Query 003583
Match_columns 809
No_of_seqs 397 out of 2384
Neff 7.7
Searched_HMMs 46136
Date Fri Mar 29 02:10:58 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/003583.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/003583hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG0944 Ubiquitin-specific pro 100.0 1E-191 3E-196 1554.1 51.0 748 1-808 1-763 (763)
2 COG5207 UBP14 Isopeptidase T [ 100.0 3E-144 7E-149 1141.9 33.5 721 8-807 3-749 (749)
3 cd02669 Peptidase_C19M A subfa 100.0 2.2E-71 4.8E-76 629.3 36.8 405 176-805 10-440 (440)
4 cd02658 Peptidase_C19B A subfa 100.0 1.2E-57 2.7E-62 497.2 30.1 304 313-805 1-311 (311)
5 cd02660 Peptidase_C19D A subfa 100.0 9.3E-55 2E-59 478.2 30.3 313 312-805 1-328 (328)
6 cd02663 Peptidase_C19G A subfa 100.0 3.6E-55 7.8E-60 475.1 25.9 267 313-805 1-300 (300)
7 KOG1865 Ubiquitin carboxyl-ter 100.0 4.3E-55 9.3E-60 477.3 21.4 288 310-807 107-410 (545)
8 cd02668 Peptidase_C19L A subfa 100.0 4E-54 8.7E-59 471.9 28.0 223 313-595 1-236 (324)
9 cd02671 Peptidase_C19O A subfa 100.0 9.6E-54 2.1E-58 467.2 29.1 235 304-594 17-263 (332)
10 cd02657 Peptidase_C19A A subfa 100.0 1.7E-53 3.6E-58 463.5 26.7 283 313-805 1-305 (305)
11 cd02667 Peptidase_C19K A subfa 100.0 7.9E-54 1.7E-58 459.7 23.6 185 313-597 1-189 (279)
12 cd02664 Peptidase_C19H A subfa 100.0 6E-53 1.3E-57 462.7 24.8 208 313-595 1-214 (327)
13 cd02661 Peptidase_C19E A subfa 100.0 1.1E-51 2.4E-56 448.4 25.5 284 311-804 1-303 (304)
14 cd02659 peptidase_C19C A subfa 100.0 6.7E-51 1.4E-55 448.7 29.0 228 310-598 1-234 (334)
15 KOG1873 Ubiquitin-specific pro 100.0 5.7E-52 1.2E-56 459.2 7.1 263 190-482 90-400 (877)
16 COG5533 UBP5 Ubiquitin C-termi 100.0 2.3E-49 4.9E-54 399.5 19.7 301 310-807 70-414 (415)
17 COG5560 UBP12 Ubiquitin C-term 100.0 2.6E-49 5.6E-54 430.5 16.0 330 309-808 263-823 (823)
18 cd02662 Peptidase_C19F A subfa 100.0 4.6E-47 9.9E-52 398.1 21.2 156 313-589 1-158 (240)
19 KOG1867 Ubiquitin-specific pro 100.0 6.3E-47 1.4E-51 426.1 20.4 417 179-807 41-484 (492)
20 KOG1868 Ubiquitin C-terminal h 100.0 5.8E-44 1.2E-48 408.2 14.8 303 308-808 298-647 (653)
21 cd02674 Peptidase_C19R A subfa 100.0 4.7E-43 1E-47 365.5 19.1 201 421-805 21-230 (230)
22 cd02673 Peptidase_C19Q A subfa 100.0 7.1E-43 1.5E-47 365.1 19.6 127 411-571 22-160 (245)
23 cd02666 Peptidase_C19J A subfa 100.0 4.4E-41 9.6E-46 367.0 20.8 198 311-594 1-231 (343)
24 PF00443 UCH: Ubiquitin carbox 100.0 2.1E-40 4.6E-45 350.8 22.9 248 311-804 1-269 (269)
25 cd02257 Peptidase_C19 Peptidas 100.0 3E-38 6.5E-43 329.9 21.1 214 421-805 21-255 (255)
26 cd02665 Peptidase_C19I A subfa 100.0 1.7E-38 3.8E-43 325.9 18.6 129 422-589 22-159 (228)
27 KOG1866 Ubiquitin carboxyl-ter 100.0 2.3E-40 5E-45 365.8 4.4 230 309-601 93-332 (944)
28 COG5077 Ubiquitin carboxyl-ter 100.0 3.3E-39 7.1E-44 356.6 9.1 223 309-597 191-419 (1089)
29 cd02672 Peptidase_C19P A subfa 100.0 1.9E-35 4.1E-40 313.2 21.2 240 309-805 13-268 (268)
30 KOG4598 Putative ubiquitin-spe 100.0 4.9E-37 1.1E-41 335.4 3.5 212 307-601 83-300 (1203)
31 KOG1870 Ubiquitin C-terminal h 100.0 1.6E-34 3.5E-39 347.9 12.4 158 307-485 242-430 (842)
32 KOG2026 Spindle pole body prot 100.0 1E-32 2.3E-37 287.0 17.7 352 160-595 11-372 (442)
33 KOG1863 Ubiquitin carboxyl-ter 100.0 2.9E-33 6.4E-38 344.8 14.1 227 309-597 167-399 (1093)
34 PF13423 UCH_1: Ubiquitin carb 100.0 7E-32 1.5E-36 292.0 21.7 224 312-596 1-239 (295)
35 cd02670 Peptidase_C19N A subfa 100.0 7.3E-31 1.6E-35 271.8 16.5 117 421-598 22-138 (241)
36 KOG1864 Ubiquitin-specific pro 100.0 4.4E-29 9.6E-34 285.7 14.0 229 309-592 230-498 (587)
37 KOG1872 Ubiquitin-specific pro 100.0 2.1E-29 4.7E-34 270.7 9.3 340 309-805 103-467 (473)
38 KOG1871 Ubiquitin-specific pro 99.9 4.4E-26 9.5E-31 239.0 12.4 320 309-808 26-420 (420)
39 PF02148 zf-UBP: Zn-finger in 99.7 3E-17 6.6E-22 134.5 4.2 62 184-258 1-63 (63)
40 KOG1275 PAB-dependent poly(A) 99.6 2.1E-15 4.6E-20 172.0 14.7 228 308-592 496-760 (1118)
41 KOG0804 Cytoplasmic Zn-finger 99.6 1.8E-16 4E-21 169.1 2.4 105 130-255 183-289 (493)
42 smart00290 ZnF_UBP Ubiquitin C 99.1 7.2E-11 1.6E-15 92.3 4.5 48 183-236 1-48 (50)
43 PF00627 UBA: UBA/TS-N domain; 98.4 1.6E-07 3.5E-12 68.2 1.7 37 681-717 1-37 (37)
44 PF00627 UBA: UBA/TS-N domain; 98.3 8.5E-07 1.8E-11 64.5 4.5 37 622-659 1-37 (37)
45 cd00194 UBA Ubiquitin Associat 98.2 1.1E-06 2.5E-11 64.2 2.8 37 683-719 2-38 (38)
46 smart00165 UBA Ubiquitin assoc 98.1 1.5E-06 3.2E-11 63.2 2.9 36 683-718 2-37 (37)
47 smart00165 UBA Ubiquitin assoc 98.1 6E-06 1.3E-10 60.0 4.9 37 623-660 1-37 (37)
48 cd00194 UBA Ubiquitin Associat 98.1 7E-06 1.5E-10 60.0 5.1 37 624-661 2-38 (38)
49 smart00290 ZnF_UBP Ubiquitin C 97.4 0.00015 3.1E-09 56.5 3.1 35 40-74 10-48 (50)
50 PF15499 Peptidase_C98: Ubiqui 97.3 0.0011 2.4E-08 67.9 9.5 39 750-791 217-256 (275)
51 KOG2561 Adaptor protein NUB1, 97.3 0.00052 1.1E-08 74.8 7.0 97 622-723 374-470 (568)
52 KOG0944 Ubiquitin-specific pro 97.2 0.00024 5.2E-09 81.0 4.1 52 621-673 633-684 (763)
53 COG5207 UBP14 Isopeptidase T [ 97.1 0.00046 9.9E-09 76.1 4.3 64 664-727 540-604 (749)
54 TIGR00601 rad23 UV excision re 97.0 0.0017 3.6E-08 72.2 8.0 41 683-723 338-378 (378)
55 KOG1864 Ubiquitin-specific pro 97.0 0.0014 3.1E-08 76.6 7.5 56 750-805 509-570 (587)
56 KOG2561 Adaptor protein NUB1, 96.6 0.0017 3.7E-08 70.9 3.6 106 620-726 300-419 (568)
57 KOG2689 Predicted ubiquitin re 95.8 0.01 2.2E-07 61.3 4.5 45 627-672 4-49 (290)
58 TIGR00601 rad23 UV excision re 95.6 0.0067 1.4E-07 67.5 2.3 42 681-722 155-196 (378)
59 KOG0011 Nucleotide excision re 95.1 0.061 1.3E-06 57.3 7.5 40 683-722 299-338 (340)
60 PF02148 zf-UBP: Zn-finger in 94.7 0.018 3.9E-07 47.1 1.8 34 38-71 8-45 (63)
61 PF05408 Peptidase_C28: Foot-a 88.2 0.47 1E-05 46.6 3.4 31 310-340 32-64 (193)
62 PF09416 UPF1_Zn_bind: RNA hel 87.9 0.75 1.6E-05 44.2 4.5 64 183-252 2-68 (152)
63 KOG0011 Nucleotide excision re 87.6 0.33 7.3E-06 51.9 2.3 43 681-723 134-176 (340)
64 KOG1887 Ubiquitin carboxyl-ter 84.4 0.49 1.1E-05 56.3 1.7 38 749-789 724-763 (806)
65 PF09288 UBA_3: Fungal ubiquit 77.4 2.7 5.9E-05 33.1 3.1 29 622-650 8-36 (55)
66 PRK14890 putative Zn-ribbon RN 75.5 1.1 2.3E-05 35.8 0.4 22 182-203 37-58 (59)
67 COG2888 Predicted Zn-ribbon RN 74.2 1.2 2.6E-05 35.5 0.3 22 182-203 39-60 (61)
68 PF14555 UBA_4: UBA-like domai 69.3 3.7 8.1E-05 30.7 2.1 31 693-723 12-42 (43)
69 PF05408 Peptidase_C28: Foot-a 67.5 8.3 0.00018 38.1 4.6 28 766-793 137-164 (193)
70 KOG0418 Ubiquitin-protein liga 66.3 4.1 8.9E-05 40.2 2.2 39 681-719 161-199 (200)
71 PF02845 CUE: CUE domain; Int 65.2 4.9 0.00011 29.8 2.0 36 684-719 3-40 (42)
72 PRK06369 nac nascent polypepti 64.7 5.4 0.00012 36.6 2.6 39 680-718 74-113 (115)
73 PF09288 UBA_3: Fungal ubiquit 64.3 5 0.00011 31.7 1.9 27 681-707 8-34 (55)
74 KOG1802 RNA helicase nonsense 62.2 8 0.00017 45.5 3.9 66 182-252 61-128 (935)
75 cd02669 Peptidase_C19M A subfa 60.8 6.7 0.00015 45.1 3.1 35 37-71 24-62 (440)
76 TIGR00264 alpha-NAC-related pr 60.2 6.7 0.00015 36.0 2.3 38 680-717 76-114 (116)
77 smart00546 CUE Domain that may 56.9 12 0.00025 27.9 2.8 37 683-719 3-41 (43)
78 KOG2689 Predicted ubiquitin re 53.1 9.1 0.0002 40.2 2.2 39 687-725 5-45 (290)
79 PF08715 Viral_protease: Papai 51.4 31 0.00068 37.7 6.1 99 309-470 100-200 (320)
80 PF07499 RuvA_C: RuvA, C-termi 49.0 15 0.00033 28.0 2.4 24 683-706 4-27 (47)
81 PRK12332 tsf elongation factor 49.0 12 0.00025 38.2 2.2 29 692-720 15-43 (198)
82 KOG1873 Ubiquitin-specific pro 48.8 15 0.00033 43.7 3.3 147 518-807 677-877 (877)
83 KOG0804 Cytoplasmic Zn-finger 48.0 12 0.00025 42.0 2.2 37 40-76 239-279 (493)
84 PRK12332 tsf elongation factor 47.1 32 0.00069 35.0 5.0 41 622-663 3-44 (198)
85 COG1308 EGD2 Transcription fac 47.0 20 0.00044 33.2 3.2 38 680-717 82-120 (122)
86 TIGR00116 tsf translation elon 46.2 13 0.00028 40.1 2.2 29 692-720 15-43 (290)
87 PRK09377 tsf elongation factor 44.5 14 0.00031 39.8 2.2 29 692-720 16-44 (290)
88 TIGR00116 tsf translation elon 44.2 33 0.00071 37.1 4.8 41 622-663 3-44 (290)
89 PRK09377 tsf elongation factor 43.3 36 0.00079 36.8 5.0 41 622-663 4-45 (290)
90 smart00546 CUE Domain that may 43.2 54 0.0012 24.3 4.5 38 623-661 2-41 (43)
91 CHL00098 tsf elongation factor 42.0 17 0.00037 37.0 2.2 28 693-720 13-40 (200)
92 KOG0010 Ubiquitin-like protein 41.2 19 0.00041 41.1 2.6 37 683-719 455-492 (493)
93 CHL00098 tsf elongation factor 38.8 46 0.001 33.9 4.7 37 625-662 3-40 (200)
94 COG3478 Predicted nucleic-acid 37.8 33 0.00072 28.0 2.7 35 537-571 5-41 (68)
95 cd00729 rubredoxin_SM Rubredox 35.9 26 0.00057 24.8 1.7 13 193-205 2-14 (34)
96 PF01473 CW_binding_1: Putativ 35.2 37 0.0008 20.5 2.1 14 773-786 3-16 (19)
97 COG0264 Tsf Translation elonga 34.3 26 0.00057 37.5 2.2 26 694-719 18-43 (296)
98 PF07499 RuvA_C: RuvA, C-termi 34.1 1.2E+02 0.0026 23.1 5.2 24 624-647 4-27 (47)
99 PF02099 Josephin: Josephin; 32.1 62 0.0013 31.7 4.2 30 753-787 98-127 (157)
100 PF11547 E3_UbLigase_EDD: E3 u 31.6 33 0.00072 26.2 1.7 45 679-723 6-52 (53)
101 PF14555 UBA_4: UBA-like domai 29.6 1.4E+02 0.003 22.2 4.9 33 633-666 11-43 (43)
102 KOG3556 Familial cylindromatos 27.7 96 0.0021 35.7 5.2 26 310-335 367-392 (724)
103 PF14353 CpXC: CpXC protein 27.1 82 0.0018 29.4 4.0 11 537-547 39-49 (128)
104 cd00350 rubredoxin_like Rubred 26.8 25 0.00055 24.6 0.4 20 182-201 2-25 (33)
105 PF09855 DUF2082: Nucleic-acid 25.6 62 0.0013 26.6 2.5 35 537-571 1-37 (64)
106 COG4008 Predicted metal-bindin 25.0 66 0.0014 29.8 2.8 38 680-718 112-149 (153)
107 PF08274 PhnA_Zn_Ribbon: PhnA 24.7 44 0.00094 23.1 1.2 20 183-202 4-28 (30)
108 COG5574 PEX10 RING-finger-cont 24.5 34 0.00074 35.9 1.0 27 178-204 212-238 (271)
109 PRK09750 hypothetical protein; 24.2 84 0.0018 25.2 2.8 30 750-791 2-31 (64)
110 PRK07143 hypothetical protein; 24.1 1.6E+02 0.0034 31.8 5.9 55 693-781 149-212 (279)
111 PF07754 DUF1610: Domain of un 24.0 49 0.0011 21.6 1.3 12 190-201 13-24 (24)
112 KOG0418 Ubiquitin-protein liga 22.3 98 0.0021 30.9 3.6 38 622-660 161-198 (200)
113 COG0777 AccD Acetyl-CoA carbox 20.9 34 0.00074 36.2 0.2 21 182-202 29-56 (294)
114 PRK10220 hypothetical protein; 20.5 59 0.0013 29.5 1.5 20 183-202 5-29 (111)
115 COG1997 RPL43A Ribosomal prote 20.1 69 0.0015 27.9 1.8 17 191-207 51-67 (89)
No 1
>KOG0944 consensus Ubiquitin-specific protease UBP14 [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=1.2e-191 Score=1554.06 Aligned_cols=748 Identities=47% Similarity=0.878 Sum_probs=686.1
Q ss_pred CchhhhhhhhcCccCCCCCCCceeccccceecccCCCCCCcEEeccCccccCcchHhhhhhccCCcEEEEEEEEEecCCC
Q 003583 1 MNPMDLLRSNLSRVRIPEPTNRIFKQECCVSFDTPRSEGGLFVDLNSFLAYGKDHVGWNFEKTGNPVYLHIKQTRKLVAP 80 (809)
Q Consensus 1 ~~~~~~~~~~~~~~~~p~~~~~v~k~eC~~~f~~~~~~~gl~vcl~~f~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~ 80 (809)
|| |+.+..|++.+++|.++++||||||+||||||++++||||||+||+|||+.|+..|+.+|+|++||||+|++|++++
T Consensus 1 ~~-~~~~~~~~~~~~vp~~~~~i~kdeC~ycf~sp~~e~glyicl~~f~afg~~~v~~~f~~tg~~~yl~i~r~~k~k~~ 79 (763)
T KOG0944|consen 1 ED-MEALHSHMPTVVVPRASQVIYKDECAYCFDSPESEGGLYICLNCFLAFGREHVEEYFRKTGHSVYLHIARVKKIKEE 79 (763)
T ss_pred CC-ccchhhcCCceeecCCCCceehhhceeeccCCCCCCCEEeehhhhhhhhhHHHHHHHhhcCceEEEEeccccchhhc
Confidence 45 78889999999999999999999999999999999999999999999999999999999999999999999999876
Q ss_pred C---CCCCCCCceeeeeccCCCCCCccCceeeEEEEEecCCccccCCCCCCcH-HH--HHHHHHHHhccChhHHHHHHhh
Q 003583 81 E---DRPSKKPTLLAIGVEGGFDNNEAEYDETHSIVILPEYVTLSYPSVELPE-KV--RLAVDAILMAEGAERKEQVAAW 154 (809)
Q Consensus 81 ~---~~~~~~~~kl~i~~~~g~~~~~~~y~~~~~~~~~~~~~~~~~~~~~~~~-~~--~~~~~~i~~~~~~~~~~~~~~w 154 (809)
. .+|+.|+|||+||++ +.+++.|.||++|+...+.+++..+++ .+ .+.+.+++.|.+..+++.+.+|
T Consensus 80 ~~~~~~p~~K~tkl~i~~d-------~e~~d~~~iv~~p~~~~~~i~n~~~~~~i~~~~e~i~a~~sa~~~~~k~~~~aW 152 (763)
T KOG0944|consen 80 GAEGAEPKRKITKLEIGED-------LECEDVYDIVVVPDDLEIAIKNIQLLPEIVSATEAIEAMLSAISPSRKDRVNAW 152 (763)
T ss_pred cCcCCCccccceeEEeccc-------cccceeEEEEEeccccccccCCccccHHHHHHHHHHHHHHhhcCcchhhhhhhh
Confidence 4 478899999999986 367889999999988888888755544 44 4668999999999999999999
Q ss_pred hhcCCCCCcccccccccCCCcccCCCCccccccCCCCCeEEecccCcccccCCcCCCCCCCchHhhHhhhcCccEEEeeC
Q 003583 155 TADKKQTSAYAMNLQQIDNGVIIPPSGWKCAKCDKRDNLWLNLTDGMILCGRRNWDGTGGNNHAVEHYKETGYPLAVKLG 234 (809)
Q Consensus 155 ~~~~~~~c~h~~~l~q~~~~~~~~~~~~~C~~C~~~~~lw~CL~Cg~~~Cgr~~~~g~~gn~ha~~H~~~~~H~~~v~lg 234 (809)
++|++..|.|..+|.|++++..+++++|+|+.|++++|||+||+||.|||||.||||.||||||+.||++|+||||||||
T Consensus 153 d~Evr~v~k~~~nl~q~dng~~~~~~gwkCs~CDL~~NLWlcLtcG~v~CGR~qfg~~GgNgHA~~HYr~tghPLaVKLg 232 (763)
T KOG0944|consen 153 DNEVRTVSKHANNLSQIDNGKRIPPSGWKCSKCDLTENLWLCLTCGSVGCGRKQFGGSGGNGHALSHYRETGHPLAVKLG 232 (763)
T ss_pred hhheeeccCCCCChhhcccCcccCCCcceecccCcccceEEEeccCceeecceeecCCCCCcchHHhhhhcCCceEEEec
Confidence 99998999999999999999888999999999999999999999999999999999999999999999999999999999
Q ss_pred ccccCCCCcEEEeccCCCcccchhHHHHHHhhccccccccccccchhhhhhhccccccccccccCCCccccccCCccccc
Q 003583 235 TITSDLEGADVFSYPEDDSVVDPLLAQHLAFFGIDFSSLQKTEMTTAERELDQNTNFDWNRIQESGQDVEPLFGPGYTGL 314 (809)
Q Consensus 235 tit~~~~~~~v~cy~cd~~v~d~~l~~~L~~~gi~~~~~~kteksl~el~~~~n~~~e~~~~~e~g~~l~p~~~~g~~GL 314 (809)
|||+| ++|||||.||++|.||+|++||+|||||+..|.||||+|.|+++++|..|+|.+++++|..++|++|||+|||
T Consensus 233 sIs~d--g~DvycY~cDd~v~dPnl~~hl~hfGId~~~m~kteksl~elel~~N~i~Ew~~~~esg~~l~p~~gpgytGl 310 (763)
T KOG0944|consen 233 SISPD--GADVYCYDCDDEVRDPNLESHLSHFGIDMAKMDKTEKSLVELELDQNRIWEWEALEESGAPLEPLFGPGYTGL 310 (763)
T ss_pred ccCCC--ccceeeecccccccCccHHHHHHhcCccHHHhccchhHHHHHHHHhhcccCceeeccCCCccccccCCCccce
Confidence 99998 7999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ccCCChhhHHHHHHHHhchHHHHHHHhcCCchhhhhccCCCCCCccHHHHHHHHHHHHhcCCCCCChhhhhhhhhccccC
Q 003583 315 VNLGNSCYLAATMQVMFSTHAFCTRYYTQEPLKAAFEAAPADPTVDLNMQLTKLAHGLLSGKYSVPAQEKDAAANAATTT 394 (809)
Q Consensus 315 ~NLGNTCYmNSVLQ~L~~ip~f~~~~l~~~~~~~~~~~~~~~p~~~l~~ql~kL~~~l~sg~ys~~~~~~~~~~~~~~~~ 394 (809)
+|||||||||||||+|+++|.|..+|+.. .++|.+.+.+|.++|.|||.||+++|.+|+||.|..+
T Consensus 311 ~NlGNSCYlnSVmQ~Lf~i~~fq~~~~~~---~~~f~~~~~~P~ndf~cQ~~Kl~~gm~sgkys~p~~~----------- 376 (763)
T KOG0944|consen 311 INLGNSCYLNSVMQSLFSIPSFQRRYLEQ---ERIFNCYPKDPTNDFNCQLAKLLHGMLSGKYSKPLMD----------- 376 (763)
T ss_pred eecCcchhHHHHHHHheecccHHHhhccc---cceeecCCCCcchhHHHHHHHHHHHhhcCcccCccCC-----------
Confidence 99999999999999999999999999865 5778888999999999999999999999999987332
Q ss_pred CCCCCCCChHHHHHHHHhhCCCCCCcccCCHHHHHHHHHHHHHHHhCCCCCCCCcCccceEEEEEEEe-cCCCEeeeeec
Q 003583 395 DTKQEGIPPRMFKAVIAASHPEFSSMRQQDALEFFLHFVDQVERVHSGKPEVDPTKSFKFGIEERISC-PSGKVAYNRRL 473 (809)
Q Consensus 395 ~~~~~~I~P~~f~~~i~~~~~~F~~~~QQDA~EFl~~LLd~L~~~~~~~~~~~i~~~F~g~l~~~i~C-~C~~vs~~~e~ 473 (809)
...+.+|+|.+|+.+||+.||+|++++||||+|||++||+.|++..+... .+|+++|+|.++.|++| .|.+|+|+.+.
T Consensus 377 ~~~qngIsP~mFK~~igknHpeFst~~QQDA~EFllfLl~ki~~n~rs~~-~nptd~frF~ve~Rv~C~~c~kVrYs~~~ 455 (763)
T KOG0944|consen 377 PSNQNGISPLMFKALIGKNHPEFSTNRQQDAQEFLLFLLEKIRENSRSSL-PNPTDLFRFEVEDRVSCLGCRKVRYSYES 455 (763)
T ss_pred ccccCCcCHHHHHHHHcCCCccccchhhhhHHHHHHHHHHHHhhcccccC-CCHHHHHHhhhhhhhhhhccccccccchh
Confidence 12378999999999999999999999999999999999999998876432 68999999999999999 99999999999
Q ss_pred CeeeeeccCCccccchHHHHHHHHHHHhhhccCCCCCcccccCCCccHHHHHhhhcCCcccCcccCCCCCCccceeEEee
Q 003583 474 DYILSLGIPLDEATNKEELAAFQKLKMERISEGKDVTNEEIVRPRVPLEACLSTFSAPEELPDFYSTALKAKTTATKSAG 553 (809)
Q Consensus 474 ~~~LsL~ip~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~sL~~cL~~f~~~E~le~~~C~~C~~~~~a~k~~~ 553 (809)
.+.|.||||... .++.++++.+||++||.| .+++|+|++||.+..|+|+++
T Consensus 456 ~~~i~lpv~~~~----------------------------~v~~~v~~~~cleaff~p-q~~df~s~ac~~K~~a~kt~~ 506 (763)
T KOG0944|consen 456 EYLIQLPVPMTN----------------------------EVREKVPISACLEAFFEP-QVDDFWSTACGEKKGATKTTR 506 (763)
T ss_pred heeeEeeccccc----------------------------cccccCCHHHHHHHhcCC-cchhhhhHhhcCccccccccc
Confidence 999999998622 134568999999999999 666699999999999999999
Q ss_pred ccccCceeEEEEeeEEEccCceeeeceeeecCCCccccccccCCCCCCCCCCCCCCCCCCcccCCCCCCcHHHHHHHHhc
Q 003583 554 LTSFPDYLVLHMRKFVMEAGWVPKKLDVYIDVPDIIDISHMRSKGLQPGEELLPEGGPEDEVQSNKPVANKDIVSQLVSM 633 (809)
Q Consensus 554 i~~lP~vLiI~LkRF~~~~~~~~~Ki~~~V~fP~~LDL~~~~~~~~~~~e~~l~~~~~~~~~~~~~~~~~~~~~~ql~~m 633 (809)
|++||+||+||++||.+. +|+++|+++.|++|+.|||+.|++.|+++||++||++.+.. .++.+|+..+.||.+|
T Consensus 507 ~ksfP~yLiiqv~rf~~~-dw~pkKld~~iempe~ldls~~rs~g~~p~ee~lpde~~~~----~~~~~d~s~i~qL~~M 581 (763)
T KOG0944|consen 507 FKSFPDYLIIQVGRFTLQ-DWVPKKLDVSIEMPEELDLSSYRSKGLQPGEEALPDEAPET----SEFAADRSVISQLVEM 581 (763)
T ss_pred cccCCceEEEEeeEEEec-CceeeeeccceecchhhchhhhhhcCCCCcccccCCcCccc----CccchhHHHHHHHHHc
Confidence 999999999999999995 99999999999999999999999999999999999987753 4588999999999999
Q ss_pred CCChHHHHHHHHHhCCccHHHHHHHhhhcCCCCCCCCCC--cccc--c-cccCChhhhhhhhcCCCCHHHHHHHHHHcCC
Q 003583 634 GFNHLHCEKAAVNTSNAGVEEAMNWLLSHMDDPDIDMPL--SQET--Q-CAAIDQSKVETLLSFGFSEEVARNALKASGG 708 (809)
Q Consensus 634 gf~~~~~~~a~~~t~n~~~e~a~~wl~~h~dd~d~~~p~--~~~~--~-~~~~~~~~~~~l~~mgf~~~~a~~aL~~~~~ 708 (809)
|||+++|+||++.|||+++|+||||||+||+||||++|+ |+.. + +..++++.+.++++|||++.||++||++++|
T Consensus 582 GFp~eac~rAly~tgN~~aEaA~NWl~~HMdDpd~~~p~vvp~~~~~a~~~~~~e~~v~si~smGf~~~qa~~aL~~~n~ 661 (763)
T KOG0944|consen 582 GFPEEACRRALYYTGNSGAEAASNWLMEHMDDPDIDDPFVVPGNSPKADAREVDEESVASIVSMGFSRNQAIKALKATNN 661 (763)
T ss_pred CCCHHHHHHHHhhhcCccHHHHHHHHHHhccCcccCCceecCCCCCccccCCCChhHheeeeeecCcHHHHHHHHHhcCc
Confidence 999999999999999999999999999999999999999 5432 2 2379999999999999999999999999999
Q ss_pred ChhhhccccccCCCCCCCcccccccCCC---CCCCCCCCCCCCCceEEEEEEEeeeccCCCccEEEEEEeeCCcEEEEeC
Q 003583 709 DIEKATDWIFNNPDASTSSDMDAATSST---AQTPADAGLPDGGGKYRLFGIVSHIGTSTQCGHYVAHILKDGRWAIFND 785 (809)
Q Consensus 709 ~~~~a~dwlfs~~dd~~~~~~~~~~~~~---~~~~~~~~~~~~~~~Y~L~avI~H~G~s~~sGHYva~ikk~~~W~~fND 785 (809)
|++||+||||+|+|+.-+......+++. .+.++.++ .+++++|+|+|||+|+|+|+++|||||||||+|+||+|||
T Consensus 662 nveravDWif~h~d~~~ed~~~~~s~~~~~~~~~~~~~~-~dg~~~Y~L~a~IsHmGts~~sGHYV~hirKegkWVlfND 740 (763)
T KOG0944|consen 662 NVERAVDWIFSHMDIPVEDAAEGESSSAIESESTPSGTG-KDGPGKYALFAFISHMGTSAHSGHYVCHIRKEGKWVLFND 740 (763)
T ss_pred cHHHHHHHHHhcccccccccCcCCCCCcchhhcCCcccC-CCCCcceeEEEEEecCCCCCCCcceEEEEeecCcEEEEcc
Confidence 9999999999999932111111111111 12233333 8999999999999999999999999999999999999999
Q ss_pred ceeecccCCCCCceEEEEEEecC
Q 003583 786 NKVGASVDPPKEMGYLYFFERLN 808 (809)
Q Consensus 786 ~kV~~~~~~~~~~~Yi~~Y~R~~ 808 (809)
+||..+++|++++||||||+|++
T Consensus 741 eKv~~S~~ppK~lgYvY~y~R~~ 763 (763)
T KOG0944|consen 741 EKVAASQEPPKDLGYVYLYTRIA 763 (763)
T ss_pred hhhhhccCChhhcceEEEEEecC
Confidence 99999999999999999999984
No 2
>COG5207 UBP14 Isopeptidase T [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=3.2e-144 Score=1141.93 Aligned_cols=721 Identities=26% Similarity=0.420 Sum_probs=615.7
Q ss_pred hhhcC--ccCCCCCCCceeccccceecccCCCCCCcEEeccCccccCcchHhhhhh-----ccCCcEEEEEEEEEecCCC
Q 003583 8 RSNLS--RVRIPEPTNRIFKQECCVSFDTPRSEGGLFVDLNSFLAYGKDHVGWNFE-----KTGNPVYLHIKQTRKLVAP 80 (809)
Q Consensus 8 ~~~~~--~~~~p~~~~~v~k~eC~~~f~~~~~~~gl~vcl~~f~~~~~~~~~~~~~-----~~~~~~~l~~~~~~~~~~~ 80 (809)
++|+. .+.+|....+||||||+|||.|++.++||+|||+|||++|.+|..+|.. +|=|.+|+.|.+.. ||++
T Consensus 3 ~~H~e~ae~vlpn~~av~~reeC~yCf~S~~~e~si~vClnCfqs~C~~h~~~H~~~~~~c~tvh~i~~tia~~~-PKQe 81 (749)
T COG5207 3 FSHSEMAEMVLPNLPAVRFREECCYCFRSIGDEHSISVCLNCFQSFCEKHRGIHLGTKSGCRTVHDIKETIADLG-PKQE 81 (749)
T ss_pred CchhhhhhhcCCCCchhhhhhhhheeeccCCCCcceehHHHHhHhhhhhccceeecchhhhhhhhhhhhhhhhcC-chhh
Confidence 46654 6778888889999999999999999999999999999999998888874 67789999999886 5554
Q ss_pred -CCCCCCCCceeeeeccCCCCCCccCceeeEEEEEecCCccccCCCCCCcHHHHHHHHHHHhccChhHHHHHHhhhhcCC
Q 003583 81 -EDRPSKKPTLLAIGVEGGFDNNEAEYDETHSIVILPEYVTLSYPSVELPEKVRLAVDAILMAEGAERKEQVAAWTADKK 159 (809)
Q Consensus 81 -~~~~~~~~~kl~i~~~~g~~~~~~~y~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~w~~~~~ 159 (809)
.++++.|.+||.|... +|++.|++.|-..++-+... . ...++.+.+.++++.+|.++...++..+|+.| +
T Consensus 82 ~~eE~~nK~ikl~~~e~----seed~~~~~~VPr~vl~k~t--~--s~~s~~~~~kiE~m~~a~k~~~ed~~~~w~~E-~ 152 (749)
T COG5207 82 NVEENNNKKIKLKNAEL----SEEDVEELRRVPRTVLSKST--D--SDISSTALEKIERMEIAIKPGDEDERVLWRDE-E 152 (749)
T ss_pred ccccCccceeeeeeecc----chhhhHHhhccchhhccccc--c--cccchhhHHHHHHHHHhcCCCchhhhhhhhhh-c
Confidence 3677788999998876 78899998874444432221 1 24677788999999999999999999999999 5
Q ss_pred CCCcccccccccCCCcccCCCCccccccCCCCCeEEecccCcccccCCcCCCCCCCchHhhHhhhcCccEEEeeCccccC
Q 003583 160 QTSAYAMNLQQIDNGVIIPPSGWKCAKCDKRDNLWLNLTDGMILCGRRNWDGTGGNNHAVEHYKETGYPLAVKLGTITSD 239 (809)
Q Consensus 160 ~~c~h~~~l~q~~~~~~~~~~~~~C~~C~~~~~lw~CL~Cg~~~Cgr~~~~g~~gn~ha~~H~~~~~H~~~v~lgtit~~ 239 (809)
..|+|..++...... .-+..+.+|+.|++..|||+||+||++||||.|| |.+|||||+.||++|+||+||||++|+.+
T Consensus 153 ~tC~H~~n~~~~s~~-~~ni~~~~Cs~CDl~~nLW~Cl~CG~vgCGR~Qy-G~~GngHAlsHY~~t~Hplavkl~Sls~~ 230 (749)
T COG5207 153 VTCVHGCNEGPSSIE-MGNIGGLKCSLCDLKTNLWVCLSCGYVGCGRMQY-GAEGNGHALSHYEETQHPLAVKLPSLSKE 230 (749)
T ss_pred ccccccCCCCCCccc-ccccCCceeccccchhceEEEEecCcccccceee-cCCCCcchhhhhhccCCceEEEccccccc
Confidence 999999877422111 1234568999999999999999999999999999 67779999999999999999999999964
Q ss_pred CCCcEEEeccCCCcc-cch--hHHHHHHhhccccccccccccchhhhhhhccccccccccccCCCccccccCCc-ccccc
Q 003583 240 LEGADVFSYPEDDSV-VDP--LLAQHLAFFGIDFSSLQKTEMTTAERELDQNTNFDWNRIQESGQDVEPLFGPG-YTGLV 315 (809)
Q Consensus 240 ~~~~~v~cy~cd~~v-~d~--~l~~~L~~~gi~~~~~~kteksl~el~~~~n~~~e~~~~~e~g~~l~p~~~~g-~~GL~ 315 (809)
.++||||.||+++ .++ ++..++..||||+.+..++|||+.++|+++|.+|+|.+..++++... .++|+ ++||.
T Consensus 231 --~~diyCY~CD~e~R~~~n~n~~s~~~~fGinIa~~~~~Eksl~~lq~eqn~nw~F~~~~~~~~sk~-~~~ps~~~Gli 307 (749)
T COG5207 231 --DCDIYCYLCDSEIRSRYNSNENSVTIDFGINIADGKTEEKSLRKLQSEQNANWEFLEKKRAPESKG-ESVPSPYVGLI 307 (749)
T ss_pred --cccEEEEecCcccccCCcccccceeeeeccchhhccchHHHHHHHHHhhhcCcchhccccCchhhc-ccCCCCccceE
Confidence 9999999999996 444 78889999999999999999999999999999999999888776653 45566 89999
Q ss_pred cCCChhhHHHHHHHHhchHHHHHHHhcCCchhhhhccCCCCCCccHHHHHHHHHHHHhcCCCCCChhhhhhhhhccccCC
Q 003583 316 NLGNSCYLAATMQVMFSTHAFCTRYYTQEPLKAAFEAAPADPTVDLNMQLTKLAHGLLSGKYSVPAQEKDAAANAATTTD 395 (809)
Q Consensus 316 NLGNTCYmNSVLQ~L~~ip~f~~~~l~~~~~~~~~~~~~~~p~~~l~~ql~kL~~~l~sg~ys~~~~~~~~~~~~~~~~~ 395 (809)
|||||||+|||||.|++...+..-+... .+.+.+....|..||.|||.||+.+|.+. | ..
T Consensus 308 NlGNsCYl~SviqSlv~~~v~~~~~d~l---~~~~~~~~~~P~~~l~CQl~kll~~mk~~----p-------------~~ 367 (749)
T COG5207 308 NLGNSCYLSSVIQSLVGYAVSKEEFDLL---QHFEICYMKNPLECLFCQLMKLLSKMKET----P-------------DN 367 (749)
T ss_pred ecCCeeeHHHHHHHHhccccchhhhhhh---ccceeeeecCCchhHHHHHHHHHhhccCC----C-------------Cc
Confidence 9999999999999999988887665432 34455567789999999999999988653 2 23
Q ss_pred CCCCCCChHHHHHHHHhhCCCCCCcccCCHHHHHHHHHHHHHHHhCCCCCCCCcCccceEEEEEEEe-cCCCEeeeeecC
Q 003583 396 TKQEGIPPRMFKAVIAASHPEFSSMRQQDALEFFLHFVDQVERVHSGKPEVDPTKSFKFGIEERISC-PSGKVAYNRRLD 474 (809)
Q Consensus 396 ~~~~~I~P~~f~~~i~~~~~~F~~~~QQDA~EFl~~LLd~L~~~~~~~~~~~i~~~F~g~l~~~i~C-~C~~vs~~~e~~ 474 (809)
.++.+|+|.+|+.+||+.||+|.+.+||||+|||++||+.|++.......+.|+++|.|.++.+++| .|+.|+|++++.
T Consensus 368 ~y~ngi~p~~fk~~igq~h~eFg~~~QQDA~EFLlfLL~kirk~~~S~~~~~It~lf~Fe~e~rlsC~~C~~v~ySye~~ 447 (749)
T COG5207 368 EYVNGISPLDFKMLIGQDHPEFGKFAQQDAHEFLLFLLEKIRKGERSYLIPPITSLFEFEVERRLSCSGCMDVSYSYESM 447 (749)
T ss_pred cccCCcChhhHHHHHcCCchhhhhhhhhhHHHHHHHHHHHHhhccchhcCCCcchhhhhhhcceecccccccccccccce
Confidence 6899999999999999999999999999999999999999999888777789999999999999999 999999999999
Q ss_pred eeeeeccCCccccchHHHHHHHHHHHhhhccCCCCCcccccCCCccHHHHHhhhcCCcccCcccCCCCCCccceeEEeec
Q 003583 475 YILSLGIPLDEATNKEELAAFQKLKMERISEGKDVTNEEIVRPRVPLEACLSTFSAPEELPDFYSTALKAKTTATKSAGL 554 (809)
Q Consensus 475 ~~LsL~ip~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~sL~~cL~~f~~~E~le~~~C~~C~~~~~a~k~~~i 554 (809)
..+.+++.... ..+++.+||++||.+.+++ |.|.+|+.+..|+++..|
T Consensus 448 ~~i~i~le~n~-------------------------------E~~di~~~v~a~f~pdtiE-~~CenCk~K~~a~~k~~~ 495 (749)
T COG5207 448 LMICIFLEGND-------------------------------EPQDIRKSVEAFFLPDTIE-WSCENCKGKKKASRKPFI 495 (749)
T ss_pred EEEEeecccCc-------------------------------chhhHHHHHHheECcccee-eehhhhcCcccccccchh
Confidence 88888763211 1268999999999999999 999999999999999999
Q ss_pred cccCceeEEEEeeEEEccCceeeeceeeecCCC--ccccccccCCCCCCCCCCCCCCCCCCcccCCCCCCcHHHHHHHHh
Q 003583 555 TSFPDYLVLHMRKFVMEAGWVPKKLDVYIDVPD--IIDISHMRSKGLQPGEELLPEGGPEDEVQSNKPVANKDIVSQLVS 632 (809)
Q Consensus 555 ~~lP~vLiI~LkRF~~~~~~~~~Ki~~~V~fP~--~LDL~~~~~~~~~~~e~~l~~~~~~~~~~~~~~~~~~~~~~ql~~ 632 (809)
++||+|||||..||.+. +|..+|+..++.+.. .++++.|++.-....|.+||++. +.|.+|+.+++||.+
T Consensus 496 kslPk~LIlq~~R~~lq-ny~v~kls~pi~~~~D~m~~~~s~msk~~PqtEn~LPded-------E~~t~Nqs~I~qL~~ 567 (749)
T COG5207 496 KSLPKYLILQVGRYSLQ-NYKVEKLSDPIEMRSDDMIKLGSFMSKFDPQTENLLPDED-------EAFTDNQSLIRQLVD 567 (749)
T ss_pred hccCceeEEecceeecc-ceeehhccCceEEccccccchhhHhhccCCcccccCCccc-------cccCchHHHHHHHHH
Confidence 99999999999999998 899999999998874 69999999995555899999865 348899999999999
Q ss_pred cCCChHHHHHHHHHhCCccHHHHHHHhhhcCCCCCCCCCC-cc---ccccccCChhhhhhhhcCCCCHHHHHHHHHHcCC
Q 003583 633 MGFNHLHCEKAAVNTSNAGVEEAMNWLLSHMDDPDIDMPL-SQ---ETQCAAIDQSKVETLLSFGFSEEVARNALKASGG 708 (809)
Q Consensus 633 mgf~~~~~~~a~~~t~n~~~e~a~~wl~~h~dd~d~~~p~-~~---~~~~~~~~~~~~~~l~~mgf~~~~a~~aL~~~~~ 708 (809)
||||+++|.|||.+|||+++|.||||||+||||||+++|| |. +..+.+|+++.+.+|.+|||+..+||+||...++
T Consensus 568 mGfp~~~~~rAL~~tgNqDaEsAMNWLFqHMdDPdlndP~~~~~~vPKkDkeVdE~~~~Slle~Gln~n~~Rkal~~~n~ 647 (749)
T COG5207 568 MGFPEEDAARALGITGNQDAESAMNWLFQHMDDPDLNDPFVPPPNVPKKDKEVDESKARSLLENGLNPNLCRKALMDMNT 647 (749)
T ss_pred cCCCHHHHHHHHhhccCcchHHHHHHHHhhccCcccCCCCCCCCCCCcccccccHHHHHHHHHcCCCHHHHHHHHHHccC
Confidence 9999999999999999999999999999999999999999 32 4556699999999999999999999999999999
Q ss_pred ChhhhccccccCCCCCCCcccccccCCCCCCCC-CCCCCCCCceEEEEEEEeeeccCCCccEEEEEEeeC----CcEEEE
Q 003583 709 DIEKATDWIFNNPDASTSSDMDAATSSTAQTPA-DAGLPDGGGKYRLFGIVSHIGTSTQCGHYVAHILKD----GRWAIF 783 (809)
Q Consensus 709 ~~~~a~dwlfs~~dd~~~~~~~~~~~~~~~~~~-~~~~~~~~~~Y~L~avI~H~G~s~~sGHYva~ikk~----~~W~~f 783 (809)
|++|+|+|+|+|+|.- .+++.-.....+... ...+.. ..|.|.|||||+|+|+|+||||+||||. -+|++|
T Consensus 648 d~~r~V~w~~N~~D~t--F~EP~v~~eeqqqk~~~~~STa--~PYaLtAvI~HkG~s~haGHYv~fIrk~~~~K~kWvl~ 723 (749)
T COG5207 648 DSKRRVVWCINDDDGT--FPEPEVPNEEQQQKKDLGYSTA--KPYALTAVICHKGDSIHAGHYVWFIRKNGKDKWKWVLK 723 (749)
T ss_pred CchheEEEEEeCCCCC--CCCCCCCchhhhhccccccccc--CcccceeEEeccCCcccccceEEEEecccCcceeEEEE
Confidence 9999999999966532 211111111111111 222233 3499999999999999999999999984 379999
Q ss_pred eCceeecc--cCCCCCceEEEEEEec
Q 003583 784 NDNKVGAS--VDPPKEMGYLYFFERL 807 (809)
Q Consensus 784 ND~kV~~~--~~~~~~~~Yi~~Y~R~ 807 (809)
||+||... .++.+++||||||+|.
T Consensus 724 nDek~v~~~svE~~k~nGYiylf~R~ 749 (749)
T COG5207 724 NDEKTVLNSSVEVLKDNGYIYLFKRC 749 (749)
T ss_pred ccchheehhhHHHHhhCCeEEEEecC
Confidence 99999965 4689999999999995
No 3
>cd02669 Peptidase_C19M A subfamily of Peptidase C19. Peptidase C19 contains ubiquitinyl hydrolases. They are intracellular peptidases that remove ubiquitin molecules from polyubiquinated peptides by cleavage of isopeptide bonds. They hydrolyze bonds involving the carboxyl group of the C-terminal Gly residue of ubiquitin. The purpose of the de-ubiquitination is thought to be editing of the ubiquitin conjugates, which could rescue them from degradation, as well as recycling of the ubiquitin. The ubiquitin/proteasome system is responsible for most protein turnover in the mammalian cell, and with over 50 members, family C19 is one of the largest families of peptidases in the human genome.
Probab=100.00 E-value=2.2e-71 Score=629.27 Aligned_cols=405 Identities=19% Similarity=0.293 Sum_probs=325.3
Q ss_pred ccCCCC-ccccccCCCCCeEEecccCcccccCCcCCCCCCCchHhhHhhhcCccEEEeeCccccCCCCcEEEeccCCCcc
Q 003583 176 IIPPSG-WKCAKCDKRDNLWLNLTDGMILCGRRNWDGTGGNNHAVEHYKETGYPLAVKLGTITSDLEGADVFSYPEDDSV 254 (809)
Q Consensus 176 ~~~~~~-~~C~~C~~~~~lw~CL~Cg~~~Cgr~~~~g~~gn~ha~~H~~~~~H~~~v~lgtit~~~~~~~v~cy~cd~~v 254 (809)
.++... ..|+.|..+.|+|+||+||.++||| |+++||+.|+.+++|+++|+|+ +++||||.||++|
T Consensus 10 ~ldfd~e~~C~~~~~~~n~~~CL~cg~~~~g~------~~~~ha~~H~~~~~H~~~v~l~-------t~~~yc~~~~~~v 76 (440)
T cd02669 10 VLDFDFEKVCSVSLSNLNVYACLVCGKYFQGR------GKGSHAYTHSLEDNHHVFLNLE-------TLKFYCLPDNYEI 76 (440)
T ss_pred hccccccccccccCCCCcEEEEcccCCeecCC------CCCcHHHHHhhccCCCEEEECC-------CCCEEEeCCCCEE
Confidence 455544 4699999999999999999887755 4789999999999999999995 7999999999999
Q ss_pred cchhHHHHHHhhccccccccccccchhhhhhhccccccccccccCCCccccccCCcccccccCCChhhHHHHHHHHhchH
Q 003583 255 VDPLLAQHLAFFGIDFSSLQKTEMTTAERELDQNTNFDWNRIQESGQDVEPLFGPGYTGLVNLGNSCYLAATMQVMFSTH 334 (809)
Q Consensus 255 ~d~~l~~~L~~~gi~~~~~~kteksl~el~~~~n~~~e~~~~~e~g~~l~p~~~~g~~GL~NLGNTCYmNSVLQ~L~~ip 334 (809)
.|+.|++++ +++++ .+|++.+.+ ++.+.+| .. ...+ +.++||++||.|+|||||||||||+|+++|
T Consensus 77 ~d~~l~~i~--~~~~~---~~~~~~i~~--~~~~~~~--~~-~~~~----~~~~~G~vGL~NlGnTCYmNsvLQ~L~~~p 142 (440)
T cd02669 77 IDSSLDDIK--YVLNP---TYTKEQISD--LDRDPKL--SR-DLDG----KPYLPGFVGLNNIKNNDYANVIIQALSHVK 142 (440)
T ss_pred eCccHHHHH--HHhcC---CCCHHHHHH--hhhcccc--cc-ccCC----CCccCCccCccCCCCchHHHHHHHHHHCCH
Confidence 999999988 44444 467776664 4555554 11 2222 357899999999999999999999999999
Q ss_pred HHHHHHhcCCchhhhhccCCCCCCccHHHHHHHHHHHHhcCCCCCChhhhhhhhhccccCCCCCCCCChHHHHHHHHhh-
Q 003583 335 AFCTRYYTQEPLKAAFEAAPADPTVDLNMQLTKLAHGLLSGKYSVPAQEKDAAANAATTTDTKQEGIPPRMFKAVIAAS- 413 (809)
Q Consensus 335 ~f~~~~l~~~~~~~~~~~~~~~p~~~l~~ql~kL~~~l~sg~ys~~~~~~~~~~~~~~~~~~~~~~I~P~~f~~~i~~~- 413 (809)
+||++|+...+.. .......++.++|+.++..||+.. ..+..|+|..|+..++..
T Consensus 143 ~lr~~~l~~~~~~-----~~~~~~~~l~~~l~~l~~kl~~~~-------------------~~~~~isP~~fl~~l~~~~ 198 (440)
T cd02669 143 PIRNFFLLYENYE-----NIKDRKSELVKRLSELIRKIWNPR-------------------NFKGHVSPHELLQAVSKVS 198 (440)
T ss_pred HHHHHHhhccccc-----cccCCCcHHHHHHHHHHHHHhccc-------------------cCCCccCHHHHHHHHHhhc
Confidence 9999999653211 011245679999999999999751 246789999999999775
Q ss_pred CCCCCCcccCCHHHHHHHHHHHHHHHhCC---CCCCCCcCccceEEEEEEEe-cCC---------------CEeeeeecC
Q 003583 414 HPEFSSMRQQDALEFFLHFVDQVERVHSG---KPEVDPTKSFKFGIEERISC-PSG---------------KVAYNRRLD 474 (809)
Q Consensus 414 ~~~F~~~~QQDA~EFl~~LLd~L~~~~~~---~~~~~i~~~F~g~l~~~i~C-~C~---------------~vs~~~e~~ 474 (809)
++.|++++||||+|||++|||.|++++.. ...++++++|+|++++.++| .|. .++.+.++|
T Consensus 199 ~~~f~~~~QqDA~EFl~~LLd~L~~~l~~~~~~~~~ii~~~F~G~l~~~~~c~~~~~~~~~~~~~~~~c~~~~s~~~~pF 278 (440)
T cd02669 199 KKKFSITEQSDPVEFLSWLLNTLHKDLGGSKKPNSSIIHDCFQGKVQIETQKIKPHAEEEGSKDKFFKDSRVKKTSVSPF 278 (440)
T ss_pred ccccCCcccCCHHHHHHHHHHHHHHHhccCCCCCCCcceeccCceEEEEEEeecccccccccccccccccccceeeeccc
Confidence 46799999999999999999999999874 24578999999999999998 765 356778999
Q ss_pred eeeeeccCCccccchHHHHHHHHHHHhhhccCCCCCcccccCCCccHHHHHhhhcCCcccCcccCCCCCCccceeEEeec
Q 003583 475 YILSLGIPLDEATNKEELAAFQKLKMERISEGKDVTNEEIVRPRVPLEACLSTFSAPEELPDFYSTALKAKTTATKSAGL 554 (809)
Q Consensus 475 ~~LsL~ip~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~sL~~cL~~f~~~E~le~~~C~~C~~~~~a~k~~~i 554 (809)
++|+|+||....... .......+.++|++||+.|. |+.|.....++|+.+|
T Consensus 279 ~~LsLdip~~~~~~~--------------------~~~~~~l~~~~l~e~L~ky~---------~~~c~~~~~a~k~~~I 329 (440)
T cd02669 279 LLLTLDLPPPPLFKD--------------------GNEENIIPQVPLKQLLKKYD---------GKTETELKDSLKRYLI 329 (440)
T ss_pred eEEEecCCCCccccc--------------------cccccccCcccHHHHHHhcC---------CccceecccceEEEEE
Confidence 999999987542110 00112345689999997654 5667777888999999
Q ss_pred cccCceeEEEEeeEEEccCceeeeceeeecCCCc-cccccccCCCCCCCCCCCCCCCCCCcccCCCCCCcHHHHHHHHhc
Q 003583 555 TSFPDYLVLHMRKFVMEAGWVPKKLDVYIDVPDI-IDISHMRSKGLQPGEELLPEGGPEDEVQSNKPVANKDIVSQLVSM 633 (809)
Q Consensus 555 ~~lP~vLiI~LkRF~~~~~~~~~Ki~~~V~fP~~-LDL~~~~~~~~~~~e~~l~~~~~~~~~~~~~~~~~~~~~~ql~~m 633 (809)
.+||+||+||||||.++ .+..+|+.+.|.||.. |||++|+....
T Consensus 330 ~~LP~vLiihLKRF~~~-~~~~~K~~t~V~FP~~~LDm~~y~~~~~---------------------------------- 374 (440)
T cd02669 330 SRLPKYLIFHIKRFSKN-NFFKEKNPTIVNFPIKNLDLSDYVHFDK---------------------------------- 374 (440)
T ss_pred eeCCcEEEEEEecccCC-CCccccCCCEEECCCCccchhhhhCccc----------------------------------
Confidence 99999999999999998 4667899999999996 89999975200
Q ss_pred CCChHHHHHHHHHhCCccHHHHHHHhhhcCCCCCCCCCCccccccccCChhhhhhhhcCCCCHHHHHHHHHHcCCChhhh
Q 003583 634 GFNHLHCEKAAVNTSNAGVEEAMNWLLSHMDDPDIDMPLSQETQCAAIDQSKVETLLSFGFSEEVARNALKASGGDIEKA 713 (809)
Q Consensus 634 gf~~~~~~~a~~~t~n~~~e~a~~wl~~h~dd~d~~~p~~~~~~~~~~~~~~~~~l~~mgf~~~~a~~aL~~~~~~~~~a 713 (809)
T Consensus 375 -------------------------------------------------------------------------------- 374 (440)
T cd02669 375 -------------------------------------------------------------------------------- 374 (440)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred ccccccCCCCCCCcccccccCCCCCCCCCCCCCCCCceEEEEEEEeeeccCCCccEEEEEEee--CCcEEEEeCceeecc
Q 003583 714 TDWIFNNPDASTSSDMDAATSSTAQTPADAGLPDGGGKYRLFGIVSHIGTSTQCGHYVAHILK--DGRWAIFNDNKVGAS 791 (809)
Q Consensus 714 ~dwlfs~~dd~~~~~~~~~~~~~~~~~~~~~~~~~~~~Y~L~avI~H~G~s~~sGHYva~ikk--~~~W~~fND~kV~~~ 791 (809)
.....+.+|+|+|||+|.|+.+++|||+||||+ +|+||.|||++|+.+
T Consensus 375 ------------------------------~~~~~~~~Y~L~avI~H~G~~~~sGHY~a~v~~~~~~~W~~fdD~~V~~v 424 (440)
T cd02669 375 ------------------------------PSLNLSTKYNLVANIVHEGTPQEDGTWRVQLRHKSTNKWFEIQDLNVKEV 424 (440)
T ss_pred ------------------------------cccCCCceEEEEEEEEEeccCCCCeeEEEEEEcCCCCeEEEEECCeeeEc
Confidence 000124689999999999996699999999996 689999999999987
Q ss_pred c--CCCCCceEEEEEE
Q 003583 792 V--DPPKEMGYLYFFE 805 (809)
Q Consensus 792 ~--~~~~~~~Yi~~Y~ 805 (809)
. ......|||+||+
T Consensus 425 ~~~~v~~~eaYll~Y~ 440 (440)
T cd02669 425 LPQLIFLSESYIQIWE 440 (440)
T ss_pred CHHHhccCCceEEEeC
Confidence 4 4678999999996
No 4
>cd02658 Peptidase_C19B A subfamily of Peptidase C19. Peptidase C19 contains ubiquitinyl hydrolases. They are intracellular peptidases that remove ubiquitin molecules from polyubiquinated peptides by cleavage of isopeptide bonds. They hydrolyze bonds involving the carboxyl group of the C-terminal Gly residue of ubiquitin. The purpose of the de-ubiquitination is thought to be editing of the ubiquitin conjugates, which could rescue them from degradation, as well as recycling of the ubiquitin. The ubiquitin/proteasome system is responsible for most protein turnover in the mammalian cell, and with over 50 members, family C19 is one of the largest families of peptidases in the human genome.
Probab=100.00 E-value=1.2e-57 Score=497.23 Aligned_cols=304 Identities=53% Similarity=0.886 Sum_probs=257.9
Q ss_pred ccccCCChhhHHHHHHHHhchHHHHHHHhcCCchhhhhccCCCCCCccHHHHHHHHHHHHhcCCCCCChhhhhhhhhccc
Q 003583 313 GLVNLGNSCYLAATMQVMFSTHAFCTRYYTQEPLKAAFEAAPADPTVDLNMQLTKLAHGLLSGKYSVPAQEKDAAANAAT 392 (809)
Q Consensus 313 GL~NLGNTCYmNSVLQ~L~~ip~f~~~~l~~~~~~~~~~~~~~~p~~~l~~ql~kL~~~l~sg~ys~~~~~~~~~~~~~~ 392 (809)
||.|+|||||||||||+|+++|+||++++... +.+......|..++.++|++|+.+|++++|+.+.... .
T Consensus 1 GL~NlGNTCY~NsvLQ~L~~~~~f~~~l~~~~---~~~~~~~~~~~~~~~~~l~~l~~~l~~~~~~~~~~~~-------~ 70 (311)
T cd02658 1 GLRNLGNSCYLNSVLQVLFSIPSFQWRYDDLE---NKFPSDVVDPANDLNCQLIKLADGLLSGRYSKPASLK-------S 70 (311)
T ss_pred CcccCCcchHHHHHHHHHHCCHHHHHHHhhhc---cccCCCcCCccccHHHHHHHHHHHhcCCCcCCCcccc-------c
Confidence 89999999999999999999999999997632 1122234467889999999999999999887543210 0
Q ss_pred cCCCCCCCCChHHHHHHHHhhCCCCCCcccCCHHHHHHHHHHHHHHHhCCCCCCCCcCccceEEEEEEEe-cCCCEeeee
Q 003583 393 TTDTKQEGIPPRMFKAVIAASHPEFSSMRQQDALEFFLHFVDQVERVHSGKPEVDPTKSFKFGIEERISC-PSGKVAYNR 471 (809)
Q Consensus 393 ~~~~~~~~I~P~~f~~~i~~~~~~F~~~~QQDA~EFl~~LLd~L~~~~~~~~~~~i~~~F~g~l~~~i~C-~C~~vs~~~ 471 (809)
.....+.+|+|..|+.+++..+|.|.+++||||+|||++||+.|+++........+.++|+|.++++++| .|+.++++.
T Consensus 71 ~~~~~~~~i~p~~~~~~l~~~~~~f~~~~QqDa~Efl~~ll~~l~~~~~~~~~~~~~~~f~~~~~~~i~C~~C~~~s~~~ 150 (311)
T cd02658 71 ENDPYQVGIKPSMFKALIGKGHPEFSTMRQQDALEFLLHLIDKLDRESFKNLGLNPNDLFKFMIEDRLECLSCKKVKYTS 150 (311)
T ss_pred cccccccccCcHHHHHHHhccChhhcccccccHHHHHHHHHHHHHHhhcccccCCchhheEEEeeEEEEcCCCCCEEEee
Confidence 1123577899999999999999999999999999999999999999986555567889999999999999 999999999
Q ss_pred ecCeeeeeccCCccccchHHHHHHHHHHHhhhccCCCCCcccccCCCccHHHHHhhhcCCcccCcccCCCCCCccceeEE
Q 003583 472 RLDYILSLGIPLDEATNKEELAAFQKLKMERISEGKDVTNEEIVRPRVPLEACLSTFSAPEELPDFYSTALKAKTTATKS 551 (809)
Q Consensus 472 e~~~~LsL~ip~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~sL~~cL~~f~~~E~le~~~C~~C~~~~~a~k~ 551 (809)
+++.+|+|+||....... .......+.++|++||+.|+.+|.++ ++|+.|++++.+.|+
T Consensus 151 e~~~~lsL~l~~~~~~~~--------------------~~~~~~~~~~sl~~~L~~~~~~e~i~-~~C~~C~~~~~a~k~ 209 (311)
T cd02658 151 ELSEILSLPVPKDEATEK--------------------EEGELVYEPVPLEDCLKAYFAPETIE-DFCSTCKEKTTATKT 209 (311)
T ss_pred cceeEEeeeccccccccc--------------------ccccccCCCCCHHHHHHHHcCccccc-ccccCCCCcccEEEE
Confidence 999999999987542110 00011234579999999999999999 789999999999999
Q ss_pred eeccccCceeEEEEeeEEEccCceeeeceeeecCCCccccccccCCCCCCCCCCCCCCCCCCcccCCCCCCcHHHHHHHH
Q 003583 552 AGLTSFPDYLVLHMRKFVMEAGWVPKKLDVYIDVPDIIDISHMRSKGLQPGEELLPEGGPEDEVQSNKPVANKDIVSQLV 631 (809)
Q Consensus 552 ~~i~~lP~vLiI~LkRF~~~~~~~~~Ki~~~V~fP~~LDL~~~~~~~~~~~e~~l~~~~~~~~~~~~~~~~~~~~~~ql~ 631 (809)
.+|.+||+||+|||+||.++.+|.++|++..|.||..| .
T Consensus 210 ~~i~~lP~vLii~LkRF~~~~~~~~~Ki~~~v~~p~~l--~--------------------------------------- 248 (311)
T cd02658 210 TGFKTFPDYLVINMKRFQLLENWVPKKLDVPIDVPEEL--G--------------------------------------- 248 (311)
T ss_pred EEeecCCceEEEEeEEEEecCCCceEeeccccccCCcC--C---------------------------------------
Confidence 99999999999999999997689999999999998655 0
Q ss_pred hcCCChHHHHHHHHHhCCccHHHHHHHhhhcCCCCCCCCCCccccccccCChhhhhhhhcCCCCHHHHHHHHHHcCCChh
Q 003583 632 SMGFNHLHCEKAAVNTSNAGVEEAMNWLLSHMDDPDIDMPLSQETQCAAIDQSKVETLLSFGFSEEVARNALKASGGDIE 711 (809)
Q Consensus 632 ~mgf~~~~~~~a~~~t~n~~~e~a~~wl~~h~dd~d~~~p~~~~~~~~~~~~~~~~~l~~mgf~~~~a~~aL~~~~~~~~ 711 (809)
T Consensus 249 -------------------------------------------------------------------------------- 248 (311)
T cd02658 249 -------------------------------------------------------------------------------- 248 (311)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred hhccccccCCCCCCCcccccccCCCCCCCCCCCCCCCCceEEEEEEEeeeccCCCccEEEEEEeeC----CcEEEEeCce
Q 003583 712 KATDWIFNNPDASTSSDMDAATSSTAQTPADAGLPDGGGKYRLFGIVSHIGTSTQCGHYVAHILKD----GRWAIFNDNK 787 (809)
Q Consensus 712 ~a~dwlfs~~dd~~~~~~~~~~~~~~~~~~~~~~~~~~~~Y~L~avI~H~G~s~~sGHYva~ikk~----~~W~~fND~k 787 (809)
+.+|+|+|||+|.|.++++||||||+|.. ++||+|||+.
T Consensus 249 -------------------------------------~~~Y~L~~vI~H~G~~~~~GHY~~~vk~~~~~~~~W~~fnD~~ 291 (311)
T cd02658 249 -------------------------------------PGKYELIAFISHKGTSVHSGHYVAHIKKEIDGEGKWVLFNDEK 291 (311)
T ss_pred -------------------------------------CCcEEEEEEEEccCCCCCCcceEEEEeCCCCCCCCEEEecCce
Confidence 13599999999999989999999999986 8999999999
Q ss_pred eecccC--CCCCceEEEEEE
Q 003583 788 VGASVD--PPKEMGYLYFFE 805 (809)
Q Consensus 788 V~~~~~--~~~~~~Yi~~Y~ 805 (809)
|+.+.+ .....||||||+
T Consensus 292 V~~~~~~~~~~~~~YilfY~ 311 (311)
T cd02658 292 VVASQDPPEMKKLGYIYFYQ 311 (311)
T ss_pred eEECCcccccCCcceEEEEC
Confidence 998754 457899999996
No 5
>cd02660 Peptidase_C19D A subfamily of Peptidase C19. Peptidase C19 contains ubiquitinyl hydrolases. They are intracellular peptidases that remove ubiquitin molecules from polyubiquinated peptides by cleavage of isopeptide bonds. They hydrolyze bonds involving the carboxyl group of the C-terminal Gly residue of ubiquitin. The purpose of the de-ubiquitination is thought to be editing of the ubiquitin conjugates, which could rescue them from degradation, as well as recycling of the ubiquitin. The ubiquitin/proteasome system is responsible for most protein turnover in the mammalian cell, and with over 50 members, family C19 is one of the largest families of peptidases in the human genome.
Probab=100.00 E-value=9.3e-55 Score=478.15 Aligned_cols=313 Identities=22% Similarity=0.396 Sum_probs=257.4
Q ss_pred cccccCCChhhHHHHHHHHhchHHHHHHHhcCCchhhhhccCCCCCCccHHHHHHHHHHHHhcCCCCCChhhhhhhhhcc
Q 003583 312 TGLVNLGNSCYLAATMQVMFSTHAFCTRYYTQEPLKAAFEAAPADPTVDLNMQLTKLAHGLLSGKYSVPAQEKDAAANAA 391 (809)
Q Consensus 312 ~GL~NLGNTCYmNSVLQ~L~~ip~f~~~~l~~~~~~~~~~~~~~~p~~~l~~ql~kL~~~l~sg~ys~~~~~~~~~~~~~ 391 (809)
+||.|+|||||||||||+|+++|+|+++++...+.. .+....+..++.++|.+|+..|+..
T Consensus 1 rGl~N~gntCY~NsvLQ~L~~~~~f~~~ll~~~~~~---~~~~~~~~~~~~~~l~~l~~~l~~~---------------- 61 (328)
T cd02660 1 RGLINLGATCFMNVILQALLHNPLLRNYFLSDRHSC---TCLSCSPNSCLSCAMDEIFQEFYYS---------------- 61 (328)
T ss_pred CCccccCcchHHHHHHHHHhcCHHHHHHHhcCcccc---ccccCCccccHHHHHHHHHHHHhcC----------------
Confidence 699999999999999999999999999998753211 0112346779999999999999532
Q ss_pred ccCCCCCCCCChHHHHHHHHhhCCCCCCcccCCHHHHHHHHHHHHHHHhCCCC---------CCCCcCccceEEEEEEEe
Q 003583 392 TTTDTKQEGIPPRMFKAVIAASHPEFSSMRQQDALEFFLHFVDQVERVHSGKP---------EVDPTKSFKFGIEERISC 462 (809)
Q Consensus 392 ~~~~~~~~~I~P~~f~~~i~~~~~~F~~~~QQDA~EFl~~LLd~L~~~~~~~~---------~~~i~~~F~g~l~~~i~C 462 (809)
.....+.|..|+..+++..+.|.++.||||+|||.+||+.|+++..... .+++.++|+|.+.++++|
T Consensus 62 ----~~~~~~~~~~~l~~~~~~~~~f~~~~QqDa~Efl~~ll~~l~~~~~~~~~~~~~~~~~~~~i~~~F~g~~~~~~~C 137 (328)
T cd02660 62 ----GDRSPYGPINLLYLSWKHSRNLAGYSQQDAHEFFQFLLDQLHTHYGGDKNEANDESHCNCIIHQTFSGSLQSSVTC 137 (328)
T ss_pred ----CCCCCcCHHHHHHHHHhhchhhcccccccHHHHHHHHHHHHHHHhhcccccccccccCCceeEEecccEEEeeeEc
Confidence 2456799999999999999999999999999999999999999875432 246789999999999999
Q ss_pred -cCCCEeeeeecCeeeeeccCCccccchHHHHHHHHHHHhhhccCCCCCcccccCCCccHHHHHhhhcCCcccCc--ccC
Q 003583 463 -PSGKVAYNRRLDYILSLGIPLDEATNKEELAAFQKLKMERISEGKDVTNEEIVRPRVPLEACLSTFSAPEELPD--FYS 539 (809)
Q Consensus 463 -~C~~vs~~~e~~~~LsL~ip~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~sL~~cL~~f~~~E~le~--~~C 539 (809)
.|++++.+.++++.|+|+||....... ...........+|++||+.|+.+|.+++ |+|
T Consensus 138 ~~C~~~s~~~e~f~~lsl~i~~~~~~~~-------------------~~~~~~~~~~~sl~~~L~~~~~~e~~~~~~~~C 198 (328)
T cd02660 138 QRCGGVSTTVDPFLDLSLDIPNKSTPSW-------------------ALGESGVSGTPTLSDCLDRFTRPEKLGDFAYKC 198 (328)
T ss_pred CCCCCccceecccceeeeeccccccccc-------------------cccccCCCCCCCHHHHHHHhcCccccCCCCccC
Confidence 999999999999999999987542110 0000112345799999999999999986 589
Q ss_pred CCCCCccceeEEeeccccCceeEEEEeeEEEccCceeeeceeeecCCCccccccccCCCCCCCCCCCCCCCCCCcccCCC
Q 003583 540 TALKAKTTATKSAGLTSFPDYLVLHMRKFVMEAGWVPKKLDVYIDVPDIIDISHMRSKGLQPGEELLPEGGPEDEVQSNK 619 (809)
Q Consensus 540 ~~C~~~~~a~k~~~i~~lP~vLiI~LkRF~~~~~~~~~Ki~~~V~fP~~LDL~~~~~~~~~~~e~~l~~~~~~~~~~~~~ 619 (809)
++|++++.+.|+..|.++|+||+|||+||.++..|...|+..+|.||.+|||.+|+..+... .+.
T Consensus 199 ~~C~~~~~~~~~~~i~~lP~~Lii~lkRf~~~~~~~~~K~~~~v~fp~~Ldl~~~~~~~~~~----~~~----------- 263 (328)
T cd02660 199 SGCGSTQEATKQLSIKKLPPVLCFQLKRFEHSLNKTSRKIDTYVQFPLELNMTPYTSSSIGD----TQD----------- 263 (328)
T ss_pred CCCCCccceEEEEEecCCCceeEEEEEeEEecCCCCCcCCCcEEeCCCEechhhhccccccc----ccc-----------
Confidence 99999999999999999999999999999998658889999999999999999987653100 000
Q ss_pred CCCcHHHHHHHHhcCCChHHHHHHHHHhCCccHHHHHHHhhhcCCCCCCCCCCccccccccCChhhhhhhhcCCCCHHHH
Q 003583 620 PVANKDIVSQLVSMGFNHLHCEKAAVNTSNAGVEEAMNWLLSHMDDPDIDMPLSQETQCAAIDQSKVETLLSFGFSEEVA 699 (809)
Q Consensus 620 ~~~~~~~~~ql~~mgf~~~~~~~a~~~t~n~~~e~a~~wl~~h~dd~d~~~p~~~~~~~~~~~~~~~~~l~~mgf~~~~a 699 (809)
T Consensus 264 -------------------------------------------------------------------------------- 263 (328)
T cd02660 264 -------------------------------------------------------------------------------- 263 (328)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred HHHHHHcCCChhhhccccccCCCCCCCcccccccCCCCCCCCCCCCCCCCceEEEEEEEeeeccCCCccEEEEEEeeC-C
Q 003583 700 RNALKASGGDIEKATDWIFNNPDASTSSDMDAATSSTAQTPADAGLPDGGGKYRLFGIVSHIGTSTQCGHYVAHILKD-G 778 (809)
Q Consensus 700 ~~aL~~~~~~~~~a~dwlfs~~dd~~~~~~~~~~~~~~~~~~~~~~~~~~~~Y~L~avI~H~G~s~~sGHYva~ikk~-~ 778 (809)
.....++.+|+|+|||+|.|+ +.+|||+||+|.. +
T Consensus 264 -------------------------------------------~~~~~~~~~Y~L~avi~H~G~-~~~GHY~~~~~~~~~ 299 (328)
T cd02660 264 -------------------------------------------SNSLDPDYTYDLFAVVVHKGT-LDTGHYTAYCRQGDG 299 (328)
T ss_pred -------------------------------------------cccCCCCceEEEEEEEEeecc-CCCCcEEEEEECCCC
Confidence 000123578999999999997 7899999999986 9
Q ss_pred cEEEEeCceeeccc--CCCCCceEEEEEE
Q 003583 779 RWAIFNDNKVGASV--DPPKEMGYLYFFE 805 (809)
Q Consensus 779 ~W~~fND~kV~~~~--~~~~~~~Yi~~Y~ 805 (809)
+|++|||+.|+.+. +.....||||||.
T Consensus 300 ~W~~~nD~~V~~~~~~~v~~~~ayil~Y~ 328 (328)
T cd02660 300 QWFKFDDAMITRVSEEEVLKSQAYLLFYH 328 (328)
T ss_pred cEEEEECCeeEECCHHHhcCCCcEEEEeC
Confidence 99999999999874 3667899999993
No 6
>cd02663 Peptidase_C19G A subfamily of Peptidase C19. Peptidase C19 contains ubiquitinyl hydrolases. They are intracellular peptidases that remove ubiquitin molecules from polyubiquinated peptides by cleavage of isopeptide bonds. They hydrolyze bonds involving the carboxyl group of the C-terminal Gly residue of ubiquitin. The purpose of the de-ubiquitination is thought to be editing of the ubiquitin conjugates, which could rescue them from degradation, as well as recycling of the ubiquitin. The ubiquitin/proteasome system is responsible for most protein turnover in the mammalian cell, and with over 50 members, family C19 is one of the largest families of peptidases in the human genome.
Probab=100.00 E-value=3.6e-55 Score=475.05 Aligned_cols=267 Identities=24% Similarity=0.426 Sum_probs=233.0
Q ss_pred ccccCCChhhHHHHHHHHhchHHHHHHHhcCCchhhhhccCCCCCCccHHHHHHHHHHHHhcCCCCCChhhhhhhhhccc
Q 003583 313 GLVNLGNSCYLAATMQVMFSTHAFCTRYYTQEPLKAAFEAAPADPTVDLNMQLTKLAHGLLSGKYSVPAQEKDAAANAAT 392 (809)
Q Consensus 313 GL~NLGNTCYmNSVLQ~L~~ip~f~~~~l~~~~~~~~~~~~~~~p~~~l~~ql~kL~~~l~sg~ys~~~~~~~~~~~~~~ 392 (809)
||.|+|||||||||||+|++ .++.++|+.|+..|+...
T Consensus 1 Gl~NlGnTCY~NsvLQ~L~~--------------------------~~l~~~L~~lf~~l~~~~---------------- 38 (300)
T cd02663 1 GLENFGNTCYCNSVLQALYF--------------------------ENLLTCLKDLFESISEQK---------------- 38 (300)
T ss_pred CccCCCcceehhHHHHHhhh--------------------------HHHHHHHHHHHHHHHhCC----------------
Confidence 89999999999999999987 247788999999998741
Q ss_pred cCCCCCCCCChHHHHHHHHhhCCCCCCcccCCHHHHHHHHHHHHHHHhCCC------------------CCCCCcCccce
Q 003583 393 TTDTKQEGIPPRMFKAVIAASHPEFSSMRQQDALEFFLHFVDQVERVHSGK------------------PEVDPTKSFKF 454 (809)
Q Consensus 393 ~~~~~~~~I~P~~f~~~i~~~~~~F~~~~QQDA~EFl~~LLd~L~~~~~~~------------------~~~~i~~~F~g 454 (809)
.....|+|..|++.+++.+|.|.+++||||+|||++|||.|+++++.. ..+.+.++|+|
T Consensus 39 ---~~~~~isP~~f~~~l~~~~~~f~~~~QqDA~EFl~~lLd~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~i~~~F~G 115 (300)
T cd02663 39 ---KRTGVISPKKFITRLKRENELFDNYMHQDAHEFLNFLLNEIAEILDAERKAEKANRKLNNNNNAEPQPTWVHEIFQG 115 (300)
T ss_pred ---CCCeeECHHHHHHHHHhhcCCCCCCccccHHHHHHHHHHHHHHHHHHHhhcccccccccccccCCcCCCChhhhCce
Confidence 234579999999999999999999999999999999999999987521 13467899999
Q ss_pred EEEEEEEe-cCCCEeeeeecCeeeeeccCCccccchHHHHHHHHHHHhhhccCCCCCcccccCCCccHHHHHhhhcCCcc
Q 003583 455 GIEERISC-PSGKVAYNRRLDYILSLGIPLDEATNKEELAAFQKLKMERISEGKDVTNEEIVRPRVPLEACLSTFSAPEE 533 (809)
Q Consensus 455 ~l~~~i~C-~C~~vs~~~e~~~~LsL~ip~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~sL~~cL~~f~~~E~ 533 (809)
++.++++| .|+.++.+.++|++|+|+||.. .+|++||+.|+++|.
T Consensus 116 ~~~~~~~C~~C~~~s~~~e~f~~Lsl~i~~~----------------------------------~sl~~~L~~~~~~E~ 161 (300)
T cd02663 116 ILTNETRCLTCETVSSRDETFLDLSIDVEQN----------------------------------TSITSCLRQFSATET 161 (300)
T ss_pred EEEeeEEeCCCCCCccccceeEEeccCCCCc----------------------------------CCHHHHHHHhhcccc
Confidence 99999999 9999999999999999999752 589999999999999
Q ss_pred cCc---ccCCCCCCccceeEEeeccccCceeEEEEeeEEEccCc-eeeeceeeecCCCccccccccCCCCCCCCCCCCCC
Q 003583 534 LPD---FYSTALKAKTTATKSAGLTSFPDYLVLHMRKFVMEAGW-VPKKLDVYIDVPDIIDISHMRSKGLQPGEELLPEG 609 (809)
Q Consensus 534 le~---~~C~~C~~~~~a~k~~~i~~lP~vLiI~LkRF~~~~~~-~~~Ki~~~V~fP~~LDL~~~~~~~~~~~e~~l~~~ 609 (809)
+++ |.|++|++++.|+|+..|.++|+||+|||+||.++..+ ...|+..+|.||.+|||.++....
T Consensus 162 l~~~~~~~C~~C~~~~~a~k~~~i~~lP~vLii~LkRF~~~~~~~~~~Ki~~~v~fp~~L~~~~~~~~~----------- 230 (300)
T cd02663 162 LCGRNKFYCDECCSLQEAEKRMKIKKLPKILALHLKRFKYDEQLNRYIKLFYRVVFPLELRLFNTTDDA----------- 230 (300)
T ss_pred cCCCCcEECCCCCCceeEEEEEEeccCCceeEEEEEeEEeecccCCceecCceEecCcEEecccccccc-----------
Confidence 975 89999999999999999999999999999999998543 578999999999999997542100
Q ss_pred CCCCcccCCCCCCcHHHHHHHHhcCCChHHHHHHHHHhCCccHHHHHHHhhhcCCCCCCCCCCccccccccCChhhhhhh
Q 003583 610 GPEDEVQSNKPVANKDIVSQLVSMGFNHLHCEKAAVNTSNAGVEEAMNWLLSHMDDPDIDMPLSQETQCAAIDQSKVETL 689 (809)
Q Consensus 610 ~~~~~~~~~~~~~~~~~~~ql~~mgf~~~~~~~a~~~t~n~~~e~a~~wl~~h~dd~d~~~p~~~~~~~~~~~~~~~~~l 689 (809)
T Consensus 231 -------------------------------------------------------------------------------- 230 (300)
T cd02663 231 -------------------------------------------------------------------------------- 230 (300)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred hcCCCCHHHHHHHHHHcCCChhhhccccccCCCCCCCcccccccCCCCCCCCCCCCCCCCceEEEEEEEeeeccCCCccE
Q 003583 690 LSFGFSEEVARNALKASGGDIEKATDWIFNNPDASTSSDMDAATSSTAQTPADAGLPDGGGKYRLFGIVSHIGTSTQCGH 769 (809)
Q Consensus 690 ~~mgf~~~~a~~aL~~~~~~~~~a~dwlfs~~dd~~~~~~~~~~~~~~~~~~~~~~~~~~~~Y~L~avI~H~G~s~~sGH 769 (809)
......|+|+|||+|.|+++++||
T Consensus 231 --------------------------------------------------------~~~~~~Y~L~~vi~H~G~~~~~GH 254 (300)
T cd02663 231 --------------------------------------------------------ENPDRLYELVAVVVHIGGGPNHGH 254 (300)
T ss_pred --------------------------------------------------------CCCCeEEEEEEEEEEecCCCCCCc
Confidence 011357999999999999899999
Q ss_pred EEEEEeeCCcEEEEeCceeecccC----------CCCCceEEEEEE
Q 003583 770 YVAHILKDGRWAIFNDNKVGASVD----------PPKEMGYLYFFE 805 (809)
Q Consensus 770 Yva~ikk~~~W~~fND~kV~~~~~----------~~~~~~Yi~~Y~ 805 (809)
|+||+|.+++|+.|||+.|+.+.. .....||||||+
T Consensus 255 Y~a~~k~~~~W~~fdD~~V~~~~~~~v~~~~~~~~~~~~aYiLfY~ 300 (300)
T cd02663 255 YVSIVKSHGGWLLFDDETVEKIDENAVEEFFGDSPNQATAYVLFYQ 300 (300)
T ss_pred eEEEEECCCcEEEEcCCceEEcCHHHHHHhcCCCCCCCceEEEEeC
Confidence 999999999999999999997642 236889999996
No 7
>KOG1865 consensus Ubiquitin carboxyl-terminal hydrolase [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=4.3e-55 Score=477.27 Aligned_cols=288 Identities=24% Similarity=0.385 Sum_probs=252.8
Q ss_pred cccccccCCChhhHHHHHHHHhchHHHHHHHhcCCchhhhhccCCCCCCccHHHHHHHHHHHHhcCCCCCChhhhhhhhh
Q 003583 310 GYTGLVNLGNSCYLAATMQVMFSTHAFCTRYYTQEPLKAAFEAAPADPTVDLNMQLTKLAHGLLSGKYSVPAQEKDAAAN 389 (809)
Q Consensus 310 g~~GL~NLGNTCYmNSVLQ~L~~ip~f~~~~l~~~~~~~~~~~~~~~p~~~l~~ql~kL~~~l~sg~ys~~~~~~~~~~~ 389 (809)
-..||.|+|||||+|||||||.++|++.+|++...| ...+.....|+.|.|...+..-+..
T Consensus 107 ~~~GL~NlGNtCfaNsvlQcLt~T~PLv~yLls~~h-----s~~C~~~~~C~lc~~q~hi~~A~~~-------------- 167 (545)
T KOG1865|consen 107 VGAGLQNLGNTCFANSVLQCLTYTPPLVNYLLSREH-----SRSCHRAKFCMLCTFQAHITRALHN-------------- 167 (545)
T ss_pred CCcceecCCccHHHHHHHHHhcccHHHHHHHHHhhh-----hhhccccCeeeehHHHHHHHHHhcC--------------
Confidence 457999999999999999999999999999996542 2233357789999999987655442
Q ss_pred ccccCCCCCCCCChHHHHHHHHhhCCCCCCcccCCHHHHHHHHHHHHHHHhCCC---------CCCCCcCccceEEEEEE
Q 003583 390 AATTTDTKQEGIPPRMFKAVIAASHPEFSSMRQQDALEFFLHFVDQVERVHSGK---------PEVDPTKSFKFGIEERI 460 (809)
Q Consensus 390 ~~~~~~~~~~~I~P~~f~~~i~~~~~~F~~~~QQDA~EFl~~LLd~L~~~~~~~---------~~~~i~~~F~g~l~~~i 460 (809)
...+|+|..|+.-+......|..++|.||||||++++|.|+...-.. ..+.++++|+|.++++|
T Consensus 168 -------~g~pisP~~i~s~L~~I~~~f~~grQEDAHEFLr~~vd~mqk~cL~g~~~~~~~sq~ttlv~~iFGG~LrS~v 240 (545)
T KOG1865|consen 168 -------PGHPISPSQILSNLRNISAHFGRGRQEDAHEFLRFTVDAMQKACLPGHKQVDPRSQDTTLVHQIFGGYLRSQI 240 (545)
T ss_pred -------CCCccChHHHHHhhhhhcccccCCchhhHHHHHHHHHHHHHHhhcCCCccCCcccccceehhhhhccchhhce
Confidence 34599999999999999999999999999999999999999877311 11578899999999999
Q ss_pred Ee-cCCCEeeeeecCeeeeeccCCccccchHHHHHHHHHHHhhhccCCCCCcccccCCCccHHHHHhhhcCCcccCc---
Q 003583 461 SC-PSGKVAYNRRLDYILSLGIPLDEATNKEELAAFQKLKMERISEGKDVTNEEIVRPRVPLEACLSTFSAPEELPD--- 536 (809)
Q Consensus 461 ~C-~C~~vs~~~e~~~~LsL~ip~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~sL~~cL~~f~~~E~le~--- 536 (809)
+| .|++++.++|+..+|+|.|- +. -+|+++|+.|+.+|.++|
T Consensus 241 kC~~C~~vS~tyE~~~dltvei~-d~---------------------------------~sl~~AL~qFt~~E~L~gen~ 286 (545)
T KOG1865|consen 241 KCLHCKGVSDTYEPYLDLTLEIQ-DA---------------------------------SSLQQALEQFTKPEKLDGENA 286 (545)
T ss_pred ecccCCCcccccccccceEEEec-cc---------------------------------hhHHHHHHHhhhHHhhCCccc
Confidence 99 99999999999999999995 21 489999999999999975
Q ss_pred ccCCCCCCccceeEEeeccccCceeEEEEeeEEEccCceeeeceeeecCCCccccccccCCCCCCCCCCCCCCCCCCccc
Q 003583 537 FYSTALKAKTTATKSAGLTSFPDYLVLHMRKFVMEAGWVPKKLDVYIDVPDIIDISHMRSKGLQPGEELLPEGGPEDEVQ 616 (809)
Q Consensus 537 ~~C~~C~~~~~a~k~~~i~~lP~vLiI~LkRF~~~~~~~~~Ki~~~V~fP~~LDL~~~~~~~~~~~e~~l~~~~~~~~~~ 616 (809)
|.|.+|+++..|.|+.+|.+.|+||+||||||.. ....||+.+|.||+.|||.||++. ++
T Consensus 287 Y~C~~Ck~~v~A~K~lti~raPnVLTi~LKRF~~---~~~gKI~K~I~fPE~LDl~PyMS~---~~-------------- 346 (545)
T KOG1865|consen 287 YHCGRCKQKVPASKQLTIHRAPNVLTLHLKRFSN---GTGGKISKPVSFPETLDLQPYMSQ---PN-------------- 346 (545)
T ss_pred cccchhhhhCcccceeeeecCCceEEEeeehhcc---CcccccccccCCcccccccccccC---CC--------------
Confidence 9999999999999999999999999999999996 346799999999999999999873 11
Q ss_pred CCCCCCcHHHHHHHHhcCCChHHHHHHHHHhCCccHHHHHHHhhhcCCCCCCCCCCccccccccCChhhhhhhhcCCCCH
Q 003583 617 SNKPVANKDIVSQLVSMGFNHLHCEKAAVNTSNAGVEEAMNWLLSHMDDPDIDMPLSQETQCAAIDQSKVETLLSFGFSE 696 (809)
Q Consensus 617 ~~~~~~~~~~~~ql~~mgf~~~~~~~a~~~t~n~~~e~a~~wl~~h~dd~d~~~p~~~~~~~~~~~~~~~~~l~~mgf~~ 696 (809)
T Consensus 347 -------------------------------------------------------------------------------- 346 (545)
T KOG1865|consen 347 -------------------------------------------------------------------------------- 346 (545)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred HHHHHHHHHcCCChhhhccccccCCCCCCCcccccccCCCCCCCCCCCCCCCCceEEEEEEEeeeccCCCccEEEEEEee
Q 003583 697 EVARNALKASGGDIEKATDWIFNNPDASTSSDMDAATSSTAQTPADAGLPDGGGKYRLFGIVSHIGTSTQCGHYVAHILK 776 (809)
Q Consensus 697 ~~a~~aL~~~~~~~~~a~dwlfs~~dd~~~~~~~~~~~~~~~~~~~~~~~~~~~~Y~L~avI~H~G~s~~sGHYva~ikk 776 (809)
+++..|.|+|||+|.|.+.++|||+||||.
T Consensus 347 --------------------------------------------------e~s~~Y~LYavlVH~g~~~~~GHY~cYvks 376 (545)
T KOG1865|consen 347 --------------------------------------------------EGSTVYKLYAVLVHLGTSCHSGHYFCYVKS 376 (545)
T ss_pred --------------------------------------------------CCCceEEEEEEEEeccccccCCceEEEEEc
Confidence 125679999999999999999999999997
Q ss_pred -CCcEEEEeCceeecccC--CCCCceEEEEEEec
Q 003583 777 -DGRWAIFNDNKVGASVD--PPKEMGYLYFFERL 807 (809)
Q Consensus 777 -~~~W~~fND~kV~~~~~--~~~~~~Yi~~Y~R~ 807 (809)
+|.||.|||.+|+.++. +....||||||.|.
T Consensus 377 ~~g~Wy~~DDS~V~~~~~~~VLsq~AYmLfY~R~ 410 (545)
T KOG1865|consen 377 QNGQWYKMDDSEVTQSSIESVLSQQAYILFYARK 410 (545)
T ss_pred CCCceEEccCceeeeccccceecccceEEEEEee
Confidence 78999999999997754 67888999999995
No 8
>cd02668 Peptidase_C19L A subfamily of Peptidase C19. Peptidase C19 contains ubiquitinyl hydrolases. They are intracellular peptidases that remove ubiquitin molecules from polyubiquinated peptides by cleavage of isopeptide bonds. They hydrolyze bonds involving the carboxyl group of the C-terminal Gly residue of ubiquitin. The purpose of the de-ubiquitination is thought to be editing of the ubiquitin conjugates, which could rescue them from degradation, as well as recycling of the ubiquitin. The ubiquitin/proteasome system is responsible for most protein turnover in the mammalian cell, and with over 50 members, family C19 is one of the largest families of peptidases in the human genome.
Probab=100.00 E-value=4e-54 Score=471.90 Aligned_cols=223 Identities=26% Similarity=0.373 Sum_probs=191.0
Q ss_pred ccccCCChhhHHHHHHHHhchHHHHHHHhcCCchhhhh-ccCC---CCCCccHHHHHHHHHHHHhcCCCCCChhhhhhhh
Q 003583 313 GLVNLGNSCYLAATMQVMFSTHAFCTRYYTQEPLKAAF-EAAP---ADPTVDLNMQLTKLAHGLLSGKYSVPAQEKDAAA 388 (809)
Q Consensus 313 GL~NLGNTCYmNSVLQ~L~~ip~f~~~~l~~~~~~~~~-~~~~---~~p~~~l~~ql~kL~~~l~sg~ys~~~~~~~~~~ 388 (809)
||.|+||||||||+||+|+++|+|+++++......... .+.+ .....++.++|.+|+..|+++
T Consensus 1 GL~NlGnTCY~NsvLQ~L~~~~~fr~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~lf~~l~~~------------- 67 (324)
T cd02668 1 GLKNLGATCYVNSFLQLWFMNLEFRKAVYECNSTEDAELKNMPPDKPHEPQTIIDQLQLIFAQLQFG------------- 67 (324)
T ss_pred CcccCCceeHHHHHHHHHHCCHHHHHHHHccCcccccccccccccCCcccchHHHHHHHHHHHHHhC-------------
Confidence 89999999999999999999999999998643211100 0000 012357999999999999986
Q ss_pred hccccCCCCCCCCChHHHHHHHHhhCCCCCCcccCCHHHHHHHHHHHHHHHhCCC----CCCCCcCccceEEEEEEEe-c
Q 003583 389 NAATTTDTKQEGIPPRMFKAVIAASHPEFSSMRQQDALEFFLHFVDQVERVHSGK----PEVDPTKSFKFGIEERISC-P 463 (809)
Q Consensus 389 ~~~~~~~~~~~~I~P~~f~~~i~~~~~~F~~~~QQDA~EFl~~LLd~L~~~~~~~----~~~~i~~~F~g~l~~~i~C-~ 463 (809)
....++|..|...++ |..++||||+|||.+||+.|++++... ....+.++|.|++.++++| .
T Consensus 68 --------~~~~i~p~~f~~~l~-----~~~~~QqDa~EFl~~lLd~L~~~l~~~~~~~~~~~i~~~F~G~~~~~~~C~~ 134 (324)
T cd02668 68 --------NRSVVDPSGFVKALG-----LDTGQQQDAQEFSKLFLSLLEAKLSKSKNPDLKNIVQDLFRGEYSYVTQCSK 134 (324)
T ss_pred --------CCceEChHHHHHHhC-----CCCccccCHHHHHHHHHHHHHHHHhhccCCcccchhhhhcceEEEEEEEeCC
Confidence 345799999988873 678899999999999999999987632 2357789999999999999 9
Q ss_pred CCCEeeeeecCeeeeeccCCccccchHHHHHHHHHHHhhhccCCCCCcccccCCCccHHHHHhhhcCCcccCc---ccCC
Q 003583 464 SGKVAYNRRLDYILSLGIPLDEATNKEELAAFQKLKMERISEGKDVTNEEIVRPRVPLEACLSTFSAPEELPD---FYST 540 (809)
Q Consensus 464 C~~vs~~~e~~~~LsL~ip~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~sL~~cL~~f~~~E~le~---~~C~ 540 (809)
|+.++.+.++|+.|+|+||.. .+|++||+.|+.+|.++| |.|+
T Consensus 135 C~~~s~~~e~f~~l~l~i~~~----------------------------------~sl~~~L~~~~~~e~l~g~~~~~C~ 180 (324)
T cd02668 135 CGRESSLPSKFYELELQLKGH----------------------------------KTLEECIDEFLKEEQLTGDNQYFCE 180 (324)
T ss_pred CCCccccccccEEEEEEeccc----------------------------------CCHHHHHHHhhCceecCCCccccCC
Confidence 999999999999999999741 489999999999999876 8999
Q ss_pred CCCCccceeEEeeccccCceeEEEEeeEEEccC-ceeeeceeeecCCCcccccccc
Q 003583 541 ALKAKTTATKSAGLTSFPDYLVLHMRKFVMEAG-WVPKKLDVYIDVPDIIDISHMR 595 (809)
Q Consensus 541 ~C~~~~~a~k~~~i~~lP~vLiI~LkRF~~~~~-~~~~Ki~~~V~fP~~LDL~~~~ 595 (809)
+|++++.+.|+..|.++|+||+|||+||.++.. +..+|++.+|.||+.|||++|+
T Consensus 181 ~C~~~~~a~k~~~i~~lP~iLii~LkRf~~d~~~~~~~Ki~~~v~fp~~Ldl~~~~ 236 (324)
T cd02668 181 SCNSKTDATRRIRLTTLPPTLNFQLLRFVFDRKTGAKKKLNASISFPEILDMGEYL 236 (324)
T ss_pred CCCceeeeEEEEEecCCCCeEEEEEEcceeecccCcceeCCcEEECCCeEechhhc
Confidence 999999999999999999999999999999853 6789999999999999999886
No 9
>cd02671 Peptidase_C19O A subfamily of Peptidase C19. Peptidase C19 contains ubiquitinyl hydrolases. They are intracellular peptidases that remove ubiquitin molecules from polyubiquinated peptides by cleavage of isopeptide bonds. They hydrolyze bonds involving the carboxyl group of the C-terminal Gly residue of ubiquitin. The purpose of the de-ubiquitination is thought to be editing of the ubiquitin conjugates, which could rescue them from degradation, as well as recycling of the ubiquitin. The ubiquitin/proteasome system is responsible for most protein turnover in the mammalian cell, and with over 50 members, family C19 is one of the largest families of peptidases in the human genome.
Probab=100.00 E-value=9.6e-54 Score=467.23 Aligned_cols=235 Identities=18% Similarity=0.247 Sum_probs=185.5
Q ss_pred ccccCCcccccccCCChhhHHHHHHHHhchHHHHHHHhcCCchhhhhccCCCCCCccHHHHHHHHH---HHHhcCCCCCC
Q 003583 304 EPLFGPGYTGLVNLGNSCYLAATMQVMFSTHAFCTRYYTQEPLKAAFEAAPADPTVDLNMQLTKLA---HGLLSGKYSVP 380 (809)
Q Consensus 304 ~p~~~~g~~GL~NLGNTCYmNSVLQ~L~~ip~f~~~~l~~~~~~~~~~~~~~~p~~~l~~ql~kL~---~~l~sg~ys~~ 380 (809)
++...++++||.|+|||||||||||+|+++|+||+.++... . ......++..++ ..++..
T Consensus 17 ~~~~~~~~~GL~NlGnTCYmNSvLQ~L~~~p~fr~~l~~~~------~------~~~~~~~~q~~~~~l~~~~~~----- 79 (332)
T cd02671 17 KRENLLPFVGLNNLGNTCYLNSVLQVLYFCPGFKHGLKHLV------S------LISSVEQLQSSFLLNPEKYND----- 79 (332)
T ss_pred ccccCCCCcceeccCceEeHHHHHHHHHcChHHHHHHHhhh------c------ccCcHHHHHHHHHHHHHHHhh-----
Confidence 45677899999999999999999999999999999886321 0 001122333333 333321
Q ss_pred hhhhhhhhhccccCCCCCCCCChHHHHHHHHhhCCCCCCcccCCHHHHHHHHHHHHHHHhCCCCCCCCcCccceEEEEEE
Q 003583 381 AQEKDAAANAATTTDTKQEGIPPRMFKAVIAASHPEFSSMRQQDALEFFLHFVDQVERVHSGKPEVDPTKSFKFGIEERI 460 (809)
Q Consensus 381 ~~~~~~~~~~~~~~~~~~~~I~P~~f~~~i~~~~~~F~~~~QQDA~EFl~~LLd~L~~~~~~~~~~~i~~~F~g~l~~~i 460 (809)
....+.|..|+..+++.+|.|.++.||||+|||++|||.|+. .+.++|+|.+.+++
T Consensus 80 ----------------~~~~~~P~~~~~~l~~~~~~f~~~~QQDA~EFl~~LLd~L~~--------~i~~~F~g~~~~~~ 135 (332)
T cd02671 80 ----------------ELANQAPRRLLNALREVNPMYEGYLQHDAQEVLQCILGNIQE--------LVEKDFQGQLVLRT 135 (332)
T ss_pred ----------------cccccCHHHHHHHHHHhccccCCccccCHHHHHHHHHHHHHH--------HHHhhhceEEEEEE
Confidence 223457999999999999999999999999999999999995 45689999999999
Q ss_pred Ee-cCCCEeeeeecCeeeeeccCCccccchHHHHHHHHHHHhhhccCCCCCcccccCCCccHHHHHhhhcCCcccCc---
Q 003583 461 SC-PSGKVAYNRRLDYILSLGIPLDEATNKEELAAFQKLKMERISEGKDVTNEEIVRPRVPLEACLSTFSAPEELPD--- 536 (809)
Q Consensus 461 ~C-~C~~vs~~~e~~~~LsL~ip~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~sL~~cL~~f~~~E~le~--- 536 (809)
+| .|++++.+.++|++|+||||.....+... ... ....+..+..+|++||+.|+++|.++|
T Consensus 136 ~C~~C~~~s~~~E~f~~lsL~i~~~~~~~~~~--------------~~~-~~~~~~~~~~tL~~~L~~f~~~E~l~g~n~ 200 (332)
T cd02671 136 RCLECETFTERREDFQDISVPVQESELSKSEE--------------SSE-ISPDPKTEMKTLKWAISQFASVERIVGEDK 200 (332)
T ss_pred EeCCCCCeeceecccEEEEEEeCCCccccccc--------------ccc-cccccccccCCHHHHHHHhCCcceecCCCC
Confidence 99 99999999999999999998754221100 000 000111234699999999999999964
Q ss_pred ccCCCCCCccceeEEeeccccCceeEEEEeeEEEccC-----ceeeeceeeecCCCccccccc
Q 003583 537 FYSTALKAKTTATKSAGLTSFPDYLVLHMRKFVMEAG-----WVPKKLDVYIDVPDIIDISHM 594 (809)
Q Consensus 537 ~~C~~C~~~~~a~k~~~i~~lP~vLiI~LkRF~~~~~-----~~~~Ki~~~V~fP~~LDL~~~ 594 (809)
|.|++|++++.|+|+..|.++|+||+|||+||.++.. ....|++.+|.||..|||.++
T Consensus 201 y~C~~C~~~~~a~k~~~~~~~P~vL~i~LkRF~~~~~~~~~~~~~~Ki~~~v~fp~~L~~~~~ 263 (332)
T cd02671 201 YFCENCHHYTEAERSLLFDKLPEVITIHLKCFAANGSEFDCYGGLSKVNTPLLTPLKLSLEEW 263 (332)
T ss_pred eeCCCCCCceeEEEEEEEecCCCEEEEEeeeeccccccccccCCceecCccccCccccccccc
Confidence 9999999999999999999999999999999998642 246799999999999998744
No 10
>cd02657 Peptidase_C19A A subfamily of Peptidase C19. Peptidase C19 contains ubiquitinyl hydrolases. They are intracellular peptidases that remove ubiquitin molecules from polyubiquinated peptides by cleavage of isopeptide bonds. They hydrolyse bonds involving the carboxyl group of the C-terminal Gly residue of ubiquitin. The purpose of the de-ubiquitination is thought to be editing of the ubiquitin conjugates, which could rescue them from degradation, as well as recycling of the ubiquitin. The ubiquitin/proteasome system is responsible for most protein turnover in the mammalian cell, and with over 50 members, family C19 is one of the largest families of peptidases in the human genome.
Probab=100.00 E-value=1.7e-53 Score=463.47 Aligned_cols=283 Identities=24% Similarity=0.415 Sum_probs=241.3
Q ss_pred ccccCCChhhHHHHHHHHhchHHHHHHHhcCCchhhhhccCCCCCCccHHHHHHHHHHHHhcCCCCCChhhhhhhhhccc
Q 003583 313 GLVNLGNSCYLAATMQVMFSTHAFCTRYYTQEPLKAAFEAAPADPTVDLNMQLTKLAHGLLSGKYSVPAQEKDAAANAAT 392 (809)
Q Consensus 313 GL~NLGNTCYmNSVLQ~L~~ip~f~~~~l~~~~~~~~~~~~~~~p~~~l~~ql~kL~~~l~sg~ys~~~~~~~~~~~~~~ 392 (809)
||.|+|||||||||||+|+++|+|+++++....... .......++.++|++|+..|+.+
T Consensus 1 Gl~N~GntCy~NsvLQ~L~~~~~f~~~~~~~~~~~~----~~~~~~~~~~~~l~~L~~~l~~~----------------- 59 (305)
T cd02657 1 GLTNLGNTCYLNSTLQCLRSVPELRDALKNYNPARR----GANQSSDNLTNALRDLFDTMDKK----------------- 59 (305)
T ss_pred CcccccchhHHHHHHHHHhCCHHHHHHHHhcccccc----ccccchhHHHHHHHHHHHHHHhC-----------------
Confidence 899999999999999999999999999986432110 12234568999999999999763
Q ss_pred cCCCCCCCCChHHHHHHHHhhCCCCC------CcccCCHHHHHHHHHHHHHHHhCC--CCCCCCcCccceEEEEEEEe-c
Q 003583 393 TTDTKQEGIPPRMFKAVIAASHPEFS------SMRQQDALEFFLHFVDQVERVHSG--KPEVDPTKSFKFGIEERISC-P 463 (809)
Q Consensus 393 ~~~~~~~~I~P~~f~~~i~~~~~~F~------~~~QQDA~EFl~~LLd~L~~~~~~--~~~~~i~~~F~g~l~~~i~C-~ 463 (809)
...++|..|+..+++..+.|+ +++||||+|||.+||+.|++++.. ...+.+.++|+|.++++++| .
T Consensus 60 -----~~~i~p~~~~~~l~~~~~~f~~~~~~~~~~QqDA~EFl~~lld~L~~~~~~~~~~~~~i~~~F~g~~~~~~~C~~ 134 (305)
T cd02657 60 -----QEPVPPIEFLQLLRMAFPQFAEKQNQGGYAQQDAEECWSQLLSVLSQKLPGAGSKGSFIDQLFGIELETKMKCTE 134 (305)
T ss_pred -----CCcCCcHHHHHHHHHHCcCcccccCCCCccccCHHHHHHHHHHHHHHHhcccCCCCcHHHHhhceEEEEEEEcCC
Confidence 247999999999999999995 449999999999999999999863 23457899999999999999 9
Q ss_pred CC-CEeeeeecCeeeeeccCCccccchHHHHHHHHHHHhhhccCCCCCcccccCCCccHHHHHhhhcCCcccCcccCCCC
Q 003583 464 SG-KVAYNRRLDYILSLGIPLDEATNKEELAAFQKLKMERISEGKDVTNEEIVRPRVPLEACLSTFSAPEELPDFYSTAL 542 (809)
Q Consensus 464 C~-~vs~~~e~~~~LsL~ip~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~sL~~cL~~f~~~E~le~~~C~~C 542 (809)
|+ .++.+.++|+.|+|+||.... ..+|++||+.++.++.. ..|+.|
T Consensus 135 C~~~~~~~~e~f~~Lsl~i~~~~~-------------------------------~~~l~~~L~~~~~~~~~--~~~~~~ 181 (305)
T cd02657 135 SPDEEEVSTESEYKLQCHISITTE-------------------------------VNYLQDGLKKGLEEEIE--KHSPTL 181 (305)
T ss_pred CCCCCccccccceEEEeecCCCcc-------------------------------cccHHHHHHHhhhhhhh--hcCccc
Confidence 99 799999999999999986421 14899999999976654 479999
Q ss_pred CCccceeEEeeccccCceeEEEEeeEEEccC-ceeeeceeeecCCCccccccccCCCCCCCCCCCCCCCCCCcccCCCCC
Q 003583 543 KAKTTATKSAGLTSFPDYLVLHMRKFVMEAG-WVPKKLDVYIDVPDIIDISHMRSKGLQPGEELLPEGGPEDEVQSNKPV 621 (809)
Q Consensus 543 ~~~~~a~k~~~i~~lP~vLiI~LkRF~~~~~-~~~~Ki~~~V~fP~~LDL~~~~~~~~~~~e~~l~~~~~~~~~~~~~~~ 621 (809)
++...++|+.+|.++|+||+|||+||.++.. ....|++++|.||++|||++|+..
T Consensus 182 ~~~~~~~k~~~i~~lP~vLii~LkRF~~~~~~~~~~Ki~~~v~fP~~Ldl~~~~~~------------------------ 237 (305)
T cd02657 182 GRDAIYTKTSRISRLPKYLTVQFVRFFWKRDIQKKAKILRKVKFPFELDLYELCTP------------------------ 237 (305)
T ss_pred CCCceEEEEEEeccCCcEEEEEEECCccccccCceeecCcEEECCceEecccccCC------------------------
Confidence 9999999999999999999999999999854 356799999999999999977531
Q ss_pred CcHHHHHHHHhcCCChHHHHHHHHHhCCccHHHHHHHhhhcCCCCCCCCCCccccccccCChhhhhhhhcCCCCHHHHHH
Q 003583 622 ANKDIVSQLVSMGFNHLHCEKAAVNTSNAGVEEAMNWLLSHMDDPDIDMPLSQETQCAAIDQSKVETLLSFGFSEEVARN 701 (809)
Q Consensus 622 ~~~~~~~ql~~mgf~~~~~~~a~~~t~n~~~e~a~~wl~~h~dd~d~~~p~~~~~~~~~~~~~~~~~l~~mgf~~~~a~~ 701 (809)
T Consensus 238 -------------------------------------------------------------------------------- 237 (305)
T cd02657 238 -------------------------------------------------------------------------------- 237 (305)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred HHHHcCCChhhhccccccCCCCCCCcccccccCCCCCCCCCCCCCCCCceEEEEEEEeeeccCCCccEEEEEEeeC--Cc
Q 003583 702 ALKASGGDIEKATDWIFNNPDASTSSDMDAATSSTAQTPADAGLPDGGGKYRLFGIVSHIGTSTQCGHYVAHILKD--GR 779 (809)
Q Consensus 702 aL~~~~~~~~~a~dwlfs~~dd~~~~~~~~~~~~~~~~~~~~~~~~~~~~Y~L~avI~H~G~s~~sGHYva~ikk~--~~ 779 (809)
+.+|+|+|||+|.|+++++|||+||+|.. +.
T Consensus 238 -----------------------------------------------~~~Y~L~~vI~H~G~~~~~GHY~~~~~~~~~~~ 270 (305)
T cd02657 238 -----------------------------------------------SGYYELVAVITHQGRSADSGHYVAWVRRKNDGK 270 (305)
T ss_pred -----------------------------------------------CCcEEEEEEEEecCCCCCCcEEEEEEEcCCCCe
Confidence 24699999999999989999999999986 89
Q ss_pred EEEEeCceeecccC---------CCCCceEEEEEE
Q 003583 780 WAIFNDNKVGASVD---------PPKEMGYLYFFE 805 (809)
Q Consensus 780 W~~fND~kV~~~~~---------~~~~~~Yi~~Y~ 805 (809)
|+.|||+.|+.+.+ .....||||||+
T Consensus 271 W~~fdD~~V~~~~~~~v~~~~~~~~~~~aYiL~Y~ 305 (305)
T cd02657 271 WIKFDDDKVSEVTEEDILKLSGGGDWHIAYILLYK 305 (305)
T ss_pred EEEEECCceEEeCHHHHHhhcCCCCCceEEEEEEC
Confidence 99999999997743 124689999996
No 11
>cd02667 Peptidase_C19K A subfamily of Peptidase C19. Peptidase C19 contains ubiquitinyl hydrolases. They are intracellular peptidases that remove ubiquitin molecules from polyubiquinated peptides by cleavage of isopeptide bonds. They hydrolyze bonds involving the carboxyl group of the C-terminal Gly residue of ubiquitin. The purpose of the de-ubiquitination is thought to be editing of the ubiquitin conjugates, which could rescue them from degradation, as well as recycling of the ubiquitin. The ubiquitin/proteasome system is responsible for most protein turnover in the mammalian cell, and with over 50 members, family C19 is one of the largest families of peptidases in the human genome.
Probab=100.00 E-value=7.9e-54 Score=459.65 Aligned_cols=185 Identities=25% Similarity=0.389 Sum_probs=168.0
Q ss_pred ccccCCChhhHHHHHHHHhchHHHHHHHhcCCchhhhhccCCCCCCccHHHHHHHHHHHHhcCCCCCChhhhhhhhhccc
Q 003583 313 GLVNLGNSCYLAATMQVMFSTHAFCTRYYTQEPLKAAFEAAPADPTVDLNMQLTKLAHGLLSGKYSVPAQEKDAAANAAT 392 (809)
Q Consensus 313 GL~NLGNTCYmNSVLQ~L~~ip~f~~~~l~~~~~~~~~~~~~~~p~~~l~~ql~kL~~~l~sg~ys~~~~~~~~~~~~~~ 392 (809)
||.|+|||||||||||+|+++|+|+++++.
T Consensus 1 Gl~N~GntCy~NsvLQ~L~~~~~~~~~~l~-------------------------------------------------- 30 (279)
T cd02667 1 GLSNLGNTCFFNAVMQNLSQTPALRELLSE-------------------------------------------------- 30 (279)
T ss_pred CCcCCCCchHHHHHHHHHhcCHHHHHHHHH--------------------------------------------------
Confidence 899999999999999999999999999872
Q ss_pred cCCCCCCCCChHHHHHHHHhhCCCCCCcccCCHHHHHHHHHHHHHHHhCCCCCCCCcCccceEEEEEEEe-cCCCEeeee
Q 003583 393 TTDTKQEGIPPRMFKAVIAASHPEFSSMRQQDALEFFLHFVDQVERVHSGKPEVDPTKSFKFGIEERISC-PSGKVAYNR 471 (809)
Q Consensus 393 ~~~~~~~~I~P~~f~~~i~~~~~~F~~~~QQDA~EFl~~LLd~L~~~~~~~~~~~i~~~F~g~l~~~i~C-~C~~vs~~~ 471 (809)
+|..|+..+++.+|+|.+++||||+|||++||+.|+. .+.++|.|+++++++| .|+.++.+.
T Consensus 31 ---------~P~~~~~~l~~~~~~f~~~~QqDA~Efl~~lld~l~~--------~i~~~F~G~~~~~i~C~~C~~~s~~~ 93 (279)
T cd02667 31 ---------TPKELFSQVCRKAPQFKGYQQQDSHELLRYLLDGLRT--------FIDSIFGGELTSTIMCESCGTVSLVY 93 (279)
T ss_pred ---------CHHHHHHHHHHhhHhhcCCchhhHHHHHHHHHHHHHH--------hhhhhcceEEEEEEEcCCCCCEeCcc
Confidence 2567888888888999999999999999999999992 6779999999999999 999999999
Q ss_pred ecCeeeeeccCCccccchHHHHHHHHHHHhhhccCCCCCcccccCCCccHHHHHhhhcCCcccCc---ccCCCCCCccce
Q 003583 472 RLDYILSLGIPLDEATNKEELAAFQKLKMERISEGKDVTNEEIVRPRVPLEACLSTFSAPEELPD---FYSTALKAKTTA 548 (809)
Q Consensus 472 e~~~~LsL~ip~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~sL~~cL~~f~~~E~le~---~~C~~C~~~~~a 548 (809)
++|+.|+||++... ...++|++||+.|+.+|.++| |.|+.|++ |
T Consensus 94 E~f~~L~Lp~~~~~------------------------------~~~~sL~~~L~~~~~~E~l~~~~~~~C~~C~~---a 140 (279)
T cd02667 94 EPFLDLSLPRSDEI------------------------------KSECSIESCLKQFTEVEILEGNNKFACENCTK---A 140 (279)
T ss_pred ccceEEecCCCccc------------------------------CCCCCHHHHHHhhcCeeEecCCCcccCCccCc---e
Confidence 99999999886422 123799999999999999986 89999987 8
Q ss_pred eEEeeccccCceeEEEEeeEEEccCceeeeceeeecCCCccccccccCC
Q 003583 549 TKSAGLTSFPDYLVLHMRKFVMEAGWVPKKLDVYIDVPDIIDISHMRSK 597 (809)
Q Consensus 549 ~k~~~i~~lP~vLiI~LkRF~~~~~~~~~Ki~~~V~fP~~LDL~~~~~~ 597 (809)
+|+.+|.++|+||+|||+||.++.+|..+|++++|.||++|||++|+..
T Consensus 141 ~k~~~i~~~P~~Lii~LkRF~~~~~~~~~Ki~~~v~fP~~Ldl~~~~~~ 189 (279)
T cd02667 141 KKQYLISKLPPVLVIHLKRFQQPRSANLRKVSRHVSFPEILDLAPFCDP 189 (279)
T ss_pred eeEeEhhhCCCeEEEEEeccccCcccCceecCceEeCCCccchhhccCc
Confidence 9999999999999999999999977788999999999999999999754
No 12
>cd02664 Peptidase_C19H A subfamily of Peptidase C19. Peptidase C19 contains ubiquitinyl hydrolases. They are intracellular peptidases that remove ubiquitin molecules from polyubiquinated peptides by cleavage of isopeptide bonds. They hydrolyze bonds involving the carboxyl group of the C-terminal Gly residue of ubiquitin. The purpose of the de-ubiquitination is thought to be editing of the ubiquitin conjugates, which could rescue them from degradation, as well as recycling of the ubiquitin. The ubiquitin/proteasome system is responsible for most protein turnover in the mammalian cell, and with over 50 members, family C19 is one of the largest families of peptidases in the human genome.
Probab=100.00 E-value=6e-53 Score=462.70 Aligned_cols=208 Identities=22% Similarity=0.378 Sum_probs=178.5
Q ss_pred ccccCCChhhHHHHHHHHhchHHHHHHHhcCCchhhhhccCCCCCCccHHHHHHHHHHHHhcCCCCCChhhhhhhhhccc
Q 003583 313 GLVNLGNSCYLAATMQVMFSTHAFCTRYYTQEPLKAAFEAAPADPTVDLNMQLTKLAHGLLSGKYSVPAQEKDAAANAAT 392 (809)
Q Consensus 313 GL~NLGNTCYmNSVLQ~L~~ip~f~~~~l~~~~~~~~~~~~~~~p~~~l~~ql~kL~~~l~sg~ys~~~~~~~~~~~~~~ 392 (809)
||.|+||||||||+||+|+++|+||+.++..... ......++.++|..++..|...
T Consensus 1 GL~NlGnTCY~NS~LQ~L~~~~~fr~~ll~~~~~-------~~~~~~~~~~~L~~lf~~l~~~----------------- 56 (327)
T cd02664 1 GLINLGNTCYMNSVLQALFMAKDFRRQVLSLNLP-------RLGDSQSVMKKLQLLQAHLMHT----------------- 56 (327)
T ss_pred CCcCCcccHHHHHHHHHHHCcHHHHHHHHcCCcc-------ccCCcchHHHHHHHHHHHHhhc-----------------
Confidence 8999999999999999999999999999864311 0123456788899998877542
Q ss_pred cCCCCCCCCChHH-HHHHHHhhCCCCCCcccCCHHHHHHHHHHHHHHHhCCCCCCCCcCccceEEEEEEEe-cCCCEeee
Q 003583 393 TTDTKQEGIPPRM-FKAVIAASHPEFSSMRQQDALEFFLHFVDQVERVHSGKPEVDPTKSFKFGIEERISC-PSGKVAYN 470 (809)
Q Consensus 393 ~~~~~~~~I~P~~-f~~~i~~~~~~F~~~~QQDA~EFl~~LLd~L~~~~~~~~~~~i~~~F~g~l~~~i~C-~C~~vs~~ 470 (809)
....+.|.. |+...+ .+.|..++||||+|||.+||+.|+. .+.++|+|++.++++| .|+.++.+
T Consensus 57 ----~~~~~~~~~~~l~~~~--~~~f~~~~QqDa~EFl~~lLd~l~~--------~i~~~F~G~~~~~i~C~~C~~~s~~ 122 (327)
T cd02664 57 ----QRRAEAPPDYFLEASR--PPWFTPGSQQDCSEYLRYLLDRLHT--------LIEKMFGGKLSTTIRCLNCNSTSAR 122 (327)
T ss_pred ----CCcccCCHHHHHHHhc--ccccCCCCcCCHHHHHHHHHHHHHH--------HHHhhCcEEeEeEEEcCCCCCEecc
Confidence 233455554 555443 5789999999999999999999992 5779999999999999 99999999
Q ss_pred eecCeeeeeccCCccccchHHHHHHHHHHHhhhccCCCCCcccccCCCccHHHHHhhhcCCcccCc---ccCCCCCCccc
Q 003583 471 RRLDYILSLGIPLDEATNKEELAAFQKLKMERISEGKDVTNEEIVRPRVPLEACLSTFSAPEELPD---FYSTALKAKTT 547 (809)
Q Consensus 471 ~e~~~~LsL~ip~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~sL~~cL~~f~~~E~le~---~~C~~C~~~~~ 547 (809)
.+++..|+|+|| +|++||+.|+.+|.++| |+|++|++++.
T Consensus 123 ~e~f~~l~L~i~-------------------------------------sl~~~l~~~~~~E~l~g~n~~~C~~C~~~~~ 165 (327)
T cd02664 123 TERFRDLDLSFP-------------------------------------SVQDLLNYFLSPEKLTGDNQYYCEKCASLQD 165 (327)
T ss_pred cccceeeecCCC-------------------------------------CHHHHHHHhcCeeEccCCCceeCCccCCccc
Confidence 999999999985 57899999999999976 99999999999
Q ss_pred eeEEeeccccCceeEEEEeeEEEccC-ceeeeceeeecCCCcccccccc
Q 003583 548 ATKSAGLTSFPDYLVLHMRKFVMEAG-WVPKKLDVYIDVPDIIDISHMR 595 (809)
Q Consensus 548 a~k~~~i~~lP~vLiI~LkRF~~~~~-~~~~Ki~~~V~fP~~LDL~~~~ 595 (809)
+.|+.+|.++|+||+|||+||.++.. +..+|++.+|.||+.|||..+.
T Consensus 166 a~k~~~i~~lP~vLii~LkRF~~~~~~~~~~Ki~~~v~fp~~ldl~~~~ 214 (327)
T cd02664 166 AEKEMKVTGAPEYLILTLLRFSYDQKTHVREKIMDNVSINEVLSLPVRV 214 (327)
T ss_pred eeEEEEcccCChhhEEEeeeeEEccccCcceecCceEecCCEEecCccc
Confidence 99999999999999999999999864 5678999999999999998775
No 13
>cd02661 Peptidase_C19E A subfamily of Peptidase C19. Peptidase C19 contains ubiquitinyl hydrolases. They are intracellular peptidases that remove ubiquitin molecules from polyubiquinated peptides by cleavage of isopeptide bonds. They hydrolyze bonds involving the carboxyl group of the C-terminal Gly residue of ubiquitin. The purpose of the de-ubiquitination is thought to be editing of the ubiquitin conjugates, which could rescue them from degradation, as well as recycling of the ubiquitin. The ubiquitin/proteasome system is responsible for most protein turnover in the mammalian cell, and with over 50 members, family C19 is one of the largest families of peptidases in the human genome.
Probab=100.00 E-value=1.1e-51 Score=448.35 Aligned_cols=284 Identities=25% Similarity=0.411 Sum_probs=245.9
Q ss_pred ccccccCCChhhHHHHHHHHhchHHHHHHHhcCCchhhhhccCCCCCCccHHHHHHHHHHHHhcCCCCCChhhhhhhhhc
Q 003583 311 YTGLVNLGNSCYLAATMQVMFSTHAFCTRYYTQEPLKAAFEAAPADPTVDLNMQLTKLAHGLLSGKYSVPAQEKDAAANA 390 (809)
Q Consensus 311 ~~GL~NLGNTCYmNSVLQ~L~~ip~f~~~~l~~~~~~~~~~~~~~~p~~~l~~ql~kL~~~l~sg~ys~~~~~~~~~~~~ 390 (809)
++||.|+|||||||||||+|+++|+|+++++...+.. ....+..++.++|.+++..++..
T Consensus 1 ~~GL~N~gntCY~NsvLQ~L~~~~~~~~~~~~~~~~~-----~~~~~~~~~~~~l~~~~~~~~~~--------------- 60 (304)
T cd02661 1 GAGLQNLGNTCFLNSVLQCLTHTPPLANYLLSREHSK-----DCCNEGFCMMCALEAHVERALAS--------------- 60 (304)
T ss_pred CCCccccCchhHHHHHHHHhhCCHHHHHHHhcchhhh-----hccCCcchHHHHHHHHHHHHHhC---------------
Confidence 5899999999999999999999999999998543211 12245568999999999888753
Q ss_pred cccCCCCCCCCChHHHHHHHHhhCCCCCCcccCCHHHHHHHHHHHHHHHhCCC------------CCCCCcCccceEEEE
Q 003583 391 ATTTDTKQEGIPPRMFKAVIAASHPEFSSMRQQDALEFFLHFVDQVERVHSGK------------PEVDPTKSFKFGIEE 458 (809)
Q Consensus 391 ~~~~~~~~~~I~P~~f~~~i~~~~~~F~~~~QQDA~EFl~~LLd~L~~~~~~~------------~~~~i~~~F~g~l~~ 458 (809)
....+.|..|...++...+.|+.+.||||+|||.+||+.|+++.... ..+.+.++|+|.+.+
T Consensus 61 ------~~~~~~p~~~~~~l~~~~~~f~~~~qqDa~Efl~~ll~~l~~~~~~~~~~~~~~~~~~~~~~~i~~~F~g~~~~ 134 (304)
T cd02661 61 ------SGPGSAPRIFSSNLKQISKHFRIGRQEDAHEFLRYLLDAMQKACLDRFKKLKAVDPSSQETTLVQQIFGGYLRS 134 (304)
T ss_pred ------CCCccChHHHHHHHHHHHHhhcCcchhhHHHHHHHHHHHHHHHHhhhcccccccCccccCCChhhhcCCcEEee
Confidence 35678999999999999999999999999999999999999875321 134678899999999
Q ss_pred EEEe-cCCCEeeeeecCeeeeeccCCccccchHHHHHHHHHHHhhhccCCCCCcccccCCCccHHHHHhhhcCCcccCc-
Q 003583 459 RISC-PSGKVAYNRRLDYILSLGIPLDEATNKEELAAFQKLKMERISEGKDVTNEEIVRPRVPLEACLSTFSAPEELPD- 536 (809)
Q Consensus 459 ~i~C-~C~~vs~~~e~~~~LsL~ip~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~sL~~cL~~f~~~E~le~- 536 (809)
+++| .|+.++.+.++++.|+|+||.. .+|+++|+.|+.+|.+++
T Consensus 135 ~~~C~~C~~~s~~~e~~~~l~l~i~~~----------------------------------~~l~~~l~~~~~~e~~~~~ 180 (304)
T cd02661 135 QVKCLNCKHVSNTYDPFLDLSLDIKGA----------------------------------DSLEDALEQFTKPEQLDGE 180 (304)
T ss_pred eEEeCCCCCCcCccccceeeeeecCCC----------------------------------CcHHHHHHHhcCceeeCCC
Confidence 9999 9999999999999999999742 389999999999999886
Q ss_pred --ccCCCCCCccceeEEeeccccCceeEEEEeeEEEccCceeeeceeeecCCCccccccccCCCCCCCCCCCCCCCCCCc
Q 003583 537 --FYSTALKAKTTATKSAGLTSFPDYLVLHMRKFVMEAGWVPKKLDVYIDVPDIIDISHMRSKGLQPGEELLPEGGPEDE 614 (809)
Q Consensus 537 --~~C~~C~~~~~a~k~~~i~~lP~vLiI~LkRF~~~~~~~~~Ki~~~V~fP~~LDL~~~~~~~~~~~e~~l~~~~~~~~ 614 (809)
|.|++|++++.+.++.+|.++|++|+|||+||.++ ...|+...|.||++|||.+|+..+.
T Consensus 181 ~~~~C~~C~~~~~~~~~~~i~~~P~iL~i~l~Rf~~~---~~~Ki~~~v~f~~~L~l~~~~~~~~--------------- 242 (304)
T cd02661 181 NKYKCERCKKKVKASKQLTIHRAPNVLTIHLKRFSNF---RGGKINKQISFPETLDLSPYMSQPN--------------- 242 (304)
T ss_pred CCeeCCCCCCccceEEEEEEecCCcEEEEEEeccccC---CccccCCeEecCCeechhhccccCC---------------
Confidence 89999999999999999999999999999999976 4679999999999999998864310
Q ss_pred ccCCCCCCcHHHHHHHHhcCCChHHHHHHHHHhCCccHHHHHHHhhhcCCCCCCCCCCccccccccCChhhhhhhhcCCC
Q 003583 615 VQSNKPVANKDIVSQLVSMGFNHLHCEKAAVNTSNAGVEEAMNWLLSHMDDPDIDMPLSQETQCAAIDQSKVETLLSFGF 694 (809)
Q Consensus 615 ~~~~~~~~~~~~~~ql~~mgf~~~~~~~a~~~t~n~~~e~a~~wl~~h~dd~d~~~p~~~~~~~~~~~~~~~~~l~~mgf 694 (809)
T Consensus 243 -------------------------------------------------------------------------------- 242 (304)
T cd02661 243 -------------------------------------------------------------------------------- 242 (304)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred CHHHHHHHHHHcCCChhhhccccccCCCCCCCcccccccCCCCCCCCCCCCCCCCceEEEEEEEeeeccCCCccEEEEEE
Q 003583 695 SEEVARNALKASGGDIEKATDWIFNNPDASTSSDMDAATSSTAQTPADAGLPDGGGKYRLFGIVSHIGTSTQCGHYVAHI 774 (809)
Q Consensus 695 ~~~~a~~aL~~~~~~~~~a~dwlfs~~dd~~~~~~~~~~~~~~~~~~~~~~~~~~~~Y~L~avI~H~G~s~~sGHYva~i 774 (809)
.+...|+|+|||+|.|.++++|||+||+
T Consensus 243 ----------------------------------------------------~~~~~Y~L~~vi~H~G~~~~~GHY~~~~ 270 (304)
T cd02661 243 ----------------------------------------------------DGPLKYKLYAVLVHSGFSPHSGHYYCYV 270 (304)
T ss_pred ----------------------------------------------------CCCceeeEEEEEEECCCCCCCcCCEEEE
Confidence 1135799999999999988999999999
Q ss_pred ee-CCcEEEEeCceeeccc--CCCCCceEEEEE
Q 003583 775 LK-DGRWAIFNDNKVGASV--DPPKEMGYLYFF 804 (809)
Q Consensus 775 kk-~~~W~~fND~kV~~~~--~~~~~~~Yi~~Y 804 (809)
|. +++|++|||+.|+.+. +.....||||||
T Consensus 271 ~~~~~~W~~~nD~~V~~v~~~~v~~~~aYil~Y 303 (304)
T cd02661 271 KSSNGKWYNMDDSKVSPVSIETVLSQKAYILFY 303 (304)
T ss_pred ECCCCCEEEEeCCeeEECCHHHhcCCCcEEEEe
Confidence 96 7899999999999874 356779999999
No 14
>cd02659 peptidase_C19C A subfamily of Peptidase C19. Peptidase C19 contains ubiquitinyl hydrolases. They are intracellular peptidases that remove ubiquitin molecules from polyubiquinated peptides by cleavage of isopeptide bonds. They hydrolyze bonds involving the carboxyl group of the C-terminal Gly residue of ubiquitin. The purpose of the de-ubiquitination is thought to be editing of the ubiquitin conjugates, which could rescue them from degradation, as well as recycling of the ubiquitin. The ubiquitin/proteasome system is responsible for most protein turnover in the mammalian cell, and with over 50 members, family C19 is one of the largest families of peptidases in the human genome.
Probab=100.00 E-value=6.7e-51 Score=448.68 Aligned_cols=228 Identities=20% Similarity=0.308 Sum_probs=191.1
Q ss_pred cccccccCCChhhHHHHHHHHhchHHHHHHHhcCCchhhhhccCCCCCCccHHHHHHHHHHHHhcCCCCCChhhhhhhhh
Q 003583 310 GYTGLVNLGNSCYLAATMQVMFSTHAFCTRYYTQEPLKAAFEAAPADPTVDLNMQLTKLAHGLLSGKYSVPAQEKDAAAN 389 (809)
Q Consensus 310 g~~GL~NLGNTCYmNSVLQ~L~~ip~f~~~~l~~~~~~~~~~~~~~~p~~~l~~ql~kL~~~l~sg~ys~~~~~~~~~~~ 389 (809)
|++||.|+||||||||+||+|+++|+|+++++... ......+..++.++|.+|+..|..+.+
T Consensus 1 g~~GL~N~GntCY~NsvLQ~L~~~~~f~~~~l~~~------~~~~~~~~~~~~~~l~~lf~~~~~~~~------------ 62 (334)
T cd02659 1 GYVGLKNQGATCYMNSLLQQLYMTPEFRNAVYSIP------PTEDDDDNKSVPLALQRLFLFLQLSES------------ 62 (334)
T ss_pred CCCCcccCCcchHHHHHHHHHhcCHHHHHHHHcCC------CcccCcccccHHHHHHHHHHHHHhCCc------------
Confidence 78999999999999999999999999999998641 111224567899999999999987522
Q ss_pred ccccCCCCCCCCChHHHHHHHHhhCCCCCCcccCCHHHHHHHHHHHHHHHhCCC-CCCCCcCccceEEEEEEEe-cCCCE
Q 003583 390 AATTTDTKQEGIPPRMFKAVIAASHPEFSSMRQQDALEFFLHFVDQVERVHSGK-PEVDPTKSFKFGIEERISC-PSGKV 467 (809)
Q Consensus 390 ~~~~~~~~~~~I~P~~f~~~i~~~~~~F~~~~QQDA~EFl~~LLd~L~~~~~~~-~~~~i~~~F~g~l~~~i~C-~C~~v 467 (809)
..+.|..+..+.......|..++||||+|||.+||+.|+++.+.. ....+.++|.|.+.+.++| .|+..
T Consensus 63 ---------~~~~~~~~~~~~~~~~~~~~~~~QqDa~Efl~~ll~~l~~~~~~~~~~~~i~~lF~g~~~~~~~C~~C~~~ 133 (334)
T cd02659 63 ---------PVKTTELTDKTRSFGWDSLNTFEQHDVQEFFRVLFDKLEEKLKGTGQEGLIKNLFGGKLVNYIICKECPHE 133 (334)
T ss_pred ---------cccCcchhheeccCCCCCCCcccchhHHHHHHHHHHHHHHHhccCcccchhhhhCceEEEeEEEecCCCce
Confidence 223333333222233467889999999999999999999988642 2357889999999999999 99999
Q ss_pred eeeeecCeeeeeccCCccccchHHHHHHHHHHHhhhccCCCCCcccccCCCccHHHHHhhhcCCcccCc---ccCCCCCC
Q 003583 468 AYNRRLDYILSLGIPLDEATNKEELAAFQKLKMERISEGKDVTNEEIVRPRVPLEACLSTFSAPEELPD---FYSTALKA 544 (809)
Q Consensus 468 s~~~e~~~~LsL~ip~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~sL~~cL~~f~~~E~le~---~~C~~C~~ 544 (809)
+...++++.|+|++|.. .+|++||+.|+.+|.+++ |.|++|++
T Consensus 134 s~~~e~f~~l~l~i~~~----------------------------------~~l~~~l~~~~~~e~l~~~~~~~C~~C~~ 179 (334)
T cd02659 134 SEREEYFLDLQVAVKGK----------------------------------KNLEESLDAYVQGETLEGDNKYFCEKCGK 179 (334)
T ss_pred ecccccceEEEEEcCCC----------------------------------CCHHHHHHHhcCeeEecCCccEecCcCCC
Confidence 99999999999999742 489999999999999886 99999999
Q ss_pred ccceeEEeeccccCceeEEEEeeEEEcc-CceeeeceeeecCCCccccccccCCC
Q 003583 545 KTTATKSAGLTSFPDYLVLHMRKFVMEA-GWVPKKLDVYIDVPDIIDISHMRSKG 598 (809)
Q Consensus 545 ~~~a~k~~~i~~lP~vLiI~LkRF~~~~-~~~~~Ki~~~V~fP~~LDL~~~~~~~ 598 (809)
++.+.|+..|.++|+||+|||+||.++. .+..+|++.+|.||..|||++|+...
T Consensus 180 ~~~~~k~~~i~~lP~vLii~l~Rf~~~~~~~~~~K~~~~v~fp~~Ldl~~~~~~~ 234 (334)
T cd02659 180 KVDAEKGVCFKKLPPVLTLQLKRFEFDFETMMRIKINDRFEFPLELDMEPYTEKG 234 (334)
T ss_pred cccEEEEEEeecCCCEEEEEeeeeEEccccCcceeCCceEeCCceecCccccccc
Confidence 9999999999999999999999999974 35678999999999999999887653
No 15
>KOG1873 consensus Ubiquitin-specific protease [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=5.7e-52 Score=459.19 Aligned_cols=263 Identities=23% Similarity=0.314 Sum_probs=161.8
Q ss_pred CCCeEEecccCcccccCCcCCCCCCCchHhhHhhhc---CccEEEeeCccccCCCCcEEEeccCCC-cccc--h-hHHHH
Q 003583 190 RDNLWLNLTDGMILCGRRNWDGTGGNNHAVEHYKET---GYPLAVKLGTITSDLEGADVFSYPEDD-SVVD--P-LLAQH 262 (809)
Q Consensus 190 ~~~lw~CL~Cg~~~Cgr~~~~g~~gn~ha~~H~~~~---~H~~~v~lgtit~~~~~~~v~cy~cd~-~v~d--~-~l~~~ 262 (809)
...+|+||.||+.||||.. -..||++||+.. .|+++|++ .++.+|||.||. .|.. . .|.+.
T Consensus 90 ~~~iWLCLkCG~q~CG~~~-----~~~halkH~~~~r~~~Hclvin~-------~n~~~WCy~Cd~kl~~~~~kn~l~e~ 157 (877)
T KOG1873|consen 90 DNAIWLCLKCGYQGCGRNS-----ESQHALKHFLTPRSEPHCLVINL-------INWLIWCYSCDAKLVPFDKKNLLGEK 157 (877)
T ss_pred ccceeeecccCCeeeCCCc-----ccchhhhhhcccCCCCeeEEEEe-------eeeeeEEEeccchhccccchhHHHHH
Confidence 4569999999999999953 347999999975 59999988 379999999997 6542 2 23322
Q ss_pred HHhhccccccc---cccccch-hhhhhhccccccccccccCCCccccccCCcccccccCCChhhHHHHHHHHhchHHHHH
Q 003583 263 LAFFGIDFSSL---QKTEMTT-AERELDQNTNFDWNRIQESGQDVEPLFGPGYTGLVNLGNSCYLAATMQVMFSTHAFCT 338 (809)
Q Consensus 263 L~~~gi~~~~~---~kteksl-~el~~~~n~~~e~~~~~e~g~~l~p~~~~g~~GL~NLGNTCYmNSVLQ~L~~ip~f~~ 338 (809)
...+ +.+... .++..++ +.+..+.-.+ -+.+...| +....++..+||.|||||||+|||||.|..+|.+++
T Consensus 158 vd~l-~k~a~~~~~~~spn~~~~s~~~ek~e~--~ski~~gg--ie~~~~~~VrGL~NLGNTCFFNavMQnL~qt~~L~d 232 (877)
T KOG1873|consen 158 VDLL-IKVASKTSLTRSPNTLKISSEEEKLEK--GSKIKKGG--IEKRRGYIVRGLTNLGNTCFFNAVMQNLAQTPALRD 232 (877)
T ss_pred HHHH-HHHHhccccccCCCcccchhhHHhhhh--cccccccC--ccccccccccccccccchhhHHHHHHHHhhcHHHHH
Confidence 1111 111111 1111111 1111000000 00011111 334567889999999999999999999999999999
Q ss_pred HHhcCCchhhhhccCCCCCCccHHHHHHHHHHHHhcC--CCCCChhhhhhhhhccccCCCCCCCCChHHHHHHHHhhCCC
Q 003583 339 RYYTQEPLKAAFEAAPADPTVDLNMQLTKLAHGLLSG--KYSVPAQEKDAAANAATTTDTKQEGIPPRMFKAVIAASHPE 416 (809)
Q Consensus 339 ~~l~~~~~~~~~~~~~~~p~~~l~~ql~kL~~~l~sg--~ys~~~~~~~~~~~~~~~~~~~~~~I~P~~f~~~i~~~~~~ 416 (809)
.|.........+. ... ....+|..|+..+.+- .+..+.. . -+..+.....|+|+.|+..+.+.+|+
T Consensus 233 ~l~e~~~Sgt~v~--I~~---~~~s~l~~L~~el~~~g~lt~al~~-~------~e~~e~~ksv~~Pr~lF~~~C~k~pq 300 (877)
T KOG1873|consen 233 VLKEEKESGTSVK--IRP---PLDSSLSPLFSELSSPGPLTYALAN-L------LEMSETTKSVITPRTLFGQFCSKAPQ 300 (877)
T ss_pred HHHhhccCCceeE--ecC---ccccchhhHHHhccCCcchhHHHHh-h------hhhhhccCCccCHHHHHHHHHHhCCc
Confidence 9986432221111 001 1112223333222110 0000000 0 00122467899999999999999999
Q ss_pred CCCcccCCHHHHHHHHHHHHHHHhCCCCC----------------------------------CCCcCccceEEEEEEEe
Q 003583 417 FSSMRQQDALEFFLHFVDQVERVHSGKPE----------------------------------VDPTKSFKFGIEERISC 462 (809)
Q Consensus 417 F~~~~QQDA~EFl~~LLd~L~~~~~~~~~----------------------------------~~i~~~F~g~l~~~i~C 462 (809)
|.++.||||||+|++|||.|..+..+... ......|.+.+.+.+.|
T Consensus 301 F~g~~QhDsHELLR~LLD~l~~EE~~~~kk~Il~~fG~~t~~l~scle~~q~sKvYe~f~~~~~~vp~~~~~~~~s~~~~ 380 (877)
T KOG1873|consen 301 FRGYDQHDSHELLRCLLDSLRSEESRRRKKNILSNFGGETSSLVSCLECGQKSKVYEPFKDLSLPVPLSFNGPLTSQIEC 380 (877)
T ss_pred ccccccccHHHHHHHHHHhhhHHHHHHHHHhHHHhhCccccchhhhhhccchhhcccccccCCcccccccCCCcccchhh
Confidence 99999999999999999999876532111 12236777778888888
Q ss_pred -cCCCEeeeeecCeeeeeccC
Q 003583 463 -PSGKVAYNRRLDYILSLGIP 482 (809)
Q Consensus 463 -~C~~vs~~~e~~~~LsL~ip 482 (809)
.|. ++...+.|.+.+|||-
T Consensus 381 ~~~~-vss~~~s~~~~t~pv~ 400 (877)
T KOG1873|consen 381 QACD-VSSVHESFLSETLPVL 400 (877)
T ss_pred hccc-eeccchhhcccccccc
Confidence 776 6667777777777763
No 16
>COG5533 UBP5 Ubiquitin C-terminal hydrolase [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=2.3e-49 Score=399.46 Aligned_cols=301 Identities=23% Similarity=0.353 Sum_probs=233.4
Q ss_pred cccccccCCChhhHHHHHHHHhchHHHHHHHhcCCchhhhhccCCCCCC-ccHHHHHHHHHHHHhcCCCCCChhhhhhhh
Q 003583 310 GYTGLVNLGNSCYLAATMQVMFSTHAFCTRYYTQEPLKAAFEAAPADPT-VDLNMQLTKLAHGLLSGKYSVPAQEKDAAA 388 (809)
Q Consensus 310 g~~GL~NLGNTCYmNSVLQ~L~~ip~f~~~~l~~~~~~~~~~~~~~~p~-~~l~~ql~kL~~~l~sg~ys~~~~~~~~~~ 388 (809)
.+.||+|+|||||||++||||+++.++...++...+...+....+.... .....+++-|...+.
T Consensus 70 ~p~GL~N~GNtCymNc~lQCl~~~~dL~~M~~~~~ylq~INtd~prg~~g~~~~k~F~~l~~~~~--------------- 134 (415)
T COG5533 70 PPNGLRNKGNTCYMNCALQCLLSIGDLNTMLQGRFYLQNINTDFPRGKPGSNAFKQFIALYETPG--------------- 134 (415)
T ss_pred CCccccccCceehHHHHHHHHHhhhHHHHHhhhhhhhhhccCCCCCCCcchhHHHHHHHHHhccc---------------
Confidence 4789999999999999999999999999866654444444332332222 234444444443332
Q ss_pred hccccCCCCCCCCChHHHHHHHHhhCCCCCCcccCCHHHHHHHHHHHHHHHhCCCCC-----------------------
Q 003583 389 NAATTTDTKQEGIPPRMFKAVIAASHPEFSSMRQQDALEFFLHFVDQVERVHSGKPE----------------------- 445 (809)
Q Consensus 389 ~~~~~~~~~~~~I~P~~f~~~i~~~~~~F~~~~QQDA~EFl~~LLd~L~~~~~~~~~----------------------- 445 (809)
...+..|+|+.|+..++..++.|++..|||+|||+.++||.||++++...+
T Consensus 135 ------~Hg~~sis~~nF~~i~~~~n~~fs~dmQqD~qEFl~fflD~LHedln~N~Srs~i~~l~de~e~~Reel~l~~~ 208 (415)
T COG5533 135 ------CHGPKSISPRNFIDILSGRNKLFSGDMQQDSQEFLIFFLDLLHEDLNGNKSRSPILELKDEFEEVREELPLSHF 208 (415)
T ss_pred ------cCCCcccchHHHHHHHccccccccccchhhHHHHHHHHHHHHHhhhcCCcccccccccchHHHHHHhhcCcchh
Confidence 135667999999999999999999999999999999999999999864321
Q ss_pred -------------CCCcCccceEEEEEEEe-cCCCEeeeeecCeeeeeccCCccccchHHHHHHHHHHHhhhccCCCCCc
Q 003583 446 -------------VDPTKSFKFGIEERISC-PSGKVAYNRRLDYILSLGIPLDEATNKEELAAFQKLKMERISEGKDVTN 511 (809)
Q Consensus 446 -------------~~i~~~F~g~l~~~i~C-~C~~vs~~~e~~~~LsL~ip~~~~~~~~~~~~~~~~~~~~~~~g~~~~~ 511 (809)
+.+.+.|.|+..++++| .|++.+++..+|..|++|++.-.
T Consensus 209 S~~EWn~~L~sn~S~v~~~f~gq~~srlqC~~C~~TStT~a~fs~l~vp~~~v~-------------------------- 262 (415)
T COG5533 209 SHHEWNLHLRSNKSLVAKTFFGQDKSRLQCEACNYTSTTIAMFSTLLVPPYEVV-------------------------- 262 (415)
T ss_pred hhhhhHHhhccchHHHHHHHhhhhhhhhhhhhcCCceeEEeccceeeeccchhe--------------------------
Confidence 45668899999999999 99999999999999999987532
Q ss_pred ccccCCCccHHHHHhhhcCCcccCc---ccCCCCCCccceeEEeeccccCceeEEEEeeEEEccCceeeeceeeecCCCc
Q 003583 512 EEIVRPRVPLEACLSTFSAPEELPD---FYSTALKAKTTATKSAGLTSFPDYLVLHMRKFVMEAGWVPKKLDVYIDVPDI 588 (809)
Q Consensus 512 ~~~~~~~~sL~~cL~~f~~~E~le~---~~C~~C~~~~~a~k~~~i~~lP~vLiI~LkRF~~~~~~~~~Ki~~~V~fP~~ 588 (809)
++.|.+||++|.++|.+++ +.|++|+++..++|+..|..+|++||||++||... |..|..
T Consensus 263 ------~~~l~eC~~~f~~~e~L~g~d~W~CpkC~~k~ss~K~~~I~~lP~~LII~i~RF~i~-----------V~~~~k 325 (415)
T COG5533 263 ------QLGLQECIDRFYEEEKLEGKDAWRCPKCGRKESSRKRMEILVLPDVLIIHISRFHIS-----------VMGRKK 325 (415)
T ss_pred ------eecHHHHHHHhhhHHhhcCcccccCchhcccccchheEEEEecCceEEEEeeeeeEE-----------eecccc
Confidence 1569999999999999985 89999999999999999999999999999999844 444555
Q ss_pred cccccccCCCCCCCCCCCCCCCCCCcccCCCCCCcHHHHHHHHhcCCChHHHHHHHHHhCCccHHHHHHHhhhcCCCCCC
Q 003583 589 IDISHMRSKGLQPGEELLPEGGPEDEVQSNKPVANKDIVSQLVSMGFNHLHCEKAAVNTSNAGVEEAMNWLLSHMDDPDI 668 (809)
Q Consensus 589 LDL~~~~~~~~~~~e~~l~~~~~~~~~~~~~~~~~~~~~~ql~~mgf~~~~~~~a~~~t~n~~~e~a~~wl~~h~dd~d~ 668 (809)
||+.++.+.... .|...+ ++
T Consensus 326 iD~p~gw~~~~~-~e~~v~----------------------------------------------------------~~- 345 (415)
T COG5533 326 IDTPQGWKNTAS-VEVNVT----------------------------------------------------------LL- 345 (415)
T ss_pred cCCCcchhccCC-ceeccc----------------------------------------------------------cc-
Confidence 666655433110 000000 00
Q ss_pred CCCCccccccccCChhhhhhhhcCCCCHHHHHHHHHHcCCChhhhccccccCCCCCCCcccccccCCCCCCCCCCCCCCC
Q 003583 669 DMPLSQETQCAAIDQSKVETLLSFGFSEEVARNALKASGGDIEKATDWIFNNPDASTSSDMDAATSSTAQTPADAGLPDG 748 (809)
Q Consensus 669 ~~p~~~~~~~~~~~~~~~~~l~~mgf~~~~a~~aL~~~~~~~~~a~dwlfs~~dd~~~~~~~~~~~~~~~~~~~~~~~~~ 748 (809)
|.+ +..--
T Consensus 346 -------------------------------------------------f~~-----------------------~~~~~ 353 (415)
T COG5533 346 -------------------------------------------------FNN-----------------------GIGYI 353 (415)
T ss_pred -------------------------------------------------ccC-----------------------CCCCC
Confidence 000 00112
Q ss_pred CceEEEEEEEeeeccCCCccEEEEEEeeCCcEEEEeCceeecc---cCCCCCceEEEEEEec
Q 003583 749 GGKYRLFGIVSHIGTSTQCGHYVAHILKDGRWAIFNDNKVGAS---VDPPKEMGYLYFFERL 807 (809)
Q Consensus 749 ~~~Y~L~avI~H~G~s~~sGHYva~ikk~~~W~~fND~kV~~~---~~~~~~~~Yi~~Y~R~ 807 (809)
+.+|+|.|||||.|+ ...|||++++++++.|+.|||+.|+.. .+...+.+||+||+|+
T Consensus 354 P~~Y~L~gv~Ch~G~-L~gGHY~s~v~~~~~W~~~dDs~vr~~~~~t~~~~pSsYilFY~r~ 414 (415)
T COG5533 354 PRKYSLLGVVCHNGT-LNGGHYFSEVKRSGTWNVYDDSQVRKGSRTTSGSHPSSYILFYTRS 414 (415)
T ss_pred ccceeEEEEEeecce-ecCceeEEeeeecCceEEechhheeeccceecccCCcceEEEEEec
Confidence 578999999999999 899999999999999999999999855 3456668999999996
No 17
>COG5560 UBP12 Ubiquitin C-terminal hydrolase [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=2.6e-49 Score=430.51 Aligned_cols=330 Identities=25% Similarity=0.423 Sum_probs=265.0
Q ss_pred CcccccccCCChhhHHHHHHHHhchHHHHHHHhcCCchhhhhccCCCCCCccHHHHHHHHHHHHhcCCCCCChhhhhhhh
Q 003583 309 PGYTGLVNLGNSCYLAATMQVMFSTHAFCTRYYTQEPLKAAFEAAPADPTVDLNMQLTKLAHGLLSGKYSVPAQEKDAAA 388 (809)
Q Consensus 309 ~g~~GL~NLGNTCYmNSVLQ~L~~ip~f~~~~l~~~~~~~~~~~~~~~p~~~l~~ql~kL~~~l~sg~ys~~~~~~~~~~ 388 (809)
.|.+||.||||||||||.||||.|++++|+||+...+...+...++..-...+...++.|+..+..+
T Consensus 263 ~GtcGL~NlGNTCyMNSaLQCL~ht~eLrdyFlsdeye~~iNe~Nplgmhg~vAsayadLik~ly~~------------- 329 (823)
T COG5560 263 AGTCGLRNLGNTCYMNSALQCLMHTWELRDYFLSDEYEESINEENPLGMHGSVASAYADLIKQLYDG------------- 329 (823)
T ss_pred ccccceecCCcceecchHHHHHhccHHHHHHhhhhhhHhhhcccCccchhhhHHHHHHHHHHHHhCc-------------
Confidence 3899999999999999999999999999999998877676666555555566777777888877764
Q ss_pred hccccCCCCCCCCChHHHHHHHHhhCCCCCCcccCCHHHHHHHHHHHHHHHhCCC--------C----------------
Q 003583 389 NAATTTDTKQEGIPPRMFKAVIAASHPEFSSMRQQDALEFFLHFVDQVERVHSGK--------P---------------- 444 (809)
Q Consensus 389 ~~~~~~~~~~~~I~P~~f~~~i~~~~~~F~~~~QQDA~EFl~~LLd~L~~~~~~~--------~---------------- 444 (809)
....+.|++|+..||..+.+|+|+.|||++||+.+|||.||+.+++. +
T Consensus 330 --------~~haf~Ps~fK~tIG~fn~~fsGy~QQDSqEFiaflLDgLHEdLnRI~~KpytskPdL~~~d~~~vKk~a~e 401 (823)
T COG5560 330 --------NLHAFTPSGFKKTIGSFNEEFSGYDQQDSQEFIAFLLDGLHEDLNRIIKKPYTSKPDLSPGDDVVVKKKAKE 401 (823)
T ss_pred --------cccccChHHHHHHHhhhHHHhcCccchhHHHHHHHHHHHHHHHHHHhhcCcccCCCCCCCcchHHHHHHHHH
Confidence 56789999999999999999999999999999999999999998621 0
Q ss_pred ---------CCCCcCccceEEEEEEEe-cCCCEeeeeecCeeeeeccCCccccch------------------------H
Q 003583 445 ---------EVDPTKSFKFGIEERISC-PSGKVAYNRRLDYILSLGIPLDEATNK------------------------E 490 (809)
Q Consensus 445 ---------~~~i~~~F~g~l~~~i~C-~C~~vs~~~e~~~~LsL~ip~~~~~~~------------------------~ 490 (809)
.++|+++|.|..++++.| .|+.++.+++||.+|+||+|....-.. .
T Consensus 402 cW~~H~kRNdSiItdLFqgmyKSTL~Cp~C~~vsitfDPfmdlTLPLPvs~vw~htiv~fp~~g~~~pl~iel~~sSt~~ 481 (823)
T COG5560 402 CWWEHLKRNDSIITDLFQGMYKSTLTCPGCGSVSITFDPFMDLTLPLPVSMVWKHTIVVFPESGRRQPLKIELDASSTIR 481 (823)
T ss_pred HHHHHHhcCcccHHHHHHHHhhceeeccCcCceeeeecchhhccccCchhhcccccEEEECCCCCCCceEEEEeccchHH
Confidence 178999999999999999 999999999999999999997543000 0
Q ss_pred HHHH-----------------------------------------------HH--------------------HHH----
Q 003583 491 ELAA-----------------------------------------------FQ--------------------KLK---- 499 (809)
Q Consensus 491 ~~~~-----------------------------------------------~~--------------------~~~---- 499 (809)
.++. |+ .+.
T Consensus 482 ~lk~lv~~~~gk~gc~ei~v~~iy~g~~y~~l~~~dk~ll~~I~~~d~vylYe~~~ngi~vpvvh~~~~~gYks~rlFg~ 561 (823)
T COG5560 482 GLKKLVDAEYGKLGCFEIKVMCIYYGGNYNMLEPADKVLLQDIPQTDFVYLYETNDNGIEVPVVHLRIEKGYKSKRLFGD 561 (823)
T ss_pred HHHHHHHHHhccCCccceeEEEEEeccchhhcchhhHHHHhhcCccceEEEeecCCCCeEEEEEeccccccccchhhhCC
Confidence 0000 00 000
Q ss_pred ------------------H------hhhcc------------------------------------------CCCCCc--
Q 003583 500 ------------------M------ERISE------------------------------------------GKDVTN-- 511 (809)
Q Consensus 500 ------------------~------~~~~~------------------------------------------g~~~~~-- 511 (809)
+ ..... |+...+
T Consensus 562 pflqlnv~~~~~i~~kLvkE~~ell~~v~~k~tdvd~~~~q~~l~r~es~p~~wl~l~teid~kree~veeE~~~n~nd~ 641 (823)
T COG5560 562 PFLQLNVLIKASIYDKLVKEFEELLVLVEMKKTDVDLVSEQVRLLREESSPSSWLKLETEIDTKREEQVEEEGQMNFNDA 641 (823)
T ss_pred cceEEEeecchhhHHHHHHHHHHHHHHHhhcchhhhhhhhhccchhcccCcchhhhhhhhccchhhhhhhhhhccCCCcc
Confidence 0 00000 000000
Q ss_pred ------------------------cc--ccCCCccHHHHHhhhcCCcccC---cccCCCCCCccceeEEeeccccCceeE
Q 003583 512 ------------------------EE--IVRPRVPLEACLSTFSAPEELP---DFYSTALKAKTTATKSAGLTSFPDYLV 562 (809)
Q Consensus 512 ------------------------~~--~~~~~~sL~~cL~~f~~~E~le---~~~C~~C~~~~~a~k~~~i~~lP~vLi 562 (809)
.+ ...+++||++||..|.++|.+. .++|+.|+....|+|+.-|.++|.+|+
T Consensus 642 vvi~cew~ek~y~~lFsy~~lw~~~ei~~~~rtiTL~dCl~eFskpEqLgl~DswyCpgCkefrqasKqmelwrlP~iLi 721 (823)
T COG5560 642 VVISCEWEEKRYLSLFSYDPLWTIREIGAAERTITLQDCLNEFSKPEQLGLSDSWYCPGCKEFRQASKQMELWRLPMILI 721 (823)
T ss_pred eEEeeeccccchhhhhcCCccchhHHhhhccCCCcHHHHHHHhccHhhcCCcccccCCchHhhhhhhhhhhhhcCChhee
Confidence 00 0136799999999999999986 389999999999999999999999999
Q ss_pred EEEeeEEEccCceeeeceeeecCC-CccccccccCCCCCCCCCCCCCCCCCCcccCCCCCCcHHHHHHHHhcCCChHHHH
Q 003583 563 LHMRKFVMEAGWVPKKLDVYIDVP-DIIDISHMRSKGLQPGEELLPEGGPEDEVQSNKPVANKDIVSQLVSMGFNHLHCE 641 (809)
Q Consensus 563 I~LkRF~~~~~~~~~Ki~~~V~fP-~~LDL~~~~~~~~~~~e~~l~~~~~~~~~~~~~~~~~~~~~~ql~~mgf~~~~~~ 641 (809)
||||||... +..+.|++.-|.|| ..|||+.+...-
T Consensus 722 ihLkRFss~-rsfrdKiddlVeyPiddldLs~~~~~~------------------------------------------- 757 (823)
T COG5560 722 IHLKRFSSV-RSFRDKIDDLVEYPIDDLDLSGVEYMV------------------------------------------- 757 (823)
T ss_pred eehhhhhhc-ccchhhhhhhhccccccccccceEEee-------------------------------------------
Confidence 999999976 56678999999999 679999774331
Q ss_pred HHHHHhCCccHHHHHHHhhhcCCCCCCCCCCccccccccCChhhhhhhhcCCCCHHHHHHHHHHcCCChhhhccccccCC
Q 003583 642 KAAVNTSNAGVEEAMNWLLSHMDDPDIDMPLSQETQCAAIDQSKVETLLSFGFSEEVARNALKASGGDIEKATDWIFNNP 721 (809)
Q Consensus 642 ~a~~~t~n~~~e~a~~wl~~h~dd~d~~~p~~~~~~~~~~~~~~~~~l~~mgf~~~~a~~aL~~~~~~~~~a~dwlfs~~ 721 (809)
+||
T Consensus 758 ----------------------~~p------------------------------------------------------- 760 (823)
T COG5560 758 ----------------------DDP------------------------------------------------------- 760 (823)
T ss_pred ----------------------cCc-------------------------------------------------------
Confidence 011
Q ss_pred CCCCCcccccccCCCCCCCCCCCCCCCCceEEEEEEEeeeccCCCccEEEEEEee--CCcEEEEeCceeecccC--CCCC
Q 003583 722 DASTSSDMDAATSSTAQTPADAGLPDGGGKYRLFGIVSHIGTSTQCGHYVAHILK--DGRWAIFNDNKVGASVD--PPKE 797 (809)
Q Consensus 722 dd~~~~~~~~~~~~~~~~~~~~~~~~~~~~Y~L~avI~H~G~s~~sGHYva~ikk--~~~W~~fND~kV~~~~~--~~~~ 797 (809)
.-.|.|+||=.|.|. +.+|||+||+|+ ++.||+|||.+|+.+.. ....
T Consensus 761 ---------------------------~liydlyavDNHygg-lsgGHYtAyarn~~n~~wy~fdDsritevdped~vts 812 (823)
T COG5560 761 ---------------------------RLIYDLYAVDNHYGG-LSGGHYTAYARNFANNGWYLFDDSRITEVDPEDSVTS 812 (823)
T ss_pred ---------------------------ceEEEeeeccccccc-cCCcceeeeeecccCCceEEecCccccccCccccccc
Confidence 246999999999999 899999999998 88999999999998854 4589
Q ss_pred ceEEEEEEecC
Q 003583 798 MGYLYFFERLN 808 (809)
Q Consensus 798 ~~Yi~~Y~R~~ 808 (809)
.||+|||+|..
T Consensus 813 saYvLFyrrk~ 823 (823)
T COG5560 813 SAYVLFYRRKS 823 (823)
T ss_pred eeEEEEEEecC
Confidence 99999999963
No 18
>cd02662 Peptidase_C19F A subfamily of Peptidase C19. Peptidase C19 contains ubiquitinyl hydrolases. They are intracellular peptidases that remove ubiquitin molecules from polyubiquinated peptides by cleavage of isopeptide bonds. They hydrolyze bonds involving the carboxyl group of the C-terminal Gly residue of ubiquitin. The purpose of the de-ubiquitination is thought to be editing of the ubiquitin conjugates, which could rescue them from degradation, as well as recycling of the ubiquitin. The ubiquitin/proteasome system is responsible for most protein turnover in the mammalian cell, and with over 50 members, family C19 is one of the largest families of peptidases in the human genome.
Probab=100.00 E-value=4.6e-47 Score=398.11 Aligned_cols=156 Identities=25% Similarity=0.411 Sum_probs=139.4
Q ss_pred ccccCCChhhHHHHHHHHhchHHHHHHHhcCCchhhhhccCCCCCCccHHHHHHHHHHHHhcCCCCCChhhhhhhhhccc
Q 003583 313 GLVNLGNSCYLAATMQVMFSTHAFCTRYYTQEPLKAAFEAAPADPTVDLNMQLTKLAHGLLSGKYSVPAQEKDAAANAAT 392 (809)
Q Consensus 313 GL~NLGNTCYmNSVLQ~L~~ip~f~~~~l~~~~~~~~~~~~~~~p~~~l~~ql~kL~~~l~sg~ys~~~~~~~~~~~~~~ 392 (809)
||+|+||||||||+||+|+++|+||+++...
T Consensus 1 Gl~N~g~tCy~ns~lQ~L~~~~~f~~~~~~~------------------------------------------------- 31 (240)
T cd02662 1 GLVNLGNTCFMNSVLQALASLPSLIEYLEEF------------------------------------------------- 31 (240)
T ss_pred CCcCCCCccHHHHHHHHHHCCHHHHHHHHHH-------------------------------------------------
Confidence 8999999999999999999999999987510
Q ss_pred cCCCCCCCCChHHHHHHHHhhCCCCCCcccCCHHHHHHHHHHHHHHHhCCCCCCCCcCccceEEEEEEEe-cCCCEee-e
Q 003583 393 TTDTKQEGIPPRMFKAVIAASHPEFSSMRQQDALEFFLHFVDQVERVHSGKPEVDPTKSFKFGIEERISC-PSGKVAY-N 470 (809)
Q Consensus 393 ~~~~~~~~I~P~~f~~~i~~~~~~F~~~~QQDA~EFl~~LLd~L~~~~~~~~~~~i~~~F~g~l~~~i~C-~C~~vs~-~ 470 (809)
. +||||+|||++||+.|+. .+.++|.|.+.++++| .|+.++. +
T Consensus 32 ----~-----------------------~QqDa~EFl~~ll~~l~~--------~i~~~F~g~~~~~i~C~~C~~~s~~~ 76 (240)
T cd02662 32 ----L-----------------------EQQDAHELFQVLLETLEQ--------LLKFPFDGLLASRIVCLQCGESSKVR 76 (240)
T ss_pred ----H-----------------------hhcCHHHHHHHHHHHHHH--------hccCccccEEEEEEEeCCCCCccCcc
Confidence 0 799999999999999993 4668999999999999 9999866 4
Q ss_pred eecCeeeeeccCCccccchHHHHHHHHHHHhhhccCCCCCcccccCCCccHHHHHhhhcCCcccCcccCCCCCCccceeE
Q 003583 471 RRLDYILSLGIPLDEATNKEELAAFQKLKMERISEGKDVTNEEIVRPRVPLEACLSTFSAPEELPDFYSTALKAKTTATK 550 (809)
Q Consensus 471 ~e~~~~LsL~ip~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~sL~~cL~~f~~~E~le~~~C~~C~~~~~a~k 550 (809)
.+++++|+|+||.... .+..+|++||+.|+.+|.+++|.|++|
T Consensus 77 ~e~f~~LsL~ip~~~~-----------------------------~~~~sl~~~L~~~~~~E~l~~~~C~~C-------- 119 (240)
T cd02662 77 YESFTMLSLPVPNQSS-----------------------------GSGTTLEHCLDDFLSTEIIDDYKCDRC-------- 119 (240)
T ss_pred eeeeeeeEecccccCC-----------------------------CCCCCHHHHHHHhcCcccccCcCCCCC--------
Confidence 8999999999986431 122699999999999999999999999
Q ss_pred EeeccccCceeEEEEeeEEEccCceeeeceeeecCCCcc
Q 003583 551 SAGLTSFPDYLVLHMRKFVMEAGWVPKKLDVYIDVPDII 589 (809)
Q Consensus 551 ~~~i~~lP~vLiI~LkRF~~~~~~~~~Ki~~~V~fP~~L 589 (809)
+..|.++|+||+|||+||.++..|..+|++++|.||+.|
T Consensus 120 ~~~i~~lP~vLii~LkRF~~~~~~~~~K~~~~v~fp~~l 158 (240)
T cd02662 120 QTVIVRLPQILCIHLSRSVFDGRGTSTKNSCKVSFPERL 158 (240)
T ss_pred eEEeecCCcEEEEEEEEEEEcCCCceeeeccEEECCCcc
Confidence 678999999999999999999558899999999999876
No 19
>KOG1867 consensus Ubiquitin-specific protease [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=6.3e-47 Score=426.07 Aligned_cols=417 Identities=21% Similarity=0.334 Sum_probs=317.1
Q ss_pred CCCccccccCC-CCCeEE-ecccCcccccCCcCCCCCCCchHhhHhhhcCccEEEeeCccccCCCCcEEEeccCCCcccc
Q 003583 179 PSGWKCAKCDK-RDNLWL-NLTDGMILCGRRNWDGTGGNNHAVEHYKETGYPLAVKLGTITSDLEGADVFSYPEDDSVVD 256 (809)
Q Consensus 179 ~~~~~C~~C~~-~~~lw~-CL~Cg~~~Cgr~~~~g~~gn~ha~~H~~~~~H~~~v~lgtit~~~~~~~v~cy~cd~~v~d 256 (809)
...+.|..|.. ...+.. |+.|+.++|- .+.|...|....+|-..+.+ ..+..||++|+++|++
T Consensus 41 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--------~~~~~~~~~~~~~~~~~~~~-------~~g~~~~~~c~~~i~~ 105 (492)
T KOG1867|consen 41 LKTINCGTCGVLQIRLAVPCLICDSLGCL--------SNSHKLEHSGNKKHNNTIDV-------NNGLLYCFACPDFIYD 105 (492)
T ss_pred cccceeEEechhhhhhcccceechhcccc--------ccccccccccccccccccee-------ehhhheeccCCcEeec
Confidence 34567888874 344555 8999999993 34688888888888887744 4889999999999988
Q ss_pred hhHH---HHHHhhccccccccccccchhhhhhhccccccccccc---cCCCccccccCCcccccccCCChhhHHHHHHHH
Q 003583 257 PLLA---QHLAFFGIDFSSLQKTEMTTAERELDQNTNFDWNRIQ---ESGQDVEPLFGPGYTGLVNLGNSCYLAATMQVM 330 (809)
Q Consensus 257 ~~l~---~~L~~~gi~~~~~~kteksl~el~~~~n~~~e~~~~~---e~g~~l~p~~~~g~~GL~NLGNTCYmNSVLQ~L 330 (809)
..+. .++..+ ...+.+-...+.....+ ....-..+. ..+......+.-+++||+|+||||+||++||+|
T Consensus 106 ~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~--~~~~~~t~~~~~~~~~~~~~~~~~~l~g~~n~g~tcfmn~ilqsl 180 (492)
T KOG1867|consen 106 AELLKLADIKKYK---EQPFHQLDSTLLTHLAE--ATVCQQTLLKENPKDRLVLSTTALGLRGLRNLGSTCFMNVILQSL 180 (492)
T ss_pred cchhhHHHHHhhh---ccchhhccchhhhhhhh--hhccchhcccCCcccccccceeeecccccccccHHHHHHHHHHHh
Confidence 5443 333222 00000100000000000 000000000 000111223556899999999999999999999
Q ss_pred hchHHHHHHHhcCCchhhhhccCCCCC-CccHHHHHHHHHHHHhcCCCCCChhhhhhhhhccccCCCCCCCCChHHHHHH
Q 003583 331 FSTHAFCTRYYTQEPLKAAFEAAPADP-TVDLNMQLTKLAHGLLSGKYSVPAQEKDAAANAATTTDTKQEGIPPRMFKAV 409 (809)
Q Consensus 331 ~~ip~f~~~~l~~~~~~~~~~~~~~~p-~~~l~~ql~kL~~~l~sg~ys~~~~~~~~~~~~~~~~~~~~~~I~P~~f~~~ 409 (809)
.+.+..+...+...+. +.+..+ ..++.+.+.+++..+++| ..+.++.|..+++.
T Consensus 181 ~~~~~~~~~~l~~~h~-----~~~~~~~~~~l~~~~~~~~~~~~s~--------------------~~~~~~sp~~~l~~ 235 (492)
T KOG1867|consen 181 LHDPLSRSSFLSGIHS-----KEPSSSGSSCLVCDLDRLFQALYSG--------------------HNRTPYSPFELLNL 235 (492)
T ss_pred hccchhhccchhhhcc-----cCCCCCCCcchhhhhhhhhhHhhcC--------------------CCCCCcChHHHHHH
Confidence 9999999988865432 344455 789999999999999997 22789999999999
Q ss_pred HHhhCCCCCCcccCCHHHHHHHHHHHHHHHhC---------CCC---CCCCcCccceEEEEEEEe-cCCCEeeeeecCee
Q 003583 410 IAASHPEFSSMRQQDALEFFLHFVDQVERVHS---------GKP---EVDPTKSFKFGIEERISC-PSGKVAYNRRLDYI 476 (809)
Q Consensus 410 i~~~~~~F~~~~QQDA~EFl~~LLd~L~~~~~---------~~~---~~~i~~~F~g~l~~~i~C-~C~~vs~~~e~~~~ 476 (809)
+|+..|.|.+++||||+||+..+++.++++.+ ... ..+++.+|.|.+.+.++| .|+..+.+.++|++
T Consensus 236 ~~k~~~~~~g~~Qqda~eF~~~~~~~~~~~~~~~~k~~~~~~~~~~c~~iv~~~F~G~L~~~v~c~~c~~~S~~~dpf~d 315 (492)
T KOG1867|consen 236 VWKHSPNLAGYEQQDAHEFLIALLDRLHREKDDCGKSLIASQSNKQCPCIVHTIFSGTLQSDVTCQTCGSKSTTYDPFMD 315 (492)
T ss_pred HHHhCcccccccccchHHHHHHhcccccccccccccccccccCCcccccccceeecceeccceeehhhcceeeeccCccc
Confidence 99999999999999999999999999999871 111 357889999999999999 99999999999999
Q ss_pred eeeccCCccccchHHHHHHHHHHHhhhccCCCCCcccccCCCccHHHHHhhhcCCcccC---cccCCCCCCccceeEEee
Q 003583 477 LSLGIPLDEATNKEELAAFQKLKMERISEGKDVTNEEIVRPRVPLEACLSTFSAPEELP---DFYSTALKAKTTATKSAG 553 (809)
Q Consensus 477 LsL~ip~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~sL~~cL~~f~~~E~le---~~~C~~C~~~~~a~k~~~ 553 (809)
|+|.||..-.... ...+..++.+||+.|...+... ++.|..|+.++.++|+..
T Consensus 316 isL~i~~~~~~~~------------------------~~~~~~~~~~cl~~~~~~~~~~~~~~~~c~~c~~~~~~~kql~ 371 (492)
T KOG1867|consen 316 ISLDIPDQFTSSS------------------------VRSPELTLLDCLDRFTRSEQLGKDSKYKCSSCKSKQESTKQLT 371 (492)
T ss_pred eeeecchhccCcc------------------------cccchhhhhhhhhhhhhhhhcCcccccccCCcccccccccccc
Confidence 9999986432110 0011257999999999888744 489999999999999999
Q ss_pred ccccCceeEEEEeeEEEccCceeeeceeeecCCCccccccccCCCCCCCCCCCCCCCCCCcccCCCCCCcHHHHHHHHhc
Q 003583 554 LTSFPDYLVLHMRKFVMEAGWVPKKLDVYIDVPDIIDISHMRSKGLQPGEELLPEGGPEDEVQSNKPVANKDIVSQLVSM 633 (809)
Q Consensus 554 i~~lP~vLiI~LkRF~~~~~~~~~Ki~~~V~fP~~LDL~~~~~~~~~~~e~~l~~~~~~~~~~~~~~~~~~~~~~ql~~m 633 (809)
|.++|.+|.+|++||.+.......|++++|.||..|+|.+|+.....+ .
T Consensus 372 ~~~lP~~l~~~lkRfe~~~~~~~~ki~~~v~fp~~l~m~p~~~~~~~~------~------------------------- 420 (492)
T KOG1867|consen 372 IRKLPAVLCLHLKRFEHSATGAREKIDSYVSFPVLLNMKPYCSSEKLK------S------------------------- 420 (492)
T ss_pred cccCCceeeeeeccccccccccccccCcccccchhhcCCccccccccc------c-------------------------
Confidence 999999999999999998655555999999999999999998751100 0
Q ss_pred CCChHHHHHHHHHhCCccHHHHHHHhhhcCCCCCCCCCCccccccccCChhhhhhhhcCCCCHHHHHHHHHHcCCChhhh
Q 003583 634 GFNHLHCEKAAVNTSNAGVEEAMNWLLSHMDDPDIDMPLSQETQCAAIDQSKVETLLSFGFSEEVARNALKASGGDIEKA 713 (809)
Q Consensus 634 gf~~~~~~~a~~~t~n~~~e~a~~wl~~h~dd~d~~~p~~~~~~~~~~~~~~~~~l~~mgf~~~~a~~aL~~~~~~~~~a 713 (809)
T Consensus 421 -------------------------------------------------------------------------------- 420 (492)
T KOG1867|consen 421 -------------------------------------------------------------------------------- 420 (492)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred ccccccCCCCCCCcccccccCCCCCCCCCCCCCCCCceEEEEEEEeeeccCCCccEEEEEEeeCCcEEEEeCceeeccc-
Q 003583 714 TDWIFNNPDASTSSDMDAATSSTAQTPADAGLPDGGGKYRLFGIVSHIGTSTQCGHYVAHILKDGRWAIFNDNKVGASV- 792 (809)
Q Consensus 714 ~dwlfs~~dd~~~~~~~~~~~~~~~~~~~~~~~~~~~~Y~L~avI~H~G~s~~sGHYva~ikk~~~W~~fND~kV~~~~- 792 (809)
.+..+..|+|.|||+|+|+ +++||||||.|..+.||.|||.+|+.+.
T Consensus 421 -------------------------------~~~~~~~Y~L~AVV~H~G~-~~SGHY~aY~r~~~~~~~~dDs~v~~~s~ 468 (492)
T KOG1867|consen 421 -------------------------------QDNPDHLYELRAVVVHHGT-VGSGHYVAYRRQSGGWFKCDDSTVTKVSE 468 (492)
T ss_pred -------------------------------CCCCCceEEEEEEEEeccC-CCCCceEEEEEeCCCcEEEcCeEEEEeeH
Confidence 0011467999999999999 9999999999999999999999999874
Q ss_pred -CCCCCceEEEEEEec
Q 003583 793 -DPPKEMGYLYFFERL 807 (809)
Q Consensus 793 -~~~~~~~Yi~~Y~R~ 807 (809)
++....||++||.+.
T Consensus 469 ~eVl~~~aylLFY~~~ 484 (492)
T KOG1867|consen 469 EEVLSSQAYLLFYTQE 484 (492)
T ss_pred HHhhhchhhheehhHH
Confidence 578899999999864
No 20
>KOG1868 consensus Ubiquitin C-terminal hydrolase [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=5.8e-44 Score=408.17 Aligned_cols=303 Identities=28% Similarity=0.441 Sum_probs=249.5
Q ss_pred CCcccccccCCChhhHHHHHHHHhchHHHHHHHhcCCchhhhhccCCCCCCccHHHHHHHHHHHHhcCCCCCChhhhhhh
Q 003583 308 GPGYTGLVNLGNSCYLAATMQVMFSTHAFCTRYYTQEPLKAAFEAAPADPTVDLNMQLTKLAHGLLSGKYSVPAQEKDAA 387 (809)
Q Consensus 308 ~~g~~GL~NLGNTCYmNSVLQ~L~~ip~f~~~~l~~~~~~~~~~~~~~~p~~~l~~ql~kL~~~l~sg~ys~~~~~~~~~ 387 (809)
+.+.+||.|+|||||||++||||++++.|+..|+...+...+. .........+...+.+++..++.+
T Consensus 298 ~~~~~GL~NlGntC~mn~ilQCl~~t~~lr~~~L~~~~~~~i~-~~~~~~~~~l~~~~~~~l~~~~~~------------ 364 (653)
T KOG1868|consen 298 VFGCPGLRNLGNTCFMNSILQCLFSTGELRDNFLSIKLPQFIN-LDLFFGAEELESACAKLLQKLWHG------------ 364 (653)
T ss_pred ccCCceeccCCcchHHHHHHHHHhhccccchhhhhHHHHHHcc-cCCcccchhHHHHHHHhhhhhccC------------
Confidence 4688999999999999999999999999998888755333332 123345556777888888777765
Q ss_pred hhccccCCCCCCCCChHHHHHHHHhhCCCCCCcccCCHHHHHHHHHHHHHHHhCCCCC----------------------
Q 003583 388 ANAATTTDTKQEGIPPRMFKAVIAASHPEFSSMRQQDALEFFLHFVDQVERVHSGKPE---------------------- 445 (809)
Q Consensus 388 ~~~~~~~~~~~~~I~P~~f~~~i~~~~~~F~~~~QQDA~EFl~~LLd~L~~~~~~~~~---------------------- 445 (809)
.....+.|+.|+..+.+..+.|+++.||||+||+.++++.||+++.....
T Consensus 365 --------~~~~s~~P~~f~~~~~~y~~~~~~~~Qqd~qEfl~~lld~Lhe~ln~~~~~~~~~p~~~~~~~~~~~~~~s~ 436 (653)
T KOG1868|consen 365 --------HGQFSVLPRRFIRVLKRYSPNFSGYSQQDAQEFLIFLLDRLHEELNENTRPLKLSPLMGSYLLSELELSDSK 436 (653)
T ss_pred --------CCceecCcHHHHHHHhhcccccccccccchHHHHHHHHHhhhHhhhccCCCCccCccccccccccccccccc
Confidence 35667999999999999999999999999999999999999998854210
Q ss_pred --------------CCCcCccceEEEEEEEe-cCCCEeeeeecCeeeeeccCCccccchHHHHHHHHHHHhhhccCCCCC
Q 003583 446 --------------VDPTKSFKFGIEERISC-PSGKVAYNRRLDYILSLGIPLDEATNKEELAAFQKLKMERISEGKDVT 510 (809)
Q Consensus 446 --------------~~i~~~F~g~l~~~i~C-~C~~vs~~~e~~~~LsL~ip~~~~~~~~~~~~~~~~~~~~~~~g~~~~ 510 (809)
..+.++|.|++++.++| .|+.+++++++|.+|+|+||......
T Consensus 437 ~s~~~w~~~~~~~d~~i~~lf~gQ~ks~Lkc~~cg~~s~t~~~f~~lslpIp~~~~~~---------------------- 494 (653)
T KOG1868|consen 437 KSLAEWLRYLEEEDSKIGDLFVGQLKSYLKCQACGYTSTTFETFTDLSLPIPKKGFAG---------------------- 494 (653)
T ss_pred hhHHHHHhhccccchHHHHHHHHHHHhheehhhcCCcceeeecceeeEEecccccccc----------------------
Confidence 23678999999999999 99999999999999999999754321
Q ss_pred cccccCCCccHHHHHhhhcCCcccCc---ccCCCCCCcccee--EEeeccccCceeEEEEeeEEEccCceeeeceeeecC
Q 003583 511 NEEIVRPRVPLEACLSTFSAPEELPD---FYSTALKAKTTAT--KSAGLTSFPDYLVLHMRKFVMEAGWVPKKLDVYIDV 585 (809)
Q Consensus 511 ~~~~~~~~~sL~~cL~~f~~~E~le~---~~C~~C~~~~~a~--k~~~i~~lP~vLiI~LkRF~~~~~~~~~Ki~~~V~f 585 (809)
.+++|++|++.|+..|.+++ +.|+.|+.+.... |+..|.+||++|+|||+||..+.+| ..|...-|+|
T Consensus 495 ------~~~~L~~C~~~ft~~ekle~~~~w~Cp~c~~~~~~~~lK~~~i~~lp~iLiihL~Rf~~~~~~-~~k~~~~v~~ 567 (653)
T KOG1868|consen 495 ------GKVSLEDCLSLFTKEEKLEGDEAWLCPRCKHKESSKTLKKLTILRLPKILIIHLKRFSSDGNS-FNKLSTGVDF 567 (653)
T ss_pred ------cccchHhhhccccchhhcccccccCCccccCcccccccceeeeecCCHHHHHHHHHhccCccc-ccccceeecc
Confidence 14799999999999999997 9999999998885 9999999999999999999998545 4688889999
Q ss_pred CC-ccccccccCCCCCCCCCCCCCCCCCCcccCCCCCCcHHHHHHHHhcCCChHHHHHHHHHhCCccHHHHHHHhhhcCC
Q 003583 586 PD-IIDISHMRSKGLQPGEELLPEGGPEDEVQSNKPVANKDIVSQLVSMGFNHLHCEKAAVNTSNAGVEEAMNWLLSHMD 664 (809)
Q Consensus 586 P~-~LDL~~~~~~~~~~~e~~l~~~~~~~~~~~~~~~~~~~~~~ql~~mgf~~~~~~~a~~~t~n~~~e~a~~wl~~h~d 664 (809)
|. .+|+.++...
T Consensus 568 ~~~~~~~~~~~~~------------------------------------------------------------------- 580 (653)
T KOG1868|consen 568 PLREADLSPRFAE------------------------------------------------------------------- 580 (653)
T ss_pred chHhhhhchhccc-------------------------------------------------------------------
Confidence 85 3444432110
Q ss_pred CCCCCCCCccccccccCChhhhhhhhcCCCCHHHHHHHHHHcCCChhhhccccccCCCCCCCcccccccCCCCCCCCCCC
Q 003583 665 DPDIDMPLSQETQCAAIDQSKVETLLSFGFSEEVARNALKASGGDIEKATDWIFNNPDASTSSDMDAATSSTAQTPADAG 744 (809)
Q Consensus 665 d~d~~~p~~~~~~~~~~~~~~~~~l~~mgf~~~~a~~aL~~~~~~~~~a~dwlfs~~dd~~~~~~~~~~~~~~~~~~~~~ 744 (809)
T Consensus 581 -------------------------------------------------------------------------------- 580 (653)
T KOG1868|consen 581 -------------------------------------------------------------------------------- 580 (653)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred CCCCCceEEEEEEEeeeccCCCccEEEEEEee--CCcEEEEeCceeecccC--CCCCceEEEEEEecC
Q 003583 745 LPDGGGKYRLFGIVSHIGTSTQCGHYVAHILK--DGRWAIFNDNKVGASVD--PPKEMGYLYFFERLN 808 (809)
Q Consensus 745 ~~~~~~~Y~L~avI~H~G~s~~sGHYva~ikk--~~~W~~fND~kV~~~~~--~~~~~~Yi~~Y~R~~ 808 (809)
..+....|+|+|||+|.|+ ..+|||+||+++ .++|+.|||+.|+...+ .....|||+||.|.+
T Consensus 581 ~~~~~~~Y~L~aVv~H~Gt-l~sGHYta~~~~~~~~~W~~fdDs~Vs~~~~~~~~~s~aYIlFY~~~~ 647 (653)
T KOG1868|consen 581 KGNNPKSYRLYAVVNHSGT-LNSGHYTAYVYKNEKQRWFTFDDSEVSPISETDVGSSSAYILFYERLG 647 (653)
T ss_pred cCCCccceeeEEEEeccCc-ccCCceEEEEeecCCCceEEecCeeeeccccccccCCCceEEEeecCC
Confidence 0012345999999999995 999999999998 48999999999996644 446889999999975
No 21
>cd02674 Peptidase_C19R A subfamily of peptidase C19. Peptidase C19 contains ubiquitinyl hydrolases. They are intracellular peptidases that remove ubiquitin molecules from polyubiquinated peptides by cleavage of isopeptide bonds. They hydrolyze bonds involving the carboxyl group of the C-terminal Gly residue of ubiquitin. The purpose of the de-ubiquitination is thought to be editing of the ubiquitin conjugates, which could rescue them from degradation, as well as recycling of the ubiquitin. The ubiquitin/proteasome system is responsible for most protein turnover in the mammalian cell, and with over 50 members, family C19 is one of the largest families of peptidases in the human genome.
Probab=100.00 E-value=4.7e-43 Score=365.48 Aligned_cols=201 Identities=29% Similarity=0.487 Sum_probs=174.8
Q ss_pred ccCCHHHHHHHHHHHHHHHhCCCCCCCCcCccceEEEEEEEe-cCCCEeeeeecCeeeeeccCCccccchHHHHHHHHHH
Q 003583 421 RQQDALEFFLHFVDQVERVHSGKPEVDPTKSFKFGIEERISC-PSGKVAYNRRLDYILSLGIPLDEATNKEELAAFQKLK 499 (809)
Q Consensus 421 ~QQDA~EFl~~LLd~L~~~~~~~~~~~i~~~F~g~l~~~i~C-~C~~vs~~~e~~~~LsL~ip~~~~~~~~~~~~~~~~~ 499 (809)
.||||+||+++||+.|+ +.+.++|+|.+.++++| .|+..+.+.++++.|+|+||.....
T Consensus 21 ~QqDa~Ef~~~ll~~l~--------~~i~~~F~~~~~~~~~C~~C~~~~~~~e~~~~l~l~ip~~~~~------------ 80 (230)
T cd02674 21 DQQDAQEFLLFLLDGLH--------SIIVDLFQGQLKSRLTCLTCGKTSTTFEPFTYLSLPIPSGSGD------------ 80 (230)
T ss_pred hhhhHHHHHHHHHHHHh--------hhHHheeCCEEeCcEEcCCCcCCcceecceeEEEEecccccCC------------
Confidence 59999999999999999 25789999999999999 9999999999999999999864310
Q ss_pred HhhhccCCCCCcccccCCCccHHHHHhhhcCCcccCc---ccCCCCCCccceeEEeeccccCceeEEEEeeEEEccCcee
Q 003583 500 MERISEGKDVTNEEIVRPRVPLEACLSTFSAPEELPD---FYSTALKAKTTATKSAGLTSFPDYLVLHMRKFVMEAGWVP 576 (809)
Q Consensus 500 ~~~~~~g~~~~~~~~~~~~~sL~~cL~~f~~~E~le~---~~C~~C~~~~~a~k~~~i~~lP~vLiI~LkRF~~~~~~~~ 576 (809)
.+..+|++||+.|+.++.+++ +.|++|++++.+.++.+|.++|++|+|||+||.++ .+..
T Consensus 81 ----------------~~~~sl~~~L~~~~~~e~~~~~~~~~C~~C~~~~~~~~~~~i~~lP~iLii~l~R~~~~-~~~~ 143 (230)
T cd02674 81 ----------------APKVTLEDCLRLFTKEETLDGDNAWKCPKCKKKRKATKKLTISRLPKVLIIHLKRFSFS-RGST 143 (230)
T ss_pred ----------------CCCCCHHHHHHHhcCccccCCCCceeCCCCCCccceEEEEEEecCChhhEeEhhheecC-CCCc
Confidence 234799999999999999875 89999999999999999999999999999999998 4778
Q ss_pred eeceeeecCCC-ccccccccCCCCCCCCCCCCCCCCCCcccCCCCCCcHHHHHHHHhcCCChHHHHHHHHHhCCccHHHH
Q 003583 577 KKLDVYIDVPD-IIDISHMRSKGLQPGEELLPEGGPEDEVQSNKPVANKDIVSQLVSMGFNHLHCEKAAVNTSNAGVEEA 655 (809)
Q Consensus 577 ~Ki~~~V~fP~-~LDL~~~~~~~~~~~e~~l~~~~~~~~~~~~~~~~~~~~~~ql~~mgf~~~~~~~a~~~t~n~~~e~a 655 (809)
.|++..|.||. .|||.+|+...
T Consensus 144 ~K~~~~v~~~~~~l~l~~~~~~~--------------------------------------------------------- 166 (230)
T cd02674 144 RKLTTPVTFPLNDLDLTPYVDTR--------------------------------------------------------- 166 (230)
T ss_pred ccCCceEeccccccccccccCcc---------------------------------------------------------
Confidence 89999999995 68988774110
Q ss_pred HHHhhhcCCCCCCCCCCccccccccCChhhhhhhhcCCCCHHHHHHHHHHcCCChhhhccccccCCCCCCCcccccccCC
Q 003583 656 MNWLLSHMDDPDIDMPLSQETQCAAIDQSKVETLLSFGFSEEVARNALKASGGDIEKATDWIFNNPDASTSSDMDAATSS 735 (809)
Q Consensus 656 ~~wl~~h~dd~d~~~p~~~~~~~~~~~~~~~~~l~~mgf~~~~a~~aL~~~~~~~~~a~dwlfs~~dd~~~~~~~~~~~~ 735 (809)
T Consensus 167 -------------------------------------------------------------------------------- 166 (230)
T cd02674 167 -------------------------------------------------------------------------------- 166 (230)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred CCCCCCCCCCCCCCceEEEEEEEeeeccCCCccEEEEEEeeC--CcEEEEeCceeecccC--CCCCceEEEEEE
Q 003583 736 TAQTPADAGLPDGGGKYRLFGIVSHIGTSTQCGHYVAHILKD--GRWAIFNDNKVGASVD--PPKEMGYLYFFE 805 (809)
Q Consensus 736 ~~~~~~~~~~~~~~~~Y~L~avI~H~G~s~~sGHYva~ikk~--~~W~~fND~kV~~~~~--~~~~~~Yi~~Y~ 805 (809)
......+|+|+|||+|.|.. .+|||+||+|.. ++|++|||+.|+.+.. .....||||||+
T Consensus 167 ---------~~~~~~~Y~L~~vI~H~G~~-~~GHY~~~~~~~~~~~W~~fnD~~V~~i~~~~~~~~~~YlL~Y~ 230 (230)
T cd02674 167 ---------SFTGPFKYDLYAVVNHYGSL-NGGHYTAYCKNNETNDWYKFDDSRVTKVSESSVVSSSAYILFYE 230 (230)
T ss_pred ---------cCCCCceEEEEEEEEeeCCC-CCcEEEEEEECCCCCceEEEcCCeEEEcCHHHccCCCceEEEeC
Confidence 00124679999999999996 999999999985 8999999999997743 468899999996
No 22
>cd02673 Peptidase_C19Q A subfamily of Peptidase C19. Peptidase C19 contains ubiquitinyl hydrolases. They are intracellular peptidases that remove ubiquitin molecules from polyubiquinated peptides by cleavage of isopeptide bonds. They hydrolyze bonds involving the carboxyl group of the C-terminal Gly residue of ubiquitin. The purpose of the de-ubiquitination is thought to be editing of the ubiquitin conjugates, which could rescue them from degradation, as well as recycling of the ubiquitin. The ubiquitin/proteasome system is responsible for most protein turnover in the mammalian cell, and with over 50 members, family C19 is one of the largest families of peptidases in the human genome.
Probab=100.00 E-value=7.1e-43 Score=365.11 Aligned_cols=127 Identities=20% Similarity=0.353 Sum_probs=108.9
Q ss_pred HhhCCCCCCcccCCHHHHHHHHHHHHHHHhCCC-----------CCCCCcCccceEEEEEEEe-cCCCEeeeeecCeeee
Q 003583 411 AASHPEFSSMRQQDALEFFLHFVDQVERVHSGK-----------PEVDPTKSFKFGIEERISC-PSGKVAYNRRLDYILS 478 (809)
Q Consensus 411 ~~~~~~F~~~~QQDA~EFl~~LLd~L~~~~~~~-----------~~~~i~~~F~g~l~~~i~C-~C~~vs~~~e~~~~Ls 478 (809)
++.+|+|.+++||||||||++|||.|++++... ....+.++|+|.++++++| .|++++++.+++++|+
T Consensus 22 ~~~~~~F~~~~QQDAhEFL~~LLd~l~~~~~~~~~~~~~~~~~~~~~~~~~~F~~~l~s~i~C~~C~~~s~~~e~~~~L~ 101 (245)
T cd02673 22 GKINTEFDNDDQQDAHEFLLTLLEAIDDIMQVNRTNVPPSNIEIKRLNPLEAFKYTIESSYVCIGCSFEENVSDVGNFLD 101 (245)
T ss_pred hhhhhhcCCCchhhHHHHHHHHHHHHHHHHHhhcccCCCCcccccccCHhHheeeEEEeEEEecCCCCeeeeccccceec
Confidence 466788999999999999999999999865321 1124567899999999999 9999999999999999
Q ss_pred eccCCccccchHHHHHHHHHHHhhhccCCCCCcccccCCCccHHHHHhhhcCCcccCcccCCCCCCccceeEEeeccccC
Q 003583 479 LGIPLDEATNKEELAAFQKLKMERISEGKDVTNEEIVRPRVPLEACLSTFSAPEELPDFYSTALKAKTTATKSAGLTSFP 558 (809)
Q Consensus 479 L~ip~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~sL~~cL~~f~~~E~le~~~C~~C~~~~~a~k~~~i~~lP 558 (809)
|+||... ..+|++|++.|+..+.++ ++|++|+.+ .+.|+.+|.+||
T Consensus 102 L~i~~~~--------------------------------~~~le~l~~~~~~~~~~e-~~C~~C~~~-~a~k~~~i~~~P 147 (245)
T cd02673 102 VSMIDNK--------------------------------LDIDELLISNFKTWSPIE-KDCSSCKCE-SAISSERIMTFP 147 (245)
T ss_pred cccccCC--------------------------------cchHHHHHHHhhcccccC-ccCCCCCCc-cceeechhhhCC
Confidence 9997531 136899999999888887 999999986 788999999999
Q ss_pred ceeEEEEeeEEEc
Q 003583 559 DYLVLHMRKFVME 571 (809)
Q Consensus 559 ~vLiI~LkRF~~~ 571 (809)
+||+||||||.+.
T Consensus 148 ~vL~i~lkRf~~~ 160 (245)
T cd02673 148 ECLSINLKRYKLR 160 (245)
T ss_pred hhhEEeeEeeeec
Confidence 9999999999764
No 23
>cd02666 Peptidase_C19J A subfamily of Peptidase C19. Peptidase C19 contains ubiquitinyl hydrolases. They are intracellular peptidases that remove ubiquitin molecules from polyubiquinated peptides by cleavage of isopeptide bonds. They hydrolyze bonds involving the carboxyl group of the C-terminal Gly residue of ubiquitin. The purpose of the de-ubiquitination is thought to be editing of the ubiquitin conjugates, which could rescue them from degradation, as well as recycling of the ubiquitin. The ubiquitin/proteasome system is responsible for most protein turnover in the mammalian cell, and with over 50 members, family C19 is one of the largest families of peptidases in the human genome.
Probab=100.00 E-value=4.4e-41 Score=366.97 Aligned_cols=198 Identities=18% Similarity=0.173 Sum_probs=155.5
Q ss_pred ccccccCCChhhHHHHHHHHhchHHHHHHHhcCCchhh-----hhc-cCCC---------CCCccHHHHHHHHHHHHhcC
Q 003583 311 YTGLVNLGNSCYLAATMQVMFSTHAFCTRYYTQEPLKA-----AFE-AAPA---------DPTVDLNMQLTKLAHGLLSG 375 (809)
Q Consensus 311 ~~GL~NLGNTCYmNSVLQ~L~~ip~f~~~~l~~~~~~~-----~~~-~~~~---------~p~~~l~~ql~kL~~~l~sg 375 (809)
++||.|+||||||||+||+|+++|+||++++....... ... .... ....+|..+|++||..|+.+
T Consensus 1 PvGL~NlGNTCYmNSlLQ~L~~i~~lR~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~LF~~l~~s 80 (343)
T cd02666 1 PAGLDNIGNTCYLNSLLQYFFTIKPLRDLVLNFDESKAELASDYPTERRIGGREVSRSELQRSNQFVYELRSLFNDLIHS 80 (343)
T ss_pred CCCcccCCceeHHHHHHHHHHccHHHHHHHHcCCccccccccccccccccCccccchhhhhhHHHHHHHHHHHHHHHHhC
Confidence 58999999999999999999999999999986431100 000 0000 01236999999999999864
Q ss_pred CCCCChhhhhhhhhccccCCCCCCCCChHHHHHHHHhhCCCCCCcccCCHHHHHHHHHHHHHHHhCCCC-----------
Q 003583 376 KYSVPAQEKDAAANAATTTDTKQEGIPPRMFKAVIAASHPEFSSMRQQDALEFFLHFVDQVERVHSGKP----------- 444 (809)
Q Consensus 376 ~ys~~~~~~~~~~~~~~~~~~~~~~I~P~~f~~~i~~~~~~F~~~~QQDA~EFl~~LLd~L~~~~~~~~----------- 444 (809)
....|.|..|+..+.. .||||+||+..||+.|+++++...
T Consensus 81 ---------------------~~~~v~P~~~l~~l~~--------~QQDa~Ef~~~lld~Le~~lk~~~~~~~~~~~~~~ 131 (343)
T cd02666 81 ---------------------NTRSVTPSKELAYLAL--------RQQDVTECIDNVLFQLEVALEPISNAFAGPDTEDD 131 (343)
T ss_pred ---------------------CCCccCcHHHHHhccc--------cccchHHHHHHHHHHHHHHhcCccccccCcccccc
Confidence 4578999998875532 899999999999999999986543
Q ss_pred ---CCCCcCccceEEEEEEEe-cCC---CEeeeeecCeeeeeccCCccccchHHHHHHHHHHHhhhccCCCCCcccccCC
Q 003583 445 ---EVDPTKSFKFGIEERISC-PSG---KVAYNRRLDYILSLGIPLDEATNKEELAAFQKLKMERISEGKDVTNEEIVRP 517 (809)
Q Consensus 445 ---~~~i~~~F~g~l~~~i~C-~C~---~vs~~~e~~~~LsL~ip~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~ 517 (809)
...+.++|.|++.+.++| .|+ ..+.+.++|++|+|+|+...... + ....
T Consensus 132 ~~~~~~I~~lF~G~~~~~i~c~~~~~~~~~s~~~E~F~~L~l~I~~~~~~~-----------------~-------~~~~ 187 (343)
T cd02666 132 KEQSDLIKRLFSGKTKQQLVPESMGNQPSVRTKTERFLSLLVDVGKKGREI-----------------V-------VLLE 187 (343)
T ss_pred cchhhhhhHhceeeEEEEEEecccCCCCCCccccceeEEEEEecCcccccc-----------------c-------ccCC
Confidence 236889999999999999 886 78999999999999997522100 0 0012
Q ss_pred CccHHHHHhhhcCCcccCcccCCCCCCccceeEEeeccccCceeEEEEeeEEEccCceeeeceeeecCCCccccccc
Q 003583 518 RVPLEACLSTFSAPEELPDFYSTALKAKTTATKSAGLTSFPDYLVLHMRKFVMEAGWVPKKLDVYIDVPDIIDISHM 594 (809)
Q Consensus 518 ~~sL~~cL~~f~~~E~le~~~C~~C~~~~~a~k~~~i~~lP~vLiI~LkRF~~~~~~~~~Ki~~~V~fP~~LDL~~~ 594 (809)
..+|.+||+.|+..|. |.+||++|.|||| ..++.|++.++|++|
T Consensus 188 ~~~L~d~L~~~~~~e~--------------------~~~~P~vl~~qlq-------------~~~~~~~~~~~~dry 231 (343)
T cd02666 188 PKDLYDALDRYFDYDS--------------------LTKLPQRSQVQAQ-------------LAQPLQRELISMDRY 231 (343)
T ss_pred CCCHHHHHHHhcChhh--------------------hccCCHHHHHHHh-------------hcccccchheeeccc
Confidence 3699999999998776 8999999999998 567889999999998
No 24
>PF00443 UCH: Ubiquitin carboxyl-terminal hydrolase; InterPro: IPR001394 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Cysteine peptidases have characteristic molecular topologies, which can be seen not only in their three-dimensional structures, but commonly also in the two-dimensional structures. These are peptidases in which the nucleophile is the sulphydryl group of a cysteine residue. Cysteine proteases are divided into clans (proteins which are evolutionary related), and further sub-divided into families, on the basis of the architecture of their catalytic dyad or triad []. This group of cysteine peptidases belong to the MEROPS peptidase family C19 (ubiquitin-specific protease family, clan CA). Families within the CA clan are loosely termed papain-like as protein fold of the peptidase unit resembles that of papain, the type example for clan CA. Predicted active site residues for members of this family and family C1 occur in the same order in the sequence: N/Q, C, H. The type example is human ubiquitin-specific protease 14. Ubiquitin is highly conserved, commonly found conjugated to proteins in eukaryotic cells, where it may act as a marker for rapid degradation, or it may have a chaperone function in protein assembly []. The ubiquitin is released by cleavage from the bound protein by a protease []. A number of deubiquitinising proteases are known: all are activated by thiol compounds [, ], and inhibited by thiol-blocking agents and ubiquitin aldehyde [, ], and as such have the properties of cysteine proteases []. The deubiquitinsing proteases can be split into 2 size ranges (20-30 kDa, IPR001578 from INTERPRO, and 100-200 kDa) []: this family are the 100-200 kDa peptides which includes the Ubp1 ubiquitin peptidase from yeast. Only one conserved cysteine can be identified, along with two conserved histidines. The spacing between the cysteine and the second histidine is thought to be more representative of the cysteine/histidine spacing of a cysteine protease catalytic dyad [].; GO: 0004221 ubiquitin thiolesterase activity, 0006511 ubiquitin-dependent protein catabolic process; PDB: 2LBC_A 3MHH_A 3MHS_A 3M99_A 2Y6E_D 2VHF_A 2HD5_A 3NHE_A 2IBI_A 1NBF_B ....
Probab=100.00 E-value=2.1e-40 Score=350.84 Aligned_cols=248 Identities=27% Similarity=0.476 Sum_probs=189.0
Q ss_pred ccccccCCChhhHHHHHHHHhchHHHHHHHhcCCchhhhhccCCCCCCccHHHHHHHHHHHHhcCCCCCChhhhhhhhhc
Q 003583 311 YTGLVNLGNSCYLAATMQVMFSTHAFCTRYYTQEPLKAAFEAAPADPTVDLNMQLTKLAHGLLSGKYSVPAQEKDAAANA 390 (809)
Q Consensus 311 ~~GL~NLGNTCYmNSVLQ~L~~ip~f~~~~l~~~~~~~~~~~~~~~p~~~l~~ql~kL~~~l~sg~ys~~~~~~~~~~~~ 390 (809)
++||.|+||||||||+||+|+++|+|+++++..................++.++|.+|+..|+++.
T Consensus 1 ~~Gl~N~gntCylNs~lQ~L~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~-------------- 66 (269)
T PF00443_consen 1 PVGLQNIGNTCYLNSVLQCLFHIPPFRNYLLSYNSEKENNESNPSKKIKEFLQQLQNLFRSLWSSN-------------- 66 (269)
T ss_dssp --EESBSSSTHHHHHHHHHHHTSHHHHHHHHTTCHHHHHHCSSTTSCTCHHHHHHHHHHHHHHSSC--------------
T ss_pred CCCcEeCCCchHHhHHHHhhhhhhhhhhhhhhcccchhhccccccccccchhhhhhhhhhhhhhhc--------------
Confidence 589999999999999999999999999999864211222222333455679999999999999851
Q ss_pred cccCCCCCCCCChHHHHHHHHhhCCCCCCcccCCHHHHHHHHHHHHHHHhCCCC------------CCCCcCccceEEEE
Q 003583 391 ATTTDTKQEGIPPRMFKAVIAASHPEFSSMRQQDALEFFLHFVDQVERVHSGKP------------EVDPTKSFKFGIEE 458 (809)
Q Consensus 391 ~~~~~~~~~~I~P~~f~~~i~~~~~~F~~~~QQDA~EFl~~LLd~L~~~~~~~~------------~~~i~~~F~g~l~~ 458 (809)
.....+.|..|...++...+.|..+.||||+|||..||+.|+++..... .+.+.++|.+.+.+
T Consensus 67 -----~~~~~i~~~~~~~~l~~~~~~~~~~~qqDa~E~l~~ll~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~f~~~~~~ 141 (269)
T PF00443_consen 67 -----SSDSSISPSDFINALSSINPSFSNGEQQDAHEFLSFLLDWLDEEFNSSFKRKSWKNTNSSEDSLISDLFGGQFES 141 (269)
T ss_dssp -----SSSSEEHCHHHHHHHHHHCGGGGSSSTEEHHHHHHHHHHHHHHHHTSCSSHHHHHHHHCCEESHHHHHH-EEEEE
T ss_pred -----ccccceeeccccccccccccccccccccchhhhhcccccccchhhcccccccccccccccccccccccccccccc
Confidence 3567899999999999999999999999999999999999999876421 12234444455444
Q ss_pred EEEecCCCEeeeeecCeeeeeccCCccccchHHHHHHHHHHHhhhccCCCCCcccccCCCccHHHHHhhhcCCcccCccc
Q 003583 459 RISCPSGKVAYNRRLDYILSLGIPLDEATNKEELAAFQKLKMERISEGKDVTNEEIVRPRVPLEACLSTFSAPEELPDFY 538 (809)
Q Consensus 459 ~i~C~C~~vs~~~e~~~~LsL~ip~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~sL~~cL~~f~~~E~le~~~ 538 (809)
.+.|
T Consensus 142 ~~~c---------------------------------------------------------------------------- 145 (269)
T PF00443_consen 142 SIKC---------------------------------------------------------------------------- 145 (269)
T ss_dssp EEEE----------------------------------------------------------------------------
T ss_pred cccc----------------------------------------------------------------------------
Confidence 4444
Q ss_pred CCCCCCccceeEEeeccccCceeEEEEeeEEEccC-ceeeeceeeecCC-CccccccccCCCCCCCCCCCCCCCCCCccc
Q 003583 539 STALKAKTTATKSAGLTSFPDYLVLHMRKFVMEAG-WVPKKLDVYIDVP-DIIDISHMRSKGLQPGEELLPEGGPEDEVQ 616 (809)
Q Consensus 539 C~~C~~~~~a~k~~~i~~lP~vLiI~LkRF~~~~~-~~~~Ki~~~V~fP-~~LDL~~~~~~~~~~~e~~l~~~~~~~~~~ 616 (809)
..|+.. +.+|.++|+||+|+++||.++.. +...|+..+|.|| ++|||++++..+..++
T Consensus 146 -~~c~~~-----~~~~~~~P~~L~i~l~R~~~~~~~~~~~K~~~~v~~~~~~l~l~~~~~~~~~~~-------------- 205 (269)
T PF00443_consen 146 -SSCKNS-----QSSISSLPPILIIQLKRFEFDQETGRSKKINNPVEFPLEELDLSPYLEKNNSEC-------------- 205 (269)
T ss_dssp -TTTTCE-----EEEEEEBBSEEEEEEE-EEEESTSSEEEE--CEEB--SSEEEGGGGBSSCCCTH--------------
T ss_pred -cccccc-----ccccccccceeeeccccceeccccccccccccccccCchhhhhhhhhccccccc--------------
Confidence 444433 67888999999999999988753 6789999999999 7999998876522110
Q ss_pred CCCCCCcHHHHHHHHhcCCChHHHHHHHHHhCCccHHHHHHHhhhcCCCCCCCCCCccccccccCChhhhhhhhcCCCCH
Q 003583 617 SNKPVANKDIVSQLVSMGFNHLHCEKAAVNTSNAGVEEAMNWLLSHMDDPDIDMPLSQETQCAAIDQSKVETLLSFGFSE 696 (809)
Q Consensus 617 ~~~~~~~~~~~~ql~~mgf~~~~~~~a~~~t~n~~~e~a~~wl~~h~dd~d~~~p~~~~~~~~~~~~~~~~~l~~mgf~~ 696 (809)
T Consensus 206 -------------------------------------------------------------------------------- 205 (269)
T PF00443_consen 206 -------------------------------------------------------------------------------- 205 (269)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred HHHHHHHHHcCCChhhhccccccCCCCCCCcccccccCCCCCCCCCCCCCCCCceEEEEEEEeeeccCCCccEEEEEEee
Q 003583 697 EVARNALKASGGDIEKATDWIFNNPDASTSSDMDAATSSTAQTPADAGLPDGGGKYRLFGIVSHIGTSTQCGHYVAHILK 776 (809)
Q Consensus 697 ~~a~~aL~~~~~~~~~a~dwlfs~~dd~~~~~~~~~~~~~~~~~~~~~~~~~~~~Y~L~avI~H~G~s~~sGHYva~ikk 776 (809)
.+...|+|+|||+|.| +.++|||+||||+
T Consensus 206 --------------------------------------------------~~~~~Y~L~avi~H~G-~~~~GHY~a~v~~ 234 (269)
T PF00443_consen 206 --------------------------------------------------QSNVKYRLVAVIVHYG-SADSGHYVAYVRD 234 (269)
T ss_dssp --------------------------------------------------TSSSEEEEEEEEEEES-STTSEEEEEEEEE
T ss_pred --------------------------------------------------cccceeeehhhhcccc-ccccceEEEeecc
Confidence 0246799999999999 6999999999998
Q ss_pred CC--cEEEEeCceeecccC--CCC---CceEEEEE
Q 003583 777 DG--RWAIFNDNKVGASVD--PPK---EMGYLYFF 804 (809)
Q Consensus 777 ~~--~W~~fND~kV~~~~~--~~~---~~~Yi~~Y 804 (809)
.+ +|++|||++|+.+.. ... ..||||||
T Consensus 235 ~~~~~W~~~dD~~v~~~~~~~v~~~~~~~~yll~Y 269 (269)
T PF00443_consen 235 SDDGKWYKFDDSRVTEVSWEEVIKSSNSTAYLLFY 269 (269)
T ss_dssp TTTTEEEEEETTEEEEESHHHHCCGGSTCEEEEEE
T ss_pred ccCCeEEEeeCCceEECCHHHHhhccCCceEEEeC
Confidence 54 699999999997642 334 89999999
No 25
>cd02257 Peptidase_C19 Peptidase C19 contains ubiquitinyl hydrolases. They are intracellular peptidases that remove ubiquitin molecules from polyubiquinated peptides by cleavage of isopeptide bonds. They hydrolyse bonds involving the carboxyl group of the C-terminal Gly residue of ubiquitin The purpose of the de-ubiquitination is thought to be editing of the ubiquitin conjugates, which could rescue them from degradation, as well as recycling of the ubiquitin. The ubiquitin/proteasome system is responsible for most protein turnover in the mammalian cell, and with over 50 members, family C19 is one of the largest families of peptidases in the human genome.
Probab=100.00 E-value=3e-38 Score=329.92 Aligned_cols=214 Identities=30% Similarity=0.494 Sum_probs=182.1
Q ss_pred ccCCHHHHHHHHHHHHHHHhCC---------CCCCCCcCccceEEEEEEEe-cCCCEeeeeecCeeeeeccCCccccchH
Q 003583 421 RQQDALEFFLHFVDQVERVHSG---------KPEVDPTKSFKFGIEERISC-PSGKVAYNRRLDYILSLGIPLDEATNKE 490 (809)
Q Consensus 421 ~QQDA~EFl~~LLd~L~~~~~~---------~~~~~i~~~F~g~l~~~i~C-~C~~vs~~~e~~~~LsL~ip~~~~~~~~ 490 (809)
.||||+|||..+|+.|+.++.. .....+.++|.+.+.++++| .|+..+.....+..++|++|....
T Consensus 21 ~q~Da~E~l~~ll~~l~~~~~~~~~~~~~~~~~~~~i~~~F~~~~~~~~~c~~c~~~~~~~~~~~~l~l~~~~~~~---- 96 (255)
T cd02257 21 EQQDAHEFLLFLLDKLHEELKKSSKRTSDSSSLKSLIHDLFGGKLESTIVCLECGHESVSTEPELFLSLPLPVKGL---- 96 (255)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhhcccccccccCCchhhhhcccEEeeEEECCCCCCCccCcccceeEEeeccCCCC----
Confidence 6999999999999999998764 22367899999999999999 999988888899999999986431
Q ss_pred HHHHHHHHHHhhhccCCCCCcccccCCCccHHHHHhhhcCCcccCcccCCCCC--CccceeEEeeccccCceeEEEEeeE
Q 003583 491 ELAAFQKLKMERISEGKDVTNEEIVRPRVPLEACLSTFSAPEELPDFYSTALK--AKTTATKSAGLTSFPDYLVLHMRKF 568 (809)
Q Consensus 491 ~~~~~~~~~~~~~~~g~~~~~~~~~~~~~sL~~cL~~f~~~E~le~~~C~~C~--~~~~a~k~~~i~~lP~vLiI~LkRF 568 (809)
+..+|+++|+.++..+.++++.|..|+ +.+.+.++..|.++|+||+|+++||
T Consensus 97 --------------------------~~~~l~~~l~~~~~~e~~~~~~~~~c~~~~~~~~~~~~~i~~lP~~L~i~l~R~ 150 (255)
T cd02257 97 --------------------------PQVSLEDCLEKFFKEEILEGDNCYKCEKKKKQEATKRLKIKKLPPVLIIHLKRF 150 (255)
T ss_pred --------------------------CCCcHHHHHHHhhhhhccCCCCcccCCCCcccceeEEEecccCCceeEEEeece
Confidence 126999999999999999999999998 6889999999999999999999999
Q ss_pred EEccCceeeeceeeecCCCccccccccCCCCCCCCCCCCCCCCCCcccCCCCCCcHHHHHHHHhcCCChHHHHHHHHHhC
Q 003583 569 VMEAGWVPKKLDVYIDVPDIIDISHMRSKGLQPGEELLPEGGPEDEVQSNKPVANKDIVSQLVSMGFNHLHCEKAAVNTS 648 (809)
Q Consensus 569 ~~~~~~~~~Ki~~~V~fP~~LDL~~~~~~~~~~~e~~l~~~~~~~~~~~~~~~~~~~~~~ql~~mgf~~~~~~~a~~~t~ 648 (809)
..+..|...|++.+|.||++|++.+++......
T Consensus 151 ~~~~~~~~~k~~~~v~~~~~l~~~~~~~~~~~~----------------------------------------------- 183 (255)
T cd02257 151 SFNEDGTKEKLNTKVSFPLELDLSPYLSEGEKD----------------------------------------------- 183 (255)
T ss_pred eeccccccccCCCeEeCCCcccCcccccccccc-----------------------------------------------
Confidence 998548889999999999999999775431000
Q ss_pred CccHHHHHHHhhhcCCCCCCCCCCccccccccCChhhhhhhhcCCCCHHHHHHHHHHcCCChhhhccccccCCCCCCCcc
Q 003583 649 NAGVEEAMNWLLSHMDDPDIDMPLSQETQCAAIDQSKVETLLSFGFSEEVARNALKASGGDIEKATDWIFNNPDASTSSD 728 (809)
Q Consensus 649 n~~~e~a~~wl~~h~dd~d~~~p~~~~~~~~~~~~~~~~~l~~mgf~~~~a~~aL~~~~~~~~~a~dwlfs~~dd~~~~~ 728 (809)
.
T Consensus 184 --------------------------------------------------------------------------~----- 184 (255)
T cd02257 184 --------------------------------------------------------------------------S----- 184 (255)
T ss_pred --------------------------------------------------------------------------c-----
Confidence 0
Q ss_pred cccccCCCCCCCCCCCCCCCCceEEEEEEEeeeccCCCccEEEEEEeeC--CcEEEEeCceeecccC--C-----CCCce
Q 003583 729 MDAATSSTAQTPADAGLPDGGGKYRLFGIVSHIGTSTQCGHYVAHILKD--GRWAIFNDNKVGASVD--P-----PKEMG 799 (809)
Q Consensus 729 ~~~~~~~~~~~~~~~~~~~~~~~Y~L~avI~H~G~s~~sGHYva~ikk~--~~W~~fND~kV~~~~~--~-----~~~~~ 799 (809)
.......+|+|+|||+|.|.++.+|||+||+|.. ++|++|||.+|+.+.. . ....+
T Consensus 185 ---------------~~~~~~~~Y~L~~vi~h~G~~~~~GHY~~~~~~~~~~~W~~~nD~~V~~v~~~~~~~~~~~~~~~ 249 (255)
T cd02257 185 ---------------DSDNGSYKYELVAVVVHSGTSADSGHYVAYVKDPSDGKWYKFNDDKVTEVSEEEVLEFGSLSSSA 249 (255)
T ss_pred ---------------cccCCCccEEEEEEEEEecCCCCCcCeEEEEeCCCCCceEEEeccccEEcCHHHhhhccCCCCce
Confidence 0012246799999999999988999999999985 8999999999997742 2 58889
Q ss_pred EEEEEE
Q 003583 800 YLYFFE 805 (809)
Q Consensus 800 Yi~~Y~ 805 (809)
|||||+
T Consensus 250 yll~Y~ 255 (255)
T cd02257 250 YILFYE 255 (255)
T ss_pred EEEEEC
Confidence 999996
No 26
>cd02665 Peptidase_C19I A subfamily of Peptidase C19. Peptidase C19 contains ubiquitinyl hydrolases. They are intracellular peptidases that remove ubiquitin molecules from polyubiquinated peptides by cleavage of isopeptide bonds. They hydrolyze bonds involving the carboxyl group of the C-terminal Gly residue of ubiquitin. The purpose of the de-ubiquitination is thought to be editing of the ubiquitin conjugates, which could rescue them from degradation, as well as recycling of the ubiquitin. The ubiquitin/proteasome system is responsible for most protein turnover in the mammalian cell, and with over 50 members, family C19 is one of the largest families of peptidases in the human genome.
Probab=100.00 E-value=1.7e-38 Score=325.89 Aligned_cols=129 Identities=20% Similarity=0.181 Sum_probs=107.7
Q ss_pred cCCHHHHHHHHHHHHHHHhCCC---------CCCCCcCccceEEEEEEEecCCCEeeeeecCeeeeeccCCccccchHHH
Q 003583 422 QQDALEFFLHFVDQVERVHSGK---------PEVDPTKSFKFGIEERISCPSGKVAYNRRLDYILSLGIPLDEATNKEEL 492 (809)
Q Consensus 422 QQDA~EFl~~LLd~L~~~~~~~---------~~~~i~~~F~g~l~~~i~C~C~~vs~~~e~~~~LsL~ip~~~~~~~~~~ 492 (809)
||||+||++.||+.|++.++.. ..+.+.++|.|++.+++.| |+..+.+.++|++|+|+|...
T Consensus 22 QQDa~Ef~~~Lld~Le~~l~~~~~~~~~~~~~~~~i~~lF~G~~~~~~~~-~~~~s~~~E~F~~L~l~i~~~-------- 92 (228)
T cd02665 22 QQDVSEFTHLLLDWLEDAFQAAAEAISPGEKSKNPMVQLFYGTFLTEGVL-EGKPFCNCETFGQYPLQVNGY-------- 92 (228)
T ss_pred HHHHHHHHHHHHHHHHHHhccccccccccccccchHhhceEEEEEEEEEE-CCCcccccCccEEEEEEECCC--------
Confidence 8999999999999999998633 2346889999999976666 666788999999999998431
Q ss_pred HHHHHHHHhhhccCCCCCcccccCCCccHHHHHhhhcCCcccCcccCCCCCCccceeEEeeccccCceeEEEEeeEEEcc
Q 003583 493 AAFQKLKMERISEGKDVTNEEIVRPRVPLEACLSTFSAPEELPDFYSTALKAKTTATKSAGLTSFPDYLVLHMRKFVMEA 572 (809)
Q Consensus 493 ~~~~~~~~~~~~~g~~~~~~~~~~~~~sL~~cL~~f~~~E~le~~~C~~C~~~~~a~k~~~i~~lP~vLiI~LkRF~~~~ 572 (809)
.+|++||+.|+.++.+++..|. ....+.++.+|.+||+||+||||||.++.
T Consensus 93 --------------------------~~L~e~L~~~~~ee~l~~~~~~---~~~~~~~~~~i~~lP~vL~i~LkRF~~~~ 143 (228)
T cd02665 93 --------------------------GNLHECLEAAMFEGEVELLPSD---HSVKSGQERWFTELPPVLTFELSRFEFNQ 143 (228)
T ss_pred --------------------------CCHHHHHHHhhhhccccccccc---chhhhhhhhhhhhCChhhEEEeEeeEEcC
Confidence 4899999999999999864443 34456778899999999999999999984
Q ss_pred CceeeeceeeecCCCcc
Q 003583 573 GWVPKKLDVYIDVPDII 589 (809)
Q Consensus 573 ~~~~~Ki~~~V~fP~~L 589 (809)
....|+++.|.||.+|
T Consensus 144 -~~~~Ki~~~v~FP~~l 159 (228)
T cd02665 144 -GRPEKIHDKLEFPQII 159 (228)
T ss_pred -CccEECCEEEEeeCcc
Confidence 5678999999999765
No 27
>KOG1866 consensus Ubiquitin carboxyl-terminal hydrolase [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=2.3e-40 Score=365.76 Aligned_cols=230 Identities=19% Similarity=0.252 Sum_probs=193.9
Q ss_pred CcccccccCCChhhHHHHHHHHhchHHHHHHHhcCCchhhhhccCCCCCC----ccHHHHHHHHHHHHhcCCCCCChhhh
Q 003583 309 PGYTGLVNLGNSCYLAATMQVMFSTHAFCTRYYTQEPLKAAFEAAPADPT----VDLNMQLTKLAHGLLSGKYSVPAQEK 384 (809)
Q Consensus 309 ~g~~GL~NLGNTCYmNSVLQ~L~~ip~f~~~~l~~~~~~~~~~~~~~~p~----~~l~~ql~kL~~~l~sg~ys~~~~~~ 384 (809)
.+++||+|-|+|||||+++|=|.++|.+++..+...+ . ...|. ..+.++++.+|..|...
T Consensus 93 ~gfVGLKNagatcyMNav~QQlymIP~Lrh~ll~~~~---~----td~pd~s~~e~vl~~lQ~iF~hL~~s--------- 156 (944)
T KOG1866|consen 93 EGFVGLKNAGATCYMNAVIQQLYMIPGLRHLLLAFVG---T----TDLPDMSGDEKVLRHLQVIFGHLAAS--------- 156 (944)
T ss_pred cceeeecCCCchHHHhhhhhhhhhcccccchhhhhcc---c----ccchhhcchHHHHHHHHHHHHHHHHH---------
Confidence 4789999999999999999999999999987653221 1 11122 23899999999888553
Q ss_pred hhhhhccccCCCCCCCCChHHHHHHHHhhCCCCCCcccCCHHHHHHHHHHHHHHHhCCCCC-CCCcCccceEEEEEEEe-
Q 003583 385 DAAANAATTTDTKQEGIPPRMFKAVIAASHPEFSSMRQQDALEFFLHFVDQVERVHSGKPE-VDPTKSFKFGIEERISC- 462 (809)
Q Consensus 385 ~~~~~~~~~~~~~~~~I~P~~f~~~i~~~~~~F~~~~QQDA~EFl~~LLd~L~~~~~~~~~-~~i~~~F~g~l~~~i~C- 462 (809)
.-+++-|..|-..+.--.......+||||-|||..|||.+++.+++-+. ....+.|+|.....-.|
T Consensus 157 ------------~lQyyVPeg~Wk~Fr~~~~pln~reqhDA~eFf~sLld~~De~LKklg~p~lf~n~f~G~ysdqKIC~ 224 (944)
T KOG1866|consen 157 ------------QLQYYVPEGFWKQFRLWGEPLNLREQHDALEFFNSLLDSLDEALKKLGHPQLFSNTFGGSYSDQKICQ 224 (944)
T ss_pred ------------hhhhhcchhHHHHhhccCCccchHhhhhHHHHHHHHHHHHHHHHHHhCCcHHHHHHhcCccchhhhhc
Confidence 4578889988877765556678889999999999999999999876543 35678899999999999
Q ss_pred cCCCEeeeeecCeeeeeccCCccccchHHHHHHHHHHHhhhccCCCCCcccccCCCccHHHHHhhhcCCcccCc---ccC
Q 003583 463 PSGKVAYNRRLDYILSLGIPLDEATNKEELAAFQKLKMERISEGKDVTNEEIVRPRVPLEACLSTFSAPEELPD---FYS 539 (809)
Q Consensus 463 ~C~~vs~~~e~~~~LsL~ip~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~sL~~cL~~f~~~E~le~---~~C 539 (809)
.|.+.-...++|..|+|.|.- -+|+++|+.|.+.|.++| |+|
T Consensus 225 ~CpHRY~~eE~F~~l~l~i~~-----------------------------------~nLeesLeqfv~gevlEG~nAYhC 269 (944)
T KOG1866|consen 225 GCPHRYECEESFTTLNLDIRH-----------------------------------QNLEESLEQFVKGEVLEGANAYHC 269 (944)
T ss_pred cCCcccCccccceeeeeeccc-----------------------------------chHHHHHHHHHHHHHhcCcchhhh
Confidence 999977778899999999851 389999999999999998 999
Q ss_pred CCCCCccceeEEeeccccCceeEEEEeeEEEcc-CceeeeceeeecCCCccccccccCCCCCC
Q 003583 540 TALKAKTTATKSAGLTSFPDYLVLHMRKFVMEA-GWVPKKLDVYIDVPDIIDISHMRSKGLQP 601 (809)
Q Consensus 540 ~~C~~~~~a~k~~~i~~lP~vLiI~LkRF~~~~-~~~~~Ki~~~V~fP~~LDL~~~~~~~~~~ 601 (809)
++|+++....|++.|++||.||.||||||.++- +...+|-+..+.||.+|||+||...|...
T Consensus 270 eKCdeK~~TvkRt~ik~LPsvl~IqLkRF~yD~e~~~~iK~n~~frFP~~ldMePYtvsg~a~ 332 (944)
T KOG1866|consen 270 EKCDEKVDTVKRTCIKKLPSVLAIQLKRFDYDWERECAIKFNDYFRFPRELDMEPYTVSGVAK 332 (944)
T ss_pred hhhhhhhHhHHHHHHhhCChhheehhhhccchhhhccccccchhcccchhhcCCceeehhhhh
Confidence 999999999999999999999999999999972 23467999999999999999999887643
No 28
>COG5077 Ubiquitin carboxyl-terminal hydrolase [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=3.3e-39 Score=356.58 Aligned_cols=223 Identities=20% Similarity=0.256 Sum_probs=190.7
Q ss_pred CcccccccCCChhhHHHHHHHHhchHHHHHHHhcCCchhhhhccCCCCCCccHHHHHHHHHHHHhcCCCCCChhhhhhhh
Q 003583 309 PGYTGLVNLGNSCYLAATMQVMFSTHAFCTRYYTQEPLKAAFEAAPADPTVDLNMQLTKLAHGLLSGKYSVPAQEKDAAA 388 (809)
Q Consensus 309 ~g~~GL~NLGNTCYmNSVLQ~L~~ip~f~~~~l~~~~~~~~~~~~~~~p~~~l~~ql~kL~~~l~sg~ys~~~~~~~~~~ 388 (809)
.|++||+|.|.||||||+||+||.+..||+..+... +....+.+....+|+++|..|..+
T Consensus 191 TGYVGlrNqGATCYmNSLlQslffi~~FRk~Vy~ip-------Td~p~grdSValaLQr~Fynlq~~------------- 250 (1089)
T COG5077 191 TGYVGLRNQGATCYMNSLLQSLFFIAKFRKDVYGIP-------TDHPRGRDSVALALQRLFYNLQTG------------- 250 (1089)
T ss_pred eeeeeeccCCceeeHHHHHHHHHHHHHHHHHhhcCC-------CCCCCccchHHHHHHHHHHHHhcc-------------
Confidence 699999999999999999999999999999987532 122345667889999999999765
Q ss_pred hccccCCCCCCCCChHHHHHHHHhhCCCCCCcccCCHHHHHHHHHHHHHHHhCCCC-CCCCcCccceEEEEEEEe-cCCC
Q 003583 389 NAATTTDTKQEGIPPRMFKAVIAASHPEFSSMRQQDALEFFLHFVDQVERVHSGKP-EVDPTKSFKFGIEERISC-PSGK 466 (809)
Q Consensus 389 ~~~~~~~~~~~~I~P~~f~~~i~~~~~~F~~~~QQDA~EFl~~LLd~L~~~~~~~~-~~~i~~~F~g~l~~~i~C-~C~~ 466 (809)
..+++...|...++.. .+....|+|.|||-+-|.|.|++..+.+. +.-++.+|-|++.+.+.| .-..
T Consensus 251 ---------~~PvdTteltrsfgWd--s~dsf~QHDiqEfnrVl~DnLEksmrgt~VEnaln~ifVgkmksyikCvnvny 319 (1089)
T COG5077 251 ---------EEPVDTTELTRSFGWD--SDDSFMQHDIQEFNRVLQDNLEKSMRGTVVENALNGIFVGKMKSYIKCVNVNY 319 (1089)
T ss_pred ---------CCCcchHHhhhhcCcc--cchHHHHHhHHHHHHHHHHHHHHhhcCChhhhHHhHHHHHHhhceeeEEEech
Confidence 5688888888776554 46677899999999999999999876553 346789999999999999 9999
Q ss_pred EeeeeecCeeeeeccCCccccchHHHHHHHHHHHhhhccCCCCCcccccCCCccHHHHHhhhcCCcccCc---ccCCCCC
Q 003583 467 VAYNRRLDYILSLGIPLDEATNKEELAAFQKLKMERISEGKDVTNEEIVRPRVPLEACLSTFSAPEELPD---FYSTALK 543 (809)
Q Consensus 467 vs~~~e~~~~LsL~ip~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~sL~~cL~~f~~~E~le~---~~C~~C~ 543 (809)
.+.+.+.+|++.|.+-.. -+|++.+++|.+.|+++| |.|++-|
T Consensus 320 EsarvedfwdiqlNvK~~----------------------------------knLqeSfr~yIqvE~l~GdN~Y~ae~~G 365 (1089)
T COG5077 320 ESARVEDFWDIQLNVKGM----------------------------------KNLQESFRRYIQVETLDGDNRYNAEKHG 365 (1089)
T ss_pred hhhhHHHHHHHHhcccch----------------------------------hhHHHHHHHhhhheeccCCccccccccc
Confidence 999999999999988432 389999999999999998 6666554
Q ss_pred CccceeEEeeccccCceeEEEEeeEEEccC-ceeeeceeeecCCCccccccccCC
Q 003583 544 AKTTATKSAGLTSFPDYLVLHMRKFVMEAG-WVPKKLDVYIDVPDIIDISHMRSK 597 (809)
Q Consensus 544 ~~~~a~k~~~i~~lP~vLiI~LkRF~~~~~-~~~~Ki~~~V~fP~~LDL~~~~~~ 597 (809)
.+.|.|-.-|.+||+||.||||||.++.. ....||+...+||+++||.||+++
T Consensus 366 -lqdAkKGViFeSlPpVlhlqLKRFeyDfe~d~mvKINDryEFP~eiDl~pfld~ 419 (1089)
T COG5077 366 -LQDAKKGVIFESLPPVLHLQLKRFEYDFERDMMVKINDRYEFPLEIDLLPFLDR 419 (1089)
T ss_pred -chhhccceeeccCchHHHHHHHHhccccccCceeeecccccCcchhccccccCc
Confidence 56899999999999999999999999864 567899999999999999999865
No 29
>cd02672 Peptidase_C19P A subfamily of Peptidase C19. Peptidase C19 contains ubiquitinyl hydrolases. They are intracellular peptidases that remove ubiquitin molecules from polyubiquinated peptides by cleavage of isopeptide bonds. They hydrolyze bonds involving the carboxyl group of the C-terminal Gly residue of ubiquitin. The purpose of the de-ubiquitination is thought to be editing of the ubiquitin conjugates, which could rescue them from degradation, as well as recycling of the ubiquitin. The ubiquitin/proteasome system is responsible for most protein turnover in the mammalian cell, and with over 50 members, family C19 is one of the largest families of peptidases in the human genome.
Probab=100.00 E-value=1.9e-35 Score=313.18 Aligned_cols=240 Identities=20% Similarity=0.293 Sum_probs=189.5
Q ss_pred CcccccccCCChhhHHHHHHHHhchHHHHHHHhcCCchhhhhccCCCCCCccHHHHHHHHHHHHhcCCCCCChhhhhhhh
Q 003583 309 PGYTGLVNLGNSCYLAATMQVMFSTHAFCTRYYTQEPLKAAFEAAPADPTVDLNMQLTKLAHGLLSGKYSVPAQEKDAAA 388 (809)
Q Consensus 309 ~g~~GL~NLGNTCYmNSVLQ~L~~ip~f~~~~l~~~~~~~~~~~~~~~p~~~l~~ql~kL~~~l~sg~ys~~~~~~~~~~ 388 (809)
.+++||.|+|.|||+||+||+|+++|+||+... +.. .......|+.|+|..||..+.
T Consensus 13 t~~~gl~~~~~~~y~n~~lq~~~~~~~~~~~~~------~~~--~~~~~~~~l~~el~~lfs~~i--------------- 69 (268)
T cd02672 13 TNYAGLENHITNSYCNSLLQLLYFIPPFRNFTA------IIL--VACPKESCLLCELGYLFSTLI--------------- 69 (268)
T ss_pred ccccccccCCccchHHHHHHHHHhcHHHHHHHH------hhc--ccCCcCccHHHHHHHHHHHHH---------------
Confidence 468999999999999999999999999999722 111 112356799999999982221
Q ss_pred hccccCCCCCCCCChHHHHHHHHhhCCCCCCcccCCHHHHHHHHHHHHHHHhCCCCCCCCcCccceEEEEEEEecCCCEe
Q 003583 389 NAATTTDTKQEGIPPRMFKAVIAASHPEFSSMRQQDALEFFLHFVDQVERVHSGKPEVDPTKSFKFGIEERISCPSGKVA 468 (809)
Q Consensus 389 ~~~~~~~~~~~~I~P~~f~~~i~~~~~~F~~~~QQDA~EFl~~LLd~L~~~~~~~~~~~i~~~F~g~l~~~i~C~C~~vs 468 (809)
+-|-.+|++.+..+..... ..|++++
T Consensus 70 -------------------------------------q~F~~fll~~i~~~~~~~~-----------------~~C~~~s 95 (268)
T cd02672 70 -------------------------------------QNFTRFLLETISQDQLGTP-----------------FSCGTSR 95 (268)
T ss_pred -------------------------------------HHHHHHHHHHHHHHhcccC-----------------CCCCcee
Confidence 3477789999887654211 2689999
Q ss_pred eeeecCeeeeeccCCccccchHHHHHHHHHHHhhhccCCCCCcccccCCCccHHHHHhhhcCCcccCcccCCCCCCccce
Q 003583 469 YNRRLDYILSLGIPLDEATNKEELAAFQKLKMERISEGKDVTNEEIVRPRVPLEACLSTFSAPEELPDFYSTALKAKTTA 548 (809)
Q Consensus 469 ~~~e~~~~LsL~ip~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~sL~~cL~~f~~~E~le~~~C~~C~~~~~a 548 (809)
++.+++++|+||+|.... .+.++|.+||+.|+..|.+.+++|++|++++.+
T Consensus 96 ~~~~~~~~LsLpip~~~~-----------------------------~~~~sl~~cL~~~~~~E~~~~~~C~~C~~~~~a 146 (268)
T cd02672 96 NSVSLLYTLSLPLGSTKT-----------------------------SKESTFLQLLKRSLDLEKVTKAWCDTCCKYQPL 146 (268)
T ss_pred eccccceeeeeecCcccc-----------------------------ccCCCHHHHHHHHhhhhhcccccccccCccccc
Confidence 999999999999986320 123799999999999999878999999999999
Q ss_pred eEEeeccccCc----eeEEEEeeEEEccC--c----eeeeceeeecCCCccccccccCCCCCCCCCCCCCCCCCCcccCC
Q 003583 549 TKSAGLTSFPD----YLVLHMRKFVMEAG--W----VPKKLDVYIDVPDIIDISHMRSKGLQPGEELLPEGGPEDEVQSN 618 (809)
Q Consensus 549 ~k~~~i~~lP~----vLiI~LkRF~~~~~--~----~~~Ki~~~V~fP~~LDL~~~~~~~~~~~e~~l~~~~~~~~~~~~ 618 (809)
.|+.+|.+||+ ||+||+|||..... | ...|++..|.||+.+++..+...+
T Consensus 147 ~k~~~i~~lP~~L~~VL~i~lkrf~~~~~~~~~~~~~~~~~~~~v~f~~~~~~~~~~~~~-------------------- 206 (268)
T cd02672 147 EQTTSIRHLPDILLLVLVINLSVTNGEFDDINVVLPSGKVMQNKVSPKAIDHDKLVKNRG-------------------- 206 (268)
T ss_pred EEEEEeecCCCcccceEEEEEeccChhhcccCcceeEEEecCCeecccccccchhhhccC--------------------
Confidence 99999999999 99999999986521 1 134666777777665554221000
Q ss_pred CCCCcHHHHHHHHhcCCChHHHHHHHHHhCCccHHHHHHHhhhcCCCCCCCCCCccccccccCChhhhhhhhcCCCCHHH
Q 003583 619 KPVANKDIVSQLVSMGFNHLHCEKAAVNTSNAGVEEAMNWLLSHMDDPDIDMPLSQETQCAAIDQSKVETLLSFGFSEEV 698 (809)
Q Consensus 619 ~~~~~~~~~~ql~~mgf~~~~~~~a~~~t~n~~~e~a~~wl~~h~dd~d~~~p~~~~~~~~~~~~~~~~~l~~mgf~~~~ 698 (809)
T Consensus 207 -------------------------------------------------------------------------------- 206 (268)
T cd02672 207 -------------------------------------------------------------------------------- 206 (268)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred HHHHHHHcCCChhhhccccccCCCCCCCcccccccCCCCCCCCCCCCCCCCceEEEEEEEeeeccCCCccEEEEEEee--
Q 003583 699 ARNALKASGGDIEKATDWIFNNPDASTSSDMDAATSSTAQTPADAGLPDGGGKYRLFGIVSHIGTSTQCGHYVAHILK-- 776 (809)
Q Consensus 699 a~~aL~~~~~~~~~a~dwlfs~~dd~~~~~~~~~~~~~~~~~~~~~~~~~~~~Y~L~avI~H~G~s~~sGHYva~ikk-- 776 (809)
..+...|+|+|||+|+|.+..+||||||||.
T Consensus 207 -----------------------------------------------~~~~~~Y~L~gvV~hig~~~~~GHyva~vk~~~ 239 (268)
T cd02672 207 -----------------------------------------------QESIYKYELVGYVCEINDSSRGQHNVVFVIKVN 239 (268)
T ss_pred -----------------------------------------------CCCCceEEEEEEEEEecCCCCCCcEEEEEEccC
Confidence 0124679999999999987799999999997
Q ss_pred ----CCcEEEEeCceeecccCCCCCceEEEEEE
Q 003583 777 ----DGRWAIFNDNKVGASVDPPKEMGYLYFFE 805 (809)
Q Consensus 777 ----~~~W~~fND~kV~~~~~~~~~~~Yi~~Y~ 805 (809)
.++||+|||..|+.+.+ .||||||+
T Consensus 240 ~~~~~~~WylFND~~V~~vs~----~aYiLfY~ 268 (268)
T cd02672 240 EESTHGRWYLFNDFLVTPVSE----LAYILLYQ 268 (268)
T ss_pred CCCCCCcEEEecCeEEEEcCc----hheeeecC
Confidence 57999999999998876 99999995
No 30
>KOG4598 consensus Putative ubiquitin-specific protease [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=4.9e-37 Score=335.40 Aligned_cols=212 Identities=21% Similarity=0.322 Sum_probs=172.9
Q ss_pred cCCcccccccCCChhhHHHHHHHHhchHHHHHHHhcCCchhhhhccCCCCCCccHHHHHHHHHHHHhcCCCCCChhhhhh
Q 003583 307 FGPGYTGLVNLGNSCYLAATMQVMFSTHAFCTRYYTQEPLKAAFEAAPADPTVDLNMQLTKLAHGLLSGKYSVPAQEKDA 386 (809)
Q Consensus 307 ~~~g~~GL~NLGNTCYmNSVLQ~L~~ip~f~~~~l~~~~~~~~~~~~~~~p~~~l~~ql~kL~~~l~sg~ys~~~~~~~~ 386 (809)
.+.|++||.|...|||+|+.+|+|+-.|.|++.++...
T Consensus 83 ~~~~yvglvnqa~~~~l~~~~~a~~~~~~~~~~~yts~------------------------------------------ 120 (1203)
T KOG4598|consen 83 NGHRYVGLVNQASNDLLFEQSCAISLHDSGISKCYTSE------------------------------------------ 120 (1203)
T ss_pred CCcceEeehhhHHHHHHHHHhhhhccChhhhhhhhCCC------------------------------------------
Confidence 45789999999999999999999999999999876321
Q ss_pred hhhccccCCCCCCCCChHHHHHHHHhhCCCCCCcccCCHHHHHHHHHHHHHHHhCCCC-CCCCcCccceEEEEEEEe-cC
Q 003583 387 AANAATTTDTKQEGIPPRMFKAVIAASHPEFSSMRQQDALEFFLHFVDQVERVHSGKP-EVDPTKSFKFGIEERISC-PS 464 (809)
Q Consensus 387 ~~~~~~~~~~~~~~I~P~~f~~~i~~~~~~F~~~~QQDA~EFl~~LLd~L~~~~~~~~-~~~i~~~F~g~l~~~i~C-~C 464 (809)
...+-...+-..+|.... ..++|+|.+|+-+.++|.|+...+.+. ...|.++++|+++.-+.| +|
T Consensus 121 -----------~~~~et~dlt~sfgw~s~--ea~~qhdiqelcr~mfdalehk~k~t~~~~li~~ly~g~m~d~v~cl~c 187 (1203)
T KOG4598|consen 121 -----------NDSLETKDLTQSFGWTSN--EAYDQHDVQELCRLMFDALEHKWKGTEHEKLIQDLYRGTMEDFVACLKC 187 (1203)
T ss_pred -----------cccccchhhHhhcCCCcc--hhhhhhhHHHHHHHHHHHHHhhhcCchHHHHHHHHhcchHHHHHHHHHc
Confidence 111222223333333322 247899999999999999998776442 356889999999999999 99
Q ss_pred CCEeeeeecCeeeeeccCCccccchHHHHHHHHHHHhhhccCCCCCcccccCCCccHHHHHhhhcCCcccCc---ccCCC
Q 003583 465 GKVAYNRRLDYILSLGIPLDEATNKEELAAFQKLKMERISEGKDVTNEEIVRPRVPLEACLSTFSAPEELPD---FYSTA 541 (809)
Q Consensus 465 ~~vs~~~e~~~~LsL~ip~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~sL~~cL~~f~~~E~le~---~~C~~ 541 (809)
+..+.+.+.|.+|.|+|....+.. .| -+++++|.+|.+||.++| |.|++
T Consensus 188 ~~e~~~~d~fld~pl~v~pfg~~~-----ay-----------------------~sieeal~afvqpe~ldg~nqy~ce~ 239 (1203)
T KOG4598|consen 188 GRESVKTDYFLDLPLAVKPFGAIH-----AY-----------------------KSVEEALTAFVQPELLDGSNQYMCEN 239 (1203)
T ss_pred CccccccceeecccccccCCcchh-----hh-----------------------hhHHHHHHHhcChhhcCCccHHHHhh
Confidence 999999999999999886543221 11 389999999999999997 99999
Q ss_pred CCCccceeEEeeccccCceeEEEEeeEEEccC-ceeeeceeeecCCCccccccccCCCCCC
Q 003583 542 LKAKTTATKSAGLTSFPDYLVLHMRKFVMEAG-WVPKKLDVYIDVPDIIDISHMRSKGLQP 601 (809)
Q Consensus 542 C~~~~~a~k~~~i~~lP~vLiI~LkRF~~~~~-~~~~Ki~~~V~fP~~LDL~~~~~~~~~~ 601 (809)
|+++..|.|-.+|++||-+|.||||||.++-+ .-..|++..|.||+.|||..|.......
T Consensus 240 ck~k~dahkgl~~~~fpy~lt~~lkrfdfdy~tmhriklnd~~tfp~~l~ln~~in~~~~s 300 (1203)
T KOG4598|consen 240 CKSKQDAHKGLRITQFPYLLTIQLKRFDFDYNTMHRIKLNDKMTFPDVLDLNDYVNKEKRS 300 (1203)
T ss_pred hhhhhhhhcCceeeccceeeEEeeecccccchheeeeeecccccCcccccHHHhhhhccCC
Confidence 99999999999999999999999999999865 4467999999999999999998764443
No 31
>KOG1870 consensus Ubiquitin C-terminal hydrolase [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=1.6e-34 Score=347.85 Aligned_cols=158 Identities=24% Similarity=0.354 Sum_probs=137.1
Q ss_pred cCCcccccccCCChhhHHHHHHHHhchHHHHHHHhcCCchhhhhccCCCCCCccHHHHHHHHHHHHhcCCCCCChhhhhh
Q 003583 307 FGPGYTGLVNLGNSCYLAATMQVMFSTHAFCTRYYTQEPLKAAFEAAPADPTVDLNMQLTKLAHGLLSGKYSVPAQEKDA 386 (809)
Q Consensus 307 ~~~g~~GL~NLGNTCYmNSVLQ~L~~ip~f~~~~l~~~~~~~~~~~~~~~p~~~l~~ql~kL~~~l~sg~ys~~~~~~~~ 386 (809)
..+|.+||.|+||||||||.+|+|.+.+.++++|+...+...+...++......+...+..+...+|++
T Consensus 242 ~~~g~~Gl~nlGntcfmns~~q~l~~~~~l~e~f~~~~~~~ein~~n~~~~~~~~~~~~~~l~~~~~s~----------- 310 (842)
T KOG1870|consen 242 SERGETGLSNLGNTCFMNSALQCLSNTPELLEYFLSDLYDREINESNPLGSAGEVASSFADLIKQLWSG----------- 310 (842)
T ss_pred CcccccccccCCccccchhhhhhhccCcchhHHHHhHhhHhhhcccCCCcccceechhhhhHHHHhccC-----------
Confidence 357999999999999999999999999999999998765454455555566677888888999999987
Q ss_pred hhhccccCCCCCCCCChHHHHHHHHhhCCCCCCcccCCHHHHHHHHHHHHHHHhCCCC----------------------
Q 003583 387 AANAATTTDTKQEGIPPRMFKAVIAASHPEFSSMRQQDALEFFLHFVDQVERVHSGKP---------------------- 444 (809)
Q Consensus 387 ~~~~~~~~~~~~~~I~P~~f~~~i~~~~~~F~~~~QQDA~EFl~~LLd~L~~~~~~~~---------------------- 444 (809)
.+..|.|..++..++...++|.++.|||.+||+.+|+|.||+.+....
T Consensus 311 ----------~~~~v~~~~~~~~~~~~a~~~~g~~q~d~~E~lafllDglhedl~~~~~kpy~~~~d~~~rp~~~~~~~~ 380 (842)
T KOG1870|consen 311 ----------NKSAVAPTSFRTSLASFASEFSGYGQQDSQELLAFLLDGLHEDLNRVSSKPYVEGKDSDLRPDQEVAAEV 380 (842)
T ss_pred ----------CccccCchhhhhhhhhccccccCcccccchhhhhHHhhhhhHHhhccCCcCcccccccccchhhhhhHHH
Confidence 234799999999999999999999999999999999999999874321
Q ss_pred --------CCCCcCccceEEEEEEEe-cCCCEeeeeecCeeeeeccCCcc
Q 003583 445 --------EVDPTKSFKFGIEERISC-PSGKVAYNRRLDYILSLGIPLDE 485 (809)
Q Consensus 445 --------~~~i~~~F~g~l~~~i~C-~C~~vs~~~e~~~~LsL~ip~~~ 485 (809)
.+.+.++|.+.+.+.++| .|++++.++++|..|+||+|...
T Consensus 381 ~~~~~~~~~s~i~d~~~~~~~S~~~c~~C~~~svt~d~f~~Lslp~p~~~ 430 (842)
T KOG1870|consen 381 WDYHLKRNRSVIVDLFDGTYKSTLQCPTCGKVSVTFDPFGYLSLPLPGKE 430 (842)
T ss_pred HHhhhhhccceeeeeecceecccccCccCCCceEEeeccccccccCCCCc
Confidence 157899999999999999 99999999999999999999543
No 32
>KOG2026 consensus Spindle pole body protein - Sad1p [Cytoskeleton]
Probab=100.00 E-value=1e-32 Score=286.95 Aligned_cols=352 Identities=20% Similarity=0.260 Sum_probs=259.2
Q ss_pred CCCcccccccccCCCcccCCCC-ccccccCCCCCeEEecccCcccccCCcCCCCCCCchHhhHhhhcCccEEEeeCcccc
Q 003583 160 QTSAYAMNLQQIDNGVIIPPSG-WKCAKCDKRDNLWLNLTDGMILCGRRNWDGTGGNNHAVEHYKETGYPLAVKLGTITS 238 (809)
Q Consensus 160 ~~c~h~~~l~q~~~~~~~~~~~-~~C~~C~~~~~lw~CL~Cg~~~Cgr~~~~g~~gn~ha~~H~~~~~H~~~v~lgtit~ 238 (809)
+.|.++++.. +..++.+. -.|+.....-|.+.||.||...-||. ..+||..|..+.||.+++++.
T Consensus 11 ~~~~yldtv~----r~vldfd~ek~c~vslsnLnvyAclvcg~y~qgr~------~kS~A~~h~l~~ghhvf~nl~---- 76 (442)
T KOG2026|consen 11 PNYAYLETVV----RRVLDFDFEKPCSVSLSNLNVYACLVCGKYFQGRG------EKSHAYTHSLEEGHHVFLNLS---- 76 (442)
T ss_pred cchHhhhhhh----hhhccccCCCCCcccccccceeeeeeeCchhhCcC------ccccchhccccccccceeccc----
Confidence 4556655432 12334433 46888888899999999999988776 569999999999999999983
Q ss_pred CCCCcEEEeccCCCcccchhHHHHHHhhccccccccccccchhhhhhhccccccccccccCCCccccccCCcccccccCC
Q 003583 239 DLEGADVFSYPEDDSVVDPLLAQHLAFFGIDFSSLQKTEMTTAERELDQNTNFDWNRIQESGQDVEPLFGPGYTGLVNLG 318 (809)
Q Consensus 239 ~~~~~~v~cy~cd~~v~d~~l~~~L~~~gi~~~~~~kteksl~el~~~~n~~~e~~~~~e~g~~l~p~~~~g~~GL~NLG 318 (809)
+.+..|+...++.+.||.+.+..-..-... .+++ ..-..+.|.++.+... -..|.||.+||.|+-
T Consensus 77 --telkfyvlpe~~ei~d~s~~~ikhslkptf---tr~~---cp~lD~~nr~~~raLd-------~~tYLpG~VGLnNik 141 (442)
T KOG2026|consen 77 --TELKFYVLPENYEIDDPSLGDIKHSLKPTF---TKTD---CPNLDKVNRKLSRALD-------GSTYLPGFVGLNNIK 141 (442)
T ss_pred --cceeEEecchhccccCchhhhhhcccccee---ehhh---cccccccchhhhhhhc-------CCcceeeeeccchhh
Confidence 138889999999999998876542110000 0100 0000011222211111 124679999999999
Q ss_pred ChhhHHHHHHHHhchHHHHHHHhcCCchhhhhccCCCCCCccHHHHHHHHHHHHhcCCCCCChhhhhhhhhccccCCCCC
Q 003583 319 NSCYLAATMQVMFSTHAFCTRYYTQEPLKAAFEAAPADPTVDLNMQLTKLAHGLLSGKYSVPAQEKDAAANAATTTDTKQ 398 (809)
Q Consensus 319 NTCYmNSVLQ~L~~ip~f~~~~l~~~~~~~~~~~~~~~p~~~l~~ql~kL~~~l~sg~ys~~~~~~~~~~~~~~~~~~~~ 398 (809)
++-|.|++||+|.+.+++|++|+... +..+....+...|..+...||+.+ ...
T Consensus 142 ~~dy~n~vl~~ls~v~PlRnyFl~~~--------n~~d~~~~lv~rl~~l~rklw~~r-------------------~fk 194 (442)
T KOG2026|consen 142 ANDYANAVLQALSHVVPLRNYFLLEE--------NYFDNLTELVQRLGELIRKLWNPR-------------------NFK 194 (442)
T ss_pred hHHHHHHHHHHHhccchhhhhhcccc--------cccchhHHHHHHHHHHHHHhcChh-------------------hhc
Confidence 99999999999999999999998642 122344567888899999999853 577
Q ss_pred CCCChHHHHHHHHh-hCCCCCCcccCCHHHHHHHHHHHHHHHhCCCC--CCCCcCccceEEEEEEEe-c----CCCEeee
Q 003583 399 EGIPPRMFKAVIAA-SHPEFSSMRQQDALEFFLHFVDQVERVHSGKP--EVDPTKSFKFGIEERISC-P----SGKVAYN 470 (809)
Q Consensus 399 ~~I~P~~f~~~i~~-~~~~F~~~~QQDA~EFl~~LLd~L~~~~~~~~--~~~i~~~F~g~l~~~i~C-~----C~~vs~~ 470 (809)
..++|..|.+++-. .+.+|..++|-|+.|||.|||+.||..++... +++++..|+|.++..-+- . --.....
T Consensus 195 ~hvSphe~lqaV~~~s~k~f~i~~q~DpveFlswllntlhs~l~~~k~~~SIi~~~fqG~~ri~k~~~~~~~~~~~~~i~ 274 (442)
T KOG2026|consen 195 GHVSPHEFLQAVMKLSKKRFRIGQQSDPVEFLSWLLNTLHSDLRGSKKASSIIHKSFQGEVRIVKEKQGEASENENKEIS 274 (442)
T ss_pred ccCCHHHHHHHHHHHhhhheecCCCCCHHHHHHHHHHHHHHHhCCCCCchhHhhHhhcceEEeeeeccccccccccceEE
Confidence 89999999988754 45679999999999999999999999986543 479999999998876554 3 2234566
Q ss_pred eecCeeeeeccCCccccchHHHHHHHHHHHhhhccCCCCCcccccCCCccHHHHHhhhcCCcccCcccCCCCCCccceeE
Q 003583 471 RRLDYILSLGIPLDEATNKEELAAFQKLKMERISEGKDVTNEEIVRPRVPLEACLSTFSAPEELPDFYSTALKAKTTATK 550 (809)
Q Consensus 471 ~e~~~~LsL~ip~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~sL~~cL~~f~~~E~le~~~C~~C~~~~~a~k 550 (809)
..+|+.|+|++|..+... ...+....|+|.|.+.|..|.....-+ +. ....+ +
T Consensus 275 ~~~Fl~LtLDLP~~plfk--------------------D~~e~niiPQV~l~~lL~Kf~g~t~~e-~~-----~~~~~-~ 327 (442)
T KOG2026|consen 275 VMPFLYLTLDLPPPPLFK--------------------DVMEKNIIPQVALFDLLKKFDGETVTE-VV-----TPKLA-M 327 (442)
T ss_pred EEeeEEEEecCCCCCccc--------------------chhhhcccccchHHHHHHHhcCceeee-ec-----chhhh-h
Confidence 788999999999866432 112335678999999999998755544 21 12223 7
Q ss_pred EeeccccCceeEEEEeeEEEccCceeeeceeeecCC-Ccccccccc
Q 003583 551 SAGLTSFPDYLVLHMRKFVMEAGWVPKKLDVYIDVP-DIIDISHMR 595 (809)
Q Consensus 551 ~~~i~~lP~vLiI~LkRF~~~~~~~~~Ki~~~V~fP-~~LDL~~~~ 595 (809)
+.++.++|+|||+|++||.-+ +|...|+.+.|.|| ..+|+.+++
T Consensus 328 rf~l~k~P~ylifh~~rF~kN-n~f~ekNpTl~~f~~~~~~~~~~~ 372 (442)
T KOG2026|consen 328 RFRLTKLPRYLIFHMKRFKKN-NFFKEKNPTLVEFPYSEVDILHVL 372 (442)
T ss_pred heeeecCCceEEEEeeecccc-CcccccCCceeeccCCccchhhhh
Confidence 899999999999999999988 79999999999999 667776554
No 33
>KOG1863 consensus Ubiquitin carboxyl-terminal hydrolase [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=2.9e-33 Score=344.81 Aligned_cols=227 Identities=23% Similarity=0.296 Sum_probs=196.8
Q ss_pred Ccc-cccccCCChhhHHHHHHHHhchHHHHHHHhcCCchhhhhccCCCCCCccHHHHHHHHHHHHhcCCCCCChhhhhhh
Q 003583 309 PGY-TGLVNLGNSCYLAATMQVMFSTHAFCTRYYTQEPLKAAFEAAPADPTVDLNMQLTKLAHGLLSGKYSVPAQEKDAA 387 (809)
Q Consensus 309 ~g~-~GL~NLGNTCYmNSVLQ~L~~ip~f~~~~l~~~~~~~~~~~~~~~p~~~l~~ql~kL~~~l~sg~ys~~~~~~~~~ 387 (809)
.|+ +||+|+||||||||+||+||.++.||+.++.... .....+|...+..+|+.||..|..+
T Consensus 167 tg~~vGL~N~GaTCY~NsllQ~lf~~~~FR~~Vy~~~~-----~~~~~~~~~~v~~~lq~lF~~LQ~s------------ 229 (1093)
T KOG1863|consen 167 TGFPVGLKNLGATCYVNSLLQVLFLIPEFRRAVYSIPP-----FTGHEDPRRSIPLALQRLFYELQMS------------ 229 (1093)
T ss_pred CCCCccccCCCceeeehHHHHHHHccHHHHHHHhcCCC-----CCCcccccchHHHHHHHHHHHHhhc------------
Confidence 455 9999999999999999999999999999986431 1233467777999999999999764
Q ss_pred hhccccCCCCCCCCChHHHHHHHHhhCCCCCCcccCCHHHHHHHHHHHHHHHhCCCC-CCCCcCccceEEEEEEEe-cCC
Q 003583 388 ANAATTTDTKQEGIPPRMFKAVIAASHPEFSSMRQQDALEFFLHFVDQVERVHSGKP-EVDPTKSFKFGIEERISC-PSG 465 (809)
Q Consensus 388 ~~~~~~~~~~~~~I~P~~f~~~i~~~~~~F~~~~QQDA~EFl~~LLd~L~~~~~~~~-~~~i~~~F~g~l~~~i~C-~C~ 465 (809)
...+|.|..|...++... .....|||++||++.|+|.|++.+.... ...+.++|.|.+.+.+.| .|.
T Consensus 230 ---------~~k~Vdt~~~~~~~~~~~--~~~~~QqDvqEf~~~l~d~LE~~~~~~~~~~~l~~lf~g~~~~~i~c~~~~ 298 (1093)
T KOG1863|consen 230 ---------KRKYVDTSELTKSLGWDS--NDSFEQQDVQEFLTKLLDWLEDSMIDAKVENTLQDLFTGKMKSVIKCIDVD 298 (1093)
T ss_pred ---------CCCCcCchhhhhhhhccc--ccHHhhhhHHHHHHHHHHHHHhhccchhhhhhhhhhhcCCcceEEEEEeee
Confidence 455899999999987775 5567999999999999999999886554 457889999999999999 999
Q ss_pred CEeeeeecCeeeeeccCCccccchHHHHHHHHHHHhhhccCCCCCcccccCCCccHHHHHhhhcCCcccCc--ccCCCCC
Q 003583 466 KVAYNRRLDYILSLGIPLDEATNKEELAAFQKLKMERISEGKDVTNEEIVRPRVPLEACLSTFSAPEELPD--FYSTALK 543 (809)
Q Consensus 466 ~vs~~~e~~~~LsL~ip~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~sL~~cL~~f~~~E~le~--~~C~~C~ 543 (809)
..+...+.|+++.|++-.. .+|.++|+.|+..|.++| -+|..|.
T Consensus 299 ~~s~r~e~f~d~ql~~~g~----------------------------------~nl~~sf~~y~~~E~l~gdn~~~~~~~ 344 (1093)
T KOG1863|consen 299 FESSRSESFLDLQLNGKGV----------------------------------KNLEDSLHLYFEAEILLGDNKYDAECH 344 (1093)
T ss_pred eeccccccccCccccccch----------------------------------hhHHHHHHHhhhHHHhcCCcccccccc
Confidence 8888999999999987321 369999999999999986 5789999
Q ss_pred CccceeEEeeccccCceeEEEEeeEEEccC-ceeeeceeeecCCCccccccccCC
Q 003583 544 AKTTATKSAGLTSFPDYLVLHMRKFVMEAG-WVPKKLDVYIDVPDIIDISHMRSK 597 (809)
Q Consensus 544 ~~~~a~k~~~i~~lP~vLiI~LkRF~~~~~-~~~~Ki~~~V~fP~~LDL~~~~~~ 597 (809)
..+.|.|...+.+||+||.|||+||.++.. ....|++....||..|+|.+|+..
T Consensus 345 ~~~~a~k~~~f~~lPpvl~~qL~Rf~~~~~~~~~~Ki~d~~~fp~~i~~d~~~~~ 399 (1093)
T KOG1863|consen 345 GLQDAKKGVLFDSLPPVLFIQLMRFEYDFSTGQKIKINDKFEFPLIIDMDRYLSR 399 (1093)
T ss_pred chhhhhcceeeccCCchhhhhhhheeeeccCCceeehhhccCCccccccchhccc
Confidence 999999999999999999999999999853 678899999999999999999764
No 34
>PF13423 UCH_1: Ubiquitin carboxyl-terminal hydrolase
Probab=100.00 E-value=7e-32 Score=292.00 Aligned_cols=224 Identities=19% Similarity=0.207 Sum_probs=191.5
Q ss_pred cccccCCChhhHHHHHHHHhchHHHHHHHhcCCchhhhhccCCCCCCccHHHHHHHHHHHHhcCCCCCChhhhhhhhhcc
Q 003583 312 TGLVNLGNSCYLAATMQVMFSTHAFCTRYYTQEPLKAAFEAAPADPTVDLNMQLTKLAHGLLSGKYSVPAQEKDAAANAA 391 (809)
Q Consensus 312 ~GL~NLGNTCYmNSVLQ~L~~ip~f~~~~l~~~~~~~~~~~~~~~p~~~l~~ql~kL~~~l~sg~ys~~~~~~~~~~~~~ 391 (809)
.||.|-+++||+||+||+|+.+|++|+.++.. . . .....|+.|+|.-||+.|.++
T Consensus 1 ~GlEn~~~nsY~NslLQ~l~f~~~~r~~~l~h-----~-~---c~~e~cL~cELgfLf~ml~~~---------------- 55 (295)
T PF13423_consen 1 SGLENHIPNSYCNSLLQVLYFIPPLRNFLLSH-----L-E---CPKEFCLLCELGFLFDMLDSK---------------- 55 (295)
T ss_pred CCCcCCCCcchHHHHHHHHHhCHHHHHHHHhC-----c-C---CCccccHHHHHHHHHHHhhhh----------------
Confidence 49999999999999999999999999999843 2 1 246789999999999999733
Q ss_pred ccCCCCCCCCChHHHHHHHHhhCCCCCCcccCCHHHHHHHHHHHHHHHhCCCC--------------CCCCcCccceEEE
Q 003583 392 TTTDTKQEGIPPRMFKAVIAASHPEFSSMRQQDALEFFLHFVDQVERVHSGKP--------------EVDPTKSFKFGIE 457 (809)
Q Consensus 392 ~~~~~~~~~I~P~~f~~~i~~~~~~F~~~~QQDA~EFl~~LLd~L~~~~~~~~--------------~~~i~~~F~g~l~ 457 (809)
.....+.+..|...++......+.+.|||.++|+++||++|+.++.... ...+.++|+....
T Consensus 56 ----~~g~~cq~sNflr~l~~~~~a~~l~~~~~iq~~~~Fll~~l~~~~~~~~~~~~~~~~~~~~~~~~~i~~~f~~~~~ 131 (295)
T PF13423_consen 56 ----AKGINCQASNFLRALSWIPEAAALGLQQDIQSLNRFLLEQLSMELLTFKPDIFHTSENSSSSPESSISQLFGTSFE 131 (295)
T ss_pred ----cCCCcChHHHHHHHHhcCHHHHhcchhHHHHHHHHHHHHHHhHHHHhcCcccccccccccCCCcchHHHHhCccee
Confidence 2456778889999887776556667799999999999999999875332 2456789999999
Q ss_pred EEEEe-cCCCEeeeeecCeeeeeccCCccccchHHHHHHHHHHHhhhccCCCCCcccccCCCccHHHHHhhhcCCcccCc
Q 003583 458 ERISC-PSGKVAYNRRLDYILSLGIPLDEATNKEELAAFQKLKMERISEGKDVTNEEIVRPRVPLEACLSTFSAPEELPD 536 (809)
Q Consensus 458 ~~i~C-~C~~vs~~~e~~~~LsL~ip~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~sL~~cL~~f~~~E~le~ 536 (809)
..++| .|+..+.+.+....+.|..|... ..+++.++|+.++..+....
T Consensus 132 ~~~~c~~c~~~~~~~~~~~~~~l~yp~~~-------------------------------~~~tf~~~Le~sl~~e~~~~ 180 (295)
T PF13423_consen 132 TTIRCTSCGHESVKESSTLVLDLPYPPSN-------------------------------SNVTFSQVLEHSLNREQQTR 180 (295)
T ss_pred eeecccccCCeEEeecceeeeeccCCCCC-------------------------------ccchHHHHHHHHHhhccccc
Confidence 99999 99999988888888888777522 13799999999999999988
Q ss_pred ccCCCCCCccceeEEeeccccCceeEEEEeeEEEccCceeeeceeeecCCCccccccccC
Q 003583 537 FYSTALKAKTTATKSAGLTSFPDYLVLHMRKFVMEAGWVPKKLDVYIDVPDIIDISHMRS 596 (809)
Q Consensus 537 ~~C~~C~~~~~a~k~~~i~~lP~vLiI~LkRF~~~~~~~~~Ki~~~V~fP~~LDL~~~~~ 596 (809)
.+|++|++.+....+.+|.++|+||.|.++|+.....| +.|....+.+|..+++..+..
T Consensus 181 a~C~~C~~~~~~~~~r~i~~LPpVL~In~~~~~~~~~w-~~~~~~~~~ip~~i~~~~~~~ 239 (295)
T PF13423_consen 181 AWCEKCNKYQPTEQRRTIRSLPPVLSINLNRYSEEEFW-PKKNWLKIWIPPSINLPHFIA 239 (295)
T ss_pred ccccccccccceeeeeeccCCCcEEEEEccCCCccccc-ccccCCceecceeeecccccc
Confidence 99999999999999999999999999999999998568 899999999999998886643
No 35
>cd02670 Peptidase_C19N A subfamily of Peptidase C19. Peptidase C19 contains ubiquitinyl hydrolases. They are intracellular peptidases that remove ubiquitin molecules from polyubiquinated peptides by cleavage of isopeptide bonds. They hydrolyze bonds involving the carboxyl group of the C-terminal Gly residue of ubiquitin. The purpose of the de-ubiquitination is thought to be editing of the ubiquitin conjugates, which could rescue them from degradation, as well as recycling of the ubiquitin. The ubiquitin/proteasome system is responsible for most protein turnover in the mammalian cell, and with over 50 members, family C19 is one of the largest families of peptidases in the human genome.
Probab=99.97 E-value=7.3e-31 Score=271.81 Aligned_cols=117 Identities=21% Similarity=0.312 Sum_probs=85.6
Q ss_pred ccCCHHHHHHHHHHHHHHHhCCCCCCCCcCccceEEEEEEEecCCCEeeeeecCeeeeeccCCccccchHHHHHHHHHHH
Q 003583 421 RQQDALEFFLHFVDQVERVHSGKPEVDPTKSFKFGIEERISCPSGKVAYNRRLDYILSLGIPLDEATNKEELAAFQKLKM 500 (809)
Q Consensus 421 ~QQDA~EFl~~LLd~L~~~~~~~~~~~i~~~F~g~l~~~i~C~C~~vs~~~e~~~~LsL~ip~~~~~~~~~~~~~~~~~~ 500 (809)
+|||+.|||..|+++|..-+- ...-++|.+-.... -.. .......|+|+||....
T Consensus 22 ~q~D~~e~~~~l~~~~~~~~~----~~~~~~~~~g~~~~----~~~---~~~~e~~l~l~ip~~~~-------------- 76 (241)
T cd02670 22 EQQDPEEFFNFITDKLLMPLL----EPKVDIIHGGKKDQ----DDD---KLVNERLLQIPVPDDDD-------------- 76 (241)
T ss_pred HhcCHHHHHHHHHHHHhhhhh----hHHHHHHhcCcccc----ccc---cccccceEEeecccCCC--------------
Confidence 489999999999999886432 12234554421110 000 22334567777775321
Q ss_pred hhhccCCCCCcccccCCCccHHHHHhhhcCCcccCcccCCCCCCccceeEEeeccccCceeEEEEeeEEEccCceeeece
Q 003583 501 ERISEGKDVTNEEIVRPRVPLEACLSTFSAPEELPDFYSTALKAKTTATKSAGLTSFPDYLVLHMRKFVMEAGWVPKKLD 580 (809)
Q Consensus 501 ~~~~~g~~~~~~~~~~~~~sL~~cL~~f~~~E~le~~~C~~C~~~~~a~k~~~i~~lP~vLiI~LkRF~~~~~~~~~Ki~ 580 (809)
...++|++||+.|+..|. |.++|++|+||||||.++. +...|++
T Consensus 77 ---------------~~~~tLedcLe~~~~~e~--------------------i~~lP~vLiIhLKRF~~~~-~~~~Kl~ 120 (241)
T cd02670 77 ---------------GGGITLEQCLEQYFNNSV--------------------FAKAPSCLIICLKRYGKTE-GKAQKMF 120 (241)
T ss_pred ---------------CCcCCHHHHHHHHhchhh--------------------hhhCCCeEEEEEEccccCC-CcceeCC
Confidence 123799999999998885 8999999999999999985 7789999
Q ss_pred eeecCCCccccccccCCC
Q 003583 581 VYIDVPDIIDISHMRSKG 598 (809)
Q Consensus 581 ~~V~fP~~LDL~~~~~~~ 598 (809)
+.|.||..|||.+|+...
T Consensus 121 ~~I~fP~~Ldl~~~~~~~ 138 (241)
T cd02670 121 KKILIPDEIDIPDFVADD 138 (241)
T ss_pred cEECCCCcCCchhhcccc
Confidence 999999999999997653
No 36
>KOG1864 consensus Ubiquitin-specific protease [Posttranslational modification, protein turnover, chaperones]
Probab=99.96 E-value=4.4e-29 Score=285.73 Aligned_cols=229 Identities=18% Similarity=0.203 Sum_probs=179.0
Q ss_pred CcccccccCCChhhHH--HHHHHHhchHHHHHHHhcCCchhhhhccCCCCCCccHHHHHHHHHHHHhcCCCCCChhhhhh
Q 003583 309 PGYTGLVNLGNSCYLA--ATMQVMFSTHAFCTRYYTQEPLKAAFEAAPADPTVDLNMQLTKLAHGLLSGKYSVPAQEKDA 386 (809)
Q Consensus 309 ~g~~GL~NLGNTCYmN--SVLQ~L~~ip~f~~~~l~~~~~~~~~~~~~~~p~~~l~~ql~kL~~~l~sg~ys~~~~~~~~ 386 (809)
-...|..|.+++|+-| +|.|.+...-.++...+.... ...........+..++..++.....
T Consensus 230 ~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~l~~~~~~~~~------------ 293 (587)
T KOG1864|consen 230 ERVFGTNNFSNTCCCNFQSVEEALYFCRPFREAVLLYLT----SLKRSYIIKEELLTCLLDLFSSISS------------ 293 (587)
T ss_pred ccccCccccCccccccchhhHHHHHhhhhhcccccchhh----cccchhhhhHHHHHHhhhhccchhh------------
Confidence 4578999999999999 999999988888755443210 0000001112222333333222211
Q ss_pred hhhccccCCCCCCCCChHHHHHHHHhhCCCCCCcccCCHHHHHHHHHHHHHHHhCCCC----------------------
Q 003583 387 AANAATTTDTKQEGIPPRMFKAVIAASHPEFSSMRQQDALEFFLHFVDQVERVHSGKP---------------------- 444 (809)
Q Consensus 387 ~~~~~~~~~~~~~~I~P~~f~~~i~~~~~~F~~~~QQDA~EFl~~LLd~L~~~~~~~~---------------------- 444 (809)
.......|.|..|...+++....|..+.|||||||+.++++.+++......
T Consensus 294 -------~~~~~~~i~p~~~~~~~~~~~~~f~~~~qQda~eF~~~l~~~~~e~~~~~~~~~~~~~~~~~~~gn~~~~~~~ 366 (587)
T KOG1864|consen 294 -------RKKLVGRISPTRFISDLIKENELFTNGMQQDAHEFLNFLLNEISETLERESSGTTTKVSPKESDGNSSTSAAS 366 (587)
T ss_pred -------hcccccccCcchhhhhhhhcCCccCchhhccHHHHhhhhccchhhhhhhhccCCcccccccCCCCcccccccc
Confidence 123556799999999999999999999999999999999999987542110
Q ss_pred -----------CCCCcCccceEEEEEEEe-cCCCEeeeeecCeeeeeccCCccccchHHHHHHHHHHHhhhccCCCCCcc
Q 003583 445 -----------EVDPTKSFKFGIEERISC-PSGKVAYNRRLDYILSLGIPLDEATNKEELAAFQKLKMERISEGKDVTNE 512 (809)
Q Consensus 445 -----------~~~i~~~F~g~l~~~i~C-~C~~vs~~~e~~~~LsL~ip~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~ 512 (809)
...++.+|.|++..+..| .|..+++..+.|.+++++++.+.
T Consensus 367 ~~~~~~~~~~~~~~v~~lf~g~l~~et~Clsc~t~T~~de~f~D~~~~v~~de--------------------------- 419 (587)
T KOG1864|consen 367 WTNKGHHKSLRENWVSKLFQGILTNETRCLSCETITSRDEGFLDLSVAVEIDE--------------------------- 419 (587)
T ss_pred ccccccccccchhHHHHhhcCeeeeeeeeccccccccccccccccceeccccc---------------------------
Confidence 034678999999999999 99999999999999999997532
Q ss_pred cccCCCccHHHHHhhhcCCcccCc---ccCCCCCCccceeEEeeccccCceeEEEEeeEEEccC-ceeeeceeeecCCCc
Q 003583 513 EIVRPRVPLEACLSTFSAPEELPD---FYSTALKAKTTATKSAGLTSFPDYLVLHMRKFVMEAG-WVPKKLDVYIDVPDI 588 (809)
Q Consensus 513 ~~~~~~~sL~~cL~~f~~~E~le~---~~C~~C~~~~~a~k~~~i~~lP~vLiI~LkRF~~~~~-~~~~Ki~~~V~fP~~ 588 (809)
..++..||+.|..+|.+.| |.|++|...+.|.|...++.+|.+|+||||||.+... ....|+...|.||.+
T Consensus 420 -----~~si~~~l~~~~~~e~l~g~nky~c~~c~s~qeae~~l~~k~lp~~L~l~Lkrfk~~~~~~~~~kl~~~v~~ple 494 (587)
T KOG1864|consen 420 -----NTSITNLLKSFSSTETLSGENKYSCENCCSLQEAERRLKIKKLPYVLTLHLKRFKYSEQQNRYTKLLYRVVFPLE 494 (587)
T ss_pred -----cccHHHHHHHhcchhhccCCCcccccccCchhhHHHhccccCCcceeeeehhccccccccccccccccccccccc
Confidence 1589999999999999986 9999999999999999999999999999999999852 345799999999998
Q ss_pred cccc
Q 003583 589 IDIS 592 (809)
Q Consensus 589 LDL~ 592 (809)
|.+.
T Consensus 495 l~l~ 498 (587)
T KOG1864|consen 495 LRLK 498 (587)
T ss_pred eeec
Confidence 8876
No 37
>KOG1872 consensus Ubiquitin-specific protease [Posttranslational modification, protein turnover, chaperones]
Probab=99.96 E-value=2.1e-29 Score=270.68 Aligned_cols=340 Identities=19% Similarity=0.256 Sum_probs=226.6
Q ss_pred CcccccccCCChhhHHHHHHHHhchHHHHHHHhcCCchhhhhccCCCCCCccHHHHHHHHHHHHhcCCCCCChhhhhhhh
Q 003583 309 PGYTGLVNLGNSCYLAATMQVMFSTHAFCTRYYTQEPLKAAFEAAPADPTVDLNMQLTKLAHGLLSGKYSVPAQEKDAAA 388 (809)
Q Consensus 309 ~g~~GL~NLGNTCYmNSVLQ~L~~ip~f~~~~l~~~~~~~~~~~~~~~p~~~l~~ql~kL~~~l~sg~ys~~~~~~~~~~ 388 (809)
+-++||.|+|||||||+.+|+|..+|+++..+.......... .......-+...|+.+|+.|.+
T Consensus 103 ~lp~gl~nlgNtcymnrtVq~lk~v~el~~~~s~~~~~~~~~--~t~~~a~~i~~~mR~~f~~~~~-------------- 166 (473)
T KOG1872|consen 103 PLPVGLPNLGNTCYMNRTVQCLKGVPELPDALSLYKRKRGRG--DTWERRRRISIETRTCFRPLCE-------------- 166 (473)
T ss_pred cCCccccchhHHHHhhhhhhhhhcCccCcchhhccchhccCC--chhhhhhhHHHHHHHHHHhhhc--------------
Confidence 345799999999999999999999999988876432111100 0001134567788888888865
Q ss_pred hccccCCCCCCCCChHHHHHHHHhhCCCCCC------cccCCHHHHHHHHHHHHHHHhCCCCCC-----CCcCccceEEE
Q 003583 389 NAATTTDTKQEGIPPRMFKAVIAASHPEFSS------MRQQDALEFFLHFVDQVERVHSGKPEV-----DPTKSFKFGIE 457 (809)
Q Consensus 389 ~~~~~~~~~~~~I~P~~f~~~i~~~~~~F~~------~~QQDA~EFl~~LLd~L~~~~~~~~~~-----~i~~~F~g~l~ 457 (809)
. ..+.|..|.+.+.+-.|+|.- +.||||.|.+..++-.+++.+...... .+...|++.+.
T Consensus 167 --------~-~~v~pi~llqtl~~~~Pqfa~~~~~g~~~qqda~ec~~~~m~~l~~~~~~~~~~~~~~~~~d~~f~~~~~ 237 (473)
T KOG1872|consen 167 --------K-GAVAPINLLQTLSSQYPQFAEWVEYGIYMQQDAAECWMEEPGMLTEALTVATEAPCLEAEAAAGFGAEFS 237 (473)
T ss_pred --------c-CCcchHHHHHHHHHHhHHHHHHhhhhhHHHHHHhHhHHHhhhheeccccccccccchhHHHHHhhccccc
Confidence 2 689999999999999999987 899999999999999999887643322 35677999999
Q ss_pred EEEEe-cCCCEeeee--ecCeeeeeccCCccccchHHHHHHHHHHHhhhccCCCCCcccccCCCccHHHHHhhhcCCccc
Q 003583 458 ERISC-PSGKVAYNR--RLDYILSLGIPLDEATNKEELAAFQKLKMERISEGKDVTNEEIVRPRVPLEACLSTFSAPEEL 534 (809)
Q Consensus 458 ~~i~C-~C~~vs~~~--e~~~~LsL~ip~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~sL~~cL~~f~~~E~l 534 (809)
.++.| ......... +.|..|+..|...- + .+..-|..=+ .|.+
T Consensus 238 ~t~~~~e~e~~~~~~~~E~~~~L~c~i~~~~--~-------------------------------~~k~Gl~~~~-~e~~ 283 (473)
T KOG1872|consen 238 TTMSCSEGEDEGGGAGRELVDQLKCIINKTV--H-------------------------------DMRFGLKSGL-SEEI 283 (473)
T ss_pred cceeeccCcccccccccccccccceEEeeee--c-------------------------------hhhhhhhhhh-hhhh
Confidence 99999 776655553 44444444443211 1 1222222222 2344
Q ss_pred CcccCCCCCCccceeEEeeccccCceeEEEEeeEEEccC-ceeeeceeeecCCCccccccccCCCCCCCCCCCCCCCCCC
Q 003583 535 PDFYSTALKAKTTATKSAGLTSFPDYLVLHMRKFVMEAG-WVPKKLDVYIDVPDIIDISHMRSKGLQPGEELLPEGGPED 613 (809)
Q Consensus 535 e~~~C~~C~~~~~a~k~~~i~~lP~vLiI~LkRF~~~~~-~~~~Ki~~~V~fP~~LDL~~~~~~~~~~~e~~l~~~~~~~ 613 (809)
+ -.++..|......|...|.+||.||.|+..||.+... .+.-|+-..|.||..||.-.++++.++.. +++
T Consensus 284 ~-K~s~~lgr~a~y~k~~~isrlP~ylTvq~vrf~~k~k~~~~akil~~V~fP~~ld~~d~ct~el~~k--~~~------ 354 (473)
T KOG1872|consen 284 Q-KISSILGRPAAYQKVMYISRLPEYLTVQEVRFFSKAKIMVVAKILNAVNFPKDLDQQDLCTPELKKK--LLC------ 354 (473)
T ss_pred h-ccCcccCCChHHHHHhHhhcCcccceEEEEEEEeccccchHHHHHHhccChhhhhHHHhhCHHhhcC--ccc------
Confidence 4 4566778888888999999999999999999999753 45568888999999999999999876541 111
Q ss_pred cccCCCCCCcHHHHHHHHhcCCChHHHHHHHHHhCCccHHHHHHHhhhcCCCCCCCCCCccccccccCChhhhhhhhcCC
Q 003583 614 EVQSNKPVANKDIVSQLVSMGFNHLHCEKAAVNTSNAGVEEAMNWLLSHMDDPDIDMPLSQETQCAAIDQSKVETLLSFG 693 (809)
Q Consensus 614 ~~~~~~~~~~~~~~~ql~~mgf~~~~~~~a~~~t~n~~~e~a~~wl~~h~dd~d~~~p~~~~~~~~~~~~~~~~~l~~mg 693 (809)
-...+..+..-+-+++...+-.. .+++. ..++ +..
T Consensus 355 ---------~r~k~r~~edkk~~~~~~~k~~~----------------------~~~~~------~~~~------~e~-- 389 (473)
T KOG1872|consen 355 ---------RRKKHRKVEDKKKEEDVMPKVKG----------------------AQERL------KEVP------LEG-- 389 (473)
T ss_pred ---------hHHHHHHHHhcCCchhhcccccC----------------------cCccc------cccc------ccc--
Confidence 11111111111111111000000 00000 0000 000
Q ss_pred CCHHHHHHHHHHcCCChhhhccccccCCCCCCCcccccccCCCCCCCCCCCCCCCCceEEEEEEEeeeccCCCccEEEEE
Q 003583 694 FSEEVARNALKASGGDIEKATDWIFNNPDASTSSDMDAATSSTAQTPADAGLPDGGGKYRLFGIVSHIGTSTQCGHYVAH 773 (809)
Q Consensus 694 f~~~~a~~aL~~~~~~~~~a~dwlfs~~dd~~~~~~~~~~~~~~~~~~~~~~~~~~~~Y~L~avI~H~G~s~~sGHYva~ 773 (809)
+.+.+ ..++ ...+.|.|+|||.|+|.|..+|||+++
T Consensus 390 ------------------------~~~~~-------------------~~~s-~~~g~y~l~~vithkgrss~sghy~aw 425 (473)
T KOG1872|consen 390 ------------------------MYNKS-------------------GGKS-RNSGLYDLQLVITHKGRSSKSGHYVAW 425 (473)
T ss_pred ------------------------hhccc-------------------cccc-cccceeeeeEeeeccccccCCCcceEE
Confidence 00000 0011 116789999999999999999999999
Q ss_pred Eee-CCcEEEEeCceeecccC---------CCCCceEEEEEE
Q 003583 774 ILK-DGRWAIFNDNKVGASVD---------PPKEMGYLYFFE 805 (809)
Q Consensus 774 ikk-~~~W~~fND~kV~~~~~---------~~~~~~Yi~~Y~ 805 (809)
+|. ++.|+.|||.+|+.+.. .-+..|||++|+
T Consensus 426 ~r~s~~~w~~fdd~~vs~v~~e~i~~lsgggd~~~ayvllyk 467 (473)
T KOG1872|consen 426 NRVSEDKWGHFDDDMVSFVLGETILSLSGGGDWHSAYVLLYK 467 (473)
T ss_pred EeccCCceeeccccccccccccceeeecCCCccchhhheeec
Confidence 996 67999999999997743 457889999997
No 38
>KOG1871 consensus Ubiquitin-specific protease [Posttranslational modification, protein turnover, chaperones]
Probab=99.93 E-value=4.4e-26 Score=239.04 Aligned_cols=320 Identities=19% Similarity=0.294 Sum_probs=227.3
Q ss_pred CcccccccCCChhhHHHHHHHHhchHHHHHHHhcCCchhhhhccCCCCCCccHHHHHHHHHHHHhcCCCCCChhhhh--h
Q 003583 309 PGYTGLVNLGNSCYLAATMQVMFSTHAFCTRYYTQEPLKAAFEAAPADPTVDLNMQLTKLAHGLLSGKYSVPAQEKD--A 386 (809)
Q Consensus 309 ~g~~GL~NLGNTCYmNSVLQ~L~~ip~f~~~~l~~~~~~~~~~~~~~~p~~~l~~ql~kL~~~l~sg~ys~~~~~~~--~ 386 (809)
..++|+.|-||-|||||+||+|..+++|.+.+-... ............+...+..+...+.+..+........ .
T Consensus 26 i~Prg~ink~n~c~~ns~Lqal~~c~pfy~l~~~i~----~~~~~~~~~stp~lda~~~~~~df~n~~~~k~~r~N~~~~ 101 (420)
T KOG1871|consen 26 IDPRGSINKCNICFMNSILQALLYCSPFYNLLELIK----RADGTVKEGSTPLLDASRPASSDFNNDSDAKLPRKNSLRV 101 (420)
T ss_pred cCCccccccceeEeeHHHHHHHHhCccHHHHHHhhh----hhcCceecccchhHHHHHHHHhhccccchhhhhhhccCCc
Confidence 578999999999999999999999999988764221 1111111223344444444444443322211110000 0
Q ss_pred hhh-----ccccCCCCCCCCChHHHHHHHHhhCCCC---CCcccCCHHHHHHHHHHHHHHHhCCCC--------------
Q 003583 387 AAN-----AATTTDTKQEGIPPRMFKAVIAASHPEF---SSMRQQDALEFFLHFVDQVERVHSGKP-------------- 444 (809)
Q Consensus 387 ~~~-----~~~~~~~~~~~I~P~~f~~~i~~~~~~F---~~~~QQDA~EFl~~LLd~L~~~~~~~~-------------- 444 (809)
+.. ++.........+.|-.+-..++.. +.| ..++|.||.|||.++||.||++.-...
T Consensus 102 ~~~~~~~ses~~~d~~~dav~~d~~~~~l~t~-~~~e~~~~g~qedAeefl~~~ld~lhee~~~v~~~~~~~n~e~t~~~ 180 (420)
T KOG1871|consen 102 PEHVVEKSESNKSDLQGDAVKPDPIYLDLLTM-SRFESLQVGKQEDAEEFLLDNLDFLHEESSEVPTELVPPNDEFTPRG 180 (420)
T ss_pred cccccchhhhhhhcccCccccCCchhhhcccC-CchhhccccccccHHHHHHHHHhhhhHHHHhhhhhhcCCcccccccc
Confidence 000 011223455666666555444332 333 347999999999999999999863210
Q ss_pred ------------------------------------------CCCCcCccceEEEEEEEecCCCEeeeeecCeeeeeccC
Q 003583 445 ------------------------------------------EVDPTKSFKFGIEERISCPSGKVAYNRRLDYILSLGIP 482 (809)
Q Consensus 445 ------------------------------------------~~~i~~~F~g~l~~~i~C~C~~vs~~~e~~~~LsL~ip 482 (809)
...++++|+|++++.+.-...+++.+.+||..|.|+|.
T Consensus 181 ~i~~~n~~n~~s~~e~~~~~~~~~~~~gk~~k~~i~r~~~~~~spiS~ifgg~~rs~l~~~~nkeS~tlqPF~tlqldiq 260 (420)
T KOG1871|consen 181 LINNGNLCNLDSTEEAGLSESSGVQLLGKIQKTDIPRADSFVRSPISEIFGGQLRSVLYQPSNKESATLQPFFTLQLDIQ 260 (420)
T ss_pred cccccccccccchhhcccccCchhhhcCCcccCccCCCCCcccCcHHHhhccccccceeccccccccccCccceeeeeee
Confidence 05688999999999998866677899999999999996
Q ss_pred CccccchHHHHHHHHHHHhhhccCCCCCcccccCCCccHHHHHhhhcCCcccCcccCCCCCCccceeEEeeccccCceeE
Q 003583 483 LDEATNKEELAAFQKLKMERISEGKDVTNEEIVRPRVPLEACLSTFSAPEELPDFYSTALKAKTTATKSAGLTSFPDYLV 562 (809)
Q Consensus 483 ~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~sL~~cL~~f~~~E~le~~~C~~C~~~~~a~k~~~i~~lP~vLi 562 (809)
.+.. .+++++|..+...|.+.+|.-. -|....+.+++.+.+||++|+
T Consensus 261 ~~~i--------------------------------~sv~~ales~~~re~lp~~st~-s~~eV~~s~q~~leklp~vli 307 (420)
T KOG1871|consen 261 SEKI--------------------------------HSVQDALESLVARESLPGYSTK-SGQEVEASSQTTLEKLPPVLI 307 (420)
T ss_pred cccc--------------------------------CCHHHHhhccChhhcccceecC-CCCeechhhhhhHhhcchhhh
Confidence 5442 4789999999999999955444 788889999999999999999
Q ss_pred EEEeeEEEccCceeeeceeeecCCCccccccccC-CCCCCCCCCCCCCCCCCcccCCCCCCcHHHHHHHHhcCCChHHHH
Q 003583 563 LHMRKFVMEAGWVPKKLDVYIDVPDIIDISHMRS-KGLQPGEELLPEGGPEDEVQSNKPVANKDIVSQLVSMGFNHLHCE 641 (809)
Q Consensus 563 I~LkRF~~~~~~~~~Ki~~~V~fP~~LDL~~~~~-~~~~~~e~~l~~~~~~~~~~~~~~~~~~~~~~ql~~mgf~~~~~~ 641 (809)
+|+|||.+...+..+|+...+++|-+|.+..-+- .+++.
T Consensus 308 lhlkrF~ye~tgg~~k~~K~i~~~~~l~i~~~~~s~gvk~---------------------------------------- 347 (420)
T KOG1871|consen 308 LHLKRFVYEKTGGARKLGKKIEYPWTLKISKNCFSQGLKI---------------------------------------- 347 (420)
T ss_pred hhhhHHHHHhccchhhhchhhhccceeeechhhhccccch----------------------------------------
Confidence 9999999986677889999999998887762211 11100
Q ss_pred HHHHHhCCccHHHHHHHhhhcCCCCCCCCCCccccccccCChhhhhhhhcCCCCHHHHHHHHHHcCCChhhhccccccCC
Q 003583 642 KAAVNTSNAGVEEAMNWLLSHMDDPDIDMPLSQETQCAAIDQSKVETLLSFGFSEEVARNALKASGGDIEKATDWIFNNP 721 (809)
Q Consensus 642 ~a~~~t~n~~~e~a~~wl~~h~dd~d~~~p~~~~~~~~~~~~~~~~~l~~mgf~~~~a~~aL~~~~~~~~~a~dwlfs~~ 721 (809)
.+
T Consensus 348 ----~~-------------------------------------------------------------------------- 349 (420)
T KOG1871|consen 348 ----RI-------------------------------------------------------------------------- 349 (420)
T ss_pred ----hh--------------------------------------------------------------------------
Confidence 00
Q ss_pred CCCCCcccccccCCCCCCCCCCCCCCCCceEEEEEEEeeeccCCCccEEEEEEee--CCcEEEEeCceeecccC------
Q 003583 722 DASTSSDMDAATSSTAQTPADAGLPDGGGKYRLFGIVSHIGTSTQCGHYVAHILK--DGRWAIFNDNKVGASVD------ 793 (809)
Q Consensus 722 dd~~~~~~~~~~~~~~~~~~~~~~~~~~~~Y~L~avI~H~G~s~~sGHYva~ikk--~~~W~~fND~kV~~~~~------ 793 (809)
......|+|.|+|-|.|+|+..|||..-+.+ -+.|+.++|..|..+.+
T Consensus 350 ------------------------~~~~~~yks~~vvyhtgtsatvghYl~dv~~s~~~gw~rIDD~~i~~v~q~dv~~~ 405 (420)
T KOG1871|consen 350 ------------------------LIATRPYKSLAVVYHTGTSATVGHYLEDVSRSVPSGWQRIDDALILFVAQEDVEKV 405 (420)
T ss_pred ------------------------hccccccceEEEEEecccccccCceEEeeeecccCceeEeccceeeeccHhhhccc
Confidence 0113469999999999999999999999886 47899999999996633
Q ss_pred CCCCceEEEEEEecC
Q 003583 794 PPKEMGYLYFFERLN 808 (809)
Q Consensus 794 ~~~~~~Yi~~Y~R~~ 808 (809)
.....+|++.|+|.+
T Consensus 406 t~~r~~yllyY~~~d 420 (420)
T KOG1871|consen 406 TGSRTPYLLYYIEAD 420 (420)
T ss_pred cCccchheeEeeecC
Confidence 356779999999865
No 39
>PF02148 zf-UBP: Zn-finger in ubiquitin-hydrolases and other protein; InterPro: IPR001607 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule. Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. This entry represents UBP-type zinc finger domains, which display some similarity with the Zn-binding domain of the insulinase family. The UBP-type zinc finger domain is found only in a small subfamily of ubiquitin C-terminal hydrolases (deubiquitinases or UBP) [, ], All members of this subfamily are isopeptidase-T, which are known to cleave isopeptide bonds between ubiquitin moieties. Some of the proteins containing an UBP zinc finger include: Homo sapiens (Human) deubiquitinating enzyme 13 (UBPD) Human deubiquitinating enzyme 5 (UBP5) Dictyostelium discoideum (Slime mold) deubiquitinating enzyme A (UBPA) Saccharomyces cerevisiae (Baker's yeast) deubiquitinating enzyme 8 (UBP8) Yeast deubiquitinating enzyme 14 (UBP14) More information about these proteins can be found at Protein of the Month: Zinc Fingers [].; GO: 0008270 zinc ion binding; PDB: 3GV4_A 3PHD_B 3C5K_A 2UZG_A 3IHP_B 2G43_B 2G45_D 2I50_A 3MHH_A 3MHS_A ....
Probab=99.67 E-value=3e-17 Score=134.53 Aligned_cols=62 Identities=52% Similarity=0.932 Sum_probs=52.2
Q ss_pred ccccCCC-CCeEEecccCcccccCCcCCCCCCCchHhhHhhhcCccEEEeeCccccCCCCcEEEeccCCCcccchh
Q 003583 184 CAKCDKR-DNLWLNLTDGMILCGRRNWDGTGGNNHAVEHYKETGYPLAVKLGTITSDLEGADVFSYPEDDSVVDPL 258 (809)
Q Consensus 184 C~~C~~~-~~lw~CL~Cg~~~Cgr~~~~g~~gn~ha~~H~~~~~H~~~v~lgtit~~~~~~~v~cy~cd~~v~d~~ 258 (809)
|+.|+.. .++|+||+||++||||++ ++||+.|+++++|+++|++. +..||||+|+++|.||.
T Consensus 1 C~~C~~~~~~lw~CL~Cg~~~C~~~~------~~Ha~~H~~~~~H~l~v~~~-------~~~i~C~~C~~~v~~~~ 63 (63)
T PF02148_consen 1 CSVCGSTNSNLWLCLTCGYVGCGRYS------NGHALKHYKETGHPLAVSLS-------TGSIWCYACDDYVYDPE 63 (63)
T ss_dssp -SSSHTCSSSEEEETTTS-EEETTTS------TSHHHHHHHHHT--EEEETT-------TTCEEETTTTEEEESTT
T ss_pred CCCCCCcCCceEEeCCCCcccccCCc------CcHHHHhhcccCCeEEEECC-------CCeEEEcCCCcEEeCCC
Confidence 7788877 899999999999999874 58999999999999999883 77899999999999863
No 40
>KOG1275 consensus PAB-dependent poly(A) ribonuclease, subunit PAN2 [Replication, recombination and repair]
Probab=99.63 E-value=2.1e-15 Score=171.97 Aligned_cols=228 Identities=15% Similarity=0.091 Sum_probs=147.2
Q ss_pred CCcccccccCCChhhHHHHHHHHhchHHHHHHHhcCCchhhhhccCCCCCCccHHHHHHHHHHHHhcCCCCCChhhhhhh
Q 003583 308 GPGYTGLVNLGNSCYLAATMQVMFSTHAFCTRYYTQEPLKAAFEAAPADPTVDLNMQLTKLAHGLLSGKYSVPAQEKDAA 387 (809)
Q Consensus 308 ~~g~~GL~NLGNTCYmNSVLQ~L~~ip~f~~~~l~~~~~~~~~~~~~~~p~~~l~~ql~kL~~~l~sg~ys~~~~~~~~~ 387 (809)
...+.||.--+-.-|-|++||+|+.+|++|...+... .....|+.|+|.-||.+|-+..-.
T Consensus 496 qT~yaGLe~~i~N~YcNamiQllyfl~~~r~~vl~H~----------C~~e~CL~CELGFLF~Ml~~S~G~--------- 556 (1118)
T KOG1275|consen 496 QTTYAGLETDIPNSYCNAMIQLLYFLPPIRSIVLRHI----------CTKEFCLLCELGFLFTMLDSSTGD--------- 556 (1118)
T ss_pred cceeeccCCCCchHHHHHHHHHHHhccHHHHHHHcCc----------cchhHHHHHHHHHHHHHHhhhcCC---------
Confidence 3467899999999999999999999999999998532 135679999999999988663211
Q ss_pred hhccccCCCCCCCCChHHHHHHHHhh---------------------------CCCC---CCcccCCHHHHHHHHHHHHH
Q 003583 388 ANAATTTDTKQEGIPPRMFKAVIAAS---------------------------HPEF---SSMRQQDALEFFLHFVDQVE 437 (809)
Q Consensus 388 ~~~~~~~~~~~~~I~P~~f~~~i~~~---------------------------~~~F---~~~~QQDA~EFl~~LLd~L~ 437 (809)
+.....|..++... ...| .+.+-+|.++|.........
T Consensus 557 ------------~Cqa~NFlraf~t~~~a~~LG~vl~d~~~~~~~~~~~liq~~~~~~~set~~~~d~~~~~~~~~s~~~ 624 (1118)
T KOG1275|consen 557 ------------PCQANNFLRAFRTNPEASALGLVLSDTQISGTVNDDVLIQDAEGFISSETSRHLDCQDCRGLQQSESV 624 (1118)
T ss_pred ------------ccchhHHHHHHhhChHhhhhcccccchhhccccchHHHhhhhhhccchhhhhhhhHHHhhhhhhhhcc
Confidence 22222222222111 1111 11244555555554444333
Q ss_pred HHhCCC--CCCCCcCccceEEEEEEEe-cCCCEeeeeecCeeeeeccCCccccchHHHHHHHHHHHhhhccCCCCCcccc
Q 003583 438 RVHSGK--PEVDPTKSFKFGIEERISC-PSGKVAYNRRLDYILSLGIPLDEATNKEELAAFQKLKMERISEGKDVTNEEI 514 (809)
Q Consensus 438 ~~~~~~--~~~~i~~~F~g~l~~~i~C-~C~~vs~~~e~~~~LsL~ip~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~ 514 (809)
...... ....+.++|...++.+..| .|+..+.+......+.|..|.....+.
T Consensus 625 ~~~~~~vn~~~~l~q~F~~~~e~~~~Cg~C~~~~~~~k~l~~~~lsyp~~~~id~------------------------- 679 (1118)
T KOG1275|consen 625 DGESFKVNYAPVLQQSFCQEIEKSLRCGECGDEKQKSKSLLRKVLSYPNVLLIDT------------------------- 679 (1118)
T ss_pred cCceeeecchhHHHHHhhhHHHHhhhcccccchhhhhhhhhheeecCCCccchhh-------------------------
Confidence 222111 1246789999999999999 999988877766677777765432110
Q ss_pred cCCCccHHHHHhhhcCC-cccCcccCCCCCCccceeEEeeccccCceeEEEEeeEEEcc-Cceee--eceeeecCCCccc
Q 003583 515 VRPRVPLEACLSTFSAP-EELPDFYSTALKAKTTATKSAGLTSFPDYLVLHMRKFVMEA-GWVPK--KLDVYIDVPDIID 590 (809)
Q Consensus 515 ~~~~~sL~~cL~~f~~~-E~le~~~C~~C~~~~~a~k~~~i~~lP~vLiI~LkRF~~~~-~~~~~--Ki~~~V~fP~~LD 590 (809)
....-.+...|++-... +.+. -+|+.|++......+..+..||++|.|...-+.... +|-.+ |.-..|-+|+++-
T Consensus 680 ~~~~~~F~~iL~R~l~l~kn~~-~~C~~C~k~ep~~q~~~vr~LPd~L~in~~~~~~~~~~~~a~q~~~~~~vWLP~~~~ 758 (1118)
T KOG1275|consen 680 LAKSNNFVEILKRSLSLFKNKQ-AWCETCTKPEPTSQKKNVRSLPDCLSINTCLNVHELVDFWARQNKLLEDVWLPEWFH 758 (1118)
T ss_pred cccccchHHHhhhhhhcccccc-cccccccCCCCcccccccccCcceeeeeeeccchhhhhhHHHhhccccccccchhee
Confidence 00012344455543322 2233 699999999999999999999999999988877753 33333 4456667777766
Q ss_pred cc
Q 003583 591 IS 592 (809)
Q Consensus 591 L~ 592 (809)
|.
T Consensus 759 ~~ 760 (1118)
T KOG1275|consen 759 MI 760 (1118)
T ss_pred EE
Confidence 65
No 41
>KOG0804 consensus Cytoplasmic Zn-finger protein BRAP2 (BRCA1 associated protein) [General function prediction only]
Probab=99.60 E-value=1.8e-16 Score=169.11 Aligned_cols=105 Identities=25% Similarity=0.423 Sum_probs=87.1
Q ss_pred HHHHHHHHHHHh--ccChhHHHHHHhhhhcCCCCCcccccccccCCCcccCCCCccccccCCCCCeEEecccCcccccCC
Q 003583 130 EKVRLAVDAILM--AEGAERKEQVAAWTADKKQTSAYAMNLQQIDNGVIIPPSGWKCAKCDKRDNLWLNLTDGMILCGRR 207 (809)
Q Consensus 130 ~~~~~~~~~i~~--~~~~~~~~~~~~w~~~~~~~c~h~~~l~q~~~~~~~~~~~~~C~~C~~~~~lw~CL~Cg~~~Cgr~ 207 (809)
|++...+.+|+. ..-+.+..++..|....+++|+|+.. +. ......|..|+.+.|||+||.||++||||+
T Consensus 183 ERMD~s~~gi~t~~c~Hsfh~~cl~~w~~~scpvcR~~q~----p~----~ve~~~c~~c~~~~~LwicliCg~vgcgrY 254 (493)
T KOG0804|consen 183 ERMDSSTTGILTILCNHSFHCSCLMKWWDSSCPVCRYCQS----PS----VVESSLCLACGCTEDLWICLICGNVGCGRY 254 (493)
T ss_pred hhcCccccceeeeecccccchHHHhhcccCcChhhhhhcC----cc----hhhhhhhhhhcccccEEEEEEccceecccc
Confidence 555666666664 23377889999999888999999853 21 122368999999999999999999999999
Q ss_pred cCCCCCCCchHhhHhhhcCccEEEeeCccccCCCCcEEEeccCCCccc
Q 003583 208 NWDGTGGNNHAVEHYKETGYPLAVKLGTITSDLEGADVFSYPEDDSVV 255 (809)
Q Consensus 208 ~~~g~~gn~ha~~H~~~~~H~~~v~lgtit~~~~~~~v~cy~cd~~v~ 255 (809)
.- +||.+||++|+|++++.|+ +.+||.|+.|.||.
T Consensus 255 ~e------ghA~rHweet~H~yalel~-------tqrVWDYAGDnYVh 289 (493)
T KOG0804|consen 255 KE------GHARRHWEETGHCYALELE-------TQRVWDYAGDNYVH 289 (493)
T ss_pred cc------hhHHHHHHhhcceEEEeec-------ceeeeecccchhhh
Confidence 54 8999999999999999984 89999999999994
No 42
>smart00290 ZnF_UBP Ubiquitin Carboxyl-terminal Hydrolase-like zinc finger.
Probab=99.11 E-value=7.2e-11 Score=92.28 Aligned_cols=48 Identities=54% Similarity=0.989 Sum_probs=43.2
Q ss_pred cccccCCCCCeEEecccCcccccCCcCCCCCCCchHhhHhhhcCccEEEeeCcc
Q 003583 183 KCAKCDKRDNLWLNLTDGMILCGRRNWDGTGGNNHAVEHYKETGYPLAVKLGTI 236 (809)
Q Consensus 183 ~C~~C~~~~~lw~CL~Cg~~~Cgr~~~~g~~gn~ha~~H~~~~~H~~~v~lgti 236 (809)
+|..|+...++|+||+||++||||.. .+|++.|+++++|++++++.++
T Consensus 1 ~C~~C~~~~~l~~CL~C~~~~c~~~~------~~h~~~H~~~t~H~~~~~~~~~ 48 (50)
T smart00290 1 RCSVCGTIENLWLCLTCGQVGCGRYQ------LGHALEHFEETGHPLVVKLGTQ 48 (50)
T ss_pred CcccCCCcCCeEEecCCCCcccCCCC------CcHHHHHhhhhCCCEEEEcccc
Confidence 59999999999999999999999974 4799999999999999988643
No 43
>PF00627 UBA: UBA/TS-N domain; InterPro: IPR000449 UBA domains are a commonly occurring sequence motif of approximately 45 amino acid residues that are found in diverse proteins involved in the ubiquitin/proteasome pathway, DNA excision-repair, and cell signalling via protein kinases []. The human homologue of yeast Rad23A is one example of a nucleotide excision-repair protein that contains both an internal and a C-terminal UBA domain. The solution structure of human Rad23A UBA(2) showed that the domain forms a compact three-helix bundle []. Comparison of the structures of UBA(1) and UBA(2) reveals that both form very similar folds and have a conserved large hydrophobic surface patch which may be a common protein-interacting surface present in diverse UBA domains. Evidence that ubiquitin binds to UBA domains leads to the prediction that the hydrophobic surface patch of UBA domains interacts with the hydrophobic surface on the five-stranded beta-sheet of ubiquitin []. This domain is similar in sequence to the N-terminal domain of translation elongation factor EF1B (or EF-Ts) from bacteria, mitochondria and chloroplasts. More information about EF1B (EF-Ts) proteins can be found at Protein of the Month: Elongation Factors [].; GO: 0005515 protein binding; PDB: 2DAI_A 2OO9_C 2JUJ_A 1WHC_A 1YLA_A 2O25_B 3K9O_A 3K9P_A 3F92_A 3E46_A ....
Probab=98.36 E-value=1.6e-07 Score=68.25 Aligned_cols=37 Identities=51% Similarity=0.973 Sum_probs=33.9
Q ss_pred CChhhhhhhhcCCCCHHHHHHHHHHcCCChhhhcccc
Q 003583 681 IDQSKVETLLSFGFSEEVARNALKASGGDIEKATDWI 717 (809)
Q Consensus 681 ~~~~~~~~l~~mgf~~~~a~~aL~~~~~~~~~a~dwl 717 (809)
++++.|.+|++|||+++++++||+.++||+++|++||
T Consensus 1 i~~~~v~~L~~mGf~~~~~~~AL~~~~~nve~A~~~L 37 (37)
T PF00627_consen 1 IDEEKVQQLMEMGFSREQAREALRACNGNVERAVDWL 37 (37)
T ss_dssp SHHHHHHHHHHHTS-HHHHHHHHHHTTTSHHHHHHHH
T ss_pred CCHHHHHHHHHcCCCHHHHHHHHHHcCCCHHHHHHhC
Confidence 3578999999999999999999999999999999997
No 44
>PF00627 UBA: UBA/TS-N domain; InterPro: IPR000449 UBA domains are a commonly occurring sequence motif of approximately 45 amino acid residues that are found in diverse proteins involved in the ubiquitin/proteasome pathway, DNA excision-repair, and cell signalling via protein kinases []. The human homologue of yeast Rad23A is one example of a nucleotide excision-repair protein that contains both an internal and a C-terminal UBA domain. The solution structure of human Rad23A UBA(2) showed that the domain forms a compact three-helix bundle []. Comparison of the structures of UBA(1) and UBA(2) reveals that both form very similar folds and have a conserved large hydrophobic surface patch which may be a common protein-interacting surface present in diverse UBA domains. Evidence that ubiquitin binds to UBA domains leads to the prediction that the hydrophobic surface patch of UBA domains interacts with the hydrophobic surface on the five-stranded beta-sheet of ubiquitin []. This domain is similar in sequence to the N-terminal domain of translation elongation factor EF1B (or EF-Ts) from bacteria, mitochondria and chloroplasts. More information about EF1B (EF-Ts) proteins can be found at Protein of the Month: Elongation Factors [].; GO: 0005515 protein binding; PDB: 2DAI_A 2OO9_C 2JUJ_A 1WHC_A 1YLA_A 2O25_B 3K9O_A 3K9P_A 3F92_A 3E46_A ....
Probab=98.31 E-value=8.5e-07 Score=64.48 Aligned_cols=37 Identities=32% Similarity=0.605 Sum_probs=34.0
Q ss_pred CcHHHHHHHHhcCCChHHHHHHHHHhCCccHHHHHHHh
Q 003583 622 ANKDIVSQLVSMGFNHLHCEKAAVNTSNAGVEEAMNWL 659 (809)
Q Consensus 622 ~~~~~~~ql~~mgf~~~~~~~a~~~t~n~~~e~a~~wl 659 (809)
+|++.|.+|++|||+++.|++||..++| +++.|++||
T Consensus 1 i~~~~v~~L~~mGf~~~~~~~AL~~~~~-nve~A~~~L 37 (37)
T PF00627_consen 1 IDEEKVQQLMEMGFSREQAREALRACNG-NVERAVDWL 37 (37)
T ss_dssp SHHHHHHHHHHHTS-HHHHHHHHHHTTT-SHHHHHHHH
T ss_pred CCHHHHHHHHHcCCCHHHHHHHHHHcCC-CHHHHHHhC
Confidence 4688999999999999999999999999 999999997
No 45
>cd00194 UBA Ubiquitin Associated domain. The UBA domain is a commonly occurring sequence motif in some members of the ubiquitination pathway, UV excision repair proteins, and certain protein kinases. Although its specific role is so far unknown, it has been suggested that UBA domains are involved in conferring protein target specificity. The domain, a compact three helix bundle, has a conserved GFP-loop and the proline is thought to be critical for binding. The UBA domain is distinct from the conserved three helical domain seen in the N-terminus of EF-TS and eukaryotic NAC proteins.
Probab=98.18 E-value=1.1e-06 Score=64.23 Aligned_cols=37 Identities=43% Similarity=0.869 Sum_probs=35.1
Q ss_pred hhhhhhhhcCCCCHHHHHHHHHHcCCChhhhcccccc
Q 003583 683 QSKVETLLSFGFSEEVARNALKASGGDIEKATDWIFN 719 (809)
Q Consensus 683 ~~~~~~l~~mgf~~~~a~~aL~~~~~~~~~a~dwlfs 719 (809)
++.++.|++|||++++++.||+.+++|+++|++|||+
T Consensus 2 ~~~v~~L~~mGf~~~~~~~AL~~~~~d~~~A~~~L~~ 38 (38)
T cd00194 2 EEKLEQLLEMGFSREEARKALRATNNNVERAVEWLLE 38 (38)
T ss_pred HHHHHHHHHcCCCHHHHHHHHHHhCCCHHHHHHHHhC
Confidence 5789999999999999999999999999999999985
No 46
>smart00165 UBA Ubiquitin associated domain. Present in Rad23, SNF1-like kinases. The newly-found UBA in p62 is known to bind ubiquitin.
Probab=98.15 E-value=1.5e-06 Score=63.22 Aligned_cols=36 Identities=39% Similarity=0.791 Sum_probs=34.4
Q ss_pred hhhhhhhhcCCCCHHHHHHHHHHcCCChhhhccccc
Q 003583 683 QSKVETLLSFGFSEEVARNALKASGGDIEKATDWIF 718 (809)
Q Consensus 683 ~~~~~~l~~mgf~~~~a~~aL~~~~~~~~~a~dwlf 718 (809)
++.++.|++|||++++++.||+.+++|+++|++|||
T Consensus 2 ~~~v~~L~~mGf~~~~a~~aL~~~~~d~~~A~~~L~ 37 (37)
T smart00165 2 EEKIDQLLEMGFSREEALKALRAANGNVERAAEYLL 37 (37)
T ss_pred HHHHHHHHHcCCCHHHHHHHHHHhCCCHHHHHHHHC
Confidence 578999999999999999999999999999999996
No 47
>smart00165 UBA Ubiquitin associated domain. Present in Rad23, SNF1-like kinases. The newly-found UBA in p62 is known to bind ubiquitin.
Probab=98.08 E-value=6e-06 Score=60.02 Aligned_cols=37 Identities=32% Similarity=0.519 Sum_probs=34.1
Q ss_pred cHHHHHHHHhcCCChHHHHHHHHHhCCccHHHHHHHhh
Q 003583 623 NKDIVSQLVSMGFNHLHCEKAAVNTSNAGVEEAMNWLL 660 (809)
Q Consensus 623 ~~~~~~ql~~mgf~~~~~~~a~~~t~n~~~e~a~~wl~ 660 (809)
+++.+++|.+|||+++.|++|+..+++ +++.|++|||
T Consensus 1 ~~~~v~~L~~mGf~~~~a~~aL~~~~~-d~~~A~~~L~ 37 (37)
T smart00165 1 DEEKIDQLLEMGFSREEALKALRAANG-NVERAAEYLL 37 (37)
T ss_pred CHHHHHHHHHcCCCHHHHHHHHHHhCC-CHHHHHHHHC
Confidence 357899999999999999999999998 6999999996
No 48
>cd00194 UBA Ubiquitin Associated domain. The UBA domain is a commonly occurring sequence motif in some members of the ubiquitination pathway, UV excision repair proteins, and certain protein kinases. Although its specific role is so far unknown, it has been suggested that UBA domains are involved in conferring protein target specificity. The domain, a compact three helix bundle, has a conserved GFP-loop and the proline is thought to be critical for binding. The UBA domain is distinct from the conserved three helical domain seen in the N-terminus of EF-TS and eukaryotic NAC proteins.
Probab=98.07 E-value=7e-06 Score=60.02 Aligned_cols=37 Identities=41% Similarity=0.674 Sum_probs=34.6
Q ss_pred HHHHHHHHhcCCChHHHHHHHHHhCCccHHHHHHHhhh
Q 003583 624 KDIVSQLVSMGFNHLHCEKAAVNTSNAGVEEAMNWLLS 661 (809)
Q Consensus 624 ~~~~~ql~~mgf~~~~~~~a~~~t~n~~~e~a~~wl~~ 661 (809)
++.+++|++|||++.+|++|+..+++ +++.|++||++
T Consensus 2 ~~~v~~L~~mGf~~~~~~~AL~~~~~-d~~~A~~~L~~ 38 (38)
T cd00194 2 EEKLEQLLEMGFSREEARKALRATNN-NVERAVEWLLE 38 (38)
T ss_pred HHHHHHHHHcCCCHHHHHHHHHHhCC-CHHHHHHHHhC
Confidence 56899999999999999999999998 89999999984
No 49
>smart00290 ZnF_UBP Ubiquitin Carboxyl-terminal Hydrolase-like zinc finger.
Probab=97.37 E-value=0.00015 Score=56.54 Aligned_cols=35 Identities=23% Similarity=0.284 Sum_probs=31.5
Q ss_pred CcEEeccCccccC----cchHhhhhhccCCcEEEEEEEE
Q 003583 40 GLFVDLNSFLAYG----KDHVGWNFEKTGNPVYLHIKQT 74 (809)
Q Consensus 40 gl~vcl~~f~~~~----~~~~~~~~~~~~~~~~l~~~~~ 74 (809)
.|+|||.|++.+| ..|+..|++.++|++|+++++-
T Consensus 10 ~l~~CL~C~~~~c~~~~~~h~~~H~~~t~H~~~~~~~~~ 48 (50)
T smart00290 10 NLWLCLTCGQVGCGRYQLGHALEHFEETGHPLVVKLGTQ 48 (50)
T ss_pred CeEEecCCCCcccCCCCCcHHHHHhhhhCCCEEEEcccc
Confidence 4999999999876 5799999999999999999764
No 50
>PF15499 Peptidase_C98: Ubiquitin-specific peptidase-like, SUMO isopeptidase
Probab=97.32 E-value=0.0011 Score=67.93 Aligned_cols=39 Identities=23% Similarity=0.406 Sum_probs=31.5
Q ss_pred ceEEEEEEEeeeccCCCccEEEEEEee-CCcEEEEeCceeecc
Q 003583 750 GKYRLFGIVSHIGTSTQCGHYVAHILK-DGRWAIFNDNKVGAS 791 (809)
Q Consensus 750 ~~Y~L~avI~H~G~s~~sGHYva~ikk-~~~W~~fND~kV~~~ 791 (809)
..|++.+||--.-. --|+|++|++ +|.|..+||-|=-.+
T Consensus 217 ~~Y~Vt~VIQY~~~---~~HFvtWi~~~dGsWLecDDLkgp~~ 256 (275)
T PF15499_consen 217 CLYQVTSVIQYQAN---LNHFVTWIRDSDGSWLECDDLKGPCC 256 (275)
T ss_pred eeEEEEEEEEEecc---CceeEEEEEcCCCCeEeeccCCCcch
Confidence 46999999986543 3499999997 789999999875533
No 51
>KOG2561 consensus Adaptor protein NUB1, contains UBA domain [Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=97.28 E-value=0.00052 Score=74.78 Aligned_cols=97 Identities=26% Similarity=0.409 Sum_probs=73.8
Q ss_pred CcHHHHHHHHhcCCChHHHHHHHHHhCCccHHHHHHHhhhcCCCCCCCCCCccccccccCChhhhhhhhcCCCCHHHHHH
Q 003583 622 ANKDIVSQLVSMGFNHLHCEKAAVNTSNAGVEEAMNWLLSHMDDPDIDMPLSQETQCAAIDQSKVETLLSFGFSEEVARN 701 (809)
Q Consensus 622 ~~~~~~~ql~~mgf~~~~~~~a~~~t~n~~~e~a~~wl~~h~dd~d~~~p~~~~~~~~~~~~~~~~~l~~mgf~~~~a~~ 701 (809)
+|+..+..|.+|||....+..|+..+.| +...|.+-+..+-|.-.-+.| .....++...+..|+.|||++-.|+.
T Consensus 374 vn~rs~~rL~~mGyer~la~eaL~r~~N-di~~aldllq~esdel~~n~~----~~p~~vd~~~la~Lv~mGF~e~~A~~ 448 (568)
T KOG2561|consen 374 VNPRSLERLVSMGYERELAAEALRRNEN-DIQKALDLLQDESDELESNKP----KRPEQVDGISLAELVSMGFEEGKARS 448 (568)
T ss_pred cCHHHHHHHHhcchHhHHHHHHHHhccC-cHHHHHHhcCCcchhhhccCC----CCCcccchhhHHHHHHhccccchHHH
Confidence 6888999999999999999999999887 444444444433332111222 11245788999999999999999999
Q ss_pred HHHHcCCChhhhccccccCCCC
Q 003583 702 ALKASGGDIEKATDWIFNNPDA 723 (809)
Q Consensus 702 aL~~~~~~~~~a~dwlfs~~dd 723 (809)
||+...|+++.|+..|..+...
T Consensus 449 ALe~~gnn~~~a~~~L~~s~~n 470 (568)
T KOG2561|consen 449 ALEAGGNNEDTAQRLLSASVAN 470 (568)
T ss_pred HHHhcCCcHHHHHHHHHHhCCC
Confidence 9999999999999987555443
No 52
>KOG0944 consensus Ubiquitin-specific protease UBP14 [Posttranslational modification, protein turnover, chaperones]
Probab=97.23 E-value=0.00024 Score=80.98 Aligned_cols=52 Identities=38% Similarity=0.583 Sum_probs=46.0
Q ss_pred CCcHHHHHHHHhcCCChHHHHHHHHHhCCccHHHHHHHhhhcCCCCCCCCCCc
Q 003583 621 VANKDIVSQLVSMGFNHLHCEKAAVNTSNAGVEEAMNWLLSHMDDPDIDMPLS 673 (809)
Q Consensus 621 ~~~~~~~~ql~~mgf~~~~~~~a~~~t~n~~~e~a~~wl~~h~dd~d~~~p~~ 673 (809)
+++++.+..+.+|||+++.|++|+.+++| ++|.|.+|||+|||++-.+.+++
T Consensus 633 ~~~e~~v~si~smGf~~~qa~~aL~~~n~-nveravDWif~h~d~~~ed~~~~ 684 (763)
T KOG0944|consen 633 EVDEESVASIVSMGFSRNQAIKALKATNN-NVERAVDWIFSHMDIPVEDAAEG 684 (763)
T ss_pred CCChhHheeeeeecCcHHHHHHHHHhcCc-cHHHHHHHHHhcccccccccCcC
Confidence 58999999999999999999999999876 89999999999999765555553
No 53
>COG5207 UBP14 Isopeptidase T [Posttranslational modification, protein turnover, chaperones]
Probab=97.08 E-value=0.00046 Score=76.12 Aligned_cols=64 Identities=33% Similarity=0.524 Sum_probs=54.7
Q ss_pred CCCCCCCCCccccccccCChhhhhhhhcCCCCHHHHHHHHHHcCC-ChhhhccccccCCCCCCCc
Q 003583 664 DDPDIDMPLSQETQCAAIDQSKVETLLSFGFSEEVARNALKASGG-DIEKATDWIFNNPDASTSS 727 (809)
Q Consensus 664 dd~d~~~p~~~~~~~~~~~~~~~~~l~~mgf~~~~a~~aL~~~~~-~~~~a~dwlfs~~dd~~~~ 727 (809)
+||.-.+-||....+...++.+|++|++|||+...+.+||-.+.| |.|.|..|||.||||.+-.
T Consensus 540 ~~PqtEn~LPdedE~~t~Nqs~I~qL~~mGfp~~~~~rAL~~tgNqDaEsAMNWLFqHMdDPdln 604 (749)
T COG5207 540 FDPQTENLLPDEDEAFTDNQSLIRQLVDMGFPEEDAARALGITGNQDAESAMNWLFQHMDDPDLN 604 (749)
T ss_pred cCCcccccCCccccccCchHHHHHHHHHcCCCHHHHHHHHhhccCcchHHHHHHHHhhccCcccC
Confidence 566655556766666778899999999999999999999999977 7999999999999998764
No 54
>TIGR00601 rad23 UV excision repair protein Rad23. All proteins in this family for which functions are known are components of a multiprotein complex used for targeting nucleotide excision repair to specific parts of the genome. In humans, Rad23 complexes with the XPC protein. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=97.02 E-value=0.0017 Score=72.25 Aligned_cols=41 Identities=20% Similarity=0.318 Sum_probs=37.7
Q ss_pred hhhhhhhhcCCCCHHHHHHHHHHcCCChhhhccccccCCCC
Q 003583 683 QSKVETLLSFGFSEEVARNALKASGGDIEKATDWIFNNPDA 723 (809)
Q Consensus 683 ~~~~~~l~~mgf~~~~a~~aL~~~~~~~~~a~dwlfs~~dd 723 (809)
.++|+.|.+|||++..+..|-.+++.|.+.|+.+||++..|
T Consensus 338 ~~AIeRL~~LGF~r~~viqaY~ACdKNEelAAn~Lf~~~~~ 378 (378)
T TIGR00601 338 KEAIERLCALGFDRGLVIQAYFACDKNEELAANYLLSQNFD 378 (378)
T ss_pred HHHHHHHHHcCCCHHHHHHHHHhcCCcHHHHHHHHHhhcCC
Confidence 46788899999999999999999999999999999998654
No 55
>KOG1864 consensus Ubiquitin-specific protease [Posttranslational modification, protein turnover, chaperones]
Probab=96.99 E-value=0.0014 Score=76.60 Aligned_cols=56 Identities=30% Similarity=0.573 Sum_probs=46.4
Q ss_pred ceEEEEEEEeeeccCCCccEEEEEEeeCCc-EEEEeCceeecccC-----CCCCceEEEEEE
Q 003583 750 GKYRLFGIVSHIGTSTQCGHYVAHILKDGR-WAIFNDNKVGASVD-----PPKEMGYLYFFE 805 (809)
Q Consensus 750 ~~Y~L~avI~H~G~s~~sGHYva~ikk~~~-W~~fND~kV~~~~~-----~~~~~~Yi~~Y~ 805 (809)
..|.|+|||+|.|.+.+.||||||+|..+. |++|||+.|..+.. .....+|+.+|.
T Consensus 509 ~~Y~L~avVvH~G~~p~~GHYia~~r~~~~nWl~fdD~~V~~~s~~~v~~~~~~s~~~~~~~ 570 (587)
T KOG1864|consen 509 RKYDLVAVVVHLGSTPNRGHYVAYVKSLDFNWLLFDDDNVEPISEEPVSEFTGSSGDTLFYY 570 (587)
T ss_pred ceeeEEEEEEeccCCCCCcceEEEEeeCCCCceecccccccccCcchhhhccCCCccceeee
Confidence 689999999999999999999999998776 99999999996532 344556666554
No 56
>KOG2561 consensus Adaptor protein NUB1, contains UBA domain [Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=96.56 E-value=0.0017 Score=70.85 Aligned_cols=106 Identities=25% Similarity=0.381 Sum_probs=82.2
Q ss_pred CCCcHHHHHHHHhcCCChHHHHHHHHHhCCccHHHHHHHhhhcCCCC------C------CCCC--CccccccccCChhh
Q 003583 620 PVANKDIVSQLVSMGFNHLHCEKAAVNTSNAGVEEAMNWLLSHMDDP------D------IDMP--LSQETQCAAIDQSK 685 (809)
Q Consensus 620 ~~~~~~~~~ql~~mgf~~~~~~~a~~~t~n~~~e~a~~wl~~h~dd~------d------~~~p--~~~~~~~~~~~~~~ 685 (809)
..++.+.++-|.+|||.+..++.|+..... +++.|+.+|-+.-+.- + +.+- +..+....-|++..
T Consensus 300 lki~d~~lsllv~mGfeesdaRlaLRsc~g-~Vd~AvqfI~erre~laq~R~k~~a~Ere~~~r~k~~n~~~~~wvn~rs 378 (568)
T KOG2561|consen 300 LKINDETLSLLVGMGFEESDARLALRSCNG-DVDSAVQFIIERREKLAQKREKDLAREREILERKKYGNTPMKKWVNPRS 378 (568)
T ss_pred eeccchHHHHHHHcCCCchHHHHHHHhccc-cHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCCcccccCHHH
Confidence 346777899999999999999999988765 8999999987542210 0 0000 01123345689999
Q ss_pred hhhhhcCCCCHHHHHHHHHHcCCChhhhccccccCCCCCCC
Q 003583 686 VETLLSFGFSEEVARNALKASGGDIEKATDWIFNNPDASTS 726 (809)
Q Consensus 686 ~~~l~~mgf~~~~a~~aL~~~~~~~~~a~dwlfs~~dd~~~ 726 (809)
+..|++|||....|..||+.++|++.+|+|-+-.+.|++..
T Consensus 379 ~~rL~~mGyer~la~eaL~r~~Ndi~~aldllq~esdel~~ 419 (568)
T KOG2561|consen 379 LERLVSMGYERELAAEALRRNENDIQKALDLLQDESDELES 419 (568)
T ss_pred HHHHHhcchHhHHHHHHHHhccCcHHHHHHhcCCcchhhhc
Confidence 99999999999999999999999999999988877776543
No 57
>KOG2689 consensus Predicted ubiquitin regulatory protein [Posttranslational modification, protein turnover, chaperones]
Probab=95.80 E-value=0.01 Score=61.30 Aligned_cols=45 Identities=42% Similarity=0.721 Sum_probs=41.0
Q ss_pred HHHHHhcCCChHHHHHHHHHhCCccHHHHHHHh-hhcCCCCCCCCCC
Q 003583 627 VSQLVSMGFNHLHCEKAAVNTSNAGVEEAMNWL-LSHMDDPDIDMPL 672 (809)
Q Consensus 627 ~~ql~~mgf~~~~~~~a~~~t~n~~~e~a~~wl-~~h~dd~d~~~p~ 672 (809)
+++|++||||..++.+|+.-|+|.+.+.||.|| ++|.+||. +.|.
T Consensus 4 ~~~l~~mgfps~k~e~al~~~~n~~~e~al~wl~~d~~~d~~-~ap~ 49 (290)
T KOG2689|consen 4 AQSLEEMGFPSGKAEKALAVYGNRGIEQALDWLEMDHAGDPI-DAPL 49 (290)
T ss_pred HHHHHHhcCchhhhhhHhhhhccccHHHHHHHHHhcccCCCc-cccc
Confidence 489999999999999999999999999999999 99999987 4554
No 58
>TIGR00601 rad23 UV excision repair protein Rad23. All proteins in this family for which functions are known are components of a multiprotein complex used for targeting nucleotide excision repair to specific parts of the genome. In humans, Rad23 complexes with the XPC protein. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=95.56 E-value=0.0067 Score=67.50 Aligned_cols=42 Identities=17% Similarity=0.426 Sum_probs=38.7
Q ss_pred CChhhhhhhhcCCCCHHHHHHHHHHcCCChhhhccccccCCC
Q 003583 681 IDQSKVETLLSFGFSEEVARNALKASGGDIEKATDWIFNNPD 722 (809)
Q Consensus 681 ~~~~~~~~l~~mgf~~~~a~~aL~~~~~~~~~a~dwlfs~~d 722 (809)
.-++.|..|++|||.++++.+||++.-||.+||||||.+..-
T Consensus 155 ~~e~~I~~i~eMGf~R~qV~~ALRAafNNPdRAVEYL~tGIP 196 (378)
T TIGR00601 155 ERETTIEEIMEMGYEREEVERALRAAFNNPDRAVEYLLTGIP 196 (378)
T ss_pred HHHHHHHHHHHhCCCHHHHHHHHHHHhCCHHHHHHHHHhCCC
Confidence 347789999999999999999999999999999999998854
No 59
>KOG0011 consensus Nucleotide excision repair factor NEF2, RAD23 component [Replication, recombination and repair]
Probab=95.08 E-value=0.061 Score=57.29 Aligned_cols=40 Identities=20% Similarity=0.338 Sum_probs=37.4
Q ss_pred hhhhhhhhcCCCCHHHHHHHHHHcCCChhhhccccccCCC
Q 003583 683 QSKVETLLSFGFSEEVARNALKASGGDIEKATDWIFNNPD 722 (809)
Q Consensus 683 ~~~~~~l~~mgf~~~~a~~aL~~~~~~~~~a~dwlfs~~d 722 (809)
.++|+.|.+|||.+..+..|--+++-|.+.|+.+||+|..
T Consensus 299 ~eAIeRL~alGF~ralViqayfACdKNEelAAN~Ll~~~f 338 (340)
T KOG0011|consen 299 KEAIERLEALGFPRALVIQAYFACDKNEELAANYLLSHSF 338 (340)
T ss_pred HHHHHHHHHhCCcHHHHHHHHHhcCccHHHHHHHHHhhcc
Confidence 4678899999999999999999999999999999999983
No 60
>PF02148 zf-UBP: Zn-finger in ubiquitin-hydrolases and other protein; InterPro: IPR001607 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule. Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. This entry represents UBP-type zinc finger domains, which display some similarity with the Zn-binding domain of the insulinase family. The UBP-type zinc finger domain is found only in a small subfamily of ubiquitin C-terminal hydrolases (deubiquitinases or UBP) [, ], All members of this subfamily are isopeptidase-T, which are known to cleave isopeptide bonds between ubiquitin moieties. Some of the proteins containing an UBP zinc finger include: Homo sapiens (Human) deubiquitinating enzyme 13 (UBPD) Human deubiquitinating enzyme 5 (UBP5) Dictyostelium discoideum (Slime mold) deubiquitinating enzyme A (UBPA) Saccharomyces cerevisiae (Baker's yeast) deubiquitinating enzyme 8 (UBP8) Yeast deubiquitinating enzyme 14 (UBP14) More information about these proteins can be found at Protein of the Month: Zinc Fingers [].; GO: 0008270 zinc ion binding; PDB: 3GV4_A 3PHD_B 3C5K_A 2UZG_A 3IHP_B 2G43_B 2G45_D 2I50_A 3MHH_A 3MHS_A ....
Probab=94.65 E-value=0.018 Score=47.13 Aligned_cols=34 Identities=21% Similarity=0.409 Sum_probs=26.0
Q ss_pred CCCcEEeccCcccc-Cc---chHhhhhhccCCcEEEEE
Q 003583 38 EGGLFVDLNSFLAY-GK---DHVGWNFEKTGNPVYLHI 71 (809)
Q Consensus 38 ~~gl~vcl~~f~~~-~~---~~~~~~~~~~~~~~~l~~ 71 (809)
...|+|||.|..-+ ++ .|+..|+++++|++++++
T Consensus 8 ~~~lw~CL~Cg~~~C~~~~~~Ha~~H~~~~~H~l~v~~ 45 (63)
T PF02148_consen 8 NSNLWLCLTCGYVGCGRYSNGHALKHYKETGHPLAVSL 45 (63)
T ss_dssp SSSEEEETTTS-EEETTTSTSHHHHHHHHHT--EEEET
T ss_pred CCceEEeCCCCcccccCCcCcHHHHhhcccCCeEEEEC
Confidence 36799999996664 43 699999999999999965
No 61
>PF05408 Peptidase_C28: Foot-and-mouth virus L-proteinase; InterPro: IPR008739 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Cysteine peptidases have characteristic molecular topologies, which can be seen not only in their three-dimensional structures, but commonly also in the two-dimensional structures. These are peptidases in which the nucleophile is the sulphydryl group of a cysteine residue. Cysteine proteases are divided into clans (proteins which are evolutionary related), and further sub-divided into families, on the basis of the architecture of their catalytic dyad or triad []. This group of cysteine peptidases belong to MEROPS peptidase family C28 (clan CA).The protein fold of the peptidase unit for members of this family resembles that of papain. The leader peptidase of Foot-and-mouth disease virus cleaves itself from the growing polyprotein and also cleaves the host translation initiation factor 4GI (eIF4G), thus inhibiting 5'-cap dependent translation [].; GO: 0004197 cysteine-type endopeptidase activity, 0016032 viral reproduction, 0019082 viral protein processing; PDB: 2JQF_R 1QMY_B 1QOL_G 2JQG_R.
Probab=88.18 E-value=0.47 Score=46.59 Aligned_cols=31 Identities=32% Similarity=0.486 Sum_probs=19.4
Q ss_pred cccccccCCChhhHHHHHHHHhc--hHHHHHHH
Q 003583 310 GYTGLVNLGNSCYLAATMQVMFS--THAFCTRY 340 (809)
Q Consensus 310 g~~GL~NLGNTCYmNSVLQ~L~~--ip~f~~~~ 340 (809)
.++|+.|.+|+|++||++|.+.. .|-|-.+|
T Consensus 32 eft~~PN~~dnCWlNaL~QL~~~~d~~~Fd~~Y 64 (193)
T PF05408_consen 32 EFTGLPNNHDNCWLNALLQLFRYVDEPFFDWYY 64 (193)
T ss_dssp EEE----SSSTHHHHHHHHHHHHHT-GTTHHHH
T ss_pred EEecCCCCCCChHHHHHHHHHHHcCcccchhhc
Confidence 46799999999999999998753 34444444
No 62
>PF09416 UPF1_Zn_bind: RNA helicase (UPF2 interacting domain); InterPro: IPR018999 UPF1 (or regulator of nonsense transcripts 1 homologue) is an essential RNA helicase that detects mRNAs containing premature stop codons and triggers their degradation. This domain contains 3 zinc binding motifs and forms interactions with another protein (UPF2) that is also involved nonsense-mediated mRNA decay (NMD) []. ; GO: 0003677 DNA binding, 0004386 helicase activity, 0005524 ATP binding, 0008270 zinc ion binding, 0000184 nuclear-transcribed mRNA catabolic process, nonsense-mediated decay, 0005737 cytoplasm; PDB: 2IYK_B 2WJY_A 2WJV_A 2XZL_A.
Probab=87.87 E-value=0.75 Score=44.21 Aligned_cols=64 Identities=19% Similarity=0.273 Sum_probs=35.4
Q ss_pred cccccCC--CCCeEEecccCcccccCCcCCCCCCCchHhhHhhhcCcc-EEEeeCccccCCCCcEEEeccCCC
Q 003583 183 KCAKCDK--RDNLWLNLTDGMILCGRRNWDGTGGNNHAVEHYKETGYP-LAVKLGTITSDLEGADVFSYPEDD 252 (809)
Q Consensus 183 ~C~~C~~--~~~lw~CL~Cg~~~Cgr~~~~g~~gn~ha~~H~~~~~H~-~~v~lgtit~~~~~~~v~cy~cd~ 252 (809)
.|.-|+. ...+-.|++|+.-+|--+ |.+..+|.+.|...++|. +.+.-.+ ..+.-.+.||.|+.
T Consensus 2 aC~YCG~~~p~~vv~C~~c~kWFCNg~---~~~s~SHIv~HLv~srh~ev~LH~~s---~lgdt~leCy~Cg~ 68 (152)
T PF09416_consen 2 ACAYCGIHDPSCVVKCNTCNKWFCNGR---GNTSGSHIVNHLVRSRHKEVSLHPDS---PLGDTVLECYNCGS 68 (152)
T ss_dssp S-TTT----CCCEEEETTTTEEEES-----TTSSS-HHHHHHHHHT---EEE-TTS---TT-S-B---TTT--
T ss_pred CccccCCCCcccEeEcCCCCcEeecCC---CCCcccHHHHHHHHccCCceeeCCCC---CCCCcEEEEEecCC
Confidence 4888884 578999999999999543 344678999999999875 3343210 11245799999974
No 63
>KOG0011 consensus Nucleotide excision repair factor NEF2, RAD23 component [Replication, recombination and repair]
Probab=87.65 E-value=0.33 Score=51.87 Aligned_cols=43 Identities=21% Similarity=0.410 Sum_probs=39.1
Q ss_pred CChhhhhhhhcCCCCHHHHHHHHHHcCCChhhhccccccCCCC
Q 003583 681 IDQSKVETLLSFGFSEEVARNALKASGGDIEKATDWIFNNPDA 723 (809)
Q Consensus 681 ~~~~~~~~l~~mgf~~~~a~~aL~~~~~~~~~a~dwlfs~~dd 723 (809)
..++.|..|++||..+++...||++.-||.+|||+||.+..-+
T Consensus 134 ~~e~~V~~Im~MGy~re~V~~AlRAafNNPeRAVEYLl~GIP~ 176 (340)
T KOG0011|consen 134 EYEQTVQQIMEMGYDREEVERALRAAFNNPERAVEYLLNGIPE 176 (340)
T ss_pred hhHHHHHHHHHhCccHHHHHHHHHHhhCChhhhHHHHhcCCcc
Confidence 4678899999999999999999999999999999999987544
No 64
>KOG1887 consensus Ubiquitin carboxyl-terminal hydrolase [Posttranslational modification, protein turnover, chaperones]
Probab=84.36 E-value=0.49 Score=56.30 Aligned_cols=38 Identities=24% Similarity=0.469 Sum_probs=30.2
Q ss_pred CceEEEEEEEeeeccCCCccEEEEEEeeCCcEE--EEeCceee
Q 003583 749 GGKYRLFGIVSHIGTSTQCGHYVAHILKDGRWA--IFNDNKVG 789 (809)
Q Consensus 749 ~~~Y~L~avI~H~G~s~~sGHYva~ikk~~~W~--~fND~kV~ 789 (809)
..+|+|+++|.-... .++|.|+....++|+ ..+|..+.
T Consensus 724 ~t~yrLVSmv~~~e~---~~~~~C~Aye~Nrwvs~r~~~~~~e 763 (806)
T KOG1887|consen 724 NTKYRLVSMVGNHEE---GEEYICFAYEPNRWVSLRHEDSQGE 763 (806)
T ss_pred CceeEEEEEeeeccc---cceEEEeeccCCcchhhHHHHHHhh
Confidence 467999999984322 579999999999999 88886554
No 65
>PF09288 UBA_3: Fungal ubiquitin-associated domain ; InterPro: IPR015368 This C-terminal domain is found in ubiquitin binding proteins, it adopts a structure consisting of a three alpha-helix bundle. This domain is predominantly found in fungi []. ; PDB: 1TTE_A.
Probab=77.35 E-value=2.7 Score=33.13 Aligned_cols=29 Identities=24% Similarity=0.324 Sum_probs=22.1
Q ss_pred CcHHHHHHHHhcCCChHHHHHHHHHhCCc
Q 003583 622 ANKDIVSQLVSMGFNHLHCEKAAVNTSNA 650 (809)
Q Consensus 622 ~~~~~~~ql~~mgf~~~~~~~a~~~t~n~ 650 (809)
+|.+++.++.+|||+..+...++..-|-.
T Consensus 8 i~~~lVd~F~~mGF~~dkVvevlrrlgik 36 (55)
T PF09288_consen 8 IDKDLVDQFENMGFERDKVVEVLRRLGIK 36 (55)
T ss_dssp -SHHHHHHHHHHT--HHHHHHHHHHS--S
T ss_pred CCHHHHHHHHHcCCcHHHHHHHHHHhCCC
Confidence 78999999999999999999998887743
No 66
>PRK14890 putative Zn-ribbon RNA-binding protein; Provisional
Probab=75.50 E-value=1.1 Score=35.80 Aligned_cols=22 Identities=27% Similarity=0.548 Sum_probs=20.5
Q ss_pred ccccccCCCCCeEEecccCccc
Q 003583 182 WKCAKCDKRDNLWLNLTDGMIL 203 (809)
Q Consensus 182 ~~C~~C~~~~~lw~CL~Cg~~~ 203 (809)
|+|..|....|.|.|-.||+.|
T Consensus 37 ~RC~~CRk~~~~Y~CP~CGF~G 58 (59)
T PRK14890 37 YRCEKCRKQSNPYTCPKCGFEG 58 (59)
T ss_pred eechhHHhcCCceECCCCCCcC
Confidence 7899999999999999999976
No 67
>COG2888 Predicted Zn-ribbon RNA-binding protein with a function in translation [Translation, ribosomal structure and biogenesis]
Probab=74.15 E-value=1.2 Score=35.48 Aligned_cols=22 Identities=32% Similarity=0.508 Sum_probs=20.6
Q ss_pred ccccccCCCCCeEEecccCccc
Q 003583 182 WKCAKCDKRDNLWLNLTDGMIL 203 (809)
Q Consensus 182 ~~C~~C~~~~~lw~CL~Cg~~~ 203 (809)
++|..|....|.|.|-.||+.|
T Consensus 39 ~Rc~~CRk~g~~Y~Cp~CGF~G 60 (61)
T COG2888 39 YRCAKCRKLGNPYRCPKCGFEG 60 (61)
T ss_pred ehhhhHHHcCCceECCCcCccC
Confidence 7899999999999999999986
No 68
>PF14555 UBA_4: UBA-like domain; PDB: 2DAL_A 3BQ3_A 2L4E_A 2L4F_A 2DZL_A 2L2D_A 2DAM_A 1V92_A 3E21_A.
Probab=69.27 E-value=3.7 Score=30.69 Aligned_cols=31 Identities=35% Similarity=0.472 Sum_probs=25.4
Q ss_pred CCCHHHHHHHHHHcCCChhhhccccccCCCC
Q 003583 693 GFSEEVARNALKASGGDIEKATDWIFNNPDA 723 (809)
Q Consensus 693 gf~~~~a~~aL~~~~~~~~~a~dwlfs~~dd 723 (809)
|.+++.|+.-|+..++|+++||+-.|.+.++
T Consensus 12 g~~~~~A~~~L~~~~wdle~Av~~y~~~~~~ 42 (43)
T PF14555_consen 12 GADEDVAIQYLEANNWDLEAAVNAYFDDGEA 42 (43)
T ss_dssp -SSHHHHHHHHHHTTT-HHHHHHHHHHSS-S
T ss_pred CcCHHHHHHHHHHcCCCHHHHHHHHHhCCCC
Confidence 6799999999999999999999988876553
No 69
>PF05408 Peptidase_C28: Foot-and-mouth virus L-proteinase; InterPro: IPR008739 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Cysteine peptidases have characteristic molecular topologies, which can be seen not only in their three-dimensional structures, but commonly also in the two-dimensional structures. These are peptidases in which the nucleophile is the sulphydryl group of a cysteine residue. Cysteine proteases are divided into clans (proteins which are evolutionary related), and further sub-divided into families, on the basis of the architecture of their catalytic dyad or triad []. This group of cysteine peptidases belong to MEROPS peptidase family C28 (clan CA).The protein fold of the peptidase unit for members of this family resembles that of papain. The leader peptidase of Foot-and-mouth disease virus cleaves itself from the growing polyprotein and also cleaves the host translation initiation factor 4GI (eIF4G), thus inhibiting 5'-cap dependent translation [].; GO: 0004197 cysteine-type endopeptidase activity, 0016032 viral reproduction, 0019082 viral protein processing; PDB: 2JQF_R 1QMY_B 1QOL_G 2JQG_R.
Probab=67.53 E-value=8.3 Score=38.13 Aligned_cols=28 Identities=14% Similarity=0.159 Sum_probs=23.0
Q ss_pred CccEEEEEEeeCCcEEEEeCceeecccC
Q 003583 766 QCGHYVAHILKDGRWAIFNDNKVGASVD 793 (809)
Q Consensus 766 ~sGHYva~ikk~~~W~~fND~kV~~~~~ 793 (809)
..||-|.+.+..+.||.|||+.+....-
T Consensus 137 g~~Havfa~~ts~gWy~iDDe~~y~~tP 164 (193)
T PF05408_consen 137 GQEHAVFACVTSDGWYAIDDEDFYPWTP 164 (193)
T ss_dssp STTEEEEEEEETTCEEEEETTEEEE---
T ss_pred CCcceEEEEEeeCcEEEecCCeeeeCCC
Confidence 3589999999999999999999987643
No 70
>KOG0418 consensus Ubiquitin-protein ligase [Posttranslational modification, protein turnover, chaperones]
Probab=66.31 E-value=4.1 Score=40.19 Aligned_cols=39 Identities=33% Similarity=0.468 Sum_probs=35.1
Q ss_pred CChhhhhhhhcCCCCHHHHHHHHHHcCCChhhhcccccc
Q 003583 681 IDQSKVETLLSFGFSEEVARNALKASGGDIEKATDWIFN 719 (809)
Q Consensus 681 ~~~~~~~~l~~mgf~~~~a~~aL~~~~~~~~~a~dwlfs 719 (809)
.+...++.|.+|||++..+..+|...+-++++|.+.++|
T Consensus 161 ~~~~~v~~l~~mGf~~~~~i~~L~~~~w~~~~a~~~~~s 199 (200)
T KOG0418|consen 161 WDKKKVDSLIEMGFSELEAILVLSGSDWNLADATEQLLS 199 (200)
T ss_pred hhHHHHHHHHHhcccHHHHHHHhhccccchhhhhHhhcc
Confidence 467889999999999999999999999999998887765
No 71
>PF02845 CUE: CUE domain; InterPro: IPR003892 This domain may be involved in binding ubiquitin-conjugating enzymes (UBCs). CUE domains also occur in two proteins of the IL-1 signal transduction pathway, tollip and TAB2.; GO: 0005515 protein binding; PDB: 2EKF_A 1OTR_A 1P3Q_Q 1MN3_A 1WGL_A 2EJS_A 2DAE_A 2DHY_A 2DI0_A.
Probab=65.22 E-value=4.9 Score=29.84 Aligned_cols=36 Identities=31% Similarity=0.442 Sum_probs=28.5
Q ss_pred hhhhhhhcCC--CCHHHHHHHHHHcCCChhhhcccccc
Q 003583 684 SKVETLLSFG--FSEEVARNALKASGGDIEKATDWIFN 719 (809)
Q Consensus 684 ~~~~~l~~mg--f~~~~a~~aL~~~~~~~~~a~dwlfs 719 (809)
+.+.+|.+|= ++.+..+.+|++++||+++|++-|++
T Consensus 3 ~~v~~L~~mFP~~~~~~I~~~L~~~~~~ve~ai~~LL~ 40 (42)
T PF02845_consen 3 EMVQQLQEMFPDLDREVIEAVLQANNGDVEAAIDALLE 40 (42)
T ss_dssp HHHHHHHHHSSSS-HHHHHHHHHHTTTTHHHHHHHHHH
T ss_pred HHHHHHHHHCCCCCHHHHHHHHHHcCCCHHHHHHHHHc
Confidence 4566666664 78899999999999999999987753
No 72
>PRK06369 nac nascent polypeptide-associated complex protein; Reviewed
Probab=64.66 E-value=5.4 Score=36.64 Aligned_cols=39 Identities=33% Similarity=0.433 Sum_probs=33.5
Q ss_pred cCChhhhhhhh-cCCCCHHHHHHHHHHcCCChhhhccccc
Q 003583 680 AIDQSKVETLL-SFGFSEEVARNALKASGGDIEKATDWIF 718 (809)
Q Consensus 680 ~~~~~~~~~l~-~mgf~~~~a~~aL~~~~~~~~~a~dwlf 718 (809)
.++++.|+.++ .-|.+++.|++||++++||+-.|+-+|-
T Consensus 74 ~i~~edI~lv~~q~gvs~~~A~~AL~~~~gDl~~AI~~L~ 113 (115)
T PRK06369 74 EIPEEDIELVAEQTGVSEEEARKALEEANGDLAEAILKLS 113 (115)
T ss_pred CCCHHHHHHHHHHHCcCHHHHHHHHHHcCCcHHHHHHHHh
Confidence 47888888865 4579999999999999999999988764
No 73
>PF09288 UBA_3: Fungal ubiquitin-associated domain ; InterPro: IPR015368 This C-terminal domain is found in ubiquitin binding proteins, it adopts a structure consisting of a three alpha-helix bundle. This domain is predominantly found in fungi []. ; PDB: 1TTE_A.
Probab=64.25 E-value=5 Score=31.70 Aligned_cols=27 Identities=26% Similarity=0.511 Sum_probs=21.4
Q ss_pred CChhhhhhhhcCCCCHHHHHHHHHHcC
Q 003583 681 IDQSKVETLLSFGFSEEVARNALKASG 707 (809)
Q Consensus 681 ~~~~~~~~l~~mgf~~~~a~~aL~~~~ 707 (809)
.+++.|+++.+|||+.+....+|+..+
T Consensus 8 i~~~lVd~F~~mGF~~dkVvevlrrlg 34 (55)
T PF09288_consen 8 IDKDLVDQFENMGFERDKVVEVLRRLG 34 (55)
T ss_dssp -SHHHHHHHHHHT--HHHHHHHHHHS-
T ss_pred CCHHHHHHHHHcCCcHHHHHHHHHHhC
Confidence 578999999999999999999998754
No 74
>KOG1802 consensus RNA helicase nonsense mRNA reducing factor (pNORF1) [RNA processing and modification]
Probab=62.16 E-value=8 Score=45.52 Aligned_cols=66 Identities=20% Similarity=0.218 Sum_probs=45.5
Q ss_pred ccccccCCCC--CeEEecccCcccccCCcCCCCCCCchHhhHhhhcCccEEEeeCccccCCCCcEEEeccCCC
Q 003583 182 WKCAKCDKRD--NLWLNLTDGMILCGRRNWDGTGGNNHAVEHYKETGYPLAVKLGTITSDLEGADVFSYPEDD 252 (809)
Q Consensus 182 ~~C~~C~~~~--~lw~CL~Cg~~~Cgr~~~~g~~gn~ha~~H~~~~~H~~~v~lgtit~~~~~~~v~cy~cd~ 252 (809)
..|.-|++.+ ++--|.+||.-+|--+ |..+.+|...|...+.|.-+---+ =+ ......+-||.|+.
T Consensus 61 ~~c~Ycgi~~p~~v~kc~~c~Kwfcn~r---~gtsgshIv~hlvra~hk~v~lh~-ds-~lget~lecyncg~ 128 (935)
T KOG1802|consen 61 HACAYCGISEPACVIKCNTCGKWFCNSR---GGTSGSHIVNHLVRAKHKEVSLHK-DS-PLGETVLECYNCGS 128 (935)
T ss_pred hhhhhccCCCchheeeccccCceeecCC---CCCchhHHHHHHHHhhhheeEecc-CC-CCCcceEEeeccCc
Confidence 5699999876 7888999999999443 222347999999998886543211 00 11234588999874
No 75
>cd02669 Peptidase_C19M A subfamily of Peptidase C19. Peptidase C19 contains ubiquitinyl hydrolases. They are intracellular peptidases that remove ubiquitin molecules from polyubiquinated peptides by cleavage of isopeptide bonds. They hydrolyze bonds involving the carboxyl group of the C-terminal Gly residue of ubiquitin. The purpose of the de-ubiquitination is thought to be editing of the ubiquitin conjugates, which could rescue them from degradation, as well as recycling of the ubiquitin. The ubiquitin/proteasome system is responsible for most protein turnover in the mammalian cell, and with over 50 members, family C19 is one of the largest families of peptidases in the human genome.
Probab=60.75 E-value=6.7 Score=45.14 Aligned_cols=35 Identities=17% Similarity=0.146 Sum_probs=28.8
Q ss_pred CCCCcEEeccCc---cccC-cchHhhhhhccCCcEEEEE
Q 003583 37 SEGGLFVDLNSF---LAYG-KDHVGWNFEKTGNPVYLHI 71 (809)
Q Consensus 37 ~~~gl~vcl~~f---~~~~-~~~~~~~~~~~~~~~~l~~ 71 (809)
+...+|.||.|. +|++ ..|+..|+..++|.++++.
T Consensus 24 ~~~n~~~CL~cg~~~~g~~~~~ha~~H~~~~~H~~~v~l 62 (440)
T cd02669 24 SNLNVYACLVCGKYFQGRGKGSHAYTHSLEDNHHVFLNL 62 (440)
T ss_pred CCCcEEEEcccCCeecCCCCCcHHHHHhhccCCCEEEEC
Confidence 445689999994 6653 4699999999999999976
No 76
>TIGR00264 alpha-NAC-related protein. This hypothetical protein is found so far only in the Archaea. Its C-terminal domain of about 40 amino acids is homologous to the C-termini of the nascent polypeptide-associated complex alpha chain (alpha-NAC) and its yeast ortholog Egd2p and to the huntingtin-interacting protein HYPK. It shows weaker similarity, possibly through shared structural constraints rather than through homology, with the amino-terminal domain of elongation factor Ts. Alpha-NAC plays a role in preventing nascent polypeptides from binding inappropriately to membrane-targeting apparatus during translation, but is also active as a transcription regulator.
Probab=60.24 E-value=6.7 Score=35.97 Aligned_cols=38 Identities=32% Similarity=0.499 Sum_probs=32.3
Q ss_pred cCChhhhhhhh-cCCCCHHHHHHHHHHcCCChhhhcccc
Q 003583 680 AIDQSKVETLL-SFGFSEEVARNALKASGGDIEKATDWI 717 (809)
Q Consensus 680 ~~~~~~~~~l~-~mgf~~~~a~~aL~~~~~~~~~a~dwl 717 (809)
.++++.|+.++ .-|.+++.|++||++++||+-.|+-+|
T Consensus 76 ~i~~eDI~lV~eq~gvs~e~A~~AL~~~~gDl~~AI~~L 114 (116)
T TIGR00264 76 EITEDDIELVMKQCNVSKEEARRALEECGGDLAEAIMKL 114 (116)
T ss_pred CCCHHHHHHHHHHhCcCHHHHHHHHHHcCCCHHHHHHHh
Confidence 36788888865 457999999999999999999998765
No 77
>smart00546 CUE Domain that may be involved in binding ubiquitin-conjugating enzymes (UBCs). CUE domains also occur in two protein of the IL-1 signal transduction pathway, tollip and TAB2. Ponting (Biochem. J.) "Proteins of the Endoplasmic reticulum" (in press)
Probab=56.95 E-value=12 Score=27.91 Aligned_cols=37 Identities=22% Similarity=0.405 Sum_probs=29.6
Q ss_pred hhhhhhhhcCC--CCHHHHHHHHHHcCCChhhhcccccc
Q 003583 683 QSKVETLLSFG--FSEEVARNALKASGGDIEKATDWIFN 719 (809)
Q Consensus 683 ~~~~~~l~~mg--f~~~~a~~aL~~~~~~~~~a~dwlfs 719 (809)
++.+..|.+|= ++..+++..|+..+||+++|++-|+.
T Consensus 3 ~~~v~~L~~mFP~l~~~~I~~~L~~~~g~ve~~i~~LL~ 41 (43)
T smart00546 3 DEALHDLKDMFPNLDEEVIKAVLEANNGNVEATINNLLE 41 (43)
T ss_pred HHHHHHHHHHCCCCCHHHHHHHHHHcCCCHHHHHHHHHc
Confidence 35566676773 67799999999999999999987754
No 78
>KOG2689 consensus Predicted ubiquitin regulatory protein [Posttranslational modification, protein turnover, chaperones]
Probab=53.11 E-value=9.1 Score=40.21 Aligned_cols=39 Identities=28% Similarity=0.531 Sum_probs=33.8
Q ss_pred hhhhcCCCCHHHHHHHHHHc-CCChhhhcccc-ccCCCCCC
Q 003583 687 ETLLSFGFSEEVARNALKAS-GGDIEKATDWI-FNNPDAST 725 (809)
Q Consensus 687 ~~l~~mgf~~~~a~~aL~~~-~~~~~~a~dwl-fs~~dd~~ 725 (809)
++|+.|||+...+-+||.-+ +.+++.|++|+ -+|.+|..
T Consensus 5 ~~l~~mgfps~k~e~al~~~~n~~~e~al~wl~~d~~~d~~ 45 (290)
T KOG2689|consen 5 QSLEEMGFPSGKAEKALAVYGNRGIEQALDWLEMDHAGDPI 45 (290)
T ss_pred HHHHHhcCchhhhhhHhhhhccccHHHHHHHHHhcccCCCc
Confidence 78999999999999999887 77899999999 66666554
No 79
>PF08715 Viral_protease: Papain like viral protease; InterPro: IPR014827 This family of viral proteases are similar to the papain protease and are required for proteolytic processing of the replicase polyprotein. The structure of this protein has shown it adopts a fold similar to that of de-ubiquitinating enzymes []. ; GO: 0004197 cysteine-type endopeptidase activity, 0008242 omega peptidase activity, 0016740 transferase activity; PDB: 3MP2_A 3EWP_B 3EWO_B 2FE8_A 3MJ5_B 3EKE_A 3EJF_A 3JZT_H 3ETI_E 3E9S_A.
Probab=51.42 E-value=31 Score=37.74 Aligned_cols=99 Identities=17% Similarity=0.186 Sum_probs=50.8
Q ss_pred CcccccccCCChhhHHHHHHHHhchHH-HHHHHhcCCchhhhhccCCCCCCccHHHHHHHHHHHHhcCCCCCChhhhhhh
Q 003583 309 PGYTGLVNLGNSCYLAATMQVMFSTHA-FCTRYYTQEPLKAAFEAAPADPTVDLNMQLTKLAHGLLSGKYSVPAQEKDAA 387 (809)
Q Consensus 309 ~g~~GL~NLGNTCYmNSVLQ~L~~ip~-f~~~~l~~~~~~~~~~~~~~~p~~~l~~ql~kL~~~l~sg~ys~~~~~~~~~ 387 (809)
.|++=|+=--|.||+||++=.|-++.. |+. ..+..+...+..|
T Consensus 100 ~g~~~Lkq~dNNCwVna~~~~LQ~~~~~f~~------------------------~~l~~aw~~f~~G------------ 143 (320)
T PF08715_consen 100 NGFRVLKQSDNNCWVNAACLQLQALKIKFKS------------------------PGLDEAWNEFKAG------------ 143 (320)
T ss_dssp TTEEEE---TTTHHHHHHHHHHTTST--BSS------------------------HHHHHHHHHHHTT------------
T ss_pred CCEEEEEecCCCcHHHHHHHHHHhcCCccCC------------------------HHHHHHHHHHhCC------------
Confidence 355566777899999999866644321 110 1344455555555
Q ss_pred hhccccCCCCCCCCChHHHHHHHHhhCCCCCCcccCCHHHHHHHHHHHHHHHhCCCCCCCCcCccceEEEEEEEe-cCCC
Q 003583 388 ANAATTTDTKQEGIPPRMFKAVIAASHPEFSSMRQQDALEFFLHFVDQVERVHSGKPEVDPTKSFKFGIEERISC-PSGK 466 (809)
Q Consensus 388 ~~~~~~~~~~~~~I~P~~f~~~i~~~~~~F~~~~QQDA~EFl~~LLd~L~~~~~~~~~~~i~~~F~g~l~~~i~C-~C~~ 466 (809)
+|..|.+.+-.. ..+.-++--||+++|..||+.++... .-.+...-.| .||.
T Consensus 144 --------------~~~~fVa~~Ya~-~~~~~G~~gDa~~~L~~ll~~~~~~~------------~~~~~~~~~~c~CG~ 196 (320)
T PF08715_consen 144 --------------DPAPFVAWCYAS-TNAKKGDPGDAEYVLSKLLKDADLDY------------SVTMTKLEVCCGCGV 196 (320)
T ss_dssp ----------------HHHHHHHHHH-TT--TTS---HHHHHHHHHTTB-TTT-------------EEEEEEEEECTTEE
T ss_pred --------------ChHHHHHHHHHH-cCCCCCCCcCHHHHHHHHHHhccccc------------eEEEEEeeeeccCCc
Confidence 356666655332 23445677799999999987665332 2344443445 9976
Q ss_pred Eeee
Q 003583 467 VAYN 470 (809)
Q Consensus 467 vs~~ 470 (809)
...+
T Consensus 197 k~~~ 200 (320)
T PF08715_consen 197 KQEE 200 (320)
T ss_dssp EEEE
T ss_pred ceee
Confidence 5443
No 80
>PF07499 RuvA_C: RuvA, C-terminal domain; InterPro: IPR011114 In prokaryotes, RuvA, RuvB, and RuvC process the universal DNA intermediate of homologous recombination, termed Holliday junction. The tetrameric DNA helicase RuvA specifically binds to the Holliday junction and facilitates the isomerization of the junction from the stacked folded configuration to the square-planar structure []. In the RuvA tetramer, each subunit consists of three domains, I, II and III, where I and II form the major core that is responsible for Holliday junction binding and base pair rearrangements of Holliday junction executed at the crossover point, whereas domain III regulates branch migration through direct contact with RuvB. The domain represents the C-terminal domain III of RuvA. This domain plays a significant role in the ATP-dependent branch migration of the hetero-duplex through direct contact with RuvB []. Within the Holliday junction, this domain makes no interaction with the DNA.; GO: 0005524 ATP binding, 0009378 four-way junction helicase activity, 0006281 DNA repair, 0006310 DNA recombination, 0009379 Holliday junction helicase complex; PDB: 1HJP_A 1CUK_A 1C7Y_A 1IXS_A 1IXR_B 1BVS_E 2ZTC_A 2ZTD_B 2H5X_A.
Probab=48.99 E-value=15 Score=27.98 Aligned_cols=24 Identities=29% Similarity=0.535 Sum_probs=20.7
Q ss_pred hhhhhhhhcCCCCHHHHHHHHHHc
Q 003583 683 QSKVETLLSFGFSEEVARNALKAS 706 (809)
Q Consensus 683 ~~~~~~l~~mgf~~~~a~~aL~~~ 706 (809)
++.++.|+++||++.++.+++...
T Consensus 4 ~d~~~AL~~LGy~~~e~~~av~~~ 27 (47)
T PF07499_consen 4 EDALEALISLGYSKAEAQKAVSKL 27 (47)
T ss_dssp HHHHHHHHHTTS-HHHHHHHHHHH
T ss_pred HHHHHHHHHcCCCHHHHHHHHHHh
Confidence 578899999999999999999776
No 81
>PRK12332 tsf elongation factor Ts; Reviewed
Probab=48.97 E-value=12 Score=38.18 Aligned_cols=29 Identities=31% Similarity=0.567 Sum_probs=25.3
Q ss_pred CCCCHHHHHHHHHHcCCChhhhccccccC
Q 003583 692 FGFSEEVARNALKASGGDIEKATDWIFNN 720 (809)
Q Consensus 692 mgf~~~~a~~aL~~~~~~~~~a~dwlfs~ 720 (809)
.|..--.+++||.+++||+++|++||-..
T Consensus 15 tga~~~~ck~AL~~~~gd~~~A~~~lr~~ 43 (198)
T PRK12332 15 TGAGMMDCKKALEEANGDMEKAIEWLREK 43 (198)
T ss_pred HCCCHHHHHHHHHHcCCCHHHHHHHHHHh
Confidence 36677899999999999999999999653
No 82
>KOG1873 consensus Ubiquitin-specific protease [Posttranslational modification, protein turnover, chaperones]
Probab=48.78 E-value=15 Score=43.74 Aligned_cols=147 Identities=30% Similarity=0.494 Sum_probs=122.4
Q ss_pred CccHHHHHhhhcCCcccCc---ccCCCCCC---------------------------ccceeEEeeccccCceeEEEEee
Q 003583 518 RVPLEACLSTFSAPEELPD---FYSTALKA---------------------------KTTATKSAGLTSFPDYLVLHMRK 567 (809)
Q Consensus 518 ~~sL~~cL~~f~~~E~le~---~~C~~C~~---------------------------~~~a~k~~~i~~lP~vLiI~LkR 567 (809)
.+|++.||..|+..|.+.| +.|+.|.+ .+.|.|+..|...|+||+|||||
T Consensus 677 p~Svq~CL~nFT~~E~Ls~~N~~~CEnCtk~~n~~~r~k~~~n~~~sk~s~~es~~~~t~akk~~li~~aPpVltihlKr 756 (877)
T KOG1873|consen 677 PCSVQRCLKNFTKVEILSGDNKWACENCTKNLNLQRREKRGLNEDNSKYSFNESEYRNTYAKKKVLINKAPPVLTIHLKR 756 (877)
T ss_pred CccHHHHHHhhhhhhhcccccchhhhhhhccccccchhhccCCCCcccccccchhhhhhhhheeeecccCCceeeehHhh
Confidence 5899999999999999986 88999954 12357888999999999999999
Q ss_pred EEEccCceeeeceeeecCCCccccccccCCCCCCCCCCCCCCCCCCcccCCCCCCcHHHHHHHHhcCCChHHHHHHHHHh
Q 003583 568 FVMEAGWVPKKLDVYIDVPDIIDISHMRSKGLQPGEELLPEGGPEDEVQSNKPVANKDIVSQLVSMGFNHLHCEKAAVNT 647 (809)
Q Consensus 568 F~~~~~~~~~Ki~~~V~fP~~LDL~~~~~~~~~~~e~~l~~~~~~~~~~~~~~~~~~~~~~ql~~mgf~~~~~~~a~~~t 647 (809)
|..+......|++.+|+|++.+||.+|+...-
T Consensus 757 f~q~~~~~~~k~~~h~~f~E~~dL~~~~~~rc------------------------------------------------ 788 (877)
T KOG1873|consen 757 FFQDIRGRLSKLNKHVDFKEFEDLLDYMDFRC------------------------------------------------ 788 (877)
T ss_pred hhhhhhchhhcccccchHHHHHHHHHHhhhhc------------------------------------------------
Confidence 99986666889999999999999998853211
Q ss_pred CCccHHHHHHHhhhcCCCCCCCCCCccccccccCChhhhhhhhcCCCCHHHHHHHHHHcCCChhhhccccccCCCCCCCc
Q 003583 648 SNAGVEEAMNWLLSHMDDPDIDMPLSQETQCAAIDQSKVETLLSFGFSEEVARNALKASGGDIEKATDWIFNNPDASTSS 727 (809)
Q Consensus 648 ~n~~~e~a~~wl~~h~dd~d~~~p~~~~~~~~~~~~~~~~~l~~mgf~~~~a~~aL~~~~~~~~~a~dwlfs~~dd~~~~ 727 (809)
.|.+.|
T Consensus 789 -------------~~l~~~------------------------------------------------------------- 794 (877)
T KOG1873|consen 789 -------------SHLDEP------------------------------------------------------------- 794 (877)
T ss_pred -------------cccCCc-------------------------------------------------------------
Confidence 110000
Q ss_pred ccccccCCCCCCCCCCCCCCCCceEEEEEEEeeeccCCCccEEEEEEee----------------------CCcEEEEeC
Q 003583 728 DMDAATSSTAQTPADAGLPDGGGKYRLFGIVSHIGTSTQCGHYVAHILK----------------------DGRWAIFND 785 (809)
Q Consensus 728 ~~~~~~~~~~~~~~~~~~~~~~~~Y~L~avI~H~G~s~~sGHYva~ikk----------------------~~~W~~fND 785 (809)
.+..|+|.|+|.|.|+ +..||||+|+|. .|+||...|
T Consensus 795 --------------------~s~~Yrl~gvvehsgt-m~~ghyvayv~~~t~~~~~~~~~~~~~~sd~~~~~~~Wy~iSD 853 (877)
T KOG1873|consen 795 --------------------SSFVYRLAGVVEHSGT-MSYGHYVAYVRGGTFLDLSAPSNSKDFESDAGIPSGRWYYISD 853 (877)
T ss_pred --------------------chhhhhhccceecccc-ccCCcchhhhhccchhhccCccccccchhccCCCCcceEEecc
Confidence 1457999999999999 999999999983 378999999
Q ss_pred ceeecc--cCCCCCceEEEEEEec
Q 003583 786 NKVGAS--VDPPKEMGYLYFFERL 807 (809)
Q Consensus 786 ~kV~~~--~~~~~~~~Yi~~Y~R~ 807 (809)
..|..+ +++.+..||||||+||
T Consensus 854 s~VrevS~d~vLkseAYlLFYERI 877 (877)
T KOG1873|consen 854 SIVREVSLDEVLKSEAYLLFYERI 877 (877)
T ss_pred hheecccHHHHhhhhhhhhheecC
Confidence 999977 5688999999999997
No 83
>KOG0804 consensus Cytoplasmic Zn-finger protein BRAP2 (BRCA1 associated protein) [General function prediction only]
Probab=47.96 E-value=12 Score=42.02 Aligned_cols=37 Identities=24% Similarity=0.345 Sum_probs=30.1
Q ss_pred CcEEeccCccc-cCc---chHhhhhhccCCcEEEEEEEEEe
Q 003583 40 GLFVDLNSFLA-YGK---DHVGWNFEKTGNPVYLHIKQTRK 76 (809)
Q Consensus 40 gl~vcl~~f~~-~~~---~~~~~~~~~~~~~~~l~~~~~~~ 76 (809)
-|-|||.|... |+| .|++.|++-|+|...|-+.-.+.
T Consensus 239 ~LwicliCg~vgcgrY~eghA~rHweet~H~yalel~tqrV 279 (493)
T KOG0804|consen 239 DLWICLICGNVGCGRYKEGHARRHWEETGHCYALELETQRV 279 (493)
T ss_pred cEEEEEEccceecccccchhHHHHHHhhcceEEEeecceee
Confidence 58999999665 654 79999999999998887765554
No 84
>PRK12332 tsf elongation factor Ts; Reviewed
Probab=47.05 E-value=32 Score=35.01 Aligned_cols=41 Identities=24% Similarity=0.479 Sum_probs=33.9
Q ss_pred CcHHHHHHHHhc-CCChHHHHHHHHHhCCccHHHHHHHhhhcC
Q 003583 622 ANKDIVSQLVSM-GFNHLHCEKAAVNTSNAGVEEAMNWLLSHM 663 (809)
Q Consensus 622 ~~~~~~~ql~~m-gf~~~~~~~a~~~t~n~~~e~a~~wl~~h~ 663 (809)
++...+.+|+++ |.+.-.|++||..+++ +.+.|++||-..-
T Consensus 3 i~a~~ik~LR~~tga~~~~ck~AL~~~~g-d~~~A~~~lr~~g 44 (198)
T PRK12332 3 ITAKLVKELREKTGAGMMDCKKALEEANG-DMEKAIEWLREKG 44 (198)
T ss_pred CCHHHHHHHHHHHCCCHHHHHHHHHHcCC-CHHHHHHHHHHhh
Confidence 455677777764 8899999999999985 8999999998753
No 85
>COG1308 EGD2 Transcription factor homologous to NACalpha-BTF3 [Transcription]
Probab=46.97 E-value=20 Score=33.16 Aligned_cols=38 Identities=29% Similarity=0.462 Sum_probs=31.6
Q ss_pred cCChhhhhhhh-cCCCCHHHHHHHHHHcCCChhhhcccc
Q 003583 680 AIDQSKVETLL-SFGFSEEVARNALKASGGDIEKATDWI 717 (809)
Q Consensus 680 ~~~~~~~~~l~-~mgf~~~~a~~aL~~~~~~~~~a~dwl 717 (809)
.++++.|..++ .-|.+++.|++||++++||+-.|+--|
T Consensus 82 ~i~eeDIkLV~eQa~VsreeA~kAL~e~~GDlaeAIm~L 120 (122)
T COG1308 82 DISEEDIKLVMEQAGVSREEAIKALEEAGGDLAEAIMKL 120 (122)
T ss_pred CCCHHHHHHHHHHhCCCHHHHHHHHHHcCCcHHHHHHHh
Confidence 47788888755 468999999999999999999887533
No 86
>TIGR00116 tsf translation elongation factor Ts. This protein is found in Bacteria, mitochondria, and chloroplasts.
Probab=46.17 E-value=13 Score=40.08 Aligned_cols=29 Identities=28% Similarity=0.310 Sum_probs=25.5
Q ss_pred CCCCHHHHHHHHHHcCCChhhhccccccC
Q 003583 692 FGFSEEVARNALKASGGDIEKATDWIFNN 720 (809)
Q Consensus 692 mgf~~~~a~~aL~~~~~~~~~a~dwlfs~ 720 (809)
.|..--.+++||.+++||+++|++||-..
T Consensus 15 Tgagm~dCKkAL~e~~gDiekAi~~LRkk 43 (290)
T TIGR00116 15 TGAGMMDCKKALTEANGDFEKAIKNLRES 43 (290)
T ss_pred HCCCHHHHHHHHHHcCCCHHHHHHHHHHh
Confidence 36677899999999999999999999654
No 87
>PRK09377 tsf elongation factor Ts; Provisional
Probab=44.52 E-value=14 Score=39.77 Aligned_cols=29 Identities=34% Similarity=0.567 Sum_probs=25.6
Q ss_pred CCCCHHHHHHHHHHcCCChhhhccccccC
Q 003583 692 FGFSEEVARNALKASGGDIEKATDWIFNN 720 (809)
Q Consensus 692 mgf~~~~a~~aL~~~~~~~~~a~dwlfs~ 720 (809)
.|..--.+++||.+++||+++|++||-..
T Consensus 16 Tgagm~dCKkAL~e~~gD~ekAi~~Lrk~ 44 (290)
T PRK09377 16 TGAGMMDCKKALTEADGDIEKAIEWLRKK 44 (290)
T ss_pred HCCCHHHHHHHHHHcCCCHHHHHHHHHHh
Confidence 36777899999999999999999999654
No 88
>TIGR00116 tsf translation elongation factor Ts. This protein is found in Bacteria, mitochondria, and chloroplasts.
Probab=44.18 E-value=33 Score=37.08 Aligned_cols=41 Identities=22% Similarity=0.332 Sum_probs=34.7
Q ss_pred CcHHHHHHHHhc-CCChHHHHHHHHHhCCccHHHHHHHhhhcC
Q 003583 622 ANKDIVSQLVSM-GFNHLHCEKAAVNTSNAGVEEAMNWLLSHM 663 (809)
Q Consensus 622 ~~~~~~~ql~~m-gf~~~~~~~a~~~t~n~~~e~a~~wl~~h~ 663 (809)
+....+.+|+++ |.+.-.||+||..+++ +.+.|++||-...
T Consensus 3 isa~~IK~LRe~Tgagm~dCKkAL~e~~g-DiekAi~~LRkkG 44 (290)
T TIGR00116 3 ITAQLVKELRERTGAGMMDCKKALTEANG-DFEKAIKNLRESG 44 (290)
T ss_pred CCHHHHHHHHHHHCCCHHHHHHHHHHcCC-CHHHHHHHHHHhc
Confidence 455677788764 8999999999999987 9999999999865
No 89
>PRK09377 tsf elongation factor Ts; Provisional
Probab=43.30 E-value=36 Score=36.76 Aligned_cols=41 Identities=24% Similarity=0.494 Sum_probs=34.6
Q ss_pred CcHHHHHHHHhc-CCChHHHHHHHHHhCCccHHHHHHHhhhcC
Q 003583 622 ANKDIVSQLVSM-GFNHLHCEKAAVNTSNAGVEEAMNWLLSHM 663 (809)
Q Consensus 622 ~~~~~~~ql~~m-gf~~~~~~~a~~~t~n~~~e~a~~wl~~h~ 663 (809)
+....+.+|+++ |.+.-.||+||..+++ +.+.|++||.+..
T Consensus 4 is~~~IK~LR~~Tgagm~dCKkAL~e~~g-D~ekAi~~Lrk~G 45 (290)
T PRK09377 4 ITAALVKELRERTGAGMMDCKKALTEADG-DIEKAIEWLRKKG 45 (290)
T ss_pred cCHHHHHHHHHHHCCCHHHHHHHHHHcCC-CHHHHHHHHHHhc
Confidence 456677888764 8999999999999885 8999999999864
No 90
>smart00546 CUE Domain that may be involved in binding ubiquitin-conjugating enzymes (UBCs). CUE domains also occur in two protein of the IL-1 signal transduction pathway, tollip and TAB2. Ponting (Biochem. J.) "Proteins of the Endoplasmic reticulum" (in press)
Probab=43.20 E-value=54 Score=24.28 Aligned_cols=38 Identities=34% Similarity=0.509 Sum_probs=26.3
Q ss_pred cHHHHHHHHhcCCChHH--HHHHHHHhCCccHHHHHHHhhh
Q 003583 623 NKDIVSQLVSMGFNHLH--CEKAAVNTSNAGVEEAMNWLLS 661 (809)
Q Consensus 623 ~~~~~~ql~~mgf~~~~--~~~a~~~t~n~~~e~a~~wl~~ 661 (809)
+++.+.+|.+| ||--. ..+..+...+.++|.|++-|++
T Consensus 2 ~~~~v~~L~~m-FP~l~~~~I~~~L~~~~g~ve~~i~~LL~ 41 (43)
T smart00546 2 NDEALHDLKDM-FPNLDEEVIKAVLEANNGNVEATINNLLE 41 (43)
T ss_pred hHHHHHHHHHH-CCCCCHHHHHHHHHHcCCCHHHHHHHHHc
Confidence 35678899999 88633 3334444456689999998874
No 91
>CHL00098 tsf elongation factor Ts
Probab=42.03 E-value=17 Score=36.99 Aligned_cols=28 Identities=29% Similarity=0.381 Sum_probs=24.6
Q ss_pred CCCHHHHHHHHHHcCCChhhhccccccC
Q 003583 693 GFSEEVARNALKASGGDIEKATDWIFNN 720 (809)
Q Consensus 693 gf~~~~a~~aL~~~~~~~~~a~dwlfs~ 720 (809)
|..--.+++||.+++||++.|++||-.+
T Consensus 13 gag~~dck~AL~e~~gd~~~A~~~Lr~~ 40 (200)
T CHL00098 13 GAGMMDCKKALQEANGDFEKALESLRQK 40 (200)
T ss_pred CCCHHHHHHHHHHcCCCHHHHHHHHHHh
Confidence 5666789999999999999999999654
No 92
>KOG0010 consensus Ubiquitin-like protein [Posttranslational modification, protein turnover, chaperones; General function prediction only]
Probab=41.23 E-value=19 Score=41.05 Aligned_cols=37 Identities=38% Similarity=0.650 Sum_probs=31.6
Q ss_pred hhhhhhhhcCCCC-HHHHHHHHHHcCCChhhhcccccc
Q 003583 683 QSKVETLLSFGFS-EEVARNALKASGGDIEKATDWIFN 719 (809)
Q Consensus 683 ~~~~~~l~~mgf~-~~~a~~aL~~~~~~~~~a~dwlfs 719 (809)
...+++|-+|||. ++....||+++.||+.+||+.++.
T Consensus 455 q~QLeQL~~MGF~nre~nlqAL~atgGdi~aAverll~ 492 (493)
T KOG0010|consen 455 QTQLEQLNDMGFLDREANLQALRATGGDINAAVERLLG 492 (493)
T ss_pred HHHHHHHHhcCCccHHHHHHHHHHhcCcHHHHHHHHhc
Confidence 4568899999965 577899999999999999997753
No 93
>CHL00098 tsf elongation factor Ts
Probab=38.83 E-value=46 Score=33.94 Aligned_cols=37 Identities=24% Similarity=0.433 Sum_probs=30.4
Q ss_pred HHHHHHHh-cCCChHHHHHHHHHhCCccHHHHHHHhhhc
Q 003583 625 DIVSQLVS-MGFNHLHCEKAAVNTSNAGVEEAMNWLLSH 662 (809)
Q Consensus 625 ~~~~ql~~-mgf~~~~~~~a~~~t~n~~~e~a~~wl~~h 662 (809)
+.+.+|+. -|-+.-.|++||..+++ +.+.|++||-..
T Consensus 3 ~~ik~LR~~Tgag~~dck~AL~e~~g-d~~~A~~~Lr~~ 40 (200)
T CHL00098 3 ELVKELRDKTGAGMMDCKKALQEANG-DFEKALESLRQK 40 (200)
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHcCC-CHHHHHHHHHHh
Confidence 34556655 47888999999999987 999999999875
No 94
>COG3478 Predicted nucleic-acid-binding protein containing a Zn-ribbon domain [General function prediction only]
Probab=37.75 E-value=33 Score=27.96 Aligned_cols=35 Identities=14% Similarity=0.190 Sum_probs=28.1
Q ss_pred ccCCCCCCccceeEEeecc--ccCceeEEEEeeEEEc
Q 003583 537 FYSTALKAKTTATKSAGLT--SFPDYLVLHMRKFVME 571 (809)
Q Consensus 537 ~~C~~C~~~~~a~k~~~i~--~lP~vLiI~LkRF~~~ 571 (809)
+.|++||...-..|..... .|.+++=||.+||...
T Consensus 5 ~kCpKCgn~~~~ekei~~tg~~lskifdvq~n~f~~i 41 (68)
T COG3478 5 FKCPKCGNTNYEEKEIAATGGGLSKIFDVQNNKFIVI 41 (68)
T ss_pred ccCCCcCCcchhhceeeccCCCcceeEEecccEEEEE
Confidence 4699999887766666654 6889999999999875
No 95
>cd00729 rubredoxin_SM Rubredoxin, Small Modular nonheme iron binding domain containing a [Fe(SCys)4] center, present in rubrerythrin and nigerythrin and detected either N- or C-terminal to such proteins as flavin reductase, NAD(P)H-nitrite reductase, and ferredoxin-thioredoxin reductase. In rubredoxin, the iron atom is coordinated by four cysteine residues (Fe(S-Cys)4), and believed to be involved in electron transfer. Rubrerythrins and nigerythrins are small homodimeric proteins, generally consisting of 2 domains: a rubredoxin domain C-terminal to a non-sulfur, oxo-bridged diiron site in the N-terminal rubrerythrin domain. Rubrerythrins and nigerythrins have putative peroxide activity.
Probab=35.89 E-value=26 Score=24.82 Aligned_cols=13 Identities=31% Similarity=0.580 Sum_probs=7.6
Q ss_pred eEEecccCccccc
Q 003583 193 LWLNLTDGMILCG 205 (809)
Q Consensus 193 lw~CL~Cg~~~Cg 205 (809)
.|+|..||++.=|
T Consensus 2 ~~~C~~CG~i~~g 14 (34)
T cd00729 2 VWVCPVCGYIHEG 14 (34)
T ss_pred eEECCCCCCEeEC
Confidence 4666666666443
No 96
>PF01473 CW_binding_1: Putative cell wall binding repeat; InterPro: IPR018337 The cell wall-binding repeat (CW) is an about 20 amino acid residue module, essentially found in two bacterial Gram-positive protein families; the choline binding proteins and glucosyltransferases (2.4.1.5 from EC). In choline-binding proteins cell wall binding repeats bind to choline moieties of both teichoic and lipoteichoic acids, two components peculiar to the cell surface of Gram-positive bacteria [, ]. In glucosyltransferases the region spanning the CW repeats is a glucan binding domain []. Several crystal structures of CW have been solved [, ]. In the choline binding protein LytA, the repeats adopt a solenoid fold consisting exclusively of beta-hairpins that stack to form a left-handed superhelix with a boomerang-like shape. The choline groups bind between beta-hairpin 'steps' of the superhelix []. In Cpl-1 CW repeats assemble in two sub-domains: an N-terminal superhelical moiety similar to the LytA one and a C-terminal beta-sheet involved in interactions with the lysozyme domain. Choline is bound between repeats 1 and 2, and, 2 and 3 of the superhelical sub-domain []. Some proteins known to contain cell-wall binding repeats include: Pneumococcal N-acetylmuramoyl-L-alanine amidase (autolysin, lytA) (3.5.1.28 from EC). It is a surface-exposed enzyme that rules the self-destruction of pneumococcal cells through degradation of their peptidoglycan backbone. It mediates the release of toxic substances that damage the host tissues. Pneumococcal endo-beta-N-acetylglucosaminidase (lytB) (3.2.1.96 from EC). It plays an important role in cell wall degradation and cell separation. Pneumococcal teichoic acid phosphorylcholine esterase (pce or cbpE), a cell wall hydrolase important for cellular adhesion and colonisation. Lactobacillales glucosyltransferase. It catalyses the transfer of glucosyl units from the cleavage of sucrose to a growing chain of glucan. Clostridium difficile toxin A (tcdA) and toxin B (tcdb). They are the causative agents of the antibiotic-associated pseudomembranous colitis. They are intracellular acting toxins that reach their targets after receptor-mediated endocytosis. Clostridium acetobutylicum cspA protein. Siphoviridae bacteriophages N-acetylmuramoyl-L-alanine amidase. It lyses the bacterial host cell wall. Podoviridae lysozyme protein (cpl-1). It is capable of digesting the pneumococcal cell wall. The cell wall binding repeats are also known as the choline-binding repeats (ChBr) or the choline-binding domain (ChBD). ; PDB: 1GVM_C 2BML_B 1HCX_A 1OBA_A 1H09_A 2J8F_A 2IXU_A 2J8G_A 2IXV_A 2X8O_A ....
Probab=35.17 E-value=37 Score=20.48 Aligned_cols=14 Identities=21% Similarity=0.798 Sum_probs=11.3
Q ss_pred EEeeCCcEEEEeCc
Q 003583 773 HILKDGRWAIFNDN 786 (809)
Q Consensus 773 ~ikk~~~W~~fND~ 786 (809)
+++.++.||.|++.
T Consensus 3 W~~~~~~wYy~~~~ 16 (19)
T PF01473_consen 3 WVQDNGNWYYFDSD 16 (19)
T ss_dssp EEEETTEEEEETTT
T ss_pred CEEECCEEEEeCCC
Confidence 56778999999864
No 97
>COG0264 Tsf Translation elongation factor Ts [Translation, ribosomal structure and biogenesis]
Probab=34.33 E-value=26 Score=37.51 Aligned_cols=26 Identities=35% Similarity=0.585 Sum_probs=22.5
Q ss_pred CCHHHHHHHHHHcCCChhhhcccccc
Q 003583 694 FSEEVARNALKASGGDIEKATDWIFN 719 (809)
Q Consensus 694 f~~~~a~~aL~~~~~~~~~a~dwlfs 719 (809)
-.--.+++||.+++||++.|+|||-.
T Consensus 18 AGMmdCKkAL~E~~Gd~EkAie~LR~ 43 (296)
T COG0264 18 AGMMDCKKALEEANGDIEKAIEWLRE 43 (296)
T ss_pred CcHHHHHHHHHHcCCCHHHHHHHHHH
Confidence 34467999999999999999999954
No 98
>PF07499 RuvA_C: RuvA, C-terminal domain; InterPro: IPR011114 In prokaryotes, RuvA, RuvB, and RuvC process the universal DNA intermediate of homologous recombination, termed Holliday junction. The tetrameric DNA helicase RuvA specifically binds to the Holliday junction and facilitates the isomerization of the junction from the stacked folded configuration to the square-planar structure []. In the RuvA tetramer, each subunit consists of three domains, I, II and III, where I and II form the major core that is responsible for Holliday junction binding and base pair rearrangements of Holliday junction executed at the crossover point, whereas domain III regulates branch migration through direct contact with RuvB. The domain represents the C-terminal domain III of RuvA. This domain plays a significant role in the ATP-dependent branch migration of the hetero-duplex through direct contact with RuvB []. Within the Holliday junction, this domain makes no interaction with the DNA.; GO: 0005524 ATP binding, 0009378 four-way junction helicase activity, 0006281 DNA repair, 0006310 DNA recombination, 0009379 Holliday junction helicase complex; PDB: 1HJP_A 1CUK_A 1C7Y_A 1IXS_A 1IXR_B 1BVS_E 2ZTC_A 2ZTD_B 2H5X_A.
Probab=34.09 E-value=1.2e+02 Score=23.09 Aligned_cols=24 Identities=25% Similarity=0.526 Sum_probs=20.5
Q ss_pred HHHHHHHHhcCCChHHHHHHHHHh
Q 003583 624 KDIVSQLVSMGFNHLHCEKAAVNT 647 (809)
Q Consensus 624 ~~~~~ql~~mgf~~~~~~~a~~~t 647 (809)
+++++.|.+.||++..+.+|+...
T Consensus 4 ~d~~~AL~~LGy~~~e~~~av~~~ 27 (47)
T PF07499_consen 4 EDALEALISLGYSKAEAQKAVSKL 27 (47)
T ss_dssp HHHHHHHHHTTS-HHHHHHHHHHH
T ss_pred HHHHHHHHHcCCCHHHHHHHHHHh
Confidence 578999999999999999988766
No 99
>PF02099 Josephin: Josephin; InterPro: IPR006155 Human genes containing triplet repeats can markedly expand in length, leading to neuropsychiatric disease. Expansion of triplet repeats explains the phenomenon of anticipation, i.e. the increasing severity or earlier age of onset in successive generations in a pedigree []. A novel gene containing CAG repeats has been identified and mapped to chromosome 14q32.1, the genetic locus for Machado-Joseph disease (MJD). Normally, the gene contains 13-36 CAG repeats, but most clinically diagnosed patients and all affected members of a family with the clinical and pathological diagnosis of MJD show expansion of the repeat number, from 68-79 []. Similar abnormalities in related genes may give rise to diseases similar to MJD. MJD is a neurodegenerative disorder characterised by cerebellar ataxia, pyramidal and extra-pyramidal signs, peripheral nerve palsy, external ophtalmoplegia, facial and lingual fasciculation and bulging. The disease is autosomal dominant, with late onset of symptoms, generally after the fourth decade.; GO: 0008242 omega peptidase activity; PDB: 3O65_G 1YZB_A 2JRI_A 2DOS_A 2AGA_A.
Probab=32.10 E-value=62 Score=31.66 Aligned_cols=30 Identities=20% Similarity=0.491 Sum_probs=24.3
Q ss_pred EEEEEEeeeccCCCccEEEEEEeeCCcEEEEeCce
Q 003583 753 RLFGIVSHIGTSTQCGHYVAHILKDGRWAIFNDNK 787 (809)
Q Consensus 753 ~L~avI~H~G~s~~sGHYva~ikk~~~W~~fND~k 787 (809)
...||||+.+. |++|.-|-+|.||-+|=..
T Consensus 98 ~~~gfI~N~~~-----HWf~iRki~~~wyNLDS~l 127 (157)
T PF02099_consen 98 NEFGFICNLSR-----HWFAIRKIGGQWYNLDSKL 127 (157)
T ss_dssp CSSEEEEECTT-----EEEEEEEETTEEEEECTTT
T ss_pred hceEEEeccCc-----ceEEEEeeCCeeEeccCCC
Confidence 35699999544 9999888899999998654
No 100
>PF11547 E3_UbLigase_EDD: E3 ubiquitin ligase EDD; InterPro: IPR024725 EDD, the ER ubiquitin ligase from the HECT ligases, contains an N-terminal ubiquitin-associated (UBA) domain which binds ubiquitin. Ubiquitin is recognised by helices alpha-1 and -3 in in the UBA domain. EDD is involved in DNA damage repair pathways and binds to mono-ubiquitinated proteins [].; GO: 0043130 ubiquitin binding; PDB: 2QHO_H.
Probab=31.56 E-value=33 Score=26.17 Aligned_cols=45 Identities=16% Similarity=0.251 Sum_probs=33.2
Q ss_pred ccCChhhhhh--hhcCCCCHHHHHHHHHHcCCChhhhccccccCCCC
Q 003583 679 AAIDQSKVET--LLSFGFSEEVARNALKASGGDIEKATDWIFNNPDA 723 (809)
Q Consensus 679 ~~~~~~~~~~--l~~mgf~~~~a~~aL~~~~~~~~~a~dwlfs~~dd 723 (809)
+.++++.|.+ .+--|-+++..++.|+.++-|+..|+.-|.|..|+
T Consensus 6 ~~vPedlI~q~q~VLqgksR~vIirELqrTnLdVN~AvNNlLsRDde 52 (53)
T PF11547_consen 6 SQVPEDLINQAQVVLQGKSRNVIIRELQRTNLDVNLAVNNLLSRDDE 52 (53)
T ss_dssp GGS-HHHHHHHHHHSTTS-HHHHHHHHHHTTT-HHHHHHHHHHHH--
T ss_pred ccCCHHHHHHHHHHHcCCcHHHHHHHHHHhcccHHHHHHHHhccccC
Confidence 3466777766 45578999999999999999999999988887654
No 101
>PF14555 UBA_4: UBA-like domain; PDB: 2DAL_A 3BQ3_A 2L4E_A 2L4F_A 2DZL_A 2L2D_A 2DAM_A 1V92_A 3E21_A.
Probab=29.63 E-value=1.4e+02 Score=22.16 Aligned_cols=33 Identities=15% Similarity=0.112 Sum_probs=22.1
Q ss_pred cCCChHHHHHHHHHhCCccHHHHHHHhhhcCCCC
Q 003583 633 MGFNHLHCEKAAVNTSNAGVEEAMNWLLSHMDDP 666 (809)
Q Consensus 633 mgf~~~~~~~a~~~t~n~~~e~a~~wl~~h~dd~ 666 (809)
.|.++..|++-|...+. +++.|++-.|+..++|
T Consensus 11 Tg~~~~~A~~~L~~~~w-dle~Av~~y~~~~~~~ 43 (43)
T PF14555_consen 11 TGADEDVAIQYLEANNW-DLEAAVNAYFDDGEAP 43 (43)
T ss_dssp H-SSHHHHHHHHHHTTT--HHHHHHHHHHSS-S-
T ss_pred HCcCHHHHHHHHHHcCC-CHHHHHHHHHhCCCCC
Confidence 36777777777766654 8999999998876554
No 102
>KOG3556 consensus Familial cylindromatosis protein [General function prediction only]
Probab=27.69 E-value=96 Score=35.68 Aligned_cols=26 Identities=31% Similarity=0.492 Sum_probs=20.8
Q ss_pred cccccccCCChhhHHHHHHHHhchHH
Q 003583 310 GYTGLVNLGNSCYLAATMQVMFSTHA 335 (809)
Q Consensus 310 g~~GL~NLGNTCYmNSVLQ~L~~ip~ 335 (809)
...|+.-.-|+||+||.|-++|.-..
T Consensus 367 k~kgiqgh~nscyldstlf~~f~f~s 392 (724)
T KOG3556|consen 367 KIKGIQGHPNSCYLDSTLFKPFEFDS 392 (724)
T ss_pred ccccccCCcchhhccccccccccccc
Confidence 45688888899999999988876443
No 103
>PF14353 CpXC: CpXC protein
Probab=27.13 E-value=82 Score=29.43 Aligned_cols=11 Identities=18% Similarity=0.117 Sum_probs=9.1
Q ss_pred ccCCCCCCccc
Q 003583 537 FYSTALKAKTT 547 (809)
Q Consensus 537 ~~C~~C~~~~~ 547 (809)
+.||.||....
T Consensus 39 ~~CP~Cg~~~~ 49 (128)
T PF14353_consen 39 FTCPSCGHKFR 49 (128)
T ss_pred EECCCCCCcee
Confidence 89999997653
No 104
>cd00350 rubredoxin_like Rubredoxin_like; nonheme iron binding domain containing a [Fe(SCys)4] center. The family includes rubredoxins, a small electron transfer protein, and a slightly smaller modular rubredoxin domain present in rubrerythrin and nigerythrin and detected either N- or C-terminal to such proteins as flavin reductase, NAD(P)H-nitrite reductase, and ferredoxin-thioredoxin reductase. In rubredoxin, the iron atom is coordinated by four cysteine residues (Fe(S-Cys)4), but iron can also be replaced by cobalt, nickel or zinc and believed to be involved in electron transfer. Rubrerythrins and nigerythrins are small homodimeric proteins, generally consisting of 2 domains: a rubredoxin domain C-terminal to a non-sulfur, oxo-bridged diiron site in the N-terminal rubrerythrin domain. Rubrerythrins and nigerythrins have putative peroxide activity.
Probab=26.81 E-value=25 Score=24.64 Aligned_cols=20 Identities=20% Similarity=0.572 Sum_probs=9.5
Q ss_pred ccccccCCC----CCeEEecccCc
Q 003583 182 WKCAKCDKR----DNLWLNLTDGM 201 (809)
Q Consensus 182 ~~C~~C~~~----~~lw~CL~Cg~ 201 (809)
|.|..|+.. ...|.|..||.
T Consensus 2 ~~C~~CGy~y~~~~~~~~CP~Cg~ 25 (33)
T cd00350 2 YVCPVCGYIYDGEEAPWVCPVCGA 25 (33)
T ss_pred EECCCCCCEECCCcCCCcCcCCCC
Confidence 345555532 23555555554
No 105
>PF09855 DUF2082: Nucleic-acid-binding protein containing Zn-ribbon domain (DUF2082); InterPro: IPR018652 This family of proteins contains various hypothetical prokaryotic proteins as well as some Zn-ribbon nucleic-acid-binding proteins.
Probab=25.61 E-value=62 Score=26.63 Aligned_cols=35 Identities=6% Similarity=0.092 Sum_probs=23.2
Q ss_pred ccCCCCCCccceeEEeec--cccCceeEEEEeeEEEc
Q 003583 537 FYSTALKAKTTATKSAGL--TSFPDYLVLHMRKFVME 571 (809)
Q Consensus 537 ~~C~~C~~~~~a~k~~~i--~~lP~vLiI~LkRF~~~ 571 (809)
|.|++||...--.++.+. ..+-.++=||.+||...
T Consensus 1 y~C~KCg~~~~e~~~v~~tgg~~skiFdvq~~~f~~v 37 (64)
T PF09855_consen 1 YKCPKCGNEEYESGEVRATGGGLSKIFDVQNKKFTTV 37 (64)
T ss_pred CCCCCCCCcceecceEEccCCeeEEEEEecCcEEEEE
Confidence 689999986544444433 23556677888888764
No 106
>COG4008 Predicted metal-binding transcription factor [Transcription]
Probab=25.01 E-value=66 Score=29.80 Aligned_cols=38 Identities=29% Similarity=0.296 Sum_probs=33.1
Q ss_pred cCChhhhhhhhcCCCCHHHHHHHHHHcCCChhhhccccc
Q 003583 680 AIDQSKVETLLSFGFSEEVARNALKASGGDIEKATDWIF 718 (809)
Q Consensus 680 ~~~~~~~~~l~~mgf~~~~a~~aL~~~~~~~~~a~dwlf 718 (809)
.++.+.++.+..-+.+++.|++||...+ |+.+|+..+.
T Consensus 112 ~~~~e~v~v~a~a~v~~eeAr~aleeag-Dl~~A~k~l~ 149 (153)
T COG4008 112 EPPVEEVEVLADAFVTPEEAREALEEAG-DLRTAMKILR 149 (153)
T ss_pred CCcHHHHHHHHHhcCCHHHHHHHHHHcC-CHHHHHHHHH
Confidence 4678889999999999999999999988 9999987553
No 107
>PF08274 PhnA_Zn_Ribbon: PhnA Zinc-Ribbon ; InterPro: IPR013987 The PhnA protein family includes the uncharacterised Escherichia coli protein PhnA and its homologues. The E. coli phnA gene is part of a large operon associated with alkylphosphonate uptake and carbon-phosphorus bond cleavage []. The protein is not related to the characterised phosphonoacetate hydrolase designated PhnA []. This entry represents the N-terminal domain of PhnA, which is predicted to form a zinc-ribbon.; PDB: 2AKL_A.
Probab=24.69 E-value=44 Score=23.14 Aligned_cols=20 Identities=25% Similarity=0.428 Sum_probs=12.1
Q ss_pred cccccCC-----CCCeEEecccCcc
Q 003583 183 KCAKCDK-----RDNLWLNLTDGMI 202 (809)
Q Consensus 183 ~C~~C~~-----~~~lw~CL~Cg~~ 202 (809)
+|..|+. ...+++|-+||+.
T Consensus 4 ~Cp~C~se~~y~D~~~~vCp~C~~e 28 (30)
T PF08274_consen 4 KCPLCGSEYTYEDGELLVCPECGHE 28 (30)
T ss_dssp --TTT-----EE-SSSEEETTTTEE
T ss_pred CCCCCCCcceeccCCEEeCCccccc
Confidence 5777776 3668999999873
No 108
>COG5574 PEX10 RING-finger-containing E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=24.47 E-value=34 Score=35.94 Aligned_cols=27 Identities=22% Similarity=0.498 Sum_probs=23.7
Q ss_pred CCCCccccccCCCCCeEEecccCcccc
Q 003583 178 PPSGWKCAKCDKRDNLWLNLTDGMILC 204 (809)
Q Consensus 178 ~~~~~~C~~C~~~~~lw~CL~Cg~~~C 204 (809)
+..+-+|..|....+.-.|..|||++|
T Consensus 212 p~~d~kC~lC~e~~~~ps~t~CgHlFC 238 (271)
T COG5574 212 PLADYKCFLCLEEPEVPSCTPCGHLFC 238 (271)
T ss_pred cccccceeeeecccCCcccccccchhh
Confidence 334578999999999999999999999
No 109
>PRK09750 hypothetical protein; Provisional
Probab=24.23 E-value=84 Score=25.17 Aligned_cols=30 Identities=17% Similarity=0.442 Sum_probs=23.9
Q ss_pred ceEEEEEEEeeeccCCCccEEEEEEeeCCcEEEEeCceeecc
Q 003583 750 GKYRLFGIVSHIGTSTQCGHYVAHILKDGRWAIFNDNKVGAS 791 (809)
Q Consensus 750 ~~Y~L~avI~H~G~s~~sGHYva~ikk~~~W~~fND~kV~~~ 791 (809)
++|++.|.|---|.+.. .|+.|.|.+.+..
T Consensus 2 ykY~I~Ati~KpGg~P~------------~W~r~s~~~mtk~ 31 (64)
T PRK09750 2 YMYKITATIEKEGGTPT------------NWTRYSKSKLTKS 31 (64)
T ss_pred ceeEEEEEEECCCCCcc------------ceeEecCCcCCHH
Confidence 57999999988877532 4999999998854
No 110
>PRK07143 hypothetical protein; Provisional
Probab=24.06 E-value=1.6e+02 Score=31.81 Aligned_cols=55 Identities=16% Similarity=0.162 Sum_probs=41.7
Q ss_pred CCCHHHHHHHHHHcCCChhhhccccccCCCCCCCcccccccCCCCCCCCCCCCCCCCceEEEEEEEeeeccC--------
Q 003583 693 GFSEEVARNALKASGGDIEKATDWIFNNPDASTSSDMDAATSSTAQTPADAGLPDGGGKYRLFGIVSHIGTS-------- 764 (809)
Q Consensus 693 gf~~~~a~~aL~~~~~~~~~a~dwlfs~~dd~~~~~~~~~~~~~~~~~~~~~~~~~~~~Y~L~avI~H~G~s-------- 764 (809)
.+|....|++| .+|+++.|...| ...|.+.|.|.|- .+
T Consensus 149 ~ISST~IR~~l--~~G~i~~A~~lL-------------------------------Gr~y~i~G~V~~G-aNl~~~~~~~ 194 (279)
T PRK07143 149 KISTSLLKEFI--EFGDIELLNSLL-------------------------------LYNYSISITINKN-FEFTYPQNII 194 (279)
T ss_pred EEcHHHHHHHH--HcCCHHHHHHHc-------------------------------CCCcEEEEEEECC-eEeCCCcCcC
Confidence 35667778877 578888887755 4679999999982 11
Q ss_pred -CCccEEEEEEeeCCcEE
Q 003583 765 -TQCGHYVAHILKDGRWA 781 (809)
Q Consensus 765 -~~sGHYva~ikk~~~W~ 781 (809)
...|=|.+.++-+|+||
T Consensus 195 ~P~~GVYa~~v~~~~~~y 212 (279)
T PRK07143 195 KLHAGIYLAYVVINNFKY 212 (279)
T ss_pred CCCCcEEEEEEEECCEEE
Confidence 35799999998888876
No 111
>PF07754 DUF1610: Domain of unknown function (DUF1610); InterPro: IPR011668 This domain is found in archaeal species. It is likely to bind zinc via its four well-conserved cysteine residues.
Probab=23.97 E-value=49 Score=21.65 Aligned_cols=12 Identities=8% Similarity=-0.014 Sum_probs=8.2
Q ss_pred CCCeEEecccCc
Q 003583 190 RDNLWLNLTDGM 201 (809)
Q Consensus 190 ~~~lw~CL~Cg~ 201 (809)
....+.|..||.
T Consensus 13 ~~v~f~CPnCG~ 24 (24)
T PF07754_consen 13 QAVPFPCPNCGF 24 (24)
T ss_pred cCceEeCCCCCC
Confidence 456777877774
No 112
>KOG0418 consensus Ubiquitin-protein ligase [Posttranslational modification, protein turnover, chaperones]
Probab=22.26 E-value=98 Score=30.89 Aligned_cols=38 Identities=26% Similarity=0.357 Sum_probs=27.9
Q ss_pred CcHHHHHHHHhcCCChHHHHHHHHHhCCccHHHHHHHhh
Q 003583 622 ANKDIVSQLVSMGFNHLHCEKAAVNTSNAGVEEAMNWLL 660 (809)
Q Consensus 622 ~~~~~~~ql~~mgf~~~~~~~a~~~t~n~~~e~a~~wl~ 660 (809)
.+...+..|.+|||.++.+..+|...+= +.+.|.+.++
T Consensus 161 ~~~~~v~~l~~mGf~~~~~i~~L~~~~w-~~~~a~~~~~ 198 (200)
T KOG0418|consen 161 WDKKKVDSLIEMGFSELEAILVLSGSDW-NLADATEQLL 198 (200)
T ss_pred hhHHHHHHHHHhcccHHHHHHHhhcccc-chhhhhHhhc
Confidence 4677899999999999998888765443 4455555544
No 113
>COG0777 AccD Acetyl-CoA carboxylase beta subunit [Lipid metabolism]
Probab=20.93 E-value=34 Score=36.23 Aligned_cols=21 Identities=29% Similarity=0.435 Sum_probs=17.6
Q ss_pred ccccccCC-------CCCeEEecccCcc
Q 003583 182 WKCAKCDK-------RDNLWLNLTDGMI 202 (809)
Q Consensus 182 ~~C~~C~~-------~~~lw~CL~Cg~~ 202 (809)
.+|..|+. ..|+|+|+.||+-
T Consensus 29 ~KCp~c~~~~y~~eL~~n~~vcp~c~~h 56 (294)
T COG0777 29 TKCPSCGEMLYRKELESNLKVCPKCGHH 56 (294)
T ss_pred eECCCccceeeHHHHHhhhhcccccCcc
Confidence 47999975 5899999999985
No 114
>PRK10220 hypothetical protein; Provisional
Probab=20.45 E-value=59 Score=29.50 Aligned_cols=20 Identities=15% Similarity=0.509 Sum_probs=15.7
Q ss_pred cccccCC-----CCCeEEecccCcc
Q 003583 183 KCAKCDK-----RDNLWLNLTDGMI 202 (809)
Q Consensus 183 ~C~~C~~-----~~~lw~CL~Cg~~ 202 (809)
.|..|.. ..++|+|..||+-
T Consensus 5 ~CP~C~seytY~d~~~~vCpeC~hE 29 (111)
T PRK10220 5 HCPKCNSEYTYEDNGMYICPECAHE 29 (111)
T ss_pred cCCCCCCcceEcCCCeEECCcccCc
Confidence 4777765 3689999999986
No 115
>COG1997 RPL43A Ribosomal protein L37AE/L43A [Translation, ribosomal structure and biogenesis]
Probab=20.07 E-value=69 Score=27.92 Aligned_cols=17 Identities=18% Similarity=0.384 Sum_probs=13.7
Q ss_pred CCeEEecccCcccccCC
Q 003583 191 DNLWLNLTDGMILCGRR 207 (809)
Q Consensus 191 ~~lw~CL~Cg~~~Cgr~ 207 (809)
.-+|.|-.||+.+-|-.
T Consensus 51 ~GIW~C~kCg~~fAGga 67 (89)
T COG1997 51 TGIWKCRKCGAKFAGGA 67 (89)
T ss_pred cCeEEcCCCCCeecccc
Confidence 56899999999987644
Done!