss_pred HHHhhccchhhhhccCceeEEeeccccccccceeEEeecCCceEEEEEeeeeeecceeeecCCCCCCCeEEEEEcCCCCE
Q 003579 359 KRARKLKMKEEELKLKPVIAFDCAEIRERDWCNVVTCHMDTAQAYVWRLQNFVLGEHILRPCPENPTAVKACTISACGNF 438 (809)
Q Consensus 359 ~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~v~~v~~s~~g~~ 438 (809)
.+
T Consensus 1297 ----------------------------------------------------------------------iv-------- 1298 (1387)
T KOG1517|consen 1297 ----------------------------------------------------------------------IV-------- 1298 (1387)
T ss_pred ----------------------------------------------------------------------ee--------
Confidence 00
Q ss_pred EEEEeCCCcEEEEECCCCceeeeeeCcccccccCccccEEEEEEcCCCCEEEEEeCcCeEEEEECCCCceeeeeec----
Q 003579 439 AVLGTAGGWIERFNLQSGISRGSYLDMSERSNYAHNGEVVGVACDSTNTLMISAGYHGDIKVWDFKGRDLKSRWEV---- 514 (809)
Q Consensus 439 l~~g~~~g~i~i~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~---- 514 (809)
.-| .-.+..+++.+++....+++|+. +.|+||++...++......
T Consensus 1299 ----------~~~--------------------~yGs~lTal~VH~hapiiAsGs~-q~ikIy~~~G~~l~~~k~n~~F~ 1347 (1387)
T KOG1517|consen 1299 ----------AHW--------------------EYGSALTALTVHEHAPIIASGSA-QLIKIYSLSGEQLNIIKYNPGFM 1347 (1387)
T ss_pred ----------ecc--------------------ccCccceeeeeccCCCeeeecCc-ceEEEEecChhhhcccccCcccc
Confidence 000 11125788888888888888888 8899998775443222111
Q ss_pred ---CCCeEEEEEeeCCCEEEEEeCCCeEEEEEcCCC
Q 003579 515 ---GCSLVKIVYHRVNGLLATVADDLVIRLFDVVAL 547 (809)
Q Consensus 515 ---~~~i~~~~~s~~~~~la~~~~d~~I~v~d~~~~ 547 (809)
...+.+++|||..-++|+|+.|..|.||.....
T Consensus 1348 ~q~~gs~scL~FHP~~~llAaG~~Ds~V~iYs~~k~ 1383 (1387)
T KOG1517|consen 1348 GQRIGSVSCLAFHPHRLLLAAGSADSTVSIYSCEKP 1383 (1387)
T ss_pred cCcCCCcceeeecchhHhhhhccCCceEEEeecCCc
Confidence 167799999999999999999999999987654
No 199
>KOG1310 consensus WD40 repeat protein [General function prediction only]
Probab=99.74 E-value=2.1e-16 Score=158.87 Aligned_cols=226 Identities=19% Similarity=0.279 Sum_probs=162.7
Q ss_pred cCCCcEEEEEEecCCCCEEEEEcCCCcEEEEECCCceeeeeeecccccceEEEEEec--CCCEEEEEcCCCcEEEEEeeC
Q 003579 222 SMRGAVTALAFSSDGQPLLASGASSGVISIWNLEKRRLQSVIREAHDNAIISLHFFA--NEPVLMSASADNSIKMWIFDT 299 (809)
Q Consensus 222 ~~~~~V~~l~fs~dg~~~lasg~~dg~I~iwdl~~~~~~~~~~~~h~~~V~~l~~~~--~~~~l~s~s~d~~i~vw~~~~ 299 (809)
+|.+.|.|+.|+.+|. +|++|+.|-.+.|||.-..++++.+..+|...|.++.|.| +.+++++|..|..|+++|++.
T Consensus 48 GH~GCVN~LeWn~dG~-lL~SGSDD~r~ivWd~~~~KllhsI~TgHtaNIFsvKFvP~tnnriv~sgAgDk~i~lfdl~~ 126 (758)
T KOG1310|consen 48 GHTGCVNCLEWNADGE-LLASGSDDTRLIVWDPFEYKLLHSISTGHTANIFSVKFVPYTNNRIVLSGAGDKLIKLFDLDS 126 (758)
T ss_pred cccceecceeecCCCC-EEeecCCcceEEeecchhcceeeeeecccccceeEEeeeccCCCeEEEeccCcceEEEEeccc
Confidence 4589999999999999 9999999999999999999999999999999999999999 456999999999999999985
Q ss_pred CC------CCceeEEeccCCCCCCeeEEEecCC-CEEEEEECCCCEEEEEeeecccceecchhhHHHHHhhccchhhhhc
Q 003579 300 TD------GDPRLLRFRSGHSAPPLCIRFYANG-RHILSAGQDRAFRLFSVIQDQQSRELSQRHVAKRARKLKMKEEELK 372 (809)
Q Consensus 300 ~~------~~~~~~~~~~~h~~~v~~i~~~~~~-~~l~s~~~dg~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 372 (809)
.. +.....+....|...|..++-.|++ +.+.+++.||+++-+|++.......-....
T Consensus 127 ~~~~~~d~~~~~~~~~~~cht~rVKria~~p~~PhtfwsasEDGtirQyDiREph~c~p~~~~~---------------- 190 (758)
T KOG1310|consen 127 SKEGGMDHGMEETTRCWSCHTDRVKRIATAPNGPHTFWSASEDGTIRQYDIREPHVCNPDEDCP---------------- 190 (758)
T ss_pred ccccccccCccchhhhhhhhhhhhhheecCCCCCceEEEecCCcceeeecccCCccCCcccccc----------------
Confidence 32 2234455667899999999999988 788999999999999998754322110000
Q ss_pred cCceeEEeeccccccccceeEEeecCCceEEEEEeeeeeecceeeecCCCCCCCeEEEEEcCCC-CEEEEEeCCCcEEEE
Q 003579 373 LKPVIAFDCAEIRERDWCNVVTCHMDTAQAYVWRLQNFVLGEHILRPCPENPTAVKACTISACG-NFAVLGTAGGWIERF 451 (809)
Q Consensus 373 ~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~v~~v~~s~~g-~~l~~g~~~g~i~i~ 451 (809)
..+.......-...+++++|.. .++++|+++-..++|
T Consensus 191 ------------------------------------------~~l~ny~~~lielk~ltisp~rp~~laVGgsdpfarLY 228 (758)
T KOG1310|consen 191 ------------------------------------------SILVNYNPQLIELKCLTISPSRPYYLAVGGSDPFARLY 228 (758)
T ss_pred ------------------------------------------HHHHHhchhhheeeeeeecCCCCceEEecCCCchhhhh
Confidence 0000000111467788999954 789999999999999
Q ss_pred ECCCC--------ce----------eeeeeCcccccccC-cc---ccEEEEEEcCCCCEEEEEeCcCeEEEEECCCC
Q 003579 452 NLQSG--------IS----------RGSYLDMSERSNYA-HN---GEVVGVACDSTNTLMISAGYHGDIKVWDFKGR 506 (809)
Q Consensus 452 ~~~~~--------~~----------~~~~~~~~~~~~~~-h~---~~v~~l~~~~~~~~l~s~~~dg~i~iwd~~~~ 506 (809)
|.+.. .. ...|.........+ -. ..++-++|+|+|.-|+..-....|+++|+..+
T Consensus 229 D~Rr~lks~~s~~~~~~~pp~~~~cv~yf~p~hlkn~~gn~~~~~~~~t~vtfnpNGtElLvs~~gEhVYlfdvn~~ 305 (758)
T KOG1310|consen 229 DRRRVLKSFRSDGTMNTCPPKDCRCVRYFSPGHLKNSQGNLDRYITCCTYVTFNPNGTELLVSWGGEHVYLFDVNED 305 (758)
T ss_pred hhhhhccCCCCCccccCCCCcccchhheecCccccCcccccccceeeeEEEEECCCCcEEEEeeCCeEEEEEeecCC
Confidence 94211 10 11111000000001 01 12567889999977776666678999987654
No 200
>PF02239 Cytochrom_D1: Cytochrome D1 heme domain; PDB: 1NNO_B 1HZU_A 1N15_B 1N50_A 1GJQ_A 1BL9_B 1NIR_B 1N90_B 1HZV_A 1AOQ_A ....
Probab=99.74 E-value=6.5e-15 Score=154.04 Aligned_cols=327 Identities=13% Similarity=0.084 Sum_probs=208.1
Q ss_pred EEEeCCCcEEEEEcCCCccccceeeeEEcCCccccEEEEeCCCCCCEEEEEeCCCeEEEEeCCCCceEEEEcCCCCCEEE
Q 003579 107 LSIDIDGNMFIWAFKGIEENLAPVGHVKLDDKFTPTCIMHPDTYLNKVIVGSQEGSLQLWNISTKKKLYEFKGWGSSISS 186 (809)
Q Consensus 107 ~s~~~dg~i~vWd~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~l~~~~~dg~i~lwd~~~~~~~~~~~~~~~~I~~ 186 (809)
++-..+|.|.|.|..+.+. +.++......-....++|++ +++++++.||.|.++|+.+++.+.+++. .....+
T Consensus 10 V~~~~~~~v~viD~~t~~~----~~~i~~~~~~h~~~~~s~Dg--r~~yv~~rdg~vsviD~~~~~~v~~i~~-G~~~~~ 82 (369)
T PF02239_consen 10 VVERGSGSVAVIDGATNKV----VARIPTGGAPHAGLKFSPDG--RYLYVANRDGTVSVIDLATGKVVATIKV-GGNPRG 82 (369)
T ss_dssp EEEGGGTEEEEEETTT-SE----EEEEE-STTEEEEEE-TT-S--SEEEEEETTSEEEEEETTSSSEEEEEE--SSEEEE
T ss_pred EEecCCCEEEEEECCCCeE----EEEEcCCCCceeEEEecCCC--CEEEEEcCCCeEEEEECCcccEEEEEec-CCCcce
Confidence 4455689999999999887 77887655544556789999 8899999999999999999999999986 455788
Q ss_pred EEEcCCCCEEEEEe-CCCeEEEEEeeCCeEEEEEecc------CCCcEEEEEEecCCCCEEEEEcCCCcEEEEECCCcee
Q 003579 187 CVSSPALDVVAVGC-SDGKIHVHNVRYDEELVTFTHS------MRGAVTALAFSSDGQPLLASGASSGVISIWNLEKRRL 259 (809)
Q Consensus 187 l~~sp~~~~la~g~-~dg~i~iwd~~~~~~~~~~~~~------~~~~V~~l~fs~dg~~~lasg~~dg~I~iwdl~~~~~ 259 (809)
+++|+||++++++. ..+.+.++|.++.+.+..+... ....+.++..++....++++--..+.|.+.|....+.
T Consensus 83 i~~s~DG~~~~v~n~~~~~v~v~D~~tle~v~~I~~~~~~~~~~~~Rv~aIv~s~~~~~fVv~lkd~~~I~vVdy~d~~~ 162 (369)
T PF02239_consen 83 IAVSPDGKYVYVANYEPGTVSVIDAETLEPVKTIPTGGMPVDGPESRVAAIVASPGRPEFVVNLKDTGEIWVVDYSDPKN 162 (369)
T ss_dssp EEE--TTTEEEEEEEETTEEEEEETTT--EEEEEE--EE-TTTS---EEEEEE-SSSSEEEEEETTTTEEEEEETTTSSC
T ss_pred EEEcCCCCEEEEEecCCCceeEeccccccceeecccccccccccCCCceeEEecCCCCEEEEEEccCCeEEEEEeccccc
Confidence 99999999999875 5799999999999999888643 1346888888888874555555668999999877654
Q ss_pred eeeeecccccceEEEEEecCCCEEEEE-cCCCcEEEEEeeCCCCCceeEEec----cCCCCCCeeEEEecCCCEEEEEEC
Q 003579 260 QSVIREAHDNAIISLHFFANEPVLMSA-SADNSIKMWIFDTTDGDPRLLRFR----SGHSAPPLCIRFYANGRHILSAGQ 334 (809)
Q Consensus 260 ~~~~~~~h~~~V~~l~~~~~~~~l~s~-s~d~~i~vw~~~~~~~~~~~~~~~----~~h~~~v~~i~~~~~~~~l~s~~~ 334 (809)
+...............|.|++++++.+ ..++.|-++|.... .+.... ..|..+...+ .+|....+...+.
T Consensus 163 ~~~~~i~~g~~~~D~~~dpdgry~~va~~~sn~i~viD~~~~----k~v~~i~~g~~p~~~~~~~~-php~~g~vw~~~~ 237 (369)
T PF02239_consen 163 LKVTTIKVGRFPHDGGFDPDGRYFLVAANGSNKIAVIDTKTG----KLVALIDTGKKPHPGPGANF-PHPGFGPVWATSG 237 (369)
T ss_dssp EEEEEEE--TTEEEEEE-TTSSEEEEEEGGGTEEEEEETTTT----EEEEEEE-SSSBEETTEEEE-EETTTEEEEEEEB
T ss_pred cceeeecccccccccccCcccceeeecccccceeEEEeeccc----eEEEEeeccccccccccccc-cCCCcceEEeecc
Confidence 433222345567789999999977664 55678888875543 222211 1233333322 2232211111111
Q ss_pred CCCEEEEEeeecccceecchhhHHHHHhhccchhhhhccCceeEEeeccccccccceeEEeecCCceEEEEEeeeeeecc
Q 003579 335 DRAFRLFSVIQDQQSRELSQRHVAKRARKLKMKEEELKLKPVIAFDCAEIRERDWCNVVTCHMDTAQAYVWRLQNFVLGE 414 (809)
Q Consensus 335 dg~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~ 414 (809)
.+.
T Consensus 238 ~~~----------------------------------------------------------------------------- 240 (369)
T PF02239_consen 238 LGY----------------------------------------------------------------------------- 240 (369)
T ss_dssp SSS-----------------------------------------------------------------------------
T ss_pred ccc-----------------------------------------------------------------------------
Confidence 111
Q ss_pred eeeecCCCCCCCeEEEEEcCCCCEEEEEeCCCcEEEEECCCCceeeeeeCcccccccCccccEEEEEEcCCCCEEEEE--
Q 003579 415 HILRPCPENPTAVKACTISACGNFAVLGTAGGWIERFNLQSGISRGSYLDMSERSNYAHNGEVVGVACDSTNTLMISA-- 492 (809)
Q Consensus 415 ~~~~~~~~~~~~v~~v~~s~~g~~l~~g~~~g~i~i~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~l~s~-- 492 (809)
+.+..-..+.+.+|+..+.+..+.+. ...+. ..+..+|+++++...
T Consensus 241 -----------------------~~~~~ig~~~v~v~d~~~wkvv~~I~--------~~G~g-lFi~thP~s~~vwvd~~ 288 (369)
T PF02239_consen 241 -----------------------FAIPLIGTDPVSVHDDYAWKVVKTIP--------TQGGG-LFIKTHPDSRYVWVDTF 288 (369)
T ss_dssp -----------------------SEEEEEE--TTT-STTTBTSEEEEEE---------SSSS---EE--TT-SEEEEE-T
T ss_pred -----------------------eecccccCCccccchhhcCeEEEEEE--------CCCCc-ceeecCCCCccEEeecc
Confidence 11111111233355666666666654 33344 778889999999988
Q ss_pred --eCcCeEEEEECCCCceeeeeecCC--CeEEEEEeeCCCEEEEEeC--CCeEEEEEcCCCeEEEEEe
Q 003579 493 --GYHGDIKVWDFKGRDLKSRWEVGC--SLVKIVYHRVNGLLATVAD--DLVIRLFDVVALRMVRKFE 554 (809)
Q Consensus 493 --~~dg~i~iwd~~~~~~~~~~~~~~--~i~~~~~s~~~~~la~~~~--d~~I~v~d~~~~~~~~~~~ 554 (809)
...+.|.++|.++.+....+.... .+..+.|+++|+.+.++.. ++.|.+||..+.+.+.++.
T Consensus 289 ~~~~~~~v~viD~~tl~~~~~i~~~~~~~~~h~ef~~dG~~v~vS~~~~~~~i~v~D~~Tl~~~~~i~ 356 (369)
T PF02239_consen 289 LNPDADTVQVIDKKTLKVVKTITPGPGKRVVHMEFNPDGKEVWVSVWDGNGAIVVYDAKTLKEKKRIP 356 (369)
T ss_dssp T-SSHT-EEEEECCGTEEEE-HHHHHT--EEEEEE-TTSSEEEEEEE--TTEEEEEETTTTEEEEEEE
T ss_pred CCCCCceEEEEECcCcceeEEEeccCCCcEeccEECCCCCEEEEEEecCCCEEEEEECCCcEEEEEEE
Confidence 456899999999998888876554 4999999999997766644 3479999999999998887
No 201
>KOG1334 consensus WD40 repeat protein [General function prediction only]
Probab=99.74 E-value=2.2e-17 Score=163.97 Aligned_cols=293 Identities=20% Similarity=0.326 Sum_probs=223.1
Q ss_pred EEeccCCCcEEEEEEecCCCCEEEEEcCCCcEEEEECCCceeeeeeecccccceEEEEEecC--CCEEEEEcCCCcEEEE
Q 003579 218 TFTHSMRGAVTALAFSSDGQPLLASGASSGVISIWNLEKRRLQSVIREAHDNAIISLHFFAN--EPVLMSASADNSIKMW 295 (809)
Q Consensus 218 ~~~~~~~~~V~~l~fs~dg~~~lasg~~dg~I~iwdl~~~~~~~~~~~~h~~~V~~l~~~~~--~~~l~s~s~d~~i~vw 295 (809)
.+.. |.+.|..+.|...|. .|++|+.|..|.+||+..++....+..+|...|....|.|. ...+++++.||.+++=
T Consensus 137 kL~~-H~GcVntV~FN~~Gd-~l~SgSDD~~vv~WdW~~~~~~l~f~SGH~~NvfQaKFiP~s~d~ti~~~s~dgqvr~s 214 (559)
T KOG1334|consen 137 KLNK-HKGCVNTVHFNQRGD-VLASGSDDLQVVVWDWVSGSPKLSFESGHCNNVFQAKFIPFSGDRTIVTSSRDGQVRVS 214 (559)
T ss_pred cccC-CCCccceeeecccCc-eeeccCccceEEeehhhccCcccccccccccchhhhhccCCCCCcCceeccccCceeee
Confidence 3444 489999999999999 99999999999999999999988888899999999999884 4589999999999998
Q ss_pred EeeCCCCCceeEEeccCCCCCCeeEEEecC-CCEEEEEECCCCEEEEEeeecccceecchhhHHHHHhhccchhhhhccC
Q 003579 296 IFDTTDGDPRLLRFRSGHSAPPLCIRFYAN-GRHILSAGQDRAFRLFSVIQDQQSRELSQRHVAKRARKLKMKEEELKLK 374 (809)
Q Consensus 296 ~~~~~~~~~~~~~~~~~h~~~v~~i~~~~~-~~~l~s~~~dg~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 374 (809)
.+...... .-......|.++|..++..|+ -..|++++.|+.+.-+|++.+.....+..
T Consensus 215 ~i~~t~~~-e~t~rl~~h~g~vhklav~p~sp~~f~S~geD~~v~~~Dlr~~~pa~~~~c-------------------- 273 (559)
T KOG1334|consen 215 EILETGYV-ENTKRLAPHEGPVHKLAVEPDSPKPFLSCGEDAVVFHIDLRQDVPAEKFVC-------------------- 273 (559)
T ss_pred eeccccce-ecceecccccCccceeeecCCCCCcccccccccceeeeeeccCCccceeee--------------------
Confidence 76654322 223455689999999999994 46788999999999999876543222110
Q ss_pred ceeEEeeccccccccceeEEeecCCceEEEEEeeeeeecceeeecCCCCCCCeEEEEEcCCCCEEEEEeCCCcEEEEECC
Q 003579 375 PVIAFDCAEIRERDWCNVVTCHMDTAQAYVWRLQNFVLGEHILRPCPENPTAVKACTISACGNFAVLGTAGGWIERFNLQ 454 (809)
Q Consensus 375 ~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~v~~v~~s~~g~~l~~g~~~g~i~i~~~~ 454 (809)
-
T Consensus 274 ---------------------r---------------------------------------------------------- 274 (559)
T KOG1334|consen 274 ---------------------R---------------------------------------------------------- 274 (559)
T ss_pred ---------------------e----------------------------------------------------------
Confidence 0
Q ss_pred CCceeeeeeCcccccccCccc---cEEEEEEcCCCC-EEEEEeCcCeEEEEECCCCcee------eee-------ecCCC
Q 003579 455 SGISRGSYLDMSERSNYAHNG---EVVGVACDSTNT-LMISAGYHGDIKVWDFKGRDLK------SRW-------EVGCS 517 (809)
Q Consensus 455 ~~~~~~~~~~~~~~~~~~h~~---~v~~l~~~~~~~-~l~s~~~dg~i~iwd~~~~~~~------~~~-------~~~~~ 517 (809)
..+.. ....++.+|.+. .+++++.|..+++||...-... ..+ .....
T Consensus 275 ----------------~~~~~~~v~L~~Ia~~P~nt~~faVgG~dqf~RvYD~R~~~~e~~n~~~~~f~p~hl~~d~~v~ 338 (559)
T KOG1334|consen 275 ----------------EADEKERVGLYTIAVDPRNTNEFAVGGSDQFARVYDQRRIDKEENNGVLDKFCPHHLVEDDPVN 338 (559)
T ss_pred ----------------ccCCccceeeeeEecCCCCccccccCChhhhhhhhcccchhhccccchhhhcCCccccccCccc
Confidence 01111 345666677654 6777788888888876532111 111 22367
Q ss_pred eEEEEEeeCCCEEEEEeCCCeEEEEEcCC--C----------eEEE-EEecCCCC--eeeEE-ECCCCCEEEEEeCCCeE
Q 003579 518 LVKIVYHRVNGLLATVADDLVIRLFDVVA--L----------RMVR-KFEGHTDR--ITDFC-FSEDGKWLLSSGMDGSL 581 (809)
Q Consensus 518 i~~~~~s~~~~~la~~~~d~~I~v~d~~~--~----------~~~~-~~~~h~~~--I~~l~-fspdg~~l~s~s~D~~I 581 (809)
|++++|+.++.-+.++..|-.|+++.-.- + ..+. .++||... |..+- |-|...|+++||.=|.|
T Consensus 339 ITgl~Ysh~~sElLaSYnDe~IYLF~~~~~~G~~p~~~s~~~~~~k~vYKGHrN~~TVKgVNFfGPrsEyVvSGSDCGhI 418 (559)
T KOG1334|consen 339 ITGLVYSHDGSELLASYNDEDIYLFNKSMGDGSEPDPSSPREQYVKRVYKGHRNSRTVKGVNFFGPRSEYVVSGSDCGHI 418 (559)
T ss_pred ceeEEecCCccceeeeecccceEEeccccccCCCCCCCcchhhccchhhcccccccccceeeeccCccceEEecCccceE
Confidence 99999998887777777888899995322 2 2233 38899754 55555 47788999999999999
Q ss_pred EEEEcCCccEEEEeeeCcc-eEEEEEcCCCCeEEEEEeCCCeEEEeecC
Q 003579 582 RIWDVILARQIDAIHVDVS-ITALSLSPNMDVLATAHVDQNGVYLWVNR 629 (809)
Q Consensus 582 ~vwd~~~~~~i~~~~~~~~-v~~l~~spdg~~lat~~~d~~~i~lW~~~ 629 (809)
.||+-.+++.|..+.+... |.|+.-+|--..||+++-|. -|+||...
T Consensus 419 FiW~K~t~eii~~MegDr~VVNCLEpHP~~PvLAsSGid~-DVKIWTP~ 466 (559)
T KOG1334|consen 419 FIWDKKTGEIIRFMEGDRHVVNCLEPHPHLPVLASSGIDH-DVKIWTPL 466 (559)
T ss_pred EEEecchhHHHHHhhcccceEeccCCCCCCchhhccCCcc-ceeeecCC
Confidence 9999999999998877554 99999999999999999999 59999863
No 202
>KOG2110 consensus Uncharacterized conserved protein, contains WD40 repeats [Function unknown]
Probab=99.73 E-value=2e-14 Score=138.63 Aligned_cols=272 Identities=15% Similarity=0.243 Sum_probs=196.5
Q ss_pred cCCeEEEEEEcCCeEEEEEcCccEEEEecCCCCCCcEEEEEeCCeEEEEECCe---EEEEEC--CeeEEEEccccccEEE
Q 003579 24 LGTENFVTVSVGKAFHIYNCAKLNLVLVGPQLPKKIRALASYRDYTFAAYGNH---IAVVKR--AHQVATWSRHSAKVNL 98 (809)
Q Consensus 24 ~~~~~~i~~~~~~~i~iwd~~~~~~~~~~~~~~~~I~~la~~~~~~~~a~g~~---i~vw~~--~~~~~~~~~h~~~V~~ 98 (809)
..+..+++.+.-.-.++|.+......+........|--+-|+-..+.++.-.+ +.+.+. ...+..+. -..+|.+
T Consensus 14 Nqd~~~lsvGs~~Gyk~~~~~~~~k~~~~~~~~~~IvEmLFSSSLvaiV~~~qpr~Lkv~~~Kk~~~ICe~~-fpt~IL~ 92 (391)
T KOG2110|consen 14 NQDSTLLSVGSKDGYKIFSCSPFEKCFSKDTEGVSIVEMLFSSSLVAIVSIKQPRKLKVVHFKKKTTICEIF-FPTSILA 92 (391)
T ss_pred ccceeEEEccCCCceeEEecCchHHhhcccCCCeEEEEeecccceeEEEecCCCceEEEEEcccCceEEEEe-cCCceEE
Confidence 34455555555555889998875553333334556777778877776666433 666654 33444422 2346889
Q ss_pred EEEeCCEEEEEeCCCcEEEEEcCCCccccceeeeEEcC-CccccEEEEeCCCCCCEEEEE--eCCCeEEEEeCCCCceEE
Q 003579 99 LLLFGEHILSIDIDGNMFIWAFKGIEENLAPVGHVKLD-DKFTPTCIMHPDTYLNKVIVG--SQEGSLQLWNISTKKKLY 175 (809)
Q Consensus 99 l~~~g~~l~s~~~dg~i~vWd~~~~~~~~~~~~~~~~~-~~~~~~~~~~p~~~~~~l~~~--~~dg~i~lwd~~~~~~~~ 175 (809)
|...-++|+.+-.+. |.|+|+.+.+. +.++... ......|+++|+....+++.- ...|.|.+||..+.+.+.
T Consensus 93 VrmNr~RLvV~Lee~-IyIydI~~Mkl----LhTI~t~~~n~~gl~AlS~n~~n~ylAyp~s~t~GdV~l~d~~nl~~v~ 167 (391)
T KOG2110|consen 93 VRMNRKRLVVCLEES-IYIYDIKDMKL----LHTIETTPPNPKGLCALSPNNANCYLAYPGSTTSGDVVLFDTINLQPVN 167 (391)
T ss_pred EEEccceEEEEEccc-EEEEeccccee----ehhhhccCCCccceEeeccCCCCceEEecCCCCCceEEEEEcccceeee
Confidence 999999999987544 99999999887 5555544 444457888887744567653 346899999999999999
Q ss_pred EEcCCCCCEEEEEEcCCCCEEEEEeCCCe-EEEEEeeCCeEEEEEeccCC-CcEEEEEEecCCCCEEEEEcCCCcEEEEE
Q 003579 176 EFKGWGSSISSCVSSPALDVVAVGCSDGK-IHVHNVRYDEELVTFTHSMR-GAVTALAFSSDGQPLLASGASSGVISIWN 253 (809)
Q Consensus 176 ~~~~~~~~I~~l~~sp~~~~la~g~~dg~-i~iwd~~~~~~~~~~~~~~~-~~V~~l~fs~dg~~~lasg~~dg~I~iwd 253 (809)
.+..|.+.+-|++|+++|.+||+++..|+ |||+.+.+|+.+.+|+.+.. ..|.+++|+|+++ +|++.+..++|.+|.
T Consensus 168 ~I~aH~~~lAalafs~~G~llATASeKGTVIRVf~v~~G~kl~eFRRG~~~~~IySL~Fs~ds~-~L~~sS~TeTVHiFK 246 (391)
T KOG2110|consen 168 TINAHKGPLAALAFSPDGTLLATASEKGTVIRVFSVPEGQKLYEFRRGTYPVSIYSLSFSPDSQ-FLAASSNTETVHIFK 246 (391)
T ss_pred EEEecCCceeEEEECCCCCEEEEeccCceEEEEEEcCCccEeeeeeCCceeeEEEEEEECCCCC-eEEEecCCCeEEEEE
Confidence 99999999999999999999999999987 69999999999999997632 4789999999999 888888999999998
Q ss_pred CCCceee-------------------------------------eeeeccccc--ceEEEEEecCCCEEEEEcCCCcEEE
Q 003579 254 LEKRRLQ-------------------------------------SVIREAHDN--AIISLHFFANEPVLMSASADNSIKM 294 (809)
Q Consensus 254 l~~~~~~-------------------------------------~~~~~~h~~--~V~~l~~~~~~~~l~s~s~d~~i~v 294 (809)
++....- ...+....+ .+..+.-.+..+++..++.||.+..
T Consensus 247 L~~~~~~~~~~p~~~~~~~~~~sk~~~sylps~V~~~~~~~R~FAt~~l~~s~~~~~~~l~~~~~~~~v~vas~dG~~y~ 326 (391)
T KOG2110|consen 247 LEKVSNNPPESPTAGTSWFGKVSKAATSYLPSQVSSVLDQSRKFATAKLPESGRKNICSLSSIQKIPRVLVASYDGHLYS 326 (391)
T ss_pred ecccccCCCCCCCCCCcccchhhhhhhhhcchhhhhhhhhccceeEEEccCCCccceEEeeccCCCCEEEEEEcCCeEEE
Confidence 8643100 000000011 2222222246678888999999999
Q ss_pred EEeeCCCC
Q 003579 295 WIFDTTDG 302 (809)
Q Consensus 295 w~~~~~~~ 302 (809)
|.++..++
T Consensus 327 y~l~~~~g 334 (391)
T KOG2110|consen 327 YRLPPKEG 334 (391)
T ss_pred EEcCCCCC
Confidence 98887643
No 203
>KOG0644 consensus Uncharacterized conserved protein, contains WD40 repeat and BROMO domains [General function prediction only]
Probab=99.73 E-value=1.2e-17 Score=175.59 Aligned_cols=275 Identities=19% Similarity=0.336 Sum_probs=200.8
Q ss_pred CCCcEEEEEEecCCCCEEEEEcCCCcEEEEECCCceeeeeeecccccceEEEEEecCCCEEEEEcCCCcEEEEEeeCCCC
Q 003579 223 MRGAVTALAFSSDGQPLLASGASSGVISIWNLEKRRLQSVIREAHDNAIISLHFFANEPVLMSASADNSIKMWIFDTTDG 302 (809)
Q Consensus 223 ~~~~V~~l~fs~dg~~~lasg~~dg~I~iwdl~~~~~~~~~~~~h~~~V~~l~~~~~~~~l~s~s~d~~i~vw~~~~~~~ 302 (809)
|...|+|+.|...|. ++++|+.|..++||..+++.++...+ +|.+.|+.++.+.+..++++++.|..|++|.+...
T Consensus 189 H~naVyca~fDrtg~-~Iitgsdd~lvKiwS~et~~~lAs~r-Ghs~ditdlavs~~n~~iaaaS~D~vIrvWrl~~~-- 264 (1113)
T KOG0644|consen 189 HRNAVYCAIFDRTGR-YIITGSDDRLVKIWSMETARCLASCR-GHSGDITDLAVSSNNTMIAAASNDKVIRVWRLPDG-- 264 (1113)
T ss_pred hhhheeeeeeccccc-eEeecCccceeeeeeccchhhhccCC-CCccccchhccchhhhhhhhcccCceEEEEecCCC--
Confidence 477899999999998 89999999999999999999999999 99999999999999999999999999999977655
Q ss_pred CceeEEeccCCCCCCeeEEEecCCCEEEEEECCCCEEEEEeeecccceecchhhHHHHHhhccchhhhhccCceeEEeec
Q 003579 303 DPRLLRFRSGHSAPPLCIRFYANGRHILSAGQDRAFRLFSVIQDQQSRELSQRHVAKRARKLKMKEEELKLKPVIAFDCA 382 (809)
Q Consensus 303 ~~~~~~~~~~h~~~v~~i~~~~~~~~l~s~~~dg~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~ 382 (809)
.++..+.||.+.|++++|+|-. +.+.||++++||.+-...... .
T Consensus 265 --~pvsvLrghtgavtaiafsP~~----sss~dgt~~~wd~r~~~~~y~--p---------------------------- 308 (1113)
T KOG0644|consen 265 --APVSVLRGHTGAVTAIAFSPRA----SSSDDGTCRIWDARLEPRIYV--P---------------------------- 308 (1113)
T ss_pred --chHHHHhccccceeeeccCccc----cCCCCCceEeccccccccccC--C----------------------------
Confidence 4667778999999999999954 778899999999751100000 0
Q ss_pred cccccccceeEEeecCCceEEEEEeeeeeecceeeecCCCCCCCeEEEEEcCCCCEEEEEeCCCcEEEEECCCCceeeee
Q 003579 383 EIRERDWCNVVTCHMDTAQAYVWRLQNFVLGEHILRPCPENPTAVKACTISACGNFAVLGTAGGWIERFNLQSGISRGSY 462 (809)
Q Consensus 383 ~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~v~~v~~s~~g~~l~~g~~~g~i~i~~~~~~~~~~~~ 462 (809)
++..
T Consensus 309 -----------------------------------rp~~----------------------------------------- 312 (1113)
T KOG0644|consen 309 -----------------------------------RPLK----------------------------------------- 312 (1113)
T ss_pred -----------------------------------CCCC-----------------------------------------
Confidence 0000
Q ss_pred eCcccccccCccccEEEEEEcCCCCEEEEEeCcCeEEEEECCCCceeeeeecCCCeEEEEEeeC-CCEEEEEeCCCeEEE
Q 003579 463 LDMSERSNYAHNGEVVGVACDSTNTLMISAGYHGDIKVWDFKGRDLKSRWEVGCSLVKIVYHRV-NGLLATVADDLVIRL 541 (809)
Q Consensus 463 ~~~~~~~~~~h~~~v~~l~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~i~~~~~s~~-~~~la~~~~d~~I~v 541 (809)
.....-+.++.+...+..++|++.|+.-..|.+....... ..+.-+..+.+ +.+.+++-.+..+.+
T Consensus 313 --------~~~~~~~~s~~~~~~~~~f~Tgs~d~ea~n~e~~~l~~~~-----~~lif~t~ssd~~~~~~~ar~~~~~~v 379 (1113)
T KOG0644|consen 313 --------FTEKDLVDSILFENNGDRFLTGSRDGEARNHEFEQLAWRS-----NLLIFVTRSSDLSSIVVTARNDHRLCV 379 (1113)
T ss_pred --------cccccceeeeeccccccccccccCCcccccchhhHhhhhc-----cceEEEeccccccccceeeeeeeEeee
Confidence 0011222333333444445555555555544433111000 00000000001 134555666788999
Q ss_pred EEcCCCeEEEEEecCCCCeeeEEECCCC-CEEEEEeCCCeEEEEEcCCccEEEEee-eCcceEEEEEcCCCCeEEEEEeC
Q 003579 542 FDVVALRMVRKFEGHTDRITDFCFSEDG-KWLLSSGMDGSLRIWDVILARQIDAIH-VDVSITALSLSPNMDVLATAHVD 619 (809)
Q Consensus 542 ~d~~~~~~~~~~~~h~~~I~~l~fspdg-~~l~s~s~D~~I~vwd~~~~~~i~~~~-~~~~v~~l~~spdg~~lat~~~d 619 (809)
|++.++..++.+.+|...+..+.++|-+ +...+++.||...|||+-.|.+++.+. .|..+..-+||+||..++....-
T Consensus 380 wnl~~g~l~H~l~ghsd~~yvLd~Hpfn~ri~msag~dgst~iwdi~eg~pik~y~~gh~kl~d~kFSqdgts~~lsd~h 459 (1113)
T KOG0644|consen 380 WNLYTGQLLHNLMGHSDEVYVLDVHPFNPRIAMSAGYDGSTIIWDIWEGIPIKHYFIGHGKLVDGKFSQDGTSIALSDDH 459 (1113)
T ss_pred eecccchhhhhhcccccceeeeeecCCCcHhhhhccCCCceEeeecccCCcceeeecccceeeccccCCCCceEecCCCC
Confidence 9999999999999999999999999955 555699999999999999999887765 45668899999999988877655
Q ss_pred CCeEEEee
Q 003579 620 QNGVYLWV 627 (809)
Q Consensus 620 ~~~i~lW~ 627 (809)
| .++|..
T Consensus 460 g-ql~i~g 466 (1113)
T KOG0644|consen 460 G-QLYILG 466 (1113)
T ss_pred C-ceEEec
Confidence 5 577774
No 204
>KOG2139 consensus WD40 repeat protein [General function prediction only]
Probab=99.72 E-value=2.6e-15 Score=143.93 Aligned_cols=305 Identities=18% Similarity=0.252 Sum_probs=199.1
Q ss_pred CCCEEEEEEcCCCCEEEEEeCCCeEEEEEeeCCeEEEEEeccCCCcEEEEEEecCCCCEEEEEcCCCcEEEEECCCc---
Q 003579 181 GSSISSCVSSPALDVVAVGCSDGKIHVHNVRYDEELVTFTHSMRGAVTALAFSSDGQPLLASGASSGVISIWNLEKR--- 257 (809)
Q Consensus 181 ~~~I~~l~~sp~~~~la~g~~dg~i~iwd~~~~~~~~~~~~~~~~~V~~l~fs~dg~~~lasg~~dg~I~iwdl~~~--- 257 (809)
...+..++|++.-..+|++..|-.|++||-.. +....++...+..|+|++|.|.+...|++|+.. -|.+|.....
T Consensus 98 ~~dlr~~aWhqH~~~fava~nddvVriy~kss-t~pt~Lks~sQrnvtclawRPlsaselavgCr~-gIciW~~s~tln~ 175 (445)
T KOG2139|consen 98 EIDLRGVAWHQHIIAFAVATNDDVVRIYDKSS-TCPTKLKSVSQRNVTCLAWRPLSASELAVGCRA-GICIWSDSRTLNA 175 (445)
T ss_pred hcceeeEeechhhhhhhhhccCcEEEEeccCC-CCCceecchhhcceeEEEeccCCcceeeeeecc-eeEEEEcCccccc
Confidence 34577889999877889999999999999765 666667666677899999999987789999865 4999976532
Q ss_pred -ee--------eeeeecccccceEEEEEecCCCEEEEEcC-CCcEEEEEeeCCCCCceeEEeccCCCCCCeeEEEecCCC
Q 003579 258 -RL--------QSVIREAHDNAIISLHFFANEPVLMSASA-DNSIKMWIFDTTDGDPRLLRFRSGHSAPPLCIRFYANGR 327 (809)
Q Consensus 258 -~~--------~~~~~~~h~~~V~~l~~~~~~~~l~s~s~-d~~i~vw~~~~~~~~~~~~~~~~~h~~~v~~i~~~~~~~ 327 (809)
+. ...++.....+|++++|.+||..+++++. |.+|.+||.+.+...+ +. ..-.+.+.-+.|+|||.
T Consensus 176 ~r~~~~~s~~~~qvl~~pgh~pVtsmqwn~dgt~l~tAS~gsssi~iWdpdtg~~~p--L~--~~glgg~slLkwSPdgd 251 (445)
T KOG2139|consen 176 NRNIRMMSTHHLQVLQDPGHNPVTSMQWNEDGTILVTASFGSSSIMIWDPDTGQKIP--LI--PKGLGGFSLLKWSPDGD 251 (445)
T ss_pred ccccccccccchhheeCCCCceeeEEEEcCCCCEEeecccCcceEEEEcCCCCCccc--cc--ccCCCceeeEEEcCCCC
Confidence 11 11122112268999999999999999886 6889999988875433 22 23345688999999999
Q ss_pred EEEEEECCCCEEEEEeeecccceecchhhHHHHHhhccchhhhhccCceeEEeeccccccccceeEEeecCCceEEEEEe
Q 003579 328 HILSAGQDRAFRLFSVIQDQQSRELSQRHVAKRARKLKMKEEELKLKPVIAFDCAEIRERDWCNVVTCHMDTAQAYVWRL 407 (809)
Q Consensus 328 ~l~s~~~dg~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~ 407 (809)
+|+.+.-|+..++|...+.- ..
T Consensus 252 ~lfaAt~davfrlw~e~q~w----------------------------------------------------------t~ 273 (445)
T KOG2139|consen 252 VLFAATCDAVFRLWQENQSW----------------------------------------------------------TK 273 (445)
T ss_pred EEEEecccceeeeehhcccc----------------------------------------------------------ee
Confidence 99999999999999643221 11
Q ss_pred eeeeecceeeecCCCCCCCeEEEEEcCCCCEEEEEeCCCcEEEEECCCCceeeeeeCcccccccCccccEEEEEEcCCCC
Q 003579 408 QNFVLGEHILRPCPENPTAVKACTISACGNFAVLGTAGGWIERFNLQSGISRGSYLDMSERSNYAHNGEVVGVACDSTNT 487 (809)
Q Consensus 408 ~~~~~~~~~~~~~~~~~~~v~~v~~s~~g~~l~~g~~~g~i~i~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~ 487 (809)
. ++.+ ..+.|...+|+|||++++...... - .+.++.|+....
T Consensus 274 e-----rw~l-----gsgrvqtacWspcGsfLLf~~sgs-p---------------------------~lysl~f~~~~~ 315 (445)
T KOG2139|consen 274 E-----RWIL-----GSGRVQTACWSPCGSFLLFACSGS-P---------------------------RLYSLTFDGEDS 315 (445)
T ss_pred c-----ceec-----cCCceeeeeecCCCCEEEEEEcCC-c---------------------------eEEEEeecCCCc
Confidence 1 1111 125899999999999998775432 2 233344432221
Q ss_pred EEE-EEeCcCeEEEEECCCCceee-eeecCCCeEEEEEeeCCCEEEEEeCCC--------eEEEEEcCCCeEEEEE-ecC
Q 003579 488 LMI-SAGYHGDIKVWDFKGRDLKS-RWEVGCSLVKIVYHRVNGLLATVADDL--------VIRLFDVVALRMVRKF-EGH 556 (809)
Q Consensus 488 ~l~-s~~~dg~i~iwd~~~~~~~~-~~~~~~~i~~~~~s~~~~~la~~~~d~--------~I~v~d~~~~~~~~~~-~~h 556 (809)
.+. .++....+-+-|+..-.... .....+++.+++|.|.|.++|+....+ .|.+||....-.+.-. -|-
T Consensus 316 ~~~~~~~~k~~lliaDL~e~ti~ag~~l~cgeaq~lawDpsGeyLav~fKg~~~v~~~k~~i~~fdtr~sp~vels~cg~ 395 (445)
T KOG2139|consen 316 VFLRPQSIKRVLLIADLQEVTICAGQRLCCGEAQCLAWDPSGEYLAVIFKGQSFVLLCKLHISRFDTRKSPPVELSYCGM 395 (445)
T ss_pred cccCcccceeeeeeccchhhhhhcCcccccCccceeeECCCCCEEEEEEcCCchhhhhhhhhhhhcccccCceEEEeccc
Confidence 111 22222223333433211110 111247889999999999999986644 3566776543332221 111
Q ss_pred --CCCeeeEEECC---CCCEEEEEeCCCeEEEEEcC
Q 003579 557 --TDRITDFCFSE---DGKWLLSSGMDGSLRIWDVI 587 (809)
Q Consensus 557 --~~~I~~l~fsp---dg~~l~s~s~D~~I~vwd~~ 587 (809)
...-..++|+| +|++|..+=.-|.+.-|++.
T Consensus 396 i~ge~P~~IsF~pl~n~g~lLsiaWsTGriq~ypl~ 431 (445)
T KOG2139|consen 396 IGGEYPAYISFGPLKNEGRLLSIAWSTGRIQRYPLT 431 (445)
T ss_pred ccCCCCceEEeeecccCCcEEEEEeccCceEeeeeE
Confidence 11244566766 56777777677777777654
No 205
>KOG2111 consensus Uncharacterized conserved protein, contains WD40 repeats [Function unknown]
Probab=99.72 E-value=1.8e-14 Score=136.17 Aligned_cols=229 Identities=15% Similarity=0.277 Sum_probs=166.8
Q ss_pred EcCCeEEEEEEcCCeEEEEEcCccEEEEecCCCC--CCcEEEEEeCCeEEEEECCe--------EEEEECCee--EEEEc
Q 003579 23 RLGTENFVTVSVGKAFHIYNCAKLNLVLVGPQLP--KKIRALASYRDYTFAAYGNH--------IAVVKRAHQ--VATWS 90 (809)
Q Consensus 23 ~~~~~~~i~~~~~~~i~iwd~~~~~~~~~~~~~~--~~I~~la~~~~~~~~a~g~~--------i~vw~~~~~--~~~~~ 90 (809)
...+..-.++..+.-++||+++-.+.......+. -.+.-|-+--+...+..|+. +.|||.-++ +.++
T Consensus 13 ~NQD~ScFava~~~Gfriyn~~P~ke~~~r~~~~~G~~~veMLfR~N~laLVGGg~~pky~pNkviIWDD~k~~~i~el- 91 (346)
T KOG2111|consen 13 FNQDHSCFAVATDTGFRIYNCDPFKESASRQFIDGGFKIVEMLFRSNYLALVGGGSRPKYPPNKVIIWDDLKERCIIEL- 91 (346)
T ss_pred EccCCceEEEEecCceEEEecCchhhhhhhccccCchhhhhHhhhhceEEEecCCCCCCCCCceEEEEecccCcEEEEE-
Confidence 3345555666677889999998754433322222 33444444444444444433 999995443 3333
Q ss_pred cccccEEEEEEeCCEEEEEeCCCcEEEEEcCCCccccceeeeEEcCCccccEEEEeCCCCCCEEEE-EeCCCeEEEEeCC
Q 003579 91 RHSAKVNLLLLFGEHILSIDIDGNMFIWAFKGIEENLAPVGHVKLDDKFTPTCIMHPDTYLNKVIV-GSQEGSLQLWNIS 169 (809)
Q Consensus 91 ~h~~~V~~l~~~g~~l~s~~~dg~i~vWd~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~l~~-~~~dg~i~lwd~~ 169 (809)
.-..+|.+|....++|+.+- ++.|.||...+.-.. +..+.......-.|++.|......|+. |-.-|.|+|-|+.
T Consensus 92 ~f~~~I~~V~l~r~riVvvl-~~~I~VytF~~n~k~---l~~~et~~NPkGlC~~~~~~~k~~LafPg~k~GqvQi~dL~ 167 (346)
T KOG2111|consen 92 SFNSEIKAVKLRRDRIVVVL-ENKIYVYTFPDNPKL---LHVIETRSNPKGLCSLCPTSNKSLLAFPGFKTGQVQIVDLA 167 (346)
T ss_pred EeccceeeEEEcCCeEEEEe-cCeEEEEEcCCChhh---eeeeecccCCCceEeecCCCCceEEEcCCCccceEEEEEhh
Confidence 35678999999999999997 889999999854332 334433333333666767663233443 4566999999997
Q ss_pred CCce--EEEEcCCCCCEEEEEEcCCCCEEEEEeCCCe-EEEEEeeCCeEEEEEeccC-CCcEEEEEEecCCCCEEEEEcC
Q 003579 170 TKKK--LYEFKGWGSSISSCVSSPALDVVAVGCSDGK-IHVHNVRYDEELVTFTHSM-RGAVTALAFSSDGQPLLASGAS 245 (809)
Q Consensus 170 ~~~~--~~~~~~~~~~I~~l~~sp~~~~la~g~~dg~-i~iwd~~~~~~~~~~~~~~-~~~V~~l~fs~dg~~~lasg~~ 245 (809)
..+. ...++.|.+.|.|++.+-+|.+||+++..|+ |||||..+|+.+.++..+. ...|.+|+|||++. +||+++.
T Consensus 168 ~~~~~~p~~I~AH~s~Iacv~Ln~~Gt~vATaStkGTLIRIFdt~~g~~l~E~RRG~d~A~iy~iaFSp~~s-~LavsSd 246 (346)
T KOG2111|consen 168 STKPNAPSIINAHDSDIACVALNLQGTLVATASTKGTLIRIFDTEDGTLLQELRRGVDRADIYCIAFSPNSS-WLAVSSD 246 (346)
T ss_pred hcCcCCceEEEcccCceeEEEEcCCccEEEEeccCcEEEEEEEcCCCcEeeeeecCCchheEEEEEeCCCcc-EEEEEcC
Confidence 6655 5778999999999999999999999999987 7999999999999998653 35899999999999 9999999
Q ss_pred CCcEEEEECCCc
Q 003579 246 SGVISIWNLEKR 257 (809)
Q Consensus 246 dg~I~iwdl~~~ 257 (809)
.|+|.|+.++..
T Consensus 247 KgTlHiF~l~~~ 258 (346)
T KOG2111|consen 247 KGTLHIFSLRDT 258 (346)
T ss_pred CCeEEEEEeecC
Confidence 999999998764
No 206
>KOG1240 consensus Protein kinase containing WD40 repeats [Signal transduction mechanisms]
Probab=99.72 E-value=1.2e-15 Score=167.37 Aligned_cols=302 Identities=20% Similarity=0.256 Sum_probs=211.6
Q ss_pred EEeeCCeEEEEEeccCCCcEEEEEEecCCCCEEEEEcCCCcEEEEECCCce-------eeeeeecccccceEEEEEecCC
Q 003579 208 HNVRYDEELVTFTHSMRGAVTALAFSSDGQPLLASGASSGVISIWNLEKRR-------LQSVIREAHDNAIISLHFFANE 280 (809)
Q Consensus 208 wd~~~~~~~~~~~~~~~~~V~~l~fs~dg~~~lasg~~dg~I~iwdl~~~~-------~~~~~~~~h~~~V~~l~~~~~~ 280 (809)
|+.+ |..+..+..| ...|..++.+++...++++|+.||+|++||+..-. ...+.. ...+.+.++...+++
T Consensus 1034 W~p~-G~lVAhL~Eh-s~~v~k~a~s~~~~s~FvsgS~DGtVKvW~~~k~~~~~~s~rS~ltys-~~~sr~~~vt~~~~~ 1110 (1431)
T KOG1240|consen 1034 WNPR-GILVAHLHEH-SSAVIKLAVSSEHTSLFVSGSDDGTVKVWNLRKLEGEGGSARSELTYS-PEGSRVEKVTMCGNG 1110 (1431)
T ss_pred CCcc-ceEeehhhhc-cccccceeecCCCCceEEEecCCceEEEeeehhhhcCcceeeeeEEEe-ccCCceEEEEeccCC
Confidence 6654 7777777766 67788888887764599999999999999986431 112222 246789999999999
Q ss_pred CEEEEEcCCCcEEEEEeeCCCCCc---eeEEeccCCCC-CCee-EEEec-CCC-EEEEEECCCCEEEEEeeecccceecc
Q 003579 281 PVLMSASADNSIKMWIFDTTDGDP---RLLRFRSGHSA-PPLC-IRFYA-NGR-HILSAGQDRAFRLFSVIQDQQSRELS 353 (809)
Q Consensus 281 ~~l~s~s~d~~i~vw~~~~~~~~~---~~~~~~~~h~~-~v~~-i~~~~-~~~-~l~s~~~dg~i~~wd~~~~~~~~~~~ 353 (809)
..+|.++.||.|++.+++...... ...+....+.. .+.+ -+|.. .+. .++.+..-+.+..||++.......+.
T Consensus 1111 ~~~Av~t~DG~v~~~~id~~~~~~~~~~~~ri~n~~~~g~vv~m~a~~~~~~S~~lvy~T~~~~iv~~D~r~~~~~w~lk 1190 (1431)
T KOG1240|consen 1111 DQFAVSTKDGSVRVLRIDHYNVSKRVATQVRIPNLKKDGVVVSMHAFTAIVQSHVLVYATDLSRIVSWDTRMRHDAWRLK 1190 (1431)
T ss_pred CeEEEEcCCCeEEEEEccccccccceeeeeecccccCCCceEEeecccccccceeEEEEEeccceEEecchhhhhHHhhh
Confidence 999999999999999988742221 12222223322 2222 23332 333 67788888899999987654332221
Q ss_pred hhhHHHHHhhccchhhhhccCceeEEeeccccccccceeEEeecCCceEEEEEeeeeeecceeeecCCCCCCCeEEEEEc
Q 003579 354 QRHVAKRARKLKMKEEELKLKPVIAFDCAEIRERDWCNVVTCHMDTAQAYVWRLQNFVLGEHILRPCPENPTAVKACTIS 433 (809)
Q Consensus 354 ~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~v~~v~~s 433 (809)
. ....+.|++++++
T Consensus 1191 ~------------------------------------------------------------------~~~hG~vTSi~id 1204 (1431)
T KOG1240|consen 1191 N------------------------------------------------------------------QLRHGLVTSIVID 1204 (1431)
T ss_pred c------------------------------------------------------------------CccccceeEEEec
Confidence 1 0123889999999
Q ss_pred CCCCEEEEEeCCCcEEEEECCCCceeeeeeCcccccccCccccEEEEEEcCCC---CEEEEEe--CcCeEEEEECCCCce
Q 003579 434 ACGNFAVLGTAGGWIERFNLQSGISRGSYLDMSERSNYAHNGEVVGVACDSTN---TLMISAG--YHGDIKVWDFKGRDL 508 (809)
Q Consensus 434 ~~g~~l~~g~~~g~i~i~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~---~~l~s~~--~dg~i~iwd~~~~~~ 508 (809)
|.++++++|++.|.+.+||++-+....... .++..+++.+..+|-. ...++++ ..+.|.+|++.+|..
T Consensus 1205 p~~~WlviGts~G~l~lWDLRF~~~i~sw~-------~P~~~~i~~v~~~~~~~~~S~~vs~~~~~~nevs~wn~~~g~~ 1277 (1431)
T KOG1240|consen 1205 PWCNWLVIGTSRGQLVLWDLRFRVPILSWE-------HPARAPIRHVWLCPTYPQESVSVSAGSSSNNEVSTWNMETGLR 1277 (1431)
T ss_pred CCceEEEEecCCceEEEEEeecCceeeccc-------CcccCCcceEEeeccCCCCceEEEecccCCCceeeeecccCcc
Confidence 999999999999999999999988888775 3566888888887743 4555554 467899999999866
Q ss_pred eeeeecC---------C-----------CeEEEEEeeCCCEEEEEeCCCeEEEEEcCCCeEE------------------
Q 003579 509 KSRWEVG---------C-----------SLVKIVYHRVNGLLATVADDLVIRLFDVVALRMV------------------ 550 (809)
Q Consensus 509 ~~~~~~~---------~-----------~i~~~~~s~~~~~la~~~~d~~I~v~d~~~~~~~------------------ 550 (809)
...+-.. . .....++...+..+.+|+.|..||.||....+..
T Consensus 1278 ~~vl~~s~~~p~ls~~~Ps~~~~kp~~~~~~~~~~~~~~~~~ltggsd~kIR~wD~~~p~~ss~~~~~~s~~~~~~~~s~ 1357 (1431)
T KOG1240|consen 1278 QTVLWASDGAPILSYALPSNDARKPDSLAGISCGVCEKNGFLLTGGSDMKIRKWDPTRPEISSYAVPGPSTSYSTNSESY 1357 (1431)
T ss_pred eEEEEcCCCCcchhhhcccccCCCCCcccceeeecccCCceeeecCCccceeeccCCCcccccccccCccccccccchhc
Confidence 6555322 0 1122333444678999999999999997542211
Q ss_pred -----------EE---------------------------EecCCCCeeeEEECCC-CCEEEEEeCCCeEEEEE
Q 003579 551 -----------RK---------------------------FEGHTDRITDFCFSED-GKWLLSSGMDGSLRIWD 585 (809)
Q Consensus 551 -----------~~---------------------------~~~h~~~I~~l~fspd-g~~l~s~s~D~~I~vwd 585 (809)
.. -..|..+|+++++... -.+|++++.||.|+||.
T Consensus 1358 ~~~~i~~~~~i~e~i~~~~tv~~t~~~~~~~~~~~~~~~ps~~H~d~Itdma~~~~~q~llvs~s~dG~IkiWk 1431 (1431)
T KOG1240|consen 1358 DLSTIPGSQFIDEFIIYQQTVGLTEALRENQKLRPGPSDPSTYHHDPITDMATLKSEQPLLVSSSRDGVIKIWK 1431 (1431)
T ss_pred cccccCCCccchhhhhhhhhcCchhhcccccccccCCCCCcccccchhhhhhhhccCccEEEEecCCCeeeecC
Confidence 00 0137788999988664 35889999999999993
No 207
>KOG1240 consensus Protein kinase containing WD40 repeats [Signal transduction mechanisms]
Probab=99.72 E-value=1.3e-15 Score=167.30 Aligned_cols=266 Identities=17% Similarity=0.201 Sum_probs=183.7
Q ss_pred EE-CCeeEEEEccccccEEEEEE---eCCEEEEEeCCCcEEEEEcCCCccccc---eeeeEEcCCccccEEEEeCCCCCC
Q 003579 80 VK-RAHQVATWSRHSAKVNLLLL---FGEHILSIDIDGNMFIWAFKGIEENLA---PVGHVKLDDKFTPTCIMHPDTYLN 152 (809)
Q Consensus 80 w~-~~~~~~~~~~h~~~V~~l~~---~g~~l~s~~~dg~i~vWd~~~~~~~~~---~~~~~~~~~~~~~~~~~~p~~~~~ 152 (809)
|+ +|..++++..|+..|..++. ++.+++|||.||+|++||...-..... ...++.........+.+-+.+ +
T Consensus 1034 W~p~G~lVAhL~Ehs~~v~k~a~s~~~~s~FvsgS~DGtVKvW~~~k~~~~~~s~rS~ltys~~~sr~~~vt~~~~~--~ 1111 (1431)
T KOG1240|consen 1034 WNPRGILVAHLHEHSSAVIKLAVSSEHTSLFVSGSDDGTVKVWNLRKLEGEGGSARSELTYSPEGSRVEKVTMCGNG--D 1111 (1431)
T ss_pred CCccceEeehhhhccccccceeecCCCCceEEEecCCceEEEeeehhhhcCcceeeeeEEEeccCCceEEEEeccCC--C
Confidence 55 46778889999999998886 468999999999999999876544311 122233233333444455666 7
Q ss_pred EEEEEeCCCeEEEEeCCCC--c-----eEEEEcCC-CCCEEEE-EEcC-CCC-EEEEEeCCCeEEEEEeeCCeEEEEEec
Q 003579 153 KVIVGSQEGSLQLWNISTK--K-----KLYEFKGW-GSSISSC-VSSP-ALD-VVAVGCSDGKIHVHNVRYDEELVTFTH 221 (809)
Q Consensus 153 ~l~~~~~dg~i~lwd~~~~--~-----~~~~~~~~-~~~I~~l-~~sp-~~~-~la~g~~dg~i~iwd~~~~~~~~~~~~ 221 (809)
.+|+++.||.|++.++.-. + ..+....+ .+.+..| +|.. ++. .|+.+...+.|..||+++...+.+++.
T Consensus 1112 ~~Av~t~DG~v~~~~id~~~~~~~~~~~~ri~n~~~~g~vv~m~a~~~~~~S~~lvy~T~~~~iv~~D~r~~~~~w~lk~ 1191 (1431)
T KOG1240|consen 1112 QFAVSTKDGSVRVLRIDHYNVSKRVATQVRIPNLKKDGVVVSMHAFTAIVQSHVLVYATDLSRIVSWDTRMRHDAWRLKN 1191 (1431)
T ss_pred eEEEEcCCCeEEEEEccccccccceeeeeecccccCCCceEEeecccccccceeEEEEEeccceEEecchhhhhHHhhhc
Confidence 8999999999999988652 1 11112222 2334443 4433 233 788888899999999998776655553
Q ss_pred c-CCCcEEEEEEecCCCCEEEEEcCCCcEEEEECCCceeeeeeecccccceEEEEEecCC---CEEEEEc--CCCcEEEE
Q 003579 222 S-MRGAVTALAFSSDGQPLLASGASSGVISIWNLEKRRLQSVIREAHDNAIISLHFFANE---PVLMSAS--ADNSIKMW 295 (809)
Q Consensus 222 ~-~~~~V~~l~fs~dg~~~lasg~~dg~I~iwdl~~~~~~~~~~~~h~~~V~~l~~~~~~---~~l~s~s--~d~~i~vw 295 (809)
. ..|.|++++.+|.+. .+++|+..|.+.+||++=+.++......+..++..+..+|-. ...++++ ..+.|.+|
T Consensus 1192 ~~~hG~vTSi~idp~~~-WlviGts~G~l~lWDLRF~~~i~sw~~P~~~~i~~v~~~~~~~~~S~~vs~~~~~~nevs~w 1270 (1431)
T KOG1240|consen 1192 QLRHGLVTSIVIDPWCN-WLVIGTSRGQLVLWDLRFRVPILSWEHPARAPIRHVWLCPTYPQESVSVSAGSSSNNEVSTW 1270 (1431)
T ss_pred CccccceeEEEecCCce-EEEEecCCceEEEEEeecCceeecccCcccCCcceEEeeccCCCCceEEEecccCCCceeee
Confidence 2 247899999999999 999999999999999999998888887777888888877643 3444444 47899999
Q ss_pred EeeCCCCCceeEEe---------c------cCCCCCCeeEEEecCCCEEEEEECCCCEEEEEeeeccc
Q 003579 296 IFDTTDGDPRLLRF---------R------SGHSAPPLCIRFYANGRHILSAGQDRAFRLFSVIQDQQ 348 (809)
Q Consensus 296 ~~~~~~~~~~~~~~---------~------~~h~~~v~~i~~~~~~~~l~s~~~dg~i~~wd~~~~~~ 348 (809)
++..+.+...+... . ..+.-......+...+..+++|+.|..|+.||......
T Consensus 1271 n~~~g~~~~vl~~s~~~p~ls~~~Ps~~~~kp~~~~~~~~~~~~~~~~~ltggsd~kIR~wD~~~p~~ 1338 (1431)
T KOG1240|consen 1271 NMETGLRQTVLWASDGAPILSYALPSNDARKPDSLAGISCGVCEKNGFLLTGGSDMKIRKWDPTRPEI 1338 (1431)
T ss_pred ecccCcceEEEEcCCCCcchhhhcccccCCCCCcccceeeecccCCceeeecCCccceeeccCCCccc
Confidence 98876432221111 0 01111222333444566899999999999999866543
No 208
>KOG0771 consensus Prolactin regulatory element-binding protein/Protein transport protein SEC12p [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.72 E-value=2.7e-15 Score=147.39 Aligned_cols=192 Identities=21% Similarity=0.267 Sum_probs=154.0
Q ss_pred EEEEEcCCCCEEEEEeCCCcEEEEECCCCceeeeeeCcccccccCccccEEEEEEcCCCCEEEEEeCcCeEEEEECCCCc
Q 003579 428 KACTISACGNFAVLGTAGGWIERFNLQSGISRGSYLDMSERSNYAHNGEVVGVACDSTNTLMISAGYHGDIKVWDFKGRD 507 (809)
Q Consensus 428 ~~v~~s~~g~~l~~g~~~g~i~i~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~l~s~~~dg~i~iwd~~~~~ 507 (809)
.+++++.+|..+++|..||.+++|+..+........ .|.+.|.++.|+||+++|++.+.| ..+||+..++.
T Consensus 148 k~vaf~~~gs~latgg~dg~lRv~~~Ps~~t~l~e~--------~~~~eV~DL~FS~dgk~lasig~d-~~~VW~~~~g~ 218 (398)
T KOG0771|consen 148 KVVAFNGDGSKLATGGTDGTLRVWEWPSMLTILEEI--------AHHAEVKDLDFSPDGKFLASIGAD-SARVWSVNTGA 218 (398)
T ss_pred eEEEEcCCCCEeeeccccceEEEEecCcchhhhhhH--------hhcCccccceeCCCCcEEEEecCC-ceEEEEeccCc
Confidence 789999999999999999999999988777666554 899999999999999999999999 99999999997
Q ss_pred eeeeeec---CCCeEEEEEeeCC-----CEEEEEeCCCeEEEEEcCCCeE-----EEEEecCCCCeeeEEECCCCCEEEE
Q 003579 508 LKSRWEV---GCSLVKIVYHRVN-----GLLATVADDLVIRLFDVVALRM-----VRKFEGHTDRITDFCFSEDGKWLLS 574 (809)
Q Consensus 508 ~~~~~~~---~~~i~~~~~s~~~-----~~la~~~~d~~I~v~d~~~~~~-----~~~~~~h~~~I~~l~fspdg~~l~s 574 (809)
.+..... ......+.|+.|+ .+.+....-+.|+.||+..++- .++...-...|++++.|+||++++.
T Consensus 219 ~~a~~t~~~k~~~~~~cRF~~d~~~~~l~laa~~~~~~~v~~~~~~~w~~~~~l~~~~~~~~~~siSsl~VS~dGkf~Al 298 (398)
T KOG0771|consen 219 ALARKTPFSKDEMFSSCRFSVDNAQETLRLAASQFPGGGVRLCDISLWSGSNFLRLRKKIKRFKSISSLAVSDDGKFLAL 298 (398)
T ss_pred hhhhcCCcccchhhhhceecccCCCceEEEEEecCCCCceeEEEeeeeccccccchhhhhhccCcceeEEEcCCCcEEEE
Confidence 6666542 2566778888887 3333444567788877654322 1122223357999999999999999
Q ss_pred EeCCCeEEEEEcCCccEEEEeee-Cc-ceEEEEEcCCCCeEEEEEeCCCeEEEeecC
Q 003579 575 SGMDGSLRIWDVILARQIDAIHV-DV-SITALSLSPNMDVLATAHVDQNGVYLWVNR 629 (809)
Q Consensus 575 ~s~D~~I~vwd~~~~~~i~~~~~-~~-~v~~l~~spdg~~lat~~~d~~~i~lW~~~ 629 (809)
|+.||.|.|++..+-+.+..++. |. -|+.+.|+||.+++++.+.+. ...|-.+.
T Consensus 299 GT~dGsVai~~~~~lq~~~~vk~aH~~~VT~ltF~Pdsr~~~svSs~~-~~~v~~l~ 354 (398)
T KOG0771|consen 299 GTMDGSVAIYDAKSLQRLQYVKEAHLGFVTGLTFSPDSRYLASVSSDN-EAAVTKLA 354 (398)
T ss_pred eccCCcEEEEEeceeeeeEeehhhheeeeeeEEEcCCcCcccccccCC-ceeEEEEe
Confidence 99999999999998888877652 33 499999999999999988877 47766654
No 209
>KOG4227 consensus WD40 repeat protein [General function prediction only]
Probab=99.71 E-value=1.7e-15 Score=146.09 Aligned_cols=303 Identities=14% Similarity=0.148 Sum_probs=218.3
Q ss_pred EEcCCccccEEEEeCCCCCCEEEEEeCCCeEEEEeCC------CCceEEEEc-CCCCCEEEEEEcCCCCEEEEEeCCCeE
Q 003579 133 VKLDDKFTPTCIMHPDTYLNKVIVGSQEGSLQLWNIS------TKKKLYEFK-GWGSSISSCVSSPALDVVAVGCSDGKI 205 (809)
Q Consensus 133 ~~~~~~~~~~~~~~p~~~~~~l~~~~~dg~i~lwd~~------~~~~~~~~~-~~~~~I~~l~~sp~~~~la~g~~dg~i 205 (809)
+..|.+++...-|+.++ ..|++|+.|..+++|++. +.|++.... .|.+.|.|++|......|.+|..+++|
T Consensus 52 ~~~H~GCiNAlqFS~N~--~~L~SGGDD~~~~~W~~de~~~~k~~KPI~~~~~~H~SNIF~L~F~~~N~~~~SG~~~~~V 129 (609)
T KOG4227|consen 52 VREHTGCINALQFSHND--RFLASGGDDMHGRVWNVDELMVRKTPKPIGVMEHPHRSNIFSLEFDLENRFLYSGERWGTV 129 (609)
T ss_pred hhhhccccceeeeccCC--eEEeecCCcceeeeechHHHHhhcCCCCceeccCccccceEEEEEccCCeeEecCCCccee
Confidence 34466777777898888 899999999999999985 456666554 456899999999999999999999999
Q ss_pred EEEEeeCCeEEEEEecc-CCCcEEEEEEecCCCCEEEEEcCCCcEEEEECCCce-eeeee-ecccccceEEEEEecCCC-
Q 003579 206 HVHNVRYDEELVTFTHS-MRGAVTALAFSSDGQPLLASGASSGVISIWNLEKRR-LQSVI-REAHDNAIISLHFFANEP- 281 (809)
Q Consensus 206 ~iwd~~~~~~~~~~~~~-~~~~V~~l~fs~dg~~~lasg~~dg~I~iwdl~~~~-~~~~~-~~~h~~~V~~l~~~~~~~- 281 (809)
.++|+++.+.+..+... ..+.|+.+..+|... ++++.+.+|.|.+||.+... ....+ ..........+.|.|..+
T Consensus 130 I~HDiEt~qsi~V~~~~~~~~~VY~m~~~P~DN-~~~~~t~~~~V~~~D~Rd~~~~~~~~~~AN~~~~F~t~~F~P~~P~ 208 (609)
T KOG4227|consen 130 IKHDIETKQSIYVANENNNRGDVYHMDQHPTDN-TLIVVTRAKLVSFIDNRDRQNPISLVLPANSGKNFYTAEFHPETPA 208 (609)
T ss_pred EeeecccceeeeeecccCcccceeecccCCCCc-eEEEEecCceEEEEeccCCCCCCceeeecCCCccceeeeecCCCce
Confidence 99999999999888753 246899999999877 89999999999999998765 22222 112345678899999876
Q ss_pred EEEEEcCCCcEEEEEeeCCCCCceeEEeccCC------CCCCeeEEEecCCCEEEEEECCCCEEEEEeeecccceecchh
Q 003579 282 VLMSASADNSIKMWIFDTTDGDPRLLRFRSGH------SAPPLCIRFYANGRHILSAGQDRAFRLFSVIQDQQSRELSQR 355 (809)
Q Consensus 282 ~l~s~s~d~~i~vw~~~~~~~~~~~~~~~~~h------~~~v~~i~~~~~~~~l~s~~~dg~i~~wd~~~~~~~~~~~~~ 355 (809)
+|++++..+-+.+||...... .+..+.+. ...-.++.|+|+|..+++--....-.+||+....+..-
T Consensus 209 Li~~~~~~~G~~~~D~R~~~~---~~~~~~~~~~L~~~~~~~M~~~~~~~G~Q~msiRR~~~P~~~D~~S~R~~V~---- 281 (609)
T KOG4227|consen 209 LILVNSETGGPNVFDRRMQAR---PVYQRSMFKGLPQENTEWMGSLWSPSGNQFMSIRRGKCPLYFDFISQRCFVL---- 281 (609)
T ss_pred eEEeccccCCCCceeeccccc---hHHhhhccccCcccchhhhheeeCCCCCeehhhhccCCCEEeeeecccceeE----
Confidence 667778888899999876542 22111111 22236788999999998877666667777765332110
Q ss_pred hHHHHHhhccchhhhhccCceeEEeeccccccccceeEEeecCCceEEEEEeeeeeecceeeecCCCCCCCeEEEEEcCC
Q 003579 356 HVAKRARKLKMKEEELKLKPVIAFDCAEIRERDWCNVVTCHMDTAQAYVWRLQNFVLGEHILRPCPENPTAVKACTISAC 435 (809)
Q Consensus 356 ~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~v~~v~~s~~ 435 (809)
.++.. ..+. -+...+.+++|-.+
T Consensus 282 ----------------------k~D~N---------------~~GY--------------------~N~~T~KS~~F~~D 304 (609)
T KOG4227|consen 282 ----------------------KSDHN---------------PNGY--------------------CNIKTIKSMTFIDD 304 (609)
T ss_pred ----------------------eccCC---------------CCcc--------------------eeeeeeeeeeeecc
Confidence 00000 0000 01135666777655
Q ss_pred CCEEEEEeCCCcEEEEECCCCceeee---------------eeCcccccccCccccEEEEEEcCCCCEEEEEeCcCeEEE
Q 003579 436 GNFAVLGTAGGWIERFNLQSGISRGS---------------YLDMSERSNYAHNGEVVGVACDSTNTLMISAGYHGDIKV 500 (809)
Q Consensus 436 g~~l~~g~~~g~i~i~~~~~~~~~~~---------------~~~~~~~~~~~h~~~v~~l~~~~~~~~l~s~~~dg~i~i 500 (809)
-. +++|+.+-.|++|.+.......- +.......+.+|..-+..+.|+|.+.+|++.+-...+++
T Consensus 305 ~~-v~tGSD~~~i~~WklP~~~ds~G~~~IG~~~~~~~~~~~i~~~~~VLrGHRSv~NQVRF~~H~~~l~SSGVE~~~Kl 383 (609)
T KOG4227|consen 305 YT-VATGSDHWGIHIWKLPRANDSYGFTQIGHDEEEMPSEIFIEKELTVLRGHRSVPNQVRFSQHNNLLVSSGVENSFKL 383 (609)
T ss_pred ee-eeccCcccceEEEecCCCccccCccccCcchhhCchhheecceeEEEecccccccceeecCCcceEeccchhhheec
Confidence 44 88888888999998754322211 112222345799999999999999999999999999999
Q ss_pred EEC
Q 003579 501 WDF 503 (809)
Q Consensus 501 wd~ 503 (809)
|.-
T Consensus 384 WS~ 386 (609)
T KOG4227|consen 384 WSD 386 (609)
T ss_pred ccc
Confidence 974
No 210
>KOG1524 consensus WD40 repeat-containing protein CHE-2 [General function prediction only]
Probab=99.71 E-value=1.7e-15 Score=151.93 Aligned_cols=263 Identities=19% Similarity=0.246 Sum_probs=186.9
Q ss_pred CCcEEEEEEecCCCCEEEEEcCCCcEEEEECCCceeeeeeecccccceEEEEEec-------CCCEEEEEcCCCcEEEEE
Q 003579 224 RGAVTALAFSSDGQPLLASGASSGVISIWNLEKRRLQSVIREAHDNAIISLHFFA-------NEPVLMSASADNSIKMWI 296 (809)
Q Consensus 224 ~~~V~~l~fs~dg~~~lasg~~dg~I~iwdl~~~~~~~~~~~~h~~~V~~l~~~~-------~~~~l~s~s~d~~i~vw~ 296 (809)
...+.|+.|+.+.. ++.+++ |..+.+|.-.+......+....+.-.+.+..-+ +...++.++.||.+.+.+
T Consensus 14 ~e~vc~v~w~~~ee-i~~~~d-Dh~~~~~~~~~~~s~~~~~~p~df~pt~~h~~~rs~~~g~~~d~~~i~s~DGkf~il~ 91 (737)
T KOG1524|consen 14 SEKVCCVDWSSNEE-IYFVSD-DHQIFKWSDVSRDSVEVAKLPDDFVPTDMHLGGRSSGGGKGSDTLLICSNDGRFVILN 91 (737)
T ss_pred ceeEEeecccccce-EEEecc-CceEEEeecccchhhhhhhCCcccCCccccccccccCCCCCcceEEEEcCCceEEEec
Confidence 55678999998877 565555 555555543333222222211111111111111 223788888899888773
Q ss_pred eeCCCCCceeEEeccCCCCCCeeEEEecCCCEEEEEECCCCEEEEEeeecccceecchhhHHHHHhhccchhhhhccCce
Q 003579 297 FDTTDGDPRLLRFRSGHSAPPLCIRFYANGRHILSAGQDRAFRLFSVIQDQQSRELSQRHVAKRARKLKMKEEELKLKPV 376 (809)
Q Consensus 297 ~~~~~~~~~~~~~~~~h~~~v~~i~~~~~~~~l~s~~~dg~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i 376 (809)
- ..+..+....|.+.+.+-+|+|||.-|+++|.||.|++|+-...- ...+
T Consensus 92 k-----~~rVE~sv~AH~~A~~~gRW~~dGtgLlt~GEDG~iKiWSrsGML-RStl------------------------ 141 (737)
T KOG1524|consen 92 K-----SARVERSISAHAAAISSGRWSPDGAGLLTAGEDGVIKIWSRSGML-RSTV------------------------ 141 (737)
T ss_pred c-----cchhhhhhhhhhhhhhhcccCCCCceeeeecCCceEEEEeccchH-HHHH------------------------
Confidence 2 226677788999999999999999999999999999999842211 0000
Q ss_pred eEEeeccccccccceeEEeecCCceEEEEEeeeeeecceeeecCCCCCCCeEEEEEcCCCCEEEEEeCCCcEEEEECCCC
Q 003579 377 IAFDCAEIRERDWCNVVTCHMDTAQAYVWRLQNFVLGEHILRPCPENPTAVKACTISACGNFAVLGTAGGWIERFNLQSG 456 (809)
Q Consensus 377 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~v~~v~~s~~g~~l~~g~~~g~i~i~~~~~~ 456 (809)
......|.|++|.|+.+.++.+ ..|++.+=.++..
T Consensus 142 --------------------------------------------~Q~~~~v~c~~W~p~S~~vl~c-~g~h~~IKpL~~n 176 (737)
T KOG1524|consen 142 --------------------------------------------VQNEESIRCARWAPNSNSIVFC-QGGHISIKPLAAN 176 (737)
T ss_pred --------------------------------------------hhcCceeEEEEECCCCCceEEe-cCCeEEEeecccc
Confidence 1223789999999998877664 4566777777666
Q ss_pred ceeeeeeCcccccccCccccEEEEEEcCCCCEEEEEeCcCeEEEEECCCCceeeeeecCCCeEEEEEeeCCCEEEEEeCC
Q 003579 457 ISRGSYLDMSERSNYAHNGEVVGVACDSTNTLMISAGYHGDIKVWDFKGRDLKSRWEVGCSLVKIVYHRVNGLLATVADD 536 (809)
Q Consensus 457 ~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~i~~~~~s~~~~~la~~~~d 536 (809)
...-... +|.+-|.++.|++.+.++++||.|-..++||-....+...-.+..+|++++|.|+ ..+++++.+
T Consensus 177 ~k~i~Wk--------AHDGiiL~~~W~~~s~lI~sgGED~kfKvWD~~G~~Lf~S~~~ey~ITSva~npd-~~~~v~S~n 247 (737)
T KOG1524|consen 177 SKIIRWR--------AHDGLVLSLSWSTQSNIIASGGEDFRFKIWDAQGANLFTSAAEEYAITSVAFNPE-KDYLLWSYN 247 (737)
T ss_pred cceeEEe--------ccCcEEEEeecCccccceeecCCceeEEeecccCcccccCChhccceeeeeeccc-cceeeeeee
Confidence 6555554 9999999999999999999999999999999877777666677799999999999 666766542
Q ss_pred CeEEEEEcCCCeEEEEEecCCCCeeeEEECCCCCEEEEEeCCCeEEEE
Q 003579 537 LVIRLFDVVALRMVRKFEGHTDRITDFCFSEDGKWLLSSGMDGSLRIW 584 (809)
Q Consensus 537 ~~I~v~d~~~~~~~~~~~~h~~~I~~l~fspdg~~l~s~s~D~~I~vw 584 (809)
+.|+ -....+.|..++||+||..++.|...|.+.+=
T Consensus 248 -t~R~-----------~~p~~GSifnlsWS~DGTQ~a~gt~~G~v~~A 283 (737)
T KOG1524|consen 248 -TARF-----------SSPRVGSIFNLSWSADGTQATCGTSTGQLIVA 283 (737)
T ss_pred -eeee-----------cCCCccceEEEEEcCCCceeeccccCceEEEe
Confidence 3331 12345789999999999999999888877653
No 211
>KOG1587 consensus Cytoplasmic dynein intermediate chain [Cytoskeleton]
Probab=99.71 E-value=2.6e-15 Score=160.87 Aligned_cols=274 Identities=18% Similarity=0.199 Sum_probs=196.3
Q ss_pred CeEEEEEeeCC-eEEEEEeccCCCcEEEEEEecCCCCEEEEEcCCCcEEEEECCCcee-----eeeeecccccceEEEEE
Q 003579 203 GKIHVHNVRYD-EELVTFTHSMRGAVTALAFSSDGQPLLASGASSGVISIWNLEKRRL-----QSVIREAHDNAIISLHF 276 (809)
Q Consensus 203 g~i~iwd~~~~-~~~~~~~~~~~~~V~~l~fs~dg~~~lasg~~dg~I~iwdl~~~~~-----~~~~~~~h~~~V~~l~~ 276 (809)
+.+.+|+++.. .+-..+.. ...|+|+.|+|....+++.|..+|.|.+||++.+.. +......|..+++.+.|
T Consensus 222 ~~~~vW~~~~p~~Pe~~~~~--~s~v~~~~f~p~~p~ll~gG~y~GqV~lWD~~~~~~~~~s~ls~~~~sh~~~v~~vvW 299 (555)
T KOG1587|consen 222 GVLLVWSLKNPNTPELVLES--PSEVTCLKFCPFDPNLLAGGCYNGQVVLWDLRKGSDTPPSGLSALEVSHSEPVTAVVW 299 (555)
T ss_pred ceEEEEecCCCCCceEEEec--CCceeEEEeccCCcceEEeeccCceEEEEEccCCCCCCCcccccccccCCcCeEEEEE
Confidence 47999999876 33344433 688999999999888999999999999999988755 23333578999999999
Q ss_pred ecCCCE--EEEEcCCCcEEEEEeeCCCCCc--eeEEec------cCCCCCCeeEEEec-CCCEEEEEECCCCEEEEEeee
Q 003579 277 FANEPV--LMSASADNSIKMWIFDTTDGDP--RLLRFR------SGHSAPPLCIRFYA-NGRHILSAGQDRAFRLFSVIQ 345 (809)
Q Consensus 277 ~~~~~~--l~s~s~d~~i~vw~~~~~~~~~--~~~~~~------~~h~~~v~~i~~~~-~~~~l~s~~~dg~i~~wd~~~ 345 (809)
..+..- +++++.||.|..|+++.-.... .++... ..-...++++.|.+ +-..++.|+.+|.|..-+-..
T Consensus 300 ~~~~~~~~f~s~ssDG~i~~W~~~~l~~P~e~~~~~~~~~~~~~~~~~~~~t~~~F~~~~p~~FiVGTe~G~v~~~~r~g 379 (555)
T KOG1587|consen 300 LQNEHNTEFFSLSSDGSICSWDTDMLSLPVEGLLLESKKHKGQQSSKAVGATSLKFEPTDPNHFIVGTEEGKVYKGCRKG 379 (555)
T ss_pred eccCCCCceEEEecCCcEeeeeccccccchhhcccccccccccccccccceeeEeeccCCCceEEEEcCCcEEEEEeccC
Confidence 886655 9999999999999877543211 011111 12234688999998 667899999999876533211
Q ss_pred cccceecchhhHHHHHhhccchhhhhccCceeEEeeccccccccceeEEeecCCceEEEEEeeeeeecceeeecCCCCCC
Q 003579 346 DQQSRELSQRHVAKRARKLKMKEEELKLKPVIAFDCAEIRERDWCNVVTCHMDTAQAYVWRLQNFVLGEHILRPCPENPT 425 (809)
Q Consensus 346 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~ 425 (809)
.....+. ..........|.+
T Consensus 380 ~~~~~~~------------------------------------------------------------~~~~~~~~~~h~g 399 (555)
T KOG1587|consen 380 YTPAPEV------------------------------------------------------------SYKGHSTFITHIG 399 (555)
T ss_pred Ccccccc------------------------------------------------------------cccccccccccCc
Confidence 1110000 0011112234568
Q ss_pred CeEEEEEcCCCCEEEEEeCCCcEEEEECC-CCceeeeeeCcccccccCccccEEEEEEcCCC-CEEEEEeCcCeEEEEEC
Q 003579 426 AVKACTISACGNFAVLGTAGGWIERFNLQ-SGISRGSYLDMSERSNYAHNGEVVGVACDSTN-TLMISAGYHGDIKVWDF 503 (809)
Q Consensus 426 ~v~~v~~s~~g~~l~~g~~~g~i~i~~~~-~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~-~~l~s~~~dg~i~iwd~ 503 (809)
.|.++.++|=+..++..+.|.++++|... .......+. .+...|++++|+|.. ..++++..||.|.+||+
T Consensus 400 ~v~~v~~nPF~~k~fls~gDW~vriWs~~~~~~Pl~~~~--------~~~~~v~~vaWSptrpavF~~~d~~G~l~iWDL 471 (555)
T KOG1587|consen 400 PVYAVSRNPFYPKNFLSVGDWTVRIWSEDVIASPLLSLD--------SSPDYVTDVAWSPTRPAVFATVDGDGNLDIWDL 471 (555)
T ss_pred ceEeeecCCCccceeeeeccceeEeccccCCCCcchhhh--------hccceeeeeEEcCcCceEEEEEcCCCceehhhh
Confidence 99999999988766666669999999987 444444443 566779999999977 46677778999999999
Q ss_pred CCCce--eeeeec-CCCeEEEEEeeCCCEEEEEeCCCeEEEEEcCC
Q 003579 504 KGRDL--KSRWEV-GCSLVKIVYHRVNGLLATVADDLVIRLFDVVA 546 (809)
Q Consensus 504 ~~~~~--~~~~~~-~~~i~~~~~s~~~~~la~~~~d~~I~v~d~~~ 546 (809)
..... ..+... ....+.+.++++|+.|++|...|.+++|++..
T Consensus 472 l~~~~~Pv~s~~~~~~~l~~~~~s~~g~~lavGd~~G~~~~~~l~~ 517 (555)
T KOG1587|consen 472 LQDDEEPVLSQKVCSPALTRVRWSPNGKLLAVGDANGTTHILKLSE 517 (555)
T ss_pred hccccCCcccccccccccceeecCCCCcEEEEecCCCcEEEEEcCc
Confidence 75533 333322 35667788888899999999999999999853
No 212
>KOG1912 consensus WD40 repeat protein [General function prediction only]
Probab=99.70 E-value=9.8e-15 Score=152.84 Aligned_cols=423 Identities=14% Similarity=0.121 Sum_probs=271.6
Q ss_pred ccEEEEeCCCCCCEEEEEeCCCeEEEEeCCCCceEEEEcCCCCCEEEEEEcCCC------------CEEEEEeCCCeEEE
Q 003579 140 TPTCIMHPDTYLNKVIVGSQEGSLQLWNISTKKKLYEFKGWGSSISSCVSSPAL------------DVVAVGCSDGKIHV 207 (809)
Q Consensus 140 ~~~~~~~p~~~~~~l~~~~~dg~i~lwd~~~~~~~~~~~~~~~~I~~l~~sp~~------------~~la~g~~dg~i~i 207 (809)
....-++|.| .|+.| ....|.+.|..+.+.++.+.-|...|+.+.|.|.. -+||++.-.|.|.+
T Consensus 18 ~~A~Dw~~~G---LiAyg-shslV~VVDs~s~q~iqsie~h~s~V~~VrWap~~~p~~llS~~~~~lliAsaD~~GrIil 93 (1062)
T KOG1912|consen 18 RNAADWSPSG---LIAYG-SHSLVSVVDSRSLQLIQSIELHQSAVTSVRWAPAPSPRDLLSPSSSQLLIASADISGRIIL 93 (1062)
T ss_pred ccccccCccc---eEEEe-cCceEEEEehhhhhhhhccccCccceeEEEeccCCCchhccCccccceeEEeccccCcEEE
Confidence 3445588887 45555 45679999999999999999999999999998742 26788888899999
Q ss_pred EEeeCCeEEEEEeccCCCcEEEEEEec---CCCCEEEEEcCCCcEEEEECCCceeeeeeecccccceEEEEEec-CCCEE
Q 003579 208 HNVRYDEELVTFTHSMRGAVTALAFSS---DGQPLLASGASSGVISIWNLEKRRLQSVIREAHDNAIISLHFFA-NEPVL 283 (809)
Q Consensus 208 wd~~~~~~~~~~~~~~~~~V~~l~fs~---dg~~~lasg~~dg~I~iwdl~~~~~~~~~~~~h~~~V~~l~~~~-~~~~l 283 (809)
||...+..+..+.++ ..++..++|-+ +.+.+|++-.....|.+||..+|+...... .......++.+.| |.+.+
T Consensus 94 ~d~~~~s~~~~l~~~-~~~~qdl~W~~~rd~Srd~LlaIh~ss~lvLwntdtG~k~Wk~~-ys~~iLs~f~~DPfd~rh~ 171 (1062)
T KOG1912|consen 94 VDFVLASVINWLSHS-NDSVQDLCWVPARDDSRDVLLAIHGSSTLVLWNTDTGEKFWKYD-YSHEILSCFRVDPFDSRHF 171 (1062)
T ss_pred EEehhhhhhhhhcCC-CcchhheeeeeccCcchheeEEecCCcEEEEEEccCCceeeccc-cCCcceeeeeeCCCCcceE
Confidence 999999888888776 78899999876 444577777778899999999999988877 3344566688877 44455
Q ss_pred EEEcCCCcEEEEEeeCC---CCCceeEEeccCCCC----------------CC---------eeEEEecCCCEEEEEECC
Q 003579 284 MSASADNSIKMWIFDTT---DGDPRLLRFRSGHSA----------------PP---------LCIRFYANGRHILSAGQD 335 (809)
Q Consensus 284 ~s~s~d~~i~vw~~~~~---~~~~~~~~~~~~h~~----------------~v---------~~i~~~~~~~~l~s~~~d 335 (809)
...+..|.+-+-++-.. ....+..+....|+. .. ..++|+|.-+.++.....
T Consensus 172 ~~l~s~g~vl~~~~l~~sep~~pgk~~qI~sd~Sdl~~lere~at~ns~ts~~~sa~fity~a~faf~p~~rn~lfi~~p 251 (1062)
T KOG1912|consen 172 CVLGSKGFVLSCKDLGLSEPDVPGKEFQITSDHSDLAHLERETATGNSTTSTPASAYFITYCAQFAFSPHWRNILFITFP 251 (1062)
T ss_pred EEEccCceEEEEeccCCCCCCCCceeEEEecCccchhhhhhhhhccccccCCCcchhHHHHHHhhhcChhhhceEEEEec
Confidence 55555565555544221 111222222223322 11 124567766666666667
Q ss_pred CCEEEEEeeecccceecchhhHHHHHhhccchhhhhccCceeEEeeccccccccceeEEeecCCceEEEEEeeeeeec--
Q 003579 336 RAFRLFSVIQDQQSRELSQRHVAKRARKLKMKEEELKLKPVIAFDCAEIRERDWCNVVTCHMDTAQAYVWRLQNFVLG-- 413 (809)
Q Consensus 336 g~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~-- 413 (809)
+.+.++|++-........... ...++..+-.. .. ...+.|.-.++.+.+|.-+.....
T Consensus 252 rellv~dle~~~~l~vvpier---------------~~akfv~vlP~----~~-rd~LfclH~nG~ltirvrk~~~~~f~ 311 (1062)
T KOG1912|consen 252 RELLVFDLEYECCLAVVPIER---------------GGAKFVDVLPD----PR-RDALFCLHSNGRLTIRVRKEEPTEFK 311 (1062)
T ss_pred cceEEEcchhhceeEEEEecc---------------CCcceeEeccC----CC-cceEEEEecCCeEEEEEeeccCcccc
Confidence 789999987665544332110 00111111111 11 234455556677777765542111
Q ss_pred -------------ceeeecCCCCCCCeEEEEEcCC-CCEEEEEeCCCcEEEEECCCCceeeeeeCccc------------
Q 003579 414 -------------EHILRPCPENPTAVKACTISAC-GNFAVLGTAGGWIERFNLQSGISRGSYLDMSE------------ 467 (809)
Q Consensus 414 -------------~~~~~~~~~~~~~v~~v~~s~~-g~~l~~g~~~g~i~i~~~~~~~~~~~~~~~~~------------ 467 (809)
.+.+++... ..+......|. .+.+++-.++|.+.+|++.+|+..........
T Consensus 312 ~~~~~l~~dl~~Q~~~vr~m~~--~rp~~~~~cPs~~sa~avl~s~g~~~~w~l~~~ri~~~~~s~~iel~~pf~f~~~~ 389 (1062)
T KOG1912|consen 312 KPNASLSMDLGEQVHVVRPMEE--FRPVIGASCPSTPSALAVLYSSGDSTFWQLSNGRIHLDYRSSSIELVLPFDFNLST 389 (1062)
T ss_pred ccchhhccccccceEEEeechh--cccceeecCCCChhhhhhhhhcchhHHHhhhcCCcCcccccccccccccccccCce
Confidence 111111111 11222222333 55666677888899999887654332221000
Q ss_pred -----------ccccCccccEEEEEEcC-----------CC-------CEEEEEeCcCeEEEEECCCCceeeeeecC-CC
Q 003579 468 -----------RSNYAHNGEVVGVACDS-----------TN-------TLMISAGYHGDIKVWDFKGRDLKSRWEVG-CS 517 (809)
Q Consensus 468 -----------~~~~~h~~~v~~l~~~~-----------~~-------~~l~s~~~dg~i~iwd~~~~~~~~~~~~~-~~ 517 (809)
....+|....++....| .+ .+++.|...|+|.++|+.++..-+.+..+ +.
T Consensus 390 ~~v~k~~l~~LS~dg~h~sGs~~~~~~p~p~~t~~~~~p~~n~~~~~~pLvAvGT~sGTV~vvdvst~~v~~~fsvht~~ 469 (1062)
T KOG1912|consen 390 KLVGKTSLISLSDDGSHSSGSTCVRMRPMPELTKVENDPGGNTPAGTVPLVAVGTNSGTVDVVDVSTNAVAASFSVHTSL 469 (1062)
T ss_pred eehhhccccchhhcCCCCCCceeeecccCcccceeecCCCCCccceeeeeEEeecCCceEEEEEecchhhhhhhcccccc
Confidence 01235666555555443 22 26788899999999999999888777665 77
Q ss_pred eEEEEEeeCCCEEEEEeC---------CCeEEEEEcCCCeE--EEEEec-CCCCeeeEEECCCCCEEEEEeCCCeEEEEE
Q 003579 518 LVKIVYHRVNGLLATVAD---------DLVIRLFDVVALRM--VRKFEG-HTDRITDFCFSEDGKWLLSSGMDGSLRIWD 585 (809)
Q Consensus 518 i~~~~~s~~~~~la~~~~---------d~~I~v~d~~~~~~--~~~~~~-h~~~I~~l~fspdg~~l~s~s~D~~I~vwd 585 (809)
|.++.|-...+++-.+.. -+.+.+-|+++|.. .+.+++ ...+|..+..|..|+||+..-.|.-+-+||
T Consensus 470 VkgleW~g~sslvSfsys~~n~~sg~vrN~l~vtdLrtGlsk~fR~l~~~despI~~irvS~~~~yLai~Fr~~plEiwd 549 (1062)
T KOG1912|consen 470 VKGLEWLGNSSLVSFSYSHVNSASGGVRNDLVVTDLRTGLSKRFRGLQKPDESPIRAIRVSSSGRYLAILFRREPLEIWD 549 (1062)
T ss_pred eeeeeeccceeEEEeeeccccccccceeeeEEEEEcccccccccccCCCCCcCcceeeeecccCceEEEEecccchHHHh
Confidence 888888876666654433 24577889998843 333333 457899999999999999999999999999
Q ss_pred cCCcc
Q 003579 586 VILAR 590 (809)
Q Consensus 586 ~~~~~ 590 (809)
+++-.
T Consensus 550 ~kt~~ 554 (1062)
T KOG1912|consen 550 LKTLR 554 (1062)
T ss_pred hccch
Confidence 86544
No 213
>KOG1334 consensus WD40 repeat protein [General function prediction only]
Probab=99.70 E-value=1.2e-16 Score=158.81 Aligned_cols=318 Identities=14% Similarity=0.163 Sum_probs=236.3
Q ss_pred eEEEEcCCCCCEEEEEEcCCCCEEEEEeCCCeEEEEEeeCCeEEEEEeccCCCcEEEEEEecCC-CCEEEEEcCCCcEEE
Q 003579 173 KLYEFKGWGSSISSCVSSPALDVVAVGCSDGKIHVHNVRYDEELVTFTHSMRGAVTALAFSSDG-QPLLASGASSGVISI 251 (809)
Q Consensus 173 ~~~~~~~~~~~I~~l~~sp~~~~la~g~~dg~i~iwd~~~~~~~~~~~~~~~~~V~~l~fs~dg-~~~lasg~~dg~I~i 251 (809)
+...+..|.+.|..+.|...|+.|++|+.|..|.+||...++....+..+|...|....|.|.. ..-+++++.||.+++
T Consensus 134 l~~kL~~H~GcVntV~FN~~Gd~l~SgSDD~~vv~WdW~~~~~~l~f~SGH~~NvfQaKFiP~s~d~ti~~~s~dgqvr~ 213 (559)
T KOG1334|consen 134 LQKKLNKHKGCVNTVHFNQRGDVLASGSDDLQVVVWDWVSGSPKLSFESGHCNNVFQAKFIPFSGDRTIVTSSRDGQVRV 213 (559)
T ss_pred hhhcccCCCCccceeeecccCceeeccCccceEEeehhhccCcccccccccccchhhhhccCCCCCcCceeccccCceee
Confidence 4566889999999999999999999999999999999999999999999888888888888852 236888999999998
Q ss_pred EECCCc-eee-eeeecccccceEEEEEecCCC-EEEEEcCCCcEEEEEeeCCCCCceeEEeccCCCC---CCeeEEEec-
Q 003579 252 WNLEKR-RLQ-SVIREAHDNAIISLHFFANEP-VLMSASADNSIKMWIFDTTDGDPRLLRFRSGHSA---PPLCIRFYA- 324 (809)
Q Consensus 252 wdl~~~-~~~-~~~~~~h~~~V~~l~~~~~~~-~l~s~s~d~~i~vw~~~~~~~~~~~~~~~~~h~~---~v~~i~~~~- 324 (809)
=.+... .+. ......|.++|..++.-|+.+ -|.+++.|+.+.-.|+.......... ....+.. ....++..|
T Consensus 214 s~i~~t~~~e~t~rl~~h~g~vhklav~p~sp~~f~S~geD~~v~~~Dlr~~~pa~~~~-cr~~~~~~~v~L~~Ia~~P~ 292 (559)
T KOG1334|consen 214 SEILETGYVENTKRLAPHEGPVHKLAVEPDSPKPFLSCGEDAVVFHIDLRQDVPAEKFV-CREADEKERVGLYTIAVDPR 292 (559)
T ss_pred eeeccccceecceecccccCccceeeecCCCCCcccccccccceeeeeeccCCccceee-eeccCCccceeeeeEecCCC
Confidence 876443 222 122237999999999999876 68899999999988877664443333 4444444 567888888
Q ss_pred CCCEEEEEECCCCEEEEEeeecccceecchhhHHHHHhhccchhhhhccCceeEEeeccccccccceeEEeecCCceEEE
Q 003579 325 NGRHILSAGQDRAFRLFSVIQDQQSRELSQRHVAKRARKLKMKEEELKLKPVIAFDCAEIRERDWCNVVTCHMDTAQAYV 404 (809)
Q Consensus 325 ~~~~l~s~~~dg~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 404 (809)
+...+++++.|..+++||.+.-.....- + ++..|
T Consensus 293 nt~~faVgG~dqf~RvYD~R~~~~e~~n--~-------------------~~~~f------------------------- 326 (559)
T KOG1334|consen 293 NTNEFAVGGSDQFARVYDQRRIDKEENN--G-------------------VLDKF------------------------- 326 (559)
T ss_pred CccccccCChhhhhhhhcccchhhcccc--c-------------------hhhhc-------------------------
Confidence 4558999999999999997643221100 0 00000
Q ss_pred EEeeeeeecceeeecCCCCCCCeEEEEEcCCCCEEEEEeCCCcEEEEECCCCceeeee--e---CcccccccCccc--cE
Q 003579 405 WRLQNFVLGEHILRPCPENPTAVKACTISACGNFAVLGTAGGWIERFNLQSGISRGSY--L---DMSERSNYAHNG--EV 477 (809)
Q Consensus 405 w~~~~~~~~~~~~~~~~~~~~~v~~v~~s~~g~~l~~g~~~g~i~i~~~~~~~~~~~~--~---~~~~~~~~~h~~--~v 477 (809)
...+... .....|++++++.+|.-+++.+.|-.|++|+-.-+...... . .......++|.. .|
T Consensus 327 -------~p~hl~~---d~~v~ITgl~Ysh~~sElLaSYnDe~IYLF~~~~~~G~~p~~~s~~~~~~k~vYKGHrN~~TV 396 (559)
T KOG1334|consen 327 -------CPHHLVE---DDPVNITGLVYSHDGSELLASYNDEDIYLFNKSMGDGSEPDPSSPREQYVKRVYKGHRNSRTV 396 (559)
T ss_pred -------CCccccc---cCcccceeEEecCCccceeeeecccceEEeccccccCCCCCCCcchhhccchhhccccccccc
Confidence 0011111 23478999999999999999999999999964333221000 0 111112357754 46
Q ss_pred EEEEE-cCCCCEEEEEeCcCeEEEEECCCCceeeeeecC-CCeEEEEEeeCCCEEEEEeCCCeEEEEEcCCC
Q 003579 478 VGVAC-DSTNTLMISAGYHGDIKVWDFKGRDLKSRWEVG-CSLVKIVYHRVNGLLATVADDLVIRLFDVVAL 547 (809)
Q Consensus 478 ~~l~~-~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~-~~i~~~~~s~~~~~la~~~~d~~I~v~d~~~~ 547 (809)
.++-| -|...++++|+.-|.|.||+-++++++..++.. .-|+|+.-||--..||+.+-|..|+||-..+.
T Consensus 397 KgVNFfGPrsEyVvSGSDCGhIFiW~K~t~eii~~MegDr~VVNCLEpHP~~PvLAsSGid~DVKIWTP~~~ 468 (559)
T KOG1334|consen 397 KGVNFFGPRSEYVVSGSDCGHIFIWDKKTGEIIRFMEGDRHVVNCLEPHPHLPVLASSGIDHDVKIWTPLTA 468 (559)
T ss_pred ceeeeccCccceEEecCccceEEEEecchhHHHHHhhcccceEeccCCCCCCchhhccCCccceeeecCCcc
Confidence 67765 577899999999999999999999999888765 57889999999999999999999999976443
No 214
>KOG0303 consensus Actin-binding protein Coronin, contains WD40 repeats [Cytoskeleton]
Probab=99.70 E-value=2.3e-15 Score=145.73 Aligned_cols=213 Identities=12% Similarity=0.141 Sum_probs=174.5
Q ss_pred eeecCCCCCCCeEEEEEcC-CCCEEEEEeCCCcEEEEECCCCceeeeeeCcccccccCccccEEEEEEcCCC-CEEEEEe
Q 003579 416 ILRPCPENPTAVKACTISA-CGNFAVLGTAGGWIERFNLQSGISRGSYLDMSERSNYAHNGEVVGVACDSTN-TLMISAG 493 (809)
Q Consensus 416 ~~~~~~~~~~~v~~v~~s~-~g~~l~~g~~~g~i~i~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~-~~l~s~~ 493 (809)
......+|.+++..++|+| +.+.+++|+.|..|.+|.+..+.....+. .+...+.+|...|.-++|+|.. +.|++++
T Consensus 73 ~~P~v~GHt~~vLDi~w~PfnD~vIASgSeD~~v~vW~IPe~~l~~~lt-epvv~L~gH~rrVg~V~wHPtA~NVLlsag 151 (472)
T KOG0303|consen 73 SYPLVCGHTAPVLDIDWCPFNDCVIASGSEDTKVMVWQIPENGLTRDLT-EPVVELYGHQRRVGLVQWHPTAPNVLLSAG 151 (472)
T ss_pred CCCCccCccccccccccCccCCceeecCCCCceEEEEECCCcccccCcc-cceEEEeecceeEEEEeecccchhhHhhcc
Confidence 3455678999999999999 55788999999999999998766554433 2223456999999999999964 6889999
Q ss_pred CcCeEEEEECCCCceeeeeecCCCeEEEEEeeCCCEEEEEeCCCeEEEEEcCCCeEEEEEecCCCC-eeeEEECCCCCEE
Q 003579 494 YHGDIKVWDFKGRDLKSRWEVGCSLVKIVYHRVNGLLATVADDLVIRLFDVVALRMVRKFEGHTDR-ITDFCFSEDGKWL 572 (809)
Q Consensus 494 ~dg~i~iwd~~~~~~~~~~~~~~~i~~~~~s~~~~~la~~~~d~~I~v~d~~~~~~~~~~~~h~~~-I~~l~fspdg~~l 572 (809)
.|.+|.+||+.+++.+-++.+...|.++.|+.||.++++.+.|..|||||.++++++.+-.+|.+. -..+.|-.+|..+
T Consensus 152 ~Dn~v~iWnv~tgeali~l~hpd~i~S~sfn~dGs~l~TtckDKkvRv~dpr~~~~v~e~~~heG~k~~Raifl~~g~i~ 231 (472)
T KOG0303|consen 152 SDNTVSIWNVGTGEALITLDHPDMVYSMSFNRDGSLLCTTCKDKKVRVIDPRRGTVVSEGVAHEGAKPARAIFLASGKIF 231 (472)
T ss_pred CCceEEEEeccCCceeeecCCCCeEEEEEeccCCceeeeecccceeEEEcCCCCcEeeecccccCCCcceeEEeccCcee
Confidence 999999999999999999998899999999999999999999999999999999999999888753 4456788888844
Q ss_pred EEEe---CCCeEEEEEcCCc---cEEEEeeeCcceEEEEEcCCCCeEEEEEeCCCeEEEeecC
Q 003579 573 LSSG---MDGSLRIWDVILA---RQIDAIHVDVSITALSLSPNMDVLATAHVDQNGVYLWVNR 629 (809)
Q Consensus 573 ~s~s---~D~~I~vwd~~~~---~~i~~~~~~~~v~~l~~spdg~~lat~~~d~~~i~lW~~~ 629 (809)
-||- .+..+.+||-.+- -....+...+.|.---|.||...+..++.....|+-|.+.
T Consensus 232 tTGfsr~seRq~aLwdp~nl~eP~~~~elDtSnGvl~PFyD~dt~ivYl~GKGD~~IRYyEit 294 (472)
T KOG0303|consen 232 TTGFSRMSERQIALWDPNNLEEPIALQELDTSNGVLLPFYDPDTSIVYLCGKGDSSIRYFEIT 294 (472)
T ss_pred eeccccccccceeccCcccccCcceeEEeccCCceEEeeecCCCCEEEEEecCCcceEEEEec
Confidence 4442 5788999986553 2344555666788888999999999888766679988763
No 215
>KOG1523 consensus Actin-related protein Arp2/3 complex, subunit ARPC1/p41-ARC [Cytoskeleton]
Probab=99.69 E-value=1.3e-14 Score=137.24 Aligned_cols=166 Identities=11% Similarity=0.148 Sum_probs=138.8
Q ss_pred EEEcCCCCCEEEEEEcCCCCEEEEEeCCCeEEEEEeeCCe---EEEEEeccCCCcEEEEEEecCCCCEEEEEcCCCcEEE
Q 003579 175 YEFKGWGSSISSCVSSPALDVVAVGCSDGKIHVHNVRYDE---ELVTFTHSMRGAVTALAFSSDGQPLLASGASSGVISI 251 (809)
Q Consensus 175 ~~~~~~~~~I~~l~~sp~~~~la~g~~dg~i~iwd~~~~~---~~~~~~~~~~~~V~~l~fs~dg~~~lasg~~dg~I~i 251 (809)
+.+.....+|+|.+|++|+..+|++..+..|.||.....+ ...++..| ...|+.++|+|..+ .+++++.|..-++
T Consensus 4 ~~~~~~~~pitchAwn~drt~iAv~~~~~evhiy~~~~~~~w~~~htls~H-d~~vtgvdWap~sn-rIvtcs~drnayV 81 (361)
T KOG1523|consen 4 VVFHRLLEPITCHAWNSDRTQIAVSPNNHEVHIYSMLGADLWEPAHTLSEH-DKIVTGVDWAPKSN-RIVTCSHDRNAYV 81 (361)
T ss_pred EEeeeccCceeeeeecCCCceEEeccCCceEEEEEecCCCCceeceehhhh-CcceeEEeecCCCC-ceeEccCCCCccc
Confidence 3444456899999999999999999999999999987654 56666665 88999999999987 7899999999999
Q ss_pred EEC-CCc--eeeeeeecccccceEEEEEecCCCEEEEEcCCCcEEEEEeeCCCCCceeEEeccCCCCCCeeEEEecCCCE
Q 003579 252 WNL-EKR--RLQSVIREAHDNAIISLHFFANEPVLMSASADNSIKMWIFDTTDGDPRLLRFRSGHSAPPLCIRFYANGRH 328 (809)
Q Consensus 252 wdl-~~~--~~~~~~~~~h~~~V~~l~~~~~~~~l~s~s~d~~i~vw~~~~~~~~~~~~~~~~~h~~~v~~i~~~~~~~~ 328 (809)
|.. ..+ +..-.+. .|+...+++.|+|.++.+++|+.-..|.||-++..+.-+........+...|+++.|+|++-.
T Consensus 82 w~~~~~~~WkptlvLl-RiNrAAt~V~WsP~enkFAVgSgar~isVcy~E~ENdWWVsKhikkPirStv~sldWhpnnVL 160 (361)
T KOG1523|consen 82 WTQPSGGTWKPTLVLL-RINRAATCVKWSPKENKFAVGSGARLISVCYYEQENDWWVSKHIKKPIRSTVTSLDWHPNNVL 160 (361)
T ss_pred cccCCCCeeccceeEE-EeccceeeEeecCcCceEEeccCccEEEEEEEecccceehhhhhCCccccceeeeeccCCcce
Confidence 998 444 3333444 588999999999999999999999999999888765443333444567788999999999999
Q ss_pred EEEEECCCCEEEEEe
Q 003579 329 ILSAGQDRAFRLFSV 343 (809)
Q Consensus 329 l~s~~~dg~i~~wd~ 343 (809)
|+.|+.|+..++|+.
T Consensus 161 laaGs~D~k~rVfSa 175 (361)
T KOG1523|consen 161 LAAGSTDGKCRVFSA 175 (361)
T ss_pred ecccccCcceeEEEE
Confidence 999999999999985
No 216
>KOG0974 consensus WD-repeat protein WDR6, WD repeat superfamily [General function prediction only]
Probab=99.68 E-value=1.5e-13 Score=149.60 Aligned_cols=272 Identities=15% Similarity=0.192 Sum_probs=193.9
Q ss_pred CCcEEEEEeCCeEEEEECCeEEEEECCee--EE------EEccccccEEEE-EEeCCEEEEEeCCCcEEEEEcCCCcccc
Q 003579 57 KKIRALASYRDYTFAAYGNHIAVVKRAHQ--VA------TWSRHSAKVNLL-LLFGEHILSIDIDGNMFIWAFKGIEENL 127 (809)
Q Consensus 57 ~~I~~la~~~~~~~~a~g~~i~vw~~~~~--~~------~~~~h~~~V~~l-~~~g~~l~s~~~dg~i~vWd~~~~~~~~ 127 (809)
.+.++.++-.+++++++|..|.+||.... +. -+..| .+... ...+.+++++..-+.+.+=+......
T Consensus 8 ~~l~~~~~~~~~llag~gp~i~~yd~~s~~li~~~~~~~~~~~H--~~e~~~~l~~~~~v~~~~~~~v~~~~~~~~~~-- 83 (967)
T KOG0974|consen 8 GPLNLPQLVSDYLLAGSGPEILVYDLSSGCLIRHLIQSKILEVH--RGEGKVKLLSGKIVTCAKSDEVYVKEASNQII-- 83 (967)
T ss_pred ccccchhhccceeeecCCCceEEeeCCchhHhhhhhhhcccccc--cccccceeccceEEEEEeecceeecchhhhhh--
Confidence 44455555558888899999999986432 11 13445 11111 12466777776655544433222111
Q ss_pred ceeeeEEcCCccccEEEEeCCCCCCEEEEEeCCCeEEEEeCCCCceEEEEcCCCCC----EEEEEEcCCCCEEEEEeCCC
Q 003579 128 APVGHVKLDDKFTPTCIMHPDTYLNKVIVGSQEGSLQLWNISTKKKLYEFKGWGSS----ISSCVSSPALDVVAVGCSDG 203 (809)
Q Consensus 128 ~~~~~~~~~~~~~~~~~~~p~~~~~~l~~~~~dg~i~lwd~~~~~~~~~~~~~~~~----I~~l~~sp~~~~la~g~~dg 203 (809)
.. -...+..+-+.... .++++++.++.+.+||.+.+............ ..-+.++++.-++++|+.-+
T Consensus 84 ---~~---~s~wi~g~~l~~e~--k~i~l~~~~ns~~i~d~~~~~~~~~i~~~er~~l~~~~~~g~s~~~~~i~~gsv~~ 155 (967)
T KOG0974|consen 84 ---ER---FSDWIFGAKLFEEN--KKIALVTSRNSLLIRDSKNSSVLSKIQSDERCTLYSSLIIGDSAEELYIASGSVFG 155 (967)
T ss_pred ---hh---ccccccccchhhhc--ceEEEEEcCceEEEEecccCceehhcCCCceEEEEeEEEEeccCcEEEEEeccccc
Confidence 11 11122223334444 67999999999999999888877766543221 12234577777999999999
Q ss_pred eEEEEEeeCCeEEEEEeccCCCcEEEEEEecCCCCEEEEEcCCCcEEEEECCCceeeeeeecccccceEEEEEecCCCEE
Q 003579 204 KIHVHNVRYDEELVTFTHSMRGAVTALAFSSDGQPLLASGASSGVISIWNLEKRRLQSVIREAHDNAIISLHFFANEPVL 283 (809)
Q Consensus 204 ~i~iwd~~~~~~~~~~~~~~~~~V~~l~fs~dg~~~lasg~~dg~I~iwdl~~~~~~~~~~~~h~~~V~~l~~~~~~~~l 283 (809)
.|.+|+....+.-..+.+ |.+.|.++.|+-||+ ++++.+.|.++++|++++++.....--+|+..|..+.|+|+ .+
T Consensus 156 ~iivW~~~~dn~p~~l~G-HeG~iF~i~~s~dg~-~i~s~SdDRsiRlW~i~s~~~~~~~~fgHsaRvw~~~~~~n--~i 231 (967)
T KOG0974|consen 156 EIIVWKPHEDNKPIRLKG-HEGSIFSIVTSLDGR-YIASVSDDRSIRLWPIDSREVLGCTGFGHSARVWACCFLPN--RI 231 (967)
T ss_pred cEEEEeccccCCcceecc-cCCceEEEEEccCCc-EEEEEecCcceeeeecccccccCcccccccceeEEEEeccc--ee
Confidence 999999984444344444 599999999999999 99999999999999999998877333489999999999998 89
Q ss_pred EEEcCCCcEEEEEeeCCCCCceeEEeccCCC-CCCeeEEEecCCCEEEEEECCCCEEEEEeeecccc
Q 003579 284 MSASADNSIKMWIFDTTDGDPRLLRFRSGHS-APPLCIRFYANGRHILSAGQDRAFRLFSVIQDQQS 349 (809)
Q Consensus 284 ~s~s~d~~i~vw~~~~~~~~~~~~~~~~~h~-~~v~~i~~~~~~~~l~s~~~dg~i~~wd~~~~~~~ 349 (809)
+|++.|.+.++|..+.. .+..+.+|. ..+..+...++...+++++.|+.+++|++......
T Consensus 232 ~t~gedctcrvW~~~~~-----~l~~y~~h~g~~iw~~~~~~~~~~~vT~g~Ds~lk~~~l~~r~~e 293 (967)
T KOG0974|consen 232 ITVGEDCTCRVWGVNGT-----QLEVYDEHSGKGIWKIAVPIGVIIKVTGGNDSTLKLWDLNGRGLE 293 (967)
T ss_pred EEeccceEEEEEecccc-----eehhhhhhhhcceeEEEEcCCceEEEeeccCcchhhhhhhccccc
Confidence 99999999999965543 344566665 46889999999999999999999999998765443
No 217
>KOG0771 consensus Prolactin regulatory element-binding protein/Protein transport protein SEC12p [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.68 E-value=9.2e-16 Score=150.65 Aligned_cols=203 Identities=22% Similarity=0.258 Sum_probs=153.0
Q ss_pred EEEEEecCCCCEEEEEcCCCcEEEEECCCceeeeeeecccccceEEEEEecCCCEEEEEcCCCcEEEEEeeCCCCCceeE
Q 003579 228 TALAFSSDGQPLLASGASSGVISIWNLEKRRLQSVIREAHDNAIISLHFFANEPVLMSASADNSIKMWIFDTTDGDPRLL 307 (809)
Q Consensus 228 ~~l~fs~dg~~~lasg~~dg~I~iwdl~~~~~~~~~~~~h~~~V~~l~~~~~~~~l~s~s~d~~i~vw~~~~~~~~~~~~ 307 (809)
.+++|+.+|. .|++|+.||.+|+|+..+...+.... .|...|.++.|+||++.|++.+.| ..+||+.+......+
T Consensus 148 k~vaf~~~gs-~latgg~dg~lRv~~~Ps~~t~l~e~-~~~~eV~DL~FS~dgk~lasig~d-~~~VW~~~~g~~~a~-- 222 (398)
T KOG0771|consen 148 KVVAFNGDGS-KLATGGTDGTLRVWEWPSMLTILEEI-AHHAEVKDLDFSPDGKFLASIGAD-SARVWSVNTGAALAR-- 222 (398)
T ss_pred eEEEEcCCCC-EeeeccccceEEEEecCcchhhhhhH-hhcCccccceeCCCCcEEEEecCC-ceEEEEeccCchhhh--
Confidence 7899999998 99999999999999987777666666 799999999999999999999999 999998877632111
Q ss_pred EeccCCCCCCeeEEEecCC---C--EEEEEECCCCEEEEEeeecccceecchhhHHHHHhhccchhhhhccCceeEEeec
Q 003579 308 RFRSGHSAPPLCIRFYANG---R--HILSAGQDRAFRLFSVIQDQQSRELSQRHVAKRARKLKMKEEELKLKPVIAFDCA 382 (809)
Q Consensus 308 ~~~~~h~~~v~~i~~~~~~---~--~l~s~~~dg~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~ 382 (809)
.....-......++|..|+ . .++....-+.++.|++........+.
T Consensus 223 ~t~~~k~~~~~~cRF~~d~~~~~l~laa~~~~~~~v~~~~~~~w~~~~~l~----------------------------- 273 (398)
T KOG0771|consen 223 KTPFSKDEMFSSCRFSVDNAQETLRLAASQFPGGGVRLCDISLWSGSNFLR----------------------------- 273 (398)
T ss_pred cCCcccchhhhhceecccCCCceEEEEEecCCCCceeEEEeeeeccccccc-----------------------------
Confidence 1112333455677887766 2 22233344556666654322111000
Q ss_pred cccccccceeEEeecCCceEEEEEeeeeeecceeeecCCCCCCCeEEEEEcCCCCEEEEEeCCCcEEEEECCCCceeeee
Q 003579 383 EIRERDWCNVVTCHMDTAQAYVWRLQNFVLGEHILRPCPENPTAVKACTISACGNFAVLGTAGGWIERFNLQSGISRGSY 462 (809)
Q Consensus 383 ~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~v~~v~~s~~g~~l~~g~~~g~i~i~~~~~~~~~~~~ 462 (809)
..........|+++++|.||+++++|+.+|.|.+|+..+.+.....
T Consensus 274 ----------------------------------~~~~~~~~~siSsl~VS~dGkf~AlGT~dGsVai~~~~~lq~~~~v 319 (398)
T KOG0771|consen 274 ----------------------------------LRKKIKRFKSISSLAVSDDGKFLALGTMDGSVAIYDAKSLQRLQYV 319 (398)
T ss_pred ----------------------------------hhhhhhccCcceeEEEcCCCcEEEEeccCCcEEEEEeceeeeeEee
Confidence 0000111268999999999999999999999999999998888877
Q ss_pred eCcccccccCccccEEEEEEcCCCCEEEEEeCcCeEEEEECCC
Q 003579 463 LDMSERSNYAHNGEVVGVACDSTNTLMISAGYHGDIKVWDFKG 505 (809)
Q Consensus 463 ~~~~~~~~~~h~~~v~~l~~~~~~~~l~s~~~dg~i~iwd~~~ 505 (809)
+ ..|...|+++.|+|+.+++++.+.|....+..+.-
T Consensus 320 k-------~aH~~~VT~ltF~Pdsr~~~svSs~~~~~v~~l~v 355 (398)
T KOG0771|consen 320 K-------EAHLGFVTGLTFSPDSRYLASVSSDNEAAVTKLAV 355 (398)
T ss_pred h-------hhheeeeeeEEEcCCcCcccccccCCceeEEEEee
Confidence 6 49999999999999999999999998888876543
No 218
>PRK01742 tolB translocation protein TolB; Provisional
Probab=99.67 E-value=3.8e-15 Score=161.59 Aligned_cols=236 Identities=17% Similarity=0.189 Sum_probs=164.6
Q ss_pred CCeEEEEeCCCCceEEEEcCCCCCEEEEEEcCCCCEEEEEeCC---CeEEEEEeeCCeEEEEEeccCCCcEEEEEEecCC
Q 003579 160 EGSLQLWNISTKKKLYEFKGWGSSISSCVSSPALDVVAVGCSD---GKIHVHNVRYDEELVTFTHSMRGAVTALAFSSDG 236 (809)
Q Consensus 160 dg~i~lwd~~~~~~~~~~~~~~~~I~~l~~sp~~~~la~g~~d---g~i~iwd~~~~~~~~~~~~~~~~~V~~l~fs~dg 236 (809)
+..|.+||..... .+.+..|...+.+.+|||||+.|+.++.+ ..|++||+.+++....... .+...+++|+|||
T Consensus 183 ~~~i~i~d~dg~~-~~~lt~~~~~v~~p~wSPDG~~la~~s~~~~~~~i~i~dl~tg~~~~l~~~--~g~~~~~~wSPDG 259 (429)
T PRK01742 183 PYEVRVADYDGFN-QFIVNRSSQPLMSPAWSPDGSKLAYVSFENKKSQLVVHDLRSGARKVVASF--RGHNGAPAFSPDG 259 (429)
T ss_pred eEEEEEECCCCCC-ceEeccCCCccccceEcCCCCEEEEEEecCCCcEEEEEeCCCCceEEEecC--CCccCceeECCCC
Confidence 4689999985544 56677788899999999999999987653 4799999988764322111 2345578999999
Q ss_pred CCEEEEEcCCCcEEE--EECCCceeeeeeecccccceEEEEEecCCCEEEEEc-CCCcEEEEEeeCCCCCceeEEeccCC
Q 003579 237 QPLLASGASSGVISI--WNLEKRRLQSVIREAHDNAIISLHFFANEPVLMSAS-ADNSIKMWIFDTTDGDPRLLRFRSGH 313 (809)
Q Consensus 237 ~~~lasg~~dg~I~i--wdl~~~~~~~~~~~~h~~~V~~l~~~~~~~~l~s~s-~d~~i~vw~~~~~~~~~~~~~~~~~h 313 (809)
+.++++.+.+|.+.| ||+.++... .+. .+...+....|+||++.|+.++ .++...+|+++...+..+.+ ++
T Consensus 260 ~~La~~~~~~g~~~Iy~~d~~~~~~~-~lt-~~~~~~~~~~wSpDG~~i~f~s~~~g~~~I~~~~~~~~~~~~l----~~ 333 (429)
T PRK01742 260 SRLAFASSKDGVLNIYVMGANGGTPS-QLT-SGAGNNTEPSWSPDGQSILFTSDRSGSPQVYRMSASGGGASLV----GG 333 (429)
T ss_pred CEEEEEEecCCcEEEEEEECCCCCeE-eec-cCCCCcCCEEECCCCCEEEEEECCCCCceEEEEECCCCCeEEe----cC
Confidence 944444456776555 576666543 344 5667788999999999766554 57899999988765433332 33
Q ss_pred CCCCeeEEEecCCCEEEEEECCCCEEEEEeeecccceecchhhHHHHHhhccchhhhhccCceeEEeeccccccccceeE
Q 003579 314 SAPPLCIRFYANGRHILSAGQDRAFRLFSVIQDQQSRELSQRHVAKRARKLKMKEEELKLKPVIAFDCAEIRERDWCNVV 393 (809)
Q Consensus 314 ~~~v~~i~~~~~~~~l~s~~~dg~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~ 393 (809)
.. ....|+|||++|+..+.++ +..||+.++.... +..
T Consensus 334 ~~--~~~~~SpDG~~ia~~~~~~-i~~~Dl~~g~~~~-lt~--------------------------------------- 370 (429)
T PRK01742 334 RG--YSAQISADGKTLVMINGDN-VVKQDLTSGSTEV-LSS--------------------------------------- 370 (429)
T ss_pred CC--CCccCCCCCCEEEEEcCCC-EEEEECCCCCeEE-ecC---------------------------------------
Confidence 33 4578999999999887765 5568875543211 000
Q ss_pred EeecCCceEEEEEeeeeeecceeeecCCCCCCCeEEEEEcCCCCEEEEEeCCCcEEEEECC--CCceeeeeeCccccccc
Q 003579 394 TCHMDTAQAYVWRLQNFVLGEHILRPCPENPTAVKACTISACGNFAVLGTAGGWIERFNLQ--SGISRGSYLDMSERSNY 471 (809)
Q Consensus 394 ~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~v~~v~~s~~g~~l~~g~~~g~i~i~~~~--~~~~~~~~~~~~~~~~~ 471 (809)
. .....+.|+|+|++++.++.+|.+.+|.+. +|.....+.
T Consensus 371 ----------------------------~--~~~~~~~~sPdG~~i~~~s~~g~~~~l~~~~~~G~~~~~l~-------- 412 (429)
T PRK01742 371 ----------------------------T--FLDESPSISPNGIMIIYSSTQGLGKVLQLVSADGRFKARLP-------- 412 (429)
T ss_pred ----------------------------C--CCCCCceECCCCCEEEEEEcCCCceEEEEEECCCCceEEcc--------
Confidence 0 112346799999999999999988887753 455555553
Q ss_pred CccccEEEEEEcCC
Q 003579 472 AHNGEVVGVACDST 485 (809)
Q Consensus 472 ~h~~~v~~l~~~~~ 485 (809)
.|.+.+...+|+|-
T Consensus 413 ~~~g~~~~p~wsp~ 426 (429)
T PRK01742 413 GSDGQVKFPAWSPY 426 (429)
T ss_pred CCCCCCCCcccCCC
Confidence 77788888999874
No 219
>KOG0974 consensus WD-repeat protein WDR6, WD repeat superfamily [General function prediction only]
Probab=99.66 E-value=2.4e-12 Score=140.47 Aligned_cols=256 Identities=15% Similarity=0.179 Sum_probs=178.3
Q ss_pred EEEEEcCCeEEEEEcCccEEEEecCC-CCCCcEEEEEeCCeEEEEECCe-EEEEECCee---------EEEEccccccEE
Q 003579 29 FVTVSVGKAFHIYNCAKLNLVLVGPQ-LPKKIRALASYRDYTFAAYGNH-IAVVKRAHQ---------VATWSRHSAKVN 97 (809)
Q Consensus 29 ~i~~~~~~~i~iwd~~~~~~~~~~~~-~~~~I~~la~~~~~~~~a~g~~-i~vw~~~~~---------~~~~~~h~~~V~ 97 (809)
++.++.|-.+.+||+..+.++.-..+ +.-++. .+.++.-+.+.. |........ ...+..+... .
T Consensus 19 ~llag~gp~i~~yd~~s~~li~~~~~~~~~~~H----~~e~~~~l~~~~~v~~~~~~~v~~~~~~~~~~~~~s~wi~g-~ 93 (967)
T KOG0974|consen 19 YLLAGSGPEILVYDLSSGCLIRHLIQSKILEVH----RGEGKVKLLSGKIVTCAKSDEVYVKEASNQIIERFSDWIFG-A 93 (967)
T ss_pred eeeecCCCceEEeeCCchhHhhhhhhhcccccc----cccccceeccceEEEEEeecceeecchhhhhhhhccccccc-c
Confidence 45566678899999998765543311 111111 222222222222 222221111 1112222211 2
Q ss_pred EEEEeCCEEEEEeCCCcEEEEEcCCCccccceeeeEEcCCcc----ccEEEEeCCCCCCEEEEEeCCCeEEEEeCCCCce
Q 003579 98 LLLLFGEHILSIDIDGNMFIWAFKGIEENLAPVGHVKLDDKF----TPTCIMHPDTYLNKVIVGSQEGSLQLWNISTKKK 173 (809)
Q Consensus 98 ~l~~~g~~l~s~~~dg~i~vWd~~~~~~~~~~~~~~~~~~~~----~~~~~~~p~~~~~~l~~~~~dg~i~lwd~~~~~~ 173 (809)
.+.+....++.++.++.+-+||...+.. ...+...... ...+..+++. -++++|+.-+.|.+|+....+.
T Consensus 94 ~l~~e~k~i~l~~~~ns~~i~d~~~~~~----~~~i~~~er~~l~~~~~~g~s~~~--~~i~~gsv~~~iivW~~~~dn~ 167 (967)
T KOG0974|consen 94 KLFEENKKIALVTSRNSLLIRDSKNSSV----LSKIQSDERCTLYSSLIIGDSAEE--LYIASGSVFGEIIVWKPHEDNK 167 (967)
T ss_pred chhhhcceEEEEEcCceEEEEecccCce----ehhcCCCceEEEEeEEEEeccCcE--EEEEeccccccEEEEeccccCC
Confidence 2334577888888899999999987765 3333222221 2233356666 6799999999999999874444
Q ss_pred EEEEcCCCCCEEEEEEcCCCCEEEEEeCCCeEEEEEeeCCeEEEEEeccCCCcEEEEEEecCCCCEEEEEcCCCcEEEEE
Q 003579 174 LYEFKGWGSSISSCVSSPALDVVAVGCSDGKIHVHNVRYDEELVTFTHSMRGAVTALAFSSDGQPLLASGASSGVISIWN 253 (809)
Q Consensus 174 ~~~~~~~~~~I~~l~~sp~~~~la~g~~dg~i~iwd~~~~~~~~~~~~~~~~~V~~l~fs~dg~~~lasg~~dg~I~iwd 253 (809)
-..+.+|.+.|.++.++-+|+++++.+.|.++++|++++.+.......+|...|..+.|.|+ .+++++.|.+.++|+
T Consensus 168 p~~l~GHeG~iF~i~~s~dg~~i~s~SdDRsiRlW~i~s~~~~~~~~fgHsaRvw~~~~~~n---~i~t~gedctcrvW~ 244 (967)
T KOG0974|consen 168 PIRLKGHEGSIFSIVTSLDGRYIASVSDDRSIRLWPIDSREVLGCTGFGHSARVWACCFLPN---RIITVGEDCTCRVWG 244 (967)
T ss_pred cceecccCCceEEEEEccCCcEEEEEecCcceeeeecccccccCcccccccceeEEEEeccc---eeEEeccceEEEEEe
Confidence 44689999999999999999999999999999999999998877444556899999999998 589999999999997
Q ss_pred CCCceeeeeeeccc-ccceEEEEEecCCCEEEEEcCCCcEEEEEeeCC
Q 003579 254 LEKRRLQSVIREAH-DNAIISLHFFANEPVLMSASADNSIKMWIFDTT 300 (809)
Q Consensus 254 l~~~~~~~~~~~~h-~~~V~~l~~~~~~~~l~s~s~d~~i~vw~~~~~ 300 (809)
.+. ..+..+. .| ...|..++..++...++|++.|+.+++|++...
T Consensus 245 ~~~-~~l~~y~-~h~g~~iw~~~~~~~~~~~vT~g~Ds~lk~~~l~~r 290 (967)
T KOG0974|consen 245 VNG-TQLEVYD-EHSGKGIWKIAVPIGVIIKVTGGNDSTLKLWDLNGR 290 (967)
T ss_pred ccc-ceehhhh-hhhhcceeEEEEcCCceEEEeeccCcchhhhhhhcc
Confidence 654 4444666 55 457999999999999999999999999987543
No 220
>PRK01742 tolB translocation protein TolB; Provisional
Probab=99.65 E-value=1.4e-14 Score=157.17 Aligned_cols=237 Identities=11% Similarity=0.085 Sum_probs=158.7
Q ss_pred CCeEEEEEeeCCeEEEEEeccCCCcEEEEEEecCCCCEEEEEcC---CCcEEEEECCCceeeeeeecccccceEEEEEec
Q 003579 202 DGKIHVHNVRYDEELVTFTHSMRGAVTALAFSSDGQPLLASGAS---SGVISIWNLEKRRLQSVIREAHDNAIISLHFFA 278 (809)
Q Consensus 202 dg~i~iwd~~~~~~~~~~~~~~~~~V~~l~fs~dg~~~lasg~~---dg~I~iwdl~~~~~~~~~~~~h~~~V~~l~~~~ 278 (809)
+..|.+||..... ...+..+ ...+.+.+|+|||+ .|+..+. +..|++||+.+++...... ..+....++|+|
T Consensus 183 ~~~i~i~d~dg~~-~~~lt~~-~~~v~~p~wSPDG~-~la~~s~~~~~~~i~i~dl~tg~~~~l~~--~~g~~~~~~wSP 257 (429)
T PRK01742 183 PYEVRVADYDGFN-QFIVNRS-SQPLMSPAWSPDGS-KLAYVSFENKKSQLVVHDLRSGARKVVAS--FRGHNGAPAFSP 257 (429)
T ss_pred eEEEEEECCCCCC-ceEeccC-CCccccceEcCCCC-EEEEEEecCCCcEEEEEeCCCCceEEEec--CCCccCceeECC
Confidence 4689999986544 4445444 67899999999999 5665543 2479999998875432221 222344689999
Q ss_pred CCCEEEEEc-CCCcEEEEEeeCCCCCceeEEeccCCCCCCeeEEEecCCCEEEEEE-CCCCEEEEEeeecccceecchhh
Q 003579 279 NEPVLMSAS-ADNSIKMWIFDTTDGDPRLLRFRSGHSAPPLCIRFYANGRHILSAG-QDRAFRLFSVIQDQQSRELSQRH 356 (809)
Q Consensus 279 ~~~~l~s~s-~d~~i~vw~~~~~~~~~~~~~~~~~h~~~v~~i~~~~~~~~l~s~~-~dg~i~~wd~~~~~~~~~~~~~~ 356 (809)
||+.|+.++ .+|.+.+|.++...+. ...+..+...+....|+|||+.|+.++ .++...+|++.........
T Consensus 258 DG~~La~~~~~~g~~~Iy~~d~~~~~---~~~lt~~~~~~~~~~wSpDG~~i~f~s~~~g~~~I~~~~~~~~~~~~---- 330 (429)
T PRK01742 258 DGSRLAFASSKDGVLNIYVMGANGGT---PSQLTSGAGNNTEPSWSPDGQSILFTSDRSGSPQVYRMSASGGGASL---- 330 (429)
T ss_pred CCCEEEEEEecCCcEEEEEEECCCCC---eEeeccCCCCcCCEEECCCCCEEEEEECCCCCceEEEEECCCCCeEE----
Confidence 999888764 6888888877765443 233445666788899999999877655 5677777775422110000
Q ss_pred HHHHHhhccchhhhhccCceeEEeeccccccccceeEEeecCCceEEEEEeeeeeecceeeecCCCCCCCeEEEEEcCCC
Q 003579 357 VAKRARKLKMKEEELKLKPVIAFDCAEIRERDWCNVVTCHMDTAQAYVWRLQNFVLGEHILRPCPENPTAVKACTISACG 436 (809)
Q Consensus 357 ~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~v~~v~~s~~g 436 (809)
T Consensus 331 -------------------------------------------------------------------------------- 330 (429)
T PRK01742 331 -------------------------------------------------------------------------------- 330 (429)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred CEEEEEeCCCcEEEEECCCCceeeeeeCcccccccCccccEEEEEEcCCCCEEEEEeCcCeEEEEECCCCceeeeeecCC
Q 003579 437 NFAVLGTAGGWIERFNLQSGISRGSYLDMSERSNYAHNGEVVGVACDSTNTLMISAGYHGDIKVWDFKGRDLKSRWEVGC 516 (809)
Q Consensus 437 ~~l~~g~~~g~i~i~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~ 516 (809)
+ .+.. ....|+|+|++++.++.++ +.+||+.+++....... .
T Consensus 331 -------------------------l---------~~~~--~~~~~SpDG~~ia~~~~~~-i~~~Dl~~g~~~~lt~~-~ 372 (429)
T PRK01742 331 -------------------------V---------GGRG--YSAQISADGKTLVMINGDN-VVKQDLTSGSTEVLSST-F 372 (429)
T ss_pred -------------------------e---------cCCC--CCccCCCCCCEEEEEcCCC-EEEEECCCCCeEEecCC-C
Confidence 0 0111 2345667777666666544 44477776654322211 2
Q ss_pred CeEEEEEeeCCCEEEEEeCCCeEEEEEc--CCCeEEEEEecCCCCeeeEEECCC
Q 003579 517 SLVKIVYHRVNGLLATVADDLVIRLFDV--VALRMVRKFEGHTDRITDFCFSED 568 (809)
Q Consensus 517 ~i~~~~~s~~~~~la~~~~d~~I~v~d~--~~~~~~~~~~~h~~~I~~l~fspd 568 (809)
....+.|+|+|++|++++.++.+.+|++ .+++.++++.+|.+.+.+.+|||-
T Consensus 373 ~~~~~~~sPdG~~i~~~s~~g~~~~l~~~~~~G~~~~~l~~~~g~~~~p~wsp~ 426 (429)
T PRK01742 373 LDESPSISPNGIMIIYSSTQGLGKVLQLVSADGRFKARLPGSDGQVKFPAWSPY 426 (429)
T ss_pred CCCCceECCCCCEEEEEEcCCCceEEEEEECCCCceEEccCCCCCCCCcccCCC
Confidence 2345779999999999998888888875 357888899999999999999984
No 221
>KOG2139 consensus WD40 repeat protein [General function prediction only]
Probab=99.65 E-value=1.1e-13 Score=132.83 Aligned_cols=199 Identities=19% Similarity=0.268 Sum_probs=145.2
Q ss_pred cccEEEEeCCCCCCEEEEEeCCCeEEEEeCCCCceEEEEc-CCCCCEEEEEEcCCC-CEEEEEeCCCeEEEEEeeCC---
Q 003579 139 FTPTCIMHPDTYLNKVIVGSQEGSLQLWNISTKKKLYEFK-GWGSSISSCVSSPAL-DVVAVGCSDGKIHVHNVRYD--- 213 (809)
Q Consensus 139 ~~~~~~~~p~~~~~~l~~~~~dg~i~lwd~~~~~~~~~~~-~~~~~I~~l~~sp~~-~~la~g~~dg~i~iwd~~~~--- 213 (809)
.....++|+-. ..++++..|-.|++||-+. +....++ ..+..|+|++|-|.+ ..|++|+.. -|.+|....-
T Consensus 100 dlr~~aWhqH~--~~fava~nddvVriy~kss-t~pt~Lks~sQrnvtclawRPlsaselavgCr~-gIciW~~s~tln~ 175 (445)
T KOG2139|consen 100 DLRGVAWHQHI--IAFAVATNDDVVRIYDKSS-TCPTKLKSVSQRNVTCLAWRPLSASELAVGCRA-GICIWSDSRTLNA 175 (445)
T ss_pred ceeeEeechhh--hhhhhhccCcEEEEeccCC-CCCceecchhhcceeEEEeccCCcceeeeeecc-eeEEEEcCccccc
Confidence 34567788865 7899999999999999766 5544454 346789999999964 578888874 5899986521
Q ss_pred -e--------EEEEEeccCCCcEEEEEEecCCCCEEEEEc-CCCcEEEEECCCceeeeeeecccccceEEEEEecCCCEE
Q 003579 214 -E--------ELVTFTHSMRGAVTALAFSSDGQPLLASGA-SSGVISIWNLEKRRLQSVIREAHDNAIISLHFFANEPVL 283 (809)
Q Consensus 214 -~--------~~~~~~~~~~~~V~~l~fs~dg~~~lasg~-~dg~I~iwdl~~~~~~~~~~~~h~~~V~~l~~~~~~~~l 283 (809)
. ....+......+|++|.|.+||. .+++++ .+..|.|||..++..+.... ...+.++-+.|+||+.+|
T Consensus 176 ~r~~~~~s~~~~qvl~~pgh~pVtsmqwn~dgt-~l~tAS~gsssi~iWdpdtg~~~pL~~-~glgg~slLkwSPdgd~l 253 (445)
T KOG2139|consen 176 NRNIRMMSTHHLQVLQDPGHNPVTSMQWNEDGT-ILVTASFGSSSIMIWDPDTGQKIPLIP-KGLGGFSLLKWSPDGDVL 253 (445)
T ss_pred ccccccccccchhheeCCCCceeeEEEEcCCCC-EEeecccCcceEEEEcCCCCCcccccc-cCCCceeeEEEcCCCCEE
Confidence 1 11122222236899999999999 788777 67899999999998777665 456789999999999999
Q ss_pred EEEcCCCcEEEEEeeCCCCCceeEEeccCCCCCCeeEEEecCCCEEEEEECCCCEEEEEeeeccc
Q 003579 284 MSASADNSIKMWIFDTTDGDPRLLRFRSGHSAPPLCIRFYANGRHILSAGQDRAFRLFSVIQDQQ 348 (809)
Q Consensus 284 ~s~s~d~~i~vw~~~~~~~~~~~~~~~~~h~~~v~~i~~~~~~~~l~s~~~dg~i~~wd~~~~~~ 348 (809)
+.+.-|+..++|..... +...+...+ .+.|...+|+|+|++|+.+.. |.-++|++.-..+
T Consensus 254 faAt~davfrlw~e~q~---wt~erw~lg-sgrvqtacWspcGsfLLf~~s-gsp~lysl~f~~~ 313 (445)
T KOG2139|consen 254 FAATCDAVFRLWQENQS---WTKERWILG-SGRVQTACWSPCGSFLLFACS-GSPRLYSLTFDGE 313 (445)
T ss_pred EEecccceeeeehhccc---ceecceecc-CCceeeeeecCCCCEEEEEEc-CCceEEEEeecCC
Confidence 99999999999954332 122222223 338999999999998876653 3456777654433
No 222
>KOG2315 consensus Predicted translation initiation factor related to eIF-3a [Translation, ribosomal structure and biogenesis]
Probab=99.64 E-value=6.4e-13 Score=135.30 Aligned_cols=356 Identities=15% Similarity=0.201 Sum_probs=227.2
Q ss_pred EEEEeCCCeEEEEeCCCCceEEEEcCC---CCCEEEEEEcCCCCEEEEEeCCCeEEEEEeeCCeEEEEEeccCCCcEEEE
Q 003579 154 VIVGSQEGSLQLWNISTKKKLYEFKGW---GSSISSCVSSPALDVVAVGCSDGKIHVHNVRYDEELVTFTHSMRGAVTAL 230 (809)
Q Consensus 154 l~~~~~dg~i~lwd~~~~~~~~~~~~~---~~~I~~l~~sp~~~~la~g~~dg~i~iwd~~~~~~~~~~~~~~~~~V~~l 230 (809)
+++=+..+ +.+|+....+.......+ ..+.+..++|++|+++|.+. +..+.|++..++..+.+... . .+.++
T Consensus 5 ~aVRsSe~-~~l~~~~~~~~~~~~f~~~~~~~~~~v~~~S~~G~lfA~~~-~~~v~i~~~~~~~~~lt~~~--~-~~~~L 79 (566)
T KOG2315|consen 5 YAVRSSEG-FYLFNGPGSKDAVTVFEQNKTSRPCNVFAYSNNGRLFAYSD-NQVVKVFEIATLKVVLCVEL--K-KTYDL 79 (566)
T ss_pred EEEEccce-eEEeccCCccccccccccCCCCCcceeEEEcCCCcEEEEEc-CCeEEEEEccCCcEEEEecc--c-eeeee
Confidence 34444444 889987554433332222 45578889999999888876 47899999998875555443 3 79999
Q ss_pred EEecCCCCEEEEEc----------CCCcEEEEECCCceeeeeeecccccceEEEEEecCCCEEEEEcCCCcEEEEEeeCC
Q 003579 231 AFSSDGQPLLASGA----------SSGVISIWNLEKRRLQSVIREAHDNAIISLHFFANEPVLMSASADNSIKMWIFDTT 300 (809)
Q Consensus 231 ~fs~dg~~~lasg~----------~dg~I~iwdl~~~~~~~~~~~~h~~~V~~l~~~~~~~~l~s~s~d~~i~vw~~~~~ 300 (809)
.|+|-|. +|.+-- ..-.+.+|+.+++.....+....... ++..|+.|..+.+-. ..+.+.+|+....
T Consensus 80 ~fSP~g~-yL~T~e~~~i~~~~~~~~pn~~v~~vet~~~~s~~q~k~Q~~-W~~qfs~dEsl~arl-v~nev~f~~~~~f 156 (566)
T KOG2315|consen 80 LFSPKGN-YLLTWEPWAIYGPKNASNPNVLVYNVETGVQRSQIQKKMQNG-WVPQFSIDESLAARL-VSNEVQFYDLGSF 156 (566)
T ss_pred eeccccc-ccccccccccccCCCCCCCceeeeeeccceehhheehhhhcC-cccccccchhhhhhh-hcceEEEEecCCc
Confidence 9999998 555421 12458899999977766666334443 689999988643322 2467999977653
Q ss_pred CCCceeEEeccCCCCCCeeEEEecCC--CEEEE-----EECCCCEEEEEeeecccceecchhhHHHHHhhccchhhhhcc
Q 003579 301 DGDPRLLRFRSGHSAPPLCIRFYANG--RHILS-----AGQDRAFRLFSVIQDQQSRELSQRHVAKRARKLKMKEEELKL 373 (809)
Q Consensus 301 ~~~~~~~~~~~~h~~~v~~i~~~~~~--~~l~s-----~~~dg~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 373 (809)
.. ... .-|...++.+.++|.+ ..+++ .|.-+.+++|......+...+.....
T Consensus 157 ~~---~~~--kl~~~~i~~f~lSpgp~~~~vAvyvPe~kGaPa~vri~~~~~~~~~~~~a~ksF---------------- 215 (566)
T KOG2315|consen 157 KT---IQH--KLSVSGITMLSLSPGPEPPFVAVYVPEKKGAPASVRIYKYPEEGQHQPVANKSF---------------- 215 (566)
T ss_pred cc---eee--eeeccceeeEEecCCCCCceEEEEccCCCCCCcEEEEeccccccccchhhhccc----------------
Confidence 22 222 2356678888888853 23332 34455677776542222111111000
Q ss_pred CceeEEeeccccccccceeEEeecCCceEEEEEeeeeeecceeeecCCCCCCCeEEEEEcCCCCEEEEEeCCCcEEEEEC
Q 003579 374 KPVIAFDCAEIRERDWCNVVTCHMDTAQAYVWRLQNFVLGEHILRPCPENPTAVKACTISACGNFAVLGTAGGWIERFNL 453 (809)
Q Consensus 374 ~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~v~~v~~s~~g~~l~~g~~~g~i~i~~~ 453 (809)
....-..+.|.+-|+-|++
T Consensus 216 -------------------------------------------------Fkadkvqm~WN~~gt~LLv------------ 234 (566)
T KOG2315|consen 216 -------------------------------------------------FKADKVQMKWNKLGTALLV------------ 234 (566)
T ss_pred -------------------------------------------------cccceeEEEeccCCceEEE------------
Confidence 0011111222222221111
Q ss_pred CCCceeeeeeCcccccccCccccEEEEEEcCCCCEEEEEeCcCeEEEEECCCCceeeeeecCCCeEEEEEeeCCCEEEEE
Q 003579 454 QSGISRGSYLDMSERSNYAHNGEVVGVACDSTNTLMISAGYHGDIKVWDFKGRDLKSRWEVGCSLVKIVYHRVNGLLATV 533 (809)
Q Consensus 454 ~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~i~~~~~s~~~~~la~~ 533 (809)
+....++..|+ +--...++++.+++.....-.+...++|.++.|+++++-++++
T Consensus 235 -----------------------LastdVDktn~---SYYGEq~Lyll~t~g~s~~V~L~k~GPVhdv~W~~s~~EF~Vv 288 (566)
T KOG2315|consen 235 -----------------------LASTDVDKTNA---SYYGEQTLYLLATQGESVSVPLLKEGPVHDVTWSPSGREFAVV 288 (566)
T ss_pred -----------------------EEEEeecCCCc---cccccceEEEEEecCceEEEecCCCCCceEEEECCCCCEEEEE
Confidence 01111222221 1123456888888866666667777999999999999866654
Q ss_pred --eCCCeEEEEEcCCCeEEEEEecCCCCeeeEEECCCCCEEEEEeC---CCeEEEEEcCCccEEEEeeeCcceEEEEEcC
Q 003579 534 --ADDLVIRLFDVVALRMVRKFEGHTDRITDFCFSEDGKWLLSSGM---DGSLRIWDVILARQIDAIHVDVSITALSLSP 608 (809)
Q Consensus 534 --~~d~~I~v~d~~~~~~~~~~~~h~~~I~~l~fspdg~~l~s~s~---D~~I~vwd~~~~~~i~~~~~~~~v~~l~~sp 608 (809)
..-..+.|||++ ++++..| ..++=+++-|+|.|++|+.++- -|.|-|||+.+.+++..+.... .+-+.|+|
T Consensus 289 yGfMPAkvtifnlr-~~~v~df--~egpRN~~~fnp~g~ii~lAGFGNL~G~mEvwDv~n~K~i~~~~a~~-tt~~eW~P 364 (566)
T KOG2315|consen 289 YGFMPAKVTIFNLR-GKPVFDF--PEGPRNTAFFNPHGNIILLAGFGNLPGDMEVWDVPNRKLIAKFKAAN-TTVFEWSP 364 (566)
T ss_pred EecccceEEEEcCC-CCEeEeC--CCCCccceEECCCCCEEEEeecCCCCCceEEEeccchhhccccccCC-ceEEEEcC
Confidence 456789999987 4455544 4577789999999999998884 4789999999999988887543 56689999
Q ss_pred CCCeEEEEEeC-----CCeEEEeecC
Q 003579 609 NMDVLATAHVD-----QNGVYLWVNR 629 (809)
Q Consensus 609 dg~~lat~~~d-----~~~i~lW~~~ 629 (809)
||++++|+... +++++||+..
T Consensus 365 dGe~flTATTaPRlrvdNg~Kiwhyt 390 (566)
T KOG2315|consen 365 DGEYFLTATTAPRLRVDNGIKIWHYT 390 (566)
T ss_pred CCcEEEEEeccccEEecCCeEEEEec
Confidence 99999999764 3479999864
No 223
>KOG2315 consensus Predicted translation initiation factor related to eIF-3a [Translation, ribosomal structure and biogenesis]
Probab=99.63 E-value=1.2e-12 Score=133.47 Aligned_cols=372 Identities=14% Similarity=0.179 Sum_probs=236.3
Q ss_pred CCCcEEEEEcCCCccccceeeeEEcC--CccccEEEEeCCCCCCEEEEEeCCCeEEEEeCCCCceEEEEcCCCCCEEEEE
Q 003579 111 IDGNMFIWAFKGIEENLAPVGHVKLD--DKFTPTCIMHPDTYLNKVIVGSQEGSLQLWNISTKKKLYEFKGWGSSISSCV 188 (809)
Q Consensus 111 ~dg~i~vWd~~~~~~~~~~~~~~~~~--~~~~~~~~~~p~~~~~~l~~~~~dg~i~lwd~~~~~~~~~~~~~~~~I~~l~ 188 (809)
..-.+.+|........ ..++... ......+++++++ + +...+.+..+.|++..+++.+.+...- .+.++.
T Consensus 9 sSe~~~l~~~~~~~~~---~~~f~~~~~~~~~~v~~~S~~G--~-lfA~~~~~~v~i~~~~~~~~~lt~~~~--~~~~L~ 80 (566)
T KOG2315|consen 9 SSEGFYLFNGPGSKDA---VTVFEQNKTSRPCNVFAYSNNG--R-LFAYSDNQVVKVFEIATLKVVLCVELK--KTYDLL 80 (566)
T ss_pred ccceeEEeccCCcccc---ccccccCCCCCcceeEEEcCCC--c-EEEEEcCCeEEEEEccCCcEEEEeccc--eeeeee
Confidence 3445778876654331 1222221 2224567788887 4 444456678999999988766666543 889999
Q ss_pred EcCCCCEEEEE-----eC-----CCeEEEEEeeCCeEEEEEeccCCCcEEEEEEecCCCCEEEEEcCCCcEEEEECCCce
Q 003579 189 SSPALDVVAVG-----CS-----DGKIHVHNVRYDEELVTFTHSMRGAVTALAFSSDGQPLLASGASSGVISIWNLEKRR 258 (809)
Q Consensus 189 ~sp~~~~la~g-----~~-----dg~i~iwd~~~~~~~~~~~~~~~~~V~~l~fs~dg~~~lasg~~dg~I~iwdl~~~~ 258 (809)
|||.+.+|.+= .. .-.+.+|+++++.....+....+.. .++.|+.|.. |+.--..+.+.+|++.+.+
T Consensus 81 fSP~g~yL~T~e~~~i~~~~~~~~pn~~v~~vet~~~~s~~q~k~Q~~-W~~qfs~dEs--l~arlv~nev~f~~~~~f~ 157 (566)
T KOG2315|consen 81 FSPKGNYLLTWEPWAIYGPKNASNPNVLVYNVETGVQRSQIQKKMQNG-WVPQFSIDES--LAARLVSNEVQFYDLGSFK 157 (566)
T ss_pred ecccccccccccccccccCCCCCCCceeeeeeccceehhheehhhhcC-cccccccchh--hhhhhhcceEEEEecCCcc
Confidence 99999998762 11 2357899999977766666543333 6999999986 4444456789999998854
Q ss_pred eeeeeecccccceEEEEEecC-CC-EEEE-----EcCCCcEEEEEeeCCCCCceeEEeccCCCCCCeeEEEecCCCEEE-
Q 003579 259 LQSVIREAHDNAIISLHFFAN-EP-VLMS-----ASADNSIKMWIFDTTDGDPRLLRFRSGHSAPPLCIRFYANGRHIL- 330 (809)
Q Consensus 259 ~~~~~~~~h~~~V~~l~~~~~-~~-~l~s-----~s~d~~i~vw~~~~~~~~~~~~~~~~~h~~~v~~i~~~~~~~~l~- 330 (809)
....- -|...|+.+.++|. .+ .+++ .|.-..+++|.+.... ....+....-....=..+.|.+-|.-|+
T Consensus 158 ~~~~k--l~~~~i~~f~lSpgp~~~~vAvyvPe~kGaPa~vri~~~~~~~-~~~~~a~ksFFkadkvqm~WN~~gt~LLv 234 (566)
T KOG2315|consen 158 TIQHK--LSVSGITMLSLSPGPEPPFVAVYVPEKKGAPASVRIYKYPEEG-QHQPVANKSFFKADKVQMKWNKLGTALLV 234 (566)
T ss_pred ceeee--eeccceeeEEecCCCCCceEEEEccCCCCCCcEEEEecccccc-ccchhhhccccccceeEEEeccCCceEEE
Confidence 44333 37888999999998 33 3332 3455678888665221 1111111111122223455555443222
Q ss_pred EEECCCCEEEEEeeecccceecchhhHHHHHhhccchhhhhccCceeEEeeccccccccceeEEeecCCceEEEEEeeee
Q 003579 331 SAGQDRAFRLFSVIQDQQSRELSQRHVAKRARKLKMKEEELKLKPVIAFDCAEIRERDWCNVVTCHMDTAQAYVWRLQNF 410 (809)
Q Consensus 331 s~~~dg~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~ 410 (809)
.++.| +...
T Consensus 235 Lastd-------VDkt---------------------------------------------------------------- 243 (566)
T KOG2315|consen 235 LASTD-------VDKT---------------------------------------------------------------- 243 (566)
T ss_pred EEEEe-------ecCC----------------------------------------------------------------
Confidence 11111 1000
Q ss_pred eecceeeecCCCCCCCeEEEEEcCCCCEEEEEeCCCcEEEEECCCCceeeeeeCcccccccCccccEEEEEEcCCCCEEE
Q 003579 411 VLGEHILRPCPENPTAVKACTISACGNFAVLGTAGGWIERFNLQSGISRGSYLDMSERSNYAHNGEVVGVACDSTNTLMI 490 (809)
Q Consensus 411 ~~~~~~~~~~~~~~~~v~~v~~s~~g~~l~~g~~~g~i~i~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~l~ 490 (809)
+ .+=+....+++++++....+..+ ...++|.++.|+|+++-++
T Consensus 244 -------------------------n---~SYYGEq~Lyll~t~g~s~~V~L---------~k~GPVhdv~W~~s~~EF~ 286 (566)
T KOG2315|consen 244 -------------------------N---ASYYGEQTLYLLATQGESVSVPL---------LKEGPVHDVTWSPSGREFA 286 (566)
T ss_pred -------------------------C---ccccccceEEEEEecCceEEEec---------CCCCCceEEEECCCCCEEE
Confidence 0 00012234555555522222222 4578999999999997665
Q ss_pred EEe--CcCeEEEEECCCCceeeeeecCCCeEEEEEeeCCCEEEEEeCC---CeEEEEEcCCCeEEEEEecCCCCeeeEEE
Q 003579 491 SAG--YHGDIKVWDFKGRDLKSRWEVGCSLVKIVYHRVNGLLATVADD---LVIRLFDVVALRMVRKFEGHTDRITDFCF 565 (809)
Q Consensus 491 s~~--~dg~i~iwd~~~~~~~~~~~~~~~i~~~~~s~~~~~la~~~~d---~~I~v~d~~~~~~~~~~~~h~~~I~~l~f 565 (809)
++. .-.++.|+|++. .++..+ ..++-+++-|+|.|++++.++-+ |.+.|||+.+.+++..+.... -+-+.|
T Consensus 287 VvyGfMPAkvtifnlr~-~~v~df-~egpRN~~~fnp~g~ii~lAGFGNL~G~mEvwDv~n~K~i~~~~a~~--tt~~eW 362 (566)
T KOG2315|consen 287 VVYGFMPAKVTIFNLRG-KPVFDF-PEGPRNTAFFNPHGNIILLAGFGNLPGDMEVWDVPNRKLIAKFKAAN--TTVFEW 362 (566)
T ss_pred EEEecccceEEEEcCCC-CEeEeC-CCCCccceEECCCCCEEEEeecCCCCCceEEEeccchhhccccccCC--ceEEEE
Confidence 543 567899999764 333332 23677889999999999887764 899999999999998887544 345799
Q ss_pred CCCCCEEEEEeC------CCeEEEEEcCCccEEEEeeeCcceEEEEEcCC
Q 003579 566 SEDGKWLLSSGM------DGSLRIWDVILARQIDAIHVDVSITALSLSPN 609 (809)
Q Consensus 566 spdg~~l~s~s~------D~~I~vwd~~~~~~i~~~~~~~~v~~l~~spd 609 (809)
+|||+|++|++. |+.++||++. |..+......+....+.|-|-
T Consensus 363 ~PdGe~flTATTaPRlrvdNg~Kiwhyt-G~~l~~~~f~sEL~qv~W~P~ 411 (566)
T KOG2315|consen 363 SPDGEYFLTATTAPRLRVDNGIKIWHYT-GSLLHEKMFKSELLQVEWRPF 411 (566)
T ss_pred cCCCcEEEEEeccccEEecCCeEEEEec-CceeehhhhhHhHhheeeeec
Confidence 999999998874 6789999975 777766655556777788763
No 224
>KOG0290 consensus Conserved WD40 repeat-containing protein AN11 [Function unknown]
Probab=99.63 E-value=1.3e-13 Score=128.51 Aligned_cols=279 Identities=11% Similarity=0.136 Sum_probs=197.6
Q ss_pred eeEecCCcceEEEEc----CCeEEEEEEc----CCeEEEEEcC--ccEEEEec-CCCCCCcEEEEEeCCe------EEEE
Q 003579 10 IGYITSSVPFSVQRL----GTENFVTVSV----GKAFHIYNCA--KLNLVLVG-PQLPKKIRALASYRDY------TFAA 72 (809)
Q Consensus 10 ~g~vs~~v~~~~~~~----~~~~~i~~~~----~~~i~iwd~~--~~~~~~~~-~~~~~~I~~la~~~~~------~~~a 72 (809)
.+|-+.-.+|++... .+..++.++. .+.|+|--++ +++++... -.|+-+++.+.|.|+. +++.
T Consensus 39 y~Y~ap~~lya~~Ws~~~~~~~rla~gS~~Ee~~Nkvqiv~ld~~s~e~~~~a~fd~~YP~tK~~wiPd~~g~~pdlLAT 118 (364)
T KOG0290|consen 39 YTYNAPWPLYAMNWSVRPDKKFRLAVGSFIEEYNNKVQIVQLDEDSGELVEDANFDHPYPVTKLMWIPDSKGVYPDLLAT 118 (364)
T ss_pred EEecCCCceeeeccccCCCcceeEEEeeeccccCCeeEEEEEccCCCceeccCCCCCCCCccceEecCCccccCcchhhc
Confidence 344444445554432 4667777775 4567776554 35555443 4689999999999984 3445
Q ss_pred ECCeEEEEECCeeEE------EE-----ccccccEEEEEE---eCCEEEEEeCCCcEEEEEcCCCccccceeeeEEcCCc
Q 003579 73 YGNHIAVVKRAHQVA------TW-----SRHSAKVNLLLL---FGEHILSIDIDGNMFIWAFKGIEENLAPVGHVKLDDK 138 (809)
Q Consensus 73 ~g~~i~vw~~~~~~~------~~-----~~h~~~V~~l~~---~g~~l~s~~~dg~i~vWd~~~~~~~~~~~~~~~~~~~ 138 (809)
+|+.+++|+.+.+.. .+ ..+.++++++.+ +-++|.+.|-|-+..|||++++... ..-.++-.|.+
T Consensus 119 s~D~LRlWri~~ee~~~~~~~~L~~~kns~~~aPlTSFDWne~dp~~igtSSiDTTCTiWdie~~~~~-~vkTQLIAHDK 197 (364)
T KOG0290|consen 119 SSDFLRLWRIGDEESRVELQSVLNNNKNSEFCAPLTSFDWNEVDPNLIGTSSIDTTCTIWDIETGVSG-TVKTQLIAHDK 197 (364)
T ss_pred ccCeEEEEeccCcCCceehhhhhccCcccccCCcccccccccCCcceeEeecccCeEEEEEEeecccc-ceeeEEEecCc
Confidence 577799998763211 12 246778999987 5789999999999999999987321 11234555778
Q ss_pred cccEEEEeCCCCCCEEEEEeCCCeEEEEeCCCCc---eEEEEcCCCCCEEEEEEcCC-CCEEEEEeCC-CeEEEEEeeCC
Q 003579 139 FTPTCIMHPDTYLNKVIVGSQEGSLQLWNISTKK---KLYEFKGWGSSISSCVSSPA-LDVVAVGCSD-GKIHVHNVRYD 213 (809)
Q Consensus 139 ~~~~~~~~p~~~~~~l~~~~~dg~i~lwd~~~~~---~~~~~~~~~~~I~~l~~sp~-~~~la~g~~d-g~i~iwd~~~~ 213 (809)
.+..++|...+. +.+++.+.||.++++|++..+ .+++-.....+...++|++. -+++|+-..| ..|.|.|++..
T Consensus 198 EV~DIaf~~~s~-~~FASvgaDGSvRmFDLR~leHSTIIYE~p~~~~pLlRLswnkqDpnymATf~~dS~~V~iLDiR~P 276 (364)
T KOG0290|consen 198 EVYDIAFLKGSR-DVFASVGADGSVRMFDLRSLEHSTIIYEDPSPSTPLLRLSWNKQDPNYMATFAMDSNKVVILDIRVP 276 (364)
T ss_pred ceeEEEeccCcc-ceEEEecCCCcEEEEEecccccceEEecCCCCCCcceeeccCcCCchHHhhhhcCCceEEEEEecCC
Confidence 888888888554 789999999999999998754 34443443677888899874 5678876555 67999999865
Q ss_pred e-EEEEEeccCCCcEEEEEEecCCCCEEEEEcCCCcEEEEECCCcee------eeeeecccccceEEEEEecCCC-EEEE
Q 003579 214 E-ELVTFTHSMRGAVTALAFSSDGQPLLASGASSGVISIWNLEKRRL------QSVIREAHDNAIISLHFFANEP-VLMS 285 (809)
Q Consensus 214 ~-~~~~~~~~~~~~V~~l~fs~dg~~~lasg~~dg~I~iwdl~~~~~------~~~~~~~h~~~V~~l~~~~~~~-~l~s 285 (809)
. .+.++..| ++.|..++|.|.....+++++.|..+.+||+...-. +... .-.+.|+.+.|++..+ .++.
T Consensus 277 ~tpva~L~~H-~a~VNgIaWaPhS~~hictaGDD~qaliWDl~q~~~~~~~dPilay--~a~~EVNqi~Ws~~~~Dwiai 353 (364)
T KOG0290|consen 277 CTPVARLRNH-QASVNGIAWAPHSSSHICTAGDDCQALIWDLQQMPRENGEDPILAY--TAGGEVNQIQWSSSQPDWIAI 353 (364)
T ss_pred CcceehhhcC-cccccceEecCCCCceeeecCCcceEEEEecccccccCCCCchhhh--hccceeeeeeecccCCCEEEE
Confidence 4 56667665 899999999999888999999999999999976422 1111 2457899999997554 5655
Q ss_pred EcCCCcEEE
Q 003579 286 ASADNSIKM 294 (809)
Q Consensus 286 ~s~d~~i~v 294 (809)
+. ++.+.+
T Consensus 354 ~~-~kklei 361 (364)
T KOG0290|consen 354 CF-GKKLEI 361 (364)
T ss_pred Ee-cCeeeE
Confidence 54 444443
No 225
>KOG3881 consensus Uncharacterized conserved protein [Function unknown]
Probab=99.61 E-value=3.5e-14 Score=137.96 Aligned_cols=295 Identities=18% Similarity=0.265 Sum_probs=202.1
Q ss_pred CEEEEEeCCCeEEEEeCCCCce---------EEEEcCCCCCEEEEEEcCCCC--EEEEEeCCCeEEEEEeeCCeEEEEE-
Q 003579 152 NKVIVGSQEGSLQLWNISTKKK---------LYEFKGWGSSISSCVSSPALD--VVAVGCSDGKIHVHNVRYDEELVTF- 219 (809)
Q Consensus 152 ~~l~~~~~dg~i~lwd~~~~~~---------~~~~~~~~~~I~~l~~sp~~~--~la~g~~dg~i~iwd~~~~~~~~~~- 219 (809)
..+.+|..-|.++--.+..+.. +.........|++++|.-+++ .+...+.+..+..+.+..+......
T Consensus 17 ~~~~Vg~~tG~lkgi~~~~~t~~~~~~nls~~~s~~~~~~ris~l~~~~d~~tevl~~r~~~~~~~~~~~~E~~~~s~~~ 96 (412)
T KOG3881|consen 17 MPLYVGTHTGQLKGIYLKRNTVISEDENLSALNSGVDELDRISSLLFGVDGETEVLNARSADDDLPKFVIEEFEISSSLD 96 (412)
T ss_pred cceEEeccccccccceEeeccccccchhhhhhhcccchhhhhhhheeecCCceeEeeccccCcccccccccCCccccccc
Confidence 4566666666554333322221 111122346678888876553 3333335666777766655544442
Q ss_pred ----eccCCCcEEEEEEecCCCCEEEEEcCCCcEEEEECCCce----eeeeeecccccceEEEEEecCCC-EEEEEcCC-
Q 003579 220 ----THSMRGAVTALAFSSDGQPLLASGASSGVISIWNLEKRR----LQSVIREAHDNAIISLHFFANEP-VLMSASAD- 289 (809)
Q Consensus 220 ----~~~~~~~V~~l~fs~dg~~~lasg~~dg~I~iwdl~~~~----~~~~~~~~h~~~V~~l~~~~~~~-~l~s~s~d- 289 (809)
.....++|..++.. || .|++|-.+|.+.+|..+.+. .+..+. -..++..+.-.+..+ ++++||..
T Consensus 97 ~~~~~~l~~~~I~gl~~~-dg--~Litc~~sG~l~~~~~k~~d~hss~l~~la--~g~g~~~~r~~~~~p~Iva~GGke~ 171 (412)
T KOG3881|consen 97 DAKTVSLGTKSIKGLKLA-DG--TLITCVSSGNLQVRHDKSGDLHSSKLIKLA--TGPGLYDVRQTDTDPYIVATGGKEN 171 (412)
T ss_pred cccccccccccccchhhc-CC--EEEEEecCCcEEEEeccCCccccccceeee--cCCceeeeccCCCCCceEecCchhc
Confidence 11124567777665 44 57788889999999988542 222222 235566666666655 45558888
Q ss_pred -CcEEEEEeeCCCCCceeEEec---cCC--CCCCeeEEEecC--CCEEEEEECCCCEEEEEeeecccceecchhhHHHHH
Q 003579 290 -NSIKMWIFDTTDGDPRLLRFR---SGH--SAPPLCIRFYAN--GRHILSAGQDRAFRLFSVIQDQQSRELSQRHVAKRA 361 (809)
Q Consensus 290 -~~i~vw~~~~~~~~~~~~~~~---~~h--~~~v~~i~~~~~--~~~l~s~~~dg~i~~wd~~~~~~~~~~~~~~~~~~~ 361 (809)
+.+++||+......++-.... -+- .-.++.+.|.+. ...|++++.-+.+++||.+.++.
T Consensus 172 ~n~lkiwdle~~~qiw~aKNvpnD~L~LrVPvW~tdi~Fl~g~~~~~fat~T~~hqvR~YDt~~qRR------------- 238 (412)
T KOG3881|consen 172 INELKIWDLEQSKQIWSAKNVPNDRLGLRVPVWITDIRFLEGSPNYKFATITRYHQVRLYDTRHQRR------------- 238 (412)
T ss_pred ccceeeeecccceeeeeccCCCCccccceeeeeeccceecCCCCCceEEEEecceeEEEecCcccCc-------------
Confidence 899999887652111100000 011 124578889886 78999999999999999875432
Q ss_pred hhccchhhhhccCceeEEeeccccccccceeEEeecCCceEEEEEeeeeeecceeeecCCCCCCCeEEEEEcCCCCEEEE
Q 003579 362 RKLKMKEEELKLKPVIAFDCAEIRERDWCNVVTCHMDTAQAYVWRLQNFVLGEHILRPCPENPTAVKACTISACGNFAVL 441 (809)
Q Consensus 362 ~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~v~~v~~s~~g~~l~~ 441 (809)
|+.+|++ ...+++++...|+|+++++
T Consensus 239 -------------PV~~fd~-----------------------------------------~E~~is~~~l~p~gn~Iy~ 264 (412)
T KOG3881|consen 239 -------------PVAQFDF-----------------------------------------LENPISSTGLTPSGNFIYT 264 (412)
T ss_pred -------------ceeEecc-----------------------------------------ccCcceeeeecCCCcEEEE
Confidence 2333332 2378999999999999999
Q ss_pred EeCCCcEEEEECCCCceeeeeeCcccccccCccccEEEEEEcCCCCEEEEEeCcCeEEEEECCCCceeeeeecCCCeEEE
Q 003579 442 GTAGGWIERFNLQSGISRGSYLDMSERSNYAHNGEVVGVACDSTNTLMISAGYHGDIKVWDFKGRDLKSRWEVGCSLVKI 521 (809)
Q Consensus 442 g~~~g~i~i~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~i~~~ 521 (809)
|...|.+..||++.+....... .+-.+.|+++..+|..+++++||.|..|||+|+++.+++......+.++++
T Consensus 265 gn~~g~l~~FD~r~~kl~g~~~-------kg~tGsirsih~hp~~~~las~GLDRyvRIhD~ktrkll~kvYvKs~lt~i 337 (412)
T KOG3881|consen 265 GNTKGQLAKFDLRGGKLLGCGL-------KGITGSIRSIHCHPTHPVLASCGLDRYVRIHDIKTRKLLHKVYVKSRLTFI 337 (412)
T ss_pred ecccchhheecccCceeecccc-------CCccCCcceEEEcCCCceEEeeccceeEEEeecccchhhhhhhhhccccEE
Confidence 9999999999999999988743 388999999999999999999999999999999999988888877888877
Q ss_pred EEee
Q 003579 522 VYHR 525 (809)
Q Consensus 522 ~~s~ 525 (809)
.+.+
T Consensus 338 l~~~ 341 (412)
T KOG3881|consen 338 LLRD 341 (412)
T ss_pred EecC
Confidence 7754
No 226
>KOG2321 consensus WD40 repeat protein [General function prediction only]
Probab=99.61 E-value=1.4e-13 Score=139.72 Aligned_cols=271 Identities=14% Similarity=0.188 Sum_probs=198.4
Q ss_pred ccccceEEEEEecCCCEEE-EEcCCCcEEEEEeeCCCCCceeEEeccCC-CCCCeeEEEecCCCEEEEEECCCCEEEEEe
Q 003579 266 AHDNAIISLHFFANEPVLM-SASADNSIKMWIFDTTDGDPRLLRFRSGH-SAPPLCIRFYANGRHILSAGQDRAFRLFSV 343 (809)
Q Consensus 266 ~h~~~V~~l~~~~~~~~l~-s~s~d~~i~vw~~~~~~~~~~~~~~~~~h-~~~v~~i~~~~~~~~l~s~~~dg~i~~wd~ 343 (809)
.|....+.+..+|||++++ +|..--.|++||+.... ++.-... ...|.-.-.+.|-..++.--.|++|.+..-
T Consensus 49 e~p~ast~ik~s~DGqY~lAtG~YKP~ikvydlanLS-----LKFERhlDae~V~feiLsDD~SK~v~L~~DR~IefHak 123 (703)
T KOG2321|consen 49 EMPTASTRIKVSPDGQYLLATGTYKPQIKVYDLANLS-----LKFERHLDAEVVDFEILSDDYSKSVFLQNDRTIEFHAK 123 (703)
T ss_pred CCccccceeEecCCCcEEEEecccCCceEEEEcccce-----eeeeecccccceeEEEeccchhhheEeecCceeeehhh
Confidence 4677888999999999655 55567889999887542 2222222 233433334445455555556666654321
Q ss_pred eecccceecchhhHHHHHhhccchhhhhccCceeEEeeccccccccceeEEeecCCceEEEEEeeeeeecceeeecCCCC
Q 003579 344 IQDQQSRELSQRHVAKRARKLKMKEEELKLKPVIAFDCAEIRERDWCNVVTCHMDTAQAYVWRLQNFVLGEHILRPCPEN 423 (809)
Q Consensus 344 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~ 423 (809)
-. .|.-. ..
T Consensus 124 ~G--------------------------------------------------------------------~hy~~---RI 132 (703)
T KOG2321|consen 124 YG--------------------------------------------------------------------RHYRT---RI 132 (703)
T ss_pred cC--------------------------------------------------------------------eeeee---ec
Confidence 10 00000 00
Q ss_pred CCCeEEEEEcCCCCEEEEEeCCCcEEEEECCCCceeeeeeCcccccccCccccEEEEEEcCCCCEEEEEeCcCeEEEEEC
Q 003579 424 PTAVKACTISACGNFAVLGTAGGWIERFNLQSGISRGSYLDMSERSNYAHNGEVVGVACDSTNTLMISAGYHGDIKVWDF 503 (809)
Q Consensus 424 ~~~v~~v~~s~~g~~l~~g~~~g~i~i~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~l~s~~~dg~i~iwd~ 503 (809)
+..-..++++.-..-|+++++...|+.+|+..|..+..+. ...+.++++.+++...+|++|+.+|.|.+||-
T Consensus 133 P~~GRDm~y~~~scDly~~gsg~evYRlNLEqGrfL~P~~--------~~~~~lN~v~in~~hgLla~Gt~~g~VEfwDp 204 (703)
T KOG2321|consen 133 PKFGRDMKYHKPSCDLYLVGSGSEVYRLNLEQGRFLNPFE--------TDSGELNVVSINEEHGLLACGTEDGVVEFWDP 204 (703)
T ss_pred CcCCccccccCCCccEEEeecCcceEEEEccccccccccc--------cccccceeeeecCccceEEecccCceEEEecc
Confidence 1223344454444556777778889999999999988875 55689999999999999999999999999999
Q ss_pred CCCceeeeeecCC------------CeEEEEEeeCCCEEEEEeCCCeEEEEEcCCCeEEEEEe-cCCCCeeeEEECCC--
Q 003579 504 KGRDLKSRWEVGC------------SLVKIVYHRVNGLLATVADDLVIRLFDVVALRMVRKFE-GHTDRITDFCFSED-- 568 (809)
Q Consensus 504 ~~~~~~~~~~~~~------------~i~~~~~s~~~~~la~~~~d~~I~v~d~~~~~~~~~~~-~h~~~I~~l~fspd-- 568 (809)
+....+.++.... .++++.|+.+|-.+++|..+|.+.|||+++.+++..-. +..-+|..+.|.+.
T Consensus 205 R~ksrv~~l~~~~~v~s~pg~~~~~svTal~F~d~gL~~aVGts~G~v~iyDLRa~~pl~~kdh~~e~pi~~l~~~~~~~ 284 (703)
T KOG2321|consen 205 RDKSRVGTLDAASSVNSHPGGDAAPSVTALKFRDDGLHVAVGTSTGSVLIYDLRASKPLLVKDHGYELPIKKLDWQDTDQ 284 (703)
T ss_pred hhhhhheeeecccccCCCccccccCcceEEEecCCceeEEeeccCCcEEEEEcccCCceeecccCCccceeeecccccCC
Confidence 9888877776543 39999999999999999999999999999988765543 33467999999775
Q ss_pred CCEEEEEeCCCeEEEEEcCCccEEEEeeeCcceEEEEEcCCCCeEEEEEeCCC
Q 003579 569 GKWLLSSGMDGSLRIWDVILARQIDAIHVDVSITALSLSPNMDVLATAHVDQN 621 (809)
Q Consensus 569 g~~l~s~s~D~~I~vwd~~~~~~i~~~~~~~~v~~l~~spdg~~lat~~~d~~ 621 (809)
+..|+|.. ...++|||-.+|+....+.....+..+++-|++-++.+|-.+..
T Consensus 285 q~~v~S~D-k~~~kiWd~~~Gk~~asiEpt~~lND~C~~p~sGm~f~Ane~~~ 336 (703)
T KOG2321|consen 285 QNKVVSMD-KRILKIWDECTGKPMASIEPTSDLNDFCFVPGSGMFFTANESSK 336 (703)
T ss_pred CceEEecc-hHHhhhcccccCCceeeccccCCcCceeeecCCceEEEecCCCc
Confidence 34555543 46799999999999999988888999999999999999887764
No 227
>KOG1272 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification]
Probab=99.61 E-value=2.1e-15 Score=149.08 Aligned_cols=267 Identities=15% Similarity=0.201 Sum_probs=205.4
Q ss_pred CcEEEEEEecCCCCEEEEEcCCCcEEEEECCCceeeeeeecccccceEEEEEecCCCEEEEEcCCCcEEEEEeeCCCCCc
Q 003579 225 GAVTALAFSSDGQPLLASGASSGVISIWNLEKRRLQSVIREAHDNAIISLHFFANEPVLMSASADNSIKMWIFDTTDGDP 304 (809)
Q Consensus 225 ~~V~~l~fs~dg~~~lasg~~dg~I~iwdl~~~~~~~~~~~~h~~~V~~l~~~~~~~~l~s~s~d~~i~vw~~~~~~~~~ 304 (809)
.....+.++.+|+ +|+.|+..|.|..+|..++++...+. -...|..+.|..+..+++++- .+.+.|||- ..
T Consensus 130 FGPY~~~ytrnGr-hlllgGrKGHlAa~Dw~t~~L~~Ei~--v~Etv~Dv~~LHneq~~AVAQ-K~y~yvYD~--~G--- 200 (545)
T KOG1272|consen 130 FGPYHLDYTRNGR-HLLLGGRKGHLAAFDWVTKKLHFEIN--VMETVRDVTFLHNEQFFAVAQ-KKYVYVYDN--NG--- 200 (545)
T ss_pred cCCeeeeecCCcc-EEEecCCccceeeeecccceeeeeee--hhhhhhhhhhhcchHHHHhhh-hceEEEecC--CC---
Confidence 3567899999999 78888999999999999999988876 567799999999988887765 466788843 22
Q ss_pred eeEEeccCCCCCCeeEEEecCCCEEEEEECCCCEEEEEeeecccceecchhhHHHHHhhccchhhhhccCceeEEeeccc
Q 003579 305 RLLRFRSGHSAPPLCIRFYANGRHILSAGQDRAFRLFSVIQDQQSRELSQRHVAKRARKLKMKEEELKLKPVIAFDCAEI 384 (809)
Q Consensus 305 ~~~~~~~~h~~~v~~i~~~~~~~~l~s~~~dg~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~ 384 (809)
..+..+..| ..|..+.|.|---.|++++..|.++.-|+..++...++..+
T Consensus 201 tElHClk~~-~~v~rLeFLPyHfLL~~~~~~G~L~Y~DVS~GklVa~~~t~----------------------------- 250 (545)
T KOG1272|consen 201 TELHCLKRH-IRVARLEFLPYHFLLVAASEAGFLKYQDVSTGKLVASIRTG----------------------------- 250 (545)
T ss_pred cEEeehhhc-CchhhhcccchhheeeecccCCceEEEeechhhhhHHHHcc-----------------------------
Confidence 344555444 45899999998878889999999999999888776655332
Q ss_pred cccccceeEEeecCCceEEEEEeeeeeecceeeecCCCCCCCeEEEEEcCCCCEEEEEeCCCcEEEEECCCCceeeeeeC
Q 003579 385 RERDWCNVVTCHMDTAQAYVWRLQNFVLGEHILRPCPENPTAVKACTISACGNFAVLGTAGGWIERFNLQSGISRGSYLD 464 (809)
Q Consensus 385 ~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~v~~v~~s~~g~~l~~g~~~g~i~i~~~~~~~~~~~~~~ 464 (809)
.+.+..++-.|-.-.+-+|..+|+|.+|...+...+..+.
T Consensus 251 ---------------------------------------~G~~~vm~qNP~NaVih~GhsnGtVSlWSP~skePLvKiL- 290 (545)
T KOG1272|consen 251 ---------------------------------------AGRTDVMKQNPYNAVIHLGHSNGTVSLWSPNSKEPLVKIL- 290 (545)
T ss_pred ---------------------------------------CCccchhhcCCccceEEEcCCCceEEecCCCCcchHHHHH-
Confidence 1566667777878888999999999999999988887765
Q ss_pred cccccccCccccEEEEEEcCCCCEEEEEeCcCeEEEEECCCCceeeeeecCCCeEEEEEeeCCCEEEEEeCCCeEEEEE-
Q 003579 465 MSERSNYAHNGEVVGVACDSTNTLMISAGYHGDIKVWDFKGRDLKSRWEVGCSLVKIVYHRVNGLLATVADDLVIRLFD- 543 (809)
Q Consensus 465 ~~~~~~~~h~~~v~~l~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~i~~~~~s~~~~~la~~~~d~~I~v~d- 543 (809)
.|.++|.+++++++|++++|+|.|..++|||++.-..+.++....+...+++|..| +||.+ ....+.||.
T Consensus 291 -------cH~g~V~siAv~~~G~YMaTtG~Dr~~kIWDlR~~~ql~t~~tp~~a~~ls~Sqkg-lLA~~-~G~~v~iw~d 361 (545)
T KOG1272|consen 291 -------CHRGPVSSIAVDRGGRYMATTGLDRKVKIWDLRNFYQLHTYRTPHPASNLSLSQKG-LLALS-YGDHVQIWKD 361 (545)
T ss_pred -------hcCCCcceEEECCCCcEEeecccccceeEeeeccccccceeecCCCcccccccccc-ceeee-cCCeeeeehh
Confidence 89999999999999999999999999999999998888877777788888888644 44444 445788883
Q ss_pred cCCCe--EEEEEecC--CCCeeeEEECCCCCEEEEEeCCC
Q 003579 544 VVALR--MVRKFEGH--TDRITDFCFSEDGKWLLSSGMDG 579 (809)
Q Consensus 544 ~~~~~--~~~~~~~h--~~~I~~l~fspdg~~l~s~s~D~ 579 (809)
.-.+. .-..+..| .+.|.++.|.|-...|-.|-.-|
T Consensus 362 ~~~~s~~~~~pYm~H~~~~~V~~l~FcP~EDvLGIGH~~G 401 (545)
T KOG1272|consen 362 ALKGSGHGETPYMNHRCGGPVEDLRFCPYEDVLGIGHAGG 401 (545)
T ss_pred hhcCCCCCCcchhhhccCcccccceeccHHHeeeccccCC
Confidence 22211 11111123 35788889988666665554444
No 228
>KOG2394 consensus WD40 protein DMR-N9 [General function prediction only]
Probab=99.61 E-value=2.9e-14 Score=143.66 Aligned_cols=239 Identities=17% Similarity=0.334 Sum_probs=173.8
Q ss_pred eCCEEEEEeCCCcEEEEEcCCCccccceeeeEEcCCccccEEEE-----eCCCCCCEEEEEeCCCeEEEEeCCCCceEEE
Q 003579 102 FGEHILSIDIDGNMFIWAFKGIEENLAPVGHVKLDDKFTPTCIM-----HPDTYLNKVIVGSQEGSLQLWNISTKKKLYE 176 (809)
Q Consensus 102 ~g~~l~s~~~dg~i~vWd~~~~~~~~~~~~~~~~~~~~~~~~~~-----~p~~~~~~l~~~~~dg~i~lwd~~~~~~~~~ 176 (809)
.|++|+--- ...+.+|+...+.....++....+.......-.| .|.+ --+++|-..|.+++.|....+....
T Consensus 134 ~gd~lcFnv-g~~lyv~~~~g~~~~~~pi~k~~y~gt~P~cHdfn~~~a~~~g--~dllIGf~tGqvq~idp~~~~~skl 210 (636)
T KOG2394|consen 134 KGDRLCFNV-GRELYVYSYRGAADLSKPIDKREYKGTSPTCHDFNSFTATPKG--LDLLIGFTTGQVQLIDPINFEVSKL 210 (636)
T ss_pred CCCEEEEec-CCeEEEEEccCcchhccchhhhcccCCCCceecccccccCCCC--cceEEeeccCceEEecchhhHHHHh
Confidence 377777653 5569999988654433334333332221111112 2333 3588888889999998765332222
Q ss_pred Ec----CCCCCEEEEEEcCCC-CEEEEEeCCCeEEEEEeeC--------------C--------------eEEEEEeccC
Q 003579 177 FK----GWGSSISSCVSSPAL-DVVAVGCSDGKIHVHNVRY--------------D--------------EELVTFTHSM 223 (809)
Q Consensus 177 ~~----~~~~~I~~l~~sp~~-~~la~g~~dg~i~iwd~~~--------------~--------------~~~~~~~~~~ 223 (809)
|. -....|+|+.|-|.+ ..++++..+|.+.+||... + .++..+...
T Consensus 211 fne~r~i~ktsvT~ikWvpg~~~~Fl~a~~sGnlyly~~~~~~~~t~p~~~~~k~~~~f~i~t~ksk~~rNPv~~w~~~- 289 (636)
T KOG2394|consen 211 FNEERLINKSSVTCIKWVPGSDSLFLVAHASGNLYLYDKEIVCGATAPSYQALKDGDQFAILTSKSKKTRNPVARWHIG- 289 (636)
T ss_pred hhhcccccccceEEEEEEeCCCceEEEEEecCceEEeeccccccCCCCcccccCCCCeeEEeeeeccccCCccceeEec-
Confidence 21 124789999999954 4666778889999997531 1 112222222
Q ss_pred CCcEEEEEEecCCCCEEEEEcCCCcEEEEECCCceeeeeeecccccceEEEEEecCCCEEEEEcCCCcEEEEEeeCCCCC
Q 003579 224 RGAVTALAFSSDGQPLLASGASSGVISIWNLEKRRLQSVIREAHDNAIISLHFFANEPVLMSASADNSIKMWIFDTTDGD 303 (809)
Q Consensus 224 ~~~V~~l~fs~dg~~~lasg~~dg~I~iwdl~~~~~~~~~~~~h~~~V~~l~~~~~~~~l~s~s~d~~i~vw~~~~~~~~ 303 (809)
.+.|...+|+|||+ +||+.+.||.++|+|..+.+++..++ ..-+...|++|+|||+++++|+.|--|.||.+...
T Consensus 290 ~g~in~f~FS~DG~-~LA~VSqDGfLRvF~fdt~eLlg~mk-SYFGGLLCvcWSPDGKyIvtGGEDDLVtVwSf~er--- 364 (636)
T KOG2394|consen 290 EGSINEFAFSPDGK-YLATVSQDGFLRIFDFDTQELLGVMK-SYFGGLLCVCWSPDGKYIVTGGEDDLVTVWSFEER--- 364 (636)
T ss_pred cccccceeEcCCCc-eEEEEecCceEEEeeccHHHHHHHHH-hhccceEEEEEcCCccEEEecCCcceEEEEEeccc---
Confidence 46789999999999 99999999999999999999998888 77889999999999999999999999999998766
Q ss_pred ceeEEeccCCCCCCeeEEEec-----------------------------------CC-------------CEEEEEECC
Q 003579 304 PRLLRFRSGHSAPPLCIRFYA-----------------------------------NG-------------RHILSAGQD 335 (809)
Q Consensus 304 ~~~~~~~~~h~~~v~~i~~~~-----------------------------------~~-------------~~l~s~~~d 335 (809)
+++..-.||...|..++|.| ++ -.+-+.+.|
T Consensus 365 -RVVARGqGHkSWVs~VaFDpytt~~ee~~~~~~~~~~~~~~~~~~~~r~~~~~S~~~~~~s~~~~~~~v~YRfGSVGqD 443 (636)
T KOG2394|consen 365 -RVVARGQGHKSWVSVVAFDPYTTSTEEWNNFSGMDSTFSDVAHDFEIRANGTGSAEGCPLSSFNRINSVTYRFGSVGQD 443 (636)
T ss_pred -eEEEeccccccceeeEeecccccccccccccccccccccchhcccccccCCCCCcCCCcccccccccceEEEeeccccc
Confidence 78888899999999999982 01 146678899
Q ss_pred CCEEEEEeeecccce
Q 003579 336 RAFRLFSVIQDQQSR 350 (809)
Q Consensus 336 g~i~~wd~~~~~~~~ 350 (809)
..+.+||+..+....
T Consensus 444 TqlcLWDlteD~L~~ 458 (636)
T KOG2394|consen 444 TQLCLWDLTEDVLVP 458 (636)
T ss_pred ceEEEEecchhhccc
Confidence 999999997665433
No 229
>KOG2394 consensus WD40 protein DMR-N9 [General function prediction only]
Probab=99.61 E-value=4.5e-14 Score=142.29 Aligned_cols=142 Identities=12% Similarity=0.180 Sum_probs=112.0
Q ss_pred CCeEEEEEcCCC-CEEEEEeCCCcEEEEECCCC--------------ceeeeeeCc------ccccccCccccEEEEEEc
Q 003579 425 TAVKACTISACG-NFAVLGTAGGWIERFNLQSG--------------ISRGSYLDM------SERSNYAHNGEVVGVACD 483 (809)
Q Consensus 425 ~~v~~v~~s~~g-~~l~~g~~~g~i~i~~~~~~--------------~~~~~~~~~------~~~~~~~h~~~v~~l~~~ 483 (809)
..++++.|-|.+ ..++++..+|.+++||..-. ......... +.....--.+.|...+|+
T Consensus 220 tsvT~ikWvpg~~~~Fl~a~~sGnlyly~~~~~~~~t~p~~~~~k~~~~f~i~t~ksk~~rNPv~~w~~~~g~in~f~FS 299 (636)
T KOG2394|consen 220 SSVTCIKWVPGSDSLFLVAHASGNLYLYDKEIVCGATAPSYQALKDGDQFAILTSKSKKTRNPVARWHIGEGSINEFAFS 299 (636)
T ss_pred cceEEEEEEeCCCceEEEEEecCceEEeeccccccCCCCcccccCCCCeeEEeeeeccccCCccceeEeccccccceeEc
Confidence 678888888744 56677788898988865210 000000000 000111234578999999
Q ss_pred CCCCEEEEEeCcCeEEEEECCCCceeeeeecC-CCeEEEEEeeCCCEEEEEeCCCeEEEEEcCCCeEEEEEecCCCCeee
Q 003579 484 STNTLMISAGYHGDIKVWDFKGRDLKSRWEVG-CSLVKIVYHRVNGLLATVADDLVIRLFDVVALRMVRKFEGHTDRITD 562 (809)
Q Consensus 484 ~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~-~~i~~~~~s~~~~~la~~~~d~~I~v~d~~~~~~~~~~~~h~~~I~~ 562 (809)
|||++||+.+.||.+||+|+.+.+++...+.- +...|++|+|||++|++|++|--|.||.+..++++..-+||...|+.
T Consensus 300 ~DG~~LA~VSqDGfLRvF~fdt~eLlg~mkSYFGGLLCvcWSPDGKyIvtGGEDDLVtVwSf~erRVVARGqGHkSWVs~ 379 (636)
T KOG2394|consen 300 PDGKYLATVSQDGFLRIFDFDTQELLGVMKSYFGGLLCVCWSPDGKYIVTGGEDDLVTVWSFEERRVVARGQGHKSWVSV 379 (636)
T ss_pred CCCceEEEEecCceEEEeeccHHHHHHHHHhhccceEEEEEcCCccEEEecCCcceEEEEEeccceEEEeccccccceee
Confidence 99999999999999999999998888776544 88999999999999999999999999999999999999999999999
Q ss_pred EEEC
Q 003579 563 FCFS 566 (809)
Q Consensus 563 l~fs 566 (809)
++|.
T Consensus 380 VaFD 383 (636)
T KOG2394|consen 380 VAFD 383 (636)
T ss_pred Eeec
Confidence 9998
No 230
>KOG1523 consensus Actin-related protein Arp2/3 complex, subunit ARPC1/p41-ARC [Cytoskeleton]
Probab=99.60 E-value=3.4e-13 Score=127.73 Aligned_cols=207 Identities=13% Similarity=0.159 Sum_probs=163.7
Q ss_pred CccccEEEEeCCCCCCEEEEEeCCCeEEEEeCCCC---ceEEEEcCCCCCEEEEEEcCCCCEEEEEeCCCeEEEEEeeCC
Q 003579 137 DKFTPTCIMHPDTYLNKVIVGSQEGSLQLWNISTK---KKLYEFKGWGSSISSCVSSPALDVVAVGCSDGKIHVHNVRYD 213 (809)
Q Consensus 137 ~~~~~~~~~~p~~~~~~l~~~~~dg~i~lwd~~~~---~~~~~~~~~~~~I~~l~~sp~~~~la~g~~dg~i~iwd~~~~ 213 (809)
...+...+++++. ..++++.....|.||..... +..++++.|...|+++.|+|..+.|++++.|..-++|....+
T Consensus 10 ~~pitchAwn~dr--t~iAv~~~~~evhiy~~~~~~~w~~~htls~Hd~~vtgvdWap~snrIvtcs~drnayVw~~~~~ 87 (361)
T KOG1523|consen 10 LEPITCHAWNSDR--TQIAVSPNNHEVHIYSMLGADLWEPAHTLSEHDKIVTGVDWAPKSNRIVTCSHDRNAYVWTQPSG 87 (361)
T ss_pred cCceeeeeecCCC--ceEEeccCCceEEEEEecCCCCceeceehhhhCcceeEEeecCCCCceeEccCCCCccccccCCC
Confidence 4455667788888 88999999999999987654 578999999999999999999999999999999999998433
Q ss_pred -e--EEEEEeccCCCcEEEEEEecCCCCEEEEEcCCCcEEEEECCCcee---eeeeecccccceEEEEEecCCCEEEEEc
Q 003579 214 -E--ELVTFTHSMRGAVTALAFSSDGQPLLASGASSGVISIWNLEKRRL---QSVIREAHDNAIISLHFFANEPVLMSAS 287 (809)
Q Consensus 214 -~--~~~~~~~~~~~~V~~l~fs~dg~~~lasg~~dg~I~iwdl~~~~~---~~~~~~~h~~~V~~l~~~~~~~~l~s~s 287 (809)
+ +...+... ...++++.|+|.+. .+|+|+....|.||-++...- -+.++..+.+.|.++.|+|++-+|++|+
T Consensus 88 ~~WkptlvLlRi-NrAAt~V~WsP~en-kFAVgSgar~isVcy~E~ENdWWVsKhikkPirStv~sldWhpnnVLlaaGs 165 (361)
T KOG1523|consen 88 GTWKPTLVLLRI-NRAATCVKWSPKEN-KFAVGSGARLISVCYYEQENDWWVSKHIKKPIRSTVTSLDWHPNNVLLAAGS 165 (361)
T ss_pred CeeccceeEEEe-ccceeeEeecCcCc-eEEeccCccEEEEEEEecccceehhhhhCCccccceeeeeccCCcceecccc
Confidence 2 33344443 67899999999998 899999999999998765532 2223336788999999999999999999
Q ss_pred CCCcEEEEEeeCCCC--------------CceeEEeccCCCCCCeeEEEecCCCEEEEEECCCCEEEEEeeecc
Q 003579 288 ADNSIKMWIFDTTDG--------------DPRLLRFRSGHSAPPLCIRFYANGRHILSAGQDRAFRLFSVIQDQ 347 (809)
Q Consensus 288 ~d~~i~vw~~~~~~~--------------~~~~~~~~~~h~~~v~~i~~~~~~~~l~s~~~dg~i~~wd~~~~~ 347 (809)
.|+..+++..-...- ...++.......+.+..+.|+|+|..|+-.+.|.++.+-|...+.
T Consensus 166 ~D~k~rVfSayIK~Vdekpap~pWgsk~PFG~lm~E~~~~ggwvh~v~fs~sG~~lawv~Hds~v~~~da~~p~ 239 (361)
T KOG1523|consen 166 TDGKCRVFSAYIKGVDEKPAPTPWGSKMPFGQLMSEASSSGGWVHGVLFSPSGNRLAWVGHDSTVSFVDAAGPS 239 (361)
T ss_pred cCcceeEEEEeeeccccCCCCCCCccCCcHHHHHHhhccCCCceeeeEeCCCCCEeeEecCCCceEEeecCCCc
Confidence 999999986422110 012222333456789999999999999999999999998876554
No 231
>COG5354 Uncharacterized protein, contains Trp-Asp (WD) repeat [General function prediction only]
Probab=99.60 E-value=1.6e-12 Score=130.63 Aligned_cols=359 Identities=14% Similarity=0.187 Sum_probs=238.9
Q ss_pred EEEeCCCCceEEEEcCCCCCEEEEEEcCCCCEEEEEeCCCeEEEEEeeCCeEEEEEeccCCCcEEEEEEecCCCCEEEEE
Q 003579 164 QLWNISTKKKLYEFKGWGSSISSCVSSPALDVVAVGCSDGKIHVHNVRYDEELVTFTHSMRGAVTALAFSSDGQPLLASG 243 (809)
Q Consensus 164 ~lwd~~~~~~~~~~~~~~~~I~~l~~sp~~~~la~g~~dg~i~iwd~~~~~~~~~~~~~~~~~V~~l~fs~dg~~~lasg 243 (809)
.+|+..+...-..+....-++...++||.|.+|++....| |.+|.-.....+..+.+ ..|..+.|+|.++ +|.+-
T Consensus 15 ~f~~~~s~~~~~~~~~~~~p~~~~~~SP~G~~l~~~~~~~-V~~~~g~~~~~l~~~~~---~~V~~~~fSP~~k-YL~tw 89 (561)
T COG5354 15 VFWNSQSEVIHTRFESENWPVAYVSESPLGTYLFSEHAAG-VECWGGPSKAKLVRFRH---PDVKYLDFSPNEK-YLVTW 89 (561)
T ss_pred EeecCccccccccccccCcchhheeecCcchheehhhccc-eEEccccchhheeeeec---CCceecccCcccc-eeeee
Confidence 3455555544445554677899999999999999987754 89999888777777765 3699999999999 88876
Q ss_pred cCCC---------------cEEEEECCCceeeeeeecccccc--eE-EEEEecCCCEEEEEcCCCcEEEEEeeCCCCCce
Q 003579 244 ASSG---------------VISIWNLEKRRLQSVIREAHDNA--II-SLHFFANEPVLMSASADNSIKMWIFDTTDGDPR 305 (809)
Q Consensus 244 ~~dg---------------~I~iwdl~~~~~~~~~~~~h~~~--V~-~l~~~~~~~~l~s~s~d~~i~vw~~~~~~~~~~ 305 (809)
+..+ .+.+||+.++.++..+. .-..+ .. -+.|+-+..+++-.. ..++.++++ +..-...
T Consensus 90 ~~~pi~~pe~e~sp~~~~n~~~vwd~~sg~iv~sf~-~~~q~~~~Wp~~k~s~~D~y~ARvv-~~sl~i~e~-t~n~~~~ 166 (561)
T COG5354 90 SREPIIEPEIEISPFTSKNNVFVWDIASGMIVFSFN-GISQPYLGWPVLKFSIDDKYVARVV-GSSLYIHEI-TDNIEEH 166 (561)
T ss_pred ccCCccChhhccCCccccCceeEEeccCceeEeecc-ccCCcccccceeeeeecchhhhhhc-cCeEEEEec-CCccccC
Confidence 5433 49999999999998887 44433 44 678888887666543 357889876 3322212
Q ss_pred eEEeccCCCCCCeeEEEecCC--CEEEE-----EECCCCEEEEEeeecccceecchhhHHHHHhhccchhhhhccCceeE
Q 003579 306 LLRFRSGHSAPPLCIRFYANG--RHILS-----AGQDRAFRLFSVIQDQQSRELSQRHVAKRARKLKMKEEELKLKPVIA 378 (809)
Q Consensus 306 ~~~~~~~h~~~v~~i~~~~~~--~~l~s-----~~~dg~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~ 378 (809)
....+. ...+....++|.+ ..|+. .+.++.+++|.+..........
T Consensus 167 p~~~lr--~~gi~dFsisP~~n~~~la~~tPEk~~kpa~~~i~sIp~~s~l~tk~------------------------- 219 (561)
T COG5354 167 PFKNLR--PVGILDFSISPEGNHDELAYWTPEKLNKPAMVRILSIPKNSVLVTKN------------------------- 219 (561)
T ss_pred chhhcc--ccceeeEEecCCCCCceEEEEccccCCCCcEEEEEEccCCCeeeeee-------------------------
Confidence 222211 3457777888853 23332 2445566666654322211100
Q ss_pred EeeccccccccceeEEeecCCceEEEEEeeeeeecceeeecCCCCCCCeEEEEEcCCCCEEEEEe-----------CCCc
Q 003579 379 FDCAEIRERDWCNVVTCHMDTAQAYVWRLQNFVLGEHILRPCPENPTAVKACTISACGNFAVLGT-----------AGGW 447 (809)
Q Consensus 379 ~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~v~~v~~s~~g~~l~~g~-----------~~g~ 447 (809)
++. ..-..+.|.+.|+++++-. ....
T Consensus 220 -------------------------lfk------------------~~~~qLkW~~~g~~ll~l~~t~~ksnKsyfgesn 256 (561)
T COG5354 220 -------------------------LFK------------------VSGVQLKWQVLGKYLLVLVMTHTKSNKSYFGESN 256 (561)
T ss_pred -------------------------eEe------------------ecccEEEEecCCceEEEEEEEeeecccceeccce
Confidence 000 1122344555566554421 1245
Q ss_pred EEEEECCCCceeeeeeCcccccccCccccEEEEEEcCCCCEEEEEe--CcCeEEEEECCCCceeeeeecCCCeEEEEEee
Q 003579 448 IERFNLQSGISRGSYLDMSERSNYAHNGEVVGVACDSTNTLMISAG--YHGDIKVWDFKGRDLKSRWEVGCSLVKIVYHR 525 (809)
Q Consensus 448 i~i~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~l~s~~--~dg~i~iwd~~~~~~~~~~~~~~~i~~~~~s~ 525 (809)
+++++++....... ..-.++|...+|.|.++.+++++ .+..+.++|++.. +...-....-..+.|+|
T Consensus 257 Lyl~~~~e~~i~V~---------~~~~~pVhdf~W~p~S~~F~vi~g~~pa~~s~~~lr~N--l~~~~Pe~~rNT~~fsp 325 (561)
T COG5354 257 LYLLRITERSIPVE---------KDLKDPVHDFTWEPLSSRFAVISGYMPASVSVFDLRGN--LRFYFPEQKRNTIFFSP 325 (561)
T ss_pred EEEEeeccccccee---------ccccccceeeeecccCCceeEEecccccceeecccccc--eEEecCCcccccccccC
Confidence 77777774333332 14578999999999987766554 7788999998876 44444455667788999
Q ss_pred CCCEEEEEeCC---CeEEEEEcCCCeEEE-EEecCCCCeeeEEECCCCCEEEEEe------CCCeEEEEEcCCccEEEEe
Q 003579 526 VNGLLATVADD---LVIRLFDVVALRMVR-KFEGHTDRITDFCFSEDGKWLLSSG------MDGSLRIWDVILARQIDAI 595 (809)
Q Consensus 526 ~~~~la~~~~d---~~I~v~d~~~~~~~~-~~~~h~~~I~~l~fspdg~~l~s~s------~D~~I~vwd~~~~~~i~~~ 595 (809)
.++++++++-| |.|.+||......+. .+.+.. .+-+.|+|||+++.++. .|..|.+||+......
T Consensus 326 ~~r~il~agF~nl~gni~i~~~~~rf~~~~~~~~~n--~s~~~wspd~qF~~~~~ts~k~~~Dn~i~l~~v~g~~~f--- 400 (561)
T COG5354 326 HERYILFAGFDNLQGNIEIFDPAGRFKVAGAFNGLN--TSYCDWSPDGQFYDTDTTSEKLRVDNSIKLWDVYGAKVF--- 400 (561)
T ss_pred cccEEEEecCCccccceEEeccCCceEEEEEeecCC--ceEeeccCCceEEEecCCCcccccCcceEEEEecCchhh---
Confidence 99999887665 789999988765444 676544 34467999999988764 4788999998744322
Q ss_pred eeCcceEEEEEcCCCCeEEEEEeCC
Q 003579 596 HVDVSITALSLSPNMDVLATAHVDQ 620 (809)
Q Consensus 596 ~~~~~v~~l~~spdg~~lat~~~d~ 620 (809)
..+.+.|.|.|++.-|.+...
T Consensus 401 ----el~~~~W~p~~~~~ttsSs~~ 421 (561)
T COG5354 401 ----ELTNITWDPSGQYVTTSSSCP 421 (561)
T ss_pred ----hhhhccccCCcccceeeccCC
Confidence 567788999998887776654
No 232
>COG4946 Uncharacterized protein related to the periplasmic component of the Tol biopolymer transport system [Function unknown]
Probab=99.60 E-value=1.7e-10 Score=114.94 Aligned_cols=437 Identities=13% Similarity=0.127 Sum_probs=263.3
Q ss_pred EcCCccccEEEEeCCCCCCEEEEEeCCCeEEEEeCCCCceEEEEcCCCCCEEEEEEcCCCCEEEEE-------eCCCeEE
Q 003579 134 KLDDKFTPTCIMHPDTYLNKVIVGSQEGSLQLWNISTKKKLYEFKGWGSSISSCVSSPALDVVAVG-------CSDGKIH 206 (809)
Q Consensus 134 ~~~~~~~~~~~~~p~~~~~~l~~~~~dg~i~lwd~~~~~~~~~~~~~~~~I~~l~~sp~~~~la~g-------~~dg~i~ 206 (809)
.+|.-+.......|+-|-..|+..+.|- +..+++++|+..+ +..|-+-|+...|+|+|+.+|.. ...+.+.
T Consensus 33 ~~h~~cM~n~~l~PDI~GD~IiFt~~Dd-lWe~slk~g~~~r-itS~lGVvnn~kf~pdGrkvaf~rv~~~ss~~taDly 110 (668)
T COG4946 33 GFHEFCMKNYYLNPDIYGDRIIFTCCDD-LWEYSLKDGKPLR-ITSGLGVVNNPKFSPDGRKVAFSRVMLGSSLQTADLY 110 (668)
T ss_pred hhhhhhhhhhhcCCcccCcEEEEEechH-HHHhhhccCCeeE-EecccceeccccCCCCCcEEEEEEEEecCCCccccEE
Confidence 3444344444577887777777776665 5556777887765 44567889999999999988872 2235678
Q ss_pred EEEeeCCeEEEEEeccCCCcEEEEEEecCCCCEEEEEcCCCc----EEEEECCCcee-eeeeecccccceEEEEEecCCC
Q 003579 207 VHNVRYDEELVTFTHSMRGAVTALAFSSDGQPLLASGASSGV----ISIWNLEKRRL-QSVIREAHDNAIISLHFFANEP 281 (809)
Q Consensus 207 iwd~~~~~~~~~~~~~~~~~V~~l~fs~dg~~~lasg~~dg~----I~iwdl~~~~~-~~~~~~~h~~~V~~l~~~~~~~ 281 (809)
+.+.+.|+..+.---+ ..--.-.-|.|||+ ++++...-.- -.+|.+..... ... -.-++.+.+.+- ||
T Consensus 111 ~v~~e~Ge~kRiTyfG-r~fT~VaG~~~dg~-iiV~TD~~tPF~q~~~lYkv~~dg~~~e~---LnlGpathiv~~-dg- 183 (668)
T COG4946 111 VVPSEDGEAKRITYFG-RRFTRVAGWIPDGE-IIVSTDFHTPFSQWTELYKVNVDGIKTEP---LNLGPATHIVIK-DG- 183 (668)
T ss_pred EEeCCCCcEEEEEEec-cccceeeccCCCCC-EEEEeccCCCcccceeeeEEccCCceeee---ccCCceeeEEEe-CC-
Confidence 8888888754433222 22233455899998 6665542211 12222221111 111 122444455443 33
Q ss_pred EEEEEcCCC------------cEEEEEeeCCCCCceeEEeccCCCCCCeeEEEecCCCEEEEEECCCCEEEEEeeecccc
Q 003579 282 VLMSASADN------------SIKMWIFDTTDGDPRLLRFRSGHSAPPLCIRFYANGRHILSAGQDRAFRLFSVIQDQQS 349 (809)
Q Consensus 282 ~l~s~s~d~------------~i~vw~~~~~~~~~~~~~~~~~h~~~v~~i~~~~~~~~l~s~~~dg~i~~wd~~~~~~~ 349 (809)
.++.|-.-- .=++|.-.......+....+.+|-..+. .-. ++..+....||.=.+|++.-...-
T Consensus 184 ~ivigRntydLP~WK~YkGGtrGklWis~d~g~tFeK~vdl~~~vS~Pm---IV~-~RvYFlsD~eG~GnlYSvdldGkD 259 (668)
T COG4946 184 IIVIGRNTYDLPHWKGYKGGTRGKLWISSDGGKTFEKFVDLDGNVSSPM---IVG-ERVYFLSDHEGVGNLYSVDLDGKD 259 (668)
T ss_pred EEEEccCcccCcccccccCCccceEEEEecCCcceeeeeecCCCcCCce---EEc-ceEEEEecccCccceEEeccCCch
Confidence 333321111 1245543332222333334445443322 221 222223334544444444321110
Q ss_pred eecchhhHHHHHhhccchhhhhccCceeEEeecc--ccccccceeEEeecCCceEEEEEeeeeeecceeeecCCC-CCCC
Q 003579 350 RELSQRHVAKRARKLKMKEEELKLKPVIAFDCAE--IRERDWCNVVTCHMDTAQAYVWRLQNFVLGEHILRPCPE-NPTA 426 (809)
Q Consensus 350 ~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~--~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~-~~~~ 426 (809)
+.+ -+.|.--. ....|+..++.. ..+.++++|..+..+.+..+..... ....
T Consensus 260 -------lrr----------------HTnFtdYY~R~~nsDGkrIvFq--~~GdIylydP~td~lekldI~lpl~rk~k~ 314 (668)
T COG4946 260 -------LRR----------------HTNFTDYYPRNANSDGKRIVFQ--NAGDIYLYDPETDSLEKLDIGLPLDRKKKQ 314 (668)
T ss_pred -------hhh----------------cCCchhccccccCCCCcEEEEe--cCCcEEEeCCCcCcceeeecCCcccccccc
Confidence 000 00111111 122344455543 4567888888776654433331111 1111
Q ss_pred eEEE-------EEcC-CCCEEEEEeCCCcEEEEECCCCceeeeeeCcccccccCccccEEEEEEcCCCCEEEEEeCcC-e
Q 003579 427 VKAC-------TISA-CGNFAVLGTAGGWIERFNLQSGISRGSYLDMSERSNYAHNGEVVGVACDSTNTLMISAGYHG-D 497 (809)
Q Consensus 427 v~~v-------~~s~-~g~~l~~g~~~g~i~i~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~l~s~~~dg-~ 497 (809)
...+ .+++ +|++++..+ .|...+.+...+-.++ .+|.+.|.-..+..+++-++.|..|| .
T Consensus 315 ~k~~~pskyledfa~~~Gd~ia~VS-RGkaFi~~~~~~~~iq----------v~~~~~VrY~r~~~~~e~~vigt~dgD~ 383 (668)
T COG4946 315 PKFVNPSKYLEDFAVVNGDYIALVS-RGKAFIMRPWDGYSIQ----------VGKKGGVRYRRIQVDPEGDVIGTNDGDK 383 (668)
T ss_pred ccccCHHHhhhhhccCCCcEEEEEe-cCcEEEECCCCCeeEE----------cCCCCceEEEEEccCCcceEEeccCCce
Confidence 1111 1232 567776664 4566777666555444 27788898888888888899999999 8
Q ss_pred EEEEECCCCceeeeeecCCCeEEEEEeeCCCEEEEEeCCCeEEEEEcCCCeEEEEEecCCCCeeeEEECCCCCEEEEEeC
Q 003579 498 IKVWDFKGRDLKSRWEVGCSLVKIVYHRVNGLLATVADDLVIRLFDVVALRMVRKFEGHTDRITDFCFSEDGKWLLSSGM 577 (809)
Q Consensus 498 i~iwd~~~~~~~~~~~~~~~i~~~~~s~~~~~la~~~~d~~I~v~d~~~~~~~~~~~~h~~~I~~l~fspdg~~l~s~s~ 577 (809)
+-++|..+++.......-+.|.++..+++|++++++.+...+.++|+++++....=+...+-|++++|||+++|+|.+--
T Consensus 384 l~iyd~~~~e~kr~e~~lg~I~av~vs~dGK~~vvaNdr~el~vididngnv~~idkS~~~lItdf~~~~nsr~iAYafP 463 (668)
T COG4946 384 LGIYDKDGGEVKRIEKDLGNIEAVKVSPDGKKVVVANDRFELWVIDIDNGNVRLIDKSEYGLITDFDWHPNSRWIAYAFP 463 (668)
T ss_pred EEEEecCCceEEEeeCCccceEEEEEcCCCcEEEEEcCceEEEEEEecCCCeeEecccccceeEEEEEcCCceeEEEecC
Confidence 99999999887776666699999999999999999999999999999999876555556788999999999999998866
Q ss_pred CC----eEEEEEcCCccEEEEeeeCcceEEEEEcCCCCeEEEEEeC
Q 003579 578 DG----SLRIWDVILARQIDAIHVDVSITALSLSPNMDVLATAHVD 619 (809)
Q Consensus 578 D~----~I~vwd~~~~~~i~~~~~~~~v~~l~~spdg~~lat~~~d 619 (809)
+| .|+++|+..++..+.-.....=.+-+|.|||++|..-+..
T Consensus 464 ~gy~tq~Iklydm~~~Kiy~vTT~ta~DfsPaFD~d~ryLYfLs~R 509 (668)
T COG4946 464 EGYYTQSIKLYDMDGGKIYDVTTPTAYDFSPAFDPDGRYLYFLSAR 509 (668)
T ss_pred cceeeeeEEEEecCCCeEEEecCCcccccCcccCCCCcEEEEEecc
Confidence 55 6999999998887766555556778999999988776553
No 233
>KOG3881 consensus Uncharacterized conserved protein [Function unknown]
Probab=99.60 E-value=1.4e-13 Score=133.85 Aligned_cols=274 Identities=13% Similarity=0.163 Sum_probs=195.1
Q ss_pred CCcEEEEEEecCCCCEEEEEc-CCCcEEEEECCCceeeeeee-----cccccceEEEEEecCCCEEEEEcCCCcEEEEEe
Q 003579 224 RGAVTALAFSSDGQPLLASGA-SSGVISIWNLEKRRLQSVIR-----EAHDNAIISLHFFANEPVLMSASADNSIKMWIF 297 (809)
Q Consensus 224 ~~~V~~l~fs~dg~~~lasg~-~dg~I~iwdl~~~~~~~~~~-----~~h~~~V~~l~~~~~~~~l~s~s~d~~i~vw~~ 297 (809)
...|++++|..+++.-+..+. .+-.+..+......+...+. .....+|..+... |+ .|++|-.+|.+.+|..
T Consensus 55 ~~ris~l~~~~d~~tevl~~r~~~~~~~~~~~~E~~~~s~~~~~~~~~l~~~~I~gl~~~-dg-~Litc~~sG~l~~~~~ 132 (412)
T KOG3881|consen 55 LDRISSLLFGVDGETEVLNARSADDDLPKFVIEEFEISSSLDDAKTVSLGTKSIKGLKLA-DG-TLITCVSSGNLQVRHD 132 (412)
T ss_pred hhhhhhheeecCCceeEeeccccCcccccccccCCccccccccccccccccccccchhhc-CC-EEEEEecCCcEEEEec
Confidence 357889999877764444444 67777777777766555431 1345677777764 33 6888888999999987
Q ss_pred eCCCCCceeEEeccCCCCCCeeEEEecCCC-EEEEEECC--CCEEEEEeeecccceecchhhHHHHHhhccchhhhhccC
Q 003579 298 DTTDGDPRLLRFRSGHSAPPLCIRFYANGR-HILSAGQD--RAFRLFSVIQDQQSRELSQRHVAKRARKLKMKEEELKLK 374 (809)
Q Consensus 298 ~~~~~~~~~~~~~~~h~~~v~~i~~~~~~~-~l~s~~~d--g~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 374 (809)
..++.....+..+..+ .++..+.-++... .+++||.. ..+.+||+.+.+++.+
T Consensus 133 k~~d~hss~l~~la~g-~g~~~~r~~~~~p~Iva~GGke~~n~lkiwdle~~~qiw~----------------------- 188 (412)
T KOG3881|consen 133 KSGDLHSSKLIKLATG-PGLYDVRQTDTDPYIVATGGKENINELKIWDLEQSKQIWS----------------------- 188 (412)
T ss_pred cCCccccccceeeecC-CceeeeccCCCCCceEecCchhcccceeeeecccceeeee-----------------------
Confidence 6544211222222222 3455566666333 44557777 6788888765532221
Q ss_pred ceeEEeeccccccccceeEEeecCCceEEEEEeeeeeecceeeecCCCCCCCeEEEEEcCCCCEEEEEeCCCcEEEEECC
Q 003579 375 PVIAFDCAEIRERDWCNVVTCHMDTAQAYVWRLQNFVLGEHILRPCPENPTAVKACTISACGNFAVLGTAGGWIERFNLQ 454 (809)
Q Consensus 375 ~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~v~~v~~s~~g~~l~~g~~~g~i~i~~~~ 454 (809)
..+-.. ++ -+=.|-
T Consensus 189 --------------------------------aKNvpn------------------------D~-----L~LrVP----- 202 (412)
T KOG3881|consen 189 --------------------------------AKNVPN------------------------DR-----LGLRVP----- 202 (412)
T ss_pred --------------------------------ccCCCC------------------------cc-----ccceee-----
Confidence 111000 00 000111
Q ss_pred CCceeeeeeCcccccccCccccEEEEEEcCC--CCEEEEEeCcCeEEEEECCCC-ceeeeeecC-CCeEEEEEeeCCCEE
Q 003579 455 SGISRGSYLDMSERSNYAHNGEVVGVACDST--NTLMISAGYHGDIKVWDFKGR-DLKSRWEVG-CSLVKIVYHRVNGLL 530 (809)
Q Consensus 455 ~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~--~~~l~s~~~dg~i~iwd~~~~-~~~~~~~~~-~~i~~~~~s~~~~~l 530 (809)
-.++++.|-+. ...+++++.-+.+++||.+.+ +++..+... .+++++...|.++++
T Consensus 203 --------------------vW~tdi~Fl~g~~~~~fat~T~~hqvR~YDt~~qRRPV~~fd~~E~~is~~~l~p~gn~I 262 (412)
T KOG3881|consen 203 --------------------VWITDIRFLEGSPNYKFATITRYHQVRLYDTRHQRRPVAQFDFLENPISSTGLTPSGNFI 262 (412)
T ss_pred --------------------eeeccceecCCCCCceEEEEecceeEEEecCcccCcceeEeccccCcceeeeecCCCcEE
Confidence 22455666665 788999999999999999854 566777655 899999999999999
Q ss_pred EEEeCCCeEEEEEcCCCeEEEE-EecCCCCeeeEEECCCCCEEEEEeCCCeEEEEEcCCccEEEEeeeCcceEEEEEcCC
Q 003579 531 ATVADDLVIRLFDVVALRMVRK-FEGHTDRITDFCFSEDGKWLLSSGMDGSLRIWDVILARQIDAIHVDVSITALSLSPN 609 (809)
Q Consensus 531 a~~~~d~~I~v~d~~~~~~~~~-~~~h~~~I~~l~fspdg~~l~s~s~D~~I~vwd~~~~~~i~~~~~~~~v~~l~~spd 609 (809)
++|..-+.+..||+++++.... +.|..+.|+++..+|.+++|+++|.|+.|||+|+.+.+++......+.++++.+.++
T Consensus 263 y~gn~~g~l~~FD~r~~kl~g~~~kg~tGsirsih~hp~~~~las~GLDRyvRIhD~ktrkll~kvYvKs~lt~il~~~~ 342 (412)
T KOG3881|consen 263 YTGNTKGQLAKFDLRGGKLLGCGLKGITGSIRSIHCHPTHPVLASCGLDRYVRIHDIKTRKLLHKVYVKSRLTFILLRDD 342 (412)
T ss_pred EEecccchhheecccCceeeccccCCccCCcceEEEcCCCceEEeeccceeEEEeecccchhhhhhhhhccccEEEecCC
Confidence 9999999999999999998777 899999999999999999999999999999999999999888888888888888654
No 234
>PF10282 Lactonase: Lactonase, 7-bladed beta-propeller; InterPro: IPR019405 6-phosphogluconolactonases (6PGL) 3.1.1.31 from EC, which hydrolyses 6-phosphogluconolactone to 6-phosphogluconate is opne of the enzymes in the pentose phosphate pathway. Two families of structurally dissimilar 6PGLs are known to exist: the Escherichia coli (strain K12) YbhE IPR022528 from INTERPRO [] and the Pseudomonas aeruginosa DevB IPR005900 from INTERPRO [] types. This entry contains bacterial 6-phosphogluconolactonases (6PGL) YbhE-type 3.1.1.31 from EC which hydrolyse 6-phosphogluconolactone to 6-phosphogluconate. The entry also contains the fungal muconate lactonizing enzyme carboxy-cis,cis-muconate cyclase 5.5.1.5 from EC and muconate cycloisomerase 5.5.1.1 from EC, which convert cis,cis-muconates to muconolactones and vice versa as part of the microbial beta-ketoadipate pathway. Structures have been reported for the E. coli 6-phosphogluconolactonase and Neurospora crassa muconate cycloisomerase. Structures of proteins in this family have revealed a 7-bladed beta-propeller fold [].; PDB: 3SCY_A 1L0Q_A 3HFQ_B 3FGB_A 1RI6_A 3U4Y_A 3BWS_A 1JOF_H.
Probab=99.59 E-value=1e-11 Score=130.58 Aligned_cols=281 Identities=15% Similarity=0.214 Sum_probs=188.1
Q ss_pred EEEEcCC----CcEEEEEeeCCCCCceeEEeccCCCCCCeeEEEecCCCEEEEEEC----CCCEEEEEeeec-ccceecc
Q 003579 283 LMSASAD----NSIKMWIFDTTDGDPRLLRFRSGHSAPPLCIRFYANGRHILSAGQ----DRAFRLFSVIQD-QQSRELS 353 (809)
Q Consensus 283 l~s~s~d----~~i~vw~~~~~~~~~~~~~~~~~h~~~v~~i~~~~~~~~l~s~~~----dg~i~~wd~~~~-~~~~~~~ 353 (809)
++.|+.. +.|.+|.++..++....+... .-...+..++++|++++|++... ++.|..|++... .....+.
T Consensus 2 ~~vgsy~~~~~~gI~~~~~d~~~g~l~~~~~~-~~~~~Ps~l~~~~~~~~LY~~~e~~~~~g~v~~~~i~~~~g~L~~~~ 80 (345)
T PF10282_consen 2 LYVGSYTNGKGGGIYVFRFDEETGTLTLVQTV-AEGENPSWLAVSPDGRRLYVVNEGSGDSGGVSSYRIDPDTGTLTLLN 80 (345)
T ss_dssp EEEEECCSSSSTEEEEEEEETTTTEEEEEEEE-EESSSECCEEE-TTSSEEEEEETTSSTTTEEEEEEEETTTTEEEEEE
T ss_pred EEEEcCCCCCCCcEEEEEEcCCCCCceEeeee-cCCCCCceEEEEeCCCEEEEEEccccCCCCEEEEEECCCcceeEEee
Confidence 3445544 789999998777665555543 24455678999999999999877 467888877654 2221111
Q ss_pred hhhHHHHHhhccchhhhhccCceeEEeeccccccccceeEEeecCCceEEEEEeeeeeecceeeecCCCCCCCeEEEEEc
Q 003579 354 QRHVAKRARKLKMKEEELKLKPVIAFDCAEIRERDWCNVVTCHMDTAQAYVWRLQNFVLGEHILRPCPENPTAVKACTIS 433 (809)
Q Consensus 354 ~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~v~~v~~s 433 (809)
. .. ........++++
T Consensus 81 ~-------------------------------------------------------------~~----~~g~~p~~i~~~ 95 (345)
T PF10282_consen 81 S-------------------------------------------------------------VP----SGGSSPCHIAVD 95 (345)
T ss_dssp E-------------------------------------------------------------EE----ESSSCEEEEEEC
T ss_pred e-------------------------------------------------------------ec----cCCCCcEEEEEe
Confidence 0 00 012566789999
Q ss_pred CCCCEEEEEe-CCCcEEEEECCC-CceeeeeeCc-----ccccccCccccEEEEEEcCCCCEEEEEe-CcCeEEEEECCC
Q 003579 434 ACGNFAVLGT-AGGWIERFNLQS-GISRGSYLDM-----SERSNYAHNGEVVGVACDSTNTLMISAG-YHGDIKVWDFKG 505 (809)
Q Consensus 434 ~~g~~l~~g~-~~g~i~i~~~~~-~~~~~~~~~~-----~~~~~~~h~~~v~~l~~~~~~~~l~s~~-~dg~i~iwd~~~ 505 (809)
|++++++++. .+|.|.+|++.. |......... .............++.++|++++++++. ....|.+|++..
T Consensus 96 ~~g~~l~vany~~g~v~v~~l~~~g~l~~~~~~~~~~g~g~~~~rq~~~h~H~v~~~pdg~~v~v~dlG~D~v~~~~~~~ 175 (345)
T PF10282_consen 96 PDGRFLYVANYGGGSVSVFPLDDDGSLGEVVQTVRHEGSGPNPDRQEGPHPHQVVFSPDGRFVYVPDLGADRVYVYDIDD 175 (345)
T ss_dssp TTSSEEEEEETTTTEEEEEEECTTSEEEEEEEEEESEEEESSTTTTSSTCEEEEEE-TTSSEEEEEETTTTEEEEEEE-T
T ss_pred cCCCEEEEEEccCCeEEEEEccCCcccceeeeecccCCCCCcccccccccceeEEECCCCCEEEEEecCCCEEEEEEEeC
Confidence 9999998886 589999999987 4433321100 0000112235578899999999888775 345799999976
Q ss_pred Cc--eee----eeecCCCeEEEEEeeCCCEEEEEeC-CCeEEEEEcC--CCe--EEEEEecC------CCCeeeEEECCC
Q 003579 506 RD--LKS----RWEVGCSLVKIVYHRVNGLLATVAD-DLVIRLFDVV--ALR--MVRKFEGH------TDRITDFCFSED 568 (809)
Q Consensus 506 ~~--~~~----~~~~~~~i~~~~~s~~~~~la~~~~-d~~I~v~d~~--~~~--~~~~~~~h------~~~I~~l~fspd 568 (809)
.. +.. .+........++|+|+++++.+.++ ++.|.++++. +++ .+..+... ......|+++||
T Consensus 176 ~~~~l~~~~~~~~~~G~GPRh~~f~pdg~~~Yv~~e~s~~v~v~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~i~ispd 255 (345)
T PF10282_consen 176 DTGKLTPVDSIKVPPGSGPRHLAFSPDGKYAYVVNELSNTVSVFDYDPSDGSLTEIQTISTLPEGFTGENAPAEIAISPD 255 (345)
T ss_dssp TS-TEEEEEEEECSTTSSEEEEEE-TTSSEEEEEETTTTEEEEEEEETTTTEEEEEEEEESCETTSCSSSSEEEEEE-TT
T ss_pred CCceEEEeeccccccCCCCcEEEEcCCcCEEEEecCCCCcEEEEeecccCCceeEEEEeeeccccccccCCceeEEEecC
Confidence 65 422 2344588999999999998877765 7889999988 443 23333321 125778999999
Q ss_pred CCEEEEEe-CCCeEEEEEcC--CccE--EEEeeeCc-ceEEEEEcCCCCeEEEEEeCCCeEEEeecC
Q 003579 569 GKWLLSSG-MDGSLRIWDVI--LARQ--IDAIHVDV-SITALSLSPNMDVLATAHVDQNGVYLWVNR 629 (809)
Q Consensus 569 g~~l~s~s-~D~~I~vwd~~--~~~~--i~~~~~~~-~v~~l~~spdg~~lat~~~d~~~i~lW~~~ 629 (809)
|++|.++. .+.+|.+|++. +|++ +..+.... ....++++|+|++|+++..+++.|.+|++.
T Consensus 256 g~~lyvsnr~~~sI~vf~~d~~~g~l~~~~~~~~~G~~Pr~~~~s~~g~~l~Va~~~s~~v~vf~~d 322 (345)
T PF10282_consen 256 GRFLYVSNRGSNSISVFDLDPATGTLTLVQTVPTGGKFPRHFAFSPDGRYLYVANQDSNTVSVFDID 322 (345)
T ss_dssp SSEEEEEECTTTEEEEEEECTTTTTEEEEEEEEESSSSEEEEEE-TTSSEEEEEETTTTEEEEEEEE
T ss_pred CCEEEEEeccCCEEEEEEEecCCCceEEEEEEeCCCCCccEEEEeCCCCEEEEEecCCCeEEEEEEe
Confidence 99987665 56789999993 3443 44444433 389999999999999999888889999874
No 235
>PRK03629 tolB translocation protein TolB; Provisional
Probab=99.57 E-value=8.7e-13 Score=142.78 Aligned_cols=236 Identities=13% Similarity=0.146 Sum_probs=158.0
Q ss_pred eEEEEeCCCCceEEEEcCCCCCEEEEEEcCCCCEEEEEeC---CCeEEEEEeeCCeEEEEEeccCCCcEEEEEEecCCCC
Q 003579 162 SLQLWNISTKKKLYEFKGWGSSISSCVSSPALDVVAVGCS---DGKIHVHNVRYDEELVTFTHSMRGAVTALAFSSDGQP 238 (809)
Q Consensus 162 ~i~lwd~~~~~~~~~~~~~~~~I~~l~~sp~~~~la~g~~---dg~i~iwd~~~~~~~~~~~~~~~~~V~~l~fs~dg~~ 238 (809)
.|.+||...... +.+..+...+.+.+|||||+.|+..+. +..|.+|++.+++....... .+.+.+.+|+|||+.
T Consensus 180 ~l~~~d~dg~~~-~~lt~~~~~~~~p~wSPDG~~la~~s~~~g~~~i~i~dl~~G~~~~l~~~--~~~~~~~~~SPDG~~ 256 (429)
T PRK03629 180 ELRVSDYDGYNQ-FVVHRSPQPLMSPAWSPDGSKLAYVTFESGRSALVIQTLANGAVRQVASF--PRHNGAPAFSPDGSK 256 (429)
T ss_pred eEEEEcCCCCCC-EEeecCCCceeeeEEcCCCCEEEEEEecCCCcEEEEEECCCCCeEEccCC--CCCcCCeEECCCCCE
Confidence 699999865544 344456778999999999999987642 45799999988764332221 344567899999994
Q ss_pred EEEEEcCCC--cEEEEECCCceeeeeeecccccceEEEEEecCCCEEEEEcC-CCcEEEEEeeCCCCCceeEEeccCCCC
Q 003579 239 LLASGASSG--VISIWNLEKRRLQSVIREAHDNAIISLHFFANEPVLMSASA-DNSIKMWIFDTTDGDPRLLRFRSGHSA 315 (809)
Q Consensus 239 ~lasg~~dg--~I~iwdl~~~~~~~~~~~~h~~~V~~l~~~~~~~~l~s~s~-d~~i~vw~~~~~~~~~~~~~~~~~h~~ 315 (809)
++++.+.+| .|.+||+++++...... +...+....|+||++.|+.++. ++...+|.++..++..+.+ ..+..
T Consensus 257 La~~~~~~g~~~I~~~d~~tg~~~~lt~--~~~~~~~~~wSPDG~~I~f~s~~~g~~~Iy~~d~~~g~~~~l---t~~~~ 331 (429)
T PRK03629 257 LAFALSKTGSLNLYVMDLASGQIRQVTD--GRSNNTEPTWFPDSQNLAYTSDQAGRPQVYKVNINGGAPQRI---TWEGS 331 (429)
T ss_pred EEEEEcCCCCcEEEEEECCCCCEEEccC--CCCCcCceEECCCCCEEEEEeCCCCCceEEEEECCCCCeEEe---ecCCC
Confidence 554545555 59999999887654433 4456789999999998876665 4667888777655443333 22334
Q ss_pred CCeeEEEecCCCEEEEEECCC---CEEEEEeeecccceecchhhHHHHHhhccchhhhhccCceeEEeecccccccccee
Q 003579 316 PPLCIRFYANGRHILSAGQDR---AFRLFSVIQDQQSRELSQRHVAKRARKLKMKEEELKLKPVIAFDCAEIRERDWCNV 392 (809)
Q Consensus 316 ~v~~i~~~~~~~~l~s~~~dg---~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~ 392 (809)
......|+|||++|+..+.++ .+.+||+.++.. ..+
T Consensus 332 ~~~~~~~SpDG~~Ia~~~~~~g~~~I~~~dl~~g~~-~~L---------------------------------------- 370 (429)
T PRK03629 332 QNQDADVSSDGKFMVMVSSNGGQQHIAKQDLATGGV-QVL---------------------------------------- 370 (429)
T ss_pred CccCEEECCCCCEEEEEEccCCCceEEEEECCCCCe-EEe----------------------------------------
Confidence 456789999999998766542 366666543321 111
Q ss_pred EEeecCCceEEEEEeeeeeecceeeecCCCCCCCeEEEEEcCCCCEEEEEeCCCc---EEEEECCCCceeeeeeCccccc
Q 003579 393 VTCHMDTAQAYVWRLQNFVLGEHILRPCPENPTAVKACTISACGNFAVLGTAGGW---IERFNLQSGISRGSYLDMSERS 469 (809)
Q Consensus 393 ~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~v~~v~~s~~g~~l~~g~~~g~---i~i~~~~~~~~~~~~~~~~~~~ 469 (809)
.. . .......|+|||++++.++.++. +.++++. |.....+.
T Consensus 371 -------------------------t~--~--~~~~~p~~SpDG~~i~~~s~~~~~~~l~~~~~~-G~~~~~l~------ 414 (429)
T PRK03629 371 -------------------------TD--T--FLDETPSIAPNGTMVIYSSSQGMGSVLNLVSTD-GRFKARLP------ 414 (429)
T ss_pred -------------------------CC--C--CCCCCceECCCCCEEEEEEcCCCceEEEEEECC-CCCeEECc------
Confidence 00 0 11234679999999999988764 5666764 44444443
Q ss_pred ccCccccEEEEEEcC
Q 003579 470 NYAHNGEVVGVACDS 484 (809)
Q Consensus 470 ~~~h~~~v~~l~~~~ 484 (809)
.|.+.+...+|+|
T Consensus 415 --~~~~~~~~p~Wsp 427 (429)
T PRK03629 415 --ATDGQVKFPAWSP 427 (429)
T ss_pred --cCCCCcCCcccCC
Confidence 6777888888887
No 236
>KOG2321 consensus WD40 repeat protein [General function prediction only]
Probab=99.57 E-value=7.8e-13 Score=134.50 Aligned_cols=271 Identities=12% Similarity=0.198 Sum_probs=196.6
Q ss_pred cCCcceEEEEcCCeEEEEEEc-CCeEEEEEcCccEEEEecCCCCCCcEEEEEeCCe---EEEEECCeEEEEECCeeEEEE
Q 003579 14 TSSVPFSVQRLGTENFVTVSV-GKAFHIYNCAKLNLVLVGPQLPKKIRALASYRDY---TFAAYGNHIAVVKRAHQVATW 89 (809)
Q Consensus 14 s~~v~~~~~~~~~~~~i~~~~-~~~i~iwd~~~~~~~~~~~~~~~~I~~la~~~~~---~~~a~g~~i~vw~~~~~~~~~ 89 (809)
|+.+..+ +++++++++++ --.|++||+.++.+.|.-.-....|.-.-++.|. +++-....|..-.....
T Consensus 54 st~ik~s---~DGqY~lAtG~YKP~ikvydlanLSLKFERhlDae~V~feiLsDD~SK~v~L~~DR~IefHak~G~---- 126 (703)
T KOG2321|consen 54 STRIKVS---PDGQYLLATGTYKPQIKVYDLANLSLKFERHLDAEVVDFEILSDDYSKSVFLQNDRTIEFHAKYGR---- 126 (703)
T ss_pred cceeEec---CCCcEEEEecccCCceEEEEcccceeeeeecccccceeEEEeccchhhheEeecCceeeehhhcCe----
Confidence 4555555 88888888877 6689999999999999875445555555556552 22222222322211110
Q ss_pred ccccccEEEEEEe------CCEEEEEeCCCcEEEEEcCCCccccceeeeEEcCCccccEEEEeCCCCCCEEEEEeCCCeE
Q 003579 90 SRHSAKVNLLLLF------GEHILSIDIDGNMFIWAFKGIEENLAPVGHVKLDDKFTPTCIMHPDTYLNKVIVGSQEGSL 163 (809)
Q Consensus 90 ~~h~~~V~~l~~~------g~~l~s~~~dg~i~vWd~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~l~~~~~dg~i 163 (809)
.+..+|.....| .--|+.++....|.-.+++.+.. +..+....+....+-+++-. ..|++|+.+|.|
T Consensus 127 -hy~~RIP~~GRDm~y~~~scDly~~gsg~evYRlNLEqGrf----L~P~~~~~~~lN~v~in~~h--gLla~Gt~~g~V 199 (703)
T KOG2321|consen 127 -HYRTRIPKFGRDMKYHKPSCDLYLVGSGSEVYRLNLEQGRF----LNPFETDSGELNVVSINEEH--GLLACGTEDGVV 199 (703)
T ss_pred -eeeeecCcCCccccccCCCccEEEeecCcceEEEEcccccc----ccccccccccceeeeecCcc--ceEEecccCceE
Confidence 112223222211 22344555577799999999887 56666666777788888887 789999999999
Q ss_pred EEEeCCCCceEEEEc------CCCC-----CEEEEEEcCCCCEEEEEeCCCeEEEEEeeCCeEEEEEeccCCCcEEEEEE
Q 003579 164 QLWNISTKKKLYEFK------GWGS-----SISSCVSSPALDVVAVGCSDGKIHVHNVRYDEELVTFTHSMRGAVTALAF 232 (809)
Q Consensus 164 ~lwd~~~~~~~~~~~------~~~~-----~I~~l~~sp~~~~la~g~~dg~i~iwd~~~~~~~~~~~~~~~~~V~~l~f 232 (809)
..||.++...+.++. .|.+ .|+++.|+.+|-.+++|+.+|.+.|||+++.+++..-.+...-+|..+.|
T Consensus 200 EfwDpR~ksrv~~l~~~~~v~s~pg~~~~~svTal~F~d~gL~~aVGts~G~v~iyDLRa~~pl~~kdh~~e~pi~~l~~ 279 (703)
T KOG2321|consen 200 EFWDPRDKSRVGTLDAASSVNSHPGGDAAPSVTALKFRDDGLHVAVGTSTGSVLIYDLRASKPLLVKDHGYELPIKKLDW 279 (703)
T ss_pred EEecchhhhhheeeecccccCCCccccccCcceEEEecCCceeEEeeccCCcEEEEEcccCCceeecccCCccceeeecc
Confidence 999998877665553 2333 49999999999999999999999999999999998888777789999999
Q ss_pred ecCC-CCEEEEEcCCCcEEEEECCCceeeeeeecccccceEEEEEecCCCEEEEEcCCCcEEEEEeeCCC
Q 003579 233 SSDG-QPLLASGASSGVISIWNLEKRRLQSVIREAHDNAIISLHFFANEPVLMSASADNSIKMWIFDTTD 301 (809)
Q Consensus 233 s~dg-~~~lasg~~dg~I~iwdl~~~~~~~~~~~~h~~~V~~l~~~~~~~~l~s~s~d~~i~vw~~~~~~ 301 (809)
.+.+ +..+++. ....++|||-.+|+....+. ....+..+++.|++.+++++-.+..+..|-+....
T Consensus 280 ~~~~~q~~v~S~-Dk~~~kiWd~~~Gk~~asiE--pt~~lND~C~~p~sGm~f~Ane~~~m~~yyiP~LG 346 (703)
T KOG2321|consen 280 QDTDQQNKVVSM-DKRILKIWDECTGKPMASIE--PTSDLNDFCFVPGSGMFFTANESSKMHTYYIPSLG 346 (703)
T ss_pred cccCCCceEEec-chHHhhhcccccCCceeecc--ccCCcCceeeecCCceEEEecCCCcceeEEccccC
Confidence 7753 2245554 46789999999999998887 45569999999999999999888877777554443
No 237
>PF10282 Lactonase: Lactonase, 7-bladed beta-propeller; InterPro: IPR019405 6-phosphogluconolactonases (6PGL) 3.1.1.31 from EC, which hydrolyses 6-phosphogluconolactone to 6-phosphogluconate is opne of the enzymes in the pentose phosphate pathway. Two families of structurally dissimilar 6PGLs are known to exist: the Escherichia coli (strain K12) YbhE IPR022528 from INTERPRO [] and the Pseudomonas aeruginosa DevB IPR005900 from INTERPRO [] types. This entry contains bacterial 6-phosphogluconolactonases (6PGL) YbhE-type 3.1.1.31 from EC which hydrolyse 6-phosphogluconolactone to 6-phosphogluconate. The entry also contains the fungal muconate lactonizing enzyme carboxy-cis,cis-muconate cyclase 5.5.1.5 from EC and muconate cycloisomerase 5.5.1.1 from EC, which convert cis,cis-muconates to muconolactones and vice versa as part of the microbial beta-ketoadipate pathway. Structures have been reported for the E. coli 6-phosphogluconolactonase and Neurospora crassa muconate cycloisomerase. Structures of proteins in this family have revealed a 7-bladed beta-propeller fold [].; PDB: 3SCY_A 1L0Q_A 3HFQ_B 3FGB_A 1RI6_A 3U4Y_A 3BWS_A 1JOF_H.
Probab=99.57 E-value=8.8e-11 Score=123.60 Aligned_cols=306 Identities=16% Similarity=0.184 Sum_probs=199.3
Q ss_pred EEEEcCC----CcEEEEEC--CCceeeeeeecccccceEEEEEecCCCEEEEEcC----CCcEEEEEeeCCCCCceeEEe
Q 003579 240 LASGASS----GVISIWNL--EKRRLQSVIREAHDNAIISLHFFANEPVLMSASA----DNSIKMWIFDTTDGDPRLLRF 309 (809)
Q Consensus 240 lasg~~d----g~I~iwdl--~~~~~~~~~~~~h~~~V~~l~~~~~~~~l~s~s~----d~~i~vw~~~~~~~~~~~~~~ 309 (809)
+++|+.. +.|.+|++ +++++...-...-......++++|++++|.++.. ++.|..|.++...+....+..
T Consensus 2 ~~vgsy~~~~~~gI~~~~~d~~~g~l~~~~~~~~~~~Ps~l~~~~~~~~LY~~~e~~~~~g~v~~~~i~~~~g~L~~~~~ 81 (345)
T PF10282_consen 2 LYVGSYTNGKGGGIYVFRFDEETGTLTLVQTVAEGENPSWLAVSPDGRRLYVVNEGSGDSGGVSSYRIDPDTGTLTLLNS 81 (345)
T ss_dssp EEEEECCSSSSTEEEEEEEETTTTEEEEEEEEEESSSECCEEE-TTSSEEEEEETTSSTTTEEEEEEEETTTTEEEEEEE
T ss_pred EEEEcCCCCCCCcEEEEEEcCCCCCceEeeeecCCCCCceEEEEeCCCEEEEEEccccCCCCEEEEEECCCcceeEEeee
Confidence 3445544 68888887 5554433222234456778999999999998876 578999998877555555555
Q ss_pred ccCCCCCCeeEEEecCCCEEEEEE-CCCCEEEEEeeecccceecchhhHHHHHhhccchhhhhccCceeEEeeccccccc
Q 003579 310 RSGHSAPPLCIRFYANGRHILSAG-QDRAFRLFSVIQDQQSRELSQRHVAKRARKLKMKEEELKLKPVIAFDCAEIRERD 388 (809)
Q Consensus 310 ~~~h~~~v~~i~~~~~~~~l~s~~-~dg~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~ 388 (809)
.......+..++++|++++|+++. .+|++.++++...........
T Consensus 82 ~~~~g~~p~~i~~~~~g~~l~vany~~g~v~v~~l~~~g~l~~~~~---------------------------------- 127 (345)
T PF10282_consen 82 VPSGGSSPCHIAVDPDGRFLYVANYGGGSVSVFPLDDDGSLGEVVQ---------------------------------- 127 (345)
T ss_dssp EEESSSCEEEEEECTTSSEEEEEETTTTEEEEEEECTTSEEEEEEE----------------------------------
T ss_pred eccCCCCcEEEEEecCCCEEEEEEccCCeEEEEEccCCcccceeee----------------------------------
Confidence 544556678899999999999887 588999999876433222110
Q ss_pred cceeEEeecCCceEEEEEeeeeeecceeeecCCCCCCCeEEEEEcCCCCEEEEEeCC-CcEEEEECCCCc--eee--eee
Q 003579 389 WCNVVTCHMDTAQAYVWRLQNFVLGEHILRPCPENPTAVKACTISACGNFAVLGTAG-GWIERFNLQSGI--SRG--SYL 463 (809)
Q Consensus 389 ~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~v~~v~~s~~g~~l~~g~~~-g~i~i~~~~~~~--~~~--~~~ 463 (809)
++.... .-..+.........++.++|+|+++++.... ..|.+|++.... ... .+.
T Consensus 128 ---------------~~~~~g-----~g~~~~rq~~~h~H~v~~~pdg~~v~v~dlG~D~v~~~~~~~~~~~l~~~~~~~ 187 (345)
T PF10282_consen 128 ---------------TVRHEG-----SGPNPDRQEGPHPHQVVFSPDGRFVYVPDLGADRVYVYDIDDDTGKLTPVDSIK 187 (345)
T ss_dssp ---------------EEESEE-----EESSTTTTSSTCEEEEEE-TTSSEEEEEETTTTEEEEEEE-TTS-TEEEEEEEE
T ss_pred ---------------ecccCC-----CCCcccccccccceeEEECCCCCEEEEEecCCCEEEEEEEeCCCceEEEeeccc
Confidence 000000 0001112334678899999999999886543 589999987665 222 111
Q ss_pred CcccccccCccccEEEEEEcCCCCEEEEEe-CcCeEEEEECC--CCce--eeeeec-------CCCeEEEEEeeCCCEEE
Q 003579 464 DMSERSNYAHNGEVVGVACDSTNTLMISAG-YHGDIKVWDFK--GRDL--KSRWEV-------GCSLVKIVYHRVNGLLA 531 (809)
Q Consensus 464 ~~~~~~~~~h~~~v~~l~~~~~~~~l~s~~-~dg~i~iwd~~--~~~~--~~~~~~-------~~~i~~~~~s~~~~~la 531 (809)
.......+.++|+|+++++.... .++.|.++++. ++.+ +..+.. ......++++|||++|.
T Consensus 188 -------~~~G~GPRh~~f~pdg~~~Yv~~e~s~~v~v~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~i~ispdg~~ly 260 (345)
T PF10282_consen 188 -------VPPGSGPRHLAFSPDGKYAYVVNELSNTVSVFDYDPSDGSLTEIQTISTLPEGFTGENAPAEIAISPDGRFLY 260 (345)
T ss_dssp -------CSTTSSEEEEEE-TTSSEEEEEETTTTEEEEEEEETTTTEEEEEEEEESCETTSCSSSSEEEEEE-TTSSEEE
T ss_pred -------cccCCCCcEEEEcCCcCEEEEecCCCCcEEEEeecccCCceeEEEEeeeccccccccCCceeEEEecCCCEEE
Confidence 14456788999999998876655 67889999988 4432 222211 12578899999999988
Q ss_pred EEeC-CCeEEEEEcC--CC--eEEEEEecCCCCeeeEEECCCCCEEEEEe-CCCeEEEEEc--CCccEEEEee--eCcce
Q 003579 532 TVAD-DLVIRLFDVV--AL--RMVRKFEGHTDRITDFCFSEDGKWLLSSG-MDGSLRIWDV--ILARQIDAIH--VDVSI 601 (809)
Q Consensus 532 ~~~~-d~~I~v~d~~--~~--~~~~~~~~h~~~I~~l~fspdg~~l~s~s-~D~~I~vwd~--~~~~~i~~~~--~~~~v 601 (809)
++.. +..|.+|++. ++ +.+..+.........++++|+|++|+++. .++.|.+|++ .+|.+...-. .-...
T Consensus 261 vsnr~~~sI~vf~~d~~~g~l~~~~~~~~~G~~Pr~~~~s~~g~~l~Va~~~s~~v~vf~~d~~tG~l~~~~~~~~~~~p 340 (345)
T PF10282_consen 261 VSNRGSNSISVFDLDPATGTLTLVQTVPTGGKFPRHFAFSPDGRYLYVANQDSNTVSVFDIDPDTGKLTPVGSSVPIPSP 340 (345)
T ss_dssp EEECTTTEEEEEEECTTTTTEEEEEEEEESSSSEEEEEE-TTSSEEEEEETTTTEEEEEEEETTTTEEEEEEEEEESSSE
T ss_pred EEeccCCEEEEEEEecCCCceEEEEEEeCCCCCccEEEEeCCCCEEEEEecCCCeEEEEEEeCCCCcEEEecccccCCCC
Confidence 8764 6789999993 33 34455554445588999999999999877 5678999976 5676654442 12236
Q ss_pred EEEEE
Q 003579 602 TALSL 606 (809)
Q Consensus 602 ~~l~~ 606 (809)
.|+.|
T Consensus 341 ~ci~f 345 (345)
T PF10282_consen 341 VCIVF 345 (345)
T ss_dssp EEEEE
T ss_pred EEEeC
Confidence 66665
No 238
>KOG2111 consensus Uncharacterized conserved protein, contains WD40 repeats [Function unknown]
Probab=99.56 E-value=5.4e-12 Score=119.71 Aligned_cols=239 Identities=13% Similarity=0.209 Sum_probs=169.4
Q ss_pred EEEEeCCCCCCEEEEEeCCCeEEEEeCCCCceEEEEcCCCCCEEEEEEcCCCCEEEE-EeCC------CeEEEEEeeCCe
Q 003579 142 TCIMHPDTYLNKVIVGSQEGSLQLWNISTKKKLYEFKGWGSSISSCVSSPALDVVAV-GCSD------GKIHVHNVRYDE 214 (809)
Q Consensus 142 ~~~~~p~~~~~~l~~~~~dg~i~lwd~~~~~~~~~~~~~~~~I~~l~~sp~~~~la~-g~~d------g~i~iwd~~~~~ 214 (809)
.+.|..+. ..+++|..+| .++|+.+--+...+-..+.+.+.-+..--..++||. |+.+ ..|.|||-...+
T Consensus 10 svs~NQD~--ScFava~~~G-friyn~~P~ke~~~r~~~~~G~~~veMLfR~N~laLVGGg~~pky~pNkviIWDD~k~~ 86 (346)
T KOG2111|consen 10 SVSFNQDH--SCFAVATDTG-FRIYNCDPFKESASRQFIDGGFKIVEMLFRSNYLALVGGGSRPKYPPNKVIIWDDLKER 86 (346)
T ss_pred EEEEccCC--ceEEEEecCc-eEEEecCchhhhhhhccccCchhhhhHhhhhceEEEecCCCCCCCCCceEEEEecccCc
Confidence 36677777 6788887777 999998765443332222232222222222345554 4333 479999977778
Q ss_pred EEEEEeccCCCcEEEEEEecCCCCEEEEEcCCCcEEEEECC-Cceeeeeeecc-cccceEEEEEecCCCEEEEEc-CCCc
Q 003579 215 ELVTFTHSMRGAVTALAFSSDGQPLLASGASSGVISIWNLE-KRRLQSVIREA-HDNAIISLHFFANEPVLMSAS-ADNS 291 (809)
Q Consensus 215 ~~~~~~~~~~~~V~~l~fs~dg~~~lasg~~dg~I~iwdl~-~~~~~~~~~~~-h~~~V~~l~~~~~~~~l~s~s-~d~~ 291 (809)
++.++.. ..+|.++.++++ .+++.- .+.|.+|... +.+.++.+... ...+..+++-..+..+|+.-| .-|+
T Consensus 87 ~i~el~f--~~~I~~V~l~r~---riVvvl-~~~I~VytF~~n~k~l~~~et~~NPkGlC~~~~~~~k~~LafPg~k~Gq 160 (346)
T KOG2111|consen 87 CIIELSF--NSEIKAVKLRRD---RIVVVL-ENKIYVYTFPDNPKLLHVIETRSNPKGLCSLCPTSNKSLLAFPGFKTGQ 160 (346)
T ss_pred EEEEEEe--ccceeeEEEcCC---eEEEEe-cCeEEEEEcCCChhheeeeecccCCCceEeecCCCCceEEEcCCCccce
Confidence 8888876 588999999987 344443 5789999987 44666665522 234455554444444566544 4689
Q ss_pred EEEEEeeCCCCCceeEEeccCCCCCCeeEEEecCCCEEEEEECCCC-EEEEEeeecccceecchhhHHHHHhhccchhhh
Q 003579 292 IKMWIFDTTDGDPRLLRFRSGHSAPPLCIRFYANGRHILSAGQDRA-FRLFSVIQDQQSRELSQRHVAKRARKLKMKEEE 370 (809)
Q Consensus 292 i~vw~~~~~~~~~~~~~~~~~h~~~v~~i~~~~~~~~l~s~~~dg~-i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 370 (809)
|++-++...... .-.....|...|.|++.+-+|..++|+|..|+ ||+||..++....++..+.
T Consensus 161 vQi~dL~~~~~~--~p~~I~AH~s~Iacv~Ln~~Gt~vATaStkGTLIRIFdt~~g~~l~E~RRG~-------------- 224 (346)
T KOG2111|consen 161 VQIVDLASTKPN--APSIINAHDSDIACVALNLQGTLVATASTKGTLIRIFDTEDGTLLQELRRGV-------------- 224 (346)
T ss_pred EEEEEhhhcCcC--CceEEEcccCceeEEEEcCCccEEEEeccCcEEEEEEEcCCCcEeeeeecCC--------------
Confidence 999988765431 23445699999999999999999999999998 6999999998888875532
Q ss_pred hccCceeEEeeccccccccceeEEeecCCceEEEEEeeeeeecceeeecCCCCCCCeEEEEEcCCCCEEEEEeCCCcEEE
Q 003579 371 LKLKPVIAFDCAEIRERDWCNVVTCHMDTAQAYVWRLQNFVLGEHILRPCPENPTAVKACTISACGNFAVLGTAGGWIER 450 (809)
Q Consensus 371 ~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~v~~v~~s~~g~~l~~g~~~g~i~i 450 (809)
....+.+++|||++.++++++..|++++
T Consensus 225 ----------------------------------------------------d~A~iy~iaFSp~~s~LavsSdKgTlHi 252 (346)
T KOG2111|consen 225 ----------------------------------------------------DRADIYCIAFSPNSSWLAVSSDKGTLHI 252 (346)
T ss_pred ----------------------------------------------------chheEEEEEeCCCccEEEEEcCCCeEEE
Confidence 1278999999999999999999999999
Q ss_pred EECCCCc
Q 003579 451 FNLQSGI 457 (809)
Q Consensus 451 ~~~~~~~ 457 (809)
|.+....
T Consensus 253 F~l~~~~ 259 (346)
T KOG2111|consen 253 FSLRDTE 259 (346)
T ss_pred EEeecCC
Confidence 9987643
No 239
>PRK03629 tolB translocation protein TolB; Provisional
Probab=99.56 E-value=1.2e-12 Score=141.65 Aligned_cols=170 Identities=13% Similarity=0.054 Sum_probs=119.7
Q ss_pred eEEEEEcCCCCEEEEE-eCCC--cEEEEECCCCceeeeeeCcccccccCccccEEEEEEcCCCCEEEEEeCc-C--eEEE
Q 003579 427 VKACTISACGNFAVLG-TAGG--WIERFNLQSGISRGSYLDMSERSNYAHNGEVVGVACDSTNTLMISAGYH-G--DIKV 500 (809)
Q Consensus 427 v~~v~~s~~g~~l~~g-~~~g--~i~i~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~l~s~~~d-g--~i~i 500 (809)
.....|+|||+.++.. ..+| .|++||+.++...... .+...+....|+|+|+.|+.++.+ + .|..
T Consensus 245 ~~~~~~SPDG~~La~~~~~~g~~~I~~~d~~tg~~~~lt---------~~~~~~~~~~wSPDG~~I~f~s~~~g~~~Iy~ 315 (429)
T PRK03629 245 NGAPAFSPDGSKLAFALSKTGSLNLYVMDLASGQIRQVT---------DGRSNNTEPTWFPDSQNLAYTSDQAGRPQVYK 315 (429)
T ss_pred cCCeEECCCCCEEEEEEcCCCCcEEEEEECCCCCEEEcc---------CCCCCcCceEECCCCCEEEEEeCCCCCceEEE
Confidence 4467999999988875 3445 5889999888654432 334567889999999988877654 4 4555
Q ss_pred EECCCCceeeeeecCCCeEEEEEeeCCCEEEEEeCC---CeEEEEEcCCCeEEEEEecCCCCeeeEEECCCCCEEEEEeC
Q 003579 501 WDFKGRDLKSRWEVGCSLVKIVYHRVNGLLATVADD---LVIRLFDVVALRMVRKFEGHTDRITDFCFSEDGKWLLSSGM 577 (809)
Q Consensus 501 wd~~~~~~~~~~~~~~~i~~~~~s~~~~~la~~~~d---~~I~v~d~~~~~~~~~~~~h~~~I~~l~fspdg~~l~s~s~ 577 (809)
+|+.+++...............|+|||++++..+.+ ..|++||+.+++.. .+... .......|+|||++|+.++.
T Consensus 316 ~d~~~g~~~~lt~~~~~~~~~~~SpDG~~Ia~~~~~~g~~~I~~~dl~~g~~~-~Lt~~-~~~~~p~~SpDG~~i~~~s~ 393 (429)
T PRK03629 316 VNINGGAPQRITWEGSQNQDADVSSDGKFMVMVSSNGGQQHIAKQDLATGGVQ-VLTDT-FLDETPSIAPNGTMVIYSSS 393 (429)
T ss_pred EECCCCCeEEeecCCCCccCEEECCCCCEEEEEEccCCCceEEEEECCCCCeE-EeCCC-CCCCCceECCCCCEEEEEEc
Confidence 577776554333333455678999999999887653 46889999888643 34322 23456889999999999887
Q ss_pred CCe---EEEEEcCCccEEEEeee-CcceEEEEEcC
Q 003579 578 DGS---LRIWDVILARQIDAIHV-DVSITALSLSP 608 (809)
Q Consensus 578 D~~---I~vwd~~~~~~i~~~~~-~~~v~~l~~sp 608 (809)
++. +.++++. |.....+.. ...+...+|+|
T Consensus 394 ~~~~~~l~~~~~~-G~~~~~l~~~~~~~~~p~Wsp 427 (429)
T PRK03629 394 QGMGSVLNLVSTD-GRFKARLPATDGQVKFPAWSP 427 (429)
T ss_pred CCCceEEEEEECC-CCCeEECccCCCCcCCcccCC
Confidence 764 6777874 555555554 44588899987
No 240
>PF04762 IKI3: IKI3 family; InterPro: IPR006849 Members of this family are components of the elongator multi-subunit component of a novel RNA polymerase II holoenzyme for transcriptional elongation [].
Probab=99.56 E-value=3.6e-09 Score=123.12 Aligned_cols=478 Identities=14% Similarity=0.099 Sum_probs=276.2
Q ss_pred ccccEEEEEE--eCCEEEEEeCCCcEEEE----EcCCCccccceeeeEEcCCccccEEEEeCCCCCCEEEEEeCCCeEEE
Q 003579 92 HSAKVNLLLL--FGEHILSIDIDGNMFIW----AFKGIEENLAPVGHVKLDDKFTPTCIMHPDTYLNKVIVGSQEGSLQL 165 (809)
Q Consensus 92 h~~~V~~l~~--~g~~l~s~~~dg~i~vW----d~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~l~~~~~dg~i~l 165 (809)
..+.|.++.+ +...|+.+..+|.|.+. +..+... .....-...+..+.|+||. ..|+..+.+|++.+
T Consensus 74 ~~~~ivs~~yl~d~~~l~~~~~~Gdi~~~~~~~~~~~~~~-----E~VG~vd~GI~a~~WSPD~--Ella~vT~~~~l~~ 146 (928)
T PF04762_consen 74 PNDKIVSFQYLADSESLCIALASGDIILVREDPDPDEDEI-----EIVGSVDSGILAASWSPDE--ELLALVTGEGNLLL 146 (928)
T ss_pred CCCcEEEEEeccCCCcEEEEECCceEEEEEccCCCCCcee-----EEEEEEcCcEEEEEECCCc--CEEEEEeCCCEEEE
Confidence 3467888886 57788888899999998 3333322 1222234456677899999 88999999999888
Q ss_pred EeCCCCceEE------------------------EEcC------------------------CCCCEEEEEEcCCCCEEE
Q 003579 166 WNISTKKKLY------------------------EFKG------------------------WGSSISSCVSSPALDVVA 197 (809)
Q Consensus 166 wd~~~~~~~~------------------------~~~~------------------------~~~~I~~l~~sp~~~~la 197 (809)
.+- +..++. .|+| +...-..++|-.||.++|
T Consensus 147 mt~-~fd~i~E~~l~~~~~~~~~~VsVGWGkKeTQF~Gs~gK~aa~~~~~p~~~~~d~~~~s~dd~~~~ISWRGDG~yFA 225 (928)
T PF04762_consen 147 MTR-DFDPISEVPLDSDDFGESKHVSVGWGKKETQFHGSAGKAAARQLRDPTVPKVDEGKLSWDDGRVRISWRGDGEYFA 225 (928)
T ss_pred Eec-cceEEEEeecCccccCCCceeeeccCcccCccCcchhhhhhhhccCCCCCccccCccccCCCceEEEECCCCcEEE
Confidence 742 222221 1111 122445788999999999
Q ss_pred EEeC---C---CeEEEEEeeCCeEEEEEeccCCCcEEEEEEecCCCCEEEEEcC---CCcEEEEECCCceeeeeeec---
Q 003579 198 VGCS---D---GKIHVHNVRYDEELVTFTHSMRGAVTALAFSSDGQPLLASGAS---SGVISIWNLEKRRLQSVIRE--- 265 (809)
Q Consensus 198 ~g~~---d---g~i~iwd~~~~~~~~~~~~~~~~~V~~l~fs~dg~~~lasg~~---dg~I~iwdl~~~~~~~~~~~--- 265 (809)
+.+. . ..++||+-+ |+...+-. .-.+--.+++|.|.|. ++|+... ...|.+|.- +|-....+..
T Consensus 226 Vss~~~~~~~~R~iRVy~Re-G~L~stSE-~v~gLe~~l~WrPsG~-lIA~~q~~~~~~~VvFfEr-NGLrhgeF~l~~~ 301 (928)
T PF04762_consen 226 VSSVEPETGSRRVIRVYSRE-GELQSTSE-PVDGLEGALSWRPSGN-LIASSQRLPDRHDVVFFER-NGLRHGEFTLRFD 301 (928)
T ss_pred EEEEEcCCCceeEEEEECCC-ceEEeccc-cCCCccCCccCCCCCC-EEEEEEEcCCCcEEEEEec-CCcEeeeEecCCC
Confidence 9875 2 579999965 55333332 3245556899999999 7776653 456778874 3422222221
Q ss_pred ccccceEEEEEecCCCEEEEEcCCCcEEEEEeeCCCCCceeEEecc-CCCCCCeeEEEec-CCCEEEEEECCCCEEEEEe
Q 003579 266 AHDNAIISLHFFANEPVLMSASADNSIKMWIFDTTDGDPRLLRFRS-GHSAPPLCIRFYA-NGRHILSAGQDRAFRLFSV 343 (809)
Q Consensus 266 ~h~~~V~~l~~~~~~~~l~s~s~d~~i~vw~~~~~~~~~~~~~~~~-~h~~~v~~i~~~~-~~~~l~s~~~dg~i~~wd~ 343 (809)
.....|..+.|++|+..|+..-.|. |.+|-.. +..+-+.+.+. .....+..+.|+| +...|.....+|.+..++.
T Consensus 302 ~~~~~v~~l~Wn~ds~iLAv~~~~~-vqLWt~~--NYHWYLKqei~~~~~~~~~~~~Wdpe~p~~L~v~t~~g~~~~~~~ 378 (928)
T PF04762_consen 302 PEEEKVIELAWNSDSEILAVWLEDR-VQLWTRS--NYHWYLKQEIRFSSSESVNFVKWDPEKPLRLHVLTSNGQYEIYDF 378 (928)
T ss_pred CCCceeeEEEECCCCCEEEEEecCC-ceEEEee--CCEEEEEEEEEccCCCCCCceEECCCCCCEEEEEecCCcEEEEEE
Confidence 3456899999999999999977665 9999543 22222222222 2233455699999 5566777777777776665
Q ss_pred eecccceecchhhHHHHHhhccchhhhhccCceeEEeeccccccccceeEEeecCCceEEEEEeeeeeecceeeecCCCC
Q 003579 344 IQDQQSRELSQRHVAKRARKLKMKEEELKLKPVIAFDCAEIRERDWCNVVTCHMDTAQAYVWRLQNFVLGEHILRPCPEN 423 (809)
Q Consensus 344 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~ 423 (809)
.-...... ... ..+.-.++--+...+.+-.++...++..........
T Consensus 379 ~~~v~~s~--------------------------------~~~-~~D~g~vaVIDG~~lllTpf~~a~VPPPMs~~~l~~ 425 (928)
T PF04762_consen 379 AWDVSRSP--------------------------------GSS-PNDNGTVAVIDGNKLLLTPFRRAVVPPPMSSYELEL 425 (928)
T ss_pred EEEEEecC--------------------------------CCC-ccCceEEEEEeCCeEEEecccccCCCchHhceEEcC
Confidence 32211100 000 001112222334444444444433322222222233
Q ss_pred CCCeEEEEEcCCCCEEEEEeCCCcEEEEECCCCceee--------eeeCc--ccccccCccccEEEEEEcCCCCEEEEEe
Q 003579 424 PTAVKACTISACGNFAVLGTAGGWIERFNLQSGISRG--------SYLDM--SERSNYAHNGEVVGVACDSTNTLMISAG 493 (809)
Q Consensus 424 ~~~v~~v~~s~~g~~l~~g~~~g~i~i~~~~~~~~~~--------~~~~~--~~~~~~~h~~~v~~l~~~~~~~~l~s~~ 493 (809)
+..|.+++|++++..+++-..+|.+.+|......... .+... .......-...+..++|..++..++...
T Consensus 426 ~~~v~~vaf~~~~~~~avl~~d~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 505 (928)
T PF04762_consen 426 PSPVNDVAFSPSNSRFAVLTSDGSLSIYEWDLKNMWSVKPPKLLSSISLDSMDISDSELPLGSLRQLAWLNDDTLLVLSD 505 (928)
T ss_pred CCCcEEEEEeCCCCeEEEEECCCCEEEEEecCCCcccccCcchhhhcccccccccccccccccEEEEEEeCCCEEEEEEe
Confidence 5889999999999999999999999999965543221 11100 0000112245678888888887776666
Q ss_pred Cc---CeEEEEECCCCc---eeeee-ecCCCeEEEEEeeCCCEEEEEeCCCeEEEEEcCCCeE-EEEEecCCCCeeeEEE
Q 003579 494 YH---GDIKVWDFKGRD---LKSRW-EVGCSLVKIVYHRVNGLLATVADDLVIRLFDVVALRM-VRKFEGHTDRITDFCF 565 (809)
Q Consensus 494 ~d---g~i~iwd~~~~~---~~~~~-~~~~~i~~~~~s~~~~~la~~~~d~~I~v~d~~~~~~-~~~~~~h~~~I~~l~f 565 (809)
.+ ..+.++++...+ ..... .....+..+...++...++.-..+|.+..++...... +..|..-...+..+.+
T Consensus 506 ~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~q~~~G~v~~~~~~~~~~~~~~fp~~c~~~~~~~~ 585 (928)
T PF04762_consen 506 SDSNQSKIVLVDIDDSENSASVESSTEVDGVVLIISSSPDSGSLYIQTNDGKVFQLSSDGELSQIVKFPQPCPWMEVCQI 585 (928)
T ss_pred cCcccceEEEEEeccCCCceeEEEEeccCceEEEEeeCCCCcEEEEEECCCEEEEeecCCCccccccCCCCCcEEEEEEE
Confidence 54 678888874332 22222 2234555555555555577777788888666554322 2223222222222222
Q ss_pred CCCC--CEEEEEeCCCeEEEEEcCCccEEEEeeeCcceEEEEEcCCCCeEEEEEeCCCeEEEeecC
Q 003579 566 SEDG--KWLLSSGMDGSLRIWDVILARQIDAIHVDVSITALSLSPNMDVLATAHVDQNGVYLWVNR 629 (809)
Q Consensus 566 spdg--~~l~s~s~D~~I~vwd~~~~~~i~~~~~~~~v~~l~~spdg~~lat~~~d~~~i~lW~~~ 629 (809)
.... ..++.-+..|.+++ +++.+ ...|++.+.+ +.+|+.+.... .+++..+.
T Consensus 586 ~~~~~~~~~~GLs~~~~Ly~----n~~~l-----a~~~tSF~v~--~~~Ll~TT~~h-~l~fv~L~ 639 (928)
T PF04762_consen 586 NGSEDKRVLFGLSSNGRLYA----NSRLL-----ASNCTSFAVT--DSFLLFTTTQH-TLKFVHLN 639 (928)
T ss_pred CCccceeEEEEECCCCEEEE----CCEEE-----ecCCceEEEE--cCEEEEEecCc-eEEEEECc
Confidence 2221 13333344444432 22222 2568888874 55777666666 48888776
No 241
>KOG1354 consensus Serine/threonine protein phosphatase 2A, regulatory subunit [Signal transduction mechanisms]
Probab=99.56 E-value=5.7e-13 Score=127.17 Aligned_cols=330 Identities=16% Similarity=0.232 Sum_probs=212.0
Q ss_pred CCCEEEEEEcCCCCEEEEEeCCCeEEEEEeeCCeE----EE-EEeccC-----------CCcEEEEEEecCCC-CEEEEE
Q 003579 181 GSSISSCVSSPALDVVAVGCSDGKIHVHNVRYDEE----LV-TFTHSM-----------RGAVTALAFSSDGQ-PLLASG 243 (809)
Q Consensus 181 ~~~I~~l~~sp~~~~la~g~~dg~i~iwd~~~~~~----~~-~~~~~~-----------~~~V~~l~fs~dg~-~~lasg 243 (809)
..-|.++.|...|.+||+|..+|.|.++.-..... .. .+..|. ..+|..+.|.+++. ..+...
T Consensus 25 adiis~vef~~~Ge~LatGdkgGRVv~f~r~~~~~~ey~~~t~fqshepEFDYLkSleieEKinkIrw~~~~n~a~FLls 104 (433)
T KOG1354|consen 25 ADIISAVEFDHYGERLATGDKGGRVVLFEREKLYKGEYNFQTEFQSHEPEFDYLKSLEIEEKINKIRWLDDGNLAEFLLS 104 (433)
T ss_pred hcceeeEEeecccceEeecCCCCeEEEeecccccccceeeeeeeeccCcccchhhhhhhhhhhhhceecCCCCccEEEEe
Confidence 56789999999999999999999999997543221 22 222211 24788999988764 244455
Q ss_pred cCCCcEEEEECCCcee-----------------------------------eeeeecccccceEEEEEecCCCEEEEEcC
Q 003579 244 ASSGVISIWNLEKRRL-----------------------------------QSVIREAHDNAIISLHFFANEPVLMSASA 288 (809)
Q Consensus 244 ~~dg~I~iwdl~~~~~-----------------------------------~~~~~~~h~~~V~~l~~~~~~~~l~s~s~ 288 (809)
+.|.+|++|-+..... .+....+|.--|.++.+..|+..++++.
T Consensus 105 tNdktiKlWKi~er~~k~~~~~~~~~~~~~~~~~lr~p~~~~~~~~vea~prRv~aNaHtyhiNSIS~NsD~Et~lSAD- 183 (433)
T KOG1354|consen 105 TNDKTIKLWKIRERGSKKEGYNLPEEGPPGTITSLRLPVEGRHDLEVEASPRRVYANAHTYHINSISVNSDKETFLSAD- 183 (433)
T ss_pred cCCcceeeeeeeccccccccccccccCCCCccceeeceeeccccceeeeeeeeeccccceeEeeeeeecCccceEeecc-
Confidence 6799999998754311 1222357888999999999999888875
Q ss_pred CCcEEEEEeeCCCCCceeEEeccC----CCCCCeeEEEec-CCCEEEEEECCCCEEEEEeeecccceecchhhHHHHHhh
Q 003579 289 DNSIKMWIFDTTDGDPRLLRFRSG----HSAPPLCIRFYA-NGRHILSAGQDRAFRLFSVIQDQQSRELSQRHVAKRARK 363 (809)
Q Consensus 289 d~~i~vw~~~~~~~~~~~~~~~~~----h~~~v~~i~~~~-~~~~l~s~~~dg~i~~wd~~~~~~~~~~~~~~~~~~~~~ 363 (809)
|=.|.+|+++..++...++..... -..-|++..|+| .-+.++..+..|+|++.|++.....-....
T Consensus 184 dLRINLWnlei~d~sFnIVDIKP~nmEeLteVITsaEFhp~~cn~f~YSSSKGtIrLcDmR~~aLCd~hsK--------- 254 (433)
T KOG1354|consen 184 DLRINLWNLEIIDQSFNIVDIKPANMEELTEVITSAEFHPHHCNVFVYSSSKGTIRLCDMRQSALCDAHSK--------- 254 (433)
T ss_pred ceeeeeccccccCCceeEEEccccCHHHHHHHHhhhccCHhHccEEEEecCCCcEEEeechhhhhhcchhh---------
Confidence 778999998877655544433221 123577888888 455777778889999998864322111000
Q ss_pred ccchhhhhccCceeEEeeccccccccceeEEeecCCceEEEEEeeeeeecceeeecCCCCCCCeEEEEEcCCCCEEEEEe
Q 003579 364 LKMKEEELKLKPVIAFDCAEIRERDWCNVVTCHMDTAQAYVWRLQNFVLGEHILRPCPENPTAVKACTISACGNFAVLGT 443 (809)
Q Consensus 364 ~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~v~~v~~s~~g~~l~~g~ 443 (809)
T Consensus 255 -------------------------------------------------------------------------------- 254 (433)
T KOG1354|consen 255 -------------------------------------------------------------------------------- 254 (433)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred CCCcEEEEECCCCceeeeeeCcccccccCccccEEEEEEcCCCCEEEEEeCcCeEEEEECC-CCceeeeeecC-------
Q 003579 444 AGGWIERFNLQSGISRGSYLDMSERSNYAHNGEVVGVACDSTNTLMISAGYHGDIKVWDFK-GRDLKSRWEVG------- 515 (809)
Q Consensus 444 ~~g~i~i~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~l~s~~~dg~i~iwd~~-~~~~~~~~~~~------- 515 (809)
+|..........+ ..+--..|..+.|++.|+++++-.. -+|++||+. ..+++.+++.+
T Consensus 255 ------lfEepedp~~rsf-------fseiIsSISDvKFs~sGryilsRDy-ltvk~wD~nme~~pv~t~~vh~~lr~kL 320 (433)
T KOG1354|consen 255 ------LFEEPEDPSSRSF-------FSEIISSISDVKFSHSGRYILSRDY-LTVKLWDLNMEAKPVETYPVHEYLRSKL 320 (433)
T ss_pred ------hhccccCCcchhh-------HHHHhhhhhceEEccCCcEEEEecc-ceeEEEeccccCCcceEEeehHhHHHHH
Confidence 0000000000000 0134467889999999999998765 789999994 55666666543
Q ss_pred ---------CCeEEEEEeeCCCEEEEEeCCCeEEEEEcCCCeE-EEEEecCCCC--eeeEEECCCCCEEEEEeCCCeEEE
Q 003579 516 ---------CSLVKIVYHRVNGLLATVADDLVIRLFDVVALRM-VRKFEGHTDR--ITDFCFSEDGKWLLSSGMDGSLRI 583 (809)
Q Consensus 516 ---------~~i~~~~~s~~~~~la~~~~d~~I~v~d~~~~~~-~~~~~~h~~~--I~~l~fspdg~~l~s~s~D~~I~v 583 (809)
-.-..++|+-++.++++|+.....++|+...|.. -.++...... ...+ ..-+.+.+++.....
T Consensus 321 c~lYEnD~IfdKFec~~sg~~~~v~TGsy~n~frvf~~~~gsk~d~tl~asr~~~~~~~~---~k~~~V~~~g~r~~~-- 395 (433)
T KOG1354|consen 321 CSLYENDAIFDKFECSWSGNDSYVMTGSYNNVFRVFNLARGSKEDFTLEASRKNMKPRKV---LKLRLVSSSGKRKRD-- 395 (433)
T ss_pred HHHhhccchhheeEEEEcCCcceEecccccceEEEecCCCCcceeecccccccCCccccc---ccceeeecCCCcccc--
Confidence 1223578998899999999999999999766533 2233322222 1111 112344444444331
Q ss_pred EEcCCccEEEEeeeCcceEEEEEcCCCCeEEEEEeCCCeEEEe
Q 003579 584 WDVILARQIDAIHVDVSITALSLSPNMDVLATAHVDQNGVYLW 626 (809)
Q Consensus 584 wd~~~~~~i~~~~~~~~v~~l~~spdg~~lat~~~d~~~i~lW 626 (809)
.-.+..+.....+...+|+|..+.+|.+..+. ++++
T Consensus 396 -----~~~vd~ldf~kkilh~aWhp~en~ia~aatnn--lyif 431 (433)
T KOG1354|consen 396 -----EISVDALDFRKKILHTAWHPKENSIAVAATNN--LYIF 431 (433)
T ss_pred -----ccccchhhhhhHHHhhccCCccceeeeeecCc--eEEe
Confidence 22223344445577889999999999998875 6765
No 242
>PRK04922 tolB translocation protein TolB; Provisional
Probab=99.56 E-value=3.2e-12 Score=139.18 Aligned_cols=232 Identities=15% Similarity=0.072 Sum_probs=154.3
Q ss_pred cEEEEEeeCCCCCceeEEeccCCCCCCeeEEEecCCCEEEEEECC---CCEEEEEeeecccceecchhhHHHHHhhccch
Q 003579 291 SIKMWIFDTTDGDPRLLRFRSGHSAPPLCIRFYANGRHILSAGQD---RAFRLFSVIQDQQSRELSQRHVAKRARKLKMK 367 (809)
Q Consensus 291 ~i~vw~~~~~~~~~~~~~~~~~h~~~v~~i~~~~~~~~l~s~~~d---g~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~ 367 (809)
.|.+||.+.. ..+ .+..+...+.+.+|+|||+.|+..+.+ ..|++|++..+.... +
T Consensus 185 ~l~i~D~~g~--~~~---~lt~~~~~v~~p~wSpDg~~la~~s~~~~~~~l~~~dl~~g~~~~-l--------------- 243 (433)
T PRK04922 185 ALQVADSDGY--NPQ---TILRSAEPILSPAWSPDGKKLAYVSFERGRSAIYVQDLATGQREL-V--------------- 243 (433)
T ss_pred EEEEECCCCC--Cce---EeecCCCccccccCCCCCCEEEEEecCCCCcEEEEEECCCCCEEE-e---------------
Confidence 5677765432 222 233566789999999999999987643 357788775432211 0
Q ss_pred hhhhccCceeEEeeccccccccceeEEeecCCceEEEEEeeeeeecceeeecCCCCCCCeEEEEEcCCCCEEEEE-eCCC
Q 003579 368 EEELKLKPVIAFDCAEIRERDWCNVVTCHMDTAQAYVWRLQNFVLGEHILRPCPENPTAVKACTISACGNFAVLG-TAGG 446 (809)
Q Consensus 368 ~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~v~~v~~s~~g~~l~~g-~~~g 446 (809)
. ...+...+..|+|+|+.+++. +.+|
T Consensus 244 --------------------------------------------------~---~~~g~~~~~~~SpDG~~l~~~~s~~g 270 (433)
T PRK04922 244 --------------------------------------------------A---SFRGINGAPSFSPDGRRLALTLSRDG 270 (433)
T ss_pred --------------------------------------------------c---cCCCCccCceECCCCCEEEEEEeCCC
Confidence 0 011334467999999987654 4455
Q ss_pred --cEEEEECCCCceeeeeeCcccccccCccccEEEEEEcCCCCEEEEEeC-cCe--EEEEECCCCceeeeeecCCCeEEE
Q 003579 447 --WIERFNLQSGISRGSYLDMSERSNYAHNGEVVGVACDSTNTLMISAGY-HGD--IKVWDFKGRDLKSRWEVGCSLVKI 521 (809)
Q Consensus 447 --~i~i~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~l~s~~~-dg~--i~iwd~~~~~~~~~~~~~~~i~~~ 521 (809)
.|++||+.++...... .+.......+|+|+|+.++.++. +|. |.++++.+++..............
T Consensus 271 ~~~Iy~~d~~~g~~~~lt---------~~~~~~~~~~~spDG~~l~f~sd~~g~~~iy~~dl~~g~~~~lt~~g~~~~~~ 341 (433)
T PRK04922 271 NPEIYVMDLGSRQLTRLT---------NHFGIDTEPTWAPDGKSIYFTSDRGGRPQIYRVAASGGSAERLTFQGNYNARA 341 (433)
T ss_pred CceEEEEECCCCCeEECc---------cCCCCccceEECCCCCEEEEEECCCCCceEEEEECCCCCeEEeecCCCCccCE
Confidence 6999999888754321 44445567899999998887763 444 777777777654433333445578
Q ss_pred EEeeCCCEEEEEeCCC---eEEEEEcCCCeEEEEEecCCCCeeeEEECCCCCEEEEEeCC---CeEEEEEcCCccEEEEe
Q 003579 522 VYHRVNGLLATVADDL---VIRLFDVVALRMVRKFEGHTDRITDFCFSEDGKWLLSSGMD---GSLRIWDVILARQIDAI 595 (809)
Q Consensus 522 ~~s~~~~~la~~~~d~---~I~v~d~~~~~~~~~~~~h~~~I~~l~fspdg~~l~s~s~D---~~I~vwd~~~~~~i~~~ 595 (809)
+|+|+|++++..+.++ .|++||+.+++.. .+. +........|+|||++|+..+.+ +.|.++++. |.....+
T Consensus 342 ~~SpDG~~Ia~~~~~~~~~~I~v~d~~~g~~~-~Lt-~~~~~~~p~~spdG~~i~~~s~~~g~~~L~~~~~~-g~~~~~l 418 (433)
T PRK04922 342 SVSPDGKKIAMVHGSGGQYRIAVMDLSTGSVR-TLT-PGSLDESPSFAPNGSMVLYATREGGRGVLAAVSTD-GRVRQRL 418 (433)
T ss_pred EECCCCCEEEEEECCCCceeEEEEECCCCCeE-ECC-CCCCCCCceECCCCCEEEEEEecCCceEEEEEECC-CCceEEc
Confidence 9999999998876543 6999999888754 343 33345678999999998877653 468888885 4445555
Q ss_pred ee-CcceEEEEEcC
Q 003579 596 HV-DVSITALSLSP 608 (809)
Q Consensus 596 ~~-~~~v~~l~~sp 608 (809)
.. ...+...+|+|
T Consensus 419 ~~~~g~~~~p~wsp 432 (433)
T PRK04922 419 VSADGEVREPAWSP 432 (433)
T ss_pred ccCCCCCCCCccCC
Confidence 43 34577788887
No 243
>KOG2041 consensus WD40 repeat protein [General function prediction only]
Probab=99.55 E-value=1.9e-11 Score=127.24 Aligned_cols=519 Identities=12% Similarity=0.118 Sum_probs=318.8
Q ss_pred CCCCcEEEEEeCCeEEEEECCe---EEEEECCee-----------------EEEEccccccEEEEEEe--CCEEEEEeCC
Q 003579 55 LPKKIRALASYRDYTFAAYGNH---IAVVKRAHQ-----------------VATWSRHSAKVNLLLLF--GEHILSIDID 112 (809)
Q Consensus 55 ~~~~I~~la~~~~~~~~a~g~~---i~vw~~~~~-----------------~~~~~~h~~~V~~l~~~--g~~l~s~~~d 112 (809)
......|+++..+.-|+|+|+. +.|.+.++. -.++.||++.|.-+.|+ .+.|-+.+.+
T Consensus 13 nnvkL~c~~WNke~gyIAcgG~dGlLKVlKl~t~t~d~~~~glaa~snLsmNQtLeGH~~sV~vvTWNe~~QKLTtSDt~ 92 (1189)
T KOG2041|consen 13 NNVKLHCAEWNKESGYIACGGADGLLKVLKLGTDTTDLNKSGLAAASNLSMNQTLEGHNASVMVVTWNENNQKLTTSDTS 92 (1189)
T ss_pred CCceEEEEEEcccCCeEEeccccceeEEEEccccCCcccccccccccccchhhhhccCcceEEEEEeccccccccccCCC
Confidence 3456789999999999999876 677753221 12378999999999995 5678888889
Q ss_pred CcEEEEEcCCCccccceeeeEEcCCccccEEEEeCCCCCCEEEEEeCCCeEEEEeCCCCceEE--EEcCCCCCEEEEEEc
Q 003579 113 GNMFIWAFKGIEENLAPVGHVKLDDKFTPTCIMHPDTYLNKVIVGSQEGSLQLWNISTKKKLY--EFKGWGSSISSCVSS 190 (809)
Q Consensus 113 g~i~vWd~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~l~~~~~dg~i~lwd~~~~~~~~--~~~~~~~~I~~l~~s 190 (809)
|.|.||=+-.+.-.-..+. .-....+.++.|..+| .+|.....||.|.+=.++. ..+. .+++ .....+.|+
T Consensus 93 GlIiVWmlykgsW~EEMiN--nRnKSvV~SmsWn~dG--~kIcIvYeDGavIVGsvdG-NRIwgKeLkg--~~l~hv~ws 165 (1189)
T KOG2041|consen 93 GLIIVWMLYKGSWCEEMIN--NRNKSVVVSMSWNLDG--TKICIVYEDGAVIVGSVDG-NRIWGKELKG--QLLAHVLWS 165 (1189)
T ss_pred ceEEEEeeecccHHHHHhh--CcCccEEEEEEEcCCC--cEEEEEEccCCEEEEeecc-ceecchhcch--heccceeec
Confidence 9999998876653111010 0123445666777788 7888888888887766643 3332 1222 334578899
Q ss_pred CCCCEEEEEeCCCeEEEEEeeCCe-------EEEEEec---cCCCcEEEEEEe--------cCCCCEEEEEcCCCcEEEE
Q 003579 191 PALDVVAVGCSDGKIHVHNVRYDE-------ELVTFTH---SMRGAVTALAFS--------SDGQPLLASGASSGVISIW 252 (809)
Q Consensus 191 p~~~~la~g~~dg~i~iwd~~~~~-------~~~~~~~---~~~~~V~~l~fs--------~dg~~~lasg~~dg~I~iw 252 (809)
+|.+.+..+-.+|.++++|-...- +.....+ .....|..+.|. ||.. .|+++..+|.+.|.
T Consensus 166 ~D~~~~Lf~~ange~hlydnqgnF~~Kl~~~c~Vn~tg~~s~~~~kia~i~w~~g~~~~v~pdrP-~lavcy~nGr~QiM 244 (1189)
T KOG2041|consen 166 EDLEQALFKKANGETHLYDNQGNFERKLEKDCEVNGTGIFSNFPTKIAEIEWNTGPYQPVPPDRP-RLAVCYANGRMQIM 244 (1189)
T ss_pred ccHHHHHhhhcCCcEEEecccccHHHhhhhceEEeeeeeecCCCccccceeeccCccccCCCCCC-EEEEEEcCceehhh
Confidence 999999999999999999975321 1111111 112245666664 3444 89999999999988
Q ss_pred ECCCceeeeeeecccccceEEEEEecCCCEEEEEcCCC---------cEEEEEeeCCCCCceeEEeccCCCCCCeeEEEe
Q 003579 253 NLEKRRLQSVIREAHDNAIISLHFFANEPVLMSASADN---------SIKMWIFDTTDGDPRLLRFRSGHSAPPLCIRFY 323 (809)
Q Consensus 253 dl~~~~~~~~~~~~h~~~V~~l~~~~~~~~l~s~s~d~---------~i~vw~~~~~~~~~~~~~~~~~h~~~v~~i~~~ 323 (809)
.-++......+. ..-.+....|+++|..|+.+|.|. .|.++. .-...+..+.-....|++++|-
T Consensus 245 R~eND~~Pvv~d--tgm~~vgakWnh~G~vLAvcG~~~da~~~~d~n~v~Fys-----p~G~i~gtlkvpg~~It~lsWE 317 (1189)
T KOG2041|consen 245 RSENDPEPVVVD--TGMKIVGAKWNHNGAVLAVCGNDSDADEPTDSNKVHFYS-----PYGHIVGTLKVPGSCITGLSWE 317 (1189)
T ss_pred hhcCCCCCeEEe--cccEeecceecCCCcEEEEccCcccccCccccceEEEec-----cchhheEEEecCCceeeeeEEc
Confidence 766554444444 235689999999999999998653 344431 1224566666677889999998
Q ss_pred cCCCEEEEEECCCCEEEEEeeecccceecchhhHHHHHhhccchhhhhccCceeEEeeccccccccceeEEeec----CC
Q 003579 324 ANGRHILSAGQDRAFRLFSVIQDQQSRELSQRHVAKRARKLKMKEEELKLKPVIAFDCAEIRERDWCNVVTCHM----DT 399 (809)
Q Consensus 324 ~~~~~l~s~~~dg~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~----~~ 399 (809)
..|-.++.+ .|+.|.+=+++..-.-..+. ..++.... -.
T Consensus 318 g~gLriA~A-vdsfiyfanIRP~ykWgy~e------------------------------------~TvVy~y~~~e~p~ 360 (1189)
T KOG2041|consen 318 GTGLRIAIA-VDSFIYFANIRPEYKWGYIE------------------------------------ETVVYVYQKEELPQ 360 (1189)
T ss_pred CCceEEEEE-ecceEEEEeecccceEEEee------------------------------------eEEEEEEccCCCcc
Confidence 877666655 46677766654332111110 01111111 12
Q ss_pred ceEEEEEeeeeeecceeeecCCCCCCCeEEEEEcCCCCEEEEEeCCCcEEEEECCCCceeeeee---CcccccccCcccc
Q 003579 400 AQAYVWRLQNFVLGEHILRPCPENPTAVKACTISACGNFAVLGTAGGWIERFNLQSGISRGSYL---DMSERSNYAHNGE 476 (809)
Q Consensus 400 ~~~~~w~~~~~~~~~~~~~~~~~~~~~v~~v~~s~~g~~l~~g~~~g~i~i~~~~~~~~~~~~~---~~~~~~~~~h~~~ 476 (809)
..+..||..+...-... -....++++..+--.++.-..+|.+.-++.-....+.-+. ......+...-..
T Consensus 361 y~i~Fwdtk~nek~vK~-------V~~~~~~a~~~ehCvL~~~~d~~~i~e~s~le~~~~~~~l~LCNSIGT~lD~kytd 433 (1189)
T KOG2041|consen 361 YGIMFWDTKTNEKTVKT-------VTHFENMAFYREHCVLINRQDDGVIPEYSTLENRSRVYFLQLCNSIGTSLDYKYTD 433 (1189)
T ss_pred eEEEEEecccChhhhhh-------hcceeehheecccEEEEeccccCCCcchhhhhcccceEEEeeecccCCcCCCCcce
Confidence 45667777654321111 1334456666666666666677777665322111111110 0000000111112
Q ss_pred EEEEEEcCCCCEEEEEeCcCeEEEEECCCCcee-------------------------eee--------ecCCCeEEEEE
Q 003579 477 VVGVACDSTNTLMISAGYHGDIKVWDFKGRDLK-------------------------SRW--------EVGCSLVKIVY 523 (809)
Q Consensus 477 v~~l~~~~~~~~l~s~~~dg~i~iwd~~~~~~~-------------------------~~~--------~~~~~i~~~~~ 523 (809)
|.-.-+.-++..++.++.+ .+.+|.+...+.. ..+ ....+|..++.
T Consensus 434 irP~Fv~vn~~~vviAS~e-~~~iWhy~~pK~~s~l~~~k~rkegr~h~Ddtp~ga~d~~l~ys~kt~~G~~DpICAl~~ 512 (1189)
T KOG2041|consen 434 IRPKFVCVNGICVVIASEE-RYFIWHYVLPKFNSVLAGVKIRKEGRFHGDDTPEGAQDRTLEYSTKTLLGSKDPICALCI 512 (1189)
T ss_pred eeeeEEEecceEEEEeccc-cEEEEEEeccchhhhhhhhhhcccccccCCCCccchhhceeeccceeeccCCCcceeeee
Confidence 2222222345566666664 5678865432111 011 11256666666
Q ss_pred eeCCCEEEEEeCCCeEEEEEcCCCeEEEEEecCCCCeeeEEECCCCCEEEEEeCCCeEEEEEcC---CccEEEEee-eC-
Q 003579 524 HRVNGLLATVADDLVIRLFDVVALRMVRKFEGHTDRITDFCFSEDGKWLLSSGMDGSLRIWDVI---LARQIDAIH-VD- 598 (809)
Q Consensus 524 s~~~~~la~~~~d~~I~v~d~~~~~~~~~~~~h~~~I~~l~fspdg~~l~s~s~D~~I~vwd~~---~~~~i~~~~-~~- 598 (809)
+ .+++.++-..|.|+-|.+...-+..... -...|..+...-+...++.-..-|.+.+.|+. +|..+..+. ..
T Consensus 513 s--dk~l~vareSG~I~rySl~nv~l~n~y~-~n~~~y~~~lNCnstRlAiId~~gv~tf~dLd~d~~g~ql~~~~~~er 589 (1189)
T KOG2041|consen 513 S--DKFLMVARESGGIYRYSLNNVVLTNSYP-VNPSIYSIKLNCNSTRLAIIDLVGVVTFQDLDYDFDGDQLKLIYTSER 589 (1189)
T ss_pred c--ceEEEEEeccCceEEEEecceeeeeccc-cCchheeEeeccCcchhhhhhhhceeeeeecccccCcceeeeeehhhh
Confidence 5 6788899999999999998776555443 34678899998888888887778888888886 466665443 33
Q ss_pred cceEEEEEcCCCCeEEEEEeCCCeEEEeecCcccCCCCC
Q 003579 599 VSITALSLSPNMDVLATAHVDQNGVYLWVNRCMFSGDSN 637 (809)
Q Consensus 599 ~~v~~l~~spdg~~lat~~~d~~~i~lW~~~~~~~~~~~ 637 (809)
..|+.+.|..|+..|..--... .+++++....-.|++.
T Consensus 590 rDVWd~~Wa~dNp~llAlmeKt-rmyifrgndpeEp~s~ 627 (1189)
T KOG2041|consen 590 RDVWDYEWAQDNPNLLALMEKT-RMYIFRGNDPEEPSSV 627 (1189)
T ss_pred hhhhhhhhccCCchHHhhhhhc-eEEEecCcCccccccc
Confidence 3499999999887666555444 4999988766666653
No 244
>COG2706 3-carboxymuconate cyclase [Carbohydrate transport and metabolism]
Probab=99.54 E-value=6.3e-11 Score=115.39 Aligned_cols=273 Identities=14% Similarity=0.234 Sum_probs=189.7
Q ss_pred CCcEEEEEeeCCCCCceeEEeccCCCCCCeeEEEecCCCEEEEEECC---CCEEEEEeeec-ccceecchhhHHHHHhhc
Q 003579 289 DNSIKMWIFDTTDGDPRLLRFRSGHSAPPLCIRFYANGRHILSAGQD---RAFRLFSVIQD-QQSRELSQRHVAKRARKL 364 (809)
Q Consensus 289 d~~i~vw~~~~~~~~~~~~~~~~~h~~~v~~i~~~~~~~~l~s~~~d---g~i~~wd~~~~-~~~~~~~~~~~~~~~~~~ 364 (809)
+.-|.+|++++..+....+.. ..+...++-++++|++++|.++..+ |.+..|.+... .....+
T Consensus 15 s~gI~v~~ld~~~g~l~~~~~-v~~~~nptyl~~~~~~~~LY~v~~~~~~ggvaay~iD~~~G~Lt~l------------ 81 (346)
T COG2706 15 SQGIYVFNLDTKTGELSLLQL-VAELGNPTYLAVNPDQRHLYVVNEPGEEGGVAAYRIDPDDGRLTFL------------ 81 (346)
T ss_pred CCceEEEEEeCcccccchhhh-ccccCCCceEEECCCCCEEEEEEecCCcCcEEEEEEcCCCCeEEEe------------
Confidence 567999999977765444433 3567788999999999999988655 55666665432 111111
Q ss_pred cchhhhhccCceeEEeeccccccccceeEEeecCCceEEEEEeeeeeecceeeecCCCCCCCeEEEEEcCCCCEEEEEe-
Q 003579 365 KMKEEELKLKPVIAFDCAEIRERDWCNVVTCHMDTAQAYVWRLQNFVLGEHILRPCPENPTAVKACTISACGNFAVLGT- 443 (809)
Q Consensus 365 ~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~v~~v~~s~~g~~l~~g~- 443 (809)
+ .......+.+.++++++|++++++.
T Consensus 82 -----------------------------------------n------------~~~~~g~~p~yvsvd~~g~~vf~AnY 108 (346)
T COG2706 82 -----------------------------------------N------------RQTLPGSPPCYVSVDEDGRFVFVANY 108 (346)
T ss_pred -----------------------------------------e------------ccccCCCCCeEEEECCCCCEEEEEEc
Confidence 0 0001113448899999999998875
Q ss_pred CCCcEEEEECCC-CceeeeeeCcccccccCcccc----------EEEEEEcCCCCEEEEEeC-cCeEEEEECCCCceeee
Q 003579 444 AGGWIERFNLQS-GISRGSYLDMSERSNYAHNGE----------VVGVACDSTNTLMISAGY-HGDIKVWDFKGRDLKSR 511 (809)
Q Consensus 444 ~~g~i~i~~~~~-~~~~~~~~~~~~~~~~~h~~~----------v~~l~~~~~~~~l~s~~~-dg~i~iwd~~~~~~~~~ 511 (809)
..|.|.++-++. |........ ..|.+. +....+.|++++|+++.. --.|.+|++..+++...
T Consensus 109 ~~g~v~v~p~~~dG~l~~~v~~------~~h~g~~p~~rQ~~~h~H~a~~tP~~~~l~v~DLG~Dri~~y~~~dg~L~~~ 182 (346)
T COG2706 109 HSGSVSVYPLQADGSLQPVVQV------VKHTGSGPHERQESPHVHSANFTPDGRYLVVPDLGTDRIFLYDLDDGKLTPA 182 (346)
T ss_pred cCceEEEEEcccCCccccceee------eecCCCCCCccccCCccceeeeCCCCCEEEEeecCCceEEEEEcccCccccc
Confidence 458999999966 443332211 123333 788899999999998873 34699999998876543
Q ss_pred e----ecCCCeEEEEEeeCCCEEEEEeC-CCeEEEEEcCCC-eEEEEEec---------CCCCeeeEEECCCCCEEEEEe
Q 003579 512 W----EVGCSLVKIVYHRVNGLLATVAD-DLVIRLFDVVAL-RMVRKFEG---------HTDRITDFCFSEDGKWLLSSG 576 (809)
Q Consensus 512 ~----~~~~~i~~~~~s~~~~~la~~~~-d~~I~v~d~~~~-~~~~~~~~---------h~~~I~~l~fspdg~~l~s~s 576 (809)
- +.+.....++|||++++..+.++ +++|-+|..+.. ..+..++. -.....+|..+||||+|.++.
T Consensus 183 ~~~~v~~G~GPRHi~FHpn~k~aY~v~EL~stV~v~~y~~~~g~~~~lQ~i~tlP~dF~g~~~~aaIhis~dGrFLYasN 262 (346)
T COG2706 183 DPAEVKPGAGPRHIVFHPNGKYAYLVNELNSTVDVLEYNPAVGKFEELQTIDTLPEDFTGTNWAAAIHISPDGRFLYASN 262 (346)
T ss_pred cccccCCCCCcceEEEcCCCcEEEEEeccCCEEEEEEEcCCCceEEEeeeeccCccccCCCCceeEEEECCCCCEEEEec
Confidence 3 44588899999999999888776 899999998873 22333322 234567899999999998775
Q ss_pred C-CCeEEEEEcCCc-cEEEEe---eeCcc-eEEEEEcCCCCeEEEEEeCCCeEEEeecCcccC
Q 003579 577 M-DGSLRIWDVILA-RQIDAI---HVDVS-ITALSLSPNMDVLATAHVDQNGVYLWVNRCMFS 633 (809)
Q Consensus 577 ~-D~~I~vwd~~~~-~~i~~~---~~~~~-v~~l~~spdg~~lat~~~d~~~i~lW~~~~~~~ 633 (809)
. ...|-++.+... ..+... ..+.. .....|+|+|++|+.++.++..|.++.....-.
T Consensus 263 Rg~dsI~~f~V~~~~g~L~~~~~~~teg~~PR~F~i~~~g~~Liaa~q~sd~i~vf~~d~~TG 325 (346)
T COG2706 263 RGHDSIAVFSVDPDGGKLELVGITPTEGQFPRDFNINPSGRFLIAANQKSDNITVFERDKETG 325 (346)
T ss_pred CCCCeEEEEEEcCCCCEEEEEEEeccCCcCCccceeCCCCCEEEEEccCCCcEEEEEEcCCCc
Confidence 2 336888877542 223222 22333 889999999999999999988899998764443
No 245
>PRK02889 tolB translocation protein TolB; Provisional
Probab=99.53 E-value=1.4e-12 Score=141.30 Aligned_cols=178 Identities=15% Similarity=0.141 Sum_probs=123.2
Q ss_pred CeEEEEeCCCCceEEEEcCCCCCEEEEEEcCCCCEEEEEeCC---CeEEEEEeeCCeEEEEEeccCCCcEEEEEEecCCC
Q 003579 161 GSLQLWNISTKKKLYEFKGWGSSISSCVSSPALDVVAVGCSD---GKIHVHNVRYDEELVTFTHSMRGAVTALAFSSDGQ 237 (809)
Q Consensus 161 g~i~lwd~~~~~~~~~~~~~~~~I~~l~~sp~~~~la~g~~d---g~i~iwd~~~~~~~~~~~~~~~~~V~~l~fs~dg~ 237 (809)
..|.++|. +|+....+..+...+.+.+|+|||+.|+..+.+ ..|.+||+.+++... +... .+.+.+.+|+|||+
T Consensus 176 ~~L~~~D~-dG~~~~~l~~~~~~v~~p~wSPDG~~la~~s~~~~~~~I~~~dl~~g~~~~-l~~~-~g~~~~~~~SPDG~ 252 (427)
T PRK02889 176 YQLQISDA-DGQNAQSALSSPEPIISPAWSPDGTKLAYVSFESKKPVVYVHDLATGRRRV-VANF-KGSNSAPAWSPDGR 252 (427)
T ss_pred cEEEEECC-CCCCceEeccCCCCcccceEcCCCCEEEEEEccCCCcEEEEEECCCCCEEE-eecC-CCCccceEECCCCC
Confidence 36777786 455555666778899999999999999887643 469999999887543 3222 45677899999998
Q ss_pred CEEEEEcCCCcEEEE--ECCCceeeeeeecccccceEEEEEecCCCEEEEEcC-CCcEEEEEeeCCCCCceeEEeccCCC
Q 003579 238 PLLASGASSGVISIW--NLEKRRLQSVIREAHDNAIISLHFFANEPVLMSASA-DNSIKMWIFDTTDGDPRLLRFRSGHS 314 (809)
Q Consensus 238 ~~lasg~~dg~I~iw--dl~~~~~~~~~~~~h~~~V~~l~~~~~~~~l~s~s~-d~~i~vw~~~~~~~~~~~~~~~~~h~ 314 (809)
.++++.+.+|...|| |+.++. ...+. .+........|+|||+.|+..+. ++...+|.++...+..+.+. ..+
T Consensus 253 ~la~~~~~~g~~~Iy~~d~~~~~-~~~lt-~~~~~~~~~~wSpDG~~l~f~s~~~g~~~Iy~~~~~~g~~~~lt-~~g-- 327 (427)
T PRK02889 253 TLAVALSRDGNSQIYTVNADGSG-LRRLT-QSSGIDTEPFFSPDGRSIYFTSDRGGAPQIYRMPASGGAAQRVT-FTG-- 327 (427)
T ss_pred EEEEEEccCCCceEEEEECCCCC-cEECC-CCCCCCcCeEEcCCCCEEEEEecCCCCcEEEEEECCCCceEEEe-cCC--
Confidence 555567777775555 555554 33443 35555677899999998776554 57888998876554433332 222
Q ss_pred CCCeeEEEecCCCEEEEEECCC---CEEEEEeeec
Q 003579 315 APPLCIRFYANGRHILSAGQDR---AFRLFSVIQD 346 (809)
Q Consensus 315 ~~v~~i~~~~~~~~l~s~~~dg---~i~~wd~~~~ 346 (809)
.......|+|||++|+..+.++ .|.+||+.++
T Consensus 328 ~~~~~~~~SpDG~~Ia~~s~~~g~~~I~v~d~~~g 362 (427)
T PRK02889 328 SYNTSPRISPDGKLLAYISRVGGAFKLYVQDLATG 362 (427)
T ss_pred CCcCceEECCCCCEEEEEEccCCcEEEEEEECCCC
Confidence 2334678999999998777654 4777776543
No 246
>PF08662 eIF2A: Eukaryotic translation initiation factor eIF2A; InterPro: IPR013979 This entry contains beta propellor domains found in eukaryotic translation initiation factors and TolB domain-containing proteins.
Probab=99.53 E-value=9e-13 Score=125.16 Aligned_cols=148 Identities=20% Similarity=0.354 Sum_probs=111.1
Q ss_pred EEEEEcCCCCEEEEEeC----------cCeEEEEECC-CCceeeeeec--CCCeEEEEEeeCCCEEEEEe--CCCeEEEE
Q 003579 478 VGVACDSTNTLMISAGY----------HGDIKVWDFK-GRDLKSRWEV--GCSLVKIVYHRVNGLLATVA--DDLVIRLF 542 (809)
Q Consensus 478 ~~l~~~~~~~~l~s~~~----------dg~i~iwd~~-~~~~~~~~~~--~~~i~~~~~s~~~~~la~~~--~d~~I~v~ 542 (809)
..+.|+++|.+|+.-.. -|...+|.++ .......+.. ..+|..++|+|+|+.+|+.. .+..|.+|
T Consensus 9 ~~~~W~~~G~~l~~~~~~~~~~~~ks~~~~~~l~~~~~~~~~~~~i~l~~~~~I~~~~WsP~g~~favi~g~~~~~v~ly 88 (194)
T PF08662_consen 9 AKLHWQPSGDYLLVKVQTRVDKSGKSYYGEFELFYLNEKNIPVESIELKKEGPIHDVAWSPNGNEFAVIYGSMPAKVTLY 88 (194)
T ss_pred EEEEecccCCEEEEEEEEeeccCcceEEeeEEEEEEecCCCccceeeccCCCceEEEEECcCCCEEEEEEccCCcccEEE
Confidence 45778888876664432 1334455542 2234444443 35799999999999876653 56799999
Q ss_pred EcCCCeEEEEEecCCCCeeeEEECCCCCEEEEEeC---CCeEEEEEcCCccEEEEeeeCcceEEEEEcCCCCeEEEEEeC
Q 003579 543 DVVALRMVRKFEGHTDRITDFCFSEDGKWLLSSGM---DGSLRIWDVILARQIDAIHVDVSITALSLSPNMDVLATAHVD 619 (809)
Q Consensus 543 d~~~~~~~~~~~~h~~~I~~l~fspdg~~l~s~s~---D~~I~vwd~~~~~~i~~~~~~~~v~~l~~spdg~~lat~~~d 619 (809)
|++ ++.+..+. ...++.+.|||+|++|++++. .|.|.+||+.+.+.+..+.+. .++.++|||||++|+++...
T Consensus 89 d~~-~~~i~~~~--~~~~n~i~wsP~G~~l~~~g~~n~~G~l~~wd~~~~~~i~~~~~~-~~t~~~WsPdGr~~~ta~t~ 164 (194)
T PF08662_consen 89 DVK-GKKIFSFG--TQPRNTISWSPDGRFLVLAGFGNLNGDLEFWDVRKKKKISTFEHS-DATDVEWSPDGRYLATATTS 164 (194)
T ss_pred cCc-ccEeEeec--CCCceEEEECCCCCEEEEEEccCCCcEEEEEECCCCEEeeccccC-cEEEEEEcCCCCEEEEEEec
Confidence 997 66666664 567889999999999999874 467999999999998887654 47899999999999999863
Q ss_pred -----CCeEEEeecC
Q 003579 620 -----QNGVYLWVNR 629 (809)
Q Consensus 620 -----~~~i~lW~~~ 629 (809)
+++++||+..
T Consensus 165 ~r~~~dng~~Iw~~~ 179 (194)
T PF08662_consen 165 PRLRVDNGFKIWSFQ 179 (194)
T ss_pred cceeccccEEEEEec
Confidence 3479999964
No 247
>KOG1409 consensus Uncharacterized conserved protein, contains WD40 repeats and FYVE domains [Function unknown]
Probab=99.53 E-value=7.9e-13 Score=126.36 Aligned_cols=336 Identities=15% Similarity=0.192 Sum_probs=223.8
Q ss_pred CceEEEEcCCCCCEEEEEEcCCCCEEEEEeCCCeEEEEEe-eCCeEEEEEeccCCCcEEEEEEecCCCCEEEEEcCCCcE
Q 003579 171 KKKLYEFKGWGSSISSCVSSPALDVVAVGCSDGKIHVHNV-RYDEELVTFTHSMRGAVTALAFSSDGQPLLASGASSGVI 249 (809)
Q Consensus 171 ~~~~~~~~~~~~~I~~l~~sp~~~~la~g~~dg~i~iwd~-~~~~~~~~~~~~~~~~V~~l~fs~dg~~~lasg~~dg~I 249 (809)
..+++.++||...|+....-|...-+.+.+.|.+++||-- ..++.-..+.+....+++++++.++.. .|++|-.+|++
T Consensus 14 p~ll~~~eG~~d~vn~~~l~~~e~gv~~~s~drtvrv~lkrds~q~wpsI~~~mP~~~~~~~y~~e~~-~L~vg~~ngtv 92 (404)
T KOG1409|consen 14 PELLSKIEGSQDDVNAAILIPKEEGVISVSEDRTVRVWLKRDSGQYWPSIYHYMPSPCSAMEYVSESR-RLYVGQDNGTV 92 (404)
T ss_pred hhhhhhhcCchhhhhhheeccCCCCeEEccccceeeeEEeccccccCchhhhhCCCCceEeeeeccce-EEEEEEecceE
Confidence 3456678899999999988898888999999999999953 455655555555568999999999988 89999999999
Q ss_pred EEEECCCc----eeeeeeecccccceEEEEEecCCCEEEEEcCCCcEEEEEeeCCCCCceeEEeccCCCCCCeeEEEecC
Q 003579 250 SIWNLEKR----RLQSVIREAHDNAIISLHFFANEPVLMSASADNSIKMWIFDTTDGDPRLLRFRSGHSAPPLCIRFYAN 325 (809)
Q Consensus 250 ~iwdl~~~----~~~~~~~~~h~~~V~~l~~~~~~~~l~s~s~d~~i~vw~~~~~~~~~~~~~~~~~h~~~v~~i~~~~~ 325 (809)
.-+.+... ...+... .|...+..+-|+-...++++.+.|..+.---.+.+......... .+.+++.+.-.
T Consensus 93 tefs~sedfnkm~~~r~~~-~h~~~v~~~if~~~~e~V~s~~~dk~~~~hc~e~~~~lg~Y~~~-----~~~t~~~~d~~ 166 (404)
T KOG1409|consen 93 TEFALSEDFNKMTFLKDYL-AHQARVSAIVFSLTHEWVLSTGKDKQFAWHCTESGNRLGGYNFE-----TPASALQFDAL 166 (404)
T ss_pred EEEEhhhhhhhcchhhhhh-hhhcceeeEEecCCceeEEEeccccceEEEeeccCCcccceEee-----ccCCCCceeeE
Confidence 98876543 3444444 89999999999998889999999987653322222211111110 11111111111
Q ss_pred CCEEEEEECCCCEEEEEeeecccceecchhhHHHHHhhccchhhhhccCceeEEeeccccccccceeEEeecCCceEEEE
Q 003579 326 GRHILSAGQDRAFRLFSVIQDQQSRELSQRHVAKRARKLKMKEEELKLKPVIAFDCAEIRERDWCNVVTCHMDTAQAYVW 405 (809)
Q Consensus 326 ~~~l~s~~~dg~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~w 405 (809)
+...|...|.+....+....
T Consensus 167 --~~fvGd~~gqvt~lr~~~~~---------------------------------------------------------- 186 (404)
T KOG1409|consen 167 --YAFVGDHSGQITMLKLEQNG---------------------------------------------------------- 186 (404)
T ss_pred --EEEecccccceEEEEEeecC----------------------------------------------------------
Confidence 33344444444444332211
Q ss_pred EeeeeeecceeeecCCCCCCCeEEEEEcCCCCEEEEEeCCCcEEEEECCCCceeeeeeCcccccccCccccEEEEEEcCC
Q 003579 406 RLQNFVLGEHILRPCPENPTAVKACTISACGNFAVLGTAGGWIERFNLQSGISRGSYLDMSERSNYAHNGEVVGVACDST 485 (809)
Q Consensus 406 ~~~~~~~~~~~~~~~~~~~~~v~~v~~s~~g~~l~~g~~~g~i~i~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~ 485 (809)
-..+....+|...+++++|.+....+.+|.+|..+.+||+.......... .+|...|..+...+-
T Consensus 187 --------~~~i~~~~~h~~~~~~l~Wd~~~~~LfSg~~d~~vi~wdigg~~g~~~el-------~gh~~kV~~l~~~~~ 251 (404)
T KOG1409|consen 187 --------CQLITTFNGHTGEVTCLKWDPGQRLLFSGASDHSVIMWDIGGRKGTAYEL-------QGHNDKVQALSYAQH 251 (404)
T ss_pred --------CceEEEEcCcccceEEEEEcCCCcEEEeccccCceEEEeccCCcceeeee-------ccchhhhhhhhhhhh
Confidence 11122233567899999999999999999999999999998776655443 599999999999888
Q ss_pred CCEEEEEeCcCeEEEEECCCCceee------------------------------eeecC----CCeEEEEEeeCCCEEE
Q 003579 486 NTLMISAGYHGDIKVWDFKGRDLKS------------------------------RWEVG----CSLVKIVYHRVNGLLA 531 (809)
Q Consensus 486 ~~~l~s~~~dg~i~iwd~~~~~~~~------------------------------~~~~~----~~i~~~~~s~~~~~la 531 (809)
-+.+++++.||.|.+|+.+...... ...++ +...+..-+.......
T Consensus 252 t~~l~S~~edg~i~~w~mn~~r~etpewl~s~~cQ~c~qpffwn~~~m~~~k~~glr~h~crkcg~avc~~c~s~~~~~p 331 (404)
T KOG1409|consen 252 TRQLISCGEDGGIVVWNMNVKRVETPEWLDSDSCQKCNQPFFWNFRQMWDRKQLGLRQHHCRKCGKAVCGKCSSNRSSYP 331 (404)
T ss_pred heeeeeccCCCeEEEEeccceeecCccccccchhhhhCchHHHHHHHHHhhhhhhhhhhhhhhhhhhcCcccccCccccc
Confidence 8999999999999999987432110 00011 1111111122222222
Q ss_pred EEeCCCeEEEEEcCC-------CeEEEEEecCCCCeeeEEECCCCCEEEEEeCCCeEEEEEcCC
Q 003579 532 TVADDLVIRLFDVVA-------LRMVRKFEGHTDRITDFCFSEDGKWLLSSGMDGSLRIWDVIL 588 (809)
Q Consensus 532 ~~~~d~~I~v~d~~~-------~~~~~~~~~h~~~I~~l~fspdg~~l~s~s~D~~I~vwd~~~ 588 (809)
+.+....+|+-|.-- ...+..+..-...|+.+.+..+-.+|+|++.|+.|+|||+..
T Consensus 332 ~mg~e~~vR~~~~c~~~i~~~~~t~LA~phei~tgItamhlqetlglLvTsG~~Rvi~iwd~~~ 395 (404)
T KOG1409|consen 332 TMGFEFSVRVCDSCYPTIKDEERTPLAIPHEIKTGITAMHLQETLGLLVTSGTDRVIKIWDVRS 395 (404)
T ss_pred cccceeEEEEecccchhhhcCCCCccccccccccceeEEEhhhhccceeecCCceEEEEEechh
Confidence 223334555544321 123444443345699999998888999999999999999864
No 248
>PRK04922 tolB translocation protein TolB; Provisional
Probab=99.52 E-value=1.7e-12 Score=141.28 Aligned_cols=178 Identities=16% Similarity=0.137 Sum_probs=123.9
Q ss_pred CeEEEEeCCCCceEEEEcCCCCCEEEEEEcCCCCEEEEEeCC---CeEEEEEeeCCeEEEEEeccCCCcEEEEEEecCCC
Q 003579 161 GSLQLWNISTKKKLYEFKGWGSSISSCVSSPALDVVAVGCSD---GKIHVHNVRYDEELVTFTHSMRGAVTALAFSSDGQ 237 (809)
Q Consensus 161 g~i~lwd~~~~~~~~~~~~~~~~I~~l~~sp~~~~la~g~~d---g~i~iwd~~~~~~~~~~~~~~~~~V~~l~fs~dg~ 237 (809)
..|.+||.. +...+.+..+...+.+.+|+||++.|+..+.+ ..|.+||+.+++.... ... .+...+.+|+|||+
T Consensus 184 ~~l~i~D~~-g~~~~~lt~~~~~v~~p~wSpDg~~la~~s~~~~~~~l~~~dl~~g~~~~l-~~~-~g~~~~~~~SpDG~ 260 (433)
T PRK04922 184 YALQVADSD-GYNPQTILRSAEPILSPAWSPDGKKLAYVSFERGRSAIYVQDLATGQRELV-ASF-RGINGAPSFSPDGR 260 (433)
T ss_pred EEEEEECCC-CCCceEeecCCCccccccCCCCCCEEEEEecCCCCcEEEEEECCCCCEEEe-ccC-CCCccCceECCCCC
Confidence 368999985 44455566677889999999999999987643 4799999988765432 222 44566899999999
Q ss_pred CEEEEEcCCC--cEEEEECCCceeeeeeecccccceEEEEEecCCCEEEEEc-CCCcEEEEEeeCCCCCceeEEeccCCC
Q 003579 238 PLLASGASSG--VISIWNLEKRRLQSVIREAHDNAIISLHFFANEPVLMSAS-ADNSIKMWIFDTTDGDPRLLRFRSGHS 314 (809)
Q Consensus 238 ~~lasg~~dg--~I~iwdl~~~~~~~~~~~~h~~~V~~l~~~~~~~~l~s~s-~d~~i~vw~~~~~~~~~~~~~~~~~h~ 314 (809)
.++++.+.+| .|.+||+.+++... +. .+.......+|+||++.|+.++ .++...+|.++..++..+.+. . +.
T Consensus 261 ~l~~~~s~~g~~~Iy~~d~~~g~~~~-lt-~~~~~~~~~~~spDG~~l~f~sd~~g~~~iy~~dl~~g~~~~lt-~--~g 335 (433)
T PRK04922 261 RLALTLSRDGNPEIYVMDLGSRQLTR-LT-NHFGIDTEPTWAPDGKSIYFTSDRGGRPQIYRVAASGGSAERLT-F--QG 335 (433)
T ss_pred EEEEEEeCCCCceEEEEECCCCCeEE-Cc-cCCCCccceEECCCCCEEEEEECCCCCceEEEEECCCCCeEEee-c--CC
Confidence 5555656555 69999999887543 33 4555567889999999887766 456666776665444333332 2 22
Q ss_pred CCCeeEEEecCCCEEEEEECCC---CEEEEEeeec
Q 003579 315 APPLCIRFYANGRHILSAGQDR---AFRLFSVIQD 346 (809)
Q Consensus 315 ~~v~~i~~~~~~~~l~s~~~dg---~i~~wd~~~~ 346 (809)
......+|+|||++|+..+.++ .|.+|++.++
T Consensus 336 ~~~~~~~~SpDG~~Ia~~~~~~~~~~I~v~d~~~g 370 (433)
T PRK04922 336 NYNARASVSPDGKKIAMVHGSGGQYRIAVMDLSTG 370 (433)
T ss_pred CCccCEEECCCCCEEEEEECCCCceeEEEEECCCC
Confidence 3345789999999998765443 4777776443
No 249
>PRK02889 tolB translocation protein TolB; Provisional
Probab=99.51 E-value=6e-12 Score=136.47 Aligned_cols=239 Identities=12% Similarity=0.104 Sum_probs=154.0
Q ss_pred CeEEEEEeeCCeEEEEEeccCCCcEEEEEEecCCCCEEEEEc-C--CCcEEEEECCCceeeeeeecccccceEEEEEecC
Q 003579 203 GKIHVHNVRYDEELVTFTHSMRGAVTALAFSSDGQPLLASGA-S--SGVISIWNLEKRRLQSVIREAHDNAIISLHFFAN 279 (809)
Q Consensus 203 g~i~iwd~~~~~~~~~~~~~~~~~V~~l~fs~dg~~~lasg~-~--dg~I~iwdl~~~~~~~~~~~~h~~~V~~l~~~~~ 279 (809)
..|.++|.. +.....+..+ ...+.+.+|+|||+ .|+..+ . ...|.+||+.+++.... . ...+.+.+..|+||
T Consensus 176 ~~L~~~D~d-G~~~~~l~~~-~~~v~~p~wSPDG~-~la~~s~~~~~~~I~~~dl~~g~~~~l-~-~~~g~~~~~~~SPD 250 (427)
T PRK02889 176 YQLQISDAD-GQNAQSALSS-PEPIISPAWSPDGT-KLAYVSFESKKPVVYVHDLATGRRRVV-A-NFKGSNSAPAWSPD 250 (427)
T ss_pred cEEEEECCC-CCCceEeccC-CCCcccceEcCCCC-EEEEEEccCCCcEEEEEECCCCCEEEe-e-cCCCCccceEECCC
Confidence 457777764 4444444443 57899999999998 555544 2 24699999998865433 2 23455678999999
Q ss_pred CCEEE-EEcCCCcEEEEEeeCCCCCceeEEeccCCCCCCeeEEEecCCCEEEEEEC-CCCEEEEEeeecccceecchhhH
Q 003579 280 EPVLM-SASADNSIKMWIFDTTDGDPRLLRFRSGHSAPPLCIRFYANGRHILSAGQ-DRAFRLFSVIQDQQSRELSQRHV 357 (809)
Q Consensus 280 ~~~l~-s~s~d~~i~vw~~~~~~~~~~~~~~~~~h~~~v~~i~~~~~~~~l~s~~~-dg~i~~wd~~~~~~~~~~~~~~~ 357 (809)
++.|+ +.+.++...+|.++...+.. +.+..+........|+|||+.|+..+. ++...+|.+....
T Consensus 251 G~~la~~~~~~g~~~Iy~~d~~~~~~---~~lt~~~~~~~~~~wSpDG~~l~f~s~~~g~~~Iy~~~~~~---------- 317 (427)
T PRK02889 251 GRTLAVALSRDGNSQIYTVNADGSGL---RRLTQSSGIDTEPFFSPDGRSIYFTSDRGGAPQIYRMPASG---------- 317 (427)
T ss_pred CCEEEEEEccCCCceEEEEECCCCCc---EECCCCCCCCcCeEEcCCCCEEEEEecCCCCcEEEEEECCC----------
Confidence 98776 56778989999887654432 333445555677889999998886654 4555565542110
Q ss_pred HHHHhhccchhhhhccCceeEEeeccccccccceeEEeecCCceEEEEEeeeeeecceeeecCCCCCCCeEEEEEcCCCC
Q 003579 358 AKRARKLKMKEEELKLKPVIAFDCAEIRERDWCNVVTCHMDTAQAYVWRLQNFVLGEHILRPCPENPTAVKACTISACGN 437 (809)
Q Consensus 358 ~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~v~~v~~s~~g~ 437 (809)
T Consensus 318 -------------------------------------------------------------------------------- 317 (427)
T PRK02889 318 -------------------------------------------------------------------------------- 317 (427)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred EEEEEeCCCcEEEEECCCCceeeeeeCcccccccCccccEEEEEEcCCCCEEEEEeCcC---eEEEEECCCCceeeeeec
Q 003579 438 FAVLGTAGGWIERFNLQSGISRGSYLDMSERSNYAHNGEVVGVACDSTNTLMISAGYHG---DIKVWDFKGRDLKSRWEV 514 (809)
Q Consensus 438 ~l~~g~~~g~i~i~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~l~s~~~dg---~i~iwd~~~~~~~~~~~~ 514 (809)
+...... .+.......+|+|+|++++..+.++ .|.+||+.+++..... .
T Consensus 318 ------------------g~~~~lt---------~~g~~~~~~~~SpDG~~Ia~~s~~~g~~~I~v~d~~~g~~~~lt-~ 369 (427)
T PRK02889 318 ------------------GAAQRVT---------FTGSYNTSPRISPDGKLLAYISRVGGAFKLYVQDLATGQVTALT-D 369 (427)
T ss_pred ------------------CceEEEe---------cCCCCcCceEECCCCCEEEEEEccCCcEEEEEEECCCCCeEEcc-C
Confidence 0000000 0001112346677777766555443 5888888877654332 2
Q ss_pred CCCeEEEEEeeCCCEEEEEeCCC---eEEEEEcCCCeEEEEEecCCCCeeeEEECCC
Q 003579 515 GCSLVKIVYHRVNGLLATVADDL---VIRLFDVVALRMVRKFEGHTDRITDFCFSED 568 (809)
Q Consensus 515 ~~~i~~~~~s~~~~~la~~~~d~---~I~v~d~~~~~~~~~~~~h~~~I~~l~fspd 568 (809)
........|+|||+.|+.++.++ .+++.+. +++..+.+..+.+.+...+|+|-
T Consensus 370 ~~~~~~p~~spdg~~l~~~~~~~g~~~l~~~~~-~g~~~~~l~~~~g~~~~p~wsp~ 425 (427)
T PRK02889 370 TTRDESPSFAPNGRYILYATQQGGRSVLAAVSS-DGRIKQRLSVQGGDVREPSWGPF 425 (427)
T ss_pred CCCccCceECCCCCEEEEEEecCCCEEEEEEEC-CCCceEEeecCCCCCCCCccCCC
Confidence 33346779999999998887654 4666677 46667777777788888999884
No 250
>PRK05137 tolB translocation protein TolB; Provisional
Probab=99.51 E-value=7.7e-12 Score=136.43 Aligned_cols=175 Identities=13% Similarity=0.118 Sum_probs=122.2
Q ss_pred CeEEEEeCCCCceEEEEcCCCCCEEEEEEcCCCCEEEEEeC---CCeEEEEEeeCCeEEEEEeccCCCcEEEEEEecCCC
Q 003579 161 GSLQLWNISTKKKLYEFKGWGSSISSCVSSPALDVVAVGCS---DGKIHVHNVRYDEELVTFTHSMRGAVTALAFSSDGQ 237 (809)
Q Consensus 161 g~i~lwd~~~~~~~~~~~~~~~~I~~l~~sp~~~~la~g~~---dg~i~iwd~~~~~~~~~~~~~~~~~V~~l~fs~dg~ 237 (809)
..|.++|.. +.....+..|...+.+.+|+|||+.|+..+. +..|.+||+.+++.. .+... .+.+.+.+|+|||+
T Consensus 182 ~~l~~~d~d-g~~~~~lt~~~~~v~~p~wSpDG~~lay~s~~~g~~~i~~~dl~~g~~~-~l~~~-~g~~~~~~~SPDG~ 258 (435)
T PRK05137 182 KRLAIMDQD-GANVRYLTDGSSLVLTPRFSPNRQEITYMSYANGRPRVYLLDLETGQRE-LVGNF-PGMTFAPRFSPDGR 258 (435)
T ss_pred eEEEEECCC-CCCcEEEecCCCCeEeeEECCCCCEEEEEEecCCCCEEEEEECCCCcEE-EeecC-CCcccCcEECCCCC
Confidence 378899974 4555667778889999999999999988763 468999999888653 33332 56788999999999
Q ss_pred CEEEEEcCCCc--EEEEECCCceeeeeeecccccceEEEEEecCCCEEEEEc-CCCcEEEEEeeCCCCCceeEEeccCCC
Q 003579 238 PLLASGASSGV--ISIWNLEKRRLQSVIREAHDNAIISLHFFANEPVLMSAS-ADNSIKMWIFDTTDGDPRLLRFRSGHS 314 (809)
Q Consensus 238 ~~lasg~~dg~--I~iwdl~~~~~~~~~~~~h~~~V~~l~~~~~~~~l~s~s-~d~~i~vw~~~~~~~~~~~~~~~~~h~ 314 (809)
.++++.+.+|. |.+||+.++.... +. .+........|+||++.|+..+ .++...+|.++...+..+.+. .+.
T Consensus 259 ~la~~~~~~g~~~Iy~~d~~~~~~~~-Lt-~~~~~~~~~~~spDG~~i~f~s~~~g~~~Iy~~d~~g~~~~~lt---~~~ 333 (435)
T PRK05137 259 KVVMSLSQGGNTDIYTMDLRSGTTTR-LT-DSPAIDTSPSYSPDGSQIVFESDRSGSPQLYVMNADGSNPRRIS---FGG 333 (435)
T ss_pred EEEEEEecCCCceEEEEECCCCceEE-cc-CCCCccCceeEcCCCCEEEEEECCCCCCeEEEEECCCCCeEEee---cCC
Confidence 55566665554 8888998876544 33 4556677899999999887766 345445555554443333332 233
Q ss_pred CCCeeEEEecCCCEEEEEECCC---CEEEEEe
Q 003579 315 APPLCIRFYANGRHILSAGQDR---AFRLFSV 343 (809)
Q Consensus 315 ~~v~~i~~~~~~~~l~s~~~dg---~i~~wd~ 343 (809)
..+....|+|+|+.|+..+.++ .|.+|++
T Consensus 334 ~~~~~~~~SpdG~~ia~~~~~~~~~~i~~~d~ 365 (435)
T PRK05137 334 GRYSTPVWSPRGDLIAFTKQGGGQFSIGVMKP 365 (435)
T ss_pred CcccCeEECCCCCEEEEEEcCCCceEEEEEEC
Confidence 4466788999999998776542 3555554
No 251
>COG5354 Uncharacterized protein, contains Trp-Asp (WD) repeat [General function prediction only]
Probab=99.50 E-value=4.3e-11 Score=120.60 Aligned_cols=334 Identities=15% Similarity=0.213 Sum_probs=219.1
Q ss_pred EEEEeeCCeEEEEEeccCCCcEEEEEEecCCCCEEEEEcCCCcEEEEECCCceeeeeeecccccceEEEEEecCCCEEEE
Q 003579 206 HVHNVRYDEELVTFTHSMRGAVTALAFSSDGQPLLASGASSGVISIWNLEKRRLQSVIREAHDNAIISLHFFANEPVLMS 285 (809)
Q Consensus 206 ~iwd~~~~~~~~~~~~~~~~~V~~l~fs~dg~~~lasg~~dg~I~iwdl~~~~~~~~~~~~h~~~V~~l~~~~~~~~l~s 285 (809)
..|+-.+...-..+.. ..-++...+|||.|. +|++... ..|.+|.-.....+..+. | ..|..+.|+|++++|++
T Consensus 15 ~f~~~~s~~~~~~~~~-~~~p~~~~~~SP~G~-~l~~~~~-~~V~~~~g~~~~~l~~~~--~-~~V~~~~fSP~~kYL~t 88 (561)
T COG5354 15 VFWNSQSEVIHTRFES-ENWPVAYVSESPLGT-YLFSEHA-AGVECWGGPSKAKLVRFR--H-PDVKYLDFSPNEKYLVT 88 (561)
T ss_pred EeecCccccccccccc-cCcchhheeecCcch-heehhhc-cceEEccccchhheeeee--c-CCceecccCcccceeee
Confidence 4455544444444443 256899999999999 7776554 459999988777555554 3 46899999999999998
Q ss_pred EcC---------------CCcEEEEEeeCCCCCceeEEeccCCCCC--Ce-eEEEecCCCEEEEEECCCCEEEEEeeecc
Q 003579 286 ASA---------------DNSIKMWIFDTTDGDPRLLRFRSGHSAP--PL-CIRFYANGRHILSAGQDRAFRLFSVIQDQ 347 (809)
Q Consensus 286 ~s~---------------d~~i~vw~~~~~~~~~~~~~~~~~h~~~--v~-~i~~~~~~~~l~s~~~dg~i~~wd~~~~~ 347 (809)
=+. ++.+.+||...+ .++..+.+-..+ .. -+.|+-+.++++-.. ...+.++++ ++.
T Consensus 89 w~~~pi~~pe~e~sp~~~~n~~~vwd~~sg----~iv~sf~~~~q~~~~Wp~~k~s~~D~y~ARvv-~~sl~i~e~-t~n 162 (561)
T COG5354 89 WSREPIIEPEIEISPFTSKNNVFVWDIASG----MIVFSFNGISQPYLGWPVLKFSIDDKYVARVV-GSSLYIHEI-TDN 162 (561)
T ss_pred eccCCccChhhccCCccccCceeEEeccCc----eeEeeccccCCcccccceeeeeecchhhhhhc-cCeEEEEec-CCc
Confidence 653 335889987765 677777666555 44 567777776666442 235788876 221
Q ss_pred cceecchhhHHHHHhhccchhhhhccCceeEEeeccccccccceeEEeecCCceEEEEEeeeeeecceeeecCCCCCCCe
Q 003579 348 QSRELSQRHVAKRARKLKMKEEELKLKPVIAFDCAEIRERDWCNVVTCHMDTAQAYVWRLQNFVLGEHILRPCPENPTAV 427 (809)
Q Consensus 348 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~v 427 (809)
.. .... ..++ ...+
T Consensus 163 ~~-~~p~--------------~~lr---------------------------------------------------~~gi 176 (561)
T COG5354 163 IE-EHPF--------------KNLR---------------------------------------------------PVGI 176 (561)
T ss_pred cc-cCch--------------hhcc---------------------------------------------------ccce
Confidence 11 0000 0000 1445
Q ss_pred EEEEEcCCCCE--EEE-----EeCCCcEEEEECCCCceeeeeeCcccccccCccccEEEEEEcCCCCEEEEEe-------
Q 003579 428 KACTISACGNF--AVL-----GTAGGWIERFNLQSGISRGSYLDMSERSNYAHNGEVVGVACDSTNTLMISAG------- 493 (809)
Q Consensus 428 ~~v~~s~~g~~--l~~-----g~~~g~i~i~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~l~s~~------- 493 (809)
....++|.|+. ++. +...+.+++|.+..+..+..-. -....=..+.|.+.|++++.--
T Consensus 177 ~dFsisP~~n~~~la~~tPEk~~kpa~~~i~sIp~~s~l~tk~--------lfk~~~~qLkW~~~g~~ll~l~~t~~ksn 248 (561)
T COG5354 177 LDFSISPEGNHDELAYWTPEKLNKPAMVRILSIPKNSVLVTKN--------LFKVSGVQLKWQVLGKYLLVLVMTHTKSN 248 (561)
T ss_pred eeEEecCCCCCceEEEEccccCCCCcEEEEEEccCCCeeeeee--------eEeecccEEEEecCCceEEEEEEEeeecc
Confidence 55566665432 222 3455678888887665554332 1222234566777777665321
Q ss_pred ----CcCeEEEEECCCCceeeeeecCCCeEEEEEeeCCCEEEEEe--CCCeEEEEEcCCCeEEEEEecCCCCeeeEEECC
Q 003579 494 ----YHGDIKVWDFKGRDLKSRWEVGCSLVKIVYHRVNGLLATVA--DDLVIRLFDVVALRMVRKFEGHTDRITDFCFSE 567 (809)
Q Consensus 494 ----~dg~i~iwd~~~~~~~~~~~~~~~i~~~~~s~~~~~la~~~--~d~~I~v~d~~~~~~~~~~~~h~~~I~~l~fsp 567 (809)
....++++++............++|...+|.|.++.+++.+ .+..+.++|++.. ++ +......=+.+.|||
T Consensus 249 KsyfgesnLyl~~~~e~~i~V~~~~~~pVhdf~W~p~S~~F~vi~g~~pa~~s~~~lr~N-l~--~~~Pe~~rNT~~fsp 325 (561)
T COG5354 249 KSYFGESNLYLLRITERSIPVEKDLKDPVHDFTWEPLSSRFAVISGYMPASVSVFDLRGN-LR--FYFPEQKRNTIFFSP 325 (561)
T ss_pred cceeccceEEEEeecccccceeccccccceeeeecccCCceeEEecccccceeecccccc-eE--EecCCcccccccccC
Confidence 23568888888665555556679999999999998777665 6788999999865 33 334455667789999
Q ss_pred CCCEEEEEeCC---CeEEEEEcCCccEEE-EeeeCcceEEEEEcCCCCeEEEEEeC-----CCeEEEeecC
Q 003579 568 DGKWLLSSGMD---GSLRIWDVILARQID-AIHVDVSITALSLSPNMDVLATAHVD-----QNGVYLWVNR 629 (809)
Q Consensus 568 dg~~l~s~s~D---~~I~vwd~~~~~~i~-~~~~~~~v~~l~~spdg~~lat~~~d-----~~~i~lW~~~ 629 (809)
.++|++.++-| |.|-+||......+. .+. ....+-+.|||||+|+-++... +++|.||++-
T Consensus 326 ~~r~il~agF~nl~gni~i~~~~~rf~~~~~~~-~~n~s~~~wspd~qF~~~~~ts~k~~~Dn~i~l~~v~ 395 (561)
T COG5354 326 HERYILFAGFDNLQGNIEIFDPAGRFKVAGAFN-GLNTSYCDWSPDGQFYDTDTTSEKLRVDNSIKLWDVY 395 (561)
T ss_pred cccEEEEecCCccccceEEeccCCceEEEEEee-cCCceEeeccCCceEEEecCCCcccccCcceEEEEec
Confidence 99999998865 679999987654444 333 3346677899999998887542 2379999974
No 252
>PRK05137 tolB translocation protein TolB; Provisional
Probab=99.50 E-value=8.7e-12 Score=136.00 Aligned_cols=233 Identities=15% Similarity=0.133 Sum_probs=155.9
Q ss_pred cEEEEEeeCCCCCceeEEeccCCCCCCeeEEEecCCCEEEEEEC---CCCEEEEEeeecccceecchhhHHHHHhhccch
Q 003579 291 SIKMWIFDTTDGDPRLLRFRSGHSAPPLCIRFYANGRHILSAGQ---DRAFRLFSVIQDQQSRELSQRHVAKRARKLKMK 367 (809)
Q Consensus 291 ~i~vw~~~~~~~~~~~~~~~~~h~~~v~~i~~~~~~~~l~s~~~---dg~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~ 367 (809)
.|.+||.+.. . .+.+..|...+.+.+|+|||+.|+..+. +..|.+|++.++... .+
T Consensus 183 ~l~~~d~dg~--~---~~~lt~~~~~v~~p~wSpDG~~lay~s~~~g~~~i~~~dl~~g~~~-~l--------------- 241 (435)
T PRK05137 183 RLAIMDQDGA--N---VRYLTDGSSLVLTPRFSPNRQEITYMSYANGRPRVYLLDLETGQRE-LV--------------- 241 (435)
T ss_pred EEEEECCCCC--C---cEEEecCCCCeEeeEECCCCCEEEEEEecCCCCEEEEEECCCCcEE-Ee---------------
Confidence 4555554332 2 2334467788999999999999887763 356888887544221 00
Q ss_pred hhhhccCceeEEeeccccccccceeEEeecCCceEEEEEeeeeeecceeeecCCCCCCCeEEEEEcCCCCEEEEE-eCCC
Q 003579 368 EEELKLKPVIAFDCAEIRERDWCNVVTCHMDTAQAYVWRLQNFVLGEHILRPCPENPTAVKACTISACGNFAVLG-TAGG 446 (809)
Q Consensus 368 ~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~v~~v~~s~~g~~l~~g-~~~g 446 (809)
. .....+.+.+|+|||+.++.. +.+|
T Consensus 242 --------------------------------------------------~---~~~g~~~~~~~SPDG~~la~~~~~~g 268 (435)
T PRK05137 242 --------------------------------------------------G---NFPGMTFAPRFSPDGRKVVMSLSQGG 268 (435)
T ss_pred --------------------------------------------------e---cCCCcccCcEECCCCCEEEEEEecCC
Confidence 0 112455678999999987654 4454
Q ss_pred --cEEEEECCCCceeeeeeCcccccccCccccEEEEEEcCCCCEEEEEeC-cC--eEEEEECCCCceeeeeecCCCeEEE
Q 003579 447 --WIERFNLQSGISRGSYLDMSERSNYAHNGEVVGVACDSTNTLMISAGY-HG--DIKVWDFKGRDLKSRWEVGCSLVKI 521 (809)
Q Consensus 447 --~i~i~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~l~s~~~-dg--~i~iwd~~~~~~~~~~~~~~~i~~~ 521 (809)
.|+++|+.++.... + ..+........|+|+|+.++..+. +| .|+++|+.+++..............
T Consensus 269 ~~~Iy~~d~~~~~~~~-L--------t~~~~~~~~~~~spDG~~i~f~s~~~g~~~Iy~~d~~g~~~~~lt~~~~~~~~~ 339 (435)
T PRK05137 269 NTDIYTMDLRSGTTTR-L--------TDSPAIDTSPSYSPDGSQIVFESDRSGSPQLYVMNADGSNPRRISFGGGRYSTP 339 (435)
T ss_pred CceEEEEECCCCceEE-c--------cCCCCccCceeEcCCCCEEEEEECCCCCCeEEEEECCCCCeEEeecCCCcccCe
Confidence 47788988876543 2 245555677899999998887763 33 6888898877665444444556778
Q ss_pred EEeeCCCEEEEEeCC---CeEEEEEcCCCeEEEEEecCCCCeeeEEECCCCCEEEEEeCC------CeEEEEEcCCccEE
Q 003579 522 VYHRVNGLLATVADD---LVIRLFDVVALRMVRKFEGHTDRITDFCFSEDGKWLLSSGMD------GSLRIWDVILARQI 592 (809)
Q Consensus 522 ~~s~~~~~la~~~~d---~~I~v~d~~~~~~~~~~~~h~~~I~~l~fspdg~~l~s~s~D------~~I~vwd~~~~~~i 592 (809)
.|+|+|+.|+....+ ..|.+||+.++.. +.+. +...+....|+|||++|+..+.+ ..+.++|+..+..
T Consensus 340 ~~SpdG~~ia~~~~~~~~~~i~~~d~~~~~~-~~lt-~~~~~~~p~~spDG~~i~~~~~~~~~~~~~~L~~~dl~g~~~- 416 (435)
T PRK05137 340 VWSPRGDLIAFTKQGGGQFSIGVMKPDGSGE-RILT-SGFLVEGPTWAPNGRVIMFFRQTPGSGGAPKLYTVDLTGRNE- 416 (435)
T ss_pred EECCCCCEEEEEEcCCCceEEEEEECCCCce-Eecc-CCCCCCCCeECCCCCEEEEEEccCCCCCcceEEEEECCCCce-
Confidence 899999999887653 4688899866543 3333 23357789999999998866543 2578888876554
Q ss_pred EEeeeCcceEEEEEcCC
Q 003579 593 DAIHVDVSITALSLSPN 609 (809)
Q Consensus 593 ~~~~~~~~v~~l~~spd 609 (809)
..+.....+...+|+|-
T Consensus 417 ~~l~~~~~~~~p~Wsp~ 433 (435)
T PRK05137 417 REVPTPGDASDPAWSPL 433 (435)
T ss_pred EEccCCCCccCcccCCC
Confidence 44444444777788763
No 253
>PF08662 eIF2A: Eukaryotic translation initiation factor eIF2A; InterPro: IPR013979 This entry contains beta propellor domains found in eukaryotic translation initiation factors and TolB domain-containing proteins.
Probab=99.50 E-value=2.6e-12 Score=121.97 Aligned_cols=159 Identities=18% Similarity=0.265 Sum_probs=116.5
Q ss_pred CeEEEEEcCCCCEEEEEeC----------CCcEEEEECCCC-ceeeeeeCcccccccCccccEEEEEEcCCCCEEEEE--
Q 003579 426 AVKACTISACGNFAVLGTA----------GGWIERFNLQSG-ISRGSYLDMSERSNYAHNGEVVGVACDSTNTLMISA-- 492 (809)
Q Consensus 426 ~v~~v~~s~~g~~l~~g~~----------~g~i~i~~~~~~-~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~l~s~-- 492 (809)
.-..+.|+++|++|++-.. -|...+|.+... .....+. ....++|.+++|+|+|+.+++.
T Consensus 7 ~~~~~~W~~~G~~l~~~~~~~~~~~~ks~~~~~~l~~~~~~~~~~~~i~-------l~~~~~I~~~~WsP~g~~favi~g 79 (194)
T PF08662_consen 7 DDAKLHWQPSGDYLLVKVQTRVDKSGKSYYGEFELFYLNEKNIPVESIE-------LKKEGPIHDVAWSPNGNEFAVIYG 79 (194)
T ss_pred ceEEEEecccCCEEEEEEEEeeccCcceEEeeEEEEEEecCCCccceee-------ccCCCceEEEEECcCCCEEEEEEc
Confidence 3356788999988877554 133445544221 2222221 1345679999999999887654
Q ss_pred eCcCeEEEEECCCCceeeeeecCCCeEEEEEeeCCCEEEEEeC---CCeEEEEEcCCCeEEEEEecCCCCeeeEEECCCC
Q 003579 493 GYHGDIKVWDFKGRDLKSRWEVGCSLVKIVYHRVNGLLATVAD---DLVIRLFDVVALRMVRKFEGHTDRITDFCFSEDG 569 (809)
Q Consensus 493 ~~dg~i~iwd~~~~~~~~~~~~~~~i~~~~~s~~~~~la~~~~---d~~I~v~d~~~~~~~~~~~~h~~~I~~l~fspdg 569 (809)
..++.|.+||++ ++.+..+. ...+..+.|+|+|+++++++. .|.|.+||+++.+.+.++. |. .++.++|||||
T Consensus 80 ~~~~~v~lyd~~-~~~i~~~~-~~~~n~i~wsP~G~~l~~~g~~n~~G~l~~wd~~~~~~i~~~~-~~-~~t~~~WsPdG 155 (194)
T PF08662_consen 80 SMPAKVTLYDVK-GKKIFSFG-TQPRNTISWSPDGRFLVLAGFGNLNGDLEFWDVRKKKKISTFE-HS-DATDVEWSPDG 155 (194)
T ss_pred cCCcccEEEcCc-ccEeEeec-CCCceEEEECCCCCEEEEEEccCCCcEEEEEECCCCEEeeccc-cC-cEEEEEEcCCC
Confidence 367899999997 56666554 467789999999999999874 4679999999999888775 33 47899999999
Q ss_pred CEEEEEeC------CCeEEEEEcCCccEEEEee
Q 003579 570 KWLLSSGM------DGSLRIWDVILARQIDAIH 596 (809)
Q Consensus 570 ~~l~s~s~------D~~I~vwd~~~~~~i~~~~ 596 (809)
++|++++. |..++||+.. |+++....
T Consensus 156 r~~~ta~t~~r~~~dng~~Iw~~~-G~~l~~~~ 187 (194)
T PF08662_consen 156 RYLATATTSPRLRVDNGFKIWSFQ-GRLLYKKP 187 (194)
T ss_pred CEEEEEEeccceeccccEEEEEec-CeEeEecc
Confidence 99998863 7889999985 77766543
No 254
>TIGR02658 TTQ_MADH_Hv methylamine dehydrogenase heavy chain. This family consists of the heavy chain of methylamine dehydrogenase light chain, a periplasmic enzyme. The enzyme contains a tryptophan tryptophylquinone (TTQ) prothetic group derived from two Trp residues in the light subunity. The enzyme forms a complex with the type I blue copper protein amicyanin and a cytochrome. Electron transfer procedes from TQQ to the copper and then to the heme group of the cytochrome.
Probab=99.48 E-value=4.4e-10 Score=114.63 Aligned_cols=278 Identities=9% Similarity=-0.007 Sum_probs=179.5
Q ss_pred CeEEEEeCCCCceEEEEcCCCCCEEEEEEcCCCCEEEEEeC----------CCeEEEEEeeCCeEEEEEeccCC------
Q 003579 161 GSLQLWNISTKKKLYEFKGWGSSISSCVSSPALDVVAVGCS----------DGKIHVHNVRYDEELVTFTHSMR------ 224 (809)
Q Consensus 161 g~i~lwd~~~~~~~~~~~~~~~~I~~l~~sp~~~~la~g~~----------dg~i~iwd~~~~~~~~~~~~~~~------ 224 (809)
++|.+.|..+++.+..+..-..+- .+ +|||++.|+++.. +..|.+||..+.+.+.++..+..
T Consensus 27 ~~v~ViD~~~~~v~g~i~~G~~P~-~~-~spDg~~lyva~~~~~R~~~G~~~d~V~v~D~~t~~~~~~i~~p~~p~~~~~ 104 (352)
T TIGR02658 27 TQVYTIDGEAGRVLGMTDGGFLPN-PV-VASDGSFFAHASTVYSRIARGKRTDYVEVIDPQTHLPIADIELPEGPRFLVG 104 (352)
T ss_pred ceEEEEECCCCEEEEEEEccCCCc-ee-ECCCCCEEEEEeccccccccCCCCCEEEEEECccCcEEeEEccCCCchhhcc
Confidence 899999999999999887533333 24 9999999988866 68999999999999999886422
Q ss_pred CcEEEEEEecCCCCEEEEEc-C-CCcEEEEECCCceeeeeeecccccceEEEEEecCCCEEEEEcCCCcEEEEEeeCCCC
Q 003579 225 GAVTALAFSSDGQPLLASGA-S-SGVISIWNLEKRRLQSVIREAHDNAIISLHFFANEPVLMSASADNSIKMWIFDTTDG 302 (809)
Q Consensus 225 ~~V~~l~fs~dg~~~lasg~-~-dg~I~iwdl~~~~~~~~~~~~h~~~V~~l~~~~~~~~l~s~s~d~~i~vw~~~~~~~ 302 (809)
.....++++|||+ +|++.. . +..|.+.|+.+++.+..+.. .+...-...+++. .+ +-+.||......++....
T Consensus 105 ~~~~~~~ls~dgk-~l~V~n~~p~~~V~VvD~~~~kvv~ei~v--p~~~~vy~t~e~~-~~-~~~~Dg~~~~v~~d~~g~ 179 (352)
T TIGR02658 105 TYPWMTSLTPDNK-TLLFYQFSPSPAVGVVDLEGKAFVRMMDV--PDCYHIFPTANDT-FF-MHCRDGSLAKVGYGTKGN 179 (352)
T ss_pred CccceEEECCCCC-EEEEecCCCCCEEEEEECCCCcEEEEEeC--CCCcEEEEecCCc-cE-EEeecCceEEEEecCCCc
Confidence 1234889999999 555444 4 78999999999999998873 1111212222222 22 223455555444433221
Q ss_pred CceeEE--eccCCCCCC-eeEEEec-CCCEEEEEECCCCEEEEEeeecccceecchhhHHHHHhhccchhhhhccCceeE
Q 003579 303 DPRLLR--FRSGHSAPP-LCIRFYA-NGRHILSAGQDRAFRLFSVIQDQQSRELSQRHVAKRARKLKMKEEELKLKPVIA 378 (809)
Q Consensus 303 ~~~~~~--~~~~h~~~v-~~i~~~~-~~~~l~s~~~dg~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~ 378 (809)
..... .+.+...++ ..-.|.+ +|+++..... |.|.+.|+.........
T Consensus 180 -~~~~~~~vf~~~~~~v~~rP~~~~~dg~~~~vs~e-G~V~~id~~~~~~~~~~-------------------------- 231 (352)
T TIGR02658 180 -PKIKPTEVFHPEDEYLINHPAYSNKSGRLVWPTYT-GKIFQIDLSSGDAKFLP-------------------------- 231 (352)
T ss_pred -eEEeeeeeecCCccccccCCceEcCCCcEEEEecC-CeEEEEecCCCcceecc--------------------------
Confidence 11110 111100000 0004566 7877777666 99999996543321110
Q ss_pred EeeccccccccceeEEeecCCceEEEEEeeeeeecceeeecCCCCCCCeEEEEEcCCCCEEEEEe----------CCCcE
Q 003579 379 FDCAEIRERDWCNVVTCHMDTAQAYVWRLQNFVLGEHILRPCPENPTAVKACTISACGNFAVLGT----------AGGWI 448 (809)
Q Consensus 379 ~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~v~~v~~s~~g~~l~~g~----------~~g~i 448 (809)
.|..-...... ..-.+....-++++++|+.+++.. ..+.|
T Consensus 232 -------------------------~~~~~~~~~~~-----~~wrP~g~q~ia~~~dg~~lyV~~~~~~~~thk~~~~~V 281 (352)
T TIGR02658 232 -------------------------AIEAFTEAEKA-----DGWRPGGWQQVAYHRARDRIYLLADQRAKWTHKTASRFL 281 (352)
T ss_pred -------------------------eeeeccccccc-----cccCCCcceeEEEcCCCCEEEEEecCCccccccCCCCEE
Confidence 01110000000 001124455599999999999853 22479
Q ss_pred EEEECCCCceeeeeeCcccccccCccccEEEEEEcCCCC-EEEEEe-CcCeEEEEECCCCceeeee
Q 003579 449 ERFNLQSGISRGSYLDMSERSNYAHNGEVVGVACDSTNT-LMISAG-YHGDIKVWDFKGRDLKSRW 512 (809)
Q Consensus 449 ~i~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~-~l~s~~-~dg~i~iwd~~~~~~~~~~ 512 (809)
.++|..+++....+. -...+.+++++||++ +|++.. .++.|.+.|..+++.+..+
T Consensus 282 ~ViD~~t~kvi~~i~---------vG~~~~~iavS~Dgkp~lyvtn~~s~~VsViD~~t~k~i~~i 338 (352)
T TIGR02658 282 FVVDAKTGKRLRKIE---------LGHEIDSINVSQDAKPLLYALSTGDKTLYIFDAETGKELSSV 338 (352)
T ss_pred EEEECCCCeEEEEEe---------CCCceeeEEECCCCCeEEEEeCCCCCcEEEEECcCCeEEeee
Confidence 999999999998875 245789999999999 777666 6788999999999999887
No 255
>KOG1409 consensus Uncharacterized conserved protein, contains WD40 repeats and FYVE domains [Function unknown]
Probab=99.47 E-value=5.2e-12 Score=120.84 Aligned_cols=248 Identities=18% Similarity=0.290 Sum_probs=182.1
Q ss_pred EEEEccccccEEEEEE--eCCEEEEEeCCCcEEEEEcCCCccccceeeeEEcCCccccEEEEeCCCCCCEEEEEeCCCeE
Q 003579 86 VATWSRHSAKVNLLLL--FGEHILSIDIDGNMFIWAFKGIEENLAPVGHVKLDDKFTPTCIMHPDTYLNKVIVGSQEGSL 163 (809)
Q Consensus 86 ~~~~~~h~~~V~~l~~--~g~~l~s~~~dg~i~vWd~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~l~~~~~dg~i 163 (809)
+..++||.+.|+.... -...+++++.|.+++||--.........+... -........+++.. .+|++|-..|++
T Consensus 17 l~~~eG~~d~vn~~~l~~~e~gv~~~s~drtvrv~lkrds~q~wpsI~~~--mP~~~~~~~y~~e~--~~L~vg~~ngtv 92 (404)
T KOG1409|consen 17 LSKIEGSQDDVNAAILIPKEEGVISVSEDRTVRVWLKRDSGQYWPSIYHY--MPSPCSAMEYVSES--RRLYVGQDNGTV 92 (404)
T ss_pred hhhhcCchhhhhhheeccCCCCeEEccccceeeeEEeccccccCchhhhh--CCCCceEeeeeccc--eEEEEEEecceE
Confidence 3447899888887653 56789999999999999654433322222111 12233445577777 789999999999
Q ss_pred EEEeCC----CCceEEEEcCCCCCEEEEEEcCCCCEEEEEeCCCeEEEEEeeCCeEEEEEeccCCCcEEEEEEecCCCCE
Q 003579 164 QLWNIS----TKKKLYEFKGWGSSISSCVSSPALDVVAVGCSDGKIHVHNVRYDEELVTFTHSMRGAVTALAFSSDGQPL 239 (809)
Q Consensus 164 ~lwd~~----~~~~~~~~~~~~~~I~~l~~sp~~~~la~g~~dg~i~iwd~~~~~~~~~~~~~~~~~V~~l~fs~dg~~~ 239 (809)
.-+.+. ....++....|...|..+-|+....++++.+.|..+.-.-.+.+..+..+... ...+++.|.-. +
T Consensus 93 tefs~sedfnkm~~~r~~~~h~~~v~~~if~~~~e~V~s~~~dk~~~~hc~e~~~~lg~Y~~~--~~~t~~~~d~~---~ 167 (404)
T KOG1409|consen 93 TEFALSEDFNKMTFLKDYLAHQARVSAIVFSLTHEWVLSTGKDKQFAWHCTESGNRLGGYNFE--TPASALQFDAL---Y 167 (404)
T ss_pred EEEEhhhhhhhcchhhhhhhhhcceeeEEecCCceeEEEeccccceEEEeeccCCcccceEee--ccCCCCceeeE---E
Confidence 888653 34456667789999999999999999999999988877667777665544432 12222322222 4
Q ss_pred EEEEcCCCcEEEEECCC--ceeeeeeecccccceEEEEEecCCCEEEEEcCCCcEEEEEeeCCCCCceeEEeccCCCCCC
Q 003579 240 LASGASSGVISIWNLEK--RRLQSVIREAHDNAIISLHFFANEPVLMSASADNSIKMWIFDTTDGDPRLLRFRSGHSAPP 317 (809)
Q Consensus 240 lasg~~dg~I~iwdl~~--~~~~~~~~~~h~~~V~~l~~~~~~~~l~s~s~d~~i~vw~~~~~~~~~~~~~~~~~h~~~v 317 (809)
...|...|.|.+-.+.. -.++.++. +|.+.+.+++|.+...+|+++..|..+.+||+-...+ ......+|...|
T Consensus 168 ~fvGd~~gqvt~lr~~~~~~~~i~~~~-~h~~~~~~l~Wd~~~~~LfSg~~d~~vi~wdigg~~g---~~~el~gh~~kV 243 (404)
T KOG1409|consen 168 AFVGDHSGQITMLKLEQNGCQLITTFN-GHTGEVTCLKWDPGQRLLFSGASDHSVIMWDIGGRKG---TAYELQGHNDKV 243 (404)
T ss_pred EEecccccceEEEEEeecCCceEEEEc-CcccceEEEEEcCCCcEEEeccccCceEEEeccCCcc---eeeeeccchhhh
Confidence 45566667666655443 35666666 9999999999999999999999999999999876653 344567999999
Q ss_pred eeEEEecCCCEEEEEECCCCEEEEEeeec
Q 003579 318 LCIRFYANGRHILSAGQDRAFRLFSVIQD 346 (809)
Q Consensus 318 ~~i~~~~~~~~l~s~~~dg~i~~wd~~~~ 346 (809)
..+.+.+--+.+++++.||.|.+|+....
T Consensus 244 ~~l~~~~~t~~l~S~~edg~i~~w~mn~~ 272 (404)
T KOG1409|consen 244 QALSYAQHTRQLISCGEDGGIVVWNMNVK 272 (404)
T ss_pred hhhhhhhhheeeeeccCCCeEEEEeccce
Confidence 99999998899999999999999998644
No 256
>TIGR02658 TTQ_MADH_Hv methylamine dehydrogenase heavy chain. This family consists of the heavy chain of methylamine dehydrogenase light chain, a periplasmic enzyme. The enzyme contains a tryptophan tryptophylquinone (TTQ) prothetic group derived from two Trp residues in the light subunity. The enzyme forms a complex with the type I blue copper protein amicyanin and a cytochrome. Electron transfer procedes from TQQ to the copper and then to the heme group of the cytochrome.
Probab=99.46 E-value=1.3e-09 Score=111.27 Aligned_cols=281 Identities=13% Similarity=0.111 Sum_probs=181.4
Q ss_pred CCCEEEEEeCC-----CeEEEEEeeCCeEEEEEeccCCCcEEEEEEecCCCCEEEEEc---------CCCcEEEEECCCc
Q 003579 192 ALDVVAVGCSD-----GKIHVHNVRYDEELVTFTHSMRGAVTALAFSSDGQPLLASGA---------SSGVISIWNLEKR 257 (809)
Q Consensus 192 ~~~~la~g~~d-----g~i~iwd~~~~~~~~~~~~~~~~~V~~l~fs~dg~~~lasg~---------~dg~I~iwdl~~~ 257 (809)
++.++.+.... ++|.+.|..+++.+.++..+. .+ ..+ ++|||+.+.++.+ .+..|.+||..+.
T Consensus 11 ~~~~v~V~d~~~~~~~~~v~ViD~~~~~v~g~i~~G~-~P-~~~-~spDg~~lyva~~~~~R~~~G~~~d~V~v~D~~t~ 87 (352)
T TIGR02658 11 DARRVYVLDPGHFAATTQVYTIDGEAGRVLGMTDGGF-LP-NPV-VASDGSFFAHASTVYSRIARGKRTDYVEVIDPQTH 87 (352)
T ss_pred CCCEEEEECCcccccCceEEEEECCCCEEEEEEEccC-CC-cee-ECCCCCEEEEEeccccccccCCCCCEEEEEECccC
Confidence 44455554433 899999999999999998763 22 235 9999995555556 6889999999999
Q ss_pred eeeeeeeccc------ccceEEEEEecCCCEEEEEc-C-CCcEEEEEeeCCCCCceeEEeccCCCCCCeeEEEecCCCEE
Q 003579 258 RLQSVIREAH------DNAIISLHFFANEPVLMSAS-A-DNSIKMWIFDTTDGDPRLLRFRSGHSAPPLCIRFYANGRHI 329 (809)
Q Consensus 258 ~~~~~~~~~h------~~~V~~l~~~~~~~~l~s~s-~-d~~i~vw~~~~~~~~~~~~~~~~~h~~~v~~i~~~~~~~~l 329 (809)
+.+..+..+- ......++++|||++|+... . ++.|.+.|+... +.+....- |++..+
T Consensus 88 ~~~~~i~~p~~p~~~~~~~~~~~~ls~dgk~l~V~n~~p~~~V~VvD~~~~----kvv~ei~v-----------p~~~~v 152 (352)
T TIGR02658 88 LPIADIELPEGPRFLVGTYPWMTSLTPDNKTLLFYQFSPSPAVGVVDLEGK----AFVRMMDV-----------PDCYHI 152 (352)
T ss_pred cEEeEEccCCCchhhccCccceEEECCCCCEEEEecCCCCCEEEEEECCCC----cEEEEEeC-----------CCCcEE
Confidence 9998887321 12334789999999888765 3 789999988766 34443322 333333
Q ss_pred EEE--------ECCCCEEEEEeeecccceecchhhHHHHHhhccchhhhhccCceeEEeeccccccccceeEEeecCCce
Q 003579 330 LSA--------GQDRAFRLFSVIQDQQSRELSQRHVAKRARKLKMKEEELKLKPVIAFDCAEIRERDWCNVVTCHMDTAQ 401 (809)
Q Consensus 330 ~s~--------~~dg~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~ 401 (809)
+.. +.||......+........- .
T Consensus 153 y~t~e~~~~~~~~Dg~~~~v~~d~~g~~~~~------------------------------------------------~ 184 (352)
T TIGR02658 153 FPTANDTFFMHCRDGSLAKVGYGTKGNPKIK------------------------------------------------P 184 (352)
T ss_pred EEecCCccEEEeecCceEEEEecCCCceEEe------------------------------------------------e
Confidence 332 23444433332221110000 0
Q ss_pred EEEEEeeeeeecceeeecCCCCCCCeEEEEEcC-CCCEEEEEeCCCcEEEEECCCCcee-----eeeeCcccccccCccc
Q 003579 402 AYVWRLQNFVLGEHILRPCPENPTAVKACTISA-CGNFAVLGTAGGWIERFNLQSGISR-----GSYLDMSERSNYAHNG 475 (809)
Q Consensus 402 ~~~w~~~~~~~~~~~~~~~~~~~~~v~~v~~s~-~g~~l~~g~~~g~i~i~~~~~~~~~-----~~~~~~~~~~~~~h~~ 475 (809)
..+++..+ ...+ . .+ .+++ +|+++.+... |.|.+.|+...... ..+.. ......-..+
T Consensus 185 ~~vf~~~~----~~v~----~--rP----~~~~~dg~~~~vs~e-G~V~~id~~~~~~~~~~~~~~~~~-~~~~~~wrP~ 248 (352)
T TIGR02658 185 TEVFHPED----EYLI----N--HP----AYSNKSGRLVWPTYT-GKIFQIDLSSGDAKFLPAIEAFTE-AEKADGWRPG 248 (352)
T ss_pred eeeecCCc----cccc----c--CC----ceEcCCCcEEEEecC-CeEEEEecCCCcceecceeeeccc-cccccccCCC
Confidence 00000000 0000 0 11 3455 8888888877 99999996543322 11110 0000011334
Q ss_pred cEEEEEEcCCCCEEEEEe----------CcCeEEEEECCCCceeeeeecCCCeEEEEEeeCCC-EEEEEe-CCCeEEEEE
Q 003579 476 EVVGVACDSTNTLMISAG----------YHGDIKVWDFKGRDLKSRWEVGCSLVKIVYHRVNG-LLATVA-DDLVIRLFD 543 (809)
Q Consensus 476 ~v~~l~~~~~~~~l~s~~----------~dg~i~iwd~~~~~~~~~~~~~~~i~~~~~s~~~~-~la~~~-~d~~I~v~d 543 (809)
.+..++++++++.+.... ..+.|.++|..+++.+..+.....+..++++||++ +|++.+ .++.|.++|
T Consensus 249 g~q~ia~~~dg~~lyV~~~~~~~~thk~~~~~V~ViD~~t~kvi~~i~vG~~~~~iavS~Dgkp~lyvtn~~s~~VsViD 328 (352)
T TIGR02658 249 GWQQVAYHRARDRIYLLADQRAKWTHKTASRFLFVVDAKTGKRLRKIELGHEIDSINVSQDAKPLLYALSTGDKTLYIFD 328 (352)
T ss_pred cceeEEEcCCCCEEEEEecCCccccccCCCCEEEEEECCCCeEEEEEeCCCceeeEEECCCCCeEEEEeCCCCCcEEEEE
Confidence 455599999998888743 22579999999999999999999999999999999 777776 578899999
Q ss_pred cCCCeEEEEEe
Q 003579 544 VVALRMVRKFE 554 (809)
Q Consensus 544 ~~~~~~~~~~~ 554 (809)
..+++.++++.
T Consensus 329 ~~t~k~i~~i~ 339 (352)
T TIGR02658 329 AETGKELSSVN 339 (352)
T ss_pred CcCCeEEeeec
Confidence 99999998873
No 257
>KOG2314 consensus Translation initiation factor 3, subunit b (eIF-3b) [Translation, ribosomal structure and biogenesis]
Probab=99.45 E-value=4.7e-11 Score=121.23 Aligned_cols=328 Identities=10% Similarity=0.102 Sum_probs=205.0
Q ss_pred EEEEeCCCCceEEEEcCCCCCEEEEEEcCCCCEEEEEeCCCeEEEEEeeCCeEEEEEeccCCCcEEEEEEecCCCCEEEE
Q 003579 163 LQLWNISTKKKLYEFKGWGSSISSCVSSPALDVVAVGCSDGKIHVHNVRYDEELVTFTHSMRGAVTALAFSSDGQPLLAS 242 (809)
Q Consensus 163 i~lwd~~~~~~~~~~~~~~~~I~~l~~sp~~~~la~g~~dg~i~iwd~~~~~~~~~~~~~~~~~V~~l~fs~dg~~~las 242 (809)
...||.........-...+-.=+-+.|||.|.||++-...| |.+|--++-..++.|.+. .|.-+.|||..+ +|++
T Consensus 192 svfwN~~~n~p~~ie~RenWTetyv~wSP~GTYL~t~Hk~G-I~lWGG~~f~r~~RF~Hp---~Vq~idfSP~Ek-YLVT 266 (698)
T KOG2314|consen 192 SVFWNSKFNEPSLIEERENWTETYVRWSPKGTYLVTFHKQG-IALWGGESFDRIQRFYHP---GVQFIDFSPNEK-YLVT 266 (698)
T ss_pred EEEccccCCchhhhhhhhcceeeeEEecCCceEEEEEeccc-eeeecCccHHHHHhccCC---CceeeecCCccc-eEEE
Confidence 45677554332222122223346789999999999988766 889987777777777653 589999999998 7887
Q ss_pred EcC-----------CCcEEEEECCCceeeeeeec--ccccceEEEEEecCCCEEEEEcCCCcEEEEEeeCCCCCceeEEe
Q 003579 243 GAS-----------SGVISIWNLEKRRLQSVIRE--AHDNAIISLHFFANEPVLMSASADNSIKMWIFDTTDGDPRLLRF 309 (809)
Q Consensus 243 g~~-----------dg~I~iwdl~~~~~~~~~~~--~h~~~V~~l~~~~~~~~l~s~s~d~~i~vw~~~~~~~~~~~~~~ 309 (809)
-+. ...++|||+.+|.+...+.. .....-.-..||.|+++++.-.. ++|.|++... ..++..
T Consensus 267 ~s~~p~~~~~~d~e~~~l~IWDI~tG~lkrsF~~~~~~~~~WP~frWS~DdKy~Arm~~-~sisIyEtps----f~lld~ 341 (698)
T KOG2314|consen 267 YSPEPIIVEEDDNEGQQLIIWDIATGLLKRSFPVIKSPYLKWPIFRWSHDDKYFARMTG-NSISIYETPS----FMLLDK 341 (698)
T ss_pred ecCCccccCcccCCCceEEEEEccccchhcceeccCCCccccceEEeccCCceeEEecc-ceEEEEecCc----eeeecc
Confidence 652 25799999999988887762 11122235689999999998776 5788884332 233333
Q ss_pred ccCCCCCCeeEEEecCCCEEEEEECC-----CCEEEEEeeecccceecchhhHHHHHhhccchhhhhccCceeEEeeccc
Q 003579 310 RSGHSAPPLCIRFYANGRHILSAGQD-----RAFRLFSVIQDQQSRELSQRHVAKRARKLKMKEEELKLKPVIAFDCAEI 384 (809)
Q Consensus 310 ~~~h~~~v~~i~~~~~~~~l~s~~~d-----g~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~ 384 (809)
..-.-..|....|+|.++.|+.-... ..+.+..+.+.+.++..
T Consensus 342 Kslki~gIr~FswsP~~~llAYwtpe~~~~parvtL~evPs~~~iRt~-------------------------------- 389 (698)
T KOG2314|consen 342 KSLKISGIRDFSWSPTSNLLAYWTPETNNIPARVTLMEVPSKREIRTK-------------------------------- 389 (698)
T ss_pred cccCCccccCcccCCCcceEEEEcccccCCcceEEEEecCccceeeec--------------------------------
Confidence 33345678888999987766643211 11222222222111110
Q ss_pred cccccceeEEeecCCceEEEEEeeeeeecceeeecCCCCCCCeEEEEEcCCCCEEEEE----------eCCCcEEEEECC
Q 003579 385 RERDWCNVVTCHMDTAQAYVWRLQNFVLGEHILRPCPENPTAVKACTISACGNFAVLG----------TAGGWIERFNLQ 454 (809)
Q Consensus 385 ~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~v~~v~~s~~g~~l~~g----------~~~g~i~i~~~~ 454 (809)
.++++ .=..+-|-.+|.+|++- +.-..+.||.+.
T Consensus 390 ------------------nlfnV------------------sDckLhWQk~gdyLcvkvdR~tK~~~~g~f~n~eIfrir 433 (698)
T KOG2314|consen 390 ------------------NLFNV------------------SDCKLHWQKSGDYLCVKVDRHTKSKVKGQFSNLEIFRIR 433 (698)
T ss_pred ------------------cceee------------------eccEEEeccCCcEEEEEEEeeccccccceEeeEEEEEee
Confidence 01111 11123344555555542 112245566655
Q ss_pred CCceeeeeeCcccccccCccccEEEEEEcCCCCEEEEEeC---cCeEEEEECCCC----ceeeeeecCCCeEEEEEeeCC
Q 003579 455 SGISRGSYLDMSERSNYAHNGEVVGVACDSTNTLMISAGY---HGDIKVWDFKGR----DLKSRWEVGCSLVKIVYHRVN 527 (809)
Q Consensus 455 ~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~l~s~~~---dg~i~iwd~~~~----~~~~~~~~~~~i~~~~~s~~~ 527 (809)
......... .-...|...+|.|.|..+++-+. ..++.+|.+++. +++..+.. ...+.+.|+|.|
T Consensus 434 eKdIpve~v--------elke~vi~FaWEP~gdkF~vi~g~~~k~tvsfY~~e~~~~~~~lVk~~dk-~~~N~vfwsPkG 504 (698)
T KOG2314|consen 434 EKDIPVEVV--------ELKESVIAFAWEPHGDKFAVISGNTVKNTVSFYAVETNIKKPSLVKELDK-KFANTVFWSPKG 504 (698)
T ss_pred ccCCCceee--------ecchheeeeeeccCCCeEEEEEccccccceeEEEeecCCCchhhhhhhcc-cccceEEEcCCC
Confidence 443332222 45678899999999987776553 356889988732 23333333 567889999999
Q ss_pred CEEEEE---eCCCeEEEEEcCCCeEEEEEecCCCCeeeEEECCCCCEEEEEeC
Q 003579 528 GLLATV---ADDLVIRLFDVVALRMVRKFEGHTDRITDFCFSEDGKWLLSSGM 577 (809)
Q Consensus 528 ~~la~~---~~d~~I~v~d~~~~~~~~~~~~h~~~I~~l~fspdg~~l~s~s~ 577 (809)
++++++ +..|.+..+|+.-..+...-.......+.+.|.|.|||++|++.
T Consensus 505 ~fvvva~l~s~~g~l~F~D~~~a~~k~~~~~eh~~at~veWDPtGRYvvT~ss 557 (698)
T KOG2314|consen 505 RFVVVAALVSRRGDLEFYDTDYADLKDTASPEHFAATEVEWDPTGRYVVTSSS 557 (698)
T ss_pred cEEEEEEecccccceEEEecchhhhhhccCccccccccceECCCCCEEEEeee
Confidence 988876 45789999998753332222222234678999999999999874
No 258
>KOG2041 consensus WD40 repeat protein [General function prediction only]
Probab=99.45 E-value=1.9e-10 Score=120.00 Aligned_cols=404 Identities=12% Similarity=0.133 Sum_probs=260.0
Q ss_pred EEeCCCCCCEEEEEeCCCeEEEEeCCCCc---------------eEEEEcCCCCCEEEEEEcCCCCEEEEEeCCCeEEEE
Q 003579 144 IMHPDTYLNKVIVGSQEGSLQLWNISTKK---------------KLYEFKGWGSSISSCVSSPALDVVAVGCSDGKIHVH 208 (809)
Q Consensus 144 ~~~p~~~~~~l~~~~~dg~i~lwd~~~~~---------------~~~~~~~~~~~I~~l~~sp~~~~la~g~~dg~i~iw 208 (809)
.|+... ++|++|+.||.+++..+.+.. .-+++.||...|..+.|..+.+.|-+...+|.|.+|
T Consensus 21 ~WNke~--gyIAcgG~dGlLKVlKl~t~t~d~~~~glaa~snLsmNQtLeGH~~sV~vvTWNe~~QKLTtSDt~GlIiVW 98 (1189)
T KOG2041|consen 21 EWNKES--GYIACGGADGLLKVLKLGTDTTDLNKSGLAAASNLSMNQTLEGHNASVMVVTWNENNQKLTTSDTSGLIIVW 98 (1189)
T ss_pred EEcccC--CeEEeccccceeEEEEccccCCcccccccccccccchhhhhccCcceEEEEEeccccccccccCCCceEEEE
Confidence 366666 889999999999999876432 235678999999999999999999999999999999
Q ss_pred EeeCCeEEEEEe-ccCCCcEEEEEEecCCCCEEEEEcCCCcEEEEECCCceeeeeeecccccceEEEEEecCCCEEEEEc
Q 003579 209 NVRYDEELVTFT-HSMRGAVTALAFSSDGQPLLASGASSGVISIWNLEKRRLQSVIREAHDNAIISLHFFANEPVLMSAS 287 (809)
Q Consensus 209 d~~~~~~~~~~~-~~~~~~V~~l~fs~dg~~~lasg~~dg~I~iwdl~~~~~~~~~~~~h~~~V~~l~~~~~~~~l~s~s 287 (809)
-+-.|.-...+. ...++.|.+++|..||. .++....||.|.+=.++..+.-..-. ...-...+.|++|...++.+-
T Consensus 99 mlykgsW~EEMiNnRnKSvV~SmsWn~dG~-kIcIvYeDGavIVGsvdGNRIwgKeL--kg~~l~hv~ws~D~~~~Lf~~ 175 (1189)
T KOG2041|consen 99 MLYKGSWCEEMINNRNKSVVVSMSWNLDGT-KICIVYEDGAVIVGSVDGNRIWGKEL--KGQLLAHVLWSEDLEQALFKK 175 (1189)
T ss_pred eeecccHHHHHhhCcCccEEEEEEEcCCCc-EEEEEEccCCEEEEeeccceecchhc--chheccceeecccHHHHHhhh
Confidence 998776433322 22356899999999999 77888889998887776654432211 112244788999999888888
Q ss_pred CCCcEEEEEeeCCCCC---cee-EE---eccCCCCCCeeEEEe--------cCCCEEEEEECCCCEEEEEeeecccceec
Q 003579 288 ADNSIKMWIFDTTDGD---PRL-LR---FRSGHSAPPLCIRFY--------ANGRHILSAGQDRAFRLFSVIQDQQSREL 352 (809)
Q Consensus 288 ~d~~i~vw~~~~~~~~---~~~-~~---~~~~h~~~v~~i~~~--------~~~~~l~s~~~dg~i~~wd~~~~~~~~~~ 352 (809)
.+|.+.++|....-.. ..+ +. .+......+..+.|. ||-..|+.+..+|.+.+..-.++.....+
T Consensus 176 ange~hlydnqgnF~~Kl~~~c~Vn~tg~~s~~~~kia~i~w~~g~~~~v~pdrP~lavcy~nGr~QiMR~eND~~Pvv~ 255 (1189)
T KOG2041|consen 176 ANGETHLYDNQGNFERKLEKDCEVNGTGIFSNFPTKIAEIEWNTGPYQPVPPDRPRLAVCYANGRMQIMRSENDPEPVVV 255 (1189)
T ss_pred cCCcEEEecccccHHHhhhhceEEeeeeeecCCCccccceeeccCccccCCCCCCEEEEEEcCceehhhhhcCCCCCeEE
Confidence 8899999975432100 001 10 111112224455553 36678888888888777654333221111
Q ss_pred chhhHHHHHhhccchhhhhccCceeEEeeccccccccceeEEeecCCceEEEEEeeeeeecceeeecCCCCCCCeEEEEE
Q 003579 353 SQRHVAKRARKLKMKEEELKLKPVIAFDCAEIRERDWCNVVTCHMDTAQAYVWRLQNFVLGEHILRPCPENPTAVKACTI 432 (809)
Q Consensus 353 ~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~v~~v~~ 432 (809)
. ..-.+....|
T Consensus 256 d---------------------------------------------------------------------tgm~~vgakW 266 (1189)
T KOG2041|consen 256 D---------------------------------------------------------------------TGMKIVGAKW 266 (1189)
T ss_pred e---------------------------------------------------------------------cccEeeccee
Confidence 1 1145677889
Q ss_pred cCCCCEEEEEeCCC---------cEEEEECCCCceeeeeeCcccccccCccccEEEEEEcCCCCEEEEEeC---------
Q 003579 433 SACGNFAVLGTAGG---------WIERFNLQSGISRGSYLDMSERSNYAHNGEVVGVACDSTNTLMISAGY--------- 494 (809)
Q Consensus 433 s~~g~~l~~g~~~g---------~i~i~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~l~s~~~--------- 494 (809)
+++|.++++++.+. .|.+|. .-|.....+. -....|++++|-..|-.++.+-.
T Consensus 267 nh~G~vLAvcG~~~da~~~~d~n~v~Fys-p~G~i~gtlk--------vpg~~It~lsWEg~gLriA~AvdsfiyfanIR 337 (1189)
T KOG2041|consen 267 NHNGAVLAVCGNDSDADEPTDSNKVHFYS-PYGHIVGTLK--------VPGSCITGLSWEGTGLRIAIAVDSFIYFANIR 337 (1189)
T ss_pred cCCCcEEEEccCcccccCccccceEEEec-cchhheEEEe--------cCCceeeeeEEcCCceEEEEEecceEEEEeec
Confidence 99999999886542 344443 3355555554 45567888887766644443211
Q ss_pred ----------------------cCeEEEEECCCCcee-eeee------------------------------cCCCeEEE
Q 003579 495 ----------------------HGDIKVWDFKGRDLK-SRWE------------------------------VGCSLVKI 521 (809)
Q Consensus 495 ----------------------dg~i~iwd~~~~~~~-~~~~------------------------------~~~~i~~~ 521 (809)
.-.|.+||..+.+.. +... ..+.+..+
T Consensus 338 P~ykWgy~e~TvVy~y~~~e~p~y~i~Fwdtk~nek~vK~V~~~~~~a~~~ehCvL~~~~d~~~i~e~s~le~~~~~~~l 417 (1189)
T KOG2041|consen 338 PEYKWGYIEETVVYVYQKEELPQYGIMFWDTKTNEKTVKTVTHFENMAFYREHCVLINRQDDGVIPEYSTLENRSRVYFL 417 (1189)
T ss_pred ccceEEEeeeEEEEEEccCCCcceEEEEEecccChhhhhhhcceeehheecccEEEEeccccCCCcchhhhhcccceEEE
Confidence 113667777654211 0000 00111111
Q ss_pred E--------------------EeeCCCEEEEEeCCCeEEEEEcCCCeE--------------------------------
Q 003579 522 V--------------------YHRVNGLLATVADDLVIRLFDVVALRM-------------------------------- 549 (809)
Q Consensus 522 ~--------------------~s~~~~~la~~~~d~~I~v~d~~~~~~-------------------------------- 549 (809)
. ..-++..++.++.+ .+.+|.....+.
T Consensus 418 ~LCNSIGT~lD~kytdirP~Fv~vn~~~vviAS~e-~~~iWhy~~pK~~s~l~~~k~rkegr~h~Ddtp~ga~d~~l~ys 496 (1189)
T KOG2041|consen 418 QLCNSIGTSLDYKYTDIRPKFVCVNGICVVIASEE-RYFIWHYVLPKFNSVLAGVKIRKEGRFHGDDTPEGAQDRTLEYS 496 (1189)
T ss_pred eeecccCCcCCCCcceeeeeEEEecceEEEEeccc-cEEEEEEeccchhhhhhhhhhcccccccCCCCccchhhceeecc
Confidence 1 11124455555544 567776432211
Q ss_pred EEEEecCCCCeeeEEECCCCCEEEEEeCCCeEEEEEcCCccEEEEeeeCcceEEEEEcCCCCeEEEEEeCCCeEEEeecC
Q 003579 550 VRKFEGHTDRITDFCFSEDGKWLLSSGMDGSLRIWDVILARQIDAIHVDVSITALSLSPNMDVLATAHVDQNGVYLWVNR 629 (809)
Q Consensus 550 ~~~~~~h~~~I~~l~fspdg~~l~s~s~D~~I~vwd~~~~~~i~~~~~~~~v~~l~~spdg~~lat~~~d~~~i~lW~~~ 629 (809)
..++.|..++|.+++.| .++|+.+-..|.|.-|.++++-+...+.....+.+++.+-+...+|....-| .+-+.++.
T Consensus 497 ~kt~~G~~DpICAl~~s--dk~l~vareSG~I~rySl~nv~l~n~y~~n~~~y~~~lNCnstRlAiId~~g-v~tf~dLd 573 (1189)
T KOG2041|consen 497 TKTLLGSKDPICALCIS--DKFLMVARESGGIYRYSLNNVVLTNSYPVNPSIYSIKLNCNSTRLAIIDLVG-VVTFQDLD 573 (1189)
T ss_pred ceeeccCCCcceeeeec--ceEEEEEeccCceEEEEecceeeeeccccCchheeEeeccCcchhhhhhhhc-eeeeeecc
Confidence 12345667788888886 4588899999999999999999988888887899999988888888776666 36666665
Q ss_pred cccCC
Q 003579 630 CMFSG 634 (809)
Q Consensus 630 ~~~~~ 634 (809)
..|..
T Consensus 574 ~d~~g 578 (1189)
T KOG2041|consen 574 YDFDG 578 (1189)
T ss_pred cccCc
Confidence 54443
No 259
>PF04762 IKI3: IKI3 family; InterPro: IPR006849 Members of this family are components of the elongator multi-subunit component of a novel RNA polymerase II holoenzyme for transcriptional elongation [].
Probab=99.43 E-value=7.4e-08 Score=112.35 Aligned_cols=479 Identities=11% Similarity=0.090 Sum_probs=273.1
Q ss_pred eEEEE-cCCeEEEEEEcCCeEEEE----EcCccEEEEecCCCCCCcEEEEEeCCeEEEE--ECCe-EEEEEC--------
Q 003579 19 FSVQR-LGTENFVTVSVGKAFHIY----NCAKLNLVLVGPQLPKKIRALASYRDYTFAA--YGNH-IAVVKR-------- 82 (809)
Q Consensus 19 ~~~~~-~~~~~~i~~~~~~~i~iw----d~~~~~~~~~~~~~~~~I~~la~~~~~~~~a--~g~~-i~vw~~-------- 82 (809)
.++.+ .+.+.++++..+|.|.++ |......-.++ .....|.|+++|||...+| +|.. +.+..+
T Consensus 79 vs~~yl~d~~~l~~~~~~Gdi~~~~~~~~~~~~~~E~VG-~vd~GI~a~~WSPD~Ella~vT~~~~l~~mt~~fd~i~E~ 157 (928)
T PF04762_consen 79 VSFQYLADSESLCIALASGDIILVREDPDPDEDEIEIVG-SVDSGILAASWSPDEELLALVTGEGNLLLMTRDFDPISEV 157 (928)
T ss_pred EEEEeccCCCcEEEEECCceEEEEEccCCCCCceeEEEE-EEcCcEEEEEECCCcCEEEEEeCCCEEEEEeccceEEEEe
Confidence 34444 456678888888999898 77766665555 3588999999999965554 4543 333210
Q ss_pred -----------------CeeEEEEcc------------------------ccccEEEEEE--eCCEEEEEeC---C---C
Q 003579 83 -----------------AHQVATWSR------------------------HSAKVNLLLL--FGEHILSIDI---D---G 113 (809)
Q Consensus 83 -----------------~~~~~~~~~------------------------h~~~V~~l~~--~g~~l~s~~~---d---g 113 (809)
|++.-+++| +...-..|+| ||.++|+.+. . .
T Consensus 158 ~l~~~~~~~~~~VsVGWGkKeTQF~Gs~gK~aa~~~~~p~~~~~d~~~~s~dd~~~~ISWRGDG~yFAVss~~~~~~~~R 237 (928)
T PF04762_consen 158 PLDSDDFGESKHVSVGWGKKETQFHGSAGKAAARQLRDPTVPKVDEGKLSWDDGRVRISWRGDGEYFAVSSVEPETGSRR 237 (928)
T ss_pred ecCccccCCCceeeeccCcccCccCcchhhhhhhhccCCCCCccccCccccCCCceEEEECCCCcEEEEEEEEcCCCcee
Confidence 111111221 1223345666 7999988764 3 3
Q ss_pred cEEEEEcCCCccccceeeeEEcCCccccEEEEeCCCCCCEEEEEeC---CCeEEEEeCCCCceEEEEc----CCCCCEEE
Q 003579 114 NMFIWAFKGIEENLAPVGHVKLDDKFTPTCIMHPDTYLNKVIVGSQ---EGSLQLWNISTKKKLYEFK----GWGSSISS 186 (809)
Q Consensus 114 ~i~vWd~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~l~~~~~---dg~i~lwd~~~~~~~~~~~----~~~~~I~~ 186 (809)
.++||+.+ +.+ ..+-+.-.+.....+|-|.| +.|++... ...|.+|. ++|-.-..|. .....|..
T Consensus 238 ~iRVy~Re-G~L----~stSE~v~gLe~~l~WrPsG--~lIA~~q~~~~~~~VvFfE-rNGLrhgeF~l~~~~~~~~v~~ 309 (928)
T PF04762_consen 238 VIRVYSRE-GEL----QSTSEPVDGLEGALSWRPSG--NLIASSQRLPDRHDVVFFE-RNGLRHGEFTLRFDPEEEKVIE 309 (928)
T ss_pred EEEEECCC-ceE----EeccccCCCccCCccCCCCC--CEEEEEEEcCCCcEEEEEe-cCCcEeeeEecCCCCCCceeeE
Confidence 59999987 333 22222233445567899999 77887654 34567776 4554444443 34678999
Q ss_pred EEEcCCCCEEEEEeCCCeEEEEEeeCCeE--EEEEeccCCCcEEEEEEecCCCCEEEEEcCCCcEEEEECCCceeeeeee
Q 003579 187 CVSSPALDVVAVGCSDGKIHVHNVRYDEE--LVTFTHSMRGAVTALAFSSDGQPLLASGASSGVISIWNLEKRRLQSVIR 264 (809)
Q Consensus 187 l~~sp~~~~la~g~~dg~i~iwd~~~~~~--~~~~~~~~~~~V~~l~fs~dg~~~lasg~~dg~I~iwdl~~~~~~~~~~ 264 (809)
++|++++..||+-..|. |.+|-..+-.- .+.+.......+..+.|+|.....|...+.+|.+..+++.-........
T Consensus 310 l~Wn~ds~iLAv~~~~~-vqLWt~~NYHWYLKqei~~~~~~~~~~~~Wdpe~p~~L~v~t~~g~~~~~~~~~~v~~s~~~ 388 (928)
T PF04762_consen 310 LAWNSDSEILAVWLEDR-VQLWTRSNYHWYLKQEIRFSSSESVNFVKWDPEKPLRLHVLTSNGQYEIYDFAWDVSRSPGS 388 (928)
T ss_pred EEECCCCCEEEEEecCC-ceEEEeeCCEEEEEEEEEccCCCCCCceEECCCCCCEEEEEecCCcEEEEEEEEEEEecCCC
Confidence 99999999999988765 99999887652 2333332234566699999877678888877888777653211111100
Q ss_pred cccccceEEEEEecCCC-EEEEEcCCCcEEEEEeeCCCCCceeEEeccCCCCCCeeEEEecCCCEEEEEECCCCEEEEEe
Q 003579 265 EAHDNAIISLHFFANEP-VLMSASADNSIKMWIFDTTDGDPRLLRFRSGHSAPPLCIRFYANGRHILSAGQDRAFRLFSV 343 (809)
Q Consensus 265 ~~h~~~V~~l~~~~~~~-~l~s~s~d~~i~vw~~~~~~~~~~~~~~~~~h~~~v~~i~~~~~~~~l~s~~~dg~i~~wd~ 343 (809)
.|+.. .+++. ....+++-.+....-.|..-...-....+|.+++|++++..+++-..||.+.+|..
T Consensus 389 ------------~~~D~g~vaVI-DG~~lllTpf~~a~VPPPMs~~~l~~~~~v~~vaf~~~~~~~avl~~d~~l~~~~~ 455 (928)
T PF04762_consen 389 ------------SPNDNGTVAVI-DGNKLLLTPFRRAVVPPPMSSYELELPSPVNDVAFSPSNSRFAVLTSDGSLSIYEW 455 (928)
T ss_pred ------------CccCceEEEEE-eCCeEEEecccccCCCchHhceEEcCCCCcEEEEEeCCCCeEEEEECCCCEEEEEe
Confidence 11111 12222 12345555555443322222222244678999999998888999999999999986
Q ss_pred eecccceecchhhHHHHHhhccchhhhhccCceeEEeeccccccccceeEEeecCCceEEEEEeeeeeecceeeecCCCC
Q 003579 344 IQDQQSRELSQRHVAKRARKLKMKEEELKLKPVIAFDCAEIRERDWCNVVTCHMDTAQAYVWRLQNFVLGEHILRPCPEN 423 (809)
Q Consensus 344 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~ 423 (809)
........ ......... . .. ..........
T Consensus 456 ~~~~~~~~-~~~~~~~~~------------------~--------------------------~~-----~~~~~~~~~~ 485 (928)
T PF04762_consen 456 DLKNMWSV-KPPKLLSSI------------------S--------------------------LD-----SMDISDSELP 485 (928)
T ss_pred cCCCcccc-cCcchhhhc------------------c--------------------------cc-----cccccccccc
Confidence 54322110 000000000 0 00 0000000111
Q ss_pred CCCeEEEEEcCCCCEEEEEeCC---CcEEEEECCCCceeeeeeCcccccccCccccEEEEEEcCCCCEEEEEeCcCeEEE
Q 003579 424 PTAVKACTISACGNFAVLGTAG---GWIERFNLQSGISRGSYLDMSERSNYAHNGEVVGVACDSTNTLMISAGYHGDIKV 500 (809)
Q Consensus 424 ~~~v~~v~~s~~g~~l~~g~~~---g~i~i~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~l~s~~~dg~i~i 500 (809)
...+..++|..+..++++...+ +.+.+++............ ...-.+.+..+...+....++.-..+|.+..
T Consensus 486 ~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~q~~~G~v~~ 560 (928)
T PF04762_consen 486 LGSLRQLAWLNDDTLLVLSDSDSNQSKIVLVDIDDSENSASVES-----STEVDGVVLIISSSPDSGSLYIQTNDGKVFQ 560 (928)
T ss_pred cccEEEEEEeCCCEEEEEEecCcccceEEEEEeccCCCceeEEE-----EeccCceEEEEeeCCCCcEEEEEECCCEEEE
Confidence 2567778888877777766654 6777787743332111110 0123345555555555554666677888886
Q ss_pred EECCCCcee-eeeecCCCeEEEEEeeCCC--EEEEE-eCCCeEEEEEcCCCeEEEEEecCCCCeeeEEECCCCCEEEEEe
Q 003579 501 WDFKGRDLK-SRWEVGCSLVKIVYHRVNG--LLATV-ADDLVIRLFDVVALRMVRKFEGHTDRITDFCFSEDGKWLLSSG 576 (809)
Q Consensus 501 wd~~~~~~~-~~~~~~~~i~~~~~s~~~~--~la~~-~~d~~I~v~d~~~~~~~~~~~~h~~~I~~l~fspdg~~l~s~s 576 (809)
.+....... ..+....+-..++...+.. .++.| +..|.+++ .++.+. ..+++++++ +.+|+...
T Consensus 561 ~~~~~~~~~~~~fp~~c~~~~~~~~~~~~~~~~~~GLs~~~~Ly~----n~~~la------~~~tSF~v~--~~~Ll~TT 628 (928)
T PF04762_consen 561 LSSDGELSQIVKFPQPCPWMEVCQINGSEDKRVLFGLSSNGRLYA----NSRLLA------SNCTSFAVT--DSFLLFTT 628 (928)
T ss_pred eecCCCccccccCCCCCcEEEEEEECCccceeEEEEECCCCEEEE----CCEEEe------cCCceEEEE--cCEEEEEe
Confidence 665543222 2233333333344333333 23444 44455543 223222 567888875 44788777
Q ss_pred CCCeEEEEEcC
Q 003579 577 MDGSLRIWDVI 587 (809)
Q Consensus 577 ~D~~I~vwd~~ 587 (809)
....+++.++.
T Consensus 629 ~~h~l~fv~L~ 639 (928)
T PF04762_consen 629 TQHTLKFVHLN 639 (928)
T ss_pred cCceEEEEECc
Confidence 78889999988
No 260
>KOG2314 consensus Translation initiation factor 3, subunit b (eIF-3b) [Translation, ribosomal structure and biogenesis]
Probab=99.43 E-value=2.6e-10 Score=115.97 Aligned_cols=337 Identities=13% Similarity=0.163 Sum_probs=218.1
Q ss_pred EEEEEeeCCeEEEEEeccCCCcEEEEEEecCCCCEEEEEcCCCcEEEEECCCceeeeeeecccccceEEEEEecCCCEEE
Q 003579 205 IHVHNVRYDEELVTFTHSMRGAVTALAFSSDGQPLLASGASSGVISIWNLEKRRLQSVIREAHDNAIISLHFFANEPVLM 284 (809)
Q Consensus 205 i~iwd~~~~~~~~~~~~~~~~~V~~l~fs~dg~~~lasg~~dg~I~iwdl~~~~~~~~~~~~h~~~V~~l~~~~~~~~l~ 284 (809)
...||.........-... .=.=+-+.|||.|. +|++--..| |.+|--++-..++.+. |. .|.-+.|||+.++|+
T Consensus 192 svfwN~~~n~p~~ie~Re-nWTetyv~wSP~GT-YL~t~Hk~G-I~lWGG~~f~r~~RF~--Hp-~Vq~idfSP~EkYLV 265 (698)
T KOG2314|consen 192 SVFWNSKFNEPSLIEERE-NWTETYVRWSPKGT-YLVTFHKQG-IALWGGESFDRIQRFY--HP-GVQFIDFSPNEKYLV 265 (698)
T ss_pred EEEccccCCchhhhhhhh-cceeeeEEecCCce-EEEEEeccc-eeeecCccHHHHHhcc--CC-CceeeecCCccceEE
Confidence 566776544322211111 22457899999999 888876554 8899876666666654 65 589999999999999
Q ss_pred EEcC-----------CCcEEEEEeeCCCCCceeEEeccC---CCCCCeeEEEecCCCEEEEEECCCCEEEEEeeecccce
Q 003579 285 SASA-----------DNSIKMWIFDTTDGDPRLLRFRSG---HSAPPLCIRFYANGRHILSAGQDRAFRLFSVIQDQQSR 350 (809)
Q Consensus 285 s~s~-----------d~~i~vw~~~~~~~~~~~~~~~~~---h~~~v~~i~~~~~~~~l~s~~~dg~i~~wd~~~~~~~~ 350 (809)
|-+. -..+.|||+.++. +.+.+.. ....-.-..|+.|+++++--..+ +|.+|+..+-..
T Consensus 266 T~s~~p~~~~~~d~e~~~l~IWDI~tG~----lkrsF~~~~~~~~~WP~frWS~DdKy~Arm~~~-sisIyEtpsf~l-- 338 (698)
T KOG2314|consen 266 TYSPEPIIVEEDDNEGQQLIIWDIATGL----LKRSFPVIKSPYLKWPIFRWSHDDKYFARMTGN-SISIYETPSFML-- 338 (698)
T ss_pred EecCCccccCcccCCCceEEEEEccccc----hhcceeccCCCccccceEEeccCCceeEEeccc-eEEEEecCceee--
Confidence 9653 2579999998773 3333322 22222356899999999977765 588887543111
Q ss_pred ecchhhHHHHHhhccchhhhhccCceeEEeeccccccccceeEEeecCCceEEEEEeeeeeecceeeecCCCCCCCeEEE
Q 003579 351 ELSQRHVAKRARKLKMKEEELKLKPVIAFDCAEIRERDWCNVVTCHMDTAQAYVWRLQNFVLGEHILRPCPENPTAVKAC 430 (809)
Q Consensus 351 ~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~v~~v 430 (809)
.+... -....|...
T Consensus 339 ------------------------------------------------------ld~Ks------------lki~gIr~F 352 (698)
T KOG2314|consen 339 ------------------------------------------------------LDKKS------------LKISGIRDF 352 (698)
T ss_pred ------------------------------------------------------ecccc------------cCCccccCc
Confidence 00000 112567777
Q ss_pred EEcCCCCEEEEEeCC-----CcEEEEECCCCceeeeeeCcccccccCccccEEEEEEcCCCCEEEEEe----------Cc
Q 003579 431 TISACGNFAVLGTAG-----GWIERFNLQSGISRGSYLDMSERSNYAHNGEVVGVACDSTNTLMISAG----------YH 495 (809)
Q Consensus 431 ~~s~~g~~l~~g~~~-----g~i~i~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~l~s~~----------~d 495 (809)
.|+|.++.|+.=+.. ..+.+..+.+++.++.-. -|+-.=..+.|-.+|.+|+.-- .-
T Consensus 353 swsP~~~llAYwtpe~~~~parvtL~evPs~~~iRt~n--------lfnVsDckLhWQk~gdyLcvkvdR~tK~~~~g~f 424 (698)
T KOG2314|consen 353 SWSPTSNLLAYWTPETNNIPARVTLMEVPSKREIRTKN--------LFNVSDCKLHWQKSGDYLCVKVDRHTKSKVKGQF 424 (698)
T ss_pred ccCCCcceEEEEcccccCCcceEEEEecCccceeeecc--------ceeeeccEEEeccCCcEEEEEEEeeccccccceE
Confidence 888887777654322 245566666665555432 2333333455666677665421 11
Q ss_pred CeEEEEECCCC-ceeeeeecCCCeEEEEEeeCCCEEEEEeCC---CeEEEEEcCC----CeEEEEEecCCCCeeeEEECC
Q 003579 496 GDIKVWDFKGR-DLKSRWEVGCSLVKIVYHRVNGLLATVADD---LVIRLFDVVA----LRMVRKFEGHTDRITDFCFSE 567 (809)
Q Consensus 496 g~i~iwd~~~~-~~~~~~~~~~~i~~~~~s~~~~~la~~~~d---~~I~v~d~~~----~~~~~~~~~h~~~I~~l~fsp 567 (809)
..+.|+.+... -++...+....+...+|-|.|+.+++-+.+ .++.+|.+++ .+++..+.. ...+.+.|+|
T Consensus 425 ~n~eIfrireKdIpve~velke~vi~FaWEP~gdkF~vi~g~~~k~tvsfY~~e~~~~~~~lVk~~dk--~~~N~vfwsP 502 (698)
T KOG2314|consen 425 SNLEIFRIREKDIPVEVVELKESVIAFAWEPHGDKFAVISGNTVKNTVSFYAVETNIKKPSLVKELDK--KFANTVFWSP 502 (698)
T ss_pred eeEEEEEeeccCCCceeeecchheeeeeeccCCCeEEEEEccccccceeEEEeecCCCchhhhhhhcc--cccceEEEcC
Confidence 23556666543 345666777899999999999988876543 5788888773 234444443 4567899999
Q ss_pred CCCEEEEEe---CCCeEEEEEcCCccEEEE-eeeCcceEEEEEcCCCCeEEEEEeCC-----CeEEEeecCc
Q 003579 568 DGKWLLSSG---MDGSLRIWDVILARQIDA-IHVDVSITALSLSPNMDVLATAHVDQ-----NGVYLWVNRC 630 (809)
Q Consensus 568 dg~~l~s~s---~D~~I~vwd~~~~~~i~~-~~~~~~v~~l~~spdg~~lat~~~d~-----~~i~lW~~~~ 630 (809)
.|++++.+. ..|.+..+|..-..+... ...|...+.+.|.|.|+|++|++.-. ++-+||+.+.
T Consensus 503 kG~fvvva~l~s~~g~l~F~D~~~a~~k~~~~~eh~~at~veWDPtGRYvvT~ss~wrhk~d~GYri~tfqG 574 (698)
T KOG2314|consen 503 KGRFVVVAALVSRRGDLEFYDTDYADLKDTASPEHFAATEVEWDPTGRYVVTSSSSWRHKVDNGYRIFTFQG 574 (698)
T ss_pred CCcEEEEEEecccccceEEEecchhhhhhccCccccccccceECCCCCEEEEeeehhhhccccceEEEEeec
Confidence 999998764 578899999885433332 23355689999999999999987632 3688888653
No 261
>COG2706 3-carboxymuconate cyclase [Carbohydrate transport and metabolism]
Probab=99.41 E-value=2.2e-09 Score=104.81 Aligned_cols=302 Identities=13% Similarity=0.156 Sum_probs=202.5
Q ss_pred CCcEEEEECCCc--eeeeeeecccccceEEEEEecCCCEEEEEcC---CCcEEEEEeeCCCCCceeEEeccCCCCCCeeE
Q 003579 246 SGVISIWNLEKR--RLQSVIREAHDNAIISLHFFANEPVLMSASA---DNSIKMWIFDTTDGDPRLLRFRSGHSAPPLCI 320 (809)
Q Consensus 246 dg~I~iwdl~~~--~~~~~~~~~h~~~V~~l~~~~~~~~l~s~s~---d~~i~vw~~~~~~~~~~~~~~~~~h~~~v~~i 320 (809)
+.-|.+|++.+. ++.......+.+.++-|+|+|+++.|.++.. +|.|-.|.++..++....+........+.+.+
T Consensus 15 s~gI~v~~ld~~~g~l~~~~~v~~~~nptyl~~~~~~~~LY~v~~~~~~ggvaay~iD~~~G~Lt~ln~~~~~g~~p~yv 94 (346)
T COG2706 15 SQGIYVFNLDTKTGELSLLQLVAELGNPTYLAVNPDQRHLYVVNEPGEEGGVAAYRIDPDDGRLTFLNRQTLPGSPPCYV 94 (346)
T ss_pred CCceEEEEEeCcccccchhhhccccCCCceEEECCCCCEEEEEEecCCcCcEEEEEEcCCCCeEEEeeccccCCCCCeEE
Confidence 567999998743 3222222357788999999999999988755 58899999998777666665555556677999
Q ss_pred EEecCCCEEEEEEC-CCCEEEEEeeecccceecchhhHHHHHhhccchhhhhccCceeEEeeccccccccceeEEeecCC
Q 003579 321 RFYANGRHILSAGQ-DRAFRLFSVIQDQQSRELSQRHVAKRARKLKMKEEELKLKPVIAFDCAEIRERDWCNVVTCHMDT 399 (809)
Q Consensus 321 ~~~~~~~~l~s~~~-dg~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~ 399 (809)
+.+++|++++++.. -|.|.++-+..........+. ..|.+.
T Consensus 95 svd~~g~~vf~AnY~~g~v~v~p~~~dG~l~~~v~~--------------------------------------~~h~g~ 136 (346)
T COG2706 95 SVDEDGRFVFVANYHSGSVSVYPLQADGSLQPVVQV--------------------------------------VKHTGS 136 (346)
T ss_pred EECCCCCEEEEEEccCceEEEEEcccCCccccceee--------------------------------------eecCCC
Confidence 99999999998864 578888887664433322110 000000
Q ss_pred ceEEEEEeeeeeecceeeecCCCCCCCeEEEEEcCCCCEEEEEeCC-CcEEEEECCCCceeeeeeCcccccccCccccEE
Q 003579 400 AQAYVWRLQNFVLGEHILRPCPENPTAVKACTISACGNFAVLGTAG-GWIERFNLQSGISRGSYLDMSERSNYAHNGEVV 478 (809)
Q Consensus 400 ~~~~~w~~~~~~~~~~~~~~~~~~~~~v~~v~~s~~g~~l~~g~~~-g~i~i~~~~~~~~~~~~~~~~~~~~~~h~~~v~ 478 (809)
+ ...+.....+....++|+++++++..-. -.|.+|++..|......... ......-+
T Consensus 137 -------------~----p~~rQ~~~h~H~a~~tP~~~~l~v~DLG~Dri~~y~~~dg~L~~~~~~~-----v~~G~GPR 194 (346)
T COG2706 137 -------------G----PHERQESPHVHSANFTPDGRYLVVPDLGTDRIFLYDLDDGKLTPADPAE-----VKPGAGPR 194 (346)
T ss_pred -------------C----CCccccCCccceeeeCCCCCEEEEeecCCceEEEEEcccCccccccccc-----cCCCCCcc
Confidence 0 0011122447888999999999887654 58999999987765433211 13345678
Q ss_pred EEEEcCCCCEEEEEe-CcCeEEEEECCCC-ceeeee----------ecCCCeEEEEEeeCCCEEEEEeC-CCeEEEEEcC
Q 003579 479 GVACDSTNTLMISAG-YHGDIKVWDFKGR-DLKSRW----------EVGCSLVKIVYHRVNGLLATVAD-DLVIRLFDVV 545 (809)
Q Consensus 479 ~l~~~~~~~~l~s~~-~dg~i~iwd~~~~-~~~~~~----------~~~~~i~~~~~s~~~~~la~~~~-d~~I~v~d~~ 545 (809)
.|+|+|++++..... .+++|.+|.++.. ..+..+ ........+.+++||++|.++.. ...|.+|.+.
T Consensus 195 Hi~FHpn~k~aY~v~EL~stV~v~~y~~~~g~~~~lQ~i~tlP~dF~g~~~~aaIhis~dGrFLYasNRg~dsI~~f~V~ 274 (346)
T COG2706 195 HIVFHPNGKYAYLVNELNSTVDVLEYNPAVGKFEELQTIDTLPEDFTGTNWAAAIHISPDGRFLYASNRGHDSIAVFSVD 274 (346)
T ss_pred eEEEcCCCcEEEEEeccCCEEEEEEEcCCCceEEEeeeeccCccccCCCCceeEEEECCCCCEEEEecCCCCeEEEEEEc
Confidence 999999999887665 6899999998873 222222 22366778899999999998765 3477777665
Q ss_pred C--CeE--EEEEecCCCCeeeEEECCCCCEEEEEeCC-CeEEEEEcC--CccEEEEeee--CcceEEEEEc
Q 003579 546 A--LRM--VRKFEGHTDRITDFCFSEDGKWLLSSGMD-GSLRIWDVI--LARQIDAIHV--DVSITALSLS 607 (809)
Q Consensus 546 ~--~~~--~~~~~~h~~~I~~l~fspdg~~l~s~s~D-~~I~vwd~~--~~~~i~~~~~--~~~v~~l~~s 607 (809)
. +++ +.....+...-.++.|+|+|++|+++..| ..|.+|.+. +|++-..... -....||.|.
T Consensus 275 ~~~g~L~~~~~~~teg~~PR~F~i~~~g~~Liaa~q~sd~i~vf~~d~~TG~L~~~~~~~~~p~Pvcv~f~ 345 (346)
T COG2706 275 PDGGKLELVGITPTEGQFPRDFNINPSGRFLIAANQKSDNITVFERDKETGRLTLLGRYAVVPEPVCVKFL 345 (346)
T ss_pred CCCCEEEEEEEeccCCcCCccceeCCCCCEEEEEccCCCcEEEEEEcCCCceEEecccccCCCCcEEEEEc
Confidence 3 332 22233344557899999999999999865 468888654 5665444331 1226666664
No 262
>KOG4547 consensus WD40 repeat-containing protein [General function prediction only]
Probab=99.41 E-value=5.1e-11 Score=122.76 Aligned_cols=197 Identities=17% Similarity=0.258 Sum_probs=153.9
Q ss_pred CCEEEEEeCCCcEEEEEcCCCccccceeeeEEcCCccccEE-------------------EEeCCCCCCEEEEEeCCCeE
Q 003579 103 GEHILSIDIDGNMFIWAFKGIEENLAPVGHVKLDDKFTPTC-------------------IMHPDTYLNKVIVGSQEGSL 163 (809)
Q Consensus 103 g~~l~s~~~dg~i~vWd~~~~~~~~~~~~~~~~~~~~~~~~-------------------~~~p~~~~~~l~~~~~dg~i 163 (809)
+.++|..+.||.+++|+...++.+.............+... ..+.++ ..++.|...|.|
T Consensus 5 ~~~~A~~~~~g~l~iw~t~~~~~~~e~~p~~~~s~t~~~~~w~L~~~~s~~k~~~~~~~~~~s~~t--~~lvlgt~~g~v 82 (541)
T KOG4547|consen 5 LDYFALSTGDGRLRIWDTAKNQLQQEFAPIASLSGTCTYTKWGLSADYSPMKWLSLEKAKKASLDT--SMLVLGTPQGSV 82 (541)
T ss_pred hheEeecCCCCeEEEEEccCceeeeeeccchhccCcceeEEEEEEeccchHHHHhHHHHhhccCCc--eEEEeecCCccE
Confidence 56788888889999999888776322111111111111110 112233 468889999999
Q ss_pred EEEeCCCCceEEEEc--CCCCCEEEEEEcCCCCEEEEEeCCCeEEEEEeeCCeEEEEEeccCCCcEEEEEEecCCCCEEE
Q 003579 164 QLWNISTKKKLYEFK--GWGSSISSCVSSPALDVVAVGCSDGKIHVHNVRYDEELVTFTHSMRGAVTALAFSSDGQPLLA 241 (809)
Q Consensus 164 ~lwd~~~~~~~~~~~--~~~~~I~~l~~sp~~~~la~g~~dg~i~iwd~~~~~~~~~~~~~~~~~V~~l~fs~dg~~~la 241 (809)
.+|++..|+..+.+. .|.+.|.++.++.+...+.+++.|+.+..|+...++.++.+... +..+.+++.+|||. +|+
T Consensus 83 ~~ys~~~g~it~~~st~~h~~~v~~~~~~~~~~ciyS~~ad~~v~~~~~~~~~~~~~~~~~-~~~~~sl~is~D~~-~l~ 160 (541)
T KOG4547|consen 83 LLYSVAGGEITAKLSTDKHYGNVNEILDAQRLGCIYSVGADLKVVYILEKEKVIIRIWKEQ-KPLVSSLCISPDGK-ILL 160 (541)
T ss_pred EEEEecCCeEEEEEecCCCCCcceeeecccccCceEecCCceeEEEEecccceeeeeeccC-CCccceEEEcCCCC-EEE
Confidence 999999999998886 68999999999999999999999999999999999999999887 77899999999998 888
Q ss_pred EEcCCCcEEEEECCCceeeeeeecccccceEEEEEecC-----CCEEE-EEcCCCcEEEEEeeCCCCCcee
Q 003579 242 SGASSGVISIWNLEKRRLQSVIREAHDNAIISLHFFAN-----EPVLM-SASADNSIKMWIFDTTDGDPRL 306 (809)
Q Consensus 242 sg~~dg~I~iwdl~~~~~~~~~~~~h~~~V~~l~~~~~-----~~~l~-s~s~d~~i~vw~~~~~~~~~~~ 306 (809)
+++ +.|.+||+++++.+..+. +|.++|++++|..+ |.+++ +...+.-+.+|-.+........
T Consensus 161 ~as--~~ik~~~~~~kevv~~ft-gh~s~v~t~~f~~~~~g~~G~~vLssa~~~r~i~~w~v~~~~kkks~ 228 (541)
T KOG4547|consen 161 TAS--RQIKVLDIETKEVVITFT-GHGSPVRTLSFTTLIDGIIGKYVLSSAAAERGITVWVVEKEDKKKSL 228 (541)
T ss_pred ecc--ceEEEEEccCceEEEEec-CCCcceEEEEEEEeccccccceeeeccccccceeEEEEEcccccchh
Confidence 876 689999999999999999 99999999999887 55444 4555777889988765443333
No 263
>TIGR03300 assembly_YfgL outer membrane assembly lipoprotein YfgL. Members of this protein family are YfgL, a lipoprotein component of a complex that acts protein insertion into the bacterial outer membrane. Other members of this complex are NlpB, YfiO, and YaeT. This protein contains multiple copies of a repeat that, in other contexts, are associated with binding of the coenzyme PQQ.
Probab=99.35 E-value=1.1e-09 Score=117.84 Aligned_cols=300 Identities=12% Similarity=0.094 Sum_probs=186.8
Q ss_pred CEEEEEeCCCeEEEEeCCCCceEEEEcCCCCCEEEEEEcCCCCEEEEEeCCCeEEEEEeeCCeEEEEEeccCCCcEEEEE
Q 003579 152 NKVIVGSQEGSLQLWNISTKKKLYEFKGWGSSISSCVSSPALDVVAVGCSDGKIHVHNVRYDEELVTFTHSMRGAVTALA 231 (809)
Q Consensus 152 ~~l~~~~~dg~i~lwd~~~~~~~~~~~~~~~~I~~l~~sp~~~~la~g~~dg~i~iwd~~~~~~~~~~~~~~~~~V~~l~ 231 (809)
+++++++.+|.|..+|..+|+.+..+........... .++..+++++.+|.+..+|..+|+.+.+.... +.+.+..
T Consensus 66 ~~v~v~~~~g~v~a~d~~tG~~~W~~~~~~~~~~~p~--v~~~~v~v~~~~g~l~ald~~tG~~~W~~~~~--~~~~~~p 141 (377)
T TIGR03300 66 GKVYAADADGTVVALDAETGKRLWRVDLDERLSGGVG--ADGGLVFVGTEKGEVIALDAEDGKELWRAKLS--SEVLSPP 141 (377)
T ss_pred CEEEEECCCCeEEEEEccCCcEeeeecCCCCcccceE--EcCCEEEEEcCCCEEEEEECCCCcEeeeeccC--ceeecCC
Confidence 6799999999999999999999988765433222222 24678889999999999999999988776643 3333222
Q ss_pred EecCCCCEEEEEcCCCcEEEEECCCceeeeeeecccccce-----EEEEEecCCCEEEEEcCCCcEEEEEeeCCCCCcee
Q 003579 232 FSSDGQPLLASGASSGVISIWNLEKRRLQSVIREAHDNAI-----ISLHFFANEPVLMSASADNSIKMWIFDTTDGDPRL 306 (809)
Q Consensus 232 fs~dg~~~lasg~~dg~I~iwdl~~~~~~~~~~~~h~~~V-----~~l~~~~~~~~l~s~s~d~~i~vw~~~~~~~~~~~ 306 (809)
...++ .++.++.+|.|..||.++|+.+.... .....+ .+.... + ..++.+..++.+..+|...+...++.
T Consensus 142 ~v~~~--~v~v~~~~g~l~a~d~~tG~~~W~~~-~~~~~~~~~~~~sp~~~-~-~~v~~~~~~g~v~ald~~tG~~~W~~ 216 (377)
T TIGR03300 142 LVANG--LVVVRTNDGRLTALDAATGERLWTYS-RVTPALTLRGSASPVIA-D-GGVLVGFAGGKLVALDLQTGQPLWEQ 216 (377)
T ss_pred EEECC--EEEEECCCCeEEEEEcCCCceeeEEc-cCCCceeecCCCCCEEE-C-CEEEEECCCCEEEEEEccCCCEeeee
Confidence 22233 46667789999999999998877765 211111 111121 2 36777777888877766544321111
Q ss_pred EEe-ccCCCC--CCeeEEEec--CCCEEEEEECCCCEEEEEeeecccceecchhhHHHHHhhccchhhhhccCceeEEee
Q 003579 307 LRF-RSGHSA--PPLCIRFYA--NGRHILSAGQDRAFRLFSVIQDQQSRELSQRHVAKRARKLKMKEEELKLKPVIAFDC 381 (809)
Q Consensus 307 ~~~-~~~h~~--~v~~i~~~~--~~~~l~s~~~dg~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~ 381 (809)
... ..+... ....+.-.| .+..++.++.+|.+..+|..+++..
T Consensus 217 ~~~~~~g~~~~~~~~~~~~~p~~~~~~vy~~~~~g~l~a~d~~tG~~~-------------------------------- 264 (377)
T TIGR03300 217 RVALPKGRTELERLVDVDGDPVVDGGQVYAVSYQGRVAALDLRSGRVL-------------------------------- 264 (377)
T ss_pred ccccCCCCCchhhhhccCCccEEECCEEEEEEcCCEEEEEECCCCcEE--------------------------------
Confidence 000 000000 000010111 3457778888899999987655322
Q ss_pred ccccccccceeEEeecCCceEEEEEeeeeeecceeeecCCCCCCCeEEEEEcCCCCEEEEEeCCCcEEEEECCCCceeee
Q 003579 382 AEIRERDWCNVVTCHMDTAQAYVWRLQNFVLGEHILRPCPENPTAVKACTISACGNFAVLGTAGGWIERFNLQSGISRGS 461 (809)
Q Consensus 382 ~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~v~~v~~s~~g~~l~~g~~~g~i~i~~~~~~~~~~~ 461 (809)
|.... ..... ....++.+++++.+|.++.+|..+|+.+..
T Consensus 265 -----------------------W~~~~---------------~~~~~--p~~~~~~vyv~~~~G~l~~~d~~tG~~~W~ 304 (377)
T TIGR03300 265 -----------------------WKRDA---------------SSYQG--PAVDDNRLYVTDADGVVVALDRRSGSELWK 304 (377)
T ss_pred -----------------------Eeecc---------------CCccC--ceEeCCEEEEECCCCeEEEEECCCCcEEEc
Confidence 22110 00011 112467888889999999999999987765
Q ss_pred eeCcccccccCccccEEEEEEcCCCCEEEEEeCcCeEEEEECCCCceeeeeecCC-CeEEEEEeeCCCEEEEEeCCCeEE
Q 003579 462 YLDMSERSNYAHNGEVVGVACDSTNTLMISAGYHGDIKVWDFKGRDLKSRWEVGC-SLVKIVYHRVNGLLATVADDLVIR 540 (809)
Q Consensus 462 ~~~~~~~~~~~h~~~v~~l~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~-~i~~~~~s~~~~~la~~~~d~~I~ 540 (809)
... ..........+ .+..+++++.+|.|.++|..+++.+..+..+. .+..--... ++.|++++.||.|+
T Consensus 305 ~~~-------~~~~~~ssp~i--~g~~l~~~~~~G~l~~~d~~tG~~~~~~~~~~~~~~~sp~~~-~~~l~v~~~dG~l~ 374 (377)
T TIGR03300 305 NDE-------LKYRQLTAPAV--VGGYLVVGDFEGYLHWLSREDGSFVARLKTDGSGIASPPVVV-GDGLLVQTRDGDLY 374 (377)
T ss_pred ccc-------ccCCccccCEE--ECCEEEEEeCCCEEEEEECCCCCEEEEEEcCCCccccCCEEE-CCEEEEEeCCceEE
Confidence 421 11111222222 35688889999999999999999999888654 333222222 34578888999887
Q ss_pred EE
Q 003579 541 LF 542 (809)
Q Consensus 541 v~ 542 (809)
.|
T Consensus 375 ~~ 376 (377)
T TIGR03300 375 AF 376 (377)
T ss_pred Ee
Confidence 65
No 264
>TIGR02800 propeller_TolB tol-pal system beta propeller repeat protein TolB. The Tol-PAL system is required for bacterial outer membrane integrity. E. coli TolB is involved in the tonB-independent uptake of group A colicins (colicins A, E1, E2, E3 and K), and is necessary for the colicins to reach their respective targets after initial binding to the bacteria. It is also involved in uptake of filamentous DNA. Study of its structure suggest that the TolB protein might be involved in the recycling of peptidoglycan or in its covalent linking with lipoproteins. The Tol-Pal system is also implicated in pathogenesis of E. coli, Haemophilus ducreyi, Salmonella enterica and Vibrio cholerae, but the mechanism(s) is unclear.
Probab=99.35 E-value=1.9e-10 Score=125.82 Aligned_cols=186 Identities=15% Similarity=0.062 Sum_probs=137.1
Q ss_pred CCeEEEEEcCCCCEEEEEeCC---CcEEEEECCCCceeeeeeCcccccccCccccEEEEEEcCCCCEEEE-EeCcC--eE
Q 003579 425 TAVKACTISACGNFAVLGTAG---GWIERFNLQSGISRGSYLDMSERSNYAHNGEVVGVACDSTNTLMIS-AGYHG--DI 498 (809)
Q Consensus 425 ~~v~~v~~s~~g~~l~~g~~~---g~i~i~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~l~s-~~~dg--~i 498 (809)
..+.+.+|+|+|++++..... ..|++|++.++...... .+.+.+.+++|+|+++.|+. .+.++ .|
T Consensus 190 ~~~~~p~~Spdg~~la~~~~~~~~~~i~v~d~~~g~~~~~~---------~~~~~~~~~~~spDg~~l~~~~~~~~~~~i 260 (417)
T TIGR02800 190 EPILSPAWSPDGQKLAYVSFESGKPEIYVQDLATGQREKVA---------SFPGMNGAPAFSPDGSKLAVSLSKDGNPDI 260 (417)
T ss_pred CceecccCCCCCCEEEEEEcCCCCcEEEEEECCCCCEEEee---------cCCCCccceEECCCCCEEEEEECCCCCccE
Confidence 467888999999999987654 47999999988654322 34456677899999987764 44444 58
Q ss_pred EEEECCCCceeeeeecCCCeEEEEEeeCCCEEEEEeCC-C--eEEEEEcCCCeEEEEEecCCCCeeeEEECCCCCEEEEE
Q 003579 499 KVWDFKGRDLKSRWEVGCSLVKIVYHRVNGLLATVADD-L--VIRLFDVVALRMVRKFEGHTDRITDFCFSEDGKWLLSS 575 (809)
Q Consensus 499 ~iwd~~~~~~~~~~~~~~~i~~~~~s~~~~~la~~~~d-~--~I~v~d~~~~~~~~~~~~h~~~I~~l~fspdg~~l~s~ 575 (809)
++||+.+++...............|+|+++.|+..+.. + .|+++|+.+++.. .+..+...+....|+|||++|+.+
T Consensus 261 ~~~d~~~~~~~~l~~~~~~~~~~~~s~dg~~l~~~s~~~g~~~iy~~d~~~~~~~-~l~~~~~~~~~~~~spdg~~i~~~ 339 (417)
T TIGR02800 261 YVMDLDGKQLTRLTNGPGIDTEPSWSPDGKSIAFTSDRGGSPQIYMMDADGGEVR-RLTFRGGYNASPSWSPDGDLIAFV 339 (417)
T ss_pred EEEECCCCCEEECCCCCCCCCCEEECCCCCEEEEEECCCCCceEEEEECCCCCEE-EeecCCCCccCeEECCCCCEEEEE
Confidence 89999887665444444445577899999988877653 2 6888898877643 444456677889999999999988
Q ss_pred eCCC---eEEEEEcCCccEEEEeeeCcceEEEEEcCCCCeEEEEEeCCC
Q 003579 576 GMDG---SLRIWDVILARQIDAIHVDVSITALSLSPNMDVLATAHVDQN 621 (809)
Q Consensus 576 s~D~---~I~vwd~~~~~~i~~~~~~~~v~~l~~spdg~~lat~~~d~~ 621 (809)
+.++ .|.+||+.++... .+..........|+|||++|+.+..++.
T Consensus 340 ~~~~~~~~i~~~d~~~~~~~-~l~~~~~~~~p~~spdg~~l~~~~~~~~ 387 (417)
T TIGR02800 340 HREGGGFNIAVMDLDGGGER-VLTDTGLDESPSFAPNGRMILYATTRGG 387 (417)
T ss_pred EccCCceEEEEEeCCCCCeE-EccCCCCCCCceECCCCCEEEEEEeCCC
Confidence 8776 7999999886543 3332333556789999999999888763
No 265
>KOG1354 consensus Serine/threonine protein phosphatase 2A, regulatory subunit [Signal transduction mechanisms]
Probab=99.35 E-value=1.2e-10 Score=111.46 Aligned_cols=274 Identities=16% Similarity=0.231 Sum_probs=180.9
Q ss_pred cccceEEEEEecCCCEEEEEcCCCcEEEEEeeCCC-CCceeEEeccCCC------------CCCeeEEEecCC--CEEEE
Q 003579 267 HDNAIISLHFFANEPVLMSASADNSIKMWIFDTTD-GDPRLLRFRSGHS------------APPLCIRFYANG--RHILS 331 (809)
Q Consensus 267 h~~~V~~l~~~~~~~~l~s~s~d~~i~vw~~~~~~-~~~~~~~~~~~h~------------~~v~~i~~~~~~--~~l~s 331 (809)
...-|.++.|...|.+|++|..+|.|.++.-+... +.......+..|. ..|..++|.+++ ..++.
T Consensus 24 eadiis~vef~~~Ge~LatGdkgGRVv~f~r~~~~~~ey~~~t~fqshepEFDYLkSleieEKinkIrw~~~~n~a~FLl 103 (433)
T KOG1354|consen 24 EADIISAVEFDHYGERLATGDKGGRVVLFEREKLYKGEYNFQTEFQSHEPEFDYLKSLEIEEKINKIRWLDDGNLAEFLL 103 (433)
T ss_pred hhcceeeEEeecccceEeecCCCCeEEEeecccccccceeeeeeeeccCcccchhhhhhhhhhhhhceecCCCCccEEEE
Confidence 44568999999999999999999999998543332 2333444444453 468889999854 56778
Q ss_pred EECCCCEEEEEeeecccceecchhhHHHHHhhccchhhhhccCceeEEeeccccccccceeEEeecCCceEEEEEeeeee
Q 003579 332 AGQDRAFRLFSVIQDQQSRELSQRHVAKRARKLKMKEEELKLKPVIAFDCAEIRERDWCNVVTCHMDTAQAYVWRLQNFV 411 (809)
Q Consensus 332 ~~~dg~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~ 411 (809)
.+.|.++++|.+.......+-.. ++.
T Consensus 104 stNdktiKlWKi~er~~k~~~~~------------------~~~------------------------------------ 129 (433)
T KOG1354|consen 104 STNDKTIKLWKIRERGSKKEGYN------------------LPE------------------------------------ 129 (433)
T ss_pred ecCCcceeeeeeecccccccccc------------------ccc------------------------------------
Confidence 88999999999865433221000 000
Q ss_pred ecceeeecCCCCCCCeEEE---EEcCCCCEEEEEeCCCcEEEEECCCCceeeeeeCcccccccCccccEEEEEEcCCCCE
Q 003579 412 LGEHILRPCPENPTAVKAC---TISACGNFAVLGTAGGWIERFNLQSGISRGSYLDMSERSNYAHNGEVVGVACDSTNTL 488 (809)
Q Consensus 412 ~~~~~~~~~~~~~~~v~~v---~~s~~g~~l~~g~~~g~i~i~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~ 488 (809)
......++++ .+.++...+.. .+++.+. .+|...|.++.++.|+..
T Consensus 130 ---------~~~~~~~~~lr~p~~~~~~~~vea---------------~prRv~a-------NaHtyhiNSIS~NsD~Et 178 (433)
T KOG1354|consen 130 ---------EGPPGTITSLRLPVEGRHDLEVEA---------------SPRRVYA-------NAHTYHINSISVNSDKET 178 (433)
T ss_pred ---------cCCCCccceeeceeeccccceeee---------------eeeeecc-------ccceeEeeeeeecCccce
Confidence 0000111111 11111111111 1222332 389999999999999998
Q ss_pred EEEEeCcCeEEEEECCCCc-eeeeee--------cCCCeEEEEEeeC-CCEEEEEeCCCeEEEEEcCCCeEE----EE--
Q 003579 489 MISAGYHGDIKVWDFKGRD-LKSRWE--------VGCSLVKIVYHRV-NGLLATVADDLVIRLFDVVALRMV----RK-- 552 (809)
Q Consensus 489 l~s~~~dg~i~iwd~~~~~-~~~~~~--------~~~~i~~~~~s~~-~~~la~~~~d~~I~v~d~~~~~~~----~~-- 552 (809)
++++. |=.|.+|++.-.. ...... ...-|++..|||. ..+++..+..|+|++-|++...+- ..
T Consensus 179 ~lSAD-dLRINLWnlei~d~sFnIVDIKP~nmEeLteVITsaEFhp~~cn~f~YSSSKGtIrLcDmR~~aLCd~hsKlfE 257 (433)
T KOG1354|consen 179 FLSAD-DLRINLWNLEIIDQSFNIVDIKPANMEELTEVITSAEFHPHHCNVFVYSSSKGTIRLCDMRQSALCDAHSKLFE 257 (433)
T ss_pred Eeecc-ceeeeeccccccCCceeEEEccccCHHHHHHHHhhhccCHhHccEEEEecCCCcEEEeechhhhhhcchhhhhc
Confidence 88764 5789999986322 211111 1256888999995 567888889999999999853221 11
Q ss_pred ----------EecCCCCeeeEEECCCCCEEEEEeCCCeEEEEEc-CCccEEEEeeeCcc----------------eEEEE
Q 003579 553 ----------FEGHTDRITDFCFSEDGKWLLSSGMDGSLRIWDV-ILARQIDAIHVDVS----------------ITALS 605 (809)
Q Consensus 553 ----------~~~h~~~I~~l~fspdg~~l~s~s~D~~I~vwd~-~~~~~i~~~~~~~~----------------v~~l~ 605 (809)
|.+--..|.++.||++|+|+++-+. -+|++||+ ...+++..+..|.. -..++
T Consensus 258 epedp~~rsffseiIsSISDvKFs~sGryilsRDy-ltvk~wD~nme~~pv~t~~vh~~lr~kLc~lYEnD~IfdKFec~ 336 (433)
T KOG1354|consen 258 EPEDPSSRSFFSEIISSISDVKFSHSGRYILSRDY-LTVKLWDLNMEAKPVETYPVHEYLRSKLCSLYENDAIFDKFECS 336 (433)
T ss_pred cccCCcchhhHHHHhhhhhceEEccCCcEEEEecc-ceeEEEeccccCCcceEEeehHhHHHHHHHHhhccchhheeEEE
Confidence 1222346899999999999998654 57999999 45677777765431 35689
Q ss_pred EcCCCCeEEEEEeCCCeEEEeec
Q 003579 606 LSPNMDVLATAHVDQNGVYLWVN 628 (809)
Q Consensus 606 ~spdg~~lat~~~d~~~i~lW~~ 628 (809)
||.++.+++||+-... ++++++
T Consensus 337 ~sg~~~~v~TGsy~n~-frvf~~ 358 (433)
T KOG1354|consen 337 WSGNDSYVMTGSYNNV-FRVFNL 358 (433)
T ss_pred EcCCcceEecccccce-EEEecC
Confidence 9999999999999884 888884
No 266
>TIGR02800 propeller_TolB tol-pal system beta propeller repeat protein TolB. The Tol-PAL system is required for bacterial outer membrane integrity. E. coli TolB is involved in the tonB-independent uptake of group A colicins (colicins A, E1, E2, E3 and K), and is necessary for the colicins to reach their respective targets after initial binding to the bacteria. It is also involved in uptake of filamentous DNA. Study of its structure suggest that the TolB protein might be involved in the recycling of peptidoglycan or in its covalent linking with lipoproteins. The Tol-Pal system is also implicated in pathogenesis of E. coli, Haemophilus ducreyi, Salmonella enterica and Vibrio cholerae, but the mechanism(s) is unclear.
Probab=99.34 E-value=2.6e-10 Score=124.68 Aligned_cols=176 Identities=16% Similarity=0.143 Sum_probs=121.0
Q ss_pred eEEEEeCCCCceEEEEcCCCCCEEEEEEcCCCCEEEEEeCC---CeEEEEEeeCCeEEEEEeccCCCcEEEEEEecCCCC
Q 003579 162 SLQLWNISTKKKLYEFKGWGSSISSCVSSPALDVVAVGCSD---GKIHVHNVRYDEELVTFTHSMRGAVTALAFSSDGQP 238 (809)
Q Consensus 162 ~i~lwd~~~~~~~~~~~~~~~~I~~l~~sp~~~~la~g~~d---g~i~iwd~~~~~~~~~~~~~~~~~V~~l~fs~dg~~ 238 (809)
.|.++|... ...+.+..+...+.+.+|+|+|++|+.+... ..|++||+.+++...... . .+.+.+++|+|||+.
T Consensus 171 ~l~~~d~~g-~~~~~l~~~~~~~~~p~~Spdg~~la~~~~~~~~~~i~v~d~~~g~~~~~~~-~-~~~~~~~~~spDg~~ 247 (417)
T TIGR02800 171 ELQVADYDG-ANPQTITRSREPILSPAWSPDGQKLAYVSFESGKPEIYVQDLATGQREKVAS-F-PGMNGAPAFSPDGSK 247 (417)
T ss_pred eEEEEcCCC-CCCEEeecCCCceecccCCCCCCEEEEEEcCCCCcEEEEEECCCCCEEEeec-C-CCCccceEECCCCCE
Confidence 688888754 4445555667789999999999999987654 479999998876543322 2 456778999999985
Q ss_pred EEEEEcCCC--cEEEEECCCceeeeeeecccccceEEEEEecCCCEEEEEcC-CCcEEEEEeeCCCCCceeEEeccCCCC
Q 003579 239 LLASGASSG--VISIWNLEKRRLQSVIREAHDNAIISLHFFANEPVLMSASA-DNSIKMWIFDTTDGDPRLLRFRSGHSA 315 (809)
Q Consensus 239 ~lasg~~dg--~I~iwdl~~~~~~~~~~~~h~~~V~~l~~~~~~~~l~s~s~-d~~i~vw~~~~~~~~~~~~~~~~~h~~ 315 (809)
++++.+.++ .|.+||+.++...... .+........|+|+++.|+.++. ++...+|.++...+..+. +..+..
T Consensus 248 l~~~~~~~~~~~i~~~d~~~~~~~~l~--~~~~~~~~~~~s~dg~~l~~~s~~~g~~~iy~~d~~~~~~~~---l~~~~~ 322 (417)
T TIGR02800 248 LAVSLSKDGNPDIYVMDLDGKQLTRLT--NGPGIDTEPSWSPDGKSIAFTSDRGGSPQIYMMDADGGEVRR---LTFRGG 322 (417)
T ss_pred EEEEECCCCCccEEEEECCCCCEEECC--CCCCCCCCEEECCCCCEEEEEECCCCCceEEEEECCCCCEEE---eecCCC
Confidence 555555544 5999999887654333 34455567899999998776554 455455555544433222 223445
Q ss_pred CCeeEEEecCCCEEEEEECCC---CEEEEEeee
Q 003579 316 PPLCIRFYANGRHILSAGQDR---AFRLFSVIQ 345 (809)
Q Consensus 316 ~v~~i~~~~~~~~l~s~~~dg---~i~~wd~~~ 345 (809)
......|+|+|++++.++.++ .|.+|++.+
T Consensus 323 ~~~~~~~spdg~~i~~~~~~~~~~~i~~~d~~~ 355 (417)
T TIGR02800 323 YNASPSWSPDGDLIAFVHREGGGFNIAVMDLDG 355 (417)
T ss_pred CccCeEECCCCCEEEEEEccCCceEEEEEeCCC
Confidence 667889999999999888765 566666543
No 267
>PRK04792 tolB translocation protein TolB; Provisional
Probab=99.34 E-value=3.6e-10 Score=122.91 Aligned_cols=172 Identities=16% Similarity=0.176 Sum_probs=114.4
Q ss_pred eEEEEeCCCCceEEEEcCCCCCEEEEEEcCCCCEEEEEeCC---CeEEEEEeeCCeEEEEEeccCCCcEEEEEEecCCCC
Q 003579 162 SLQLWNISTKKKLYEFKGWGSSISSCVSSPALDVVAVGCSD---GKIHVHNVRYDEELVTFTHSMRGAVTALAFSSDGQP 238 (809)
Q Consensus 162 ~i~lwd~~~~~~~~~~~~~~~~I~~l~~sp~~~~la~g~~d---g~i~iwd~~~~~~~~~~~~~~~~~V~~l~fs~dg~~ 238 (809)
.|.++|...... +.+..+...+.+..|+|||+.|+..+.+ ..|.+||+.+++... +... .+.....+|+|||+.
T Consensus 199 ~l~i~d~dG~~~-~~l~~~~~~~~~p~wSPDG~~La~~s~~~g~~~L~~~dl~tg~~~~-lt~~-~g~~~~~~wSPDG~~ 275 (448)
T PRK04792 199 QLMIADYDGYNE-QMLLRSPEPLMSPAWSPDGRKLAYVSFENRKAEIFVQDIYTQVREK-VTSF-PGINGAPRFSPDGKK 275 (448)
T ss_pred EEEEEeCCCCCc-eEeecCCCcccCceECCCCCEEEEEEecCCCcEEEEEECCCCCeEE-ecCC-CCCcCCeeECCCCCE
Confidence 677778654433 4455567789999999999999876543 368889998876533 2221 344567899999995
Q ss_pred EEEEEcCCCc--EEEEECCCceeeeeeecccccceEEEEEecCCCEEEEEc-CCCcEEEEEeeCCCCCceeEEeccCCCC
Q 003579 239 LLASGASSGV--ISIWNLEKRRLQSVIREAHDNAIISLHFFANEPVLMSAS-ADNSIKMWIFDTTDGDPRLLRFRSGHSA 315 (809)
Q Consensus 239 ~lasg~~dg~--I~iwdl~~~~~~~~~~~~h~~~V~~l~~~~~~~~l~s~s-~d~~i~vw~~~~~~~~~~~~~~~~~h~~ 315 (809)
++++.+.+|. |.++|+.+++.... . .+........|+||++.|+..+ .++...+|.++..++..+.+. ..++
T Consensus 276 La~~~~~~g~~~Iy~~dl~tg~~~~l-t-~~~~~~~~p~wSpDG~~I~f~s~~~g~~~Iy~~dl~~g~~~~Lt-~~g~-- 350 (448)
T PRK04792 276 LALVLSKDGQPEIYVVDIATKALTRI-T-RHRAIDTEPSWHPDGKSLIFTSERGGKPQIYRVNLASGKVSRLT-FEGE-- 350 (448)
T ss_pred EEEEEeCCCCeEEEEEECCCCCeEEC-c-cCCCCccceEECCCCCEEEEEECCCCCceEEEEECCCCCEEEEe-cCCC--
Confidence 5556666664 88889988765443 3 3555667889999999776654 456677777776554433332 2222
Q ss_pred CCeeEEEecCCCEEEEEEC-CCCEEEE
Q 003579 316 PPLCIRFYANGRHILSAGQ-DRAFRLF 341 (809)
Q Consensus 316 ~v~~i~~~~~~~~l~s~~~-dg~i~~w 341 (809)
......|+|||++|+..+. ++...+|
T Consensus 351 ~~~~~~~SpDG~~l~~~~~~~g~~~I~ 377 (448)
T PRK04792 351 QNLGGSITPDGRSMIMVNRTNGKFNIA 377 (448)
T ss_pred CCcCeeECCCCCEEEEEEecCCceEEE
Confidence 2345689999999887655 3434443
No 268
>PRK01029 tolB translocation protein TolB; Provisional
Probab=99.34 E-value=7.2e-10 Score=119.56 Aligned_cols=133 Identities=9% Similarity=-0.006 Sum_probs=91.1
Q ss_pred EEEEEEcCCCCEEEEEe-CcCeEEEE--ECCC-Cceeeeeec-CCCeEEEEEeeCCCEEEEEeCC---CeEEEEEcCCCe
Q 003579 477 VVGVACDSTNTLMISAG-YHGDIKVW--DFKG-RDLKSRWEV-GCSLVKIVYHRVNGLLATVADD---LVIRLFDVVALR 548 (809)
Q Consensus 477 v~~l~~~~~~~~l~s~~-~dg~i~iw--d~~~-~~~~~~~~~-~~~i~~~~~s~~~~~la~~~~d---~~I~v~d~~~~~ 548 (809)
....+|+|||+.|+..+ .+|...+| ++.. +.....+.. ...+....|+|||+.|+....+ ..|++||+.+++
T Consensus 283 ~~~p~wSPDG~~Laf~s~~~g~~~ly~~~~~~~g~~~~~lt~~~~~~~~p~wSPDG~~Laf~~~~~g~~~I~v~dl~~g~ 362 (428)
T PRK01029 283 QGNPSFSPDGTRLVFVSNKDGRPRIYIMQIDPEGQSPRLLTKKYRNSSCPAWSPDGKKIAFCSVIKGVRQICVYDLATGR 362 (428)
T ss_pred cCCeEECCCCCEEEEEECCCCCceEEEEECcccccceEEeccCCCCccceeECCCCCEEEEEEcCCCCcEEEEEECCCCC
Confidence 34568899988777655 45654444 4432 222233322 3466788999999999887653 479999999887
Q ss_pred EEEEEecCCCCeeeEEECCCCCEEEEEeC---CCeEEEEEcCCccEEEEeeeCcceEEEEEcCCC
Q 003579 549 MVRKFEGHTDRITDFCFSEDGKWLLSSGM---DGSLRIWDVILARQIDAIHVDVSITALSLSPNM 610 (809)
Q Consensus 549 ~~~~~~~h~~~I~~l~fspdg~~l~s~s~---D~~I~vwd~~~~~~i~~~~~~~~v~~l~~spdg 610 (809)
... +......+....|+|||++|+..+. ...|.+||+.+++..........+...+|+|-.
T Consensus 363 ~~~-Lt~~~~~~~~p~wSpDG~~L~f~~~~~g~~~L~~vdl~~g~~~~Lt~~~g~~~~p~Ws~~~ 426 (428)
T PRK01029 363 DYQ-LTTSPENKESPSWAIDSLHLVYSAGNSNESELYLISLITKKTRKIVIGSGEKRFPSWGAFP 426 (428)
T ss_pred eEE-ccCCCCCccceEECCCCCEEEEEECCCCCceEEEEECCCCCEEEeecCCCcccCceecCCC
Confidence 643 4333446778999999999885443 357899999988776655555557788888854
No 269
>KOG4547 consensus WD40 repeat-containing protein [General function prediction only]
Probab=99.32 E-value=2.5e-10 Score=117.70 Aligned_cols=190 Identities=14% Similarity=0.271 Sum_probs=158.0
Q ss_pred CCCCEEEEEeCCCcEEEEECCCCceeeeeeCcccccccCccccEEEEEE--------------------cCCCCEEEEEe
Q 003579 434 ACGNFAVLGTAGGWIERFNLQSGISRGSYLDMSERSNYAHNGEVVGVAC--------------------DSTNTLMISAG 493 (809)
Q Consensus 434 ~~g~~l~~g~~~g~i~i~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~--------------------~~~~~~l~s~~ 493 (809)
|-+.+++..+.||.+++|+...++....|.+... -.+..++..| +.+...++-|.
T Consensus 3 ~~~~~~A~~~~~g~l~iw~t~~~~~~~e~~p~~~-----~s~t~~~~~w~L~~~~s~~k~~~~~~~~~~s~~t~~lvlgt 77 (541)
T KOG4547|consen 3 PALDYFALSTGDGRLRIWDTAKNQLQQEFAPIAS-----LSGTCTYTKWGLSADYSPMKWLSLEKAKKASLDTSMLVLGT 77 (541)
T ss_pred chhheEeecCCCCeEEEEEccCceeeeeeccchh-----ccCcceeEEEEEEeccchHHHHhHHHHhhccCCceEEEeec
Confidence 4567899999999999999999999988864221 1222233332 11234677788
Q ss_pred CcCeEEEEECCCCceeeeeec---CCCeEEEEEeeCCCEEEEEeCCCeEEEEEcCCCeEEEEEecCCCCeeeEEECCCCC
Q 003579 494 YHGDIKVWDFKGRDLKSRWEV---GCSLVKIVYHRVNGLLATVADDLVIRLFDVVALRMVRKFEGHTDRITDFCFSEDGK 570 (809)
Q Consensus 494 ~dg~i~iwd~~~~~~~~~~~~---~~~i~~~~~s~~~~~la~~~~d~~I~v~d~~~~~~~~~~~~h~~~I~~l~fspdg~ 570 (809)
..|.|.+|+...++....+.. .+++.++.++.+-..+.+++.|+.+..|+...++.++.+++....+.+++.+|||+
T Consensus 78 ~~g~v~~ys~~~g~it~~~st~~h~~~v~~~~~~~~~~ciyS~~ad~~v~~~~~~~~~~~~~~~~~~~~~~sl~is~D~~ 157 (541)
T KOG4547|consen 78 PQGSVLLYSVAGGEITAKLSTDKHYGNVNEILDAQRLGCIYSVGADLKVVYILEKEKVIIRIWKEQKPLVSSLCISPDGK 157 (541)
T ss_pred CCccEEEEEecCCeEEEEEecCCCCCcceeeecccccCceEecCCceeEEEEecccceeeeeeccCCCccceEEEcCCCC
Confidence 899999999999999988863 38899999999999999999999999999999999999999999999999999999
Q ss_pred EEEEEeCCCeEEEEEcCCccEEEEeeeCcc-eEEEEEcCC-----CCeEEEEEeCCCeEEEeecCc
Q 003579 571 WLLSSGMDGSLRIWDVILARQIDAIHVDVS-ITALSLSPN-----MDVLATAHVDQNGVYLWVNRC 630 (809)
Q Consensus 571 ~l~s~s~D~~I~vwd~~~~~~i~~~~~~~~-v~~l~~spd-----g~~lat~~~d~~~i~lW~~~~ 630 (809)
.|++|+ +.|++||+.+++.+..|.+|.. |.+++|-.+ |.++.++..-..++.+|-...
T Consensus 158 ~l~~as--~~ik~~~~~~kevv~~ftgh~s~v~t~~f~~~~~g~~G~~vLssa~~~r~i~~w~v~~ 221 (541)
T KOG4547|consen 158 ILLTAS--RQIKVLDIETKEVVITFTGHGSPVRTLSFTTLIDGIIGKYVLSSAAAERGITVWVVEK 221 (541)
T ss_pred EEEecc--ceEEEEEccCceEEEEecCCCcceEEEEEEEeccccccceeeeccccccceeEEEEEc
Confidence 999997 7899999999999999998865 999999877 778777766555799997754
No 270
>TIGR03300 assembly_YfgL outer membrane assembly lipoprotein YfgL. Members of this protein family are YfgL, a lipoprotein component of a complex that acts protein insertion into the bacterial outer membrane. Other members of this complex are NlpB, YfiO, and YaeT. This protein contains multiple copies of a repeat that, in other contexts, are associated with binding of the coenzyme PQQ.
Probab=99.32 E-value=3.3e-09 Score=113.97 Aligned_cols=299 Identities=15% Similarity=0.185 Sum_probs=187.3
Q ss_pred EEEeCCEEEEEeCCCcEEEEEcCCCccccceeeeEEcCCccccEEEEeCCCCCCEEEEEeCCCeEEEEeCCCCceEEEEc
Q 003579 99 LLLFGEHILSIDIDGNMFIWAFKGIEENLAPVGHVKLDDKFTPTCIMHPDTYLNKVIVGSQEGSLQLWNISTKKKLYEFK 178 (809)
Q Consensus 99 l~~~g~~l~s~~~dg~i~vWd~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~l~~~~~dg~i~lwd~~~~~~~~~~~ 178 (809)
....++.++.++.+|.|..+|..+++. +-+...........+. ++ +.+++++.+|.+..+|..+|+.+....
T Consensus 61 p~v~~~~v~v~~~~g~v~a~d~~tG~~----~W~~~~~~~~~~~p~v--~~--~~v~v~~~~g~l~ald~~tG~~~W~~~ 132 (377)
T TIGR03300 61 PAVAGGKVYAADADGTVVALDAETGKR----LWRVDLDERLSGGVGA--DG--GLVFVGTEKGEVIALDAEDGKELWRAK 132 (377)
T ss_pred eEEECCEEEEECCCCeEEEEEccCCcE----eeeecCCCCcccceEE--cC--CEEEEEcCCCEEEEEECCCCcEeeeec
Confidence 345688999999899999999998887 3333333332222222 33 679999999999999999999998776
Q ss_pred CCCCCEEE-EEEcCCCCEEEEEeCCCeEEEEEeeCCeEEEEEeccCCCcE-----EEEEEecCCCCEEEEEcCCCcEEEE
Q 003579 179 GWGSSISS-CVSSPALDVVAVGCSDGKIHVHNVRYDEELVTFTHSMRGAV-----TALAFSSDGQPLLASGASSGVISIW 252 (809)
Q Consensus 179 ~~~~~I~~-l~~sp~~~~la~g~~dg~i~iwd~~~~~~~~~~~~~~~~~V-----~~l~fs~dg~~~lasg~~dg~I~iw 252 (809)
... .+.+ ... .++.+++++.+|.+..||.++|+.+-++.... ..+ .+.... ++ .++.+..+|.+..+
T Consensus 133 ~~~-~~~~~p~v--~~~~v~v~~~~g~l~a~d~~tG~~~W~~~~~~-~~~~~~~~~sp~~~-~~--~v~~~~~~g~v~al 205 (377)
T TIGR03300 133 LSS-EVLSPPLV--ANGLVVVRTNDGRLTALDAATGERLWTYSRVT-PALTLRGSASPVIA-DG--GVLVGFAGGKLVAL 205 (377)
T ss_pred cCc-eeecCCEE--ECCEEEEECCCCeEEEEEcCCCceeeEEccCC-CceeecCCCCCEEE-CC--EEEEECCCCEEEEE
Confidence 432 2221 111 34578888889999999999999887776531 111 111222 33 56778888999999
Q ss_pred ECCCceeeeeeeccccc---c------e-EEEEEecCCCEEEEEcCCCcEEEEEeeCCCCCceeEEeccCCCCCCeeEEE
Q 003579 253 NLEKRRLQSVIREAHDN---A------I-ISLHFFANEPVLMSASADNSIKMWIFDTTDGDPRLLRFRSGHSAPPLCIRF 322 (809)
Q Consensus 253 dl~~~~~~~~~~~~h~~---~------V-~~l~~~~~~~~l~s~s~d~~i~vw~~~~~~~~~~~~~~~~~h~~~v~~i~~ 322 (809)
|+++|+.+......... . + ....+ .+..++.++.+|.+..||..+.. .+-... .. ......
T Consensus 206 d~~tG~~~W~~~~~~~~g~~~~~~~~~~~~~p~~--~~~~vy~~~~~g~l~a~d~~tG~----~~W~~~-~~-~~~~p~- 276 (377)
T TIGR03300 206 DLQTGQPLWEQRVALPKGRTELERLVDVDGDPVV--DGGQVYAVSYQGRVAALDLRSGR----VLWKRD-AS-SYQGPA- 276 (377)
T ss_pred EccCCCEeeeeccccCCCCCchhhhhccCCccEE--ECCEEEEEEcCCEEEEEECCCCc----EEEeec-cC-CccCce-
Confidence 99999876654311110 0 1 11111 24477778889999999876542 221111 11 111112
Q ss_pred ecCCCEEEEEECCCCEEEEEeeecccceecchhhHHHHHhhccchhhhhccCceeEEeeccccccccceeEEeecCCceE
Q 003579 323 YANGRHILSAGQDRAFRLFSVIQDQQSRELSQRHVAKRARKLKMKEEELKLKPVIAFDCAEIRERDWCNVVTCHMDTAQA 402 (809)
Q Consensus 323 ~~~~~~l~s~~~dg~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~ 402 (809)
..+..++.++.||.+..+|..+++...+.
T Consensus 277 -~~~~~vyv~~~~G~l~~~d~~tG~~~W~~-------------------------------------------------- 305 (377)
T TIGR03300 277 -VDDNRLYVTDADGVVVALDRRSGSELWKN-------------------------------------------------- 305 (377)
T ss_pred -EeCCEEEEECCCCeEEEEECCCCcEEEcc--------------------------------------------------
Confidence 24567888889999999998665432211
Q ss_pred EEEEeeeeeecceeeecCCCCCCCeEEEEEcCCCCEEEEEeCCCcEEEEECCCCceeeeeeCcccccccCccccEE-EEE
Q 003579 403 YVWRLQNFVLGEHILRPCPENPTAVKACTISACGNFAVLGTAGGWIERFNLQSGISRGSYLDMSERSNYAHNGEVV-GVA 481 (809)
Q Consensus 403 ~~w~~~~~~~~~~~~~~~~~~~~~v~~v~~s~~g~~l~~g~~~g~i~i~~~~~~~~~~~~~~~~~~~~~~h~~~v~-~l~ 481 (809)
... .. ....+..+ .++.+++++.+|.++++|..+|+.+..+. .+...+. ..+
T Consensus 306 -----~~~----------~~--~~~ssp~i--~g~~l~~~~~~G~l~~~d~~tG~~~~~~~--------~~~~~~~~sp~ 358 (377)
T TIGR03300 306 -----DEL----------KY--RQLTAPAV--VGGYLVVGDFEGYLHWLSREDGSFVARLK--------TDGSGIASPPV 358 (377)
T ss_pred -----ccc----------cC--CccccCEE--ECCEEEEEeCCCEEEEEECCCCCEEEEEE--------cCCCccccCCE
Confidence 000 00 01111111 36789999999999999999999988775 3332222 222
Q ss_pred EcCCCCEEEEEeCcCeEEEE
Q 003579 482 CDSTNTLMISAGYHGDIKVW 501 (809)
Q Consensus 482 ~~~~~~~l~s~~~dg~i~iw 501 (809)
+. + ..|+.++.||.|..+
T Consensus 359 ~~-~-~~l~v~~~dG~l~~~ 376 (377)
T TIGR03300 359 VV-G-DGLLVQTRDGDLYAF 376 (377)
T ss_pred EE-C-CEEEEEeCCceEEEe
Confidence 32 3 358888899988765
No 271
>PRK00178 tolB translocation protein TolB; Provisional
Probab=99.29 E-value=1.2e-09 Score=119.64 Aligned_cols=171 Identities=15% Similarity=0.021 Sum_probs=113.3
Q ss_pred CeEEEEEcCCCCEEEEE-eCCC--cEEEEECCCCceeeeeeCcccccccCccccEEEEEEcCCCCEEEEEeC-cC--eEE
Q 003579 426 AVKACTISACGNFAVLG-TAGG--WIERFNLQSGISRGSYLDMSERSNYAHNGEVVGVACDSTNTLMISAGY-HG--DIK 499 (809)
Q Consensus 426 ~v~~v~~s~~g~~l~~g-~~~g--~i~i~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~l~s~~~-dg--~i~ 499 (809)
......|+|+|+.++.. ..+| .|+++|+.++.... +. .+........|+|+++.++..+. +| .|.
T Consensus 244 ~~~~~~~SpDG~~la~~~~~~g~~~Iy~~d~~~~~~~~-lt--------~~~~~~~~~~~spDg~~i~f~s~~~g~~~iy 314 (430)
T PRK00178 244 LNGAPAWSPDGSKLAFVLSKDGNPEIYVMDLASRQLSR-VT--------NHPAIDTEPFWGKDGRTLYFTSDRGGKPQIY 314 (430)
T ss_pred CcCCeEECCCCCEEEEEEccCCCceEEEEECCCCCeEE-cc--------cCCCCcCCeEECCCCCEEEEEECCCCCceEE
Confidence 34467899999988754 3444 68888998876543 21 34445667889999998776653 33 577
Q ss_pred EEECCCCceeeeeecCCCeEEEEEeeCCCEEEEEeCCC---eEEEEEcCCCeEEEEEecCCCCeeeEEECCCCCEEEEEe
Q 003579 500 VWDFKGRDLKSRWEVGCSLVKIVYHRVNGLLATVADDL---VIRLFDVVALRMVRKFEGHTDRITDFCFSEDGKWLLSSG 576 (809)
Q Consensus 500 iwd~~~~~~~~~~~~~~~i~~~~~s~~~~~la~~~~d~---~I~v~d~~~~~~~~~~~~h~~~I~~l~fspdg~~l~s~s 576 (809)
++++.+++...............|+|+|+.++....++ .|.++|+.+++.. .+. +........|+|||++|+.++
T Consensus 315 ~~d~~~g~~~~lt~~~~~~~~~~~Spdg~~i~~~~~~~~~~~l~~~dl~tg~~~-~lt-~~~~~~~p~~spdg~~i~~~~ 392 (430)
T PRK00178 315 KVNVNGGRAERVTFVGNYNARPRLSADGKTLVMVHRQDGNFHVAAQDLQRGSVR-ILT-DTSLDESPSVAPNGTMLIYAT 392 (430)
T ss_pred EEECCCCCEEEeecCCCCccceEECCCCCEEEEEEccCCceEEEEEECCCCCEE-Ecc-CCCCCCCceECCCCCEEEEEE
Confidence 78888777544332223345678999999998876532 5889999887643 332 222334568999999998776
Q ss_pred CC---CeEEEEEcCCccEEEEeeeC-cceEEEEEcC
Q 003579 577 MD---GSLRIWDVILARQIDAIHVD-VSITALSLSP 608 (809)
Q Consensus 577 ~D---~~I~vwd~~~~~~i~~~~~~-~~v~~l~~sp 608 (809)
.+ ..|.++++. |.....+..+ ..+...+|||
T Consensus 393 ~~~g~~~l~~~~~~-g~~~~~l~~~~g~~~~p~ws~ 427 (430)
T PRK00178 393 RQQGRGVLMLVSIN-GRVRLPLPTAQGEVREPSWSP 427 (430)
T ss_pred ecCCceEEEEEECC-CCceEECcCCCCCcCCCccCC
Confidence 44 347777775 4444444333 3467777776
No 272
>PRK00178 tolB translocation protein TolB; Provisional
Probab=99.29 E-value=9.8e-10 Score=120.22 Aligned_cols=194 Identities=18% Similarity=0.041 Sum_probs=133.4
Q ss_pred CCCeEEEEEcCCCCEEEEEeCC---CcEEEEECCCCceeeeeeCcccccccCccccEEEEEEcCCCCEEE-EEeCcC--e
Q 003579 424 PTAVKACTISACGNFAVLGTAG---GWIERFNLQSGISRGSYLDMSERSNYAHNGEVVGVACDSTNTLMI-SAGYHG--D 497 (809)
Q Consensus 424 ~~~v~~v~~s~~g~~l~~g~~~---g~i~i~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~l~-s~~~dg--~ 497 (809)
...+....|+|||+.++..+.+ ..|.+|++.++...... ...+.+...+|+|+|+.++ +...+| .
T Consensus 198 ~~~~~~p~wSpDG~~la~~s~~~~~~~l~~~~l~~g~~~~l~---------~~~g~~~~~~~SpDG~~la~~~~~~g~~~ 268 (430)
T PRK00178 198 REPILSPRWSPDGKRIAYVSFEQKRPRIFVQNLDTGRREQIT---------NFEGLNGAPAWSPDGSKLAFVLSKDGNPE 268 (430)
T ss_pred CCceeeeeECCCCCEEEEEEcCCCCCEEEEEECCCCCEEEcc---------CCCCCcCCeEECCCCCEEEEEEccCCCce
Confidence 3568899999999998776543 36899999888654422 2233455789999998877 444455 6
Q ss_pred EEEEECCCCceeeeeecCCCeEEEEEeeCCCEEEEEeCC---CeEEEEEcCCCeEEEEEecCCCCeeeEEECCCCCEEEE
Q 003579 498 IKVWDFKGRDLKSRWEVGCSLVKIVYHRVNGLLATVADD---LVIRLFDVVALRMVRKFEGHTDRITDFCFSEDGKWLLS 574 (809)
Q Consensus 498 i~iwd~~~~~~~~~~~~~~~i~~~~~s~~~~~la~~~~d---~~I~v~d~~~~~~~~~~~~h~~~I~~l~fspdg~~l~s 574 (809)
|++||+.+++...............|+|||+.++..+.. ..|+++|+.+++..+.. ..........|+|||++|+.
T Consensus 269 Iy~~d~~~~~~~~lt~~~~~~~~~~~spDg~~i~f~s~~~g~~~iy~~d~~~g~~~~lt-~~~~~~~~~~~Spdg~~i~~ 347 (430)
T PRK00178 269 IYVMDLASRQLSRVTNHPAIDTEPFWGKDGRTLYFTSDRGGKPQIYKVNVNGGRAERVT-FVGNYNARPRLSADGKTLVM 347 (430)
T ss_pred EEEEECCCCCeEEcccCCCCcCCeEECCCCCEEEEEECCCCCceEEEEECCCCCEEEee-cCCCCccceEECCCCCEEEE
Confidence 888899988765544444556678899999988777642 36888888887654322 22233446789999999987
Q ss_pred EeCC-C--eEEEEEcCCccEEEEeeeCcceEEEEEcCCCCeEEEEEeCCCe--EEEeec
Q 003579 575 SGMD-G--SLRIWDVILARQIDAIHVDVSITALSLSPNMDVLATAHVDQNG--VYLWVN 628 (809)
Q Consensus 575 ~s~D-~--~I~vwd~~~~~~i~~~~~~~~v~~l~~spdg~~lat~~~d~~~--i~lW~~ 628 (809)
.+.+ + .|.+||+.+++... +..........|+|||++|+.+..+++. |++++.
T Consensus 348 ~~~~~~~~~l~~~dl~tg~~~~-lt~~~~~~~p~~spdg~~i~~~~~~~g~~~l~~~~~ 405 (430)
T PRK00178 348 VHRQDGNFHVAAQDLQRGSVRI-LTDTSLDESPSVAPNGTMLIYATRQQGRGVLMLVSI 405 (430)
T ss_pred EEccCCceEEEEEECCCCCEEE-ccCCCCCCCceECCCCCEEEEEEecCCceEEEEEEC
Confidence 7643 3 58899999886533 2222233467899999999888766433 444443
No 273
>COG4946 Uncharacterized protein related to the periplasmic component of the Tol biopolymer transport system [Function unknown]
Probab=99.28 E-value=2.4e-08 Score=100.05 Aligned_cols=290 Identities=16% Similarity=0.160 Sum_probs=186.7
Q ss_pred eCCEEEEEeCCCcEEEEEcCCCccccceeeeEEcCCccccEEEEeCCCCCCEEEEEeCCC-eEEEEeCCCCceEEEEcCC
Q 003579 102 FGEHILSIDIDGNMFIWAFKGIEENLAPVGHVKLDDKFTPTCIMHPDTYLNKVIVGSQEG-SLQLWNISTKKKLYEFKGW 180 (809)
Q Consensus 102 ~g~~l~s~~~dg~i~vWd~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~l~~~~~dg-~i~lwd~~~~~~~~~~~~~ 180 (809)
+|++++.+| -|...|.+...+-. -.+. +...+.-.-+.-++ +.++.|..|| .+-++|..+++... +...
T Consensus 331 ~Gd~ia~VS-RGkaFi~~~~~~~~-----iqv~-~~~~VrY~r~~~~~--e~~vigt~dgD~l~iyd~~~~e~kr-~e~~ 400 (668)
T COG4946 331 NGDYIALVS-RGKAFIMRPWDGYS-----IQVG-KKGGVRYRRIQVDP--EGDVIGTNDGDKLGIYDKDGGEVKR-IEKD 400 (668)
T ss_pred CCcEEEEEe-cCcEEEECCCCCee-----EEcC-CCCceEEEEEccCC--cceEEeccCCceEEEEecCCceEEE-eeCC
Confidence 599999998 56666665544332 1111 12223333344455 6799999999 89999988776554 4455
Q ss_pred CCCEEEEEEcCCCCEEEEEeCCCeEEEEEeeCCeEEEEEeccCCCcEEEEEEecCCCCEEEEEcCCC----cEEEEECCC
Q 003579 181 GSSISSCVSSPALDVVAVGCSDGKIHVHNVRYDEELVTFTHSMRGAVTALAFSSDGQPLLASGASSG----VISIWNLEK 256 (809)
Q Consensus 181 ~~~I~~l~~sp~~~~la~g~~dg~i~iwd~~~~~~~~~~~~~~~~~V~~l~fs~dg~~~lasg~~dg----~I~iwdl~~ 256 (809)
-+.|.++..+|+|++++++.....+.+.|+.+|.....-+. ..+-|+...|+|+++ ++|-+-.+| .|+++|+.+
T Consensus 401 lg~I~av~vs~dGK~~vvaNdr~el~vididngnv~~idkS-~~~lItdf~~~~nsr-~iAYafP~gy~tq~Iklydm~~ 478 (668)
T COG4946 401 LGNIEAVKVSPDGKKVVVANDRFELWVIDIDNGNVRLIDKS-EYGLITDFDWHPNSR-WIAYAFPEGYYTQSIKLYDMDG 478 (668)
T ss_pred ccceEEEEEcCCCcEEEEEcCceEEEEEEecCCCeeEeccc-ccceeEEEEEcCCce-eEEEecCcceeeeeEEEEecCC
Confidence 78899999999999999999999999999999886554433 368899999999999 888776554 799999999
Q ss_pred ceeeeeeecccccceEEEEEecCCCEEEEEcC-------CCcEEEEEeeCCCCCceeEEeccCCCCCCeeE---------
Q 003579 257 RRLQSVIREAHDNAIISLHFFANEPVLMSASA-------DNSIKMWIFDTTDGDPRLLRFRSGHSAPPLCI--------- 320 (809)
Q Consensus 257 ~~~~~~~~~~h~~~V~~l~~~~~~~~l~s~s~-------d~~i~vw~~~~~~~~~~~~~~~~~h~~~v~~i--------- 320 (809)
++...... ..+.=.+-+|.|++++|.--+. |..+.=+.+..-. .+-++....+...|....
T Consensus 479 ~Kiy~vTT--~ta~DfsPaFD~d~ryLYfLs~RsLdPs~Drv~fnf~f~~vs-kPylv~L~~g~~sP~~q~p~~~~~ea~ 555 (668)
T COG4946 479 GKIYDVTT--PTAYDFSPAFDPDGRYLYFLSARSLDPSNDRVIFNFSFQRVS-KPYLVVLGRGYYSPFNQPPDEANSEAG 555 (668)
T ss_pred CeEEEecC--CcccccCcccCCCCcEEEEEeccccCCCCCeeEEEEEEeeec-cceEEEecCCCCChhhcCchhcCcccc
Confidence 88766554 3333456788899997766542 3333323222211 111111111221111100
Q ss_pred -----------EEec--CCCE-EEEEECCCCEEEEEeeecccceecchhhHHHHHhhccchhhhhccCceeEEeeccccc
Q 003579 321 -----------RFYA--NGRH-ILSAGQDRAFRLFSVIQDQQSRELSQRHVAKRARKLKMKEEELKLKPVIAFDCAEIRE 386 (809)
Q Consensus 321 -----------~~~~--~~~~-l~s~~~dg~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~ 386 (809)
.-.| .+.+ -+++-.+|.|.+++..-....
T Consensus 556 e~dle~ie~r~eP~pVee~dY~sI~~lk~~killfs~pi~Gef------------------------------------- 598 (668)
T COG4946 556 EVDLEGIEDRVEPFPVEEGDYRSIAGLKNGKILLFSYPIHGEF------------------------------------- 598 (668)
T ss_pred ceehhhhcccccccccCccceeEeeecCCCeEEEEEeeccchh-------------------------------------
Confidence 0011 2222 334445565666665322211
Q ss_pred cccceeEEeecCCceEEEEEeeeeeecceeeecCCCCCCCeEEEEEcCCCCEEEEEeCCCcEEEEECCC
Q 003579 387 RDWCNVVTCHMDTAQAYVWRLQNFVLGEHILRPCPENPTAVKACTISACGNFAVLGTAGGWIERFNLQS 455 (809)
Q Consensus 387 ~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~v~~v~~s~~g~~l~~g~~~g~i~i~~~~~ 455 (809)
.....+....+.+..++++++...+. ...++++.+|+||..+.+ -.+|.++++++..
T Consensus 599 ---s~yy~gq~~kG~l~~ydletkk~~e~--------k~nvss~rlS~D~s~ilv-k~d~kl~~f~vek 655 (668)
T COG4946 599 ---SQYYWGQPEKGRLEKYDLETKKVEEY--------KDNVSSFRLSSDGSKILV-KLDGKLRLFDVEK 655 (668)
T ss_pred ---hhhhcCCCccceEEEEecchhhHHHH--------hcccceEEEcCCCCEEEE-EeCCeEEEEeccc
Confidence 11222344567778888887655332 278899999999999999 8899999999875
No 274
>KOG0280 consensus Uncharacterized conserved protein [Amino acid transport and metabolism]
Probab=99.26 E-value=1.5e-09 Score=102.21 Aligned_cols=271 Identities=14% Similarity=0.156 Sum_probs=181.7
Q ss_pred CCeEEEEEeeCCeEEE--EEeccCCCcEEEEEEec---CCCCEEEEEcCCCcEEEEECCCceeeeeeeccc-----ccce
Q 003579 202 DGKIHVHNVRYDEELV--TFTHSMRGAVTALAFSS---DGQPLLASGASSGVISIWNLEKRRLQSVIREAH-----DNAI 271 (809)
Q Consensus 202 dg~i~iwd~~~~~~~~--~~~~~~~~~V~~l~fs~---dg~~~lasg~~dg~I~iwdl~~~~~~~~~~~~h-----~~~V 271 (809)
.|.+.+|++...+.+. ++.......+..+.|+- +|...++-+...|.|.++..........++.-. ....
T Consensus 45 ~Gkl~Lys~~d~~~~~l~~~q~~dts~~~dm~w~~~~~~g~~~l~~a~a~G~i~~~r~~~~~ss~~L~~ls~~ki~~~~~ 124 (339)
T KOG0280|consen 45 SGKLHLYSLEDMKLSPLDTLQCTDTSTEFDMLWRIRETDGDFNLLDAHARGQIQLYRNDEDESSVHLRGLSSKKISVVEA 124 (339)
T ss_pred ccceEEEeecccccCccceeeeecccccceeeeeeccCCccceeeeccccceEEEEeeccceeeeeecccchhhhhheee
Confidence 4678899987665433 33322245677777763 444466777788999999876654444444111 1124
Q ss_pred EEEEEecCCCEEEEEcCCCcEEEEEeeCCCCCceeEEeccCCCCCCeeEEEec-CCCEEEEEECCCCEEEEEeeecccce
Q 003579 272 ISLHFFANEPVLMSASADNSIKMWIFDTTDGDPRLLRFRSGHSAPPLCIRFYA-NGRHILSAGQDRAFRLFSVIQDQQSR 350 (809)
Q Consensus 272 ~~l~~~~~~~~l~s~s~d~~i~vw~~~~~~~~~~~~~~~~~h~~~v~~i~~~~-~~~~l~s~~~dg~i~~wd~~~~~~~~ 350 (809)
.++.|++.+..++++-.+|.+.+-+.... ..+..+..++|..+.....|+. +.+.+.+||.|+.+..||++.+..
T Consensus 125 lslD~~~~~~~i~vs~s~G~~~~v~~t~~--~le~vq~wk~He~E~Wta~f~~~~pnlvytGgDD~~l~~~D~R~p~~-- 200 (339)
T KOG0280|consen 125 LSLDISTSGTKIFVSDSRGSISGVYETEM--VLEKVQTWKVHEFEAWTAKFSDKEPNLVYTGGDDGSLSCWDIRIPKT-- 200 (339)
T ss_pred eEEEeeccCceEEEEcCCCcEEEEeccee--eeeecccccccceeeeeeecccCCCceEEecCCCceEEEEEecCCcc--
Confidence 57889999999999999999885433322 1222347789999999999987 556888999999999999863210
Q ss_pred ecchhhHHHHHhhccchhhhhccCceeEEeeccccccccceeEEeecCCceEEEEEeeeeeecceeeecCCCCCCCeEEE
Q 003579 351 ELSQRHVAKRARKLKMKEEELKLKPVIAFDCAEIRERDWCNVVTCHMDTAQAYVWRLQNFVLGEHILRPCPENPTAVKAC 430 (809)
Q Consensus 351 ~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~v~~v 430 (809)
T Consensus 201 -------------------------------------------------------------------------------- 200 (339)
T KOG0280|consen 201 -------------------------------------------------------------------------------- 200 (339)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred EEcCCCCEEEEEeCCCcEEEEECCCCceeeeeeCcccccccCccccEEEEEEcC-CCCEEEEEeCcCeEEEEECC-CCce
Q 003579 431 TISACGNFAVLGTAGGWIERFNLQSGISRGSYLDMSERSNYAHNGEVVGVACDS-TNTLMISAGYHGDIKVWDFK-GRDL 508 (809)
Q Consensus 431 ~~s~~g~~l~~g~~~g~i~i~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~-~~~~l~s~~~dg~i~iwd~~-~~~~ 508 (809)
+ +|.- ..-|...|.++.-+| ...++++|+.|..|++||.+ -+++
T Consensus 201 -------~-----------i~~n----------------~kvH~~GV~SI~ss~~~~~~I~TGsYDe~i~~~DtRnm~kP 246 (339)
T KOG0280|consen 201 -------F-----------IWHN----------------SKVHTSGVVSIYSSPPKPTYIATGSYDECIRVLDTRNMGKP 246 (339)
T ss_pred -------e-----------eeec----------------ceeeecceEEEecCCCCCceEEEeccccceeeeehhcccCc
Confidence 0 0000 025777888888775 56799999999999999998 5788
Q ss_pred eeeeecCCCeEEEEEeeCCC-EEEEEeCCCeEEEEEcCCC--e---EEEEEecCCCCeeeEEECCCCCEEEEEe-CCCeE
Q 003579 509 KSRWEVGCSLVKIVYHRVNG-LLATVADDLVIRLFDVVAL--R---MVRKFEGHTDRITDFCFSEDGKWLLSSG-MDGSL 581 (809)
Q Consensus 509 ~~~~~~~~~i~~~~~s~~~~-~la~~~~d~~I~v~d~~~~--~---~~~~~~~h~~~I~~l~fspdg~~l~s~s-~D~~I 581 (809)
+..-...+.|+.+..+|.-. .+.+++.-.-.+|.++..+ + .....+.|.+-+..-.|.....+|+|++ .|+.+
T Consensus 247 l~~~~v~GGVWRi~~~p~~~~~lL~~CMh~G~ki~~~~~~~~e~~~~~~s~~~hdSl~YG~DWd~~~~~lATCsFYDk~~ 326 (339)
T KOG0280|consen 247 LFKAKVGGGVWRIKHHPEIFHRLLAACMHNGAKILDSSDKVLEFQIVLPSDKIHDSLCYGGDWDSKDSFLATCSFYDKKI 326 (339)
T ss_pred cccCccccceEEEEecchhhhHHHHHHHhcCceEEEecccccchheeeeccccccceeeccccccccceeeeeeccccce
Confidence 87777889999999999433 3333333344566666543 2 3445566776666666744445788876 67775
Q ss_pred E-EEEcCCcc
Q 003579 582 R-IWDVILAR 590 (809)
Q Consensus 582 ~-vwd~~~~~ 590 (809)
+ +|-.-++.
T Consensus 327 ~~~Wl~~t~~ 336 (339)
T KOG0280|consen 327 RQLWLHITGE 336 (339)
T ss_pred eeeeeeccCC
Confidence 5 77655443
No 275
>PRK01029 tolB translocation protein TolB; Provisional
Probab=99.25 E-value=2.1e-09 Score=116.03 Aligned_cols=196 Identities=13% Similarity=0.036 Sum_probs=130.7
Q ss_pred CCeEEEEEcCCCCE---EEEEeCCC--cEEEEECCCCceeeeeeCcccccccCccccEEEEEEcCCCCEEEEEeC-cC--
Q 003579 425 TAVKACTISACGNF---AVLGTAGG--WIERFNLQSGISRGSYLDMSERSNYAHNGEVVGVACDSTNTLMISAGY-HG-- 496 (809)
Q Consensus 425 ~~v~~v~~s~~g~~---l~~g~~~g--~i~i~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~l~s~~~-dg-- 496 (809)
....+-.|||||+. +++...+| .|++.++.+|...... ...+.....+|+|||+.|+..+. +|
T Consensus 185 ~~~~sP~wSPDG~~~~~~y~S~~~g~~~I~~~~l~~g~~~~lt---------~~~g~~~~p~wSPDG~~Laf~s~~~g~~ 255 (428)
T PRK01029 185 SLSITPTWMHIGSGFPYLYVSYKLGVPKIFLGSLENPAGKKIL---------ALQGNQLMPTFSPRKKLLAFISDRYGNP 255 (428)
T ss_pred CCcccceEccCCCceEEEEEEccCCCceEEEEECCCCCceEee---------cCCCCccceEECCCCCEEEEEECCCCCc
Confidence 45567799999974 33555554 6888888887654432 23444567899999988886653 22
Q ss_pred --eEEEEECCCC---ceeeeeecC-CCeEEEEEeeCCCEEEEEeC-CCe--EEEEEcCC-CeEEEEEecCCCCeeeEEEC
Q 003579 497 --DIKVWDFKGR---DLKSRWEVG-CSLVKIVYHRVNGLLATVAD-DLV--IRLFDVVA-LRMVRKFEGHTDRITDFCFS 566 (809)
Q Consensus 497 --~i~iwd~~~~---~~~~~~~~~-~~i~~~~~s~~~~~la~~~~-d~~--I~v~d~~~-~~~~~~~~~h~~~I~~l~fs 566 (809)
.+..|++..+ +........ ......+|+|||+.|+..++ ++. |+++++.. +...+.+..+...+....||
T Consensus 256 di~~~~~~~~~g~~g~~~~lt~~~~~~~~~p~wSPDG~~Laf~s~~~g~~~ly~~~~~~~g~~~~~lt~~~~~~~~p~wS 335 (428)
T PRK01029 256 DLFIQSFSLETGAIGKPRRLLNEAFGTQGNPSFSPDGTRLVFVSNKDGRPRIYIMQIDPEGQSPRLLTKKYRNSSCPAWS 335 (428)
T ss_pred ceeEEEeecccCCCCcceEeecCCCCCcCCeEECCCCCEEEEEECCCCCceEEEEECcccccceEEeccCCCCccceeEC
Confidence 3444776653 333333222 34467899999998887764 554 55555542 23345555556677889999
Q ss_pred CCCCEEEEEeCC---CeEEEEEcCCccEEEEeeeCcceEEEEEcCCCCeEEEEEeCC--CeEEEeecC
Q 003579 567 EDGKWLLSSGMD---GSLRIWDVILARQIDAIHVDVSITALSLSPNMDVLATAHVDQ--NGVYLWVNR 629 (809)
Q Consensus 567 pdg~~l~s~s~D---~~I~vwd~~~~~~i~~~~~~~~v~~l~~spdg~~lat~~~d~--~~i~lW~~~ 629 (809)
|||++|+..+.+ ..|.+||+.+++..........+.+..|+|||++|+....++ ..|++|++.
T Consensus 336 PDG~~Laf~~~~~g~~~I~v~dl~~g~~~~Lt~~~~~~~~p~wSpDG~~L~f~~~~~g~~~L~~vdl~ 403 (428)
T PRK01029 336 PDGKKIAFCSVIKGVRQICVYDLATGRDYQLTTSPENKESPSWAIDSLHLVYSAGNSNESELYLISLI 403 (428)
T ss_pred CCCCEEEEEEcCCCCcEEEEEECCCCCeEEccCCCCCccceEECCCCCEEEEEECCCCCceEEEEECC
Confidence 999999876643 469999999987755444434578899999999988665432 247777764
No 276
>PRK04792 tolB translocation protein TolB; Provisional
Probab=99.25 E-value=1.9e-09 Score=117.28 Aligned_cols=194 Identities=11% Similarity=0.014 Sum_probs=130.6
Q ss_pred CCCeEEEEEcCCCCEEEEEeCC-C--cEEEEECCCCceeeeeeCcccccccCccccEEEEEEcCCCCEEEE-EeCcCe--
Q 003579 424 PTAVKACTISACGNFAVLGTAG-G--WIERFNLQSGISRGSYLDMSERSNYAHNGEVVGVACDSTNTLMIS-AGYHGD-- 497 (809)
Q Consensus 424 ~~~v~~v~~s~~g~~l~~g~~~-g--~i~i~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~l~s-~~~dg~-- 497 (809)
...+.+..|||||+.++..+.+ + .|+++|+.++...... ...+.....+|+|+|+.|+. .+.+|.
T Consensus 217 ~~~~~~p~wSPDG~~La~~s~~~g~~~L~~~dl~tg~~~~lt---------~~~g~~~~~~wSPDG~~La~~~~~~g~~~ 287 (448)
T PRK04792 217 PEPLMSPAWSPDGRKLAYVSFENRKAEIFVQDIYTQVREKVT---------SFPGINGAPRFSPDGKKLALVLSKDGQPE 287 (448)
T ss_pred CCcccCceECCCCCEEEEEEecCCCcEEEEEECCCCCeEEec---------CCCCCcCCeeECCCCCEEEEEEeCCCCeE
Confidence 3577889999999998876543 3 6889999887653321 11223346899999997765 455664
Q ss_pred EEEEECCCCceeeeeecCCCeEEEEEeeCCCEEEEEeC-C--CeEEEEEcCCCeEEEEEecCCCCeeeEEECCCCCEEEE
Q 003579 498 IKVWDFKGRDLKSRWEVGCSLVKIVYHRVNGLLATVAD-D--LVIRLFDVVALRMVRKFEGHTDRITDFCFSEDGKWLLS 574 (809)
Q Consensus 498 i~iwd~~~~~~~~~~~~~~~i~~~~~s~~~~~la~~~~-d--~~I~v~d~~~~~~~~~~~~h~~~I~~l~fspdg~~l~s 574 (809)
|+++|+.+++..............+|+|||+.++..+. + ..|+++|+.+++..+. ..+.......+|+|||++|+.
T Consensus 288 Iy~~dl~tg~~~~lt~~~~~~~~p~wSpDG~~I~f~s~~~g~~~Iy~~dl~~g~~~~L-t~~g~~~~~~~~SpDG~~l~~ 366 (448)
T PRK04792 288 IYVVDIATKALTRITRHRAIDTEPSWHPDGKSLIFTSERGGKPQIYRVNLASGKVSRL-TFEGEQNLGGSITPDGRSMIM 366 (448)
T ss_pred EEEEECCCCCeEECccCCCCccceEECCCCCEEEEEECCCCCceEEEEECCCCCEEEE-ecCCCCCcCeeECCCCCEEEE
Confidence 88889888876554444455677899999998887664 2 3677788887765432 222223446799999999987
Q ss_pred EeCC-C--eEEEEEcCCccEEEEeeeCcceEEEEEcCCCCeEEEEEeCCCe--EEEeec
Q 003579 575 SGMD-G--SLRIWDVILARQIDAIHVDVSITALSLSPNMDVLATAHVDQNG--VYLWVN 628 (809)
Q Consensus 575 ~s~D-~--~I~vwd~~~~~~i~~~~~~~~v~~l~~spdg~~lat~~~d~~~--i~lW~~ 628 (809)
.+.+ + .|.++|+.+++... +.......+..|+|||++|+.+..++.. +++++.
T Consensus 367 ~~~~~g~~~I~~~dl~~g~~~~-lt~~~~d~~ps~spdG~~I~~~~~~~g~~~l~~~~~ 424 (448)
T PRK04792 367 VNRTNGKFNIARQDLETGAMQV-LTSTRLDESPSVAPNGTMVIYSTTYQGKQVLAAVSI 424 (448)
T ss_pred EEecCCceEEEEEECCCCCeEE-ccCCCCCCCceECCCCCEEEEEEecCCceEEEEEEC
Confidence 6643 3 46667888876533 2222223356899999999887766533 444443
No 277
>KOG0309 consensus Conserved WD40 repeat-containing protein [Function unknown]
Probab=99.21 E-value=1.6e-10 Score=121.12 Aligned_cols=287 Identities=16% Similarity=0.265 Sum_probs=188.9
Q ss_pred CCCEEEEEEcCCCCEEEEEeCCCeEEEEEeeC-CeEEEEEeccCCCcEEEEEEecCCC-CEEEEEcCCCcEEEEECCCc-
Q 003579 181 GSSISSCVSSPALDVVAVGCSDGKIHVHNVRY-DEELVTFTHSMRGAVTALAFSSDGQ-PLLASGASSGVISIWNLEKR- 257 (809)
Q Consensus 181 ~~~I~~l~~sp~~~~la~g~~dg~i~iwd~~~-~~~~~~~~~~~~~~V~~l~fs~dg~-~~lasg~~dg~I~iwdl~~~- 257 (809)
.+++.++..+|.|+-+|.++.-|.+ +.|+.. +.+.+-+.+...-.|-...|++... .+-++......-.+|++...
T Consensus 24 ~~~~~a~si~p~grdi~lAsr~gl~-i~dld~p~~ppr~l~h~tpw~vad~qws~h~a~~~wiVsts~qkaiiwnlA~ss 102 (1081)
T KOG0309|consen 24 DGGFNAVSINPSGRDIVLASRQGLY-IIDLDDPFTPPRWLHHITPWQVADVQWSPHPAKPYWIVSTSNQKAIIWNLAKSS 102 (1081)
T ss_pred cCcccceeeccccchhhhhhhcCeE-EEeccCCCCCceeeeccCcchhcceecccCCCCceeEEecCcchhhhhhhhcCC
Confidence 5678889999999999999887754 455543 3444444333334677888887642 24444455566678998643
Q ss_pred -eeeeeeecccccceEEEEEecCCC-EEEEEcCCCcEEEEEeeCCCCCceeEEeccCCCCCCeeEEEecCCCEEEEEECC
Q 003579 258 -RLQSVIREAHDNAIISLHFFANEP-VLMSASADNSIKMWIFDTTDGDPRLLRFRSGHSAPPLCIRFYANGRHILSAGQD 335 (809)
Q Consensus 258 -~~~~~~~~~h~~~V~~l~~~~~~~-~l~s~s~d~~i~vw~~~~~~~~~~~~~~~~~h~~~v~~i~~~~~~~~l~s~~~d 335 (809)
+.+..+..+|...|+.+.|.|..+ .+++++.|-.+..||+.... +.+.....-...-..+.|+-....++..+..
T Consensus 103 ~~aIef~lhghsraitd~n~~~q~pdVlatcsvdt~vh~wd~rSp~---~p~ys~~~w~s~asqVkwnyk~p~vlasshg 179 (1081)
T KOG0309|consen 103 SNAIEFVLHGHSRAITDINFNPQHPDVLATCSVDTYVHAWDMRSPH---RPFYSTSSWRSAASQVKWNYKDPNVLASSHG 179 (1081)
T ss_pred ccceEEEEecCccceeccccCCCCCcceeeccccccceeeeccCCC---cceeeeecccccCceeeecccCcchhhhccC
Confidence 444444459999999999999776 88999999999999887654 3343333334445567776633344444445
Q ss_pred CCEEEEEeeecccceecchhhHHHHHhhccchhhhhccCceeEEeeccccccccceeEEeecCCceEEEEEeeeeeecce
Q 003579 336 RAFRLFSVIQDQQSRELSQRHVAKRARKLKMKEEELKLKPVIAFDCAEIRERDWCNVVTCHMDTAQAYVWRLQNFVLGEH 415 (809)
Q Consensus 336 g~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~ 415 (809)
+.+++||++.+...
T Consensus 180 ~~i~vwd~r~gs~p------------------------------------------------------------------ 193 (1081)
T KOG0309|consen 180 NDIFVWDLRKGSTP------------------------------------------------------------------ 193 (1081)
T ss_pred CceEEEeccCCCcc------------------------------------------------------------------
Confidence 55777776543211
Q ss_pred eeecCCCCCCCeEEEEEcCCCCEEEEEeCCCcEEEEECCCCceeeeeeCcccccccCccccEEEEEEcCC-CCEEEEEeC
Q 003579 416 ILRPCPENPTAVKACTISACGNFAVLGTAGGWIERFNLQSGISRGSYLDMSERSNYAHNGEVVGVACDST-NTLMISAGY 494 (809)
Q Consensus 416 ~~~~~~~~~~~v~~v~~s~~g~~l~~g~~~g~i~i~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~-~~~l~s~~~ 494 (809)
+..+ ++|...|.+++|..- ...+.+++.
T Consensus 194 -------------------------------------------l~s~--------K~~vs~vn~~~fnr~~~s~~~s~~~ 222 (1081)
T KOG0309|consen 194 -------------------------------------------LCSL--------KGHVSSVNSIDFNRFKYSEIMSSSN 222 (1081)
T ss_pred -------------------------------------------eEEe--------cccceeeehHHHhhhhhhhhcccCC
Confidence 1111 256667777777542 346788999
Q ss_pred cCeEEEEECCCC--ceeeeeecCCCeEEEEEeeCCCEEEEEe--CCCeEEEEEcC---------C-CeEEEEEecCCCCe
Q 003579 495 HGDIKVWDFKGR--DLKSRWEVGCSLVKIVYHRVNGLLATVA--DDLVIRLFDVV---------A-LRMVRKFEGHTDRI 560 (809)
Q Consensus 495 dg~i~iwd~~~~--~~~~~~~~~~~i~~~~~s~~~~~la~~~--~d~~I~v~d~~---------~-~~~~~~~~~h~~~I 560 (809)
||+|++||.... +..++.....++..-++.|-|.-..+-- .+..+.+++.+ + .+.+.+|.||.+.|
T Consensus 223 d~tvkfw~y~kSt~e~~~~vtt~~piw~~r~~Pfg~g~~~mp~~G~n~v~~~~c~n~d~e~n~~~~~~pVh~F~GH~D~V 302 (1081)
T KOG0309|consen 223 DGTVKFWDYSKSTTESKRTVTTNFPIWRGRYLPFGEGYCIMPMVGGNMVPQLRCENSDLEWNVFDLNTPVHTFVGHDDVV 302 (1081)
T ss_pred CCceeeecccccccccceeccccCcceeccccccCceeEeccccCCeeeeeccccchhhhhccccCCcceeeecCcchHH
Confidence 999999998754 3445555668888888888655333221 12244444332 2 36799999999999
Q ss_pred eeEEECCCC----------CEEEEEeCCCeEEEEEcCC
Q 003579 561 TDFCFSEDG----------KWLLSSGMDGSLRIWDVIL 588 (809)
Q Consensus 561 ~~l~fspdg----------~~l~s~s~D~~I~vwd~~~ 588 (809)
....|-..+ -.|+|-|.|.++|+|-+.+
T Consensus 303 ~eFlWR~r~e~~~d~d~rdfQLVTWSkD~~lrlWpI~~ 340 (1081)
T KOG0309|consen 303 LEFLWRKRKECDGDYDSRDFQLVTWSKDQTLRLWPIDS 340 (1081)
T ss_pred HHHhhhhcccccCCCCccceeEEEeecCCceEeeeccH
Confidence 887774422 1699999999999998754
No 278
>KOG1832 consensus HIV-1 Vpr-binding protein [Cell cycle control, cell division, chromosome partitioning]
Probab=99.18 E-value=2.8e-11 Score=128.97 Aligned_cols=269 Identities=16% Similarity=0.195 Sum_probs=192.9
Q ss_pred eeeeecccccceEEEEEecCCCEEEEEcCCCcEEEEEeeCCCCCceeEEeccCCCCCCeeEEEecCCCEEEEEECCC--C
Q 003579 260 QSVIREAHDNAIISLHFFANEPVLMSASADNSIKMWIFDTTDGDPRLLRFRSGHSAPPLCIRFYANGRHILSAGQDR--A 337 (809)
Q Consensus 260 ~~~~~~~h~~~V~~l~~~~~~~~l~s~s~d~~i~vw~~~~~~~~~~~~~~~~~h~~~v~~i~~~~~~~~l~s~~~dg--~ 337 (809)
..+++ .|+...++++|+.+.+.|+.|+..|.|+++++.++. ......+|..+|+.+.-+.+|..+++.+.-. -
T Consensus 1094 w~~fr-d~~~~fTc~afs~~~~hL~vG~~~Geik~~nv~sG~----~e~s~ncH~SavT~vePs~dgs~~Ltsss~S~Pl 1168 (1516)
T KOG1832|consen 1094 WRSFR-DETALFTCIAFSGGTNHLAVGSHAGEIKIFNVSSGS----MEESVNCHQSAVTLVEPSVDGSTQLTSSSSSSPL 1168 (1516)
T ss_pred chhhh-ccccceeeEEeecCCceEEeeeccceEEEEEccCcc----ccccccccccccccccccCCcceeeeeccccCch
Confidence 34455 678899999999999999999999999999998873 4556679999999999998998877665433 2
Q ss_pred EEEEEeeecccceecchhhHHHHHhhccchhhhhccCceeEEeeccccccccceeEEeecCCceEEEEEeeeeeecceee
Q 003579 338 FRLFSVIQDQQSRELSQRHVAKRARKLKMKEEELKLKPVIAFDCAEIRERDWCNVVTCHMDTAQAYVWRLQNFVLGEHIL 417 (809)
Q Consensus 338 i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~ 417 (809)
..+|++..-... .|.
T Consensus 1169 saLW~~~s~~~~----------------------------------------------------------------~Hs- 1183 (1516)
T KOG1832|consen 1169 SALWDASSTGGP----------------------------------------------------------------RHS- 1183 (1516)
T ss_pred HHHhccccccCc----------------------------------------------------------------ccc-
Confidence 456765321100 111
Q ss_pred ecCCCCCCCeEEEEEcCCCCEEEEEeCCCcEEEEECCCCceeeeeeCcccccccCccccEEEEEEcCCCCEEEEEeCcCe
Q 003579 418 RPCPENPTAVKACTISACGNFAVLGTAGGWIERFNLQSGISRGSYLDMSERSNYAHNGEVVGVACDSTNTLMISAGYHGD 497 (809)
Q Consensus 418 ~~~~~~~~~v~~v~~s~~g~~l~~g~~~g~i~i~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~l~s~~~dg~ 497 (809)
-..-.++.|+..-.+-++|+......+||++++....++..... +....-+...|+|+.++++ .||.
T Consensus 1184 ------f~ed~~vkFsn~~q~r~~gt~~d~a~~YDvqT~~~l~tylt~~~----~~~y~~n~a~FsP~D~LIl---ndGv 1250 (1516)
T KOG1832|consen 1184 ------FDEDKAVKFSNSLQFRALGTEADDALLYDVQTCSPLQTYLTDTV----TSSYSNNLAHFSPCDTLIL---NDGV 1250 (1516)
T ss_pred ------ccccceeehhhhHHHHHhcccccceEEEecccCcHHHHhcCcch----hhhhhccccccCCCcceEe---eCce
Confidence 13445677777777778888888999999999998877542211 2223337788999988776 4553
Q ss_pred EEEEECCCCceeeeeecCCCeEEEEEeeCCCEEEEEeCCCeEEEEEcCCCeEEEEEecCCCCeeeEEECCCCCEEEEEe-
Q 003579 498 IKVWDFKGRDLKSRWEVGCSLVKIVYHRVNGLLATVADDLVIRLFDVVALRMVRKFEGHTDRITDFCFSEDGKWLLSSG- 576 (809)
Q Consensus 498 i~iwd~~~~~~~~~~~~~~~i~~~~~s~~~~~la~~~~d~~I~v~d~~~~~~~~~~~~h~~~I~~l~fspdg~~l~s~s- 576 (809)
+||.+..+.++.+..-..-..-.|||.|.-++..+ .|||++|.++++....-. -..+.|...|..+...-
T Consensus 1251 --LWDvR~~~aIh~FD~ft~~~~G~FHP~g~eVIINS-----EIwD~RTF~lLh~VP~Ld--qc~VtFNstG~VmYa~~~ 1321 (1516)
T KOG1832|consen 1251 --LWDVRIPEAIHRFDQFTDYGGGGFHPSGNEVIINS-----EIWDMRTFKLLHSVPSLD--QCAVTFNSTGDVMYAMLN 1321 (1516)
T ss_pred --eeeeccHHHHhhhhhheecccccccCCCceEEeec-----hhhhhHHHHHHhcCcccc--ceEEEeccCccchhhhhh
Confidence 69999887777775544334457999999888765 489999988776554322 24567777776543221
Q ss_pred ----C------------CCeEEEEEcCCccEEEEeeeCcceEEEEEcCCCCeEEEEEeCC
Q 003579 577 ----M------------DGSLRIWDVILARQIDAIHVDVSITALSLSPNMDVLATAHVDQ 620 (809)
Q Consensus 577 ----~------------D~~I~vwd~~~~~~i~~~~~~~~v~~l~~spdg~~lat~~~d~ 620 (809)
. -...|.+|..+...+.++.....+..++-+|...+|+..-..+
T Consensus 1322 ~~d~~sdvh~~r~k~p~fSSFRTf~a~dYs~iaTi~v~R~~~Dlct~~~D~~l~vIe~~~ 1381 (1516)
T KOG1832|consen 1322 IEDVMSDVHTRRVKHPLFSSFRTFDAIDYSDIATIPVDRCLLDLCTEPTDSFLGVIEMED 1381 (1516)
T ss_pred hhhhhhhhcccccccchhhhhccccccccccceeeecccchhhhhcCCccceEEEEeccC
Confidence 0 1245777878888889999888899999999999988775544
No 279
>KOG1064 consensus RAVE (regulator of V-ATPase assembly) complex subunit RAV1/DMX protein, WD repeat superfamily [General function prediction only]
Probab=99.17 E-value=2.1e-10 Score=131.34 Aligned_cols=225 Identities=15% Similarity=0.264 Sum_probs=171.4
Q ss_pred CEEEEEeCCCeEEEEEeeCCeEEEEEeccCCCcEEEEEEecCCCCEEEEEcCCCcEEEEECCCceeeeeeecccccceEE
Q 003579 194 DVVAVGCSDGKIHVHNVRYDEELVTFTHSMRGAVTALAFSSDGQPLLASGASSGVISIWNLEKRRLQSVIREAHDNAIIS 273 (809)
Q Consensus 194 ~~la~g~~dg~i~iwd~~~~~~~~~~~~~~~~~V~~l~fs~dg~~~lasg~~dg~I~iwdl~~~~~~~~~~~~h~~~V~~ 273 (809)
+.......++...-|..+-+.... .++-..|.++.=+|... +.++|+.||.+++|....+..+...+.+-...|+.
T Consensus 2181 ~~~~~~n~~~~~~tq~~~~~~~~~---k~~v~~v~r~~sHp~~~-~Yltgs~dgsv~~~~w~~~~~v~~~rt~g~s~vtr 2256 (2439)
T KOG1064|consen 2181 NRFTPSNLPWLGSTQTSRGASVMI---KHPVENVRRMTSHPSDP-YYLTGSQDGSVRMFEWGHGQQVVCFRTAGNSRVTR 2256 (2439)
T ss_pred ccCCcccCCccccceecccceeEe---ecccCceeeecCCCCCc-eEEecCCCceEEEEeccCCCeEEEeeccCcchhhh
Confidence 344444445555555544332222 22345788888888877 77899999999999999998888888666789999
Q ss_pred EEEecCCCEEEEEcCCCcEEEEEeeCCCCCceeEEeccCCCCCCeeEEEecCCCEEEEEE---CCCCEEEEEeeecccce
Q 003579 274 LHFFANEPVLMSASADNSIKMWIFDTTDGDPRLLRFRSGHSAPPLCIRFYANGRHILSAG---QDRAFRLFSVIQDQQSR 350 (809)
Q Consensus 274 l~~~~~~~~l~s~s~d~~i~vw~~~~~~~~~~~~~~~~~h~~~v~~i~~~~~~~~l~s~~---~dg~i~~wd~~~~~~~~ 350 (809)
+.|+.+|+.+..+..||.+.+|... ++.......|......++|-. ..+++++ .++.+.+||......
T Consensus 2257 ~~f~~qGnk~~i~d~dg~l~l~q~~-----pk~~~s~qchnk~~~Df~Fi~--s~~~tag~s~d~~n~~lwDtl~~~~-- 2327 (2439)
T KOG1064|consen 2257 SRFNHQGNKFGIVDGDGDLSLWQAS-----PKPYTSWQCHNKALSDFRFIG--SLLATAGRSSDNRNVCLWDTLLPPM-- 2327 (2439)
T ss_pred hhhcccCCceeeeccCCceeecccC-----CcceeccccCCccccceeeee--hhhhccccCCCCCcccchhcccCcc--
Confidence 9999999999999999999999765 356777778999899999876 4566654 356777887422110
Q ss_pred ecchhhHHHHHhhccchhhhhccCceeEEeeccccccccceeEEeecCCceEEEEEeeeeeecceeeecCCCCCCCeEEE
Q 003579 351 ELSQRHVAKRARKLKMKEEELKLKPVIAFDCAEIRERDWCNVVTCHMDTAQAYVWRLQNFVLGEHILRPCPENPTAVKAC 430 (809)
Q Consensus 351 ~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~v~~v 430 (809)
T Consensus 2328 -------------------------------------------------------------------------------- 2327 (2439)
T KOG1064|consen 2328 -------------------------------------------------------------------------------- 2327 (2439)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred EEcCCCCEEEEEeCCCcEEEEECCCCceeeeeeCcccccccCccccEEEEEEcCCCCEEEEEeCcCeEEEEECCCCceee
Q 003579 431 TISACGNFAVLGTAGGWIERFNLQSGISRGSYLDMSERSNYAHNGEVVGVACDSTNTLMISAGYHGDIKVWDFKGRDLKS 510 (809)
Q Consensus 431 ~~s~~g~~l~~g~~~g~i~i~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~ 510 (809)
+.++ ...|.+.++++++.|..+++++||.+|.|++||++..++++
T Consensus 2328 ------~s~v-----------------------------~~~H~~gaT~l~~~P~~qllisggr~G~v~l~D~rqrql~h 2372 (2439)
T KOG1064|consen 2328 ------NSLV-----------------------------HTCHDGGATVLAYAPKHQLLISGGRKGEVCLFDIRQRQLRH 2372 (2439)
T ss_pred ------ccee-----------------------------eeecCCCceEEEEcCcceEEEecCCcCcEEEeehHHHHHHH
Confidence 0000 02788999999999999999999999999999999988888
Q ss_pred eeecCCCeEEEEEeeCCCEEEEEeCCCeEEEEEcCCCeEEEEEec
Q 003579 511 RWEVGCSLVKIVYHRVNGLLATVADDLVIRLFDVVALRMVRKFEG 555 (809)
Q Consensus 511 ~~~~~~~i~~~~~s~~~~~la~~~~d~~I~v~d~~~~~~~~~~~~ 555 (809)
+++. ++ ...++.+|+..|.|+||++.....+..+..
T Consensus 2373 ~~~~--------~~-~~~~f~~~ss~g~ikIw~~s~~~ll~~~p~ 2408 (2439)
T KOG1064|consen 2373 TFQA--------LD-TREYFVTGSSEGNIKIWRLSEFGLLHTFPS 2408 (2439)
T ss_pred Hhhh--------hh-hhheeeccCcccceEEEEccccchhhcCch
Confidence 7765 34 577899999999999999998877777653
No 280
>KOG1064 consensus RAVE (regulator of V-ATPase assembly) complex subunit RAV1/DMX protein, WD repeat superfamily [General function prediction only]
Probab=99.14 E-value=6e-10 Score=127.72 Aligned_cols=180 Identities=16% Similarity=0.254 Sum_probs=143.1
Q ss_pred CCCeEEEEeCCCCceEEEEcCCCCCEEEEEEcCCCCEEEEEeCCCeEEEEEeeCCeEEEEEeccCCCcEEEEEEecCCCC
Q 003579 159 QEGSLQLWNISTKKKLYEFKGWGSSISSCVSSPALDVVAVGCSDGKIHVHNVRYDEELVTFTHSMRGAVTALAFSSDGQP 238 (809)
Q Consensus 159 ~dg~i~lwd~~~~~~~~~~~~~~~~I~~l~~sp~~~~la~g~~dg~i~iwd~~~~~~~~~~~~~~~~~V~~l~fs~dg~~ 238 (809)
.++...-|..+.+... ++.+-..|.++.-+|...+-++|+.||.+++|....++.+..+.......|+.+.|+.+|.
T Consensus 2188 ~~~~~~tq~~~~~~~~--~k~~v~~v~r~~sHp~~~~Yltgs~dgsv~~~~w~~~~~v~~~rt~g~s~vtr~~f~~qGn- 2264 (2439)
T KOG1064|consen 2188 LPWLGSTQTSRGASVM--IKHPVENVRRMTSHPSDPYYLTGSQDGSVRMFEWGHGQQVVCFRTAGNSRVTRSRFNHQGN- 2264 (2439)
T ss_pred CCccccceecccceeE--eecccCceeeecCCCCCceEEecCCCceEEEEeccCCCeEEEeeccCcchhhhhhhcccCC-
Confidence 3444455554433322 2334567888888999899999999999999999999999999876678999999999998
Q ss_pred EEEEEcCCCcEEEEECCCceeeeeeecccccceEEEEEecCCCEEEEEc---CCCcEEEEEeeCCCCCceeEEeccCCCC
Q 003579 239 LLASGASSGVISIWNLEKRRLQSVIREAHDNAIISLHFFANEPVLMSAS---ADNSIKMWIFDTTDGDPRLLRFRSGHSA 315 (809)
Q Consensus 239 ~lasg~~dg~I~iwdl~~~~~~~~~~~~h~~~V~~l~~~~~~~~l~s~s---~d~~i~vw~~~~~~~~~~~~~~~~~h~~ 315 (809)
-...+..||.+.+|... .+.....+ .|........|.. ..+++++ .++.+.+||....... .++. ..|.+
T Consensus 2265 k~~i~d~dg~l~l~q~~-pk~~~s~q-chnk~~~Df~Fi~--s~~~tag~s~d~~n~~lwDtl~~~~~-s~v~--~~H~~ 2337 (2439)
T KOG1064|consen 2265 KFGIVDGDGDLSLWQAS-PKPYTSWQ-CHNKALSDFRFIG--SLLATAGRSSDNRNVCLWDTLLPPMN-SLVH--TCHDG 2337 (2439)
T ss_pred ceeeeccCCceeecccC-Ccceeccc-cCCccccceeeee--hhhhccccCCCCCcccchhcccCccc-ceee--eecCC
Confidence 67778889999999987 55555555 7998999999986 5677765 4788999986655432 2333 68999
Q ss_pred CCeeEEEecCCCEEEEEECCCCEEEEEeeeccc
Q 003579 316 PPLCIRFYANGRHILSAGQDRAFRLFSVIQDQQ 348 (809)
Q Consensus 316 ~v~~i~~~~~~~~l~s~~~dg~i~~wd~~~~~~ 348 (809)
.+++++|.|..+.|++||.+|.+++||++..+.
T Consensus 2338 gaT~l~~~P~~qllisggr~G~v~l~D~rqrql 2370 (2439)
T KOG1064|consen 2338 GATVLAYAPKHQLLISGGRKGEVCLFDIRQRQL 2370 (2439)
T ss_pred CceEEEEcCcceEEEecCCcCcEEEeehHHHHH
Confidence 999999999999999999999999999876544
No 281
>KOG0280 consensus Uncharacterized conserved protein [Amino acid transport and metabolism]
Probab=99.13 E-value=5.6e-09 Score=98.41 Aligned_cols=237 Identities=13% Similarity=0.109 Sum_probs=160.3
Q ss_pred EEEEEeCCCcEEEEEcCCCcc--ccceeeeEEcCCccccEEEEeCCCCCCEEEEEeCCCeEEEEeCCCCce--EEEEcCC
Q 003579 105 HILSIDIDGNMFIWAFKGIEE--NLAPVGHVKLDDKFTPTCIMHPDTYLNKVIVGSQEGSLQLWNISTKKK--LYEFKGW 180 (809)
Q Consensus 105 ~l~s~~~dg~i~vWd~~~~~~--~~~~~~~~~~~~~~~~~~~~~p~~~~~~l~~~~~dg~i~lwd~~~~~~--~~~~~~~ 180 (809)
.|+-+..+|.|.++..+..+. ...++...+.......+.-+++.+ ..++++-.+|.+.+-+.....+ +++.+.|
T Consensus 87 ~l~~a~a~G~i~~~r~~~~~ss~~L~~ls~~ki~~~~~lslD~~~~~--~~i~vs~s~G~~~~v~~t~~~le~vq~wk~H 164 (339)
T KOG0280|consen 87 NLLDAHARGQIQLYRNDEDESSVHLRGLSSKKISVVEALSLDISTSG--TKIFVSDSRGSISGVYETEMVLEKVQTWKVH 164 (339)
T ss_pred eeeeccccceEEEEeeccceeeeeecccchhhhhheeeeEEEeeccC--ceEEEEcCCCcEEEEecceeeeeeccccccc
Confidence 455566788899988765443 111222222222223445588888 7899999999999777655544 4488999
Q ss_pred CCCEEEEEEcC-CCCEEEEEeCCCeEEEEEee-CCeEEEEEeccCCCcEEEEEEecCCCCEEEEEcCCCcEEEEECCC-c
Q 003579 181 GSSISSCVSSP-ALDVVAVGCSDGKIHVHNVR-YDEELVTFTHSMRGAVTALAFSSDGQPLLASGASSGVISIWNLEK-R 257 (809)
Q Consensus 181 ~~~I~~l~~sp-~~~~la~g~~dg~i~iwd~~-~~~~~~~~~~~~~~~V~~l~fs~dg~~~lasg~~dg~I~iwdl~~-~ 257 (809)
..+...+.|+. +.+++.+|+.|+.+.-||++ .++.+.+-..-|...|.+|.-+|...+++++|+.|-.|++||.++ +
T Consensus 165 e~E~Wta~f~~~~pnlvytGgDD~~l~~~D~R~p~~~i~~n~kvH~~GV~SI~ss~~~~~~I~TGsYDe~i~~~DtRnm~ 244 (339)
T KOG0280|consen 165 EFEAWTAKFSDKEPNLVYTGGDDGSLSCWDIRIPKTFIWHNSKVHTSGVVSIYSSPPKPTYIATGSYDECIRVLDTRNMG 244 (339)
T ss_pred ceeeeeeecccCCCceEEecCCCceEEEEEecCCcceeeecceeeecceEEEecCCCCCceEEEeccccceeeeehhccc
Confidence 99999999986 44789999999999999999 444555433344678999999988777999999999999999984 4
Q ss_pred eeeeeeecccccceEEEEEecCCC--EEEEEcCCCcEEEEEeeCCCCC-ceeEEeccCCCCCCeeEEEecCCCEEEEEE-
Q 003579 258 RLQSVIREAHDNAIISLHFFANEP--VLMSASADNSIKMWIFDTTDGD-PRLLRFRSGHSAPPLCIRFYANGRHILSAG- 333 (809)
Q Consensus 258 ~~~~~~~~~h~~~V~~l~~~~~~~--~l~s~s~d~~i~vw~~~~~~~~-~~~~~~~~~h~~~v~~i~~~~~~~~l~s~~- 333 (809)
+.+..-. -.++|+.+.++|.-. +|+++- -+-.++-+.+....+ ...+.....|.+-...-.|......|++|+
T Consensus 245 kPl~~~~--v~GGVWRi~~~p~~~~~lL~~CM-h~G~ki~~~~~~~~e~~~~~~s~~~hdSl~YG~DWd~~~~~lATCsF 321 (339)
T KOG0280|consen 245 KPLFKAK--VGGGVWRIKHHPEIFHRLLAACM-HNGAKILDSSDKVLEFQIVLPSDKIHDSLCYGGDWDSKDSFLATCSF 321 (339)
T ss_pred CccccCc--cccceEEEEecchhhhHHHHHHH-hcCceEEEecccccchheeeeccccccceeeccccccccceeeeeec
Confidence 5555443 458999999998533 344433 344666665544332 224455566766555555644445688875
Q ss_pred CCCCEE-EEEeeec
Q 003579 334 QDRAFR-LFSVIQD 346 (809)
Q Consensus 334 ~dg~i~-~wd~~~~ 346 (809)
.|+.++ +|-..++
T Consensus 322 YDk~~~~~Wl~~t~ 335 (339)
T KOG0280|consen 322 YDKKIRQLWLHITG 335 (339)
T ss_pred cccceeeeeeeccC
Confidence 466645 7755443
No 282
>KOG4532 consensus WD40-like repeat containing protein [General function prediction only]
Probab=99.12 E-value=2.8e-08 Score=92.46 Aligned_cols=272 Identities=11% Similarity=0.080 Sum_probs=178.2
Q ss_pred CCCeEEEEeCCCCc--eEEEEcCCCCCEEEEEEcC-----CCCEEEEEeCCCeEEEEEeeCCeEEEEEeccCCCcEEEEE
Q 003579 159 QEGSLQLWNISTKK--KLYEFKGWGSSISSCVSSP-----ALDVVAVGCSDGKIHVHNVRYDEELVTFTHSMRGAVTALA 231 (809)
Q Consensus 159 ~dg~i~lwd~~~~~--~~~~~~~~~~~I~~l~~sp-----~~~~la~g~~dg~i~iwd~~~~~~~~~~~~~~~~~V~~l~ 231 (809)
....+-+|++-+.. .+... +.+.|.| .-.+||.|+..|...+|...+.+....+...+...|+-..
T Consensus 50 ~t~sv~i~~~y~N~~~iv~~y-------~g~~F~p~s~~~kc~~la~gG~~g~fd~~~~~tn~~h~~~cd~snn~v~~~~ 122 (344)
T KOG4532|consen 50 KTISVPINSHYSNPKGIVEFY-------TGMTFTPGSFINKCVTLADGGASGQFDLFACNTNDGHLYQCDVSNNDVTLVK 122 (344)
T ss_pred ceeeeEeccccCCchhhEEee-------ecccccchHhhccccEEEeccccceeeeecccCcccceeeecccccchhhhh
Confidence 44457777764432 22222 2344544 3458999999999999999977765555443333333322
Q ss_pred EecCCCCEEEEEcCCCcEEEEECCCceeeeeeecccccceEEEEEecCCCEEEEEcCCCcEEEEEeeCCCCCceeEE-ec
Q 003579 232 FSSDGQPLLASGASSGVISIWNLEKRRLQSVIREAHDNAIISLHFFANEPVLMSASADNSIKMWIFDTTDGDPRLLR-FR 310 (809)
Q Consensus 232 fs~dg~~~lasg~~dg~I~iwdl~~~~~~~~~~~~h~~~V~~l~~~~~~~~l~s~s~d~~i~vw~~~~~~~~~~~~~-~~ 310 (809)
=..|.+.-+..++.|.++++.+++.+......... .-.+.++.++++++++++.+....|..|.++.... .+++ ..
T Consensus 123 r~cd~~~~~~i~sndht~k~~~~~~~s~~~~~h~~-~~~~ns~~~snd~~~~~~Vgds~~Vf~y~id~~se--y~~~~~~ 199 (344)
T KOG4532|consen 123 RYCDLKFPLNIASNDHTGKTMVVSGDSNKFAVHNQ-NLTQNSLHYSNDPSWGSSVGDSRRVFRYAIDDESE--YIENIYE 199 (344)
T ss_pred hhcccccceeeccCCcceeEEEEecCcccceeecc-ccceeeeEEcCCCceEEEecCCCcceEEEeCCccc--eeeeeEe
Confidence 22233334666788899999988766544333211 12388999999999999999999999998876543 2333 33
Q ss_pred cCCCCCCeeEEEecCCCEEEEEECCCCEEEEEeeecccceecchhhHHHHHhhccchhhhhccCceeEEeeccccccccc
Q 003579 311 SGHSAPPLCIRFYANGRHILSAGQDRAFRLFSVIQDQQSRELSQRHVAKRARKLKMKEEELKLKPVIAFDCAEIRERDWC 390 (809)
Q Consensus 311 ~~h~~~v~~i~~~~~~~~l~s~~~dg~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~ 390 (809)
......-.+..|+.....++++.+||++.+||++.........
T Consensus 200 a~t~D~gF~~S~s~~~~~FAv~~Qdg~~~I~DVR~~~tpm~~~------------------------------------- 242 (344)
T KOG4532|consen 200 APTSDHGFYNSFSENDLQFAVVFQDGTCAIYDVRNMATPMAEI------------------------------------- 242 (344)
T ss_pred cccCCCceeeeeccCcceEEEEecCCcEEEEEecccccchhhh-------------------------------------
Confidence 3444556788899988899999999999999998764322110
Q ss_pred eeEEeecCCceEEEEEeeeeeecceeeecCCCCCCCeEEEEEcCCC--CEEEEEeCCCcEEEEECCCCceeeeeeCcccc
Q 003579 391 NVVTCHMDTAQAYVWRLQNFVLGEHILRPCPENPTAVKACTISACG--NFAVLGTAGGWIERFNLQSGISRGSYLDMSER 468 (809)
Q Consensus 391 ~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~v~~v~~s~~g--~~l~~g~~~g~i~i~~~~~~~~~~~~~~~~~~ 468 (809)
-...+.|.+.++.+.|++-| .+|+..-.-+.+.+.|++++............
T Consensus 243 --------------------------sstrp~hnGa~R~c~Fsl~g~lDLLf~sEhfs~~hv~D~R~~~~~q~I~i~~d~ 296 (344)
T KOG4532|consen 243 --------------------------SSTRPHHNGAFRVCRFSLYGLLDLLFISEHFSRVHVVDTRNYVNHQVIVIPDDV 296 (344)
T ss_pred --------------------------cccCCCCCCceEEEEecCCCcceEEEEecCcceEEEEEcccCceeeEEecCccc
Confidence 11122467899999999876 46666667789999999998776655432222
Q ss_pred cccCccc-cEEEEEEcCCCCEEEEEeCcCeEEEEECCC
Q 003579 469 SNYAHNG-EVVGVACDSTNTLMISAGYHGDIKVWDFKG 505 (809)
Q Consensus 469 ~~~~h~~-~v~~l~~~~~~~~l~s~~~dg~i~iwd~~~ 505 (809)
...|.. .|.+-.|+.++..+.+...+ .+.=|++.+
T Consensus 297 -~~~~~tq~ifgt~f~~~n~s~~v~~e~-~~ae~ni~s 332 (344)
T KOG4532|consen 297 -ERKHNTQHIFGTNFNNENESNDVKNEL-QGAEYNILS 332 (344)
T ss_pred -cccccccccccccccCCCcccccccch-hhheeeccc
Confidence 223443 48888888888766665543 234455443
No 283
>PLN02919 haloacid dehalogenase-like hydrolase family protein
Probab=99.12 E-value=7.7e-08 Score=114.49 Aligned_cols=75 Identities=9% Similarity=0.165 Sum_probs=61.0
Q ss_pred eEEEEEeeCCCEEEEEeCCCeEEEEEcCCCeEEEEEe-------------cCCCCeeeEEECCCCCEEEEEeCCCeEEEE
Q 003579 518 LVKIVYHRVNGLLATVADDLVIRLFDVVALRMVRKFE-------------GHTDRITDFCFSEDGKWLLSSGMDGSLRIW 584 (809)
Q Consensus 518 i~~~~~s~~~~~la~~~~d~~I~v~d~~~~~~~~~~~-------------~h~~~I~~l~fspdg~~l~s~s~D~~I~vw 584 (809)
...++++++|.++++-..++.|++||..++....... ++-.....++++++|+.+++-+.++.|++|
T Consensus 806 P~Gvavd~dG~LYVADs~N~rIrviD~~tg~v~tiaG~G~~G~~dG~~~~a~l~~P~GIavd~dG~lyVaDt~Nn~Irvi 885 (1057)
T PLN02919 806 PLGVLCAKDGQIYVADSYNHKIKKLDPATKRVTTLAGTGKAGFKDGKALKAQLSEPAGLALGENGRLFVADTNNSLIRYL 885 (1057)
T ss_pred CceeeEeCCCcEEEEECCCCEEEEEECCCCeEEEEeccCCcCCCCCcccccccCCceEEEEeCCCCEEEEECCCCEEEEE
Confidence 4688999999988888899999999998876553321 112357789999999999988999999999
Q ss_pred EcCCccEE
Q 003579 585 DVILARQI 592 (809)
Q Consensus 585 d~~~~~~i 592 (809)
|+.+++.+
T Consensus 886 d~~~~~~~ 893 (1057)
T PLN02919 886 DLNKGEAA 893 (1057)
T ss_pred ECCCCccc
Confidence 99998763
No 284
>PRK11138 outer membrane biogenesis protein BamB; Provisional
Probab=99.12 E-value=6.7e-08 Score=104.20 Aligned_cols=304 Identities=13% Similarity=0.102 Sum_probs=182.5
Q ss_pred CEEEEEeCCCeEEEEeCCCCceEEEEcCCCC--CEE-----EEEEcC--CCCEEEEEeCCCeEEEEEeeCCeEEEEEecc
Q 003579 152 NKVIVGSQEGSLQLWNISTKKKLYEFKGWGS--SIS-----SCVSSP--ALDVVAVGCSDGKIHVHNVRYDEELVTFTHS 222 (809)
Q Consensus 152 ~~l~~~~~dg~i~lwd~~~~~~~~~~~~~~~--~I~-----~l~~sp--~~~~la~g~~dg~i~iwd~~~~~~~~~~~~~ 222 (809)
+++++++.+|.+.-+|.++|+.+........ ... .+.-+| +++.+++++.+|.+.-+|.++|+.+-+....
T Consensus 70 ~~vy~~~~~g~l~ald~~tG~~~W~~~~~~~~~~~~~~~~~~~~~~~~v~~~~v~v~~~~g~l~ald~~tG~~~W~~~~~ 149 (394)
T PRK11138 70 NKVYAADRAGLVKALDADTGKEIWSVDLSEKDGWFSKNKSALLSGGVTVAGGKVYIGSEKGQVYALNAEDGEVAWQTKVA 149 (394)
T ss_pred CEEEEECCCCeEEEEECCCCcEeeEEcCCCcccccccccccccccccEEECCEEEEEcCCCEEEEEECCCCCCcccccCC
Confidence 6799999999999999999999988753220 000 001111 3567888889999999999999988877653
Q ss_pred CCCcEEEEEEecCCCCEEEEEcCCCcEEEEECCCceeeeeeeccccc----ceEEEEEecCCCEEEEEcCCCcEEEEEee
Q 003579 223 MRGAVTALAFSSDGQPLLASGASSGVISIWNLEKRRLQSVIREAHDN----AIISLHFFANEPVLMSASADNSIKMWIFD 298 (809)
Q Consensus 223 ~~~~V~~l~fs~dg~~~lasg~~dg~I~iwdl~~~~~~~~~~~~h~~----~V~~l~~~~~~~~l~s~s~d~~i~vw~~~ 298 (809)
+.+.+--...++ .+++++.+|.|..+|.++|+.+......... ...+.... +..++.++.++.+...+..
T Consensus 150 --~~~~ssP~v~~~--~v~v~~~~g~l~ald~~tG~~~W~~~~~~~~~~~~~~~sP~v~--~~~v~~~~~~g~v~a~d~~ 223 (394)
T PRK11138 150 --GEALSRPVVSDG--LVLVHTSNGMLQALNESDGAVKWTVNLDVPSLTLRGESAPATA--FGGAIVGGDNGRVSAVLME 223 (394)
T ss_pred --CceecCCEEECC--EEEEECCCCEEEEEEccCCCEeeeecCCCCcccccCCCCCEEE--CCEEEEEcCCCEEEEEEcc
Confidence 233221111244 4667788999999999999988777622110 00111111 2346666778887777655
Q ss_pred CCCCCceeEEec-cC-CC-CCCeeEEEec--CCCEEEEEECCCCEEEEEeeecccceecchhhHHHHHhhccchhhhhcc
Q 003579 299 TTDGDPRLLRFR-SG-HS-APPLCIRFYA--NGRHILSAGQDRAFRLFSVIQDQQSRELSQRHVAKRARKLKMKEEELKL 373 (809)
Q Consensus 299 ~~~~~~~~~~~~-~~-h~-~~v~~i~~~~--~~~~l~s~~~dg~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 373 (809)
.+...++..... .+ +. .....+..+| .+..++.++.+|.+..+|..+++..
T Consensus 224 ~G~~~W~~~~~~~~~~~~~~~~~~~~~sP~v~~~~vy~~~~~g~l~ald~~tG~~~------------------------ 279 (394)
T PRK11138 224 QGQLIWQQRISQPTGATEIDRLVDVDTTPVVVGGVVYALAYNGNLVALDLRSGQIV------------------------ 279 (394)
T ss_pred CChhhheeccccCCCccchhcccccCCCcEEECCEEEEEEcCCeEEEEECCCCCEE------------------------
Confidence 443222211000 00 00 0000111122 2446777778888888887665432
Q ss_pred CceeEEeeccccccccceeEEeecCCceEEEEEeeeeeecceeeecCCCCCCCeEEEEEcCCCCEEEEEeCCCcEEEEEC
Q 003579 374 KPVIAFDCAEIRERDWCNVVTCHMDTAQAYVWRLQNFVLGEHILRPCPENPTAVKACTISACGNFAVLGTAGGWIERFNL 453 (809)
Q Consensus 374 ~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~v~~v~~s~~g~~l~~g~~~g~i~i~~~ 453 (809)
|.... .....+ ...+..+++++.+|.+..+|.
T Consensus 280 -------------------------------W~~~~---------------~~~~~~--~~~~~~vy~~~~~g~l~ald~ 311 (394)
T PRK11138 280 -------------------------------WKREY---------------GSVNDF--AVDGGRIYLVDQNDRVYALDT 311 (394)
T ss_pred -------------------------------EeecC---------------CCccCc--EEECCEEEEEcCCCeEEEEEC
Confidence 22110 000011 124678888889999999999
Q ss_pred CCCceeeeeeCcccccccCccccEEEEEEcCCCCEEEEEeCcCeEEEEECCCCceeeeeecC-CCeEE-EEEeeCCCEEE
Q 003579 454 QSGISRGSYLDMSERSNYAHNGEVVGVACDSTNTLMISAGYHGDIKVWDFKGRDLKSRWEVG-CSLVK-IVYHRVNGLLA 531 (809)
Q Consensus 454 ~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~-~~i~~-~~~s~~~~~la 531 (809)
.+|+.+...... .+ ....+..+ .+.+++.++.||.|...|..+|+.+...+.. ..+.+ ..+ .+..|+
T Consensus 312 ~tG~~~W~~~~~------~~-~~~~sp~v--~~g~l~v~~~~G~l~~ld~~tG~~~~~~~~~~~~~~s~P~~--~~~~l~ 380 (394)
T PRK11138 312 RGGVELWSQSDL------LH-RLLTAPVL--YNGYLVVGDSEGYLHWINREDGRFVAQQKVDSSGFLSEPVV--ADDKLL 380 (394)
T ss_pred CCCcEEEccccc------CC-CcccCCEE--ECCEEEEEeCCCEEEEEECCCCCEEEEEEcCCCcceeCCEE--ECCEEE
Confidence 999876543210 11 11222222 2456788899999999999999998887654 22322 122 356788
Q ss_pred EEeCCCeEEEEEc
Q 003579 532 TVADDLVIRLFDV 544 (809)
Q Consensus 532 ~~~~d~~I~v~d~ 544 (809)
+++.||.++.++.
T Consensus 381 v~t~~G~l~~~~~ 393 (394)
T PRK11138 381 IQARDGTVYAITR 393 (394)
T ss_pred EEeCCceEEEEeC
Confidence 8899999988764
No 285
>KOG1897 consensus Damage-specific DNA binding complex, subunit DDB1 [Replication, recombination and repair]
Probab=99.10 E-value=5.2e-05 Score=83.94 Aligned_cols=521 Identities=14% Similarity=0.078 Sum_probs=281.7
Q ss_pred CCcceEEEEcCCeEEEEEEcCCeEEEEEcCccEEE----Eec--CCCCCCcEEEEEeC-----CeEEEEE-CC----eEE
Q 003579 15 SSVPFSVQRLGTENFVTVSVGKAFHIYNCAKLNLV----LVG--PQLPKKIRALASYR-----DYTFAAY-GN----HIA 78 (809)
Q Consensus 15 ~~v~~~~~~~~~~~~i~~~~~~~i~iwd~~~~~~~----~~~--~~~~~~I~~la~~~-----~~~~~a~-g~----~i~ 78 (809)
..++-++.+.+..++.++|.-+.=++-.+.+..-. -.. -.--++|..|.+-. .+.++.| |. .++
T Consensus 306 ~siassi~~L~ng~lFvGS~~gdSqLi~L~~e~d~gsy~~ilet~~NLgPI~Dm~Vvd~d~q~q~qivtCsGa~kdgSLR 385 (1096)
T KOG1897|consen 306 TSIASSINYLDNGVLFVGSRFGDSQLIKLNTEPDVGSYVVILETFVNLGPIVDMCVVDLDRQGQGQIVTCSGAFKDGSLR 385 (1096)
T ss_pred cchhhhhhcccCceEEEeccCCceeeEEccccCCCCchhhhhhhcccccceeeEEEEeccccCCceEEEEeCCCCCCcEE
Confidence 55667777888889999888443355555432111 111 11234777777543 2555555 32 288
Q ss_pred EEECCee---EEE--EccccccEEEEE--E---eCCEEEEEeCCCcEEEEEcCCCccccceeeeEEcCCccccEEEEeCC
Q 003579 79 VVKRAHQ---VAT--WSRHSAKVNLLL--L---FGEHILSIDIDGNMFIWAFKGIEENLAPVGHVKLDDKFTPTCIMHPD 148 (809)
Q Consensus 79 vw~~~~~---~~~--~~~h~~~V~~l~--~---~g~~l~s~~~dg~i~vWd~~~~~~~~~~~~~~~~~~~~~~~~~~~p~ 148 (809)
+.+.+-. .+. +.| -..+..+. + ..++|+.+- -+.-++..+...-. ......-..-..+.+++.-
T Consensus 386 iiRngi~I~e~A~i~l~G-ikg~w~lk~~v~~~~d~ylvlsf-~~eTrvl~i~~e~e----e~~~~gf~~~~~Tif~S~i 459 (1096)
T KOG1897|consen 386 IIRNGIGIDELASIDLPG-IKGMWSLKSMVDENYDNYLVLSF-ISETRVLNISEEVE----ETEDPGFSTDEQTIFCSTI 459 (1096)
T ss_pred EEecccccceeeEeecCC-ccceeEeeccccccCCcEEEEEe-ccceEEEEEccceE----EeccccccccCceEEEEcc
Confidence 8876532 222 455 23344444 2 234555443 33334444433211 0111111122234444444
Q ss_pred CCCCEEEEEeCCCeEEEEeCCCCceEEEEcCCCCCEEEEEEcCCCCEEEEEeCCCeEEEEEeeCCeEEEEEeccCCCcEE
Q 003579 149 TYLNKVIVGSQEGSLQLWNISTKKKLYEFKGWGSSISSCVSSPALDVVAVGCSDGKIHVHNVRYDEELVTFTHSMRGAVT 228 (809)
Q Consensus 149 ~~~~~l~~~~~dg~i~lwd~~~~~~~~~~~~~~~~I~~l~~sp~~~~la~g~~dg~i~iwd~~~~~~~~~~~~~~~~~V~ 228 (809)
.+ +.|+-... ..|++++-. .....+.. .+.++....+.+...+++++.++.+...++..+.............|.
T Consensus 460 ~g-~~lvQvTs-~~iRl~ss~--~~~~~W~~-p~~~ti~~~~~n~sqVvvA~~~~~l~y~~i~~~~l~e~~~~~~e~eva 534 (1096)
T KOG1897|consen 460 NG-NQLVQVTS-NSIRLVSSA--GLRSEWRP-PGKITIGVVSANASQVVVAGGGLALFYLEIEDGGLREVSHKEFEYEVA 534 (1096)
T ss_pred CC-ceEEEEec-ccEEEEcch--hhhhcccC-CCceEEEEEeecceEEEEecCccEEEEEEeeccceeeeeeheecceeE
Confidence 43 44554433 358888754 34444443 455666666666667888887788877777766633333333356899
Q ss_pred EEEEecC--CCC---EEEEEcCCCcEEEE-ECCCceeeeeeeccc---ccceEEEEEecCCCEEEEEcCCCcEEEEEeeC
Q 003579 229 ALAFSSD--GQP---LLASGASSGVISIW-NLEKRRLQSVIREAH---DNAIISLHFFANEPVLMSASADNSIKMWIFDT 299 (809)
Q Consensus 229 ~l~fs~d--g~~---~lasg~~dg~I~iw-dl~~~~~~~~~~~~h---~~~V~~l~~~~~~~~l~s~s~d~~i~vw~~~~ 299 (809)
|+.++|- ++. ++++|..+..+.+. -+.+...+.....+- ...|.-.++-.|..+|.++..||.+..+.++.
T Consensus 535 CLDisp~~d~~~~s~~~aVG~Ws~~~~~l~~~pd~~~~~~~~l~~~~iPRSIl~~~~e~d~~yLlvalgdG~l~~fv~d~ 614 (1096)
T KOG1897|consen 535 CLDISPLGDAPNKSRLLAVGLWSDISMILTFLPDLILITHEQLSGEIIPRSILLTTFEGDIHYLLVALGDGALLYFVLDI 614 (1096)
T ss_pred EEecccCCCCCCcceEEEEEeecceEEEEEECCCcceeeeeccCCCccchheeeEEeeccceEEEEEcCCceEEEEEEEc
Confidence 9999975 333 88888866555443 333333333221111 23455555666688999999999999999998
Q ss_pred CCCCceeEEeccCCCCCCeeEEEecCCCEEEEEECCCCEEEEEeeecccceecchhhHHHHHhhccchhhhhccCceeEE
Q 003579 300 TDGDPRLLRFRSGHSAPPLCIRFYANGRHILSAGQDRAFRLFSVIQDQQSRELSQRHVAKRARKLKMKEEELKLKPVIAF 379 (809)
Q Consensus 300 ~~~~~~~~~~~~~h~~~v~~i~~~~~~~~l~s~~~dg~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~ 379 (809)
.++...-.+...--..|+.--.|+..++.-+.+..|+-..+|.....-....++....
T Consensus 615 ~tg~lsd~Kk~~lGt~P~~Lr~f~sk~~t~vfa~sdrP~viY~~n~kLv~spls~kev---------------------- 672 (1096)
T KOG1897|consen 615 NTGQLSDRKKVTLGTQPISLRTFSSKSRTAVFALSDRPTVIYSSNGKLVYSPLSLKEV---------------------- 672 (1096)
T ss_pred ccceEccccccccCCCCcEEEEEeeCCceEEEEeCCCCEEEEecCCcEEEeccchHHh----------------------
Confidence 8765444443333456777777877666556666677766766433221111111100
Q ss_pred eeccccccccceeEEeecCCceEEEEEeeeeeecceeeecCCCCCCCeEEEEEcCCCCEEEEEeCCCcEEEEECCCCc--
Q 003579 380 DCAEIRERDWCNVVTCHMDTAQAYVWRLQNFVLGEHILRPCPENPTAVKACTISACGNFAVLGTAGGWIERFNLQSGI-- 457 (809)
Q Consensus 380 ~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~v~~v~~s~~g~~l~~g~~~g~i~i~~~~~~~-- 457 (809)
..+....-...+..++.+ ..+.+.+.-+..-.
T Consensus 673 ---------------------------------------------~~~c~f~s~a~~d~l~~~-~~~~l~i~tid~iqkl 706 (1096)
T KOG1897|consen 673 ---------------------------------------------NHMCPFNSDAYPDSLASA-NGGALTIGTIDEIQKL 706 (1096)
T ss_pred ---------------------------------------------hhhcccccccCCceEEEe-cCCceEEEEecchhhc
Confidence 000000001112233332 22333333332211
Q ss_pred eeeeeeCcccccccCccccEEEEEEcCCCCEEEEEeC-----------c---CeEEEEECCCCceeeeeecC-----CCe
Q 003579 458 SRGSYLDMSERSNYAHNGEVVGVACDSTNTLMISAGY-----------H---GDIKVWDFKGRDLKSRWEVG-----CSL 518 (809)
Q Consensus 458 ~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~l~s~~~-----------d---g~i~iwd~~~~~~~~~~~~~-----~~i 518 (809)
+.++. .-......+++.+....+.+.+. . ..++++|-++.+.++..+.. ..+
T Consensus 707 ~irtv---------pl~~~prrI~~q~~sl~~~v~s~r~e~~~~~~~ee~~~s~l~vlD~nTf~vl~~hef~~~E~~~Si 777 (1096)
T KOG1897|consen 707 HIRTV---------PLGESPRRICYQESSLTFGVLSNRIESSAEYYGEEYEVSFLRVLDQNTFEVLSSHEFERNETALSI 777 (1096)
T ss_pred ceeee---------cCCCChhheEecccceEEEEEecccccchhhcCCcceEEEEEEecCCceeEEeeccccccceeeee
Confidence 11111 11223344444443333332221 1 24778887777776665544 455
Q ss_pred EEEEEeeC-CCEEEEEeC----------CCeEEEEEcCCCeEEEEEecC--CCCeeeEEECCCCCEEEEEeCCCeEEEEE
Q 003579 519 VKIVYHRV-NGLLATVAD----------DLVIRLFDVVALRMVRKFEGH--TDRITDFCFSEDGKWLLSSGMDGSLRIWD 585 (809)
Q Consensus 519 ~~~~~s~~-~~~la~~~~----------d~~I~v~d~~~~~~~~~~~~h--~~~I~~l~fspdg~~l~s~s~D~~I~vwd 585 (809)
.++.|..| +.++++|.. .|.|.||....++.++....+ .+.+.++.-- +|++||. -...||+|+
T Consensus 778 ~s~~~~~d~~t~~vVGT~~v~Pde~ep~~GRIivfe~~e~~~L~~v~e~~v~Gav~aL~~f-ngkllA~--In~~vrLye 854 (1096)
T KOG1897|consen 778 ISCKFTDDPNTYYVVGTGLVYPDENEPVNGRIIVFEFEELNSLELVAETVVKGAVYALVEF-NGKLLAG--INQSVRLYE 854 (1096)
T ss_pred eeeeecCCCceEEEEEEEeeccCCCCcccceEEEEEEecCCceeeeeeeeeccceeehhhh-CCeEEEe--cCcEEEEEE
Confidence 66668887 778888753 578888888774433333322 3555555432 5776654 457899999
Q ss_pred cCCccEEE-EeeeCcceEEEEEcCCCCeEEEEEeCCCeEEEee
Q 003579 586 VILARQID-AIHVDVSITALSLSPNMDVLATAHVDQNGVYLWV 627 (809)
Q Consensus 586 ~~~~~~i~-~~~~~~~v~~l~~spdg~~lat~~~d~~~i~lW~ 627 (809)
..+.+.++ .-....++..+...-.|+.++.|..-+ ++.+-.
T Consensus 855 ~t~~~eLr~e~~~~~~~~aL~l~v~gdeI~VgDlm~-Sitll~ 896 (1096)
T KOG1897|consen 855 WTTERELRIECNISNPIIALDLQVKGDEIAVGDLMR-SITLLQ 896 (1096)
T ss_pred ccccceehhhhcccCCeEEEEEEecCcEEEEeeccc-eEEEEE
Confidence 99885543 334556788888888999999998766 465543
No 286
>PRK04043 tolB translocation protein TolB; Provisional
Probab=99.06 E-value=4.8e-08 Score=104.65 Aligned_cols=190 Identities=11% Similarity=-0.018 Sum_probs=129.1
Q ss_pred CeEEEEEcCCCCE-EEEEeCC---CcEEEEECCCCceeeeeeCcccccccCccccEEEEEEcCCCCEEEEE-eC--cCeE
Q 003579 426 AVKACTISACGNF-AVLGTAG---GWIERFNLQSGISRGSYLDMSERSNYAHNGEVVGVACDSTNTLMISA-GY--HGDI 498 (809)
Q Consensus 426 ~v~~v~~s~~g~~-l~~g~~~---g~i~i~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~l~s~-~~--dg~i 498 (809)
......|+|||+. ++..+.. ..|+++|+.+++..... ...+......|+|||+.++.. +. +..|
T Consensus 189 ~~~~p~wSpDG~~~i~y~s~~~~~~~Iyv~dl~tg~~~~lt---------~~~g~~~~~~~SPDG~~la~~~~~~g~~~I 259 (419)
T PRK04043 189 LNIFPKWANKEQTAFYYTSYGERKPTLYKYNLYTGKKEKIA---------SSQGMLVVSDVSKDGSKLLLTMAPKGQPDI 259 (419)
T ss_pred CeEeEEECCCCCcEEEEEEccCCCCEEEEEECCCCcEEEEe---------cCCCcEEeeEECCCCCEEEEEEccCCCcEE
Confidence 5678899999985 5544333 57999999888765543 234455677899999876644 33 3568
Q ss_pred EEEECCCCceeeeeecCCCeEEEEEeeCCCEEEEEeCC---CeEEEEEcCCCeEEEEEecCCCCeeeEEECCCCCEEEEE
Q 003579 499 KVWDFKGRDLKSRWEVGCSLVKIVYHRVNGLLATVADD---LVIRLFDVVALRMVRKFEGHTDRITDFCFSEDGKWLLSS 575 (809)
Q Consensus 499 ~iwd~~~~~~~~~~~~~~~i~~~~~s~~~~~la~~~~d---~~I~v~d~~~~~~~~~~~~h~~~I~~l~fspdg~~l~s~ 575 (809)
.++|+.+++...............|+|||+.|+..++. ..|+++|+.+++..+.... .. ....|||||++|+..
T Consensus 260 y~~dl~~g~~~~LT~~~~~d~~p~~SPDG~~I~F~Sdr~g~~~Iy~~dl~~g~~~rlt~~-g~--~~~~~SPDG~~Ia~~ 336 (419)
T PRK04043 260 YLYDTNTKTLTQITNYPGIDVNGNFVEDDKRIVFVSDRLGYPNIFMKKLNSGSVEQVVFH-GK--NNSSVSTYKNYIVYS 336 (419)
T ss_pred EEEECCCCcEEEcccCCCccCccEECCCCCEEEEEECCCCCceEEEEECCCCCeEeCccC-CC--cCceECCCCCEEEEE
Confidence 88898888755433333334566899999988887653 2788899988876444332 11 124899999999876
Q ss_pred eCC---------CeEEEEEcCCccEEEEeeeCcceEEEEEcCCCCeEEEEEeCCCeEEEeec
Q 003579 576 GMD---------GSLRIWDVILARQIDAIHVDVSITALSLSPNMDVLATAHVDQNGVYLWVN 628 (809)
Q Consensus 576 s~D---------~~I~vwd~~~~~~i~~~~~~~~v~~l~~spdg~~lat~~~d~~~i~lW~~ 628 (809)
+.. ..|.+.|+.++.... +..........|||||++|+.....+..-.||-+
T Consensus 337 ~~~~~~~~~~~~~~I~v~d~~~g~~~~-LT~~~~~~~p~~SPDG~~I~f~~~~~~~~~L~~~ 397 (419)
T PRK04043 337 SRETNNEFGKNTFNLYLISTNSDYIRR-LTANGVNQFPRFSSDGGSIMFIKYLGNQSALGII 397 (419)
T ss_pred EcCCCcccCCCCcEEEEEECCCCCeEE-CCCCCCcCCeEECCCCCEEEEEEccCCcEEEEEE
Confidence 643 368888998886543 3323334468999999999888766544445543
No 287
>KOG4190 consensus Uncharacterized conserved protein [Function unknown]
Probab=99.05 E-value=1.9e-09 Score=109.39 Aligned_cols=287 Identities=17% Similarity=0.202 Sum_probs=194.0
Q ss_pred ccccceEEEEEecCCCEEEEEcCCCcEEEEEeeCCCCC---ceeEEeccCCCCCCeeEEEecCCCEEEEEECCCCEEEEE
Q 003579 266 AHDNAIISLHFFANEPVLMSASADNSIKMWIFDTTDGD---PRLLRFRSGHSAPPLCIRFYANGRHILSAGQDRAFRLFS 342 (809)
Q Consensus 266 ~h~~~V~~l~~~~~~~~l~s~s~d~~i~vw~~~~~~~~---~~~~~~~~~h~~~v~~i~~~~~~~~l~s~~~dg~i~~wd 342 (809)
+|...|..+.-..+.+-+++++.|++|++|.+...... ..+..+...|..+|..+.|..+.++++++ ||.+.+||
T Consensus 733 GH~~~iRai~AidNENSFiSASkDKTVKLWSik~EgD~~~tsaCQfTY~aHkk~i~~igfL~~lr~i~Sc--D~giHlWD 810 (1034)
T KOG4190|consen 733 GHQEKIRAIAAIDNENSFISASKDKTVKLWSIKPEGDEIGTSACQFTYQAHKKPIHDIGFLADLRSIASC--DGGIHLWD 810 (1034)
T ss_pred CcHHHhHHHHhcccccceeeccCCceEEEEEeccccCccccceeeeEhhhccCcccceeeeeccceeeec--cCcceeec
Confidence 89999999998889999999999999999998765432 34667788999999999999998888765 78899999
Q ss_pred eeecccceecchhhHHHHHhhccchhhhhccCceeEEeeccccccccceeEEeecCCceEEEEEeeeeeecceeeecCCC
Q 003579 343 VIQDQQSRELSQRHVAKRARKLKMKEEELKLKPVIAFDCAEIRERDWCNVVTCHMDTAQAYVWRLQNFVLGEHILRPCPE 422 (809)
Q Consensus 343 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~ 422 (809)
.-.+.....+... +..+
T Consensus 811 PFigr~Laq~~da---------------------------------------------------------------pk~~ 827 (1034)
T KOG4190|consen 811 PFIGRLLAQMEDA---------------------------------------------------------------PKEG 827 (1034)
T ss_pred ccccchhHhhhcC---------------------------------------------------------------cccC
Confidence 7655433221100 0001
Q ss_pred CCCCeEEEEEcCCCCEEEEE-eCCCcEEEEECCCCceeeeeeCcccccccCccccEEEEEEcCCCCEEEEEeCcCeEEEE
Q 003579 423 NPTAVKACTISACGNFAVLG-TAGGWIERFNLQSGISRGSYLDMSERSNYAHNGEVVGVACDSTNTLMISAGYHGDIKVW 501 (809)
Q Consensus 423 ~~~~v~~v~~s~~g~~l~~g-~~~g~i~i~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~l~s~~~dg~i~iw 501 (809)
..+.|.++. +-+...++.| +...+|+++|.+++.-...+.... ..+.+.-+.++++.+.|++++.+-..|.|.+.
T Consensus 828 a~~~ikcl~-nv~~~iliAgcsaeSTVKl~DaRsce~~~E~kVcn---a~~Pna~~R~iaVa~~GN~lAa~LSnGci~~L 903 (1034)
T KOG4190|consen 828 AGGNIKCLE-NVDRHILIAGCSAESTVKLFDARSCEWTCELKVCN---APGPNALTRAIAVADKGNKLAAALSNGCIAIL 903 (1034)
T ss_pred CCceeEecc-cCcchheeeeccchhhheeeecccccceeeEEecc---CCCCchheeEEEeccCcchhhHHhcCCcEEEE
Confidence 112233322 1133444444 678899999999988777665221 13556779999999999999999999999999
Q ss_pred ECCCCceeeeeecC-CCeEEEEEeeCCCEEEEEeCCCeEEE-EEcCCCeEEEEEecCCCCeeeEEECCCCCEEEEEeCCC
Q 003579 502 DFKGRDLKSRWEVG-CSLVKIVYHRVNGLLATVADDLVIRL-FDVVALRMVRKFEGHTDRITDFCFSEDGKWLLSSGMDG 579 (809)
Q Consensus 502 d~~~~~~~~~~~~~-~~i~~~~~s~~~~~la~~~~d~~I~v-~d~~~~~~~~~~~~h~~~I~~l~fspdg~~l~s~s~D~ 579 (809)
|.++|+.+..+... .....++ .|....++....|.++.| |..-.+....+.+....+..-+ -.-|.-|+++....
T Consensus 904 DaR~G~vINswrpmecdllqla-apsdq~L~~saldHslaVnWhaldgimh~q~kpppepahfl--qsvgpSLV~a~~Gn 980 (1034)
T KOG4190|consen 904 DARNGKVINSWRPMECDLLQLA-APSDQALAQSALDHSLAVNWHALDGIMHLQDKPPPEPAHFL--QSVGPSLVTAQNGN 980 (1034)
T ss_pred ecCCCceeccCCcccchhhhhc-CchhHHHHhhcccceeEeeehhcCCeeeeccCCCCcchhhh--hccCceeEEeccCc
Confidence 99999988776543 3333333 244556777777888888 8777776655555433332211 22466788888888
Q ss_pred eEEEEEcC-C---ccEEEEe---eeCcceEEEEEcCCCCeEEEEEeCCCeEEE
Q 003579 580 SLRIWDVI-L---ARQIDAI---HVDVSITALSLSPNMDVLATAHVDQNGVYL 625 (809)
Q Consensus 580 ~I~vwd~~-~---~~~i~~~---~~~~~v~~l~~spdg~~lat~~~d~~~i~l 625 (809)
.+.||.-. . -..+..+ ......++++.-|-+.-+..+...|. |.+
T Consensus 981 ~lgVYad~a~~ha~stitKiR~d~f~G~lTala~LPLN~afLaGne~G~-IaL 1032 (1034)
T KOG4190|consen 981 ILGVYADSAELHAESTITKIRPDEFPGTLTALAPLPLNCAFLAGNEHGA-IAL 1032 (1034)
T ss_pred EEEEEecchhhhhhhhhccccccccCCccceeeeccccchhhccCCCCc-eee
Confidence 88888421 1 1112222 23445888888886655555655553 544
No 288
>PLN02919 haloacid dehalogenase-like hydrolase family protein
Probab=99.05 E-value=2.2e-07 Score=110.66 Aligned_cols=125 Identities=14% Similarity=0.134 Sum_probs=86.0
Q ss_pred CCeEEEEEcCCCCEEEEE-eCCCcEEEEECCCCceeeeeeCcc-----ccc--------ccCccccEEEEEEcCCCCEEE
Q 003579 425 TAVKACTISACGNFAVLG-TAGGWIERFNLQSGISRGSYLDMS-----ERS--------NYAHNGEVVGVACDSTNTLMI 490 (809)
Q Consensus 425 ~~v~~v~~s~~g~~l~~g-~~~g~i~i~~~~~~~~~~~~~~~~-----~~~--------~~~h~~~v~~l~~~~~~~~l~ 490 (809)
.....++++|+|+.++++ +.++.|++||+.++.......... ... ....-....+++++++|.+++
T Consensus 740 ~~P~GIavspdG~~LYVADs~n~~Irv~D~~tg~~~~~~gg~~~~~~~l~~fG~~dG~g~~~~l~~P~Gvavd~dG~LYV 819 (1057)
T PLN02919 740 AQPSGISLSPDLKELYIADSESSSIRALDLKTGGSRLLAGGDPTFSDNLFKFGDHDGVGSEVLLQHPLGVLCAKDGQIYV 819 (1057)
T ss_pred cCccEEEEeCCCCEEEEEECCCCeEEEEECCCCcEEEEEecccccCcccccccCCCCchhhhhccCCceeeEeCCCcEEE
Confidence 345678888888755444 455788888887665321110000 000 001112346899999999989
Q ss_pred EEeCcCeEEEEECCCCceeeeeecC--------------CCeEEEEEeeCCCEEEEEeCCCeEEEEEcCCCeE
Q 003579 491 SAGYHGDIKVWDFKGRDLKSRWEVG--------------CSLVKIVYHRVNGLLATVADDLVIRLFDVVALRM 549 (809)
Q Consensus 491 s~~~dg~i~iwd~~~~~~~~~~~~~--------------~~i~~~~~s~~~~~la~~~~d~~I~v~d~~~~~~ 549 (809)
+-..++.|++||..++......... .....++++++|+++++-+.++.|++||+.+++.
T Consensus 820 ADs~N~rIrviD~~tg~v~tiaG~G~~G~~dG~~~~a~l~~P~GIavd~dG~lyVaDt~Nn~Irvid~~~~~~ 892 (1057)
T PLN02919 820 ADSYNHKIKKLDPATKRVTTLAGTGKAGFKDGKALKAQLSEPAGLALGENGRLFVADTNNSLIRYLDLNKGEA 892 (1057)
T ss_pred EECCCCEEEEEECCCCeEEEEeccCCcCCCCCcccccccCCceEEEEeCCCCEEEEECCCCEEEEEECCCCcc
Confidence 8899999999999887665433211 2577899999999888888999999999998865
No 289
>PRK11138 outer membrane biogenesis protein BamB; Provisional
Probab=98.99 E-value=7.9e-07 Score=95.93 Aligned_cols=307 Identities=13% Similarity=0.059 Sum_probs=179.9
Q ss_pred CCCEEEEEeCCCeEEEEEeeCCeEEEEEeccCCCcE----------EEEEEecCCCCEEEEEcCCCcEEEEECCCceeee
Q 003579 192 ALDVVAVGCSDGKIHVHNVRYDEELVTFTHSMRGAV----------TALAFSSDGQPLLASGASSGVISIWNLEKRRLQS 261 (809)
Q Consensus 192 ~~~~la~g~~dg~i~iwd~~~~~~~~~~~~~~~~~V----------~~l~fs~dg~~~lasg~~dg~I~iwdl~~~~~~~ 261 (809)
.+..+++++.+|.+.-+|.++|+.+-+......... ..+.. ++. .++.++.+|.+..+|.++|+.+.
T Consensus 68 ~~~~vy~~~~~g~l~ald~~tG~~~W~~~~~~~~~~~~~~~~~~~~~~~~v--~~~-~v~v~~~~g~l~ald~~tG~~~W 144 (394)
T PRK11138 68 AYNKVYAADRAGLVKALDADTGKEIWSVDLSEKDGWFSKNKSALLSGGVTV--AGG-KVYIGSEKGQVYALNAEDGEVAW 144 (394)
T ss_pred ECCEEEEECCCCeEEEEECCCCcEeeEEcCCCcccccccccccccccccEE--ECC-EEEEEcCCCEEEEEECCCCCCcc
Confidence 356788888889999999999998877654321101 01111 233 46677889999999999999888
Q ss_pred eeecccccceEEEEEecCCCEEEEEcCCCcEEEEEeeCCCCCceeEEec-----cCCCCCCeeEEEecCCCEEEEEECCC
Q 003579 262 VIREAHDNAIISLHFFANEPVLMSASADNSIKMWIFDTTDGDPRLLRFR-----SGHSAPPLCIRFYANGRHILSAGQDR 336 (809)
Q Consensus 262 ~~~~~h~~~V~~l~~~~~~~~l~s~s~d~~i~vw~~~~~~~~~~~~~~~-----~~h~~~v~~i~~~~~~~~l~s~~~dg 336 (809)
... .. +.+.+--.. .+..++.+..++.+..+|..++...++..... .+...| .. .+..++.++.++
T Consensus 145 ~~~-~~-~~~~ssP~v-~~~~v~v~~~~g~l~ald~~tG~~~W~~~~~~~~~~~~~~~sP----~v--~~~~v~~~~~~g 215 (394)
T PRK11138 145 QTK-VA-GEALSRPVV-SDGLVLVHTSNGMLQALNESDGAVKWTVNLDVPSLTLRGESAP----AT--AFGGAIVGGDNG 215 (394)
T ss_pred ccc-CC-CceecCCEE-ECCEEEEECCCCEEEEEEccCCCEeeeecCCCCcccccCCCCC----EE--ECCEEEEEcCCC
Confidence 776 22 222221111 13356667778887777665553222211000 001111 11 123566677788
Q ss_pred CEEEEEeeecccceecchhhHHHHHhhccchhhhhccCceeEEeeccccccccceeEEeecCCceEEEEEeeeeeeccee
Q 003579 337 AFRLFSVIQDQQSRELSQRHVAKRARKLKMKEEELKLKPVIAFDCAEIRERDWCNVVTCHMDTAQAYVWRLQNFVLGEHI 416 (809)
Q Consensus 337 ~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~ 416 (809)
.+..++..+++...+....... +...
T Consensus 216 ~v~a~d~~~G~~~W~~~~~~~~------------------------------------------------------~~~~ 241 (394)
T PRK11138 216 RVSAVLMEQGQLIWQQRISQPT------------------------------------------------------GATE 241 (394)
T ss_pred EEEEEEccCChhhheeccccCC------------------------------------------------------Cccc
Confidence 8888887666543221100000 0000
Q ss_pred eecCCCCCCCeEEEEEcC--CCCEEEEEeCCCcEEEEECCCCceeeeeeCcccccccCccccEEEEEEcCCCCEEEEEeC
Q 003579 417 LRPCPENPTAVKACTISA--CGNFAVLGTAGGWIERFNLQSGISRGSYLDMSERSNYAHNGEVVGVACDSTNTLMISAGY 494 (809)
Q Consensus 417 ~~~~~~~~~~v~~v~~s~--~g~~l~~g~~~g~i~i~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~l~s~~~ 494 (809)
+ .....+..+| .+..+++++.+|.+..+|..+|+.+..... +. ...+.. .+..++.++.
T Consensus 242 ~-------~~~~~~~~sP~v~~~~vy~~~~~g~l~ald~~tG~~~W~~~~-------~~---~~~~~~--~~~~vy~~~~ 302 (394)
T PRK11138 242 I-------DRLVDVDTTPVVVGGVVYALAYNGNLVALDLRSGQIVWKREY-------GS---VNDFAV--DGGRIYLVDQ 302 (394)
T ss_pred h-------hcccccCCCcEEECCEEEEEEcCCeEEEEECCCCCEEEeecC-------CC---ccCcEE--ECCEEEEEcC
Confidence 0 0000000111 256777788899999999999987765431 11 112222 3556777888
Q ss_pred cCeEEEEECCCCceeeeeec-C-CCeEEEEEeeCCCEEEEEeCCCeEEEEEcCCCeEEEEEecCCCCeee-EEECCCCCE
Q 003579 495 HGDIKVWDFKGRDLKSRWEV-G-CSLVKIVYHRVNGLLATVADDLVIRLFDVVALRMVRKFEGHTDRITD-FCFSEDGKW 571 (809)
Q Consensus 495 dg~i~iwd~~~~~~~~~~~~-~-~~i~~~~~s~~~~~la~~~~d~~I~v~d~~~~~~~~~~~~h~~~I~~-l~fspdg~~ 571 (809)
+|.+..+|..+++.+..... . ....+... .+..+++++.+|.++.+|..+++.+.+.+-+...+.+ ..+ .+..
T Consensus 303 ~g~l~ald~~tG~~~W~~~~~~~~~~~sp~v--~~g~l~v~~~~G~l~~ld~~tG~~~~~~~~~~~~~~s~P~~--~~~~ 378 (394)
T PRK11138 303 NDRVYALDTRGGVELWSQSDLLHRLLTAPVL--YNGYLVVGDSEGYLHWINREDGRFVAQQKVDSSGFLSEPVV--ADDK 378 (394)
T ss_pred CCeEEEEECCCCcEEEcccccCCCcccCCEE--ECCEEEEEeCCCEEEEEECCCCCEEEEEEcCCCcceeCCEE--ECCE
Confidence 99999999999987654432 1 11222222 2677888999999999999999988877644333332 222 2346
Q ss_pred EEEEeCCCeEEEEEcC
Q 003579 572 LLSSGMDGSLRIWDVI 587 (809)
Q Consensus 572 l~s~s~D~~I~vwd~~ 587 (809)
|+.++.||.|+.++++
T Consensus 379 l~v~t~~G~l~~~~~~ 394 (394)
T PRK11138 379 LLIQARDGTVYAITRP 394 (394)
T ss_pred EEEEeCCceEEEEeCC
Confidence 7788999999887753
No 290
>KOG3914 consensus WD repeat protein WDR4 [Function unknown]
Probab=98.96 E-value=5.2e-09 Score=103.18 Aligned_cols=171 Identities=17% Similarity=0.218 Sum_probs=122.3
Q ss_pred CCeEEEEEcCCCCEEEEEeCCCcEEEEECCCCceeeeeeCcccccccCccccEEEEEEcCCCCEEEEEeCcCeEEEEECC
Q 003579 425 TAVKACTISACGNFAVLGTAGGWIERFNLQSGISRGSYLDMSERSNYAHNGEVVGVACDSTNTLMISAGYHGDIKVWDFK 504 (809)
Q Consensus 425 ~~v~~v~~s~~g~~l~~g~~~g~i~i~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~l~s~~~dg~i~iwd~~ 504 (809)
.....+..++.+++++++..+....+++.........+.... ........++.+..+........++....+.+|...
T Consensus 63 ~a~~~~~~s~~~~llAv~~~~K~~~~f~~~~~~~~~kl~~~~--~v~~~~~ai~~~~~~~sv~v~dkagD~~~~di~s~~ 140 (390)
T KOG3914|consen 63 LAPALVLTSDSGRLVAVATSSKQRAVFDYRENPKGAKLLDVS--CVPKRPTAISFIREDTSVLVADKAGDVYSFDILSAD 140 (390)
T ss_pred ccccccccCCCceEEEEEeCCCceEEEEEecCCCcceeeeEe--ecccCcceeeeeeccceEEEEeecCCceeeeeeccc
Confidence 345566778899999999999988777775544322111000 001122233333333333333344555667777777
Q ss_pred CCceeeeeecCCCeEEEEEeeCCCEEEEEeCCCeEEEEEcCCCeEEEEE-ecCCCCeeeEEECCCCCEEEEEeCCCeEEE
Q 003579 505 GRDLKSRWEVGCSLVKIVYHRVNGLLATVADDLVIRLFDVVALRMVRKF-EGHTDRITDFCFSEDGKWLLSSGMDGSLRI 583 (809)
Q Consensus 505 ~~~~~~~~~~~~~i~~~~~s~~~~~la~~~~d~~I~v~d~~~~~~~~~~-~~h~~~I~~l~fspdg~~l~s~s~D~~I~v 583 (809)
.+.....+.+-+.++.++++||++.++++..|..|||-.....-.+..| -||+.-|..++.-++ +.|+++|.|++||+
T Consensus 141 ~~~~~~~lGhvSml~dVavS~D~~~IitaDRDEkIRvs~ypa~f~IesfclGH~eFVS~isl~~~-~~LlS~sGD~tlr~ 219 (390)
T KOG3914|consen 141 SGRCEPILGHVSMLLDVAVSPDDQFIITADRDEKIRVSRYPATFVIESFCLGHKEFVSTISLTDN-YLLLSGSGDKTLRL 219 (390)
T ss_pred ccCcchhhhhhhhhheeeecCCCCEEEEecCCceEEEEecCcccchhhhccccHhheeeeeeccC-ceeeecCCCCcEEE
Confidence 6777777777799999999999999999999999999887766555554 479999999999865 56899999999999
Q ss_pred EEcCCccEEEEeeeC
Q 003579 584 WDVILARQIDAIHVD 598 (809)
Q Consensus 584 wd~~~~~~i~~~~~~ 598 (809)
||+.+|++++++...
T Consensus 220 Wd~~sgk~L~t~dl~ 234 (390)
T KOG3914|consen 220 WDITSGKLLDTCDLS 234 (390)
T ss_pred EecccCCcccccchh
Confidence 999999999877643
No 291
>KOG3914 consensus WD repeat protein WDR4 [Function unknown]
Probab=98.95 E-value=2.5e-08 Score=98.52 Aligned_cols=171 Identities=13% Similarity=0.194 Sum_probs=123.5
Q ss_pred ceEEEEEecCCCEEEEEcCCCcEEEEEeeCCCCCceeEEeccCCCCCCeeEEEecCCCEEEEEECCCCEEEEEeeecccc
Q 003579 270 AIISLHFFANEPVLMSASADNSIKMWIFDTTDGDPRLLRFRSGHSAPPLCIRFYANGRHILSAGQDRAFRLFSVIQDQQS 349 (809)
Q Consensus 270 ~V~~l~~~~~~~~l~s~s~d~~i~vw~~~~~~~~~~~~~~~~~h~~~v~~i~~~~~~~~l~s~~~dg~i~~wd~~~~~~~ 349 (809)
....+..++++++++.+..+....+++++......+++..... ....+.+.|..+......+..-|.+..+|+-....
T Consensus 64 a~~~~~~s~~~~llAv~~~~K~~~~f~~~~~~~~~kl~~~~~v-~~~~~ai~~~~~~~sv~v~dkagD~~~~di~s~~~- 141 (390)
T KOG3914|consen 64 APALVLTSDSGRLVAVATSSKQRAVFDYRENPKGAKLLDVSCV-PKRPTAISFIREDTSVLVADKAGDVYSFDILSADS- 141 (390)
T ss_pred cccccccCCCceEEEEEeCCCceEEEEEecCCCcceeeeEeec-ccCcceeeeeeccceEEEEeecCCceeeeeecccc-
Confidence 3445566788888998888888888888776543344443322 33345666666555555554444444444322110
Q ss_pred eecchhhHHHHHhhccchhhhhccCceeEEeeccccccccceeEEeecCCceEEEEEeeeeeecceeeecCCCCCCCeEE
Q 003579 350 RELSQRHVAKRARKLKMKEEELKLKPVIAFDCAEIRERDWCNVVTCHMDTAQAYVWRLQNFVLGEHILRPCPENPTAVKA 429 (809)
Q Consensus 350 ~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~v~~ 429 (809)
....+..+|-+.++.
T Consensus 142 -----------------------------------------------------------------~~~~~~lGhvSml~d 156 (390)
T KOG3914|consen 142 -----------------------------------------------------------------GRCEPILGHVSMLLD 156 (390)
T ss_pred -----------------------------------------------------------------cCcchhhhhhhhhhe
Confidence 111223356689999
Q ss_pred EEEcCCCCEEEEEeCCCcEEEEECCCCceeeeeeCcccccccCccccEEEEEEcCCCCEEEEEeCcCeEEEEECCCCcee
Q 003579 430 CTISACGNFAVLGTAGGWIERFNLQSGISRGSYLDMSERSNYAHNGEVVGVACDSTNTLMISAGYHGDIKVWDFKGRDLK 509 (809)
Q Consensus 430 v~~s~~g~~l~~g~~~g~i~i~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~l~s~~~dg~i~iwd~~~~~~~ 509 (809)
++++||+++++++..|+.|++-.......+..+. -+|..-|..+++-++ +.|+++|.|++|++||+.+|+.+
T Consensus 157 VavS~D~~~IitaDRDEkIRvs~ypa~f~Iesfc-------lGH~eFVS~isl~~~-~~LlS~sGD~tlr~Wd~~sgk~L 228 (390)
T KOG3914|consen 157 VAVSPDDQFIITADRDEKIRVSRYPATFVIESFC-------LGHKEFVSTISLTDN-YLLLSGSGDKTLRLWDITSGKLL 228 (390)
T ss_pred eeecCCCCEEEEecCCceEEEEecCcccchhhhc-------cccHhheeeeeeccC-ceeeecCCCCcEEEEecccCCcc
Confidence 9999999999999999999999988887777776 389999999999754 56999999999999999999999
Q ss_pred eeeecC
Q 003579 510 SRWEVG 515 (809)
Q Consensus 510 ~~~~~~ 515 (809)
.++...
T Consensus 229 ~t~dl~ 234 (390)
T KOG3914|consen 229 DTCDLS 234 (390)
T ss_pred cccchh
Confidence 877654
No 292
>KOG4190 consensus Uncharacterized conserved protein [Function unknown]
Probab=98.94 E-value=5.1e-09 Score=106.38 Aligned_cols=288 Identities=14% Similarity=0.209 Sum_probs=179.2
Q ss_pred EEEEeccCCCcEEEEEEecCCCCEEEEEcCCCcEEEEECCCc-------eeeeeeecccccceEEEEEecCCCEEEEEcC
Q 003579 216 LVTFTHSMRGAVTALAFSSDGQPLLASGASSGVISIWNLEKR-------RLQSVIREAHDNAIISLHFFANEPVLMSASA 288 (809)
Q Consensus 216 ~~~~~~~~~~~V~~l~fs~dg~~~lasg~~dg~I~iwdl~~~-------~~~~~~~~~h~~~V~~l~~~~~~~~l~s~s~ 288 (809)
+..+.+| ...|..++-..+.+ -+++++.|.+|++|.++.. .+..+.. +|..+|.++.|..+.+.++++
T Consensus 728 L~nf~GH-~~~iRai~AidNEN-SFiSASkDKTVKLWSik~EgD~~~tsaCQfTY~-aHkk~i~~igfL~~lr~i~Sc-- 802 (1034)
T KOG4190|consen 728 LCNFTGH-QEKIRAIAAIDNEN-SFISASKDKTVKLWSIKPEGDEIGTSACQFTYQ-AHKKPIHDIGFLADLRSIASC-- 802 (1034)
T ss_pred eecccCc-HHHhHHHHhccccc-ceeeccCCceEEEEEeccccCccccceeeeEhh-hccCcccceeeeeccceeeec--
Confidence 3444444 67777776655554 6889999999999998642 3556666 899999999999998888775
Q ss_pred CCcEEEEEeeCCCCCceeEEeccCCCCCCeeEEEec--CCCEEEE-EECCCCEEEEEeeecccceecchhhHHHHHhhcc
Q 003579 289 DNSIKMWIFDTTDGDPRLLRFRSGHSAPPLCIRFYA--NGRHILS-AGQDRAFRLFSVIQDQQSRELSQRHVAKRARKLK 365 (809)
Q Consensus 289 d~~i~vw~~~~~~~~~~~~~~~~~h~~~v~~i~~~~--~~~~l~s-~~~dg~i~~wd~~~~~~~~~~~~~~~~~~~~~~~ 365 (809)
|+.|.+||--.+....+.... ..| +.+..+...+ +...++. |+...+++++|.+...-..++..
T Consensus 803 D~giHlWDPFigr~Laq~~da-pk~-~a~~~ikcl~nv~~~iliAgcsaeSTVKl~DaRsce~~~E~kV----------- 869 (1034)
T KOG4190|consen 803 DGGIHLWDPFIGRLLAQMEDA-PKE-GAGGNIKCLENVDRHILIAGCSAESTVKLFDARSCEWTCELKV----------- 869 (1034)
T ss_pred cCcceeecccccchhHhhhcC-ccc-CCCceeEecccCcchheeeeccchhhheeeecccccceeeEEe-----------
Confidence 789999975443211111111 112 2233333333 3333333 46788999999876654443211
Q ss_pred chhhhhccCceeEEeeccccccccceeEEeecCCceEEEEEeeeeeecceeeecCCCCCCCeEEEEEcCCCCEEEEEeCC
Q 003579 366 MKEEELKLKPVIAFDCAEIRERDWCNVVTCHMDTAQAYVWRLQNFVLGEHILRPCPENPTAVKACTISACGNFAVLGTAG 445 (809)
Q Consensus 366 ~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~v~~v~~s~~g~~l~~g~~~ 445 (809)
....+....++++++.+.|+++++|-++
T Consensus 870 ----------------------------------------------------cna~~Pna~~R~iaVa~~GN~lAa~LSn 897 (1034)
T KOG4190|consen 870 ----------------------------------------------------CNAPGPNALTRAIAVADKGNKLAAALSN 897 (1034)
T ss_pred ----------------------------------------------------ccCCCCchheeEEEeccCcchhhHHhcC
Confidence 1111233678899999999999999999
Q ss_pred CcEEEEECCCCceeeeeeCcccccccCccccEEEEEEcCCCCEEEEEeCcCeEEE-EECCCCceeeeeecCCCeEEEEEe
Q 003579 446 GWIERFNLQSGISRGSYLDMSERSNYAHNGEVVGVACDSTNTLMISAGYHGDIKV-WDFKGRDLKSRWEVGCSLVKIVYH 524 (809)
Q Consensus 446 g~i~i~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~l~s~~~dg~i~i-wd~~~~~~~~~~~~~~~i~~~~~s 524 (809)
|.|.+.|.++|..+..+. ...-....++ .|..+.++....|.++.+ |....+....+.+........ ..
T Consensus 898 Gci~~LDaR~G~vINswr--------pmecdllqla-apsdq~L~~saldHslaVnWhaldgimh~q~kpppepahf-lq 967 (1034)
T KOG4190|consen 898 GCIAILDARNGKVINSWR--------PMECDLLQLA-APSDQALAQSALDHSLAVNWHALDGIMHLQDKPPPEPAHF-LQ 967 (1034)
T ss_pred CcEEEEecCCCceeccCC--------cccchhhhhc-CchhHHHHhhcccceeEeeehhcCCeeeeccCCCCcchhh-hh
Confidence 999999999999887664 2222333333 355677888888888888 877666554444322111110 11
Q ss_pred eCCCEEEEEeCCCeEEEEEcCC----CeEEEEEe--cCCCCeeeEEECCCCCEEEEEeCCCeEEE
Q 003579 525 RVNGLLATVADDLVIRLFDVVA----LRMVRKFE--GHTDRITDFCFSEDGKWLLSSGMDGSLRI 583 (809)
Q Consensus 525 ~~~~~la~~~~d~~I~v~d~~~----~~~~~~~~--~h~~~I~~l~fspdg~~l~s~s~D~~I~v 583 (809)
.-|..++++.....+.||--.. ...+.+++ ...+..++++--|-++-+..|...|.|++
T Consensus 968 svgpSLV~a~~Gn~lgVYad~a~~ha~stitKiR~d~f~G~lTala~LPLN~afLaGne~G~IaL 1032 (1034)
T KOG4190|consen 968 SVGPSLVTAQNGNILGVYADSAELHAESTITKIRPDEFPGTLTALAPLPLNCAFLAGNEHGAIAL 1032 (1034)
T ss_pred ccCceeEEeccCcEEEEEecchhhhhhhhhccccccccCCccceeeeccccchhhccCCCCceee
Confidence 1244556665555666663110 01122222 23466788888887766667888888765
No 293
>KOG0882 consensus Cyclophilin-related peptidyl-prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones]
Probab=98.91 E-value=2.3e-08 Score=99.65 Aligned_cols=254 Identities=16% Similarity=0.229 Sum_probs=179.1
Q ss_pred ccccceEEEEEecCCCEEEEEcCCCcEEEEEeeCCCCCceeEEeccCCCCCCeeEEEecCCCEEEEEEC-CCCEEEEEee
Q 003579 266 AHDNAIISLHFFANEPVLMSASADNSIKMWIFDTTDGDPRLLRFRSGHSAPPLCIRFYANGRHILSAGQ-DRAFRLFSVI 344 (809)
Q Consensus 266 ~h~~~V~~l~~~~~~~~l~s~s~d~~i~vw~~~~~~~~~~~~~~~~~h~~~v~~i~~~~~~~~l~s~~~-dg~i~~wd~~ 344 (809)
-|...|+.+... -.+++++++.||.++.|.-... .....+..+..|...+.+++.+-++..+.|.+. |..++++|+.
T Consensus 7 mhrd~i~hv~~t-ka~fiiqASlDGh~KFWkKs~i-sGvEfVKhFraHL~~I~sl~~S~dg~L~~Sv~d~Dhs~KvfDvE 84 (558)
T KOG0882|consen 7 MHRDVITHVFPT-KAKFIIQASLDGHKKFWKKSRI-SGVEFVKHFRAHLGVILSLAVSYDGWLFRSVEDPDHSVKVFDVE 84 (558)
T ss_pred cccceeeeEeee-hhheEEeeecchhhhhcCCCCc-cceeehhhhHHHHHHHHhhhccccceeEeeccCcccceeEEEee
Confidence 377777776654 3458999999999999943321 222455666788899999999999999999777 9999999987
Q ss_pred ecccceecchhhHHHHHhhccchhhhhccCceeEEeeccccccccceeEEeecCCceEEEEEeeeeeecceeeecCCCCC
Q 003579 345 QDQQSRELSQRHVAKRARKLKMKEEELKLKPVIAFDCAEIRERDWCNVVTCHMDTAQAYVWRLQNFVLGEHILRPCPENP 424 (809)
Q Consensus 345 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~ 424 (809)
+-....-+....+ +
T Consensus 85 n~DminmiKL~~l------------------------------------------------------------------P 98 (558)
T KOG0882|consen 85 NFDMINMIKLVDL------------------------------------------------------------------P 98 (558)
T ss_pred ccchhhhcccccC------------------------------------------------------------------C
Confidence 6433221111000 0
Q ss_pred CCeEEEEEcCCC----CEEEEEeCCCcEEEEECCCCceeeeeeCcccccccCccccEEEEEEcCCCCEEEEEeCcCeEEE
Q 003579 425 TAVKACTISACG----NFAVLGTAGGWIERFNLQSGISRGSYLDMSERSNYAHNGEVVGVACDSTNTLMISAGYHGDIKV 500 (809)
Q Consensus 425 ~~v~~v~~s~~g----~~l~~g~~~g~i~i~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~l~s~~~dg~i~i 500 (809)
+.+. .+...| ...+..-.+|.+.++|-........+. ..-|..+|..+.+.+-+..+++....|.|..
T Consensus 99 g~a~--wv~skGd~~s~IAVs~~~sg~i~VvD~~~d~~q~~~f------kklH~sPV~~i~y~qa~Ds~vSiD~~gmVEy 170 (558)
T KOG0882|consen 99 GFAE--WVTSKGDKISLIAVSLFKSGKIFVVDGFGDFCQDGYF------KKLHFSPVKKIRYNQAGDSAVSIDISGMVEY 170 (558)
T ss_pred CceE--EecCCCCeeeeEEeecccCCCcEEECCcCCcCcccee------cccccCceEEEEeeccccceeeccccceeEe
Confidence 1111 111111 122233456888999876665333332 1479999999999999999999999999999
Q ss_pred EECCC------Cceeeee----------ecCCCeEEEEEeeCCCEEEEEeCCCeEEEEEcCCCeEEEEEec---------
Q 003579 501 WDFKG------RDLKSRW----------EVGCSLVKIVYHRVNGLLATVADDLVIRLFDVVALRMVRKFEG--------- 555 (809)
Q Consensus 501 wd~~~------~~~~~~~----------~~~~~i~~~~~s~~~~~la~~~~d~~I~v~d~~~~~~~~~~~~--------- 555 (809)
|.... .++...+ .......++.|+|++..+++-+.|..|++++..++++++.+..
T Consensus 171 Ws~e~~~qfPr~~l~~~~K~eTdLy~f~K~Kt~pts~Efsp~g~qistl~~DrkVR~F~~KtGklvqeiDE~~t~~~~q~ 250 (558)
T KOG0882|consen 171 WSAEGPFQFPRTNLNFELKHETDLYGFPKAKTEPTSFEFSPDGAQISTLNPDRKVRGFVFKTGKLVQEIDEVLTDAQYQP 250 (558)
T ss_pred ecCCCcccCccccccccccccchhhcccccccCccceEEccccCcccccCcccEEEEEEeccchhhhhhhccchhhhhcc
Confidence 98773 1111111 2236788999999999999999999999999999887665431
Q ss_pred -----------------------CC-CCeeeEEECCCCCEEEEEeCCCeEEEEEcCCccEEEEee
Q 003579 556 -----------------------HT-DRITDFCFSEDGKWLLSSGMDGSLRIWDVILARQIDAIH 596 (809)
Q Consensus 556 -----------------------h~-~~I~~l~fspdg~~l~s~s~D~~I~vwd~~~~~~i~~~~ 596 (809)
|. ..-+.+.|...|++|+.++.=| |+|.++.++.+++.+.
T Consensus 251 ks~y~l~~VelgRRmaverelek~~~~~~~~~~fdes~~flly~t~~g-ikvin~~tn~v~ri~g 314 (558)
T KOG0882|consen 251 KSPYGLMHVELGRRMAVERELEKHGSTVGTNAVFDESGNFLLYGTILG-IKVINLDTNTVVRILG 314 (558)
T ss_pred ccccccceeehhhhhhHHhhHhhhcCcccceeEEcCCCCEEEeeccee-EEEEEeecCeEEEEec
Confidence 21 1245678999999999998877 8999999998887764
No 294
>PF08450 SGL: SMP-30/Gluconolaconase/LRE-like region; InterPro: IPR013658 This family describes a region that is found in proteins expressed by a variety of eukaryotic and prokaryotic species. These proteins include various enzymes, such as senescence marker protein 30 (SMP-30, Q15493 from SWISSPROT), gluconolactonase (Q01578 from SWISSPROT) and luciferin-regenerating enzyme (LRE, Q86DU5 from SWISSPROT). SMP-30 is known to hydrolyse diisopropyl phosphorofluoridate in the liver, and has been noted as having sequence similarity, in the region described in this family, with PON1 (P52430 from SWISSPROT) and LRE. ; PDB: 2GHS_A 2DG0_L 2DG1_D 2DSO_D 3E5Z_A 2IAT_A 2IAV_A 2GVV_A 3HLI_A 2GVU_A ....
Probab=98.90 E-value=3.8e-06 Score=84.20 Aligned_cols=184 Identities=15% Similarity=0.083 Sum_probs=125.2
Q ss_pred eEEEEEc-CCCCEEEEEeCCCcEEEEECCCCceeeeeeCcccccccCccccEEEEEEcCCCCEEEEEeCc--------Ce
Q 003579 427 VKACTIS-ACGNFAVLGTAGGWIERFNLQSGISRGSYLDMSERSNYAHNGEVVGVACDSTNTLMISAGYH--------GD 497 (809)
Q Consensus 427 v~~v~~s-~~g~~l~~g~~~g~i~i~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~l~s~~~d--------g~ 497 (809)
...+++. ++ ..++++...+ +.++|..++.......... ........+.++++++|++.++.... |.
T Consensus 42 ~~G~~~~~~~-g~l~v~~~~~-~~~~d~~~g~~~~~~~~~~---~~~~~~~~ND~~vd~~G~ly~t~~~~~~~~~~~~g~ 116 (246)
T PF08450_consen 42 PNGMAFDRPD-GRLYVADSGG-IAVVDPDTGKVTVLADLPD---GGVPFNRPNDVAVDPDGNLYVTDSGGGGASGIDPGS 116 (246)
T ss_dssp EEEEEEECTT-SEEEEEETTC-EEEEETTTTEEEEEEEEET---TCSCTEEEEEEEE-TTS-EEEEEECCBCTTCGGSEE
T ss_pred CceEEEEccC-CEEEEEEcCc-eEEEecCCCcEEEEeeccC---CCcccCCCceEEEcCCCCEEEEecCCCccccccccc
Confidence 6667777 55 4555555544 5566998886655443100 01145678999999999988776643 56
Q ss_pred EEEEECCCCceeeeeecCCCeEEEEEeeCCCEEE-EEeCCCeEEEEEcCCC-e-E--EEEE---ecCCCCeeeEEECCCC
Q 003579 498 IKVWDFKGRDLKSRWEVGCSLVKIVYHRVNGLLA-TVADDLVIRLFDVVAL-R-M--VRKF---EGHTDRITDFCFSEDG 569 (809)
Q Consensus 498 i~iwd~~~~~~~~~~~~~~~i~~~~~s~~~~~la-~~~~d~~I~v~d~~~~-~-~--~~~~---~~h~~~I~~l~fspdg 569 (809)
|..++.. ++.......-...+.++|+|+++.|. +-+..+.|..+++... . . .+.+ ....+..-.+++..+|
T Consensus 117 v~~~~~~-~~~~~~~~~~~~pNGi~~s~dg~~lyv~ds~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~g~pDG~~vD~~G 195 (246)
T PF08450_consen 117 VYRIDPD-GKVTVVADGLGFPNGIAFSPDGKTLYVADSFNGRIWRFDLDADGGELSNRRVFIDFPGGPGYPDGLAVDSDG 195 (246)
T ss_dssp EEEEETT-SEEEEEEEEESSEEEEEEETTSSEEEEEETTTTEEEEEEEETTTCCEEEEEEEEE-SSSSCEEEEEEEBTTS
T ss_pred eEEECCC-CeEEEEecCcccccceEECCcchheeecccccceeEEEeccccccceeeeeeEEEcCCCCcCCCcceEcCCC
Confidence 7777777 56555555557789999999999776 4566789999998632 1 1 2222 2223347789999999
Q ss_pred CEEEEEeCCCeEEEEEcCCccEEEEeeeC-cceEEEEEc-CCCCeEEEEE
Q 003579 570 KWLLSSGMDGSLRIWDVILARQIDAIHVD-VSITALSLS-PNMDVLATAH 617 (809)
Q Consensus 570 ~~l~s~s~D~~I~vwd~~~~~~i~~~~~~-~~v~~l~~s-pdg~~lat~~ 617 (809)
++.++....+.|.++|.. |+++..+..+ ..+++++|. ++.+.|..++
T Consensus 196 ~l~va~~~~~~I~~~~p~-G~~~~~i~~p~~~~t~~~fgg~~~~~L~vTt 244 (246)
T PF08450_consen 196 NLWVADWGGGRIVVFDPD-GKLLREIELPVPRPTNCAFGGPDGKTLYVTT 244 (246)
T ss_dssp -EEEEEETTTEEEEEETT-SCEEEEEE-SSSSEEEEEEESTTSSEEEEEE
T ss_pred CEEEEEcCCCEEEEECCC-ccEEEEEcCCCCCEEEEEEECCCCCEEEEEe
Confidence 988887788999999966 9999999887 569999994 6766665544
No 295
>KOG0309 consensus Conserved WD40 repeat-containing protein [Function unknown]
Probab=98.90 E-value=1.5e-08 Score=106.74 Aligned_cols=198 Identities=17% Similarity=0.269 Sum_probs=147.0
Q ss_pred ccEEEEeCCCCCCEEEEEeCCCeEEEEeCCCC-ce---EEEEcCCCCCEEEEEEcC--CCCEEEEEeCCCeEEEEEeeC-
Q 003579 140 TPTCIMHPDTYLNKVIVGSQEGSLQLWNISTK-KK---LYEFKGWGSSISSCVSSP--ALDVVAVGCSDGKIHVHNVRY- 212 (809)
Q Consensus 140 ~~~~~~~p~~~~~~l~~~~~dg~i~lwd~~~~-~~---~~~~~~~~~~I~~l~~sp--~~~~la~g~~dg~i~iwd~~~- 212 (809)
...+.++|.+ .-++.++..| +.+.|+... .+ ++.+.. -.|-...|+| ..++-++......-.+|++..
T Consensus 27 ~~a~si~p~g--rdi~lAsr~g-l~i~dld~p~~ppr~l~h~tp--w~vad~qws~h~a~~~wiVsts~qkaiiwnlA~s 101 (1081)
T KOG0309|consen 27 FNAVSINPSG--RDIVLASRQG-LYIIDLDDPFTPPRWLHHITP--WQVADVQWSPHPAKPYWIVSTSNQKAIIWNLAKS 101 (1081)
T ss_pred ccceeecccc--chhhhhhhcC-eEEEeccCCCCCceeeeccCc--chhcceecccCCCCceeEEecCcchhhhhhhhcC
Confidence 3456688888 7799998888 777777543 22 222222 2345556665 456777777777788999863
Q ss_pred -CeEEEEEeccCCCcEEEEEEecCCCCEEEEEcCCCcEEEEECCCce-eeeeeecccccceEEEEEecCCCEEEEEcCCC
Q 003579 213 -DEELVTFTHSMRGAVTALAFSSDGQPLLASGASSGVISIWNLEKRR-LQSVIREAHDNAIISLHFFANEPVLMSASADN 290 (809)
Q Consensus 213 -~~~~~~~~~~~~~~V~~l~fs~dg~~~lasg~~dg~I~iwdl~~~~-~~~~~~~~h~~~V~~l~~~~~~~~l~s~s~d~ 290 (809)
.+.+.-+.++|...|+.+.|.|....++++++.|-.+..||+++.. .+.... .-...-..++|+...+.+...+..+
T Consensus 102 s~~aIef~lhghsraitd~n~~~q~pdVlatcsvdt~vh~wd~rSp~~p~ys~~-~w~s~asqVkwnyk~p~vlasshg~ 180 (1081)
T KOG0309|consen 102 SSNAIEFVLHGHSRAITDINFNPQHPDVLATCSVDTYVHAWDMRSPHRPFYSTS-SWRSAASQVKWNYKDPNVLASSHGN 180 (1081)
T ss_pred CccceEEEEecCccceeccccCCCCCcceeeccccccceeeeccCCCcceeeee-cccccCceeeecccCcchhhhccCC
Confidence 3455555566688999999999998899999999999999998874 344444 4445678899988776666667778
Q ss_pred cEEEEEeeCCCCCceeEEeccCCCCCCeeEEEec-CCCEEEEEECCCCEEEEEeeec
Q 003579 291 SIKMWIFDTTDGDPRLLRFRSGHSAPPLCIRFYA-NGRHILSAGQDRAFRLFSVIQD 346 (809)
Q Consensus 291 ~i~vw~~~~~~~~~~~~~~~~~h~~~v~~i~~~~-~~~~l~s~~~dg~i~~wd~~~~ 346 (809)
.|++||...+. ..+...++|...|+.+.|.. ....+.+++.||+++.||....
T Consensus 181 ~i~vwd~r~gs---~pl~s~K~~vs~vn~~~fnr~~~s~~~s~~~d~tvkfw~y~kS 234 (1081)
T KOG0309|consen 181 DIFVWDLRKGS---TPLCSLKGHVSSVNSIDFNRFKYSEIMSSSNDGTVKFWDYSKS 234 (1081)
T ss_pred ceEEEeccCCC---cceEEecccceeeehHHHhhhhhhhhcccCCCCceeeeccccc
Confidence 89999987664 45667778999999999876 3457889999999999997654
No 296
>KOG4532 consensus WD40-like repeat containing protein [General function prediction only]
Probab=98.89 E-value=3.9e-07 Score=85.02 Aligned_cols=235 Identities=9% Similarity=0.003 Sum_probs=148.2
Q ss_pred eCCEEEEEeCCCcEEEEEcCCCccccceeeeEEcCCccccEE-EEeCCCCCCEEEEEeCCCeEEEEeCCCCceEEEEcCC
Q 003579 102 FGEHILSIDIDGNMFIWAFKGIEENLAPVGHVKLDDKFTPTC-IMHPDTYLNKVIVGSQEGSLQLWNISTKKKLYEFKGW 180 (809)
Q Consensus 102 ~g~~l~s~~~dg~i~vWd~~~~~~~~~~~~~~~~~~~~~~~~-~~~p~~~~~~l~~~~~dg~i~lwd~~~~~~~~~~~~~ 180 (809)
.-.+|+.++..|...+|...+.+..... ...+...+... -..... -.+..++.|.++++.+++.+..-......
T Consensus 83 kc~~la~gG~~g~fd~~~~~tn~~h~~~---cd~snn~v~~~~r~cd~~--~~~~i~sndht~k~~~~~~~s~~~~~h~~ 157 (344)
T KOG4532|consen 83 KCVTLADGGASGQFDLFACNTNDGHLYQ---CDVSNNDVTLVKRYCDLK--FPLNIASNDHTGKTMVVSGDSNKFAVHNQ 157 (344)
T ss_pred cccEEEeccccceeeeecccCcccceee---ecccccchhhhhhhcccc--cceeeccCCcceeEEEEecCcccceeecc
Confidence 3568999989999999999877653211 11111110000 000111 24777788888888887654332222221
Q ss_pred CCCEEEEEEcCCCCEEEEEeCCCeEEEEEeeCCe--EEEEEeccCCCcEEEEEEecCCCCEEEEEcCCCcEEEEECCCce
Q 003579 181 GSSISSCVSSPALDVVAVGCSDGKIHVHNVRYDE--ELVTFTHSMRGAVTALAFSSDGQPLLASGASSGVISIWNLEKRR 258 (809)
Q Consensus 181 ~~~I~~l~~sp~~~~la~g~~dg~i~iwd~~~~~--~~~~~~~~~~~~V~~l~fs~dg~~~lasg~~dg~I~iwdl~~~~ 258 (809)
.-.+.+++++++++++++.+....|..|.+.... .+........+.-.+.+|+.... .+|++..||++.|||++...
T Consensus 158 ~~~~ns~~~snd~~~~~~Vgds~~Vf~y~id~~sey~~~~~~a~t~D~gF~~S~s~~~~-~FAv~~Qdg~~~I~DVR~~~ 236 (344)
T KOG4532|consen 158 NLTQNSLHYSNDPSWGSSVGDSRRVFRYAIDDESEYIENIYEAPTSDHGFYNSFSENDL-QFAVVFQDGTCAIYDVRNMA 236 (344)
T ss_pred ccceeeeEEcCCCceEEEecCCCcceEEEeCCccceeeeeEecccCCCceeeeeccCcc-eEEEEecCCcEEEEEecccc
Confidence 2338899999999999999999999999987543 23323344455667889998887 89999999999999998763
Q ss_pred e----eeeeecccccceEEEEEecCCC--EEEEEcCCCcEEEEEeeCCCCCceeEE---eccCCC-CCCeeEEEecCCCE
Q 003579 259 L----QSVIREAHDNAIISLHFFANEP--VLMSASADNSIKMWIFDTTDGDPRLLR---FRSGHS-APPLCIRFYANGRH 328 (809)
Q Consensus 259 ~----~~~~~~~h~~~V~~l~~~~~~~--~l~s~s~d~~i~vw~~~~~~~~~~~~~---~~~~h~-~~v~~i~~~~~~~~ 328 (809)
. ....+..|.+.+..+.|++.|. +|+..-.-+.+.+-|++....-..++. ....|. ..+....|+.++..
T Consensus 237 tpm~~~sstrp~hnGa~R~c~Fsl~g~lDLLf~sEhfs~~hv~D~R~~~~~q~I~i~~d~~~~~~tq~ifgt~f~~~n~s 316 (344)
T KOG4532|consen 237 TPMAEISSTRPHHNGAFRVCRFSLYGLLDLLFISEHFSRVHVVDTRNYVNHQVIVIPDDVERKHNTQHIFGTNFNNENES 316 (344)
T ss_pred cchhhhcccCCCCCCceEEEEecCCCcceEEEEecCcceEEEEEcccCceeeEEecCccccccccccccccccccCCCcc
Confidence 2 2223346999999999998775 444444456677776655432211111 111233 33777778777766
Q ss_pred EEEEECCCCEEEEEe
Q 003579 329 ILSAGQDRAFRLFSV 343 (809)
Q Consensus 329 l~s~~~dg~i~~wd~ 343 (809)
+.+...+. +.-|++
T Consensus 317 ~~v~~e~~-~ae~ni 330 (344)
T KOG4532|consen 317 NDVKNELQ-GAEYNI 330 (344)
T ss_pred cccccchh-hheeec
Confidence 66665543 344444
No 297
>COG5170 CDC55 Serine/threonine protein phosphatase 2A, regulatory subunit [Signal transduction mechanisms]
Probab=98.89 E-value=1.1e-07 Score=90.35 Aligned_cols=335 Identities=14% Similarity=0.192 Sum_probs=200.3
Q ss_pred CCCEEEEEEcCCCCEEEEEeCCCeEEEEEeeCCe-----EEEEEeccC-----------CCcEEEEEEecCC-CCEEEEE
Q 003579 181 GSSISSCVSSPALDVVAVGCSDGKIHVHNVRYDE-----ELVTFTHSM-----------RGAVTALAFSSDG-QPLLASG 243 (809)
Q Consensus 181 ~~~I~~l~~sp~~~~la~g~~dg~i~iwd~~~~~-----~~~~~~~~~-----------~~~V~~l~fs~dg-~~~lasg 243 (809)
...|+++.|...|.|||+|...|+|.+|.-.... -...|..+. ...|..+.|..++ +..+...
T Consensus 26 ad~ItaVefd~tg~YlatGDkgGRVvlfer~~s~~ceykf~teFQshe~EFDYLkSleieEKin~I~w~~~t~r~hFLls 105 (460)
T COG5170 26 ADKITAVEFDETGLYLATGDKGGRVVLFEREKSYGCEYKFFTEFQSHELEFDYLKSLEIEEKINAIEWFDDTGRNHFLLS 105 (460)
T ss_pred cceeeEEEeccccceEeecCCCceEEEeecccccccchhhhhhhcccccchhhhhhccHHHHhhheeeecCCCcceEEEe
Confidence 5679999999999999999999999999765332 111222221 2467888887553 3455556
Q ss_pred cCCCcEEEEECCCcee------------------------------------------eeeeecccccceEEEEEecCCC
Q 003579 244 ASSGVISIWNLEKRRL------------------------------------------QSVIREAHDNAIISLHFFANEP 281 (809)
Q Consensus 244 ~~dg~I~iwdl~~~~~------------------------------------------~~~~~~~h~~~V~~l~~~~~~~ 281 (809)
+.|.+|++|.+....+ .+....+|.--|.++.|..|..
T Consensus 106 tNdktiKlWKiyeknlk~va~nnls~~~~~~~~g~~~s~~~l~lprls~hd~iiaa~p~rvyaNaH~yhiNSiS~NsD~e 185 (460)
T COG5170 106 TNDKTIKLWKIYEKNLKVVAENNLSDSFHSPMGGPLTSTKELLLPRLSEHDEIIAAKPCRVYANAHPYHINSISFNSDKE 185 (460)
T ss_pred cCCceeeeeeeecccchhhhccccccccccccCCCcCCHHHhhcccccccceEEEeccceeccccceeEeeeeeecCchh
Confidence 7799999998754310 0111136778889999999988
Q ss_pred EEEEEcCCCcEEEEEeeCCCCCceeEEeccCC-----CCCCeeEEEecC-CCEEEEEECCCCEEEEEeeecccceecchh
Q 003579 282 VLMSASADNSIKMWIFDTTDGDPRLLRFRSGH-----SAPPLCIRFYAN-GRHILSAGQDRAFRLFSVIQDQQSRELSQR 355 (809)
Q Consensus 282 ~l~s~s~d~~i~vw~~~~~~~~~~~~~~~~~h-----~~~v~~i~~~~~-~~~l~s~~~dg~i~~wd~~~~~~~~~~~~~ 355 (809)
.++++. |=.|.+|+++..++...++... .| ..-|++..|+|. ...+...+..|.|++-|+++......-.
T Consensus 186 t~lSaD-dLrINLWnl~i~D~sFnIVDiK-P~nmeeLteVItSaeFhp~~cn~fmYSsSkG~Ikl~DlRq~alcdn~~-- 261 (460)
T COG5170 186 TLLSAD-DLRINLWNLEIIDGSFNIVDIK-PHNMEELTEVITSAEFHPEMCNVFMYSSSKGEIKLNDLRQSALCDNSK-- 261 (460)
T ss_pred eeeecc-ceeeeeccccccCCceEEEecc-CccHHHHHHHHhhcccCHhHcceEEEecCCCcEEehhhhhhhhccCch--
Confidence 888764 6789999988877655544332 33 235778888883 4456667778899998886432110000
Q ss_pred hHHHHHhhccchhhhhccCceeEEeeccccccccceeEEeecCCceEEEEEeeeeeecceeeecCCCCCCCeEEEEEcCC
Q 003579 356 HVAKRARKLKMKEEELKLKPVIAFDCAEIRERDWCNVVTCHMDTAQAYVWRLQNFVLGEHILRPCPENPTAVKACTISAC 435 (809)
Q Consensus 356 ~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~v~~v~~s~~ 435 (809)
..-...
T Consensus 262 ----------------------------------------------------------------------klfe~~---- 267 (460)
T COG5170 262 ----------------------------------------------------------------------KLFELT---- 267 (460)
T ss_pred ----------------------------------------------------------------------hhhhhc----
Confidence 000000
Q ss_pred CCEEEEEeCCCcEEEEECCCCceeeeeeCcccccccCccccEEEEEEcCCCCEEEEEeCcCeEEEEECCCC-ceeeeeec
Q 003579 436 GNFAVLGTAGGWIERFNLQSGISRGSYLDMSERSNYAHNGEVVGVACDSTNTLMISAGYHGDIKVWDFKGR-DLKSRWEV 514 (809)
Q Consensus 436 g~~l~~g~~~g~i~i~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~l~s~~~dg~i~iwd~~~~-~~~~~~~~ 514 (809)
.|| ....- ..+-...|..+.|+++|+++++-.. -+|++||.+.. .++.++..
T Consensus 268 --------~D~----------v~~~f--------f~eivsSISD~kFs~ngryIlsRdy-ltvkiwDvnm~k~pikTi~~ 320 (460)
T COG5170 268 --------IDG----------VDVDF--------FEEIVSSISDFKFSDNGRYILSRDY-LTVKIWDVNMAKNPIKTIPM 320 (460)
T ss_pred --------cCc----------ccchh--------HHHHhhhhcceEEcCCCcEEEEecc-ceEEEEecccccCCceeech
Confidence 000 00000 0144567889999999999988766 68999998753 45555533
Q ss_pred C-------------C---CeEEEEEeeCCCEEEEEeCCCeEEEEEcCCC-----eEEEEEecCCC----------CeeeE
Q 003579 515 G-------------C---SLVKIVYHRVNGLLATVADDLVIRLFDVVAL-----RMVRKFEGHTD----------RITDF 563 (809)
Q Consensus 515 ~-------------~---~i~~~~~s~~~~~la~~~~d~~I~v~d~~~~-----~~~~~~~~h~~----------~I~~l 563 (809)
+ . .--.+.|+-|.+.+.+|+.....-+|-..+. -.+..+..|.. .|...
T Consensus 321 h~~l~~~l~d~YEnDaifdkFeisfSgd~~~v~sgsy~NNfgiyp~~ssg~~D~g~vv~~ad~~a~~~~~k~~~nnv~kk 400 (460)
T COG5170 321 HCDLMDELNDVYENDAIFDKFEISFSGDDKHVLSGSYSNNFGIYPTDSSGFKDVGHVVNLADGSAEDFKVKCETNNVEKK 400 (460)
T ss_pred HHHHHHHHHhhhhccceeeeEEEEecCCcccccccccccceeeeccccCCCCcceEEEecccCCcccccCcccccccccc
Confidence 2 1 1234678888888999888777777754321 12222222221 11111
Q ss_pred EE-CCCCCEEEEEeCCCeEEEEEcCCccEEEEeeeCcceEEEEEcCCCCeEEEEEeCCCeEEEee
Q 003579 564 CF-SEDGKWLLSSGMDGSLRIWDVILARQIDAIHVDVSITALSLSPNMDVLATAHVDQNGVYLWV 627 (809)
Q Consensus 564 ~f-spdg~~l~s~s~D~~I~vwd~~~~~~i~~~~~~~~v~~l~~spdg~~lat~~~d~~~i~lW~ 627 (809)
.- ..+....++.+.+|.+..-.=+ +.+.....|....|+|-.+-+|.+..+. ++++.
T Consensus 401 d~~kn~~~rs~ss~a~g~~~~~eD~-----d~ld~~k~ilh~sWhp~e~svaiaatnn--lfvfs 458 (460)
T COG5170 401 DKLKNNDWRSVSSSADGFVVACEDP-----DNLDLLKKILHRSWHPFEDSVAIAATNN--LFVFS 458 (460)
T ss_pred cccccccccccccccCcceeeccCc-----chhHHHHHHHhhccCCcccceeeeecCc--eEEEe
Confidence 11 1111224444445544332111 2223333466778999888888887665 66654
No 298
>PF15492 Nbas_N: Neuroblastoma-amplified sequence, N terminal
Probab=98.88 E-value=2.2e-06 Score=81.64 Aligned_cols=146 Identities=19% Similarity=0.167 Sum_probs=96.8
Q ss_pred EEEcCCCCEEEEEeCCCeEEEEEeeCCe--EEEE--EeccCCCcEEEEEEecCCCCEEEEEcCCCcEEEEECCCceeeee
Q 003579 187 CVSSPALDVVAVGCSDGKIHVHNVRYDE--ELVT--FTHSMRGAVTALAFSSDGQPLLASGASSGVISIWNLEKRRLQSV 262 (809)
Q Consensus 187 l~~sp~~~~la~g~~dg~i~iwd~~~~~--~~~~--~~~~~~~~V~~l~fs~dg~~~lasg~~dg~I~iwdl~~~~~~~~ 262 (809)
++.+++|++||+.- |..|.|-..+.+- .+.+ +..+..-.=.-++||||+. +||.+...|+|+++|+.... +..
T Consensus 3 ~~~~~~Gk~lAi~q-d~~iEiRsa~Ddf~si~~kcqVpkD~~PQWRkl~WSpD~t-lLa~a~S~G~i~vfdl~g~~-lf~ 79 (282)
T PF15492_consen 3 LALSSDGKLLAILQ-DQCIEIRSAKDDFSSIIGKCQVPKDPNPQWRKLAWSPDCT-LLAYAESTGTIRVFDLMGSE-LFV 79 (282)
T ss_pred eeecCCCcEEEEEe-ccEEEEEeccCCchheeEEEecCCCCCchheEEEECCCCc-EEEEEcCCCeEEEEecccce-eEE
Confidence 56788999888764 5677776655431 2222 2233234568899999999 99999999999999997643 334
Q ss_pred eeccc------ccceEEEEEecCC------CEEEEEcCCCcEEEEEeeCCC-CCceeEEe--c-cCCCCCCeeEEEecCC
Q 003579 263 IREAH------DNAIISLHFFANE------PVLMSASADNSIKMWIFDTTD-GDPRLLRF--R-SGHSAPPLCIRFYANG 326 (809)
Q Consensus 263 ~~~~h------~~~V~~l~~~~~~------~~l~s~s~d~~i~vw~~~~~~-~~~~~~~~--~-~~h~~~v~~i~~~~~~ 326 (809)
+..++ ...|.++.|.+.. ..|+....+|.++-|-+...+ ...+.... + ..+...|.++.|+|.-
T Consensus 80 I~p~~~~~~d~~~Aiagl~Fl~~~~s~~ws~ELlvi~Y~G~L~Sy~vs~gt~q~y~e~hsfsf~~~yp~Gi~~~vy~p~h 159 (282)
T PF15492_consen 80 IPPAMSFPGDLSDAIAGLIFLEYKKSAQWSYELLVINYRGQLRSYLVSVGTNQGYQENHSFSFSSHYPHGINSAVYHPKH 159 (282)
T ss_pred cCcccccCCccccceeeeEeeccccccccceeEEEEeccceeeeEEEEcccCCcceeeEEEEecccCCCceeEEEEcCCC
Confidence 43233 3567778886532 156666778888888775431 12222222 2 2346789999999998
Q ss_pred CEEEEEECC
Q 003579 327 RHILSAGQD 335 (809)
Q Consensus 327 ~~l~s~~~d 335 (809)
+.|+.||..
T Consensus 160 ~LLlVgG~~ 168 (282)
T PF15492_consen 160 RLLLVGGCE 168 (282)
T ss_pred CEEEEeccC
Confidence 888887753
No 299
>PRK04043 tolB translocation protein TolB; Provisional
Probab=98.88 E-value=1.5e-06 Score=93.22 Aligned_cols=164 Identities=12% Similarity=0.077 Sum_probs=104.4
Q ss_pred CeEEEEeCCCCceEEEEcCCCCCEEEEEEcCCCCE-EEEEeC---CCeEEEEEeeCCeEEEEEeccCCCcEEEEEEecCC
Q 003579 161 GSLQLWNISTKKKLYEFKGWGSSISSCVSSPALDV-VAVGCS---DGKIHVHNVRYDEELVTFTHSMRGAVTALAFSSDG 236 (809)
Q Consensus 161 g~i~lwd~~~~~~~~~~~~~~~~I~~l~~sp~~~~-la~g~~---dg~i~iwd~~~~~~~~~~~~~~~~~V~~l~fs~dg 236 (809)
..|.+-|..... .+.+.... .+....|+|||+. ++..+. +..|.++|+.+++...... . .+......|+|||
T Consensus 169 ~~l~~~d~dg~~-~~~~~~~~-~~~~p~wSpDG~~~i~y~s~~~~~~~Iyv~dl~tg~~~~lt~-~-~g~~~~~~~SPDG 244 (419)
T PRK04043 169 SNIVLADYTLTY-QKVIVKGG-LNIFPKWANKEQTAFYYTSYGERKPTLYKYNLYTGKKEKIAS-S-QGMLVVSDVSKDG 244 (419)
T ss_pred ceEEEECCCCCc-eeEEccCC-CeEeEEECCCCCcEEEEEEccCCCCEEEEEECCCCcEEEEec-C-CCcEEeeEECCCC
Confidence 356666764443 33343333 7889999999984 664433 3569999998887554433 2 5667788999999
Q ss_pred CCEEEEEcCC--CcEEEEECCCceeeeeeecccccceEEEEEecCCCEEEEEc-CCCcEEEEEeeCCCCCceeEEeccCC
Q 003579 237 QPLLASGASS--GVISIWNLEKRRLQSVIREAHDNAIISLHFFANEPVLMSAS-ADNSIKMWIFDTTDGDPRLLRFRSGH 313 (809)
Q Consensus 237 ~~~lasg~~d--g~I~iwdl~~~~~~~~~~~~h~~~V~~l~~~~~~~~l~s~s-~d~~i~vw~~~~~~~~~~~~~~~~~h 313 (809)
+.++++.+.+ ..|.++|+.+++... +. .+........|+|||+.|+..+ ..+.-.+|.++..++..+.+.. .+.
T Consensus 245 ~~la~~~~~~g~~~Iy~~dl~~g~~~~-LT-~~~~~d~~p~~SPDG~~I~F~Sdr~g~~~Iy~~dl~~g~~~rlt~-~g~ 321 (419)
T PRK04043 245 SKLLLTMAPKGQPDIYLYDTNTKTLTQ-IT-NYPGIDVNGNFVEDDKRIVFVSDRLGYPNIFMKKLNSGSVEQVVF-HGK 321 (419)
T ss_pred CEEEEEEccCCCcEEEEEECCCCcEEE-cc-cCCCccCccEECCCCCEEEEEECCCCCceEEEEECCCCCeEeCcc-CCC
Confidence 8566665544 568888988876443 33 2333344568999998666555 4565566666665544422221 122
Q ss_pred CCCCeeEEEecCCCEEEEEECC
Q 003579 314 SAPPLCIRFYANGRHILSAGQD 335 (809)
Q Consensus 314 ~~~v~~i~~~~~~~~l~s~~~d 335 (809)
. ...|+|||+.|+..+..
T Consensus 322 ~----~~~~SPDG~~Ia~~~~~ 339 (419)
T PRK04043 322 N----NSSVSTYKNYIVYSSRE 339 (419)
T ss_pred c----CceECCCCCEEEEEEcC
Confidence 1 24899999998876643
No 300
>KOG4649 consensus PQQ (pyrrolo-quinoline quinone) repeat protein [Secondary metabolites biosynthesis, transport and catabolism]
Probab=98.87 E-value=1.6e-05 Score=74.20 Aligned_cols=109 Identities=18% Similarity=0.220 Sum_probs=84.2
Q ss_pred CEEEEEeCCCeEEEEeCCCCceEEEEcCCCCCEEEEEEcCCCCEEEEEeCCCeEEEEEeeCCeEEEEEeccCCCcEEEEE
Q 003579 152 NKVIVGSQEGSLQLWNISTKKKLYEFKGWGSSISSCVSSPALDVVAVGCSDGKIHVHNVRYDEELVTFTHSMRGAVTALA 231 (809)
Q Consensus 152 ~~l~~~~~dg~i~lwd~~~~~~~~~~~~~~~~I~~l~~sp~~~~la~g~~dg~i~iwd~~~~~~~~~~~~~~~~~V~~l~ 231 (809)
..++.|+..+.+.-.|..+|+++.+-.- ...|.+-+.- -|++++.|+..|.+.+.+.++|.....+..-..-.+ ...
T Consensus 24 T~v~igSHs~~~~avd~~sG~~~We~il-g~RiE~sa~v-vgdfVV~GCy~g~lYfl~~~tGs~~w~f~~~~~vk~-~a~ 100 (354)
T KOG4649|consen 24 TLVVIGSHSGIVIAVDPQSGNLIWEAIL-GVRIECSAIV-VGDFVVLGCYSGGLYFLCVKTGSQIWNFVILETVKV-RAQ 100 (354)
T ss_pred eEEEEecCCceEEEecCCCCcEEeehhh-CceeeeeeEE-ECCEEEEEEccCcEEEEEecchhheeeeeehhhhcc-ceE
Confidence 6789999999999999999999876432 2334333322 578899999999999999999988887775312222 233
Q ss_pred EecCCCCEEEEEcCCCcEEEEECCCceeeeeee
Q 003579 232 FSSDGQPLLASGASSGVISIWNLEKRRLQSVIR 264 (809)
Q Consensus 232 fs~dg~~~lasg~~dg~I~iwdl~~~~~~~~~~ 264 (809)
..+++. ++..|+.|++.+..|..+...+...+
T Consensus 101 ~d~~~g-lIycgshd~~~yalD~~~~~cVyksk 132 (354)
T KOG4649|consen 101 CDFDGG-LIYCGSHDGNFYALDPKTYGCVYKSK 132 (354)
T ss_pred EcCCCc-eEEEecCCCcEEEecccccceEEecc
Confidence 456777 89999999999999999998888766
No 301
>PF15492 Nbas_N: Neuroblastoma-amplified sequence, N terminal
Probab=98.84 E-value=6.1e-06 Score=78.76 Aligned_cols=43 Identities=28% Similarity=0.449 Sum_probs=38.1
Q ss_pred CCCCeeeEEECCCCCEEEEEeCCCeEEEEEcCCccEEEEeeeC
Q 003579 556 HTDRITDFCFSEDGKWLLSSGMDGSLRIWDVILARQIDAIHVD 598 (809)
Q Consensus 556 h~~~I~~l~fspdg~~l~s~s~D~~I~vwd~~~~~~i~~~~~~ 598 (809)
....|..|..||||+.||+...+|.|.+|++++-++...+..+
T Consensus 228 ~~d~i~kmSlSPdg~~La~ih~sG~lsLW~iPsL~~~~~W~~~ 270 (282)
T PF15492_consen 228 EQDGIFKMSLSPDGSLLACIHFSGSLSLWEIPSLRLQRSWKQD 270 (282)
T ss_pred CCCceEEEEECCCCCEEEEEEcCCeEEEEecCcchhhcccchh
Confidence 4577999999999999999999999999999998887776544
No 302
>KOG4714 consensus Nucleoporin [Nuclear structure]
Probab=98.83 E-value=5.3e-08 Score=90.31 Aligned_cols=187 Identities=12% Similarity=0.165 Sum_probs=114.6
Q ss_pred EEEEEeCCCeEEEEeCCCCce------------EEEEcCCCCCEEEEEEcCCCCEEEEEeCCCeEEEEEeeCCeEEEE-E
Q 003579 153 KVIVGSQEGSLQLWNISTKKK------------LYEFKGWGSSISSCVSSPALDVVAVGCSDGKIHVHNVRYDEELVT-F 219 (809)
Q Consensus 153 ~l~~~~~dg~i~lwd~~~~~~------------~~~~~~~~~~I~~l~~sp~~~~la~g~~dg~i~iwd~~~~~~~~~-~ 219 (809)
.++++..++.+...+.-++.+ .+.+..|.++-.+-+.+--+..+++++.||.+.+++.+....+.. +
T Consensus 49 ~lf~~e~~~~~ss~g~~r~~~~~~~~rt~~i~~~~~~a~~sep~p~~~~s~~~t~V~~~~~dg~~~v~s~~~~~~~~~~i 128 (319)
T KOG4714|consen 49 ILFTGETSSQIISLGKGRGRCISLWERDDGIDPFKVLAKNSEIDPNDACTMTDNRVCIGYADGSLAVFSTDKDLALMSRI 128 (319)
T ss_pred eeecccchhheeeeccceEEEechhhcccCcCceeeeeccCCCCCcccccccCCceEecCCCceEEEEechHHHhhhhhc
Confidence 355555555555554433332 333333433333333344466899999999999999875322211 1
Q ss_pred eccCCCcEEEEEEecCCCCEEEEEc-----CCCcEEEEECCCceeeeeeecccccceEEEEEecCCC-EEEEEcCCCcEE
Q 003579 220 THSMRGAVTALAFSSDGQPLLASGA-----SSGVISIWNLEKRRLQSVIREAHDNAIISLHFFANEP-VLMSASADNSIK 293 (809)
Q Consensus 220 ~~~~~~~V~~l~fs~dg~~~lasg~-----~dg~I~iwdl~~~~~~~~~~~~h~~~V~~l~~~~~~~-~l~s~s~d~~i~ 293 (809)
...+. .-.+.+....+. ++.++. .-+..+.|+++..+.+..-. .....|.+++-.|.++ ++++|+.||.+.
T Consensus 129 ~~~~~-~~as~~~~~~~~-~i~s~~~g~~n~~d~~~a~~~~p~~t~~~~~-~~~~~v~~l~~hp~qq~~v~cgt~dg~~~ 205 (319)
T KOG4714|consen 129 PSIHS-GSASRKICRHGN-SILSGGCGNWNAQDNFYANTLDPIKTLIPSK-KALDAVTALCSHPAQQHLVCCGTDDGIVG 205 (319)
T ss_pred ccccc-cccccceeeccc-EEecCCcceEeeccceeeecccccccccccc-cccccchhhhCCcccccEEEEecCCCeEE
Confidence 11111 112222333444 333322 23456667665543332222 1223489999888654 677788899999
Q ss_pred EEEeeCCCCCceeEEeccCCCCCCeeEEEec-CCCEEEEEECCCCEEEEEeee
Q 003579 294 MWIFDTTDGDPRLLRFRSGHSAPPLCIRFYA-NGRHILSAGQDRAFRLFSVIQ 345 (809)
Q Consensus 294 vw~~~~~~~~~~~~~~~~~h~~~v~~i~~~~-~~~~l~s~~~dg~i~~wd~~~ 345 (809)
+||.+... .+...+..|..++..+.|+| ++..|+++++||+++.||..+
T Consensus 206 l~d~rn~~---~p~S~l~ahk~~i~eV~FHpk~p~~Lft~sedGslw~wdas~ 255 (319)
T KOG4714|consen 206 LWDARNVA---MPVSLLKAHKAEIWEVHFHPKNPEHLFTCSEDGSLWHWDAST 255 (319)
T ss_pred EEEccccc---chHHHHHHhhhhhhheeccCCCchheeEecCCCcEEEEcCCC
Confidence 99988763 34455678999999999999 788999999999999999753
No 303
>KOG0882 consensus Cyclophilin-related peptidyl-prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones]
Probab=98.82 E-value=1.3e-07 Score=94.32 Aligned_cols=275 Identities=15% Similarity=0.119 Sum_probs=180.7
Q ss_pred CCCCEEEEEEcCCCCEEEEEeCCCeEEEEEeeC--Ce-EEEEEeccCCCcEEEEEEecCCCCEEEEEcC-CCcEEEEECC
Q 003579 180 WGSSISSCVSSPALDVVAVGCSDGKIHVHNVRY--DE-ELVTFTHSMRGAVTALAFSSDGQPLLASGAS-SGVISIWNLE 255 (809)
Q Consensus 180 ~~~~I~~l~~sp~~~~la~g~~dg~i~iwd~~~--~~-~~~~~~~~~~~~V~~l~fs~dg~~~lasg~~-dg~I~iwdl~ 255 (809)
|...|+.+..+. .+++.+++.||.++.|.-.. +. .+..+.. |-+.|.+++.+-+|. ++.+.+. |..++++|++
T Consensus 8 hrd~i~hv~~tk-a~fiiqASlDGh~KFWkKs~isGvEfVKhFra-HL~~I~sl~~S~dg~-L~~Sv~d~Dhs~KvfDvE 84 (558)
T KOG0882|consen 8 HRDVITHVFPTK-AKFIIQASLDGHKKFWKKSRISGVEFVKHFRA-HLGVILSLAVSYDGW-LFRSVEDPDHSVKVFDVE 84 (558)
T ss_pred ccceeeeEeeeh-hheEEeeecchhhhhcCCCCccceeehhhhHH-HHHHHHhhhccccce-eEeeccCcccceeEEEee
Confidence 667777766554 47999999999999997542 22 2223333 367899999999998 8888776 9999999998
Q ss_pred CceeeeeeecccccceEEEEEecCCC--EEE-EEcCCCcEEEEEeeCCCCCceeEEeccCCCCCCeeEEEecCCCEEEEE
Q 003579 256 KRRLQSVIREAHDNAIISLHFFANEP--VLM-SASADNSIKMWIFDTTDGDPRLLRFRSGHSAPPLCIRFYANGRHILSA 332 (809)
Q Consensus 256 ~~~~~~~~~~~h~~~V~~l~~~~~~~--~l~-s~s~d~~i~vw~~~~~~~~~~~~~~~~~h~~~v~~i~~~~~~~~l~s~ 332 (809)
+-..+..++...--.-.+...+++.. .++ +.-.++.+.++| ......+....-.-|..+|.++.+.+-+..+++.
T Consensus 85 n~DminmiKL~~lPg~a~wv~skGd~~s~IAVs~~~sg~i~VvD--~~~d~~q~~~fkklH~sPV~~i~y~qa~Ds~vSi 162 (558)
T KOG0882|consen 85 NFDMINMIKLVDLPGFAEWVTSKGDKISLIAVSLFKSGKIFVVD--GFGDFCQDGYFKKLHFSPVKKIRYNQAGDSAVSI 162 (558)
T ss_pred ccchhhhcccccCCCceEEecCCCCeeeeEEeecccCCCcEEEC--CcCCcCccceecccccCceEEEEeeccccceeec
Confidence 87666555422211122222233221 232 233467777774 3333334555566799999999999999999999
Q ss_pred ECCCCEEEEEeeecccceecchhhHHHHHhhccchhhhhccCceeEEeeccccccccceeEEeecCCceEEEEEeeeeee
Q 003579 333 GQDRAFRLFSVIQDQQSRELSQRHVAKRARKLKMKEEELKLKPVIAFDCAEIRERDWCNVVTCHMDTAQAYVWRLQNFVL 412 (809)
Q Consensus 333 ~~dg~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~ 412 (809)
...|.|..|.....-+. .... ..|.+..
T Consensus 163 D~~gmVEyWs~e~~~qf---Pr~~----------------------------------------------l~~~~K~--- 190 (558)
T KOG0882|consen 163 DISGMVEYWSAEGPFQF---PRTN----------------------------------------------LNFELKH--- 190 (558)
T ss_pred cccceeEeecCCCcccC---cccc----------------------------------------------ccccccc---
Confidence 99999999987531100 0000 0011100
Q ss_pred cceeeecCCCCCCCeEEEEEcCCCCEEEEEeCCCcEEEEECCCCceeeeeeCcccc------------------------
Q 003579 413 GEHILRPCPENPTAVKACTISACGNFAVLGTAGGWIERFNLQSGISRGSYLDMSER------------------------ 468 (809)
Q Consensus 413 ~~~~~~~~~~~~~~v~~v~~s~~g~~l~~g~~~g~i~i~~~~~~~~~~~~~~~~~~------------------------ 468 (809)
+..+-.........+++.++|+|..+..-..|..|++++..+|...+.+......
T Consensus 191 -eTdLy~f~K~Kt~pts~Efsp~g~qistl~~DrkVR~F~~KtGklvqeiDE~~t~~~~q~ks~y~l~~VelgRRmaver 269 (558)
T KOG0882|consen 191 -ETDLYGFPKAKTEPTSFEFSPDGAQISTLNPDRKVRGFVFKTGKLVQEIDEVLTDAQYQPKSPYGLMHVELGRRMAVER 269 (558)
T ss_pred -cchhhcccccccCccceEEccccCcccccCcccEEEEEEeccchhhhhhhccchhhhhccccccccceeehhhhhhHHh
Confidence 0011111123477889999999999999999999999999999887766433211
Q ss_pred cccCccc-cEEEEEEcCCCCEEEEEeCcCeEEEEECCCCceeeeee
Q 003579 469 SNYAHNG-EVVGVACDSTNTLMISAGYHGDIKVWDFKGRDLKSRWE 513 (809)
Q Consensus 469 ~~~~h~~-~v~~l~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~ 513 (809)
.+..|.. .-+.+.|+..+.+|+-++.=| |++.++.+++..+.+.
T Consensus 270 elek~~~~~~~~~~fdes~~flly~t~~g-ikvin~~tn~v~ri~g 314 (558)
T KOG0882|consen 270 ELEKHGSTVGTNAVFDESGNFLLYGTILG-IKVINLDTNTVVRILG 314 (558)
T ss_pred hHhhhcCcccceeEEcCCCCEEEeeccee-EEEEEeecCeEEEEec
Confidence 1122322 345678899999998887644 8899999888777664
No 304
>PRK02888 nitrous-oxide reductase; Validated
Probab=98.82 E-value=2.1e-06 Score=92.49 Aligned_cols=188 Identities=10% Similarity=-0.000 Sum_probs=124.5
Q ss_pred CeEEEEEcCCCCEEEEEeCC---C-cEEEEECCCCceeeeeeCcccccccCccccEEEEEEcCCCCEEEEEeCcCeEEEE
Q 003579 426 AVKACTISACGNFAVLGTAG---G-WIERFNLQSGISRGSYLDMSERSNYAHNGEVVGVACDSTNTLMISAGYHGDIKVW 501 (809)
Q Consensus 426 ~v~~v~~s~~g~~l~~g~~~---g-~i~i~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~l~s~~~dg~i~iw 501 (809)
....++++++|+++++.+.+ | .+...+.........+.. .. ..++.++|++... .++.|.+.
T Consensus 236 npd~v~~spdGk~afvTsyNsE~G~tl~em~a~e~d~~vvfni----------~~--iea~vkdGK~~~V--~gn~V~VI 301 (635)
T PRK02888 236 NLDNVDTDYDGKYAFSTCYNSEEGVTLAEMMAAERDWVVVFNI----------AR--IEEAVKAGKFKTI--GGSKVPVV 301 (635)
T ss_pred CcccceECCCCCEEEEeccCcccCcceeeeccccCceEEEEch----------HH--HHHhhhCCCEEEE--CCCEEEEE
Confidence 44567889999999888632 1 222222211111111100 00 0023446776655 36789999
Q ss_pred ECCC-----CceeeeeecCCCeEEEEEeeCCCEEEEEeC-CCeEEEEEcCCCe------------EEEEEecCCCCeeeE
Q 003579 502 DFKG-----RDLKSRWEVGCSLVKIVYHRVNGLLATVAD-DLVIRLFDVVALR------------MVRKFEGHTDRITDF 563 (809)
Q Consensus 502 d~~~-----~~~~~~~~~~~~i~~~~~s~~~~~la~~~~-d~~I~v~d~~~~~------------~~~~~~~h~~~I~~l 563 (809)
|..+ .+.+..+........+.++|||+++++++. +.++.|+|+.+.+ ++.+..--.+ -...
T Consensus 302 D~~t~~~~~~~v~~yIPVGKsPHGV~vSPDGkylyVanklS~tVSVIDv~k~k~~~~~~~~~~~~vvaevevGlG-PLHT 380 (635)
T PRK02888 302 DGRKAANAGSALTRYVPVPKNPHGVNTSPDGKYFIANGKLSPTVTVIDVRKLDDLFDGKIKPRDAVVAEPELGLG-PLHT 380 (635)
T ss_pred ECCccccCCcceEEEEECCCCccceEECCCCCEEEEeCCCCCcEEEEEChhhhhhhhccCCccceEEEeeccCCC-cceE
Confidence 9998 577888888899999999999998887765 8899999998855 2444443233 3457
Q ss_pred EECCCCCEEEEEeCCCeEEEEEcCC----------ccEEEEeeeCcceEEEEE------cCCCCeEEEEEeCCCeEEEee
Q 003579 564 CFSEDGKWLLSSGMDGSLRIWDVIL----------ARQIDAIHVDVSITALSL------SPNMDVLATAHVDQNGVYLWV 627 (809)
Q Consensus 564 ~fspdg~~l~s~s~D~~I~vwd~~~----------~~~i~~~~~~~~v~~l~~------spdg~~lat~~~d~~~i~lW~ 627 (809)
+|.++|....|-..|..|..||+.+ ...++.+..+-.+-.+.- .|||+||++...-.
T Consensus 381 aFDg~G~aytslf~dsqv~kwn~~~a~~~~~g~~~~~v~~k~dV~y~pgh~~~~~g~t~~~dgk~l~~~nk~s------- 453 (635)
T PRK02888 381 AFDGRGNAYTTLFLDSQIVKWNIEAAIRAYKGEKVDPIVQKLDVHYQPGHNHASMGETKEADGKWLVSLNKFS------- 453 (635)
T ss_pred EECCCCCEEEeEeecceeEEEehHHHHHHhccccCCcceecccCCCccceeeecCCCcCCCCCCEEEEccccc-------
Confidence 8999999888888999999999987 345566655544444444 68999998875433
Q ss_pred cCcccCCCC
Q 003579 628 NRCMFSGDS 636 (809)
Q Consensus 628 ~~~~~~~~~ 636 (809)
+.+|-|+.
T Consensus 454 -kdrfl~vg 461 (635)
T PRK02888 454 -KDRFLPVG 461 (635)
T ss_pred -cccccCCC
Confidence 35566554
No 305
>KOG4714 consensus Nucleoporin [Nuclear structure]
Probab=98.81 E-value=6.3e-08 Score=89.83 Aligned_cols=166 Identities=19% Similarity=0.295 Sum_probs=109.1
Q ss_pred eeeEEcCCccccEEEEeCCCCCCEEEEEeCCCeEEEEeCCCCc-eEEEEcCCCCCEEEEEEcCCCCEEEEEe-----CCC
Q 003579 130 VGHVKLDDKFTPTCIMHPDTYLNKVIVGSQEGSLQLWNISTKK-KLYEFKGWGSSISSCVSSPALDVVAVGC-----SDG 203 (809)
Q Consensus 130 ~~~~~~~~~~~~~~~~~p~~~~~~l~~~~~dg~i~lwd~~~~~-~~~~~~~~~~~I~~l~~sp~~~~la~g~-----~dg 203 (809)
...+..+.+......++..+ +.+++++.||.+.+.+.+.-. ..+....-...-.+.+....+..+.++. .-+
T Consensus 82 ~~~~a~~sep~p~~~~s~~~--t~V~~~~~dg~~~v~s~~~~~~~~~~i~~~~~~~as~~~~~~~~~i~s~~~g~~n~~d 159 (319)
T KOG4714|consen 82 FKVLAKNSEIDPNDACTMTD--NRVCIGYADGSLAVFSTDKDLALMSRIPSIHSGSASRKICRHGNSILSGGCGNWNAQD 159 (319)
T ss_pred eeeeeccCCCCCcccccccC--CceEecCCCceEEEEechHHHhhhhhcccccccccccceeecccEEecCCcceEeecc
Confidence 34444444444444455555 789999999999999875411 1111111111111222333444444432 123
Q ss_pred eEEEEEeeCCeEEEEEeccCCCcEEEEEEecCCCCEEEEEcCCCcEEEEECCCceeeeeeecccccceEEEEEecCC-CE
Q 003579 204 KIHVHNVRYDEELVTFTHSMRGAVTALAFSSDGQPLLASGASSGVISIWNLEKRRLQSVIREAHDNAIISLHFFANE-PV 282 (809)
Q Consensus 204 ~i~iwd~~~~~~~~~~~~~~~~~V~~l~fs~dg~~~lasg~~dg~I~iwdl~~~~~~~~~~~~h~~~V~~l~~~~~~-~~ 282 (809)
..+.|+++..+.+..-... ...|++++-+|..++++++|+.||.+.+||.++......+..+|..+++.+.|+|.. ..
T Consensus 160 ~~~a~~~~p~~t~~~~~~~-~~~v~~l~~hp~qq~~v~cgt~dg~~~l~d~rn~~~p~S~l~ahk~~i~eV~FHpk~p~~ 238 (319)
T KOG4714|consen 160 NFYANTLDPIKTLIPSKKA-LDAVTALCSHPAQQHLVCCGTDDGIVGLWDARNVAMPVSLLKAHKAEIWEVHFHPKNPEH 238 (319)
T ss_pred ceeeecccccccccccccc-cccchhhhCCcccccEEEEecCCCeEEEEEcccccchHHHHHHhhhhhhheeccCCCchh
Confidence 4566666544433333333 345999999999888999999999999999999866555555999999999999954 58
Q ss_pred EEEEcCCCcEEEEEee
Q 003579 283 LMSASADNSIKMWIFD 298 (809)
Q Consensus 283 l~s~s~d~~i~vw~~~ 298 (809)
|++++.||++..||-.
T Consensus 239 Lft~sedGslw~wdas 254 (319)
T KOG4714|consen 239 LFTCSEDGSLWHWDAS 254 (319)
T ss_pred eeEecCCCcEEEEcCC
Confidence 9999999999999765
No 306
>COG5170 CDC55 Serine/threonine protein phosphatase 2A, regulatory subunit [Signal transduction mechanisms]
Probab=98.78 E-value=1.9e-07 Score=88.76 Aligned_cols=192 Identities=19% Similarity=0.295 Sum_probs=129.7
Q ss_pred CCCCCCEEEEEeCCCeEEEEeCCCCc--e-----------------E-----------------------EEE-cCCCCC
Q 003579 147 PDTYLNKVIVGSQEGSLQLWNISTKK--K-----------------L-----------------------YEF-KGWGSS 183 (809)
Q Consensus 147 p~~~~~~l~~~~~dg~i~lwd~~~~~--~-----------------~-----------------------~~~-~~~~~~ 183 (809)
.++..+.++..+.|.+|++|.+.... . + +.. ..|.-.
T Consensus 95 ~~t~r~hFLlstNdktiKlWKiyeknlk~va~nnls~~~~~~~~g~~~s~~~l~lprls~hd~iiaa~p~rvyaNaH~yh 174 (460)
T COG5170 95 DDTGRNHFLLSTNDKTIKLWKIYEKNLKVVAENNLSDSFHSPMGGPLTSTKELLLPRLSEHDEIIAAKPCRVYANAHPYH 174 (460)
T ss_pred cCCCcceEEEecCCceeeeeeeecccchhhhccccccccccccCCCcCCHHHhhcccccccceEEEeccceeccccceeE
Confidence 34444778888899999999874320 0 0 001 346667
Q ss_pred EEEEEEcCCCCEEEEEeCCCeEEEEEeeCCeE---EEEEeccC----CCcEEEEEEecCCCCEEEEEcCCCcEEEEECCC
Q 003579 184 ISSCVSSPALDVVAVGCSDGKIHVHNVRYDEE---LVTFTHSM----RGAVTALAFSSDGQPLLASGASSGVISIWNLEK 256 (809)
Q Consensus 184 I~~l~~sp~~~~la~g~~dg~i~iwd~~~~~~---~~~~~~~~----~~~V~~l~fs~dg~~~lasg~~dg~I~iwdl~~ 256 (809)
|.++.|..|...++++. |-.|.+|++.--.. +..++.+. ..-|++..|+|....++.-.+..|.|++-|++.
T Consensus 175 iNSiS~NsD~et~lSaD-dLrINLWnl~i~D~sFnIVDiKP~nmeeLteVItSaeFhp~~cn~fmYSsSkG~Ikl~DlRq 253 (460)
T COG5170 175 INSISFNSDKETLLSAD-DLRINLWNLEIIDGSFNIVDIKPHNMEELTEVITSAEFHPEMCNVFMYSSSKGEIKLNDLRQ 253 (460)
T ss_pred eeeeeecCchheeeecc-ceeeeeccccccCCceEEEeccCccHHHHHHHHhhcccCHhHcceEEEecCCCcEEehhhhh
Confidence 88899999888887764 57899999874332 22222221 246899999998765777777899999999984
Q ss_pred ceee------ee--ee-------cccccceEEEEEecCCCEEEEEcCCCcEEEEEeeCCCCCceeEEeccCCC-------
Q 003579 257 RRLQ------SV--IR-------EAHDNAIISLHFFANEPVLMSASADNSIKMWIFDTTDGDPRLLRFRSGHS------- 314 (809)
Q Consensus 257 ~~~~------~~--~~-------~~h~~~V~~l~~~~~~~~l~s~s~d~~i~vw~~~~~~~~~~~~~~~~~h~------- 314 (809)
..+. .. +. ..-...|..+.|+++|+++++-+. .++++||++... .++.+..-|.
T Consensus 254 ~alcdn~~klfe~~~D~v~~~ff~eivsSISD~kFs~ngryIlsRdy-ltvkiwDvnm~k---~pikTi~~h~~l~~~l~ 329 (460)
T COG5170 254 SALCDNSKKLFELTIDGVDVDFFEEIVSSISDFKFSDNGRYILSRDY-LTVKIWDVNMAK---NPIKTIPMHCDLMDELN 329 (460)
T ss_pred hhhccCchhhhhhccCcccchhHHHHhhhhcceEEcCCCcEEEEecc-ceEEEEeccccc---CCceeechHHHHHHHHH
Confidence 3211 00 00 122367889999999999887664 689999998765 3344433331
Q ss_pred -----CCC---eeEEEecCCCEEEEEECCCCEEEEEe
Q 003579 315 -----APP---LCIRFYANGRHILSAGQDRAFRLFSV 343 (809)
Q Consensus 315 -----~~v---~~i~~~~~~~~l~s~~~dg~i~~wd~ 343 (809)
..| ..+.|+.|.+.+++|+......++-+
T Consensus 330 d~YEnDaifdkFeisfSgd~~~v~sgsy~NNfgiyp~ 366 (460)
T COG5170 330 DVYENDAIFDKFEISFSGDDKHVLSGSYSNNFGIYPT 366 (460)
T ss_pred hhhhccceeeeEEEEecCCcccccccccccceeeecc
Confidence 122 35778889999999998888887764
No 307
>PF06433 Me-amine-dh_H: Methylamine dehydrogenase heavy chain (MADH); InterPro: IPR009451 Methylamine dehydrogenase (1.4.99.3 from EC) is a periplasmic quinoprotein found in several methyltrophic bacteria []. It is induced when grown on methylamine as a carbon source MADH and catalyses the oxidative deamination of amines to their corresponding aldehydes. The redox cofactor of this enzyme is tryptophan tryptophylquinone (TTQ). Electrons derived from the oxidation of methylamine are passed to an electron acceptor, which is usually the blue-copper protein amicyanin (IPR002386 from INTERPRO). RCH2NH2 + H2O + acceptor = RCHO + NH3 + reduced acceptor MADH is a hetero-tetramer, comprised of two heavy subunits and two light subunits. The heavy subunit forms a seven-bladed beta-propeller like structure [].; GO: 0030058 amine dehydrogenase activity, 0030416 methylamine metabolic process, 0055114 oxidation-reduction process, 0042597 periplasmic space; PDB: 3RN1_F 3SVW_F 3PXT_F 3L4O_F 3L4M_D 3SJL_F 3PXS_D 3ORV_F 3RMZ_F 3RLM_F ....
Probab=98.77 E-value=2.4e-05 Score=78.17 Aligned_cols=291 Identities=13% Similarity=0.135 Sum_probs=167.0
Q ss_pred CeEEEEeCCCCceEEEEcCCCCCEEEEEEcCCCCEEEEEe----------CCCeEEEEEeeCCeEEEEEeccCCCc----
Q 003579 161 GSLQLWNISTKKKLYEFKGWGSSISSCVSSPALDVVAVGC----------SDGKIHVHNVRYDEELVTFTHSMRGA---- 226 (809)
Q Consensus 161 g~i~lwd~~~~~~~~~~~~~~~~I~~l~~sp~~~~la~g~----------~dg~i~iwd~~~~~~~~~~~~~~~~~---- 226 (809)
+++.++|.++++.+-.+.. +-.-.+..+|+++.++++. ..-.|.+||..+-.....+....+..
T Consensus 17 ~rv~viD~d~~k~lGmi~~--g~~~~~~~spdgk~~y~a~T~~sR~~rG~RtDvv~~~D~~TL~~~~EI~iP~k~R~~~~ 94 (342)
T PF06433_consen 17 SRVYVIDADSGKLLGMIDT--GFLGNVALSPDGKTIYVAETFYSRGTRGERTDVVEIWDTQTLSPTGEIEIPPKPRAQVV 94 (342)
T ss_dssp EEEEEEETTTTEEEEEEEE--ESSEEEEE-TTSSEEEEEEEEEEETTEEEEEEEEEEEETTTTEEEEEEEETTS-B--BS
T ss_pred ceEEEEECCCCcEEEEeec--ccCCceeECCCCCEEEEEEEEEeccccccceeEEEEEecCcCcccceEecCCcchheec
Confidence 4799999999998877764 2334467899999888753 23469999999998888777553212
Q ss_pred --EEEEEEecCCCCEEEEE--cCCCcEEEEECCCceeeeeeecccccceEEEEEecCCCEEEEEcCCCcEEEEEeeCCCC
Q 003579 227 --VTALAFSSDGQPLLASG--ASSGVISIWNLEKRRLQSVIREAHDNAIISLHFFANEPVLMSASADNSIKMWIFDTTDG 302 (809)
Q Consensus 227 --V~~l~fs~dg~~~lasg--~~dg~I~iwdl~~~~~~~~~~~~h~~~V~~l~~~~~~~~l~s~s~d~~i~vw~~~~~~~ 302 (809)
...++++.||+ ++.+. +....|.|-|+..++.+..+.. ..+..+--+. ...+.+.+.||++....++....
T Consensus 95 ~~~~~~~ls~dgk-~~~V~N~TPa~SVtVVDl~~~kvv~ei~~---PGC~~iyP~~-~~~F~~lC~DGsl~~v~Ld~~Gk 169 (342)
T PF06433_consen 95 PYKNMFALSADGK-FLYVQNFTPATSVTVVDLAAKKVVGEIDT---PGCWLIYPSG-NRGFSMLCGDGSLLTVTLDADGK 169 (342)
T ss_dssp --GGGEEE-TTSS-EEEEEEESSSEEEEEEETTTTEEEEEEEG---TSEEEEEEEE-TTEEEEEETTSCEEEEEETSTSS
T ss_pred ccccceEEccCCc-EEEEEccCCCCeEEEEECCCCceeeeecC---CCEEEEEecC-CCceEEEecCCceEEEEECCCCC
Confidence 23467888998 54443 3556899999999999888762 2222222222 24577888899999998886543
Q ss_pred Ccee-EEeccCCCCCCe-eEEEecCCCEEEEEECCCCEEEEEeeecccceecchhhHHHHHhhccchhhhhccCceeEEe
Q 003579 303 DPRL-LRFRSGHSAPPL-CIRFYANGRHILSAGQDRAFRLFSVIQDQQSRELSQRHVAKRARKLKMKEEELKLKPVIAFD 380 (809)
Q Consensus 303 ~~~~-~~~~~~h~~~v~-~i~~~~~~~~l~s~~~dg~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~ 380 (809)
..+. ...+.....++. .-.+...+..++--+.+|.|+-.++........
T Consensus 170 ~~~~~t~~F~~~~dp~f~~~~~~~~~~~~~F~Sy~G~v~~~dlsg~~~~~~----------------------------- 220 (342)
T PF06433_consen 170 EAQKSTKVFDPDDDPLFEHPAYSRDGGRLYFVSYEGNVYSADLSGDSAKFG----------------------------- 220 (342)
T ss_dssp EEEEEEEESSTTTS-B-S--EEETTTTEEEEEBTTSEEEEEEETTSSEEEE-----------------------------
T ss_pred EeEeeccccCCCCcccccccceECCCCeEEEEecCCEEEEEeccCCccccc-----------------------------
Confidence 2211 112222222222 333444555566677888877777654432111
Q ss_pred eccccccccceeEEeecCCceEEEEEeeeeeecceeeecCCCCCCCeEEEEEcCCCCEEEEE-eCCCcEEEEECCCCcee
Q 003579 381 CAEIRERDWCNVVTCHMDTAQAYVWRLQNFVLGEHILRPCPENPTAVKACTISACGNFAVLG-TAGGWIERFNLQSGISR 459 (809)
Q Consensus 381 ~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~v~~v~~s~~g~~l~~g-~~~g~i~i~~~~~~~~~ 459 (809)
.-|++-..... .-.|-|.|-.++.. -..+.+++.- ..+.
T Consensus 221 ----------------------~~~~~~t~~e~---------------~~~WrPGG~Q~~A~~~~~~rlyvLM-h~g~-- 260 (342)
T PF06433_consen 221 ----------------------KPWSLLTDAEK---------------ADGWRPGGWQLIAYHAASGRLYVLM-HQGG-- 260 (342)
T ss_dssp ----------------------EEEESS-HHHH---------------HTTEEE-SSS-EEEETTTTEEEEEE-EE----
T ss_pred ----------------------CcccccCcccc---------------ccCcCCcceeeeeeccccCeEEEEe-cCCC--
Confidence 01111000000 00122222111111 1122222210 0000
Q ss_pred eeeeCcccccccCccccEEEEEEcCCCCEEEEEeCcCeEEEEECCCCceeeeeecCCCeEEEEEeeCCC-EEEEE-eCCC
Q 003579 460 GSYLDMSERSNYAHNGEVVGVACDSTNTLMISAGYHGDIKVWDFKGRDLKSRWEVGCSLVKIVYHRVNG-LLATV-ADDL 537 (809)
Q Consensus 460 ~~~~~~~~~~~~~h~~~v~~l~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~i~~~~~s~~~~-~la~~-~~d~ 537 (809)
...|+.+ ...|.++|+.+++.+.++....++.++..+.+.+ +|++. ..++
T Consensus 261 ----------~gsHKdp------------------gteVWv~D~~t~krv~Ri~l~~~~~Si~Vsqd~~P~L~~~~~~~~ 312 (342)
T PF06433_consen 261 ----------EGSHKDP------------------GTEVWVYDLKTHKRVARIPLEHPIDSIAVSQDDKPLLYALSAGDG 312 (342)
T ss_dssp ----------TT-TTS-------------------EEEEEEEETTTTEEEEEEEEEEEESEEEEESSSS-EEEEEETTTT
T ss_pred ----------CCCccCC------------------ceEEEEEECCCCeEEEEEeCCCccceEEEccCCCcEEEEEcCCCC
Confidence 0123221 1247889999999999999998999999999877 55444 4579
Q ss_pred eEEEEEcCCCeEEEEEec
Q 003579 538 VIRLFDVVALRMVRKFEG 555 (809)
Q Consensus 538 ~I~v~d~~~~~~~~~~~~ 555 (809)
.+.+||..+++.++++.+
T Consensus 313 ~l~v~D~~tGk~~~~~~~ 330 (342)
T PF06433_consen 313 TLDVYDAATGKLVRSIEQ 330 (342)
T ss_dssp EEEEEETTT--EEEEE--
T ss_pred eEEEEeCcCCcEEeehhc
Confidence 999999999999998874
No 308
>KOG4649 consensus PQQ (pyrrolo-quinoline quinone) repeat protein [Secondary metabolites biosynthesis, transport and catabolism]
Probab=98.76 E-value=7.7e-05 Score=69.84 Aligned_cols=106 Identities=14% Similarity=0.156 Sum_probs=79.0
Q ss_pred eCCEEEEEeCCCcEEEEEcCCCccccceeeeEEcCCccccEEEEeCCCCCCEEEEEeCCCeEEEEeCCCCceEEEEcCCC
Q 003579 102 FGEHILSIDIDGNMFIWAFKGIEENLAPVGHVKLDDKFTPTCIMHPDTYLNKVIVGSQEGSLQLWNISTKKKLYEFKGWG 181 (809)
Q Consensus 102 ~g~~l~s~~~dg~i~vWd~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~l~~~~~dg~i~lwd~~~~~~~~~~~~~~ 181 (809)
-|++++.|...|.+.+-+.++++. +..+...........+.+++ ..|+.|+.|++.+..|.++..+++..+...
T Consensus 62 vgdfVV~GCy~g~lYfl~~~tGs~----~w~f~~~~~vk~~a~~d~~~--glIycgshd~~~yalD~~~~~cVykskcgG 135 (354)
T KOG4649|consen 62 VGDFVVLGCYSGGLYFLCVKTGSQ----IWNFVILETVKVRAQCDFDG--GLIYCGSHDGNFYALDPKTYGCVYKSKCGG 135 (354)
T ss_pred ECCEEEEEEccCcEEEEEecchhh----eeeeeehhhhccceEEcCCC--ceEEEecCCCcEEEecccccceEEecccCC
Confidence 588899999999999999999987 45555555555566678888 789999999999999999999999987655
Q ss_pred CCEEEEEEcCCCCEEEEEeCCCeEEEEEeeCC
Q 003579 182 SSISSCVSSPALDVVAVGCSDGKIHVHNVRYD 213 (809)
Q Consensus 182 ~~I~~l~~sp~~~~la~g~~dg~i~iwd~~~~ 213 (809)
+.-.+-+..|-...|..+...|.+.--+.+..
T Consensus 136 ~~f~sP~i~~g~~sly~a~t~G~vlavt~~~~ 167 (354)
T KOG4649|consen 136 GTFVSPVIAPGDGSLYAAITAGAVLAVTKNPY 167 (354)
T ss_pred ceeccceecCCCceEEEEeccceEEEEccCCC
Confidence 44445556663334555555566665555544
No 309
>PF13360 PQQ_2: PQQ-like domain; PDB: 3HXJ_B 1YIQ_A 1KV9_A 3Q54_A 2YH3_A 3PRW_A 3P1L_A 3Q7M_A 3Q7O_A 3Q7N_A ....
Probab=98.72 E-value=1.3e-05 Score=80.08 Aligned_cols=216 Identities=14% Similarity=0.105 Sum_probs=138.1
Q ss_pred CCeEEEEEcCccEEEEecCCC--CCCcEEEEE-eCCeEEEEECC-eEEEEEC--CeeEEEEccccccEEEEEEeCCEEEE
Q 003579 35 GKAFHIYNCAKLNLVLVGPQL--PKKIRALAS-YRDYTFAAYGN-HIAVVKR--AHQVATWSRHSAKVNLLLLFGEHILS 108 (809)
Q Consensus 35 ~~~i~iwd~~~~~~~~~~~~~--~~~I~~la~-~~~~~~~a~g~-~i~vw~~--~~~~~~~~~h~~~V~~l~~~g~~l~s 108 (809)
+++|..||..+++.+-....- .....+.++ .....|++.++ .++.||. ++.+-+..............++.++.
T Consensus 2 ~g~l~~~d~~tG~~~W~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~l~~~d~~tG~~~W~~~~~~~~~~~~~~~~~~v~v 81 (238)
T PF13360_consen 2 DGTLSALDPRTGKELWSYDLGPGIGGPVATAVPDGGRVYVASGDGNLYALDAKTGKVLWRFDLPGPISGAPVVDGGRVYV 81 (238)
T ss_dssp TSEEEEEETTTTEEEEEEECSSSCSSEEETEEEETTEEEEEETTSEEEEEETTTSEEEEEEECSSCGGSGEEEETTEEEE
T ss_pred CCEEEEEECCCCCEEEEEECCCCCCCccceEEEeCCEEEEEcCCCEEEEEECCCCCEEEEeeccccccceeeeccccccc
Confidence 578999999999988877431 233333344 66677777544 4999995 66665543211111113567888888
Q ss_pred EeCCCcEEEEEcCCCccccceeeeE-EcCC---ccccEEEEeCCCCCCEEEEEeCCCeEEEEeCCCCceEEEEcCCCCC-
Q 003579 109 IDIDGNMFIWAFKGIEENLAPVGHV-KLDD---KFTPTCIMHPDTYLNKVIVGSQEGSLQLWNISTKKKLYEFKGWGSS- 183 (809)
Q Consensus 109 ~~~dg~i~vWd~~~~~~~~~~~~~~-~~~~---~~~~~~~~~p~~~~~~l~~~~~dg~i~lwd~~~~~~~~~~~~~~~~- 183 (809)
++.++.|..+|..+++. .-+. .... ...........+ +.++++..++.|..+|+++|+.+.........
T Consensus 82 ~~~~~~l~~~d~~tG~~----~W~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~g~l~~~d~~tG~~~w~~~~~~~~~ 155 (238)
T PF13360_consen 82 GTSDGSLYALDAKTGKV----LWSIYLTSSPPAGVRSSSSPAVDG--DRLYVGTSSGKLVALDPKTGKLLWKYPVGEPRG 155 (238)
T ss_dssp EETTSEEEEEETTTSCE----EEEEEE-SSCTCSTB--SEEEEET--TEEEEEETCSEEEEEETTTTEEEEEEESSTT-S
T ss_pred ccceeeeEecccCCcce----eeeeccccccccccccccCceEec--CEEEEEeccCcEEEEecCCCcEEEEeecCCCCC
Confidence 88899999999999887 3332 2111 111222222234 67999988999999999999999988764322
Q ss_pred ---------EEEEEEcCCCCEEEEEeCCCeEEEEEeeCCeEEEEEeccCCCcEEEEEEecCCCCEEEEEcCCCcEEEEEC
Q 003579 184 ---------ISSCVSSPALDVVAVGCSDGKIHVHNVRYDEELVTFTHSMRGAVTALAFSSDGQPLLASGASSGVISIWNL 254 (809)
Q Consensus 184 ---------I~~l~~sp~~~~la~g~~dg~i~iwd~~~~~~~~~~~~~~~~~V~~l~fs~dg~~~lasg~~dg~I~iwdl 254 (809)
+.+-....++ .+.++..+|.+.-+|+.+++.+.... ...+..+ ...++. .|++++.++.|..||+
T Consensus 156 ~~~~~~~~~~~~~~~~~~~-~v~~~~~~g~~~~~d~~tg~~~w~~~---~~~~~~~-~~~~~~-~l~~~~~~~~l~~~d~ 229 (238)
T PF13360_consen 156 SSPISSFSDINGSPVISDG-RVYVSSGDGRVVAVDLATGEKLWSKP---ISGIYSL-PSVDGG-TLYVTSSDGRLYALDL 229 (238)
T ss_dssp S--EEEETTEEEEEECCTT-EEEEECCTSSEEEEETTTTEEEEEEC---SS-ECEC-EECCCT-EEEEEETTTEEEEEET
T ss_pred CcceeeecccccceEEECC-EEEEEcCCCeEEEEECCCCCEEEEec---CCCccCC-ceeeCC-EEEEEeCCCEEEEEEC
Confidence 1222222344 77777777854444999999764333 2223332 345565 6676778999999999
Q ss_pred CCceeeee
Q 003579 255 EKRRLQSV 262 (809)
Q Consensus 255 ~~~~~~~~ 262 (809)
++++.+..
T Consensus 230 ~tG~~~W~ 237 (238)
T PF13360_consen 230 KTGKVVWQ 237 (238)
T ss_dssp TTTEEEEE
T ss_pred CCCCEEeE
Confidence 99987653
No 310
>PF13360 PQQ_2: PQQ-like domain; PDB: 3HXJ_B 1YIQ_A 1KV9_A 3Q54_A 2YH3_A 3PRW_A 3P1L_A 3Q7M_A 3Q7O_A 3Q7N_A ....
Probab=98.69 E-value=5.9e-06 Score=82.54 Aligned_cols=220 Identities=19% Similarity=0.172 Sum_probs=137.8
Q ss_pred CCcEEEEEcCCCccccceeeeEEcCCccccEE-EEeCCCCCCEEEEEeCCCeEEEEeCCCCceEEEEcCCCCCEEEEEEc
Q 003579 112 DGNMFIWAFKGIEENLAPVGHVKLDDKFTPTC-IMHPDTYLNKVIVGSQEGSLQLWNISTKKKLYEFKGWGSSISSCVSS 190 (809)
Q Consensus 112 dg~i~vWd~~~~~~~~~~~~~~~~~~~~~~~~-~~~p~~~~~~l~~~~~dg~i~lwd~~~~~~~~~~~~~~~~I~~l~~s 190 (809)
+|+|..||..+++. +-+........... ...+++ +++++++.++.|..||..+|+.+.++.. ...+.... .
T Consensus 2 ~g~l~~~d~~tG~~----~W~~~~~~~~~~~~~~~~~~~--~~v~~~~~~~~l~~~d~~tG~~~W~~~~-~~~~~~~~-~ 73 (238)
T PF13360_consen 2 DGTLSALDPRTGKE----LWSYDLGPGIGGPVATAVPDG--GRVYVASGDGNLYALDAKTGKVLWRFDL-PGPISGAP-V 73 (238)
T ss_dssp TSEEEEEETTTTEE----EEEEECSSSCSSEEETEEEET--TEEEEEETTSEEEEEETTTSEEEEEEEC-SSCGGSGE-E
T ss_pred CCEEEEEECCCCCE----EEEEECCCCCCCccceEEEeC--CEEEEEcCCCEEEEEECCCCCEEEEeec-ccccccee-e
Confidence 67889999988877 44444422122222 133344 6788889999999999999999998875 22222211 2
Q ss_pred CCCCEEEEEeCCCeEEEEEeeCCeEEEEE-eccC--CCcEEEEEEecCCCCEEEEEcCCCcEEEEECCCceeeeeeeccc
Q 003579 191 PALDVVAVGCSDGKIHVHNVRYDEELVTF-THSM--RGAVTALAFSSDGQPLLASGASSGVISIWNLEKRRLQSVIREAH 267 (809)
Q Consensus 191 p~~~~la~g~~dg~i~iwd~~~~~~~~~~-~~~~--~~~V~~l~fs~dg~~~lasg~~dg~I~iwdl~~~~~~~~~~~~h 267 (809)
.++..+++++.++.+..+|..+|+.+.+. .... ......+....++. .++++..++.|..+|+++|+.+..... .
T Consensus 74 ~~~~~v~v~~~~~~l~~~d~~tG~~~W~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~g~l~~~d~~tG~~~w~~~~-~ 151 (238)
T PF13360_consen 74 VDGGRVYVGTSDGSLYALDAKTGKVLWSIYLTSSPPAGVRSSSSPAVDGD-RLYVGTSSGKLVALDPKTGKLLWKYPV-G 151 (238)
T ss_dssp EETTEEEEEETTSEEEEEETTTSCEEEEEEE-SSCTCSTB--SEEEEETT-EEEEEETCSEEEEEETTTTEEEEEEES-S
T ss_pred ecccccccccceeeeEecccCCcceeeeeccccccccccccccCceEecC-EEEEEeccCcEEEEecCCCcEEEEeec-C
Confidence 34567788888899999999999999885 3221 11122333333355 677777799999999999999888773 3
Q ss_pred ccc----------eEEEEEecCCCEEEEEcCCCcEEEEEeeCCCCCceeEEeccCCCCCCeeEEEecCCCEEEEEECCCC
Q 003579 268 DNA----------IISLHFFANEPVLMSASADNSIKMWIFDTTDGDPRLLRFRSGHSAPPLCIRFYANGRHILSAGQDRA 337 (809)
Q Consensus 268 ~~~----------V~~l~~~~~~~~l~s~s~d~~i~vw~~~~~~~~~~~~~~~~~h~~~v~~i~~~~~~~~l~s~~~dg~ 337 (809)
... +.+-....++ .++.++.++.+..+|+.... .+-... ...+.. ....++..++.++.++.
T Consensus 152 ~~~~~~~~~~~~~~~~~~~~~~~-~v~~~~~~g~~~~~d~~tg~----~~w~~~--~~~~~~-~~~~~~~~l~~~~~~~~ 223 (238)
T PF13360_consen 152 EPRGSSPISSFSDINGSPVISDG-RVYVSSGDGRVVAVDLATGE----KLWSKP--ISGIYS-LPSVDGGTLYVTSSDGR 223 (238)
T ss_dssp TT-SS--EEEETTEEEEEECCTT-EEEEECCTSSEEEEETTTTE----EEEEEC--SS-ECE-CEECCCTEEEEEETTTE
T ss_pred CCCCCcceeeecccccceEEECC-EEEEEcCCCeEEEEECCCCC----EEEEec--CCCccC-CceeeCCEEEEEeCCCE
Confidence 321 1222222344 67777777753333555442 222221 111111 13457778888889999
Q ss_pred EEEEEeeecccc
Q 003579 338 FRLFSVIQDQQS 349 (809)
Q Consensus 338 i~~wd~~~~~~~ 349 (809)
+..||+.+++..
T Consensus 224 l~~~d~~tG~~~ 235 (238)
T PF13360_consen 224 LYALDLKTGKVV 235 (238)
T ss_dssp EEEEETTTTEEE
T ss_pred EEEEECCCCCEE
Confidence 999999887654
No 311
>PF00400 WD40: WD domain, G-beta repeat; InterPro: IPR019781 WD-40 repeats (also known as WD or beta-transducin repeats) are short ~40 amino acid motifs, often terminating in a Trp-Asp (W-D) dipeptide. WD40 repeats usually assume a 7-8 bladed beta-propeller fold, but proteins have been found with 4 to 16 repeated units, which also form a circularised beta-propeller structure. WD-repeat proteins are a large family found in all eukaryotes and are implicated in a variety of functions ranging from signal transduction and transcription regulation to cell cycle control and apoptosis. Repeated WD40 motifs act as a site for protein-protein interaction, and proteins containing WD40 repeats are known to serve as platforms for the assembly of protein complexes or mediators of transient interplay among other proteins. The specificity of the proteins is determined by the sequences outside the repeats themselves. Examples of such complexes are G proteins (beta subunit is a beta-propeller), TAFII transcription factor, and E3 ubiquitin ligase [, ]. In Arabidopsis spp., several WD40-containing proteins act as key regulators of plant-specific developmental events.; PDB: 2ZKQ_a 3CFV_B 3CFS_B 1PEV_A 1NR0_A 1VYH_T 3RFH_A 3O2Z_T 3FRX_C 3U5G_g ....
Probab=98.68 E-value=6.5e-08 Score=65.06 Aligned_cols=39 Identities=41% Similarity=0.868 Sum_probs=37.3
Q ss_pred CeEEEEEecCCCCeeeEEECCCCCEEEEEeCCCeEEEEE
Q 003579 547 LRMVRKFEGHTDRITDFCFSEDGKWLLSSGMDGSLRIWD 585 (809)
Q Consensus 547 ~~~~~~~~~h~~~I~~l~fspdg~~l~s~s~D~~I~vwd 585 (809)
+++++++.+|.+.|++++|+|++++|++++.|++|++||
T Consensus 1 g~~~~~~~~h~~~i~~i~~~~~~~~~~s~~~D~~i~vwd 39 (39)
T PF00400_consen 1 GKCVRTFRGHSSSINSIAWSPDGNFLASGSSDGTIRVWD 39 (39)
T ss_dssp EEEEEEEESSSSSEEEEEEETTSSEEEEEETTSEEEEEE
T ss_pred CeEEEEEcCCCCcEEEEEEecccccceeeCCCCEEEEEC
Confidence 468899999999999999999999999999999999997
No 312
>PF08450 SGL: SMP-30/Gluconolaconase/LRE-like region; InterPro: IPR013658 This family describes a region that is found in proteins expressed by a variety of eukaryotic and prokaryotic species. These proteins include various enzymes, such as senescence marker protein 30 (SMP-30, Q15493 from SWISSPROT), gluconolactonase (Q01578 from SWISSPROT) and luciferin-regenerating enzyme (LRE, Q86DU5 from SWISSPROT). SMP-30 is known to hydrolyse diisopropyl phosphorofluoridate in the liver, and has been noted as having sequence similarity, in the region described in this family, with PON1 (P52430 from SWISSPROT) and LRE. ; PDB: 2GHS_A 2DG0_L 2DG1_D 2DSO_D 3E5Z_A 2IAT_A 2IAV_A 2GVV_A 3HLI_A 2GVU_A ....
Probab=98.67 E-value=7.7e-05 Score=74.75 Aligned_cols=191 Identities=15% Similarity=0.124 Sum_probs=122.4
Q ss_pred EEEeCCCCCCEEE-EEeCCCeEEEEeCCCCceEEEEcCCCCCEEEEEEc-CCCCEEEEEeCCCeEEEEEeeCCeEEEEEe
Q 003579 143 CIMHPDTYLNKVI-VGSQEGSLQLWNISTKKKLYEFKGWGSSISSCVSS-PALDVVAVGCSDGKIHVHNVRYDEELVTFT 220 (809)
Q Consensus 143 ~~~~p~~~~~~l~-~~~~dg~i~lwd~~~~~~~~~~~~~~~~I~~l~~s-p~~~~la~g~~dg~i~iwd~~~~~~~~~~~ 220 (809)
.++.+.. +.|+ +-...+.|..|+..+++... +.... ...+++. ++ ..++++...+ +.++|..+++......
T Consensus 5 p~~d~~~--g~l~~~D~~~~~i~~~~~~~~~~~~-~~~~~--~~G~~~~~~~-g~l~v~~~~~-~~~~d~~~g~~~~~~~ 77 (246)
T PF08450_consen 5 PVWDPRD--GRLYWVDIPGGRIYRVDPDTGEVEV-IDLPG--PNGMAFDRPD-GRLYVADSGG-IAVVDPDTGKVTVLAD 77 (246)
T ss_dssp EEEETTT--TEEEEEETTTTEEEEEETTTTEEEE-EESSS--EEEEEEECTT-SEEEEEETTC-EEEEETTTTEEEEEEE
T ss_pred eEEECCC--CEEEEEEcCCCEEEEEECCCCeEEE-EecCC--CceEEEEccC-CEEEEEEcCc-eEEEecCCCcEEEEee
Confidence 4566634 3444 44468899999988876543 22212 6677777 56 5566666544 5556988886544443
Q ss_pred c--c--CCCcEEEEEEecCCCCEEEEEcCC--------CcEEEEECCCceeeeeeecccccceEEEEEecCCCEEE-EEc
Q 003579 221 H--S--MRGAVTALAFSSDGQPLLASGASS--------GVISIWNLEKRRLQSVIREAHDNAIISLHFFANEPVLM-SAS 287 (809)
Q Consensus 221 ~--~--~~~~V~~l~fs~dg~~~lasg~~d--------g~I~iwdl~~~~~~~~~~~~h~~~V~~l~~~~~~~~l~-s~s 287 (809)
. . .....+.+++.++|+ +.++.... |.|..++.. ++...... .-...+.++|+|+++.|+ +-+
T Consensus 78 ~~~~~~~~~~~ND~~vd~~G~-ly~t~~~~~~~~~~~~g~v~~~~~~-~~~~~~~~--~~~~pNGi~~s~dg~~lyv~ds 153 (246)
T PF08450_consen 78 LPDGGVPFNRPNDVAVDPDGN-LYVTDSGGGGASGIDPGSVYRIDPD-GKVTVVAD--GLGFPNGIAFSPDGKTLYVADS 153 (246)
T ss_dssp EETTCSCTEEEEEEEE-TTS--EEEEEECCBCTTCGGSEEEEEEETT-SEEEEEEE--EESSEEEEEEETTSSEEEEEET
T ss_pred ccCCCcccCCCceEEEcCCCC-EEEEecCCCccccccccceEEECCC-CeEEEEec--CcccccceEECCcchheeeccc
Confidence 3 1 345789999999998 66655433 568888877 55444333 455678999999998665 556
Q ss_pred CCCcEEEEEeeCCCCCc---eeEEeccCCCCCCeeEEEecCCCEEEEEECCCCEEEEEee
Q 003579 288 ADNSIKMWIFDTTDGDP---RLLRFRSGHSAPPLCIRFYANGRHILSAGQDRAFRLFSVI 344 (809)
Q Consensus 288 ~d~~i~vw~~~~~~~~~---~~~~~~~~h~~~v~~i~~~~~~~~l~s~~~dg~i~~wd~~ 344 (809)
..+.|..++++...... +.........+.+-.+++..+|+..++....+.|.+++..
T Consensus 154 ~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~g~pDG~~vD~~G~l~va~~~~~~I~~~~p~ 213 (246)
T PF08450_consen 154 FNGRIWRFDLDADGGELSNRRVFIDFPGGPGYPDGLAVDSDGNLWVADWGGGRIVVFDPD 213 (246)
T ss_dssp TTTEEEEEEEETTTCCEEEEEEEEE-SSSSCEEEEEEEBTTS-EEEEEETTTEEEEEETT
T ss_pred ccceeEEEeccccccceeeeeeEEEcCCCCcCCCcceEcCCCCEEEEEcCCCEEEEECCC
Confidence 67888888877554421 2222233333347889999999887777778888888854
No 313
>KOG1645 consensus RING-finger-containing E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=98.66 E-value=3.6e-06 Score=83.35 Aligned_cols=165 Identities=11% Similarity=0.129 Sum_probs=115.1
Q ss_pred EEEEeCCCCceEEEEcCCCCCEEEEEEcCCCC-EEEEEeCCCeEEEEEeeCCeEEEEEeccCCCcEEEEEEecCCCCEEE
Q 003579 163 LQLWNISTKKKLYEFKGWGSSISSCVSSPALD-VVAVGCSDGKIHVHNVRYDEELVTFTHSMRGAVTALAFSSDGQPLLA 241 (809)
Q Consensus 163 i~lwd~~~~~~~~~~~~~~~~I~~l~~sp~~~-~la~g~~dg~i~iwd~~~~~~~~~~~~~~~~~V~~l~fs~dg~~~la 241 (809)
+++.+..+.+....+.+|...|..++|||..+ ++..++.+..|.|.|+++...+..+..+ ..+.+++|.-|..+++.
T Consensus 175 v~~l~~~~fkssq~lp~~g~~IrdlafSp~~~GLl~~asl~nkiki~dlet~~~vssy~a~--~~~wSC~wDlde~h~IY 252 (463)
T KOG1645|consen 175 VQKLESHDFKSSQILPGEGSFIRDLAFSPFNEGLLGLASLGNKIKIMDLETSCVVSSYIAY--NQIWSCCWDLDERHVIY 252 (463)
T ss_pred eEEeccCCcchhhcccccchhhhhhccCccccceeeeeccCceEEEEecccceeeeheecc--CCceeeeeccCCcceeE
Confidence 66676666666777788999999999999877 7888999999999999999999988875 78999999999988999
Q ss_pred EEcCCCcEEEEECCCceee-eeeec-ccccceEEEEEec------CCCEEEEEcCCCcEEEEEeeCCCCCceeEEeccCC
Q 003579 242 SGASSGVISIWNLEKRRLQ-SVIRE-AHDNAIISLHFFA------NEPVLMSASADNSIKMWIFDTTDGDPRLLRFRSGH 313 (809)
Q Consensus 242 sg~~dg~I~iwdl~~~~~~-~~~~~-~h~~~V~~l~~~~------~~~~l~s~s~d~~i~vw~~~~~~~~~~~~~~~~~h 313 (809)
.|..+|.|.|||++..+-. ..+.. -...+|..++..+ .+.+|+..+.+ +..|.+....+.+.++.. .+.
T Consensus 253 aGl~nG~VlvyD~R~~~~~~~e~~a~~t~~pv~~i~~~~~n~~f~~gglLv~~lt~--l~f~ei~~s~~~~p~vle-le~ 329 (463)
T KOG1645|consen 253 AGLQNGMVLVYDMRQPEGPLMELVANVTINPVHKIAPVQPNKIFTSGGLLVFALTV--LQFYEIVFSAECLPCVLE-LEP 329 (463)
T ss_pred EeccCceEEEEEccCCCchHhhhhhhhccCcceeecccCccccccccceEEeeehh--hhhhhhhccccCCCcccc-cCC
Confidence 9999999999999865321 11110 1234555555443 34455555443 567766554433333222 234
Q ss_pred CCCCeeEEEecCCCEEEEE
Q 003579 314 SAPPLCIRFYANGRHILSA 332 (809)
Q Consensus 314 ~~~v~~i~~~~~~~~l~s~ 332 (809)
.+...++.+++-.+.++..
T Consensus 330 pG~cismqy~~~snh~l~t 348 (463)
T KOG1645|consen 330 PGICISMQYHGVSNHLLLT 348 (463)
T ss_pred CcceeeeeecCccceEEEE
Confidence 5556667777744444443
No 314
>KOG2695 consensus WD40 repeat protein [General function prediction only]
Probab=98.66 E-value=9.8e-08 Score=92.12 Aligned_cols=155 Identities=19% Similarity=0.275 Sum_probs=123.2
Q ss_pred eCCCcEEEEECCCCceeeeeeCcccccccCccccEEEEEEcCCCCEEEEEeCcCeEEEEECCCC-----ceeeeeecCCC
Q 003579 443 TAGGWIERFNLQSGISRGSYLDMSERSNYAHNGEVVGVACDSTNTLMISAGYHGDIKVWDFKGR-----DLKSRWEVGCS 517 (809)
Q Consensus 443 ~~~g~i~i~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~l~s~~~dg~i~iwd~~~~-----~~~~~~~~~~~ 517 (809)
+.+-.+.+-|+.+|.... | ...+.|.++.|...+.++..|...|.|..+|++.+ .+...+-+.+.
T Consensus 231 G~sqqv~L~nvetg~~qs-f---------~sksDVfAlQf~~s~nLv~~GcRngeI~~iDLR~rnqG~~~~a~rlyh~Ss 300 (425)
T KOG2695|consen 231 GLSQQVLLTNVETGHQQS-F---------QSKSDVFALQFAGSDNLVFNGCRNGEIFVIDLRCRNQGNGWCAQRLYHDSS 300 (425)
T ss_pred cccceeEEEEeecccccc-c---------ccchhHHHHHhcccCCeeEecccCCcEEEEEeeecccCCCcceEEEEcCcc
Confidence 344457777877765432 1 45678889999988899999999999999999854 56677788899
Q ss_pred eEEEEEee-CCCEEEEEeCCCeEEEEEcCCCeE---EEEEecCCCCeeeE--EECCCCCEEEEEeCCCeEEEEEcCCccE
Q 003579 518 LVKIVYHR-VNGLLATVADDLVIRLFDVVALRM---VRKFEGHTDRITDF--CFSEDGKWLLSSGMDGSLRIWDVILARQ 591 (809)
Q Consensus 518 i~~~~~s~-~~~~la~~~~d~~I~v~d~~~~~~---~~~~~~h~~~I~~l--~fspdg~~l~s~s~D~~I~vwd~~~~~~ 591 (809)
++++..-. ++.+|.+.+.+|.|.+||.+--++ +.++.||...-.-+ -..+....+++++.|...|||.+.+|++
T Consensus 301 vtslq~Lq~s~q~LmaS~M~gkikLyD~R~~K~~~~V~qYeGHvN~~a~l~~~v~~eeg~I~s~GdDcytRiWsl~~ghL 380 (425)
T KOG2695|consen 301 VTSLQILQFSQQKLMASDMTGKIKLYDLRATKCKKSVMQYEGHVNLSAYLPAHVKEEEGSIFSVGDDCYTRIWSLDSGHL 380 (425)
T ss_pred hhhhhhhccccceEeeccCcCceeEeeehhhhcccceeeeecccccccccccccccccceEEEccCeeEEEEEecccCce
Confidence 99998777 788999999999999999987776 99999997654433 3456677899999999999999999999
Q ss_pred EEEeeeCcc-----eEEEEEc
Q 003579 592 IDAIHVDVS-----ITALSLS 607 (809)
Q Consensus 592 i~~~~~~~~-----v~~l~~s 607 (809)
+..+..+.. +.+++|.
T Consensus 381 l~tipf~~s~~e~d~~sv~~~ 401 (425)
T KOG2695|consen 381 LCTIPFPYSASEVDIPSVAFD 401 (425)
T ss_pred eeccCCCCccccccccceehh
Confidence 998876543 4555554
No 315
>PF07433 DUF1513: Protein of unknown function (DUF1513); InterPro: IPR008311 There are currently no experimental data for members of this group or their homologues, nor do they exhibit features indicative of any function.
Probab=98.64 E-value=2.2e-05 Score=77.59 Aligned_cols=217 Identities=12% Similarity=0.124 Sum_probs=149.9
Q ss_pred ceeEEeecCCceEEEEEeeeeeecceeeecCCCCCCCeEEEEEcCCCCEEEEEe-----CCCcEEEEECC-CCceeeeee
Q 003579 390 CNVVTCHMDTAQAYVWRLQNFVLGEHILRPCPENPTAVKACTISACGNFAVLGT-----AGGWIERFNLQ-SGISRGSYL 463 (809)
Q Consensus 390 ~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~v~~v~~s~~g~~l~~g~-----~~g~i~i~~~~-~~~~~~~~~ 463 (809)
..++.+..-...+.+||..+............. ..--..+||+||++|++.- ..|.|-+||.. +-..+.++.
T Consensus 18 ~avafaRRPG~~~~v~D~~~g~~~~~~~a~~gR--HFyGHg~fs~dG~~LytTEnd~~~g~G~IgVyd~~~~~~ri~E~~ 95 (305)
T PF07433_consen 18 EAVAFARRPGTFALVFDCRTGQLLQRLWAPPGR--HFYGHGVFSPDGRLLYTTENDYETGRGVIGVYDAARGYRRIGEFP 95 (305)
T ss_pred eEEEEEeCCCcEEEEEEcCCCceeeEEcCCCCC--EEecCEEEcCCCCEEEEeccccCCCcEEEEEEECcCCcEEEeEec
Confidence 446666677778888888877664433222211 2223568999999999864 45899999999 556666665
Q ss_pred CcccccccCccccEEEEEEcCCCCEEEEEe------------------CcCeEEEEECCCCceeeeeecC-----CCeEE
Q 003579 464 DMSERSNYAHNGEVVGVACDSTNTLMISAG------------------YHGDIKVWDFKGRDLKSRWEVG-----CSLVK 520 (809)
Q Consensus 464 ~~~~~~~~~h~~~v~~l~~~~~~~~l~s~~------------------~dg~i~iwd~~~~~~~~~~~~~-----~~i~~ 520 (809)
.|.-.-..+.+.||++.|+.+- .+-.+.+.|..+|+++.+.... ..|..
T Consensus 96 --------s~GIGPHel~l~pDG~tLvVANGGI~Thpd~GR~kLNl~tM~psL~~ld~~sG~ll~q~~Lp~~~~~lSiRH 167 (305)
T PF07433_consen 96 --------SHGIGPHELLLMPDGETLVVANGGIETHPDSGRAKLNLDTMQPSLVYLDARSGALLEQVELPPDLHQLSIRH 167 (305)
T ss_pred --------CCCcChhhEEEcCCCCEEEEEcCCCccCcccCceecChhhcCCceEEEecCCCceeeeeecCccccccceee
Confidence 6666667788999997777652 2234667788899988886542 57999
Q ss_pred EEEeeCCCEEEEEeCCC-------eEEEEEcCCCeEEEEEe-------cCCCCeeeEEECCCCCEEEEEe-CCCeEEEEE
Q 003579 521 IVYHRVNGLLATVADDL-------VIRLFDVVALRMVRKFE-------GHTDRITDFCFSEDGKWLLSSG-MDGSLRIWD 585 (809)
Q Consensus 521 ~~~s~~~~~la~~~~d~-------~I~v~d~~~~~~~~~~~-------~h~~~I~~l~fspdg~~l~s~s-~D~~I~vwd 585 (809)
+++.++|..++..-..| -+-+++.. +.+..+. .-.+.|-+|+++++|++++.+| .-+.+.+||
T Consensus 168 La~~~~G~V~~a~Q~qg~~~~~~PLva~~~~g--~~~~~~~~p~~~~~~l~~Y~gSIa~~~~g~~ia~tsPrGg~~~~~d 245 (305)
T PF07433_consen 168 LAVDGDGTVAFAMQYQGDPGDAPPLVALHRRG--GALRLLPAPEEQWRRLNGYIGSIAADRDGRLIAVTSPRGGRVAVWD 245 (305)
T ss_pred EEecCCCcEEEEEecCCCCCccCCeEEEEcCC--CcceeccCChHHHHhhCCceEEEEEeCCCCEEEEECCCCCEEEEEE
Confidence 99999987666554433 23333322 2222222 2346789999999998886555 788999999
Q ss_pred cCCccEEEEeeeCcceEEEEEcCCCCeEEEEEeCC
Q 003579 586 VILARQIDAIHVDVSITALSLSPNMDVLATAHVDQ 620 (809)
Q Consensus 586 ~~~~~~i~~~~~~~~v~~l~~spdg~~lat~~~d~ 620 (809)
..+|+++...... .+..++-.+++ |++|.+...
T Consensus 246 ~~tg~~~~~~~l~-D~cGva~~~~~-f~~ssG~G~ 278 (305)
T PF07433_consen 246 AATGRLLGSVPLP-DACGVAPTDDG-FLVSSGQGQ 278 (305)
T ss_pred CCCCCEeeccccC-ceeeeeecCCc-eEEeCCCcc
Confidence 9999999887654 36677777777 787776543
No 316
>KOG2066 consensus Vacuolar assembly/sorting protein VPS41 [Intracellular trafficking, secretion, and vesicular transport]
Probab=98.61 E-value=1.6e-06 Score=93.23 Aligned_cols=181 Identities=14% Similarity=0.156 Sum_probs=137.9
Q ss_pred CCeEEEEEcCCCCEEEEEeCCCcEEEEECCCCceeeeeeCcccccccCccccEEEEEEcCCCCEEEEEeCcCeEEEEECC
Q 003579 425 TAVKACTISACGNFAVLGTAGGWIERFNLQSGISRGSYLDMSERSNYAHNGEVVGVACDSTNTLMISAGYHGDIKVWDFK 504 (809)
Q Consensus 425 ~~v~~v~~s~~g~~l~~g~~~g~i~i~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~l~s~~~dg~i~iwd~~ 504 (809)
..++|++++ +++++.|+.+|.|++++.+... ...+ .|... +.+|.+++||+.||+|.|-.+-
T Consensus 40 D~is~~av~--~~~~~~GtH~g~v~~~~~~~~~-~~~~---------~~s~~------~~~Gey~asCS~DGkv~I~sl~ 101 (846)
T KOG2066|consen 40 DAISCCAVH--DKFFALGTHRGAVYLTTCQGNP-KTNF---------DHSSS------ILEGEYVASCSDDGKVVIGSLF 101 (846)
T ss_pred hHHHHHHhh--cceeeeccccceEEEEecCCcc-cccc---------ccccc------ccCCceEEEecCCCcEEEeecc
Confidence 344555554 6899999999999999987654 2222 34333 6689999999999999999999
Q ss_pred CCceeeeeecCCCeEEEEEeeC-----CCEEEEEeCCCeEEEEEcCC--CeEEEEEecCCCCeeeEEECCCCCEEEEEeC
Q 003579 505 GRDLKSRWEVGCSLVKIVYHRV-----NGLLATVADDLVIRLFDVVA--LRMVRKFEGHTDRITDFCFSEDGKWLLSSGM 577 (809)
Q Consensus 505 ~~~~~~~~~~~~~i~~~~~s~~-----~~~la~~~~d~~I~v~d~~~--~~~~~~~~~h~~~I~~l~fspdg~~l~s~s~ 577 (809)
+.+...++..+.++.+++++|+ .+.+++|+.-| +.++.-.= .+.-..+..-.++|.++.|. |.++|-++.
T Consensus 102 ~~~~~~~~df~rpiksial~Pd~~~~~sk~fv~GG~ag-lvL~er~wlgnk~~v~l~~~eG~I~~i~W~--g~lIAWand 178 (846)
T KOG2066|consen 102 TDDEITQYDFKRPIKSIALHPDFSRQQSKQFVSGGMAG-LVLSERNWLGNKDSVVLSEGEGPIHSIKWR--GNLIAWAND 178 (846)
T ss_pred CCccceeEecCCcceeEEeccchhhhhhhheeecCcce-EEEehhhhhcCccceeeecCccceEEEEec--CcEEEEecC
Confidence 9999999999999999999998 56888888888 77764321 11111455567899999995 669999988
Q ss_pred CCeEEEEEcCCccEEEEeeeCcc-------eEEEEEcCCCCeEEEEEeCCCeEEEeecCc
Q 003579 578 DGSLRIWDVILARQIDAIHVDVS-------ITALSLSPNMDVLATAHVDQNGVYLWVNRC 630 (809)
Q Consensus 578 D~~I~vwd~~~~~~i~~~~~~~~-------v~~l~~spdg~~lat~~~d~~~i~lW~~~~ 630 (809)
+| |+|||+.+++.+..+..+.. ...+.|.++. .|+.|-.| +|+|-.++.
T Consensus 179 ~G-v~vyd~~~~~~l~~i~~p~~~~R~e~fpphl~W~~~~-~LVIGW~d--~v~i~~I~~ 234 (846)
T KOG2066|consen 179 DG-VKVYDTPTRQRLTNIPPPSQSVRPELFPPHLHWQDED-RLVIGWGD--SVKICSIKK 234 (846)
T ss_pred CC-cEEEeccccceeeccCCCCCCCCcccCCCceEecCCC-eEEEecCC--eEEEEEEec
Confidence 88 89999999998877764332 5678887655 56666556 489988873
No 317
>PF06433 Me-amine-dh_H: Methylamine dehydrogenase heavy chain (MADH); InterPro: IPR009451 Methylamine dehydrogenase (1.4.99.3 from EC) is a periplasmic quinoprotein found in several methyltrophic bacteria []. It is induced when grown on methylamine as a carbon source MADH and catalyses the oxidative deamination of amines to their corresponding aldehydes. The redox cofactor of this enzyme is tryptophan tryptophylquinone (TTQ). Electrons derived from the oxidation of methylamine are passed to an electron acceptor, which is usually the blue-copper protein amicyanin (IPR002386 from INTERPRO). RCH2NH2 + H2O + acceptor = RCHO + NH3 + reduced acceptor MADH is a hetero-tetramer, comprised of two heavy subunits and two light subunits. The heavy subunit forms a seven-bladed beta-propeller like structure [].; GO: 0030058 amine dehydrogenase activity, 0030416 methylamine metabolic process, 0055114 oxidation-reduction process, 0042597 periplasmic space; PDB: 3RN1_F 3SVW_F 3PXT_F 3L4O_F 3L4M_D 3SJL_F 3PXS_D 3ORV_F 3RMZ_F 3RLM_F ....
Probab=98.60 E-value=4.4e-05 Score=76.35 Aligned_cols=273 Identities=13% Similarity=0.185 Sum_probs=154.1
Q ss_pred CcEEEEECCCceeeeeeecccccceEEEEEecCCCEEEEEc----------CCCcEEEEEeeCCCCCceeEEeccCC---
Q 003579 247 GVISIWNLEKRRLQSVIREAHDNAIISLHFFANEPVLMSAS----------ADNSIKMWIFDTTDGDPRLLRFRSGH--- 313 (809)
Q Consensus 247 g~I~iwdl~~~~~~~~~~~~h~~~V~~l~~~~~~~~l~s~s----------~d~~i~vw~~~~~~~~~~~~~~~~~h--- 313 (809)
+.+.++|..+++.+..+..+.. -.+..+|+++.+++++ ..-.|.+||..+-.....+. ...+|
T Consensus 17 ~rv~viD~d~~k~lGmi~~g~~---~~~~~spdgk~~y~a~T~~sR~~rG~RtDvv~~~D~~TL~~~~EI~-iP~k~R~~ 92 (342)
T PF06433_consen 17 SRVYVIDADSGKLLGMIDTGFL---GNVALSPDGKTIYVAETFYSRGTRGERTDVVEIWDTQTLSPTGEIE-IPPKPRAQ 92 (342)
T ss_dssp EEEEEEETTTTEEEEEEEEESS---EEEEE-TTSSEEEEEEEEEEETTEEEEEEEEEEEETTTTEEEEEEE-ETTS-B--
T ss_pred ceEEEEECCCCcEEEEeecccC---CceeECCCCCEEEEEEEEEeccccccceeEEEEEecCcCcccceEe-cCCcchhe
Confidence 4799999999999999884443 3466789999888754 23468889766543222111 11111
Q ss_pred -CCCCeeEEEecCCCEEEEEE--CCCCEEEEEeeecccceecchhhHHHHHhhccchhhhhccCceeEEeeccccccccc
Q 003579 314 -SAPPLCIRFYANGRHILSAG--QDRAFRLFSVIQDQQSRELSQRHVAKRARKLKMKEEELKLKPVIAFDCAEIRERDWC 390 (809)
Q Consensus 314 -~~~v~~i~~~~~~~~l~s~~--~dg~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~ 390 (809)
......++++.||++++... -..+|.+.|+...+...++...
T Consensus 93 ~~~~~~~~~ls~dgk~~~V~N~TPa~SVtVVDl~~~kvv~ei~~P----------------------------------- 137 (342)
T PF06433_consen 93 VVPYKNMFALSADGKFLYVQNFTPATSVTVVDLAAKKVVGEIDTP----------------------------------- 137 (342)
T ss_dssp BS--GGGEEE-TTSSEEEEEEESSSEEEEEEETTTTEEEEEEEGT-----------------------------------
T ss_pred ecccccceEEccCCcEEEEEccCCCCeEEEEECCCCceeeeecCC-----------------------------------
Confidence 12334567777888777643 2345666776655544443221
Q ss_pred eeEEeecCCceEEEEEeeeeeecceeeecCCCCCCCeEEEEEcCCCCEEEEEeCCCcEEEEECC-CCceeeeeeCccccc
Q 003579 391 NVVTCHMDTAQAYVWRLQNFVLGEHILRPCPENPTAVKACTISACGNFAVLGTAGGWIERFNLQ-SGISRGSYLDMSERS 469 (809)
Q Consensus 391 ~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~v~~v~~s~~g~~l~~g~~~g~i~i~~~~-~~~~~~~~~~~~~~~ 469 (809)
++..+|. +.. +-+..-+.||.+..+.+. .|+....... .-
T Consensus 138 ---------GC~~iyP--------------------------~~~-~~F~~lC~DGsl~~v~Ld~~Gk~~~~~t~---~F 178 (342)
T PF06433_consen 138 ---------GCWLIYP--------------------------SGN-RGFSMLCGDGSLLTVTLDADGKEAQKSTK---VF 178 (342)
T ss_dssp ---------SEEEEEE--------------------------EET-TEEEEEETTSCEEEEEETSTSSEEEEEEE---ES
T ss_pred ---------CEEEEEe--------------------------cCC-CceEEEecCCceEEEEECCCCCEeEeecc---cc
Confidence 1111111 111 234455666766666665 3333211110 00
Q ss_pred ccCccccEEEEEEcCCCCEEEEEeCcCeEEEEECCCCceee--eeec-----------CCCeEEEEEeeCCCEEEEEeCC
Q 003579 470 NYAHNGEVVGVACDSTNTLMISAGYHGDIKVWDFKGRDLKS--RWEV-----------GCSLVKIVYHRVNGLLATVADD 536 (809)
Q Consensus 470 ~~~h~~~v~~l~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~--~~~~-----------~~~i~~~~~s~~~~~la~~~~d 536 (809)
...+..-...-++...+..++-.+.+|.|+--|+....... .+.. .+.-.-+++++..+.|.+....
T Consensus 179 ~~~~dp~f~~~~~~~~~~~~~F~Sy~G~v~~~dlsg~~~~~~~~~~~~t~~e~~~~WrPGG~Q~~A~~~~~~rlyvLMh~ 258 (342)
T PF06433_consen 179 DPDDDPLFEHPAYSRDGGRLYFVSYEGNVYSADLSGDSAKFGKPWSLLTDAEKADGWRPGGWQLIAYHAASGRLYVLMHQ 258 (342)
T ss_dssp STTTS-B-S--EEETTTTEEEEEBTTSEEEEEEETTSSEEEEEEEESS-HHHHHTTEEE-SSS-EEEETTTTEEEEEEEE
T ss_pred CCCCcccccccceECCCCeEEEEecCCEEEEEeccCCcccccCcccccCccccccCcCCcceeeeeeccccCeEEEEecC
Confidence 01111122233444455555557788888888887664322 2211 1344567888877666554321
Q ss_pred ----------CeEEEEEcCCCeEEEEEecCCCCeeeEEECCCCC-EEEEE-eCCCeEEEEEcCCccEEEEeeeC
Q 003579 537 ----------LVIRLFDVVALRMVRKFEGHTDRITDFCFSEDGK-WLLSS-GMDGSLRIWDVILARQIDAIHVD 598 (809)
Q Consensus 537 ----------~~I~v~d~~~~~~~~~~~~h~~~I~~l~fspdg~-~l~s~-s~D~~I~vwd~~~~~~i~~~~~~ 598 (809)
..|.++|+.+++.++++.. ..++.+|+.+.|.+ +|++. ..++.+.+||..+|+++..+..-
T Consensus 259 g~~gsHKdpgteVWv~D~~t~krv~Ri~l-~~~~~Si~Vsqd~~P~L~~~~~~~~~l~v~D~~tGk~~~~~~~l 331 (342)
T PF06433_consen 259 GGEGSHKDPGTEVWVYDLKTHKRVARIPL-EHPIDSIAVSQDDKPLLYALSAGDGTLDVYDAATGKLVRSIEQL 331 (342)
T ss_dssp --TT-TTS-EEEEEEEETTTTEEEEEEEE-EEEESEEEEESSSS-EEEEEETTTTEEEEEETTT--EEEEE---
T ss_pred CCCCCccCCceEEEEEECCCCeEEEEEeC-CCccceEEEccCCCcEEEEEcCCCCeEEEEeCcCCcEEeehhcc
Confidence 2688999999999999874 24688999999876 56554 46899999999999999988743
No 318
>PRK02888 nitrous-oxide reductase; Validated
Probab=98.60 E-value=8.6e-06 Score=87.83 Aligned_cols=104 Identities=21% Similarity=0.261 Sum_probs=75.1
Q ss_pred ccccEEEEEEcCCCCEEEEEe-CcCeEEEEECCCCc------------eeeeeecCCCeEEEEEeeCCCEEEEEeCCCeE
Q 003579 473 HNGEVVGVACDSTNTLMISAG-YHGDIKVWDFKGRD------------LKSRWEVGCSLVKIVYHRVNGLLATVADDLVI 539 (809)
Q Consensus 473 h~~~v~~l~~~~~~~~l~s~~-~dg~i~iwd~~~~~------------~~~~~~~~~~i~~~~~s~~~~~la~~~~d~~I 539 (809)
-.....++.++|||+++++++ .+.+|.+.|+.+.+ ...+.+........+|.++|....+-.-|..|
T Consensus 319 VGKsPHGV~vSPDGkylyVanklS~tVSVIDv~k~k~~~~~~~~~~~~vvaevevGlGPLHTaFDg~G~aytslf~dsqv 398 (635)
T PRK02888 319 VPKNPHGVNTSPDGKYFIANGKLSPTVTVIDVRKLDDLFDGKIKPRDAVVAEPELGLGPLHTAFDGRGNAYTTLFLDSQI 398 (635)
T ss_pred CCCCccceEECCCCCEEEEeCCCCCcEEEEEChhhhhhhhccCCccceEEEeeccCCCcceEEECCCCCEEEeEeeccee
Confidence 345567788888888777665 57888888887754 35556666677788999999888888889999
Q ss_pred EEEEcCC----------CeEEEEEecCCCCee-----eEEECCCCCEEEEEe
Q 003579 540 RLFDVVA----------LRMVRKFEGHTDRIT-----DFCFSEDGKWLLSSG 576 (809)
Q Consensus 540 ~v~d~~~----------~~~~~~~~~h~~~I~-----~l~fspdg~~l~s~s 576 (809)
..||+.+ ...+.++.-|-.+.. .=.-.|||+||++..
T Consensus 399 ~kwn~~~a~~~~~g~~~~~v~~k~dV~y~pgh~~~~~g~t~~~dgk~l~~~n 450 (635)
T PRK02888 399 VKWNIEAAIRAYKGEKVDPIVQKLDVHYQPGHNHASMGETKEADGKWLVSLN 450 (635)
T ss_pred EEEehHHHHHHhccccCCcceecccCCCccceeeecCCCcCCCCCCEEEEcc
Confidence 9999986 345665654443322 223478999999874
No 319
>PF07433 DUF1513: Protein of unknown function (DUF1513); InterPro: IPR008311 There are currently no experimental data for members of this group or their homologues, nor do they exhibit features indicative of any function.
Probab=98.58 E-value=2.1e-05 Score=77.62 Aligned_cols=197 Identities=12% Similarity=0.155 Sum_probs=143.8
Q ss_pred CCeEEEEEcC-CCCEEEEEeCCC-cEEEEECCCCceeeeeeCcccccccCccccEEEEEEcCCCCEEEEEeC-----cCe
Q 003579 425 TAVKACTISA-CGNFAVLGTAGG-WIERFNLQSGISRGSYLDMSERSNYAHNGEVVGVACDSTNTLMISAGY-----HGD 497 (809)
Q Consensus 425 ~~v~~v~~s~-~g~~l~~g~~~g-~i~i~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~l~s~~~-----dg~ 497 (809)
.....++.+| .+..++++-.-| ...+||.+++.....+.....+-+++| -+|++||++|++.-. .|.
T Consensus 5 ~RgH~~a~~p~~~~avafaRRPG~~~~v~D~~~g~~~~~~~a~~gRHFyGH------g~fs~dG~~LytTEnd~~~g~G~ 78 (305)
T PF07433_consen 5 ARGHGVAAHPTRPEAVAFARRPGTFALVFDCRTGQLLQRLWAPPGRHFYGH------GVFSPDGRLLYTTENDYETGRGV 78 (305)
T ss_pred ccccceeeCCCCCeEEEEEeCCCcEEEEEEcCCCceeeEEcCCCCCEEecC------EEEcCCCCEEEEeccccCCCcEE
Confidence 4556778888 567777777776 567899999999888775554445555 479999999998753 488
Q ss_pred EEEEECC-CCceeeeeecC-CCeEEEEEeeCCCEEEEEeC------------------CCeEEEEEcCCCeEEEE--E--
Q 003579 498 IKVWDFK-GRDLKSRWEVG-CSLVKIVYHRVNGLLATVAD------------------DLVIRLFDVVALRMVRK--F-- 553 (809)
Q Consensus 498 i~iwd~~-~~~~~~~~~~~-~~i~~~~~s~~~~~la~~~~------------------d~~I~v~d~~~~~~~~~--~-- 553 (809)
|-|||.. +-+.+.++..+ -....+.+.||++.|+++.. +-++...|..+|+++.+ +
T Consensus 79 IgVyd~~~~~~ri~E~~s~GIGPHel~l~pDG~tLvVANGGI~Thpd~GR~kLNl~tM~psL~~ld~~sG~ll~q~~Lp~ 158 (305)
T PF07433_consen 79 IGVYDAARGYRRIGEFPSHGIGPHELLLMPDGETLVVANGGIETHPDSGRAKLNLDTMQPSLVYLDARSGALLEQVELPP 158 (305)
T ss_pred EEEEECcCCcEEEeEecCCCcChhhEEEcCCCCEEEEEcCCCccCcccCceecChhhcCCceEEEecCCCceeeeeecCc
Confidence 9999999 55666666554 45677889999988887632 23567778889988877 4
Q ss_pred ecCCCCeeeEEECCCCCEEEEEeCCC-------eEEEEEcCCccEEEEee--------eCcceEEEEEcCCCCeEEEEEe
Q 003579 554 EGHTDRITDFCFSEDGKWLLSSGMDG-------SLRIWDVILARQIDAIH--------VDVSITALSLSPNMDVLATAHV 618 (809)
Q Consensus 554 ~~h~~~I~~l~fspdg~~l~s~s~D~-------~I~vwd~~~~~~i~~~~--------~~~~v~~l~~spdg~~lat~~~ 618 (809)
.-|...|..+++.++|..++..-..| .|.+++- ++.+..+. ....+-+|+++++|.+++.++-
T Consensus 159 ~~~~lSiRHLa~~~~G~V~~a~Q~qg~~~~~~PLva~~~~--g~~~~~~~~p~~~~~~l~~Y~gSIa~~~~g~~ia~tsP 236 (305)
T PF07433_consen 159 DLHQLSIRHLAVDGDGTVAFAMQYQGDPGDAPPLVALHRR--GGALRLLPAPEEQWRRLNGYIGSIAADRDGRLIAVTSP 236 (305)
T ss_pred cccccceeeEEecCCCcEEEEEecCCCCCccCCeEEEEcC--CCcceeccCChHHHHhhCCceEEEEEeCCCCEEEEECC
Confidence 33788999999999998666543332 2334443 33333333 2345999999999999999888
Q ss_pred CCCeEEEeecC
Q 003579 619 DQNGVYLWVNR 629 (809)
Q Consensus 619 d~~~i~lW~~~ 629 (809)
-++.+.+|+..
T Consensus 237 rGg~~~~~d~~ 247 (305)
T PF07433_consen 237 RGGRVAVWDAA 247 (305)
T ss_pred CCCEEEEEECC
Confidence 88889999764
No 320
>KOG3617 consensus WD40 and TPR repeat-containing protein [General function prediction only]
Probab=98.53 E-value=2e-06 Score=92.49 Aligned_cols=112 Identities=21% Similarity=0.313 Sum_probs=89.7
Q ss_pred EEEEEEcCCCCEEEEEeC----CCeEEEEEeeCCeEEEEEeccCCCcEEEEEEecCCCCEEEEEcCCCcEEEEECCCcee
Q 003579 184 ISSCVSSPALDVVAVGCS----DGKIHVHNVRYDEELVTFTHSMRGAVTALAFSSDGQPLLASGASSGVISIWNLEKRRL 259 (809)
Q Consensus 184 I~~l~~sp~~~~la~g~~----dg~i~iwd~~~~~~~~~~~~~~~~~V~~l~fs~dg~~~lasg~~dg~I~iwdl~~~~~ 259 (809)
-+-..|+|...++|+++- .|.|.||- ++|++-..... .-.+++++|+|..- +|+.|-.-|.+.+|...+.+.
T Consensus 18 sti~SWHPsePlfAVA~fS~er~GSVtIfa-dtGEPqr~Vt~--P~hatSLCWHpe~~-vLa~gwe~g~~~v~~~~~~e~ 93 (1416)
T KOG3617|consen 18 STISSWHPSEPLFAVASFSPERGGSVTIFA-DTGEPQRDVTY--PVHATSLCWHPEEF-VLAQGWEMGVSDVQKTNTTET 93 (1416)
T ss_pred ccccccCCCCceeEEEEecCCCCceEEEEe-cCCCCCccccc--ceehhhhccChHHH-HHhhccccceeEEEecCCcee
Confidence 344578999999998864 48888885 56665444332 23578899999876 899999999999999877666
Q ss_pred eeeeecccccceEEEEEecCCCEEEEEcCCCcEEEEEeeCC
Q 003579 260 QSVIREAHDNAIISLHFFANEPVLMSASADNSIKMWIFDTT 300 (809)
Q Consensus 260 ~~~~~~~h~~~V~~l~~~~~~~~l~s~s~d~~i~vw~~~~~ 300 (809)
..... .|..+|..+.|+++|..|+++..-|.+.+|.++..
T Consensus 94 htv~~-th~a~i~~l~wS~~G~~l~t~d~~g~v~lwr~d~~ 133 (1416)
T KOG3617|consen 94 HTVVE-THPAPIQGLDWSHDGTVLMTLDNPGSVHLWRYDVI 133 (1416)
T ss_pred eeecc-CCCCCceeEEecCCCCeEEEcCCCceeEEEEeeec
Confidence 55554 89999999999999999999999999999988754
No 321
>cd00216 PQQ_DH Dehydrogenases with pyrrolo-quinoline quinone (PQQ) as cofactor, like ethanol, methanol, and membrane bound glucose dehydrogenases. The alignment model contains an 8-bladed beta-propeller.
Probab=98.51 E-value=0.00012 Score=81.04 Aligned_cols=194 Identities=13% Similarity=0.166 Sum_probs=113.7
Q ss_pred CEEEEEeCCCeEEEEeCCCCceEEEEcCCCC------CEEE--EEEcCCCCEEEEEeCCCeEEEEEeeCCeEEEEEeccC
Q 003579 152 NKVIVGSQEGSLQLWNISTKKKLYEFKGWGS------SISS--CVSSPALDVVAVGCSDGKIHVHNVRYDEELVTFTHSM 223 (809)
Q Consensus 152 ~~l~~~~~dg~i~lwd~~~~~~~~~~~~~~~------~I~~--l~~sp~~~~la~g~~dg~i~iwd~~~~~~~~~~~~~~ 223 (809)
+++++++.++.|.-.|.++|+.+.++..... .+.. +... ++..+++++.+|.|.-+|.++|+.+-++....
T Consensus 62 g~vy~~~~~g~l~AlD~~tG~~~W~~~~~~~~~~~~~~~~~~g~~~~-~~~~V~v~~~~g~v~AlD~~TG~~~W~~~~~~ 140 (488)
T cd00216 62 GDMYFTTSHSALFALDAATGKVLWRYDPKLPADRGCCDVVNRGVAYW-DPRKVFFGTFDGRLVALDAETGKQVWKFGNND 140 (488)
T ss_pred CEEEEeCCCCcEEEEECCCChhhceeCCCCCccccccccccCCcEEc-cCCeEEEecCCCeEEEEECCCCCEeeeecCCC
Confidence 5788898999999999999999988764332 0100 1111 22688889999999999999999998877542
Q ss_pred CC----cE-EEEEEecCCCCEEEEEc---------CCCcEEEEECCCceeeeeeeccccc-------------------c
Q 003579 224 RG----AV-TALAFSSDGQPLLASGA---------SSGVISIWNLEKRRLQSVIREAHDN-------------------A 270 (809)
Q Consensus 224 ~~----~V-~~l~fs~dg~~~lasg~---------~dg~I~iwdl~~~~~~~~~~~~h~~-------------------~ 270 (809)
.. .+ .+..+. ++ +++.++ .+|.+..+|.++|+.+......+.. .
T Consensus 141 ~~~~~~~i~ssP~v~-~~--~v~vg~~~~~~~~~~~~g~v~alD~~TG~~~W~~~~~~~~~~~~~~~~~~~~~~~~~g~~ 217 (488)
T cd00216 141 QVPPGYTMTGAPTIV-KK--LVIIGSSGAEFFACGVRGALRAYDVETGKLLWRFYTTEPDPNAFPTWGPDRQMWGPGGGT 217 (488)
T ss_pred CcCcceEecCCCEEE-CC--EEEEeccccccccCCCCcEEEEEECCCCceeeEeeccCCCcCCCCCCCCCcceecCCCCC
Confidence 11 01 112222 23 455554 3678999999999988877632211 0
Q ss_pred e-EEEEEecCCCEEEEEcCCC------------------cEEEEEeeCCCCCceeEEeccCCCC----CCeeEEEe----
Q 003579 271 I-ISLHFFANEPVLMSASADN------------------SIKMWIFDTTDGDPRLLRFRSGHSA----PPLCIRFY---- 323 (809)
Q Consensus 271 V-~~l~~~~~~~~l~s~s~d~------------------~i~vw~~~~~~~~~~~~~~~~~h~~----~v~~i~~~---- 323 (809)
+ .+..+.+.+..++.++.++ .|.-.|..+. ...-......|.. ......+.
T Consensus 218 vw~~pa~d~~~g~V~vg~~~g~~~~~~~~~~~~~~~~~~~l~Ald~~tG--~~~W~~~~~~~~~~~~~~~s~p~~~~~~~ 295 (488)
T cd00216 218 SWASPTYDPKTNLVYVGTGNGSPWNWGGRRTPGDNLYTDSIVALDADTG--KVKWFYQTTPHDLWDYDGPNQPSLADIKP 295 (488)
T ss_pred ccCCeeEeCCCCEEEEECCCCCCCccCCccCCCCCCceeeEEEEcCCCC--CEEEEeeCCCCCCcccccCCCCeEEeccc
Confidence 1 1234444556777776555 4554444433 2222221122211 00001111
Q ss_pred cCCC---EEEEEECCCCEEEEEeeeccccee
Q 003579 324 ANGR---HILSAGQDRAFRLFSVIQDQQSRE 351 (809)
Q Consensus 324 ~~~~---~l~s~~~dg~i~~wd~~~~~~~~~ 351 (809)
-++. .++.++.+|.+..+|..+++..-+
T Consensus 296 ~~g~~~~~V~~g~~~G~l~ald~~tG~~~W~ 326 (488)
T cd00216 296 KDGKPVPAIVHAPKNGFFYVLDRTTGKLISA 326 (488)
T ss_pred cCCCeeEEEEEECCCceEEEEECCCCcEeeE
Confidence 1332 567777889899888887765443
No 322
>cd00216 PQQ_DH Dehydrogenases with pyrrolo-quinoline quinone (PQQ) as cofactor, like ethanol, methanol, and membrane bound glucose dehydrogenases. The alignment model contains an 8-bladed beta-propeller.
Probab=98.50 E-value=0.00043 Score=76.62 Aligned_cols=176 Identities=16% Similarity=0.147 Sum_probs=110.8
Q ss_pred EEEEcCCCCEEEEEeCCC------------------cEEEEECCCCceeeeeeCccccc--ccCccccE-EEEEEcCCCC
Q 003579 429 ACTISACGNFAVLGTAGG------------------WIERFNLQSGISRGSYLDMSERS--NYAHNGEV-VGVACDSTNT 487 (809)
Q Consensus 429 ~v~~s~~g~~l~~g~~~g------------------~i~i~~~~~~~~~~~~~~~~~~~--~~~h~~~v-~~l~~~~~~~ 487 (809)
+.++.+.+..+++++.++ .+.-+|..+|+.+..+....... ......++ ..+. .-++.
T Consensus 221 ~pa~d~~~g~V~vg~~~g~~~~~~~~~~~~~~~~~~~l~Ald~~tG~~~W~~~~~~~~~~~~~~~s~p~~~~~~-~~~g~ 299 (488)
T cd00216 221 SPTYDPKTNLVYVGTGNGSPWNWGGRRTPGDNLYTDSIVALDADTGKVKWFYQTTPHDLWDYDGPNQPSLADIK-PKDGK 299 (488)
T ss_pred CeeEeCCCCEEEEECCCCCCCccCCccCCCCCCceeeEEEEcCCCCCEEEEeeCCCCCCcccccCCCCeEEecc-ccCCC
Confidence 345666778888888765 79999999999998875311100 00111111 1111 11232
Q ss_pred ---EEEEEeCcCeEEEEECCCCceeeeeecCCCeEEEEEeeCCCEEEEE------------------eCCCeEEEEEcCC
Q 003579 488 ---LMISAGYHGDIKVWDFKGRDLKSRWEVGCSLVKIVYHRVNGLLATV------------------ADDLVIRLFDVVA 546 (809)
Q Consensus 488 ---~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~i~~~~~s~~~~~la~~------------------~~d~~I~v~d~~~ 546 (809)
.++.++.+|.+...|..+|+.+....... ..++.+| ..+.++ ..+|.+.-+|..+
T Consensus 300 ~~~~V~~g~~~G~l~ald~~tG~~~W~~~~~~--~~~~~~~--~~vyv~~~~~~~~~~~~~~~~~~~~~~G~l~AlD~~t 375 (488)
T cd00216 300 PVPAIVHAPKNGFFYVLDRTTGKLISARPEVE--QPMAYDP--GLVYLGAFHIPLGLPPQKKKRCKKPGKGGLAALDPKT 375 (488)
T ss_pred eeEEEEEECCCceEEEEECCCCcEeeEeEeec--cccccCC--ceEEEccccccccCcccccCCCCCCCceEEEEEeCCC
Confidence 57778889999999999999987765431 1223333 333332 2367899999999
Q ss_pred CeEEEEEecCC--------CCe--eeEEECCCCCEEEEEeCCCeEEEEEcCCccEEEEeeeCcceEE--EEEcCCCC
Q 003579 547 LRMVRKFEGHT--------DRI--TDFCFSEDGKWLLSSGMDGSLRIWDVILARQIDAIHVDVSITA--LSLSPNMD 611 (809)
Q Consensus 547 ~~~~~~~~~h~--------~~I--~~l~fspdg~~l~s~s~D~~I~vwd~~~~~~i~~~~~~~~v~~--l~~spdg~ 611 (809)
++.+-+..... .+. ..+.. .+..|+.++.||.|+.+|..+|+.+-.++....+.+ +.+..+|+
T Consensus 376 G~~~W~~~~~~~~~~~~~g~~~~~~~~~~--~g~~v~~g~~dG~l~ald~~tG~~lW~~~~~~~~~a~P~~~~~~g~ 450 (488)
T cd00216 376 GKVVWEKREGTIRDSWNIGFPHWGGSLAT--AGNLVFAGAADGYFRAFDATTGKELWKFRTPSGIQATPMTYEVNGK 450 (488)
T ss_pred CcEeeEeeCCccccccccCCcccCcceEe--cCCeEEEECCCCeEEEEECCCCceeeEEECCCCceEcCEEEEeCCE
Confidence 98877765331 111 11222 456888889999999999999999998887665432 23344554
No 323
>KOG2695 consensus WD40 repeat protein [General function prediction only]
Probab=98.49 E-value=4.9e-07 Score=87.43 Aligned_cols=123 Identities=15% Similarity=0.223 Sum_probs=99.2
Q ss_pred CCeEEEEEcCCCCEEEEEeCCCcEEEEECCCCc-----eeeeeeCcccccccCccccEEEEEEcC-CCCEEEEEeCcCeE
Q 003579 425 TAVKACTISACGNFAVLGTAGGWIERFNLQSGI-----SRGSYLDMSERSNYAHNGEVVGVACDS-TNTLMISAGYHGDI 498 (809)
Q Consensus 425 ~~v~~v~~s~~g~~l~~g~~~g~i~i~~~~~~~-----~~~~~~~~~~~~~~~h~~~v~~l~~~~-~~~~l~s~~~dg~i 498 (809)
+.|-++.|...++.+..|+.+|.|..+|++.+. ....+ -|...|+++..-. ++++|++.+.+|+|
T Consensus 253 sDVfAlQf~~s~nLv~~GcRngeI~~iDLR~rnqG~~~~a~rl---------yh~Ssvtslq~Lq~s~q~LmaS~M~gki 323 (425)
T KOG2695|consen 253 SDVFALQFAGSDNLVFNGCRNGEIFVIDLRCRNQGNGWCAQRL---------YHDSSVTSLQILQFSQQKLMASDMTGKI 323 (425)
T ss_pred hhHHHHHhcccCCeeEecccCCcEEEEEeeecccCCCcceEEE---------EcCcchhhhhhhccccceEeeccCcCce
Confidence 567777788889999999999999999998762 22222 6899999999877 78999999999999
Q ss_pred EEEECCCCce---eeeeecC---CCeEEEEEeeCCCEEEEEeCCCeEEEEEcCCCeEEEEEecC
Q 003579 499 KVWDFKGRDL---KSRWEVG---CSLVKIVYHRVNGLLATVADDLVIRLFDVVALRMVRKFEGH 556 (809)
Q Consensus 499 ~iwd~~~~~~---~~~~~~~---~~i~~~~~s~~~~~la~~~~d~~I~v~d~~~~~~~~~~~~h 556 (809)
++||.+--++ +.+++.+ ..-.-+..++....++++++|...|||.++.+.++.++.-.
T Consensus 324 kLyD~R~~K~~~~V~qYeGHvN~~a~l~~~v~~eeg~I~s~GdDcytRiWsl~~ghLl~tipf~ 387 (425)
T KOG2695|consen 324 KLYDLRATKCKKSVMQYEGHVNLSAYLPAHVKEEEGSIFSVGDDCYTRIWSLDSGHLLCTIPFP 387 (425)
T ss_pred eEeeehhhhcccceeeeecccccccccccccccccceEEEccCeeEEEEEecccCceeeccCCC
Confidence 9999986666 6677665 23334456677889999999999999999999999887643
No 324
>KOG1920 consensus IkappaB kinase complex, IKAP component [Transcription]
Probab=98.49 E-value=0.0019 Score=73.77 Aligned_cols=277 Identities=12% Similarity=0.105 Sum_probs=167.3
Q ss_pred CCCCCCcEEEEEeCCeEEEEECCe-----EEEEEC---Ce---eEEEEc--cccccEEEEEE--eCCEEEEEeCCCcEEE
Q 003579 53 PQLPKKIRALASYRDYTFAAYGNH-----IAVVKR---AH---QVATWS--RHSAKVNLLLL--FGEHILSIDIDGNMFI 117 (809)
Q Consensus 53 ~~~~~~I~~la~~~~~~~~a~g~~-----i~vw~~---~~---~~~~~~--~h~~~V~~l~~--~g~~l~s~~~dg~i~v 117 (809)
..++..-.+...+|...++|++.. +..+.. ++ ....+. .-.+.|.++.+ ++..++.+..+|.|.+
T Consensus 15 ~~~~~~~~~f~l~~~~~~~ass~~~~~~~~~~~ei~~~~kv~~~~~s~~~~~gd~~i~s~~fl~d~~~i~v~~~~G~iil 94 (1265)
T KOG1920|consen 15 VAGPGNAQAFILSPELVTVASSTINELLGLKIFEIESVGKVRLVAESFLPEDGDDEIVSVQFLADTNSICVITALGDIIL 94 (1265)
T ss_pred cCCCCchhheeeccccceeeeceeeecccccceeeeccccccceeecccCcCCCcceEEEEEecccceEEEEecCCcEEE
Confidence 345555667788888888888843 333322 22 111121 22358888887 6788888889999998
Q ss_pred EEcCCCccccceeeeEEcCCccccEEEEeCCCCCCEEEEEeCCCeEEEEeC----CC-------------------CceE
Q 003579 118 WAFKGIEENLAPVGHVKLDDKFTPTCIMHPDTYLNKVIVGSQEGSLQLWNI----ST-------------------KKKL 174 (809)
Q Consensus 118 Wd~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~l~~~~~dg~i~lwd~----~~-------------------~~~~ 174 (809)
-|.++... .....-...+..+.++|+. ..++..+..+++.+-.- -. |+.-
T Consensus 95 vd~et~~~-----eivg~vd~GI~aaswS~De--e~l~liT~~~tll~mT~~f~~i~E~~L~~d~~~~sk~v~VGwGrke 167 (1265)
T KOG1920|consen 95 VDPETLEL-----EIVGNVDNGISAASWSPDE--ELLALITGRQTLLFMTKDFEPIAEKPLDADDERKSKFVNVGWGRKE 167 (1265)
T ss_pred Ecccccce-----eeeeeccCceEEEeecCCC--cEEEEEeCCcEEEEEeccccchhccccccccccccccceecccccc
Confidence 87776544 1222234556677799999 78888888887776532 01 1111
Q ss_pred EEEcCC---------------------CCCEEEEEEcCCCCEEEEE-----eCCCeEEEEEeeCCeEEEEEeccCCCcEE
Q 003579 175 YEFKGW---------------------GSSISSCVSSPALDVVAVG-----CSDGKIHVHNVRYDEELVTFTHSMRGAVT 228 (809)
Q Consensus 175 ~~~~~~---------------------~~~I~~l~~sp~~~~la~g-----~~dg~i~iwd~~~~~~~~~~~~~~~~~V~ 228 (809)
..|.|. .+.=+++.|--||+++|+. .....|++||-+ | .+........+.-.
T Consensus 168 Tqfrgs~gr~~~~~~~~~ek~~~~~~~~~~~~~IsWRgDg~~fAVs~~~~~~~~RkirV~drE-g-~Lns~se~~~~l~~ 245 (1265)
T KOG1920|consen 168 TQFRGSEGRQAARQKIEKEKALEQIEQDDHKTSISWRGDGEYFAVSFVESETGTRKIRVYDRE-G-ALNSTSEPVEGLQH 245 (1265)
T ss_pred eeeecchhhhcccccccccccccchhhccCCceEEEccCCcEEEEEEEeccCCceeEEEeccc-c-hhhcccCccccccc
Confidence 122211 1122458899999999984 223789999976 3 33333333245567
Q ss_pred EEEEecCCCCEEEEEc---CCCcEEEEECCCc---eeeeeeecccccceEEEEEecCCCEEEE---EcCCCcEEEEEeeC
Q 003579 229 ALAFSSDGQPLLASGA---SSGVISIWNLEKR---RLQSVIREAHDNAIISLHFFANEPVLMS---ASADNSIKMWIFDT 299 (809)
Q Consensus 229 ~l~fs~dg~~~lasg~---~dg~I~iwdl~~~---~~~~~~~~~h~~~V~~l~~~~~~~~l~s---~s~d~~i~vw~~~~ 299 (809)
+++|.|.|. ++|+-. +++.|.++.-+.- ....... .....|..++|+.++..|++ ......|++|-+.
T Consensus 246 ~LsWkPsgs-~iA~iq~~~sd~~IvffErNGL~hg~f~l~~p-~de~~ve~L~Wns~sdiLAv~~~~~e~~~v~lwt~~- 322 (1265)
T KOG1920|consen 246 SLSWKPSGS-LIAAIQCKTSDSDIVFFERNGLRHGEFVLPFP-LDEKEVEELAWNSNSDILAVVTSNLENSLVQLWTTG- 322 (1265)
T ss_pred ceeecCCCC-eEeeeeecCCCCcEEEEecCCccccccccCCc-ccccchheeeecCCCCceeeeecccccceEEEEEec-
Confidence 999999998 666543 5668999984332 2222222 23344999999999998887 4444559999543
Q ss_pred CCCCceeEEeccCCCCCCeeEEEec-CCCEEEEEECCCCEEEEEee
Q 003579 300 TDGDPRLLRFRSGHSAPPLCIRFYA-NGRHILSAGQDRAFRLFSVI 344 (809)
Q Consensus 300 ~~~~~~~~~~~~~h~~~v~~i~~~~-~~~~l~s~~~dg~i~~wd~~ 344 (809)
+-.+-+...+.-..... +.|+| ....+..-..+|...+++..
T Consensus 323 -NyhWYLKq~l~~~~~~~--~~W~p~~~~~L~v~~~sG~~~v~~~~ 365 (1265)
T KOG1920|consen 323 -NYHWYLKQELQFSQKAL--LMWDPVTEKTLHVLRESGQRLVRDFA 365 (1265)
T ss_pred -CeEEEEEEEEecccccc--ccccCCCceeEEEEecCCcEEEEEEE
Confidence 33333333332222222 78888 33344444467776666653
No 325
>KOG1897 consensus Damage-specific DNA binding complex, subunit DDB1 [Replication, recombination and repair]
Probab=98.47 E-value=0.0052 Score=68.76 Aligned_cols=560 Identities=13% Similarity=0.105 Sum_probs=278.2
Q ss_pred CCeEEEEEEc---CCeEEEEEcCcc-EEEEec--CCCCCCcEEEE--Ee---CCeEEEEECCeEEEEECCeeEEE--Ecc
Q 003579 25 GTENFVTVSV---GKAFHIYNCAKL-NLVLVG--PQLPKKIRALA--SY---RDYTFAAYGNHIAVVKRAHQVAT--WSR 91 (809)
Q Consensus 25 ~~~~~i~~~~---~~~i~iwd~~~~-~~~~~~--~~~~~~I~~la--~~---~~~~~~a~g~~i~vw~~~~~~~~--~~~ 91 (809)
+...+++++. |+++++..-.=+ .-+... ++ ...+..+. ++ +++.+++.-+.=++...+.++.. ..+
T Consensus 368 ~q~qivtCsGa~kdgSLRiiRngi~I~e~A~i~l~G-ikg~w~lk~~v~~~~d~ylvlsf~~eTrvl~i~~e~ee~~~~g 446 (1096)
T KOG1897|consen 368 GQGQIVTCSGAFKDGSLRIIRNGIGIDELASIDLPG-IKGMWSLKSMVDENYDNYLVLSFISETRVLNISEEVEETEDPG 446 (1096)
T ss_pred CCceEEEEeCCCCCCcEEEEecccccceeeEeecCC-ccceeEeeccccccCCcEEEEEeccceEEEEEccceEEecccc
Confidence 3444555554 788988864432 111111 22 34444444 22 23667776666555555444333 334
Q ss_pred ccccEEEEE---EeCCEEEEEeCCCcEEEEEcCCCccccceeeeEEcCCccccEEEEeCCCCCCEEEEEeCCCeEEEEeC
Q 003579 92 HSAKVNLLL---LFGEHILSIDIDGNMFIWAFKGIEENLAPVGHVKLDDKFTPTCIMHPDTYLNKVIVGSQEGSLQLWNI 168 (809)
Q Consensus 92 h~~~V~~l~---~~g~~l~s~~~dg~i~vWd~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~l~~~~~dg~i~lwd~ 168 (809)
-......+. ..|+.|+=+. ...|++.+-+. . ...+....+.....+. .+. ..+++++.++.+...++
T Consensus 447 f~~~~~Tif~S~i~g~~lvQvT-s~~iRl~ss~~--~----~~~W~~p~~~ti~~~~-~n~--sqVvvA~~~~~l~y~~i 516 (1096)
T KOG1897|consen 447 FSTDEQTIFCSTINGNQLVQVT-SNSIRLVSSAG--L----RSEWRPPGKITIGVVS-ANA--SQVVVAGGGLALFYLEI 516 (1096)
T ss_pred ccccCceEEEEccCCceEEEEe-cccEEEEcchh--h----hhcccCCCceEEEEEe-ecc--eEEEEecCccEEEEEEe
Confidence 333333333 3577776665 55688877551 1 2233333333333332 222 35777777777777777
Q ss_pred CCCceEEEE-cCCCCCEEEEEEcCCC------CEEEEEeCCCeEEEEEee-CCeEEEEEeccCC---CcEEEEEEecCCC
Q 003579 169 STKKKLYEF-KGWGSSISSCVSSPAL------DVVAVGCSDGKIHVHNVR-YDEELVTFTHSMR---GAVTALAFSSDGQ 237 (809)
Q Consensus 169 ~~~~~~~~~-~~~~~~I~~l~~sp~~------~~la~g~~dg~i~iwd~~-~~~~~~~~~~~~~---~~V~~l~fs~dg~ 237 (809)
..+.+.... +.....|.|+.++|-+ +++|+|..+..+.+.-.. ....+........ ..|.-..|-.|..
T Consensus 517 ~~~~l~e~~~~~~e~evaCLDisp~~d~~~~s~~~aVG~Ws~~~~~l~~~pd~~~~~~~~l~~~~iPRSIl~~~~e~d~~ 596 (1096)
T KOG1897|consen 517 EDGGLREVSHKEFEYEVACLDISPLGDAPNKSRLLAVGLWSDISMILTFLPDLILITHEQLSGEIIPRSILLTTFEGDIH 596 (1096)
T ss_pred eccceeeeeeheecceeEEEecccCCCCCCcceEEEEEeecceEEEEEECCCcceeeeeccCCCccchheeeEEeeccce
Confidence 666522221 2336789999999853 389999887766555443 3333333322212 2455555655555
Q ss_pred CEEEEEcCCCcEEEEEC--CCceeeeeee-cccccceEEEEEecCCCEEEEEcCCCcEEEEEeeCCCCCceeEEeccCCC
Q 003579 238 PLLASGASSGVISIWNL--EKRRLQSVIR-EAHDNAIISLHFFANEPVLMSASADNSIKMWIFDTTDGDPRLLRFRSGHS 314 (809)
Q Consensus 238 ~~lasg~~dg~I~iwdl--~~~~~~~~~~-~~h~~~V~~l~~~~~~~~l~s~s~d~~i~vw~~~~~~~~~~~~~~~~~h~ 314 (809)
+|.++..||.+.-+.+ .++.....-+ .--..++.=-.|+..++.-+-+..|.-..+|..+.. +....- .-
T Consensus 597 -yLlvalgdG~l~~fv~d~~tg~lsd~Kk~~lGt~P~~Lr~f~sk~~t~vfa~sdrP~viY~~n~k-----Lv~spl-s~ 669 (1096)
T KOG1897|consen 597 -YLLVALGDGALLYFVLDINTGQLSDRKKVTLGTQPISLRTFSSKSRTAVFALSDRPTVIYSSNGK-----LVYSPL-SL 669 (1096)
T ss_pred -EEEEEcCCceEEEEEEEcccceEccccccccCCCCcEEEEEeeCCceEEEEeCCCCEEEEecCCc-----EEEecc-ch
Confidence 8888899999876654 4443322221 012334544455554443333333454445532211 111110 00
Q ss_pred CCCeeE-EEec--CCCEEEEEECCCCEEEEEeeeccc--ceecchhhHHHHHhhccchhhhhccCc-eeEEeeccccccc
Q 003579 315 APPLCI-RFYA--NGRHILSAGQDRAFRLFSVIQDQQ--SRELSQRHVAKRARKLKMKEEELKLKP-VIAFDCAEIRERD 388 (809)
Q Consensus 315 ~~v~~i-~~~~--~~~~l~s~~~dg~i~~wd~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~-i~~~~~~~~~~~~ 388 (809)
..+..+ .|+. -...++++..+ .+++.-+..-+. .+.++.+...+ .+...+ -..+.....|...
T Consensus 670 kev~~~c~f~s~a~~d~l~~~~~~-~l~i~tid~iqkl~irtvpl~~~pr----------rI~~q~~sl~~~v~s~r~e~ 738 (1096)
T KOG1897|consen 670 KEVNHMCPFNSDAYPDSLASANGG-ALTIGTIDEIQKLHIRTVPLGESPR----------RICYQESSLTFGVLSNRIES 738 (1096)
T ss_pred HHhhhhcccccccCCceEEEecCC-ceEEEEecchhhcceeeecCCCChh----------heEecccceEEEEEeccccc
Confidence 111111 1221 12245555433 455554432211 11122111111 111111 1111122222111
Q ss_pred cceeEEeecCCceEEEEEeeeeeecce-eeecCCCCCCCeEEEEEcCC-CCEEEEEeC----------CCcEEEEECCCC
Q 003579 389 WCNVVTCHMDTAQAYVWRLQNFVLGEH-ILRPCPENPTAVKACTISAC-GNFAVLGTA----------GGWIERFNLQSG 456 (809)
Q Consensus 389 ~~~~~~~~~~~~~~~~w~~~~~~~~~~-~~~~~~~~~~~v~~v~~s~~-g~~l~~g~~----------~g~i~i~~~~~~ 456 (809)
......--..-..++++|-++...-.. .+.. ......+.++.+..| +.++++|+. .|.|.+|....+
T Consensus 739 ~~~~~~ee~~~s~l~vlD~nTf~vl~~hef~~-~E~~~Si~s~~~~~d~~t~~vVGT~~v~Pde~ep~~GRIivfe~~e~ 817 (1096)
T KOG1897|consen 739 SAEYYGEEYEVSFLRVLDQNTFEVLSSHEFER-NETALSIISCKFTDDPNTYYVVGTGLVYPDENEPVNGRIIVFEFEEL 817 (1096)
T ss_pred chhhcCCcceEEEEEEecCCceeEEeeccccc-cceeeeeeeeeecCCCceEEEEEEEeeccCCCCcccceEEEEEEecC
Confidence 111000011123344444444332111 1110 011134555567777 788888864 588888888774
Q ss_pred ceeeeeeCcccccccCccccEEEEEEcCCCCEEEEEeCcCeEEEEECCCCceee-eeecCCCeEEEEEeeCCCEEEEEeC
Q 003579 457 ISRGSYLDMSERSNYAHNGEVVGVACDSTNTLMISAGYHGDIKVWDFKGRDLKS-RWEVGCSLVKIVYHRVNGLLATVAD 535 (809)
Q Consensus 457 ~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~-~~~~~~~i~~~~~s~~~~~la~~~~ 535 (809)
........ ..-.+.+.++..- +|+++| +-...|++|++.+.+.++ .-....++..+...-.+..+++|.-
T Consensus 818 ~~L~~v~e------~~v~Gav~aL~~f-ngkllA--~In~~vrLye~t~~~eLr~e~~~~~~~~aL~l~v~gdeI~VgDl 888 (1096)
T KOG1897|consen 818 NSLELVAE------TVVKGAVYALVEF-NGKLLA--GINQSVRLYEWTTERELRIECNISNPIIALDLQVKGDEIAVGDL 888 (1096)
T ss_pred Cceeeeee------eeeccceeehhhh-CCeEEE--ecCcEEEEEEccccceehhhhcccCCeEEEEEEecCcEEEEeec
Confidence 33333210 1223444444432 466655 445689999999884443 3445588889999999999999987
Q ss_pred CCeEEEEEcC--CCeEEEEEe-cCCCCeeeEEECCCCCEEEEEeCCCeEEEEEcCC-------------------ccEEE
Q 003579 536 DLVIRLFDVV--ALRMVRKFE-GHTDRITDFCFSEDGKWLLSSGMDGSLRIWDVIL-------------------ARQID 593 (809)
Q Consensus 536 d~~I~v~d~~--~~~~~~~~~-~h~~~I~~l~fspdg~~l~s~s~D~~I~vwd~~~-------------------~~~i~ 593 (809)
-+++.+.-.+ .+.....-+ -|...++++.+-.+..++. +..+|.+.+-..++ |+.+.
T Consensus 889 m~Sitll~y~~~eg~f~evArD~~p~Wmtaveil~~d~ylg-ae~~gNlf~v~~d~~~~td~eR~~l~~~~~~hlGelvn 967 (1096)
T KOG1897|consen 889 MRSITLLQYKGDEGNFEEVARDYNPNWMTAVEILDDDTYLG-AENSGNLFTVRKDSDATTDEERQILEEVGKFHLGELVN 967 (1096)
T ss_pred cceEEEEEEeccCCceEEeehhhCccceeeEEEecCceEEe-ecccccEEEEEecCCCCchhhhhcccceeeEEecccee
Confidence 7777665443 333433322 3667788888876655544 55667777665432 33444
Q ss_pred EeeeCcceEE--EEEcCCCCeEEEEEeCCCeEEE
Q 003579 594 AIHVDVSITA--LSLSPNMDVLATAHVDQNGVYL 625 (809)
Q Consensus 594 ~~~~~~~v~~--l~~spdg~~lat~~~d~~~i~l 625 (809)
.|++..-|.. -..+|-+.-+..|..+| +|-+
T Consensus 968 ~f~hg~lv~~~~~s~~~~~~~vlfgTv~G-sIG~ 1000 (1096)
T KOG1897|consen 968 KFRHGSLVMQLGDSMIPLEPKVLFGTVNG-SIGI 1000 (1096)
T ss_pred eeeecceEeeccccccCCCCcEEEEEccc-eEEE
Confidence 4444333444 24455555677777777 3543
No 326
>KOG3617 consensus WD40 and TPR repeat-containing protein [General function prediction only]
Probab=98.46 E-value=7.1e-06 Score=88.39 Aligned_cols=114 Identities=16% Similarity=0.156 Sum_probs=86.0
Q ss_pred cEEEEEEecCCCCEEEEEc----CCCcEEEEECCCceeeeeeecccccceEEEEEecCCCEEEEEcCCCcEEEEEeeCCC
Q 003579 226 AVTALAFSSDGQPLLASGA----SSGVISIWNLEKRRLQSVIREAHDNAIISLHFFANEPVLMSASADNSIKMWIFDTTD 301 (809)
Q Consensus 226 ~V~~l~fs~dg~~~lasg~----~dg~I~iwdl~~~~~~~~~~~~h~~~V~~l~~~~~~~~l~s~s~d~~i~vw~~~~~~ 301 (809)
.-+-.+|+|... ++|+++ ..|.|.||- ++|++..... ..-.+++++|+|..-.|+.|=.-|.+.+|.-...
T Consensus 17 vsti~SWHPseP-lfAVA~fS~er~GSVtIfa-dtGEPqr~Vt--~P~hatSLCWHpe~~vLa~gwe~g~~~v~~~~~~- 91 (1416)
T KOG3617|consen 17 VSTISSWHPSEP-LFAVASFSPERGGSVTIFA-DTGEPQRDVT--YPVHATSLCWHPEEFVLAQGWEMGVSDVQKTNTT- 91 (1416)
T ss_pred cccccccCCCCc-eeEEEEecCCCCceEEEEe-cCCCCCcccc--cceehhhhccChHHHHHhhccccceeEEEecCCc-
Confidence 344567888777 888776 468888885 5565443332 2223567999999989999988999999965543
Q ss_pred CCceeEEeccCCCCCCeeEEEecCCCEEEEEECCCCEEEEEeeecc
Q 003579 302 GDPRLLRFRSGHSAPPLCIRFYANGRHILSAGQDRAFRLFSVIQDQ 347 (809)
Q Consensus 302 ~~~~~~~~~~~h~~~v~~i~~~~~~~~l~s~~~dg~i~~wd~~~~~ 347 (809)
..-.....|..++..+.|+++|..++++..-|.+.+|....-.
T Consensus 92 ---e~htv~~th~a~i~~l~wS~~G~~l~t~d~~g~v~lwr~d~~g 134 (1416)
T KOG3617|consen 92 ---ETHTVVETHPAPIQGLDWSHDGTVLMTLDNPGSVHLWRYDVIG 134 (1416)
T ss_pred ---eeeeeccCCCCCceeEEecCCCCeEEEcCCCceeEEEEeeecc
Confidence 3334456799999999999999999999999999999886443
No 327
>KOG3621 consensus WD40 repeat-containing protein [General function prediction only]
Probab=98.46 E-value=2.2e-05 Score=83.72 Aligned_cols=197 Identities=19% Similarity=0.247 Sum_probs=124.4
Q ss_pred EEEEeCCCCCCEEEEEeCCCeEEEEeCCCCceEE-EEcCCCCCEEEEEEcCCCCEEEEEeCCCeEEEEEeeCCe-----E
Q 003579 142 TCIMHPDTYLNKVIVGSQEGSLQLWNISTKKKLY-EFKGWGSSISSCVSSPALDVVAVGCSDGKIHVHNVRYDE-----E 215 (809)
Q Consensus 142 ~~~~~p~~~~~~l~~~~~dg~i~lwd~~~~~~~~-~~~~~~~~I~~l~~sp~~~~la~g~~dg~i~iwd~~~~~-----~ 215 (809)
-.++.... ++++.|+.-|.+++|+-..++... ...+-.+.+..+..+++..++|.|+..|.|.++-+..+. .
T Consensus 38 lTc~dst~--~~l~~GsS~G~lyl~~R~~~~~~~~~~~~~~~~~~~~~vs~~e~lvAagt~~g~V~v~ql~~~~p~~~~~ 115 (726)
T KOG3621|consen 38 LTCVDATE--EYLAMGSSAGSVYLYNRHTGEMRKLKNEGATGITCVRSVSSVEYLVAAGTASGRVSVFQLNKELPRDLDY 115 (726)
T ss_pred EEEeecCC--ceEEEecccceEEEEecCchhhhcccccCccceEEEEEecchhHhhhhhcCCceEEeehhhccCCCccee
Confidence 33444455 789999999999999966555432 233345667778899999999999999999999887543 2
Q ss_pred EEEEeccCCCcEEEEEEecCCCCEEEEEcCCCcEEEEECCCc----eeeeeeecccccceEEEEEecCCCEEEEEcCCCc
Q 003579 216 LVTFTHSMRGAVTALAFSSDGQPLLASGASSGVISIWNLEKR----RLQSVIREAHDNAIISLHFFANEPVLMSASADNS 291 (809)
Q Consensus 216 ~~~~~~~~~~~V~~l~fs~dg~~~lasg~~dg~I~iwdl~~~----~~~~~~~~~h~~~V~~l~~~~~~~~l~s~s~d~~ 291 (809)
+......|+..|++++|++|+. .+.+|...|.|..-.+... .....+. .-.+.|..+.+.. +.+|++... ..
T Consensus 116 ~t~~d~~~~~rVTal~Ws~~~~-k~ysGD~~Gkv~~~~L~s~~~~~~~~q~il-~~ds~IVQlD~~q-~~LLVStl~-r~ 191 (726)
T KOG3621|consen 116 VTPCDKSHKCRVTALEWSKNGM-KLYSGDSQGKVVLTELDSRQAFLSKSQEIL-SEDSEIVQLDYLQ-SYLLVSTLT-RC 191 (726)
T ss_pred eccccccCCceEEEEEeccccc-EEeecCCCceEEEEEechhhhhccccceee-ccCcceEEeeccc-ceehHhhhh-hh
Confidence 2233334578999999999999 8999999999999988872 1111222 3457788887763 334444332 22
Q ss_pred EEEEEeeCCCCCceeEEeccCCCCCCeeEEEecC----CCEEEEEECCCCEEEEEeeeccc
Q 003579 292 IKMWIFDTTDGDPRLLRFRSGHSAPPLCIRFYAN----GRHILSAGQDRAFRLFSVIQDQQ 348 (809)
Q Consensus 292 i~vw~~~~~~~~~~~~~~~~~h~~~v~~i~~~~~----~~~l~s~~~dg~i~~wd~~~~~~ 348 (809)
.+++.+..+ .+.+-......-.-...+|.|. .+-.+.|+.-| .|+|...-...
T Consensus 192 -~Lc~tE~et--i~QIG~k~R~~~~~~GACF~~g~~~~q~~~IycaRPG-~RlWead~~G~ 248 (726)
T KOG3621|consen 192 -ILCQTEAET--ITQIGKKPRKSLIDFGACFFPGQCKAQKPQIYCARPG-LRLWEADFAGE 248 (726)
T ss_pred -heeecchhH--HHHhcCCCcCCccccceEEeeccccCCCceEEEecCC-CceEEeeccee
Confidence 233333221 1111111111112345566663 45566777776 68888765443
No 328
>PF00400 WD40: WD domain, G-beta repeat; InterPro: IPR019781 WD-40 repeats (also known as WD or beta-transducin repeats) are short ~40 amino acid motifs, often terminating in a Trp-Asp (W-D) dipeptide. WD40 repeats usually assume a 7-8 bladed beta-propeller fold, but proteins have been found with 4 to 16 repeated units, which also form a circularised beta-propeller structure. WD-repeat proteins are a large family found in all eukaryotes and are implicated in a variety of functions ranging from signal transduction and transcription regulation to cell cycle control and apoptosis. Repeated WD40 motifs act as a site for protein-protein interaction, and proteins containing WD40 repeats are known to serve as platforms for the assembly of protein complexes or mediators of transient interplay among other proteins. The specificity of the proteins is determined by the sequences outside the repeats themselves. Examples of such complexes are G proteins (beta subunit is a beta-propeller), TAFII transcription factor, and E3 ubiquitin ligase [, ]. In Arabidopsis spp., several WD40-containing proteins act as key regulators of plant-specific developmental events.; PDB: 2ZKQ_a 3CFV_B 3CFS_B 1PEV_A 1NR0_A 1VYH_T 3RFH_A 3O2Z_T 3FRX_C 3U5G_g ....
Probab=98.45 E-value=6.3e-07 Score=60.17 Aligned_cols=39 Identities=41% Similarity=0.536 Sum_probs=37.2
Q ss_pred CceEEEEcCCCCCEEEEEEcCCCCEEEEEeCCCeEEEEE
Q 003579 171 KKKLYEFKGWGSSISSCVSSPALDVVAVGCSDGKIHVHN 209 (809)
Q Consensus 171 ~~~~~~~~~~~~~I~~l~~sp~~~~la~g~~dg~i~iwd 209 (809)
+++++++.+|.+.|++++|+|++++|++|+.|+.|++||
T Consensus 1 g~~~~~~~~h~~~i~~i~~~~~~~~~~s~~~D~~i~vwd 39 (39)
T PF00400_consen 1 GKCVRTFRGHSSSINSIAWSPDGNFLASGSSDGTIRVWD 39 (39)
T ss_dssp EEEEEEEESSSSSEEEEEEETTSSEEEEEETTSEEEEEE
T ss_pred CeEEEEEcCCCCcEEEEEEecccccceeeCCCCEEEEEC
Confidence 468899999999999999999999999999999999997
No 329
>KOG1832 consensus HIV-1 Vpr-binding protein [Cell cycle control, cell division, chromosome partitioning]
Probab=98.44 E-value=2.5e-07 Score=99.66 Aligned_cols=169 Identities=18% Similarity=0.172 Sum_probs=119.0
Q ss_pred ceEEEEcCCCCCEEEEEEcCCCCEEEEEeCCCeEEEEEeeCCeEEEEEeccCCCcEEEEEEecCCCCEEEEEcCCC-cEE
Q 003579 172 KKLYEFKGWGSSISSCVSSPALDVVAVGCSDGKIHVHNVRYDEELVTFTHSMRGAVTALAFSSDGQPLLASGASSG-VIS 250 (809)
Q Consensus 172 ~~~~~~~~~~~~I~~l~~sp~~~~la~g~~dg~i~iwd~~~~~~~~~~~~~~~~~V~~l~fs~dg~~~lasg~~dg-~I~ 250 (809)
+...+|..|....+|++|+-+.+.|++|+..|.|+++|+.+|........| ...|+-+.=+.||...|.+++... ...
T Consensus 1092 r~w~~frd~~~~fTc~afs~~~~hL~vG~~~Geik~~nv~sG~~e~s~ncH-~SavT~vePs~dgs~~Ltsss~S~Plsa 1170 (1516)
T KOG1832|consen 1092 RSWRSFRDETALFTCIAFSGGTNHLAVGSHAGEIKIFNVSSGSMEESVNCH-QSAVTLVEPSVDGSTQLTSSSSSSPLSA 1170 (1516)
T ss_pred ccchhhhccccceeeEEeecCCceEEeeeccceEEEEEccCcccccccccc-ccccccccccCCcceeeeeccccCchHH
Confidence 455667888999999999999999999999999999999999999888887 889999999999984444444333 678
Q ss_pred EEECCC-ceeeeeeecccccceEEEEEecCCCEEEEEcCCCcEEEEEeeCCCCCceeEEeccCCCCCCeeEEEecCCCEE
Q 003579 251 IWNLEK-RRLQSVIREAHDNAIISLHFFANEPVLMSASADNSIKMWIFDTTDGDPRLLRFRSGHSAPPLCIRFYANGRHI 329 (809)
Q Consensus 251 iwdl~~-~~~~~~~~~~h~~~V~~l~~~~~~~~l~s~s~d~~i~vw~~~~~~~~~~~~~~~~~h~~~v~~i~~~~~~~~l 329 (809)
+|++.+ +...+.+. .-.++.|+.....-+.|..-....+||+.+.......+.-..+.+..-++..|+|+...+
T Consensus 1171 LW~~~s~~~~~Hsf~-----ed~~vkFsn~~q~r~~gt~~d~a~~YDvqT~~~l~tylt~~~~~~y~~n~a~FsP~D~LI 1245 (1516)
T KOG1832|consen 1171 LWDASSTGGPRHSFD-----EDKAVKFSNSLQFRALGTEADDALLYDVQTCSPLQTYLTDTVTSSYSNNLAHFSPCDTLI 1245 (1516)
T ss_pred HhccccccCcccccc-----ccceeehhhhHHHHHhcccccceEEEecccCcHHHHhcCcchhhhhhccccccCCCcceE
Confidence 999865 23333333 456778877544334444445678998887653322222222333334788899988777
Q ss_pred EEEECCCCEEEEEeeeccccee
Q 003579 330 LSAGQDRAFRLFSVIQDQQSRE 351 (809)
Q Consensus 330 ~s~~~dg~i~~wd~~~~~~~~~ 351 (809)
+ .|| .+||++..+.+..
T Consensus 1246 l---ndG--vLWDvR~~~aIh~ 1262 (1516)
T KOG1832|consen 1246 L---NDG--VLWDVRIPEAIHR 1262 (1516)
T ss_pred e---eCc--eeeeeccHHHHhh
Confidence 6 355 4799876644433
No 330
>KOG2114 consensus Vacuolar assembly/sorting protein PEP5/VPS11 [Intracellular trafficking, secretion, and vesicular transport]
Probab=98.43 E-value=7.2e-05 Score=81.57 Aligned_cols=197 Identities=13% Similarity=0.225 Sum_probs=135.3
Q ss_pred cEEEEeCCCCCCEEEEEeCCCeEEEEeCCCCceEEEEcCCCCC-EEEEEEcCCCCEEEEEeCCC-----eEEEEEeeCC-
Q 003579 141 PTCIMHPDTYLNKVIVGSQEGSLQLWNISTKKKLYEFKGWGSS-ISSCVSSPALDVVAVGCSDG-----KIHVHNVRYD- 213 (809)
Q Consensus 141 ~~~~~~p~~~~~~l~~~~~dg~i~lwd~~~~~~~~~~~~~~~~-I~~l~~sp~~~~la~g~~dg-----~i~iwd~~~~- 213 (809)
...++++.+ ..++.|+.+|.|.+.| +..+.++.|+.+... |..+-...+..+|++.+.|+ .++||+++.-
T Consensus 27 ~isc~~s~~--~~vvigt~~G~V~~Ln-~s~~~~~~fqa~~~siv~~L~~~~~~~~L~sv~Ed~~~np~llkiw~lek~~ 103 (933)
T KOG2114|consen 27 AISCCSSST--GSVVIGTADGRVVILN-SSFQLIRGFQAYEQSIVQFLYILNKQNFLFSVGEDEQGNPVLLKIWDLEKVD 103 (933)
T ss_pred ceeEEcCCC--ceEEEeeccccEEEec-ccceeeehheecchhhhhHhhcccCceEEEEEeecCCCCceEEEEecccccC
Confidence 455677787 7899999999999998 466677888888777 55554444446777766653 5999999733
Q ss_pred -----eEE---EEEe--cc-CCCcEEEEEEecCCCCEEEEEcCCCcEEEEECC--Ccee-eeeeecccccceEEEEEecC
Q 003579 214 -----EEL---VTFT--HS-MRGAVTALAFSSDGQPLLASGASSGVISIWNLE--KRRL-QSVIREAHDNAIISLHFFAN 279 (809)
Q Consensus 214 -----~~~---~~~~--~~-~~~~V~~l~fs~dg~~~lasg~~dg~I~iwdl~--~~~~-~~~~~~~h~~~V~~l~~~~~ 279 (809)
.++ +.+. .+ ...++.+++.+.+-+ .+|+|-.+|.|..+.-+ ..+- ...+.....++|+++.+..+
T Consensus 104 ~n~sP~c~~~~ri~~~~np~~~~p~s~l~Vs~~l~-~Iv~Gf~nG~V~~~~GDi~RDrgsr~~~~~~~~~pITgL~~~~d 182 (933)
T KOG2114|consen 104 KNNSPQCLYEHRIFTIKNPTNPSPASSLAVSEDLK-TIVCGFTNGLVICYKGDILRDRGSRQDYSHRGKEPITGLALRSD 182 (933)
T ss_pred CCCCcceeeeeeeeccCCCCCCCcceEEEEEcccc-EEEEEecCcEEEEEcCcchhccccceeeeccCCCCceeeEEecC
Confidence 233 1122 11 246899999999877 89999999999988422 1111 12222234579999999999
Q ss_pred CCEEEEEcCCCcEEEEEeeCCCCCceeEEeccCCCCCCeeEEEecCCCEEEEEECCCCEEEEEeee
Q 003579 280 EPVLMSASADNSIKMWIFDTTDGDPRLLRFRSGHSAPPLCIRFYANGRHILSAGQDRAFRLFSVIQ 345 (809)
Q Consensus 280 ~~~l~s~s~d~~i~vw~~~~~~~~~~~~~~~~~h~~~v~~i~~~~~~~~l~s~~~dg~i~~wd~~~ 345 (809)
+..++-+..-..|.+|.+...+ ..+.....|..++.|..+++....++.++.. .+.+|+...
T Consensus 183 ~~s~lFv~Tt~~V~~y~l~gr~---p~~~~ld~~G~~lnCss~~~~t~qfIca~~e-~l~fY~sd~ 244 (933)
T KOG2114|consen 183 GKSVLFVATTEQVMLYSLSGRT---PSLKVLDNNGISLNCSSFSDGTYQFICAGSE-FLYFYDSDG 244 (933)
T ss_pred CceeEEEEecceeEEEEecCCC---cceeeeccCCccceeeecCCCCccEEEecCc-eEEEEcCCC
Confidence 8863333344679999887433 2345567888899999999866556666544 488888643
No 331
>PF00930 DPPIV_N: Dipeptidyl peptidase IV (DPP IV) N-terminal region; InterPro: IPR002469 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Proteolytic enzymes that exploit serine in their catalytic activity are ubiquitous, being found in viruses, bacteria and eukaryotes []. They include a wide range of peptidase activity, including exopeptidase, endopeptidase, oligopeptidase and omega-peptidase activity. Over 20 families (denoted S1 - S66) of serine protease have been identified, these being grouped into clans on the basis of structural similarity and other functional evidence []. Structures are known for members of the clans and the structures indicate that some appear to be totally unrelated, suggesting different evolutionary origins for the serine peptidases []. Not withstanding their different evolutionary origins, there are similarities in the reaction mechanisms of several peptidases. Chymotrypsin, subtilisin and carboxypeptidase C have a catalytic triad of serine, aspartate and histidine in common: serine acts as a nucleophile, aspartate as an electrophile, and histidine as a base []. The geometric orientations of the catalytic residues are similar between families, despite different protein folds []. The linear arrangements of the catalytic residues commonly reflect clan relationships. For example the catalytic triad in the chymotrypsin clan (PA) is ordered HDS, but is ordered DHS in the subtilisin clan (SB) and SDH in the carboxypeptidase clan (SC) [, ]. This domain defines serine peptidases belonging to MEROPS peptidase family S9 (clan SC), subfamily S9B (dipeptidyl-peptidase IV). The protein fold of the peptidase domain for members of this family resembles that of serine carboxypeptidase D, the type example of clan SC. This domain is an alignment of the region to the N-terminal side of the active site, which is found in IPR001375 from INTERPRO. CD26 (3.4.14.5 from EC) is also called adenosine deaminase-binding protein (ADA-binding protein) or dipeptidylpeptidase IV (DPP IV ectoenzyme). The exopeptidase cleaves off N-terminal X-Pro or X-Ala dipeptides from polypeptides (dipeptidyl peptidase IV activity). CD26 serves as the costimulatory molecule in T cell activation and is an associated marker of autoimmune diseases, adenosine deaminase-deficiency and HIV pathogenesis. Dipeptidyl peptidase IV (DPP IV) is responsible for the removal of N-terminal dipeptides sequentially from polypeptides having unsubstituted N termini, provided that the penultimate residue is proline. The enzyme catalyses the reaction: Dipeptidyl-Polypeptide + H(2)O = Dipeptide + Polypeptide It is a type II membrane protein that forms a homodimer. CD molecules are leucocyte antigens on cell surfaces. CD antigens nomenclature is updated at Protein Reviews On The Web (http://prow.nci.nih.gov/). ; GO: 0006508 proteolysis, 0016020 membrane; PDB: 2RIP_A 3Q8W_B 2AJL_I 1TKR_B 1TK3_B 3C45_A 2G5P_A 3G0C_D 1R9M_C 1RWQ_A ....
Probab=98.43 E-value=0.00014 Score=77.12 Aligned_cols=304 Identities=10% Similarity=0.050 Sum_probs=154.1
Q ss_pred cCCCCEEEEEe---------CCCeEEEEEeeCCeEEEEEeccCCCcEEEEEEecCCCCEEEEEcCCCcEEEEECCCceee
Q 003579 190 SPALDVVAVGC---------SDGKIHVHNVRYDEELVTFTHSMRGAVTALAFSSDGQPLLASGASSGVISIWNLEKRRLQ 260 (809)
Q Consensus 190 sp~~~~la~g~---------~dg~i~iwd~~~~~~~~~~~~~~~~~V~~l~fs~dg~~~lasg~~dg~I~iwdl~~~~~~ 260 (809)
|||+++++... ..+.+.|+|+.+++....... ...+....|+|+|+ .+|... ++.|.++++.++...
T Consensus 1 S~d~~~~l~~~~~~~~~r~s~~~~y~i~d~~~~~~~~l~~~--~~~~~~~~~sP~g~-~~~~v~-~~nly~~~~~~~~~~ 76 (353)
T PF00930_consen 1 SPDGKFVLFATNYTKQWRHSFKGDYYIYDIETGEITPLTPP--PPKLQDAKWSPDGK-YIAFVR-DNNLYLRDLATGQET 76 (353)
T ss_dssp -TTSSEEEEEEEEEEESSSEEEEEEEEEETTTTEEEESS-E--ETTBSEEEE-SSST-EEEEEE-TTEEEEESSTTSEEE
T ss_pred CCCCCeEEEEECcEEeeeeccceeEEEEecCCCceEECcCC--ccccccceeecCCC-eeEEEe-cCceEEEECCCCCeE
Confidence 68888888742 246789999998765444333 46789999999999 555544 678999998887554
Q ss_pred eeeeccc----------------ccceEEEEEecCCCEEEEEcC-CCcEEEEEeeCCCCCceeEEeccCCCCCCeeEEEe
Q 003579 261 SVIREAH----------------DNAIISLHFFANEPVLMSASA-DNSIKMWIFDTTDGDPRLLRFRSGHSAPPLCIRFY 323 (809)
Q Consensus 261 ~~~~~~h----------------~~~V~~l~~~~~~~~l~s~s~-d~~i~vw~~~~~~~~~~~~~~~~~h~~~v~~i~~~ 323 (809)
+....+- -+.-.++-|+||++.|+.... +..|+.+.+........ -...+..+.+-
T Consensus 77 ~lT~dg~~~i~nG~~dwvyeEEv~~~~~~~~WSpd~~~la~~~~d~~~v~~~~~~~~~~~~~-------~yp~~~~~~YP 149 (353)
T PF00930_consen 77 QLTTDGEPGIYNGVPDWVYEEEVFDRRSAVWWSPDSKYLAFLRFDEREVPEYPLPDYSPPDS-------QYPEVESIRYP 149 (353)
T ss_dssp ESES--TTTEEESB--HHHHHHTSSSSBSEEE-TTSSEEEEEEEE-TTS-EEEEEEESSSTE-------SS-EEEEEE--
T ss_pred EeccccceeEEcCccceeccccccccccceEECCCCCEEEEEEECCcCCceEEeeccCCccc-------cCCcccccccC
Confidence 4333220 012245677787776666543 34444443221111000 00012222321
Q ss_pred cCCCEEEEEECCCCEEEEEeeecccceecchhhHHHHHhhccchhhhhccCceeEEeeccccccccceeEEeecCCceEE
Q 003579 324 ANGRHILSAGQDRAFRLFSVIQDQQSRELSQRHVAKRARKLKMKEEELKLKPVIAFDCAEIRERDWCNVVTCHMDTAQAY 403 (809)
Q Consensus 324 ~~~~~l~s~~~dg~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~ 403 (809)
--|.-.... .+.++++.+++... +....
T Consensus 150 k~G~~np~v----~l~v~~~~~~~~~~-~~~~~----------------------------------------------- 177 (353)
T PF00930_consen 150 KAGDPNPRV----SLFVVDLASGKTTE-LDPPN----------------------------------------------- 177 (353)
T ss_dssp BTTS---EE----EEEEEESSSTCCCE-E---H-----------------------------------------------
T ss_pred CCCCcCCce----EEEEEECCCCcEEE-eeecc-----------------------------------------------
Confidence 122111111 24455554333211 00000
Q ss_pred EEEeeeeeecceeeecCCCCCCCeEEEEEcCCCCEEEEEeCC-----CcEEEEECCCCceeeeeeCcccccccCccccEE
Q 003579 404 VWRLQNFVLGEHILRPCPENPTAVKACTISACGNFAVLGTAG-----GWIERFNLQSGISRGSYLDMSERSNYAHNGEVV 478 (809)
Q Consensus 404 ~w~~~~~~~~~~~~~~~~~~~~~v~~v~~s~~g~~l~~g~~~-----g~i~i~~~~~~~~~~~~~~~~~~~~~~h~~~v~ 478 (809)
........+..+.|+++++.+++...+ -.+.++|..++.......... .+.-..-.
T Consensus 178 ---------------~~~~~~~yl~~v~W~~d~~~l~~~~~nR~q~~~~l~~~d~~tg~~~~~~~e~~----~~Wv~~~~ 238 (353)
T PF00930_consen 178 ---------------SLNPQDYYLTRVGWSPDGKRLWVQWLNRDQNRLDLVLCDASTGETRVVLEETS----DGWVDVYD 238 (353)
T ss_dssp ---------------HHHTSSEEEEEEEEEETTEEEEEEEEETTSTEEEEEEEEECTTTCEEEEEEES----SSSSSSSS
T ss_pred ---------------ccCCCccCcccceecCCCcEEEEEEcccCCCEEEEEEEECCCCceeEEEEecC----Ccceeeec
Confidence 000112567788888888844443322 256677877776655443111 11111222
Q ss_pred EEEEc-CCC-CEEEEEeCcCe--EEEEECCCCceeeeeecCCCeEE-EEEeeCCCEEEEE-eC----CCeEEEEEcCCCe
Q 003579 479 GVACD-STN-TLMISAGYHGD--IKVWDFKGRDLKSRWEVGCSLVK-IVYHRVNGLLATV-AD----DLVIRLFDVVALR 548 (809)
Q Consensus 479 ~l~~~-~~~-~~l~s~~~dg~--i~iwd~~~~~~~~~~~~~~~i~~-~~~s~~~~~la~~-~~----d~~I~v~d~~~~~ 548 (809)
...+. +++ .++.....||. |.+++..++.........-.|.. +.+.++++.|... .. ...++..++..+.
T Consensus 239 ~~~~~~~~~~~~l~~s~~~G~~hly~~~~~~~~~~~lT~G~~~V~~i~~~d~~~~~iyf~a~~~~p~~r~lY~v~~~~~~ 318 (353)
T PF00930_consen 239 PPHFLGPDGNEFLWISERDGYRHLYLYDLDGGKPRQLTSGDWEVTSILGWDEDNNRIYFTANGDNPGERHLYRVSLDSGG 318 (353)
T ss_dssp EEEE-TTTSSEEEEEEETTSSEEEEEEETTSSEEEESS-SSS-EEEEEEEECTSSEEEEEESSGGTTSBEEEEEETTETT
T ss_pred ccccccCCCCEEEEEEEcCCCcEEEEEcccccceeccccCceeecccceEcCCCCEEEEEecCCCCCceEEEEEEeCCCC
Confidence 44443 555 44445556665 55556666665443344455644 6778887766544 33 2367777777334
Q ss_pred EEEEEecCCCCeeeEEECCCCCEEEEE
Q 003579 549 MVRKFEGHTDRITDFCFSEDGKWLLSS 575 (809)
Q Consensus 549 ~~~~~~~h~~~I~~l~fspdg~~l~s~ 575 (809)
.+..+....+.-..+.|||+|++++-.
T Consensus 319 ~~~~LT~~~~~~~~~~~Spdg~y~v~~ 345 (353)
T PF00930_consen 319 EPKCLTCEDGDHYSASFSPDGKYYVDT 345 (353)
T ss_dssp EEEESSTTSSTTEEEEE-TTSSEEEEE
T ss_pred CeEeccCCCCCceEEEECCCCCEEEEE
Confidence 455555443333689999999988743
No 332
>KOG1645 consensus RING-finger-containing E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=98.43 E-value=1.6e-05 Score=78.96 Aligned_cols=93 Identities=14% Similarity=0.103 Sum_probs=71.6
Q ss_pred EEEEECCCceeeeeeecccccceEEEEEecCCC-EEEEEcCCCcEEEEEeeCCCCCceeEEeccCCCCCCeeEEEecCC-
Q 003579 249 ISIWNLEKRRLQSVIREAHDNAIISLHFFANEP-VLMSASADNSIKMWIFDTTDGDPRLLRFRSGHSAPPLCIRFYANG- 326 (809)
Q Consensus 249 I~iwdl~~~~~~~~~~~~h~~~V~~l~~~~~~~-~l~s~s~d~~i~vw~~~~~~~~~~~~~~~~~h~~~v~~i~~~~~~- 326 (809)
+++.+..+-+....+. .|...|..++|+|..+ ++..++.++.|++.|+.+.. .......| .++.+++|.-|.
T Consensus 175 v~~l~~~~fkssq~lp-~~g~~IrdlafSp~~~GLl~~asl~nkiki~dlet~~----~vssy~a~-~~~wSC~wDlde~ 248 (463)
T KOG1645|consen 175 VQKLESHDFKSSQILP-GEGSFIRDLAFSPFNEGLLGLASLGNKIKIMDLETSC----VVSSYIAY-NQIWSCCWDLDER 248 (463)
T ss_pred eEEeccCCcchhhccc-ccchhhhhhccCccccceeeeeccCceEEEEecccce----eeeheecc-CCceeeeeccCCc
Confidence 5666655555555444 7888999999999877 78889999999999998763 44444455 789999998854
Q ss_pred CEEEEEECCCCEEEEEeeecc
Q 003579 327 RHILSAGQDRAFRLFSVIQDQ 347 (809)
Q Consensus 327 ~~l~s~~~dg~i~~wd~~~~~ 347 (809)
++|..|-..|.|.+||++..+
T Consensus 249 h~IYaGl~nG~VlvyD~R~~~ 269 (463)
T KOG1645|consen 249 HVIYAGLQNGMVLVYDMRQPE 269 (463)
T ss_pred ceeEEeccCceEEEEEccCCC
Confidence 566677788999999987654
No 333
>PF08596 Lgl_C: Lethal giant larvae(Lgl) like, C-terminal; InterPro: IPR013905 The Lethal giant larvae (Lgl) tumour suppressor protein is conserved from yeast to mammals. The Lgl protein functions in cell polarity, at least in part, by regulating SNARE-mediated membrane delivery events at the cell surface []. The N-terminal half of Lgl members contains WD40 repeats (see IPR001680 from INTERPRO), while the C-terminal half appears specific to the protein []. ; PDB: 2OAJ_A.
Probab=98.43 E-value=8.8e-05 Score=78.29 Aligned_cols=202 Identities=13% Similarity=0.117 Sum_probs=116.4
Q ss_pred CCCeEEEEEcCCCCEEEEEeCCCcEEEEECCCCceeeeeeCcccccccCccccEEEEEEcC-----CC---CEEEEEeCc
Q 003579 424 PTAVKACTISACGNFAVLGTAGGWIERFNLQSGISRGSYLDMSERSNYAHNGEVVGVACDS-----TN---TLMISAGYH 495 (809)
Q Consensus 424 ~~~v~~v~~s~~g~~l~~g~~~g~i~i~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~-----~~---~~l~s~~~d 495 (809)
.++|++++.| +=-|+++|+.+|.+.+.|++....+..-..............++++.|.- |+ -.+++|...
T Consensus 86 ~g~vtal~~S-~iGFvaigy~~G~l~viD~RGPavI~~~~i~~~~~~~~~~~~vt~ieF~vm~~~~D~ySSi~L~vGTn~ 164 (395)
T PF08596_consen 86 QGPVTALKNS-DIGFVAIGYESGSLVVIDLRGPAVIYNENIRESFLSKSSSSYVTSIEFSVMTLGGDGYSSICLLVGTNS 164 (395)
T ss_dssp S-SEEEEEE--BTSEEEEEETTSEEEEEETTTTEEEEEEEGGG--T-SS----EEEEEEEEEE-TTSSSEEEEEEEEETT
T ss_pred CCcEeEEecC-CCcEEEEEecCCcEEEEECCCCeEEeeccccccccccccccCeeEEEEEEEecCCCcccceEEEEEeCC
Confidence 4899999997 56799999999999999998777665532111111123345677887752 33 478888899
Q ss_pred CeEEEEECCC---Cce----eeee-ecCCCeEEEE-EeeCC--------------------CEEEEEeCCCeEEEEEcCC
Q 003579 496 GDIKVWDFKG---RDL----KSRW-EVGCSLVKIV-YHRVN--------------------GLLATVADDLVIRLFDVVA 546 (809)
Q Consensus 496 g~i~iwd~~~---~~~----~~~~-~~~~~i~~~~-~s~~~--------------------~~la~~~~d~~I~v~d~~~ 546 (809)
|.+.+|.+.- +.. .... ...+++..+. ++.+. .-+++.+.+..+|++...+
T Consensus 165 G~v~~fkIlp~~~g~f~v~~~~~~~~~~~~i~~I~~i~~~~G~~a~At~~~~~~l~~g~~i~g~vVvvSe~~irv~~~~~ 244 (395)
T PF08596_consen 165 GNVLTFKILPSSNGRFSVQFAGATTNHDSPILSIIPINADTGESALATISAMQGLSKGISIPGYVVVVSESDIRVFKPPK 244 (395)
T ss_dssp SEEEEEEEEE-GGG-EEEEEEEEE--SS----EEEEEETTT--B-B-BHHHHHGGGGT----EEEEEE-SSEEEEE-TT-
T ss_pred CCEEEEEEecCCCCceEEEEeeccccCCCceEEEEEEECCCCCcccCchhHhhccccCCCcCcEEEEEcccceEEEeCCC
Confidence 9999998751 211 1111 2335555544 32221 1244555678899999988
Q ss_pred CeEEEEEecCCCCeeeEEEC-----CCCCEEEEEeCCCeEEEEEcCCccEEEEeeeCcc-----eEEEEEcCCCCeEEEE
Q 003579 547 LRMVRKFEGHTDRITDFCFS-----EDGKWLLSSGMDGSLRIWDVILARQIDAIHVDVS-----ITALSLSPNMDVLATA 616 (809)
Q Consensus 547 ~~~~~~~~~h~~~I~~l~fs-----pdg~~l~s~s~D~~I~vwd~~~~~~i~~~~~~~~-----v~~l~~spdg~~lat~ 616 (809)
.+...+.....-....+.+- ..+..|++-..+|.|+++.++.-+.+..+..+.. +....++++|+.++-.
T Consensus 245 ~k~~~K~~~~~~~~~~~~vv~~~~~~~~~~Lv~l~~~G~i~i~SLP~Lkei~~~~l~~~~d~~~~~~ssis~~Gdi~~~~ 324 (395)
T PF08596_consen 245 SKGAHKSFDDPFLCSSASVVPTISRNGGYCLVCLFNNGSIRIYSLPSLKEIKSVSLPPPLDSRRLSSSSISRNGDIFYWT 324 (395)
T ss_dssp --EEEEE-SS-EEEEEEEEEEEE-EEEEEEEEEEETTSEEEEEETTT--EEEEEE-SS---HHHHTT-EE-TTS-EEEE-
T ss_pred CcccceeeccccccceEEEEeecccCCceEEEEEECCCcEEEEECCCchHhhcccCCCccccccccccEECCCCCEEEEe
Confidence 87766555332233344552 3566788888999999999999999988876432 6677889999988887
Q ss_pred EeCCCeEEEeec
Q 003579 617 HVDQNGVYLWVN 628 (809)
Q Consensus 617 ~~d~~~i~lW~~ 628 (809)
+... +.++.+
T Consensus 325 gpsE--~~l~sv 334 (395)
T PF08596_consen 325 GPSE--IQLFSV 334 (395)
T ss_dssp SSSE--EEEEEE
T ss_pred Cccc--EEEEEE
Confidence 6653 555543
No 334
>KOG1275 consensus PAB-dependent poly(A) ribonuclease, subunit PAN2 [Replication, recombination and repair]
Probab=98.40 E-value=5.3e-06 Score=90.41 Aligned_cols=183 Identities=14% Similarity=0.187 Sum_probs=137.6
Q ss_pred eCCEEEEEeCCCcEEEEEcCCCccccceeeeEEcCCccccEEEEeCCCCCCEEEEEeCCCeEEEEeCCCCceEEEEcCCC
Q 003579 102 FGEHILSIDIDGNMFIWAFKGIEENLAPVGHVKLDDKFTPTCIMHPDTYLNKVIVGSQEGSLQLWNISTKKKLYEFKGWG 181 (809)
Q Consensus 102 ~g~~l~s~~~dg~i~vWd~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~l~~~~~dg~i~lwd~~~~~~~~~~~~~~ 181 (809)
.+..++.|+-...+...|+.+.+. .+........ ..++--++ +.+.+|...|+|.+-|.++.+.++++..|.
T Consensus 146 ~~~~~i~Gg~Q~~li~~Dl~~~~e----~r~~~v~a~~--v~imR~Nn--r~lf~G~t~G~V~LrD~~s~~~iht~~aHs 217 (1118)
T KOG1275|consen 146 GPSTLIMGGLQEKLIHIDLNTEKE----TRTTNVSASG--VTIMRYNN--RNLFCGDTRGTVFLRDPNSFETIHTFDAHS 217 (1118)
T ss_pred CCcceeecchhhheeeeeccccee----eeeeeccCCc--eEEEEecC--cEEEeecccceEEeecCCcCceeeeeeccc
Confidence 467788888888899999988776 4444433322 22233344 578899999999999999999999999999
Q ss_pred CCEEEEEEcCCCCEEEEEeC---------CCeEEEEEeeCCeEEEEEeccCCCcEEEEEEecCCCCEEEEEcCCCcEEEE
Q 003579 182 SSISSCVSSPALDVVAVGCS---------DGKIHVHNVRYDEELVTFTHSMRGAVTALAFSSDGQPLLASGASSGVISIW 252 (809)
Q Consensus 182 ~~I~~l~~sp~~~~la~g~~---------dg~i~iwd~~~~~~~~~~~~~~~~~V~~l~fs~dg~~~lasg~~dg~I~iw 252 (809)
+.|..+.. .|+.|++++. |.-|+|||++.-+.+.-+..+ .+ ..-+.|.|.=...+++.+..|...+-
T Consensus 218 ~siSDfDv--~GNlLitCG~S~R~~~l~~D~FvkVYDLRmmral~PI~~~-~~-P~flrf~Psl~t~~~V~S~sGq~q~v 293 (1118)
T KOG1275|consen 218 GSISDFDV--QGNLLITCGYSMRRYNLAMDPFVKVYDLRMMRALSPIQFP-YG-PQFLRFHPSLTTRLAVTSQSGQFQFV 293 (1118)
T ss_pred cceeeeec--cCCeEEEeecccccccccccchhhhhhhhhhhccCCcccc-cC-chhhhhcccccceEEEEecccceeec
Confidence 99987655 4778888765 345899999987776666553 23 36678888766678999999999999
Q ss_pred E---CCCceeeeeeecccccceEEEEEecCCCEEEEEcCCCcEEEEE
Q 003579 253 N---LEKRRLQSVIREAHDNAIISLHFFANEPVLMSASADNSIKMWI 296 (809)
Q Consensus 253 d---l~~~~~~~~~~~~h~~~V~~l~~~~~~~~l~s~s~d~~i~vw~ 296 (809)
| +.+...-........+.+.++.+++++..++.+..+|.|.+|.
T Consensus 294 d~~~lsNP~~~~~~v~p~~s~i~~fDiSsn~~alafgd~~g~v~~wa 340 (1118)
T KOG1275|consen 294 DTATLSNPPAGVKMVNPNGSGISAFDISSNGDALAFGDHEGHVNLWA 340 (1118)
T ss_pred cccccCCCccceeEEccCCCcceeEEecCCCceEEEecccCcEeeec
Confidence 9 4443222222224456699999999999999999999999996
No 335
>TIGR03075 PQQ_enz_alc_DH PQQ-dependent dehydrogenase, methanol/ethanol family. This protein family has a phylogenetic distribution very similar to that coenzyme PQQ biosynthesis enzymes, as shown by partial phylogenetic profiling. Genes in this family often are found adjacent to the PQQ biosynthesis genes themselves. An unusual, strained disulfide bond between adjacent Cys residues contributes to PQQ-binding, as does a Trp residue that is part of a PQQ enzyme repeat (see pfam01011). Characterized members include the dehydrogenase subunit of a membrane-anchored, three subunit alcohol (ethanol) dehydrogenase of Gluconobacter suboxydans, a homodimeric ethanol dehydrogenase in Pseudomonas aeruginosa, and the large subunit of an alpha2/beta2 heterotetrameric methanol dehydrogenase in Methylobacterium extorquens.
Probab=98.37 E-value=0.0017 Score=71.99 Aligned_cols=109 Identities=12% Similarity=0.143 Sum_probs=73.5
Q ss_pred CEEEEEeCCCeEEEEeCCCCceEEEEcCCC-CCEE---E-------EEEcCCCCEEEEEeCCCeEEEEEeeCCeEEEEEe
Q 003579 152 NKVIVGSQEGSLQLWNISTKKKLYEFKGWG-SSIS---S-------CVSSPALDVVAVGCSDGKIHVHNVRYDEELVTFT 220 (809)
Q Consensus 152 ~~l~~~~~dg~i~lwd~~~~~~~~~~~~~~-~~I~---~-------l~~sp~~~~la~g~~dg~i~iwd~~~~~~~~~~~ 220 (809)
++|++++.++.|.-.|.++|+.+.++.... ..+. + +++ .+..+++++.|+.+.-.|.++|+.+-...
T Consensus 70 g~vyv~s~~g~v~AlDa~TGk~lW~~~~~~~~~~~~~~~~~~~~rg~av--~~~~v~v~t~dg~l~ALDa~TGk~~W~~~ 147 (527)
T TIGR03075 70 GVMYVTTSYSRVYALDAKTGKELWKYDPKLPDDVIPVMCCDVVNRGVAL--YDGKVFFGTLDARLVALDAKTGKVVWSKK 147 (527)
T ss_pred CEEEEECCCCcEEEEECCCCceeeEecCCCCcccccccccccccccceE--ECCEEEEEcCCCEEEEEECCCCCEEeecc
Confidence 578888889999999999999998876421 1111 1 111 23568888899999999999999987765
Q ss_pred ccCCC---cEEEEEEecCCCCEEEEEc------CCCcEEEEECCCceeeeeee
Q 003579 221 HSMRG---AVTALAFSSDGQPLLASGA------SSGVISIWNLEKRRLQSVIR 264 (809)
Q Consensus 221 ~~~~~---~V~~l~fs~dg~~~lasg~------~dg~I~iwdl~~~~~~~~~~ 264 (809)
..... .+++--..-++. ++++. .+|.|.-+|.++|+.+....
T Consensus 148 ~~~~~~~~~~tssP~v~~g~--Vivg~~~~~~~~~G~v~AlD~~TG~~lW~~~ 198 (527)
T TIGR03075 148 NGDYKAGYTITAAPLVVKGK--VITGISGGEFGVRGYVTAYDAKTGKLVWRRY 198 (527)
T ss_pred cccccccccccCCcEEECCE--EEEeecccccCCCcEEEEEECCCCceeEecc
Confidence 32111 122211112443 44443 26899999999999887765
No 336
>KOG1920 consensus IkappaB kinase complex, IKAP component [Transcription]
Probab=98.33 E-value=0.00052 Score=78.03 Aligned_cols=242 Identities=14% Similarity=0.183 Sum_probs=141.9
Q ss_pred CCcEEEEEEecCCCCEEEEEcCCCcEEEEECCCceeeeeeecccccceEEEEEecCCCEEEEEcCCCcEEEEEeeCCCCC
Q 003579 224 RGAVTALAFSSDGQPLLASGASSGVISIWNLEKRRLQSVIREAHDNAIISLHFFANEPVLMSASADNSIKMWIFDTTDGD 303 (809)
Q Consensus 224 ~~~V~~l~fs~dg~~~lasg~~dg~I~iwdl~~~~~~~~~~~~h~~~V~~l~~~~~~~~l~s~s~d~~i~vw~~~~~~~~ 303 (809)
.+.|.++.|..++. -++.+...|.|.+-|.++......- .-.++|.+++|+||+..++..+.++++.+-..+-.
T Consensus 68 d~~i~s~~fl~d~~-~i~v~~~~G~iilvd~et~~~eivg--~vd~GI~aaswS~Dee~l~liT~~~tll~mT~~f~--- 141 (1265)
T KOG1920|consen 68 DDEIVSVQFLADTN-SICVITALGDIILVDPETLELEIVG--NVDNGISAASWSPDEELLALITGRQTLLFMTKDFE--- 141 (1265)
T ss_pred CcceEEEEEecccc-eEEEEecCCcEEEEcccccceeeee--eccCceEEEeecCCCcEEEEEeCCcEEEEEecccc---
Confidence 35899999999988 6677788999999988877543222 35678999999999999999888887776533211
Q ss_pred ceeEEeccCCCCCCeeEEEecCCCEEEEEECCCCEEEEEeeecccceecchhhHHHHHhhccchhhhhccCceeEEeecc
Q 003579 304 PRLLRFRSGHSAPPLCIRFYANGRHILSAGQDRAFRLFSVIQDQQSRELSQRHVAKRARKLKMKEEELKLKPVIAFDCAE 383 (809)
Q Consensus 304 ~~~~~~~~~h~~~v~~i~~~~~~~~l~s~~~dg~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~ 383 (809)
++....-| ..-.+.++ .+..|..+.=.-+.-..+++... . ....
T Consensus 142 --~i~E~~L~------~d~~~~sk-~v~VGwGrkeTqfrgs~gr~~~~-----------~---~~~~------------- 185 (1265)
T KOG1920|consen 142 --PIAEKPLD------ADDERKSK-FVNVGWGRKETQFRGSEGRQAAR-----------Q---KIEK------------- 185 (1265)
T ss_pred --chhccccc------cccccccc-cceecccccceeeecchhhhccc-----------c---cccc-------------
Confidence 11100000 01111222 22222222111111100000000 0 0000
Q ss_pred ccccccceeEEeecCCceEEEEEeeeeeecceeeecCCCCCCCeEEEEEcCCCCEEEEE-----eCCCcEEEEECCCCce
Q 003579 384 IRERDWCNVVTCHMDTAQAYVWRLQNFVLGEHILRPCPENPTAVKACTISACGNFAVLG-----TAGGWIERFNLQSGIS 458 (809)
Q Consensus 384 ~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~v~~v~~s~~g~~l~~g-----~~~g~i~i~~~~~~~~ 458 (809)
...+. .......-++++|--||.++++. .....|++||-. |..
T Consensus 186 ------------------------------ek~~~-~~~~~~~~~~IsWRgDg~~fAVs~~~~~~~~RkirV~drE-g~L 233 (1265)
T KOG1920|consen 186 ------------------------------EKALE-QIEQDDHKTSISWRGDGEYFAVSFVESETGTRKIRVYDRE-GAL 233 (1265)
T ss_pred ------------------------------ccccc-chhhccCCceEEEccCCcEEEEEEEeccCCceeEEEeccc-chh
Confidence 00000 00111445678999999999883 333689999987 433
Q ss_pred eeeeeCcccccccCccccEEEEEEcCCCCEEEEEe---CcCeEEEEECCC---CceeeeeecC-CCeEEEEEeeCCCEEE
Q 003579 459 RGSYLDMSERSNYAHNGEVVGVACDSTNTLMISAG---YHGDIKVWDFKG---RDLKSRWEVG-CSLVKIVYHRVNGLLA 531 (809)
Q Consensus 459 ~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~l~s~~---~dg~i~iwd~~~---~~~~~~~~~~-~~i~~~~~s~~~~~la 531 (809)
...-. ...+.-.+++|-|.|.++++-. .|+.|.++.-+. +...-.+... .++..++|+.++..||
T Consensus 234 ns~se--------~~~~l~~~LsWkPsgs~iA~iq~~~sd~~IvffErNGL~hg~f~l~~p~de~~ve~L~Wns~sdiLA 305 (1265)
T KOG1920|consen 234 NSTSE--------PVEGLQHSLSWKPSGSLIAAIQCKTSDSDIVFFERNGLRHGEFVLPFPLDEKEVEELAWNSNSDILA 305 (1265)
T ss_pred hcccC--------cccccccceeecCCCCeEeeeeecCCCCcEEEEecCCccccccccCCcccccchheeeecCCCCcee
Confidence 22211 2334456899999999888765 566799987442 2222223333 3489999999999999
Q ss_pred E---EeCCCeEEEEEcCCC
Q 003579 532 T---VADDLVIRLFDVVAL 547 (809)
Q Consensus 532 ~---~~~d~~I~v~d~~~~ 547 (809)
+ ......|++|-+.+-
T Consensus 306 v~~~~~e~~~v~lwt~~Ny 324 (1265)
T KOG1920|consen 306 VVTSNLENSLVQLWTTGNY 324 (1265)
T ss_pred eeecccccceEEEEEecCe
Confidence 8 455566999987764
No 337
>PF00930 DPPIV_N: Dipeptidyl peptidase IV (DPP IV) N-terminal region; InterPro: IPR002469 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Proteolytic enzymes that exploit serine in their catalytic activity are ubiquitous, being found in viruses, bacteria and eukaryotes []. They include a wide range of peptidase activity, including exopeptidase, endopeptidase, oligopeptidase and omega-peptidase activity. Over 20 families (denoted S1 - S66) of serine protease have been identified, these being grouped into clans on the basis of structural similarity and other functional evidence []. Structures are known for members of the clans and the structures indicate that some appear to be totally unrelated, suggesting different evolutionary origins for the serine peptidases []. Not withstanding their different evolutionary origins, there are similarities in the reaction mechanisms of several peptidases. Chymotrypsin, subtilisin and carboxypeptidase C have a catalytic triad of serine, aspartate and histidine in common: serine acts as a nucleophile, aspartate as an electrophile, and histidine as a base []. The geometric orientations of the catalytic residues are similar between families, despite different protein folds []. The linear arrangements of the catalytic residues commonly reflect clan relationships. For example the catalytic triad in the chymotrypsin clan (PA) is ordered HDS, but is ordered DHS in the subtilisin clan (SB) and SDH in the carboxypeptidase clan (SC) [, ]. This domain defines serine peptidases belonging to MEROPS peptidase family S9 (clan SC), subfamily S9B (dipeptidyl-peptidase IV). The protein fold of the peptidase domain for members of this family resembles that of serine carboxypeptidase D, the type example of clan SC. This domain is an alignment of the region to the N-terminal side of the active site, which is found in IPR001375 from INTERPRO. CD26 (3.4.14.5 from EC) is also called adenosine deaminase-binding protein (ADA-binding protein) or dipeptidylpeptidase IV (DPP IV ectoenzyme). The exopeptidase cleaves off N-terminal X-Pro or X-Ala dipeptides from polypeptides (dipeptidyl peptidase IV activity). CD26 serves as the costimulatory molecule in T cell activation and is an associated marker of autoimmune diseases, adenosine deaminase-deficiency and HIV pathogenesis. Dipeptidyl peptidase IV (DPP IV) is responsible for the removal of N-terminal dipeptides sequentially from polypeptides having unsubstituted N termini, provided that the penultimate residue is proline. The enzyme catalyses the reaction: Dipeptidyl-Polypeptide + H(2)O = Dipeptide + Polypeptide It is a type II membrane protein that forms a homodimer. CD molecules are leucocyte antigens on cell surfaces. CD antigens nomenclature is updated at Protein Reviews On The Web (http://prow.nci.nih.gov/). ; GO: 0006508 proteolysis, 0016020 membrane; PDB: 2RIP_A 3Q8W_B 2AJL_I 1TKR_B 1TK3_B 3C45_A 2G5P_A 3G0C_D 1R9M_C 1RWQ_A ....
Probab=98.33 E-value=0.00041 Score=73.46 Aligned_cols=287 Identities=11% Similarity=0.079 Sum_probs=157.0
Q ss_pred CCcEEEEECCCceeeeeeecccccceEEEEEecCCCEEEEEcCCCcEEEEEeeCCCCCceeEEeccC-------C-----
Q 003579 246 SGVISIWNLEKRRLQSVIREAHDNAIISLHFFANEPVLMSASADNSIKMWIFDTTDGDPRLLRFRSG-------H----- 313 (809)
Q Consensus 246 dg~I~iwdl~~~~~~~~~~~~h~~~V~~l~~~~~~~~l~s~s~d~~i~vw~~~~~~~~~~~~~~~~~-------h----- 313 (809)
.+.+.++|+++++...... . ...+....|+|+|+.++... ++.|.+++.... ....+.. .| -
T Consensus 22 ~~~y~i~d~~~~~~~~l~~-~-~~~~~~~~~sP~g~~~~~v~-~~nly~~~~~~~--~~~~lT~-dg~~~i~nG~~dwvy 95 (353)
T PF00930_consen 22 KGDYYIYDIETGEITPLTP-P-PPKLQDAKWSPDGKYIAFVR-DNNLYLRDLATG--QETQLTT-DGEPGIYNGVPDWVY 95 (353)
T ss_dssp EEEEEEEETTTTEEEESS--E-ETTBSEEEE-SSSTEEEEEE-TTEEEEESSTTS--EEEESES---TTTEEESB--HHH
T ss_pred ceeEEEEecCCCceEECcC-C-ccccccceeecCCCeeEEEe-cCceEEEECCCC--CeEEecc-ccceeEEcCccceec
Confidence 4679999999987766554 2 67889999999999988886 566777744332 1111111 11 0
Q ss_pred ----CCCCeeEEEecCCCEEEEEEC-CCCEEEEEeeecccceecchhhHHHHHhhccchhhhhccCceeEEeeccccccc
Q 003579 314 ----SAPPLCIRFYANGRHILSAGQ-DRAFRLFSVIQDQQSRELSQRHVAKRARKLKMKEEELKLKPVIAFDCAEIRERD 388 (809)
Q Consensus 314 ----~~~v~~i~~~~~~~~l~s~~~-dg~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~ 388 (809)
-+.-..+.|+|||++|+.... +..+..+.+........ ..
T Consensus 96 eEEv~~~~~~~~WSpd~~~la~~~~d~~~v~~~~~~~~~~~~~--------------------~y--------------- 140 (353)
T PF00930_consen 96 EEEVFDRRSAVWWSPDSKYLAFLRFDEREVPEYPLPDYSPPDS--------------------QY--------------- 140 (353)
T ss_dssp HHHTSSSSBSEEE-TTSSEEEEEEEE-TTS-EEEEEEESSSTE--------------------SS---------------
T ss_pred cccccccccceEECCCCCEEEEEEECCcCCceEEeeccCCccc--------------------cC---------------
Confidence 123467889999999987654 45566555433211100 00
Q ss_pred cceeEEeecCCceEEEEEeeeeeecceeeecCCCCCCCeEEEEEcCCCCEEEEEeCCC--cEEEEECCCCceeeeeeCcc
Q 003579 389 WCNVVTCHMDTAQAYVWRLQNFVLGEHILRPCPENPTAVKACTISACGNFAVLGTAGG--WIERFNLQSGISRGSYLDMS 466 (809)
Q Consensus 389 ~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~v~~v~~s~~g~~l~~g~~~g--~i~i~~~~~~~~~~~~~~~~ 466 (809)
..+..+.+-. .|..+- .+.++++.+++....-..
T Consensus 141 ------------------------------------p~~~~~~YPk------~G~~np~v~l~v~~~~~~~~~~~~~~-- 176 (353)
T PF00930_consen 141 ------------------------------------PEVESIRYPK------AGDPNPRVSLFVVDLASGKTTELDPP-- 176 (353)
T ss_dssp -------------------------------------EEEEEE--B------TTS---EEEEEEEESSSTCCCEE-----
T ss_pred ------------------------------------CcccccccCC------CCCcCCceEEEEEECCCCcEEEeeec--
Confidence 0000111000 001111 356677777765421110
Q ss_pred cccccCccccEEEEEEcCCCCEEEEEe--Cc---CeEEEEECCCCceeeeeec--C---CCeEEEEEe-eCCC-EEEEEe
Q 003579 467 ERSNYAHNGEVVGVACDSTNTLMISAG--YH---GDIKVWDFKGRDLKSRWEV--G---CSLVKIVYH-RVNG-LLATVA 534 (809)
Q Consensus 467 ~~~~~~h~~~v~~l~~~~~~~~l~s~~--~d---g~i~iwd~~~~~~~~~~~~--~---~~i~~~~~s-~~~~-~la~~~ 534 (809)
.....-...+..+.|.++++.++..- .+ ..+.+.|..+++....... . .......+. +++. ++....
T Consensus 177 -~~~~~~~~yl~~v~W~~d~~~l~~~~~nR~q~~~~l~~~d~~tg~~~~~~~e~~~~Wv~~~~~~~~~~~~~~~~l~~s~ 255 (353)
T PF00930_consen 177 -NSLNPQDYYLTRVGWSPDGKRLWVQWLNRDQNRLDLVLCDASTGETRVVLEETSDGWVDVYDPPHFLGPDGNEFLWISE 255 (353)
T ss_dssp -HHHHTSSEEEEEEEEEETTEEEEEEEEETTSTEEEEEEEEECTTTCEEEEEEESSSSSSSSSEEEE-TTTSSEEEEEEE
T ss_pred -cccCCCccCcccceecCCCcEEEEEEcccCCCEEEEEEEECCCCceeEEEEecCCcceeeecccccccCCCCEEEEEEE
Confidence 00013356788999999998444433 22 2466778877655433322 2 223355554 5554 555555
Q ss_pred CCC--eEEEEEcCCCeEEEEEecCCCCeee-EEECCCCCEEE-EEeCC----CeEEEEEcCCccEEEEeeeCcce-EEEE
Q 003579 535 DDL--VIRLFDVVALRMVRKFEGHTDRITD-FCFSEDGKWLL-SSGMD----GSLRIWDVILARQIDAIHVDVSI-TALS 605 (809)
Q Consensus 535 ~d~--~I~v~d~~~~~~~~~~~~h~~~I~~-l~fspdg~~l~-s~s~D----~~I~vwd~~~~~~i~~~~~~~~v-~~l~ 605 (809)
.+| .|++++..++. .+.+....-.|+. +.++++++.|. +|..+ ..|..-++..+..+..+...... ..+.
T Consensus 256 ~~G~~hly~~~~~~~~-~~~lT~G~~~V~~i~~~d~~~~~iyf~a~~~~p~~r~lY~v~~~~~~~~~~LT~~~~~~~~~~ 334 (353)
T PF00930_consen 256 RDGYRHLYLYDLDGGK-PRQLTSGDWEVTSILGWDEDNNRIYFTANGDNPGERHLYRVSLDSGGEPKCLTCEDGDHYSAS 334 (353)
T ss_dssp TTSSEEEEEEETTSSE-EEESS-SSS-EEEEEEEECTSSEEEEEESSGGTTSBEEEEEETTETTEEEESSTTSSTTEEEE
T ss_pred cCCCcEEEEEcccccc-eeccccCceeecccceEcCCCCEEEEEecCCCCCceEEEEEEeCCCCCeEeccCCCCCceEEE
Confidence 666 45566666665 4455555566755 67888877665 55542 35666677734555666555544 4999
Q ss_pred EcCCCCeEEEEEeC
Q 003579 606 LSPNMDVLATAHVD 619 (809)
Q Consensus 606 ~spdg~~lat~~~d 619 (809)
|||+|++++-.+..
T Consensus 335 ~Spdg~y~v~~~s~ 348 (353)
T PF00930_consen 335 FSPDGKYYVDTYSG 348 (353)
T ss_dssp E-TTSSEEEEEEES
T ss_pred ECCCCCEEEEEEcC
Confidence 99999999877654
No 338
>KOG2114 consensus Vacuolar assembly/sorting protein PEP5/VPS11 [Intracellular trafficking, secretion, and vesicular transport]
Probab=98.31 E-value=0.00018 Score=78.66 Aligned_cols=207 Identities=14% Similarity=0.161 Sum_probs=137.2
Q ss_pred EecCCCCEEEEEcCCCcEEEEECCCceeeeeeecccccc-eEEEEEecCCCEEEEEcCCCc-----EEEEEeeCCCC-C-
Q 003579 232 FSSDGQPLLASGASSGVISIWNLEKRRLQSVIREAHDNA-IISLHFFANEPVLMSASADNS-----IKMWIFDTTDG-D- 303 (809)
Q Consensus 232 fs~dg~~~lasg~~dg~I~iwdl~~~~~~~~~~~~h~~~-V~~l~~~~~~~~l~s~s~d~~-----i~vw~~~~~~~-~- 303 (809)
|++.+. .++.|+.+|.|.+.+- .-+.+..++ ++... |..+....+..+|++.+.|+. +++|+++..++ .
T Consensus 31 ~~s~~~-~vvigt~~G~V~~Ln~-s~~~~~~fq-a~~~siv~~L~~~~~~~~L~sv~Ed~~~np~llkiw~lek~~~n~s 107 (933)
T KOG2114|consen 31 CSSSTG-SVVIGTADGRVVILNS-SFQLIRGFQ-AYEQSIVQFLYILNKQNFLFSVGEDEQGNPVLLKIWDLEKVDKNNS 107 (933)
T ss_pred EcCCCc-eEEEeeccccEEEecc-cceeeehhe-ecchhhhhHhhcccCceEEEEEeecCCCCceEEEEecccccCCCCC
Confidence 455565 8999999999988873 345556666 67666 566655556678999887754 89999987632 2
Q ss_pred ceeE--EeccC-----CCCCCeeEEEecCCCEEEEEECCCCEEEEEeeecccceecchhhHHHHHhhccchhhhhccCce
Q 003579 304 PRLL--RFRSG-----HSAPPLCIRFYANGRHILSAGQDRAFRLFSVIQDQQSRELSQRHVAKRARKLKMKEEELKLKPV 376 (809)
Q Consensus 304 ~~~~--~~~~~-----h~~~v~~i~~~~~~~~l~s~~~dg~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i 376 (809)
|.++ ..... ...|+.+++.+.+-+.++.|-.+|.|..+.-. ..+....
T Consensus 108 P~c~~~~ri~~~~np~~~~p~s~l~Vs~~l~~Iv~Gf~nG~V~~~~GD---i~RDrgs---------------------- 162 (933)
T KOG2114|consen 108 PQCLYEHRIFTIKNPTNPSPASSLAVSEDLKTIVCGFTNGLVICYKGD---ILRDRGS---------------------- 162 (933)
T ss_pred cceeeeeeeeccCCCCCCCcceEEEEEccccEEEEEecCcEEEEEcCc---chhcccc----------------------
Confidence 4444 11112 35578899999998899999999988876421 1110000
Q ss_pred eEEeeccccccccceeEEeecCCceEEEEEeeeeeecceeeecCCCCCCCeEEEEEcCCCCEEEEEeCCCcEEEEECCCC
Q 003579 377 IAFDCAEIRERDWCNVVTCHMDTAQAYVWRLQNFVLGEHILRPCPENPTAVKACTISACGNFAVLGTAGGWIERFNLQSG 456 (809)
Q Consensus 377 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~v~~v~~s~~g~~l~~g~~~g~i~i~~~~~~ 456 (809)
..........+|+.+++..++..++.......|.+|.+...
T Consensus 163 ---------------------------------------r~~~~~~~~~pITgL~~~~d~~s~lFv~Tt~~V~~y~l~gr 203 (933)
T KOG2114|consen 163 ---------------------------------------RQDYSHRGKEPITGLALRSDGKSVLFVATTEQVMLYSLSGR 203 (933)
T ss_pred ---------------------------------------ceeeeccCCCCceeeEEecCCceeEEEEecceeEEEEecCC
Confidence 00001122379999999999988555556677999999844
Q ss_pred ceeeeeeCcccccccCccccEEEEEEcCCCCEEEEEeCcCeEEEEECCCCceeeeee
Q 003579 457 ISRGSYLDMSERSNYAHNGEVVGVACDSTNTLMISAGYHGDIKVWDFKGRDLKSRWE 513 (809)
Q Consensus 457 ~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~ 513 (809)
....... ..|...+.|..+++....+++++. ..+.+|+....++...+.
T Consensus 204 ~p~~~~l-------d~~G~~lnCss~~~~t~qfIca~~-e~l~fY~sd~~~~cfaf~ 252 (933)
T KOG2114|consen 204 TPSLKVL-------DNNGISLNCSSFSDGTYQFICAGS-EFLYFYDSDGRGPCFAFE 252 (933)
T ss_pred Ccceeee-------ccCCccceeeecCCCCccEEEecC-ceEEEEcCCCcceeeeec
Confidence 4222211 377888999999876654555554 579999988766655555
No 339
>KOG3621 consensus WD40 repeat-containing protein [General function prediction only]
Probab=98.27 E-value=0.00013 Score=78.07 Aligned_cols=118 Identities=19% Similarity=0.243 Sum_probs=90.8
Q ss_pred CCCEEEEEEcCCCCEEEEEeCCCeEEEEEeeCCeEEEEEeccCCCcEEEEEEecCCCCEEEEEcCCCcEEEEECCCcee-
Q 003579 181 GSSISSCVSSPALDVVAVGCSDGKIHVHNVRYDEELVTFTHSMRGAVTALAFSSDGQPLLASGASSGVISIWNLEKRRL- 259 (809)
Q Consensus 181 ~~~I~~l~~sp~~~~la~g~~dg~i~iwd~~~~~~~~~~~~~~~~~V~~l~fs~dg~~~lasg~~dg~I~iwdl~~~~~- 259 (809)
...|.--+++..+++++.|+..|.+.+|+-..++....-.....+.+..++.+++.. ++|.|+..|.|.++-+..+..
T Consensus 33 ~~~v~lTc~dst~~~l~~GsS~G~lyl~~R~~~~~~~~~~~~~~~~~~~~~vs~~e~-lvAagt~~g~V~v~ql~~~~p~ 111 (726)
T KOG3621|consen 33 PARVKLTCVDATEEYLAMGSSAGSVYLYNRHTGEMRKLKNEGATGITCVRSVSSVEY-LVAAGTASGRVSVFQLNKELPR 111 (726)
T ss_pred cceEEEEEeecCCceEEEecccceEEEEecCchhhhcccccCccceEEEEEecchhH-hhhhhcCCceEEeehhhccCCC
Confidence 344555566777899999999999999997766544433333356677777888776 899999999999998876522
Q ss_pred ----eeeeecccccceEEEEEecCCCEEEEEcCCCcEEEEEeeC
Q 003579 260 ----QSVIREAHDNAIISLHFFANEPVLMSASADNSIKMWIFDT 299 (809)
Q Consensus 260 ----~~~~~~~h~~~V~~l~~~~~~~~l~s~s~d~~i~vw~~~~ 299 (809)
+......|...|++++|++++..+++|...|.|..-.++.
T Consensus 112 ~~~~~t~~d~~~~~rVTal~Ws~~~~k~ysGD~~Gkv~~~~L~s 155 (726)
T KOG3621|consen 112 DLDYVTPCDKSHKCRVTALEWSKNGMKLYSGDSQGKVVLTELDS 155 (726)
T ss_pred cceeeccccccCCceEEEEEecccccEEeecCCCceEEEEEech
Confidence 2222234778999999999999999999999999888776
No 340
>KOG1275 consensus PAB-dependent poly(A) ribonuclease, subunit PAN2 [Replication, recombination and repair]
Probab=98.25 E-value=2.5e-05 Score=85.37 Aligned_cols=184 Identities=15% Similarity=0.188 Sum_probs=139.5
Q ss_pred CEEEEEeCCCeEEEEeCCCCceEEEEcCCCCCEEEEEEcCCCCEEEEEeCCCeEEEEEeeCCeEEEEEeccCCCcEEEEE
Q 003579 152 NKVIVGSQEGSLQLWNISTKKKLYEFKGWGSSISSCVSSPALDVVAVGCSDGKIHVHNVRYDEELVTFTHSMRGAVTALA 231 (809)
Q Consensus 152 ~~l~~~~~dg~i~lwd~~~~~~~~~~~~~~~~I~~l~~sp~~~~la~g~~dg~i~iwd~~~~~~~~~~~~~~~~~V~~l~ 231 (809)
..++.|+-+..+..+|+++.+..+...-..+.|+-|+. +++++.+|...|+|.+-|..+.+.+.++..| .+.|.++.
T Consensus 148 ~~~i~Gg~Q~~li~~Dl~~~~e~r~~~v~a~~v~imR~--Nnr~lf~G~t~G~V~LrD~~s~~~iht~~aH-s~siSDfD 224 (1118)
T KOG1275|consen 148 STLIMGGLQEKLIHIDLNTEKETRTTNVSASGVTIMRY--NNRNLFCGDTRGTVFLRDPNSFETIHTFDAH-SGSISDFD 224 (1118)
T ss_pred cceeecchhhheeeeecccceeeeeeeccCCceEEEEe--cCcEEEeecccceEEeecCCcCceeeeeecc-ccceeeee
Confidence 44888889999999999999988887765666777765 4789999999999999999999999999987 78887766
Q ss_pred EecCCCCEEEEEcC---------CCcEEEEECCCceeeeeeecccccceEEEEEecCC-CEEEEEcCCCcEEEEEeeCCC
Q 003579 232 FSSDGQPLLASGAS---------SGVISIWNLEKRRLQSVIREAHDNAIISLHFFANE-PVLMSASADNSIKMWIFDTTD 301 (809)
Q Consensus 232 fs~dg~~~lasg~~---------dg~I~iwdl~~~~~~~~~~~~h~~~V~~l~~~~~~-~~l~s~s~d~~i~vw~~~~~~ 301 (809)
.. |+ +|++++. |..|+|||++.-+.+.-+. -+.++ .-+.|.|.- ..++.++..|...+-|...-.
T Consensus 225 v~--GN-lLitCG~S~R~~~l~~D~FvkVYDLRmmral~PI~-~~~~P-~flrf~Psl~t~~~V~S~sGq~q~vd~~~ls 299 (1118)
T KOG1275|consen 225 VQ--GN-LLITCGYSMRRYNLAMDPFVKVYDLRMMRALSPIQ-FPYGP-QFLRFHPSLTTRLAVTSQSGQFQFVDTATLS 299 (1118)
T ss_pred cc--CC-eEEEeecccccccccccchhhhhhhhhhhccCCcc-cccCc-hhhhhcccccceEEEEecccceeeccccccC
Confidence 54 66 7777764 4568999999887776665 34433 566777753 367777888888887632222
Q ss_pred CCceeEEeccCCCCCCeeEEEecCCCEEEEEECCCCEEEEEe
Q 003579 302 GDPRLLRFRSGHSAPPLCIRFYANGRHILSAGQDRAFRLFSV 343 (809)
Q Consensus 302 ~~~~~~~~~~~h~~~v~~i~~~~~~~~l~s~~~dg~i~~wd~ 343 (809)
..+.-..........+..+.++++|+.++.+..+|.|.+|.-
T Consensus 300 NP~~~~~~v~p~~s~i~~fDiSsn~~alafgd~~g~v~~wa~ 341 (1118)
T KOG1275|consen 300 NPPAGVKMVNPNGSGISAFDISSNGDALAFGDHEGHVNLWAD 341 (1118)
T ss_pred CCccceeEEccCCCcceeEEecCCCceEEEecccCcEeeecC
Confidence 111222223344455899999999999999999999999983
No 341
>COG3391 Uncharacterized conserved protein [Function unknown]
Probab=98.21 E-value=0.0039 Score=66.55 Aligned_cols=279 Identities=12% Similarity=0.133 Sum_probs=182.1
Q ss_pred EEEEECCCceeeeeeecccccceEEEEEecCCCEEEEEc-CCCcEEEEEeeCCCCCceeEEeccCCCCCCeeEEEecCCC
Q 003579 249 ISIWNLEKRRLQSVIREAHDNAIISLHFFANEPVLMSAS-ADNSIKMWIFDTTDGDPRLLRFRSGHSAPPLCIRFYANGR 327 (809)
Q Consensus 249 I~iwdl~~~~~~~~~~~~h~~~V~~l~~~~~~~~l~s~s-~d~~i~vw~~~~~~~~~~~~~~~~~h~~~v~~i~~~~~~~ 327 (809)
+.+++..+.+....+. .+. ....+.+.+++..+.... ..+.+... +.... ........-......+..++.+.
T Consensus 13 ~~v~~~~~~~~~~~~~-~~~-~~~~v~~~~~g~~~~v~~~~~~~~~~~--~~~~n--~~~~~~~~g~~~p~~i~v~~~~~ 86 (381)
T COG3391 13 VSVINTGTNKVTAAIS-LGR-GPGGVAVNPDGTQVYVANSGSNDVSVI--DATSN--TVTQSLSVGGVYPAGVAVNPAGN 86 (381)
T ss_pred eEEEeecccEEEEEee-cCC-CCceeEEcCccCEEEEEeecCceeeec--ccccc--eeeeeccCCCccccceeeCCCCC
Confidence 6666666666555554 222 566777788775444333 22233333 22211 11111111114456788888777
Q ss_pred EEEE-EECCCCEEEEEeeecccceecchhhHHHHHhhccchhhhhccCceeEEeeccccccccceeEEeecCCceEEEEE
Q 003579 328 HILS-AGQDRAFRLFSVIQDQQSRELSQRHVAKRARKLKMKEEELKLKPVIAFDCAEIRERDWCNVVTCHMDTAQAYVWR 406 (809)
Q Consensus 328 ~l~s-~~~dg~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~ 406 (809)
.++. ...+..+.+.|............
T Consensus 87 ~vyv~~~~~~~v~vid~~~~~~~~~~~v---------------------------------------------------- 114 (381)
T COG3391 87 KVYVTTGDSNTVSVIDTATNTVLGSIPV---------------------------------------------------- 114 (381)
T ss_pred eEEEecCCCCeEEEEcCcccceeeEeee----------------------------------------------------
Confidence 5544 44457788888544333222211
Q ss_pred eeeeeecceeeecCCCCCCCeEEEEEcCCCCEEEEEeC---CCcEEEEECCCCceeeeeeCcccccccCccccEEEEEEc
Q 003579 407 LQNFVLGEHILRPCPENPTAVKACTISACGNFAVLGTA---GGWIERFNLQSGISRGSYLDMSERSNYAHNGEVVGVACD 483 (809)
Q Consensus 407 ~~~~~~~~~~~~~~~~~~~~v~~v~~s~~g~~l~~g~~---~g~i~i~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~ 483 (809)
......++++++++.+.++.. ++.+.+.|..++........ +. .+ ..++++
T Consensus 115 -----------------G~~P~~~~~~~~~~~vYV~n~~~~~~~vsvid~~t~~~~~~~~v-------G~-~P-~~~a~~ 168 (381)
T COG3391 115 -----------------GLGPVGLAVDPDGKYVYVANAGNGNNTVSVIDAATNKVTATIPV-------GN-TP-TGVAVD 168 (381)
T ss_pred -----------------ccCCceEEECCCCCEEEEEecccCCceEEEEeCCCCeEEEEEec-------CC-Cc-ceEEEC
Confidence 025567899999999888877 68999999999888877431 22 23 899999
Q ss_pred CCCCEEEEEe-CcCeEEEEECCCCceee-----eeecCCCeEEEEEeeCCCEEEEEeCC---CeEEEEEcCCCeEEEE-E
Q 003579 484 STNTLMISAG-YHGDIKVWDFKGRDLKS-----RWEVGCSLVKIVYHRVNGLLATVADD---LVIRLFDVVALRMVRK-F 553 (809)
Q Consensus 484 ~~~~~l~s~~-~dg~i~iwd~~~~~~~~-----~~~~~~~i~~~~~s~~~~~la~~~~d---~~I~v~d~~~~~~~~~-~ 553 (809)
|++..++.+. .++.|.+.|........ ..........+.+.+++..+.+.... +.+...|..++..... .
T Consensus 169 p~g~~vyv~~~~~~~v~vi~~~~~~v~~~~~~~~~~~~~~P~~i~v~~~g~~~yV~~~~~~~~~v~~id~~~~~v~~~~~ 248 (381)
T COG3391 169 PDGNKVYVTNSDDNTVSVIDTSGNSVVRGSVGSLVGVGTGPAGIAVDPDGNRVYVANDGSGSNNVLKIDTATGNVTATDL 248 (381)
T ss_pred CCCCeEEEEecCCCeEEEEeCCCcceeccccccccccCCCCceEEECCCCCEEEEEeccCCCceEEEEeCCCceEEEecc
Confidence 9998666555 78999999987776663 23444667789999999977776554 5999999999887665 2
Q ss_pred ecCCCCeeeEEECCCCCEEEEEe-CCCeEEEEEcCCccEEEEeeeCcc----eEEEEEcCCCC
Q 003579 554 EGHTDRITDFCFSEDGKWLLSSG-MDGSLRIWDVILARQIDAIHVDVS----ITALSLSPNMD 611 (809)
Q Consensus 554 ~~h~~~I~~l~fspdg~~l~s~s-~D~~I~vwd~~~~~~i~~~~~~~~----v~~l~~spdg~ 611 (809)
..-......+.++|+|+++.+.. ..+.+.+-|..+......+..... +..+++.+...
T Consensus 249 ~~~~~~~~~v~~~p~g~~~yv~~~~~~~V~vid~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~ 311 (381)
T COG3391 249 PVGSGAPRGVAVDPAGKAAYVANSQGGTVSVIDGATDRVVKTGPTGNEALGEPVSIAISPLYD 311 (381)
T ss_pred ccccCCCCceeECCCCCEEEEEecCCCeEEEEeCCCCceeeeecccccccccceeccceeecc
Confidence 22111456789999999988774 448899999999888877664443 66666666544
No 342
>PF06977 SdiA-regulated: SdiA-regulated; InterPro: IPR009722 This entry represents a conserved region approximately 100 residues long within a number of hypothetical bacterial proteins that may be regulated by SdiA, a member of the LuxR family of transcriptional regulators []. Some proteins contain the IPR001258 from INTERPRO repeat.; PDB: 3QQZ_A.
Probab=98.20 E-value=0.0012 Score=64.60 Aligned_cols=214 Identities=12% Similarity=0.117 Sum_probs=119.6
Q ss_pred CCcEEEEEEecCCCCEEEEEcCCCcEEEEECCCceeeeeeecccccceEEEEEecCCCEEEEEcCCCcEEEEEeeCCCCC
Q 003579 224 RGAVTALAFSSDGQPLLASGASSGVISIWNLEKRRLQSVIREAHDNAIISLHFFANEPVLMSASADNSIKMWIFDTTDGD 303 (809)
Q Consensus 224 ~~~V~~l~fs~dg~~~lasg~~dg~I~iwdl~~~~~~~~~~~~h~~~V~~l~~~~~~~~l~s~s~d~~i~vw~~~~~~~~ 303 (809)
...+..|+|.|+...++++....+.|..+++ +|+.+..+...-.+..-++++..++.++++.-.++.+.++.++.....
T Consensus 21 ~~e~SGLTy~pd~~tLfaV~d~~~~i~els~-~G~vlr~i~l~g~~D~EgI~y~g~~~~vl~~Er~~~L~~~~~~~~~~~ 99 (248)
T PF06977_consen 21 LDELSGLTYNPDTGTLFAVQDEPGEIYELSL-DGKVLRRIPLDGFGDYEGITYLGNGRYVLSEERDQRLYIFTIDDDTTS 99 (248)
T ss_dssp -S-EEEEEEETTTTEEEEEETTTTEEEEEET-T--EEEEEE-SS-SSEEEEEE-STTEEEEEETTTTEEEEEEE----TT
T ss_pred cCCccccEEcCCCCeEEEEECCCCEEEEEcC-CCCEEEEEeCCCCCCceeEEEECCCEEEEEEcCCCcEEEEEEeccccc
Confidence 3469999999987768888889999999997 478888877444567889999988877777767899999988554322
Q ss_pred cee--EE-----eccCCCCCCeeEEEecCCCEEEEEECCCCEEEEEeeecc---cceecchhhHHHHHhhccchhhhhcc
Q 003579 304 PRL--LR-----FRSGHSAPPLCIRFYANGRHILSAGQDRAFRLFSVIQDQ---QSRELSQRHVAKRARKLKMKEEELKL 373 (809)
Q Consensus 304 ~~~--~~-----~~~~h~~~v~~i~~~~~~~~l~s~~~dg~i~~wd~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~ 373 (809)
... .. ....+...+-.++|.+.++.|+.+-......++.+.... ............
T Consensus 100 ~~~~~~~~~~l~~~~~~N~G~EGla~D~~~~~L~v~kE~~P~~l~~~~~~~~~~~~~~~~~~~~~~-------------- 165 (248)
T PF06977_consen 100 LDRADVQKISLGFPNKGNKGFEGLAYDPKTNRLFVAKERKPKRLYEVNGFPGGFDLFVSDDQDLDD-------------- 165 (248)
T ss_dssp --EEEEEEEE---S---SS--EEEEEETTTTEEEEEEESSSEEEEEEESTT-SS--EEEE-HHHH---------------
T ss_pred cchhhceEEecccccCCCcceEEEEEcCCCCEEEEEeCCCChhhEEEccccCccceeecccccccc--------------
Confidence 111 11 112355678999999988888888777777888876521 111000000000
Q ss_pred CceeEEeeccccccccceeEEeecCCceEEEEEeeeeeecceeeecCCCCCCCeEEEEEcCC-CCEEEEEeCCCcEEEEE
Q 003579 374 KPVIAFDCAEIRERDWCNVVTCHMDTAQAYVWRLQNFVLGEHILRPCPENPTAVKACTISAC-GNFAVLGTAGGWIERFN 452 (809)
Q Consensus 374 ~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~v~~v~~s~~-g~~l~~g~~~g~i~i~~ 452 (809)
.......+.++++.|. |++++....+..+..+|
T Consensus 166 ----------------------------------------------~~~~~~d~S~l~~~p~t~~lliLS~es~~l~~~d 199 (248)
T PF06977_consen 166 ----------------------------------------------DKLFVRDLSGLSYDPRTGHLLILSDESRLLLELD 199 (248)
T ss_dssp ----------------------------------------------HT--SS---EEEEETTTTEEEEEETTTTEEEEE-
T ss_pred ----------------------------------------------ccceeccccceEEcCCCCeEEEEECCCCeEEEEC
Confidence 0011145677888874 56777777788888888
Q ss_pred CCCCceeeeeeCccc-ccccCccccEEEEEEcCCCCEEEEEeCcCeEEE
Q 003579 453 LQSGISRGSYLDMSE-RSNYAHNGEVVGVACDSTNTLMISAGYHGDIKV 500 (809)
Q Consensus 453 ~~~~~~~~~~~~~~~-~~~~~h~~~v~~l~~~~~~~~l~s~~~dg~i~i 500 (809)
..|.....+..... ..+...-...-+|+++++|++.+++ .-+..++
T Consensus 200 -~~G~~~~~~~L~~g~~gl~~~~~QpEGIa~d~~G~LYIvs-EpNlfy~ 246 (248)
T PF06977_consen 200 -RQGRVVSSLSLDRGFHGLSKDIPQPEGIAFDPDGNLYIVS-EPNLFYR 246 (248)
T ss_dssp -TT--EEEEEE-STTGGG-SS---SEEEEEE-TT--EEEEE-TTTEEEE
T ss_pred -CCCCEEEEEEeCCcccCcccccCCccEEEECCCCCEEEEc-CCceEEE
Confidence 55665554432110 0111122467899999999766654 4444433
No 343
>PF04053 Coatomer_WDAD: Coatomer WD associated region ; InterPro: IPR006692 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the WD-associated region found in coatomer subunits alpha, beta and beta' subunits. The alpha-subunit (RET1P) of the coatomer complex in Saccharomyces cerevisiae (Baker's yeast), participates in membrane transport between the endoplasmic reticulum and Golgi apparatus. The protein contains six WD-40 repeat motifs in its N-terminal region []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006886 intracellular protein transport, 0016192 vesicle-mediated transport, 0030117 membrane coat; PDB: 3MKQ_B.
Probab=98.19 E-value=0.00033 Score=74.97 Aligned_cols=183 Identities=16% Similarity=0.130 Sum_probs=100.1
Q ss_pred CCeEEEEEcCCCCEEEEEeCCCcEEEEECCCCceeeeeeCcccccccCccccEEEEEEcCCCCEEEEEeCcCeEEEEECC
Q 003579 425 TAVKACTISACGNFAVLGTAGGWIERFNLQSGISRGSYLDMSERSNYAHNGEVVGVACDSTNTLMISAGYHGDIKVWDFK 504 (809)
Q Consensus 425 ~~v~~v~~s~~g~~l~~g~~~g~i~i~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~l~s~~~dg~i~iwd~~ 504 (809)
+.....+|.+.++ +++-..++.|.++.--.......+. ....+..+.. |.+|...+.+ .|.+||+.
T Consensus 69 G~g~~~vw~~~n~-yAv~~~~~~I~I~kn~~~~~~k~i~---------~~~~~~~If~---G~LL~~~~~~-~i~~yDw~ 134 (443)
T PF04053_consen 69 GSGLSFVWSSRNR-YAVLESSSTIKIYKNFKNEVVKSIK---------LPFSVEKIFG---GNLLGVKSSD-FICFYDWE 134 (443)
T ss_dssp EE-SEEEE-TSSE-EEEE-TTS-EEEEETTEE-TT--------------SS-EEEEE----SSSEEEEETT-EEEEE-TT
T ss_pred CceeEEEEecCcc-EEEEECCCeEEEEEcCccccceEEc---------CCcccceEEc---CcEEEEECCC-CEEEEEhh
Confidence 3445677888555 5555558889996433333322222 1123444433 7777766654 89999999
Q ss_pred CCceeeeeecCCCeEEEEEeeCCCEEEEEeCCCeEEEEEcCCC-----------eEEEEEecCCCCeeeEEECCCCCEEE
Q 003579 505 GRDLKSRWEVGCSLVKIVYHRVNGLLATVADDLVIRLFDVVAL-----------RMVRKFEGHTDRITDFCFSEDGKWLL 573 (809)
Q Consensus 505 ~~~~~~~~~~~~~i~~~~~s~~~~~la~~~~d~~I~v~d~~~~-----------~~~~~~~~h~~~I~~l~fspdg~~l~ 573 (809)
+++.++.+.... +..+.|++++.++|..+.+ .+.+++.+.. .....+..-...|.+.+|..| .++
T Consensus 135 ~~~~i~~i~v~~-vk~V~Ws~~g~~val~t~~-~i~il~~~~~~~~~~~~~g~e~~f~~~~E~~~~IkSg~W~~d--~fi 210 (443)
T PF04053_consen 135 TGKLIRRIDVSA-VKYVIWSDDGELVALVTKD-SIYILKYNLEAVAAIPEEGVEDAFELIHEISERIKSGCWVED--CFI 210 (443)
T ss_dssp T--EEEEESS-E--EEEEE-TTSSEEEEE-S--SEEEEEE-HHHHHHBTTTB-GGGEEEEEEE-S--SEEEEETT--EEE
T ss_pred HcceeeEEecCC-CcEEEEECCCCEEEEEeCC-eEEEEEecchhcccccccCchhceEEEEEecceeEEEEEEcC--EEE
Confidence 999999998765 8999999999999999865 6777665432 022233222578999999877 455
Q ss_pred EEeCCCeEEEEEcCCccEEEEeeeCcceEEEEEcCCCCeEEEEEeCCCeEEEeecC
Q 003579 574 SSGMDGSLRIWDVILARQIDAIHVDVSITALSLSPNMDVLATAHVDQNGVYLWVNR 629 (809)
Q Consensus 574 s~s~D~~I~vwd~~~~~~i~~~~~~~~v~~l~~spdg~~lat~~~d~~~i~lW~~~ 629 (809)
-.+.. .++. +..|+.--.-....++.=+...|..+.+.....+++ |..+.+.
T Consensus 211 YtT~~-~lkY--l~~Ge~~~i~~ld~~~yllgy~~~~~~ly~~Dr~~~-v~~~~ld 262 (443)
T PF04053_consen 211 YTTSN-HLKY--LVNGETGIIAHLDKPLYLLGYLPKENRLYLIDRDGN-VISYELD 262 (443)
T ss_dssp EE-TT-EEEE--EETTEEEEEEE-SS--EEEEEETTTTEEEEE-TT---EEEEE--
T ss_pred EEcCC-eEEE--EEcCCcceEEEcCCceEEEEEEccCCEEEEEECCCC-EEEEEEC
Confidence 44444 6776 555655444445667777777787777888777774 7777653
No 344
>TIGR03075 PQQ_enz_alc_DH PQQ-dependent dehydrogenase, methanol/ethanol family. This protein family has a phylogenetic distribution very similar to that coenzyme PQQ biosynthesis enzymes, as shown by partial phylogenetic profiling. Genes in this family often are found adjacent to the PQQ biosynthesis genes themselves. An unusual, strained disulfide bond between adjacent Cys residues contributes to PQQ-binding, as does a Trp residue that is part of a PQQ enzyme repeat (see pfam01011). Characterized members include the dehydrogenase subunit of a membrane-anchored, three subunit alcohol (ethanol) dehydrogenase of Gluconobacter suboxydans, a homodimeric ethanol dehydrogenase in Pseudomonas aeruginosa, and the large subunit of an alpha2/beta2 heterotetrameric methanol dehydrogenase in Methylobacterium extorquens.
Probab=98.18 E-value=0.0082 Score=66.71 Aligned_cols=69 Identities=14% Similarity=0.175 Sum_probs=49.4
Q ss_pred CCEEEEEeCCCeEEEEEeeCCeEEEEEeccCCCcEEE----------EEEecCCCCEEEEEcCCCcEEEEECCCceeeee
Q 003579 193 LDVVAVGCSDGKIHVHNVRYDEELVTFTHSMRGAVTA----------LAFSSDGQPLLASGASSGVISIWNLEKRRLQSV 262 (809)
Q Consensus 193 ~~~la~g~~dg~i~iwd~~~~~~~~~~~~~~~~~V~~----------l~fs~dg~~~lasg~~dg~I~iwdl~~~~~~~~ 262 (809)
+..|.+++.++.|.-.|..+|+.+-++.......+.. +++. ++ .++.++.++.|.-.|.++|+.+..
T Consensus 69 ~g~vyv~s~~g~v~AlDa~TGk~lW~~~~~~~~~~~~~~~~~~~~rg~av~-~~--~v~v~t~dg~l~ALDa~TGk~~W~ 145 (527)
T TIGR03075 69 DGVMYVTTSYSRVYALDAKTGKELWKYDPKLPDDVIPVMCCDVVNRGVALY-DG--KVFFGTLDARLVALDAKTGKVVWS 145 (527)
T ss_pred CCEEEEECCCCcEEEEECCCCceeeEecCCCCcccccccccccccccceEE-CC--EEEEEcCCCEEEEEECCCCCEEee
Confidence 5678888888999999999999888876432211211 1222 23 466778899999999999998877
Q ss_pred ee
Q 003579 263 IR 264 (809)
Q Consensus 263 ~~ 264 (809)
..
T Consensus 146 ~~ 147 (527)
T TIGR03075 146 KK 147 (527)
T ss_pred cc
Confidence 65
No 345
>PF11768 DUF3312: Protein of unknown function (DUF3312); InterPro: IPR024511 This is a eukaryotic family of uncharacterised proteins that contain WD40 repeats.
Probab=98.16 E-value=0.0078 Score=64.02 Aligned_cols=77 Identities=12% Similarity=0.125 Sum_probs=66.7
Q ss_pred CccccEEEEEEcCCCCEEEEEeCcCeEEEEECCCCceeeeeecCCCeEEEEEeeCCCEEEEEeCCCeEEEEEcCCCeE
Q 003579 472 AHNGEVVGVACDSTNTLMISAGYHGDIKVWDFKGRDLKSRWEVGCSLVKIVYHRVNGLLATVADDLVIRLFDVVALRM 549 (809)
Q Consensus 472 ~h~~~v~~l~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~i~~~~~s~~~~~la~~~~d~~I~v~d~~~~~~ 549 (809)
.....|.+.+++|+.+.++.|+.||.|.+||...+.... ....-.++.++|||+|.++++|++.|.+.+||+.-...
T Consensus 257 pL~s~v~~ca~sp~E~kLvlGC~DgSiiLyD~~~~~t~~-~ka~~~P~~iaWHp~gai~~V~s~qGelQ~FD~ALspi 333 (545)
T PF11768_consen 257 PLPSQVICCARSPSEDKLVLGCEDGSIILYDTTRGVTLL-AKAEFIPTLIAWHPDGAIFVVGSEQGELQCFDMALSPI 333 (545)
T ss_pred ecCCcceEEecCcccceEEEEecCCeEEEEEcCCCeeee-eeecccceEEEEcCCCcEEEEEcCCceEEEEEeecCcc
Confidence 677899999999999999999999999999987764433 35567789999999999999999999999999875433
No 346
>KOG2066 consensus Vacuolar assembly/sorting protein VPS41 [Intracellular trafficking, secretion, and vesicular transport]
Probab=98.16 E-value=7.3e-05 Score=80.95 Aligned_cols=184 Identities=12% Similarity=0.180 Sum_probs=128.3
Q ss_pred cccEEEEEEeCCEEEEEeCCCcEEEEEcCCCccccceeeeEEcCCccccEEEEeCCCCCCEEEEEeCCCeEEEEeCCCCc
Q 003579 93 SAKVNLLLLFGEHILSIDIDGNMFIWAFKGIEENLAPVGHVKLDDKFTPTCIMHPDTYLNKVIVGSQEGSLQLWNISTKK 172 (809)
Q Consensus 93 ~~~V~~l~~~g~~l~s~~~dg~i~vWd~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~l~~~~~dg~i~lwd~~~~~ 172 (809)
...+.+.++.+.+++-|+.+|.|++.+.+.... +...+... .-+| .++++|+.||+|.|-.+-+.+
T Consensus 39 ~D~is~~av~~~~~~~GtH~g~v~~~~~~~~~~------~~~~~s~~------~~~G--ey~asCS~DGkv~I~sl~~~~ 104 (846)
T KOG2066|consen 39 NDAISCCAVHDKFFALGTHRGAVYLTTCQGNPK------TNFDHSSS------ILEG--EYVASCSDDGKVVIGSLFTDD 104 (846)
T ss_pred hhHHHHHHhhcceeeeccccceEEEEecCCccc------cccccccc------ccCC--ceEEEecCCCcEEEeeccCCc
Confidence 345667777899999999999999998765421 11111111 3345 789999999999999998888
Q ss_pred eEEEEcCCCCCEEEEEEcCC-----CCEEEEEeCCCeEEEEEeeC-CeEEEEEeccCCCcEEEEEEecCCCCEEEEEcCC
Q 003579 173 KLYEFKGWGSSISSCVSSPA-----LDVVAVGCSDGKIHVHNVRY-DEELVTFTHSMRGAVTALAFSSDGQPLLASGASS 246 (809)
Q Consensus 173 ~~~~~~~~~~~I~~l~~sp~-----~~~la~g~~dg~i~iwd~~~-~~~~~~~~~~~~~~V~~l~fs~dg~~~lasg~~d 246 (809)
...++.- ..++.+++++|+ .+.+++|+.-| +.++.-.- |...........|+|.++.|..+ ++|-++.+
T Consensus 105 ~~~~~df-~rpiksial~Pd~~~~~sk~fv~GG~ag-lvL~er~wlgnk~~v~l~~~eG~I~~i~W~g~---lIAWand~ 179 (846)
T KOG2066|consen 105 EITQYDF-KRPIKSIALHPDFSRQQSKQFVSGGMAG-LVLSERNWLGNKDSVVLSEGEGPIHSIKWRGN---LIAWANDD 179 (846)
T ss_pred cceeEec-CCcceeEEeccchhhhhhhheeecCcce-EEEehhhhhcCccceeeecCccceEEEEecCc---EEEEecCC
Confidence 7776654 578999999998 46888998888 77775331 11111122333789999999844 77777766
Q ss_pred CcEEEEECCCceeeeeeeccccc-----ceEEEEEecCCCEEEEEcCCCcEEEEEee
Q 003579 247 GVISIWNLEKRRLQSVIREAHDN-----AIISLHFFANEPVLMSASADNSIKMWIFD 298 (809)
Q Consensus 247 g~I~iwdl~~~~~~~~~~~~h~~-----~V~~l~~~~~~~~l~s~s~d~~i~vw~~~ 298 (809)
| |++||..+++.+..+...+.. --..+.|.++.+ |+.|= .-+|++..+.
T Consensus 180 G-v~vyd~~~~~~l~~i~~p~~~~R~e~fpphl~W~~~~~-LVIGW-~d~v~i~~I~ 233 (846)
T KOG2066|consen 180 G-VKVYDTPTRQRLTNIPPPSQSVRPELFPPHLHWQDEDR-LVIGW-GDSVKICSIK 233 (846)
T ss_pred C-cEEEeccccceeeccCCCCCCCCcccCCCceEecCCCe-EEEec-CCeEEEEEEe
Confidence 5 999999999988888744421 234577776654 44443 3468888776
No 347
>PF14583 Pectate_lyase22: Oligogalacturonate lyase; PDB: 3C5M_C 3PE7_A.
Probab=98.15 E-value=0.0017 Score=66.53 Aligned_cols=180 Identities=15% Similarity=0.133 Sum_probs=93.7
Q ss_pred EEeCCCCCCEEEEEeC---CCeEEEEeCCCCceEEEEcCCCCCEEEEEEcCCCCEEEEEeCCCeEEEEEeeCCeEEEEEe
Q 003579 144 IMHPDTYLNKVIVGSQ---EGSLQLWNISTKKKLYEFKGWGSSISSCVSSPALDVVAVGCSDGKIHVHNVRYDEELVTFT 220 (809)
Q Consensus 144 ~~~p~~~~~~l~~~~~---dg~i~lwd~~~~~~~~~~~~~~~~I~~l~~sp~~~~la~g~~dg~i~iwd~~~~~~~~~~~ 220 (809)
+|.+++ ++|+.++. ...+.+.|+.+++..+.-.+..........+|+.+.++-......|+-.|+.+.+....+.
T Consensus 42 ~ft~dG--~kllF~s~~dg~~nly~lDL~t~~i~QLTdg~g~~~~g~~~s~~~~~~~Yv~~~~~l~~vdL~T~e~~~vy~ 119 (386)
T PF14583_consen 42 CFTDDG--RKLLFASDFDGNRNLYLLDLATGEITQLTDGPGDNTFGGFLSPDDRALYYVKNGRSLRRVDLDTLEERVVYE 119 (386)
T ss_dssp -B-TTS---EEEEEE-TTSS-EEEEEETTT-EEEE---SS-B-TTT-EE-TTSSEEEEEETTTEEEEEETTT--EEEEEE
T ss_pred CcCCCC--CEEEEEeccCCCcceEEEEcccCEEEECccCCCCCccceEEecCCCeEEEEECCCeEEEEECCcCcEEEEEE
Confidence 466777 67777665 4568888999998877655432323345667888887766566789999999887655554
Q ss_pred ccCCCcEEEEEEec--CCCCEEEEEc---C-------------------CCcEEEEECCCceeeeeeecccccceEEEEE
Q 003579 221 HSMRGAVTALAFSS--DGQPLLASGA---S-------------------SGVISIWNLEKRRLQSVIREAHDNAIISLHF 276 (809)
Q Consensus 221 ~~~~~~V~~l~fs~--dg~~~lasg~---~-------------------dg~I~iwdl~~~~~~~~~~~~h~~~V~~l~~ 276 (809)
.. .+.+-...|.. |+. .++-.- . ...|.-.|+.+|+....+. -...+..+.|
T Consensus 120 ~p-~~~~g~gt~v~n~d~t-~~~g~e~~~~d~~~l~~~~~f~e~~~a~p~~~i~~idl~tG~~~~v~~--~~~wlgH~~f 195 (386)
T PF14583_consen 120 VP-DDWKGYGTWVANSDCT-KLVGIEISREDWKPLTKWKGFREFYEARPHCRIFTIDLKTGERKVVFE--DTDWLGHVQF 195 (386)
T ss_dssp ---TTEEEEEEEEE-TTSS-EEEEEEEEGGG-----SHHHHHHHHHC---EEEEEEETTT--EEEEEE--ESS-EEEEEE
T ss_pred CC-cccccccceeeCCCcc-EEEEEEEeehhccCccccHHHHHHHhhCCCceEEEEECCCCceeEEEe--cCccccCccc
Confidence 43 55565566653 444 333211 1 2346667888887665554 4567889999
Q ss_pred ecCCCEEEEEc----CCCc-EEEEEeeCCCCCceeEEeccCCCCCCeeEEEecCCCEEE
Q 003579 277 FANEPVLMSAS----ADNS-IKMWIFDTTDGDPRLLRFRSGHSAPPLCIRFYANGRHIL 330 (809)
Q Consensus 277 ~~~~~~l~s~s----~d~~-i~vw~~~~~~~~~~~~~~~~~h~~~v~~i~~~~~~~~l~ 330 (809)
+|..+.+++=+ .+.. -|||-++......+.+.... -...+..=-|.+||..|.
T Consensus 196 sP~dp~li~fCHEGpw~~Vd~RiW~i~~dg~~~~~v~~~~-~~e~~gHEfw~~DG~~i~ 253 (386)
T PF14583_consen 196 SPTDPTLIMFCHEGPWDLVDQRIWTINTDGSNVKKVHRRM-EGESVGHEFWVPDGSTIW 253 (386)
T ss_dssp ETTEEEEEEEEE-S-TTTSS-SEEEEETTS---EESS----TTEEEEEEEE-TTSS-EE
T ss_pred CCCCCCEEEEeccCCcceeceEEEEEEcCCCcceeeecCC-CCcccccccccCCCCEEE
Confidence 99777555533 2332 48898887665444432221 111222233666776554
No 348
>PF14583 Pectate_lyase22: Oligogalacturonate lyase; PDB: 3C5M_C 3PE7_A.
Probab=98.09 E-value=0.018 Score=59.20 Aligned_cols=170 Identities=19% Similarity=0.193 Sum_probs=85.4
Q ss_pred EEEEECCCCceeeeeeCcccccccCccccEEEEEEcCCCCEEEEEeCcC-----eEEEEEC--CCCceeeee--ecCCCe
Q 003579 448 IERFNLQSGISRGSYLDMSERSNYAHNGEVVGVACDSTNTLMISAGYHG-----DIKVWDF--KGRDLKSRW--EVGCSL 518 (809)
Q Consensus 448 i~i~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~l~s~~~dg-----~i~iwd~--~~~~~~~~~--~~~~~i 518 (809)
|...|+.+|+....+ .-...+..+.++|....++.-+..| .-|||-+ ......... .....+
T Consensus 170 i~~idl~tG~~~~v~---------~~~~wlgH~~fsP~dp~li~fCHEGpw~~Vd~RiW~i~~dg~~~~~v~~~~~~e~~ 240 (386)
T PF14583_consen 170 IFTIDLKTGERKVVF---------EDTDWLGHVQFSPTDPTLIMFCHEGPWDLVDQRIWTINTDGSNVKKVHRRMEGESV 240 (386)
T ss_dssp EEEEETTT--EEEEE---------EESS-EEEEEEETTEEEEEEEEE-S-TTTSS-SEEEEETTS---EESS---TTEEE
T ss_pred EEEEECCCCceeEEE---------ecCccccCcccCCCCCCEEEEeccCCcceeceEEEEEEcCCCcceeeecCCCCccc
Confidence 445566666655544 2345567888898776555554333 1255544 333222221 222455
Q ss_pred EEEEEeeCCCEEEEEeC-----CCeEEEEEcCCCeEEEEEecCCCCeeeEEECCCCCEEEEEeCCC--------------
Q 003579 519 VKIVYHRVNGLLATVAD-----DLVIRLFDVVALRMVRKFEGHTDRITDFCFSEDGKWLLSSGMDG-------------- 579 (809)
Q Consensus 519 ~~~~~s~~~~~la~~~~-----d~~I~v~d~~~~~~~~~~~~h~~~I~~l~fspdg~~l~s~s~D~-------------- 579 (809)
..=-|.|||..+..-+. +..|.-+|..+++...... ......+--++||++++-=+.|.
T Consensus 241 gHEfw~~DG~~i~y~~~~~~~~~~~i~~~d~~t~~~~~~~~--~p~~~H~~ss~Dg~L~vGDG~d~p~~v~~~~~~~~~~ 318 (386)
T PF14583_consen 241 GHEFWVPDGSTIWYDSYTPGGQDFWIAGYDPDTGERRRLME--MPWCSHFMSSPDGKLFVGDGGDAPVDVADAGGYKIEN 318 (386)
T ss_dssp EEEEE-TTSS-EEEEEEETTT--EEEEEE-TTT--EEEEEE--E-SEEEEEE-TTSSEEEEEE-----------------
T ss_pred ccccccCCCCEEEEEeecCCCCceEEEeeCCCCCCceEEEe--CCceeeeEEcCCCCEEEecCCCCCccccccccceecC
Confidence 56678999987765332 4567778888876543222 22445666789999887433332
Q ss_pred --eEEEEEcCCccEEEEeeeCc-----------ceEEEEEcCCCCeEEEEEeCCCeEEEeec
Q 003579 580 --SLRIWDVILARQIDAIHVDV-----------SITALSLSPNMDVLATAHVDQNGVYLWVN 628 (809)
Q Consensus 580 --~I~vwd~~~~~~i~~~~~~~-----------~v~~l~~spdg~~lat~~~d~~~i~lW~~ 628 (809)
.|+++++..++.....++.. .=-.+.|||||++++..+.-.+...||-+
T Consensus 319 ~p~i~~~~~~~~~~~~l~~h~~sw~v~~~~~q~~hPhp~FSPDgk~VlF~Sd~~G~~~vY~v 380 (386)
T PF14583_consen 319 DPWIYLFDVEAGRFRKLARHDTSWKVLDGDRQVTHPHPSFSPDGKWVLFRSDMEGPPAVYLV 380 (386)
T ss_dssp --EEEEEETTTTEEEEEEE-------BTTBSSTT----EE-TTSSEEEEEE-TTSS-EEEEE
T ss_pred CcEEEEeccccCceeeeeeccCcceeecCCCccCCCCCccCCCCCEEEEECCCCCCccEEEE
Confidence 56778888776554333211 13568999999998888776545666543
No 349
>PF03178 CPSF_A: CPSF A subunit region; InterPro: IPR004871 This family includes a region that lies towards the C terminus of the cleavage and polyadenylation specificity factor (CPSF) A (160 kDa) subunit. CPSF is involved in mRNA polyadenylation and binds the AAUAAA conserved sequence in pre-mRNA. CPSF has also been found to be necessary for splicing of single-intron pre-mRNAs []. The function of the aligned region is unknown but may be involved in RNA/DNA binding.; GO: 0003676 nucleic acid binding, 0005634 nucleus; PDB: 2B5M_A 4A0K_C 4A0B_C 3I7L_A 3I8E_A 4A09_A 4A0A_A 3EI4_C 2B5L_A 3I7O_A ....
Probab=98.07 E-value=0.0021 Score=67.26 Aligned_cols=209 Identities=13% Similarity=0.185 Sum_probs=125.7
Q ss_pred CeEEEEEcCccEEEEecC-CCCCCcEEEEEeC-------CeEEEEEC-------------CeEEEEECCe------eEEE
Q 003579 36 KAFHIYNCAKLNLVLVGP-QLPKKIRALASYR-------DYTFAAYG-------------NHIAVVKRAH------QVAT 88 (809)
Q Consensus 36 ~~i~iwd~~~~~~~~~~~-~~~~~I~~la~~~-------~~~~~a~g-------------~~i~vw~~~~------~~~~ 88 (809)
..|++.|..+.+.+.... .....+.+++... ...|++.| +.|.+++..+ ++..
T Consensus 2 s~i~l~d~~~~~~~~~~~l~~~E~~~s~~~~~l~~~~~~~~~~ivVGT~~~~~~~~~~~~Gri~v~~i~~~~~~~~~l~~ 81 (321)
T PF03178_consen 2 SSIRLVDPTTFEVLDSFELEPNEHVTSLCSVKLKGDSTGKKEYIVVGTAFNYGEDPEPSSGRILVFEISESPENNFKLKL 81 (321)
T ss_dssp -EEEEEETTTSSEEEEEEEETTEEEEEEEEEEETTS---SSEEEEEEEEE--TTSSS-S-EEEEEEEECSS-----EEEE
T ss_pred cEEEEEeCCCCeEEEEEECCCCceEEEEEEEEEcCccccccCEEEEEecccccccccccCcEEEEEEEEcccccceEEEE
Confidence 468889988876665442 2345566665432 24555432 3388887654 3333
Q ss_pred --EccccccEEEEEEeCCEEEEEeCCCcEEEEEcCCCc-cccceeeeEEcCCccccEEEEeCCCCCCEEEEEeCCCeEEE
Q 003579 89 --WSRHSAKVNLLLLFGEHILSIDIDGNMFIWAFKGIE-ENLAPVGHVKLDDKFTPTCIMHPDTYLNKVIVGSQEGSLQL 165 (809)
Q Consensus 89 --~~~h~~~V~~l~~~g~~l~s~~~dg~i~vWd~~~~~-~~~~~~~~~~~~~~~~~~~~~~p~~~~~~l~~~~~dg~i~l 165 (809)
-....++|+++...+++|+.+. .+.|.+|++...+ . ...-..+... ....+..-+ ++|++|.....+.+
T Consensus 82 i~~~~~~g~V~ai~~~~~~lv~~~-g~~l~v~~l~~~~~l----~~~~~~~~~~-~i~sl~~~~--~~I~vgD~~~sv~~ 153 (321)
T PF03178_consen 82 IHSTEVKGPVTAICSFNGRLVVAV-GNKLYVYDLDNSKTL----LKKAFYDSPF-YITSLSVFK--NYILVGDAMKSVSL 153 (321)
T ss_dssp EEEEEESS-EEEEEEETTEEEEEE-TTEEEEEEEETTSSE----EEEEEE-BSS-SEEEEEEET--TEEEEEESSSSEEE
T ss_pred EEEEeecCcceEhhhhCCEEEEee-cCEEEEEEccCcccc----hhhheecceE-EEEEEeccc--cEEEEEEcccCEEE
Confidence 3456889999998888877766 7899999999888 3 2222222222 233333334 68999999888998
Q ss_pred EeCCC-CceEEEEc--CCCCCEEEEEEcCCCCEEEEEeCCCeEEEEEeeC-------C--eEEEEEeccCCCcEEEE---
Q 003579 166 WNIST-KKKLYEFK--GWGSSISSCVSSPALDVVAVGCSDGKIHVHNVRY-------D--EELVTFTHSMRGAVTAL--- 230 (809)
Q Consensus 166 wd~~~-~~~~~~~~--~~~~~I~~l~~sp~~~~la~g~~dg~i~iwd~~~-------~--~~~~~~~~~~~~~V~~l--- 230 (809)
+..+. ++.+..+. .....++++.+-++++.++++..+|.+.++.... + +.......+....|+++
T Consensus 154 ~~~~~~~~~l~~va~d~~~~~v~~~~~l~d~~~~i~~D~~gnl~~l~~~~~~~~~~~~~~~L~~~~~f~lg~~v~~~~~~ 233 (321)
T PF03178_consen 154 LRYDEENNKLILVARDYQPRWVTAAEFLVDEDTIIVGDKDGNLFVLRYNPEIPNSRDGDPKLERISSFHLGDIVNSFRRG 233 (321)
T ss_dssp EEEETTTE-EEEEEEESS-BEEEEEEEE-SSSEEEEEETTSEEEEEEE-SS-SSTTTTTTBEEEEEEEE-SS-EEEEEE-
T ss_pred EEEEccCCEEEEEEecCCCccEEEEEEecCCcEEEEEcCCCeEEEEEECCCCcccccccccceeEEEEECCCccceEEEE
Confidence 85543 33233332 2356689999987778999999999999998863 2 22222333335678888
Q ss_pred EEec--CCC-----CEEEEEcCCCcEEEE
Q 003579 231 AFSS--DGQ-----PLLASGASSGVISIW 252 (809)
Q Consensus 231 ~fs~--dg~-----~~lasg~~dg~I~iw 252 (809)
++.| .+. +.++.++.+|.|...
T Consensus 234 ~l~~~~~~~~~~~~~~i~~~T~~G~Ig~l 262 (321)
T PF03178_consen 234 SLIPRSGSSESPNRPQILYGTVDGSIGVL 262 (321)
T ss_dssp -SS--SSSS-TTEEEEEEEEETTS-EEEE
T ss_pred EeeecCCCCcccccceEEEEecCCEEEEE
Confidence 6555 222 136777788888743
No 350
>PF08596 Lgl_C: Lethal giant larvae(Lgl) like, C-terminal; InterPro: IPR013905 The Lethal giant larvae (Lgl) tumour suppressor protein is conserved from yeast to mammals. The Lgl protein functions in cell polarity, at least in part, by regulating SNARE-mediated membrane delivery events at the cell surface []. The N-terminal half of Lgl members contains WD40 repeats (see IPR001680 from INTERPRO), while the C-terminal half appears specific to the protein []. ; PDB: 2OAJ_A.
Probab=98.06 E-value=0.0014 Score=69.37 Aligned_cols=242 Identities=11% Similarity=0.138 Sum_probs=130.6
Q ss_pred ceEEEEEecCCCEEEEEcCCCcEEEEEeeCCCCCc---------------------------------------eeEEec
Q 003579 270 AIISLHFFANEPVLMSASADNSIKMWIFDTTDGDP---------------------------------------RLLRFR 310 (809)
Q Consensus 270 ~V~~l~~~~~~~~l~s~s~d~~i~vw~~~~~~~~~---------------------------------------~~~~~~ 310 (809)
.|+.+.|.++..-|+.+...|.|.+|.+....... ......
T Consensus 3 ~v~~vs~a~~t~Elav~~~~GeVv~~k~~~n~~~~~~~~~~~~~~~~~~~~~~~~~~~l~di~~r~~~~~~~gf~P~~l~ 82 (395)
T PF08596_consen 3 SVTHVSFAPETLELAVGLESGEVVLFKFGKNQNYGNREQPPDLDYNFRRFSLNNSPGKLTDISDRAPPSLKEGFLPLTLL 82 (395)
T ss_dssp -EEEEEEETTTTEEEEEETTS-EEEEEEEE------------------S--GGGSS-SEEE-GGG--TT-SEEEEEEEEE
T ss_pred eEEEEEecCCCceEEEEccCCcEEEEEcccCCCCCccCCCcccCcccccccccCCCcceEEehhhCCcccccccCchhhe
Confidence 47889999998899999999999999775542111 001111
Q ss_pred cCCCCCCeeEEEecCCCEEEEEECCCCEEEEEeeecccceecchhhHHHHHhhccchhhhhccCceeEEeeccccccccc
Q 003579 311 SGHSAPPLCIRFYANGRHILSAGQDRAFRLFSVIQDQQSRELSQRHVAKRARKLKMKEEELKLKPVIAFDCAEIRERDWC 390 (809)
Q Consensus 311 ~~h~~~v~~i~~~~~~~~l~s~~~dg~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~ 390 (809)
....++|++++.+.-| +++.|..+|.+.+.|++.+..+..-....
T Consensus 83 ~~~~g~vtal~~S~iG-Fvaigy~~G~l~viD~RGPavI~~~~i~~---------------------------------- 127 (395)
T PF08596_consen 83 DAKQGPVTALKNSDIG-FVAIGYESGSLVVIDLRGPAVIYNENIRE---------------------------------- 127 (395)
T ss_dssp ---S-SEEEEEE-BTS-EEEEEETTSEEEEEETTTTEEEEEEEGGG----------------------------------
T ss_pred eccCCcEeEEecCCCc-EEEEEecCCcEEEEECCCCeEEeeccccc----------------------------------
Confidence 2336788999987555 99999999999999997665444321111
Q ss_pred eeEEeecCCceEEEEEeeeeeecceeeecCCCCCCCeEEEEEc-----CCC---CEEEEEeCCCcEEEEECCC---Ccee
Q 003579 391 NVVTCHMDTAQAYVWRLQNFVLGEHILRPCPENPTAVKACTIS-----ACG---NFAVLGTAGGWIERFNLQS---GISR 459 (809)
Q Consensus 391 ~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~v~~v~~s-----~~g---~~l~~g~~~g~i~i~~~~~---~~~~ 459 (809)
+ .........++++.|+ .|+ -.+++|+..|.+.+|.+.- +...
T Consensus 128 ------------------------~--~~~~~~~~~vt~ieF~vm~~~~D~ySSi~L~vGTn~G~v~~fkIlp~~~g~f~ 181 (395)
T PF08596_consen 128 ------------------------S--FLSKSSSSYVTSIEFSVMTLGGDGYSSICLLVGTNSGNVLTFKILPSSNGRFS 181 (395)
T ss_dssp ----------------------------T-SS----EEEEEEEEEE-TTSSSEEEEEEEEETTSEEEEEEEEE-GGG-EE
T ss_pred ------------------------c--ccccccccCeeEEEEEEEecCCCcccceEEEEEeCCCCEEEEEEecCCCCceE
Confidence 0 0000111344444443 223 4788999999999998752 2222
Q ss_pred eeeeCcccccccCccccEEEEE-EcCCC--------------------CEEEEEeCcCeEEEEECCCCceeeeeecC-CC
Q 003579 460 GSYLDMSERSNYAHNGEVVGVA-CDSTN--------------------TLMISAGYHGDIKVWDFKGRDLKSRWEVG-CS 517 (809)
Q Consensus 460 ~~~~~~~~~~~~~h~~~v~~l~-~~~~~--------------------~~l~s~~~dg~i~iwd~~~~~~~~~~~~~-~~ 517 (809)
..+... ...+.+.|..+. ++.+. .-++....+..++++...+.+..+..... ..
T Consensus 182 v~~~~~----~~~~~~~i~~I~~i~~~~G~~a~At~~~~~~l~~g~~i~g~vVvvSe~~irv~~~~~~k~~~K~~~~~~~ 257 (395)
T PF08596_consen 182 VQFAGA----TTNHDSPILSIIPINADTGESALATISAMQGLSKGISIPGYVVVVSESDIRVFKPPKSKGAHKSFDDPFL 257 (395)
T ss_dssp EEEEEE----E--SS----EEEEEETTT--B-B-BHHHHHGGGGT----EEEEEE-SSEEEEE-TT---EEEEE-SS-EE
T ss_pred EEEeec----cccCCCceEEEEEEECCCCCcccCchhHhhccccCCCcCcEEEEEcccceEEEeCCCCcccceeeccccc
Confidence 222211 024555655555 32210 12344445688999999888776655522 22
Q ss_pred eEEEEE-----eeCCCEEEEEeCCCeEEEEEcCCCeEEEEEecCC----CCeeeEEECCCCCEEEEEe
Q 003579 518 LVKIVY-----HRVNGLLATVADDLVIRLFDVVALRMVRKFEGHT----DRITDFCFSEDGKWLLSSG 576 (809)
Q Consensus 518 i~~~~~-----s~~~~~la~~~~d~~I~v~d~~~~~~~~~~~~h~----~~I~~l~fspdg~~l~s~s 576 (809)
...+++ ...+..|++-..+|.|++|.+...+.+..+.-+. ..+....++++|..++-.+
T Consensus 258 ~~~~~vv~~~~~~~~~~Lv~l~~~G~i~i~SLP~Lkei~~~~l~~~~d~~~~~~ssis~~Gdi~~~~g 325 (395)
T PF08596_consen 258 CSSASVVPTISRNGGYCLVCLFNNGSIRIYSLPSLKEIKSVSLPPPLDSRRLSSSSISRNGDIFYWTG 325 (395)
T ss_dssp EEEEEEEEEE-EEEEEEEEEEETTSEEEEEETTT--EEEEEE-SS---HHHHTT-EE-TTS-EEEE-S
T ss_pred cceEEEEeecccCCceEEEEEECCCcEEEEECCCchHhhcccCCCccccccccccEECCCCCEEEEeC
Confidence 223344 2356788888999999999999999888877542 2355667777777555444
No 351
>PF04841 Vps16_N: Vps16, N-terminal region; InterPro: IPR006926 This protein forms part of the Class C vacuolar protein sorting (Vps) complex. Vps16 is essential for vacuolar protein sorting, which is essential for viability in plants, but not yeast []. The Class C Vps complex is required for SNARE-mediated membrane fusion at the lysosome-like yeast vacuole. It is thought to play essential roles in membrane docking and fusion at the Golgi-to-endosome and endosome-to-vacuole stages of transport []. The role of VPS16 in this complex is not known.; GO: 0006886 intracellular protein transport, 0005737 cytoplasm
Probab=98.05 E-value=0.0055 Score=65.86 Aligned_cols=109 Identities=11% Similarity=0.109 Sum_probs=63.1
Q ss_pred CCeEEEEEcCCCCEEEEEeCCCcEEEEECCCCceeeeeeCcccccccCccccEEEEEEcCCCCEEEEEeCcCeEEEEECC
Q 003579 425 TAVKACTISACGNFAVLGTAGGWIERFNLQSGISRGSYLDMSERSNYAHNGEVVGVACDSTNTLMISAGYHGDIKVWDFK 504 (809)
Q Consensus 425 ~~v~~v~~s~~g~~l~~g~~~g~i~i~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~l~s~~~dg~i~iwd~~ 504 (809)
+++..+++||+|++++.-+.+|.+.+.+..-.+....+.. .-......++|..+...++.- ...|.+..-.
T Consensus 217 ~~i~~iavSpng~~iAl~t~~g~l~v~ssDf~~~~~e~~~-------~~~~~p~~~~WCG~dav~l~~--~~~l~lvg~~ 287 (410)
T PF04841_consen 217 GPIIKIAVSPNGKFIALFTDSGNLWVVSSDFSEKLCEFDT-------DSKSPPKQMAWCGNDAVVLSW--EDELLLVGPD 287 (410)
T ss_pred CCeEEEEECCCCCEEEEEECCCCEEEEECcccceeEEeec-------CcCCCCcEEEEECCCcEEEEe--CCEEEEECCC
Confidence 6899999999999999999999999987665555544431 223344566665443222221 2233333211
Q ss_pred CCceeeeeecCCCeEEEEEeeCCCEEEEEeCCCeEEEEEcCCCeEEEEEecC
Q 003579 505 GRDLKSRWEVGCSLVKIVYHRVNGLLATVADDLVIRLFDVVALRMVRKFEGH 556 (809)
Q Consensus 505 ~~~~~~~~~~~~~i~~~~~s~~~~~la~~~~d~~I~v~d~~~~~~~~~~~~h 556 (809)
. ..+.|.-++..++..--|| +||+.-...+.+++....
T Consensus 288 ~-------------~~~~~~~~~~~~l~~E~DG-~riit~~~~~~l~~Vp~~ 325 (410)
T PF04841_consen 288 G-------------DSISFWYDGPVILVSEIDG-VRIITSTSHEFLQRVPDS 325 (410)
T ss_pred C-------------CceEEeccCceEEeccCCc-eEEEeCCceEEEEECCHH
Confidence 1 1123333444444444455 777776666666665433
No 352
>PF04053 Coatomer_WDAD: Coatomer WD associated region ; InterPro: IPR006692 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the WD-associated region found in coatomer subunits alpha, beta and beta' subunits. The alpha-subunit (RET1P) of the coatomer complex in Saccharomyces cerevisiae (Baker's yeast), participates in membrane transport between the endoplasmic reticulum and Golgi apparatus. The protein contains six WD-40 repeat motifs in its N-terminal region []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006886 intracellular protein transport, 0016192 vesicle-mediated transport, 0030117 membrane coat; PDB: 3MKQ_B.
Probab=98.03 E-value=0.00018 Score=76.96 Aligned_cols=169 Identities=17% Similarity=0.207 Sum_probs=99.0
Q ss_pred CCeEEEEEcCCCCEEEEEeCCCcEEEEECCCCceeeeeeCcccccccCccccEEEEEEcCCCCEEEEEeCcCeEEEEECC
Q 003579 425 TAVKACTISACGNFAVLGTAGGWIERFNLQSGISRGSYLDMSERSNYAHNGEVVGVACDSTNTLMISAGYHGDIKVWDFK 504 (809)
Q Consensus 425 ~~v~~v~~s~~g~~l~~g~~~g~i~i~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~l~s~~~dg~i~iwd~~ 504 (809)
.....+.++|+|+++++ +.+|.-.+|........ ..+.-...+|.+.++ +|+-...+.|.++.--
T Consensus 33 ~~p~~ls~npngr~v~V-~g~geY~iyt~~~~r~k-------------~~G~g~~~vw~~~n~-yAv~~~~~~I~I~kn~ 97 (443)
T PF04053_consen 33 IYPQSLSHNPNGRFVLV-CGDGEYEIYTALAWRNK-------------AFGSGLSFVWSSRNR-YAVLESSSTIKIYKNF 97 (443)
T ss_dssp S--SEEEE-TTSSEEEE-EETTEEEEEETTTTEEE-------------EEEE-SEEEE-TSSE-EEEE-TTS-EEEEETT
T ss_pred cCCeeEEECCCCCEEEE-EcCCEEEEEEccCCccc-------------ccCceeEEEEecCcc-EEEEECCCeEEEEEcC
Confidence 45788999999999999 67788888884433322 224456678888555 6666668889996333
Q ss_pred CCceeeeeecCCCeEEEEEeeCCCEEEEEeCCCeEEEEEcCCCeEEEEEecCCCCeeeEEECCCCCEEEEEeCCCeEEEE
Q 003579 505 GRDLKSRWEVGCSLVKIVYHRVNGLLATVADDLVIRLFDVVALRMVRKFEGHTDRITDFCFSEDGKWLLSSGMDGSLRIW 584 (809)
Q Consensus 505 ~~~~~~~~~~~~~i~~~~~s~~~~~la~~~~d~~I~v~d~~~~~~~~~~~~h~~~I~~l~fspdg~~l~s~s~D~~I~vw 584 (809)
+.+....+.....+..+.. |.+|+..+.+ .|.+||.++++.++++... +|..+.||++|.+++-.+.+ .+.|+
T Consensus 98 ~~~~~k~i~~~~~~~~If~---G~LL~~~~~~-~i~~yDw~~~~~i~~i~v~--~vk~V~Ws~~g~~val~t~~-~i~il 170 (443)
T PF04053_consen 98 KNEVVKSIKLPFSVEKIFG---GNLLGVKSSD-FICFYDWETGKLIRRIDVS--AVKYVIWSDDGELVALVTKD-SIYIL 170 (443)
T ss_dssp EE-TT-----SS-EEEEE----SSSEEEEETT-EEEEE-TTT--EEEEESS---E-EEEEE-TTSSEEEEE-S--SEEEE
T ss_pred ccccceEEcCCcccceEEc---CcEEEEECCC-CEEEEEhhHcceeeEEecC--CCcEEEEECCCCEEEEEeCC-eEEEE
Confidence 3333344555544555544 7877777655 8999999999999999743 48999999999999988865 57887
Q ss_pred EcCCc-----------cEEEEeee-CcceEEEEEcCCCCeEEEE
Q 003579 585 DVILA-----------RQIDAIHV-DVSITALSLSPNMDVLATA 616 (809)
Q Consensus 585 d~~~~-----------~~i~~~~~-~~~v~~l~~spdg~~lat~ 616 (809)
+.... ..+..+.. ...|.+.+|..| -++.|.
T Consensus 171 ~~~~~~~~~~~~~g~e~~f~~~~E~~~~IkSg~W~~d-~fiYtT 213 (443)
T PF04053_consen 171 KYNLEAVAAIPEEGVEDAFELIHEISERIKSGCWVED-CFIYTT 213 (443)
T ss_dssp EE-HHHHHHBTTTB-GGGEEEEEEE-S--SEEEEETT-EEEEE-
T ss_pred EecchhcccccccCchhceEEEEEecceeEEEEEEcC-EEEEEc
Confidence 76543 13333333 667899999766 444443
No 353
>PF06977 SdiA-regulated: SdiA-regulated; InterPro: IPR009722 This entry represents a conserved region approximately 100 residues long within a number of hypothetical bacterial proteins that may be regulated by SdiA, a member of the LuxR family of transcriptional regulators []. Some proteins contain the IPR001258 from INTERPRO repeat.; PDB: 3QQZ_A.
Probab=98.01 E-value=0.0032 Score=61.72 Aligned_cols=185 Identities=11% Similarity=0.114 Sum_probs=115.9
Q ss_pred CCCCeEEEEEcCCC-CEEEEEeCCCcEEEEECCCCceeeeeeCcccccccCccccEEEEEEcCCCCEEEEEeCcCeEEEE
Q 003579 423 NPTAVKACTISACG-NFAVLGTAGGWIERFNLQSGISRGSYLDMSERSNYAHNGEVVGVACDSTNTLMISAGYHGDIKVW 501 (809)
Q Consensus 423 ~~~~v~~v~~s~~g-~~l~~g~~~g~i~i~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~l~s~~~dg~i~iw 501 (809)
-...+..+++.|+. .++++....+.|..++.+ |+.+..+.- .-.+..-++++..++.++++.-.++.+.++
T Consensus 20 ~~~e~SGLTy~pd~~tLfaV~d~~~~i~els~~-G~vlr~i~l-------~g~~D~EgI~y~g~~~~vl~~Er~~~L~~~ 91 (248)
T PF06977_consen 20 ILDELSGLTYNPDTGTLFAVQDEPGEIYELSLD-GKVLRRIPL-------DGFGDYEGITYLGNGRYVLSEERDQRLYIF 91 (248)
T ss_dssp --S-EEEEEEETTTTEEEEEETTTTEEEEEETT---EEEEEE--------SS-SSEEEEEE-STTEEEEEETTTTEEEEE
T ss_pred ccCCccccEEcCCCCeEEEEECCCCEEEEEcCC-CCEEEEEeC-------CCCCCceeEEEECCCEEEEEEcCCCcEEEE
Confidence 33569999999975 566777888999999975 667666652 234678899999888888877778999999
Q ss_pred ECCCCc------eeeeee------cCCCeEEEEEeeCCCEEEEEeCCCeEEEEEcCC---CeEEE--EEe------cCCC
Q 003579 502 DFKGRD------LKSRWE------VGCSLVKIVYHRVNGLLATVADDLVIRLFDVVA---LRMVR--KFE------GHTD 558 (809)
Q Consensus 502 d~~~~~------~~~~~~------~~~~i~~~~~s~~~~~la~~~~d~~I~v~d~~~---~~~~~--~~~------~h~~ 558 (809)
++.... ....+. ....+-.++|.+.++.|.++.+..-..+|.+.. ...+. ... ....
T Consensus 92 ~~~~~~~~~~~~~~~~~~l~~~~~~N~G~EGla~D~~~~~L~v~kE~~P~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 171 (248)
T PF06977_consen 92 TIDDDTTSLDRADVQKISLGFPNKGNKGFEGLAYDPKTNRLFVAKERKPKRLYEVNGFPGGFDLFVSDDQDLDDDKLFVR 171 (248)
T ss_dssp EE----TT--EEEEEEEE---S---SS--EEEEEETTTTEEEEEEESSSEEEEEEESTT-SS--EEEE-HHHH-HT--SS
T ss_pred EEeccccccchhhceEEecccccCCCcceEEEEEcCCCCEEEEEeCCCChhhEEEccccCccceeeccccccccccceec
Confidence 884321 112222 225688999999988888887777677776653 21111 111 1345
Q ss_pred CeeeEEECCC-CCEEEEEeCCCeEEEEEcCCccEEEEeeeCc----------ceEEEEEcCCCCeEEEE
Q 003579 559 RITDFCFSED-GKWLLSSGMDGSLRIWDVILARQIDAIHVDV----------SITALSLSPNMDVLATA 616 (809)
Q Consensus 559 ~I~~l~fspd-g~~l~s~s~D~~I~vwd~~~~~~i~~~~~~~----------~v~~l~~spdg~~lat~ 616 (809)
.+.+++++|. |.+++-+..+..|.++| .+|+.+..+.... ..-.|+|.++|+..++.
T Consensus 172 d~S~l~~~p~t~~lliLS~es~~l~~~d-~~G~~~~~~~L~~g~~gl~~~~~QpEGIa~d~~G~LYIvs 239 (248)
T PF06977_consen 172 DLSGLSYDPRTGHLLILSDESRLLLELD-RQGRVVSSLSLDRGFHGLSKDIPQPEGIAFDPDGNLYIVS 239 (248)
T ss_dssp ---EEEEETTTTEEEEEETTTTEEEEE--TT--EEEEEE-STTGGG-SS---SEEEEEE-TT--EEEEE
T ss_pred cccceEEcCCCCeEEEEECCCCeEEEEC-CCCCEEEEEEeCCcccCcccccCCccEEEECCCCCEEEEc
Confidence 5788999985 56777788889999999 7799888776543 38899999999766554
No 354
>PF00780 CNH: CNH domain; InterPro: IPR001180 Based on sequence similarities a domain of homology has been identified in the following proteins []: Citron and Citron kinase. These two proteins interact with the GTP-bound forms of the small GTPases Rho and Rac but not with Cdc42. Myotonic dystrophy kinase-related Cdc42-binding kinase (MRCKalpha). This serine/threonine kinase interacts with the GTP-bound form of the small GTPase Cdc42 and to a lesser extent with that of Rac. NCK Interacting Kinase (NIK), a serine/threonine protein kinase. ROM-1 and ROM-2, from yeast. These proteins are GDP/GTP exchange proteins (GEPs) for the small GTP binding protein Rho1. This domain, called the citron homology domain, is often found after cysteine rich and pleckstrin homology (PH) domains at the C-terminal end of the proteins []. It acts as a regulatory domain and could be involved in macromolecular interactions [, ].; GO: 0005083 small GTPase regulator activity
Probab=97.99 E-value=0.0089 Score=61.01 Aligned_cols=244 Identities=14% Similarity=0.127 Sum_probs=138.1
Q ss_pred CCCCEEEEEcCCCcEEEEECCCceeeeeeecccccceEEEEEecCCCEEEEEcCCCcEEEEEeeCCCCCceeE--E----
Q 003579 235 DGQPLLASGASSGVISIWNLEKRRLQSVIREAHDNAIISLHFFANEPVLMSASADNSIKMWIFDTTDGDPRLL--R---- 308 (809)
Q Consensus 235 dg~~~lasg~~dg~I~iwdl~~~~~~~~~~~~h~~~V~~l~~~~~~~~l~s~s~d~~i~vw~~~~~~~~~~~~--~---- 308 (809)
.++ .|+.|+.+| |.++++........+. +...|..+...++-+.|++-+ |+.+.+++++.-......- .
T Consensus 6 ~~~-~L~vGt~~G-l~~~~~~~~~~~~~i~--~~~~I~ql~vl~~~~~llvLs-d~~l~~~~L~~l~~~~~~~~~~~~~~ 80 (275)
T PF00780_consen 6 WGD-RLLVGTEDG-LYVYDLSDPSKPTRIL--KLSSITQLSVLPELNLLLVLS-DGQLYVYDLDSLEPVSTSAPLAFPKS 80 (275)
T ss_pred CCC-EEEEEECCC-EEEEEecCCccceeEe--ecceEEEEEEecccCEEEEEc-CCccEEEEchhhcccccccccccccc
Confidence 344 788898888 9999983333222222 334499999999888777775 5999999887653322110 0
Q ss_pred ----eccCCCCCCeeEE--EecCCCEEEEEECCCCEEEEEeeecccceecchhhHHHHHhhccchhhhhccCceeEEeec
Q 003579 309 ----FRSGHSAPPLCIR--FYANGRHILSAGQDRAFRLFSVIQDQQSRELSQRHVAKRARKLKMKEEELKLKPVIAFDCA 382 (809)
Q Consensus 309 ----~~~~h~~~v~~i~--~~~~~~~l~s~~~dg~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~ 382 (809)
........+...+ -...+...+.....+.|.+|..........
T Consensus 81 ~~~~~~~~~~~~v~~f~~~~~~~~~~~L~va~kk~i~i~~~~~~~~~f~------------------------------- 129 (275)
T PF00780_consen 81 RSLPTKLPETKGVSFFAVNGGHEGSRRLCVAVKKKILIYEWNDPRNSFS------------------------------- 129 (275)
T ss_pred ccccccccccCCeeEEeeccccccceEEEEEECCEEEEEEEECCccccc-------------------------------
Confidence 0111222344433 112333344444455777777654311110
Q ss_pred cccccccceeEEeecCCceEEEEEeeeeeecceeeecCCCCCCCeEEEEEcCCCCEEEEEeCCCcEEEEECCCCceeeee
Q 003579 383 EIRERDWCNVVTCHMDTAQAYVWRLQNFVLGEHILRPCPENPTAVKACTISACGNFAVLGTAGGWIERFNLQSGISRGSY 462 (809)
Q Consensus 383 ~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~v~~v~~s~~g~~l~~g~~~g~i~i~~~~~~~~~~~~ 462 (809)
....+. .-+..+.+++|. ++.+++|..++ ..+.|+.++.....+
T Consensus 130 ---------------------------~~~ke~------~lp~~~~~i~~~--~~~i~v~~~~~-f~~idl~~~~~~~l~ 173 (275)
T PF00780_consen 130 ---------------------------KLLKEI------SLPDPPSSIAFL--GNKICVGTSKG-FYLIDLNTGSPSELL 173 (275)
T ss_pred ---------------------------ceeEEE------EcCCCcEEEEEe--CCEEEEEeCCc-eEEEecCCCCceEEe
Confidence 000000 112677788887 78888888655 888999977765544
Q ss_pred eCcccc----cccCccccEEEEEEcCCCCEEEEEeCcCeEEEEECCCCcee-eeeecCCCeEEEEEeeCCCEEEEEeCCC
Q 003579 463 LDMSER----SNYAHNGEVVGVACDSTNTLMISAGYHGDIKVWDFKGRDLK-SRWEVGCSLVKIVYHRVNGLLATVADDL 537 (809)
Q Consensus 463 ~~~~~~----~~~~h~~~v~~l~~~~~~~~l~s~~~dg~i~iwd~~~~~~~-~~~~~~~~i~~~~~s~~~~~la~~~~d~ 537 (809)
...... .......++..+... ++.+|++. |..-.+.|....... ..+.....+.++++. ..+|++.+. +
T Consensus 174 ~~~~~~~~~~~~~~~~~~~~~~~~~-~~e~Ll~~--~~~g~fv~~~G~~~r~~~i~W~~~p~~~~~~--~pyli~~~~-~ 247 (275)
T PF00780_consen 174 DPSDSSSSFKSRNSSSKPLGIFQLS-DNEFLLCY--DNIGVFVNKNGEPSRKSTIQWSSAPQSVAYS--SPYLIAFSS-N 247 (275)
T ss_pred CccCCcchhhhcccCCCceEEEEeC-CceEEEEe--cceEEEEcCCCCcCcccEEEcCCchhEEEEE--CCEEEEECC-C
Confidence 211100 000112233333433 45666543 334444554433222 466667777888885 457766655 5
Q ss_pred eEEEEEcCCCeEEEEEecC
Q 003579 538 VIRLFDVVALRMVRKFEGH 556 (809)
Q Consensus 538 ~I~v~d~~~~~~~~~~~~h 556 (809)
.|.||++.++++++++.+.
T Consensus 248 ~iEV~~~~~~~lvQ~i~~~ 266 (275)
T PF00780_consen 248 SIEVRSLETGELVQTIPLP 266 (275)
T ss_pred EEEEEECcCCcEEEEEECC
Confidence 5999999999999888754
No 355
>COG0823 TolB Periplasmic component of the Tol biopolymer transport system [Intracellular trafficking and secretion]
Probab=97.98 E-value=0.00021 Score=76.23 Aligned_cols=186 Identities=15% Similarity=0.111 Sum_probs=126.9
Q ss_pred CCeEEEEEcCCCCEEEEE---eCC-CcEEEEECCCCceeeeeeCcccccccCccccEEEEEEcCCCCEEEEEe-CcCe--
Q 003579 425 TAVKACTISACGNFAVLG---TAG-GWIERFNLQSGISRGSYLDMSERSNYAHNGEVVGVACDSTNTLMISAG-YHGD-- 497 (809)
Q Consensus 425 ~~v~~v~~s~~g~~l~~g---~~~-g~i~i~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~l~s~~-~dg~-- 497 (809)
..+..-.|+|++..++.- ... ..+.++++.++....... ..+.-...+|+|||+.|+-+. .||.
T Consensus 193 ~~~~~p~ws~~~~~~~y~~f~~~~~~~i~~~~l~~g~~~~i~~---------~~g~~~~P~fspDG~~l~f~~~rdg~~~ 263 (425)
T COG0823 193 SLILTPAWSPDGKKLAYVSFELGGCPRIYYLDLNTGKRPVILN---------FNGNNGAPAFSPDGSKLAFSSSRDGSPD 263 (425)
T ss_pred cceeccccCcCCCceEEEEEecCCCceEEEEeccCCccceeec---------cCCccCCccCCCCCCEEEEEECCCCCcc
Confidence 456667888988776543 222 468999999887766553 334445678999998777554 5665
Q ss_pred EEEEECCCCceeeeeecCCCeEEEEEeeCCCEEEEEeCCC---eEEEEEcCCCeEEEEEecCCCCeeeEEECCCCCEEEE
Q 003579 498 IKVWDFKGRDLKSRWEVGCSLVKIVYHRVNGLLATVADDL---VIRLFDVVALRMVRKFEGHTDRITDFCFSEDGKWLLS 574 (809)
Q Consensus 498 i~iwd~~~~~~~~~~~~~~~i~~~~~s~~~~~la~~~~d~---~I~v~d~~~~~~~~~~~~h~~~I~~l~fspdg~~l~s 574 (809)
|.+.|+.++...+.....+.-+.-.|+|||+.++..++.+ .|.++|.+.....+ +.-..+.-..-.|||||++|+.
T Consensus 264 iy~~dl~~~~~~~Lt~~~gi~~~Ps~spdG~~ivf~Sdr~G~p~I~~~~~~g~~~~r-iT~~~~~~~~p~~SpdG~~i~~ 342 (425)
T COG0823 264 IYLMDLDGKNLPRLTNGFGINTSPSWSPDGSKIVFTSDRGGRPQIYLYDLEGSQVTR-LTFSGGGNSNPVWSPDGDKIVF 342 (425)
T ss_pred EEEEcCCCCcceecccCCccccCccCCCCCCEEEEEeCCCCCcceEEECCCCCceeE-eeccCCCCcCccCCCCCCEEEE
Confidence 6666887777544333334445778999999998887643 67777888766533 3323322237789999999997
Q ss_pred EeC-CCe--EEEEEcCCccEEEEeeeCcceEEEEEcCCCCeEEEEEeCC
Q 003579 575 SGM-DGS--LRIWDVILARQIDAIHVDVSITALSLSPNMDVLATAHVDQ 620 (809)
Q Consensus 575 ~s~-D~~--I~vwd~~~~~~i~~~~~~~~v~~l~~spdg~~lat~~~d~ 620 (809)
.+. +|. |.+.|+.++..++.+..........|.|+|..+...+...
T Consensus 343 ~~~~~g~~~i~~~~~~~~~~~~~lt~~~~~e~ps~~~ng~~i~~~s~~~ 391 (425)
T COG0823 343 ESSSGGQWDIDKNDLASGGKIRILTSTYLNESPSWAPNGRMIMFSSGQG 391 (425)
T ss_pred EeccCCceeeEEeccCCCCcEEEccccccCCCCCcCCCCceEEEeccCC
Confidence 764 344 7777887776666666555567788999998888776554
No 356
>PF03178 CPSF_A: CPSF A subunit region; InterPro: IPR004871 This family includes a region that lies towards the C terminus of the cleavage and polyadenylation specificity factor (CPSF) A (160 kDa) subunit. CPSF is involved in mRNA polyadenylation and binds the AAUAAA conserved sequence in pre-mRNA. CPSF has also been found to be necessary for splicing of single-intron pre-mRNAs []. The function of the aligned region is unknown but may be involved in RNA/DNA binding.; GO: 0003676 nucleic acid binding, 0005634 nucleus; PDB: 2B5M_A 4A0K_C 4A0B_C 3I7L_A 3I8E_A 4A09_A 4A0A_A 3EI4_C 2B5L_A 3I7O_A ....
Probab=97.97 E-value=0.002 Score=67.39 Aligned_cols=178 Identities=15% Similarity=0.158 Sum_probs=113.0
Q ss_pred CCEEEEEeC---------C-CcEEEEECCCC-----ceeeeeeCcccccccCccccEEEEEEcCCCCEEEEEeCcCeEEE
Q 003579 436 GNFAVLGTA---------G-GWIERFNLQSG-----ISRGSYLDMSERSNYAHNGEVVGVACDSTNTLMISAGYHGDIKV 500 (809)
Q Consensus 436 g~~l~~g~~---------~-g~i~i~~~~~~-----~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~l~s~~~dg~i~i 500 (809)
..++++|+. . |.|.+|++... +...... ....++|++++-- ++. ++.+. ++.|.+
T Consensus 42 ~~~ivVGT~~~~~~~~~~~~Gri~v~~i~~~~~~~~~l~~i~~-------~~~~g~V~ai~~~-~~~-lv~~~-g~~l~v 111 (321)
T PF03178_consen 42 KEYIVVGTAFNYGEDPEPSSGRILVFEISESPENNFKLKLIHS-------TEVKGPVTAICSF-NGR-LVVAV-GNKLYV 111 (321)
T ss_dssp SEEEEEEEEE--TTSSS-S-EEEEEEEECSS-----EEEEEEE-------EEESS-EEEEEEE-TTE-EEEEE-TTEEEE
T ss_pred cCEEEEEecccccccccccCcEEEEEEEEcccccceEEEEEEE-------EeecCcceEhhhh-CCE-EEEee-cCEEEE
Confidence 578888865 2 99999999984 2222111 2557889998877 344 44333 489999
Q ss_pred EECCCCc-eeeeeecCCCeEEEEEeeCCCEEEEEeCCCeEEEEEcCC-CeEEEEEec--CCCCeeeEEECCCCCEEEEEe
Q 003579 501 WDFKGRD-LKSRWEVGCSLVKIVYHRVNGLLATVADDLVIRLFDVVA-LRMVRKFEG--HTDRITDFCFSEDGKWLLSSG 576 (809)
Q Consensus 501 wd~~~~~-~~~~~~~~~~i~~~~~s~~~~~la~~~~d~~I~v~d~~~-~~~~~~~~~--h~~~I~~l~fspdg~~l~s~s 576 (809)
|++...+ +...-....++........++++++|.....+.++..+. .+.+..+.. ....++++.|-+|++.++.+.
T Consensus 112 ~~l~~~~~l~~~~~~~~~~~i~sl~~~~~~I~vgD~~~sv~~~~~~~~~~~l~~va~d~~~~~v~~~~~l~d~~~~i~~D 191 (321)
T PF03178_consen 112 YDLDNSKTLLKKAFYDSPFYITSLSVFKNYILVGDAMKSVSLLRYDEENNKLILVARDYQPRWVTAAEFLVDEDTIIVGD 191 (321)
T ss_dssp EEEETTSSEEEEEEE-BSSSEEEEEEETTEEEEEESSSSEEEEEEETTTE-EEEEEEESS-BEEEEEEEE-SSSEEEEEE
T ss_pred EEccCcccchhhheecceEEEEEEeccccEEEEEEcccCEEEEEEEccCCEEEEEEecCCCccEEEEEEecCCcEEEEEc
Confidence 9999888 666555555444455555577999999888888875443 232223222 345588999987777899999
Q ss_pred CCCeEEEEEcCC-------cc----EEEEeeeCcceEEE---EEcCC--CC------eEEEEEeCCCeEE
Q 003579 577 MDGSLRIWDVIL-------AR----QIDAIHVDVSITAL---SLSPN--MD------VLATAHVDQNGVY 624 (809)
Q Consensus 577 ~D~~I~vwd~~~-------~~----~i~~~~~~~~v~~l---~~spd--g~------~lat~~~d~~~i~ 624 (809)
.+|.+.++..+. +. .+..++.+..|+++ ++.|. +. .++.++.+| +|.
T Consensus 192 ~~gnl~~l~~~~~~~~~~~~~~~L~~~~~f~lg~~v~~~~~~~l~~~~~~~~~~~~~~i~~~T~~G-~Ig 260 (321)
T PF03178_consen 192 KDGNLFVLRYNPEIPNSRDGDPKLERISSFHLGDIVNSFRRGSLIPRSGSSESPNRPQILYGTVDG-SIG 260 (321)
T ss_dssp TTSEEEEEEE-SS-SSTTTTTTBEEEEEEEE-SS-EEEEEE--SS--SSSS-TTEEEEEEEEETTS--EE
T ss_pred CCCeEEEEEECCCCcccccccccceeEEEEECCCccceEEEEEeeecCCCCcccccceEEEEecCC-EEE
Confidence 999999998763 22 34556667778888 66662 22 377777787 466
No 357
>PF08553 VID27: VID27 cytoplasmic protein; InterPro: IPR013863 This entry represents fungal and plant proteins and contains many hypothetical proteins. Vid27p is a cytoplasmic protein of unknown function, possibly regulates import of fructose-1,6-bisphosphatase into Vacuolar Import and Degradation (Vid) vesicles and is not essential for proteasome-dependent degradation of fructose-1,6-bisphosphatase (FBPase) [, ].
Probab=97.94 E-value=0.00087 Score=75.68 Aligned_cols=135 Identities=14% Similarity=0.186 Sum_probs=96.1
Q ss_pred CCCeEEEEeCCCCceEEEEcCCCCC-EEEEEEcC-----CCCEEEEEeCCCeEEEEEeeCCe--EEEEEe--ccCCCcEE
Q 003579 159 QEGSLQLWNISTKKKLYEFKGWGSS-ISSCVSSP-----ALDVVAVGCSDGKIHVHNVRYDE--ELVTFT--HSMRGAVT 228 (809)
Q Consensus 159 ~dg~i~lwd~~~~~~~~~~~~~~~~-I~~l~~sp-----~~~~la~g~~dg~i~iwd~~~~~--~~~~~~--~~~~~~V~ 228 (809)
..+.|+-.|++.|+.+..++.|... |..++-.. ...-..+|-.+..+..||.+-.. .+.... -......+
T Consensus 502 ~~~~ly~mDLe~GKVV~eW~~~~~~~v~~~~p~~K~aqlt~e~tflGls~n~lfriDpR~~~~k~v~~~~k~Y~~~~~Fs 581 (794)
T PF08553_consen 502 NPNKLYKMDLERGKVVEEWKVHDDIPVVDIAPDSKFAQLTNEQTFLGLSDNSLFRIDPRLSGNKLVDSQSKQYSSKNNFS 581 (794)
T ss_pred CCCceEEEecCCCcEEEEeecCCCcceeEecccccccccCCCceEEEECCCceEEeccCCCCCceeeccccccccCCCce
Confidence 3467999999999999999987654 66554331 12346777888999999998543 221111 11245688
Q ss_pred EEEEecCCCCEEEEEcCCCcEEEEECCCceeeeeeecccccceEEEEEecCCCEEEEEcCCCcEEEEEe
Q 003579 229 ALAFSSDGQPLLASGASSGVISIWNLEKRRLQSVIREAHDNAIISLHFFANEPVLMSASADNSIKMWIF 297 (809)
Q Consensus 229 ~l~fs~dg~~~lasg~~dg~I~iwdl~~~~~~~~~~~~h~~~V~~l~~~~~~~~l~s~s~d~~i~vw~~ 297 (809)
|++-+.+| .+|+|+.+|.|++||-- ++...+...+-..+|.+|..+.||++++..+. ..+.+++.
T Consensus 582 ~~aTt~~G--~iavgs~~G~IRLyd~~-g~~AKT~lp~lG~pI~~iDvt~DGkwilaTc~-tyLlLi~t 646 (794)
T PF08553_consen 582 CFATTEDG--YIAVGSNKGDIRLYDRL-GKRAKTALPGLGDPIIGIDVTADGKWILATCK-TYLLLIDT 646 (794)
T ss_pred EEEecCCc--eEEEEeCCCcEEeeccc-chhhhhcCCCCCCCeeEEEecCCCcEEEEeec-ceEEEEEE
Confidence 88888888 59999999999999953 43333333377899999999999998877664 55666654
No 358
>PF04841 Vps16_N: Vps16, N-terminal region; InterPro: IPR006926 This protein forms part of the Class C vacuolar protein sorting (Vps) complex. Vps16 is essential for vacuolar protein sorting, which is essential for viability in plants, but not yeast []. The Class C Vps complex is required for SNARE-mediated membrane fusion at the lysosome-like yeast vacuole. It is thought to play essential roles in membrane docking and fusion at the Golgi-to-endosome and endosome-to-vacuole stages of transport []. The role of VPS16 in this complex is not known.; GO: 0006886 intracellular protein transport, 0005737 cytoplasm
Probab=97.91 E-value=0.015 Score=62.53 Aligned_cols=194 Identities=13% Similarity=0.158 Sum_probs=104.5
Q ss_pred EEEEEC-CeeEEEEccccccEEEEEE-eCCEEEEEeCCCcEEEEEcCCCccccceeeeEEcCCccccEE-----EEeCCC
Q 003579 77 IAVVKR-AHQVATWSRHSAKVNLLLL-FGEHILSIDIDGNMFIWAFKGIEENLAPVGHVKLDDKFTPTC-----IMHPDT 149 (809)
Q Consensus 77 i~vw~~-~~~~~~~~~h~~~V~~l~~-~g~~l~s~~~dg~i~vWd~~~~~~~~~~~~~~~~~~~~~~~~-----~~~p~~ 149 (809)
|.+|+. |+.+..+.-..++|.++.| +...|+....||.++++|+.... .......+ ....+..+ .+...|
T Consensus 63 I~iys~sG~ll~~i~w~~~~iv~~~wt~~e~LvvV~~dG~v~vy~~~G~~-~fsl~~~i--~~~~v~e~~i~~~~~~~~G 139 (410)
T PF04841_consen 63 IQIYSSSGKLLSSIPWDSGRIVGMGWTDDEELVVVQSDGTVRVYDLFGEF-QFSLGEEI--EEEKVLECRIFAIWFYKNG 139 (410)
T ss_pred EEEECCCCCEeEEEEECCCCEEEEEECCCCeEEEEEcCCEEEEEeCCCce-eechhhhc--cccCcccccccccccCCCC
Confidence 777864 5666663322389999999 56788899999999999987544 11101111 11111111 112233
Q ss_pred CCCEEEEEeCCCeEEEEeCCCCc-eEEEE---cCCCC------CEEE-EEEcCCCCEEEEEeCCCeEEEEEeeCCeEEEE
Q 003579 150 YLNKVIVGSQEGSLQLWNISTKK-KLYEF---KGWGS------SISS-CVSSPALDVVAVGCSDGKIHVHNVRYDEELVT 218 (809)
Q Consensus 150 ~~~~l~~~~~dg~i~lwd~~~~~-~~~~~---~~~~~------~I~~-l~~sp~~~~la~g~~dg~i~iwd~~~~~~~~~ 218 (809)
+++-..++.+.+.+--... ....+ ..... .... ..++.+....+....++.+.+.+-...+.
T Consensus 140 ----ivvLt~~~~~~~v~n~~~~~~~~~~~~~p~~~~~~~~~~~~~~i~~l~~~~~~~i~~~~g~~i~~i~~~~~~~--- 212 (410)
T PF04841_consen 140 ----IVVLTGNNRFYVVNNIDEPVKLRRLPEIPGLWTKFHWWPSWTVIPLLSSDRVVEILLANGETIYIIDENSFKQ--- 212 (410)
T ss_pred ----EEEECCCCeEEEEeCccccchhhccccCCCcccccccccccccceEeecCcceEEEEecCCEEEEEEcccccc---
Confidence 4444455655555322211 11111 11000 0000 22333433344444444444333221111
Q ss_pred EeccCCCcEEEEEEecCCCCEEEEEcCCCcEEEEECCCceeeeeeecccccceEEEEEecCCCEE
Q 003579 219 FTHSMRGAVTALAFSSDGQPLLASGASSGVISIWNLEKRRLQSVIREAHDNAIISLHFFANEPVL 283 (809)
Q Consensus 219 ~~~~~~~~V~~l~fs~dg~~~lasg~~dg~I~iwdl~~~~~~~~~~~~h~~~V~~l~~~~~~~~l 283 (809)
+. ..+++..|+.||+|+ ++|.-..+|.+.+.+..-.+....+...-......+.|.-+...+
T Consensus 213 i~--~~~~i~~iavSpng~-~iAl~t~~g~l~v~ssDf~~~~~e~~~~~~~~p~~~~WCG~dav~ 274 (410)
T PF04841_consen 213 ID--SDGPIIKIAVSPNGK-FIALFTDSGNLWVVSSDFSEKLCEFDTDSKSPPKQMAWCGNDAVV 274 (410)
T ss_pred cc--CCCCeEEEEECCCCC-EEEEEECCCCEEEEECcccceeEEeecCcCCCCcEEEEECCCcEE
Confidence 11 146899999999999 888888899999998766666666653434566778887654333
No 359
>PF11768 DUF3312: Protein of unknown function (DUF3312); InterPro: IPR024511 This is a eukaryotic family of uncharacterised proteins that contain WD40 repeats.
Probab=97.91 E-value=0.00016 Score=76.40 Aligned_cols=101 Identities=15% Similarity=0.254 Sum_probs=76.3
Q ss_pred EEEEEcCCCccccceeeeEEcCCccccEEEEeCCCCCCEEEEEeCCCeEEEEeCCCCceEEEEcCCCCCEEEEEEcCCCC
Q 003579 115 MFIWAFKGIEENLAPVGHVKLDDKFTPTCIMHPDTYLNKVIVGSQEGSLQLWNISTKKKLYEFKGWGSSISSCVSSPALD 194 (809)
Q Consensus 115 i~vWd~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~l~~~~~dg~i~lwd~~~~~~~~~~~~~~~~I~~l~~sp~~~ 194 (809)
-++|++...+.....+..+... ..+.+|+++|+. .+++.|+.||+|.+||...+... +....-..+.++|+|+|.
T Consensus 238 ~ciYE~~r~klqrvsvtsipL~-s~v~~ca~sp~E--~kLvlGC~DgSiiLyD~~~~~t~--~~ka~~~P~~iaWHp~ga 312 (545)
T PF11768_consen 238 SCIYECSRNKLQRVSVTSIPLP-SQVICCARSPSE--DKLVLGCEDGSIILYDTTRGVTL--LAKAEFIPTLIAWHPDGA 312 (545)
T ss_pred EEEEEeecCceeEEEEEEEecC-CcceEEecCccc--ceEEEEecCCeEEEEEcCCCeee--eeeecccceEEEEcCCCc
Confidence 4567777665544445555443 445788899999 89999999999999998666333 223456688999999999
Q ss_pred EEEEEeCCCeEEEEEeeCCeEEEEEe
Q 003579 195 VVAVGCSDGKIHVHNVRYDEELVTFT 220 (809)
Q Consensus 195 ~la~g~~dg~i~iwd~~~~~~~~~~~ 220 (809)
++++|+..|.+.+||+.-......+.
T Consensus 313 i~~V~s~qGelQ~FD~ALspi~~qLl 338 (545)
T PF11768_consen 313 IFVVGSEQGELQCFDMALSPIKMQLL 338 (545)
T ss_pred EEEEEcCCceEEEEEeecCccceeec
Confidence 99999999999999998655444443
No 360
>COG3391 Uncharacterized conserved protein [Function unknown]
Probab=97.87 E-value=0.038 Score=59.04 Aligned_cols=285 Identities=14% Similarity=0.116 Sum_probs=178.5
Q ss_pred EEEEeCCCCceEEEEcCCCCCEEEEEEcCCCCEEEEEeCC-CeEEEEEeeCCeEEEEEeccCCCcEEEEEEecCCCCEEE
Q 003579 163 LQLWNISTKKKLYEFKGWGSSISSCVSSPALDVVAVGCSD-GKIHVHNVRYDEELVTFTHSMRGAVTALAFSSDGQPLLA 241 (809)
Q Consensus 163 i~lwd~~~~~~~~~~~~~~~~I~~l~~sp~~~~la~g~~d-g~i~iwd~~~~~~~~~~~~~~~~~V~~l~fs~dg~~~la 241 (809)
+.+++..+.+....+..+. ....+...|++..+.+.... ..+...+.. ...+..........-..++.++++....+
T Consensus 13 ~~v~~~~~~~~~~~~~~~~-~~~~v~~~~~g~~~~v~~~~~~~~~~~~~~-~n~~~~~~~~g~~~p~~i~v~~~~~~vyv 90 (381)
T COG3391 13 VSVINTGTNKVTAAISLGR-GPGGVAVNPDGTQVYVANSGSNDVSVIDAT-SNTVTQSLSVGGVYPAGVAVNPAGNKVYV 90 (381)
T ss_pred eEEEeecccEEEEEeecCC-CCceeEEcCccCEEEEEeecCceeeecccc-cceeeeeccCCCccccceeeCCCCCeEEE
Confidence 6666666666555555433 55667888888655554432 245555444 22222211110134567888888886777
Q ss_pred EEcCCCcEEEEECCCceeeeeeecccccceEEEEEecCCCEEEEEcCC-CcEEEEEeeCCCCCceeEEeccCCCCCCeeE
Q 003579 242 SGASSGVISIWNLEKRRLQSVIREAHDNAIISLHFFANEPVLMSASAD-NSIKMWIFDTTDGDPRLLRFRSGHSAPPLCI 320 (809)
Q Consensus 242 sg~~dg~I~iwdl~~~~~~~~~~~~h~~~V~~l~~~~~~~~l~s~s~d-~~i~vw~~~~~~~~~~~~~~~~~h~~~v~~i 320 (809)
....++.|.+.|..+.+.......+. ....+++.++++.+..+... +.-.++.++.... ........-..+ ..+
T Consensus 91 ~~~~~~~v~vid~~~~~~~~~~~vG~--~P~~~~~~~~~~~vYV~n~~~~~~~vsvid~~t~--~~~~~~~vG~~P-~~~ 165 (381)
T COG3391 91 TTGDSNTVSVIDTATNTVLGSIPVGL--GPVGLAVDPDGKYVYVANAGNGNNTVSVIDAATN--KVTATIPVGNTP-TGV 165 (381)
T ss_pred ecCCCCeEEEEcCcccceeeEeeecc--CCceEEECCCCCEEEEEecccCCceEEEEeCCCC--eEEEEEecCCCc-ceE
Confidence 77778999999988888888776444 67889999999877766553 2344444454433 233332222233 899
Q ss_pred EEecCCCEEEEEE-CCCCEEEEEeeecccceecchhhHHHHHhhccchhhhhccCceeEEeeccccccccceeEEeecCC
Q 003579 321 RFYANGRHILSAG-QDRAFRLFSVIQDQQSRELSQRHVAKRARKLKMKEEELKLKPVIAFDCAEIRERDWCNVVTCHMDT 399 (809)
Q Consensus 321 ~~~~~~~~l~s~~-~dg~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~ 399 (809)
++.|+|+.++.+. .++.+.+.+.......+ -...
T Consensus 166 a~~p~g~~vyv~~~~~~~v~vi~~~~~~v~~-~~~~-------------------------------------------- 200 (381)
T COG3391 166 AVDPDGNKVYVTNSDDNTVSVIDTSGNSVVR-GSVG-------------------------------------------- 200 (381)
T ss_pred EECCCCCeEEEEecCCCeEEEEeCCCcceec-cccc--------------------------------------------
Confidence 9999999777665 67888888854332211 0000
Q ss_pred ceEEEEEeeeeeecceeeecCCCCCCCeEEEEEcCCCCEEEEEeCC---CcEEEEECCCCceeeeeeCcccccccCcccc
Q 003579 400 AQAYVWRLQNFVLGEHILRPCPENPTAVKACTISACGNFAVLGTAG---GWIERFNLQSGISRGSYLDMSERSNYAHNGE 476 (809)
Q Consensus 400 ~~~~~w~~~~~~~~~~~~~~~~~~~~~v~~v~~s~~g~~l~~g~~~---g~i~i~~~~~~~~~~~~~~~~~~~~~~h~~~ 476 (809)
...........+.++++|+++.+.... +.+...|..++.....-.. .+.. .
T Consensus 201 -------------------~~~~~~~~P~~i~v~~~g~~~yV~~~~~~~~~v~~id~~~~~v~~~~~~------~~~~-~ 254 (381)
T COG3391 201 -------------------SLVGVGTGPAGIAVDPDGNRVYVANDGSGSNNVLKIDTATGNVTATDLP------VGSG-A 254 (381)
T ss_pred -------------------cccccCCCCceEEECCCCCEEEEEeccCCCceEEEEeCCCceEEEeccc------cccC-C
Confidence 000111455678899999987776555 5899999988877665210 1222 5
Q ss_pred EEEEEEcCCCCEEEEEe-CcCeEEEEECCCCceeeeeecCCC----eEEEEEee
Q 003579 477 VVGVACDSTNTLMISAG-YHGDIKVWDFKGRDLKSRWEVGCS----LVKIVYHR 525 (809)
Q Consensus 477 v~~l~~~~~~~~l~s~~-~dg~i~iwd~~~~~~~~~~~~~~~----i~~~~~s~ 525 (809)
...+.++|+|+.+.+.. ..+.+.+-|..+............ +..+++.+
T Consensus 255 ~~~v~~~p~g~~~yv~~~~~~~V~vid~~~~~v~~~~~~~~~~~~~~~~~~~~~ 308 (381)
T COG3391 255 PRGVAVDPAGKAAYVANSQGGTVSVIDGATDRVVKTGPTGNEALGEPVSIAISP 308 (381)
T ss_pred CCceeECCCCCEEEEEecCCCeEEEEeCCCCceeeeecccccccccceecccee
Confidence 67789999999888874 448899999888887776654432 55555554
No 361
>PF00780 CNH: CNH domain; InterPro: IPR001180 Based on sequence similarities a domain of homology has been identified in the following proteins []: Citron and Citron kinase. These two proteins interact with the GTP-bound forms of the small GTPases Rho and Rac but not with Cdc42. Myotonic dystrophy kinase-related Cdc42-binding kinase (MRCKalpha). This serine/threonine kinase interacts with the GTP-bound form of the small GTPase Cdc42 and to a lesser extent with that of Rac. NCK Interacting Kinase (NIK), a serine/threonine protein kinase. ROM-1 and ROM-2, from yeast. These proteins are GDP/GTP exchange proteins (GEPs) for the small GTP binding protein Rho1. This domain, called the citron homology domain, is often found after cysteine rich and pleckstrin homology (PH) domains at the C-terminal end of the proteins []. It acts as a regulatory domain and could be involved in macromolecular interactions [, ].; GO: 0005083 small GTPase regulator activity
Probab=97.80 E-value=0.026 Score=57.57 Aligned_cols=147 Identities=18% Similarity=0.217 Sum_probs=91.6
Q ss_pred CCCCEEEEEeCCCeEEEEEeeCCeEEEEEeccCCCcEEEEEEecCCCCEEEEEcCCCcEEEEECCCceeeeee-------
Q 003579 191 PALDVVAVGCSDGKIHVHNVRYDEELVTFTHSMRGAVTALAFSSDGQPLLASGASSGVISIWNLEKRRLQSVI------- 263 (809)
Q Consensus 191 p~~~~la~g~~dg~i~iwd~~~~~~~~~~~~~~~~~V~~l~fs~dg~~~lasg~~dg~I~iwdl~~~~~~~~~------- 263 (809)
..++.|++|+.+| +.++++........... ...|..+...++-+ .|++-+ |+.+.++++..-......
T Consensus 5 ~~~~~L~vGt~~G-l~~~~~~~~~~~~~i~~--~~~I~ql~vl~~~~-~llvLs-d~~l~~~~L~~l~~~~~~~~~~~~~ 79 (275)
T PF00780_consen 5 SWGDRLLVGTEDG-LYVYDLSDPSKPTRILK--LSSITQLSVLPELN-LLLVLS-DGQLYVYDLDSLEPVSTSAPLAFPK 79 (275)
T ss_pred cCCCEEEEEECCC-EEEEEecCCccceeEee--cceEEEEEEecccC-EEEEEc-CCccEEEEchhhccccccccccccc
Confidence 4578999999988 89999843333333332 23499999999877 444444 599999998765443311
Q ss_pred ------ecccccceEEEE--EecCC-CEEEEEcCCCcEEEEEeeCCCCCc-eeEEeccCCCCCCeeEEEecCCCEEEEEE
Q 003579 264 ------REAHDNAIISLH--FFANE-PVLMSASADNSIKMWIFDTTDGDP-RLLRFRSGHSAPPLCIRFYANGRHILSAG 333 (809)
Q Consensus 264 ------~~~h~~~V~~l~--~~~~~-~~l~s~s~d~~i~vw~~~~~~~~~-~~~~~~~~h~~~v~~i~~~~~~~~l~s~~ 333 (809)
.......+...+ -...+ ..|+.+ ..+.|.+|.+....... ...+.+ .-...+..++|. ++.++.|.
T Consensus 80 ~~~~~~~~~~~~~v~~f~~~~~~~~~~~L~va-~kk~i~i~~~~~~~~~f~~~~ke~-~lp~~~~~i~~~--~~~i~v~~ 155 (275)
T PF00780_consen 80 SRSLPTKLPETKGVSFFAVNGGHEGSRRLCVA-VKKKILIYEWNDPRNSFSKLLKEI-SLPDPPSSIAFL--GNKICVGT 155 (275)
T ss_pred cccccccccccCCeeEEeeccccccceEEEEE-ECCEEEEEEEECCcccccceeEEE-EcCCCcEEEEEe--CCEEEEEe
Confidence 111233444444 11233 344444 45689999887754333 344443 344788999998 55677777
Q ss_pred CCCCEEEEEeeecc
Q 003579 334 QDRAFRLFSVIQDQ 347 (809)
Q Consensus 334 ~dg~i~~wd~~~~~ 347 (809)
.++ ..+.|+.++.
T Consensus 156 ~~~-f~~idl~~~~ 168 (275)
T PF00780_consen 156 SKG-FYLIDLNTGS 168 (275)
T ss_pred CCc-eEEEecCCCC
Confidence 555 7788887543
No 362
>COG0823 TolB Periplasmic component of the Tol biopolymer transport system [Intracellular trafficking and secretion]
Probab=97.79 E-value=0.001 Score=71.17 Aligned_cols=167 Identities=17% Similarity=0.182 Sum_probs=112.4
Q ss_pred CeEEEEeCCCCceEEEEcCCCCCEEEEEEcCCCCEEEEE---eCC-CeEEEEEeeCCeEEEEEeccCCCcEEEEEEecCC
Q 003579 161 GSLQLWNISTKKKLYEFKGWGSSISSCVSSPALDVVAVG---CSD-GKIHVHNVRYDEELVTFTHSMRGAVTALAFSSDG 236 (809)
Q Consensus 161 g~i~lwd~~~~~~~~~~~~~~~~I~~l~~sp~~~~la~g---~~d-g~i~iwd~~~~~~~~~~~~~~~~~V~~l~fs~dg 236 (809)
..+.+-|.. |...+.+......+..-+|+|+++.++.. ... ..+.++++.+++....... .+.-...+|+|||
T Consensus 173 ~~l~~~D~d-g~~~~~l~~~~~~~~~p~ws~~~~~~~y~~f~~~~~~~i~~~~l~~g~~~~i~~~--~g~~~~P~fspDG 249 (425)
T COG0823 173 YELALGDYD-GYNQQKLTDSGSLILTPAWSPDGKKLAYVSFELGGCPRIYYLDLNTGKRPVILNF--NGNNGAPAFSPDG 249 (425)
T ss_pred ceEEEEccC-CcceeEecccCcceeccccCcCCCceEEEEEecCCCceEEEEeccCCccceeecc--CCccCCccCCCCC
Confidence 445555544 66666666667778888999999876654 222 4699999998887666653 4556788999999
Q ss_pred CCEEEEEcCCCc--EEEEECCCceeeeeeecccccceEEEEEecCCCEEEEE-cCCCcEEEEEeeCCCCCceeEEeccCC
Q 003579 237 QPLLASGASSGV--ISIWNLEKRRLQSVIREAHDNAIISLHFFANEPVLMSA-SADNSIKMWIFDTTDGDPRLLRFRSGH 313 (809)
Q Consensus 237 ~~~lasg~~dg~--I~iwdl~~~~~~~~~~~~h~~~V~~l~~~~~~~~l~s~-s~d~~i~vw~~~~~~~~~~~~~~~~~h 313 (809)
+.++.+...||. |.+.|+.++.... +. .-.+.-..-.|+|||+.++-. +..|.-.||.++......+.+..-.
T Consensus 250 ~~l~f~~~rdg~~~iy~~dl~~~~~~~-Lt-~~~gi~~~Ps~spdG~~ivf~Sdr~G~p~I~~~~~~g~~~~riT~~~-- 325 (425)
T COG0823 250 SKLAFSSSRDGSPDIYLMDLDGKNLPR-LT-NGFGINTSPSWSPDGSKIVFTSDRGGRPQIYLYDLEGSQVTRLTFSG-- 325 (425)
T ss_pred CEEEEEECCCCCccEEEEcCCCCccee-cc-cCCccccCccCCCCCCEEEEEeCCCCCcceEEECCCCCceeEeeccC--
Confidence 977777777775 5666887776443 33 222333377899999976655 4577888888777655443332221
Q ss_pred CCCCeeEEEecCCCEEEEEECC
Q 003579 314 SAPPLCIRFYANGRHILSAGQD 335 (809)
Q Consensus 314 ~~~v~~i~~~~~~~~l~s~~~d 335 (809)
..-..-.++|||++++..+..
T Consensus 326 -~~~~~p~~SpdG~~i~~~~~~ 346 (425)
T COG0823 326 -GGNSNPVWSPDGDKIVFESSS 346 (425)
T ss_pred -CCCcCccCCCCCCEEEEEecc
Confidence 122267789999999987743
No 363
>KOG1008 consensus Uncharacterized conserved protein, contains WD40 repeats [Function unknown]
Probab=97.79 E-value=8.1e-06 Score=85.68 Aligned_cols=201 Identities=15% Similarity=0.155 Sum_probs=137.1
Q ss_pred CCeEEEEEcCCC--CEEEEEeCCCcEEEEECCCCcee-eeeeCcccccccCccccEEEEEEcCCC-CEEEEEe----CcC
Q 003579 425 TAVKACTISACG--NFAVLGTAGGWIERFNLQSGISR-GSYLDMSERSNYAHNGEVVGVACDSTN-TLMISAG----YHG 496 (809)
Q Consensus 425 ~~v~~v~~s~~g--~~l~~g~~~g~i~i~~~~~~~~~-~~~~~~~~~~~~~h~~~v~~l~~~~~~-~~l~s~~----~dg 496 (809)
..+.|++..-+. ..+++|..+|.|.+-+....... ..+. .+|....++++|++.. ..||.|- .|.
T Consensus 57 qy~kcva~~y~~d~cIlavG~atG~I~l~s~r~~hdSs~E~t-------p~~ar~Ct~lAwneLDtn~LAagldkhrnds 129 (783)
T KOG1008|consen 57 QYVKCVASFYGNDRCILAVGSATGNISLLSVRHPHDSSAEVT-------PGYARPCTSLAWNELDTNHLAAGLDKHRNDS 129 (783)
T ss_pred CCceeehhhcCCchhhhhhccccCceEEeecCCcccccceec-------ccccccccccccccccHHHHHhhhhhhcccC
Confidence 456666665543 57899999999999988765544 3333 4788899999999864 4444442 356
Q ss_pred eEEEEECCCC--ceeeeee----cCCCeEEEEEeeCCCEEEEEeCCCeEEEEEcCCCeEEEEEecCCCCeeeEEECC-CC
Q 003579 497 DIKVWDFKGR--DLKSRWE----VGCSLVKIVYHRVNGLLATVADDLVIRLFDVVALRMVRKFEGHTDRITDFCFSE-DG 569 (809)
Q Consensus 497 ~i~iwd~~~~--~~~~~~~----~~~~i~~~~~s~~~~~la~~~~d~~I~v~d~~~~~~~~~~~~h~~~I~~l~fsp-dg 569 (809)
.+.|||+.++ .+..... ......+++|-.+.+++.+|.....+.++|++... .+.-.-.+..+..+..+| .+
T Consensus 130 ~~~Iwdi~s~ltvPke~~~fs~~~l~gqns~cwlrd~klvlaGm~sr~~~ifdlRqs~-~~~~svnTk~vqG~tVdp~~~ 208 (783)
T KOG1008|consen 130 SLKIWDINSLLTVPKESPLFSSSTLDGQNSVCWLRDTKLVLAGMTSRSVHIFDLRQSL-DSVSSVNTKYVQGITVDPFSP 208 (783)
T ss_pred CccceecccccCCCccccccccccccCccccccccCcchhhcccccchhhhhhhhhhh-hhhhhhhhhhcccceecCCCC
Confidence 7999999877 3322222 22456688999999999999999999999987321 111111334566677888 67
Q ss_pred CEEEEEeCCCeEEEEEcC-C-ccEEEEeee-----CcceEEEEEcCCC-CeEEEEEeCCCeEEEeecCcccCC
Q 003579 570 KWLLSSGMDGSLRIWDVI-L-ARQIDAIHV-----DVSITALSLSPNM-DVLATAHVDQNGVYLWVNRCMFSG 634 (809)
Q Consensus 570 ~~l~s~s~D~~I~vwd~~-~-~~~i~~~~~-----~~~v~~l~~spdg-~~lat~~~d~~~i~lW~~~~~~~~ 634 (809)
.|+++-. ||.|.+||.. . ..++..+.. ...+..++|+|.. ..|++...|..+|+++++...-.+
T Consensus 209 nY~cs~~-dg~iAiwD~~rnienpl~~i~~~~N~~~~~l~~~aycPtrtglla~l~RdS~tIrlydi~~v~t~ 280 (783)
T KOG1008|consen 209 NYFCSNS-DGDIAIWDTYRNIENPLQIILRNENKKPKQLFALAYCPTRTGLLAVLSRDSITIRLYDICVVGTE 280 (783)
T ss_pred Cceeccc-cCceeeccchhhhccHHHHHhhCCCCcccceeeEEeccCCcchhhhhccCcceEEEecccccCCc
Confidence 7888666 9999999942 2 122222222 2238999999954 368888888889999998654443
No 364
>KOG4640 consensus Anaphase-promoting complex (APC), subunit 4 [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=97.59 E-value=0.00029 Score=74.51 Aligned_cols=95 Identities=23% Similarity=0.297 Sum_probs=79.9
Q ss_pred CCCEEEEEEcCCCCEEEEEeCCCeEEEEEeeCCeEEEEEeccCCCcEE-EEEEecCCCCEEEEEcCCCcEEEEECCCcee
Q 003579 181 GSSISSCVSSPALDVVAVGCSDGKIHVHNVRYDEELVTFTHSMRGAVT-ALAFSSDGQPLLASGASSGVISIWNLEKRRL 259 (809)
Q Consensus 181 ~~~I~~l~~sp~~~~la~g~~dg~i~iwd~~~~~~~~~~~~~~~~~V~-~l~fs~dg~~~lasg~~dg~I~iwdl~~~~~ 259 (809)
...|.-+.|+|.-+++|.+..+|.|.++.+. .+.+.++..+ ...++ +++|.|||+ +||+|-.||+|++.|.+++..
T Consensus 20 ~~~i~~~ewnP~~dLiA~~t~~gelli~R~n-~qRlwtip~p-~~~v~~sL~W~~DGk-llaVg~kdG~I~L~Dve~~~~ 96 (665)
T KOG4640|consen 20 PINIKRIEWNPKMDLIATRTEKGELLIHRLN-WQRLWTIPIP-GENVTASLCWRPDGK-LLAVGFKDGTIRLHDVEKGGR 96 (665)
T ss_pred ccceEEEEEcCccchhheeccCCcEEEEEec-cceeEeccCC-CCccceeeeecCCCC-EEEEEecCCeEEEEEccCCCc
Confidence 4568889999999999999999999999988 7888888855 44555 999999999 999999999999999999987
Q ss_pred eeeeecccccceEEEEEec
Q 003579 260 QSVIREAHDNAIISLHFFA 278 (809)
Q Consensus 260 ~~~~~~~h~~~V~~l~~~~ 278 (809)
+......-...|.++.|.+
T Consensus 97 l~~~~~s~e~~is~~~w~~ 115 (665)
T KOG4640|consen 97 LVSFLFSVETDISKGIWDR 115 (665)
T ss_pred eeccccccccchheeeccc
Confidence 7764334566778887763
No 365
>KOG1008 consensus Uncharacterized conserved protein, contains WD40 repeats [Function unknown]
Probab=97.59 E-value=3.9e-05 Score=80.77 Aligned_cols=204 Identities=17% Similarity=0.209 Sum_probs=130.0
Q ss_pred cEEEEEEecCC-CCEEEEEcCCCcEEEEECCCceee-eeeecccccceEEEEEec-CCCEEEEEc----CCCcEEEEEee
Q 003579 226 AVTALAFSSDG-QPLLASGASSGVISIWNLEKRRLQ-SVIREAHDNAIISLHFFA-NEPVLMSAS----ADNSIKMWIFD 298 (809)
Q Consensus 226 ~V~~l~fs~dg-~~~lasg~~dg~I~iwdl~~~~~~-~~~~~~h~~~V~~l~~~~-~~~~l~s~s----~d~~i~vw~~~ 298 (809)
.+.|+++.-+. +.++++|..+|.|.+-..+...-. .....+|....++++|++ |...|+.|- .|..+.+||+.
T Consensus 58 y~kcva~~y~~d~cIlavG~atG~I~l~s~r~~hdSs~E~tp~~ar~Ct~lAwneLDtn~LAagldkhrnds~~~Iwdi~ 137 (783)
T KOG1008|consen 58 YVKCVASFYGNDRCILAVGSATGNISLLSVRHPHDSSAEVTPGYARPCTSLAWNELDTNHLAAGLDKHRNDSSLKIWDIN 137 (783)
T ss_pred CceeehhhcCCchhhhhhccccCceEEeecCCcccccceecccccccccccccccccHHHHHhhhhhhcccCCccceecc
Confidence 45566655433 358999999999999988765433 344447889999999998 445666653 36789999988
Q ss_pred CCCCCceeEEecc-CCCCCCeeEEEecCCCEEEEEECCCCEEEEEeeeccc-ceecchhhHHHHHhhccchhhhhccCce
Q 003579 299 TTDGDPRLLRFRS-GHSAPPLCIRFYANGRHILSAGQDRAFRLFSVIQDQQ-SRELSQRHVAKRARKLKMKEEELKLKPV 376 (809)
Q Consensus 299 ~~~~~~~~~~~~~-~h~~~v~~i~~~~~~~~l~s~~~dg~i~~wd~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~i 376 (809)
..-..|..-..+. +......+++|..+.+.+++|...+.+.++|++.... ..++
T Consensus 138 s~ltvPke~~~fs~~~l~gqns~cwlrd~klvlaGm~sr~~~ifdlRqs~~~~~sv------------------------ 193 (783)
T KOG1008|consen 138 SLLTVPKESPLFSSSTLDGQNSVCWLRDTKLVLAGMTSRSVHIFDLRQSLDSVSSV------------------------ 193 (783)
T ss_pred cccCCCccccccccccccCccccccccCcchhhcccccchhhhhhhhhhhhhhhhh------------------------
Confidence 7622222222222 2444566888888888899999888999999873321 1111
Q ss_pred eEEeeccccccccceeEEeecCCceEEEEEeeeeeecceeeecCCCCCCCeEEEEEcC-CCCEEEEEeCCCcEEEEEC-C
Q 003579 377 IAFDCAEIRERDWCNVVTCHMDTAQAYVWRLQNFVLGEHILRPCPENPTAVKACTISA-CGNFAVLGTAGGWIERFNL-Q 454 (809)
Q Consensus 377 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~v~~v~~s~-~g~~l~~g~~~g~i~i~~~-~ 454 (809)
....+..+.++| .+++++.-. +|.|.+||. .
T Consensus 194 ----------------------------------------------nTk~vqG~tVdp~~~nY~cs~~-dg~iAiwD~~r 226 (783)
T KOG1008|consen 194 ----------------------------------------------NTKYVQGITVDPFSPNYFCSNS-DGDIAIWDTYR 226 (783)
T ss_pred ----------------------------------------------hhhhcccceecCCCCCceeccc-cCceeeccchh
Confidence 113566777888 677776655 999999994 2
Q ss_pred CCc-eeeeeeCcccccccCccccEEEEEEcCCC-CEEEEEe-CcCeEEEEECC
Q 003579 455 SGI-SRGSYLDMSERSNYAHNGEVVGVACDSTN-TLMISAG-YHGDIKVWDFK 504 (809)
Q Consensus 455 ~~~-~~~~~~~~~~~~~~~h~~~v~~l~~~~~~-~~l~s~~-~dg~i~iwd~~ 504 (809)
.-+ ...... .........+..+++.|.. ..+++.. ..++|+.+|+.
T Consensus 227 nienpl~~i~----~~~N~~~~~l~~~aycPtrtglla~l~RdS~tIrlydi~ 275 (783)
T KOG1008|consen 227 NIENPLQIIL----RNENKKPKQLFALAYCPTRTGLLAVLSRDSITIRLYDIC 275 (783)
T ss_pred hhccHHHHHh----hCCCCcccceeeEEeccCCcchhhhhccCcceEEEeccc
Confidence 211 111110 0001222358999999954 3455555 45789999875
No 366
>PF02897 Peptidase_S9_N: Prolyl oligopeptidase, N-terminal beta-propeller domain; InterPro: IPR004106 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Proteolytic enzymes that exploit serine in their catalytic activity are ubiquitous, being found in viruses, bacteria and eukaryotes []. They include a wide range of peptidase activity, including exopeptidase, endopeptidase, oligopeptidase and omega-peptidase activity. Over 20 families (denoted S1 - S66) of serine protease have been identified, these being grouped into clans on the basis of structural similarity and other functional evidence []. Structures are known for members of the clans and the structures indicate that some appear to be totally unrelated, suggesting different evolutionary origins for the serine peptidases []. Not withstanding their different evolutionary origins, there are similarities in the reaction mechanisms of several peptidases. Chymotrypsin, subtilisin and carboxypeptidase C have a catalytic triad of serine, aspartate and histidine in common: serine acts as a nucleophile, aspartate as an electrophile, and histidine as a base []. The geometric orientations of the catalytic residues are similar between families, despite different protein folds []. The linear arrangements of the catalytic residues commonly reflect clan relationships. For example the catalytic triad in the chymotrypsin clan (PA) is ordered HDS, but is ordered DHS in the subtilisin clan (SB) and SDH in the carboxypeptidase clan (SC) [, ]. This entry represents the beta-propeller domain found at the N-terminal of prolyl oligopeptidase, including acylamino-acid-releasing enzyme (also known as acylaminoacyl peptidase), which belong to the MEROPS peptidase family S9 (clan SC), subfamily S9A. The prolyl oligopeptidase family consist of a number of evolutionary related peptidases whose catalytic activity seems to be provided by a charge relay system similar to that of the trypsin family of serine proteases, but which evolved by independent convergent evolution. The N-terminal domain of prolyl oligopeptidases form an unusual 7-bladed beta-propeller consisting of seven 4-stranded beta-sheet motifs. Prolyl oligopeptidase is a large cytosolic enzyme involved in the maturation and degradation of peptide hormones and neuropeptides, which relate to the induction of amnesia. The enzyme contains a peptidase domain, where its catalytic triad (Ser554, His680, Asp641) is covered by the central tunnel of the N-terminal beta-propeller domain. In this way, large structured peptides are excluded from the active site, thereby protecting larger peptides and proteins from proteolysis in the cytosol []. The protein fold of the peptidase domain for members of this family resembles that of serine carboxypeptidase D, the type example of clan SC. Mammalian acylaminoacyl peptidase is an exopeptidase that is a member of the same prolyl oligopeptidase family of serine peptidases. This enzyme removes acylated amino acid residues from the N terminus of oligopeptides [].; GO: 0004252 serine-type endopeptidase activity, 0006508 proteolysis; PDB: 2BKL_B 3DDU_A 1YR2_A 2XE4_A 1VZ3_A 3EQ9_A 1O6F_A 3EQ7_A 4AN0_A 1UOP_A ....
Probab=97.59 E-value=0.041 Score=59.97 Aligned_cols=106 Identities=12% Similarity=0.166 Sum_probs=60.7
Q ss_pred EEEEEEecCCCCEEEEEcCCC----cEEEEECCCceeeeeeecccccceEEEEEecCCCEEEEEcCCC---------cEE
Q 003579 227 VTALAFSSDGQPLLASGASSG----VISIWNLEKRRLQSVIREAHDNAIISLHFFANEPVLMSASADN---------SIK 293 (809)
Q Consensus 227 V~~l~fs~dg~~~lasg~~dg----~I~iwdl~~~~~~~~~~~~h~~~V~~l~~~~~~~~l~s~s~d~---------~i~ 293 (809)
+...+++|||+.++++-+..| .|+++|+++++.+...- .......+.|.+++..|+....+. .-+
T Consensus 126 ~~~~~~Spdg~~la~~~s~~G~e~~~l~v~Dl~tg~~l~d~i--~~~~~~~~~W~~d~~~~~y~~~~~~~~~~~~~~~~~ 203 (414)
T PF02897_consen 126 LGGFSVSPDGKRLAYSLSDGGSEWYTLRVFDLETGKFLPDGI--ENPKFSSVSWSDDGKGFFYTRFDEDQRTSDSGYPRQ 203 (414)
T ss_dssp EEEEEETTTSSEEEEEEEETTSSEEEEEEEETTTTEEEEEEE--EEEESEEEEECTTSSEEEEEECSTTTSS-CCGCCEE
T ss_pred eeeeeECCCCCEEEEEecCCCCceEEEEEEECCCCcCcCCcc--cccccceEEEeCCCCEEEEEEeCcccccccCCCCcE
Confidence 446788999994444444444 59999999997765432 111223499999988776665433 333
Q ss_pred EEEeeCCCCCceeEEeccCCCCC--CeeEEEecCCCEEEEEEC
Q 003579 294 MWIFDTTDGDPRLLRFRSGHSAP--PLCIRFYANGRHILSAGQ 334 (809)
Q Consensus 294 vw~~~~~~~~~~~~~~~~~h~~~--v~~i~~~~~~~~l~s~~~ 334 (809)
+|-...++....-...+...... ...+..++|+++++....
T Consensus 204 v~~~~~gt~~~~d~lvfe~~~~~~~~~~~~~s~d~~~l~i~~~ 246 (414)
T PF02897_consen 204 VYRHKLGTPQSEDELVFEEPDEPFWFVSVSRSKDGRYLFISSS 246 (414)
T ss_dssp EEEEETTS-GGG-EEEEC-TTCTTSEEEEEE-TTSSEEEEEEE
T ss_pred EEEEECCCChHhCeeEEeecCCCcEEEEEEecCcccEEEEEEE
Confidence 44334443332211222232333 457788889998875443
No 367
>KOG4640 consensus Anaphase-promoting complex (APC), subunit 4 [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=97.58 E-value=0.00032 Score=74.24 Aligned_cols=95 Identities=18% Similarity=0.273 Sum_probs=83.2
Q ss_pred ecCCCeEEEEEeeCCCEEEEEeCCCeEEEEEcCCCeEEEEEecCCCCee-eEEECCCCCEEEEEeCCCeEEEEEcCCccE
Q 003579 513 EVGCSLVKIVYHRVNGLLATVADDLVIRLFDVVALRMVRKFEGHTDRIT-DFCFSEDGKWLLSSGMDGSLRIWDVILARQ 591 (809)
Q Consensus 513 ~~~~~i~~~~~s~~~~~la~~~~d~~I~v~d~~~~~~~~~~~~h~~~I~-~l~fspdg~~l~s~s~D~~I~vwd~~~~~~ 591 (809)
.....+..+.|+|.-.++|.+..+|.+.+..+. .+.+.++.-|...++ +++|.|||+.||.|-.||+|++-|+.+|..
T Consensus 18 ~l~~~i~~~ewnP~~dLiA~~t~~gelli~R~n-~qRlwtip~p~~~v~~sL~W~~DGkllaVg~kdG~I~L~Dve~~~~ 96 (665)
T KOG4640|consen 18 SLPINIKRIEWNPKMDLIATRTEKGELLIHRLN-WQRLWTIPIPGENVTASLCWRPDGKLLAVGFKDGTIRLHDVEKGGR 96 (665)
T ss_pred ccccceEEEEEcCccchhheeccCCcEEEEEec-cceeEeccCCCCccceeeeecCCCCEEEEEecCCeEEEEEccCCCc
Confidence 344678889999999999999999999999888 777788887777777 999999999999999999999999999998
Q ss_pred EEE--eeeCcceEEEEEcC
Q 003579 592 IDA--IHVDVSITALSLSP 608 (809)
Q Consensus 592 i~~--~~~~~~v~~l~~sp 608 (809)
+.. +....+|.++.|++
T Consensus 97 l~~~~~s~e~~is~~~w~~ 115 (665)
T KOG4640|consen 97 LVSFLFSVETDISKGIWDR 115 (665)
T ss_pred eeccccccccchheeeccc
Confidence 887 55666799999973
No 368
>PF02897 Peptidase_S9_N: Prolyl oligopeptidase, N-terminal beta-propeller domain; InterPro: IPR004106 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Proteolytic enzymes that exploit serine in their catalytic activity are ubiquitous, being found in viruses, bacteria and eukaryotes []. They include a wide range of peptidase activity, including exopeptidase, endopeptidase, oligopeptidase and omega-peptidase activity. Over 20 families (denoted S1 - S66) of serine protease have been identified, these being grouped into clans on the basis of structural similarity and other functional evidence []. Structures are known for members of the clans and the structures indicate that some appear to be totally unrelated, suggesting different evolutionary origins for the serine peptidases []. Not withstanding their different evolutionary origins, there are similarities in the reaction mechanisms of several peptidases. Chymotrypsin, subtilisin and carboxypeptidase C have a catalytic triad of serine, aspartate and histidine in common: serine acts as a nucleophile, aspartate as an electrophile, and histidine as a base []. The geometric orientations of the catalytic residues are similar between families, despite different protein folds []. The linear arrangements of the catalytic residues commonly reflect clan relationships. For example the catalytic triad in the chymotrypsin clan (PA) is ordered HDS, but is ordered DHS in the subtilisin clan (SB) and SDH in the carboxypeptidase clan (SC) [, ]. This entry represents the beta-propeller domain found at the N-terminal of prolyl oligopeptidase, including acylamino-acid-releasing enzyme (also known as acylaminoacyl peptidase), which belong to the MEROPS peptidase family S9 (clan SC), subfamily S9A. The prolyl oligopeptidase family consist of a number of evolutionary related peptidases whose catalytic activity seems to be provided by a charge relay system similar to that of the trypsin family of serine proteases, but which evolved by independent convergent evolution. The N-terminal domain of prolyl oligopeptidases form an unusual 7-bladed beta-propeller consisting of seven 4-stranded beta-sheet motifs. Prolyl oligopeptidase is a large cytosolic enzyme involved in the maturation and degradation of peptide hormones and neuropeptides, which relate to the induction of amnesia. The enzyme contains a peptidase domain, where its catalytic triad (Ser554, His680, Asp641) is covered by the central tunnel of the N-terminal beta-propeller domain. In this way, large structured peptides are excluded from the active site, thereby protecting larger peptides and proteins from proteolysis in the cytosol []. The protein fold of the peptidase domain for members of this family resembles that of serine carboxypeptidase D, the type example of clan SC. Mammalian acylaminoacyl peptidase is an exopeptidase that is a member of the same prolyl oligopeptidase family of serine peptidases. This enzyme removes acylated amino acid residues from the N terminus of oligopeptides [].; GO: 0004252 serine-type endopeptidase activity, 0006508 proteolysis; PDB: 2BKL_B 3DDU_A 1YR2_A 2XE4_A 1VZ3_A 3EQ9_A 1O6F_A 3EQ7_A 4AN0_A 1UOP_A ....
Probab=97.56 E-value=0.11 Score=56.58 Aligned_cols=116 Identities=15% Similarity=0.190 Sum_probs=71.6
Q ss_pred EEEEEEcCCCCEEEEEe-CC----CeEEEEEeeCCeEEEEEeccCCCcEEEEEEecCCCCEEEEEcC----------CCc
Q 003579 184 ISSCVSSPALDVVAVGC-SD----GKIHVHNVRYDEELVTFTHSMRGAVTALAFSSDGQPLLASGAS----------SGV 248 (809)
Q Consensus 184 I~~l~~sp~~~~la~g~-~d----g~i~iwd~~~~~~~~~~~~~~~~~V~~l~fs~dg~~~lasg~~----------dg~ 248 (809)
+....+||+++++|.+- .. ..++++|+++++.+...... .....+.|.+|++.++.+... ...
T Consensus 126 ~~~~~~Spdg~~la~~~s~~G~e~~~l~v~Dl~tg~~l~d~i~~--~~~~~~~W~~d~~~~~y~~~~~~~~~~~~~~~~~ 203 (414)
T PF02897_consen 126 LGGFSVSPDGKRLAYSLSDGGSEWYTLRVFDLETGKFLPDGIEN--PKFSSVSWSDDGKGFFYTRFDEDQRTSDSGYPRQ 203 (414)
T ss_dssp EEEEEETTTSSEEEEEEEETTSSEEEEEEEETTTTEEEEEEEEE--EESEEEEECTTSSEEEEEECSTTTSS-CCGCCEE
T ss_pred eeeeeECCCCCEEEEEecCCCCceEEEEEEECCCCcCcCCcccc--cccceEEEeCCCCEEEEEEeCcccccccCCCCcE
Confidence 34678999999999763 33 35999999999876643221 122349999998855565532 234
Q ss_pred EEEEECCCceee--eeeecccccc-eEEEEEecCCCEEEEEcC-CCc-EEEEEeeCCC
Q 003579 249 ISIWNLEKRRLQ--SVIREAHDNA-IISLHFFANEPVLMSASA-DNS-IKMWIFDTTD 301 (809)
Q Consensus 249 I~iwdl~~~~~~--~~~~~~h~~~-V~~l~~~~~~~~l~s~s~-d~~-i~vw~~~~~~ 301 (809)
|+.|.+.+.... ..+....... ...+..++++++|+.... ..+ -.+|-++...
T Consensus 204 v~~~~~gt~~~~d~lvfe~~~~~~~~~~~~~s~d~~~l~i~~~~~~~~s~v~~~d~~~ 261 (414)
T PF02897_consen 204 VYRHKLGTPQSEDELVFEEPDEPFWFVSVSRSKDGRYLFISSSSGTSESEVYLLDLDD 261 (414)
T ss_dssp EEEEETTS-GGG-EEEEC-TTCTTSEEEEEE-TTSSEEEEEEESSSSEEEEEEEECCC
T ss_pred EEEEECCCChHhCeeEEeecCCCcEEEEEEecCcccEEEEEEEccccCCeEEEEeccc
Confidence 888888776433 3333122223 678889999997765433 333 4556555544
No 369
>PF05694 SBP56: 56kDa selenium binding protein (SBP56); InterPro: IPR008826 This family consists of several eukaryotic selenium binding proteins as well as three sequences from archaea. The exact function of this protein is unknown although it is thought that SBP56 participates in late stages of intra-Golgi protein transport []. The Lotus japonicus homologue of SBP56, LjSBP is thought to have more than one physiological role and can be implicated in controlling the oxidation/reduction status of target proteins in vesicular Golgi transport [].; GO: 0008430 selenium binding; PDB: 2ECE_A.
Probab=97.54 E-value=0.064 Score=55.69 Aligned_cols=182 Identities=15% Similarity=0.194 Sum_probs=87.0
Q ss_pred EEEcCCCCEEEEEe------CCCcEEEEECCCCceeeeeeCcccccccCccccEEEEEEcCCCCEEEEEeC---------
Q 003579 430 CTISACGNFAVLGT------AGGWIERFNLQSGISRGSYLDMSERSNYAHNGEVVGVACDSTNTLMISAGY--------- 494 (809)
Q Consensus 430 v~~s~~g~~l~~g~------~~g~i~i~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~l~s~~~--------- 494 (809)
+-.-|+|+.++++- .-|.+.++|-.+.......... .+...--..+-+.|..+.++|+..
T Consensus 135 ~Hclp~G~imIS~lGd~~G~g~Ggf~llD~~tf~v~g~We~~-----~~~~~~gYDfw~qpr~nvMiSSeWg~P~~~~~G 209 (461)
T PF05694_consen 135 VHCLPDGRIMISALGDADGNGPGGFVLLDGETFEVKGRWEKD-----RGPQPFGYDFWYQPRHNVMISSEWGAPSMFEKG 209 (461)
T ss_dssp EEE-SS--EEEEEEEETTS-S--EEEEE-TTT--EEEE--SB------TT------EEEETTTTEEEE-B---HHHHTT-
T ss_pred eeecCCccEEEEeccCCCCCCCCcEEEEcCccccccceeccC-----CCCCCCCCCeEEcCCCCEEEEeccCChhhcccC
Confidence 33445666666532 2256777887776666655421 012233456677888888887642
Q ss_pred -----------cCeEEEEECCCCceeeeeecC---CCeEEEEEeeC--CCE--EEEEeCCCeEEEEEcCCCe----EEEE
Q 003579 495 -----------HGDIKVWDFKGRDLKSRWEVG---CSLVKIVYHRV--NGL--LATVADDLVIRLFDVVALR----MVRK 552 (809)
Q Consensus 495 -----------dg~i~iwd~~~~~~~~~~~~~---~~i~~~~~s~~--~~~--la~~~~d~~I~v~d~~~~~----~~~~ 552 (809)
..++.+||+.+.++++++... .....+.|..+ ..+ +.++......++|.-+.++ .+..
T Consensus 210 f~~~d~~~~~yG~~l~vWD~~~r~~~Q~idLg~~g~~pLEvRflH~P~~~~gFvg~aLss~i~~~~k~~~g~W~a~kVi~ 289 (461)
T PF05694_consen 210 FNPEDLEAGKYGHSLHVWDWSTRKLLQTIDLGEEGQMPLEVRFLHDPDANYGFVGCALSSSIWRFYKDDDGEWAAEKVID 289 (461)
T ss_dssp --TTTHHHH-S--EEEEEETTTTEEEEEEES-TTEEEEEEEEE-SSTT--EEEEEEE--EEEEEEEE-ETTEEEEEEEEE
T ss_pred CChhHhhcccccCeEEEEECCCCcEeeEEecCCCCCceEEEEecCCCCccceEEEEeccceEEEEEEcCCCCeeeeEEEE
Confidence 357999999999999999887 34556666654 333 3333333333344334332 1222
Q ss_pred Eec-----C------------CCCeeeEEECCCCCEEEEEe-CCCeEEEEEcCCc---cEEEEeeeCc------------
Q 003579 553 FEG-----H------------TDRITDFCFSEDGKWLLSSG-MDGSLRIWDVILA---RQIDAIHVDV------------ 599 (809)
Q Consensus 553 ~~~-----h------------~~~I~~l~fspdg~~l~s~s-~D~~I~vwd~~~~---~~i~~~~~~~------------ 599 (809)
+.. - ..-|++|..|.|.|+|..+. .+|.||.||+.+- +++..+....
T Consensus 290 ip~~~v~~~~lp~ml~~~~~~P~LitDI~iSlDDrfLYvs~W~~GdvrqYDISDP~~Pkl~gqv~lGG~~~~~~~~~v~g 369 (461)
T PF05694_consen 290 IPAKKVEGWILPEMLKPFGAVPPLITDILISLDDRFLYVSNWLHGDVRQYDISDPFNPKLVGQVFLGGSIRKGDHPVVKG 369 (461)
T ss_dssp E--EE--SS---GGGGGG-EE------EEE-TTS-EEEEEETTTTEEEEEE-SSTTS-EEEEEEE-BTTTT-B--TTS--
T ss_pred CCCcccCcccccccccccccCCCceEeEEEccCCCEEEEEcccCCcEEEEecCCCCCCcEEeEEEECcEeccCCCccccc
Confidence 211 0 24489999999999997554 8999999999863 3444433221
Q ss_pred -----ceEEEEEcCCCCeEEEE
Q 003579 600 -----SITALSLSPNMDVLATA 616 (809)
Q Consensus 600 -----~v~~l~~spdg~~lat~ 616 (809)
...-+..|-||+.|..+
T Consensus 370 ~~l~GgPqMvqlS~DGkRlYvT 391 (461)
T PF05694_consen 370 KRLRGGPQMVQLSLDGKRLYVT 391 (461)
T ss_dssp ----S----EEE-TTSSEEEEE
T ss_pred cccCCCCCeEEEccCCeEEEEE
Confidence 13456666677666655
No 370
>KOG1898 consensus Splicing factor 3b, subunit 3 [RNA processing and modification]
Probab=97.45 E-value=0.2 Score=57.04 Aligned_cols=109 Identities=18% Similarity=0.257 Sum_probs=66.4
Q ss_pred CEEEEEeCCCeEEEEEeeCCeEEEEEecc--CCCcEEEEEEecCC-----CCEEEEEcCCCcEEEEECCCceeeeeee-c
Q 003579 194 DVVAVGCSDGKIHVHNVRYDEELVTFTHS--MRGAVTALAFSSDG-----QPLLASGASSGVISIWNLEKRRLQSVIR-E 265 (809)
Q Consensus 194 ~~la~g~~dg~i~iwd~~~~~~~~~~~~~--~~~~V~~l~fs~dg-----~~~lasg~~dg~I~iwdl~~~~~~~~~~-~ 265 (809)
+.++++..+|.+.-+.......+..+..+ ....|.|+++.++. ..+++.|+.|++++++.+.....+..+. .
T Consensus 550 ~qiVvalSngelvyfe~d~sgql~E~~er~tl~~~vac~ai~~~~~g~krsrfla~a~~d~~vriisL~p~d~l~~ls~q 629 (1205)
T KOG1898|consen 550 RQIVVALSNGELVYFEGDVSGQLNEFTERVTLSTDVACLAIGQDPEGEKRSRFLALASVDNMVRIISLDPSDCLQPLSVQ 629 (1205)
T ss_pred eEEEEEccCCeEEEEEeccCccceeeeeeeeeceeehhhccCCCCcchhhcceeeeeccccceeEEEecCcceEEEcccc
Confidence 45666666677666665544444444321 24578999998875 2479999999999999988665554443 2
Q ss_pred ccccceEEEEEec---CC------CEEEEEcCCCcEEEEEeeCCCC
Q 003579 266 AHDNAIISLHFFA---NE------PVLMSASADNSIKMWIFDTTDG 302 (809)
Q Consensus 266 ~h~~~V~~l~~~~---~~------~~l~s~s~d~~i~vw~~~~~~~ 302 (809)
+-..++.++.+.+ ++ -+|.+|-.+|.+.-..++.-.+
T Consensus 630 ~l~~~~~s~~iv~~~~~~~~~~~~L~l~~GL~NGvllR~~id~v~G 675 (1205)
T KOG1898|consen 630 GLSSPPESLCIVEMEATGGTDVAQLYLLIGLRNGVLLRFVIDTVTG 675 (1205)
T ss_pred ccCCCccceEEEEecccCCccceeEEEEecccccEEEEEEeccccc
Confidence 3344555555543 22 2455666666655555555444
No 371
>smart00320 WD40 WD40 repeats. Note that these repeats are permuted with respect to the structural repeats (blades) of the beta propeller domain.
Probab=97.41 E-value=0.00048 Score=45.24 Aligned_cols=39 Identities=38% Similarity=0.841 Sum_probs=35.2
Q ss_pred CeEEEEEecCCCCeeeEEECCCCCEEEEEeCCCeEEEEE
Q 003579 547 LRMVRKFEGHTDRITDFCFSEDGKWLLSSGMDGSLRIWD 585 (809)
Q Consensus 547 ~~~~~~~~~h~~~I~~l~fspdg~~l~s~s~D~~I~vwd 585 (809)
++....+..|...|.++.|+++++++++++.|+.+++|+
T Consensus 2 ~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~d~~~~~~~ 40 (40)
T smart00320 2 GELLKTLKGHTGPVTSVAFSPDGKYLASASDDGTIKLWD 40 (40)
T ss_pred cEEEEEEEecCCceeEEEECCCCCEEEEecCCCeEEEcC
Confidence 456677888999999999999999999999999999996
No 372
>PF14655 RAB3GAP2_N: Rab3 GTPase-activating protein regulatory subunit N-terminus
Probab=97.41 E-value=0.25 Score=52.35 Aligned_cols=91 Identities=15% Similarity=0.232 Sum_probs=57.9
Q ss_pred CCCeEEEEEcCCCCEEEEEeCCCcEEEEECCCCceeeeeeCccccc-------ccCcc--ccEEEEEEcCC-CC-EEEEE
Q 003579 424 PTAVKACTISACGNFAVLGTAGGWIERFNLQSGISRGSYLDMSERS-------NYAHN--GEVVGVACDST-NT-LMISA 492 (809)
Q Consensus 424 ~~~v~~v~~s~~g~~l~~g~~~g~i~i~~~~~~~~~~~~~~~~~~~-------~~~h~--~~v~~l~~~~~-~~-~l~s~ 492 (809)
...+.+++++|+++++++..+-|.|.++|+.++..++.++...... ...+. ..-......+. .. +++-+
T Consensus 307 ~R~~~~i~~sP~~~laA~tDslGRV~LiD~~~~~vvrmWKGYRdAqc~wi~~~~~~~~~~~~~~~~~~~~~~~l~LvIya 386 (415)
T PF14655_consen 307 KREGESICLSPSGRLAAVTDSLGRVLLIDVARGIVVRMWKGYRDAQCGWIEVPEEGDRDRSNSNSPKSSSRFALFLVIYA 386 (415)
T ss_pred CceEEEEEECCCCCEEEEEcCCCcEEEEECCCChhhhhhccCccceEEEEEeecccccccccccccCCCCcceEEEEEEe
Confidence 4668899999999999999888999999999998887765321110 00000 00000000000 01 33445
Q ss_pred eCcCeEEEEECCCCceeeeeec
Q 003579 493 GYHGDIKVWDFKGRDLKSRWEV 514 (809)
Q Consensus 493 ~~dg~i~iwd~~~~~~~~~~~~ 514 (809)
-.-|.|.||.++.+..+..+..
T Consensus 387 prRg~lEvW~~~~g~Rv~a~~v 408 (415)
T PF14655_consen 387 PRRGILEVWSMRQGPRVAAFNV 408 (415)
T ss_pred ccCCeEEEEecCCCCEEEEEEe
Confidence 5679999999999887766654
No 373
>COG3490 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=97.40 E-value=0.14 Score=49.45 Aligned_cols=273 Identities=12% Similarity=0.089 Sum_probs=151.1
Q ss_pred CeEEEEEeccCCCcEEEEEEecCCCCEEEEEcCCCc-EEEEECCCceeeeeeecccccc--eEEEEEecCCCEEEEEcCC
Q 003579 213 DEELVTFTHSMRGAVTALAFSSDGQPLLASGASSGV-ISIWNLEKRRLQSVIREAHDNA--IISLHFFANEPVLMSASAD 289 (809)
Q Consensus 213 ~~~~~~~~~~~~~~V~~l~fs~dg~~~lasg~~dg~-I~iwdl~~~~~~~~~~~~h~~~--V~~l~~~~~~~~l~s~s~d 289 (809)
|+.+..... ...-..++|+|....-++.+-.-|+ ..++|....+...++. ..++. --.-.|+|||.+|...-.|
T Consensus 58 Gk~v~~~~l--paR~Hgi~~~p~~~ravafARrPGtf~~vfD~~~~~~pv~~~-s~~~RHfyGHGvfs~dG~~LYATEnd 134 (366)
T COG3490 58 GKIVFATAL--PARGHGIAFHPALPRAVAFARRPGTFAMVFDPNGAQEPVTLV-SQEGRHFYGHGVFSPDGRLLYATEND 134 (366)
T ss_pred Cceeeeeec--ccccCCeecCCCCcceEEEEecCCceEEEECCCCCcCcEEEe-cccCceeecccccCCCCcEEEeecCC
Confidence 444444443 3455678899887756666665554 5788998887666654 21111 1234689999998876543
Q ss_pred -----CcEEEEEeeCCCCCceeEEeccCCCCCCeeEEEecCCCEEEEEECCCCEEEE-EeeecccceecchhhHHHHHhh
Q 003579 290 -----NSIKMWIFDTTDGDPRLLRFRSGHSAPPLCIRFYANGRHILSAGQDRAFRLF-SVIQDQQSRELSQRHVAKRARK 363 (809)
Q Consensus 290 -----~~i~vw~~~~~~~~~~~~~~~~~h~~~v~~i~~~~~~~~l~s~~~dg~i~~w-d~~~~~~~~~~~~~~~~~~~~~ 363 (809)
|.|-+||.+.. ...+-.+..|.-.+..+.+.+||+.++.+. |-|..- +....+....
T Consensus 135 fd~~rGViGvYd~r~~---fqrvgE~~t~GiGpHev~lm~DGrtlvvan--GGIethpdfgR~~lNld------------ 197 (366)
T COG3490 135 FDPNRGVIGVYDAREG---FQRVGEFSTHGIGPHEVTLMADGRTLVVAN--GGIETHPDFGRTELNLD------------ 197 (366)
T ss_pred CCCCCceEEEEecccc---cceecccccCCcCcceeEEecCCcEEEEeC--CceecccccCccccchh------------
Confidence 78999988743 244556678888899999999999888764 334433 2111100000
Q ss_pred ccchhhhhccCceeEEeeccccccccceeEEeecCCceEEEEEeeeeee-cceeeecCCCCCCCeEEEEEcCCCCEEEEE
Q 003579 364 LKMKEEELKLKPVIAFDCAEIRERDWCNVVTCHMDTAQAYVWRLQNFVL-GEHILRPCPENPTAVKACTISACGNFAVLG 442 (809)
Q Consensus 364 ~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~-~~~~~~~~~~~~~~v~~v~~s~~g~~l~~g 442 (809)
.-...+.+.+..+..+ .++.+. ...+.-.+..+++.+||+..+-+
T Consensus 198 ---------------------------------sMePSlvlld~atG~liekh~Lp-~~l~~lSiRHld~g~dgtvwfgc 243 (366)
T COG3490 198 ---------------------------------SMEPSLVLLDAATGNLIEKHTLP-ASLRQLSIRHLDIGRDGTVWFGC 243 (366)
T ss_pred ---------------------------------hcCccEEEEeccccchhhhccCc-hhhhhcceeeeeeCCCCcEEEEE
Confidence 0011122222222222 222222 22344678888999988876654
Q ss_pred eCCCcE----EEE-ECCCCceeeeeeCcccccccCccccEEEEEEcCCCCEEEEEe-CcCeEEEEECCCCceeeeeecCC
Q 003579 443 TAGGWI----ERF-NLQSGISRGSYLDMSERSNYAHNGEVVGVACDSTNTLMISAG-YHGDIKVWDFKGRDLKSRWEVGC 516 (809)
Q Consensus 443 ~~~g~i----~i~-~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~l~s~~-~dg~i~iwd~~~~~~~~~~~~~~ 516 (809)
--.|.- -+. -...|+....+ ..+..........|-+++.+.+..+++..+ ..+...+||..++..+..-....
T Consensus 244 Qy~G~~~d~ppLvg~~~~g~~l~~~-~~pee~~~~~anYigsiA~n~~~glV~lTSP~GN~~vi~da~tG~vv~~a~l~d 322 (366)
T COG3490 244 QYRGPRNDLPPLVGHFRKGEPLEFL-DLPEEQTAAFANYIGSIAANRRDGLVALTSPRGNRAVIWDAATGAVVSEAALPD 322 (366)
T ss_pred EeeCCCccCCcceeeccCCCcCccc-CCCHHHHHHHHhhhhheeecccCCeEEEecCCCCeEEEEEcCCCcEEecccccc
Confidence 333211 011 11112222211 111111223445677888887666665555 55667899999998876554331
Q ss_pred CeEEEEEeeCCCEEEEEeCCCeEEEEE
Q 003579 517 SLVKIVYHRVNGLLATVADDLVIRLFD 543 (809)
Q Consensus 517 ~i~~~~~s~~~~~la~~~~d~~I~v~d 543 (809)
+.-..+...-+++.+.+|.+..+.
T Consensus 323 ---aaGva~~~~gf~vssg~G~~~~~s 346 (366)
T COG3490 323 ---AAGVAAAKGGFAVSSGQGRIIFYS 346 (366)
T ss_pred ---cccceeccCceEEecCCceEEecc
Confidence 111223344456666778877763
No 374
>COG3386 Gluconolactonase [Carbohydrate transport and metabolism]
Probab=97.40 E-value=0.055 Score=55.16 Aligned_cols=238 Identities=16% Similarity=0.124 Sum_probs=131.3
Q ss_pred EEEEecCCCCEEEEEcCCCcEEEEECCCceeeeeeecccccceEEEEEecCCCEEEEEcCCCcEEEEEeeCCCCCceeEE
Q 003579 229 ALAFSSDGQPLLASGASSGVISIWNLEKRRLQSVIREAHDNAIISLHFFANEPVLMSASADNSIKMWIFDTTDGDPRLLR 308 (809)
Q Consensus 229 ~l~fs~dg~~~lasg~~dg~I~iwdl~~~~~~~~~~~~h~~~V~~l~~~~~~~~l~s~s~d~~i~vw~~~~~~~~~~~~~ 308 (809)
+..|.++...++.+--..+.|.-||..+++..... +.+.+.++.....+..|+++.. .+.+++.+.... .+.+.
T Consensus 29 gP~w~~~~~~L~w~DI~~~~i~r~~~~~g~~~~~~---~p~~~~~~~~~d~~g~Lv~~~~--g~~~~~~~~~~~-~t~~~ 102 (307)
T COG3386 29 GPVWDPDRGALLWVDILGGRIHRLDPETGKKRVFP---SPGGFSSGALIDAGGRLIACEH--GVRLLDPDTGGK-ITLLA 102 (307)
T ss_pred CccCcCCCCEEEEEeCCCCeEEEecCCcCceEEEE---CCCCcccceeecCCCeEEEEcc--ccEEEeccCCce-eEEec
Confidence 34566777656666667889999998876543332 3344555555555556666543 356666533221 01221
Q ss_pred ec-cCC-CCCCeeEEEecCCCEEEEEECCCCEEEEEeeecccceecchhhHHHHHhhccchhhhhccCceeEEeeccccc
Q 003579 309 FR-SGH-SAPPLCIRFYANGRHILSAGQDRAFRLFSVIQDQQSRELSQRHVAKRARKLKMKEEELKLKPVIAFDCAEIRE 386 (809)
Q Consensus 309 ~~-~~h-~~~v~~i~~~~~~~~l~s~~~dg~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~ 386 (809)
.. .+. ....+.+...|+|.+-++... . ++ .+....
T Consensus 103 ~~~~~~~~~r~ND~~v~pdG~~wfgt~~-~----~~--~~~~~~------------------------------------ 139 (307)
T COG3386 103 EPEDGLPLNRPNDGVVDPDGRIWFGDMG-Y----FD--LGKSEE------------------------------------ 139 (307)
T ss_pred cccCCCCcCCCCceeEcCCCCEEEeCCC-c----cc--cCcccc------------------------------------
Confidence 11 111 234567777777765443322 1 11 000000
Q ss_pred cccceeEEeecCCceEEEEEeeeeeecceeeecCCCCCCCeEEEEEcCCCCEEEEEeCC-CcEEEEECCC--Cceeeeee
Q 003579 387 RDWCNVVTCHMDTAQAYVWRLQNFVLGEHILRPCPENPTAVKACTISACGNFAVLGTAG-GWIERFNLQS--GISRGSYL 463 (809)
Q Consensus 387 ~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~v~~v~~s~~g~~l~~g~~~-g~i~i~~~~~--~~~~~~~~ 463 (809)
...+ .+|.+... .........+-.....++|||||+.+++..+. +.|+.|++.. +.....
T Consensus 140 ----------~~~G--~lyr~~p~---g~~~~l~~~~~~~~NGla~SpDg~tly~aDT~~~~i~r~~~d~~~g~~~~~-- 202 (307)
T COG3386 140 ----------RPTG--SLYRVDPD---GGVVRLLDDDLTIPNGLAFSPDGKTLYVADTPANRIHRYDLDPATGPIGGR-- 202 (307)
T ss_pred ----------CCcc--eEEEEcCC---CCEEEeecCcEEecCceEECCCCCEEEEEeCCCCeEEEEecCcccCccCCc--
Confidence 0011 22222210 11111111223556789999999888777665 8899988763 211111
Q ss_pred CcccccccCccccEEEEEEcCCCCEEEEEeCcC-eEEEEECCCCceeeeeecC-CCeEEEEEee-CCCEEEEEe
Q 003579 464 DMSERSNYAHNGEVVGVACDSTNTLMISAGYHG-DIKVWDFKGRDLKSRWEVG-CSLVKIVYHR-VNGLLATVA 534 (809)
Q Consensus 464 ~~~~~~~~~h~~~v~~l~~~~~~~~l~s~~~dg-~i~iwd~~~~~~~~~~~~~-~~i~~~~~s~-~~~~la~~~ 534 (809)
........+.+..-+++++.+|.+.+++..+| .|.+|+-. ++++..+... ..+++++|-- +.+.|.+.+
T Consensus 203 -~~~~~~~~~~G~PDG~~vDadG~lw~~a~~~g~~v~~~~pd-G~l~~~i~lP~~~~t~~~FgG~~~~~L~iTs 274 (307)
T COG3386 203 -RGFVDFDEEPGLPDGMAVDADGNLWVAAVWGGGRVVRFNPD-GKLLGEIKLPVKRPTNPAFGGPDLNTLYITS 274 (307)
T ss_pred -ceEEEccCCCCCCCceEEeCCCCEEEecccCCceEEEECCC-CcEEEEEECCCCCCccceEeCCCcCEEEEEe
Confidence 00000123456777899999999887555554 89999988 9999999888 7788888854 334444433
No 375
>TIGR03074 PQQ_membr_DH membrane-bound PQQ-dependent dehydrogenase, glucose/quinate/shikimate family. This protein family has a phylogenetic distribution very similar to that coenzyme PQQ biosynthesis enzymes, as shown by partial phylogenetic profiling. Members of this family have several predicted transmembrane helices in the N-terminal region, and include the quinoprotein glucose dehydrogenase (EC 1.1.5.2) of Escherichia coli and the quinate/shikimate dehydrogenase of Acinetobacter sp. ADP1 (EC 1.1.99.25). Sequences closely related except for the absense of the N-terminal hydrophobic region, scoring in the gray zone between the trusted and noise cutoffs, include PQQ-dependent glycerol (EC 1.1.99.22) and and other polyol (sugar alcohol) dehydrogenases.
Probab=97.39 E-value=0.46 Score=55.00 Aligned_cols=110 Identities=14% Similarity=0.175 Sum_probs=76.0
Q ss_pred CEEEEEeCCCeEEEEeCCCCceEEEEcCCCCC--------EEEEEEc----------------CCCCEEEEEeCCCeEEE
Q 003579 152 NKVIVGSQEGSLQLWNISTKKKLYEFKGWGSS--------ISSCVSS----------------PALDVVAVGCSDGKIHV 207 (809)
Q Consensus 152 ~~l~~~~~dg~i~lwd~~~~~~~~~~~~~~~~--------I~~l~~s----------------p~~~~la~g~~dg~i~i 207 (809)
+.|++++.++.|.-.|.++|+.+.++...... ...+++. .....|+.++.|+.+.-
T Consensus 195 g~lYv~t~~~~V~ALDa~TGk~lW~~d~~~~~~~~~~~~~cRGvay~~~p~~~~~~~~~~~p~~~~~rV~~~T~Dg~LiA 274 (764)
T TIGR03074 195 DTLYLCTPHNKVIALDAATGKEKWKFDPKLKTEAGRQHQTCRGVSYYDAPAAAAGPAAPAAPADCARRIILPTSDARLIA 274 (764)
T ss_pred CEEEEECCCCeEEEEECCCCcEEEEEcCCCCcccccccccccceEEecCCcccccccccccccccCCEEEEecCCCeEEE
Confidence 57999999999999999999999988643211 1112221 13458889999999999
Q ss_pred EEeeCCeEEEEEeccCCCcE----------------EEEEEecCCCCEEEEEcC----------CCcEEEEECCCceeee
Q 003579 208 HNVRYDEELVTFTHSMRGAV----------------TALAFSSDGQPLLASGAS----------SGVISIWNLEKRRLQS 261 (809)
Q Consensus 208 wd~~~~~~~~~~~~~~~~~V----------------~~l~fs~dg~~~lasg~~----------dg~I~iwdl~~~~~~~ 261 (809)
.|.++|+.+..+... +.| ++--.--++ .+++|+. +|.|+-+|.++|+++.
T Consensus 275 LDA~TGk~~W~fg~~--G~vdl~~~~g~~~~g~~~~ts~P~V~~g--~VIvG~~v~d~~~~~~~~G~I~A~Da~TGkl~W 350 (764)
T TIGR03074 275 LDADTGKLCEDFGNN--GTVDLTAGMGTTPPGYYYPTSPPLVAGT--TVVIGGRVADNYSTDEPSGVIRAFDVNTGALVW 350 (764)
T ss_pred EECCCCCEEEEecCC--CceeeecccCcCCCcccccccCCEEECC--EEEEEecccccccccCCCcEEEEEECCCCcEee
Confidence 999999999876532 111 111111133 4555642 6889999999999988
Q ss_pred eeec
Q 003579 262 VIRE 265 (809)
Q Consensus 262 ~~~~ 265 (809)
....
T Consensus 351 ~~~~ 354 (764)
T TIGR03074 351 AWDP 354 (764)
T ss_pred EEec
Confidence 8763
No 376
>PF08553 VID27: VID27 cytoplasmic protein; InterPro: IPR013863 This entry represents fungal and plant proteins and contains many hypothetical proteins. Vid27p is a cytoplasmic protein of unknown function, possibly regulates import of fructose-1,6-bisphosphatase into Vacuolar Import and Degradation (Vid) vesicles and is not essential for proteasome-dependent degradation of fructose-1,6-bisphosphatase (FBPase) [, ].
Probab=97.38 E-value=0.013 Score=66.38 Aligned_cols=139 Identities=13% Similarity=0.209 Sum_probs=98.5
Q ss_pred CCEEEEE-eCcCeEEEEECCCCceeeeeecCCCeEEEEEeeC-------CCEEEEEeCCCeEEEEEcCCC--eEEEE-Ee
Q 003579 486 NTLMISA-GYHGDIKVWDFKGRDLKSRWEVGCSLVKIVYHRV-------NGLLATVADDLVIRLFDVVAL--RMVRK-FE 554 (809)
Q Consensus 486 ~~~l~s~-~~dg~i~iwd~~~~~~~~~~~~~~~i~~~~~s~~-------~~~la~~~~d~~I~v~d~~~~--~~~~~-~~ 554 (809)
..+|+.. .....|+-.|+..|+.+..+..+..+.-..+.|+ +....+|-++..+..||.+-. +++.. ..
T Consensus 493 ~~mil~~~~~~~~ly~mDLe~GKVV~eW~~~~~~~v~~~~p~~K~aqlt~e~tflGls~n~lfriDpR~~~~k~v~~~~k 572 (794)
T PF08553_consen 493 RNMILLDPNNPNKLYKMDLERGKVVEEWKVHDDIPVVDIAPDSKFAQLTNEQTFLGLSDNSLFRIDPRLSGNKLVDSQSK 572 (794)
T ss_pred cceEeecCCCCCceEEEecCCCcEEEEeecCCCcceeEecccccccccCCCceEEEECCCceEEeccCCCCCceeecccc
Confidence 3444443 3457899999999999999998855544455554 335577888899999998753 33321 11
Q ss_pred --cCCCCeeeEEECCCCCEEEEEeCCCeEEEEEcCCccEEE-Eee-eCcceEEEEEcCCCCeEEEEEeCCCeEEEeec
Q 003579 555 --GHTDRITDFCFSEDGKWLLSSGMDGSLRIWDVILARQID-AIH-VDVSITALSLSPNMDVLATAHVDQNGVYLWVN 628 (809)
Q Consensus 555 --~h~~~I~~l~fspdg~~l~s~s~D~~I~vwd~~~~~~i~-~~~-~~~~v~~l~~spdg~~lat~~~d~~~i~lW~~ 628 (809)
......++++-+.+| +||.||.+|.||+||- .|..-+ .+. ...+|.+|..+.||++|+.++... +-|.+.
T Consensus 573 ~Y~~~~~Fs~~aTt~~G-~iavgs~~G~IRLyd~-~g~~AKT~lp~lG~pI~~iDvt~DGkwilaTc~ty--LlLi~t 646 (794)
T PF08553_consen 573 QYSSKNNFSCFATTEDG-YIAVGSNKGDIRLYDR-LGKRAKTALPGLGDPIIGIDVTADGKWILATCKTY--LLLIDT 646 (794)
T ss_pred ccccCCCceEEEecCCc-eEEEEeCCCcEEeecc-cchhhhhcCCCCCCCeeEEEecCCCcEEEEeecce--EEEEEE
Confidence 133557788888887 6899999999999994 343222 222 356899999999999999888764 777775
No 377
>PF07995 GSDH: Glucose / Sorbosone dehydrogenase; InterPro: IPR012938 Proteins containing this domain are thought to be glucose/sorbosone dehydrogenases. The best characterised of these proteins is soluble glucose dehydrogenase (P13650 from SWISSPROT) from Acinetobacter calcoaceticus, which oxidises glucose to gluconolactone. The enzyme is a calcium-dependent homodimer which uses PQQ as a cofactor [].; GO: 0016901 oxidoreductase activity, acting on the CH-OH group of donors, quinone or similar compound as acceptor, 0048038 quinone binding, 0005975 carbohydrate metabolic process; PDB: 2ISM_A 2WG3_D 3HO5_A 3HO4_A 3HO3_A 2WFT_A 2WG4_B 2WFX_B 1CRU_A 1CQ1_B ....
Probab=97.35 E-value=0.18 Score=52.61 Aligned_cols=73 Identities=19% Similarity=0.198 Sum_probs=46.8
Q ss_pred eeeecCCCeEEEEEeeC-------CCEEEEEeCCCeEEEEEcCCCeEEE---E-EecCCCCeeeEEECCCCCEEEEEeCC
Q 003579 510 SRWEVGCSLVKIVYHRV-------NGLLATVADDLVIRLFDVVALRMVR---K-FEGHTDRITDFCFSEDGKWLLSSGMD 578 (809)
Q Consensus 510 ~~~~~~~~i~~~~~s~~-------~~~la~~~~d~~I~v~d~~~~~~~~---~-~~~h~~~I~~l~fspdg~~l~s~s~D 578 (809)
..+..+..+..+.|.+. |.++++....+.|....++....+. . +.....++.++++.|||.+.++.+.+
T Consensus 247 ~~~~~~~ap~G~~~y~g~~fp~~~g~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~r~~~v~~~pDG~Lyv~~d~~ 326 (331)
T PF07995_consen 247 FAYPPHSAPTGIIFYRGSAFPEYRGDLFVADYGGGRIWRLDLDEDGSVTEEEEFLGGFGGRPRDVAQGPDGALYVSDDSD 326 (331)
T ss_dssp EEETTT--EEEEEEE-SSSSGGGTTEEEEEETTTTEEEEEEEETTEEEEEEEEECTTSSS-EEEEEEETTSEEEEEE-TT
T ss_pred eeecCccccCceEEECCccCccccCcEEEecCCCCEEEEEeeecCCCccceEEccccCCCCceEEEEcCCCeEEEEECCC
Confidence 34445566777777643 4566666667888888887553322 2 22344589999999999998888888
Q ss_pred CeEE
Q 003579 579 GSLR 582 (809)
Q Consensus 579 ~~I~ 582 (809)
|.|.
T Consensus 327 G~iy 330 (331)
T PF07995_consen 327 GKIY 330 (331)
T ss_dssp TTEE
T ss_pred CeEe
Confidence 8764
No 378
>PF14783 BBS2_Mid: Ciliary BBSome complex subunit 2, middle region
Probab=97.35 E-value=0.0091 Score=49.34 Aligned_cols=96 Identities=24% Similarity=0.373 Sum_probs=70.7
Q ss_pred CCCCCCEEEEEeCCCeEEEEeCCCCceEEEEcCCCCCEEEEEEcCCCCEEEEEeCCCeEEEEEeeCCeEEEEEeccCCCc
Q 003579 147 PDTYLNKVIVGSQEGSLQLWNISTKKKLYEFKGWGSSISSCVSSPALDVVAVGCSDGKIHVHNVRYDEELVTFTHSMRGA 226 (809)
Q Consensus 147 p~~~~~~l~~~~~dg~i~lwd~~~~~~~~~~~~~~~~I~~l~~sp~~~~la~g~~dg~i~iwd~~~~~~~~~~~~~~~~~ 226 (809)
-++. +.|++|+.|..|++|+ ..+.+.++.. .+.|++++-... ..++.|..+|+|-+|+- .+.+-..+. +..
T Consensus 12 ~dg~-~eLlvGs~D~~IRvf~--~~e~~~Ei~e-~~~v~~L~~~~~-~~F~Y~l~NGTVGvY~~--~~RlWRiKS--K~~ 82 (111)
T PF14783_consen 12 GDGE-NELLVGSDDFEIRVFK--GDEIVAEITE-TDKVTSLCSLGG-GRFAYALANGTVGVYDR--SQRLWRIKS--KNQ 82 (111)
T ss_pred CCCc-ceEEEecCCcEEEEEe--CCcEEEEEec-ccceEEEEEcCC-CEEEEEecCCEEEEEeC--cceeeeecc--CCC
Confidence 3443 7899999999999997 5578888876 567888887776 57999999999999974 334444443 344
Q ss_pred EEEEEEe---cCCCCEEEEEcCCCcEEE
Q 003579 227 VTALAFS---SDGQPLLASGASSGVISI 251 (809)
Q Consensus 227 V~~l~fs---~dg~~~lasg~~dg~I~i 251 (809)
+.++.+. .||..-|++|-.+|.|-+
T Consensus 83 ~~~~~~~D~~gdG~~eLI~GwsnGkve~ 110 (111)
T PF14783_consen 83 VTSMAFYDINGDGVPELIVGWSNGKVEV 110 (111)
T ss_pred eEEEEEEcCCCCCceEEEEEecCCeEEe
Confidence 6666554 456667999999998753
No 379
>PF14783 BBS2_Mid: Ciliary BBSome complex subunit 2, middle region
Probab=97.35 E-value=0.016 Score=47.89 Aligned_cols=101 Identities=21% Similarity=0.314 Sum_probs=71.2
Q ss_pred EEEEEEe---cCCCCEEEEEcCCCcEEEEECCCceeeeeeecccccceEEEEEecCCCEEEEEcCCCcEEEEEeeCCCCC
Q 003579 227 VTALAFS---SDGQPLLASGASSGVISIWNLEKRRLQSVIREAHDNAIISLHFFANEPVLMSASADNSIKMWIFDTTDGD 303 (809)
Q Consensus 227 V~~l~fs---~dg~~~lasg~~dg~I~iwdl~~~~~~~~~~~~h~~~V~~l~~~~~~~~l~s~s~d~~i~vw~~~~~~~~ 303 (809)
|++|++. .||..-|++|+.|..|++|+- ...+..+. -.+.|+++.-... ..++.+-.+|+|-+|+- ..
T Consensus 2 V~al~~~d~d~dg~~eLlvGs~D~~IRvf~~--~e~~~Ei~--e~~~v~~L~~~~~-~~F~Y~l~NGTVGvY~~--~~-- 72 (111)
T PF14783_consen 2 VTALCLFDFDGDGENELLVGSDDFEIRVFKG--DEIVAEIT--ETDKVTSLCSLGG-GRFAYALANGTVGVYDR--SQ-- 72 (111)
T ss_pred eeEEEEEecCCCCcceEEEecCCcEEEEEeC--CcEEEEEe--cccceEEEEEcCC-CEEEEEecCCEEEEEeC--cc--
Confidence 5566654 466678999999999999984 46666665 5567888888776 57888999999999953 22
Q ss_pred ceeEEeccCCCCCCeeEEEec---CC-CEEEEEECCCCEE
Q 003579 304 PRLLRFRSGHSAPPLCIRFYA---NG-RHILSAGQDRAFR 339 (809)
Q Consensus 304 ~~~~~~~~~h~~~v~~i~~~~---~~-~~l~s~~~dg~i~ 339 (809)
++.+....| .+.++.+.. || ..|++|-.+|.|-
T Consensus 73 -RlWRiKSK~--~~~~~~~~D~~gdG~~eLI~GwsnGkve 109 (111)
T PF14783_consen 73 -RLWRIKSKN--QVTSMAFYDINGDGVPELIVGWSNGKVE 109 (111)
T ss_pred -eeeeeccCC--CeEEEEEEcCCCCCceEEEEEecCCeEE
Confidence 444443333 377777765 22 3688888888763
No 380
>PRK13616 lipoprotein LpqB; Provisional
Probab=97.27 E-value=0.048 Score=61.15 Aligned_cols=176 Identities=14% Similarity=0.087 Sum_probs=98.3
Q ss_pred CCeEEEEeCCCCceEEEEcCCCCCEEEEEEcCCCCEEEEEe------CCCeEEEEEeeCCeEEEEEeccCCCcEEEEEEe
Q 003579 160 EGSLQLWNISTKKKLYEFKGWGSSISSCVSSPALDVVAVGC------SDGKIHVHNVRYDEELVTFTHSMRGAVTALAFS 233 (809)
Q Consensus 160 dg~i~lwd~~~~~~~~~~~~~~~~I~~l~~sp~~~~la~g~------~dg~i~iwd~~~~~~~~~~~~~~~~~V~~l~fs 233 (809)
+|.+.-.+-.....+.-..+....+.+.+++|+|+.+|... .|+.-.||=...+.....+... ...+.-.|+
T Consensus 328 ~G~l~~~~~~~~~pv~g~~g~~~~vsspaiSpdG~~vA~v~~~~~~~~d~~s~Lwv~~~gg~~~~lt~g--~~~t~PsWs 405 (591)
T PRK13616 328 DGSLVSVDGQGVTPVPGAFGQMGNITSAALSRSGRQVAAVVTLGRGAPDPASSLWVGPLGGVAVQVLEG--HSLTRPSWS 405 (591)
T ss_pred CCeEEEecCCCeeeCCCccccccCcccceECCCCCEEEEEEeecCCCCCcceEEEEEeCCCcceeeecC--CCCCCceEC
Confidence 66665544322222222223335678999999999888765 2443344443333333444433 248889999
Q ss_pred cCCCCEEEEEcC------------CCcEEEEECCCceeeeeeecccccceEEEEEecCCCEEEEEcCCCcEEEEEeeC-C
Q 003579 234 SDGQPLLASGAS------------SGVISIWNLEKRRLQSVIREAHDNAIISLHFFANEPVLMSASADNSIKMWIFDT-T 300 (809)
Q Consensus 234 ~dg~~~lasg~~------------dg~I~iwdl~~~~~~~~~~~~h~~~V~~l~~~~~~~~l~s~s~d~~i~vw~~~~-~ 300 (809)
|||. .+++... .+.+.+.++..+.... ...+.|..+.|+|||..++... ++.|.+=-+.. .
T Consensus 406 pDG~-~lw~v~dg~~~~~v~~~~~~gql~~~~vd~ge~~~----~~~g~Issl~wSpDG~RiA~i~-~g~v~Va~Vvr~~ 479 (591)
T PRK13616 406 LDAD-AVWVVVDGNTVVRVIRDPATGQLARTPVDASAVAS----RVPGPISELQLSRDGVRAAMII-GGKVYLAVVEQTE 479 (591)
T ss_pred CCCC-ceEEEecCcceEEEeccCCCceEEEEeccCchhhh----ccCCCcCeEEECCCCCEEEEEE-CCEEEEEEEEeCC
Confidence 9987 4544432 2334333444433322 2346799999999999887766 46665533332 3
Q ss_pred CCCceeE---EeccCCCCCCeeEEEecCCCEEEEEECCCCEEEEEee
Q 003579 301 DGDPRLL---RFRSGHSAPPLCIRFYANGRHILSAGQDRAFRLFSVI 344 (809)
Q Consensus 301 ~~~~~~~---~~~~~h~~~v~~i~~~~~~~~l~s~~~dg~i~~wd~~ 344 (809)
.+..++. ....+-...+..+.|.+++.. +++..++.-.+|.+.
T Consensus 480 ~G~~~l~~~~~l~~~l~~~~~~l~W~~~~~L-~V~~~~~~~~v~~v~ 525 (591)
T PRK13616 480 DGQYALTNPREVGPGLGDTAVSLDWRTGDSL-VVGRSDPEHPVWYVN 525 (591)
T ss_pred CCceeecccEEeecccCCccccceEecCCEE-EEEecCCCCceEEEe
Confidence 3332221 111233344688999998874 455555544555544
No 381
>TIGR03074 PQQ_membr_DH membrane-bound PQQ-dependent dehydrogenase, glucose/quinate/shikimate family. This protein family has a phylogenetic distribution very similar to that coenzyme PQQ biosynthesis enzymes, as shown by partial phylogenetic profiling. Members of this family have several predicted transmembrane helices in the N-terminal region, and include the quinoprotein glucose dehydrogenase (EC 1.1.5.2) of Escherichia coli and the quinate/shikimate dehydrogenase of Acinetobacter sp. ADP1 (EC 1.1.99.25). Sequences closely related except for the absense of the N-terminal hydrophobic region, scoring in the gray zone between the trusted and noise cutoffs, include PQQ-dependent glycerol (EC 1.1.99.22) and and other polyol (sugar alcohol) dehydrogenases.
Probab=97.25 E-value=0.64 Score=53.83 Aligned_cols=116 Identities=15% Similarity=0.162 Sum_probs=73.5
Q ss_pred eCCEEEEEeCCCcEEEEEcCCCccccceeeeEEcCCcc--------ccEEEEe--------------CCCCCCEEEEEeC
Q 003579 102 FGEHILSIDIDGNMFIWAFKGIEENLAPVGHVKLDDKF--------TPTCIMH--------------PDTYLNKVIVGSQ 159 (809)
Q Consensus 102 ~g~~l~s~~~dg~i~vWd~~~~~~~~~~~~~~~~~~~~--------~~~~~~~--------------p~~~~~~l~~~~~ 159 (809)
.++.|+.++.++.|.-.|..+++.. -++...... .....+. |...-++|++++.
T Consensus 193 vgg~lYv~t~~~~V~ALDa~TGk~l----W~~d~~~~~~~~~~~~~cRGvay~~~p~~~~~~~~~~~p~~~~~rV~~~T~ 268 (764)
T TIGR03074 193 VGDTLYLCTPHNKVIALDAATGKEK----WKFDPKLKTEAGRQHQTCRGVSYYDAPAAAAGPAAPAAPADCARRIILPTS 268 (764)
T ss_pred ECCEEEEECCCCeEEEEECCCCcEE----EEEcCCCCcccccccccccceEEecCCcccccccccccccccCCEEEEecC
Confidence 4778888888888888888887762 221111100 0011111 1111258999999
Q ss_pred CCeEEEEeCCCCceEEEEcCCCCCEE-------------EEEEcC--CCCEEEEEeC----------CCeEEEEEeeCCe
Q 003579 160 EGSLQLWNISTKKKLYEFKGWGSSIS-------------SCVSSP--ALDVVAVGCS----------DGKIHVHNVRYDE 214 (809)
Q Consensus 160 dg~i~lwd~~~~~~~~~~~~~~~~I~-------------~l~~sp--~~~~la~g~~----------dg~i~iwd~~~~~ 214 (809)
|+.|.-.|.++|+.+..|.. .+.|. .+.-+| .++.+++|+. +|.|+-+|.++|+
T Consensus 269 Dg~LiALDA~TGk~~W~fg~-~G~vdl~~~~g~~~~g~~~~ts~P~V~~g~VIvG~~v~d~~~~~~~~G~I~A~Da~TGk 347 (764)
T TIGR03074 269 DARLIALDADTGKLCEDFGN-NGTVDLTAGMGTTPPGYYYPTSPPLVAGTTVVIGGRVADNYSTDEPSGVIRAFDVNTGA 347 (764)
T ss_pred CCeEEEEECCCCCEEEEecC-CCceeeecccCcCCCcccccccCCEEECCEEEEEecccccccccCCCcEEEEEECCCCc
Confidence 99999999999999988743 22221 112223 2456777743 6899999999999
Q ss_pred EEEEEecc
Q 003579 215 ELVTFTHS 222 (809)
Q Consensus 215 ~~~~~~~~ 222 (809)
.+-.+...
T Consensus 348 l~W~~~~g 355 (764)
T TIGR03074 348 LVWAWDPG 355 (764)
T ss_pred EeeEEecC
Confidence 99888753
No 382
>COG3204 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=97.23 E-value=0.082 Score=51.57 Aligned_cols=121 Identities=11% Similarity=0.132 Sum_probs=87.2
Q ss_pred CCcEEEEEEecCCCCEEEEEcCCCcEEEEECCCceeeeeeecccccceEEEEEecCCCEEEEEcCCCcEEEEEeeCCCCC
Q 003579 224 RGAVTALAFSSDGQPLLASGASSGVISIWNLEKRRLQSVIREAHDNAIISLHFFANEPVLMSASADNSIKMWIFDTTDGD 303 (809)
Q Consensus 224 ~~~V~~l~fs~dg~~~lasg~~dg~I~iwdl~~~~~~~~~~~~h~~~V~~l~~~~~~~~l~s~s~d~~i~vw~~~~~~~~ 303 (809)
...+.++.|+|+.+ .|.+......-.++=-.+|.++.++...--...-.+.|..++.+.++--.++.+.++.++..+..
T Consensus 85 ~~nvS~LTynp~~r-tLFav~n~p~~iVElt~~GdlirtiPL~g~~DpE~Ieyig~n~fvi~dER~~~l~~~~vd~~t~~ 163 (316)
T COG3204 85 TANVSSLTYNPDTR-TLFAVTNKPAAIVELTKEGDLIRTIPLTGFSDPETIEYIGGNQFVIVDERDRALYLFTVDADTTV 163 (316)
T ss_pred cccccceeeCCCcc-eEEEecCCCceEEEEecCCceEEEecccccCChhHeEEecCCEEEEEehhcceEEEEEEcCCccE
Confidence 34599999999999 44444555555566666788888887444455678899989988888888999999988766422
Q ss_pred cee------EEeccCCCCCCeeEEEecCCCEEEEEECCCCEEEEEeee
Q 003579 304 PRL------LRFRSGHSAPPLCIRFYANGRHILSAGQDRAFRLFSVIQ 345 (809)
Q Consensus 304 ~~~------~~~~~~h~~~v~~i~~~~~~~~l~s~~~dg~i~~wd~~~ 345 (809)
... +..........-.++|.|..+.|+.+-+-.-+.+|.+..
T Consensus 164 ~~~~~~~i~L~~~~k~N~GfEGlA~d~~~~~l~~aKEr~P~~I~~~~~ 211 (316)
T COG3204 164 ISAKVQKIPLGTTNKKNKGFEGLAWDPVDHRLFVAKERNPIGIFEVTQ 211 (316)
T ss_pred EeccceEEeccccCCCCcCceeeecCCCCceEEEEEccCCcEEEEEec
Confidence 111 111112255678899999888999998888899988763
No 383
>COG3386 Gluconolactonase [Carbohydrate transport and metabolism]
Probab=97.22 E-value=0.14 Score=52.23 Aligned_cols=207 Identities=13% Similarity=0.087 Sum_probs=118.7
Q ss_pred CCCcEEEEEcCCCccccceeeeEEcCCccccEEEEeCCCCCCEEEEEeCCCeEEEEeCCCCceEEEEcC----C-CCCEE
Q 003579 111 IDGNMFIWAFKGIEENLAPVGHVKLDDKFTPTCIMHPDTYLNKVIVGSQEGSLQLWNISTKKKLYEFKG----W-GSSIS 185 (809)
Q Consensus 111 ~dg~i~vWd~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~l~~~~~dg~i~lwd~~~~~~~~~~~~----~-~~~I~ 185 (809)
..+.|.-|+..+++. ..+..+........+...+ .++++..| +.+++.+++..+..+.. . ...-+
T Consensus 45 ~~~~i~r~~~~~g~~-----~~~~~p~~~~~~~~~d~~g----~Lv~~~~g-~~~~~~~~~~~~t~~~~~~~~~~~~r~N 114 (307)
T COG3386 45 LGGRIHRLDPETGKK-----RVFPSPGGFSSGALIDAGG----RLIACEHG-VRLLDPDTGGKITLLAEPEDGLPLNRPN 114 (307)
T ss_pred CCCeEEEecCCcCce-----EEEECCCCcccceeecCCC----eEEEEccc-cEEEeccCCceeEEeccccCCCCcCCCC
Confidence 356677777765543 3444455554455566555 44554555 77888776666333321 1 23455
Q ss_pred EEEEcCCCCEEEEEeC---------CCeEEEEEee-CCeEEEEEeccCCCcEEEEEEecCCCCEEEEEcCCCcEEEEECC
Q 003579 186 SCVSSPALDVVAVGCS---------DGKIHVHNVR-YDEELVTFTHSMRGAVTALAFSSDGQPLLASGASSGVISIWNLE 255 (809)
Q Consensus 186 ~l~~sp~~~~la~g~~---------dg~i~iwd~~-~~~~~~~~~~~~~~~V~~l~fs~dg~~~lasg~~dg~I~iwdl~ 255 (809)
.+...|+|.+.+.... ...-.+|-+. .+..+..+..+ -..-+.|+||||++.+.++=+..+.|.-|++.
T Consensus 115 D~~v~pdG~~wfgt~~~~~~~~~~~~~~G~lyr~~p~g~~~~l~~~~-~~~~NGla~SpDg~tly~aDT~~~~i~r~~~d 193 (307)
T COG3386 115 DGVVDPDGRIWFGDMGYFDLGKSEERPTGSLYRVDPDGGVVRLLDDD-LTIPNGLAFSPDGKTLYVADTPANRIHRYDLD 193 (307)
T ss_pred ceeEcCCCCEEEeCCCccccCccccCCcceEEEEcCCCCEEEeecCc-EEecCceEECCCCCEEEEEeCCCCeEEEEecC
Confidence 6788899876665433 0112455554 44554444432 34567899999998455554566888888876
Q ss_pred C--c----eeeeeeecccccceEEEEEecCCCEEEEEcCCC-cEEEEEeeCCCCCceeEEeccCCCCCCeeEEEec-CCC
Q 003579 256 K--R----RLQSVIREAHDNAIISLHFFANEPVLMSASADN-SIKMWIFDTTDGDPRLLRFRSGHSAPPLCIRFYA-NGR 327 (809)
Q Consensus 256 ~--~----~~~~~~~~~h~~~V~~l~~~~~~~~l~s~s~d~-~i~vw~~~~~~~~~~~~~~~~~h~~~v~~i~~~~-~~~ 327 (809)
. + +........+.+..-.++...+|.+-+++..+| .|..|+.+ . +++....-....+++++|-. +.+
T Consensus 194 ~~~g~~~~~~~~~~~~~~~G~PDG~~vDadG~lw~~a~~~g~~v~~~~pd-G----~l~~~i~lP~~~~t~~~FgG~~~~ 268 (307)
T COG3386 194 PATGPIGGRRGFVDFDEEPGLPDGMAVDADGNLWVAAVWGGGRVVRFNPD-G----KLLGEIKLPVKRPTNPAFGGPDLN 268 (307)
T ss_pred cccCccCCcceEEEccCCCCCCCceEEeCCCCEEEecccCCceEEEECCC-C----cEEEEEECCCCCCccceEeCCCcC
Confidence 2 2 111111112345556677777777665444443 78888554 2 45555555557788888875 445
Q ss_pred EEEEEE
Q 003579 328 HILSAG 333 (809)
Q Consensus 328 ~l~s~~ 333 (809)
.|+..+
T Consensus 269 ~L~iTs 274 (307)
T COG3386 269 TLYITS 274 (307)
T ss_pred EEEEEe
Confidence 555444
No 384
>PRK13616 lipoprotein LpqB; Provisional
Probab=97.20 E-value=0.045 Score=61.39 Aligned_cols=183 Identities=14% Similarity=0.174 Sum_probs=104.4
Q ss_pred cccEEEEeCCCCCCEEEEEe------CCC--eEEEEeCCCCceEEEEcCCCCCEEEEEEcCCCCEEEEEeCC--------
Q 003579 139 FTPTCIMHPDTYLNKVIVGS------QEG--SLQLWNISTKKKLYEFKGWGSSISSCVSSPALDVVAVGCSD-------- 202 (809)
Q Consensus 139 ~~~~~~~~p~~~~~~l~~~~------~dg--~i~lwd~~~~~~~~~~~~~~~~I~~l~~sp~~~~la~g~~d-------- 202 (809)
......++|++ ++++... .++ .|.+++. .+.......+ ...+.-.|+|+|+.|++....
T Consensus 351 ~vsspaiSpdG--~~vA~v~~~~~~~~d~~s~Lwv~~~-gg~~~~lt~g--~~~t~PsWspDG~~lw~v~dg~~~~~v~~ 425 (591)
T PRK13616 351 NITSAALSRSG--RQVAAVVTLGRGAPDPASSLWVGPL-GGVAVQVLEG--HSLTRPSWSLDADAVWVVVDGNTVVRVIR 425 (591)
T ss_pred CcccceECCCC--CEEEEEEeecCCCCCcceEEEEEeC-CCcceeeecC--CCCCCceECCCCCceEEEecCcceEEEec
Confidence 45567799999 6776654 233 4555564 3333222333 348889999999888777532
Q ss_pred ----CeEEEEEeeCCeEEEEEeccCCCcEEEEEEecCCCCEEEEEcCCCcEEE---EECCCceeeee-----eecccccc
Q 003579 203 ----GKIHVHNVRYDEELVTFTHSMRGAVTALAFSSDGQPLLASGASSGVISI---WNLEKRRLQSV-----IREAHDNA 270 (809)
Q Consensus 203 ----g~i~iwd~~~~~~~~~~~~~~~~~V~~l~fs~dg~~~lasg~~dg~I~i---wdl~~~~~~~~-----~~~~h~~~ 270 (809)
+.+.+.++..++... ...+.|..+.|||||..++++. +|.|.+ -....|. ... +..+-...
T Consensus 426 ~~~~gql~~~~vd~ge~~~----~~~g~Issl~wSpDG~RiA~i~--~g~v~Va~Vvr~~~G~-~~l~~~~~l~~~l~~~ 498 (591)
T PRK13616 426 DPATGQLARTPVDASAVAS----RVPGPISELQLSRDGVRAAMII--GGKVYLAVVEQTEDGQ-YALTNPREVGPGLGDT 498 (591)
T ss_pred cCCCceEEEEeccCchhhh----ccCCCcCeEEECCCCCEEEEEE--CCEEEEEEEEeCCCCc-eeecccEEeecccCCc
Confidence 233333333332222 1245799999999999554444 477777 4444453 111 22123344
Q ss_pred eEEEEEecCCCEEEEEcCCCcEEEEEeeCCCCCceeEEeccCCCCCCeeEEEecCCCEEEEEECCCC
Q 003579 271 IISLHFFANEPVLMSASADNSIKMWIFDTTDGDPRLLRFRSGHSAPPLCIRFYANGRHILSAGQDRA 337 (809)
Q Consensus 271 V~~l~~~~~~~~l~s~s~d~~i~vw~~~~~~~~~~~~~~~~~h~~~v~~i~~~~~~~~l~s~~~dg~ 337 (809)
+.++.|..++.++ .+..++.-.+|.++........+ .-.....++..++=+++ .++....++.
T Consensus 499 ~~~l~W~~~~~L~-V~~~~~~~~v~~v~vDG~~~~~~-~~~n~~~~v~~vaa~~~--~iyv~~~~g~ 561 (591)
T PRK13616 499 AVSLDWRTGDSLV-VGRSDPEHPVWYVNLDGSNSDAL-PSRNLSAPVVAVAASPS--TVYVTDARAV 561 (591)
T ss_pred cccceEecCCEEE-EEecCCCCceEEEecCCcccccc-CCCCccCceEEEecCCc--eEEEEcCCce
Confidence 6889999999855 54555556677766554332221 11123566777776653 4555555653
No 385
>KOG2395 consensus Protein involved in vacuole import and degradation [Intracellular trafficking, secretion, and vesicular transport]
Probab=97.13 E-value=0.015 Score=60.68 Aligned_cols=142 Identities=17% Similarity=0.211 Sum_probs=100.8
Q ss_pred CEEE-EEeCCCeEEEEeCCCCceEEEEcCCCCCEEEEEEcCCCC-------EEEEEeCCCeEEEEEeeCCeE-EEEEecc
Q 003579 152 NKVI-VGSQEGSLQLWNISTKKKLYEFKGWGSSISSCVSSPALD-------VVAVGCSDGKIHVHNVRYDEE-LVTFTHS 222 (809)
Q Consensus 152 ~~l~-~~~~dg~i~lwd~~~~~~~~~~~~~~~~I~~l~~sp~~~-------~la~g~~dg~i~iwd~~~~~~-~~~~~~~ 222 (809)
+.|+ .+.....++-.|++.|+.+.+.+-+.. |+-+.+.|+.+ .-++|-.|..|.-||.+-... .....+.
T Consensus 346 nlil~~~~~~~~l~klDIE~GKIVeEWk~~~d-i~mv~~t~d~K~~Ql~~e~TlvGLs~n~vfriDpRv~~~~kl~~~q~ 424 (644)
T KOG2395|consen 346 NLILMDGGEQDKLYKLDIERGKIVEEWKFEDD-INMVDITPDFKFAQLTSEQTLVGLSDNSVFRIDPRVQGKNKLAVVQS 424 (644)
T ss_pred ceEeeCCCCcCcceeeecccceeeeEeeccCC-cceeeccCCcchhcccccccEEeecCCceEEecccccCcceeeeeec
Confidence 3343 455667799999999999999988766 77788888653 235677889999999873322 2222221
Q ss_pred C----CCcEEEEEEecCCCCEEEEEcCCCcEEEEECCCceeeeeeecccccceEEEEEecCCCEEEEEcCCCcEEEEEee
Q 003579 223 M----RGAVTALAFSSDGQPLLASGASSGVISIWNLEKRRLQSVIREAHDNAIISLHFFANEPVLMSASADNSIKMWIFD 298 (809)
Q Consensus 223 ~----~~~V~~l~fs~dg~~~lasg~~dg~I~iwdl~~~~~~~~~~~~h~~~V~~l~~~~~~~~l~s~s~d~~i~vw~~~ 298 (809)
+ .....|.+-..+| ++|+|+.+|.|++||- .++...+...+-..+|..+..+.+|++++..+ +..+.+-+..
T Consensus 425 kqy~~k~nFsc~aTT~sG--~IvvgS~~GdIRLYdr-i~~~AKTAlPgLG~~I~hVdvtadGKwil~Tc-~tyLlLi~t~ 500 (644)
T KOG2395|consen 425 KQYSTKNNFSCFATTESG--YIVVGSLKGDIRLYDR-IGRRAKTALPGLGDAIKHVDVTADGKWILATC-KTYLLLIDTL 500 (644)
T ss_pred cccccccccceeeecCCc--eEEEeecCCcEEeehh-hhhhhhhcccccCCceeeEEeeccCcEEEEec-ccEEEEEEEe
Confidence 1 2355666666666 6999999999999997 55544444448889999999999999887665 4556555543
No 386
>smart00320 WD40 WD40 repeats. Note that these repeats are permuted with respect to the structural repeats (blades) of the beta propeller domain.
Probab=97.02 E-value=0.002 Score=42.05 Aligned_cols=39 Identities=26% Similarity=0.365 Sum_probs=35.0
Q ss_pred CceEEEEcCCCCCEEEEEEcCCCCEEEEEeCCCeEEEEE
Q 003579 171 KKKLYEFKGWGSSISSCVSSPALDVVAVGCSDGKIHVHN 209 (809)
Q Consensus 171 ~~~~~~~~~~~~~I~~l~~sp~~~~la~g~~dg~i~iwd 209 (809)
++++..+..|...|.++.|.+.+.++++++.|+.+++|+
T Consensus 2 ~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~d~~~~~~~ 40 (40)
T smart00320 2 GELLKTLKGHTGPVTSVAFSPDGKYLASASDDGTIKLWD 40 (40)
T ss_pred cEEEEEEEecCCceeEEEECCCCCEEEEecCCCeEEEcC
Confidence 456777888999999999999999999999999999996
No 387
>PF05096 Glu_cyclase_2: Glutamine cyclotransferase; InterPro: IPR007788 This family of enzymes 2.3.2.5 from EC catalyse the cyclization of free L-glutamine and N-terminal glutaminyl residues in proteins to pyroglutamate (5-oxoproline) and pyroglutamyl residues respectively []. This family includes plant and bacterial enzymes and seems unrelated to the mammalian enzymes.; PDB: 3NOK_B 2FAW_A 2IWA_A 3NOM_A 3NOL_A 3MBR_X.
Probab=97.00 E-value=0.4 Score=46.95 Aligned_cols=183 Identities=12% Similarity=0.057 Sum_probs=124.2
Q ss_pred CCeEEEEEcCCCCEEEEEeCCC--cEEEEECCCCceeeeeeCcccccccCccccEEEEEEcCCCCEEEEEeCcCeEEEEE
Q 003579 425 TAVKACTISACGNFAVLGTAGG--WIERFNLQSGISRGSYLDMSERSNYAHNGEVVGVACDSTNTLMISAGYHGDIKVWD 502 (809)
Q Consensus 425 ~~v~~v~~s~~g~~l~~g~~~g--~i~i~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~l~s~~~dg~i~iwd 502 (809)
.....+.+..+|.++-+.+.-| .|+.+|+.+|+....... ....--.+++... ++...-.-.++...+||
T Consensus 45 aFTQGL~~~~~g~LyESTG~yG~S~l~~~d~~tg~~~~~~~l-------~~~~FgEGit~~~-d~l~qLTWk~~~~f~yd 116 (264)
T PF05096_consen 45 AFTQGLEFLDDGTLYESTGLYGQSSLRKVDLETGKVLQSVPL-------PPRYFGEGITILG-DKLYQLTWKEGTGFVYD 116 (264)
T ss_dssp -EEEEEEEEETTEEEEEECSTTEEEEEEEETTTSSEEEEEE--------TTT--EEEEEEET-TEEEEEESSSSEEEEEE
T ss_pred ccCccEEecCCCEEEEeCCCCCcEEEEEEECCCCcEEEEEEC-------CccccceeEEEEC-CEEEEEEecCCeEEEEc
Confidence 4455677777788777777766 889999999987766542 2222334555543 34445556789999999
Q ss_pred CCCCceeeeeecCCCeEEEEEeeCCCEEEEEeCCCeEEEEEcCCCeEEEEEecC-----CCCeeeEEECCCCCEEEEEeC
Q 003579 503 FKGRDLKSRWEVGCSLVKIVYHRVNGLLATVADDLVIRLFDVVALRMVRKFEGH-----TDRITDFCFSEDGKWLLSSGM 577 (809)
Q Consensus 503 ~~~~~~~~~~~~~~~i~~~~~s~~~~~la~~~~d~~I~v~d~~~~~~~~~~~~h-----~~~I~~l~fspdg~~l~s~s~ 577 (809)
..+.+.+.++.....=+.++ .|++.|+.......++++|.++.+..+++.-. -..++-+.+- +|...|=.=.
T Consensus 117 ~~tl~~~~~~~y~~EGWGLt--~dg~~Li~SDGS~~L~~~dP~~f~~~~~i~V~~~g~pv~~LNELE~i-~G~IyANVW~ 193 (264)
T PF05096_consen 117 PNTLKKIGTFPYPGEGWGLT--SDGKRLIMSDGSSRLYFLDPETFKEVRTIQVTDNGRPVSNLNELEYI-NGKIYANVWQ 193 (264)
T ss_dssp TTTTEEEEEEE-SSS--EEE--ECSSCEEEE-SSSEEEEE-TTT-SEEEEEE-EETTEE---EEEEEEE-TTEEEEEETT
T ss_pred cccceEEEEEecCCcceEEE--cCCCEEEEECCccceEEECCcccceEEEEEEEECCEECCCcEeEEEE-cCEEEEEeCC
Confidence 99999999998887777777 56788888878889999999988877776532 2346777876 6766665656
Q ss_pred CCeEEEEEcCCccEEEEeee----------------CcceEEEEEcCCCCeEEEEEe
Q 003579 578 DGSLRIWDVILARQIDAIHV----------------DVSITALSLSPNMDVLATAHV 618 (809)
Q Consensus 578 D~~I~vwd~~~~~~i~~~~~----------------~~~v~~l~~spdg~~lat~~~ 618 (809)
...|..-|..+|+.+..+.. ..-.+.+|+.|..+.|..++.
T Consensus 194 td~I~~Idp~tG~V~~~iDls~L~~~~~~~~~~~~~~dVLNGIAyd~~~~~l~vTGK 250 (264)
T PF05096_consen 194 TDRIVRIDPETGKVVGWIDLSGLRPEVGRDKSRQPDDDVLNGIAYDPETDRLFVTGK 250 (264)
T ss_dssp SSEEEEEETTT-BEEEEEE-HHHHHHHTSTTST--TTS-EEEEEEETTTTEEEEEET
T ss_pred CCeEEEEeCCCCeEEEEEEhhHhhhcccccccccccCCeeEeEeEeCCCCEEEEEeC
Confidence 67788899999999887742 123889999987776666554
No 388
>KOG2444 consensus WD40 repeat protein [General function prediction only]
Probab=96.93 E-value=0.0012 Score=61.47 Aligned_cols=143 Identities=18% Similarity=0.187 Sum_probs=86.9
Q ss_pred EEEEeCCCeEEEEeCCCCceEEEE-cCCCCCEEEEEEcCCCCEEEEEeCCCeEEEEEeeCCeEEEEEeccCCCcEEEEEE
Q 003579 154 VIVGSQEGSLQLWNISTKKKLYEF-KGWGSSISSCVSSPALDVVAVGCSDGKIHVHNVRYDEELVTFTHSMRGAVTALAF 232 (809)
Q Consensus 154 l~~~~~dg~i~lwd~~~~~~~~~~-~~~~~~I~~l~~sp~~~~la~g~~dg~i~iwd~~~~~~~~~~~~~~~~~V~~l~f 232 (809)
+..-+.+|.|.-++++..+.-..- .-|... ......+.-|++|+.+|.|.+|+..-..............|.++--
T Consensus 33 l~~~sa~~~v~~~~~~k~k~s~rse~~~~e~---~~v~~~~~~~~vG~~dg~v~~~n~n~~g~~~d~~~s~~e~i~~~Ip 109 (238)
T KOG2444|consen 33 LRATSADGLVRERKVRKHKESCRSERFIDEG---QRVVTASAKLMVGTSDGAVYVFNWNLEGAHSDRVCSGEESIDLGIP 109 (238)
T ss_pred hccccCCcccccchhhhhhhhhhhhhhhhcc---eeecccCceEEeecccceEEEecCCccchHHHhhhcccccceeccc
Confidence 444557777777776544332211 111111 1222335679999999999999986222211111111233433332
Q ss_pred ecCCCCEEEEEcCCCcEEEEECCCceeeeeeecccc-cceEEEEEecCCCEEEEE--cCCCcEEEEEeeCC
Q 003579 233 SSDGQPLLASGASSGVISIWNLEKRRLQSVIREAHD-NAIISLHFFANEPVLMSA--SADNSIKMWIFDTT 300 (809)
Q Consensus 233 s~dg~~~lasg~~dg~I~iwdl~~~~~~~~~~~~h~-~~V~~l~~~~~~~~l~s~--s~d~~i~vw~~~~~ 300 (809)
..+...+..+++.+|.|+.|++.-.+.+...- .|. .++..+..+..+..++.+ |.|..++.|++..-
T Consensus 110 ~~~~~~~~c~~~~dg~ir~~n~~p~k~~g~~g-~h~~~~~e~~ivv~sd~~i~~a~~S~d~~~k~W~ve~~ 179 (238)
T KOG2444|consen 110 NGRDSSLGCVGAQDGRIRACNIKPNKVLGYVG-QHNFESGEELIVVGSDEFLKIADTSHDRVLKKWNVEKI 179 (238)
T ss_pred cccccceeEEeccCCceeeeccccCceeeeec-cccCCCcceeEEecCCceEEeeccccchhhhhcchhhh
Confidence 22222288899999999999999888887776 676 566666666666677777 77778888876543
No 389
>PF14655 RAB3GAP2_N: Rab3 GTPase-activating protein regulatory subunit N-terminus
Probab=96.89 E-value=0.037 Score=58.41 Aligned_cols=89 Identities=12% Similarity=0.145 Sum_probs=62.7
Q ss_pred EEcCCCCCEEEEEEcCCCCEEEEEeCCCeEEEEEeeCCeEEEEEeccCCCcEEEEEEecC-----------------CCC
Q 003579 176 EFKGWGSSISSCVSSPALDVVAVGCSDGKIHVHNVRYDEELVTFTHSMRGAVTALAFSSD-----------------GQP 238 (809)
Q Consensus 176 ~~~~~~~~I~~l~~sp~~~~la~g~~dg~i~iwd~~~~~~~~~~~~~~~~~V~~l~fs~d-----------------g~~ 238 (809)
.+......+.+++.+|.+++.|+...=|+|.++|+.++..++.+++-....+.-+.-... ...
T Consensus 302 ~l~D~~R~~~~i~~sP~~~laA~tDslGRV~LiD~~~~~vvrmWKGYRdAqc~wi~~~~~~~~~~~~~~~~~~~~~~~l~ 381 (415)
T PF14655_consen 302 GLPDSKREGESICLSPSGRLAAVTDSLGRVLLIDVARGIVVRMWKGYRDAQCGWIEVPEEGDRDRSNSNSPKSSSRFALF 381 (415)
T ss_pred eeccCCceEEEEEECCCCCEEEEEcCCCcEEEEECCCChhhhhhccCccceEEEEEeecccccccccccccCCCCcceEE
Confidence 344556778999999999988888777999999999998888877643332222222111 112
Q ss_pred EEEEEcCCCcEEEEECCCceeeeeee
Q 003579 239 LLASGASSGVISIWNLEKRRLQSVIR 264 (809)
Q Consensus 239 ~lasg~~dg~I~iwdl~~~~~~~~~~ 264 (809)
+++-+-.-|.|.||++++|..+..+.
T Consensus 382 LvIyaprRg~lEvW~~~~g~Rv~a~~ 407 (415)
T PF14655_consen 382 LVIYAPRRGILEVWSMRQGPRVAAFN 407 (415)
T ss_pred EEEEeccCCeEEEEecCCCCEEEEEE
Confidence 34455678999999998887776665
No 390
>COG3204 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=96.85 E-value=0.28 Score=48.02 Aligned_cols=164 Identities=9% Similarity=0.093 Sum_probs=112.0
Q ss_pred cCCCCCEEEEEEcCCCCEEEEEeCCCeEEEEEeeCCeEEEEEeccCCCcEEEEEEecCCCCEEEEEcCCCcEEEEECCCc
Q 003579 178 KGWGSSISSCVSSPALDVVAVGCSDGKIHVHNVRYDEELVTFTHSMRGAVTALAFSSDGQPLLASGASSGVISIWNLEKR 257 (809)
Q Consensus 178 ~~~~~~I~~l~~sp~~~~la~g~~dg~i~iwd~~~~~~~~~~~~~~~~~V~~l~fs~dg~~~lasg~~dg~I~iwdl~~~ 257 (809)
.+-...++++.|+|+.+.|.+......-.|+=...|+.+.++....-.....+.+..+|+ ++++--.++.+.++.+...
T Consensus 82 ~g~~~nvS~LTynp~~rtLFav~n~p~~iVElt~~GdlirtiPL~g~~DpE~Ieyig~n~-fvi~dER~~~l~~~~vd~~ 160 (316)
T COG3204 82 LGETANVSSLTYNPDTRTLFAVTNKPAAIVELTKEGDLIRTIPLTGFSDPETIEYIGGNQ-FVIVDERDRALYLFTVDAD 160 (316)
T ss_pred ccccccccceeeCCCcceEEEecCCCceEEEEecCCceEEEecccccCChhHeEEecCCE-EEEEehhcceEEEEEEcCC
Confidence 344566999999999999988888888888877889999998865445667888888887 6666668888988877665
Q ss_pred eeeeeee--------ccc-ccceEEEEEecCCCEEEEEcCCCcEEEEEeeCCCCCceeEEeccCC-------CCCCeeEE
Q 003579 258 RLQSVIR--------EAH-DNAIISLHFFANEPVLMSASADNSIKMWIFDTTDGDPRLLRFRSGH-------SAPPLCIR 321 (809)
Q Consensus 258 ~~~~~~~--------~~h-~~~V~~l~~~~~~~~l~s~s~d~~i~vw~~~~~~~~~~~~~~~~~h-------~~~v~~i~ 321 (809)
..+.... ..+ +.+.-.++|.|.+..|+.+-.-+-++++.++..... -.......+ -..+.++.
T Consensus 161 t~~~~~~~~~i~L~~~~k~N~GfEGlA~d~~~~~l~~aKEr~P~~I~~~~~~~~~-l~~~~~~~~~~~~~~f~~DvSgl~ 239 (316)
T COG3204 161 TTVISAKVQKIPLGTTNKKNKGFEGLAWDPVDHRLFVAKERNPIGIFEVTQSPSS-LSVHASLDPTADRDLFVLDVSGLE 239 (316)
T ss_pred ccEEeccceEEeccccCCCCcCceeeecCCCCceEEEEEccCCcEEEEEecCCcc-cccccccCcccccceEeeccccce
Confidence 2221111 122 567889999999999999888888888877643211 111111111 23467778
Q ss_pred Eec-CCCEEEEEECCCCEEEEEe
Q 003579 322 FYA-NGRHILSAGQDRAFRLFSV 343 (809)
Q Consensus 322 ~~~-~~~~l~s~~~dg~i~~wd~ 343 (809)
|++ .+..++-+.+++.+.-.|.
T Consensus 240 ~~~~~~~LLVLS~ESr~l~Evd~ 262 (316)
T COG3204 240 FNAITNSLLVLSDESRRLLEVDL 262 (316)
T ss_pred ecCCCCcEEEEecCCceEEEEec
Confidence 887 4445555555665555554
No 391
>COG3490 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=96.84 E-value=0.52 Score=45.75 Aligned_cols=155 Identities=16% Similarity=0.116 Sum_probs=86.4
Q ss_pred CCeEEEEEcCCCCEEEEEeCCCcEEEE--------ECCCCceeeeeeCcc-c-----cccc--CccccEEEEEEcCCCCE
Q 003579 425 TAVKACTISACGNFAVLGTAGGWIERF--------NLQSGISRGSYLDMS-E-----RSNY--AHNGEVVGVACDSTNTL 488 (809)
Q Consensus 425 ~~v~~v~~s~~g~~l~~g~~~g~i~i~--------~~~~~~~~~~~~~~~-~-----~~~~--~h~~~v~~l~~~~~~~~ 488 (809)
-....+.+.+||+.++++.. -|..- |+.+.+....+.... . ..+. .+.-+|..++..++|+.
T Consensus 162 iGpHev~lm~DGrtlvvanG--GIethpdfgR~~lNldsMePSlvlld~atG~liekh~Lp~~l~~lSiRHld~g~dgtv 239 (366)
T COG3490 162 IGPHEVTLMADGRTLVVANG--GIETHPDFGRTELNLDSMEPSLVLLDAATGNLIEKHTLPASLRQLSIRHLDIGRDGTV 239 (366)
T ss_pred cCcceeEEecCCcEEEEeCC--ceecccccCccccchhhcCccEEEEeccccchhhhccCchhhhhcceeeeeeCCCCcE
Confidence 44567788899998888643 22222 333332222222100 0 0112 45667999999999987
Q ss_pred EEEEeCcCe-----EEEEECCCCceeeeeecC--------CCeEEEEEeeCCCEEEEEeCC-CeEEEEEcCCCeEEEEEe
Q 003579 489 MISAGYHGD-----IKVWDFKGRDLKSRWEVG--------CSLVKIVYHRVNGLLATVADD-LVIRLFDVVALRMVRKFE 554 (809)
Q Consensus 489 l~s~~~dg~-----i~iwd~~~~~~~~~~~~~--------~~i~~~~~s~~~~~la~~~~d-~~I~v~d~~~~~~~~~~~ 554 (809)
++.+-..|. --+=-...++.+.-+... .-|-+++.+.+..+++..+-. +...+||..++.++..-.
T Consensus 240 wfgcQy~G~~~d~ppLvg~~~~g~~l~~~~~pee~~~~~anYigsiA~n~~~glV~lTSP~GN~~vi~da~tG~vv~~a~ 319 (366)
T COG3490 240 WFGCQYRGPRNDLPPLVGHFRKGEPLEFLDLPEEQTAAFANYIGSIAANRRDGLVALTSPRGNRAVIWDAATGAVVSEAA 319 (366)
T ss_pred EEEEEeeCCCccCCcceeeccCCCcCcccCCCHHHHHHHHhhhhheeecccCCeEEEecCCCCeEEEEEcCCCcEEeccc
Confidence 777654432 112223344444444332 567788888877777766654 566789999998875432
Q ss_pred cCCCCeeeEEECCCCCEEEEEeCCCeEEEEE
Q 003579 555 GHTDRITDFCFSEDGKWLLSSGMDGSLRIWD 585 (809)
Q Consensus 555 ~h~~~I~~l~fspdg~~l~s~s~D~~I~vwd 585 (809)
- .....++- ...-++..+.+|.+..+.
T Consensus 320 l--~daaGva~--~~~gf~vssg~G~~~~~s 346 (366)
T COG3490 320 L--PDAAGVAA--AKGGFAVSSGQGRIIFYS 346 (366)
T ss_pred c--ccccccee--ccCceEEecCCceEEecc
Confidence 1 11222222 222344555677777774
No 392
>PF15390 DUF4613: Domain of unknown function (DUF4613)
Probab=96.83 E-value=0.97 Score=48.70 Aligned_cols=117 Identities=17% Similarity=0.227 Sum_probs=76.4
Q ss_pred cEEEEeCCCCC--CEEEEEeCCCeEEEEeCC-----CCceEEEEcCC---CCC--EEEEEEcCCCCEEEEEeCCCeEEEE
Q 003579 141 PTCIMHPDTYL--NKVIVGSQEGSLQLWNIS-----TKKKLYEFKGW---GSS--ISSCVSSPALDVVAVGCSDGKIHVH 208 (809)
Q Consensus 141 ~~~~~~p~~~~--~~l~~~~~dg~i~lwd~~-----~~~~~~~~~~~---~~~--I~~l~~sp~~~~la~g~~dg~i~iw 208 (809)
..+.|.|.... ..+++.-....|.+|.+. ++|.+.+-..+ .-+ -..+.|+|....|++-.....-.++
T Consensus 60 ~GlsW~P~~~~~~paLLAVQHkkhVtVWqL~~s~~e~~K~l~sQtcEi~e~~pvLpQGCVWHPk~~iL~VLT~~dvSV~~ 139 (671)
T PF15390_consen 60 HGLSWAPPCTADTPALLAVQHKKHVTVWQLCPSTTERNKLLMSQTCEIREPFPVLPQGCVWHPKKAILTVLTARDVSVLP 139 (671)
T ss_pred eeeeecCcccCCCCceEEEeccceEEEEEeccCccccccceeeeeeeccCCcccCCCcccccCCCceEEEEecCceeEee
Confidence 34455554211 245555577889999874 33433332211 111 1357899999999998887777788
Q ss_pred EeeCCeEEEEEeccCCCcEEEEEEecCCCCEEEEEcCCCcEEEEECCCc
Q 003579 209 NVRYDEELVTFTHSMRGAVTALAFSSDGQPLLASGASSGVISIWNLEKR 257 (809)
Q Consensus 209 d~~~~~~~~~~~~~~~~~V~~l~fs~dg~~~lasg~~dg~I~iwdl~~~ 257 (809)
++..+.......-...+-|.|.+|.+||+.++++-+..=.-++||-...
T Consensus 140 sV~~d~srVkaDi~~~G~IhCACWT~DG~RLVVAvGSsLHSyiWd~~qK 188 (671)
T PF15390_consen 140 SVHCDSSRVKADIKTSGLIHCACWTKDGQRLVVAVGSSLHSYIWDSAQK 188 (671)
T ss_pred eeeeCCceEEEeccCCceEEEEEecCcCCEEEEEeCCeEEEEEecCchh
Confidence 8886665544444447899999999999966665555667789985544
No 393
>PF05694 SBP56: 56kDa selenium binding protein (SBP56); InterPro: IPR008826 This family consists of several eukaryotic selenium binding proteins as well as three sequences from archaea. The exact function of this protein is unknown although it is thought that SBP56 participates in late stages of intra-Golgi protein transport []. The Lotus japonicus homologue of SBP56, LjSBP is thought to have more than one physiological role and can be implicated in controlling the oxidation/reduction status of target proteins in vesicular Golgi transport [].; GO: 0008430 selenium binding; PDB: 2ECE_A.
Probab=96.78 E-value=0.27 Score=51.23 Aligned_cols=199 Identities=10% Similarity=0.125 Sum_probs=97.9
Q ss_pred CEEEEEe-CCCeEEEEeCCC----CceEEEEcC---CC----CCEEEEEEcCCCCEEEEEeC------CCeEEEEEeeCC
Q 003579 152 NKVIVGS-QEGSLQLWNIST----KKKLYEFKG---WG----SSISSCVSSPALDVVAVGCS------DGKIHVHNVRYD 213 (809)
Q Consensus 152 ~~l~~~~-~dg~i~lwd~~~----~~~~~~~~~---~~----~~I~~l~~sp~~~~la~g~~------dg~i~iwd~~~~ 213 (809)
++|++.+ ..++|++.|+.+ .++...+.. +. ..-..+-.-|+|+.++++-. -|-+.+.|-++.
T Consensus 88 r~Li~PgL~SsrIyviD~~~dPr~P~l~KvIe~~ev~~k~g~s~PHT~Hclp~G~imIS~lGd~~G~g~Ggf~llD~~tf 167 (461)
T PF05694_consen 88 RYLILPGLRSSRIYVIDTKTDPRKPRLHKVIEPEEVFEKTGLSRPHTVHCLPDGRIMISALGDADGNGPGGFVLLDGETF 167 (461)
T ss_dssp -EEEEEBTTT--EEEEE--S-TTS-EEEEEE-HHHHHHHH-EEEEEEEEE-SS--EEEEEEEETTS-S--EEEEE-TTT-
T ss_pred CcEEeeeeccCcEEEEECCCCCCCCceEeeeCHHHHHhhcCCCCCceeeecCCccEEEEeccCCCCCCCCcEEEEcCccc
Confidence 6777766 678999999873 344555432 11 12233444578888887633 266888888888
Q ss_pred eEEEEEeccC--CCcEEEEEEecCCCCEEEEEcC--------------------CCcEEEEECCCceeeeeeeccccc-c
Q 003579 214 EELVTFTHSM--RGAVTALAFSSDGQPLLASGAS--------------------SGVISIWNLEKRRLQSVIREAHDN-A 270 (809)
Q Consensus 214 ~~~~~~~~~~--~~~V~~l~fs~dg~~~lasg~~--------------------dg~I~iwdl~~~~~~~~~~~~h~~-~ 270 (809)
+......... ..--...-|.|..+ +|+|... ..++.+||+.+.+.++++..+..+ .
T Consensus 168 ~v~g~We~~~~~~~~gYDfw~qpr~n-vMiSSeWg~P~~~~~Gf~~~d~~~~~yG~~l~vWD~~~r~~~Q~idLg~~g~~ 246 (461)
T PF05694_consen 168 EVKGRWEKDRGPQPFGYDFWYQPRHN-VMISSEWGAPSMFEKGFNPEDLEAGKYGHSLHVWDWSTRKLLQTIDLGEEGQM 246 (461)
T ss_dssp -EEEE--SB-TT------EEEETTTT-EEEE-B---HHHHTT---TTTHHHH-S--EEEEEETTTTEEEEEEES-TTEEE
T ss_pred cccceeccCCCCCCCCCCeEEcCCCC-EEEEeccCChhhcccCCChhHhhcccccCeEEEEECCCCcEeeEEecCCCCCc
Confidence 8777776542 22345666777655 7776532 357999999999999999865544 4
Q ss_pred eEEEEEecCC--CE-EEEEcCCCcEEEEEeeCCCCCceeEEec-------------------cCCCCCCeeEEEecCCCE
Q 003579 271 IISLHFFANE--PV-LMSASADNSIKMWIFDTTDGDPRLLRFR-------------------SGHSAPPLCIRFYANGRH 328 (809)
Q Consensus 271 V~~l~~~~~~--~~-l~s~s~d~~i~vw~~~~~~~~~~~~~~~-------------------~~h~~~v~~i~~~~~~~~ 328 (809)
...+.|..+- .+ ++.+.-..+|..|--+ .++.+...+.. ..-..-|+.|..+.|.++
T Consensus 247 pLEvRflH~P~~~~gFvg~aLss~i~~~~k~-~~g~W~a~kVi~ip~~~v~~~~lp~ml~~~~~~P~LitDI~iSlDDrf 325 (461)
T PF05694_consen 247 PLEVRFLHDPDANYGFVGCALSSSIWRFYKD-DDGEWAAEKVIDIPAKKVEGWILPEMLKPFGAVPPLITDILISLDDRF 325 (461)
T ss_dssp EEEEEE-SSTT--EEEEEEE--EEEEEEEE--ETTEEEEEEEEEE--EE--SS---GGGGGG-EE------EEE-TTS-E
T ss_pred eEEEEecCCCCccceEEEEeccceEEEEEEc-CCCCeeeeEEEECCCcccCcccccccccccccCCCceEeEEEccCCCE
Confidence 5678887653 33 3333333444443221 12222211111 111345789999999998
Q ss_pred EEEEE-CCCCEEEEEeeecccceec
Q 003579 329 ILSAG-QDRAFRLFSVIQDQQSREL 352 (809)
Q Consensus 329 l~s~~-~dg~i~~wd~~~~~~~~~~ 352 (809)
|..+. ..|.++.||+......+..
T Consensus 326 LYvs~W~~GdvrqYDISDP~~Pkl~ 350 (461)
T PF05694_consen 326 LYVSNWLHGDVRQYDISDPFNPKLV 350 (461)
T ss_dssp EEEEETTTTEEEEEE-SSTTS-EEE
T ss_pred EEEEcccCCcEEEEecCCCCCCcEE
Confidence 88665 6899999999876655543
No 394
>PF05096 Glu_cyclase_2: Glutamine cyclotransferase; InterPro: IPR007788 This family of enzymes 2.3.2.5 from EC catalyse the cyclization of free L-glutamine and N-terminal glutaminyl residues in proteins to pyroglutamate (5-oxoproline) and pyroglutamyl residues respectively []. This family includes plant and bacterial enzymes and seems unrelated to the mammalian enzymes.; PDB: 3NOK_B 2FAW_A 2IWA_A 3NOM_A 3NOL_A 3MBR_X.
Probab=96.74 E-value=0.66 Score=45.48 Aligned_cols=180 Identities=13% Similarity=0.072 Sum_probs=115.0
Q ss_pred EEEEE-e-CCEEEEEeCCC--cEEEEEcCCCccccceeeeEEcCC-ccccEEEEeCCCCCCEEEEEeCCCeEEEEeCCCC
Q 003579 97 NLLLL-F-GEHILSIDIDG--NMFIWAFKGIEENLAPVGHVKLDD-KFTPTCIMHPDTYLNKVIVGSQEGSLQLWNISTK 171 (809)
Q Consensus 97 ~~l~~-~-g~~l~s~~~dg--~i~vWd~~~~~~~~~~~~~~~~~~-~~~~~~~~~p~~~~~~l~~~~~dg~i~lwd~~~~ 171 (809)
..+.+ + |..+-|.+.-| .|+.+|+.+++. .....++. -+.-.+....+. .....-.++...+||.++.
T Consensus 48 QGL~~~~~g~LyESTG~yG~S~l~~~d~~tg~~----~~~~~l~~~~FgEGit~~~d~---l~qLTWk~~~~f~yd~~tl 120 (264)
T PF05096_consen 48 QGLEFLDDGTLYESTGLYGQSSLRKVDLETGKV----LQSVPLPPRYFGEGITILGDK---LYQLTWKEGTGFVYDPNTL 120 (264)
T ss_dssp EEEEEEETTEEEEEECSTTEEEEEEEETTTSSE----EEEEE-TTT--EEEEEEETTE---EEEEESSSSEEEEEETTTT
T ss_pred ccEEecCCCEEEEeCCCCCcEEEEEEECCCCcE----EEEEECCccccceeEEEECCE---EEEEEecCCeEEEEccccc
Confidence 35666 4 45556666655 599999999987 55555554 333344444332 3334557899999999999
Q ss_pred ceEEEEcCCCCCEEEEEEcCCCCEEEEEeCCCeEEEEEeeCCeEEEEEeccC----CCcEEEEEEecCCCCEEEEEcCCC
Q 003579 172 KKLYEFKGWGSSISSCVSSPALDVVAVGCSDGKIHVHNVRYDEELVTFTHSM----RGAVTALAFSSDGQPLLASGASSG 247 (809)
Q Consensus 172 ~~~~~~~~~~~~I~~l~~sp~~~~la~g~~dg~i~iwd~~~~~~~~~~~~~~----~~~V~~l~fs~dg~~~lasg~~dg 247 (809)
+.+.++.-. +.=..++ .+++.|+.......++.+|.++.+...++.-.. -..++-|.|. +|. +.|=.-...
T Consensus 121 ~~~~~~~y~-~EGWGLt--~dg~~Li~SDGS~~L~~~dP~~f~~~~~i~V~~~g~pv~~LNELE~i-~G~-IyANVW~td 195 (264)
T PF05096_consen 121 KKIGTFPYP-GEGWGLT--SDGKRLIMSDGSSRLYFLDPETFKEVRTIQVTDNGRPVSNLNELEYI-NGK-IYANVWQTD 195 (264)
T ss_dssp EEEEEEE-S-SS--EEE--ECSSCEEEE-SSSEEEEE-TTT-SEEEEEE-EETTEE---EEEEEEE-TTE-EEEEETTSS
T ss_pred eEEEEEecC-CcceEEE--cCCCEEEEECCccceEEECCcccceEEEEEEEECCEECCCcEeEEEE-cCE-EEEEeCCCC
Confidence 999888643 3334455 567778888888899999998887777665321 1356667776 676 677666778
Q ss_pred cEEEEECCCceeeeeeec-----------cc---ccceEEEEEecCCCEEEEEcC
Q 003579 248 VISIWNLEKRRLQSVIRE-----------AH---DNAIISLHFFANEPVLMSASA 288 (809)
Q Consensus 248 ~I~iwdl~~~~~~~~~~~-----------~h---~~~V~~l~~~~~~~~l~s~s~ 288 (809)
.|...|..+|+....+.. .+ ..-.+.++|.|....|...|.
T Consensus 196 ~I~~Idp~tG~V~~~iDls~L~~~~~~~~~~~~~~dVLNGIAyd~~~~~l~vTGK 250 (264)
T PF05096_consen 196 RIVRIDPETGKVVGWIDLSGLRPEVGRDKSRQPDDDVLNGIAYDPETDRLFVTGK 250 (264)
T ss_dssp EEEEEETTT-BEEEEEE-HHHHHHHTSTTST--TTS-EEEEEEETTTTEEEEEET
T ss_pred eEEEEeCCCCeEEEEEEhhHhhhcccccccccccCCeeEeEeEeCCCCEEEEEeC
Confidence 899999999988877641 01 245789999988776555553
No 395
>COG5276 Uncharacterized conserved protein [Function unknown]
Probab=96.72 E-value=0.67 Score=45.29 Aligned_cols=234 Identities=12% Similarity=0.076 Sum_probs=140.3
Q ss_pred CCCcEEEEEeCCeEEEEECCeEEEEECCee------E-EEEccccccEEEEEEeCCEEEEEeCCCcEEEEEcCCCccccc
Q 003579 56 PKKIRALASYRDYTFAAYGNHIAVVKRAHQ------V-ATWSRHSAKVNLLLLFGEHILSIDIDGNMFIWAFKGIEENLA 128 (809)
Q Consensus 56 ~~~I~~la~~~~~~~~a~g~~i~vw~~~~~------~-~~~~~h~~~V~~l~~~g~~l~s~~~dg~i~vWd~~~~~~~~~ 128 (809)
.+.|.+++...++-+++.|..+.+.|.... . ...-.-.+-+..+.+.+++...+..+.-++|.|+.+.+...
T Consensus 42 g~~vsavdv~~~ya~v~qG~~l~i~ditn~~~~t~~~l~~~i~~~~l~~Dv~vse~yvyvad~ssGL~IvDIS~P~sP~- 120 (370)
T COG5276 42 GKGVSAVDVRGAYAYVGQGFILAILDITNVSLQTHDVLLSVINARDLFADVRVSEEYVYVADWSSGLRIVDISTPDSPT- 120 (370)
T ss_pred cCCcccccccccccccccCceEeeccccCcccccCcceEEEEehhhhhheeEecccEEEEEcCCCceEEEeccCCCCcc-
Confidence 388999999999999999999766654221 1 11222334556667789999999988999999999877621
Q ss_pred eeeeEEcCCccccEEEEeCCCCCCEEEEEeCCCeEEEEeCCCCc---eEEEEcCCCCCEEEEEEcCCCCEEEEEeCCCeE
Q 003579 129 PVGHVKLDDKFTPTCIMHPDTYLNKVIVGSQEGSLQLWNISTKK---KLYEFKGWGSSISSCVSSPALDVVAVGCSDGKI 205 (809)
Q Consensus 129 ~~~~~~~~~~~~~~~~~~p~~~~~~l~~~~~dg~i~lwd~~~~~---~~~~~~~~~~~I~~l~~sp~~~~la~g~~dg~i 205 (809)
.+..+... -..-.+.-.+ ++.+++..+.-+.+.|+.+.. +.-.+......-..++.| |++-.++..|+-+
T Consensus 121 ~~~~lnt~---gyaygv~vsG--n~aYVadlddgfLivdvsdpssP~lagrya~~~~d~~~v~IS--Gn~AYvA~~d~GL 193 (370)
T COG5276 121 LIGFLNTD---GYAYGVYVSG--NYAYVADLDDGFLIVDVSDPSSPQLAGRYALPGGDTHDVAIS--GNYAYVAWRDGGL 193 (370)
T ss_pred eeccccCC---ceEEEEEecC--CEEEEeeccCcEEEEECCCCCCceeeeeeccCCCCceeEEEe--cCeEEEEEeCCCe
Confidence 12222211 2234455566 788888866668888887543 333333333333455555 6677788889999
Q ss_pred EEEEeeCCeEEEEEeccC-CCcEEEEEEecCCCCEEEEEcCCCcEEEEECCCceeeeeeecccccceEEE-EEecCCCEE
Q 003579 206 HVHNVRYDEELVTFTHSM-RGAVTALAFSSDGQPLLASGASSGVISIWNLEKRRLQSVIREAHDNAIISL-HFFANEPVL 283 (809)
Q Consensus 206 ~iwd~~~~~~~~~~~~~~-~~~V~~l~fs~dg~~~lasg~~dg~I~iwdl~~~~~~~~~~~~h~~~V~~l-~~~~~~~~l 283 (809)
.|.|+.......-+..-. ...+.++..+++-. +++... --+.+-|..+.+....+-.-....+.++ .+.-.+++.
T Consensus 194 ~ivDVSnp~sPvli~~~n~g~g~~sv~vsdnr~-y~vvy~--egvlivd~s~~ssp~~~gsyet~~p~~~s~v~Vs~~~~ 270 (370)
T COG5276 194 TIVDVSNPHSPVLIGSYNTGPGTYSVSVSDNRA-YLVVYD--EGVLIVDVSGPSSPTVFGSYETSNPVSISTVPVSGEYA 270 (370)
T ss_pred EEEEccCCCCCeEEEEEecCCceEEEEecCCee-EEEEcc--cceEEEecCCCCCceEeeccccCCcccccceeccccee
Confidence 999997654322222111 23788888887755 555443 3466777766653333321122222222 222345566
Q ss_pred EEEcCCCcEEEEEeeCC
Q 003579 284 MSASADNSIKMWIFDTT 300 (809)
Q Consensus 284 ~s~s~d~~i~vw~~~~~ 300 (809)
..+..+.-+.+-++..+
T Consensus 271 Yvadga~gl~~idisnp 287 (370)
T COG5276 271 YVADGAKGLPIIDISNP 287 (370)
T ss_pred eeeccccCceeEeccCC
Confidence 66666666666666544
No 396
>KOG2444 consensus WD40 repeat protein [General function prediction only]
Probab=96.71 E-value=0.0049 Score=57.45 Aligned_cols=104 Identities=17% Similarity=0.205 Sum_probs=71.0
Q ss_pred CCCEEEEEeCcCeEEEEECCCC-ceeeeeecC-CCeEE-EEEeeCCCEEEEEeCCCeEEEEEcCCCeEEEEEecCC-CCe
Q 003579 485 TNTLMISAGYHGDIKVWDFKGR-DLKSRWEVG-CSLVK-IVYHRVNGLLATVADDLVIRLFDVVALRMVRKFEGHT-DRI 560 (809)
Q Consensus 485 ~~~~l~s~~~dg~i~iwd~~~~-~~~~~~~~~-~~i~~-~~~s~~~~~la~~~~d~~I~v~d~~~~~~~~~~~~h~-~~I 560 (809)
-+..++.|+.+|.|.+|....- ......... ..|.+ +.-..++.+..+++.|+.||.|++.-.+.+.....|. .++
T Consensus 69 ~~~~~~vG~~dg~v~~~n~n~~g~~~d~~~s~~e~i~~~Ip~~~~~~~~c~~~~dg~ir~~n~~p~k~~g~~g~h~~~~~ 148 (238)
T KOG2444|consen 69 ASAKLMVGTSDGAVYVFNWNLEGAHSDRVCSGEESIDLGIPNGRDSSLGCVGAQDGRIRACNIKPNKVLGYVGQHNFESG 148 (238)
T ss_pred cCceEEeecccceEEEecCCccchHHHhhhcccccceeccccccccceeEEeccCCceeeeccccCceeeeeccccCCCc
Confidence 3567889999999999987721 111111111 22222 3333456688999999999999999998888887787 566
Q ss_pred eeEEECCCCCEEEEE--eCCCeEEEEEcCC
Q 003579 561 TDFCFSEDGKWLLSS--GMDGSLRIWDVIL 588 (809)
Q Consensus 561 ~~l~fspdg~~l~s~--s~D~~I~vwd~~~ 588 (809)
..+..+..+++|+.+ |.|..++.|++..
T Consensus 149 e~~ivv~sd~~i~~a~~S~d~~~k~W~ve~ 178 (238)
T KOG2444|consen 149 EELIVVGSDEFLKIADTSHDRVLKKWNVEK 178 (238)
T ss_pred ceeEEecCCceEEeeccccchhhhhcchhh
Confidence 666666666667666 6677777777653
No 397
>KOG2395 consensus Protein involved in vacuole import and degradation [Intracellular trafficking, secretion, and vesicular transport]
Probab=96.67 E-value=0.099 Score=54.90 Aligned_cols=137 Identities=10% Similarity=0.205 Sum_probs=99.2
Q ss_pred EEEEEeCcCeEEEEECCCCceeeeeecCCCeEEEEEeeCCC-------EEEEEeCCCeEEEEEcCCC-e-EEEEEecCC-
Q 003579 488 LMISAGYHGDIKVWDFKGRDLKSRWEVGCSLVKIVYHRVNG-------LLATVADDLVIRLFDVVAL-R-MVRKFEGHT- 557 (809)
Q Consensus 488 ~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~i~~~~~s~~~~-------~la~~~~d~~I~v~d~~~~-~-~~~~~~~h~- 557 (809)
++.+++....|+-.|+..|+.+..+..+..|+-+.+.|+.+ .-++|-+|..|.-||.+-. + .+..-++|.
T Consensus 348 il~~~~~~~~l~klDIE~GKIVeEWk~~~di~mv~~t~d~K~~Ql~~e~TlvGLs~n~vfriDpRv~~~~kl~~~q~kqy 427 (644)
T KOG2395|consen 348 ILMDGGEQDKLYKLDIERGKIVEEWKFEDDINMVDITPDFKFAQLTSEQTLVGLSDNSVFRIDPRVQGKNKLAVVQSKQY 427 (644)
T ss_pred EeeCCCCcCcceeeecccceeeeEeeccCCcceeeccCCcchhcccccccEEeecCCceEEecccccCcceeeeeecccc
Confidence 34455566778889999999999999998888888888754 2356778889999998632 2 233334442
Q ss_pred ---CCeeeEEECCCCCEEEEEeCCCeEEEEEcCCccEEEEe-e-eCcceEEEEEcCCCCeEEEEEeCCCeEEEeec
Q 003579 558 ---DRITDFCFSEDGKWLLSSGMDGSLRIWDVILARQIDAI-H-VDVSITALSLSPNMDVLATAHVDQNGVYLWVN 628 (809)
Q Consensus 558 ---~~I~~l~fspdg~~l~s~s~D~~I~vwd~~~~~~i~~~-~-~~~~v~~l~~spdg~~lat~~~d~~~i~lW~~ 628 (809)
..-.|.+-..+| +||.||.+|-||+||- .+...++. . ...+|..+..+.||++|+.++.. .+-|-+.
T Consensus 428 ~~k~nFsc~aTT~sG-~IvvgS~~GdIRLYdr-i~~~AKTAlPgLG~~I~hVdvtadGKwil~Tc~t--yLlLi~t 499 (644)
T KOG2395|consen 428 STKNNFSCFATTESG-YIVVGSLKGDIRLYDR-IGRRAKTALPGLGDAIKHVDVTADGKWILATCKT--YLLLIDT 499 (644)
T ss_pred ccccccceeeecCCc-eEEEeecCCcEEeehh-hhhhhhhcccccCCceeeEEeeccCcEEEEeccc--EEEEEEE
Confidence 335566666666 7999999999999997 45444332 2 35579999999999999888766 3666554
No 398
>KOG2079 consensus Vacuolar assembly/sorting protein VPS8 [Intracellular trafficking, secretion, and vesicular transport]
Probab=96.64 E-value=0.0062 Score=68.79 Aligned_cols=104 Identities=20% Similarity=0.469 Sum_probs=75.5
Q ss_pred CCCCEEEEEeCCCeEEEEEeeCCeEEEEEeccCCCcEEEEEEecCCCCEEEEEcCCCcEEEEECCCceeeeeeecccccc
Q 003579 191 PALDVVAVGCSDGKIHVHNVRYDEELVTFTHSMRGAVTALAFSSDGQPLLASGASSGVISIWNLEKRRLQSVIREAHDNA 270 (809)
Q Consensus 191 p~~~~la~g~~dg~i~iwd~~~~~~~~~~~~~~~~~V~~l~fs~dg~~~lasg~~dg~I~iwdl~~~~~~~~~~~~h~~~ 270 (809)
-.+..+++|+..|.+...|....-.-.....+..++|++++|+.+|. +++.|-.+|.|.+||...++..+.+. .|..+
T Consensus 97 ~~~~~ivi~Ts~ghvl~~d~~~nL~~~~~ne~v~~~Vtsvafn~dg~-~l~~G~~~G~V~v~D~~~~k~l~~i~-e~~ap 174 (1206)
T KOG2079|consen 97 IVVVPIVIGTSHGHVLLSDMTGNLGPLHQNERVQGPVTSVAFNQDGS-LLLAGLGDGHVTVWDMHRAKILKVIT-EHGAP 174 (1206)
T ss_pred eeeeeEEEEcCchhhhhhhhhcccchhhcCCccCCcceeeEecCCCc-eeccccCCCcEEEEEccCCcceeeee-ecCCc
Confidence 34557899999999998887643111122223368999999999999 88889999999999999999988887 56555
Q ss_pred eEEEE---EecCCCEEEEEcCCCcEEEEEee
Q 003579 271 IISLH---FFANEPVLMSASADNSIKMWIFD 298 (809)
Q Consensus 271 V~~l~---~~~~~~~l~s~s~d~~i~vw~~~ 298 (809)
.+++- +..++..++++..-|. +|...
T Consensus 175 ~t~vi~v~~t~~nS~llt~D~~Gs--f~~lv 203 (1206)
T KOG2079|consen 175 VTGVIFVGRTSQNSKLLTSDTGGS--FWKLV 203 (1206)
T ss_pred cceEEEEEEeCCCcEEEEccCCCc--eEEEE
Confidence 55443 3445557777776665 66543
No 399
>PF14870 PSII_BNR: Photosynthesis system II assembly factor YCF48; PDB: 2XBG_A.
Probab=96.53 E-value=1.1 Score=45.50 Aligned_cols=273 Identities=15% Similarity=0.091 Sum_probs=120.2
Q ss_pred CCCCcEEEEEeCCeEEEEECCeEEEEE---CCee--EEEEccc---cccEEEEEEeCCEEEEEeCCCcEEEEEcCCCccc
Q 003579 55 LPKKIRALASYRDYTFAAYGNHIAVVK---RAHQ--VATWSRH---SAKVNLLLLFGEHILSIDIDGNMFIWAFKGIEEN 126 (809)
Q Consensus 55 ~~~~I~~la~~~~~~~~a~g~~i~vw~---~~~~--~~~~~~h---~~~V~~l~~~g~~l~s~~~dg~i~vWd~~~~~~~ 126 (809)
....+..|+|..+..-.+.|..=.+++ -++- ....... .-...+|.+.++....++..+ +.+--.+.++..
T Consensus 15 t~~~l~dV~F~d~~~G~~VG~~g~il~T~DGG~tW~~~~~~~~~~~~~~l~~I~f~~~~g~ivG~~g-~ll~T~DgG~tW 93 (302)
T PF14870_consen 15 TDKPLLDVAFVDPNHGWAVGAYGTILKTTDGGKTWQPVSLDLDNPFDYHLNSISFDGNEGWIVGEPG-LLLHTTDGGKTW 93 (302)
T ss_dssp -SS-EEEEEESSSS-EEEEETTTEEEEESSTTSS-EE-----S-----EEEEEEEETTEEEEEEETT-EEEEESSTTSS-
T ss_pred CCCceEEEEEecCCEEEEEecCCEEEEECCCCccccccccCCCccceeeEEEEEecCCceEEEcCCc-eEEEecCCCCCc
Confidence 456788888875433333444322232 2221 1111111 224667777766665566555 334444444442
Q ss_pred cceeee-EEcCCccccEEEEeCCCCCCEEEEEeCCCeEEEEeCCCCceEEE-EcCCCCCEEEEEEcCCCCEEEEEeCCCe
Q 003579 127 LAPVGH-VKLDDKFTPTCIMHPDTYLNKVIVGSQEGSLQLWNISTKKKLYE-FKGWGSSISSCVSSPALDVVAVGCSDGK 204 (809)
Q Consensus 127 ~~~~~~-~~~~~~~~~~~~~~p~~~~~~l~~~~~dg~i~lwd~~~~~~~~~-~~~~~~~I~~l~~sp~~~~la~g~~dg~ 204 (809)
.. +.. .+.+.......++. + +.+.+++..|.|+.=. +.|+.-.. ...-.+.+..+.-+++|++++++..-..
T Consensus 94 ~~-v~l~~~lpgs~~~i~~l~-~---~~~~l~~~~G~iy~T~-DgG~tW~~~~~~~~gs~~~~~r~~dG~~vavs~~G~~ 167 (302)
T PF14870_consen 94 ER-VPLSSKLPGSPFGITALG-D---GSAELAGDRGAIYRTT-DGGKTWQAVVSETSGSINDITRSSDGRYVAVSSRGNF 167 (302)
T ss_dssp EE-----TT-SS-EEEEEEEE-T---TEEEEEETT--EEEES-STTSSEEEEE-S----EEEEEE-TTS-EEEEETTSSE
T ss_pred EE-eecCCCCCCCeeEEEEcC-C---CcEEEEcCCCcEEEeC-CCCCCeeEcccCCcceeEeEEECCCCcEEEEECcccE
Confidence 11 110 01112222122222 2 2344444555443322 33433222 3344678899999999999999877555
Q ss_pred EEEEEeeCCeEEEEEeccCCCcEEEEEEecCCCCEEEEEcCCCcEEEEEC-CCceeeee--eec-ccccceEEEEEecCC
Q 003579 205 IHVHNVRYDEELVTFTHSMRGAVTALAFSSDGQPLLASGASSGVISIWNL-EKRRLQSV--IRE-AHDNAIISLHFFANE 280 (809)
Q Consensus 205 i~iwd~~~~~~~~~~~~~~~~~V~~l~fs~dg~~~lasg~~dg~I~iwdl-~~~~~~~~--~~~-~h~~~V~~l~~~~~~ 280 (809)
..-||--... -..........|.+|.|+|++. +.+ ....|.|++=+. .....-.. ... ...-.+..++|.+++
T Consensus 168 ~~s~~~G~~~-w~~~~r~~~~riq~~gf~~~~~-lw~-~~~Gg~~~~s~~~~~~~~w~~~~~~~~~~~~~~ld~a~~~~~ 244 (302)
T PF14870_consen 168 YSSWDPGQTT-WQPHNRNSSRRIQSMGFSPDGN-LWM-LARGGQIQFSDDPDDGETWSEPIIPIKTNGYGILDLAYRPPN 244 (302)
T ss_dssp EEEE-TT-SS--EEEE--SSS-EEEEEE-TTS--EEE-EETTTEEEEEE-TTEEEEE---B-TTSS--S-EEEEEESSSS
T ss_pred EEEecCCCcc-ceEEccCccceehhceecCCCC-EEE-EeCCcEEEEccCCCCccccccccCCcccCceeeEEEEecCCC
Confidence 6677643221 2222222257899999999987 434 347888888772 22221111 110 123348899999988
Q ss_pred CEEEEEcCCCcEEEEEeeCCCCCceeEEeccCCCCCCeeEEEecCCCEEEEEECCCCEEEE
Q 003579 281 PVLMSASADNSIKMWIFDTTDGDPRLLRFRSGHSAPPLCIRFYANGRHILSAGQDRAFRLF 341 (809)
Q Consensus 281 ~~l~s~s~d~~i~vw~~~~~~~~~~~~~~~~~h~~~v~~i~~~~~~~~l~s~~~dg~i~~w 341 (809)
...++|+. |.+.+ ..|.. ..++..+....-...++.|.|.++.+ -+..+.+|.|.-|
T Consensus 245 ~~wa~gg~-G~l~~-S~DgG-ktW~~~~~~~~~~~n~~~i~f~~~~~-gf~lG~~G~ll~~ 301 (302)
T PF14870_consen 245 EIWAVGGS-GTLLV-STDGG-KTWQKDRVGENVPSNLYRIVFVNPDK-GFVLGQDGVLLRY 301 (302)
T ss_dssp -EEEEEST-T-EEE-ESSTT-SS-EE-GGGTTSSS---EEEEEETTE-EEEE-STTEEEEE
T ss_pred CEEEEeCC-ccEEE-eCCCC-ccceECccccCCCCceEEEEEcCCCc-eEEECCCcEEEEe
Confidence 77776664 44432 22222 22222222223455688999986654 4455678876554
No 400
>COG5276 Uncharacterized conserved protein [Function unknown]
Probab=96.50 E-value=0.94 Score=44.30 Aligned_cols=298 Identities=11% Similarity=0.115 Sum_probs=161.1
Q ss_pred EEEEEEcCCeEEEEEcCccE------EEEecCCCCCCcEEEEEeCCeEEEEECCe-EEEEECCee---EEE-EccccccE
Q 003579 28 NFVTVSVGKAFHIYNCAKLN------LVLVGPQLPKKIRALASYRDYTFAAYGNH-IAVVKRAHQ---VAT-WSRHSAKV 96 (809)
Q Consensus 28 ~~i~~~~~~~i~iwd~~~~~------~~~~~~~~~~~I~~la~~~~~~~~a~g~~-i~vw~~~~~---~~~-~~~h~~~V 96 (809)
..+-...|.-+.+.|+.+-. ++.+ -..+.-+..+.++.++.|+|-++. +++.|.... ... .....+--
T Consensus 53 ~ya~v~qG~~l~i~ditn~~~~t~~~l~~~-i~~~~l~~Dv~vse~yvyvad~ssGL~IvDIS~P~sP~~~~~lnt~gya 131 (370)
T COG5276 53 AYAYVGQGFILAILDITNVSLQTHDVLLSV-INARDLFADVRVSEEYVYVADWSSGLRIVDISTPDSPTLIGFLNTDGYA 131 (370)
T ss_pred cccccccCceEeeccccCcccccCcceEEE-EehhhhhheeEecccEEEEEcCCCceEEEeccCCCCcceeccccCCceE
Confidence 34444455555555554422 2222 235677788899999999998766 999986432 222 22222445
Q ss_pred EEEEEeCCEEEEEeCCCcEEEEEcCCCccccceeeeEEcCCccccEEEEeCCCCCCEEEEEeCCCeEEEEeCCCCc---e
Q 003579 97 NLLLLFGEHILSIDIDGNMFIWAFKGIEENLAPVGHVKLDDKFTPTCIMHPDTYLNKVIVGSQEGSLQLWNISTKK---K 173 (809)
Q Consensus 97 ~~l~~~g~~l~s~~~dg~i~vWd~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~l~~~~~dg~i~lwd~~~~~---~ 173 (809)
.++...|++...+.-|.-+.+.|+.+..... ...............+++ + ++-+++..|+-+.+.|+.+.. .
T Consensus 132 ygv~vsGn~aYVadlddgfLivdvsdpssP~-lagrya~~~~d~~~v~IS--G--n~AYvA~~d~GL~ivDVSnp~sPvl 206 (370)
T COG5276 132 YGVYVSGNYAYVADLDDGFLIVDVSDPSSPQ-LAGRYALPGGDTHDVAIS--G--NYAYVAWRDGGLTIVDVSNPHSPVL 206 (370)
T ss_pred EEEEecCCEEEEeeccCcEEEEECCCCCCce-eeeeeccCCCCceeEEEe--c--CeEEEEEeCCCeEEEEccCCCCCeE
Confidence 6777899999999877778889998876521 133344444333344443 4 668888888889999997643 2
Q ss_pred EEEEcCCCCCEEEEEEcCCCCEEEEEeCCCeEEEEEeeCCeEEEEEeccCCCcEEEE-EEecCCCCEEEEEcCCCcEEEE
Q 003579 174 LYEFKGWGSSISSCVSSPALDVVAVGCSDGKIHVHNVRYDEELVTFTHSMRGAVTAL-AFSSDGQPLLASGASSGVISIW 252 (809)
Q Consensus 174 ~~~~~~~~~~I~~l~~sp~~~~la~g~~dg~i~iwd~~~~~~~~~~~~~~~~~V~~l-~fs~dg~~~lasg~~dg~I~iw 252 (809)
+.... ....+.++..+++-.+++.... -+.+-|....+....+.......+.++ .|.-.++ +......+.-+.+-
T Consensus 207 i~~~n-~g~g~~sv~vsdnr~y~vvy~e--gvlivd~s~~ssp~~~gsyet~~p~~~s~v~Vs~~-~~Yvadga~gl~~i 282 (370)
T COG5276 207 IGSYN-TGPGTYSVSVSDNRAYLVVYDE--GVLIVDVSGPSSPTVFGSYETSNPVSISTVPVSGE-YAYVADGAKGLPII 282 (370)
T ss_pred EEEEe-cCCceEEEEecCCeeEEEEccc--ceEEEecCCCCCceEeeccccCCcccccceecccc-eeeeeccccCceeE
Confidence 22222 2347888888888777776543 466777766554444432222333333 2222344 45555556666666
Q ss_pred ECCCceee---eeeecccccceEEEEEecCCCEEEEEcCCCcEEEEEeeCCCCCceeEEeccCCCCCCeeEEEecCCCEE
Q 003579 253 NLEKRRLQ---SVIREAHDNAIISLHFFANEPVLMSASADNSIKMWIFDTTDGDPRLLRFRSGHSAPPLCIRFYANGRHI 329 (809)
Q Consensus 253 dl~~~~~~---~~~~~~h~~~V~~l~~~~~~~~l~s~s~d~~i~vw~~~~~~~~~~~~~~~~~h~~~v~~i~~~~~~~~l 329 (809)
|+++..-- ..+. .....-..+..+ +.++..+..+ ...+-+.... +....+.+-...+.+...+-+.+.+
T Consensus 283 disnp~spfl~ss~~-t~g~~a~gi~ay--~~y~yiadkn-~g~vV~~s~~----s~m~~~~g~~ti~~s~~v~~~~q~~ 354 (370)
T COG5276 283 DISNPPSPFLSSSLD-TAGYQAAGIRAY--GNYNYIADKN-TGAVVDASPP----SMMDKRPGRPTIGQSCDVSVDTQII 354 (370)
T ss_pred eccCCCCCchhcccc-CCCccccceEEe--cCeeEeccCC-ceEEEeCCCh----hhcccccCcceEeeecceEEEeeEE
Confidence 76554221 1111 011112222222 2233333333 2222222211 1111111222223333333345577
Q ss_pred EEEECCCCEEEEEe
Q 003579 330 LSAGQDRAFRLFSV 343 (809)
Q Consensus 330 ~s~~~dg~i~~wd~ 343 (809)
.+...++.+.+|+.
T Consensus 355 y~~d~~~gl~i~~~ 368 (370)
T COG5276 355 YSTDYNGGLSIIEY 368 (370)
T ss_pred EEeecCCCEEEEEe
Confidence 78888888988875
No 401
>KOG4499 consensus Ca2+-binding protein Regucalcin/SMP30 [Inorganic ion transport and metabolism; Signal transduction mechanisms]
Probab=96.45 E-value=0.83 Score=43.07 Aligned_cols=143 Identities=9% Similarity=0.144 Sum_probs=88.7
Q ss_pred cccEEEEEEcCCCCEEEEEeCc---------CeEEEEECCCCceeeeeecCCCeEEEEEeeCCCEEEEE-eCCCeEEEEE
Q 003579 474 NGEVVGVACDSTNTLMISAGYH---------GDIKVWDFKGRDLKSRWEVGCSLVKIVYHRVNGLLATV-ADDLVIRLFD 543 (809)
Q Consensus 474 ~~~v~~l~~~~~~~~l~s~~~d---------g~i~iwd~~~~~~~~~~~~~~~i~~~~~s~~~~~la~~-~~d~~I~v~d 543 (809)
+...+.-.++|+|++.+-.-.| |.++.|-.. ++....+..-.-.+.++|+.+.+.+... +.+..|.-||
T Consensus 108 knR~NDgkvdP~Gryy~GtMad~~~~le~~~g~Ly~~~~~-h~v~~i~~~v~IsNgl~Wd~d~K~fY~iDsln~~V~a~d 186 (310)
T KOG4499|consen 108 KNRLNDGKVDPDGRYYGGTMADFGDDLEPIGGELYSWLAG-HQVELIWNCVGISNGLAWDSDAKKFYYIDSLNYEVDAYD 186 (310)
T ss_pred hcccccCccCCCCceeeeeeccccccccccccEEEEeccC-CCceeeehhccCCccccccccCcEEEEEccCceEEeeee
Confidence 4456666789999985533332 334444322 2222222222445668888877755544 5577887777
Q ss_pred --cCCCeE-----EEEEec----CCCCeeeEEECCCCCEEEEEeCCCeEEEEEcCCccEEEEeeeCcc-eEEEEEcCC-C
Q 003579 544 --VVALRM-----VRKFEG----HTDRITDFCFSEDGKWLLSSGMDGSLRIWDVILARQIDAIHVDVS-ITALSLSPN-M 610 (809)
Q Consensus 544 --~~~~~~-----~~~~~~----h~~~I~~l~fspdg~~l~s~s~D~~I~vwd~~~~~~i~~~~~~~~-v~~l~~spd-g 610 (809)
..+|.. +..++. ..-.--.++...+|.+.+++-..++|...|..+|+.+..+..+.+ ++|++|--- -
T Consensus 187 yd~~tG~~snr~~i~dlrk~~~~e~~~PDGm~ID~eG~L~Va~~ng~~V~~~dp~tGK~L~eiklPt~qitsccFgGkn~ 266 (310)
T KOG4499|consen 187 YDCPTGDLSNRKVIFDLRKSQPFESLEPDGMTIDTEGNLYVATFNGGTVQKVDPTTGKILLEIKLPTPQITSCCFGGKNL 266 (310)
T ss_pred cCCCcccccCcceeEEeccCCCcCCCCCCcceEccCCcEEEEEecCcEEEEECCCCCcEEEEEEcCCCceEEEEecCCCc
Confidence 555532 333332 111223466677888888888889999999999999999998876 999999632 2
Q ss_pred CeEEEEE
Q 003579 611 DVLATAH 617 (809)
Q Consensus 611 ~~lat~~ 617 (809)
+.|.+..
T Consensus 267 d~~yvT~ 273 (310)
T KOG4499|consen 267 DILYVTT 273 (310)
T ss_pred cEEEEEe
Confidence 3444433
No 402
>PF10647 Gmad1: Lipoprotein LpqB beta-propeller domain; InterPro: IPR018910 The Gmad1 domain is found associated with IPR019606 from INTERPRO, in bacterial spore formation. It is predicted to have a beta-propeller fold and to have a passive binding role rather than a catalytic function owing to the low number of conserved hydrophilic residues.
Probab=96.44 E-value=1 Score=45.03 Aligned_cols=116 Identities=13% Similarity=0.143 Sum_probs=70.3
Q ss_pred cEEEEEEecCCCCEEEEEc--CCCcEEEEECCCceeeeeeecccccceEEEEEecCCCEEEEEcCCCcEEEEEee-CCCC
Q 003579 226 AVTALAFSSDGQPLLASGA--SSGVISIWNLEKRRLQSVIREAHDNAIISLHFFANEPVLMSASADNSIKMWIFD-TTDG 302 (809)
Q Consensus 226 ~V~~l~fs~dg~~~lasg~--~dg~I~iwdl~~~~~~~~~~~~h~~~V~~l~~~~~~~~l~s~s~d~~i~vw~~~-~~~~ 302 (809)
.+.+.+.++||+.+.++.. ....+.++.. +....... -...+....|.+++...+....+...+++... ....
T Consensus 25 ~~~s~AvS~dg~~~A~v~~~~~~~~L~~~~~--~~~~~~~~--~g~~l~~PS~d~~g~~W~v~~~~~~~~~~~~~~~g~~ 100 (253)
T PF10647_consen 25 DVTSPAVSPDGSRVAAVSEGDGGRSLYVGPA--GGPVRPVL--TGGSLTRPSWDPDGWVWTVDDGSGGVRVVRDSASGTG 100 (253)
T ss_pred cccceEECCCCCeEEEEEEcCCCCEEEEEcC--CCcceeec--cCCccccccccCCCCEEEEEcCCCceEEEEecCCCcc
Confidence 6899999999985555552 3344555543 33333322 22378888999998777776666767776421 1221
Q ss_pred CceeEEeccCCCCCCeeEEEecCCCEEEEEE---CCCCEEEEEeeec
Q 003579 303 DPRLLRFRSGHSAPPLCIRFYANGRHILSAG---QDRAFRLFSVIQD 346 (809)
Q Consensus 303 ~~~~~~~~~~h~~~v~~i~~~~~~~~l~s~~---~dg~i~~wd~~~~ 346 (809)
....+... .-...|..++++|||..++... .++.|.+--+..+
T Consensus 101 ~~~~v~~~-~~~~~I~~l~vSpDG~RvA~v~~~~~~~~v~va~V~r~ 146 (253)
T PF10647_consen 101 EPVEVDWP-GLRGRITALRVSPDGTRVAVVVEDGGGGRVYVAGVVRD 146 (253)
T ss_pred eeEEeccc-ccCCceEEEEECCCCcEEEEEEecCCCCeEEEEEEEeC
Confidence 11222211 1122899999999999888665 3466766665543
No 403
>KOG3630 consensus Nuclear pore complex, Nup214/CAN component [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=96.37 E-value=0.078 Score=60.67 Aligned_cols=150 Identities=7% Similarity=-0.015 Sum_probs=97.2
Q ss_pred CCeEEEEEcCCCCEEEEEeCCC--cEEEEECCCCceeeeeeCc---ccccccCccccEEEEEEcCCC-CEEEEEeCcCeE
Q 003579 425 TAVKACTISACGNFAVLGTAGG--WIERFNLQSGISRGSYLDM---SERSNYAHNGEVVGVACDSTN-TLMISAGYHGDI 498 (809)
Q Consensus 425 ~~v~~v~~s~~g~~l~~g~~~g--~i~i~~~~~~~~~~~~~~~---~~~~~~~h~~~v~~l~~~~~~-~~l~s~~~dg~i 498 (809)
..+..+...+|+.+.++..... .|+.||+.+-......... .............++.|.|.- ...+.+..|+.|
T Consensus 101 ~pi~~~v~~~D~t~s~v~~tsng~~v~~fD~~~fs~s~~~~~~pl~~s~ts~ek~vf~~~~~wnP~vp~n~av~l~dlsl 180 (1405)
T KOG3630|consen 101 IPIVIFVCFHDATDSVVVSTSNGEAVYSFDLEEFSESRYETTVPLKNSATSFEKPVFQLKNVWNPLVPLNSAVDLSDLSL 180 (1405)
T ss_pred ccceEEEeccCCceEEEEEecCCceEEEEehHhhhhhhhhhccccccccchhccccccccccccCCccchhhhhccccch
Confidence 4566677778887776655444 7888998764333211110 000111223345667777754 335666788999
Q ss_pred EEEECCCCc-eeeeeecCCCeEEEEEeeCCCEEEEEeCCCeEEEEEcCCCeEEEEEecC----CCCeeeEEECCCCCEEE
Q 003579 499 KVWDFKGRD-LKSRWEVGCSLVKIVYHRVNGLLATVADDLVIRLFDVVALRMVRKFEGH----TDRITDFCFSEDGKWLL 573 (809)
Q Consensus 499 ~iwd~~~~~-~~~~~~~~~~i~~~~~s~~~~~la~~~~d~~I~v~d~~~~~~~~~~~~h----~~~I~~l~fspdg~~l~ 573 (809)
++..+.... ....+......++++|+|.|+.+++|-..|++.-|... ++..+.+.+. ..+|.+++|-..-.||+
T Consensus 181 ~V~~~~~~~~~v~s~p~t~~~Tav~WSprGKQl~iG~nnGt~vQy~P~-leik~~ip~Pp~~e~yrvl~v~Wl~t~eflv 259 (1405)
T KOG3630|consen 181 RVKSTKQLAQNVTSFPVTNSQTAVLWSPRGKQLFIGRNNGTEVQYEPS-LEIKSEIPEPPVEENYRVLSVTWLSTQEFLV 259 (1405)
T ss_pred hhhhhhhhhhhhcccCcccceeeEEeccccceeeEecCCCeEEEeecc-cceeecccCCCcCCCcceeEEEEecceeEEE
Confidence 988776432 33345666889999999999999999999999888643 3444444331 36799999988777777
Q ss_pred EE
Q 003579 574 SS 575 (809)
Q Consensus 574 s~ 575 (809)
+-
T Consensus 260 vy 261 (1405)
T KOG3630|consen 260 VY 261 (1405)
T ss_pred Ee
Confidence 43
No 404
>KOG4499 consensus Ca2+-binding protein Regucalcin/SMP30 [Inorganic ion transport and metabolism; Signal transduction mechanisms]
Probab=96.27 E-value=0.84 Score=43.05 Aligned_cols=142 Identities=13% Similarity=0.140 Sum_probs=84.6
Q ss_pred CeEEEEEcCCCCEEEEEeCCCcEEEEECCCCceeeeeeCcccccccCccccEEEEEEcCCCCEEE-EEeCcCeEEEEE--
Q 003579 426 AVKACTISACGNFAVLGTAGGWIERFNLQSGISRGSYLDMSERSNYAHNGEVVGVACDSTNTLMI-SAGYHGDIKVWD-- 502 (809)
Q Consensus 426 ~v~~v~~s~~g~~l~~g~~~g~i~i~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~l~-s~~~dg~i~iwd-- 502 (809)
....-.++|+|++ ..|+..-.-..+....|.+..-+...........-+--++++|+.+.+.+. +-+.+-.|.-||
T Consensus 110 R~NDgkvdP~Gry-y~GtMad~~~~le~~~g~Ly~~~~~h~v~~i~~~v~IsNgl~Wd~d~K~fY~iDsln~~V~a~dyd 188 (310)
T KOG4499|consen 110 RLNDGKVDPDGRY-YGGTMADFGDDLEPIGGELYSWLAGHQVELIWNCVGISNGLAWDSDAKKFYYIDSLNYEVDAYDYD 188 (310)
T ss_pred ccccCccCCCCce-eeeeeccccccccccccEEEEeccCCCceeeehhccCCccccccccCcEEEEEccCceEEeeeecC
Confidence 3444567889988 555443221222222232222222000000001122336788888776554 445667787787
Q ss_pred CCCCcee-----eeeec-----CCCeEEEEEeeCCCEEEEEeCCCeEEEEEcCCCeEEEEEecCCCCeeeEEECCC
Q 003579 503 FKGRDLK-----SRWEV-----GCSLVKIVYHRVNGLLATVADDLVIRLFDVVALRMVRKFEGHTDRITDFCFSED 568 (809)
Q Consensus 503 ~~~~~~~-----~~~~~-----~~~i~~~~~s~~~~~la~~~~d~~I~v~d~~~~~~~~~~~~h~~~I~~l~fspd 568 (809)
..+|... ..++. +...-.+++..+|.+.++....++|..+|..+|+.+.++.-.+..|++++|--.
T Consensus 189 ~~tG~~snr~~i~dlrk~~~~e~~~PDGm~ID~eG~L~Va~~ng~~V~~~dp~tGK~L~eiklPt~qitsccFgGk 264 (310)
T KOG4499|consen 189 CPTGDLSNRKVIFDLRKSQPFESLEPDGMTIDTEGNLYVATFNGGTVQKVDPTTGKILLEIKLPTPQITSCCFGGK 264 (310)
T ss_pred CCcccccCcceeEEeccCCCcCCCCCCcceEccCCcEEEEEecCcEEEEECCCCCcEEEEEEcCCCceEEEEecCC
Confidence 5555332 11211 122344666778888888889999999999999999999989999999999643
No 405
>PF12894 Apc4_WD40: Anaphase-promoting complex subunit 4 WD40 domain
Probab=96.24 E-value=0.016 Score=39.92 Aligned_cols=34 Identities=26% Similarity=0.435 Sum_probs=30.3
Q ss_pred CCCEEEEEEcCCCCEEEEEeCCCeEEEEEeeCCeE
Q 003579 181 GSSISSCVSSPALDVVAVGCSDGKIHVHNVRYDEE 215 (809)
Q Consensus 181 ~~~I~~l~~sp~~~~la~g~~dg~i~iwd~~~~~~ 215 (809)
...|.+++|+|..++||+|+.+|.|.+|.+ +++.
T Consensus 11 ~~~v~~~~w~P~mdLiA~~t~~g~v~v~Rl-~~qr 44 (47)
T PF12894_consen 11 PSRVSCMSWCPTMDLIALGTEDGEVLVYRL-NWQR 44 (47)
T ss_pred CCcEEEEEECCCCCEEEEEECCCeEEEEEC-CCcC
Confidence 567999999999999999999999999998 4544
No 406
>PF10647 Gmad1: Lipoprotein LpqB beta-propeller domain; InterPro: IPR018910 The Gmad1 domain is found associated with IPR019606 from INTERPRO, in bacterial spore formation. It is predicted to have a beta-propeller fold and to have a passive binding role rather than a catalytic function owing to the low number of conserved hydrophilic residues.
Probab=96.22 E-value=0.53 Score=47.00 Aligned_cols=151 Identities=13% Similarity=0.095 Sum_probs=92.9
Q ss_pred CEEEEEEcCCCCEEEEEe-CCCeEEEEEeeCCeEEEEEeccCCCcEEEEEEecCCCCEEEEEcCCCcEEEEE-CCCceee
Q 003579 183 SISSCVSSPALDVVAVGC-SDGKIHVHNVRYDEELVTFTHSMRGAVTALAFSSDGQPLLASGASSGVISIWN-LEKRRLQ 260 (809)
Q Consensus 183 ~I~~l~~sp~~~~la~g~-~dg~i~iwd~~~~~~~~~~~~~~~~~V~~l~fs~dg~~~lasg~~dg~I~iwd-l~~~~~~ 260 (809)
.+.+.+.+++++.+|... .++.-.+|-...+........ ...++.-+|++++. +.+....+...+++. ..++...
T Consensus 25 ~~~s~AvS~dg~~~A~v~~~~~~~~L~~~~~~~~~~~~~~--g~~l~~PS~d~~g~-~W~v~~~~~~~~~~~~~~~g~~~ 101 (253)
T PF10647_consen 25 DVTSPAVSPDGSRVAAVSEGDGGRSLYVGPAGGPVRPVLT--GGSLTRPSWDPDGW-VWTVDDGSGGVRVVRDSASGTGE 101 (253)
T ss_pred cccceEECCCCCeEEEEEEcCCCCEEEEEcCCCcceeecc--CCccccccccCCCC-EEEEEcCCCceEEEEecCCCcce
Confidence 788999999999887665 233344444444554444432 34788999999987 666656566666663 3333222
Q ss_pred e-eee-cccccceEEEEEecCCCEEEEEc---CCCcEEEEEeeCCCCC-ceeE----EeccCCCCCCeeEEEecCCCEEE
Q 003579 261 S-VIR-EAHDNAIISLHFFANEPVLMSAS---ADNSIKMWIFDTTDGD-PRLL----RFRSGHSAPPLCIRFYANGRHIL 330 (809)
Q Consensus 261 ~-~~~-~~h~~~V~~l~~~~~~~~l~s~s---~d~~i~vw~~~~~~~~-~~~~----~~~~~h~~~v~~i~~~~~~~~l~ 330 (809)
. .+. ..-.+.|..+.++|||..++... .++.|.+=-+...... +..+ .........+..+.|.+++.+++
T Consensus 102 ~~~v~~~~~~~~I~~l~vSpDG~RvA~v~~~~~~~~v~va~V~r~~~g~~~~l~~~~~~~~~~~~~v~~v~W~~~~~L~V 181 (253)
T PF10647_consen 102 PVEVDWPGLRGRITALRVSPDGTRVAVVVEDGGGGRVYVAGVVRDGDGVPRRLTGPRRVAPPLLSDVTDVAWSDDSTLVV 181 (253)
T ss_pred eEEecccccCCceEEEEECCCCcEEEEEEecCCCCeEEEEEEEeCCCCCcceeccceEecccccCcceeeeecCCCEEEE
Confidence 1 111 11112899999999999777655 3466666655433222 2222 22223456789999999988777
Q ss_pred EEECCC
Q 003579 331 SAGQDR 336 (809)
Q Consensus 331 s~~~dg 336 (809)
.+...+
T Consensus 182 ~~~~~~ 187 (253)
T PF10647_consen 182 LGRSAG 187 (253)
T ss_pred EeCCCC
Confidence 665444
No 407
>KOG2079 consensus Vacuolar assembly/sorting protein VPS8 [Intracellular trafficking, secretion, and vesicular transport]
Probab=96.20 E-value=0.017 Score=65.49 Aligned_cols=101 Identities=17% Similarity=0.294 Sum_probs=77.7
Q ss_pred CCCEEEEEeCcCeEEEEECCCCce--eeeeecCCCeEEEEEeeCCCEEEEEeCCCeEEEEEcCCCeEEEEEecCCCCeee
Q 003579 485 TNTLMISAGYHGDIKVWDFKGRDL--KSRWEVGCSLVKIVYHRVNGLLATVADDLVIRLFDVVALRMVRKFEGHTDRITD 562 (809)
Q Consensus 485 ~~~~l~s~~~dg~i~iwd~~~~~~--~~~~~~~~~i~~~~~s~~~~~la~~~~d~~I~v~d~~~~~~~~~~~~h~~~I~~ 562 (809)
.+..++.|+..|.+-..|....-. ..-.....++++++|+.+|..++.|-.+|.|.+||+..++..+.+..|..+.+.
T Consensus 98 ~~~~ivi~Ts~ghvl~~d~~~nL~~~~~ne~v~~~Vtsvafn~dg~~l~~G~~~G~V~v~D~~~~k~l~~i~e~~ap~t~ 177 (1206)
T KOG2079|consen 98 VVVPIVIGTSHGHVLLSDMTGNLGPLHQNERVQGPVTSVAFNQDGSLLLAGLGDGHVTVWDMHRAKILKVITEHGAPVTG 177 (1206)
T ss_pred eeeeEEEEcCchhhhhhhhhcccchhhcCCccCCcceeeEecCCCceeccccCCCcEEEEEccCCcceeeeeecCCccce
Confidence 455788888889888888765311 223344589999999999999999999999999999999999998887777665
Q ss_pred EE---ECCCCCEEEEEeCCCeEEEEEcC
Q 003579 563 FC---FSEDGKWLLSSGMDGSLRIWDVI 587 (809)
Q Consensus 563 l~---fspdg~~l~s~s~D~~I~vwd~~ 587 (809)
+- +..++..+.++..-|. +|.+.
T Consensus 178 vi~v~~t~~nS~llt~D~~Gs--f~~lv 203 (1206)
T KOG2079|consen 178 VIFVGRTSQNSKLLTSDTGGS--FWKLV 203 (1206)
T ss_pred EEEEEEeCCCcEEEEccCCCc--eEEEE
Confidence 54 3445667788877775 67653
No 408
>PF14727 PHTB1_N: PTHB1 N-terminus
Probab=96.11 E-value=2.5 Score=45.14 Aligned_cols=110 Identities=15% Similarity=0.220 Sum_probs=63.0
Q ss_pred cCCCCEEEEEcCCCcEEEEECCCceee---eeeecccccceEEEEEec-----CCCEEEEEcCCCcEEEEEeeCCCCC--
Q 003579 234 SDGQPLLASGASSGVISIWNLEKRRLQ---SVIREAHDNAIISLHFFA-----NEPVLMSASADNSIKMWIFDTTDGD-- 303 (809)
Q Consensus 234 ~dg~~~lasg~~dg~I~iwdl~~~~~~---~~~~~~h~~~V~~l~~~~-----~~~~l~s~s~d~~i~vw~~~~~~~~-- 303 (809)
++++..+++|+..|.++||+...+... ..+...-..+|..+..-. +...|+. =.-+.+.+|.+....+.
T Consensus 34 ~~~~d~IivGS~~G~LrIy~P~~~~~~~~~lllE~~l~~PILqv~~G~F~s~~~~~~LaV-LhP~kl~vY~v~~~~g~~~ 112 (418)
T PF14727_consen 34 PSGSDKIIVGSYSGILRIYDPSGNEFQPEDLLLETQLKDPILQVECGKFVSGSEDLQLAV-LHPRKLSVYSVSLVDGTVE 112 (418)
T ss_pred CCCccEEEEeccccEEEEEccCCCCCCCccEEEEEecCCcEEEEEeccccCCCCcceEEE-ecCCEEEEEEEEecCCCcc
Confidence 445558999999999999998654311 112222456777776532 2224444 34567888877544433
Q ss_pred ---ceeEEeccCCCCC--CeeEEEec----C-CCEEEEEECCCCEEEEEee
Q 003579 304 ---PRLLRFRSGHSAP--PLCIRFYA----N-GRHILSAGQDRAFRLFSVI 344 (809)
Q Consensus 304 ---~~~~~~~~~h~~~--v~~i~~~~----~-~~~l~s~~~dg~i~~wd~~ 344 (809)
.-.+.....|.-+ ...+++-| . -.++++-+.||.+.+|+-.
T Consensus 113 ~g~~~~L~~~yeh~l~~~a~nm~~G~Fgg~~~~~~IcVQS~DG~L~~feqe 163 (418)
T PF14727_consen 113 HGNQYQLELIYEHSLQRTAYNMCCGPFGGVKGRDFICVQSMDGSLSFFEQE 163 (418)
T ss_pred cCcEEEEEEEEEEecccceeEEEEEECCCCCCceEEEEEecCceEEEEeCC
Confidence 1122222233322 22333333 2 3578888999999999843
No 409
>COG3292 Predicted periplasmic ligand-binding sensor domain [Signal transduction mechanisms]
Probab=96.08 E-value=1 Score=48.23 Aligned_cols=135 Identities=17% Similarity=0.187 Sum_probs=78.1
Q ss_pred CEEEEEeCCCeEEEEeCCCCceEEEEcCCC-CCEEEEEEcCCCCEEEEEeCCCeEEEEEeeCCeEEEEEeccCCCcEEEE
Q 003579 152 NKVIVGSQEGSLQLWNISTKKKLYEFKGWG-SSISSCVSSPALDVVAVGCSDGKIHVHNVRYDEELVTFTHSMRGAVTAL 230 (809)
Q Consensus 152 ~~l~~~~~dg~i~lwd~~~~~~~~~~~~~~-~~I~~l~~sp~~~~la~g~~dg~i~iwd~~~~~~~~~~~~~~~~~V~~l 230 (809)
+.+.+|+.+| +..||..+++.++.-.... .+|..+..+-.+ .+.+|+.+| +.+.+.+..+.......-..+.|..+
T Consensus 176 g~lWvgT~dG-L~~fd~~~gkalql~s~~~dk~I~al~~d~qg-~LWVGTdqG-v~~~e~~G~~~sn~~~~lp~~~I~ll 252 (671)
T COG3292 176 GRLWVGTPDG-LSYFDAGRGKALQLASPPLDKAINALIADVQG-RLWVGTDQG-VYLQEAEGWRASNWGPMLPSGNILLL 252 (671)
T ss_pred CcEEEecCCc-ceEEccccceEEEcCCCcchhhHHHHHHHhcC-cEEEEeccc-eEEEchhhccccccCCCCcchheeee
Confidence 4688898888 8889999998887655443 677777776666 477777766 67777654222222222224556666
Q ss_pred EEecCCCCEEEEEcCCCcEEEEECCCceeeeeeeccc--ccceEEEEEecCCCEEEEEcCCCcEE
Q 003579 231 AFSSDGQPLLASGASSGVISIWNLEKRRLQSVIREAH--DNAIISLHFFANEPVLMSASADNSIK 293 (809)
Q Consensus 231 ~fs~dg~~~lasg~~dg~I~iwdl~~~~~~~~~~~~h--~~~V~~l~~~~~~~~l~s~s~d~~i~ 293 (809)
.=..+|. +-.|+.+|..+ ..+..+.+......-| -+.|.++....+|. |-+++.++.++
T Consensus 253 ~qD~qG~--lWiGTenGl~r-~~l~rq~Lq~~~~~~~l~~S~vnsL~~D~dGs-LWv~t~~giv~ 313 (671)
T COG3292 253 VQDAQGE--LWIGTENGLWR-TRLPRQGLQIPLSKMHLGVSTVNSLWLDTDGS-LWVGTYGGIVR 313 (671)
T ss_pred ecccCCC--EEEeeccccee-EecCCCCccccccccCCccccccceeeccCCC-EeeeccCceEE
Confidence 5555554 66777666443 3444443332222122 23456666555554 44455555443
No 410
>PHA02713 hypothetical protein; Provisional
Probab=96.07 E-value=0.37 Score=54.36 Aligned_cols=188 Identities=10% Similarity=0.063 Sum_probs=92.1
Q ss_pred CEEEEEeCC------CeEEEEeCCCCceEEEEcCCCCCE-EEEEEcCCCCEEEEEeCCC-----eEEEEEeeCCeEEEEE
Q 003579 152 NKVIVGSQE------GSLQLWNISTKKKLYEFKGWGSSI-SSCVSSPALDVVAVGCSDG-----KIHVHNVRYDEELVTF 219 (809)
Q Consensus 152 ~~l~~~~~d------g~i~lwd~~~~~~~~~~~~~~~~I-~~l~~sp~~~~la~g~~dg-----~i~iwd~~~~~~~~~~ 219 (809)
...++|+.+ ..+..||..+.+-. .+..-..+. ......-++.+.++|+.++ .+..||..+++-...-
T Consensus 305 ~IYviGG~~~~~~~~~~v~~Yd~~~n~W~-~~~~m~~~R~~~~~~~~~g~IYviGG~~~~~~~~sve~Ydp~~~~W~~~~ 383 (557)
T PHA02713 305 EIIIAGGYNFNNPSLNKVYKINIENKIHV-ELPPMIKNRCRFSLAVIDDTIYAIGGQNGTNVERTIECYTMGDDKWKMLP 383 (557)
T ss_pred EEEEEcCCCCCCCccceEEEEECCCCeEe-eCCCCcchhhceeEEEECCEEEEECCcCCCCCCceEEEEECCCCeEEECC
Confidence 345556543 34778887765421 121111111 1112223567778887654 4788998876533211
Q ss_pred eccC-CCcEEEEEEecCCCCEEEEEcCC-----------------------CcEEEEECCCceeeeeeecccccceEEEE
Q 003579 220 THSM-RGAVTALAFSSDGQPLLASGASS-----------------------GVISIWNLEKRRLQSVIREAHDNAIISLH 275 (809)
Q Consensus 220 ~~~~-~~~V~~l~fs~dg~~~lasg~~d-----------------------g~I~iwdl~~~~~~~~~~~~h~~~V~~l~ 275 (809)
.... ......+ .-+|. +.+.|+.+ ..+..||.++.+-...-...+...-.+++
T Consensus 384 ~mp~~r~~~~~~--~~~g~-IYviGG~~~~~~~~~~~~~~~~~~~~~~~~~~~ve~YDP~td~W~~v~~m~~~r~~~~~~ 460 (557)
T PHA02713 384 DMPIALSSYGMC--VLDQY-IYIIGGRTEHIDYTSVHHMNSIDMEEDTHSSNKVIRYDTVNNIWETLPNFWTGTIRPGVV 460 (557)
T ss_pred CCCcccccccEE--EECCE-EEEEeCCCcccccccccccccccccccccccceEEEECCCCCeEeecCCCCcccccCcEE
Confidence 1110 1111122 23566 77777754 24778888876432221101111111222
Q ss_pred EecCCCEEEEEcCCC------cEEEEEeeCCC-CCceeEEeccCCCCCCeeEEEecCCCEEEEEECCC--CEEEEEeeec
Q 003579 276 FFANEPVLMSASADN------SIKMWIFDTTD-GDPRLLRFRSGHSAPPLCIRFYANGRHILSAGQDR--AFRLFSVIQD 346 (809)
Q Consensus 276 ~~~~~~~l~s~s~d~------~i~vw~~~~~~-~~~~~~~~~~~h~~~v~~i~~~~~~~~l~s~~~dg--~i~~wd~~~~ 346 (809)
.-++.+.+.||.++ .+..| +... ..+..+............+.+ +|+..++||.++ ++..||..++
T Consensus 461 -~~~~~IYv~GG~~~~~~~~~~ve~Y--dp~~~~~W~~~~~m~~~r~~~~~~~~--~~~iyv~Gg~~~~~~~e~yd~~~~ 535 (557)
T PHA02713 461 -SHKDDIYVVCDIKDEKNVKTCIFRY--NTNTYNGWELITTTESRLSALHTILH--DNTIMMLHCYESYMLQDTFNVYTY 535 (557)
T ss_pred -EECCEEEEEeCCCCCCccceeEEEe--cCCCCCCeeEccccCcccccceeEEE--CCEEEEEeeecceeehhhcCcccc
Confidence 33566667776542 23445 4443 345544444333332222332 678888998888 6667776655
Q ss_pred cc
Q 003579 347 QQ 348 (809)
Q Consensus 347 ~~ 348 (809)
+-
T Consensus 536 ~W 537 (557)
T PHA02713 536 EW 537 (557)
T ss_pred cc
Confidence 43
No 411
>PHA02713 hypothetical protein; Provisional
Probab=96.01 E-value=0.52 Score=53.14 Aligned_cols=214 Identities=12% Similarity=0.107 Sum_probs=105.5
Q ss_pred eEEEEEcCccEEEEecCCCCCC--cEEEEEeCCeEEEEECCe--------EEEEECCeeEEE----EccccccEEEEEEe
Q 003579 37 AFHIYNCAKLNLVLVGPQLPKK--IRALASYRDYTFAAYGNH--------IAVVKRAHQVAT----WSRHSAKVNLLLLF 102 (809)
Q Consensus 37 ~i~iwd~~~~~~~~~~~~~~~~--I~~la~~~~~~~~a~g~~--------i~vw~~~~~~~~----~~~h~~~V~~l~~~ 102 (809)
.+..||..+.+-....+ .+.+ =.+++...+.+|++.|.. +..||.....-. +............+
T Consensus 273 ~v~~yd~~~~~W~~l~~-mp~~r~~~~~a~l~~~IYviGG~~~~~~~~~~v~~Yd~~~n~W~~~~~m~~~R~~~~~~~~~ 351 (557)
T PHA02713 273 CILVYNINTMEYSVIST-IPNHIINYASAIVDNEIIIAGGYNFNNPSLNKVYKINIENKIHVELPPMIKNRCRFSLAVID 351 (557)
T ss_pred CEEEEeCCCCeEEECCC-CCccccceEEEEECCEEEEEcCCCCCCCccceEEEEECCCCeEeeCCCCcchhhceeEEEEC
Confidence 57789998876544332 2222 245666677888877631 667775332111 11111122233345
Q ss_pred CCEEEEEeCCC-----cEEEEEcCCCccccceeeeEEcCCccccEEEEeCCCCCCEEEEEeCC-----------------
Q 003579 103 GEHILSIDIDG-----NMFIWAFKGIEENLAPVGHVKLDDKFTPTCIMHPDTYLNKVIVGSQE----------------- 160 (809)
Q Consensus 103 g~~l~s~~~dg-----~i~vWd~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~l~~~~~d----------------- 160 (809)
|...+.|+.++ ++..||..+.+-. .+..+...... ..+..-++ ...++|+.+
T Consensus 352 g~IYviGG~~~~~~~~sve~Ydp~~~~W~--~~~~mp~~r~~--~~~~~~~g--~IYviGG~~~~~~~~~~~~~~~~~~~ 425 (557)
T PHA02713 352 DTIYAIGGQNGTNVERTIECYTMGDDKWK--MLPDMPIALSS--YGMCVLDQ--YIYIIGGRTEHIDYTSVHHMNSIDME 425 (557)
T ss_pred CEEEEECCcCCCCCCceEEEEECCCCeEE--ECCCCCccccc--ccEEEECC--EEEEEeCCCccccccccccccccccc
Confidence 66556666553 3788887765321 11111111111 11222244 344455543
Q ss_pred ------CeEEEEeCCCCce--EEEEcCCCCCEEEEEEcCCCCEEEEEeCC------CeEEEEEeeC-CeE--EEEEeccC
Q 003579 161 ------GSLQLWNISTKKK--LYEFKGWGSSISSCVSSPALDVVAVGCSD------GKIHVHNVRY-DEE--LVTFTHSM 223 (809)
Q Consensus 161 ------g~i~lwd~~~~~~--~~~~~~~~~~I~~l~~sp~~~~la~g~~d------g~i~iwd~~~-~~~--~~~~~~~~ 223 (809)
..+..||..+.+= +..+.. ......+..-+++..++|+.+ ..+..||..+ ++- +..+...
T Consensus 426 ~~~~~~~~ve~YDP~td~W~~v~~m~~--~r~~~~~~~~~~~IYv~GG~~~~~~~~~~ve~Ydp~~~~~W~~~~~m~~~- 502 (557)
T PHA02713 426 EDTHSSNKVIRYDTVNNIWETLPNFWT--GTIRPGVVSHKDDIYVVCDIKDEKNVKTCIFRYNTNTYNGWELITTTESR- 502 (557)
T ss_pred ccccccceEEEECCCCCeEeecCCCCc--ccccCcEEEECCEEEEEeCCCCCCccceeEEEecCCCCCCeeEccccCcc-
Confidence 2467777766532 111111 111111223345666667654 2467899887 443 2333221
Q ss_pred CCcEEEEEEecCCCCEEEEEcCCC--cEEEEECCCceeeeee
Q 003579 224 RGAVTALAFSSDGQPLLASGASSG--VISIWNLEKRRLQSVI 263 (809)
Q Consensus 224 ~~~V~~l~fs~dg~~~lasg~~dg--~I~iwdl~~~~~~~~~ 263 (809)
........+ +|+ +.++|+.+| .+..||..+.+-...-
T Consensus 503 r~~~~~~~~--~~~-iyv~Gg~~~~~~~e~yd~~~~~W~~~~ 541 (557)
T PHA02713 503 LSALHTILH--DNT-IMMLHCYESYMLQDTFNVYTYEWNHIC 541 (557)
T ss_pred cccceeEEE--CCE-EEEEeeecceeehhhcCcccccccchh
Confidence 122222222 566 888998887 7778888777654433
No 412
>TIGR02604 Piru_Ver_Nterm putative membrane-bound dehydrogenase domain. All proteins that score above the trusted cutoff score of 45 to this model are large proteins of either Pirellula sp. 1 or Verrucomicrobium spinosum. These proteins all contain, in addition to this domain, several hundred residues of highly variable sequence, and then a well-conserved C-terminal domain (TIGR02603) that features a putative cytochrome c-type heme binding motif CXXCH. The membrane-bound L-sorbosone dehydrogenase from Acetobacter liquefaciens (Gluconacetobacter liquefaciens) is homologous to this domain but lacks additional sequence regions shared by members of this family and belongs to a different clade of the larger family of homologs. It and its closely related homologs are excluded from the this model by scoring between the trusted (45) and noise (18) cutoffs.
Probab=96.00 E-value=0.28 Score=52.24 Aligned_cols=142 Identities=14% Similarity=0.141 Sum_probs=82.8
Q ss_pred ccEEEEEEcCCCCEEEEEe-----------CcC-eEEEEECCC--Cce--eeeeec-CCCeEEEEEeeCCCEEEEEeCCC
Q 003579 475 GEVVGVACDSTNTLMISAG-----------YHG-DIKVWDFKG--RDL--KSRWEV-GCSLVKIVYHRVNGLLATVADDL 537 (809)
Q Consensus 475 ~~v~~l~~~~~~~~l~s~~-----------~dg-~i~iwd~~~--~~~--~~~~~~-~~~i~~~~~s~~~~~la~~~~d~ 537 (809)
.....++|+++|+++++.. ..+ .|.+++-.. ++. ...+.. -.....+++.+++ |.+++...
T Consensus 14 ~~P~~ia~d~~G~l~V~e~~~y~~~~~~~~~~~~rI~~l~d~dgdG~~d~~~vfa~~l~~p~Gi~~~~~G--lyV~~~~~ 91 (367)
T TIGR02604 14 RNPIAVCFDERGRLWVAEGITYSRPAGRQGPLGDRILILEDADGDGKYDKSNVFAEELSMVTGLAVAVGG--VYVATPPD 91 (367)
T ss_pred CCCceeeECCCCCEEEEeCCcCCCCCCCCCCCCCEEEEEEcCCCCCCcceeEEeecCCCCccceeEecCC--EEEeCCCe
Confidence 4567899999999887753 223 677776442 322 122222 2456889999888 44444444
Q ss_pred eEEEEEcCC-------CeE-EEEEec----CCCCeeeEEECCCCCEEEEEeCC-------------------CeEEEEEc
Q 003579 538 VIRLFDVVA-------LRM-VRKFEG----HTDRITDFCFSEDGKWLLSSGMD-------------------GSLRIWDV 586 (809)
Q Consensus 538 ~I~v~d~~~-------~~~-~~~~~~----h~~~I~~l~fspdg~~l~s~s~D-------------------~~I~vwd~ 586 (809)
..++.|... .+. +..+.. +......++|.|||++.++-+.. |.|.-+|.
T Consensus 92 i~~~~d~~gdg~ad~~~~~l~~~~~~~~~~~~~~~~~l~~gpDG~LYv~~G~~~~~~~~~~~~~~~~~~~~~g~i~r~~p 171 (367)
T TIGR02604 92 ILFLRDKDGDDKADGEREVLLSGFGGQINNHHHSLNSLAWGPDGWLYFNHGNTLASKVTRPGTSDESRQGLGGGLFRYNP 171 (367)
T ss_pred EEEEeCCCCCCCCCCccEEEEEccCCCCCcccccccCceECCCCCEEEecccCCCceeccCCCccCcccccCceEEEEec
Confidence 333445432 122 222322 23457889999999877655421 34555555
Q ss_pred CCccEEEEee-eCcceEEEEEcCCCCeEEEEEeC
Q 003579 587 ILARQIDAIH-VDVSITALSLSPNMDVLATAHVD 619 (809)
Q Consensus 587 ~~~~~i~~~~-~~~~v~~l~~spdg~~lat~~~d 619 (809)
.+++. ..+. .......++|+|+|+++++-..+
T Consensus 172 dg~~~-e~~a~G~rnp~Gl~~d~~G~l~~tdn~~ 204 (367)
T TIGR02604 172 DGGKL-RVVAHGFQNPYGHSVDSWGDVFFCDNDD 204 (367)
T ss_pred CCCeE-EEEecCcCCCccceECCCCCEEEEccCC
Confidence 54443 3332 33347899999999988775543
No 413
>PRK13684 Ycf48-like protein; Provisional
Probab=95.99 E-value=2.5 Score=44.20 Aligned_cols=272 Identities=10% Similarity=0.039 Sum_probs=131.9
Q ss_pred CCCcEEEEEeCCeEEEEECCeEEEEE---CCeeEEE----EccccccEEEEEEeCCEEEEEeCCCcEEEEEcCC-Ccccc
Q 003579 56 PKKIRALASYRDYTFAAYGNHIAVVK---RAHQVAT----WSRHSAKVNLLLLFGEHILSIDIDGNMFIWAFKG-IEENL 127 (809)
Q Consensus 56 ~~~I~~la~~~~~~~~a~g~~i~vw~---~~~~~~~----~~~h~~~V~~l~~~g~~l~s~~~dg~i~vWd~~~-~~~~~ 127 (809)
...+.+|+|..+..-.|.|..=.||. -++-=.. +.....++.++.+.++....++..|.|. .... ++...
T Consensus 45 ~~~l~~v~F~d~~~g~avG~~G~il~T~DgG~tW~~~~~~~~~~~~~l~~v~~~~~~~~~~G~~g~i~--~S~DgG~tW~ 122 (334)
T PRK13684 45 EANLLDIAFTDPNHGWLVGSNRTLLETNDGGETWEERSLDLPEENFRLISISFKGDEGWIVGQPSLLL--HTTDGGKNWT 122 (334)
T ss_pred CCceEEEEEeCCCcEEEEECCCEEEEEcCCCCCceECccCCcccccceeeeEEcCCcEEEeCCCceEE--EECCCCCCCe
Confidence 56788888876545445555534442 2221111 1112334667777655444445555433 3333 33211
Q ss_pred ceeeeE-EcCCccccEEEEeCCCCCCEEEEEeCCCeEEEEeCCCCceEEEEc-CCCCCEEEEEEcCCCCEEEEEeCCCeE
Q 003579 128 APVGHV-KLDDKFTPTCIMHPDTYLNKVIVGSQEGSLQLWNISTKKKLYEFK-GWGSSISSCVSSPALDVVAVGCSDGKI 205 (809)
Q Consensus 128 ~~~~~~-~~~~~~~~~~~~~p~~~~~~l~~~~~dg~i~lwd~~~~~~~~~~~-~~~~~I~~l~~sp~~~~la~g~~dg~i 205 (809)
.+..- ..........++.+ . .+..++..|.|..=+ ..|+.-..+. .....+..+.+.|++.+++++. .|.+
T Consensus 123 -~~~~~~~~~~~~~~i~~~~~-~---~~~~~g~~G~i~~S~-DgG~tW~~~~~~~~g~~~~i~~~~~g~~v~~g~-~G~i 195 (334)
T PRK13684 123 -RIPLSEKLPGSPYLITALGP-G---TAEMATNVGAIYRTT-DGGKNWEALVEDAAGVVRNLRRSPDGKYVAVSS-RGNF 195 (334)
T ss_pred -EccCCcCCCCCceEEEEECC-C---cceeeeccceEEEEC-CCCCCceeCcCCCcceEEEEEECCCCeEEEEeC-CceE
Confidence 11100 01111111122222 2 233334445443222 2333322222 2246788999999987776665 4544
Q ss_pred EEEEeeCCeEEEEEeccCCCcEEEEEEecCCCCEEEEEcCCCcEEEEECCCceeeeeeec---ccccceEEEEEecCCCE
Q 003579 206 HVHNVRYDEELVTFTHSMRGAVTALAFSSDGQPLLASGASSGVISIWNLEKRRLQSVIRE---AHDNAIISLHFFANEPV 282 (809)
Q Consensus 206 ~iwd~~~~~~~~~~~~~~~~~V~~l~fs~dg~~~lasg~~dg~I~iwdl~~~~~~~~~~~---~h~~~V~~l~~~~~~~~ 282 (809)
..-.-..++.-..........++++.+.++++ ++++| ..|.+++=..+.+..-..... .....+.++.+.+++..
T Consensus 196 ~~s~~~gg~tW~~~~~~~~~~l~~i~~~~~g~-~~~vg-~~G~~~~~s~d~G~sW~~~~~~~~~~~~~l~~v~~~~~~~~ 273 (334)
T PRK13684 196 YSTWEPGQTAWTPHQRNSSRRLQSMGFQPDGN-LWMLA-RGGQIRFNDPDDLESWSKPIIPEITNGYGYLDLAYRTPGEI 273 (334)
T ss_pred EEEcCCCCCeEEEeeCCCcccceeeeEcCCCC-EEEEe-cCCEEEEccCCCCCccccccCCccccccceeeEEEcCCCCE
Confidence 32111222333333334456899999999998 55555 467665433344432221110 12245788899987765
Q ss_pred EEEEcCCCcEEEEEeeCCCCCceeEEeccCCCCCCeeEEEecCCCEEEEEECCCCEEEEE
Q 003579 283 LMSASADNSIKMWIFDTTDGDPRLLRFRSGHSAPPLCIRFYANGRHILSAGQDRAFRLFS 342 (809)
Q Consensus 283 l~s~s~d~~i~vw~~~~~~~~~~~~~~~~~h~~~v~~i~~~~~~~~l~s~~~dg~i~~wd 342 (809)
++ ++.+|.+.. ..+.. ..++......+-....+.+.|..+++. +..+..|.|..++
T Consensus 274 ~~-~G~~G~v~~-S~d~G-~tW~~~~~~~~~~~~~~~~~~~~~~~~-~~~G~~G~il~~~ 329 (334)
T PRK13684 274 WA-GGGNGTLLV-SKDGG-KTWEKDPVGEEVPSNFYKIVFLDPEKG-FVLGQRGVLLRYV 329 (334)
T ss_pred EE-EcCCCeEEE-eCCCC-CCCeECCcCCCCCcceEEEEEeCCCce-EEECCCceEEEec
Confidence 54 555675543 22222 222332221222345777888766655 4456678777665
No 414
>TIGR02604 Piru_Ver_Nterm putative membrane-bound dehydrogenase domain. All proteins that score above the trusted cutoff score of 45 to this model are large proteins of either Pirellula sp. 1 or Verrucomicrobium spinosum. These proteins all contain, in addition to this domain, several hundred residues of highly variable sequence, and then a well-conserved C-terminal domain (TIGR02603) that features a putative cytochrome c-type heme binding motif CXXCH. The membrane-bound L-sorbosone dehydrogenase from Acetobacter liquefaciens (Gluconacetobacter liquefaciens) is homologous to this domain but lacks additional sequence regions shared by members of this family and belongs to a different clade of the larger family of homologs. It and its closely related homologs are excluded from the this model by scoring between the trusted (45) and noise (18) cutoffs.
Probab=95.89 E-value=3 Score=44.36 Aligned_cols=65 Identities=11% Similarity=0.013 Sum_probs=35.2
Q ss_pred cceEEEEEecCCCEEEEEcC-----------CC-cEEEEEeeCCCCCceeEEeccCCCCCCeeEEEecCCCEEEEEECC
Q 003579 269 NAIISLHFFANEPVLMSASA-----------DN-SIKMWIFDTTDGDPRLLRFRSGHSAPPLCIRFYANGRHILSAGQD 335 (809)
Q Consensus 269 ~~V~~l~~~~~~~~l~s~s~-----------d~-~i~vw~~~~~~~~~~~~~~~~~h~~~v~~i~~~~~~~~l~s~~~d 335 (809)
.....|+|.++|+++++-.. .+ .|.+++-...++.......+......+..+++.++| |+++...
T Consensus 14 ~~P~~ia~d~~G~l~V~e~~~y~~~~~~~~~~~~rI~~l~d~dgdG~~d~~~vfa~~l~~p~Gi~~~~~G--lyV~~~~ 90 (367)
T TIGR02604 14 RNPIAVCFDERGRLWVAEGITYSRPAGRQGPLGDRILILEDADGDGKYDKSNVFAEELSMVTGLAVAVGG--VYVATPP 90 (367)
T ss_pred CCCceeeECCCCCEEEEeCCcCCCCCCCCCCCCCEEEEEEcCCCCCCcceeEEeecCCCCccceeEecCC--EEEeCCC
Confidence 34667888888887766431 12 455553222233322223333334467889999888 4444444
No 415
>KOG4441 consensus Proteins containing BTB/POZ and Kelch domains, involved in regulatory/signal transduction processes [Signal transduction mechanisms; General function prediction only]
Probab=95.88 E-value=0.82 Score=51.50 Aligned_cols=96 Identities=11% Similarity=0.118 Sum_probs=53.8
Q ss_pred EEEEEcCC------CcEEEEECCCceeeeeeecccccceEEEEEecCCCEEEEEcCC-Cc---EEEEEeeCCCCCceeEE
Q 003579 239 LLASGASS------GVISIWNLEKRRLQSVIREAHDNAIISLHFFANEPVLMSASAD-NS---IKMWIFDTTDGDPRLLR 308 (809)
Q Consensus 239 ~lasg~~d------g~I~iwdl~~~~~~~~~~~~h~~~V~~l~~~~~~~~l~s~s~d-~~---i~vw~~~~~~~~~~~~~ 308 (809)
+++.|+.. ..+..+|..++.-.......+...-.+++.. ++.+.++||.| |. -.+|.++.....+..+.
T Consensus 287 l~~vGG~~~~~~~~~~ve~yd~~~~~w~~~a~m~~~r~~~~~~~~-~~~lYv~GG~~~~~~~l~~ve~YD~~~~~W~~~a 365 (571)
T KOG4441|consen 287 LVAVGGYNRQGQSLRSVECYDPKTNEWSSLAPMPSPRCRVGVAVL-NGKLYVVGGYDSGSDRLSSVERYDPRTNQWTPVA 365 (571)
T ss_pred EEEECCCCCCCcccceeEEecCCcCcEeecCCCCcccccccEEEE-CCEEEEEccccCCCcccceEEEecCCCCceeccC
Confidence 77777766 3678899888744333332233344455555 44677888888 32 23555565555554433
Q ss_pred eccCCCCCCeeEEEecCCCEEEEEECCCC
Q 003579 309 FRSGHSAPPLCIRFYANGRHILSAGQDRA 337 (809)
Q Consensus 309 ~~~~h~~~v~~i~~~~~~~~l~s~~~dg~ 337 (809)
.............. +|...++||.||.
T Consensus 366 ~M~~~R~~~~v~~l--~g~iYavGG~dg~ 392 (571)
T KOG4441|consen 366 PMNTKRSDFGVAVL--DGKLYAVGGFDGE 392 (571)
T ss_pred CccCccccceeEEE--CCEEEEEeccccc
Confidence 33222222211111 6778888988864
No 416
>PF12234 Rav1p_C: RAVE protein 1 C terminal; InterPro: IPR022033 This domain family is found in eukaryotes, and is typically between 621 and 644 amino acids in length. This family is the C-terminal region of the protein RAVE (regulator of the ATPase of vacuolar and endosomal membranes). Rav1p is involved in regulating the glucose dependent assembly and disassembly of vacuolar ATPase V1 and V0 subunits.
Probab=95.58 E-value=0.4 Score=53.37 Aligned_cols=112 Identities=11% Similarity=0.120 Sum_probs=76.7
Q ss_pred CCeEEEEEeeCCCEEEEEeCCCeEEEEEcCCCeEEEEEe-cCCCCeeeEEE--CCCCCEEEEEeCCCeEEEEEc------
Q 003579 516 CSLVKIVYHRVNGLLATVADDLVIRLFDVVALRMVRKFE-GHTDRITDFCF--SEDGKWLLSSGMDGSLRIWDV------ 586 (809)
Q Consensus 516 ~~i~~~~~s~~~~~la~~~~d~~I~v~d~~~~~~~~~~~-~h~~~I~~l~f--spdg~~l~s~s~D~~I~vwd~------ 586 (809)
..+.-+.-+.-++..++-++...+.|||...+....+-. ...+.|.++.| .|||+.+++.|..+.|.+|--
T Consensus 30 ~~~~li~gss~~k~a~V~~~~~~LtIWD~~~~~lE~~~~f~~~~~I~dLDWtst~d~qsiLaVGf~~~v~l~~Q~R~dy~ 109 (631)
T PF12234_consen 30 SNPSLISGSSIKKIAVVDSSRSELTIWDTRSGVLEYEESFSEDDPIRDLDWTSTPDGQSILAVGFPHHVLLYTQLRYDYT 109 (631)
T ss_pred CCcceEeecccCcEEEEECCCCEEEEEEcCCcEEEEeeeecCCCceeeceeeecCCCCEEEEEEcCcEEEEEEccchhhh
Confidence 344445555555555555566789999999887533322 35688999988 469999999999999999843
Q ss_pred ---CCccEEEEeee----CcceEEEEEcCCCCeEEEEEeCCCeEEEeecCc
Q 003579 587 ---ILARQIDAIHV----DVSITALSLSPNMDVLATAHVDQNGVYLWVNRC 630 (809)
Q Consensus 587 ---~~~~~i~~~~~----~~~v~~l~~spdg~~lat~~~d~~~i~lW~~~~ 630 (809)
++-..+..+.. +.+|.+..|.++|.+++.++. .++|++-.-
T Consensus 110 ~~~p~w~~i~~i~i~~~T~h~Igds~Wl~~G~LvV~sGN---qlfv~dk~~ 157 (631)
T PF12234_consen 110 NKGPSWAPIRKIDISSHTPHPIGDSIWLKDGTLVVGSGN---QLFVFDKWL 157 (631)
T ss_pred cCCcccceeEEEEeecCCCCCccceeEecCCeEEEEeCC---EEEEECCCc
Confidence 22234444432 246999999999977766532 488887543
No 417
>PF07995 GSDH: Glucose / Sorbosone dehydrogenase; InterPro: IPR012938 Proteins containing this domain are thought to be glucose/sorbosone dehydrogenases. The best characterised of these proteins is soluble glucose dehydrogenase (P13650 from SWISSPROT) from Acinetobacter calcoaceticus, which oxidises glucose to gluconolactone. The enzyme is a calcium-dependent homodimer which uses PQQ as a cofactor [].; GO: 0016901 oxidoreductase activity, acting on the CH-OH group of donors, quinone or similar compound as acceptor, 0048038 quinone binding, 0005975 carbohydrate metabolic process; PDB: 2ISM_A 2WG3_D 3HO5_A 3HO4_A 3HO3_A 2WFT_A 2WG4_B 2WFX_B 1CRU_A 1CQ1_B ....
Probab=95.57 E-value=3.6 Score=42.96 Aligned_cols=68 Identities=12% Similarity=0.156 Sum_probs=41.7
Q ss_pred CCCCeeeEEECC-------CCCEEEEEeCCCeEEEEEcCCccEEE-Eee----eCcceEEEEEcCCCCeEEEEEeCCCeE
Q 003579 556 HTDRITDFCFSE-------DGKWLLSSGMDGSLRIWDVILARQID-AIH----VDVSITALSLSPNMDVLATAHVDQNGV 623 (809)
Q Consensus 556 h~~~I~~l~fsp-------dg~~l~s~s~D~~I~vwd~~~~~~i~-~~~----~~~~v~~l~~spdg~~lat~~~d~~~i 623 (809)
+...++.+.|-. +|.++++.-..+.|....+..+..+. .-. ....+..+++.|||.+.++...++. |
T Consensus 251 ~~~ap~G~~~y~g~~fp~~~g~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~r~~~v~~~pDG~Lyv~~d~~G~-i 329 (331)
T PF07995_consen 251 PHSAPTGIIFYRGSAFPEYRGDLFVADYGGGRIWRLDLDEDGSVTEEEEFLGGFGGRPRDVAQGPDGALYVSDDSDGK-I 329 (331)
T ss_dssp TT--EEEEEEE-SSSSGGGTTEEEEEETTTTEEEEEEEETTEEEEEEEEECTTSSS-EEEEEEETTSEEEEEE-TTTT-E
T ss_pred CccccCceEEECCccCccccCcEEEecCCCCEEEEEeeecCCCccceEEccccCCCCceEEEEcCCCeEEEEECCCCe-E
Confidence 335567777753 45567666666778877876443332 211 1225999999999999988887774 5
Q ss_pred E
Q 003579 624 Y 624 (809)
Q Consensus 624 ~ 624 (809)
+
T Consensus 330 y 330 (331)
T PF07995_consen 330 Y 330 (331)
T ss_dssp E
T ss_pred e
Confidence 3
No 418
>PF08728 CRT10: CRT10; InterPro: IPR014839 CRT10 is a transcriptional regulator of ribonucleotide reductase (RNR) genes []. RNR catalyses the rate limiting step in dNTP synthesis. Mutations in CRT10 have been shown to enhance hydroxyurea resistance [].
Probab=95.43 E-value=0.77 Score=51.68 Aligned_cols=150 Identities=13% Similarity=0.194 Sum_probs=97.7
Q ss_pred CCEEEEEeCCCcEEEEECCCCceeee------eeCcccc--------cccCccccEEEEEEcC--CCCEEEEEeCcCeEE
Q 003579 436 GNFAVLGTAGGWIERFNLQSGISRGS------YLDMSER--------SNYAHNGEVVGVACDS--TNTLMISAGYHGDIK 499 (809)
Q Consensus 436 g~~l~~g~~~g~i~i~~~~~~~~~~~------~~~~~~~--------~~~~h~~~v~~l~~~~--~~~~l~s~~~dg~i~ 499 (809)
+++++++. .+.|.+|+......... +...+.. ........|+.+.+.. +...|+.|..||.|.
T Consensus 49 ~n~LFiA~-~s~I~Vy~~d~l~~~p~~~p~~~~~t~p~~~~~~D~~~s~~p~PHtIN~i~v~~lg~~EVLl~c~DdG~V~ 127 (717)
T PF08728_consen 49 RNLLFIAY-QSEIYVYDPDGLTQLPSRKPCLRFDTKPEFTSTPDRLISTWPFPHTINFIKVGDLGGEEVLLLCTDDGDVL 127 (717)
T ss_pred CCEEEEEE-CCEEEEEecCCcccccccccccccccCccccccccccccCCCCCceeeEEEecccCCeeEEEEEecCCeEE
Confidence 77888865 78899999865443221 1100000 0011234466666554 447899999999999
Q ss_pred EEECCC-------C-------------ceeeeeecCCCeEEEEEe--eCCCEEEEEeCCCeEEEEEcCCC--eE-EEEEe
Q 003579 500 VWDFKG-------R-------------DLKSRWEVGCSLVKIVYH--RVNGLLATVADDLVIRLFDVVAL--RM-VRKFE 554 (809)
Q Consensus 500 iwd~~~-------~-------------~~~~~~~~~~~i~~~~~s--~~~~~la~~~~d~~I~v~d~~~~--~~-~~~~~ 554 (809)
+|.+++ . ++...+..+...++++++ ...++||+++....|.||-.... +. ...-.
T Consensus 128 ~Yyt~~I~~~i~~~~~~~~~~~~r~~i~P~f~~~v~~SaWGLdIh~~~~~rlIAVSsNs~~VTVFaf~l~~~r~~~~~s~ 207 (717)
T PF08728_consen 128 AYYTETIIEAIERFSEDNDSGFSRLKIKPFFHLRVGASAWGLDIHDYKKSRLIAVSSNSQEVTVFAFALVDERFYHVPSH 207 (717)
T ss_pred EEEHHHHHHHHHhhccccccccccccCCCCeEeecCCceeEEEEEecCcceEEEEecCCceEEEEEEecccccccccccc
Confidence 996521 0 122334456789999999 88899999999998888865432 11 11111
Q ss_pred cCCCCeeeEEECCCC---C---EEEEEeCCCeEEEEEc
Q 003579 555 GHTDRITDFCFSEDG---K---WLLSSGMDGSLRIWDV 586 (809)
Q Consensus 555 ~h~~~I~~l~fspdg---~---~l~s~s~D~~I~vwd~ 586 (809)
.|...|-+++|-++. . +|++++-.|.+.+|++
T Consensus 208 ~~~hNIP~VSFl~~~~d~~G~v~v~a~dI~G~v~~~~I 245 (717)
T PF08728_consen 208 QHSHNIPNVSFLDDDLDPNGHVKVVATDISGEVWTFKI 245 (717)
T ss_pred ccccCCCeeEeecCCCCCccceEEEEEeccCcEEEEEE
Confidence 256779999997643 2 7888999999999888
No 419
>KOG1916 consensus Nuclear protein, contains WD40 repeats [General function prediction only]
Probab=95.35 E-value=0.013 Score=64.83 Aligned_cols=157 Identities=17% Similarity=0.203 Sum_probs=97.4
Q ss_pred CccccEEEEEEcCCC-CEEEEEeCcCeEEEEECC--CCceeeeeec------CCCeEEEEEee---CCCEEEEEeCCCeE
Q 003579 472 AHNGEVVGVACDSTN-TLMISAGYHGDIKVWDFK--GRDLKSRWEV------GCSLVKIVYHR---VNGLLATVADDLVI 539 (809)
Q Consensus 472 ~h~~~v~~l~~~~~~-~~l~s~~~dg~i~iwd~~--~~~~~~~~~~------~~~i~~~~~s~---~~~~la~~~~d~~I 539 (809)
+..+.|-.++|.... ..+. -.-|.+.+|++. .|++...+.. +..+..+.|.| +..++.++..++.|
T Consensus 130 gf~G~v~dl~fah~~~pk~~--~~vg~lfVy~vd~l~G~iq~~l~v~~~~p~gs~~~~V~wcp~~~~~~~ic~~~~~~~i 207 (1283)
T KOG1916|consen 130 GFPGGVGDLQFAHTKCPKGR--RLVGELFVYDVDVLQGEIQPQLEVTPITPYGSDPQLVSWCPIAVNKVYICYGLKGGEI 207 (1283)
T ss_pred cCCCCcccccccccCChHHH--HHhhhhheeehHhhccccccceEEeecCcCCCCcceeeecccccccceeeeccCCCce
Confidence 666777777775322 1111 233678889875 4544443322 24445555554 56788888889999
Q ss_pred EEEEcCCCeEEEEEecCCCCeeeEE-----------ECCCCCEEEEEeCCCeEEEEEcC-Cc----cEEEEeeeCcc---
Q 003579 540 RLFDVVALRMVRKFEGHTDRITDFC-----------FSEDGKWLLSSGMDGSLRIWDVI-LA----RQIDAIHVDVS--- 600 (809)
Q Consensus 540 ~v~d~~~~~~~~~~~~h~~~I~~l~-----------fspdg~~l~s~s~D~~I~vwd~~-~~----~~i~~~~~~~~--- 600 (809)
++....+... .-+.+|..++++++ .||||..++.++.||.++.|-+. +| +|+..++.|..
T Consensus 208 ~lL~~~ra~~-~l~rsHs~~~~d~a~~~~g~~~l~~lSpDGtv~a~a~~dG~v~f~Qiyi~g~~~~rclhewkphd~~p~ 286 (1283)
T KOG1916|consen 208 RLLNINRALR-SLFRSHSQRVTDMAFFAEGVLKLASLSPDGTVFAWAISDGSVGFYQIYITGKIVHRCLHEWKPHDKHPR 286 (1283)
T ss_pred eEeeechHHH-HHHHhcCCCcccHHHHhhchhhheeeCCCCcEEEEeecCCccceeeeeeeccccHhhhhccCCCCCCCc
Confidence 9887765432 44566888777665 58999999999999999988653 22 33444443432
Q ss_pred eEEEEEcCC---------CCeEEEEEeCCCeEEEeecCccc
Q 003579 601 ITALSLSPN---------MDVLATAHVDQNGVYLWVNRCMF 632 (809)
Q Consensus 601 v~~l~~spd---------g~~lat~~~d~~~i~lW~~~~~~ 632 (809)
|..+ +... -.+++++..-+..+++|.-...-
T Consensus 287 vC~l-c~~~~~~~v~i~~w~~~Itttd~nre~k~w~~a~w~ 326 (1283)
T KOG1916|consen 287 VCWL-CHKQEILVVSIGKWVLRITTTDVNREEKFWAEAPWQ 326 (1283)
T ss_pred eeee-eccccccCCccceeEEEEecccCCcceeEeeccchh
Confidence 3333 3321 23577777767789999864433
No 420
>PF15390 DUF4613: Domain of unknown function (DUF4613)
Probab=95.31 E-value=5.4 Score=43.31 Aligned_cols=150 Identities=13% Similarity=0.136 Sum_probs=87.6
Q ss_pred CCEEEEEEcCCCCEEEEEe--CCCeEEEEEeeCCeEEEEEeccCCCcEEEEEEecCC----CCEEEEEcCCCcEEEEECC
Q 003579 182 SSISSCVSSPALDVVAVGC--SDGKIHVHNVRYDEELVTFTHSMRGAVTALAFSSDG----QPLLASGASSGVISIWNLE 255 (809)
Q Consensus 182 ~~I~~l~~sp~~~~la~g~--~dg~i~iwd~~~~~~~~~~~~~~~~~V~~l~fs~dg----~~~lasg~~dg~I~iwdl~ 255 (809)
.+|..++|..-.+++.+.- .+|.+++=| .+.+..| ..|..++|.|-+ ..+||+- ....|.+|.+.
T Consensus 20 HPvhGlaWTDGkqVvLT~L~l~~gE~kfGd---s~viGqF-----EhV~GlsW~P~~~~~~paLLAVQ-HkkhVtVWqL~ 90 (671)
T PF15390_consen 20 HPVHGLAWTDGKQVVLTDLQLHNGEPKFGD---SKVIGQF-----EHVHGLSWAPPCTADTPALLAVQ-HKKHVTVWQLC 90 (671)
T ss_pred ccccceEecCCCEEEEEeeeeeCCccccCC---ccEeecc-----ceeeeeeecCcccCCCCceEEEe-ccceEEEEEec
Confidence 4677888875545555543 234433322 1233333 358999999853 3356654 57799999875
Q ss_pred C-----ceeeeeeeccc--cc--ceEEEEEecCCCEEEEEcCCCcEEEEEeeCCCCCceeEEeccCCCCCCeeEEEecCC
Q 003579 256 K-----RRLQSVIREAH--DN--AIISLHFFANEPVLMSASADNSIKMWIFDTTDGDPRLLRFRSGHSAPPLCIRFYANG 326 (809)
Q Consensus 256 ~-----~~~~~~~~~~h--~~--~V~~l~~~~~~~~l~s~s~d~~i~vw~~~~~~~~~~~~~~~~~h~~~v~~i~~~~~~ 326 (809)
- ++.+....-.. .- --.++.|+|....|+.-.....-.+.++...+. +..... ...+-|.|.+|..||
T Consensus 91 ~s~~e~~K~l~sQtcEi~e~~pvLpQGCVWHPk~~iL~VLT~~dvSV~~sV~~d~s--rVkaDi-~~~G~IhCACWT~DG 167 (671)
T PF15390_consen 91 PSTTERNKLLMSQTCEIREPFPVLPQGCVWHPKKAILTVLTARDVSVLPSVHCDSS--RVKADI-KTSGLIHCACWTKDG 167 (671)
T ss_pred cCccccccceeeeeeeccCCcccCCCcccccCCCceEEEEecCceeEeeeeeeCCc--eEEEec-cCCceEEEEEecCcC
Confidence 2 23322221011 11 134678999998887766554444555554432 333333 556779999999999
Q ss_pred CEEEEEECC-CCEEEEEe
Q 003579 327 RHILSAGQD-RAFRLFSV 343 (809)
Q Consensus 327 ~~l~s~~~d-g~i~~wd~ 343 (809)
+.|+.+-.. =.-++||-
T Consensus 168 ~RLVVAvGSsLHSyiWd~ 185 (671)
T PF15390_consen 168 QRLVVAVGSSLHSYIWDS 185 (671)
T ss_pred CEEEEEeCCeEEEEEecC
Confidence 998876443 23466764
No 421
>PF12894 Apc4_WD40: Anaphase-promoting complex subunit 4 WD40 domain
Probab=95.26 E-value=0.059 Score=37.15 Aligned_cols=36 Identities=8% Similarity=0.122 Sum_probs=30.8
Q ss_pred eecCCCeEEEEEeeCCCEEEEEeCCCeEEEEEcCCCe
Q 003579 512 WEVGCSLVKIVYHRVNGLLATVADDLVIRLFDVVALR 548 (809)
Q Consensus 512 ~~~~~~i~~~~~s~~~~~la~~~~d~~I~v~d~~~~~ 548 (809)
......|..++|+|...++|.+..+|.|.++.+ +++
T Consensus 8 k~l~~~v~~~~w~P~mdLiA~~t~~g~v~v~Rl-~~q 43 (47)
T PF12894_consen 8 KNLPSRVSCMSWCPTMDLIALGTEDGEVLVYRL-NWQ 43 (47)
T ss_pred cCCCCcEEEEEECCCCCEEEEEECCCeEEEEEC-CCc
Confidence 344577999999999999999999999999988 443
No 422
>PRK13684 Ycf48-like protein; Provisional
Probab=95.23 E-value=4.7 Score=42.18 Aligned_cols=149 Identities=13% Similarity=0.086 Sum_probs=85.4
Q ss_pred CCeEEEEEcCCCCEEEEEeCCCcEEEEECCCCceeeeeeCcccccccCccccEEEEEEcCCCCEEEEEeCcCeEEEEECC
Q 003579 425 TAVKACTISACGNFAVLGTAGGWIERFNLQSGISRGSYLDMSERSNYAHNGEVVGVACDSTNTLMISAGYHGDIKVWDFK 504 (809)
Q Consensus 425 ~~v~~v~~s~~g~~l~~g~~~g~i~i~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~l~s~~~dg~i~iwd~~ 504 (809)
..+..+.+.+++.++++|. .|.+..-.-..+..-.... ..-...++++.+.++++.++.+ ..|.+++=...
T Consensus 173 g~~~~i~~~~~g~~v~~g~-~G~i~~s~~~gg~tW~~~~-------~~~~~~l~~i~~~~~g~~~~vg-~~G~~~~~s~d 243 (334)
T PRK13684 173 GVVRNLRRSPDGKYVAVSS-RGNFYSTWEPGQTAWTPHQ-------RNSSRRLQSMGFQPDGNLWMLA-RGGQIRFNDPD 243 (334)
T ss_pred ceEEEEEECCCCeEEEEeC-CceEEEEcCCCCCeEEEee-------CCCcccceeeeEcCCCCEEEEe-cCCEEEEccCC
Confidence 5678888999887766554 4544432111222111111 1344678999999998876654 55776543334
Q ss_pred CCceeeeeec-----CCCeEEEEEeeCCCEEEEEeCCCeEEEEEcCCCeEEEEEe---cCCCCeeeEEECCCCCEEEEEe
Q 003579 505 GRDLKSRWEV-----GCSLVKIVYHRVNGLLATVADDLVIRLFDVVALRMVRKFE---GHTDRITDFCFSEDGKWLLSSG 576 (809)
Q Consensus 505 ~~~~~~~~~~-----~~~i~~~~~s~~~~~la~~~~d~~I~v~d~~~~~~~~~~~---~h~~~I~~l~fspdg~~l~s~s 576 (809)
.+..-..... ...+..+.+.+++..++++ .+|.+. .....++.-.... +-....+.+.|..+++.++ ++
T Consensus 244 ~G~sW~~~~~~~~~~~~~l~~v~~~~~~~~~~~G-~~G~v~-~S~d~G~tW~~~~~~~~~~~~~~~~~~~~~~~~~~-~G 320 (334)
T PRK13684 244 DLESWSKPIIPEITNGYGYLDLAYRTPGEIWAGG-GNGTLL-VSKDGGKTWEKDPVGEEVPSNFYKIVFLDPEKGFV-LG 320 (334)
T ss_pred CCCccccccCCccccccceeeEEEcCCCCEEEEc-CCCeEE-EeCCCCCCCeECCcCCCCCcceEEEEEeCCCceEE-EC
Confidence 4433222221 2457788899887766655 566554 3344444333332 2224577888887777666 45
Q ss_pred CCCeEEEEE
Q 003579 577 MDGSLRIWD 585 (809)
Q Consensus 577 ~D~~I~vwd 585 (809)
..|.|.-|+
T Consensus 321 ~~G~il~~~ 329 (334)
T PRK13684 321 QRGVLLRYV 329 (334)
T ss_pred CCceEEEec
Confidence 578887775
No 423
>COG3292 Predicted periplasmic ligand-binding sensor domain [Signal transduction mechanisms]
Probab=95.14 E-value=5.9 Score=42.79 Aligned_cols=475 Identities=14% Similarity=0.103 Sum_probs=217.5
Q ss_pred CCcEEEEEeCC-eEEEEECCeEEEEECCeeEEEEccccccEEEEEEeCCEEE-EEeCCCcEEEEEcCCCccccceeeeEE
Q 003579 57 KKIRALASYRD-YTFAAYGNHIAVVKRAHQVATWSRHSAKVNLLLLFGEHIL-SIDIDGNMFIWAFKGIEENLAPVGHVK 134 (809)
Q Consensus 57 ~~I~~la~~~~-~~~~a~g~~i~vw~~~~~~~~~~~h~~~V~~l~~~g~~l~-s~~~dg~i~vWd~~~~~~~~~~~~~~~ 134 (809)
.-|.+|+...| +.++|+-..+.-|+-..-...+.+| ++..+.+++..++ .....|.|.+=....-.. ....
T Consensus 40 nv~~~~~q~~dGylW~at~~G~vrY~g~~~f~vf~gn--~~~~ly~~gtr~Ll~s~~~gll~lga~~~~d~-----~q~y 112 (671)
T COG3292 40 NVVRAMLQDADGYLWLATSDGLVRYDGPNDFGVFPGN--SVLGLYPDGTRLLLVSSENGLLALGALGRRDF-----IQVY 112 (671)
T ss_pred HHHHHHhhccCCcEEEEecccEEEecCCcccccccCC--ceEEEecCcceEEeeeccchhhhhccccceec-----eeec
Confidence 45677777776 6777776666666543333445554 4677777665443 333444443333221111 1110
Q ss_pred cCCccccEEEEeCCCCC----CEEEEEeCCCeEEEEeCCCCceEEEEc--CCCCCEEEEEEcCCCCEEEEEeCCCeEEEE
Q 003579 135 LDDKFTPTCIMHPDTYL----NKVIVGSQEGSLQLWNISTKKKLYEFK--GWGSSISSCVSSPALDVVAVGCSDGKIHVH 208 (809)
Q Consensus 135 ~~~~~~~~~~~~p~~~~----~~l~~~~~dg~i~lwd~~~~~~~~~~~--~~~~~I~~l~~sp~~~~la~g~~dg~i~iw 208 (809)
-.+...+...|+.+-+ ..+-....+..+..-|....+.+.... .-..+|.++.+.-+| .+-+|+.|| +..|
T Consensus 113 -r~~~~~s~a~h~lt~lIddaqllw~~~~~~gV~~~d~lg~~~v~~~r~ll~d~~V~aLv~D~~g-~lWvgT~dG-L~~f 189 (671)
T COG3292 113 -RGGVAKSDALHELTALIDDAQLLWLHASVIGVDSADALGREAVKDVRPLLKDTPVVALVFDANG-RLWVGTPDG-LSYF 189 (671)
T ss_pred -ccceeeccCccccccccchhhhhhhccccCCccccccchhhhccCccccccCccceeeeeeccC-cEEEecCCc-ceEE
Confidence 1111112222222210 011111122223222322222221111 125678888888877 567788777 6778
Q ss_pred EeeCCeEEEEEeccCCCcEEEEEEecCCCCEEEEEcCCCcEEEEECCCceeeeeeecccccceEEEEEecCCCEEEEEcC
Q 003579 209 NVRYDEELVTFTHSMRGAVTALAFSSDGQPLLASGASSGVISIWNLEKRRLQSVIREAHDNAIISLHFFANEPVLMSASA 288 (809)
Q Consensus 209 d~~~~~~~~~~~~~~~~~V~~l~fs~dg~~~lasg~~dg~I~iwdl~~~~~~~~~~~~h~~~V~~l~~~~~~~~l~s~s~ 288 (809)
|..+++.+..-......+|..+.-+-.|+ |.+|+.+| |.+.+.+..+.......-..+.|..+.-..+| .+-.|+.
T Consensus 190 d~~~gkalql~s~~~dk~I~al~~d~qg~--LWVGTdqG-v~~~e~~G~~~sn~~~~lp~~~I~ll~qD~qG-~lWiGTe 265 (671)
T COG3292 190 DAGRGKALQLASPPLDKAINALIADVQGR--LWVGTDQG-VYLQEAEGWRASNWGPMLPSGNILLLVQDAQG-ELWIGTE 265 (671)
T ss_pred ccccceEEEcCCCcchhhHHHHHHHhcCc--EEEEeccc-eEEEchhhccccccCCCCcchheeeeecccCC-CEEEeec
Confidence 88888877776655446788888877887 77788665 77777665333222221122233333222222 3333444
Q ss_pred CCcEEEEEeeCCCCCc-eeEEeccCCCCCCeeEEEecCCCEEEEEECCCCEEEEEeeecccceecchhhHHHHHhhccch
Q 003579 289 DNSIKMWIFDTTDGDP-RLLRFRSGHSAPPLCIRFYANGRHILSAGQDRAFRLFSVIQDQQSRELSQRHVAKRARKLKMK 367 (809)
Q Consensus 289 d~~i~vw~~~~~~~~~-~~~~~~~~h~~~v~~i~~~~~~~~l~s~~~dg~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~ 367 (809)
.|- |....+.... .+.....--...|.++....+|. +-+++.+|.+++-...
T Consensus 266 nGl---~r~~l~rq~Lq~~~~~~~l~~S~vnsL~~D~dGs-LWv~t~~giv~~~~a~----------------------- 318 (671)
T COG3292 266 NGL---WRTRLPRQGLQIPLSKMHLGVSTVNSLWLDTDGS-LWVGTYGGIVRYLTAD----------------------- 318 (671)
T ss_pred ccc---eeEecCCCCccccccccCCccccccceeeccCCC-EeeeccCceEEEecch-----------------------
Confidence 332 2222221111 11111111122344454444553 4555555544432210
Q ss_pred hhhhccCceeEEeeccccccccceeEEeecCCceEEEEEeeeeeecceeeecCCCCCCCeEEEEEcCCCCEEEEEeCCCc
Q 003579 368 EEELKLKPVIAFDCAEIRERDWCNVVTCHMDTAQAYVWRLQNFVLGEHILRPCPENPTAVKACTISACGNFAVLGTAGGW 447 (809)
Q Consensus 368 ~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~v~~v~~s~~g~~l~~g~~~g~ 447 (809)
|-........ ++.......++..-.+..+-...+.|.
T Consensus 319 ---------------------w~~ma~in~~----------------------dG~v~~~~~~a~~ll~~~v~~~ns~g~ 355 (671)
T COG3292 319 ---------------------WKRMAVINDS----------------------DGGVSQYEAVAPALLSWGVRQLNSIGE 355 (671)
T ss_pred ---------------------hhheeeeecC----------------------CCchhhhhccCchhcccceeeccccce
Confidence 0000000000 000000011111112222233333344
Q ss_pred EEEEECCCCceeeeeeCcccccccCccccEEEEEEcCCCCEEEEEeCcCeEEEEECCC-Cceeeeeec--CCCeEEEEEe
Q 003579 448 IERFNLQSGISRGSYLDMSERSNYAHNGEVVGVACDSTNTLMISAGYHGDIKVWDFKG-RDLKSRWEV--GCSLVKIVYH 524 (809)
Q Consensus 448 i~i~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~l~s~~~dg~i~iwd~~~-~~~~~~~~~--~~~i~~~~~s 524 (809)
+.+-+-.+|....... ......|+.++++.++++-+ ++...-+..|+-++ +........ .+++..+.-.
T Consensus 356 L~van~stG~~v~sv~-------q~Rg~nit~~~~d~~g~lWl-gs~q~GLsrl~n~n~~avlde~agl~ss~V~aived 427 (671)
T COG3292 356 LMVANGSTGELVRSVH-------QLRGMNITTTLEDSRGRLWL-GSMQNGLSRLDNKNEWAVLDEDAGLPSSEVSAIVED 427 (671)
T ss_pred EEEecCCCCcEEEEee-------eccccccchhhhccCCcEEE-EecccchhhhccCCcccccccccCCcccceeeeeec
Confidence 4444555555444332 13345677777777555444 44443344555555 322222222 2778888888
Q ss_pred eCCCEEEEEeCCCeEEEEEcCCCeEEEEEe--cC---CCCeeeEEECCCCCEEEEEeCCCeEEEEEcCCccEEEEeeeCc
Q 003579 525 RVNGLLATVADDLVIRLFDVVALRMVRKFE--GH---TDRITDFCFSEDGKWLLSSGMDGSLRIWDVILARQIDAIHVDV 599 (809)
Q Consensus 525 ~~~~~la~~~~d~~I~v~d~~~~~~~~~~~--~h---~~~I~~l~fspdg~~l~s~s~D~~I~vwd~~~~~~i~~~~~~~ 599 (809)
|+++ |-.|+.+|.++. +.+.++....+. .| .+.|..+..-|+|+.-+.++ +| |..|+-......-.+....
T Consensus 428 ~dns-LWIGTs~Glvk~-~pe~~~v~n~ln~~~~~l~~s~~~~lg~~~~g~Lw~a~g-~g-va~~~sq~~~~~~~l~~~~ 503 (671)
T COG3292 428 PDNS-LWIGTSGGLVKR-DPESGRVLNLLNPGSHGLDGSRVEQLGLGPDGRLWLAAG-SG-VAAWESQRRMFVPILDLTG 503 (671)
T ss_pred CCCC-EEEeccCCeEec-CccccchhcccccccCcCCcchhhhhccCCCCceEEEec-ce-eeeeccccceecccccccc
Confidence 8888 777888876654 334433333222 22 24577889999998544332 44 6778765432222222211
Q ss_pred ceEEEEEcCCCCeEEEEEeCCCeEEEeecC
Q 003579 600 SITALSLSPNMDVLATAHVDQNGVYLWVNR 629 (809)
Q Consensus 600 ~v~~l~~spdg~~lat~~~d~~~i~lW~~~ 629 (809)
.-.-..+--.++++-.+-.-+ +.-|.+.
T Consensus 504 q~qy~f~~~~~d~vw~~~~Rg--~vr~r~s 531 (671)
T COG3292 504 QRQYSFVPVGGDEVWVHRLRG--LVRWRHS 531 (671)
T ss_pred eeeEEEEEccCceEeeeeece--eeeeccC
Confidence 111111333556665554333 5556554
No 424
>PRK10115 protease 2; Provisional
Probab=95.11 E-value=8.8 Score=44.61 Aligned_cols=59 Identities=14% Similarity=0.097 Sum_probs=38.5
Q ss_pred cEEEEEEecCCCCEEEEE-cCCC----cEEEEECCCceeeeeeecccccceEEEEEecCCCEEEEEcC
Q 003579 226 AVTALAFSSDGQPLLASG-ASSG----VISIWNLEKRRLQSVIREAHDNAIISLHFFANEPVLMSASA 288 (809)
Q Consensus 226 ~V~~l~fs~dg~~~lasg-~~dg----~I~iwdl~~~~~~~~~~~~h~~~V~~l~~~~~~~~l~s~s~ 288 (809)
.+..+.++|||+ +|+.+ +.+| .|++.|+.++..+.... ... -..++|.+|++.|+.+..
T Consensus 128 ~l~~~~~Spdg~-~la~~~d~~G~E~~~l~v~d~~tg~~l~~~i-~~~--~~~~~w~~D~~~~~y~~~ 191 (686)
T PRK10115 128 TLGGMAITPDNT-IMALAEDFLSRRQYGIRFRNLETGNWYPELL-DNV--EPSFVWANDSWTFYYVRK 191 (686)
T ss_pred EEeEEEECCCCC-EEEEEecCCCcEEEEEEEEECCCCCCCCccc-cCc--ceEEEEeeCCCEEEEEEe
Confidence 567788999999 55543 3333 68899998886433222 111 256999999886665544
No 425
>KOG2377 consensus Uncharacterized conserved protein [Function unknown]
Probab=95.00 E-value=0.62 Score=48.24 Aligned_cols=141 Identities=16% Similarity=0.230 Sum_probs=92.3
Q ss_pred EeCCCeEEEEEee--CCeEEEEEeccCCCcEEEEEEecCCCCEEEEEcCCCcEEEEECCCceeeeeeec---ccccceEE
Q 003579 199 GCSDGKIHVHNVR--YDEELVTFTHSMRGAVTALAFSSDGQPLLASGASSGVISIWNLEKRRLQSVIRE---AHDNAIIS 273 (809)
Q Consensus 199 g~~dg~i~iwd~~--~~~~~~~~~~~~~~~V~~l~fs~dg~~~lasg~~dg~I~iwdl~~~~~~~~~~~---~h~~~V~~ 273 (809)
+...|.+.=|-.+ .+.....+....+|+|.++.|++|.+ ++|+--.+..|.+++....+....... ..+..|.+
T Consensus 39 avrSggatgvvvkgpndDVpiSfdm~d~G~I~SIkFSlDnk-ilAVQR~~~~v~f~nf~~d~~~l~~~~~ck~k~~~IlG 117 (657)
T KOG2377|consen 39 AVRSGGATGVVVKGPNDDVPISFDMDDKGEIKSIKFSLDNK-ILAVQRTSKTVDFCNFIPDNSQLEYTQECKTKNANILG 117 (657)
T ss_pred EEecCCeeEEEEeCCCCCCCceeeecCCCceeEEEeccCcc-eEEEEecCceEEEEecCCCchhhHHHHHhccCcceeEE
Confidence 3334555555554 23445566666678999999999999 999999999999999844332222111 23456889
Q ss_pred EEEecCCCEEEEEcCCCcEEEEEeeCCCCCceeEEeccCCCCCCeeEEEecCCCEEEEEE--CCCCEEEEEeee
Q 003579 274 LHFFANEPVLMSASADNSIKMWIFDTTDGDPRLLRFRSGHSAPPLCIRFYANGRHILSAG--QDRAFRLFSVIQ 345 (809)
Q Consensus 274 l~~~~~~~~l~s~s~d~~i~vw~~~~~~~~~~~~~~~~~h~~~v~~i~~~~~~~~l~s~~--~dg~i~~wd~~~ 345 (809)
..|+.+. -++..+. .-+-+|...... +.++....|...|.-..|.++.+.++-++ ..+++.-+-+++
T Consensus 118 F~W~~s~-e~A~i~~-~G~e~y~v~pek---rslRlVks~~~nvnWy~yc~et~v~LL~t~~~~n~lnpf~~~~ 186 (657)
T KOG2377|consen 118 FCWTSST-EIAFITD-QGIEFYQVLPEK---RSLRLVKSHNLNVNWYMYCPETAVILLSTTVLENVLNPFHFRA 186 (657)
T ss_pred EEEecCe-eEEEEec-CCeEEEEEchhh---hhhhhhhhcccCccEEEEccccceEeeeccccccccccEEEee
Confidence 9998764 4444443 347788766554 45666678889999999999887655444 344444444443
No 426
>KOG2280 consensus Vacuolar assembly/sorting protein VPS16 [Intracellular trafficking, secretion, and vesicular transport]
Probab=94.83 E-value=2 Score=47.77 Aligned_cols=195 Identities=14% Similarity=0.182 Sum_probs=106.0
Q ss_pred EEEEEC-CeeEEEEccccccEEEEEEe-CCEEEEEeCCCcEEEEEcCCCccccceeeeEEcCCccccEEEEeCCCCCCEE
Q 003579 77 IAVVKR-AHQVATWSRHSAKVNLLLLF-GEHILSIDIDGNMFIWAFKGIEENLAPVGHVKLDDKFTPTCIMHPDTYLNKV 154 (809)
Q Consensus 77 i~vw~~-~~~~~~~~~h~~~V~~l~~~-g~~l~s~~~dg~i~vWd~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~l 154 (809)
|+||+. |..+.++.-..+++..+.|+ ..-|+....+|+++|+++.........+. .+.....+..|.+.-+| +
T Consensus 66 I~If~~sG~lL~~~~w~~~~lI~mgWs~~eeLI~v~k~g~v~Vy~~~ge~ie~~svg-~e~~~~~I~ec~~f~~G----V 140 (829)
T KOG2280|consen 66 IRIFNISGQLLGRILWKHGELIGMGWSDDEELICVQKDGTVHVYGLLGEFIESNSVG-FESQMSDIVECRFFHNG----V 140 (829)
T ss_pred EEEEeccccchHHHHhcCCCeeeecccCCceEEEEeccceEEEeecchhhhcccccc-cccccCceeEEEEecCc----e
Confidence 888876 44555544334478888884 67899999999999999876544211110 11122223445544455 6
Q ss_pred EEEeCCCeEEEEeCCCCceEEEEcC---CCCCEEEEEEcCCCC---EE-EEEeCCCeEEEEEeeCC-eEEEEEeccCCCc
Q 003579 155 IVGSQEGSLQLWNISTKKKLYEFKG---WGSSISSCVSSPALD---VV-AVGCSDGKIHVHNVRYD-EELVTFTHSMRGA 226 (809)
Q Consensus 155 ~~~~~dg~i~lwd~~~~~~~~~~~~---~~~~I~~l~~sp~~~---~l-a~g~~dg~i~iwd~~~~-~~~~~~~~~~~~~ 226 (809)
++-..+|.+.+-+-..-..+++++. ...+-+|-..-+++. .+ .+.-..| ..+.-...+ .....+... .+.
T Consensus 141 avlt~~g~v~~i~~~~~~~~~~~~diP~~~~~~~~Wt~~~~~~~~~~ll~v~~~v~-~~~~q~~~~~~q~~~~~~~-~~~ 218 (829)
T KOG2280|consen 141 AVLTVSGQVILINGVEEPKLRKMPDIPYNELPKSCWTVFQPHRQSTILLDVDVAVG-LHICQVEESRVQLHALSWP-NSS 218 (829)
T ss_pred EEEecCCcEEEEcCCCcchhhhCCCCCCccCCCcceeEecCCCcceeEEeechhhh-hcccceecccccccccCCC-Cce
Confidence 7666777777766433333444432 111212322222211 11 1111111 111222211 122223222 367
Q ss_pred EEEEEEecCCCCEEEEEcCCCcEEEEECCCceeeeeeecccccceEEEEEecC
Q 003579 227 VTALAFSSDGQPLLASGASSGVISIWNLEKRRLQSVIREAHDNAIISLHFFAN 279 (809)
Q Consensus 227 V~~l~fs~dg~~~lasg~~dg~I~iwdl~~~~~~~~~~~~h~~~V~~l~~~~~ 279 (809)
+..++.||+.+ +|+--...|.|.+-+.+..+....+...-..+...++|..+
T Consensus 219 ~~ki~VS~n~~-~laLyt~~G~i~~vs~D~~~~lce~~~~~~~~p~qm~Wcgn 270 (829)
T KOG2280|consen 219 VVKISVSPNRR-FLALYTETGKIWVVSIDLSQILCEFNCTDHDPPKQMAWCGN 270 (829)
T ss_pred EEEEEEcCCcc-eEEEEecCCcEEEEecchhhhhhccCCCCCCchHhceeecC
Confidence 88999999988 88888889999999888777666655333333335666543
No 427
>PF12234 Rav1p_C: RAVE protein 1 C terminal; InterPro: IPR022033 This domain family is found in eukaryotes, and is typically between 621 and 644 amino acids in length. This family is the C-terminal region of the protein RAVE (regulator of the ATPase of vacuolar and endosomal membranes). Rav1p is involved in regulating the glucose dependent assembly and disassembly of vacuolar ATPase V1 and V0 subunits.
Probab=94.83 E-value=0.7 Score=51.49 Aligned_cols=107 Identities=17% Similarity=0.283 Sum_probs=73.4
Q ss_pred EEEEEcCCCCEEEEEeCcCeEEEEECCCCceeeeeec--CCCeEEEEEee--CCCEEEEEeCCCeEEEEEcC--------
Q 003579 478 VGVACDSTNTLMISAGYHGDIKVWDFKGRDLKSRWEV--GCSLVKIVYHR--VNGLLATVADDLVIRLFDVV-------- 545 (809)
Q Consensus 478 ~~l~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~--~~~i~~~~~s~--~~~~la~~~~d~~I~v~d~~-------- 545 (809)
+-+.-+.-++..++-+....+.|||.+.+.+...... ...|..+.|.. +++.+.+.+-...|.+|--.
T Consensus 33 ~li~gss~~k~a~V~~~~~~LtIWD~~~~~lE~~~~f~~~~~I~dLDWtst~d~qsiLaVGf~~~v~l~~Q~R~dy~~~~ 112 (631)
T PF12234_consen 33 SLISGSSIKKIAVVDSSRSELTIWDTRSGVLEYEESFSEDDPIRDLDWTSTPDGQSILAVGFPHHVLLYTQLRYDYTNKG 112 (631)
T ss_pred ceEeecccCcEEEEECCCCEEEEEEcCCcEEEEeeeecCCCceeeceeeecCCCCEEEEEEcCcEEEEEEccchhhhcCC
Confidence 3344444555555555556799999999887665554 68999998864 78877777788888887431
Q ss_pred -CCeEEEEE--ecCC-CCeeeEEECCCCCEEEEEeCCCeEEEEEc
Q 003579 546 -ALRMVRKF--EGHT-DRITDFCFSEDGKWLLSSGMDGSLRIWDV 586 (809)
Q Consensus 546 -~~~~~~~~--~~h~-~~I~~l~fspdg~~l~s~s~D~~I~vwd~ 586 (809)
+...++++ ..|+ .+|.+..|.+||.+++.++ +.+.|+|-
T Consensus 113 p~w~~i~~i~i~~~T~h~Igds~Wl~~G~LvV~sG--Nqlfv~dk 155 (631)
T PF12234_consen 113 PSWAPIRKIDISSHTPHPIGDSIWLKDGTLVVGSG--NQLFVFDK 155 (631)
T ss_pred cccceeEEEEeecCCCCCccceeEecCCeEEEEeC--CEEEEECC
Confidence 22334443 3455 6899999999997666543 56888874
No 428
>KOG4441 consensus Proteins containing BTB/POZ and Kelch domains, involved in regulatory/signal transduction processes [Signal transduction mechanisms; General function prediction only]
Probab=94.80 E-value=2.4 Score=47.88 Aligned_cols=222 Identities=13% Similarity=0.121 Sum_probs=118.0
Q ss_pred CeEEEEEEcC------CeEEEEEcCccEEEEec-CCCCCCcEEEEEeCCeEEEEECCe--------EEEEECCee----E
Q 003579 26 TENFVTVSVG------KAFHIYNCAKLNLVLVG-PQLPKKIRALASYRDYTFAAYGNH--------IAVVKRAHQ----V 86 (809)
Q Consensus 26 ~~~~i~~~~~------~~i~iwd~~~~~~~~~~-~~~~~~I~~la~~~~~~~~a~g~~--------i~vw~~~~~----~ 86 (809)
+..+++++.. .++..||..+..-.... -..+..-.++++.++.+|++.|.. +..||..+. +
T Consensus 285 ~~l~~vGG~~~~~~~~~~ve~yd~~~~~w~~~a~m~~~r~~~~~~~~~~~lYv~GG~~~~~~~l~~ve~YD~~~~~W~~~ 364 (571)
T KOG4441|consen 285 GKLVAVGGYNRQGQSLRSVECYDPKTNEWSSLAPMPSPRCRVGVAVLNGKLYVVGGYDSGSDRLSSVERYDPRTNQWTPV 364 (571)
T ss_pred CeEEEECCCCCCCcccceeEEecCCcCcEeecCCCCcccccccEEEECCEEEEEccccCCCcccceEEEecCCCCceecc
Confidence 3445555554 56889999997544444 234566678888888899887643 666665332 1
Q ss_pred EEEccccccEEEEEEeCCEEEEEeCCCc-----EEEEEcCCCccccceeeeEEcCCccccEEEEeCCCCCCEEEEEeCC-
Q 003579 87 ATWSRHSAKVNLLLLFGEHILSIDIDGN-----MFIWAFKGIEENLAPVGHVKLDDKFTPTCIMHPDTYLNKVIVGSQE- 160 (809)
Q Consensus 87 ~~~~~h~~~V~~l~~~g~~l~s~~~dg~-----i~vWd~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~l~~~~~d- 160 (809)
..+.............|...|.|+.||. +-.||..+.+-.. +.... .......+..-.+ ...++|+.+
T Consensus 365 a~M~~~R~~~~v~~l~g~iYavGG~dg~~~l~svE~YDp~~~~W~~--va~m~--~~r~~~gv~~~~g--~iYi~GG~~~ 438 (571)
T KOG4441|consen 365 APMNTKRSDFGVAVLDGKLYAVGGFDGEKSLNSVECYDPVTNKWTP--VAPML--TRRSGHGVAVLGG--KLYIIGGGDG 438 (571)
T ss_pred CCccCccccceeEEECCEEEEEeccccccccccEEEecCCCCcccc--cCCCC--cceeeeEEEEECC--EEEEEcCcCC
Confidence 2233333333344456777788888864 6777776654311 11111 1111122233344 345555544
Q ss_pred -----CeEEEEeCCCCceE--EEEcCCCCCEEEEEEcCCCCEEEEEeCCC-----eEEEEEeeCCeEEEEEeccCCCcEE
Q 003579 161 -----GSLQLWNISTKKKL--YEFKGWGSSISSCVSSPALDVVAVGCSDG-----KIHVHNVRYDEELVTFTHSMRGAVT 228 (809)
Q Consensus 161 -----g~i~lwd~~~~~~~--~~~~~~~~~I~~l~~sp~~~~la~g~~dg-----~i~iwd~~~~~~~~~~~~~~~~~V~ 228 (809)
.++..||..+++=. ..+..-..... .-.-++.+.++|+.|+ +|..||..+.+-...-... .+..
T Consensus 439 ~~~~l~sve~YDP~t~~W~~~~~M~~~R~~~g--~a~~~~~iYvvGG~~~~~~~~~VE~ydp~~~~W~~v~~m~--~~rs 514 (571)
T KOG4441|consen 439 SSNCLNSVECYDPETNTWTLIAPMNTRRSGFG--VAVLNGKIYVVGGFDGTSALSSVERYDPETNQWTMVAPMT--SPRS 514 (571)
T ss_pred CccccceEEEEcCCCCceeecCCcccccccce--EEEECCEEEEECCccCCCccceEEEEcCCCCceeEcccCc--cccc
Confidence 35677887665422 22221111122 2223466778888776 3777888777654442211 1122
Q ss_pred EEEEec-CCCCEEEEEcCCC-----cEEEEECCCce
Q 003579 229 ALAFSS-DGQPLLASGASSG-----VISIWNLEKRR 258 (809)
Q Consensus 229 ~l~fs~-dg~~~lasg~~dg-----~I~iwdl~~~~ 258 (809)
...... ++. +.++|+.|| +|..||..+.+
T Consensus 515 ~~g~~~~~~~-ly~vGG~~~~~~l~~ve~ydp~~d~ 549 (571)
T KOG4441|consen 515 AVGVVVLGGK-LYAVGGFDGNNNLNTVECYDPETDT 549 (571)
T ss_pred cccEEEECCE-EEEEecccCccccceeEEcCCCCCc
Confidence 222222 344 778888665 56677766553
No 429
>PF03022 MRJP: Major royal jelly protein; InterPro: IPR003534 The major royal jelly proteins (MRJPs) comprise 12.5% of the mass, and 82-90% of the protein content [], of honeybee (Apis mellifera) royal jelly. Royal jelly is a substance secreted by the cephalic glands of nurse bees [] and it is used to trigger development of a queen bee from a bee larva. The biological function of the MRJPs is unknown, but they are believed to play a major role in nutrition due to their high essential amino acid content []. Two royal jelly proteins, MRJP3 and MRJP5, contain a tandem repeat that results from a high genetic variablility. This polymorphism may be useful for genotyping individual bees [].; PDB: 3Q6P_B 3Q6K_A 3Q6T_A 2QE8_B.
Probab=94.80 E-value=3.5 Score=41.94 Aligned_cols=160 Identities=17% Similarity=0.269 Sum_probs=96.5
Q ss_pred cEEEEEEcCCCCEEEEE-eC-----------cCeEEEEECCCCceeeeeecC-------CCeEEEEEeeCC-----CEEE
Q 003579 476 EVVGVACDSTNTLMISA-GY-----------HGDIKVWDFKGRDLKSRWEVG-------CSLVKIVYHRVN-----GLLA 531 (809)
Q Consensus 476 ~v~~l~~~~~~~~l~s~-~~-----------dg~i~iwd~~~~~~~~~~~~~-------~~i~~~~~s~~~-----~~la 531 (809)
.|.++.+++++++-+.= |. .-+|.+||++++++++++... +.+..+++.... .++.
T Consensus 2 sV~~v~iD~~~rLWVlD~G~~~~~~~~~~~~~pKLv~~Dl~t~~li~~~~~p~~~~~~~s~lndl~VD~~~~~~~~~~aY 81 (287)
T PF03022_consen 2 SVQRVQIDECGRLWVLDSGRPNGLQPPKQVCPPKLVAFDLKTNQLIRRYPFPPDIAPPDSFLNDLVVDVRDGNCDDGFAY 81 (287)
T ss_dssp -EEEEEE-TTSEEEEEE-CCHSSSSTTGHTS--EEEEEETTTTCEEEEEE--CCCS-TCGGEEEEEEECTTTTS-SEEEE
T ss_pred cccEEEEcCCCCEEEEeCCCcCCCCCCCCCCCcEEEEEECCCCcEEEEEECChHHcccccccceEEEEccCCCCcceEEE
Confidence 36677777777655531 11 126889999999999888654 456677777632 2333
Q ss_pred EEe-CCCeEEEEEcCCCeEEEEEecCC-------------------CCeeeEEECC---CCCEEEEEeCCCeEEEEEcCC
Q 003579 532 TVA-DDLVIRLFDVVALRMVRKFEGHT-------------------DRITDFCFSE---DGKWLLSSGMDGSLRIWDVIL 588 (809)
Q Consensus 532 ~~~-~d~~I~v~d~~~~~~~~~~~~h~-------------------~~I~~l~fsp---dg~~l~s~s~D~~I~vwd~~~ 588 (809)
.+. ..+.|.|+|+.+++..+.+..+. +.+..++.+| ||++|.-....+ -++|.+++
T Consensus 82 ItD~~~~glIV~dl~~~~s~Rv~~~~~~~~p~~~~~~i~g~~~~~~dg~~gial~~~~~d~r~LYf~~lss-~~ly~v~T 160 (287)
T PF03022_consen 82 ITDSGGPGLIVYDLATGKSWRVLHNSFSPDPDAGPFTIGGESFQWPDGIFGIALSPISPDGRWLYFHPLSS-RKLYRVPT 160 (287)
T ss_dssp EEETTTCEEEEEETTTTEEEEEETCGCTTS-SSEEEEETTEEEEETTSEEEEEE-TTSTTS-EEEEEETT--SEEEEEEH
T ss_pred EeCCCcCcEEEEEccCCcEEEEecCCcceeccccceeccCceEecCCCccccccCCCCCCccEEEEEeCCC-CcEEEEEH
Confidence 332 34689999999998777655322 2256667765 777888776554 35565543
Q ss_pred cc--------------EEEEeee-CcceEEEEEcCCCCeEEEEEeCCCeEEEeecCcccCCCCC
Q 003579 589 AR--------------QIDAIHV-DVSITALSLSPNMDVLATAHVDQNGVYLWVNRCMFSGDSN 637 (809)
Q Consensus 589 ~~--------------~i~~~~~-~~~v~~l~~spdg~~lat~~~d~~~i~lW~~~~~~~~~~~ 637 (809)
.- .+..+.. ......++++++|....+--... +|..|+.+..|.+...
T Consensus 161 ~~L~~~~~~~~~~~~~~v~~lG~k~~~s~g~~~D~~G~ly~~~~~~~-aI~~w~~~~~~~~~~~ 223 (287)
T PF03022_consen 161 SVLRDPSLSDAQALASQVQDLGDKGSQSDGMAIDPNGNLYFTDVEQN-AIGCWDPDGPYTPENF 223 (287)
T ss_dssp HHHCSTT--HHH-HHHT-EEEEE---SECEEEEETTTEEEEEECCCT-EEEEEETTTSB-GCCE
T ss_pred HHhhCccccccccccccceeccccCCCCceEEECCCCcEEEecCCCC-eEEEEeCCCCcCccch
Confidence 21 1122211 13467889999887666665555 7999999987776543
No 430
>PF10433 MMS1_N: Mono-functional DNA-alkylating methyl methanesulfonate N-term; PDB: 2B5M_A 4A0K_C 4A0B_C 3I7L_A 2B5N_C 3I8E_A 4A09_A 4A0A_A 3EI4_C 2B5L_A ....
Probab=94.62 E-value=9.6 Score=42.68 Aligned_cols=393 Identities=10% Similarity=0.099 Sum_probs=171.0
Q ss_pred ccEEEEeCCCCCCEEEEEeCCCeEEEEeCCC--------CceEEEEcCCCCCEEEEEEcC-----CCCEEEEEe--CCC-
Q 003579 140 TPTCIMHPDTYLNKVIVGSQEGSLQLWNIST--------KKKLYEFKGWGSSISSCVSSP-----ALDVVAVGC--SDG- 203 (809)
Q Consensus 140 ~~~~~~~p~~~~~~l~~~~~dg~i~lwd~~~--------~~~~~~~~~~~~~I~~l~~sp-----~~~~la~g~--~dg- 203 (809)
...++.+|.+ +.++++..+|.+.++.++. ...+...-.....|..++|-. +...+|+-. ..+
T Consensus 46 G~~l~vDP~~--R~i~v~a~e~~~~v~~l~~~~~~~~~~~~~~~~pi~s~~~i~~~~FL~~~~~~~~p~la~L~~~~~~~ 123 (504)
T PF10433_consen 46 GQYLAVDPSG--RCIAVSAYEGNFLVYPLNRSLDSDIAFSPHINSPIKSEGNILDMCFLHPSVGYDNPTLAILYVDSQRR 123 (504)
T ss_dssp --EEEE-TTS--SEEEEEEBTTEEEEEE-SS----T-TT---EEEE--S-SEEEEEEEES---S-SS-EEEEEEEETT-E
T ss_pred CcEEEECCcC--CEEEEEecCCeEEEEEecccccccccccccccccccCCceEEEEEEEecccCCCCceEEEEEEEeccc
Confidence 3467899999 8899999999999998876 011111111256788888875 233444432 222
Q ss_pred -eEEEEEeeCCeEEEE----------EeccCCCcEEEEEEecCCCCEEEEEcCCCcEEEEE-CCCc---eeeeeeec---
Q 003579 204 -KIHVHNVRYDEELVT----------FTHSMRGAVTALAFSSDGQPLLASGASSGVISIWN-LEKR---RLQSVIRE--- 265 (809)
Q Consensus 204 -~i~iwd~~~~~~~~~----------~~~~~~~~V~~l~fs~dg~~~lasg~~dg~I~iwd-l~~~---~~~~~~~~--- 265 (809)
.+..++......+.. +......+..-+....... .+++++. + +.+|. .... .....+..
T Consensus 124 ~~~~~y~w~~~~~l~~~~~~~~~~~~l~~~~~~p~~LIPlp~~~g-gllV~~~-~-~i~y~~~~~~~~~~~~~~~~~~~~ 200 (504)
T PF10433_consen 124 THLVTYEWSLDDGLNHVISKSTLPIRLPNEDELPSFLIPLPNPPG-GLLVGGE-N-IIIYKNHLIGSGDYSFLSIPSPPS 200 (504)
T ss_dssp EEEEEEE--------EETTTTEEEE--EEEE-TTEEEEEE-TTT--SEEEEES-S-EEEEEE------TTEEEEE--H-H
T ss_pred ceeEEEeeecccccceeeeeccccccccccCCCccEEEEcCCCCc-EEEEECC-E-EEEEecccccccccccccccCCcc
Confidence 244444222221111 1111112222222222122 3344432 2 33443 2111 11111110
Q ss_pred ccccceEEEE-------EecCCCEEEEEcCCCcEEEEEeeCCCCCceeEEeccCC-CCCCeeEEEecCC-CEEEEEECCC
Q 003579 266 AHDNAIISLH-------FFANEPVLMSASADNSIKMWIFDTTDGDPRLLRFRSGH-SAPPLCIRFYANG-RHILSAGQDR 336 (809)
Q Consensus 266 ~h~~~V~~l~-------~~~~~~~l~s~s~d~~i~vw~~~~~~~~~~~~~~~~~h-~~~v~~i~~~~~~-~~l~s~~~dg 336 (809)
....-+.+.. ...++..++.+..+|.+....++.... .+....-+. .....++.+..+| .+++.|+.-|
T Consensus 201 ~~~~~~~~~~~p~~~~~~~~~~~~~lL~~e~G~l~~l~l~~~~~--~i~i~~~g~~~~~~s~l~~l~~g~d~lf~gs~~g 278 (504)
T PF10433_consen 201 SSSSLWTSWARPERNISYDKDGDRILLQDEDGDLYLLTLDNDGG--SISITYLGTLCSIASSLTYLKNGGDYLFVGSEFG 278 (504)
T ss_dssp HHTS-EEEEEE------SSTTSSEEEEEETTSEEEEEEEEEEEE--EEEEEEEEE--S-ESEEEEESTT--EEEEEESSS
T ss_pred CCCceEEEEEeccccceecCCCCEEEEEeCCCeEEEEEEEECCC--eEEEEEcCCcCChhheEEEEcCCCEEEEEEEecC
Confidence 1122233332 234566888888999998887766532 212222233 4556677777655 4677777655
Q ss_pred CEEEEEeeecccceecchhhHHHHHhhccchhhhhccCceeEEeeccccccccc------eeEEeec--CCceEEEEEee
Q 003579 337 AFRLFSVIQDQQSRELSQRHVAKRARKLKMKEEELKLKPVIAFDCAEIRERDWC------NVVTCHM--DTAQAYVWRLQ 408 (809)
Q Consensus 337 ~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~------~~~~~~~--~~~~~~~w~~~ 408 (809)
.=.++.+.... +.....-....|+..+.........-. .+++|.. .++.+++....
T Consensus 279 ds~l~~~~~~~----------------l~~~~~~~N~~Pi~D~~v~~~~~~~~~~~~~~~~lv~~sG~g~~gsL~~lr~G 342 (504)
T PF10433_consen 279 DSQLLQISLSN----------------LEVLDSLPNWGPIVDFCVVDSSNSGQPSNPSSDQLVACSGAGKRGSLRILRNG 342 (504)
T ss_dssp -EEEEEEESES----------------EEEEEEE----SEEEEEEE-TSSSSS-------EEEEEESSGGG-EEEEEEES
T ss_pred CcEEEEEeCCC----------------cEEEEeccCcCCccceEEeccccCCCCcccccceEEEEECcCCCCcEEEEecc
Confidence 44444433111 111112224568888877654433333 6666654 45566655432
Q ss_pred eeeecceeeecCCCCCCCeEEEEEcC----CCCEEEEEeCCCcEEEEECC---CCceeeeeeCcccccccCccccEEEEE
Q 003579 409 NFVLGEHILRPCPENPTAVKACTISA----CGNFAVLGTAGGWIERFNLQ---SGISRGSYLDMSERSNYAHNGEVVGVA 481 (809)
Q Consensus 409 ~~~~~~~~~~~~~~~~~~v~~v~~s~----~g~~l~~g~~~g~i~i~~~~---~~~~~~~~~~~~~~~~~~h~~~v~~l~ 481 (809)
-...+....... . ..++.+-.-+ ++.+++++..+. -.++.+. .......... . ........+.+-.
T Consensus 343 i~~~~~~~~~~~--l-~~v~~iW~l~~~~~~~~~lv~S~~~~-T~vl~~~~~d~~e~~~e~~~-~--~f~~~~~Tl~~~~ 415 (504)
T PF10433_consen 343 IGIEGLELASSE--L-PGVTGIWTLKLSSSDHSYLVLSFPNE-TRVLQISEGDDGEEVEEVEE-D--GFDTDEPTLAAGN 415 (504)
T ss_dssp BEEE--EEEEEE--E-STEEEEEEE-SSSSSBSEEEEEESSE-EEEEEES----SSEEEEE------TS-SSS-EEEEEE
T ss_pred CCceeeeeeccC--C-CCceEEEEeeecCCCceEEEEEcCCc-eEEEEEecccCCcchhhhhh-c--cCCCCCCCeEEEE
Confidence 211100110000 0 1133332222 246777776654 3444443 2222211110 0 0011112222222
Q ss_pred EcCCCCEEEEEeCcCeEEEEECCCCceeeeeecC--CCeEEEEEeeCCCEEEEEeCCCeEEEEEcCCCeEEEEEe-c---
Q 003579 482 CDSTNTLMISAGYHGDIKVWDFKGRDLKSRWEVG--CSLVKIVYHRVNGLLATVADDLVIRLFDVVALRMVRKFE-G--- 555 (809)
Q Consensus 482 ~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~--~~i~~~~~s~~~~~la~~~~d~~I~v~d~~~~~~~~~~~-~--- 555 (809)
+. +..++=... ..|++.+...++....+... ..|.+.+. ++.+++++..++.+..+.+.......... .
T Consensus 416 ~~--~~~ivQVt~-~~i~l~~~~~~~~~~~w~~~~~~~I~~a~~--~~~~v~v~~~~~~~~~~~~~~~~~~~~~~~~~~~ 490 (504)
T PF10433_consen 416 VG--DGRIVQVTP-KGIRLIDLEDGKLTQEWKPPAGSIIVAASI--NDPQVLVALSGGELVYFELDDNKISVSDNDETIL 490 (504)
T ss_dssp ET--TTEEEEEES-SEEEEEESSSTSEEEEEE-TTS---SEEEE--SSSEEEEEE-TTEEEEEEEETTEEEEEEE----E
T ss_pred cC--CCeEEEEec-CeEEEEECCCCeEEEEEeCCCCCeEEEEEE--CCCEEEEEEeCCcEEEEEEECCceeeeeeccccc
Confidence 22 444554444 34888888888777776554 44444444 46788888889999999988776643332 1
Q ss_pred -CCCCeeeEEECC
Q 003579 556 -HTDRITDFCFSE 567 (809)
Q Consensus 556 -h~~~I~~l~fsp 567 (809)
....|.++..+|
T Consensus 491 ~~~~eis~l~i~p 503 (504)
T PF10433_consen 491 ELDNEISCLSIEP 503 (504)
T ss_dssp E-SS-EEEEE---
T ss_pred cCCCceEEEEeCC
Confidence 457788887766
No 431
>PHA03098 kelch-like protein; Provisional
Probab=94.53 E-value=1.8 Score=48.94 Aligned_cols=133 Identities=10% Similarity=0.073 Sum_probs=61.2
Q ss_pred CEEEEEeCC-----CeEEEEeCCCCceEE--EEcCCCCCEEEEEEcCCCCEEEEEeCC------CeEEEEEeeCCeEEEE
Q 003579 152 NKVIVGSQE-----GSLQLWNISTKKKLY--EFKGWGSSISSCVSSPALDVVAVGCSD------GKIHVHNVRYDEELVT 218 (809)
Q Consensus 152 ~~l~~~~~d-----g~i~lwd~~~~~~~~--~~~~~~~~I~~l~~sp~~~~la~g~~d------g~i~iwd~~~~~~~~~ 218 (809)
...+.|+.+ ..+..||..+.+=.. .+....... +++ .-++.+.+.|+.+ ..+..||..+++-...
T Consensus 344 ~lyv~GG~~~~~~~~~v~~yd~~~~~W~~~~~lp~~r~~~-~~~-~~~~~iYv~GG~~~~~~~~~~v~~yd~~t~~W~~~ 421 (534)
T PHA03098 344 RIYVIGGIYNSISLNTVESWKPGESKWREEPPLIFPRYNP-CVV-NVNNLIYVIGGISKNDELLKTVECFSLNTNKWSKG 421 (534)
T ss_pred EEEEEeCCCCCEecceEEEEcCCCCceeeCCCcCcCCccc-eEE-EECCEEEEECCcCCCCcccceEEEEeCCCCeeeec
Confidence 445566654 347778876653221 111111111 111 2355666676632 4588899877653322
Q ss_pred EeccCCCcEEEEEEecCCCCEEEEEcCC--------CcEEEEECCCceeeeeeecccccceEEEEEecCCCEEEEEcCC
Q 003579 219 FTHSMRGAVTALAFSSDGQPLLASGASS--------GVISIWNLEKRRLQSVIREAHDNAIISLHFFANEPVLMSASAD 289 (809)
Q Consensus 219 ~~~~~~~~V~~l~fs~dg~~~lasg~~d--------g~I~iwdl~~~~~~~~~~~~h~~~V~~l~~~~~~~~l~s~s~d 289 (809)
-.......-.++ ...++. +.+.|+.+ ..+.+||..+++-...-.......-.+++. -++.+++.||.+
T Consensus 422 ~~~p~~r~~~~~-~~~~~~-iyv~GG~~~~~~~~~~~~v~~yd~~~~~W~~~~~~~~~r~~~~~~~-~~~~iyv~GG~~ 497 (534)
T PHA03098 422 SPLPISHYGGCA-IYHDGK-IYVIGGISYIDNIKVYNIVESYNPVTNKWTELSSLNFPRINASLCI-FNNKIYVVGGDK 497 (534)
T ss_pred CCCCccccCceE-EEECCE-EEEECCccCCCCCcccceEEEecCCCCceeeCCCCCcccccceEEE-ECCEEEEEcCCc
Confidence 111101111122 223555 67777643 238889988774332211011111112222 266677777654
No 432
>KOG3630 consensus Nuclear pore complex, Nup214/CAN component [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=94.41 E-value=0.39 Score=55.34 Aligned_cols=188 Identities=14% Similarity=0.083 Sum_probs=110.7
Q ss_pred EEEEEcCCCCEEEEEeCCCcEEEEECCCCceeeeeeCccc--------ccc-cCccccEEEEEEcCCCCEEEE--EeCcC
Q 003579 428 KACTISACGNFAVLGTAGGWIERFNLQSGISRGSYLDMSE--------RSN-YAHNGEVVGVACDSTNTLMIS--AGYHG 496 (809)
Q Consensus 428 ~~v~~s~~g~~l~~g~~~g~i~i~~~~~~~~~~~~~~~~~--------~~~-~~h~~~v~~l~~~~~~~~l~s--~~~dg 496 (809)
..++.++.-..++++...+.+.++-..+-.....-.+... ... ....-.+..+.+.+|+...++ .+.+-
T Consensus 45 n~la~sn~ysl~Fa~~nsk~L~vfgtknlLi~~it~D~~n~~Vd~~~~~t~~v~k~~pi~~~v~~~D~t~s~v~~tsng~ 124 (1405)
T KOG3630|consen 45 NNLAISNSYSLFFAASNSKSLAVFGTKNLLIDHITSDSTNSLVDADENLTFKVEKEIPIVIFVCFHDATDSVVVSTSNGE 124 (1405)
T ss_pred hhhhcccccceEEEecCCcceeeeccccceeecccccccccccccccccceeeeccccceEEEeccCCceEEEEEecCCc
Confidence 3455666555666666666666654433211111100000 001 122345666777777654443 33445
Q ss_pred eEEEEECCCCceee--------ee----ecCCCeEEEEEeeCC-CEEEEEeCCCeEEEEEcCCCeE-EEEEecCCCCeee
Q 003579 497 DIKVWDFKGRDLKS--------RW----EVGCSLVKIVYHRVN-GLLATVADDLVIRLFDVVALRM-VRKFEGHTDRITD 562 (809)
Q Consensus 497 ~i~iwd~~~~~~~~--------~~----~~~~~i~~~~~s~~~-~~la~~~~d~~I~v~d~~~~~~-~~~~~~h~~~I~~ 562 (809)
.|..||+++-..-. .. ....-..++.|.|.- ...|+...|+.|+|..+..... +..+. -....++
T Consensus 125 ~v~~fD~~~fs~s~~~~~~pl~~s~ts~ek~vf~~~~~wnP~vp~n~av~l~dlsl~V~~~~~~~~~v~s~p-~t~~~Ta 203 (1405)
T KOG3630|consen 125 AVYSFDLEEFSESRYETTVPLKNSATSFEKPVFQLKNVWNPLVPLNSAVDLSDLSLRVKSTKQLAQNVTSFP-VTNSQTA 203 (1405)
T ss_pred eEEEEehHhhhhhhhhhccccccccchhccccccccccccCCccchhhhhccccchhhhhhhhhhhhhcccC-cccceee
Confidence 78999987542221 11 111344566777743 3456677899999887654332 22222 4567899
Q ss_pred EEECCCCCEEEEEeCCCeEEEEEcCCccEEEEeee-----CcceEEEEEcCCCCeEEEEE
Q 003579 563 FCFSEDGKWLLSSGMDGSLRIWDVILARQIDAIHV-----DVSITALSLSPNMDVLATAH 617 (809)
Q Consensus 563 l~fspdg~~l~s~s~D~~I~vwd~~~~~~i~~~~~-----~~~v~~l~~spdg~~lat~~ 617 (809)
++|+|.|+.++.|-..|++.-|. ++++....+.. ...|.+|+|-....||+.=+
T Consensus 204 v~WSprGKQl~iG~nnGt~vQy~-P~leik~~ip~Pp~~e~yrvl~v~Wl~t~eflvvy~ 262 (1405)
T KOG3630|consen 204 VLWSPRGKQLFIGRNNGTEVQYE-PSLEIKSEIPEPPVEENYRVLSVTWLSTQEFLVVYG 262 (1405)
T ss_pred EEeccccceeeEecCCCeEEEee-cccceeecccCCCcCCCcceeEEEEecceeEEEEec
Confidence 99999999999999999998887 44554444432 23499999998888887654
No 433
>TIGR03118 PEPCTERM_chp_1 conserved hypothetical protein TIGR03118. This model describes and uncharacterized conserved hypothetical protein. Members are found with the C-terminal putative exosortase interaction domain, PEP-CTERM, in Nitrosospira multiformis, Rhodoferax ferrireducens, Solibacter usitatus Ellin6076, and Acidobacteria bacterium Ellin345. It is found without the PEP-CTERM domain in several other species, including Burkholderia ambifaria, Gloeobacter violaceus PCC 7421, and three copies in the Acanthamoeba polyphaga mimivirus.
Probab=94.38 E-value=6.1 Score=39.40 Aligned_cols=236 Identities=12% Similarity=0.130 Sum_probs=127.4
Q ss_pred ceEEEEEecCCCEEEEEcCCCcEEEEEeeCCC--CCc-eeEEeccC-----CCCCCeeEEEecCCC------------EE
Q 003579 270 AIISLHFFANEPVLMSASADNSIKMWIFDTTD--GDP-RLLRFRSG-----HSAPPLCIRFYANGR------------HI 329 (809)
Q Consensus 270 ~V~~l~~~~~~~~l~s~s~d~~i~vw~~~~~~--~~~-~~~~~~~~-----h~~~v~~i~~~~~~~------------~l 329 (809)
.-+.|+++|.+.+-++....+...+|+.+... +.+ .+...... ....++.+.|+.... .+
T Consensus 24 N~WGia~~p~~~~WVadngT~~~TlYdg~~~~~~g~~~~L~vtiP~~~~~~~~~~PTGiVfN~~~~F~vt~~g~~~~a~F 103 (336)
T TIGR03118 24 NAWGLSYRPGGPFWVANTGTGTATLYVGNPDTQPLVQDPLVVVIPAPPPLAAEGTPTGQVFNGSDTFVVSGEGITGPSRF 103 (336)
T ss_pred ccceeEecCCCCEEEecCCcceEEeecCCcccccCCccceEEEecCCCCCCCCCCccEEEEeCCCceEEcCCCcccceeE
Confidence 35789999999988888888999999876221 111 22333221 234678888875332 35
Q ss_pred EEEECCCCEEEEEeeecccceecchhhHHHHHhhccchhhhhccCceeEEeeccccccccceeEEeecCCceEEEEEeee
Q 003579 330 LSAGQDRAFRLFSVIQDQQSRELSQRHVAKRARKLKMKEEELKLKPVIAFDCAEIRERDWCNVVTCHMDTAQAYVWRLQN 409 (809)
Q Consensus 330 ~s~~~dg~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~ 409 (809)
+.+++||+|.-|...-+..... ..+ .+.|-.
T Consensus 104 if~tEdGTisaW~p~v~~t~~~----------------------~~~--------------------------~~~d~s- 134 (336)
T TIGR03118 104 LFVTEDGTLSGWAPALGTTRMT----------------------RAE--------------------------IVVDAS- 134 (336)
T ss_pred EEEeCCceEEeecCcCCccccc----------------------ccE--------------------------EEEccC-
Confidence 6778888888887422211000 000 000000
Q ss_pred eeecceeeecCCCCCCCeEEEEEc--CCCCEEEEE-eCCCcEEEEECCCCcee--eeeeCccccc--------ccCcccc
Q 003579 410 FVLGEHILRPCPENPTAVKACTIS--ACGNFAVLG-TAGGWIERFNLQSGISR--GSYLDMSERS--------NYAHNGE 476 (809)
Q Consensus 410 ~~~~~~~~~~~~~~~~~v~~v~~s--~~g~~l~~g-~~~g~i~i~~~~~~~~~--~~~~~~~~~~--------~~~h~~~ 476 (809)
.....-+.+++. ..+++|..+ -.+|+|.+||-.-.... ..+.+..... ..+..--
T Consensus 135 ------------~~gavYkGLAi~~~~~~~~LYaadF~~g~IDVFd~~f~~~~~~g~F~DP~iPagyAPFnIqnig~~ly 202 (336)
T TIGR03118 135 ------------QQGNVYKGLAVGPTGGGDYLYAANFRQGRIDVFKGSFRPPPLPGSFIDPALPAGYAPFNVQNLGGTLY 202 (336)
T ss_pred ------------CCcceeeeeEEeecCCCceEEEeccCCCceEEecCccccccCCCCccCCCCCCCCCCcceEEECCeEE
Confidence 000222334443 335555544 45688988875443221 1111110000 0000111
Q ss_pred EEEEEEcCCCCEEEEEeCcCeEEEEECCCCceeeeeecC---CCeEEEEEee------CCCEEEEEeCCCeEEEEEcCCC
Q 003579 477 VVGVACDSTNTLMISAGYHGDIKVWDFKGRDLKSRWEVG---CSLVKIVYHR------VNGLLATVADDLVIRLFDVVAL 547 (809)
Q Consensus 477 v~~l~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~---~~i~~~~~s~------~~~~la~~~~d~~I~v~d~~~~ 547 (809)
|+-..-+++...=+.+..-|.|-+||.. +.+++++... ...+.|+..| .+.+|+--..||+|..||..++
T Consensus 203 VtYA~qd~~~~d~v~G~G~G~VdvFd~~-G~l~~r~as~g~LNaPWG~a~APa~FG~~sg~lLVGNFGDG~InaFD~~sG 281 (336)
T TIGR03118 203 VTYAQQDADRNDEVAGAGLGYVNVFTLN-GQLLRRVASSGRLNAPWGLAIAPESFGSLSGALLVGNFGDGTINAYDPQSG 281 (336)
T ss_pred EEEEecCCcccccccCCCcceEEEEcCC-CcEEEEeccCCcccCCceeeeChhhhCCCCCCeEEeecCCceeEEecCCCC
Confidence 2222223333222333444789999965 6677777554 4566777765 3667777778999999999999
Q ss_pred eEEEEEecCCC------CeeeEEECC
Q 003579 548 RMVRKFEGHTD------RITDFCFSE 567 (809)
Q Consensus 548 ~~~~~~~~h~~------~I~~l~fsp 567 (809)
+.+..+....+ .+..|+|-.
T Consensus 282 ~~~g~L~~~~G~pi~i~GLWgL~fGn 307 (336)
T TIGR03118 282 AQLGQLLDPDNHPVKVDGLWSLTFGN 307 (336)
T ss_pred ceeeeecCCCCCeEEecCeEEeeeCC
Confidence 98888775433 245566644
No 434
>KOG1900 consensus Nuclear pore complex, Nup155 component (D Nup154, sc Nup157/Nup170) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=94.35 E-value=12 Score=44.90 Aligned_cols=179 Identities=15% Similarity=0.206 Sum_probs=102.8
Q ss_pred EEEeCCCCceEEEEcCCCCCEEEEEEcCCCCEEEEEeCCCeEEEEEeeCCeEEEEEeccCCCcEEEEEE--------ecC
Q 003579 164 QLWNISTKKKLYEFKGWGSSISSCVSSPALDVVAVGCSDGKIHVHNVRYDEELVTFTHSMRGAVTALAF--------SSD 235 (809)
Q Consensus 164 ~lwd~~~~~~~~~~~~~~~~I~~l~~sp~~~~la~g~~dg~i~iwd~~~~~~~~~~~~~~~~~V~~l~f--------s~d 235 (809)
.+|++. .+.+..+. |...-+.+-+-|.-.+.-. +-|..+.+|+..++.....+..- ...|..+.. .|.
T Consensus 63 ~v~~IP-~el~eq~~-~~~~~~~mGiFpeI~RaWi-TiDn~L~lWny~~~~e~~~~d~~-shtIl~V~LvkPkpgvFv~~ 138 (1311)
T KOG1900|consen 63 QVVNIP-DELLEQFS-NIECKTDMGIFPEIGRAWI-TIDNNLFLWNYESDNELAEYDGL-SHTILKVGLVKPKPGVFVPE 138 (1311)
T ss_pred ccccCC-HHHHHHhc-CcceeeeeccchhhcceEE-EeCCeEEEEEcCCCCccccccch-hhhheeeeeecCCCCcchhh
Confidence 345552 23333333 3344445555555443332 45789999999998777776654 444555543 333
Q ss_pred CCCEEEEEcCCCcEEEEECCCc----ee---eeeeec-ccccceEEEEEecCCCEEEEEcCCCcEEEEEeeCCCC-----
Q 003579 236 GQPLLASGASSGVISIWNLEKR----RL---QSVIRE-AHDNAIISLHFFANEPVLMSASADNSIKMWIFDTTDG----- 302 (809)
Q Consensus 236 g~~~lasg~~dg~I~iwdl~~~----~~---~~~~~~-~h~~~V~~l~~~~~~~~l~s~s~d~~i~vw~~~~~~~----- 302 (809)
=+++|+.++ --.|.++-+.-. .. ...+.. .....|.++....+|+.+++| .||.|.-.-+...++
T Consensus 139 IqhlLvvaT-~~ei~ilgV~~~~~~~~~~~f~~~~~i~~dg~~V~~I~~t~nGRIF~~G-~dg~lyEl~Yq~~~gWf~~r 216 (1311)
T KOG1900|consen 139 IQHLLVVAT-PVEIVILGVSFDEFTGELSIFNTSFKISVDGVSVNCITYTENGRIFFAG-RDGNLYELVYQAEDGWFGSR 216 (1311)
T ss_pred hheeEEecc-cceEEEEEEEeccccCcccccccceeeecCCceEEEEEeccCCcEEEee-cCCCEEEEEEeccCchhhcc
Confidence 345666655 345666543221 11 111111 224568899988888766665 556443333332211
Q ss_pred --------------CceeEEeccCCCCCCeeEEEecCCCEEEEEECCCCEEEEEeeeccc
Q 003579 303 --------------DPRLLRFRSGHSAPPLCIRFYANGRHILSAGQDRAFRLFSVIQDQQ 348 (809)
Q Consensus 303 --------------~~~~~~~~~~h~~~v~~i~~~~~~~~l~s~~~dg~i~~wd~~~~~~ 348 (809)
.+.++.....+..+|..+.....-..+.+-+..+++..|++.....
T Consensus 217 c~Kiclt~s~ls~lvPs~~~~~~~~~dpI~qi~ID~SR~IlY~lsek~~v~~Y~i~~~G~ 276 (1311)
T KOG1900|consen 217 CRKICLTKSVLSSLVPSLLSVPGSSKDPIRQITIDNSRNILYVLSEKGTVSAYDIGGNGL 276 (1311)
T ss_pred cccccCchhHHHHhhhhhhcCCCCCCCcceeeEeccccceeeeeccCceEEEEEccCCCc
Confidence 0122222236778999999998888899999999999999987543
No 435
>PF02333 Phytase: Phytase; InterPro: IPR003431 Phytase (3.1.3.8 from EC) (phytate 3-phosphatase) is a secreted enzyme which hydrolyses phytate to release inorganic phosphate. This family appears to represent a novel enzyme that shows phytase activity () and has been shown to consist of a single structural unit with a six-bladed propeller folding architecture ().; GO: 0016158 3-phytase activity; PDB: 3AMS_A 3AMR_A 1QLG_A 2POO_A 1H6L_A 1CVM_A 1POO_A.
Probab=94.12 E-value=8.8 Score=40.23 Aligned_cols=199 Identities=14% Similarity=0.169 Sum_probs=110.3
Q ss_pred EEEEeCCCCC-CEEEEEeCCCeEEEEeCCCCceEEEEcCCCCCEEEEEEc----CCCCE--EEEEeC-C---CeEEEEEe
Q 003579 142 TCIMHPDTYL-NKVIVGSQEGSLQLWNISTKKKLYEFKGWGSSISSCVSS----PALDV--VAVGCS-D---GKIHVHNV 210 (809)
Q Consensus 142 ~~~~~p~~~~-~~l~~~~~dg~i~lwd~~~~~~~~~~~~~~~~I~~l~~s----p~~~~--la~g~~-d---g~i~iwd~ 210 (809)
.+..+|...- ..|+....++-+.+||+ .|+.++.+.. +....+..- -.++. ||+++. + .+|++|.+
T Consensus 58 AIWvnp~dp~kSlIigTdK~~GL~VYdL-~Gk~lq~~~~--Gr~NNVDvrygf~l~g~~vDlavas~R~~g~n~l~~f~i 134 (381)
T PF02333_consen 58 AIWVNPADPAKSLIIGTDKKGGLYVYDL-DGKELQSLPV--GRPNNVDVRYGFPLNGKTVDLAVASDRSDGRNSLRLFRI 134 (381)
T ss_dssp EEE--SS-GGG-EEEEEETTTEEEEEET-TS-EEEEE-S--S-EEEEEEEEEEEETTEEEEEEEEEE-CCCT-EEEEEEE
T ss_pred cEecCCCCcccceEEEEeCCCCEEEEcC-CCcEEEeecC--CCcceeeeecceecCCceEEEEEEecCcCCCCeEEEEEe
Confidence 4445543321 46777778888999998 6777777752 344444322 13332 444443 2 47999988
Q ss_pred eCC-eEEEEEecc------CCCcEEEEEEe--c-CCCCEEEEEcCCCcEEEEECC---Cc----eeeeeeecccccceEE
Q 003579 211 RYD-EELVTFTHS------MRGAVTALAFS--S-DGQPLLASGASSGVISIWNLE---KR----RLQSVIREAHDNAIIS 273 (809)
Q Consensus 211 ~~~-~~~~~~~~~------~~~~V~~l~fs--~-dg~~~lasg~~dg~I~iwdl~---~~----~~~~~~~~~h~~~V~~ 273 (809)
... ..+..+... ....++.+|+- + +|..++++...+|.+.-|-+. .+ ++++.+. -.+.+..
T Consensus 135 d~~~g~L~~v~~~~~p~~~~~~e~yGlcly~~~~~g~~ya~v~~k~G~~~Qy~L~~~~~g~v~~~lVR~f~--~~sQ~EG 212 (381)
T PF02333_consen 135 DPDTGELTDVTDPAAPIATDLSEPYGLCLYRSPSTGALYAFVNGKDGRVEQYELTDDGDGKVSATLVREFK--VGSQPEG 212 (381)
T ss_dssp ETTTTEEEE-CBTTC-EE-SSSSEEEEEEEE-TTT--EEEEEEETTSEEEEEEEEE-TTSSEEEEEEEEEE---SS-EEE
T ss_pred cCCCCcceEcCCCCcccccccccceeeEEeecCCCCcEEEEEecCCceEEEEEEEeCCCCcEeeEEEEEec--CCCcceE
Confidence 742 234333221 12346677763 3 466567777888988888764 23 3455554 3457888
Q ss_pred EEEecCCCEEEEEcCCCcEEEEEeeCCCCC-ceeEEecc--CCCCCCeeEEEec--CC-CEEEEEE-CCCCEEEEEeee
Q 003579 274 LHFFANEPVLMSASADNSIKMWIFDTTDGD-PRLLRFRS--GHSAPPLCIRFYA--NG-RHILSAG-QDRAFRLFSVIQ 345 (809)
Q Consensus 274 l~~~~~~~~l~s~s~d~~i~vw~~~~~~~~-~~~~~~~~--~h~~~v~~i~~~~--~~-~~l~s~~-~dg~i~~wd~~~ 345 (809)
|........|+.+-.+.-|.-|+.+...+. .+++.... +....|-.++... ++ .+|+.++ .+++..+|+...
T Consensus 213 CVVDDe~g~LYvgEE~~GIW~y~Aep~~~~~~~~v~~~~g~~l~aDvEGlaly~~~~g~gYLivSsQG~~sf~Vy~r~~ 291 (381)
T PF02333_consen 213 CVVDDETGRLYVGEEDVGIWRYDAEPEGGNDRTLVASADGDGLVADVEGLALYYGSDGKGYLIVSSQGDNSFAVYDREG 291 (381)
T ss_dssp EEEETTTTEEEEEETTTEEEEEESSCCC-S--EEEEEBSSSSB-S-EEEEEEEE-CCC-EEEEEEEGGGTEEEEEESST
T ss_pred EEEecccCCEEEecCccEEEEEecCCCCCCcceeeecccccccccCccceEEEecCCCCeEEEEEcCCCCeEEEEecCC
Confidence 888888889999888765555554443332 33443332 2456788888764 33 3555444 577899998653
No 436
>PRK10115 protease 2; Provisional
Probab=93.99 E-value=15 Score=42.62 Aligned_cols=114 Identities=10% Similarity=0.075 Sum_probs=67.1
Q ss_pred CCEEEEEEcCCCCEEEEEeCC-----CeEEEEEeeCCeEEEEEeccCCCcEEEEEEecCCCCEEEEEcCC-----CcEEE
Q 003579 182 SSISSCVSSPALDVVAVGCSD-----GKIHVHNVRYDEELVTFTHSMRGAVTALAFSSDGQPLLASGASS-----GVISI 251 (809)
Q Consensus 182 ~~I~~l~~sp~~~~la~g~~d-----g~i~iwd~~~~~~~~~~~~~~~~~V~~l~fs~dg~~~lasg~~d-----g~I~i 251 (809)
-.+..+.+||++++||.+... ..|++.|+.+++.+...... .. ..++|.+|++.++.+...+ ..|..
T Consensus 127 ~~l~~~~~Spdg~~la~~~d~~G~E~~~l~v~d~~tg~~l~~~i~~--~~-~~~~w~~D~~~~~y~~~~~~~~~~~~v~~ 203 (686)
T PRK10115 127 YTLGGMAITPDNTIMALAEDFLSRRQYGIRFRNLETGNWYPELLDN--VE-PSFVWANDSWTFYYVRKHPVTLLPYQVWR 203 (686)
T ss_pred EEEeEEEECCCCCEEEEEecCCCcEEEEEEEEECCCCCCCCccccC--cc-eEEEEeeCCCEEEEEEecCCCCCCCEEEE
Confidence 346678899999999876432 45888999888644332221 12 5699999998555554422 46888
Q ss_pred EECCCc--eeeeeeecccccceE-EEEEecCCCEEEEEcC---CCcEEEEEeeC
Q 003579 252 WNLEKR--RLQSVIREAHDNAII-SLHFFANEPVLMSASA---DNSIKMWIFDT 299 (809)
Q Consensus 252 wdl~~~--~~~~~~~~~h~~~V~-~l~~~~~~~~l~s~s~---d~~i~vw~~~~ 299 (809)
+++.++ +....+. ....... ....+.++.+++..+. ++.+.+++.+.
T Consensus 204 h~lgt~~~~d~lv~~-e~~~~~~~~~~~s~d~~~l~i~~~~~~~~~~~l~~~~~ 256 (686)
T PRK10115 204 HTIGTPASQDELVYE-EKDDTFYVSLHKTTSKHYVVIHLASATTSEVLLLDAEL 256 (686)
T ss_pred EECCCChhHCeEEEe-eCCCCEEEEEEEcCCCCEEEEEEECCccccEEEEECcC
Confidence 888887 3333333 2222222 3333447765554332 34566665433
No 437
>PHA03098 kelch-like protein; Provisional
Probab=93.94 E-value=3.2 Score=46.93 Aligned_cols=187 Identities=11% Similarity=0.071 Sum_probs=89.0
Q ss_pred EEEEcCCeEEEEEEcC------CeEEEEEcCccEEEEecCCC-CCCcEEEEEeCCeEEEEECCe-------EEEEECCee
Q 003579 20 SVQRLGTENFVTVSVG------KAFHIYNCAKLNLVLVGPQL-PKKIRALASYRDYTFAAYGNH-------IAVVKRAHQ 85 (809)
Q Consensus 20 ~~~~~~~~~~i~~~~~------~~i~iwd~~~~~~~~~~~~~-~~~I~~la~~~~~~~~a~g~~-------i~vw~~~~~ 85 (809)
+....++..++.++.+ +.+..||..+.+-....+.. +..-.+++...+..|+..|.. +..||....
T Consensus 289 ~~~~~~~~lyv~GG~~~~~~~~~~v~~yd~~~~~W~~~~~~~~~R~~~~~~~~~~~lyv~GG~~~~~~~~~v~~yd~~~~ 368 (534)
T PHA03098 289 GSVVLNNVIYFIGGMNKNNLSVNSVVSYDTKTKSWNKVPELIYPRKNPGVTVFNNRIYVIGGIYNSISLNTVESWKPGES 368 (534)
T ss_pred eEEEECCEEEEECCCcCCCCeeccEEEEeCCCCeeeECCCCCcccccceEEEECCEEEEEeCCCCCEecceEEEEcCCCC
Confidence 4444567777777653 25788999887765443211 222234455566777766632 677775432
Q ss_pred EEE----EccccccEEEEEEeCCEEEEEeCC------CcEEEEEcCCCccccceeeeEEcCCccccEEEEeCCCCCCEEE
Q 003579 86 VAT----WSRHSAKVNLLLLFGEHILSIDID------GNMFIWAFKGIEENLAPVGHVKLDDKFTPTCIMHPDTYLNKVI 155 (809)
Q Consensus 86 ~~~----~~~h~~~V~~l~~~g~~l~s~~~d------g~i~vWd~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~l~ 155 (809)
.-. +............++...+.|+.+ +.+.+||..+.+-.. ....... ....++...++ ...+
T Consensus 369 ~W~~~~~lp~~r~~~~~~~~~~~iYv~GG~~~~~~~~~~v~~yd~~t~~W~~--~~~~p~~--r~~~~~~~~~~--~iyv 442 (534)
T PHA03098 369 KWREEPPLIFPRYNPCVVNVNNLIYVIGGISKNDELLKTVECFSLNTNKWSK--GSPLPIS--HYGGCAIYHDG--KIYV 442 (534)
T ss_pred ceeeCCCcCcCCccceEEEECCEEEEECCcCCCCcccceEEEEeCCCCeeee--cCCCCcc--ccCceEEEECC--EEEE
Confidence 211 111111111222355555555532 357888887654211 1111111 11122233334 3344
Q ss_pred EEeCC--------CeEEEEeCCCCceEE--EEcCCCCCEEEEEEcCCCCEEEEEeCC-----CeEEEEEeeCCe
Q 003579 156 VGSQE--------GSLQLWNISTKKKLY--EFKGWGSSISSCVSSPALDVVAVGCSD-----GKIHVHNVRYDE 214 (809)
Q Consensus 156 ~~~~d--------g~i~lwd~~~~~~~~--~~~~~~~~I~~l~~sp~~~~la~g~~d-----g~i~iwd~~~~~ 214 (809)
+|+.+ ..+.+||..+++=.. .+.........+.+ ++.+++.|+.+ ..+.+||..+++
T Consensus 443 ~GG~~~~~~~~~~~~v~~yd~~~~~W~~~~~~~~~r~~~~~~~~--~~~iyv~GG~~~~~~~~~v~~yd~~~~~ 514 (534)
T PHA03098 443 IGGISYIDNIKVYNIVESYNPVTNKWTELSSLNFPRINASLCIF--NNKIYVVGGDKYEYYINEIEVYDDKTNT 514 (534)
T ss_pred ECCccCCCCCcccceEEEecCCCCceeeCCCCCcccccceEEEE--CCEEEEEcCCcCCcccceeEEEeCCCCE
Confidence 55432 237888887654221 11111111122222 56666666654 457777776554
No 438
>TIGR03118 PEPCTERM_chp_1 conserved hypothetical protein TIGR03118. This model describes and uncharacterized conserved hypothetical protein. Members are found with the C-terminal putative exosortase interaction domain, PEP-CTERM, in Nitrosospira multiformis, Rhodoferax ferrireducens, Solibacter usitatus Ellin6076, and Acidobacteria bacterium Ellin345. It is found without the PEP-CTERM domain in several other species, including Burkholderia ambifaria, Gloeobacter violaceus PCC 7421, and three copies in the Acanthamoeba polyphaga mimivirus.
Probab=93.77 E-value=8 Score=38.58 Aligned_cols=85 Identities=16% Similarity=0.153 Sum_probs=57.8
Q ss_pred CCCCEEEEEeCCCcEEEEECCCCceeeeeeCcccccccCccccEEEEEEcC------CCCEEEEEeCcCeEEEEECCCCc
Q 003579 434 ACGNFAVLGTAGGWIERFNLQSGISRGSYLDMSERSNYAHNGEVVGVACDS------TNTLMISAGYHGDIKVWDFKGRD 507 (809)
Q Consensus 434 ~~g~~l~~g~~~g~i~i~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~------~~~~l~s~~~dg~i~iwd~~~~~ 507 (809)
++++.=+.|...|.|.+||+... .++.+.. .+.-..-++|+..| .+.+|+---.||+|..+|..+++
T Consensus 210 ~~~~d~v~G~G~G~VdvFd~~G~-l~~r~as------~g~LNaPWG~a~APa~FG~~sg~lLVGNFGDG~InaFD~~sG~ 282 (336)
T TIGR03118 210 ADRNDEVAGAGLGYVNVFTLNGQ-LLRRVAS------SGRLNAPWGLAIAPESFGSLSGALLVGNFGDGTINAYDPQSGA 282 (336)
T ss_pred CcccccccCCCcceEEEEcCCCc-EEEEecc------CCcccCCceeeeChhhhCCCCCCeEEeecCCceeEEecCCCCc
Confidence 33444455566688889987644 3343321 24556678888866 46778777789999999999998
Q ss_pred eeeeeecC-------CCeEEEEEee
Q 003579 508 LKSRWEVG-------CSLVKIVYHR 525 (809)
Q Consensus 508 ~~~~~~~~-------~~i~~~~~s~ 525 (809)
.+..+... ..++.+.|..
T Consensus 283 ~~g~L~~~~G~pi~i~GLWgL~fGn 307 (336)
T TIGR03118 283 QLGQLLDPDNHPVKVDGLWSLTFGN 307 (336)
T ss_pred eeeeecCCCCCeEEecCeEEeeeCC
Confidence 88777543 4566777765
No 439
>PF08728 CRT10: CRT10; InterPro: IPR014839 CRT10 is a transcriptional regulator of ribonucleotide reductase (RNR) genes []. RNR catalyses the rate limiting step in dNTP synthesis. Mutations in CRT10 have been shown to enhance hydroxyurea resistance [].
Probab=93.76 E-value=2.3 Score=48.05 Aligned_cols=74 Identities=15% Similarity=0.189 Sum_probs=53.1
Q ss_pred CCCEEEEEEc--CCCCEEEEEeCCCeEEEEEeeCCeE--EEEEeccCCCcEEEEEEecCC--C---CEEEEEcCCCcEEE
Q 003579 181 GSSISSCVSS--PALDVVAVGCSDGKIHVHNVRYDEE--LVTFTHSMRGAVTALAFSSDG--Q---PLLASGASSGVISI 251 (809)
Q Consensus 181 ~~~I~~l~~s--p~~~~la~g~~dg~i~iwd~~~~~~--~~~~~~~~~~~V~~l~fs~dg--~---~~lasg~~dg~I~i 251 (809)
....+.++++ ...++||+++....|.||-...... ...-...+...|-+++|.++. . -.|++++-.|.+.+
T Consensus 163 ~~SaWGLdIh~~~~~rlIAVSsNs~~VTVFaf~l~~~r~~~~~s~~~~hNIP~VSFl~~~~d~~G~v~v~a~dI~G~v~~ 242 (717)
T PF08728_consen 163 GASAWGLDIHDYKKSRLIAVSSNSQEVTVFAFALVDERFYHVPSHQHSHNIPNVSFLDDDLDPNGHVKVVATDISGEVWT 242 (717)
T ss_pred CCceeEEEEEecCcceEEEEecCCceEEEEEEeccccccccccccccccCCCeeEeecCCCCCccceEEEEEeccCcEEE
Confidence 4578899998 7888999999888898887765311 111112235679999998764 1 26777888999999
Q ss_pred EEC
Q 003579 252 WNL 254 (809)
Q Consensus 252 wdl 254 (809)
|++
T Consensus 243 ~~I 245 (717)
T PF08728_consen 243 FKI 245 (717)
T ss_pred EEE
Confidence 887
No 440
>PF10168 Nup88: Nuclear pore component; InterPro: IPR019321 Nup88 can be divided into two structural domains; the N-terminal two-thirds of the protein have no obvious structural motifs. It is, however, where it binds to Nup98; one of the components of the nuclear pore. The C-terminal end is a predicted coiled-coil domain []. Nup88 is over expressed in tumour cells [].
Probab=93.72 E-value=11 Score=43.67 Aligned_cols=76 Identities=9% Similarity=0.108 Sum_probs=52.1
Q ss_pred CCCEEEEEEcCCCCEEEEEeCCCeEEEEEeeC----------CeE--E-EEE-------eccCCCcEEEEEEecCC--CC
Q 003579 181 GSSISSCVSSPALDVVAVGCSDGKIHVHNVRY----------DEE--L-VTF-------THSMRGAVTALAFSSDG--QP 238 (809)
Q Consensus 181 ~~~I~~l~~sp~~~~la~g~~dg~i~iwd~~~----------~~~--~-~~~-------~~~~~~~V~~l~fs~dg--~~ 238 (809)
...|..+.++|+|++||..+..|...+ .+.. |+. . +++ .......|..+.|+|.+ ..
T Consensus 84 ~f~v~~i~~n~~g~~lal~G~~~v~V~-~LP~r~g~~~~~~~g~~~i~Crt~~v~~~~~~~~~~~~i~qv~WhP~s~~~~ 162 (717)
T PF10168_consen 84 LFEVHQISLNPTGSLLALVGPRGVVVL-ELPRRWGKNGEFEDGKKEINCRTVPVDERFFTSNSSLEIKQVRWHPWSESDS 162 (717)
T ss_pred ceeEEEEEECCCCCEEEEEcCCcEEEE-EeccccCccccccCCCcceeEEEEEechhhccCCCCceEEEEEEcCCCCCCC
Confidence 346888999999999999988665443 3321 111 1 111 12224589999999974 23
Q ss_pred EEEEEcCCCcEEEEECCCc
Q 003579 239 LLASGASSGVISIWNLEKR 257 (809)
Q Consensus 239 ~lasg~~dg~I~iwdl~~~ 257 (809)
.|++-..|+.+++||+...
T Consensus 163 ~l~vLtsdn~lR~y~~~~~ 181 (717)
T PF10168_consen 163 HLVVLTSDNTLRLYDISDP 181 (717)
T ss_pred eEEEEecCCEEEEEecCCC
Confidence 7777888999999999754
No 441
>KOG1916 consensus Nuclear protein, contains WD40 repeats [General function prediction only]
Probab=93.69 E-value=0.018 Score=63.87 Aligned_cols=199 Identities=15% Similarity=0.154 Sum_probs=109.9
Q ss_pred EccccccEEEEEE---eCCEEEEEeCCCcEEEEEcCC--CccccceeeeEE----cCCccccEEEEeCCCCCCEEEEEeC
Q 003579 89 WSRHSAKVNLLLL---FGEHILSIDIDGNMFIWAFKG--IEENLAPVGHVK----LDDKFTPTCIMHPDTYLNKVIVGSQ 159 (809)
Q Consensus 89 ~~~h~~~V~~l~~---~g~~l~s~~~dg~i~vWd~~~--~~~~~~~~~~~~----~~~~~~~~~~~~p~~~~~~l~~~~~ 159 (809)
++|..+.|-.+.| +-..+. ..-|.+.|||++- ++......-+.. .....+..|-+.++. -++..+-.
T Consensus 128 ~kgf~G~v~dl~fah~~~pk~~--~~vg~lfVy~vd~l~G~iq~~l~v~~~~p~gs~~~~V~wcp~~~~~--~~ic~~~~ 203 (1283)
T KOG1916|consen 128 AKGFPGGVGDLQFAHTKCPKGR--RLVGELFVYDVDVLQGEIQPQLEVTPITPYGSDPQLVSWCPIAVNK--VYICYGLK 203 (1283)
T ss_pred HhcCCCCcccccccccCChHHH--HHhhhhheeehHhhccccccceEEeecCcCCCCcceeeeccccccc--ceeeeccC
Confidence 5666777777776 112222 3357799999875 332211111111 112333344455555 56777778
Q ss_pred CCeEEEEeCCCCceEEEEcCCCCCEEEEE-----------EcCCCCEEEEEeCCCeEEEEEee-CCe----EEEEEeccC
Q 003579 160 EGSLQLWNISTKKKLYEFKGWGSSISSCV-----------SSPALDVVAVGCSDGKIHVHNVR-YDE----ELVTFTHSM 223 (809)
Q Consensus 160 dg~i~lwd~~~~~~~~~~~~~~~~I~~l~-----------~sp~~~~la~g~~dg~i~iwd~~-~~~----~~~~~~~~~ 223 (809)
++++++.++++... ..+.+|...++.++ .||||..+|.++.||.++.|.+- +|+ ++...+.|.
T Consensus 204 ~~~i~lL~~~ra~~-~l~rsHs~~~~d~a~~~~g~~~l~~lSpDGtv~a~a~~dG~v~f~Qiyi~g~~~~rclhewkphd 282 (1283)
T KOG1916|consen 204 GGEIRLLNINRALR-SLFRSHSQRVTDMAFFAEGVLKLASLSPDGTVFAWAISDGSVGFYQIYITGKIVHRCLHEWKPHD 282 (1283)
T ss_pred CCceeEeeechHHH-HHHHhcCCCcccHHHHhhchhhheeeCCCCcEEEEeecCCccceeeeeeeccccHhhhhccCCCC
Confidence 88999888765433 33455766655543 68999999999999999888764 333 344444443
Q ss_pred CCcEEEEEEecCC-------C-CEEEEEc-CCCcEEEEECCCceeeeeeecccccceEEEEEecCCC------------E
Q 003579 224 RGAVTALAFSSDG-------Q-PLLASGA-SSGVISIWNLEKRRLQSVIREAHDNAIISLHFFANEP------------V 282 (809)
Q Consensus 224 ~~~V~~l~fs~dg-------~-~~lasg~-~dg~I~iwdl~~~~~~~~~~~~h~~~V~~l~~~~~~~------------~ 282 (809)
+.+-.|.-|..+. . .++++++ .+..+++|....-+++ +. ..-..|..+. -+++. .
T Consensus 283 ~~p~vC~lc~~~~~~~v~i~~w~~~Itttd~nre~k~w~~a~w~Cl--l~-~~~d~v~iV~-p~~~~v~~~~~~~~~~~~ 358 (1283)
T KOG1916|consen 283 KHPRVCWLCHKQEILVVSIGKWVLRITTTDVNREEKFWAEAPWQCL--LD-KLIDGVQIVG-PHDGEVTDLSMCQWMTTR 358 (1283)
T ss_pred CCCceeeeeccccccCCccceeEEEEecccCCcceeEeeccchhhh--hh-hcccceEeec-CCCccccchhhhHHHHHH
Confidence 3433333344321 1 1344444 4567899987665554 11 1122233333 22221 2
Q ss_pred EEEEcCCCcEEEEE
Q 003579 283 LMSASADNSIKMWI 296 (809)
Q Consensus 283 l~s~s~d~~i~vw~ 296 (809)
+++-+.++.|++|.
T Consensus 359 ~v~r~v~~~i~~~q 372 (1283)
T KOG1916|consen 359 LVSRSVDGTIKIWQ 372 (1283)
T ss_pred HHHhhhHHHHHHhh
Confidence 34456688888883
No 442
>PLN00033 photosystem II stability/assembly factor; Provisional
Probab=93.39 E-value=13 Score=39.76 Aligned_cols=149 Identities=11% Similarity=0.089 Sum_probs=83.3
Q ss_pred EEEEEEcCCCCEEEEEeCCCeEEEEEeeCCeEE-EEEeccCCCcEEEEEEecCCCCEEEEEcCCCcEEEEECCCce----
Q 003579 184 ISSCVSSPALDVVAVGCSDGKIHVHNVRYDEEL-VTFTHSMRGAVTALAFSSDGQPLLASGASSGVISIWNLEKRR---- 258 (809)
Q Consensus 184 I~~l~~sp~~~~la~g~~dg~i~iwd~~~~~~~-~~~~~~~~~~V~~l~fs~dg~~~lasg~~dg~I~iwdl~~~~---- 258 (809)
...+..++++.+++++..-..++-|| .++.. ..........++++.|.+++. +++++ ..|.+. +....++
T Consensus 241 f~~v~~~~dG~~~~vg~~G~~~~s~d--~G~~~W~~~~~~~~~~l~~v~~~~dg~-l~l~g-~~G~l~-~S~d~G~~~~~ 315 (398)
T PLN00033 241 FSTVNRSPDGDYVAVSSRGNFYLTWE--PGQPYWQPHNRASARRIQNMGWRADGG-LWLLT-RGGGLY-VSKGTGLTEED 315 (398)
T ss_pred eeeEEEcCCCCEEEEECCccEEEecC--CCCcceEEecCCCccceeeeeEcCCCC-EEEEe-CCceEE-EecCCCCcccc
Confidence 45566788888888776533333343 23322 223333356799999999998 55544 556654 4444443
Q ss_pred -eeeeeecc-cccceEEEEEecCCCEEEEEcCCCcEEEEEeeCCCCCceeEEeccCCCCCCeeEEEecCCCEEEEEECCC
Q 003579 259 -LQSVIREA-HDNAIISLHFFANEPVLMSASADNSIKMWIFDTTDGDPRLLRFRSGHSAPPLCIRFYANGRHILSAGQDR 336 (809)
Q Consensus 259 -~~~~~~~~-h~~~V~~l~~~~~~~~l~s~s~d~~i~vw~~~~~~~~~~~~~~~~~h~~~v~~i~~~~~~~~l~s~~~dg 336 (809)
........ -...+.++.|.+++..+++ +..|.+... ......+........-....+.+.|.++++-+ ..+.+|
T Consensus 316 ~~f~~~~~~~~~~~l~~v~~~~d~~~~a~-G~~G~v~~s--~D~G~tW~~~~~~~~~~~~ly~v~f~~~~~g~-~~G~~G 391 (398)
T PLN00033 316 FDFEEADIKSRGFGILDVGYRSKKEAWAA-GGSGILLRS--TDGGKSWKRDKGADNIAANLYSVKFFDDKKGF-VLGNDG 391 (398)
T ss_pred cceeecccCCCCcceEEEEEcCCCcEEEE-ECCCcEEEe--CCCCcceeEccccCCCCcceeEEEEcCCCceE-EEeCCc
Confidence 12222211 1235889999988765554 556766654 22222223332223445677889887766544 455677
Q ss_pred CEEEE
Q 003579 337 AFRLF 341 (809)
Q Consensus 337 ~i~~w 341 (809)
.|.-|
T Consensus 392 ~il~~ 396 (398)
T PLN00033 392 VLLRY 396 (398)
T ss_pred EEEEe
Confidence 66544
No 443
>COG3823 Glutamine cyclotransferase [Posttranslational modification, protein turnover, chaperones]
Probab=93.36 E-value=6.1 Score=36.88 Aligned_cols=173 Identities=14% Similarity=0.108 Sum_probs=99.3
Q ss_pred eCCEEEEEeCC--CcEEEEEcCCCccccceeeeEEcCC--ccccEEEEeCCCCCCEE-EEEeCCCeEEEEeCCCCceEEE
Q 003579 102 FGEHILSIDID--GNMFIWAFKGIEENLAPVGHVKLDD--KFTPTCIMHPDTYLNKV-IVGSQEGSLQLWNISTKKKLYE 176 (809)
Q Consensus 102 ~g~~l~s~~~d--g~i~vWd~~~~~~~~~~~~~~~~~~--~~~~~~~~~p~~~~~~l-~~~~~dg~i~lwd~~~~~~~~~ 176 (809)
+|..+.+.+.- ..|++||+.+++. +...+... -+.-. +..-+ +.+ ...-.+|.-..+|..+.+.+..
T Consensus 55 ~g~i~esTG~yg~S~ir~~~L~~gq~----~~s~~l~~~~~FgEG--it~~g--d~~y~LTw~egvaf~~d~~t~~~lg~ 126 (262)
T COG3823 55 DGHILESTGLYGFSKIRVSDLTTGQE----IFSEKLAPDTVFGEG--ITKLG--DYFYQLTWKEGVAFKYDADTLEELGR 126 (262)
T ss_pred CCEEEEeccccccceeEEEeccCceE----EEEeecCCccccccc--eeecc--ceEEEEEeccceeEEEChHHhhhhcc
Confidence 45555665553 3499999998877 33333321 11111 11111 222 2334678888999999888877
Q ss_pred EcCCCCCEEEEEEcCCCCEEEEEeCCCeEEEEEeeCCeEEEEEe----ccCCCcEEEEEEecCCCCEEEEEcCCCcEEEE
Q 003579 177 FKGWGSSISSCVSSPALDVVAVGCSDGKIHVHNVRYDEELVTFT----HSMRGAVTALAFSSDGQPLLASGASSGVISIW 252 (809)
Q Consensus 177 ~~~~~~~I~~l~~sp~~~~la~g~~dg~i~iwd~~~~~~~~~~~----~~~~~~V~~l~fs~dg~~~lasg~~dg~I~iw 252 (809)
+.-.. .=..+ ..|++.|..+....+++.-|.++-....++. +..-..++-+.|- ||. +.|---.+..|...
T Consensus 127 ~~y~G-eGWgL--t~d~~~LimsdGsatL~frdP~tfa~~~~v~VT~~g~pv~~LNELE~V-dG~-lyANVw~t~~I~rI 201 (262)
T COG3823 127 FSYEG-EGWGL--TSDDKNLIMSDGSATLQFRDPKTFAELDTVQVTDDGVPVSKLNELEWV-DGE-LYANVWQTTRIARI 201 (262)
T ss_pred cccCC-cceee--ecCCcceEeeCCceEEEecCHHHhhhcceEEEEECCeecccccceeee-ccE-EEEeeeeecceEEE
Confidence 65422 22233 3456667877777778887877554443333 2212334455554 455 55544455567777
Q ss_pred ECCCceeeeeee-----------cccccceEEEEEecCCCEEEEEc
Q 003579 253 NLEKRRLQSVIR-----------EAHDNAIISLHFFANEPVLMSAS 287 (809)
Q Consensus 253 dl~~~~~~~~~~-----------~~h~~~V~~l~~~~~~~~l~s~s 287 (809)
|.++|+.+..+. ..|..-.+.+++.|++..++..+
T Consensus 202 ~p~sGrV~~widlS~L~~~~~~~~~~~nvlNGIA~~~~~~r~~iTG 247 (262)
T COG3823 202 DPDSGRVVAWIDLSGLLKELNLDKSNDNVLNGIAHDPQQDRFLITG 247 (262)
T ss_pred cCCCCcEEEEEEccCCchhcCccccccccccceeecCcCCeEEEec
Confidence 777777666554 23556778899999885444443
No 444
>KOG1898 consensus Splicing factor 3b, subunit 3 [RNA processing and modification]
Probab=93.30 E-value=20 Score=41.83 Aligned_cols=107 Identities=9% Similarity=0.096 Sum_probs=66.4
Q ss_pred cCCCeEEEEEeeCCCEEEEEeCCCeEEEEEcCCCeEEEEEe---cCCCCeeeEEECCCC------CEEEEEeCCCeEEEE
Q 003579 514 VGCSLVKIVYHRVNGLLATVADDLVIRLFDVVALRMVRKFE---GHTDRITDFCFSEDG------KWLLSSGMDGSLRIW 584 (809)
Q Consensus 514 ~~~~i~~~~~s~~~~~la~~~~d~~I~v~d~~~~~~~~~~~---~h~~~I~~l~fspdg------~~l~s~s~D~~I~vw 584 (809)
.+..+.-+.-.-+...++++..++.+.-+.......+..+. .-...|.++++.++. ++++.++.|+++++.
T Consensus 536 ~P~~~~Iv~~avnr~qiVvalSngelvyfe~d~sgql~E~~er~tl~~~vac~ai~~~~~g~krsrfla~a~~d~~vrii 615 (1205)
T KOG1898|consen 536 TPERVRIVKCAVNRRQIVVALSNGELVYFEGDVSGQLNEFTERVTLSTDVACLAIGQDPEGEKRSRFLALASVDNMVRII 615 (1205)
T ss_pred CCCceEEEEEeecceEEEEEccCCeEEEEEeccCccceeeeeeeeeceeehhhccCCCCcchhhcceeeeeccccceeEE
Confidence 33444433333345677777778877777664333333442 234668899998875 689999999999999
Q ss_pred EcCCccEEEEeee---CcceEEEEEc---CCCC------eEEEEEeCC
Q 003579 585 DVILARQIDAIHV---DVSITALSLS---PNMD------VLATAHVDQ 620 (809)
Q Consensus 585 d~~~~~~i~~~~~---~~~v~~l~~s---pdg~------~lat~~~d~ 620 (809)
.+.-..++..+.. ..++.++.+- .++. +|-+|-.+|
T Consensus 616 sL~p~d~l~~ls~q~l~~~~~s~~iv~~~~~~~~~~~~L~l~~GL~NG 663 (1205)
T KOG1898|consen 616 SLDPSDCLQPLSVQGLSSPPESLCIVEMEATGGTDVAQLYLLIGLRNG 663 (1205)
T ss_pred EecCcceEEEccccccCCCccceEEEEecccCCccceeEEEEeccccc
Confidence 9987777766653 2334444443 3332 455555555
No 445
>KOG3616 consensus Selective LIM binding factor [Transcription]
Probab=92.91 E-value=4.1 Score=45.03 Aligned_cols=71 Identities=17% Similarity=0.216 Sum_probs=50.5
Q ss_pred ecCCCCeeeEEECCCCCEEEEEeCCCeEEEEEcCCccEEEEeeeCcceEEEEEcCCCCeEEEEEeCCCeEEEeecC
Q 003579 554 EGHTDRITDFCFSEDGKWLLSSGMDGSLRIWDVILARQIDAIHVDVSITALSLSPNMDVLATAHVDQNGVYLWVNR 629 (809)
Q Consensus 554 ~~h~~~I~~l~fspdg~~l~s~s~D~~I~vwd~~~~~~i~~~~~~~~v~~l~~spdg~~lat~~~d~~~i~lW~~~ 629 (809)
..|.+.|.-+.....+..|..-...-.+.++|+.+.+..-.+ +-++-+.|-|-.+.++.-..|. +.+|-|-
T Consensus 334 inh~~~vdwielne~~~kllfrdkk~kl~l~di~s~qksmil---nfcsymqwvp~sdvivaqn~dn--l~iwyn~ 404 (1636)
T KOG3616|consen 334 INHEGAVDWIELNERAHKLLFRDKKLKLHLVDIESCQKSMIL---NFCSYMQWVPGSDVIVAQNGDN--LCIWYNI 404 (1636)
T ss_pred ccccccccceeccchhhhhhcccccceeEEEEcccchHHHHH---HHhhhheeccCcceEEecCCCc--eEEEecC
Confidence 348888888888887777776666667888888764321111 1266789999999888877664 9999763
No 446
>PF14870 PSII_BNR: Photosynthesis system II assembly factor YCF48; PDB: 2XBG_A.
Probab=92.81 E-value=13 Score=38.03 Aligned_cols=145 Identities=10% Similarity=0.043 Sum_probs=77.5
Q ss_pred CccccEEEEEEcCCCCEEEEEeCcCeEEEEECCCC-ceeeeeecCCCeEEEEEeeCCCEEEEEeCCCeEEEEE-cCCCeE
Q 003579 472 AHNGEVVGVACDSTNTLMISAGYHGDIKVWDFKGR-DLKSRWEVGCSLVKIVYHRVNGLLATVADDLVIRLFD-VVALRM 549 (809)
Q Consensus 472 ~h~~~v~~l~~~~~~~~l~s~~~dg~i~iwd~~~~-~~~~~~~~~~~i~~~~~s~~~~~la~~~~d~~I~v~d-~~~~~~ 549 (809)
.-.+.+..+..+++|++++++.....+.-||--.. =..+.......|..|.|.|++.+.+++ ..|.|+.=+ ....+.
T Consensus 142 ~~~gs~~~~~r~~dG~~vavs~~G~~~~s~~~G~~~w~~~~r~~~~riq~~gf~~~~~lw~~~-~Gg~~~~s~~~~~~~~ 220 (302)
T PF14870_consen 142 ETSGSINDITRSSDGRYVAVSSRGNFYSSWDPGQTTWQPHNRNSSRRIQSMGFSPDGNLWMLA-RGGQIQFSDDPDDGET 220 (302)
T ss_dssp S----EEEEEE-TTS-EEEEETTSSEEEEE-TT-SS-EEEE--SSS-EEEEEE-TTS-EEEEE-TTTEEEEEE-TTEEEE
T ss_pred CCcceeEeEEECCCCcEEEEECcccEEEEecCCCccceEEccCccceehhceecCCCCEEEEe-CCcEEEEccCCCCccc
Confidence 44577888999999998888877666667774432 222333345899999999998877755 888888877 222222
Q ss_pred EEE-Ee---cCCCCeeeEEECCCCCEEEEEeCCCeEEEEEcCCccEEEEeee----CcceEEEEEcCCCCeEEEEEeCC
Q 003579 550 VRK-FE---GHTDRITDFCFSEDGKWLLSSGMDGSLRIWDVILARQIDAIHV----DVSITALSLSPNMDVLATAHVDQ 620 (809)
Q Consensus 550 ~~~-~~---~h~~~I~~l~fspdg~~l~s~s~D~~I~vwd~~~~~~i~~~~~----~~~v~~l~~spdg~~lat~~~d~ 620 (809)
... +. .-.-.+.+++|.+++...++|+ .|++ +.....|+-=...+. +.....+.|.+..+-+|. +.+|
T Consensus 221 w~~~~~~~~~~~~~~ld~a~~~~~~~wa~gg-~G~l-~~S~DgGktW~~~~~~~~~~~n~~~i~f~~~~~gf~l-G~~G 296 (302)
T PF14870_consen 221 WSEPIIPIKTNGYGILDLAYRPPNEIWAVGG-SGTL-LVSTDGGKTWQKDRVGENVPSNLYRIVFVNPDKGFVL-GQDG 296 (302)
T ss_dssp E---B-TTSS--S-EEEEEESSSS-EEEEES-TT-E-EEESSTTSS-EE-GGGTTSSS---EEEEEETTEEEEE--STT
T ss_pred cccccCCcccCceeeEEEEecCCCCEEEEeC-CccE-EEeCCCCccceECccccCCCCceEEEEEcCCCceEEE-CCCc
Confidence 111 11 1223378999999988777666 4433 345555654443332 445888999766555544 4555
No 447
>KOG2377 consensus Uncharacterized conserved protein [Function unknown]
Probab=92.75 E-value=7.8 Score=40.56 Aligned_cols=118 Identities=14% Similarity=0.116 Sum_probs=70.9
Q ss_pred CCCeEEEEEcCCCCEEEEEeCCCcEEEEECCCCceeeeeeCcccccccCccccEEEEEEcCCCCEEEEEeCcCeEEEEEC
Q 003579 424 PTAVKACTISACGNFAVLGTAGGWIERFNLQSGISRGSYLDMSERSNYAHNGEVVGVACDSTNTLMISAGYHGDIKVWDF 503 (809)
Q Consensus 424 ~~~v~~v~~s~~g~~l~~g~~~g~i~i~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~l~s~~~dg~i~iwd~ 503 (809)
.++|.++.||+|.+.+++--.+..|.+++.+.......+... -...+..|.+..|... .-++.....| +.+|..
T Consensus 66 ~G~I~SIkFSlDnkilAVQR~~~~v~f~nf~~d~~~l~~~~~----ck~k~~~IlGF~W~~s-~e~A~i~~~G-~e~y~v 139 (657)
T KOG2377|consen 66 KGEIKSIKFSLDNKILAVQRTSKTVDFCNFIPDNSQLEYTQE----CKTKNANILGFCWTSS-TEIAFITDQG-IEFYQV 139 (657)
T ss_pred CCceeEEEeccCcceEEEEecCceEEEEecCCCchhhHHHHH----hccCcceeEEEEEecC-eeEEEEecCC-eEEEEE
Confidence 379999999999999999999999999998655444333210 0123445889999866 3444444333 555544
Q ss_pred CCC--ceeeeeecCCCeEEEEEeeCCCEEEEEe--CCCeEEEEEcCCC
Q 003579 504 KGR--DLKSRWEVGCSLVKIVYHRVNGLLATVA--DDLVIRLFDVVAL 547 (809)
Q Consensus 504 ~~~--~~~~~~~~~~~i~~~~~s~~~~~la~~~--~d~~I~v~d~~~~ 547 (809)
... .+...-.+...|.-..|.++.+.+..++ ..+++.=+-+.++
T Consensus 140 ~pekrslRlVks~~~nvnWy~yc~et~v~LL~t~~~~n~lnpf~~~~~ 187 (657)
T KOG2377|consen 140 LPEKRSLRLVKSHNLNVNWYMYCPETAVILLSTTVLENVLNPFHFRAG 187 (657)
T ss_pred chhhhhhhhhhhcccCccEEEEccccceEeeeccccccccccEEEeec
Confidence 322 2211222335677778888777544433 3344433444433
No 448
>COG5167 VID27 Protein involved in vacuole import and degradation [Intracellular trafficking and secretion]
Probab=92.66 E-value=2.4 Score=44.79 Aligned_cols=137 Identities=15% Similarity=0.187 Sum_probs=88.8
Q ss_pred EEeCCCeEEEEeCCCCceEEEEcCCCCCEEEEEEcCCCC-------EEEEEeCCCeEEEEEeeC-CeEEEEEec--c-CC
Q 003579 156 VGSQEGSLQLWNISTKKKLYEFKGWGSSISSCVSSPALD-------VVAVGCSDGKIHVHNVRY-DEELVTFTH--S-MR 224 (809)
Q Consensus 156 ~~~~dg~i~lwd~~~~~~~~~~~~~~~~I~~l~~sp~~~-------~la~g~~dg~i~iwd~~~-~~~~~~~~~--~-~~ 224 (809)
.|.....++-.|++.|+.+.....|... -+.|.|+.+ .-++|-++..|.-.|.+- |..+..... - .+
T Consensus 485 dg~~~~kLykmDIErGkvveeW~~~ddv--vVqy~p~~kf~qmt~eqtlvGlS~~svFrIDPR~~gNKi~v~esKdY~tK 562 (776)
T COG5167 485 DGGERDKLYKMDIERGKVVEEWDLKDDV--VVQYNPYFKFQQMTDEQTLVGLSDYSVFRIDPRARGNKIKVVESKDYKTK 562 (776)
T ss_pred cCCCcccceeeecccceeeeEeecCCcc--eeecCCchhHHhcCccceEEeecccceEEecccccCCceeeeeehhcccc
Confidence 4556677888899999999999887765 567777532 234566666666666553 222222111 0 01
Q ss_pred CcEEEEEEecCCCCEEEEEcCCCcEEEEECCCceeeeeeecccccceEEEEEecCCCEEEEEcCCCcEEEEEee
Q 003579 225 GAVTALAFSSDGQPLLASGASSGVISIWNLEKRRLQSVIREAHDNAIISLHFFANEPVLMSASADNSIKMWIFD 298 (809)
Q Consensus 225 ~~V~~l~fs~dg~~~lasg~~dg~I~iwdl~~~~~~~~~~~~h~~~V~~l~~~~~~~~l~s~s~d~~i~vw~~~ 298 (809)
....|..-...| ++|+|+..|.|++||--..+....+. +....|..+..+.+|.++++.+. +.+.+-++.
T Consensus 563 n~Fss~~tTesG--yIa~as~kGDirLyDRig~rAKtalP-~lG~aIk~idvta~Gk~ilaTCk-~yllL~d~~ 632 (776)
T COG5167 563 NKFSSGMTTESG--YIAAASRKGDIRLYDRIGKRAKTALP-GLGDAIKHIDVTANGKHILATCK-NYLLLTDVP 632 (776)
T ss_pred ccccccccccCc--eEEEecCCCceeeehhhcchhhhcCc-ccccceeeeEeecCCcEEEEeec-ceEEEEecc
Confidence 223333333334 79999999999999965544444555 77889999999999997776664 455555543
No 449
>KOG2280 consensus Vacuolar assembly/sorting protein VPS16 [Intracellular trafficking, secretion, and vesicular transport]
Probab=92.65 E-value=11 Score=42.33 Aligned_cols=62 Identities=19% Similarity=0.301 Sum_probs=45.4
Q ss_pred CCCeEEEEEeeCCCEEEEEeCCCeEEEEEcCCCeEEEEEecCC-CCeeeEEECCCCCEEEEEeCCCeEEEEE
Q 003579 515 GCSLVKIVYHRVNGLLATVADDLVIRLFDVVALRMVRKFEGHT-DRITDFCFSEDGKWLLSSGMDGSLRIWD 585 (809)
Q Consensus 515 ~~~i~~~~~s~~~~~la~~~~d~~I~v~d~~~~~~~~~~~~h~-~~I~~l~fspdg~~l~s~s~D~~I~vwd 585 (809)
.+.+..+..||+.++||.-...|.|.+.+++..+....+.... .+-..++| ++.|..+..|+
T Consensus 216 ~~~~~ki~VS~n~~~laLyt~~G~i~~vs~D~~~~lce~~~~~~~~p~qm~W---------cgndaVvl~~e 278 (829)
T KOG2280|consen 216 NSSVVKISVSPNRRFLALYTETGKIWVVSIDLSQILCEFNCTDHDPPKQMAW---------CGNDAVVLSWE 278 (829)
T ss_pred CceEEEEEEcCCcceEEEEecCCcEEEEecchhhhhhccCCCCCCchHhcee---------ecCCceEEEEe
Confidence 4788899999999999999999999999998888777776221 22234555 44455555565
No 450
>PF14727 PHTB1_N: PTHB1 N-terminus
Probab=92.42 E-value=18 Score=38.82 Aligned_cols=177 Identities=9% Similarity=0.097 Sum_probs=95.6
Q ss_pred CCEEEEEeCCCcEEEEECCCCceeeeeeCcccccccCccccEEEEEEcCCCCEEEEEeCcCeEEEEECCC----------
Q 003579 436 GNFAVLGTAGGWIERFNLQSGISRGSYLDMSERSNYAHNGEVVGVACDSTNTLMISAGYHGDIKVWDFKG---------- 505 (809)
Q Consensus 436 g~~l~~g~~~g~i~i~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~l~s~~~dg~i~iwd~~~---------- 505 (809)
-.++.+-+.||.+.+|+-..-.....++. .-.. ..+++.+....+++++.+..+.-|.+..
T Consensus 145 ~~~IcVQS~DG~L~~feqe~~~f~~~lp~------~llP---gPl~Y~~~tDsfvt~sss~~l~~Yky~~La~~s~~~~~ 215 (418)
T PF14727_consen 145 RDFICVQSMDGSLSFFEQESFAFSRFLPD------FLLP---GPLCYCPRTDSFVTASSSWTLECYKYQDLASASEASSR 215 (418)
T ss_pred ceEEEEEecCceEEEEeCCcEEEEEEcCC------CCCC---cCeEEeecCCEEEEecCceeEEEecHHHhhhccccccc
Confidence 36889999999999999877665444431 1222 3466777888899999988998887521
Q ss_pred -----------C--ceeeeeecCCCeEEEEEeeC---CCEEEEEeCCCeEEEEEcCCCeEE--EEEecCCCCee--eE--
Q 003579 506 -----------R--DLKSRWEVGCSLVKIVYHRV---NGLLATVADDLVIRLFDVVALRMV--RKFEGHTDRIT--DF-- 563 (809)
Q Consensus 506 -----------~--~~~~~~~~~~~i~~~~~s~~---~~~la~~~~d~~I~v~d~~~~~~~--~~~~~h~~~I~--~l-- 563 (809)
. ....++..+..+..+..... ...+++-+ ..++.+.+-. |++. +++........ .+
T Consensus 216 ~~~~~~~~~~~k~l~~dWs~nlGE~~l~i~v~~~~~~~~~IvvLg-er~Lf~l~~~-G~l~~~krLd~~p~~~~~Y~~~~ 293 (418)
T PF14727_consen 216 QSGTEQDISSGKKLNPDWSFNLGEQALDIQVVRFSSSESDIVVLG-ERSLFCLKDN-GSLRFQKRLDYNPSCFCPYRVPW 293 (418)
T ss_pred cccccccccccccccceeEEECCceeEEEEEEEcCCCCceEEEEe-cceEEEEcCC-CeEEEEEecCCceeeEEEEEeec
Confidence 0 11223344455666555442 22233222 4455555543 4332 23322211111 11
Q ss_pred EECCCC-CEEEEEeCCCeEEEEEcCCccEEEEeeeCcceEEEE---EcCCCCeEEEEEeCCCeEEEe
Q 003579 564 CFSEDG-KWLLSSGMDGSLRIWDVILARQIDAIHVDVSITALS---LSPNMDVLATAHVDQNGVYLW 626 (809)
Q Consensus 564 ~fspdg-~~l~s~s~D~~I~vwd~~~~~~i~~~~~~~~v~~l~---~spdg~~lat~~~d~~~i~lW 626 (809)
...|+. ..++.++.++++.||.= .+++...+....+.++. |..-...|++-+.+| .+.+-
T Consensus 294 ~~~~~~~~~llV~t~t~~LlVy~d--~~L~WsA~l~~~PVal~v~~~~~~~G~IV~Ls~~G-~L~v~ 357 (418)
T PF14727_consen 294 YNEPSTRLNLLVGTHTGTLLVYED--TTLVWSAQLPHVPVALSVANFNGLKGLIVSLSDEG-QLSVS 357 (418)
T ss_pred ccCCCCceEEEEEecCCeEEEEeC--CeEEEecCCCCCCEEEEecccCCCCceEEEEcCCC-cEEEE
Confidence 112221 24777888999999973 33443333333322333 333344677777777 36553
No 451
>PF13449 Phytase-like: Esterase-like activity of phytase
Probab=92.17 E-value=8.2 Score=40.26 Aligned_cols=155 Identities=17% Similarity=0.216 Sum_probs=91.9
Q ss_pred ccccEEEEEEcCCCCEEEEEeCcCe------EEEEECCC--C-----ceeeeee---cC--------CCeEEEEEeeCCC
Q 003579 473 HNGEVVGVACDSTNTLMISAGYHGD------IKVWDFKG--R-----DLKSRWE---VG--------CSLVKIVYHRVNG 528 (809)
Q Consensus 473 h~~~v~~l~~~~~~~~l~s~~~dg~------i~iwd~~~--~-----~~~~~~~---~~--------~~i~~~~~s~~~~ 528 (809)
.-+.+.++.+.+++..+++.+.+|. +..+++.. + ....... .. ...-++++.+++.
T Consensus 18 ~~GGlSgl~~~~~~~~~~avSD~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~~~G~~~~~~~~D~Egi~~~~~g~ 97 (326)
T PF13449_consen 18 PFGGLSGLDYDPDDGRFYAVSDRGPNKGPPRFYTFRIDYDQGGIGGVTILDMIPLRDPDGQPFPKNGLDPEGIAVPPDGS 97 (326)
T ss_pred ccCcEeeEEEeCCCCEEEEEECCCCCCCCCcEEEEEeeccCCCccceEeccceeccCCCCCcCCcCCCChhHeEEecCCC
Confidence 3466789999976666666777777 55555443 1 0111111 11 1344788877888
Q ss_pred EEEEEeCC------CeEEEEEcCCCeEEEEEe---------------cCCCCeeeEEECCCCCEEEEEeC-----CC---
Q 003579 529 LLATVADD------LVIRLFDVVALRMVRKFE---------------GHTDRITDFCFSEDGKWLLSSGM-----DG--- 579 (809)
Q Consensus 529 ~la~~~~d------~~I~v~d~~~~~~~~~~~---------------~h~~~I~~l~fspdg~~l~s~s~-----D~--- 579 (809)
++++.-.+ ..|+.++.. ++....+. ......-+|+++|||+.|.++.+ |+
T Consensus 98 ~~is~E~~~~~~~~p~I~~~~~~-G~~~~~~~vP~~~~~~~~~~~~~~~N~G~E~la~~~dG~~l~~~~E~~l~~d~~~~ 176 (326)
T PF13449_consen 98 FWISSEGGRTGGIPPRIRRFDLD-GRVIRRFPVPAAFLPDANGTSGRRNNRGFEGLAVSPDGRTLFAAMESPLKQDGPRA 176 (326)
T ss_pred EEEEeCCccCCCCCCEEEEECCC-CcccceEccccccccccCccccccCCCCeEEEEECCCCCEEEEEECccccCCCccc
Confidence 77777667 788888877 66555441 12345789999999996665542 22
Q ss_pred ------eEEEE--EcCC-ccEEEEee--eC--------cceEEEEEcCCCCeEEEEEe----CCCeEEEeec
Q 003579 580 ------SLRIW--DVIL-ARQIDAIH--VD--------VSITALSLSPNMDVLATAHV----DQNGVYLWVN 628 (809)
Q Consensus 580 ------~I~vw--d~~~-~~~i~~~~--~~--------~~v~~l~~spdg~~lat~~~----d~~~i~lW~~ 628 (809)
.+|++ |..+ +.....+. .. ..++.+.+-+++++|+.-=. .+..++|+.+
T Consensus 177 ~~~~~~~~ri~~~d~~~~~~~~~~~~y~ld~~~~~~~~~~isd~~al~d~~lLvLER~~~~~~~~~~ri~~v 248 (326)
T PF13449_consen 177 NPDNGSPLRILRYDPKTPGEPVAEYAYPLDPPPTAPGDNGISDIAALPDGRLLVLERDFSPGTGNYKRIYRV 248 (326)
T ss_pred ccccCceEEEEEecCCCCCccceEEEEeCCccccccCCCCceeEEEECCCcEEEEEccCCCCccceEEEEEE
Confidence 14554 5544 33333332 22 34889999999997765433 2234555544
No 452
>KOG1896 consensus mRNA cleavage and polyadenylation factor II complex, subunit CFT1 (CPSF subunit) [RNA processing and modification]
Probab=91.89 E-value=33 Score=40.85 Aligned_cols=147 Identities=17% Similarity=0.139 Sum_probs=76.6
Q ss_pred CEEEEEeC---------CCcEEEEECCC-----CceeeeeeCcccccccCccccEEEEEEcCCCCEEEEEeCcCeEEEEE
Q 003579 437 NFAVLGTA---------GGWIERFNLQS-----GISRGSYLDMSERSNYAHNGEVVGVACDSTNTLMISAGYHGDIKVWD 502 (809)
Q Consensus 437 ~~l~~g~~---------~g~i~i~~~~~-----~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~l~s~~~dg~i~iwd 502 (809)
.++++|+. .|.+++|++-. |+........ ..-....+++|..++= -+|. |+++ ...+|.+|+
T Consensus 1047 ~ylavGT~~~~gEDv~~RGr~hi~diIeVVPepgkP~t~~KlK-el~~eE~KGtVsavce-V~G~-l~~~-~GqKI~v~~ 1122 (1366)
T KOG1896|consen 1047 PYLAVGTAFIQGEDVPARGRIHIFDIIEVVPEPGKPFTKNKLK-ELYIEEQKGTVSAVCE-VRGH-LLSS-QGQKIIVRK 1122 (1366)
T ss_pred ceEEEEEeecccccccCcccEEEEEEEEecCCCCCCcccceee-eeehhhcccceEEEEE-eccE-EEEc-cCcEEEEEE
Confidence 47777754 48999999733 2221111100 0001245667776653 2454 4433 336799999
Q ss_pred C-CCCceeeeeecCCCeEEEEEeeCCCEEEEEeCCCeEEEEEcCCCeE-EEEEec--CCCCeeeEEECCCCC--EEEEEe
Q 003579 503 F-KGRDLKSRWEVGCSLVKIVYHRVNGLLATVADDLVIRLFDVVALRM-VRKFEG--HTDRITDFCFSEDGK--WLLSSG 576 (809)
Q Consensus 503 ~-~~~~~~~~~~~~~~i~~~~~s~~~~~la~~~~d~~I~v~d~~~~~~-~~~~~~--h~~~I~~l~fspdg~--~l~s~s 576 (809)
+ +...++..--..-++.-.....-.+++..|.--..|.+.-.+..-. +.-+.. ..-.+.++.|--||. +++++.
T Consensus 1123 l~r~~~ligVaFiD~~~yv~s~~~vknlIl~gDV~ksisfl~fqeep~rlsL~srd~~~l~v~s~EFLVdg~~L~flvsD 1202 (1366)
T KOG1896|consen 1123 LDRDSELIGVAFIDLPLYVHSMKVVKNLILAGDVMKSISFLGFQEEPYRLSLLSRDFEPLNVYSTEFLVDGSNLSFLVSD 1202 (1366)
T ss_pred eccCCcceeeEEeccceeEEehhhhhhheehhhhhhceEEEEEccCceEEEEeecCCchhhceeeeeEEcCCeeEEEEEc
Confidence 8 4444433222222222222222355666666556666554433211 111211 123477788877775 567788
Q ss_pred CCCeEEEEEcC
Q 003579 577 MDGSLRIWDVI 587 (809)
Q Consensus 577 ~D~~I~vwd~~ 587 (809)
.|+.|++|-..
T Consensus 1203 a~rNi~vy~Y~ 1213 (1366)
T KOG1896|consen 1203 ADRNIHVYMYA 1213 (1366)
T ss_pred CCCcEEEEEeC
Confidence 89999988653
No 453
>PF07569 Hira: TUP1-like enhancer of split; InterPro: IPR011494 The Hira proteins are found in a range of eukaryotes and are implicated in the assembly of repressive chromatin. These proteins also contain IPR001680 from INTERPRO.; GO: 0006355 regulation of transcription, DNA-dependent, 0005634 nucleus
Probab=91.73 E-value=0.85 Score=44.20 Aligned_cols=63 Identities=21% Similarity=0.302 Sum_probs=48.5
Q ss_pred ECCCCCEEEEEeCCCeEEEEEcCCccEEEEe---------------eeCcceEEEEEcCCCCeEEEEEeCCCeEEEeecC
Q 003579 565 FSEDGKWLLSSGMDGSLRIWDVILARQIDAI---------------HVDVSITALSLSPNMDVLATAHVDQNGVYLWVNR 629 (809)
Q Consensus 565 fspdg~~l~s~s~D~~I~vwd~~~~~~i~~~---------------~~~~~v~~l~~spdg~~lat~~~d~~~i~lW~~~ 629 (809)
+..++.||++.+.+|.+++||+.+++.+..- .....|.++.++.+|.-|++-+. + ..|.|+..
T Consensus 18 l~~~~~~Ll~iT~~G~l~vWnl~~~k~~~~~~Si~pll~~~~~~~~~~~~~i~~~~lt~~G~PiV~lsn-g-~~y~y~~~ 95 (219)
T PF07569_consen 18 LECNGSYLLAITSSGLLYVWNLKKGKAVLPPVSIAPLLNSSPVSDKSSSPNITSCSLTSNGVPIVTLSN-G-DSYSYSPD 95 (219)
T ss_pred EEeCCCEEEEEeCCCeEEEEECCCCeeccCCccHHHHhcccccccCCCCCcEEEEEEcCCCCEEEEEeC-C-CEEEeccc
Confidence 4457889999999999999999998765332 12234899999999988888765 4 38999864
No 454
>PF14779 BBS1: Ciliary BBSome complex subunit 1
Probab=91.64 E-value=12 Score=36.85 Aligned_cols=136 Identities=13% Similarity=0.188 Sum_probs=87.8
Q ss_pred CCeEEEEEEc-----CCeEEEEEcCccEEEEecCCCCCCcEEEEEeCC-----eEEEEECCeEEEEECCeeEEEEc----
Q 003579 25 GTENFVTVSV-----GKAFHIYNCAKLNLVLVGPQLPKKIRALASYRD-----YTFAAYGNHIAVVKRAHQVATWS---- 90 (809)
Q Consensus 25 ~~~~~i~~~~-----~~~i~iwd~~~~~~~~~~~~~~~~I~~la~~~~-----~~~~a~g~~i~vw~~~~~~~~~~---- 90 (809)
|...++++.. +..++||.-.++..-...+..|..|.++-.... .+-+|+|+.|++|+.-+....+.
T Consensus 29 Gd~kLvvaD~g~~~~~~kLKVykGt~l~~E~~L~d~P~ai~sFy~d~~ep~~P~iAVA~G~~vyiYkNlkP~yKftlP~~ 108 (257)
T PF14779_consen 29 GDYKLVVADLGTGDQNMKLKVYKGTSLISEITLPDLPSAIVSFYMDEHEPRTPAIAVAAGPSVYIYKNLKPFYKFTLPPL 108 (257)
T ss_pred CeEEEEEEecCCcCCCceEEEEcCCChhhcccccCCCeEEEEEeccCCCCCCCeEEEEeCCEEEEEecccceeeecCCCC
Confidence 4566777775 468999987776655555666666666655432 56778899999997332211100
Q ss_pred -----------------------------------------------------------------cccccEEEEEE----
Q 003579 91 -----------------------------------------------------------------RHSAKVNLLLL---- 101 (809)
Q Consensus 91 -----------------------------------------------------------------~h~~~V~~l~~---- 101 (809)
.+...|+||+-
T Consensus 109 ~~~~~E~eiW~~~~~~~i~~~~l~~~L~~lr~~~~~~LS~rSl~~L~l~~ee~~~fi~~~k~~pl~~~t~ITcm~tikk~ 188 (257)
T PF14779_consen 109 EINPLEQEIWQQLREGKIDPETLKEMLESLRDIAGVKLSPRSLRFLQLDPEEREAFIERYKDSPLKRQTVITCMATIKKS 188 (257)
T ss_pred CCCHHHHHHHHhcccCCCCHHHHHHHHHHHhhccCCccCHHHHHHHCCCHHHHHHHHHHHhcCCcccCceeEEeeeeccc
Confidence 13456888874
Q ss_pred --e---CCEEEEEeCCCcEEEEEcCCCccccceeeeEEcCCccccEEE---EeCCCCCCEEEEEeCCCeEEEE
Q 003579 102 --F---GEHILSIDIDGNMFIWAFKGIEENLAPVGHVKLDDKFTPTCI---MHPDTYLNKVIVGSQEGSLQLW 166 (809)
Q Consensus 102 --~---g~~l~s~~~dg~i~vWd~~~~~~~~~~~~~~~~~~~~~~~~~---~~p~~~~~~l~~~~~dg~i~lw 166 (809)
+ -..|+.|.++|.|.|.|-+.... ..++......+..++ +..-. -+|++++.||.|++.
T Consensus 189 ~~d~~a~scLViGTE~~~i~iLd~~af~i----l~~~~lpsvPv~i~~~G~~devd--yRI~Va~Rdg~iy~i 255 (257)
T PF14779_consen 189 SADEDAVSCLVIGTESGEIYILDPQAFTI----LKQVQLPSVPVFISVSGQYDEVD--YRIVVACRDGKIYTI 255 (257)
T ss_pred ccCCCCcceEEEEecCCeEEEECchhhee----EEEEecCCCceEEEEEeeeeccc--eEEEEEeCCCEEEEE
Confidence 1 35799999999999999887766 555555544332222 22122 378889999988764
No 455
>PF08801 Nucleoporin_N: Nup133 N terminal like; InterPro: IPR014908 Nucleoporins are the main components of the nuclear pore complex (NPC) in eukaryotic cells, and mediate bidirectional nucleocytoplasmic transport, especially of mRNA and proteins. RNA undergoing nuclear export first encounters the basket of the nuclear pore and many nucleoporins are accessible on the basket side of the pore [, ]. This entry represents the N-terminal of Nucleoprotein which forms a seven-bladed beta propeller structure []. ; PDB: 1XKS_A.
Probab=91.35 E-value=11 Score=41.20 Aligned_cols=167 Identities=16% Similarity=0.224 Sum_probs=69.2
Q ss_pred EEEEEeCC--eEEEEECCeEEEEEC-------C--eeEEEE-ccccccEEEEEEeCCEEEEEeCCCcEEEEEcCCCcccc
Q 003579 60 RALASYRD--YTFAAYGNHIAVVKR-------A--HQVATW-SRHSAKVNLLLLFGEHILSIDIDGNMFIWAFKGIEENL 127 (809)
Q Consensus 60 ~~la~~~~--~~~~a~g~~i~vw~~-------~--~~~~~~-~~h~~~V~~l~~~g~~l~s~~~dg~i~vWd~~~~~~~~ 127 (809)
..+.+.+. .-++++++++++|+- . .....+ .++...+.++ ++.....|.|+.|+--+.....
T Consensus 29 ~~~gi~~e~g~Aw~~~d~~l~vW~Y~~~~~s~~~~~~~~~~~~~~~~~i~~v------~lv~p~~G~v~f~~~I~~~l~~ 102 (422)
T PF08801_consen 29 CSMGIFPEIGRAWIVVDNRLYVWNYSSTQSSPNDGSDFPLFDDGSSSSIPGV------GLVKPKTGRVVFWESISHLLVL 102 (422)
T ss_dssp -EEEEE-TTSEEEEEETTEEEEEE--SS--GG--EEEEE-----------SE------EEEE-TT-EEEEES-TT-TT--
T ss_pred eEEEEEcccCEEEEEECCEEEEEeccCCCCCcCcccccceecCCCCCCCceE------EEEEcCCCCEEecccchhhhhc
Confidence 34445554 677788999999985 2 223334 4555555554 4455668999999865444321
Q ss_pred ceeeeE---------EcCCcc-ccEEEEeCCCCCCEEEEEeCCCeEEEEeCCCCceEEEEcCCCCCEEEEEEcCCCCEEE
Q 003579 128 APVGHV---------KLDDKF-TPTCIMHPDTYLNKVIVGSQEGSLQLWNISTKKKLYEFKGWGSSISSCVSSPALDVVA 197 (809)
Q Consensus 128 ~~~~~~---------~~~~~~-~~~~~~~p~~~~~~l~~~~~dg~i~lwd~~~~~~~~~~~~~~~~I~~l~~sp~~~~la 197 (809)
.....+ ...... ....-..|.+ ++++..+|+|.....+....++.+.-. +...
T Consensus 103 ~t~~~i~l~gv~~~~l~~~e~~~~~~~~~~~~----~I~~ts~GRif~~~~~~~~g~~~l~y~----------~~~~--- 165 (422)
T PF08801_consen 103 ATPSQISLLGVSYSELLSGELSTSLTNVEPSG----FIVSTSTGRIFFLGIRDSNGKYELSYQ----------QLSG--- 165 (422)
T ss_dssp EEEE------------------EEEEEEETTT----EEEEETT--EEEEEE-TTS-EEEEE-T----------T------
T ss_pred CccccccccccceeeecCCceEEECCCCceEE----EEEECCCCeEEEEeCCCCCCcEEEEEE----------cCcC---
Confidence 111111 111111 1112244444 677777788877776653344433221 1100
Q ss_pred EEeCCCeEEEEEeeCCeEEEE-E--eccCCCcEEEEEEecCCCCEEEEEcCCCcEEEEECCC
Q 003579 198 VGCSDGKIHVHNVRYDEELVT-F--THSMRGAVTALAFSSDGQPLLASGASSGVISIWNLEK 256 (809)
Q Consensus 198 ~g~~dg~i~iwd~~~~~~~~~-~--~~~~~~~V~~l~fs~dg~~~lasg~~dg~I~iwdl~~ 256 (809)
.....+...+..... + .......|.+++..+..+ ++++.+.+|.|.+|++..
T Consensus 166 ------~~~~i~~~~~~~~~~~~p~~~~~~~~I~~v~~d~~r~-~ly~l~~~~~Iq~w~l~~ 220 (422)
T PF08801_consen 166 ------RCSKINHTSSSIFSSLLPSFSDPRPKIVQVAVDPSRR-LLYTLTSDGSIQVWDLGP 220 (422)
T ss_dssp --------------------------------EEEEEEETTTT-EEEEEESSE-EEEEEE-S
T ss_pred ------CccccccccCceeccccCCcccchhceeeEEecCCcC-EEEEEeCCCcEEEEEEeC
Confidence 000000000000000 0 111133488888888776 999999999999999975
No 456
>PF13449 Phytase-like: Esterase-like activity of phytase
Probab=91.18 E-value=21 Score=37.19 Aligned_cols=161 Identities=15% Similarity=0.150 Sum_probs=93.6
Q ss_pred CCeEEEEEcCCCCEEEEEeCCCc------EEEEECCCC-ceeeeeeCcccc--------cccCccccEEEEEEcCCCCEE
Q 003579 425 TAVKACTISACGNFAVLGTAGGW------IERFNLQSG-ISRGSYLDMSER--------SNYAHNGEVVGVACDSTNTLM 489 (809)
Q Consensus 425 ~~v~~v~~s~~g~~l~~g~~~g~------i~i~~~~~~-~~~~~~~~~~~~--------~~~~h~~~v~~l~~~~~~~~l 489 (809)
+....+.+.+++..+++-+.+|. ++.+++... ............ ....-....-+|++.+++.++
T Consensus 20 GGlSgl~~~~~~~~~~avSD~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~~~G~~~~~~~~D~Egi~~~~~g~~~ 99 (326)
T PF13449_consen 20 GGLSGLDYDPDDGRFYAVSDRGPNKGPPRFYTFRIDYDQGGIGGVTILDMIPLRDPDGQPFPKNGLDPEGIAVPPDGSFW 99 (326)
T ss_pred CcEeeEEEeCCCCEEEEEECCCCCCCCCcEEEEEeeccCCCccceEeccceeccCCCCCcCCcCCCChhHeEEecCCCEE
Confidence 67889999965555566666666 666665541 011111000000 000111245588888888888
Q ss_pred EEEeCc------CeEEEEECCCCceeeee----------------ecCCCeEEEEEeeCCCEEEEEeC-----CC--e--
Q 003579 490 ISAGYH------GDIKVWDFKGRDLKSRW----------------EVGCSLVKIVYHRVNGLLATVAD-----DL--V-- 538 (809)
Q Consensus 490 ~s~~~d------g~i~iwd~~~~~~~~~~----------------~~~~~i~~~~~s~~~~~la~~~~-----d~--~-- 538 (809)
++.-.+ ..|+.++.. |+....+ ......-.++++|+|+.|.++.+ |+ .
T Consensus 100 is~E~~~~~~~~p~I~~~~~~-G~~~~~~~vP~~~~~~~~~~~~~~~N~G~E~la~~~dG~~l~~~~E~~l~~d~~~~~~ 178 (326)
T PF13449_consen 100 ISSEGGRTGGIPPRIRRFDLD-GRVIRRFPVPAAFLPDANGTSGRRNNRGFEGLAVSPDGRTLFAAMESPLKQDGPRANP 178 (326)
T ss_pred EEeCCccCCCCCCEEEEECCC-CcccceEccccccccccCccccccCCCCeEEEEECCCCCEEEEEECccccCCCccccc
Confidence 887777 778888866 5554443 12356788999999996666543 22 1
Q ss_pred -----EEE--EEcCC-CeEEEE----Eec-----CCCCeeeEEECCCCCEEEEE-----eCCCeEEEEEc
Q 003579 539 -----IRL--FDVVA-LRMVRK----FEG-----HTDRITDFCFSEDGKWLLSS-----GMDGSLRIWDV 586 (809)
Q Consensus 539 -----I~v--~d~~~-~~~~~~----~~~-----h~~~I~~l~fspdg~~l~s~-----s~D~~I~vwd~ 586 (809)
+++ ||..+ ++.... +.. ....|+++.+-+++++|+-= .....++|+.+
T Consensus 179 ~~~~~~ri~~~d~~~~~~~~~~~~y~ld~~~~~~~~~~isd~~al~d~~lLvLER~~~~~~~~~~ri~~v 248 (326)
T PF13449_consen 179 DNGSPLRILRYDPKTPGEPVAEYAYPLDPPPTAPGDNGISDIAALPDGRLLVLERDFSPGTGNYKRIYRV 248 (326)
T ss_pred ccCceEEEEEecCCCCCccceEEEEeCCccccccCCCCceeEEEECCCcEEEEEccCCCCccceEEEEEE
Confidence 444 45544 323333 222 35678999999999987732 13445666644
No 457
>PF10433 MMS1_N: Mono-functional DNA-alkylating methyl methanesulfonate N-term; PDB: 2B5M_A 4A0K_C 4A0B_C 3I7L_A 2B5N_C 3I8E_A 4A09_A 4A0A_A 3EI4_C 2B5L_A ....
Probab=91.15 E-value=30 Score=38.79 Aligned_cols=420 Identities=15% Similarity=0.128 Sum_probs=176.1
Q ss_pred EEEEEeCCCeEEEEeCC--CCceEE-------EEcC----CCCCEEEEEEcCCCCEEEEEeCCCeEEEEEeeC-------
Q 003579 153 KVIVGSQEGSLQLWNIS--TKKKLY-------EFKG----WGSSISSCVSSPALDVVAVGCSDGKIHVHNVRY------- 212 (809)
Q Consensus 153 ~l~~~~~dg~i~lwd~~--~~~~~~-------~~~~----~~~~I~~l~~sp~~~~la~g~~dg~i~iwd~~~------- 212 (809)
.|++++.+|.+.+.... +.+.+. .+.. ....-..++..|.++.++++..+|.+.|+-+..
T Consensus 2 ~L~v~tdsg~l~~l~~~~~~~~~~~~~v~~~~~~~~~~~r~~~~G~~l~vDP~~R~i~v~a~e~~~~v~~l~~~~~~~~~ 81 (504)
T PF10433_consen 2 SLVVTTDSGKLSILEYDPSTHGFFKEFVHQWEPLSKSGSRLSQPGQYLAVDPSGRCIAVSAYEGNFLVYPLNRSLDSDIA 81 (504)
T ss_dssp EEEEEETTTEEEEEEEEEETTEE-E-EEEEEEE---SSSEB-TT--EEEE-TTSSEEEEEEBTTEEEEEE-SS----T-T
T ss_pred EEEEEECCCCEEEEEEECCCCccceeeEEEeEecCCCCCChhcCCcEEEECCcCCEEEEEecCCeEEEEEeccccccccc
Confidence 46777777776664333 333211 1111 123456789999999999999999999999987
Q ss_pred C-eEEEEEeccCCCcEEEEEEec---C-CCCEEEEE--cCC--CcEEEEE--CCCcee------eee--eecccccceEE
Q 003579 213 D-EELVTFTHSMRGAVTALAFSS---D-GQPLLASG--ASS--GVISIWN--LEKRRL------QSV--IREAHDNAIIS 273 (809)
Q Consensus 213 ~-~~~~~~~~~~~~~V~~l~fs~---d-g~~~lasg--~~d--g~I~iwd--l~~~~~------~~~--~~~~h~~~V~~ 273 (809)
. ....... ...+.|.+++|.. . ..+.++.- ... ..+..++ ...+.. ... +...+..+ ..
T Consensus 82 ~~~~~~~pi-~s~~~i~~~~FL~~~~~~~~p~la~L~~~~~~~~~~~~y~w~~~~~l~~~~~~~~~~~~l~~~~~~p-~~ 159 (504)
T PF10433_consen 82 FSPHINSPI-KSEGNILDMCFLHPSVGYDNPTLAILYVDSQRRTHLVTYEWSLDDGLNHVISKSTLPIRLPNEDELP-SF 159 (504)
T ss_dssp T---EEEE---S-SEEEEEEEES---S-SS-EEEEEEEETT-EEEEEEEE--------EETTTTEEEE--EEEE-TT-EE
T ss_pred ccccccccc-cCCceEEEEEEEecccCCCCceEEEEEEEecccceeEEEeeecccccceeeeeccccccccccCCCc-cE
Confidence 0 1111111 1257789999986 1 22244432 122 2344444 333211 000 11111222 22
Q ss_pred EEEecC--CCEEEEEcCCCcEEEEEeeCCCCCceeEEecc--C-CCCCCeeEE-------EecCCCEEEEEECCCCEEEE
Q 003579 274 LHFFAN--EPVLMSASADNSIKMWIFDTTDGDPRLLRFRS--G-HSAPPLCIR-------FYANGRHILSAGQDRAFRLF 341 (809)
Q Consensus 274 l~~~~~--~~~l~s~s~d~~i~vw~~~~~~~~~~~~~~~~--~-h~~~v~~i~-------~~~~~~~l~s~~~dg~i~~w 341 (809)
+.-.|. +-.|++ + ++.+.+-+.....+......... . ...-+.+.. ...++..++.+..+|.+...
T Consensus 160 LIPlp~~~ggllV~-~-~~~i~y~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~lL~~e~G~l~~l 237 (504)
T PF10433_consen 160 LIPLPNPPGGLLVG-G-ENIIIYKNHLIGSGDYSFLSIPSPPSSSSSLWTSWARPERNISYDKDGDRILLQDEDGDLYLL 237 (504)
T ss_dssp EEEE-TTT-SEEEE-E-SSEEEEEE------TTEEEEE--H-HHHTS-EEEEEE------SSTTSSEEEEEETTSEEEEE
T ss_pred EEEcCCCCcEEEEE-C-CEEEEEecccccccccccccccCCccCCCceEEEEEeccccceecCCCCEEEEEeCCCeEEEE
Confidence 333333 334443 3 23333322222211112221111 1 112222222 23467789999999999988
Q ss_pred EeeecccceecchhhHHHHHhhccchhhhhccCceeEEeeccccccccceeEEeecCCceEEEEEeeeeeecceeeecCC
Q 003579 342 SVIQDQQSRELSQRHVAKRARKLKMKEEELKLKPVIAFDCAEIRERDWCNVVTCHMDTAQAYVWRLQNFVLGEHILRPCP 421 (809)
Q Consensus 342 d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~ 421 (809)
.+..... .+.... .... .++..++...... ..--.+.+..+++.+.-|.......-...
T Consensus 238 ~l~~~~~--~i~i~~-----------~g~~-~~~~s~l~~l~~g--~d~lf~gs~~gds~l~~~~~~~l~~~~~~----- 296 (504)
T PF10433_consen 238 TLDNDGG--SISITY-----------LGTL-CSIASSLTYLKNG--GDYLFVGSEFGDSQLLQISLSNLEVLDSL----- 296 (504)
T ss_dssp EEEEEEE--EEEEEE-----------EEE---S-ESEEEEESTT----EEEEEESSS-EEEEEEESESEEEEEEE-----
T ss_pred EEEECCC--eEEEEE-----------cCCc-CChhheEEEEcCC--CEEEEEEEecCCcEEEEEeCCCcEEEEec-----
Confidence 8876553 110000 0000 1222222222211 11222333345555555553333322211
Q ss_pred CCCCCeEEEEEcCC---CC-------EEEEEe---CCCcEEEEECCCCceee--eeeCcccccccCccccEEEEEEcC-C
Q 003579 422 ENPTAVKACTISAC---GN-------FAVLGT---AGGWIERFNLQSGISRG--SYLDMSERSNYAHNGEVVGVACDS-T 485 (809)
Q Consensus 422 ~~~~~v~~v~~s~~---g~-------~l~~g~---~~g~i~i~~~~~~~~~~--~~~~~~~~~~~~h~~~v~~l~~~~-~ 485 (809)
.+-+++..+++.+. +. .+++++ .+|.+++..- |.... .... ....+ -..++.+.... +
T Consensus 297 ~N~~Pi~D~~v~~~~~~~~~~~~~~~~lv~~sG~g~~gsL~~lr~--Gi~~~~~~~~~---~~l~~-v~~iW~l~~~~~~ 370 (504)
T PF10433_consen 297 PNWGPIVDFCVVDSSNSGQPSNPSSDQLVACSGAGKRGSLRILRN--GIGIEGLELAS---SELPG-VTGIWTLKLSSSD 370 (504)
T ss_dssp ----SEEEEEEE-TSSSSS-------EEEEEESSGGG-EEEEEEE--SBEEE--EEEE---EEEST-EEEEEEE-SSSSS
T ss_pred cCcCCccceEEeccccCCCCcccccceEEEEECcCCCCcEEEEec--cCCceeeeeec---cCCCC-ceEEEEeeecCCC
Confidence 12377888887532 22 444443 3567776643 22222 1110 00001 23334443322 2
Q ss_pred CCEEEEEeCcCeEEEEECC---CCceeeee-----ecCCCeEEEEEeeCCCEEEEEeCCCeEEEEEcCCCeEEEEEec-C
Q 003579 486 NTLMISAGYHGDIKVWDFK---GRDLKSRW-----EVGCSLVKIVYHRVNGLLATVADDLVIRLFDVVALRMVRKFEG-H 556 (809)
Q Consensus 486 ~~~l~s~~~dg~i~iwd~~---~~~~~~~~-----~~~~~i~~~~~s~~~~~la~~~~d~~I~v~d~~~~~~~~~~~~-h 556 (809)
+.+++.+..+. -+++.+. ..+.+... ....+-..+.... ++.++=... ..|++.+...++....... .
T Consensus 371 ~~~lv~S~~~~-T~vl~~~~~d~~e~~~e~~~~~f~~~~~Tl~~~~~~-~~~ivQVt~-~~i~l~~~~~~~~~~~w~~~~ 447 (504)
T PF10433_consen 371 HSYLVLSFPNE-TRVLQISEGDDGEEVEEVEEDGFDTDEPTLAAGNVG-DGRIVQVTP-KGIRLIDLEDGKLTQEWKPPA 447 (504)
T ss_dssp BSEEEEEESSE-EEEEEES----SSEEEEE---TS-SSS-EEEEEEET-TTEEEEEES-SEEEEEESSSTSEEEEEE-TT
T ss_pred ceEEEEEcCCc-eEEEEEecccCCcchhhhhhccCCCCCCCeEEEEcC-CCeEEEEec-CeEEEEECCCCeEEEEEeCCC
Confidence 45666666544 3455553 23332221 1111111222222 344444433 4588888887777766543 3
Q ss_pred CCCeeeEEECCCCCEEEEEeCCCeEEEEEcCCccEEEEee------eCcceEEEEEcC
Q 003579 557 TDRITDFCFSEDGKWLLSSGMDGSLRIWDVILARQIDAIH------VDVSITALSLSP 608 (809)
Q Consensus 557 ~~~I~~l~fspdg~~l~s~s~D~~I~vwd~~~~~~i~~~~------~~~~v~~l~~sp 608 (809)
...|.+.+... .+++.+-.++.+.++.+.......... ....|.|+..+|
T Consensus 448 ~~~I~~a~~~~--~~v~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~eis~l~i~p 503 (504)
T PF10433_consen 448 GSIIVAASIND--PQVLVALSGGELVYFELDDNKISVSDNDETILELDNEISCLSIEP 503 (504)
T ss_dssp S---SEEEESS--SEEEEEE-TTEEEEEEEETTEEEEEEE----EE-SS-EEEEE---
T ss_pred CCeEEEEEECC--CEEEEEEeCCcEEEEEEECCceeeeeeccccccCCCceEEEEeCC
Confidence 44566666543 466666668889999988766643322 355688888776
No 458
>PF10313 DUF2415: Uncharacterised protein domain (DUF2415); InterPro: IPR019417 This entry represents a short (30 residues) domain of unknown function found in a family of fungal proteins. It contains a characteristic DLL sequence motif.
Probab=91.14 E-value=1 Score=30.10 Aligned_cols=32 Identities=25% Similarity=0.542 Sum_probs=26.9
Q ss_pred CCEEEEEEcCCC---CEEEEEeCCCeEEEEEeeCC
Q 003579 182 SSISSCVSSPAL---DVVAVGCSDGKIHVHNVRYD 213 (809)
Q Consensus 182 ~~I~~l~~sp~~---~~la~g~~dg~i~iwd~~~~ 213 (809)
++|.++.|||.. ++|+.+-..|.|.|+|++++
T Consensus 1 GAvR~~kFsP~~~~~DLL~~~E~~g~vhi~D~R~~ 35 (43)
T PF10313_consen 1 GAVRCCKFSPEPGGNDLLAWAEHQGRVHIVDTRSN 35 (43)
T ss_pred CCeEEEEeCCCCCcccEEEEEccCCeEEEEEcccC
Confidence 468999999854 58888888899999999853
No 459
>COG5167 VID27 Protein involved in vacuole import and degradation [Intracellular trafficking and secretion]
Probab=91.10 E-value=3.2 Score=43.87 Aligned_cols=142 Identities=16% Similarity=0.172 Sum_probs=89.0
Q ss_pred CCCCEEEE-EeCCCcEEEEECCCCceeeeeeCcccccccCccccEEEEEEcCCC--------CEEEEEeCcCeEEEEECC
Q 003579 434 ACGNFAVL-GTAGGWIERFNLQSGISRGSYLDMSERSNYAHNGEVVGVACDSTN--------TLMISAGYHGDIKVWDFK 504 (809)
Q Consensus 434 ~~g~~l~~-g~~~g~i~i~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~--------~~l~s~~~dg~i~iwd~~ 504 (809)
.+.+.++. |.....++-.|+..|+.+.... .|..- -+.+.|.. +.|+--+..+..+| |-+
T Consensus 477 ~dssli~~dg~~~~kLykmDIErGkvveeW~--------~~ddv--vVqy~p~~kf~qmt~eqtlvGlS~~svFrI-DPR 545 (776)
T COG5167 477 NDSSLIYLDGGERDKLYKMDIERGKVVEEWD--------LKDDV--VVQYNPYFKFQQMTDEQTLVGLSDYSVFRI-DPR 545 (776)
T ss_pred CCcceEEecCCCcccceeeecccceeeeEee--------cCCcc--eeecCCchhHHhcCccceEEeecccceEEe-ccc
Confidence 34444433 4455677888888888887775 33332 45566643 34444444333333 322
Q ss_pred -CCceeeeeecCCCeEEEEEe----eCCCEEEEEeCCCeEEEEEcCCCeEEEEEecCCCCeeeEEECCCCCEEEEEeCCC
Q 003579 505 -GRDLKSRWEVGCSLVKIVYH----RVNGLLATVADDLVIRLFDVVALRMVRKFEGHTDRITDFCFSEDGKWLLSSGMDG 579 (809)
Q Consensus 505 -~~~~~~~~~~~~~i~~~~~s----~~~~~la~~~~d~~I~v~d~~~~~~~~~~~~h~~~I~~l~fspdg~~l~s~s~D~ 579 (809)
.|..+...+...-.+.-.|+ ..+.++|+++..|.|++||.-..+....+.+-...|..+..+.+|++|++.+. .
T Consensus 546 ~~gNKi~v~esKdY~tKn~Fss~~tTesGyIa~as~kGDirLyDRig~rAKtalP~lG~aIk~idvta~Gk~ilaTCk-~ 624 (776)
T COG5167 546 ARGNKIKVVESKDYKTKNKFSSGMTTESGYIAAASRKGDIRLYDRIGKRAKTALPGLGDAIKHIDVTANGKHILATCK-N 624 (776)
T ss_pred ccCCceeeeeehhccccccccccccccCceEEEecCCCceeeehhhcchhhhcCcccccceeeeEeecCCcEEEEeec-c
Confidence 33333333322222222222 34679999999999999998766666677888889999999999999887764 4
Q ss_pred eEEEEEcC
Q 003579 580 SLRIWDVI 587 (809)
Q Consensus 580 ~I~vwd~~ 587 (809)
++.+-|++
T Consensus 625 yllL~d~~ 632 (776)
T COG5167 625 YLLLTDVP 632 (776)
T ss_pred eEEEEecc
Confidence 67777765
No 460
>PF07569 Hira: TUP1-like enhancer of split; InterPro: IPR011494 The Hira proteins are found in a range of eukaryotes and are implicated in the assembly of repressive chromatin. These proteins also contain IPR001680 from INTERPRO.; GO: 0006355 regulation of transcription, DNA-dependent, 0005634 nucleus
Probab=91.07 E-value=2.7 Score=40.72 Aligned_cols=79 Identities=10% Similarity=0.121 Sum_probs=53.6
Q ss_pred eeeecCCCeEEEEEeeCCCEEEEEeCCCeEEEEEcCCCeEEEEE-------e-------cCCCCeeeEEECCCCCEEEEE
Q 003579 510 SRWEVGCSLVKIVYHRVNGLLATVADDLVIRLFDVVALRMVRKF-------E-------GHTDRITDFCFSEDGKWLLSS 575 (809)
Q Consensus 510 ~~~~~~~~i~~~~~s~~~~~la~~~~d~~I~v~d~~~~~~~~~~-------~-------~h~~~I~~l~fspdg~~l~s~ 575 (809)
..+..+.++.. +..++.++++.+.+|.+++||+.+++.+..- . .....|..+.++.+|.-|++-
T Consensus 7 P~i~Lgs~~~~--l~~~~~~Ll~iT~~G~l~vWnl~~~k~~~~~~Si~pll~~~~~~~~~~~~~i~~~~lt~~G~PiV~l 84 (219)
T PF07569_consen 7 PPIVLGSPVSF--LECNGSYLLAITSSGLLYVWNLKKGKAVLPPVSIAPLLNSSPVSDKSSSPNITSCSLTSNGVPIVTL 84 (219)
T ss_pred CcEecCCceEE--EEeCCCEEEEEeCCCeEEEEECCCCeeccCCccHHHHhcccccccCCCCCcEEEEEEcCCCCEEEEE
Confidence 34445555555 4456889999999999999999998765432 1 244567777777777766665
Q ss_pred eCCCeEEEEEcCCccE
Q 003579 576 GMDGSLRIWDVILARQ 591 (809)
Q Consensus 576 s~D~~I~vwd~~~~~~ 591 (809)
+ +|..+.|+..-+..
T Consensus 85 s-ng~~y~y~~~L~~W 99 (219)
T PF07569_consen 85 S-NGDSYSYSPDLGCW 99 (219)
T ss_pred e-CCCEEEecccccee
Confidence 5 46677777654433
No 461
>KOG2247 consensus WD40 repeat-containing protein [General function prediction only]
Probab=90.91 E-value=0.039 Score=57.28 Aligned_cols=139 Identities=16% Similarity=0.168 Sum_probs=94.4
Q ss_pred cEEEEeCCCCCCEEEEEeCCCeEEEEeCCCCceEEEEcCCCCCEEEEEEcCCCCEEEEE-eCCCeEEEEEeeCCeEEEEE
Q 003579 141 PTCIMHPDTYLNKVIVGSQEGSLQLWNISTKKKLYEFKGWGSSISSCVSSPALDVVAVG-CSDGKIHVHNVRYDEELVTF 219 (809)
Q Consensus 141 ~~~~~~p~~~~~~l~~~~~dg~i~lwd~~~~~~~~~~~~~~~~I~~l~~sp~~~~la~g-~~dg~i~iwd~~~~~~~~~~ 219 (809)
....+-|.+ ..+++++.+..+..|| +.++....... ++....++|..+++.+++. -..+.+.+||+.+... .++
T Consensus 38 i~~~w~~e~--~nlavaca~tiv~~YD-~agq~~le~n~-tg~aldm~wDkegdvlavlAek~~piylwd~n~eyt-qqL 112 (615)
T KOG2247|consen 38 IIHRWRPEG--HNLAVACANTIVIYYD-KAGQVILELNP-TGKALDMAWDKEGDVLAVLAEKTGPIYLWDVNSEYT-QQL 112 (615)
T ss_pred ceeeEecCC--CceehhhhhhHHHhhh-hhcceecccCC-chhHhhhhhccccchhhhhhhcCCCeeechhhhhhH-HHH
Confidence 344566766 4488888888888998 45555555443 4556678888888877654 4568999999975432 112
Q ss_pred eccCCCcEEEEEEecCCCCEEEEEcCCCcEEEEECCCceeeeeeecccccceEEEEEecCCCEEEEEc
Q 003579 220 THSMRGAVTALAFSSDGQPLLASGASSGVISIWNLEKRRLQSVIREAHDNAIISLHFFANEPVLMSAS 287 (809)
Q Consensus 220 ~~~~~~~V~~l~fs~dg~~~lasg~~dg~I~iwdl~~~~~~~~~~~~h~~~V~~l~~~~~~~~l~s~s 287 (809)
..+....-.-+.|++.+. .++.|...|.+.|++..+.+.....- .|...++++++.+.+. .+.++
T Consensus 113 E~gg~~s~sll~wsKg~~-el~ig~~~gn~viynhgtsR~iiv~G-kh~RRgtq~av~lEd~-vil~d 177 (615)
T KOG2247|consen 113 ESGGTSSKSLLAWSKGTP-ELVIGNNAGNIVIYNHGTSRRIIVMG-KHQRRGTQIAVTLEDY-VILCD 177 (615)
T ss_pred hccCcchHHHHhhccCCc-cccccccccceEEEeccchhhhhhhc-ccccceeEEEecccce-eeecC
Confidence 211122222377888777 78888899999999987776655543 4899999999988763 33333
No 462
>COG4590 ABC-type uncharacterized transport system, permease component [General function prediction only]
Probab=90.90 E-value=1.4 Score=45.58 Aligned_cols=163 Identities=14% Similarity=0.059 Sum_probs=100.3
Q ss_pred CccccEEEEEEcCCCCEEEEEeCcCeEEEEECCCCceeeee--ec--C---CCeE-EEEEeeCCCEEEEEeCCCeEEEE-
Q 003579 472 AHNGEVVGVACDSTNTLMISAGYHGDIKVWDFKGRDLKSRW--EV--G---CSLV-KIVYHRVNGLLATVADDLVIRLF- 542 (809)
Q Consensus 472 ~h~~~v~~l~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~--~~--~---~~i~-~~~~s~~~~~la~~~~d~~I~v~- 542 (809)
.....|..+-..|+++.+..-+. ..+.++++.+..+.... +. + ..++ ++..-..|..+.+++.||.|.-|
T Consensus 218 ~~~~~v~qllL~Pdg~~LYv~~g-~~~~v~~L~~r~l~~rkl~~dspg~~~~~Vte~l~lL~Gg~SLLv~~~dG~vsQWF 296 (733)
T COG4590 218 VPFSDVSQLLLTPDGKTLYVRTG-SELVVALLDKRSLQIRKLVDDSPGDSRHQVTEQLYLLSGGFSLLVVHEDGLVSQWF 296 (733)
T ss_pred CCccchHhhEECCCCCEEEEecC-CeEEEEeecccccchhhhhhcCCCchHHHHHHHHHHHhCceeEEEEcCCCceeeee
Confidence 34566788889999998887666 77888988765443221 11 0 1111 11122345677888889888776
Q ss_pred EcCCC-----eEEEEEecCCCCeeeEEECCCCCEEEEEeCCCeEEEEEcCCccEEEEeeeCcceEEEEEcCCCCeEEEEE
Q 003579 543 DVVAL-----RMVRKFEGHTDRITDFCFSEDGKWLLSSGMDGSLRIWDVILARQIDAIHVDVSITALSLSPNMDVLATAH 617 (809)
Q Consensus 543 d~~~~-----~~~~~~~~h~~~I~~l~fspdg~~l~s~s~D~~I~vwd~~~~~~i~~~~~~~~v~~l~~spdg~~lat~~ 617 (809)
|...+ ..++.++-...++..+.--.+-+-+++-+..|++.++.....+.+-.-+.-..+.-+++||.+.+|++-.
T Consensus 297 dvr~~~~p~l~h~R~f~l~pa~~~~l~pe~~rkgF~~l~~~G~L~~f~st~~~~lL~~~~~~~~~~~~~Sp~~~~Ll~e~ 376 (733)
T COG4590 297 DVRRDGQPHLNHIRNFKLAPAEVQFLLPETNRKGFYSLYRNGTLQSFYSTSEKLLLFERAYQAPQLVAMSPNQAYLLSED 376 (733)
T ss_pred eeecCCCCcceeeeccccCcccceeeccccccceEEEEcCCCceeeeecccCcceehhhhhcCcceeeeCcccchheeec
Confidence 54432 1233333222334333333334556677788888888766555554434444678899999999998865
Q ss_pred eCCCeEEEeecCcccCCCCC
Q 003579 618 VDQNGVYLWVNRCMFSGDSN 637 (809)
Q Consensus 618 ~d~~~i~lW~~~~~~~~~~~ 637 (809)
.. .|+++.+...+-.++.
T Consensus 377 ~g--ki~~~~l~Nr~Peisw 394 (733)
T COG4590 377 QG--KIRLAQLENRNPEISW 394 (733)
T ss_pred CC--ceEEEEecCCCCCccH
Confidence 44 4999988776665553
No 463
>KOG2247 consensus WD40 repeat-containing protein [General function prediction only]
Probab=90.87 E-value=0.026 Score=58.50 Aligned_cols=146 Identities=14% Similarity=0.222 Sum_probs=101.6
Q ss_pred EEEEEcCCCCEEEEEeCCCeEEEEEeeCCeEEEEEeccCCCcEEEEEEecCCCCEEEEEcCCCcEEEEECCCceeeeeee
Q 003579 185 SSCVSSPALDVVAVGCSDGKIHVHNVRYDEELVTFTHSMRGAVTALAFSSDGQPLLASGASSGVISIWNLEKRRLQSVIR 264 (809)
Q Consensus 185 ~~l~~sp~~~~la~g~~dg~i~iwd~~~~~~~~~~~~~~~~~V~~l~fs~dg~~~lasg~~dg~I~iwdl~~~~~~~~~~ 264 (809)
....|.|.+.-+++++.+..+..||-. ++....... .+....++|..+|.-.++.+-..+.+.+||+.+......-.
T Consensus 38 i~~~w~~e~~nlavaca~tiv~~YD~a-gq~~le~n~--tg~aldm~wDkegdvlavlAek~~piylwd~n~eytqqLE~ 114 (615)
T KOG2247|consen 38 IIHRWRPEGHNLAVACANTIVIYYDKA-GQVILELNP--TGKALDMAWDKEGDVLAVLAEKTGPIYLWDVNSEYTQQLES 114 (615)
T ss_pred ceeeEecCCCceehhhhhhHHHhhhhh-cceecccCC--chhHhhhhhccccchhhhhhhcCCCeeechhhhhhHHHHhc
Confidence 345677777779999999999999843 555444443 56778899998888566666788999999997663322211
Q ss_pred cccccceEEEEEecCCCEEEEEcCCCcEEEEEeeCCCCCceeEEeccCCCCCCeeEEEecCCCEEEEEECCCCEE
Q 003579 265 EAHDNAIISLHFFANEPVLMSASADNSIKMWIFDTTDGDPRLLRFRSGHSAPPLCIRFYANGRHILSAGQDRAFR 339 (809)
Q Consensus 265 ~~h~~~V~~l~~~~~~~~l~s~s~d~~i~vw~~~~~~~~~~~~~~~~~h~~~v~~i~~~~~~~~l~s~~~dg~i~ 339 (809)
+-...-.-+.|++..+.++.+...+.+.+++.... |.......|...++++++.+.+ +.+.++.|..+.
T Consensus 115 -gg~~s~sll~wsKg~~el~ig~~~gn~viynhgts----R~iiv~Gkh~RRgtq~av~lEd-~vil~dcd~~L~ 183 (615)
T KOG2247|consen 115 -GGTSSKSLLAWSKGTPELVIGNNAGNIVIYNHGTS----RRIIVMGKHQRRGTQIAVTLED-YVILCDCDNTLS 183 (615)
T ss_pred -cCcchHHHHhhccCCccccccccccceEEEeccch----hhhhhhcccccceeEEEecccc-eeeecCcHHHHH
Confidence 22222223789999999999988999999965544 3333333499999999999877 455555555443
No 464
>PHA02790 Kelch-like protein; Provisional
Probab=90.73 E-value=12 Score=41.51 Aligned_cols=93 Identities=13% Similarity=0.048 Sum_probs=41.8
Q ss_pred EEEEEcCCC-----cEEEEECCCceeeeeeecccccceEEEEEecCCCEEEEEcCCC--cEEEEEeeCCCCCceeEEecc
Q 003579 239 LLASGASSG-----VISIWNLEKRRLQSVIREAHDNAIISLHFFANEPVLMSASADN--SIKMWIFDTTDGDPRLLRFRS 311 (809)
Q Consensus 239 ~lasg~~dg-----~I~iwdl~~~~~~~~~~~~h~~~V~~l~~~~~~~~l~s~s~d~--~i~vw~~~~~~~~~~~~~~~~ 311 (809)
++++|+.++ .+..||..+++-...-.......-.+++ .-++.+.+.||.++ ++..|+ .....+..+..+.
T Consensus 274 lyviGG~~~~~~~~~v~~Ydp~~~~W~~~~~m~~~r~~~~~v-~~~~~iYviGG~~~~~sve~yd--p~~n~W~~~~~l~ 350 (480)
T PHA02790 274 VYLIGGWMNNEIHNNAIAVNYISNNWIPIPPMNSPRLYASGV-PANNKLYVVGGLPNPTSVERWF--HGDAAWVNMPSLL 350 (480)
T ss_pred EEEEcCCCCCCcCCeEEEEECCCCEEEECCCCCchhhcceEE-EECCEEEEECCcCCCCceEEEE--CCCCeEEECCCCC
Confidence 667777542 5777888776433222111111111222 23666777777543 455554 3333333322221
Q ss_pred CCCCCCeeEEEecCCCEEEEEECCC
Q 003579 312 GHSAPPLCIRFYANGRHILSAGQDR 336 (809)
Q Consensus 312 ~h~~~v~~i~~~~~~~~l~s~~~dg 336 (809)
...... +++ .-+|+..+.||.++
T Consensus 351 ~~r~~~-~~~-~~~g~IYviGG~~~ 373 (480)
T PHA02790 351 KPRCNP-AVA-SINNVIYVIGGHSE 373 (480)
T ss_pred CCCccc-EEE-EECCEEEEecCcCC
Confidence 111111 111 22566666776543
No 465
>KOG3616 consensus Selective LIM binding factor [Transcription]
Probab=90.51 E-value=9.2 Score=42.47 Aligned_cols=80 Identities=10% Similarity=0.087 Sum_probs=50.9
Q ss_pred CccccEEEEEEcCCCCEEEEEeCcCeEEEEECCCCceeeeeecCCCeEEEEEeeCCCEEEEEeCCCeEEEEEcCCCeEEE
Q 003579 472 AHNGEVVGVACDSTNTLMISAGYHGDIKVWDFKGRDLKSRWEVGCSLVKIVYHRVNGLLATVADDLVIRLFDVVALRMVR 551 (809)
Q Consensus 472 ~h~~~v~~l~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~i~~~~~s~~~~~la~~~~d~~I~v~d~~~~~~~~ 551 (809)
.|.+.|--+..+..+..++--...-.+.++|+.+.+....+ .-.+-+.|-|.+..+++-+.|.-...|+++-.+.+.
T Consensus 335 nh~~~vdwielne~~~kllfrdkk~kl~l~di~s~qksmil---nfcsymqwvp~sdvivaqn~dnl~iwyn~d~peqvt 411 (1636)
T KOG3616|consen 335 NHEGAVDWIELNERAHKLLFRDKKLKLHLVDIESCQKSMIL---NFCSYMQWVPGSDVIVAQNGDNLCIWYNIDAPEQVT 411 (1636)
T ss_pred cccccccceeccchhhhhhcccccceeEEEEcccchHHHHH---HHhhhheeccCcceEEecCCCceEEEecCCcchhhe
Confidence 78888888888777766766666667888888765432222 123446788877777766666544444666555544
Q ss_pred EEe
Q 003579 552 KFE 554 (809)
Q Consensus 552 ~~~ 554 (809)
.+.
T Consensus 412 ~~k 414 (1636)
T KOG3616|consen 412 MFK 414 (1636)
T ss_pred eeE
Confidence 443
No 466
>PF14761 HPS3_N: Hermansky-Pudlak syndrome 3
Probab=90.41 E-value=16 Score=34.61 Aligned_cols=144 Identities=15% Similarity=0.230 Sum_probs=85.5
Q ss_pred EEEEEcCCCCEEEEEeCcCeEEEEECC--CCceeeeeecCCCeEEEEEeeCCCEEEEEeCC---C---eEEEE---EcC-
Q 003579 478 VGVACDSTNTLMISAGYHGDIKVWDFK--GRDLKSRWEVGCSLVKIVYHRVNGLLATVADD---L---VIRLF---DVV- 545 (809)
Q Consensus 478 ~~l~~~~~~~~l~s~~~dg~i~iwd~~--~~~~~~~~~~~~~i~~~~~s~~~~~la~~~~d---~---~I~v~---d~~- 545 (809)
..++..+. +.|..+...+.|.+|++. ..+++.++..-+.+..+.++..|++|++--.+ . .+|+| ...
T Consensus 21 ~~~c~~g~-d~Lfva~~g~~Vev~~l~~~~~~~~~~F~Tv~~V~~l~y~~~GDYlvTlE~k~~~~~~~fvR~Y~NWr~~~ 99 (215)
T PF14761_consen 21 TAVCCGGP-DALFVAASGCKVEVYDLEQEECPLLCTFSTVGRVLQLVYSEAGDYLVTLEEKNKRSPVDFVRAYFNWRSQK 99 (215)
T ss_pred ceeeccCC-ceEEEEcCCCEEEEEEcccCCCceeEEEcchhheeEEEeccccceEEEEEeecCCccceEEEEEEEhhhhc
Confidence 34444432 344444666789999988 45667777777999999999999999987432 2 56665 221
Q ss_pred -CCeEEE-EEecC---------------------CCCeeeEEECC-CCCEEEEEeCCCeEEEEEcCCccE-EE---Eee-
Q 003579 546 -ALRMVR-KFEGH---------------------TDRITDFCFSE-DGKWLLSSGMDGSLRIWDVILARQ-ID---AIH- 596 (809)
Q Consensus 546 -~~~~~~-~~~~h---------------------~~~I~~l~fsp-dg~~l~s~s~D~~I~vwd~~~~~~-i~---~~~- 596 (809)
....++ ++-|| ..++.+++-.| .|+.|+ |+ ++.+.+|.+..... .. .+.
T Consensus 100 ~~~~~v~vRiaG~~v~~~~~~~~~~qleiiElPl~~~p~ciaCC~~tG~LlV-g~-~~~l~lf~l~~~~~~~~~~~~lDF 177 (215)
T PF14761_consen 100 EENSPVRVRIAGHRVTPSFNESSKDQLEIIELPLSEPPLCIACCPVTGNLLV-GC-GNKLVLFTLKYQTIQSEKFSFLDF 177 (215)
T ss_pred ccCCcEEEEEcccccccCCCCccccceEEEEecCCCCCCEEEecCCCCCEEE-Ec-CCEEEEEEEEEEEEecccccEEec
Confidence 112222 23332 22456666666 455444 54 56789998765433 11 111
Q ss_pred ------eCcc--eEEEEEcCCCCeEEEEEeCCCeEEEeec
Q 003579 597 ------VDVS--ITALSLSPNMDVLATAHVDQNGVYLWVN 628 (809)
Q Consensus 597 ------~~~~--v~~l~~spdg~~lat~~~d~~~i~lW~~ 628 (809)
++.. +..+++. +.|+|..+... +++..+
T Consensus 178 e~~l~~~~~~~~p~~v~ic--~~yiA~~s~~e--v~Vlkl 213 (215)
T PF14761_consen 178 ERSLIDHIDNFKPTQVAIC--EGYIAVMSDLE--VLVLKL 213 (215)
T ss_pred hhhhhheecCceEEEEEEE--eeEEEEecCCE--EEEEEE
Confidence 1222 5566663 66888887765 666543
No 467
>COG4257 Vgb Streptogramin lyase [Defense mechanisms]
Probab=90.29 E-value=19 Score=35.26 Aligned_cols=261 Identities=11% Similarity=0.041 Sum_probs=152.7
Q ss_pred CCcEEEEEEecCCCCEEEEEcCCCcEEEEECCCceeeeeeecccccceEEEEEecCCCEEEEEcCCCcEEEEEeeCCCCC
Q 003579 224 RGAVTALAFSSDGQPLLASGASSGVISIWNLEKRRLQSVIREAHDNAIISLHFFANEPVLMSASADNSIKMWIFDTTDGD 303 (809)
Q Consensus 224 ~~~V~~l~fs~dg~~~lasg~~dg~I~iwdl~~~~~~~~~~~~h~~~V~~l~~~~~~~~l~s~s~d~~i~vw~~~~~~~~ 303 (809)
...-..++-.+||. +-.++...|.|--.|..+|+....-. +....-..+..-|||..-++-+.. -|-.++..+..
T Consensus 61 G~ap~dvapapdG~-VWft~qg~gaiGhLdP~tGev~~ypL-g~Ga~Phgiv~gpdg~~Witd~~~---aI~R~dpkt~e 135 (353)
T COG4257 61 GSAPFDVAPAPDGA-VWFTAQGTGAIGHLDPATGEVETYPL-GSGASPHGIVVGPDGSAWITDTGL---AIGRLDPKTLE 135 (353)
T ss_pred CCCccccccCCCCc-eEEecCccccceecCCCCCceEEEec-CCCCCCceEEECCCCCeeEecCcc---eeEEecCcccc
Confidence 34567788889998 77788888888888998888766554 556666777778888766654332 23333443322
Q ss_pred ceeEEe-ccCCCCCCeeEEEecCCCEEEEEECCCCEEEEEeeecccceecchhhHHHHHhhccchhhhhccCceeEEeec
Q 003579 304 PRLLRF-RSGHSAPPLCIRFYANGRHILSAGQDRAFRLFSVIQDQQSRELSQRHVAKRARKLKMKEEELKLKPVIAFDCA 382 (809)
Q Consensus 304 ~~~~~~-~~~h~~~v~~i~~~~~~~~l~s~~~dg~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~ 382 (809)
...... ...-........|.+.|+.-+++.. |.---.|.
T Consensus 136 vt~f~lp~~~a~~nlet~vfD~~G~lWFt~q~-G~yGrLdP--------------------------------------- 175 (353)
T COG4257 136 VTRFPLPLEHADANLETAVFDPWGNLWFTGQI-GAYGRLDP--------------------------------------- 175 (353)
T ss_pred eEEeecccccCCCcccceeeCCCccEEEeecc-ccceecCc---------------------------------------
Confidence 111111 1122345667778888876666541 11000000
Q ss_pred cccccccceeEEeecCCceEEEEEeeeeeecceeeecCCCCCCCeEEEEEcCCCCEEEEEeCCCcEEEEECCCCceeeee
Q 003579 383 EIRERDWCNVVTCHMDTAQAYVWRLQNFVLGEHILRPCPENPTAVKACTISACGNFAVLGTAGGWIERFNLQSGISRGSY 462 (809)
Q Consensus 383 ~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~v~~v~~s~~g~~l~~g~~~g~i~i~~~~~~~~~~~~ 462 (809)
..+.+++|+... ......++..|+|..-++...+..|...|..++.. ..+
T Consensus 176 ---------------a~~~i~vfpaPq--------------G~gpyGi~atpdGsvwyaslagnaiaridp~~~~a-ev~ 225 (353)
T COG4257 176 ---------------ARNVISVFPAPQ--------------GGGPYGICATPDGSVWYASLAGNAIARIDPFAGHA-EVV 225 (353)
T ss_pred ---------------ccCceeeeccCC--------------CCCCcceEECCCCcEEEEeccccceEEcccccCCc-cee
Confidence 112233333221 15567889999999999988888898888887733 222
Q ss_pred eCcccccccCccccEEEEEEcCCCCEEEEEeCcCeEEEEECCCCceeeeeecC---CCeEEEEEeeCCCEEEEEeCCCeE
Q 003579 463 LDMSERSNYAHNGEVVGVACDSTNTLMISAGYHGDIKVWDFKGRDLKSRWEVG---CSLVKIVYHRVNGLLATVADDLVI 539 (809)
Q Consensus 463 ~~~~~~~~~~h~~~v~~l~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~---~~i~~~~~s~~~~~la~~~~d~~I 539 (809)
... ......-..+-.+|.++.-++....+.+..+|-.... -..+... ....++.....++.-.+-...+.|
T Consensus 226 p~P-----~~~~~gsRriwsdpig~~wittwg~g~l~rfdPs~~s-W~eypLPgs~arpys~rVD~~grVW~sea~agai 299 (353)
T COG4257 226 PQP-----NALKAGSRRIWSDPIGRAWITTWGTGSLHRFDPSVTS-WIEYPLPGSKARPYSMRVDRHGRVWLSEADAGAI 299 (353)
T ss_pred cCC-----CcccccccccccCccCcEEEeccCCceeeEeCccccc-ceeeeCCCCCCCcceeeeccCCcEEeeccccCce
Confidence 211 1223445667778889888888778888888765443 2233322 345556666556655555556667
Q ss_pred EEEEcCCCeEEEEEecCCCCeeeEEEC
Q 003579 540 RLFDVVALRMVRKFEGHTDRITDFCFS 566 (809)
Q Consensus 540 ~v~d~~~~~~~~~~~~h~~~I~~l~fs 566 (809)
.-+|-++.+ ...+.........+.+.
T Consensus 300 ~rfdpeta~-ftv~p~pr~n~gn~ql~ 325 (353)
T COG4257 300 GRFDPETAR-FTVLPIPRPNSGNIQLD 325 (353)
T ss_pred eecCcccce-EEEecCCCCCCCceecc
Confidence 777766543 33444433333344443
No 468
>COG3823 Glutamine cyclotransferase [Posttranslational modification, protein turnover, chaperones]
Probab=90.21 E-value=16 Score=34.21 Aligned_cols=172 Identities=9% Similarity=0.057 Sum_probs=88.0
Q ss_pred EEcCCeEEEEEEc--CCeEEEEEcCccEEEEecCCCCCCcE--EEEEeCCeEEEEE-C-CeEEEEECCe--eEEEEcccc
Q 003579 22 QRLGTENFVTVSV--GKAFHIYNCAKLNLVLVGPQLPKKIR--ALASYRDYTFAAY-G-NHIAVVKRAH--QVATWSRHS 93 (809)
Q Consensus 22 ~~~~~~~~i~~~~--~~~i~iwd~~~~~~~~~~~~~~~~I~--~la~~~~~~~~a~-g-~~i~vw~~~~--~~~~~~~h~ 93 (809)
.+.++..+.+++. ...|++||+.+++..+..+-.+..+- .+.-..|..|.-+ . +.-.++|... ++.++ .-.
T Consensus 52 ~~~~g~i~esTG~yg~S~ir~~~L~~gq~~~s~~l~~~~~FgEGit~~gd~~y~LTw~egvaf~~d~~t~~~lg~~-~y~ 130 (262)
T COG3823 52 EYLDGHILESTGLYGFSKIRVSDLTTGQEIFSEKLAPDTVFGEGITKLGDYFYQLTWKEGVAFKYDADTLEELGRF-SYE 130 (262)
T ss_pred eeeCCEEEEeccccccceeEEEeccCceEEEEeecCCccccccceeeccceEEEEEeccceeEEEChHHhhhhccc-ccC
Confidence 3456777777765 34599999999988876643222221 1233344444333 1 1234444332 22221 123
Q ss_pred ccEEEEEEeCCEEEEEeCCCcEEEEEcCCCccccceeeeEEcCCccccEEEEeC----CCCCCEEEEEeCCCeEEEEeCC
Q 003579 94 AKVNLLLLFGEHILSIDIDGNMFIWAFKGIEENLAPVGHVKLDDKFTPTCIMHP----DTYLNKVIVGSQEGSLQLWNIS 169 (809)
Q Consensus 94 ~~V~~l~~~g~~l~s~~~dg~i~vWd~~~~~~~~~~~~~~~~~~~~~~~~~~~p----~~~~~~l~~~~~dg~i~lwd~~ 169 (809)
+.=..++-+++.|+..+...++..-|.++... ..++...........++. ++ ...+-.-.+..|...+..
T Consensus 131 GeGWgLt~d~~~LimsdGsatL~frdP~tfa~----~~~v~VT~~g~pv~~LNELE~VdG--~lyANVw~t~~I~rI~p~ 204 (262)
T COG3823 131 GEGWGLTSDDKNLIMSDGSATLQFRDPKTFAE----LDTVQVTDDGVPVSKLNELEWVDG--ELYANVWQTTRIARIDPD 204 (262)
T ss_pred CcceeeecCCcceEeeCCceEEEecCHHHhhh----cceEEEEECCeecccccceeeecc--EEEEeeeeecceEEEcCC
Confidence 34466777888888887666677777766555 222222111111111110 11 011111223345555666
Q ss_pred CCceEEEE------------cCCCCCEEEEEEcCCCCEEEEEe
Q 003579 170 TKKKLYEF------------KGWGSSISSCVSSPALDVVAVGC 200 (809)
Q Consensus 170 ~~~~~~~~------------~~~~~~I~~l~~sp~~~~la~g~ 200 (809)
+|+.+..+ ..|..-...+++.|+++.+...+
T Consensus 205 sGrV~~widlS~L~~~~~~~~~~~nvlNGIA~~~~~~r~~iTG 247 (262)
T COG3823 205 SGRVVAWIDLSGLLKELNLDKSNDNVLNGIAHDPQQDRFLITG 247 (262)
T ss_pred CCcEEEEEEccCCchhcCccccccccccceeecCcCCeEEEec
Confidence 66665443 23455677889999886555544
No 469
>PF14761 HPS3_N: Hermansky-Pudlak syndrome 3
Probab=89.86 E-value=12 Score=35.48 Aligned_cols=103 Identities=14% Similarity=0.228 Sum_probs=66.0
Q ss_pred CEEEEEeCCCeEEEEEcC--CCeEEEEEecCCCCeeeEEECCCCCEEEEEeC---CC---eEEEE---EcC--Ccc----
Q 003579 528 GLLATVADDLVIRLFDVV--ALRMVRKFEGHTDRITDFCFSEDGKWLLSSGM---DG---SLRIW---DVI--LAR---- 590 (809)
Q Consensus 528 ~~la~~~~d~~I~v~d~~--~~~~~~~~~~h~~~I~~l~fspdg~~l~s~s~---D~---~I~vw---d~~--~~~---- 590 (809)
+.|.++.....|.+|++. ..+.+.+|.. -+.|..+.++..|.||+|-=. .. .+|+| +.. ...
T Consensus 29 d~Lfva~~g~~Vev~~l~~~~~~~~~~F~T-v~~V~~l~y~~~GDYlvTlE~k~~~~~~~fvR~Y~NWr~~~~~~~~v~v 107 (215)
T PF14761_consen 29 DALFVAASGCKVEVYDLEQEECPLLCTFST-VGRVLQLVYSEAGDYLVTLEEKNKRSPVDFVRAYFNWRSQKEENSPVRV 107 (215)
T ss_pred ceEEEEcCCCEEEEEEcccCCCceeEEEcc-hhheeEEEeccccceEEEEEeecCCccceEEEEEEEhhhhcccCCcEEE
Confidence 455555677889999988 3456667764 488999999999999998532 22 67775 222 111
Q ss_pred -----------------EEEE--eeeCcceEEEEEcCCCCeEEEEEeCCCeEEEeecCcccC
Q 003579 591 -----------------QIDA--IHVDVSITALSLSPNMDVLATAHVDQNGVYLWVNRCMFS 633 (809)
Q Consensus 591 -----------------~i~~--~~~~~~v~~l~~spdg~~lat~~~d~~~i~lW~~~~~~~ 633 (809)
.+.. +....++.+++-.|-..-|+.|+.+ .+.||..+....
T Consensus 108 RiaG~~v~~~~~~~~~~qleiiElPl~~~p~ciaCC~~tG~LlVg~~~--~l~lf~l~~~~~ 167 (215)
T PF14761_consen 108 RIAGHRVTPSFNESSKDQLEIIELPLSEPPLCIACCPVTGNLLVGCGN--KLVLFTLKYQTI 167 (215)
T ss_pred EEcccccccCCCCccccceEEEEecCCCCCCEEEecCCCCCEEEEcCC--EEEEEEEEEEEE
Confidence 1111 2223457888888844445555555 499999875554
No 470
>TIGR02276 beta_rpt_yvtn 40-residue YVTN family beta-propeller repeat. This repeat of about 40 amino acids is found in up to 14 copies per protein. Archaea Methanosarcina mazei and Methanosarcina acetivorans each have over 10 genes that encode tandem copies of this repeat, which is also found in other species. PSIPRED predicts with high confidence that each 40-residue repeats contains four beta strands. This model overlaps somewhat with the NHL repeat (Pfam pfam01436) and also shows sequence similarity to the WD domain, G-beta repeat (Pfam pfam00400).
Probab=89.59 E-value=1.7 Score=28.97 Aligned_cols=41 Identities=20% Similarity=0.211 Sum_probs=31.7
Q ss_pred CCCCEEEEEe-CCCeEEEEEcCCccEEEEeeeCcceEEEEEc
Q 003579 567 EDGKWLLSSG-MDGSLRIWDVILARQIDAIHVDVSITALSLS 607 (809)
Q Consensus 567 pdg~~l~s~s-~D~~I~vwd~~~~~~i~~~~~~~~v~~l~~s 607 (809)
|++++|.++. .+++|.++|..+++.+..+........++|+
T Consensus 1 pd~~~lyv~~~~~~~v~~id~~~~~~~~~i~vg~~P~~i~~~ 42 (42)
T TIGR02276 1 PDGTKLYVTNSGSNTVSVIDTATNKVIATIPVGGYPFGVAVS 42 (42)
T ss_pred CCCCEEEEEeCCCCEEEEEECCCCeEEEEEECCCCCceEEeC
Confidence 6788776655 5789999999999999888876556666654
No 471
>PF10395 Utp8: Utp8 family; InterPro: IPR018843 Utp8 is an essential component of the nuclear tRNA export machinery in Saccharomyces cerevisiae (Baker's yeast). It is a tRNA binding protein that acts at a step between tRNA maturation /aminoacylation, and translocation of the tRNA across the nuclear pore complex [].
Probab=89.45 E-value=42 Score=37.92 Aligned_cols=151 Identities=17% Similarity=0.250 Sum_probs=84.6
Q ss_pred ccccEEEEEEcCCCCEEEEEeCcCeEEEEECCCCceee--eeecCCCeEEE---EEee------CCCEEEEEeC-C---C
Q 003579 473 HNGEVVGVACDSTNTLMISAGYHGDIKVWDFKGRDLKS--RWEVGCSLVKI---VYHR------VNGLLATVAD-D---L 537 (809)
Q Consensus 473 h~~~v~~l~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~--~~~~~~~i~~~---~~s~------~~~~la~~~~-d---~ 537 (809)
-...|.++.+.++++.+++.-.+|.|.+||+..+.... .+...... .+ .|-+ ...++++.+. + -
T Consensus 128 l~~kvv~Ik~~~~~~~I~vvl~nG~i~~~d~~~~~l~~~~~l~~~~~~-~v~ys~fv~~~~~~~~~~~ll~v~~~~~~k~ 206 (670)
T PF10395_consen 128 LDDKVVGIKFSSDGKIIYVVLENGSIQIYDFSENSLEKVPQLKLKSSI-NVSYSKFVNDFELENGKDLLLTVSQLSNSKL 206 (670)
T ss_pred cccceEEEEEecCCCEEEEEEcCCcEEEEecccccccccccccccccc-ceehhhhhcccccccCCceEEEEEEcCCCcE
Confidence 35788999999999999999999999999994332222 22111111 11 1211 1334444443 2 3
Q ss_pred eEEEEEc-CCCeEEEEEe---cCCCCeeeEEECC-CCCEEEEEeCCCeEEEEEcCCccEEEEeeeCc-------ceEEEE
Q 003579 538 VIRLFDV-VALRMVRKFE---GHTDRITDFCFSE-DGKWLLSSGMDGSLRIWDVILARQIDAIHVDV-------SITALS 605 (809)
Q Consensus 538 ~I~v~d~-~~~~~~~~~~---~h~~~I~~l~fsp-dg~~l~s~s~D~~I~vwd~~~~~~i~~~~~~~-------~v~~l~ 605 (809)
..+++.+ .....+.++. -+.....+..|.- +|+...- .+++|.+|++++-+....+..+. .+.++.
T Consensus 207 ~ykL~~l~~~~~~~~El~s~~~e~~~~~~s~f~Y~~G~LY~l--~~~~i~~ysip~f~~~~tI~l~~ii~~~~~~~vSl~ 284 (670)
T PF10395_consen 207 SYKLISLSNESSSIFELSSTILENFGLEDSKFCYQFGKLYQL--SKKTISSYSIPNFQIQKTISLPSIIDKESDDLVSLK 284 (670)
T ss_pred EEEEEEeccCCcceEEeehheeccCCcccceEEEeCCEEEEE--eCCEEEEEEcCCceEEEEEEechhhccccccceEee
Confidence 5677777 1122222332 1222223333332 5654433 67899999999988888777652 233333
Q ss_pred EcCCCCeEEEEEeCCCeEEEeecC
Q 003579 606 LSPNMDVLATAHVDQNGVYLWVNR 629 (809)
Q Consensus 606 ~spdg~~lat~~~d~~~i~lW~~~ 629 (809)
- |+-+++.-+..+ .|++.+.+
T Consensus 285 ~-~s~nRvLLs~~n--kIyLld~~ 305 (670)
T PF10395_consen 285 P-PSPNRVLLSVNN--KIYLLDLK 305 (670)
T ss_pred c-CCCCeEEEEcCC--EEEEEeeh
Confidence 2 333344444333 49999875
No 472
>PF10313 DUF2415: Uncharacterised protein domain (DUF2415); InterPro: IPR019417 This entry represents a short (30 residues) domain of unknown function found in a family of fungal proteins. It contains a characteristic DLL sequence motif.
Probab=89.42 E-value=1.6 Score=29.26 Aligned_cols=33 Identities=30% Similarity=0.385 Sum_probs=27.2
Q ss_pred CcEEEEEEecCCC--CEEEEEcCCCcEEEEECCCc
Q 003579 225 GAVTALAFSSDGQ--PLLASGASSGVISIWNLEKR 257 (809)
Q Consensus 225 ~~V~~l~fs~dg~--~~lasg~~dg~I~iwdl~~~ 257 (809)
+.|.++.|+|+.. .+|+.+-..|.|.|+|++++
T Consensus 1 GAvR~~kFsP~~~~~DLL~~~E~~g~vhi~D~R~~ 35 (43)
T PF10313_consen 1 GAVRCCKFSPEPGGNDLLAWAEHQGRVHIVDTRSN 35 (43)
T ss_pred CCeEEEEeCCCCCcccEEEEEccCCeEEEEEcccC
Confidence 4689999997543 58888888999999999853
No 473
>PF14781 BBS2_N: Ciliary BBSome complex subunit 2, N-terminal
Probab=89.34 E-value=14 Score=32.12 Aligned_cols=120 Identities=17% Similarity=0.104 Sum_probs=74.6
Q ss_pred EcCCCCEEEEEeCCCcEEEEECCCCceeeeeeCcccccccCccccEEEEEEcC-----CCCEEEEEeCcCeEEEEECCCC
Q 003579 432 ISACGNFAVLGTAGGWIERFNLQSGISRGSYLDMSERSNYAHNGEVVGVACDS-----TNTLMISAGYHGDIKVWDFKGR 506 (809)
Q Consensus 432 ~s~~g~~l~~g~~~g~i~i~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~-----~~~~l~s~~~dg~i~iwd~~~~ 506 (809)
|.....-|++++..|.|.+++.........-. ......-.-...|++++-.+ ....|+.|+. ..|..||+...
T Consensus 6 fDG~~pcL~~aT~~gKV~IH~ph~~~~~~~~~-~~~i~~LNin~~italaaG~l~~~~~~D~LliGt~-t~llaYDV~~N 83 (136)
T PF14781_consen 6 FDGVHPCLACATTGGKVFIHNPHERGQRTGRQ-DSDISFLNINQEITALAAGRLKPDDGRDCLLIGTQ-TSLLAYDVENN 83 (136)
T ss_pred eCCCceeEEEEecCCEEEEECCCccccccccc-cCceeEEECCCceEEEEEEecCCCCCcCEEEEecc-ceEEEEEcccC
Confidence 44445568888999999999876543222100 00000113456788887654 2355665554 67899999988
Q ss_pred ceeeeeecCCCeEEEEEeeC---CCEEEEEeCCCeEEEEEcCCCeEEEEE
Q 003579 507 DLKSRWEVGCSLVKIVYHRV---NGLLATVADDLVIRLFDVVALRMVRKF 553 (809)
Q Consensus 507 ~~~~~~~~~~~i~~~~~s~~---~~~la~~~~d~~I~v~d~~~~~~~~~~ 553 (809)
.-+...+.+..+.++.+-.- ..-++..+.+..|.-||.+..+...+.
T Consensus 84 ~d~Fyke~~DGvn~i~~g~~~~~~~~l~ivGGncsi~Gfd~~G~e~fWtV 133 (136)
T PF14781_consen 84 SDLFYKEVPDGVNAIVIGKLGDIPSPLVIVGGNCSIQGFDYEGNEIFWTV 133 (136)
T ss_pred chhhhhhCccceeEEEEEecCCCCCcEEEECceEEEEEeCCCCcEEEEEe
Confidence 77777677778888877542 234555556778888887766554443
No 474
>KOG1900 consensus Nuclear pore complex, Nup155 component (D Nup154, sc Nup157/Nup170) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=88.74 E-value=6.6 Score=46.81 Aligned_cols=139 Identities=15% Similarity=0.293 Sum_probs=91.1
Q ss_pred CCCeEEEEeCCCCceEEEEcCCCCCEEEEE--------EcCCCCEEEEEeCCCeEEEEEeeCCeEE---------EEEec
Q 003579 159 QEGSLQLWNISTKKKLYEFKGWGSSISSCV--------SSPALDVVAVGCSDGKIHVHNVRYDEEL---------VTFTH 221 (809)
Q Consensus 159 ~dg~i~lwd~~~~~~~~~~~~~~~~I~~l~--------~sp~~~~la~g~~dg~i~iwd~~~~~~~---------~~~~~ 221 (809)
.|+.+.+||.+++.....+.+....|..+. |-|.-+++.+-..--.|.++-+..++.. .++..
T Consensus 97 iDn~L~lWny~~~~e~~~~d~~shtIl~V~LvkPkpgvFv~~IqhlLvvaT~~ei~ilgV~~~~~~~~~~~f~~~~~i~~ 176 (1311)
T KOG1900|consen 97 IDNNLFLWNYESDNELAEYDGLSHTILKVGLVKPKPGVFVPEIQHLLVVATPVEIVILGVSFDEFTGELSIFNTSFKISV 176 (1311)
T ss_pred eCCeEEEEEcCCCCccccccchhhhheeeeeecCCCCcchhhhheeEEecccceEEEEEEEeccccCcccccccceeeec
Confidence 578899999999888888888777777765 3344455555555566777766533211 11222
Q ss_pred cCCCcEEEEEEecCCCCEEEEEcCCCcEE--EEECCCc---e-e----------------eeeeecccccceEEEEEecC
Q 003579 222 SMRGAVTALAFSSDGQPLLASGASSGVIS--IWNLEKR---R-L----------------QSVIREAHDNAIISLHFFAN 279 (809)
Q Consensus 222 ~~~~~V~~l~fs~dg~~~lasg~~dg~I~--iwdl~~~---~-~----------------~~~~~~~h~~~V~~l~~~~~ 279 (809)
. .-.|.|+....+|+ ++.+ +.||.|. +|....+ + + +-.+...+..+|..+.....
T Consensus 177 d-g~~V~~I~~t~nGR-IF~~-G~dg~lyEl~Yq~~~gWf~~rc~Kiclt~s~ls~lvPs~~~~~~~~~dpI~qi~ID~S 253 (1311)
T KOG1900|consen 177 D-GVSVNCITYTENGR-IFFA-GRDGNLYELVYQAEDGWFGSRCRKICLTKSVLSSLVPSLLSVPGSSKDPIRQITIDNS 253 (1311)
T ss_pred C-CceEEEEEeccCCc-EEEe-ecCCCEEEEEEeccCchhhcccccccCchhHHHHhhhhhhcCCCCCCCcceeeEeccc
Confidence 1 45789999888888 5554 5566443 1222222 1 1 01111256779999999888
Q ss_pred CCEEEEEcCCCcEEEEEeeCC
Q 003579 280 EPVLMSASADNSIKMWIFDTT 300 (809)
Q Consensus 280 ~~~l~s~s~d~~i~vw~~~~~ 300 (809)
...+.+-+..++|.+|++...
T Consensus 254 R~IlY~lsek~~v~~Y~i~~~ 274 (1311)
T KOG1900|consen 254 RNILYVLSEKGTVSAYDIGGN 274 (1311)
T ss_pred cceeeeeccCceEEEEEccCC
Confidence 889999999999999998764
No 475
>KOG4460 consensus Nuclear pore complex, Nup88/rNup84 component [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=88.70 E-value=11 Score=40.23 Aligned_cols=29 Identities=17% Similarity=0.027 Sum_probs=24.2
Q ss_pred CCCeEEEEEcCCCCEEEEEeCCCcEEEEE
Q 003579 424 PTAVKACTISACGNFAVLGTAGGWIERFN 452 (809)
Q Consensus 424 ~~~v~~v~~s~~g~~l~~g~~~g~i~i~~ 452 (809)
.-.|..+.+++.|..++..+.+|.+.++=
T Consensus 103 ~feV~~vl~s~~GS~VaL~G~~Gi~vMeL 131 (741)
T KOG4460|consen 103 LFEVYQVLLSPTGSHVALIGIKGLMVMEL 131 (741)
T ss_pred eEEEEEEEecCCCceEEEecCCeeEEEEc
Confidence 45678889999999999999999776654
No 476
>PHA02790 Kelch-like protein; Provisional
Probab=88.46 E-value=29 Score=38.48 Aligned_cols=180 Identities=7% Similarity=-0.057 Sum_probs=85.7
Q ss_pred cCCeEEEEEEcC-----CeEEEEEcCccEEEEecCCC-CCCcEEEEEeCCeEEEEECC----eEEEEECCeeEEE----E
Q 003579 24 LGTENFVTVSVG-----KAFHIYNCAKLNLVLVGPQL-PKKIRALASYRDYTFAAYGN----HIAVVKRAHQVAT----W 89 (809)
Q Consensus 24 ~~~~~~i~~~~~-----~~i~iwd~~~~~~~~~~~~~-~~~I~~la~~~~~~~~a~g~----~i~vw~~~~~~~~----~ 89 (809)
.++..+++++.+ .++..||..+.+-....+-. +..-.+++...+..|++.|. .+..|+..+..-. +
T Consensus 270 ~~~~lyviGG~~~~~~~~~v~~Ydp~~~~W~~~~~m~~~r~~~~~v~~~~~iYviGG~~~~~sve~ydp~~n~W~~~~~l 349 (480)
T PHA02790 270 VGEVVYLIGGWMNNEIHNNAIAVNYISNNWIPIPPMNSPRLYASGVPANNKLYVVGGLPNPTSVERWFHGDAAWVNMPSL 349 (480)
T ss_pred ECCEEEEEcCCCCCCcCCeEEEEECCCCEEEECCCCCchhhcceEEEECCEEEEECCcCCCCceEEEECCCCeEEECCCC
Confidence 556667777653 35778999887765544321 22223445556667766653 2777775432111 2
Q ss_pred ccccccEEEEEEeCCEEEEEeCCC---cEEEEEcCCCccccceeeeEEcCCccccEEEEeCCCCCCEEEEEeCCCeEEEE
Q 003579 90 SRHSAKVNLLLLFGEHILSIDIDG---NMFIWAFKGIEENLAPVGHVKLDDKFTPTCIMHPDTYLNKVIVGSQEGSLQLW 166 (809)
Q Consensus 90 ~~h~~~V~~l~~~g~~l~s~~~dg---~i~vWd~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~l~~~~~dg~i~lw 166 (809)
.........+..+|...+.|+.++ .+..||..+.+-.. ......... ..++..-++ +|++.+ |.+.+|
T Consensus 350 ~~~r~~~~~~~~~g~IYviGG~~~~~~~ve~ydp~~~~W~~--~~~m~~~r~--~~~~~~~~~---~IYv~G--G~~e~y 420 (480)
T PHA02790 350 LKPRCNPAVASINNVIYVIGGHSETDTTTEYLLPNHDQWQF--GPSTYYPHY--KSCALVFGR---RLFLVG--RNAEFY 420 (480)
T ss_pred CCCCcccEEEEECCEEEEecCcCCCCccEEEEeCCCCEEEe--CCCCCCccc--cceEEEECC---EEEEEC--CceEEe
Confidence 211112222334555556666543 46778876543211 111111111 112223333 555544 457788
Q ss_pred eCCCCce--EEEEcCCCCCEEEEEEcCCCCEEEEEeCC-----CeEEEEEeeCCe
Q 003579 167 NISTKKK--LYEFKGWGSSISSCVSSPALDVVAVGCSD-----GKIHVHNVRYDE 214 (809)
Q Consensus 167 d~~~~~~--~~~~~~~~~~I~~l~~sp~~~~la~g~~d-----g~i~iwd~~~~~ 214 (809)
|.++.+= +..+.........+ .-+++..++|+.+ ..+..||..+++
T Consensus 421 dp~~~~W~~~~~m~~~r~~~~~~--v~~~~IYviGG~~~~~~~~~ve~Yd~~~~~ 473 (480)
T PHA02790 421 CESSNTWTLIDDPIYPRDNPELI--IVDNKLLLIGGFYRGSYIDTIEVYNNRTYS 473 (480)
T ss_pred cCCCCcEeEcCCCCCCccccEEE--EECCEEEEECCcCCCcccceEEEEECCCCe
Confidence 8876532 11122111222222 2356677777654 345566655443
No 477
>TIGR03606 non_repeat_PQQ dehydrogenase, PQQ-dependent, s-GDH family. PQQ, or pyrroloquinoline-quinone, serves as a cofactor for a number of sugar and alcohol dehydrogenases in a limited number of bacterial species. Most characterized PQQ-dependent enzymes have multiple repeats of a sequence region described by pfam01011 (PQQ enzyme repeat), but this protein family in unusual in lacking that repeat. Below the noise cutoff are related proteins mostly from species that lack PQQ biosynthesis.
Probab=88.41 E-value=42 Score=36.50 Aligned_cols=72 Identities=21% Similarity=0.153 Sum_probs=45.3
Q ss_pred CCCEEEEEeCCCeEEEEEcCCCe--E----EEEEecCCCCeeeEEECCCC-CEEEEEeCCCeEEEEEcCCccEEEEeeeC
Q 003579 526 VNGLLATVADDLVIRLFDVVALR--M----VRKFEGHTDRITDFCFSEDG-KWLLSSGMDGSLRIWDVILARQIDAIHVD 598 (809)
Q Consensus 526 ~~~~la~~~~d~~I~v~d~~~~~--~----~~~~~~h~~~I~~l~fspdg-~~l~s~s~D~~I~vwd~~~~~~i~~~~~~ 598 (809)
++.+|+.+-..+.|+...++..+ . ...|.. .++|.++..+||| .+.+..+.+|.++= +++.....+..+
T Consensus 368 ~g~llv~~L~~~~l~r~~l~~~~~~v~~~~~~~~~~-~~RiRdv~~~pDg~~iy~~td~~g~~~~---~~~~~~~~~~~~ 443 (454)
T TIGR03606 368 ENSLLIPSLKRGVIYRIKLDPDYSTVYGDAVPMFKT-NNRYRDVIASPDGNVLYVATDNFGNVQK---DDGSVTNTLENP 443 (454)
T ss_pred CCCEEEEEcCCCeEEEEEecCCcceecceeEEeecC-CCeeEEEEECCCCCEEEEEEcCCCcccc---CCCCceeEecCC
Confidence 36788888888888888886442 2 233444 6799999999997 54455556665432 334444444443
Q ss_pred cce
Q 003579 599 VSI 601 (809)
Q Consensus 599 ~~v 601 (809)
..|
T Consensus 444 ~~~ 446 (454)
T TIGR03606 444 GSI 446 (454)
T ss_pred CeE
Confidence 333
No 478
>PF02333 Phytase: Phytase; InterPro: IPR003431 Phytase (3.1.3.8 from EC) (phytate 3-phosphatase) is a secreted enzyme which hydrolyses phytate to release inorganic phosphate. This family appears to represent a novel enzyme that shows phytase activity () and has been shown to consist of a single structural unit with a six-bladed propeller folding architecture ().; GO: 0016158 3-phytase activity; PDB: 3AMS_A 3AMR_A 1QLG_A 2POO_A 1H6L_A 1CVM_A 1POO_A.
Probab=87.78 E-value=40 Score=35.53 Aligned_cols=197 Identities=16% Similarity=0.224 Sum_probs=111.3
Q ss_pred eeEEeecCCceEEEEEeeeeeecceeeecCCCCCCCeEEEEEc----CCCCE--EEEEe-CC---CcEEEEECCC--Cce
Q 003579 391 NVVTCHMDTAQAYVWRLQNFVLGEHILRPCPENPTAVKACTIS----ACGNF--AVLGT-AG---GWIERFNLQS--GIS 458 (809)
Q Consensus 391 ~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~v~~v~~s----~~g~~--l~~g~-~~---g~i~i~~~~~--~~~ 458 (809)
.++.+....+-+.+|++..+.+.... .+....+.+- -.|+. +++++ .+ ..|++|.+.. +..
T Consensus 69 SlIigTdK~~GL~VYdL~Gk~lq~~~-------~Gr~NNVDvrygf~l~g~~vDlavas~R~~g~n~l~~f~id~~~g~L 141 (381)
T PF02333_consen 69 SLIIGTDKKGGLYVYDLDGKELQSLP-------VGRPNNVDVRYGFPLNGKTVDLAVASDRSDGRNSLRLFRIDPDTGEL 141 (381)
T ss_dssp -EEEEEETTTEEEEEETTS-EEEEE--------SS-EEEEEEEEEEEETTEEEEEEEEEE-CCCT-EEEEEEEETTTTEE
T ss_pred ceEEEEeCCCCEEEEcCCCcEEEeec-------CCCcceeeeecceecCCceEEEEEEecCcCCCCeEEEEEecCCCCcc
Confidence 35555555678889998876653221 1333444332 13433 33443 32 4688887753 332
Q ss_pred eeeeeCcccccccCccccEEEEEE--cC-CCC-EEEEEeCcCeEEEEECC---CC----ceeeeeecCCCeEEEEEeeCC
Q 003579 459 RGSYLDMSERSNYAHNGEVVGVAC--DS-TNT-LMISAGYHGDIKVWDFK---GR----DLKSRWEVGCSLVKIVYHRVN 527 (809)
Q Consensus 459 ~~~~~~~~~~~~~~h~~~v~~l~~--~~-~~~-~l~s~~~dg~i~iwd~~---~~----~~~~~~~~~~~i~~~~~s~~~ 527 (809)
..+..... ........+.++|+ ++ +|+ +++..+.+|.+..|.+. .+ ++++++...+.+..|+.....
T Consensus 142 -~~v~~~~~-p~~~~~~e~yGlcly~~~~~g~~ya~v~~k~G~~~Qy~L~~~~~g~v~~~lVR~f~~~sQ~EGCVVDDe~ 219 (381)
T PF02333_consen 142 -TDVTDPAA-PIATDLSEPYGLCLYRSPSTGALYAFVNGKDGRVEQYELTDDGDGKVSATLVREFKVGSQPEGCVVDDET 219 (381)
T ss_dssp -EE-CBTTC--EE-SSSSEEEEEEEE-TTT--EEEEEEETTSEEEEEEEEE-TTSSEEEEEEEEEE-SS-EEEEEEETTT
T ss_pred -eEcCCCCc-ccccccccceeeEEeecCCCCcEEEEEecCCceEEEEEEEeCCCCcEeeEEEEEecCCCcceEEEEeccc
Confidence 22211000 00112235778886 33 344 56667789998888764 33 467888888999999999999
Q ss_pred CEEEEEeCCCeEEEEEcCC-----CeEEEEEec--CCCCeeeEEEC--CCC-CEEEEEe-CCCeEEEEEcCC-ccEEEEe
Q 003579 528 GLLATVADDLVIRLFDVVA-----LRMVRKFEG--HTDRITDFCFS--EDG-KWLLSSG-MDGSLRIWDVIL-ARQIDAI 595 (809)
Q Consensus 528 ~~la~~~~d~~I~v~d~~~-----~~~~~~~~~--h~~~I~~l~fs--pdg-~~l~s~s-~D~~I~vwd~~~-~~~i~~~ 595 (809)
..|.++-++.-|+-|+.+. ++.+....+ ....|-.|++- ++| .||+.++ .+++..||+... ...+..|
T Consensus 220 g~LYvgEE~~GIW~y~Aep~~~~~~~~v~~~~g~~l~aDvEGlaly~~~~g~gYLivSsQG~~sf~Vy~r~~~~~~~g~f 299 (381)
T PF02333_consen 220 GRLYVGEEDVGIWRYDAEPEGGNDRTLVASADGDGLVADVEGLALYYGSDGKGYLIVSSQGDNSFAVYDREGPNAYVGSF 299 (381)
T ss_dssp TEEEEEETTTEEEEEESSCCC-S--EEEEEBSSSSB-S-EEEEEEEE-CCC-EEEEEEEGGGTEEEEEESSTT--EEEEE
T ss_pred CCEEEecCccEEEEEecCCCCCCcceeeecccccccccCccceEEEecCCCCeEEEEEcCCCCeEEEEecCCCCcccceE
Confidence 9999999999999998862 233433333 34567777774 344 3565554 678999999875 3445555
Q ss_pred e
Q 003579 596 H 596 (809)
Q Consensus 596 ~ 596 (809)
+
T Consensus 300 ~ 300 (381)
T PF02333_consen 300 R 300 (381)
T ss_dssp E
T ss_pred E
Confidence 4
No 479
>PF11635 Med16: Mediator complex subunit 16; InterPro: IPR021665 Mediator is a large complex of up to 33 proteins that is conserved from plants through fungi to humans - the number and representation of individual subunits varying with species [],[]. It is arranged into four different sections, a core, a head, a tail and a kinase-activity part, and the number of subunits within each of these is what varies with species. Overall, Mediator regulates the transcriptional activity of RNA polymerase II but it would appear that each of the four different sections has a slightly different function. Med16 is one of the subunits of the Tail portion of the Mediator complex and is required for lipopolysaccharide gene-expression []. Several members including the human protein, Q9Y2X0 from SWISSPROT, have one or more WD40 domains on them, PF00400 from PFAM.
Probab=87.68 E-value=54 Score=38.68 Aligned_cols=76 Identities=13% Similarity=0.034 Sum_probs=54.6
Q ss_pred CCCeEEEEEcCCCCEEEEEeCCCcEEEEECCCCceeeee----eCccccc-------ccCccccEEEEEEcCCCCEEEEE
Q 003579 424 PTAVKACTISACGNFAVLGTAGGWIERFNLQSGISRGSY----LDMSERS-------NYAHNGEVVGVACDSTNTLMISA 492 (809)
Q Consensus 424 ~~~v~~v~~s~~g~~l~~g~~~g~i~i~~~~~~~~~~~~----~~~~~~~-------~~~h~~~v~~l~~~~~~~~l~s~ 492 (809)
...|.+++...-+.++++...||+|.++|-.+-+..... ....... ...+...+..++|+|.+..++.-
T Consensus 259 ~~~V~si~~~~~~~~v~~~~~DGsI~~~dr~t~~~~~~~~~~~~~~~~v~s~~~~Gf~fp~~~~~~~vafSPt~c~~v~~ 338 (753)
T PF11635_consen 259 NKRVVSITSPELDIVVAFAFSDGSIEFRDRNTMKELNETRTNGEPPNTVTSLFQAGFHFPCIQPPLHVAFSPTMCSLVQI 338 (753)
T ss_pred CCeEEEEEecccCcEEEEEEcCCeEEEEecCcchhhcccccccCCccccccccccccccccCCCCceEEECcccceEEEE
Confidence 367889999889999999999999999998877655444 1111000 01112245568899999999999
Q ss_pred eCcCeEE
Q 003579 493 GYHGDIK 499 (809)
Q Consensus 493 ~~dg~i~ 499 (809)
..+|.+.
T Consensus 339 ~~~~~~~ 345 (753)
T PF11635_consen 339 DEDGKTK 345 (753)
T ss_pred ecCCCce
Confidence 9888865
No 480
>COG4257 Vgb Streptogramin lyase [Defense mechanisms]
Probab=87.61 E-value=30 Score=34.00 Aligned_cols=235 Identities=13% Similarity=0.075 Sum_probs=141.3
Q ss_pred CCCEEEEEEcCCCCEEEEEeCCCeEEEEEeeCCeEEEEEeccCCCcEEEEEEecCCCCEEEEEcCCCcEEEEECCCceee
Q 003579 181 GSSISSCVSSPALDVVAVGCSDGKIHVHNVRYDEELVTFTHSMRGAVTALAFSSDGQPLLASGASSGVISIWNLEKRRLQ 260 (809)
Q Consensus 181 ~~~I~~l~~sp~~~~la~g~~dg~i~iwd~~~~~~~~~~~~~~~~~V~~l~fs~dg~~~lasg~~dg~I~iwdl~~~~~~ 260 (809)
...-..++.+|||.+-.++...|.|--.|..+|+....-... ...-..+..-|||. .-++-+.. -|.-.|-++....
T Consensus 61 G~ap~dvapapdG~VWft~qg~gaiGhLdP~tGev~~ypLg~-Ga~Phgiv~gpdg~-~Witd~~~-aI~R~dpkt~evt 137 (353)
T COG4257 61 GSAPFDVAPAPDGAVWFTAQGTGAIGHLDPATGEVETYPLGS-GASPHGIVVGPDGS-AWITDTGL-AIGRLDPKTLEVT 137 (353)
T ss_pred CCCccccccCCCCceEEecCccccceecCCCCCceEEEecCC-CCCCceEEECCCCC-eeEecCcc-eeEEecCcccceE
Confidence 345567788999999999888888888888888765543332 45667788888887 33332222 4555565554332
Q ss_pred e-eeeccc-ccceEEEEEecCCCEEEEEcC---------CCcEEEEEeeCCCCCceeEEeccCCCCCCeeEEEecCCCEE
Q 003579 261 S-VIREAH-DNAIISLHFFANEPVLMSASA---------DNSIKMWIFDTTDGDPRLLRFRSGHSAPPLCIRFYANGRHI 329 (809)
Q Consensus 261 ~-~~~~~h-~~~V~~l~~~~~~~~l~s~s~---------d~~i~vw~~~~~~~~~~~~~~~~~h~~~v~~i~~~~~~~~l 329 (809)
. .+...| ........|.+.|++-+++.. .+.|++|.. ......+.|+-.|+|..-
T Consensus 138 ~f~lp~~~a~~nlet~vfD~~G~lWFt~q~G~yGrLdPa~~~i~vfpa--------------PqG~gpyGi~atpdGsvw 203 (353)
T COG4257 138 RFPLPLEHADANLETAVFDPWGNLWFTGQIGAYGRLDPARNVISVFPA--------------PQGGGPYGICATPDGSVW 203 (353)
T ss_pred EeecccccCCCcccceeeCCCccEEEeeccccceecCcccCceeeecc--------------CCCCCCcceEECCCCcEE
Confidence 2 111122 456778889999988887752 123333321 123456778888888777
Q ss_pred EEEECCCCEEEEEeeecccceecchhhHHHHHhhccchhhhhccCceeEEeeccccccccceeEEeecCCceEEEEEeee
Q 003579 330 LSAGQDRAFRLFSVIQDQQSRELSQRHVAKRARKLKMKEEELKLKPVIAFDCAEIRERDWCNVVTCHMDTAQAYVWRLQN 409 (809)
Q Consensus 330 ~s~~~dg~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~ 409 (809)
++.-.+..|-..|..... ...
T Consensus 204 yaslagnaiaridp~~~~-aev---------------------------------------------------------- 224 (353)
T COG4257 204 YASLAGNAIARIDPFAGH-AEV---------------------------------------------------------- 224 (353)
T ss_pred EEeccccceEEcccccCC-cce----------------------------------------------------------
Confidence 766666666666644331 111
Q ss_pred eeecceeeecCCCCCCCeEEEEEcCCCCEEEEEeCCCcEEEEECCCCceeeeeeCcccccccCccccEEEEEEcCCCCEE
Q 003579 410 FVLGEHILRPCPENPTAVKACTISACGNFAVLGTAGGWIERFNLQSGISRGSYLDMSERSNYAHNGEVVGVACDSTNTLM 489 (809)
Q Consensus 410 ~~~~~~~~~~~~~~~~~v~~v~~s~~g~~l~~g~~~g~i~i~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~l 489 (809)
+..........+.+..+|.|+.-++-...|.+..||.+... -.++. +.+.+..-.++.++..++.-
T Consensus 225 -------~p~P~~~~~gsRriwsdpig~~wittwg~g~l~rfdPs~~s-W~eyp------LPgs~arpys~rVD~~grVW 290 (353)
T COG4257 225 -------VPQPNALKAGSRRIWSDPIGRAWITTWGTGSLHRFDPSVTS-WIEYP------LPGSKARPYSMRVDRHGRVW 290 (353)
T ss_pred -------ecCCCcccccccccccCccCcEEEeccCCceeeEeCccccc-ceeee------CCCCCCCcceeeeccCCcEE
Confidence 11111212344556667778888887788899999887655 22332 23455556677777776655
Q ss_pred EEEeCcCeEEEEECCC
Q 003579 490 ISAGYHGDIKVWDFKG 505 (809)
Q Consensus 490 ~s~~~dg~i~iwd~~~ 505 (809)
.+-...|.|.-+|-.+
T Consensus 291 ~sea~agai~rfdpet 306 (353)
T COG4257 291 LSEADAGAIGRFDPET 306 (353)
T ss_pred eeccccCceeecCccc
Confidence 5544455555555443
No 481
>TIGR03606 non_repeat_PQQ dehydrogenase, PQQ-dependent, s-GDH family. PQQ, or pyrroloquinoline-quinone, serves as a cofactor for a number of sugar and alcohol dehydrogenases in a limited number of bacterial species. Most characterized PQQ-dependent enzymes have multiple repeats of a sequence region described by pfam01011 (PQQ enzyme repeat), but this protein family in unusual in lacking that repeat. Below the noise cutoff are related proteins mostly from species that lack PQQ biosynthesis.
Probab=87.23 E-value=49 Score=35.98 Aligned_cols=101 Identities=14% Similarity=0.121 Sum_probs=60.0
Q ss_pred ccEEEEEEcCCCCEEEEEeCcCeEEEEECCCCcee--eee----e--cCCCeEEEEEeeCC------CEEEEEe------
Q 003579 475 GEVVGVACDSTNTLMISAGYHGDIKVWDFKGRDLK--SRW----E--VGCSLVKIVYHRVN------GLLATVA------ 534 (809)
Q Consensus 475 ~~v~~l~~~~~~~~l~s~~~dg~i~iwd~~~~~~~--~~~----~--~~~~i~~~~~s~~~------~~la~~~------ 534 (809)
...++|+|.|+++++++--..|.|++++-.++... ..+ . .......++++|+- .+|.+..
T Consensus 30 ~~Pw~maflPDG~llVtER~~G~I~~v~~~~~~~~~~~~l~~v~~~~ge~GLlglal~PdF~~~~~n~~lYvsyt~~~~~ 109 (454)
T TIGR03606 30 NKPWALLWGPDNQLWVTERATGKILRVNPETGEVKVVFTLPEIVNDAQHNGLLGLALHPDFMQEKGNPYVYISYTYKNGD 109 (454)
T ss_pred CCceEEEEcCCCeEEEEEecCCEEEEEeCCCCceeeeecCCceeccCCCCceeeEEECCCccccCCCcEEEEEEeccCCC
Confidence 45688999999988877665699999986554321 111 1 24678899999874 3444432
Q ss_pred ----CCCeEEEEEcCCC-------e-EEEEEe---cCCCCeeeEEECCCCCEEEEEeC
Q 003579 535 ----DDLVIRLFDVVAL-------R-MVRKFE---GHTDRITDFCFSEDGKWLLSSGM 577 (809)
Q Consensus 535 ----~d~~I~v~d~~~~-------~-~~~~~~---~h~~~I~~l~fspdg~~l~s~s~ 577 (809)
....|.-|.+... + ++..+. .|. -..|+|.|||.+.++.+.
T Consensus 110 ~~~~~~~~I~R~~l~~~~~~l~~~~~Il~~lP~~~~H~--GgrI~FgPDG~LYVs~GD 165 (454)
T TIGR03606 110 KELPNHTKIVRYTYDKSTQTLEKPVDLLAGLPAGNDHN--GGRLVFGPDGKIYYTIGE 165 (454)
T ss_pred CCccCCcEEEEEEecCCCCccccceEEEecCCCCCCcC--CceEEECCCCcEEEEECC
Confidence 1234444544311 1 111121 233 346789999987776554
No 482
>PF10168 Nup88: Nuclear pore component; InterPro: IPR019321 Nup88 can be divided into two structural domains; the N-terminal two-thirds of the protein have no obvious structural motifs. It is, however, where it binds to Nup98; one of the components of the nuclear pore. The C-terminal end is a predicted coiled-coil domain []. Nup88 is over expressed in tumour cells [].
Probab=87.22 E-value=25 Score=40.79 Aligned_cols=28 Identities=14% Similarity=0.116 Sum_probs=22.3
Q ss_pred CCCeEEEEEcCCCCEEEEEeCCCcEEEE
Q 003579 424 PTAVKACTISACGNFAVLGTAGGWIERF 451 (809)
Q Consensus 424 ~~~v~~v~~s~~g~~l~~g~~~g~i~i~ 451 (809)
.-.|..+.++++|++++..+..|...+.
T Consensus 84 ~f~v~~i~~n~~g~~lal~G~~~v~V~~ 111 (717)
T PF10168_consen 84 LFEVHQISLNPTGSLLALVGPRGVVVLE 111 (717)
T ss_pred ceeEEEEEECCCCCEEEEEcCCcEEEEE
Confidence 3678999999999999998887744443
No 483
>TIGR03547 muta_rot_YjhT mutatrotase, YjhT family. Members of this protein family contain multiple copies of the beta-propeller-forming Kelch repeat. All are full-length homologs to YjhT of Escherichia coli, which has been identified as a mutarotase for sialic acid. This protein improves bacterial ability to obtain host sialic acid, and thus serves as a virulence factor. Some bacteria carry what appears to be a cyclically permuted homolog of this protein.
Probab=86.61 E-value=46 Score=35.04 Aligned_cols=124 Identities=13% Similarity=0.089 Sum_probs=58.0
Q ss_pred CeEEEEECCCCceeeeeecC--CCeEEEEEeeCCCEEEEEeCC------CeEEEEEcCC----CeEEEEEec-----CCC
Q 003579 496 GDIKVWDFKGRDLKSRWEVG--CSLVKIVYHRVNGLLATVADD------LVIRLFDVVA----LRMVRKFEG-----HTD 558 (809)
Q Consensus 496 g~i~iwd~~~~~~~~~~~~~--~~i~~~~~s~~~~~la~~~~d------~~I~v~d~~~----~~~~~~~~~-----h~~ 558 (809)
..+..||..+.+-...-... ......+..-++++.+.|+.+ ..+.++++.. +..+..+.. |.+
T Consensus 168 ~~v~~YDp~t~~W~~~~~~p~~~r~~~~~~~~~~~iyv~GG~~~~~~~~~~~~~y~~~~~~~~W~~~~~m~~~r~~~~~~ 247 (346)
T TIGR03547 168 KNVLSYDPSTNQWRNLGENPFLGTAGSAIVHKGNKLLLINGEIKPGLRTAEVKQYLFTGGKLEWNKLPPLPPPKSSSQEG 247 (346)
T ss_pred ceEEEEECCCCceeECccCCCCcCCCceEEEECCEEEEEeeeeCCCccchheEEEEecCCCceeeecCCCCCCCCCcccc
Confidence 45788887765443322211 111222334467777777643 1345565532 222222211 111
Q ss_pred CeeeEEECCCCCEEEEEeCC----------------------CeEEEEEcCCccEEEEeeeCcc-eEEEEEcCCCCeEEE
Q 003579 559 RITDFCFSEDGKWLLSSGMD----------------------GSLRIWDVILARQIDAIHVDVS-ITALSLSPNMDVLAT 615 (809)
Q Consensus 559 ~I~~l~fspdg~~l~s~s~D----------------------~~I~vwd~~~~~~i~~~~~~~~-v~~l~~spdg~~lat 615 (809)
.....+...+++..+.|+.+ ..+.+||..+.+....-..+.+ ....+..-+++.++.
T Consensus 248 ~~~~~a~~~~~~Iyv~GG~~~~~~~~~~~~~~~~~~~~~~~~~~~e~yd~~~~~W~~~~~lp~~~~~~~~~~~~~~iyv~ 327 (346)
T TIGR03547 248 LAGAFAGISNGVLLVAGGANFPGAQENYKNGKLYAHEGLIKAWSSEVYALDNGKWSKVGKLPQGLAYGVSVSWNNGVLLI 327 (346)
T ss_pred ccEEeeeEECCEEEEeecCCCCCchhhhhcCCccccCCCCceeEeeEEEecCCcccccCCCCCCceeeEEEEcCCEEEEE
Confidence 11111223477777887753 1467888877654333222222 112223346666777
Q ss_pred EEeC
Q 003579 616 AHVD 619 (809)
Q Consensus 616 ~~~d 619 (809)
++.+
T Consensus 328 GG~~ 331 (346)
T TIGR03547 328 GGEN 331 (346)
T ss_pred eccC
Confidence 6654
No 484
>COG4590 ABC-type uncharacterized transport system, permease component [General function prediction only]
Probab=86.44 E-value=21 Score=37.53 Aligned_cols=236 Identities=15% Similarity=0.181 Sum_probs=116.9
Q ss_pred EeCCEEEEEeCCCcEEEEEcCCCcccc-ceeeeEEcCCccccEEEEeCCCCCCEEEEEeCCCeEEEEeCCCC----ceEE
Q 003579 101 LFGEHILSIDIDGNMFIWAFKGIEENL-APVGHVKLDDKFTPTCIMHPDTYLNKVIVGSQEGSLQLWNISTK----KKLY 175 (809)
Q Consensus 101 ~~g~~l~s~~~dg~i~vWd~~~~~~~~-~~~~~~~~~~~~~~~~~~~p~~~~~~l~~~~~dg~i~lwd~~~~----~~~~ 175 (809)
..|+.-+--+.||.=..|.+....... .++++.......+ .-+-.|.+. ..++.|..+|.+.+....-. .+-.
T Consensus 78 ~~G~~a~l~~N~g~Gvf~~l~~~~aPAgs~I~~qal~~ppv-~wa~~~~gq-p~~alglsngqv~v~qp~~s~t~p~pg~ 155 (733)
T COG4590 78 AYGENAFLMSNDGVGVFWSLRSVSAPAGSPIQTQALGFPPV-LWAQTPPGQ-PWFALGLSNGQVAVVQPQLSHTMPTPGR 155 (733)
T ss_pred cccceeEEEecCCccEEEEecccCCCCCCchhhhhcCCCCc-ccccCCCCC-ceEEEeccCCeEEEEeccccccCCCCCc
Confidence 345555555667777778776543211 1233322222211 112223343 67888999999999864311 1112
Q ss_pred EEcCCCCCEEEEEEcCCCC--------EEEEEeCCCeEEEEEee-----------CCe-EEEEEeccCCCcEEEEEEecC
Q 003579 176 EFKGWGSSISSCVSSPALD--------VVAVGCSDGKIHVHNVR-----------YDE-ELVTFTHSMRGAVTALAFSSD 235 (809)
Q Consensus 176 ~~~~~~~~I~~l~~sp~~~--------~la~g~~dg~i~iwd~~-----------~~~-~~~~~~~~~~~~V~~l~fs~d 235 (809)
.|... -.-++..++|+ +...+..+....+++.. +.+ .+..+... ...|..+-..||
T Consensus 156 ~Fp~g---~~p~aLd~qgr~leh~~~~lalA~~~~~qf~~~~~t~~~~~L~g~~t~q~e~i~~L~~~-~~~v~qllL~Pd 231 (733)
T COG4590 156 EFPPG---LEPLALDEQGRLLEHPLQQLALALTAEAQFATYDNTQQIQILRGDRTTQQEIIRLLSVP-FSDVSQLLLTPD 231 (733)
T ss_pred cCCCC---CCccccCcccCcccchHHHhhhccchhhHHHHhhhhhhhhhhhcccCchhhhhhhcCCC-ccchHhhEECCC
Confidence 22211 11122333332 22233333333344332 112 22223222 457888889999
Q ss_pred CCCEEEEEcCCCcEEEEECCCceeeee--eecccc---cceE-EEEEecCCCEEEEEcCCCcEEEEEeeCCCCCceeE--
Q 003579 236 GQPLLASGASSGVISIWNLEKRRLQSV--IREAHD---NAII-SLHFFANEPVLMSASADNSIKMWIFDTTDGDPRLL-- 307 (809)
Q Consensus 236 g~~~lasg~~dg~I~iwdl~~~~~~~~--~~~~h~---~~V~-~l~~~~~~~~l~s~s~d~~i~vw~~~~~~~~~~~~-- 307 (809)
|+ .|..-+. ..+.++++.+...... ...... ..|+ .+.....+.-|..++.||.|..|-.-..++.+++-
T Consensus 232 g~-~LYv~~g-~~~~v~~L~~r~l~~rkl~~dspg~~~~~Vte~l~lL~Gg~SLLv~~~dG~vsQWFdvr~~~~p~l~h~ 309 (733)
T COG4590 232 GK-TLYVRTG-SELVVALLDKRSLQIRKLVDDSPGDSRHQVTEQLYLLSGGFSLLVVHEDGLVSQWFDVRRDGQPHLNHI 309 (733)
T ss_pred CC-EEEEecC-CeEEEEeecccccchhhhhhcCCCchHHHHHHHHHHHhCceeEEEEcCCCceeeeeeeecCCCCcceee
Confidence 99 5555443 6788888876643221 111111 1222 23334567778889999999999433333333332
Q ss_pred EeccCCCCCCeeEEEecCCCEEEEEECCCCEEEEEee
Q 003579 308 RFRSGHSAPPLCIRFYANGRHILSAGQDRAFRLFSVI 344 (809)
Q Consensus 308 ~~~~~h~~~v~~i~~~~~~~~l~s~~~dg~i~~wd~~ 344 (809)
+.++-...++..+.-..+.+-+++-+..|++..+...
T Consensus 310 R~f~l~pa~~~~l~pe~~rkgF~~l~~~G~L~~f~st 346 (733)
T COG4590 310 RNFKLAPAEVQFLLPETNRKGFYSLYRNGTLQSFYST 346 (733)
T ss_pred eccccCcccceeeccccccceEEEEcCCCceeeeecc
Confidence 2222222333333333345567777778887777643
No 485
>PF11725 AvrE: Pathogenicity factor; InterPro: IPR021085 This family is secreted by Gram-negative Gammaproteobacteria such as Pseudomonas syringae of tomato and Erwinia amylovora (Fire blight bacteria), amongst others. It is an essential pathogenicity factor of approximately 198 kDa. Its injection into the host-plant is dependent upon the bacterial type III or Hrp secretion system []. The family is long and carries a number of predicted functional regions, including an ERMS or endoplasmic reticulum membrane retention signal at both the C- and the N-termini, a leucine-zipper motif from residues 539-560, and a nuclear localisation signal at 1358-1361. This conserved AvrE-family of effectors is among the few that are required for full virulence of many phytopathogenic pseudomonads, erwinias and pantoeas [].
Probab=86.01 E-value=27 Score=43.23 Aligned_cols=153 Identities=10% Similarity=0.142 Sum_probs=89.9
Q ss_pred CCCCCEEEEEEcCCCCEEEEEeCCCeEEEEEeeCCeEEEEEeccCCCcEEEEEEecCCCCEEEEEcCCCcEEEEECCCce
Q 003579 179 GWGSSISSCVSSPALDVVAVGCSDGKIHVHNVRYDEELVTFTHSMRGAVTALAFSSDGQPLLASGASSGVISIWNLEKRR 258 (809)
Q Consensus 179 ~~~~~I~~l~~sp~~~~la~g~~dg~i~iwd~~~~~~~~~~~~~~~~~V~~l~fs~dg~~~lasg~~dg~I~iwdl~~~~ 258 (809)
.|...++.+..++++..+=. .|+.++.||....+-.. .......+++.|+-.-||+ +.| .++.. +-|+..+.
T Consensus 360 aH~A~LTgv~~~~~ge~lRl--Hd~~LY~~d~~~~~Wk~-~~~~~d~~~S~Ls~qgdG~-lYA---k~~~~-l~nLSs~~ 431 (1774)
T PF11725_consen 360 AHIAHLTGVHTDPDGEQLRL--HDDRLYQFDPNTARWKP-PPDKSDTPFSSLSRQGDGK-LYA---KDDDT-LVNLSSGQ 431 (1774)
T ss_pred HHHHHhhccccCCCCCeEEe--ecCceeeeccccceecC-CCCcccchhhhhcccCCCc-eEe---cCCCc-eeecCCCC
Confidence 45666777777888776655 46778888766442211 1122234566666666776 333 22221 34555443
Q ss_pred eeeeeecccccceEEEEEecCCCE-EEEEcCCCcEEEEEeeCCCCCcee----EEeccCCCCCCeeEEEecCCCEEEEEE
Q 003579 259 LQSVIREAHDNAIISLHFFANEPV-LMSASADNSIKMWIFDTTDGDPRL----LRFRSGHSAPPLCIRFYANGRHILSAG 333 (809)
Q Consensus 259 ~~~~~~~~h~~~V~~l~~~~~~~~-l~s~s~d~~i~vw~~~~~~~~~~~----~~~~~~h~~~v~~i~~~~~~~~l~s~~ 333 (809)
.... .-..+.+...++++.. +.++-....+.+|+++...+.++. ...+.+-.....+|.++++ .|+++.
T Consensus 432 ~~~~----~v~~l~sfSv~~~g~vA~L~~~d~q~~qL~~m~~~~a~~~p~~~~~L~L~dG~a~A~~VgLs~d--rLFvAD 505 (1774)
T PF11725_consen 432 MSEA----EVDKLKSFSVAPDGTVAMLTGKDGQTLQLHDMSPVDAPPTPRKTKTLQLADGKAQAQSVGLSND--RLFVAD 505 (1774)
T ss_pred cchh----hhhhcccccccCCCceeeeecCCCcceeeeccCccccccCccceeeeeccCCchhhhheeecCC--eEEEEe
Confidence 2221 1245677778888886 555555566799998877544322 2222333336677778766 688889
Q ss_pred CCCCEEEEEeee
Q 003579 334 QDRAFRLFSVIQ 345 (809)
Q Consensus 334 ~dg~i~~wd~~~ 345 (809)
.+|.++.=++..
T Consensus 506 seGkLYsa~l~~ 517 (1774)
T PF11725_consen 506 SEGKLYSADLPA 517 (1774)
T ss_pred CCCCEEeccccc
Confidence 999877666543
No 486
>KOG1983 consensus Tomosyn and related SNARE-interacting proteins [Intracellular trafficking, secretion, and vesicular transport]
Probab=85.78 E-value=68 Score=39.01 Aligned_cols=303 Identities=12% Similarity=0.006 Sum_probs=0.0
Q ss_pred CCCCCEEEEEEcCCCCEEEEEeCCCeEEEEEeeCCeEEEEEeccCCCcEEEEEEecCCCCEEEEEcCCCcEEEEECCCce
Q 003579 179 GWGSSISSCVSSPALDVVAVGCSDGKIHVHNVRYDEELVTFTHSMRGAVTALAFSSDGQPLLASGASSGVISIWNLEKRR 258 (809)
Q Consensus 179 ~~~~~I~~l~~sp~~~~la~g~~dg~i~iwd~~~~~~~~~~~~~~~~~V~~l~fs~dg~~~lasg~~dg~I~iwdl~~~~ 258 (809)
+.......++|+|...++|.|+.+|.|+++....-+............+..+-+-.... -..+...+..+.+|......
T Consensus 33 G~~~~~~~~afD~~q~llai~t~tg~i~~yg~~~ve~~~~~~~~~~~~~~~~~~~~~~s-~~~~l~~~~~~~~~~~~~~~ 111 (993)
T KOG1983|consen 33 GFPSTPSALAFDPTQGLLAIGTRTGAIKIYGQPGVEFVGLHPKQNQINVTRIELLVGIS-RNLVLSDDDSLHLWSIKIKT 111 (993)
T ss_pred CCCCCCcceeeccccceEEEEEecccEEEecccceEEEeccccccchhhhheeeeeccc-ccceeecccceeeecccccc
Q ss_pred eeeeeecccccceEEEEEecCCCEEEEEcCCCcEEEEEeeCCCCCceeEEeccCCCCCCeeEEEecCCCEEEEEECCCCE
Q 003579 259 LQSVIREAHDNAIISLHFFANEPVLMSASADNSIKMWIFDTTDGDPRLLRFRSGHSAPPLCIRFYANGRHILSAGQDRAF 338 (809)
Q Consensus 259 ~~~~~~~~h~~~V~~l~~~~~~~~l~s~s~d~~i~vw~~~~~~~~~~~~~~~~~h~~~v~~i~~~~~~~~l~s~~~dg~i 338 (809)
.+ .+...+.+..--+--.. .-+ ..+.+++|+........-.......+...+....-.-..........+-.+
T Consensus 112 ~~-----~~~~~~~~~~~~~~~~~-~~g-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~ 184 (993)
T KOG1983|consen 112 GV-----FLKQEITSFVTDPPPDW-LIG-ENGLVKVSDVLRHQLSDLKYAGTESSNFVPYESLSPTLSIEGLVIDLDTVL 184 (993)
T ss_pred ee-----ecCCcceeccCCCCcch-hcc-cCceeeEeeechhhhccceeccccccccceeeeeccceeeeccccccccce
Q ss_pred EEEEeeecccceecchhhHHHHHhhccchhhhhccCceeEEeeccccccccceeEEeecCCceEEEEEeeeeeecceeee
Q 003579 339 RLFSVIQDQQSRELSQRHVAKRARKLKMKEEELKLKPVIAFDCAEIRERDWCNVVTCHMDTAQAYVWRLQNFVLGEHILR 418 (809)
Q Consensus 339 ~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~ 418 (809)
.... ... .
T Consensus 185 ~~~~-----------------------------------------------------------------------~~~-~ 192 (993)
T KOG1983|consen 185 ISLP-----------------------------------------------------------------------DAY-L 192 (993)
T ss_pred eecc-----------------------------------------------------------------------ccc-c
Q ss_pred cCCCCCCCeEEEEEcCCCCEEEEEeCCCcEEEEECCCCceeeeeeCcccccccCccccEEEEEEcCCCCEEEEEeCcCeE
Q 003579 419 PCPENPTAVKACTISACGNFAVLGTAGGWIERFNLQSGISRGSYLDMSERSNYAHNGEVVGVACDSTNTLMISAGYHGDI 498 (809)
Q Consensus 419 ~~~~~~~~v~~v~~s~~g~~l~~g~~~g~i~i~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~l~s~~~dg~i 498 (809)
....+...+.+..+.......+.+ ..+.+.+++.........+. ...... ..++..++++..||.+
T Consensus 193 ~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~--------~~~~~~-----~~~~~~~v~~h~Dgs~ 258 (993)
T KOG1983|consen 193 GLSLIEYESLQVLYYSPTKILIGF-NRGLVVIKDRASKYVQSAYL--------PNGQLE-----SRDGSHFVSYHTDGSY 258 (993)
T ss_pred cccccccccceeeeecCCCcceee-eeeeeeehhcccccchhhcc--------cccccC-----ccCCceEEEEEecCCE
Q ss_pred EEEECCCCceeeeeecCCCeEEEEEe-------------eCCCEEEEEeCCCeEEEEEcCCCeEEEEEecCCCCeeeEEE
Q 003579 499 KVWDFKGRDLKSRWEVGCSLVKIVYH-------------RVNGLLATVADDLVIRLFDVVALRMVRKFEGHTDRITDFCF 565 (809)
Q Consensus 499 ~iwd~~~~~~~~~~~~~~~i~~~~~s-------------~~~~~la~~~~d~~I~v~d~~~~~~~~~~~~h~~~I~~l~f 565 (809)
.+||...++.+.............+- +.+.....+..+...-.+....+-.+.. +-...+.++.+
T Consensus 259 ~fWd~s~g~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~v~~~~--~~~~~~~~~~~ 336 (993)
T KOG1983|consen 259 AFWDVSSGKLQIARNPVPLVSLVPYGPCKQINRILTELPRSGKPFWICQGGMPRGSYGDRHCVSVEH--DGTQVKLDFTS 336 (993)
T ss_pred EeeecCCCceeecCccccccccCCCChhhhhcccccccccccCcEEEecCCCccceecccceeEeec--CCceeEEEEEe
Q ss_pred CCCCCEEEEEeC
Q 003579 566 SEDGKWLLSSGM 577 (809)
Q Consensus 566 spdg~~l~s~s~ 577 (809)
+--+.+.+++.+
T Consensus 337 ~~~~~~~~~~~~ 348 (993)
T KOG1983|consen 337 SVIGLVGVTSED 348 (993)
T ss_pred cccceeeeeccc
No 487
>PF07250 Glyoxal_oxid_N: Glyoxal oxidase N-terminus; InterPro: IPR009880 This entry represents the N terminus (approximately 300 residues) of a number of plant and fungal glyoxal oxidase enzymes. Glyoxal oxidase catalyses the oxidation of aldehydes to carboxylic acids, coupled with reduction of dioxygen to hydrogen peroxide. It is an essential component of the extracellular lignin degradation pathways of the wood-rot fungus Phanerochaete chrysosporium [].
Probab=85.33 E-value=36 Score=33.45 Aligned_cols=145 Identities=15% Similarity=0.167 Sum_probs=77.6
Q ss_pred eEEEEEeeCCeEEEEEeccCCCcEEEEEEecCCCCEEEEEcC-C--CcEEEEECCCc----eeeeeee-cccccceEEEE
Q 003579 204 KIHVHNVRYDEELVTFTHSMRGAVTALAFSSDGQPLLASGAS-S--GVISIWNLEKR----RLQSVIR-EAHDNAIISLH 275 (809)
Q Consensus 204 ~i~iwd~~~~~~~~~~~~~~~~~V~~l~fs~dg~~~lasg~~-d--g~I~iwdl~~~----~~~~~~~-~~h~~~V~~l~ 275 (809)
.-.+||+.+++... +.....--..+=+|.+||+ +|.+|+. + ..+++++..+. ....... ......--+..
T Consensus 47 ~s~~yD~~tn~~rp-l~v~td~FCSgg~~L~dG~-ll~tGG~~~G~~~ir~~~p~~~~~~~~w~e~~~~m~~~RWYpT~~ 124 (243)
T PF07250_consen 47 HSVEYDPNTNTFRP-LTVQTDTFCSGGAFLPDGR-LLQTGGDNDGNKAIRIFTPCTSDGTCDWTESPNDMQSGRWYPTAT 124 (243)
T ss_pred EEEEEecCCCcEEe-ccCCCCCcccCcCCCCCCC-EEEeCCCCccccceEEEecCCCCCCCCceECcccccCCCccccce
Confidence 34689988876432 3322233445556889998 8888873 3 35888886541 1110000 12333444566
Q ss_pred EecCCCEEEEEcCCCc-EEEEEeeCCCCCceeEEeccC-----CCCCCeeEEEecCCCEEEEEECCCCEEEEEeeecccc
Q 003579 276 FFANEPVLMSASADNS-IKMWIFDTTDGDPRLLRFRSG-----HSAPPLCIRFYANGRHILSAGQDRAFRLFSVIQDQQS 349 (809)
Q Consensus 276 ~~~~~~~l~s~s~d~~-i~vw~~~~~~~~~~~~~~~~~-----h~~~v~~i~~~~~~~~l~s~~~dg~i~~wd~~~~~~~ 349 (809)
-.+||+.|+.||.++- ..+|.-.........+..+.. ...---.+...|+|+.++.+..+. .+||..+.+..
T Consensus 125 ~L~DG~vlIvGG~~~~t~E~~P~~~~~~~~~~~~~l~~~~~~~~~nlYP~~~llPdG~lFi~an~~s--~i~d~~~n~v~ 202 (243)
T PF07250_consen 125 TLPDGRVLIVGGSNNPTYEFWPPKGPGPGPVTLPFLSQTSDTLPNNLYPFVHLLPDGNLFIFANRGS--IIYDYKTNTVV 202 (243)
T ss_pred ECCCCCEEEEeCcCCCcccccCCccCCCCceeeecchhhhccCccccCceEEEcCCCCEEEEEcCCc--EEEeCCCCeEE
Confidence 6789999999887743 333321111111111111111 011112455578999998887654 56787776554
Q ss_pred eec
Q 003579 350 REL 352 (809)
Q Consensus 350 ~~~ 352 (809)
+.+
T Consensus 203 ~~l 205 (243)
T PF07250_consen 203 RTL 205 (243)
T ss_pred eeC
Confidence 444
No 488
>PF14781 BBS2_N: Ciliary BBSome complex subunit 2, N-terminal
Probab=84.87 E-value=25 Score=30.53 Aligned_cols=108 Identities=12% Similarity=0.068 Sum_probs=71.0
Q ss_pred EEcCCCCEEEEEeCcCeEEEEECCC--------CceeeeeecCCCeEEEEEee-----CCCEEEEEeCCCeEEEEEcCCC
Q 003579 481 ACDSTNTLMISAGYHGDIKVWDFKG--------RDLKSRWEVGCSLVKIVYHR-----VNGLLATVADDLVIRLFDVVAL 547 (809)
Q Consensus 481 ~~~~~~~~l~s~~~dg~i~iwd~~~--------~~~~~~~~~~~~i~~~~~s~-----~~~~la~~~~d~~I~v~d~~~~ 547 (809)
.|+.....|+.++.-|+|.|++... ...+..+.....|++++-.+ +...|+.|+ ...+..||+...
T Consensus 5 kfDG~~pcL~~aT~~gKV~IH~ph~~~~~~~~~~~~i~~LNin~~italaaG~l~~~~~~D~LliGt-~t~llaYDV~~N 83 (136)
T PF14781_consen 5 KFDGVHPCLACATTGGKVFIHNPHERGQRTGRQDSDISFLNINQEITALAAGRLKPDDGRDCLLIGT-QTSLLAYDVENN 83 (136)
T ss_pred EeCCCceeEEEEecCCEEEEECCCccccccccccCceeEEECCCceEEEEEEecCCCCCcCEEEEec-cceEEEEEcccC
Confidence 4566667788888889999998663 34566777788888887665 244666665 557999999876
Q ss_pred eEEEEEecCCCCeeeEEECC----CCCEEEEEeCCCeEEEEEcCCccE
Q 003579 548 RMVRKFEGHTDRITDFCFSE----DGKWLLSSGMDGSLRIWDVILARQ 591 (809)
Q Consensus 548 ~~~~~~~~h~~~I~~l~fsp----dg~~l~s~s~D~~I~vwd~~~~~~ 591 (809)
.-+..-. -.+.|+++.+-. +..+++ .+.++.|.-||..-.+.
T Consensus 84 ~d~Fyke-~~DGvn~i~~g~~~~~~~~l~i-vGGncsi~Gfd~~G~e~ 129 (136)
T PF14781_consen 84 SDLFYKE-VPDGVNAIVIGKLGDIPSPLVI-VGGNCSIQGFDYEGNEI 129 (136)
T ss_pred chhhhhh-CccceeEEEEEecCCCCCcEEE-ECceEEEEEeCCCCcEE
Confidence 5433222 235677777632 234444 44577888888664443
No 489
>PF11715 Nup160: Nucleoporin Nup120/160; InterPro: IPR021717 Nup120 is conserved from fungi to plants to humans, and is homologous with the Nup160 of vertebrates. The nuclear core complex, or NPC, mediates macromolecular transport across the nuclear envelope. Deletion of the NUP120 gene causes clustering of NPCs at one side of the nuclear envelope, moderate nucleolar fragmentation and slower cell growth []. The vertebrate NPC is estimated to contain between 30 and 60 different proteins. most of which are not known. Two important ones in creating the nucleoporin basket are Nup98 and Nup153, and Nup120, in conjunction with Nup 133, interacts with these two and itself plays a role in mRNA export []. Nup160, Nup133, Nup96, and Nup107 are all targets of phosphorylation. The phosphorylation sites are clustered mainly at the N-terminal regions of these proteins, which are predicted to be natively disordered. The entire Nup107-160 subcomplex is stable throughout the cell cycle, thus it seems unlikely that phosphorylation affects interactions within the Nup107-160 subcomplex, but rather that it regulates the association of the subcomplex with the NPC and other proteins []. ; PDB: 3F7F_D 3H7N_D 3HXR_A.
Probab=84.73 E-value=3.6 Score=46.69 Aligned_cols=71 Identities=17% Similarity=0.238 Sum_probs=44.6
Q ss_pred eCCCEEEEEeCCCeEEEEEcCC----CeEEEE-Ee----------c-----------CCCCeeeEEECC----CCCEEEE
Q 003579 525 RVNGLLATVADDLVIRLFDVVA----LRMVRK-FE----------G-----------HTDRITDFCFSE----DGKWLLS 574 (809)
Q Consensus 525 ~~~~~la~~~~d~~I~v~d~~~----~~~~~~-~~----------~-----------h~~~I~~l~fsp----dg~~l~s 574 (809)
++...++++..||.+....... +..... .. + ..+.+.+++++. +..+|++
T Consensus 156 ~~~~~l~v~~~dG~ll~l~~~~~~~~~~~~~~~~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~t 235 (547)
T PF11715_consen 156 DSEANLVVSLQDGGLLRLKRSSGDSDGSVWSEELFNDSSWLRSLSGLFPWSYRGDNSSSSVAASLAVSSSEINDDTFLFT 235 (547)
T ss_dssp -SSSBEEEEESSS-EEEEEES----SSS-EE----STHHHHHCCTTTS-TT---SSSS---EEEEEE-----ETTTEEEE
T ss_pred cCCCEEEEEECCCCeEEEECCcccCCCCeeEEEEeCCCchhhhhhCcCCcccccCCCCCCccceEEEecceeCCCCEEEE
Confidence 3667777888888887777654 212111 11 0 123456667766 7789999
Q ss_pred EeCCCeEEEEEcCCccEEEEe
Q 003579 575 SGMDGSLRIWDVILARQIDAI 595 (809)
Q Consensus 575 ~s~D~~I~vwd~~~~~~i~~~ 595 (809)
.+.|+++|+||+.+++++...
T Consensus 236 l~~D~~LRiW~l~t~~~~~~~ 256 (547)
T PF11715_consen 236 LSRDHTLRIWSLETGQCLATI 256 (547)
T ss_dssp EETTSEEEEEETTTTCEEEEE
T ss_pred EeCCCeEEEEECCCCeEEEEe
Confidence 999999999999999997655
No 490
>COG5290 IkappaB kinase complex, IKAP component [Transcription]
Probab=84.68 E-value=47 Score=37.69 Aligned_cols=37 Identities=5% Similarity=0.256 Sum_probs=30.4
Q ss_pred cceeeeEecCCcceEEEEcCCeEEEEEEcCCeEEEEE
Q 003579 6 PYKAIGYITSSVPFSVQRLGTENFVTVSVGKAFHIYN 42 (809)
Q Consensus 6 p~r~~g~vs~~v~~~~~~~~~~~~i~~~~~~~i~iwd 42 (809)
|...+|.|+|++..+.+.-+.+.+++...++.|.+.+
T Consensus 104 ~~eivG~v~nGIvaa~wS~DE~~~cvvt~~r~il~~~ 140 (1243)
T COG5290 104 EMEIVGKVSNGIVAASWSADEKTWCVVTSTREILLFD 140 (1243)
T ss_pred hhhhhccccCceEEEeeccCCceEEEEEcCceEEEEe
Confidence 5567899999999888888888788888888887765
No 491
>PF11635 Med16: Mediator complex subunit 16; InterPro: IPR021665 Mediator is a large complex of up to 33 proteins that is conserved from plants through fungi to humans - the number and representation of individual subunits varying with species [],[]. It is arranged into four different sections, a core, a head, a tail and a kinase-activity part, and the number of subunits within each of these is what varies with species. Overall, Mediator regulates the transcriptional activity of RNA polymerase II but it would appear that each of the four different sections has a slightly different function. Med16 is one of the subunits of the Tail portion of the Mediator complex and is required for lipopolysaccharide gene-expression []. Several members including the human protein, Q9Y2X0 from SWISSPROT, have one or more WD40 domains on them, PF00400 from PFAM.
Probab=84.24 E-value=67 Score=37.92 Aligned_cols=68 Identities=19% Similarity=0.166 Sum_probs=52.0
Q ss_pred CCCeEEEEEeeCCCEEEEEeCCCeEEEEEcCCCeEEEEE----e-----------c----CCCCeeeEEECCCCCEEEEE
Q 003579 515 GCSLVKIVYHRVNGLLATVADDLVIRLFDVVALRMVRKF----E-----------G----HTDRITDFCFSEDGKWLLSS 575 (809)
Q Consensus 515 ~~~i~~~~~s~~~~~la~~~~d~~I~v~d~~~~~~~~~~----~-----------~----h~~~I~~l~fspdg~~l~s~ 575 (809)
...|.++....-+.+++.+..||+|.++|..+.+.+... . | +-..+..++|||.+.-++.-
T Consensus 259 ~~~V~si~~~~~~~~v~~~~~DGsI~~~dr~t~~~~~~~~~~~~~~~~v~s~~~~Gf~fp~~~~~~~vafSPt~c~~v~~ 338 (753)
T PF11635_consen 259 NKRVVSITSPELDIVVAFAFSDGSIEFRDRNTMKELNETRTNGEPPNTVTSLFQAGFHFPCIQPPLHVAFSPTMCSLVQI 338 (753)
T ss_pred CCeEEEEEecccCcEEEEEEcCCeEEEEecCcchhhcccccccCCccccccccccccccccCCCCceEEECcccceEEEE
Confidence 366778888888889999999999999999887655443 1 0 11234458899999999998
Q ss_pred eCCCeEE
Q 003579 576 GMDGSLR 582 (809)
Q Consensus 576 s~D~~I~ 582 (809)
..+|.+.
T Consensus 339 ~~~~~~~ 345 (753)
T PF11635_consen 339 DEDGKTK 345 (753)
T ss_pred ecCCCce
Confidence 8888865
No 492
>COG5290 IkappaB kinase complex, IKAP component [Transcription]
Probab=84.03 E-value=71 Score=36.38 Aligned_cols=92 Identities=11% Similarity=0.134 Sum_probs=50.4
Q ss_pred ccEEEEEEcCCCCEEEEEeCcCe-----EEEEECC---CCceeeeeecCCCeEEEEEeeCCCEEEEEeCCCeEEEEEcCC
Q 003579 475 GEVVGVACDSTNTLMISAGYHGD-----IKVWDFK---GRDLKSRWEVGCSLVKIVYHRVNGLLATVADDLVIRLFDVVA 546 (809)
Q Consensus 475 ~~v~~l~~~~~~~~l~s~~~dg~-----i~iwd~~---~~~~~~~~~~~~~i~~~~~s~~~~~la~~~~d~~I~v~d~~~ 546 (809)
+.-..+.|-|+|..+++-+.||. |.++.-+ .|+.-............+|+-....+|++ ....+.+|-..+
T Consensus 247 g~e~~LSWkpqgS~~ati~td~~~~S~~ViFfErNGLrHGef~lr~~~dEk~~~~~wn~~s~vlav~-~~n~~~lwttkN 325 (1243)
T COG5290 247 GMEHQLSWKPQGSKYATIGTDGCSTSESVIFFERNGLRHGEFDLRVGCDEKAFLENWNLLSTVLAVA-EGNLLKLWTTKN 325 (1243)
T ss_pred cchhccccccCCceeeeeccCCCCCcceEEEEccCCcccCCccccCCchhhhhhhhhhHHHHHHHHh-hcceEEEEEccc
Confidence 33445889999999999886653 6666533 22222222333445566676655555554 356788887655
Q ss_pred CeEEEEEecCCCCeeeEEECC
Q 003579 547 LRMVRKFEGHTDRITDFCFSE 567 (809)
Q Consensus 547 ~~~~~~~~~h~~~I~~l~fsp 567 (809)
-.--....-.-..+.-+.|+|
T Consensus 326 yhWYLK~e~~ip~~s~vkwhp 346 (1243)
T COG5290 326 YHWYLKVERQIPGISYVKWHP 346 (1243)
T ss_pred eEEEEEEeecCCCcceeeecc
Confidence 332111111222344455655
No 493
>TIGR03548 mutarot_permut cyclically-permuted mutatrotase family protein. Members of this protein family show essentially full-length homology, cyclically permuted, to YjhT from Escherichia coli. YjhT was shown to act as a mutarotase for sialic acid, and by this ability to be able to act as a virulence factor. Members of the YjhT family (TIGR03547) and this cyclically-permuted family have multiple repeats of the beta-propeller-forming Kelch repeat.
Probab=83.05 E-value=63 Score=33.62 Aligned_cols=107 Identities=7% Similarity=0.004 Sum_probs=54.4
Q ss_pred CCCEEEEEeCC-----CcEEEEECCCCcee---eeeeCcccccccCccccEEEEEEcCCCCEEEEEeC-----cCeEEEE
Q 003579 435 CGNFAVLGTAG-----GWIERFNLQSGISR---GSYLDMSERSNYAHNGEVVGVACDSTNTLMISAGY-----HGDIKVW 501 (809)
Q Consensus 435 ~g~~l~~g~~~-----g~i~i~~~~~~~~~---~~~~~~~~~~~~~h~~~v~~l~~~~~~~~l~s~~~-----dg~i~iw 501 (809)
++...++|+.+ ..+..||+.+..-. ......+ ..... .+++. -++++.+.|+. ...+..|
T Consensus 72 ~~~lyviGG~~~~~~~~~v~~~d~~~~~w~~~~~~~~~lp-----~~~~~-~~~~~-~~~~iYv~GG~~~~~~~~~v~~y 144 (323)
T TIGR03548 72 ENGIYYIGGSNSSERFSSVYRITLDESKEELICETIGNLP-----FTFEN-GSACY-KDGTLYVGGGNRNGKPSNKSYLF 144 (323)
T ss_pred CCEEEEEcCCCCCCCceeEEEEEEcCCceeeeeeEcCCCC-----cCccC-ceEEE-ECCEEEEEeCcCCCccCceEEEE
Confidence 56667777654 35677777665431 1111100 00011 11222 24666666664 2357888
Q ss_pred ECCCCceeeee--ecCCCeEEEEEeeCCCEEEEEeCCC----eEEEEEcCCCe
Q 003579 502 DFKGRDLKSRW--EVGCSLVKIVYHRVNGLLATVADDL----VIRLFDVVALR 548 (809)
Q Consensus 502 d~~~~~~~~~~--~~~~~i~~~~~s~~~~~la~~~~d~----~I~v~d~~~~~ 548 (809)
|..+.+-...- .........+..-++++.+.|+.++ .+.+||..+.+
T Consensus 145 d~~~~~W~~~~~~p~~~r~~~~~~~~~~~iYv~GG~~~~~~~~~~~yd~~~~~ 197 (323)
T TIGR03548 145 NLETQEWFELPDFPGEPRVQPVCVKLQNELYVFGGGSNIAYTDGYKYSPKKNQ 197 (323)
T ss_pred cCCCCCeeECCCCCCCCCCcceEEEECCEEEEEcCCCCccccceEEEecCCCe
Confidence 88766543321 1112222333345677778877653 35688887654
No 494
>smart00036 CNH Domain found in NIK1-like kinases, mouse citron and yeast ROM1, ROM2. Unpublished observations.
Probab=82.81 E-value=61 Score=33.32 Aligned_cols=227 Identities=9% Similarity=0.017 Sum_probs=112.2
Q ss_pred eEEEEEEcCCeEEEEEcCc--cEEEEecCCCCCCcEEEEEeCCeE--EEEECCe--EEEEECCeeE--------------
Q 003579 27 ENFVTVSVGKAFHIYNCAK--LNLVLVGPQLPKKIRALASYRDYT--FAAYGNH--IAVVKRAHQV-------------- 86 (809)
Q Consensus 27 ~~~i~~~~~~~i~iwd~~~--~~~~~~~~~~~~~I~~la~~~~~~--~~a~g~~--i~vw~~~~~~-------------- 86 (809)
.+++.++.+|-+.++ ... ..+.... ...+|++|.+.+... ++-+|.. +++++.....
T Consensus 14 ~~lL~GTe~Gly~~~-~~~~~~~~~kl~--~~~~v~q~~v~~~~~lLi~Lsgk~~~L~~~~L~~L~~~~~~~~~~~~~~~ 90 (302)
T smart00036 14 KWLLVGTEEGLYVLN-ISDQPGTLEKLI--GRRSVTQIWVLEENNVLLMISGKKPQLYSHPLSALVEKKEALGSARLVIR 90 (302)
T ss_pred cEEEEEeCCceEEEE-cccCCCCeEEec--CcCceEEEEEEhhhCEEEEEeCCcceEEEEEHHHhhhhhhccCCcccccc
Confidence 577888777766555 554 3455554 467899999887733 4445666 9999752111
Q ss_pred ---EEEccccccEEEEEE-eCC--EEEEEeCCCcEEEEEcCCCccccceeeeE---E-cCCccccEEEEeCCCCCCEEEE
Q 003579 87 ---ATWSRHSAKVNLLLL-FGE--HILSIDIDGNMFIWAFKGIEENLAPVGHV---K-LDDKFTPTCIMHPDTYLNKVIV 156 (809)
Q Consensus 87 ---~~~~~h~~~V~~l~~-~g~--~l~s~~~dg~i~vWd~~~~~~~~~~~~~~---~-~~~~~~~~~~~~p~~~~~~l~~ 156 (809)
....+|......... .++ ..+.+....+|.++............+.. . ........+..++.....+|.+
T Consensus 91 ~~~~~~~~~tkGc~~~~v~~~~~~~~l~~A~~~~i~l~~~~~~~~~f~~~k~~~~~~~~~~~~~~~~~~~~~~~~~~lcv 170 (302)
T smart00036 91 KNVLTKIPDTKGCHLCAVVNGKRSLFLCVALQSSVVLLQWYNPLKKFKLFKSKFLFPLISPVPVFVELVSSSFERPGICI 170 (302)
T ss_pred ccceEeCCcCCceEEEEEEcCCCcEEEEEEcCCeEEEEEccChhhhhhhhcccccccCCCCccceEeeecccccceEEEE
Confidence 112234333333332 233 22334446667776543331111112211 1 1112222333444432367888
Q ss_pred EeCCCeEEEEeCCC--CceEE-----EEcCCC-CCEEEEEEcCCCCEEEEEeCCCeEEEEEeeCC-eEEEEEeccCCCcE
Q 003579 157 GSQEGSLQLWNIST--KKKLY-----EFKGWG-SSISSCVSSPALDVVAVGCSDGKIHVHNVRYD-EELVTFTHSMRGAV 227 (809)
Q Consensus 157 ~~~dg~i~lwd~~~--~~~~~-----~~~~~~-~~I~~l~~sp~~~~la~g~~dg~i~iwd~~~~-~~~~~~~~~~~~~V 227 (809)
|+..+...++++.. ...-. ...... .++..... +++.+|++ .. ......|.. | +........-.+..
T Consensus 171 G~~~~~~~~~~~~~~~~~~~d~sl~~~~~~~~~~p~~i~~l-~~~e~Llc-~~-~~~v~Vn~~-G~~~~r~~~l~w~~~p 246 (302)
T smart00036 171 GSDKGGGDVVQFHESLVSKEDLSLPFLSEETSLKPISVVQV-PRDEFLLC-YD-EFGVFVNLY-GKRRSRNPILHWEFMP 246 (302)
T ss_pred EEcCCCCeEEEEeecccccccccccccccccccCceEEEEE-CCCeEEEE-EC-cEEEEEeCC-CCccccceEEEcCCcc
Confidence 88763355555532 11000 011111 34434343 34444444 33 344555544 3 22221111124566
Q ss_pred EEEEEecCCCCEEEEEcCCCcEEEEECCCceeeeeee
Q 003579 228 TALAFSSDGQPLLASGASSGVISIWNLEKRRLQSVIR 264 (809)
Q Consensus 228 ~~l~fs~dg~~~lasg~~dg~I~iwdl~~~~~~~~~~ 264 (809)
.++++.. . +|..-. +..|.++++.+++.++.+.
T Consensus 247 ~~~~~~~--p-yll~~~-~~~ievr~l~~~~l~q~i~ 279 (302)
T smart00036 247 ESFAYHS--P-YLLAFH-DNGIEIRSIKTGELLQELA 279 (302)
T ss_pred cEEEEEC--C-EEEEEc-CCcEEEEECCCCceEEEEe
Confidence 7888774 3 444444 4569999999999888886
No 495
>TIGR03547 muta_rot_YjhT mutatrotase, YjhT family. Members of this protein family contain multiple copies of the beta-propeller-forming Kelch repeat. All are full-length homologs to YjhT of Escherichia coli, which has been identified as a mutarotase for sialic acid. This protein improves bacterial ability to obtain host sialic acid, and thus serves as a virulence factor. Some bacteria carry what appears to be a cyclically permuted homolog of this protein.
Probab=82.47 E-value=69 Score=33.69 Aligned_cols=41 Identities=5% Similarity=0.036 Sum_probs=19.8
Q ss_pred CcEEEEECCCceeeeeeecccc-cceEEEEEecCCCEEEEEcC
Q 003579 247 GVISIWNLEKRRLQSVIREAHD-NAIISLHFFANEPVLMSASA 288 (809)
Q Consensus 247 g~I~iwdl~~~~~~~~~~~~h~-~~V~~l~~~~~~~~l~s~s~ 288 (809)
..+.+||..+.+-...-..... ..-.+++ .-++++.+.|+.
T Consensus 168 ~~v~~YDp~t~~W~~~~~~p~~~r~~~~~~-~~~~~iyv~GG~ 209 (346)
T TIGR03547 168 KNVLSYDPSTNQWRNLGENPFLGTAGSAIV-HKGNKLLLINGE 209 (346)
T ss_pred ceEEEEECCCCceeECccCCCCcCCCceEE-EECCEEEEEeee
Confidence 4688899887643322111111 1112222 335667777765
No 496
>PLN02153 epithiospecifier protein
Probab=82.24 E-value=70 Score=33.59 Aligned_cols=238 Identities=9% Similarity=0.045 Sum_probs=0.0
Q ss_pred EEEEEeCCEEEEEeCCC-------cEEEEEcCCCccccceeeeEEcCCccccEEEEeCCCCCCEEEEEeCC-----CeEE
Q 003579 97 NLLLLFGEHILSIDIDG-------NMFIWAFKGIEENLAPVGHVKLDDKFTPTCIMHPDTYLNKVIVGSQE-----GSLQ 164 (809)
Q Consensus 97 ~~l~~~g~~l~s~~~dg-------~i~vWd~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~l~~~~~d-----g~i~ 164 (809)
..+...+...+.|+.+. .+.++|..+.+-...+..............+..-++ +.++.|+.+ ..+.
T Consensus 27 ~~~~~~~~iyv~GG~~~~~~~~~~~~~~yd~~~~~W~~~~~~~~~p~~~~~~~~~~~~~~--~iyv~GG~~~~~~~~~v~ 104 (341)
T PLN02153 27 GIAVVGDKLYSFGGELKPNEHIDKDLYVFDFNTHTWSIAPANGDVPRISCLGVRMVAVGT--KLYIFGGRDEKREFSDFY 104 (341)
T ss_pred eEEEECCEEEEECCccCCCCceeCcEEEEECCCCEEEEcCccCCCCCCccCceEEEEECC--EEEEECCCCCCCccCcEE
Q ss_pred EEeCCCCceEEEEcC-----CCCCEEEEEEcCCCCEEEEEeCC-----------CeEEEEEeeCCe--EEEEEeccCCCc
Q 003579 165 LWNISTKKKLYEFKG-----WGSSISSCVSSPALDVVAVGCSD-----------GKIHVHNVRYDE--ELVTFTHSMRGA 226 (809)
Q Consensus 165 lwd~~~~~~~~~~~~-----~~~~I~~l~~sp~~~~la~g~~d-----------g~i~iwd~~~~~--~~~~~~~~~~~~ 226 (809)
+||.++.+=...-.- ........+..-++++.+.|+.+ ..+.+||.++.+ .+..........
T Consensus 105 ~yd~~t~~W~~~~~~~~~~~p~~R~~~~~~~~~~~iyv~GG~~~~~~~~~~~~~~~v~~yd~~~~~W~~l~~~~~~~~~r 184 (341)
T PLN02153 105 SYDTVKNEWTFLTKLDEEGGPEARTFHSMASDENHVYVFGGVSKGGLMKTPERFRTIEAYNIADGKWVQLPDPGENFEKR 184 (341)
T ss_pred EEECCCCEEEEeccCCCCCCCCCceeeEEEEECCEEEEECCccCCCccCCCcccceEEEEECCCCeEeeCCCCCCCCCCC
Q ss_pred EEEEEEecCCCCEEEEEcCC-------------CcEEEEECCCceeeeeeecc--cccceEEEEEecCCCEEEEEcC---
Q 003579 227 VTALAFSSDGQPLLASGASS-------------GVISIWNLEKRRLQSVIREA--HDNAIISLHFFANEPVLMSASA--- 288 (809)
Q Consensus 227 V~~l~fs~dg~~~lasg~~d-------------g~I~iwdl~~~~~~~~~~~~--h~~~V~~l~~~~~~~~l~s~s~--- 288 (809)
-......-+++ +.+.|+.+ ..+.+||+.+.+-...-..+ ........+..-++.+++.|+.
T Consensus 185 ~~~~~~~~~~~-iyv~GG~~~~~~~gG~~~~~~~~v~~yd~~~~~W~~~~~~g~~P~~r~~~~~~~~~~~iyv~GG~~~~ 263 (341)
T PLN02153 185 GGAGFAVVQGK-IWVVYGFATSILPGGKSDYESNAVQFFDPASGKWTEVETTGAKPSARSVFAHAVVGKYIIIFGGEVWP 263 (341)
T ss_pred CcceEEEECCe-EEEEeccccccccCCccceecCceEEEEcCCCcEEeccccCCCCCCcceeeeEEECCEEEEECcccCC
Q ss_pred -------CCcE--EEEEeeCCCCCceeEE-----eccCCCCCCeeEEEecCCCEEEEEECCCC
Q 003579 289 -------DNSI--KMWIFDTTDGDPRLLR-----FRSGHSAPPLCIRFYANGRHILSAGQDRA 337 (809)
Q Consensus 289 -------d~~i--~vw~~~~~~~~~~~~~-----~~~~h~~~v~~i~~~~~~~~l~s~~~dg~ 337 (809)
.+.+ .+|.++.....+..+. ..........++....+++.++.|+.++.
T Consensus 264 ~~~~~~~~~~~~n~v~~~d~~~~~W~~~~~~~~~~~pr~~~~~~~~~v~~~~~~~~~gG~~~~ 326 (341)
T PLN02153 264 DLKGHLGPGTLSNEGYALDTETLVWEKLGECGEPAMPRGWTAYTTATVYGKNGLLMHGGKLPT 326 (341)
T ss_pred ccccccccccccccEEEEEcCccEEEeccCCCCCCCCCccccccccccCCcceEEEEcCcCCC
No 497
>PRK14131 N-acetylneuraminic acid mutarotase; Provisional
Probab=82.05 E-value=76 Score=33.88 Aligned_cols=240 Identities=10% Similarity=0.052 Sum_probs=0.0
Q ss_pred EEEEEeCCCeEEEEeCCC-CceEEEEcCCC--CCEEEEEEcCCCCEEEEEeCCC-----------eEEEEEeeCCeEEEE
Q 003579 153 KVIVGSQEGSLQLWNIST-KKKLYEFKGWG--SSISSCVSSPALDVVAVGCSDG-----------KIHVHNVRYDEELVT 218 (809)
Q Consensus 153 ~l~~~~~dg~i~lwd~~~-~~~~~~~~~~~--~~I~~l~~sp~~~~la~g~~dg-----------~i~iwd~~~~~~~~~ 218 (809)
+++.|..+..+..+|+.. .+.-..+..-. .........-++.+.+.|+.+. .+..||..+.+-...
T Consensus 42 yv~gG~~~~~~~~~d~~~~~~~W~~l~~~p~~~r~~~~~v~~~~~IYV~GG~~~~~~~~~~~~~~~v~~YD~~~n~W~~~ 121 (376)
T PRK14131 42 YVGLGSAGTSWYKLDLNAPSKGWTKIAAFPGGPREQAVAAFIDGKLYVFGGIGKTNSEGSPQVFDDVYKYDPKTNSWQKL 121 (376)
T ss_pred EEEeCCCCCeEEEEECCCCCCCeEECCcCCCCCcccceEEEECCEEEEEcCCCCCCCCCceeEcccEEEEeCCCCEEEeC
Q ss_pred EeccCCCcEEEEEEe-cCCCCEEEEEcCC---------------------------------------CcEEEEECCCce
Q 003579 219 FTHSMRGAVTALAFS-SDGQPLLASGASS---------------------------------------GVISIWNLEKRR 258 (809)
Q Consensus 219 ~~~~~~~~V~~l~fs-~dg~~~lasg~~d---------------------------------------g~I~iwdl~~~~ 258 (809)
-.......-...+.. -+++ +.+.|+.+ ..+.+||..+.+
T Consensus 122 ~~~~p~~~~~~~~~~~~~~~-IYv~GG~~~~~~~~~~~d~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~v~~YD~~t~~ 200 (376)
T PRK14131 122 DTRSPVGLAGHVAVSLHNGK-AYITGGVNKNIFDGYFEDLAAAGKDKTPKDKINDAYFDKKPEDYFFNKEVLSYDPSTNQ 200 (376)
T ss_pred CCCCCCcccceEEEEeeCCE-EEEECCCCHHHHHHHHhhhhhcccchhhhhhhHHHHhcCChhhcCcCceEEEEECCCCe
Q ss_pred eeeeeecccccceEEEEEecCCCEEEEEc------CCCcEEEEEeeCCCCCceeEEeccC------CCCCCeeEEEecCC
Q 003579 259 LQSVIREAHDNAIISLHFFANEPVLMSAS------ADNSIKMWIFDTTDGDPRLLRFRSG------HSAPPLCIRFYANG 326 (809)
Q Consensus 259 ~~~~~~~~h~~~V~~l~~~~~~~~l~s~s------~d~~i~vw~~~~~~~~~~~~~~~~~------h~~~v~~i~~~~~~ 326 (809)
-...-..............-++++.+.|+ ....+..++++.....+..+..+.. +.......+...++
T Consensus 201 W~~~~~~p~~~~~~~a~v~~~~~iYv~GG~~~~~~~~~~~~~~~~~~~~~~W~~~~~~p~~~~~~~~~~~~~~~a~~~~~ 280 (376)
T PRK14131 201 WKNAGESPFLGTAGSAVVIKGNKLWLINGEIKPGLRTDAVKQGKFTGNNLKWQKLPDLPPAPGGSSQEGVAGAFAGYSNG 280 (376)
T ss_pred eeECCcCCCCCCCcceEEEECCEEEEEeeeECCCcCChhheEEEecCCCcceeecCCCCCCCcCCcCCccceEeceeECC
Q ss_pred CEEEEEECC----------------------CCEEEEEeeecccceecchhhHHHHHhhccchhhhhccCceeEEeeccc
Q 003579 327 RHILSAGQD----------------------RAFRLFSVIQDQQSRELSQRHVAKRARKLKMKEEELKLKPVIAFDCAEI 384 (809)
Q Consensus 327 ~~l~s~~~d----------------------g~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~ 384 (809)
+.++.|+.+ ..+.+||..+++-...-....
T Consensus 281 ~iyv~GG~~~~~~~~~~~~~~~~~~~~~~~~~~~e~yd~~~~~W~~~~~lp~---------------------------- 332 (376)
T PRK14131 281 VLLVAGGANFPGARENYQNGKLYAHEGLKKSWSDEIYALVNGKWQKVGELPQ---------------------------- 332 (376)
T ss_pred EEEEeeccCCCCChhhhhcCCcccccCCcceeehheEEecCCcccccCcCCC----------------------------
Q ss_pred cccccceeEEeecCCceEEEEEeeeeeecceeeecCCCCCCCeEEEEEcCCCCEEEEEeCCC------cEEEEECCCCce
Q 003579 385 RERDWCNVVTCHMDTAQAYVWRLQNFVLGEHILRPCPENPTAVKACTISACGNFAVLGTAGG------WIERFNLQSGIS 458 (809)
Q Consensus 385 ~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~v~~v~~s~~g~~l~~g~~~g------~i~i~~~~~~~~ 458 (809)
......+..-+++.+++|+... .|..++...+..
T Consensus 333 ----------------------------------------~r~~~~av~~~~~iyv~GG~~~~~~~~~~v~~~~~~~~~~ 372 (376)
T PRK14131 333 ----------------------------------------GLAYGVSVSWNNGVLLIGGETAGGKAVSDVTLLSWDGKKL 372 (376)
T ss_pred ----------------------------------------CccceEEEEeCCEEEEEcCCCCCCcEeeeEEEEEEcCCEE
Q ss_pred eee
Q 003579 459 RGS 461 (809)
Q Consensus 459 ~~~ 461 (809)
..+
T Consensus 373 ~~~ 375 (376)
T PRK14131 373 TVE 375 (376)
T ss_pred EEe
No 498
>PF10395 Utp8: Utp8 family; InterPro: IPR018843 Utp8 is an essential component of the nuclear tRNA export machinery in Saccharomyces cerevisiae (Baker's yeast). It is a tRNA binding protein that acts at a step between tRNA maturation /aminoacylation, and translocation of the tRNA across the nuclear pore complex [].
Probab=81.91 E-value=99 Score=35.13 Aligned_cols=111 Identities=20% Similarity=0.357 Sum_probs=71.6
Q ss_pred EEeCCCCCCEEEEEeCCCeEEEEeCC-CCceEEEEcC-CCCCEEEEEEcCC---CCEEEEEeCC-CeEEEEEeeCC----
Q 003579 144 IMHPDTYLNKVIVGSQEGSLQLWNIS-TKKKLYEFKG-WGSSISSCVSSPA---LDVVAVGCSD-GKIHVHNVRYD---- 213 (809)
Q Consensus 144 ~~~p~~~~~~l~~~~~dg~i~lwd~~-~~~~~~~~~~-~~~~I~~l~~sp~---~~~la~g~~d-g~i~iwd~~~~---- 213 (809)
.++|+. +.+-.|=....|.-|=++ |.++++.+.- ....|.||..... ..+.++|-.+ +.-++-.+..+
T Consensus 34 ~~s~~s--n~IdiGIS~S~ISsYIi~PTPKLiwsypi~pt~iV~~~dV~~~~~~~~~~~~glt~rKk~~ll~i~~~~~~~ 111 (670)
T PF10395_consen 34 DFSPDS--NQIDIGISGSAISSYIIKPTPKLIWSYPISPTTIVECCDVLEKSDGKKLYCVGLTERKKFKLLLIERKVGST 111 (670)
T ss_pred ccCCCC--ceEEEEeccchhhheecCCCcceeEeeccCcCceEEEEEeEecCCCcEEEEEEEeeCCeeEEEEEEccCccc
Confidence 366777 777777665566555443 7888888763 3567788876543 2366666444 33455544433
Q ss_pred -------eEEEEEeccCCCcEEEEEEecCCCCEEEEEcCCCcEEEEECCCc
Q 003579 214 -------EELVTFTHSMRGAVTALAFSSDGQPLLASGASSGVISIWNLEKR 257 (809)
Q Consensus 214 -------~~~~~~~~~~~~~V~~l~fs~dg~~~lasg~~dg~I~iwdl~~~ 257 (809)
+...++...-.+.|..+.|.++++ .+++...+|.|.+||...+
T Consensus 112 ~~~~~~~e~~~~~~~kl~~kvv~Ik~~~~~~-~I~vvl~nG~i~~~d~~~~ 161 (670)
T PF10395_consen 112 EDGTVNSETTNEFELKLDDKVVGIKFSSDGK-IIYVVLENGSIQIYDFSEN 161 (670)
T ss_pred cccccCccccceEEEEcccceEEEEEecCCC-EEEEEEcCCcEEEEecccc
Confidence 222222222367899999999988 7777888999999999443
No 499
>smart00036 CNH Domain found in NIK1-like kinases, mouse citron and yeast ROM1, ROM2. Unpublished observations.
Probab=81.26 E-value=69 Score=32.92 Aligned_cols=102 Identities=10% Similarity=0.065 Sum_probs=58.1
Q ss_pred CCEEEEEeCCCeEEEEEeeC--CeEEEEEeccCCCcEEEEEEecCCCCEEEEEcCCCcEEEEECCCcee-----------
Q 003579 193 LDVVAVGCSDGKIHVHNVRY--DEELVTFTHSMRGAVTALAFSSDGQPLLASGASSGVISIWNLEKRRL----------- 259 (809)
Q Consensus 193 ~~~la~g~~dg~i~iwd~~~--~~~~~~~~~~~~~~V~~l~fs~dg~~~lasg~~dg~I~iwdl~~~~~----------- 259 (809)
+++|+.|+.+|...+. +.. ++..+.+. ..+|+++...+.-+-+++.++....++.+++..-..
T Consensus 13 ~~~lL~GTe~Gly~~~-~~~~~~~~~kl~~---~~~v~q~~v~~~~~lLi~Lsgk~~~L~~~~L~~L~~~~~~~~~~~~~ 88 (302)
T smart00036 13 GKWLLVGTEEGLYVLN-ISDQPGTLEKLIG---RRSVTQIWVLEENNVLLMISGKKPQLYSHPLSALVEKKEALGSARLV 88 (302)
T ss_pred CcEEEEEeCCceEEEE-cccCCCCeEEecC---cCceEEEEEEhhhCEEEEEeCCcceEEEEEHHHhhhhhhccCCcccc
Confidence 3689999999965554 543 22333332 568999999988774444555555699999843221
Q ss_pred ---eeeeecccccceEEEEEecCCC-EEEEEcCCCcEEEEEee
Q 003579 260 ---QSVIREAHDNAIISLHFFANEP-VLMSASADNSIKMWIFD 298 (809)
Q Consensus 260 ---~~~~~~~h~~~V~~l~~~~~~~-~l~s~s~d~~i~vw~~~ 298 (809)
......+|..+........+.. .++++....+|.++.+.
T Consensus 89 ~~~~~~~~~~~tkGc~~~~v~~~~~~~~l~~A~~~~i~l~~~~ 131 (302)
T smart00036 89 IRKNVLTKIPDTKGCHLCAVVNGKRSLFLCVALQSSVVLLQWY 131 (302)
T ss_pred ccccceEeCCcCCceEEEEEEcCCCcEEEEEEcCCeEEEEEcc
Confidence 0011224555444444443332 33444455677776443
No 500
>PF03022 MRJP: Major royal jelly protein; InterPro: IPR003534 The major royal jelly proteins (MRJPs) comprise 12.5% of the mass, and 82-90% of the protein content [], of honeybee (Apis mellifera) royal jelly. Royal jelly is a substance secreted by the cephalic glands of nurse bees [] and it is used to trigger development of a queen bee from a bee larva. The biological function of the MRJPs is unknown, but they are believed to play a major role in nutrition due to their high essential amino acid content []. Two royal jelly proteins, MRJP3 and MRJP5, contain a tandem repeat that results from a high genetic variablility. This polymorphism may be useful for genotyping individual bees [].; PDB: 3Q6P_B 3Q6K_A 3Q6T_A 2QE8_B.
Probab=81.22 E-value=67 Score=32.71 Aligned_cols=187 Identities=11% Similarity=0.114 Sum_probs=101.2
Q ss_pred eEEEEEcCCCCEEEEEeC------------CCcEEEEECCCCceeeeeeCcccccccCccccEEEEEEcCCC-----CEE
Q 003579 427 VKACTISACGNFAVLGTA------------GGWIERFNLQSGISRGSYLDMSERSNYAHNGEVVGVACDSTN-----TLM 489 (809)
Q Consensus 427 v~~v~~s~~g~~l~~g~~------------~g~i~i~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~-----~~l 489 (809)
|..+.+.+||+.-++=+. .-.|..||+.+++....+.-..... ...+.+..+.++... .++
T Consensus 3 V~~v~iD~~~rLWVlD~G~~~~~~~~~~~~~pKLv~~Dl~t~~li~~~~~p~~~~--~~~s~lndl~VD~~~~~~~~~~a 80 (287)
T PF03022_consen 3 VQRVQIDECGRLWVLDSGRPNGLQPPKQVCPPKLVAFDLKTNQLIRRYPFPPDIA--PPDSFLNDLVVDVRDGNCDDGFA 80 (287)
T ss_dssp EEEEEE-TTSEEEEEE-CCHSSSSTTGHTS--EEEEEETTTTCEEEEEE--CCCS---TCGGEEEEEEECTTTTS-SEEE
T ss_pred ccEEEEcCCCCEEEEeCCCcCCCCCCCCCCCcEEEEEECCCCcEEEEEECChHHc--ccccccceEEEEccCCCCcceEE
Confidence 455566666665544211 1268899999999887776322211 245678889888732 233
Q ss_pred EEE-eCcCeEEEEECCCCceeeeeec--------------------CCCeEEEEEee---CCCEEEEEeCCC-eEEEEEc
Q 003579 490 ISA-GYHGDIKVWDFKGRDLKSRWEV--------------------GCSLVKIVYHR---VNGLLATVADDL-VIRLFDV 544 (809)
Q Consensus 490 ~s~-~~dg~i~iwd~~~~~~~~~~~~--------------------~~~i~~~~~s~---~~~~la~~~~d~-~I~v~d~ 544 (809)
..+ ...+-|.++|+.+++..+.... ...+..++.+| +++.|....-.+ .++-...
T Consensus 81 YItD~~~~glIV~dl~~~~s~Rv~~~~~~~~p~~~~~~i~g~~~~~~dg~~gial~~~~~d~r~LYf~~lss~~ly~v~T 160 (287)
T PF03022_consen 81 YITDSGGPGLIVYDLATGKSWRVLHNSFSPDPDAGPFTIGGESFQWPDGIFGIALSPISPDGRWLYFHPLSSRKLYRVPT 160 (287)
T ss_dssp EEEETTTCEEEEEETTTTEEEEEETCGCTTS-SSEEEEETTEEEEETTSEEEEEE-TTSTTS-EEEEEETT-SEEEEEEH
T ss_pred EEeCCCcCcEEEEEccCCcEEEEecCCcceeccccceeccCceEecCCCccccccCCCCCCccEEEEEeCCCCcEEEEEH
Confidence 333 3446899999998865544422 23355555555 455555544322 2222221
Q ss_pred C---CC---------eEEEEEecCC-CCeeeEEECCCCCEEEEEeCCCeEEEEEcCCc---cEEEEee-eCc---ceEEE
Q 003579 545 V---AL---------RMVRKFEGHT-DRITDFCFSEDGKWLLSSGMDGSLRIWDVILA---RQIDAIH-VDV---SITAL 604 (809)
Q Consensus 545 ~---~~---------~~~~~~~~h~-~~I~~l~fspdg~~l~s~s~D~~I~vwd~~~~---~~i~~~~-~~~---~v~~l 604 (809)
. .. +.+..+ |.. .....++++++|...++--..+.|..|+..+. +.+..+. -+. -+.++
T Consensus 161 ~~L~~~~~~~~~~~~~~v~~l-G~k~~~s~g~~~D~~G~ly~~~~~~~aI~~w~~~~~~~~~~~~~l~~d~~~l~~pd~~ 239 (287)
T PF03022_consen 161 SVLRDPSLSDAQALASQVQDL-GDKGSQSDGMAIDPNGNLYFTDVEQNAIGCWDPDGPYTPENFEILAQDPRTLQWPDGL 239 (287)
T ss_dssp HHHCSTT--HHH-HHHT-EEE-EE---SECEEEEETTTEEEEEECCCTEEEEEETTTSB-GCCEEEEEE-CC-GSSEEEE
T ss_pred HHhhCccccccccccccceec-cccCCCCceEEECCCCcEEEecCCCCeEEEEeCCCCcCccchheeEEcCceeecccee
Confidence 1 00 112222 222 45677899999998888889999999998751 1222222 222 27888
Q ss_pred EEcC--CCCeEEEE
Q 003579 605 SLSP--NMDVLATA 616 (809)
Q Consensus 605 ~~sp--dg~~lat~ 616 (809)
++.+ +|.+.+.+
T Consensus 240 ~i~~~~~g~L~v~s 253 (287)
T PF03022_consen 240 KIDPEGDGYLWVLS 253 (287)
T ss_dssp EE-T--TS-EEEEE
T ss_pred eeccccCceEEEEE
Confidence 8887 55544443
Done!