Query 003579
Match_columns 809
No_of_seqs 1213 out of 4421
Neff 10.4
Searched_HMMs 29240
Date Tue Mar 26 18:19:31 2013
Command hhsearch -i /local_scratch/syshi/lefta3m/003579.a3m -d /local_scratch/syshi/pdb70.hhm -v 0 -o /local_scratch/syshi/H1_1628-1632//hhsearch_pdb/003579hhsearch_pdb
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 2ymu_A WD-40 repeat protein; u 1.0 1 1 519.2 74.8 563 4-627 7-577 (577)
2 1nr0_A Actin interacting prote 1.0 1 1 515.8 66.1 562 15-629 18-610 (611)
3 3sfz_A APAF-1, apoptotic pepti 1.0 1 1 508.9 60.9 530 50-630 609-1158(1249)
4 3sfz_A APAF-1, apoptotic pepti 1.0 1 1 498.0 61.4 559 23-629 624-1248(1249)
5 2ymu_A WD-40 repeat protein; u 1.0 1 1 481.3 73.0 521 50-629 10-538 (577)
6 1nr0_A Actin interacting prote 1.0 1 1 481.1 60.9 525 55-630 17-567 (611)
7 1pgu_A Actin interacting prote 1.0 1 1 472.9 63.2 537 17-630 24-614 (615)
8 2oaj_A Protein SNI1; WD40 repe 1.0 1 1 445.0 54.8 554 54-631 15-784 (902)
9 1pgu_A Actin interacting prote 1.0 1 1 443.7 58.0 513 53-632 15-574 (615)
10 2oaj_A Protein SNI1; WD40 repe 1.0 1 1 438.9 60.6 605 3-632 5-833 (902)
No 1
>2ymu_A WD-40 repeat protein; unknown function, two domains; 1.79A {Nostoc punctiforme}
Probab=1.00 E-value=1 Score=519.18 Aligned_cols=563 Identities=21% Similarity=0.322 Sum_probs=465.7
Q ss_pred CCCCEEEEEECCCCCEEEEECCCEEEEEEECCCEEEEEECCCCEEEEECCCCCCCCEEEEEECCEEEEEECC---EEEEE
Q ss_conf 543303567318962179971981999998099599997585588995487897718999938837999879---29999
Q 003579 4 FEPYKAIGYITSSVPFSVQRLGTENFVTVSVGKAFHIYNCAKLNLVLVGPQLPKKIRALASYRDYTFAAYGN---HIAVV 80 (809)
Q Consensus 4 ~~p~r~~g~v~~~v~~~~~~~~~~~~i~~~~~~~i~iwd~~~~~~~~~~~~~~~~I~~la~~~~~~~~a~g~---~i~vw 80 (809)
-+..|.-|+ ++.|.-....+++.++++++.|+++++||. +++++....+|...|++++|+|++.++++++ .|++|
T Consensus 7 ~e~~~L~GH-~~~V~~~a~spdg~~las~~~d~~v~iWd~-~~~~~~~l~gh~~~V~~l~fspdg~~las~~~d~~i~vW 84 (577)
T 2ymu_A 7 KERNRLEAH-SSSVRGVAFSPDGQTIASASDDKTVKLWNR-NGQLLQTLTGHSSSVWGVAFSPDGQTIASASDDKTVKLW 84 (577)
T ss_dssp CEEEEECCC-SSCEEEEEECTTSSCEEEEETTSEEEEECT-TSCEEEEEECCSSCEEEEEECTTSSEEEEEETTSCEEEE
T ss_pred EEEEEECCC-CCCEEEEEECCCCCEEEEEECCCEEEEEEC-CCCEEEEEECCCCCEEEEEECCCCCEEEEEECCCEEEEE
T ss_conf 894398789-985799999899899999938998999979-997899996898998999998999999999698979999
Q ss_pred EC-CEEEEEECCCCCCEEEEEE--ECCEEEEEECCCCEEEEECCCCCCCCCEEEEEECCCCCCCEEEEECCCCCCEEEEE
Q ss_conf 77-8368997045452799999--49989999679939999827886553002269738943417999179998899999
Q 003579 81 KR-AHQVATWSRHSAKVNLLLL--FGEHILSIDIDGNMFIWAFKGIEENLAPVGHVKLDDKFTPTCIMHPDTYLNKVIVG 157 (809)
Q Consensus 81 ~~-~~~~~~~~~h~~~V~~i~~--~g~~l~s~~~dg~i~vWd~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~i~~g 157 (809)
+. ++.+..+.+|...|.+++| ++++|++++.|+.+++|+...... .....+...+....++|++ ..++.+
T Consensus 85 d~~~~~~~~~~~~~~~v~~~~~s~d~~~l~~~~~d~~~~~~~~~~~~~-----~~~~~~~~~v~~~~~~~~~--~~~~~~ 157 (577)
T 2ymu_A 85 NRNGQLLQTLTGHSSSVRGVAFSPDGQTIASASDDKTVKLWNRNGQLL-----QTLTGHSSSVWGVAFSPDG--QTIASA 157 (577)
T ss_dssp ETTSCEEEEECCCSSCEEEEEECTTSSEEEEEETTSCEEEEETTCCEE-----EEECCCSSCEEEEEECTTS--SCEEEE
T ss_pred ECCCCEEEEEECCCCCEEEEEECCCCCEEEEECCCCCEEECCCCCCEE-----EECCCCCCCEEEEEEECCC--CCCEEC
T ss_conf 899978999978999889999989999899980798335202355200-----1104777743555420377--632002
Q ss_pred ECCCEEEEEECCCCCEEEEECCCCCCEEEEEECCCCCEEEEEECCCEEEEEEEECCEEEEEEECCCCCCEEEEEEECCCC
Q ss_conf 57780999968999169998289997899998599989999967994999990089079999416997589999801999
Q 003579 158 SQEGSLQLWNISTKKKLYEFKGWGSSISSCVSSPALDVVAVGCSDGKIHVHNVRYDEELVTFTHSMRGAVTALAFSSDGQ 237 (809)
Q Consensus 158 ~~dg~i~iwd~~~~~~~~~~~~~~~~I~~l~~sp~~~~la~g~~dg~i~iwd~~~~~~~~~~~~~~~~~V~~l~fs~dg~ 237 (809)
+.++.+.+|+. ..........|...|.++.++|+++++++++.|+.|++|+. +++.+..+..+ ...|.+++|+|+++
T Consensus 158 ~~~~~~~~~~~-~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~v~~w~~-~~~~~~~~~~~-~~~v~~~~~s~dg~ 234 (577)
T 2ymu_A 158 SDDKTVKLWNR-NGQLLQTLTGHSSSVWGVAFSPDGQTIASASDDKTVKLWNR-NGQLLQTLTGH-SSSVRGVAFSPDGQ 234 (577)
T ss_dssp ETTSEEEEECT-TSCEEEEEECCSSCEEEEEECTTSSCEEEEETTSEEEEECT-TSCEEEEEECC-SSCEEEEEECTTSS
T ss_pred CCCCCEECCCC-CEEEEEECCCCCCCEEEEEECCCCCEEEEECCCCEEEEEEC-CCCEEEEEECC-CCCEEEEEECCCCC
T ss_conf 55531000000-00000002687763566541699778999859998999949-99689999468-89889999979999
Q ss_pred CEEEEECCCCCEEEEECCCCEEEEEEECCCCCCEEEEEEECCCCEEEEECCCCCEEEEEEECCCCCCEEEEECCCCCCCC
Q ss_conf 88999909980999988985022245313346527999945999899981999479999207999950279435889999
Q 003579 238 PLLASGASSGVISIWNLEKRRLQSVIREAHDNAIISLHFFANEPVLMSASADNSIKMWIFDTTDGDPRLLRFRSGHSAPP 317 (809)
Q Consensus 238 ~~lasg~~dg~I~iwdl~~~~~~~~~~~~h~~~v~~l~~~~~~~~l~s~s~d~~i~iw~~~~~~~~~~~~~~~~~h~~~v 317 (809)
++++++.|+.|++||. +++.+..+. +|...|.++.|+|++..+++++.|+.+++|+.+. +.+....+|..++
T Consensus 235 -~l~~~~~d~~i~~w~~-~~~~~~~~~-~~~~~v~~v~~~~d~~~l~~~~~d~~i~~w~~~~-----~~~~~~~~h~~~v 306 (577)
T 2ymu_A 235 -TIASASDDKTVKLWNR-NGQLLQTLT-GHSSSVNGVAFRPDGQTIASASDDKTVKLWNRNG-----QLLQTLTGHSSSV 306 (577)
T ss_dssp -CEEEEETTSCEEEECT-TSCEEEEEC-CCSSCEEEEEECTTSSEEEEEETTSCEEEEETTS-----CEEEEECCCSSCE
T ss_pred -EEEEEECCCEEEEEEC-CCCEEEEEE-CCCCCEEEEEECCCCCEEEEEECCCEEEEEECCC-----CEEEEEECCCCCE
T ss_conf -9999918998999959-997999980-6889879999968999999995999799994899-----5899970688976
Q ss_pred EEEEEECCCCEEEEEECCCCEEEEEEEECCCCEECCHHHHHHHHHHCCCHHHHHCCCCEEEEEECCCCCCCCCEEEEEEC
Q ss_conf 66999039979999978997899996305432120223577987520101433026841277512311466630389642
Q 003579 318 LCIRFYANGRHILSAGQDRAFRLFSVIQDQQSRELSQRHVAKRARKLKMKEEELKLKPVIAFDCAEIRERDWCNVVTCHM 397 (809)
Q Consensus 318 ~~i~~~~~g~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~ 397 (809)
.+++|+|+++.+++++.|+.+++|+...... ..+. ....++.++.++. +.. .+..+.
T Consensus 307 ~~~~~~~~~~~l~t~~~d~~i~~w~~~~~~~-~~~~-----------------~~~~~v~~~~~s~----~g~-~l~~~~ 363 (577)
T 2ymu_A 307 WGVAFSPDGQTIASASDDKTVKLWNRNGQHL-QTLT-----------------GHSSSVWGVAFSP----DGQ-TIASAS 363 (577)
T ss_dssp EEEEECTTSSEEEEEETTSCEEEEETTSCEE-EEEC-----------------CCSSCEEEEEECT----TSS-EEEEEE
T ss_pred EEEEECCCCCEEEEEECCCEEEEEECCCCEE-EEEE-----------------CCCCCEEEEEECC----CCC-EEEEEE
T ss_conf 9999999999999996999599996999725-7874-----------------7889779999989----999-999996
Q ss_pred CCCEEEEEEEEEEEECCEEEECCCCCCCCEEEEEECCCCCEEEEEECCCCEEEEECCCCCEEEEEECCCCCCCCCCCCCE
Q ss_conf 99609999901246321542069999997599999689989999937992999978778300266075522456755647
Q 003579 398 DTAQAYVWRLQNFVLGEHILRPCPENPTAVKACTISACGNFAVLGTAGGWIERFNLQSGISRGSYLDMSERSNYAHNGEV 477 (809)
Q Consensus 398 ~~~~~~~w~~~~~~~~~~~~~~~~~~~~~v~~v~~s~~g~~l~~g~~~g~i~i~~~~~~~~~~~~~~~~~~~~~~h~~~v 477 (809)
.++.+++|+..... +.....|...+++++++|+|+++++++.++.|++|+.. +.....+. +|...|
T Consensus 364 ~dg~v~~~~~~~~~-----~~~~~~~~~~v~~~~~s~dg~~l~~~~~d~~v~~~~~~-~~~~~~~~--------~~~~~v 429 (577)
T 2ymu_A 364 DDKTVKLWNRNGQL-----LQTLTGHSSSVRGVAFSPDGQTIASASDDKTVKLWNRN-GQLLQTLT--------GHSSSV 429 (577)
T ss_dssp TTSEEEEEETTCCE-----EEEEECCSSCEEEEEECTTSSCEEEEETTSEEEEECTT-CCEEEEEE--------CCSSCE
T ss_pred CCCEEEEECCCCCE-----EEEECCCCCCEEEEEECCCCCEEEEEECCCEEEEEECC-CCEEEEEC--------CCCCCE
T ss_conf 99989999089978-----99852788974899998999999999499989999699-97898962--------889975
Q ss_pred EEEEECCCCCEEEEEECCCEEEEEECCCCCEEEEEE-CCCCEEEEEEEECCCEEEEEECCCEEEEEECCCCEEEEEEECC
Q ss_conf 999991899899999576709999779985345344-1877279999207989999949992999995788589997249
Q 003579 478 VGVACDSTNTLMISAGYHGDIKVWDFKGRDLKSRWE-VGCSLVKIVYHRVNGLLATVADDLVIRLFDVVALRMVRKFEGH 556 (809)
Q Consensus 478 ~~i~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~-~~~~i~~~~~s~~~~~la~~~~d~~I~i~d~~~~~~~~~~~~h 556 (809)
++++|+|+++++++++.|+.|++|+... +.+..+. +...+.+++|+|+++++++++.|+.|++||. ++++++.+.+|
T Consensus 430 ~~~~~s~d~~~l~~~~~d~~v~~w~~~~-~~~~~~~~~~~~v~~~~~spd~~~las~~~d~~i~iw~~-~~~~~~~~~~h 507 (577)
T 2ymu_A 430 WGVAFSPDDQTIASASDDKTVKLWNRNG-QLLQTLTGHSSSVRGVAFSPDGQTIASASDDKTVKLWNR-NGQLLQTLTGH 507 (577)
T ss_dssp EEEEECTTSSEEEEEETTSEEEEEETTS-CEEEEEECCSSCEEEEEECTTSCEEEEEETTSEEEEEET-TSCEEEEEECC
T ss_pred EEEEECCCCCEEEEECCCCEEEEEECCC-CEEEEECCCCCCEEEEEECCCCCEEEEEECCCEEEEECC-CCCEEEEEECC
T ss_conf 7999989999999993999899997999-889997278997789999699999999919897999939-99789998679
Q ss_pred CCCEEEEEECCCCCEEEEEECCCEEEEEECCCCCEEEEEEECC-CEEEEEECCCCCEEEEEEECCCEEEEEE
Q ss_conf 9981069987899799999189909999869763788765276-3589997679983899973797499964
Q 003579 557 TDRITDFCFSEDGKWLLSSGMDGSLRIWDVILARQIDAIHVDV-SITALSLSPNMDVLATAHVDQNGVYLWV 627 (809)
Q Consensus 557 ~~~I~~i~fspdg~~l~s~s~Dg~I~iwd~~~~~~i~~~~~~~-~v~~i~~spdg~~lat~~~d~~~i~iW~ 627 (809)
...|++++|+||+++|++++.|+.|++||. +++++..+..|. .|++++|+|||++|++++.|+ .|++|+
T Consensus 508 ~~~v~~l~~s~dg~~l~s~~~dg~v~lwd~-~~~~~~~~~~h~~~v~~~~fs~dg~~l~s~~~D~-~i~~Wd 577 (577)
T 2ymu_A 508 SSSVRGVAFSPDGQTIASASDDKTVKLWNR-NGQLLQTLTGHSSSVWGVAFSPDGQTIASASSDK-TVKLWN 577 (577)
T ss_dssp SSCEEEEEECTTSSCEEEEETTSEEEEECT-TSCEEEEEECCSSCEEEEEECTTSSCEEEEETTS-CEEEEC
T ss_pred CCCEEEEEECCCCCEEEEEECCCEEEEEEC-CCCEEEEECCCCCCEEEEEECCCCCEEEEEECCC-EEEEEC
T ss_conf 999899999189999999989699999969-9978989718888878999968999999990899-999969
No 2
>1nr0_A Actin interacting protein 1; beta propeller, WD40 repeat, ADF, cofilin, structural genomics, PSI, protein structure initiative; 1.70A {Caenorhabditis elegans} SCOP: b.69.4.1 b.69.4.1 PDB: 1pev_A
Probab=1.00 E-value=1 Score=515.84 Aligned_cols=562 Identities=14% Similarity=0.189 Sum_probs=449.3
Q ss_pred CCCCEEEEE-CCCEEEEEEECCCEEEEEECCCCEEEEECCCCCCCCEEEEEECCEEEEEECC---EEEEEECC--E--EE
Q ss_conf 896217997-1981999998099599997585588995487897718999938837999879---29999778--3--68
Q 003579 15 SSVPFSVQR-LGTENFVTVSVGKAFHIYNCAKLNLVLVGPQLPKKIRALASYRDYTFAAYGN---HIAVVKRA--H--QV 86 (809)
Q Consensus 15 ~~v~~~~~~-~~~~~~i~~~~~~~i~iwd~~~~~~~~~~~~~~~~I~~la~~~~~~~~a~g~---~i~vw~~~--~--~~ 86 (809)
.+.++++.. ++++.+++++ ++++++||+.+........+|...|++++|+|++.++|+|+ .|++||.. + ..
T Consensus 18 ~g~~~~~~~spdg~~l~~~~-~~~v~l~~~~~~~~~~~~~~h~~~v~~~~~spdg~~lasg~~d~~v~lWd~~~~~~~~~ 96 (611)
T 1nr0_A 18 RGTAVVLGNTPAGDKIQYCN-GTSVYTVPVGSLTDTEIYTEHSHQTTVAKTSPSGYYCASGDVHGNVRIWDTTQTTHILK 96 (611)
T ss_dssp TTCCCCCEECTTSSEEEEEE-TTEEEEEETTCSSCCEEECCCSSCEEEEEECTTSSEEEEEETTSEEEEEESSSTTCCEE
T ss_pred CCCEEEEEECCCCCEEEECC-CCEEEEECCCCCCCCEEECCCCCCEEEEEECCCCCEEEEEECCCCEEEEECCCCCCEEE
T ss_conf 68236976679999799679-99799945787242737658998659999999996899994899789948989841566
Q ss_pred EEECCCCCCEEEEEE--ECCEEEEEECC----CCEEEEECCCCCCCCCEEEEEECCCCCCCEEEEECCCCCCEEEEEECC
Q ss_conf 997045452799999--49989999679----939999827886553002269738943417999179998899999577
Q 003579 87 ATWSRHSAKVNLLLL--FGEHILSIDID----GNMFIWAFKGIEENLAPVGHVKLDDKFTPTCIMHPDTYLNKVIVGSQE 160 (809)
Q Consensus 87 ~~~~~h~~~V~~i~~--~g~~l~s~~~d----g~i~vWd~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~i~~g~~d 160 (809)
..+.+|.++|.+++| +|++|++++.+ +.|++|| .+.. ...+..|...+..+.|+|++. ..+++++.|
T Consensus 97 ~~~~~~~~~v~~v~fs~dg~~l~~~~~~~~~~~~v~~wd--~~~~----~~~l~gh~~~v~~v~f~p~~~-~~l~s~s~D 169 (611)
T 1nr0_A 97 TTIPVFSGPVKDISWDSESKRIAAVGEGRERFGHVFLFD--TGTS----NGNLTGQARAMNSVDFKPSRP-FRIISGSDD 169 (611)
T ss_dssp EEEECSSSCEEEEEECTTSCEEEEEECCSSCSEEEEETT--TCCB----CBCCCCCSSCEEEEEECSSSS-CEEEEEETT
T ss_pred EEECCCCCCEEEEEECCCCCEEEEEECCCCCEEEEEEEE--CCCC----CCEECCCCCCCEEEEECCCCC-EEEEEEECC
T ss_conf 762255784489998999997999989977366999963--8997----632547889836999889998-299999289
Q ss_pred CEEEEEECCCCCEEEEECCCCCCEEEEEECCCCCEEEEEECCCEEEEEEEECCEEEEEEEC------CCCCCEEEEEEEC
Q ss_conf 8099996899916999828999789999859998999996799499999008907999941------6997589999801
Q 003579 161 GSLQLWNISTKKKLYEFKGWGSSISSCVSSPALDVVAVGCSDGKIHVHNVRYDEELVTFTH------SMRGAVTALAFSS 234 (809)
Q Consensus 161 g~i~iwd~~~~~~~~~~~~~~~~I~~l~~sp~~~~la~g~~dg~i~iwd~~~~~~~~~~~~------~~~~~V~~l~fs~ 234 (809)
++|++||..++++...+.+|...|.+++|+|++++|++++.|+.|++||+.+++.+..+.. .|.+.|.+++|+|
T Consensus 170 ~~v~lwd~~~~~~~~~l~~H~~~V~~v~fspdg~~las~s~D~~i~lwd~~~g~~~~~~~~~~~~~~~h~~~V~~v~~sp 249 (611)
T 1nr0_A 170 NTVAIFEGPPFKFKSTFGEHTKFVHSVRYNPDGSLFASTGGDGTIVLYNGVDGTKTGVFEDDSLKNVAHSGSVFGLTWSP 249 (611)
T ss_dssp SCEEEEETTTBEEEEEECCCSSCEEEEEECTTSSEEEEEETTSCEEEEETTTCCEEEECBCTTSSSCSSSSCEEEEEECT
T ss_pred CEEEEEECCCCEEEEEECCCCCCEEEEEECCCCCEEEEEECCCCEEEEECCCCCEEEEECCCCCCCCCCCCCEEEEEECC
T ss_conf 80999979997576652002571699999799998999989991999889998286651366432356678789999979
Q ss_pred CCCCEEEEECCCCCEEEEECCCCEEEEEEECC--CCCCEEEEEEECCCCEEEEECCCCCEEEEEEECCCCCCEEEEECCC
Q ss_conf 99988999909980999988985022245313--3465279999459998999819994799992079999502794358
Q 003579 235 DGQPLLASGASSGVISIWNLEKRRLQSVIREA--HDNAIISLHFFANEPVLMSASADNSIKMWIFDTTDGDPRLLRFRSG 312 (809)
Q Consensus 235 dg~~~lasg~~dg~I~iwdl~~~~~~~~~~~~--h~~~v~~l~~~~~~~~l~s~s~d~~i~iw~~~~~~~~~~~~~~~~~ 312 (809)
+++ +|++++.|+.|++||+.+++....+..+ +......+.| ++..+++++.|+.+++|+.... .....+.+
T Consensus 250 dg~-~l~s~s~D~~v~lWd~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~l~s~s~d~~i~~~~~~~~----~~~~~~~g 322 (611)
T 1nr0_A 250 DGT-KIASASADKTIKIWNVATLKVEKTIPVGTRIEDQQLGIIW--TKQALVSISANGFINFVNPELG----SIDQVRYG 322 (611)
T ss_dssp TSS-EEEEEETTSEEEEEETTTTEEEEEEECCSSGGGCEEEEEE--CSSCEEEEETTCCEEEEETTTT----EEEEEECC
T ss_pred CCC-EEEEEECCCEEEEEECCCCCEEEEECCCCCCCCEEEEEEE--CCCEEEEEECCCCEEEEECCCC----CCCEEECC
T ss_conf 999-9999908980999968887013440478876640689997--3887999958996899968899----74469837
Q ss_pred CCCCCEEEEEECCCCEEEEEECCCCEEEEEEEECCCCEECCHHHHHHHHHHCCCHHHHHCCCCEEEEEECCCCCCCCCEE
Q ss_conf 89999669990399799999789978999963054321202235779875201014330268412775123114666303
Q 003579 313 HSAPPLCIRFYANGRHILSAGQDRAFRLFSVIQDQQSRELSQRHVAKRARKLKMKEEELKLKPVIAFDCAEIRERDWCNV 392 (809)
Q Consensus 313 h~~~v~~i~~~~~g~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~ 392 (809)
|...|.+++|+|++++|++++.|+.+++|++.++.....+.. .....+.++..+. + ..
T Consensus 323 h~~~v~~l~~spdg~~l~s~s~D~~v~~Wd~~~~~~~~~~~~----------------~h~~~v~~~~~s~----~--~~ 380 (611)
T 1nr0_A 323 HNKAITALSSSADGKTLFSADAEGHINSWDISTGISNRVFPD----------------VHATMITGIKTTS----K--GD 380 (611)
T ss_dssp CSSCEEEEEECTTSSEEEEEETTSCEEEEETTTCCEEECSSC----------------SCSSCEEEEEECT----T--SC
T ss_pred CCCCEEEEEEECCCCEEEEEECCCCEEEEECCCCCEEEECCC----------------CCCCEEEEEEECC----C--CC
T ss_conf 888889999918999899995898499997887925632166----------------7765078999878----9--96
Q ss_pred EEEECCCCEEEEEEEEEEEECCEEEECCCCCCCCEEEEEECCCCCEEEEEECCCCEEEEECCCCCEEEEEECCCCCCCCC
Q ss_conf 89642996099999012463215420699999975999996899899999379929999787783002660755224567
Q 003579 393 VTCHMDTAQAYVWRLQNFVLGEHILRPCPENPTAVKACTISACGNFAVLGTAGGWIERFNLQSGISRGSYLDMSERSNYA 472 (809)
Q Consensus 393 ~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~v~~v~~s~~g~~l~~g~~~g~i~i~~~~~~~~~~~~~~~~~~~~~~ 472 (809)
+.....++.+++|+............ .........+++++++|..++++ .++.+.+|+. +. ...+ .
T Consensus 381 l~s~s~d~~v~~w~~~~~~~~~~~~~-~~~~~~~~~~~~~s~dg~~~~~~-~~~~v~~~~~--~~-~~~~---------~ 446 (611)
T 1nr0_A 381 LFTVSWDDHLKVVPAGGSGVDSSKAV-ANKLSSQPLGLAVSADGDIAVAA-CYKHIAIYSH--GK-LTEV---------P 446 (611)
T ss_dssp EEEEETTTEEEEECSSSSSSCTTSCC-EEECSSCEEEEEECTTSSCEEEE-ESSEEEEEET--TE-EEEE---------E
T ss_pred EEEEECCCCEEEEECCCCCCCCCCEE-EEECCCCCCEEEEECCCCEEEEE-ECCEEEEEEC--CC-EEEE---------E
T ss_conf 99998489668954688543565212-00148997079980799699999-6763999848--94-3464---------0
Q ss_pred CCCCEEEEEECCCCCEEEEEECCCEEEEEECCCCCE--EEEEECCCCEEEEEEEECCCEEEEEECCCEEEEEECCC-CEE
Q ss_conf 556479999918998999995767099997799853--45344187727999920798999994999299999578-858
Q 003579 473 HNGEVVGVACDSTNTLMISAGYHGDIKVWDFKGRDL--KSRWEVGCSLVKIVYHRVNGLLATVADDLVIRLFDVVA-LRM 549 (809)
Q Consensus 473 h~~~v~~i~~~~~~~~l~s~~~dg~i~iwd~~~~~~--~~~~~~~~~i~~~~~s~~~~~la~~~~d~~I~i~d~~~-~~~ 549 (809)
|...+.+++|+|+++++++++.|+.|++|++.++.. .....+...+.+++|+|++++|++++.|+.|++|++.+ +++
T Consensus 447 ~~~~v~~va~spdg~~lasgs~D~~v~lwd~~~~~~~~~~~~~h~~~v~~v~fspdg~~las~s~d~~v~~w~~~~~~~~ 526 (611)
T 1nr0_A 447 ISYNSSCVALSNDKQFVAVGGQDSKVHVYKLSGASVSEVKTIVHPAEITSVAFSNNGAFLVATDQSRKVIPYSVANNFEL 526 (611)
T ss_dssp CSSCEEEEEECTTSCEEEEEETTSEEEEEEEETTEEEEEEEEECSSCEEEEEECTTSSEEEEEETTSCEEEEEGGGTTEE
T ss_pred CCCCCEEEEEECCCCEEEEECCCCEEEEEECCCCCEEEEECCCCCCCEEEEEECCCCCEEEEECCCCCEEEEECCCCCCE
T ss_conf 68895499992899899996899739999945992224101577886079999899998999948998999885778722
Q ss_pred EEE--EECCCCCEEEEEECCCCCEEEEEECCCEEEEEECCCCC-EE-EEEEEC--CCEEEEEECCCCCEEEEEEECCCEE
Q ss_conf 999--72499981069987899799999189909999869763-78-876527--6358999767998389997379749
Q 003579 550 VRK--FEGHTDRITDFCFSEDGKWLLSSGMDGSLRIWDVILAR-QI-DAIHVD--VSITALSLSPNMDVLATAHVDQNGV 623 (809)
Q Consensus 550 ~~~--~~~h~~~I~~i~fspdg~~l~s~s~Dg~I~iwd~~~~~-~i-~~~~~~--~~v~~i~~spdg~~lat~~~d~~~i 623 (809)
... +.+|...|++++|+|||++|++++.|++|++|++.++. .+ ..+..| ..|.+++|+|++. |++++.|+ .|
T Consensus 527 ~~~~~~~~H~~~V~~v~fspdg~~lasgs~D~~v~lW~~~~~~~~~~~~~~~h~~~~v~~v~fs~d~~-l~s~~~D~-~i 604 (611)
T 1nr0_A 527 AHTNSWTFHTAKVACVSWSPDNVRLATGSLDNSVIVWNMNKPSDHPIIIKGAHAMSSVNSVIWLNETT-IVSAGQDS-NI 604 (611)
T ss_dssp SCCCCCCCCSSCEEEEEECTTSSEEEEEETTSCEEEEETTCTTSCCEEETTSSTTSCEEEEEEEETTE-EEEEETTS-CE
T ss_pred EEEEEEEECCCCEEEEEECCCCCEEEEEECCCCEEEEECCCCCCCCCHHHCCCCCCCEEEEEECCCCE-EEEECCCC-CE
T ss_conf 32102640466425899899899799997997299997887555632644467656711899858997-99952887-78
Q ss_pred EEEECC
Q ss_conf 996447
Q 003579 624 YLWVNR 629 (809)
Q Consensus 624 ~iW~~~ 629 (809)
++|++.
T Consensus 605 ~lW~~~ 610 (611)
T 1nr0_A 605 KFWNVP 610 (611)
T ss_dssp EEEECC
T ss_pred EEEECC
T ss_conf 998444
No 3
>3sfz_A APAF-1, apoptotic peptidase activating factor 1; apoptosis, caspase activation, cytochrome C, procaspase-9, A nucleotide, cytosol; HET: ADP; 3.00A {Mus musculus} PDB: 3shf_A* 3iyt_A* 3iza_A*
Probab=1.00 E-value=1 Score=508.85 Aligned_cols=530 Identities=17% Similarity=0.218 Sum_probs=436.4
Q ss_pred EECCCCCCCCEEEEEECCEEEEEECC---EEEEEEC--CEEEEEECCCCCCEEEEEE--ECCEEEEEECCCCEEEEECCC
Q ss_conf 95487897718999938837999879---2999977--8368997045452799999--499899996799399998278
Q 003579 50 LVGPQLPKKIRALASYRDYTFAAYGN---HIAVVKR--AHQVATWSRHSAKVNLLLL--FGEHILSIDIDGNMFIWAFKG 122 (809)
Q Consensus 50 ~~~~~~~~~I~~la~~~~~~~~a~g~---~i~vw~~--~~~~~~~~~h~~~V~~i~~--~g~~l~s~~~dg~i~vWd~~~ 122 (809)
....+|...|++++++|++.++++|+ .|.+|+. ++.+..+.+|...|.++++ +|++|++++.|+.|++||+.+
T Consensus 609 ~~~~~h~~~v~~~~~s~~~~~l~s~~~d~~i~vw~~~~~~~~~~~~~h~~~v~~~~~s~~~~~l~s~~~d~~v~vwd~~~ 688 (1249)
T 3sfz_A 609 LVVRPHTDAVYHACFSQDGQRIASCGADKTLQVFKAETGEKLLDIKAHEDEVLCCAFSSDDSYIATCSADKKVKIWDSAT 688 (1249)
T ss_dssp EEECCCSSCEEEEEECTTSSEEEEEETTSCEEEEETTTCCEEEEECCCSSCEEEEEECTTSSEEEEEETTSEEEEEETTT
T ss_pred EEEECCCCCEEEEEECCCCCEEEEEECCCEEEEEECCCCCEEEEECCCCCCEEEEEEECCCCEEEEEECCCEEEEEECCC
T ss_conf 78716666489999879999899994889499999899978887606777789999926999899981899599987799
Q ss_pred CCCCCCEEEEEECCCCCCCEEEEECCCCCCEEEEEECCCEEEEEECCCCCEEEEECCCCCCEEEEEECCCCCEEEEEECC
Q ss_conf 86553002269738943417999179998899999577809999689991699982899978999985999899999679
Q 003579 123 IEENLAPVGHVKLDDKFTPTCIMHPDTYLNKVIVGSQEGSLQLWNISTKKKLYEFKGWGSSISSCVSSPALDVVAVGCSD 202 (809)
Q Consensus 123 ~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~i~~g~~dg~i~iwd~~~~~~~~~~~~~~~~I~~l~~sp~~~~la~g~~d 202 (809)
++. +..+..+...+..+.|+|++....+++++.||.|++||+.+++++..+.+|...|++++|+|+++++++++.|
T Consensus 689 ~~~----~~~~~~~~~~v~~~~~~~~~~~~~l~sg~~d~~v~vwd~~~~~~~~~~~~h~~~v~~~~~sp~~~~l~s~s~d 764 (1249)
T 3sfz_A 689 GKL----VHTYDEHSEQVNCCHFTNKSNHLLLATGSNDFFLKLWDLNQKECRNTMFGHTNSVNHCRFSPDDELLASCSAD 764 (1249)
T ss_dssp CCE----EEEEECCSSCEEEEEECSSSSCCEEEEEETTSCEEEEETTSSSEEEEECCCSSCEEEEEECSSTTEEEEEESS
T ss_pred CCE----EEEECCCCCCEEEEEEECCCCCEEEEEEECCCEEEEEECCCCCHHHEECCCCCCEEEEEEECCCCEEEEEECC
T ss_conf 936----8999589973799998408996599998089709999899963422012777978899992599989999789
Q ss_pred CEEEEEEEECCEEEEEEECCC------------CCCEEEEEEECCCCCEEEEECCCCCEEEEECCCCEEEEEEECCCCCC
Q ss_conf 949999900890799994169------------97589999801999889999099809999889850222453133465
Q 003579 203 GKIHVHNVRYDEELVTFTHSM------------RGAVTALAFSSDGQPLLASGASSGVISIWNLEKRRLQSVIREAHDNA 270 (809)
Q Consensus 203 g~i~iwd~~~~~~~~~~~~~~------------~~~V~~l~fs~dg~~~lasg~~dg~I~iwdl~~~~~~~~~~~~h~~~ 270 (809)
|.|++||+.+++....+.... ...+.+++|+|+|. .+++++ ++.+.+||+.++.....+..+|...
T Consensus 765 g~v~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~dg~-~l~~~~-~~~v~~~d~~~~~~~~~~~~~~~~~ 842 (1249)
T 3sfz_A 765 GTLRLWDVRSANERKSINVKRFFLSSEDPPEDVEVIVKCCSWSADGD-KIIVAA-KNKVLLFDIHTSGLLAEIHTGHHST 842 (1249)
T ss_dssp SEEEEEEGGGTEEEEEEECCCCC--------CCCCCBCCCCBCTTSS-EEEEEE-TTEEEEEETTTCCEEEEEECSSSSC
T ss_pred CEEEEEECCCCCCCCEECCCCCCCCCCCCCCCCCCEEEEEEECCCCC-EEEEEC-CCCEEEEEECCCCCEEEECCCCCCC
T ss_conf 85999968888655302023210246776445650179999978998-899975-8959999956897235774787776
Q ss_pred EEEEEEECCCCEEEEECCCCCEEEEEEECCCCCCEEEEECCCCCCCCEEEEEECCCCEEEEEECCCCEEEEEEEECCCCE
Q ss_conf 27999945999899981999479999207999950279435889999669990399799999789978999963054321
Q 003579 271 IISLHFFANEPVLMSASADNSIKMWIFDTTDGDPRLLRFRSGHSAPPLCIRFYANGRHILSAGQDRAFRLFSVIQDQQSR 350 (809)
Q Consensus 271 v~~l~~~~~~~~l~s~s~d~~i~iw~~~~~~~~~~~~~~~~~h~~~v~~i~~~~~g~~l~s~~~dg~i~iwd~~~~~~~~ 350 (809)
+.++.|+|++..+++++.|+.+++|+++.. .......+|...|.++.|+|+++.+++++.|+.+++|++.......
T Consensus 843 v~~~~~sp~~~~l~~~~~dg~v~vwd~~~~----~~~~~~~~h~~~v~~v~~spdg~~l~s~s~dg~v~vw~~~~~~~~~ 918 (1249)
T 3sfz_A 843 IQYCDFSPYDHLAVIALSQYCVELWNIDSR----LKVADCRGHLSWVHGVMFSPDGSSFLTASDDQTIRVWETKKVCKNS 918 (1249)
T ss_dssp CCEEEECSSTTEEEEECSSSCEEEEETTTT----EEEEEECCCSSCEEEEEECTTSSEEEEEETTSCEEEEEHHHHHSCC
T ss_pred EEEEEECCCCCEEEEEECCCEEEEEECCCC----CEEEECCCCCCCEEEEEECCCCCEEEEEECCCEEEEEECCCCCEEE
T ss_conf 079998278888999947986999986789----5653227876656899998999989999589728988746652010
Q ss_pred ECCHHHHHHHHHHCCCHHHHHCCCCEEEEEECCCCCCCCCEEEEEECCCCEEEEEEEEEEEECCEEEECCCCCCCCEEEE
Q ss_conf 20223577987520101433026841277512311466630389642996099999012463215420699999975999
Q 003579 351 ELSQRHVAKRARKLKMKEEELKLKPVIAFDCAEIRERDWCNVVTCHMDTAQAYVWRLQNFVLGEHILRPCPENPTAVKAC 430 (809)
Q Consensus 351 ~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~v~~v 430 (809)
..... ....... ......+........+..+......... .....+.++
T Consensus 919 ~~~~~-------------------~~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~~~~~-------~~~~~i~~~ 967 (1249)
T 3sfz_A 919 AIVLK-------------------QEIDVVF-----QENETMVLAVDNIRGLQLIAGKTGQIDY-------LPEAQVSCC 967 (1249)
T ss_dssp SSSEE-------------------EEEEEEE-----ETTEEEEEEEESSSSEEEEEESSCCEEE-------ECCSCEEEE
T ss_pred EECCC-------------------CEEEEEE-----CCCCCEEEEECCCCCEEEEECCCCEEEE-------CCCCCEEEE
T ss_conf 21133-------------------1036897-----5998689981377624898447650897-------256727899
Q ss_pred EECCCCCEEEEEECCCCEEEEECCCCCEEEEEECCCCCCCCCCCCCEEEEEECCCCCEEEEEECCCEEEEEECCCCCEEE
Q ss_conf 99689989999937992999978778300266075522456755647999991899899999576709999779985345
Q 003579 431 TISACGNFAVLGTAGGWIERFNLQSGISRGSYLDMSERSNYAHNGEVVGVACDSTNTLMISAGYHGDIKVWDFKGRDLKS 510 (809)
Q Consensus 431 ~~s~~g~~l~~g~~~g~i~i~~~~~~~~~~~~~~~~~~~~~~h~~~v~~i~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~ 510 (809)
+++|+++++++|+.+|.|.+|++.++.....+. +|...|++++|+|+++++++++.||.|++|++.+++...
T Consensus 968 ~~sp~g~~l~~g~~~g~i~i~d~~~~~~~~~~~--------~h~~~v~~l~~s~dg~~l~s~~~dg~i~vwd~~~~~~~~ 1039 (1249)
T 3sfz_A 968 CLSPHLEYVAFGDEDGAIKIIELPNNRVFSSGV--------GHKKAVRHIQFTADGKTLISSSEDSVIQVWNWQTGDYVF 1039 (1249)
T ss_dssp EECTTSSEEEEEETTSCCEEEETTTTSCEEECC--------CCSSCCCCEEECSSSSCEEEECSSSBEEEEETTTTEEEC
T ss_pred EECCCCCEEEEECCCCCEEEEECCCCCEEEECC--------CCCCCEEEEEECCCCCEEEEECCCCEEEEEECCCCCEEE
T ss_conf 995899779998699988999757872344303--------677716899998999989998699879999879996689
Q ss_pred EEECCCCEEEEEEEECCCEEEEEECCCEEEEEECCCCEEEEEEECCCCCEEEEEECCCCCEEEEEECCCEEEEEECCCCC
Q ss_conf 34418772799992079899999499929999957885899972499981069987899799999189909999869763
Q 003579 511 RWEVGCSLVKIVYHRVNGLLATVADDLVIRLFDVVALRMVRKFEGHTDRITDFCFSEDGKWLLSSGMDGSLRIWDVILAR 590 (809)
Q Consensus 511 ~~~~~~~i~~~~~s~~~~~la~~~~d~~I~i~d~~~~~~~~~~~~h~~~I~~i~fspdg~~l~s~s~Dg~I~iwd~~~~~ 590 (809)
...+...+.++.+++++ .+++++.|+.|++||+.+++....+.+|.+.|++++|+||++++++++.|++|++||+.+++
T Consensus 1040 ~~~~~~~v~~~~~~~~~-~l~~~~~dg~v~vwd~~~~~~~~~~~~~~~~v~~~~~s~d~~~l~s~s~d~~v~iwd~~~~~ 1118 (1249)
T 3sfz_A 1040 LQAHQETVKDFRLLQDS-RLLSWSFDGTVKVWNVITGRIERDFTCHQGTVLSCAISSDATKFSSTSADKTAKIWSFDLLS 1118 (1249)
T ss_dssp CBCCSSCEEEEEECSSS-EEEEEESSSEEEEEETTTTCCCEEEECCSSCCCCEEECSSSSSCEEECCSSCCCEECSSSSS
T ss_pred EECCCCCEEEEEECCCC-CEEEEECCCCEEEEECCCCCEEEEECCCCCCEEEEEECCCCCEEEEECCCCCEEEEECCCCC
T ss_conf 85278738999990899-58999788968998889886558874668848999998999989998499948998789850
Q ss_pred EEEEEEECC-CEEEEEECCCCCEEEEEEECCCEEEEEECCC
Q ss_conf 788765276-3589997679983899973797499964475
Q 003579 591 QIDAIHVDV-SITALSLSPNMDVLATAHVDQNGVYLWVNRC 630 (809)
Q Consensus 591 ~i~~~~~~~-~v~~i~~spdg~~lat~~~d~~~i~iW~~~~ 630 (809)
++..+..|. .|++++|+|+|.+|++++.|+ .|++|+.++
T Consensus 1119 ~~~~l~~h~~~v~~~~~s~dg~~lat~~~dg-~i~vwd~~~ 1158 (1249)
T 3sfz_A 1119 PLHELKGHNGCVRCSAFSLDGILLATGDDNG-EIRIWNVSD 1158 (1249)
T ss_dssp CSBCCCCCSSCEEEEEECSSSSEEEEEETTS-CCCEEESSS
T ss_pred EEEEECCCCCCEEEEEECCCCCEEEEEECCC-EEEEEECCC
T ss_conf 0125506877679999979999899982899-799998899
No 4
>3sfz_A APAF-1, apoptotic peptidase activating factor 1; apoptosis, caspase activation, cytochrome C, procaspase-9, A nucleotide, cytosol; HET: ADP; 3.00A {Mus musculus} PDB: 3shf_A* 3iyt_A* 3iza_A*
Probab=1.00 E-value=1 Score=498.04 Aligned_cols=559 Identities=17% Similarity=0.227 Sum_probs=451.2
Q ss_pred ECCCEEEEEEECCCEEEEEECCCCEEEEECCCCCCCCEEEEEECCEEEEEECC---EEEEEEC--CEEEEEECCCCCCEE
Q ss_conf 71981999998099599997585588995487897718999938837999879---2999977--836899704545279
Q 003579 23 RLGTENFVTVSVGKAFHIYNCAKLNLVLVGPQLPKKIRALASYRDYTFAAYGN---HIAVVKR--AHQVATWSRHSAKVN 97 (809)
Q Consensus 23 ~~~~~~~i~~~~~~~i~iwd~~~~~~~~~~~~~~~~I~~la~~~~~~~~a~g~---~i~vw~~--~~~~~~~~~h~~~V~ 97 (809)
.+++..+++++.|+++++||..++..+....+|...|++++|+|++.++++++ .|.+|+. ++.+..+.+|...|.
T Consensus 624 s~~~~~l~s~~~d~~i~vw~~~~~~~~~~~~~h~~~v~~~~~s~~~~~l~s~~~d~~v~vwd~~~~~~~~~~~~~~~~v~ 703 (1249)
T 3sfz_A 624 SQDGQRIASCGADKTLQVFKAETGEKLLDIKAHEDEVLCCAFSSDDSYIATCSADKKVKIWDSATGKLVHTYDEHSEQVN 703 (1249)
T ss_dssp CTTSSEEEEEETTSCEEEEETTTCCEEEEECCCSSCEEEEEECTTSSEEEEEETTSEEEEEETTTCCEEEEEECCSSCEE
T ss_pred CCCCCEEEEEECCCEEEEEECCCCCEEEEECCCCCCEEEEEEECCCCEEEEEECCCEEEEEECCCCCEEEEECCCCCCEE
T ss_conf 79999899994889499999899978887606777789999926999899981899599987799936899958997379
Q ss_pred EEEEE----CCEEEEEECCCCEEEEECCCCCCCCCEEEEEECCCCCCCEEEEECCCCCCEEEEEECCCEEEEEECCCCCE
Q ss_conf 99994----99899996799399998278865530022697389434179991799988999995778099996899916
Q 003579 98 LLLLF----GEHILSIDIDGNMFIWAFKGIEENLAPVGHVKLDDKFTPTCIMHPDTYLNKVIVGSQEGSLQLWNISTKKK 173 (809)
Q Consensus 98 ~i~~~----g~~l~s~~~dg~i~vWd~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~i~~g~~dg~i~iwd~~~~~~ 173 (809)
++.+. +..+++++.|+.|++||+.+++. ...+..+...+..+.|+|++ +.+++++.||.|++||+.+++.
T Consensus 704 ~~~~~~~~~~~~l~sg~~d~~v~vwd~~~~~~----~~~~~~h~~~v~~~~~sp~~--~~l~s~s~dg~v~vwd~~~~~~ 777 (1249)
T 3sfz_A 704 CCHFTNKSNHLLLATGSNDFFLKLWDLNQKEC----RNTMFGHTNSVNHCRFSPDD--ELLASCSADGTLRLWDVRSANE 777 (1249)
T ss_dssp EEEECSSSSCCEEEEEETTSCEEEEETTSSSE----EEEECCCSSCEEEEEECSST--TEEEEEESSSEEEEEEGGGTEE
T ss_pred EEEEECCCCCEEEEEEECCCEEEEEECCCCCH----HHEECCCCCCEEEEEEECCC--CEEEEEECCCEEEEEECCCCCC
T ss_conf 99984089965999980897099998999634----22012777978899992599--9899997898599996888865
Q ss_pred EEEECC-------------CCCCEEEEEECCCCCEEEEEECCCEEEEEEEECCEEEEEEECCCCCCEEEEEEECCCCCEE
Q ss_conf 999828-------------9997899998599989999967994999990089079999416997589999801999889
Q 003579 174 LYEFKG-------------WGSSISSCVSSPALDVVAVGCSDGKIHVHNVRYDEELVTFTHSMRGAVTALAFSSDGQPLL 240 (809)
Q Consensus 174 ~~~~~~-------------~~~~I~~l~~sp~~~~la~g~~dg~i~iwd~~~~~~~~~~~~~~~~~V~~l~fs~dg~~~l 240 (809)
...+.. ....+.+++|+|+++.+++++ ++.+.+|++.++..+..+...|...+.+++|+|++. ++
T Consensus 778 ~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~dg~~l~~~~-~~~v~~~d~~~~~~~~~~~~~~~~~v~~~~~sp~~~-~l 855 (1249)
T 3sfz_A 778 RKSINVKRFFLSSEDPPEDVEVIVKCCSWSADGDKIIVAA-KNKVLLFDIHTSGLLAEIHTGHHSTIQYCDFSPYDH-LA 855 (1249)
T ss_dssp EEEEECCCCC--------CCCCCBCCCCBCTTSSEEEEEE-TTEEEEEETTTCCEEEEEECSSSSCCCEEEECSSTT-EE
T ss_pred CCEECCCCCCCCCCCCCCCCCCEEEEEEECCCCCEEEEEC-CCCEEEEEECCCCCEEEECCCCCCCEEEEEECCCCC-EE
T ss_conf 5302023210246776445650179999978998899975-895999995689723577478777607999827888-89
Q ss_pred EEECCCCCEEEEECCCCEEEEEEECCCCCCEEEEEEECCCCEEEEECCCCCEEEEEEECCCCCC----------------
Q ss_conf 9990998099998898502224531334652799994599989998199947999920799995----------------
Q 003579 241 ASGASSGVISIWNLEKRRLQSVIREAHDNAIISLHFFANEPVLMSASADNSIKMWIFDTTDGDP---------------- 304 (809)
Q Consensus 241 asg~~dg~I~iwdl~~~~~~~~~~~~h~~~v~~l~~~~~~~~l~s~s~d~~i~iw~~~~~~~~~---------------- 304 (809)
++++.+|.|++||+.++.....+. +|...|.++.|+|++..+++++.|+.+++|++.......
T Consensus 856 ~~~~~dg~v~vwd~~~~~~~~~~~-~h~~~v~~v~~spdg~~l~s~s~dg~v~vw~~~~~~~~~~~~~~~~~~~~~~~~~ 934 (1249)
T 3sfz_A 856 VIALSQYCVELWNIDSRLKVADCR-GHLSWVHGVMFSPDGSSFLTASDDQTIRVWETKKVCKNSAIVLKQEIDVVFQENE 934 (1249)
T ss_dssp EEECSSSCEEEEETTTTEEEEEEC-CCSSCEEEEEECTTSSEEEEEETTSCEEEEEHHHHHSCCSSSEEEEEEEEEETTE
T ss_pred EEEECCCEEEEEECCCCCEEEECC-CCCCCEEEEEECCCCCEEEEEECCCEEEEEECCCCCEEEEECCCCEEEEEECCCC
T ss_conf 999479869999867895653227-8766568999989999899995897289887466520102113310368975998
Q ss_pred ------------EEEE-----ECCCCCCCCEEEEEECCCCEEEEEECCCCEEEEEEEECCCCEECCHHHHHHHHHHCCCH
Q ss_conf ------------0279-----43588999966999039979999978997899996305432120223577987520101
Q 003579 305 ------------RLLR-----FRSGHSAPPLCIRFYANGRHILSAGQDRAFRLFSVIQDQQSRELSQRHVAKRARKLKMK 367 (809)
Q Consensus 305 ------------~~~~-----~~~~h~~~v~~i~~~~~g~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~ 367 (809)
.... ....+...+.+++|+|+++++++++.+|.+++|++..+.....+..
T Consensus 935 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~sp~g~~l~~g~~~g~i~i~d~~~~~~~~~~~~------------- 1001 (1249)
T 3sfz_A 935 TMVLAVDNIRGLQLIAGKTGQIDYLPEAQVSCCCLSPHLEYVAFGDEDGAIKIIELPNNRVFSSGVG------------- 1001 (1249)
T ss_dssp EEEEEEESSSSEEEEEESSCCEEEECCSCEEEEEECTTSSEEEEEETTSCCEEEETTTTSCEEECCC-------------
T ss_pred CEEEEECCCCCEEEEECCCCEEEECCCCCEEEEEECCCCCEEEEECCCCCEEEEECCCCCEEEECCC-------------
T ss_conf 6899813776248984476508972567278999958997799986999889997578723443036-------------
Q ss_pred HHHHCCCCEEEEEECCCCCCCCCEEEEEECCCCEEEEEEEEEEEECCEEEECCCCCCCCEEEEEECCCCCEEEEEECCCC
Q ss_conf 43302684127751231146663038964299609999901246321542069999997599999689989999937992
Q 003579 368 EEELKLKPVIAFDCAEIRERDWCNVVTCHMDTAQAYVWRLQNFVLGEHILRPCPENPTAVKACTISACGNFAVLGTAGGW 447 (809)
Q Consensus 368 ~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~v~~v~~s~~g~~l~~g~~~g~ 447 (809)
...++.++.++. +.. .+.....++.+++|+..+.... ....+...+.++++++++ .+++++.+|.
T Consensus 1002 ----h~~~v~~l~~s~----dg~-~l~s~~~dg~i~vwd~~~~~~~-----~~~~~~~~v~~~~~~~~~-~l~~~~~dg~ 1066 (1249)
T 3sfz_A 1002 ----HKKAVRHIQFTA----DGK-TLISSSEDSVIQVWNWQTGDYV-----FLQAHQETVKDFRLLQDS-RLLSWSFDGT 1066 (1249)
T ss_dssp ----CSSCCCCEEECS----SSS-CEEEECSSSBEEEEETTTTEEE-----CCBCCSSCEEEEEECSSS-EEEEEESSSE
T ss_pred ----CCCCEEEEEECC----CCC-EEEEECCCCEEEEEECCCCCEE-----EEECCCCCEEEEEECCCC-CEEEEECCCC
T ss_conf ----777168999989----999-8999869987999987999668-----985278738999990899-5899978896
Q ss_pred EEEEECCCCCEEEEEECCCCCCCCCCCCCEEEEEECCCCCEEEEEECCCEEEEEECCCCCEEEEEECC-CCEEEEEEEEC
Q ss_conf 99997877830026607552245675564799999189989999957670999977998534534418-77279999207
Q 003579 448 IERFNLQSGISRGSYLDMSERSNYAHNGEVVGVACDSTNTLMISAGYHGDIKVWDFKGRDLKSRWEVG-CSLVKIVYHRV 526 (809)
Q Consensus 448 i~i~~~~~~~~~~~~~~~~~~~~~~h~~~v~~i~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~-~~i~~~~~s~~ 526 (809)
+++|++.++.....+. +|...|.+++|+|+++++++++.||.|++||+.+++....+..+ ..+.+++|+|+
T Consensus 1067 v~vwd~~~~~~~~~~~--------~~~~~v~~~~~s~d~~~l~s~s~d~~v~iwd~~~~~~~~~l~~h~~~v~~~~~s~d 1138 (1249)
T 3sfz_A 1067 VKVWNVITGRIERDFT--------CHQGTVLSCAISSDATKFSSTSADKTAKIWSFDLLSPLHELKGHNGCVRCSAFSLD 1138 (1249)
T ss_dssp EEEEETTTTCCCEEEE--------CCSSCCCCEEECSSSSSCEEECCSSCCCEECSSSSSCSBCCCCCSSCEEEEEECSS
T ss_pred EEEEECCCCCEEEEEC--------CCCCCEEEEEECCCCCEEEEECCCCCEEEEECCCCCEEEEECCCCCCEEEEEECCC
T ss_conf 8998889886558874--------66884899999899998999849994899878985001255068776799999799
Q ss_pred CCEEEEEECCCEEEEEECCCCEEEEEE---------ECCCCCEEEEEECCCCCEEEEEECCCEEEEEECCCCCEEEEEEE
Q ss_conf 989999949992999995788589997---------24999810699878997999991899099998697637887652
Q 003579 527 NGLLATVADDLVIRLFDVVALRMVRKF---------EGHTDRITDFCFSEDGKWLLSSGMDGSLRIWDVILARQIDAIHV 597 (809)
Q Consensus 527 ~~~la~~~~d~~I~i~d~~~~~~~~~~---------~~h~~~I~~i~fspdg~~l~s~s~Dg~I~iwd~~~~~~i~~~~~ 597 (809)
+.++++++.|+.|++||+.+++.+..+ .+|.+.|++++|+|||++|++++ |.|++||+.+++.+..+..
T Consensus 1139 g~~lat~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~v~~l~fs~dg~~l~s~~--g~v~vwd~~~g~~~~~~~~ 1216 (1249)
T 3sfz_A 1139 GILLATGDDNGEIRIWNVSDGQLLHSCAPISVEEGTATHGGWVTDVCFSPDSKTLVSAG--GYLKWWNVATGDSSQTFYT 1216 (1249)
T ss_dssp SSEEEEEETTSCCCEEESSSSCCCCCCCCCC-------CCSCCCEEEECTTSSCEEEES--SSEEEBCSSSCBCCCCCCC
T ss_pred CCEEEEEECCCEEEEEECCCCCEEEEECCCCCCCCCCCCCCEEEEEEECCCCCEEEECC--CEEEEEECCCCCEEEEEEC
T ss_conf 99899982899799998899945788514444421025674289999978999899779--8599989888950046400
Q ss_pred CC-CEEEEEECCCCCEEEEEEECCCEEEEEECC
Q ss_conf 76-358999767998389997379749996447
Q 003579 598 DV-SITALSLSPNMDVLATAHVDQNGVYLWVNR 629 (809)
Q Consensus 598 ~~-~v~~i~~spdg~~lat~~~d~~~i~iW~~~ 629 (809)
+. .+++++|+|+|.+|++++.|| .|++|++-
T Consensus 1217 ~~~~i~~~~~s~dg~~l~~~~~dg-~v~vw~l~ 1248 (1249)
T 3sfz_A 1217 NGTNLKKIHVSPDFRTYVTVDNLG-ILYILQVL 1248 (1249)
T ss_dssp SSCCCCCCEECSSSCCEEEECTTC-CEEEECCC
T ss_pred CCCCCCEEEECCCCCEEEEECCCC-EEEEEEEC
T ss_conf 477532799978987799966881-79997643
No 5
>2ymu_A WD-40 repeat protein; unknown function, two domains; 1.79A {Nostoc punctiforme}
Probab=1.00 E-value=1 Score=481.30 Aligned_cols=521 Identities=21% Similarity=0.331 Sum_probs=437.1
Q ss_pred EECCCCCCCCEEEEEECCEEEEEECCE---EEEEEC-CEEEEEECCCCCCEEEEEE--ECCEEEEEECCCCEEEEECCCC
Q ss_conf 954878977189999388379998792---999977-8368997045452799999--4998999967993999982788
Q 003579 50 LVGPQLPKKIRALASYRDYTFAAYGNH---IAVVKR-AHQVATWSRHSAKVNLLLL--FGEHILSIDIDGNMFIWAFKGI 123 (809)
Q Consensus 50 ~~~~~~~~~I~~la~~~~~~~~a~g~~---i~vw~~-~~~~~~~~~h~~~V~~i~~--~g~~l~s~~~dg~i~vWd~~~~ 123 (809)
....+|...|+|++|+||+.++|+|+. |++|+. ++.+..+.+|...|++++| +|++|++++.|+.|++||.. +
T Consensus 10 ~~L~GH~~~V~~~a~spdg~~las~~~d~~v~iWd~~~~~~~~l~gh~~~V~~l~fspdg~~las~~~d~~i~vWd~~-~ 88 (577)
T 2ymu_A 10 NRLEAHSSSVRGVAFSPDGQTIASASDDKTVKLWNRNGQLLQTLTGHSSSVWGVAFSPDGQTIASASDDKTVKLWNRN-G 88 (577)
T ss_dssp EEECCCSSCEEEEEECTTSSCEEEEETTSEEEEECTTSCEEEEEECCSSCEEEEEECTTSSEEEEEETTSCEEEEETT-S
T ss_pred EEECCCCCCEEEEEECCCCCEEEEEECCCEEEEEECCCCEEEEEECCCCCEEEEEECCCCCEEEEEECCCEEEEEECC-C
T ss_conf 398789985799999899899999938998999979997899996898998999998999999999698979999899-9
Q ss_pred CCCCCEEEEEECCCCCCCEEEEECCCCCCEEEEEECCCEEEEEECCCCCEEEEECCCCCCEEEEEECCCCCEEEEEECCC
Q ss_conf 65530022697389434179991799988999995778099996899916999828999789999859998999996799
Q 003579 124 EENLAPVGHVKLDDKFTPTCIMHPDTYLNKVIVGSQEGSLQLWNISTKKKLYEFKGWGSSISSCVSSPALDVVAVGCSDG 203 (809)
Q Consensus 124 ~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~i~~g~~dg~i~iwd~~~~~~~~~~~~~~~~I~~l~~sp~~~~la~g~~dg 203 (809)
+. +..+..+...+..++|+|++ +.+++++.|+.+++|+.. ........++...+.++.++|++..++.++.++
T Consensus 89 ~~----~~~~~~~~~~v~~~~~s~d~--~~l~~~~~d~~~~~~~~~-~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~ 161 (577)
T 2ymu_A 89 QL----LQTLTGHSSSVRGVAFSPDG--QTIASASDDKTVKLWNRN-GQLLQTLTGHSSSVWGVAFSPDGQTIASASDDK 161 (577)
T ss_dssp CE----EEEECCCSSCEEEEEECTTS--SEEEEEETTSCEEEEETT-CCEEEEECCCSSCEEEEEECTTSSCEEEEETTS
T ss_pred CE----EEEEECCCCCEEEEEECCCC--CEEEEECCCCCEEECCCC-CCEEEECCCCCCCEEEEEEECCCCCCEECCCCC
T ss_conf 78----99997899988999998999--989998079833520235-520011047777435554203776320025553
Q ss_pred EEEEEEEECCEEEEEEECCCCCCEEEEEEECCCCCEEEEECCCCCEEEEECCCCEEEEEEECCCCCCEEEEEEECCCCEE
Q ss_conf 49999900890799994169975899998019998899990998099998898502224531334652799994599989
Q 003579 204 KIHVHNVRYDEELVTFTHSMRGAVTALAFSSDGQPLLASGASSGVISIWNLEKRRLQSVIREAHDNAIISLHFFANEPVL 283 (809)
Q Consensus 204 ~i~iwd~~~~~~~~~~~~~~~~~V~~l~fs~dg~~~lasg~~dg~I~iwdl~~~~~~~~~~~~h~~~v~~l~~~~~~~~l 283 (809)
.+++|+.. .........+ ...|.++.|+|++. ++++++.|+.|++||. +++....+. +|...|.+++|+|++.++
T Consensus 162 ~~~~~~~~-~~~~~~~~~~-~~~v~~~~~~~~~~-~l~~~~~d~~v~~w~~-~~~~~~~~~-~~~~~v~~~~~s~dg~~l 236 (577)
T 2ymu_A 162 TVKLWNRN-GQLLQTLTGH-SSSVWGVAFSPDGQ-TIASASDDKTVKLWNR-NGQLLQTLT-GHSSSVRGVAFSPDGQTI 236 (577)
T ss_dssp EEEEECTT-SCEEEEEECC-SSCEEEEEECTTSS-CEEEEETTSEEEEECT-TSCEEEEEE-CCSSCEEEEEECTTSSCE
T ss_pred CEECCCCC-EEEEEECCCC-CCCEEEEEECCCCC-EEEEECCCCEEEEEEC-CCCEEEEEE-CCCCCEEEEEECCCCCEE
T ss_conf 10000000-0000002687-76356654169977-8999859998999949-996899994-688988999997999999
Q ss_pred EEECCCCCEEEEEEECCCCCCEEEEECCCCCCCCEEEEEECCCCEEEEEECCCCEEEEEEEECCCCEECCHHHHHHHHHH
Q ss_conf 99819994799992079999502794358899996699903997999997899789999630543212022357798752
Q 003579 284 MSASADNSIKMWIFDTTDGDPRLLRFRSGHSAPPLCIRFYANGRHILSAGQDRAFRLFSVIQDQQSRELSQRHVAKRARK 363 (809)
Q Consensus 284 ~s~s~d~~i~iw~~~~~~~~~~~~~~~~~h~~~v~~i~~~~~g~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~ 363 (809)
++++.|+.+++|+.+. +.+..+.+|..++.+++|+|+++.+++++.|+.+++|+... +....+..
T Consensus 237 ~~~~~d~~i~~w~~~~-----~~~~~~~~~~~~v~~v~~~~d~~~l~~~~~d~~i~~w~~~~-~~~~~~~~--------- 301 (577)
T 2ymu_A 237 ASASDDKTVKLWNRNG-----QLLQTLTGHSSSVNGVAFRPDGQTIASASDDKTVKLWNRNG-QLLQTLTG--------- 301 (577)
T ss_dssp EEEETTSCEEEECTTS-----CEEEEECCCSSCEEEEEECTTSSEEEEEETTSCEEEEETTS-CEEEEECC---------
T ss_pred EEEECCCEEEEEECCC-----CEEEEEECCCCCEEEEEECCCCCEEEEEECCCEEEEEECCC-CEEEEEEC---------
T ss_conf 9991899899995999-----79999806889879999968999999995999799994899-58999706---------
Q ss_pred CCCHHHHHCCCCEEEEEECCCCCCCCCEEEEEECCCCEEEEEEEEEEEECCEEEECCCCCCCCEEEEEECCCCCEEEEEE
Q ss_conf 01014330268412775123114666303896429960999990124632154206999999759999968998999993
Q 003579 364 LKMKEEELKLKPVIAFDCAEIRERDWCNVVTCHMDTAQAYVWRLQNFVLGEHILRPCPENPTAVKACTISACGNFAVLGT 443 (809)
Q Consensus 364 ~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~v~~v~~s~~g~~l~~g~ 443 (809)
...++.++.++. +.. .+.....++.+++|+...... .....+...+.+++++|+|+++++|+
T Consensus 302 --------h~~~v~~~~~~~----~~~-~l~t~~~d~~i~~w~~~~~~~-----~~~~~~~~~v~~~~~s~~g~~l~~~~ 363 (577)
T 2ymu_A 302 --------HSSSVWGVAFSP----DGQ-TIASASDDKTVKLWNRNGQHL-----QTLTGHSSSVWGVAFSPDGQTIASAS 363 (577)
T ss_dssp --------CSSCEEEEEECT----TSS-EEEEEETTSCEEEEETTSCEE-----EEECCCSSCEEEEEECTTSSEEEEEE
T ss_pred --------CCCCEEEEEECC----CCC-EEEEEECCCEEEEEECCCCEE-----EEEECCCCCEEEEEECCCCCEEEEEE
T ss_conf --------889769999999----999-999996999599996999725-----78747889779999989999999996
Q ss_pred CCCCEEEEECCCCCEEEEEECCCCCCCCCCCCCEEEEEECCCCCEEEEEECCCEEEEEECCCCCEEEEEE-CCCCEEEEE
Q ss_conf 7992999978778300266075522456755647999991899899999576709999779985345344-187727999
Q 003579 444 AGGWIERFNLQSGISRGSYLDMSERSNYAHNGEVVGVACDSTNTLMISAGYHGDIKVWDFKGRDLKSRWE-VGCSLVKIV 522 (809)
Q Consensus 444 ~~g~i~i~~~~~~~~~~~~~~~~~~~~~~h~~~v~~i~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~-~~~~i~~~~ 522 (809)
.+|.+++|+.. +.....+. +|...|.+++|+|+++++++++.|+.|++|+.. ++.+..+. +...+.+++
T Consensus 364 ~dg~v~~~~~~-~~~~~~~~--------~~~~~v~~~~~s~dg~~l~~~~~d~~v~~~~~~-~~~~~~~~~~~~~v~~~~ 433 (577)
T 2ymu_A 364 DDKTVKLWNRN-GQLLQTLT--------GHSSSVRGVAFSPDGQTIASASDDKTVKLWNRN-GQLLQTLTGHSSSVWGVA 433 (577)
T ss_dssp TTSEEEEEETT-CCEEEEEE--------CCSSCEEEEEECTTSSCEEEEETTSEEEEECTT-CCEEEEEECCSSCEEEEE
T ss_pred CCCEEEEECCC-CCEEEEEC--------CCCCCEEEEEECCCCCEEEEEECCCEEEEEECC-CCEEEEECCCCCCEEEEE
T ss_conf 99989999089-97899852--------788974899998999999999499989999699-978989628899757999
Q ss_pred EEECCCEEEEEECCCEEEEEECCCCEEEEEEECCCCCEEEEEECCCCCEEEEEECCCEEEEEECCCCCEEEEEEECC-CE
Q ss_conf 92079899999499929999957885899972499981069987899799999189909999869763788765276-35
Q 003579 523 YHRVNGLLATVADDLVIRLFDVVALRMVRKFEGHTDRITDFCFSEDGKWLLSSGMDGSLRIWDVILARQIDAIHVDV-SI 601 (809)
Q Consensus 523 ~s~~~~~la~~~~d~~I~i~d~~~~~~~~~~~~h~~~I~~i~fspdg~~l~s~s~Dg~I~iwd~~~~~~i~~~~~~~-~v 601 (809)
|+|++.++++++.|+.|++||. +++.+..+.+|...|++++|+||+++|++++.|+.|++||. +++++..+..|. .|
T Consensus 434 ~s~d~~~l~~~~~d~~v~~w~~-~~~~~~~~~~~~~~v~~~~~spd~~~las~~~d~~i~iw~~-~~~~~~~~~~h~~~v 511 (577)
T 2ymu_A 434 FSPDDQTIASASDDKTVKLWNR-NGQLLQTLTGHSSSVRGVAFSPDGQTIASASDDKTVKLWNR-NGQLLQTLTGHSSSV 511 (577)
T ss_dssp ECTTSSEEEEEETTSEEEEEET-TSCEEEEEECCSSCEEEEEECTTSCEEEEEETTSEEEEEET-TSCEEEEEECCSSCE
T ss_pred ECCCCCEEEEECCCCEEEEEEC-CCCEEEEECCCCCCEEEEEECCCCCEEEEEECCCEEEEECC-CCCEEEEEECCCCCE
T ss_conf 9899999999939998999979-99889997278997789999699999999919897999939-997899986799998
Q ss_pred EEEEECCCCCEEEEEEECCCEEEEEECC
Q ss_conf 8999767998389997379749996447
Q 003579 602 TALSLSPNMDVLATAHVDQNGVYLWVNR 629 (809)
Q Consensus 602 ~~i~~spdg~~lat~~~d~~~i~iW~~~ 629 (809)
++++|+|+|++|++++.|+ .|++|+..
T Consensus 512 ~~l~~s~dg~~l~s~~~dg-~v~lwd~~ 538 (577)
T 2ymu_A 512 RGVAFSPDGQTIASASDDK-TVKLWNRN 538 (577)
T ss_dssp EEEEECTTSSCEEEEETTS-EEEEECTT
T ss_pred EEEEECCCCCEEEEEECCC-EEEEEECC
T ss_conf 9999918999999998969-99999699
No 6
>1nr0_A Actin interacting protein 1; beta propeller, WD40 repeat, ADF, cofilin, structural genomics, PSI, protein structure initiative; 1.70A {Caenorhabditis elegans} SCOP: b.69.4.1 b.69.4.1 PDB: 1pev_A
Probab=1.00 E-value=1 Score=481.07 Aligned_cols=525 Identities=15% Similarity=0.181 Sum_probs=357.7
Q ss_pred CCCCCEEEEEECCEEEEEE--CCEEEEEEC--CEEEEEECCCCCCEEEEEE--ECCEEEEEECCCCEEEEECCCCCCCCC
Q ss_conf 8977189999388379998--792999977--8368997045452799999--499899996799399998278865530
Q 003579 55 LPKKIRALASYRDYTFAAY--GNHIAVVKR--AHQVATWSRHSAKVNLLLL--FGEHILSIDIDGNMFIWAFKGIEENLA 128 (809)
Q Consensus 55 ~~~~I~~la~~~~~~~~a~--g~~i~vw~~--~~~~~~~~~h~~~V~~i~~--~g~~l~s~~~dg~i~vWd~~~~~~~~~ 128 (809)
+.+.+.+++|+|++.++|+ ++.|++|+. ++....+.+|...|+++++ +|++|++++.|++|++||+.+++..
T Consensus 17 ~~g~~~~~~~spdg~~l~~~~~~~v~l~~~~~~~~~~~~~~h~~~v~~~~~spdg~~lasg~~d~~v~lWd~~~~~~~-- 94 (611)
T 1nr0_A 17 ARGTAVVLGNTPAGDKIQYCNGTSVYTVPVGSLTDTEIYTEHSHQTTVAKTSPSGYYCASGDVHGNVRIWDTTQTTHI-- 94 (611)
T ss_dssp CTTCCCCCEECTTSSEEEEEETTEEEEEETTCSSCCEEECCCSSCEEEEEECTTSSEEEEEETTSEEEEEESSSTTCC--
T ss_pred CCCCEEEEEECCCCCEEEECCCCEEEEECCCCCCCCEEECCCCCCEEEEEECCCCCEEEEEECCCCEEEEECCCCCCE--
T ss_conf 068236976679999799679997999457872427376589986599999999968999948997899489898415--
Q ss_pred EEEEEECCCCCCCEEEEECCCCCCEEEEEECC----CEEEEEECCCCCEEEEECCCCCCEEEEEECCCCC-EEEEEECCC
Q ss_conf 02269738943417999179998899999577----8099996899916999828999789999859998-999996799
Q 003579 129 PVGHVKLDDKFTPTCIMHPDTYLNKVIVGSQE----GSLQLWNISTKKKLYEFKGWGSSISSCVSSPALD-VVAVGCSDG 203 (809)
Q Consensus 129 ~~~~~~~~~~~~~~~~~~p~~~~~~i~~g~~d----g~i~iwd~~~~~~~~~~~~~~~~I~~l~~sp~~~-~la~g~~dg 203 (809)
....+..+...+..+.|+|++ +.+++++.+ +.|.+|| .++....+.+|...|.+++|+|++. .+++|+.|+
T Consensus 95 ~~~~~~~~~~~v~~v~fs~dg--~~l~~~~~~~~~~~~v~~wd--~~~~~~~l~gh~~~v~~v~f~p~~~~~l~s~s~D~ 170 (611)
T 1nr0_A 95 LKTTIPVFSGPVKDISWDSES--KRIAAVGEGRERFGHVFLFD--TGTSNGNLTGQARAMNSVDFKPSRPFRIISGSDDN 170 (611)
T ss_dssp EEEEEECSSSCEEEEEECTTS--CEEEEEECCSSCSEEEEETT--TCCBCBCCCCCSSCEEEEEECSSSSCEEEEEETTS
T ss_pred EEEEECCCCCCEEEEEECCCC--CEEEEEECCCCCEEEEEEEE--CCCCCCEECCCCCCCEEEEECCCCCEEEEEEECCC
T ss_conf 667622557844899989999--97999989977366999963--89976325478898369998899982999992898
Q ss_pred EEEEEEEECCEEEEEEECCCCCCEEEEEEECCCCCEEEEECCCCCEEEEECCCCEEEEEEEC------CCCCCEEEEEEE
Q ss_conf 49999900890799994169975899998019998899990998099998898502224531------334652799994
Q 003579 204 KIHVHNVRYDEELVTFTHSMRGAVTALAFSSDGQPLLASGASSGVISIWNLEKRRLQSVIRE------AHDNAIISLHFF 277 (809)
Q Consensus 204 ~i~iwd~~~~~~~~~~~~~~~~~V~~l~fs~dg~~~lasg~~dg~I~iwdl~~~~~~~~~~~------~h~~~v~~l~~~ 277 (809)
.|++||..+++.+..+..| ...|.+++|+|+++ +|++++.|+.|++||+.+++....+.. +|.+.|.+++|+
T Consensus 171 ~v~lwd~~~~~~~~~l~~H-~~~V~~v~fspdg~-~las~s~D~~i~lwd~~~g~~~~~~~~~~~~~~~h~~~V~~v~~s 248 (611)
T 1nr0_A 171 TVAIFEGPPFKFKSTFGEH-TKFVHSVRYNPDGS-LFASTGGDGTIVLYNGVDGTKTGVFEDDSLKNVAHSGSVFGLTWS 248 (611)
T ss_dssp CEEEEETTTBEEEEEECCC-SSCEEEEEECTTSS-EEEEEETTSCEEEEETTTCCEEEECBCTTSSSCSSSSCEEEEEEC
T ss_pred EEEEEECCCCEEEEEECCC-CCCEEEEEECCCCC-EEEEEECCCCEEEEECCCCCEEEEECCCCCCCCCCCCCEEEEEEC
T ss_conf 0999979997576652002-57169999979999-899998999199988999828665136643235667878999997
Q ss_pred CCCCEEEEECCCCCEEEEEEECCCCCCEEEEECCC---CCCCCEEEEEECCCCEEEEEECCCCEEEEEEEECCCCEECCH
Q ss_conf 59998999819994799992079999502794358---899996699903997999997899789999630543212022
Q 003579 278 ANEPVLMSASADNSIKMWIFDTTDGDPRLLRFRSG---HSAPPLCIRFYANGRHILSAGQDRAFRLFSVIQDQQSRELSQ 354 (809)
Q Consensus 278 ~~~~~l~s~s~d~~i~iw~~~~~~~~~~~~~~~~~---h~~~v~~i~~~~~g~~l~s~~~dg~i~iwd~~~~~~~~~~~~ 354 (809)
|++.+|++++.|++|++|++... +.+..+.. +......+.| ++..+++++.|+.+++|+.........+.
T Consensus 249 pdg~~l~s~s~D~~v~lWd~~~~----~~~~~~~~~~~~~~~~~~~~~--~~~~l~s~s~d~~i~~~~~~~~~~~~~~~- 321 (611)
T 1nr0_A 249 PDGTKIASASADKTIKIWNVATL----KVEKTIPVGTRIEDQQLGIIW--TKQALVSISANGFINFVNPELGSIDQVRY- 321 (611)
T ss_dssp TTSSEEEEEETTSEEEEEETTTT----EEEEEEECCSSGGGCEEEEEE--CSSCEEEEETTCCEEEEETTTTEEEEEEC-
T ss_pred CCCCEEEEEECCCEEEEEECCCC----CEEEEECCCCCCCCEEEEEEE--CCCEEEEEECCCCEEEEECCCCCCCEEEC-
T ss_conf 99999999908980999968887----013440478876640689997--38879999589968999688997446983-
Q ss_pred HHHHHHHHHCCCHHHHHCCCCEEEEEECCCCCCCCCEEEEEECCCCEEEEEEEEEEEECCEEEECCCCCCCCEEEEEECC
Q ss_conf 35779875201014330268412775123114666303896429960999990124632154206999999759999968
Q 003579 355 RHVAKRARKLKMKEEELKLKPVIAFDCAEIRERDWCNVVTCHMDTAQAYVWRLQNFVLGEHILRPCPENPTAVKACTISA 434 (809)
Q Consensus 355 ~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~v~~v~~s~ 434 (809)
....++.++.++. +...+ .....++.+++|++....... .....|...+.++++++
T Consensus 322 ----------------gh~~~v~~l~~sp----dg~~l-~s~s~D~~v~~Wd~~~~~~~~---~~~~~h~~~v~~~~~s~ 377 (611)
T 1nr0_A 322 ----------------GHNKAITALSSSA----DGKTL-FSADAEGHINSWDISTGISNR---VFPDVHATMITGIKTTS 377 (611)
T ss_dssp ----------------CCSSCEEEEEECT----TSSEE-EEEETTSCEEEEETTTCCEEE---CSSCSCSSCEEEEEECT
T ss_pred ----------------CCCCCEEEEEEEC----CCCEE-EEEECCCCEEEEECCCCCEEE---ECCCCCCCEEEEEEECC
T ss_conf ----------------7888889999918----99989-999589849999788792563---21667765078999878
Q ss_pred CCCEEEEEECCCCEEEEECCCCCEEEEEECCCCCCCCCCCCCEEEEEECCCCCEEEEEECCCEEEEEECCCCCEEEEEEC
Q ss_conf 99899999379929999787783002660755224567556479999918998999995767099997799853453441
Q 003579 435 CGNFAVLGTAGGWIERFNLQSGISRGSYLDMSERSNYAHNGEVVGVACDSTNTLMISAGYHGDIKVWDFKGRDLKSRWEV 514 (809)
Q Consensus 435 ~g~~l~~g~~~g~i~i~~~~~~~~~~~~~~~~~~~~~~h~~~v~~i~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~ 514 (809)
++ .+++++.++.+++|+...+........ .........+++++|+++.++++ .++.+++|+ .++ ...+.+
T Consensus 378 ~~-~l~s~s~d~~v~~w~~~~~~~~~~~~~-----~~~~~~~~~~~~~s~dg~~~~~~-~~~~v~~~~--~~~-~~~~~~ 447 (611)
T 1nr0_A 378 KG-DLFTVSWDDHLKVVPAGGSGVDSSKAV-----ANKLSSQPLGLAVSADGDIAVAA-CYKHIAIYS--HGK-LTEVPI 447 (611)
T ss_dssp TS-CEEEEETTTEEEEECSSSSSSCTTSCC-----EEECSSCEEEEEECTTSSCEEEE-ESSEEEEEE--TTE-EEEEEC
T ss_pred CC-CEEEEECCCCEEEEECCCCCCCCCCEE-----EEECCCCCCEEEEECCCCEEEEE-ECCEEEEEE--CCC-EEEEEC
T ss_conf 99-699998489668954688543565212-----00148997079980799699999-676399984--894-346406
Q ss_pred CCCEEEEEEEECCCEEEEEECCCEEEEEECCCCEE--EEEEECCCCCEEEEEECCCCCEEEEEECCCEEEEEECCC-CCE
Q ss_conf 87727999920798999994999299999578858--999724999810699878997999991899099998697-637
Q 003579 515 GCSLVKIVYHRVNGLLATVADDLVIRLFDVVALRM--VRKFEGHTDRITDFCFSEDGKWLLSSGMDGSLRIWDVIL-ARQ 591 (809)
Q Consensus 515 ~~~i~~~~~s~~~~~la~~~~d~~I~i~d~~~~~~--~~~~~~h~~~I~~i~fspdg~~l~s~s~Dg~I~iwd~~~-~~~ 591 (809)
...+.+++|+|+++++|+++.|+.|++||+.++.. +.. .+|...|++++|+|||++|++++.|++|++|++.+ +++
T Consensus 448 ~~~v~~va~spdg~~lasgs~D~~v~lwd~~~~~~~~~~~-~~h~~~v~~v~fspdg~~las~s~d~~v~~w~~~~~~~~ 526 (611)
T 1nr0_A 448 SYNSSCVALSNDKQFVAVGGQDSKVHVYKLSGASVSEVKT-IVHPAEITSVAFSNNGAFLVATDQSRKVIPYSVANNFEL 526 (611)
T ss_dssp SSCEEEEEECTTSCEEEEEETTSEEEEEEEETTEEEEEEE-EECSSCEEEEEECTTSSEEEEEETTSCEEEEEGGGTTEE
T ss_pred CCCCEEEEEECCCCEEEEECCCCEEEEEECCCCCEEEEEC-CCCCCCEEEEEECCCCCEEEEECCCCCEEEEECCCCCCE
T ss_conf 8895499992899899996899739999945992224101-577886079999899998999948998999885778722
Q ss_pred EEE--EE-ECCCEEEEEECCCCCEEEEEEECCCEEEEEECCC
Q ss_conf 887--65-2763589997679983899973797499964475
Q 003579 592 IDA--IH-VDVSITALSLSPNMDVLATAHVDQNGVYLWVNRC 630 (809)
Q Consensus 592 i~~--~~-~~~~v~~i~~spdg~~lat~~~d~~~i~iW~~~~ 630 (809)
+.. +. +...|.+++|+|||++||+++.|+ .|++|+...
T Consensus 527 ~~~~~~~~H~~~V~~v~fspdg~~lasgs~D~-~v~lW~~~~ 567 (611)
T 1nr0_A 527 AHTNSWTFHTAKVACVSWSPDNVRLATGSLDN-SVIVWNMNK 567 (611)
T ss_dssp SCCCCCCCCSSCEEEEEECTTSSEEEEEETTS-CEEEEETTC
T ss_pred EEEEEEEECCCCEEEEEECCCCCEEEEEECCC-CEEEEECCC
T ss_conf 32102640466425899899899799997997-299997887
No 7
>1pgu_A Actin interacting protein 1; WD repeat, seven-bladed beta-propeller, protein binding; 2.30A {Saccharomyces cerevisiae} SCOP: b.69.4.1 b.69.4.1 PDB: 1pi6_A
Probab=1.00 E-value=1 Score=472.94 Aligned_cols=537 Identities=14% Similarity=0.146 Sum_probs=457.9
Q ss_pred CCEEEEECCCEEEEEEECCCEEEEEECCCC----EEEEECCCCCCC-CEEEEEEC--CEEEEEECC---EEEEEECC---
Q ss_conf 621799719819999980995999975855----889954878977-18999938--837999879---29999778---
Q 003579 17 VPFSVQRLGTENFVTVSVGKAFHIYNCAKL----NLVLVGPQLPKK-IRALASYR--DYTFAAYGN---HIAVVKRA--- 83 (809)
Q Consensus 17 v~~~~~~~~~~~~i~~~~~~~i~iwd~~~~----~~~~~~~~~~~~-I~~la~~~--~~~~~a~g~---~i~vw~~~--- 83 (809)
+.|+ ++++.+++++ ++.+++||+.++ .......+|... |++++++| ++.++++|. .|++|+..
T Consensus 24 ~~~s---pdg~~l~~~~-~~~v~v~~~~~~~~~~~~~~~~~~h~~~~v~~~~~sp~~~~~~l~s~~~dg~v~vw~~~~~~ 99 (615)
T 1pgu_A 24 LSYD---PTTNAIAYPC-GKSAFVRCLDDGDSKVPPVVQFTGHGSSVVTTVKFSPIKGSQYLCSGDESGKVIVWGWTFDK 99 (615)
T ss_dssp CEEE---TTTTEEEEEE-TTEEEEEECCSSCCSSCSEEEECTTTTSCEEEEEECSSTTCCEEEEEETTSEEEEEEEEEEG
T ss_pred EEEC---CCCCEEEEEC-CCEEEEEECCCCCCCCCCCEEEECCCCCEEEEEEECCCCCCCEEEEECCCCEEEEEECCCCC
T ss_conf 9988---9999799935-98499997778877651431880578844999997967899889996489879997688876
Q ss_pred -------EEEEEECCCCCCEEEEEE--ECCEEEEEECC----CCEEEEECCCCCCCCCEEEEEECCCCCCCEEEEECCCC
Q ss_conf -------368997045452799999--49989999679----93999982788655300226973894341799917999
Q 003579 84 -------HQVATWSRHSAKVNLLLL--FGEHILSIDID----GNMFIWAFKGIEENLAPVGHVKLDDKFTPTCIMHPDTY 150 (809)
Q Consensus 84 -------~~~~~~~~h~~~V~~i~~--~g~~l~s~~~d----g~i~vWd~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~ 150 (809)
+.+..+.+|...|.++.+ ++++|++++.+ +.|.+|+ .++. ...+..+...+..+.|+|++
T Consensus 100 ~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~~~~~~~~v~~~d--~~~~----~~~~~~~~~~v~~~~~~~~~- 172 (615)
T 1pgu_A 100 ESNSVEVNVKSEFQVLAGPISDISWDFEGRRLCVVGEGRDNFGVFISWD--SGNS----LGEVSGHSQRINACHLKQSR- 172 (615)
T ss_dssp GGTEEEEEEEEEEECCSSCEEEEEECTTSSEEEEEECCSSCSEEEEETT--TCCE----EEECCSCSSCEEEEEECSSS-
T ss_pred CCCCCCCCCCCHHHCCCCCEEEEEEECCCCEEEEECCCCCCCCEEEEEE--CCCC----CEEEECCCCCEEEEEECCCC-
T ss_conf 5544554200011125663799999079998999316877755799997--8981----03130677438899988789-
Q ss_pred CC-EEEEEECCCEEEEEECCCCCEEEEECCCCC---CEEEEEECCC-CCEEEEEECCCEEEEEEEECCEEEEEEEC---C
Q ss_conf 88-999995778099996899916999828999---7899998599-98999996799499999008907999941---6
Q 003579 151 LN-KVIVGSQEGSLQLWNISTKKKLYEFKGWGS---SISSCVSSPA-LDVVAVGCSDGKIHVHNVRYDEELVTFTH---S 222 (809)
Q Consensus 151 ~~-~i~~g~~dg~i~iwd~~~~~~~~~~~~~~~---~I~~l~~sp~-~~~la~g~~dg~i~iwd~~~~~~~~~~~~---~ 222 (809)
+ .+++++.|+.|++||..+++.+..+.+|.. .|++++|+|+ ++++++++.||.|++||+.+++.+..+.. .
T Consensus 173 -~~~l~~~~~d~~v~vwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~ 251 (615)
T 1pgu_A 173 -PMRSMTVGDDGSVVFYQGPPFKFSASDRTHHKQGSFVRDVEFSPDSGEFVITVGSDRKISCFDGKSGEFLKYIEDDQEP 251 (615)
T ss_dssp -SCEEEEEETTTEEEEEETTTBEEEEEECSSSCTTCCEEEEEECSTTCCEEEEEETTCCEEEEETTTCCEEEECCBTTBC
T ss_pred -CCEEEEEECCCCEEEEECCCCCEEEEECCCCCCCCEEEEEEECCCCCCEEEEEECCCEEEEEECCCCCEEEEECCCCCC
T ss_conf -9689999579959999699961013202567777428999978977888999868980899989999785895254445
Q ss_pred CCCCEEEEEEECCCCCEEEEECCCCCEEEEECCCCEEEEEEECCC----CCCEEEEEEECCCCEEEEECCCCCEEEEEEE
Q ss_conf 997589999801999889999099809999889850222453133----4652799994599989998199947999920
Q 003579 223 MRGAVTALAFSSDGQPLLASGASSGVISIWNLEKRRLQSVIREAH----DNAIISLHFFANEPVLMSASADNSIKMWIFD 298 (809)
Q Consensus 223 ~~~~V~~l~fs~dg~~~lasg~~dg~I~iwdl~~~~~~~~~~~~h----~~~v~~l~~~~~~~~l~s~s~d~~i~iw~~~ 298 (809)
|...|.+++|+ ++. ++++++.||.|++||+.+++.+..+. .+ ...+.++.|. ++..+++++.|+.+++|++.
T Consensus 252 ~~~~v~~~~~~-~~~-~l~~~~~d~~i~~wd~~~~~~~~~~~-~~~~~~~~~~~~~~~~-~~~~l~~~~~~g~i~~~d~~ 327 (615)
T 1pgu_A 252 VQGGIFALSWL-DSQ-KFATVGADATIRVWDVTTSKCVQKWT-LDKQQLGNQQVGVVAT-GNGRIISLSLDGTLNFYELG 327 (615)
T ss_dssp CCSCEEEEEES-SSS-EEEEEETTSEEEEEETTTTEEEEEEE-CCTTCGGGCEEEEEEE-ETTEEEEEETTSCEEEEETT
T ss_pred CCCCEEEEEEC-CCC-EEEEECCCCCEEEEECCCCCEEEEEC-CCCCCCCCCEEEEEEC-CCCEEEEEECCCCEEEEECC
T ss_conf 67755899981-899-79998489948999788892787884-7877545714699918-99769999789978999888
Q ss_pred CCCCCCEEEEECCCCCCCCEEEEEECCCCEEEEEECCCCEEEEEEEECCCCEECCHHHHHHHHHHCCCHHHHHCCCCEEE
Q ss_conf 79999502794358899996699903997999997899789999630543212022357798752010143302684127
Q 003579 299 TTDGDPRLLRFRSGHSAPPLCIRFYANGRHILSAGQDRAFRLFSVIQDQQSRELSQRHVAKRARKLKMKEEELKLKPVIA 378 (809)
Q Consensus 299 ~~~~~~~~~~~~~~h~~~v~~i~~~~~g~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~ 378 (809)
.. ..+..+.+|..++.+++| |+ +++++.|+.+++|++.. .. .....++.+
T Consensus 328 ~~----~~~~~~~~~~~~v~~~~~-~~---l~~~~~dg~i~~w~~~~---~~-------------------~~~~~~v~~ 377 (615)
T 1pgu_A 328 HD----EVLKTISGHNKGITALTV-NP---LISGSYDGRIMEWSSSS---MH-------------------QDHSNLIVS 377 (615)
T ss_dssp EE----EEEEEECCCSSCEEEEET-TT---TEEEETTSCEEETTTTE---EE-------------------CCCCSCEEE
T ss_pred CC----CEEEEEECCCCCEEEEEE-CC---CEEECCCCEEEEEECHH---HC-------------------CCCCCCEEE
T ss_conf 99----288999477787899995-67---48987999599987524---15-------------------755685179
Q ss_pred EEECCCCCCCCCEEEEEECCCCEEEEEEEEEEEECCEEEECCCCCCCCEEEEEECCCCCEEEEEECCCCEEEEECCCCCE
Q ss_conf 75123114666303896429960999990124632154206999999759999968998999993799299997877830
Q 003579 379 FDCAEIRERDWCNVVTCHMDTAQAYVWRLQNFVLGEHILRPCPENPTAVKACTISACGNFAVLGTAGGWIERFNLQSGIS 458 (809)
Q Consensus 379 ~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~v~~v~~s~~g~~l~~g~~~g~i~i~~~~~~~~ 458 (809)
+... + ...+.....++.+++|+....... ..+.++++++++.+++.+ .++.+.+|+...+..
T Consensus 378 ~~~~-----~-~~~l~~~~~d~~i~~~~~~~~~~~-----------~~~~~~~~s~~~~~~~~~-~~~~~~~~~~~~~~~ 439 (615)
T 1pgu_A 378 LDNS-----K-AQEYSSISWDDTLKVNGITKHEFG-----------SQPKVASANNDGFTAVLT-NDDDLLILQSFTGDI 439 (615)
T ss_dssp EECC-----S-TTCCEEEETTTEEEETTEEEEECS-----------SCEEEEEECSSSEEEEEE-TTSEEEEEETTTCCE
T ss_pred EEEC-----C-CCEEEEEECCCCEEEEECCCCCCC-----------CCCEEEEECCCCCEEEEE-CCCCEEEEECCCCCE
T ss_conf 9978-----9-867999958997999886667636-----------784699982898789996-798269994467866
Q ss_pred EEEEECCCCCCCCCCCCCEEEEEECCCCCEEEEEEC-CCEEEEEECCCCCEE-EEE-ECCCCEEEEEEEECCCEEEEEEC
Q ss_conf 026607552245675564799999189989999957-670999977998534-534-41877279999207989999949
Q 003579 459 RGSYLDMSERSNYAHNGEVVGVACDSTNTLMISAGY-HGDIKVWDFKGRDLK-SRW-EVGCSLVKIVYHRVNGLLATVAD 535 (809)
Q Consensus 459 ~~~~~~~~~~~~~~h~~~v~~i~~~~~~~~l~s~~~-dg~i~iwd~~~~~~~-~~~-~~~~~i~~~~~s~~~~~la~~~~ 535 (809)
...+ .+...+.+++++ ++++++++. |+.|++|++.+++.. ..+ .+...+.+++|+|++.++++++.
T Consensus 440 ~~~~---------~~~~~~~~~~~~--~~~l~~~~~~d~~i~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~~~~ 508 (615)
T 1pgu_A 440 IKSV---------RLNSPGSAVSLS--QNYVAVGLEEGNTIQVFKLSDLEVSFDLKTPLRAKPSYISISPSETYIAAGDV 508 (615)
T ss_dssp EEEE---------ECSSCEEEEEEC--SSEEEEEETTTSCEEEEETTEEEEEEECSSCCSSCEEEEEECTTSSEEEEEET
T ss_pred EEEC---------CCCCCCEEEEEC--CCEEEEEECCCCEEEEEECCCCCCCCCCCCCCCCCEEEEEECCCCCEEEECCC
T ss_conf 5551---------567872077883--88899965689869999888854353336776575079999899998998179
Q ss_pred CCEEEEEECCCCEEEEEEEC-CCCCEEEEEECC----------CCCEEEEEECCCEEEEEECCCC-CEEEEEEECC-CEE
Q ss_conf 99299999578858999724-999810699878----------9979999918990999986976-3788765276-358
Q 003579 536 DLVIRLFDVVALRMVRKFEG-HTDRITDFCFSE----------DGKWLLSSGMDGSLRIWDVILA-RQIDAIHVDV-SIT 602 (809)
Q Consensus 536 d~~I~i~d~~~~~~~~~~~~-h~~~I~~i~fsp----------dg~~l~s~s~Dg~I~iwd~~~~-~~i~~~~~~~-~v~ 602 (809)
|+.|++||+.+++.+..+.+ |...|++++|+| ++++|++++.|+.|++||+.++ +++..+..|. .|+
T Consensus 509 dg~i~iw~~~~~~~~~~~~~~h~~~v~~~~~sp~~~~~~~~~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~h~~~v~ 588 (615)
T 1pgu_A 509 MGKILLYDLQSREVKTSRWAFRTSKINAISWKPAEKGANEEEIEEDLVATGSLDTNIFIYSVKRPMKIIKALNAHKDGVN 588 (615)
T ss_dssp TSCEEEEETTTTEEEECCSCCCSSCEEEEEECCCC------CCSCCEEEEEETTSCEEEEESSCTTCCEEETTSSTTCEE
T ss_pred CCEEEEEECCCCCCEEEEECCCCCCEEEEEECCCCCCCCCCCCCCCEEEEECCCCCEEEEECCCCCEECHHHHCCCCCEE
T ss_conf 98599865777762467604788714699976832345332468888999817971999977888540311335943058
Q ss_pred EEEECCCCCEEEEEEECCCEEEEEECCC
Q ss_conf 9997679983899973797499964475
Q 003579 603 ALSLSPNMDVLATAHVDQNGVYLWVNRC 630 (809)
Q Consensus 603 ~i~~spdg~~lat~~~d~~~i~iW~~~~ 630 (809)
+++|+|++. |++++.|+ .|++|+++.
T Consensus 589 ~l~~s~~~~-l~s~~~d~-~v~iw~~~~ 614 (615)
T 1pgu_A 589 NLLWETPST-LVSSGADA-CIKRWNVVL 614 (615)
T ss_dssp EEEEEETTE-EEEEETTS-CEEEEEEC-
T ss_pred EEEECCCCC-EEEECCCC-EEEEEEEEC
T ss_conf 999738997-28845996-399996015
No 8
>2oaj_A Protein SNI1; WD40 repeat, beta propeller, endocytosis/exocytosis complex; 2.40A {Saccharomyces cerevisiae}
Probab=1.00 E-value=1 Score=445.03 Aligned_cols=554 Identities=12% Similarity=0.075 Sum_probs=367.5
Q ss_pred CCCCCCEEEEEECCEEEEEECC---EEEEEECCEEEEE-ECCCCCCEEEEEEE-CCEEEEEECCCCEEEEECCCCCCCCC
Q ss_conf 7897718999938837999879---2999977836899-70454527999994-99899996799399998278865530
Q 003579 54 QLPKKIRALASYRDYTFAAYGN---HIAVVKRAHQVAT-WSRHSAKVNLLLLF-GEHILSIDIDGNMFIWAFKGIEENLA 128 (809)
Q Consensus 54 ~~~~~I~~la~~~~~~~~a~g~---~i~vw~~~~~~~~-~~~h~~~V~~i~~~-g~~l~s~~~dg~i~vWd~~~~~~~~~ 128 (809)
+|+..|++++|+|++.++|+|. .|++|+....... ...|..+|.+++|. |++|++++.|++|++||+.+++.
T Consensus 15 gh~~~V~~lafspdg~~lAsgs~Dg~I~lw~~~~~~~~~~~~~~~~V~~l~fspg~~L~S~s~D~~v~lWd~~~~~~--- 91 (902)
T 2oaj_A 15 GMSSKPIAAAFDFTQNLLAIATVTGEVHIYGQQQVEVVIKLEDRSAIKEMRFVKGIYLVVINAKDTVYVLSLYSQKV--- 91 (902)
T ss_dssp ECSSCEEEEEEETTTTEEEEEETTSEEEEECSTTCEEEEECSSCCCEEEEEEETTTEEEEEETTCEEEEEETTTCSE---
T ss_pred CCCCCCEEEEECCCCCEEEEEECCCEEEEEECCCCEEEEECCCCCCEEEEEECCCCEEEEEECCCEEEEEECCCCCE---
T ss_conf 88998489999799998999929798999968994799986899977999990898899998959599998999968---
Q ss_pred EEEEEECCCCCCCEEEEECCCCCCEEEEEECCCEEEEEECCCCCEE-----------EEECCCCCCEEEEEECCC-CCEE
Q ss_conf 0226973894341799917999889999957780999968999169-----------998289997899998599-9899
Q 003579 129 PVGHVKLDDKFTPTCIMHPDTYLNKVIVGSQEGSLQLWNISTKKKL-----------YEFKGWGSSISSCVSSPA-LDVV 196 (809)
Q Consensus 129 ~~~~~~~~~~~~~~~~~~p~~~~~~i~~g~~dg~i~iwd~~~~~~~-----------~~~~~~~~~I~~l~~sp~-~~~l 196 (809)
+..+. +...+..+.|+|++ +++++|+.||.|++||++++++. ..+.+|.+.|++++|+|+ +..+
T Consensus 92 -~~~~~-~~~~V~~v~~sp~g--~~l~sgs~dg~V~lwd~~~~~~~~~~i~~~~~~~~~~~~h~~~V~sl~~sp~~~~~l 167 (902)
T 2oaj_A 92 -LTTVF-VPGKITSIDTDASL--DWMLIGLQNGSMIVYDIDRDQLSSFKLDNLQKSSFFPAARLSPIVSIQWNPRDIGTV 167 (902)
T ss_dssp -EEEEE-CSSCEEEEECCTTC--SEEEEEETTSCEEEEETTTTEEEEEEECCHHHHHTCSSSCCCCCCEEEEETTEEEEE
T ss_pred -EEEEC-CCCCEEEEEECCCC--CEEEEECCCCCEEEEECCCCCCCCCEECCCCCCCCCCCCCCCCEEEEEECCCCCCEE
T ss_conf -99974-89987999987999--989999499929999999996265030432100025445789738999766999989
Q ss_pred EEEECCCEEEEEEEECCEEEEEEECC-----------------CCCCEEEEEEECCCCCEEEEECCCCCEEEEECCCCEE
Q ss_conf 99967994999990089079999416-----------------9975899998019998899990998099998898502
Q 003579 197 AVGCSDGKIHVHNVRYDEELVTFTHS-----------------MRGAVTALAFSSDGQPLLASGASSGVISIWNLEKRRL 259 (809)
Q Consensus 197 a~g~~dg~i~iwd~~~~~~~~~~~~~-----------------~~~~V~~l~fs~dg~~~lasg~~dg~I~iwdl~~~~~ 259 (809)
++|+.||.| +||+++++.+..+..+ |...|.+++|+|+|. +|++++.||.|++||+++++.
T Consensus 168 ~~g~~dg~v-lWd~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~h~~~V~~v~fspdg~-~lasgs~Dg~i~lWd~~~g~~ 245 (902)
T 2oaj_A 168 LISYEYVTL-TYSLVENEIKQSFIYELPPFAPGGDFSEKTNEKRTPKVIQSLYHPNSL-HIITIHEDNSLVFWDANSGHM 245 (902)
T ss_dssp EEECSSCEE-EEETTTTEEEEEECCCBCTTCCCSTTCCCTTSCBCCCEEEEEECTTSS-EEEEEETTCCEEEEETTTCCE
T ss_pred EEEECCCCE-EEECCCCCEEEEEECCCCCCCCCCCCCCCCCCCCCCCEEEEEECCCCC-EEEEEECCCEEEEEECCCCCE
T ss_conf 999189849-998778965799833557767776544332345677768999859999-999998999399998789968
Q ss_pred EEE--EE--CC-------------CCCCEEEEEEEC----CC-CEEEEECCC-----CCEEEEEEECCCC----------
Q ss_conf 224--53--13-------------346527999945----99-989998199-----9479999207999----------
Q 003579 260 QSV--IR--EA-------------HDNAIISLHFFA----NE-PVLMSASAD-----NSIKMWIFDTTDG---------- 302 (809)
Q Consensus 260 ~~~--~~--~~-------------h~~~v~~l~~~~----~~-~~l~s~s~d-----~~i~iw~~~~~~~---------- 302 (809)
+.. +. .. |...|.+++|++ ++ .++++++.| +.+++|++.....
T Consensus 246 ~~~r~l~~~~~~~~~~~~~~~~~~~~~~V~~v~w~~~~~pd~~~ll~sg~~~~~~~~~~v~~~~~~~~~~~~~~s~~~~~ 325 (902)
T 2oaj_A 246 IMARTVFETEINVPQPDYIRDSSTNAAKISKVYWMCENNPEYTSLLISHKSISRGDNQSLTMIDLGYTPRYSITSYEGMK 325 (902)
T ss_dssp EEEECSSCSCTTSCCTTCCCCCSSCCCEEEEEEEEECSSTTEEEEEEEEECSTTSSCCCEEEEEEEECCCGGGCCHHHHH
T ss_pred EEEEEECCCCCCCCCCCCCCCCCCCCCCEEEEEEEECCCCCCCEEEEECCCCCCCCCCEEEEEECCCCCCCCCCCHHHHH
T ss_conf 88885012345787776788885556774579997349998878999688777788852899954789875554255654
Q ss_pred ----CCEEEEECC-CCCCCCEEEEEEC----------CCCEEEEEECCCCEEEEEEEECCCCEECCHHHHHHHHHHCCCH
Q ss_conf ----950279435-8899996699903----------9979999978997899996305432120223577987520101
Q 003579 303 ----DPRLLRFRS-GHSAPPLCIRFYA----------NGRHILSAGQDRAFRLFSVIQDQQSRELSQRHVAKRARKLKMK 367 (809)
Q Consensus 303 ----~~~~~~~~~-~h~~~v~~i~~~~----------~g~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~ 367 (809)
.+...+... ++...+..+.+.+ +...+++++.|+.+++|++.++...........
T Consensus 326 ~~~~~~~~~~~~~~~~~~~v~~~~~~~~~sp~~~g~~d~~~l~~~s~dg~l~~~~~~~g~~~~~~~~~~~---------- 395 (902)
T 2oaj_A 326 NYYANPKQMKIFPLPTNVPIVNILPIPRQSPYFAGCHNPGLILLILGNGEIETMLYPSGIFTDKASLFPQ---------- 395 (902)
T ss_dssp HHHHSCSEEEEECCSSSSCEEEEEECCSSCSHHHHTBSCSEEEEEETTSCEEEEETTTCCEECCGGGSCG----------
T ss_pred HHHCCCCCEEEEECCCCCCEEEEEECCCCCCCCCCCCCCEEEEEECCCCCEEEEECCCCCCCCCCCCCCC----------
T ss_conf 6641745227874189995479999778898867787850699991798489997899985565556898----------
Q ss_pred HHHHCCCCEEEEEECC------------------------------CCCCCCCEEEEEECCCCEEEEEEEEEEEECC-EE
Q ss_conf 4330268412775123------------------------------1146663038964299609999901246321-54
Q 003579 368 EEELKLKPVIAFDCAE------------------------------IRERDWCNVVTCHMDTAQAYVWRLQNFVLGE-HI 416 (809)
Q Consensus 368 ~~~~~~~~i~~~~~~~------------------------------~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~-~~ 416 (809)
......+++.++.+.. ....+ ..+++.+..++.+++|++....... ..
T Consensus 396 ~l~~~~~~v~~~~~s~~~~~~w~~~~~~~~~~~~~l~G~~~~v~sv~~spd-g~~laSgs~DgtVrlWd~~~g~~~~~~~ 474 (902)
T 2oaj_A 396 NLSWLRPLATTSMAASVPNKLWLGALSAAQNKDYLLKGGVRTKRQKLPAEY-GTAFITGHSNGSVRIYDASHGDIQDNAS 474 (902)
T ss_dssp GGTTBTTBEEEEEEEEEEHHHHHHHHHTTBCCCCSCCCSBCCCCCCCCCSE-EEEEEEEETTSEEEEEESSCCTTTTTBC
T ss_pred CCCCCCCCEEEEEEEECCHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCC-CCEEEEECCCCCEEEEECCCCCCCCCCE
T ss_conf 522358972489999749999988886046999754578577875333666-7589996589838999787764567736
Q ss_pred EE------CCCCCCCCEEEEEECCCCCEEEEEECCCCEEEEECCCCCEEEE------------E----------------
Q ss_conf 20------6999999759999968998999993799299997877830026------------6----------------
Q 003579 417 LR------PCPENPTAVKACTISACGNFAVLGTAGGWIERFNLQSGISRGS------------Y---------------- 462 (809)
Q Consensus 417 ~~------~~~~~~~~v~~v~~s~~g~~l~~g~~~g~i~i~~~~~~~~~~~------------~---------------- 462 (809)
+. ...+|...|.+++|+|+|+++++|+.||.|++|++.++..... +
T Consensus 475 ~~~~l~~~~~~~h~~~V~svafspdg~~LAsgs~DgtV~lwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 554 (902)
T 2oaj_A 475 FEVNLSRTLNKAKELAVDKISFAAETLELAVSIETGDVVLFKYEVNQFYSVENRPESGDLEMNFRRFSLNNTNGVLVDVR 554 (902)
T ss_dssp EEEEHHHHTTCSSSCCEEEEEEETTTTEEEEEETTSCEEEEEEEECCC---------------CCSCCGGGSSCSEEECG
T ss_pred EEEECHHHCCCCCCCCEEEEEECCCCCEEEEEECCCEEEEEEECCCCCCCCCCCCCCCCCCEEEEECCCCCCCCCCCCCC
T ss_conf 77501541377888764699963899969999458579999924865557545577866511345513467965432242
Q ss_pred ---------ECCCCCCCCCCCCCEEEEEECCCCCEEEEEECCCEEEEEECCCCCEEEE-----E--ECCCCEEEEEEE--
Q ss_conf ---------0755224567556479999918998999995767099997799853453-----4--418772799992--
Q 003579 463 ---------LDMSERSNYAHNGEVVGVACDSTNTLMISAGYHGDIKVWDFKGRDLKSR-----W--EVGCSLVKIVYH-- 524 (809)
Q Consensus 463 ---------~~~~~~~~~~h~~~v~~i~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~-----~--~~~~~i~~~~~s-- 524 (809)
.......+.+|.+.|++++|+|+| +|++++.|+.|++||+.+...+.. + .+...|++++|+
T Consensus 555 ~~~~~~~~~g~~~~~~l~~h~~~V~svafSpdG-~lAsgs~D~tv~lwd~~~~~~~~~~~~~~~~~gh~~~V~sv~Fs~~ 633 (902)
T 2oaj_A 555 DRAPTGVRQGFMPSTAVHANKGKTSAINNSNIG-FVGIAYAAGSLMLIDRRGPAIIYMENIREISGAQSACVTCIEFVIM 633 (902)
T ss_dssp GGCCTTCSEEEEEEEEECCCSCSEEEEEECBTS-EEEEEETTSEEEEEETTTTEEEEEEEGGGTCSSCCCCEEEEEEEEE
T ss_pred CCCCCCCCCCCCEEEEEECCCCCEEEEEECCCC-EEEEEECCCCEEEEECCCCEEEEEEEHHHHCCCCCCCEEEEEEEEE
T ss_conf 368988777601469998688867799964876-8999958976999988898399970246726466661399999998
Q ss_pred ---ECC---CEEEEEECCCEEEEEEC---CCCEEEEEEECCC-----CCEEEEE-EC----------------------C
Q ss_conf ---079---89999949992999995---7885899972499-----9810699-87----------------------8
Q 003579 525 ---RVN---GLLATVADDLVIRLFDV---VALRMVRKFEGHT-----DRITDFC-FS----------------------E 567 (809)
Q Consensus 525 ---~~~---~~la~~~~d~~I~i~d~---~~~~~~~~~~~h~-----~~I~~i~-fs----------------------p 567 (809)
||+ .+|++++.|++|++||+ .+++...++.+|. ++|..++ |+ +
T Consensus 634 ~~~~Dg~~~~~l~sgs~D~tv~~wd~~p~~~g~~~~~~~~~~~~~~~~~v~~i~~~~~~~~~~~~a~~~~~~~l~~~~~~ 713 (902)
T 2oaj_A 634 EYGDDGYSSILMVCGTDMGEVITYKILPASGGKFDVQLMDITNVTSKGPIHKIDAFSKETKSSCLATIPKMQNLSKGLCI 713 (902)
T ss_dssp ECTTSSSEEEEEEEEETTSEEEEEEEEECGGGCEEEEEEEEEECCSSCCCCEEEEEETTTCCBCBCBHHHHHGGGGTCCC
T ss_pred ECCCCCCCCEEEEEEECCCCEEEEEEECCCCCCEEEEECCCEECCCCCCEEEEEEEECCCCCCCCCCHHHHHCCCCCCCC
T ss_conf 41789876338999956873999999558998689996672440788964799858668797366887897255778877
Q ss_pred CCCEEEEEECCCEEEEEECCCCCEEEEEEECC-CEEEE---E------ECCCCCEEEEEEECCCEEEEEECCCC
Q ss_conf 99799999189909999869763788765276-35899---9------76799838999737974999644755
Q 003579 568 DGKWLLSSGMDGSLRIWDVILARQIDAIHVDV-SITAL---S------LSPNMDVLATAHVDQNGVYLWVNRCM 631 (809)
Q Consensus 568 dg~~l~s~s~Dg~I~iwd~~~~~~i~~~~~~~-~v~~i---~------~spdg~~lat~~~d~~~i~iW~~~~~ 631 (809)
++..|+++ +..||+|++++++++.....+. .+.++ . ++++|..|++...|+ .|++|++..+
T Consensus 714 ~~~~l~~~--~~~ir~~~~~~~k~~~k~~~~~~~~~~v~~~~~~~~~~~~~~~~~l~~~~~~g-~i~~~s~p~l 784 (902)
T 2oaj_A 714 PGIVLITG--FDDIRLITLGKSKSTHKGFKYPLAATGLSYISTVEKNNDRKNLTVIITLEING-HLRVFTIPDF 784 (902)
T ss_dssp CEEEEEEC--SSEEEEECTTCCCEEEEECSSCEEEEEEEEEEEECSSSCEEEEEEEEEEETTS-EEEEEETTTC
T ss_pred CEEEEEEE--CCCEEEEECCCCCCEEEECCCCEEEEEEEEEEECCCCCCCCCCEEEEEEECCC-CEEEEECCCH
T ss_conf 73999993--54059996753351236725620144777887013555446736999992799-5999978564
No 9
>1pgu_A Actin interacting protein 1; WD repeat, seven-bladed beta-propeller, protein binding; 2.30A {Saccharomyces cerevisiae} SCOP: b.69.4.1 b.69.4.1 PDB: 1pi6_A
Probab=1.00 E-value=1 Score=443.69 Aligned_cols=513 Identities=12% Similarity=0.156 Sum_probs=432.1
Q ss_pred CCCCCCCEEEEEECCEEEEEE--CCEEEEEECC------EEEEEECCCCCC-EEEEEE----ECCEEEEEECCCCEEEEE
Q ss_conf 878977189999388379998--7929999778------368997045452-799999----499899996799399998
Q 003579 53 PQLPKKIRALASYRDYTFAAY--GNHIAVVKRA------HQVATWSRHSAK-VNLLLL----FGEHILSIDIDGNMFIWA 119 (809)
Q Consensus 53 ~~~~~~I~~la~~~~~~~~a~--g~~i~vw~~~------~~~~~~~~h~~~-V~~i~~----~g~~l~s~~~dg~i~vWd 119 (809)
..|...|++++++|++.++++ ++.|.+|+.. +....+.+|... |.++++ ++++|++++.||.|++|+
T Consensus 15 ~~~~~~v~~~~~spdg~~l~~~~~~~v~v~~~~~~~~~~~~~~~~~~h~~~~v~~~~~sp~~~~~~l~s~~~dg~v~vw~ 94 (615)
T 1pgu_A 15 STQRNFTTHLSYDPTTNAIAYPCGKSAFVRCLDDGDSKVPPVVQFTGHGSSVVTTVKFSPIKGSQYLCSGDESGKVIVWG 94 (615)
T ss_dssp CCCTTCCCCCEEETTTTEEEEEETTEEEEEECCSSCCSSCSEEEECTTTTSCEEEEEECSSTTCCEEEEEETTSEEEEEE
T ss_pred CCCCCCEEEEEECCCCCEEEEECCCEEEEEECCCCCCCCCCCEEEECCCCCEEEEEEECCCCCCCEEEEECCCCEEEEEE
T ss_conf 77658536899889999799935984999977788776514318805788449999979678998899964898799976
Q ss_pred CCCCCC----CCCEEEEEECCCCCCCEEEEECCCCCCEEEEEECC----CEEEEEECCCCCEEEEECCCCCCEEEEEECC
Q ss_conf 278865----53002269738943417999179998899999577----8099996899916999828999789999859
Q 003579 120 FKGIEE----NLAPVGHVKLDDKFTPTCIMHPDTYLNKVIVGSQE----GSLQLWNISTKKKLYEFKGWGSSISSCVSSP 191 (809)
Q Consensus 120 ~~~~~~----~~~~~~~~~~~~~~~~~~~~~p~~~~~~i~~g~~d----g~i~iwd~~~~~~~~~~~~~~~~I~~l~~sp 191 (809)
+.++.. .......+..+...+..+.|+|++ +.+++++.+ +.|.+|+ .++.+..+.+|...|.+++|+|
T Consensus 95 ~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~--~~l~~~~~~~~~~~~v~~~d--~~~~~~~~~~~~~~v~~~~~~~ 170 (615)
T 1pgu_A 95 WTFDKESNSVEVNVKSEFQVLAGPISDISWDFEG--RRLCVVGEGRDNFGVFISWD--SGNSLGEVSGHSQRINACHLKQ 170 (615)
T ss_dssp EEEEGGGTEEEEEEEEEEECCSSCEEEEEECTTS--SEEEEEECCSSCSEEEEETT--TCCEEEECCSCSSCEEEEEECS
T ss_pred CCCCCCCCCCCCCCCCHHHCCCCCEEEEEEECCC--CEEEEECCCCCCCCEEEEEE--CCCCCEEEECCCCCEEEEEECC
T ss_conf 8887655445542000111256637999990799--98999316877755799997--8981031306774388999887
Q ss_pred CCC-EEEEEECCCEEEEEEEECCEEEEEEECCCCC---CEEEEEEECC-CCCEEEEECCCCCEEEEECCCCEEEEEEEC-
Q ss_conf 998-9999967994999990089079999416997---5899998019-998899990998099998898502224531-
Q 003579 192 ALD-VVAVGCSDGKIHVHNVRYDEELVTFTHSMRG---AVTALAFSSD-GQPLLASGASSGVISIWNLEKRRLQSVIRE- 265 (809)
Q Consensus 192 ~~~-~la~g~~dg~i~iwd~~~~~~~~~~~~~~~~---~V~~l~fs~d-g~~~lasg~~dg~I~iwdl~~~~~~~~~~~- 265 (809)
+++ .+++++.|+.|++||+.+++.+..+..+ .. .|.+++|+|+ ++ ++++++.||.|++||+.+++.+..+..
T Consensus 171 ~~~~~l~~~~~d~~v~vwd~~~~~~~~~~~~~-~~~~~~v~~~~~~~~~~~-~l~~~~~dg~i~vwd~~~~~~~~~~~~~ 248 (615)
T 1pgu_A 171 SRPMRSMTVGDDGSVVFYQGPPFKFSASDRTH-HKQGSFVRDVEFSPDSGE-FVITVGSDRKISCFDGKSGEFLKYIEDD 248 (615)
T ss_dssp SSSCEEEEEETTTEEEEEETTTBEEEEEECSS-SCTTCCEEEEEECSTTCC-EEEEEETTCCEEEEETTTCCEEEECCBT
T ss_pred CCCCEEEEEECCCCEEEEECCCCCEEEEECCC-CCCCCEEEEEEECCCCCC-EEEEEECCCEEEEEECCCCCEEEEECCC
T ss_conf 89968999957995999969996101320256-777742899997897788-8999868980899989999785895254
Q ss_pred --CCCCCEEEEEEECCCCEEEEECCCCCEEEEEEECCCCCCEEEEECCCC----CCCCEEEEEECCCCEEEEEECCCCEE
Q ss_conf --334652799994599989998199947999920799995027943588----99996699903997999997899789
Q 003579 266 --AHDNAIISLHFFANEPVLMSASADNSIKMWIFDTTDGDPRLLRFRSGH----SAPPLCIRFYANGRHILSAGQDRAFR 339 (809)
Q Consensus 266 --~h~~~v~~l~~~~~~~~l~s~s~d~~i~iw~~~~~~~~~~~~~~~~~h----~~~v~~i~~~~~g~~l~s~~~dg~i~ 339 (809)
.|...|.++.|+ ++.++++++.|+.+++|++... +.+..+..+ ...+.++.+. ++.++++++.|+.++
T Consensus 249 ~~~~~~~v~~~~~~-~~~~l~~~~~d~~i~~wd~~~~----~~~~~~~~~~~~~~~~~~~~~~~-~~~~l~~~~~~g~i~ 322 (615)
T 1pgu_A 249 QEPVQGGIFALSWL-DSQKFATVGADATIRVWDVTTS----KCVQKWTLDKQQLGNQQVGVVAT-GNGRIISLSLDGTLN 322 (615)
T ss_dssp TBCCCSCEEEEEES-SSSEEEEEETTSEEEEEETTTT----EEEEEEECCTTCGGGCEEEEEEE-ETTEEEEEETTSCEE
T ss_pred CCCCCCCEEEEEEC-CCCEEEEECCCCCEEEEECCCC----CEEEEECCCCCCCCCCEEEEEEC-CCCEEEEEECCCCEE
T ss_conf 44567755899981-8997999848994899978889----27878847877545714699918-997699997899789
Q ss_pred EEEEEECCCCEECCHHHHHHHHHHCCCHHHHHCCCCEEEEEECCCCCCCCCEEEEEECCCCEEEEEEEEEEEECCEEEEC
Q ss_conf 99963054321202235779875201014330268412775123114666303896429960999990124632154206
Q 003579 340 LFSVIQDQQSRELSQRHVAKRARKLKMKEEELKLKPVIAFDCAEIRERDWCNVVTCHMDTAQAYVWRLQNFVLGEHILRP 419 (809)
Q Consensus 340 iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~ 419 (809)
+|++........+.. ...++.++.. .. +.....++.+++|+.. .+.
T Consensus 323 ~~d~~~~~~~~~~~~-----------------~~~~v~~~~~-~~--------l~~~~~dg~i~~w~~~-------~~~- 368 (615)
T 1pgu_A 323 FYELGHDEVLKTISG-----------------HNKGITALTV-NP--------LISGSYDGRIMEWSSS-------SMH- 368 (615)
T ss_dssp EEETTEEEEEEEECC-----------------CSSCEEEEET-TT--------TEEEETTSCEEETTTT-------EEE-
T ss_pred EEECCCCCEEEEEEC-----------------CCCCEEEEEE-CC--------CEEECCCCEEEEEECH-------HHC-
T ss_conf 998889928899947-----------------7787899995-67--------4898799959998752-------415-
Q ss_pred CCCCCCCEEEEEECCCCCEEEEEECCCCEEEEECCCCCEEEEEECCCCCCCCCCCCCEEEEEECCCCCEEEEEECCCEEE
Q ss_conf 99999975999996899899999379929999787783002660755224567556479999918998999995767099
Q 003579 420 CPENPTAVKACTISACGNFAVLGTAGGWIERFNLQSGISRGSYLDMSERSNYAHNGEVVGVACDSTNTLMISAGYHGDIK 499 (809)
Q Consensus 420 ~~~~~~~v~~v~~s~~g~~l~~g~~~g~i~i~~~~~~~~~~~~~~~~~~~~~~h~~~v~~i~~~~~~~~l~s~~~dg~i~ 499 (809)
..|...+.++++ ++++.+++++.+|.+++|++..+... ..+.+++++|++.+++++ .++.+.
T Consensus 369 -~~~~~~v~~~~~-~~~~~l~~~~~d~~i~~~~~~~~~~~---------------~~~~~~~~s~~~~~~~~~-~~~~~~ 430 (615)
T 1pgu_A 369 -QDHSNLIVSLDN-SKAQEYSSISWDDTLKVNGITKHEFG---------------SQPKVASANNDGFTAVLT-NDDDLL 430 (615)
T ss_dssp -CCCCSCEEEEEC-CSTTCCEEEETTTEEEETTEEEEECS---------------SCEEEEEECSSSEEEEEE-TTSEEE
T ss_pred -CCCCCCEEEEEE-CCCCEEEEEECCCCEEEEECCCCCCC---------------CCCEEEEECCCCCEEEEE-CCCCEE
T ss_conf -755685179997-89867999958997999886667636---------------784699982898789996-798269
Q ss_pred EEECCCCCEEEEEECCCCEEEEEEEECCCEEEEEEC-CCEEEEEECCCCEEE-EEEECCCCCEEEEEECCCCCEEEEEEC
Q ss_conf 997799853453441877279999207989999949-992999995788589-997249998106998789979999918
Q 003579 500 VWDFKGRDLKSRWEVGCSLVKIVYHRVNGLLATVAD-DLVIRLFDVVALRMV-RKFEGHTDRITDFCFSEDGKWLLSSGM 577 (809)
Q Consensus 500 iwd~~~~~~~~~~~~~~~i~~~~~s~~~~~la~~~~-d~~I~i~d~~~~~~~-~~~~~h~~~I~~i~fspdg~~l~s~s~ 577 (809)
+|+..+++.+..+.....+.+++++ +.++++++. |+.|++||+.+++.. ..+.+|...|++++|+|++++|++++.
T Consensus 431 ~~~~~~~~~~~~~~~~~~~~~~~~~--~~~l~~~~~~d~~i~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~~~~ 508 (615)
T 1pgu_A 431 ILQSFTGDIIKSVRLNSPGSAVSLS--QNYVAVGLEEGNTIQVFKLSDLEVSFDLKTPLRAKPSYISISPSETYIAAGDV 508 (615)
T ss_dssp EEETTTCCEEEEEECSSCEEEEEEC--SSEEEEEETTTSCEEEEETTEEEEEEECSSCCSSCEEEEEECTTSSEEEEEET
T ss_pred EEECCCCCEEEECCCCCCCEEEEEC--CCEEEEEECCCCEEEEEECCCCCCCCCCCCCCCCCEEEEEECCCCCEEEECCC
T ss_conf 9944678665551567872077883--88899965689869999888854353336776575079999899998998179
Q ss_pred CCEEEEEECCCCCEEEEEE--ECCCEEEEEECC----------CCCEEEEEEECCCEEEEEECCCCC
Q ss_conf 9909999869763788765--276358999767----------998389997379749996447556
Q 003579 578 DGSLRIWDVILARQIDAIH--VDVSITALSLSP----------NMDVLATAHVDQNGVYLWVNRCMF 632 (809)
Q Consensus 578 Dg~I~iwd~~~~~~i~~~~--~~~~v~~i~~sp----------dg~~lat~~~d~~~i~iW~~~~~~ 632 (809)
|+.|++||+.+++++..+. +...+++++|+| ++++|++++.|+ .|++|+.+...
T Consensus 509 dg~i~iw~~~~~~~~~~~~~~h~~~v~~~~~sp~~~~~~~~~~~~~~l~~~~~dg-~i~iw~~~~~~ 574 (615)
T 1pgu_A 509 MGKILLYDLQSREVKTSRWAFRTSKINAISWKPAEKGANEEEIEEDLVATGSLDT-NIFIYSVKRPM 574 (615)
T ss_dssp TSCEEEEETTTTEEEECCSCCCSSCEEEEEECCCC------CCSCCEEEEEETTS-CEEEEESSCTT
T ss_pred CCEEEEEECCCCCCEEEEECCCCCCEEEEEECCCCCCCCCCCCCCCEEEEECCCC-CEEEEECCCCC
T ss_conf 9859986577776246760478871469997683234533246888899981797-19999778885
No 10
>2oaj_A Protein SNI1; WD40 repeat, beta propeller, endocytosis/exocytosis complex; 2.40A {Saccharomyces cerevisiae}
Probab=1.00 E-value=1 Score=438.87 Aligned_cols=605 Identities=12% Similarity=0.079 Sum_probs=423.7
Q ss_pred CCCCCEEE--EEECCCCCEEEEECCCEEEEEEECCCEEEEEECCCCEEEEECCCCCCCCEEEEEECCEEEEEEC---CEE
Q ss_conf 55433035--6731896217997198199999809959999758558899548789771899993883799987---929
Q 003579 3 IFEPYKAI--GYITSSVPFSVQRLGTENFVTVSVGKAFHIYNCAKLNLVLVGPQLPKKIRALASYRDYTFAAYG---NHI 77 (809)
Q Consensus 3 ~~~p~r~~--g~v~~~v~~~~~~~~~~~~i~~~~~~~i~iwd~~~~~~~~~~~~~~~~I~~la~~~~~~~~a~g---~~i 77 (809)
+|.+.... |+ ...|.-....+++.++++++.|++|++||..+...+.... |...|++++|+| +.+++++ +.|
T Consensus 5 ~~~~~~~~~~gh-~~~V~~lafspdg~~lAsgs~Dg~I~lw~~~~~~~~~~~~-~~~~V~~l~fsp-g~~L~S~s~D~~v 81 (902)
T 2oaj_A 5 IFSLAETNKYGM-SSKPIAAAFDFTQNLLAIATVTGEVHIYGQQQVEVVIKLE-DRSAIKEMRFVK-GIYLVVINAKDTV 81 (902)
T ss_dssp TEEEEEEEEEEC-SSCEEEEEEETTTTEEEEEETTSEEEEECSTTCEEEEECS-SCCCEEEEEEET-TTEEEEEETTCEE
T ss_pred EEEECCCCCCCC-CCCCEEEEECCCCCEEEEEECCCEEEEEECCCCEEEEECC-CCCCEEEEEECC-CCEEEEEECCCEE
T ss_conf 220212021688-9984899997999989999297989999689947999868-999779999908-9889999895959
Q ss_pred EEEEC--CEEEEEECCCCCCEEEEEE--ECCEEEEEECCCCEEEEECCCCCCCCCEE-------EEEECCCCCCCEEEEE
Q ss_conf 99977--8368997045452799999--49989999679939999827886553002-------2697389434179991
Q 003579 78 AVVKR--AHQVATWSRHSAKVNLLLL--FGEHILSIDIDGNMFIWAFKGIEENLAPV-------GHVKLDDKFTPTCIMH 146 (809)
Q Consensus 78 ~vw~~--~~~~~~~~~h~~~V~~i~~--~g~~l~s~~~dg~i~vWd~~~~~~~~~~~-------~~~~~~~~~~~~~~~~ 146 (809)
++|+. ++.+..+. |...|+++++ ++++|++++.||.|++||+.++......+ .....|...+..+.|+
T Consensus 82 ~lWd~~~~~~~~~~~-~~~~V~~v~~sp~g~~l~sgs~dg~V~lwd~~~~~~~~~~i~~~~~~~~~~~~h~~~V~sl~~s 160 (902)
T 2oaj_A 82 YVLSLYSQKVLTTVF-VPGKITSIDTDASLDWMLIGLQNGSMIVYDIDRDQLSSFKLDNLQKSSFFPAARLSPIVSIQWN 160 (902)
T ss_dssp EEEETTTCSEEEEEE-CSSCEEEEECCTTCSEEEEEETTSCEEEEETTTTEEEEEEECCHHHHHTCSSSCCCCCCEEEEE
T ss_pred EEEECCCCCEEEEEC-CCCCEEEEEECCCCCEEEEECCCCCEEEEECCCCCCCCCEECCCCCCCCCCCCCCCCEEEEEEC
T ss_conf 999899996899974-8998799998799998999949992999999999626503043210002544578973899976
Q ss_pred CCCCCCEEEEEECCCEEEEEECCCCCEEEEECCC------------------CCCEEEEEECCCCCEEEEEECCCEEEEE
Q ss_conf 7999889999957780999968999169998289------------------9978999985999899999679949999
Q 003579 147 PDTYLNKVIVGSQEGSLQLWNISTKKKLYEFKGW------------------GSSISSCVSSPALDVVAVGCSDGKIHVH 208 (809)
Q Consensus 147 p~~~~~~i~~g~~dg~i~iwd~~~~~~~~~~~~~------------------~~~I~~l~~sp~~~~la~g~~dg~i~iw 208 (809)
|++. +.+++|+.||.| +||+++++.+..+..| ...|++++|+|++++|++++.||.|++|
T Consensus 161 p~~~-~~l~~g~~dg~v-lWd~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~h~~~V~~v~fspdg~~lasgs~Dg~i~lW 238 (902)
T 2oaj_A 161 PRDI-GTVLISYEYVTL-TYSLVENEIKQSFIYELPPFAPGGDFSEKTNEKRTPKVIQSLYHPNSLHIITIHEDNSLVFW 238 (902)
T ss_dssp TTEE-EEEEEECSSCEE-EEETTTTEEEEEECCCBCTTCCCSTTCCCTTSCBCCCEEEEEECTTSSEEEEEETTCCEEEE
T ss_pred CCCC-CEEEEEECCCCE-EEECCCCCEEEEEECCCCCCCCCCCCCCCCCCCCCCCEEEEEECCCCCEEEEEECCCEEEEE
T ss_conf 6999-989999189849-99877896579983355776777654433234567776899985999999999899939999
Q ss_pred EEECCEEEEEEEC-----C------------CCCCEEEEEEEC----CCCCEEEEECCC-----CCEEEEECC-------
Q ss_conf 9008907999941-----6------------997589999801----999889999099-----809999889-------
Q 003579 209 NVRYDEELVTFTH-----S------------MRGAVTALAFSS----DGQPLLASGASS-----GVISIWNLE------- 255 (809)
Q Consensus 209 d~~~~~~~~~~~~-----~------------~~~~V~~l~fs~----dg~~~lasg~~d-----g~I~iwdl~------- 255 (809)
|+++++.+..... + +...|.+++|++ ++..++++|+.+ ..+.+|++.
T Consensus 239 d~~~g~~~~~r~l~~~~~~~~~~~~~~~~~~~~~~V~~v~w~~~~~pd~~~ll~sg~~~~~~~~~~v~~~~~~~~~~~~~ 318 (902)
T 2oaj_A 239 DANSGHMIMARTVFETEINVPQPDYIRDSSTNAAKISKVYWMCENNPEYTSLLISHKSISRGDNQSLTMIDLGYTPRYSI 318 (902)
T ss_dssp ETTTCCEEEEECSSCSCTTSCCTTCCCCCSSCCCEEEEEEEEECSSTTEEEEEEEEECSTTSSCCCEEEEEEEECCCGGG
T ss_pred ECCCCCEEEEEEECCCCCCCCCCCCCCCCCCCCCCEEEEEEEECCCCCCCEEEEECCCCCCCCCCEEEEEECCCCCCCCC
T ss_conf 87899688888501234578777678888555677457999734999887899968877778885289995478987555
Q ss_pred -----------CCEEEEEEECCCCCCEEEEEEEC----------CCCEEEEECCCCCEEEEEEECCCCCCE---------
Q ss_conf -----------85022245313346527999945----------999899981999479999207999950---------
Q 003579 256 -----------KRRLQSVIREAHDNAIISLHFFA----------NEPVLMSASADNSIKMWIFDTTDGDPR--------- 305 (809)
Q Consensus 256 -----------~~~~~~~~~~~h~~~v~~l~~~~----------~~~~l~s~s~d~~i~iw~~~~~~~~~~--------- 305 (809)
..+....+...+...+..+.+.+ +...+++++.|+.+++|++..+.....
T Consensus 319 ~s~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~sp~~~g~~d~~~l~~~s~dg~l~~~~~~~g~~~~~~~~~~~~l~ 398 (902)
T 2oaj_A 319 TSYEGMKNYYANPKQMKIFPLPTNVPIVNILPIPRQSPYFAGCHNPGLILLILGNGEIETMLYPSGIFTDKASLFPQNLS 398 (902)
T ss_dssp CCHHHHHHHHHSCSEEEEECCSSSSCEEEEEECCSSCSHHHHTBSCSEEEEEETTSCEEEEETTTCCEECCGGGSCGGGT
T ss_pred CCHHHHHHHHCCCCCEEEEECCCCCCEEEEEECCCCCCCCCCCCCCEEEEEECCCCCEEEEECCCCCCCCCCCCCCCCCC
T ss_conf 42556546641745227874189995479999778898867787850699991798489997899985565556898522
Q ss_pred ----------------------------EEEECCCCCCCCEEEEEECCCCEEEEEECCCCEEEEEEEECCCCE--ECCHH
Q ss_conf ----------------------------279435889999669990399799999789978999963054321--20223
Q 003579 306 ----------------------------LLRFRSGHSAPPLCIRFYANGRHILSAGQDRAFRLFSVIQDQQSR--ELSQR 355 (809)
Q Consensus 306 ----------------------------~~~~~~~h~~~v~~i~~~~~g~~l~s~~~dg~i~iwd~~~~~~~~--~~~~~ 355 (809)
....+.+|...+..++|+|+++.+++++.|++|++||+..+.... .+..
T Consensus 399 ~~~~~v~~~~~s~~~~~~w~~~~~~~~~~~~~l~G~~~~v~sv~~spdg~~laSgs~DgtVrlWd~~~g~~~~~~~~~~- 477 (902)
T 2oaj_A 399 WLRPLATTSMAASVPNKLWLGALSAAQNKDYLLKGGVRTKRQKLPAEYGTAFITGHSNGSVRIYDASHGDIQDNASFEV- 477 (902)
T ss_dssp TBTTBEEEEEEEEEEHHHHHHHHHTTBCCCCSCCCSBCCCCCCCCCSEEEEEEEEETTSEEEEEESSCCTTTTTBCEEE-
T ss_pred CCCCCEEEEEEEECCHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCEEEEECCCCCEEEEECCCCCCCCCCEEEE-
T ss_conf 3589724899997499999888860469997545785778753336667589996589838999787764567736775-
Q ss_pred HHHHHHHHCCCHHHHHCCCCEEEEEECCCCCCCCCEEEEEECCCCEEEEEEEEEEEE-----------------------
Q ss_conf 577987520101433026841277512311466630389642996099999012463-----------------------
Q 003579 356 HVAKRARKLKMKEEELKLKPVIAFDCAEIRERDWCNVVTCHMDTAQAYVWRLQNFVL----------------------- 412 (809)
Q Consensus 356 ~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~----------------------- 412 (809)
...+ .. .......+.+++++. +.. .++.+..++.+++|++.....
T Consensus 478 ~l~~---~~----~~~h~~~V~svafsp----dg~-~LAsgs~DgtV~lwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 545 (902)
T 2oaj_A 478 NLSR---TL----NKAKELAVDKISFAA----ETL-ELAVSIETGDVVLFKYEVNQFYSVENRPESGDLEMNFRRFSLNN 545 (902)
T ss_dssp EHHH---HT----TCSSSCCEEEEEEET----TTT-EEEEEETTSCEEEEEEEECCC---------------CCSCCGGG
T ss_pred ECHH---HC----CCCCCCCEEEEEECC----CCC-EEEEEECCCEEEEEEECCCCCCCCCCCCCCCCCCEEEEECCCCC
T ss_conf 0154---13----778887646999638----999-69999458579999924865557545577866511345513467
Q ss_pred ------------------CCEEEECCCCCCCCEEEEEECCCCCEEEEEECCCCEEEEECCCCCEEEEEECCCCCCCC-CC
Q ss_conf ------------------21542069999997599999689989999937992999978778300266075522456-75
Q 003579 413 ------------------GEHILRPCPENPTAVKACTISACGNFAVLGTAGGWIERFNLQSGISRGSYLDMSERSNY-AH 473 (809)
Q Consensus 413 ------------------~~~~~~~~~~~~~~v~~v~~s~~g~~l~~g~~~g~i~i~~~~~~~~~~~~~~~~~~~~~-~h 473 (809)
+...+.....|...|++++|+|+| ++++|+.||.|++||+..+........ .... +|
T Consensus 546 ~~~~~~~~~~~~~~~~~~g~~~~~~l~~h~~~V~svafSpdG-~lAsgs~D~tv~lwd~~~~~~~~~~~~---~~~~~gh 621 (902)
T 2oaj_A 546 TNGVLVDVRDRAPTGVRQGFMPSTAVHANKGKTSAINNSNIG-FVGIAYAAGSLMLIDRRGPAIIYMENI---REISGAQ 621 (902)
T ss_dssp SSCSEEECGGGCCTTCSEEEEEEEEECCCSCSEEEEEECBTS-EEEEEETTSEEEEEETTTTEEEEEEEG---GGTCSSC
T ss_pred CCCCCCCCCCCCCCCCCCCCCEEEEEECCCCCEEEEEECCCC-EEEEEECCCCEEEEECCCCEEEEEEEH---HHHCCCC
T ss_conf 965432242368988777601469998688867799964876-899995897699998889839997024---6726466
Q ss_pred CCCEEEEEEC-----CCC---CEEEEEECCCEEEEEEC---CCCCEEEEEECC------CCEEEEE-EE-----------
Q ss_conf 5647999991-----899---89999957670999977---998534534418------7727999-92-----------
Q 003579 474 NGEVVGVACD-----STN---TLMISAGYHGDIKVWDF---KGRDLKSRWEVG------CSLVKIV-YH----------- 524 (809)
Q Consensus 474 ~~~v~~i~~~-----~~~---~~l~s~~~dg~i~iwd~---~~~~~~~~~~~~------~~i~~~~-~s----------- 524 (809)
...|++++|+ ||+ +++++++.|++|++|++ .+++....+..+ .++..+. |+
T Consensus 622 ~~~V~sv~Fs~~~~~~Dg~~~~~l~sgs~D~tv~~wd~~p~~~g~~~~~~~~~~~~~~~~~v~~i~~~~~~~~~~~~a~~ 701 (902)
T 2oaj_A 622 SACVTCIEFVIMEYGDDGYSSILMVCGTDMGEVITYKILPASGGKFDVQLMDITNVTSKGPIHKIDAFSKETKSSCLATI 701 (902)
T ss_dssp CCCEEEEEEEEEECTTSSSEEEEEEEEETTSEEEEEEEEECGGGCEEEEEEEEEECCSSCCCCEEEEEETTTCCBCBCBH
T ss_pred CCCEEEEEEEEEECCCCCCCCEEEEEEECCCCEEEEEEECCCCCCEEEEECCCEECCCCCCEEEEEEEECCCCCCCCCCH
T ss_conf 66139999999841789876338999956873999999558998689996672440788964799858668797366887
Q ss_pred -----------ECCCEEEEEECCCEEEEEECCCCEEEEEEECCCCCEEEE---E------ECCCCCEEEEEECCCEEEEE
Q ss_conf -----------079899999499929999957885899972499981069---9------87899799999189909999
Q 003579 525 -----------RVNGLLATVADDLVIRLFDVVALRMVRKFEGHTDRITDF---C------FSEDGKWLLSSGMDGSLRIW 584 (809)
Q Consensus 525 -----------~~~~~la~~~~d~~I~i~d~~~~~~~~~~~~h~~~I~~i---~------fspdg~~l~s~s~Dg~I~iw 584 (809)
+++.++++ .+..|++|++.++++.++..+|...+..+ . |++++..|++.+.||+|++|
T Consensus 702 ~~~~~l~~~~~~~~~~l~~--~~~~ir~~~~~~~k~~~k~~~~~~~~~~v~~~~~~~~~~~~~~~~~l~~~~~~g~i~~~ 779 (902)
T 2oaj_A 702 PKMQNLSKGLCIPGIVLIT--GFDDIRLITLGKSKSTHKGFKYPLAATGLSYISTVEKNNDRKNLTVIITLEINGHLRVF 779 (902)
T ss_dssp HHHHGGGGTCCCCEEEEEE--CSSEEEEECTTCCCEEEEECSSCEEEEEEEEEEEECSSSCEEEEEEEEEEETTSEEEEE
T ss_pred HHHHCCCCCCCCCEEEEEE--ECCCEEEEECCCCCCEEEECCCCEEEEEEEEEEECCCCCCCCCCEEEEEEECCCCEEEE
T ss_conf 8972557788777399999--35405999675335123672562014477788701355544673699999279959999
Q ss_pred ECCCCCEEEEEEECCC-----EEEEEECCCCCEEEEEEECCC-EEEEEECCCCC
Q ss_conf 8697637887652763-----589997679983899973797-49996447556
Q 003579 585 DVILARQIDAIHVDVS-----ITALSLSPNMDVLATAHVDQN-GVYLWVNRCMF 632 (809)
Q Consensus 585 d~~~~~~i~~~~~~~~-----v~~i~~spdg~~lat~~~d~~-~i~iW~~~~~~ 632 (809)
++++.+++..+..... +....|+++|+.+.-.+.... -+.+|.....+
T Consensus 780 s~p~l~~~~~~~~~~~~~~~~~~~~~~~~~G~~~~~~~~~e~~~~~~~~~~~~~ 833 (902)
T 2oaj_A 780 TIPDFKEQMSEHIPFPIAAKYITESSVLRNGDIAIRVSEFQASLFSTVKEQDTL 833 (902)
T ss_dssp ETTTCCEEEEEECSSCCCHHHHTTCEECTTSCEEEECSSSEEEEEEEESCCCCC
T ss_pred ECCCHHHHHHCCCCCCCCCCCCCCEEECCCCCEEEEECHHHEEEEEEECCCCCC
T ss_conf 785647784165886024464320289689889998270264899997477777
Done!