Query 003580
Match_columns 809
No_of_seqs 320 out of 846
Neff 4.3
Searched_HMMs 29240
Date Tue Mar 26 18:43:21 2013
Command hhsearch -i /local_scratch/syshi/lefta3m/003580.a3m -d /local_scratch/syshi/pdb70.hhm -v 0 -o /local_scratch/syshi/H1_1628-1632//hhsearch_pdb/003580hhsearch_pdb
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 1wid_A DNA-binding protein RAV 1.0 1 1 209.7 14.3 116 164-279 6-123 (130)
2 4i1k_A B3 domain-containing tr 1.0 1 1 130.2 11.6 98 167-274 44-143 (146)
3 1yel_A AT1G16640; CESG, protei 1.0 1 1 101.0 9.8 94 169-273 8-101 (104)
4 1na6_A Ecorii, restriction end 1.0 1 1 37.5 8.0 93 168-261 17-123 (404)
5 1vd2_A Protein kinase C, IOTA 1.0 1 1 31.1 6.4 60 677-743 4-63 (89)
6 1wmh_B Partitioning defective- 1.0 1 1 31.0 6.1 58 680-744 7-65 (86)
7 1q1o_A Cell division control p 1.0 1 1 26.5 7.0 77 676-754 2-85 (98)
8 2kkc_A Sequestosome-1; P62, PB 1.0 1 1 25.1 5.7 62 678-744 4-80 (102)
9 2ktr_A Sequestosome-1; autopha 1.0 1 1 24.9 6.2 62 678-744 19-95 (117)
10 1pqs_A Cell division control p 1.0 1 1 22.4 3.9 59 694-754 5-64 (77)
No 1
>1wid_A DNA-binding protein RAV1; DNA-binding domain, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Arabidopsis thaliana} SCOP: b.142.1.2
Probab=1.00 E-value=1 Score=209.74 Aligned_cols=116 Identities=31% Similarity=0.495 Sum_probs=106.5
Q ss_pred CCCCCCEEEEEECCCCCCCCCCCEEEECCCHHHCCCCCCCCCCCCCEEEEEEECCCCEEEEEEEEECCCCCEEEECCCHH
Q ss_conf 99987605998567256999994367011031029999977899951999964899869999999299971376034000
Q 003580 164 PTKSTPHMFCKTLTASDTSTHGGFSVPRRAAEDCFPPLDYKQQRPSQELVAKDLHGVEWRFRHIYRGQPRRHLLTTGWSI 243 (809)
Q Consensus 164 ~~~~~~~~F~K~LT~SDv~~~ggfsVPk~~Ae~~FPpLd~~~~~p~q~L~~~Dl~G~~W~Fr~iyrg~prrhlLTtGWs~ 243 (809)
..++...+|+|+||+|||+++++|+||+++|+.+||+++..+..+.++|.++|.+|++|+|||+||+++++|+|++||+.
T Consensus 6 ~~~~~~~~F~K~Lt~SDv~~~~rL~iPk~~a~~~lP~~~~~~~~~~~~l~l~D~~Gk~W~fr~~~~~~~~~~~Lt~GW~~ 85 (130)
T 1wid_A 6 SGRSAEALFEKAVTPSDVGKLNRLVIPKHHAEKHFPLPSSNVSVKGVLLNFEDVNGKVWRFRYSYWNSSQSYVLTKGWSR 85 (130)
T ss_dssp --CCCEEEEEEECCTTTTSSSCCEEECHHHHTTTSCCCSSCCSSCCEEEEEEETTTEEEEEEEEEETTTTEEEEESSHHH
T ss_pred CCCCCCCEEEEEEEHHHCCCCCEEEECHHHHHHHCCCCCCCCCCCCEEEEEEECCCCEEEEEEEEECCCCCEEECCCHHH
T ss_conf 89998624999985577189777996789999668865444578838999995899999999999789996388377488
Q ss_pred HHCCCCCCCCCEEEEEECCC--CCEEEEEEECCCCCCC
Q ss_conf 10036876698799998689--8479957732589989
Q 003580 244 FVSQKNLVSGDAVLFLRGKD--GELRLGIRRSVQPRNG 279 (809)
Q Consensus 244 FVr~K~L~aGD~VvF~R~~~--Gel~vGIRRa~r~~~~ 279 (809)
||++|+|++||.|+|++.++ +.|+|++||+.++...
T Consensus 86 FV~~~~L~~GD~~~F~~~~~~~~~l~I~~rr~~~~~~~ 123 (130)
T 1wid_A 86 FVKEKNLRAGDVVSFSRSNGQDQQLYIGWKSRSGSDLD 123 (130)
T ss_dssp HHHHTTCCTTCEEEEEECCSSSCCEEEEEECCCSCSSC
T ss_pred HHHHCCCCCCCEEEEEEECCCCCEEEEEEEECCCCCCC
T ss_conf 77871998898999999538996899999989999866
No 2
>4i1k_A B3 domain-containing transcription factor VRN1; B3 domain beta-barrel, DNA binding protein; 1.60A {Arabidopsis thaliana}
Probab=1.00 E-value=1 Score=130.16 Aligned_cols=98 Identities=21% Similarity=0.287 Sum_probs=85.5
Q ss_pred CCCEEEEEECCCCCCCCCCCEEEECCCHHHCCCCCCCCCCCCCEEEEEEECCCCEEEEEEEEECCCCCEEEECCCHHHHC
Q ss_conf 87605998567256999994367011031029999977899951999964899869999999299971376034000100
Q 003580 167 STPHMFCKTLTASDTSTHGGFSVPRRAAEDCFPPLDYKQQRPSQELVAKDLHGVEWRFRHIYRGQPRRHLLTTGWSIFVS 246 (809)
Q Consensus 167 ~~~~~F~K~LT~SDv~~~ggfsVPk~~Ae~~FPpLd~~~~~p~q~L~~~Dl~G~~W~Fr~iyrg~prrhlLTtGWs~FVr 246 (809)
+...+|.|+||+||+.....|.||+.+++.+||..+ +.+.+.|. |+.|.|+++|++. ++.|++||..||+
T Consensus 44 s~~P~Fvk~l~~S~v~~~~~L~IP~~Fa~~~lp~~~-------~~i~L~~~-gk~W~v~~~~~~~--~~~ls~GW~~Fv~ 113 (146)
T 4i1k_A 44 PTNPFFRVVLRPSYLYRGCIMYLPSGFAEKYLSGIS-------GFIKVQLA-EKQWPVRCLYKAG--RAKFSQGWYEFTL 113 (146)
T ss_dssp CSSCEEEEECCGGGSSTTCCEECCHHHHHHHCTTCC-------SEEEEEET-TEEEEEEEEEETT--EEEECTTHHHHHH
T ss_pred CCCCEEEEEECCHHCCCCCEEEECHHHHHHHCCCCC-------EEEEEEEC-CCEEEEEEEEECC--CEEECCCHHHHHH
T ss_conf 999989999785661898679909999997488888-------37999979-9478989999589--0787776389888
Q ss_pred CCCCCCCCEEEEEECCCC--CEEEEEEECC
Q ss_conf 368766987999986898--4799577325
Q 003580 247 QKNLVSGDAVLFLRGKDG--ELRLGIRRSV 274 (809)
Q Consensus 247 ~K~L~aGD~VvF~R~~~G--el~vGIRRa~ 274 (809)
+++|++||.++|...++. .+.|.|-|+.
T Consensus 114 dn~L~~GD~cvFeli~~~~~~f~V~IfR~~ 143 (146)
T 4i1k_A 114 ENNLGEGDVCVFELLRTRDFVLKVTAFRVN 143 (146)
T ss_dssp HTTCCTTCEEEEEECSSSSCEEEEEEECCC
T ss_pred HCCCCCCCEEEEEEECCCCEEEEEEEEECC
T ss_conf 759998989999993698659999999445
No 3
>1yel_A AT1G16640; CESG, protein structure initiative, structural genomics, center for eukaryotic structural genomics, unknown function; NMR {Arabidopsis thaliana} SCOP: b.142.1.2
Probab=1.00 E-value=1 Score=101.00 Aligned_cols=94 Identities=23% Similarity=0.377 Sum_probs=80.2
Q ss_pred CEEEEEECCCCCCCCCCCEEEECCCHHHCCCCCCCCCCCCCEEEEEEECCCCEEEEEEEEECCCCCEEEECCCHHHHCCC
Q ss_conf 60599856725699999436701103102999997789995199996489986999999929997137603400010036
Q 003580 169 PHMFCKTLTASDTSTHGGFSVPRRAAEDCFPPLDYKQQRPSQELVAKDLHGVEWRFRHIYRGQPRRHLLTTGWSIFVSQK 248 (809)
Q Consensus 169 ~~~F~K~LT~SDv~~~ggfsVPk~~Ae~~FPpLd~~~~~p~q~L~~~Dl~G~~W~Fr~iyrg~prrhlLTtGWs~FVr~K 248 (809)
...|.|+|+++|. ..++.||+..++.+.+.+. ..+.++|..|+.|.+++.++ ..+..|+.||..||+++
T Consensus 8 ~p~F~K~l~~~~~--~~~L~IP~~F~~~~~~~~~-------~~v~L~~~~G~~W~v~~~~~--~~~~~l~~GW~~Fv~~~ 76 (104)
T 1yel_A 8 EVQFMKPFISEKS--SKSLEIPLGFNEYFPAPFP-------ITVDLLDYSGRSWTVRMKKR--GEKVFLTVGWENFVKDN 76 (104)
T ss_dssp CEEEEEECCHHHH--TTCEECCHHHHTTCCCCCC-------SEEEEEETTSCEEEEEEEEE--TTEEEECTTHHHHHHHH
T ss_pred CCCEEEEECCCCC--CCEEECCHHHHHHCCCCCC-------CEEEEECCCCCEEEEEEEEE--CCCEEECCCHHHHHHHC
T ss_conf 9878999877775--5318889999986486699-------88999979999999999998--99499862949999975
Q ss_pred CCCCCCEEEEEECCCCCEEEEEEEC
Q ss_conf 8766987999986898479957732
Q 003580 249 NLVSGDAVLFLRGKDGELRLGIRRS 273 (809)
Q Consensus 249 ~L~aGD~VvF~R~~~Gel~vGIRRa 273 (809)
+|++||.++|....+..+.|-|=+.
T Consensus 77 ~L~~GD~lvF~~~~~~~f~V~If~~ 101 (104)
T 1yel_A 77 NLEDGKYLQFIYDRDRTFYVIIYGH 101 (104)
T ss_dssp TCCTTCEEEEEECSSSEEEEEEECS
T ss_pred CCCCCCEEEEEECCCCEEEEEEECC
T ss_conf 9998989999985897699999789
No 4
>1na6_A Ecorii, restriction endonuclease ecorii; site-specific restriction, mutation, replication, hydrolase; 2.10A {Escherichia coli} SCOP: b.142.1.1 c.52.1.22 PDB: 3hqg_A 3hqf_A
Probab=1.00 E-value=1 Score=37.55 Aligned_cols=93 Identities=24% Similarity=0.314 Sum_probs=65.8
Q ss_pred CCEEEEEECCCCCCCCC----CCEEEECCCHHHCCCCCCC-CCCCCCEEEEEE--ECCCCEEEEEEEEEC----CC--CC
Q ss_conf 76059985672569999----9436701103102999997-789995199996--489986999999929----99--71
Q 003580 168 TPHMFCKTLTASDTSTH----GGFSVPRRAAEDCFPPLDY-KQQRPSQELVAK--DLHGVEWRFRHIYRG----QP--RR 234 (809)
Q Consensus 168 ~~~~F~K~LT~SDv~~~----ggfsVPk~~Ae~~FPpLd~-~~~~p~q~L~~~--Dl~G~~W~Fr~iyrg----~p--rr 234 (809)
....|+|.|++.|++.. +++.+|+......||.|+- .+..|.+.+.+. |...-++.++.+|.+ ++ ..
T Consensus 17 ~~~v~~K~LSAnDtgatgshQ~gi~ipk~~l~~lfp~lg~~~e~~~~~~~~~~l~d~d~p~td~~~twYn~R~~~~tRnE 96 (404)
T 1na6_A 17 NYFVYIKRLSANDTGATGGHQVGLYIPSGIVEKLFPSINHTRELNPSVFLTAHVSSHDCPDSEARAIYYNSAHFGKTRNE 96 (404)
T ss_dssp SEEEEEEECCHHHHTCC---CCCCCCCHHHHHHHCGGGCCCSSSSCEEEEEEEESSSCCCCEEEEEEEECGGGTTSCCCE
T ss_pred CCHHEEEECCCCCCCCCCCCCCCCCCCHHHHHHHCCCCCCCCCCCCCCEEEEEECCCCCCEEEEEEEEECCCCCCCCCCC
T ss_conf 60413577224457887776444578568999863548986556776315778416888427789998326466898874
Q ss_pred EEEECCCH-HHHCCCCCCCCCEEEEEEC
Q ss_conf 37603400-0100368766987999986
Q 003580 235 HLLTTGWS-IFVSQKNLVSGDAVLFLRG 261 (809)
Q Consensus 235 hlLTtGWs-~FVr~K~L~aGD~VvF~R~ 261 (809)
|.||. |. .+.-.....+||-++|.+.
T Consensus 97 yRLt~-~~~~~~~~~~a~~GDLlvia~~ 123 (404)
T 1na6_A 97 KRITR-WGRGSPLQDPENTGALTLLAFK 123 (404)
T ss_dssp EEEEC-CCTTSGGGCGGGTTCEEEEEEE
T ss_pred EEEEE-CCCCCCCCCCCCCCCEEEEEEE
T ss_conf 58840-2789865466888788999872
No 5
>1vd2_A Protein kinase C, IOTA type; PB1 domain, OPCA motif, APKC, ZIP/P62, MEK5, molecular recognition, transferase; NMR {Homo sapiens} SCOP: d.15.2.2 PDB: 1wmh_A
Probab=1.00 E-value=1 Score=31.13 Aligned_cols=60 Identities=15% Similarity=0.279 Sum_probs=45.6
Q ss_pred CCCCEEEEEECCCEECCCCCCCCCCCHHHHHHHHHHHHCCCCCCCCCCCCCEEEEECCCCCEEEECC
Q ss_conf 9775479965461101100556978969999999987601344469999808999718998678357
Q 003580 677 GKRSCTKVHKQGSLVGRAIDLWRLNGYNDLLSELEHLFNMEGLLRDPAKGWRILYTDSENDVMVVGD 743 (809)
Q Consensus 677 ~~r~~vKV~m~G~~vGRkvDL~~~~~Y~eL~~~Le~MF~~~g~L~~~~~~w~ivY~D~EGD~mLVGD 743 (809)
+...-+|++-+|..+-=.++. --+|++|..++..+|.+. ....+++.|.|.|||+.-+-.
T Consensus 4 ~~~vkvK~~~~gdi~~~~v~~--~i~~~~L~~kv~~~~~~~-----~~~~f~lky~DEeGD~itisS 63 (89)
T 1vd2_A 4 GSQVRVKAYYRGDIMITHFEP--SISFEGLCNEVRDMCSFD-----NEQLFTMKWIDEEGDPCTVSS 63 (89)
T ss_dssp SSCEEEEEESSSCEEEEEECT--TCCHHHHHHHHHHHTTCC-----SSCCEEEEECCSSSCCEECCS
T ss_pred CCEEEEEEEECCEEEEEECCC--CCCHHHHHHHHHHHHCCC-----CCCEEEEEEECCCCCCCCCCC
T ss_conf 871899999478599998799--989999999999996889-----898279999989979503348
No 6
>1wmh_B Partitioning defective-6 homolog alpha; kinase, PB1 domain, OPCA motif, APKC, cell polarity, transferase/cell cycle complex; 1.50A {Homo sapiens} SCOP: d.15.2.2
Probab=1.00 E-value=1 Score=31.02 Aligned_cols=58 Identities=19% Similarity=0.314 Sum_probs=46.3
Q ss_pred CEEEEEECCCEECC-CCCCCCCCCHHHHHHHHHHHHCCCCCCCCCCCCCEEEEECCCCCEEEECCC
Q ss_conf 54799654611011-005569789699999999876013444699998089997189986783578
Q 003580 680 SCTKVHKQGSLVGR-AIDLWRLNGYNDLLSELEHLFNMEGLLRDPAKGWRILYTDSENDVMVVGDD 744 (809)
Q Consensus 680 ~~vKV~m~G~~vGR-kvDL~~~~~Y~eL~~~Le~MF~~~g~L~~~~~~w~ivY~D~EGD~mLVGD~ 744 (809)
.-||.+-++. +-| ++|-....+|++|..-++++|.+ +.-.+++.|+|.+||++-.-+|
T Consensus 7 l~vKskf~aE-~RRFs~d~~~~~~fe~f~~lv~~lh~L------~~~~f~i~Y~D~dGDLlpInnD 65 (86)
T 1wmh_B 7 VEVKSKFDAE-FRRFALPRASVSGFQEFSRLLRAVHQI------PGLDVLLGYTDAHGDLLPLTND 65 (86)
T ss_dssp EEEEEEETTE-EEEEEEEGGGCCCHHHHHHHHHHHTTC------TTCCCEEEEECTTSCEEECCSH
T ss_pred EEEEEECCCE-EEEEECCCCCCCCHHHHHHHHHHHCCC------CCCCEEEEEECCCCCEEEECCH
T ss_conf 9998633880-467672688787889999999997578------9987899998899997614588
No 7
>1q1o_A Cell division control protein 24; PB1 domain, PCCR, PC motif, OPCA motif, yeast, cell polarity, protein-protein interaction; NMR {Saccharomyces cerevisiae} SCOP: d.15.2.2 PDB: 2kfj_A 2kfk_B
Probab=1.00 E-value=1 Score=26.51 Aligned_cols=77 Identities=13% Similarity=0.222 Sum_probs=53.6
Q ss_pred CCCCCEEEEEECCC----EEC--CCCCCCCCCCHHHHHHHHHHHHCCCCCCCCCCCCCEEEEECCCCCEEEECC-CCCCH
Q ss_conf 99775479965461----101--100556978969999999987601344469999808999718998678357-88723
Q 003580 676 PGKRSCTKVHKQGS----LVG--RAIDLWRLNGYNDLLSELEHLFNMEGLLRDPAKGWRILYTDSENDVMVVGD-DPWHS 748 (809)
Q Consensus 676 ~~~r~~vKV~m~G~----~vG--RkvDL~~~~~Y~eL~~~Le~MF~~~g~L~~~~~~w~ivY~D~EGD~mLVGD-~PW~~ 748 (809)
+.+..-+||+-+.. .++ |.|=+..--+|++|+..+.+-|.+.- -.+-....++-|+|.|||+...++ +=|+
T Consensus 2 ~~~sikVKv~y~~~~~~~~~~d~~~i~V~~~i~f~~L~~kI~~Kl~~~~-~~~i~~~~klkYkDEdGD~Vtl~sddDl~- 79 (98)
T 1q1o_A 2 PLGSILFRISYNNNSNNTSSSEIFTLLVEKVWNFDDLIMAINSKISNTH-NNNISPITKIKYQDEDGDFVVLGSDEDWN- 79 (98)
T ss_dssp CSSCEEEEEEECSSCSSCCCCEEEEEEECTTCCHHHHHHHHHHHHHHHC-SSCCCCCCCEEEECSSSCEEEECSHHHHH-
T ss_pred CCCCEEEEEEECCCCCCCCCCCEEEEEECCCCCHHHHHHHHHHHHCCCC-CCCCCCEEEEEEECCCCCEEEECCHHHHH-
T ss_conf 8751899999357656666686799996699989999999999976786-54546504799996999988772889999-
Q ss_pred HHHCCC
Q ss_conf 454021
Q 003580 749 EFCNEV 754 (809)
Q Consensus 749 ~F~~~V 754 (809)
+-..++
T Consensus 80 ~A~e~~ 85 (98)
T 1q1o_A 80 VAKEML 85 (98)
T ss_dssp HHHHHH
T ss_pred HHHHHH
T ss_conf 999997
No 8
>2kkc_A Sequestosome-1; P62, PB1, autophagy, ubiquitin-proteasome system, NF-KB signaling, alternative splicing, apoptosis, cytoplasm, differentiation; NMR {Rattus norvegicus} PDB: 2ktr_B
Probab=1.00 E-value=1 Score=25.06 Aligned_cols=62 Identities=21% Similarity=0.271 Sum_probs=42.5
Q ss_pred CCCEEEEEECC-----CEECC-CCCCC---------CCCCHHHHHHHHHHHHCCCCCCCCCCCCCEEEEECCCCCEEEEC
Q ss_conf 77547996546-----11011-00556---------97896999999998760134446999980899971899867835
Q 003580 678 KRSCTKVHKQG-----SLVGR-AIDLW---------RLNGYNDLLSELEHLFNMEGLLRDPAKGWRILYTDSENDVMVVG 742 (809)
Q Consensus 678 ~r~~vKV~m~G-----~~vGR-kvDL~---------~~~~Y~eL~~~Le~MF~~~g~L~~~~~~w~ivY~D~EGD~mLVG 742 (809)
...-+|++..| ..|-| ++|.. .-.+|++|...+.++|.. | ...+|++.|.|.|||+.-..
T Consensus 4 m~~~vKayl~~~~~~~~EiRRF~l~~~~~p~~~~~~~~~s~~~L~~~V~~lFp~---l--~~~~f~l~Y~DedGDlItiS 78 (102)
T 2kkc_A 4 MSLTVKAYLLGKEEAAREIRRFSFCFSPEPEAEAAAGPGPCERLLSRVAVLFPA---L--RPGGFQAHYRAERGDLVAFS 78 (102)
T ss_dssp CEEEEEEEEECSSSCEEEEEEEEEESSSCSCSSSCCSCCHHHHHHHHHHHHCTT---S--CSSCEEEEEECTTCCEEEEC
T ss_pred CEEEEEEEECCCCCCCCCEEEEEECCCCCCCCCCCCCCCCHHHHHHHHHHHCCC---C--CCCCEEEEEECCCCCEEEEC
T ss_conf 469999998167777872699883367775422244666699999999997544---5--79838999998999989764
Q ss_pred CC
Q ss_conf 78
Q 003580 743 DD 744 (809)
Q Consensus 743 D~ 744 (809)
++
T Consensus 79 sD 80 (102)
T 2kkc_A 79 SD 80 (102)
T ss_dssp SH
T ss_pred CH
T ss_conf 88
No 9
>2ktr_A Sequestosome-1; autophagy, NF-KB signaling, HOMO-oligomer, PB1 dimer, signaling protein, transport protein; NMR {Rattus norvegicus}
Probab=1.00 E-value=1 Score=24.92 Aligned_cols=62 Identities=21% Similarity=0.263 Sum_probs=42.3
Q ss_pred CCCEEEEEECC-----CEECC-CCCC---------CCCCCHHHHHHHHHHHHCCCCCCCCCCCCCEEEEECCCCCEEEEC
Q ss_conf 77547996546-----11011-0055---------697896999999998760134446999980899971899867835
Q 003580 678 KRSCTKVHKQG-----SLVGR-AIDL---------WRLNGYNDLLSELEHLFNMEGLLRDPAKGWRILYTDSENDVMVVG 742 (809)
Q Consensus 678 ~r~~vKV~m~G-----~~vGR-kvDL---------~~~~~Y~eL~~~Le~MF~~~g~L~~~~~~w~ivY~D~EGD~mLVG 742 (809)
...-+|++..| ..|-| ++|- ..-.+|++|...+.++|.. | ...+|++.|.|.|||+.-..
T Consensus 19 ~~l~vKayl~~~~~~~~EIRRF~l~~~~~p~~~~~~~~~s~~~L~~kV~~lFp~---L--~~~~f~l~YkDEdGDlItIS 93 (117)
T 2ktr_A 19 GSLTVKAYLLGKEEAAREIRRFSFCFSPEPEAEAAAGPGPSERLLSRVAVLFPA---L--RPGGFQAHYRAERGDLVAFS 93 (117)
T ss_dssp -CEEEEEEEECSSSCEEEEEEEEECSSSCSCSSSCCSCCHHHHHHHHHHHHCTT---S--CSSCEEEEEECTTCCEEEEC
T ss_pred CCEEEEEEEECCCCCCCCEEEEEECCCCCCCCCCCCCCCCHHHHHHHHHHHCCC---C--CCCCEEEEEECCCCCEEEEC
T ss_conf 528999998067778872799884267774311245677799999999997345---5--89838999998999989763
Q ss_pred CC
Q ss_conf 78
Q 003580 743 DD 744 (809)
Q Consensus 743 D~ 744 (809)
.+
T Consensus 94 sD 95 (117)
T 2ktr_A 94 SD 95 (117)
T ss_dssp SH
T ss_pred CH
T ss_conf 88
No 10
>1pqs_A Cell division control protein 24; alpha and beta protein, cell cycle; NMR {Saccharomyces cerevisiae} SCOP: d.15.2.2 PDB: 1tz1_A
Probab=1.00 E-value=1 Score=22.37 Aligned_cols=59 Identities=15% Similarity=0.308 Sum_probs=41.1
Q ss_pred CCCCCCCCCHHHHHHHHHHHHCCCCCCCCCCCCCEEEEECCCCCEEEECC-CCCCHHHHCCC
Q ss_conf 00556978969999999987601344469999808999718998678357-88723454021
Q 003580 694 AIDLWRLNGYNDLLSELEHLFNMEGLLRDPAKGWRILYTDSENDVMVVGD-DPWHSEFCNEV 754 (809)
Q Consensus 694 kvDL~~~~~Y~eL~~~Le~MF~~~g~L~~~~~~w~ivY~D~EGD~mLVGD-~PW~~~F~~~V 754 (809)
.|=...--+|++|+..+.+-|... ...+.....++-|.|.|||+...++ +=|+ +=..++
T Consensus 5 ~i~V~~~i~f~~L~~kI~~kl~~~-~~~~~~~~~~lkYkDEdGD~Vti~sddDl~-~A~~~~ 64 (77)
T 1pqs_A 5 TLLVEKVWNFDDLIMAINSKISNT-HNNNISPITKIKYQDEDGDFVVLGSDEDWN-VAKEML 64 (77)
T ss_dssp EEECTTCCCSHHHHHHHHHHTTTT-TSSCSCSTTCCEEEETTTEEEECCSTTHHH-HHHHHH
T ss_pred EEEECCCCCHHHHHHHHHHHHCCC-CCCCCCCEEEEEEECCCCCEEEECCHHHHH-HHHHHH
T ss_conf 999679998999999999997466-564656506899995899998773889999-999997
Done!