BLASTP 2.2.26 [Sep-21-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.


Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 003584
         (809 letters)

Database: pdbaa 
           62,578 sequences; 14,973,337 total letters

Searching..................................................done



>pdb|3KD7|A Chain A, Designed Tpr Module (Ctpr390) In Complex With Its
           Peptide-Ligand (Hsp90 Peptide)
 pdb|3KD7|B Chain B, Designed Tpr Module (Ctpr390) In Complex With Its
           Peptide-Ligand (Hsp90 Peptide)
 pdb|3KD7|C Chain C, Designed Tpr Module (Ctpr390) In Complex With Its
           Peptide-Ligand (Hsp90 Peptide)
 pdb|3KD7|D Chain D, Designed Tpr Module (Ctpr390) In Complex With Its
           Peptide-Ligand (Hsp90 Peptide)
 pdb|3KD7|E Chain E, Designed Tpr Module (Ctpr390) In Complex With Its
           Peptide-Ligand (Hsp90 Peptide)
          Length = 125

 Score = 30.8 bits (68), Expect = 3.4,   Method: Composition-based stats.
 Identities = 17/54 (31%), Positives = 23/54 (42%)

Query: 606 ATVWKALLSACRVHGDLELGERAANNLFELEPMNAMPYVQLSNMYSTAGKWEDA 659
           A  WK L +A    GD +          EL+P NA  +  L N Y   G ++ A
Sbjct: 9   AEAWKNLGNAYYKQGDYQKAIEYYQKALELDPNNASAWYNLGNAYYKQGDYQKA 62


>pdb|2QHT|A Chain A, Structural Basis Of Octanoic Acid Recognition By
           Lipoate-Protein Ligase B
 pdb|2QHU|A Chain A, Structural Basis Of Octanoic Acid Recognition By
           Lipoate-Protein Ligase B
 pdb|2QHV|A Chain A, Structural Basis Of Octanoic Acid Recognition By
           Lipoate-protein Ligase B
          Length = 210

 Score = 30.4 bits (67), Expect = 3.6,   Method: Composition-based stats.
 Identities = 12/31 (38%), Positives = 19/31 (61%)

Query: 141 RLCSLKGLLQRGEQFHGYAIKTCFDLNAFVV 171
           +LC++   ++ G  FHG+A+    DLN F V
Sbjct: 136 KLCAIGVAVKEGVSFHGFALNVNTDLNDFTV 166


>pdb|2QHS|A Chain A, Structural Basis Of Octanoic Acid Recognition By
           Lipoate-protein Ligase B
          Length = 237

 Score = 30.4 bits (67), Expect = 3.6,   Method: Composition-based stats.
 Identities = 12/31 (38%), Positives = 19/31 (61%)

Query: 141 RLCSLKGLLQRGEQFHGYAIKTCFDLNAFVV 171
           +LC++   ++ G  FHG+A+    DLN F V
Sbjct: 156 KLCAIGVAVKEGVSFHGFALNVNTDLNDFTV 186


  Database: pdbaa
    Posted date:  Mar 3, 2013 10:34 PM
  Number of letters in database: 14,973,337
  Number of sequences in database:  62,578
  
Lambda     K      H
   0.323    0.138    0.428 

Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 24,550,831
Number of Sequences: 62578
Number of extensions: 1036264
Number of successful extensions: 2385
Number of sequences better than 100.0: 4
Number of HSP's better than 100.0 without gapping: 3
Number of HSP's successfully gapped in prelim test: 1
Number of HSP's that attempted gapping in prelim test: 2381
Number of HSP's gapped (non-prelim): 11
length of query: 809
length of database: 14,973,337
effective HSP length: 107
effective length of query: 702
effective length of database: 8,277,491
effective search space: 5810798682
effective search space used: 5810798682
T: 11
A: 40
X1: 16 ( 7.5 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (22.0 bits)
S2: 55 (25.8 bits)