Query 003581
Match_columns 809
No_of_seqs 403 out of 1654
Neff 4.9
Searched_HMMs 46136
Date Fri Mar 29 02:08:50 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/003581.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/003581hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG1718 Dual specificity phosp 100.0 1.2E-29 2.7E-34 248.2 14.7 144 121-265 15-158 (198)
2 smart00195 DSPc Dual specifici 100.0 6.7E-29 1.4E-33 235.3 17.7 138 123-261 1-138 (138)
3 KOG1716 Dual specificity phosp 100.0 1.1E-28 2.5E-33 263.2 18.7 147 120-266 72-220 (285)
4 cd00127 DSPc Dual specificity 99.9 8.2E-27 1.8E-31 219.6 17.0 138 122-259 1-139 (139)
5 PF00782 DSPc: Dual specificit 99.9 4.5E-27 9.8E-32 220.8 13.9 131 130-261 1-133 (133)
6 KOG1717 Dual specificity phosp 99.9 5E-27 1.1E-31 243.1 12.6 142 123-265 172-315 (343)
7 KOG0443 Actin regulatory prote 99.9 3E-23 6.6E-28 239.1 11.4 143 269-421 513-657 (827)
8 PRK12361 hypothetical protein; 99.9 2.4E-22 5.2E-27 231.7 17.5 141 121-262 93-237 (547)
9 PTZ00242 protein tyrosine phos 99.8 1.5E-18 3.3E-23 172.4 15.2 144 120-265 8-161 (166)
10 KOG1719 Dual specificity phosp 99.7 1.3E-17 2.9E-22 162.1 12.3 140 125-264 27-172 (183)
11 PTZ00393 protein tyrosine phos 99.7 4.5E-17 9.8E-22 169.6 15.4 122 139-263 107-230 (241)
12 KOG0443 Actin regulatory prote 99.7 4E-17 8.6E-22 189.1 9.2 170 273-460 139-321 (827)
13 KOG1720 Protein tyrosine phosp 99.5 9.6E-14 2.1E-18 141.3 13.7 117 142-260 88-206 (225)
14 COG2453 CDC14 Predicted protei 99.5 1.2E-13 2.6E-18 138.8 12.2 94 165-261 70-164 (180)
15 smart00262 GEL Gelsolin homolo 99.4 2.5E-13 5.4E-18 120.9 8.7 75 293-367 14-89 (90)
16 KOG0444 Cytoskeletal regulator 99.3 2.6E-13 5.7E-18 154.4 -0.2 165 246-421 1010-1188(1255)
17 PF05706 CDKN3: Cyclin-depende 99.3 1.2E-11 2.5E-16 123.1 8.7 107 128-235 41-168 (168)
18 KOG0444 Cytoskeletal regulator 99.3 5.5E-12 1.2E-16 143.8 6.8 149 269-422 618-777 (1255)
19 PF03162 Y_phosphatase2: Tyros 99.2 2.1E-11 4.6E-16 121.5 8.6 117 121-240 5-129 (164)
20 TIGR01244 conserved hypothetic 99.2 3.1E-10 6.7E-15 109.4 13.3 117 123-246 2-129 (135)
21 KOG0445 Actin regulatory prote 99.1 8.9E-11 1.9E-15 134.3 9.4 151 272-452 644-799 (919)
22 PF00626 Gelsolin: Gelsolin re 99.1 7E-11 1.5E-15 101.3 4.9 69 294-362 7-76 (76)
23 KOG2836 Protein tyrosine phosp 98.9 2.8E-08 6.2E-13 95.7 12.6 118 139-262 32-153 (173)
24 smart00012 PTPc_DSPc Protein t 98.8 2.4E-08 5.1E-13 88.8 10.3 84 170-253 5-97 (105)
25 smart00404 PTPc_motif Protein 98.8 2.4E-08 5.1E-13 88.8 10.3 84 170-253 5-97 (105)
26 PF04273 DUF442: Putative phos 98.7 4.8E-08 1E-12 91.7 8.9 92 123-220 2-104 (110)
27 PLN02727 NAD kinase 98.6 1.2E-07 2.6E-12 113.9 11.2 99 129-230 262-370 (986)
28 cd00047 PTPc Protein tyrosine 98.4 1.4E-06 3E-11 89.9 9.6 75 176-250 139-220 (231)
29 COG5350 Predicted protein tyro 98.3 2.6E-06 5.7E-11 83.9 9.4 111 141-252 25-145 (172)
30 smart00194 PTPc Protein tyrosi 98.3 3.2E-06 7E-11 88.9 9.5 77 176-252 167-249 (258)
31 PF13350 Y_phosphatase3: Tyros 98.2 6.3E-06 1.4E-10 81.5 10.1 107 129-236 20-158 (164)
32 KOG0445 Actin regulatory prote 98.1 3.7E-06 7.9E-11 97.4 6.7 99 269-373 220-325 (919)
33 KOG1572 Predicted protein tyro 98.1 1.6E-05 3.5E-10 83.3 10.7 116 122-240 59-186 (249)
34 COG3453 Uncharacterized protei 98.0 5.5E-05 1.2E-09 72.1 11.8 111 122-240 2-124 (130)
35 KOG2283 Clathrin coat dissocia 98.0 3.1E-05 6.7E-10 88.2 10.5 120 119-242 11-149 (434)
36 PRK15375 pathogenicity island 97.9 4E-05 8.6E-10 88.0 10.5 88 175-262 431-529 (535)
37 PF04179 Init_tRNA_PT: Initiat 97.9 9.1E-05 2E-09 84.9 12.0 105 125-229 291-404 (451)
38 PF00102 Y_phosphatase: Protei 97.6 0.00021 4.6E-09 72.7 9.3 64 188-251 153-225 (235)
39 PF14566 PTPlike_phytase: Inos 97.6 9.9E-05 2.2E-09 72.7 6.6 59 165-225 90-148 (149)
40 COG2365 Protein tyrosine/serin 97.5 0.00016 3.5E-09 76.9 6.1 122 128-249 53-184 (249)
41 PHA02742 protein tyrosine phos 97.4 0.00045 9.8E-09 75.4 9.0 48 201-248 229-281 (303)
42 KOG2386 mRNA capping enzyme, g 97.4 0.0003 6.5E-09 79.0 7.3 91 165-255 84-178 (393)
43 PHA02746 protein tyrosine phos 97.3 0.00066 1.4E-08 74.8 8.9 48 202-249 248-300 (323)
44 PHA02747 protein tyrosine phos 97.3 0.00083 1.8E-08 73.7 8.9 48 202-249 230-282 (312)
45 PHA02740 protein tyrosine phos 97.3 0.00086 1.9E-08 73.2 9.0 56 201-256 221-284 (298)
46 PHA02738 hypothetical protein; 97.0 0.0029 6.2E-08 69.8 9.7 49 201-249 227-280 (320)
47 KOG0792 Protein tyrosine phosp 96.9 0.0027 5.9E-08 77.8 9.2 87 176-262 1037-1133(1144)
48 COG5599 PTP2 Protein tyrosine 96.1 0.012 2.6E-07 63.3 6.4 46 176-225 194-242 (302)
49 KOG0789 Protein tyrosine phosp 95.7 0.03 6.4E-07 62.7 8.3 50 200-249 298-353 (415)
50 KOG0790 Protein tyrosine phosp 95.7 0.013 2.7E-07 66.6 4.9 47 200-246 450-504 (600)
51 KOG0260 RNA polymerase II, lar 94.6 0.25 5.3E-06 61.9 11.9 9 65-73 772-780 (1605)
52 KOG0791 Protein tyrosine phosp 93.8 0.21 4.6E-06 56.0 8.3 62 200-261 286-352 (374)
53 PF14671 DSPn: Dual specificit 93.4 0.32 6.9E-06 48.2 8.1 101 126-242 4-111 (141)
54 KOG1984 Vesicle coat complex C 92.8 0.29 6.4E-06 59.7 8.1 35 294-328 880-914 (1007)
55 KOG0793 Protein tyrosine phosp 89.8 1.1 2.4E-05 53.9 8.4 60 201-260 927-993 (1004)
56 PF00626 Gelsolin: Gelsolin re 89.7 0.27 5.8E-06 42.0 2.7 32 718-756 5-36 (76)
57 COG5028 Vesicle coat complex C 87.9 1.1 2.4E-05 54.4 7.0 32 297-328 738-769 (861)
58 KOG4228 Protein tyrosine phosp 86.6 0.87 1.9E-05 57.2 5.3 56 189-244 714-778 (1087)
59 smart00262 GEL Gelsolin homolo 85.3 0.74 1.6E-05 41.0 2.9 28 722-756 17-44 (90)
60 PTZ00395 Sec24-related protein 83.8 3.8 8.1E-05 52.9 8.9 35 294-328 1433-1467(1560)
61 KOG4471 Phosphatidylinositol 3 82.5 2.1 4.6E-05 50.8 5.8 39 187-225 360-399 (717)
62 KOG1985 Vesicle coat complex C 77.7 4.8 0.00011 49.5 6.8 30 297-326 765-794 (887)
63 KOG4228 Protein tyrosine phosp 70.7 4.1 8.8E-05 51.6 4.0 45 201-245 1018-1067(1087)
64 PF06602 Myotub-related: Myotu 69.5 9.7 0.00021 43.0 6.3 23 198-220 228-250 (353)
65 cd01518 RHOD_YceA Member of th 65.6 17 0.00038 32.6 6.1 28 199-229 59-86 (101)
66 KOG1089 Myotubularin-related p 61.6 12 0.00026 44.8 5.3 33 193-225 335-369 (573)
67 COG0607 PspE Rhodanese-related 54.2 27 0.00058 31.2 5.3 69 143-226 14-84 (110)
68 PLN00162 transport protein sec 51.8 42 0.00092 41.8 8.0 70 295-364 635-720 (761)
69 PLN02160 thiosulfate sulfurtra 44.8 31 0.00066 33.6 4.3 30 198-230 78-107 (136)
70 cd01533 4RHOD_Repeat_2 Member 42.8 45 0.00098 30.4 4.9 27 200-229 65-91 (109)
71 PRK01415 hypothetical protein; 39.5 54 0.0012 35.6 5.6 25 198-224 168-192 (247)
72 PF00581 Rhodanese: Rhodanese- 38.2 1.1E+02 0.0024 27.1 6.6 82 146-230 10-98 (113)
73 smart00400 ZnF_CHCC zinc finge 37.1 31 0.00067 28.5 2.6 32 205-238 23-54 (55)
74 cd01448 TST_Repeat_1 Thiosulfa 34.1 57 0.0012 30.2 4.2 31 198-230 76-106 (122)
75 PF03668 ATP_bind_2: P-loop AT 33.6 50 0.0011 36.6 4.2 19 203-221 244-262 (284)
76 cd01528 RHOD_2 Member of the R 31.8 92 0.002 27.9 5.0 28 200-230 57-84 (101)
77 PRK10886 DnaA initiator-associ 29.3 1.1E+02 0.0023 32.1 5.6 37 183-222 23-59 (196)
78 PF03861 ANTAR: ANTAR domain; 28.2 82 0.0018 26.1 3.7 26 216-241 15-40 (56)
79 cd01523 RHOD_Lact_B Member of 28.2 60 0.0013 29.0 3.2 28 199-229 59-86 (100)
80 PF01807 zf-CHC2: CHC2 zinc fi 28.2 55 0.0012 30.2 3.0 37 205-243 54-90 (97)
81 PRK05416 glmZ(sRNA)-inactivati 28.1 59 0.0013 35.9 3.7 37 185-221 222-265 (288)
82 TIGR03865 PQQ_CXXCW PQQ-depend 27.7 66 0.0014 32.3 3.7 30 199-230 114-143 (162)
83 cd01520 RHOD_YbbB Member of th 26.9 1E+02 0.0022 29.2 4.7 30 198-229 83-112 (128)
84 cd01522 RHOD_1 Member of the R 26.2 92 0.002 29.1 4.2 20 198-218 61-80 (117)
85 PRK05728 DNA polymerase III su 26.2 81 0.0018 31.1 3.9 26 185-210 13-38 (142)
86 PRK05320 rhodanese superfamily 26.0 1.1E+02 0.0023 33.3 5.1 24 200-225 174-197 (257)
87 PRK00142 putative rhodanese-re 25.7 1E+02 0.0022 34.4 5.0 27 200-229 170-196 (314)
88 PRK14116 gpmA phosphoglyceromu 24.9 1.6E+02 0.0034 31.0 6.1 51 179-235 148-202 (228)
89 KOG0235 Phosphoglycerate mutas 23.6 2.4E+02 0.0052 30.2 7.0 52 179-236 130-185 (214)
90 PF05763 DUF835: Protein of un 23.4 1.8E+02 0.0039 28.7 5.7 51 182-247 59-109 (136)
91 COG2927 HolC DNA polymerase II 22.1 98 0.0021 31.2 3.6 22 189-210 17-38 (144)
92 PRK06646 DNA polymerase III su 21.4 1.1E+02 0.0024 30.9 3.9 27 185-211 13-39 (154)
93 PF04364 DNA_pol3_chi: DNA pol 21.2 97 0.0021 30.4 3.4 24 187-210 15-38 (137)
94 cd01534 4RHOD_Repeat_3 Member 20.7 1.2E+02 0.0025 27.0 3.5 27 200-229 55-81 (95)
No 1
>KOG1718 consensus Dual specificity phosphatase [Defense mechanisms]
Probab=99.96 E-value=1.2e-29 Score=248.20 Aligned_cols=144 Identities=32% Similarity=0.513 Sum_probs=135.8
Q ss_pred ccceeecCCeEECChhhhcCHHHHHHCCCcEEEEcccCCCCCccCCCcEEEEEEccCCCCCchHHHHHHHHHHHHHHHhc
Q 003581 121 KECSRIADHIYLGSDAVAKNRGILRQNGITHVLNCVGFVCPEYFKGDLVYKTLWLQDSPSEDITSILYDVFDYFEDVREQ 200 (809)
Q Consensus 121 ~~iSeI~p~LYLGs~~~A~d~e~Lk~lGIT~VINL~~e~~p~~~~~~i~yl~IpI~D~~~edL~~~L~eav~fIe~a~~k 200 (809)
..+++|++.|||++-..|.+..+|+++|||+|||.+.+. |+..-.++.|..+|+.|.+...+.++|+.+.+.|+....+
T Consensus 15 ~~~SqIt~sLfl~~GvaA~~k~~l~~~~It~IiNat~E~-pn~~l~~~qy~kv~~~D~p~~~l~~hfD~vAD~I~~v~~~ 93 (198)
T KOG1718|consen 15 GGMSQITPSLFLSNGVAANDKLLLKKRKITCIINATTEV-PNTSLPDIQYMKVPLEDTPQARLYDHFDPVADKIHSVIMR 93 (198)
T ss_pred cchhhcCcceeEeccccccCHHHHHhcCceEEEEcccCC-CCccCCCceeEEEEcccCCcchhhhhhhHHHHHHHHHHhc
Confidence 348899999999988888999999999999999987655 5666788999999999999999999999999999999999
Q ss_pred CCEEEEEcCCCCchHHHHHHHHHHhhcCCCHHHHHHHHHHHcCccccChhhHHHHHHHHHHhccC
Q 003581 201 GGRVFVHCCQGVSRSTSLVIAYLMWREGQSFEDAFQYVKAARGVTNPNMGFACQLLLCQKRVHAM 265 (809)
Q Consensus 201 GgrVLVHC~aGvSRS~tVVIAYLM~~~gmSleeAl~~VRs~RP~I~PN~gFa~QLlq~EkrL~~~ 265 (809)
||++||||.+|+|||+++|+||||++.+|++.||+.++|++||+|+||.||..||..||.++++.
T Consensus 94 gG~TLvHC~AGVSRSAsLClAYLmK~~~msLreAy~~vKa~RpiIRPN~GFw~QLi~YE~qL~g~ 158 (198)
T KOG1718|consen 94 GGKTLVHCVAGVSRSASLCLAYLMKYHCMSLREAYHWVKARRPIIRPNVGFWRQLIDYEQQLFGN 158 (198)
T ss_pred CCcEEEEEccccchhHHHHHHHHHHHccchHHHHHHHHHhhCceeCCCccHHHHHHHHHHHhcCC
Confidence 99999999999999999999999999999999999999999999999999999999999999753
No 2
>smart00195 DSPc Dual specificity phosphatase, catalytic domain.
Probab=99.96 E-value=6.7e-29 Score=235.30 Aligned_cols=138 Identities=38% Similarity=0.626 Sum_probs=128.9
Q ss_pred ceeecCCeEECChhhhcCHHHHHHCCCcEEEEcccCCCCCccCCCcEEEEEEccCCCCCchHHHHHHHHHHHHHHHhcCC
Q 003581 123 CSRIADHIYLGSDAVAKNRGILRQNGITHVLNCVGFVCPEYFKGDLVYKTLWLQDSPSEDITSILYDVFDYFEDVREQGG 202 (809)
Q Consensus 123 iSeI~p~LYLGs~~~A~d~e~Lk~lGIT~VINL~~e~~p~~~~~~i~yl~IpI~D~~~edL~~~L~eav~fIe~a~~kGg 202 (809)
+++|.|+||+|+.+.+.+.+.|+++||++||||+.+.. .+...++.|+++|+.|....++...++.+++||+.++++|+
T Consensus 1 ~~~I~~~l~~G~~~~~~~~~~l~~~gi~~Vi~l~~~~~-~~~~~~~~~~~ipi~D~~~~~~~~~~~~~~~~i~~~~~~~~ 79 (138)
T smart00195 1 PSEILPHLYLGSYSSALNLALLKKLGITHVINVTNEVP-NLNKKGFTYLGVPILDNTETKISPYFPEAVEFIEDAEKKGG 79 (138)
T ss_pred CcEEeCCeEECChhHcCCHHHHHHcCCCEEEEccCCCC-CCCCCCCEEEEEECCCCCCCChHHHHHHHHHHHHHHhcCCC
Confidence 46899999999999999999999999999999976543 34567899999999998788888999999999999999999
Q ss_pred EEEEEcCCCCchHHHHHHHHHHhhcCCCHHHHHHHHHHHcCccccChhhHHHHHHHHHH
Q 003581 203 RVFVHCCQGVSRSTSLVIAYLMWREGQSFEDAFQYVKAARGVTNPNMGFACQLLLCQKR 261 (809)
Q Consensus 203 rVLVHC~aGvSRS~tVVIAYLM~~~gmSleeAl~~VRs~RP~I~PN~gFa~QLlq~Ekr 261 (809)
+|||||.+|+|||+++++||||+.+||++++|+++|+++||.+.||.+|..||.+|+++
T Consensus 80 ~VlVHC~~G~~RS~~v~~~yl~~~~~~~~~~A~~~v~~~R~~~~p~~~~~~qL~~~e~~ 138 (138)
T smart00195 80 KVLVHCQAGVSRSATLIIAYLMKYRNLSLNDAYDFVKDRRPIISPNFGFLRQLIEYERK 138 (138)
T ss_pred eEEEECCCCCchHHHHHHHHHHHHhCCCHHHHHHHHHHHCCccCCCHhHHHHHHHHhhC
Confidence 99999999999999999999999999999999999999999999999999999999863
No 3
>KOG1716 consensus Dual specificity phosphatase [Defense mechanisms]
Probab=99.96 E-value=1.1e-28 Score=263.24 Aligned_cols=147 Identities=41% Similarity=0.670 Sum_probs=135.7
Q ss_pred cccceeecCCeEECChhhhcCHHHHHHCCCcEEEEcccCCCCC-ccC-CCcEEEEEEccCCCCCchHHHHHHHHHHHHHH
Q 003581 120 DKECSRIADHIYLGSDAVAKNRGILRQNGITHVLNCVGFVCPE-YFK-GDLVYKTLWLQDSPSEDITSILYDVFDYFEDV 197 (809)
Q Consensus 120 ~~~iSeI~p~LYLGs~~~A~d~e~Lk~lGIT~VINL~~e~~p~-~~~-~~i~yl~IpI~D~~~edL~~~L~eav~fIe~a 197 (809)
...+.+|.|+||+|+..++.+.+.|+++||+||||+....... +.. ..+.|+++++.|.+..+|..+|+++++||+.+
T Consensus 72 ~~~~~~i~p~l~lg~~~~~~~~~~l~~~~it~vln~~~~~~~~~~~~~~~~~y~~i~~~D~~~~~i~~~~~~~~~fI~~a 151 (285)
T KOG1716|consen 72 GNPIVEILPNLYLGSQGVASDPDLLKKLGITHVLNVSSSCPNPRFLKEQGIKYLRIPVEDNPSTDILQHFPEAISFIEKA 151 (285)
T ss_pred cCCceeecCCceecCcccccchhhHHHcCCCEEEEecccCCccccccccCceEEeccccCCccccHHHHHHHHHHHHHHH
Confidence 4568899999999999999999999999999999987643332 233 38899999999999999999999999999999
Q ss_pred HhcCCEEEEEcCCCCchHHHHHHHHHHhhcCCCHHHHHHHHHHHcCccccChhhHHHHHHHHHHhccCC
Q 003581 198 REQGGRVFVHCCQGVSRSTSLVIAYLMWREGQSFEDAFQYVKAARGVTNPNMGFACQLLLCQKRVHAMP 266 (809)
Q Consensus 198 ~~kGgrVLVHC~aGvSRS~tVVIAYLM~~~gmSleeAl~~VRs~RP~I~PN~gFa~QLlq~EkrL~~~p 266 (809)
+.+|++|||||.+|+|||++++|||||++++|++++|+++|+.+||.+.||.||+.||++|++.+....
T Consensus 152 ~~~~~~vlVHC~~GvSRSat~viAYlM~~~~~~l~~A~~~vk~~R~~i~PN~gf~~QL~~~e~~l~~~~ 220 (285)
T KOG1716|consen 152 REKGGKVLVHCQAGVSRSATLVIAYLMKYEGLSLEDAYELVKSRRPIISPNFGFLRQLLEFEKRLSKKS 220 (285)
T ss_pred HhCCCeEEEEcCCccchhHHHHHHHHHHHcCCCHHHHHHHHHHhCCccCCCHHHHHHHHHHHHhhccCC
Confidence 999999999999999999999999999999999999999999999999999999999999999987643
No 4
>cd00127 DSPc Dual specificity phosphatases (DSP); Ser/Thr and Tyr protein phosphatases. Structurally similar to tyrosine-specific phosphatases but with a shallower active site cleft and a distinctive active site signature motif, HCxxGxxR. Characterized as VHR- or Cdc25-like.
Probab=99.95 E-value=8.2e-27 Score=219.61 Aligned_cols=138 Identities=42% Similarity=0.676 Sum_probs=128.1
Q ss_pred cceeecCCeEECChhhhcCHHHHHHCCCcEEEEcccCCCC-CccCCCcEEEEEEccCCCCCchHHHHHHHHHHHHHHHhc
Q 003581 122 ECSRIADHIYLGSDAVAKNRGILRQNGITHVLNCVGFVCP-EYFKGDLVYKTLWLQDSPSEDITSILYDVFDYFEDVREQ 200 (809)
Q Consensus 122 ~iSeI~p~LYLGs~~~A~d~e~Lk~lGIT~VINL~~e~~p-~~~~~~i~yl~IpI~D~~~edL~~~L~eav~fIe~a~~k 200 (809)
++++|.++||+|+.+.+.+.+.|+++||++||||+..... .....++.|+++|+.|....++...++.+++||+..+++
T Consensus 1 ~~~~i~~~l~~g~~~~~~d~~~L~~~gi~~VI~l~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~~~~i~~~~~~ 80 (139)
T cd00127 1 PLSEITPGLYLGSYPAASDKELLKKLGITHVLNVAKEVPNENLFLSDFNYLYVPILDLPSQDISKYFDEAVDFIDDAREK 80 (139)
T ss_pred CcCEEcCCeEECChhHhcCHHHHHHcCCCEEEEcccCCCCcccCCCCceEEEEEceeCCCCChHHHHHHHHHHHHHHHhc
Confidence 3789999999999999999999999999999999865432 344578999999999998888888999999999999999
Q ss_pred CCEEEEEcCCCCchHHHHHHHHHHhhcCCCHHHHHHHHHHHcCccccChhhHHHHHHHH
Q 003581 201 GGRVFVHCCQGVSRSTSLVIAYLMWREGQSFEDAFQYVKAARGVTNPNMGFACQLLLCQ 259 (809)
Q Consensus 201 GgrVLVHC~aGvSRS~tVVIAYLM~~~gmSleeAl~~VRs~RP~I~PN~gFa~QLlq~E 259 (809)
|++|||||.+|+|||+++++||||+.++|++++|+++||++||.+.||.+|..||++|+
T Consensus 81 ~~~vlVHC~~G~~Rs~~~~~~~l~~~~~~~~~~a~~~vr~~r~~~~~~~~~~~~l~~~~ 139 (139)
T cd00127 81 GGKVLVHCLAGVSRSATLVIAYLMKTLGLSLREAYEFVKSRRPIISPNAGFMRQLKEYE 139 (139)
T ss_pred CCcEEEECCCCCchhHHHHHHHHHHHcCCCHHHHHHHHHHHCCccCCCHHHHHHHHHhC
Confidence 99999999999999999999999999999999999999999999999999999999985
No 5
>PF00782 DSPc: Dual specificity phosphatase, catalytic domain; InterPro: IPR000340 Protein tyrosine (pTyr) phosphorylation is a common post-translational modification which can create novel recognition motifs for protein interactions and cellular localisation, affect protein stability, and regulate enzyme activity. Consequently, maintaining an appropriate level of protein tyrosine phosphorylation is essential for many cellular functions. Tyrosine-specific protein phosphatases (PTPase; 3.1.3.48 from EC) catalyse the removal of a phosphate group attached to a tyrosine residue, using a cysteinyl-phosphate enzyme intermediate. These enzymes are key regulatory components in signal transduction pathways (such as the MAP kinase pathway) and cell cycle control, and are important in the control of cell growth, proliferation, differentiation and transformation [, ]. The PTP superfamily can be divided into four subfamilies []: (1) pTyr-specific phosphatases (2) dual specificity phosphatases (dTyr and dSer/dThr) (3) Cdc25 phosphatases (dTyr and/or dThr) (4) LMW (low molecular weight) phosphatases Based on their cellular localisation, PTPases are also classified as: Receptor-like, which are transmembrane receptors that contain PTPase domains [] Non-receptor (intracellular) PTPases [] All PTPases carry the highly conserved active site motif C(X)5R (PTP signature motif), employ a common catalytic mechanism, and share a similar core structure made of a central parallel beta-sheet with flanking alpha-helices containing a beta-loop-alpha-loop that encompasses the PTP signature motif []. Functional diversity between PTPases is endowed by regulatory domains and subunits. This entry represents dual specificity protein-tyrosine phosphatases. Ser/Thr and Tyr dual specificity phosphatases are a group of enzymes with both Ser/Thr (3.1.3.16 from EC) and tyrosine specific protein phosphatase (3.1.3.48 from EC) activity able to remove both the serine/threonine or tyrosine-bound phosphate group from a wide range of phosphoproteins, including a number of enzymes which have been phosphorylated under the action of a kinase. Dual specificity protein phosphatases (DSPs) regulate mitogenic signal transduction and control the cell cycle. The crystal structure of a human DSP, vaccinia H1-related phosphatase (or VHR), has been determined at 2.1 angstrom resolution []. A shallow active site pocket in VHR allows for the hydrolysis of phosphorylated serine, threonine, or tyrosine protein residues, whereas the deeper active site of protein tyrosine phosphatases (PTPs) restricts substrate specificity to only phosphotyrosine. Positively charged crevices near the active site may explain the enzyme's preference for substrates with two phosphorylated residues. The VHR structure defines a conserved structural scaffold for both DSPs and PTPs. A "recognition region" connecting helix alpha1 to strand beta1, may determine differences in substrate specificity between VHR, the PTPs, and other DSPs. These proteins may also have inactive phosphatase domains, and dependent on the domain composition this loss of catalytic activity has different effects on protein function. Inactive single domain phosphatases can still specifically bind substrates, and protect again dephosphorylation, while the inactive domains of tandem phosphatases can be further subdivided into two classes. Those which bind phosphorylated tyrosine residues may recruit multi-phosphorylated substrates for the adjacent active domains and are more conserved, while the other class have accumulated several variable amino acid substitutions and have a complete loss of tyrosine binding capability. The second class shows a release of evolutionary constraint for the sites around the catalytic centre, which emphasises a difference in function from the first group. There is a region of higher conservation common to both classes, suggesting a new regulatory centre [].; GO: 0008138 protein tyrosine/serine/threonine phosphatase activity, 0006470 protein dephosphorylation; PDB: 2G6Z_A 1MKP_A 1YZ4_A 2P4D_A 1M3G_A 1ZZW_A 2OUD_A 2HXP_A 3LJ8_A 1OHD_A ....
Probab=99.94 E-value=4.5e-27 Score=220.83 Aligned_cols=131 Identities=37% Similarity=0.584 Sum_probs=121.9
Q ss_pred eEECChhhhcCHHHHHHCCCcEEEEcccCCCCC--ccCCCcEEEEEEccCCCCCchHHHHHHHHHHHHHHHhcCCEEEEE
Q 003581 130 IYLGSDAVAKNRGILRQNGITHVLNCVGFVCPE--YFKGDLVYKTLWLQDSPSEDITSILYDVFDYFEDVREQGGRVFVH 207 (809)
Q Consensus 130 LYLGs~~~A~d~e~Lk~lGIT~VINL~~e~~p~--~~~~~i~yl~IpI~D~~~edL~~~L~eav~fIe~a~~kGgrVLVH 207 (809)
||||+.+.+. .+.|+++||++||||+.+.... ....++.|+++|+.|....++...|+.+++||++++.+|++||||
T Consensus 1 lylG~~~~a~-~~~l~~~~I~~Vin~~~~~~~~~~~~~~~~~~~~i~~~D~~~~~~~~~~~~~~~~i~~~~~~~~~VlVH 79 (133)
T PF00782_consen 1 LYLGSYPAAS-IAFLKNLGITHVINLQEECPNPYFYKPEGIEYLRIPIDDDPEEPILEHLDQAVEFIENAISEGGKVLVH 79 (133)
T ss_dssp EEEEEHHHHC-HHHHHHTTEEEEEECSSSSSTSHHHTTTTSEEEEEEEESSTTSHGGGGHHHHHHHHHHHHHTTSEEEEE
T ss_pred CEEeCHHHHh-HHHHHHCCCCEEEEccCCCcCchhcccCCCEEEEEEecCCCCcchHHHHHHHHHhhhhhhcccceeEEE
Confidence 7999999999 9999999999999998654321 345689999999999888888899999999999999999999999
Q ss_pred cCCCCchHHHHHHHHHHhhcCCCHHHHHHHHHHHcCccccChhhHHHHHHHHHH
Q 003581 208 CCQGVSRSTSLVIAYLMWREGQSFEDAFQYVKAARGVTNPNMGFACQLLLCQKR 261 (809)
Q Consensus 208 C~aGvSRS~tVVIAYLM~~~gmSleeAl~~VRs~RP~I~PN~gFa~QLlq~Ekr 261 (809)
|.+|+|||+++++||||+.++|++++|+++|+++||.+.||.+|..||.+|+++
T Consensus 80 C~~G~~RS~~v~~ayLm~~~~~~~~~A~~~v~~~rp~~~~~~~~~~~L~~~e~~ 133 (133)
T PF00782_consen 80 CKAGLSRSGAVAAAYLMKKNGMSLEEAIEYVRSRRPQINPNPSFIRQLYEYEKK 133 (133)
T ss_dssp ESSSSSHHHHHHHHHHHHHHTSSHHHHHHHHHHHSTTSTHHHHHHHHHHHHHHH
T ss_pred eCCCcccchHHHHHHHHHHcCCCHHHHHHHHHHHCCCCCCCHHHHHHHHHhhcC
Confidence 999999999999999999999999999999999999999999999999999874
No 6
>KOG1717 consensus Dual specificity phosphatase [Defense mechanisms]
Probab=99.94 E-value=5e-27 Score=243.11 Aligned_cols=142 Identities=28% Similarity=0.553 Sum_probs=133.1
Q ss_pred ceeecCCeEECChhhhcCHHHHHHCCCcEEEEcccCCCCCccCC--CcEEEEEEccCCCCCchHHHHHHHHHHHHHHHhc
Q 003581 123 CSRIADHIYLGSDAVAKNRGILRQNGITHVLNCVGFVCPEYFKG--DLVYKTLWLQDSPSEDITSILYDVFDYFEDVREQ 200 (809)
Q Consensus 123 iSeI~p~LYLGs~~~A~d~e~Lk~lGIT~VINL~~e~~p~~~~~--~i~yl~IpI~D~~~edL~~~L~eav~fIe~a~~k 200 (809)
+.+|+|+||||+..++.|.+.|+++||++|||++... |+.|++ ++.|+.||+.|....++..+|++|+.||++++.+
T Consensus 172 PV~ilp~LYLg~a~ds~NldvLkk~gI~yviNVTpnl-pn~fe~~g~f~YkqipisDh~Sqnls~ffpEAIsfIdeArsk 250 (343)
T KOG1717|consen 172 PVEILPNLYLGCAKDSTNLDVLKKYGIKYVINVTPNL-PNNFENNGEFIYKQIPISDHASQNLSQFFPEAISFIDEARSK 250 (343)
T ss_pred chhhccchhcccccccccHHHHHhcCceEEEecCCCC-cchhhcCCceeEEeeeccchhhhhhhhhhHHHHHHHHHhhcc
Confidence 5689999999999999999999999999999987644 665554 6899999999999999999999999999999999
Q ss_pred CCEEEEEcCCCCchHHHHHHHHHHhhcCCCHHHHHHHHHHHcCccccChhhHHHHHHHHHHhccC
Q 003581 201 GGRVFVHCCQGVSRSTSLVIAYLMWREGQSFEDAFQYVKAARGVTNPNMGFACQLLLCQKRVHAM 265 (809)
Q Consensus 201 GgrVLVHC~aGvSRS~tVVIAYLM~~~gmSleeAl~~VRs~RP~I~PN~gFa~QLlq~EkrL~~~ 265 (809)
+-.|||||-+|++||+||++||||++...++.+||++|+.++..|.||.+|+.||+.|++-+...
T Consensus 251 ~cgvLVHClaGISRSvTvtvaYLMqkl~lslndAyd~Vk~kksnisPNFnFMgQLldfertlgl~ 315 (343)
T KOG1717|consen 251 NCGVLVHCLAGISRSVTVTVAYLMQKLNLSLNDAYDFVKHKKSNISPNFNFMGQLLDFERTLGLE 315 (343)
T ss_pred CCcEEEeeeccccchhHHHHHHHHHHhccchhhHHHHHHHhccCCCCCcchhHHHHHHHHHhhcc
Confidence 99999999999999999999999999999999999999999999999999999999999987543
No 7
>KOG0443 consensus Actin regulatory proteins (gelsolin/villin family) [Cytoskeleton]
Probab=99.89 E-value=3e-23 Score=239.07 Aligned_cols=143 Identities=24% Similarity=0.360 Sum_probs=121.9
Q ss_pred CccccceeeecCCCCCCCccccccccCCCcccCCCCCCeEEEecCCceEEEecCCCChhhhHHHHHHHHHHHHHhhcCCc
Q 003581 269 PNSMLRIYRIAPHSSYDPLHLVPKLLNYPVAQGFDTRGAFIVLVPSAIYVWIGKNCSVMMSNRAREAANQVIRYEKAQGQ 348 (809)
Q Consensus 269 p~s~~RLYRV~g~S~~dpr~LVpK~eV~~s~sSLNSrDvFILdtps~IYVWiGk~ss~~er~~A~~aA~qI~~~e~~~~~ 348 (809)
+..-.+||||+|..+++.+++ ||++.+++|||.|||||++++.+|+|+|++|+. .++++|..+..... ..+
T Consensus 513 ~~~~t~LFqV~Gt~~~n~kAv----eV~~~A~SLNSsd~fvL~t~s~~ylW~G~gss~----~e~e~A~~v~~~l~-~~~ 583 (827)
T KOG0443|consen 513 PAPSTRLFQVQGTGPSNTKAV----EVPAVASSLNSSDCFVLKTGSSVYLWCGKGSSG----DEREMAKRVLDLLK-RCQ 583 (827)
T ss_pred CCCceEEEEEeccCcccceeE----eeccccccccccceEEEecCCeEEEEeCCCCCH----HHHHHHHHHHHHHh-cCC
Confidence 344579999999999999887 999999999999999999999999999999999 56666665555543 245
Q ss_pred EEEccCCCChhHHHHHhcCCCCCCCCC-ccccccCCceeeEeecCCccEE-EeccCCCCCCCCCccchhhhccCC
Q 003581 349 ITSIKEGEEPLEFWDALVRGQFFADGC-NKEEVKNEQVSFSGSNKIATLM-QDGAGEIDEYDLDFELFHKALDGG 421 (809)
Q Consensus 349 I~vV~EG~Ep~eFW~aLGGk~~y~~~~-~~~~~~~~pRLF~cSnasG~f~-eE~~~pf~Q~DLd~e~v~~~~~g~ 421 (809)
.+.|.||+||++||++|||+.+|+... ........||||.|++.+|.|+ +|+. .|+|+||++||||.+++|.
T Consensus 584 ~~~v~EG~Ep~~FWe~LGGk~~Y~~sk~~~~~~~~~PrLF~Cs~~~g~f~~~EI~-~F~QdDL~tdDi~lLDt~~ 657 (827)
T KOG0443|consen 584 STAVKEGSEPDEFWELLGGKAEYPSSKRLEEKPERDPRLFSCSNKTGSFVVEEIY-NFTQDDLMTDDIMLLDTWS 657 (827)
T ss_pred hhhhhcCCCchhhHHHcCCCCCCCcCccccccCCCCCcEEEEEecCCcEEEEEec-CcchhhccccceEEEecCc
Confidence 678999999999999999999999844 4444578899999999999999 8886 9999999999998665443
No 8
>PRK12361 hypothetical protein; Provisional
Probab=99.88 E-value=2.4e-22 Score=231.69 Aligned_cols=141 Identities=21% Similarity=0.299 Sum_probs=125.8
Q ss_pred ccceeecCCeEECChhhhcCHHHHHHCCCcEEEEcccCCCC---CccCCCcEEEEEEccCCCCCchHHHHHHHHHHHHHH
Q 003581 121 KECSRIADHIYLGSDAVAKNRGILRQNGITHVLNCVGFVCP---EYFKGDLVYKTLWLQDSPSEDITSILYDVFDYFEDV 197 (809)
Q Consensus 121 ~~iSeI~p~LYLGs~~~A~d~e~Lk~lGIT~VINL~~e~~p---~~~~~~i~yl~IpI~D~~~edL~~~L~eav~fIe~a 197 (809)
..+++|.|+||||+.+.+.|.+.|+++||++||||+.+... .....+++|+++|+.|...+++ .+|+++++||+++
T Consensus 93 ~~~~~I~~~l~lG~~~~a~d~~~L~~~gI~~Vldlt~E~~~~~~~~~~~~i~yl~iPi~D~~~p~~-~~l~~a~~~i~~~ 171 (547)
T PRK12361 93 PAIQKIDENLYLGCRLFPADLEKLKSNKITAILDVTAEFDGLDWSLTEEDIDYLNIPILDHSVPTL-AQLNQAINWIHRQ 171 (547)
T ss_pred CcceEEcCcEEECCCCCcccHHHHHHcCCCEEEEcccccccccccccccCceEEEeecCCCCCCcH-HHHHHHHHHHHHH
Confidence 34689999999999999999999999999999999865322 2345678999999999877764 7899999999999
Q ss_pred HhcCCEEEEEcCCCCchHHHHHHHHHHhh-cCCCHHHHHHHHHHHcCccccChhhHHHHHHHHHHh
Q 003581 198 REQGGRVFVHCCQGVSRSTSLVIAYLMWR-EGQSFEDAFQYVKAARGVTNPNMGFACQLLLCQKRV 262 (809)
Q Consensus 198 ~~kGgrVLVHC~aGvSRS~tVVIAYLM~~-~gmSleeAl~~VRs~RP~I~PN~gFa~QLlq~EkrL 262 (809)
+++|++|||||.+|+|||+++++||||++ +++++++|+++||++||.+.||.++..+|.+|.+..
T Consensus 172 ~~~~~~VlVHC~~G~sRSa~vv~ayLm~~~~~~~~~eA~~~vr~~Rp~v~~n~~q~~~l~~~~~~~ 237 (547)
T PRK12361 172 VRANKSVVVHCALGRGRSVLVLAAYLLCKDPDLTVEEVLQQIKQIRKTARLNKRQLRALEKMLEQG 237 (547)
T ss_pred HHCCCeEEEECCCCCCcHHHHHHHHHHHhccCCCHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHcC
Confidence 99999999999999999999999999977 589999999999999999999999988888887653
No 9
>PTZ00242 protein tyrosine phosphatase; Provisional
Probab=99.79 E-value=1.5e-18 Score=172.44 Aligned_cols=144 Identities=17% Similarity=0.188 Sum_probs=116.2
Q ss_pred cccceeecCCeEECChhhh----cCHHHHHHCCCcEEEEcccCCCC-Ccc-CCCcEEEEEEccCCCCCchHHHHHHHHHH
Q 003581 120 DKECSRIADHIYLGSDAVA----KNRGILRQNGITHVLNCVGFVCP-EYF-KGDLVYKTLWLQDSPSEDITSILYDVFDY 193 (809)
Q Consensus 120 ~~~iSeI~p~LYLGs~~~A----~d~e~Lk~lGIT~VINL~~e~~p-~~~-~~~i~yl~IpI~D~~~edL~~~L~eav~f 193 (809)
+..++-|..++..=..|.. .+.+.|+++||++||++++.... +.+ ..++.|+++|+.|...+.. ..+.+.+++
T Consensus 8 ~~~~~~~~~r~~~~~~P~~~~~~~~l~~L~~~gI~~Iv~l~~~~~~~~~~~~~gi~~~~~p~~D~~~P~~-~~i~~~~~~ 86 (166)
T PTZ00242 8 DRQIEYVLFKFLILDAPSPSNLPLYIKELQRYNVTHLVRVCGPTYDAELLEKNGIEVHDWPFDDGAPPPK-AVIDNWLRL 86 (166)
T ss_pred CcceeeeceEEEEecCCCcccHHHHHHHHHhCCCeEEEecCCCCCCHHHHHHCCCEEEecCCCCCCCCCH-HHHHHHHHH
Confidence 4457777787777665555 44589999999999998654321 112 3588999999998776554 567778888
Q ss_pred HHHHHhc----CCEEEEEcCCCCchHHHHHHHHHHhhcCCCHHHHHHHHHHHcCccccChhhHHHHHHHHHHhccC
Q 003581 194 FEDVREQ----GGRVFVHCCQGVSRSTSLVIAYLMWREGQSFEDAFQYVKAARGVTNPNMGFACQLLLCQKRVHAM 265 (809)
Q Consensus 194 Ie~a~~k----GgrVLVHC~aGvSRS~tVVIAYLM~~~gmSleeAl~~VRs~RP~I~PN~gFa~QLlq~EkrL~~~ 265 (809)
+++.+.. |++|+|||.+|+|||++++++|||..+++++++|+++||++||.+ .+..+..+|.+|.+.+++.
T Consensus 87 i~~~~~~~~~~g~~V~VHC~aGigRSgt~~a~yL~~~~~~s~~eAi~~vr~~R~~~-i~~~Q~~~l~~~~~~~~~~ 161 (166)
T PTZ00242 87 LDQEFAKQSTPPETIAVHCVAGLGRAPILVALALVEYGGMEPLDAVGFVREKRKGA-INQTQLQFLKKYKPRKKAA 161 (166)
T ss_pred HHHHHHhhccCCCeEEEECCCCCCHHHHHHHHHHHHhCCCCHHHHHHHHHHHCCCC-chHHHHHHHHHHHHHhccC
Confidence 8877654 999999999999999999999999999999999999999999986 5789999999999877554
No 10
>KOG1719 consensus Dual specificity phosphatase [Defense mechanisms]
Probab=99.74 E-value=1.3e-17 Score=162.15 Aligned_cols=140 Identities=18% Similarity=0.209 Sum_probs=121.6
Q ss_pred eecCCeEECChhhh-cCHHHHHHCCCcEEEEcccCCCC----C-ccCCCcEEEEEEccCCCCCchHHHHHHHHHHHHHHH
Q 003581 125 RIADHIYLGSDAVA-KNRGILRQNGITHVLNCVGFVCP----E-YFKGDLVYKTLWLQDSPSEDITSILYDVFDYFEDVR 198 (809)
Q Consensus 125 eI~p~LYLGs~~~A-~d~e~Lk~lGIT~VINL~~e~~p----~-~~~~~i~yl~IpI~D~~~edL~~~L~eav~fIe~a~ 198 (809)
+|.+++.+|-.+-. ++.+.+++.|+..||.|.+..+- + +-.-+++++.||..|.....-...+.++++||++..
T Consensus 27 ~~~~~v~~~~~~FrS~~~~~i~ke~v~gvv~~ne~yE~~a~s~~wk~~giE~L~i~T~D~~~~Ps~~~i~~aVeFi~k~a 106 (183)
T KOG1719|consen 27 RIDEFVILGAMPFRSMDVPLIKKENVGGVVTLNEPYELLAPSNLWKNYGIEFLVIPTRDYTGAPSLENIQKAVEFIHKNA 106 (183)
T ss_pred eecceEEEeecccccccchHHHhcCCCeEEEeCCchhhhhhhHHHHhccceeEEeccccccCCCCHHHHHHHHHHHHhcc
Confidence 78888889876644 67789999999999998754321 1 123478999999999877666688999999999999
Q ss_pred hcCCEEEEEcCCCCchHHHHHHHHHHhhcCCCHHHHHHHHHHHcCccccChhhHHHHHHHHHHhcc
Q 003581 199 EQGGRVFVHCCQGVSRSTSLVIAYLMWREGQSFEDAFQYVKAARGVTNPNMGFACQLLLCQKRVHA 264 (809)
Q Consensus 199 ~kGgrVLVHC~aGvSRS~tVVIAYLM~~~gmSleeAl~~VRs~RP~I~PN~gFa~QLlq~EkrL~~ 264 (809)
..|+.|||||++|++||+|+|+||||...+|+.++|+++||++||.|....+...-|.+|.+....
T Consensus 107 sLGktvYVHCKAGRtRSaTvV~cYLmq~~~wtpe~A~~~vr~iRp~VlL~~~Qw~~l~ef~~~~~~ 172 (183)
T KOG1719|consen 107 SLGKTVYVHCKAGRTRSATVVACYLMQHKNWTPEAAVEHVRKIRPRVLLRPAQWDVLKEFYKQIVA 172 (183)
T ss_pred ccCCeEEEEecCCCccchhhhhhhhhhhcCCCHHHHHHHHHhcCcceeecHHHHHHHHHHHHHHHh
Confidence 999999999999999999999999999999999999999999999999999999999998877643
No 11
>PTZ00393 protein tyrosine phosphatase; Provisional
Probab=99.73 E-value=4.5e-17 Score=169.59 Aligned_cols=122 Identities=16% Similarity=0.193 Sum_probs=105.7
Q ss_pred cCHHHHHHCCCcEEEEcccCCCCC--ccCCCcEEEEEEccCCCCCchHHHHHHHHHHHHHHHhcCCEEEEEcCCCCchHH
Q 003581 139 KNRGILRQNGITHVLNCVGFVCPE--YFKGDLVYKTLWLQDSPSEDITSILYDVFDYFEDVREQGGRVFVHCCQGVSRST 216 (809)
Q Consensus 139 ~d~e~Lk~lGIT~VINL~~e~~p~--~~~~~i~yl~IpI~D~~~edL~~~L~eav~fIe~a~~kGgrVLVHC~aGvSRS~ 216 (809)
..++.|++.||++||.+++...+. ....++.++++|+.|...++. ..+++.+++|++.++.|++|+|||.+|+|||+
T Consensus 107 ~yl~eLk~~gV~~lVrlcE~~Yd~~~~~~~GI~~~~lpipDg~aPs~-~~i~~~l~~i~~~l~~g~~VaVHC~AGlGRTG 185 (241)
T PTZ00393 107 LYIKEMKNYNVTDLVRTCERTYNDGEITSAGINVHELIFPDGDAPTV-DIVSNWLTIVNNVIKNNRAVAVHCVAGLGRAP 185 (241)
T ss_pred HHHHHHHHcCCCEEEECCCCCCCHHHHHHcCCeEEEeecCCCCCCCH-HHHHHHHHHHHHHHhcCCeEEEECCCCCCHHH
Confidence 456899999999999987644321 234589999999999887774 67888999999999999999999999999999
Q ss_pred HHHHHHHHhhcCCCHHHHHHHHHHHcCccccChhhHHHHHHHHHHhc
Q 003581 217 SLVIAYLMWREGQSFEDAFQYVKAARGVTNPNMGFACQLLLCQKRVH 263 (809)
Q Consensus 217 tVVIAYLM~~~gmSleeAl~~VRs~RP~I~PN~gFa~QLlq~EkrL~ 263 (809)
++++||||. .||++++|+++||++||.+ +|..+...|.+|+++..
T Consensus 186 tl~AayLI~-~GmspeeAI~~VR~~RPgA-In~~Q~~fL~~y~~~~~ 230 (241)
T PTZ00393 186 VLASIVLIE-FGMDPIDAIVFIRDRRKGA-INKRQLQFLKAYKKKKK 230 (241)
T ss_pred HHHHHHHHH-cCCCHHHHHHHHHHHCCCC-CCHHHHHHHHHHHHhcc
Confidence 999999997 6999999999999999987 68888888888888753
No 12
>KOG0443 consensus Actin regulatory proteins (gelsolin/villin family) [Cytoskeleton]
Probab=99.69 E-value=4e-17 Score=189.05 Aligned_cols=170 Identities=19% Similarity=0.222 Sum_probs=132.2
Q ss_pred cceeeecCCCCCCCccccccccCCCcccCCCCCCeEEEecCCceEEEecCCCChhhhHHHHHHHHHHHHHhh-cCCcEEE
Q 003581 273 LRIYRIAPHSSYDPLHLVPKLLNYPVAQGFDTRGAFIVLVPSAIYVWIGKNCSVMMSNRAREAANQVIRYEK-AQGQITS 351 (809)
Q Consensus 273 ~RLYRV~g~S~~dpr~LVpK~eV~~s~sSLNSrDvFILdtps~IYVWiGk~ss~~er~~A~~aA~qI~~~e~-~~~~I~v 351 (809)
.||||++|+ +.|+..+|+..+++||.+||||||+++.||+|+|.+++..||.+|++.|++|++.++ +.++|.+
T Consensus 139 ~rL~~~KGk------r~vr~~eV~~~~sS~N~gDvFILD~g~~i~qw~G~~Ss~~ER~KAl~~~~~IrD~e~~Gr~~V~v 212 (827)
T KOG0443|consen 139 VRLFHCKGK------RNVRVKEVPFSWSSLNHGDVFILDTGSKIYQWNGPNSSIQERAKALEVVQYIRDNERDGRCEVAV 212 (827)
T ss_pred eEEEEEccc------eeEEEEEEEeehhhcCCCcEEEEEcCCceEEEcCCcccHHHHHHHHHHHHHhhccCCCCceeEEE
Confidence 399999996 467778999999999999999999999999999999999999999999999999885 4567888
Q ss_pred ccCCCC-----hhHHHHHhcCCCC-CCCCC----ccccccCCceeeEeecCCccEE--EeccCCCCCCCCCccchhhhcc
Q 003581 352 IKEGEE-----PLEFWDALVRGQF-FADGC----NKEEVKNEQVSFSGSNKIATLM--QDGAGEIDEYDLDFELFHKALD 419 (809)
Q Consensus 352 V~EG~E-----p~eFW~aLGGk~~-y~~~~----~~~~~~~~pRLF~cSnasG~f~--eE~~~pf~Q~DLd~e~v~~~~~ 419 (809)
|++|++ ..+||..+||..+ .+... ........+|||+||+++|.+. .+..+|++|+.|+.+++|.++.
T Consensus 213 vdd~~~~~d~d~~~~~~~~~g~~~~~~~~~~~~~~~~~~s~~~kLYkVsd~~g~l~v~~va~~~l~qdlLd~~dCYILD~ 292 (827)
T KOG0443|consen 213 VDDGKEAADSDLGEFWGFVLGFAPALPKKSPDDDDEQANSAAAKLYKVSDASGGLKVPVVADGPLTKDLLDTEDCYILDC 292 (827)
T ss_pred ecCcccccCchHHHHHHhhcCcCccCCCCCcchhhhhhhccccEEEEEeccCCCccccccccchhhHHhhccCCeEEEec
Confidence 887664 4579999998766 44311 1122368899999999999998 4456679999999999999998
Q ss_pred CCCCCCeeccCCCCceeecCccccchhhhhhhccchhhhhh
Q 003581 420 GGVVPPFSVSNAGSETCVPARESGWCRLRRKFVNGLMREFV 460 (809)
Q Consensus 420 g~~~p~~~~~~~~~e~~lpa~~~~w~~~~~~~~~~~~~~~~ 460 (809)
|| =-+|+= -|.++-+- -||=|...-.||+
T Consensus 293 g~--~~IfVW-~Gr~as~~---------ERkaAm~~AeeFl 321 (827)
T KOG0443|consen 293 GG--GEIFVW-KGRQASLD---------ERKAAMSSAEEFL 321 (827)
T ss_pred CC--ceEEEE-eCCCCCHH---------HHHHHHHHHHHHH
Confidence 86 234433 13333222 2355555556777
No 13
>KOG1720 consensus Protein tyrosine phosphatase CDC14 [Defense mechanisms]
Probab=99.53 E-value=9.6e-14 Score=141.33 Aligned_cols=117 Identities=18% Similarity=0.338 Sum_probs=96.3
Q ss_pred HHHHHCCCcEEEEcccCCCC--CccCCCcEEEEEEccCCCCCchHHHHHHHHHHHHHHHhcCCEEEEEcCCCCchHHHHH
Q 003581 142 GILRQNGITHVLNCVGFVCP--EYFKGDLVYKTLWLQDSPSEDITSILYDVFDYFEDVREQGGRVFVHCCQGVSRSTSLV 219 (809)
Q Consensus 142 e~Lk~lGIT~VINL~~e~~p--~~~~~~i~yl~IpI~D~~~edL~~~L~eav~fIe~a~~kGgrVLVHC~aGvSRS~tVV 219 (809)
..++.++++.|+-+.+...+ .+...+|.++++++.|...+++ ..+.+.++.++.+.+ ||+|.|||++|+||+++++
T Consensus 88 ~~~~~~~v~s~vrln~~~yd~~~f~~~Gi~h~~l~f~Dg~tP~~-~~v~~fv~i~e~~~~-~g~iaVHCkaGlGRTG~li 165 (225)
T KOG1720|consen 88 QYFKNNNVTSIVRLNKRLYDAKRFTDAGIDHHDLFFADGSTPTD-AIVKEFVKIVENAEK-GGKIAVHCKAGLGRTGTLI 165 (225)
T ss_pred HHhhhcccceEEEcCCCCCChHHhcccCceeeeeecCCCCCCCH-HHHHHHHHHHHHHHh-cCeEEEEeccCCCchhHHH
Confidence 56778999999998664322 2334579999999999999886 667778888888888 9999999999999999999
Q ss_pred HHHHHhhcCCCHHHHHHHHHHHcCccccChhhHHHHHHHHH
Q 003581 220 IAYLMWREGQSFEDAFQYVKAARGVTNPNMGFACQLLLCQK 260 (809)
Q Consensus 220 IAYLM~~~gmSleeAl~~VRs~RP~I~PN~gFa~QLlq~Ek 260 (809)
+||||+.+||+..||+++||..||.+-..+.....+.++..
T Consensus 166 Ac~lmy~~g~ta~eaI~~lR~~RpG~V~gpqQ~~l~~~q~~ 206 (225)
T KOG1720|consen 166 ACYLMYEYGMTAGEAIAWLRICRPGAVIGPQQHKLLHKQRD 206 (225)
T ss_pred HHHHHHHhCCCHHHHHHHHHhcCCccccCHHHHHHHHHHHH
Confidence 99999999999999999999999977666555544544433
No 14
>COG2453 CDC14 Predicted protein-tyrosine phosphatase [Signal transduction mechanisms]
Probab=99.50 E-value=1.2e-13 Score=138.80 Aligned_cols=94 Identities=22% Similarity=0.323 Sum_probs=79.8
Q ss_pred CCCcEEEEEEccCCCCCchHHHHHHHHHHHHHHHhcCCEEEEEcCCCCchHHHHHHHHHHhh-cCCCHHHHHHHHHHHcC
Q 003581 165 KGDLVYKTLWLQDSPSEDITSILYDVFDYFEDVREQGGRVFVHCCQGVSRSTSLVIAYLMWR-EGQSFEDAFQYVKAARG 243 (809)
Q Consensus 165 ~~~i~yl~IpI~D~~~edL~~~L~eav~fIe~a~~kGgrVLVHC~aGvSRS~tVVIAYLM~~-~gmSleeAl~~VRs~RP 243 (809)
..++.++++|+.|...+++ ..+++++++|+.++.+|++|+|||.+|+|||+|+++||||++ +++..++|+.+++.+|+
T Consensus 70 ~~~~~~~~~~~~D~~~p~~-~~l~~~v~~i~~~~~~g~kVvVHC~~GigRSgtviaA~lm~~~~~~~~~~~i~~~~~~r~ 148 (180)
T COG2453 70 NDGIQVLHLPILDGTVPDL-EDLDKIVDFIEEALSKGKKVVVHCQGGIGRSGTVIAAYLMLYGGLSLADEAIAVKRRRRP 148 (180)
T ss_pred cCCceeeeeeecCCCCCcH-HHHHHHHHHHHHHHhcCCeEEEEcCCCCchHHHHHHHHHHHHcCCCCHHHHHHHHHhcCC
Confidence 4578899999999999998 889999999999999999999999999999999999999999 56677788888888887
Q ss_pred ccccChhhHHHHHHHHHH
Q 003581 244 VTNPNMGFACQLLLCQKR 261 (809)
Q Consensus 244 ~I~PN~gFa~QLlq~Ekr 261 (809)
. ++.....++..++..
T Consensus 149 ~--~v~~~~q~~~~~e~~ 164 (180)
T COG2453 149 G--AVVTEIQHLFELEQE 164 (180)
T ss_pred c--ccccHHHHHHHHHHH
Confidence 6 555555555555443
No 15
>smart00262 GEL Gelsolin homology domain. Gelsolin/severin/villin homology domain. Calcium-binding and actin-binding. Both intra- and extracellular domains.
Probab=99.45 E-value=2.5e-13 Score=120.90 Aligned_cols=75 Identities=27% Similarity=0.377 Sum_probs=67.6
Q ss_pred ccCCCcccCCCCCCeEEEecCCceEEEecCCCChhhhHHHHHHHHHHHHHhh-cCCcEEEccCCCChhHHHHHhcC
Q 003581 293 LLNYPVAQGFDTRGAFIVLVPSAIYVWIGKNCSVMMSNRAREAANQVIRYEK-AQGQITSIKEGEEPLEFWDALVR 367 (809)
Q Consensus 293 ~eV~~s~sSLNSrDvFILdtps~IYVWiGk~ss~~er~~A~~aA~qI~~~e~-~~~~I~vV~EG~Ep~eFW~aLGG 367 (809)
.+++....+|+++|||||+++..||+|+|++|+..++..|...|..+.+..+ ...+|.+|+||.|+.+||..|||
T Consensus 14 ~~~~~~~~~L~s~d~fild~~~~iyvW~G~~as~~ek~~A~~~a~~~~~~~~~~~~~i~~v~eg~E~~~F~~~f~~ 89 (90)
T smart00262 14 PEVPFSQGSLNSGDCYILDTGSEIYVWVGKKSSQDEKKKAAELAVELDDTLGPGPVQVRVVDEGKEPPEFWSLFGG 89 (90)
T ss_pred EEcCCCHHHCCCCCEEEEECCCEEEEEECCCCCHHHHHHHHHHHHHHHHhcCCCCceEEEEeCCCCCHHHHHHhCC
Confidence 3677888999999999999999999999999999999999999988887654 44679999999999999999987
No 16
>KOG0444 consensus Cytoskeletal regulator Flightless-I (contains leucine-rich and gelsolin repeats) [Cytoskeleton]
Probab=99.31 E-value=2.6e-13 Score=154.39 Aligned_cols=165 Identities=17% Similarity=0.249 Sum_probs=123.2
Q ss_pred ccChhhHHHHHHHH----HHhccCCCCCccccceeeecCC-CCCCCccccccccCCCcccCCCCCCeEEEecCC------
Q 003581 246 NPNMGFACQLLLCQ----KRVHAMPASPNSMLRIYRIAPH-SSYDPLHLVPKLLNYPVAQGFDTRGAFIVLVPS------ 314 (809)
Q Consensus 246 ~PN~gFa~QLlq~E----krL~~~paSp~s~~RLYRV~g~-S~~dpr~LVpK~eV~~s~sSLNSrDvFILdtps------ 314 (809)
+.|..|...+..-. .++........+.+.+||++.+ +....+.| ++.+.+..|||..||||..|.
T Consensus 1010 QEN~KFlSHFKRKFiIhrGkRk~~~~~G~~~pelfq~R~NGsalctR~I----Qin~da~~LnS~FC~iL~vPFe~~~~~ 1085 (1255)
T KOG0444|consen 1010 QENHKFLSHFKRKFIIHRGKRKLTKNLGGKWPELFQMRANGSALCTRTI----QINCDANQLNSAFCHMLRIPFEEDGHR 1085 (1255)
T ss_pred hhhhHHHHHhhhhheeeccccchhhhhcCCCchheeeecCCccceeeeE----EecCcHHHHhhhhHheEecccccCCCc
Confidence 45666665554322 1121112334567789999986 44556666 899999999999999999763
Q ss_pred -ceEEEecCCCChhhhHHHHHHHHHHHHH-hhcCCcEEEccCCCChhHHHHHhcCCCCCCCCCccccccCCceeeEeecC
Q 003581 315 -AIYVWIGKNCSVMMSNRAREAANQVIRY-EKAQGQITSIKEGEEPLEFWDALVRGQFFADGCNKEEVKNEQVSFSGSNK 392 (809)
Q Consensus 315 -~IYVWiGk~ss~~er~~A~~aA~qI~~~-e~~~~~I~vV~EG~Ep~eFW~aLGGk~~y~~~~~~~~~~~~pRLF~cSna 392 (809)
.+|+|.|+.|+. .++..|..+... ....-.+++|+||+|+.+||..+||+.+|.++. ......|||+|++.
T Consensus 1086 gvvy~w~gk~sdp----~e~~~a~d~~~~~~d~~~~~~~~~egee~e~fw~~~g~~k~ye~d~---~~~khtrlfrc~ne 1158 (1255)
T KOG0444|consen 1086 GVVYVWMGKDSDP----REHEFASDLVVRDDDNDFRIVEVQEGEENEEFWKVLGGKKKYETDS---SFVKHTRLFRCTNE 1158 (1255)
T ss_pred eEEEEEeccCCCh----HHHHHHHHhcCccccchhhhhccCCccchHHHhcccCCCCccchhH---HHHHHHHHHhccch
Confidence 589999999998 666666444322 122234778999999999999999999998743 23456799999999
Q ss_pred CccEE-EeccCCCCCCCCCccchhhhccCC
Q 003581 393 IATLM-QDGAGEIDEYDLDFELFHKALDGG 421 (809)
Q Consensus 393 sG~f~-eE~~~pf~Q~DLd~e~v~~~~~g~ 421 (809)
+|.|. .|.+..|+|+||+.++++....|.
T Consensus 1159 kgyfa~sek~~DfcqDDl~dddim~ldng~ 1188 (1255)
T KOG0444|consen 1159 KGYFAISEKTVDFCQDDLDDDDIMILDNGD 1188 (1255)
T ss_pred hhhhhHhHhhhhhhhccchhhhhhhhcccc
Confidence 99999 888889999999999998766554
No 17
>PF05706 CDKN3: Cyclin-dependent kinase inhibitor 3 (CDKN3); InterPro: IPR022778 This entry represents a domain found in cyclin-dependent kinase inhibitor 3 or kinase associated phosphatase proteins from several mammalian species. The cyclin-dependent kinase (Cdk)-associated protein phosphatase (KAP) is a human dual specificity protein phosphatase that dephosphorylates Cdk2 on threonine 160 in a cyclin-dependent manner [], []. This domain is also found in MAP kinase phosphatase and esterases. This entry contains both eukaryotic and bacterial proteins.; GO: 0004721 phosphoprotein phosphatase activity, 0004725 protein tyrosine phosphatase activity; PDB: 1FQ1_A 1FPZ_F.
Probab=99.26 E-value=1.2e-11 Score=123.12 Aligned_cols=107 Identities=19% Similarity=0.249 Sum_probs=69.1
Q ss_pred CCeEECChhh----------hcCHHHHHHCCCcEEEEcccCCC------CC----ccCCCcEEEEEEccCCCCCchHHHH
Q 003581 128 DHIYLGSDAV----------AKNRGILRQNGITHVLNCVGFVC------PE----YFKGDLVYKTLWLQDSPSEDITSIL 187 (809)
Q Consensus 128 p~LYLGs~~~----------A~d~e~Lk~lGIT~VINL~~e~~------p~----~~~~~i~yl~IpI~D~~~edL~~~L 187 (809)
..|.|...+. ..|.+.|+..|++.||.+++... +. +-..++.++|+||.|...+++.. +
T Consensus 41 ~~Lglt~~PG~k~~d~~RdL~~DL~~Lk~~G~~~Vvtl~~~~EL~~l~Vp~L~~~~~~~Gi~~~h~PI~D~~aPd~~~-~ 119 (168)
T PF05706_consen 41 GFLGLTFLPGCKFKDWRRDLQADLERLKDWGAQDVVTLLTDHELARLGVPDLGEAAQARGIAWHHLPIPDGSAPDFAA-A 119 (168)
T ss_dssp SEEEEES-TT-EETTEEB-HHHHHHHHHHTT--EEEE-S-HHHHHHTT-TTHHHHHHHTT-EEEE----TTS---HHH-H
T ss_pred ceeeeecCCCcccccccchHHHHHHHHHHCCCCEEEEeCcHHHHHHcCCccHHHHHHHcCCEEEecCccCCCCCCHHH-H
Confidence 4566666555 35678999999999999875211 11 12358999999999999998643 4
Q ss_pred HHHHHHHHHHHhcCCEEEEEcCCCCchHHHHHHHHHHhhc-CCCHHHHH
Q 003581 188 YDVFDYFEDVREQGGRVFVHCCQGVSRSTSLVIAYLMWRE-GQSFEDAF 235 (809)
Q Consensus 188 ~eav~fIe~a~~kGgrVLVHC~aGvSRS~tVVIAYLM~~~-gmSleeAl 235 (809)
.++++-|...+++|++|+|||.+|+|||++|++++|+... .++.++|+
T Consensus 120 ~~i~~eL~~~L~~g~~V~vHC~GGlGRtGlvAAcLLl~L~~~~~p~~AI 168 (168)
T PF05706_consen 120 WQILEELAARLENGRKVLVHCRGGLGRTGLVAACLLLELGDTMSPEQAI 168 (168)
T ss_dssp HHHHHHHHHHHHTT--EEEE-SSSSSHHHHHHHHHHHHH-SSS-HHHHH
T ss_pred HHHHHHHHHHHHcCCEEEEECCCCCCHHHHHHHHHHHHHcCCCChhhcC
Confidence 4677888889999999999999999999999999988764 68999986
No 18
>KOG0444 consensus Cytoskeletal regulator Flightless-I (contains leucine-rich and gelsolin repeats) [Cytoskeleton]
Probab=99.26 E-value=5.5e-12 Score=143.83 Aligned_cols=149 Identities=22% Similarity=0.270 Sum_probs=118.9
Q ss_pred CccccceeeecCCCCCCCccccccccCCCcccCCCCCCeEEEecCCceEEEecCCCChhhhHHHHHHHHHHHHHh-hcCC
Q 003581 269 PNSMLRIYRIAPHSSYDPLHLVPKLLNYPVAQGFDTRGAFIVLVPSAIYVWIGKNCSVMMSNRAREAANQVIRYE-KAQG 347 (809)
Q Consensus 269 p~s~~RLYRV~g~S~~dpr~LVpK~eV~~s~sSLNSrDvFILdtps~IYVWiGk~ss~~er~~A~~aA~qI~~~e-~~~~ 347 (809)
+.-+.||||+.++..-. .+ --|++..+||++|.||+||.|..||||.|.++......+|+-+|.+|.+.+ +++.
T Consensus 618 ~~h~TRlYrv~~~g~~i--~l---EPVpl~~tSLDPRf~FlLD~G~~IyiW~G~~s~~t~~~KARLfAEkinK~eRKgK~ 692 (1255)
T KOG0444|consen 618 PAHLTRLYRVGVNGTAI--EL---EPVPLSVTSLDPRFCFLLDAGETIYIWSGYKSRITVSNKARLFAEKINKRERKGKS 692 (1255)
T ss_pred hHHhhhhheecccccee--Ee---eccCccccccCcceEEEEeCCceEEEEeccchhcccchHHHHHHHHhhhhhccCce
Confidence 34578999987652111 11 134678899999999999999999999999999999999999999999987 5678
Q ss_pred cEEEccCCCChhHHHHHhcCCCCCCC----CCccccc-cCCceeeEeecCCccEE--E--ecc-CCCCCCCCCccchhhh
Q 003581 348 QITSIKEGEEPLEFWDALVRGQFFAD----GCNKEEV-KNEQVSFSGSNKIATLM--Q--DGA-GEIDEYDLDFELFHKA 417 (809)
Q Consensus 348 ~I~vV~EG~Ep~eFW~aLGGk~~y~~----~~~~~~~-~~~pRLF~cSnasG~f~--e--E~~-~pf~Q~DLd~e~v~~~ 417 (809)
+|+...+|+|+.|||.+|||.+..++ .+.+++. ...||||++.-.-|.+. + +.+ +.+.|+-|+...||.+
T Consensus 693 EI~l~rQg~e~pEFWqaLgg~p~e~~~~ikeHVPEdf~p~qpkLYkV~lGmGyLELPQvel~P~~~l~q~lL~sk~VyiL 772 (1255)
T KOG0444|consen 693 EIELCRQGREPPEFWQALGGNPDEPQGAIKEHVPEDFVPEQPKLYKVNLGMGYLELPQVELLPKGILKQDLLGSKGVYIL 772 (1255)
T ss_pred eeehhhhcCCCHHHHHHhCCCCcccccchhhcCCcccCCCCcceEEEccccceeecchhhhchhhHHHHHhhcCCeEEEE
Confidence 89999999999999999999877654 3344444 67899999998889887 2 222 3678899999999887
Q ss_pred ccCCC
Q 003581 418 LDGGV 422 (809)
Q Consensus 418 ~~g~~ 422 (809)
+.+..
T Consensus 773 Dc~sD 777 (1255)
T KOG0444|consen 773 DCNSD 777 (1255)
T ss_pred ecCCc
Confidence 76543
No 19
>PF03162 Y_phosphatase2: Tyrosine phosphatase family; InterPro: IPR004861 Protein tyrosine (pTyr) phosphorylation is a common post-translational modification which can create novel recognition motifs for protein interactions and cellular localisation, affect protein stability, and regulate enzyme activity. Consequently, maintaining an appropriate level of protein tyrosine phosphorylation is essential for many cellular functions. Tyrosine-specific protein phosphatases (PTPase; 3.1.3.48 from EC) catalyse the removal of a phosphate group attached to a tyrosine residue, using a cysteinyl-phosphate enzyme intermediate. These enzymes are key regulatory components in signal transduction pathways (such as the MAP kinase pathway) and cell cycle control, and are important in the control of cell growth, proliferation, differentiation and transformation [, ]. The PTP superfamily can be divided into four subfamilies []: (1) pTyr-specific phosphatases (2) dual specificity phosphatases (dTyr and dSer/dThr) (3) Cdc25 phosphatases (dTyr and/or dThr) (4) LMW (low molecular weight) phosphatases Based on their cellular localisation, PTPases are also classified as: Receptor-like, which are transmembrane receptors that contain PTPase domains [] Non-receptor (intracellular) PTPases [] All PTPases carry the highly conserved active site motif C(X)5R (PTP signature motif), employ a common catalytic mechanism, and share a similar core structure made of a central parallel beta-sheet with flanking alpha-helices containing a beta-loop-alpha-loop that encompasses the PTP signature motif []. Functional diversity between PTPases is endowed by regulatory domains and subunits. This entry represents protein-tyrosine phosphatases predominantly from fungi, plants and bacteria, several of which are putative enzymes. These proteins are closely related to the Y-phosphatase and DSPc families. This entry includes the PTPase SIW14 from Saccharomyces cerevisiae (Baker's yeast), which plays a role in actin filament organisation and endocytosis.; PDB: 2Q47_A 1XRI_A.
Probab=99.23 E-value=2.1e-11 Score=121.46 Aligned_cols=117 Identities=14% Similarity=0.161 Sum_probs=76.6
Q ss_pred ccceeecCCeEECChhhhcCHHHHHHCCCcEEEEcccCCCCCc-----cCCCcEEEEEEccCCCCC---chHHHHHHHHH
Q 003581 121 KECSRIADHIYLGSDAVAKNRGILRQNGITHVLNCVGFVCPEY-----FKGDLVYKTLWLQDSPSE---DITSILYDVFD 192 (809)
Q Consensus 121 ~~iSeI~p~LYLGs~~~A~d~e~Lk~lGIT~VINL~~e~~p~~-----~~~~i~yl~IpI~D~~~e---dL~~~L~eav~ 192 (809)
.+...|.++||-|+++.+.+...|+++||+.||||..+..+.. -..++.++++++.....+ --...+.++++
T Consensus 5 ~nF~~V~~~vYRS~~P~~~n~~fL~~L~LKTII~L~~e~~~~~~~~f~~~~~I~l~~~~~~~~~~~~~~~~~~~v~~aL~ 84 (164)
T PF03162_consen 5 LNFGMVEPGVYRSAQPTPANFPFLERLGLKTIINLRPEPPSQDFLEFAEENGIKLIHIPMSSSKDPWVPISEEQVAEALE 84 (164)
T ss_dssp TT-EEEETTEEEESS--HHHHHHHHHHT-SEEEE--SS---HHHHHHHHHTT-EEEE-------GGG----HHHHHHHHH
T ss_pred ccccCCCCCccCCCCCChhhHHHHHHCCCceEEEecCCCCCHHHHHHHhhcCceEEEeccccccCccccCCHHHHHHHHH
Confidence 3466899999999999999999999999999999987543321 146899999998754431 12234556666
Q ss_pred HHHHHHhcCCEEEEEcCCCCchHHHHHHHHHHhhcCCCHHHHHHHHHH
Q 003581 193 YFEDVREQGGRVFVHCCQGVSRSTSLVIAYLMWREGQSFEDAFQYVKA 240 (809)
Q Consensus 193 fIe~a~~kGgrVLVHC~aGvSRS~tVVIAYLM~~~gmSleeAl~~VRs 240 (809)
+|.+. .+.+|||||..|..|+++|+++|- +.+||++..|++..+.
T Consensus 85 ~ild~--~n~PvLiHC~~G~~rTG~vvg~lR-k~Q~W~~~~i~~Ey~~ 129 (164)
T PF03162_consen 85 IILDP--RNYPVLIHCNHGKDRTGLVVGCLR-KLQGWSLSSIFDEYRR 129 (164)
T ss_dssp HHH-G--GG-SEEEE-SSSSSHHHHHHHHHH-HHTTB-HHHHHHHHHH
T ss_pred HHhCC--CCCCEEEEeCCCCcchhhHHHHHH-HHcCCCHHHHHHHHHH
Confidence 55443 457999999999999999999988 7899999999998875
No 20
>TIGR01244 conserved hypothetical protein TIGR01244. No member of this family is characterized. The member from Xylella fastidiosa is a longer protein with an N-terminal region described by this model, followed by a metallo-beta-lactamase family domain and an additional C-terminal region. Members scoring above the trusted cutoff are limited to the proteobacteria.
Probab=99.18 E-value=3.1e-10 Score=109.37 Aligned_cols=117 Identities=18% Similarity=0.195 Sum_probs=85.6
Q ss_pred ceeecCCeEECChhhhcCHHHHHHCCCcEEEEcccCCC----CCc-------cCCCcEEEEEEccCCCCCchHHHHHHHH
Q 003581 123 CSRIADHIYLGSDAVAKNRGILRQNGITHVLNCVGFVC----PEY-------FKGDLVYKTLWLQDSPSEDITSILYDVF 191 (809)
Q Consensus 123 iSeI~p~LYLGs~~~A~d~e~Lk~lGIT~VINL~~e~~----p~~-------~~~~i~yl~IpI~D~~~edL~~~L~eav 191 (809)
+.+|.+.+|+++.....+.+.|+++||+.|||+..... |.. ...++.|+++|+..... +. .. +.
T Consensus 2 ~~~i~~~~~~s~qlt~~d~~~L~~~GiktVIdlR~~~E~~~~p~~~~~~~~a~~~gl~y~~iPv~~~~~-~~-~~---v~ 76 (135)
T TIGR01244 2 IRKLTEHLYVSPQLTKADAAQAAQLGFKTVINNRPDREEESQPDFAQIKAAAEAAGVTYHHQPVTAGDI-TP-DD---VE 76 (135)
T ss_pred ceEcCCCeeEcCCCCHHHHHHHHHCCCcEEEECCCCCCCCCCCCHHHHHHHHHHCCCeEEEeecCCCCC-CH-HH---HH
Confidence 45899999999999999999999999999999964321 111 12589999999875332 11 11 22
Q ss_pred HHHHHHHhcCCEEEEEcCCCCchHHHHHHHHHHhhcCCCHHHHHHHHHHHcCccc
Q 003581 192 DYFEDVREQGGRVFVHCCQGVSRSTSLVIAYLMWREGQSFEDAFQYVKAARGVTN 246 (809)
Q Consensus 192 ~fIe~a~~kGgrVLVHC~aGvSRS~tVVIAYLM~~~gmSleeAl~~VRs~RP~I~ 246 (809)
.|.+......++||+||++|. |++++.+.++.. .|++.+++++..+..--.+.
T Consensus 77 ~f~~~~~~~~~pvL~HC~sG~-Rt~~l~al~~~~-~g~~~~~i~~~~~~~G~~~~ 129 (135)
T TIGR01244 77 TFRAAIGAAEGPVLAYCRSGT-RSSLLWGFRQAA-EGVPVEEIVRRAQAAGYDLS 129 (135)
T ss_pred HHHHHHHhCCCCEEEEcCCCh-HHHHHHHHHHHH-cCCCHHHHHHHHHHcCCCcc
Confidence 222222245689999999999 998887666655 79999999999987654443
No 21
>KOG0445 consensus Actin regulatory protein supervillin (gelsolin/villin family) [Cytoskeleton]
Probab=99.15 E-value=8.9e-11 Score=134.28 Aligned_cols=151 Identities=23% Similarity=0.273 Sum_probs=116.2
Q ss_pred ccceeeecCCCCCCCccccccccCCCcccCCCCCCeEEEecCC--ceEEEecCCCChhhhHHHHHHHHHHHHHh---hcC
Q 003581 272 MLRIYRIAPHSSYDPLHLVPKLLNYPVAQGFDTRGAFIVLVPS--AIYVWIGKNCSVMMSNRAREAANQVIRYE---KAQ 346 (809)
Q Consensus 272 ~~RLYRV~g~S~~dpr~LVpK~eV~~s~sSLNSrDvFILdtps--~IYVWiGk~ss~~er~~A~~aA~qI~~~e---~~~ 346 (809)
..|+|+|.|..+...... ++.+..++|.|+-.||+...+ .+|+|+|.++-...+..+..+|+.+++++ ..+
T Consensus 644 ~erlY~v~G~vs~Et~l~----Ev~c~~S~LRSr~smv~~~~~~~~~~~whg~k~~~ht~~v~v~aa~~~~~q~pgs~~~ 719 (919)
T KOG0445|consen 644 EERLYCVRGEVSVETNLL----EVACHCSSLRSRTSMVVLNVNKALIYLWHGCKAQAHTKEVGVTAANKIKEQCPGSSSK 719 (919)
T ss_pred hhheeeEecccccchhhh----HhhhccccccccceEEEEeccccceEEEecccCCcchhhHhHHHHHHHHHhCCCcccc
Confidence 457999999865555433 889999999999999998764 69999999999999999999999999886 344
Q ss_pred CcEEEccCCCChhHHHHHhcCCCCCCCCCccccccCCceeeEeecCCccEEEeccCCCCCCCCCccchhhhccCCCCCCe
Q 003581 347 GQITSIKEGEEPLEFWDALVRGQFFADGCNKEEVKNEQVSFSGSNKIATLMQDGAGEIDEYDLDFELFHKALDGGVVPPF 426 (809)
Q Consensus 347 ~~I~vV~EG~Ep~eFW~aLGGk~~y~~~~~~~~~~~~pRLF~cSnasG~f~eE~~~pf~Q~DLd~e~v~~~~~g~~~p~~ 426 (809)
..+++|+||.|+..||++||-|. ..+.+|||..|... ..|..+|..-. +.+.+.+||.+
T Consensus 720 ~~~~Eveegs~~~~~~~alGrkd----------f~~~~RlF~~sS~q---a~els~p~rc~---~pFsQ~~Ly~a----- 778 (919)
T KOG0445|consen 720 VTIHEVEEGSEPLGFWDALGRKD----------FNFAPRLFILSSSQ---ATELSYPARCP---MPFSQEDLYSA----- 778 (919)
T ss_pred ceeEeecCCCCchhhhhhccccc----------ccccceeeeccchh---hhhccCcccCC---CcccHHHHhhh-----
Confidence 67899999999999999999543 46789999987654 22322222111 33334444444
Q ss_pred eccCCCCceeecCccccchhhhhhhc
Q 003581 427 SVSNAGSETCVPARESGWCRLRRKFV 452 (809)
Q Consensus 427 ~~~~~~~e~~lpa~~~~w~~~~~~~~ 452 (809)
|+.|+|+|.||=- |..-| |||
T Consensus 779 fLvD~gdelwLW~----w~s~r-~~A 799 (919)
T KOG0445|consen 779 FLVDNGDELWLWQ----WASDR-KSA 799 (919)
T ss_pred eeeccCCeeEeeh----hhhHH-HHH
Confidence 8999999999965 88888 554
No 22
>PF00626 Gelsolin: Gelsolin repeat; InterPro: IPR007123 Gelsolin is a cytoplasmic, calcium-regulated, actin-modulating protein that binds to the barbed ends of actin filaments, preventing monomer exchange (end-blocking or capping) []. It can promote nucleation (the assembly of monomers into filaments), as well as sever existing filaments. In addition, this protein binds with high affinity to fibronectin. Plasma gelsolin and cytoplasmic gelsolin are derived from a single gene by alternate initiation sites and differential splicing. Sequence comparisons indicate an evolutionary relationship between gelsolin, villin, fragmin and severin []. Six large repeating segments occur in gelsolin and villin, and 3 similar segments in severin and fragmin. While the multiple repeats have yet to be related to any known function of the actin-severing proteins, the superfamily appears to have evolved from an ancestral sequence of 120 to 130 amino acid residues [].; PDB: 3FG6_F 1RGI_G 2FGH_A 1D0N_B 3EGD_B 2NUP_B 2NUT_B 3EGX_B 1JHW_A 1J72_A ....
Probab=99.11 E-value=7e-11 Score=101.29 Aligned_cols=69 Identities=22% Similarity=0.383 Sum_probs=61.5
Q ss_pred cCCCcccCCCCCCeEEEecCCceEEEecCCCChhhhHHHHHHHHHHH-HHhhcCCcEEEccCCCChhHHH
Q 003581 294 LNYPVAQGFDTRGAFIVLVPSAIYVWIGKNCSVMMSNRAREAANQVI-RYEKAQGQITSIKEGEEPLEFW 362 (809)
Q Consensus 294 eV~~s~sSLNSrDvFILdtps~IYVWiGk~ss~~er~~A~~aA~qI~-~~e~~~~~I~vV~EG~Ep~eFW 362 (809)
++..+..+|+++||||||++..||+|+|++|+..++..+...|..+. ........+..+.||+|+..||
T Consensus 7 ~~~~s~~~L~s~~~yIld~~~~i~vW~G~~~~~~e~~~a~~~a~~~~~~~~~~~~~~~~~~eg~E~~~F~ 76 (76)
T PF00626_consen 7 QVPLSQSSLNSDDCYILDCGYEIFVWVGKKSSPEEKAFAAQLAQELLSEERPPLPEVIRVEEGKEPAEFL 76 (76)
T ss_dssp EESSSGGGEETTSEEEEEESSEEEEEEHTTSHHHHHHHHHHHHHHHHHHHTTTTSEEEEEETTHHHHHHH
T ss_pred cCCCCHHHcCCCCEEEEEeCCCcEEEEeccCCHHHHHHHHHHHHHhhhhcCCCCCEEEEecCCCCChHHC
Confidence 56778899999999999999999999999999999999999999888 4435556788889999999998
No 23
>KOG2836 consensus Protein tyrosine phosphatase IVA1 [Signal transduction mechanisms]
Probab=98.86 E-value=2.8e-08 Score=95.68 Aligned_cols=118 Identities=25% Similarity=0.290 Sum_probs=86.3
Q ss_pred cCHHHHHHCCCcEEEEcccCCCC--CccCCCcEEEEEEccCCCCCchHHHHHHHHHHHHHH--HhcCCEEEEEcCCCCch
Q 003581 139 KNRGILRQNGITHVLNCVGFVCP--EYFKGDLVYKTLWLQDSPSEDITSILYDVFDYFEDV--REQGGRVFVHCCQGVSR 214 (809)
Q Consensus 139 ~d~e~Lk~lGIT~VINL~~e~~p--~~~~~~i~yl~IpI~D~~~edL~~~L~eav~fIe~a--~~kGgrVLVHC~aGvSR 214 (809)
.-++.|+++|++.||-+++.... ....++|..+..+..|...+. ...+++-...+... .+-|..|.|||.+|+||
T Consensus 32 ~fieELkKygvttvVRVCe~TYdt~~lek~GI~Vldw~f~dg~ppp-~qvv~~w~~l~~~~f~e~p~~cvavhcvaglgr 110 (173)
T KOG2836|consen 32 KFIEELKKYGVTTVVRVCEPTYDTTPLEKEGITVLDWPFDDGAPPP-NQVVDDWLSLVKTKFREEPGCCVAVHCVAGLGR 110 (173)
T ss_pred HHHHHHHhcCCeEEEEecccccCCchhhhcCceEeecccccCCCCc-hHHHHHHHHHHHHHHhhCCCCeEEEEeecccCc
Confidence 34588999999999998864322 123467888888887765543 24444444433322 23578999999999999
Q ss_pred HHHHHHHHHHhhcCCCHHHHHHHHHHHcCccccChhhHHHHHHHHHHh
Q 003581 215 STSLVIAYLMWREGQSFEDAFQYVKAARGVTNPNMGFACQLLLCQKRV 262 (809)
Q Consensus 215 S~tVVIAYLM~~~gmSleeAl~~VRs~RP~I~PN~gFa~QLlq~EkrL 262 (809)
.+.+|+..|+.. ||.+++|+++||++|..+ .|. .||+-+++..
T Consensus 111 apvlvalalie~-gmkyedave~ir~krrga-~n~---kql~~lekyr 153 (173)
T KOG2836|consen 111 APVLVALALIEA-GMKYEDAVEMIRQKRRGA-INS---KQLLYLEKYR 153 (173)
T ss_pred chHHHHHHHHHc-cccHHHHHHHHHHHhhcc-ccH---HHHHHHHHhC
Confidence 999999888866 999999999999999876 443 5777777654
No 24
>smart00012 PTPc_DSPc Protein tyrosine phosphatase, catalytic domain, undefined specificity. Protein tyrosine phosphatases. Homologues detected by this profile and not by those of "PTPc" or "DSPc" are predicted to be protein phosphatases with a similar fold to DSPs and PTPs, yet with unpredicted specificities.
Probab=98.83 E-value=2.4e-08 Score=88.78 Aligned_cols=84 Identities=14% Similarity=0.210 Sum_probs=62.2
Q ss_pred EEEEEccCCCCCchHHHHHHHHHHHHHHHh---cCCEEEEEcCCCCchHHHHHHHHHHhhc------CCCHHHHHHHHHH
Q 003581 170 YKTLWLQDSPSEDITSILYDVFDYFEDVRE---QGGRVFVHCCQGVSRSTSLVIAYLMWRE------GQSFEDAFQYVKA 240 (809)
Q Consensus 170 yl~IpI~D~~~edL~~~L~eav~fIe~a~~---kGgrVLVHC~aGvSRS~tVVIAYLM~~~------gmSleeAl~~VRs 240 (809)
|+...+.|...++....|.+.++.+++... .+++|+|||.+|+|||++++++|+|... ..++.+++..+|.
T Consensus 5 ~~~~~Wpd~~~P~~~~~~~~~~~~v~~~~~~~~~~~pvlVHC~~G~gRtg~~~~~~~~~~~~~~~~~~~~~~~~~~~ir~ 84 (105)
T smart00012 5 YHYTGWPDHGVPESPDSILEFLRAVKKNLNQSSSSGPVVVHCSAGVGRTGTFVALDILLQQLESETGEVDIFQTVKELRK 84 (105)
T ss_pred EeeCCCCCCCCCCCHHHHHHHHHHHHHHHHhcCCCCCEEEEeCCCCChhhHHHHHHHHHHHHHhcCCCCCHHHHHHHHHh
Confidence 445556666655544556566666665544 3689999999999999999999998764 3688899999999
Q ss_pred HcCccccChhhHH
Q 003581 241 ARGVTNPNMGFAC 253 (809)
Q Consensus 241 ~RP~I~PN~gFa~ 253 (809)
.|+..-.+.....
T Consensus 85 ~r~~~~~~~~q~~ 97 (105)
T smart00012 85 QRPGMVQTFEQYL 97 (105)
T ss_pred hhhhhCCcHHHHH
Confidence 9998766654433
No 25
>smart00404 PTPc_motif Protein tyrosine phosphatase, catalytic domain motif.
Probab=98.83 E-value=2.4e-08 Score=88.78 Aligned_cols=84 Identities=14% Similarity=0.210 Sum_probs=62.2
Q ss_pred EEEEEccCCCCCchHHHHHHHHHHHHHHHh---cCCEEEEEcCCCCchHHHHHHHHHHhhc------CCCHHHHHHHHHH
Q 003581 170 YKTLWLQDSPSEDITSILYDVFDYFEDVRE---QGGRVFVHCCQGVSRSTSLVIAYLMWRE------GQSFEDAFQYVKA 240 (809)
Q Consensus 170 yl~IpI~D~~~edL~~~L~eav~fIe~a~~---kGgrVLVHC~aGvSRS~tVVIAYLM~~~------gmSleeAl~~VRs 240 (809)
|+...+.|...++....|.+.++.+++... .+++|+|||.+|+|||++++++|+|... ..++.+++..+|.
T Consensus 5 ~~~~~Wpd~~~P~~~~~~~~~~~~v~~~~~~~~~~~pvlVHC~~G~gRtg~~~~~~~~~~~~~~~~~~~~~~~~~~~ir~ 84 (105)
T smart00404 5 YHYTGWPDHGVPESPDSILEFLRAVKKNLNQSSSSGPVVVHCSAGVGRTGTFVALDILLQQLESETGEVDIFQTVKELRK 84 (105)
T ss_pred EeeCCCCCCCCCCCHHHHHHHHHHHHHHHHhcCCCCCEEEEeCCCCChhhHHHHHHHHHHHHHhcCCCCCHHHHHHHHHh
Confidence 445556666655544556566666665544 3689999999999999999999998764 3688899999999
Q ss_pred HcCccccChhhHH
Q 003581 241 ARGVTNPNMGFAC 253 (809)
Q Consensus 241 ~RP~I~PN~gFa~ 253 (809)
.|+..-.+.....
T Consensus 85 ~r~~~~~~~~q~~ 97 (105)
T smart00404 85 QRPGMVQTFEQYL 97 (105)
T ss_pred hhhhhCCcHHHHH
Confidence 9998766654433
No 26
>PF04273 DUF442: Putative phosphatase (DUF442); InterPro: IPR005939 Although this domain is uncharacterised it seems likely that it performs a phosphatase function.; GO: 0016787 hydrolase activity; PDB: 2F46_A 3GXH_B 3GXG_B.
Probab=98.72 E-value=4.8e-08 Score=91.75 Aligned_cols=92 Identities=21% Similarity=0.257 Sum_probs=55.5
Q ss_pred ceeecCCeEECChhhhcCHHHHHHCCCcEEEEcccCCC-C---Cc-------cCCCcEEEEEEccCCCCCchHHHHHHHH
Q 003581 123 CSRIADHIYLGSDAVAKNRGILRQNGITHVLNCVGFVC-P---EY-------FKGDLVYKTLWLQDSPSEDITSILYDVF 191 (809)
Q Consensus 123 iSeI~p~LYLGs~~~A~d~e~Lk~lGIT~VINL~~e~~-p---~~-------~~~~i~yl~IpI~D~~~edL~~~L~eav 191 (809)
+.+|.+.+|+++++...+++.|++.||++|||+..... + .. ...++.|+++|+.-.. +. ...+.
T Consensus 2 i~~i~~~~~vs~Q~~~~d~~~la~~GfktVInlRpd~E~~~qp~~~~~~~~a~~~Gl~y~~iPv~~~~---~~--~~~v~ 76 (110)
T PF04273_consen 2 IRQISDDLSVSGQPSPEDLAQLAAQGFKTVINLRPDGEEPGQPSSAEEAAAAEALGLQYVHIPVDGGA---IT--EEDVE 76 (110)
T ss_dssp -EEEETTEEEECS--HHHHHHHHHCT--EEEE-S-TTSTTT-T-HHCHHHHHHHCT-EEEE----TTT-------HHHHH
T ss_pred CEecCCCeEECCCCCHHHHHHHHHCCCcEEEECCCCCCCCCCCCHHHHHHHHHHcCCeEEEeecCCCC---CC--HHHHH
Confidence 67899999999999999999999999999999964321 1 11 1348999999997432 21 22334
Q ss_pred HHHHHHHhcCCEEEEEcCCCCchHHHHHH
Q 003581 192 DYFEDVREQGGRVFVHCCQGVSRSTSLVI 220 (809)
Q Consensus 192 ~fIe~a~~kGgrVLVHC~aGvSRS~tVVI 220 (809)
.|.+...+..++||+||..|. |+.++.+
T Consensus 77 ~f~~~l~~~~~Pvl~hC~sG~-Ra~~l~~ 104 (110)
T PF04273_consen 77 AFADALESLPKPVLAHCRSGT-RASALWA 104 (110)
T ss_dssp HHHHHHHTTTTSEEEE-SCSH-HHHHHHH
T ss_pred HHHHHHHhCCCCEEEECCCCh-hHHHHHH
Confidence 444444445789999999999 9877644
No 27
>PLN02727 NAD kinase
Probab=98.63 E-value=1.2e-07 Score=113.86 Aligned_cols=99 Identities=11% Similarity=0.213 Sum_probs=78.0
Q ss_pred CeEECChhhhcCHHHHHHCCCcEEEEcccCCCC--Ccc--------CCCcEEEEEEccCCCCCchHHHHHHHHHHHHHHH
Q 003581 129 HIYLGSDAVAKNRGILRQNGITHVLNCVGFVCP--EYF--------KGDLVYKTLWLQDSPSEDITSILYDVFDYFEDVR 198 (809)
Q Consensus 129 ~LYLGs~~~A~d~e~Lk~lGIT~VINL~~e~~p--~~~--------~~~i~yl~IpI~D~~~edL~~~L~eav~fIe~a~ 198 (809)
.+|+++++...+++.|.++||+.|||+.++... .+. ..+++|+++|+.+...... +.++++.+++++
T Consensus 262 ~~~rsgQpspe~la~LA~~GfKTIINLRpd~E~~q~~~~ee~eAae~~GL~yVhIPVs~~~apt~-EqVe~fa~~l~~-- 338 (986)
T PLN02727 262 AFWRGGQVTEEGLKWLLEKGFKTIVDLRAEIVKDNFYQAAVDDAISSGKIEVVKIPVEVRTAPSA-EQVEKFASLVSD-- 338 (986)
T ss_pred eEEEeCCCCHHHHHHHHHCCCeEEEECCCCCcCCCchhHHHHHHHHHcCCeEEEeecCCCCCCCH-HHHHHHHHHHHh--
Confidence 689999999999999999999999999764431 121 1479999999977665543 445555555533
Q ss_pred hcCCEEEEEcCCCCchHHHHHHHHHHhhcCCC
Q 003581 199 EQGGRVFVHCCQGVSRSTSLVIAYLMWREGQS 230 (809)
Q Consensus 199 ~kGgrVLVHC~aGvSRS~tVVIAYLM~~~gmS 230 (809)
...++||+||+.|..|+++++++||.+.-+..
T Consensus 339 slpkPVLvHCKSGarRAGamvA~yl~~~~~~~ 370 (986)
T PLN02727 339 SSKKPIYLHSKEGVWRTSAMVSRWKQYMTRSA 370 (986)
T ss_pred hcCCCEEEECCCCCchHHHHHHHHHHHHcccc
Confidence 34689999999999999999999999886655
No 28
>cd00047 PTPc Protein tyrosine phosphatases (PTP) catalyze the dephosphorylation of phosphotyrosine peptides; they regulate phosphotyrosine levels in signal transduction pathways. The depth of the active site cleft renders the enzyme specific for phosphorylated Tyr (pTyr) residues, instead of pSer or pThr. This family has a distinctive active site signature motif, HCSAGxGRxG. Characterized as either transmembrane, receptor-like or non-transmembrane (soluble) PTPs. Receptor-like PTP domains tend to occur in two copies in the cytoplasmic region of the transmembrane proteins, only one copy may be active.
Probab=98.37 E-value=1.4e-06 Score=89.93 Aligned_cols=75 Identities=15% Similarity=0.272 Sum_probs=54.3
Q ss_pred cCCCCCchHHHHHHHHHHHHHHHh--cCCEEEEEcCCCCchHHHHHHHHHHhhc-----CCCHHHHHHHHHHHcCccccC
Q 003581 176 QDSPSEDITSILYDVFDYFEDVRE--QGGRVFVHCCQGVSRSTSLVIAYLMWRE-----GQSFEDAFQYVKAARGVTNPN 248 (809)
Q Consensus 176 ~D~~~edL~~~L~eav~fIe~a~~--kGgrVLVHC~aGvSRS~tVVIAYLM~~~-----gmSleeAl~~VRs~RP~I~PN 248 (809)
.|...++-...|.+.++.++.... .+++|+|||.+|+|||+++++++++... ..++.+|+..||+.|+.+-.+
T Consensus 139 ~d~~~p~~~~~~~~~~~~v~~~~~~~~~~pivVHC~~G~gRsg~~~a~~~~~~~~~~~~~~~~~~~v~~iR~~R~~~v~~ 218 (231)
T cd00047 139 PDHGVPESPDSLLDLLRKVRKSQQQPGSGPIVVHCSAGVGRTGTFIAIDILLQRLEAEGVVDIFQTVKELRSQRPGMVQT 218 (231)
T ss_pred CCCCccCChHHHHHHHHHHHHHhccCCCCCeEEECCCCCCccchHHHHHHHHHHHHhcCCCCHHHHHHHHHhccccccCC
Confidence 344444333334444444444432 3789999999999999999999987553 689999999999999987666
Q ss_pred hh
Q 003581 249 MG 250 (809)
Q Consensus 249 ~g 250 (809)
..
T Consensus 219 ~~ 220 (231)
T cd00047 219 EE 220 (231)
T ss_pred HH
Confidence 43
No 29
>COG5350 Predicted protein tyrosine phosphatase [General function prediction only]
Probab=98.32 E-value=2.6e-06 Score=83.94 Aligned_cols=111 Identities=18% Similarity=0.199 Sum_probs=79.8
Q ss_pred HHHHHHCCCcEEEEcccCCCCCccCCCc---EEEEEEccCCCCC------chHHHHHHHHHHHHHHHhcCCEEEEEcCCC
Q 003581 141 RGILRQNGITHVLNCVGFVCPEYFKGDL---VYKTLWLQDSPSE------DITSILYDVFDYFEDVREQGGRVFVHCCQG 211 (809)
Q Consensus 141 ~e~Lk~lGIT~VINL~~e~~p~~~~~~i---~yl~IpI~D~~~e------dL~~~L~eav~fIe~a~~kGgrVLVHC~aG 211 (809)
.+...+.|-+++|.+.........+..+ .++.+-+.|...+ .-..+++.+++|+++.-+. ...||||.+|
T Consensus 25 ae~~~rh~~t~mlsl~a~~t~~~~pa~~~~erhL~l~fnDI~~~~~g~~ap~e~Hv~~i~DF~~~wp~~-apllIHC~aG 103 (172)
T COG5350 25 AETAARHGPTHMLSLLAKGTYFHRPAVIAAERHLTLHFNDIAEPDDGWIAPGEAHVRAIIDFADEWPRF-APLLIHCYAG 103 (172)
T ss_pred HHHHhhcCCceEEEeecccccccCccccchhhceeEeeccccCCCccccCCCHHHHHHHHHHHhcCccc-cceeeeeccc
Confidence 4556778999999986532111112221 4455655554332 2236788999999987654 7999999999
Q ss_pred CchHHHHHH-HHHHhhcCCCHHHHHHHHHHHcCccccChhhH
Q 003581 212 VSRSTSLVI-AYLMWREGQSFEDAFQYVKAARGVTNPNMGFA 252 (809)
Q Consensus 212 vSRS~tVVI-AYLM~~~gmSleeAl~~VRs~RP~I~PN~gFa 252 (809)
+|||+++++ |-|.....|.-.++.+.++..+|.+.||....
T Consensus 104 ISRStA~A~i~a~ala~~~de~ela~~Lra~sp~atPN~Rli 145 (172)
T COG5350 104 ISRSTAAALIAALALAPDMDETELAERLRALSPYATPNPRLI 145 (172)
T ss_pred cccchHHHHHHHHhhccccChHHHHHHHHhcCcccCCChhHH
Confidence 999977654 45677789999999999999999999997543
No 30
>smart00194 PTPc Protein tyrosine phosphatase, catalytic domain.
Probab=98.26 E-value=3.2e-06 Score=88.86 Aligned_cols=77 Identities=13% Similarity=0.236 Sum_probs=54.1
Q ss_pred cCCCCCchHHHHHHHHHHHHHHHhc-CCEEEEEcCCCCchHHHHHHHHHHhh-----cCCCHHHHHHHHHHHcCccccCh
Q 003581 176 QDSPSEDITSILYDVFDYFEDVREQ-GGRVFVHCCQGVSRSTSLVIAYLMWR-----EGQSFEDAFQYVKAARGVTNPNM 249 (809)
Q Consensus 176 ~D~~~edL~~~L~eav~fIe~a~~k-GgrVLVHC~aGvSRS~tVVIAYLM~~-----~gmSleeAl~~VRs~RP~I~PN~ 249 (809)
.|...+.-...+.+.+..++..... +++|+|||.+|+||||++++++++.. ...++.+++..||..|+.+-.+.
T Consensus 167 ~d~~~P~~~~~~~~~i~~v~~~~~~~~~pivVHC~~G~gRsg~f~a~~~~~~~l~~~~~v~v~~~v~~lR~~R~~~v~~~ 246 (258)
T smart00194 167 PDHGVPESPKSILDLVRAVRKSQSTSTGPIVVHCSAGVGRTGTFIAIDILLQQLEAGKEVDIFEIVKELRSQRPGMVQTE 246 (258)
T ss_pred CCCCCCCCHHHHHHHHHHHHHhhccCCCCEEEEeCCCCCccchhhHHHHHHHHHHHcCCCCHHHHHHHHHhccccccCCH
Confidence 3444442223333344444433332 78999999999999999999997743 46899999999999999887765
Q ss_pred hhH
Q 003581 250 GFA 252 (809)
Q Consensus 250 gFa 252 (809)
...
T Consensus 247 ~Qy 249 (258)
T smart00194 247 EQY 249 (258)
T ss_pred HHH
Confidence 443
No 31
>PF13350 Y_phosphatase3: Tyrosine phosphatase family; PDB: 1YWF_A 2OZ5_B.
Probab=98.23 E-value=6.3e-06 Score=81.51 Aligned_cols=107 Identities=18% Similarity=0.260 Sum_probs=54.9
Q ss_pred CeEECChhh---hcCHHHHHHCCCcEEEEcccCCC----CCccCCCcEEEEEEccCCCCCc---hH----------HHHH
Q 003581 129 HIYLGSDAV---AKNRGILRQNGITHVLNCVGFVC----PEYFKGDLVYKTLWLQDSPSED---IT----------SILY 188 (809)
Q Consensus 129 ~LYLGs~~~---A~d~e~Lk~lGIT~VINL~~e~~----p~~~~~~i~yl~IpI~D~~~ed---L~----------~~L~ 188 (809)
.||-++... ..+.+.|.++||+.||++....+ |.....++.++++|+.+..... +. ..+.
T Consensus 20 ~lyRS~~l~~lt~~d~~~L~~lgI~tIiDLRs~~E~~~~p~~~~~g~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~ 99 (164)
T PF13350_consen 20 RLYRSGNLSNLTEADLERLRELGIRTIIDLRSPTERERAPDPLIDGVQYVHIPIFGDDASSPDKLAELLQSSADAPRGML 99 (164)
T ss_dssp SEEEES--TT--HHHHHHHHHTT--EEEE-S-HHHHHHHS----TT-EEEE--SS-S-TTH----------HHHHHHHHH
T ss_pred cEEecCCcCcCCHHHHHHHHhCCCCEEEECCCccccccCCCCCcCCceeeeecccccccccccccccccccccchhhHHH
Confidence 588887554 46778999999999999954221 3345568999999997554431 11 0111
Q ss_pred ------------HHHHHHHHHHhcCCEEEEEcCCCCchHHHHHHHHHHhhcCCCHHHHHH
Q 003581 189 ------------DVFDYFEDVREQGGRVFVHCCQGVSRSTSLVIAYLMWREGQSFEDAFQ 236 (809)
Q Consensus 189 ------------eav~fIe~a~~kGgrVLVHC~aGvSRS~tVVIAYLM~~~gmSleeAl~ 236 (809)
...++++......++|||||.+|+.|++.+++..| ..-|.+.++.++
T Consensus 100 ~~Y~~~~~~~~~~~~~~~~~l~~~~~p~l~HC~aGKDRTG~~~alll-~~lGV~~~~I~~ 158 (164)
T PF13350_consen 100 EFYREMLESYAEAYRKIFELLADAPGPVLFHCTAGKDRTGVVAALLL-SLLGVPDEDIIA 158 (164)
T ss_dssp HHHHHGGGSTHHHHHHHHHHHH-TT--EEEE-SSSSSHHHHHHHHHH-HHTT--HHHHHH
T ss_pred HHHHHHHHhhhHHHHHHHHHhccCCCcEEEECCCCCccHHHHHHHHH-HHcCCCHHHHHH
Confidence 11112233334557999999999999987765554 455888776553
No 32
>KOG0445 consensus Actin regulatory protein supervillin (gelsolin/villin family) [Cytoskeleton]
Probab=98.12 E-value=3.7e-06 Score=97.42 Aligned_cols=99 Identities=17% Similarity=0.360 Sum_probs=78.2
Q ss_pred CccccceeeecCCCCCCCccccccccCCCcccCCCCCCeEEEecCCceEEEecCCCChhhhHHHHHHHHHHHHH--hhcC
Q 003581 269 PNSMLRIYRIAPHSSYDPLHLVPKLLNYPVAQGFDTRGAFIVLVPSAIYVWIGKNCSVMMSNRAREAANQVIRY--EKAQ 346 (809)
Q Consensus 269 p~s~~RLYRV~g~S~~dpr~LVpK~eV~~s~sSLNSrDvFILdtps~IYVWiGk~ss~~er~~A~~aA~qI~~~--e~~~ 346 (809)
|-.-..|.||+|... |....|.|..++||++|||||..+..+|.|.|..+|..|+.+|.+++..|+.. .+.+
T Consensus 220 Pyk~vMLlqVkGr~h------VqtRLVeP~~ssln~gdCF~lv~~~~lf~yvG~faNviEk~kas~lc~~I~~k~dLgCt 293 (919)
T KOG0445|consen 220 PYKRVMLLQVKGRRH------VQTRLVEPRASSLNSGDCFLLVSPHCLFLYVGEFANVIEKAKASELCTLIQTKRDLGCT 293 (919)
T ss_pred CCCceEEEEEccccc------ceeEEechhhcccccCceEEEechhHHhhhhhHHHHHHHHhHHHHHHHHHhhcccCCce
Confidence 344467889999754 44447799999999999999999999999999999999999999999998865 2444
Q ss_pred Cc-EEEccCCCC----hhHHHHHhcCCCCCCC
Q 003581 347 GQ-ITSIKEGEE----PLEFWDALVRGQFFAD 373 (809)
Q Consensus 347 ~~-I~vV~EG~E----p~eFW~aLGGk~~y~~ 373 (809)
+. |+.|.|-.- ...||+.|||.+.|+.
T Consensus 294 At~ivtit~~~~~t~~~~~Fw~llg~qs~~~~ 325 (919)
T KOG0445|consen 294 ATYIVTITEINTHTHAAKDFWKLLGGQSSYQS 325 (919)
T ss_pred eEEEEEEeccchhHHHHHHHHHHhCCccchhh
Confidence 43 455555331 4579999999888775
No 33
>KOG1572 consensus Predicted protein tyrosine phosphatase [Defense mechanisms]
Probab=98.11 E-value=1.6e-05 Score=83.33 Aligned_cols=116 Identities=12% Similarity=0.184 Sum_probs=86.7
Q ss_pred cceeecCCeEECChhhhcCHHHHHHCCCcEEEEcccCCCCC----cc-CCCcEEEEEEccCCC------CCch-HHHHHH
Q 003581 122 ECSRIADHIYLGSDAVAKNRGILRQNGITHVLNCVGFVCPE----YF-KGDLVYKTLWLQDSP------SEDI-TSILYD 189 (809)
Q Consensus 122 ~iSeI~p~LYLGs~~~A~d~e~Lk~lGIT~VINL~~e~~p~----~~-~~~i~yl~IpI~D~~------~edL-~~~L~e 189 (809)
+.+.+.++||-++++...+..+|+.++++.||.++.+..|+ ++ ..+|.+.+|.|.-.. ..++ ...+..
T Consensus 59 nFs~V~~~lyRSg~P~~~NfsFL~~L~LksIisL~pE~yp~~nl~f~~~~~Ik~~~i~ie~~k~~~k~P~~~~~~~~i~~ 138 (249)
T KOG1572|consen 59 NFSMVDNGLYRSGFPRPENFSFLKTLHLKSIISLCPEPYPEENLNFLESNGIKLYQIGIEGEKDNKKEPFVNIPDHSIRK 138 (249)
T ss_pred cccccccceeecCCCCccchHHHHHhhhheEEEecCCCCChHHHHHHHhcCceEEEEecccccccccCCCCCChHHHHHH
Confidence 34567889999999999999999999999999998764442 12 357899999996332 2333 334566
Q ss_pred HHHHHHHHHhcCCEEEEEcCCCCchHHHHHHHHHHhhcCCCHHHHHHHHHH
Q 003581 190 VFDYFEDVREQGGRVFVHCCQGVSRSTSLVIAYLMWREGQSFEDAFQYVKA 240 (809)
Q Consensus 190 av~fIe~a~~kGgrVLVHC~aGvSRS~tVVIAYLM~~~gmSleeAl~~VRs 240 (809)
+++++- .+.+.++||||..|..|++++|.+.- +.++|++.-.++.-+.
T Consensus 139 ~l~~ll--d~~N~P~Lihc~rGkhRtg~lVgclR-klq~W~lssil~Ey~~ 186 (249)
T KOG1572|consen 139 ALKVLL--DKRNYPILIHCKRGKHRTGCLVGCLR-KLQNWSLSSILDEYLR 186 (249)
T ss_pred HHHHHh--cccCCceEEecCCCCcchhhhHHHHH-HHhccchhHHHHHHHH
Confidence 666633 34568999999999999998876654 7789988777665443
No 34
>COG3453 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=98.04 E-value=5.5e-05 Score=72.12 Aligned_cols=111 Identities=19% Similarity=0.192 Sum_probs=77.2
Q ss_pred cceeecCCeEECChhhhcCHHHHHHCCCcEEEEcccCCC-CC--cc--------CCCcEEEEEEccCCC-CCchHHHHHH
Q 003581 122 ECSRIADHIYLGSDAVAKNRGILRQNGITHVLNCVGFVC-PE--YF--------KGDLVYKTLWLQDSP-SEDITSILYD 189 (809)
Q Consensus 122 ~iSeI~p~LYLGs~~~A~d~e~Lk~lGIT~VINL~~e~~-p~--~~--------~~~i~yl~IpI~D~~-~edL~~~L~e 189 (809)
.+.+|.+.|+|+++....|+..++.+|++.|||...... +. .+ ..++.|.+||+.-.. +++-
T Consensus 2 ~i~~I~d~lsVsgQi~~~D~~~iaa~GFksiI~nRPDgEe~~QP~~~~i~~aa~~aGl~y~~iPV~~~~iT~~d------ 75 (130)
T COG3453 2 DIRRINDRLSVSGQISPADIASIAALGFKSIICNRPDGEEPGQPGFAAIAAAAEAAGLTYTHIPVTGGGITEAD------ 75 (130)
T ss_pred CceecccceeecCCCCHHHHHHHHHhccceecccCCCCCCCCCCChHHHHHHHHhcCCceEEeecCCCCCCHHH------
Confidence 366899999999999999999999999999999743211 11 11 247899999996432 2221
Q ss_pred HHHHHHHHHhcCCEEEEEcCCCCchHHHHHHHHHHhhcCCCHHHHHHHHHH
Q 003581 190 VFDYFEDVREQGGRVFVHCCQGVSRSTSLVIAYLMWREGQSFEDAFQYVKA 240 (809)
Q Consensus 190 av~fIe~a~~kGgrVLVHC~aGvSRS~tVVIAYLM~~~gmSleeAl~~VRs 240 (809)
+-.|-+..-+.+++||.||+.|- ||.++=.--. ...||+-+++.++=++
T Consensus 76 V~~f~~Al~eaegPVlayCrsGt-Rs~~ly~~~~-~~~gm~~de~~a~g~a 124 (130)
T COG3453 76 VEAFQRALDEAEGPVLAYCRSGT-RSLNLYGLGE-LDGGMSRDEIEALGQA 124 (130)
T ss_pred HHHHHHHHHHhCCCEEeeecCCc-hHHHHHHHHH-HhcCCCHHHHHHHHHh
Confidence 22222233356899999999997 8755422222 5569999988876554
No 35
>KOG2283 consensus Clathrin coat dissociation kinase GAK/PTEN/Auxilin and related tyrosine phosphatases [Signal transduction mechanisms; General function prediction only]
Probab=97.97 E-value=3.1e-05 Score=88.23 Aligned_cols=120 Identities=21% Similarity=0.255 Sum_probs=85.1
Q ss_pred ccccceeecCCeEECChhhhcCHHHHHHC--------------CCcEEEEcccCCCCCccCC--CcEEEEEEccCCCCCc
Q 003581 119 FDKECSRIADHIYLGSDAVAKNRGILRQN--------------GITHVLNCVGFVCPEYFKG--DLVYKTLWLQDSPSED 182 (809)
Q Consensus 119 ~~~~iSeI~p~LYLGs~~~A~d~e~Lk~l--------------GIT~VINL~~e~~p~~~~~--~i~yl~IpI~D~~~ed 182 (809)
++-+++-|+++|..-+++...... +.++ |==.|.||+++. .|... .-+...+++.|...+.
T Consensus 11 ~DLDltYIT~rIIamsfPa~~~es-~yRN~l~dV~~fL~s~H~~~y~vyNL~~er--~yd~~~f~g~V~~~~~~Dh~~P~ 87 (434)
T KOG2283|consen 11 FDLDLTYITSRIIAMSFPAEGIES-LYRNNLEDVVLFLDSKHKDHYKVYNLSSER--LYDPSRFHGRVARFGFDDHNPPP 87 (434)
T ss_pred ccccceeeeeeEEEEeCCCCcchh-hhcCCHHHHHHHHhhccCCceEEEecCccc--cCCccccccceeecCCCCCCCCc
Confidence 445577777777776666553322 2222 223467776422 22222 2245668889988888
Q ss_pred hHHHHHHHHHHHHHHHhc--CCEEEEEcCCCCchHHHHHHHHHHhhcCCC-HHHHHHHHHHHc
Q 003581 183 ITSILYDVFDYFEDVREQ--GGRVFVHCCQGVSRSTSLVIAYLMWREGQS-FEDAFQYVKAAR 242 (809)
Q Consensus 183 L~~~L~eav~fIe~a~~k--GgrVLVHC~aGvSRS~tVVIAYLM~~~gmS-leeAl~~VRs~R 242 (809)
+ ..+..+++-++..+.+ ..-|.|||++|++|++++++||||+..-.. +++|+.+.-.+|
T Consensus 88 L-~~l~~~c~~~~~WL~~d~~nVvvvHCk~Gkgrtg~~icA~L~~~~~~~ta~eald~~~~kR 149 (434)
T KOG2283|consen 88 L-ELLCPFCKSMDNWLSEDPKNVVVVHCKAGKGRTGVMICAYLIYSGISATAEEALDYFNEKR 149 (434)
T ss_pred H-HHHHHHHHCHHHHHhcCccceEEEEccCCCcceEEEEeHHHHhhhhcCCHHHHHHHHhhhh
Confidence 7 5677777777777764 478899999999999999999999997665 999999999999
No 36
>PRK15375 pathogenicity island 1 effector protein StpP; Provisional
Probab=97.94 E-value=4e-05 Score=88.04 Aligned_cols=88 Identities=18% Similarity=0.219 Sum_probs=62.5
Q ss_pred ccCCCCCchHHHHHHHHHHHHHHHhcC---------CEEEEEcCCCCchHHHHHHHHHHhhc-CCCHHHHHHHHHHHcCc
Q 003581 175 LQDSPSEDITSILYDVFDYFEDVREQG---------GRVFVHCCQGVSRSTSLVIAYLMWRE-GQSFEDAFQYVKAARGV 244 (809)
Q Consensus 175 I~D~~~edL~~~L~eav~fIe~a~~kG---------grVLVHC~aGvSRS~tVVIAYLM~~~-gmSleeAl~~VRs~RP~ 244 (809)
+.|...++-...|.+.++.+......+ +..+|||.+|+||||+++++|+|... ..++++.+.-+|..|+.
T Consensus 431 WPDHGVPpST~~LleLvr~Vr~~~q~~~~~~~~~nk~~PVVHCSAGVGRTGTFIAi~llk~~~~~sle~IV~dlR~qRng 510 (535)
T PRK15375 431 WPDHQPLPSTDQLEYLADRVKNSNQNGAPGRSSSDKHLPMIHCLGGVGRTGTMAAALVLKDNPHSNLEQVRADFRNSRNN 510 (535)
T ss_pred CCCCCCCCChHHHHHHHHHHHHhhhcccccccccCCCCceEEcCCCCchHHHHHHHHHHhccccCCHHHHHHHHHhcCCc
Confidence 456655443333444555554432221 23479999999999999999999765 46899999999999997
Q ss_pred -cccChhhHHHHHHHHHHh
Q 003581 245 -TNPNMGFACQLLLCQKRV 262 (809)
Q Consensus 245 -I~PN~gFa~QLlq~EkrL 262 (809)
+--+..+..+|+..+..+
T Consensus 511 ~MVQt~eQy~~l~~~~~~~ 529 (535)
T PRK15375 511 RMLEDASQFVQLKAMQAQL 529 (535)
T ss_pred cccccHHHHHHHHHHHHHH
Confidence 667777777777776655
No 37
>PF04179 Init_tRNA_PT: Initiator tRNA phosphoribosyl transferase ; InterPro: IPR007306 This enzyme (2.4.2 from EC) modifies exclusively the initiator tRNA in position 64 using 5'-phosphoribosyl-1'-pyrophosphate as the modification donor. As the initiator tRNA participates both in the initiation and elongation of translation, the 2'-O-ribosyl phosphate modification discriminates the initiator tRNAs from the elongator tRNAs. ; GO: 0016763 transferase activity, transferring pentosyl groups
Probab=97.87 E-value=9.1e-05 Score=84.92 Aligned_cols=105 Identities=20% Similarity=0.220 Sum_probs=79.9
Q ss_pred eecCCeEECChhhhcCH----HHHHHCCCcEEEEcccCCCC-CccCCCcEEEEEEccCCC--CCchHHHHHHHHHHHHHH
Q 003581 125 RIADHIYLGSDAVAKNR----GILRQNGITHVLNCVGFVCP-EYFKGDLVYKTLWLQDSP--SEDITSILYDVFDYFEDV 197 (809)
Q Consensus 125 eI~p~LYLGs~~~A~d~----e~Lk~lGIT~VINL~~e~~p-~~~~~~i~yl~IpI~D~~--~edL~~~L~eav~fIe~a 197 (809)
.++.+||+|........ ..-....+..||+|.+.... ........|+++++.... ..++...|.+++.|+...
T Consensus 291 ~~~~~i~ig~~~~~l~~~~~~~~~~~~~~~~vI~~s~~~~~~~~~~~~~~~L~l~i~~~K~gs~~LR~~LP~i~~fv~~~ 370 (451)
T PF04179_consen 291 PGTTGIYIGKISSNLAISKAQLPDLESEFDCVINCSESPTPKESWPKSPKYLHLPIPSSKKGSRDLRKALPKICSFVRSH 370 (451)
T ss_pred cCCCCeEEeccCCccccchhhccccCCCcCEEEEcCCCcccccccCCCceEEeCcCCCCcccHHHHHHHHHHHHHHHHHH
Confidence 35779999987662211 11234568899998754322 334567789999997543 346888999999999999
Q ss_pred Hhc--CCEEEEEcCCCCchHHHHHHHHHHhhcCC
Q 003581 198 REQ--GGRVFVHCCQGVSRSTSLVIAYLMWREGQ 229 (809)
Q Consensus 198 ~~k--GgrVLVHC~aGvSRS~tVVIAYLM~~~gm 229 (809)
+.+ +++|||||..|...|++|++|.|++.++.
T Consensus 371 L~~~~~~~iLV~C~sGkDlSVgVaLaILc~~Fd~ 404 (451)
T PF04179_consen 371 LSSDPGKPILVCCDSGKDLSVGVALAILCKLFDD 404 (451)
T ss_pred hcccCCCcEEEEcCCcchHHHHHHHHHHHHhcCc
Confidence 888 89999999999999999999999998653
No 38
>PF00102 Y_phosphatase: Protein-tyrosine phosphatase; InterPro: IPR000242 Protein tyrosine (pTyr) phosphorylation is a common post-translational modification which can create novel recognition motifs for protein interactions and cellular localisation, affect protein stability, and regulate enzyme activity. Consequently, maintaining an appropriate level of protein tyrosine phosphorylation is essential for many cellular functions. Tyrosine-specific protein phosphatases (PTPase; 3.1.3.48 from EC) catalyse the removal of a phosphate group attached to a tyrosine residue, using a cysteinyl-phosphate enzyme intermediate. These enzymes are key regulatory components in signal transduction pathways (such as the MAP kinase pathway) and cell cycle control, and are important in the control of cell growth, proliferation, differentiation and transformation [, ]. The PTP superfamily can be divided into four subfamilies []: (1) pTyr-specific phosphatases (2) dual specificity phosphatases (dTyr and dSer/dThr) (3) Cdc25 phosphatases (dTyr and/or dThr) (4) LMW (low molecular weight) phosphatases Based on their cellular localisation, PTPases are also classified as: Receptor-like, which are transmembrane receptors that contain PTPase domains [] Non-receptor (intracellular) PTPases [] All PTPases carry the highly conserved active site motif C(X)5R (PTP signature motif), employ a common catalytic mechanism, and share a similar core structure made of a central parallel beta-sheet with flanking alpha-helices containing a beta-loop-alpha-loop that encompasses the PTP signature motif []. Functional diversity between PTPases is endowed by regulatory domains and subunits. This entry repesents several receptor and non-receptor protein-tyrosine phosphatases. Structurally, all known receptor PTPases, are made up of a variable length extracellular domain, followed by a transmembrane region and a C-terminal catalytic cytoplasmic domain. Some of the receptor PTPases contain fibronectin type III (FN-III) repeats, immunoglobulin-like domains, MAM domains or carbonic anhydrase-like domains in their extracellular region. The cytoplasmic region generally contains two copies of the PTPase domain. The first seems to have enzymatic activity, while the second is inactive. The inactive domains of tandem phosphatases can be divided into two classes. Those which bind phosphorylated tyrosine residues may recruit multi-phosphorylated substrates for the adjacent active domains and are more conserved, while the other class have accumulated several variable amino acid substitutions and have a complete loss of tyrosine binding capability. The second class shows a release of evolutionary constraint for the sites around the catalytic centre, which emphasises a difference in function from the first group. There is a region of higher conservation common to both classes, suggesting a new regulatory centre []. PTPase domains consist of about 300 amino acids. There are two conserved cysteines, the second one has been shown to be absolutely required for activity. Furthermore, a number of conserved residues in its immediate vicinity have also been shown to be important.; GO: 0004725 protein tyrosine phosphatase activity, 0006470 protein dephosphorylation; PDB: 3O4T_A 3O4S_A 3O4U_A 2A3K_A 2QDP_A 2QDC_A 2QDM_A 2HVL_A 1ZC0_A 3D44_A ....
Probab=97.64 E-value=0.00021 Score=72.66 Aligned_cols=64 Identities=17% Similarity=0.307 Sum_probs=50.0
Q ss_pred HHHHHHHHHHHh----cCCEEEEEcCCCCchHHHHHHHHHHhh-----cCCCHHHHHHHHHHHcCccccChhh
Q 003581 188 YDVFDYFEDVRE----QGGRVFVHCCQGVSRSTSLVIAYLMWR-----EGQSFEDAFQYVKAARGVTNPNMGF 251 (809)
Q Consensus 188 ~eav~fIe~a~~----kGgrVLVHC~aGvSRS~tVVIAYLM~~-----~gmSleeAl~~VRs~RP~I~PN~gF 251 (809)
..++++++...+ .+++|+|||..|.|||++++++.+|.. ...++.+++..||+.|+.+-.+...
T Consensus 153 ~~~~~~~~~v~~~~~~~~~pivVhc~~G~gRsg~f~~~~~~~~~~~~~~~~~v~~~~~~lR~~R~~~i~~~~q 225 (235)
T PF00102_consen 153 ESFLDFIRKVNKSKDDPNGPIVVHCSDGVGRSGTFCAIDILIEQLKKEGEVDVFEIVKKLRQQRPGAIQSPEQ 225 (235)
T ss_dssp HHHHHHHHHHHHHHSTTSSEEEEESSSSSHHHHHHHHHHHHHHHHHHHSEECHHHHHHHHHTTSTTSSSSHHH
T ss_pred chhhhhhhhccccccCCccceEeecccccccccccccchhhccccccccchhhHHHHHHHHhhCCCccCCHHH
Confidence 344455554443 459999999999999999999998754 2479999999999999988777543
No 39
>PF14566 PTPlike_phytase: Inositol hexakisphosphate; PDB: 1U24_A 2PSZ_B 3MOZ_A 3D1H_B 2B4P_B 3D1Q_A 2B4O_A 3MMJ_B 1U25_A 1U26_B ....
Probab=97.64 E-value=9.9e-05 Score=72.65 Aligned_cols=59 Identities=17% Similarity=0.376 Sum_probs=44.4
Q ss_pred CCCcEEEEEEccCCCCCchHHHHHHHHHHHHHHHhcCCEEEEEcCCCCchHHHHHHHHHHh
Q 003581 165 KGDLVYKTLWLQDSPSEDITSILYDVFDYFEDVREQGGRVFVHCCQGVSRSTSLVIAYLMW 225 (809)
Q Consensus 165 ~~~i~yl~IpI~D~~~edL~~~L~eav~fIe~a~~kGgrVLVHC~aGvSRS~tVVIAYLM~ 225 (809)
..++.|++||+.|...+. ...|++.++++... .++..+.+||.+|.||+.+..+.|.|.
T Consensus 90 ~~g~~Y~Ripitd~~~P~-~~~iD~fi~~v~~~-p~~~~l~fhC~~G~GRTTt~Mv~~~li 148 (149)
T PF14566_consen 90 GNGLRYYRIPITDHQAPD-PEDIDAFINFVKSL-PKDTWLHFHCQAGRGRTTTFMVMYDLI 148 (149)
T ss_dssp HTT-EEEEEEE-TTS----HHHHHHHHHHHHTS--TT-EEEEE-SSSSHHHHHHHHHHHHH
T ss_pred cCCceEEEEeCCCcCCCC-HHHHHHHHHHHHhC-CCCCeEEEECCCCCCHHHHHHHHHHHh
Confidence 357899999999987765 47788889988888 678999999999999999988888764
No 40
>COG2365 Protein tyrosine/serine phosphatase [Signal transduction mechanisms]
Probab=97.47 E-value=0.00016 Score=76.86 Aligned_cols=122 Identities=15% Similarity=0.153 Sum_probs=76.5
Q ss_pred CCeEECChhhhcCHH--HHHHCCCcEEEEcccCCCC--CccCCCc----EEEEEEccCCCCC-chHHHHHHHHHHHHHHH
Q 003581 128 DHIYLGSDAVAKNRG--ILRQNGITHVLNCVGFVCP--EYFKGDL----VYKTLWLQDSPSE-DITSILYDVFDYFEDVR 198 (809)
Q Consensus 128 p~LYLGs~~~A~d~e--~Lk~lGIT~VINL~~e~~p--~~~~~~i----~yl~IpI~D~~~e-dL~~~L~eav~fIe~a~ 198 (809)
..+|.++.+...+.. .+..++|..+|++.++..- ..+..+. ....+...+.... +-....+....+++-.+
T Consensus 53 ~~~~Rs~~p~~~~~~~~~~~~~~l~~~i~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~~~l~~ 132 (249)
T COG2365 53 IIDYRSGQPVPVQPDPELLDALYLKTIINLRDESNTNVELYTDHLINWDKAAIIMFESYRSFPTREDAAERLVELLQLLA 132 (249)
T ss_pred eeEcCCCCcccccCCccccccccccccccccccchhhhhhhhhhhhhhccccchhhhhhccCccchhhHHHHHHHHHHHh
Confidence 457778877776655 7777888888887641110 1111111 1112222222211 11122344455555555
Q ss_pred hcC-CEEEEEcCCCCchHHHHHHHHHHhhcCCCHHHHHHHHHHHcCccccCh
Q 003581 199 EQG-GRVFVHCCQGVSRSTSLVIAYLMWREGQSFEDAFQYVKAARGVTNPNM 249 (809)
Q Consensus 199 ~kG-grVLVHC~aGvSRS~tVVIAYLM~~~gmSleeAl~~VRs~RP~I~PN~ 249 (809)
.++ ++||+||.+|..|+|.+++.|++...+..-..+-++++..++......
T Consensus 133 ~~e~~PvL~HC~~GkdRTGl~~al~r~~~~~~~~~v~~dyl~~~~~~~~~~~ 184 (249)
T COG2365 133 DAENGPVLIHCTAGKDRTGLVAALYRKLVGGSDETVAADYLLTNRYGEPERR 184 (249)
T ss_pred hcccCCEEEecCCCCcchHHHHHHHHHHhCCchhHHHHHHHHcCCccchhhH
Confidence 554 999999999999999999999999988888888888888877654443
No 41
>PHA02742 protein tyrosine phosphatase; Provisional
Probab=97.43 E-value=0.00045 Score=75.40 Aligned_cols=48 Identities=13% Similarity=0.178 Sum_probs=39.5
Q ss_pred CCEEEEEcCCCCchHHHHHHHHHHhh-----cCCCHHHHHHHHHHHcCccccC
Q 003581 201 GGRVFVHCCQGVSRSTSLVIAYLMWR-----EGQSFEDAFQYVKAARGVTNPN 248 (809)
Q Consensus 201 GgrVLVHC~aGvSRS~tVVIAYLM~~-----~gmSleeAl~~VRs~RP~I~PN 248 (809)
.++|+|||.+|+||||++++...+.. ...+..+++..+|+.|+..-.+
T Consensus 229 ~~PIvVHCsaGvGRTGtF~aid~~i~~~~~~~~v~v~~~V~~lR~qR~~~Vqt 281 (303)
T PHA02742 229 EPPILVHCSAGLDRAGAFCAIDICISKYNERAIIPLLSIVRDLRKQRHNCLSL 281 (303)
T ss_pred CCCeEEECCCCCchhHHHHHHHHHHHHHHhcCCCCHHHHHHHHHhhcccccCC
Confidence 37999999999999999988876543 2557889999999999976554
No 42
>KOG2386 consensus mRNA capping enzyme, guanylyltransferase (alpha) subunit [RNA processing and modification]
Probab=97.40 E-value=0.0003 Score=79.02 Aligned_cols=91 Identities=21% Similarity=0.275 Sum_probs=65.3
Q ss_pred CCCcEEEEEEccCC---CCCchHHHHH-HHHHHHHHHHhcCCEEEEEcCCCCchHHHHHHHHHHhhcCCCHHHHHHHHHH
Q 003581 165 KGDLVYKTLWLQDS---PSEDITSILY-DVFDYFEDVREQGGRVFVHCCQGVSRSTSLVIAYLMWREGQSFEDAFQYVKA 240 (809)
Q Consensus 165 ~~~i~yl~IpI~D~---~~edL~~~L~-eav~fIe~a~~kGgrVLVHC~aGvSRS~tVVIAYLM~~~gmSleeAl~~VRs 240 (809)
..++.|+.+...-. +.......|. .+-+|++.....+.=|+|||.+|++|++-++++|||...+|+..+|++.+..
T Consensus 84 ~~g~~Y~K~~c~g~~~vp~~~~v~~fv~~v~~f~~~~~~~~~LI~vhcthG~NrtgyLI~~yL~~~~~~s~~~aik~f~~ 163 (393)
T KOG2386|consen 84 ERGVKYLKRNCPGRGVVPRTELVDKFVKLVKGFVDDTKLDDELIGVHCTHGLNRTGYLICAYLADVGGYSSSEAIKRFAD 163 (393)
T ss_pred ccceeEEEeccCCcccCCCccchHHHHHHHHHHHhcccCCCCEEEEeCCCcccccceeeeeeeeeccCccHHHHHHHHHH
Confidence 44566666655322 2222333333 4444666677788999999999999999999999999999999999999999
Q ss_pred HcCccccChhhHHHH
Q 003581 241 ARGVTNPNMGFACQL 255 (809)
Q Consensus 241 ~RP~I~PN~gFa~QL 255 (809)
.|+...--......|
T Consensus 164 ~r~~gi~k~dyi~~L 178 (393)
T KOG2386|consen 164 ARPPGIEKQDYIDAL 178 (393)
T ss_pred hCCCccCchHHHHHH
Confidence 998653333333333
No 43
>PHA02746 protein tyrosine phosphatase; Provisional
Probab=97.33 E-value=0.00066 Score=74.83 Aligned_cols=48 Identities=15% Similarity=0.250 Sum_probs=40.0
Q ss_pred CEEEEEcCCCCchHHHHHHHHHHh-----hcCCCHHHHHHHHHHHcCccccCh
Q 003581 202 GRVFVHCCQGVSRSTSLVIAYLMW-----REGQSFEDAFQYVKAARGVTNPNM 249 (809)
Q Consensus 202 grVLVHC~aGvSRS~tVVIAYLM~-----~~gmSleeAl~~VRs~RP~I~PN~ 249 (809)
++|+|||.+|+||||++|+...+. ....+..+++..+|..|+..-.+.
T Consensus 248 ~PIvVHCsaGvGRTGtfcaid~~l~~l~~~~~vdv~~~V~~lR~qR~~~Vqt~ 300 (323)
T PHA02746 248 GPIVVHCSAGIGRAGTFCAIDNALEQLEKEKEVCLGEIVLKIRKQRHSSVFLP 300 (323)
T ss_pred CCEEEEcCCCCCcchhHHHHHHHHHHHHhcCCCCHHHHHHHHHhcccccCCCH
Confidence 799999999999999998875443 246789999999999999776653
No 44
>PHA02747 protein tyrosine phosphatase; Provisional
Probab=97.29 E-value=0.00083 Score=73.71 Aligned_cols=48 Identities=17% Similarity=0.326 Sum_probs=40.3
Q ss_pred CEEEEEcCCCCchHHHHHHHHHHh-----hcCCCHHHHHHHHHHHcCccccCh
Q 003581 202 GRVFVHCCQGVSRSTSLVIAYLMW-----REGQSFEDAFQYVKAARGVTNPNM 249 (809)
Q Consensus 202 grVLVHC~aGvSRS~tVVIAYLM~-----~~gmSleeAl~~VRs~RP~I~PN~ 249 (809)
++|+|||.+|+||||++++..++. ....+..+++..+|..|+..-.+.
T Consensus 230 ~PIvVHCsaGvGRtGtfcaidi~i~~l~~~~~v~v~~~V~~lR~qR~~~Vqt~ 282 (312)
T PHA02747 230 CPIVVHCSDGVGKTGIFCAVDICLNQLVKRKAICLAKTAEKIREQRHAGIMNF 282 (312)
T ss_pred CCEEEEecCCCcchhHHHHHHHHHHHHHhcCCCCHHHHHHHHHhccccccCCH
Confidence 699999999999999999887543 346789999999999999876553
No 45
>PHA02740 protein tyrosine phosphatase; Provisional
Probab=97.28 E-value=0.00086 Score=73.24 Aligned_cols=56 Identities=16% Similarity=0.215 Sum_probs=43.5
Q ss_pred CCEEEEEcCCCCchHHHHHHHHHHh-----hcCCCHHHHHHHHHHHcCccccC---hhhHHHHH
Q 003581 201 GGRVFVHCCQGVSRSTSLVIAYLMW-----REGQSFEDAFQYVKAARGVTNPN---MGFACQLL 256 (809)
Q Consensus 201 GgrVLVHC~aGvSRS~tVVIAYLM~-----~~gmSleeAl~~VRs~RP~I~PN---~gFa~QLl 256 (809)
.++|+|||.+|+||||++++...+. ....++.+++..+|+.|+..-.+ -.|..+++
T Consensus 221 ~~PIVVHCSaGvGRTGtFcaiDi~l~~~~~~~~vdi~~~V~~lR~qR~~~Vqt~~QY~F~y~~l 284 (298)
T PHA02740 221 IAPIIIDCIDGISSSAVFCVFDICATEFDKTGMLSIANALKKVRQKKYGCMNCLDDYVFCYHLI 284 (298)
T ss_pred CCCEEEECCCCCchhHHHHHHHHHHHHHHhcCcccHHHHHHHHHhhCccccCCHHHHHHHHHHH
Confidence 4799999999999999998877554 34568999999999999976544 34555533
No 46
>PHA02738 hypothetical protein; Provisional
Probab=97.01 E-value=0.0029 Score=69.80 Aligned_cols=49 Identities=14% Similarity=0.162 Sum_probs=39.2
Q ss_pred CCEEEEEcCCCCchHHHHHHHHHHh-----hcCCCHHHHHHHHHHHcCccccCh
Q 003581 201 GGRVFVHCCQGVSRSTSLVIAYLMW-----REGQSFEDAFQYVKAARGVTNPNM 249 (809)
Q Consensus 201 GgrVLVHC~aGvSRS~tVVIAYLM~-----~~gmSleeAl~~VRs~RP~I~PN~ 249 (809)
.++|+|||.+|+||||++++.-.+. ....+..+++..||+.|+..-.+.
T Consensus 227 ~~PIVVHCs~GiGRtGtFcaidi~i~~~~~~~~vdv~~~V~~lR~qR~~~vqt~ 280 (320)
T PHA02738 227 PPPIVVHCNAGLGRTPCYCVVDISISRFDACATVSIPSIVSSIRNQRYYSLFIP 280 (320)
T ss_pred CCCeEEEcCCCCChhhhhhHHHHHHHHHHhcCCcCHHHHHHHHHhhhhhccCCH
Confidence 3689999999999999987766433 235688999999999999765553
No 47
>KOG0792 consensus Protein tyrosine phosphatase PTPMEG, contains FERM domain [Signal transduction mechanisms]
Probab=96.92 E-value=0.0027 Score=77.77 Aligned_cols=87 Identities=21% Similarity=0.330 Sum_probs=61.9
Q ss_pred cCCCCCchHHHHHHHHHHHHHHHhc-CCEEEEEcCCCCchHHHHHHHHHHhh-----cCCCHHHHHHHHHHHcCccccC-
Q 003581 176 QDSPSEDITSILYDVFDYFEDVREQ-GGRVFVHCCQGVSRSTSLVIAYLMWR-----EGQSFEDAFQYVKAARGVTNPN- 248 (809)
Q Consensus 176 ~D~~~edL~~~L~eav~fIe~a~~k-GgrVLVHC~aGvSRS~tVVIAYLM~~-----~gmSleeAl~~VRs~RP~I~PN- 248 (809)
.|.+.++-...|-+-++.|..+++. +-+|+|||.+|+||||+++++=+|.. +....-+.+..+|..|..+-++
T Consensus 1037 PDHg~P~D~~~FL~FleevrsvR~~t~pPilvHCSAGiGRTGVlIl~e~~l~lle~Ne~vdi~divr~mR~QR~~mVQT~ 1116 (1144)
T KOG0792|consen 1037 PDHGVPDDPNDFLDFLEEVRSVRRGTNPPILVHCSAGIGRTGVLILMETALCLLEHNEPVDILDIVRTMRDQRAMMVQTL 1116 (1144)
T ss_pred ccCCCCCChHHHHHHHHHHHHHhccCCCCeEEEccCCCCcceehHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhhhccch
Confidence 4565555555566666666666665 56999999999999999876544432 3567778899999999877666
Q ss_pred --hhhHHHHHH-HHHHh
Q 003581 249 --MGFACQLLL-CQKRV 262 (809)
Q Consensus 249 --~gFa~QLlq-~EkrL 262 (809)
-.|.||++. +-++.
T Consensus 1117 ~QYkFVyevil~~l~~~ 1133 (1144)
T KOG0792|consen 1117 SQYKFVYEVILRVLKRG 1133 (1144)
T ss_pred HHhhHHHHHHHHHHHhc
Confidence 468888764 44443
No 48
>COG5599 PTP2 Protein tyrosine phosphatase [Signal transduction mechanisms]
Probab=96.06 E-value=0.012 Score=63.26 Aligned_cols=46 Identities=22% Similarity=0.461 Sum_probs=32.3
Q ss_pred cCCCCCchHHHHHHHHHHHHHHH---hcCCEEEEEcCCCCchHHHHHHHHHHh
Q 003581 176 QDSPSEDITSILYDVFDYFEDVR---EQGGRVFVHCCQGVSRSTSLVIAYLMW 225 (809)
Q Consensus 176 ~D~~~edL~~~L~eav~fIe~a~---~kGgrVLVHC~aGvSRS~tVVIAYLM~ 225 (809)
.|...+++. +..++++... -++++++|||.||+||+|++++.-.+.
T Consensus 194 ~D~~~p~i~----sl~~~~~sl~~sp~~t~piiVHCSAGvGRTGTFIalD~ll 242 (302)
T COG5599 194 VDFNVPDIR----SLTEVIHSLNDSPVRTGPIIVHCSAGVGRTGTFIALDILL 242 (302)
T ss_pred cccCCcCHH----HHHHHHHHhhcCcCCCCCEEEEeccCCCCcceeeeHHHHH
Confidence 477666653 3444554443 257999999999999999997766443
No 49
>KOG0789 consensus Protein tyrosine phosphatase [Signal transduction mechanisms]
Probab=95.74 E-value=0.03 Score=62.70 Aligned_cols=50 Identities=16% Similarity=0.255 Sum_probs=37.5
Q ss_pred cCCEEEEEcCCCCchHHHHHHHHHHhh---c---CCCHHHHHHHHHHHcCccccCh
Q 003581 200 QGGRVFVHCCQGVSRSTSLVIAYLMWR---E---GQSFEDAFQYVKAARGVTNPNM 249 (809)
Q Consensus 200 kGgrVLVHC~aGvSRS~tVVIAYLM~~---~---gmSleeAl~~VRs~RP~I~PN~ 249 (809)
+.+++.|||.+|+||++++++.-.+.. . .....+.+..+|..|+.+..+.
T Consensus 298 ~~~P~vVhcsaG~gRtgt~v~~~~~~~~~~~~~~~~~~~~~~~~iR~qR~~~vqt~ 353 (415)
T KOG0789|consen 298 KQEPIEVHCSAGAGRAGTLVLIEHALIELQGPEGEPPIDEILREIRYQRPGAVQSP 353 (415)
T ss_pred CCCCeEEECCCCCCccchHHHHHHHHHHHhcCCCCccHHHHHHHHHHHhhhcccch
Confidence 468999999999999999996552222 2 2348888888999998665543
No 50
>KOG0790 consensus Protein tyrosine phosphatase Corkscrew and related SH2 domain enzymes [Signal transduction mechanisms]
Probab=95.67 E-value=0.013 Score=66.61 Aligned_cols=47 Identities=21% Similarity=0.499 Sum_probs=35.8
Q ss_pred cCCEEEEEcCCCCchHHHHHHH-HHHh---hc----CCCHHHHHHHHHHHcCccc
Q 003581 200 QGGRVFVHCCQGVSRSTSLVIA-YLMW---RE----GQSFEDAFQYVKAARGVTN 246 (809)
Q Consensus 200 kGgrVLVHC~aGvSRS~tVVIA-YLM~---~~----gmSleeAl~~VRs~RP~I~ 246 (809)
.-|+|.|||.+|+||++++++- .||- .. .++....+++||..|....
T Consensus 450 ~AgpIvVHCSAGIGrTGTfiViD~lld~I~~~Gldc~iDi~ktIqmVRsqRSGmV 504 (600)
T KOG0790|consen 450 DAGPIVVHCSAGIGRTGTFIVIDMLLDQIREKGLDCDIDIQKTIQMVRSQRSGMV 504 (600)
T ss_pred ccCcEEEEccCCcCCcceEEEhHHHHHHHHhcCCCCcccHHHHHHHHHHHhcchh
Confidence 4479999999999999987543 3332 23 4578899999999998653
No 51
>KOG0260 consensus RNA polymerase II, large subunit [Transcription]
Probab=94.64 E-value=0.25 Score=61.86 Aligned_cols=9 Identities=22% Similarity=0.324 Sum_probs=4.2
Q ss_pred cCcccCCCC
Q 003581 65 RPVEQWPRA 73 (809)
Q Consensus 65 ~~~~~~p~~ 73 (809)
|+-+-|+++
T Consensus 772 rIpFGF~~R 780 (1605)
T KOG0260|consen 772 RIPFGFPKR 780 (1605)
T ss_pred ccccCCCcc
Confidence 444445444
No 52
>KOG0791 consensus Protein tyrosine phosphatase, contains fn3 domain [Signal transduction mechanisms]
Probab=93.79 E-value=0.21 Score=55.97 Aligned_cols=62 Identities=18% Similarity=0.230 Sum_probs=42.9
Q ss_pred cCCEEEEEcCCCCchHHHHHHHHHH-hhcCC----CHHHHHHHHHHHcCccccChhhHHHHHHHHHH
Q 003581 200 QGGRVFVHCCQGVSRSTSLVIAYLM-WREGQ----SFEDAFQYVKAARGVTNPNMGFACQLLLCQKR 261 (809)
Q Consensus 200 kGgrVLVHC~aGvSRS~tVVIAYLM-~~~gm----SleeAl~~VRs~RP~I~PN~gFa~QLlq~Ekr 261 (809)
..+.++|||.+|+||++|.++.--+ +..+- +.-..+..+|..|+...++....--|-|+-..
T Consensus 286 ~~~p~iVhCSAGVgRTGTFiald~LLqq~~~~~~vdi~~iv~~lR~~R~~mVqte~Qyvfl~~c~~~ 352 (374)
T KOG0791|consen 286 SKGPTIVHCSAGVGRTGTFIALDRLLQQIDSEETVDIFGVVLELRSARMLMVQTEDQYVFLHQCVLE 352 (374)
T ss_pred CCCceeEEeecccccccchHhHHHHHHHhcccccccHHHHHHHhhhccccccchHHHHHHHHHHHHH
Confidence 3689999999999999999776533 33222 34455666777888888887655555554433
No 53
>PF14671 DSPn: Dual specificity protein phosphatase, N-terminal half; PDB: 1OHD_A 1OHE_A 1OHC_A.
Probab=93.44 E-value=0.32 Score=48.21 Aligned_cols=101 Identities=22% Similarity=0.288 Sum_probs=54.2
Q ss_pred ecCCeEECChhhhcCHHHHHHCCCcEEEEcccCCCCCccCCCcEEEEEEccCCCCCchHHHHHHHHHHHHHHHhc---CC
Q 003581 126 IADHIYLGSDAVAKNRGILRQNGITHVLNCVGFVCPEYFKGDLVYKTLWLQDSPSEDITSILYDVFDYFEDVREQ---GG 202 (809)
Q Consensus 126 I~p~LYLGs~~~A~d~e~Lk~lGIT~VINL~~e~~p~~~~~~i~yl~IpI~D~~~edL~~~L~eav~fIe~a~~k---Gg 202 (809)
|.++||.+..... .+...=+|-.++-+ .+.|..+ ..|.+.-++ .++.+-+..+++.++. .+
T Consensus 4 i~drLyf~~~~~~-----p~~~~~~~yF~iD~---------~l~Y~~F-~~DFGPlnL-~~lyrfc~~l~~~L~~~~~~~ 67 (141)
T PF14671_consen 4 IPDRLYFASLRNK-----PKSTPNTHYFSIDD---------ELVYENF-YADFGPLNL-AQLYRFCCKLNKKLKSPELKK 67 (141)
T ss_dssp SSSSEEEEE-SS---------BTTEEEEE-TT---------TS----S-SS------H-HHHHHHHHHHHHHHH-GGGTT
T ss_pred CCCcEEEEEeCCC-----CCCCCCcEEEEeCC---------eEEEecc-cCcCCCccH-HHHHHHHHHHHHHHcCHHhcC
Confidence 5578888876542 22333345555422 2233333 356676776 4555566666666654 57
Q ss_pred EEEEEcCCCCc--h--HHHHHHHHHHhhcCCCHHHHHHHHHHHc
Q 003581 203 RVFVHCCQGVS--R--STSLVIAYLMWREGQSFEDAFQYVKAAR 242 (809)
Q Consensus 203 rVLVHC~aGvS--R--S~tVVIAYLM~~~gmSleeAl~~VRs~R 242 (809)
+.+|||...-. | ++.++.||+|...||+.++|++.+...-
T Consensus 68 k~iv~yts~d~~kRaNAA~Lig~y~Vi~l~~spe~A~~~l~~~~ 111 (141)
T PF14671_consen 68 KKIVHYTSSDPKKRANAAFLIGAYAVIYLGMSPEEAYKPLASIQ 111 (141)
T ss_dssp SEEEEEE-S-HHHHHHHHHHHHHHHHHTS---HHHHHHHHTTTT
T ss_pred CeEEEECCCChhHHHHHHHHHHHHHHHhcCCCHHHHHHHHHhcC
Confidence 88888877544 3 4788999999999999999999987764
No 54
>KOG1984 consensus Vesicle coat complex COPII, subunit SFB3 [Intracellular trafficking, secretion, and vesicular transport]
Probab=92.83 E-value=0.29 Score=59.74 Aligned_cols=35 Identities=14% Similarity=0.389 Sum_probs=30.7
Q ss_pred cCCCcccCCCCCCeEEEecCCceEEEecCCCChhh
Q 003581 294 LNYPVAQGFDTRGAFIVLVPSAIYVWIGKNCSVMM 328 (809)
Q Consensus 294 eV~~s~sSLNSrDvFILdtps~IYVWiGk~ss~~e 328 (809)
-|..+...|+.++||+|+.+.++|+|+|+.++...
T Consensus 880 ~VraS~e~l~negiYll~nG~~~ylwvg~sv~~~l 914 (1007)
T KOG1984|consen 880 AVRASSEFLSNEGIYLLDNGQKIYLWVGESVDPDL 914 (1007)
T ss_pred ceecchhhccCCceEEEecCcEEEEEecCCCCHHH
Confidence 44567789999999999999999999999998754
No 55
>KOG0793 consensus Protein tyrosine phosphatase [Signal transduction mechanisms]
Probab=89.75 E-value=1.1 Score=53.89 Aligned_cols=60 Identities=13% Similarity=0.297 Sum_probs=41.3
Q ss_pred CCEEEEEcCCCCchHHHHHHHHHH----hh--cCCCHHHHHHHHHHHcCcc-ccChhhHHHHHHHHH
Q 003581 201 GGRVFVHCCQGVSRSTSLVIAYLM----WR--EGQSFEDAFQYVKAARGVT-NPNMGFACQLLLCQK 260 (809)
Q Consensus 201 GgrVLVHC~aGvSRS~tVVIAYLM----~~--~gmSleeAl~~VRs~RP~I-~PN~gFa~QLlq~Ek 260 (809)
.-+|+|||..|-||+++-|+-=++ .+ ...+....++++|..||.+ .-...|..-|.-...
T Consensus 927 ScpIiVH~sdGaGRTG~YiliDmvl~Rm~kGakeIDIaATlEHlRDQR~GmVaTkdQFef~l~aVAe 993 (1004)
T KOG0793|consen 927 SCPIIVHCSDGAGRTGTYILIDMVLNRMAKGAKEIDIAATLEHLRDQRPGMVATKDQFEFALTAVAE 993 (1004)
T ss_pred CCceEEEccCCCCccceeeeHHHHHHHHhccchhhhHHHHHHHHhhcCCcceeehhhhHHHHHHHHH
Confidence 468999999999999986544332 22 2457777899999999966 344555555544433
No 56
>PF00626 Gelsolin: Gelsolin repeat; InterPro: IPR007123 Gelsolin is a cytoplasmic, calcium-regulated, actin-modulating protein that binds to the barbed ends of actin filaments, preventing monomer exchange (end-blocking or capping) []. It can promote nucleation (the assembly of monomers into filaments), as well as sever existing filaments. In addition, this protein binds with high affinity to fibronectin. Plasma gelsolin and cytoplasmic gelsolin are derived from a single gene by alternate initiation sites and differential splicing. Sequence comparisons indicate an evolutionary relationship between gelsolin, villin, fragmin and severin []. Six large repeating segments occur in gelsolin and villin, and 3 similar segments in severin and fragmin. While the multiple repeats have yet to be related to any known function of the actin-severing proteins, the superfamily appears to have evolved from an ancestral sequence of 120 to 130 amino acid residues [].; PDB: 3FG6_F 1RGI_G 2FGH_A 1D0N_B 3EGD_B 2NUP_B 2NUT_B 3EGX_B 1JHW_A 1J72_A ....
Probab=89.73 E-value=0.27 Score=42.00 Aligned_cols=32 Identities=25% Similarity=0.234 Sum_probs=27.5
Q ss_pred cccccccccccCCceEEEEEccCCCCCCcceEEEEecCc
Q 003581 718 SKVESSSFQVLDSRSVYILLAPDTSLGQMSRVFCMSGWG 756 (809)
Q Consensus 718 ~k~~~~~~~~lds~sv~i~~~p~~~~~~~~~lyiwvG~~ 756 (809)
.+.-.++.+.|++..+||+-... .||+|+|+.
T Consensus 5 ~~~~~~s~~~L~s~~~yIld~~~-------~i~vW~G~~ 36 (76)
T PF00626_consen 5 PEQVPLSQSSLNSDDCYILDCGY-------EIFVWVGKK 36 (76)
T ss_dssp EEEESSSGGGEETTSEEEEEESS-------EEEEEEHTT
T ss_pred CCcCCCCHHHcCCCCEEEEEeCC-------CcEEEEecc
Confidence 45566888999999999998876 799999996
No 57
>COG5028 Vesicle coat complex COPII, subunit SEC24/subunit SFB2/subunit SFB3 [Intracellular trafficking and secretion]
Probab=87.89 E-value=1.1 Score=54.36 Aligned_cols=32 Identities=16% Similarity=0.524 Sum_probs=28.2
Q ss_pred CcccCCCCCCeEEEecCCceEEEecCCCChhh
Q 003581 297 PVAQGFDTRGAFIVLVPSAIYVWIGKNCSVMM 328 (809)
Q Consensus 297 ~s~sSLNSrDvFILdtps~IYVWiGk~ss~~e 328 (809)
...+.|+++++|+|+++.+||+|+|+.|+...
T Consensus 738 aT~s~le~~GlYLidtg~~iflw~g~d~~p~L 769 (861)
T COG5028 738 ATSSLLESGGLYLIDTGQKIFLWFGKDAVPSL 769 (861)
T ss_pred hhHHHHhcCCeEEEEcCCEEEEEecCCCCHHH
Confidence 34578899999999999999999999999743
No 58
>KOG4228 consensus Protein tyrosine phosphatase [Signal transduction mechanisms]
Probab=86.60 E-value=0.87 Score=57.23 Aligned_cols=56 Identities=18% Similarity=0.380 Sum_probs=37.5
Q ss_pred HHHHHHHHHHhc----CCEEEEEcCCCCchHHHHHHH-----HHHhhcCCCHHHHHHHHHHHcCc
Q 003581 189 DVFDYFEDVREQ----GGRVFVHCCQGVSRSTSLVIA-----YLMWREGQSFEDAFQYVKAARGV 244 (809)
Q Consensus 189 eav~fIe~a~~k----GgrVLVHC~aGvSRS~tVVIA-----YLM~~~gmSleeAl~~VRs~RP~ 244 (809)
..+.|+.+.+.- .|+++|||.+|+||+|+.++- .++.....+...-+..+|..|..
T Consensus 714 ~lL~f~rrvk~~~p~~aGPiVVHCSAGvGRTG~fi~iDaml~~~~~e~~vdiy~~v~~lR~QR~~ 778 (1087)
T KOG4228|consen 714 GLLKFRRRVKTFNPPDAGPIVVHCSAGVGRTGCFIVIDAMLDRLECEGKVDIYGHVKTLRRQRNN 778 (1087)
T ss_pred HHHHHHHHhccCCCcCCCCEEEECCCCCCCcceEEEeHHHHHHHHhhCccceechhHHHHhcccc
Confidence 456677776653 399999999999999986432 22223344555666666666664
No 59
>smart00262 GEL Gelsolin homology domain. Gelsolin/severin/villin homology domain. Calcium-binding and actin-binding. Both intra- and extracellular domains.
Probab=85.27 E-value=0.74 Score=40.97 Aligned_cols=28 Identities=29% Similarity=0.296 Sum_probs=24.2
Q ss_pred cccccccCCceEEEEEccCCCCCCcceEEEEecCc
Q 003581 722 SSSFQVLDSRSVYILLAPDTSLGQMSRVFCMSGWG 756 (809)
Q Consensus 722 ~~~~~~lds~sv~i~~~p~~~~~~~~~lyiwvG~~ 756 (809)
.+..++|||+.+||+-.+ ..||+|+|+.
T Consensus 17 ~~~~~~L~s~d~fild~~-------~~iyvW~G~~ 44 (90)
T smart00262 17 PFSQGSLNSGDCYILDTG-------SEIYVWVGKK 44 (90)
T ss_pred CCCHHHCCCCCEEEEECC-------CEEEEEECCC
Confidence 467799999999999875 3699999996
No 60
>PTZ00395 Sec24-related protein; Provisional
Probab=83.78 E-value=3.8 Score=52.94 Aligned_cols=35 Identities=11% Similarity=0.237 Sum_probs=30.0
Q ss_pred cCCCcccCCCCCCeEEEecCCceEEEecCCCChhh
Q 003581 294 LNYPVAQGFDTRGAFIVLVPSAIYVWIGKNCSVMM 328 (809)
Q Consensus 294 eV~~s~sSLNSrDvFILdtps~IYVWiGk~ss~~e 328 (809)
.+..+...|.++++|||+.+..+|+|+|+.++...
T Consensus 1433 ~LrLS~ErLesdGIYLLDNGe~IyLWVG~~V~PqL 1467 (1560)
T PTZ00395 1433 TIPSSAEKIYSNGIYLLDACTHFYLYFGFHSDANF 1467 (1560)
T ss_pred cccchHHHhcCCcEEEEECCCEEEEEECCCCCHHH
Confidence 34566788999999999999999999999998643
No 61
>KOG4471 consensus Phosphatidylinositol 3-phosphate 3-phosphatase myotubularin MTM1 [Lipid transport and metabolism; Intracellular trafficking, secretion, and vesicular transport]
Probab=82.54 E-value=2.1 Score=50.82 Aligned_cols=39 Identities=31% Similarity=0.510 Sum_probs=29.1
Q ss_pred HHHHHHHHHHHHhcCCEEEEEcCCCCchHHHHHH-HHHHh
Q 003581 187 LYDVFDYFEDVREQGGRVFVHCCQGVSRSTSLVI-AYLMW 225 (809)
Q Consensus 187 L~eav~fIe~a~~kGgrVLVHC~aGvSRS~tVVI-AYLM~ 225 (809)
|.-|+...++....+..|||||..|-.|++.+++ |-||.
T Consensus 360 Laga~~Ia~kVe~~~~sVlVHCSDGWDRT~QlvsLA~LlL 399 (717)
T KOG4471|consen 360 LAGAVRIADKVESESRSVLVHCSDGWDRTAQLVSLAMLLL 399 (717)
T ss_pred HHHHHHHHHHHhcCCceEEEEcCCCccchHHHHHHHHHHh
Confidence 4455555566666789999999999999998765 44553
No 62
>KOG1985 consensus Vesicle coat complex COPII, subunit SEC24/subunit SFB2 [Intracellular trafficking, secretion, and vesicular transport]
Probab=77.69 E-value=4.8 Score=49.52 Aligned_cols=30 Identities=20% Similarity=0.584 Sum_probs=27.4
Q ss_pred CcccCCCCCCeEEEecCCceEEEecCCCCh
Q 003581 297 PVAQGFDTRGAFIVLVPSAIYVWIGKNCSV 326 (809)
Q Consensus 297 ~s~sSLNSrDvFILdtps~IYVWiGk~ss~ 326 (809)
..+..|.+++.|++|++..+|+|+|+.|..
T Consensus 765 ltae~l~~~GlyL~D~g~~lfl~vg~~a~P 794 (887)
T KOG1985|consen 765 LTAELLSRRGLYLMDTGTTLFLWVGSNADP 794 (887)
T ss_pred hHHHHhccCceEEEecCcEEEEEEcCCCCc
Confidence 456788999999999999999999999986
No 63
>KOG4228 consensus Protein tyrosine phosphatase [Signal transduction mechanisms]
Probab=70.74 E-value=4.1 Score=51.60 Aligned_cols=45 Identities=18% Similarity=0.330 Sum_probs=34.3
Q ss_pred CCEEEEEcCCCCchHHHHHHHHHHhh-----cCCCHHHHHHHHHHHcCcc
Q 003581 201 GGRVFVHCCQGVSRSTSLVIAYLMWR-----EGQSFEDAFQYVKAARGVT 245 (809)
Q Consensus 201 GgrVLVHC~aGvSRS~tVVIAYLM~~-----~gmSleeAl~~VRs~RP~I 245 (809)
.+++.|||..|.+|+++.+++-+... +-++.=+|.+-+|..||.+
T Consensus 1018 ~~P~~Vhc~nG~~rsg~f~ai~~l~e~~~~e~~vDVfq~vk~Lr~~rp~m 1067 (1087)
T KOG4228|consen 1018 DGPIIVHCLNGVGRTGTFCAISILLERMRKEGVVDVFQTVKTLRFQRPGM 1067 (1087)
T ss_pred CCCEEEEEcCCCcceeehHHHHHHHHHHhhcCceeeehhhhhhhhcCccc
Confidence 68999999999999999887765443 1345556777777777765
No 64
>PF06602 Myotub-related: Myotubularin-like phosphatase domain; InterPro: IPR010569 This family represents a region within eukaryotic myotubularin-related proteins that is sometimes found with IPR004182 from INTERPRO. Myotubularin is a dual-specific lipid phosphatase that dephosphorylates phosphatidylinositol 3-phosphate and phosphatidylinositol (3,5)-bi-phosphate []. Mutations in gene encoding myotubularin-related proteins have been associated with disease [].; GO: 0016791 phosphatase activity, 0016311 dephosphorylation; PDB: 1M7R_B 1LW3_A 1ZVR_A 1ZSQ_A 2YF0_A.
Probab=69.47 E-value=9.7 Score=43.05 Aligned_cols=23 Identities=35% Similarity=0.764 Sum_probs=17.5
Q ss_pred HhcCCEEEEEcCCCCchHHHHHH
Q 003581 198 REQGGRVFVHCCQGVSRSTSLVI 220 (809)
Q Consensus 198 ~~kGgrVLVHC~aGvSRS~tVVI 220 (809)
..+|..|||||..|..|++.++.
T Consensus 228 ~~~~~~Vlvh~~dGwDrt~q~~s 250 (353)
T PF06602_consen 228 HDEGSSVLVHCSDGWDRTSQLSS 250 (353)
T ss_dssp HTT--EEEEECTTSSSHHHHHHH
T ss_pred hccCceEEEEcCCCCcccHHHHH
Confidence 36889999999999999966544
No 65
>cd01518 RHOD_YceA Member of the Rhodanese Homology Domain superfamily. This CD includes Escherichia coli YceA, Bacillus subtilis YbfQ, and similar uncharacterized proteins.
Probab=65.63 E-value=17 Score=32.60 Aligned_cols=28 Identities=32% Similarity=0.522 Sum_probs=18.9
Q ss_pred hcCCEEEEEcCCCCchHHHHHHHHHHhhcCC
Q 003581 199 EQGGRVFVHCCQGVSRSTSLVIAYLMWREGQ 229 (809)
Q Consensus 199 ~kGgrVLVHC~aGvSRS~tVVIAYLM~~~gm 229 (809)
.++++|+|+|..| .||... +.+| ...|.
T Consensus 59 ~~~~~ivvyC~~G-~rs~~a-~~~L-~~~G~ 86 (101)
T cd01518 59 LKGKKVLMYCTGG-IRCEKA-SAYL-KERGF 86 (101)
T ss_pred cCCCEEEEECCCc-hhHHHH-HHHH-HHhCC
Confidence 4678999999988 488643 3344 44454
No 66
>KOG1089 consensus Myotubularin-related phosphatidylinositol 3-phosphate 3-phosphatase MTM6 [General function prediction only]
Probab=61.64 E-value=12 Score=44.84 Aligned_cols=33 Identities=24% Similarity=0.454 Sum_probs=24.1
Q ss_pred HHHHHHh-cCCEEEEEcCCCCchHHHHHHHH-HHh
Q 003581 193 YFEDVRE-QGGRVFVHCCQGVSRSTSLVIAY-LMW 225 (809)
Q Consensus 193 fIe~a~~-kGgrVLVHC~aGvSRS~tVVIAY-LM~ 225 (809)
+|.+++. +|-.|||||..|..|+..|+... ||.
T Consensus 335 ~ia~~l~~~~~sVlvhcsdGwDrT~qV~SLaQllL 369 (573)
T KOG1089|consen 335 EIAKCLSSEGASVLVHCSDGWDRTCQVSSLAQLLL 369 (573)
T ss_pred HHHHHHHhCCCeEEEEccCCcchhHHHHHHHHHHh
Confidence 4555555 66999999999999997765433 443
No 67
>COG0607 PspE Rhodanese-related sulfurtransferase [Inorganic ion transport and metabolism]
Probab=54.21 E-value=27 Score=31.22 Aligned_cols=69 Identities=20% Similarity=0.168 Sum_probs=38.7
Q ss_pred HHHHCCCcEEEEcccCCCCCccC-CCcE-EEEEEccCCCCCchHHHHHHHHHHHHHHHhcCCEEEEEcCCCCchHHHHHH
Q 003581 143 ILRQNGITHVLNCVGFVCPEYFK-GDLV-YKTLWLQDSPSEDITSILYDVFDYFEDVREQGGRVFVHCCQGVSRSTSLVI 220 (809)
Q Consensus 143 ~Lk~lGIT~VINL~~e~~p~~~~-~~i~-yl~IpI~D~~~edL~~~L~eav~fIe~a~~kGgrVLVHC~aGvSRS~tVVI 220 (809)
.+...+-..||++... .++.. .-.. ..++|+.+....... .. ..+++.++|+|..|. || ..++
T Consensus 14 ~~~~~~~~~liDvR~~--~e~~~~~i~~~~~~ip~~~~~~~~~~---------~~--~~~~~~ivv~C~~G~-rS-~~aa 78 (110)
T COG0607 14 LLLAGEDAVLLDVREP--EEYERGHIPGAAINIPLSELKAAENL---------LE--LPDDDPIVVYCASGV-RS-AAAA 78 (110)
T ss_pred HhhccCCCEEEeccCh--hHhhhcCCCcceeeeecccchhhhcc---------cc--cCCCCeEEEEeCCCC-Ch-HHHH
Confidence 3444456778887543 22222 1123 567777655432110 00 567899999999998 77 4445
Q ss_pred HHHHhh
Q 003581 221 AYLMWR 226 (809)
Q Consensus 221 AYLM~~ 226 (809)
.+|...
T Consensus 79 ~~L~~~ 84 (110)
T COG0607 79 AALKLA 84 (110)
T ss_pred HHHHHc
Confidence 555544
No 68
>PLN00162 transport protein sec23; Provisional
Probab=51.82 E-value=42 Score=41.83 Aligned_cols=70 Identities=7% Similarity=0.038 Sum_probs=45.7
Q ss_pred CCCcccCCCCCCeEEEecCCceEEEecCCCC-----------hhh-----hHHHHHHHHHHHHHhhcCCcEEEccCCCCh
Q 003581 295 NYPVAQGFDTRGAFIVLVPSAIYVWIGKNCS-----------VMM-----SNRAREAANQVIRYEKAQGQITSIKEGEEP 358 (809)
Q Consensus 295 V~~s~sSLNSrDvFILdtps~IYVWiGk~ss-----------~~e-----r~~A~~aA~qI~~~e~~~~~I~vV~EG~Ep 358 (809)
+.....+|.++.+|+||++..|+||+|.... ..+ .+..+.-|+.|.+.--+...++++++|.-.
T Consensus 635 v~Ld~~si~~d~ilLLD~~f~vvi~~G~~ia~w~~~~~~~~~~~~~~~~~l~~p~~~a~~~~~~Rfp~Pr~i~~~~~~Sq 714 (761)
T PLN00162 635 VLLDVASIAADRILLLDSYFSVVIFHGSTIAQWRKAGYHNQPEHEAFAQLLEAPQADAQAIIKERFPVPRLVVCDQHGSQ 714 (761)
T ss_pred eecchhhccCCceEEEeCCCEEEEEecCcccchhhcCCCCCcchhhHHHHHHhHHHHHHHHHhcCCCCCeEEEeCCCCcH
Confidence 3456788999999999999999999994221 111 112223344454433444568889998887
Q ss_pred hHHHHH
Q 003581 359 LEFWDA 364 (809)
Q Consensus 359 ~eFW~a 364 (809)
.-|.-+
T Consensus 715 aRfl~~ 720 (761)
T PLN00162 715 ARFLLA 720 (761)
T ss_pred HHHHHH
Confidence 777554
No 69
>PLN02160 thiosulfate sulfurtransferase
Probab=44.79 E-value=31 Score=33.56 Aligned_cols=30 Identities=20% Similarity=0.294 Sum_probs=20.0
Q ss_pred HhcCCEEEEEcCCCCchHHHHHHHHHHhhcCCC
Q 003581 198 REQGGRVFVHCCQGVSRSTSLVIAYLMWREGQS 230 (809)
Q Consensus 198 ~~kGgrVLVHC~aGvSRS~tVVIAYLM~~~gmS 230 (809)
+..+++|+|||..|. ||...+ .++...|.+
T Consensus 78 ~~~~~~IivyC~sG~-RS~~Aa--~~L~~~G~~ 107 (136)
T PLN02160 78 LNPADDILVGCQSGA-RSLKAT--TELVAAGYK 107 (136)
T ss_pred cCCCCcEEEECCCcH-HHHHHH--HHHHHcCCC
Confidence 356789999999994 886543 333444543
No 70
>cd01533 4RHOD_Repeat_2 Member of the Rhodanese Homology Domain superfamily, repeat 2. This CD includes putative rhodanese-related sulfurtransferases which contain 4 copies of the Rhodanese Homology Domain. This CD aligns the 2nd repeat which does contain the putative catalytic Cys residue.
Probab=42.77 E-value=45 Score=30.41 Aligned_cols=27 Identities=22% Similarity=0.254 Sum_probs=17.9
Q ss_pred cCCEEEEEcCCCCchHHHHHHHHHHhhcCC
Q 003581 200 QGGRVFVHCCQGVSRSTSLVIAYLMWREGQ 229 (809)
Q Consensus 200 kGgrVLVHC~aGvSRS~tVVIAYLM~~~gm 229 (809)
++.+|+|||..|. ||.. ++..| +..|.
T Consensus 65 ~~~~ivv~C~~G~-rs~~-a~~~L-~~~G~ 91 (109)
T cd01533 65 PRTPIVVNCAGRT-RSII-GAQSL-INAGL 91 (109)
T ss_pred CCCeEEEECCCCc-hHHH-HHHHH-HHCCC
Confidence 4679999999997 7733 33333 44455
No 71
>PRK01415 hypothetical protein; Validated
Probab=39.49 E-value=54 Score=35.58 Aligned_cols=25 Identities=20% Similarity=0.398 Sum_probs=18.2
Q ss_pred HhcCCEEEEEcCCCCchHHHHHHHHHH
Q 003581 198 REQGGRVFVHCCQGVSRSTSLVIAYLM 224 (809)
Q Consensus 198 ~~kGgrVLVHC~aGvSRS~tVVIAYLM 224 (809)
..++++|+++|+.|+ || ..++++|.
T Consensus 168 ~~k~k~Iv~yCtgGi-Rs-~kAa~~L~ 192 (247)
T PRK01415 168 LLKGKKIAMVCTGGI-RC-EKSTSLLK 192 (247)
T ss_pred hcCCCeEEEECCCCh-HH-HHHHHHHH
Confidence 357789999999996 77 44455554
No 72
>PF00581 Rhodanese: Rhodanese-like domain This Prosite entry represents a subset of this family.; InterPro: IPR001763 Rhodanese, a sulphurtransferase involved in cyanide detoxification (see IPR001307 from INTERPRO) shares evolutionary relationship with a large family of proteins [], including Cdc25 phosphatase catalytic domain. non-catalytic domains of eukaryotic dual-specificity MAPK-phosphatases. non-catalytic domains of yeast PTP-type MAPK-phosphatases. non-catalytic domains of yeast Ubp4, Ubp5, Ubp7. non-catalytic domains of mammalian Ubp-Y. Drosophila heat shock protein HSP-67BB. several bacterial cold-shock and phage shock proteins. plant senescence associated proteins. catalytic and non-catalytic domains of rhodanese (see IPR001307 from INTERPRO). Rhodanese has an internal duplication. This domain is found as a single copy in other proteins, including phosphatases and ubiquitin C-terminal hydrolases [].; PDB: 2J6P_D 2FSX_A 1UAR_A 1OKG_A 1GMX_A 1GN0_A 3NTD_B 3NTA_B 3NT6_A 1C25_A ....
Probab=38.21 E-value=1.1e+02 Score=27.08 Aligned_cols=82 Identities=15% Similarity=0.182 Sum_probs=42.0
Q ss_pred HCCCcEEEEcccCCCCCccCCCc-EEEEEEccCC---CCCchHHHHHHHHHHHHHHHhcCCEEEEEcCCCCchHHHHHH-
Q 003581 146 QNGITHVLNCVGFVCPEYFKGDL-VYKTLWLQDS---PSEDITSILYDVFDYFEDVREQGGRVFVHCCQGVSRSTSLVI- 220 (809)
Q Consensus 146 ~lGIT~VINL~~e~~p~~~~~~i-~yl~IpI~D~---~~edL~~~L~eav~fIe~a~~kGgrVLVHC~aGvSRS~tVVI- 220 (809)
..+=..||+|.... ++....+ .-.++|+... ........+............++..|+|+|..|. |+...+.
T Consensus 10 ~~~~~~liD~R~~~--~~~~~hI~ga~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iv~yc~~~~-~~~~~~~~ 86 (113)
T PF00581_consen 10 ENESVLLIDVRSPE--EYERGHIPGAVNIPFPSLDPDEPSLSEDKLDEFLKELGKKIDKDKDIVFYCSSGW-RSGSAAAA 86 (113)
T ss_dssp TTTTEEEEEESSHH--HHHHSBETTEEEEEGGGGSSSSSBCHHHHHHHHHHHHTHGSTTTSEEEEEESSSC-HHHHHHHH
T ss_pred hCCCeEEEEeCCHH--HHHcCCCCCCccccccccccccccccccccccccccccccccccccceeeeeccc-ccchhHHH
Confidence 44556788875321 1211222 2367777432 2222334444444444444567789999996666 4444333
Q ss_pred --HHHHhhcCCC
Q 003581 221 --AYLMWREGQS 230 (809)
Q Consensus 221 --AYLM~~~gmS 230 (809)
+|++...|++
T Consensus 87 ~~~~~l~~~g~~ 98 (113)
T PF00581_consen 87 RVAWILKKLGFK 98 (113)
T ss_dssp HHHHHHHHTTTS
T ss_pred HHHHHHHHcCCC
Confidence 3434444543
No 73
>smart00400 ZnF_CHCC zinc finger.
Probab=37.09 E-value=31 Score=28.46 Aligned_cols=32 Identities=31% Similarity=0.554 Sum_probs=24.4
Q ss_pred EEEcCCCCchHHHHHHHHHHhhcCCCHHHHHHHH
Q 003581 205 FVHCCQGVSRSTSLVIAYLMWREGQSFEDAFQYV 238 (809)
Q Consensus 205 LVHC~aGvSRS~tVVIAYLM~~~gmSleeAl~~V 238 (809)
..||.+ -++.+- +|.++|+.+|+++.||++.+
T Consensus 23 ~~~Cf~-cg~gGd-~i~fv~~~~~~sf~eA~~~L 54 (55)
T smart00400 23 FFHCFG-CGAGGN-VISFLMKYDKLSFVEAVKKL 54 (55)
T ss_pred EEEEeC-CCCCCC-HHHHHHHHHCcCHHHHHHHh
Confidence 478874 345554 48888999999999999875
No 74
>cd01448 TST_Repeat_1 Thiosulfate sulfurtransferase (TST), N-terminal, inactive domain. TST contains 2 copies of the Rhodanese Homology Domain; this is the 1st repeat, which does not contain the catalytically active Cys residue. The role of the 1st repeat is uncertain, but it is believed to be involved in protein interaction.
Probab=34.15 E-value=57 Score=30.20 Aligned_cols=31 Identities=16% Similarity=-0.065 Sum_probs=20.3
Q ss_pred HhcCCEEEEEcCCCCchHHHHHHHHHHhhcCCC
Q 003581 198 REQGGRVFVHCCQGVSRSTSLVIAYLMWREGQS 230 (809)
Q Consensus 198 ~~kGgrVLVHC~aGvSRS~tVVIAYLM~~~gmS 230 (809)
+.++.+|+|+|..| ++.++.++.+|. ..|+.
T Consensus 76 ~~~~~~vv~~c~~g-~~~a~~~~~~l~-~~G~~ 106 (122)
T cd01448 76 ISNDDTVVVYDDGG-GFFAARAWWTLR-YFGHE 106 (122)
T ss_pred CCCCCEEEEECCCC-CccHHHHHHHHH-HcCCC
Confidence 34678999999998 555555554443 44543
No 75
>PF03668 ATP_bind_2: P-loop ATPase protein family; InterPro: IPR005337 This entry represents UPF0042 nucleotide-binding proteins. This is a family of putative P-loop ATPases [], as they contain an ATP-binding site and display ATPase and GTPase activities.; GO: 0005524 ATP binding
Probab=33.59 E-value=50 Score=36.63 Aligned_cols=19 Identities=21% Similarity=0.436 Sum_probs=16.2
Q ss_pred EEEEEcCCCCchHHHHHHH
Q 003581 203 RVFVHCCQGVSRSTSLVIA 221 (809)
Q Consensus 203 rVLVHC~aGvSRS~tVVIA 221 (809)
.|-|=|++|..||++++=+
T Consensus 244 tIaiGCTGG~HRSV~iae~ 262 (284)
T PF03668_consen 244 TIAIGCTGGQHRSVAIAER 262 (284)
T ss_pred EEEEEcCCCcCcHHHHHHH
Confidence 6889999999999988643
No 76
>cd01528 RHOD_2 Member of the Rhodanese Homology Domain superfamily, subgroup 2. Subgroup 2 includes uncharacterized putative rhodanese-related domains.
Probab=31.83 E-value=92 Score=27.91 Aligned_cols=28 Identities=29% Similarity=0.557 Sum_probs=18.2
Q ss_pred cCCEEEEEcCCCCchHHHHHHHHHHhhcCCC
Q 003581 200 QGGRVFVHCCQGVSRSTSLVIAYLMWREGQS 230 (809)
Q Consensus 200 kGgrVLVHC~aGvSRS~tVVIAYLM~~~gmS 230 (809)
++.+|+|+|..|. ||... +.+|. ..|.+
T Consensus 57 ~~~~vv~~c~~g~-rs~~~-~~~l~-~~G~~ 84 (101)
T cd01528 57 PDKDIVVLCHHGG-RSMQV-AQWLL-RQGFE 84 (101)
T ss_pred CCCeEEEEeCCCc-hHHHH-HHHHH-HcCCc
Confidence 5789999999984 77444 33343 34543
No 77
>PRK10886 DnaA initiator-associating protein DiaA; Provisional
Probab=29.28 E-value=1.1e+02 Score=32.06 Aligned_cols=37 Identities=8% Similarity=0.122 Sum_probs=29.6
Q ss_pred hHHHHHHHHHHHHHHHhcCCEEEEEcCCCCchHHHHHHHH
Q 003581 183 ITSILYDVFDYFEDVREQGGRVFVHCCQGVSRSTSLVIAY 222 (809)
Q Consensus 183 L~~~L~eav~fIe~a~~kGgrVLVHC~aGvSRS~tVVIAY 222 (809)
+.+.+.++++.|.+++.++++|+|. |.|+|++++..+
T Consensus 23 ~~~~i~~a~~~l~~~l~~~~rI~~~---G~GgSa~~A~~~ 59 (196)
T PRK10886 23 LPDAISRAAMTLVQSLLNGNKILCC---GNGTSAANAQHF 59 (196)
T ss_pred hHHHHHHHHHHHHHHHHcCCEEEEE---ECcHHHHHHHHH
Confidence 3456888888999999999999987 888887765544
No 78
>PF03861 ANTAR: ANTAR domain; InterPro: IPR005561 ANTAR (AmiR and NasR transcription antitermination regulators) is an RNA-binding domain found in bacterial transcription antitermination regulatory proteins []. This domain has been detected in various response regulators of two-component systems, which are structured around two proteins, a histidine kinase and a response regulator. This domain is also found in one-component sensory regulators from a variety of bacteria. Most response regulators interact with DNA, however ANTAR-containing regulators interact with RNA. The majority of the domain consists of a coiled-coil.; PDB: 4AKK_A 1SD5_A 1S8N_A 1QO0_E.
Probab=28.19 E-value=82 Score=26.13 Aligned_cols=26 Identities=23% Similarity=0.308 Sum_probs=20.6
Q ss_pred HHHHHHHHHhhcCCCHHHHHHHHHHH
Q 003581 216 TSLVIAYLMWREGQSFEDAFQYVKAA 241 (809)
Q Consensus 216 ~tVVIAYLM~~~gmSleeAl~~VRs~ 241 (809)
..-+.+.||..+|++.++|+.+++..
T Consensus 15 I~~AkgiLm~~~g~~e~~A~~~Lr~~ 40 (56)
T PF03861_consen 15 IEQAKGILMARYGLSEDEAYRLLRRQ 40 (56)
T ss_dssp HHHHHHHHHHHHT--HHHHHHHHHHH
T ss_pred HHHHHHHHHHHhCcCHHHHHHHHHHH
Confidence 45577889999999999999999875
No 79
>cd01523 RHOD_Lact_B Member of the Rhodanese Homology Domain superfamily. This CD includes predicted proteins with rhodanese-like domains found N-terminal of the metallo-beta-lactamase domain.
Probab=28.18 E-value=60 Score=28.98 Aligned_cols=28 Identities=25% Similarity=0.235 Sum_probs=18.4
Q ss_pred hcCCEEEEEcCCCCchHHHHHHHHHHhhcCC
Q 003581 199 EQGGRVFVHCCQGVSRSTSLVIAYLMWREGQ 229 (809)
Q Consensus 199 ~kGgrVLVHC~aGvSRS~tVVIAYLM~~~gm 229 (809)
.++++|+|||..|. ||.. ++..| ...|.
T Consensus 59 ~~~~~ivv~C~~G~-rs~~-aa~~L-~~~G~ 86 (100)
T cd01523 59 PDDQEVTVICAKEG-SSQF-VAELL-AERGY 86 (100)
T ss_pred CCCCeEEEEcCCCC-cHHH-HHHHH-HHcCc
Confidence 46789999999995 7743 33333 34454
No 80
>PF01807 zf-CHC2: CHC2 zinc finger; InterPro: IPR002694 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule. Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. This entry represents CycHisCysCys (CHC2) type zinc finger domains, which are found in bacteria and viruses. More information about these proteins can be found at Protein of the Month: Zinc Fingers [].; GO: 0003677 DNA binding, 0003896 DNA primase activity, 0008270 zinc ion binding, 0006260 DNA replication; PDB: 1D0Q_B 2AU3_A.
Probab=28.17 E-value=55 Score=30.21 Aligned_cols=37 Identities=27% Similarity=0.513 Sum_probs=25.7
Q ss_pred EEEcCCCCchHHHHHHHHHHhhcCCCHHHHHHHHHHHcC
Q 003581 205 FVHCCQGVSRSTSLVIAYLMWREGQSFEDAFQYVKAARG 243 (809)
Q Consensus 205 LVHC~aGvSRS~tVVIAYLM~~~gmSleeAl~~VRs~RP 243 (809)
+-||.+ -+..+- ++.++|..+++++.+|++++.+.-.
T Consensus 54 ~~~Cf~-Cg~~Gd-~i~~v~~~~~~~f~eAv~~l~~~~~ 90 (97)
T PF01807_consen 54 RFKCFG-CGKGGD-VIDFVMKYEGCSFKEAVKWLAEEFG 90 (97)
T ss_dssp EEEETT-T--EE--HHHHHHHHHT--HHHHHHHHHHHHT
T ss_pred eEEECC-CCCCCc-HHhHHHHHhCCCHHHHHHHHHHHhC
Confidence 688984 566664 4888899999999999999977543
No 81
>PRK05416 glmZ(sRNA)-inactivating NTPase; Provisional
Probab=28.12 E-value=59 Score=35.88 Aligned_cols=37 Identities=22% Similarity=0.351 Sum_probs=24.1
Q ss_pred HHHHHHHHHHHHH----HhcCC---EEEEEcCCCCchHHHHHHH
Q 003581 185 SILYDVFDYFEDV----REQGG---RVFVHCCQGVSRSTSLVIA 221 (809)
Q Consensus 185 ~~L~eav~fIe~a----~~kGg---rVLVHC~aGvSRS~tVVIA 221 (809)
..++.+.++++.+ .++|+ .|-|=|++|..||++++-.
T Consensus 222 ~~~~~~~~~~~~~~~~~~~~g~~~~~i~igCtGG~HRSV~~~e~ 265 (288)
T PRK05416 222 EFLDKIRDLLEFWLPGYEREGKSYLTIAIGCTGGQHRSVAIAER 265 (288)
T ss_pred HHHHHHHHHHHHHHHHHHHcCCCEEEEEEecCCCcccHHHHHHH
Confidence 3445555555543 33443 4788999999999988543
No 82
>TIGR03865 PQQ_CXXCW PQQ-dependent catabolism-associated CXXCW motif protein. Members of this protein family have a CXXXCW motif, consistent with a possible role in redox cofactor binding. This protein family shows strong relationships by phylogenetic profiling and conserved gene neighborhoods with a transport system for alcohols metabolized by PQQ-dependent enzymes.
Probab=27.69 E-value=66 Score=32.29 Aligned_cols=30 Identities=17% Similarity=0.073 Sum_probs=21.5
Q ss_pred hcCCEEEEEcCCCCchHHHHHHHHHHhhcCCC
Q 003581 199 EQGGRVFVHCCQGVSRSTSLVIAYLMWREGQS 230 (809)
Q Consensus 199 ~kGgrVLVHC~aGvSRS~tVVIAYLM~~~gmS 230 (809)
.++.+|+|+|..|..||.. ++++++..|.+
T Consensus 114 ~~d~~IVvYC~~G~~~S~~--aa~~L~~~G~~ 143 (162)
T TIGR03865 114 DKDRPLVFYCLADCWMSWN--AAKRALAYGYS 143 (162)
T ss_pred CCCCEEEEEECCCCHHHHH--HHHHHHhcCCc
Confidence 4678999999998878875 45555555543
No 83
>cd01520 RHOD_YbbB Member of the Rhodanese Homology Domain superfamily. This CD includes several putative ATP /GTP binding proteins including E. coli YbbB.
Probab=26.94 E-value=1e+02 Score=29.20 Aligned_cols=30 Identities=33% Similarity=0.534 Sum_probs=20.6
Q ss_pred HhcCCEEEEEcCCCCchHHHHHHHHHHhhcCC
Q 003581 198 REQGGRVFVHCCQGVSRSTSLVIAYLMWREGQ 229 (809)
Q Consensus 198 ~~kGgrVLVHC~aGvSRS~tVVIAYLM~~~gm 229 (809)
+.++.+|+|+|..|-.||..+ ++++...|.
T Consensus 83 i~~~~~vvvyC~~~G~rs~~a--~~~L~~~G~ 112 (128)
T cd01520 83 LERDPKLLIYCARGGMRSQSL--AWLLESLGI 112 (128)
T ss_pred cCCCCeEEEEeCCCCccHHHH--HHHHHHcCC
Confidence 456789999998554577643 366666565
No 84
>cd01522 RHOD_1 Member of the Rhodanese Homology Domain superfamily, subgroup 1. This CD includes the putative rhodanese-related sulfurtransferases of several uncharacterized proteins.
Probab=26.24 E-value=92 Score=29.11 Aligned_cols=20 Identities=25% Similarity=0.373 Sum_probs=15.5
Q ss_pred HhcCCEEEEEcCCCCchHHHH
Q 003581 198 REQGGRVFVHCCQGVSRSTSL 218 (809)
Q Consensus 198 ~~kGgrVLVHC~aGvSRS~tV 218 (809)
.....+|+|+|..|. ||..+
T Consensus 61 ~~~~~~ivv~C~~G~-rs~~a 80 (117)
T cd01522 61 VGKDRPVLLLCRSGN-RSIAA 80 (117)
T ss_pred CCCCCeEEEEcCCCc-cHHHH
Confidence 356789999999985 77654
No 85
>PRK05728 DNA polymerase III subunit chi; Validated
Probab=26.24 E-value=81 Score=31.14 Aligned_cols=26 Identities=23% Similarity=0.324 Sum_probs=22.4
Q ss_pred HHHHHHHHHHHHHHhcCCEEEEEcCC
Q 003581 185 SILYDVFDYFEDVREQGGRVFVHCCQ 210 (809)
Q Consensus 185 ~~L~eav~fIe~a~~kGgrVLVHC~a 210 (809)
..+.-++.+++++.++|.+|+|+|..
T Consensus 13 ~~~~~~c~L~~ka~~~g~rv~I~~~d 38 (142)
T PRK05728 13 ALEALLCELAEKALRAGWRVLVQCED 38 (142)
T ss_pred hHHHHHHHHHHHHHHCCCEEEEEcCC
Confidence 35667899999999999999999954
No 86
>PRK05320 rhodanese superfamily protein; Provisional
Probab=26.03 E-value=1.1e+02 Score=33.29 Aligned_cols=24 Identities=21% Similarity=0.360 Sum_probs=17.8
Q ss_pred cCCEEEEEcCCCCchHHHHHHHHHHh
Q 003581 200 QGGRVFVHCCQGVSRSTSLVIAYLMW 225 (809)
Q Consensus 200 kGgrVLVHC~aGvSRS~tVVIAYLM~ 225 (809)
++++|+++|..|+ ||.. ++++|..
T Consensus 174 kdk~IvvyC~~G~-Rs~~-Aa~~L~~ 197 (257)
T PRK05320 174 AGKTVVSFCTGGI-RCEK-AAIHMQE 197 (257)
T ss_pred CCCeEEEECCCCH-HHHH-HHHHHHH
Confidence 5789999999996 7744 4566643
No 87
>PRK00142 putative rhodanese-related sulfurtransferase; Provisional
Probab=25.67 E-value=1e+02 Score=34.42 Aligned_cols=27 Identities=26% Similarity=0.512 Sum_probs=19.3
Q ss_pred cCCEEEEEcCCCCchHHHHHHHHHHhhcCC
Q 003581 200 QGGRVFVHCCQGVSRSTSLVIAYLMWREGQ 229 (809)
Q Consensus 200 kGgrVLVHC~aGvSRS~tVVIAYLM~~~gm 229 (809)
++++|+|||..|+ ||. .+++||.. .|.
T Consensus 170 kdk~IvvyC~~G~-Rs~-~aa~~L~~-~Gf 196 (314)
T PRK00142 170 KDKKVVMYCTGGI-RCE-KASAWMKH-EGF 196 (314)
T ss_pred CcCeEEEECCCCc-HHH-HHHHHHHH-cCC
Confidence 6789999999997 874 44556554 454
No 88
>PRK14116 gpmA phosphoglyceromutase; Provisional
Probab=24.93 E-value=1.6e+02 Score=31.00 Aligned_cols=51 Identities=24% Similarity=0.345 Sum_probs=35.4
Q ss_pred CCCchHHHHHHHHHHHHHHHh----cCCEEEEEcCCCCchHHHHHHHHHHhhcCCCHHHHH
Q 003581 179 PSEDITSILYDVFDYFEDVRE----QGGRVFVHCCQGVSRSTSLVIAYLMWREGQSFEDAF 235 (809)
Q Consensus 179 ~~edL~~~L~eav~fIe~a~~----kGgrVLVHC~aGvSRS~tVVIAYLM~~~gmSleeAl 235 (809)
..+++......+..++++.+. .+++|||-|++|+-|. +++|++ |+++++..
T Consensus 148 gGEs~~~~~~Rv~~~l~~~i~~~~~~~~~vlvVsHg~vir~---ll~~~~---~~~~~~~~ 202 (228)
T PRK14116 148 GGENLKVTLERVIPFWEDHIAPDLLDGKNVIIAAHGNSLRA---LTKYIE---NISDEDIM 202 (228)
T ss_pred CCCCHHHHHHHHHHHHHHHHHHhhcCCCeEEEEcChHHHHH---HHHHHh---CCCHHHHH
Confidence 346677777888888877542 4689999999999775 333433 67766543
No 89
>KOG0235 consensus Phosphoglycerate mutase [Carbohydrate transport and metabolism]
Probab=23.58 E-value=2.4e+02 Score=30.20 Aligned_cols=52 Identities=17% Similarity=0.234 Sum_probs=35.6
Q ss_pred CCCchHHHHHHHHHHHHHHH----hcCCEEEEEcCCCCchHHHHHHHHHHhhcCCCHHHHHH
Q 003581 179 PSEDITSILYDVFDYFEDVR----EQGGRVFVHCCQGVSRSTSLVIAYLMWREGQSFEDAFQ 236 (809)
Q Consensus 179 ~~edL~~~L~eav~fIe~a~----~kGgrVLVHC~aGvSRS~tVVIAYLM~~~gmSleeAl~ 236 (809)
..+.+...++.++.|+++.+ .+|+.|+|||++.. +=|++|+..|.+.++...
T Consensus 130 ~~EsL~~~~~R~~~~~~e~i~~~~~~gk~Vli~aHGns------LR~i~~~l~g~s~~~i~~ 185 (214)
T KOG0235|consen 130 DGESLKDCLDRLLPFWNEEIAKESKEGKNVLIVAHGNS------LRAIVKHLEGISDEAIKE 185 (214)
T ss_pred CCccHHHHHHHHHHHHHHhhhhhhcCCcEEEEEcCcHH------HHHHHHHHhcCCHhhhhh
Confidence 34567677888888887654 57899999998733 334566677787654433
No 90
>PF05763 DUF835: Protein of unknown function (DUF835); InterPro: IPR008553 The members of this archaebacterial protein entry are around 250-300 amino acid residues in length. The function of these proteins is not known.
Probab=23.43 E-value=1.8e+02 Score=28.75 Aligned_cols=51 Identities=16% Similarity=0.497 Sum_probs=37.4
Q ss_pred chHHHHHHHHHHHHHHHhcCCEEEEEcCCCCchHHHHHHHHHHhhcCCCHHHHHHHHHHHcCcccc
Q 003581 182 DITSILYDVFDYFEDVREQGGRVFVHCCQGVSRSTSLVIAYLMWREGQSFEDAFQYVKAARGVTNP 247 (809)
Q Consensus 182 dL~~~L~eav~fIe~a~~kGgrVLVHC~aGvSRS~tVVIAYLM~~~gmSleeAl~~VRs~RP~I~P 247 (809)
++....+.+++|+++ ..++-|+|-| +-|||.+.| ++.+++++...|-.+-.
T Consensus 59 ~L~~l~~~i~~fl~~--~~~~vViiD~-----------lEYL~l~Ng--F~~v~KFL~~LkD~~~~ 109 (136)
T PF05763_consen 59 NLHKLLDTIVRFLKE--NGNGVVIIDG-----------LEYLILENG--FESVLKFLASLKDYALL 109 (136)
T ss_pred hhHHHHHHHHHHHHh--CCCcEEEEec-----------HHHHHHHcC--HHHHHHHHHHhHHHeec
Confidence 344445566666665 3467899998 789999988 88899999888865533
No 91
>COG2927 HolC DNA polymerase III, chi subunit [DNA replication, recombination, and repair]
Probab=22.13 E-value=98 Score=31.20 Aligned_cols=22 Identities=23% Similarity=0.395 Sum_probs=20.0
Q ss_pred HHHHHHHHHHhcCCEEEEEcCC
Q 003581 189 DVFDYFEDVREQGGRVFVHCCQ 210 (809)
Q Consensus 189 eav~fIe~a~~kGgrVLVHC~a 210 (809)
-++.+++++...|.+|||+|..
T Consensus 17 ~~c~L~~k~~~~G~rvlI~~~d 38 (144)
T COG2927 17 AACRLAEKAWRSGWRVLIQCED 38 (144)
T ss_pred HHHHHHHHHHHcCCeEEEEeCC
Confidence 6899999999999999999943
No 92
>PRK06646 DNA polymerase III subunit chi; Provisional
Probab=21.42 E-value=1.1e+02 Score=30.87 Aligned_cols=27 Identities=7% Similarity=0.065 Sum_probs=23.0
Q ss_pred HHHHHHHHHHHHHHhcCCEEEEEcCCC
Q 003581 185 SILYDVFDYFEDVREQGGRVFVHCCQG 211 (809)
Q Consensus 185 ~~L~eav~fIe~a~~kGgrVLVHC~aG 211 (809)
..+.-++.+++++.++|.+|+|+|...
T Consensus 13 ~~~~~acrL~~Ka~~~G~rv~I~~~d~ 39 (154)
T PRK06646 13 LLLKSILLLIEKCYYSDLKSVILTADA 39 (154)
T ss_pred hHHHHHHHHHHHHHHcCCEEEEEcCCH
Confidence 456679999999999999999999653
No 93
>PF04364 DNA_pol3_chi: DNA polymerase III chi subunit, HolC; InterPro: IPR007459 The DNA polymerase III holoenzyme (2.7.7.7 from EC) is the polymerase responsible for the replication of the Escherichia coli chromosome. The holoenzyme is composed of the DNA polymerase III core, the sliding clamp, and the DnaX clamp loading complex. The DnaX complex contains either the tau or gamma product of gene dnax, complexed to delta.delta and to chi psi. Chi forms a 1:1 heterodimer with psi. The chi psi complex functions by increasing the affinity of tau and gamma for delta.delta allowing a functional clamp-loading complex to form at physiological subunit concentrations. Psi is responsible for the interaction with DnaX (gamma/tau), but psi is insoluble unless it is in a complex with chi [].; GO: 0003677 DNA binding, 0003887 DNA-directed DNA polymerase activity, 0006260 DNA replication; PDB: 3SXU_A 1EM8_C.
Probab=21.21 E-value=97 Score=30.36 Aligned_cols=24 Identities=29% Similarity=0.274 Sum_probs=18.1
Q ss_pred HHHHHHHHHHHHhcCCEEEEEcCC
Q 003581 187 LYDVFDYFEDVREQGGRVFVHCCQ 210 (809)
Q Consensus 187 L~eav~fIe~a~~kGgrVLVHC~a 210 (809)
..-++..++++.++|++|+|+|..
T Consensus 15 ~~~~c~L~~k~~~~g~rv~V~~~d 38 (137)
T PF04364_consen 15 ERFACRLAEKAYRQGQRVLVLCPD 38 (137)
T ss_dssp HHHHHHHHHHHHHTT--EEEE-SS
T ss_pred HHHHHHHHHHHHHcCCeEEEEeCC
Confidence 456889999999999999999954
No 94
>cd01534 4RHOD_Repeat_3 Member of the Rhodanese Homology Domain superfamily, repeat 3. This CD includes putative rhodanese-related sulfurtransferases which contain 4 copies of the Rhodanese Homology Domain. This CD aligns the 3rd repeat which does not contain the putative catalytic Cys residue.
Probab=20.73 E-value=1.2e+02 Score=26.97 Aligned_cols=27 Identities=26% Similarity=0.428 Sum_probs=17.7
Q ss_pred cCCEEEEEcCCCCchHHHHHHHHHHhhcCC
Q 003581 200 QGGRVFVHCCQGVSRSTSLVIAYLMWREGQ 229 (809)
Q Consensus 200 kGgrVLVHC~aGvSRS~tVVIAYLM~~~gm 229 (809)
++.+|+|+|..|. ||.. ++.+| ...|.
T Consensus 55 ~~~~iv~~c~~G~-rs~~-aa~~L-~~~G~ 81 (95)
T cd01534 55 RGARIVLADDDGV-RADM-TASWL-AQMGW 81 (95)
T ss_pred CCCeEEEECCCCC-hHHH-HHHHH-HHcCC
Confidence 4679999999987 6643 33344 44454
Done!