Query 003584
Match_columns 809
No_of_seqs 902 out of 5031
Neff 10.4
Searched_HMMs 46136
Date Fri Mar 29 02:12:12 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/003584.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/003584hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PLN03077 Protein ECB2; Provisi 100.0 3E-150 7E-155 1328.7 86.2 783 21-807 70-857 (857)
2 PLN03081 pentatricopeptide (PP 100.0 3E-127 7E-132 1105.5 71.9 612 198-809 85-697 (697)
3 PLN03077 Protein ECB2; Provisi 100.0 4.6E-85 9.9E-90 773.3 65.4 608 94-724 47-659 (857)
4 PLN03081 pentatricopeptide (PP 100.0 3.2E-70 6.8E-75 631.4 52.4 474 95-572 84-561 (697)
5 PLN03218 maturation of RBCL 1; 100.0 2.9E-69 6.2E-74 623.8 55.2 526 58-602 359-908 (1060)
6 PLN03218 maturation of RBCL 1; 100.0 8E-66 1.7E-70 595.2 58.3 504 165-676 367-916 (1060)
7 TIGR02917 PEP_TPR_lipo putativ 100.0 6.3E-35 1.4E-39 353.9 64.9 638 18-667 209-898 (899)
8 TIGR02917 PEP_TPR_lipo putativ 100.0 2E-34 4.3E-39 349.6 64.7 644 15-671 172-868 (899)
9 PF14432 DYW_deaminase: DYW fa 100.0 2.6E-36 5.6E-41 255.4 8.7 106 676-799 2-116 (116)
10 PRK11447 cellulose synthase su 100.0 1.1E-24 2.4E-29 264.5 65.1 618 36-671 28-743 (1157)
11 PRK11447 cellulose synthase su 100.0 4.3E-24 9.4E-29 259.4 57.0 585 73-670 34-701 (1157)
12 PRK09782 bacteriophage N4 rece 99.9 2.8E-21 6.1E-26 223.8 55.9 619 21-671 63-742 (987)
13 PRK09782 bacteriophage N4 rece 99.9 1.6E-20 3.5E-25 217.5 59.0 563 80-670 57-707 (987)
14 KOG4626 O-linked N-acetylgluco 99.9 4.7E-20 1E-24 188.6 35.1 450 203-665 51-515 (966)
15 KOG4626 O-linked N-acetylgluco 99.9 2E-19 4.4E-24 184.0 28.2 418 241-670 54-486 (966)
16 KOG2002 TPR-containing nuclear 99.8 1.1E-16 2.3E-21 173.4 45.3 618 33-670 38-746 (1018)
17 TIGR00990 3a0801s09 mitochondr 99.8 6.1E-17 1.3E-21 185.1 40.2 418 203-669 130-571 (615)
18 PRK11788 tetratricopeptide rep 99.8 5.9E-18 1.3E-22 183.7 29.3 288 382-676 46-354 (389)
19 PRK11788 tetratricopeptide rep 99.8 6.4E-18 1.4E-22 183.4 28.0 303 203-539 38-354 (389)
20 PRK15174 Vi polysaccharide exp 99.8 3.5E-16 7.6E-21 178.1 38.8 368 281-669 16-403 (656)
21 KOG2002 TPR-containing nuclear 99.8 4.3E-15 9.4E-20 161.1 44.6 576 83-672 146-801 (1018)
22 PRK10049 pgaA outer membrane p 99.8 8.5E-16 1.9E-20 178.8 42.7 391 247-668 27-455 (765)
23 PRK10049 pgaA outer membrane p 99.8 2E-15 4.4E-20 175.7 42.3 371 268-670 13-423 (765)
24 TIGR00990 3a0801s09 mitochondr 99.8 4.5E-15 9.8E-20 169.8 42.9 441 171-667 130-595 (615)
25 PRK15174 Vi polysaccharide exp 99.7 3.2E-15 7E-20 170.2 36.2 326 336-671 42-383 (656)
26 PRK14574 hmsH outer membrane p 99.7 6.3E-14 1.4E-18 159.8 42.6 423 209-668 43-512 (822)
27 PRK14574 hmsH outer membrane p 99.7 1.1E-13 2.4E-18 157.7 44.3 439 176-642 42-520 (822)
28 KOG4422 Uncharacterized conser 99.7 3.2E-13 7E-18 133.3 39.4 444 99-601 117-588 (625)
29 KOG0495 HAT repeat protein [RN 99.7 2.7E-11 5.9E-16 126.1 51.4 495 141-685 384-894 (913)
30 KOG2076 RNA polymerase III tra 99.7 2.8E-11 6E-16 131.2 49.3 610 47-665 150-891 (895)
31 KOG0495 HAT repeat protein [RN 99.7 2.5E-10 5.4E-15 119.1 52.7 447 214-680 390-855 (913)
32 KOG4422 Uncharacterized conser 99.6 2.3E-12 5E-17 127.4 33.5 298 38-370 118-467 (625)
33 KOG2076 RNA polymerase III tra 99.6 5.5E-11 1.2E-15 129.0 46.0 585 77-670 150-850 (895)
34 KOG4318 Bicoid mRNA stability 99.6 6.7E-12 1.5E-16 134.9 36.5 533 119-679 11-603 (1088)
35 KOG2003 TPR repeat-containing 99.6 1.6E-12 3.4E-17 129.2 28.8 204 450-657 503-711 (840)
36 KOG4318 Bicoid mRNA stability 99.6 6.2E-11 1.3E-15 127.7 41.7 616 33-671 22-810 (1088)
37 PF13429 TPR_15: Tetratricopep 99.5 8.6E-14 1.9E-18 142.9 10.8 213 450-667 57-275 (280)
38 KOG0547 Translocase of outer m 99.5 1.4E-10 3.1E-15 117.1 32.5 212 450-667 339-564 (606)
39 PRK10747 putative protoheme IX 99.4 1.5E-10 3.2E-15 124.5 29.3 254 347-636 129-391 (398)
40 KOG1126 DNA-binding cell divis 99.4 3E-11 6.4E-16 127.2 20.9 276 386-670 334-621 (638)
41 KOG1915 Cell cycle control pro 99.4 1.6E-08 3.5E-13 102.0 39.0 482 180-667 85-623 (677)
42 PRK10747 putative protoheme IX 99.4 3.3E-10 7.1E-15 121.9 28.7 275 384-668 97-389 (398)
43 KOG1155 Anaphase-promoting com 99.4 5E-09 1.1E-13 105.5 33.9 311 346-668 174-494 (559)
44 TIGR00540 hemY_coli hemY prote 99.4 4.8E-10 1E-14 121.3 29.4 290 313-634 96-398 (409)
45 KOG2003 TPR repeat-containing 99.4 3.2E-10 6.8E-15 113.0 25.1 436 207-669 208-689 (840)
46 KOG1126 DNA-binding cell divis 99.4 8.3E-11 1.8E-15 123.8 22.1 244 417-669 334-586 (638)
47 KOG1173 Anaphase-promoting com 99.3 9.5E-10 2.1E-14 113.5 28.1 196 469-668 309-517 (611)
48 PF13429 TPR_15: Tetratricopep 99.3 6.8E-12 1.5E-16 128.8 12.6 190 373-565 80-275 (280)
49 TIGR00540 hemY_coli hemY prote 99.3 2.5E-09 5.5E-14 115.7 31.8 217 446-667 162-397 (409)
50 KOG1155 Anaphase-promoting com 99.3 1.6E-08 3.4E-13 102.0 34.1 284 309-599 235-532 (559)
51 KOG1915 Cell cycle control pro 99.3 5.3E-08 1.2E-12 98.3 35.9 423 68-499 74-534 (677)
52 TIGR02521 type_IV_pilW type IV 99.3 3.5E-10 7.7E-15 112.9 20.8 198 471-669 30-232 (234)
53 KOG2047 mRNA splicing factor [ 99.2 4.5E-06 9.8E-11 88.0 48.4 308 67-397 102-451 (835)
54 KOG0985 Vesicle coat protein c 99.2 1.8E-07 4E-12 102.4 39.0 159 486-667 1089-1247(1666)
55 PF13041 PPR_2: PPR repeat fam 99.2 1.8E-11 3.9E-16 87.8 5.3 50 198-247 1-50 (50)
56 COG2956 Predicted N-acetylgluc 99.2 2.6E-08 5.6E-13 96.0 27.5 296 314-677 48-355 (389)
57 KOG0547 Translocase of outer m 99.2 6.2E-08 1.3E-12 98.5 30.8 217 413-636 337-567 (606)
58 PF13041 PPR_2: PPR repeat fam 99.2 3.4E-11 7.5E-16 86.3 5.6 50 501-550 1-50 (50)
59 KOG3785 Uncharacterized conser 99.2 1.8E-07 4E-12 91.1 32.6 169 488-669 339-514 (557)
60 KOG1840 Kinesin light chain [C 99.2 2.9E-09 6.3E-14 113.7 22.6 230 438-667 200-477 (508)
61 COG3071 HemY Uncharacterized e 99.2 3.5E-08 7.5E-13 98.3 27.8 278 314-633 97-388 (400)
62 KOG4162 Predicted calmodulin-b 99.2 2.2E-07 4.8E-12 99.9 34.8 442 163-679 318-792 (799)
63 COG3071 HemY Uncharacterized e 99.1 7E-08 1.5E-12 96.2 28.1 285 213-531 97-389 (400)
64 KOG2376 Signal recognition par 99.1 5.8E-07 1.3E-11 93.8 34.9 432 207-663 19-514 (652)
65 KOG3616 Selective LIM binding 99.1 2.2E-07 4.7E-12 98.4 31.7 492 79-665 456-962 (1636)
66 PRK12370 invasion protein regu 99.1 1.2E-08 2.6E-13 114.8 24.0 243 418-670 277-536 (553)
67 COG2956 Predicted N-acetylgluc 99.1 5E-08 1.1E-12 94.1 24.1 217 213-431 48-278 (389)
68 PRK11189 lipoprotein NlpI; Pro 99.1 7.8E-09 1.7E-13 106.3 20.1 212 452-670 41-266 (296)
69 KOG1174 Anaphase-promoting com 99.1 4.7E-07 1E-11 90.2 30.5 302 334-641 192-506 (564)
70 KOG2047 mRNA splicing factor [ 99.1 1.6E-05 3.6E-10 83.9 43.2 431 45-499 111-613 (835)
71 KOG0985 Vesicle coat protein c 99.1 1E-05 2.3E-10 89.2 43.2 438 70-526 609-1217(1666)
72 KOG1129 TPR repeat-containing 99.0 1.6E-08 3.6E-13 97.2 17.5 227 407-670 228-459 (478)
73 TIGR02521 type_IV_pilW type IV 99.0 5.5E-08 1.2E-12 96.9 22.4 197 402-636 31-233 (234)
74 KOG1173 Anaphase-promoting com 99.0 7.8E-07 1.7E-11 92.5 30.4 276 308-617 251-533 (611)
75 COG3063 PilF Tfp pilus assembl 99.0 2.1E-08 4.5E-13 92.5 16.1 160 507-671 39-204 (250)
76 KOG3616 Selective LIM binding 99.0 1.1E-05 2.5E-10 85.8 38.3 106 309-425 740-847 (1636)
77 KOG1840 Kinesin light chain [C 99.0 1.6E-07 3.4E-12 100.7 24.6 232 375-634 203-478 (508)
78 PRK12370 invasion protein regu 99.0 4E-08 8.6E-13 110.6 21.3 210 452-669 276-502 (553)
79 KOG3617 WD40 and TPR repeat-co 99.0 4.4E-05 9.6E-10 82.7 42.2 374 242-670 919-1360(1416)
80 KOG1174 Anaphase-promoting com 98.9 1.2E-05 2.6E-10 80.4 32.8 261 167-429 96-395 (564)
81 PRK11189 lipoprotein NlpI; Pro 98.9 3.4E-07 7.5E-12 94.2 23.5 187 446-640 73-270 (296)
82 KOG2376 Signal recognition par 98.8 0.00012 2.5E-09 77.2 38.8 50 581-631 465-516 (652)
83 KOG4162 Predicted calmodulin-b 98.8 0.00011 2.3E-09 79.9 39.5 206 364-569 316-544 (799)
84 KOG1156 N-terminal acetyltrans 98.8 3.3E-05 7.3E-10 82.0 35.0 95 577-671 374-470 (700)
85 KOG1156 N-terminal acetyltrans 98.8 8.5E-05 1.8E-09 79.0 37.9 123 540-666 373-508 (700)
86 KOG1127 TPR repeat-containing 98.8 1.5E-05 3.3E-10 88.2 33.6 183 42-227 465-657 (1238)
87 KOG3785 Uncharacterized conser 98.8 4.5E-06 9.7E-11 81.6 26.1 189 478-671 291-492 (557)
88 PF12569 NARP1: NMDA receptor- 98.8 3.1E-05 6.7E-10 84.4 34.7 45 621-665 472-516 (517)
89 KOG1129 TPR repeat-containing 98.8 2.9E-07 6.2E-12 88.8 16.1 223 375-602 227-457 (478)
90 COG3063 PilF Tfp pilus assembl 98.7 4.5E-06 9.7E-11 77.4 20.8 168 471-641 68-242 (250)
91 KOG1127 TPR repeat-containing 98.7 3.8E-05 8.2E-10 85.2 31.1 563 83-668 474-1103(1238)
92 PF04733 Coatomer_E: Coatomer 98.7 1E-06 2.2E-11 89.3 18.1 153 480-639 110-269 (290)
93 KOG3617 WD40 and TPR repeat-co 98.7 0.00016 3.4E-09 78.6 34.5 31 608-638 1332-1362(1416)
94 PRK04841 transcriptional regul 98.6 0.0013 2.9E-08 79.9 47.2 362 277-669 348-760 (903)
95 KOG1125 TPR repeat-containing 98.6 4.8E-07 1E-11 94.4 14.6 216 451-669 299-527 (579)
96 PF12569 NARP1: NMDA receptor- 98.6 1.6E-05 3.5E-10 86.6 26.9 280 381-667 14-332 (517)
97 cd05804 StaR_like StaR_like; a 98.6 3.8E-05 8.2E-10 82.1 29.3 292 374-670 9-337 (355)
98 KOG0548 Molecular co-chaperone 98.6 1.9E-05 4.2E-10 82.1 24.9 215 442-670 229-456 (539)
99 PF04733 Coatomer_E: Coatomer 98.6 9.6E-07 2.1E-11 89.4 14.9 149 512-669 111-265 (290)
100 KOG0624 dsRNA-activated protei 98.5 6.7E-05 1.5E-09 73.4 24.7 208 306-539 43-257 (504)
101 KOG4340 Uncharacterized conser 98.5 8.1E-05 1.8E-09 71.4 24.6 408 238-668 13-442 (459)
102 KOG0548 Molecular co-chaperone 98.5 0.0001 2.2E-09 76.9 27.0 239 376-652 229-472 (539)
103 PRK15359 type III secretion sy 98.5 2.7E-06 5.8E-11 76.9 13.2 121 524-651 14-137 (144)
104 PF12854 PPR_1: PPR repeat 98.5 1.4E-07 3E-12 60.5 3.5 33 62-94 2-34 (34)
105 PRK04841 transcriptional regul 98.5 0.0017 3.7E-08 79.0 41.1 87 480-566 661-759 (903)
106 cd05804 StaR_like StaR_like; a 98.5 0.00037 8E-09 74.5 31.5 192 202-430 8-214 (355)
107 TIGR03302 OM_YfiO outer membra 98.5 8.7E-06 1.9E-10 81.2 17.5 179 471-669 32-232 (235)
108 PF12854 PPR_1: PPR repeat 98.4 3.2E-07 7E-12 58.8 4.1 33 265-297 2-34 (34)
109 PRK10370 formate-dependent nit 98.4 1.1E-05 2.3E-10 77.2 16.2 118 551-670 52-174 (198)
110 KOG4340 Uncharacterized conser 98.4 0.00013 2.8E-09 70.1 22.5 305 340-665 14-335 (459)
111 KOG1128 Uncharacterized conser 98.4 8.9E-06 1.9E-10 87.4 16.1 221 366-636 393-617 (777)
112 KOG1070 rRNA processing protei 98.4 2.2E-05 4.7E-10 90.0 19.1 198 469-671 1455-1665(1710)
113 PRK15359 type III secretion sy 98.4 5.9E-06 1.3E-10 74.7 12.3 99 570-670 22-122 (144)
114 PLN02789 farnesyltranstransfer 98.3 0.00011 2.3E-09 75.7 22.1 171 479-653 78-268 (320)
115 PRK15363 pathogenicity island 98.3 7.9E-06 1.7E-10 72.3 11.7 119 574-715 35-155 (157)
116 KOG1914 mRNA cleavage and poly 98.3 0.0087 1.9E-07 62.9 36.1 131 165-298 17-165 (656)
117 KOG1125 TPR repeat-containing 98.3 0.00012 2.5E-09 77.1 20.7 214 347-565 296-525 (579)
118 PRK10370 formate-dependent nit 98.3 6.7E-05 1.5E-09 71.8 17.9 154 479-644 23-182 (198)
119 COG5010 TadD Flp pilus assembl 98.3 3.8E-05 8.2E-10 73.0 15.6 134 535-670 63-198 (257)
120 PRK15179 Vi polysaccharide bio 98.2 8.2E-05 1.8E-09 84.4 20.6 140 501-645 84-227 (694)
121 KOG1128 Uncharacterized conser 98.2 2.6E-05 5.7E-10 83.9 15.1 189 467-670 393-583 (777)
122 TIGR03302 OM_YfiO outer membra 98.2 5.3E-05 1.2E-09 75.5 16.3 181 436-637 32-234 (235)
123 PRK15179 Vi polysaccharide bio 98.2 0.00011 2.3E-09 83.4 19.4 143 467-613 81-229 (694)
124 COG5010 TadD Flp pilus assembl 98.2 0.00012 2.7E-09 69.6 16.5 154 507-663 70-225 (257)
125 TIGR00756 PPR pentatricopeptid 98.1 4.1E-06 8.9E-11 54.7 4.5 35 201-235 1-35 (35)
126 KOG1070 rRNA processing protei 98.1 0.0004 8.8E-09 80.1 22.8 202 337-539 1459-1670(1710)
127 COG4783 Putative Zn-dependent 98.1 0.00056 1.2E-08 70.9 21.0 143 506-670 309-455 (484)
128 TIGR00756 PPR pentatricopeptid 98.1 6.3E-06 1.4E-10 53.8 4.4 35 504-538 1-35 (35)
129 TIGR02552 LcrH_SycD type III s 98.0 4E-05 8.7E-10 68.8 10.8 95 575-669 18-114 (135)
130 PLN02789 farnesyltranstransfer 98.0 0.00037 8E-09 71.7 18.5 183 480-667 45-248 (320)
131 COG4783 Putative Zn-dependent 98.0 0.00043 9.4E-09 71.7 17.4 120 547-668 315-436 (484)
132 KOG1914 mRNA cleavage and poly 98.0 0.038 8.2E-07 58.3 35.3 143 317-460 347-495 (656)
133 PF09295 ChAPs: ChAPs (Chs5p-A 97.9 0.00019 4.2E-09 75.2 15.1 122 541-667 172-295 (395)
134 PRK14720 transcript cleavage f 97.9 0.00052 1.1E-08 78.7 19.3 46 606-651 223-268 (906)
135 KOG0624 dsRNA-activated protei 97.9 0.028 6E-07 55.7 28.7 314 203-566 41-369 (504)
136 PF13812 PPR_3: Pentatricopept 97.9 1.5E-05 3.2E-10 51.6 4.1 34 200-233 1-34 (34)
137 PF13812 PPR_3: Pentatricopept 97.9 1.8E-05 3.9E-10 51.2 4.1 34 98-131 1-34 (34)
138 KOG3081 Vesicle coat complex C 97.8 0.0053 1.1E-07 58.7 21.0 72 588-659 187-260 (299)
139 TIGR02552 LcrH_SycD type III s 97.8 0.00035 7.6E-09 62.6 12.7 113 525-641 5-120 (135)
140 KOG3060 Uncharacterized conser 97.8 0.0031 6.6E-08 59.8 18.1 161 481-644 61-229 (289)
141 KOG2053 Mitochondrial inherita 97.8 0.12 2.6E-06 58.1 36.9 91 577-667 439-534 (932)
142 PF09976 TPR_21: Tetratricopep 97.8 0.00062 1.3E-08 61.8 13.5 114 551-665 24-143 (145)
143 KOG3060 Uncharacterized conser 97.7 0.0016 3.4E-08 61.7 15.5 182 485-670 25-221 (289)
144 PF01535 PPR: PPR repeat; Int 97.7 4.2E-05 9.2E-10 48.1 3.6 31 201-231 1-31 (31)
145 cd00189 TPR Tetratricopeptide 97.7 0.00023 4.9E-09 58.8 9.1 93 577-669 3-97 (100)
146 PF09295 ChAPs: ChAPs (Chs5p-A 97.7 0.00094 2E-08 70.1 15.0 122 476-602 173-296 (395)
147 PF13414 TPR_11: TPR repeat; P 97.7 6.9E-05 1.5E-09 58.0 5.0 65 605-669 2-67 (69)
148 PF09976 TPR_21: Tetratricopep 97.7 0.0019 4.1E-08 58.5 15.0 121 509-633 18-145 (145)
149 PLN03088 SGT1, suppressor of 97.7 0.00042 9.2E-09 73.1 12.2 86 584-669 12-99 (356)
150 PRK14720 transcript cleavage f 97.7 0.0084 1.8E-07 69.1 23.0 149 336-514 116-268 (906)
151 PF01535 PPR: PPR repeat; Int 97.6 5.8E-05 1.3E-09 47.5 3.4 31 99-129 1-31 (31)
152 KOG0553 TPR repeat-containing 97.6 0.0006 1.3E-08 66.4 11.1 98 548-648 91-191 (304)
153 TIGR02795 tol_pal_ybgF tol-pal 97.6 0.00064 1.4E-08 59.2 10.4 92 578-669 6-105 (119)
154 KOG0553 TPR repeat-containing 97.6 0.0003 6.6E-09 68.4 8.6 89 581-669 88-178 (304)
155 PF12895 Apc3: Anaphase-promot 97.6 5.5E-05 1.2E-09 61.2 3.0 78 587-665 2-83 (84)
156 TIGR02795 tol_pal_ybgF tol-pal 97.6 0.0013 2.8E-08 57.3 12.0 104 541-644 5-114 (119)
157 PRK10153 DNA-binding transcrip 97.5 0.0018 3.9E-08 71.4 15.5 62 607-669 421-482 (517)
158 PF04840 Vps16_C: Vps16, C-ter 97.5 0.13 2.8E-06 52.9 27.9 120 477-616 182-301 (319)
159 PF13432 TPR_16: Tetratricopep 97.5 0.00023 5.1E-09 54.1 5.3 58 612-669 3-60 (65)
160 PRK15331 chaperone protein Sic 97.5 0.0045 9.7E-08 55.4 13.9 89 580-668 43-133 (165)
161 KOG2280 Vacuolar assembly/sort 97.4 0.3 6.5E-06 53.9 30.2 339 228-599 425-795 (829)
162 PRK02603 photosystem I assembl 97.4 0.0037 8E-08 58.6 13.4 128 504-655 36-166 (172)
163 KOG3081 Vesicle coat complex C 97.4 0.014 3E-07 56.0 16.7 141 524-671 94-238 (299)
164 PRK02603 photosystem I assembl 97.3 0.0016 3.5E-08 61.1 10.4 81 575-655 36-121 (172)
165 PLN03088 SGT1, suppressor of 97.3 0.0022 4.8E-08 67.7 12.5 99 548-649 12-113 (356)
166 PF13432 TPR_16: Tetratricopep 97.3 0.00058 1.3E-08 51.9 5.9 61 580-640 3-65 (65)
167 CHL00033 ycf3 photosystem I as 97.3 0.0014 3.1E-08 61.2 9.7 93 574-666 35-139 (168)
168 KOG0550 Molecular chaperone (D 97.3 0.0029 6.3E-08 64.1 11.9 153 512-670 178-351 (486)
169 cd00189 TPR Tetratricopeptide 97.3 0.0026 5.7E-08 52.2 10.3 61 577-637 37-99 (100)
170 KOG2041 WD40 repeat protein [G 97.3 0.22 4.7E-06 54.2 26.0 384 184-635 679-1086(1189)
171 COG4235 Cytochrome c biogenesi 97.2 0.0014 3E-08 64.3 8.5 100 572-671 154-258 (287)
172 PF13371 TPR_9: Tetratricopept 97.1 0.001 2.2E-08 52.0 5.8 58 613-670 2-59 (73)
173 KOG2053 Mitochondrial inherita 97.1 0.73 1.6E-05 52.1 40.6 157 505-667 438-606 (932)
174 PF05843 Suf: Suppressor of fo 97.1 0.0099 2.1E-07 60.5 13.8 133 505-640 3-141 (280)
175 PF13431 TPR_17: Tetratricopep 97.1 0.00024 5.3E-09 45.4 1.1 32 629-660 2-33 (34)
176 KOG1538 Uncharacterized conser 97.0 0.18 4E-06 54.2 22.4 209 359-632 623-843 (1081)
177 CHL00033 ycf3 photosystem I as 97.0 0.018 3.9E-07 53.7 14.1 63 504-566 36-100 (168)
178 PF14559 TPR_19: Tetratricopep 97.0 0.0005 1.1E-08 52.9 2.9 53 617-669 2-54 (68)
179 PF04840 Vps16_C: Vps16, C-ter 97.0 0.51 1.1E-05 48.6 27.6 107 272-394 179-285 (319)
180 PF07079 DUF1347: Protein of u 97.0 0.55 1.2E-05 48.9 32.6 270 46-329 16-326 (549)
181 PF14938 SNAP: Soluble NSF att 97.0 0.5 1.1E-05 48.3 27.2 98 508-606 160-268 (282)
182 PRK10153 DNA-binding transcrip 97.0 0.0092 2E-07 65.9 13.6 144 498-643 332-490 (517)
183 PF13414 TPR_11: TPR repeat; P 97.0 0.0013 2.8E-08 50.7 5.1 65 573-637 2-69 (69)
184 PF14559 TPR_19: Tetratricopep 96.9 0.001 2.2E-08 51.1 3.7 56 586-641 3-60 (68)
185 PF14938 SNAP: Soluble NSF att 96.9 0.072 1.6E-06 54.4 18.4 92 548-639 124-229 (282)
186 PF08579 RPM2: Mitochondrial r 96.9 0.0081 1.7E-07 49.6 8.8 81 202-282 27-116 (120)
187 PRK10866 outer membrane biogen 96.9 0.088 1.9E-06 52.2 18.0 170 479-667 39-239 (243)
188 PF12688 TPR_5: Tetratrico pep 96.8 0.03 6.6E-07 48.1 12.5 93 509-601 7-102 (120)
189 PF12895 Apc3: Anaphase-promot 96.8 0.0038 8.1E-08 50.4 6.5 80 516-599 2-83 (84)
190 PLN03098 LPA1 LOW PSII ACCUMUL 96.8 0.0038 8.2E-08 65.2 7.9 65 605-669 74-141 (453)
191 PF10037 MRP-S27: Mitochondria 96.8 0.014 3E-07 61.8 12.0 114 170-283 68-186 (429)
192 KOG1538 Uncharacterized conser 96.7 0.54 1.2E-05 50.9 23.0 260 201-526 557-827 (1081)
193 PF08579 RPM2: Mitochondrial r 96.7 0.03 6.4E-07 46.4 10.5 79 507-586 29-116 (120)
194 COG4700 Uncharacterized protei 96.7 0.17 3.7E-06 45.9 16.1 132 534-667 85-220 (251)
195 KOG2041 WD40 repeat protein [G 96.6 0.078 1.7E-06 57.5 16.1 31 368-398 689-719 (1189)
196 PF13428 TPR_14: Tetratricopep 96.6 0.0029 6.2E-08 43.5 3.9 42 607-648 2-43 (44)
197 PF06239 ECSIT: Evolutionarily 96.6 0.066 1.4E-06 50.2 13.7 113 436-565 46-166 (228)
198 KOG1130 Predicted G-alpha GTPa 96.6 0.0082 1.8E-07 60.7 8.3 129 540-668 197-343 (639)
199 PRK15363 pathogenicity island 96.6 0.041 8.8E-07 49.2 11.8 92 477-569 40-134 (157)
200 PF12688 TPR_5: Tetratrico pep 96.6 0.013 2.8E-07 50.3 8.3 86 581-666 8-101 (120)
201 COG4700 Uncharacterized protei 96.5 0.058 1.3E-06 48.8 12.1 105 565-669 80-189 (251)
202 PRK10803 tol-pal system protei 96.5 0.014 2.9E-07 58.4 9.1 89 581-669 150-246 (263)
203 PF03704 BTAD: Bacterial trans 96.5 0.022 4.8E-07 51.6 9.9 62 607-668 63-124 (146)
204 PF05843 Suf: Suppressor of fo 96.4 0.055 1.2E-06 55.1 13.5 79 452-531 51-135 (280)
205 PF10037 MRP-S27: Mitochondria 96.4 0.038 8.3E-07 58.5 12.3 72 376-447 108-183 (429)
206 PRK10866 outer membrane biogen 96.4 0.43 9.3E-06 47.3 18.9 70 277-346 39-114 (243)
207 KOG2796 Uncharacterized conser 96.3 0.3 6.4E-06 47.0 16.4 169 374-544 139-325 (366)
208 PF13371 TPR_9: Tetratricopept 96.3 0.0088 1.9E-07 46.6 5.6 63 582-644 3-67 (73)
209 COG3898 Uncharacterized membra 96.3 1.5 3.3E-05 44.8 27.6 243 414-669 132-392 (531)
210 KOG4555 TPR repeat-containing 96.3 0.021 4.6E-07 48.2 7.7 90 582-671 51-146 (175)
211 PF13281 DUF4071: Domain of un 96.3 0.21 4.6E-06 51.9 16.7 159 477-638 146-337 (374)
212 KOG2796 Uncharacterized conser 96.3 0.19 4.2E-06 48.2 14.8 168 475-642 139-322 (366)
213 KOG0543 FKBP-type peptidyl-pro 96.2 0.033 7.1E-07 57.1 10.1 64 606-669 257-320 (397)
214 PF06239 ECSIT: Evolutionarily 96.1 0.043 9.4E-07 51.4 9.3 98 492-590 34-154 (228)
215 PRK10803 tol-pal system protei 96.0 0.068 1.5E-06 53.4 11.5 92 549-640 154-251 (263)
216 KOG0550 Molecular chaperone (D 95.9 0.54 1.2E-05 48.4 16.7 87 548-638 259-353 (486)
217 PF13424 TPR_12: Tetratricopep 95.9 0.0082 1.8E-07 47.5 3.4 60 608-667 7-73 (78)
218 COG0457 NrfG FOG: TPR repeat [ 95.8 2 4.4E-05 41.7 25.0 193 473-669 60-265 (291)
219 PF07079 DUF1347: Protein of u 95.7 3.3 7.1E-05 43.5 37.7 391 202-611 79-530 (549)
220 COG3898 Uncharacterized membra 95.6 3.3 7.2E-05 42.5 27.6 267 334-612 116-401 (531)
221 PF09205 DUF1955: Domain of un 95.5 0.75 1.6E-05 39.3 13.4 141 513-672 12-152 (161)
222 KOG1130 Predicted G-alpha GTPa 95.4 0.23 5E-06 50.7 12.0 131 504-634 196-343 (639)
223 PF13424 TPR_12: Tetratricopep 95.3 0.021 4.5E-07 45.2 3.9 59 577-635 8-75 (78)
224 KOG2280 Vacuolar assembly/sort 95.3 6.6 0.00014 44.0 26.0 359 107-494 398-792 (829)
225 KOG1920 IkappaB kinase complex 95.2 5.4 0.00012 47.0 23.5 158 385-601 894-1053(1265)
226 KOG1585 Protein required for f 95.2 3.1 6.7E-05 39.9 19.1 87 576-663 152-250 (308)
227 PF12921 ATP13: Mitochondrial 95.2 0.084 1.8E-06 45.9 7.3 94 473-582 3-96 (126)
228 PRK11906 transcriptional regul 95.1 0.23 5E-06 52.4 11.5 79 590-668 320-400 (458)
229 KOG2114 Vacuolar assembly/sort 95.0 8.3 0.00018 43.8 26.4 120 69-196 336-459 (933)
230 KOG0543 FKBP-type peptidyl-pro 94.9 0.48 1E-05 48.8 13.0 94 576-669 259-355 (397)
231 COG4235 Cytochrome c biogenesi 94.8 0.85 1.9E-05 45.3 14.0 102 537-640 155-261 (287)
232 KOG2114 Vacuolar assembly/sort 94.8 9.3 0.0002 43.4 29.4 115 174-297 340-458 (933)
233 PLN03098 LPA1 LOW PSII ACCUMUL 94.8 0.16 3.4E-06 53.5 9.4 62 574-635 75-141 (453)
234 PF13525 YfiO: Outer membrane 94.8 1 2.2E-05 43.4 14.6 140 510-669 12-170 (203)
235 PF13525 YfiO: Outer membrane 94.7 0.88 1.9E-05 43.8 13.8 162 480-660 13-198 (203)
236 PRK11906 transcriptional regul 94.6 1.7 3.7E-05 46.1 16.5 158 504-665 252-432 (458)
237 PF00515 TPR_1: Tetratricopept 94.6 0.049 1.1E-06 34.7 3.4 33 607-639 2-34 (34)
238 COG0457 NrfG FOG: TPR repeat [ 94.5 4.9 0.00011 38.9 25.1 164 471-638 94-268 (291)
239 PF04184 ST7: ST7 protein; In 94.4 1.2 2.6E-05 47.4 14.4 115 606-722 259-382 (539)
240 PF07719 TPR_2: Tetratricopept 94.4 0.081 1.8E-06 33.6 4.1 33 607-639 2-34 (34)
241 PF04053 Coatomer_WDAD: Coatom 94.3 0.35 7.7E-06 52.3 11.0 133 512-670 270-403 (443)
242 COG5107 RNA14 Pre-mRNA 3'-end 94.2 8.5 0.00018 40.4 26.6 145 472-621 397-550 (660)
243 PF10300 DUF3808: Protein of u 94.1 1.2 2.6E-05 49.0 15.0 160 507-669 192-376 (468)
244 PF13512 TPR_18: Tetratricopep 94.0 0.76 1.6E-05 40.5 10.4 61 582-642 18-83 (142)
245 COG1729 Uncharacterized protei 93.9 0.49 1.1E-05 46.3 9.9 98 506-606 145-248 (262)
246 COG3118 Thioredoxin domain-con 93.7 2.6 5.6E-05 41.8 14.6 119 513-633 144-263 (304)
247 smart00299 CLH Clathrin heavy 93.6 2.1 4.6E-05 38.2 13.3 66 539-617 70-136 (140)
248 PF03704 BTAD: Bacterial trans 93.4 0.61 1.3E-05 42.1 9.5 69 507-576 66-138 (146)
249 KOG1941 Acetylcholine receptor 93.4 0.41 8.9E-06 48.2 8.6 123 543-665 127-271 (518)
250 smart00299 CLH Clathrin heavy 93.4 5.2 0.00011 35.7 15.5 84 240-327 12-95 (140)
251 COG1729 Uncharacterized protei 93.3 0.38 8.3E-06 47.1 8.2 82 586-669 153-244 (262)
252 KOG2066 Vacuolar assembly/sort 93.2 18 0.00039 40.9 24.2 75 271-348 393-467 (846)
253 PF04053 Coatomer_WDAD: Coatom 93.1 1.2 2.6E-05 48.3 12.5 101 278-395 326-426 (443)
254 PF12921 ATP13: Mitochondrial 92.9 0.93 2E-05 39.5 9.3 82 537-618 1-100 (126)
255 COG3118 Thioredoxin domain-con 92.7 4.1 8.8E-05 40.5 14.2 121 546-669 142-265 (304)
256 PF04184 ST7: ST7 protein; In 92.6 11 0.00024 40.4 17.9 55 509-564 265-321 (539)
257 PRK15331 chaperone protein Sic 92.5 2.3 5E-05 38.5 11.2 85 515-602 49-133 (165)
258 KOG2610 Uncharacterized conser 91.8 4.5 9.8E-05 40.6 13.2 152 485-641 116-284 (491)
259 COG4105 ComL DNA uptake lipopr 91.8 13 0.00029 36.3 16.2 166 483-668 45-232 (254)
260 KOG3941 Intermediate in Toll s 91.7 1 2.2E-05 43.9 8.6 100 491-591 53-175 (406)
261 KOG1920 IkappaB kinase complex 91.5 34 0.00074 40.8 21.7 107 483-604 919-1029(1265)
262 KOG3941 Intermediate in Toll s 91.5 1.5 3.3E-05 42.7 9.5 99 85-183 52-173 (406)
263 PF13512 TPR_18: Tetratricopep 91.3 4.1 8.9E-05 36.0 11.3 111 513-640 20-133 (142)
264 PRK09687 putative lyase; Provi 91.2 19 0.00041 36.6 26.4 79 369-449 35-117 (280)
265 KOG2610 Uncharacterized conser 90.9 1.9 4.2E-05 43.1 9.8 159 515-676 115-283 (491)
266 PRK09687 putative lyase; Provi 90.9 20 0.00044 36.4 25.2 76 469-549 203-278 (280)
267 KOG4234 TPR repeat-containing 90.8 0.57 1.2E-05 43.2 5.7 89 582-670 103-198 (271)
268 PF10300 DUF3808: Protein of u 90.6 4.1 8.8E-05 44.9 13.4 81 486-566 247-333 (468)
269 COG4105 ComL DNA uptake lipopr 90.6 18 0.0004 35.4 16.4 138 508-669 39-196 (254)
270 KOG1258 mRNA processing protei 90.5 31 0.00067 38.0 29.7 410 198-655 43-490 (577)
271 PF02259 FAT: FAT domain; Int 90.4 18 0.00039 38.2 18.2 147 502-651 145-303 (352)
272 PF13181 TPR_8: Tetratricopept 90.4 0.39 8.4E-06 30.4 3.2 31 608-638 3-33 (34)
273 PF13281 DUF4071: Domain of un 90.3 26 0.00057 36.8 19.3 70 377-446 147-226 (374)
274 KOG4555 TPR repeat-containing 89.9 1.8 3.9E-05 37.0 7.4 87 549-637 54-146 (175)
275 PF13176 TPR_7: Tetratricopept 89.9 0.41 8.8E-06 31.0 3.0 26 609-634 2-27 (36)
276 COG4785 NlpI Lipoprotein NlpI, 89.8 8.5 0.00018 36.3 12.4 180 484-670 77-267 (297)
277 PF09205 DUF1955: Domain of un 88.8 5.5 0.00012 34.3 9.5 63 304-367 89-151 (161)
278 PF13176 TPR_7: Tetratricopept 88.7 0.6 1.3E-05 30.2 3.1 26 642-667 1-26 (36)
279 PF13428 TPR_14: Tetratricopep 88.4 0.97 2.1E-05 30.8 4.2 38 576-613 3-42 (44)
280 KOG2063 Vacuolar assembly/sort 88.3 50 0.0011 38.9 20.0 141 184-347 494-637 (877)
281 PF04097 Nic96: Nup93/Nic96; 88.3 14 0.0003 42.4 15.8 85 410-499 266-354 (613)
282 PF09613 HrpB1_HrpK: Bacterial 87.3 15 0.00033 33.2 12.0 90 545-637 17-108 (160)
283 COG3629 DnrI DNA-binding trans 87.0 2.9 6.2E-05 41.8 8.1 74 473-546 154-235 (280)
284 PRK13800 putative oxidoreducta 86.8 83 0.0018 38.2 23.6 255 392-668 625-880 (897)
285 COG2976 Uncharacterized protei 86.4 25 0.00054 32.8 13.1 114 521-638 70-191 (207)
286 PF04097 Nic96: Nup93/Nic96; 86.4 68 0.0015 36.8 22.8 47 200-248 112-158 (613)
287 COG3629 DnrI DNA-binding trans 86.0 2.6 5.7E-05 42.0 7.3 61 608-668 155-215 (280)
288 KOG1941 Acetylcholine receptor 85.8 34 0.00073 35.2 14.6 52 443-494 128-184 (518)
289 PF09613 HrpB1_HrpK: Bacterial 85.4 2.5 5.3E-05 38.1 6.1 57 614-670 18-74 (160)
290 KOG2396 HAT (Half-A-TPR) repea 85.4 58 0.0013 35.1 29.4 103 534-639 455-564 (568)
291 KOG4648 Uncharacterized conser 85.3 1.2 2.6E-05 44.6 4.5 110 544-660 103-215 (536)
292 COG5107 RNA14 Pre-mRNA 3'-end 85.3 55 0.0012 34.7 34.9 151 486-640 380-536 (660)
293 PRK11619 lytic murein transgly 85.2 79 0.0017 36.5 30.9 74 376-451 104-177 (644)
294 PF13170 DUF4003: Protein of u 84.8 11 0.00024 38.5 11.4 92 488-582 119-225 (297)
295 KOG1585 Protein required for f 84.3 42 0.00091 32.6 18.4 144 474-630 93-251 (308)
296 TIGR02508 type_III_yscG type I 84.3 8.4 0.00018 31.3 7.9 58 482-542 49-106 (115)
297 TIGR02561 HrpB1_HrpK type III 84.2 4.5 9.7E-05 35.8 7.0 54 618-671 22-75 (153)
298 PF07035 Mic1: Colon cancer-as 83.9 35 0.00075 31.3 13.5 132 221-364 15-148 (167)
299 KOG4648 Uncharacterized conser 83.8 3.1 6.6E-05 41.8 6.5 86 510-606 104-198 (536)
300 PF10602 RPN7: 26S proteasome 83.7 12 0.00027 34.9 10.4 94 506-601 39-140 (177)
301 PF13170 DUF4003: Protein of u 83.1 26 0.00057 35.8 13.3 60 419-478 160-223 (297)
302 PF08631 SPO22: Meiosis protei 83.0 57 0.0012 33.1 25.9 19 614-632 254-272 (278)
303 KOG1464 COP9 signalosome, subu 83.0 48 0.001 32.5 13.8 231 384-619 40-317 (440)
304 KOG1586 Protein required for f 82.7 36 0.00077 32.8 12.6 17 482-498 24-40 (288)
305 PF14853 Fis1_TPR_C: Fis1 C-te 82.6 3.7 8E-05 29.3 4.9 32 611-642 6-37 (53)
306 KOG2066 Vacuolar assembly/sort 82.5 97 0.0021 35.5 21.1 28 476-503 509-536 (846)
307 COG4649 Uncharacterized protei 82.5 19 0.00041 32.9 10.2 49 283-331 71-124 (221)
308 PF10602 RPN7: 26S proteasome 82.4 8.2 0.00018 36.0 8.7 60 100-159 38-99 (177)
309 PF07035 Mic1: Colon cancer-as 82.4 40 0.00087 30.9 14.9 39 257-295 16-54 (167)
310 PF00515 TPR_1: Tetratricopept 82.2 1.9 4.1E-05 27.2 3.1 27 505-531 3-29 (34)
311 KOG0890 Protein kinase of the 81.9 1.8E+02 0.0039 38.1 30.0 307 345-670 1392-1732(2382)
312 COG1747 Uncharacterized N-term 81.2 86 0.0019 34.0 20.5 92 403-499 67-158 (711)
313 PF10345 Cohesin_load: Cohesin 81.1 1.1E+02 0.0024 35.2 33.2 50 618-667 546-604 (608)
314 KOG0276 Vesicle coat complex C 80.6 18 0.00039 39.6 11.1 148 484-665 598-746 (794)
315 COG4649 Uncharacterized protei 80.6 46 0.001 30.4 14.1 119 513-632 68-193 (221)
316 smart00028 TPR Tetratricopepti 80.4 3 6.5E-05 25.0 3.7 31 608-638 3-33 (34)
317 KOG0890 Protein kinase of the 80.3 2E+02 0.0044 37.7 33.8 365 244-647 1392-1796(2382)
318 PF13174 TPR_6: Tetratricopept 78.6 2.9 6.3E-05 25.9 3.1 27 612-638 6-32 (33)
319 PF02259 FAT: FAT domain; Int 78.3 90 0.002 32.8 16.4 68 604-671 144-215 (352)
320 PRK11619 lytic murein transgly 77.6 1.4E+02 0.0031 34.4 37.3 379 277-674 106-510 (644)
321 PF07721 TPR_4: Tetratricopept 77.5 2.3 4.9E-05 25.0 2.1 23 642-664 3-25 (26)
322 PRK12798 chemotaxis protein; R 77.3 1E+02 0.0023 32.7 23.5 206 485-717 125-348 (421)
323 PF00637 Clathrin: Region in C 77.0 3 6.5E-05 37.4 3.9 86 138-227 12-97 (143)
324 KOG4570 Uncharacterized conser 76.8 14 0.0003 37.1 8.3 102 466-567 58-164 (418)
325 PF07719 TPR_2: Tetratricopept 76.8 3.5 7.7E-05 25.7 3.1 26 506-531 4-29 (34)
326 PF06552 TOM20_plant: Plant sp 76.5 13 0.00027 34.3 7.4 46 622-667 51-100 (186)
327 PRK10941 hypothetical protein; 76.5 13 0.00027 37.4 8.4 62 608-669 183-244 (269)
328 KOG0276 Vesicle coat complex C 76.1 20 0.00044 39.2 9.9 101 280-397 647-747 (794)
329 PF14853 Fis1_TPR_C: Fis1 C-te 76.0 14 0.0003 26.4 6.1 49 643-717 4-52 (53)
330 KOG4642 Chaperone-dependent E3 76.0 16 0.00034 35.2 8.2 83 587-669 23-107 (284)
331 PHA02875 ankyrin repeat protei 75.7 1.2E+02 0.0026 32.9 16.7 146 177-335 74-229 (413)
332 PF00637 Clathrin: Region in C 75.6 2.1 4.6E-05 38.4 2.5 84 241-327 13-96 (143)
333 KOG4570 Uncharacterized conser 75.4 25 0.00054 35.3 9.6 100 165-265 61-165 (418)
334 PRK15180 Vi polysaccharide bio 75.4 26 0.00057 37.2 10.3 120 515-638 301-423 (831)
335 PF13374 TPR_10: Tetratricopep 75.1 4.9 0.00011 26.5 3.6 26 608-633 4-29 (42)
336 KOG1308 Hsp70-interacting prot 74.8 1.7 3.6E-05 43.9 1.7 90 586-675 126-217 (377)
337 TIGR02508 type_III_yscG type I 74.6 46 0.001 27.3 9.5 61 378-441 46-106 (115)
338 KOG1550 Extracellular protein 74.4 1.6E+02 0.0035 33.4 21.4 77 589-669 454-538 (552)
339 PF13374 TPR_10: Tetratricopep 73.9 4.3 9.4E-05 26.8 3.1 29 641-669 3-31 (42)
340 COG4785 NlpI Lipoprotein NlpI, 73.9 8.9 0.00019 36.2 5.9 91 547-640 74-167 (297)
341 cd00923 Cyt_c_Oxidase_Va Cytoc 73.8 27 0.00059 28.4 7.7 62 518-581 22-83 (103)
342 PF13431 TPR_17: Tetratricopep 73.7 5.4 0.00012 25.3 3.3 24 267-290 10-33 (34)
343 PF02284 COX5A: Cytochrome c o 73.0 30 0.00065 28.5 7.9 60 521-582 28-87 (108)
344 KOG1586 Protein required for f 72.8 95 0.0021 30.1 15.3 60 583-642 163-231 (288)
345 PF06552 TOM20_plant: Plant sp 72.5 30 0.00064 32.0 8.8 43 622-671 96-138 (186)
346 COG3947 Response regulator con 72.5 9.5 0.00021 37.7 6.0 60 609-668 282-341 (361)
347 KOG3364 Membrane protein invol 71.3 44 0.00096 29.2 9.0 49 621-669 50-100 (149)
348 KOG4279 Serine/threonine prote 71.1 57 0.0012 36.9 12.0 184 403-638 202-398 (1226)
349 KOG0403 Neoplastic transformat 70.9 1.5E+02 0.0033 31.6 17.5 58 375-432 513-573 (645)
350 TIGR02561 HrpB1_HrpK type III 70.8 68 0.0015 28.7 10.3 65 549-616 21-87 (153)
351 KOG0376 Serine-threonine phosp 70.6 8.1 0.00018 41.1 5.5 87 582-668 12-100 (476)
352 COG2909 MalT ATP-dependent tra 70.1 2.3E+02 0.0049 33.3 22.7 184 484-671 427-649 (894)
353 PF15161 Neuropep_like: Neurop 69.4 2.1 4.5E-05 29.9 0.7 18 764-782 11-28 (65)
354 PF13174 TPR_6: Tetratricopept 69.3 4.6 9.9E-05 24.9 2.3 28 642-669 2-29 (33)
355 PF11207 DUF2989: Protein of u 69.1 40 0.00088 31.8 9.1 74 520-594 123-198 (203)
356 KOG4234 TPR repeat-containing 69.0 39 0.00085 31.7 8.7 61 581-642 141-204 (271)
357 PRK15180 Vi polysaccharide bio 68.8 31 0.00067 36.7 9.1 129 483-616 300-435 (831)
358 PF13181 TPR_8: Tetratricopept 68.7 7.6 0.00017 24.2 3.2 28 641-668 2-29 (34)
359 KOG0292 Vesicle coat complex C 68.2 11 0.00024 43.0 6.1 118 516-665 606-723 (1202)
360 PF11207 DUF2989: Protein of u 68.1 20 0.00043 33.8 6.9 75 585-660 118-198 (203)
361 COG4455 ImpE Protein of avirul 67.7 16 0.00035 34.7 6.1 63 578-640 5-69 (273)
362 KOG0545 Aryl-hydrocarbon recep 67.5 44 0.00094 32.4 9.0 56 614-669 238-293 (329)
363 KOG1498 26S proteasome regulat 67.5 1.7E+02 0.0036 30.8 16.9 193 471-692 51-264 (439)
364 PF08631 SPO22: Meiosis protei 67.2 1.5E+02 0.0032 30.1 22.9 18 512-529 255-272 (278)
365 KOG0403 Neoplastic transformat 65.9 1.9E+02 0.0041 30.9 16.4 57 477-533 514-573 (645)
366 cd00923 Cyt_c_Oxidase_Va Cytoc 65.8 39 0.00084 27.5 7.1 46 217-262 24-69 (103)
367 PF07575 Nucleopor_Nup85: Nup8 65.6 2.3E+02 0.005 32.3 16.5 31 415-445 508-538 (566)
368 PHA02875 ankyrin repeat protei 63.3 2.2E+02 0.0048 30.7 17.4 75 46-121 9-88 (413)
369 PF04910 Tcf25: Transcriptiona 62.0 2.1E+02 0.0046 30.3 14.2 64 605-668 99-167 (360)
370 PF09986 DUF2225: Uncharacteri 61.4 29 0.00062 33.6 7.0 64 607-670 119-195 (214)
371 KOG1258 mRNA processing protei 61.4 2.7E+02 0.0059 31.1 31.3 401 167-620 44-489 (577)
372 PF09670 Cas_Cas02710: CRISPR- 61.3 1.2E+02 0.0025 32.5 12.2 121 513-634 141-269 (379)
373 cd08819 CARD_MDA5_2 Caspase ac 59.9 31 0.00068 27.4 5.6 63 55-118 21-86 (88)
374 KOG4507 Uncharacterized conser 59.9 18 0.0004 39.4 5.7 97 550-649 619-719 (886)
375 PF10345 Cohesin_load: Cohesin 59.2 3.3E+02 0.0072 31.4 32.9 44 383-426 373-428 (608)
376 PRK13342 recombination factor 58.4 2E+02 0.0043 31.3 13.7 48 404-451 229-279 (413)
377 PF13929 mRNA_stabil: mRNA sta 57.9 2.2E+02 0.0047 28.8 13.3 60 367-426 198-262 (292)
378 PF04910 Tcf25: Transcriptiona 57.3 2.6E+02 0.0057 29.6 17.0 89 545-637 110-224 (360)
379 PF13762 MNE1: Mitochondrial s 57.1 1.4E+02 0.003 26.7 9.8 51 198-248 77-128 (145)
380 PF14561 TPR_20: Tetratricopep 57.0 20 0.00043 29.0 4.3 43 627-669 9-51 (90)
381 COG1747 Uncharacterized N-term 56.5 3E+02 0.0066 30.1 19.4 172 199-378 65-246 (711)
382 PRK13800 putative oxidoreducta 56.3 4.5E+02 0.0098 32.0 24.7 254 291-566 625-880 (897)
383 PF09477 Type_III_YscG: Bacter 56.2 1.2E+02 0.0026 25.4 10.1 86 351-440 21-106 (116)
384 PF02284 COX5A: Cytochrome c o 56.1 91 0.002 25.8 7.7 46 420-465 28-73 (108)
385 PF07163 Pex26: Pex26 protein; 54.9 1.2E+02 0.0026 30.3 9.8 87 510-599 90-183 (309)
386 PF13762 MNE1: Mitochondrial s 53.6 55 0.0012 29.2 6.8 81 68-148 40-130 (145)
387 PF11768 DUF3312: Protein of u 53.3 98 0.0021 34.1 9.9 23 477-499 413-435 (545)
388 PF09477 Type_III_YscG: Bacter 53.1 89 0.0019 26.1 7.2 79 250-331 21-99 (116)
389 PF10366 Vps39_1: Vacuolar sor 51.4 89 0.0019 26.3 7.5 28 302-329 40-67 (108)
390 TIGR03504 FimV_Cterm FimV C-te 51.2 34 0.00074 23.3 4.0 25 509-533 5-29 (44)
391 PF14427 Pput2613-deam: Pput_2 50.8 42 0.0009 27.7 5.0 58 736-793 45-102 (118)
392 KOG2034 Vacuolar sorting prote 50.2 4.9E+02 0.011 30.7 19.2 176 40-226 362-556 (911)
393 PF07720 TPR_3: Tetratricopept 49.6 33 0.00071 22.2 3.6 30 609-638 4-35 (36)
394 PF14561 TPR_20: Tetratricopep 49.2 1.2E+02 0.0027 24.4 7.8 62 605-666 21-85 (90)
395 KOG0991 Replication factor C, 49.0 2.6E+02 0.0057 27.2 11.0 147 276-447 136-282 (333)
396 KOG1550 Extracellular protein 48.7 4.5E+02 0.0098 29.8 21.6 110 184-297 228-355 (552)
397 KOG2396 HAT (Half-A-TPR) repea 48.6 4E+02 0.0087 29.2 32.4 106 489-597 445-553 (568)
398 COG2976 Uncharacterized protei 48.4 2.4E+02 0.0053 26.6 13.5 88 345-432 98-189 (207)
399 PF11838 ERAP1_C: ERAP1-like C 48.1 3.3E+02 0.0072 28.1 20.5 83 553-635 145-230 (324)
400 PF11525 CopK: Copper resistan 47.7 6.7 0.00015 29.1 0.2 20 785-804 8-27 (73)
401 KOG2300 Uncharacterized conser 47.6 4.1E+02 0.0088 29.0 21.5 145 387-531 298-473 (629)
402 COG3947 Response regulator con 47.1 3.2E+02 0.0069 27.6 14.1 55 578-632 283-339 (361)
403 PF15469 Sec5: Exocyst complex 46.9 2.2E+02 0.0047 26.6 10.4 25 543-567 91-115 (182)
404 PF10579 Rapsyn_N: Rapsyn N-te 46.4 48 0.001 25.9 4.6 16 579-594 48-63 (80)
405 cd00280 TRFH Telomeric Repeat 46.0 1.3E+02 0.0029 27.9 8.0 28 613-641 118-145 (200)
406 TIGR02710 CRISPR-associated pr 45.8 3.1E+02 0.0068 29.1 12.0 29 512-540 139-167 (380)
407 PRK10941 hypothetical protein; 45.7 74 0.0016 32.0 7.2 65 578-642 185-251 (269)
408 cd08326 CARD_CASP9 Caspase act 45.5 50 0.0011 26.3 4.8 61 57-117 20-80 (84)
409 PF11846 DUF3366: Domain of un 45.2 79 0.0017 29.9 7.2 34 604-637 142-175 (193)
410 PF12968 DUF3856: Domain of Un 45.2 1.1E+02 0.0023 26.3 6.7 61 606-666 55-126 (144)
411 PF10366 Vps39_1: Vacuolar sor 44.5 1.7E+02 0.0037 24.6 8.2 27 404-430 41-67 (108)
412 TIGR03504 FimV_Cterm FimV C-te 44.4 50 0.0011 22.5 4.0 23 408-430 5-27 (44)
413 TIGR01503 MthylAspMut_E methyl 44.2 38 0.00082 36.2 5.0 109 452-564 69-195 (480)
414 PRK13342 recombination factor 43.8 4.5E+02 0.0099 28.5 15.4 48 505-552 229-279 (413)
415 COG4976 Predicted methyltransf 43.8 39 0.00085 32.4 4.5 58 583-640 4-63 (287)
416 KOG0551 Hsp90 co-chaperone CNS 43.8 76 0.0016 32.4 6.7 87 580-666 87-179 (390)
417 PHA02537 M terminase endonucle 43.6 1.4E+02 0.0031 29.1 8.5 104 513-638 93-210 (230)
418 PF07163 Pex26: Pex26 protein; 43.0 2.3E+02 0.005 28.4 9.7 19 409-427 90-108 (309)
419 PF11663 Toxin_YhaV: Toxin wit 43.0 32 0.00069 30.0 3.5 31 111-143 108-138 (140)
420 KOG4077 Cytochrome c oxidase, 42.9 1.7E+02 0.0037 25.3 7.6 59 521-581 67-125 (149)
421 PF13934 ELYS: Nuclear pore co 41.8 3.4E+02 0.0074 26.5 12.6 106 506-620 79-186 (226)
422 smart00386 HAT HAT (Half-A-TPR 41.5 31 0.00067 20.8 2.6 28 620-647 1-28 (33)
423 KOG3824 Huntingtin interacting 41.0 39 0.00084 33.8 4.2 61 585-645 127-189 (472)
424 cd02679 MIT_spastin MIT: domai 40.5 27 0.00058 27.4 2.5 58 589-668 4-67 (79)
425 PF04190 DUF410: Protein of un 40.1 4E+02 0.0086 26.7 17.8 81 471-567 89-170 (260)
426 PF00244 14-3-3: 14-3-3 protei 39.8 3.8E+02 0.0082 26.4 11.6 162 509-671 7-200 (236)
427 COG4455 ImpE Protein of avirul 39.7 3.6E+02 0.0078 26.1 12.2 125 505-641 3-140 (273)
428 KOG0292 Vesicle coat complex C 38.8 3.4E+02 0.0074 31.9 11.4 131 480-634 651-781 (1202)
429 PF04190 DUF410: Protein of un 38.5 4.2E+02 0.0091 26.5 16.8 37 369-405 88-124 (260)
430 KOG2063 Vacuolar assembly/sort 38.2 7.8E+02 0.017 29.5 19.9 129 404-549 506-637 (877)
431 PF12862 Apc5: Anaphase-promot 37.9 72 0.0016 26.0 4.9 52 617-668 9-69 (94)
432 PF08225 Antimicrobial19: Pseu 37.3 23 0.00049 19.3 1.1 10 771-780 11-20 (23)
433 cd08332 CARD_CASP2 Caspase act 37.3 81 0.0018 25.5 5.0 56 58-113 25-80 (90)
434 COG3019 Predicted metal-bindin 36.4 54 0.0012 28.6 3.9 43 745-789 9-55 (149)
435 KOG2297 Predicted translation 36.3 4.8E+02 0.01 26.6 13.7 61 380-451 175-237 (412)
436 KOG2659 LisH motif-containing 36.0 2.7E+02 0.0057 27.0 8.8 94 505-601 28-130 (228)
437 COG2178 Predicted RNA-binding 35.8 3E+02 0.0066 25.9 8.8 51 482-532 39-98 (204)
438 PF11846 DUF3366: Domain of un 35.4 1.1E+02 0.0024 29.0 6.5 53 549-601 119-171 (193)
439 PF10579 Rapsyn_N: Rapsyn N-te 35.4 1E+02 0.0022 24.2 4.8 47 515-561 18-66 (80)
440 COG0790 FOG: TPR repeat, SEL1 35.3 4.9E+02 0.011 26.4 18.0 76 592-670 173-267 (292)
441 KOG3824 Huntingtin interacting 34.9 52 0.0011 33.0 4.0 53 615-667 125-177 (472)
442 PF12796 Ank_2: Ankyrin repeat 34.4 2E+02 0.0043 22.6 7.1 80 46-132 4-86 (89)
443 cd08819 CARD_MDA5_2 Caspase ac 34.3 2.2E+02 0.0048 22.9 6.6 65 255-321 22-86 (88)
444 PHA03100 ankyrin repeat protei 33.6 6.9E+02 0.015 27.5 14.4 15 78-92 43-57 (480)
445 PRK10564 maltose regulon perip 32.8 70 0.0015 32.3 4.6 41 505-545 259-299 (303)
446 PF14689 SPOB_a: Sensor_kinase 32.7 99 0.0021 22.9 4.4 30 537-566 22-51 (62)
447 PF11848 DUF3368: Domain of un 32.5 1E+02 0.0022 21.4 4.2 32 211-242 13-44 (48)
448 PF09986 DUF2225: Uncharacteri 32.5 4.1E+02 0.0089 25.7 9.9 27 579-605 170-196 (214)
449 PF14689 SPOB_a: Sensor_kinase 31.9 76 0.0016 23.5 3.7 27 505-531 25-51 (62)
450 PF11848 DUF3368: Domain of un 31.8 1.7E+02 0.0037 20.3 5.2 33 514-546 13-45 (48)
451 COG4941 Predicted RNA polymera 31.2 5.1E+02 0.011 26.8 10.2 120 517-640 270-399 (415)
452 KOG4507 Uncharacterized conser 31.2 1.9E+02 0.004 32.1 7.6 126 488-615 589-719 (886)
453 KOG3507 DNA-directed RNA polym 31.0 15 0.00032 26.3 -0.2 11 766-776 20-30 (62)
454 PF14376 Haem_bd: Haem-binding 30.1 15 0.00033 32.5 -0.3 8 767-774 42-49 (137)
455 COG2909 MalT ATP-dependent tra 29.7 1E+03 0.022 28.3 24.6 252 382-634 426-725 (894)
456 KOG1308 Hsp70-interacting prot 29.3 26 0.00055 35.8 1.0 61 617-677 125-185 (377)
457 PF09670 Cas_Cas02710: CRISPR- 28.7 5.4E+02 0.012 27.5 10.9 54 547-602 140-197 (379)
458 PF14863 Alkyl_sulf_dimr: Alky 27.8 1.4E+02 0.0031 26.5 5.4 63 591-656 58-120 (141)
459 KOG3364 Membrane protein invol 27.7 4.3E+02 0.0094 23.4 9.5 70 572-641 30-106 (149)
460 COG5431 Uncharacterized metal- 27.6 18 0.00039 29.3 -0.2 12 797-808 46-57 (117)
461 KOG3807 Predicted membrane pro 27.5 5.6E+02 0.012 26.3 9.7 103 449-564 228-337 (556)
462 COG5159 RPN6 26S proteasome re 27.1 6.6E+02 0.014 25.3 12.3 141 408-598 9-149 (421)
463 smart00544 MA3 Domain in DAP-5 26.6 3.8E+02 0.0083 22.4 8.7 22 377-398 8-29 (113)
464 PF08311 Mad3_BUB1_I: Mad3/BUB 26.6 2.9E+02 0.0063 24.0 7.0 42 624-665 81-124 (126)
465 PF02847 MA3: MA3 domain; Int 26.5 2.1E+02 0.0045 24.0 6.1 23 377-399 8-30 (113)
466 COG4855 Uncharacterized protei 26.0 26 0.00056 25.8 0.3 10 768-777 65-74 (76)
467 COG4976 Predicted methyltransf 25.7 1.1E+02 0.0024 29.5 4.4 56 616-671 5-60 (287)
468 cd08323 CARD_APAF1 Caspase act 25.4 2E+02 0.0043 23.1 5.2 59 57-115 18-76 (86)
469 COG3043 NapB Nitrate reductase 25.3 45 0.00097 29.2 1.6 24 760-785 80-103 (155)
470 PF07575 Nucleopor_Nup85: Nup8 24.9 7.1E+02 0.015 28.4 11.8 58 436-495 404-461 (566)
471 KOG4642 Chaperone-dependent E3 24.6 6.8E+02 0.015 24.6 9.3 112 485-598 23-141 (284)
472 COG3058 FdhE Uncharacterized p 24.6 40 0.00087 33.1 1.4 19 767-785 253-271 (308)
473 PF10475 DUF2450: Protein of u 24.5 4.4E+02 0.0096 26.9 9.1 52 377-430 104-155 (291)
474 KOG4334 Uncharacterized conser 24.1 55 0.0012 34.8 2.3 145 128-283 410-573 (650)
475 PRK10564 maltose regulon perip 23.8 1E+02 0.0022 31.2 4.0 36 203-238 260-295 (303)
476 PF11663 Toxin_YhaV: Toxin wit 23.8 55 0.0012 28.5 1.9 41 505-547 97-137 (140)
477 PF12796 Ank_2: Ankyrin repeat 23.6 2.6E+02 0.0057 21.9 6.0 13 282-294 35-47 (89)
478 PF01147 Crust_neurohorm: Crus 23.4 20 0.00043 27.5 -0.7 14 764-777 18-31 (73)
479 cd08326 CARD_CASP9 Caspase act 23.3 2.3E+02 0.005 22.6 5.2 61 256-320 20-80 (84)
480 PRK11639 zinc uptake transcrip 23.2 2.3E+02 0.0049 26.2 6.1 51 200-250 25-75 (169)
481 PF11768 DUF3312: Protein of u 23.2 5.3E+02 0.012 28.7 9.5 56 375-430 412-472 (545)
482 PRK11639 zinc uptake transcrip 23.1 2.6E+02 0.0057 25.8 6.4 48 305-352 29-76 (169)
483 PRK11509 hydrogenase-1 operon 22.7 2.1E+02 0.0045 25.2 5.3 71 679-766 30-101 (132)
484 PF06957 COPI_C: Coatomer (COP 22.3 1.9E+02 0.0041 31.1 5.9 32 608-639 302-333 (422)
485 PF10255 Paf67: RNA polymerase 21.7 1.6E+02 0.0034 31.6 5.2 57 611-667 127-191 (404)
486 COG2912 Uncharacterized conser 21.7 2E+02 0.0043 28.7 5.5 60 610-669 185-244 (269)
487 COG0735 Fur Fe2+/Zn2+ uptake r 21.6 2.6E+02 0.0057 25.0 6.0 46 202-247 22-67 (145)
488 PF13929 mRNA_stabil: mRNA sta 21.6 8.6E+02 0.019 24.7 19.6 35 47-81 7-41 (292)
489 COG5071 RPN5 26S proteasome re 21.6 5.3E+02 0.012 26.1 8.2 114 579-692 136-264 (439)
490 PRK14700 recombination factor 21.5 6.3E+02 0.014 25.8 9.0 48 405-452 126-176 (300)
491 PRK13341 recombination factor 21.5 1.4E+03 0.03 27.0 15.4 58 413-470 269-331 (725)
492 KOG4077 Cytochrome c oxidase, 21.5 4E+02 0.0087 23.2 6.4 45 421-465 68-112 (149)
493 COG0790 FOG: TPR repeat, SEL1 21.3 8.5E+02 0.018 24.5 17.6 129 487-620 92-236 (292)
494 PRK09169 hypothetical protein; 21.3 2.1E+03 0.046 29.2 41.8 365 302-666 247-692 (2316)
495 COG0735 Fur Fe2+/Zn2+ uptake r 21.2 2.9E+02 0.0064 24.7 6.2 44 305-348 24-67 (145)
496 PF12968 DUF3856: Domain of Un 21.2 5.4E+02 0.012 22.2 8.8 58 577-634 58-128 (144)
497 COG2178 Predicted RNA-binding 20.9 7.2E+02 0.016 23.5 8.8 18 651-668 132-149 (204)
498 PHA03100 ankyrin repeat protei 20.9 1.1E+03 0.024 25.8 15.7 87 42-132 38-135 (480)
499 PF08311 Mad3_BUB1_I: Mad3/BUB 20.3 5.7E+02 0.012 22.1 9.2 43 455-497 81-124 (126)
500 cd08327 CARD_RAIDD Caspase act 20.3 3.7E+02 0.0081 22.0 5.9 50 60-109 28-77 (94)
No 1
>PLN03077 Protein ECB2; Provisional
Probab=100.00 E-value=3e-150 Score=1328.69 Aligned_cols=783 Identities=36% Similarity=0.652 Sum_probs=753.6
Q ss_pred CcccccccccCCCCC-cchHHHHHHHHhcCCChHHHHHHHHh----cCCCCcchHHHHHHHHHccCChhHHHHHhhhCCC
Q 003584 21 GPARYTHNVGNSVKP-ASDLNRALVDFSNSGEIDEAGQLFEK----MSDRDGFTWNTMIAAYANSGRLREAKKLFNETPF 95 (809)
Q Consensus 21 ~~~~~~~~~~~~~~~-~~~~~~ll~~~~~~~~~~~a~~~~~~----~~~~~~~~~~~li~~~~~~g~~~~A~~~f~~~~~ 95 (809)
+..+|..+...+.+| ..++..++.+|.+.+.++.|..++.. +..++..++|+|+++|+++|+++.|+++|++|++
T Consensus 70 A~~l~~~m~~~g~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~n~li~~~~~~g~~~~A~~~f~~m~~ 149 (857)
T PLN03077 70 ALKLLESMQELRVPVDEDAYVALFRLCEWKRAVEEGSRVCSRALSSHPSLGVRLGNAMLSMFVRFGELVHAWYVFGKMPE 149 (857)
T ss_pred HHHHHHHHHhcCCCCChhHHHHHHHHHhhCCCHHHHHHHHHHHHHcCCCCCchHHHHHHHHHHhCCChHHHHHHHhcCCC
Confidence 333444444444333 44566666666666666666666443 3446778889999999999999999999999999
Q ss_pred CCcchHHHHHHHHHcCCCchhHHHHHHHHHHcCCCCCcccHHHHHHHhhcCCCchHHHHHHHHHHHhCCCCchHHHHHHH
Q 003584 96 KNFFTWSSLIYGYSNYGLDIEAFELFWQMQLEGYRPSQYTLDNVLRLCSLKGLLQRGEQFHGYAIKTCFDLNAFVVTGLV 175 (809)
Q Consensus 96 ~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li 175 (809)
||+++||+||.+|++.|++++|+++|++|...|+.||.+||+++|++|+..+++..+.++|..+++.|+.||..++|+||
T Consensus 150 ~d~~~~n~li~~~~~~g~~~~A~~~f~~M~~~g~~Pd~~t~~~ll~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~n~Li 229 (857)
T PLN03077 150 RDLFSWNVLVGGYAKAGYFDEALCLYHRMLWAGVRPDVYTFPCVLRTCGGIPDLARGREVHAHVVRFGFELDVDVVNALI 229 (857)
T ss_pred CCeeEHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCChhHHHHHHHHhCCccchhhHHHHHHHHHHcCCCcccchHhHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HhhhcCCChhHHHHHhhhCCCCCCcccHHHHHHHHhhCCChHHHHHHHHHHHHCCCCCCcchHHHHHHHHhccCChHHHH
Q 003584 176 DMYAKCKCIFEAEYLFKMFPDGKNHVAWTTMITGYSQNGYGFKAIECFRDMRVEGVESNQFTFPSILTACAAVSARDFGA 255 (809)
Q Consensus 176 ~~y~~~g~~~~A~~~f~~~~~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~ 255 (809)
.+|+++|++++|.++|++|+. +|+++||+||.+|+++|++++|+++|++|.+.|+.||..||+.++.+|++.|+++.|+
T Consensus 230 ~~y~k~g~~~~A~~lf~~m~~-~d~~s~n~li~~~~~~g~~~eAl~lf~~M~~~g~~Pd~~ty~~ll~a~~~~g~~~~a~ 308 (857)
T PLN03077 230 TMYVKCGDVVSARLVFDRMPR-RDCISWNAMISGYFENGECLEGLELFFTMRELSVDPDLMTITSVISACELLGDERLGR 308 (857)
T ss_pred HHHhcCCCHHHHHHHHhcCCC-CCcchhHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCChhHHHHHHHHHHhcCChHHHH
Confidence 999999999999999999999 9999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHhCCCCchhHHHHHHHHHHhCCChHHHHHHHhccCCCCeeeHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCC
Q 003584 256 QVHGCILSSGFEANVYVQSALIDMYAKCGDLDSARRLLEYSEIDNEVSWNSMIVGFARQGFHKEALSLFKKMHARDIKID 335 (809)
Q Consensus 256 ~~~~~~~~~g~~~~~~~~~~Li~~y~~~g~~~~A~~~f~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~ 335 (809)
++|..+.+.|+.||..+||+|+++|+++|++++|.++|++|..||+++||+||.+|++.|++++|+++|++|.+.|+.||
T Consensus 309 ~l~~~~~~~g~~~d~~~~n~Li~~y~k~g~~~~A~~vf~~m~~~d~~s~n~li~~~~~~g~~~~A~~lf~~M~~~g~~Pd 388 (857)
T PLN03077 309 EMHGYVVKTGFAVDVSVCNSLIQMYLSLGSWGEAEKVFSRMETKDAVSWTAMISGYEKNGLPDKALETYALMEQDNVSPD 388 (857)
T ss_pred HHHHHHHHhCCccchHHHHHHHHHHHhcCCHHHHHHHHhhCCCCCeeeHHHHHHHHHhCCCHHHHHHHHHHHHHhCCCCC
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cccHHHHHHHhhcCCChHHHHHHHHHHHHhccCCchHHHHHHHHHHHhcCCHHHHHHHHhhcCCCCHhHHHHHHHHHHhc
Q 003584 336 DFTYPSVLNCFASNIDLNNAKSVHSLIVKTGFEGYKFVNNALIDMYAKQGNLDCAFMVFNLMQDKDVISWTSLITGCAYH 415 (809)
Q Consensus 336 ~~t~~~ll~~~~~~~~~~~a~~i~~~~~~~g~~~~~~~~~~li~~y~~~g~~~~A~~~f~~~~~~~~~~~~~li~~~~~~ 415 (809)
..||+.++.+|++.|+++.|.++|+.+.+.|+.|+..++|+|+++|+++|++++|.++|++|.++|+++||+||.+|+++
T Consensus 389 ~~t~~~ll~a~~~~g~~~~a~~l~~~~~~~g~~~~~~~~n~Li~~y~k~g~~~~A~~vf~~m~~~d~vs~~~mi~~~~~~ 468 (857)
T PLN03077 389 EITIASVLSACACLGDLDVGVKLHELAERKGLISYVVVANALIEMYSKCKCIDKALEVFHNIPEKDVISWTSIIAGLRLN 468 (857)
T ss_pred ceeHHHHHHHHhccchHHHHHHHHHHHHHhCCCcchHHHHHHHHHHHHcCCHHHHHHHHHhCCCCCeeeHHHHHHHHHHC
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCHHHHHHHHHHHhhcCCccCHhHHHHHHHHHhcccchhHHHHHHHHHHHhCCCCChhHHhHHHHHHHhcCCHHHHHHHH
Q 003584 416 GSYEEALKYFSDMRISGICPDHVVVSSILSACAELTVLEFGQQVHAVFLKSGGCSSLSVDNSLVLVYAKCGCINDANRVF 495 (809)
Q Consensus 416 g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~y~k~g~~~~A~~~~ 495 (809)
|+.++|+++|++|.. ++.||..||+++|.+|++.|.++.++++|..+.+.|+.++..++|+|+++|+|+|++++|.++|
T Consensus 469 g~~~eA~~lf~~m~~-~~~pd~~t~~~lL~a~~~~g~l~~~~~i~~~~~~~g~~~~~~~~naLi~~y~k~G~~~~A~~~f 547 (857)
T PLN03077 469 NRCFEALIFFRQMLL-TLKPNSVTLIAALSACARIGALMCGKEIHAHVLRTGIGFDGFLPNALLDLYVRCGRMNYAWNQF 547 (857)
T ss_pred CCHHHHHHHHHHHHh-CCCCCHhHHHHHHHHHhhhchHHHhHHHHHHHHHhCCCccceechHHHHHHHHcCCHHHHHHHH
Confidence 999999999999986 6999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HhcCCCCeeechHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHhHHhhCCCCChH
Q 003584 496 DSMHTRDVITWTALIMGCAQNGKGKEALQFYDQMLARGTKPDYITFVGLLFACSHAGLAENARWYFESMDKVYGIKPGPD 575 (809)
Q Consensus 496 ~~~~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~pd~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~~~ 575 (809)
+.+ .+|+++||+||.+|+++|+.++|+++|++|.+.|+.||.+||+.++.+|++.|++++|.++|+.|.+.+|+.|+..
T Consensus 548 ~~~-~~d~~s~n~lI~~~~~~G~~~~A~~lf~~M~~~g~~Pd~~T~~~ll~a~~~~g~v~ea~~~f~~M~~~~gi~P~~~ 626 (857)
T PLN03077 548 NSH-EKDVVSWNILLTGYVAHGKGSMAVELFNRMVESGVNPDEVTFISLLCACSRSGMVTQGLEYFHSMEEKYSITPNLK 626 (857)
T ss_pred Hhc-CCChhhHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCcccHHHHHHHHhhcChHHHHHHHHHHHHHHhCCCCchH
Confidence 999 9999999999999999999999999999999999999999999999999999999999999999998889999999
Q ss_pred HHHHHHHHHhhcCCHHHHHHHHHhCcCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHhccCCCCCccHHhHhhhhhhcCC
Q 003584 576 HYACMIDLLGRSGKLIEAKALLDQMVGEPDATVWKALLSACRVHGDLELGERAANNLFELEPMNAMPYVQLSNMYSTAGK 655 (809)
Q Consensus 576 ~~~~li~~~~~~g~~~eA~~~~~~m~~~p~~~~~~~ll~a~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~ 655 (809)
+|++|+++|+|+|++++|.+++++|+.+||..+|++|+.+|+.+|+.+.|+.+++++++++|++++.|+.|+++|+..|+
T Consensus 627 ~y~~lv~~l~r~G~~~eA~~~~~~m~~~pd~~~~~aLl~ac~~~~~~e~~e~~a~~l~~l~p~~~~~y~ll~n~ya~~g~ 706 (857)
T PLN03077 627 HYACVVDLLGRAGKLTEAYNFINKMPITPDPAVWGALLNACRIHRHVELGELAAQHIFELDPNSVGYYILLCNLYADAGK 706 (857)
T ss_pred HHHHHHHHHHhCCCHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHhhCCCCcchHHHHHHHHHHCCC
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hhHHHHHHHHHHhCCCccCCceeEEEECCEEEEEEeCCCCCcchHHHHHHHHHHHHHHHHcCCccCCccccccccchhhh
Q 003584 656 WEDAARVRKLMKSRGIRKEPGCSWVETNSQVHIFISEDRGHPLRTDIYSKIDEIMLLIKEAGYVPDMNFALHNVEEEGKE 735 (809)
Q Consensus 656 ~~~A~~~~~~m~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~i~~~l~~l~~~~~~~g~~~~~~~~~~~~~~~~~~ 735 (809)
|++|.++++.|+++|++|+||+|||++++.+|.|++||.+||+.++||..|+++..+|++.||.||+..++ |+++++|+
T Consensus 707 ~~~a~~vr~~M~~~g~~k~~g~s~ie~~~~~~~f~~~d~~h~~~~~i~~~l~~l~~~~~~~g~~~~~~~~~-~~~~~~k~ 785 (857)
T PLN03077 707 WDEVARVRKTMRENGLTVDPGCSWVEVKGKVHAFLTDDESHPQIKEINTVLEGFYEKMKASGLAGSESSSM-DEIEVSKD 785 (857)
T ss_pred hHHHHHHHHHHHHcCCCCCCCccEEEECCEEEEEecCCCCCcchHHHHHHHHHHHHHHHhCCcCCCcchhc-cccHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999888 55888999
Q ss_pred hhhhhchHHHHHHHHhhCCCCCCcEEEEcccccCcchhHHHHHHhhhhceEEEEecCCccccccCCcCCCCC
Q 003584 736 IGLAYHSEKLAVAFGLLTLPQGAPIRIFKNLRVCGDCHTAMKYISAVYLRHIILRDSNRFHHFKAGNCSCGD 807 (809)
Q Consensus 736 ~~~~~hse~la~~~~~~~~~~~~~~~i~kn~r~c~dch~~~k~~s~~~~r~i~~rd~~~~h~f~~g~csc~~ 807 (809)
..+++||||||+|||||+||||+||||+||||||+|||+++||||||++|||||||++|||||+||+|||||
T Consensus 786 ~~~~~hse~la~a~~l~~~~~~~~i~i~knlr~c~dch~~~k~~s~~~~r~i~~rd~~rfh~f~~g~csc~d 857 (857)
T PLN03077 786 DIFCGHSERLAIAFGLINTVPGMPIWVTKNLYMCENCHNTVKFISKIVRREISVRDTEQFHHFKDGECSCGD 857 (857)
T ss_pred HHHHhccHHHHHHHhhhcCCCCCeEEEeCCCEeCccHHHHHHHHHHHhCeEEEEecCCcceeCCCCcccCCC
Confidence 999999999999999999999999999999999999999999999999999999999999999999999998
No 2
>PLN03081 pentatricopeptide (PPR) repeat-containing protein; Provisional
Probab=100.00 E-value=3.4e-127 Score=1105.48 Aligned_cols=612 Identities=38% Similarity=0.663 Sum_probs=605.9
Q ss_pred CCcccHHHHHHHHhhCCChHHHHHHHHHHHHCC-CCCCcchHHHHHHHHhccCChHHHHHHHHHHHHhCCCCchhHHHHH
Q 003584 198 KNHVAWTTMITGYSQNGYGFKAIECFRDMRVEG-VESNQFTFPSILTACAAVSARDFGAQVHGCILSSGFEANVYVQSAL 276 (809)
Q Consensus 198 ~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g-~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~L 276 (809)
++..+|+.+|.+|.+.|++++|+++|+.|...+ +.||..||+.++.+|++.++++.|.++|..|.+.|+.||..++|.|
T Consensus 85 ~~~~~~~~~i~~l~~~g~~~~Al~~f~~m~~~~~~~~~~~t~~~ll~a~~~~~~~~~a~~l~~~m~~~g~~~~~~~~n~L 164 (697)
T PLN03081 85 KSGVSLCSQIEKLVACGRHREALELFEILEAGCPFTLPASTYDALVEACIALKSIRCVKAVYWHVESSGFEPDQYMMNRV 164 (697)
T ss_pred CCceeHHHHHHHHHcCCCHHHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHhCCCcchHHHHHH
Confidence 678899999999999999999999999998764 7899999999999999999999999999999999999999999999
Q ss_pred HHHHHhCCChHHHHHHHhccCCCCeeeHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCcccHHHHHHHhhcCCChHHHH
Q 003584 277 IDMYAKCGDLDSARRLLEYSEIDNEVSWNSMIVGFARQGFHKEALSLFKKMHARDIKIDDFTYPSVLNCFASNIDLNNAK 356 (809)
Q Consensus 277 i~~y~~~g~~~~A~~~f~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~ 356 (809)
+++|+++|++++|.++|++|+.||+++||+||.+|++.|++++|+++|++|.+.|+.||..||+.++.+|+..|..+.+.
T Consensus 165 i~~y~k~g~~~~A~~lf~~m~~~~~~t~n~li~~~~~~g~~~~A~~lf~~M~~~g~~p~~~t~~~ll~a~~~~~~~~~~~ 244 (697)
T PLN03081 165 LLMHVKCGMLIDARRLFDEMPERNLASWGTIIGGLVDAGNYREAFALFREMWEDGSDAEPRTFVVMLRASAGLGSARAGQ 244 (697)
T ss_pred HHHHhcCCCHHHHHHHHhcCCCCCeeeHHHHHHHHHHCcCHHHHHHHHHHHHHhCCCCChhhHHHHHHHHhcCCcHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHhccCCchHHHHHHHHHHHhcCCHHHHHHHHhhcCCCCHhHHHHHHHHHHhcCCHHHHHHHHHHHhhcCCccC
Q 003584 357 SVHSLIVKTGFEGYKFVNNALIDMYAKQGNLDCAFMVFNLMQDKDVISWTSLITGCAYHGSYEEALKYFSDMRISGICPD 436 (809)
Q Consensus 357 ~i~~~~~~~g~~~~~~~~~~li~~y~~~g~~~~A~~~f~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~ 436 (809)
++|..+.+.|+.+|..++|+|+++|+++|++++|.++|++|.++|+++||+||.+|++.|++++|+++|++|.+.|+.||
T Consensus 245 ~l~~~~~~~g~~~d~~~~n~Li~~y~k~g~~~~A~~vf~~m~~~~~vt~n~li~~y~~~g~~~eA~~lf~~M~~~g~~pd 324 (697)
T PLN03081 245 QLHCCVLKTGVVGDTFVSCALIDMYSKCGDIEDARCVFDGMPEKTTVAWNSMLAGYALHGYSEEALCLYYEMRDSGVSID 324 (697)
T ss_pred HHHHHHHHhCCCccceeHHHHHHHHHHCCCHHHHHHHHHhCCCCChhHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCC
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HhHHHHHHHHHhcccchhHHHHHHHHHHHhCCCCChhHHhHHHHHHHhcCCHHHHHHHHHhcCCCCeeechHHHHHHHhc
Q 003584 437 HVVVSSILSACAELTVLEFGQQVHAVFLKSGGCSSLSVDNSLVLVYAKCGCINDANRVFDSMHTRDVITWTALIMGCAQN 516 (809)
Q Consensus 437 ~~t~~~ll~a~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~y~k~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~ 516 (809)
..||++++.+|++.|.++.|.++|..+.+.|+.||..++|+|+++|+|+|++++|.++|++|.+||+++||+||.+|+++
T Consensus 325 ~~t~~~ll~a~~~~g~~~~a~~i~~~m~~~g~~~d~~~~~~Li~~y~k~G~~~~A~~vf~~m~~~d~~t~n~lI~~y~~~ 404 (697)
T PLN03081 325 QFTFSIMIRIFSRLALLEHAKQAHAGLIRTGFPLDIVANTALVDLYSKWGRMEDARNVFDRMPRKNLISWNALIAGYGNH 404 (697)
T ss_pred HHHHHHHHHHHHhccchHHHHHHHHHHHHhCCCCCeeehHHHHHHHHHCCCHHHHHHHHHhCCCCCeeeHHHHHHHHHHc
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHhHHhhCCCCChHHHHHHHHHHhhcCCHHHHHHH
Q 003584 517 GKGKEALQFYDQMLARGTKPDYITFVGLLFACSHAGLAENARWYFESMDKVYGIKPGPDHYACMIDLLGRSGKLIEAKAL 596 (809)
Q Consensus 517 g~~~~A~~l~~~m~~~g~~pd~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~~~~~~~li~~~~~~g~~~eA~~~ 596 (809)
|+.++|+++|++|.+.|+.||.+||+.++.+|++.|++++|.++|+.|.+.+|+.|+..+|++|+++|+++|++++|.++
T Consensus 405 G~~~~A~~lf~~M~~~g~~Pd~~T~~~ll~a~~~~g~~~~a~~~f~~m~~~~g~~p~~~~y~~li~~l~r~G~~~eA~~~ 484 (697)
T PLN03081 405 GRGTKAVEMFERMIAEGVAPNHVTFLAVLSACRYSGLSEQGWEIFQSMSENHRIKPRAMHYACMIELLGREGLLDEAYAM 484 (697)
T ss_pred CCHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHhcCCcHHHHHHHHHHHHHhcCCCCCccchHhHHHHHHhcCCHHHHHHH
Confidence 99999999999999999999999999999999999999999999999998889999999999999999999999999999
Q ss_pred HHhCcCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHhccCCCCCccHHhHhhhhhhcCChhHHHHHHHHHHhCCCccCCc
Q 003584 597 LDQMVGEPDATVWKALLSACRVHGDLELGERAANNLFELEPMNAMPYVQLSNMYSTAGKWEDAARVRKLMKSRGIRKEPG 676 (809)
Q Consensus 597 ~~~m~~~p~~~~~~~ll~a~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~~~~~ 676 (809)
+++|+.+|+..+|++|+.+|+.+|+++.|+.+++++++++|++..+|..|+++|++.|+|++|.++++.|+++|++|.||
T Consensus 485 ~~~~~~~p~~~~~~~Ll~a~~~~g~~~~a~~~~~~l~~~~p~~~~~y~~L~~~y~~~G~~~~A~~v~~~m~~~g~~k~~g 564 (697)
T PLN03081 485 IRRAPFKPTVNMWAALLTACRIHKNLELGRLAAEKLYGMGPEKLNNYVVLLNLYNSSGRQAEAAKVVETLKRKGLSMHPA 564 (697)
T ss_pred HHHCCCCCCHHHHHHHHHHHHHcCCcHHHHHHHHHHhCCCCCCCcchHHHHHHHHhCCCHHHHHHHHHHHHHcCCccCCC
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred eeEEEECCEEEEEEeCCCCCcchHHHHHHHHHHHHHHHHcCCccCCccccccccchhhhhhhhhchHHHHHHHHhhCCCC
Q 003584 677 CSWVETNSQVHIFISEDRGHPLRTDIYSKIDEIMLLIKEAGYVPDMNFALHNVEEEGKEIGLAYHSEKLAVAFGLLTLPQ 756 (809)
Q Consensus 677 ~s~~~~~~~~~~~~~~~~~~~~~~~i~~~l~~l~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~hse~la~~~~~~~~~~ 756 (809)
+|||++++.+|.|++||..||+..+||.+|+++..+|++.||.||+.+++||+++++|+..+.+||||||+|||||+|||
T Consensus 565 ~s~i~~~~~~~~f~~~d~~h~~~~~i~~~l~~l~~~~~~~gy~~~~~~~~~~~~~~~~~~~~~~hsekla~a~~l~~~~~ 644 (697)
T PLN03081 565 CTWIEVKKQDHSFFSGDRLHPQSREIYQKLDELMKEISEYGYVAEENELLPDVDEDEEKVSGRYHSEKLAIAFGLINTSE 644 (697)
T ss_pred eeEEEECCeEEEEccCCCCCccHHHHHHHHHHHHHHHHHcCCCCCcchhhccccHHHHHHHHHhccHHHHHHhhCccCCC
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCcEEEEcccccCcchhHHHHHHhhhhceEEEEecCCccccccCCcCCCCCCC
Q 003584 757 GAPIRIFKNLRVCGDCHTAMKYISAVYLRHIILRDSNRFHHFKAGNCSCGDYW 809 (809)
Q Consensus 757 ~~~~~i~kn~r~c~dch~~~k~~s~~~~r~i~~rd~~~~h~f~~g~csc~~~w 809 (809)
|+||||+||||||+|||+++||||+|+||||||||++|||||+||+|||||||
T Consensus 645 ~~~i~i~knlr~c~dch~~~k~~s~~~~r~i~~rd~~rfh~f~~g~csc~d~w 697 (697)
T PLN03081 645 WTPLQITQSHRICKDCHKVIKFIALVTKREIVVRDASRFHHFKLGKCSCGDYW 697 (697)
T ss_pred CCeEEEecCCEECCCchhhHHHHhhhcceEEEEecCCccccCCCCcccccccC
Confidence 99999999999999999999999999999999999999999999999999999
No 3
>PLN03077 Protein ECB2; Provisional
Probab=100.00 E-value=4.6e-85 Score=773.26 Aligned_cols=608 Identities=28% Similarity=0.442 Sum_probs=579.9
Q ss_pred CCCCcchHHHHHHHHHcCCCchhHHHHHHHHHHcCCCCCcccHHHHHHHhhcCCCchHHHHHHHHHHHhCCCCchHHHHH
Q 003584 94 PFKNFFTWSSLIYGYSNYGLDIEAFELFWQMQLEGYRPSQYTLDNVLRLCSLKGLLQRGEQFHGYAIKTCFDLNAFVVTG 173 (809)
Q Consensus 94 ~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~ 173 (809)
..++..++|.++.+|++.|++++|..+|++|.+.|+.|+..+|..++++|...+.+..|.++|+.+++.|..++..++|+
T Consensus 47 ~~~~~~~~n~~i~~l~~~g~~~~A~~l~~~m~~~g~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~n~ 126 (857)
T PLN03077 47 SSSSTHDSNSQLRALCSHGQLEQALKLLESMQELRVPVDEDAYVALFRLCEWKRAVEEGSRVCSRALSSHPSLGVRLGNA 126 (857)
T ss_pred cccchhhHHHHHHHHHhCCCHHHHHHHHHHHHhcCCCCChhHHHHHHHHHhhCCCHHHHHHHHHHHHHcCCCCCchHHHH
Confidence 35677889999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHhhhcCCChhHHHHHhhhCCCCCCcccHHHHHHHHhhCCChHHHHHHHHHHHHCCCCCCcchHHHHHHHHhccCChHH
Q 003584 174 LVDMYAKCKCIFEAEYLFKMFPDGKNHVAWTTMITGYSQNGYGFKAIECFRDMRVEGVESNQFTFPSILTACAAVSARDF 253 (809)
Q Consensus 174 li~~y~~~g~~~~A~~~f~~~~~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~ 253 (809)
|+++|+++|+++.|.++|++|++ ||+++||+||.+|++.|++++|+++|++|...|+.||.+||++++++|+..+++..
T Consensus 127 li~~~~~~g~~~~A~~~f~~m~~-~d~~~~n~li~~~~~~g~~~~A~~~f~~M~~~g~~Pd~~t~~~ll~~~~~~~~~~~ 205 (857)
T PLN03077 127 MLSMFVRFGELVHAWYVFGKMPE-RDLFSWNVLVGGYAKAGYFDEALCLYHRMLWAGVRPDVYTFPCVLRTCGGIPDLAR 205 (857)
T ss_pred HHHHHHhCCChHHHHHHHhcCCC-CCeeEHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCChhHHHHHHHHhCCccchhh
Confidence 99999999999999999999999 99999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHhCCCCchhHHHHHHHHHHhCCChHHHHHHHhccCCCCeeeHHHHHHHHHhcCChhHHHHHHHHHHHCCCC
Q 003584 254 GAQVHGCILSSGFEANVYVQSALIDMYAKCGDLDSARRLLEYSEIDNEVSWNSMIVGFARQGFHKEALSLFKKMHARDIK 333 (809)
Q Consensus 254 a~~~~~~~~~~g~~~~~~~~~~Li~~y~~~g~~~~A~~~f~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~ 333 (809)
++++|..+++.|+.||+.++|+|+++|+++|++++|.++|++|+.+|+++||+||.+|++.|++++|+++|++|.+.|+.
T Consensus 206 ~~~~~~~~~~~g~~~~~~~~n~Li~~y~k~g~~~~A~~lf~~m~~~d~~s~n~li~~~~~~g~~~eAl~lf~~M~~~g~~ 285 (857)
T PLN03077 206 GREVHAHVVRFGFELDVDVVNALITMYVKCGDVVSARLVFDRMPRRDCISWNAMISGYFENGECLEGLELFFTMRELSVD 285 (857)
T ss_pred HHHHHHHHHHcCCCcccchHhHHHHHHhcCCCHHHHHHHHhcCCCCCcchhHHHHHHHHhCCCHHHHHHHHHHHHHcCCC
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCcccHHHHHHHhhcCCChHHHHHHHHHHHHhccCCchHHHHHHHHHHHhcCCHHHHHHHHhhcCCCCHhHHHHHHHHHH
Q 003584 334 IDDFTYPSVLNCFASNIDLNNAKSVHSLIVKTGFEGYKFVNNALIDMYAKQGNLDCAFMVFNLMQDKDVISWTSLITGCA 413 (809)
Q Consensus 334 p~~~t~~~ll~~~~~~~~~~~a~~i~~~~~~~g~~~~~~~~~~li~~y~~~g~~~~A~~~f~~~~~~~~~~~~~li~~~~ 413 (809)
||..||+.++.+|++.|+++.|.++|..+.+.|+.||..+||+|+++|+++|++++|.++|++|.++|+++||+||.+|+
T Consensus 286 Pd~~ty~~ll~a~~~~g~~~~a~~l~~~~~~~g~~~d~~~~n~Li~~y~k~g~~~~A~~vf~~m~~~d~~s~n~li~~~~ 365 (857)
T PLN03077 286 PDLMTITSVISACELLGDERLGREMHGYVVKTGFAVDVSVCNSLIQMYLSLGSWGEAEKVFSRMETKDAVSWTAMISGYE 365 (857)
T ss_pred CChhHHHHHHHHHHhcCChHHHHHHHHHHHHhCCccchHHHHHHHHHHHhcCCHHHHHHHHhhCCCCCeeeHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hcCCHHHHHHHHHHHhhcCCccCHhHHHHHHHHHhcccchhHHHHHHHHHHHhCCCCChhHHhHHHHHHHhcCCHHHHHH
Q 003584 414 YHGSYEEALKYFSDMRISGICPDHVVVSSILSACAELTVLEFGQQVHAVFLKSGGCSSLSVDNSLVLVYAKCGCINDANR 493 (809)
Q Consensus 414 ~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~y~k~g~~~~A~~ 493 (809)
+.|++++|+++|++|.+.|+.||..||++++.+|++.|+++.|.++|+.+.+.|+.++..++|+|+++|+++|++++|.+
T Consensus 366 ~~g~~~~A~~lf~~M~~~g~~Pd~~t~~~ll~a~~~~g~~~~a~~l~~~~~~~g~~~~~~~~n~Li~~y~k~g~~~~A~~ 445 (857)
T PLN03077 366 KNGLPDKALETYALMEQDNVSPDEITIASVLSACACLGDLDVGVKLHELAERKGLISYVVVANALIEMYSKCKCIDKALE 445 (857)
T ss_pred hCCCHHHHHHHHHHHHHhCCCCCceeHHHHHHHHhccchHHHHHHHHHHHHHhCCCcchHHHHHHHHHHHHcCCHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHhcCCCCeeechHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHhHHhhCCCCC
Q 003584 494 VFDSMHTRDVITWTALIMGCAQNGKGKEALQFYDQMLARGTKPDYITFVGLLFACSHAGLAENARWYFESMDKVYGIKPG 573 (809)
Q Consensus 494 ~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~pd~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~ 573 (809)
+|++|.++|+++||+||.+|+++|+.++|+.+|++|.. +++||..||..++.+|++.|.++++.+++..+.+. |+.++
T Consensus 446 vf~~m~~~d~vs~~~mi~~~~~~g~~~eA~~lf~~m~~-~~~pd~~t~~~lL~a~~~~g~l~~~~~i~~~~~~~-g~~~~ 523 (857)
T PLN03077 446 VFHNIPEKDVISWTSIIAGLRLNNRCFEALIFFRQMLL-TLKPNSVTLIAALSACARIGALMCGKEIHAHVLRT-GIGFD 523 (857)
T ss_pred HHHhCCCCCeeeHHHHHHHHHHCCCHHHHHHHHHHHHh-CCCCCHhHHHHHHHHHhhhchHHHhHHHHHHHHHh-CCCcc
Confidence 99999999999999999999999999999999999986 59999999999999999999999999999999877 99999
Q ss_pred hHHHHHHHHHHhhcCCHHHHHHHHHhCcCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHhccC-CCCCccHHhHhhhhhh
Q 003584 574 PDHYACMIDLLGRSGKLIEAKALLDQMVGEPDATVWKALLSACRVHGDLELGERAANNLFELE-PMNAMPYVQLSNMYST 652 (809)
Q Consensus 574 ~~~~~~li~~~~~~g~~~eA~~~~~~m~~~p~~~~~~~ll~a~~~~g~~~~A~~~~~~~~~~~-p~~~~~~~~l~~~~~~ 652 (809)
..++++|+++|+++|++++|.++|+++ +||..+|++|+.+|.++|+.++|+++|++|.+.+ .+|..+|..++.+|.+
T Consensus 524 ~~~~naLi~~y~k~G~~~~A~~~f~~~--~~d~~s~n~lI~~~~~~G~~~~A~~lf~~M~~~g~~Pd~~T~~~ll~a~~~ 601 (857)
T PLN03077 524 GFLPNALLDLYVRCGRMNYAWNQFNSH--EKDVVSWNILLTGYVAHGKGSMAVELFNRMVESGVNPDEVTFISLLCACSR 601 (857)
T ss_pred ceechHHHHHHHHcCCHHHHHHHHHhc--CCChhhHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCcccHHHHHHHHhh
Confidence 999999999999999999999999999 7999999999999999999999999999998753 2367889999999999
Q ss_pred cCChhHHHHHHHHHH-hCCCccCCceeEEEECCEEEEEEeCCCCCcchHHHH---HHHHHHHHHHHHcCCccCCcc
Q 003584 653 AGKWEDAARVRKLMK-SRGIRKEPGCSWVETNSQVHIFISEDRGHPLRTDIY---SKIDEIMLLIKEAGYVPDMNF 724 (809)
Q Consensus 653 ~g~~~~A~~~~~~m~-~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~i~---~~l~~l~~~~~~~g~~~~~~~ 724 (809)
.|++++|.++|+.|+ +.|+.|+... .....+.+ +.++++.+.+++++..||...
T Consensus 602 ~g~v~ea~~~f~~M~~~~gi~P~~~~------------------y~~lv~~l~r~G~~~eA~~~~~~m~~~pd~~~ 659 (857)
T PLN03077 602 SGMVTQGLEYFHSMEEKYSITPNLKH------------------YACVVDLLGRAGKLTEAYNFINKMPITPDPAV 659 (857)
T ss_pred cChHHHHHHHHHHHHHHhCCCCchHH------------------HHHHHHHHHhCCCHHHHHHHHHHCCCCCCHHH
Confidence 999999999999999 6787654311 01122222 345678888888899998753
No 4
>PLN03081 pentatricopeptide (PPR) repeat-containing protein; Provisional
Probab=100.00 E-value=3.2e-70 Score=631.41 Aligned_cols=474 Identities=27% Similarity=0.456 Sum_probs=455.4
Q ss_pred CCCcchHHHHHHHHHcCCCchhHHHHHHHHHHcC-CCCCcccHHHHHHHhhcCCCchHHHHHHHHHHHhCCCCchHHHHH
Q 003584 95 FKNFFTWSSLIYGYSNYGLDIEAFELFWQMQLEG-YRPSQYTLDNVLRLCSLKGLLQRGEQFHGYAIKTCFDLNAFVVTG 173 (809)
Q Consensus 95 ~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g-~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~ 173 (809)
.++..+|+.+|.+|.+.|++++|+++|+.|...+ +.||..||+.++.+|++.++++.+.++|..+.+.|+.||..++|.
T Consensus 84 ~~~~~~~~~~i~~l~~~g~~~~Al~~f~~m~~~~~~~~~~~t~~~ll~a~~~~~~~~~a~~l~~~m~~~g~~~~~~~~n~ 163 (697)
T PLN03081 84 RKSGVSLCSQIEKLVACGRHREALELFEILEAGCPFTLPASTYDALVEACIALKSIRCVKAVYWHVESSGFEPDQYMMNR 163 (697)
T ss_pred CCCceeHHHHHHHHHcCCCHHHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHhCCCcchHHHHH
Confidence 3567899999999999999999999999999864 789999999999999999999999999999999999999999999
Q ss_pred HHHhhhcCCChhHHHHHhhhCCCCCCcccHHHHHHHHhhCCChHHHHHHHHHHHHCCCCCCcchHHHHHHHHhccCChHH
Q 003584 174 LVDMYAKCKCIFEAEYLFKMFPDGKNHVAWTTMITGYSQNGYGFKAIECFRDMRVEGVESNQFTFPSILTACAAVSARDF 253 (809)
Q Consensus 174 li~~y~~~g~~~~A~~~f~~~~~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~ 253 (809)
|+++|+++|++++|.++|++|+. ||+++||++|.+|++.|++++|+++|++|.+.|+.||..||+.++.+|+..|..+.
T Consensus 164 Li~~y~k~g~~~~A~~lf~~m~~-~~~~t~n~li~~~~~~g~~~~A~~lf~~M~~~g~~p~~~t~~~ll~a~~~~~~~~~ 242 (697)
T PLN03081 164 VLLMHVKCGMLIDARRLFDEMPE-RNLASWGTIIGGLVDAGNYREAFALFREMWEDGSDAEPRTFVVMLRASAGLGSARA 242 (697)
T ss_pred HHHHHhcCCCHHHHHHHHhcCCC-CCeeeHHHHHHHHHHCcCHHHHHHHHHHHHHhCCCCChhhHHHHHHHHhcCCcHHH
Confidence 99999999999999999999999 99999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHhCCCCchhHHHHHHHHHHhCCChHHHHHHHhccCCCCeeeHHHHHHHHHhcCChhHHHHHHHHHHHCCCC
Q 003584 254 GAQVHGCILSSGFEANVYVQSALIDMYAKCGDLDSARRLLEYSEIDNEVSWNSMIVGFARQGFHKEALSLFKKMHARDIK 333 (809)
Q Consensus 254 a~~~~~~~~~~g~~~~~~~~~~Li~~y~~~g~~~~A~~~f~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~ 333 (809)
++++|..+.+.|+.||..++|+|+++|+++|++++|.++|++|+.+|+++||+||.+|++.|+.++|+++|++|.+.|+.
T Consensus 243 ~~~l~~~~~~~g~~~d~~~~n~Li~~y~k~g~~~~A~~vf~~m~~~~~vt~n~li~~y~~~g~~~eA~~lf~~M~~~g~~ 322 (697)
T PLN03081 243 GQQLHCCVLKTGVVGDTFVSCALIDMYSKCGDIEDARCVFDGMPEKTTVAWNSMLAGYALHGYSEEALCLYYEMRDSGVS 322 (697)
T ss_pred HHHHHHHHHHhCCCccceeHHHHHHHHHHCCCHHHHHHHHHhCCCCChhHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCC
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCcccHHHHHHHhhcCCChHHHHHHHHHHHHhccCCchHHHHHHHHHHHhcCCHHHHHHHHhhcCCCCHhHHHHHHHHHH
Q 003584 334 IDDFTYPSVLNCFASNIDLNNAKSVHSLIVKTGFEGYKFVNNALIDMYAKQGNLDCAFMVFNLMQDKDVISWTSLITGCA 413 (809)
Q Consensus 334 p~~~t~~~ll~~~~~~~~~~~a~~i~~~~~~~g~~~~~~~~~~li~~y~~~g~~~~A~~~f~~~~~~~~~~~~~li~~~~ 413 (809)
||..||+.++.+|++.|+++.|.++|+.+.+.|+.||..++|+|+++|+++|++++|.++|++|.++|+++||+||.+|+
T Consensus 323 pd~~t~~~ll~a~~~~g~~~~a~~i~~~m~~~g~~~d~~~~~~Li~~y~k~G~~~~A~~vf~~m~~~d~~t~n~lI~~y~ 402 (697)
T PLN03081 323 IDQFTFSIMIRIFSRLALLEHAKQAHAGLIRTGFPLDIVANTALVDLYSKWGRMEDARNVFDRMPRKNLISWNALIAGYG 402 (697)
T ss_pred CCHHHHHHHHHHHHhccchHHHHHHHHHHHHhCCCCCeeehHHHHHHHHHCCCHHHHHHHHHhCCCCCeeeHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hcCCHHHHHHHHHHHhhcCCccCHhHHHHHHHHHhcccchhHHHHHHHHHHH-hCCCCChhHHhHHHHHHHhcCCHHHHH
Q 003584 414 YHGSYEEALKYFSDMRISGICPDHVVVSSILSACAELTVLEFGQQVHAVFLK-SGGCSSLSVDNSLVLVYAKCGCINDAN 492 (809)
Q Consensus 414 ~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~~~~~~a~~~~~~~~~-~g~~~~~~~~~~li~~y~k~g~~~~A~ 492 (809)
+.|+.++|+++|++|.+.|+.||..||+++|.+|++.|.+++|.+++..|.+ .|+.|+..+|++++++|++.|++++|.
T Consensus 403 ~~G~~~~A~~lf~~M~~~g~~Pd~~T~~~ll~a~~~~g~~~~a~~~f~~m~~~~g~~p~~~~y~~li~~l~r~G~~~eA~ 482 (697)
T PLN03081 403 NHGRGTKAVEMFERMIAEGVAPNHVTFLAVLSACRYSGLSEQGWEIFQSMSENHRIKPRAMHYACMIELLGREGLLDEAY 482 (697)
T ss_pred HcCCHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHhcCCcHHHHHHHHHHHHHhcCCCCCccchHhHHHHHHhcCCHHHHH
Confidence 9999999999999999999999999999999999999999999999999976 699999999999999999999999999
Q ss_pred HHHHhcC-CCCeeechHHHHHHHhcCChHHHHHHHHHHHHCCCCCC-HHHHHHHHHHHHccCCHHHHHHHHHHhHHhhCC
Q 003584 493 RVFDSMH-TRDVITWTALIMGCAQNGKGKEALQFYDQMLARGTKPD-YITFVGLLFACSHAGLAENARWYFESMDKVYGI 570 (809)
Q Consensus 493 ~~~~~~~-~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~pd-~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~ 570 (809)
++|++|+ +|+..+|++|+.+|..+|+.+.|..+++++.+ +.|+ ..+|..+++.|++.|++++|.++++.|.+. |+
T Consensus 483 ~~~~~~~~~p~~~~~~~Ll~a~~~~g~~~~a~~~~~~l~~--~~p~~~~~y~~L~~~y~~~G~~~~A~~v~~~m~~~-g~ 559 (697)
T PLN03081 483 AMIRRAPFKPTVNMWAALLTACRIHKNLELGRLAAEKLYG--MGPEKLNNYVVLLNLYNSSGRQAEAAKVVETLKRK-GL 559 (697)
T ss_pred HHHHHCCCCCCHHHHHHHHHHHHHcCCcHHHHHHHHHHhC--CCCCCCcchHHHHHHHHhCCCHHHHHHHHHHHHHc-CC
Confidence 9999997 78889999999999999999999999998865 5665 458888888999999999999999888776 66
Q ss_pred CC
Q 003584 571 KP 572 (809)
Q Consensus 571 ~p 572 (809)
.+
T Consensus 560 ~k 561 (697)
T PLN03081 560 SM 561 (697)
T ss_pred cc
Confidence 53
No 5
>PLN03218 maturation of RBCL 1; Provisional
Probab=100.00 E-value=2.9e-69 Score=623.84 Aligned_cols=526 Identities=17% Similarity=0.232 Sum_probs=480.7
Q ss_pred HHHhcCC--CCcchHHHHHHHHHccCChhHHHHHhhhCCCCCcch-----HHHHHHHHHcCCCchhHHHHHHHHHHcCCC
Q 003584 58 LFEKMSD--RDGFTWNTMIAAYANSGRLREAKKLFNETPFKNFFT-----WSSLIYGYSNYGLDIEAFELFWQMQLEGYR 130 (809)
Q Consensus 58 ~~~~~~~--~~~~~~~~li~~~~~~g~~~~A~~~f~~~~~~~~~~-----~~~li~~~~~~g~~~~A~~~~~~m~~~g~~ 130 (809)
..+.+.. ++...|..+++.|+++|++++|+++|++|+.++... ++.++.+|.+.|..++|+.+|+.|..
T Consensus 359 ~~~~~~~~~~~~~~~~~~y~~l~r~G~l~eAl~Lfd~M~~~gvv~~~~v~~~~li~~~~~~g~~~eAl~lf~~M~~---- 434 (1060)
T PLN03218 359 AYNGGVSGKRKSPEYIDAYNRLLRDGRIKDCIDLLEDMEKRGLLDMDKIYHAKFFKACKKQRAVKEAFRFAKLIRN---- 434 (1060)
T ss_pred HhccccCCCCCchHHHHHHHHHHHCcCHHHHHHHHHHHHhCCCCCchHHHHHHHHHHHHHCCCHHHHHHHHHHcCC----
Confidence 3444443 567789999999999999999999999999877654 45667789999999999999999975
Q ss_pred CCcccHHHHHHHhhcCCCchHHHHHHHHHHHhCCCCchHHHHHHHHhhhcCCChhHHHHHhhhCCC---CCCcccHHHHH
Q 003584 131 PSQYTLDNVLRLCSLKGLLQRGEQFHGYAIKTCFDLNAFVVTGLVDMYAKCKCIFEAEYLFKMFPD---GKNHVAWTTMI 207 (809)
Q Consensus 131 p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~y~~~g~~~~A~~~f~~~~~---~~~~~~~~~li 207 (809)
||..||+.+|++|++.|+++.|.++++.|.+.|+.||..+|+.||.+|+++|++++|.++|++|.. .||.++||+||
T Consensus 435 pd~~Tyn~LL~a~~k~g~~e~A~~lf~~M~~~Gl~pD~~tynsLI~~y~k~G~vd~A~~vf~eM~~~Gv~PdvvTynaLI 514 (1060)
T PLN03218 435 PTLSTFNMLMSVCASSQDIDGALRVLRLVQEAGLKADCKLYTTLISTCAKSGKVDAMFEVFHEMVNAGVEANVHTFGALI 514 (1060)
T ss_pred CCHHHHHHHHHHHHhCcCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhCcCHHHHHHHHHHHHHcCCCCCHHHHHHHH
Confidence 999999999999999999999999999999999999999999999999999999999999999984 28999999999
Q ss_pred HHHhhCCChHHHHHHHHHHHHCCCCCCcchHHHHHHHHhccCChHHHHHHHHHHHH--hCCCCchhHHHHHHHHHHhCCC
Q 003584 208 TGYSQNGYGFKAIECFRDMRVEGVESNQFTFPSILTACAAVSARDFGAQVHGCILS--SGFEANVYVQSALIDMYAKCGD 285 (809)
Q Consensus 208 ~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~--~g~~~~~~~~~~Li~~y~~~g~ 285 (809)
.+|++.|++++|+++|++|.+.|+.||..||+.+|.+|++.|++++|.++|++|.+ .|+.||..+|++||++|+++|+
T Consensus 515 ~gy~k~G~~eeAl~lf~~M~~~Gv~PD~vTYnsLI~a~~k~G~~deA~~lf~eM~~~~~gi~PD~vTynaLI~ay~k~G~ 594 (1060)
T PLN03218 515 DGCARAGQVAKAFGAYGIMRSKNVKPDRVVFNALISACGQSGAVDRAFDVLAEMKAETHPIDPDHITVGALMKACANAGQ 594 (1060)
T ss_pred HHHHHCcCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhcCCCCCcHHHHHHHHHHHHHCCC
Confidence 99999999999999999999999999999999999999999999999999999987 6789999999999999999999
Q ss_pred hHHHHHHHhccCC----CCeeeHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCcccHHHHHHHhhcCCChHHHHHHHHH
Q 003584 286 LDSARRLLEYSEI----DNEVSWNSMIVGFARQGFHKEALSLFKKMHARDIKIDDFTYPSVLNCFASNIDLNNAKSVHSL 361 (809)
Q Consensus 286 ~~~A~~~f~~~~~----~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~i~~~ 361 (809)
+++|.++|+.|.+ |+..+||++|.+|++.|++++|+++|++|.+.|+.||..||+.++.+|++.|++++|.++++.
T Consensus 595 ldeA~elf~~M~e~gi~p~~~tynsLI~ay~k~G~~deAl~lf~eM~~~Gv~PD~~TynsLI~a~~k~G~~eeA~~l~~e 674 (1060)
T PLN03218 595 VDRAKEVYQMIHEYNIKGTPEVYTIAVNSCSQKGDWDFALSIYDDMKKKGVKPDEVFFSALVDVAGHAGDLDKAFEILQD 674 (1060)
T ss_pred HHHHHHHHHHHHHcCCCCChHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHH
Confidence 9999999999874 567999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHhccCCchHHHHHHHHHHHhcCCHHHHHHHHhhcC----CCCHhHHHHHHHHHHhcCCHHHHHHHHHHHhhcCCccCH
Q 003584 362 IVKTGFEGYKFVNNALIDMYAKQGNLDCAFMVFNLMQ----DKDVISWTSLITGCAYHGSYEEALKYFSDMRISGICPDH 437 (809)
Q Consensus 362 ~~~~g~~~~~~~~~~li~~y~~~g~~~~A~~~f~~~~----~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~ 437 (809)
|.+.|+.||..+|++||.+|+++|++++|.++|++|. .||+++||+||.+|++.|++++|+++|++|...|+.||.
T Consensus 675 M~k~G~~pd~~tynsLI~ay~k~G~~eeA~~lf~eM~~~g~~PdvvtyN~LI~gy~k~G~~eeAlelf~eM~~~Gi~Pd~ 754 (1060)
T PLN03218 675 ARKQGIKLGTVSYSSLMGACSNAKNWKKALELYEDIKSIKLRPTVSTMNALITALCEGNQLPKALEVLSEMKRLGLCPNT 754 (1060)
T ss_pred HHHcCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCCCH
Confidence 9999999999999999999999999999999999995 589999999999999999999999999999999999999
Q ss_pred hHHHHHHHHHhcccchhHHHHHHHHHHHhCCCCChhHHhHHHHHH----HhcCCHHHHHHHHHhcCCCCeeechHHHHHH
Q 003584 438 VVVSSILSACAELTVLEFGQQVHAVFLKSGGCSSLSVDNSLVLVY----AKCGCINDANRVFDSMHTRDVITWTALIMGC 513 (809)
Q Consensus 438 ~t~~~ll~a~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~y----~k~g~~~~A~~~~~~~~~~~~~~~~~li~~~ 513 (809)
.||++++.+|++.|+++.|.++|..|.+.|+.||..+|++|+.++ .+++...++...|+.+...+...|+
T Consensus 755 ~Ty~sLL~a~~k~G~le~A~~l~~~M~k~Gi~pd~~tynsLIglc~~~y~ka~~l~~~v~~f~~g~~~~~n~w~------ 828 (1060)
T PLN03218 755 ITYSILLVASERKDDADVGLDLLSQAKEDGIKPNLVMCRCITGLCLRRFEKACALGEPVVSFDSGRPQIENKWT------ 828 (1060)
T ss_pred HHHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHHHHHHhhhhhhhhhhhccccccccchH------
Confidence 999999999999999999999999999999999999999999874 3444444444445443333444444
Q ss_pred HhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHhHHhhCCCCChHHHHHHHHHHhhcCCHHHH
Q 003584 514 AQNGKGKEALQFYDQMLARGTKPDYITFVGLLFACSHAGLAENARWYFESMDKVYGIKPGPDHYACMIDLLGRSGKLIEA 593 (809)
Q Consensus 514 ~~~g~~~~A~~l~~~m~~~g~~pd~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~~~~~~~li~~~~~~g~~~eA 593 (809)
++|+.+|++|++.|+.||..||+.++.+++..+..+.+..+++.|... +..|+..+|++||+.+++. .++|
T Consensus 829 ------~~Al~lf~eM~~~Gi~Pd~~T~~~vL~cl~~~~~~~~~~~m~~~m~~~-~~~~~~~~y~~Li~g~~~~--~~~A 899 (1060)
T PLN03218 829 ------SWALMVYRETISAGTLPTMEVLSQVLGCLQLPHDATLRNRLIENLGIS-ADSQKQSNLSTLVDGFGEY--DPRA 899 (1060)
T ss_pred ------HHHHHHHHHHHHCCCCCCHHHHHHHHHHhcccccHHHHHHHHHHhccC-CCCcchhhhHHHHHhhccC--hHHH
Confidence 569999999999999999999999998888888888888888877655 7778889999999988432 4689
Q ss_pred HHHHHhCcC
Q 003584 594 KALLDQMVG 602 (809)
Q Consensus 594 ~~~~~~m~~ 602 (809)
..++++|..
T Consensus 900 ~~l~~em~~ 908 (1060)
T PLN03218 900 FSLLEEAAS 908 (1060)
T ss_pred HHHHHHHHH
Confidence 999999875
No 6
>PLN03218 maturation of RBCL 1; Provisional
Probab=100.00 E-value=8e-66 Score=595.24 Aligned_cols=504 Identities=18% Similarity=0.211 Sum_probs=466.8
Q ss_pred CCchHHHHHHHHhhhcCCChhHHHHHhhhCCCCCCccc-----HHHHHHHHhhCCChHHHHHHHHHHHHCCCCCCcchHH
Q 003584 165 DLNAFVVTGLVDMYAKCKCIFEAEYLFKMFPDGKNHVA-----WTTMITGYSQNGYGFKAIECFRDMRVEGVESNQFTFP 239 (809)
Q Consensus 165 ~~~~~~~~~li~~y~~~g~~~~A~~~f~~~~~~~~~~~-----~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~ 239 (809)
.++...+..++..++++|++++|.++|+.|+. ++... ++.++.+|.+.|..++|+++|+.|.. ||..||+
T Consensus 367 ~~~~~~~~~~y~~l~r~G~l~eAl~Lfd~M~~-~gvv~~~~v~~~~li~~~~~~g~~~eAl~lf~~M~~----pd~~Tyn 441 (1060)
T PLN03218 367 KRKSPEYIDAYNRLLRDGRIKDCIDLLEDMEK-RGLLDMDKIYHAKFFKACKKQRAVKEAFRFAKLIRN----PTLSTFN 441 (1060)
T ss_pred CCCchHHHHHHHHHHHCcCHHHHHHHHHHHHh-CCCCCchHHHHHHHHHHHHHCCCHHHHHHHHHHcCC----CCHHHHH
Confidence 46778899999999999999999999999988 55554 55667789999999999999999974 9999999
Q ss_pred HHHHHHhccCChHHHHHHHHHHHHhCCCCchhHHHHHHHHHHhCCChHHHHHHHhccC----CCCeeeHHHHHHHHHhcC
Q 003584 240 SILTACAAVSARDFGAQVHGCILSSGFEANVYVQSALIDMYAKCGDLDSARRLLEYSE----IDNEVSWNSMIVGFARQG 315 (809)
Q Consensus 240 ~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~Li~~y~~~g~~~~A~~~f~~~~----~~~~~~~~~li~~~~~~g 315 (809)
.+|.+|++.|+++.|.++|+.|.+.|+.||..+|++||.+|+++|++++|.++|++|. .||.++||+||.+|++.|
T Consensus 442 ~LL~a~~k~g~~e~A~~lf~~M~~~Gl~pD~~tynsLI~~y~k~G~vd~A~~vf~eM~~~Gv~PdvvTynaLI~gy~k~G 521 (1060)
T PLN03218 442 MLMSVCASSQDIDGALRVLRLVQEAGLKADCKLYTTLISTCAKSGKVDAMFEVFHEMVNAGVEANVHTFGALIDGCARAG 521 (1060)
T ss_pred HHHHHHHhCcCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhCcCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHCc
Confidence 9999999999999999999999999999999999999999999999999999999998 589999999999999999
Q ss_pred ChhHHHHHHHHHHHCCCCCCcccHHHHHHHhhcCCChHHHHHHHHHHHH--hccCCchHHHHHHHHHHHhcCCHHHHHHH
Q 003584 316 FHKEALSLFKKMHARDIKIDDFTYPSVLNCFASNIDLNNAKSVHSLIVK--TGFEGYKFVNNALIDMYAKQGNLDCAFMV 393 (809)
Q Consensus 316 ~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~i~~~~~~--~g~~~~~~~~~~li~~y~~~g~~~~A~~~ 393 (809)
++++|+++|++|.+.|+.||..||+.++.+|++.|++++|.++++.|.+ .|+.||..+|++|+.+|+++|++++|.++
T Consensus 522 ~~eeAl~lf~~M~~~Gv~PD~vTYnsLI~a~~k~G~~deA~~lf~eM~~~~~gi~PD~vTynaLI~ay~k~G~ldeA~el 601 (1060)
T PLN03218 522 QVAKAFGAYGIMRSKNVKPDRVVFNALISACGQSGAVDRAFDVLAEMKAETHPIDPDHITVGALMKACANAGQVDRAKEV 601 (1060)
T ss_pred CHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhcCCCCCcHHHHHHHHHHHHHCCCHHHHHHH
Confidence 9999999999999999999999999999999999999999999999987 67899999999999999999999999999
Q ss_pred HhhcCC----CCHhHHHHHHHHHHhcCCHHHHHHHHHHHhhcCCccCHhHHHHHHHHHhcccchhHHHHHHHHHHHhCCC
Q 003584 394 FNLMQD----KDVISWTSLITGCAYHGSYEEALKYFSDMRISGICPDHVVVSSILSACAELTVLEFGQQVHAVFLKSGGC 469 (809)
Q Consensus 394 f~~~~~----~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~~~~~~a~~~~~~~~~~g~~ 469 (809)
|+.|.+ ++..+||++|.+|++.|++++|+++|++|.+.|+.||..||++++.+|++.|++++|.+++..|.+.|+.
T Consensus 602 f~~M~e~gi~p~~~tynsLI~ay~k~G~~deAl~lf~eM~~~Gv~PD~~TynsLI~a~~k~G~~eeA~~l~~eM~k~G~~ 681 (1060)
T PLN03218 602 YQMIHEYNIKGTPEVYTIAVNSCSQKGDWDFALSIYDDMKKKGVKPDEVFFSALVDVAGHAGDLDKAFEILQDARKQGIK 681 (1060)
T ss_pred HHHHHHcCCCCChHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCC
Confidence 999986 5779999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CChhHHhHHHHHHHhcCCHHHHHHHHHhcC----CCCeeechHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHH
Q 003584 470 SSLSVDNSLVLVYAKCGCINDANRVFDSMH----TRDVITWTALIMGCAQNGKGKEALQFYDQMLARGTKPDYITFVGLL 545 (809)
Q Consensus 470 ~~~~~~~~li~~y~k~g~~~~A~~~~~~~~----~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~pd~~t~~~ll 545 (809)
|+..+|++||++|+++|++++|.++|++|. .||..+||+||.+|++.|++++|+++|++|...|+.||..||+.++
T Consensus 682 pd~~tynsLI~ay~k~G~~eeA~~lf~eM~~~g~~PdvvtyN~LI~gy~k~G~~eeAlelf~eM~~~Gi~Pd~~Ty~sLL 761 (1060)
T PLN03218 682 LGTVSYSSLMGACSNAKNWKKALELYEDIKSIKLRPTVSTMNALITALCEGNQLPKALEVLSEMKRLGLCPNTITYSILL 761 (1060)
T ss_pred CCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCCCHHHHHHHH
Confidence 999999999999999999999999999995 6899999999999999999999999999999999999999999999
Q ss_pred HHHHccCCHHHHHHHHHHhHHhhCCCCChHHHHHHHHHHh----hcC-------------------CHHHHHHHHHhCcC
Q 003584 546 FACSHAGLAENARWYFESMDKVYGIKPGPDHYACMIDLLG----RSG-------------------KLIEAKALLDQMVG 602 (809)
Q Consensus 546 ~a~~~~g~~~~a~~~~~~m~~~~~~~p~~~~~~~li~~~~----~~g-------------------~~~eA~~~~~~m~~ 602 (809)
.+|++.|++++|.++|+.|.+. |+.||..+|++|++++. +++ ..++|..+|++|..
T Consensus 762 ~a~~k~G~le~A~~l~~~M~k~-Gi~pd~~tynsLIglc~~~y~ka~~l~~~v~~f~~g~~~~~n~w~~~Al~lf~eM~~ 840 (1060)
T PLN03218 762 VASERKDDADVGLDLLSQAKED-GIKPNLVMCRCITGLCLRRFEKACALGEPVVSFDSGRPQIENKWTSWALMVYRETIS 840 (1060)
T ss_pred HHHHHCCCHHHHHHHHHHHHHc-CCCCCHHHHHHHHHHHHHHHHHHhhhhhhhhhhhccccccccchHHHHHHHHHHHHH
Confidence 9999999999999999999877 99999999999998743 232 24679999999986
Q ss_pred ---CCCHHHHHHHHHHHHhcCChhHHHHHHHHHhc-cCCCCCccHHhHhhhhhhcCChhHHHHHHHHHHhCCCccCCc
Q 003584 603 ---EPDATVWKALLSACRVHGDLELGERAANNLFE-LEPMNAMPYVQLSNMYSTAGKWEDAARVRKLMKSRGIRKEPG 676 (809)
Q Consensus 603 ---~p~~~~~~~ll~a~~~~g~~~~A~~~~~~~~~-~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~~~~~ 676 (809)
.||..+|++++.++...+..+.+..+++.+.. -.+.+..+|..|++.+.+. .++|..+++.|...|+.|...
T Consensus 841 ~Gi~Pd~~T~~~vL~cl~~~~~~~~~~~m~~~m~~~~~~~~~~~y~~Li~g~~~~--~~~A~~l~~em~~~Gi~p~~~ 916 (1060)
T PLN03218 841 AGTLPTMEVLSQVLGCLQLPHDATLRNRLIENLGISADSQKQSNLSTLVDGFGEY--DPRAFSLLEEAASLGVVPSVS 916 (1060)
T ss_pred CCCCCCHHHHHHHHHHhcccccHHHHHHHHHHhccCCCCcchhhhHHHHHhhccC--hHHHHHHHHHHHHcCCCCCcc
Confidence 59999999999888888888988888877643 3466788999999988432 368999999999999987653
No 7
>TIGR02917 PEP_TPR_lipo putative PEP-CTERM system TPR-repeat lipoprotein. This protein family occurs in strictly within a subset of Gram-negative bacterial species with the proposed PEP-CTERM/exosortase system, analogous to the LPXTG/sortase system common in Gram-positive bacteria. This protein occurs in a species if and only if a transmembrane histidine kinase (TIGR02916) and a DNA-binding response regulator (TIGR02915) also occur. The present of tetratricopeptide repeats (TPR) suggests protein-protein interaction, possibly for the regulation of PEP-CTERM protein expression, since many PEP-CTERM proteins in these genomes are preceded by a proposed DNA binding site for the response regulator.
Probab=100.00 E-value=6.3e-35 Score=353.94 Aligned_cols=638 Identities=11% Similarity=0.003 Sum_probs=309.2
Q ss_pred cccCcccccccccCCCCCcchHHHHHHHHhcCCChHHHHHHHHhcCCC---CcchHHHHHHHHHccCChhHHHHHhhhCC
Q 003584 18 KIIGPARYTHNVGNSVKPASDLNRALVDFSNSGEIDEAGQLFEKMSDR---DGFTWNTMIAAYANSGRLREAKKLFNETP 94 (809)
Q Consensus 18 ~~~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~---~~~~~~~li~~~~~~g~~~~A~~~f~~~~ 94 (809)
...+...|...+...+.+...+..+...+...|++++|...++.+.+. +..........+...|++++|...|+++.
T Consensus 209 ~~~A~~~~~~a~~~~p~~~~~~~~~~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~l 288 (899)
T TIGR02917 209 IELALAAYRKAIALRPNNPAVLLALATILIEAGEFEEAEKHADALLKKAPNSPLAHYLKALVDFQKKNYEDARETLQDAL 288 (899)
T ss_pred HHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCchHHHHHHHHHHHhcCHHHHHHHHHHHH
Confidence 333444455555544444455555666666666666666666555431 11222222223344555555555555443
Q ss_pred CCC---cchHHHHHHHHHcCCCchhHHHHHHHHHHcCCCCCcccHHHHHHHhhcCCCchHHHHHHHHHHHhCCCCchHHH
Q 003584 95 FKN---FFTWSSLIYGYSNYGLDIEAFELFWQMQLEGYRPSQYTLDNVLRLCSLKGLLQRGEQFHGYAIKTCFDLNAFVV 171 (809)
Q Consensus 95 ~~~---~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~ 171 (809)
+.+ ...+..+...+...|++++|...|++..+.. +.+...+..+...+...|+++.|...+..+++.. +.+...+
T Consensus 289 ~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~~~~~~-p~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~-~~~~~~~ 366 (899)
T TIGR02917 289 KSAPEYLPALLLAGASEYQLGNLEQAYQYLNQILKYA-PNSHQARRLLASIQLRLGRVDEAIATLSPALGLD-PDDPAAL 366 (899)
T ss_pred HhCCCchhHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCChHHHHHHHHHHHHCCCHHHHHHHHHHHHhcC-CCCHHHH
Confidence 211 1122233334444555555555555544421 1112223333344444555555555554444433 2234444
Q ss_pred HHHHHhhhcCCChhHHHHHhhhCCCC--CCcccHHHH----------------------------------HHHHhhCCC
Q 003584 172 TGLVDMYAKCKCIFEAEYLFKMFPDG--KNHVAWTTM----------------------------------ITGYSQNGY 215 (809)
Q Consensus 172 ~~li~~y~~~g~~~~A~~~f~~~~~~--~~~~~~~~l----------------------------------i~~~~~~g~ 215 (809)
+.+...|.+.|++++|.+.|+++... .+...|..+ +..+.+.|+
T Consensus 367 ~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~~~~~ 446 (899)
T TIGR02917 367 SLLGEAYLALGDFEKAAEYLAKATELDPENAAARTQLGISKLSQGDPSEAIADLETAAQLDPELGRADLLLILSYLRSGQ 446 (899)
T ss_pred HHHHHHHHHCCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHhCCChHHHHHHHHHHHhhCCcchhhHHHHHHHHHhcCC
Confidence 44444555555555555555443220 123334444 444444555
Q ss_pred hHHHHHHHHHHHHCCCCCCcchHHHHHHHHhccCChHHHHHHHHHHHHhCCCCchhHHHHHHHHHHhCCChHHHHHHHhc
Q 003584 216 GFKAIECFRDMRVEGVESNQFTFPSILTACAAVSARDFGAQVHGCILSSGFEANVYVQSALIDMYAKCGDLDSARRLLEY 295 (809)
Q Consensus 216 ~~~A~~l~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~Li~~y~~~g~~~~A~~~f~~ 295 (809)
+++|+++++++... .+++..++..+...+...|++++|.+.+..+++.. +.+...+..+...+...|++++|.+.|+.
T Consensus 447 ~~~A~~~~~~~~~~-~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~la~~~~~~g~~~~A~~~~~~ 524 (899)
T TIGR02917 447 FDKALAAAKKLEKK-QPDNASLHNLLGAIYLGKGDLAKAREAFEKALSIE-PDFFPAAANLARIDIQEGNPDDAIQRFEK 524 (899)
T ss_pred HHHHHHHHHHHHHh-CCCCcHHHHHHHHHHHhCCCHHHHHHHHHHHHhhC-CCcHHHHHHHHHHHHHCCCHHHHHHHHHH
Confidence 55555555444432 22334444445555555555555555555554433 23334444455555555555555555544
Q ss_pred cCC---CCeeeHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCcccHHHHHHHhhcCCChHHHHHHHHHHHHhccCCchH
Q 003584 296 SEI---DNEVSWNSMIVGFARQGFHKEALSLFKKMHARDIKIDDFTYPSVLNCFASNIDLNNAKSVHSLIVKTGFEGYKF 372 (809)
Q Consensus 296 ~~~---~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~i~~~~~~~g~~~~~~ 372 (809)
+.. .+..++..+...+.+.|+.++|...|.++...+. .+...+..+...+...|+++.|..+++.+.+.. +.+..
T Consensus 525 ~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~-~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~ 602 (899)
T TIGR02917 525 VLTIDPKNLRAILALAGLYLRTGNEEEAVAWLEKAAELNP-QEIEPALALAQYYLGKGQLKKALAILNEAADAA-PDSPE 602 (899)
T ss_pred HHHhCcCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCc-cchhHHHHHHHHHHHCCCHHHHHHHHHHHHHcC-CCCHH
Confidence 321 2334445555555555555555555555544321 223334444555555555555555555554432 33444
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHhhcCC---CCHhHHHHHHHHHHhcCCHHHHHHHHHHHhhcCCccCHhHHHHHHHHHhc
Q 003584 373 VNNALIDMYAKQGNLDCAFMVFNLMQD---KDVISWTSLITGCAYHGSYEEALKYFSDMRISGICPDHVVVSSILSACAE 449 (809)
Q Consensus 373 ~~~~li~~y~~~g~~~~A~~~f~~~~~---~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~ 449 (809)
++..+...|.+.|++++|...|+.+.+ .+...|..+...|.+.|++++|...|+++.+.. +.+..++..+...+..
T Consensus 603 ~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~ 681 (899)
T TIGR02917 603 AWLMLGRAQLAAGDLNKAVSSFKKLLALQPDSALALLLLADAYAVMKNYAKAITSLKRALELK-PDNTEAQIGLAQLLLA 681 (899)
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC-CCCHHHHHHHHHHHHH
Confidence 555555555555555555555554432 234445555555555555555555555554431 2224444445555555
Q ss_pred ccchhHHHHHHHHHHHhCCCCChhHHhHHHHHHHhcCCHHHHHHHHHhcC--CCCeeechHHHHHHHhcCChHHHHHHHH
Q 003584 450 LTVLEFGQQVHAVFLKSGGCSSLSVDNSLVLVYAKCGCINDANRVFDSMH--TRDVITWTALIMGCAQNGKGKEALQFYD 527 (809)
Q Consensus 450 ~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~y~k~g~~~~A~~~~~~~~--~~~~~~~~~li~~~~~~g~~~~A~~l~~ 527 (809)
.|+++.|.+++..+.+.. +.+..++..+...|.+.|++++|.+.|+.+. .|+..++..++..+.+.|++++|.+.++
T Consensus 682 ~~~~~~A~~~~~~~~~~~-~~~~~~~~~~~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~ 760 (899)
T TIGR02917 682 AKRTESAKKIAKSLQKQH-PKAALGFELEGDLYLRQKDYPAAIQAYRKALKRAPSSQNAIKLHRALLASGNTAEAVKTLE 760 (899)
T ss_pred cCCHHHHHHHHHHHHhhC-cCChHHHHHHHHHHHHCCCHHHHHHHHHHHHhhCCCchHHHHHHHHHHHCCCHHHHHHHHH
Confidence 555555555555554443 3344444555555555555555555555543 2333444445555555555555555555
Q ss_pred HHHHCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHhHHhhCCCCChHHHHHHHHHHhhcCCHHHHHHHHHhCcC--CCC
Q 003584 528 QMLARGTKPDYITFVGLLFACSHAGLAENARWYFESMDKVYGIKPGPDHYACMIDLLGRSGKLIEAKALLDQMVG--EPD 605 (809)
Q Consensus 528 ~m~~~g~~pd~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~~~~~~~li~~~~~~g~~~eA~~~~~~m~~--~p~ 605 (809)
++.+.. +.+...+..+...|...|+.++|.++|+.+.+. .+++...+..+..++.+.|+ ++|+++++++.. +.+
T Consensus 761 ~~l~~~-~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~--~p~~~~~~~~l~~~~~~~~~-~~A~~~~~~~~~~~~~~ 836 (899)
T TIGR02917 761 AWLKTH-PNDAVLRTALAELYLAQKDYDKAIKHYRTVVKK--APDNAVVLNNLAWLYLELKD-PRALEYAEKALKLAPNI 836 (899)
T ss_pred HHHHhC-CCCHHHHHHHHHHHHHCcCHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHhcCc-HHHHHHHHHHHhhCCCC
Confidence 555431 233344555555555555555555555555432 22344455555555555555 555555554432 123
Q ss_pred HHHHHHHHHHHHhcCChhHHHHHHHHHhccCCCCCccHHhHhhhhhhcCChhHHHHHHHHHH
Q 003584 606 ATVWKALLSACRVHGDLELGERAANNLFELEPMNAMPYVQLSNMYSTAGKWEDAARVRKLMK 667 (809)
Q Consensus 606 ~~~~~~ll~a~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~ 667 (809)
+.+|..+...+...|++++|...++++++.+|.++.++..++.+|.+.|++++|.+++++|.
T Consensus 837 ~~~~~~~~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~ 898 (899)
T TIGR02917 837 PAILDTLGWLLVEKGEADRALPLLRKAVNIAPEAAAIRYHLALALLATGRKAEARKELDKLL 898 (899)
T ss_pred cHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCChHHHHHHHHHHHHcCCHHHHHHHHHHHh
Confidence 33455555555555555555555555555555555555555555555555555555555553
No 8
>TIGR02917 PEP_TPR_lipo putative PEP-CTERM system TPR-repeat lipoprotein. This protein family occurs in strictly within a subset of Gram-negative bacterial species with the proposed PEP-CTERM/exosortase system, analogous to the LPXTG/sortase system common in Gram-positive bacteria. This protein occurs in a species if and only if a transmembrane histidine kinase (TIGR02916) and a DNA-binding response regulator (TIGR02915) also occur. The present of tetratricopeptide repeats (TPR) suggests protein-protein interaction, possibly for the regulation of PEP-CTERM protein expression, since many PEP-CTERM proteins in these genomes are preceded by a proposed DNA binding site for the response regulator.
Probab=100.00 E-value=2e-34 Score=349.58 Aligned_cols=644 Identities=14% Similarity=-0.001 Sum_probs=436.9
Q ss_pred ccccccCcccccccccCCCCCcchHHHHHHHHhcCCChHHHHHHHHhcCC---CCcchHHHHHHHHHccCChhHHHHHhh
Q 003584 15 CRSKIIGPARYTHNVGNSVKPASDLNRALVDFSNSGEIDEAGQLFEKMSD---RDGFTWNTMIAAYANSGRLREAKKLFN 91 (809)
Q Consensus 15 ~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~---~~~~~~~~li~~~~~~g~~~~A~~~f~ 91 (809)
.+....+...+...+...+.....+..+...+...|+.+.|...|+.... .+..++..+...+...|++++|...|+
T Consensus 172 ~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~a~~~~p~~~~~~~~~~~~~~~~g~~~~A~~~~~ 251 (899)
T TIGR02917 172 ENRFDEARALIDEVLTADPGNVDALLLKGDLLLSLGNIELALAAYRKAIALRPNNPAVLLALATILIEAGEFEEAEKHAD 251 (899)
T ss_pred CCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHH
Confidence 33344455556666665565666777777888999999999999988765 356678888999999999999999999
Q ss_pred hCCCC---CcchHHHHHHHHHcCCCchhHHHHHHHHHHcCCCCCcc-cHHHHHHHhhcCCCchHHHHHHHHHHHhCCCCc
Q 003584 92 ETPFK---NFFTWSSLIYGYSNYGLDIEAFELFWQMQLEGYRPSQY-TLDNVLRLCSLKGLLQRGEQFHGYAIKTCFDLN 167 (809)
Q Consensus 92 ~~~~~---~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~-t~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~ 167 (809)
.+.+. +...+......+...|++++|...|+++.+.+ |+.. .+..+...+...|+++.|...+..+++.. +.+
T Consensus 252 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~--~~~~~~~~~~~~~~~~~g~~~~A~~~~~~~~~~~-p~~ 328 (899)
T TIGR02917 252 ALLKKAPNSPLAHYLKALVDFQKKNYEDARETLQDALKSA--PEYLPALLLAGASEYQLGNLEQAYQYLNQILKYA-PNS 328 (899)
T ss_pred HHHHhCCCCchHHHHHHHHHHHhcCHHHHHHHHHHHHHhC--CCchhHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCC
Confidence 87542 23344444556678899999999999998854 5533 23334456778999999999999998875 446
Q ss_pred hHHHHHHHHhhhcCCChhHHHHHhhhCCCC--CCcccHHHHHHHHhhCCChHHHHHHHHHHHHCCCCCCcchHHHHHHHH
Q 003584 168 AFVVTGLVDMYAKCKCIFEAEYLFKMFPDG--KNHVAWTTMITGYSQNGYGFKAIECFRDMRVEGVESNQFTFPSILTAC 245 (809)
Q Consensus 168 ~~~~~~li~~y~~~g~~~~A~~~f~~~~~~--~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~~~ 245 (809)
...+..+...+.+.|++++|...++.+... .+...|+.+...+.+.|++++|.+.|+++.+.. +.+...+..+...+
T Consensus 329 ~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~ 407 (899)
T TIGR02917 329 HQARRLLASIQLRLGRVDEAIATLSPALGLDPDDPAALSLLGEAYLALGDFEKAAEYLAKATELD-PENAAARTQLGISK 407 (899)
T ss_pred hHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcC-CCCHHHHHHHHHHH
Confidence 777888899999999999999999877541 456789999999999999999999999987653 22344455566666
Q ss_pred hccCChHHHHHHHHHHHHhCCCCchhHHHHHHHHHHhCCChHHHHHHHhccCC---CCeeeHHHHHHHHHhcCChhHHHH
Q 003584 246 AAVSARDFGAQVHGCILSSGFEANVYVQSALIDMYAKCGDLDSARRLLEYSEI---DNEVSWNSMIVGFARQGFHKEALS 322 (809)
Q Consensus 246 ~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~Li~~y~~~g~~~~A~~~f~~~~~---~~~~~~~~li~~~~~~g~~~~A~~ 322 (809)
...|+.++|...+..+.+... .+......++..|.+.|++++|..+++.+.. .+...|+.+...|...|++++|.+
T Consensus 408 ~~~~~~~~A~~~~~~a~~~~~-~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~ 486 (899)
T TIGR02917 408 LSQGDPSEAIADLETAAQLDP-ELGRADLLLILSYLRSGQFDKALAAAKKLEKKQPDNASLHNLLGAIYLGKGDLAKARE 486 (899)
T ss_pred HhCCChHHHHHHHHHHHhhCC-cchhhHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCCcHHHHHHHHHHHhCCCHHHHHH
Confidence 677777777777777666542 2223334444555555555555555544431 233445555555555555555555
Q ss_pred HHHHHHHCCC---------------------------------CCCcccHHHHHHHhhcCCChHHHHHHHHHHHHhccCC
Q 003584 323 LFKKMHARDI---------------------------------KIDDFTYPSVLNCFASNIDLNNAKSVHSLIVKTGFEG 369 (809)
Q Consensus 323 ~~~~m~~~g~---------------------------------~p~~~t~~~ll~~~~~~~~~~~a~~i~~~~~~~g~~~ 369 (809)
.|+++.+... +.+..++..+...+...|+.++|...+..+.+.+ +.
T Consensus 487 ~~~~a~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~-~~ 565 (899)
T TIGR02917 487 AFEKALSIEPDFFPAAANLARIDIQEGNPDDAIQRFEKVLTIDPKNLRAILALAGLYLRTGNEEEAVAWLEKAAELN-PQ 565 (899)
T ss_pred HHHHHHhhCCCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCcCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-cc
Confidence 5555443321 1123334444444444455555555554444433 23
Q ss_pred chHHHHHHHHHHHhcCCHHHHHHHHhhcCC---CCHhHHHHHHHHHHhcCCHHHHHHHHHHHhhcCCccCHhHHHHHHHH
Q 003584 370 YKFVNNALIDMYAKQGNLDCAFMVFNLMQD---KDVISWTSLITGCAYHGSYEEALKYFSDMRISGICPDHVVVSSILSA 446 (809)
Q Consensus 370 ~~~~~~~li~~y~~~g~~~~A~~~f~~~~~---~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a 446 (809)
+...+..++..|.+.|++++|..+++.+.+ .+...|..+...|.+.|++++|+..|+++.+.. +.+...+..+...
T Consensus 566 ~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~ 644 (899)
T TIGR02917 566 EIEPALALAQYYLGKGQLKKALAILNEAADAAPDSPEAWLMLGRAQLAAGDLNKAVSSFKKLLALQ-PDSALALLLLADA 644 (899)
T ss_pred chhHHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCChHHHHHHHHH
Confidence 334445555555555666666555555542 244566666666666666666666666665542 2234445555556
Q ss_pred HhcccchhHHHHHHHHHHHhCCCCChhHHhHHHHHHHhcCCHHHHHHHHHhcCC---CCeeechHHHHHHHhcCChHHHH
Q 003584 447 CAELTVLEFGQQVHAVFLKSGGCSSLSVDNSLVLVYAKCGCINDANRVFDSMHT---RDVITWTALIMGCAQNGKGKEAL 523 (809)
Q Consensus 447 ~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~y~k~g~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~g~~~~A~ 523 (809)
+...|+.++|...+..+.+.. +.+...+..++..+.+.|++++|..+++.+.+ .+...|..+...+...|++++|+
T Consensus 645 ~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~ 723 (899)
T TIGR02917 645 YAVMKNYAKAITSLKRALELK-PDNTEAQIGLAQLLLAAKRTESAKKIAKSLQKQHPKAALGFELEGDLYLRQKDYPAAI 723 (899)
T ss_pred HHHcCCHHHHHHHHHHHHhcC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCcCChHHHHHHHHHHHHCCCHHHHH
Confidence 666666666666666665543 34455666666666666777777766666652 24455666677777777777787
Q ss_pred HHHHHHHHCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHhHHhhCCCCChHHHHHHHHHHhhcCCHHHHHHHHHhCcC-
Q 003584 524 QFYDQMLARGTKPDYITFVGLLFACSHAGLAENARWYFESMDKVYGIKPGPDHYACMIDLLGRSGKLIEAKALLDQMVG- 602 (809)
Q Consensus 524 ~l~~~m~~~g~~pd~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~~~~~~~li~~~~~~g~~~eA~~~~~~m~~- 602 (809)
+.|+++... .|+..++..+..++.+.|++++|.+.++.+.+. .+.+...+..+...|.+.|+.++|.+.|+++..
T Consensus 724 ~~~~~~~~~--~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~l~~--~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~ 799 (899)
T TIGR02917 724 QAYRKALKR--APSSQNAIKLHRALLASGNTAEAVKTLEAWLKT--HPNDAVLRTALAELYLAQKDYDKAIKHYRTVVKK 799 (899)
T ss_pred HHHHHHHhh--CCCchHHHHHHHHHHHCCCHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHHCcCHHHHHHHHHHHHHh
Confidence 777777774 455566667777788888888888888777653 344567778888888888888888888888764
Q ss_pred -CCCHHHHHHHHHHHHhcCChhHHHHHHHHHhccCCCCCccHHhHhhhhhhcCChhHHHHHHHHHHhCCC
Q 003584 603 -EPDATVWKALLSACRVHGDLELGERAANNLFELEPMNAMPYVQLSNMYSTAGKWEDAARVRKLMKSRGI 671 (809)
Q Consensus 603 -~p~~~~~~~ll~a~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~ 671 (809)
++++.+++.+...+...|+ ++|+..+++++++.|+++..+..++.+|...|++++|.++++++.+.+.
T Consensus 800 ~p~~~~~~~~l~~~~~~~~~-~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~a~~~~~ 868 (899)
T TIGR02917 800 APDNAVVLNNLAWLYLELKD-PRALEYAEKALKLAPNIPAILDTLGWLLVEKGEADRALPLLRKAVNIAP 868 (899)
T ss_pred CCCCHHHHHHHHHHHHhcCc-HHHHHHHHHHHhhCCCCcHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCC
Confidence 3566688888888888888 7788888888888888888888888888889999999999988887653
No 9
>PF14432 DYW_deaminase: DYW family of nucleic acid deaminases
Probab=100.00 E-value=2.6e-36 Score=255.45 Aligned_cols=106 Identities=61% Similarity=1.074 Sum_probs=97.5
Q ss_pred ceeEEEECCEEEEEEeCCCCCcchHHHHHHHHHHHHHHHHcCCccCCccccccccchhh--------hhhhhhchHHHHH
Q 003584 676 GCSWVETNSQVHIFISEDRGHPLRTDIYSKIDEIMLLIKEAGYVPDMNFALHNVEEEGK--------EIGLAYHSEKLAV 747 (809)
Q Consensus 676 ~~s~~~~~~~~~~~~~~~~~~~~~~~i~~~l~~l~~~~~~~g~~~~~~~~~~~~~~~~~--------~~~~~~hse~la~ 747 (809)
|+||+++ |.|++||.+||+. ++..++...||.|++..+.|+++++++ +..+++||||||+
T Consensus 2 ~~~w~~~----h~F~sgd~shp~~--------~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~d~~~~~~~~~~HSEKlAi 69 (116)
T PF14432_consen 2 GCSWIEV----HSFVSGDRSHPQS--------ELINKMKEEGYVPDTKEVGHDVDEEEKHDYDEEEKEESLCYHSEKLAI 69 (116)
T ss_pred CCCccce----EEEEeCCCcCccH--------HHHHHHHHcCCcchhhhhCCCchhhhhhhcccccchhhhhccHHHHHH
Confidence 7899987 9999999999998 455667788999999999998877665 5689999999999
Q ss_pred HHHhhCCCCCCcEEEEccc-ccCcchhHHHHHHhhhhceEEEEecCCcccccc
Q 003584 748 AFGLLTLPQGAPIRIFKNL-RVCGDCHTAMKYISAVYLRHIILRDSNRFHHFK 799 (809)
Q Consensus 748 ~~~~~~~~~~~~~~i~kn~-r~c~dch~~~k~~s~~~~r~i~~rd~~~~h~f~ 799 (809)
||||+++ ||+||+ |||+|||+++|+||+++||+|||||++||||||
T Consensus 70 afgli~~------~vvkn~~RvC~DCH~~~K~iS~~~~ReIiVRD~~rfHhFk 116 (116)
T PF14432_consen 70 AFGLINT------RVVKNLKRVCGDCHSFIKFISKITGREIIVRDSNRFHHFK 116 (116)
T ss_pred Hhcccce------eEEecCCccchHHHHHHHHHHHHHCeEEEEeCCCeeeeCC
Confidence 9999998 999999 999999999999999999999999999999997
No 10
>PRK11447 cellulose synthase subunit BcsC; Provisional
Probab=99.97 E-value=1.1e-24 Score=264.52 Aligned_cols=618 Identities=12% Similarity=0.031 Sum_probs=462.1
Q ss_pred cchHHHHHHHHhcCCChHHHHHHHHhcCC--C-CcchHHHHHHHHHccCChhHHHHHhhhCCCCCc---chH--------
Q 003584 36 ASDLNRALVDFSNSGEIDEAGQLFEKMSD--R-DGFTWNTMIAAYANSGRLREAKKLFNETPFKNF---FTW-------- 101 (809)
Q Consensus 36 ~~~~~~ll~~~~~~~~~~~a~~~~~~~~~--~-~~~~~~~li~~~~~~g~~~~A~~~f~~~~~~~~---~~~-------- 101 (809)
...+...++-+...++.+.|++.+.+... | |+.++..+...+.+.|+.++|.+.+++..+.++ ..+
T Consensus 28 ~~~Ll~q~~~~~~~~~~d~a~~~l~kl~~~~p~~p~~~~~~~~~~l~~g~~~~A~~~l~~l~~~~P~~~~~~~~~~~~~~ 107 (1157)
T PRK11447 28 QQQLLEQVRLGEATHREDLVRQSLYRLELIDPNNPDVIAARFRLLLRQGDSDGAQKLLDRLSQLAPDSNAYRSSRTTMLL 107 (1157)
T ss_pred HHHHHHHHHHHHhhCChHHHHHHHHHHHccCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHhhCCCChHHHHHHHHHHh
Confidence 34456666778889999999999888764 3 567888889999999999999999998865322 121
Q ss_pred --------HHHHHHHHcCCCchhHHHHHHHHHHcCCCCCcccHHH-HHH-HhhcCCCchHHHHHHHHHHHhCCCCchHHH
Q 003584 102 --------SSLIYGYSNYGLDIEAFELFWQMQLEGYRPSQYTLDN-VLR-LCSLKGLLQRGEQFHGYAIKTCFDLNAFVV 171 (809)
Q Consensus 102 --------~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~-ll~-~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~ 171 (809)
..+...+.+.|++++|+..|+.+.+.. |+...... ... .....++.++|...++.+++.. +.+...+
T Consensus 108 ~~~~~~~~l~~A~ll~~~g~~~eA~~~~~~~l~~~--p~~~~la~~y~~~~~~~~g~~~~A~~~L~~ll~~~-P~~~~~~ 184 (1157)
T PRK11447 108 STPEGRQALQQARLLATTGRTEEALASYDKLFNGA--PPELDLAVEYWRLVAKLPAQRPEAINQLQRLNADY-PGNTGLR 184 (1157)
T ss_pred cCCchhhHHHHHHHHHhCCCHHHHHHHHHHHccCC--CCChHHHHHHHHHHhhCCccHHHHHHHHHHHHHhC-CCCHHHH
Confidence 223446889999999999999998743 33332211 222 2335689999999999999885 4467788
Q ss_pred HHHHHhhhcCCChhHHHHHhhhCCCCCCc-----ccH-----------------HHHHHHHhhCCChHHHHHHHHHHHHC
Q 003584 172 TGLVDMYAKCKCIFEAEYLFKMFPDGKNH-----VAW-----------------TTMITGYSQNGYGFKAIECFRDMRVE 229 (809)
Q Consensus 172 ~~li~~y~~~g~~~~A~~~f~~~~~~~~~-----~~~-----------------~~li~~~~~~g~~~~A~~l~~~m~~~ 229 (809)
..+...+...|+.++|...|+++...+.. ..| ...+..+-.......|...+.++...
T Consensus 185 ~~LA~ll~~~g~~~eAl~~l~~~~~~~~~~~~aa~~~~~~l~~~~~~~~~~~~l~~~l~~~p~~~~~~~A~~~L~~~~~~ 264 (1157)
T PRK11447 185 NTLALLLFSSGRRDEGFAVLEQMAKSPAGRDAAAQLWYGQIKDMPVSDASVAALQKYLQVFSDGDSVAAARSQLAEQQKQ 264 (1157)
T ss_pred HHHHHHHHccCCHHHHHHHHHHHhhCCCchHHHHHHHHHHHhccCCChhhHHHHHHHHHHCCCchHHHHHHHHHHHHHHh
Confidence 89999999999999999999987542210 111 11222222223344555666555443
Q ss_pred CCCCCcchHHHHHHHHhccCChHHHHHHHHHHHHhCCCCchhHHHHHHHHHHhCCChHHHHHHHhccCC--CCe---eeH
Q 003584 230 GVESNQFTFPSILTACAAVSARDFGAQVHGCILSSGFEANVYVQSALIDMYAKCGDLDSARRLLEYSEI--DNE---VSW 304 (809)
Q Consensus 230 g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~Li~~y~~~g~~~~A~~~f~~~~~--~~~---~~~ 304 (809)
...|+... ...-.++...|++++|...+...++.. +.+..++..|...|.+.|++++|...|++... |+. ..|
T Consensus 265 ~~dp~~~~-~~~G~~~~~~g~~~~A~~~l~~aL~~~-P~~~~a~~~Lg~~~~~~g~~~eA~~~l~~Al~~~p~~~~~~~~ 342 (1157)
T PRK11447 265 LADPAFRA-RAQGLAAVDSGQGGKAIPELQQAVRAN-PKDSEALGALGQAYSQQGDRARAVAQFEKALALDPHSSNRDKW 342 (1157)
T ss_pred ccCcchHH-HHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCccchhHH
Confidence 22333221 122345567899999999999999875 45788899999999999999999999987653 221 123
Q ss_pred HHH------------HHHHHhcCChhHHHHHHHHHHHCCCCCCcccHHHHHHHhhcCCChHHHHHHHHHHHHhccCCchH
Q 003584 305 NSM------------IVGFARQGFHKEALSLFKKMHARDIKIDDFTYPSVLNCFASNIDLNNAKSVHSLIVKTGFEGYKF 372 (809)
Q Consensus 305 ~~l------------i~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~i~~~~~~~g~~~~~~ 372 (809)
..+ ...+.+.|++++|+..|++..+..+ .+...+..+...+...|++++|.+.++.+++.. +.+..
T Consensus 343 ~~ll~~~~~~~~~~~g~~~~~~g~~~eA~~~~~~Al~~~P-~~~~a~~~Lg~~~~~~g~~~eA~~~y~~aL~~~-p~~~~ 420 (1157)
T PRK11447 343 ESLLKVNRYWLLIQQGDAALKANNLAQAERLYQQARQVDN-TDSYAVLGLGDVAMARKDYAAAERYYQQALRMD-PGNTN 420 (1157)
T ss_pred HHHHHhhhHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCC-CCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHH
Confidence 222 3456789999999999999998743 244566678889999999999999999999875 44556
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHhhcCCCC------------HhHHHHHHHHHHhcCCHHHHHHHHHHHhhcCCccC-HhH
Q 003584 373 VNNALIDMYAKQGNLDCAFMVFNLMQDKD------------VISWTSLITGCAYHGSYEEALKYFSDMRISGICPD-HVV 439 (809)
Q Consensus 373 ~~~~li~~y~~~g~~~~A~~~f~~~~~~~------------~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~-~~t 439 (809)
.+..+...|. .++.++|...++.+.... ...+..+...+...|++++|++.|++..+. .|+ ...
T Consensus 421 a~~~L~~l~~-~~~~~~A~~~l~~l~~~~~~~~~~~~~~l~~~~~~~~a~~~~~~g~~~eA~~~~~~Al~~--~P~~~~~ 497 (1157)
T PRK11447 421 AVRGLANLYR-QQSPEKALAFIASLSASQRRSIDDIERSLQNDRLAQQAEALENQGKWAQAAELQRQRLAL--DPGSVWL 497 (1157)
T ss_pred HHHHHHHHHH-hcCHHHHHHHHHhCCHHHHHHHHHHHHHhhhhHHHHHHHHHHHCCCHHHHHHHHHHHHHh--CCCCHHH
Confidence 6777777775 467899999998876421 123555677888999999999999999876 454 445
Q ss_pred HHHHHHHHhcccchhHHHHHHHHHHHhCCCCChhHHhHHHHHHHhcCCHHHHHHHHHhcCCCC----e---------eec
Q 003584 440 VSSILSACAELTVLEFGQQVHAVFLKSGGCSSLSVDNSLVLVYAKCGCINDANRVFDSMHTRD----V---------ITW 506 (809)
Q Consensus 440 ~~~ll~a~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~y~k~g~~~~A~~~~~~~~~~~----~---------~~~ 506 (809)
+..+...+...|+.++|...++.+++.. +.+......+...+.+.|+.++|...++.+.... . ..+
T Consensus 498 ~~~LA~~~~~~G~~~~A~~~l~~al~~~-P~~~~~~~a~al~l~~~~~~~~Al~~l~~l~~~~~~~~~~~l~~~l~~~~~ 576 (1157)
T PRK11447 498 TYRLAQDLRQAGQRSQADALMRRLAQQK-PNDPEQVYAYGLYLSGSDRDRAALAHLNTLPRAQWNSNIQELAQRLQSDQV 576 (1157)
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHcC-CCCHHHHHHHHHHHHhCCCHHHHHHHHHhCCchhcChhHHHHHHHHhhhHH
Confidence 6677778999999999999999998754 3455555566667788999999999999886321 1 112
Q ss_pred hHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHhHHhhCCCCChHHHHHHHHHHhh
Q 003584 507 TALIMGCAQNGKGKEALQFYDQMLARGTKPDYITFVGLLFACSHAGLAENARWYFESMDKVYGIKPGPDHYACMIDLLGR 586 (809)
Q Consensus 507 ~~li~~~~~~g~~~~A~~l~~~m~~~g~~pd~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~~~~~~~li~~~~~ 586 (809)
..+...+...|+.++|+.+++. .+++...+..+...+...|+.++|...|+...+. -+.+...+..++.+|..
T Consensus 577 l~~a~~l~~~G~~~eA~~~l~~-----~p~~~~~~~~La~~~~~~g~~~~A~~~y~~al~~--~P~~~~a~~~la~~~~~ 649 (1157)
T PRK11447 577 LETANRLRDSGKEAEAEALLRQ-----QPPSTRIDLTLADWAQQRGDYAAARAAYQRVLTR--EPGNADARLGLIEVDIA 649 (1157)
T ss_pred HHHHHHHHHCCCHHHHHHHHHh-----CCCCchHHHHHHHHHHHcCCHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHH
Confidence 2345678899999999999872 2445567778888999999999999999998853 23356788899999999
Q ss_pred cCCHHHHHHHHHhCcC-CC-CHHHHHHHHHHHHhcCChhHHHHHHHHHhccCCCCCc------cHHhHhhhhhhcCChhH
Q 003584 587 SGKLIEAKALLDQMVG-EP-DATVWKALLSACRVHGDLELGERAANNLFELEPMNAM------PYVQLSNMYSTAGKWED 658 (809)
Q Consensus 587 ~g~~~eA~~~~~~m~~-~p-~~~~~~~ll~a~~~~g~~~~A~~~~~~~~~~~p~~~~------~~~~l~~~~~~~g~~~~ 658 (809)
.|++++|.+.++..+. .| +..++..+..++...|+.++|.+.++++++..|+++. .+..++.++...|++++
T Consensus 650 ~g~~~eA~~~l~~ll~~~p~~~~~~~~la~~~~~~g~~~eA~~~~~~al~~~~~~~~~~~~a~~~~~~a~~~~~~G~~~~ 729 (1157)
T PRK11447 650 QGDLAAARAQLAKLPATANDSLNTQRRVALAWAALGDTAAAQRTFNRLIPQAKSQPPSMESALVLRDAARFEAQTGQPQQ 729 (1157)
T ss_pred CCCHHHHHHHHHHHhccCCCChHHHHHHHHHHHhCCCHHHHHHHHHHHhhhCccCCcchhhHHHHHHHHHHHHHcCCHHH
Confidence 9999999999998875 34 4557888899999999999999999999998765543 56667999999999999
Q ss_pred HHHHHHHHHh-CCC
Q 003584 659 AARVRKLMKS-RGI 671 (809)
Q Consensus 659 A~~~~~~m~~-~~~ 671 (809)
|...+++... .|+
T Consensus 730 A~~~y~~Al~~~~~ 743 (1157)
T PRK11447 730 ALETYKDAMVASGI 743 (1157)
T ss_pred HHHHHHHHHhhcCC
Confidence 9999998753 344
No 11
>PRK11447 cellulose synthase subunit BcsC; Provisional
Probab=99.96 E-value=4.3e-24 Score=259.43 Aligned_cols=585 Identities=11% Similarity=0.019 Sum_probs=435.7
Q ss_pred HHHHHHccCChhHHHHHhhhCCC---CCcchHHHHHHHHHcCCCchhHHHHHHHHHHcCCCCCcccHH------------
Q 003584 73 MIAAYANSGRLREAKKLFNETPF---KNFFTWSSLIYGYSNYGLDIEAFELFWQMQLEGYRPSQYTLD------------ 137 (809)
Q Consensus 73 li~~~~~~g~~~~A~~~f~~~~~---~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~------------ 137 (809)
.++.+-..++.+.|++.++++.. .|+..+..++..+.+.|+.++|...+++..+.. |+...+.
T Consensus 34 q~~~~~~~~~~d~a~~~l~kl~~~~p~~p~~~~~~~~~~l~~g~~~~A~~~l~~l~~~~--P~~~~~~~~~~~~~~~~~~ 111 (1157)
T PRK11447 34 QVRLGEATHREDLVRQSLYRLELIDPNNPDVIAARFRLLLRQGDSDGAQKLLDRLSQLA--PDSNAYRSSRTTMLLSTPE 111 (1157)
T ss_pred HHHHHHhhCChHHHHHHHHHHHccCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHhhC--CCChHHHHHHHHHHhcCCc
Confidence 45567778999999999987643 356788889999999999999999999999854 6665432
Q ss_pred -----HHHHHhhcCCCchHHHHHHHHHHHhCCCCchHHHH-HHHHhhhcCCChhHHHHHhhhCCCC--CCcccHHHHHHH
Q 003584 138 -----NVLRLCSLKGLLQRGEQFHGYAIKTCFDLNAFVVT-GLVDMYAKCKCIFEAEYLFKMFPDG--KNHVAWTTMITG 209 (809)
Q Consensus 138 -----~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~-~li~~y~~~g~~~~A~~~f~~~~~~--~~~~~~~~li~~ 209 (809)
.+.+.+...|++++|.+.++.+++... ++..... .+.......|+.++|.+.|+++... .+...+..+...
T Consensus 112 ~~~~l~~A~ll~~~g~~~eA~~~~~~~l~~~p-~~~~la~~y~~~~~~~~g~~~~A~~~L~~ll~~~P~~~~~~~~LA~l 190 (1157)
T PRK11447 112 GRQALQQARLLATTGRTEEALASYDKLFNGAP-PELDLAVEYWRLVAKLPAQRPEAINQLQRLNADYPGNTGLRNTLALL 190 (1157)
T ss_pred hhhHHHHHHHHHhCCCHHHHHHHHHHHccCCC-CChHHHHHHHHHHhhCCccHHHHHHHHHHHHHhCCCCHHHHHHHHHH
Confidence 223457788999999999999987653 3322211 1122223468999999999887652 355678889999
Q ss_pred HhhCCChHHHHHHHHHHHHCCCC----------------CCcc---hHHHHHHHHhccCChHHHHHHHHHHHHhCCCCch
Q 003584 210 YSQNGYGFKAIECFRDMRVEGVE----------------SNQF---TFPSILTACAAVSARDFGAQVHGCILSSGFEANV 270 (809)
Q Consensus 210 ~~~~g~~~~A~~l~~~m~~~g~~----------------p~~~---t~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~ 270 (809)
+.+.|+.++|++.|+++.+.... ++.. .+...+..+........+...+....+....|+.
T Consensus 191 l~~~g~~~eAl~~l~~~~~~~~~~~~aa~~~~~~l~~~~~~~~~~~~l~~~l~~~p~~~~~~~A~~~L~~~~~~~~dp~~ 270 (1157)
T PRK11447 191 LFSSGRRDEGFAVLEQMAKSPAGRDAAAQLWYGQIKDMPVSDASVAALQKYLQVFSDGDSVAAARSQLAEQQKQLADPAF 270 (1157)
T ss_pred HHccCCHHHHHHHHHHHhhCCCchHHHHHHHHHHHhccCCChhhHHHHHHHHHHCCCchHHHHHHHHHHHHHHhccCcch
Confidence 99999999999999998653210 0000 1111122222222344555555554444323332
Q ss_pred hHHHHHHHHHHhCCChHHHHHHHhccCC---CCeeeHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCc-ccH-------
Q 003584 271 YVQSALIDMYAKCGDLDSARRLLEYSEI---DNEVSWNSMIVGFARQGFHKEALSLFKKMHARDIKIDD-FTY------- 339 (809)
Q Consensus 271 ~~~~~Li~~y~~~g~~~~A~~~f~~~~~---~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~-~t~------- 339 (809)
. ...+...+...|++++|...|++... .+...+..+...|.+.|++++|+..|++..+....... ..+
T Consensus 271 ~-~~~~G~~~~~~g~~~~A~~~l~~aL~~~P~~~~a~~~Lg~~~~~~g~~~eA~~~l~~Al~~~p~~~~~~~~~~ll~~~ 349 (1157)
T PRK11447 271 R-ARAQGLAAVDSGQGGKAIPELQQAVRANPKDSEALGALGQAYSQQGDRARAVAQFEKALALDPHSSNRDKWESLLKVN 349 (1157)
T ss_pred H-HHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCccchhHHHHHHHhh
Confidence 2 23446678889999999999987653 46678899999999999999999999999876443221 111
Q ss_pred -----HHHHHHhhcCCChHHHHHHHHHHHHhccCCchHHHHHHHHHHHhcCCHHHHHHHHhhcCC---CCHhHHHHHHHH
Q 003584 340 -----PSVLNCFASNIDLNNAKSVHSLIVKTGFEGYKFVNNALIDMYAKQGNLDCAFMVFNLMQD---KDVISWTSLITG 411 (809)
Q Consensus 340 -----~~ll~~~~~~~~~~~a~~i~~~~~~~g~~~~~~~~~~li~~y~~~g~~~~A~~~f~~~~~---~~~~~~~~li~~ 411 (809)
......+...|++++|...++.+++.. +.+...+..|...|...|++++|++.|++..+ .+...+..+...
T Consensus 350 ~~~~~~~~g~~~~~~g~~~eA~~~~~~Al~~~-P~~~~a~~~Lg~~~~~~g~~~eA~~~y~~aL~~~p~~~~a~~~L~~l 428 (1157)
T PRK11447 350 RYWLLIQQGDAALKANNLAQAERLYQQARQVD-NTDSYAVLGLGDVAMARKDYAAAERYYQQALRMDPGNTNAVRGLANL 428 (1157)
T ss_pred hHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHH
Confidence 112345678899999999999999875 45667788899999999999999999999875 345667777777
Q ss_pred HHhcCCHHHHHHHHHHHhhcCCcc--------CHhHHHHHHHHHhcccchhHHHHHHHHHHHhCCCCChhHHhHHHHHHH
Q 003584 412 CAYHGSYEEALKYFSDMRISGICP--------DHVVVSSILSACAELTVLEFGQQVHAVFLKSGGCSSLSVDNSLVLVYA 483 (809)
Q Consensus 412 ~~~~g~~~~A~~~~~~m~~~g~~p--------~~~t~~~ll~a~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~y~ 483 (809)
|. .++.++|+.+++.+....... ....+......+...|+.++|.+.++.+++.. +.+..++..+...|.
T Consensus 429 ~~-~~~~~~A~~~l~~l~~~~~~~~~~~~~~l~~~~~~~~a~~~~~~g~~~eA~~~~~~Al~~~-P~~~~~~~~LA~~~~ 506 (1157)
T PRK11447 429 YR-QQSPEKALAFIASLSASQRRSIDDIERSLQNDRLAQQAEALENQGKWAQAAELQRQRLALD-PGSVWLTYRLAQDLR 506 (1157)
T ss_pred HH-hcCHHHHHHHHHhCCHHHHHHHHHHHHHhhhhHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHH
Confidence 74 467899999988765431100 01223445566778999999999999999876 446777888999999
Q ss_pred hcCCHHHHHHHHHhcC--CC-CeeechHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHH---------HHHHHHHHHHcc
Q 003584 484 KCGCINDANRVFDSMH--TR-DVITWTALIMGCAQNGKGKEALQFYDQMLARGTKPDYI---------TFVGLLFACSHA 551 (809)
Q Consensus 484 k~g~~~~A~~~~~~~~--~~-~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~pd~~---------t~~~ll~a~~~~ 551 (809)
+.|++++|...|+++. .| +...+..+...+...|+.++|+..++++......++.. .+..+...+...
T Consensus 507 ~~G~~~~A~~~l~~al~~~P~~~~~~~a~al~l~~~~~~~~Al~~l~~l~~~~~~~~~~~l~~~l~~~~~l~~a~~l~~~ 586 (1157)
T PRK11447 507 QAGQRSQADALMRRLAQQKPNDPEQVYAYGLYLSGSDRDRAALAHLNTLPRAQWNSNIQELAQRLQSDQVLETANRLRDS 586 (1157)
T ss_pred HcCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHhCCCHHHHHHHHHhCCchhcChhHHHHHHHHhhhHHHHHHHHHHHC
Confidence 9999999999999875 23 44455555556778999999999998865433233322 133456778899
Q ss_pred CCHHHHHHHHHHhHHhhCCCCChHHHHHHHHHHhhcCCHHHHHHHHHhCcC-CC-CHHHHHHHHHHHHhcCChhHHHHHH
Q 003584 552 GLAENARWYFESMDKVYGIKPGPDHYACMIDLLGRSGKLIEAKALLDQMVG-EP-DATVWKALLSACRVHGDLELGERAA 629 (809)
Q Consensus 552 g~~~~a~~~~~~m~~~~~~~p~~~~~~~li~~~~~~g~~~eA~~~~~~m~~-~p-~~~~~~~ll~a~~~~g~~~~A~~~~ 629 (809)
|+.++|..+++ ..+++...+..+.+.|.+.|++++|++.+++... .| +...+..++..+...|+.++|+..+
T Consensus 587 G~~~eA~~~l~------~~p~~~~~~~~La~~~~~~g~~~~A~~~y~~al~~~P~~~~a~~~la~~~~~~g~~~eA~~~l 660 (1157)
T PRK11447 587 GKEAEAEALLR------QQPPSTRIDLTLADWAQQRGDYAAARAAYQRVLTREPGNADARLGLIEVDIAQGDLAAARAQL 660 (1157)
T ss_pred CCHHHHHHHHH------hCCCCchHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHH
Confidence 99999999986 1234556778899999999999999999998885 34 5669999999999999999999999
Q ss_pred HHHhccCCCCCccHHhHhhhhhhcCChhHHHHHHHHHHhCC
Q 003584 630 NNLFELEPMNAMPYVQLSNMYSTAGKWEDAARVRKLMKSRG 670 (809)
Q Consensus 630 ~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~ 670 (809)
+++++..|+++..+..++.++...|++++|.++++++....
T Consensus 661 ~~ll~~~p~~~~~~~~la~~~~~~g~~~eA~~~~~~al~~~ 701 (1157)
T PRK11447 661 AKLPATANDSLNTQRRVALAWAALGDTAAAQRTFNRLIPQA 701 (1157)
T ss_pred HHHhccCCCChHHHHHHHHHHHhCCCHHHHHHHHHHHhhhC
Confidence 99999999999999999999999999999999999988654
No 12
>PRK09782 bacteriophage N4 receptor, outer membrane subunit; Provisional
Probab=99.93 E-value=2.8e-21 Score=223.80 Aligned_cols=619 Identities=12% Similarity=-0.016 Sum_probs=391.8
Q ss_pred CcccccccccCCCCCcchHHHHHHHHhcCCChHHHHHHHHhcCCCCc--chHHHHHHHHHccCChhHHHHHhhhCCC--C
Q 003584 21 GPARYTHNVGNSVKPASDLNRALVDFSNSGEIDEAGQLFEKMSDRDG--FTWNTMIAAYANSGRLREAKKLFNETPF--K 96 (809)
Q Consensus 21 ~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~--~~~~~li~~~~~~g~~~~A~~~f~~~~~--~ 96 (809)
+...|.+.+...|.....+..+.+.+...|+.++|+..+++..+.|+ ..+..++. ..++.++|..+++++.. |
T Consensus 63 A~~~l~~Al~~dP~n~~~~~~LA~~yl~~g~~~~A~~~~~kAv~ldP~n~~~~~~La---~i~~~~kA~~~ye~l~~~~P 139 (987)
T PRK09782 63 AIREFEYIHQQVPDNIPLTLYLAEAYRHFGHDDRARLLLEDQLKRHPGDARLERSLA---AIPVEVKSVTTVEELLAQQK 139 (987)
T ss_pred HHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCcccHHHHHHHH---HhccChhHHHHHHHHHHhCC
Confidence 44445555555555555556666666666666666666666554322 22222222 22666666666666543 2
Q ss_pred -CcchHHHHHHH--------HHcCCCchhHHHHHHHHHHcCCCCCcccHHHH-HHHhhcCCCchHHHHHHHHHHHhCCCC
Q 003584 97 -NFFTWSSLIYG--------YSNYGLDIEAFELFWQMQLEGYRPSQYTLDNV-LRLCSLKGLLQRGEQFHGYAIKTCFDL 166 (809)
Q Consensus 97 -~~~~~~~li~~--------~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~l-l~~~~~~~~~~~a~~~~~~~~~~g~~~ 166 (809)
+...+..+... |.+.+...+++ + .......|+..+.... .+.+...++++++..++..+.+.+. .
T Consensus 140 ~n~~~~~~la~~~~~~~~l~y~q~eqAl~AL---~-lr~~~~~~~~~vL~L~~~rlY~~l~dw~~Ai~lL~~L~k~~p-l 214 (987)
T PRK09782 140 ACDAVPTLRCRSEVGQNALRLAQLPVARAQL---N-DATFAASPEGKTLRTDLLQRAIYLKQWSQADTLYNEARQQNT-L 214 (987)
T ss_pred CChhHHHHHHHHhhccchhhhhhHHHHHHHH---H-HhhhCCCCCcHHHHHHHHHHHHHHhCHHHHHHHHHHHHhcCC-C
Confidence 12233333333 44443333333 3 2222222333333333 5666777777777777777777763 2
Q ss_pred chHHHHHHHHhhhc-CCChhHHHHHhhhCCCCCCcccHHHHHHHHhhCCChHHHHHHHHHHHHCCCC-CCcchHHHHHHH
Q 003584 167 NAFVVTGLVDMYAK-CKCIFEAEYLFKMFPDGKNHVAWTTMITGYSQNGYGFKAIECFRDMRVEGVE-SNQFTFPSILTA 244 (809)
Q Consensus 167 ~~~~~~~li~~y~~-~g~~~~A~~~f~~~~~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~-p~~~t~~~ll~~ 244 (809)
+......|-.+|.. .++ ++|..+++.... .|...+..+...|.+.|+.++|.++++++...-.. |+..++.-++.
T Consensus 215 ~~~~~~~L~~ay~q~l~~-~~a~al~~~~lk-~d~~l~~ala~~yi~~G~~~~A~~~L~~~~~~~~~~~~~~~~~~~l~- 291 (987)
T PRK09782 215 SAAERRQWFDVLLAGQLD-DRLLALQSQGIF-TDPQSRITYATALAYRGEKARLQHYLIENKPLFTTDAQEKSWLYLLS- 291 (987)
T ss_pred CHHHHHHHHHHHHHhhCH-HHHHHHhchhcc-cCHHHHHHHHHHHHHCCCHHHHHHHHHhCcccccCCCccHHHHHHHH-
Confidence 34445555556666 355 666666554333 46667777777777777777777777776543222 44444443332
Q ss_pred HhccCChH-HHHHHHHHHHHhCCCCc-hhHHHHHHHHHHhCCChHHHHHHHhccCCCCeeeHHHHHH--HHHhcCChhHH
Q 003584 245 CAAVSARD-FGAQVHGCILSSGFEAN-VYVQSALIDMYAKCGDLDSARRLLEYSEIDNEVSWNSMIV--GFARQGFHKEA 320 (809)
Q Consensus 245 ~~~~~~~~-~a~~~~~~~~~~g~~~~-~~~~~~Li~~y~~~g~~~~A~~~f~~~~~~~~~~~~~li~--~~~~~g~~~~A 320 (809)
+.+... .+..-+.. .+.++ ....-.+++.+.+.++++.|.++.+ ....+. . ..+. +....+...++
T Consensus 292 --r~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~-~--~~~r~~~~~~~~~~~~~ 361 (987)
T PRK09782 292 --KYSANPVQALANYTV----QFADNRQYVVGATLPVLLKEGQYDAAQKLLA-TLPANE-M--LEERYAVSVATRNKAEA 361 (987)
T ss_pred --hccCchhhhccchhh----hhHHHHHHHHHHHHHHHHhccHHHHHHHHhc-CCCcch-H--HHHHHhhccccCchhHH
Confidence 222221 01100000 00111 1223345788889999998887744 222232 1 2222 22234677778
Q ss_pred HHHHHHHHHCCCCCCcccHHHHHHHhhcCCChHHHHHHHHHHHHh-c-cCCchHHHHHHHHHHHhcCC---HHHHHHH--
Q 003584 321 LSLFKKMHARDIKIDDFTYPSVLNCFASNIDLNNAKSVHSLIVKT-G-FEGYKFVNNALIDMYAKQGN---LDCAFMV-- 393 (809)
Q Consensus 321 ~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~i~~~~~~~-g-~~~~~~~~~~li~~y~~~g~---~~~A~~~-- 393 (809)
...++.|.+... -+......+--.....|+.++|.+++...... + -..+....+-|+..|.+.+. ..++..+
T Consensus 362 ~~~~~~~y~~~~-~~~~~l~q~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~l~~ 440 (987)
T PRK09782 362 LRLARLLYQQEP-ANLTRLDQLTWQLMQNGQSREAADLLLQRYPFQGDARLSQTLMARLASLLESHPYLATPAKVAILSK 440 (987)
T ss_pred HHHHHHHHhcCC-CCHHHHHHHHHHHHHcccHHHHHHHHHHhcCCCcccccCHHHHHHHHHHHHhCCcccchHHHHHhcc
Confidence 777777876521 13333333333456788899999999888763 1 12345566678888888776 3333222
Q ss_pred -----------------------HhhcCC---C--CHhHHHHHHHHHHhcCCHHHHHHHHHHHhhcCCccCHhHHHHHHH
Q 003584 394 -----------------------FNLMQD---K--DVISWTSLITGCAYHGSYEEALKYFSDMRISGICPDHVVVSSILS 445 (809)
Q Consensus 394 -----------------------f~~~~~---~--~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~ 445 (809)
+..... + +...|..+..++.. ++.++|+..+.+.... .|+......+..
T Consensus 441 ~~~~~~~~~~~~~~~~~~~~~~~~~~al~~~p~~~~~~a~~~LG~~l~~-~~~~eAi~a~~~Al~~--~Pd~~~~L~lA~ 517 (987)
T PRK09782 441 PLPLAEQRQWQSQLPGIADNCPAIVRLLGDMSPSYDAAAWNRLAKCYRD-TLPGVALYAWLQAEQR--QPDAWQHRAVAY 517 (987)
T ss_pred ccccchhHHHHhhhhhhhhhHHHHHHhcccCCCCCCHHHHHHHHHHHHh-CCcHHHHHHHHHHHHh--CCchHHHHHHHH
Confidence 111111 2 55677777777776 7888899988887765 476655444445
Q ss_pred HHhcccchhHHHHHHHHHHHhCCCCChhHHhHHHHHHHhcCCHHHHHHHHHhcCCCCeeechHHHH---HHHhcCChHHH
Q 003584 446 ACAELTVLEFGQQVHAVFLKSGGCSSLSVDNSLVLVYAKCGCINDANRVFDSMHTRDVITWTALIM---GCAQNGKGKEA 522 (809)
Q Consensus 446 a~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~y~k~g~~~~A~~~~~~~~~~~~~~~~~li~---~~~~~g~~~~A 522 (809)
++...|+++.|...+..+... +|+...+..+...+.+.|++++|...|+...+.++..++.... .....|++++|
T Consensus 518 al~~~Gr~eeAi~~~rka~~~--~p~~~a~~~la~all~~Gd~~eA~~~l~qAL~l~P~~~~l~~~La~~l~~~Gr~~eA 595 (987)
T PRK09782 518 QAYQVEDYATALAAWQKISLH--DMSNEDLLAAANTAQAAGNGAARDRWLQQAEQRGLGDNALYWWLHAQRYIPGQPELA 595 (987)
T ss_pred HHHHCCCHHHHHHHHHHHhcc--CCCcHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCccHHHHHHHHHHHHhCCCHHHH
Confidence 556889999999999887554 3444455667788889999999999998887544333333332 33344999999
Q ss_pred HHHHHHHHHCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHhHHhhCCCC-ChHHHHHHHHHHhhcCCHHHHHHHHHhCc
Q 003584 523 LQFYDQMLARGTKPDYITFVGLLFACSHAGLAENARWYFESMDKVYGIKP-GPDHYACMIDLLGRSGKLIEAKALLDQMV 601 (809)
Q Consensus 523 ~~l~~~m~~~g~~pd~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p-~~~~~~~li~~~~~~g~~~eA~~~~~~m~ 601 (809)
+..|++..+ +.|+...+..+..++.+.|+.++|...++.... +.| +...+..+...+...|+.++|++.+++..
T Consensus 596 l~~~~~AL~--l~P~~~a~~~LA~~l~~lG~~deA~~~l~~AL~---l~Pd~~~a~~nLG~aL~~~G~~eeAi~~l~~AL 670 (987)
T PRK09782 596 LNDLTRSLN--IAPSANAYVARATIYRQRHNVPAAVSDLRAALE---LEPNNSNYQAALGYALWDSGDIAQSREMLERAH 670 (987)
T ss_pred HHHHHHHHH--hCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHH---hCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHH
Confidence 999999988 467877888899999999999999999998874 455 45677888889999999999999999877
Q ss_pred C-CC-CHHHHHHHHHHHHhcCChhHHHHHHHHHhccCCCCCccHHhHhhhhhhcCChhHHHHHHHHHHhCCC
Q 003584 602 G-EP-DATVWKALLSACRVHGDLELGERAANNLFELEPMNAMPYVQLSNMYSTAGKWEDAARVRKLMKSRGI 671 (809)
Q Consensus 602 ~-~p-~~~~~~~ll~a~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~ 671 (809)
. .| ++..+..+..++...|+.++|+..++++++++|++.......+++.....+++.|.+-+++.-..++
T Consensus 671 ~l~P~~~~a~~nLA~al~~lGd~~eA~~~l~~Al~l~P~~a~i~~~~g~~~~~~~~~~~a~~~~~r~~~~~~ 742 (987)
T PRK09782 671 KGLPDDPALIRQLAYVNQRLDDMAATQHYARLVIDDIDNQALITPLTPEQNQQRFNFRRLHEEVGRRWTFSF 742 (987)
T ss_pred HhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCCchhhhhhhHHHHHHHHHHHHHHHHHHHhhcCc
Confidence 4 35 5568999999999999999999999999999999999999999999999999988887777655443
No 13
>PRK09782 bacteriophage N4 receptor, outer membrane subunit; Provisional
Probab=99.93 E-value=1.6e-20 Score=217.48 Aligned_cols=563 Identities=12% Similarity=-0.004 Sum_probs=383.9
Q ss_pred cCChhHHHHHhhhCCC---CCcchHHHHHHHHHcCCCchhHHHHHHHHHHcCCCCCcccHHHHHHHhhcCCCchHHHHHH
Q 003584 80 SGRLREAKKLFNETPF---KNFFTWSSLIYGYSNYGLDIEAFELFWQMQLEGYRPSQYTLDNVLRLCSLKGLLQRGEQFH 156 (809)
Q Consensus 80 ~g~~~~A~~~f~~~~~---~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~ 156 (809)
.|++++|...|+...+ .+..++..|...|.+.|++++|...+++..+. .|+...|..++... ++.+.+..++
T Consensus 57 ~Gd~~~A~~~l~~Al~~dP~n~~~~~~LA~~yl~~g~~~~A~~~~~kAv~l--dP~n~~~~~~La~i---~~~~kA~~~y 131 (987)
T PRK09782 57 NNDEATAIREFEYIHQQVPDNIPLTLYLAEAYRHFGHDDRARLLLEDQLKR--HPGDARLERSLAAI---PVEVKSVTTV 131 (987)
T ss_pred CCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhc--CcccHHHHHHHHHh---ccChhHHHHH
Confidence 3777777777776543 23456677777777888888888877777764 36555555544323 6666777777
Q ss_pred HHHHHhCCCCchHHHHHHHHh--------hhcCCChhHHHHHhhhCCCCCCcccHHH-HHHHHhhCCChHHHHHHHHHHH
Q 003584 157 GYAIKTCFDLNAFVVTGLVDM--------YAKCKCIFEAEYLFKMFPDGKNHVAWTT-MITGYSQNGYGFKAIECFRDMR 227 (809)
Q Consensus 157 ~~~~~~g~~~~~~~~~~li~~--------y~~~g~~~~A~~~f~~~~~~~~~~~~~~-li~~~~~~g~~~~A~~l~~~m~ 227 (809)
+.+++.. +.+..++..+... |.+.+...+|.. .......++...... +...|.+.|++++|++++.++.
T Consensus 132 e~l~~~~-P~n~~~~~~la~~~~~~~~l~y~q~eqAl~AL~-lr~~~~~~~~~vL~L~~~rlY~~l~dw~~Ai~lL~~L~ 209 (987)
T PRK09782 132 EELLAQQ-KACDAVPTLRCRSEVGQNALRLAQLPVARAQLN-DATFAASPEGKTLRTDLLQRAIYLKQWSQADTLYNEAR 209 (987)
T ss_pred HHHHHhC-CCChhHHHHHHHHhhccchhhhhhHHHHHHHHH-HhhhCCCCCcHHHHHHHHHHHHHHhCHHHHHHHHHHHH
Confidence 7777765 2344445444444 777766666666 322222123333333 4788999999999999999998
Q ss_pred HCCCCCCcchHHHHHHHHhc-cCChHHHHHHHHHHHHhCCCCchhHHHHHHHHHHhCCChHHHHHHHhccCC-----CCe
Q 003584 228 VEGVESNQFTFPSILTACAA-VSARDFGAQVHGCILSSGFEANVYVQSALIDMYAKCGDLDSARRLLEYSEI-----DNE 301 (809)
Q Consensus 228 ~~g~~p~~~t~~~ll~~~~~-~~~~~~a~~~~~~~~~~g~~~~~~~~~~Li~~y~~~g~~~~A~~~f~~~~~-----~~~ 301 (809)
+.+... ..-...+-.++.. .++ +.+..++.. .+..++.+...+.+.|.+.|+.++|.+++++++. |+.
T Consensus 210 k~~pl~-~~~~~~L~~ay~q~l~~-~~a~al~~~----~lk~d~~l~~ala~~yi~~G~~~~A~~~L~~~~~~~~~~~~~ 283 (987)
T PRK09782 210 QQNTLS-AAERRQWFDVLLAGQLD-DRLLALQSQ----GIFTDPQSRITYATALAYRGEKARLQHYLIENKPLFTTDAQE 283 (987)
T ss_pred hcCCCC-HHHHHHHHHHHHHhhCH-HHHHHHhch----hcccCHHHHHHHHHHHHHCCCHHHHHHHHHhCcccccCCCcc
Confidence 875332 3334445455555 355 666666442 3346788888999999999999999999987763 222
Q ss_pred eeHHH------------------------------HHHHHHhcCChhHHHHHHHHHHHCCCCCCcccHHHHHHHhhcCCC
Q 003584 302 VSWNS------------------------------MIVGFARQGFHKEALSLFKKMHARDIKIDDFTYPSVLNCFASNID 351 (809)
Q Consensus 302 ~~~~~------------------------------li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~ 351 (809)
.+|-- ++.-+.+.++++-+.++. ...|.......-..+....+.
T Consensus 284 ~~~~~~l~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------~~~~~~~~~~~r~~~~~~~~~ 357 (987)
T PRK09782 284 KSWLYLLSKYSANPVQALANYTVQFADNRQYVVGATLPVLLKEGQYDAAQKLL------ATLPANEMLEERYAVSVATRN 357 (987)
T ss_pred HHHHHHHHhccCchhhhccchhhhhHHHHHHHHHHHHHHHHhccHHHHHHHHh------cCCCcchHHHHHHhhccccCc
Confidence 22211 134445555555444331 134444432222222234466
Q ss_pred hHHHHHHHHHHHHhccCCchHHHHHHHHHHHhcCCHHHHHHHHhhcCC-C-----CHhHHHHHHHHHHhcCC---HHHHH
Q 003584 352 LNNAKSVHSLIVKTGFEGYKFVNNALIDMYAKQGNLDCAFMVFNLMQD-K-----DVISWTSLITGCAYHGS---YEEAL 422 (809)
Q Consensus 352 ~~~a~~i~~~~~~~g~~~~~~~~~~li~~y~~~g~~~~A~~~f~~~~~-~-----~~~~~~~li~~~~~~g~---~~~A~ 422 (809)
..++.+.+..+.+.. +-+....--+.-...+.|+.++|..+|+..-. + +...-+-++..|.+.+. ..++.
T Consensus 358 ~~~~~~~~~~~y~~~-~~~~~~l~q~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~ 436 (987)
T PRK09782 358 KAEALRLARLLYQQE-PANLTRLDQLTWQLMQNGQSREAADLLLQRYPFQGDARLSQTLMARLASLLESHPYLATPAKVA 436 (987)
T ss_pred hhHHHHHHHHHHhcC-CCCHHHHHHHHHHHHHcccHHHHHHHHHHhcCCCcccccCHHHHHHHHHHHHhCCcccchHHHH
Confidence 677777777776652 22444444444557789999999999998765 2 23345577778877766 44444
Q ss_pred HH------------HH----------HHhh-cCCccC---HhHHHHHHHHHhcccchhHHHHHHHHHHHhCCCCChhHHh
Q 003584 423 KY------------FS----------DMRI-SGICPD---HVVVSSILSACAELTVLEFGQQVHAVFLKSGGCSSLSVDN 476 (809)
Q Consensus 423 ~~------------~~----------~m~~-~g~~p~---~~t~~~ll~a~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~ 476 (809)
.+ .. .... .+..|+ ...+..+-..+.. +..++|...+....... |+.....
T Consensus 437 ~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~al~~~p~~~~~~a~~~LG~~l~~-~~~~eAi~a~~~Al~~~--Pd~~~~L 513 (987)
T PRK09782 437 ILSKPLPLAEQRQWQSQLPGIADNCPAIVRLLGDMSPSYDAAAWNRLAKCYRD-TLPGVALYAWLQAEQRQ--PDAWQHR 513 (987)
T ss_pred HhccccccchhHHHHhhhhhhhhhHHHHHHhcccCCCCCCHHHHHHHHHHHHh-CCcHHHHHHHHHHHHhC--CchHHHH
Confidence 33 11 1111 112233 3444444444444 78888998777776654 4444444
Q ss_pred HHHHHHHhcCCHHHHHHHHHhcC--CCCeeechHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHH-HHHHHHHHHHccCC
Q 003584 477 SLVLVYAKCGCINDANRVFDSMH--TRDVITWTALIMGCAQNGKGKEALQFYDQMLARGTKPDYI-TFVGLLFACSHAGL 553 (809)
Q Consensus 477 ~li~~y~k~g~~~~A~~~~~~~~--~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~pd~~-t~~~ll~a~~~~g~ 553 (809)
.+...+...|++++|...|+++. .++...+..+...+.+.|+.++|...|++.++. .|+.. .+..+.......|+
T Consensus 514 ~lA~al~~~Gr~eeAi~~~rka~~~~p~~~a~~~la~all~~Gd~~eA~~~l~qAL~l--~P~~~~l~~~La~~l~~~Gr 591 (987)
T PRK09782 514 AVAYQAYQVEDYATALAAWQKISLHDMSNEDLLAAANTAQAAGNGAARDRWLQQAEQR--GLGDNALYWWLHAQRYIPGQ 591 (987)
T ss_pred HHHHHHHHCCCHHHHHHHHHHHhccCCCcHHHHHHHHHHHHCCCHHHHHHHHHHHHhc--CCccHHHHHHHHHHHHhCCC
Confidence 44555578999999999999876 345556777788899999999999999999985 35443 33344455667799
Q ss_pred HHHHHHHHHHhHHhhCCCCChHHHHHHHHHHhhcCCHHHHHHHHHhCcC-CC-CHHHHHHHHHHHHhcCChhHHHHHHHH
Q 003584 554 AENARWYFESMDKVYGIKPGPDHYACMIDLLGRSGKLIEAKALLDQMVG-EP-DATVWKALLSACRVHGDLELGERAANN 631 (809)
Q Consensus 554 ~~~a~~~~~~m~~~~~~~p~~~~~~~li~~~~~~g~~~eA~~~~~~m~~-~p-~~~~~~~ll~a~~~~g~~~~A~~~~~~ 631 (809)
+++|...++... .+.|+...|..+..++.+.|+.++|...+++... .| +...+..+..++...|+.++|+..+++
T Consensus 592 ~~eAl~~~~~AL---~l~P~~~a~~~LA~~l~~lG~~deA~~~l~~AL~l~Pd~~~a~~nLG~aL~~~G~~eeAi~~l~~ 668 (987)
T PRK09782 592 PELALNDLTRSL---NIAPSANAYVARATIYRQRHNVPAAVSDLRAALELEPNNSNYQAALGYALWDSGDIAQSREMLER 668 (987)
T ss_pred HHHHHHHHHHHH---HhCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHH
Confidence 999999999887 4567888999999999999999999999998875 35 455889999999999999999999999
Q ss_pred HhccCCCCCccHHhHhhhhhhcCChhHHHHHHHHHHhCC
Q 003584 632 LFELEPMNAMPYVQLSNMYSTAGKWEDAARVRKLMKSRG 670 (809)
Q Consensus 632 ~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~ 670 (809)
+++++|+++..+..++.+|...|++++|...+++..+..
T Consensus 669 AL~l~P~~~~a~~nLA~al~~lGd~~eA~~~l~~Al~l~ 707 (987)
T PRK09782 669 AHKGLPDDPALIRQLAYVNQRLDDMAATQHYARLVIDDI 707 (987)
T ss_pred HHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcC
Confidence 999999999999999999999999999999999987654
No 14
>KOG4626 consensus O-linked N-acetylglucosamine transferase OGT [Carbohydrate transport and metabolism; Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=99.89 E-value=4.7e-20 Score=188.61 Aligned_cols=450 Identities=16% Similarity=0.112 Sum_probs=350.9
Q ss_pred HHHHHHHHhhCCChHHHHHHHHHHHHCCCCCCcchHHHHHHHHhccCChHHHHHHHHHHHHhCCCCchhHHHHHHHHHHh
Q 003584 203 WTTMITGYSQNGYGFKAIECFRDMRVEGVESNQFTFPSILTACAAVSARDFGAQVHGCILSSGFEANVYVQSALIDMYAK 282 (809)
Q Consensus 203 ~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~Li~~y~~ 282 (809)
-..|..-..+.|++++|.+.-...-++. +.+..+...+-..+....+++...+--...++.. +.-..+|..+.+.+-.
T Consensus 51 ~l~lah~~yq~gd~~~a~~h~nmv~~~d-~t~~~~llll~ai~~q~~r~d~s~a~~~~a~r~~-~q~ae~ysn~aN~~ke 128 (966)
T KOG4626|consen 51 RLELAHRLYQGGDYKQAEKHCNMVGQED-PTNTERLLLLSAIFFQGSRLDKSSAGSLLAIRKN-PQGAEAYSNLANILKE 128 (966)
T ss_pred HHHHHHHHHhccCHHHHHHHHhHhhccC-CCcccceeeehhhhhcccchhhhhhhhhhhhhcc-chHHHHHHHHHHHHHH
Confidence 4556666778889998888655443332 1222222223333444444544443333333332 3346688889999999
Q ss_pred CCChHHHHHHHhccCC---CCeeeHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCcccHHHH-HHHhhcCCChHHHHHH
Q 003584 283 CGDLDSARRLLEYSEI---DNEVSWNSMIVGFARQGFHKEALSLFKKMHARDIKIDDFTYPSV-LNCFASNIDLNNAKSV 358 (809)
Q Consensus 283 ~g~~~~A~~~f~~~~~---~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~l-l~~~~~~~~~~~a~~i 358 (809)
.|++++|..+++.+.+ ..+..|..+..++...|+.+.|.+.|.+..+. .|+.....+- -......|++++|..-
T Consensus 129 rg~~~~al~~y~~aiel~p~fida~inla~al~~~~~~~~a~~~~~~alql--nP~l~ca~s~lgnLlka~Grl~ea~~c 206 (966)
T KOG4626|consen 129 RGQLQDALALYRAAIELKPKFIDAYINLAAALVTQGDLELAVQCFFEALQL--NPDLYCARSDLGNLLKAEGRLEEAKAC 206 (966)
T ss_pred hchHHHHHHHHHHHHhcCchhhHHHhhHHHHHHhcCCCcccHHHHHHHHhc--CcchhhhhcchhHHHHhhcccchhHHH
Confidence 9999999999987664 35678999999999999999999999988774 4555443332 2334456888899888
Q ss_pred HHHHHHhccCCchHHHHHHHHHHHhcCCHHHHHHHHhhcCCCC---HhHHHHHHHHHHhcCCHHHHHHHHHHHhhcCCcc
Q 003584 359 HSLIVKTGFEGYKFVNNALIDMYAKQGNLDCAFMVFNLMQDKD---VISWTSLITGCAYHGSYEEALKYFSDMRISGICP 435 (809)
Q Consensus 359 ~~~~~~~g~~~~~~~~~~li~~y~~~g~~~~A~~~f~~~~~~~---~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p 435 (809)
+..+++.. +.-..+|+.|...+-..|++..|+..|++...-| ...|-.|...|...+.+++|+..+.+.... .|
T Consensus 207 YlkAi~~q-p~fAiawsnLg~~f~~~Gei~~aiq~y~eAvkldP~f~dAYiNLGnV~ke~~~~d~Avs~Y~rAl~l--rp 283 (966)
T KOG4626|consen 207 YLKAIETQ-PCFAIAWSNLGCVFNAQGEIWLAIQHYEEAVKLDPNFLDAYINLGNVYKEARIFDRAVSCYLRALNL--RP 283 (966)
T ss_pred HHHHHhhC-CceeeeehhcchHHhhcchHHHHHHHHHHhhcCCCcchHHHhhHHHHHHHHhcchHHHHHHHHHHhc--CC
Confidence 88887764 3345678888888999999999999999987643 357888888999999999999999887754 56
Q ss_pred C-HhHHHHHHHHHhcccchhHHHHHHHHHHHhCCCCChhHHhHHHHHHHhcCCHHHHHHHHHhcC--CC-CeeechHHHH
Q 003584 436 D-HVVVSSILSACAELTVLEFGQQVHAVFLKSGGCSSLSVDNSLVLVYAKCGCINDANRVFDSMH--TR-DVITWTALIM 511 (809)
Q Consensus 436 ~-~~t~~~ll~a~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~y~k~g~~~~A~~~~~~~~--~~-~~~~~~~li~ 511 (809)
+ .+.+..+...|-..|.++.|...+++.+... +.-...|+.|..++-..|++.+|...+++.. .| ...+.+.|..
T Consensus 284 n~A~a~gNla~iYyeqG~ldlAI~~Ykral~~~-P~F~~Ay~NlanALkd~G~V~ea~~cYnkaL~l~p~hadam~NLgn 362 (966)
T KOG4626|consen 284 NHAVAHGNLACIYYEQGLLDLAIDTYKRALELQ-PNFPDAYNNLANALKDKGSVTEAVDCYNKALRLCPNHADAMNNLGN 362 (966)
T ss_pred cchhhccceEEEEeccccHHHHHHHHHHHHhcC-CCchHHHhHHHHHHHhccchHHHHHHHHHHHHhCCccHHHHHHHHH
Confidence 5 4456666666788899999999999988765 3446788999999999999999999999876 33 4567889999
Q ss_pred HHHhcCChHHHHHHHHHHHHCCCCCCH-HHHHHHHHHHHccCCHHHHHHHHHHhHHhhCCCCCh-HHHHHHHHHHhhcCC
Q 003584 512 GCAQNGKGKEALQFYDQMLARGTKPDY-ITFVGLLFACSHAGLAENARWYFESMDKVYGIKPGP-DHYACMIDLLGRSGK 589 (809)
Q Consensus 512 ~~~~~g~~~~A~~l~~~m~~~g~~pd~-~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~~-~~~~~li~~~~~~g~ 589 (809)
.|...|.+++|..+|....+ +.|.- ..++.|...|-+.|++++|+..+++.. .+.|+. ..|+.|...|-..|+
T Consensus 363 i~~E~~~~e~A~~ly~~al~--v~p~~aaa~nNLa~i~kqqgnl~~Ai~~Ykeal---rI~P~fAda~~NmGnt~ke~g~ 437 (966)
T KOG4626|consen 363 IYREQGKIEEATRLYLKALE--VFPEFAAAHNNLASIYKQQGNLDDAIMCYKEAL---RIKPTFADALSNMGNTYKEMGD 437 (966)
T ss_pred HHHHhccchHHHHHHHHHHh--hChhhhhhhhhHHHHHHhcccHHHHHHHHHHHH---hcCchHHHHHHhcchHHHHhhh
Confidence 99999999999999999988 67776 489999999999999999999998876 788875 789999999999999
Q ss_pred HHHHHHHHHhCcC-CCC-HHHHHHHHHHHHhcCChhHHHHHHHHHhccCCCCCccHHhHhhhhhhcCChhHHHHHHHH
Q 003584 590 LIEAKALLDQMVG-EPD-ATVWKALLSACRVHGDLELGERAANNLFELEPMNAMPYVQLSNMYSTAGKWEDAARVRKL 665 (809)
Q Consensus 590 ~~eA~~~~~~m~~-~p~-~~~~~~ll~a~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~ 665 (809)
.++|...+.+... .|. +...+.|.+.|...|++.+|+..|+.+++++|+.+.+|..++.++---.+|.+=.+.+++
T Consensus 438 v~~A~q~y~rAI~~nPt~AeAhsNLasi~kDsGni~~AI~sY~~aLklkPDfpdA~cNllh~lq~vcdw~D~d~~~~k 515 (966)
T KOG4626|consen 438 VSAAIQCYTRAIQINPTFAEAHSNLASIYKDSGNIPEAIQSYRTALKLKPDFPDAYCNLLHCLQIVCDWTDYDKRMKK 515 (966)
T ss_pred HHHHHHHHHHHHhcCcHHHHHHhhHHHHhhccCCcHHHHHHHHHHHccCCCCchhhhHHHHHHHHHhcccchHHHHHH
Confidence 9999999988774 454 348999999999999999999999999999999999999999888877788774444433
No 15
>KOG4626 consensus O-linked N-acetylglucosamine transferase OGT [Carbohydrate transport and metabolism; Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=99.86 E-value=2e-19 Score=184.03 Aligned_cols=418 Identities=13% Similarity=0.120 Sum_probs=334.0
Q ss_pred HHHHHhccCChHHHHHHHHHHHHhCCCCchhHHHHHHHHHHhCCChHHHHHHHhccC---CCCeeeHHHHHHHHHhcCCh
Q 003584 241 ILTACAAVSARDFGAQVHGCILSSGFEANVYVQSALIDMYAKCGDLDSARRLLEYSE---IDNEVSWNSMIVGFARQGFH 317 (809)
Q Consensus 241 ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~Li~~y~~~g~~~~A~~~f~~~~---~~~~~~~~~li~~~~~~g~~ 317 (809)
+..-..+.|++++|++.-..+-+.. +.+....-.+-..+....+.+....--.... ..-..+|..+...+-..|++
T Consensus 54 lah~~yq~gd~~~a~~h~nmv~~~d-~t~~~~llll~ai~~q~~r~d~s~a~~~~a~r~~~q~ae~ysn~aN~~kerg~~ 132 (966)
T KOG4626|consen 54 LAHRLYQGGDYKQAEKHCNMVGQED-PTNTERLLLLSAIFFQGSRLDKSSAGSLLAIRKNPQGAEAYSNLANILKERGQL 132 (966)
T ss_pred HHHHHHhccCHHHHHHHHhHhhccC-CCcccceeeehhhhhcccchhhhhhhhhhhhhccchHHHHHHHHHHHHHHhchH
Confidence 3444456688888877555443332 2233333334455666666665443322222 22346788999999999999
Q ss_pred hHHHHHHHHHHHCCCCCCcccHHHHHHHhhcCCChHHHHHHHHHHHHhccCCchHH-HHHHHHHHHhcCCHHHHHHHHhh
Q 003584 318 KEALSLFKKMHARDIKIDDFTYPSVLNCFASNIDLNNAKSVHSLIVKTGFEGYKFV-NNALIDMYAKQGNLDCAFMVFNL 396 (809)
Q Consensus 318 ~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~i~~~~~~~g~~~~~~~-~~~li~~y~~~g~~~~A~~~f~~ 396 (809)
++|+.+++.|.+...+ ....|..+..++...|+.+.|.+.+...++.+ |+... .+-+-......|++++|...+.+
T Consensus 133 ~~al~~y~~aiel~p~-fida~inla~al~~~~~~~~a~~~~~~alqln--P~l~ca~s~lgnLlka~Grl~ea~~cYlk 209 (966)
T KOG4626|consen 133 QDALALYRAAIELKPK-FIDAYINLAAALVTQGDLELAVQCFFEALQLN--PDLYCARSDLGNLLKAEGRLEEAKACYLK 209 (966)
T ss_pred HHHHHHHHHHHhcCch-hhHHHhhHHHHHHhcCCCcccHHHHHHHHhcC--cchhhhhcchhHHHHhhcccchhHHHHHH
Confidence 9999999999986322 45678999999999999999999999988764 54443 34455556668999999999988
Q ss_pred cCCCC---HhHHHHHHHHHHhcCCHHHHHHHHHHHhhcCCccC-HhHHHHHHHHHhcccchhHHHHHHHHHHHhCCCCCh
Q 003584 397 MQDKD---VISWTSLITGCAYHGSYEEALKYFSDMRISGICPD-HVVVSSILSACAELTVLEFGQQVHAVFLKSGGCSSL 472 (809)
Q Consensus 397 ~~~~~---~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~-~~t~~~ll~a~~~~~~~~~a~~~~~~~~~~g~~~~~ 472 (809)
..+.+ .+.|+.|...+-.+|+..+|+..|++.... .|+ ...|..+-..+...+.++.|...+..+.... +...
T Consensus 210 Ai~~qp~fAiawsnLg~~f~~~Gei~~aiq~y~eAvkl--dP~f~dAYiNLGnV~ke~~~~d~Avs~Y~rAl~lr-pn~A 286 (966)
T KOG4626|consen 210 AIETQPCFAIAWSNLGCVFNAQGEIWLAIQHYEEAVKL--DPNFLDAYINLGNVYKEARIFDRAVSCYLRALNLR-PNHA 286 (966)
T ss_pred HHhhCCceeeeehhcchHHhhcchHHHHHHHHHHhhcC--CCcchHHHhhHHHHHHHHhcchHHHHHHHHHHhcC-Ccch
Confidence 76532 478999999999999999999999999864 565 3467777778888888888888887776544 4456
Q ss_pred hHHhHHHHHHHhcCCHHHHHHHHHhcC--CCC-eeechHHHHHHHhcCChHHHHHHHHHHHHCCCCCCH-HHHHHHHHHH
Q 003584 473 SVDNSLVLVYAKCGCINDANRVFDSMH--TRD-VITWTALIMGCAQNGKGKEALQFYDQMLARGTKPDY-ITFVGLLFAC 548 (809)
Q Consensus 473 ~~~~~li~~y~k~g~~~~A~~~~~~~~--~~~-~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~pd~-~t~~~ll~a~ 548 (809)
.++..|.-.|-..|.+|.|...+++.. +|+ ...|+.|..++-..|+..+|...|.+.+. +.|+. .+.+.|...+
T Consensus 287 ~a~gNla~iYyeqG~ldlAI~~Ykral~~~P~F~~Ay~NlanALkd~G~V~ea~~cYnkaL~--l~p~hadam~NLgni~ 364 (966)
T KOG4626|consen 287 VAHGNLACIYYEQGLLDLAIDTYKRALELQPNFPDAYNNLANALKDKGSVTEAVDCYNKALR--LCPNHADAMNNLGNIY 364 (966)
T ss_pred hhccceEEEEeccccHHHHHHHHHHHHhcCCCchHHHhHHHHHHHhccchHHHHHHHHHHHH--hCCccHHHHHHHHHHH
Confidence 677778888999999999999999887 444 46899999999999999999999999998 56776 4889999999
Q ss_pred HccCCHHHHHHHHHHhHHhhCCCCC-hHHHHHHHHHHhhcCCHHHHHHHHHhCcC-CCCHH-HHHHHHHHHHhcCChhHH
Q 003584 549 SHAGLAENARWYFESMDKVYGIKPG-PDHYACMIDLLGRSGKLIEAKALLDQMVG-EPDAT-VWKALLSACRVHGDLELG 625 (809)
Q Consensus 549 ~~~g~~~~a~~~~~~m~~~~~~~p~-~~~~~~li~~~~~~g~~~eA~~~~~~m~~-~p~~~-~~~~ll~a~~~~g~~~~A 625 (809)
...|.+++|..+|.... .+.|. ....+.|...|-.+|++++|+.-+++... +|+.. .++.+...|...|+.+.|
T Consensus 365 ~E~~~~e~A~~ly~~al---~v~p~~aaa~nNLa~i~kqqgnl~~Ai~~YkealrI~P~fAda~~NmGnt~ke~g~v~~A 441 (966)
T KOG4626|consen 365 REQGKIEEATRLYLKAL---EVFPEFAAAHNNLASIYKQQGNLDDAIMCYKEALRIKPTFADALSNMGNTYKEMGDVSAA 441 (966)
T ss_pred HHhccchHHHHHHHHHH---hhChhhhhhhhhHHHHHHhcccHHHHHHHHHHHHhcCchHHHHHHhcchHHHHhhhHHHH
Confidence 99999999999998766 45565 46788999999999999999999998774 67654 999999999999999999
Q ss_pred HHHHHHHhccCCCCCccHHhHhhhhhhcCChhHHHHHHHHHHhCC
Q 003584 626 ERAANNLFELEPMNAMPYVQLSNMYSTAGKWEDAARVRKLMKSRG 670 (809)
Q Consensus 626 ~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~ 670 (809)
.+.+.+++..+|.-+.++..|+.+|..+|+..+|+.-++......
T Consensus 442 ~q~y~rAI~~nPt~AeAhsNLasi~kDsGni~~AI~sY~~aLklk 486 (966)
T KOG4626|consen 442 IQCYTRAIQINPTFAEAHSNLASIYKDSGNIPEAIQSYRTALKLK 486 (966)
T ss_pred HHHHHHHHhcCcHHHHHHhhHHHHhhccCCcHHHHHHHHHHHccC
Confidence 999999999999999999999999999999999999999887543
No 16
>KOG2002 consensus TPR-containing nuclear phosphoprotein that regulates K(+) uptake [Inorganic ion transport and metabolism]
Probab=99.84 E-value=1.1e-16 Score=173.37 Aligned_cols=618 Identities=13% Similarity=0.064 Sum_probs=429.1
Q ss_pred CCCcchHHHHHHHHhcCCChHHHHHHHHhcCC--------CCc---chHHHHHHHHHcc-----------CChhHHHHHh
Q 003584 33 VKPASDLNRALVDFSNSGEIDEAGQLFEKMSD--------RDG---FTWNTMIAAYANS-----------GRLREAKKLF 90 (809)
Q Consensus 33 ~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~--------~~~---~~~~~li~~~~~~-----------g~~~~A~~~f 90 (809)
..|-..|..+...|...|..+++..+++.+.. ++. ..++.|...|+.. ..+..|..+|
T Consensus 38 ~a~le~wi~~AleYy~~gk~eefi~iLE~g~~~~~~~y~d~~~~~~~a~~~laay~s~~a~kek~~~~k~e~~~~at~~~ 117 (1018)
T KOG2002|consen 38 QAPLEAWIEIALEYYKQGKTEEFIKILESGLIDANEEYADVKSDQMKALDILAAYYSQLAMKEKKKDEKDELFDKATLLF 117 (1018)
T ss_pred cCchhHHHHHHHHHHhcccHHHHHHHHHhhhhcccchhcchHHHHHHHHHHHHHHHHHHHHHHHhcchhHHHHHHHHHHh
Confidence 44455677788889999999999999999872 221 1233333333222 1244555666
Q ss_pred hhCCCCCcchHHHHH---HHHHcCCC--chhHHHHHHHHHHcCCCCCcccHHHHHHHhh--cCCCchHHHHHHHHHHHhC
Q 003584 91 NETPFKNFFTWSSLI---YGYSNYGL--DIEAFELFWQMQLEGYRPSQYTLDNVLRLCS--LKGLLQRGEQFHGYAIKTC 163 (809)
Q Consensus 91 ~~~~~~~~~~~~~li---~~~~~~g~--~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~--~~~~~~~a~~~~~~~~~~g 163 (809)
+....-+...+..++ ..|...|. .+.|...|....+.. |+.. ...+.++|. ..+++..+..++..++...
T Consensus 118 ~~A~ki~m~~~~~l~~~~~~~l~~~~~~~~~A~a~F~~Vl~~s--p~Ni-l~LlGkA~i~ynkkdY~~al~yyk~al~in 194 (1018)
T KOG2002|consen 118 DLADKIDMYEDSHLLVQRGFLLLEGDKSMDDADAQFHFVLKQS--PDNI-LALLGKARIAYNKKDYRGALKYYKKALRIN 194 (1018)
T ss_pred hHHHHhhccCcchhhhhhhhhhhcCCccHHHHHHHHHHHHhhC--Ccch-HHHHHHHHHHhccccHHHHHHHHHHHHhcC
Confidence 543332222222221 12333343 488999998888743 4433 233456665 5679999999999977664
Q ss_pred --CCCchHHHHHHHHhhhcCCChhHHHHHhhhCCCCCCcccHHHHHHHHh------hCCChHHHHHHHHHHHHCCCCCCc
Q 003584 164 --FDLNAFVVTGLVDMYAKCKCIFEAEYLFKMFPDGKNHVAWTTMITGYS------QNGYGFKAIECFRDMRVEGVESNQ 235 (809)
Q Consensus 164 --~~~~~~~~~~li~~y~~~g~~~~A~~~f~~~~~~~~~~~~~~li~~~~------~~g~~~~A~~l~~~m~~~g~~p~~ 235 (809)
..+|+.+. +-..+.++|+.+.|...|.+..+ -|+.+-++++.... ....+..++.++...-... .-|+
T Consensus 195 p~~~aD~rIg--ig~Cf~kl~~~~~a~~a~~ralq-Ldp~~v~alv~L~~~~l~~~d~~s~~~~~~ll~~ay~~n-~~nP 270 (1018)
T KOG2002|consen 195 PACKADVRIG--IGHCFWKLGMSEKALLAFERALQ-LDPTCVSALVALGEVDLNFNDSDSYKKGVQLLQRAYKEN-NENP 270 (1018)
T ss_pred cccCCCccch--hhhHHHhccchhhHHHHHHHHHh-cChhhHHHHHHHHHHHHHccchHHHHHHHHHHHHHHhhc-CCCc
Confidence 35565543 33567799999999999998877 66655555553221 1223455666665554332 3466
Q ss_pred chHHHHHHHHhccCChHHHHHHHHHHHHhCCCCc--hhHHHHHHHHHHhCCChHHHHHHHhccCC--CC--eeeHHHHHH
Q 003584 236 FTFPSILTACAAVSARDFGAQVHGCILSSGFEAN--VYVQSALIDMYAKCGDLDSARRLLEYSEI--DN--EVSWNSMIV 309 (809)
Q Consensus 236 ~t~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~--~~~~~~Li~~y~~~g~~~~A~~~f~~~~~--~~--~~~~~~li~ 309 (809)
+..+.|.+-+.-.|+++.+..+...++....... ...|--+..+|-..|++++|...|..... +| +..+--+..
T Consensus 271 ~~l~~LAn~fyfK~dy~~v~~la~~ai~~t~~~~~~aes~Y~~gRs~Ha~Gd~ekA~~yY~~s~k~~~d~~~l~~~GlgQ 350 (1018)
T KOG2002|consen 271 VALNHLANHFYFKKDYERVWHLAEHAIKNTENKSIKAESFYQLGRSYHAQGDFEKAFKYYMESLKADNDNFVLPLVGLGQ 350 (1018)
T ss_pred HHHHHHHHHHhhcccHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHhhccHHHHHHHHHHHHccCCCCccccccchhH
Confidence 7788888889999999999999999988763222 23467789999999999999999966543 22 344566888
Q ss_pred HHHhcCChhHHHHHHHHHHHCCCCCC-cccHHHHHHHhhcCC----ChHHHHHHHHHHHHhccCCchHHHHHHHHHHHhc
Q 003584 310 GFARQGFHKEALSLFKKMHARDIKID-DFTYPSVLNCFASNI----DLNNAKSVHSLIVKTGFEGYKFVNNALIDMYAKQ 384 (809)
Q Consensus 310 ~~~~~g~~~~A~~~~~~m~~~g~~p~-~~t~~~ll~~~~~~~----~~~~a~~i~~~~~~~g~~~~~~~~~~li~~y~~~ 384 (809)
.|.+.|+.+.+...|+...+. .|| ..|...+-..|+..+ ..+.|..+.....+.- +.|...|-.+..+|...
T Consensus 351 m~i~~~dle~s~~~fEkv~k~--~p~~~etm~iLG~Lya~~~~~~~~~d~a~~~l~K~~~~~-~~d~~a~l~laql~e~~ 427 (1018)
T KOG2002|consen 351 MYIKRGDLEESKFCFEKVLKQ--LPNNYETMKILGCLYAHSAKKQEKRDKASNVLGKVLEQT-PVDSEAWLELAQLLEQT 427 (1018)
T ss_pred HHHHhchHHHHHHHHHHHHHh--CcchHHHHHHHHhHHHhhhhhhHHHHHHHHHHHHHHhcc-cccHHHHHHHHHHHHhc
Confidence 999999999999999999876 344 455555555555554 4566666666666554 56677777777777655
Q ss_pred CCH------HHHHHHHhhc-CCCCHhHHHHHHHHHHhcCCHHHHHHHHHHHhhc---CCccCH-----hH-HHHHHHHHh
Q 003584 385 GNL------DCAFMVFNLM-QDKDVISWTSLITGCAYHGSYEEALKYFSDMRIS---GICPDH-----VV-VSSILSACA 448 (809)
Q Consensus 385 g~~------~~A~~~f~~~-~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~---g~~p~~-----~t-~~~ll~a~~ 448 (809)
.-+ ..|..++..- ....+...|.+...+...|++++|...|.+.... ...+|. .| --.+.....
T Consensus 428 d~~~sL~~~~~A~d~L~~~~~~ip~E~LNNvaslhf~~g~~~~A~~~f~~A~~~~~~~~n~de~~~~~lt~~YNlarl~E 507 (1018)
T KOG2002|consen 428 DPWASLDAYGNALDILESKGKQIPPEVLNNVASLHFRLGNIEKALEHFKSALGKLLEVANKDEGKSTNLTLKYNLARLLE 507 (1018)
T ss_pred ChHHHHHHHHHHHHHHHHcCCCCCHHHHHhHHHHHHHhcChHHHHHHHHHHhhhhhhhcCccccccchhHHHHHHHHHHH
Confidence 443 3344333322 2356778899999999999999999999988764 223333 22 222334455
Q ss_pred cccchhHHHHHHHHHHHhCCCCChhHHhHHHHHHHhc-------CCHHHHHHHHHhcC---CCCeeechHHHHHHHhcCC
Q 003584 449 ELTVLEFGQQVHAVFLKSGGCSSLSVDNSLVLVYAKC-------GCINDANRVFDSMH---TRDVITWTALIMGCAQNGK 518 (809)
Q Consensus 449 ~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~y~k~-------g~~~~A~~~~~~~~---~~~~~~~~~li~~~~~~g~ 518 (809)
..++.+.|.+.+..+++... ..|++|.+. +...+|...+.... +.|+..|+-+...+.....
T Consensus 508 ~l~~~~~A~e~Yk~Ilkehp--------~YId~ylRl~~ma~~k~~~~ea~~~lk~~l~~d~~np~arsl~G~~~l~k~~ 579 (1018)
T KOG2002|consen 508 ELHDTEVAEEMYKSILKEHP--------GYIDAYLRLGCMARDKNNLYEASLLLKDALNIDSSNPNARSLLGNLHLKKSE 579 (1018)
T ss_pred hhhhhhHHHHHHHHHHHHCc--------hhHHHHHHhhHHHHhccCcHHHHHHHHHHHhcccCCcHHHHHHHHHHHhhhh
Confidence 67799999999999988652 345555554 56678888888776 4567778888878888888
Q ss_pred hHHHHHHHHHHHHCC-CCCCHHHHHHHHHHHHc------------cCCHHHHHHHHHHhHHhhCCCCChHHHHHHHHHHh
Q 003584 519 GKEALQFYDQMLARG-TKPDYITFVGLLFACSH------------AGLAENARWYFESMDKVYGIKPGPDHYACMIDLLG 585 (809)
Q Consensus 519 ~~~A~~l~~~m~~~g-~~pd~~t~~~ll~a~~~------------~g~~~~a~~~~~~m~~~~~~~p~~~~~~~li~~~~ 585 (809)
+..|.+-|....+.- ..+|..+..+|.+.|.+ .+..++|+++|....+ .-+.|...-+.+.-.++
T Consensus 580 ~~~a~k~f~~i~~~~~~~~D~YsliaLGN~~~~~l~~~~rn~ek~kk~~~KAlq~y~kvL~--~dpkN~yAANGIgiVLA 657 (1018)
T KOG2002|consen 580 WKPAKKKFETILKKTSTKTDAYSLIALGNVYIQALHNPSRNPEKEKKHQEKALQLYGKVLR--NDPKNMYAANGIGIVLA 657 (1018)
T ss_pred hcccccHHHHHHhhhccCCchhHHHHhhHHHHHHhcccccChHHHHHHHHHHHHHHHHHHh--cCcchhhhccchhhhhh
Confidence 888888777766532 34677888888876643 2356778888877664 23346677778888999
Q ss_pred hcCCHHHHHHHHHhCcCC--CCHHHHHHHHHHHHhcCChhHHHHHHHHHhcc--CCCCCccHHhHhhhhhhcCChhHHHH
Q 003584 586 RSGKLIEAKALLDQMVGE--PDATVWKALLSACRVHGDLELGERAANNLFEL--EPMNAMPYVQLSNMYSTAGKWEDAAR 661 (809)
Q Consensus 586 ~~g~~~eA~~~~~~m~~~--p~~~~~~~ll~a~~~~g~~~~A~~~~~~~~~~--~p~~~~~~~~l~~~~~~~g~~~~A~~ 661 (809)
..|++.+|.++|.+.... .+..+|-.+...|...|++..|+++|+..+.. ..+++.....|+.++...|+|.+|.+
T Consensus 658 ~kg~~~~A~dIFsqVrEa~~~~~dv~lNlah~~~e~~qy~~AIqmYe~~lkkf~~~~~~~vl~~Lara~y~~~~~~eak~ 737 (1018)
T KOG2002|consen 658 EKGRFSEARDIFSQVREATSDFEDVWLNLAHCYVEQGQYRLAIQMYENCLKKFYKKNRSEVLHYLARAWYEAGKLQEAKE 737 (1018)
T ss_pred hccCchHHHHHHHHHHHHHhhCCceeeeHHHHHHHHHHHHHHHHHHHHHHHHhcccCCHHHHHHHHHHHHHhhhHHHHHH
Confidence 999999999999988752 35678999999999999999999999988764 34577888999999999999999999
Q ss_pred HHHHHHhCC
Q 003584 662 VRKLMKSRG 670 (809)
Q Consensus 662 ~~~~m~~~~ 670 (809)
.........
T Consensus 738 ~ll~a~~~~ 746 (1018)
T KOG2002|consen 738 ALLKARHLA 746 (1018)
T ss_pred HHHHHHHhC
Confidence 988776553
No 17
>TIGR00990 3a0801s09 mitochondrial precursor proteins import receptor (72 kDa mitochondrial outermembrane protein) (mitochondrial import receptor for the ADP/ATP carrier) (translocase of outermembrane tom70).
Probab=99.82 E-value=6.1e-17 Score=185.12 Aligned_cols=418 Identities=13% Similarity=0.031 Sum_probs=254.9
Q ss_pred HHHHHHHHhhCCChHHHHHHHHHHHHCCCCCCcchHHHHHHHHhccCChHHHHHHHHHHHHhCCCCchhHHHHHHHHHHh
Q 003584 203 WTTMITGYSQNGYGFKAIECFRDMRVEGVESNQFTFPSILTACAAVSARDFGAQVHGCILSSGFEANVYVQSALIDMYAK 282 (809)
Q Consensus 203 ~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~Li~~y~~ 282 (809)
+......+.+.|++++|++.|++..+ +.|+...|..+..++...|++++|...+...++.. +.+...+..+..+|..
T Consensus 130 ~k~~G~~~~~~~~~~~Ai~~y~~al~--~~p~~~~~~n~a~~~~~l~~~~~Ai~~~~~al~l~-p~~~~a~~~~a~a~~~ 206 (615)
T TIGR00990 130 LKEKGNKAYRNKDFNKAIKLYSKAIE--CKPDPVYYSNRAACHNALGDWEKVVEDTTAALELD-PDYSKALNRRANAYDG 206 (615)
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHh--cCCchHHHHHHHHHHHHhCCHHHHHHHHHHHHHcC-CCCHHHHHHHHHHHHH
Confidence 44555667778888888888887765 35666667777777777777777777777777664 3345566667777777
Q ss_pred CCChHHHHHHHhccCCCCe---eeHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCcccHHHHHHHhhcCCChHHHHHHH
Q 003584 283 CGDLDSARRLLEYSEIDNE---VSWNSMIVGFARQGFHKEALSLFKKMHARDIKIDDFTYPSVLNCFASNIDLNNAKSVH 359 (809)
Q Consensus 283 ~g~~~~A~~~f~~~~~~~~---~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~i~ 359 (809)
.|++++|..-|......+. .....++..+.. ..+.....+..+.. .++......+ ..+.
T Consensus 207 lg~~~eA~~~~~~~~~~~~~~~~~~~~~~~~~l~----~~a~~~~~~~l~~~-~~~~~~~~~~-~~~~------------ 268 (615)
T TIGR00990 207 LGKYADALLDLTASCIIDGFRNEQSAQAVERLLK----KFAESKAKEILETK-PENLPSVTFV-GNYL------------ 268 (615)
T ss_pred cCCHHHHHHHHHHHHHhCCCccHHHHHHHHHHHH----HHHHHHHHHHHhcC-CCCCCCHHHH-HHHH------------
Confidence 7777777766543321111 111111111111 11222222222211 1111111111 1111
Q ss_pred HHHHHhccCCchHHHHHHHHHHHhcCCHHHHHHHHhhcCCCCH---hHHHHHHHH---HHhcCCHHHHHHHHHHHhhcC-
Q 003584 360 SLIVKTGFEGYKFVNNALIDMYAKQGNLDCAFMVFNLMQDKDV---ISWTSLITG---CAYHGSYEEALKYFSDMRISG- 432 (809)
Q Consensus 360 ~~~~~~g~~~~~~~~~~li~~y~~~g~~~~A~~~f~~~~~~~~---~~~~~li~~---~~~~g~~~~A~~~~~~m~~~g- 432 (809)
.....+.+..-++...+.+. ..+..+... ....+++++|++.|++..+.+
T Consensus 269 -----------------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~e~~~~~~y~~A~~~~~~al~~~~ 325 (615)
T TIGR00990 269 -----------------------QSFRPKPRPAGLEDSNELDEETGNGQLQLGLKSPESKADESYEEAARAFEKALDLGK 325 (615)
T ss_pred -----------------------HHccCCcchhhhhcccccccccccchHHHHHHHHHhhhhhhHHHHHHHHHHHHhcCC
Confidence 00000000000110000000 000000000 012345666666666665543
Q ss_pred CccC-HhHHHHHHHHHhcccchhHHHHHHHHHHHhCCCCChhHHhHHHHHHHhcCCHHHHHHHHHhcC---CCCeeechH
Q 003584 433 ICPD-HVVVSSILSACAELTVLEFGQQVHAVFLKSGGCSSLSVDNSLVLVYAKCGCINDANRVFDSMH---TRDVITWTA 508 (809)
Q Consensus 433 ~~p~-~~t~~~ll~a~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~y~k~g~~~~A~~~~~~~~---~~~~~~~~~ 508 (809)
..|+ ...+..+...+...|++++|...+..+++.. +.....+..+...|...|++++|...|++.. ..+...|..
T Consensus 326 ~~~~~a~a~~~lg~~~~~~g~~~eA~~~~~kal~l~-P~~~~~~~~la~~~~~~g~~~eA~~~~~~al~~~p~~~~~~~~ 404 (615)
T TIGR00990 326 LGEKEAIALNLRGTFKCLKGKHLEALADLSKSIELD-PRVTQSYIKRASMNLELGDPDKAEEDFDKALKLNSEDPDIYYH 404 (615)
T ss_pred CChhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC-CCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHH
Confidence 2232 2234444444555666666666666665543 2334456667777888888888888888765 235667888
Q ss_pred HHHHHHhcCChHHHHHHHHHHHHCCCCCC-HHHHHHHHHHHHccCCHHHHHHHHHHhHHhhCCCCChHHHHHHHHHHhhc
Q 003584 509 LIMGCAQNGKGKEALQFYDQMLARGTKPD-YITFVGLLFACSHAGLAENARWYFESMDKVYGIKPGPDHYACMIDLLGRS 587 (809)
Q Consensus 509 li~~~~~~g~~~~A~~l~~~m~~~g~~pd-~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~~~~~~~li~~~~~~ 587 (809)
+...|...|++++|+..|++.++. .|+ ...+..+..++.+.|++++|...|+...+. .+.+...|..+..+|...
T Consensus 405 lg~~~~~~g~~~~A~~~~~kal~l--~P~~~~~~~~la~~~~~~g~~~eA~~~~~~al~~--~P~~~~~~~~lg~~~~~~ 480 (615)
T TIGR00990 405 RAQLHFIKGEFAQAGKDYQKSIDL--DPDFIFSHIQLGVTQYKEGSIASSMATFRRCKKN--FPEAPDVYNYYGELLLDQ 480 (615)
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHc--CccCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHh--CCCChHHHHHHHHHHHHc
Confidence 888889999999999999998884 554 456777888888999999999999988753 233467888889999999
Q ss_pred CCHHHHHHHHHhCcC-CCCH-H-------HHHHHHHHHHhcCChhHHHHHHHHHhccCCCCCccHHhHhhhhhhcCChhH
Q 003584 588 GKLIEAKALLDQMVG-EPDA-T-------VWKALLSACRVHGDLELGERAANNLFELEPMNAMPYVQLSNMYSTAGKWED 658 (809)
Q Consensus 588 g~~~eA~~~~~~m~~-~p~~-~-------~~~~ll~a~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~ 658 (809)
|++++|.+.|++... .|+. . .++..+..+...|++++|+..++++++++|++...+..++.+|...|++++
T Consensus 481 g~~~~A~~~~~~Al~l~p~~~~~~~~~~~l~~~a~~~~~~~~~~~eA~~~~~kAl~l~p~~~~a~~~la~~~~~~g~~~e 560 (615)
T TIGR00990 481 NKFDEAIEKFDTAIELEKETKPMYMNVLPLINKALALFQWKQDFIEAENLCEKALIIDPECDIAVATMAQLLLQQGDVDE 560 (615)
T ss_pred cCHHHHHHHHHHHHhcCCccccccccHHHHHHHHHHHHHHhhhHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHccCHHH
Confidence 999999999988663 2321 1 122222334456999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHhC
Q 003584 659 AARVRKLMKSR 669 (809)
Q Consensus 659 A~~~~~~m~~~ 669 (809)
|.+.+++..+.
T Consensus 561 Ai~~~e~A~~l 571 (615)
T TIGR00990 561 ALKLFERAAEL 571 (615)
T ss_pred HHHHHHHHHHH
Confidence 99999988654
No 18
>PRK11788 tetratricopeptide repeat protein; Provisional
Probab=99.82 E-value=5.9e-18 Score=183.66 Aligned_cols=288 Identities=13% Similarity=0.096 Sum_probs=194.8
Q ss_pred HhcCCHHHHHHHHhhcCCC---CHhHHHHHHHHHHhcCCHHHHHHHHHHHhhcCCccC---HhHHHHHHHHHhcccchhH
Q 003584 382 AKQGNLDCAFMVFNLMQDK---DVISWTSLITGCAYHGSYEEALKYFSDMRISGICPD---HVVVSSILSACAELTVLEF 455 (809)
Q Consensus 382 ~~~g~~~~A~~~f~~~~~~---~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~---~~t~~~ll~a~~~~~~~~~ 455 (809)
...|++++|...|.++.+. +..+|..+...|.+.|++++|..+++.+...+..++ ..++..+...+...|+++.
T Consensus 46 ~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~~~~~La~~~~~~g~~~~ 125 (389)
T PRK11788 46 LLNEQPDKAIDLFIEMLKVDPETVELHLALGNLFRRRGEVDRAIRIHQNLLSRPDLTREQRLLALQELGQDYLKAGLLDR 125 (389)
T ss_pred HhcCChHHHHHHHHHHHhcCcccHHHHHHHHHHHHHcCcHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHHHCCCHHH
Confidence 3445555555555554431 233445555555555555555555555544321111 1233444445555555555
Q ss_pred HHHHHHHHHHhCCCCChhHHhHHHHHHHhcCCHHHHHHHHHhcCCCCe--------eechHHHHHHHhcCChHHHHHHHH
Q 003584 456 GQQVHAVFLKSGGCSSLSVDNSLVLVYAKCGCINDANRVFDSMHTRDV--------ITWTALIMGCAQNGKGKEALQFYD 527 (809)
Q Consensus 456 a~~~~~~~~~~g~~~~~~~~~~li~~y~k~g~~~~A~~~~~~~~~~~~--------~~~~~li~~~~~~g~~~~A~~l~~ 527 (809)
|..++..+.+.. +.+..+++.++.+|.+.|++++|.+.|+.+.+.+. ..|..+...+...|++++|...|+
T Consensus 126 A~~~~~~~l~~~-~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~ 204 (389)
T PRK11788 126 AEELFLQLVDEG-DFAEGALQQLLEIYQQEKDWQKAIDVAERLEKLGGDSLRVEIAHFYCELAQQALARGDLDAARALLK 204 (389)
T ss_pred HHHHHHHHHcCC-cchHHHHHHHHHHHHHhchHHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHHHHhCCCHHHHHHHHH
Confidence 555555554432 33455666677777777777777777777653211 134556667788899999999999
Q ss_pred HHHHCCCCCC-HHHHHHHHHHHHccCCHHHHHHHHHHhHHhhCCCCC--hHHHHHHHHHHhhcCCHHHHHHHHHhCcC-C
Q 003584 528 QMLARGTKPD-YITFVGLLFACSHAGLAENARWYFESMDKVYGIKPG--PDHYACMIDLLGRSGKLIEAKALLDQMVG-E 603 (809)
Q Consensus 528 ~m~~~g~~pd-~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~--~~~~~~li~~~~~~g~~~eA~~~~~~m~~-~ 603 (809)
++.+. .|+ ..++..+...+.+.|++++|.++++.+.+. .|+ ...+..++.+|.+.|++++|...++++.. .
T Consensus 205 ~al~~--~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~---~p~~~~~~~~~l~~~~~~~g~~~~A~~~l~~~~~~~ 279 (389)
T PRK11788 205 KALAA--DPQCVRASILLGDLALAQGDYAAAIEALERVEEQ---DPEYLSEVLPKLMECYQALGDEAEGLEFLRRALEEY 279 (389)
T ss_pred HHHhH--CcCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHH---ChhhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC
Confidence 88874 344 446777788888899999999999888753 333 45678888999999999999999988775 5
Q ss_pred CCHHHHHHHHHHHHhcCChhHHHHHHHHHhccCCCCCccHHhHhhhhhh---cCChhHHHHHHHHHHhCCCccCCc
Q 003584 604 PDATVWKALLSACRVHGDLELGERAANNLFELEPMNAMPYVQLSNMYST---AGKWEDAARVRKLMKSRGIRKEPG 676 (809)
Q Consensus 604 p~~~~~~~ll~a~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~---~g~~~~A~~~~~~m~~~~~~~~~~ 676 (809)
|+...+..++..+...|+.++|...++++++..|++.. +..+...+.. .|+.+++..++++|.+++++++|.
T Consensus 280 p~~~~~~~la~~~~~~g~~~~A~~~l~~~l~~~P~~~~-~~~l~~~~~~~~~~g~~~~a~~~~~~~~~~~~~~~p~ 354 (389)
T PRK11788 280 PGADLLLALAQLLEEQEGPEAAQALLREQLRRHPSLRG-FHRLLDYHLAEAEEGRAKESLLLLRDLVGEQLKRKPR 354 (389)
T ss_pred CCchHHHHHHHHHHHhCCHHHHHHHHHHHHHhCcCHHH-HHHHHHHhhhccCCccchhHHHHHHHHHHHHHhCCCC
Confidence 77777788899999999999999999999999997764 4444444443 569999999999999999988886
No 19
>PRK11788 tetratricopeptide repeat protein; Provisional
Probab=99.81 E-value=6.4e-18 Score=183.38 Aligned_cols=303 Identities=14% Similarity=0.045 Sum_probs=186.8
Q ss_pred HHHHHHHHhhCCChHHHHHHHHHHHHCCCCCCcchHHHHHHHHhccCChHHHHHHHHHHHHhCCCCc---hhHHHHHHHH
Q 003584 203 WTTMITGYSQNGYGFKAIECFRDMRVEGVESNQFTFPSILTACAAVSARDFGAQVHGCILSSGFEAN---VYVQSALIDM 279 (809)
Q Consensus 203 ~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~---~~~~~~Li~~ 279 (809)
+......+...|++++|++.|+++.+.+ +.+..++..+...+...|++++|..+++.+++.+..++ ..++..+...
T Consensus 38 ~y~~g~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~~~~~La~~ 116 (389)
T PRK11788 38 DYFKGLNFLLNEQPDKAIDLFIEMLKVD-PETVELHLALGNLFRRRGEVDRAIRIHQNLLSRPDLTREQRLLALQELGQD 116 (389)
T ss_pred HHHHHHHHHhcCChHHHHHHHHHHHhcC-cccHHHHHHHHHHHHHcCcHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHH
Confidence 3333445677889999999999998753 22344677777778888888888888888877542221 2456777788
Q ss_pred HHhCCChHHHHHHHhccCC---CCeeeHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCcccHHHHHHHhhcCCChHHHH
Q 003584 280 YAKCGDLDSARRLLEYSEI---DNEVSWNSMIVGFARQGFHKEALSLFKKMHARDIKIDDFTYPSVLNCFASNIDLNNAK 356 (809)
Q Consensus 280 y~~~g~~~~A~~~f~~~~~---~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~ 356 (809)
|.+.|++++|..+|+++.. .+..+++.++..+.+.|++++|.+.++++.+.+..++...
T Consensus 117 ~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~------------------ 178 (389)
T PRK11788 117 YLKAGLLDRAEELFLQLVDEGDFAEGALQQLLEIYQQEKDWQKAIDVAERLEKLGGDSLRVE------------------ 178 (389)
T ss_pred HHHCCCHHHHHHHHHHHHcCCcchHHHHHHHHHHHHHhchHHHHHHHHHHHHHhcCCcchHH------------------
Confidence 8888888888888877654 3455677777788888888888888887776543221110
Q ss_pred HHHHHHHHhccCCchHHHHHHHHHHHhcCCHHHHHHHHhhcCC---CCHhHHHHHHHHHHhcCCHHHHHHHHHHHhhcCC
Q 003584 357 SVHSLIVKTGFEGYKFVNNALIDMYAKQGNLDCAFMVFNLMQD---KDVISWTSLITGCAYHGSYEEALKYFSDMRISGI 433 (809)
Q Consensus 357 ~i~~~~~~~g~~~~~~~~~~li~~y~~~g~~~~A~~~f~~~~~---~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~ 433 (809)
....+..+...+.+.|++++|...|+++.+ .+...+..+...|.+.|++++|.++|+++.+.+.
T Consensus 179 -------------~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~p 245 (389)
T PRK11788 179 -------------IAHFYCELAQQALARGDLDAARALLKKALAADPQCVRASILLGDLALAQGDYAAAIEALERVEEQDP 245 (389)
T ss_pred -------------HHHHHHHHHHHHHhCCCHHHHHHHHHHHHhHCcCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCh
Confidence 011233455556666777777777766543 2344666667777777777777777777765431
Q ss_pred ccCHhHHHHHHHHHhcccchhHHHHHHHHHHHhCCCCChhHHhHHHHHHHhcCCHHHHHHHHHhcC--CCCeeechHHHH
Q 003584 434 CPDHVVVSSILSACAELTVLEFGQQVHAVFLKSGGCSSLSVDNSLVLVYAKCGCINDANRVFDSMH--TRDVITWTALIM 511 (809)
Q Consensus 434 ~p~~~t~~~ll~a~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~y~k~g~~~~A~~~~~~~~--~~~~~~~~~li~ 511 (809)
.+...++..+..++...|+.++|.+.+..+.+.. |+...+..++..|.+.|++++|..+|+++. .|+..+++.++.
T Consensus 246 ~~~~~~~~~l~~~~~~~g~~~~A~~~l~~~~~~~--p~~~~~~~la~~~~~~g~~~~A~~~l~~~l~~~P~~~~~~~l~~ 323 (389)
T PRK11788 246 EYLSEVLPKLMECYQALGDEAEGLEFLRRALEEY--PGADLLLALAQLLEEQEGPEAAQALLREQLRRHPSLRGFHRLLD 323 (389)
T ss_pred hhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC--CCchHHHHHHHHHHHhCCHHHHHHHHHHHHHhCcCHHHHHHHHH
Confidence 1112344445555555555555555555544432 333334555666666666666666665544 355555555555
Q ss_pred HHHh---cCChHHHHHHHHHHHHCCCCCCHH
Q 003584 512 GCAQ---NGKGKEALQFYDQMLARGTKPDYI 539 (809)
Q Consensus 512 ~~~~---~g~~~~A~~l~~~m~~~g~~pd~~ 539 (809)
.+.. +|+.++++.+|++|.+.+++|++.
T Consensus 324 ~~~~~~~~g~~~~a~~~~~~~~~~~~~~~p~ 354 (389)
T PRK11788 324 YHLAEAEEGRAKESLLLLRDLVGEQLKRKPR 354 (389)
T ss_pred HhhhccCCccchhHHHHHHHHHHHHHhCCCC
Confidence 5443 345666666666666655555544
No 20
>PRK15174 Vi polysaccharide export protein VexE; Provisional
Probab=99.80 E-value=3.5e-16 Score=178.10 Aligned_cols=368 Identities=11% Similarity=-0.008 Sum_probs=284.0
Q ss_pred HhCCChHHHHHHHhccCC------CCeeeHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCcccHHHHHHHhhcCCChHH
Q 003584 281 AKCGDLDSARRLLEYSEI------DNEVSWNSMIVGFARQGFHKEALSLFKKMHARDIKIDDFTYPSVLNCFASNIDLNN 354 (809)
Q Consensus 281 ~~~g~~~~A~~~f~~~~~------~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~ 354 (809)
.+..+++.-.-+|..-++ .+..-...++..+.+.|++++|+.+++......+.+.. .+..++.+....|+++.
T Consensus 16 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~l~~~~l~~~p~~~~-~l~~l~~~~l~~g~~~~ 94 (656)
T PRK15174 16 LKQEDWEGLCLYFSQHPEKVRDSAGNEQNIILFAIACLRKDETDVGLTLLSDRVLTAKNGRD-LLRRWVISPLASSQPDA 94 (656)
T ss_pred hhhhchhhHhHHhhcccHhhhhhcccccCHHHHHHHHHhcCCcchhHHHhHHHHHhCCCchh-HHHHHhhhHhhcCCHHH
Confidence 355566666666655443 13334556778888999999999999999887555433 34445566667999999
Q ss_pred HHHHHHHHHHhccCCchHHHHHHHHHHHhcCCHHHHHHHHhhcCC---CCHhHHHHHHHHHHhcCCHHHHHHHHHHHhhc
Q 003584 355 AKSVHSLIVKTGFEGYKFVNNALIDMYAKQGNLDCAFMVFNLMQD---KDVISWTSLITGCAYHGSYEEALKYFSDMRIS 431 (809)
Q Consensus 355 a~~i~~~~~~~g~~~~~~~~~~li~~y~~~g~~~~A~~~f~~~~~---~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~ 431 (809)
|.+.++.+.+.. +.+...+..+...+.+.|++++|...|++... .+...|..+...+...|++++|...++++...
T Consensus 95 A~~~l~~~l~~~-P~~~~a~~~la~~l~~~g~~~~Ai~~l~~Al~l~P~~~~a~~~la~~l~~~g~~~eA~~~~~~~~~~ 173 (656)
T PRK15174 95 VLQVVNKLLAVN-VCQPEDVLLVASVLLKSKQYATVADLAEQAWLAFSGNSQIFALHLRTLVLMDKELQAISLARTQAQE 173 (656)
T ss_pred HHHHHHHHHHhC-CCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHCCChHHHHHHHHHHHHh
Confidence 999999998875 55667788889999999999999999998765 35678889999999999999999999988765
Q ss_pred CCccCHhHHHHHHHHHhcccchhHHHHHHHHHHHhCCCCChhHHhHHHHHHHhcCCHHHHHHHHHhcCC---CCeeechH
Q 003584 432 GICPDHVVVSSILSACAELTVLEFGQQVHAVFLKSGGCSSLSVDNSLVLVYAKCGCINDANRVFDSMHT---RDVITWTA 508 (809)
Q Consensus 432 g~~p~~~t~~~ll~a~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~y~k~g~~~~A~~~~~~~~~---~~~~~~~~ 508 (809)
. |+.......+..+...|++++|...+..+++....++......+...+.+.|++++|...|++... .+...+..
T Consensus 174 ~--P~~~~a~~~~~~l~~~g~~~eA~~~~~~~l~~~~~~~~~~~~~l~~~l~~~g~~~eA~~~~~~al~~~p~~~~~~~~ 251 (656)
T PRK15174 174 V--PPRGDMIATCLSFLNKSRLPEDHDLARALLPFFALERQESAGLAVDTLCAVGKYQEAIQTGESALARGLDGAALRRS 251 (656)
T ss_pred C--CCCHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCcchhHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCCHHHHHH
Confidence 3 333332223345778899999999999887765444455555667888999999999999998763 35567888
Q ss_pred HHHHHHhcCChHH----HHHHHHHHHHCCCCCCH-HHHHHHHHHHHccCCHHHHHHHHHHhHHhhCCCCC-hHHHHHHHH
Q 003584 509 LIMGCAQNGKGKE----ALQFYDQMLARGTKPDY-ITFVGLLFACSHAGLAENARWYFESMDKVYGIKPG-PDHYACMID 582 (809)
Q Consensus 509 li~~~~~~g~~~~----A~~l~~~m~~~g~~pd~-~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~-~~~~~~li~ 582 (809)
+...|...|++++ |+..|++..+. .|+. ..+..+...+...|++++|...++...+. .|+ ...+..+..
T Consensus 252 Lg~~l~~~G~~~eA~~~A~~~~~~Al~l--~P~~~~a~~~lg~~l~~~g~~~eA~~~l~~al~l---~P~~~~a~~~La~ 326 (656)
T PRK15174 252 LGLAYYQSGRSREAKLQAAEHWRHALQF--NSDNVRIVTLYADALIRTGQNEKAIPLLQQSLAT---HPDLPYVRAMYAR 326 (656)
T ss_pred HHHHHHHcCCchhhHHHHHHHHHHHHhh--CCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHh---CCCCHHHHHHHHH
Confidence 8999999999986 89999999984 5654 58888999999999999999999988753 454 456777889
Q ss_pred HHhhcCCHHHHHHHHHhCcC-CCCHHH-HHHHHHHHHhcCChhHHHHHHHHHhccCCCCCccHHhHhhhhhhcCChhHHH
Q 003584 583 LLGRSGKLIEAKALLDQMVG-EPDATV-WKALLSACRVHGDLELGERAANNLFELEPMNAMPYVQLSNMYSTAGKWEDAA 660 (809)
Q Consensus 583 ~~~~~g~~~eA~~~~~~m~~-~p~~~~-~~~ll~a~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~ 660 (809)
+|.+.|++++|.+.++++.. .|+... +..+..++...|+.++|+..++++++..|++. ...+++|.
T Consensus 327 ~l~~~G~~~eA~~~l~~al~~~P~~~~~~~~~a~al~~~G~~deA~~~l~~al~~~P~~~------------~~~~~ea~ 394 (656)
T PRK15174 327 ALRQVGQYTAASDEFVQLAREKGVTSKWNRYAAAALLQAGKTSEAESVFEHYIQARASHL------------PQSFEEGL 394 (656)
T ss_pred HHHHCCCHHHHHHHHHHHHHhCccchHHHHHHHHHHHHCCCHHHHHHHHHHHHHhChhhc------------hhhHHHHH
Confidence 99999999999999998874 466544 44457788999999999999999999999864 24455666
Q ss_pred HHHHHHHhC
Q 003584 661 RVRKLMKSR 669 (809)
Q Consensus 661 ~~~~~m~~~ 669 (809)
..+....+.
T Consensus 395 ~~~~~~~~~ 403 (656)
T PRK15174 395 LALDGQISA 403 (656)
T ss_pred HHHHHHHHh
Confidence 666665543
No 21
>KOG2002 consensus TPR-containing nuclear phosphoprotein that regulates K(+) uptake [Inorganic ion transport and metabolism]
Probab=99.80 E-value=4.3e-15 Score=161.08 Aligned_cols=576 Identities=15% Similarity=0.059 Sum_probs=401.1
Q ss_pred hhHHHHHhhhCCCCCcc-hHHHHHHHH--HcCCCchhHHHHHHHHHHc--CCCCCcccHHHHHHHhhcCCCchHHHHHHH
Q 003584 83 LREAKKLFNETPFKNFF-TWSSLIYGY--SNYGLDIEAFELFWQMQLE--GYRPSQYTLDNVLRLCSLKGLLQRGEQFHG 157 (809)
Q Consensus 83 ~~~A~~~f~~~~~~~~~-~~~~li~~~--~~~g~~~~A~~~~~~m~~~--g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~ 157 (809)
++.|.+.|......++. .--.|..|+ ...+++..|+.+|...... ..+||... .+-..+.+.++.+.|...|.
T Consensus 146 ~~~A~a~F~~Vl~~sp~Nil~LlGkA~i~ynkkdY~~al~yyk~al~inp~~~aD~rI--gig~Cf~kl~~~~~a~~a~~ 223 (1018)
T KOG2002|consen 146 MDDADAQFHFVLKQSPDNILALLGKARIAYNKKDYRGALKYYKKALRINPACKADVRI--GIGHCFWKLGMSEKALLAFE 223 (1018)
T ss_pred HHHHHHHHHHHHhhCCcchHHHHHHHHHHhccccHHHHHHHHHHHHhcCcccCCCccc--hhhhHHHhccchhhHHHHHH
Confidence 58898888876543221 112233333 4578999999999997653 23444432 22244568899999999999
Q ss_pred HHHHhCCCCchHHHHHHHHhhh---c---CCChhHHHHHhhhCCC--CCCcccHHHHHHHHhhCCChHHHHHHHHHHHHC
Q 003584 158 YAIKTCFDLNAFVVTGLVDMYA---K---CKCIFEAEYLFKMFPD--GKNHVAWTTMITGYSQNGYGFKAIECFRDMRVE 229 (809)
Q Consensus 158 ~~~~~g~~~~~~~~~~li~~y~---~---~g~~~~A~~~f~~~~~--~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~ 229 (809)
.+++... ...++++..+. . ...+..+..++...-. +.|++..|.|.+.|.-.|+++.+..+...+...
T Consensus 224 ralqLdp----~~v~alv~L~~~~l~~~d~~s~~~~~~ll~~ay~~n~~nP~~l~~LAn~fyfK~dy~~v~~la~~ai~~ 299 (1018)
T KOG2002|consen 224 RALQLDP----TCVSALVALGEVDLNFNDSDSYKKGVQLLQRAYKENNENPVALNHLANHFYFKKDYERVWHLAEHAIKN 299 (1018)
T ss_pred HHHhcCh----hhHHHHHHHHHHHHHccchHHHHHHHHHHHHHHhhcCCCcHHHHHHHHHHhhcccHHHHHHHHHHHHHh
Confidence 9887652 33333332221 1 2234555555543321 268899999999999999999999999988764
Q ss_pred CCC--CCcchHHHHHHHHhccCChHHHHHHHHHHHHhCCCCchhHHHHHHHHHHhCCChHHHHHHHhccCCC---CeeeH
Q 003584 230 GVE--SNQFTFPSILTACAAVSARDFGAQVHGCILSSGFEANVYVQSALIDMYAKCGDLDSARRLLEYSEID---NEVSW 304 (809)
Q Consensus 230 g~~--p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~Li~~y~~~g~~~~A~~~f~~~~~~---~~~~~ 304 (809)
... .-...|-.+-+++-..|++++|.+.|-+..+..-..-+..+-.|..+|.+.|+++.|...|+.+... +..+.
T Consensus 300 t~~~~~~aes~Y~~gRs~Ha~Gd~ekA~~yY~~s~k~~~d~~~l~~~GlgQm~i~~~dle~s~~~fEkv~k~~p~~~etm 379 (1018)
T KOG2002|consen 300 TENKSIKAESFYQLGRSYHAQGDFEKAFKYYMESLKADNDNFVLPLVGLGQMYIKRGDLEESKFCFEKVLKQLPNNYETM 379 (1018)
T ss_pred hhhhHHHHHHHHHHHHHHHhhccHHHHHHHHHHHHccCCCCccccccchhHHHHHhchHHHHHHHHHHHHHhCcchHHHH
Confidence 311 1234577888899999999999999988887653322455667899999999999999999987643 34455
Q ss_pred HHHHHHHHhcC----ChhHHHHHHHHHHHCCCCCCcccHHHHHHHhhcCCChHHHHHHHHH----HHHhccCCchHHHHH
Q 003584 305 NSMIVGFARQG----FHKEALSLFKKMHARDIKIDDFTYPSVLNCFASNIDLNNAKSVHSL----IVKTGFEGYKFVNNA 376 (809)
Q Consensus 305 ~~li~~~~~~g----~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~i~~~----~~~~g~~~~~~~~~~ 376 (809)
..|...|+..+ ..+.|..++.+..+.- .-|...|..+...+-. ++.......+.. +...+-.+.+.+.|.
T Consensus 380 ~iLG~Lya~~~~~~~~~d~a~~~l~K~~~~~-~~d~~a~l~laql~e~-~d~~~sL~~~~~A~d~L~~~~~~ip~E~LNN 457 (1018)
T KOG2002|consen 380 KILGCLYAHSAKKQEKRDKASNVLGKVLEQT-PVDSEAWLELAQLLEQ-TDPWASLDAYGNALDILESKGKQIPPEVLNN 457 (1018)
T ss_pred HHHHhHHHhhhhhhHHHHHHHHHHHHHHhcc-cccHHHHHHHHHHHHh-cChHHHHHHHHHHHHHHHHcCCCCCHHHHHh
Confidence 56666666665 4466666666665542 2244455555444443 444444555544 445666788889999
Q ss_pred HHHHHHhcCCHHHHHHHHhhcCCC-------CH------hHHHHHHHHHHhcCCHHHHHHHHHHHhhcCCccCHhHHHHH
Q 003584 377 LIDMYAKQGNLDCAFMVFNLMQDK-------DV------ISWTSLITGCAYHGSYEEALKYFSDMRISGICPDHVVVSSI 443 (809)
Q Consensus 377 li~~y~~~g~~~~A~~~f~~~~~~-------~~------~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~l 443 (809)
+...+...|++++|...|+..... |. .+-..+...+-..++.+.|.+.|....+. .|.-++-..-
T Consensus 458 vaslhf~~g~~~~A~~~f~~A~~~~~~~~n~de~~~~~lt~~YNlarl~E~l~~~~~A~e~Yk~Ilke--hp~YId~ylR 535 (1018)
T KOG2002|consen 458 VASLHFRLGNIEKALEHFKSALGKLLEVANKDEGKSTNLTLKYNLARLLEELHDTEVAEEMYKSILKE--HPGYIDAYLR 535 (1018)
T ss_pred HHHHHHHhcChHHHHHHHHHHhhhhhhhcCccccccchhHHHHHHHHHHHhhhhhhHHHHHHHHHHHH--CchhHHHHHH
Confidence 999999999999999999876532 22 12223445555677899999999999876 4654433222
Q ss_pred HH-HHhcccchhHHHHHHHHHHHhCCCCChhHHhHHHHHHHhcCCHHHHHHHHHhcC-----CCCeeechHHHHHHHh--
Q 003584 444 LS-ACAELTVLEFGQQVHAVFLKSGGCSSLSVDNSLVLVYAKCGCINDANRVFDSMH-----TRDVITWTALIMGCAQ-- 515 (809)
Q Consensus 444 l~-a~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~y~k~g~~~~A~~~~~~~~-----~~~~~~~~~li~~~~~-- 515 (809)
+. .....+...++...+..+.... ..++.+++-+.+.|.+...+..|.+-|+.+. .+|..+.-+|.+.|.+
T Consensus 536 l~~ma~~k~~~~ea~~~lk~~l~~d-~~np~arsl~G~~~l~k~~~~~a~k~f~~i~~~~~~~~D~YsliaLGN~~~~~l 614 (1018)
T KOG2002|consen 536 LGCMARDKNNLYEASLLLKDALNID-SSNPNARSLLGNLHLKKSEWKPAKKKFETILKKTSTKTDAYSLIALGNVYIQAL 614 (1018)
T ss_pred hhHHHHhccCcHHHHHHHHHHHhcc-cCCcHHHHHHHHHHHhhhhhcccccHHHHHHhhhccCCchhHHHHhhHHHHHHh
Confidence 22 2223467778888887777644 4566677777779999999988888666554 2355554455554432
Q ss_pred ----------cCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHhHHhhCCCCChHHHHHHHHHHh
Q 003584 516 ----------NGKGKEALQFYDQMLARGTKPDYITFVGLLFACSHAGLAENARWYFESMDKVYGIKPGPDHYACMIDLLG 585 (809)
Q Consensus 516 ----------~g~~~~A~~l~~~m~~~g~~pd~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~~~~~~~li~~~~ 585 (809)
.+..++|+++|.+.+... +-|...-+.+.-.++..|++.+|..+|....+.. .....+|-.+...|.
T Consensus 615 ~~~~rn~ek~kk~~~KAlq~y~kvL~~d-pkN~yAANGIgiVLA~kg~~~~A~dIFsqVrEa~--~~~~dv~lNlah~~~ 691 (1018)
T KOG2002|consen 615 HNPSRNPEKEKKHQEKALQLYGKVLRND-PKNMYAANGIGIVLAEKGRFSEARDIFSQVREAT--SDFEDVWLNLAHCYV 691 (1018)
T ss_pred cccccChHHHHHHHHHHHHHHHHHHhcC-cchhhhccchhhhhhhccCchHHHHHHHHHHHHH--hhCCceeeeHHHHHH
Confidence 345788999999988752 4456677888888999999999999999988752 234456888899999
Q ss_pred hcCCHHHHHHHHHhCcC----CCCHHHHHHHHHHHHhcCChhHHHHHHHHHhccCCCCCccHHhHhhhh-----------
Q 003584 586 RSGKLIEAKALLDQMVG----EPDATVWKALLSACRVHGDLELGERAANNLFELEPMNAMPYVQLSNMY----------- 650 (809)
Q Consensus 586 ~~g~~~eA~~~~~~m~~----~p~~~~~~~ll~a~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~----------- 650 (809)
.+|++-.|+++|+.... +.+..+.+-|..++...|.+.+|.+.+..+..+.|.++..-..++-+.
T Consensus 692 e~~qy~~AIqmYe~~lkkf~~~~~~~vl~~Lara~y~~~~~~eak~~ll~a~~~~p~~~~v~FN~a~v~kkla~s~lr~~ 771 (1018)
T KOG2002|consen 692 EQGQYRLAIQMYENCLKKFYKKNRSEVLHYLARAWYEAGKLQEAKEALLKARHLAPSNTSVKFNLALVLKKLAESILRLE 771 (1018)
T ss_pred HHHHHHHHHHHHHHHHHHhcccCCHHHHHHHHHHHHHhhhHHHHHHHHHHHHHhCCccchHHhHHHHHHHHHHHHHHhcc
Confidence 99999999999987764 356778999999999999999999999999999999988666555433
Q ss_pred --------hhcCChhHHHHHHHHHHhCCCc
Q 003584 651 --------STAGKWEDAARVRKLMKSRGIR 672 (809)
Q Consensus 651 --------~~~g~~~~A~~~~~~m~~~~~~ 672 (809)
...+..++|.++|..|...+-+
T Consensus 772 k~t~eev~~a~~~le~a~r~F~~ls~~~d~ 801 (1018)
T KOG2002|consen 772 KRTLEEVLEAVKELEEARRLFTELSKNGDK 801 (1018)
T ss_pred cccHHHHHHHHHHHHHHHHHHHHHHhcCCC
Confidence 3345667888888888776543
No 22
>PRK10049 pgaA outer membrane protein PgaA; Provisional
Probab=99.80 E-value=8.5e-16 Score=178.84 Aligned_cols=391 Identities=11% Similarity=0.015 Sum_probs=178.3
Q ss_pred ccCChHHHHHHHHHHHHhCCCCchhHHHHHHHHHHhCCChHHHHHHHhccC---CCCeeeHHHHHHHHHhcCChhHHHHH
Q 003584 247 AVSARDFGAQVHGCILSSGFEANVYVQSALIDMYAKCGDLDSARRLLEYSE---IDNEVSWNSMIVGFARQGFHKEALSL 323 (809)
Q Consensus 247 ~~~~~~~a~~~~~~~~~~g~~~~~~~~~~Li~~y~~~g~~~~A~~~f~~~~---~~~~~~~~~li~~~~~~g~~~~A~~~ 323 (809)
..|+.++|.+++....... +.+...+..+...+.+.|++++|..+|++.. ..+...+..++..+...|++++|+..
T Consensus 27 ~~g~~~~A~~~~~~~~~~~-~~~a~~~~~lA~~~~~~g~~~~A~~~~~~al~~~P~~~~a~~~la~~l~~~g~~~eA~~~ 105 (765)
T PRK10049 27 WAGQDAEVITVYNRYRVHM-QLPARGYAAVAVAYRNLKQWQNSLTLWQKALSLEPQNDDYQRGLILTLADAGQYDEALVK 105 (765)
T ss_pred HcCCHHHHHHHHHHHHhhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHH
Confidence 3344444444444333311 2233344455555555555555555554421 22333444455555555555555555
Q ss_pred HHHHHHCCCCCCcccHHHHHHHhhcCCChHHHHHHHHHHHHhccCCchHHHHHHHHHHHhcCCHHHHHHHHhhcCCCCHh
Q 003584 324 FKKMHARDIKIDDFTYPSVLNCFASNIDLNNAKSVHSLIVKTGFEGYKFVNNALIDMYAKQGNLDCAFMVFNLMQDKDVI 403 (809)
Q Consensus 324 ~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~i~~~~~~~g~~~~~~~~~~li~~y~~~g~~~~A~~~f~~~~~~~~~ 403 (809)
+++..+.. |+...+..+..++...|+.++|...++.+.+.. +.+..++..+..++.+.|..++|...++.... ++.
T Consensus 106 l~~~l~~~--P~~~~~~~la~~l~~~g~~~~Al~~l~~al~~~-P~~~~~~~~la~~l~~~~~~e~Al~~l~~~~~-~p~ 181 (765)
T PRK10049 106 AKQLVSGA--PDKANLLALAYVYKRAGRHWDELRAMTQALPRA-PQTQQYPTEYVQALRNNRLSAPALGAIDDANL-TPA 181 (765)
T ss_pred HHHHHHhC--CCCHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHCCChHHHHHHHHhCCC-CHH
Confidence 55555442 221114444445555555555555555555543 23444445566667777777777777776665 211
Q ss_pred --------HHHHHHHHH-----HhcCCH---HHHHHHHHHHhhc-CCccCHh-HHHH----HHHHHhcccchhHHHHHHH
Q 003584 404 --------SWTSLITGC-----AYHGSY---EEALKYFSDMRIS-GICPDHV-VVSS----ILSACAELTVLEFGQQVHA 461 (809)
Q Consensus 404 --------~~~~li~~~-----~~~g~~---~~A~~~~~~m~~~-g~~p~~~-t~~~----ll~a~~~~~~~~~a~~~~~ 461 (809)
....++..+ ...+++ ++|++.++.+.+. ...|+.. .+.. .+.++...++.++|...++
T Consensus 182 ~~~~l~~~~~~~~~r~~~~~~~~~~~r~~~ad~Al~~~~~ll~~~~~~p~~~~~~~~a~~d~l~~Ll~~g~~~eA~~~~~ 261 (765)
T PRK10049 182 EKRDLEADAAAELVRLSFMPTRSEKERYAIADRALAQYDALEALWHDNPDATADYQRARIDRLGALLARDRYKDVISEYQ 261 (765)
T ss_pred HHHHHHHHHHHHHHHhhcccccChhHHHHHHHHHHHHHHHHHhhcccCCccchHHHHHHHHHHHHHHHhhhHHHHHHHHH
Confidence 111111111 112223 5666666666643 1222221 1110 0122233344444554444
Q ss_pred HHHHhCCCCChhHHhHHHHHHHhcCCHHHHHHHHHhcCCCCe-------eechHHHHHHHhcCChHHHHHHHHHHHHCCC
Q 003584 462 VFLKSGGCSSLSVDNSLVLVYAKCGCINDANRVFDSMHTRDV-------ITWTALIMGCAQNGKGKEALQFYDQMLARGT 534 (809)
Q Consensus 462 ~~~~~g~~~~~~~~~~li~~y~k~g~~~~A~~~~~~~~~~~~-------~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~ 534 (809)
.+.+.+.+........+...|...|++++|...|+++.+.+. ..+..+..++...|++++|+.+++++...
T Consensus 262 ~ll~~~~~~P~~a~~~la~~yl~~g~~e~A~~~l~~~l~~~p~~~~~~~~~~~~L~~a~~~~g~~~eA~~~l~~~~~~-- 339 (765)
T PRK10049 262 RLKAEGQIIPPWAQRWVASAYLKLHQPEKAQSILTELFYHPETIADLSDEELADLFYSLLESENYPGALTVTAHTINN-- 339 (765)
T ss_pred HhhccCCCCCHHHHHHHHHHHHhcCCcHHHHHHHHHHhhcCCCCCCCChHHHHHHHHHHHhcccHHHHHHHHHHHhhc--
Confidence 444433110111111123344444555555544444431110 11222333444444555555444444432
Q ss_pred CCCHH-HHHHHHHHHHccCCHHHHHHHHHHhHHhhCCCCC---hHHHHHHHHHHhhcCCHHHHHHHHHhCcC--CCCHHH
Q 003584 535 KPDYI-TFVGLLFACSHAGLAENARWYFESMDKVYGIKPG---PDHYACMIDLLGRSGKLIEAKALLDQMVG--EPDATV 608 (809)
Q Consensus 535 ~pd~~-t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~---~~~~~~li~~~~~~g~~~eA~~~~~~m~~--~p~~~~ 608 (809)
.|... .+. ...-.|+ ...+..++.++...|++++|++.++++.. +.+...
T Consensus 340 ~P~~~~~~~------------------------~~~~~p~~~~~~a~~~~a~~l~~~g~~~eA~~~l~~al~~~P~n~~l 395 (765)
T PRK10049 340 SPPFLRLYG------------------------SPTSIPNDDWLQGQSLLSQVAKYSNDLPQAEMRARELAYNAPGNQGL 395 (765)
T ss_pred CCceEeecC------------------------CCCCCCCchHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHH
Confidence 11000 000 0001122 12334455555566666666666665543 223345
Q ss_pred HHHHHHHHHhcCChhHHHHHHHHHhccCCCCCccHHhHhhhhhhcCChhHHHHHHHHHHh
Q 003584 609 WKALLSACRVHGDLELGERAANNLFELEPMNAMPYVQLSNMYSTAGKWEDAARVRKLMKS 668 (809)
Q Consensus 609 ~~~ll~a~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~ 668 (809)
+..+...+...|+.++|++.++++++++|++...+..++..+...|+|++|..+++.+.+
T Consensus 396 ~~~lA~l~~~~g~~~~A~~~l~~al~l~Pd~~~l~~~~a~~al~~~~~~~A~~~~~~ll~ 455 (765)
T PRK10049 396 RIDYASVLQARGWPRAAENELKKAEVLEPRNINLEVEQAWTALDLQEWRQMDVLTDDVVA 455 (765)
T ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHhhCCCChHHHHHHHHHHHHhCCHHHHHHHHHHHHH
Confidence 666666666666666666666666666666666666666666666666666666665544
No 23
>PRK10049 pgaA outer membrane protein PgaA; Provisional
Probab=99.78 E-value=2e-15 Score=175.73 Aligned_cols=371 Identities=13% Similarity=0.058 Sum_probs=253.9
Q ss_pred CchhHHHHHHHHHHhCCChHHHHHHHhccCC---CCeeeHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCC-cccHHHHH
Q 003584 268 ANVYVQSALIDMYAKCGDLDSARRLLEYSEI---DNEVSWNSMIVGFARQGFHKEALSLFKKMHARDIKID-DFTYPSVL 343 (809)
Q Consensus 268 ~~~~~~~~Li~~y~~~g~~~~A~~~f~~~~~---~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~-~~t~~~ll 343 (809)
.+.....-.+......|+.++|.+++..... .+...+..+...+...|++++|..+|++..+. .|+ ......+.
T Consensus 13 ~~~~~~~d~~~ia~~~g~~~~A~~~~~~~~~~~~~~a~~~~~lA~~~~~~g~~~~A~~~~~~al~~--~P~~~~a~~~la 90 (765)
T PRK10049 13 LSNNQIADWLQIALWAGQDAEVITVYNRYRVHMQLPARGYAAVAVAYRNLKQWQNSLTLWQKALSL--EPQNDDYQRGLI 90 (765)
T ss_pred CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--CCCCHHHHHHHH
Confidence 3444555566777888999999999987653 23345888888999999999999999998775 343 34456667
Q ss_pred HHhhcCCChHHHHHHHHHHHHhccCCchHHHHHHHHHHHhcCCHHHHHHHHhhcCC---CCHhHHHHHHHHHHhcCCHHH
Q 003584 344 NCFASNIDLNNAKSVHSLIVKTGFEGYKFVNNALIDMYAKQGNLDCAFMVFNLMQD---KDVISWTSLITGCAYHGSYEE 420 (809)
Q Consensus 344 ~~~~~~~~~~~a~~i~~~~~~~g~~~~~~~~~~li~~y~~~g~~~~A~~~f~~~~~---~~~~~~~~li~~~~~~g~~~~ 420 (809)
..+...|+.++|...++.+++.. +.+.. +..+..++...|+.++|...++++.+ .+...+..+...+...|..++
T Consensus 91 ~~l~~~g~~~eA~~~l~~~l~~~-P~~~~-~~~la~~l~~~g~~~~Al~~l~~al~~~P~~~~~~~~la~~l~~~~~~e~ 168 (765)
T PRK10049 91 LTLADAGQYDEALVKAKQLVSGA-PDKAN-LLALAYVYKRAGRHWDELRAMTQALPRAPQTQQYPTEYVQALRNNRLSAP 168 (765)
T ss_pred HHHHHCCCHHHHHHHHHHHHHhC-CCCHH-HHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCChHH
Confidence 77888899999999999888773 44555 77888888889999999999988765 255566777778888888888
Q ss_pred HHHHHHHHhhcCCccCHhHHHHHHHHHhcccchhHHHHHHHHHHHhCCCCChhHHhHHHHHHHhcCCH---HHHHHHHHh
Q 003584 421 ALKYFSDMRISGICPDHVVVSSILSACAELTVLEFGQQVHAVFLKSGGCSSLSVDNSLVLVYAKCGCI---NDANRVFDS 497 (809)
Q Consensus 421 A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~y~k~g~~---~~A~~~~~~ 497 (809)
|++.++.... .|+.... +.. ..+ ....+. .+...+...+++ ++|.+.++.
T Consensus 169 Al~~l~~~~~---~p~~~~~---l~~-------~~~----~~~~r~----------~~~~~~~~~~r~~~ad~Al~~~~~ 221 (765)
T PRK10049 169 ALGAIDDANL---TPAEKRD---LEA-------DAA----AELVRL----------SFMPTRSEKERYAIADRALAQYDA 221 (765)
T ss_pred HHHHHHhCCC---CHHHHHH---HHH-------HHH----HHHHHh----------hcccccChhHHHHHHHHHHHHHHH
Confidence 8888876653 3431000 000 000 000000 000111122223 556655555
Q ss_pred cC---CCCeeechH-------HHHHHHhcCChHHHHHHHHHHHHCCCC-CCHHHHHHHHHHHHccCCHHHHHHHHHHhHH
Q 003584 498 MH---TRDVITWTA-------LIMGCAQNGKGKEALQFYDQMLARGTK-PDYITFVGLLFACSHAGLAENARWYFESMDK 566 (809)
Q Consensus 498 ~~---~~~~~~~~~-------li~~~~~~g~~~~A~~l~~~m~~~g~~-pd~~t~~~ll~a~~~~g~~~~a~~~~~~m~~ 566 (809)
+. ..++..... .+..+...|++++|+..|+++.+.+-+ |+.. ...+..++...|++++|...|+.+.+
T Consensus 222 ll~~~~~~p~~~~~~~~a~~d~l~~Ll~~g~~~eA~~~~~~ll~~~~~~P~~a-~~~la~~yl~~g~~e~A~~~l~~~l~ 300 (765)
T PRK10049 222 LEALWHDNPDATADYQRARIDRLGALLARDRYKDVISEYQRLKAEGQIIPPWA-QRWVASAYLKLHQPEKAQSILTELFY 300 (765)
T ss_pred HHhhcccCCccchHHHHHHHHHHHHHHHhhhHHHHHHHHHHhhccCCCCCHHH-HHHHHHHHHhcCCcHHHHHHHHHHhh
Confidence 54 112211111 133445668888888888888876522 3322 22246678888888888888887764
Q ss_pred hhCCCC--ChHHHHHHHHHHhhcCCHHHHHHHHHhCcCC-C-------------C---HHHHHHHHHHHHhcCChhHHHH
Q 003584 567 VYGIKP--GPDHYACMIDLLGRSGKLIEAKALLDQMVGE-P-------------D---ATVWKALLSACRVHGDLELGER 627 (809)
Q Consensus 567 ~~~~~p--~~~~~~~li~~~~~~g~~~eA~~~~~~m~~~-p-------------~---~~~~~~ll~a~~~~g~~~~A~~ 627 (809)
.....+ ....+..|..++...|++++|.+.++++... | + ...+..+...+...|+.++|+.
T Consensus 301 ~~p~~~~~~~~~~~~L~~a~~~~g~~~eA~~~l~~~~~~~P~~~~~~~~~~~~p~~~~~~a~~~~a~~l~~~g~~~eA~~ 380 (765)
T PRK10049 301 HPETIADLSDEELADLFYSLLESENYPGALTVTAHTINNSPPFLRLYGSPTSIPNDDWLQGQSLLSQVAKYSNDLPQAEM 380 (765)
T ss_pred cCCCCCCCChHHHHHHHHHHHhcccHHHHHHHHHHHhhcCCceEeecCCCCCCCCchHHHHHHHHHHHHHHcCCHHHHHH
Confidence 311111 1345666677778888888888888777642 2 2 1245667788999999999999
Q ss_pred HHHHHhccCCCCCccHHhHhhhhhhcCChhHHHHHHHHHHhCC
Q 003584 628 AANNLFELEPMNAMPYVQLSNMYSTAGKWEDAARVRKLMKSRG 670 (809)
Q Consensus 628 ~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~ 670 (809)
.++++++..|+++..+..++.++...|+.++|.+.+++..+..
T Consensus 381 ~l~~al~~~P~n~~l~~~lA~l~~~~g~~~~A~~~l~~al~l~ 423 (765)
T PRK10049 381 RARELAYNAPGNQGLRIDYASVLQARGWPRAAENELKKAEVLE 423 (765)
T ss_pred HHHHHHHhCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhC
Confidence 9999999999999999999999999999999999999988754
No 24
>TIGR00990 3a0801s09 mitochondrial precursor proteins import receptor (72 kDa mitochondrial outermembrane protein) (mitochondrial import receptor for the ADP/ATP carrier) (translocase of outermembrane tom70).
Probab=99.77 E-value=4.5e-15 Score=169.77 Aligned_cols=441 Identities=11% Similarity=-0.009 Sum_probs=253.4
Q ss_pred HHHHHHhhhcCCChhHHHHHhhhCCC-CCCcccHHHHHHHHhhCCChHHHHHHHHHHHHCCCCCC-cchHHHHHHHHhcc
Q 003584 171 VTGLVDMYAKCKCIFEAEYLFKMFPD-GKNHVAWTTMITGYSQNGYGFKAIECFRDMRVEGVESN-QFTFPSILTACAAV 248 (809)
Q Consensus 171 ~~~li~~y~~~g~~~~A~~~f~~~~~-~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~-~~t~~~ll~~~~~~ 248 (809)
+..+...|.+.|++++|...|++... .|+...|..+..+|.+.|++++|++.++...+. .|+ ...+..+-.++...
T Consensus 130 ~k~~G~~~~~~~~~~~Ai~~y~~al~~~p~~~~~~n~a~~~~~l~~~~~Ai~~~~~al~l--~p~~~~a~~~~a~a~~~l 207 (615)
T TIGR00990 130 LKEKGNKAYRNKDFNKAIKLYSKAIECKPDPVYYSNRAACHNALGDWEKVVEDTTAALEL--DPDYSKALNRRANAYDGL 207 (615)
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHhcCCchHHHHHHHHHHHHhCCHHHHHHHHHHHHHc--CCCCHHHHHHHHHHHHHc
Confidence 33455667778888888888876433 256667778888888888888888888887764 343 44667777778888
Q ss_pred CChHHHHHHHHHHHHhCCCCchhHHHHHHHHHHhCCChHHHHHHHhccCCCCeeeHHHHHHHHHhcCChhHHHHHHHHHH
Q 003584 249 SARDFGAQVHGCILSSGFEANVYVQSALIDMYAKCGDLDSARRLLEYSEIDNEVSWNSMIVGFARQGFHKEALSLFKKMH 328 (809)
Q Consensus 249 ~~~~~a~~~~~~~~~~g~~~~~~~~~~Li~~y~~~g~~~~A~~~f~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~ 328 (809)
|++++|..-+..+...+-..+... ..++.-+.+......+...++.-+ .+..++..+.. |...........-+.+-.
T Consensus 208 g~~~eA~~~~~~~~~~~~~~~~~~-~~~~~~~l~~~a~~~~~~~l~~~~-~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~ 284 (615)
T TIGR00990 208 GKYADALLDLTASCIIDGFRNEQS-AQAVERLLKKFAESKAKEILETKP-ENLPSVTFVGN-YLQSFRPKPRPAGLEDSN 284 (615)
T ss_pred CCHHHHHHHHHHHHHhCCCccHHH-HHHHHHHHHHHHHHHHHHHHhcCC-CCCCCHHHHHH-HHHHccCCcchhhhhccc
Confidence 888888877766555432222221 112221111111233444443322 23334443333 322222222221111111
Q ss_pred HCCCCCCc-ccHHHHHHH---hhcCCChHHHHHHHHHHHHhc-c-CCchHHHHHHHHHHHhcCCHHHHHHHHhhcCC--C
Q 003584 329 ARDIKIDD-FTYPSVLNC---FASNIDLNNAKSVHSLIVKTG-F-EGYKFVNNALIDMYAKQGNLDCAFMVFNLMQD--K 400 (809)
Q Consensus 329 ~~g~~p~~-~t~~~ll~~---~~~~~~~~~a~~i~~~~~~~g-~-~~~~~~~~~li~~y~~~g~~~~A~~~f~~~~~--~ 400 (809)
+ ..|+. ..+..+... ....+.+++|.+.++.+++.+ . +.....++.+...|...|++++|...|+...+ |
T Consensus 285 ~--~~~~~~~~~~~l~~~~~e~~~~~~y~~A~~~~~~al~~~~~~~~~a~a~~~lg~~~~~~g~~~eA~~~~~kal~l~P 362 (615)
T TIGR00990 285 E--LDEETGNGQLQLGLKSPESKADESYEEAARAFEKALDLGKLGEKEAIALNLRGTFKCLKGKHLEALADLSKSIELDP 362 (615)
T ss_pred c--cccccccchHHHHHHHHHhhhhhhHHHHHHHHHHHHhcCCCChhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCC
Confidence 1 11110 001000000 012234455555555554433 1 12223344444444445555555555544432 1
Q ss_pred -CHhHHHHHHHHHHhcCCHHHHHHHHHHHhhcCCccCHhHHHHHHHHHhcccchhHHHHHHHHHHHhCCCCChhHHhHHH
Q 003584 401 -DVISWTSLITGCAYHGSYEEALKYFSDMRISGICPDHVVVSSILSACAELTVLEFGQQVHAVFLKSGGCSSLSVDNSLV 479 (809)
Q Consensus 401 -~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li 479 (809)
+..+|..+...+...|++++|+..|++ +++.. +.+..++..+.
T Consensus 363 ~~~~~~~~la~~~~~~g~~~eA~~~~~~-----------------------------------al~~~-p~~~~~~~~lg 406 (615)
T TIGR00990 363 RVTQSYIKRASMNLELGDPDKAEEDFDK-----------------------------------ALKLN-SEDPDIYYHRA 406 (615)
T ss_pred CcHHHHHHHHHHHHHCCCHHHHHHHHHH-----------------------------------HHHhC-CCCHHHHHHHH
Confidence 223444444444444555555544444 44432 33455666677
Q ss_pred HHHHhcCCHHHHHHHHHhcCC--C-CeeechHHHHHHHhcCChHHHHHHHHHHHHCCCCCC-HHHHHHHHHHHHccCCHH
Q 003584 480 LVYAKCGCINDANRVFDSMHT--R-DVITWTALIMGCAQNGKGKEALQFYDQMLARGTKPD-YITFVGLLFACSHAGLAE 555 (809)
Q Consensus 480 ~~y~k~g~~~~A~~~~~~~~~--~-~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~pd-~~t~~~ll~a~~~~g~~~ 555 (809)
..|...|++++|...|++..+ | +...|..+...+.+.|++++|+..|++.+.. .|+ ...+..+..++...|+++
T Consensus 407 ~~~~~~g~~~~A~~~~~kal~l~P~~~~~~~~la~~~~~~g~~~eA~~~~~~al~~--~P~~~~~~~~lg~~~~~~g~~~ 484 (615)
T TIGR00990 407 QLHFIKGEFAQAGKDYQKSIDLDPDFIFSHIQLGVTQYKEGSIASSMATFRRCKKN--FPEAPDVYNYYGELLLDQNKFD 484 (615)
T ss_pred HHHHHcCCHHHHHHHHHHHHHcCccCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHh--CCCChHHHHHHHHHHHHccCHH
Confidence 778888888888888887752 3 4556777788888889999999999988874 454 567788888888899999
Q ss_pred HHHHHHHHhHHhhCCCCCh--------HHHHHHHHHHhhcCCHHHHHHHHHhCcC-CCC-HHHHHHHHHHHHhcCChhHH
Q 003584 556 NARWYFESMDKVYGIKPGP--------DHYACMIDLLGRSGKLIEAKALLDQMVG-EPD-ATVWKALLSACRVHGDLELG 625 (809)
Q Consensus 556 ~a~~~~~~m~~~~~~~p~~--------~~~~~li~~~~~~g~~~eA~~~~~~m~~-~p~-~~~~~~ll~a~~~~g~~~~A 625 (809)
+|...|+...+ +.|+. ..++.....+...|++++|.+++++... .|+ ...+..+...+...|++++|
T Consensus 485 ~A~~~~~~Al~---l~p~~~~~~~~~~~l~~~a~~~~~~~~~~~eA~~~~~kAl~l~p~~~~a~~~la~~~~~~g~~~eA 561 (615)
T TIGR00990 485 EAIEKFDTAIE---LEKETKPMYMNVLPLINKALALFQWKQDFIEAENLCEKALIIDPECDIAVATMAQLLLQQGDVDEA 561 (615)
T ss_pred HHHHHHHHHHh---cCCccccccccHHHHHHHHHHHHHHhhhHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHccCHHHH
Confidence 99999888764 33321 1122222334456999999999988653 454 44788999999999999999
Q ss_pred HHHHHHHhccCCCCCccHHhHhhhhhhcCChhHHHHHHHHHH
Q 003584 626 ERAANNLFELEPMNAMPYVQLSNMYSTAGKWEDAARVRKLMK 667 (809)
Q Consensus 626 ~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~ 667 (809)
+..+++++++.+.....+ ....+.+|.++....+
T Consensus 562 i~~~e~A~~l~~~~~e~~--------~a~~~~~a~~~~~~~~ 595 (615)
T TIGR00990 562 LKLFERAAELARTEGELV--------QAISYAEATRTQIQVQ 595 (615)
T ss_pred HHHHHHHHHHhccHHHHH--------HHHHHHHHHHHHHHHH
Confidence 999999999877543321 2234445555544444
No 25
>PRK15174 Vi polysaccharide export protein VexE; Provisional
Probab=99.75 E-value=3.2e-15 Score=170.21 Aligned_cols=326 Identities=13% Similarity=0.003 Sum_probs=265.9
Q ss_pred cccHHHHHHHhhcCCChHHHHHHHHHHHHhccCCchHHHHHHHHHHHhcCCHHHHHHHHhhcCC---CCHhHHHHHHHHH
Q 003584 336 DFTYPSVLNCFASNIDLNNAKSVHSLIVKTGFEGYKFVNNALIDMYAKQGNLDCAFMVFNLMQD---KDVISWTSLITGC 412 (809)
Q Consensus 336 ~~t~~~ll~~~~~~~~~~~a~~i~~~~~~~g~~~~~~~~~~li~~y~~~g~~~~A~~~f~~~~~---~~~~~~~~li~~~ 412 (809)
..-...++..+.+.|+++.|..++..++.....+ ......++......|++++|...|+.+.. .+...|..+...+
T Consensus 42 ~~~~~~~~~~~~~~g~~~~A~~l~~~~l~~~p~~-~~~l~~l~~~~l~~g~~~~A~~~l~~~l~~~P~~~~a~~~la~~l 120 (656)
T PRK15174 42 EQNIILFAIACLRKDETDVGLTLLSDRVLTAKNG-RDLLRRWVISPLASSQPDAVLQVVNKLLAVNVCQPEDVLLVASVL 120 (656)
T ss_pred ccCHHHHHHHHHhcCCcchhHHHhHHHHHhCCCc-hhHHHHHhhhHhhcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHH
Confidence 3445667788899999999999999998876444 34445555667789999999999999875 3567888899999
Q ss_pred HhcCCHHHHHHHHHHHhhcCCccC-HhHHHHHHHHHhcccchhHHHHHHHHHHHhCCCCChhHHhHHHHHHHhcCCHHHH
Q 003584 413 AYHGSYEEALKYFSDMRISGICPD-HVVVSSILSACAELTVLEFGQQVHAVFLKSGGCSSLSVDNSLVLVYAKCGCINDA 491 (809)
Q Consensus 413 ~~~g~~~~A~~~~~~m~~~g~~p~-~~t~~~ll~a~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~y~k~g~~~~A 491 (809)
.+.|++++|+..|+++.+. .|+ ...+..+...+...|+.++|...+..+......+ ...+..+ ..+...|++++|
T Consensus 121 ~~~g~~~~Ai~~l~~Al~l--~P~~~~a~~~la~~l~~~g~~~eA~~~~~~~~~~~P~~-~~a~~~~-~~l~~~g~~~eA 196 (656)
T PRK15174 121 LKSKQYATVADLAEQAWLA--FSGNSQIFALHLRTLVLMDKELQAISLARTQAQEVPPR-GDMIATC-LSFLNKSRLPED 196 (656)
T ss_pred HHcCCHHHHHHHHHHHHHh--CCCcHHHHHHHHHHHHHCCChHHHHHHHHHHHHhCCCC-HHHHHHH-HHHHHcCCHHHH
Confidence 9999999999999999875 454 5566777888999999999999999887765333 3333333 347889999999
Q ss_pred HHHHHhcCCCC----eeechHHHHHHHhcCChHHHHHHHHHHHHCCCCCC-HHHHHHHHHHHHccCCHHH----HHHHHH
Q 003584 492 NRVFDSMHTRD----VITWTALIMGCAQNGKGKEALQFYDQMLARGTKPD-YITFVGLLFACSHAGLAEN----ARWYFE 562 (809)
Q Consensus 492 ~~~~~~~~~~~----~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~pd-~~t~~~ll~a~~~~g~~~~----a~~~~~ 562 (809)
...++.+.+.+ ...+..+...+...|++++|+..|+++... .|+ ...+..+..++...|++++ |...|+
T Consensus 197 ~~~~~~~l~~~~~~~~~~~~~l~~~l~~~g~~~eA~~~~~~al~~--~p~~~~~~~~Lg~~l~~~G~~~eA~~~A~~~~~ 274 (656)
T PRK15174 197 HDLARALLPFFALERQESAGLAVDTLCAVGKYQEAIQTGESALAR--GLDGAALRRSLGLAYYQSGRSREAKLQAAEHWR 274 (656)
T ss_pred HHHHHHHHhcCCCcchhHHHHHHHHHHHCCCHHHHHHHHHHHHhc--CCCCHHHHHHHHHHHHHcCCchhhHHHHHHHHH
Confidence 99999876432 233445567888999999999999999985 454 4577788899999999986 789998
Q ss_pred HhHHhhCCCC-ChHHHHHHHHHHhhcCCHHHHHHHHHhCcC-CCC-HHHHHHHHHHHHhcCChhHHHHHHHHHhccCCCC
Q 003584 563 SMDKVYGIKP-GPDHYACMIDLLGRSGKLIEAKALLDQMVG-EPD-ATVWKALLSACRVHGDLELGERAANNLFELEPMN 639 (809)
Q Consensus 563 ~m~~~~~~~p-~~~~~~~li~~~~~~g~~~eA~~~~~~m~~-~p~-~~~~~~ll~a~~~~g~~~~A~~~~~~~~~~~p~~ 639 (809)
...+ +.| +...+..+..++.+.|++++|...+++... .|+ ..++..+..++...|++++|+..++++++.+|++
T Consensus 275 ~Al~---l~P~~~~a~~~lg~~l~~~g~~~eA~~~l~~al~l~P~~~~a~~~La~~l~~~G~~~eA~~~l~~al~~~P~~ 351 (656)
T PRK15174 275 HALQ---FNSDNVRIVTLYADALIRTGQNEKAIPLLQQSLATHPDLPYVRAMYARALRQVGQYTAASDEFVQLAREKGVT 351 (656)
T ss_pred HHHh---hCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCccc
Confidence 8874 445 457888999999999999999999998775 354 5588889999999999999999999999999998
Q ss_pred CccHHhHhhhhhhcCChhHHHHHHHHHHhCCC
Q 003584 640 AMPYVQLSNMYSTAGKWEDAARVRKLMKSRGI 671 (809)
Q Consensus 640 ~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~ 671 (809)
+..+..++.++...|++++|...+++..+...
T Consensus 352 ~~~~~~~a~al~~~G~~deA~~~l~~al~~~P 383 (656)
T PRK15174 352 SKWNRYAAAALLQAGKTSEAESVFEHYIQARA 383 (656)
T ss_pred hHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCh
Confidence 87777788999999999999999999876643
No 26
>PRK14574 hmsH outer membrane protein; Provisional
Probab=99.73 E-value=6.3e-14 Score=159.76 Aligned_cols=423 Identities=12% Similarity=0.025 Sum_probs=233.4
Q ss_pred HHhhCCChHHHHHHHHHHHHCCCCCCcc-hHHHHHHHHhccCChHHHHHHHHHHHHhCCCCchhHHHHHHHHHHhCCChH
Q 003584 209 GYSQNGYGFKAIECFRDMRVEGVESNQF-TFPSILTACAAVSARDFGAQVHGCILSSGFEANVYVQSALIDMYAKCGDLD 287 (809)
Q Consensus 209 ~~~~~g~~~~A~~l~~~m~~~g~~p~~~-t~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~Li~~y~~~g~~~ 287 (809)
...+.|++..|++.|++..+. .|+.. ....++..+...|+.++|...++..+.. -........++...|...|+++
T Consensus 43 i~~r~Gd~~~Al~~L~qaL~~--~P~~~~av~dll~l~~~~G~~~~A~~~~eka~~p-~n~~~~~llalA~ly~~~gdyd 119 (822)
T PRK14574 43 IRARAGDTAPVLDYLQEESKA--GPLQSGQVDDWLQIAGWAGRDQEVIDVYERYQSS-MNISSRGLASAARAYRNEKRWD 119 (822)
T ss_pred HHHhCCCHHHHHHHHHHHHhh--CccchhhHHHHHHHHHHcCCcHHHHHHHHHhccC-CCCCHHHHHHHHHHHHHcCCHH
Confidence 457899999999999999865 45542 2227777777889999999888888711 1222333334466888889999
Q ss_pred HHHHHHhccCCC---CeeeHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCcccHHHHHHHhhcCCChHHHHHHHHHHHH
Q 003584 288 SARRLLEYSEID---NEVSWNSMIVGFARQGFHKEALSLFKKMHARDIKIDDFTYPSVLNCFASNIDLNNAKSVHSLIVK 364 (809)
Q Consensus 288 ~A~~~f~~~~~~---~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~i~~~~~~ 364 (809)
+|..+|+++... |...+..++..|.+.++.++|++.++++... .|+...+..++..+...++..+|.+.++.+++
T Consensus 120 ~Aiely~kaL~~dP~n~~~l~gLa~~y~~~~q~~eAl~~l~~l~~~--dp~~~~~l~layL~~~~~~~~~AL~~~ekll~ 197 (822)
T PRK14574 120 QALALWQSSLKKDPTNPDLISGMIMTQADAGRGGVVLKQATELAER--DPTVQNYMTLSYLNRATDRNYDALQASSEAVR 197 (822)
T ss_pred HHHHHHHHHHhhCCCCHHHHHHHHHHHhhcCCHHHHHHHHHHhccc--CcchHHHHHHHHHHHhcchHHHHHHHHHHHHH
Confidence 999999887643 3455667778888889999999999888765 45555554444444445556558888888888
Q ss_pred hccCCchHHHHHHHHHHHhcCCHHHHHHHHhhcCCC-CHhHHHHH----HHHHHh---------cCC---HHHHHHHHHH
Q 003584 365 TGFEGYKFVNNALIDMYAKQGNLDCAFMVFNLMQDK-DVISWTSL----ITGCAY---------HGS---YEEALKYFSD 427 (809)
Q Consensus 365 ~g~~~~~~~~~~li~~y~~~g~~~~A~~~f~~~~~~-~~~~~~~l----i~~~~~---------~g~---~~~A~~~~~~ 427 (809)
.. +.+...+..++....+.|-...|.++..+-++- +...+.-+ +.-.++ ..+ .+.|+.-++.
T Consensus 198 ~~-P~n~e~~~~~~~~l~~~~~~~~a~~l~~~~p~~f~~~~~~~l~~~~~a~~vr~a~~~~~~~~~r~~~~d~ala~~~~ 276 (822)
T PRK14574 198 LA-PTSEEVLKNHLEILQRNRIVEPALRLAKENPNLVSAEHYRQLERDAAAEQVRMAVLPTRSETERFDIADKALADYQN 276 (822)
T ss_pred hC-CCCHHHHHHHHHHHHHcCCcHHHHHHHHhCccccCHHHHHHHHHHHHHHHHhhcccccccchhhHHHHHHHHHHHHH
Confidence 75 556777788888888888888888887776541 11111110 111111 111 1223333333
Q ss_pred Hhhc-CCccCH-hHH----HHHHHHHhcccchhHHHHHHHHHHHhCCCCChhHHhHHHHHHHhcCCHHHHHHHHHhcCCC
Q 003584 428 MRIS-GICPDH-VVV----SSILSACAELTVLEFGQQVHAVFLKSGGCSSLSVDNSLVLVYAKCGCINDANRVFDSMHTR 501 (809)
Q Consensus 428 m~~~-g~~p~~-~t~----~~ll~a~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~y~k~g~~~~A~~~~~~~~~~ 501 (809)
+... +-.|.. .-| .--+-++...++..++.+.++.+...+.+....+--++
T Consensus 277 l~~~~~~~p~~~~~~~~~~~Drl~aL~~r~r~~~vi~~y~~l~~~~~~~P~y~~~a~----------------------- 333 (822)
T PRK14574 277 LLTRWGKDPEAQADYQRARIDRLGALLVRHQTADLIKEYEAMEAEGYKMPDYARRWA----------------------- 333 (822)
T ss_pred HHhhccCCCccchHHHHHHHHHHHHHHHhhhHHHHHHHHHHhhhcCCCCCHHHHHHH-----------------------
Confidence 3221 111211 111 11122333444444444444444444433333344444
Q ss_pred CeeechHHHHHHHhcCChHHHHHHHHHHHHCC-----CCCCHHHHHHHHHHHHccCCHHHHHHHHHHhHHhhC-------
Q 003584 502 DVITWTALIMGCAQNGKGKEALQFYDQMLARG-----TKPDYITFVGLLFACSHAGLAENARWYFESMDKVYG------- 569 (809)
Q Consensus 502 ~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g-----~~pd~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~------- 569 (809)
.++|...+++++|+.+|+++.... ..++......|..++...+++++|..+++.+.+...
T Consensus 334 --------adayl~~~~P~kA~~l~~~~~~~~~~~~~~~~~~~~~~~L~yA~ld~e~~~~A~~~l~~~~~~~p~~~~~~~ 405 (822)
T PRK14574 334 --------ASAYIDRRLPEKAAPILSSLYYSDGKTFRNSDDLLDADDLYYSLNESEQLDKAYQFAVNYSEQTPYQVGVYG 405 (822)
T ss_pred --------HHHHHhcCCcHHHHHHHHHHhhccccccCCCcchHHHHHHHHHHHhcccHHHHHHHHHHHHhcCCcEEeccC
Confidence 444555555555555555544321 011122234455555555555555555555543100
Q ss_pred ---CCCCh---HHHHHHHHHHhhcCCHHHHHHHHHhCcC--CCCHHHHHHHHHHHHhcCChhHHHHHHHHHhccCCCCCc
Q 003584 570 ---IKPGP---DHYACMIDLLGRSGKLIEAKALLDQMVG--EPDATVWKALLSACRVHGDLELGERAANNLFELEPMNAM 641 (809)
Q Consensus 570 ---~~p~~---~~~~~li~~~~~~g~~~eA~~~~~~m~~--~p~~~~~~~ll~a~~~~g~~~~A~~~~~~~~~~~p~~~~ 641 (809)
-.|+. ..+..++..+...|++.+|++.++++.. +.|...+..+...+...|+...|++.++.+..++|++..
T Consensus 406 ~~~~~pn~d~~~~~~l~a~~~~~~gdl~~Ae~~le~l~~~aP~n~~l~~~~A~v~~~Rg~p~~A~~~~k~a~~l~P~~~~ 485 (822)
T PRK14574 406 LPGKEPNDDWIEGQTLLVQSLVALNDLPTAQKKLEDLSSTAPANQNLRIALASIYLARDLPRKAEQELKAVESLAPRSLI 485 (822)
T ss_pred CCCCCCCccHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhhhCCccHH
Confidence 01111 2233344555555556666555555543 234445555555555566666666555555555555555
Q ss_pred cHHhHhhhhhhcCChhHHHHHHHHHHh
Q 003584 642 PYVQLSNMYSTAGKWEDAARVRKLMKS 668 (809)
Q Consensus 642 ~~~~l~~~~~~~g~~~~A~~~~~~m~~ 668 (809)
+...++..+...|+|.+|..+.+...+
T Consensus 486 ~~~~~~~~al~l~e~~~A~~~~~~l~~ 512 (822)
T PRK14574 486 LERAQAETAMALQEWHQMELLTDDVIS 512 (822)
T ss_pred HHHHHHHHHHhhhhHHHHHHHHHHHHh
Confidence 555555555555666655555554443
No 27
>PRK14574 hmsH outer membrane protein; Provisional
Probab=99.73 E-value=1.1e-13 Score=157.74 Aligned_cols=439 Identities=10% Similarity=0.027 Sum_probs=304.3
Q ss_pred HhhhcCCChhHHHHHhhhCCCC-CCc-ccHHHHHHHHhhCCChHHHHHHHHHHHHCCCCCCcchHHHH---HHHHhccCC
Q 003584 176 DMYAKCKCIFEAEYLFKMFPDG-KNH-VAWTTMITGYSQNGYGFKAIECFRDMRVEGVESNQFTFPSI---LTACAAVSA 250 (809)
Q Consensus 176 ~~y~~~g~~~~A~~~f~~~~~~-~~~-~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~l---l~~~~~~~~ 250 (809)
-...+.|+++.|...|++.... |+. .....++..+...|+.++|+..+++.. .|+...+..+ ...+...|+
T Consensus 42 ii~~r~Gd~~~Al~~L~qaL~~~P~~~~av~dll~l~~~~G~~~~A~~~~eka~----~p~n~~~~~llalA~ly~~~gd 117 (822)
T PRK14574 42 IIRARAGDTAPVLDYLQEESKAGPLQSGQVDDWLQIAGWAGRDQEVIDVYERYQ----SSMNISSRGLASAARAYRNEKR 117 (822)
T ss_pred HHHHhCCCHHHHHHHHHHHHhhCccchhhHHHHHHHHHHcCCcHHHHHHHHHhc----cCCCCCHHHHHHHHHHHHHcCC
Confidence 3467899999999999987751 332 123488888999999999999999987 4444433333 446778899
Q ss_pred hHHHHHHHHHHHHhCCCCchhHHHHHHHHHHhCCChHHHHHHHhccCCCCeeeHHHHHHHHHh--cCChhHHHHHHHHHH
Q 003584 251 RDFGAQVHGCILSSGFEANVYVQSALIDMYAKCGDLDSARRLLEYSEIDNEVSWNSMIVGFAR--QGFHKEALSLFKKMH 328 (809)
Q Consensus 251 ~~~a~~~~~~~~~~g~~~~~~~~~~Li~~y~~~g~~~~A~~~f~~~~~~~~~~~~~li~~~~~--~g~~~~A~~~~~~m~ 328 (809)
++.|.++++.+++.. +.+..++..|+..|...++.++|...++++...+......+..+|.. .++..+|++.++++.
T Consensus 118 yd~Aiely~kaL~~d-P~n~~~l~gLa~~y~~~~q~~eAl~~l~~l~~~dp~~~~~l~layL~~~~~~~~~AL~~~ekll 196 (822)
T PRK14574 118 WDQALALWQSSLKKD-PTNPDLISGMIMTQADAGRGGVVLKQATELAERDPTVQNYMTLSYLNRATDRNYDALQASSEAV 196 (822)
T ss_pred HHHHHHHHHHHHhhC-CCCHHHHHHHHHHHhhcCCHHHHHHHHHHhcccCcchHHHHHHHHHHHhcchHHHHHHHHHHHH
Confidence 999999999999987 44577788889999999999999999999886555443334445544 566666999999999
Q ss_pred HCCCCC-CcccHHHHHHHhhcCCChHHHHHHHHHHHHhccCCchHH------HHHHHHH---HH--hcCC---HHHHHHH
Q 003584 329 ARDIKI-DDFTYPSVLNCFASNIDLNNAKSVHSLIVKTGFEGYKFV------NNALIDM---YA--KQGN---LDCAFMV 393 (809)
Q Consensus 329 ~~g~~p-~~~t~~~ll~~~~~~~~~~~a~~i~~~~~~~g~~~~~~~------~~~li~~---y~--~~g~---~~~A~~~ 393 (809)
+.. | +...+.....++.+.|-...|.++...-... +.+.... ...++.. .. ...+ .+.|+.-
T Consensus 197 ~~~--P~n~e~~~~~~~~l~~~~~~~~a~~l~~~~p~~-f~~~~~~~l~~~~~a~~vr~a~~~~~~~~~r~~~~d~ala~ 273 (822)
T PRK14574 197 RLA--PTSEEVLKNHLEILQRNRIVEPALRLAKENPNL-VSAEHYRQLERDAAAEQVRMAVLPTRSETERFDIADKALAD 273 (822)
T ss_pred HhC--CCCHHHHHHHHHHHHHcCCcHHHHHHHHhCccc-cCHHHHHHHHHHHHHHHHhhcccccccchhhHHHHHHHHHH
Confidence 874 4 4555677888899999988888776652211 1111110 0111110 00 1112 3445555
Q ss_pred HhhcCC-----CCH-h----HHHHHHHHHHhcCCHHHHHHHHHHHhhcCCccCHhHHHHHHHHHhcccchhHHHHHHHHH
Q 003584 394 FNLMQD-----KDV-I----SWTSLITGCAYHGSYEEALKYFSDMRISGICPDHVVVSSILSACAELTVLEFGQQVHAVF 463 (809)
Q Consensus 394 f~~~~~-----~~~-~----~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~~~~~~a~~~~~~~ 463 (809)
++.+.. |.. . ..--.+.++...|++.++++.|+.|...|.+....+-..+..+|...+.+++|..++..+
T Consensus 274 ~~~l~~~~~~~p~~~~~~~~~~~Drl~aL~~r~r~~~vi~~y~~l~~~~~~~P~y~~~a~adayl~~~~P~kA~~l~~~~ 353 (822)
T PRK14574 274 YQNLLTRWGKDPEAQADYQRARIDRLGALLVRHQTADLIKEYEAMEAEGYKMPDYARRWAASAYIDRRLPEKAAPILSSL 353 (822)
T ss_pred HHHHHhhccCCCccchHHHHHHHHHHHHHHHhhhHHHHHHHHHHhhhcCCCCCHHHHHHHHHHHHhcCCcHHHHHHHHHH
Confidence 555433 211 1 223456688899999999999999999987756668888999999999999999999988
Q ss_pred HHhCC-----CCChhHHhHHHHHHHhcCCHHHHHHHHHhcCCCCeeechHHHHHHHhcCChHHHHHHHHHHHHCCCCCCH
Q 003584 464 LKSGG-----CSSLSVDNSLVLVYAKCGCINDANRVFDSMHTRDVITWTALIMGCAQNGKGKEALQFYDQMLARGTKPDY 538 (809)
Q Consensus 464 ~~~g~-----~~~~~~~~~li~~y~k~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~pd~ 538 (809)
..... +++......|.-+|...+++++|..+++++.+..+.-++. + |... ....||-
T Consensus 354 ~~~~~~~~~~~~~~~~~~~L~yA~ld~e~~~~A~~~l~~~~~~~p~~~~~----~---~~~~-----------~~pn~d~ 415 (822)
T PRK14574 354 YYSDGKTFRNSDDLLDADDLYYSLNESEQLDKAYQFAVNYSEQTPYQVGV----Y---GLPG-----------KEPNDDW 415 (822)
T ss_pred hhccccccCCCcchHHHHHHHHHHHhcccHHHHHHHHHHHHhcCCcEEec----c---CCCC-----------CCCCccH
Confidence 76432 2233334566666777777777777777665321100000 0 0000 0123344
Q ss_pred HH-HHHHHHHHHccCCHHHHHHHHHHhHHhhCCCCChHHHHHHHHHHhhcCCHHHHHHHHHhCcC-CCC-HHHHHHHHHH
Q 003584 539 IT-FVGLLFACSHAGLAENARWYFESMDKVYGIKPGPDHYACMIDLLGRSGKLIEAKALLDQMVG-EPD-ATVWKALLSA 615 (809)
Q Consensus 539 ~t-~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~~~~~~~li~~~~~~g~~~eA~~~~~~m~~-~p~-~~~~~~ll~a 615 (809)
.. +..++..+.-.|++.+|.+.++.+.. .-+-|......+.+++...|++.+|.+.++.... .|+ ..+...++.+
T Consensus 416 ~~~~~l~a~~~~~~gdl~~Ae~~le~l~~--~aP~n~~l~~~~A~v~~~Rg~p~~A~~~~k~a~~l~P~~~~~~~~~~~~ 493 (822)
T PRK14574 416 IEGQTLLVQSLVALNDLPTAQKKLEDLSS--TAPANQNLRIALASIYLARDLPRKAEQELKAVESLAPRSLILERAQAET 493 (822)
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHH--hCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhhhCCccHHHHHHHHHH
Confidence 33 33455667888999999999988864 3344677888899999999999999999977654 354 4477788888
Q ss_pred HHhcCChhHHHHHHHHHhccCCCCCcc
Q 003584 616 CRVHGDLELGERAANNLFELEPMNAMP 642 (809)
Q Consensus 616 ~~~~g~~~~A~~~~~~~~~~~p~~~~~ 642 (809)
+...|++++|..+.+++++..|+++.+
T Consensus 494 al~l~e~~~A~~~~~~l~~~~Pe~~~~ 520 (822)
T PRK14574 494 AMALQEWHQMELLTDDVISRSPEDIPS 520 (822)
T ss_pred HHhhhhHHHHHHHHHHHHhhCCCchhH
Confidence 888899999999999999999988754
No 28
>KOG4422 consensus Uncharacterized conserved protein [Function unknown]
Probab=99.72 E-value=3.2e-13 Score=133.35 Aligned_cols=444 Identities=16% Similarity=0.132 Sum_probs=273.9
Q ss_pred chHHHHHHHHHcCCCchhHHHHHHHHHHcCCCCCcccHHHHHHHhh--cCCCchHHH-HHHHHHHHhCCCCchHHHHHHH
Q 003584 99 FTWSSLIYGYSNYGLDIEAFELFWQMQLEGYRPSQYTLDNVLRLCS--LKGLLQRGE-QFHGYAIKTCFDLNAFVVTGLV 175 (809)
Q Consensus 99 ~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~--~~~~~~~a~-~~~~~~~~~g~~~~~~~~~~li 175 (809)
.+=|.|+.. ...|...++.-+|++|...|+..+...-..|++..+ ....+.-++ +-+-.+.+.|-. +..+|
T Consensus 117 ~~E~nL~km-IS~~EvKDs~ilY~~m~~e~~~vS~kvq~~L~~LV~~~Ns~~~~~~E~~~Fv~~~~~~E~-S~~sW---- 190 (625)
T KOG4422|consen 117 ETENNLLKM-ISSREVKDSCILYERMRSENVDVSEKVQLELFRLVTYYNSSNVPFAEWEEFVGMRNFGED-STSSW---- 190 (625)
T ss_pred cchhHHHHH-HhhcccchhHHHHHHHHhcCCCCCHHHHHHHHHHHHhhcCCCCcchhHHHHhhccccccc-ccccc----
Confidence 455666554 456888999999999999998877776666665433 222222111 111122222211 11222
Q ss_pred HhhhcCCChhHHHHHhhhCCCCCCcccHHHHHHHHhhCCChHHHHHHHHHHHHCCCCCCcchHHHHHHHHhccCChHHHH
Q 003584 176 DMYAKCKCIFEAEYLFKMFPDGKNHVAWTTMITGYSQNGYGFKAIECFRDMRVEGVESNQFTFPSILTACAAVSARDFGA 255 (809)
Q Consensus 176 ~~y~~~g~~~~A~~~f~~~~~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~ 255 (809)
|.|.+.+ -+|+..|. +..++..||.|+++-...+.|.++|++-.....+.+..+|+.+|.+.+- ..++
T Consensus 191 ----K~G~vAd--L~~E~~PK--T~et~s~mI~Gl~K~~~~ERA~~L~kE~~~~k~kv~~~aFN~lI~~~S~----~~~K 258 (625)
T KOG4422|consen 191 ----KSGAVAD--LLFETLPK--TDETVSIMIAGLCKFSSLERARELYKEHRAAKGKVYREAFNGLIGASSY----SVGK 258 (625)
T ss_pred ----ccccHHH--HHHhhcCC--CchhHHHHHHHHHHHHhHHHHHHHHHHHHHhhheeeHHhhhhhhhHHHh----hccH
Confidence 3455444 66777665 6789999999999999999999999999988889999999999987653 3348
Q ss_pred HHHHHHHHhCCCCchhHHHHHHHHHHhCCChHHHHHHHhccCCCCeeeHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCC
Q 003584 256 QVHGCILSSGFEANVYVQSALIDMYAKCGDLDSARRLLEYSEIDNEVSWNSMIVGFARQGFHKEALSLFKKMHARDIKID 335 (809)
Q Consensus 256 ~~~~~~~~~g~~~~~~~~~~Li~~y~~~g~~~~A~~~f~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~ 335 (809)
++..+|+...+.||..|+|+++....+.|+++.|++.+ ++++.+|++.|+.|.
T Consensus 259 ~Lv~EMisqkm~Pnl~TfNalL~c~akfg~F~~ar~aa---------------------------lqil~EmKeiGVePs 311 (625)
T KOG4422|consen 259 KLVAEMISQKMTPNLFTFNALLSCAAKFGKFEDARKAA---------------------------LQILGEMKEIGVEPS 311 (625)
T ss_pred HHHHHHHHhhcCCchHhHHHHHHHHHHhcchHHHHHHH---------------------------HHHHHHHHHhCCCcc
Confidence 89999999999999999999999999999999887553 455566666666666
Q ss_pred cccHHHHHHHhhcCCChHH-HHHHHHHHHH----hcc----CCchHHHHHHHHHHHhcCCHHHHHHHHhhcCCC------
Q 003584 336 DFTYPSVLNCFASNIDLNN-AKSVHSLIVK----TGF----EGYKFVNNALIDMYAKQGNLDCAFMVFNLMQDK------ 400 (809)
Q Consensus 336 ~~t~~~ll~~~~~~~~~~~-a~~i~~~~~~----~g~----~~~~~~~~~li~~y~~~g~~~~A~~~f~~~~~~------ 400 (809)
..+|..+|..+++.++... +..+...+.. ..+ +.|...+..-++.+.+..+.+-|.++-.-....
T Consensus 312 LsSyh~iik~f~re~dp~k~as~~i~dI~N~ltGK~fkp~~p~d~~FF~~AM~Ic~~l~d~~LA~~v~~ll~tg~N~~~i 391 (625)
T KOG4422|consen 312 LSSYHLIIKNFKRESDPQKVASSWINDIQNSLTGKTFKPITPTDNKFFQSAMSICSSLRDLELAYQVHGLLKTGDNWKFI 391 (625)
T ss_pred hhhHHHHHHHhcccCCchhhhHHHHHHHHHhhccCcccCCCCchhHHHHHHHHHHHHhhhHHHHHHHHHHHHcCCchhhc
Confidence 6666666666655555433 2222222222 111 123334444455555556666555554443321
Q ss_pred -----CHhHHHHHHHHHHhcCCHHHHHHHHHHHhhcCCccCHhHHHHHHHHHhcccchhHHHHHHHHHHHhCCCCChhHH
Q 003584 401 -----DVISWTSLITGCAYHGSYEEALKYFSDMRISGICPDHVVVSSILSACAELTVLEFGQQVHAVFLKSGGCSSLSVD 475 (809)
Q Consensus 401 -----~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~~~~~~a~~~~~~~~~~g~~~~~~~~ 475 (809)
...-|..+....++....+.-+..|+.|.-.-+-|+..+...+++|....+.++-..+++..++..|........
T Consensus 392 g~~~~~~fYyr~~~~licq~es~~~~~~~Y~~lVP~~y~p~~~~m~~~lrA~~v~~~~e~ipRiw~D~~~~ght~r~~l~ 471 (625)
T KOG4422|consen 392 GPDQHRNFYYRKFFDLICQMESIDVTLKWYEDLVPSAYFPHSQTMIHLLRALDVANRLEVIPRIWKDSKEYGHTFRSDLR 471 (625)
T ss_pred ChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccceecCCchhHHHHHHHHhhcCcchhHHHHHHHHHHhhhhhhHHHH
Confidence 123455666777788888888888888888777888888888888888888888888888888776643332222
Q ss_pred hHHHHHHHhcCCHHHHHHHHHhcCCCCeeechHHHHHHHhc-CChHHH-HHHHHHHHHCCCCCCHHHHHHHHHHHHccCC
Q 003584 476 NSLVLVYAKCGCINDANRVFDSMHTRDVITWTALIMGCAQN-GKGKEA-LQFYDQMLARGTKPDYITFVGLLFACSHAGL 553 (809)
Q Consensus 476 ~~li~~y~k~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~-g~~~~A-~~l~~~m~~~g~~pd~~t~~~ll~a~~~~g~ 553 (809)
.-+...+++.. +.|+...-..+-...++. -++.++ ...-.+|.+..+.|. ..+.++.-+.+.|.
T Consensus 472 eeil~~L~~~k------------~hp~tp~r~Ql~~~~ak~aad~~e~~e~~~~R~r~~~~~~t--~l~~ia~Ll~R~G~ 537 (625)
T KOG4422|consen 472 EEILMLLARDK------------LHPLTPEREQLQVAFAKCAADIKEAYESQPIRQRAQDWPAT--SLNCIAILLLRAGR 537 (625)
T ss_pred HHHHHHHhcCC------------CCCCChHHHHHHHHHHHHHHHHHHHHHhhHHHHHhccCChh--HHHHHHHHHHHcch
Confidence 22222221111 022212111111111110 011111 122234444434333 34444455677788
Q ss_pred HHHHHHHHHHhHHhhCCCCChHHHH---HHHHHHhhcCCHHHHHHHHHhCc
Q 003584 554 AENARWYFESMDKVYGIKPGPDHYA---CMIDLLGRSGKLIEAKALLDQMV 601 (809)
Q Consensus 554 ~~~a~~~~~~m~~~~~~~p~~~~~~---~li~~~~~~g~~~eA~~~~~~m~ 601 (809)
.++|.+++..+.+..+-.|.....+ -+++.-.+....-.|...++-|.
T Consensus 538 ~qkA~e~l~l~~~~~~~ip~~p~lnAm~El~d~a~~~~spsqA~~~lQ~a~ 588 (625)
T KOG4422|consen 538 TQKAWEMLGLFLRKHNKIPRSPLLNAMAELMDSAKVSNSPSQAIEVLQLAS 588 (625)
T ss_pred HHHHHHHHHHHHhcCCcCCCCcchhhHHHHHHHHHhcCCHHHHHHHHHHHH
Confidence 8888888877755544445444444 34455556677777777777664
No 29
>KOG0495 consensus HAT repeat protein [RNA processing and modification]
Probab=99.69 E-value=2.7e-11 Score=126.05 Aligned_cols=495 Identities=14% Similarity=0.084 Sum_probs=297.4
Q ss_pred HHhhcCCCchHHHHHHHHHHHhCCCCchHHHHHHHHhhhcCCChhHHHHHhhhCCCC--CCcccHHHHHHHHhhCCChHH
Q 003584 141 RLCSLKGLLQRGEQFHGYAIKTCFDLNAFVVTGLVDMYAKCKCIFEAEYLFKMFPDG--KNHVAWTTMITGYSQNGYGFK 218 (809)
Q Consensus 141 ~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~y~~~g~~~~A~~~f~~~~~~--~~~~~~~~li~~~~~~g~~~~ 218 (809)
++.....+.+.|+.++...++.- +.+.. |.-+|++...++.|.+++.+..+. .+...|.+-...--.+|+.+.
T Consensus 384 KaAVelE~~~darilL~rAvecc-p~s~d----LwlAlarLetYenAkkvLNkaRe~iptd~~IWitaa~LEE~ngn~~m 458 (913)
T KOG0495|consen 384 KAAVELEEPEDARILLERAVECC-PQSMD----LWLALARLETYENAKKVLNKAREIIPTDREIWITAAKLEEANGNVDM 458 (913)
T ss_pred HHHHhccChHHHHHHHHHHHHhc-cchHH----HHHHHHHHHHHHHHHHHHHHHHhhCCCChhHHHHHHHHHHhcCCHHH
Confidence 44555666667777777777654 22333 334456666778888888654431 466778777777778888888
Q ss_pred HHHHHHH----HHHCCCCCCcchHHHHHHHHhccCChHHHHHHHHHHHHhCCCC--chhHHHHHHHHHHhCCChHHHHHH
Q 003584 219 AIECFRD----MRVEGVESNQFTFPSILTACAAVSARDFGAQVHGCILSSGFEA--NVYVQSALIDMYAKCGDLDSARRL 292 (809)
Q Consensus 219 A~~l~~~----m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~--~~~~~~~Li~~y~~~g~~~~A~~~ 292 (809)
...+..+ +...|+..|...|..=..+|-..|..-....+....+..|++. -..+|+.-.+.+.+.+.++-|+.+
T Consensus 459 v~kii~rgl~~L~~ngv~i~rdqWl~eAe~~e~agsv~TcQAIi~avigigvEeed~~~tw~~da~~~~k~~~~~carAV 538 (913)
T KOG0495|consen 459 VEKIIDRGLSELQANGVEINRDQWLKEAEACEDAGSVITCQAIIRAVIGIGVEEEDRKSTWLDDAQSCEKRPAIECARAV 538 (913)
T ss_pred HHHHHHHHHHHHhhcceeecHHHHHHHHHHHhhcCChhhHHHHHHHHHhhccccchhHhHHhhhHHHHHhcchHHHHHHH
Confidence 7777654 4567888888888888888888888888888888888888653 245777778888888888888888
Q ss_pred HhccC---CCCeeeHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCcccHHHHHHHhhcCCChHHHHHHHHHHHHhccCC
Q 003584 293 LEYSE---IDNEVSWNSMIVGFARQGFHKEALSLFKKMHARDIKIDDFTYPSVLNCFASNIDLNNAKSVHSLIVKTGFEG 369 (809)
Q Consensus 293 f~~~~---~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~i~~~~~~~g~~~ 369 (809)
|.... ..+...|...+..--..|..++-..+|++....-++ ....+.......-..|+...|+.++..+.+.. +.
T Consensus 539 ya~alqvfp~k~slWlra~~~ek~hgt~Esl~Allqkav~~~pk-ae~lwlM~ake~w~agdv~~ar~il~~af~~~-pn 616 (913)
T KOG0495|consen 539 YAHALQVFPCKKSLWLRAAMFEKSHGTRESLEALLQKAVEQCPK-AEILWLMYAKEKWKAGDVPAARVILDQAFEAN-PN 616 (913)
T ss_pred HHHHHhhccchhHHHHHHHHHHHhcCcHHHHHHHHHHHHHhCCc-chhHHHHHHHHHHhcCCcHHHHHHHHHHHHhC-CC
Confidence 86544 235566777666666678888888888888765322 22333333334445566666666666666554 23
Q ss_pred chHHHHHHHHHHHhcCCHHHHHHHHhhcCC--CCHhHHHHHHHHHHhcCCHHHHHHHHHHHhhcCCccCHhHHHHHHHHH
Q 003584 370 YKFVNNALIDMYAKQGNLDCAFMVFNLMQD--KDVISWTSLITGCAYHGSYEEALKYFSDMRISGICPDHVVVSSILSAC 447 (809)
Q Consensus 370 ~~~~~~~li~~y~~~g~~~~A~~~f~~~~~--~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~ 447 (809)
+..+|-+-+..-....+++.|+.+|.+... ++...|.--+...--.+..++|++++++..+. -|+..
T Consensus 617 seeiwlaavKle~en~e~eraR~llakar~~sgTeRv~mKs~~~er~ld~~eeA~rllEe~lk~--fp~f~--------- 685 (913)
T KOG0495|consen 617 SEEIWLAAVKLEFENDELERARDLLAKARSISGTERVWMKSANLERYLDNVEEALRLLEEALKS--FPDFH--------- 685 (913)
T ss_pred cHHHHHHHHHHhhccccHHHHHHHHHHHhccCCcchhhHHHhHHHHHhhhHHHHHHHHHHHHHh--CCchH---------
Confidence 555666666666666666666666665543 34444544444444455666666666555543 34322
Q ss_pred hcccchhHHHHHHHHHHHhCCCCChhHHhHHHHHHHhcCCHHHHHHHHHhcCC--C-CeeechHHHHHHHhcCChHHHHH
Q 003584 448 AELTVLEFGQQVHAVFLKSGGCSSLSVDNSLVLVYAKCGCINDANRVFDSMHT--R-DVITWTALIMGCAQNGKGKEALQ 524 (809)
Q Consensus 448 ~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~y~k~g~~~~A~~~~~~~~~--~-~~~~~~~li~~~~~~g~~~~A~~ 524 (809)
..|-.+.+.|-+.++++.|.+.|..-.+ | .+..|-.+...--+.|..-.|..
T Consensus 686 -------------------------Kl~lmlGQi~e~~~~ie~aR~aY~~G~k~cP~~ipLWllLakleEk~~~~~rAR~ 740 (913)
T KOG0495|consen 686 -------------------------KLWLMLGQIEEQMENIEMAREAYLQGTKKCPNSIPLWLLLAKLEEKDGQLVRARS 740 (913)
T ss_pred -------------------------HHHHHHhHHHHHHHHHHHHHHHHHhccccCCCCchHHHHHHHHHHHhcchhhHHH
Confidence 2333334444444444444444443331 2 22344444444444445555555
Q ss_pred HHHHHHHCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHhHHhhCCCCChHHHHHHHHHHhhcCCHHHHHHHHHhCcCCC
Q 003584 525 FYDQMLARGTKPDYITFVGLLFACSHAGLAENARWYFESMDKVYGIKPGPDHYACMIDLLGRSGKLIEAKALLDQMVGEP 604 (809)
Q Consensus 525 l~~~m~~~g~~pd~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~~~~~~~li~~~~~~g~~~eA~~~~~~m~~~p 604 (809)
+|++....+ +-|..-|...+..=.+.|..++|..+.....+ ..+.+...|.--|-+..+.++-..+.+.+++.. .
T Consensus 741 ildrarlkN-Pk~~~lwle~Ir~ElR~gn~~~a~~lmakALQ--ecp~sg~LWaEaI~le~~~~rkTks~DALkkce--~ 815 (913)
T KOG0495|consen 741 ILDRARLKN-PKNALLWLESIRMELRAGNKEQAELLMAKALQ--ECPSSGLLWAEAIWLEPRPQRKTKSIDALKKCE--H 815 (913)
T ss_pred HHHHHHhcC-CCcchhHHHHHHHHHHcCCHHHHHHHHHHHHH--hCCccchhHHHHHHhccCcccchHHHHHHHhcc--C
Confidence 555444431 22333444445555555555555554444443 233333445555555555555555555555543 4
Q ss_pred CHHHHHHHHHHHHhcCChhHHHHHHHHHhccCCCCCccHHhHhhhhhhcCChhHHHHHHHHHHhCCCccCCceeEEEECC
Q 003584 605 DATVWKALLSACRVHGDLELGERAANNLFELEPMNAMPYVQLSNMYSTAGKWEDAARVRKLMKSRGIRKEPGCSWVETNS 684 (809)
Q Consensus 605 ~~~~~~~ll~a~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~s~~~~~~ 684 (809)
|+.+.-+....+.....++.|..-|++++..+|++..++..+...+...|.-++-.+++.+.... .|..|..|+.+..
T Consensus 816 dphVllaia~lfw~e~k~~kar~Wf~Ravk~d~d~GD~wa~fykfel~hG~eed~kev~~~c~~~--EP~hG~~W~avSK 893 (913)
T KOG0495|consen 816 DPHVLLAIAKLFWSEKKIEKAREWFERAVKKDPDNGDAWAWFYKFELRHGTEEDQKEVLKKCETA--EPTHGELWQAVSK 893 (913)
T ss_pred CchhHHHHHHHHHHHHHHHHHHHHHHHHHccCCccchHHHHHHHHHHHhCCHHHHHHHHHHHhcc--CCCCCcHHHHHhh
Confidence 55555555666666667777777777777777777777777777777777777777777666544 3455666766555
Q ss_pred E
Q 003584 685 Q 685 (809)
Q Consensus 685 ~ 685 (809)
.
T Consensus 894 ~ 894 (913)
T KOG0495|consen 894 D 894 (913)
T ss_pred h
Confidence 4
No 30
>KOG2076 consensus RNA polymerase III transcription factor TFIIIC [Transcription]
Probab=99.66 E-value=2.8e-11 Score=131.23 Aligned_cols=610 Identities=13% Similarity=0.117 Sum_probs=335.1
Q ss_pred hcCCChHHHHHHHHhcCCC---CcchHHHHHHHHHccCChhHHHHHhh---hCCCCCcchHHHHHHHHHcCCCchhHHHH
Q 003584 47 SNSGEIDEAGQLFEKMSDR---DGFTWNTMIAAYANSGRLREAKKLFN---ETPFKNFFTWSSLIYGYSNYGLDIEAFEL 120 (809)
Q Consensus 47 ~~~~~~~~a~~~~~~~~~~---~~~~~~~li~~~~~~g~~~~A~~~f~---~~~~~~~~~~~~li~~~~~~g~~~~A~~~ 120 (809)
...|++++|.+++...+.. +...|-+|-..|-..|+.+++...+= .....|..-|-.+-.-..+.|++..|.-.
T Consensus 150 farg~~eeA~~i~~EvIkqdp~~~~ay~tL~~IyEqrGd~eK~l~~~llAAHL~p~d~e~W~~ladls~~~~~i~qA~~c 229 (895)
T KOG2076|consen 150 FARGDLEEAEEILMEVIKQDPRNPIAYYTLGEIYEQRGDIEKALNFWLLAAHLNPKDYELWKRLADLSEQLGNINQARYC 229 (895)
T ss_pred HHhCCHHHHHHHHHHHHHhCccchhhHHHHHHHHHHcccHHHHHHHHHHHHhcCCCChHHHHHHHHHHHhcccHHHHHHH
Confidence 3449999999998887764 45678899999999999999887663 34455667888888888899999999999
Q ss_pred HHHHHHcCCCCCcc-cHHHHHHHhhcCCCchHHHHHHHHHHHhCCCCchHHHHH----HHHhhhcCCChhHHHHHhhhCC
Q 003584 121 FWQMQLEGYRPSQY-TLDNVLRLCSLKGLLQRGEQFHGYAIKTCFDLNAFVVTG----LVDMYAKCKCIFEAEYLFKMFP 195 (809)
Q Consensus 121 ~~~m~~~g~~p~~~-t~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~----li~~y~~~g~~~~A~~~f~~~~ 195 (809)
|.+.++.. |+.. .+---...|-+.|+...|..-+.++.....+.|..-.-. .+..|...++-+.|.+.++...
T Consensus 230 y~rAI~~~--p~n~~~~~ers~L~~~~G~~~~Am~~f~~l~~~~p~~d~er~~d~i~~~~~~~~~~~~~e~a~~~le~~~ 307 (895)
T KOG2076|consen 230 YSRAIQAN--PSNWELIYERSSLYQKTGDLKRAMETFLQLLQLDPPVDIERIEDLIRRVAHYFITHNERERAAKALEGAL 307 (895)
T ss_pred HHHHHhcC--CcchHHHHHHHHHHHHhChHHHHHHHHHHHHhhCCchhHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHH
Confidence 99988743 4442 222334567788999999988888887764333322222 3455666677788888887654
Q ss_pred CC----CCcccHHHHHHHHhhCCChHHHHHHHHHHHHCCCCCCc----------------------chHH----HHHHHH
Q 003584 196 DG----KNHVAWTTMITGYSQNGYGFKAIECFRDMRVEGVESNQ----------------------FTFP----SILTAC 245 (809)
Q Consensus 196 ~~----~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~----------------------~t~~----~ll~~~ 245 (809)
.. -+...+|.++..|.+...++.|......+......+|. ..|. -+.-++
T Consensus 308 s~~~~~~~~ed~ni~ael~l~~~q~d~~~~~i~~~~~r~~e~d~~e~~~~~~~~~~~~~~~~~~~~~s~~l~v~rl~icL 387 (895)
T KOG2076|consen 308 SKEKDEASLEDLNILAELFLKNKQSDKALMKIVDDRNRESEKDDSEWDTDERRREEPNALCEVGKELSYDLRVIRLMICL 387 (895)
T ss_pred hhccccccccHHHHHHHHHHHhHHHHHhhHHHHHHhccccCCChhhhhhhhhccccccccccCCCCCCccchhHhHhhhh
Confidence 41 24456889999999999999999988888762222222 1111 122233
Q ss_pred hccCChHHHHHHHHHHHHhC--CCCchhHHHHHHHHHHhCCChHHHHHHHhccCC----CCeeeHHHHHHHHHhcCChhH
Q 003584 246 AAVSARDFGAQVHGCILSSG--FEANVYVQSALIDMYAKCGDLDSARRLLEYSEI----DNEVSWNSMIVGFARQGFHKE 319 (809)
Q Consensus 246 ~~~~~~~~a~~~~~~~~~~g--~~~~~~~~~~Li~~y~~~g~~~~A~~~f~~~~~----~~~~~~~~li~~~~~~g~~~~ 319 (809)
......+....+...+.+.. ...++..+.-+.++|...|++.+|.++|..+.. .+...|--+...|...|..++
T Consensus 388 ~~L~~~e~~e~ll~~l~~~n~~~~d~~dL~~d~a~al~~~~~~~~Al~~l~~i~~~~~~~~~~vw~~~a~c~~~l~e~e~ 467 (895)
T KOG2076|consen 388 VHLKERELLEALLHFLVEDNVWVSDDVDLYLDLADALTNIGKYKEALRLLSPITNREGYQNAFVWYKLARCYMELGEYEE 467 (895)
T ss_pred hcccccchHHHHHHHHHHhcCChhhhHHHHHHHHHHHHhcccHHHHHHHHHHHhcCccccchhhhHHHHHHHHHHhhHHH
Confidence 45555556666666666665 334556677777777777888888777766653 345667777777777777777
Q ss_pred HHHHHHHHHHCCCCCCc-ccHHHHHHHhhcCCChHHHHHHHHHHH--------HhccCCchHHHHHHHHHHHhcCCHHHH
Q 003584 320 ALSLFKKMHARDIKIDD-FTYPSVLNCFASNIDLNNAKSVHSLIV--------KTGFEGYKFVNNALIDMYAKQGNLDCA 390 (809)
Q Consensus 320 A~~~~~~m~~~g~~p~~-~t~~~ll~~~~~~~~~~~a~~i~~~~~--------~~g~~~~~~~~~~li~~y~~~g~~~~A 390 (809)
|.+.|.+.... .|+. ..-.++-..+.+.|+.++|.+.++.+. ..+..|+..+.--..+.|.+.|+.++=
T Consensus 468 A~e~y~kvl~~--~p~~~D~Ri~Lasl~~~~g~~EkalEtL~~~~~~D~~~~e~~a~~~e~ri~~~r~d~l~~~gk~E~f 545 (895)
T KOG2076|consen 468 AIEFYEKVLIL--APDNLDARITLASLYQQLGNHEKALETLEQIINPDGRNAEACAWEPERRILAHRCDILFQVGKREEF 545 (895)
T ss_pred HHHHHHHHHhc--CCCchhhhhhHHHHHHhcCCHHHHHHHHhcccCCCccchhhccccHHHHHHHHHHHHHHHhhhHHHH
Confidence 77777777664 2332 223344445566677777777776643 223344455555556666666666553
Q ss_pred HHHHhhcCCC--------------------------CHhHHHHHHHHHHhcCCHHHHHHH------HHHHhhcCCccCH-
Q 003584 391 FMVFNLMQDK--------------------------DVISWTSLITGCAYHGSYEEALKY------FSDMRISGICPDH- 437 (809)
Q Consensus 391 ~~~f~~~~~~--------------------------~~~~~~~li~~~~~~g~~~~A~~~------~~~m~~~g~~p~~- 437 (809)
..+-..|..+ ....--..+.+-.+.++.....+- +.--...|+.-+.
T Consensus 546 i~t~~~Lv~~~~~~~~~f~~~~k~r~~~~~~~~~~~~~~~~~~~~~~~~k~~~~~~~~~~l~d~~~~~~~e~~~Lsiddw 625 (895)
T KOG2076|consen 546 INTASTLVDDFLKKRYIFPRNKKKRRRAIAGTTSKRYSELLKQIIRAREKATDDNVMEKALSDGTEFRAVELRGLSIDDW 625 (895)
T ss_pred HHHHHHHHHHHHHHHHhcchHHHHHHHhhccccccccchhHHHHHHHHhccCchHHhhhcccchhhhhhhhhccCcHHHH
Confidence 3322222110 000111111111111111100000 0000001111111
Q ss_pred -hHHHHHHHHHhcccchhHHHHHHHHHHHhCC-CCCh----hHHhHHHHHHHhcCCHHHHHHHHHhcCCC-----C---e
Q 003584 438 -VVVSSILSACAELTVLEFGQQVHAVFLKSGG-CSSL----SVDNSLVLVYAKCGCINDANRVFDSMHTR-----D---V 503 (809)
Q Consensus 438 -~t~~~ll~a~~~~~~~~~a~~~~~~~~~~g~-~~~~----~~~~~li~~y~k~g~~~~A~~~~~~~~~~-----~---~ 503 (809)
.-+.-++.+.++.+..++|..+...+..... ..+. ..-...+.+....+++..|...+..|... + .
T Consensus 626 fel~~e~i~~L~k~~r~qeAl~vv~~a~~~~~f~~~~~~~k~l~~~~l~~s~~~~d~~~a~~~lR~~i~~~~~~~~~~q~ 705 (895)
T KOG2076|consen 626 FELFRELILSLAKLQRVQEALSVVFTALEAYIFFQDSEIRKELQFLGLKASLYARDPGDAFSYLRSVITQFQFYLDVYQL 705 (895)
T ss_pred HHHHHHHHHHHHHHHhHHHHHHHHHHHHhhhhhhccHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHhhhhhhHHH
Confidence 1122233344444444444444444333211 1111 11122233333344444444444444321 1 1
Q ss_pred eechHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHH--HHHHHccCCHHHHHHHHHHhHHhhCCCCChHHHH-HH
Q 003584 504 ITWTALIMGCAQNGKGKEALQFYDQMLARGTKPDYITFVGL--LFACSHAGLAENARWYFESMDKVYGIKPGPDHYA-CM 580 (809)
Q Consensus 504 ~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~pd~~t~~~l--l~a~~~~g~~~~a~~~~~~m~~~~~~~p~~~~~~-~l 580 (809)
..||...+.+.+.|+-.--..++..... .+|+......+ ..-....+.+.-|.+++-... ...|+...++ ||
T Consensus 706 ~l~n~~~s~~~~~~q~v~~~R~~~~~~~--~~~~~~~~l~~i~gh~~~~~~s~~~Al~~y~ra~---~~~pd~Pl~nl~l 780 (895)
T KOG2076|consen 706 NLWNLDFSYFSKYGQRVCYLRLIMRLLV--KNKDDTPPLALIYGHNLFVNASFKHALQEYMRAF---RQNPDSPLINLCL 780 (895)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhc--cCccCCcceeeeechhHhhccchHHHHHHHHHHH---HhCCCCcHHHHHH
Confidence 2344333333333332222222222111 11221111111 111233456666776655443 3345533332 22
Q ss_pred HHHHh----------hcCCHHHHHHHHHhCcC--CC--CHHHHHHHHHHHHhcCChhHHHHHHHHHhccCCCCCc-----
Q 003584 581 IDLLG----------RSGKLIEAKALLDQMVG--EP--DATVWKALLSACRVHGDLELGERAANNLFELEPMNAM----- 641 (809)
Q Consensus 581 i~~~~----------~~g~~~eA~~~~~~m~~--~p--~~~~~~~ll~a~~~~g~~~~A~~~~~~~~~~~p~~~~----- 641 (809)
.-++. |.-.+-.+..++.+... .+ -..++-.++.+|...|-...|+..|++++++.|.+..
T Consensus 781 glafih~a~qr~v~~Rh~~i~qG~afL~RY~~lR~~~~~QEa~YNigRayh~~gl~~LA~~YYekvL~~~p~~~~~~~~d 860 (895)
T KOG2076|consen 781 GLAFIHLALQRRVSNRHAQIAQGFAFLKRYKELRRCEEKQEAFYNIGRAYHQIGLVHLAVSYYEKVLEVSPKDVTDPKED 860 (895)
T ss_pred HHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHhhccHHHHHHHHHHHHHHHHcccHHHHHHHHHHHhCCCccccccccCC
Confidence 22221 11223344455443332 12 3346777888999999999999999999998765332
Q ss_pred -------cHHhHhhhhhhcCChhHHHHHHHH
Q 003584 642 -------PYVQLSNMYSTAGKWEDAARVRKL 665 (809)
Q Consensus 642 -------~~~~l~~~~~~~g~~~~A~~~~~~ 665 (809)
+-..|.-+|.+.|+..-|.+++++
T Consensus 861 ~~dLrkeAA~NL~LIY~~SGn~~lArqil~k 891 (895)
T KOG2076|consen 861 NYDLRKEAAYNLHLIYKKSGNMQLARQILEK 891 (895)
T ss_pred cccHHHHHHhhhhhhhccCCcHHHHHHHHHh
Confidence 233567788999999888887764
No 31
>KOG0495 consensus HAT repeat protein [RNA processing and modification]
Probab=99.65 E-value=2.5e-10 Score=119.06 Aligned_cols=447 Identities=12% Similarity=0.041 Sum_probs=310.7
Q ss_pred CChHHHHHHHHHHHHCCCCCCcchHHHHHHHHhccCChHHHHHHHHHHHHhCCCCchhHHHHHHHHHHhCCChHHHHHHH
Q 003584 214 GYGFKAIECFRDMRVEGVESNQFTFPSILTACAAVSARDFGAQVHGCILSSGFEANVYVQSALIDMYAKCGDLDSARRLL 293 (809)
Q Consensus 214 g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~Li~~y~~~g~~~~A~~~f 293 (809)
.+.+.|.-++.+..+- -|.. .-+.-+++++..++.|+.++....+. ++.+..+|.+-...=-..|+.+...++.
T Consensus 390 E~~~darilL~rAvec--cp~s---~dLwlAlarLetYenAkkvLNkaRe~-iptd~~IWitaa~LEE~ngn~~mv~kii 463 (913)
T KOG0495|consen 390 EEPEDARILLERAVEC--CPQS---MDLWLALARLETYENAKKVLNKAREI-IPTDREIWITAAKLEEANGNVDMVEKII 463 (913)
T ss_pred cChHHHHHHHHHHHHh--ccch---HHHHHHHHHHHHHHHHHHHHHHHHhh-CCCChhHHHHHHHHHHhcCCHHHHHHHH
Confidence 4444555555555442 2211 12334455555666666666665544 3455555555555555566666666665
Q ss_pred hccC--------CCCeeeHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCC--cccHHHHHHHhhcCCChHHHHHHHHHHH
Q 003584 294 EYSE--------IDNEVSWNSMIVGFARQGFHKEALSLFKKMHARDIKID--DFTYPSVLNCFASNIDLNNAKSVHSLIV 363 (809)
Q Consensus 294 ~~~~--------~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~--~~t~~~ll~~~~~~~~~~~a~~i~~~~~ 363 (809)
++.. .-+...|-.=...+-..|..--+..+......-|+.-. ..|+......|.+.+.++-++.+|...+
T Consensus 464 ~rgl~~L~~ngv~i~rdqWl~eAe~~e~agsv~TcQAIi~avigigvEeed~~~tw~~da~~~~k~~~~~carAVya~al 543 (913)
T KOG0495|consen 464 DRGLSELQANGVEINRDQWLKEAEACEDAGSVITCQAIIRAVIGIGVEEEDRKSTWLDDAQSCEKRPAIECARAVYAHAL 543 (913)
T ss_pred HHHHHHHhhcceeecHHHHHHHHHHHhhcCChhhHHHHHHHHHhhccccchhHhHHhhhHHHHHhcchHHHHHHHHHHHH
Confidence 4322 11223344444455555655555666666655554322 3567777778888888888888888887
Q ss_pred HhccCCchHHHHHHHHHHHhcCCHHHHHHHHhhcCC---CCHhHHHHHHHHHHhcCCHHHHHHHHHHHhhcCCccCHhHH
Q 003584 364 KTGFEGYKFVNNALIDMYAKQGNLDCAFMVFNLMQD---KDVISWTSLITGCAYHGSYEEALKYFSDMRISGICPDHVVV 440 (809)
Q Consensus 364 ~~g~~~~~~~~~~li~~y~~~g~~~~A~~~f~~~~~---~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~ 440 (809)
+. ++.+..+|...+..--..|..++-..+|++... +..+.|-.....+-..|+...|..++.+..+... -+...+
T Consensus 544 qv-fp~k~slWlra~~~ek~hgt~Esl~Allqkav~~~pkae~lwlM~ake~w~agdv~~ar~il~~af~~~p-nseeiw 621 (913)
T KOG0495|consen 544 QV-FPCKKSLWLRAAMFEKSHGTRESLEALLQKAVEQCPKAEILWLMYAKEKWKAGDVPAARVILDQAFEANP-NSEEIW 621 (913)
T ss_pred hh-ccchhHHHHHHHHHHHhcCcHHHHHHHHHHHHHhCCcchhHHHHHHHHHHhcCCcHHHHHHHHHHHHhCC-CcHHHH
Confidence 65 356667777777766677888888888887654 3557788778888888999999998888877642 255667
Q ss_pred HHHHHHHhcccchhHHHHHHHHHHHhCCCCChhHHhHHHHHHHhcCCHHHHHHHHHhcCC--CCe-eechHHHHHHHhcC
Q 003584 441 SSILSACAELTVLEFGQQVHAVFLKSGGCSSLSVDNSLVLVYAKCGCINDANRVFDSMHT--RDV-ITWTALIMGCAQNG 517 (809)
Q Consensus 441 ~~ll~a~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~y~k~g~~~~A~~~~~~~~~--~~~-~~~~~li~~~~~~g 517 (809)
...+..-.....++.|+.++...... .++..+|.--+...--.+..++|.+++++..+ |+- ..|-.+...+-+.+
T Consensus 622 laavKle~en~e~eraR~llakar~~--sgTeRv~mKs~~~er~ld~~eeA~rllEe~lk~fp~f~Kl~lmlGQi~e~~~ 699 (913)
T KOG0495|consen 622 LAAVKLEFENDELERARDLLAKARSI--SGTERVWMKSANLERYLDNVEEALRLLEEALKSFPDFHKLWLMLGQIEEQME 699 (913)
T ss_pred HHHHHHhhccccHHHHHHHHHHHhcc--CCcchhhHHHhHHHHHhhhHHHHHHHHHHHHHhCCchHHHHHHHhHHHHHHH
Confidence 77777777888889999988887664 45666666666666778999999999988774 443 46777778888899
Q ss_pred ChHHHHHHHHHHHHCCCCCCHH-HHHHHHHHHHccCCHHHHHHHHHHhHHhhCCCCChHHHHHHHHHHhhcCCHHHHHHH
Q 003584 518 KGKEALQFYDQMLARGTKPDYI-TFVGLLFACSHAGLAENARWYFESMDKVYGIKPGPDHYACMIDLLGRSGKLIEAKAL 596 (809)
Q Consensus 518 ~~~~A~~l~~~m~~~g~~pd~~-t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~~~~~~~li~~~~~~g~~~eA~~~ 596 (809)
+.+.|.+.|..-.+ .-|+.. .|..|...=.+.|.+-.|+.+++.... .-+.+...|-..|.+=.|.|+.+.|..+
T Consensus 700 ~ie~aR~aY~~G~k--~cP~~ipLWllLakleEk~~~~~rAR~ildrarl--kNPk~~~lwle~Ir~ElR~gn~~~a~~l 775 (913)
T KOG0495|consen 700 NIEMAREAYLQGTK--KCPNSIPLWLLLAKLEEKDGQLVRARSILDRARL--KNPKNALLWLESIRMELRAGNKEQAELL 775 (913)
T ss_pred HHHHHHHHHHhccc--cCCCCchHHHHHHHHHHHhcchhhHHHHHHHHHh--cCCCcchhHHHHHHHHHHcCCHHHHHHH
Confidence 99999888876555 357665 455555556778899999999998764 3445678899999999999999999999
Q ss_pred HHhCcCC-C-CHHHHHHHHHHHHhcCChhHHHHHHHHHhccCCCCCccHHhHhhhhhhcCChhHHHHHHHHHHhCCCccC
Q 003584 597 LDQMVGE-P-DATVWKALLSACRVHGDLELGERAANNLFELEPMNAMPYVQLSNMYSTAGKWEDAARVRKLMKSRGIRKE 674 (809)
Q Consensus 597 ~~~m~~~-p-~~~~~~~ll~a~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~~~ 674 (809)
+.+...+ | +...|..-|...-..++-.....+++ .-..|+.....++.++....+++.|.+.|.+....+. +
T Consensus 776 makALQecp~sg~LWaEaI~le~~~~rkTks~DALk----kce~dphVllaia~lfw~e~k~~kar~Wf~Ravk~d~--d 849 (913)
T KOG0495|consen 776 MAKALQECPSSGLLWAEAIWLEPRPQRKTKSIDALK----KCEHDPHVLLAIAKLFWSEKKIEKAREWFERAVKKDP--D 849 (913)
T ss_pred HHHHHHhCCccchhHHHHHHhccCcccchHHHHHHH----hccCCchhHHHHHHHHHHHHHHHHHHHHHHHHHccCC--c
Confidence 9888764 4 45589888888877777555544444 3445677888899999999999999999999887654 4
Q ss_pred CceeEE
Q 003584 675 PGCSWV 680 (809)
Q Consensus 675 ~~~s~~ 680 (809)
-|-.|.
T Consensus 850 ~GD~wa 855 (913)
T KOG0495|consen 850 NGDAWA 855 (913)
T ss_pred cchHHH
Confidence 454553
No 32
>KOG4422 consensus Uncharacterized conserved protein [Function unknown]
Probab=99.63 E-value=2.3e-12 Score=127.41 Aligned_cols=298 Identities=15% Similarity=0.148 Sum_probs=185.7
Q ss_pred hHHHHHHHHhcCCChHHHHHHHHhcCCCCcc----hHHH---HHHHHHccCChh-------------------------H
Q 003584 38 DLNRALVDFSNSGEIDEAGQLFEKMSDRDGF----TWNT---MIAAYANSGRLR-------------------------E 85 (809)
Q Consensus 38 ~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~----~~~~---li~~~~~~g~~~-------------------------~ 85 (809)
+=++|++- ..+|.+.++.-++++|...+.. +--. |+..|.. .++- -
T Consensus 118 ~E~nL~km-IS~~EvKDs~ilY~~m~~e~~~vS~kvq~~L~~LV~~~Ns-~~~~~~E~~~Fv~~~~~~E~S~~sWK~G~v 195 (625)
T KOG4422|consen 118 TENNLLKM-ISSREVKDSCILYERMRSENVDVSEKVQLELFRLVTYYNS-SNVPFAEWEEFVGMRNFGEDSTSSWKSGAV 195 (625)
T ss_pred chhHHHHH-HhhcccchhHHHHHHHHhcCCCCCHHHHHHHHHHHHhhcC-CCCcchhHHHHhhccccccccccccccccH
Confidence 44555553 4567888888888888764322 1222 2222222 1111 1
Q ss_pred HHHHhhhCCCCCcchHHHHHHHHHcCCCchhHHHHHHHHHHcCCCCCcccHHHHHHHhhcCCCchHHHHHHHHHHHhCCC
Q 003584 86 AKKLFNETPFKNFFTWSSLIYGYSNYGLDIEAFELFWQMQLEGYRPSQYTLDNVLRLCSLKGLLQRGEQFHGYAIKTCFD 165 (809)
Q Consensus 86 A~~~f~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~ 165 (809)
|.-+| +...+...+|.+||.+.|+--..+.|.++|++..+...+.+..+|+.+|.+.+-. .++.+...|+...+.
T Consensus 196 AdL~~-E~~PKT~et~s~mI~Gl~K~~~~ERA~~L~kE~~~~k~kv~~~aFN~lI~~~S~~----~~K~Lv~EMisqkm~ 270 (625)
T KOG4422|consen 196 ADLLF-ETLPKTDETVSIMIAGLCKFSSLERARELYKEHRAAKGKVYREAFNGLIGASSYS----VGKKLVAEMISQKMT 270 (625)
T ss_pred HHHHH-hhcCCCchhHHHHHHHHHHHHhHHHHHHHHHHHHHhhheeeHHhhhhhhhHHHhh----ccHHHHHHHHHhhcC
Confidence 22223 3333455789999999999999999999999999988899999999999875433 347888889988889
Q ss_pred CchHHHHHHHHhhhcCCChhHHHHHhhh----CC---CCCCcccHHHHHHHHhhCCChHH-HHHHHHHHHH----CCCCC
Q 003584 166 LNAFVVTGLVDMYAKCKCIFEAEYLFKM----FP---DGKNHVAWTTMITGYSQNGYGFK-AIECFRDMRV----EGVES 233 (809)
Q Consensus 166 ~~~~~~~~li~~y~~~g~~~~A~~~f~~----~~---~~~~~~~~~~li~~~~~~g~~~~-A~~l~~~m~~----~g~~p 233 (809)
||.+++|++++..++.|.++.|++.+-+ |+ ..|...+|..+|..+.+.+++.+ |..+..+.+. ..++|
T Consensus 271 Pnl~TfNalL~c~akfg~F~~ar~aalqil~EmKeiGVePsLsSyh~iik~f~re~dp~k~as~~i~dI~N~ltGK~fkp 350 (625)
T KOG4422|consen 271 PNLFTFNALLSCAAKFGKFEDARKAALQILGEMKEIGVEPSLSSYHLIIKNFKRESDPQKVASSWINDIQNSLTGKTFKP 350 (625)
T ss_pred CchHhHHHHHHHHHHhcchHHHHHHHHHHHHHHHHhCCCcchhhHHHHHHHhcccCCchhhhHHHHHHHHHhhccCcccC
Confidence 9999999999999999988887665432 22 13666777777777777666643 3333333332 22222
Q ss_pred ----CcchHHHHHHHHhccCChHHHHHHHHHHHHhC----CCCchhHHHHHHHHHHhCCChHHHHHHHhccCCCCeeeHH
Q 003584 234 ----NQFTFPSILTACAAVSARDFGAQVHGCILSSG----FEANVYVQSALIDMYAKCGDLDSARRLLEYSEIDNEVSWN 305 (809)
Q Consensus 234 ----~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~g----~~~~~~~~~~Li~~y~~~g~~~~A~~~f~~~~~~~~~~~~ 305 (809)
|...|.+.+..|.+..+.+.|.++++.+.... +.|+. ....-|.
T Consensus 351 ~~p~d~~FF~~AM~Ic~~l~d~~LA~~v~~ll~tg~N~~~ig~~~----------------------------~~~fYyr 402 (625)
T KOG4422|consen 351 ITPTDNKFFQSAMSICSSLRDLELAYQVHGLLKTGDNWKFIGPDQ----------------------------HRNFYYR 402 (625)
T ss_pred CCCchhHHHHHHHHHHHHhhhHHHHHHHHHHHHcCCchhhcChHH----------------------------HHHHHHH
Confidence 33446666777777777777777766543321 11110 0011233
Q ss_pred HHHHHHHhcCChhHHHHHHHHHHHCCCCCCcccHHHHHHHhhcCCChHHHHHHHHHHHHhccCCc
Q 003584 306 SMIVGFARQGFHKEALSLFKKMHARDIKIDDFTYPSVLNCFASNIDLNNAKSVHSLIVKTGFEGY 370 (809)
Q Consensus 306 ~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~i~~~~~~~g~~~~ 370 (809)
.+....++....+.-+..|+.|.-.-.-|+..+...++++....+.++...+++..++..|...+
T Consensus 403 ~~~~licq~es~~~~~~~Y~~lVP~~y~p~~~~m~~~lrA~~v~~~~e~ipRiw~D~~~~ght~r 467 (625)
T KOG4422|consen 403 KFFDLICQMESIDVTLKWYEDLVPSAYFPHSQTMIHLLRALDVANRLEVIPRIWKDSKEYGHTFR 467 (625)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhccceecCCchhHHHHHHHHhhcCcchhHHHHHHHHHHhhhhhh
Confidence 44445555555666666666666555566666666666666666666666666666666554333
No 33
>KOG2076 consensus RNA polymerase III transcription factor TFIIIC [Transcription]
Probab=99.62 E-value=5.5e-11 Score=128.95 Aligned_cols=585 Identities=13% Similarity=0.041 Sum_probs=370.7
Q ss_pred HHccCChhHHHHHhhhCCCC---CcchHHHHHHHHHcCCCchhHHHHHHHHHHcCCCCCc-ccHHHHHHHhhcCCCchHH
Q 003584 77 YANSGRLREAKKLFNETPFK---NFFTWSSLIYGYSNYGLDIEAFELFWQMQLEGYRPSQ-YTLDNVLRLCSLKGLLQRG 152 (809)
Q Consensus 77 ~~~~g~~~~A~~~f~~~~~~---~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~-~t~~~ll~~~~~~~~~~~a 152 (809)
+++ |++++|.+++.++... +...|.+|...|-+.|+.++++..+-..-. +.|.. ..|..+-......|.+..|
T Consensus 150 far-g~~eeA~~i~~EvIkqdp~~~~ay~tL~~IyEqrGd~eK~l~~~llAAH--L~p~d~e~W~~ladls~~~~~i~qA 226 (895)
T KOG2076|consen 150 FAR-GDLEEAEEILMEVIKQDPRNPIAYYTLGEIYEQRGDIEKALNFWLLAAH--LNPKDYELWKRLADLSEQLGNINQA 226 (895)
T ss_pred HHh-CCHHHHHHHHHHHHHhCccchhhHHHHHHHHHHcccHHHHHHHHHHHHh--cCCCChHHHHHHHHHHHhcccHHHH
Confidence 444 9999999999998764 457899999999999999999877654443 44544 4677777888899999999
Q ss_pred HHHHHHHHHhCCCCchHHHHHHHHhhhcCCChhHHHHHhhhCCCCCCc-cc-------HHHHHHHHhhCCChHHHHHHHH
Q 003584 153 EQFHGYAIKTCFDLNAFVVTGLVDMYAKCKCIFEAEYLFKMFPDGKNH-VA-------WTTMITGYSQNGYGFKAIECFR 224 (809)
Q Consensus 153 ~~~~~~~~~~g~~~~~~~~~~li~~y~~~g~~~~A~~~f~~~~~~~~~-~~-------~~~li~~~~~~g~~~~A~~l~~ 224 (809)
.-++..+++.. +++....-.-..+|-+.|+...|...|.++-. .+. +. --.++..+...++.+.|++.++
T Consensus 227 ~~cy~rAI~~~-p~n~~~~~ers~L~~~~G~~~~Am~~f~~l~~-~~p~~d~er~~d~i~~~~~~~~~~~~~e~a~~~le 304 (895)
T KOG2076|consen 227 RYCYSRAIQAN-PSNWELIYERSSLYQKTGDLKRAMETFLQLLQ-LDPPVDIERIEDLIRRVAHYFITHNERERAAKALE 304 (895)
T ss_pred HHHHHHHHhcC-CcchHHHHHHHHHHHHhChHHHHHHHHHHHHh-hCCchhHHHHHHHHHHHHHHHHHhhHHHHHHHHHH
Confidence 99999999987 44555555567889999999999888877654 211 22 2234556667777799999888
Q ss_pred HHHHC-CCCCCcchHHHHHHHHhccCChHHHHHHHHHHHHh---------------------------CCCCchhH-HHH
Q 003584 225 DMRVE-GVESNQFTFPSILTACAAVSARDFGAQVHGCILSS---------------------------GFEANVYV-QSA 275 (809)
Q Consensus 225 ~m~~~-g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~---------------------------g~~~~~~~-~~~ 275 (809)
..... +-..+..+++.++..+.+....+.|....-..... ++.++..+ ...
T Consensus 305 ~~~s~~~~~~~~ed~ni~ael~l~~~q~d~~~~~i~~~~~r~~e~d~~e~~~~~~~~~~~~~~~~~~~~~s~~l~v~rl~ 384 (895)
T KOG2076|consen 305 GALSKEKDEASLEDLNILAELFLKNKQSDKALMKIVDDRNRESEKDDSEWDTDERRREEPNALCEVGKELSYDLRVIRLM 384 (895)
T ss_pred HHHhhccccccccHHHHHHHHHHHhHHHHHhhHHHHHHhccccCCChhhhhhhhhccccccccccCCCCCCccchhHhHh
Confidence 87652 22334455677777777777777776665555441 12333333 111
Q ss_pred HHHHHHhCCChHHHHHHHhcc----CCCCeeeHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCcccHHHHHHHhhcCCC
Q 003584 276 LIDMYAKCGDLDSARRLLEYS----EIDNEVSWNSMIVGFARQGFHKEALSLFKKMHARDIKIDDFTYPSVLNCFASNID 351 (809)
Q Consensus 276 Li~~y~~~g~~~~A~~~f~~~----~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~ 351 (809)
+--.-.+.+...++..-|-.. +..++..|..+..+|...|++.+|+.+|..+.....--+...|..+..++...|.
T Consensus 385 icL~~L~~~e~~e~ll~~l~~~n~~~~d~~dL~~d~a~al~~~~~~~~Al~~l~~i~~~~~~~~~~vw~~~a~c~~~l~e 464 (895)
T KOG2076|consen 385 ICLVHLKERELLEALLHFLVEDNVWVSDDVDLYLDLADALTNIGKYKEALRLLSPITNREGYQNAFVWYKLARCYMELGE 464 (895)
T ss_pred hhhhcccccchHHHHHHHHHHhcCChhhhHHHHHHHHHHHHhcccHHHHHHHHHHHhcCccccchhhhHHHHHHHHHHhh
Confidence 112222334444554444211 2234567888999999999999999999999887666667789999999999999
Q ss_pred hHHHHHHHHHHHHhccCCchHHHHHHHHHHHhcCCHHHHHHHHhhcCCCCHh------------HHHHHHHHHHhcCCHH
Q 003584 352 LNNAKSVHSLIVKTGFEGYKFVNNALIDMYAKQGNLDCAFMVFNLMQDKDVI------------SWTSLITGCAYHGSYE 419 (809)
Q Consensus 352 ~~~a~~i~~~~~~~g~~~~~~~~~~li~~y~~~g~~~~A~~~f~~~~~~~~~------------~~~~li~~~~~~g~~~ 419 (809)
.++|.+.++.++... +.+..+--.|...|-+.|+.++|.+++..+..+|.. .--.....|.+.|+.+
T Consensus 465 ~e~A~e~y~kvl~~~-p~~~D~Ri~Lasl~~~~g~~EkalEtL~~~~~~D~~~~e~~a~~~e~ri~~~r~d~l~~~gk~E 543 (895)
T KOG2076|consen 465 YEEAIEFYEKVLILA-PDNLDARITLASLYQQLGNHEKALETLEQIINPDGRNAEACAWEPERRILAHRCDILFQVGKRE 543 (895)
T ss_pred HHHHHHHHHHHHhcC-CCchhhhhhHHHHHHhcCCHHHHHHHHhcccCCCccchhhccccHHHHHHHHHHHHHHHhhhHH
Confidence 999999999998865 455566778888999999999999999998766521 1122345677788887
Q ss_pred HHHHHHHHHhhcC-----CccC-----------------HhHHHHHHHHHhcccchhHHHHHH------HHHHHhCCCCC
Q 003584 420 EALKYFSDMRISG-----ICPD-----------------HVVVSSILSACAELTVLEFGQQVH------AVFLKSGGCSS 471 (809)
Q Consensus 420 ~A~~~~~~m~~~g-----~~p~-----------------~~t~~~ll~a~~~~~~~~~a~~~~------~~~~~~g~~~~ 471 (809)
+=+..-..|.... +-|+ ..+.-.+..+-.+.++....++-. ......|+..+
T Consensus 544 ~fi~t~~~Lv~~~~~~~~~f~~~~k~r~~~~~~~~~~~~~~~~~~~~~~~~k~~~~~~~~~~l~d~~~~~~~e~~~Lsid 623 (895)
T KOG2076|consen 544 EFINTASTLVDDFLKKRYIFPRNKKKRRRAIAGTTSKRYSELLKQIIRAREKATDDNVMEKALSDGTEFRAVELRGLSID 623 (895)
T ss_pred HHHHHHHHHHHHHHHHHHhcchHHHHHHHhhccccccccchhHHHHHHHHhccCchHHhhhcccchhhhhhhhhccCcHH
Confidence 7666555554321 1111 111112222222222211111110 01111222211
Q ss_pred h--hHHhHHHHHHHhcCCHHHHHHHHHhcCCCCe---------eechHHHHHHHhcCChHHHHHHHHHHHHC-CC--CCC
Q 003584 472 L--SVDNSLVLVYAKCGCINDANRVFDSMHTRDV---------ITWTALIMGCAQNGKGKEALQFYDQMLAR-GT--KPD 537 (809)
Q Consensus 472 ~--~~~~~li~~y~k~g~~~~A~~~~~~~~~~~~---------~~~~~li~~~~~~g~~~~A~~l~~~m~~~-g~--~pd 537 (809)
. ..+.-++..+++.|++++|..+...+..-++ ..-..++.+....+++.+|...++.|... +. .|.
T Consensus 624 dwfel~~e~i~~L~k~~r~qeAl~vv~~a~~~~~f~~~~~~~k~l~~~~l~~s~~~~d~~~a~~~lR~~i~~~~~~~~~~ 703 (895)
T KOG2076|consen 624 DWFELFRELILSLAKLQRVQEALSVVFTALEAYIFFQDSEIRKELQFLGLKASLYARDPGDAFSYLRSVITQFQFYLDVY 703 (895)
T ss_pred HHHHHHHHHHHHHHHHHhHHHHHHHHHHHHhhhhhhccHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHhhhhhhH
Confidence 1 2445577888899999999998887763221 12234566677889999999999988864 11 233
Q ss_pred HH-HHHHHHHHHHccCCHHHHHHHHHHhHHhhCCCCCh--HHHHHHHHHHhhcCCHHHHHHHHHhCcC-CCCHHHHHHHH
Q 003584 538 YI-TFVGLLFACSHAGLAENARWYFESMDKVYGIKPGP--DHYACMIDLLGRSGKLIEAKALLDQMVG-EPDATVWKALL 613 (809)
Q Consensus 538 ~~-t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~~--~~~~~li~~~~~~g~~~eA~~~~~~m~~-~p~~~~~~~ll 613 (809)
.. .|+..++.....|+-.--..++.... ...|+. ..+..-...+..++.+.-|+..+-+.-. -||.+..+.++
T Consensus 704 q~~l~n~~~s~~~~~~q~v~~~R~~~~~~---~~~~~~~~~l~~i~gh~~~~~~s~~~Al~~y~ra~~~~pd~Pl~nl~l 780 (895)
T KOG2076|consen 704 QLNLWNLDFSYFSKYGQRVCYLRLIMRLL---VKNKDDTPPLALIYGHNLFVNASFKHALQEYMRAFRQNPDSPLINLCL 780 (895)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHh---ccCccCCcceeeeechhHhhccchHHHHHHHHHHHHhCCCCcHHHHHH
Confidence 32 33334444444443222222222221 222222 1122223345567888888876544332 35655444443
Q ss_pred HHH-----------HhcCChhHHHHHHHHHhccCCC--CCccHHhHhhhhhhcCChhHHHHHHHHHHhCC
Q 003584 614 SAC-----------RVHGDLELGERAANNLFELEPM--NAMPYVQLSNMYSTAGKWEDAARVRKLMKSRG 670 (809)
Q Consensus 614 ~a~-----------~~~g~~~~A~~~~~~~~~~~p~--~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~ 670 (809)
..- .+|-.+-.+...+.+..++.-. .-.++..++.+|-..|-..-|..++++..+-.
T Consensus 781 glafih~a~qr~v~~Rh~~i~qG~afL~RY~~lR~~~~~QEa~YNigRayh~~gl~~LA~~YYekvL~~~ 850 (895)
T KOG2076|consen 781 GLAFIHLALQRRVSNRHAQIAQGFAFLKRYKELRRCEEKQEAFYNIGRAYHQIGLVHLAVSYYEKVLEVS 850 (895)
T ss_pred HHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHhhccHHHHHHHHHHHHHHHHcccHHHHHHHHHHHhCCC
Confidence 321 1222355566666666665433 56789999999999999999999999988653
No 34
>KOG4318 consensus Bicoid mRNA stability factor [RNA processing and modification]
Probab=99.60 E-value=6.7e-12 Score=134.94 Aligned_cols=533 Identities=12% Similarity=0.057 Sum_probs=306.0
Q ss_pred HHHHHHHHcCCCCCcccHHHHHHHhhcCCCchHHHHHHHHHHHhCCCCchHHHHHHHHhhhcCCChhHHHHHhhhCCCCC
Q 003584 119 ELFWQMQLEGYRPSQYTLDNVLRLCSLKGLLQRGEQFHGYAIKTCFDLNAFVVTGLVDMYAKCKCIFEAEYLFKMFPDGK 198 (809)
Q Consensus 119 ~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~y~~~g~~~~A~~~f~~~~~~~ 198 (809)
.++-.|...|+.||.+||.+++..|+..|+++.|- ++..|.-..++.+..+++.++......++.+.|. + |
T Consensus 11 nfla~~e~~gi~PnRvtyqsLiarYc~~gdieaat-if~fm~~ksLpv~e~vf~~lv~sh~~And~Enpk-------e-p 81 (1088)
T KOG4318|consen 11 NFLALHEISGILPNRVTYQSLIARYCTKGDIEAAT-IFPFMEIKSLPVREGVFRGLVASHKEANDAENPK-------E-P 81 (1088)
T ss_pred hHHHHHHHhcCCCchhhHHHHHHHHcccCCCcccc-chhhhhcccccccchhHHHHHhcccccccccCCC-------C-C
Confidence 45667788888898888988888888888888888 8888888888888888888888888888877765 3 6
Q ss_pred CcccHHHHHHHHhhCCChHHHHHHHHH-HH-------HCCCCCCcchHHHHHHHHhccC-C------hHHHHHHHHHHHH
Q 003584 199 NHVAWTTMITGYSQNGYGFKAIECFRD-MR-------VEGVESNQFTFPSILTACAAVS-A------RDFGAQVHGCILS 263 (809)
Q Consensus 199 ~~~~~~~li~~~~~~g~~~~A~~l~~~-m~-------~~g~~p~~~t~~~ll~~~~~~~-~------~~~a~~~~~~~~~ 263 (809)
...+|+.|..+|.+.|+... ++..++ |. ..|+..-..-|...+.+|...- + ..--+.+++..++
T Consensus 82 ~aDtyt~Ll~ayr~hGDli~-fe~veqdLe~i~~sfs~~Gvgs~e~~fl~k~~c~p~~lpda~n~illlv~eglwaqllk 160 (1088)
T KOG4318|consen 82 LADTYTNLLKAYRIHGDLIL-FEVVEQDLESINQSFSDHGVGSPERWFLMKIHCCPHSLPDAENAILLLVLEGLWAQLLK 160 (1088)
T ss_pred chhHHHHHHHHHHhccchHH-HHHHHHHHHHHHhhhhhhccCcHHHHHHhhcccCcccchhHHHHHHHHHHHHHHHHHHH
Confidence 77789999999999888655 333333 22 1233222222322223222110 1 0111123333333
Q ss_pred hCCCCchhHHH--H--HHHHHHh-CCChHHHHHHHhccC-CCCeeeHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCcc
Q 003584 264 SGFEANVYVQS--A--LIDMYAK-CGDLDSARRLLEYSE-IDNEVSWNSMIVGFARQGFHKEALSLFKKMHARDIKIDDF 337 (809)
Q Consensus 264 ~g~~~~~~~~~--~--Li~~y~~-~g~~~~A~~~f~~~~-~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~ 337 (809)
.+....+..++ . .++-... ...+++-..+..... .++..++.+++..-..+|+.+.|..++.+|.+.|+..+..
T Consensus 161 ll~~~Pvsa~~~p~~vfLrqnv~~ntpvekLl~~cksl~e~~~s~~l~a~l~~alaag~~d~Ak~ll~emke~gfpir~H 240 (1088)
T KOG4318|consen 161 LLAKVPVSAWNAPFQVFLRQNVVDNTPVEKLLNMCKSLVEAPTSETLHAVLKRALAAGDVDGAKNLLYEMKEKGFPIRAH 240 (1088)
T ss_pred HHhhCCcccccchHHHHHHHhccCCchHHHHHHHHHHhhcCCChHHHHHHHHHHHhcCchhhHHHHHHHHHHcCCCcccc
Confidence 33111111111 1 1111111 122333333333333 4788899999999999999999999999999999999998
Q ss_pred cHHHHHHHhhcCCChHHHHHHHHHHHHhccCCchHHHHHHHHHHHhcCCHHHHHHHHhhcCCCCHhHHHHHHHHHHhcCC
Q 003584 338 TYPSVLNCFASNIDLNNAKSVHSLIVKTGFEGYKFVNNALIDMYAKQGNLDCAFMVFNLMQDKDVISWTSLITGCAYHGS 417 (809)
Q Consensus 338 t~~~ll~~~~~~~~~~~a~~i~~~~~~~g~~~~~~~~~~li~~y~~~g~~~~A~~~f~~~~~~~~~~~~~li~~~~~~g~ 417 (809)
-|..++-+ .++....+.+..-|...|+.|+..++...+-...++|....+.+..+.-..-....+..+..+...+.+
T Consensus 241 yFwpLl~g---~~~~q~~e~vlrgmqe~gv~p~seT~adyvip~l~N~~t~~~~e~sq~~hg~tAavrsaa~rg~~a~k~ 317 (1088)
T KOG4318|consen 241 YFWPLLLG---INAAQVFEFVLRGMQEKGVQPGSETQADYVIPQLSNGQTKYGEEGSQLAHGFTAAVRSAACRGLLANKR 317 (1088)
T ss_pred cchhhhhc---CccchHHHHHHHHHHHhcCCCCcchhHHHHHhhhcchhhhhcccccchhhhhhHHHHHHHhcccHhHHH
Confidence 88888766 788888899999999999999999998888777776663333222111111112233333333111111
Q ss_pred HH-----HHHHHHHHHhhcCCccCHhHHHHHHHHHhcccchhHHHHHHHHHHHhCCCCChhHHhHHHHHHHhcCCHHHHH
Q 003584 418 YE-----EALKYFSDMRISGICPDHVVVSSILSACAELTVLEFGQQVHAVFLKSGGCSSLSVDNSLVLVYAKCGCINDAN 492 (809)
Q Consensus 418 ~~-----~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~y~k~g~~~~A~ 492 (809)
.+ -....+.+..-.|+.-....|..... ....|.-+..+++...+..-- ...-+.-+++|. +.+.
T Consensus 318 l~~nl~~~v~~s~k~~fLlg~d~~~aiws~c~~-l~hQgk~e~veqlvg~l~npt----~r~s~~~V~a~~-----~~lr 387 (1088)
T KOG4318|consen 318 LRQNLRKSVIGSTKKLFLLGTDILEAIWSMCEK-LRHQGKGEEVEQLVGQLLNPT----LRDSGQNVDAFG-----ALLR 387 (1088)
T ss_pred HHHHHHHHHHHHhhHHHHhccccchHHHHHHHH-HHHcCCCchHHHHHhhhcCCc----cccCcchHHHHH-----HHHH
Confidence 11 12222222222333333333322222 222455566666655543211 111111122221 2233
Q ss_pred HHHHhcCCCCeeechHHHHHHHh---cCChHHHHHHHHHH------------HHC----CCCC-------CHHHHHHHHH
Q 003584 493 RVFDSMHTRDVITWTALIMGCAQ---NGKGKEALQFYDQM------------LAR----GTKP-------DYITFVGLLF 546 (809)
Q Consensus 493 ~~~~~~~~~~~~~~~~li~~~~~---~g~~~~A~~l~~~m------------~~~----g~~p-------d~~t~~~ll~ 546 (809)
+.|.+...+....-.-.-.+... .....+..++.... ... -+.| -...-+.++.
T Consensus 388 qyFrr~e~~~~~~i~~~~qgls~~l~se~tp~vsell~~lrkns~lr~lv~Lss~Eler~he~~~~~~h~irdi~~ql~l 467 (1088)
T KOG4318|consen 388 QYFRRIERHICSRIYYAGQGLSLNLNSEDTPRVSELLENLRKNSFLRQLVGLSSTELERSHEPWPLIAHLIRDIANQLHL 467 (1088)
T ss_pred HHHHHHHhhHHHHHHHHHHHHHhhhchhhhHHHHHHHHHhCcchHHHHHhhhhHHHHhcccccchhhhhHHHHHHHHHHH
Confidence 44444433222111111111111 11111111111111 100 0111 0112344555
Q ss_pred HHHccCCHHHHHHHHHHhHHhhCCCCChHHHHHHHHHHhhcCCHHHHHHHHHhCcCC-----CCHHHHHHHHHHHHhcCC
Q 003584 547 ACSHAGLAENARWYFESMDKVYGIKPGPDHYACMIDLLGRSGKLIEAKALLDQMVGE-----PDATVWKALLSACRVHGD 621 (809)
Q Consensus 547 a~~~~g~~~~a~~~~~~m~~~~~~~p~~~~~~~li~~~~~~g~~~eA~~~~~~m~~~-----p~~~~~~~ll~a~~~~g~ 621 (809)
.|...-+..++...-+..... -+ | ..|..||+.+.+..++++|..+.++...+ -|..-+..+.....+++.
T Consensus 468 ~l~se~n~lK~l~~~ekye~~-lf-~--g~ya~Li~l~~~hdkle~Al~~~~e~d~~d~s~~Ld~~~m~~l~dLL~r~~~ 543 (1088)
T KOG4318|consen 468 TLNSEYNKLKILCDEEKYEDL-LF-A--GLYALLIKLMDLHDKLEYALSFVDEIDTRDESIHLDLPLMTSLQDLLQRLAI 543 (1088)
T ss_pred HHHHHHHHHHHHHHHHHHHHH-Hh-h--hHHHHHhhhHHHHHHHHHHHhchhhhcccchhhhcccHhHHHHHHHHHHhHH
Confidence 566655556665444333221 22 2 67999999999999999999999988732 344567788888999999
Q ss_pred hhHHHHHHHHHhc---cCCCCCccHHhHhhhhhhcCChhHHHHHHHHHHhCCCccCCceeE
Q 003584 622 LELGERAANNLFE---LEPMNAMPYVQLSNMYSTAGKWEDAARVRKLMKSRGIRKEPGCSW 679 (809)
Q Consensus 622 ~~~A~~~~~~~~~---~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~s~ 679 (809)
...+..+.+.+.+ ..|.-......+.+.-+..|+.+...++.+-....|+.- .|--|
T Consensus 544 l~dl~tiL~e~ks~a~n~~~~a~~~f~~lns~a~agqqe~Lkkl~d~lvslgl~e-tgPl~ 603 (1088)
T KOG4318|consen 544 LYDLSTILYEDKSSAENEPLVAIILFPLLNSGAPAGQQEKLKKLADILVSLGLSE-TGPLW 603 (1088)
T ss_pred HHHHHHHHhhhhHHhhCCchHHHHHHHHHhhhhhccCHHHHHHHHHHHHHhhhhh-cccce
Confidence 9999888887755 345455667778888899999999999999999888865 34445
No 35
>KOG2003 consensus TPR repeat-containing protein [General function prediction only]
Probab=99.60 E-value=1.6e-12 Score=129.18 Aligned_cols=204 Identities=11% Similarity=0.067 Sum_probs=156.5
Q ss_pred ccchhHHHHHHHHHHHhCCCCChhHHhHHHHHHHhcCCHHHHHHHHHhcC---CCCeeechHHHHHHHhcCChHHHHHHH
Q 003584 450 LTVLEFGQQVHAVFLKSGGCSSLSVDNSLVLVYAKCGCINDANRVFDSMH---TRDVITWTALIMGCAQNGKGKEALQFY 526 (809)
Q Consensus 450 ~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~y~k~g~~~~A~~~~~~~~---~~~~~~~~~li~~~~~~g~~~~A~~l~ 526 (809)
.|++++|...+.+++...-.-....|| +.-.+-+.|++++|++.|-++. ..++...-.+.+.|-...++.+|++++
T Consensus 503 ngd~dka~~~ykeal~ndasc~ealfn-iglt~e~~~~ldeald~f~klh~il~nn~evl~qianiye~led~aqaie~~ 581 (840)
T KOG2003|consen 503 NGDLDKAAEFYKEALNNDASCTEALFN-IGLTAEALGNLDEALDCFLKLHAILLNNAEVLVQIANIYELLEDPAQAIELL 581 (840)
T ss_pred cCcHHHHHHHHHHHHcCchHHHHHHHH-hcccHHHhcCHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHhhCHHHHHHHH
Confidence 455555555555554433211122222 2334677899999999987765 456666667788898999999999999
Q ss_pred HHHHHCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHhHHhhCCCCChHHHHHHHHHHhhcCCHHHHHHHHHhCcC-CCC
Q 003584 527 DQMLARGTKPDYITFVGLLFACSHAGLAENARWYFESMDKVYGIKPGPDHYACMIDLLGRSGKLIEAKALLDQMVG-EPD 605 (809)
Q Consensus 527 ~~m~~~g~~pd~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~~~~~~~li~~~~~~g~~~eA~~~~~~m~~-~p~ 605 (809)
.+.... ++.|+..+..|...|-+.|+-.+|.+++-.--. -++.+.++..-|..-|....-+++|+.+|++... +|+
T Consensus 582 ~q~~sl-ip~dp~ilskl~dlydqegdksqafq~~ydsyr--yfp~nie~iewl~ayyidtqf~ekai~y~ekaaliqp~ 658 (840)
T KOG2003|consen 582 MQANSL-IPNDPAILSKLADLYDQEGDKSQAFQCHYDSYR--YFPCNIETIEWLAAYYIDTQFSEKAINYFEKAALIQPN 658 (840)
T ss_pred HHhccc-CCCCHHHHHHHHHHhhcccchhhhhhhhhhccc--ccCcchHHHHHHHHHHHhhHHHHHHHHHHHHHHhcCcc
Confidence 887764 555667888899999999999999998754322 3445778888888889999999999999998754 899
Q ss_pred HHHHHHHHHHH-HhcCChhHHHHHHHHHhccCCCCCccHHhHhhhhhhcCChh
Q 003584 606 ATVWKALLSAC-RVHGDLELGERAANNLFELEPMNAMPYVQLSNMYSTAGKWE 657 (809)
Q Consensus 606 ~~~~~~ll~a~-~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~ 657 (809)
.+-|..++..| ++.|++..|..+|+.....-|.+....-.|..++...|..+
T Consensus 659 ~~kwqlmiasc~rrsgnyqka~d~yk~~hrkfpedldclkflvri~~dlgl~d 711 (840)
T KOG2003|consen 659 QSKWQLMIASCFRRSGNYQKAFDLYKDIHRKFPEDLDCLKFLVRIAGDLGLKD 711 (840)
T ss_pred HHHHHHHHHHHHHhcccHHHHHHHHHHHHHhCccchHHHHHHHHHhccccchh
Confidence 99999998777 67899999999999999999999999999999988887643
No 36
>KOG4318 consensus Bicoid mRNA stability factor [RNA processing and modification]
Probab=99.58 E-value=6.2e-11 Score=127.68 Aligned_cols=616 Identities=12% Similarity=0.077 Sum_probs=336.5
Q ss_pred CCCcchHHHHHHHHhcCCChHHHHHHHHhcCCC----CcchHHHHHHHHHccCChhHHHHHhhhCCCCCcchHHHHHHHH
Q 003584 33 VKPASDLNRALVDFSNSGEIDEAGQLFEKMSDR----DGFTWNTMIAAYANSGRLREAKKLFNETPFKNFFTWSSLIYGY 108 (809)
Q Consensus 33 ~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~----~~~~~~~li~~~~~~g~~~~A~~~f~~~~~~~~~~~~~li~~~ 108 (809)
.|...+|.+++..|+..|+.+.|- +|..|.-. +..+++.++.+...+|+.+.+. +|...+|+.|..+|
T Consensus 22 ~PnRvtyqsLiarYc~~gdieaat-if~fm~~ksLpv~e~vf~~lv~sh~~And~Enpk-------ep~aDtyt~Ll~ay 93 (1088)
T KOG4318|consen 22 LPNRVTYQSLIARYCTKGDIEAAT-IFPFMEIKSLPVREGVFRGLVASHKEANDAENPK-------EPLADTYTNLLKAY 93 (1088)
T ss_pred CCchhhHHHHHHHHcccCCCcccc-chhhhhcccccccchhHHHHHhcccccccccCCC-------CCchhHHHHHHHHH
Confidence 344568888888899999988888 77766543 4567888888888888877665 67788999999999
Q ss_pred HcCCCchhHHHHHHH-H---H----HcCCCCCcccHHHHHHHhhcCCCchHH---------HHHHHHHHHhCCCCchHHH
Q 003584 109 SNYGLDIEAFELFWQ-M---Q----LEGYRPSQYTLDNVLRLCSLKGLLQRG---------EQFHGYAIKTCFDLNAFVV 171 (809)
Q Consensus 109 ~~~g~~~~A~~~~~~-m---~----~~g~~p~~~t~~~ll~~~~~~~~~~~a---------~~~~~~~~~~g~~~~~~~~ 171 (809)
.+.|+... ++..++ | . ..|+.--..-|...+++|. +.+..+ +.+++..++.+....+..+
T Consensus 94 r~hGDli~-fe~veqdLe~i~~sfs~~Gvgs~e~~fl~k~~c~p--~~lpda~n~illlv~eglwaqllkll~~~Pvsa~ 170 (1088)
T KOG4318|consen 94 RIHGDLIL-FEVVEQDLESINQSFSDHGVGSPERWFLMKIHCCP--HSLPDAENAILLLVLEGLWAQLLKLLAKVPVSAW 170 (1088)
T ss_pred HhccchHH-HHHHHHHHHHHHhhhhhhccCcHHHHHHhhcccCc--ccchhHHHHHHHHHHHHHHHHHHHHHhhCCcccc
Confidence 99998765 333232 2 1 1232222222222222221 111111 2233444444411111111
Q ss_pred HHHHHhhhcCC--ChhHHHHHh---hhCCCCCCcccHHHHHHHHhhCCChHHHHHHHHHHHHCCCCCCcchHHHHHHHHh
Q 003584 172 TGLVDMYAKCK--CIFEAEYLF---KMFPDGKNHVAWTTMITGYSQNGYGFKAIECFRDMRVEGVESNQFTFPSILTACA 246 (809)
Q Consensus 172 ~~li~~y~~~g--~~~~A~~~f---~~~~~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~~~~ 246 (809)
+.-...+.+.. .....+++. ....+.++..++.+++..-.-+|+.+.|..++.+|.+.|++.+..-|..+|-+
T Consensus 171 ~~p~~vfLrqnv~~ntpvekLl~~cksl~e~~~s~~l~a~l~~alaag~~d~Ak~ll~emke~gfpir~HyFwpLl~g-- 248 (1088)
T KOG4318|consen 171 NAPFQVFLRQNVVDNTPVEKLLNMCKSLVEAPTSETLHAVLKRALAAGDVDGAKNLLYEMKEKGFPIRAHYFWPLLLG-- 248 (1088)
T ss_pred cchHHHHHHHhccCCchHHHHHHHHHHhhcCCChHHHHHHHHHHHhcCchhhHHHHHHHHHHcCCCcccccchhhhhc--
Confidence 11111111111 112222222 22222378889999999999999999999999999999999998888887766
Q ss_pred ccCChHHHHHHHHHHHHhCCCCchhHHHHHHHHHHhCCChHHHHHHHhccCCCCeeeHHHHHHHHHhcCCh-----hHHH
Q 003584 247 AVSARDFGAQVHGCILSSGFEANVYVQSALIDMYAKCGDLDSARRLLEYSEIDNEVSWNSMIVGFARQGFH-----KEAL 321 (809)
Q Consensus 247 ~~~~~~~a~~~~~~~~~~g~~~~~~~~~~Li~~y~~~g~~~~A~~~f~~~~~~~~~~~~~li~~~~~~g~~-----~~A~ 321 (809)
.++...+..+..-|.+.|+.|+..|+.--+-...++|....+....+.-.--....+..+..+...+.+. .-..
T Consensus 249 -~~~~q~~e~vlrgmqe~gv~p~seT~adyvip~l~N~~t~~~~e~sq~~hg~tAavrsaa~rg~~a~k~l~~nl~~~v~ 327 (1088)
T KOG4318|consen 249 -INAAQVFEFVLRGMQEKGVQPGSETQADYVIPQLSNGQTKYGEEGSQLAHGFTAAVRSAACRGLLANKRLRQNLRKSVI 327 (1088)
T ss_pred -CccchHHHHHHHHHHHhcCCCCcchhHHHHHhhhcchhhhhcccccchhhhhhHHHHHHHhcccHhHHHHHHHHHHHHH
Confidence 7888888899999999999999999988777777655533332221100000111122222221111111 1112
Q ss_pred HHHHHHHHCCCCCCcccHHHHHHHhhcCCChHHHHHHHHHHHHhcc---CCchHHHHHHHHHHHhcC-------------
Q 003584 322 SLFKKMHARDIKIDDFTYPSVLNCFASNIDLNNAKSVHSLIVKTGF---EGYKFVNNALIDMYAKQG------------- 385 (809)
Q Consensus 322 ~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~i~~~~~~~g~---~~~~~~~~~li~~y~~~g------------- 385 (809)
..+.+..-.|+......|.. ..-....|.-+..+++-..+..--. ..++..+..++.-|.+.-
T Consensus 328 ~s~k~~fLlg~d~~~aiws~-c~~l~hQgk~e~veqlvg~l~npt~r~s~~~V~a~~~~lrqyFrr~e~~~~~~i~~~~q 406 (1088)
T KOG4318|consen 328 GSTKKLFLLGTDILEAIWSM-CEKLRHQGKGEEVEQLVGQLLNPTLRDSGQNVDAFGALLRQYFRRIERHICSRIYYAGQ 406 (1088)
T ss_pred HHhhHHHHhccccchHHHHH-HHHHHHcCCCchHHHHHhhhcCCccccCcchHHHHHHHHHHHHHHHHhhHHHHHHHHHH
Confidence 22222222233222222221 1122224555555555555433211 112223333333333221
Q ss_pred ---------CHHHHHHHHhhcCCCCHh-----------------HH-----------HHHHHHHHhcCCHHHHHHHHHHH
Q 003584 386 ---------NLDCAFMVFNLMQDKDVI-----------------SW-----------TSLITGCAYHGSYEEALKYFSDM 428 (809)
Q Consensus 386 ---------~~~~A~~~f~~~~~~~~~-----------------~~-----------~~li~~~~~~g~~~~A~~~~~~m 428 (809)
......++.... .||.. .| +.++..++..-+..+++..-+..
T Consensus 407 gls~~l~se~tp~vsell~~l-rkns~lr~lv~Lss~Eler~he~~~~~~h~irdi~~ql~l~l~se~n~lK~l~~~eky 485 (1088)
T KOG4318|consen 407 GLSLNLNSEDTPRVSELLENL-RKNSFLRQLVGLSSTELERSHEPWPLIAHLIRDIANQLHLTLNSEYNKLKILCDEEKY 485 (1088)
T ss_pred HHHhhhchhhhHHHHHHHHHh-CcchHHHHHhhhhHHHHhcccccchhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 111111111111 12110 11 12222333333333333222222
Q ss_pred hhcCCccCHhHHHHHHHHHhcccchhHHHHHHHHHHH--hCCCCChhHHhHHHHHHHhcCCHHHHHHHHHhcCCC-----
Q 003584 429 RISGICPDHVVVSSILSACAELTVLEFGQQVHAVFLK--SGGCSSLSVDNSLVLVYAKCGCINDANRVFDSMHTR----- 501 (809)
Q Consensus 429 ~~~g~~p~~~t~~~ll~a~~~~~~~~~a~~~~~~~~~--~g~~~~~~~~~~li~~y~k~g~~~~A~~~~~~~~~~----- 501 (809)
... .-| -.|..++.-|.....++.|..+.+++.. ..+..|..-+..+.+...+.+...++..++.++.+.
T Consensus 486 e~~-lf~--g~ya~Li~l~~~hdkle~Al~~~~e~d~~d~s~~Ld~~~m~~l~dLL~r~~~l~dl~tiL~e~ks~a~n~~ 562 (1088)
T KOG4318|consen 486 EDL-LFA--GLYALLIKLMDLHDKLEYALSFVDEIDTRDESIHLDLPLMTSLQDLLQRLAILYDLSTILYEDKSSAENEP 562 (1088)
T ss_pred HHH-Hhh--hHHHHHhhhHHHHHHHHHHHhchhhhcccchhhhcccHhHHHHHHHHHHhHHHHHHHHHHhhhhHHhhCCc
Confidence 111 111 4467777778888888888888777654 234456777788889999999999999998888742
Q ss_pred C-eeechHHHHHHHhcCChHHHHHHHHHHHHCCCCCCH------------HH------------------HHHHHH----
Q 003584 502 D-VITWTALIMGCAQNGKGKEALQFYDQMLARGTKPDY------------IT------------------FVGLLF---- 546 (809)
Q Consensus 502 ~-~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~pd~------------~t------------------~~~ll~---- 546 (809)
+ ..+.--++++.+..|+.+.-.++++-+...|+.-.. .+ ...+.+
T Consensus 563 ~~a~~~f~~lns~a~agqqe~Lkkl~d~lvslgl~etgPl~~vhLrkdd~s~a~ea~e~~~qkyk~~P~~~e~lcrlv~k 642 (1088)
T KOG4318|consen 563 LVAIILFPLLNSGAPAGQQEKLKKLADILVSLGLSETGPLWMVHLRKDDQSAAQEAPEPEEQKYKPYPKDLEGLCRLVYK 642 (1088)
T ss_pred hHHHHHHHHHhhhhhccCHHHHHHHHHHHHHhhhhhcccceEEEeeccchhhhhhcchHHHHHhcCChHHHHHHHHHHHh
Confidence 1 123344566777888888888888888877653210 00 011111
Q ss_pred -----------------HHHccCCHHHHHHHHHHhHHhhCC---------------CC---------ChHHHHHHHHHHh
Q 003584 547 -----------------ACSHAGLAENARWYFESMDKVYGI---------------KP---------GPDHYACMIDLLG 585 (809)
Q Consensus 547 -----------------a~~~~g~~~~a~~~~~~m~~~~~~---------------~p---------~~~~~~~li~~~~ 585 (809)
.|.+.|++.+|.++.+ ..|+ .| +.....-|+..|.
T Consensus 643 e~td~~qk~mDls~~iq~f~k~g~~~~a~di~e----tpG~r~r~~RDr~~de~e~~~lEll~elt~~lg~~dRLL~sy~ 718 (1088)
T KOG4318|consen 643 ETTDSPQKTMDLSIPIQKFEKLGSCVDAGDITE----TPGVRCRNGRDRDTDEGEIVPLELLLELTHELGKNDRLLQSYL 718 (1088)
T ss_pred hccccHHHHHhhcchhHHHHhcccccchhhccc----cCcccccCCCccccccCccccHHHHHHHHhHhHHHHHHHHHHH
Confidence 1222222222222221 0011 01 1122334677889
Q ss_pred hcCCHHHHHHHHHhCcCCCCHHHHHHHHHHHHhcC---ChhHHHHHHHHHhccCCCCCcc---HHhHhhhhhhcCChhHH
Q 003584 586 RSGKLIEAKALLDQMVGEPDATVWKALLSACRVHG---DLELGERAANNLFELEPMNAMP---YVQLSNMYSTAGKWEDA 659 (809)
Q Consensus 586 ~~g~~~eA~~~~~~m~~~p~~~~~~~ll~a~~~~g---~~~~A~~~~~~~~~~~p~~~~~---~~~l~~~~~~~g~~~~A 659 (809)
+.|+++.|..++.+++..|+..+...|+..++.+. ++.++...-+++.++.|..+.+ |.-.+....+....+.|
T Consensus 719 ~~g~~erA~glwnK~QV~k~~~~l~~LAsIlr~~n~evdvPe~q~e~ekas~~~~~f~ttt~~~~~~a~~a~q~~qkkaA 798 (1088)
T KOG4318|consen 719 EEGRIERASGLWNKDQVSKSPMKLFHLASILRRMNEEVDVPEIQAETEKASELRTLFPTTTCYYEGYAFFATQTEQKKAA 798 (1088)
T ss_pred hhhHHHHHHhHHhhCcCCcchHHHHHHHHHHHhhchhccchhHHHHHHHHHhcccccccchHhhhhhHHHHhhHHHHHHH
Confidence 99999999999999987788888888888887765 4555555666666666544433 33333344444455578
Q ss_pred HHHHHHHHhCCC
Q 003584 660 ARVRKLMKSRGI 671 (809)
Q Consensus 660 ~~~~~~m~~~~~ 671 (809)
.+.+.+..+...
T Consensus 799 kk~f~r~eeq~~ 810 (1088)
T KOG4318|consen 799 KKCFERLEEQLT 810 (1088)
T ss_pred HHHHHHHHHccC
Confidence 899999888744
No 37
>PF13429 TPR_15: Tetratricopeptide repeat; PDB: 2VQ2_A 2PL2_B.
Probab=99.49 E-value=8.6e-14 Score=142.86 Aligned_cols=213 Identities=17% Similarity=0.180 Sum_probs=113.8
Q ss_pred ccchhHHHHHHHHHHHhCCCCChhHHhHHHHHHHhcCCHHHHHHHHHhcC--CCCeeechHHHHHHHhcCChHHHHHHHH
Q 003584 450 LTVLEFGQQVHAVFLKSGGCSSLSVDNSLVLVYAKCGCINDANRVFDSMH--TRDVITWTALIMGCAQNGKGKEALQFYD 527 (809)
Q Consensus 450 ~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~y~k~g~~~~A~~~~~~~~--~~~~~~~~~li~~~~~~g~~~~A~~l~~ 527 (809)
.++.+.|.+.+..+...+. .+...+..++.. ...+++++|.+++...- .++...|..++..+...|+++++..+++
T Consensus 57 ~~~~~~A~~ay~~l~~~~~-~~~~~~~~l~~l-~~~~~~~~A~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~l~ 134 (280)
T PF13429_consen 57 LGDYDEAIEAYEKLLASDK-ANPQDYERLIQL-LQDGDPEEALKLAEKAYERDGDPRYLLSALQLYYRLGDYDEAEELLE 134 (280)
T ss_dssp ---------------------------------------------------------------H-HHHTT-HHHHHHHHH
T ss_pred ccccccccccccccccccc-cccccccccccc-cccccccccccccccccccccccchhhHHHHHHHHHhHHHHHHHHHH
Confidence 3444444444444443331 234445555555 57788888888887664 4566778888888999999999999999
Q ss_pred HHHHCC-CCCCHHHHHHHHHHHHccCCHHHHHHHHHHhHHhhCCCCC-hHHHHHHHHHHhhcCCHHHHHHHHHhCcC--C
Q 003584 528 QMLARG-TKPDYITFVGLLFACSHAGLAENARWYFESMDKVYGIKPG-PDHYACMIDLLGRSGKLIEAKALLDQMVG--E 603 (809)
Q Consensus 528 ~m~~~g-~~pd~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~-~~~~~~li~~~~~~g~~~eA~~~~~~m~~--~ 603 (809)
++.... .+++...|..+...+.+.|+.++|...++...+. .|+ ......++.++...|+.+++.++++.... +
T Consensus 135 ~~~~~~~~~~~~~~~~~~a~~~~~~G~~~~A~~~~~~al~~---~P~~~~~~~~l~~~li~~~~~~~~~~~l~~~~~~~~ 211 (280)
T PF13429_consen 135 KLEELPAAPDSARFWLALAEIYEQLGDPDKALRDYRKALEL---DPDDPDARNALAWLLIDMGDYDEAREALKRLLKAAP 211 (280)
T ss_dssp HHHH-T---T-HHHHHHHHHHHHHCCHHHHHHHHHHHHHHH----TT-HHHHHHHHHHHCTTCHHHHHHHHHHHHHHH-H
T ss_pred HHHhccCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHc---CCCCHHHHHHHHHHHHHCCChHHHHHHHHHHHHHCc
Confidence 987643 3456667888888899999999999999988753 564 67788899999999999998888776653 3
Q ss_pred CCHHHHHHHHHHHHhcCChhHHHHHHHHHhccCCCCCccHHhHhhhhhhcCChhHHHHHHHHHH
Q 003584 604 PDATVWKALLSACRVHGDLELGERAANNLFELEPMNAMPYVQLSNMYSTAGKWEDAARVRKLMK 667 (809)
Q Consensus 604 p~~~~~~~ll~a~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~ 667 (809)
.|+..|..+..++...|+.++|...++++.+..|+|+.....+++++...|+.++|.+++++..
T Consensus 212 ~~~~~~~~la~~~~~lg~~~~Al~~~~~~~~~~p~d~~~~~~~a~~l~~~g~~~~A~~~~~~~~ 275 (280)
T PF13429_consen 212 DDPDLWDALAAAYLQLGRYEEALEYLEKALKLNPDDPLWLLAYADALEQAGRKDEALRLRRQAL 275 (280)
T ss_dssp TSCCHCHHHHHHHHHHT-HHHHHHHHHHHHHHSTT-HHHHHHHHHHHT----------------
T ss_pred CHHHHHHHHHHHhccccccccccccccccccccccccccccccccccccccccccccccccccc
Confidence 5667899999999999999999999999999999999999999999999999999999988754
No 38
>KOG0547 consensus Translocase of outer mitochondrial membrane complex, subunit TOM70/TOM72 [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.49 E-value=1.4e-10 Score=117.11 Aligned_cols=212 Identities=17% Similarity=0.136 Sum_probs=167.4
Q ss_pred ccchhHHHHHHHHHHHhCCCCChhHHhHHHHHHHhcCCHHHHHHHHHhcC---CCCeeechHHHHHHHhcCChHHHHHHH
Q 003584 450 LTVLEFGQQVHAVFLKSGGCSSLSVDNSLVLVYAKCGCINDANRVFDSMH---TRDVITWTALIMGCAQNGKGKEALQFY 526 (809)
Q Consensus 450 ~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~y~k~g~~~~A~~~~~~~~---~~~~~~~~~li~~~~~~g~~~~A~~l~ 526 (809)
.|+.-.+.+-++.+++....++. .|--+..+|....+.++-...|++.. +.|..+|..-...+.-.+++++|..=|
T Consensus 339 ~g~~~~a~~d~~~~I~l~~~~~~-lyI~~a~~y~d~~~~~~~~~~F~~A~~ldp~n~dvYyHRgQm~flL~q~e~A~aDF 417 (606)
T KOG0547|consen 339 KGDSLGAQEDFDAAIKLDPAFNS-LYIKRAAAYADENQSEKMWKDFNKAEDLDPENPDVYYHRGQMRFLLQQYEEAIADF 417 (606)
T ss_pred cCCchhhhhhHHHHHhcCcccch-HHHHHHHHHhhhhccHHHHHHHHHHHhcCCCCCchhHhHHHHHHHHHHHHHHHHHH
Confidence 46666777777777766533322 25555667888888888888998776 345667777777778888999999999
Q ss_pred HHHHHCCCCCCH-HHHHHHHHHHHccCCHHHHHHHHHHhHHhhCCCCChHHHHHHHHHHhhcCCHHHHHHHHHhCcC-CC
Q 003584 527 DQMLARGTKPDY-ITFVGLLFACSHAGLAENARWYFESMDKVYGIKPGPDHYACMIDLLGRSGKLIEAKALLDQMVG-EP 604 (809)
Q Consensus 527 ~~m~~~g~~pd~-~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~~~~~~~li~~~~~~g~~~eA~~~~~~m~~-~p 604 (809)
++.+. +.|+. ..|..+.-+..+.+.++++...|+..++ .++-.++.|+.....+..+++++.|.+.|+.... +|
T Consensus 418 ~Kai~--L~pe~~~~~iQl~~a~Yr~~k~~~~m~~Fee~kk--kFP~~~Evy~~fAeiLtDqqqFd~A~k~YD~ai~LE~ 493 (606)
T KOG0547|consen 418 QKAIS--LDPENAYAYIQLCCALYRQHKIAESMKTFEEAKK--KFPNCPEVYNLFAEILTDQQQFDKAVKQYDKAIELEP 493 (606)
T ss_pred HHHhh--cChhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHH--hCCCCchHHHHHHHHHhhHHhHHHHHHHHHHHHhhcc
Confidence 99988 56655 4788888888889999999999999987 4556678899999999999999999999998764 34
Q ss_pred C---------HHHHHHHHHHHHhcCChhHHHHHHHHHhccCCCCCccHHhHhhhhhhcCChhHHHHHHHHHH
Q 003584 605 D---------ATVWKALLSACRVHGDLELGERAANNLFELEPMNAMPYVQLSNMYSTAGKWEDAARVRKLMK 667 (809)
Q Consensus 605 ~---------~~~~~~ll~a~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~ 667 (809)
+ +.+-.+++-.-. .+++..|+.+++++++++|....+|..|+.+-.+.|+.++|+++|++..
T Consensus 494 ~~~~~~v~~~plV~Ka~l~~qw-k~d~~~a~~Ll~KA~e~Dpkce~A~~tlaq~~lQ~~~i~eAielFEksa 564 (606)
T KOG0547|consen 494 REHLIIVNAAPLVHKALLVLQW-KEDINQAENLLRKAIELDPKCEQAYETLAQFELQRGKIDEAIELFEKSA 564 (606)
T ss_pred ccccccccchhhhhhhHhhhch-hhhHHHHHHHHHHHHccCchHHHHHHHHHHHHHHHhhHHHHHHHHHHHH
Confidence 3 222333332222 3899999999999999999999999999999999999999999998754
No 39
>PRK10747 putative protoheme IX biogenesis protein; Provisional
Probab=99.42 E-value=1.5e-10 Score=124.52 Aligned_cols=254 Identities=13% Similarity=0.014 Sum_probs=158.6
Q ss_pred hcCCChHHHHHHHHHHHHhccCCchHHH--HHHHHHHHhcCCHHHHHHHHhhcCC---CCHhHHHHHHHHHHhcCCHHHH
Q 003584 347 ASNIDLNNAKSVHSLIVKTGFEGYKFVN--NALIDMYAKQGNLDCAFMVFNLMQD---KDVISWTSLITGCAYHGSYEEA 421 (809)
Q Consensus 347 ~~~~~~~~a~~i~~~~~~~g~~~~~~~~--~~li~~y~~~g~~~~A~~~f~~~~~---~~~~~~~~li~~~~~~g~~~~A 421 (809)
...|+.+.+.+.+..+.+. .|+.... ......+...|+++.|...++.+.+ .++.....+...|.+.|++++|
T Consensus 129 ~~~g~~~~A~~~l~~A~~~--~~~~~~~~~l~~a~l~l~~g~~~~Al~~l~~~~~~~P~~~~al~ll~~~~~~~gdw~~a 206 (398)
T PRK10747 129 QQRGDEARANQHLERAAEL--ADNDQLPVEITRVRIQLARNENHAARHGVDKLLEVAPRHPEVLRLAEQAYIRTGAWSSL 206 (398)
T ss_pred HHCCCHHHHHHHHHHHHhc--CCcchHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHhHHHH
Confidence 4445555555555555432 2332222 2335667778888888888887765 3566777888888888899999
Q ss_pred HHHHHHHhhcCCccCHhHHHHHHHHHhcccchhHHHHHHHHHHHhCCCCChhHHhHHHHHHHhcCCHHHHHHHHHhcC--
Q 003584 422 LKYFSDMRISGICPDHVVVSSILSACAELTVLEFGQQVHAVFLKSGGCSSLSVDNSLVLVYAKCGCINDANRVFDSMH-- 499 (809)
Q Consensus 422 ~~~~~~m~~~g~~p~~~t~~~ll~a~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~y~k~g~~~~A~~~~~~~~-- 499 (809)
.+++..+.+.+..++. .+..+-. ..+..++....+..+.+...++++.++
T Consensus 207 ~~~l~~l~k~~~~~~~-~~~~l~~---------------------------~a~~~l~~~~~~~~~~~~l~~~w~~lp~~ 258 (398)
T PRK10747 207 LDILPSMAKAHVGDEE-HRAMLEQ---------------------------QAWIGLMDQAMADQGSEGLKRWWKNQSRK 258 (398)
T ss_pred HHHHHHHHHcCCCCHH-HHHHHHH---------------------------HHHHHHHHHHHHhcCHHHHHHHHHhCCHH
Confidence 9888888876644322 1111000 001111111222233444555555554
Q ss_pred -CCCeeechHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHhHHhhCCCCChHHHH
Q 003584 500 -TRDVITWTALIMGCAQNGKGKEALQFYDQMLARGTKPDYITFVGLLFACSHAGLAENARWYFESMDKVYGIKPGPDHYA 578 (809)
Q Consensus 500 -~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~pd~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~~~~~~ 578 (809)
+.++.....+..++...|+.++|.+.+++..+. .||... .++.+....++.+++.+..+...+. .+-|...+.
T Consensus 259 ~~~~~~~~~~~A~~l~~~g~~~~A~~~L~~~l~~--~~~~~l--~~l~~~l~~~~~~~al~~~e~~lk~--~P~~~~l~l 332 (398)
T PRK10747 259 TRHQVALQVAMAEHLIECDDHDTAQQIILDGLKR--QYDERL--VLLIPRLKTNNPEQLEKVLRQQIKQ--HGDTPLLWS 332 (398)
T ss_pred HhCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhc--CCCHHH--HHHHhhccCCChHHHHHHHHHHHhh--CCCCHHHHH
Confidence 235556667777777788888888888777763 444421 1233333457778888877777653 233445667
Q ss_pred HHHHHHhhcCCHHHHHHHHHhCcC-CCCHHHHHHHHHHHHhcCChhHHHHHHHHHhccC
Q 003584 579 CMIDLLGRSGKLIEAKALLDQMVG-EPDATVWKALLSACRVHGDLELGERAANNLFELE 636 (809)
Q Consensus 579 ~li~~~~~~g~~~eA~~~~~~m~~-~p~~~~~~~ll~a~~~~g~~~~A~~~~~~~~~~~ 636 (809)
++..++.+.|++++|.+.|++... .|+...+..|...+...|+.++|..++++.+.+-
T Consensus 333 ~lgrl~~~~~~~~~A~~~le~al~~~P~~~~~~~La~~~~~~g~~~~A~~~~~~~l~~~ 391 (398)
T PRK10747 333 TLGQLLMKHGEWQEASLAFRAALKQRPDAYDYAWLADALDRLHKPEEAAAMRRDGLMLT 391 (398)
T ss_pred HHHHHHHHCCCHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhh
Confidence 778888888888888888887765 4888887788888888888888888888877653
No 40
>KOG1126 consensus DNA-binding cell division cycle control protein [Cell cycle control, cell division, chromosome partitioning]
Probab=99.39 E-value=3e-11 Score=127.16 Aligned_cols=276 Identities=15% Similarity=0.052 Sum_probs=217.6
Q ss_pred CHHHHHHHHhhcCC--CCH-hHHHHHHHHHHhcCCHHHHHHHHHHHhhcC--CccCHhHHHHHHHHHhcccchhHHHHHH
Q 003584 386 NLDCAFMVFNLMQD--KDV-ISWTSLITGCAYHGSYEEALKYFSDMRISG--ICPDHVVVSSILSACAELTVLEFGQQVH 460 (809)
Q Consensus 386 ~~~~A~~~f~~~~~--~~~-~~~~~li~~~~~~g~~~~A~~~~~~m~~~g--~~p~~~t~~~ll~a~~~~~~~~~a~~~~ 460 (809)
+..+|...|...++ .|+ .....+..+|...+++++|.++|+...+.. ..-+...|.++|...-+. .+...+
T Consensus 334 ~~~~A~~~~~klp~h~~nt~wvl~q~GrayFEl~~Y~~a~~~F~~~r~~~p~rv~~meiyST~LWHLq~~----v~Ls~L 409 (638)
T KOG1126|consen 334 NCREALNLFEKLPSHHYNTGWVLSQLGRAYFELIEYDQAERIFSLVRRIEPYRVKGMEIYSTTLWHLQDE----VALSYL 409 (638)
T ss_pred HHHHHHHHHHhhHHhcCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccccccchhHHHHHHHHHHhh----HHHHHH
Confidence 46788888888665 233 344556788999999999999999998752 112566788877654322 122222
Q ss_pred HHHHHhCCCCChhHHhHHHHHHHhcCCHHHHHHHHHhcCCC---CeeechHHHHHHHhcCChHHHHHHHHHHHHCCCCCC
Q 003584 461 AVFLKSGGCSSLSVDNSLVLVYAKCGCINDANRVFDSMHTR---DVITWTALIMGCAQNGKGKEALQFYDQMLARGTKPD 537 (809)
Q Consensus 461 ~~~~~~g~~~~~~~~~~li~~y~k~g~~~~A~~~~~~~~~~---~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~pd 537 (809)
..-+-.--+..+.+|.++.++|.-+++.+.|++.|++..+- ...+|+-+..-+.....+|.|...|+..+. +.|+
T Consensus 410 aq~Li~~~~~sPesWca~GNcfSLQkdh~~Aik~f~RAiQldp~faYayTLlGhE~~~~ee~d~a~~~fr~Al~--~~~r 487 (638)
T KOG1126|consen 410 AQDLIDTDPNSPESWCALGNCFSLQKDHDTAIKCFKRAIQLDPRFAYAYTLLGHESIATEEFDKAMKSFRKALG--VDPR 487 (638)
T ss_pred HHHHHhhCCCCcHHHHHhcchhhhhhHHHHHHHHHHHhhccCCccchhhhhcCChhhhhHHHHhHHHHHHhhhc--CCch
Confidence 22222223667899999999999999999999999998854 456777777778889999999999999876 4565
Q ss_pred HH-HHHHHHHHHHccCCHHHHHHHHHHhHHhhCCCCC-hHHHHHHHHHHhhcCCHHHHHHHHHhCcC--CCCHHHHHHHH
Q 003584 538 YI-TFVGLLFACSHAGLAENARWYFESMDKVYGIKPG-PDHYACMIDLLGRSGKLIEAKALLDQMVG--EPDATVWKALL 613 (809)
Q Consensus 538 ~~-t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~-~~~~~~li~~~~~~g~~~eA~~~~~~m~~--~p~~~~~~~ll 613 (809)
.. .|-.+...|.+.++++.|.-.|+.+. .+.|. .....++...+.+.|+.|+|+.+++++.. +.|+..--..+
T Consensus 488 hYnAwYGlG~vy~Kqek~e~Ae~~fqkA~---~INP~nsvi~~~~g~~~~~~k~~d~AL~~~~~A~~ld~kn~l~~~~~~ 564 (638)
T KOG1126|consen 488 HYNAWYGLGTVYLKQEKLEFAEFHFQKAV---EINPSNSVILCHIGRIQHQLKRKDKALQLYEKAIHLDPKNPLCKYHRA 564 (638)
T ss_pred hhHHHHhhhhheeccchhhHHHHHHHhhh---cCCccchhHHhhhhHHHHHhhhhhHHHHHHHHHHhcCCCCchhHHHHH
Confidence 54 77788889999999999999998876 67775 46667788899999999999999998874 34555555566
Q ss_pred HHHHhcCChhHHHHHHHHHhccCCCCCccHHhHhhhhhhcCChhHHHHHHHHHHhCC
Q 003584 614 SACRVHGDLELGERAANNLFELEPMNAMPYVQLSNMYSTAGKWEDAARVRKLMKSRG 670 (809)
Q Consensus 614 ~a~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~ 670 (809)
..+...++.++|+..++++.++-|+++..|..++.+|.+.|+.+.|..-|.-|.+..
T Consensus 565 ~il~~~~~~~eal~~LEeLk~~vP~es~v~~llgki~k~~~~~~~Al~~f~~A~~ld 621 (638)
T KOG1126|consen 565 SILFSLGRYVEALQELEELKELVPQESSVFALLGKIYKRLGNTDLALLHFSWALDLD 621 (638)
T ss_pred HHHHhhcchHHHHHHHHHHHHhCcchHHHHHHHHHHHHHHccchHHHHhhHHHhcCC
Confidence 778888999999999999999999999999999999999999999999888776553
No 41
>KOG1915 consensus Cell cycle control protein (crooked neck) [Cell cycle control, cell division, chromosome partitioning]
Probab=99.39 E-value=1.6e-08 Score=101.97 Aligned_cols=482 Identities=13% Similarity=0.077 Sum_probs=335.2
Q ss_pred cCCChhHHHHHhhhCCC--CCCcccHHHHHHHHhhCCChHHHHHHHHHHHHCCCCCCcchHHHHHHHHhccCChHHHHHH
Q 003584 180 KCKCIFEAEYLFKMFPD--GKNHVAWTTMITGYSQNGYGFKAIECFRDMRVEGVESNQFTFPSILTACAAVSARDFGAQV 257 (809)
Q Consensus 180 ~~g~~~~A~~~f~~~~~--~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~ 257 (809)
..+++..|+.+|++... .++...|--.+..-.++.....|..++++....=.+.|.. |.--+..=-.+|++..|+++
T Consensus 85 sq~e~~RARSv~ERALdvd~r~itLWlkYae~Emknk~vNhARNv~dRAvt~lPRVdql-WyKY~ymEE~LgNi~gaRqi 163 (677)
T KOG1915|consen 85 SQKEIQRARSVFERALDVDYRNITLWLKYAEFEMKNKQVNHARNVWDRAVTILPRVDQL-WYKYIYMEEMLGNIAGARQI 163 (677)
T ss_pred hHHHHHHHHHHHHHHHhcccccchHHHHHHHHHHhhhhHhHHHHHHHHHHHhcchHHHH-HHHHHHHHHHhcccHHHHHH
Confidence 34667778888877544 2566777777888888888888888888876542222322 22233333467888899999
Q ss_pred HHHHHHhCCCCchhHHHHHHHHHHhCCChHHHHHHHhcc--CCCCeeeHHHHHHHHHhcCChhHHHHHHHHHHHC-CC-C
Q 003584 258 HGCILSSGFEANVYVQSALIDMYAKCGDLDSARRLLEYS--EIDNEVSWNSMIVGFARQGFHKEALSLFKKMHAR-DI-K 333 (809)
Q Consensus 258 ~~~~~~~g~~~~~~~~~~Li~~y~~~g~~~~A~~~f~~~--~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~-g~-~ 333 (809)
|+.-.+. .|+...|++.|+.=.+...++.|+.++++. ..|++.+|--....=-++|....|..+|....+. |- .
T Consensus 164 ferW~~w--~P~eqaW~sfI~fElRykeieraR~IYerfV~~HP~v~~wikyarFE~k~g~~~~aR~VyerAie~~~~d~ 241 (677)
T KOG1915|consen 164 FERWMEW--EPDEQAWLSFIKFELRYKEIERARSIYERFVLVHPKVSNWIKYARFEEKHGNVALARSVYERAIEFLGDDE 241 (677)
T ss_pred HHHHHcC--CCcHHHHHHHHHHHHHhhHHHHHHHHHHHHheecccHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHhhhHH
Confidence 9888765 688999999999999999999999999874 4688888888888888889999888888887653 10 1
Q ss_pred CCcccHHHHHHHhhcCCChHHHHHHHHHHHHhccCC-chHHHHHHHHHHHhcCCHHHHHHHH--------hhcCCC---C
Q 003584 334 IDDFTYPSVLNCFASNIDLNNAKSVHSLIVKTGFEG-YKFVNNALIDMYAKQGNLDCAFMVF--------NLMQDK---D 401 (809)
Q Consensus 334 p~~~t~~~ll~~~~~~~~~~~a~~i~~~~~~~g~~~-~~~~~~~li~~y~~~g~~~~A~~~f--------~~~~~~---~ 401 (809)
.+...|++...--.+...++.|.-++...+..-... ....|..+...=-+-|+......+. +.+... |
T Consensus 242 ~~e~lfvaFA~fEe~qkE~ERar~iykyAld~~pk~raeeL~k~~~~fEKqfGd~~gIEd~Iv~KRk~qYE~~v~~np~n 321 (677)
T KOG1915|consen 242 EAEILFVAFAEFEERQKEYERARFIYKYALDHIPKGRAEELYKKYTAFEKQFGDKEGIEDAIVGKRKFQYEKEVSKNPYN 321 (677)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCcccHHHHHHHHHHHHHHhcchhhhHHHHhhhhhhHHHHHHHhCCCC
Confidence 112223333333345677888888888888763221 1345555555555556644333322 222222 4
Q ss_pred HhHHHHHHHHHHhcCCHHHHHHHHHHHhhcCCccCHh-------HHHH---HHHHHhcccchhHHHHHHHHHHHhCCCCC
Q 003584 402 VISWTSLITGCAYHGSYEEALKYFSDMRISGICPDHV-------VVSS---ILSACAELTVLEFGQQVHAVFLKSGGCSS 471 (809)
Q Consensus 402 ~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~-------t~~~---ll~a~~~~~~~~~a~~~~~~~~~~g~~~~ 471 (809)
-.+|-..+..--..|+.+...++|++.... ++|-.. .|.- .+-.=....+.+.++++++..++ -++..
T Consensus 322 YDsWfdylrL~e~~g~~~~Ire~yErAIan-vpp~~ekr~W~RYIYLWinYalyeEle~ed~ertr~vyq~~l~-lIPHk 399 (677)
T KOG1915|consen 322 YDSWFDYLRLEESVGDKDRIRETYERAIAN-VPPASEKRYWRRYIYLWINYALYEELEAEDVERTRQVYQACLD-LIPHK 399 (677)
T ss_pred chHHHHHHHHHHhcCCHHHHHHHHHHHHcc-CCchhHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHh-hcCcc
Confidence 567878888888889999999999998865 455221 1111 11111346789999999999988 45667
Q ss_pred hhHHhHHHHHHH----hcCCHHHHHHHHHhcC--CCCeeechHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHH
Q 003584 472 LSVDNSLVLVYA----KCGCINDANRVFDSMH--TRDVITWTALIMGCAQNGKGKEALQFYDQMLARGTKPDYITFVGLL 545 (809)
Q Consensus 472 ~~~~~~li~~y~----k~g~~~~A~~~~~~~~--~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~pd~~t~~~ll 545 (809)
..++..+--+|+ ++.++..|.+++.... .|...++..-|..-.+.++++...+++++.++-+ +-|..++....
T Consensus 400 kFtFaKiWlmyA~feIRq~~l~~ARkiLG~AIG~cPK~KlFk~YIelElqL~efDRcRkLYEkfle~~-Pe~c~~W~kya 478 (677)
T KOG1915|consen 400 KFTFAKIWLMYAQFEIRQLNLTGARKILGNAIGKCPKDKLFKGYIELELQLREFDRCRKLYEKFLEFS-PENCYAWSKYA 478 (677)
T ss_pred cchHHHHHHHHHHHHHHHcccHHHHHHHHHHhccCCchhHHHHHHHHHHHHhhHHHHHHHHHHHHhcC-hHhhHHHHHHH
Confidence 778877776776 6789999999998776 5667778888888889999999999999999853 33456888877
Q ss_pred HHHHccCCHHHHHHHHHHhHHhhCCCCChHHHHHHHHHHhhcCCHHHHHHHHHhCcCC-CCHHHHHHHHHHHH-----hc
Q 003584 546 FACSHAGLAENARWYFESMDKVYGIKPGPDHYACMIDLLGRSGKLIEAKALLDQMVGE-PDATVWKALLSACR-----VH 619 (809)
Q Consensus 546 ~a~~~~g~~~~a~~~~~~m~~~~~~~p~~~~~~~li~~~~~~g~~~eA~~~~~~m~~~-p~~~~~~~ll~a~~-----~~ 619 (809)
.-=...|+.+.|..+|+.......+......|.+.|+-=...|.++.|..++++.... +...+|-++..--. ..
T Consensus 479 ElE~~LgdtdRaRaifelAi~qp~ldmpellwkaYIdFEi~~~E~ekaR~LYerlL~rt~h~kvWisFA~fe~s~~~~~~ 558 (677)
T KOG1915|consen 479 ELETSLGDTDRARAIFELAISQPALDMPELLWKAYIDFEIEEGEFEKARALYERLLDRTQHVKVWISFAKFEASASEGQE 558 (677)
T ss_pred HHHHHhhhHHHHHHHHHHHhcCcccccHHHHHHHhhhhhhhcchHHHHHHHHHHHHHhcccchHHHhHHHHhcccccccc
Confidence 7778899999999999988876445555567888888888999999999999999863 55668888765433 33
Q ss_pred C-----------ChhHHHHHHHHHhc----cCCCCC--ccHHhHhhhhhhcCChhHHHHHHHHHH
Q 003584 620 G-----------DLELGERAANNLFE----LEPMNA--MPYVQLSNMYSTAGKWEDAARVRKLMK 667 (809)
Q Consensus 620 g-----------~~~~A~~~~~~~~~----~~p~~~--~~~~~l~~~~~~~g~~~~A~~~~~~m~ 667 (809)
+ +...|..+|+++.. .+|... ..+....++=...|...+...+-.+|.
T Consensus 559 ~~~~~~~e~~~~~~~~AR~iferAn~~~k~~~~KeeR~~LLEaw~~~E~~~G~~~d~~~V~s~mP 623 (677)
T KOG1915|consen 559 DEDLAELEITDENIKRARKIFERANTYLKESTPKEERLMLLEAWKNMEETFGTEGDVERVQSKMP 623 (677)
T ss_pred ccchhhhhcchhHHHHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHHhcCchhhHHHHHHhcc
Confidence 3 55677778877754 233221 122233344455666666666666664
No 42
>PRK10747 putative protoheme IX biogenesis protein; Provisional
Probab=99.38 E-value=3.3e-10 Score=121.85 Aligned_cols=275 Identities=12% Similarity=0.079 Sum_probs=199.0
Q ss_pred cCCHHHHHHHHhhcCCC--CHh-HHHHHHHHHHhcCCHHHHHHHHHHHhhcCCccCHhHHH--HHHHHHhcccchhHHHH
Q 003584 384 QGNLDCAFMVFNLMQDK--DVI-SWTSLITGCAYHGSYEEALKYFSDMRISGICPDHVVVS--SILSACAELTVLEFGQQ 458 (809)
Q Consensus 384 ~g~~~~A~~~f~~~~~~--~~~-~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~--~ll~a~~~~~~~~~a~~ 458 (809)
.|+++.|++......+. ++. .|-.......+.|++++|.+.+.++.+. .|+..... .....+...|+.+.|..
T Consensus 97 eGd~~~A~k~l~~~~~~~~~p~l~~llaA~aA~~~g~~~~A~~~l~~A~~~--~~~~~~~~~l~~a~l~l~~g~~~~Al~ 174 (398)
T PRK10747 97 EGDYQQVEKLMTRNADHAEQPVVNYLLAAEAAQQRGDEARANQHLERAAEL--ADNDQLPVEITRVRIQLARNENHAARH 174 (398)
T ss_pred CCCHHHHHHHHHHHHhcccchHHHHHHHHHHHHHCCCHHHHHHHHHHHHhc--CCcchHHHHHHHHHHHHHCCCHHHHHH
Confidence 57777777777765542 222 3322233446778888888888888754 45543333 22445677788888888
Q ss_pred HHHHHHHhCCCCChhHHhHHHHHHHhcCCHHHHHHHHHhcCCCCee-----------echHHHHHHHhcCChHHHHHHHH
Q 003584 459 VHAVFLKSGGCSSLSVDNSLVLVYAKCGCINDANRVFDSMHTRDVI-----------TWTALIMGCAQNGKGKEALQFYD 527 (809)
Q Consensus 459 ~~~~~~~~g~~~~~~~~~~li~~y~k~g~~~~A~~~~~~~~~~~~~-----------~~~~li~~~~~~g~~~~A~~l~~ 527 (809)
.++.+.+.. +.+..+...+...|.+.|++++|.+++..+.+.... +|..++.......+.+...++++
T Consensus 175 ~l~~~~~~~-P~~~~al~ll~~~~~~~gdw~~a~~~l~~l~k~~~~~~~~~~~l~~~a~~~l~~~~~~~~~~~~l~~~w~ 253 (398)
T PRK10747 175 GVDKLLEVA-PRHPEVLRLAEQAYIRTGAWSSLLDILPSMAKAHVGDEEHRAMLEQQAWIGLMDQAMADQGSEGLKRWWK 253 (398)
T ss_pred HHHHHHhcC-CCCHHHHHHHHHHHHHHHhHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHH
Confidence 888887766 556778888889999999999999888888743221 23333443344455566666666
Q ss_pred HHHHCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHhHHhhCCCCChHHHHHHHHHHhhcCCHHHHHHHHHhCcC-CCC-
Q 003584 528 QMLARGTKPDYITFVGLLFACSHAGLAENARWYFESMDKVYGIKPGPDHYACMIDLLGRSGKLIEAKALLDQMVG-EPD- 605 (809)
Q Consensus 528 ~m~~~g~~pd~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~~~~~~~li~~~~~~g~~~eA~~~~~~m~~-~p~- 605 (809)
.+.+. .+.+......+..++...|+.++|.+.++...+ ..|+.... ++......++.+++.+..++... .|+
T Consensus 254 ~lp~~-~~~~~~~~~~~A~~l~~~g~~~~A~~~L~~~l~---~~~~~~l~--~l~~~l~~~~~~~al~~~e~~lk~~P~~ 327 (398)
T PRK10747 254 NQSRK-TRHQVALQVAMAEHLIECDDHDTAQQIILDGLK---RQYDERLV--LLIPRLKTNNPEQLEKVLRQQIKQHGDT 327 (398)
T ss_pred hCCHH-HhCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHh---cCCCHHHH--HHHhhccCCChHHHHHHHHHHHhhCCCC
Confidence 66443 345667888899999999999999999988764 34555322 22333355999999999988775 355
Q ss_pred HHHHHHHHHHHHhcCChhHHHHHHHHHhccCCCCCccHHhHhhhhhhcCChhHHHHHHHHHHh
Q 003584 606 ATVWKALLSACRVHGDLELGERAANNLFELEPMNAMPYVQLSNMYSTAGKWEDAARVRKLMKS 668 (809)
Q Consensus 606 ~~~~~~ll~a~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~ 668 (809)
+..+..+...|...|++++|.+.|+++++.+|++ ..|..|+.++.+.|+.++|.+++++-..
T Consensus 328 ~~l~l~lgrl~~~~~~~~~A~~~le~al~~~P~~-~~~~~La~~~~~~g~~~~A~~~~~~~l~ 389 (398)
T PRK10747 328 PLLWSTLGQLLMKHGEWQEASLAFRAALKQRPDA-YDYAWLADALDRLHKPEEAAAMRRDGLM 389 (398)
T ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCH-HHHHHHHHHHHHcCCHHHHHHHHHHHHh
Confidence 4478899999999999999999999999999965 5678999999999999999999987643
No 43
>KOG1155 consensus Anaphase-promoting complex (APC), Cdc23 subunit [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=99.37 E-value=5e-09 Score=105.53 Aligned_cols=311 Identities=13% Similarity=0.112 Sum_probs=216.8
Q ss_pred hhcCCChHHHHHHHHHHHHhccCCchHHHHHHHHHHHhcCCHHHHHHHHhhcCCCCHhHHH-HHHHHHHhcCCHHHHHHH
Q 003584 346 FASNIDLNNAKSVHSLIVKTGFEGYKFVNNALIDMYAKQGNLDCAFMVFNLMQDKDVISWT-SLITGCAYHGSYEEALKY 424 (809)
Q Consensus 346 ~~~~~~~~~a~~i~~~~~~~g~~~~~~~~~~li~~y~~~g~~~~A~~~f~~~~~~~~~~~~-~li~~~~~~g~~~~A~~~ 424 (809)
....|..+.|...+...+.. -+..|.+-+....-..+.+.+..+....+..+...-. -+..+|....+.++++.-
T Consensus 174 ~k~~~~~s~A~~sfv~~v~~----~P~~W~AWleL~~lit~~e~~~~l~~~l~~~~h~M~~~F~~~a~~el~q~~e~~~k 249 (559)
T KOG1155|consen 174 LKELGLLSLAIDSFVEVVNR----YPWFWSAWLELSELITDIEILSILVVGLPSDMHWMKKFFLKKAYQELHQHEEALQK 249 (559)
T ss_pred HHhhchHHHHHHHHHHHHhc----CCcchHHHHHHHHhhchHHHHHHHHhcCcccchHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34455555555555544322 1233444444333344444444444333332211111 133455555677777777
Q ss_pred HHHHhhcCCccCHhHHHHHHHHHhcccchhHHHHHHHHHHHhCC--CCChhHHhHHHHHHHhcCC--HH-HHHHHHHhcC
Q 003584 425 FSDMRISGICPDHVVVSSILSACAELTVLEFGQQVHAVFLKSGG--CSSLSVDNSLVLVYAKCGC--IN-DANRVFDSMH 499 (809)
Q Consensus 425 ~~~m~~~g~~p~~~t~~~ll~a~~~~~~~~~a~~~~~~~~~~g~--~~~~~~~~~li~~y~k~g~--~~-~A~~~~~~~~ 499 (809)
.......|+.-+...-+....+.-...++++|+.+|+.+.+... -.|..+|+.++ |.+..+ +. -|..++ .+.
T Consensus 250 ~e~l~~~gf~~~~~i~~~~A~~~y~~rDfD~a~s~Feei~knDPYRl~dmdlySN~L--Yv~~~~skLs~LA~~v~-~id 326 (559)
T KOG1155|consen 250 KERLSSVGFPNSMYIKTQIAAASYNQRDFDQAESVFEEIRKNDPYRLDDMDLYSNVL--YVKNDKSKLSYLAQNVS-NID 326 (559)
T ss_pred HHHHHhccCCccHHHHHHHHHHHhhhhhHHHHHHHHHHHHhcCCCcchhHHHHhHHH--HHHhhhHHHHHHHHHHH-Hhc
Confidence 77777777655544444444445567788889999988888742 12556665554 333332 22 122222 222
Q ss_pred CCCeeechHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHH-HHHHHHHHHHccCCHHHHHHHHHHhHHhhCCCC-ChHHH
Q 003584 500 TRDVITWTALIMGCAQNGKGKEALQFYDQMLARGTKPDYI-TFVGLLFACSHAGLAENARWYFESMDKVYGIKP-GPDHY 577 (809)
Q Consensus 500 ~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~pd~~-t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p-~~~~~ 577 (809)
+--+.|...+.+-|+..++.++|...|++.++ +.|... .|..+..-|....+...|++.++... .+.| |-..|
T Consensus 327 KyR~ETCCiIaNYYSlr~eHEKAv~YFkRALk--LNp~~~~aWTLmGHEyvEmKNt~AAi~sYRrAv---di~p~DyRAW 401 (559)
T KOG1155|consen 327 KYRPETCCIIANYYSLRSEHEKAVMYFKRALK--LNPKYLSAWTLMGHEYVEMKNTHAAIESYRRAV---DINPRDYRAW 401 (559)
T ss_pred cCCccceeeehhHHHHHHhHHHHHHHHHHHHh--cCcchhHHHHHhhHHHHHhcccHHHHHHHHHHH---hcCchhHHHH
Confidence 33455677778888999999999999999998 466654 67777788999999999999999887 4555 66889
Q ss_pred HHHHHHHhhcCCHHHHHHHHHhCcC-CC-CHHHHHHHHHHHHhcCChhHHHHHHHHHhccCCCCCccHHhHhhhhhhcCC
Q 003584 578 ACMIDLLGRSGKLIEAKALLDQMVG-EP-DATVWKALLSACRVHGDLELGERAANNLFELEPMNAMPYVQLSNMYSTAGK 655 (809)
Q Consensus 578 ~~li~~~~~~g~~~eA~~~~~~m~~-~p-~~~~~~~ll~a~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~ 655 (809)
-.|..+|.-.+...-|+-+|++... +| |...|.+|+..|.+.++.++|+..|.+++.....+...|+.|+++|-+.++
T Consensus 402 YGLGQaYeim~Mh~YaLyYfqkA~~~kPnDsRlw~aLG~CY~kl~~~~eAiKCykrai~~~dte~~~l~~LakLye~l~d 481 (559)
T KOG1155|consen 402 YGLGQAYEIMKMHFYALYYFQKALELKPNDSRLWVALGECYEKLNRLEEAIKCYKRAILLGDTEGSALVRLAKLYEELKD 481 (559)
T ss_pred hhhhHHHHHhcchHHHHHHHHHHHhcCCCchHHHHHHHHHHHHhccHHHHHHHHHHHHhccccchHHHHHHHHHHHHHHh
Confidence 9999999999999999999999875 44 677999999999999999999999999999887788999999999999999
Q ss_pred hhHHHHHHHHHHh
Q 003584 656 WEDAARVRKLMKS 668 (809)
Q Consensus 656 ~~~A~~~~~~m~~ 668 (809)
.++|...+++-.+
T Consensus 482 ~~eAa~~yek~v~ 494 (559)
T KOG1155|consen 482 LNEAAQYYEKYVE 494 (559)
T ss_pred HHHHHHHHHHHHH
Confidence 9999999988765
No 44
>TIGR00540 hemY_coli hemY protein. This is an uncharacterized protein encoded next to a heme-biosynthetic enzyme in two gamma division proteobacteria (E. coli and H. influenzae). It is known in no other species. The gene symbol hemY is unfortunate in that an unrelated protein, protoporphyrinogen oxidase, is designated as HemG in E. coli but as HemY in Bacillus subtilis.
Probab=99.37 E-value=4.8e-10 Score=121.25 Aligned_cols=290 Identities=14% Similarity=0.028 Sum_probs=174.5
Q ss_pred hcCChhHHHHHHHHHHHCCCCCCccc-HHHHHHHhhcCCChHHHHHHHHHHHHhccCCchHHHHHHHHHHHhcCCHHHHH
Q 003584 313 RQGFHKEALSLFKKMHARDIKIDDFT-YPSVLNCFASNIDLNNAKSVHSLIVKTGFEGYKFVNNALIDMYAKQGNLDCAF 391 (809)
Q Consensus 313 ~~g~~~~A~~~~~~m~~~g~~p~~~t-~~~ll~~~~~~~~~~~a~~i~~~~~~~g~~~~~~~~~~li~~y~~~g~~~~A~ 391 (809)
..|+++.|.+.+.+..+. .|+... +.....+....|+.+.+.+.+..+.+..-.+...+.-.....+...|+++.|.
T Consensus 96 ~~g~~~~A~~~l~~~~~~--~~~~~~~~llaA~aa~~~g~~~~A~~~l~~a~~~~p~~~l~~~~~~a~l~l~~~~~~~Al 173 (409)
T TIGR00540 96 AEGDYAKAEKLIAKNADH--AAEPVLNLIKAAEAAQQRGDEARANQHLEEAAELAGNDNILVEIARTRILLAQNELHAAR 173 (409)
T ss_pred hCCCHHHHHHHHHHHhhc--CCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCcCchHHHHHHHHHHHHCCCHHHHH
Confidence 356777777776665543 233222 23334455566777777777776655432222234444567778888888888
Q ss_pred HHHhhcCC---CCHhHHHHHHHHHHhcCCHHHHHHHHHHHhhcCCccCHhHHHHHHHHHhcccchhHHHHHHHHHHHhCC
Q 003584 392 MVFNLMQD---KDVISWTSLITGCAYHGSYEEALKYFSDMRISGICPDHVVVSSILSACAELTVLEFGQQVHAVFLKSGG 468 (809)
Q Consensus 392 ~~f~~~~~---~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~~~~~~a~~~~~~~~~~g~ 468 (809)
..++.+.+ .+...+..+...|.+.|++++|.+++..+.+.++.+.......-..+.
T Consensus 174 ~~l~~l~~~~P~~~~~l~ll~~~~~~~~d~~~a~~~l~~l~k~~~~~~~~~~~l~~~a~--------------------- 232 (409)
T TIGR00540 174 HGVDKLLEMAPRHKEVLKLAEEAYIRSGAWQALDDIIDNMAKAGLFDDEEFADLEQKAE--------------------- 232 (409)
T ss_pred HHHHHHHHhCCCCHHHHHHHHHHHHHHhhHHHHHHHHHHHHHcCCCCHHHHHHHHHHHH---------------------
Confidence 88888765 256677788888888899998888888888876432222111111110
Q ss_pred CCChhHHhHHHHHHHhcCCHHHHHHHHHhcCC---CCeeechHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHH---H
Q 003584 469 CSSLSVDNSLVLVYAKCGCINDANRVFDSMHT---RDVITWTALIMGCAQNGKGKEALQFYDQMLARGTKPDYITF---V 542 (809)
Q Consensus 469 ~~~~~~~~~li~~y~k~g~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~pd~~t~---~ 542 (809)
..+++.-......+...+..+..+. .+...+..+...+...|+.++|.+++++..+. .||.... .
T Consensus 233 -------~~~l~~~~~~~~~~~L~~~~~~~p~~~~~~~~l~~~~a~~l~~~g~~~~A~~~l~~~l~~--~pd~~~~~~~~ 303 (409)
T TIGR00540 233 -------IGLLDEAMADEGIDGLLNWWKNQPRHRRHNIALKIALAEHLIDCDDHDSAQEIIFDGLKK--LGDDRAISLPL 303 (409)
T ss_pred -------HHHHHHHHHhcCHHHHHHHHHHCCHHHhCCHHHHHHHHHHHHHCCChHHHHHHHHHHHhh--CCCcccchhHH
Confidence 0001111111223333444444442 35666677777777777777777777777774 4444321 1
Q ss_pred HHHHHHHccCCHHHHHHHHHHhHHhhCCCCChHHHHHHHHHHhhcCCHHHHHHHHHh--Cc-CCCCHHHHHHHHHHHHhc
Q 003584 543 GLLFACSHAGLAENARWYFESMDKVYGIKPGPDHYACMIDLLGRSGKLIEAKALLDQ--MV-GEPDATVWKALLSACRVH 619 (809)
Q Consensus 543 ~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~~~~~~~li~~~~~~g~~~eA~~~~~~--m~-~~p~~~~~~~ll~a~~~~ 619 (809)
.........++.+.+.+.++...+...-.|+.....++..++.+.|++++|.+.|+. .. ..||...+..+...+.+.
T Consensus 304 l~~~~~l~~~~~~~~~~~~e~~lk~~p~~~~~~ll~sLg~l~~~~~~~~~A~~~le~a~a~~~~p~~~~~~~La~ll~~~ 383 (409)
T TIGR00540 304 CLPIPRLKPEDNEKLEKLIEKQAKNVDDKPKCCINRALGQLLMKHGEFIEAADAFKNVAACKEQLDANDLAMAADAFDQA 383 (409)
T ss_pred HHHhhhcCCCChHHHHHHHHHHHHhCCCChhHHHHHHHHHHHHHcccHHHHHHHHHHhHHhhcCCCHHHHHHHHHHHHHc
Confidence 111122334667777777777665433333224555777788888888888888883 33 257777777888888888
Q ss_pred CChhHHHHHHHHHhc
Q 003584 620 GDLELGERAANNLFE 634 (809)
Q Consensus 620 g~~~~A~~~~~~~~~ 634 (809)
|+.++|.+++++.++
T Consensus 384 g~~~~A~~~~~~~l~ 398 (409)
T TIGR00540 384 GDKAEAAAMRQDSLG 398 (409)
T ss_pred CCHHHHHHHHHHHHH
Confidence 888888888887654
No 45
>KOG2003 consensus TPR repeat-containing protein [General function prediction only]
Probab=99.37 E-value=3.2e-10 Score=113.04 Aligned_cols=436 Identities=13% Similarity=0.043 Sum_probs=262.2
Q ss_pred HHHHhhCCChHHHHHHHHHHHHCCCCCCcchHHH-HHHHHhccCChHHHHHHHHHHHHhCCCCc----hhHHHHHHHHHH
Q 003584 207 ITGYSQNGYGFKAIECFRDMRVEGVESNQFTFPS-ILTACAAVSARDFGAQVHGCILSSGFEAN----VYVQSALIDMYA 281 (809)
Q Consensus 207 i~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~-ll~~~~~~~~~~~a~~~~~~~~~~g~~~~----~~~~~~Li~~y~ 281 (809)
..-|.-+....+|+..|+-..+...-||.-.+.. +-+.+.+.+.+.+|.+.+...+..-...+ ....+.+.-.+.
T Consensus 208 aqqy~~ndm~~ealntyeiivknkmf~nag~lkmnigni~~kkr~fskaikfyrmaldqvpsink~~rikil~nigvtfi 287 (840)
T KOG2003|consen 208 AQQYEANDMTAEALNTYEIIVKNKMFPNAGILKMNIGNIHFKKREFSKAIKFYRMALDQVPSINKDMRIKILNNIGVTFI 287 (840)
T ss_pred HHHhhhhHHHHHHhhhhhhhhcccccCCCceeeeeecceeeehhhHHHHHHHHHHHHhhccccchhhHHHHHhhcCeeEE
Confidence 3445555566666666666666555555433221 12233445556666666665554422222 223344445567
Q ss_pred hCCChHHHHHHHhccC--CCCeeeHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCcccHHHHHHHhhcCCChHHHHHHH
Q 003584 282 KCGDLDSARRLLEYSE--IDNEVSWNSMIVGFARQGFHKEALSLFKKMHARDIKIDDFTYPSVLNCFASNIDLNNAKSVH 359 (809)
Q Consensus 282 ~~g~~~~A~~~f~~~~--~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~i~ 359 (809)
+.|++++|...|+... .||..+--.|+-.+..-|+.++..+.|.+|......||..-|.. ...
T Consensus 288 q~gqy~dainsfdh~m~~~pn~~a~~nl~i~~f~i~d~ekmkeaf~kli~ip~~~dddkyi~------~~d--------- 352 (840)
T KOG2003|consen 288 QAGQYDDAINSFDHCMEEAPNFIAALNLIICAFAIGDAEKMKEAFQKLIDIPGEIDDDKYIK------EKD--------- 352 (840)
T ss_pred ecccchhhHhhHHHHHHhCccHHhhhhhhhhheecCcHHHHHHHHHHHhcCCCCCCcccccC------CcC---------
Confidence 7888888888887654 35555444455555567888888888888877655666554410 000
Q ss_pred HHHHHhccCCchHHHH-----HHHHHHHhcCC--HHH----HHHHHhhcCCCCHh---HHH------------------H
Q 003584 360 SLIVKTGFEGYKFVNN-----ALIDMYAKQGN--LDC----AFMVFNLMQDKDVI---SWT------------------S 407 (809)
Q Consensus 360 ~~~~~~g~~~~~~~~~-----~li~~y~~~g~--~~~----A~~~f~~~~~~~~~---~~~------------------~ 407 (809)
.|+....| -.+.-..+... .++ |.++..-+..+|-. -|. .
T Consensus 353 --------dp~~~ll~eai~nd~lk~~ek~~ka~aek~i~ta~kiiapvi~~~fa~g~dwcle~lk~s~~~~la~dlei~ 424 (840)
T KOG2003|consen 353 --------DPDDNLLNEAIKNDHLKNMEKENKADAEKAIITAAKIIAPVIAPDFAAGCDWCLESLKASQHAELAIDLEIN 424 (840)
T ss_pred --------CcchHHHHHHHhhHHHHHHHHhhhhhHHHHHHHHHHHhccccccchhcccHHHHHHHHHhhhhhhhhhhhhh
Confidence 11111111 11111111111 111 11222222222210 010 1
Q ss_pred HHHHHHhcCCHHHHHHHHHHHhhcCCccCHhHHH--HHHHHHhcccchhHHHHHHHHHHHhCCCCChhHHhHHHHHHHhc
Q 003584 408 LITGCAYHGSYEEALKYFSDMRISGICPDHVVVS--SILSACAELTVLEFGQQVHAVFLKSGGCSSLSVDNSLVLVYAKC 485 (809)
Q Consensus 408 li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~--~ll~a~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~y~k~ 485 (809)
-...|.++|+++.|+++++-..+..-+.-+..-+ ..|.-.....++..|.++-..++... .-+....+.-.+.-...
T Consensus 425 ka~~~lk~~d~~~aieilkv~~~kdnk~~saaa~nl~~l~flqggk~~~~aqqyad~aln~d-ryn~~a~~nkgn~~f~n 503 (840)
T KOG2003|consen 425 KAGELLKNGDIEGAIEILKVFEKKDNKTASAAANNLCALRFLQGGKDFADAQQYADIALNID-RYNAAALTNKGNIAFAN 503 (840)
T ss_pred HHHHHHhccCHHHHHHHHHHHHhccchhhHHHhhhhHHHHHHhcccchhHHHHHHHHHhccc-ccCHHHhhcCCceeeec
Confidence 1345789999999999998887653222222222 22222222345666666665554322 11111111112223347
Q ss_pred CCHHHHHHHHHhcCCCCeeechHHHH---HHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCCHHHHHHHHH
Q 003584 486 GCINDANRVFDSMHTRDVITWTALIM---GCAQNGKGKEALQFYDQMLARGTKPDYITFVGLLFACSHAGLAENARWYFE 562 (809)
Q Consensus 486 g~~~~A~~~~~~~~~~~~~~~~~li~---~~~~~g~~~~A~~l~~~m~~~g~~pd~~t~~~ll~a~~~~g~~~~a~~~~~ 562 (809)
|++++|.+.+.+....|...-.+|.+ .+-..|+.++|+..|-++..- +..+...+..+.+.|....+..+|++++.
T Consensus 504 gd~dka~~~ykeal~ndasc~ealfniglt~e~~~~ldeald~f~klh~i-l~nn~evl~qianiye~led~aqaie~~~ 582 (840)
T KOG2003|consen 504 GDLDKAAEFYKEALNNDASCTEALFNIGLTAEALGNLDEALDCFLKLHAI-LLNNAEVLVQIANIYELLEDPAQAIELLM 582 (840)
T ss_pred CcHHHHHHHHHHHHcCchHHHHHHHHhcccHHHhcCHHHHHHHHHHHHHH-HHhhHHHHHHHHHHHHHhhCHHHHHHHHH
Confidence 99999999999998877654444433 366789999999999888763 34456678888899999999999999986
Q ss_pred HhHHhhCCCCChHHHHHHHHHHhhcCCHHHHHHHHHh-CcC-CCCHHHHHHHHHHHHhcCChhHHHHHHHHHhccCCCCC
Q 003584 563 SMDKVYGIKPGPDHYACMIDLLGRSGKLIEAKALLDQ-MVG-EPDATVWKALLSACRVHGDLELGERAANNLFELEPMNA 640 (809)
Q Consensus 563 ~m~~~~~~~p~~~~~~~li~~~~~~g~~~eA~~~~~~-m~~-~p~~~~~~~ll~a~~~~g~~~~A~~~~~~~~~~~p~~~ 640 (809)
.... -++.|+...+-|.++|-+.|+-..|.+..-. ..- +-+..+..=|..-|....-.+.|+..|+++--+.|+..
T Consensus 583 q~~s--lip~dp~ilskl~dlydqegdksqafq~~ydsyryfp~nie~iewl~ayyidtqf~ekai~y~ekaaliqp~~~ 660 (840)
T KOG2003|consen 583 QANS--LIPNDPAILSKLADLYDQEGDKSQAFQCHYDSYRYFPCNIETIEWLAAYYIDTQFSEKAINYFEKAALIQPNQS 660 (840)
T ss_pred Hhcc--cCCCCHHHHHHHHHHhhcccchhhhhhhhhhcccccCcchHHHHHHHHHHHhhHHHHHHHHHHHHHHhcCccHH
Confidence 6542 3444778999999999999999999886432 221 23444444455555666668999999999999999777
Q ss_pred ccHHhHhhhhhhcCChhHHHHHHHHHHhC
Q 003584 641 MPYVQLSNMYSTAGKWEDAARVRKLMKSR 669 (809)
Q Consensus 641 ~~~~~l~~~~~~~g~~~~A~~~~~~m~~~ 669 (809)
.-...++.++.+.|++..|..+++....+
T Consensus 661 kwqlmiasc~rrsgnyqka~d~yk~~hrk 689 (840)
T KOG2003|consen 661 KWQLMIASCFRRSGNYQKAFDLYKDIHRK 689 (840)
T ss_pred HHHHHHHHHHHhcccHHHHHHHHHHHHHh
Confidence 66677788889999999999999988654
No 46
>KOG1126 consensus DNA-binding cell division cycle control protein [Cell cycle control, cell division, chromosome partitioning]
Probab=99.36 E-value=8.3e-11 Score=123.83 Aligned_cols=244 Identities=13% Similarity=0.138 Sum_probs=195.2
Q ss_pred CHHHHHHHHHHHhhcCCccCHhHHHHHHHHHhcccchhHHHHHHHHHHHhCC--CCChhHHhHHHHHHHhcCCHHH-HHH
Q 003584 417 SYEEALKYFSDMRISGICPDHVVVSSILSACAELTVLEFGQQVHAVFLKSGG--CSSLSVDNSLVLVYAKCGCIND-ANR 493 (809)
Q Consensus 417 ~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~~~~~~a~~~~~~~~~~g~--~~~~~~~~~li~~y~k~g~~~~-A~~ 493 (809)
+..+|+.+|...... +.-.......+-.+|...+++++++.+|+.+.+... -.+..+|++.+--+-+.=.+.. |..
T Consensus 334 ~~~~A~~~~~klp~h-~~nt~wvl~q~GrayFEl~~Y~~a~~~F~~~r~~~p~rv~~meiyST~LWHLq~~v~Ls~Laq~ 412 (638)
T KOG1126|consen 334 NCREALNLFEKLPSH-HYNTGWVLSQLGRAYFELIEYDQAERIFSLVRRIEPYRVKGMEIYSTTLWHLQDEVALSYLAQD 412 (638)
T ss_pred HHHHHHHHHHhhHHh-cCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccccccchhHHHHHHHHHHhhHHHHHHHHH
Confidence 568999999995543 333445666677899999999999999999987542 3467778776654433222221 222
Q ss_pred HHHhcCCCCeeechHHHHHHHhcCChHHHHHHHHHHHHCCCCC-CHHHHHHHHHHHHccCCHHHHHHHHHHhHHhhCCCC
Q 003584 494 VFDSMHTRDVITWTALIMGCAQNGKGKEALQFYDQMLARGTKP-DYITFVGLLFACSHAGLAENARWYFESMDKVYGIKP 572 (809)
Q Consensus 494 ~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p-d~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p 572 (809)
+. .+.+..+.+|.++.+.|.-+++.+.|++.|++.++ +.| ...+|..+..=+.....+|.|...|+... ..
T Consensus 413 Li-~~~~~sPesWca~GNcfSLQkdh~~Aik~f~RAiQ--ldp~faYayTLlGhE~~~~ee~d~a~~~fr~Al-----~~ 484 (638)
T KOG1126|consen 413 LI-DTDPNSPESWCALGNCFSLQKDHDTAIKCFKRAIQ--LDPRFAYAYTLLGHESIATEEFDKAMKSFRKAL-----GV 484 (638)
T ss_pred HH-hhCCCCcHHHHHhcchhhhhhHHHHHHHHHHHhhc--cCCccchhhhhcCChhhhhHHHHhHHHHHHhhh-----cC
Confidence 22 22244678999999999999999999999999998 577 55688888888888899999999997654 45
Q ss_pred ChHHHHH---HHHHHhhcCCHHHHHHHHHhCcC-CC-CHHHHHHHHHHHHhcCChhHHHHHHHHHhccCCCCCccHHhHh
Q 003584 573 GPDHYAC---MIDLLGRSGKLIEAKALLDQMVG-EP-DATVWKALLSACRVHGDLELGERAANNLFELEPMNAMPYVQLS 647 (809)
Q Consensus 573 ~~~~~~~---li~~~~~~g~~~eA~~~~~~m~~-~p-~~~~~~~ll~a~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~ 647 (809)
++.+|++ |.-.|.|.++++.|.-.|+++.. .| +.++...+...+.+.|+.|+|++++++++-++|.|+-.-+..+
T Consensus 485 ~~rhYnAwYGlG~vy~Kqek~e~Ae~~fqkA~~INP~nsvi~~~~g~~~~~~k~~d~AL~~~~~A~~ld~kn~l~~~~~~ 564 (638)
T KOG1126|consen 485 DPRHYNAWYGLGTVYLKQEKLEFAEFHFQKAVEINPSNSVILCHIGRIQHQLKRKDKALQLYEKAIHLDPKNPLCKYHRA 564 (638)
T ss_pred CchhhHHHHhhhhheeccchhhHHHHHHHhhhcCCccchhHHhhhhHHHHHhhhhhHHHHHHHHHHhcCCCCchhHHHHH
Confidence 6666665 45679999999999999999885 34 5667778888999999999999999999999999999999999
Q ss_pred hhhhhcCChhHHHHHHHHHHhC
Q 003584 648 NMYSTAGKWEDAARVRKLMKSR 669 (809)
Q Consensus 648 ~~~~~~g~~~~A~~~~~~m~~~ 669 (809)
.++...+++++|...++++++.
T Consensus 565 ~il~~~~~~~eal~~LEeLk~~ 586 (638)
T KOG1126|consen 565 SILFSLGRYVEALQELEELKEL 586 (638)
T ss_pred HHHHhhcchHHHHHHHHHHHHh
Confidence 9999999999999999999875
No 47
>KOG1173 consensus Anaphase-promoting complex (APC), Cdc16 subunit [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=99.35 E-value=9.5e-10 Score=113.50 Aligned_cols=196 Identities=16% Similarity=0.075 Sum_probs=157.2
Q ss_pred CCChhHHhHHHHHHHhcCCHHHHHHHHHhcCCCC---eeechHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHH
Q 003584 469 CSSLSVDNSLVLVYAKCGCINDANRVFDSMHTRD---VITWTALIMGCAQNGKGKEALQFYDQMLARGTKPDYITFVGLL 545 (809)
Q Consensus 469 ~~~~~~~~~li~~y~k~g~~~~A~~~~~~~~~~~---~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~pd~~t~~~ll 545 (809)
|....+|-++.--|.-.|+..+|++.|.+...-| ...|-.....|+-.|..++|+..+...-+. ++-....+.-+.
T Consensus 309 P~~a~sW~aVg~YYl~i~k~seARry~SKat~lD~~fgpaWl~fghsfa~e~EhdQAmaaY~tAarl-~~G~hlP~LYlg 387 (611)
T KOG1173|consen 309 PSKALSWFAVGCYYLMIGKYSEARRYFSKATTLDPTFGPAWLAFGHSFAGEGEHDQAMAAYFTAARL-MPGCHLPSLYLG 387 (611)
T ss_pred CCCCcchhhHHHHHHHhcCcHHHHHHHHHHhhcCccccHHHHHHhHHhhhcchHHHHHHHHHHHHHh-ccCCcchHHHHH
Confidence 4556667777777777899999999998876433 358999999999999999999988887763 222233444555
Q ss_pred HHHHccCCHHHHHHHHHHhHHhhCCCC-ChHHHHHHHHHHhhcCCHHHHHHHHHhCcC--------CC-CHHHHHHHHHH
Q 003584 546 FACSHAGLAENARWYFESMDKVYGIKP-GPDHYACMIDLLGRSGKLIEAKALLDQMVG--------EP-DATVWKALLSA 615 (809)
Q Consensus 546 ~a~~~~g~~~~a~~~~~~m~~~~~~~p-~~~~~~~li~~~~~~g~~~eA~~~~~~m~~--------~p-~~~~~~~ll~a 615 (809)
--|...++.+.|.++|.... ++.| |+...+-+.-+.-..+.+.+|..+|+.... ++ -.++|+.|+.+
T Consensus 388 mey~~t~n~kLAe~Ff~~A~---ai~P~Dplv~~Elgvvay~~~~y~~A~~~f~~~l~~ik~~~~e~~~w~p~~~NLGH~ 464 (611)
T KOG1173|consen 388 MEYMRTNNLKLAEKFFKQAL---AIAPSDPLVLHELGVVAYTYEEYPEALKYFQKALEVIKSVLNEKIFWEPTLNNLGHA 464 (611)
T ss_pred HHHHHhccHHHHHHHHHHHH---hcCCCcchhhhhhhheeehHhhhHHHHHHHHHHHHHhhhccccccchhHHHHhHHHH
Confidence 56888899999999998765 6666 445666666667778899999999987662 12 34578999999
Q ss_pred HHhcCChhHHHHHHHHHhccCCCCCccHHhHhhhhhhcCChhHHHHHHHHHHh
Q 003584 616 CRVHGDLELGERAANNLFELEPMNAMPYVQLSNMYSTAGKWEDAARVRKLMKS 668 (809)
Q Consensus 616 ~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~ 668 (809)
|++.+..++|+..+++++.+.|.++.+|..++-+|...|+.+.|...|.+...
T Consensus 465 ~Rkl~~~~eAI~~~q~aL~l~~k~~~~~asig~iy~llgnld~Aid~fhKaL~ 517 (611)
T KOG1173|consen 465 YRKLNKYEEAIDYYQKALLLSPKDASTHASIGYIYHLLGNLDKAIDHFHKALA 517 (611)
T ss_pred HHHHhhHHHHHHHHHHHHHcCCCchhHHHHHHHHHHHhcChHHHHHHHHHHHh
Confidence 99999999999999999999999999999999999999999999999988653
No 48
>PF13429 TPR_15: Tetratricopeptide repeat; PDB: 2VQ2_A 2PL2_B.
Probab=99.34 E-value=6.8e-12 Score=128.82 Aligned_cols=190 Identities=16% Similarity=0.132 Sum_probs=80.2
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHhhcCC--CCHhHHHHHHHHHHhcCCHHHHHHHHHHHhhcC-CccCHhHHHHHHHHHhc
Q 003584 373 VNNALIDMYAKQGNLDCAFMVFNLMQD--KDVISWTSLITGCAYHGSYEEALKYFSDMRISG-ICPDHVVVSSILSACAE 449 (809)
Q Consensus 373 ~~~~li~~y~~~g~~~~A~~~f~~~~~--~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g-~~p~~~t~~~ll~a~~~ 449 (809)
.+..++.. ...+++++|.+++...-+ ++...+..++..+.+.++++++.+++++..... ..++...|..+...+.+
T Consensus 80 ~~~~l~~l-~~~~~~~~A~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~a~~~~~ 158 (280)
T PF13429_consen 80 DYERLIQL-LQDGDPEEALKLAEKAYERDGDPRYLLSALQLYYRLGDYDEAEELLEKLEELPAAPDSARFWLALAEIYEQ 158 (280)
T ss_dssp ---------------------------------------H-HHHTT-HHHHHHHHHHHHH-T---T-HHHHHHHHHHHHH
T ss_pred cccccccc-cccccccccccccccccccccccchhhHHHHHHHHHhHHHHHHHHHHHHHhccCCCCCHHHHHHHHHHHHH
Confidence 33444444 455555666555544322 344455556666666666666666666655322 22344444444455555
Q ss_pred ccchhHHHHHHHHHHHhCCCCChhHHhHHHHHHHhcCCHHHHHHHHHhcC---CCCeeechHHHHHHHhcCChHHHHHHH
Q 003584 450 LTVLEFGQQVHAVFLKSGGCSSLSVDNSLVLVYAKCGCINDANRVFDSMH---TRDVITWTALIMGCAQNGKGKEALQFY 526 (809)
Q Consensus 450 ~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~y~k~g~~~~A~~~~~~~~---~~~~~~~~~li~~~~~~g~~~~A~~l~ 526 (809)
.|+.+.|...++.+++.. |.+..+.+.++.++...|+.+++.+++.... ..|...|..+..+|...|++++|+..|
T Consensus 159 ~G~~~~A~~~~~~al~~~-P~~~~~~~~l~~~li~~~~~~~~~~~l~~~~~~~~~~~~~~~~la~~~~~lg~~~~Al~~~ 237 (280)
T PF13429_consen 159 LGDPDKALRDYRKALELD-PDDPDARNALAWLLIDMGDYDEAREALKRLLKAAPDDPDLWDALAAAYLQLGRYEEALEYL 237 (280)
T ss_dssp CCHHHHHHHHHHHHHHH--TT-HHHHHHHHHHHCTTCHHHHHHHHHHHHHHH-HTSCCHCHHHHHHHHHHT-HHHHHHHH
T ss_pred cCCHHHHHHHHHHHHHcC-CCCHHHHHHHHHHHHHCCChHHHHHHHHHHHHHCcCHHHHHHHHHHHhccccccccccccc
Confidence 566666666666555554 3345556666667777777776666555443 345667777777777778888888888
Q ss_pred HHHHHCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHhH
Q 003584 527 DQMLARGTKPDYITFVGLLFACSHAGLAENARWYFESMD 565 (809)
Q Consensus 527 ~~m~~~g~~pd~~t~~~ll~a~~~~g~~~~a~~~~~~m~ 565 (809)
++.... .+.|..+...+..++...|+.++|.++.+...
T Consensus 238 ~~~~~~-~p~d~~~~~~~a~~l~~~g~~~~A~~~~~~~~ 275 (280)
T PF13429_consen 238 EKALKL-NPDDPLWLLAYADALEQAGRKDEALRLRRQAL 275 (280)
T ss_dssp HHHHHH-STT-HHHHHHHHHHHT----------------
T ss_pred cccccc-cccccccccccccccccccccccccccccccc
Confidence 777764 13355566677777777777777777765543
No 49
>TIGR00540 hemY_coli hemY protein. This is an uncharacterized protein encoded next to a heme-biosynthetic enzyme in two gamma division proteobacteria (E. coli and H. influenzae). It is known in no other species. The gene symbol hemY is unfortunate in that an unrelated protein, protoporphyrinogen oxidase, is designated as HemG in E. coli but as HemY in Bacillus subtilis.
Probab=99.32 E-value=2.5e-09 Score=115.65 Aligned_cols=217 Identities=12% Similarity=0.039 Sum_probs=140.0
Q ss_pred HHhcccchhHHHHHHHHHHHhCCCCChhHHhHHHHHHHhcCCHHHHHHHHHhcCCC---Ceeech----HHHHHHHhcCC
Q 003584 446 ACAELTVLEFGQQVHAVFLKSGGCSSLSVDNSLVLVYAKCGCINDANRVFDSMHTR---DVITWT----ALIMGCAQNGK 518 (809)
Q Consensus 446 a~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~y~k~g~~~~A~~~~~~~~~~---~~~~~~----~li~~~~~~g~ 518 (809)
.....|+.+.|...++.+.+.. +.+..+...+..+|...|++++|.+.++...+. +...+. ....++...+.
T Consensus 162 l~l~~~~~~~Al~~l~~l~~~~-P~~~~~l~ll~~~~~~~~d~~~a~~~l~~l~k~~~~~~~~~~~l~~~a~~~~l~~~~ 240 (409)
T TIGR00540 162 ILLAQNELHAARHGVDKLLEMA-PRHKEVLKLAEEAYIRSGAWQALDDIIDNMAKAGLFDDEEFADLEQKAEIGLLDEAM 240 (409)
T ss_pred HHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHHhhHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHH
Confidence 3344444444544444444443 334445555566666666666666666655532 111111 11112233333
Q ss_pred hHHHHHHHHHHHHCCC---CCCHHHHHHHHHHHHccCCHHHHHHHHHHhHHhhCCCCChHH---HHHHHHHHhhcCCHHH
Q 003584 519 GKEALQFYDQMLARGT---KPDYITFVGLLFACSHAGLAENARWYFESMDKVYGIKPGPDH---YACMIDLLGRSGKLIE 592 (809)
Q Consensus 519 ~~~A~~l~~~m~~~g~---~pd~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~~~~---~~~li~~~~~~g~~~e 592 (809)
.+++.+.+.++..... +.+...+..+...+...|+.++|.+.++...+. .|+... .....-.....++.++
T Consensus 241 ~~~~~~~L~~~~~~~p~~~~~~~~l~~~~a~~l~~~g~~~~A~~~l~~~l~~---~pd~~~~~~~~l~~~~~l~~~~~~~ 317 (409)
T TIGR00540 241 ADEGIDGLLNWWKNQPRHRRHNIALKIALAEHLIDCDDHDSAQEIIFDGLKK---LGDDRAISLPLCLPIPRLKPEDNEK 317 (409)
T ss_pred HhcCHHHHHHHHHHCCHHHhCCHHHHHHHHHHHHHCCChHHHHHHHHHHHhh---CCCcccchhHHHHHhhhcCCCChHH
Confidence 4444455656555321 136678888889999999999999999998864 344431 1112222334578888
Q ss_pred HHHHHHhCcC-CCC-H--HHHHHHHHHHHhcCChhHHHHHHH--HHhccCCCCCccHHhHhhhhhhcCChhHHHHHHHHH
Q 003584 593 AKALLDQMVG-EPD-A--TVWKALLSACRVHGDLELGERAAN--NLFELEPMNAMPYVQLSNMYSTAGKWEDAARVRKLM 666 (809)
Q Consensus 593 A~~~~~~m~~-~p~-~--~~~~~ll~a~~~~g~~~~A~~~~~--~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~m 666 (809)
+.+.+++... .|+ + ....++...|.+.|++++|.+.++ ..++..|++. .+..++.++.+.|+.++|.+++++.
T Consensus 318 ~~~~~e~~lk~~p~~~~~~ll~sLg~l~~~~~~~~~A~~~le~a~a~~~~p~~~-~~~~La~ll~~~g~~~~A~~~~~~~ 396 (409)
T TIGR00540 318 LEKLIEKQAKNVDDKPKCCINRALGQLLMKHGEFIEAADAFKNVAACKEQLDAN-DLAMAADAFDQAGDKAEAAAMRQDS 396 (409)
T ss_pred HHHHHHHHHHhCCCChhHHHHHHHHHHHHHcccHHHHHHHHHHhHHhhcCCCHH-HHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 8888877664 343 4 567899999999999999999999 5777888654 5779999999999999999999986
Q ss_pred H
Q 003584 667 K 667 (809)
Q Consensus 667 ~ 667 (809)
.
T Consensus 397 l 397 (409)
T TIGR00540 397 L 397 (409)
T ss_pred H
Confidence 4
No 50
>KOG1155 consensus Anaphase-promoting complex (APC), Cdc23 subunit [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=99.32 E-value=1.6e-08 Score=102.04 Aligned_cols=284 Identities=15% Similarity=0.093 Sum_probs=157.1
Q ss_pred HHHHhcCChhHHHHHHHHHHHCCCCCCcccHHHHHHHhhcCCChHHHHHHHHHHHHhcc--CCchHHHHHHHHHHHhcCC
Q 003584 309 VGFARQGFHKEALSLFKKMHARDIKIDDFTYPSVLNCFASNIDLNNAKSVHSLIVKTGF--EGYKFVNNALIDMYAKQGN 386 (809)
Q Consensus 309 ~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~i~~~~~~~g~--~~~~~~~~~li~~y~~~g~ 386 (809)
.++-...+.+++++-.......|+.-+...-+....+.-...+++.|+.+|+.+.+... -.|..+|+.++ |.+..+
T Consensus 235 ~a~~el~q~~e~~~k~e~l~~~gf~~~~~i~~~~A~~~y~~rDfD~a~s~Feei~knDPYRl~dmdlySN~L--Yv~~~~ 312 (559)
T KOG1155|consen 235 KAYQELHQHEEALQKKERLSSVGFPNSMYIKTQIAAASYNQRDFDQAESVFEEIRKNDPYRLDDMDLYSNVL--YVKNDK 312 (559)
T ss_pred HHHHHHHHHHHHHHHHHHHHhccCCccHHHHHHHHHHHhhhhhHHHHHHHHHHHHhcCCCcchhHHHHhHHH--HHHhhh
Confidence 34444456666666666666666544433333334444556677777777777766632 12344554444 333221
Q ss_pred --HHH-HHHHHhhcCCCCHhHHHHHHHHHHhcCCHHHHHHHHHHHhhcCCccC-HhHHHHHHHHHhcccchhHHHHHHHH
Q 003584 387 --LDC-AFMVFNLMQDKDVISWTSLITGCAYHGSYEEALKYFSDMRISGICPD-HVVVSSILSACAELTVLEFGQQVHAV 462 (809)
Q Consensus 387 --~~~-A~~~f~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~-~~t~~~ll~a~~~~~~~~~a~~~~~~ 462 (809)
+.- |..++ .+.+--+.|...+.+-|.-.++.++|...|++..+.+ |. ...|+.+-.-|....+...|.+.++.
T Consensus 313 skLs~LA~~v~-~idKyR~ETCCiIaNYYSlr~eHEKAv~YFkRALkLN--p~~~~aWTLmGHEyvEmKNt~AAi~sYRr 389 (559)
T KOG1155|consen 313 SKLSYLAQNVS-NIDKYRPETCCIIANYYSLRSEHEKAVMYFKRALKLN--PKYLSAWTLMGHEYVEMKNTHAAIESYRR 389 (559)
T ss_pred HHHHHHHHHHH-HhccCCccceeeehhHHHHHHhHHHHHHHHHHHHhcC--cchhHHHHHhhHHHHHhcccHHHHHHHHH
Confidence 111 22221 1222233444555556666677777777777776542 33 23344444456666666666666666
Q ss_pred HHHhCCCCChhHHhHHHHHHHhcCCHHHHHHHHHhcC---CCCeeechHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHH
Q 003584 463 FLKSGGCSSLSVDNSLVLVYAKCGCINDANRVFDSMH---TRDVITWTALIMGCAQNGKGKEALQFYDQMLARGTKPDYI 539 (809)
Q Consensus 463 ~~~~g~~~~~~~~~~li~~y~k~g~~~~A~~~~~~~~---~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~pd~~ 539 (809)
+++.. +.|-..|-.|.++|.-.+...-|+-.|++.. +.|...|.+|...|.+.++.++|++.|.+....| ..+..
T Consensus 390 Avdi~-p~DyRAWYGLGQaYeim~Mh~YaLyYfqkA~~~kPnDsRlw~aLG~CY~kl~~~~eAiKCykrai~~~-dte~~ 467 (559)
T KOG1155|consen 390 AVDIN-PRDYRAWYGLGQAYEIMKMHFYALYYFQKALELKPNDSRLWVALGECYEKLNRLEEAIKCYKRAILLG-DTEGS 467 (559)
T ss_pred HHhcC-chhHHHHhhhhHHHHHhcchHHHHHHHHHHHhcCCCchHHHHHHHHHHHHhccHHHHHHHHHHHHhcc-ccchH
Confidence 66654 4566666666777777777666766666654 3356667777777777777777777777666654 33455
Q ss_pred HHHHHHHHHHccCCHHHHHHHHHHhHHhh---C-CCC-ChHHHHHHHHHHhhcCCHHHHHHHHHh
Q 003584 540 TFVGLLFACSHAGLAENARWYFESMDKVY---G-IKP-GPDHYACMIDLLGRSGKLIEAKALLDQ 599 (809)
Q Consensus 540 t~~~ll~a~~~~g~~~~a~~~~~~m~~~~---~-~~p-~~~~~~~li~~~~~~g~~~eA~~~~~~ 599 (809)
.+..|...+.+.++.++|.++|+.-.+.. | +.| ......-|..-+.+.+++++|..+...
T Consensus 468 ~l~~LakLye~l~d~~eAa~~yek~v~~~~~eg~~~~~t~ka~~fLA~~f~k~~~~~~As~Ya~~ 532 (559)
T KOG1155|consen 468 ALVRLAKLYEELKDLNEAAQYYEKYVEVSELEGEIDDETIKARLFLAEYFKKMKDFDEASYYATL 532 (559)
T ss_pred HHHHHHHHHHHHHhHHHHHHHHHHHHHHHHhhcccchHHHHHHHHHHHHHHhhcchHHHHHHHHH
Confidence 66666677777777777766665544421 1 222 112222244445556666665554433
No 51
>KOG1915 consensus Cell cycle control protein (crooked neck) [Cell cycle control, cell division, chromosome partitioning]
Probab=99.29 E-value=5.3e-08 Score=98.35 Aligned_cols=423 Identities=11% Similarity=0.030 Sum_probs=257.7
Q ss_pred chHHHHHHHHHccCChhHHHHHhhhCCC---CCcchHHHHHHHHHcCCCchhHHHHHHHHHHcCCCCCcc-cHHHHHHHh
Q 003584 68 FTWNTMIAAYANSGRLREAKKLFNETPF---KNFFTWSSLIYGYSNYGLDIEAFELFWQMQLEGYRPSQY-TLDNVLRLC 143 (809)
Q Consensus 68 ~~~~~li~~~~~~g~~~~A~~~f~~~~~---~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~-t~~~ll~~~ 143 (809)
..|-.-...=-..+++..|+.+|++... ++...|---+..-.++.+...|..++++... +-|-+. .|-.-+-.=
T Consensus 74 ~~WikYaqwEesq~e~~RARSv~ERALdvd~r~itLWlkYae~Emknk~vNhARNv~dRAvt--~lPRVdqlWyKY~ymE 151 (677)
T KOG1915|consen 74 QVWIKYAQWEESQKEIQRARSVFERALDVDYRNITLWLKYAEFEMKNKQVNHARNVWDRAVT--ILPRVDQLWYKYIYME 151 (677)
T ss_pred HHHHHHHHHHHhHHHHHHHHHHHHHHHhcccccchHHHHHHHHHHhhhhHhHHHHHHHHHHH--hcchHHHHHHHHHHHH
Confidence 3444444444556778888888887543 5666777778888888888888888888776 334332 223333334
Q ss_pred hcCCCchHHHHHHHHHHHhCCCCchHHHHHHHHhhhcCCChhHHHHHhhhCCC-CCCcccHHHHHHHHhhCCChHHHHHH
Q 003584 144 SLKGLLQRGEQFHGYAIKTCFDLNAFVVTGLVDMYAKCKCIFEAEYLFKMFPD-GKNHVAWTTMITGYSQNGYGFKAIEC 222 (809)
Q Consensus 144 ~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~y~~~g~~~~A~~~f~~~~~-~~~~~~~~~li~~~~~~g~~~~A~~l 222 (809)
-..|++..|+++++...+- +|+...|++.|+.=.+-..++.|+.++++..- .|++.+|--...--.++|+...|..+
T Consensus 152 E~LgNi~gaRqiferW~~w--~P~eqaW~sfI~fElRykeieraR~IYerfV~~HP~v~~wikyarFE~k~g~~~~aR~V 229 (677)
T KOG1915|consen 152 EMLGNIAGARQIFERWMEW--EPDEQAWLSFIKFELRYKEIERARSIYERFVLVHPKVSNWIKYARFEEKHGNVALARSV 229 (677)
T ss_pred HHhcccHHHHHHHHHHHcC--CCcHHHHHHHHHHHHHhhHHHHHHHHHHHHheecccHHHHHHHHHHHHhcCcHHHHHHH
Confidence 4568888889988887654 68888999999998899999999999987542 28888888888888889999999988
Q ss_pred HHHHHHCCCCCCcchHHHHHHHH----hccCChHHHHHHHHHHHHhCCCC-chhHHHHHHHHHHhCCChHHHHHHH----
Q 003584 223 FRDMRVEGVESNQFTFPSILTAC----AAVSARDFGAQVHGCILSSGFEA-NVYVQSALIDMYAKCGDLDSARRLL---- 293 (809)
Q Consensus 223 ~~~m~~~g~~p~~~t~~~ll~~~----~~~~~~~~a~~~~~~~~~~g~~~-~~~~~~~Li~~y~~~g~~~~A~~~f---- 293 (809)
|....+. -.|...-..++.++ .+....+.|+-++...+..-... ....|..+...=-+.|+........
T Consensus 230 yerAie~--~~~d~~~e~lfvaFA~fEe~qkE~ERar~iykyAld~~pk~raeeL~k~~~~fEKqfGd~~gIEd~Iv~KR 307 (677)
T KOG1915|consen 230 YERAIEF--LGDDEEAEILFVAFAEFEERQKEYERARFIYKYALDHIPKGRAEELYKKYTAFEKQFGDKEGIEDAIVGKR 307 (677)
T ss_pred HHHHHHH--hhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCcccHHHHHHHHHHHHHHhcchhhhHHHHhhhh
Confidence 8877643 12333333333443 35667888888888888764221 1445666665555666655443332
Q ss_pred ----hccCCC---CeeeHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCC-ccc------HHHH---HHHhhcCCChHHHH
Q 003584 294 ----EYSEID---NEVSWNSMIVGFARQGFHKEALSLFKKMHARDIKID-DFT------YPSV---LNCFASNIDLNNAK 356 (809)
Q Consensus 294 ----~~~~~~---~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~-~~t------~~~l---l~~~~~~~~~~~a~ 356 (809)
+.+... |-.+|-..+..--..|+.+...++|++.... ++|- ... |.-+ +-.-....+.+.++
T Consensus 308 k~qYE~~v~~np~nYDsWfdylrL~e~~g~~~~Ire~yErAIan-vpp~~ekr~W~RYIYLWinYalyeEle~ed~ertr 386 (677)
T KOG1915|consen 308 KFQYEKEVSKNPYNYDSWFDYLRLEESVGDKDRIRETYERAIAN-VPPASEKRYWRRYIYLWINYALYEELEAEDVERTR 386 (677)
T ss_pred hhHHHHHHHhCCCCchHHHHHHHHHHhcCCHHHHHHHHHHHHcc-CCchhHHHHHHHHHHHHHHHHHHHHHHhhhHHHHH
Confidence 222222 4456666777777778888888888888765 3332 111 1111 11112446667777
Q ss_pred HHHHHHHHhccCCchHHHHHHHHHHH----hcCCHHHHHHHHhhcCC--CCHhHHHHHHHHHHhcCCHHHHHHHHHHHhh
Q 003584 357 SVHSLIVKTGFEGYKFVNNALIDMYA----KQGNLDCAFMVFNLMQD--KDVISWTSLITGCAYHGSYEEALKYFSDMRI 430 (809)
Q Consensus 357 ~i~~~~~~~g~~~~~~~~~~li~~y~----~~g~~~~A~~~f~~~~~--~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~ 430 (809)
++++..++ =++...+++.-+=-+|+ ++.++..|++++..... |-.-++-..|..=.+.++++....++++..+
T Consensus 387 ~vyq~~l~-lIPHkkFtFaKiWlmyA~feIRq~~l~~ARkiLG~AIG~cPK~KlFk~YIelElqL~efDRcRkLYEkfle 465 (677)
T KOG1915|consen 387 QVYQACLD-LIPHKKFTFAKIWLMYAQFEIRQLNLTGARKILGNAIGKCPKDKLFKGYIELELQLREFDRCRKLYEKFLE 465 (677)
T ss_pred HHHHHHHh-hcCcccchHHHHHHHHHHHHHHHcccHHHHHHHHHHhccCCchhHHHHHHHHHHHHhhHHHHHHHHHHHHh
Confidence 77777666 23444444444433333 45666666666655443 3444555555555556666666666666655
Q ss_pred cCCccCHhHHHHHHHHHhcccchhHHHHHHHHHHHhC-CCCChhHHhHHHHHHHhcCCHHHHHHHHHhcC
Q 003584 431 SGICPDHVVVSSILSACAELTVLEFGQQVHAVFLKSG-GCSSLSVDNSLVLVYAKCGCINDANRVFDSMH 499 (809)
Q Consensus 431 ~g~~p~~~t~~~ll~a~~~~~~~~~a~~~~~~~~~~g-~~~~~~~~~~li~~y~k~g~~~~A~~~~~~~~ 499 (809)
-+ +-|..++......=..+|+.+.++.++..++... +.....++.+.|+.-..+|.++.|..+++.+.
T Consensus 466 ~~-Pe~c~~W~kyaElE~~LgdtdRaRaifelAi~qp~ldmpellwkaYIdFEi~~~E~ekaR~LYerlL 534 (677)
T KOG1915|consen 466 FS-PENCYAWSKYAELETSLGDTDRARAIFELAISQPALDMPELLWKAYIDFEIEEGEFEKARALYERLL 534 (677)
T ss_pred cC-hHhhHHHHHHHHHHHHhhhHHHHHHHHHHHhcCcccccHHHHHHHhhhhhhhcchHHHHHHHHHHHH
Confidence 43 2244455544444455555566666655555432 23334445555555555555555555555554
No 52
>TIGR02521 type_IV_pilW type IV pilus biogenesis/stability protein PilW. Members of this family are designated PilF in ref (PubMed:8973346) and PilW in ref (PubMed:15612916). This outer membrane protein is required both for pilus stability and for pilus function such as adherence to human cells. Members of this family contain copies of the TPR (tetratricopeptide repeat) domain.
Probab=99.28 E-value=3.5e-10 Score=112.85 Aligned_cols=198 Identities=14% Similarity=0.055 Sum_probs=165.3
Q ss_pred ChhHHhHHHHHHHhcCCHHHHHHHHHhcCC---CCeeechHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHH
Q 003584 471 SLSVDNSLVLVYAKCGCINDANRVFDSMHT---RDVITWTALIMGCAQNGKGKEALQFYDQMLARGTKPDYITFVGLLFA 547 (809)
Q Consensus 471 ~~~~~~~li~~y~k~g~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~pd~~t~~~ll~a 547 (809)
....+..+...|.+.|++++|.+.|++..+ .+...|..+...|...|++++|.+.|++..+.. +.+...+..+...
T Consensus 30 ~~~~~~~la~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~-~~~~~~~~~~~~~ 108 (234)
T TIGR02521 30 AAKIRVQLALGYLEQGDLEVAKENLDKALEHDPDDYLAYLALALYYQQLGELEKAEDSFRRALTLN-PNNGDVLNNYGTF 108 (234)
T ss_pred HHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC-CCCHHHHHHHHHH
Confidence 355667788899999999999999997752 345677888889999999999999999998853 3345677788889
Q ss_pred HHccCCHHHHHHHHHHhHHhhCCCCChHHHHHHHHHHhhcCCHHHHHHHHHhCcC-CC-CHHHHHHHHHHHHhcCChhHH
Q 003584 548 CSHAGLAENARWYFESMDKVYGIKPGPDHYACMIDLLGRSGKLIEAKALLDQMVG-EP-DATVWKALLSACRVHGDLELG 625 (809)
Q Consensus 548 ~~~~g~~~~a~~~~~~m~~~~~~~p~~~~~~~li~~~~~~g~~~eA~~~~~~m~~-~p-~~~~~~~ll~a~~~~g~~~~A 625 (809)
+...|++++|.+.++..............+..+...+.+.|++++|.+.+++... .| +...|..+...+...|++++|
T Consensus 109 ~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A 188 (234)
T TIGR02521 109 LCQQGKYEQAMQQFEQAIEDPLYPQPARSLENAGLCALKAGDFDKAEKYLTRALQIDPQRPESLLELAELYYLRGQYKDA 188 (234)
T ss_pred HHHcccHHHHHHHHHHHHhccccccchHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcCChHHHHHHHHHHHHcCCHHHH
Confidence 9999999999999999876422233456677888999999999999999988764 23 456888999999999999999
Q ss_pred HHHHHHHhccCCCCCccHHhHhhhhhhcCChhHHHHHHHHHHhC
Q 003584 626 ERAANNLFELEPMNAMPYVQLSNMYSTAGKWEDAARVRKLMKSR 669 (809)
Q Consensus 626 ~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~ 669 (809)
...++++++..|.++..+..++.++...|++++|..+.+.+...
T Consensus 189 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~ 232 (234)
T TIGR02521 189 RAYLERYQQTYNQTAESLWLGIRIARALGDVAAAQRYGAQLQKL 232 (234)
T ss_pred HHHHHHHHHhCCCCHHHHHHHHHHHHHHhhHHHHHHHHHHHHhh
Confidence 99999999998888888889999999999999999998887643
No 53
>KOG2047 consensus mRNA splicing factor [RNA processing and modification]
Probab=99.24 E-value=4.5e-06 Score=87.96 Aligned_cols=308 Identities=14% Similarity=0.159 Sum_probs=181.7
Q ss_pred cchHHHHHHHHHccCChhHHHHHhhhCCC-----CCcchHHHHHHHHHcCCCchhHHHHHHHHHHcCCCCCcccHHHHHH
Q 003584 67 GFTWNTMIAAYANSGRLREAKKLFNETPF-----KNFFTWSSLIYGYSNYGLDIEAFELFWQMQLEGYRPSQYTLDNVLR 141 (809)
Q Consensus 67 ~~~~~~li~~~~~~g~~~~A~~~f~~~~~-----~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~ 141 (809)
+.+|-.-+..+.++|++..-++.|++.-. .....|...+.-.-..+.++-++.+|++-++ +.|.. -.--|.
T Consensus 102 pRIwl~Ylq~l~~Q~~iT~tR~tfdrALraLpvtqH~rIW~lyl~Fv~~~~lPets~rvyrRYLk--~~P~~--~eeyie 177 (835)
T KOG2047|consen 102 PRIWLDYLQFLIKQGLITRTRRTFDRALRALPVTQHDRIWDLYLKFVESHGLPETSIRVYRRYLK--VAPEA--REEYIE 177 (835)
T ss_pred CHHHHHHHHHHHhcchHHHHHHHHHHHHHhCchHhhccchHHHHHHHHhCCChHHHHHHHHHHHh--cCHHH--HHHHHH
Confidence 55787888888899999999999986422 2346788888888889999999999999887 33433 566677
Q ss_pred HhhcCCCchHHHHHHHHHHHhC------CCCchHHHHHHHHhhhcCCCh---hHHHHHhhhCCCC-CC--cccHHHHHHH
Q 003584 142 LCSLKGLLQRGEQFHGYAIKTC------FDLNAFVVTGLVDMYAKCKCI---FEAEYLFKMFPDG-KN--HVAWTTMITG 209 (809)
Q Consensus 142 ~~~~~~~~~~a~~~~~~~~~~g------~~~~~~~~~~li~~y~~~g~~---~~A~~~f~~~~~~-~~--~~~~~~li~~ 209 (809)
-++..+++.+|.+.+..++... ...+-..|..+-+..++..+. -....++..+... +| ...|++|..-
T Consensus 178 ~L~~~d~~~eaa~~la~vln~d~f~sk~gkSn~qlw~elcdlis~~p~~~~slnvdaiiR~gi~rftDq~g~Lw~SLAdY 257 (835)
T KOG2047|consen 178 YLAKSDRLDEAAQRLATVLNQDEFVSKKGKSNHQLWLELCDLISQNPDKVQSLNVDAIIRGGIRRFTDQLGFLWCSLADY 257 (835)
T ss_pred HHHhccchHHHHHHHHHhcCchhhhhhcccchhhHHHHHHHHHHhCcchhcccCHHHHHHhhcccCcHHHHHHHHHHHHH
Confidence 7788889998888887776332 245556677776666655332 2233444444331 23 3479999999
Q ss_pred HhhCCChHHHHHHHHHHHHCCCCCCcchHHHHHHHHhccCChHHHHHHHHHHH-HhCCCCchhHHHHHHHHHHhCCChHH
Q 003584 210 YSQNGYGFKAIECFRDMRVEGVESNQFTFPSILTACAAVSARDFGAQVHGCIL-SSGFEANVYVQSALIDMYAKCGDLDS 288 (809)
Q Consensus 210 ~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~-~~g~~~~~~~~~~Li~~y~~~g~~~~ 288 (809)
|.+.|.++.|.++|++-.+. .....-|+.+.++|+.......+..+- ... +.|-..+.. +++-
T Consensus 258 YIr~g~~ekarDvyeeai~~--v~tvrDFt~ifd~Ya~FEE~~~~~~me-~a~~~~~n~ed~~-------------dl~~ 321 (835)
T KOG2047|consen 258 YIRSGLFEKARDVYEEAIQT--VMTVRDFTQIFDAYAQFEESCVAAKME-LADEESGNEEDDV-------------DLEL 321 (835)
T ss_pred HHHhhhhHHHHHHHHHHHHh--heehhhHHHHHHHHHHHHHHHHHHHHh-hhhhcccChhhhh-------------hHHH
Confidence 99999999999999887654 234455677777766533222222211 000 111111111 1222
Q ss_pred HHHHHhccC---------------CCCeeeHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCc------ccHHHHHHHhh
Q 003584 289 ARRLLEYSE---------------IDNEVSWNSMIVGFARQGFHKEALSLFKKMHARDIKIDD------FTYPSVLNCFA 347 (809)
Q Consensus 289 A~~~f~~~~---------------~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~------~t~~~ll~~~~ 347 (809)
...-|+.+. ..++..|..-+.. ..|+..+-...|.+..+. +.|.. ..+..+.+.|-
T Consensus 322 ~~a~~e~lm~rr~~~lNsVlLRQn~~nV~eW~kRV~l--~e~~~~~~i~tyteAv~~-vdP~ka~Gs~~~Lw~~faklYe 398 (835)
T KOG2047|consen 322 HMARFESLMNRRPLLLNSVLLRQNPHNVEEWHKRVKL--YEGNAAEQINTYTEAVKT-VDPKKAVGSPGTLWVEFAKLYE 398 (835)
T ss_pred HHHHHHHHHhccchHHHHHHHhcCCccHHHHHhhhhh--hcCChHHHHHHHHHHHHc-cCcccCCCChhhHHHHHHHHHH
Confidence 222333222 1234444443333 346666667777776553 22222 12444455555
Q ss_pred cCCChHHHHHHHHHHHHhccCCc---hHHHHHHHHHHHhcCCHHHHHHHHhhc
Q 003584 348 SNIDLNNAKSVHSLIVKTGFEGY---KFVNNALIDMYAKQGNLDCAFMVFNLM 397 (809)
Q Consensus 348 ~~~~~~~a~~i~~~~~~~g~~~~---~~~~~~li~~y~~~g~~~~A~~~f~~~ 397 (809)
..|+++.|+.+|+...+..++.- ..+|-.-.++=.+..+++.|+++.+..
T Consensus 399 ~~~~l~~aRvifeka~~V~y~~v~dLa~vw~~waemElrh~~~~~Al~lm~~A 451 (835)
T KOG2047|consen 399 NNGDLDDARVIFEKATKVPYKTVEDLAEVWCAWAEMELRHENFEAALKLMRRA 451 (835)
T ss_pred hcCcHHHHHHHHHHhhcCCccchHHHHHHHHHHHHHHHhhhhHHHHHHHHHhh
Confidence 66666666666666655443322 234444445555555566666655543
No 54
>KOG0985 consensus Vesicle coat protein clathrin, heavy chain [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.23 E-value=1.8e-07 Score=102.40 Aligned_cols=159 Identities=17% Similarity=0.241 Sum_probs=126.5
Q ss_pred CCHHHHHHHHHhcCCCCeeechHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHhH
Q 003584 486 GCINDANRVFDSMHTRDVITWTALIMGCAQNGKGKEALQFYDQMLARGTKPDYITFVGLLFACSHAGLAENARWYFESMD 565 (809)
Q Consensus 486 g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~pd~~t~~~ll~a~~~~g~~~~a~~~~~~m~ 565 (809)
+.++.|.+.-++..+| ..|..+..+-.+.|...+|++-|-+ .-|...|..++.++++.|.+++-.+++....
T Consensus 1089 ~~ldRA~efAe~~n~p--~vWsqlakAQL~~~~v~dAieSyik------adDps~y~eVi~~a~~~~~~edLv~yL~MaR 1160 (1666)
T KOG0985|consen 1089 GSLDRAYEFAERCNEP--AVWSQLAKAQLQGGLVKDAIESYIK------ADDPSNYLEVIDVASRTGKYEDLVKYLLMAR 1160 (1666)
T ss_pred hhHHHHHHHHHhhCCh--HHHHHHHHHHHhcCchHHHHHHHHh------cCCcHHHHHHHHHHHhcCcHHHHHHHHHHHH
Confidence 4445555554444433 4699999999999999999988754 2466789999999999999999999997666
Q ss_pred HhhCCCCChHHHHHHHHHHhhcCCHHHHHHHHHhCcCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHhccCCCCCccHHh
Q 003584 566 KVYGIKPGPDHYACMIDLLGRSGKLIEAKALLDQMVGEPDATVWKALLSACRVHGDLELGERAANNLFELEPMNAMPYVQ 645 (809)
Q Consensus 566 ~~~~~~p~~~~~~~li~~~~~~g~~~eA~~~~~~m~~~p~~~~~~~ll~a~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~ 645 (809)
++ .-+|..+ +.|+-+|++.+++.|-.+++. -|+..-......-|...|.++.|.-+|. +.+.|..
T Consensus 1161 kk-~~E~~id--~eLi~AyAkt~rl~elE~fi~----gpN~A~i~~vGdrcf~~~~y~aAkl~y~--------~vSN~a~ 1225 (1666)
T KOG0985|consen 1161 KK-VREPYID--SELIFAYAKTNRLTELEEFIA----GPNVANIQQVGDRCFEEKMYEAAKLLYS--------NVSNFAK 1225 (1666)
T ss_pred Hh-hcCccch--HHHHHHHHHhchHHHHHHHhc----CCCchhHHHHhHHHhhhhhhHHHHHHHH--------HhhhHHH
Confidence 55 6666664 468899999999999888763 4788888888999999999999988887 4567888
Q ss_pred HhhhhhhcCChhHHHHHHHHHH
Q 003584 646 LSNMYSTAGKWEDAARVRKLMK 667 (809)
Q Consensus 646 l~~~~~~~g~~~~A~~~~~~m~ 667 (809)
|+..+...|.+..|...-++..
T Consensus 1226 La~TLV~LgeyQ~AVD~aRKAn 1247 (1666)
T KOG0985|consen 1226 LASTLVYLGEYQGAVDAARKAN 1247 (1666)
T ss_pred HHHHHHHHHHHHHHHHHhhhcc
Confidence 8888899999988877665543
No 55
>PF13041 PPR_2: PPR repeat family
Probab=99.22 E-value=1.8e-11 Score=87.80 Aligned_cols=50 Identities=22% Similarity=0.555 Sum_probs=47.4
Q ss_pred CCcccHHHHHHHHhhCCChHHHHHHHHHHHHCCCCCCcchHHHHHHHHhc
Q 003584 198 KNHVAWTTMITGYSQNGYGFKAIECFRDMRVEGVESNQFTFPSILTACAA 247 (809)
Q Consensus 198 ~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~~~~~ 247 (809)
||+++||++|.+|++.|++++|+++|++|.+.|++||..||+++|++|++
T Consensus 1 P~~~~yn~li~~~~~~~~~~~a~~l~~~M~~~g~~P~~~Ty~~li~~~~k 50 (50)
T PF13041_consen 1 PDVVTYNTLISGYCKAGKFEEALKLFKEMKKRGIKPDSYTYNILINGLCK 50 (50)
T ss_pred CchHHHHHHHHHHHHCcCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHcC
Confidence 78999999999999999999999999999999999999999999999874
No 56
>COG2956 Predicted N-acetylglucosaminyl transferase [Carbohydrate transport and metabolism]
Probab=99.21 E-value=2.6e-08 Score=96.04 Aligned_cols=296 Identities=17% Similarity=0.167 Sum_probs=186.5
Q ss_pred cCChhHHHHHHHHHHHCCCCCCcccHHHHHHHhhcCCChHHHHHHHHHHHHhccCC---chHHHHHHHHHHHhcCCHHHH
Q 003584 314 QGFHKEALSLFKKMHARDIKIDDFTYPSVLNCFASNIDLNNAKSVHSLIVKTGFEG---YKFVNNALIDMYAKQGNLDCA 390 (809)
Q Consensus 314 ~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~i~~~~~~~g~~~---~~~~~~~li~~y~~~g~~~~A 390 (809)
+.+.++|.++|-+|.+... -+..+-.++-+.+.+.|..+.|..+|+.+.++.--+ -..+.-.|..-|.+.|-+|.|
T Consensus 48 s~Q~dKAvdlF~e~l~~d~-~t~e~~ltLGnLfRsRGEvDRAIRiHQ~L~~spdlT~~qr~lAl~qL~~Dym~aGl~DRA 126 (389)
T COG2956 48 SNQPDKAVDLFLEMLQEDP-ETFEAHLTLGNLFRSRGEVDRAIRIHQTLLESPDLTFEQRLLALQQLGRDYMAAGLLDRA 126 (389)
T ss_pred hcCcchHHHHHHHHHhcCc-hhhHHHHHHHHHHHhcchHHHHHHHHHHHhcCCCCchHHHHHHHHHHHHHHHHhhhhhHH
Confidence 5677888888888876421 122334566667778888888888888877652211 122344567778889999999
Q ss_pred HHHHhhcCCCC---HhHHHHHHHHHHhcCCHHHHHHHHHHHhhcCCccCHhHHHHHHHHHhcccchhHHHHHHHHHHHhC
Q 003584 391 FMVFNLMQDKD---VISWTSLITGCAYHGSYEEALKYFSDMRISGICPDHVVVSSILSACAELTVLEFGQQVHAVFLKSG 467 (809)
Q Consensus 391 ~~~f~~~~~~~---~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~~~~~~a~~~~~~~~~~g 467 (809)
+.+|..+.+.+ ......|+..|-+..+|++|++.-+++.+.+-.+..+-..
T Consensus 127 E~~f~~L~de~efa~~AlqqLl~IYQ~treW~KAId~A~~L~k~~~q~~~~eIA-------------------------- 180 (389)
T COG2956 127 EDIFNQLVDEGEFAEGALQQLLNIYQATREWEKAIDVAERLVKLGGQTYRVEIA-------------------------- 180 (389)
T ss_pred HHHHHHHhcchhhhHHHHHHHHHHHHHhhHHHHHHHHHHHHHHcCCccchhHHH--------------------------
Confidence 99999887743 3456678888999999999999988888765444332221
Q ss_pred CCCChhHHhHHHHHHHhcCCHHHHHHHHHhcCCCC---eeechHHHHHHHhcCChHHHHHHHHHHHHCCCCCCH--HHHH
Q 003584 468 GCSSLSVDNSLVLVYAKCGCINDANRVFDSMHTRD---VITWTALIMGCAQNGKGKEALQFYDQMLARGTKPDY--ITFV 542 (809)
Q Consensus 468 ~~~~~~~~~~li~~y~k~g~~~~A~~~~~~~~~~~---~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~pd~--~t~~ 542 (809)
..|.-|...+.-..+++.|..++.+..+-| +..--.+...+...|++..|++.++...+. .|+. .+..
T Consensus 181 -----qfyCELAq~~~~~~~~d~A~~~l~kAlqa~~~cvRAsi~lG~v~~~~g~y~~AV~~~e~v~eQ--n~~yl~evl~ 253 (389)
T COG2956 181 -----QFYCELAQQALASSDVDRARELLKKALQADKKCVRASIILGRVELAKGDYQKAVEALERVLEQ--NPEYLSEVLE 253 (389)
T ss_pred -----HHHHHHHHHHhhhhhHHHHHHHHHHHHhhCccceehhhhhhHHHHhccchHHHHHHHHHHHHh--ChHHHHHHHH
Confidence 112223334444567777888887766332 233333455677888889999888888886 3444 4667
Q ss_pred HHHHHHHccCCHHHHHHHHHHhHHhhCCCCChHHHHHHHHHHhhcCCHHHHHHHH-HhCcCCCCHHHHHHHHHHHHhcCC
Q 003584 543 GLLFACSHAGLAENARWYFESMDKVYGIKPGPDHYACMIDLLGRSGKLIEAKALL-DQMVGEPDATVWKALLSACRVHGD 621 (809)
Q Consensus 543 ~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~~~~~~~li~~~~~~g~~~eA~~~~-~~m~~~p~~~~~~~ll~a~~~~g~ 621 (809)
.|..+|.+.|+.+++...+.++.+. .+....-..|.+......-.++|...+ +....+|+...+.-|+..-...
T Consensus 254 ~L~~~Y~~lg~~~~~~~fL~~~~~~---~~g~~~~l~l~~lie~~~G~~~Aq~~l~~Ql~r~Pt~~gf~rl~~~~l~d-- 328 (389)
T COG2956 254 MLYECYAQLGKPAEGLNFLRRAMET---NTGADAELMLADLIELQEGIDAAQAYLTRQLRRKPTMRGFHRLMDYHLAD-- 328 (389)
T ss_pred HHHHHHHHhCCHHHHHHHHHHHHHc---cCCccHHHHHHHHHHHhhChHHHHHHHHHHHhhCCcHHHHHHHHHhhhcc--
Confidence 7888888888888888888777643 334433444444444444444555443 3344456666555444322111
Q ss_pred hhHHHHHHHHHhccCCCCCccHHhHhhhhhhcCChhHHHHHHHHHHhCCCccCCce
Q 003584 622 LELGERAANNLFELEPMNAMPYVQLSNMYSTAGKWEDAARVRKLMKSRGIRKEPGC 677 (809)
Q Consensus 622 ~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~ 677 (809)
+..|++.+...+++.|....++..|.+
T Consensus 329 -----------------------------aeeg~~k~sL~~lr~mvge~l~~~~~Y 355 (389)
T COG2956 329 -----------------------------AEEGRAKESLDLLRDMVGEQLRRKPRY 355 (389)
T ss_pred -----------------------------ccccchhhhHHHHHHHHHHHHhhcCCc
Confidence 123556677777777776666655544
No 57
>KOG0547 consensus Translocase of outer mitochondrial membrane complex, subunit TOM70/TOM72 [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.19 E-value=6.2e-08 Score=98.46 Aligned_cols=217 Identities=10% Similarity=0.003 Sum_probs=160.9
Q ss_pred HhcCCHHHHHHHHHHHhhcCCccCHhHHHHHHHHHhcccchhHHHHHHHHHHHhCCCCChhHHhHHHHHHHhcCCHHHHH
Q 003584 413 AYHGSYEEALKYFSDMRISGICPDHVVVSSILSACAELTVLEFGQQVHAVFLKSGGCSSLSVDNSLVLVYAKCGCINDAN 492 (809)
Q Consensus 413 ~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~y~k~g~~~~A~ 492 (809)
.-.|+...|.+.|+........++.. |.-+-.+|....+.++..+.|..+.+.+ +.++.+|-.-..++.-.+++++|.
T Consensus 337 fL~g~~~~a~~d~~~~I~l~~~~~~l-yI~~a~~y~d~~~~~~~~~~F~~A~~ld-p~n~dvYyHRgQm~flL~q~e~A~ 414 (606)
T KOG0547|consen 337 FLKGDSLGAQEDFDAAIKLDPAFNSL-YIKRAAAYADENQSEKMWKDFNKAEDLD-PENPDVYYHRGQMRFLLQQYEEAI 414 (606)
T ss_pred hhcCCchhhhhhHHHHHhcCcccchH-HHHHHHHHhhhhccHHHHHHHHHHHhcC-CCCCchhHhHHHHHHHHHHHHHHH
Confidence 34566777777777776654333332 5455556777777777777777777765 556677777788888899999999
Q ss_pred HHHHhcCC---CCeeechHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHhHHhhC
Q 003584 493 RVFDSMHT---RDVITWTALIMGCAQNGKGKEALQFYDQMLARGTKPDYITFVGLLFACSHAGLAENARWYFESMDKVYG 569 (809)
Q Consensus 493 ~~~~~~~~---~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~pd~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~ 569 (809)
.-|++... .++..|-.+..+..+.+++++++..|++.++. ++.-...|+.....+...+++++|.+.|+... .
T Consensus 415 aDF~Kai~L~pe~~~~~iQl~~a~Yr~~k~~~~m~~Fee~kkk-FP~~~Evy~~fAeiLtDqqqFd~A~k~YD~ai---~ 490 (606)
T KOG0547|consen 415 ADFQKAISLDPENAYAYIQLCCALYRQHKIAESMKTFEEAKKK-FPNCPEVYNLFAEILTDQQQFDKAVKQYDKAI---E 490 (606)
T ss_pred HHHHHHhhcChhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHh-CCCCchHHHHHHHHHhhHHhHHHHHHHHHHHH---h
Confidence 99998874 35567777777777888999999999999986 44445688889999999999999999999876 3
Q ss_pred CCCC-------hH--HHHHHHHHHhhcCCHHHHHHHHHhCcC-CC-CHHHHHHHHHHHHhcCChhHHHHHHHHHhccC
Q 003584 570 IKPG-------PD--HYACMIDLLGRSGKLIEAKALLDQMVG-EP-DATVWKALLSACRVHGDLELGERAANNLFELE 636 (809)
Q Consensus 570 ~~p~-------~~--~~~~li~~~~~~g~~~eA~~~~~~m~~-~p-~~~~~~~ll~a~~~~g~~~~A~~~~~~~~~~~ 636 (809)
+.|+ .. +.-.++- +.-.+++..|.+++++... .| ....+-+|...-.++|+.++|+++|++...+-
T Consensus 491 LE~~~~~~~v~~~plV~Ka~l~-~qwk~d~~~a~~Ll~KA~e~Dpkce~A~~tlaq~~lQ~~~i~eAielFEksa~lA 567 (606)
T KOG0547|consen 491 LEPREHLIIVNAAPLVHKALLV-LQWKEDINQAENLLRKAIELDPKCEQAYETLAQFELQRGKIDEAIELFEKSAQLA 567 (606)
T ss_pred hccccccccccchhhhhhhHhh-hchhhhHHHHHHHHHHHHccCchHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHH
Confidence 4444 11 1112221 2234899999999999885 34 34589999999999999999999999887654
No 58
>PF13041 PPR_2: PPR repeat family
Probab=99.19 E-value=3.4e-11 Score=86.30 Aligned_cols=50 Identities=38% Similarity=0.592 Sum_probs=47.0
Q ss_pred CCeeechHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHc
Q 003584 501 RDVITWTALIMGCAQNGKGKEALQFYDQMLARGTKPDYITFVGLLFACSH 550 (809)
Q Consensus 501 ~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~pd~~t~~~ll~a~~~ 550 (809)
||+++||++|.+|++.|++++|.++|++|.+.|++||..||+.++++|++
T Consensus 1 P~~~~yn~li~~~~~~~~~~~a~~l~~~M~~~g~~P~~~Ty~~li~~~~k 50 (50)
T PF13041_consen 1 PDVVTYNTLISGYCKAGKFEEALKLFKEMKKRGIKPDSYTYNILINGLCK 50 (50)
T ss_pred CchHHHHHHHHHHHHCcCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHcC
Confidence 78899999999999999999999999999999999999999999999874
No 59
>KOG3785 consensus Uncharacterized conserved protein [Function unknown]
Probab=99.19 E-value=1.8e-07 Score=91.06 Aligned_cols=169 Identities=13% Similarity=0.067 Sum_probs=109.6
Q ss_pred HHHHHHHHHhcCC-----CCeeechHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCCHHHHHHHHH
Q 003584 488 INDANRVFDSMHT-----RDVITWTALIMGCAQNGKGKEALQFYDQMLARGTKPDYITFVGLLFACSHAGLAENARWYFE 562 (809)
Q Consensus 488 ~~~A~~~~~~~~~-----~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~pd~~t~~~ll~a~~~~g~~~~a~~~~~ 562 (809)
+.-|.+.|+-... ..+.--.+|.+.+.-..++++.+..++....- +..|..--..+..|.+..|.+.+|.++|-
T Consensus 339 lKiAqqffqlVG~Sa~ecDTIpGRQsmAs~fFL~~qFddVl~YlnSi~sY-F~NdD~Fn~N~AQAk~atgny~eaEelf~ 417 (557)
T KOG3785|consen 339 LKIAQQFFQLVGESALECDTIPGRQSMASYFFLSFQFDDVLTYLNSIESY-FTNDDDFNLNLAQAKLATGNYVEAEELFI 417 (557)
T ss_pred HHHHHHHHHHhcccccccccccchHHHHHHHHHHHHHHHHHHHHHHHHHH-hcCcchhhhHHHHHHHHhcChHHHHHHHh
Confidence 4445555554431 12334456667777777788888887777664 23333333457788888899999998886
Q ss_pred HhHHhhCCCCChHHHH-HHHHHHhhcCCHHHHHHHHHhCcCCCCHHHHH-HHHHHHHhcCChhHHHHHHHHHhccCCCCC
Q 003584 563 SMDKVYGIKPGPDHYA-CMIDLLGRSGKLIEAKALLDQMVGEPDATVWK-ALLSACRVHGDLELGERAANNLFELEPMNA 640 (809)
Q Consensus 563 ~m~~~~~~~p~~~~~~-~li~~~~~~g~~~eA~~~~~~m~~~p~~~~~~-~ll~a~~~~g~~~~A~~~~~~~~~~~p~~~ 640 (809)
.+... .+ .+..+|. .|...|.++|+.+-|.+++-++..+.+..+.- .+.+-|.+.+.+--|-++|..+-.++|. +
T Consensus 418 ~is~~-~i-kn~~~Y~s~LArCyi~nkkP~lAW~~~lk~~t~~e~fsLLqlIAn~CYk~~eFyyaaKAFd~lE~lDP~-p 494 (557)
T KOG3785|consen 418 RISGP-EI-KNKILYKSMLARCYIRNKKPQLAWDMMLKTNTPSERFSLLQLIANDCYKANEFYYAAKAFDELEILDPT-P 494 (557)
T ss_pred hhcCh-hh-hhhHHHHHHHHHHHHhcCCchHHHHHHHhcCCchhHHHHHHHHHHHHHHHHHHHHHHHhhhHHHccCCC-c
Confidence 65421 22 3445555 45578899999999999998887544555443 4457788999998899999988888884 4
Q ss_pred ccHHhHhhhhhhcCChhHHHHHHHHHHhC
Q 003584 641 MPYVQLSNMYSTAGKWEDAARVRKLMKSR 669 (809)
Q Consensus 641 ~~~~~l~~~~~~~g~~~~A~~~~~~m~~~ 669 (809)
+.|. |+-.....+|..+...
T Consensus 495 EnWe---------GKRGACaG~f~~l~~~ 514 (557)
T KOG3785|consen 495 ENWE---------GKRGACAGLFRQLANH 514 (557)
T ss_pred cccC---------CccchHHHHHHHHHcC
Confidence 4332 3434445556555544
No 60
>KOG1840 consensus Kinesin light chain [Cytoskeleton]
Probab=99.19 E-value=2.9e-09 Score=113.74 Aligned_cols=230 Identities=20% Similarity=0.224 Sum_probs=170.4
Q ss_pred hHHHHHHHHHhcccchhHHHHHHHHHHHh-----CC-CCCh-hHHhHHHHHHHhcCCHHHHHHHHHhcCC-------C-C
Q 003584 438 VVVSSILSACAELTVLEFGQQVHAVFLKS-----GG-CSSL-SVDNSLVLVYAKCGCINDANRVFDSMHT-------R-D 502 (809)
Q Consensus 438 ~t~~~ll~a~~~~~~~~~a~~~~~~~~~~-----g~-~~~~-~~~~~li~~y~k~g~~~~A~~~~~~~~~-------~-~ 502 (809)
.|...+...|...|+++.|.+.++..++. |. .|.+ ...+.+..+|...+++++|..+|+++.. + +
T Consensus 200 ~~~~~La~~y~~~g~~e~A~~l~k~Al~~l~k~~G~~hl~va~~l~~~a~~y~~~~k~~eAv~ly~~AL~i~e~~~G~~h 279 (508)
T KOG1840|consen 200 RTLRNLAEMYAVQGRLEKAEPLCKQALRILEKTSGLKHLVVASMLNILALVYRSLGKYDEAVNLYEEALTIREEVFGEDH 279 (508)
T ss_pred HHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHccCccCHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHhcCCCC
Confidence 45555666777777777777777766553 21 1222 2234567788899999999988887751 1 1
Q ss_pred ---eeechHHHHHHHhcCChHHHHHHHHHHHH-----CCCCC-CHH-HHHHHHHHHHccCCHHHHHHHHHHhHHhhC--C
Q 003584 503 ---VITWTALIMGCAQNGKGKEALQFYDQMLA-----RGTKP-DYI-TFVGLLFACSHAGLAENARWYFESMDKVYG--I 570 (809)
Q Consensus 503 ---~~~~~~li~~~~~~g~~~~A~~l~~~m~~-----~g~~p-d~~-t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~--~ 570 (809)
..+++.|..+|...|++++|..++++..+ .|..+ +.. .++.+...|...+.+++|..+++...+.+. .
T Consensus 280 ~~va~~l~nLa~ly~~~GKf~EA~~~~e~Al~I~~~~~~~~~~~v~~~l~~~~~~~~~~~~~Eea~~l~q~al~i~~~~~ 359 (508)
T KOG1840|consen 280 PAVAATLNNLAVLYYKQGKFAEAEEYCERALEIYEKLLGASHPEVAAQLSELAAILQSMNEYEEAKKLLQKALKIYLDAP 359 (508)
T ss_pred HHHHHHHHHHHHHHhccCChHHHHHHHHHHHHHHHHhhccChHHHHHHHHHHHHHHHHhcchhHHHHHHHHHHHHHHhhc
Confidence 24677788889999999998888877654 23233 332 466777789999999999999987766544 2
Q ss_pred CCC----hHHHHHHHHHHhhcCCHHHHHHHHHhCcCC---------CC-HHHHHHHHHHHHhcCChhHHHHHHHHHhc--
Q 003584 571 KPG----PDHYACMIDLLGRSGKLIEAKALLDQMVGE---------PD-ATVWKALLSACRVHGDLELGERAANNLFE-- 634 (809)
Q Consensus 571 ~p~----~~~~~~li~~~~~~g~~~eA~~~~~~m~~~---------p~-~~~~~~ll~a~~~~g~~~~A~~~~~~~~~-- 634 (809)
.++ ..+|+.|..+|...|+++||.++++++... +. ...++.|..+|.+.++.++|.++|++...
T Consensus 360 g~~~~~~a~~~~nl~~l~~~~gk~~ea~~~~k~ai~~~~~~~~~~~~~~~~~l~~la~~~~~~k~~~~a~~l~~~~~~i~ 439 (508)
T KOG1840|consen 360 GEDNVNLAKIYANLAELYLKMGKYKEAEELYKKAIQILRELLGKKDYGVGKPLNQLAEAYEELKKYEEAEQLFEEAKDIM 439 (508)
T ss_pred cccchHHHHHHHHHHHHHHHhcchhHHHHHHHHHHHHHHhcccCcChhhhHHHHHHHHHHHHhcccchHHHHHHHHHHHH
Confidence 222 368999999999999999999999988731 22 34678899999999999999999987654
Q ss_pred --cCCCC---CccHHhHhhhhhhcCChhHHHHHHHHHH
Q 003584 635 --LEPMN---AMPYVQLSNMYSTAGKWEDAARVRKLMK 667 (809)
Q Consensus 635 --~~p~~---~~~~~~l~~~~~~~g~~~~A~~~~~~m~ 667 (809)
..|++ ..+|..|+.+|...|++++|.++.+...
T Consensus 440 ~~~g~~~~~~~~~~~nL~~~Y~~~g~~e~a~~~~~~~~ 477 (508)
T KOG1840|consen 440 KLCGPDHPDVTYTYLNLAALYRAQGNYEAAEELEEKVL 477 (508)
T ss_pred HHhCCCCCchHHHHHHHHHHHHHcccHHHHHHHHHHHH
Confidence 34544 4568899999999999999999988875
No 61
>COG3071 HemY Uncharacterized enzyme of heme biosynthesis [Coenzyme metabolism]
Probab=99.18 E-value=3.5e-08 Score=98.31 Aligned_cols=278 Identities=14% Similarity=0.082 Sum_probs=173.2
Q ss_pred cCChhHHHHHHHHHHHCCCCCCcccHHHHHHHhhcCCChHHHHHHHHHHHHhccCCchHHHHHHHHHHHhcCCHHHHHHH
Q 003584 314 QGFHKEALSLFKKMHARDIKIDDFTYPSVLNCFASNIDLNNAKSVHSLIVKTGFEGYKFVNNALIDMYAKQGNLDCAFMV 393 (809)
Q Consensus 314 ~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~i~~~~~~~g~~~~~~~~~~li~~y~~~g~~~~A~~~ 393 (809)
.|++.+|.++..+-.+.+..| ...|..-..+.-..|+.+.+-..+.++.+.--.++..+.-+........|+++.|..-
T Consensus 97 eG~~~qAEkl~~rnae~~e~p-~l~~l~aA~AA~qrgd~~~an~yL~eaae~~~~~~l~v~ltrarlll~~~d~~aA~~~ 175 (400)
T COG3071 97 EGDFQQAEKLLRRNAEHGEQP-VLAYLLAAEAAQQRGDEDRANRYLAEAAELAGDDTLAVELTRARLLLNRRDYPAAREN 175 (400)
T ss_pred cCcHHHHHHHHHHhhhcCcch-HHHHHHHHHHHHhcccHHHHHHHHHHHhccCCCchHHHHHHHHHHHHhCCCchhHHHH
Confidence 466777777766655554333 2334445556666777777777777776664456666777777778888888888877
Q ss_pred HhhcCC---CCHhHHHHHHHHHHhcCCHHHHHHHHHHHhhcCCccCHh-------HHHHHHHHHhcccchhHHHHHHHHH
Q 003584 394 FNLMQD---KDVISWTSLITGCAYHGSYEEALKYFSDMRISGICPDHV-------VVSSILSACAELTVLEFGQQVHAVF 463 (809)
Q Consensus 394 f~~~~~---~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~-------t~~~ll~a~~~~~~~~~a~~~~~~~ 463 (809)
.++..+ .++........+|.+.|++.+...++.+|.+.|+--|+. ++..+++-+...+..+.
T Consensus 176 v~~ll~~~pr~~~vlrLa~r~y~~~g~~~~ll~~l~~L~ka~~l~~~e~~~le~~a~~glL~q~~~~~~~~g-------- 247 (400)
T COG3071 176 VDQLLEMTPRHPEVLRLALRAYIRLGAWQALLAILPKLRKAGLLSDEEAARLEQQAWEGLLQQARDDNGSEG-------- 247 (400)
T ss_pred HHHHHHhCcCChHHHHHHHHHHHHhccHHHHHHHHHHHHHccCCChHHHHHHHHHHHHHHHHHHhccccchH--------
Confidence 776543 577788888899999999999999999999887655432 33333333333222222
Q ss_pred HHhCCCCChhHHhHHHHHHHhcCCHHHHHHHHHhcC---CCCeeechHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHH
Q 003584 464 LKSGGCSSLSVDNSLVLVYAKCGCINDANRVFDSMH---TRDVITWTALIMGCAQNGKGKEALQFYDQMLARGTKPDYIT 540 (809)
Q Consensus 464 ~~~g~~~~~~~~~~li~~y~k~g~~~~A~~~~~~~~---~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~pd~~t 540 (809)
-...++..+ +.++..-.+++.-+.+.|+.++|.++.++..+.+..|+..
T Consensus 248 ---------------------------L~~~W~~~pr~lr~~p~l~~~~a~~li~l~~~~~A~~~i~~~Lk~~~D~~L~- 299 (400)
T COG3071 248 ---------------------------LKTWWKNQPRKLRNDPELVVAYAERLIRLGDHDEAQEIIEDALKRQWDPRLC- 299 (400)
T ss_pred ---------------------------HHHHHHhccHHhhcChhHHHHHHHHHHHcCChHHHHHHHHHHHHhccChhHH-
Confidence 222333333 2233344455555666677777777776666666555522
Q ss_pred HHHHHHHHHccCCHHHHHHHHHHhHHhhCCCCChHHHHHHHHHHhhcCCHHHHHHHHHhCcC-CCCHHHHHHHHHHHHhc
Q 003584 541 FVGLLFACSHAGLAENARWYFESMDKVYGIKPGPDHYACMIDLLGRSGKLIEAKALLDQMVG-EPDATVWKALLSACRVH 619 (809)
Q Consensus 541 ~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~~~~~~~li~~~~~~g~~~eA~~~~~~m~~-~p~~~~~~~ll~a~~~~ 619 (809)
.+-.+.+.++.+.-++..+...+.++-.| ..+.+|..+|.+.+.+.+|.+.|+.... .|+...|+-+..++.+.
T Consensus 300 ---~~~~~l~~~d~~~l~k~~e~~l~~h~~~p--~L~~tLG~L~~k~~~w~kA~~~leaAl~~~~s~~~~~~la~~~~~~ 374 (400)
T COG3071 300 ---RLIPRLRPGDPEPLIKAAEKWLKQHPEDP--LLLSTLGRLALKNKLWGKASEALEAALKLRPSASDYAELADALDQL 374 (400)
T ss_pred ---HHHhhcCCCCchHHHHHHHHHHHhCCCCh--hHHHHHHHHHHHhhHHHHHHHHHHHHHhcCCChhhHHHHHHHHHHc
Confidence 22234455565555555555555444444 4566666677777777777777765553 46666777777777777
Q ss_pred CChhHHHHHHHHHh
Q 003584 620 GDLELGERAANNLF 633 (809)
Q Consensus 620 g~~~~A~~~~~~~~ 633 (809)
|+.+.|.+..++.+
T Consensus 375 g~~~~A~~~r~e~L 388 (400)
T COG3071 375 GEPEEAEQVRREAL 388 (400)
T ss_pred CChHHHHHHHHHHH
Confidence 77777776666655
No 62
>KOG4162 consensus Predicted calmodulin-binding protein [Signal transduction mechanisms]
Probab=99.16 E-value=2.2e-07 Score=99.86 Aligned_cols=442 Identities=17% Similarity=0.100 Sum_probs=247.4
Q ss_pred CCCCchHHHHHHHHhhhcCCChhHHHHHhhhCCCC--CCcccHHHHHHHHhhCCChHHHHHHHHHHHHCCCCCCcch-HH
Q 003584 163 CFDLNAFVVTGLVDMYAKCKCIFEAEYLFKMFPDG--KNHVAWTTMITGYSQNGYGFKAIECFRDMRVEGVESNQFT-FP 239 (809)
Q Consensus 163 g~~~~~~~~~~li~~y~~~g~~~~A~~~f~~~~~~--~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t-~~ 239 (809)
.+..|..+|..|.-+..++|+++.+-+.|++.... .....|+.+-..|.-.|.-..|+.+.+.-....-.|+..+ +.
T Consensus 318 ~~qnd~ai~d~Lt~al~~~g~f~~lae~fE~~~~~~~~~~e~w~~~als~saag~~s~Av~ll~~~~~~~~~ps~~s~~L 397 (799)
T KOG4162|consen 318 KFQNDAAIFDHLTFALSRCGQFEVLAEQFEQALPFSFGEHERWYQLALSYSAAGSDSKAVNLLRESLKKSEQPSDISVLL 397 (799)
T ss_pred hhcchHHHHHHHHHHHHHHHHHHHHHHHHHHHhHhhhhhHHHHHHHHHHHHHhccchHHHHHHHhhcccccCCCcchHHH
Confidence 35678889999999999999999999999875431 3345799999999999999999999887654433344433 33
Q ss_pred HHHHHHh-ccCChHHHHHHHHHHHHhC--C--CCchhHHHHHHHHHHhCCChHHHHHHHhccCCCCeeeHHHHHHHHHhc
Q 003584 240 SILTACA-AVSARDFGAQVHGCILSSG--F--EANVYVQSALIDMYAKCGDLDSARRLLEYSEIDNEVSWNSMIVGFARQ 314 (809)
Q Consensus 240 ~ll~~~~-~~~~~~~a~~~~~~~~~~g--~--~~~~~~~~~Li~~y~~~g~~~~A~~~f~~~~~~~~~~~~~li~~~~~~ 314 (809)
..-+.|. +.+.+++|...-..++... . ......+-.+.-+|...- ....++. -+.
T Consensus 398 masklc~e~l~~~eegldYA~kai~~~~~~~~~l~~~~~l~lGi~y~~~A--------------~~a~~~s------eR~ 457 (799)
T KOG4162|consen 398 MASKLCIERLKLVEEGLDYAQKAISLLGGQRSHLKPRGYLFLGIAYGFQA--------------RQANLKS------ERD 457 (799)
T ss_pred HHHHHHHhchhhhhhHHHHHHHHHHHhhhhhhhhhhhHHHHHHHHHHhHh--------------hcCCChH------HHH
Confidence 3444444 5566777766666655521 0 011112222222221110 0000110 011
Q ss_pred CChhHHHHHHHHHHHCCC-CCCcccHHHHHHHhhcCCChHHHHHHHHHHHHhccCCchHHHHHHHHHHHhcCCHHHHHHH
Q 003584 315 GFHKEALSLFKKMHARDI-KIDDFTYPSVLNCFASNIDLNNAKSVHSLIVKTGFEGYKFVNNALIDMYAKQGNLDCAFMV 393 (809)
Q Consensus 315 g~~~~A~~~~~~m~~~g~-~p~~~t~~~ll~~~~~~~~~~~a~~i~~~~~~~g~~~~~~~~~~li~~y~~~g~~~~A~~~ 393 (809)
....++++.+++..+.+. .|+...|.++ -++..++++.|.+...+..+.+-..+...|..|.-.+...+++.+|+.+
T Consensus 458 ~~h~kslqale~av~~d~~dp~~if~lal--q~A~~R~l~sAl~~~~eaL~l~~~~~~~~whLLALvlSa~kr~~~Al~v 535 (799)
T KOG4162|consen 458 ALHKKSLQALEEAVQFDPTDPLVIFYLAL--QYAEQRQLTSALDYAREALALNRGDSAKAWHLLALVLSAQKRLKEALDV 535 (799)
T ss_pred HHHHHHHHHHHHHHhcCCCCchHHHHHHH--HHHHHHhHHHHHHHHHHHHHhcCCccHHHHHHHHHHHhhhhhhHHHHHH
Confidence 223566777777665432 2333333222 3444556666666666666665556666666666666666666666666
Q ss_pred HhhcCCC---CHhHHHHHHHHHHhcCCHHHHHHHHHHHhhc--CCccCHhHHHHHHHHHhcccchhHHHHHHHHHHHhCC
Q 003584 394 FNLMQDK---DVISWTSLITGCAYHGSYEEALKYFSDMRIS--GICPDHVVVSSILSACAELTVLEFGQQVHAVFLKSGG 468 (809)
Q Consensus 394 f~~~~~~---~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~--g~~p~~~t~~~ll~a~~~~~~~~~a~~~~~~~~~~g~ 468 (809)
.+...+. |-+....-+..-..-++.++|+.....+..- ...|-.
T Consensus 536 vd~al~E~~~N~~l~~~~~~i~~~~~~~e~~l~t~~~~L~~we~~~~~q------------------------------- 584 (799)
T KOG4162|consen 536 VDAALEEFGDNHVLMDGKIHIELTFNDREEALDTCIHKLALWEAEYGVQ------------------------------- 584 (799)
T ss_pred HHHHHHHhhhhhhhchhhhhhhhhcccHHHHHHHHHHHHHHHHhhhhHh-------------------------------
Confidence 5554331 1111111122222345555555555444321 000000
Q ss_pred CCChhHHhHHHHHHHhcCCHHHHHHHHHhcC-----CCCe-eechHHHHHHHhcCChHHHHHHHHHHHHCCCCC--CH--
Q 003584 469 CSSLSVDNSLVLVYAKCGCINDANRVFDSMH-----TRDV-ITWTALIMGCAQNGKGKEALQFYDQMLARGTKP--DY-- 538 (809)
Q Consensus 469 ~~~~~~~~~li~~y~k~g~~~~A~~~~~~~~-----~~~~-~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p--d~-- 538 (809)
..|+-....+.+..+. ..|. .++..+. +..+ -+.+.+..-.. |...-+.| +.
T Consensus 585 ---------------~~~~~g~~~~lk~~l~la~~q~~~a~s~sr~ls-~l~a-~~~~~~~se~~-Lp~s~~~~~~~~~~ 646 (799)
T KOG4162|consen 585 ---------------QTLDEGKLLRLKAGLHLALSQPTDAISTSRYLS-SLVA-SQLKSAGSELK-LPSSTVLPGPDSLW 646 (799)
T ss_pred ---------------hhhhhhhhhhhhcccccCcccccccchhhHHHH-HHHH-hhhhhcccccc-cCcccccCCCCchH
Confidence 0001111112222211 0111 1111111 1111 01110000000 11111122 21
Q ss_pred ----HHHHHHHHHHHccCCHHHHHHHHHHhHHhhCCCC-ChHHHHHHHHHHhhcCCHHHHHHHHHhCcC-CCCH-HHHHH
Q 003584 539 ----ITFVGLLFACSHAGLAENARWYFESMDKVYGIKP-GPDHYACMIDLLGRSGKLIEAKALLDQMVG-EPDA-TVWKA 611 (809)
Q Consensus 539 ----~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p-~~~~~~~li~~~~~~g~~~eA~~~~~~m~~-~p~~-~~~~~ 611 (809)
..+......+...+..++|...+.+.. ++.| ....|......+...|+++||.+.|..... .|+. .+..+
T Consensus 647 ~~~~~lwllaa~~~~~~~~~~~a~~CL~Ea~---~~~~l~~~~~~~~G~~~~~~~~~~EA~~af~~Al~ldP~hv~s~~A 723 (799)
T KOG4162|consen 647 YLLQKLWLLAADLFLLSGNDDEARSCLLEAS---KIDPLSASVYYLRGLLLEVKGQLEEAKEAFLVALALDPDHVPSMTA 723 (799)
T ss_pred HHHHHHHHHHHHHHHhcCCchHHHHHHHHHH---hcchhhHHHHHHhhHHHHHHHhhHHHHHHHHHHHhcCCCCcHHHHH
Confidence 123344455677778888877766654 3444 345666777888899999999999887764 5654 48899
Q ss_pred HHHHHHhcCChhHHHH--HHHHHhccCCCCCccHHhHhhhhhhcCChhHHHHHHHHHHhCCCccCCceeE
Q 003584 612 LLSACRVHGDLELGER--AANNLFELEPMNAMPYVQLSNMYSTAGKWEDAARVRKLMKSRGIRKEPGCSW 679 (809)
Q Consensus 612 ll~a~~~~g~~~~A~~--~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~s~ 679 (809)
+...+...|+-..|.. ++..+++++|.++.+|..|+.++.+.|+.++|.+.|.....-.- ..|..+|
T Consensus 724 la~~lle~G~~~la~~~~~L~dalr~dp~n~eaW~~LG~v~k~~Gd~~~Aaecf~aa~qLe~-S~PV~pF 792 (799)
T KOG4162|consen 724 LAELLLELGSPRLAEKRSLLSDALRLDPLNHEAWYYLGEVFKKLGDSKQAAECFQAALQLEE-SNPVLPF 792 (799)
T ss_pred HHHHHHHhCCcchHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHccchHHHHHHHHHHHhhcc-CCCcccc
Confidence 9999999999888888 99999999999999999999999999999999999998765432 2344444
No 63
>COG3071 HemY Uncharacterized enzyme of heme biosynthesis [Coenzyme metabolism]
Probab=99.14 E-value=7e-08 Score=96.18 Aligned_cols=285 Identities=13% Similarity=0.036 Sum_probs=188.5
Q ss_pred CCChHHHHHHHHHHHHCCCCCCcchHHHHHHHHhccCChHHHHHHHHHHHHhCCCCchhHHHHHHHHHHhCCChHHHHHH
Q 003584 213 NGYGFKAIECFRDMRVEGVESNQFTFPSILTACAAVSARDFGAQVHGCILSSGFEANVYVQSALIDMYAKCGDLDSARRL 292 (809)
Q Consensus 213 ~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~Li~~y~~~g~~~~A~~~ 292 (809)
.|++.+|.++..+-.+.+-.| ...|.....+.-..|+.+.+-.++.++.+.--.++..+.-+........|+.+.|..-
T Consensus 97 eG~~~qAEkl~~rnae~~e~p-~l~~l~aA~AA~qrgd~~~an~yL~eaae~~~~~~l~v~ltrarlll~~~d~~aA~~~ 175 (400)
T COG3071 97 EGDFQQAEKLLRRNAEHGEQP-VLAYLLAAEAAQQRGDEDRANRYLAEAAELAGDDTLAVELTRARLLLNRRDYPAAREN 175 (400)
T ss_pred cCcHHHHHHHHHHhhhcCcch-HHHHHHHHHHHHhcccHHHHHHHHHHHhccCCCchHHHHHHHHHHHHhCCCchhHHHH
Confidence 578888888887766665333 2335555566667788888888888887775467777778888888888888888776
Q ss_pred Hhc---cCCCCeeeHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCcccHHHHHHHhhcCCChHHHHHHHHHHHHhccCC
Q 003584 293 LEY---SEIDNEVSWNSMIVGFARQGFHKEALSLFKKMHARDIKIDDFTYPSVLNCFASNIDLNNAKSVHSLIVKTGFEG 369 (809)
Q Consensus 293 f~~---~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~i~~~~~~~g~~~ 369 (809)
.++ |..++..........|.+.|++.+...++.+|.+.|.--|+.. .++
T Consensus 176 v~~ll~~~pr~~~vlrLa~r~y~~~g~~~~ll~~l~~L~ka~~l~~~e~-----------------~~l----------- 227 (400)
T COG3071 176 VDQLLEMTPRHPEVLRLALRAYIRLGAWQALLAILPKLRKAGLLSDEEA-----------------ARL----------- 227 (400)
T ss_pred HHHHHHhCcCChHHHHHHHHHHHHhccHHHHHHHHHHHHHccCCChHHH-----------------HHH-----------
Confidence 654 4566777888888999999999999999999988775433221 111
Q ss_pred chHHHHHHHHHHHhcCCHHHHHHHHhhcCC---CCHhHHHHHHHHHHhcCCHHHHHHHHHHHhhcCCccCHhHHHHHHHH
Q 003584 370 YKFVNNALIDMYAKQGNLDCAFMVFNLMQD---KDVISWTSLITGCAYHGSYEEALKYFSDMRISGICPDHVVVSSILSA 446 (809)
Q Consensus 370 ~~~~~~~li~~y~~~g~~~~A~~~f~~~~~---~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a 446 (809)
...+++.+++-....+..+.-...++..+. .++..-.+++.-+.+.|+.++|.++..+..+.+..|+..+ +-.
T Consensus 228 e~~a~~glL~q~~~~~~~~gL~~~W~~~pr~lr~~p~l~~~~a~~li~l~~~~~A~~~i~~~Lk~~~D~~L~~----~~~ 303 (400)
T COG3071 228 EQQAWEGLLQQARDDNGSEGLKTWWKNQPRKLRNDPELVVAYAERLIRLGDHDEAQEIIEDALKRQWDPRLCR----LIP 303 (400)
T ss_pred HHHHHHHHHHHHhccccchHHHHHHHhccHHhhcChhHHHHHHHHHHHcCChHHHHHHHHHHHHhccChhHHH----HHh
Confidence 112344444444444444444556666654 3566667788888899999999999999888877777222 234
Q ss_pred HhcccchhHHHHHHHHHHHhCCCCChhHHhHHHHHHHhcCCHHHHHHHHHhcC--CCCeeechHHHHHHHhcCChHHHHH
Q 003584 447 CAELTVLEFGQQVHAVFLKSGGCSSLSVDNSLVLVYAKCGCINDANRVFDSMH--TRDVITWTALIMGCAQNGKGKEALQ 524 (809)
Q Consensus 447 ~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~y~k~g~~~~A~~~~~~~~--~~~~~~~~~li~~~~~~g~~~~A~~ 524 (809)
+.+.++.+.-.+..+...+.. +.++..+.+|...|.|.+.+.+|.+.|+... .|+..+|+-+..+|.+.|+..+|.+
T Consensus 304 ~l~~~d~~~l~k~~e~~l~~h-~~~p~L~~tLG~L~~k~~~w~kA~~~leaAl~~~~s~~~~~~la~~~~~~g~~~~A~~ 382 (400)
T COG3071 304 RLRPGDPEPLIKAAEKWLKQH-PEDPLLLSTLGRLALKNKLWGKASEALEAALKLRPSASDYAELADALDQLGEPEEAEQ 382 (400)
T ss_pred hcCCCCchHHHHHHHHHHHhC-CCChhHHHHHHHHHHHhhHHHHHHHHHHHHHhcCCChhhHHHHHHHHHHcCChHHHHH
Confidence 455566555555555444432 2333566667777777777777776666544 4566666666666666666666666
Q ss_pred HHHHHHH
Q 003584 525 FYDQMLA 531 (809)
Q Consensus 525 l~~~m~~ 531 (809)
.+++...
T Consensus 383 ~r~e~L~ 389 (400)
T COG3071 383 VRREALL 389 (400)
T ss_pred HHHHHHH
Confidence 6666543
No 64
>KOG2376 consensus Signal recognition particle, subunit Srp72 [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.12 E-value=5.8e-07 Score=93.81 Aligned_cols=432 Identities=15% Similarity=0.113 Sum_probs=263.8
Q ss_pred HHHHhhCCChHHHHHHHHHHHHCCCCCCcchHHHHHHHHhccCChHHHHHHHHHHHHhCCCCchhHHHH--HHHHHH--h
Q 003584 207 ITGYSQNGYGFKAIECFRDMRVEGVESNQFTFPSILTACAAVSARDFGAQVHGCILSSGFEANVYVQSA--LIDMYA--K 282 (809)
Q Consensus 207 i~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~--Li~~y~--~ 282 (809)
++-+..+|++++|+....++...+ +-|...+..-+-++...+.+++|..+... .+. ..+++. +=.+|| +
T Consensus 19 ln~~~~~~e~e~a~k~~~Kil~~~-pdd~~a~~cKvValIq~~ky~~ALk~ikk---~~~---~~~~~~~~fEKAYc~Yr 91 (652)
T KOG2376|consen 19 LNRHGKNGEYEEAVKTANKILSIV-PDDEDAIRCKVVALIQLDKYEDALKLIKK---NGA---LLVINSFFFEKAYCEYR 91 (652)
T ss_pred HHHhccchHHHHHHHHHHHHHhcC-CCcHhhHhhhHhhhhhhhHHHHHHHHHHh---cch---hhhcchhhHHHHHHHHH
Confidence 456778899999999999998765 34455677777788889999998855432 221 112222 345554 7
Q ss_pred CCChHHHHHHHhccCCCCeeeHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCc-ccHHHHHHHhhcCCChHHHHHHHHH
Q 003584 283 CGDLDSARRLLEYSEIDNEVSWNSMIVGFARQGFHKEALSLFKKMHARDIKIDD-FTYPSVLNCFASNIDLNNAKSVHSL 361 (809)
Q Consensus 283 ~g~~~~A~~~f~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~-~t~~~ll~~~~~~~~~~~a~~i~~~ 361 (809)
.+..|+|...++.....|......-...+.+.|++++|+++|+.+.+.+..--. ..-..++.+-.. ..+. .
T Consensus 92 lnk~Dealk~~~~~~~~~~~ll~L~AQvlYrl~~ydealdiY~~L~kn~~dd~d~~~r~nl~a~~a~----l~~~----~ 163 (652)
T KOG2376|consen 92 LNKLDEALKTLKGLDRLDDKLLELRAQVLYRLERYDEALDIYQHLAKNNSDDQDEERRANLLAVAAA----LQVQ----L 163 (652)
T ss_pred cccHHHHHHHHhcccccchHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCchHHHHHHHHHHHHHHh----hhHH----H
Confidence 799999999999665556556666677888999999999999999877543111 111111111111 0110 1
Q ss_pred HHHhccCCchHHHHH---HHHHHHhcCCHHHHHHHHhhc--------CCCCH----------hHHHHHHHHHHhcCCHHH
Q 003584 362 IVKTGFEGYKFVNNA---LIDMYAKQGNLDCAFMVFNLM--------QDKDV----------ISWTSLITGCAYHGSYEE 420 (809)
Q Consensus 362 ~~~~g~~~~~~~~~~---li~~y~~~g~~~~A~~~f~~~--------~~~~~----------~~~~~li~~~~~~g~~~~ 420 (809)
+......| ..+|.. ..-.+...|++.+|+++++.. .+.|. ..---|.-.+...|+..+
T Consensus 164 ~q~v~~v~-e~syel~yN~Ac~~i~~gky~qA~elL~kA~~~~~e~l~~~d~~eEeie~el~~IrvQlayVlQ~~Gqt~e 242 (652)
T KOG2376|consen 164 LQSVPEVP-EDSYELLYNTACILIENGKYNQAIELLEKALRICREKLEDEDTNEEEIEEELNPIRVQLAYVLQLQGQTAE 242 (652)
T ss_pred HHhccCCC-cchHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHhhcccccchhhHHHHHHHHHHHHHHHHHHhcchHH
Confidence 22222222 222322 344577899999999999887 22111 122335556778999999
Q ss_pred HHHHHHHHhhcCCccCHhHHHHH---HHHHhcccchhHH--HHHHHHH-----------HHhCCCCChhHHhHHHHHHHh
Q 003584 421 ALKYFSDMRISGICPDHVVVSSI---LSACAELTVLEFG--QQVHAVF-----------LKSGGCSSLSVDNSLVLVYAK 484 (809)
Q Consensus 421 A~~~~~~m~~~g~~p~~~t~~~l---l~a~~~~~~~~~a--~~~~~~~-----------~~~g~~~~~~~~~~li~~y~k 484 (809)
|.+++....... .+|....... |.+...-.++-.+ ...++.. ....-.....--++++.+|.
T Consensus 243 a~~iy~~~i~~~-~~D~~~~Av~~NNLva~~~d~~~~d~~~l~~k~~~~~~l~~~~l~~Ls~~qk~~i~~N~~lL~l~t- 320 (652)
T KOG2376|consen 243 ASSIYVDIIKRN-PADEPSLAVAVNNLVALSKDQNYFDGDLLKSKKSQVFKLAEFLLSKLSKKQKQAIYRNNALLALFT- 320 (652)
T ss_pred HHHHHHHHHHhc-CCCchHHHHHhcchhhhccccccCchHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHh-
Confidence 999999998875 4454332222 2222222222221 1111100 00000111222345566664
Q ss_pred cCCHHHHHHHHHhcCCCC-eeechHHHHHHH--hcCChHHHHHHHHHHHHCCCCCCH--HHHHHHHHHHHccCCHHHHHH
Q 003584 485 CGCINDANRVFDSMHTRD-VITWTALIMGCA--QNGKGKEALQFYDQMLARGTKPDY--ITFVGLLFACSHAGLAENARW 559 (809)
Q Consensus 485 ~g~~~~A~~~~~~~~~~~-~~~~~~li~~~~--~~g~~~~A~~l~~~m~~~g~~pd~--~t~~~ll~a~~~~g~~~~a~~ 559 (809)
+..+.+.++-...+... ...+.+++.... +...+.+|.+++...-+. .|+. +.....+.-....|+++.|.+
T Consensus 321 -nk~~q~r~~~a~lp~~~p~~~~~~ll~~~t~~~~~~~~ka~e~L~~~~~~--~p~~s~~v~L~~aQl~is~gn~~~A~~ 397 (652)
T KOG2376|consen 321 -NKMDQVRELSASLPGMSPESLFPILLQEATKVREKKHKKAIELLLQFADG--HPEKSKVVLLLRAQLKISQGNPEVALE 397 (652)
T ss_pred -hhHHHHHHHHHhCCccCchHHHHHHHHHHHHHHHHHHhhhHHHHHHHhcc--CCchhHHHHHHHHHHHHhcCCHHHHHH
Confidence 45667777777766332 233444444322 233577888888877664 4544 344455556778999999999
Q ss_pred HHH--------HhHHhhCCCCChHHHHHHHHHHhhcCCHHHHHHHHHhCcC--------CCC-HHHHHHHHHHHHhcCCh
Q 003584 560 YFE--------SMDKVYGIKPGPDHYACMIDLLGRSGKLIEAKALLDQMVG--------EPD-ATVWKALLSACRVHGDL 622 (809)
Q Consensus 560 ~~~--------~m~~~~~~~p~~~~~~~li~~~~~~g~~~eA~~~~~~m~~--------~p~-~~~~~~ll~a~~~~g~~ 622 (809)
++. .+.+. +. .+.+...++.+|.+.+.-+-|..++.+... ++. ..+|.-+...-.++|+.
T Consensus 398 il~~~~~~~~ss~~~~-~~--~P~~V~aiv~l~~~~~~~~~a~~vl~~Ai~~~~~~~t~s~~l~~~~~~aa~f~lr~G~~ 474 (652)
T KOG2376|consen 398 ILSLFLESWKSSILEA-KH--LPGTVGAIVALYYKIKDNDSASAVLDSAIKWWRKQQTGSIALLSLMREAAEFKLRHGNE 474 (652)
T ss_pred HHHHHhhhhhhhhhhh-cc--ChhHHHHHHHHHHhccCCccHHHHHHHHHHHHHHhcccchHHHhHHHHHhHHHHhcCch
Confidence 998 44322 33 345566788899998887666666655442 222 22455555555678999
Q ss_pred hHHHHHHHHHhccCCCCCccHHhHhhhhhhcCChhHHHHHH
Q 003584 623 ELGERAANNLFELEPMNAMPYVQLSNMYSTAGKWEDAARVR 663 (809)
Q Consensus 623 ~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~ 663 (809)
++|...++++++..|++....+.++.+|+.. +.+.|..+-
T Consensus 475 ~ea~s~leel~k~n~~d~~~l~~lV~a~~~~-d~eka~~l~ 514 (652)
T KOG2376|consen 475 EEASSLLEELVKFNPNDTDLLVQLVTAYARL-DPEKAESLS 514 (652)
T ss_pred HHHHHHHHHHHHhCCchHHHHHHHHHHHHhc-CHHHHHHHh
Confidence 9999999999999999999999999999875 345555543
No 65
>KOG3616 consensus Selective LIM binding factor [Transcription]
Probab=99.11 E-value=2.2e-07 Score=98.40 Aligned_cols=492 Identities=18% Similarity=0.148 Sum_probs=268.0
Q ss_pred ccCChhHHHHHhhhCCC-CCc-chHHHHHHHHHcCCCchhHHHHHHHHHHcCCCCCcccHHHHHHHhhcCCCchHHHHHH
Q 003584 79 NSGRLREAKKLFNETPF-KNF-FTWSSLIYGYSNYGLDIEAFELFWQMQLEGYRPSQYTLDNVLRLCSLKGLLQRGEQFH 156 (809)
Q Consensus 79 ~~g~~~~A~~~f~~~~~-~~~-~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~ 156 (809)
.-|+++.|...++.... |+. ..|-.+...-...|+.--|.+.| +..|++..++.+|
T Consensus 456 d~~df~ra~afles~~~~~da~amw~~laelale~~nl~iaercf----------------------aai~dvak~r~lh 513 (1636)
T KOG3616|consen 456 DDGDFDRATAFLESLEMGPDAEAMWIRLAELALEAGNLFIAERCF----------------------AAIGDVAKARFLH 513 (1636)
T ss_pred ccCchHHHHHHHHhhccCccHHHHHHHHHHHHHHhccchHHHHHH----------------------HHHHHHHHHHHHH
Confidence 34666666666665432 333 23544444444444444443333 3445566666666
Q ss_pred HHHH-------HhC-CCCchHHHHHHHHhhhcCCChhHHHHHhhhCCCCCCcccHHHHHHHHhhCCChHHHHHHHHHHHH
Q 003584 157 GYAI-------KTC-FDLNAFVVTGLVDMYAKCKCIFEAEYLFKMFPDGKNHVAWTTMITGYSQNGYGFKAIECFRDMRV 228 (809)
Q Consensus 157 ~~~~-------~~g-~~~~~~~~~~li~~y~~~g~~~~A~~~f~~~~~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~ 228 (809)
+-.. +.| -..+-+-..+++.+.. ..+.+|+.+|-+-.. -...|..|....++++|+.+-+..
T Consensus 514 d~~eiadeas~~~ggdgt~fykvra~lail~--kkfk~ae~ifleqn~------te~aigmy~~lhkwde~i~lae~~-- 583 (1636)
T KOG3616|consen 514 DILEIADEASIEIGGDGTDFYKVRAMLAILE--KKFKEAEMIFLEQNA------TEEAIGMYQELHKWDEAIALAEAK-- 583 (1636)
T ss_pred HHHHHHHHHhHhhCCCCchHHHHHHHHHHHH--hhhhHHHHHHHhccc------HHHHHHHHHHHHhHHHHHHHHHhc--
Confidence 5432 222 2233334444444443 356777777754322 234566777777888888765432
Q ss_pred CCCCCCcchHHHHHHHHhccCChHHHHHHHHHHHHhCCCCchhHHHHHHHHHHhCCChHHHHHHHh--ccCCCCeeeHHH
Q 003584 229 EGVESNQFTFPSILTACAAVSARDFGAQVHGCILSSGFEANVYVQSALIDMYAKCGDLDSARRLLE--YSEIDNEVSWNS 306 (809)
Q Consensus 229 ~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~Li~~y~~~g~~~~A~~~f~--~~~~~~~~~~~~ 306 (809)
|.+.-...-.+-++++...|+-+.|-++- .+.--.-+-|..|.+.|..-.|.+.-. +....|......
T Consensus 584 -~~p~~eklk~sy~q~l~dt~qd~ka~elk---------~sdgd~laaiqlyika~~p~~a~~~a~n~~~l~~de~il~~ 653 (1636)
T KOG3616|consen 584 -GHPALEKLKRSYLQALMDTGQDEKAAELK---------ESDGDGLAAIQLYIKAGKPAKAARAALNDEELLADEEILEH 653 (1636)
T ss_pred -CChHHHHHHHHHHHHHHhcCchhhhhhhc---------cccCccHHHHHHHHHcCCchHHHHhhcCHHHhhccHHHHHH
Confidence 22211222234455666666655554431 111222456788999999888876642 222345555566
Q ss_pred HHHHHHhcCChhHHHHHHHHHHHCCCCCCcccHHHHHHHhhcCCChHHHHHHHHHHHHhccCCchH-HHHHHHHHHHhcC
Q 003584 307 MIVGFARQGFHKEALSLFKKMHARDIKIDDFTYPSVLNCFASNIDLNNAKSVHSLIVKTGFEGYKF-VNNALIDMYAKQG 385 (809)
Q Consensus 307 li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~i~~~~~~~g~~~~~~-~~~~li~~y~~~g 385 (809)
+..++.+..-+++|=++|+++.. +...+.++.+...+-.|.++-+... +..++ .-...-.-+...|
T Consensus 654 ia~alik~elydkagdlfeki~d---------~dkale~fkkgdaf~kaielarfaf----p~evv~lee~wg~hl~~~~ 720 (1636)
T KOG3616|consen 654 IAAALIKGELYDKAGDLFEKIHD---------FDKALECFKKGDAFGKAIELARFAF----PEEVVKLEEAWGDHLEQIG 720 (1636)
T ss_pred HHHHHHhhHHHHhhhhHHHHhhC---------HHHHHHHHHcccHHHHHHHHHHhhC----cHHHhhHHHHHhHHHHHHH
Confidence 66777777777777777777642 1223333333333444444433221 11111 1122333455667
Q ss_pred CHHHHHHHHhhcCCCCHhHHHHHHHHHHhcCCHHHHHHHHHHHhhcCCccCHhHHHHHHHHHhcccchhHHHHHHHHHHH
Q 003584 386 NLDCAFMVFNLMQDKDVISWTSLITGCAYHGSYEEALKYFSDMRISGICPDHVVVSSILSACAELTVLEFGQQVHAVFLK 465 (809)
Q Consensus 386 ~~~~A~~~f~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~~~~~~a~~~~~~~~~ 465 (809)
+++.|...|-+... .-..|.+-....+|.+|+.+++.++... .-..-|..+...|++.|+++.|++++...
T Consensus 721 q~daainhfiea~~-----~~kaieaai~akew~kai~ildniqdqk--~~s~yy~~iadhyan~~dfe~ae~lf~e~-- 791 (1636)
T KOG3616|consen 721 QLDAAINHFIEANC-----LIKAIEAAIGAKEWKKAISILDNIQDQK--TASGYYGEIADHYANKGDFEIAEELFTEA-- 791 (1636)
T ss_pred hHHHHHHHHHHhhh-----HHHHHHHHhhhhhhhhhHhHHHHhhhhc--cccccchHHHHHhccchhHHHHHHHHHhc--
Confidence 77777776654421 1122345566778888888888877653 22334556667788888888888776542
Q ss_pred hCCCCChhHHhHHHHHHHhcCCHHHHHHHHHhcCCCC--eeechHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHH
Q 003584 466 SGGCSSLSVDNSLVLVYAKCGCINDANRVFDSMHTRD--VITWTALIMGCAQNGKGKEALQFYDQMLARGTKPDYITFVG 543 (809)
Q Consensus 466 ~g~~~~~~~~~~li~~y~k~g~~~~A~~~~~~~~~~~--~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~pd~~t~~~ 543 (809)
..++--|+||.+.|++++|.++-.+...|. +.+|-+-..-+-.+|++.+|.++|-... .|+.
T Consensus 792 -------~~~~dai~my~k~~kw~da~kla~e~~~~e~t~~~yiakaedldehgkf~eaeqlyiti~----~p~~----- 855 (1636)
T KOG3616|consen 792 -------DLFKDAIDMYGKAGKWEDAFKLAEECHGPEATISLYIAKAEDLDEHGKFAEAEQLYITIG----EPDK----- 855 (1636)
T ss_pred -------chhHHHHHHHhccccHHHHHHHHHHhcCchhHHHHHHHhHHhHHhhcchhhhhheeEEcc----CchH-----
Confidence 223456778888888888888877766543 3345444555667777777777764432 3443
Q ss_pred HHHHHHccCCHHHHHHHHHHhHHhhCCCCChHHHHHHHHHHhhcCCHHHHHHHHHhCcCCCCHHHHHHHHHHHHhcCChh
Q 003584 544 LLFACSHAGLAENARWYFESMDKVYGIKPGPDHYACMIDLLGRSGKLIEAKALLDQMVGEPDATVWKALLSACRVHGDLE 623 (809)
Q Consensus 544 ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~~~~~~~li~~~~~~g~~~eA~~~~~~m~~~p~~~~~~~ll~a~~~~g~~~ 623 (809)
.+..|-+.|..+..+++.+.- .-..-..+...+..-|...|++.+|.+-|-+.. -|.+-++.|...+-++
T Consensus 856 aiqmydk~~~~ddmirlv~k~----h~d~l~dt~~~f~~e~e~~g~lkaae~~flea~------d~kaavnmyk~s~lw~ 925 (1636)
T KOG3616|consen 856 AIQMYDKHGLDDDMIRLVEKH----HGDHLHDTHKHFAKELEAEGDLKAAEEHFLEAG------DFKAAVNMYKASELWE 925 (1636)
T ss_pred HHHHHHhhCcchHHHHHHHHh----ChhhhhHHHHHHHHHHHhccChhHHHHHHHhhh------hHHHHHHHhhhhhhHH
Confidence 244566667666666655422 111122344455666777777777777765543 4666666777766666
Q ss_pred HHHHHHHHHhccCCCCCccHHhHhhhhhhcCChhHHHHHHHH
Q 003584 624 LGERAANNLFELEPMNAMPYVQLSNMYSTAGKWEDAARVRKL 665 (809)
Q Consensus 624 ~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~ 665 (809)
+|-++.+ .....|..-.+...++-+-.| +.|.+++.+
T Consensus 926 dayriak---tegg~n~~k~v~flwaksigg--daavkllnk 962 (1636)
T KOG3616|consen 926 DAYRIAK---TEGGANAEKHVAFLWAKSIGG--DAAVKLLNK 962 (1636)
T ss_pred HHHHHHh---ccccccHHHHHHHHHHHhhCc--HHHHHHHHh
Confidence 6655543 122223333333333333333 455565554
No 66
>PRK12370 invasion protein regulator; Provisional
Probab=99.10 E-value=1.2e-08 Score=114.75 Aligned_cols=243 Identities=12% Similarity=0.023 Sum_probs=171.4
Q ss_pred HHHHHHHHHHHhhcCCccCHh-HHHHHHHHHh---------cccchhHHHHHHHHHHHhCCCCChhHHhHHHHHHHhcCC
Q 003584 418 YEEALKYFSDMRISGICPDHV-VVSSILSACA---------ELTVLEFGQQVHAVFLKSGGCSSLSVDNSLVLVYAKCGC 487 (809)
Q Consensus 418 ~~~A~~~~~~m~~~g~~p~~~-t~~~ll~a~~---------~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~y~k~g~ 487 (809)
.++|+.+|++..+. .|+.. .+..+..++. ..++.++|...++.+++.. +.+...+..+..++...|+
T Consensus 277 ~~~A~~~~~~Al~l--dP~~a~a~~~La~~~~~~~~~g~~~~~~~~~~A~~~~~~Al~ld-P~~~~a~~~lg~~~~~~g~ 353 (553)
T PRK12370 277 LQQALKLLTQCVNM--SPNSIAPYCALAECYLSMAQMGIFDKQNAMIKAKEHAIKATELD-HNNPQALGLLGLINTIHSE 353 (553)
T ss_pred HHHHHHHHHHHHhc--CCccHHHHHHHHHHHHHHHHcCCcccchHHHHHHHHHHHHHhcC-CCCHHHHHHHHHHHHHccC
Confidence 46677777776654 45433 2222222221 2234677777777777765 4566777788888999999
Q ss_pred HHHHHHHHHhcC--CC-CeeechHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHH-HHHHHHHHHHccCCHHHHHHHHHH
Q 003584 488 INDANRVFDSMH--TR-DVITWTALIMGCAQNGKGKEALQFYDQMLARGTKPDYI-TFVGLLFACSHAGLAENARWYFES 563 (809)
Q Consensus 488 ~~~A~~~~~~~~--~~-~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~pd~~-t~~~ll~a~~~~g~~~~a~~~~~~ 563 (809)
+++|...|++.. .| +...|..+...+...|++++|+..+++..+. .|+.. .+..++..+...|++++|...+++
T Consensus 354 ~~~A~~~~~~Al~l~P~~~~a~~~lg~~l~~~G~~~eAi~~~~~Al~l--~P~~~~~~~~~~~~~~~~g~~eeA~~~~~~ 431 (553)
T PRK12370 354 YIVGSLLFKQANLLSPISADIKYYYGWNLFMAGQLEEALQTINECLKL--DPTRAAAGITKLWITYYHTGIDDAIRLGDE 431 (553)
T ss_pred HHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhc--CCCChhhHHHHHHHHHhccCHHHHHHHHHH
Confidence 999999999876 34 3557888888999999999999999999984 56543 334445556778999999999988
Q ss_pred hHHhhCCCC-ChHHHHHHHHHHhhcCCHHHHHHHHHhCcC-CCCHH-HHHHHHHHHHhcCChhHHHHHHHHHhccCCCCC
Q 003584 564 MDKVYGIKP-GPDHYACMIDLLGRSGKLIEAKALLDQMVG-EPDAT-VWKALLSACRVHGDLELGERAANNLFELEPMNA 640 (809)
Q Consensus 564 m~~~~~~~p-~~~~~~~li~~~~~~g~~~eA~~~~~~m~~-~p~~~-~~~~ll~a~~~~g~~~~A~~~~~~~~~~~p~~~ 640 (809)
+.+. ..| +...+..+..+|...|+.++|...++++.. .|+.. .++.+...|...| +.|...++++++..-..+
T Consensus 432 ~l~~--~~p~~~~~~~~la~~l~~~G~~~eA~~~~~~~~~~~~~~~~~~~~l~~~~~~~g--~~a~~~l~~ll~~~~~~~ 507 (553)
T PRK12370 432 LRSQ--HLQDNPILLSMQVMFLSLKGKHELARKLTKEISTQEITGLIAVNLLYAEYCQNS--ERALPTIREFLESEQRID 507 (553)
T ss_pred HHHh--ccccCHHHHHHHHHHHHhCCCHHHHHHHHHHhhhccchhHHHHHHHHHHHhccH--HHHHHHHHHHHHHhhHhh
Confidence 7653 234 445577788899999999999999988764 34433 5666667777777 477777777766432222
Q ss_pred ccHHhHhhhhhhcCChhHHHHHHHHHHhCC
Q 003584 641 MPYVQLSNMYSTAGKWEDAARVRKLMKSRG 670 (809)
Q Consensus 641 ~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~ 670 (809)
..+..+..+|.-.|+-+.+..+ +++.+.+
T Consensus 508 ~~~~~~~~~~~~~g~~~~~~~~-~~~~~~~ 536 (553)
T PRK12370 508 NNPGLLPLVLVAHGEAIAEKMW-NKFKNED 536 (553)
T ss_pred cCchHHHHHHHHHhhhHHHHHH-HHhhccc
Confidence 2333377788888999988877 7776654
No 67
>COG2956 Predicted N-acetylglucosaminyl transferase [Carbohydrate transport and metabolism]
Probab=99.10 E-value=5e-08 Score=94.15 Aligned_cols=217 Identities=13% Similarity=0.100 Sum_probs=155.1
Q ss_pred CCChHHHHHHHHHHHHCCCCCCcchHHHHHHHHhccCChHHHHHHHHHHHHhCC-CC--chhHHHHHHHHHHhCCChHHH
Q 003584 213 NGYGFKAIECFRDMRVEGVESNQFTFPSILTACAAVSARDFGAQVHGCILSSGF-EA--NVYVQSALIDMYAKCGDLDSA 289 (809)
Q Consensus 213 ~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~g~-~~--~~~~~~~Li~~y~~~g~~~~A 289 (809)
+.++++|+++|-+|.+.. +-+..+-.++-+.+.+.|..+.|..+|..++++.- .. -....-.|..-|...|-+|.|
T Consensus 48 s~Q~dKAvdlF~e~l~~d-~~t~e~~ltLGnLfRsRGEvDRAIRiHQ~L~~spdlT~~qr~lAl~qL~~Dym~aGl~DRA 126 (389)
T COG2956 48 SNQPDKAVDLFLEMLQED-PETFEAHLTLGNLFRSRGEVDRAIRIHQTLLESPDLTFEQRLLALQQLGRDYMAAGLLDRA 126 (389)
T ss_pred hcCcchHHHHHHHHHhcC-chhhHHHHHHHHHHHhcchHHHHHHHHHHHhcCCCCchHHHHHHHHHHHHHHHHhhhhhHH
Confidence 468899999999998742 22333445667778899999999999999887531 11 123455677889999999999
Q ss_pred HHHHhccCCCCee---eHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCccc----HHHHHHHhhcCCChHHHHHHHHHH
Q 003584 290 RRLLEYSEIDNEV---SWNSMIVGFARQGFHKEALSLFKKMHARDIKIDDFT----YPSVLNCFASNIDLNNAKSVHSLI 362 (809)
Q Consensus 290 ~~~f~~~~~~~~~---~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t----~~~ll~~~~~~~~~~~a~~i~~~~ 362 (809)
+.+|..+.+.+.. ....|+..|-+..+|++|+++-+++.+.+.++..+- |.-+........+++.|..++...
T Consensus 127 E~~f~~L~de~efa~~AlqqLl~IYQ~treW~KAId~A~~L~k~~~q~~~~eIAqfyCELAq~~~~~~~~d~A~~~l~kA 206 (389)
T COG2956 127 EDIFNQLVDEGEFAEGALQQLLNIYQATREWEKAIDVAERLVKLGGQTYRVEIAQFYCELAQQALASSDVDRARELLKKA 206 (389)
T ss_pred HHHHHHHhcchhhhHHHHHHHHHHHHHhhHHHHHHHHHHHHHHcCCccchhHHHHHHHHHHHHHhhhhhHHHHHHHHHHH
Confidence 9999988764433 456688999999999999999999988776655432 333444445556777777777777
Q ss_pred HHhccCCchHHHHHHHHHHHhcCCHHHHHHHHhhcCCCCHh----HHHHHHHHHHhcCCHHHHHHHHHHHhhc
Q 003584 363 VKTGFEGYKFVNNALIDMYAKQGNLDCAFMVFNLMQDKDVI----SWTSLITGCAYHGSYEEALKYFSDMRIS 431 (809)
Q Consensus 363 ~~~g~~~~~~~~~~li~~y~~~g~~~~A~~~f~~~~~~~~~----~~~~li~~~~~~g~~~~A~~~~~~m~~~ 431 (809)
.+.+ +..+.+--.+.+.+...|+++.|.+.++.+.+.|.. +...|..+|.+.|+.++....+..+.+.
T Consensus 207 lqa~-~~cvRAsi~lG~v~~~~g~y~~AV~~~e~v~eQn~~yl~evl~~L~~~Y~~lg~~~~~~~fL~~~~~~ 278 (389)
T COG2956 207 LQAD-KKCVRASIILGRVELAKGDYQKAVEALERVLEQNPEYLSEVLEMLYECYAQLGKPAEGLNFLRRAMET 278 (389)
T ss_pred HhhC-ccceehhhhhhHHHHhccchHHHHHHHHHHHHhChHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHc
Confidence 7654 334444455666777778888888777777765542 4556667777777777777777777664
No 68
>PRK11189 lipoprotein NlpI; Provisional
Probab=99.09 E-value=7.8e-09 Score=106.31 Aligned_cols=212 Identities=19% Similarity=0.117 Sum_probs=151.8
Q ss_pred chhHHHHHHHHHHHhC-CCC--ChhHHhHHHHHHHhcCCHHHHHHHHHhcC---CCCeeechHHHHHHHhcCChHHHHHH
Q 003584 452 VLEFGQQVHAVFLKSG-GCS--SLSVDNSLVLVYAKCGCINDANRVFDSMH---TRDVITWTALIMGCAQNGKGKEALQF 525 (809)
Q Consensus 452 ~~~~a~~~~~~~~~~g-~~~--~~~~~~~li~~y~k~g~~~~A~~~~~~~~---~~~~~~~~~li~~~~~~g~~~~A~~l 525 (809)
..+.+..-+..++... ..| ....+..+...|.+.|+.++|...|++.. ..+...|+.+...|...|++++|+..
T Consensus 41 ~~e~~i~~~~~~l~~~~~~~~~~a~~~~~~g~~~~~~g~~~~A~~~~~~Al~l~P~~~~a~~~lg~~~~~~g~~~~A~~~ 120 (296)
T PRK11189 41 QQEVILARLNQILASRDLTDEERAQLHYERGVLYDSLGLRALARNDFSQALALRPDMADAYNYLGIYLTQAGNFDAAYEA 120 (296)
T ss_pred HHHHHHHHHHHHHccccCCcHhhHHHHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHCCCHHHHHHH
Confidence 3444555555555422 222 24557778888999999999999999876 33567899999999999999999999
Q ss_pred HHHHHHCCCCCCH-HHHHHHHHHHHccCCHHHHHHHHHHhHHhhCCCCChHHHHHHHHHHhhcCCHHHHHHHHHhCcCCC
Q 003584 526 YDQMLARGTKPDY-ITFVGLLFACSHAGLAENARWYFESMDKVYGIKPGPDHYACMIDLLGRSGKLIEAKALLDQMVGEP 604 (809)
Q Consensus 526 ~~~m~~~g~~pd~-~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~~~~~~~li~~~~~~g~~~eA~~~~~~m~~~p 604 (809)
|++.++ +.|+. .++..+..++...|++++|.+.|+...+ ..|+..........+...++.++|.+.+++.....
T Consensus 121 ~~~Al~--l~P~~~~a~~~lg~~l~~~g~~~eA~~~~~~al~---~~P~~~~~~~~~~l~~~~~~~~~A~~~l~~~~~~~ 195 (296)
T PRK11189 121 FDSVLE--LDPTYNYAYLNRGIALYYGGRYELAQDDLLAFYQ---DDPNDPYRALWLYLAESKLDPKQAKENLKQRYEKL 195 (296)
T ss_pred HHHHHH--hCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHH---hCCCCHHHHHHHHHHHccCCHHHHHHHHHHHHhhC
Confidence 999998 46764 5788888889999999999999998875 34544322222334556788999999997654322
Q ss_pred CHHHHHHHHHHHHhcCChhHHHHHHHHHh-------ccCCCCCccHHhHhhhhhhcCChhHHHHHHHHHHhCC
Q 003584 605 DATVWKALLSACRVHGDLELGERAANNLF-------ELEPMNAMPYVQLSNMYSTAGKWEDAARVRKLMKSRG 670 (809)
Q Consensus 605 ~~~~~~~ll~a~~~~g~~~~A~~~~~~~~-------~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~ 670 (809)
+...|. ........|+...+ ..++.+. ++.|+.+.+|..++.+|...|++++|...|++..+.+
T Consensus 196 ~~~~~~-~~~~~~~lg~~~~~-~~~~~~~~~~~~~~~l~~~~~ea~~~Lg~~~~~~g~~~~A~~~~~~Al~~~ 266 (296)
T PRK11189 196 DKEQWG-WNIVEFYLGKISEE-TLMERLKAGATDNTELAERLCETYFYLAKYYLSLGDLDEAAALFKLALANN 266 (296)
T ss_pred CccccH-HHHHHHHccCCCHH-HHHHHHHhcCCCcHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC
Confidence 223343 22333445665544 2333333 4556677899999999999999999999999988664
No 69
>KOG1174 consensus Anaphase-promoting complex (APC), subunit 7 [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=99.08 E-value=4.7e-07 Score=90.17 Aligned_cols=302 Identities=11% Similarity=-0.019 Sum_probs=196.9
Q ss_pred CCcccHHHHHHHhh--cCCChHHHHHHHHHHHH-hccCCchHHHHHHHHHHHhcCCHHHHHHHHhhcCCCCHhHHHHH--
Q 003584 334 IDDFTYPSVLNCFA--SNIDLNNAKSVHSLIVK-TGFEGYKFVNNALIDMYAKQGNLDCAFMVFNLMQDKDVISWTSL-- 408 (809)
Q Consensus 334 p~~~t~~~ll~~~~--~~~~~~~a~~i~~~~~~-~g~~~~~~~~~~li~~y~~~g~~~~A~~~f~~~~~~~~~~~~~l-- 408 (809)
|+..+...-+.+++ ..++-..+.+.+-.+.. .-++.|+....++.+.|...|+.++|...|++...-|+.+..+|
T Consensus 192 ~~~dwls~wika~Aq~~~~~hs~a~~t~l~le~~~~lr~NvhLl~~lak~~~~~Gdn~~a~~~Fe~~~~~dpy~i~~MD~ 271 (564)
T KOG1174|consen 192 DHFDWLSKWIKALAQMFNFKHSDASQTFLMLHDNTTLRCNEHLMMALGKCLYYNGDYFQAEDIFSSTLCANPDNVEAMDL 271 (564)
T ss_pred CCccHHHHHHHHHHHHHhcccchhhhHHHHHHhhccCCccHHHHHHHhhhhhhhcCchHHHHHHHHHhhCChhhhhhHHH
Confidence 44444444444443 33444444444444433 45677888889999999999999999999998776555443332
Q ss_pred -HHHHHhcCCHHHHHHHHHHHhhcCCccCHhHHHHHHHHHhcccchhHHHHHHHHHHHhCCCCChhHHhHHHHHHHhcCC
Q 003584 409 -ITGCAYHGSYEEALKYFSDMRISGICPDHVVVSSILSACAELTVLEFGQQVHAVFLKSGGCSSLSVDNSLVLVYAKCGC 487 (809)
Q Consensus 409 -i~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~y~k~g~ 487 (809)
.-.+.+.|+++....+...+.... .-....|-.-+...-...+.+.|..+-+..++.. +.+...+-.-...+...|+
T Consensus 272 Ya~LL~~eg~~e~~~~L~~~Lf~~~-~~ta~~wfV~~~~l~~~K~~~rAL~~~eK~I~~~-~r~~~alilKG~lL~~~~R 349 (564)
T KOG1174|consen 272 YAVLLGQEGGCEQDSALMDYLFAKV-KYTASHWFVHAQLLYDEKKFERALNFVEKCIDSE-PRNHEALILKGRLLIALER 349 (564)
T ss_pred HHHHHHhccCHhhHHHHHHHHHhhh-hcchhhhhhhhhhhhhhhhHHHHHHHHHHHhccC-cccchHHHhccHHHHhccc
Confidence 334567788888777777765432 1111112222222334456666666666665543 2223333223455667788
Q ss_pred HHHHHHHHHhcC--C-CCeeechHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHH-HHHHc-cCCHHHHHHHHH
Q 003584 488 INDANRVFDSMH--T-RDVITWTALIMGCAQNGKGKEALQFYDQMLARGTKPDYITFVGLL-FACSH-AGLAENARWYFE 562 (809)
Q Consensus 488 ~~~A~~~~~~~~--~-~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~pd~~t~~~ll-~a~~~-~g~~~~a~~~~~ 562 (809)
.++|.-.|.... . -+..+|..|+..|...|++.||..+-+...+. +..+..++..+. ..|.. ..--++|.++++
T Consensus 350 ~~~A~IaFR~Aq~Lap~rL~~Y~GL~hsYLA~~~~kEA~~~An~~~~~-~~~sA~~LtL~g~~V~~~dp~~rEKAKkf~e 428 (564)
T KOG1174|consen 350 HTQAVIAFRTAQMLAPYRLEIYRGLFHSYLAQKRFKEANALANWTIRL-FQNSARSLTLFGTLVLFPDPRMREKAKKFAE 428 (564)
T ss_pred hHHHHHHHHHHHhcchhhHHHHHHHHHHHHhhchHHHHHHHHHHHHHH-hhcchhhhhhhcceeeccCchhHHHHHHHHH
Confidence 888888888665 3 47788999999999999999988887776553 333444544442 23332 223467888887
Q ss_pred HhHHhhCCCCCh-HHHHHHHHHHhhcCCHHHHHHHHHhCcC-CCCHHHHHHHHHHHHhcCChhHHHHHHHHHhccCCCCC
Q 003584 563 SMDKVYGIKPGP-DHYACMIDLLGRSGKLIEAKALLDQMVG-EPDATVWKALLSACRVHGDLELGERAANNLFELEPMNA 640 (809)
Q Consensus 563 ~m~~~~~~~p~~-~~~~~li~~~~~~g~~~eA~~~~~~m~~-~p~~~~~~~ll~a~~~~g~~~~A~~~~~~~~~~~p~~~ 640 (809)
.-. .+.|+- .....+..++.+.|+.+++..++++... .||....+.|....+..+.+.+|...|..++.++|++-
T Consensus 429 k~L---~~~P~Y~~AV~~~AEL~~~Eg~~~D~i~LLe~~L~~~~D~~LH~~Lgd~~~A~Ne~Q~am~~y~~ALr~dP~~~ 505 (564)
T KOG1174|consen 429 KSL---KINPIYTPAVNLIAELCQVEGPTKDIIKLLEKHLIIFPDVNLHNHLGDIMRAQNEPQKAMEYYYKALRQDPKSK 505 (564)
T ss_pred hhh---ccCCccHHHHHHHHHHHHhhCccchHHHHHHHHHhhccccHHHHHHHHHHHHhhhHHHHHHHHHHHHhcCccch
Confidence 654 556664 4556677888889999999999887765 58888888999999999999999999999999999774
Q ss_pred c
Q 003584 641 M 641 (809)
Q Consensus 641 ~ 641 (809)
.
T Consensus 506 ~ 506 (564)
T KOG1174|consen 506 R 506 (564)
T ss_pred H
Confidence 3
No 70
>KOG2047 consensus mRNA splicing factor [RNA processing and modification]
Probab=99.08 E-value=1.6e-05 Score=83.89 Aligned_cols=431 Identities=14% Similarity=0.099 Sum_probs=237.5
Q ss_pred HHhcCCChHHHHHHHHhcCC-----CCcchHHHHHHHHHccCChhHHHHHhhhCCCCCcchHHHHHHHHHcCCCchhHHH
Q 003584 45 DFSNSGEIDEAGQLFEKMSD-----RDGFTWNTMIAAYANSGRLREAKKLFNETPFKNFFTWSSLIYGYSNYGLDIEAFE 119 (809)
Q Consensus 45 ~~~~~~~~~~a~~~~~~~~~-----~~~~~~~~li~~~~~~g~~~~A~~~f~~~~~~~~~~~~~li~~~~~~g~~~~A~~ 119 (809)
....+|++..-++.|++.+. ....+|...+......|-++-+.+++.+-.+-++..-+--|.-+++.++.++|.+
T Consensus 111 ~l~~Q~~iT~tR~tfdrALraLpvtqH~rIW~lyl~Fv~~~~lPets~rvyrRYLk~~P~~~eeyie~L~~~d~~~eaa~ 190 (835)
T KOG2047|consen 111 FLIKQGLITRTRRTFDRALRALPVTQHDRIWDLYLKFVESHGLPETSIRVYRRYLKVAPEAREEYIEYLAKSDRLDEAAQ 190 (835)
T ss_pred HHHhcchHHHHHHHHHHHHHhCchHhhccchHHHHHHHHhCCChHHHHHHHHHHHhcCHHHHHHHHHHHHhccchHHHHH
Confidence 33455666666666666554 2345677777777777888888888888776666667778888888999999888
Q ss_pred HHHHHHHcC------CCCCcccHHHHHHHhhcCCCchHHHHHHHHHHHhCCC--Cc--hHHHHHHHHhhhcCCChhHHHH
Q 003584 120 LFWQMQLEG------YRPSQYTLDNVLRLCSLKGLLQRGEQFHGYAIKTCFD--LN--AFVVTGLVDMYAKCKCIFEAEY 189 (809)
Q Consensus 120 ~~~~m~~~g------~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~--~~--~~~~~~li~~y~~~g~~~~A~~ 189 (809)
.+....... -+-+...|.-+-...++..+.-....+ +.+++.|+. +| .+.|++|.+-|.+.|.++.|+.
T Consensus 191 ~la~vln~d~f~sk~gkSn~qlw~elcdlis~~p~~~~slnv-daiiR~gi~rftDq~g~Lw~SLAdYYIr~g~~ekarD 269 (835)
T KOG2047|consen 191 RLATVLNQDEFVSKKGKSNHQLWLELCDLISQNPDKVQSLNV-DAIIRGGIRRFTDQLGFLWCSLADYYIRSGLFEKARD 269 (835)
T ss_pred HHHHhcCchhhhhhcccchhhHHHHHHHHHHhCcchhcccCH-HHHHHhhcccCcHHHHHHHHHHHHHHHHhhhhHHHHH
Confidence 887765322 122333455555555555444333332 334444432 22 4789999999999999999999
Q ss_pred HhhhCCCC-CCcccHHHHHHHHhhC----------------CC------hHHHHHHHHHHHHCCC----------CC-Cc
Q 003584 190 LFKMFPDG-KNHVAWTTMITGYSQN----------------GY------GFKAIECFRDMRVEGV----------ES-NQ 235 (809)
Q Consensus 190 ~f~~~~~~-~~~~~~~~li~~~~~~----------------g~------~~~A~~l~~~m~~~g~----------~p-~~ 235 (809)
+|++.... -.+.-++.+-+.|++- |+ ++-.+.-|+.+...+. .| +.
T Consensus 270 vyeeai~~v~tvrDFt~ifd~Ya~FEE~~~~~~me~a~~~~~n~ed~~dl~~~~a~~e~lm~rr~~~lNsVlLRQn~~nV 349 (835)
T KOG2047|consen 270 VYEEAIQTVMTVRDFTQIFDAYAQFEESCVAAKMELADEESGNEEDDVDLELHMARFESLMNRRPLLLNSVLLRQNPHNV 349 (835)
T ss_pred HHHHHHHhheehhhHHHHHHHHHHHHHHHHHHHHhhhhhcccChhhhhhHHHHHHHHHHHHhccchHHHHHHHhcCCccH
Confidence 99875431 2233344444444332 11 1122222333322210 01 11
Q ss_pred chHHHHHHHHhccCChHHHHHHHHHHHHhCC-----CCchhHHHHHHHHHHhCCChHHHHHHHhccCCCCee-------e
Q 003584 236 FTFPSILTACAAVSARDFGAQVHGCILSSGF-----EANVYVQSALIDMYAKCGDLDSARRLLEYSEIDNEV-------S 303 (809)
Q Consensus 236 ~t~~~ll~~~~~~~~~~~a~~~~~~~~~~g~-----~~~~~~~~~Li~~y~~~g~~~~A~~~f~~~~~~~~~-------~ 303 (809)
.+|..-.. ...|+..+-...+.++++.-- ..-...|..+.+.|-..|+++.|+.+|++...-+-. .
T Consensus 350 ~eW~kRV~--l~e~~~~~~i~tyteAv~~vdP~ka~Gs~~~Lw~~faklYe~~~~l~~aRvifeka~~V~y~~v~dLa~v 427 (835)
T KOG2047|consen 350 EEWHKRVK--LYEGNAAEQINTYTEAVKTVDPKKAVGSPGTLWVEFAKLYENNGDLDDARVIFEKATKVPYKTVEDLAEV 427 (835)
T ss_pred HHHHhhhh--hhcCChHHHHHHHHHHHHccCcccCCCChhhHHHHHHHHHHhcCcHHHHHHHHHHhhcCCccchHHHHHH
Confidence 11211111 123445555566666665321 112345777888888888888888888876543322 3
Q ss_pred HHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCcccHHHHHHHhhcCCChHHHHHHHHHHHHhccCCchHHHHHHHHHHHh
Q 003584 304 WNSMIVGFARQGFHKEALSLFKKMHARDIKIDDFTYPSVLNCFASNIDLNNAKSVHSLIVKTGFEGYKFVNNALIDMYAK 383 (809)
Q Consensus 304 ~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~i~~~~~~~g~~~~~~~~~~li~~y~~ 383 (809)
|..-...=.+..+++.|+.+.++... .|.... + .+...+..-++ .+..+..+|...++.--.
T Consensus 428 w~~waemElrh~~~~~Al~lm~~A~~---vP~~~~----~-~~yd~~~pvQ~----------rlhrSlkiWs~y~DleEs 489 (835)
T KOG2047|consen 428 WCAWAEMELRHENFEAALKLMRRATH---VPTNPE----L-EYYDNSEPVQA----------RLHRSLKIWSMYADLEES 489 (835)
T ss_pred HHHHHHHHHhhhhHHHHHHHHHhhhc---CCCchh----h-hhhcCCCcHHH----------HHHHhHHHHHHHHHHHHH
Confidence 44444445556667777776665543 233221 1 11112221111 112345567777777778
Q ss_pred cCCHHHHHHHHhhcCCCCHhHHHHH---HHHHHhcCCHHHHHHHHHHHhhcCCccCHh-HHHHHHHHHh---cccchhHH
Q 003584 384 QGNLDCAFMVFNLMQDKDVISWTSL---ITGCAYHGSYEEALKYFSDMRISGICPDHV-VVSSILSACA---ELTVLEFG 456 (809)
Q Consensus 384 ~g~~~~A~~~f~~~~~~~~~~~~~l---i~~~~~~g~~~~A~~~~~~m~~~g~~p~~~-t~~~ll~a~~---~~~~~~~a 456 (809)
.|-++....+++.+.+--+.|=... ..-+-.+.-++++.+++++-...=--|+.. .|++.|.-+. ....++.+
T Consensus 490 ~gtfestk~vYdriidLriaTPqii~NyAmfLEeh~yfeesFk~YErgI~LFk~p~v~diW~tYLtkfi~rygg~klEra 569 (835)
T KOG2047|consen 490 LGTFESTKAVYDRIIDLRIATPQIIINYAMFLEEHKYFEESFKAYERGISLFKWPNVYDIWNTYLTKFIKRYGGTKLERA 569 (835)
T ss_pred hccHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhHHHHHHHHHHHcCCccCCCccHHHHHHHHHHHHHHHhcCCCHHHH
Confidence 8889999999988876322221111 112334556788888887655432234432 3444444332 23457777
Q ss_pred HHHHHHHHHhCCCCChhHHhHHHHHHHh----cCCHHHHHHHHHhcC
Q 003584 457 QQVHAVFLKSGGCSSLSVDNSLVLVYAK----CGCINDANRVFDSMH 499 (809)
Q Consensus 457 ~~~~~~~~~~g~~~~~~~~~~li~~y~k----~g~~~~A~~~~~~~~ 499 (809)
+.+|+++++ |.+|. ...++--.|++ -|....|.+++++..
T Consensus 570 RdLFEqaL~-~Cpp~--~aKtiyLlYA~lEEe~GLar~amsiyerat 613 (835)
T KOG2047|consen 570 RDLFEQALD-GCPPE--HAKTIYLLYAKLEEEHGLARHAMSIYERAT 613 (835)
T ss_pred HHHHHHHHh-cCCHH--HHHHHHHHHHHHHHHhhHHHHHHHHHHHHH
Confidence 888887777 44432 22223333433 355555555555543
No 71
>KOG0985 consensus Vesicle coat protein clathrin, heavy chain [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.07 E-value=1e-05 Score=89.18 Aligned_cols=438 Identities=13% Similarity=0.102 Sum_probs=232.4
Q ss_pred HHHHHHHHHccCChhHHHHHhhhCCC-CCcchHHHH-----HHHHHcCCCchhHHHHHHHHHHcCCCCCcccHHHHHHHh
Q 003584 70 WNTMIAAYANSGRLREAKKLFNETPF-KNFFTWSSL-----IYGYSNYGLDIEAFELFWQMQLEGYRPSQYTLDNVLRLC 143 (809)
Q Consensus 70 ~~~li~~~~~~g~~~~A~~~f~~~~~-~~~~~~~~l-----i~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~ 143 (809)
+..+.+.|.++|-+..|++.+..+.. +-++.-+.+ +..|.-.-.++++++.+..|...+++-|..+...+..-+
T Consensus 609 ra~IAqLCEKAGL~qraLehytDl~DIKR~vVhth~L~pEwLv~yFg~lsve~s~eclkaml~~NirqNlQi~VQvatky 688 (1666)
T KOG0985|consen 609 RAEIAQLCEKAGLLQRALEHYTDLYDIKRVVVHTHLLNPEWLVNYFGSLSVEDSLECLKAMLSANIRQNLQIVVQVATKY 688 (1666)
T ss_pred HHHHHHHHHhcchHHHHHHhcccHHHHHHHHHHhccCCHHHHHHHHHhcCHHHHHHHHHHHHHHHHHhhhHHHHHHHHHH
Confidence 55677788899999999998877653 111111111 224445557889999999999988888877655555444
Q ss_pred hcCCCchHHHHHHHHHHH-----------hCCCCchHHHHHHHHhhhcCCChhHHHHHhhhCCC----------------
Q 003584 144 SLKGLLQRGEQFHGYAIK-----------TCFDLNAFVVTGLVDMYAKCKCIFEAEYLFKMFPD---------------- 196 (809)
Q Consensus 144 ~~~~~~~~a~~~~~~~~~-----------~g~~~~~~~~~~li~~y~~~g~~~~A~~~f~~~~~---------------- 196 (809)
...-..+...++++.... -.+..|+.+.-..|.+-++.|++.+.+++-++-..
T Consensus 689 ~eqlg~~~li~lFE~fks~eGL~yfLgSivn~seDpevh~KYIqAA~kt~QikEvERicresn~YdpErvKNfLkeAkL~ 768 (1666)
T KOG0985|consen 689 HEQLGAQALIELFESFKSYEGLYYFLGSIVNFSEDPEVHFKYIQAACKTGQIKEVERICRESNCYDPERVKNFLKEAKLT 768 (1666)
T ss_pred HHHhCHHHHHHHHHhhccchhHHHHHHHHhccccCchHHHHHHHHHHhhccHHHHHHHHhccccCCHHHHHHHHHhcccc
Confidence 333333333333333221 13456777888899999999999999887653221
Q ss_pred -C-------------CCcccH------HHHHHHHhhCCChHHHHHHHHHHHHCCCCC-----------CcchHHHHHHHH
Q 003584 197 -G-------------KNHVAW------TTMITGYSQNGYGFKAIECFRDMRVEGVES-----------NQFTFPSILTAC 245 (809)
Q Consensus 197 -~-------------~~~~~~------~~li~~~~~~g~~~~A~~l~~~m~~~g~~p-----------~~~t~~~ll~~~ 245 (809)
+ +|.+.| --.|..|++.-++...-.+.-.+......- ..+...-+..-+
T Consensus 769 DqlPLiiVCDRf~fVhdlvlYLyrnn~~kyIE~yVQkvNps~~p~VvG~LLD~dC~E~~ik~Li~~v~gq~~~deLv~Ev 848 (1666)
T KOG0985|consen 769 DQLPLIIVCDRFDFVHDLVLYLYRNNLQKYIEIYVQKVNPSRTPQVVGALLDVDCSEDFIKNLILSVRGQFPVDELVEEV 848 (1666)
T ss_pred ccCceEEEecccccHHHHHHHHHHhhHHHHHHHHHhhcCCcccchhhhhhhcCCCcHHHHHHHHHHHhccCChHHHHHHH
Confidence 0 011111 122444554433333222222222111100 011122233344
Q ss_pred hccCChHHHHHHHHHHHHhCCCCchhHHHHHHHHHHhCCChHHHH-H---------------------------------
Q 003584 246 AAVSARDFGAQVHGCILSSGFEANVYVQSALIDMYAKCGDLDSAR-R--------------------------------- 291 (809)
Q Consensus 246 ~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~Li~~y~~~g~~~~A~-~--------------------------------- 291 (809)
.+.+++..-...++..+..| ..|+.++|+|...|...++-.+-. +
T Consensus 849 EkRNRLklLlp~LE~~i~eG-~~d~a~hnAlaKIyIDSNNnPE~fLkeN~yYDs~vVGkYCEKRDP~lA~vaYerGqcD~ 927 (1666)
T KOG0985|consen 849 EKRNRLKLLLPWLESLIQEG-SQDPATHNALAKIYIDSNNNPERFLKENPYYDSKVVGKYCEKRDPHLACVAYERGQCDL 927 (1666)
T ss_pred HhhhhHHHHHHHHHHHHhcc-CcchHHHhhhhheeecCCCChHHhcccCCcchhhHHhhhhcccCCceEEEeecccCCcH
Confidence 55666777777778888888 558888999888876554322110 0
Q ss_pred ----------HHhc-----cCCC--------------------------------CeeeHHHHHHHHHhcCChhHHHHHH
Q 003584 292 ----------LLEY-----SEID--------------------------------NEVSWNSMIVGFARQGFHKEALSLF 324 (809)
Q Consensus 292 ----------~f~~-----~~~~--------------------------------~~~~~~~li~~~~~~g~~~~A~~~~ 324 (809)
+|.. .... |+..-..-+.++...+-+.+-++++
T Consensus 928 elI~vcNeNSlfK~~aRYlv~R~D~~LW~~VL~e~n~~rRqLiDqVv~tal~E~~dPe~vS~tVkAfMtadLp~eLIELL 1007 (1666)
T KOG0985|consen 928 ELINVCNENSLFKSQARYLVERSDPDLWAKVLNEENPYRRQLIDQVVQTALPETQDPEEVSVTVKAFMTADLPNELIELL 1007 (1666)
T ss_pred HHHHhcCchhHHHHHHHHHHhccChHHHHHHHhccChHHHHHHHHHHHhcCCccCChHHHHHHHHHHHhcCCcHHHHHHH
Confidence 0000 0001 1122233334455555555555555
Q ss_pred HHHHHCCCCCC-cccHHHHHHHhhcCCChHHHHHHHHHHHHhccCCchHHHHHHHHHHHhcCCHHHHHHHHhhcCC----
Q 003584 325 KKMHARDIKID-DFTYPSVLNCFASNIDLNNAKSVHSLIVKTGFEGYKFVNNALIDMYAKQGNLDCAFMVFNLMQD---- 399 (809)
Q Consensus 325 ~~m~~~g~~p~-~~t~~~ll~~~~~~~~~~~a~~i~~~~~~~g~~~~~~~~~~li~~y~~~g~~~~A~~~f~~~~~---- 399 (809)
+++.-.+-..+ ...+-.++-.-+-..+.....+....+-... . -.+.......+-+++|..+|+...-
T Consensus 1008 EKIvL~~S~Fse~~nLQnLLiLtAikad~trVm~YI~rLdnyD-a------~~ia~iai~~~LyEEAF~ifkkf~~n~~A 1080 (1666)
T KOG0985|consen 1008 EKIVLDNSVFSENRNLQNLLILTAIKADRTRVMEYINRLDNYD-A------PDIAEIAIENQLYEEAFAIFKKFDMNVSA 1080 (1666)
T ss_pred HHHhcCCcccccchhhhhhHHHHHhhcChHHHHHHHHHhccCC-c------hhHHHHHhhhhHHHHHHHHHHHhcccHHH
Confidence 55542211000 0001111111111111111111111111100 0 0112222333334444444443221
Q ss_pred ---------------------CCHhHHHHHHHHHHhcCCHHHHHHHHHHHhhcCCccCHhHHHHHHHHHhcccchhHHHH
Q 003584 400 ---------------------KDVISWTSLITGCAYHGSYEEALKYFSDMRISGICPDHVVVSSILSACAELTVLEFGQQ 458 (809)
Q Consensus 400 ---------------------~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~~~~~~a~~ 458 (809)
..+..|..+..+-.+.|...+|++-|-+. -|+..|.-++..+.+.|.+++-..
T Consensus 1081 ~~VLie~i~~ldRA~efAe~~n~p~vWsqlakAQL~~~~v~dAieSyika------dDps~y~eVi~~a~~~~~~edLv~ 1154 (1666)
T KOG0985|consen 1081 IQVLIENIGSLDRAYEFAERCNEPAVWSQLAKAQLQGGLVKDAIESYIKA------DDPSNYLEVIDVASRTGKYEDLVK 1154 (1666)
T ss_pred HHHHHHHhhhHHHHHHHHHhhCChHHHHHHHHHHHhcCchHHHHHHHHhc------CCcHHHHHHHHHHHhcCcHHHHHH
Confidence 13457888888888889988888877543 366788899999999999999888
Q ss_pred HHHHHHHhCCCCChhHHhHHHHHHHhcCCHHHHHHHHHhcCCCCeeechHHHHHHHhcCChHHHHHHH
Q 003584 459 VHAVFLKSGGCSSLSVDNSLVLVYAKCGCINDANRVFDSMHTRDVITWTALIMGCAQNGKGKEALQFY 526 (809)
Q Consensus 459 ~~~~~~~~g~~~~~~~~~~li~~y~k~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~l~ 526 (809)
.+..+.+..-.|.+ -+.||-+|+|.+++.+-++++. -||+.....+.+-|...|.++.|.-+|
T Consensus 1155 yL~MaRkk~~E~~i--d~eLi~AyAkt~rl~elE~fi~---gpN~A~i~~vGdrcf~~~~y~aAkl~y 1217 (1666)
T KOG0985|consen 1155 YLLMARKKVREPYI--DSELIFAYAKTNRLTELEEFIA---GPNVANIQQVGDRCFEEKMYEAAKLLY 1217 (1666)
T ss_pred HHHHHHHhhcCccc--hHHHHHHHHHhchHHHHHHHhc---CCCchhHHHHhHHHhhhhhhHHHHHHH
Confidence 88888777666554 4678888999888887666542 344444444444455555555444444
No 72
>KOG1129 consensus TPR repeat-containing protein [General function prediction only]
Probab=99.03 E-value=1.6e-08 Score=97.20 Aligned_cols=227 Identities=15% Similarity=0.106 Sum_probs=141.8
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHhhcCCccCHhHHHHHHHHHhcccchhHHHHHHHHHHHhCCCCChhHHhHHHHHHHhcC
Q 003584 407 SLITGCAYHGSYEEALKYFSDMRISGICPDHVVVSSILSACAELTVLEFGQQVHAVFLKSGGCSSLSVDNSLVLVYAKCG 486 (809)
Q Consensus 407 ~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~y~k~g 486 (809)
.|..+|.+.|.+.+|.+.|+.-.+. .|-..||..+-.+|.+...++.|..++..-++. ++.++....-....+...+
T Consensus 228 Q~gkCylrLgm~r~AekqlqssL~q--~~~~dTfllLskvY~ridQP~~AL~~~~~gld~-fP~~VT~l~g~ARi~eam~ 304 (478)
T KOG1129|consen 228 QMGKCYLRLGMPRRAEKQLQSSLTQ--FPHPDTFLLLSKVYQRIDQPERALLVIGEGLDS-FPFDVTYLLGQARIHEAME 304 (478)
T ss_pred HHHHHHHHhcChhhhHHHHHHHhhc--CCchhHHHHHHHHHHHhccHHHHHHHHhhhhhc-CCchhhhhhhhHHHHHHHH
Confidence 3445555555555555555554443 233334444444444444444444333333221 1222222233344455556
Q ss_pred CHHHHHHHHHhcCC---CCeeechHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHH
Q 003584 487 CINDANRVFDSMHT---RDVITWTALIMGCAQNGKGKEALQFYDQMLARGTKPDYITFVGLLFACSHAGLAENARWYFES 563 (809)
Q Consensus 487 ~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~pd~~t~~~ll~a~~~~g~~~~a~~~~~~ 563 (809)
+.++|.+++....+ .++.+..++..+|...++++-|+..|+++++.|+. +...|..+.-+|.-.++++-+..-|++
T Consensus 305 ~~~~a~~lYk~vlk~~~~nvEaiAcia~~yfY~~~PE~AlryYRRiLqmG~~-speLf~NigLCC~yaqQ~D~~L~sf~R 383 (478)
T KOG1129|consen 305 QQEDALQLYKLVLKLHPINVEAIACIAVGYFYDNNPEMALRYYRRILQMGAQ-SPELFCNIGLCCLYAQQIDLVLPSFQR 383 (478)
T ss_pred hHHHHHHHHHHHHhcCCccceeeeeeeeccccCCChHHHHHHHHHHHHhcCC-ChHHHhhHHHHHHhhcchhhhHHHHHH
Confidence 66666666665542 34555566666677777777777777777776643 445566666666666666666555544
Q ss_pred hHHhhCCCCChHHHHHHHHHHhhcCCHHHHHHHHHhCcCCCC--HHHHHHHHHHHHhcCChhHHHHHHHHHhccCCCCCc
Q 003584 564 MDKVYGIKPGPDHYACMIDLLGRSGKLIEAKALLDQMVGEPD--ATVWKALLSACRVHGDLELGERAANNLFELEPMNAM 641 (809)
Q Consensus 564 m~~~~~~~p~~~~~~~li~~~~~~g~~~eA~~~~~~m~~~p~--~~~~~~ll~a~~~~g~~~~A~~~~~~~~~~~p~~~~ 641 (809)
.... +. .|+ ..+|-.|.......||+..|.+.|+-++..+|++..
T Consensus 384 Alst--------------------------------at-~~~~aaDvWYNlg~vaV~iGD~nlA~rcfrlaL~~d~~h~e 430 (478)
T KOG1129|consen 384 ALST--------------------------------AT-QPGQAADVWYNLGFVAVTIGDFNLAKRCFRLALTSDAQHGE 430 (478)
T ss_pred HHhh--------------------------------cc-CcchhhhhhhccceeEEeccchHHHHHHHHHHhccCcchHH
Confidence 4321 11 233 347888888889999999999999999999999999
Q ss_pred cHHhHhhhhhhcCChhHHHHHHHHHHhCC
Q 003584 642 PYVQLSNMYSTAGKWEDAARVRKLMKSRG 670 (809)
Q Consensus 642 ~~~~l~~~~~~~g~~~~A~~~~~~m~~~~ 670 (809)
+++.|+-+-.+.|+.++|..++...++..
T Consensus 431 alnNLavL~~r~G~i~~Arsll~~A~s~~ 459 (478)
T KOG1129|consen 431 ALNNLAVLAARSGDILGARSLLNAAKSVM 459 (478)
T ss_pred HHHhHHHHHhhcCchHHHHHHHHHhhhhC
Confidence 99999999999999999999999887653
No 73
>TIGR02521 type_IV_pilW type IV pilus biogenesis/stability protein PilW. Members of this family are designated PilF in ref (PubMed:8973346) and PilW in ref (PubMed:15612916). This outer membrane protein is required both for pilus stability and for pilus function such as adherence to human cells. Members of this family contain copies of the TPR (tetratricopeptide repeat) domain.
Probab=99.02 E-value=5.5e-08 Score=96.89 Aligned_cols=197 Identities=19% Similarity=0.181 Sum_probs=118.9
Q ss_pred HhHHHHHHHHHHhcCCHHHHHHHHHHHhhcCCccCHhHHHHHHHHHhcccchhHHHHHHHHHHHhCCCCChhHHhHHHHH
Q 003584 402 VISWTSLITGCAYHGSYEEALKYFSDMRISGICPDHVVVSSILSACAELTVLEFGQQVHAVFLKSGGCSSLSVDNSLVLV 481 (809)
Q Consensus 402 ~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~ 481 (809)
...+..+...|...|++++|.+.+++..+.. |+ +...+..+...
T Consensus 31 ~~~~~~la~~~~~~~~~~~A~~~~~~~l~~~--p~----------------------------------~~~~~~~la~~ 74 (234)
T TIGR02521 31 AKIRVQLALGYLEQGDLEVAKENLDKALEHD--PD----------------------------------DYLAYLALALY 74 (234)
T ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC--cc----------------------------------cHHHHHHHHHH
Confidence 4567777788888888888888888776542 32 12233334444
Q ss_pred HHhcCCHHHHHHHHHhcC---CCCeeechHHHHHHHhcCChHHHHHHHHHHHHCCCCC-CHHHHHHHHHHHHccCCHHHH
Q 003584 482 YAKCGCINDANRVFDSMH---TRDVITWTALIMGCAQNGKGKEALQFYDQMLARGTKP-DYITFVGLLFACSHAGLAENA 557 (809)
Q Consensus 482 y~k~g~~~~A~~~~~~~~---~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p-d~~t~~~ll~a~~~~g~~~~a 557 (809)
|...|++++|.+.|++.. +.+...+..+...+...|++++|.+.|++.......| +...+..+..++...|++++|
T Consensus 75 ~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A 154 (234)
T TIGR02521 75 YQQLGELEKAEDSFRRALTLNPNNGDVLNNYGTFLCQQGKYEQAMQQFEQAIEDPLYPQPARSLENAGLCALKAGDFDKA 154 (234)
T ss_pred HHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcccHHHHHHHHHHHHhccccccchHHHHHHHHHHHHcCCHHHH
Confidence 555555555555555443 2233445555566666666777777766666532222 223455556666777777777
Q ss_pred HHHHHHhHHhhCCCCChHHHHHHHHHHhhcCCHHHHHHHHHhCcC--CCCHHHHHHHHHHHHhcCChhHHHHHHHHHhcc
Q 003584 558 RWYFESMDKVYGIKPGPDHYACMIDLLGRSGKLIEAKALLDQMVG--EPDATVWKALLSACRVHGDLELGERAANNLFEL 635 (809)
Q Consensus 558 ~~~~~~m~~~~~~~p~~~~~~~li~~~~~~g~~~eA~~~~~~m~~--~p~~~~~~~ll~a~~~~g~~~~A~~~~~~~~~~ 635 (809)
...++...+. .+.+...+..+...+...|++++|...+++... +.+...+..+...+...|+.+.|....+.+.+.
T Consensus 155 ~~~~~~~~~~--~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~ 232 (234)
T TIGR02521 155 EKYLTRALQI--DPQRPESLLELAELYYLRGQYKDARAYLERYQQTYNQTAESLWLGIRIARALGDVAAAQRYGAQLQKL 232 (234)
T ss_pred HHHHHHHHHh--CcCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHhhHHHHHHHHHHHHhh
Confidence 7777666542 122345566677777777777777777766543 234455666667777777777777776666554
Q ss_pred C
Q 003584 636 E 636 (809)
Q Consensus 636 ~ 636 (809)
.
T Consensus 233 ~ 233 (234)
T TIGR02521 233 F 233 (234)
T ss_pred C
Confidence 3
No 74
>KOG1173 consensus Anaphase-promoting complex (APC), Cdc16 subunit [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=99.02 E-value=7.8e-07 Score=92.49 Aligned_cols=276 Identities=16% Similarity=0.068 Sum_probs=151.5
Q ss_pred HHHHHhcCChhHHHHHHHHHHHCCCCCCcccHHHHHHHhhcCCChHHHHHHHHHHHHhccCCchHHHHHHHHHHHhcCCH
Q 003584 308 IVGFARQGFHKEALSLFKKMHARDIKIDDFTYPSVLNCFASNIDLNNAKSVHSLIVKTGFEGYKFVNNALIDMYAKQGNL 387 (809)
Q Consensus 308 i~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~i~~~~~~~g~~~~~~~~~~li~~y~~~g~~ 387 (809)
..-+...+++.+..++++...+.. ++....+..-|.++...|+...-..+-..+++. .|..+.+|-++.--|.-.|+.
T Consensus 251 ad~~y~~c~f~~c~kit~~lle~d-pfh~~~~~~~ia~l~el~~~n~Lf~lsh~LV~~-yP~~a~sW~aVg~YYl~i~k~ 328 (611)
T KOG1173|consen 251 ADRLYYGCRFKECLKITEELLEKD-PFHLPCLPLHIACLYELGKSNKLFLLSHKLVDL-YPSKALSWFAVGCYYLMIGKY 328 (611)
T ss_pred HHHHHHcChHHHHHHHhHHHHhhC-CCCcchHHHHHHHHHHhcccchHHHHHHHHHHh-CCCCCcchhhHHHHHHHhcCc
Confidence 344445556666666666655542 233334444444555555544444443444433 255666777777778788888
Q ss_pred HHHHHHHhhcCCCC---HhHHHHHHHHHHhcCCHHHHHHHHHHHhhc--CC-ccCHhHHHHHHHHHhcccchhHHHHHHH
Q 003584 388 DCAFMVFNLMQDKD---VISWTSLITGCAYHGSYEEALKYFSDMRIS--GI-CPDHVVVSSILSACAELTVLEFGQQVHA 461 (809)
Q Consensus 388 ~~A~~~f~~~~~~~---~~~~~~li~~~~~~g~~~~A~~~~~~m~~~--g~-~p~~~t~~~ll~a~~~~~~~~~a~~~~~ 461 (809)
.+|++.|.....-| ...|-.+...|+-.|..++|+..+...-+. |. .|. - -+---|...++++.|.+.+.
T Consensus 329 seARry~SKat~lD~~fgpaWl~fghsfa~e~EhdQAmaaY~tAarl~~G~hlP~--L--Ylgmey~~t~n~kLAe~Ff~ 404 (611)
T KOG1173|consen 329 SEARRYFSKATTLDPTFGPAWLAFGHSFAGEGEHDQAMAAYFTAARLMPGCHLPS--L--YLGMEYMRTNNLKLAEKFFK 404 (611)
T ss_pred HHHHHHHHHHhhcCccccHHHHHHhHHhhhcchHHHHHHHHHHHHHhccCCcchH--H--HHHHHHHHhccHHHHHHHHH
Confidence 88888888765433 357888889999999999998888766542 21 111 1 11122445556666666665
Q ss_pred HHHHhCCCCChhHHhHHHHHHHhcCCHHHHHHHHHhcCCCCeeechHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHH
Q 003584 462 VFLKSGGCSSLSVDNSLVLVYAKCGCINDANRVFDSMHTRDVITWTALIMGCAQNGKGKEALQFYDQMLARGTKPDYITF 541 (809)
Q Consensus 462 ~~~~~g~~~~~~~~~~li~~y~k~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~pd~~t~ 541 (809)
++.... +.|+.+.+-+.-++-..+.+.+|...|+....+ .+....+ ..--..++
T Consensus 405 ~A~ai~-P~Dplv~~Elgvvay~~~~y~~A~~~f~~~l~~------------------------ik~~~~e-~~~w~p~~ 458 (611)
T KOG1173|consen 405 QALAIA-PSDPLVLHELGVVAYTYEEYPEALKYFQKALEV------------------------IKSVLNE-KIFWEPTL 458 (611)
T ss_pred HHHhcC-CCcchhhhhhhheeehHhhhHHHHHHHHHHHHH------------------------hhhcccc-ccchhHHH
Confidence 554433 344555555544444445555555555433200 0000000 00012345
Q ss_pred HHHHHHHHccCCHHHHHHHHHHhHHhhCCCCChHHHHHHHHHHhhcCCHHHHHHHHHhCcC-CCCHHHHHHHHHHHH
Q 003584 542 VGLLFACSHAGLAENARWYFESMDKVYGIKPGPDHYACMIDLLGRSGKLIEAKALLDQMVG-EPDATVWKALLSACR 617 (809)
Q Consensus 542 ~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~~~~~~~li~~~~~~g~~~eA~~~~~~m~~-~p~~~~~~~ll~a~~ 617 (809)
+.|..+|.+.+..++|+..|+.... -.+.+..+|+++.-.|...|+++.|.+.|.+... +||..+-..++..+.
T Consensus 459 ~NLGH~~Rkl~~~~eAI~~~q~aL~--l~~k~~~~~asig~iy~llgnld~Aid~fhKaL~l~p~n~~~~~lL~~ai 533 (611)
T KOG1173|consen 459 NNLGHAYRKLNKYEEAIDYYQKALL--LSPKDASTHASIGYIYHLLGNLDKAIDHFHKALALKPDNIFISELLKLAI 533 (611)
T ss_pred HhHHHHHHHHhhHHHHHHHHHHHHH--cCCCchhHHHHHHHHHHHhcChHHHHHHHHHHHhcCCccHHHHHHHHHHH
Confidence 5666666666666666666665543 2333555666666666666666666666666553 466555555555443
No 75
>COG3063 PilF Tfp pilus assembly protein PilF [Cell motility and secretion / Intracellular trafficking and secretion]
Probab=98.99 E-value=2.1e-08 Score=92.51 Aligned_cols=160 Identities=18% Similarity=0.239 Sum_probs=138.4
Q ss_pred hHHHHHHHhcCChHHHHHHHHHHHHCCCCCCH-HHHHHHHHHHHccCCHHHHHHHHHHhHHhhCCCCC-hHHHHHHHHHH
Q 003584 507 TALIMGCAQNGKGKEALQFYDQMLARGTKPDY-ITFVGLLFACSHAGLAENARWYFESMDKVYGIKPG-PDHYACMIDLL 584 (809)
Q Consensus 507 ~~li~~~~~~g~~~~A~~l~~~m~~~g~~pd~-~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~-~~~~~~li~~~ 584 (809)
..|.-+|.+.|+...|.+-+++.++. .|+. .++..+...|...|..+.|.+.|+... .+.|+ ..+.|....-+
T Consensus 39 lqLal~YL~~gd~~~A~~nlekAL~~--DPs~~~a~~~~A~~Yq~~Ge~~~A~e~YrkAl---sl~p~~GdVLNNYG~FL 113 (250)
T COG3063 39 LQLALGYLQQGDYAQAKKNLEKALEH--DPSYYLAHLVRAHYYQKLGENDLADESYRKAL---SLAPNNGDVLNNYGAFL 113 (250)
T ss_pred HHHHHHHHHCCCHHHHHHHHHHHHHh--CcccHHHHHHHHHHHHHcCChhhHHHHHHHHH---hcCCCccchhhhhhHHH
Confidence 44667888999999999999999884 5665 488888889999999999999998876 45564 46777888889
Q ss_pred hhcCCHHHHHHHHHhCcCCCC----HHHHHHHHHHHHhcCChhHHHHHHHHHhccCCCCCccHHhHhhhhhhcCChhHHH
Q 003584 585 GRSGKLIEAKALLDQMVGEPD----ATVWKALLSACRVHGDLELGERAANNLFELEPMNAMPYVQLSNMYSTAGKWEDAA 660 (809)
Q Consensus 585 ~~~g~~~eA~~~~~~m~~~p~----~~~~~~ll~a~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~ 660 (809)
+..|++++|...|++....|+ ..+|..++....+.|+.+.|+..+++.++++|+.+.+...+.....+.|++-+|.
T Consensus 114 C~qg~~~eA~q~F~~Al~~P~Y~~~s~t~eN~G~Cal~~gq~~~A~~~l~raL~~dp~~~~~~l~~a~~~~~~~~y~~Ar 193 (250)
T COG3063 114 CAQGRPEEAMQQFERALADPAYGEPSDTLENLGLCALKAGQFDQAEEYLKRALELDPQFPPALLELARLHYKAGDYAPAR 193 (250)
T ss_pred HhCCChHHHHHHHHHHHhCCCCCCcchhhhhhHHHHhhcCCchhHHHHHHHHHHhCcCCChHHHHHHHHHHhcccchHHH
Confidence 999999999999999887654 3489999988899999999999999999999999999999999999999999999
Q ss_pred HHHHHHHhCCC
Q 003584 661 RVRKLMKSRGI 671 (809)
Q Consensus 661 ~~~~~m~~~~~ 671 (809)
.+++.....+.
T Consensus 194 ~~~~~~~~~~~ 204 (250)
T COG3063 194 LYLERYQQRGG 204 (250)
T ss_pred HHHHHHHhccc
Confidence 99999887654
No 76
>KOG3616 consensus Selective LIM binding factor [Transcription]
Probab=98.99 E-value=1.1e-05 Score=85.79 Aligned_cols=106 Identities=18% Similarity=0.253 Sum_probs=53.4
Q ss_pred HHHHhcCChhHHHHHHHHHHHCCCCCCcccHHHHHHHhhcCCChHHHHHHHHHHHHhccCCchHHHHHHHHHHHhcCCHH
Q 003584 309 VGFARQGFHKEALSLFKKMHARDIKIDDFTYPSVLNCFASNIDLNNAKSVHSLIVKTGFEGYKFVNNALIDMYAKQGNLD 388 (809)
Q Consensus 309 ~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~i~~~~~~~g~~~~~~~~~~li~~y~~~g~~~ 388 (809)
.+-....++.+|+.+++.++.... -.--|..+..-|+..|+++.|+++|... ..++--|+||.+.|+++
T Consensus 740 eaai~akew~kai~ildniqdqk~--~s~yy~~iadhyan~~dfe~ae~lf~e~---------~~~~dai~my~k~~kw~ 808 (1636)
T KOG3616|consen 740 EAAIGAKEWKKAISILDNIQDQKT--ASGYYGEIADHYANKGDFEIAEELFTEA---------DLFKDAIDMYGKAGKWE 808 (1636)
T ss_pred HHHhhhhhhhhhHhHHHHhhhhcc--ccccchHHHHHhccchhHHHHHHHHHhc---------chhHHHHHHHhccccHH
Confidence 344555666666666666655422 2233455555566666666666555432 12344455566666666
Q ss_pred HHHHHHhhcCCC--CHhHHHHHHHHHHhcCCHHHHHHHH
Q 003584 389 CAFMVFNLMQDK--DVISWTSLITGCAYHGSYEEALKYF 425 (809)
Q Consensus 389 ~A~~~f~~~~~~--~~~~~~~li~~~~~~g~~~~A~~~~ 425 (809)
+|.++-.+...| ....|-+-..-+-.+|++.+|.+++
T Consensus 809 da~kla~e~~~~e~t~~~yiakaedldehgkf~eaeqly 847 (1636)
T KOG3616|consen 809 DAFKLAEECHGPEATISLYIAKAEDLDEHGKFAEAEQLY 847 (1636)
T ss_pred HHHHHHHHhcCchhHHHHHHHhHHhHHhhcchhhhhhee
Confidence 665555554433 2223333333344445555544444
No 77
>KOG1840 consensus Kinesin light chain [Cytoskeleton]
Probab=98.97 E-value=1.6e-07 Score=100.67 Aligned_cols=232 Identities=16% Similarity=0.184 Sum_probs=128.1
Q ss_pred HHHHHHHHhcCCHHHHHHHHhhcCC----------CCHh-HHHHHHHHHHhcCCHHHHHHHHHHHhhc---CCccC----
Q 003584 375 NALIDMYAKQGNLDCAFMVFNLMQD----------KDVI-SWTSLITGCAYHGSYEEALKYFSDMRIS---GICPD---- 436 (809)
Q Consensus 375 ~~li~~y~~~g~~~~A~~~f~~~~~----------~~~~-~~~~li~~~~~~g~~~~A~~~~~~m~~~---g~~p~---- 436 (809)
..|..+|...|+++.|..+|....+ +.+. ..+.+...|...+++++|..+|+++... ..-++
T Consensus 203 ~~La~~y~~~g~~e~A~~l~k~Al~~l~k~~G~~hl~va~~l~~~a~~y~~~~k~~eAv~ly~~AL~i~e~~~G~~h~~v 282 (508)
T KOG1840|consen 203 RNLAEMYAVQGRLEKAEPLCKQALRILEKTSGLKHLVVASMLNILALVYRSLGKYDEAVNLYEEALTIREEVFGEDHPAV 282 (508)
T ss_pred HHHHHHHHHhccHHHHHHHHHHHHHHHHHccCccCHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHhcCCCCHHH
Confidence 3355555555555555555544322 1111 1223445566666666666666666541 11122
Q ss_pred HhHHHHHHHHHhcccchhHHHHHHHHHHHhCCCCChhHHhHHHHHHHhcCCHHHHHHHHHhcC---CCCee-echHHHHH
Q 003584 437 HVVVSSILSACAELTVLEFGQQVHAVFLKSGGCSSLSVDNSLVLVYAKCGCINDANRVFDSMH---TRDVI-TWTALIMG 512 (809)
Q Consensus 437 ~~t~~~ll~a~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~y~k~g~~~~A~~~~~~~~---~~~~~-~~~~li~~ 512 (809)
..++..+-.+|.+.|++++|+..+..+.+ ++++.. .+++. ..+.++..
T Consensus 283 a~~l~nLa~ly~~~GKf~EA~~~~e~Al~----------------------------I~~~~~~~~~~~v~~~l~~~~~~ 334 (508)
T KOG1840|consen 283 AATLNNLAVLYYKQGKFAEAEEYCERALE----------------------------IYEKLLGASHPEVAAQLSELAAI 334 (508)
T ss_pred HHHHHHHHHHHhccCChHHHHHHHHHHHH----------------------------HHHHhhccChHHHHHHHHHHHHH
Confidence 22344444456666666666666554432 111110 11111 12333444
Q ss_pred HHhcCChHHHHHHHHHHHHC---CCCCCH----HHHHHHHHHHHccCCHHHHHHHHHHhHHhh-----CCCCC-hHHHHH
Q 003584 513 CAQNGKGKEALQFYDQMLAR---GTKPDY----ITFVGLLFACSHAGLAENARWYFESMDKVY-----GIKPG-PDHYAC 579 (809)
Q Consensus 513 ~~~~g~~~~A~~l~~~m~~~---g~~pd~----~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~-----~~~p~-~~~~~~ 579 (809)
+...+++++|..++++..+. -..++. .++..|...|.+.|++++|.++|+++.+.. +..+. ..+++.
T Consensus 335 ~~~~~~~Eea~~l~q~al~i~~~~~g~~~~~~a~~~~nl~~l~~~~gk~~ea~~~~k~ai~~~~~~~~~~~~~~~~~l~~ 414 (508)
T KOG1840|consen 335 LQSMNEYEEAKKLLQKALKIYLDAPGEDNVNLAKIYANLAELYLKMGKYKEAEELYKKAIQILRELLGKKDYGVGKPLNQ 414 (508)
T ss_pred HHHhcchhHHHHHHHHHHHHHHhhccccchHHHHHHHHHHHHHHHhcchhHHHHHHHHHHHHHHhcccCcChhhhHHHHH
Confidence 55555555555555544331 112222 256667777777777777777776665432 11222 345667
Q ss_pred HHHHHhhcCCHHHHHHHHHhCcC--------CCCHH-HHHHHHHHHHhcCChhHHHHHHHHHhc
Q 003584 580 MIDLLGRSGKLIEAKALLDQMVG--------EPDAT-VWKALLSACRVHGDLELGERAANNLFE 634 (809)
Q Consensus 580 li~~~~~~g~~~eA~~~~~~m~~--------~p~~~-~~~~ll~a~~~~g~~~~A~~~~~~~~~ 634 (809)
|...|.+.++.++|.++|.+... .|+.. +|..|...|...|+++.|+++.+++..
T Consensus 415 la~~~~~~k~~~~a~~l~~~~~~i~~~~g~~~~~~~~~~~nL~~~Y~~~g~~e~a~~~~~~~~~ 478 (508)
T KOG1840|consen 415 LAEAYEELKKYEEAEQLFEEAKDIMKLCGPDHPDVTYTYLNLAALYRAQGNYEAAEELEEKVLN 478 (508)
T ss_pred HHHHHHHhcccchHHHHHHHHHHHHHHhCCCCCchHHHHHHHHHHHHHcccHHHHHHHHHHHHH
Confidence 77778888888877777766542 35554 899999999999999999999988763
No 78
>PRK12370 invasion protein regulator; Provisional
Probab=98.97 E-value=4e-08 Score=110.60 Aligned_cols=210 Identities=12% Similarity=0.000 Sum_probs=162.6
Q ss_pred chhHHHHHHHHHHHhCCCCChhHHhHHHHHHHh---------cCCHHHHHHHHHhcCC---CCeeechHHHHHHHhcCCh
Q 003584 452 VLEFGQQVHAVFLKSGGCSSLSVDNSLVLVYAK---------CGCINDANRVFDSMHT---RDVITWTALIMGCAQNGKG 519 (809)
Q Consensus 452 ~~~~a~~~~~~~~~~g~~~~~~~~~~li~~y~k---------~g~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~g~~ 519 (809)
+++.|...+..+++.. +.+...+..+..+|.. .+++++|...+++..+ .+...|..+...+...|++
T Consensus 276 ~~~~A~~~~~~Al~ld-P~~a~a~~~La~~~~~~~~~g~~~~~~~~~~A~~~~~~Al~ldP~~~~a~~~lg~~~~~~g~~ 354 (553)
T PRK12370 276 SLQQALKLLTQCVNMS-PNSIAPYCALAECYLSMAQMGIFDKQNAMIKAKEHAIKATELDHNNPQALGLLGLINTIHSEY 354 (553)
T ss_pred HHHHHHHHHHHHHhcC-CccHHHHHHHHHHHHHHHHcCCcccchHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHccCH
Confidence 4567888888887764 3344556556555442 3458899999998773 3566788888889999999
Q ss_pred HHHHHHHHHHHHCCCCCCH-HHHHHHHHHHHccCCHHHHHHHHHHhHHhhCCCCChH-HHHHHHHHHhhcCCHHHHHHHH
Q 003584 520 KEALQFYDQMLARGTKPDY-ITFVGLLFACSHAGLAENARWYFESMDKVYGIKPGPD-HYACMIDLLGRSGKLIEAKALL 597 (809)
Q Consensus 520 ~~A~~l~~~m~~~g~~pd~-~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~~~-~~~~li~~~~~~g~~~eA~~~~ 597 (809)
++|+..|++..+. .|+. ..+..+..++...|++++|...++...+ +.|+.. .+..+...+...|++++|...+
T Consensus 355 ~~A~~~~~~Al~l--~P~~~~a~~~lg~~l~~~G~~~eAi~~~~~Al~---l~P~~~~~~~~~~~~~~~~g~~eeA~~~~ 429 (553)
T PRK12370 355 IVGSLLFKQANLL--SPISADIKYYYGWNLFMAGQLEEALQTINECLK---LDPTRAAAGITKLWITYYHTGIDDAIRLG 429 (553)
T ss_pred HHHHHHHHHHHHh--CCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHh---cCCCChhhHHHHHHHHHhccCHHHHHHHH
Confidence 9999999999985 5664 5788888899999999999999998874 456532 2334445567789999999999
Q ss_pred HhCcC--CCC-HHHHHHHHHHHHhcCChhHHHHHHHHHhccCCCCCccHHhHhhhhhhcCChhHHHHHHHHHHhC
Q 003584 598 DQMVG--EPD-ATVWKALLSACRVHGDLELGERAANNLFELEPMNAMPYVQLSNMYSTAGKWEDAARVRKLMKSR 669 (809)
Q Consensus 598 ~~m~~--~p~-~~~~~~ll~a~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~ 669 (809)
++... .|+ +..+..+..++...|+.++|...++++....|.+......+...|...| ++|...++.+.+.
T Consensus 430 ~~~l~~~~p~~~~~~~~la~~l~~~G~~~eA~~~~~~~~~~~~~~~~~~~~l~~~~~~~g--~~a~~~l~~ll~~ 502 (553)
T PRK12370 430 DELRSQHLQDNPILLSMQVMFLSLKGKHELARKLTKEISTQEITGLIAVNLLYAEYCQNS--ERALPTIREFLES 502 (553)
T ss_pred HHHHHhccccCHHHHHHHHHHHHhCCCHHHHHHHHHHhhhccchhHHHHHHHHHHHhccH--HHHHHHHHHHHHH
Confidence 88764 254 4467888888999999999999999998888888888888888888888 4888877776654
No 79
>KOG3617 consensus WD40 and TPR repeat-containing protein [General function prediction only]
Probab=98.97 E-value=4.4e-05 Score=82.68 Aligned_cols=374 Identities=15% Similarity=0.139 Sum_probs=180.2
Q ss_pred HHHHhccCChHHHHHHHHHHHHhCCCCchhHHHHHHHHHHhCCChHHHHHHHhccCCCCeeeHHHHHHHHHhcCChhHHH
Q 003584 242 LTACAAVSARDFGAQVHGCILSSGFEANVYVQSALIDMYAKCGDLDSARRLLEYSEIDNEVSWNSMIVGFARQGFHKEAL 321 (809)
Q Consensus 242 l~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~Li~~y~~~g~~~~A~~~f~~~~~~~~~~~~~li~~~~~~g~~~~A~ 321 (809)
-.-+...|+.+.|..+|..... |-++++..|-.|+.++|.++-++- .|......+...|-..|++.+|.
T Consensus 919 gqYlES~GemdaAl~~Y~~A~D---------~fs~VrI~C~qGk~~kAa~iA~es--gd~AAcYhlaR~YEn~g~v~~Av 987 (1416)
T KOG3617|consen 919 GQYLESVGEMDAALSFYSSAKD---------YFSMVRIKCIQGKTDKAARIAEES--GDKAACYHLARMYENDGDVVKAV 987 (1416)
T ss_pred HHHHhcccchHHHHHHHHHhhh---------hhhheeeEeeccCchHHHHHHHhc--ccHHHHHHHHHHhhhhHHHHHHH
Confidence 3344466777777777765432 445666666677777777766543 34455556666777777777777
Q ss_pred HHHHHHHHCCCCCCcccHHHHHHHhhcCCC---------------hHHHHHHHHHHHHhccCCchHHHHHHHHHHHhcCC
Q 003584 322 SLFKKMHARDIKIDDFTYPSVLNCFASNID---------------LNNAKSVHSLIVKTGFEGYKFVNNALIDMYAKQGN 386 (809)
Q Consensus 322 ~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~---------------~~~a~~i~~~~~~~g~~~~~~~~~~li~~y~~~g~ 386 (809)
.+|.+.+. |...|+.|-..+- .-.|...+++ .|.. ..--+..|-|.|.
T Consensus 988 ~FfTrAqa---------fsnAIRlcKEnd~~d~L~nlal~s~~~d~v~aArYyEe---~g~~-----~~~AVmLYHkAGm 1050 (1416)
T KOG3617|consen 988 KFFTRAQA---------FSNAIRLCKENDMKDRLANLALMSGGSDLVSAARYYEE---LGGY-----AHKAVMLYHKAGM 1050 (1416)
T ss_pred HHHHHHHH---------HHHHHHHHHhcCHHHHHHHHHhhcCchhHHHHHHHHHH---cchh-----hhHHHHHHHhhcc
Confidence 77766542 3333433322221 1112222221 1211 1223445777787
Q ss_pred HHHHHHHHhhcCC--------------CCHhHHHHHHHHHHhcCCHHHHHHHHHHHhhcCCccCHhHHHHHHHHHhcccc
Q 003584 387 LDCAFMVFNLMQD--------------KDVISWTSLITGCAYHGSYEEALKYFSDMRISGICPDHVVVSSILSACAELTV 452 (809)
Q Consensus 387 ~~~A~~~f~~~~~--------------~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~~~ 452 (809)
+.+|+++-=+-.+ .|+...+--..-++.+.++++|..++-..++ |.-.+..|...+
T Consensus 1051 ~~kALelAF~tqQf~aL~lIa~DLd~~sDp~ll~RcadFF~~~~qyekAV~lL~~ar~---------~~~AlqlC~~~n- 1120 (1416)
T KOG3617|consen 1051 IGKALELAFRTQQFSALDLIAKDLDAGSDPKLLRRCADFFENNQQYEKAVNLLCLARE---------FSGALQLCKNRN- 1120 (1416)
T ss_pred hHHHHHHHHhhcccHHHHHHHHhcCCCCCHHHHHHHHHHHHhHHHHHHHHHHHHHHHH---------HHHHHHHHhcCC-
Confidence 7777765322211 3555555556667777788888877765543 333444443322
Q ss_pred hhHHHHHHHHHH--HhCCCC---ChhHHhHHHHHHHhcCCHHHHHHHHHhcCCCCeeechHHHHHHHhcCChHH------
Q 003584 453 LEFGQQVHAVFL--KSGGCS---SLSVDNSLVLVYAKCGCINDANRVFDSMHTRDVITWTALIMGCAQNGKGKE------ 521 (809)
Q Consensus 453 ~~~a~~~~~~~~--~~g~~~---~~~~~~~li~~y~k~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~------ 521 (809)
+.-..++-+.|. +.+.++ -..+...+.+.+.++|.+..|-+-|.+...+ -.-+.++.+.|+.++
T Consensus 1121 v~vtee~aE~mTp~Kd~~~~e~~R~~vLeqvae~c~qQG~Yh~AtKKfTQAGdK-----l~AMraLLKSGdt~KI~FFAn 1195 (1416)
T KOG3617|consen 1121 VRVTEEFAELMTPTKDDMPNEQERKQVLEQVAELCLQQGAYHAATKKFTQAGDK-----LSAMRALLKSGDTQKIRFFAN 1195 (1416)
T ss_pred CchhHHHHHhcCcCcCCCccHHHHHHHHHHHHHHHHhccchHHHHHHHhhhhhH-----HHHHHHHHhcCCcceEEEEee
Confidence 222222222221 111111 1234455666777777777777666554321 011233333333332
Q ss_pred ----------HHHHHHHHHHCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHhHHhhCCCCChHHHHHHHHHHhhcCCHH
Q 003584 522 ----------ALQFYDQMLARGTKPDYITFVGLLFACSHAGLAENARWYFESMDKVYGIKPGPDHYACMIDLLGRSGKLI 591 (809)
Q Consensus 522 ----------A~~l~~~m~~~g~~pd~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~~~~~~~li~~~~~~g~~~ 591 (809)
|-.+++ ....+.|+.+...++.-|.+...++.--.+|....+ ...+.|..+-. ..|-++
T Consensus 1196 ~sRqkEiYImAANyLQ---tlDWq~~pq~mK~I~tFYTKgqafd~LanFY~~cAq-----iEiee~q~ydK---a~gAl~ 1264 (1416)
T KOG3617|consen 1196 TSRQKEIYIMAANYLQ---TLDWQDNPQTMKDIETFYTKGQAFDHLANFYKSCAQ-----IEIEELQTYDK---AMGALE 1264 (1416)
T ss_pred ccccceeeeehhhhhh---hcccccChHHHhhhHhhhhcchhHHHHHHHHHHHHH-----hhHHHHhhhhH---HhHHHH
Confidence 111111 112333444444444333333333322222221111 01112211111 124455
Q ss_pred HHHHHHHhCcCCCCHH-HHHHH----------HHHHHhcC-ChhHHHHHHHHHhccCCCCC------ccHHhHhhhhhhc
Q 003584 592 EAKALLDQMVGEPDAT-VWKAL----------LSACRVHG-DLELGERAANNLFELEPMNA------MPYVQLSNMYSTA 653 (809)
Q Consensus 592 eA~~~~~~m~~~p~~~-~~~~l----------l~a~~~~g-~~~~A~~~~~~~~~~~p~~~------~~~~~l~~~~~~~ 653 (809)
+|.+.+.+...+.+.. .++.| +....... |..+.+.-.+-+++ +|..+ ..|..|+..|...
T Consensus 1265 eA~kCl~ka~~k~~~~t~l~~Lq~~~a~vk~~l~~~q~~~eD~~~~i~qc~~lle-ep~ld~~Ir~~~~~a~lie~~v~~ 1343 (1416)
T KOG3617|consen 1265 EAAKCLLKAEQKNMSTTGLDALQEDLAKVKVQLRKLQIMKEDAADGIRQCTTLLE-EPILDDIIRCTRLFALLIEDHVSR 1343 (1416)
T ss_pred HHHHHHHHHHhhcchHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHhh-CcCCCCcchhHHHHHHHHHHHHhh
Confidence 6666655554332222 22222 22222211 34444444444443 33322 3577899999999
Q ss_pred CChhHHHHHHHHHHhCC
Q 003584 654 GKWEDAARVRKLMKSRG 670 (809)
Q Consensus 654 g~~~~A~~~~~~m~~~~ 670 (809)
.+|..|.+.++.|..+.
T Consensus 1344 k~y~~AyRal~el~~k~ 1360 (1416)
T KOG3617|consen 1344 KNYKPAYRALTELQKKV 1360 (1416)
T ss_pred hhccHHHHHHHHHhhcC
Confidence 99999999999998663
No 80
>KOG1174 consensus Anaphase-promoting complex (APC), subunit 7 [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=98.91 E-value=1.2e-05 Score=80.45 Aligned_cols=261 Identities=12% Similarity=0.014 Sum_probs=150.7
Q ss_pred chHHHHHHHHhhhcCCChhHHHHHhhhCCCCCCcccHHHHHHHHhhCCC-h-HH-------------HHHHHHHHHHCC-
Q 003584 167 NAFVVTGLVDMYAKCKCIFEAEYLFKMFPDGKNHVAWTTMITGYSQNGY-G-FK-------------AIECFRDMRVEG- 230 (809)
Q Consensus 167 ~~~~~~~li~~y~~~g~~~~A~~~f~~~~~~~~~~~~~~li~~~~~~g~-~-~~-------------A~~l~~~m~~~g- 230 (809)
+...-.-.+..|-..++-+.|.....+.|......--|.|+.-+.+.|. . ++ |++.+.-..+.+
T Consensus 96 ~~e~~r~~aecy~~~~n~~~Ai~~l~~~p~t~r~p~inlMla~l~~~g~r~~~~vl~ykevvrecp~aL~~i~~ll~l~v 175 (564)
T KOG1174|consen 96 DAEQRRRAAECYRQIGNTDMAIETLLQVPPTLRSPRINLMLARLQHHGSRHKEAVLAYKEVIRECPMALQVIEALLELGV 175 (564)
T ss_pred cHHHHHHHHHHHHHHccchHHHHHHhcCCccccchhHHHHHHHHHhccccccHHHHhhhHHHHhcchHHHHHHHHHHHhh
Confidence 4444455666777778888888888888874444445555544444331 1 11 112221122222
Q ss_pred --------------CCCCcchHHHHHHHHhc--cCChHHHHHHHHHHHH-hCCCCchhHHHHHHHHHHhCCChHHHHHHH
Q 003584 231 --------------VESNQFTFPSILTACAA--VSARDFGAQVHGCILS-SGFEANVYVQSALIDMYAKCGDLDSARRLL 293 (809)
Q Consensus 231 --------------~~p~~~t~~~ll~~~~~--~~~~~~a~~~~~~~~~-~g~~~~~~~~~~Li~~y~~~g~~~~A~~~f 293 (809)
+.|+..+...-+.+++. .++-..+-+.+-.+.. .-++.|+.....+.+.|...|+.++|...|
T Consensus 176 ~g~e~~S~~m~~~~~~~~~dwls~wika~Aq~~~~~hs~a~~t~l~le~~~~lr~NvhLl~~lak~~~~~Gdn~~a~~~F 255 (564)
T KOG1174|consen 176 NGNEINSLVMHAATVPDHFDWLSKWIKALAQMFNFKHSDASQTFLMLHDNTTLRCNEHLMMALGKCLYYNGDYFQAEDIF 255 (564)
T ss_pred cchhhhhhhhhheecCCCccHHHHHHHHHHHHHhcccchhhhHHHHHHhhccCCccHHHHHHHhhhhhhhcCchHHHHHH
Confidence 23444444444444432 2333333333333332 336778888889999999999999999999
Q ss_pred hccCCCCeeeHHHH---HHHHHhcCChhHHHHHHHHHHHCCCCCCcccHHHHHHHhhcCCChHHHHHHHHHHHHhccCCc
Q 003584 294 EYSEIDNEVSWNSM---IVGFARQGFHKEALSLFKKMHARDIKIDDFTYPSVLNCFASNIDLNNAKSVHSLIVKTGFEGY 370 (809)
Q Consensus 294 ~~~~~~~~~~~~~l---i~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~i~~~~~~~g~~~~ 370 (809)
++...-|+.+...| .-.+.+.|+++....+...+.... +-+...|..-+...-..++++.|..+-+..++.. +.+
T Consensus 256 e~~~~~dpy~i~~MD~Ya~LL~~eg~~e~~~~L~~~Lf~~~-~~ta~~wfV~~~~l~~~K~~~rAL~~~eK~I~~~-~r~ 333 (564)
T KOG1174|consen 256 SSTLCANPDNVEAMDLYAVLLGQEGGCEQDSALMDYLFAKV-KYTASHWFVHAQLLYDEKKFERALNFVEKCIDSE-PRN 333 (564)
T ss_pred HHHhhCChhhhhhHHHHHHHHHhccCHhhHHHHHHHHHhhh-hcchhhhhhhhhhhhhhhhHHHHHHHHHHHhccC-ccc
Confidence 87665444433332 333456788887777777765431 1122223333333445566667766666665543 222
Q ss_pred hHHHHHHHHHHHhcCCHHHHHHHHhhcCC---CCHhHHHHHHHHHHhcCCHHHHHHHHHHHh
Q 003584 371 KFVNNALIDMYAKQGNLDCAFMVFNLMQD---KDVISWTSLITGCAYHGSYEEALKYFSDMR 429 (809)
Q Consensus 371 ~~~~~~li~~y~~~g~~~~A~~~f~~~~~---~~~~~~~~li~~~~~~g~~~~A~~~~~~m~ 429 (809)
...+-.-...+...|+.++|.-.|+.... -+..+|..|+.+|...|.+.||.-+-+...
T Consensus 334 ~~alilKG~lL~~~~R~~~A~IaFR~Aq~Lap~rL~~Y~GL~hsYLA~~~~kEA~~~An~~~ 395 (564)
T KOG1174|consen 334 HEALILKGRLLIALERHTQAVIAFRTAQMLAPYRLEIYRGLFHSYLAQKRFKEANALANWTI 395 (564)
T ss_pred chHHHhccHHHHhccchHHHHHHHHHHHhcchhhHHHHHHHHHHHHhhchHHHHHHHHHHHH
Confidence 22333233456677888888888877553 367788888888888888888877665544
No 81
>PRK11189 lipoprotein NlpI; Provisional
Probab=98.90 E-value=3.4e-07 Score=94.16 Aligned_cols=187 Identities=12% Similarity=0.027 Sum_probs=124.9
Q ss_pred HHhcccchhHHHHHHHHHHHhCCCCChhHHhHHHHHHHhcCCHHHHHHHHHhcC--CC-CeeechHHHHHHHhcCChHHH
Q 003584 446 ACAELTVLEFGQQVHAVFLKSGGCSSLSVDNSLVLVYAKCGCINDANRVFDSMH--TR-DVITWTALIMGCAQNGKGKEA 522 (809)
Q Consensus 446 a~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~y~k~g~~~~A~~~~~~~~--~~-~~~~~~~li~~~~~~g~~~~A 522 (809)
.+...|+.+.|...+..+++.. +.+...++.+...|...|++++|.+.|++.. .| +..+|..+...+...|++++|
T Consensus 73 ~~~~~g~~~~A~~~~~~Al~l~-P~~~~a~~~lg~~~~~~g~~~~A~~~~~~Al~l~P~~~~a~~~lg~~l~~~g~~~eA 151 (296)
T PRK11189 73 LYDSLGLRALARNDFSQALALR-PDMADAYNYLGIYLTQAGNFDAAYEAFDSVLELDPTYNYAYLNRGIALYYGGRYELA 151 (296)
T ss_pred HHHHCCCHHHHHHHHHHHHHcC-CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHH
Confidence 3444555555555555554443 3456777888888999999999999998875 33 456788888889999999999
Q ss_pred HHHHHHHHHCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHhHHhhCCCCChHHHHHHHHHHhhcCCHH--HHHHHHHhC
Q 003584 523 LQFYDQMLARGTKPDYITFVGLLFACSHAGLAENARWYFESMDKVYGIKPGPDHYACMIDLLGRSGKLI--EAKALLDQM 600 (809)
Q Consensus 523 ~~l~~~m~~~g~~pd~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~~~~~~~li~~~~~~g~~~--eA~~~~~~m 600 (809)
++.|++..+. .|+..........+...++.++|...|..... ...|+...+ .++..+ .|++. ++.+.+.+.
T Consensus 152 ~~~~~~al~~--~P~~~~~~~~~~l~~~~~~~~~A~~~l~~~~~--~~~~~~~~~-~~~~~~--lg~~~~~~~~~~~~~~ 224 (296)
T PRK11189 152 QDDLLAFYQD--DPNDPYRALWLYLAESKLDPKQAKENLKQRYE--KLDKEQWGW-NIVEFY--LGKISEETLMERLKAG 224 (296)
T ss_pred HHHHHHHHHh--CCCCHHHHHHHHHHHccCCHHHHHHHHHHHHh--hCCccccHH-HHHHHH--ccCCCHHHHHHHHHhc
Confidence 9999999884 56544222222234556789999999976543 333433222 333333 44443 333333322
Q ss_pred cCC------CCHHHHHHHHHHHHhcCChhHHHHHHHHHhccCCCCC
Q 003584 601 VGE------PDATVWKALLSACRVHGDLELGERAANNLFELEPMNA 640 (809)
Q Consensus 601 ~~~------p~~~~~~~ll~a~~~~g~~~~A~~~~~~~~~~~p~~~ 640 (809)
... ....+|..+...+...|+.++|+..|+++++++|.+.
T Consensus 225 ~~~~~~l~~~~~ea~~~Lg~~~~~~g~~~~A~~~~~~Al~~~~~~~ 270 (296)
T PRK11189 225 ATDNTELAERLCETYFYLAKYYLSLGDLDEAAALFKLALANNVYNF 270 (296)
T ss_pred CCCcHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCchH
Confidence 111 2335899999999999999999999999999997543
No 82
>KOG2376 consensus Signal recognition particle, subunit Srp72 [Intracellular trafficking, secretion, and vesicular transport]
Probab=98.84 E-value=0.00012 Score=77.17 Aligned_cols=50 Identities=26% Similarity=0.306 Sum_probs=29.2
Q ss_pred HHHHhhcCCHHHHHHHHHhCcC--CCCHHHHHHHHHHHHhcCChhHHHHHHHH
Q 003584 581 IDLLGRSGKLIEAKALLDQMVG--EPDATVWKALLSACRVHGDLELGERAANN 631 (809)
Q Consensus 581 i~~~~~~g~~~eA~~~~~~m~~--~p~~~~~~~ll~a~~~~g~~~~A~~~~~~ 631 (809)
+..-.|.|+-++|..+++++.. ++|..+...++.+|+.- |.+.|+.+-.+
T Consensus 465 a~f~lr~G~~~ea~s~leel~k~n~~d~~~l~~lV~a~~~~-d~eka~~l~k~ 516 (652)
T KOG2376|consen 465 AEFKLRHGNEEEASSLLEELVKFNPNDTDLLVQLVTAYARL-DPEKAESLSKK 516 (652)
T ss_pred hHHHHhcCchHHHHHHHHHHHHhCCchHHHHHHHHHHHHhc-CHHHHHHHhhc
Confidence 3334455777777777776664 35555666666666654 35555554443
No 83
>KOG4162 consensus Predicted calmodulin-binding protein [Signal transduction mechanisms]
Probab=98.84 E-value=0.00011 Score=79.89 Aligned_cols=206 Identities=14% Similarity=0.094 Sum_probs=119.1
Q ss_pred HhccCCchHHHHHHHHHHHhcCCHHHHHHHHhhcCC---CCHhHHHHHHHHHHhcCCHHHHHHHHHHHhhcCCccCHhHH
Q 003584 364 KTGFEGYKFVNNALIDMYAKQGNLDCAFMVFNLMQD---KDVISWTSLITGCAYHGSYEEALKYFSDMRISGICPDHVVV 440 (809)
Q Consensus 364 ~~g~~~~~~~~~~li~~y~~~g~~~~A~~~f~~~~~---~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~ 440 (809)
...+..|..+|..|.-+...+|+++.+-+.|++... .....|+.+...|...|....|+.+.+.-....-.|+..+.
T Consensus 316 ~~~~qnd~ai~d~Lt~al~~~g~f~~lae~fE~~~~~~~~~~e~w~~~als~saag~~s~Av~ll~~~~~~~~~ps~~s~ 395 (799)
T KOG4162|consen 316 LKKFQNDAAIFDHLTFALSRCGQFEVLAEQFEQALPFSFGEHERWYQLALSYSAAGSDSKAVNLLRESLKKSEQPSDISV 395 (799)
T ss_pred HhhhcchHHHHHHHHHHHHHHHHHHHHHHHHHHHhHhhhhhHHHHHHHHHHHHHhccchHHHHHHHhhcccccCCCcchH
Confidence 344567888889898899999999999999988764 34567888888898889888888888876654334544444
Q ss_pred HHHHH-HH-hcccchhHHHHHHHHHHHhC--C--CCChhHHhHHHHHHHhc-----------CCHHHHHHHHHhcCCC--
Q 003584 441 SSILS-AC-AELTVLEFGQQVHAVFLKSG--G--CSSLSVDNSLVLVYAKC-----------GCINDANRVFDSMHTR-- 501 (809)
Q Consensus 441 ~~ll~-a~-~~~~~~~~a~~~~~~~~~~g--~--~~~~~~~~~li~~y~k~-----------g~~~~A~~~~~~~~~~-- 501 (809)
..+.. .| .+.+.+++|..+-..++... . ......+-.+.-+|... ....++.+.+++..+.
T Consensus 396 ~Lmasklc~e~l~~~eegldYA~kai~~~~~~~~~l~~~~~l~lGi~y~~~A~~a~~~seR~~~h~kslqale~av~~d~ 475 (799)
T KOG4162|consen 396 LLMASKLCIERLKLVEEGLDYAQKAISLLGGQRSHLKPRGYLFLGIAYGFQARQANLKSERDALHKKSLQALEEAVQFDP 475 (799)
T ss_pred HHHHHHHHHhchhhhhhHHHHHHHHHHHhhhhhhhhhhhHHHHHHHHHHhHhhcCCChHHHHHHHHHHHHHHHHHHhcCC
Confidence 33333 23 34466666666655555411 1 11222333333333321 1123445555554322
Q ss_pred -CeeechHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHhHHhhC
Q 003584 502 -DVITWTALIMGCAQNGKGKEALQFYDQMLARGTKPDYITFVGLLFACSHAGLAENARWYFESMDKVYG 569 (809)
Q Consensus 502 -~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~pd~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~ 569 (809)
|....--+.--|+..++.+.|++..++..+.+-.-+...+..+.-.++..+++.+|..+.+.....+|
T Consensus 476 ~dp~~if~lalq~A~~R~l~sAl~~~~eaL~l~~~~~~~~whLLALvlSa~kr~~~Al~vvd~al~E~~ 544 (799)
T KOG4162|consen 476 TDPLVIFYLALQYAEQRQLTSALDYAREALALNRGDSAKAWHLLALVLSAQKRLKEALDVVDAALEEFG 544 (799)
T ss_pred CCchHHHHHHHHHHHHHhHHHHHHHHHHHHHhcCCccHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHhh
Confidence 11111112223555666666666666666654444555555555555566666666665555444433
No 84
>KOG1156 consensus N-terminal acetyltransferase [Chromatin structure and dynamics]
Probab=98.83 E-value=3.3e-05 Score=81.96 Aligned_cols=95 Identities=14% Similarity=0.144 Sum_probs=66.6
Q ss_pred HHHHHHHHhhcCCHHHHHHHHHhCcCC-CCHH-HHHHHHHHHHhcCChhHHHHHHHHHhccCCCCCccHHhHhhhhhhcC
Q 003584 577 YACMIDLLGRSGKLIEAKALLDQMVGE-PDAT-VWKALLSACRVHGDLELGERAANNLFELEPMNAMPYVQLSNMYSTAG 654 (809)
Q Consensus 577 ~~~li~~~~~~g~~~eA~~~~~~m~~~-p~~~-~~~~ll~a~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g 654 (809)
+-.++..+-+.|+++.|..+++..... |..+ .|..-...+...|+.+.|-..++++.+++-.|...-..-++-..++.
T Consensus 374 ~y~laqh~D~~g~~~~A~~yId~AIdHTPTliEly~~KaRI~kH~G~l~eAa~~l~ea~elD~aDR~INsKcAKYmLrAn 453 (700)
T KOG1156|consen 374 LYFLAQHYDKLGDYEVALEYIDLAIDHTPTLIELYLVKARIFKHAGLLDEAAAWLDEAQELDTADRAINSKCAKYMLRAN 453 (700)
T ss_pred HHHHHHHHHHcccHHHHHHHHHHHhccCchHHHHHHHHHHHHHhcCChHHHHHHHHHHHhccchhHHHHHHHHHHHHHcc
Confidence 345677778888888888888877752 5544 55555677788888888888888888887555444334555666778
Q ss_pred ChhHHHHHHHHHHhCCC
Q 003584 655 KWEDAARVRKLMKSRGI 671 (809)
Q Consensus 655 ~~~~A~~~~~~m~~~~~ 671 (809)
+.++|.++.......|.
T Consensus 454 ~i~eA~~~~skFTr~~~ 470 (700)
T KOG1156|consen 454 EIEEAEEVLSKFTREGF 470 (700)
T ss_pred ccHHHHHHHHHhhhccc
Confidence 88888888777766553
No 85
>KOG1156 consensus N-terminal acetyltransferase [Chromatin structure and dynamics]
Probab=98.83 E-value=8.5e-05 Score=78.99 Aligned_cols=123 Identities=18% Similarity=0.102 Sum_probs=71.8
Q ss_pred HHHHHHHHHHccCCHHHHHHHHHHhHHhhCCCCCh-HHHHHHHHHHhhcCCHHHHHHHHHhCcC--CCCHHHHHHHHHHH
Q 003584 540 TFVGLLFACSHAGLAENARWYFESMDKVYGIKPGP-DHYACMIDLLGRSGKLIEAKALLDQMVG--EPDATVWKALLSAC 616 (809)
Q Consensus 540 t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~~-~~~~~li~~~~~~g~~~eA~~~~~~m~~--~p~~~~~~~ll~a~ 616 (809)
|+.-+...+-..|+++.|..+.+... +..|+. +.|..-..++..+|.+++|..++++... .||..+-.--..-.
T Consensus 373 t~y~laqh~D~~g~~~~A~~yId~AI---dHTPTliEly~~KaRI~kH~G~l~eAa~~l~ea~elD~aDR~INsKcAKYm 449 (700)
T KOG1156|consen 373 TLYFLAQHYDKLGDYEVALEYIDLAI---DHTPTLIELYLVKARIFKHAGLLDEAAAWLDEAQELDTADRAINSKCAKYM 449 (700)
T ss_pred HHHHHHHHHHHcccHHHHHHHHHHHh---ccCchHHHHHHHHHHHHHhcCChHHHHHHHHHHHhccchhHHHHHHHHHHH
Confidence 44455566777777777777777655 445553 5555556677777777777777776653 24444333333444
Q ss_pred HhcCChhHHHHHHHHHhccCCCCCc--------cHH--hHhhhhhhcCChhHHHHHHHHH
Q 003584 617 RVHGDLELGERAANNLFELEPMNAM--------PYV--QLSNMYSTAGKWEDAARVRKLM 666 (809)
Q Consensus 617 ~~~g~~~~A~~~~~~~~~~~p~~~~--------~~~--~l~~~~~~~g~~~~A~~~~~~m 666 (809)
.+.++.++|.+++.+...-+- +.. .|. -=+.+|.+.|+|.+|.+-+..+
T Consensus 450 LrAn~i~eA~~~~skFTr~~~-~~~~~L~~mqcmWf~~E~g~ay~r~~k~g~ALKkfh~i 508 (700)
T KOG1156|consen 450 LRANEIEEAEEVLSKFTREGF-GAVNNLAEMQCMWFQLEDGEAYLRQNKLGLALKKFHEI 508 (700)
T ss_pred HHccccHHHHHHHHHhhhccc-chhhhHHHhhhHHHhHhhhHHHHHHHHHHHHHHHHhhH
Confidence 556667777777666544332 111 111 2245677777777776655444
No 86
>KOG1127 consensus TPR repeat-containing protein [RNA processing and modification]
Probab=98.83 E-value=1.5e-05 Score=88.19 Aligned_cols=183 Identities=13% Similarity=-0.020 Sum_probs=111.5
Q ss_pred HHHHHhcCCChHHHHHHHHhcCCCCc---chHHHHHHHHHccCChhHHHHHhhhCCCC---CcchHHHHHHHHHcCCCch
Q 003584 42 ALVDFSNSGEIDEAGQLFEKMSDRDG---FTWNTMIAAYANSGRLREAKKLFNETPFK---NFFTWSSLIYGYSNYGLDI 115 (809)
Q Consensus 42 ll~~~~~~~~~~~a~~~~~~~~~~~~---~~~~~li~~~~~~g~~~~A~~~f~~~~~~---~~~~~~~li~~~~~~g~~~ 115 (809)
.+..|.+.. ...|...|-+..+-|+ ..|..|-.-|...-+...|.+.|+..-+- +..+|-....-|++...++
T Consensus 465 ~a~~~~rK~-~~~al~ali~alrld~~~apaf~~LG~iYrd~~Dm~RA~kCf~KAFeLDatdaeaaaa~adtyae~~~we 543 (1238)
T KOG1127|consen 465 VALGCMRKN-SALALHALIRALRLDVSLAPAFAFLGQIYRDSDDMKRAKKCFDKAFELDATDAEAAAASADTYAEESTWE 543 (1238)
T ss_pred HHHHHhhhh-HHHHHHHHHHHHhcccchhHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCchhhhhHHHHHHHhhccccHH
Confidence 344454433 5555555555544443 46777777787777777888888865543 4467778888888888888
Q ss_pred hHHHHHHHHHHcCC-CCCcccHHHHHHHhhcCCCchHHHHHHHHHHHhCCCCchHHHHHHHHhhhcCCChhHHHHHhhhC
Q 003584 116 EAFELFWQMQLEGY-RPSQYTLDNVLRLCSLKGLLQRGEQFHGYAIKTCFDLNAFVVTGLVDMYAKCKCIFEAEYLFKMF 194 (809)
Q Consensus 116 ~A~~~~~~m~~~g~-~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~y~~~g~~~~A~~~f~~~ 194 (809)
+|..+.-.--+... ..-...|..+--.+...+....+..-++...+.. +.|...|..|..+|.++|++..|.++|++.
T Consensus 544 ~a~~I~l~~~qka~a~~~k~nW~~rG~yyLea~n~h~aV~~fQsALR~d-PkD~n~W~gLGeAY~~sGry~~AlKvF~kA 622 (1238)
T KOG1127|consen 544 EAFEICLRAAQKAPAFACKENWVQRGPYYLEAHNLHGAVCEFQSALRTD-PKDYNLWLGLGEAYPESGRYSHALKVFTKA 622 (1238)
T ss_pred HHHHHHHHHhhhchHHHHHhhhhhccccccCccchhhHHHHHHHHhcCC-chhHHHHHHHHHHHHhcCceehHHHhhhhh
Confidence 88877333222110 0000111111112333344444444444444443 447788999999999999999999999887
Q ss_pred CCCCCcccHHHH---HHHHhhCCChHHHHHHHHHHH
Q 003584 195 PDGKNHVAWTTM---ITGYSQNGYGFKAIECFRDMR 227 (809)
Q Consensus 195 ~~~~~~~~~~~l---i~~~~~~g~~~~A~~l~~~m~ 227 (809)
.. -++.+|-.- ....+..|.+.+|++.+....
T Consensus 623 s~-LrP~s~y~~fk~A~~ecd~GkYkeald~l~~ii 657 (1238)
T KOG1127|consen 623 SL-LRPLSKYGRFKEAVMECDNGKYKEALDALGLII 657 (1238)
T ss_pred Hh-cCcHhHHHHHHHHHHHHHhhhHHHHHHHHHHHH
Confidence 76 444443322 223466788899988887765
No 87
>KOG3785 consensus Uncharacterized conserved protein [Function unknown]
Probab=98.82 E-value=4.5e-06 Score=81.64 Aligned_cols=189 Identities=14% Similarity=0.132 Sum_probs=119.2
Q ss_pred HHHHHHhcCCHHHHHHHHHhcCCCCeeechHHHHHHHhcCC-------hHHHHHHHHHHHHCCCCCCHH-HHHHHHHHHH
Q 003584 478 LVLVYAKCGCINDANRVFDSMHTRDVITWTALIMGCAQNGK-------GKEALQFYDQMLARGTKPDYI-TFVGLLFACS 549 (809)
Q Consensus 478 li~~y~k~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~-------~~~A~~l~~~m~~~g~~pd~~-t~~~ll~a~~ 549 (809)
|+--|.+.+++.+|..+..+.....+.-|-.-...++.+|+ ..-|.+.|+-.-+++..-|.+ --.++.+++.
T Consensus 291 L~iYyL~q~dVqeA~~L~Kdl~PttP~EyilKgvv~aalGQe~gSreHlKiAqqffqlVG~Sa~ecDTIpGRQsmAs~fF 370 (557)
T KOG3785|consen 291 LIIYYLNQNDVQEAISLCKDLDPTTPYEYILKGVVFAALGQETGSREHLKIAQQFFQLVGESALECDTIPGRQSMASYFF 370 (557)
T ss_pred heeeecccccHHHHHHHHhhcCCCChHHHHHHHHHHHHhhhhcCcHHHHHHHHHHHHHhcccccccccccchHHHHHHHH
Confidence 44557888899999888887764433322211112333332 344555565555556555554 3445666666
Q ss_pred ccCCHHHHHHHHHHhHHhhCCCCChHHHHHHHHHHhhcCCHHHHHHHHHhCcCC--CCHHHHHHHHHHH-HhcCChhHHH
Q 003584 550 HAGLAENARWYFESMDKVYGIKPGPDHYACMIDLLGRSGKLIEAKALLDQMVGE--PDATVWKALLSAC-RVHGDLELGE 626 (809)
Q Consensus 550 ~~g~~~~a~~~~~~m~~~~~~~p~~~~~~~li~~~~~~g~~~eA~~~~~~m~~~--p~~~~~~~ll~a~-~~~g~~~~A~ 626 (809)
-..++++.+.++.++..- -...|...+ .+..++...|...+|.++|-++..+ .|..+|.+++.-| ...+..+.|.
T Consensus 371 L~~qFddVl~YlnSi~sY-F~NdD~Fn~-N~AQAk~atgny~eaEelf~~is~~~ikn~~~Y~s~LArCyi~nkkP~lAW 448 (557)
T KOG3785|consen 371 LSFQFDDVLTYLNSIESY-FTNDDDFNL-NLAQAKLATGNYVEAEELFIRISGPEIKNKILYKSMLARCYIRNKKPQLAW 448 (557)
T ss_pred HHHHHHHHHHHHHHHHHH-hcCcchhhh-HHHHHHHHhcChHHHHHHHhhhcChhhhhhHHHHHHHHHHHHhcCCchHHH
Confidence 777888888888887642 333333333 4678888889999999998877642 4667777776555 4556677665
Q ss_pred HHHHHHhccC-CCCC-ccHHhHhhhhhhcCChhHHHHHHHHHHhCCC
Q 003584 627 RAANNLFELE-PMNA-MPYVQLSNMYSTAGKWEDAARVRKLMKSRGI 671 (809)
Q Consensus 627 ~~~~~~~~~~-p~~~-~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~ 671 (809)
.+ ++..+ |.+. .....+++-|.+++.+--|.+.|+.+...+.
T Consensus 449 ~~---~lk~~t~~e~fsLLqlIAn~CYk~~eFyyaaKAFd~lE~lDP 492 (557)
T KOG3785|consen 449 DM---MLKTNTPSERFSLLQLIANDCYKANEFYYAAKAFDELEILDP 492 (557)
T ss_pred HH---HHhcCCchhHHHHHHHHHHHHHHHHHHHHHHHhhhHHHccCC
Confidence 54 44443 3222 2344667888899988888888887765543
No 88
>PF12569 NARP1: NMDA receptor-regulated protein 1 ; InterPro: IPR021183 This group represents N-terminal acetyltransferase A (NatA) auxiliary subunit and represents a non-catalytic component of the NatA N-terminal acetyltransferase, which catalyzes acetylation of proteins beginning with Met-Ser, Met-Gly and Met-Ala. N-terminal acetylation plays a role in normal eukaryotic translation and processing, protect against proteolytic degradation and protein turnover. NAT1 anchors ARD1 and NAT5 to the ribosome and may present the N- terminal of nascent polypeptides for acetylation [], [].
Probab=98.79 E-value=3.1e-05 Score=84.41 Aligned_cols=45 Identities=27% Similarity=0.234 Sum_probs=40.3
Q ss_pred ChhHHHHHHHHHhccCCCCCccHHhHhhhhhhcCChhHHHHHHHH
Q 003584 621 DLELGERAANNLFELEPMNAMPYVQLSNMYSTAGKWEDAARVRKL 665 (809)
Q Consensus 621 ~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~ 665 (809)
=+++|.+.++-+.+..|++..+|..--.+|.+.|++--|.+.+.+
T Consensus 472 PLe~A~kfl~pL~~~a~~~~et~~laFeVy~Rk~K~LLaLqaL~k 516 (517)
T PF12569_consen 472 PLEEAMKFLKPLLELAPDNIETHLLAFEVYLRKGKYLLALQALKK 516 (517)
T ss_pred HHHHHHHHHHHHHHhCccchhhHHHHhHHHHhcCcHHHHHHHHHh
Confidence 378899999999999999999999999999999999998877653
No 89
>KOG1129 consensus TPR repeat-containing protein [General function prediction only]
Probab=98.77 E-value=2.9e-07 Score=88.85 Aligned_cols=223 Identities=15% Similarity=0.076 Sum_probs=173.3
Q ss_pred HHHHHHHHhcCCHHHHHHHHhhcCC--CCHhHHHHHHHHHHhcCCHHHHHHHHHHHhhcCCccCHhHHHH-HHHHHhccc
Q 003584 375 NALIDMYAKQGNLDCAFMVFNLMQD--KDVISWTSLITGCAYHGSYEEALKYFSDMRISGICPDHVVVSS-ILSACAELT 451 (809)
Q Consensus 375 ~~li~~y~~~g~~~~A~~~f~~~~~--~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~-ll~a~~~~~ 451 (809)
+-+...|.+.|.+.+|.+.|+.-.+ +-+.||-.|-..|.+..++..|+.+|.+-.+. .|-.+||.. +.+.+...+
T Consensus 227 ~Q~gkCylrLgm~r~AekqlqssL~q~~~~dTfllLskvY~ridQP~~AL~~~~~gld~--fP~~VT~l~g~ARi~eam~ 304 (478)
T KOG1129|consen 227 QQMGKCYLRLGMPRRAEKQLQSSLTQFPHPDTFLLLSKVYQRIDQPERALLVIGEGLDS--FPFDVTYLLGQARIHEAME 304 (478)
T ss_pred HHHHHHHHHhcChhhhHHHHHHHhhcCCchhHHHHHHHHHHHhccHHHHHHHHhhhhhc--CCchhhhhhhhHHHHHHHH
Confidence 5677888888999999888887654 56778888888999999999999999887764 677777654 445677788
Q ss_pred chhHHHHHHHHHHHhCCCCChhHHhHHHHHHHhcCCHHHHHHHHHhcCC---CCeeechHHHHHHHhcCChHHHHHHHHH
Q 003584 452 VLEFGQQVHAVFLKSGGCSSLSVDNSLVLVYAKCGCINDANRVFDSMHT---RDVITWTALIMGCAQNGKGKEALQFYDQ 528 (809)
Q Consensus 452 ~~~~a~~~~~~~~~~g~~~~~~~~~~li~~y~k~g~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~g~~~~A~~l~~~ 528 (809)
..+.+.++++.+.+.. +.++....++...|.-.++++.|...+.++.+ .+...|+.+.-+|...++++-++.-|++
T Consensus 305 ~~~~a~~lYk~vlk~~-~~nvEaiAcia~~yfY~~~PE~AlryYRRiLqmG~~speLf~NigLCC~yaqQ~D~~L~sf~R 383 (478)
T KOG1129|consen 305 QQEDALQLYKLVLKLH-PINVEAIACIAVGYFYDNNPEMALRYYRRILQMGAQSPELFCNIGLCCLYAQQIDLVLPSFQR 383 (478)
T ss_pred hHHHHHHHHHHHHhcC-CccceeeeeeeeccccCCChHHHHHHHHHHHHhcCCChHHHhhHHHHHHhhcchhhhHHHHHH
Confidence 8899999999888865 45666666777788888999999999988763 4667788888888889999999999999
Q ss_pred HHHCCCCCCHH--HHHHHHHHHHccCCHHHHHHHHHHhHHhhCCCCChHHHHHHHHHHhhcCCHHHHHHHHHhCcC
Q 003584 529 MLARGTKPDYI--TFVGLLFACSHAGLAENARWYFESMDKVYGIKPGPDHYACMIDLLGRSGKLIEAKALLDQMVG 602 (809)
Q Consensus 529 m~~~g~~pd~~--t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~~~~~~~li~~~~~~g~~~eA~~~~~~m~~ 602 (809)
.+..--.|+.. .|-.+.......|++..|.+.|+.... .-..+.+.++.|.-+-.|.|++++|..+++....
T Consensus 384 Alstat~~~~aaDvWYNlg~vaV~iGD~nlA~rcfrlaL~--~d~~h~ealnNLavL~~r~G~i~~Arsll~~A~s 457 (478)
T KOG1129|consen 384 ALSTATQPGQAADVWYNLGFVAVTIGDFNLAKRCFRLALT--SDAQHGEALNNLAVLAARSGDILGARSLLNAAKS 457 (478)
T ss_pred HHhhccCcchhhhhhhccceeEEeccchHHHHHHHHHHhc--cCcchHHHHHhHHHHHhhcCchHHHHHHHHHhhh
Confidence 88865556653 566677777778888888888876653 2333457778887778888888888888876653
No 90
>COG3063 PilF Tfp pilus assembly protein PilF [Cell motility and secretion / Intracellular trafficking and secretion]
Probab=98.70 E-value=4.5e-06 Score=77.39 Aligned_cols=168 Identities=17% Similarity=0.149 Sum_probs=114.5
Q ss_pred ChhHHhHHHHHHHhcCCHHHHHHHHHhcC---CCCeeechHHHHHHHhcCChHHHHHHHHHHHHCCCCCCH-HHHHHHHH
Q 003584 471 SLSVDNSLVLVYAKCGCINDANRVFDSMH---TRDVITWTALIMGCAQNGKGKEALQFYDQMLARGTKPDY-ITFVGLLF 546 (809)
Q Consensus 471 ~~~~~~~li~~y~k~g~~~~A~~~~~~~~---~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~pd~-~t~~~ll~ 546 (809)
+..++..+...|.+.|+.+.|.+-|++.. ..+-...|....-+|..|++++|...|++....-.-|.. .||..+.-
T Consensus 68 ~~~a~~~~A~~Yq~~Ge~~~A~e~YrkAlsl~p~~GdVLNNYG~FLC~qg~~~eA~q~F~~Al~~P~Y~~~s~t~eN~G~ 147 (250)
T COG3063 68 YYLAHLVRAHYYQKLGENDLADESYRKALSLAPNNGDVLNNYGAFLCAQGRPEEAMQQFERALADPAYGEPSDTLENLGL 147 (250)
T ss_pred cHHHHHHHHHHHHHcCChhhHHHHHHHHHhcCCCccchhhhhhHHHHhCCChHHHHHHHHHHHhCCCCCCcchhhhhhHH
Confidence 34445556666777777777777777654 334556666777777788888888888887764333332 47777777
Q ss_pred HHHccCCHHHHHHHHHHhHHhhCCCCC-hHHHHHHHHHHhhcCCHHHHHHHHHhCcC--CCCHHHHHHHHHHHHhcCChh
Q 003584 547 ACSHAGLAENARWYFESMDKVYGIKPG-PDHYACMIDLLGRSGKLIEAKALLDQMVG--EPDATVWKALLSACRVHGDLE 623 (809)
Q Consensus 547 a~~~~g~~~~a~~~~~~m~~~~~~~p~-~~~~~~li~~~~~~g~~~eA~~~~~~m~~--~p~~~~~~~ll~a~~~~g~~~ 623 (809)
+..+.|+.+.|..+|++..+ +.|+ ......|.......|++-.|..+++.... .++..+....+..-...||.+
T Consensus 148 Cal~~gq~~~A~~~l~raL~---~dp~~~~~~l~~a~~~~~~~~y~~Ar~~~~~~~~~~~~~A~sL~L~iriak~~gd~~ 224 (250)
T COG3063 148 CALKAGQFDQAEEYLKRALE---LDPQFPPALLELARLHYKAGDYAPARLYLERYQQRGGAQAESLLLGIRIAKRLGDRA 224 (250)
T ss_pred HHhhcCCchhHHHHHHHHHH---hCcCCChHHHHHHHHHHhcccchHHHHHHHHHHhcccccHHHHHHHHHHHHHhccHH
Confidence 77778888888888877663 2333 35566777777888888888888877664 356666666667777788887
Q ss_pred HHHHHHHHHhccCCCCCc
Q 003584 624 LGERAANNLFELEPMNAM 641 (809)
Q Consensus 624 ~A~~~~~~~~~~~p~~~~ 641 (809)
.+-+.-.++...-|.+..
T Consensus 225 ~a~~Y~~qL~r~fP~s~e 242 (250)
T COG3063 225 AAQRYQAQLQRLFPYSEE 242 (250)
T ss_pred HHHHHHHHHHHhCCCcHH
Confidence 777776677777776543
No 91
>KOG1127 consensus TPR repeat-containing protein [RNA processing and modification]
Probab=98.69 E-value=3.8e-05 Score=85.20 Aligned_cols=563 Identities=13% Similarity=0.004 Sum_probs=291.3
Q ss_pred hhHHHHHhhhCCCCCc---chHHHHHHHHHcCCCchhHHHHHHHHHHcCCCCC-cccHHHHHHHhhcCCCchHHHHHHHH
Q 003584 83 LREAKKLFNETPFKNF---FTWSSLIYGYSNYGLDIEAFELFWQMQLEGYRPS-QYTLDNVLRLCSLKGLLQRGEQFHGY 158 (809)
Q Consensus 83 ~~~A~~~f~~~~~~~~---~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~-~~t~~~ll~~~~~~~~~~~a~~~~~~ 158 (809)
...|...|-+....|+ ..|..|..-|...-+...|...|+...+-+ |+ ......+...++...+++.|..+.-.
T Consensus 474 ~~~al~ali~alrld~~~apaf~~LG~iYrd~~Dm~RA~kCf~KAFeLD--atdaeaaaa~adtyae~~~we~a~~I~l~ 551 (1238)
T KOG1127|consen 474 SALALHALIRALRLDVSLAPAFAFLGQIYRDSDDMKRAKKCFDKAFELD--ATDAEAAAASADTYAEESTWEEAFEICLR 551 (1238)
T ss_pred HHHHHHHHHHHHhcccchhHHHHHHHHHHHHHHHHHHHHHHHHHHhcCC--chhhhhHHHHHHHhhccccHHHHHHHHHH
Confidence 4455555544433333 468888888877777778888888887632 33 23455566788888888888887221
Q ss_pred HHHhC-CCCchHHHHHHHHhhhcCCChhHHHHHhhhCCC--CCCcccHHHHHHHHhhCCChHHHHHHHHHHHHCCCCCCc
Q 003584 159 AIKTC-FDLNAFVVTGLVDMYAKCKCIFEAEYLFKMFPD--GKNHVAWTTMITGYSQNGYGFKAIECFRDMRVEGVESNQ 235 (809)
Q Consensus 159 ~~~~g-~~~~~~~~~~li~~y~~~g~~~~A~~~f~~~~~--~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~ 235 (809)
.-+.. ...-..-|-.+--.|.+.++...|..-|+..-. +.|..+|..+..+|.+.|++..|+++|.+... +.|+.
T Consensus 552 ~~qka~a~~~k~nW~~rG~yyLea~n~h~aV~~fQsALR~dPkD~n~W~gLGeAY~~sGry~~AlKvF~kAs~--LrP~s 629 (1238)
T KOG1127|consen 552 AAQKAPAFACKENWVQRGPYYLEAHNLHGAVCEFQSALRTDPKDYNLWLGLGEAYPESGRYSHALKVFTKASL--LRPLS 629 (1238)
T ss_pred HhhhchHHHHHhhhhhccccccCccchhhHHHHHHHHhcCCchhHHHHHHHHHHHHhcCceehHHHhhhhhHh--cCcHh
Confidence 11111 001112222233356677888888888876543 25788999999999999999999999988765 34542
Q ss_pred chHHHHHHH--HhccCChHHHHHHHHHHHHhCCCCchhHHHHHHHHHH-------hCCChHHHHHHHhccCC--------
Q 003584 236 FTFPSILTA--CAAVSARDFGAQVHGCILSSGFEANVYVQSALIDMYA-------KCGDLDSARRLLEYSEI-------- 298 (809)
Q Consensus 236 ~t~~~ll~~--~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~Li~~y~-------~~g~~~~A~~~f~~~~~-------- 298 (809)
+|.....+ -+..|.+.++...++.++..- ..-....+.|...+. -.|-...|...|+.-.+
T Consensus 630 -~y~~fk~A~~ecd~GkYkeald~l~~ii~~~-s~e~~~q~gLaE~~ir~akd~~~~gf~~kavd~~eksie~f~~~l~h 707 (1238)
T KOG1127|consen 630 -KYGRFKEAVMECDNGKYKEALDALGLIIYAF-SLERTGQNGLAESVIRDAKDSAITGFQKKAVDFFEKSIESFIVSLIH 707 (1238)
T ss_pred -HHHHHHHHHHHHHhhhHHHHHHHHHHHHHHH-HHHHHhhhhHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHH
Confidence 33333222 346788888888888877542 111222233333333 23333444444432111
Q ss_pred ---CCeeeHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCcccHHHHHHHhhcCCChHHHHHHHHHHHH-----hccCCc
Q 003584 299 ---DNEVSWNSMIVGFARQGFHKEALSLFKKMHARDIKIDDFTYPSVLNCFASNIDLNNAKSVHSLIVK-----TGFEGY 370 (809)
Q Consensus 299 ---~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~i~~~~~~-----~g~~~~ 370 (809)
.+...|-.+ ..|..+|-... .+ .|+......+..-.-..+....-. ++-...+ ..+..+
T Consensus 708 ~~~~~~~~Wi~a----------sdac~~f~q~e-~~-~vn~h~l~il~~q~e~~~~l~~~d-~l~Lg~~c~~~hlsl~~~ 774 (1238)
T KOG1127|consen 708 SLQSDRLQWIVA----------SDACYIFSQEE-PS-IVNMHYLIILSKQLEKTGALKKND-LLFLGYECGIAHLSLAIH 774 (1238)
T ss_pred hhhhhHHHHHHH----------hHHHHHHHHhc-cc-chHHHHHHHHHHHHHhcccCcchh-HHHHHHHHhhHHHHHhhc
Confidence 111222222 12233333322 00 122111111111122222220000 1000001 111222
Q ss_pred hHHHHHHHHHHHh----cC----CHHHHHHHHhhcCC---CCHhHHHHHHHHHHhcCCHHHHHHHHHHHhhcCCccCHhH
Q 003584 371 KFVNNALIDMYAK----QG----NLDCAFMVFNLMQD---KDVISWTSLITGCAYHGSYEEALKYFSDMRISGICPDHVV 439 (809)
Q Consensus 371 ~~~~~~li~~y~~----~g----~~~~A~~~f~~~~~---~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t 439 (809)
...|..|...|.+ +| +...|...+....+ .+...||.|.-. ...|.+.-|...|-+-.... +-...+
T Consensus 775 ~~~WyNLGinylr~f~~l~et~~~~~~Ai~c~KkaV~L~ann~~~WnaLGVl-sg~gnva~aQHCfIks~~se-p~~~~~ 852 (1238)
T KOG1127|consen 775 MYPWYNLGINYLRYFLLLGETMKDACTAIRCCKKAVSLCANNEGLWNALGVL-SGIGNVACAQHCFIKSRFSE-PTCHCQ 852 (1238)
T ss_pred cchHHHHhHHHHHHHHHcCCcchhHHHHHHHHHHHHHHhhccHHHHHHHHHh-hccchhhhhhhhhhhhhhcc-ccchhh
Confidence 3333333333332 22 22345555554432 566777776554 55566666666665554432 234556
Q ss_pred HHHHHHHHhcccchhHHHHHHHHHHHhCCCCChhHHhHHHHHHHhcCCHHHHHHHHHhcC--------CCCeeechHHHH
Q 003584 440 VSSILSACAELTVLEFGQQVHAVFLKSGGCSSLSVDNSLVLVYAKCGCINDANRVFDSMH--------TRDVITWTALIM 511 (809)
Q Consensus 440 ~~~ll~a~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~y~k~g~~~~A~~~~~~~~--------~~~~~~~~~li~ 511 (809)
|..+--.|....+++.|.+.+...+... +.+..-|-...-.-...|+.-++..+|..-. -++..-|-.-..
T Consensus 853 W~NlgvL~l~n~d~E~A~~af~~~qSLd-P~nl~~WlG~Ali~eavG~ii~~~~lfaHs~el~~~~gka~~f~Yw~c~te 931 (1238)
T KOG1127|consen 853 WLNLGVLVLENQDFEHAEPAFSSVQSLD-PLNLVQWLGEALIPEAVGRIIERLILFAHSDELCSKEGKAKKFQYWLCATE 931 (1238)
T ss_pred eeccceeEEecccHHHhhHHHHhhhhcC-chhhHHHHHHHHhHHHHHHHHHHHHHHHhhHHhhccccccchhhHHHHHHH
Confidence 6666666777777888877777766543 2333333332333345566666666665421 134444444444
Q ss_pred HHHhcCChHHHHHHHHHHHH---------CCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHhHHhhCCCCChHHHH----
Q 003584 512 GCAQNGKGKEALQFYDQMLA---------RGTKPDYITFVGLLFACSHAGLAENARWYFESMDKVYGIKPGPDHYA---- 578 (809)
Q Consensus 512 ~~~~~g~~~~A~~l~~~m~~---------~g~~pd~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~~~~~~---- 578 (809)
-..++|+.++-+..-+++-. .|.+-+...|........+.+..++|.....+...-...+-+...|+
T Consensus 932 ~h~~Ng~~e~~I~t~~ki~sAs~al~~yf~~~p~~~fAy~~~gstlEhL~ey~~a~ela~RliglLe~k~d~sqynvak~ 1011 (1238)
T KOG1127|consen 932 IHLQNGNIEESINTARKISSASLALSYYFLGHPQLCFAYAANGSTLEHLEEYRAALELATRLIGLLELKLDESQYNVAKP 1011 (1238)
T ss_pred HHHhccchHHHHHHhhhhhhhHHHHHHHHhcCcchhHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhhh
Confidence 45566665554443333221 12333445777777777777777776666555432211222333333
Q ss_pred HHHHHHhhcCCHHHHHHHHHhCcCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHhccCCCCCc---cHHhHhhhhhhcCC
Q 003584 579 CMIDLLGRSGKLIEAKALLDQMVGEPDATVWKALLSACRVHGDLELGERAANNLFELEPMNAM---PYVQLSNMYSTAGK 655 (809)
Q Consensus 579 ~li~~~~~~g~~~eA~~~~~~m~~~p~~~~~~~ll~a~~~~g~~~~A~~~~~~~~~~~p~~~~---~~~~l~~~~~~~g~ 655 (809)
....++...|.++.|..-+.....+-|..+-.+-+.. .-.|+++.+++.|++++.+-.++.. ....++.....+|.
T Consensus 1012 ~~gRL~lslgefe~A~~a~~~~~~evdEdi~gt~l~l-Ffkndf~~sl~~fe~aLsis~se~d~vvLl~kva~~~g~~~~ 1090 (1238)
T KOG1127|consen 1012 DAGRLELSLGEFESAKKASWKEWMEVDEDIRGTDLTL-FFKNDFFSSLEFFEQALSISNSESDKVVLLCKVAVCMGLARQ 1090 (1238)
T ss_pred hhhhhhhhhcchhhHhhhhcccchhHHHHHhhhhHHH-HHHhHHHHHHHHHHHHhhhcccccchhhhhHHHHHHHhhccc
Confidence 2334455567777766666555444344333333332 4457788888888888776433322 23344555566777
Q ss_pred hhHHHHHHHHHHh
Q 003584 656 WEDAARVRKLMKS 668 (809)
Q Consensus 656 ~~~A~~~~~~m~~ 668 (809)
-+.|...+-+.+.
T Consensus 1091 k~~A~~lLfe~~~ 1103 (1238)
T KOG1127|consen 1091 KNDAQFLLFEVKS 1103 (1238)
T ss_pred chHHHHHHHHHHH
Confidence 7777766555543
No 92
>PF04733 Coatomer_E: Coatomer epsilon subunit; InterPro: IPR006822 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the epsilon subunit of the coatomer complex, which is involved in the regulation of intracellular protein trafficking between the endoplasmic reticulum and the Golgi complex []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006890 retrograde vesicle-mediated transport, Golgi to ER, 0030126 COPI vesicle coat; PDB: 3MV2_B 3MV3_F 3MKR_A.
Probab=98.69 E-value=1e-06 Score=89.31 Aligned_cols=153 Identities=16% Similarity=0.147 Sum_probs=75.7
Q ss_pred HHHHhcCCHHHHHHHHHhcCCCCeeechHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHc----cCCHH
Q 003584 480 LVYAKCGCINDANRVFDSMHTRDVITWTALIMGCAQNGKGKEALQFYDQMLARGTKPDYITFVGLLFACSH----AGLAE 555 (809)
Q Consensus 480 ~~y~k~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~pd~~t~~~ll~a~~~----~g~~~ 555 (809)
.+|...|++++|.+++... .+.......+..|.+.++++.|.+.++.|.+. ..|. +...+..++.. .+.+.
T Consensus 110 ~i~~~~~~~~~AL~~l~~~--~~lE~~al~Vqi~L~~~R~dlA~k~l~~~~~~--~eD~-~l~qLa~awv~l~~g~e~~~ 184 (290)
T PF04733_consen 110 TILFHEGDYEEALKLLHKG--GSLELLALAVQILLKMNRPDLAEKELKNMQQI--DEDS-ILTQLAEAWVNLATGGEKYQ 184 (290)
T ss_dssp HHHCCCCHHHHHHCCCTTT--TCHHHHHHHHHHHHHTT-HHHHHHHHHHHHCC--SCCH-HHHHHHHHHHHHHHTTTCCC
T ss_pred HHHHHcCCHHHHHHHHHcc--CcccHHHHHHHHHHHcCCHHHHHHHHHHHHhc--CCcH-HHHHHHHHHHHHHhCchhHH
Confidence 3455567777777666554 23334444566677777777777777777652 3333 23333333221 22455
Q ss_pred HHHHHHHHhHHhhCCCCChHHHHHHHHHHhhcCCHHHHHHHHHhCcC-CC-CHHHHHHHHHHHHhcCCh-hHHHHHHHHH
Q 003584 556 NARWYFESMDKVYGIKPGPDHYACMIDLLGRSGKLIEAKALLDQMVG-EP-DATVWKALLSACRVHGDL-ELGERAANNL 632 (809)
Q Consensus 556 ~a~~~~~~m~~~~~~~p~~~~~~~li~~~~~~g~~~eA~~~~~~m~~-~p-~~~~~~~ll~a~~~~g~~-~~A~~~~~~~ 632 (809)
+|..+|+++.+ ...+++...+.+..+....|+++||.+++.+... .| |+.++-.++......|+. +.+.+...++
T Consensus 185 ~A~y~f~El~~--~~~~t~~~lng~A~~~l~~~~~~eAe~~L~~al~~~~~~~d~LaNliv~~~~~gk~~~~~~~~l~qL 262 (290)
T PF04733_consen 185 DAFYIFEELSD--KFGSTPKLLNGLAVCHLQLGHYEEAEELLEEALEKDPNDPDTLANLIVCSLHLGKPTEAAERYLSQL 262 (290)
T ss_dssp HHHHHHHHHHC--CS--SHHHHHHHHHHHHHCT-HHHHHHHHHHHCCC-CCHHHHHHHHHHHHHHTT-TCHHHHHHHHHC
T ss_pred HHHHHHHHHHh--ccCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhccCCHHHHHHHHHHHHHhCCChhHHHHHHHHH
Confidence 66666666543 2334445555555555555555555555554433 12 233444454444444544 3344455555
Q ss_pred hccCCCC
Q 003584 633 FELEPMN 639 (809)
Q Consensus 633 ~~~~p~~ 639 (809)
....|++
T Consensus 263 ~~~~p~h 269 (290)
T PF04733_consen 263 KQSNPNH 269 (290)
T ss_dssp HHHTTTS
T ss_pred HHhCCCC
Confidence 5555543
No 93
>KOG3617 consensus WD40 and TPR repeat-containing protein [General function prediction only]
Probab=98.68 E-value=0.00016 Score=78.58 Aligned_cols=31 Identities=16% Similarity=0.173 Sum_probs=21.7
Q ss_pred HHHHHHHHHHhcCChhHHHHHHHHHhccCCC
Q 003584 608 VWKALLSACRVHGDLELGERAANNLFELEPM 638 (809)
Q Consensus 608 ~~~~ll~a~~~~g~~~~A~~~~~~~~~~~p~ 638 (809)
.+..|+..+....++..|-++++.+....|.
T Consensus 1332 ~~a~lie~~v~~k~y~~AyRal~el~~k~p~ 1362 (1416)
T KOG3617|consen 1332 LFALLIEDHVSRKNYKPAYRALTELQKKVPN 1362 (1416)
T ss_pred HHHHHHHHHHhhhhccHHHHHHHHHhhcCCc
Confidence 5666777777777777777777777666664
No 94
>PRK04841 transcriptional regulator MalT; Provisional
Probab=98.65 E-value=0.0013 Score=79.93 Aligned_cols=362 Identities=12% Similarity=0.003 Sum_probs=174.0
Q ss_pred HHHHHhCCChHHHHHHHhccCCCCeee--HHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCcccHHHHHHHhhcCCChHH
Q 003584 277 IDMYAKCGDLDSARRLLEYSEIDNEVS--WNSMIVGFARQGFHKEALSLFKKMHARDIKIDDFTYPSVLNCFASNIDLNN 354 (809)
Q Consensus 277 i~~y~~~g~~~~A~~~f~~~~~~~~~~--~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~ 354 (809)
...|...|++.+|..........+... ...........|+++.+...+..+.......+..........+...|++++
T Consensus 348 a~~~~~~g~~~~Al~~a~~a~d~~~~~~ll~~~a~~l~~~g~~~~l~~~l~~lp~~~~~~~~~l~~~~a~~~~~~g~~~~ 427 (903)
T PRK04841 348 AEAWLAQGFPSEAIHHALAAGDAQLLRDILLQHGWSLFNQGELSLLEECLNALPWEVLLENPRLVLLQAWLAQSQHRYSE 427 (903)
T ss_pred HHHHHHCCCHHHHHHHHHHCCCHHHHHHHHHHhHHHHHhcCChHHHHHHHHhCCHHHHhcCcchHHHHHHHHHHCCCHHH
Confidence 334555666666666555444332111 111122344567777666666655221111122222233334456677777
Q ss_pred HHHHHHHHHHhccC------Cc--hHHHHHHHHHHHhcCCHHHHHHHHhhcCC----CCH----hHHHHHHHHHHhcCCH
Q 003584 355 AKSVHSLIVKTGFE------GY--KFVNNALIDMYAKQGNLDCAFMVFNLMQD----KDV----ISWTSLITGCAYHGSY 418 (809)
Q Consensus 355 a~~i~~~~~~~g~~------~~--~~~~~~li~~y~~~g~~~~A~~~f~~~~~----~~~----~~~~~li~~~~~~g~~ 418 (809)
+...+..+...--. +. ......+...+...|++++|...+++..+ .+. ..++.+...+...|++
T Consensus 428 a~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~a~~~lg~~~~~~G~~ 507 (903)
T PRK04841 428 VNTLLARAEQELKDRNIELDGTLQAEFNALRAQVAINDGDPEEAERLAELALAELPLTWYYSRIVATSVLGEVHHCKGEL 507 (903)
T ss_pred HHHHHHHHHHhccccCcccchhHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHhcCCCccHHHHHHHHHHHHHHHHHcCCH
Confidence 77776665442100 01 11112223344556666666666655322 111 2234444455556666
Q ss_pred HHHHHHHHHHhhcCCccCHhHHHHHHHHHhcccchhHHHHHHHHHHHhCCC-CChhHHhHHHHHHHhcCCHHHHHHHHHh
Q 003584 419 EEALKYFSDMRISGICPDHVVVSSILSACAELTVLEFGQQVHAVFLKSGGC-SSLSVDNSLVLVYAKCGCINDANRVFDS 497 (809)
Q Consensus 419 ~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~~~~~~a~~~~~~~~~~g~~-~~~~~~~~li~~y~k~g~~~~A~~~~~~ 497 (809)
++|...+.+.....-. .|.. ........+...+...|++++|...+++
T Consensus 508 ~~A~~~~~~al~~~~~-------------------------------~g~~~~~~~~~~~la~~~~~~G~~~~A~~~~~~ 556 (903)
T PRK04841 508 ARALAMMQQTEQMARQ-------------------------------HDVYHYALWSLLQQSEILFAQGFLQAAYETQEK 556 (903)
T ss_pred HHHHHHHHHHHHHHhh-------------------------------hcchHHHHHHHHHHHHHHHHCCCHHHHHHHHHH
Confidence 6666666655432100 0000 0011222333344445555555544443
Q ss_pred cCC-------CC----eeechHHHHHHHhcCChHHHHHHHHHHHHC--CCCCC--HHHHHHHHHHHHccCCHHHHHHHHH
Q 003584 498 MHT-------RD----VITWTALIMGCAQNGKGKEALQFYDQMLAR--GTKPD--YITFVGLLFACSHAGLAENARWYFE 562 (809)
Q Consensus 498 ~~~-------~~----~~~~~~li~~~~~~g~~~~A~~l~~~m~~~--g~~pd--~~t~~~ll~a~~~~g~~~~a~~~~~ 562 (809)
... ++ ...+..+...+...|++++|...+++.... ...|. ..++..+.......|+.++|...++
T Consensus 557 al~~~~~~~~~~~~~~~~~~~~la~~~~~~G~~~~A~~~~~~al~~~~~~~~~~~~~~~~~la~~~~~~G~~~~A~~~l~ 636 (903)
T PRK04841 557 AFQLIEEQHLEQLPMHEFLLRIRAQLLWEWARLDEAEQCARKGLEVLSNYQPQQQLQCLAMLAKISLARGDLDNARRYLN 636 (903)
T ss_pred HHHHHHHhccccccHHHHHHHHHHHHHHHhcCHHHHHHHHHHhHHhhhccCchHHHHHHHHHHHHHHHcCCHHHHHHHHH
Confidence 220 00 011223333445556677776666665432 11121 1233334455666777777777666
Q ss_pred HhHHhhCCCCChHHH-----HHHHHHHhhcCCHHHHHHHHHhCcCC--CCH----HHHHHHHHHHHhcCChhHHHHHHHH
Q 003584 563 SMDKVYGIKPGPDHY-----ACMIDLLGRSGKLIEAKALLDQMVGE--PDA----TVWKALLSACRVHGDLELGERAANN 631 (809)
Q Consensus 563 ~m~~~~~~~p~~~~~-----~~li~~~~~~g~~~eA~~~~~~m~~~--p~~----~~~~~ll~a~~~~g~~~~A~~~~~~ 631 (809)
..............+ ......+...|+.+.|..++...... ... ..+..+..++...|+.++|...+++
T Consensus 637 ~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~l~~~~~~~~~~~~~~~~~~~~~a~~~~~~g~~~~A~~~l~~ 716 (903)
T PRK04841 637 RLENLLGNGRYHSDWIANADKVRLIYWQMTGDKEAAANWLRQAPKPEFANNHFLQGQWRNIARAQILLGQFDEAEIILEE 716 (903)
T ss_pred HHHHHHhcccccHhHhhHHHHHHHHHHHHCCCHHHHHHHHHhcCCCCCccchhHHHHHHHHHHHHHHcCCHHHHHHHHHH
Confidence 654321111110001 01123344567777777777665431 111 1134566667777888888888777
Q ss_pred HhccC------CCCCccHHhHhhhhhhcCChhHHHHHHHHHHhC
Q 003584 632 LFELE------PMNAMPYVQLSNMYSTAGKWEDAARVRKLMKSR 669 (809)
Q Consensus 632 ~~~~~------p~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~ 669 (809)
+++.. +....++..++.+|...|+.++|...+.+..+.
T Consensus 717 al~~~~~~g~~~~~a~~~~~la~a~~~~G~~~~A~~~L~~Al~l 760 (903)
T PRK04841 717 LNENARSLRLMSDLNRNLILLNQLYWQQGRKSEAQRVLLEALKL 760 (903)
T ss_pred HHHHHHHhCchHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Confidence 76542 112235667777888888888888888777654
No 95
>KOG1125 consensus TPR repeat-containing protein [General function prediction only]
Probab=98.65 E-value=4.8e-07 Score=94.44 Aligned_cols=216 Identities=16% Similarity=0.138 Sum_probs=149.3
Q ss_pred cchhHHHHHHHHHHHhCCCCChhHHhHHHHHHHhcCCHHHHHHHHHhcCC---CCeeechHHHHHHHhcCChHHHHHHHH
Q 003584 451 TVLEFGQQVHAVFLKSGGCSSLSVDNSLVLVYAKCGCINDANRVFDSMHT---RDVITWTALIMGCAQNGKGKEALQFYD 527 (809)
Q Consensus 451 ~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~y~k~g~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~g~~~~A~~l~~ 527 (809)
|++..|.-.++..++.. +.+...|.-|....+..++-..|+..+.+..+ .|....-+|...|...|.-.+|++.++
T Consensus 299 G~L~~A~LafEAAVkqd-P~haeAW~~LG~~qaENE~E~~ai~AL~rcl~LdP~NleaLmaLAVSytNeg~q~~Al~~L~ 377 (579)
T KOG1125|consen 299 GDLSEAALAFEAAVKQD-PQHAEAWQKLGITQAENENEQNAISALRRCLELDPTNLEALMALAVSYTNEGLQNQALKMLD 377 (579)
T ss_pred CCchHHHHHHHHHHhhC-hHHHHHHHHhhhHhhhccchHHHHHHHHHHHhcCCccHHHHHHHHHHHhhhhhHHHHHHHHH
Confidence 33444444444443333 33445555555555556666666666665553 234455556666777777777887777
Q ss_pred HHHHCCCCCCHHHHHHH--------HHHHHccCCHHHHHHHHHHhHHhhCCCCChHHHHHHHHHHhhcCCHHHHHHHHHh
Q 003584 528 QMLARGTKPDYITFVGL--------LFACSHAGLAENARWYFESMDKVYGIKPGPDHYACMIDLLGRSGKLIEAKALLDQ 599 (809)
Q Consensus 528 ~m~~~g~~pd~~t~~~l--------l~a~~~~g~~~~a~~~~~~m~~~~~~~p~~~~~~~li~~~~~~g~~~eA~~~~~~ 599 (809)
.-+... |...-...- -........+....++|-.+....+..+|+.++.+|.-+|--.|.++.|.+.|+.
T Consensus 378 ~Wi~~~--p~y~~l~~a~~~~~~~~~~s~~~~~~l~~i~~~fLeaa~~~~~~~DpdvQ~~LGVLy~ls~efdraiDcf~~ 455 (579)
T KOG1125|consen 378 KWIRNK--PKYVHLVSAGENEDFENTKSFLDSSHLAHIQELFLEAARQLPTKIDPDVQSGLGVLYNLSGEFDRAVDCFEA 455 (579)
T ss_pred HHHHhC--ccchhccccCccccccCCcCCCCHHHHHHHHHHHHHHHHhCCCCCChhHHhhhHHHHhcchHHHHHHHHHHH
Confidence 765421 110000000 0112222334455566666665557668889999999999999999999999998
Q ss_pred CcC-CC-CHHHHHHHHHHHHhcCChhHHHHHHHHHhccCCCCCccHHhHhhhhhhcCChhHHHHHHHHHHhC
Q 003584 600 MVG-EP-DATVWKALLSACRVHGDLELGERAANNLFELEPMNAMPYVQLSNMYSTAGKWEDAARVRKLMKSR 669 (809)
Q Consensus 600 m~~-~p-~~~~~~~ll~a~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~ 669 (809)
+.. +| |..+||-|+..+....+.++|+.+|++++++.|.-..+.+.|+-.|...|.++||.+.|-.....
T Consensus 456 AL~v~Pnd~~lWNRLGAtLAN~~~s~EAIsAY~rALqLqP~yVR~RyNlgIS~mNlG~ykEA~~hlL~AL~m 527 (579)
T KOG1125|consen 456 ALQVKPNDYLLWNRLGATLANGNRSEEAISAYNRALQLQPGYVRVRYNLGISCMNLGAYKEAVKHLLEALSM 527 (579)
T ss_pred HHhcCCchHHHHHHhhHHhcCCcccHHHHHHHHHHHhcCCCeeeeehhhhhhhhhhhhHHHHHHHHHHHHHh
Confidence 875 45 55699999999999999999999999999999999999999999999999999999998876543
No 96
>PF12569 NARP1: NMDA receptor-regulated protein 1 ; InterPro: IPR021183 This group represents N-terminal acetyltransferase A (NatA) auxiliary subunit and represents a non-catalytic component of the NatA N-terminal acetyltransferase, which catalyzes acetylation of proteins beginning with Met-Ser, Met-Gly and Met-Ala. N-terminal acetylation plays a role in normal eukaryotic translation and processing, protect against proteolytic degradation and protein turnover. NAT1 anchors ARD1 and NAT5 to the ribosome and may present the N- terminal of nascent polypeptides for acetylation [], [].
Probab=98.64 E-value=1.6e-05 Score=86.61 Aligned_cols=280 Identities=15% Similarity=0.099 Sum_probs=150.9
Q ss_pred HHhcCCHHHHHHHHhhcCC--CCHh-HHHHHHHHHHhcCCHHHHHHHHHHHhhcCCccCHhHHHHHHHHHh----c--cc
Q 003584 381 YAKQGNLDCAFMVFNLMQD--KDVI-SWTSLITGCAYHGSYEEALKYFSDMRISGICPDHVVVSSILSACA----E--LT 451 (809)
Q Consensus 381 y~~~g~~~~A~~~f~~~~~--~~~~-~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~----~--~~ 451 (809)
+...|++++|++.++.-.. .|.. ........+.+.|+.++|..+|..+.+. .|+...|...+..|. . ..
T Consensus 14 l~e~g~~~~AL~~L~~~~~~I~Dk~~~~E~rA~ll~kLg~~~eA~~~y~~Li~r--NPdn~~Yy~~L~~~~g~~~~~~~~ 91 (517)
T PF12569_consen 14 LEEAGDYEEALEHLEKNEKQILDKLAVLEKRAELLLKLGRKEEAEKIYRELIDR--NPDNYDYYRGLEEALGLQLQLSDE 91 (517)
T ss_pred HHHCCCHHHHHHHHHhhhhhCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH--CCCcHHHHHHHHHHHhhhcccccc
Confidence 4555666666666655433 2333 2334445566666666666666666665 355555555554443 1 11
Q ss_pred chhHHHHHHHHHHHhCCCCChhHHhHHHHHHHhcCCHH-HHHHHHHhcCCCCe-eechHHHHHHHhcCChHHHHHHHHHH
Q 003584 452 VLEFGQQVHAVFLKSGGCSSLSVDNSLVLVYAKCGCIN-DANRVFDSMHTRDV-ITWTALIMGCAQNGKGKEALQFYDQM 529 (809)
Q Consensus 452 ~~~~a~~~~~~~~~~g~~~~~~~~~~li~~y~k~g~~~-~A~~~~~~~~~~~~-~~~~~li~~~~~~g~~~~A~~l~~~m 529 (809)
..+.-.+++..+...- |.......+.-.+.....+. .+...+..+..+.+ .+++.+-..|....+..-...++...
T Consensus 92 ~~~~~~~~y~~l~~~y--p~s~~~~rl~L~~~~g~~F~~~~~~yl~~~l~KgvPslF~~lk~Ly~d~~K~~~i~~l~~~~ 169 (517)
T PF12569_consen 92 DVEKLLELYDELAEKY--PRSDAPRRLPLDFLEGDEFKERLDEYLRPQLRKGVPSLFSNLKPLYKDPEKAAIIESLVEEY 169 (517)
T ss_pred cHHHHHHHHHHHHHhC--ccccchhHhhcccCCHHHHHHHHHHHHHHHHhcCCchHHHHHHHHHcChhHHHHHHHHHHHH
Confidence 2344444555443322 11111111111111111121 12223333333443 23444444444333333334444443
Q ss_pred HHC----C----------CCCCH--HHHHHHHHHHHccCCHHHHHHHHHHhHHhhCCCCC-hHHHHHHHHHHhhcCCHHH
Q 003584 530 LAR----G----------TKPDY--ITFVGLLFACSHAGLAENARWYFESMDKVYGIKPG-PDHYACMIDLLGRSGKLIE 592 (809)
Q Consensus 530 ~~~----g----------~~pd~--~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~-~~~~~~li~~~~~~g~~~e 592 (809)
... | -.|.. .++.-+...|...|++++|.++.+...+ ..|+ ++.|..-...|-+.|++++
T Consensus 170 ~~~l~~~~~~~~~~~~~~~~p~~~lw~~~~lAqhyd~~g~~~~Al~~Id~aI~---htPt~~ely~~KarilKh~G~~~~ 246 (517)
T PF12569_consen 170 VNSLESNGSFSNGDDEEKEPPSTLLWTLYFLAQHYDYLGDYEKALEYIDKAIE---HTPTLVELYMTKARILKHAGDLKE 246 (517)
T ss_pred HHhhcccCCCCCccccccCCchHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHh---cCCCcHHHHHHHHHHHHHCCCHHH
Confidence 321 1 12333 2445556667788888888888887763 3565 5777778888888888888
Q ss_pred HHHHHHhCcC--CCCHHHHHHHHHHHHhcCChhHHHHHHHHHhccC--CCC-------CccHHhHhhhhhhcCChhHHHH
Q 003584 593 AKALLDQMVG--EPDATVWKALLSACRVHGDLELGERAANNLFELE--PMN-------AMPYVQLSNMYSTAGKWEDAAR 661 (809)
Q Consensus 593 A~~~~~~m~~--~p~~~~~~~ll~a~~~~g~~~~A~~~~~~~~~~~--p~~-------~~~~~~l~~~~~~~g~~~~A~~ 661 (809)
|.+.++.... ..|-.+-+-....+.+.|++++|+..+......+ |.. .....-.+.+|.+.|++..|.+
T Consensus 247 Aa~~~~~Ar~LD~~DRyiNsK~aKy~LRa~~~e~A~~~~~~Ftr~~~~~~~~L~~mQc~Wf~~e~a~a~~r~~~~~~ALk 326 (517)
T PF12569_consen 247 AAEAMDEARELDLADRYINSKCAKYLLRAGRIEEAEKTASLFTREDVDPLSNLNDMQCMWFETECAEAYLRQGDYGLALK 326 (517)
T ss_pred HHHHHHHHHhCChhhHHHHHHHHHHHHHCCCHHHHHHHHHhhcCCCCCcccCHHHHHHHHHHHHHHHHHHHHhhHHHHHH
Confidence 8888877663 2344555556666778888888888877665544 211 1123456778888888888887
Q ss_pred HHHHHH
Q 003584 662 VRKLMK 667 (809)
Q Consensus 662 ~~~~m~ 667 (809)
.+..+.
T Consensus 327 ~~~~v~ 332 (517)
T PF12569_consen 327 RFHAVL 332 (517)
T ss_pred HHHHHH
Confidence 776654
No 97
>cd05804 StaR_like StaR_like; a well-conserved protein found in bacteria, plants, and animals. A family member from Streptomyces toyocaensis, StaR is part of a gene cluster involved in the biosynthesis of glycopeptide antibiotics (GPAs), specifically A47934. It has been speculated that StaR could be a flavoprotein hydroxylating a tyrosine sidechain. Some family members have been annotated as proteins containing tetratricopeptide (TPR) repeats, which may at least indicate mostly alpha-helical secondary structure.
Probab=98.62 E-value=3.8e-05 Score=82.12 Aligned_cols=292 Identities=11% Similarity=-0.015 Sum_probs=165.1
Q ss_pred HHHHHHHHHhcCCHHHHHHHHhhcCC---CCH---hHHHHHHHHHHhcCCHHHHHHHHHHHhhcCCccCHh-HHHHHHHH
Q 003584 374 NNALIDMYAKQGNLDCAFMVFNLMQD---KDV---ISWTSLITGCAYHGSYEEALKYFSDMRISGICPDHV-VVSSILSA 446 (809)
Q Consensus 374 ~~~li~~y~~~g~~~~A~~~f~~~~~---~~~---~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~-t~~~ll~a 446 (809)
+..+...|...|+.+.+...+....+ ++. .........+...|++++|.+++++..+. .|+.. .+.. ...
T Consensus 9 ~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~a~~~~~~g~~~~A~~~~~~~l~~--~P~~~~a~~~-~~~ 85 (355)
T cd05804 9 HAAAALLLLLGGERPAAAAKAAAAAQALAARATERERAHVEALSAWIAGDLPKALALLEQLLDD--YPRDLLALKL-HLG 85 (355)
T ss_pred HHHHHHHHHhcCCcchHHHHHHHHHHHhccCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH--CCCcHHHHHH-hHH
Confidence 34444445555555555444443321 111 11222233456678888888888877765 34333 2221 111
Q ss_pred Hhc----ccchhHHHHHHHHHHHhCCCC-ChhHHhHHHHHHHhcCCHHHHHHHHHhcC---CCCeeechHHHHHHHhcCC
Q 003584 447 CAE----LTVLEFGQQVHAVFLKSGGCS-SLSVDNSLVLVYAKCGCINDANRVFDSMH---TRDVITWTALIMGCAQNGK 518 (809)
Q Consensus 447 ~~~----~~~~~~a~~~~~~~~~~g~~~-~~~~~~~li~~y~k~g~~~~A~~~~~~~~---~~~~~~~~~li~~~~~~g~ 518 (809)
+.. .+..+.+.+.... .....| .......+...+...|++++|.+.+++.. +.+...+..+...|...|+
T Consensus 86 ~~~~~~~~~~~~~~~~~l~~--~~~~~~~~~~~~~~~a~~~~~~G~~~~A~~~~~~al~~~p~~~~~~~~la~i~~~~g~ 163 (355)
T cd05804 86 AFGLGDFSGMRDHVARVLPL--WAPENPDYWYLLGMLAFGLEEAGQYDRAEEAARRALELNPDDAWAVHAVAHVLEMQGR 163 (355)
T ss_pred HHHhcccccCchhHHHHHhc--cCcCCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCcHHHHHHHHHHHHcCC
Confidence 222 3334444443332 111222 23344455667888899999988888776 2345567777888888999
Q ss_pred hHHHHHHHHHHHHCCC-CCCHH--HHHHHHHHHHccCCHHHHHHHHHHhHHhhCCCCChHHH-H--HHHHHHhhcCCHHH
Q 003584 519 GKEALQFYDQMLARGT-KPDYI--TFVGLLFACSHAGLAENARWYFESMDKVYGIKPGPDHY-A--CMIDLLGRSGKLIE 592 (809)
Q Consensus 519 ~~~A~~l~~~m~~~g~-~pd~~--t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~~~~~-~--~li~~~~~~g~~~e 592 (809)
+++|..++++...... .|+.. .+..+...+...|+.++|..+++.........+..... + .+...+...|..+.
T Consensus 164 ~~eA~~~l~~~l~~~~~~~~~~~~~~~~la~~~~~~G~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~g~~~~ 243 (355)
T cd05804 164 FKEGIAFMESWRDTWDCSSMLRGHNWWHLALFYLERGDYEAALAIYDTHIAPSAESDPALDLLDAASLLWRLELAGHVDV 243 (355)
T ss_pred HHHHHHHHHhhhhccCCCcchhHHHHHHHHHHHHHCCCHHHHHHHHHHHhccccCCChHHHHhhHHHHHHHHHhcCCCCh
Confidence 9999999888876421 12322 34467777888899999999998764321111212111 1 22333344443332
Q ss_pred HHHH---HHhCcCC-CC---HHHHHHHHHHHHhcCChhHHHHHHHHHhccC-C--------CCCccHHhHhhhhhhcCCh
Q 003584 593 AKAL---LDQMVGE-PD---ATVWKALLSACRVHGDLELGERAANNLFELE-P--------MNAMPYVQLSNMYSTAGKW 656 (809)
Q Consensus 593 A~~~---~~~m~~~-p~---~~~~~~ll~a~~~~g~~~~A~~~~~~~~~~~-p--------~~~~~~~~l~~~~~~~g~~ 656 (809)
+... ....... |. .........++...|+.+.|...++.+.... + .........+.++...|++
T Consensus 244 ~~~w~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~~~~~~l~A~~~~~~g~~ 323 (355)
T cd05804 244 GDRWEDLADYAAWHFPDHGLAFNDLHAALALAGAGDKDALDKLLAALKGRASSADDNKQPARDVGLPLAEALYAFAEGNY 323 (355)
T ss_pred HHHHHHHHHHHHhhcCcccchHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHhccCchhhhHHhhhHHHHHHHHHHHcCCH
Confidence 2222 1111111 11 1222356677788889999999888775422 1 1344566778888999999
Q ss_pred hHHHHHHHHHHhCC
Q 003584 657 EDAARVRKLMKSRG 670 (809)
Q Consensus 657 ~~A~~~~~~m~~~~ 670 (809)
++|.+.+......+
T Consensus 324 ~~A~~~L~~al~~a 337 (355)
T cd05804 324 ATALELLGPVRDDL 337 (355)
T ss_pred HHHHHHHHHHHHHH
Confidence 99999998877653
No 98
>KOG0548 consensus Molecular co-chaperone STI1 [Posttranslational modification, protein turnover, chaperones]
Probab=98.61 E-value=1.9e-05 Score=82.07 Aligned_cols=215 Identities=16% Similarity=0.144 Sum_probs=145.5
Q ss_pred HHHHHHhcccchhHHHHHHHHHHHhCCCCChhHHhHHHHHHHhcCCHHHHHHHHHhcCCCCe----------eechHHHH
Q 003584 442 SILSACAELTVLEFGQQVHAVFLKSGGCSSLSVDNSLVLVYAKCGCINDANRVFDSMHTRDV----------ITWTALIM 511 (809)
Q Consensus 442 ~ll~a~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~y~k~g~~~~A~~~~~~~~~~~~----------~~~~~li~ 511 (809)
.+.++.-+..+++.+.+.+...+... .+..-++....+|...|.+.+....-+...+..- .+...+..
T Consensus 229 ~lgnaaykkk~f~~a~q~y~~a~el~--~~it~~~n~aA~~~e~~~~~~c~~~c~~a~E~gre~rad~klIak~~~r~g~ 306 (539)
T KOG0548|consen 229 ELGNAAYKKKDFETAIQHYAKALELA--TDITYLNNIAAVYLERGKYAECIELCEKAVEVGRELRADYKLIAKALARLGN 306 (539)
T ss_pred HHHHHHHHhhhHHHHHHHHHHHHhHh--hhhHHHHHHHHHHHhccHHHHhhcchHHHHHHhHHHHHHHHHHHHHHHHhhh
Confidence 34455555666777777777777665 5555666677778777777766655554332211 11222444
Q ss_pred HHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHhHHhhCCCCChH-HHHHHHHHHhhcCCH
Q 003584 512 GCAQNGKGKEALQFYDQMLARGTKPDYITFVGLLFACSHAGLAENARWYFESMDKVYGIKPGPD-HYACMIDLLGRSGKL 590 (809)
Q Consensus 512 ~~~~~g~~~~A~~l~~~m~~~g~~pd~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~~~-~~~~li~~~~~~g~~ 590 (809)
+|.+.++++.|+..|++.+..-..||..+ +....+++....+... -+.|... -...=..-+.+.|++
T Consensus 307 a~~k~~~~~~ai~~~~kaLte~Rt~~~ls---------~lk~~Ek~~k~~e~~a---~~~pe~A~e~r~kGne~Fk~gdy 374 (539)
T KOG0548|consen 307 AYTKREDYEGAIKYYQKALTEHRTPDLLS---------KLKEAEKALKEAERKA---YINPEKAEEEREKGNEAFKKGDY 374 (539)
T ss_pred hhhhHHhHHHHHHHHHHHhhhhcCHHHHH---------HHHHHHHHHHHHHHHH---hhChhHHHHHHHHHHHHHhccCH
Confidence 66777888888888888766544444322 2223344444333221 3334331 111125667788999
Q ss_pred HHHHHHHHhCcC-CC-CHHHHHHHHHHHHhcCChhHHHHHHHHHhccCCCCCccHHhHhhhhhhcCChhHHHHHHHHHHh
Q 003584 591 IEAKALLDQMVG-EP-DATVWKALLSACRVHGDLELGERAANNLFELEPMNAMPYVQLSNMYSTAGKWEDAARVRKLMKS 668 (809)
Q Consensus 591 ~eA~~~~~~m~~-~p-~~~~~~~ll~a~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~ 668 (809)
.+|+..+.++.. .| |+..|.....+|.+.|++..|+.-.+..++++|+....|..=+-++....+|++|.+.++...+
T Consensus 375 ~~Av~~YteAIkr~P~Da~lYsNRAac~~kL~~~~~aL~Da~~~ieL~p~~~kgy~RKg~al~~mk~ydkAleay~eale 454 (539)
T KOG0548|consen 375 PEAVKHYTEAIKRDPEDARLYSNRAACYLKLGEYPEALKDAKKCIELDPNFIKAYLRKGAALRAMKEYDKALEAYQEALE 454 (539)
T ss_pred HHHHHHHHHHHhcCCchhHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 999999998875 24 6668999999999999999999999999999999999999888889999999999999988766
Q ss_pred CC
Q 003584 669 RG 670 (809)
Q Consensus 669 ~~ 670 (809)
.+
T Consensus 455 ~d 456 (539)
T KOG0548|consen 455 LD 456 (539)
T ss_pred cC
Confidence 53
No 99
>PF04733 Coatomer_E: Coatomer epsilon subunit; InterPro: IPR006822 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the epsilon subunit of the coatomer complex, which is involved in the regulation of intracellular protein trafficking between the endoplasmic reticulum and the Golgi complex []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006890 retrograde vesicle-mediated transport, Golgi to ER, 0030126 COPI vesicle coat; PDB: 3MV2_B 3MV3_F 3MKR_A.
Probab=98.59 E-value=9.6e-07 Score=89.44 Aligned_cols=149 Identities=15% Similarity=0.103 Sum_probs=116.4
Q ss_pred HHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHhHHhhCCCCChHH---HHHHHHHHhhcC
Q 003584 512 GCAQNGKGKEALQFYDQMLARGTKPDYITFVGLLFACSHAGLAENARWYFESMDKVYGIKPGPDH---YACMIDLLGRSG 588 (809)
Q Consensus 512 ~~~~~g~~~~A~~l~~~m~~~g~~pd~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~~~~---~~~li~~~~~~g 588 (809)
.+...|++++|++++++- .+.......+..+...++++.|.+.++.|. .+..|... ..+.+..+.-..
T Consensus 111 i~~~~~~~~~AL~~l~~~------~~lE~~al~Vqi~L~~~R~dlA~k~l~~~~---~~~eD~~l~qLa~awv~l~~g~e 181 (290)
T PF04733_consen 111 ILFHEGDYEEALKLLHKG------GSLELLALAVQILLKMNRPDLAEKELKNMQ---QIDEDSILTQLAEAWVNLATGGE 181 (290)
T ss_dssp HHCCCCHHHHHHCCCTTT------TCHHHHHHHHHHHHHTT-HHHHHHHHHHHH---CCSCCHHHHHHHHHHHHHHHTTT
T ss_pred HHHHcCCHHHHHHHHHcc------CcccHHHHHHHHHHHcCCHHHHHHHHHHHH---hcCCcHHHHHHHHHHHHHHhCch
Confidence 355679999999988652 345666778889999999999999999997 44455432 234444444445
Q ss_pred CHHHHHHHHHhCcCC--CCHHHHHHHHHHHHhcCChhHHHHHHHHHhccCCCCCccHHhHhhhhhhcCCh-hHHHHHHHH
Q 003584 589 KLIEAKALLDQMVGE--PDATVWKALLSACRVHGDLELGERAANNLFELEPMNAMPYVQLSNMYSTAGKW-EDAARVRKL 665 (809)
Q Consensus 589 ~~~eA~~~~~~m~~~--p~~~~~~~ll~a~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~-~~A~~~~~~ 665 (809)
.+.+|.-+|+++..+ +++.+.+.+..+....|++++|+.+++++++.+|.++.+...++-+....|+. +.+.+++..
T Consensus 182 ~~~~A~y~f~El~~~~~~t~~~lng~A~~~l~~~~~~eAe~~L~~al~~~~~~~d~LaNliv~~~~~gk~~~~~~~~l~q 261 (290)
T PF04733_consen 182 KYQDAFYIFEELSDKFGSTPKLLNGLAVCHLQLGHYEEAEELLEEALEKDPNDPDTLANLIVCSLHLGKPTEAAERYLSQ 261 (290)
T ss_dssp CCCHHHHHHHHHHCCS--SHHHHHHHHHHHHHCT-HHHHHHHHHHHCCC-CCHHHHHHHHHHHHHHTT-TCHHHHHHHHH
T ss_pred hHHHHHHHHHHHHhccCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhccCCHHHHHHHHHHHHHhCCChhHHHHHHHH
Confidence 799999999998865 67778999999999999999999999999999999999999999999999999 667788888
Q ss_pred HHhC
Q 003584 666 MKSR 669 (809)
Q Consensus 666 m~~~ 669 (809)
++..
T Consensus 262 L~~~ 265 (290)
T PF04733_consen 262 LKQS 265 (290)
T ss_dssp CHHH
T ss_pred HHHh
Confidence 7754
No 100
>KOG0624 consensus dsRNA-activated protein kinase inhibitor P58, contains TPR and DnaJ domains [Defense mechanisms]
Probab=98.54 E-value=6.7e-05 Score=73.40 Aligned_cols=208 Identities=12% Similarity=0.063 Sum_probs=120.3
Q ss_pred HHHHHHHhcCChhHHHHHHHHHHHCCCCCCcccHHHHHH---HhhcCCChHHHHHHHHHHHHhccCCchHHHH-HHHHHH
Q 003584 306 SMIVGFARQGFHKEALSLFKKMHARDIKIDDFTYPSVLN---CFASNIDLNNAKSVHSLIVKTGFEGYKFVNN-ALIDMY 381 (809)
Q Consensus 306 ~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~---~~~~~~~~~~a~~i~~~~~~~g~~~~~~~~~-~li~~y 381 (809)
-+...+...|++..|+.-|...++. |+..|..+.+ .|...|.-..|..-+..+++. .||-.... .-...+
T Consensus 43 ElGk~lla~~Q~sDALt~yHaAve~----dp~~Y~aifrRaT~yLAmGksk~al~Dl~rVlel--KpDF~~ARiQRg~vl 116 (504)
T KOG0624|consen 43 ELGKELLARGQLSDALTHYHAAVEG----DPNNYQAIFRRATVYLAMGKSKAALQDLSRVLEL--KPDFMAARIQRGVVL 116 (504)
T ss_pred HHHHHHHHhhhHHHHHHHHHHHHcC----CchhHHHHHHHHHHHhhhcCCccchhhHHHHHhc--CccHHHHHHHhchhh
Confidence 4778888899999999999988653 4444544443 566667666666666666554 34432211 122345
Q ss_pred HhcCCHHHHHHHHhhcCCCCHhHHHHHHHHHHhcCCHHHHHHHHHHHhhcCCccCHhHHHHHHHHHhcccchhHHHHHHH
Q 003584 382 AKQGNLDCAFMVFNLMQDKDVISWTSLITGCAYHGSYEEALKYFSDMRISGICPDHVVVSSILSACAELTVLEFGQQVHA 461 (809)
Q Consensus 382 ~~~g~~~~A~~~f~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~~~~~~a~~~~~ 461 (809)
.+.|.++.|..-|+.+.+.++.- +....++.+.- +.+++. .....+..+...|+...+.....
T Consensus 117 lK~Gele~A~~DF~~vl~~~~s~-~~~~eaqskl~-------~~~e~~---------~l~~ql~s~~~~GD~~~ai~~i~ 179 (504)
T KOG0624|consen 117 LKQGELEQAEADFDQVLQHEPSN-GLVLEAQSKLA-------LIQEHW---------VLVQQLKSASGSGDCQNAIEMIT 179 (504)
T ss_pred hhcccHHHHHHHHHHHHhcCCCc-chhHHHHHHHH-------hHHHHH---------HHHHHHHHHhcCCchhhHHHHHH
Confidence 67777777777777766532210 00001111100 111111 11222333444556666666666
Q ss_pred HHHHhCCCCChhHHhHHHHHHHhcCCHHHHHHHHHhcC---CCCeeechHHHHHHHhcCChHHHHHHHHHHHHCCCCCCH
Q 003584 462 VFLKSGGCSSLSVDNSLVLVYAKCGCINDANRVFDSMH---TRDVITWTALIMGCAQNGKGKEALQFYDQMLARGTKPDY 538 (809)
Q Consensus 462 ~~~~~g~~~~~~~~~~li~~y~k~g~~~~A~~~~~~~~---~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~pd~ 538 (809)
.+++.. +.|...+..-..+|...|++..|+.-+.... ..+....--+-..+...|+.+.++...++.++ +.||.
T Consensus 180 ~llEi~-~Wda~l~~~Rakc~i~~~e~k~AI~Dlk~askLs~DnTe~~ykis~L~Y~vgd~~~sL~~iRECLK--ldpdH 256 (504)
T KOG0624|consen 180 HLLEIQ-PWDASLRQARAKCYIAEGEPKKAIHDLKQASKLSQDNTEGHYKISQLLYTVGDAENSLKEIRECLK--LDPDH 256 (504)
T ss_pred HHHhcC-cchhHHHHHHHHHHHhcCcHHHHHHHHHHHHhccccchHHHHHHHHHHHhhhhHHHHHHHHHHHHc--cCcch
Confidence 665543 4566666777777888888888776655443 44555555566667778888888888887776 56776
Q ss_pred H
Q 003584 539 I 539 (809)
Q Consensus 539 ~ 539 (809)
.
T Consensus 257 K 257 (504)
T KOG0624|consen 257 K 257 (504)
T ss_pred h
Confidence 4
No 101
>KOG4340 consensus Uncharacterized conserved protein [Function unknown]
Probab=98.53 E-value=8.1e-05 Score=71.41 Aligned_cols=408 Identities=14% Similarity=0.081 Sum_probs=197.4
Q ss_pred HHHHHHHHhccCChHHHHHHHHHHHHhCCCCchhHHHHHHHHHHhCCChHHHHHHHhccCC--CCeeeHHH-HHHHHHhc
Q 003584 238 FPSILTACAAVSARDFGAQVHGCILSSGFEANVYVQSALIDMYAKCGDLDSARRLLEYSEI--DNEVSWNS-MIVGFARQ 314 (809)
Q Consensus 238 ~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~Li~~y~~~g~~~~A~~~f~~~~~--~~~~~~~~-li~~~~~~ 314 (809)
|.+++..+.+..++..+.+++..-.+.. +.+..-.+.|...|-...++..|...++++.. |...-|.. -...+.+.
T Consensus 13 ftaviy~lI~d~ry~DaI~~l~s~~Er~-p~~rAgLSlLgyCYY~~Q~f~~AA~CYeQL~ql~P~~~qYrlY~AQSLY~A 91 (459)
T KOG4340|consen 13 FTAVVYRLIRDARYADAIQLLGSELERS-PRSRAGLSLLGYCYYRLQEFALAAECYEQLGQLHPELEQYRLYQAQSLYKA 91 (459)
T ss_pred hHHHHHHHHHHhhHHHHHHHHHHHHhcC-ccchHHHHHHHHHHHHHHHHHHHHHHHHHHHhhChHHHHHHHHHHHHHHHh
Confidence 3444444444444555555444444332 22344445555555555666666655555442 21111211 13344556
Q ss_pred CChhHHHHHHHHHHHCCCCCCcccHHHHHHH--hhcCCChHHHHHHHHHHHHhccCCchHHHHHHHHHHHhcCCHHHHHH
Q 003584 315 GFHKEALSLFKKMHARDIKIDDFTYPSVLNC--FASNIDLNNAKSVHSLIVKTGFEGYKFVNNALIDMYAKQGNLDCAFM 392 (809)
Q Consensus 315 g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~--~~~~~~~~~a~~i~~~~~~~g~~~~~~~~~~li~~y~~~g~~~~A~~ 392 (809)
+.+.+|+.+...|.+. |+...-..-+.+ ....+++..++.+.++.... .+..+.+...-...+.|+.+.|.+
T Consensus 92 ~i~ADALrV~~~~~D~---~~L~~~~lqLqaAIkYse~Dl~g~rsLveQlp~e---n~Ad~~in~gCllykegqyEaAvq 165 (459)
T KOG4340|consen 92 CIYADALRVAFLLLDN---PALHSRVLQLQAAIKYSEGDLPGSRSLVEQLPSE---NEADGQINLGCLLYKEGQYEAAVQ 165 (459)
T ss_pred cccHHHHHHHHHhcCC---HHHHHHHHHHHHHHhcccccCcchHHHHHhccCC---CccchhccchheeeccccHHHHHH
Confidence 6677777777666432 111111111111 12334455555444443221 122233333344556677777777
Q ss_pred HHhhcCC----CCHhHHHHHHHHHHhcCCHHHHHHHHHHHhhcCCccCHhH-HHHHHHHHhcccchhHHHHHHHHHHHhC
Q 003584 393 VFNLMQD----KDVISWTSLITGCAYHGSYEEALKYFSDMRISGICPDHVV-VSSILSACAELTVLEFGQQVHAVFLKSG 467 (809)
Q Consensus 393 ~f~~~~~----~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t-~~~ll~a~~~~~~~~~a~~~~~~~~~~g 467 (809)
-|+...+ .....||.-+.- .+.|+++.|+++..++.++|++..+.. ......+ .....+.....++...+
T Consensus 166 kFqaAlqvsGyqpllAYniALaH-y~~~qyasALk~iSEIieRG~r~HPElgIGm~teg-iDvrsvgNt~~lh~Sal--- 240 (459)
T KOG4340|consen 166 KFQAALQVSGYQPLLAYNLALAH-YSSRQYASALKHISEIIERGIRQHPELGIGMTTEG-IDVRSVGNTLVLHQSAL--- 240 (459)
T ss_pred HHHHHHhhcCCCchhHHHHHHHH-HhhhhHHHHHHHHHHHHHhhhhcCCccCccceecc-CchhcccchHHHHHHHH---
Confidence 7766554 244555554433 345666777777777776665422110 0000000 00000000011111000
Q ss_pred CCCChhHHhHHHHHHHhcCCHHHHHHHHHhcCCC-----CeeechHHHHHHHhcCChHHHHHHHHHHHHCCCCC-CHHHH
Q 003584 468 GCSSLSVDNSLVLVYAKCGCINDANRVFDSMHTR-----DVITWTALIMGCAQNGKGKEALQFYDQMLARGTKP-DYITF 541 (809)
Q Consensus 468 ~~~~~~~~~~li~~y~k~g~~~~A~~~~~~~~~~-----~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p-d~~t~ 541 (809)
+..+|.-...+.+.|+++.|.+.+..|+.+ |++|...+.-. -..|++.+..+-++-+... .| -..||
T Consensus 241 ----~eAfNLKaAIeyq~~n~eAA~eaLtDmPPRaE~elDPvTLHN~Al~-n~~~~p~~g~~KLqFLL~~--nPfP~ETF 313 (459)
T KOG4340|consen 241 ----VEAFNLKAAIEYQLRNYEAAQEALTDMPPRAEEELDPVTLHNQALM-NMDARPTEGFEKLQFLLQQ--NPFPPETF 313 (459)
T ss_pred ----HHHhhhhhhhhhhcccHHHHHHHhhcCCCcccccCCchhhhHHHHh-cccCCccccHHHHHHHHhc--CCCChHHH
Confidence 112233334567889999999999999843 67776555322 2245555555555555553 44 34699
Q ss_pred HHHHHHHHccCCHHHHHHHHHHhHHhhCCCCChHHHHHHHHHHhh-cCCHHHHHHHHHhCcCCCCHHHHHHHHHH-HHhc
Q 003584 542 VGLLFACSHAGLAENARWYFESMDKVYGIKPGPDHYACMIDLLGR-SGKLIEAKALLDQMVGEPDATVWKALLSA-CRVH 619 (809)
Q Consensus 542 ~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~~~~~~~li~~~~~-~g~~~eA~~~~~~m~~~p~~~~~~~ll~a-~~~~ 619 (809)
..++-.|++..-++.|-.++.+=....-.-.+...|+ |++++.- .-..++|.+-++.....--...-..-+.. -.++
T Consensus 314 ANlLllyCKNeyf~lAADvLAEn~~lTyk~L~~Yly~-LLdaLIt~qT~pEea~KKL~~La~~l~~kLRklAi~vQe~r~ 392 (459)
T KOG4340|consen 314 ANLLLLYCKNEYFDLAADVLAENAHLTYKFLTPYLYD-LLDALITCQTAPEEAFKKLDGLAGMLTEKLRKLAIQVQEARH 392 (459)
T ss_pred HHHHHHHhhhHHHhHHHHHHhhCcchhHHHhhHHHHH-HHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 9999999999999998888743211000001223333 3344433 34667776665544311000000011111 1122
Q ss_pred CC----hhHHHHHHHHHhccCCCCCccHHhHhhhhhhcCChhHHHHHHHHHHh
Q 003584 620 GD----LELGERAANNLFELEPMNAMPYVQLSNMYSTAGKWEDAARVRKLMKS 668 (809)
Q Consensus 620 g~----~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~ 668 (809)
.+ ...+++-+++.+++.- .+...-+++|....++..+.+.|..-.+
T Consensus 393 ~~dd~a~R~ai~~Yd~~LE~YL---PVlMa~AkiyW~~~Dy~~vEk~Fr~Sve 442 (459)
T KOG4340|consen 393 NRDDEAIRKAVNEYDETLEKYL---PVLMAQAKIYWNLEDYPMVEKIFRKSVE 442 (459)
T ss_pred cccHHHHHHHHHHHHHHHHHHH---HHHHHHHHhhccccccHHHHHHHHHHHh
Confidence 22 2233344455555431 2455667889999999999999987654
No 102
>KOG0548 consensus Molecular co-chaperone STI1 [Posttranslational modification, protein turnover, chaperones]
Probab=98.52 E-value=0.0001 Score=76.92 Aligned_cols=239 Identities=14% Similarity=0.053 Sum_probs=145.0
Q ss_pred HHHHHHHhcCCHHHHHHHHhhcCC--CCHhHHHHHHHHHHhcCCHHHHHHHHHHHhhcCCccCHhHHHHHHHHHhcccch
Q 003584 376 ALIDMYAKQGNLDCAFMVFNLMQD--KDVISWTSLITGCAYHGSYEEALKYFSDMRISGICPDHVVVSSILSACAELTVL 453 (809)
Q Consensus 376 ~li~~y~~~g~~~~A~~~f~~~~~--~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~~~~ 453 (809)
.|.++.-+..+++.|.+-++...+ .+..-++....+|...|.+.+......+..+.|-. ...-|+.+-.+
T Consensus 229 ~lgnaaykkk~f~~a~q~y~~a~el~~~it~~~n~aA~~~e~~~~~~c~~~c~~a~E~gre-~rad~klIak~------- 300 (539)
T KOG0548|consen 229 ELGNAAYKKKDFETAIQHYAKALELATDITYLNNIAAVYLERGKYAECIELCEKAVEVGRE-LRADYKLIAKA------- 300 (539)
T ss_pred HHHHHHHHhhhHHHHHHHHHHHHhHhhhhHHHHHHHHHHHhccHHHHhhcchHHHHHHhHH-HHHHHHHHHHH-------
Confidence 344445555566666666555443 23333445555666666666666655554443311 00111111111
Q ss_pred hHHHHHHHHHHHhCCCCChhHHhHHHHHHHhcCCHHHHHHHHHhcCCCCeeechHHHHHHHhcCChHHHHHHHHHHHHCC
Q 003584 454 EFGQQVHAVFLKSGGCSSLSVDNSLVLVYAKCGCINDANRVFDSMHTRDVITWTALIMGCAQNGKGKEALQFYDQMLARG 533 (809)
Q Consensus 454 ~~a~~~~~~~~~~g~~~~~~~~~~li~~y~k~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g 533 (809)
...+...|.+.++++.|...|++...+... -....+....++++...+...-
T Consensus 301 ---------------------~~r~g~a~~k~~~~~~ai~~~~kaLte~Rt-----~~~ls~lk~~Ek~~k~~e~~a~-- 352 (539)
T KOG0548|consen 301 ---------------------LARLGNAYTKREDYEGAIKYYQKALTEHRT-----PDLLSKLKEAEKALKEAERKAY-- 352 (539)
T ss_pred ---------------------HHHhhhhhhhHHhHHHHHHHHHHHhhhhcC-----HHHHHHHHHHHHHHHHHHHHHh--
Confidence 111345677778888888888875522111 1112233444555555554443
Q ss_pred CCCCHH-HHHHHHHHHHccCCHHHHHHHHHHhHHhhCCCCChHHHHHHHHHHhhcCCHHHHHHHHHhCcC-CCCH-HHHH
Q 003584 534 TKPDYI-TFVGLLFACSHAGLAENARWYFESMDKVYGIKPGPDHYACMIDLLGRSGKLIEAKALLDQMVG-EPDA-TVWK 610 (809)
Q Consensus 534 ~~pd~~-t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~~~~~~~li~~~~~~g~~~eA~~~~~~m~~-~p~~-~~~~ 610 (809)
+.|+.. -...-.+.+.+.|++..|...|.++++. -+-|...|+.-.-+|.+.|.+.+|++=-+.... .|+. ..|.
T Consensus 353 ~~pe~A~e~r~kGne~Fk~gdy~~Av~~YteAIkr--~P~Da~lYsNRAac~~kL~~~~~aL~Da~~~ieL~p~~~kgy~ 430 (539)
T KOG0548|consen 353 INPEKAEEEREKGNEAFKKGDYPEAVKHYTEAIKR--DPEDARLYSNRAACYLKLGEYPEALKDAKKCIELDPNFIKAYL 430 (539)
T ss_pred hChhHHHHHHHHHHHHHhccCHHHHHHHHHHHHhc--CCchhHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCchHHHHHH
Confidence 345442 2223356678889999999999988764 244567888888899999999988887666653 3433 3555
Q ss_pred HHHHHHHhcCChhHHHHHHHHHhccCCCCCccHHhHhhhhhh
Q 003584 611 ALLSACRVHGDLELGERAANNLFELEPMNAMPYVQLSNMYST 652 (809)
Q Consensus 611 ~ll~a~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~ 652 (809)
-=+.++....+++.|.+.|++.++.+|++......+..++..
T Consensus 431 RKg~al~~mk~ydkAleay~eale~dp~~~e~~~~~~rc~~a 472 (539)
T KOG0548|consen 431 RKGAALRAMKEYDKALEAYQEALELDPSNAEAIDGYRRCVEA 472 (539)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhcCchhHHHHHHHHHHHHH
Confidence 556677777899999999999999999988777776666654
No 103
>PRK15359 type III secretion system chaperone protein SscB; Provisional
Probab=98.48 E-value=2.7e-06 Score=76.89 Aligned_cols=121 Identities=12% Similarity=0.017 Sum_probs=87.6
Q ss_pred HHHHHHHHCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHhHHhhCCCC-ChHHHHHHHHHHhhcCCHHHHHHHHHhCcC
Q 003584 524 QFYDQMLARGTKPDYITFVGLLFACSHAGLAENARWYFESMDKVYGIKP-GPDHYACMIDLLGRSGKLIEAKALLDQMVG 602 (809)
Q Consensus 524 ~l~~~m~~~g~~pd~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p-~~~~~~~li~~~~~~g~~~eA~~~~~~m~~ 602 (809)
.+|++.++ +.|+. +..+..++...|++++|...|+.... +.| +...|..+..++.+.|++++|...|++...
T Consensus 14 ~~~~~al~--~~p~~--~~~~g~~~~~~g~~~~A~~~~~~al~---~~P~~~~a~~~lg~~~~~~g~~~~A~~~y~~Al~ 86 (144)
T PRK15359 14 DILKQLLS--VDPET--VYASGYASWQEGDYSRAVIDFSWLVM---AQPWSWRAHIALAGTWMMLKEYTTAINFYGHALM 86 (144)
T ss_pred HHHHHHHH--cCHHH--HHHHHHHHHHcCCHHHHHHHHHHHHH---cCCCcHHHHHHHHHHHHHHhhHHHHHHHHHHHHh
Confidence 34555555 34554 44556677778888888888877663 344 556777788888888888888888887764
Q ss_pred --CCCHHHHHHHHHHHHhcCChhHHHHHHHHHhccCCCCCccHHhHhhhhh
Q 003584 603 --EPDATVWKALLSACRVHGDLELGERAANNLFELEPMNAMPYVQLSNMYS 651 (809)
Q Consensus 603 --~p~~~~~~~ll~a~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~ 651 (809)
+.++..|..+..++...|+.++|+..+++++++.|+++..+...+++..
T Consensus 87 l~p~~~~a~~~lg~~l~~~g~~~eAi~~~~~Al~~~p~~~~~~~~~~~~~~ 137 (144)
T PRK15359 87 LDASHPEPVYQTGVCLKMMGEPGLAREAFQTAIKMSYADASWSEIRQNAQI 137 (144)
T ss_pred cCCCCcHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHH
Confidence 3456688888888888888888888888888888888887777665543
No 104
>PF12854 PPR_1: PPR repeat
Probab=98.48 E-value=1.4e-07 Score=60.51 Aligned_cols=33 Identities=39% Similarity=0.630 Sum_probs=26.9
Q ss_pred cCCCCcchHHHHHHHHHccCChhHHHHHhhhCC
Q 003584 62 MSDRDGFTWNTMIAAYANSGRLREAKKLFNETP 94 (809)
Q Consensus 62 ~~~~~~~~~~~li~~~~~~g~~~~A~~~f~~~~ 94 (809)
+..||.++||+||++|++.|++++|.++|++|+
T Consensus 2 G~~Pd~~ty~~lI~~~Ck~G~~~~A~~l~~~M~ 34 (34)
T PF12854_consen 2 GCEPDVVTYNTLIDGYCKAGRVDEAFELFDEMK 34 (34)
T ss_pred CCCCcHhHHHHHHHHHHHCCCHHHHHHHHHhCc
Confidence 567888888888888888888888888888874
No 105
>PRK04841 transcriptional regulator MalT; Provisional
Probab=98.46 E-value=0.0017 Score=79.03 Aligned_cols=87 Identities=13% Similarity=0.090 Sum_probs=49.9
Q ss_pred HHHHhcCCHHHHHHHHHhcCCCCee-e------chHHHHHHHhcCChHHHHHHHHHHHHC----CCCCCH-HHHHHHHHH
Q 003584 480 LVYAKCGCINDANRVFDSMHTRDVI-T------WTALIMGCAQNGKGKEALQFYDQMLAR----GTKPDY-ITFVGLLFA 547 (809)
Q Consensus 480 ~~y~k~g~~~~A~~~~~~~~~~~~~-~------~~~li~~~~~~g~~~~A~~l~~~m~~~----g~~pd~-~t~~~ll~a 547 (809)
..+...|+.+.|.+.+.....+... . +..+..++...|++++|..++++.... |..++. .+...+..+
T Consensus 661 ~~~~~~g~~~~A~~~l~~~~~~~~~~~~~~~~~~~~~a~~~~~~g~~~~A~~~l~~al~~~~~~g~~~~~a~~~~~la~a 740 (903)
T PRK04841 661 IYWQMTGDKEAAANWLRQAPKPEFANNHFLQGQWRNIARAQILLGQFDEAEIILEELNENARSLRLMSDLNRNLILLNQL 740 (903)
T ss_pred HHHHHCCCHHHHHHHHHhcCCCCCccchhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhCchHHHHHHHHHHHHH
Confidence 3344567777777777665533211 1 234455566777777777777776542 222222 244455556
Q ss_pred HHccCCHHHHHHHHHHhHH
Q 003584 548 CSHAGLAENARWYFESMDK 566 (809)
Q Consensus 548 ~~~~g~~~~a~~~~~~m~~ 566 (809)
+...|+.++|...+.+..+
T Consensus 741 ~~~~G~~~~A~~~L~~Al~ 759 (903)
T PRK04841 741 YWQQGRKSEAQRVLLEALK 759 (903)
T ss_pred HHHcCCHHHHHHHHHHHHH
Confidence 6666777777766666554
No 106
>cd05804 StaR_like StaR_like; a well-conserved protein found in bacteria, plants, and animals. A family member from Streptomyces toyocaensis, StaR is part of a gene cluster involved in the biosynthesis of glycopeptide antibiotics (GPAs), specifically A47934. It has been speculated that StaR could be a flavoprotein hydroxylating a tyrosine sidechain. Some family members have been annotated as proteins containing tetratricopeptide (TPR) repeats, which may at least indicate mostly alpha-helical secondary structure.
Probab=98.46 E-value=0.00037 Score=74.48 Aligned_cols=192 Identities=11% Similarity=0.042 Sum_probs=93.0
Q ss_pred cHHHHHHHHhhCCChHHHHHHHHHHHHCCC-CCCcchHH-HHHHHHhccCChHHHHHHHHHHHHhCCCCchhHHH---HH
Q 003584 202 AWTTMITGYSQNGYGFKAIECFRDMRVEGV-ESNQFTFP-SILTACAAVSARDFGAQVHGCILSSGFEANVYVQS---AL 276 (809)
Q Consensus 202 ~~~~li~~~~~~g~~~~A~~l~~~m~~~g~-~p~~~t~~-~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~---~L 276 (809)
.|..+...+...|+.+++...+....+... .++..... .....+...|++++|..++...++.. +.|...+. .+
T Consensus 8 a~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~a~~~~~~g~~~~A~~~~~~~l~~~-P~~~~a~~~~~~~ 86 (355)
T cd05804 8 GHAAAALLLLLGGERPAAAAKAAAAAQALAARATERERAHVEALSAWIAGDLPKALALLEQLLDDY-PRDLLALKLHLGA 86 (355)
T ss_pred HHHHHHHHHHhcCCcchHHHHHHHHHHHhccCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHC-CCcHHHHHHhHHH
Confidence 444455555555666665555544433211 11111111 11112335566666666666666553 22333332 11
Q ss_pred HHHHHhCCChHHHHHHHhccCCCCee---eHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCcccHHHHHHHhhcCCChH
Q 003584 277 IDMYAKCGDLDSARRLLEYSEIDNEV---SWNSMIVGFARQGFHKEALSLFKKMHARDIKIDDFTYPSVLNCFASNIDLN 353 (809)
Q Consensus 277 i~~y~~~g~~~~A~~~f~~~~~~~~~---~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~ 353 (809)
.......+..+.+.+.++.....+.. ....+...+...|++++|...+++..+..
T Consensus 87 ~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~a~~~~~~G~~~~A~~~~~~al~~~---------------------- 144 (355)
T cd05804 87 FGLGDFSGMRDHVARVLPLWAPENPDYWYLLGMLAFGLEEAGQYDRAEEAARRALELN---------------------- 144 (355)
T ss_pred HHhcccccCchhHHHHHhccCcCCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC----------------------
Confidence 11222234444555555432222222 12233345556666666666666665542
Q ss_pred HHHHHHHHHHHhccCCchHHHHHHHHHHHhcCCHHHHHHHHhhcCCC-----CH--hHHHHHHHHHHhcCCHHHHHHHHH
Q 003584 354 NAKSVHSLIVKTGFEGYKFVNNALIDMYAKQGNLDCAFMVFNLMQDK-----DV--ISWTSLITGCAYHGSYEEALKYFS 426 (809)
Q Consensus 354 ~a~~i~~~~~~~g~~~~~~~~~~li~~y~~~g~~~~A~~~f~~~~~~-----~~--~~~~~li~~~~~~g~~~~A~~~~~ 426 (809)
+.+...+..+...|...|++++|...+++..+. +. ..|..+...+...|++++|+.+++
T Consensus 145 --------------p~~~~~~~~la~i~~~~g~~~eA~~~l~~~l~~~~~~~~~~~~~~~~la~~~~~~G~~~~A~~~~~ 210 (355)
T cd05804 145 --------------PDDAWAVHAVAHVLEMQGRFKEGIAFMESWRDTWDCSSMLRGHNWWHLALFYLERGDYEAALAIYD 210 (355)
T ss_pred --------------CCCcHHHHHHHHHHHHcCCHHHHHHHHHhhhhccCCCcchhHHHHHHHHHHHHHCCCHHHHHHHHH
Confidence 222334455555666666666666666654431 11 234456667777777777777777
Q ss_pred HHhh
Q 003584 427 DMRI 430 (809)
Q Consensus 427 ~m~~ 430 (809)
+...
T Consensus 211 ~~~~ 214 (355)
T cd05804 211 THIA 214 (355)
T ss_pred HHhc
Confidence 7643
No 107
>TIGR03302 OM_YfiO outer membrane assembly lipoprotein YfiO. Members of this protein family include YfiO, a near-essential protein of the outer membrane, part of a complex involved in protein insertion into the bacterial outer membrane. Many proteins in this family are annotated as ComL, based on the involvement of this protein in natural transformation with exogenous DNA in Neisseria gonorrhoeae. This protein family shows sequence similarity to, but is distinct from, the tol-pal system protein YbgF (TIGR02795).
Probab=98.45 E-value=8.7e-06 Score=81.22 Aligned_cols=179 Identities=12% Similarity=0.036 Sum_probs=109.1
Q ss_pred ChhHHhHHHHHHHhcCCHHHHHHHHHhcCC--CC-e---eechHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHH----H
Q 003584 471 SLSVDNSLVLVYAKCGCINDANRVFDSMHT--RD-V---ITWTALIMGCAQNGKGKEALQFYDQMLARGTKPDYI----T 540 (809)
Q Consensus 471 ~~~~~~~li~~y~k~g~~~~A~~~~~~~~~--~~-~---~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~pd~~----t 540 (809)
....+..+...|.+.|++++|...|+++.. |+ . .+|..+...|...|++++|+..|+++.+. .|+.. +
T Consensus 32 ~~~~~~~~g~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~a~~~la~~~~~~~~~~~A~~~~~~~l~~--~p~~~~~~~a 109 (235)
T TIGR03302 32 PAEELYEEAKEALDSGDYTEAIKYFEALESRYPFSPYAEQAQLDLAYAYYKSGDYAEAIAAADRFIRL--HPNHPDADYA 109 (235)
T ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCchhHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHH--CcCCCchHHH
Confidence 344455566666677777777777766542 22 1 24555666667777777777777777663 33322 3
Q ss_pred HHHHHHHHHcc--------CCHHHHHHHHHHhHHhhCCCCChH-HHHHHHHHHhhcCCHHHHHHHHHhCcCCCCHHHHHH
Q 003584 541 FVGLLFACSHA--------GLAENARWYFESMDKVYGIKPGPD-HYACMIDLLGRSGKLIEAKALLDQMVGEPDATVWKA 611 (809)
Q Consensus 541 ~~~ll~a~~~~--------g~~~~a~~~~~~m~~~~~~~p~~~-~~~~li~~~~~~g~~~eA~~~~~~m~~~p~~~~~~~ 611 (809)
+..+..++... |+.++|.+.|+.+.+. .|+.. .+..+... +...... ......
T Consensus 110 ~~~~g~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~---~p~~~~~~~a~~~~----~~~~~~~-----------~~~~~~ 171 (235)
T TIGR03302 110 YYLRGLSNYNQIDRVDRDQTAAREAFEAFQELIRR---YPNSEYAPDAKKRM----DYLRNRL-----------AGKELY 171 (235)
T ss_pred HHHHHHHHHHhcccccCCHHHHHHHHHHHHHHHHH---CCCChhHHHHHHHH----HHHHHHH-----------HHHHHH
Confidence 33444444433 5566666666666543 23221 11111110 0000000 001124
Q ss_pred HHHHHHhcCChhHHHHHHHHHhccCCCC---CccHHhHhhhhhhcCChhHHHHHHHHHHhC
Q 003584 612 LLSACRVHGDLELGERAANNLFELEPMN---AMPYVQLSNMYSTAGKWEDAARVRKLMKSR 669 (809)
Q Consensus 612 ll~a~~~~g~~~~A~~~~~~~~~~~p~~---~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~ 669 (809)
+...+...|+.+.|+..++++++..|++ +..+..++.+|.+.|++++|..+++.+..+
T Consensus 172 ~a~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~a~~~l~~~~~~lg~~~~A~~~~~~l~~~ 232 (235)
T TIGR03302 172 VARFYLKRGAYVAAINRFETVVENYPDTPATEEALARLVEAYLKLGLKDLAQDAAAVLGAN 232 (235)
T ss_pred HHHHHHHcCChHHHHHHHHHHHHHCCCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHhh
Confidence 5667889999999999999999987765 468899999999999999999999887654
No 108
>PF12854 PPR_1: PPR repeat
Probab=98.43 E-value=3.2e-07 Score=58.83 Aligned_cols=33 Identities=36% Similarity=0.542 Sum_probs=26.0
Q ss_pred CCCCchhHHHHHHHHHHhCCChHHHHHHHhccC
Q 003584 265 GFEANVYVQSALIDMYAKCGDLDSARRLLEYSE 297 (809)
Q Consensus 265 g~~~~~~~~~~Li~~y~~~g~~~~A~~~f~~~~ 297 (809)
|+.||..+||+||++|++.|++++|.++|++|+
T Consensus 2 G~~Pd~~ty~~lI~~~Ck~G~~~~A~~l~~~M~ 34 (34)
T PF12854_consen 2 GCEPDVVTYNTLIDGYCKAGRVDEAFELFDEMK 34 (34)
T ss_pred CCCCcHhHHHHHHHHHHHCCCHHHHHHHHHhCc
Confidence 667888888888888888888888888887774
No 109
>PRK10370 formate-dependent nitrite reductase complex subunit NrfG; Provisional
Probab=98.42 E-value=1.1e-05 Score=77.22 Aligned_cols=118 Identities=9% Similarity=0.059 Sum_probs=86.6
Q ss_pred cCCHHHHHHHHHHhHHhhCCCCChHHHHHHHHHHhhcCCHHHHHHHHHhCcC-CC-CHHHHHHHHHHH-HhcCC--hhHH
Q 003584 551 AGLAENARWYFESMDKVYGIKPGPDHYACMIDLLGRSGKLIEAKALLDQMVG-EP-DATVWKALLSAC-RVHGD--LELG 625 (809)
Q Consensus 551 ~g~~~~a~~~~~~m~~~~~~~p~~~~~~~li~~~~~~g~~~eA~~~~~~m~~-~p-~~~~~~~ll~a~-~~~g~--~~~A 625 (809)
.++.+++...++...+ .-+.+...|..|...|...|++++|...+++... .| +...+..+..++ ...|+ .++|
T Consensus 52 ~~~~~~~i~~l~~~L~--~~P~~~~~w~~Lg~~~~~~g~~~~A~~a~~~Al~l~P~~~~~~~~lA~aL~~~~g~~~~~~A 129 (198)
T PRK10370 52 QQTPEAQLQALQDKIR--ANPQNSEQWALLGEYYLWRNDYDNALLAYRQALQLRGENAELYAALATVLYYQAGQHMTPQT 129 (198)
T ss_pred chhHHHHHHHHHHHHH--HCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcCCCCcHHH
Confidence 4455556555555543 2234566777777778888888888888777664 34 555777777764 56666 4888
Q ss_pred HHHHHHHhccCCCCCccHHhHhhhhhhcCChhHHHHHHHHHHhCC
Q 003584 626 ERAANNLFELEPMNAMPYVQLSNMYSTAGKWEDAARVRKLMKSRG 670 (809)
Q Consensus 626 ~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~ 670 (809)
.++++++++.+|+++.++..++..+...|++++|...++++.+..
T Consensus 130 ~~~l~~al~~dP~~~~al~~LA~~~~~~g~~~~Ai~~~~~aL~l~ 174 (198)
T PRK10370 130 REMIDKALALDANEVTALMLLASDAFMQADYAQAIELWQKVLDLN 174 (198)
T ss_pred HHHHHHHHHhCCCChhHHHHHHHHHHHcCCHHHHHHHHHHHHhhC
Confidence 888888888888888888888888888899999988888887653
No 110
>KOG4340 consensus Uncharacterized conserved protein [Function unknown]
Probab=98.40 E-value=0.00013 Score=70.06 Aligned_cols=305 Identities=12% Similarity=0.044 Sum_probs=157.1
Q ss_pred HHHHHHhhcCCChHHHHHHHHHHHHhccCCchHHHHHHHHHHHhcCCHHHHHHHHhhcCC--CCHhHHHH-HHHHHHhcC
Q 003584 340 PSVLNCFASNIDLNNAKSVHSLIVKTGFEGYKFVNNALIDMYAKQGNLDCAFMVFNLMQD--KDVISWTS-LITGCAYHG 416 (809)
Q Consensus 340 ~~ll~~~~~~~~~~~a~~i~~~~~~~g~~~~~~~~~~li~~y~~~g~~~~A~~~f~~~~~--~~~~~~~~-li~~~~~~g 416 (809)
.+++..+.+..++..+.+++..-.+.. +.+....+.|...|-...++..|-..++++.. |...-|.. -...+-+.+
T Consensus 14 taviy~lI~d~ry~DaI~~l~s~~Er~-p~~rAgLSlLgyCYY~~Q~f~~AA~CYeQL~ql~P~~~qYrlY~AQSLY~A~ 92 (459)
T KOG4340|consen 14 TAVVYRLIRDARYADAIQLLGSELERS-PRSRAGLSLLGYCYYRLQEFALAAECYEQLGQLHPELEQYRLYQAQSLYKAC 92 (459)
T ss_pred HHHHHHHHHHhhHHHHHHHHHHHHhcC-ccchHHHHHHHHHHHHHHHHHHHHHHHHHHHhhChHHHHHHHHHHHHHHHhc
Confidence 333444444444444444444433332 11333445556666667777777777776654 22222221 134455667
Q ss_pred CHHHHHHHHHHHhhcCCccCHhHHHHHHHHH--hcccchhHHHHHHHHHHHhCCCCChhHHhHHHHHHHhcCCHHHHHHH
Q 003584 417 SYEEALKYFSDMRISGICPDHVVVSSILSAC--AELTVLEFGQQVHAVFLKSGGCSSLSVDNSLVLVYAKCGCINDANRV 494 (809)
Q Consensus 417 ~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~--~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~y~k~g~~~~A~~~ 494 (809)
.+..|+.+...|... |+...-..-+.+. -+.+++..++.+..+.-. ..+..+.+...-...+.|+.++|.+-
T Consensus 93 i~ADALrV~~~~~D~---~~L~~~~lqLqaAIkYse~Dl~g~rsLveQlp~---en~Ad~~in~gCllykegqyEaAvqk 166 (459)
T KOG4340|consen 93 IYADALRVAFLLLDN---PALHSRVLQLQAAIKYSEGDLPGSRSLVEQLPS---ENEADGQINLGCLLYKEGQYEAAVQK 166 (459)
T ss_pred ccHHHHHHHHHhcCC---HHHHHHHHHHHHHHhcccccCcchHHHHHhccC---CCccchhccchheeeccccHHHHHHH
Confidence 777788777777642 2222111112211 123344444433333221 11222222222334455666666666
Q ss_pred HHhcCC----CCeeechHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHH----HHHHHHHHHccCCHHHHHHHHHHhHH
Q 003584 495 FDSMHT----RDVITWTALIMGCAQNGKGKEALQFYDQMLARGTKPDYIT----FVGLLFACSHAGLAENARWYFESMDK 566 (809)
Q Consensus 495 ~~~~~~----~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~pd~~t----~~~ll~a~~~~g~~~~a~~~~~~m~~ 566 (809)
|+...+ .....||.-+ +..+.|+++.|+++..++++.|++.-+.- -.-.+.+ ..+..-..+..+.
T Consensus 167 FqaAlqvsGyqpllAYniAL-aHy~~~qyasALk~iSEIieRG~r~HPElgIGm~tegiDv----rsvgNt~~lh~Sa-- 239 (459)
T KOG4340|consen 167 FQAALQVSGYQPLLAYNLAL-AHYSSRQYASALKHISEIIERGIRQHPELGIGMTTEGIDV----RSVGNTLVLHQSA-- 239 (459)
T ss_pred HHHHHhhcCCCchhHHHHHH-HHHhhhhHHHHHHHHHHHHHhhhhcCCccCccceeccCch----hcccchHHHHHHH--
Confidence 655542 1223444332 23344566666666666666554321110 0000000 0000000000000
Q ss_pred hhCCCCChHHHHHHHHHHhhcCCHHHHHHHHHhCcC----CCCHHHHHHHHHHHHhcCChhHHHHHHHHHhccCCCCCcc
Q 003584 567 VYGIKPGPDHYACMIDLLGRSGKLIEAKALLDQMVG----EPDATVWKALLSACRVHGDLELGERAANNLFELEPMNAMP 642 (809)
Q Consensus 567 ~~~~~p~~~~~~~li~~~~~~g~~~eA~~~~~~m~~----~p~~~~~~~ll~a~~~~g~~~~A~~~~~~~~~~~p~~~~~ 642 (809)
-+..++.-...+.+.|+.+.|.+.+..||. +.|+++...+.- --..++...+.+-+.-+++++|-.+.+
T Consensus 240 ------l~eAfNLKaAIeyq~~n~eAA~eaLtDmPPRaE~elDPvTLHN~Al-~n~~~~p~~g~~KLqFLL~~nPfP~ET 312 (459)
T KOG4340|consen 240 ------LVEAFNLKAAIEYQLRNYEAAQEALTDMPPRAEEELDPVTLHNQAL-MNMDARPTEGFEKLQFLLQQNPFPPET 312 (459)
T ss_pred ------HHHHhhhhhhhhhhcccHHHHHHHhhcCCCcccccCCchhhhHHHH-hcccCCccccHHHHHHHHhcCCCChHH
Confidence 012233334456788999999999999985 368887766542 233456666777778889999988899
Q ss_pred HHhHhhhhhhcCChhHHHHHHHH
Q 003584 643 YVQLSNMYSTAGKWEDAARVRKL 665 (809)
Q Consensus 643 ~~~l~~~~~~~g~~~~A~~~~~~ 665 (809)
+..+.-+|++..-++-|..++-+
T Consensus 313 FANlLllyCKNeyf~lAADvLAE 335 (459)
T KOG4340|consen 313 FANLLLLYCKNEYFDLAADVLAE 335 (459)
T ss_pred HHHHHHHHhhhHHHhHHHHHHhh
Confidence 99999999999999999887754
No 111
>KOG1128 consensus Uncharacterized conserved protein, contains TPR repeats [General function prediction only]
Probab=98.39 E-value=8.9e-06 Score=87.39 Aligned_cols=221 Identities=16% Similarity=0.150 Sum_probs=144.2
Q ss_pred ccCCchHHHHHHHHHHHhcCCHHHHHHHHhhcCCCCHhHHHHHHHHHHhcCCHHHHHHHHHHHhhcCCccCHhHHHHHHH
Q 003584 366 GFEGYKFVNNALIDMYAKQGNLDCAFMVFNLMQDKDVISWTSLITGCAYHGSYEEALKYFSDMRISGICPDHVVVSSILS 445 (809)
Q Consensus 366 g~~~~~~~~~~li~~y~~~g~~~~A~~~f~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~ 445 (809)
+++|--..-..+...+.+.|-...|..+|++. ..|.-.|.+|...|+..+|..+..+-.++ +||..-|..+.+
T Consensus 393 ~lpp~Wq~q~~laell~slGitksAl~I~Erl-----emw~~vi~CY~~lg~~~kaeei~~q~lek--~~d~~lyc~LGD 465 (777)
T KOG1128|consen 393 HLPPIWQLQRLLAELLLSLGITKSALVIFERL-----EMWDPVILCYLLLGQHGKAEEINRQELEK--DPDPRLYCLLGD 465 (777)
T ss_pred CCCCcchHHHHHHHHHHHcchHHHHHHHHHhH-----HHHHHHHHHHHHhcccchHHHHHHHHhcC--CCcchhHHHhhh
Confidence 34555556677888889999999999999876 46888888899999888888888777763 455555544443
Q ss_pred HHhcccchhHHHHHHHHHHHhCCCCChhHHhHHHHHHHhcCCHHHHHHHHHhcCCCCeeechHHHHHHHhcCChHHHHHH
Q 003584 446 ACAELTVLEFGQQVHAVFLKSGGCSSLSVDNSLVLVYAKCGCINDANRVFDSMHTRDVITWTALIMGCAQNGKGKEALQF 525 (809)
Q Consensus 446 a~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~y~k~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~l 525 (809)
......-+++|.++++....+--..|+.. ...+++++++.+.
T Consensus 466 -----------------------------------v~~d~s~yEkawElsn~~sarA~r~~~~~---~~~~~~fs~~~~h 507 (777)
T KOG1128|consen 466 -----------------------------------VLHDPSLYEKAWELSNYISARAQRSLALL---ILSNKDFSEADKH 507 (777)
T ss_pred -----------------------------------hccChHHHHHHHHHhhhhhHHHHHhhccc---cccchhHHHHHHH
Confidence 33333445666666665543211112111 1236788888888
Q ss_pred HHHHHHCCCCC-CHHHHHHHHHHHHccCCHHHHHHHHHHhHHhhCCCCC-hHHHHHHHHHHhhcCCHHHHHHHHHhCcC-
Q 003584 526 YDQMLARGTKP-DYITFVGLLFACSHAGLAENARWYFESMDKVYGIKPG-PDHYACMIDLLGRSGKLIEAKALLDQMVG- 602 (809)
Q Consensus 526 ~~~m~~~g~~p-d~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~-~~~~~~li~~~~~~g~~~eA~~~~~~m~~- 602 (809)
|+.-.+. .| -..||-.+..+..+.++++.|.+.|..-. .+.|+ ...|+.+-.+|.+.|+..+|...+++...
T Consensus 508 le~sl~~--nplq~~~wf~~G~~ALqlek~q~av~aF~rcv---tL~Pd~~eaWnNls~ayi~~~~k~ra~~~l~EAlKc 582 (777)
T KOG1128|consen 508 LERSLEI--NPLQLGTWFGLGCAALQLEKEQAAVKAFHRCV---TLEPDNAEAWNNLSTAYIRLKKKKRAFRKLKEALKC 582 (777)
T ss_pred HHHHhhc--CccchhHHHhccHHHHHHhhhHHHHHHHHHHh---hcCCCchhhhhhhhHHHHHHhhhHHHHHHHHHHhhc
Confidence 8776653 33 33467777777777777777777776654 34454 36677777777777777777777766653
Q ss_pred -CCCHHHHHHHHHHHHhcCChhHHHHHHHHHhccC
Q 003584 603 -EPDATVWKALLSACRVHGDLELGERAANNLFELE 636 (809)
Q Consensus 603 -~p~~~~~~~ll~a~~~~g~~~~A~~~~~~~~~~~ 636 (809)
..+..+|.+..-....-|.+++|++++.+++.+.
T Consensus 583 n~~~w~iWENymlvsvdvge~eda~~A~~rll~~~ 617 (777)
T KOG1128|consen 583 NYQHWQIWENYMLVSVDVGEFEDAIKAYHRLLDLR 617 (777)
T ss_pred CCCCCeeeechhhhhhhcccHHHHHHHHHHHHHhh
Confidence 1334466666666777777777777777766543
No 112
>KOG1070 consensus rRNA processing protein Rrp5 [RNA processing and modification]
Probab=98.36 E-value=2.2e-05 Score=89.98 Aligned_cols=198 Identities=14% Similarity=0.113 Sum_probs=169.7
Q ss_pred CCChhHHhHHHHHHHhcCCHHHHHHHHHhcCCC--------CeeechHHHHHHHhcCChHHHHHHHHHHHHCCCCCCH-H
Q 003584 469 CSSLSVDNSLVLVYAKCGCINDANRVFDSMHTR--------DVITWTALIMGCAQNGKGKEALQFYDQMLARGTKPDY-I 539 (809)
Q Consensus 469 ~~~~~~~~~li~~y~k~g~~~~A~~~~~~~~~~--------~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~pd~-~ 539 (809)
+.....|-..+......++++.|++++++.... -...|.++++.....|.-+...++|+++.+. -|+ .
T Consensus 1455 PNSSi~WI~YMaf~LelsEiekAR~iaerAL~tIN~REeeEKLNiWiA~lNlEn~yG~eesl~kVFeRAcqy---cd~~~ 1531 (1710)
T KOG1070|consen 1455 PNSSILWIRYMAFHLELSEIEKARKIAERALKTINFREEEEKLNIWIAYLNLENAYGTEESLKKVFERACQY---CDAYT 1531 (1710)
T ss_pred CCcchHHHHHHHHHhhhhhhHHHHHHHHHHhhhCCcchhHHHHHHHHHHHhHHHhhCcHHHHHHHHHHHHHh---cchHH
Confidence 445666777777788899999999999987631 2357999999888899889999999999883 344 4
Q ss_pred HHHHHHHHHHccCCHHHHHHHHHHhHHhhCCCCChHHHHHHHHHHhhcCCHHHHHHHHHhCcCC-C---CHHHHHHHHHH
Q 003584 540 TFVGLLFACSHAGLAENARWYFESMDKVYGIKPGPDHYACMIDLLGRSGKLIEAKALLDQMVGE-P---DATVWKALLSA 615 (809)
Q Consensus 540 t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~~~~~~~li~~~~~~g~~~eA~~~~~~m~~~-p---~~~~~~~ll~a 615 (809)
.|..|...|.+.+..++|.++++.|.++++ .....|..+++.+.+...-++|..++.++... | ......-.+..
T Consensus 1532 V~~~L~~iy~k~ek~~~A~ell~~m~KKF~--q~~~vW~~y~~fLl~~ne~~aa~~lL~rAL~~lPk~eHv~~IskfAqL 1609 (1710)
T KOG1070|consen 1532 VHLKLLGIYEKSEKNDEADELLRLMLKKFG--QTRKVWIMYADFLLRQNEAEAARELLKRALKSLPKQEHVEFISKFAQL 1609 (1710)
T ss_pred HHHHHHHHHHHhhcchhHHHHHHHHHHHhc--chhhHHHHHHHHHhcccHHHHHHHHHHHHHhhcchhhhHHHHHHHHHH
Confidence 688999999999999999999999999877 66788999999999999999999999887641 3 34466666777
Q ss_pred HHhcCChhHHHHHHHHHhccCCCCCccHHhHhhhhhhcCChhHHHHHHHHHHhCCC
Q 003584 616 CRVHGDLELGERAANNLFELEPMNAMPYVQLSNMYSTAGKWEDAARVRKLMKSRGI 671 (809)
Q Consensus 616 ~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~ 671 (809)
-.++|+.+.+..+|+.++.-.|.....|..++++=.+.|..+.++.+|++....++
T Consensus 1610 EFk~GDaeRGRtlfEgll~ayPKRtDlW~VYid~eik~~~~~~vR~lfeRvi~l~l 1665 (1710)
T KOG1070|consen 1610 EFKYGDAERGRTLFEGLLSAYPKRTDLWSVYIDMEIKHGDIKYVRDLFERVIELKL 1665 (1710)
T ss_pred HhhcCCchhhHHHHHHHHhhCccchhHHHHHHHHHHccCCHHHHHHHHHHHHhcCC
Confidence 78999999999999999999999999999999999999999999999999998865
No 113
>PRK15359 type III secretion system chaperone protein SscB; Provisional
Probab=98.36 E-value=5.9e-06 Score=74.65 Aligned_cols=99 Identities=11% Similarity=-0.050 Sum_probs=88.5
Q ss_pred CCCChHHHHHHHHHHhhcCCHHHHHHHHHhCcC--CCCHHHHHHHHHHHHhcCChhHHHHHHHHHhccCCCCCccHHhHh
Q 003584 570 IKPGPDHYACMIDLLGRSGKLIEAKALLDQMVG--EPDATVWKALLSACRVHGDLELGERAANNLFELEPMNAMPYVQLS 647 (809)
Q Consensus 570 ~~p~~~~~~~li~~~~~~g~~~eA~~~~~~m~~--~p~~~~~~~ll~a~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~ 647 (809)
+.|+ .+..+...+...|++++|.+.|+.... +.+...|..+..++...|++++|+..++++++++|+++.++..++
T Consensus 22 ~~p~--~~~~~g~~~~~~g~~~~A~~~~~~al~~~P~~~~a~~~lg~~~~~~g~~~~A~~~y~~Al~l~p~~~~a~~~lg 99 (144)
T PRK15359 22 VDPE--TVYASGYASWQEGDYSRAVIDFSWLVMAQPWSWRAHIALAGTWMMLKEYTTAINFYGHALMLDASHPEPVYQTG 99 (144)
T ss_pred cCHH--HHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCCCcHHHHHHH
Confidence 4454 355678889999999999999998775 346779999999999999999999999999999999999999999
Q ss_pred hhhhhcCChhHHHHHHHHHHhCC
Q 003584 648 NMYSTAGKWEDAARVRKLMKSRG 670 (809)
Q Consensus 648 ~~~~~~g~~~~A~~~~~~m~~~~ 670 (809)
.++...|+.++|...++...+..
T Consensus 100 ~~l~~~g~~~eAi~~~~~Al~~~ 122 (144)
T PRK15359 100 VCLKMMGEPGLAREAFQTAIKMS 122 (144)
T ss_pred HHHHHcCCHHHHHHHHHHHHHhC
Confidence 99999999999999999987653
No 114
>PLN02789 farnesyltranstransferase
Probab=98.33 E-value=0.00011 Score=75.67 Aligned_cols=171 Identities=10% Similarity=0.120 Sum_probs=115.3
Q ss_pred HHHHHhcC-CHHHHHHHHHhcC---CCCeeechHHHHHHHhcCCh--HHHHHHHHHHHHCCCCC-CHHHHHHHHHHHHcc
Q 003584 479 VLVYAKCG-CINDANRVFDSMH---TRDVITWTALIMGCAQNGKG--KEALQFYDQMLARGTKP-DYITFVGLLFACSHA 551 (809)
Q Consensus 479 i~~y~k~g-~~~~A~~~~~~~~---~~~~~~~~~li~~~~~~g~~--~~A~~l~~~m~~~g~~p-d~~t~~~ll~a~~~~ 551 (809)
..++.+.| .+++++..++++. .++..+|+.....+.+.|+. ++++.+++++++. .| |..+|.....++.+.
T Consensus 78 ~~iL~~L~~~l~eeL~~~~~~i~~npknyqaW~~R~~~l~~l~~~~~~~el~~~~kal~~--dpkNy~AW~~R~w~l~~l 155 (320)
T PLN02789 78 RLCLEALDADLEEELDFAEDVAEDNPKNYQIWHHRRWLAEKLGPDAANKELEFTRKILSL--DAKNYHAWSHRQWVLRTL 155 (320)
T ss_pred HHHHHHcchhHHHHHHHHHHHHHHCCcchHHhHHHHHHHHHcCchhhHHHHHHHHHHHHh--CcccHHHHHHHHHHHHHh
Confidence 33344445 4677777777665 33445677655555556653 6678888888774 44 445777777778888
Q ss_pred CCHHHHHHHHHHhHHhhCCCCChHHHHHHHHHHhhc---CC----HHHHHHHHHhCcC-CC-CHHHHHHHHHHHHhcC--
Q 003584 552 GLAENARWYFESMDKVYGIKPGPDHYACMIDLLGRS---GK----LIEAKALLDQMVG-EP-DATVWKALLSACRVHG-- 620 (809)
Q Consensus 552 g~~~~a~~~~~~m~~~~~~~p~~~~~~~li~~~~~~---g~----~~eA~~~~~~m~~-~p-~~~~~~~ll~a~~~~g-- 620 (809)
|+++++++.++.+.+. . ..+...|+....++.+. |. .+++.++..++.. .| |..+|+-+...+...+
T Consensus 156 ~~~~eeL~~~~~~I~~-d-~~N~sAW~~R~~vl~~~~~l~~~~~~~e~el~y~~~aI~~~P~N~SaW~Yl~~ll~~~~~~ 233 (320)
T PLN02789 156 GGWEDELEYCHQLLEE-D-VRNNSAWNQRYFVITRSPLLGGLEAMRDSELKYTIDAILANPRNESPWRYLRGLFKDDKEA 233 (320)
T ss_pred hhHHHHHHHHHHHHHH-C-CCchhHHHHHHHHHHhccccccccccHHHHHHHHHHHHHhCCCCcCHHHHHHHHHhcCCcc
Confidence 8888888888888754 2 22334454444444333 22 3467777755553 34 6679999999998843
Q ss_pred --ChhHHHHHHHHHhccCCCCCccHHhHhhhhhhc
Q 003584 621 --DLELGERAANNLFELEPMNAMPYVQLSNMYSTA 653 (809)
Q Consensus 621 --~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~ 653 (809)
+..+|...+.+++..+|+++.++..|+++|+..
T Consensus 234 l~~~~~~~~~~~~~~~~~~~s~~al~~l~d~~~~~ 268 (320)
T PLN02789 234 LVSDPEVSSVCLEVLSKDSNHVFALSDLLDLLCEG 268 (320)
T ss_pred cccchhHHHHHHHhhcccCCcHHHHHHHHHHHHhh
Confidence 456788889999999999999999999999864
No 115
>PRK15363 pathogenicity island 2 chaperone protein SscA; Provisional
Probab=98.32 E-value=7.9e-06 Score=72.33 Aligned_cols=119 Identities=8% Similarity=0.020 Sum_probs=97.6
Q ss_pred hHHHHHHHHHHhhcCCHHHHHHHHHhCcC-CC-CHHHHHHHHHHHHhcCChhHHHHHHHHHhccCCCCCccHHhHhhhhh
Q 003584 574 PDHYACMIDLLGRSGKLIEAKALLDQMVG-EP-DATVWKALLSACRVHGDLELGERAANNLFELEPMNAMPYVQLSNMYS 651 (809)
Q Consensus 574 ~~~~~~li~~~~~~g~~~eA~~~~~~m~~-~p-~~~~~~~ll~a~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~ 651 (809)
.+..-.+...+...|++++|..+|+-... .| +..-|-.|...|...|++++|+..|.++..++|+++.++..++.+|.
T Consensus 35 l~~lY~~A~~ly~~G~l~~A~~~f~~L~~~Dp~~~~y~~gLG~~~Q~~g~~~~AI~aY~~A~~L~~ddp~~~~~ag~c~L 114 (157)
T PRK15363 35 LNTLYRYAMQLMEVKEFAGAARLFQLLTIYDAWSFDYWFRLGECCQAQKHWGEAIYAYGRAAQIKIDAPQAPWAAAECYL 114 (157)
T ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCCCchHHHHHHHHHH
Confidence 34455667778899999999999987664 34 56689999999999999999999999999999999999999999999
Q ss_pred hcCChhHHHHHHHHHHhCCCccCCceeEEEECCEEEEEEeCCCCCcchHHHHHHHHHHHHHHHH
Q 003584 652 TAGKWEDAARVRKLMKSRGIRKEPGCSWVETNSQVHIFISEDRGHPLRTDIYSKIDEIMLLIKE 715 (809)
Q Consensus 652 ~~g~~~~A~~~~~~m~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~i~~~l~~l~~~~~~ 715 (809)
..|+.+.|.+.|+...... + .+|....+..+.+...+.+.+
T Consensus 115 ~lG~~~~A~~aF~~Ai~~~---------------------~--~~~~~~~l~~~A~~~L~~l~~ 155 (157)
T PRK15363 115 ACDNVCYAIKALKAVVRIC---------------------G--EVSEHQILRQRAEKMLQQLSD 155 (157)
T ss_pred HcCCHHHHHHHHHHHHHHh---------------------c--cChhHHHHHHHHHHHHHHhhc
Confidence 9999999999999877541 1 246667776666666555543
No 116
>KOG1914 consensus mRNA cleavage and polyadenylation factor I complex, subunit RNA14 [RNA processing and modification]
Probab=98.28 E-value=0.0087 Score=62.86 Aligned_cols=131 Identities=11% Similarity=0.026 Sum_probs=85.2
Q ss_pred CCchHHHHHHHHhhhcCCChhHHHHHhhhCCCC-C-CcccHHHHHHHHhhCCChHHHHHHHHHHHHCCCCCCcchHHHHH
Q 003584 165 DLNAFVVTGLVDMYAKCKCIFEAEYLFKMFPDG-K-NHVAWTTMITGYSQNGYGFKAIECFRDMRVEGVESNQFTFPSIL 242 (809)
Q Consensus 165 ~~~~~~~~~li~~y~~~g~~~~A~~~f~~~~~~-~-~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll 242 (809)
+-|...|+.||.-+... .+++++..++++... | ....|..-|.+-....+++....+|.+.+..-. +...|..-|
T Consensus 17 P~di~sw~~lire~qt~-~~~~~R~~YEq~~~~FP~s~r~W~~yi~~El~skdfe~VEkLF~RCLvkvL--nlDLW~lYl 93 (656)
T KOG1914|consen 17 PYDIDSWSQLIREAQTQ-PIDKVRETYEQLVNVFPSSPRAWKLYIERELASKDFESVEKLFSRCLVKVL--NLDLWKLYL 93 (656)
T ss_pred CccHHHHHHHHHHHccC-CHHHHHHHHHHHhccCCCCcHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHh--hHhHHHHHH
Confidence 56889999999877665 899999999987652 2 456899999999999999999999999876533 344555545
Q ss_pred HHHhc-cCChHHHH----HHHHHH-HHhCCCC-chhHHHHHHHH---------HHhCCChHHHHHHHhccCC
Q 003584 243 TACAA-VSARDFGA----QVHGCI-LSSGFEA-NVYVQSALIDM---------YAKCGDLDSARRLLEYSEI 298 (809)
Q Consensus 243 ~~~~~-~~~~~~a~----~~~~~~-~~~g~~~-~~~~~~~Li~~---------y~~~g~~~~A~~~f~~~~~ 298 (809)
.--.+ .+.....+ +.|+.. .+.|+.+ +...|+..+.. |....+++..+++++++..
T Consensus 94 ~YVR~~~~~~~~~r~~m~qAy~f~l~kig~di~s~siW~eYi~FL~~vea~gk~ee~QRI~~vRriYqral~ 165 (656)
T KOG1914|consen 94 SYVRETKGKLFGYREKMVQAYDFALEKIGMDIKSYSIWDEYINFLEGVEAVGKYEENQRITAVRRIYQRALV 165 (656)
T ss_pred HHHHHHccCcchHHHHHHHHHHHHHHHhccCcccchhHHHHHHHHHcccccccHHHHHHHHHHHHHHHHHhc
Confidence 43332 23333322 233333 3455443 23345555543 3344567777888877653
No 117
>KOG1125 consensus TPR repeat-containing protein [General function prediction only]
Probab=98.27 E-value=0.00012 Score=77.15 Aligned_cols=214 Identities=17% Similarity=0.153 Sum_probs=153.2
Q ss_pred hcCCChHHHHHHHHHHHHhccCCchHHHHHHHHHHHhcCCHHHHHHHHhhcCC---CCHhHHHHHHHHHHhcCCHHHHHH
Q 003584 347 ASNIDLNNAKSVHSLIVKTGFEGYKFVNNALIDMYAKQGNLDCAFMVFNLMQD---KDVISWTSLITGCAYHGSYEEALK 423 (809)
Q Consensus 347 ~~~~~~~~a~~i~~~~~~~g~~~~~~~~~~li~~y~~~g~~~~A~~~f~~~~~---~~~~~~~~li~~~~~~g~~~~A~~ 423 (809)
.+.|++.+|.-.|+..++.. +.+...|.-|.......++-..|+..+.+..+ .|....-+|.-.|...|.-.+|++
T Consensus 296 m~nG~L~~A~LafEAAVkqd-P~haeAW~~LG~~qaENE~E~~ai~AL~rcl~LdP~NleaLmaLAVSytNeg~q~~Al~ 374 (579)
T KOG1125|consen 296 MKNGDLSEAALAFEAAVKQD-PQHAEAWQKLGITQAENENEQNAISALRRCLELDPTNLEALMALAVSYTNEGLQNQALK 374 (579)
T ss_pred HhcCCchHHHHHHHHHHhhC-hHHHHHHHHhhhHhhhccchHHHHHHHHHHHhcCCccHHHHHHHHHHHhhhhhHHHHHH
Confidence 45667777777777777665 55667777777777777777777777777655 366777778888888888888998
Q ss_pred HHHHHhhcCCc--------cCHhHHHHHHHHHhcccchhHHHHHHHH-HHHhCCCCChhHHhHHHHHHHhcCCHHHHHHH
Q 003584 424 YFSDMRISGIC--------PDHVVVSSILSACAELTVLEFGQQVHAV-FLKSGGCSSLSVDNSLVLVYAKCGCINDANRV 494 (809)
Q Consensus 424 ~~~~m~~~g~~--------p~~~t~~~ll~a~~~~~~~~~a~~~~~~-~~~~g~~~~~~~~~~li~~y~k~g~~~~A~~~ 494 (809)
.++.-.....+ ++..+-.. ........+....++|-. ....+...|..+...|.-.|--.|+++.|...
T Consensus 375 ~L~~Wi~~~p~y~~l~~a~~~~~~~~~--~s~~~~~~l~~i~~~fLeaa~~~~~~~DpdvQ~~LGVLy~ls~efdraiDc 452 (579)
T KOG1125|consen 375 MLDKWIRNKPKYVHLVSAGENEDFENT--KSFLDSSHLAHIQELFLEAARQLPTKIDPDVQSGLGVLYNLSGEFDRAVDC 452 (579)
T ss_pred HHHHHHHhCccchhccccCccccccCC--cCCCCHHHHHHHHHHHHHHHHhCCCCCChhHHhhhHHHHhcchHHHHHHHH
Confidence 88887543210 00000000 111222223334444443 34455568888899999999999999999999
Q ss_pred HHhcC--CC-CeeechHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHH-HHHHHHHHHHccCCHHHHHHHHHHhH
Q 003584 495 FDSMH--TR-DVITWTALIMGCAQNGKGKEALQFYDQMLARGTKPDYI-TFVGLLFACSHAGLAENARWYFESMD 565 (809)
Q Consensus 495 ~~~~~--~~-~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~pd~~-t~~~ll~a~~~~g~~~~a~~~~~~m~ 565 (809)
|+... +| |...||.|...++...+.++|+..|++.++ ++|+.+ ....|.-+|...|.+++|.+.|-...
T Consensus 453 f~~AL~v~Pnd~~lWNRLGAtLAN~~~s~EAIsAY~rALq--LqP~yVR~RyNlgIS~mNlG~ykEA~~hlL~AL 525 (579)
T KOG1125|consen 453 FEAALQVKPNDYLLWNRLGATLANGNRSEEAISAYNRALQ--LQPGYVRVRYNLGISCMNLGAYKEAVKHLLEAL 525 (579)
T ss_pred HHHHHhcCCchHHHHHHhhHHhcCCcccHHHHHHHHHHHh--cCCCeeeeehhhhhhhhhhhhHHHHHHHHHHHH
Confidence 99876 33 678999999999999999999999999998 689876 55567778999999999988875543
No 118
>PRK10370 formate-dependent nitrite reductase complex subunit NrfG; Provisional
Probab=98.27 E-value=6.7e-05 Score=71.75 Aligned_cols=154 Identities=11% Similarity=0.091 Sum_probs=118.1
Q ss_pred HHHHHhcCCHHHHHHHHHhcCCCCeeechHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCCHHHHH
Q 003584 479 VLVYAKCGCINDANRVFDSMHTRDVITWTALIMGCAQNGKGKEALQFYDQMLARGTKPDYITFVGLLFACSHAGLAENAR 558 (809)
Q Consensus 479 i~~y~k~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~pd~~t~~~ll~a~~~~g~~~~a~ 558 (809)
+-.|.+.|+++......+.+..+. . .|...++.++++..+++.++.. +.|...|..+...|...|++++|.
T Consensus 23 ~~~Y~~~g~~~~v~~~~~~~~~~~-~-------~~~~~~~~~~~i~~l~~~L~~~-P~~~~~w~~Lg~~~~~~g~~~~A~ 93 (198)
T PRK10370 23 VGSYLLSPKWQAVRAEYQRLADPL-H-------QFASQQTPEAQLQALQDKIRAN-PQNSEQWALLGEYYLWRNDYDNAL 93 (198)
T ss_pred HHHHHHcchHHHHHHHHHHHhCcc-c-------cccCchhHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHHCCCHHHHH
Confidence 456888888877665554433221 1 1223567788888888888752 445668889999999999999999
Q ss_pred HHHHHhHHhhCCCC-ChHHHHHHHHH-HhhcCC--HHHHHHHHHhCcC-CC-CHHHHHHHHHHHHhcCChhHHHHHHHHH
Q 003584 559 WYFESMDKVYGIKP-GPDHYACMIDL-LGRSGK--LIEAKALLDQMVG-EP-DATVWKALLSACRVHGDLELGERAANNL 632 (809)
Q Consensus 559 ~~~~~m~~~~~~~p-~~~~~~~li~~-~~~~g~--~~eA~~~~~~m~~-~p-~~~~~~~ll~a~~~~g~~~~A~~~~~~~ 632 (809)
..|+...+ +.| +...+..+..+ +.+.|+ .++|.+++++... .| +..++..|...+...|++++|+..++++
T Consensus 94 ~a~~~Al~---l~P~~~~~~~~lA~aL~~~~g~~~~~~A~~~l~~al~~dP~~~~al~~LA~~~~~~g~~~~Ai~~~~~a 170 (198)
T PRK10370 94 LAYRQALQ---LRGENAELYAALATVLYYQAGQHMTPQTREMIDKALALDANEVTALMLLASDAFMQADYAQAIELWQKV 170 (198)
T ss_pred HHHHHHHH---hCCCCHHHHHHHHHHHHHhcCCCCcHHHHHHHHHHHHhCCCChhHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 99998874 445 56778888886 477787 5999999999885 34 5669999999999999999999999999
Q ss_pred hccCCCCCccHH
Q 003584 633 FELEPMNAMPYV 644 (809)
Q Consensus 633 ~~~~p~~~~~~~ 644 (809)
+++.|.+..-+.
T Consensus 171 L~l~~~~~~r~~ 182 (198)
T PRK10370 171 LDLNSPRVNRTQ 182 (198)
T ss_pred HhhCCCCccHHH
Confidence 999987765443
No 119
>COG5010 TadD Flp pilus assembly protein TadD, contains TPR repeats [Intracellular trafficking and secretion]
Probab=98.26 E-value=3.8e-05 Score=73.04 Aligned_cols=134 Identities=19% Similarity=0.147 Sum_probs=107.2
Q ss_pred CCCHHHHHHHHHHHHccCCHHHHHHHHHHhHHhhCCCCChHHHHHHHHHHhhcCCHHHHHHHHHhCcC--CCCHHHHHHH
Q 003584 535 KPDYITFVGLLFACSHAGLAENARWYFESMDKVYGIKPGPDHYACMIDLLGRSGKLIEAKALLDQMVG--EPDATVWKAL 612 (809)
Q Consensus 535 ~pd~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~~~~~~~li~~~~~~g~~~eA~~~~~~m~~--~p~~~~~~~l 612 (809)
.|+......+-.++...|+-+.+..+...... ....+......++....+.|++.+|...+++... ++|...|+.+
T Consensus 63 ~p~d~~i~~~a~a~~~~G~a~~~l~~~~~~~~--~~~~d~~ll~~~gk~~~~~g~~~~A~~~~rkA~~l~p~d~~~~~~l 140 (257)
T COG5010 63 NPEDLSIAKLATALYLRGDADSSLAVLQKSAI--AYPKDRELLAAQGKNQIRNGNFGEAVSVLRKAARLAPTDWEAWNLL 140 (257)
T ss_pred CcchHHHHHHHHHHHhcccccchHHHHhhhhc--cCcccHHHHHHHHHHHHHhcchHHHHHHHHHHhccCCCChhhhhHH
Confidence 55443335566677777887777777665432 2233444555688889999999999999998875 4788899999
Q ss_pred HHHHHhcCChhHHHHHHHHHhccCCCCCccHHhHhhhhhhcCChhHHHHHHHHHHhCC
Q 003584 613 LSACRVHGDLELGERAANNLFELEPMNAMPYVQLSNMYSTAGKWEDAARVRKLMKSRG 670 (809)
Q Consensus 613 l~a~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~ 670 (809)
..+|-+.|+.++|...|.+++++.|+++.++..|+..|.-.|+.++|..++......+
T Consensus 141 gaaldq~Gr~~~Ar~ay~qAl~L~~~~p~~~nNlgms~~L~gd~~~A~~lll~a~l~~ 198 (257)
T COG5010 141 GAALDQLGRFDEARRAYRQALELAPNEPSIANNLGMSLLLRGDLEDAETLLLPAYLSP 198 (257)
T ss_pred HHHHHHccChhHHHHHHHHHHHhccCCchhhhhHHHHHHHcCCHHHHHHHHHHHHhCC
Confidence 9999999999999999999999999999999999999999999999999998877553
No 120
>PRK15179 Vi polysaccharide biosynthesis protein TviE; Provisional
Probab=98.24 E-value=8.2e-05 Score=84.37 Aligned_cols=140 Identities=11% Similarity=0.056 Sum_probs=114.0
Q ss_pred CCeeechHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHH-HHHHHHHHHHccCCHHHHHHHHHHhHHhhCCCCC-hHHHH
Q 003584 501 RDVITWTALIMGCAQNGKGKEALQFYDQMLARGTKPDYI-TFVGLLFACSHAGLAENARWYFESMDKVYGIKPG-PDHYA 578 (809)
Q Consensus 501 ~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~pd~~-t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~-~~~~~ 578 (809)
.++..+-.|.....+.|++++|..+++...+ +.||.. ....+..++.+.+.+++|...+++... ..|+ ..+..
T Consensus 84 ~~~~~~~~La~i~~~~g~~~ea~~~l~~~~~--~~Pd~~~a~~~~a~~L~~~~~~eeA~~~~~~~l~---~~p~~~~~~~ 158 (694)
T PRK15179 84 HTELFQVLVARALEAAHRSDEGLAVWRGIHQ--RFPDSSEAFILMLRGVKRQQGIEAGRAEIELYFS---GGSSSAREIL 158 (694)
T ss_pred ccHHHHHHHHHHHHHcCCcHHHHHHHHHHHh--hCCCcHHHHHHHHHHHHHhccHHHHHHHHHHHhh---cCCCCHHHHH
Confidence 3466777788888899999999999999988 578875 677888899999999999999888764 4554 46777
Q ss_pred HHHHHHhhcCCHHHHHHHHHhCcC-CCC-HHHHHHHHHHHHhcCChhHHHHHHHHHhccCCCCCccHHh
Q 003584 579 CMIDLLGRSGKLIEAKALLDQMVG-EPD-ATVWKALLSACRVHGDLELGERAANNLFELEPMNAMPYVQ 645 (809)
Q Consensus 579 ~li~~~~~~g~~~eA~~~~~~m~~-~p~-~~~~~~ll~a~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~ 645 (809)
.+..++.+.|+.++|.++|++... .|+ ..+|.++..++...|+.++|..+|+++++...+-...|..
T Consensus 159 ~~a~~l~~~g~~~~A~~~y~~~~~~~p~~~~~~~~~a~~l~~~G~~~~A~~~~~~a~~~~~~~~~~~~~ 227 (694)
T PRK15179 159 LEAKSWDEIGQSEQADACFERLSRQHPEFENGYVGWAQSLTRRGALWRARDVLQAGLDAIGDGARKLTR 227 (694)
T ss_pred HHHHHHHHhcchHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhCcchHHHHH
Confidence 888899999999999999998884 344 5689999999999999999999999998876554455443
No 121
>KOG1128 consensus Uncharacterized conserved protein, contains TPR repeats [General function prediction only]
Probab=98.22 E-value=2.6e-05 Score=83.90 Aligned_cols=189 Identities=20% Similarity=0.156 Sum_probs=127.1
Q ss_pred CCCCChhHHhHHHHHHHhcCCHHHHHHHHHhcCCCCeeechHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHH
Q 003584 467 GGCSSLSVDNSLVLVYAKCGCINDANRVFDSMHTRDVITWTALIMGCAQNGKGKEALQFYDQMLARGTKPDYITFVGLLF 546 (809)
Q Consensus 467 g~~~~~~~~~~li~~y~k~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~pd~~t~~~ll~ 546 (809)
+++|--..-..+.+.+.++|-...|..+|++.. .|.-.|..|...|+..+|..+..+-.+ -+||..-|..+.+
T Consensus 393 ~lpp~Wq~q~~laell~slGitksAl~I~Erle-----mw~~vi~CY~~lg~~~kaeei~~q~le--k~~d~~lyc~LGD 465 (777)
T KOG1128|consen 393 HLPPIWQLQRLLAELLLSLGITKSALVIFERLE-----MWDPVILCYLLLGQHGKAEEINRQELE--KDPDPRLYCLLGD 465 (777)
T ss_pred CCCCcchHHHHHHHHHHHcchHHHHHHHHHhHH-----HHHHHHHHHHHhcccchHHHHHHHHhc--CCCcchhHHHhhh
Confidence 445555566677888888888888888888764 577778888888888888888777776 3788888888888
Q ss_pred HHHccCCHHHHHHHHHHhHHhhCCCCChHHHHHHHHHHhhcCCHHHHHHHHHhCcC-CC-CHHHHHHHHHHHHhcCChhH
Q 003584 547 ACSHAGLAENARWYFESMDKVYGIKPGPDHYACMIDLLGRSGKLIEAKALLDQMVG-EP-DATVWKALLSACRVHGDLEL 624 (809)
Q Consensus 547 a~~~~g~~~~a~~~~~~m~~~~~~~p~~~~~~~li~~~~~~g~~~eA~~~~~~m~~-~p-~~~~~~~ll~a~~~~g~~~~ 624 (809)
.....-.+++|.++++..... .-..+.....+.++++++.+.++.-.. .| ...+|-.+..+..+.++.+.
T Consensus 466 v~~d~s~yEkawElsn~~sar--------A~r~~~~~~~~~~~fs~~~~hle~sl~~nplq~~~wf~~G~~ALqlek~q~ 537 (777)
T KOG1128|consen 466 VLHDPSLYEKAWELSNYISAR--------AQRSLALLILSNKDFSEADKHLERSLEINPLQLGTWFGLGCAALQLEKEQA 537 (777)
T ss_pred hccChHHHHHHHHHhhhhhHH--------HHHhhccccccchhHHHHHHHHHHHhhcCccchhHHHhccHHHHHHhhhHH
Confidence 777777777787777654322 111122222345666666666654332 22 33466666666666666666
Q ss_pred HHHHHHHHhccCCCCCccHHhHhhhhhhcCChhHHHHHHHHHHhCC
Q 003584 625 GERAANNLFELEPMNAMPYVQLSNMYSTAGKWEDAARVRKLMKSRG 670 (809)
Q Consensus 625 A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~ 670 (809)
|.+.|.....++|++...+++++-+|.+.|+..+|...+++..+.+
T Consensus 538 av~aF~rcvtL~Pd~~eaWnNls~ayi~~~~k~ra~~~l~EAlKcn 583 (777)
T KOG1128|consen 538 AVKAFHRCVTLEPDNAEAWNNLSTAYIRLKKKKRAFRKLKEALKCN 583 (777)
T ss_pred HHHHHHHHhhcCCCchhhhhhhhHHHHHHhhhHHHHHHHHHHhhcC
Confidence 6666766666777666667777666766666666666666666554
No 122
>TIGR03302 OM_YfiO outer membrane assembly lipoprotein YfiO. Members of this protein family include YfiO, a near-essential protein of the outer membrane, part of a complex involved in protein insertion into the bacterial outer membrane. Many proteins in this family are annotated as ComL, based on the involvement of this protein in natural transformation with exogenous DNA in Neisseria gonorrhoeae. This protein family shows sequence similarity to, but is distinct from, the tol-pal system protein YbgF (TIGR02795).
Probab=98.20 E-value=5.3e-05 Score=75.52 Aligned_cols=181 Identities=13% Similarity=0.052 Sum_probs=127.7
Q ss_pred CHhHHHHHHHHHhcccchhHHHHHHHHHHHhCCCC--ChhHHhHHHHHHHhcCCHHHHHHHHHhcCC--CC-ee---ech
Q 003584 436 DHVVVSSILSACAELTVLEFGQQVHAVFLKSGGCS--SLSVDNSLVLVYAKCGCINDANRVFDSMHT--RD-VI---TWT 507 (809)
Q Consensus 436 ~~~t~~~ll~a~~~~~~~~~a~~~~~~~~~~g~~~--~~~~~~~li~~y~k~g~~~~A~~~~~~~~~--~~-~~---~~~ 507 (809)
....+......+...|+++.|...+..+++..... ....+..+...|.+.|++++|...|+++.+ |+ .. +|.
T Consensus 32 ~~~~~~~~g~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~a~~~la~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~a~~ 111 (235)
T TIGR03302 32 PAEELYEEAKEALDSGDYTEAIKYFEALESRYPFSPYAEQAQLDLAYAYYKSGDYAEAIAAADRFIRLHPNHPDADYAYY 111 (235)
T ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCchhHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHCcCCCchHHHHH
Confidence 45566677778889999999999999988765321 124667788999999999999999999863 32 22 355
Q ss_pred HHHHHHHhc--------CChHHHHHHHHHHHHCCCCCCHH-HHHHHHHHHHccCCHHHHHHHHHHhHHhhCCCCChHHHH
Q 003584 508 ALIMGCAQN--------GKGKEALQFYDQMLARGTKPDYI-TFVGLLFACSHAGLAENARWYFESMDKVYGIKPGPDHYA 578 (809)
Q Consensus 508 ~li~~~~~~--------g~~~~A~~l~~~m~~~g~~pd~~-t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~~~~~~ 578 (809)
.+..++.+. |+.++|.+.|+++... .|+.. ....+..... . ..... ....
T Consensus 112 ~~g~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~--~p~~~~~~~a~~~~~~----~------~~~~~---------~~~~ 170 (235)
T TIGR03302 112 LRGLSNYNQIDRVDRDQTAAREAFEAFQELIRR--YPNSEYAPDAKKRMDY----L------RNRLA---------GKEL 170 (235)
T ss_pred HHHHHHHHhcccccCCHHHHHHHHHHHHHHHHH--CCCChhHHHHHHHHHH----H------HHHHH---------HHHH
Confidence 555566554 7889999999999884 56543 2222111100 0 00000 1123
Q ss_pred HHHHHHhhcCCHHHHHHHHHhCcCC-C----CHHHHHHHHHHHHhcCChhHHHHHHHHHhccCC
Q 003584 579 CMIDLLGRSGKLIEAKALLDQMVGE-P----DATVWKALLSACRVHGDLELGERAANNLFELEP 637 (809)
Q Consensus 579 ~li~~~~~~g~~~eA~~~~~~m~~~-p----~~~~~~~ll~a~~~~g~~~~A~~~~~~~~~~~p 637 (809)
.+.+.|.+.|++++|...+++.... | ....|..++.++...|+.++|...++.+....|
T Consensus 171 ~~a~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~a~~~l~~~~~~lg~~~~A~~~~~~l~~~~~ 234 (235)
T TIGR03302 171 YVARFYLKRGAYVAAINRFETVVENYPDTPATEEALARLVEAYLKLGLKDLAQDAAAVLGANYP 234 (235)
T ss_pred HHHHHHHHcCChHHHHHHHHHHHHHCCCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCC
Confidence 5677889999999999999887642 3 245899999999999999999998888766555
No 123
>PRK15179 Vi polysaccharide biosynthesis protein TviE; Provisional
Probab=98.16 E-value=0.00011 Score=83.43 Aligned_cols=143 Identities=13% Similarity=0.079 Sum_probs=116.9
Q ss_pred CCCCChhHHhHHHHHHHhcCCHHHHHHHHHhcC--CCC-eeechHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHH-HHH
Q 003584 467 GGCSSLSVDNSLVLVYAKCGCINDANRVFDSMH--TRD-VITWTALIMGCAQNGKGKEALQFYDQMLARGTKPDYI-TFV 542 (809)
Q Consensus 467 g~~~~~~~~~~li~~y~k~g~~~~A~~~~~~~~--~~~-~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~pd~~-t~~ 542 (809)
..+.+...+-.|.......|.+++|..+++... .|| ...+..+...+.+.+++++|+..+++.... .|+.. ...
T Consensus 81 ~~~~~~~~~~~La~i~~~~g~~~ea~~~l~~~~~~~Pd~~~a~~~~a~~L~~~~~~eeA~~~~~~~l~~--~p~~~~~~~ 158 (694)
T PRK15179 81 RYPHTELFQVLVARALEAAHRSDEGLAVWRGIHQRFPDSSEAFILMLRGVKRQQGIEAGRAEIELYFSG--GSSSAREIL 158 (694)
T ss_pred hccccHHHHHHHHHHHHHcCCcHHHHHHHHHHHhhCCCcHHHHHHHHHHHHHhccHHHHHHHHHHHhhc--CCCCHHHHH
Confidence 445668888889999999999999999999887 454 457778889999999999999999999984 67765 556
Q ss_pred HHHHHHHccCCHHHHHHHHHHhHHhhCCCCChHHHHHHHHHHhhcCCHHHHHHHHHhCcC--CCCHHHHHHHH
Q 003584 543 GLLFACSHAGLAENARWYFESMDKVYGIKPGPDHYACMIDLLGRSGKLIEAKALLDQMVG--EPDATVWKALL 613 (809)
Q Consensus 543 ~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~~~~~~~li~~~~~~g~~~eA~~~~~~m~~--~p~~~~~~~ll 613 (809)
.+..++.+.|+.++|..+|+++.. ...-+...+..+..++...|+.++|...|++... .|....|+.++
T Consensus 159 ~~a~~l~~~g~~~~A~~~y~~~~~--~~p~~~~~~~~~a~~l~~~G~~~~A~~~~~~a~~~~~~~~~~~~~~~ 229 (694)
T PRK15179 159 LEAKSWDEIGQSEQADACFERLSR--QHPEFENGYVGWAQSLTRRGALWRARDVLQAGLDAIGDGARKLTRRL 229 (694)
T ss_pred HHHHHHHHhcchHHHHHHHHHHHh--cCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhCcchHHHHHHH
Confidence 677788999999999999999985 2223467888899999999999999999999875 35555555554
No 124
>COG5010 TadD Flp pilus assembly protein TadD, contains TPR repeats [Intracellular trafficking and secretion]
Probab=98.15 E-value=0.00012 Score=69.60 Aligned_cols=154 Identities=13% Similarity=0.081 Sum_probs=93.3
Q ss_pred hHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHhHHhhCCCCChHHHHHHHHHHhh
Q 003584 507 TALIMGCAQNGKGKEALQFYDQMLARGTKPDYITFVGLLFACSHAGLAENARWYFESMDKVYGIKPGPDHYACMIDLLGR 586 (809)
Q Consensus 507 ~~li~~~~~~g~~~~A~~l~~~m~~~g~~pd~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~~~~~~~li~~~~~ 586 (809)
..+-..+...|+.+.+..+..+.... ..-|.......+......|++.+|...+++... .-++|...|+.+.-.|.+
T Consensus 70 ~~~a~a~~~~G~a~~~l~~~~~~~~~-~~~d~~ll~~~gk~~~~~g~~~~A~~~~rkA~~--l~p~d~~~~~~lgaaldq 146 (257)
T COG5010 70 AKLATALYLRGDADSSLAVLQKSAIA-YPKDRELLAAQGKNQIRNGNFGEAVSVLRKAAR--LAPTDWEAWNLLGAALDQ 146 (257)
T ss_pred HHHHHHHHhcccccchHHHHhhhhcc-CcccHHHHHHHHHHHHHhcchHHHHHHHHHHhc--cCCCChhhhhHHHHHHHH
Confidence 33444555566666666555554331 122223334455666666666666666666553 444556666666666666
Q ss_pred cCCHHHHHHHHHhCcC--CCCHHHHHHHHHHHHhcCChhHHHHHHHHHhccCCCCCccHHhHhhhhhhcCChhHHHHHH
Q 003584 587 SGKLIEAKALLDQMVG--EPDATVWKALLSACRVHGDLELGERAANNLFELEPMNAMPYVQLSNMYSTAGKWEDAARVR 663 (809)
Q Consensus 587 ~g~~~eA~~~~~~m~~--~p~~~~~~~ll~a~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~ 663 (809)
.|++++|..-|.+... ..++.+.+.|...+...|+.+.|+.++..+....+.++..-..|.-+....|+.++|..+.
T Consensus 147 ~Gr~~~Ar~ay~qAl~L~~~~p~~~nNlgms~~L~gd~~~A~~lll~a~l~~~ad~~v~~NLAl~~~~~g~~~~A~~i~ 225 (257)
T COG5010 147 LGRFDEARRAYRQALELAPNEPSIANNLGMSLLLRGDLEDAETLLLPAYLSPAADSRVRQNLALVVGLQGDFREAEDIA 225 (257)
T ss_pred ccChhHHHHHHHHHHHhccCCchhhhhHHHHHHHcCCHHHHHHHHHHHHhCCCCchHHHHHHHHHHhhcCChHHHHhhc
Confidence 7777666666665553 2344566677777777777777777777666666666666666776777777777766554
No 125
>TIGR00756 PPR pentatricopeptide repeat domain (PPR motif). This family has a similar consensus to the TPR domain (tetratricopeptide), pfam pfam00515, a 33-residue repeat. It is predicted to form a pair of antiparallel helices similar to that of TPR.
Probab=98.13 E-value=4.1e-06 Score=54.68 Aligned_cols=35 Identities=31% Similarity=0.565 Sum_probs=32.7
Q ss_pred ccHHHHHHHHhhCCChHHHHHHHHHHHHCCCCCCc
Q 003584 201 VAWTTMITGYSQNGYGFKAIECFRDMRVEGVESNQ 235 (809)
Q Consensus 201 ~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~ 235 (809)
++||++|.+|++.|++++|.++|++|.+.|++||.
T Consensus 1 ~~~n~li~~~~~~~~~~~a~~~~~~M~~~g~~p~~ 35 (35)
T TIGR00756 1 VTYNTLIDGLCKAGRVEEALELFKEMLERGIEPDV 35 (35)
T ss_pred CcHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCCCC
Confidence 47999999999999999999999999999999984
No 126
>KOG1070 consensus rRNA processing protein Rrp5 [RNA processing and modification]
Probab=98.13 E-value=0.0004 Score=80.06 Aligned_cols=202 Identities=13% Similarity=0.083 Sum_probs=151.6
Q ss_pred ccHHHHHHHhhcCCChHHHHHHHHHHHHh-cc---CCchHHHHHHHHHHHhcCCHHHHHHHHhhcCCC-C-HhHHHHHHH
Q 003584 337 FTYPSVLNCFASNIDLNNAKSVHSLIVKT-GF---EGYKFVNNALIDMYAKQGNLDCAFMVFNLMQDK-D-VISWTSLIT 410 (809)
Q Consensus 337 ~t~~~ll~~~~~~~~~~~a~~i~~~~~~~-g~---~~~~~~~~~li~~y~~~g~~~~A~~~f~~~~~~-~-~~~~~~li~ 410 (809)
..|..-|.-....++.+.|+++.+++++. ++ +--..+|.+++++-..-|.-+...++|++..+- | ...|..|..
T Consensus 1459 i~WI~YMaf~LelsEiekAR~iaerAL~tIN~REeeEKLNiWiA~lNlEn~yG~eesl~kVFeRAcqycd~~~V~~~L~~ 1538 (1710)
T KOG1070|consen 1459 ILWIRYMAFHLELSEIEKARKIAERALKTINFREEEEKLNIWIAYLNLENAYGTEESLKKVFERACQYCDAYTVHLKLLG 1538 (1710)
T ss_pred hHHHHHHHHHhhhhhhHHHHHHHHHHhhhCCcchhHHHHHHHHHHHhHHHhhCcHHHHHHHHHHHHHhcchHHHHHHHHH
Confidence 44556666666777777777777776653 11 112346777777777777778888888887762 3 356778888
Q ss_pred HHHhcCCHHHHHHHHHHHhhcCCccCHhHHHHHHHHHhcccchhHHHHHHHHHHHhCCC-CChhHHhHHHHHHHhcCCHH
Q 003584 411 GCAYHGSYEEALKYFSDMRISGICPDHVVVSSILSACAELTVLEFGQQVHAVFLKSGGC-SSLSVDNSLVLVYAKCGCIN 489 (809)
Q Consensus 411 ~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~~~~~~a~~~~~~~~~~g~~-~~~~~~~~li~~y~k~g~~~ 489 (809)
.|.+.+.+++|.++++.|.+. +.-....|...+..+.+...-+.|..++..+++.-.. ..+.+..-.+++-.++|+.+
T Consensus 1539 iy~k~ek~~~A~ell~~m~KK-F~q~~~vW~~y~~fLl~~ne~~aa~~lL~rAL~~lPk~eHv~~IskfAqLEFk~GDae 1617 (1710)
T KOG1070|consen 1539 IYEKSEKNDEADELLRLMLKK-FGQTRKVWIMYADFLLRQNEAEAARELLKRALKSLPKQEHVEFISKFAQLEFKYGDAE 1617 (1710)
T ss_pred HHHHhhcchhHHHHHHHHHHH-hcchhhHHHHHHHHHhcccHHHHHHHHHHHHHhhcchhhhHHHHHHHHHHHhhcCCch
Confidence 888888888888888888874 2345667777777888888888888888877765322 24556667788888999999
Q ss_pred HHHHHHHhcC---CCCeeechHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHH
Q 003584 490 DANRVFDSMH---TRDVITWTALIMGCAQNGKGKEALQFYDQMLARGTKPDYI 539 (809)
Q Consensus 490 ~A~~~~~~~~---~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~pd~~ 539 (809)
.++.+|+... .+-...|+..|..-.++|+.+.+..+|++....++.|-..
T Consensus 1618 RGRtlfEgll~ayPKRtDlW~VYid~eik~~~~~~vR~lfeRvi~l~l~~kkm 1670 (1710)
T KOG1070|consen 1618 RGRTLFEGLLSAYPKRTDLWSVYIDMEIKHGDIKYVRDLFERVIELKLSIKKM 1670 (1710)
T ss_pred hhHHHHHHHHhhCccchhHHHHHHHHHHccCCHHHHHHHHHHHHhcCCChhHh
Confidence 9999999877 3466789999999999999999999999999988877543
No 127
>COG4783 Putative Zn-dependent protease, contains TPR repeats [General function prediction only]
Probab=98.09 E-value=0.00056 Score=70.94 Aligned_cols=143 Identities=20% Similarity=0.158 Sum_probs=111.6
Q ss_pred chHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHH-HHHHHHHccCCHHHHHHHHHHhHHhhCCCCC-hHHHHHHHHH
Q 003584 506 WTALIMGCAQNGKGKEALQFYDQMLARGTKPDYITFV-GLLFACSHAGLAENARWYFESMDKVYGIKPG-PDHYACMIDL 583 (809)
Q Consensus 506 ~~~li~~~~~~g~~~~A~~l~~~m~~~g~~pd~~t~~-~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~-~~~~~~li~~ 583 (809)
+-.....+...|++++|+..++.++.. .||...|. .....+...++..+|.+.++.+. ...|+ ....-.+..+
T Consensus 309 ~YG~A~~~~~~~~~d~A~~~l~~L~~~--~P~N~~~~~~~~~i~~~~nk~~~A~e~~~kal---~l~P~~~~l~~~~a~a 383 (484)
T COG4783 309 QYGRALQTYLAGQYDEALKLLQPLIAA--QPDNPYYLELAGDILLEANKAKEAIERLKKAL---ALDPNSPLLQLNLAQA 383 (484)
T ss_pred HHHHHHHHHHhcccchHHHHHHHHHHh--CCCCHHHHHHHHHHHHHcCChHHHHHHHHHHH---hcCCCccHHHHHHHHH
Confidence 333444566788999999999998875 66666555 45567888999999999998887 45666 4556677889
Q ss_pred HhhcCCHHHHHHHHHhCcC--CCCHHHHHHHHHHHHhcCChhHHHHHHHHHhccCCCCCccHHhHhhhhhhcCChhHHHH
Q 003584 584 LGRSGKLIEAKALLDQMVG--EPDATVWKALLSACRVHGDLELGERAANNLFELEPMNAMPYVQLSNMYSTAGKWEDAAR 661 (809)
Q Consensus 584 ~~~~g~~~eA~~~~~~m~~--~p~~~~~~~ll~a~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~ 661 (809)
|.+.|++.+|..+++.... +.|+..|..|..+|...|+..++....- ..|.-.|+|++|..
T Consensus 384 ll~~g~~~eai~~L~~~~~~~p~dp~~w~~LAqay~~~g~~~~a~~A~A-----------------E~~~~~G~~~~A~~ 446 (484)
T COG4783 384 LLKGGKPQEAIRILNRYLFNDPEDPNGWDLLAQAYAELGNRAEALLARA-----------------EGYALAGRLEQAII 446 (484)
T ss_pred HHhcCChHHHHHHHHHHhhcCCCCchHHHHHHHHHHHhCchHHHHHHHH-----------------HHHHhCCCHHHHHH
Confidence 9999999999999987764 3467799999999999999888776543 45777899999999
Q ss_pred HHHHHHhCC
Q 003584 662 VRKLMKSRG 670 (809)
Q Consensus 662 ~~~~m~~~~ 670 (809)
.....+++.
T Consensus 447 ~l~~A~~~~ 455 (484)
T COG4783 447 FLMRASQQV 455 (484)
T ss_pred HHHHHHHhc
Confidence 998887763
No 128
>TIGR00756 PPR pentatricopeptide repeat domain (PPR motif). This family has a similar consensus to the TPR domain (tetratricopeptide), pfam pfam00515, a 33-residue repeat. It is predicted to form a pair of antiparallel helices similar to that of TPR.
Probab=98.06 E-value=6.3e-06 Score=53.77 Aligned_cols=35 Identities=40% Similarity=0.783 Sum_probs=32.1
Q ss_pred eechHHHHHHHhcCChHHHHHHHHHHHHCCCCCCH
Q 003584 504 ITWTALIMGCAQNGKGKEALQFYDQMLARGTKPDY 538 (809)
Q Consensus 504 ~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~pd~ 538 (809)
.+||+||.+|++.|++++|.++|++|.+.|++||.
T Consensus 1 ~~~n~li~~~~~~~~~~~a~~~~~~M~~~g~~p~~ 35 (35)
T TIGR00756 1 VTYNTLIDGLCKAGRVEEALELFKEMLERGIEPDV 35 (35)
T ss_pred CcHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCCCC
Confidence 47999999999999999999999999999999973
No 129
>TIGR02552 LcrH_SycD type III secretion low calcium response chaperone LcrH/SycD. ScyD/LcrH contains three central tetratricopeptide-like repeats that are predicted to fold into an all-alpha-helical array.
Probab=98.04 E-value=4e-05 Score=68.77 Aligned_cols=95 Identities=19% Similarity=0.268 Sum_probs=78.7
Q ss_pred HHHHHHHHHHhhcCCHHHHHHHHHhCcC-C-CCHHHHHHHHHHHHhcCChhHHHHHHHHHhccCCCCCccHHhHhhhhhh
Q 003584 575 DHYACMIDLLGRSGKLIEAKALLDQMVG-E-PDATVWKALLSACRVHGDLELGERAANNLFELEPMNAMPYVQLSNMYST 652 (809)
Q Consensus 575 ~~~~~li~~~~~~g~~~eA~~~~~~m~~-~-p~~~~~~~ll~a~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~ 652 (809)
.....++..+...|++++|.+.++.... . .+...|..+...+...|+++.|...++++++.+|+++..+..++.+|..
T Consensus 18 ~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~la~~~~~ 97 (135)
T TIGR02552 18 EQIYALAYNLYQQGRYDEALKLFQLLAAYDPYNSRYWLGLAACCQMLKEYEEAIDAYALAAALDPDDPRPYFHAAECLLA 97 (135)
T ss_pred HHHHHHHHHHHHcccHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCChHHHHHHHHHHHH
Confidence 4455667777888888888888877654 3 3566888888888889999999999999999999999999999999999
Q ss_pred cCChhHHHHHHHHHHhC
Q 003584 653 AGKWEDAARVRKLMKSR 669 (809)
Q Consensus 653 ~g~~~~A~~~~~~m~~~ 669 (809)
.|++++|...++...+.
T Consensus 98 ~g~~~~A~~~~~~al~~ 114 (135)
T TIGR02552 98 LGEPESALKALDLAIEI 114 (135)
T ss_pred cCCHHHHHHHHHHHHHh
Confidence 99999999999887765
No 130
>PLN02789 farnesyltranstransferase
Probab=98.02 E-value=0.00037 Score=71.75 Aligned_cols=183 Identities=11% Similarity=0.112 Sum_probs=133.3
Q ss_pred HHHHhcCCHHHHHHHHHhcCC--C-CeeechHHHHHHHhcC-ChHHHHHHHHHHHHCCCCCCH-HHHHHHHHHHHccCCH
Q 003584 480 LVYAKCGCINDANRVFDSMHT--R-DVITWTALIMGCAQNG-KGKEALQFYDQMLARGTKPDY-ITFVGLLFACSHAGLA 554 (809)
Q Consensus 480 ~~y~k~g~~~~A~~~~~~~~~--~-~~~~~~~li~~~~~~g-~~~~A~~l~~~m~~~g~~pd~-~t~~~ll~a~~~~g~~ 554 (809)
..+.+.++.++|..+.+++.+ | +..+|+.....+...| ++++++..++++.+. .|+. .+|..-...+.+.|..
T Consensus 45 a~l~~~e~serAL~lt~~aI~lnP~~ytaW~~R~~iL~~L~~~l~eeL~~~~~~i~~--npknyqaW~~R~~~l~~l~~~ 122 (320)
T PLN02789 45 AVYASDERSPRALDLTADVIRLNPGNYTVWHFRRLCLEALDADLEEELDFAEDVAED--NPKNYQIWHHRRWLAEKLGPD 122 (320)
T ss_pred HHHHcCCCCHHHHHHHHHHHHHCchhHHHHHHHHHHHHHcchhHHHHHHHHHHHHHH--CCcchHHhHHHHHHHHHcCch
Confidence 345556788888888887763 2 4456777666777777 579999999999985 4443 4565554455566653
Q ss_pred --HHHHHHHHHhHHhhCCCC-ChHHHHHHHHHHhhcCCHHHHHHHHHhCcC--CCCHHHHHHHHHHHHhc---CCh----
Q 003584 555 --ENARWYFESMDKVYGIKP-GPDHYACMIDLLGRSGKLIEAKALLDQMVG--EPDATVWKALLSACRVH---GDL---- 622 (809)
Q Consensus 555 --~~a~~~~~~m~~~~~~~p-~~~~~~~li~~~~~~g~~~eA~~~~~~m~~--~p~~~~~~~ll~a~~~~---g~~---- 622 (809)
+++..+++.+.+ ..| +...|+...-++.+.|++++|++.++++.. ..|..+|+.....+... |..
T Consensus 123 ~~~~el~~~~kal~---~dpkNy~AW~~R~w~l~~l~~~~eeL~~~~~~I~~d~~N~sAW~~R~~vl~~~~~l~~~~~~~ 199 (320)
T PLN02789 123 AANKELEFTRKILS---LDAKNYHAWSHRQWVLRTLGGWEDELEYCHQLLEEDVRNNSAWNQRYFVITRSPLLGGLEAMR 199 (320)
T ss_pred hhHHHHHHHHHHHH---hCcccHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHCCCchhHHHHHHHHHHhccccccccccH
Confidence 677888877764 344 567788888888899999999999999875 35677898888777655 222
Q ss_pred hHHHHHHHHHhccCCCCCccHHhHhhhhhhc----CChhHHHHHHHHHH
Q 003584 623 ELGERAANNLFELEPMNAMPYVQLSNMYSTA----GKWEDAARVRKLMK 667 (809)
Q Consensus 623 ~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~----g~~~~A~~~~~~m~ 667 (809)
+.++....++++++|+|..++..+..+|... ++..+|.+......
T Consensus 200 e~el~y~~~aI~~~P~N~SaW~Yl~~ll~~~~~~l~~~~~~~~~~~~~~ 248 (320)
T PLN02789 200 DSELKYTIDAILANPRNESPWRYLRGLFKDDKEALVSDPEVSSVCLEVL 248 (320)
T ss_pred HHHHHHHHHHHHhCCCCcCHHHHHHHHHhcCCcccccchhHHHHHHHhh
Confidence 4677778899999999999999999999873 34456766665543
No 131
>COG4783 Putative Zn-dependent protease, contains TPR repeats [General function prediction only]
Probab=97.96 E-value=0.00043 Score=71.72 Aligned_cols=120 Identities=18% Similarity=0.140 Sum_probs=104.6
Q ss_pred HHHccCCHHHHHHHHHHhHHhhCCCCChHHHHHHHHHHhhcCCHHHHHHHHHhCcC-CCC-HHHHHHHHHHHHhcCChhH
Q 003584 547 ACSHAGLAENARWYFESMDKVYGIKPGPDHYACMIDLLGRSGKLIEAKALLDQMVG-EPD-ATVWKALLSACRVHGDLEL 624 (809)
Q Consensus 547 a~~~~g~~~~a~~~~~~m~~~~~~~p~~~~~~~li~~~~~~g~~~eA~~~~~~m~~-~p~-~~~~~~ll~a~~~~g~~~~ 624 (809)
.+...|..++|...++.+.. ..+-|+.......+.+.+.++.++|.+.++++.. .|+ ...|-++..++.+.|+..+
T Consensus 315 ~~~~~~~~d~A~~~l~~L~~--~~P~N~~~~~~~~~i~~~~nk~~~A~e~~~kal~l~P~~~~l~~~~a~all~~g~~~e 392 (484)
T COG4783 315 QTYLAGQYDEALKLLQPLIA--AQPDNPYYLELAGDILLEANKAKEAIERLKKALALDPNSPLLQLNLAQALLKGGKPQE 392 (484)
T ss_pred HHHHhcccchHHHHHHHHHH--hCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCCccHHHHHHHHHHHhcCChHH
Confidence 45567899999999999875 3334556666778999999999999999999886 476 5688999999999999999
Q ss_pred HHHHHHHHhccCCCCCccHHhHhhhhhhcCChhHHHHHHHHHHh
Q 003584 625 GERAANNLFELEPMNAMPYVQLSNMYSTAGKWEDAARVRKLMKS 668 (809)
Q Consensus 625 A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~ 668 (809)
|+..++....-+|+++..|..|+.+|...|+..+|...+.++-.
T Consensus 393 ai~~L~~~~~~~p~dp~~w~~LAqay~~~g~~~~a~~A~AE~~~ 436 (484)
T COG4783 393 AIRILNRYLFNDPEDPNGWDLLAQAYAELGNRAEALLARAEGYA 436 (484)
T ss_pred HHHHHHHHhhcCCCCchHHHHHHHHHHHhCchHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999988877653
No 132
>KOG1914 consensus mRNA cleavage and polyadenylation factor I complex, subunit RNA14 [RNA processing and modification]
Probab=97.96 E-value=0.038 Score=58.28 Aligned_cols=143 Identities=15% Similarity=0.130 Sum_probs=79.5
Q ss_pred hhHHHHHHHHHHHCCCCCCcccHHHHHHHhhcCCChHHHHHHHHHHHHhccCC-chHHHHHHHHHHHhcCCHHHHHHHHh
Q 003584 317 HKEALSLFKKMHARDIKIDDFTYPSVLNCFASNIDLNNAKSVHSLIVKTGFEG-YKFVNNALIDMYAKQGNLDCAFMVFN 395 (809)
Q Consensus 317 ~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~i~~~~~~~g~~~-~~~~~~~li~~y~~~g~~~~A~~~f~ 395 (809)
.+.....++++...-..--..+|...|+...+..-+..|+.+|..+.+.+..+ ++.+.++++..|+ .++.+-|.++|+
T Consensus 347 ~~~~~~~~~~ll~~~~~~~tLv~~~~mn~irR~eGlkaaR~iF~kaR~~~r~~hhVfVa~A~mEy~c-skD~~~AfrIFe 425 (656)
T KOG1914|consen 347 EKKVHEIYNKLLKIEDIDLTLVYCQYMNFIRRAEGLKAARKIFKKAREDKRTRHHVFVAAALMEYYC-SKDKETAFRIFE 425 (656)
T ss_pred hhhhHHHHHHHHhhhccCCceehhHHHHHHHHhhhHHHHHHHHHHHhhccCCcchhhHHHHHHHHHh-cCChhHHHHHHH
Confidence 34444555555443222223456666666666667777777777777766655 6667777777655 355666666666
Q ss_pred hcCC--C-CHhHHHHHHHHHHhcCCHHHHHHHHHHHhhcCCccCH--hHHHHHHHHHhcccchhHHHHHH
Q 003584 396 LMQD--K-DVISWTSLITGCAYHGSYEEALKYFSDMRISGICPDH--VVVSSILSACAELTVLEFGQQVH 460 (809)
Q Consensus 396 ~~~~--~-~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~--~t~~~ll~a~~~~~~~~~a~~~~ 460 (809)
.-.. + ++.--+..+.-+...|+-..|..+|++....++.||. ..|..+|.-=++.|++.....+-
T Consensus 426 LGLkkf~d~p~yv~~YldfL~~lNdd~N~R~LFEr~l~s~l~~~ks~~Iw~r~l~yES~vGdL~si~~le 495 (656)
T KOG1914|consen 426 LGLKKFGDSPEYVLKYLDFLSHLNDDNNARALFERVLTSVLSADKSKEIWDRMLEYESNVGDLNSILKLE 495 (656)
T ss_pred HHHHhcCCChHHHHHHHHHHHHhCcchhHHHHHHHHHhccCChhhhHHHHHHHHHHHHhcccHHHHHHHH
Confidence 5432 2 2333344555555666666666666666665444442 34444444444444444444443
No 133
>PF09295 ChAPs: ChAPs (Chs5p-Arf1p-binding proteins); InterPro: IPR015374 ChAPs (Chs5p-Arf1p-binding proteins) are required for the export of specialised cargo from the Golgi. They physically interact with Chs3, Chs5 and the small GTPase Arf1, and they also form interactions with each other [].
Probab=97.95 E-value=0.00019 Score=75.22 Aligned_cols=122 Identities=20% Similarity=0.183 Sum_probs=102.5
Q ss_pred HHHHHHHHHccCCHHHHHHHHHHhHHhhCCCCChHHHHHHHHHHhhcCCHHHHHHHHHhCcCC-C-CHHHHHHHHHHHHh
Q 003584 541 FVGLLFACSHAGLAENARWYFESMDKVYGIKPGPDHYACMIDLLGRSGKLIEAKALLDQMVGE-P-DATVWKALLSACRV 618 (809)
Q Consensus 541 ~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~~~~~~~li~~~~~~g~~~eA~~~~~~m~~~-p-~~~~~~~ll~a~~~ 618 (809)
..+|+..+...+++++|.++|+++.+. .|+ ....|+..+...++-.+|.+++++...+ | |...+..-...|..
T Consensus 172 v~~Ll~~l~~t~~~~~ai~lle~L~~~---~pe--v~~~LA~v~l~~~~E~~AI~ll~~aL~~~p~d~~LL~~Qa~fLl~ 246 (395)
T PF09295_consen 172 VDTLLKYLSLTQRYDEAIELLEKLRER---DPE--VAVLLARVYLLMNEEVEAIRLLNEALKENPQDSELLNLQAEFLLS 246 (395)
T ss_pred HHHHHHHHhhcccHHHHHHHHHHHHhc---CCc--HHHHHHHHHHhcCcHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHh
Confidence 345667777788999999999988754 355 4455788888888889999998887752 4 55577777778899
Q ss_pred cCChhHHHHHHHHHhccCCCCCccHHhHhhhhhhcCChhHHHHHHHHHH
Q 003584 619 HGDLELGERAANNLFELEPMNAMPYVQLSNMYSTAGKWEDAARVRKLMK 667 (809)
Q Consensus 619 ~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~ 667 (809)
.++.+.|+.+++++.++.|++..+|..|+.+|...|++++|...++.+.
T Consensus 247 k~~~~lAL~iAk~av~lsP~~f~~W~~La~~Yi~~~d~e~ALlaLNs~P 295 (395)
T PF09295_consen 247 KKKYELALEIAKKAVELSPSEFETWYQLAECYIQLGDFENALLALNSCP 295 (395)
T ss_pred cCCHHHHHHHHHHHHHhCchhHHHHHHHHHHHHhcCCHHHHHHHHhcCc
Confidence 9999999999999999999999999999999999999999999998875
No 134
>PRK14720 transcript cleavage factor/unknown domain fusion protein; Provisional
Probab=97.94 E-value=0.00052 Score=78.67 Aligned_cols=46 Identities=13% Similarity=0.148 Sum_probs=38.5
Q ss_pred HHHHHHHHHHHHhcCChhHHHHHHHHHhccCCCCCccHHhHhhhhh
Q 003584 606 ATVWKALLSACRVHGDLELGERAANNLFELEPMNAMPYVQLSNMYS 651 (809)
Q Consensus 606 ~~~~~~ll~a~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~ 651 (809)
+.+|--|-.-|...++++++..+++.+++.+|.|..+..-++..|.
T Consensus 223 ~~~~~~l~~~y~~~~~~~~~i~iLK~iL~~~~~n~~a~~~l~~~y~ 268 (906)
T PRK14720 223 VGLLEDLYEPYKALEDWDEVIYILKKILEHDNKNNKAREELIRFYK 268 (906)
T ss_pred HHHHHHHHHHHhhhhhhhHHHHHHHHHHhcCCcchhhHHHHHHHHH
Confidence 3455556677888889999999999999999999988888888876
No 135
>KOG0624 consensus dsRNA-activated protein kinase inhibitor P58, contains TPR and DnaJ domains [Defense mechanisms]
Probab=97.93 E-value=0.028 Score=55.73 Aligned_cols=314 Identities=12% Similarity=0.051 Sum_probs=190.7
Q ss_pred HHHHHHHHhhCCChHHHHHHHHHHHHCCCCCCcchHHHHHH---HHhccCChHHHHHHHHHHHHhCCCCchhHH-HHHHH
Q 003584 203 WTTMITGYSQNGYGFKAIECFRDMRVEGVESNQFTFPSILT---ACAAVSARDFGAQVHGCILSSGFEANVYVQ-SALID 278 (809)
Q Consensus 203 ~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~---~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~-~~Li~ 278 (809)
.--+-..+.-+|++..|+.-|....+. |...|.++.+ .|...|....|..=+..+++. +||-... ---..
T Consensus 41 hlElGk~lla~~Q~sDALt~yHaAve~----dp~~Y~aifrRaT~yLAmGksk~al~Dl~rVlel--KpDF~~ARiQRg~ 114 (504)
T KOG0624|consen 41 HLELGKELLARGQLSDALTHYHAAVEG----DPNNYQAIFRRATVYLAMGKSKAALQDLSRVLEL--KPDFMAARIQRGV 114 (504)
T ss_pred HHHHHHHHHHhhhHHHHHHHHHHHHcC----CchhHHHHHHHHHHHhhhcCCccchhhHHHHHhc--CccHHHHHHHhch
Confidence 345667778889999999999887653 5555555543 466778888888777777766 4553321 12234
Q ss_pred HHHhCCChHHHHHHHhccCCCCeeeHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCcccHHHHHHHhhcCCChHHHHHH
Q 003584 279 MYAKCGDLDSARRLLEYSEIDNEVSWNSMIVGFARQGFHKEALSLFKKMHARDIKIDDFTYPSVLNCFASNIDLNNAKSV 358 (809)
Q Consensus 279 ~y~~~g~~~~A~~~f~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~i 358 (809)
.+.+.|.++.|..=|+.....++. -+....++.+.-..++-.. ....+..+...|+...+.+.
T Consensus 115 vllK~Gele~A~~DF~~vl~~~~s-~~~~~eaqskl~~~~e~~~----------------l~~ql~s~~~~GD~~~ai~~ 177 (504)
T KOG0624|consen 115 VLLKQGELEQAEADFDQVLQHEPS-NGLVLEAQSKLALIQEHWV----------------LVQQLKSASGSGDCQNAIEM 177 (504)
T ss_pred hhhhcccHHHHHHHHHHHHhcCCC-cchhHHHHHHHHhHHHHHH----------------HHHHHHHHhcCCchhhHHHH
Confidence 566778888888777765543221 0111112111111111111 22334445566777777777
Q ss_pred HHHHHHhccCCchHHHHHHHHHHHhcCCHHHHHHHHhhcC---CCCHhHHHHHHHHHHhcCCHHHHHHHHHHHhhcCCcc
Q 003584 359 HSLIVKTGFEGYKFVNNALIDMYAKQGNLDCAFMVFNLMQ---DKDVISWTSLITGCAYHGSYEEALKYFSDMRISGICP 435 (809)
Q Consensus 359 ~~~~~~~g~~~~~~~~~~li~~y~~~g~~~~A~~~f~~~~---~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p 435 (809)
...+++.. +.|...+..-..+|...|.+..|+.-+.... ..++....-+-..+...|+.+.++...++-.+. .|
T Consensus 178 i~~llEi~-~Wda~l~~~Rakc~i~~~e~k~AI~Dlk~askLs~DnTe~~ykis~L~Y~vgd~~~sL~~iRECLKl--dp 254 (504)
T KOG0624|consen 178 ITHLLEIQ-PWDASLRQARAKCYIAEGEPKKAIHDLKQASKLSQDNTEGHYKISQLLYTVGDAENSLKEIRECLKL--DP 254 (504)
T ss_pred HHHHHhcC-cchhHHHHHHHHHHHhcCcHHHHHHHHHHHHhccccchHHHHHHHHHHHhhhhHHHHHHHHHHHHcc--Cc
Confidence 77777654 5677777778888888888888877665543 356666666777778888888888888877754 56
Q ss_pred CHhHHHHHHHHHhcccchhHHHHHHHHHHHhCCCCChhHHhHHHHHHHhcCCHHHHHHHHHhcCC--CC--ee---echH
Q 003584 436 DHVVVSSILSACAELTVLEFGQQVHAVFLKSGGCSSLSVDNSLVLVYAKCGCINDANRVFDSMHT--RD--VI---TWTA 508 (809)
Q Consensus 436 ~~~t~~~ll~a~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~y~k~g~~~~A~~~~~~~~~--~~--~~---~~~~ 508 (809)
|....-.. |-+ +.+....+..+. .....+++.++.+-.+...+ |. .+ .+..
T Consensus 255 dHK~Cf~~---YKk---lkKv~K~les~e----------------~~ie~~~~t~cle~ge~vlk~ep~~~~ir~~~~r~ 312 (504)
T KOG0624|consen 255 DHKLCFPF---YKK---LKKVVKSLESAE----------------QAIEEKHWTECLEAGEKVLKNEPEETMIRYNGFRV 312 (504)
T ss_pred chhhHHHH---HHH---HHHHHHHHHHHH----------------HHHhhhhHHHHHHHHHHHHhcCCcccceeeeeehe
Confidence 64322111 111 111111111111 12234556666665555542 22 22 3344
Q ss_pred HHHHHHhcCChHHHHHHHHHHHHCCCCCC-HHHHHHHHHHHHccCCHHHHHHHHHHhHH
Q 003584 509 LIMGCAQNGKGKEALQFYDQMLARGTKPD-YITFVGLLFACSHAGLAENARWYFESMDK 566 (809)
Q Consensus 509 li~~~~~~g~~~~A~~l~~~m~~~g~~pd-~~t~~~ll~a~~~~g~~~~a~~~~~~m~~ 566 (809)
+-.+|...|++.+|++...+.++ +.|| ..++.--..||.-...++.|+.-|+...+
T Consensus 313 ~c~C~~~d~~~~eAiqqC~evL~--~d~~dv~~l~dRAeA~l~dE~YD~AI~dye~A~e 369 (504)
T KOG0624|consen 313 LCTCYREDEQFGEAIQQCKEVLD--IDPDDVQVLCDRAEAYLGDEMYDDAIHDYEKALE 369 (504)
T ss_pred eeecccccCCHHHHHHHHHHHHh--cCchHHHHHHHHHHHHhhhHHHHHHHHHHHHHHh
Confidence 55667778888899988888887 5666 45777778888888888888888877653
No 136
>PF13812 PPR_3: Pentatricopeptide repeat domain
Probab=97.92 E-value=1.5e-05 Score=51.58 Aligned_cols=34 Identities=18% Similarity=0.393 Sum_probs=30.3
Q ss_pred cccHHHHHHHHhhCCChHHHHHHHHHHHHCCCCC
Q 003584 200 HVAWTTMITGYSQNGYGFKAIECFRDMRVEGVES 233 (809)
Q Consensus 200 ~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p 233 (809)
+.+||.+|.+|++.|+++.|.++|++|.+.|++|
T Consensus 1 v~ty~~ll~a~~~~g~~~~a~~~~~~M~~~gv~P 34 (34)
T PF13812_consen 1 VHTYNALLRACAKAGDPDAALQLFDEMKEQGVKP 34 (34)
T ss_pred CcHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCC
Confidence 3589999999999999999999999999998887
No 137
>PF13812 PPR_3: Pentatricopeptide repeat domain
Probab=97.90 E-value=1.8e-05 Score=51.19 Aligned_cols=34 Identities=26% Similarity=0.447 Sum_probs=31.2
Q ss_pred cchHHHHHHHHHcCCCchhHHHHHHHHHHcCCCC
Q 003584 98 FFTWSSLIYGYSNYGLDIEAFELFWQMQLEGYRP 131 (809)
Q Consensus 98 ~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p 131 (809)
+.+||.+|.+|++.|+++.|.++|++|.+.|++|
T Consensus 1 v~ty~~ll~a~~~~g~~~~a~~~~~~M~~~gv~P 34 (34)
T PF13812_consen 1 VHTYNALLRACAKAGDPDAALQLFDEMKEQGVKP 34 (34)
T ss_pred CcHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCC
Confidence 3689999999999999999999999999999887
No 138
>KOG3081 consensus Vesicle coat complex COPI, epsilon subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=97.85 E-value=0.0053 Score=58.72 Aligned_cols=72 Identities=13% Similarity=0.144 Sum_probs=39.8
Q ss_pred CCHHHHHHHHHhCcC--CCCHHHHHHHHHHHHhcCChhHHHHHHHHHhccCCCCCccHHhHhhhhhhcCChhHH
Q 003584 588 GKLIEAKALLDQMVG--EPDATVWKALLSACRVHGDLELGERAANNLFELEPMNAMPYVQLSNMYSTAGKWEDA 659 (809)
Q Consensus 588 g~~~eA~~~~~~m~~--~p~~~~~~~ll~a~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A 659 (809)
+++.+|.-+|++|.. .|+..+.+-...++...|++++|+.+++.++..+|+++.+...++-.--..|+-.++
T Consensus 187 ek~qdAfyifeE~s~k~~~T~~llnG~Av~~l~~~~~eeAe~lL~eaL~kd~~dpetL~Nliv~a~~~Gkd~~~ 260 (299)
T KOG3081|consen 187 EKIQDAFYIFEELSEKTPPTPLLLNGQAVCHLQLGRYEEAESLLEEALDKDAKDPETLANLIVLALHLGKDAEV 260 (299)
T ss_pred hhhhhHHHHHHHHhcccCCChHHHccHHHHHHHhcCHHHHHHHHHHHHhccCCCHHHHHHHHHHHHHhCCChHH
Confidence 345555555555554 245555555555555556666666666666666666655555555555555555443
No 139
>TIGR02552 LcrH_SycD type III secretion low calcium response chaperone LcrH/SycD. ScyD/LcrH contains three central tetratricopeptide-like repeats that are predicted to fold into an all-alpha-helical array.
Probab=97.82 E-value=0.00035 Score=62.59 Aligned_cols=113 Identities=12% Similarity=0.029 Sum_probs=89.3
Q ss_pred HHHHHHHCCCCCCH-HHHHHHHHHHHccCCHHHHHHHHHHhHHhhCCCCChHHHHHHHHHHhhcCCHHHHHHHHHhCcC-
Q 003584 525 FYDQMLARGTKPDY-ITFVGLLFACSHAGLAENARWYFESMDKVYGIKPGPDHYACMIDLLGRSGKLIEAKALLDQMVG- 602 (809)
Q Consensus 525 l~~~m~~~g~~pd~-~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~~~~~~~li~~~~~~g~~~eA~~~~~~m~~- 602 (809)
+|++... ..|+. .....+...+...|++++|...++.+... -+.+...+..+...+.+.|++++|...+++...
T Consensus 5 ~~~~~l~--~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~--~p~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~ 80 (135)
T TIGR02552 5 TLKDLLG--LDSEQLEQIYALAYNLYQQGRYDEALKLFQLLAAY--DPYNSRYWLGLAACCQMLKEYEEAIDAYALAAAL 80 (135)
T ss_pred hHHHHHc--CChhhHHHHHHHHHHHHHcccHHHHHHHHHHHHHh--CCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 4555555 35554 34566777788899999999999887653 233667788889999999999999999988753
Q ss_pred -CCCHHHHHHHHHHHHhcCChhHHHHHHHHHhccCCCCCc
Q 003584 603 -EPDATVWKALLSACRVHGDLELGERAANNLFELEPMNAM 641 (809)
Q Consensus 603 -~p~~~~~~~ll~a~~~~g~~~~A~~~~~~~~~~~p~~~~ 641 (809)
+.+...|..+...+...|+.+.|...++++++++|++..
T Consensus 81 ~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~ 120 (135)
T TIGR02552 81 DPDDPRPYFHAAECLLALGEPESALKALDLAIEICGENPE 120 (135)
T ss_pred CCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhccccch
Confidence 345668888999999999999999999999999998765
No 140
>KOG3060 consensus Uncharacterized conserved protein [Function unknown]
Probab=97.78 E-value=0.0031 Score=59.82 Aligned_cols=161 Identities=16% Similarity=0.190 Sum_probs=113.6
Q ss_pred HHHhcCCHHHHHHHHHhcCCCCeeechHH---HHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCCHHHH
Q 003584 481 VYAKCGCINDANRVFDSMHTRDVITWTAL---IMGCAQNGKGKEALQFYDQMLARGTKPDYITFVGLLFACSHAGLAENA 557 (809)
Q Consensus 481 ~y~k~g~~~~A~~~~~~~~~~~~~~~~~l---i~~~~~~g~~~~A~~l~~~m~~~g~~pd~~t~~~ll~a~~~~g~~~~a 557 (809)
+..-+|+.+.|...++.+..+-+.++... ..-+-..|++++|+++++.+++.. +.|.+++..=+...-..|..-+|
T Consensus 61 AAld~~~~~lAq~C~~~L~~~fp~S~RV~~lkam~lEa~~~~~~A~e~y~~lL~dd-pt~~v~~KRKlAilka~GK~l~a 139 (289)
T KOG3060|consen 61 AALDTGRDDLAQKCINQLRDRFPGSKRVGKLKAMLLEATGNYKEAIEYYESLLEDD-PTDTVIRKRKLAILKAQGKNLEA 139 (289)
T ss_pred HHHHhcchHHHHHHHHHHHHhCCCChhHHHHHHHHHHHhhchhhHHHHHHHHhccC-cchhHHHHHHHHHHHHcCCcHHH
Confidence 33446667777777666552222222211 112456788999999999998875 55667777777777777877788
Q ss_pred HHHHHHhHHhhCCCCChHHHHHHHHHHhhcCCHHHHHHHHHhCcC-CC-CHHHHHHHHHHHHhcC---ChhHHHHHHHHH
Q 003584 558 RWYFESMDKVYGIKPGPDHYACMIDLLGRSGKLIEAKALLDQMVG-EP-DATVWKALLSACRVHG---DLELGERAANNL 632 (809)
Q Consensus 558 ~~~~~~m~~~~~~~p~~~~~~~li~~~~~~g~~~eA~~~~~~m~~-~p-~~~~~~~ll~a~~~~g---~~~~A~~~~~~~ 632 (809)
++-+....+ .+..|.+.|.-+.++|...|+++.|.-.++++.. .| ++..+..+...+...| |.+.|.+.|.++
T Consensus 140 Ik~ln~YL~--~F~~D~EAW~eLaeiY~~~~~f~kA~fClEE~ll~~P~n~l~f~rlae~~Yt~gg~eN~~~arkyy~~a 217 (289)
T KOG3060|consen 140 IKELNEYLD--KFMNDQEAWHELAEIYLSEGDFEKAAFCLEELLLIQPFNPLYFQRLAEVLYTQGGAENLELARKYYERA 217 (289)
T ss_pred HHHHHHHHH--HhcCcHHHHHHHHHHHHhHhHHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHHhhHHHHHHHHHHHHHH
Confidence 888877776 4667888899999999999999999999988764 45 4446666666655554 678888999999
Q ss_pred hccCCCCCccHH
Q 003584 633 FELEPMNAMPYV 644 (809)
Q Consensus 633 ~~~~p~~~~~~~ 644 (809)
+++.|.+...+.
T Consensus 218 lkl~~~~~ral~ 229 (289)
T KOG3060|consen 218 LKLNPKNLRALF 229 (289)
T ss_pred HHhChHhHHHHH
Confidence 999986554443
No 141
>KOG2053 consensus Mitochondrial inheritance and actin cytoskeleton organization protein [Cytoskeleton]
Probab=97.77 E-value=0.12 Score=58.09 Aligned_cols=91 Identities=16% Similarity=0.055 Sum_probs=45.6
Q ss_pred HHHHHHHHhhcCCHH---HHHHHHHhCcC-CC-CHHHHHHHHHHHHhcCChhHHHHHHHHHhccCCCCCccHHhHhhhhh
Q 003584 577 YACMIDLLGRSGKLI---EAKALLDQMVG-EP-DATVWKALLSACRVHGDLELGERAANNLFELEPMNAMPYVQLSNMYS 651 (809)
Q Consensus 577 ~~~li~~~~~~g~~~---eA~~~~~~m~~-~p-~~~~~~~ll~a~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~ 651 (809)
-+.|++++-+.++.. +|+-+++.-.. .| |..+=-.|+..|.-.|-+..|.+.|+-+--.+-...+.=..+...+.
T Consensus 439 v~~Lid~~rktnd~~~l~eaI~LLE~glt~s~hnf~~KLlLiriY~~lGa~p~a~~~y~tLdIK~IQ~DTlgh~~~~~~~ 518 (932)
T KOG2053|consen 439 VNHLIDLWRKTNDLTDLFEAITLLENGLTKSPHNFQTKLLLIRIYSYLGAFPDAYELYKTLDIKNIQTDTLGHLIFRRAE 518 (932)
T ss_pred HHHHHHHHHhcCcHHHHHHHHHHHHHHhhcCCccHHHHHHHHHHHHHhcCChhHHHHHHhcchHHhhhccchHHHHHHHH
Confidence 345666777666654 33333333332 22 33344456666766677777766666542111111111122334455
Q ss_pred hcCChhHHHHHHHHHH
Q 003584 652 TAGKWEDAARVRKLMK 667 (809)
Q Consensus 652 ~~g~~~~A~~~~~~m~ 667 (809)
..|+|..+...+..-.
T Consensus 519 t~g~~~~~s~~~~~~l 534 (932)
T KOG2053|consen 519 TSGRSSFASNTFNEHL 534 (932)
T ss_pred hcccchhHHHHHHHHH
Confidence 6667777766665543
No 142
>PF09976 TPR_21: Tetratricopeptide repeat; InterPro: IPR018704 This domain, found in various hypothetical prokaryotic proteins, has no known function.
Probab=97.77 E-value=0.00062 Score=61.75 Aligned_cols=114 Identities=20% Similarity=0.224 Sum_probs=61.8
Q ss_pred cCCHHHHHHHHHHhHHhhCCCC-ChHHHHHHHHHHhhcCCHHHHHHHHHhCcCC-CCH----HHHHHHHHHHHhcCChhH
Q 003584 551 AGLAENARWYFESMDKVYGIKP-GPDHYACMIDLLGRSGKLIEAKALLDQMVGE-PDA----TVWKALLSACRVHGDLEL 624 (809)
Q Consensus 551 ~g~~~~a~~~~~~m~~~~~~~p-~~~~~~~li~~~~~~g~~~eA~~~~~~m~~~-p~~----~~~~~ll~a~~~~g~~~~ 624 (809)
.++...+...++.+.+.++-.| .....-.+...+...|++++|...|+..... ||. ..+..|...+...|++++
T Consensus 24 ~~~~~~~~~~~~~l~~~~~~s~ya~~A~l~lA~~~~~~g~~~~A~~~l~~~~~~~~d~~l~~~a~l~LA~~~~~~~~~d~ 103 (145)
T PF09976_consen 24 AGDPAKAEAAAEQLAKDYPSSPYAALAALQLAKAAYEQGDYDEAKAALEKALANAPDPELKPLARLRLARILLQQGQYDE 103 (145)
T ss_pred CCCHHHHHHHHHHHHHHCCCChHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHhhCCCHHHHHHHHHHHHHHHHHcCCHHH
Confidence 4555555555555555422221 1122233445566666666666666665542 332 134445566666666666
Q ss_pred HHHHHHHHhccCCCCCccHHhHhhhhhhcCChhHHHHHHHH
Q 003584 625 GERAANNLFELEPMNAMPYVQLSNMYSTAGKWEDAARVRKL 665 (809)
Q Consensus 625 A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~ 665 (809)
|+..++.. .-.+-.+..+..++++|...|++++|...|+.
T Consensus 104 Al~~L~~~-~~~~~~~~~~~~~Gdi~~~~g~~~~A~~~y~~ 143 (145)
T PF09976_consen 104 ALATLQQI-PDEAFKALAAELLGDIYLAQGDYDEARAAYQK 143 (145)
T ss_pred HHHHHHhc-cCcchHHHHHHHHHHHHHHCCCHHHHHHHHHH
Confidence 66666442 22233444566667777777777777766654
No 143
>KOG3060 consensus Uncharacterized conserved protein [Function unknown]
Probab=97.74 E-value=0.0016 Score=61.70 Aligned_cols=182 Identities=17% Similarity=0.216 Sum_probs=133.5
Q ss_pred cCCHHHHHHHHHhcCC--------CCe-eechHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHH-HHHHHccCCH
Q 003584 485 CGCINDANRVFDSMHT--------RDV-ITWTALIMGCAQNGKGKEALQFYDQMLARGTKPDYITFVGL-LFACSHAGLA 554 (809)
Q Consensus 485 ~g~~~~A~~~~~~~~~--------~~~-~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~pd~~t~~~l-l~a~~~~g~~ 554 (809)
..+.++..+++.++.. ++. ..|..++-+....|+.+.|...++++... + |.+.-...+ ..-+...|.+
T Consensus 25 ~rnseevv~l~~~~~~~~k~~~~g~e~w~l~EqV~IAAld~~~~~lAq~C~~~L~~~-f-p~S~RV~~lkam~lEa~~~~ 102 (289)
T KOG3060|consen 25 VRNSEEVVQLGSEVLNYSKSGALGDEIWTLYEQVFIAALDTGRDDLAQKCINQLRDR-F-PGSKRVGKLKAMLLEATGNY 102 (289)
T ss_pred ccCHHHHHHHHHHHHHHhhhcccCchHHHHHHHHHHHHHHhcchHHHHHHHHHHHHh-C-CCChhHHHHHHHHHHHhhch
Confidence 4678888888887751 122 23444555666788999999999998876 3 555432222 2224567899
Q ss_pred HHHHHHHHHhHHhhCCCCChHHHHHHHHHHhhcCCHHHHHHHHHhCcC--CCCHHHHHHHHHHHHhcCChhHHHHHHHHH
Q 003584 555 ENARWYFESMDKVYGIKPGPDHYACMIDLLGRSGKLIEAKALLDQMVG--EPDATVWKALLSACRVHGDLELGERAANNL 632 (809)
Q Consensus 555 ~~a~~~~~~m~~~~~~~p~~~~~~~li~~~~~~g~~~eA~~~~~~m~~--~p~~~~~~~ll~a~~~~g~~~~A~~~~~~~ 632 (809)
++|.++++++.++ -+-|..+|---+.++-..|+--+|++-+..... ..|...|.-|...|...|+++.|.-.++++
T Consensus 103 ~~A~e~y~~lL~d--dpt~~v~~KRKlAilka~GK~l~aIk~ln~YL~~F~~D~EAW~eLaeiY~~~~~f~kA~fClEE~ 180 (289)
T KOG3060|consen 103 KEAIEYYESLLED--DPTDTVIRKRKLAILKAQGKNLEAIKELNEYLDKFMNDQEAWHELAEIYLSEGDFEKAAFCLEEL 180 (289)
T ss_pred hhHHHHHHHHhcc--CcchhHHHHHHHHHHHHcCCcHHHHHHHHHHHHHhcCcHHHHHHHHHHHHhHhHHHHHHHHHHHH
Confidence 9999999998864 233556676667777777877788877766654 368889999999999999999999999999
Q ss_pred hccCCCCCccHHhHhhhhhhcCC---hhHHHHHHHHHHhCC
Q 003584 633 FELEPMNAMPYVQLSNMYSTAGK---WEDAARVRKLMKSRG 670 (809)
Q Consensus 633 ~~~~p~~~~~~~~l~~~~~~~g~---~~~A~~~~~~m~~~~ 670 (809)
+-+.|-++-.+..++.++.-.|. .+-|.+++.+..+..
T Consensus 181 ll~~P~n~l~f~rlae~~Yt~gg~eN~~~arkyy~~alkl~ 221 (289)
T KOG3060|consen 181 LLIQPFNPLYFQRLAEVLYTQGGAENLELARKYYERALKLN 221 (289)
T ss_pred HHcCCCcHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHhC
Confidence 99999999999999998877664 446777777766543
No 144
>PF01535 PPR: PPR repeat; InterPro: IPR002885 This entry represents the PPR repeat. Pentatricopeptide repeat (PPR) proteins are characterised by tandem repeats of a degenerate 35 amino acid motif []. Most of PPR proteins have roles in mitochondria or plastid []. PPR repeats were discovered while screening Arabidopsis proteins for those predicted to be targeted to mitochondria or chloroplast [, ]. Some of these proteins have been shown to play a role in post-transcriptional processes within organelles and they are thought to be sequence-specific RNA-binding proteins [, , ]. Plant genomes have between one hundred to five hundred PPR genes per genome whereas non-plant genomes encode two to six PPR proteins. Although no PPR structures are yet known, the motif is predicted to fold into a helix-turn-helix structure similar to those found in the tetratricopeptide repeat (TPR) family (see PDOC50005 from PROSITEDOC) []. The plant PPR protein family has been divided in two subfamilies on the basis of their motif content and organisation [, ]. Examples of PPR repeat-containing proteins include PET309 P32522 from SWISSPROT, which may be involved in RNA stabilisation [], and crp1, which is involved in RNA processing []. The repeat is associated with a predicted plant protein O49549 from SWISSPROT that has a domain organisation similar to the human BRCA1 protein.
Probab=97.71 E-value=4.2e-05 Score=48.13 Aligned_cols=31 Identities=35% Similarity=0.695 Sum_probs=27.4
Q ss_pred ccHHHHHHHHhhCCChHHHHHHHHHHHHCCC
Q 003584 201 VAWTTMITGYSQNGYGFKAIECFRDMRVEGV 231 (809)
Q Consensus 201 ~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~ 231 (809)
++||+||++|++.|++++|.++|++|.+.|+
T Consensus 1 v~y~~li~~~~~~~~~~~a~~~~~~M~~~g~ 31 (31)
T PF01535_consen 1 VTYNSLISGYCKMGQFEEALEVFDEMRERGI 31 (31)
T ss_pred CcHHHHHHHHHccchHHHHHHHHHHHhHCcC
Confidence 4799999999999999999999999988764
No 145
>cd00189 TPR Tetratricopeptide repeat domain; typically contains 34 amino acids [WLF]-X(2)-[LIM]-[GAS]-X(2)-[YLF]-X(8)-[ASE]-X(3)-[FYL]-X(2)-[ASL]-X(4)-[PKE] is the consensus sequence; found in a variety of organisms including bacteria, cyanobacteria, yeast, fungi, plants, and humans in various subcellular locations; involved in a variety of functions including protein-protein interactions, but common features in the interaction partners have not been defined; involved in chaperone, cell-cycle, transciption, and protein transport complexes; the number of TPR motifs varies among proteins (1,3-11,13 15,16,19); 5-6 tandem repeats generate a right-handed helical structure with an amphipathic channel that is thought to accomodate an alpha-helix of a target protein; it has been proposed that TPR proteins preferably interact with WD-40 repeat proteins, but in many instances several TPR-proteins seem to aggregate to multi-protein complexes; examples of TPR-proteins include, Cdc16p, Cdc23p and C
Probab=97.71 E-value=0.00023 Score=58.78 Aligned_cols=93 Identities=24% Similarity=0.289 Sum_probs=73.9
Q ss_pred HHHHHHHHhhcCCHHHHHHHHHhCcC-CC-CHHHHHHHHHHHHhcCChhHHHHHHHHHhccCCCCCccHHhHhhhhhhcC
Q 003584 577 YACMIDLLGRSGKLIEAKALLDQMVG-EP-DATVWKALLSACRVHGDLELGERAANNLFELEPMNAMPYVQLSNMYSTAG 654 (809)
Q Consensus 577 ~~~li~~~~~~g~~~eA~~~~~~m~~-~p-~~~~~~~ll~a~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g 654 (809)
+..+...+.+.|++++|...++++.. .| +...|..+...+...|+.+.|...+++.+...|.+...+..++.++...|
T Consensus 3 ~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 82 (100)
T cd00189 3 LLNLGNLYYKLGDYDEALEYYEKALELDPDNADAYYNLAAAYYKLGKYEEALEDYEKALELDPDNAKAYYNLGLAYYKLG 82 (100)
T ss_pred HHHHHHHHHHHhcHHHHHHHHHHHHhcCCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCcchhHHHHHHHHHHHHH
Confidence 44566677778888888888887654 23 34577778888888899999999999988888888888888888999999
Q ss_pred ChhHHHHHHHHHHhC
Q 003584 655 KWEDAARVRKLMKSR 669 (809)
Q Consensus 655 ~~~~A~~~~~~m~~~ 669 (809)
++++|...++...+.
T Consensus 83 ~~~~a~~~~~~~~~~ 97 (100)
T cd00189 83 KYEEALEAYEKALEL 97 (100)
T ss_pred hHHHHHHHHHHHHcc
Confidence 999998888776543
No 146
>PF09295 ChAPs: ChAPs (Chs5p-Arf1p-binding proteins); InterPro: IPR015374 ChAPs (Chs5p-Arf1p-binding proteins) are required for the export of specialised cargo from the Golgi. They physically interact with Chs3, Chs5 and the small GTPase Arf1, and they also form interactions with each other [].
Probab=97.69 E-value=0.00094 Score=70.13 Aligned_cols=122 Identities=13% Similarity=0.050 Sum_probs=90.1
Q ss_pred hHHHHHHHhcCCHHHHHHHHHhcCCCCeeechHHHHHHHhcCChHHHHHHHHHHHHCCCCC-CHHHHHHHHHHHHccCCH
Q 003584 476 NSLVLVYAKCGCINDANRVFDSMHTRDVITWTALIMGCAQNGKGKEALQFYDQMLARGTKP-DYITFVGLLFACSHAGLA 554 (809)
Q Consensus 476 ~~li~~y~k~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p-d~~t~~~ll~a~~~~g~~ 554 (809)
.+|+..+...++++.|..+|+++.+.++..+-.++..+...++-.+|++++++.+.. .| |...+..-...|.+.++.
T Consensus 173 ~~Ll~~l~~t~~~~~ai~lle~L~~~~pev~~~LA~v~l~~~~E~~AI~ll~~aL~~--~p~d~~LL~~Qa~fLl~k~~~ 250 (395)
T PF09295_consen 173 DTLLKYLSLTQRYDEAIELLEKLRERDPEVAVLLARVYLLMNEEVEAIRLLNEALKE--NPQDSELLNLQAEFLLSKKKY 250 (395)
T ss_pred HHHHHHHhhcccHHHHHHHHHHHHhcCCcHHHHHHHHHHhcCcHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHhcCCH
Confidence 445566666788888888888888766666666777777788888888888888864 34 444455555567788888
Q ss_pred HHHHHHHHHhHHhhCCCCCh-HHHHHHHHHHhhcCCHHHHHHHHHhCcC
Q 003584 555 ENARWYFESMDKVYGIKPGP-DHYACMIDLLGRSGKLIEAKALLDQMVG 602 (809)
Q Consensus 555 ~~a~~~~~~m~~~~~~~p~~-~~~~~li~~~~~~g~~~eA~~~~~~m~~ 602 (809)
+.|.++.+.+. ...|+. .+|..|+..|.+.|++++|+..++.+|.
T Consensus 251 ~lAL~iAk~av---~lsP~~f~~W~~La~~Yi~~~d~e~ALlaLNs~Pm 296 (395)
T PF09295_consen 251 ELALEIAKKAV---ELSPSEFETWYQLAECYIQLGDFENALLALNSCPM 296 (395)
T ss_pred HHHHHHHHHHH---HhCchhHHHHHHHHHHHHhcCCHHHHHHHHhcCcC
Confidence 88888888776 445544 5788888888888888888888888874
No 147
>PF13414 TPR_11: TPR repeat; PDB: 2HO1_B 2FI7_B 2DBA_A 3Q4A_B 2C2L_D 3Q47_B 3Q49_B 2PL2_B 3IEG_B 2FBN_A ....
Probab=97.68 E-value=6.9e-05 Score=57.96 Aligned_cols=65 Identities=26% Similarity=0.309 Sum_probs=59.0
Q ss_pred CHHHHHHHHHHHHhcCChhHHHHHHHHHhccCCCCCccHHhHhhhhhhcC-ChhHHHHHHHHHHhC
Q 003584 605 DATVWKALLSACRVHGDLELGERAANNLFELEPMNAMPYVQLSNMYSTAG-KWEDAARVRKLMKSR 669 (809)
Q Consensus 605 ~~~~~~~ll~a~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g-~~~~A~~~~~~m~~~ 669 (809)
++.+|..+...+...|++++|+..|+++++++|+++.+|..++.+|...| ++++|.+.+++..+.
T Consensus 2 ~a~~~~~~g~~~~~~~~~~~A~~~~~~ai~~~p~~~~~~~~~g~~~~~~~~~~~~A~~~~~~al~l 67 (69)
T PF13414_consen 2 NAEAWYNLGQIYFQQGDYEEAIEYFEKAIELDPNNAEAYYNLGLAYMKLGKDYEEAIEDFEKALKL 67 (69)
T ss_dssp SHHHHHHHHHHHHHTTHHHHHHHHHHHHHHHSTTHHHHHHHHHHHHHHTTTHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHhCccHHHHHHHHHHHHHc
Confidence 56789999999999999999999999999999999999999999999999 799999999887653
No 148
>PF09976 TPR_21: Tetratricopeptide repeat; InterPro: IPR018704 This domain, found in various hypothetical prokaryotic proteins, has no known function.
Probab=97.66 E-value=0.0019 Score=58.55 Aligned_cols=121 Identities=20% Similarity=0.124 Sum_probs=81.3
Q ss_pred HHHHHHhcCChHHHHHHHHHHHHCCCCCCH----HHHHHHHHHHHccCCHHHHHHHHHHhHHhhCCCCCh--HHHHHHHH
Q 003584 509 LIMGCAQNGKGKEALQFYDQMLARGTKPDY----ITFVGLLFACSHAGLAENARWYFESMDKVYGIKPGP--DHYACMID 582 (809)
Q Consensus 509 li~~~~~~g~~~~A~~l~~~m~~~g~~pd~----~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~~--~~~~~li~ 582 (809)
++..+ ..++...+...++++... .|+. .....+...+...|++++|...|+..... .-.|.. .....|..
T Consensus 18 ~~~~~-~~~~~~~~~~~~~~l~~~--~~~s~ya~~A~l~lA~~~~~~g~~~~A~~~l~~~~~~-~~d~~l~~~a~l~LA~ 93 (145)
T PF09976_consen 18 ALQAL-QAGDPAKAEAAAEQLAKD--YPSSPYAALAALQLAKAAYEQGDYDEAKAALEKALAN-APDPELKPLARLRLAR 93 (145)
T ss_pred HHHHH-HCCCHHHHHHHHHHHHHH--CCCChHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHhh-CCCHHHHHHHHHHHHH
Confidence 33443 467777787778888775 2333 23334456677788888888888887764 322222 23345677
Q ss_pred HHhhcCCHHHHHHHHHhCcCC-CCHHHHHHHHHHHHhcCChhHHHHHHHHHh
Q 003584 583 LLGRSGKLIEAKALLDQMVGE-PDATVWKALLSACRVHGDLELGERAANNLF 633 (809)
Q Consensus 583 ~~~~~g~~~eA~~~~~~m~~~-p~~~~~~~ll~a~~~~g~~~~A~~~~~~~~ 633 (809)
++...|++++|+..++..... ..+..+..++..+...|+.++|...|++++
T Consensus 94 ~~~~~~~~d~Al~~L~~~~~~~~~~~~~~~~Gdi~~~~g~~~~A~~~y~~Al 145 (145)
T PF09976_consen 94 ILLQQGQYDEALATLQQIPDEAFKALAAELLGDIYLAQGDYDEARAAYQKAL 145 (145)
T ss_pred HHHHcCCHHHHHHHHHhccCcchHHHHHHHHHHHHHHCCCHHHHHHHHHHhC
Confidence 788888888888888776543 344567777788888888888888887653
No 149
>PLN03088 SGT1, suppressor of G2 allele of SKP1; Provisional
Probab=97.66 E-value=0.00042 Score=73.10 Aligned_cols=86 Identities=19% Similarity=0.181 Sum_probs=49.7
Q ss_pred HhhcCCHHHHHHHHHhCcC-CC-CHHHHHHHHHHHHhcCChhHHHHHHHHHhccCCCCCccHHhHhhhhhhcCChhHHHH
Q 003584 584 LGRSGKLIEAKALLDQMVG-EP-DATVWKALLSACRVHGDLELGERAANNLFELEPMNAMPYVQLSNMYSTAGKWEDAAR 661 (809)
Q Consensus 584 ~~~~g~~~eA~~~~~~m~~-~p-~~~~~~~ll~a~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~ 661 (809)
+...|++++|++.|+++.. .| +...|..+..+|...|++++|+..++++++++|+++..|..++.+|...|++++|..
T Consensus 12 a~~~~~~~~Ai~~~~~Al~~~P~~~~a~~~~a~~~~~~g~~~eAl~~~~~Al~l~P~~~~a~~~lg~~~~~lg~~~eA~~ 91 (356)
T PLN03088 12 AFVDDDFALAVDLYTQAIDLDPNNAELYADRAQANIKLGNFTEAVADANKAIELDPSLAKAYLRKGTACMKLEEYQTAKA 91 (356)
T ss_pred HHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcCCHHHHHHHHHHHHHhCCHHHHHH
Confidence 4445555556555555543 22 344555555666666666666666666666666666666666666666666666666
Q ss_pred HHHHHHhC
Q 003584 662 VRKLMKSR 669 (809)
Q Consensus 662 ~~~~m~~~ 669 (809)
.+++..+.
T Consensus 92 ~~~~al~l 99 (356)
T PLN03088 92 ALEKGASL 99 (356)
T ss_pred HHHHHHHh
Confidence 66555543
No 150
>PRK14720 transcript cleavage factor/unknown domain fusion protein; Provisional
Probab=97.65 E-value=0.0084 Score=69.10 Aligned_cols=149 Identities=11% Similarity=0.076 Sum_probs=100.4
Q ss_pred cccHHHHHHHhhcCCChHHHHHHHHHHHHhccCCchHHHHHHHHHHHhcCCHHHHHHHHhhcCCCCHhHHHHHHHHHHhc
Q 003584 336 DFTYPSVLNCFASNIDLNNAKSVHSLIVKTGFEGYKFVNNALIDMYAKQGNLDCAFMVFNLMQDKDVISWTSLITGCAYH 415 (809)
Q Consensus 336 ~~t~~~ll~~~~~~~~~~~a~~i~~~~~~~g~~~~~~~~~~li~~y~~~g~~~~A~~~f~~~~~~~~~~~~~li~~~~~~ 415 (809)
...+..+..+|.+.|+.+++..+++.+++.. +.|+.+.|-+...|+.. ++++|..++.+. +..|...
T Consensus 116 k~Al~~LA~~Ydk~g~~~ka~~~yer~L~~D-~~n~~aLNn~AY~~ae~-dL~KA~~m~~KA-----------V~~~i~~ 182 (906)
T PRK14720 116 KLALRTLAEAYAKLNENKKLKGVWERLVKAD-RDNPEIVKKLATSYEEE-DKEKAITYLKKA-----------IYRFIKK 182 (906)
T ss_pred hHHHHHHHHHHHHcCChHHHHHHHHHHHhcC-cccHHHHHHHHHHHHHh-hHHHHHHHHHHH-----------HHHHHhh
Confidence 3456667777778888888888888888777 67788888888888888 899998877654 3347777
Q ss_pred CCHHHHHHHHHHHhhcCCccCHhHHHHHHHHHhcccchhHHHHHHHHHHHh-CCCCChhHHhHHHHHHHhcCCHHHHHHH
Q 003584 416 GSYEEALKYFSDMRISGICPDHVVVSSILSACAELTVLEFGQQVHAVFLKS-GGCSSLSVDNSLVLVYAKCGCINDANRV 494 (809)
Q Consensus 416 g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~~~~~~a~~~~~~~~~~-g~~~~~~~~~~li~~y~k~g~~~~A~~~ 494 (809)
.++.++.+++.++... .|+.+.+- .++.+.+... |..--+.++-.|...|-+..+++++..+
T Consensus 183 kq~~~~~e~W~k~~~~--~~~d~d~f---------------~~i~~ki~~~~~~~~~~~~~~~l~~~y~~~~~~~~~i~i 245 (906)
T PRK14720 183 KQYVGIEEIWSKLVHY--NSDDFDFF---------------LRIERKVLGHREFTRLVGLLEDLYEPYKALEDWDEVIYI 245 (906)
T ss_pred hcchHHHHHHHHHHhc--CcccchHH---------------HHHHHHHHhhhccchhHHHHHHHHHHHhhhhhhhHHHHH
Confidence 7888888988888875 34433321 1122222221 3333344555566777888888888888
Q ss_pred HHhcCC---CCeeechHHHHHHH
Q 003584 495 FDSMHT---RDVITWTALIMGCA 514 (809)
Q Consensus 495 ~~~~~~---~~~~~~~~li~~~~ 514 (809)
|..+.+ .|.....-++..|.
T Consensus 246 LK~iL~~~~~n~~a~~~l~~~y~ 268 (906)
T PRK14720 246 LKKILEHDNKNNKAREELIRFYK 268 (906)
T ss_pred HHHHHhcCCcchhhHHHHHHHHH
Confidence 888763 34445555666665
No 151
>PF01535 PPR: PPR repeat; InterPro: IPR002885 This entry represents the PPR repeat. Pentatricopeptide repeat (PPR) proteins are characterised by tandem repeats of a degenerate 35 amino acid motif []. Most of PPR proteins have roles in mitochondria or plastid []. PPR repeats were discovered while screening Arabidopsis proteins for those predicted to be targeted to mitochondria or chloroplast [, ]. Some of these proteins have been shown to play a role in post-transcriptional processes within organelles and they are thought to be sequence-specific RNA-binding proteins [, , ]. Plant genomes have between one hundred to five hundred PPR genes per genome whereas non-plant genomes encode two to six PPR proteins. Although no PPR structures are yet known, the motif is predicted to fold into a helix-turn-helix structure similar to those found in the tetratricopeptide repeat (TPR) family (see PDOC50005 from PROSITEDOC) []. The plant PPR protein family has been divided in two subfamilies on the basis of their motif content and organisation [, ]. Examples of PPR repeat-containing proteins include PET309 P32522 from SWISSPROT, which may be involved in RNA stabilisation [], and crp1, which is involved in RNA processing []. The repeat is associated with a predicted plant protein O49549 from SWISSPROT that has a domain organisation similar to the human BRCA1 protein.
Probab=97.65 E-value=5.8e-05 Score=47.50 Aligned_cols=31 Identities=42% Similarity=0.592 Sum_probs=24.1
Q ss_pred chHHHHHHHHHcCCCchhHHHHHHHHHHcCC
Q 003584 99 FTWSSLIYGYSNYGLDIEAFELFWQMQLEGY 129 (809)
Q Consensus 99 ~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~ 129 (809)
++||+||++|++.|++++|.++|++|.+.|+
T Consensus 1 v~y~~li~~~~~~~~~~~a~~~~~~M~~~g~ 31 (31)
T PF01535_consen 1 VTYNSLISGYCKMGQFEEALEVFDEMRERGI 31 (31)
T ss_pred CcHHHHHHHHHccchHHHHHHHHHHHhHCcC
Confidence 4688888888888888888888888877663
No 152
>KOG0553 consensus TPR repeat-containing protein [General function prediction only]
Probab=97.60 E-value=0.0006 Score=66.37 Aligned_cols=98 Identities=16% Similarity=0.103 Sum_probs=72.5
Q ss_pred HHccCCHHHHHHHHHHhHHhhCCCCCh-HHHHHHHHHHhhcCCHHHHHHHHHhCcC-CCCHH-HHHHHHHHHHhcCChhH
Q 003584 548 CSHAGLAENARWYFESMDKVYGIKPGP-DHYACMIDLLGRSGKLIEAKALLDQMVG-EPDAT-VWKALLSACRVHGDLEL 624 (809)
Q Consensus 548 ~~~~g~~~~a~~~~~~m~~~~~~~p~~-~~~~~li~~~~~~g~~~eA~~~~~~m~~-~p~~~-~~~~ll~a~~~~g~~~~ 624 (809)
..+.+++++|+..|...+ .+.|+. .-|..=..+|.+.|..+.|.+-.+.... .|.-. +|..|..+|...|++++
T Consensus 91 ~m~~~~Y~eAv~kY~~AI---~l~P~nAVyycNRAAAy~~Lg~~~~AVkDce~Al~iDp~yskay~RLG~A~~~~gk~~~ 167 (304)
T KOG0553|consen 91 LMKNKDYQEAVDKYTEAI---ELDPTNAVYYCNRAAAYSKLGEYEDAVKDCESALSIDPHYSKAYGRLGLAYLALGKYEE 167 (304)
T ss_pred HHHhhhHHHHHHHHHHHH---hcCCCcchHHHHHHHHHHHhcchHHHHHHHHHHHhcChHHHHHHHHHHHHHHccCcHHH
Confidence 456677888888887776 456644 4444556778888888888877766653 45443 88999999999999999
Q ss_pred HHHHHHHHhccCCCCCccHHhHhh
Q 003584 625 GERAANNLFELEPMNAMPYVQLSN 648 (809)
Q Consensus 625 A~~~~~~~~~~~p~~~~~~~~l~~ 648 (809)
|++.|+++++++|++...-..|..
T Consensus 168 A~~aykKaLeldP~Ne~~K~nL~~ 191 (304)
T KOG0553|consen 168 AIEAYKKALELDPDNESYKSNLKI 191 (304)
T ss_pred HHHHHHhhhccCCCcHHHHHHHHH
Confidence 999999999999988755554433
No 153
>TIGR02795 tol_pal_ybgF tol-pal system protein YbgF. Members of this protein family are the product of one of seven genes regularly clustered in operons to encode the proteins of the tol-pal system, which is critical for maintaining the integrity of the bacterial outer membrane. The gene for this periplasmic protein has been designated orf2 and ybgF. All members of the seed alignment were from unique tol-pal gene regions from completed bacterial genomes. The architecture of this protein is a signal sequence, a low-complexity region usually rich in Asn and Gln, a well-conserved region with tandem repeats that resemble the tetratricopeptide (TPR) repeat, involved in protein-protein interaction.
Probab=97.57 E-value=0.00064 Score=59.21 Aligned_cols=92 Identities=15% Similarity=0.105 Sum_probs=48.4
Q ss_pred HHHHHHHhhcCCHHHHHHHHHhCcC-CCC----HHHHHHHHHHHHhcCChhHHHHHHHHHhccCCCC---CccHHhHhhh
Q 003584 578 ACMIDLLGRSGKLIEAKALLDQMVG-EPD----ATVWKALLSACRVHGDLELGERAANNLFELEPMN---AMPYVQLSNM 649 (809)
Q Consensus 578 ~~li~~~~~~g~~~eA~~~~~~m~~-~p~----~~~~~~ll~a~~~~g~~~~A~~~~~~~~~~~p~~---~~~~~~l~~~ 649 (809)
..++..+.+.|++++|.+.++++.. .|+ ...+..+..++...|+++.|...+++++...|++ +..+..++.+
T Consensus 6 ~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~~~~~~~~ 85 (119)
T TIGR02795 6 YDAALLVLKAGDYADAIQAFQAFLKKYPKSTYAPNAHYWLGEAYYAQGKYADAAKAFLAVVKKYPKSPKAPDALLKLGMS 85 (119)
T ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHHCCCccccHHHHHHHHHHHHhhccHHHHHHHHHHHHHHCCCCCcccHHHHHHHHH
Confidence 3344445555555555555555442 122 2244445555555566666666666665555543 2345555556
Q ss_pred hhhcCChhHHHHHHHHHHhC
Q 003584 650 YSTAGKWEDAARVRKLMKSR 669 (809)
Q Consensus 650 ~~~~g~~~~A~~~~~~m~~~ 669 (809)
|.+.|++++|.+.++.+.+.
T Consensus 86 ~~~~~~~~~A~~~~~~~~~~ 105 (119)
T TIGR02795 86 LQELGDKEKAKATLQQVIKR 105 (119)
T ss_pred HHHhCChHHHHHHHHHHHHH
Confidence 66666666666666555544
No 154
>KOG0553 consensus TPR repeat-containing protein [General function prediction only]
Probab=97.57 E-value=0.0003 Score=68.38 Aligned_cols=89 Identities=18% Similarity=0.206 Sum_probs=80.6
Q ss_pred HHHHhhcCCHHHHHHHHHhCcC--CCCHHHHHHHHHHHHhcCChhHHHHHHHHHhccCCCCCccHHhHhhhhhhcCChhH
Q 003584 581 IDLLGRSGKLIEAKALLDQMVG--EPDATVWKALLSACRVHGDLELGERAANNLFELEPMNAMPYVQLSNMYSTAGKWED 658 (809)
Q Consensus 581 i~~~~~~g~~~eA~~~~~~m~~--~p~~~~~~~ll~a~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~ 658 (809)
.+-+.+.+++++|+..|.+.+. +.|++.|..-..+|.+.|.++.|++-.+.++.++|....+|..|+.+|...|++++
T Consensus 88 GN~~m~~~~Y~eAv~kY~~AI~l~P~nAVyycNRAAAy~~Lg~~~~AVkDce~Al~iDp~yskay~RLG~A~~~~gk~~~ 167 (304)
T KOG0553|consen 88 GNKLMKNKDYQEAVDKYTEAIELDPTNAVYYCNRAAAYSKLGEYEDAVKDCESALSIDPHYSKAYGRLGLAYLALGKYEE 167 (304)
T ss_pred HHHHHHhhhHHHHHHHHHHHHhcCCCcchHHHHHHHHHHHhcchHHHHHHHHHHHhcChHHHHHHHHHHHHHHccCcHHH
Confidence 3456788999999999998875 45788899999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHhC
Q 003584 659 AARVRKLMKSR 669 (809)
Q Consensus 659 A~~~~~~m~~~ 669 (809)
|.+.|++..+.
T Consensus 168 A~~aykKaLel 178 (304)
T KOG0553|consen 168 AIEAYKKALEL 178 (304)
T ss_pred HHHHHHhhhcc
Confidence 99999887654
No 155
>PF12895 Apc3: Anaphase-promoting complex, cyclosome, subunit 3; PDB: 3KAE_D 3Q4A_B 2C2L_D 3Q47_B 3Q49_B 2XPI_A 3ULQ_A.
Probab=97.56 E-value=5.5e-05 Score=61.17 Aligned_cols=78 Identities=18% Similarity=0.262 Sum_probs=54.3
Q ss_pred cCCHHHHHHHHHhCcC-CC---CHHHHHHHHHHHHhcCChhHHHHHHHHHhccCCCCCccHHhHhhhhhhcCChhHHHHH
Q 003584 587 SGKLIEAKALLDQMVG-EP---DATVWKALLSACRVHGDLELGERAANNLFELEPMNAMPYVQLSNMYSTAGKWEDAARV 662 (809)
Q Consensus 587 ~g~~~eA~~~~~~m~~-~p---~~~~~~~ll~a~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~ 662 (809)
.|++++|+.+++++.. .| +...|-.+..++...|++++|..++++ .+.+|.++.....++.+|.+.|++++|.++
T Consensus 2 ~~~y~~Ai~~~~k~~~~~~~~~~~~~~~~la~~~~~~~~y~~A~~~~~~-~~~~~~~~~~~~l~a~~~~~l~~y~eAi~~ 80 (84)
T PF12895_consen 2 QGNYENAIKYYEKLLELDPTNPNSAYLYNLAQCYFQQGKYEEAIELLQK-LKLDPSNPDIHYLLARCLLKLGKYEEAIKA 80 (84)
T ss_dssp TT-HHHHHHHHHHHHHHHCGTHHHHHHHHHHHHHHHTTHHHHHHHHHHC-HTHHHCHHHHHHHHHHHHHHTT-HHHHHHH
T ss_pred CccHHHHHHHHHHHHHHCCCChhHHHHHHHHHHHHHCCCHHHHHHHHHH-hCCCCCCHHHHHHHHHHHHHhCCHHHHHHH
Confidence 4566777777766654 23 344566677788888888888888877 666676666777778888888888888887
Q ss_pred HHH
Q 003584 663 RKL 665 (809)
Q Consensus 663 ~~~ 665 (809)
+++
T Consensus 81 l~~ 83 (84)
T PF12895_consen 81 LEK 83 (84)
T ss_dssp HHH
T ss_pred Hhc
Confidence 765
No 156
>TIGR02795 tol_pal_ybgF tol-pal system protein YbgF. Members of this protein family are the product of one of seven genes regularly clustered in operons to encode the proteins of the tol-pal system, which is critical for maintaining the integrity of the bacterial outer membrane. The gene for this periplasmic protein has been designated orf2 and ybgF. All members of the seed alignment were from unique tol-pal gene regions from completed bacterial genomes. The architecture of this protein is a signal sequence, a low-complexity region usually rich in Asn and Gln, a well-conserved region with tandem repeats that resemble the tetratricopeptide (TPR) repeat, involved in protein-protein interaction.
Probab=97.55 E-value=0.0013 Score=57.30 Aligned_cols=104 Identities=16% Similarity=0.139 Sum_probs=68.2
Q ss_pred HHHHHHHHHccCCHHHHHHHHHHhHHhhCCCC-ChHHHHHHHHHHhhcCCHHHHHHHHHhCcC-CCC----HHHHHHHHH
Q 003584 541 FVGLLFACSHAGLAENARWYFESMDKVYGIKP-GPDHYACMIDLLGRSGKLIEAKALLDQMVG-EPD----ATVWKALLS 614 (809)
Q Consensus 541 ~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p-~~~~~~~li~~~~~~g~~~eA~~~~~~m~~-~p~----~~~~~~ll~ 614 (809)
+..+...+...|++++|.+.|+.+.+.+.-.| ....+..+..++.+.|++++|.+.++.+.. .|+ ..++..+..
T Consensus 5 ~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~~~~~~~ 84 (119)
T TIGR02795 5 YYDAALLVLKAGDYADAIQAFQAFLKKYPKSTYAPNAHYWLGEAYYAQGKYADAAKAFLAVVKKYPKSPKAPDALLKLGM 84 (119)
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHHCCCccccHHHHHHHHHHHHhhccHHHHHHHHHHHHHHCCCCCcccHHHHHHHH
Confidence 34445555666666666666666654321111 123455567777777777777777776653 233 346777788
Q ss_pred HHHhcCChhHHHHHHHHHhccCCCCCccHH
Q 003584 615 ACRVHGDLELGERAANNLFELEPMNAMPYV 644 (809)
Q Consensus 615 a~~~~g~~~~A~~~~~~~~~~~p~~~~~~~ 644 (809)
++...|+.+.|...++++++..|+++....
T Consensus 85 ~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~ 114 (119)
T TIGR02795 85 SLQELGDKEKAKATLQQVIKRYPGSSAAKL 114 (119)
T ss_pred HHHHhCChHHHHHHHHHHHHHCcCChhHHH
Confidence 888888899999999988888887765443
No 157
>PRK10153 DNA-binding transcriptional activator CadC; Provisional
Probab=97.55 E-value=0.0018 Score=71.39 Aligned_cols=62 Identities=23% Similarity=0.261 Sum_probs=33.2
Q ss_pred HHHHHHHHHHHhcCChhHHHHHHHHHhccCCCCCccHHhHhhhhhhcCChhHHHHHHHHHHhC
Q 003584 607 TVWKALLSACRVHGDLELGERAANNLFELEPMNAMPYVQLSNMYSTAGKWEDAARVRKLMKSR 669 (809)
Q Consensus 607 ~~~~~ll~a~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~ 669 (809)
.+|..+.-.....|++++|...++++++++| +...|..++.+|...|+.++|...+++....
T Consensus 421 ~~~~ala~~~~~~g~~~~A~~~l~rAl~L~p-s~~a~~~lG~~~~~~G~~~eA~~~~~~A~~L 482 (517)
T PRK10153 421 RIYEILAVQALVKGKTDEAYQAINKAIDLEM-SWLNYVLLGKVYELKGDNRLAADAYSTAFNL 482 (517)
T ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHHcCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHhc
Confidence 3444444444445555555555555555555 3445555555555555555555555555443
No 158
>PF04840 Vps16_C: Vps16, C-terminal region; InterPro: IPR006925 This protein forms part of the Class C vacuolar protein sorting (Vps) complex. Vps16 is essential for vacuolar protein sorting, which is essential for viability in plants, but not yeast []. The Class C Vps complex is required for SNARE-mediated membrane fusion at the lysosome-like yeast vacuole. It is thought to play essential roles in membrane docking and fusion at the Golgi-to-endosome and endosome-to-vacuole stages of transport []. The role of VPS16 in this complex is not known.; GO: 0006886 intracellular protein transport, 0005737 cytoplasm
Probab=97.54 E-value=0.13 Score=52.93 Aligned_cols=120 Identities=19% Similarity=0.225 Sum_probs=86.8
Q ss_pred HHHHHHHhcCCHHHHHHHHHhcCCCCeeechHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCCHHH
Q 003584 477 SLVLVYAKCGCINDANRVFDSMHTRDVITWTALIMGCAQNGKGKEALQFYDQMLARGTKPDYITFVGLLFACSHAGLAEN 556 (809)
Q Consensus 477 ~li~~y~k~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~pd~~t~~~ll~a~~~~g~~~~ 556 (809)
..+.-+...|+...|.++-.+..-||-.-|-..+.+|+..|++++-.++... +-.++-|..++.+|...|...+
T Consensus 182 ~Ti~~li~~~~~k~A~kl~k~Fkv~dkrfw~lki~aLa~~~~w~eL~~fa~s------kKsPIGyepFv~~~~~~~~~~e 255 (319)
T PF04840_consen 182 DTIRKLIEMGQEKQAEKLKKEFKVPDKRFWWLKIKALAENKDWDELEKFAKS------KKSPIGYEPFVEACLKYGNKKE 255 (319)
T ss_pred HHHHHHHHCCCHHHHHHHHHHcCCcHHHHHHHHHHHHHhcCCHHHHHHHHhC------CCCCCChHHHHHHHHHCCCHHH
Confidence 3355556778888899888888888888899999999999999877665432 2234788888899999999999
Q ss_pred HHHHHHHhHHhhCCCCChHHHHHHHHHHhhcCCHHHHHHHHHhCcCCCCHHHHHHHHHHH
Q 003584 557 ARWYFESMDKVYGIKPGPDHYACMIDLLGRSGKLIEAKALLDQMVGEPDATVWKALLSAC 616 (809)
Q Consensus 557 a~~~~~~m~~~~~~~p~~~~~~~li~~~~~~g~~~eA~~~~~~m~~~p~~~~~~~ll~a~ 616 (809)
|..+...+. +..-+.+|.++|.+.+|.+.--+. .|...+..+..-|
T Consensus 256 A~~yI~k~~-----------~~~rv~~y~~~~~~~~A~~~A~~~---kd~~~L~~i~~~~ 301 (319)
T PF04840_consen 256 ASKYIPKIP-----------DEERVEMYLKCGDYKEAAQEAFKE---KDIDLLKQILKRC 301 (319)
T ss_pred HHHHHHhCC-----------hHHHHHHHHHCCCHHHHHHHHHHc---CCHHHHHHHHHHC
Confidence 888876532 244577888899998888775543 3555444444433
No 159
>PF13432 TPR_16: Tetratricopeptide repeat; PDB: 3CVP_A 3CVL_A 3CVQ_A 3CV0_A 2GW1_B 3CVN_A 3QKY_A 2PL2_B.
Probab=97.47 E-value=0.00023 Score=54.14 Aligned_cols=58 Identities=17% Similarity=0.225 Sum_probs=42.4
Q ss_pred HHHHHHhcCChhHHHHHHHHHhccCCCCCccHHhHhhhhhhcCChhHHHHHHHHHHhC
Q 003584 612 LLSACRVHGDLELGERAANNLFELEPMNAMPYVQLSNMYSTAGKWEDAARVRKLMKSR 669 (809)
Q Consensus 612 ll~a~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~ 669 (809)
+...+...|++++|+..++++++.+|+++..+..++.++...|++++|..+++++.+.
T Consensus 3 ~a~~~~~~g~~~~A~~~~~~~l~~~P~~~~a~~~lg~~~~~~g~~~~A~~~~~~a~~~ 60 (65)
T PF13432_consen 3 LARALYQQGDYDEAIAAFEQALKQDPDNPEAWYLLGRILYQQGRYDEALAYYERALEL 60 (65)
T ss_dssp HHHHHHHCTHHHHHHHHHHHHHCCSTTHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHH
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Confidence 4456677777777777777777777777777777777777777777777777776544
No 160
>PRK15331 chaperone protein SicA; Provisional
Probab=97.46 E-value=0.0045 Score=55.41 Aligned_cols=89 Identities=13% Similarity=0.063 Sum_probs=78.4
Q ss_pred HHHHHhhcCCHHHHHHHHHhCcC--CCCHHHHHHHHHHHHhcCChhHHHHHHHHHhccCCCCCccHHhHhhhhhhcCChh
Q 003584 580 MIDLLGRSGKLIEAKALLDQMVG--EPDATVWKALLSACRVHGDLELGERAANNLFELEPMNAMPYVQLSNMYSTAGKWE 657 (809)
Q Consensus 580 li~~~~~~g~~~eA~~~~~~m~~--~p~~~~~~~ll~a~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~ 657 (809)
..--+-..|++++|..+|+-... .-+..-|..|...|...++++.|+..|..+..++++|+.++...+.+|...|+.+
T Consensus 43 ~Ay~~y~~Gk~~eA~~~F~~L~~~d~~n~~Y~~GLaa~~Q~~k~y~~Ai~~Y~~A~~l~~~dp~p~f~agqC~l~l~~~~ 122 (165)
T PRK15331 43 HAYEFYNQGRLDEAETFFRFLCIYDFYNPDYTMGLAAVCQLKKQFQKACDLYAVAFTLLKNDYRPVFFTGQCQLLMRKAA 122 (165)
T ss_pred HHHHHHHCCCHHHHHHHHHHHHHhCcCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccCCCCccchHHHHHHHhCCHH
Confidence 34445678999999999986653 3466689999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHh
Q 003584 658 DAARVRKLMKS 668 (809)
Q Consensus 658 ~A~~~~~~m~~ 668 (809)
.|...|+...+
T Consensus 123 ~A~~~f~~a~~ 133 (165)
T PRK15331 123 KARQCFELVNE 133 (165)
T ss_pred HHHHHHHHHHh
Confidence 99999998775
No 161
>KOG2280 consensus Vacuolar assembly/sorting protein VPS16 [Intracellular trafficking, secretion, and vesicular transport]
Probab=97.43 E-value=0.3 Score=53.89 Aligned_cols=339 Identities=15% Similarity=0.092 Sum_probs=176.3
Q ss_pred HCCCCCCcchHHH-----HHHHHhccCChHHHHHHHHHHHHhCCCCchhHHHHHHHHHHhCCC---hHHHHHHHhccCC-
Q 003584 228 VEGVESNQFTFPS-----ILTACAAVSARDFGAQVHGCILSSGFEANVYVQSALIDMYAKCGD---LDSARRLLEYSEI- 298 (809)
Q Consensus 228 ~~g~~p~~~t~~~-----ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~Li~~y~~~g~---~~~A~~~f~~~~~- 298 (809)
.-|++.+..-|.. +++-+...+.+..|.++-..+-..-... ..++.....-+.+..+ -+-+..+-+++..
T Consensus 425 ~~gIplT~~qy~~l~~~~vi~Rl~~r~~Y~vaIQva~~l~~p~~~~-~~Vl~~Wa~~kI~~~d~~d~~vld~I~~kls~~ 503 (829)
T KOG2280|consen 425 RIGIPLTHEQYRHLSEEVVIDRLVDRHLYSVAIQVAKLLNLPESQG-DRVLLEWARRKIKQSDKMDEEVLDKIDEKLSAK 503 (829)
T ss_pred ccCccccHHHHhhhchhhhhHHHHhcchhHHHHHHHHHhCCccccc-cHHHHHHHHHHHhccCccchHHHHHHHHHhccc
Confidence 4566666555543 4666667778888888766653222111 5677777777777633 2333444445554
Q ss_pred -CCeeeHHHHHHHHHhcCChhHHHHHHHHHHHCCC----CCCcccHHHHHHHhhcCCChHHHHHHHHHHHHhccCCchHH
Q 003584 299 -DNEVSWNSMIVGFARQGFHKEALSLFKKMHARDI----KIDDFTYPSVLNCFASNIDLNNAKSVHSLIVKTGFEGYKFV 373 (809)
Q Consensus 299 -~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~----~p~~~t~~~ll~~~~~~~~~~~a~~i~~~~~~~g~~~~~~~ 373 (809)
...++|..+..--.+.|+.+.|..+++.=...+. -.+..-+...+.-+...|+.+....++-.+...-..
T Consensus 504 ~~~~iSy~~iA~~Ay~~GR~~LA~kLle~E~~~~~qV~lLL~m~~~~~AL~kaies~d~~Li~~Vllhlk~~~~~----- 578 (829)
T KOG2280|consen 504 LTPGISYAAIARRAYQEGRFELARKLLELEPRSGEQVPLLLKMKDSSLALKKAIESGDTDLIIQVLLHLKNKLNR----- 578 (829)
T ss_pred CCCceeHHHHHHHHHhcCcHHHHHHHHhcCCCccchhHHHhccchHHHHHHHHHhcCCchhHHHHHHHHHHHHHH-----
Confidence 5678899998888899999999888764222111 112222334444555555555555554444332100
Q ss_pred HHHHHHHHHhcCCHHHHHHHHhhcCC-CCHhHHHHHHHHHHhcCCHHHHHHHH--HHHh----hcCCccCHhHHHHHHHH
Q 003584 374 NNALIDMYAKQGNLDCAFMVFNLMQD-KDVISWTSLITGCAYHGSYEEALKYF--SDMR----ISGICPDHVVVSSILSA 446 (809)
Q Consensus 374 ~~~li~~y~~~g~~~~A~~~f~~~~~-~~~~~~~~li~~~~~~g~~~~A~~~~--~~m~----~~g~~p~~~t~~~ll~a 446 (809)
-+...-..+.-.|..+|..... .|..+ +-+.|-+..+. +++.-| +... ..|..|+. ...-.+
T Consensus 579 ----s~l~~~l~~~p~a~~lY~~~~r~~~~~~---l~d~y~q~dn~-~~~a~~~~q~~~~~~~~~~r~~~l---k~~a~~ 647 (829)
T KOG2280|consen 579 ----SSLFMTLRNQPLALSLYRQFMRHQDRAT---LYDFYNQDDNH-QALASFHLQASYAAETIEGRIPAL---KTAANA 647 (829)
T ss_pred ----HHHHHHHHhchhhhHHHHHHHHhhchhh---hhhhhhcccch-hhhhhhhhhhhhhhhhhcccchhH---HHHHHH
Confidence 0001111122233333333222 11111 11112222222 222111 1100 12223332 233334
Q ss_pred HhcccchhHHHHHHH----------HHH-HhCCCCChhHHhHHHHHHHhcCCHHHHHHHHHhcCCCCeeechHHHHHHHh
Q 003584 447 CAELTVLEFGQQVHA----------VFL-KSGGCSSLSVDNSLVLVYAKCGCINDANRVFDSMHTRDVITWTALIMGCAQ 515 (809)
Q Consensus 447 ~~~~~~~~~a~~~~~----------~~~-~~g~~~~~~~~~~li~~y~k~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~ 515 (809)
|++......+.+..+ .+. +.|......+.+--+.-+..-|+..+|.++-.+..-||-..|---+.+++.
T Consensus 648 ~a~sk~~s~e~ka~ed~~kLl~lQ~~Le~q~~~~f~dlSl~dTv~~li~~g~~k~a~ql~~~FkipdKr~~wLk~~aLa~ 727 (829)
T KOG2280|consen 648 FAKSKEKSFEAKALEDQMKLLKLQRTLEDQFGGSFVDLSLHDTVTTLILIGQNKRAEQLKSDFKIPDKRLWWLKLTALAD 727 (829)
T ss_pred HhhhhhhhhHHHHHHHHHHHHHHHHHHHHHhccccccCcHHHHHHHHHHccchHHHHHHHHhcCCcchhhHHHHHHHHHh
Confidence 444433221111111 111 123222222233334445567888888888888887887777777888888
Q ss_pred cCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHhHHhhCCCCChHHHHHHHHHHhhcCCHHHHHH
Q 003584 516 NGKGKEALQFYDQMLARGTKPDYITFVGLLFACSHAGLAENARWYFESMDKVYGIKPGPDHYACMIDLLGRSGKLIEAKA 595 (809)
Q Consensus 516 ~g~~~~A~~l~~~m~~~g~~pd~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~~~~~~~li~~~~~~g~~~eA~~ 595 (809)
.+++++-+++-+.+. .++-|.....+|.+.|+.+||.+++.+.. +. .-.+.+|.+.|++.+|.+
T Consensus 728 ~~kweeLekfAkskk------sPIGy~PFVe~c~~~~n~~EA~KYiprv~---~l-------~ekv~ay~~~~~~~eAad 791 (829)
T KOG2280|consen 728 IKKWEELEKFAKSKK------SPIGYLPFVEACLKQGNKDEAKKYIPRVG---GL-------QEKVKAYLRVGDVKEAAD 791 (829)
T ss_pred hhhHHHHHHHHhccC------CCCCchhHHHHHHhcccHHHHhhhhhccC---Ch-------HHHHHHHHHhccHHHHHH
Confidence 888877666554432 25667777888888888888888875432 11 145777888888888877
Q ss_pred HHHh
Q 003584 596 LLDQ 599 (809)
Q Consensus 596 ~~~~ 599 (809)
+--+
T Consensus 792 ~A~~ 795 (829)
T KOG2280|consen 792 LAAE 795 (829)
T ss_pred HHHH
Confidence 6533
No 162
>PRK02603 photosystem I assembly protein Ycf3; Provisional
Probab=97.38 E-value=0.0037 Score=58.62 Aligned_cols=128 Identities=18% Similarity=0.274 Sum_probs=73.2
Q ss_pred eechHHHHHHHhcCChHHHHHHHHHHHHCCCCCC--HHHHHHHHHHHHccCCHHHHHHHHHHhHHhhCCCC-ChHHHHHH
Q 003584 504 ITWTALIMGCAQNGKGKEALQFYDQMLARGTKPD--YITFVGLLFACSHAGLAENARWYFESMDKVYGIKP-GPDHYACM 580 (809)
Q Consensus 504 ~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~pd--~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p-~~~~~~~l 580 (809)
..+..+...+...|++++|+..|++.......|+ ...+..+...+.+.|++++|...++...+. .| +...+..+
T Consensus 36 ~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~---~p~~~~~~~~l 112 (172)
T PRK02603 36 FVYYRDGMSAQADGEYAEALENYEEALKLEEDPNDRSYILYNMGIIYASNGEHDKALEYYHQALEL---NPKQPSALNNI 112 (172)
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHHhhccchHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh---CcccHHHHHHH
Confidence 3455566666677777777777777765432222 235556666666777777777776665532 23 23444455
Q ss_pred HHHHhhcCCHHHHHHHHHhCcCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHhccCCCCCccHHhHhhhhhhcCC
Q 003584 581 IDLLGRSGKLIEAKALLDQMVGEPDATVWKALLSACRVHGDLELGERAANNLFELEPMNAMPYVQLSNMYSTAGK 655 (809)
Q Consensus 581 i~~~~~~g~~~eA~~~~~~m~~~p~~~~~~~ll~a~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~ 655 (809)
..+|...|+...+..-++... ..++.|.+.++++++++|++ |..+...+...|+
T Consensus 113 g~~~~~~g~~~~a~~~~~~A~------------------~~~~~A~~~~~~a~~~~p~~---~~~~~~~~~~~~~ 166 (172)
T PRK02603 113 AVIYHKRGEKAEEAGDQDEAE------------------ALFDKAAEYWKQAIRLAPNN---YIEAQNWLKTTGR 166 (172)
T ss_pred HHHHHHcCChHhHhhCHHHHH------------------HHHHHHHHHHHHHHhhCchh---HHHHHHHHHhcCc
Confidence 555655555544443322211 12567788888888888876 4444444444443
No 163
>KOG3081 consensus Vesicle coat complex COPI, epsilon subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=97.38 E-value=0.014 Score=55.98 Aligned_cols=141 Identities=13% Similarity=0.068 Sum_probs=108.5
Q ss_pred HHHHHHHHCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHhHHhhCCCCChHHHHHHHHHHhhcCCHHHHHHHHHhCcCC
Q 003584 524 QFYDQMLARGTKPDYITFVGLLFACSHAGLAENARWYFESMDKVYGIKPGPDHYACMIDLLGRSGKLIEAKALLDQMVGE 603 (809)
Q Consensus 524 ~l~~~m~~~g~~pd~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~~~~~~~li~~~~~~g~~~eA~~~~~~m~~~ 603 (809)
++.+.+.......|.+....-...|.+.|++++|.+..... -+.+....=+..+.|..+++-|.+.+++|..-
T Consensus 94 ~l~E~~a~~~~~sn~i~~l~aa~i~~~~~~~deAl~~~~~~-------~~lE~~Al~VqI~lk~~r~d~A~~~lk~mq~i 166 (299)
T KOG3081|consen 94 SLYELVADSTDGSNLIDLLLAAIIYMHDGDFDEALKALHLG-------ENLEAAALNVQILLKMHRFDLAEKELKKMQQI 166 (299)
T ss_pred HHHHHHHhhccchhHHHHHHhhHHhhcCCChHHHHHHHhcc-------chHHHHHHHHHHHHHHHHHHHHHHHHHHHHcc
Confidence 34555555444444444444555699999999999987542 24555555677788999999999999999965
Q ss_pred CCHHHHHHHHHHHHhc----CChhHHHHHHHHHhccCCCCCccHHhHhhhhhhcCChhHHHHHHHHHHhCCC
Q 003584 604 PDATVWKALLSACRVH----GDLELGERAANNLFELEPMNAMPYVQLSNMYSTAGKWEDAARVRKLMKSRGI 671 (809)
Q Consensus 604 p~~~~~~~ll~a~~~~----g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~ 671 (809)
.+..+.+.|..++... +.+..|.-+|+++-+.-|+.+......+.++...|+|++|..+++...++..
T Consensus 167 ded~tLtQLA~awv~la~ggek~qdAfyifeE~s~k~~~T~~llnG~Av~~l~~~~~eeAe~lL~eaL~kd~ 238 (299)
T KOG3081|consen 167 DEDATLTQLAQAWVKLATGGEKIQDAFYIFEELSEKTPPTPLLLNGQAVCHLQLGRYEEAESLLEEALDKDA 238 (299)
T ss_pred chHHHHHHHHHHHHHHhccchhhhhHHHHHHHHhcccCCChHHHccHHHHHHHhcCHHHHHHHHHHHHhccC
Confidence 6666777777776432 3588899999999998887888999999999999999999999999987643
No 164
>PRK02603 photosystem I assembly protein Ycf3; Provisional
Probab=97.34 E-value=0.0016 Score=61.06 Aligned_cols=81 Identities=15% Similarity=0.137 Sum_probs=63.2
Q ss_pred HHHHHHHHHHhhcCCHHHHHHHHHhCcC-CCC----HHHHHHHHHHHHhcCChhHHHHHHHHHhccCCCCCccHHhHhhh
Q 003584 575 DHYACMIDLLGRSGKLIEAKALLDQMVG-EPD----ATVWKALLSACRVHGDLELGERAANNLFELEPMNAMPYVQLSNM 649 (809)
Q Consensus 575 ~~~~~li~~~~~~g~~~eA~~~~~~m~~-~p~----~~~~~~ll~a~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~ 649 (809)
..+..+...+.+.|++++|...|++... .|+ ...|..+...+...|+++.|+..++++++..|+++..+..++.+
T Consensus 36 ~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~ 115 (172)
T PRK02603 36 FVYYRDGMSAQADGEYAEALENYEEALKLEEDPNDRSYILYNMGIIYASNGEHDKALEYYHQALELNPKQPSALNNIAVI 115 (172)
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHHhhccchHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcccHHHHHHHHHH
Confidence 4456666677777777777777776653 122 35788888889999999999999999999999888888888888
Q ss_pred hhhcCC
Q 003584 650 YSTAGK 655 (809)
Q Consensus 650 ~~~~g~ 655 (809)
|...|+
T Consensus 116 ~~~~g~ 121 (172)
T PRK02603 116 YHKRGE 121 (172)
T ss_pred HHHcCC
Confidence 888776
No 165
>PLN03088 SGT1, suppressor of G2 allele of SKP1; Provisional
Probab=97.33 E-value=0.0022 Score=67.70 Aligned_cols=99 Identities=15% Similarity=0.087 Sum_probs=63.2
Q ss_pred HHccCCHHHHHHHHHHhHHhhCCCC-ChHHHHHHHHHHhhcCCHHHHHHHHHhCcC-CC-CHHHHHHHHHHHHhcCChhH
Q 003584 548 CSHAGLAENARWYFESMDKVYGIKP-GPDHYACMIDLLGRSGKLIEAKALLDQMVG-EP-DATVWKALLSACRVHGDLEL 624 (809)
Q Consensus 548 ~~~~g~~~~a~~~~~~m~~~~~~~p-~~~~~~~li~~~~~~g~~~eA~~~~~~m~~-~p-~~~~~~~ll~a~~~~g~~~~ 624 (809)
+...|++++|...|+.+.+ ..| +...|..+..+|.+.|++++|+..++++.. .| +...|..+..+|...|++++
T Consensus 12 a~~~~~~~~Ai~~~~~Al~---~~P~~~~a~~~~a~~~~~~g~~~eAl~~~~~Al~l~P~~~~a~~~lg~~~~~lg~~~e 88 (356)
T PLN03088 12 AFVDDDFALAVDLYTQAID---LDPNNAELYADRAQANIKLGNFTEAVADANKAIELDPSLAKAYLRKGTACMKLEEYQT 88 (356)
T ss_pred HHHcCCHHHHHHHHHHHHH---hCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcCCHHHHHHHHHHHHHhCCHHH
Confidence 3445556666666555543 222 334555566666666677777666666653 23 45577777777788888888
Q ss_pred HHHHHHHHhccCCCCCccHHhHhhh
Q 003584 625 GERAANNLFELEPMNAMPYVQLSNM 649 (809)
Q Consensus 625 A~~~~~~~~~~~p~~~~~~~~l~~~ 649 (809)
|+..++++++++|+++.....+..+
T Consensus 89 A~~~~~~al~l~P~~~~~~~~l~~~ 113 (356)
T PLN03088 89 AKAALEKGASLAPGDSRFTKLIKEC 113 (356)
T ss_pred HHHHHHHHHHhCCCCHHHHHHHHHH
Confidence 8888888888888777766665444
No 166
>PF13432 TPR_16: Tetratricopeptide repeat; PDB: 3CVP_A 3CVL_A 3CVQ_A 3CV0_A 2GW1_B 3CVN_A 3QKY_A 2PL2_B.
Probab=97.32 E-value=0.00058 Score=51.94 Aligned_cols=61 Identities=25% Similarity=0.324 Sum_probs=50.9
Q ss_pred HHHHHhhcCCHHHHHHHHHhCcC-CCC-HHHHHHHHHHHHhcCChhHHHHHHHHHhccCCCCC
Q 003584 580 MIDLLGRSGKLIEAKALLDQMVG-EPD-ATVWKALLSACRVHGDLELGERAANNLFELEPMNA 640 (809)
Q Consensus 580 li~~~~~~g~~~eA~~~~~~m~~-~p~-~~~~~~ll~a~~~~g~~~~A~~~~~~~~~~~p~~~ 640 (809)
+...+.+.|++++|.+.|++... .|+ ...|..+..++...|++++|...++++++.+|+++
T Consensus 3 ~a~~~~~~g~~~~A~~~~~~~l~~~P~~~~a~~~lg~~~~~~g~~~~A~~~~~~a~~~~P~~p 65 (65)
T PF13432_consen 3 LARALYQQGDYDEAIAAFEQALKQDPDNPEAWYLLGRILYQQGRYDEALAYYERALELDPDNP 65 (65)
T ss_dssp HHHHHHHCTHHHHHHHHHHHHHCCSTTHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHHSTT-H
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCcCCC
Confidence 45678889999999999998886 364 45899999999999999999999999999999874
No 167
>CHL00033 ycf3 photosystem I assembly protein Ycf3
Probab=97.31 E-value=0.0014 Score=61.19 Aligned_cols=93 Identities=13% Similarity=-0.017 Sum_probs=74.9
Q ss_pred hHHHHHHHHHHhhcCCHHHHHHHHHhCcC-CCC----HHHHHHHHHHHHhcCChhHHHHHHHHHhccCCCCCccHHhHhh
Q 003584 574 PDHYACMIDLLGRSGKLIEAKALLDQMVG-EPD----ATVWKALLSACRVHGDLELGERAANNLFELEPMNAMPYVQLSN 648 (809)
Q Consensus 574 ~~~~~~li~~~~~~g~~~eA~~~~~~m~~-~p~----~~~~~~ll~a~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~ 648 (809)
...|..++..+...|++++|...+++... .|+ ..+|..+...+...|+.++|+..++++++++|.....+..++.
T Consensus 35 a~~~~~~g~~~~~~g~~~~A~~~~~~al~l~~~~~~~~~~~~~lg~~~~~~g~~~eA~~~~~~Al~~~~~~~~~~~~la~ 114 (168)
T CHL00033 35 AFTYYRDGMSAQSEGEYAEALQNYYEAMRLEIDPYDRSYILYNIGLIHTSNGEHTKALEYYFQALERNPFLPQALNNMAV 114 (168)
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHhccccchhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcCcHHHHHHHHH
Confidence 34556667777788889999888887752 222 3488999999999999999999999999999999888888888
Q ss_pred hhh-------hcCChhHHHHHHHHH
Q 003584 649 MYS-------TAGKWEDAARVRKLM 666 (809)
Q Consensus 649 ~~~-------~~g~~~~A~~~~~~m 666 (809)
+|. ..|++++|...+++.
T Consensus 115 i~~~~~~~~~~~g~~~~A~~~~~~a 139 (168)
T CHL00033 115 ICHYRGEQAIEQGDSEIAEAWFDQA 139 (168)
T ss_pred HHHHhhHHHHHcccHHHHHHHHHHH
Confidence 888 888888776666554
No 168
>KOG0550 consensus Molecular chaperone (DnaJ superfamily) [Posttranslational modification, protein turnover, chaperones]
Probab=97.30 E-value=0.0029 Score=64.11 Aligned_cols=153 Identities=13% Similarity=0.038 Sum_probs=110.4
Q ss_pred HHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHH--HHHHccCCHHHHHHHHHHhHHhhCCCCChHH-------------
Q 003584 512 GCAQNGKGKEALQFYDQMLARGTKPDYITFVGLL--FACSHAGLAENARWYFESMDKVYGIKPGPDH------------- 576 (809)
Q Consensus 512 ~~~~~g~~~~A~~l~~~m~~~g~~pd~~t~~~ll--~a~~~~g~~~~a~~~~~~m~~~~~~~p~~~~------------- 576 (809)
.+...|++++|...--..++. .+.. .+..++ .++--.++.+.|...|++.. .+.|+...
T Consensus 178 cl~~~~~~~~a~~ea~~ilkl--d~~n-~~al~vrg~~~yy~~~~~ka~~hf~qal---~ldpdh~~sk~~~~~~k~le~ 251 (486)
T KOG0550|consen 178 CLAFLGDYDEAQSEAIDILKL--DATN-AEALYVRGLCLYYNDNADKAINHFQQAL---RLDPDHQKSKSASMMPKKLEV 251 (486)
T ss_pred hhhhcccchhHHHHHHHHHhc--ccch-hHHHHhcccccccccchHHHHHHHhhhh---ccChhhhhHHhHhhhHHHHHH
Confidence 355678888887766555543 2211 122222 23445667788888877654 44554321
Q ss_pred HHHHHHHHhhcCCHHHHHHHHHhCcC------CCCHHHHHHHHHHHHhcCChhHHHHHHHHHhccCCCCCccHHhHhhhh
Q 003584 577 YACMIDLLGRSGKLIEAKALLDQMVG------EPDATVWKALLSACRVHGDLELGERAANNLFELEPMNAMPYVQLSNMY 650 (809)
Q Consensus 577 ~~~li~~~~~~g~~~eA~~~~~~m~~------~p~~~~~~~ll~a~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~ 650 (809)
+.-=.+...+.|++.+|.+.+.+... +|++..|.....+..+.|+.++|+.-.+.+++++|.-..+|..-++++
T Consensus 252 ~k~~gN~~fk~G~y~~A~E~Yteal~idP~n~~~naklY~nra~v~~rLgrl~eaisdc~~Al~iD~syikall~ra~c~ 331 (486)
T KOG0550|consen 252 KKERGNDAFKNGNYRKAYECYTEALNIDPSNKKTNAKLYGNRALVNIRLGRLREAISDCNEALKIDSSYIKALLRRANCH 331 (486)
T ss_pred HHhhhhhHhhccchhHHHHHHHHhhcCCccccchhHHHHHHhHhhhcccCCchhhhhhhhhhhhcCHHHHHHHHHHHHHH
Confidence 11123446788999999999988774 255667878888889999999999999999999999999999999999
Q ss_pred hhcCChhHHHHHHHHHHhCC
Q 003584 651 STAGKWEDAARVRKLMKSRG 670 (809)
Q Consensus 651 ~~~g~~~~A~~~~~~m~~~~ 670 (809)
...++|++|.+-+++.....
T Consensus 332 l~le~~e~AV~d~~~a~q~~ 351 (486)
T KOG0550|consen 332 LALEKWEEAVEDYEKAMQLE 351 (486)
T ss_pred HHHHHHHHHHHHHHHHHhhc
Confidence 99999999999998876543
No 169
>cd00189 TPR Tetratricopeptide repeat domain; typically contains 34 amino acids [WLF]-X(2)-[LIM]-[GAS]-X(2)-[YLF]-X(8)-[ASE]-X(3)-[FYL]-X(2)-[ASL]-X(4)-[PKE] is the consensus sequence; found in a variety of organisms including bacteria, cyanobacteria, yeast, fungi, plants, and humans in various subcellular locations; involved in a variety of functions including protein-protein interactions, but common features in the interaction partners have not been defined; involved in chaperone, cell-cycle, transciption, and protein transport complexes; the number of TPR motifs varies among proteins (1,3-11,13 15,16,19); 5-6 tandem repeats generate a right-handed helical structure with an amphipathic channel that is thought to accomodate an alpha-helix of a target protein; it has been proposed that TPR proteins preferably interact with WD-40 repeat proteins, but in many instances several TPR-proteins seem to aggregate to multi-protein complexes; examples of TPR-proteins include, Cdc16p, Cdc23p and C
Probab=97.29 E-value=0.0026 Score=52.17 Aligned_cols=61 Identities=23% Similarity=0.211 Sum_probs=32.3
Q ss_pred HHHHHHHHhhcCCHHHHHHHHHhCcC--CCCHHHHHHHHHHHHhcCChhHHHHHHHHHhccCC
Q 003584 577 YACMIDLLGRSGKLIEAKALLDQMVG--EPDATVWKALLSACRVHGDLELGERAANNLFELEP 637 (809)
Q Consensus 577 ~~~li~~~~~~g~~~eA~~~~~~m~~--~p~~~~~~~ll~a~~~~g~~~~A~~~~~~~~~~~p 637 (809)
+..+...+...|++++|.+.+++... +.+..+|..+...+...|+.+.|...++++++..|
T Consensus 37 ~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~ 99 (100)
T cd00189 37 YYNLAAAYYKLGKYEEALEDYEKALELDPDNAKAYYNLGLAYYKLGKYEEALEAYEKALELDP 99 (100)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhCCCcchhHHHHHHHHHHHHHhHHHHHHHHHHHHccCC
Confidence 33344444444555555555544332 12234555666666666666666666666666555
No 170
>KOG2041 consensus WD40 repeat protein [General function prediction only]
Probab=97.29 E-value=0.22 Score=54.23 Aligned_cols=384 Identities=14% Similarity=0.098 Sum_probs=190.5
Q ss_pred hhHHHHHhhhCCCCCCcccHHHHHHHHhhCCChHHHHHHHHHHHH-CCCCCCcchHHHHH-------HHHhccCChHHHH
Q 003584 184 IFEAEYLFKMFPDGKNHVAWTTMITGYSQNGYGFKAIECFRDMRV-EGVESNQFTFPSIL-------TACAAVSARDFGA 255 (809)
Q Consensus 184 ~~~A~~~f~~~~~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~-~g~~p~~~t~~~ll-------~~~~~~~~~~~a~ 255 (809)
+++|.+..+.-|. +..|..+.....+.-.++-|...|-+... .|++.-.. +.++. ...+--|.+++|+
T Consensus 679 ledA~qfiEdnPH---prLWrllAe~Al~Kl~l~tAE~AFVrc~dY~Gik~vkr-l~~i~s~~~q~aei~~~~g~feeae 754 (1189)
T KOG2041|consen 679 LEDAIQFIEDNPH---PRLWRLLAEYALFKLALDTAEHAFVRCGDYAGIKLVKR-LRTIHSKEQQRAEISAFYGEFEEAE 754 (1189)
T ss_pred hHHHHHHHhcCCc---hHHHHHHHHHHHHHHhhhhHhhhhhhhccccchhHHHH-hhhhhhHHHHhHhHhhhhcchhHhh
Confidence 4555555544433 44566666555555555555555544322 12210000 00000 0111235666666
Q ss_pred HHHHHHHHhCCCCchhHHHHHHHHHHhCCChHHHHHHHhccCCCC-----eeeHHHHHHHHHhcCChhHHHHHHHHHHHC
Q 003584 256 QVHGCILSSGFEANVYVQSALIDMYAKCGDLDSARRLLEYSEIDN-----EVSWNSMIVGFARQGFHKEALSLFKKMHAR 330 (809)
Q Consensus 256 ~~~~~~~~~g~~~~~~~~~~Li~~y~~~g~~~~A~~~f~~~~~~~-----~~~~~~li~~~~~~g~~~~A~~~~~~m~~~ 330 (809)
+++-.+-++. .-|.++.+.|++-...++++.....+ ...|+.+...++....+++|.+.|..-...
T Consensus 755 k~yld~drrD---------LAielr~klgDwfrV~qL~r~g~~d~dD~~~e~A~r~ig~~fa~~~~We~A~~yY~~~~~~ 825 (1189)
T KOG2041|consen 755 KLYLDADRRD---------LAIELRKKLGDWFRVYQLIRNGGSDDDDEGKEDAFRNIGETFAEMMEWEEAAKYYSYCGDT 825 (1189)
T ss_pred hhhhccchhh---------hhHHHHHhhhhHHHHHHHHHccCCCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccch
Confidence 6665554432 23566667777777777766543221 245777777777777777777777654211
Q ss_pred CCCCCcccHHHHHHHhhcCCChHHHHHHHHHHHHhccCCchHHHHHHHHHHHhcCCHHHHHHHHhhcCCCCHhHHHHHHH
Q 003584 331 DIKIDDFTYPSVLNCFASNIDLNNAKSVHSLIVKTGFEGYKFVNNALIDMYAKQGNLDCAFMVFNLMQDKDVISWTSLIT 410 (809)
Q Consensus 331 g~~p~~~t~~~ll~~~~~~~~~~~a~~i~~~~~~~g~~~~~~~~~~li~~y~~~g~~~~A~~~f~~~~~~~~~~~~~li~ 410 (809)
...+.++.+...+++-+.+- ..++.+....-.+.+++.+.|.-++|.+.|-+...|.. .+.
T Consensus 826 ---------e~~~ecly~le~f~~LE~la-----~~Lpe~s~llp~~a~mf~svGMC~qAV~a~Lr~s~pka-----Av~ 886 (1189)
T KOG2041|consen 826 ---------ENQIECLYRLELFGELEVLA-----RTLPEDSELLPVMADMFTSVGMCDQAVEAYLRRSLPKA-----AVH 886 (1189)
T ss_pred ---------HhHHHHHHHHHhhhhHHHHH-----HhcCcccchHHHHHHHHHhhchHHHHHHHHHhccCcHH-----HHH
Confidence 12333444433333322222 22355666667788888888888888888777665532 345
Q ss_pred HHHhcCCHHHHHHHHHHHhhcCCccCHhHHHHHHHHHhcccchhHHHHHHHHHHHhCCCCChhHHhHHHHHHHhcCCHHH
Q 003584 411 GCAYHGSYEEALKYFSDMRISGICPDHVVVSSILSACAELTVLEFGQQVHAVFLKSGGCSSLSVDNSLVLVYAKCGCIND 490 (809)
Q Consensus 411 ~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~y~k~g~~~~ 490 (809)
.|...++|.+|.++-+..+ -|...|. +.- .+.++++ +.. + ---|.++-+.|+.-+
T Consensus 887 tCv~LnQW~~avelaq~~~----l~qv~tl---iak--------~aaqll~---~~~------~-~eaIe~~Rka~~~~d 941 (1189)
T KOG2041|consen 887 TCVELNQWGEAVELAQRFQ----LPQVQTL---IAK--------QAAQLLA---DAN------H-MEAIEKDRKAGRHLD 941 (1189)
T ss_pred HHHHHHHHHHHHHHHHhcc----chhHHHH---HHH--------HHHHHHh---hcc------h-HHHHHHhhhcccchh
Confidence 6777788888888776654 2333332 111 1111111 100 0 112566778888777
Q ss_pred HHHHHHhcCCCCe---eechHHHHHHH----hcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHH
Q 003584 491 ANRVFDSMHTRDV---ITWTALIMGCA----QNGKGKEALQFYDQMLARGTKPDYITFVGLLFACSHAGLAENARWYFES 563 (809)
Q Consensus 491 A~~~~~~~~~~~~---~~~~~li~~~~----~~g~~~~A~~l~~~m~~~g~~pd~~t~~~ll~a~~~~g~~~~a~~~~~~ 563 (809)
|.+++.+|.++.. +.+-.+=..|. -..+..++++-.++....|...|... +...|...++-.+.+.
T Consensus 942 aarll~qmae~e~~K~~p~lr~KklYVL~AlLvE~h~~~ik~~~~~~~~g~~~dat~-------lles~~l~~~~ri~~n 1014 (1189)
T KOG2041|consen 942 AARLLSQMAEREQEKYVPYLRLKKLYVLGALLVENHRQTIKELRKIDKHGFLEDATD-------LLESGLLAEQSRILEN 1014 (1189)
T ss_pred HHHHHHHHhHHHhhccCCHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhcCcchhhhh-------hhhhhhhhhHHHHHHh
Confidence 7777777763211 12222211111 11233445555555555554433322 1223333333333332
Q ss_pred hHHhhCCCCChHHHHHHHHHHhhcCCHHHHHHHHHhCcC----CCCHHHHHHHHHHHHhcCChhHHHHHHHHHhcc
Q 003584 564 MDKVYGIKPGPDHYACMIDLLGRSGKLIEAKALLDQMVG----EPDATVWKALLSACRVHGDLELGERAANNLFEL 635 (809)
Q Consensus 564 m~~~~~~~p~~~~~~~li~~~~~~g~~~eA~~~~~~m~~----~p~~~~~~~ll~a~~~~g~~~~A~~~~~~~~~~ 635 (809)
.-. -....|+-.|..--...|.++.|+..--.+.. -|-..+|..|.-+.+....+...-++|.++...
T Consensus 1015 ~Wr----gAEAyHFmilAQrql~eg~v~~Al~Tal~L~DYEd~lpP~eiySllALaaca~raFGtCSKAfmkLe~~ 1086 (1189)
T KOG2041|consen 1015 TWR----GAEAYHFMILAQRQLFEGRVKDALQTALILSDYEDFLPPAEIYSLLALAACAVRAFGTCSKAFMKLEAF 1086 (1189)
T ss_pred hhh----hHHHHHHHHHHHHHHHhchHHHHHHHHhhhccHhhcCCHHHHHHHHHHHHhhhhhhhhhHHHHHHHHhh
Confidence 211 01234444555556677888888765433332 144456665554444444444455555555443
No 171
>COG4235 Cytochrome c biogenesis factor [Posttranslational modification, protein turnover, chaperones]
Probab=97.20 E-value=0.0014 Score=64.34 Aligned_cols=100 Identities=11% Similarity=0.068 Sum_probs=84.5
Q ss_pred CChHHHHHHHHHHhhcCCHHHHHHHHHhCcC--CCCHHHHHHHHHHHHhcC---ChhHHHHHHHHHhccCCCCCccHHhH
Q 003584 572 PGPDHYACMIDLLGRSGKLIEAKALLDQMVG--EPDATVWKALLSACRVHG---DLELGERAANNLFELEPMNAMPYVQL 646 (809)
Q Consensus 572 p~~~~~~~li~~~~~~g~~~eA~~~~~~m~~--~p~~~~~~~ll~a~~~~g---~~~~A~~~~~~~~~~~p~~~~~~~~l 646 (809)
-|.+.|-.|...|.+.|+...|..-|.+... .+++..+..+..++..+. ...++..++++++.++|.|..+...|
T Consensus 154 ~d~egW~~Lg~~ym~~~~~~~A~~AY~~A~rL~g~n~~~~~g~aeaL~~~a~~~~ta~a~~ll~~al~~D~~~iral~lL 233 (287)
T COG4235 154 GDAEGWDLLGRAYMALGRASDALLAYRNALRLAGDNPEILLGLAEALYYQAGQQMTAKARALLRQALALDPANIRALSLL 233 (287)
T ss_pred CCchhHHHHHHHHHHhcchhHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcCCcccHHHHHHHHHHHhcCCccHHHHHHH
Confidence 3668888888889999999998888887763 356667777777765443 47888999999999999999999999
Q ss_pred hhhhhhcCChhHHHHHHHHHHhCCC
Q 003584 647 SNMYSTAGKWEDAARVRKLMKSRGI 671 (809)
Q Consensus 647 ~~~~~~~g~~~~A~~~~~~m~~~~~ 671 (809)
+..+...|++.+|...++.|.+...
T Consensus 234 A~~afe~g~~~~A~~~Wq~lL~~lp 258 (287)
T COG4235 234 AFAAFEQGDYAEAAAAWQMLLDLLP 258 (287)
T ss_pred HHHHHHcccHHHHHHHHHHHHhcCC
Confidence 9999999999999999999998754
No 172
>PF13371 TPR_9: Tetratricopeptide repeat
Probab=97.14 E-value=0.001 Score=51.99 Aligned_cols=58 Identities=16% Similarity=0.145 Sum_probs=50.7
Q ss_pred HHHHHhcCChhHHHHHHHHHhccCCCCCccHHhHhhhhhhcCChhHHHHHHHHHHhCC
Q 003584 613 LSACRVHGDLELGERAANNLFELEPMNAMPYVQLSNMYSTAGKWEDAARVRKLMKSRG 670 (809)
Q Consensus 613 l~a~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~ 670 (809)
...|...++++.|.+.++++++++|+++..+...+.+|...|++++|.+.++...+.+
T Consensus 2 ~~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~~a~~~~~~g~~~~A~~~l~~~l~~~ 59 (73)
T PF13371_consen 2 KQIYLQQEDYEEALEVLERALELDPDDPELWLQRARCLFQLGRYEEALEDLERALELS 59 (73)
T ss_pred HHHHHhCCCHHHHHHHHHHHHHhCcccchhhHHHHHHHHHhccHHHHHHHHHHHHHHC
Confidence 3567888999999999999999999999999999999999999999999998887654
No 173
>KOG2053 consensus Mitochondrial inheritance and actin cytoskeleton organization protein [Cytoskeleton]
Probab=97.13 E-value=0.73 Score=52.11 Aligned_cols=157 Identities=13% Similarity=0.046 Sum_probs=92.2
Q ss_pred echHHHHHHHhcCChH---HHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHhHHhhCCCCChHHHHHHH
Q 003584 505 TWTALIMGCAQNGKGK---EALQFYDQMLARGTKPDYITFVGLLFACSHAGLAENARWYFESMDKVYGIKPGPDHYACMI 581 (809)
Q Consensus 505 ~~~~li~~~~~~g~~~---~A~~l~~~m~~~g~~pd~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~~~~~~~li 581 (809)
+-+.|+..+.+.++.. +|+-+++.-... -+-|..+-..++..|+-.|-+..|.+.|..+.-+ .|.-|..-|- +.
T Consensus 438 av~~Lid~~rktnd~~~l~eaI~LLE~glt~-s~hnf~~KLlLiriY~~lGa~p~a~~~y~tLdIK-~IQ~DTlgh~-~~ 514 (932)
T KOG2053|consen 438 AVNHLIDLWRKTNDLTDLFEAITLLENGLTK-SPHNFQTKLLLIRIYSYLGAFPDAYELYKTLDIK-NIQTDTLGHL-IF 514 (932)
T ss_pred HHHHHHHHHHhcCcHHHHHHHHHHHHHHhhc-CCccHHHHHHHHHHHHHhcCChhHHHHHHhcchH-HhhhccchHH-HH
Confidence 3567788888888755 555566555543 1334456667888999999999999999888665 6666654332 23
Q ss_pred HHHhhcCCHHHHHHHHHhCcC-----CCCHHHHHHHHHHHHhcCChhHHHHHHHHHhccCC----CCCccHHhHhhhhhh
Q 003584 582 DLLGRSGKLIEAKALLDQMVG-----EPDATVWKALLSACRVHGDLELGERAANNLFELEP----MNAMPYVQLSNMYST 652 (809)
Q Consensus 582 ~~~~~~g~~~eA~~~~~~m~~-----~p~~~~~~~ll~a~~~~g~~~~A~~~~~~~~~~~p----~~~~~~~~l~~~~~~ 652 (809)
..+...|++..+...++.... ..+..- ++....++|.+..-.++..---.+.- .-..+-.........
T Consensus 515 ~~~~t~g~~~~~s~~~~~~lkfy~~~~kE~~e---yI~~AYr~g~ySkI~em~~fr~rL~~S~q~~a~~VE~~~l~ll~~ 591 (932)
T KOG2053|consen 515 RRAETSGRSSFASNTFNEHLKFYDSSLKETPE---YIALAYRRGAYSKIPEMLAFRDRLMHSLQKWACRVENLQLSLLCN 591 (932)
T ss_pred HHHHhcccchhHHHHHHHHHHHHhhhhhhhHH---HHHHHHHcCchhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 445566777766666655431 112222 23333455665554443321111211 011223355667788
Q ss_pred cCChhHHHHHHHHHH
Q 003584 653 AGKWEDAARVRKLMK 667 (809)
Q Consensus 653 ~g~~~~A~~~~~~m~ 667 (809)
.++.++-...+..|+
T Consensus 592 ~~~~~q~~~~~~~~~ 606 (932)
T KOG2053|consen 592 ADRGTQLLKLLESMK 606 (932)
T ss_pred CCcHHHHHHHHhccc
Confidence 888888888888876
No 174
>PF05843 Suf: Suppressor of forked protein (Suf); InterPro: IPR008847 This domain consists of several eukaryotic suppressor of forked (Suf) like proteins. The Drosophila melanogaster suppressor of forked [Su(f)] protein shares homology with the Saccharomyces cerevisiae RNA14 protein and the 77 kDa subunit of Homo sapiens cleavage stimulation factor, which are proteins involved in mRNA 3' end formation. This suggests a role for Su(f) in mRNA 3' end formation in Drosophila. The su(f) gene produces three transcripts; two of them are polyadenylated at the end of the transcription unit, and one is a truncated transcript, polyadenylated in intron 4. It is thought that su(f) plays a role in the regulation of poly(A) site utilisation and the GU-rich sequence is important for this regulation to occur [].; GO: 0006397 mRNA processing, 0005634 nucleus; PDB: 2L9B_B 2OND_B 2OOE_A 4E85_B 4EBA_C 4E6H_A 2UY1_B.
Probab=97.09 E-value=0.0099 Score=60.48 Aligned_cols=133 Identities=20% Similarity=0.300 Sum_probs=98.0
Q ss_pred echHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHH-HHccCCHHHHHHHHHHhHHhhCCCCChHHHHHHHHH
Q 003584 505 TWTALIMGCAQNGKGKEALQFYDQMLARGTKPDYITFVGLLFA-CSHAGLAENARWYFESMDKVYGIKPGPDHYACMIDL 583 (809)
Q Consensus 505 ~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~pd~~t~~~ll~a-~~~~g~~~~a~~~~~~m~~~~~~~p~~~~~~~li~~ 583 (809)
+|-.++....+.+..+.|..+|.+.++.+ ......|...... +...++.+.|.++|+...+.+ ..+...|...++.
T Consensus 3 v~i~~m~~~~r~~g~~~aR~vF~~a~~~~-~~~~~vy~~~A~~E~~~~~d~~~A~~Ife~glk~f--~~~~~~~~~Y~~~ 79 (280)
T PF05843_consen 3 VWIQYMRFMRRTEGIEAARKVFKRARKDK-RCTYHVYVAYALMEYYCNKDPKRARKIFERGLKKF--PSDPDFWLEYLDF 79 (280)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHCCC-CS-THHHHHHHHHHHHTCS-HHHHHHHHHHHHHHH--TT-HHHHHHHHHH
T ss_pred HHHHHHHHHHHhCChHHHHHHHHHHHcCC-CCCHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHC--CCCHHHHHHHHHH
Confidence 46777777777778888888888887532 2233344444333 334567777999999988764 4466778888999
Q ss_pred HhhcCCHHHHHHHHHhCcCC-CC----HHHHHHHHHHHHhcCChhHHHHHHHHHhccCCCCC
Q 003584 584 LGRSGKLIEAKALLDQMVGE-PD----ATVWKALLSACRVHGDLELGERAANNLFELEPMNA 640 (809)
Q Consensus 584 ~~~~g~~~eA~~~~~~m~~~-p~----~~~~~~ll~a~~~~g~~~~A~~~~~~~~~~~p~~~ 640 (809)
+.+.|+.+.|..+|++.... |. ..+|...+.--..+|+.+....+.+++.+.-|++.
T Consensus 80 l~~~~d~~~aR~lfer~i~~l~~~~~~~~iw~~~i~fE~~~Gdl~~v~~v~~R~~~~~~~~~ 141 (280)
T PF05843_consen 80 LIKLNDINNARALFERAISSLPKEKQSKKIWKKFIEFESKYGDLESVRKVEKRAEELFPEDN 141 (280)
T ss_dssp HHHTT-HHHHHHHHHHHCCTSSCHHHCHHHHHHHHHHHHHHS-HHHHHHHHHHHHHHTTTS-
T ss_pred HHHhCcHHHHHHHHHHHHHhcCchhHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhhhhh
Confidence 99999999999999998863 33 34999999999999999999999999999888643
No 175
>PF13431 TPR_17: Tetratricopeptide repeat
Probab=97.06 E-value=0.00024 Score=45.44 Aligned_cols=32 Identities=38% Similarity=0.633 Sum_probs=30.5
Q ss_pred HHHHhccCCCCCccHHhHhhhhhhcCChhHHH
Q 003584 629 ANNLFELEPMNAMPYVQLSNMYSTAGKWEDAA 660 (809)
Q Consensus 629 ~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~ 660 (809)
++++++++|+++.+|..|+.+|...|++++|+
T Consensus 2 y~kAie~~P~n~~a~~nla~~~~~~g~~~~A~ 33 (34)
T PF13431_consen 2 YKKAIELNPNNAEAYNNLANLYLNQGDYEEAI 33 (34)
T ss_pred hHHHHHHCCCCHHHHHHHHHHHHHCcCHHhhc
Confidence 68899999999999999999999999999986
No 176
>KOG1538 consensus Uncharacterized conserved protein WDR10, contains WD40 repeats [General function prediction only]
Probab=97.03 E-value=0.18 Score=54.25 Aligned_cols=209 Identities=14% Similarity=0.081 Sum_probs=111.6
Q ss_pred HHHHHHhccCCchHHHHHHHHHHHhcCCHHHHHHHHhhcCCCCHhHHHHHHHHHHhcCCHHHHHHHHHHHhhcCCccCHh
Q 003584 359 HSLIVKTGFEGYKFVNNALIDMYAKQGNLDCAFMVFNLMQDKDVISWTSLITGCAYHGSYEEALKYFSDMRISGICPDHV 438 (809)
Q Consensus 359 ~~~~~~~g~~~~~~~~~~li~~y~~~g~~~~A~~~f~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~ 438 (809)
++.+.+.|-.|+... +.+.++-.|.+.+|-++|.+ +|....|+++|.+|+--.
T Consensus 623 L~~~k~rge~P~~iL---lA~~~Ay~gKF~EAAklFk~------------------~G~enRAlEmyTDlRMFD------ 675 (1081)
T KOG1538|consen 623 LEERKKRGETPNDLL---LADVFAYQGKFHEAAKLFKR------------------SGHENRALEMYTDLRMFD------ 675 (1081)
T ss_pred HHHHHhcCCCchHHH---HHHHHHhhhhHHHHHHHHHH------------------cCchhhHHHHHHHHHHHH------
Confidence 344555565565533 34456667788888777643 455666666666654210
Q ss_pred HHHHHHHHHhcccchhHHHHHHHHHHHhCCCCChhHHhHHHHHHHhcCCHHHHHHHHHhcCCCCeeechHHHHHHHhcCC
Q 003584 439 VVSSILSACAELTVLEFGQQVHAVFLKSGGCSSLSVDNSLVLVYAKCGCINDANRVFDSMHTRDVITWTALIMGCAQNGK 518 (809)
Q Consensus 439 t~~~ll~a~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~y~k~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~ 518 (809)
...-+...|..++-+.+...-.+. ..++.--.+-..|+...|+.++|..+. ..+|-
T Consensus 676 ----~aQE~~~~g~~~eKKmL~RKRA~W--Ar~~kePkaAAEmLiSaGe~~KAi~i~------------------~d~gW 731 (1081)
T KOG1538|consen 676 ----YAQEFLGSGDPKEKKMLIRKRADW--ARNIKEPKAAAEMLISAGEHVKAIEIC------------------GDHGW 731 (1081)
T ss_pred ----HHHHHhhcCChHHHHHHHHHHHHH--hhhcCCcHHHHHHhhcccchhhhhhhh------------------hcccH
Confidence 111122233333322222211110 001111123345556667666665543 34455
Q ss_pred hHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHhHHhhCCCCChHHHHHHHHHHhhcCCHHHHHHHHH
Q 003584 519 GKEALQFYDQMLARGTKPDYITFVGLLFACSHAGLAENARWYFESMDKVYGIKPGPDHYACMIDLLGRSGKLIEAKALLD 598 (809)
Q Consensus 519 ~~~A~~l~~~m~~~g~~pd~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~~~~~~~li~~~~~~g~~~eA~~~~~ 598 (809)
.+-++++-+++-. .+..+...+..-+.+...+..|-++|..|-. ...++++....|++.||..+-+
T Consensus 732 ~d~lidI~rkld~----~ere~l~~~a~ylk~l~~~gLAaeIF~k~gD----------~ksiVqlHve~~~W~eAFalAe 797 (1081)
T KOG1538|consen 732 VDMLIDIARKLDK----AEREPLLLCATYLKKLDSPGLAAEIFLKMGD----------LKSLVQLHVETQRWDEAFALAE 797 (1081)
T ss_pred HHHHHHHHhhcch----hhhhHHHHHHHHHhhccccchHHHHHHHhcc----------HHHHhhheeecccchHhHhhhh
Confidence 5555555544432 2334555555555666777788888887753 2467888999999999999999
Q ss_pred hCcC-CCCHH-HHHH----------HHHHHHhcCChhHHHHHHHHH
Q 003584 599 QMVG-EPDAT-VWKA----------LLSACRVHGDLELGERAANNL 632 (809)
Q Consensus 599 ~m~~-~p~~~-~~~~----------ll~a~~~~g~~~~A~~~~~~~ 632 (809)
+.|. .||+. -|.. --.|+.+.|+..+|..+++++
T Consensus 798 ~hPe~~~dVy~pyaqwLAE~DrFeEAqkAfhkAGr~~EA~~vLeQL 843 (1081)
T KOG1538|consen 798 KHPEFKDDVYMPYAQWLAENDRFEEAQKAFHKAGRQREAVQVLEQL 843 (1081)
T ss_pred hCccccccccchHHHHhhhhhhHHHHHHHHHHhcchHHHHHHHHHh
Confidence 8885 34443 1211 123455555666666555555
No 177
>CHL00033 ycf3 photosystem I assembly protein Ycf3
Probab=97.03 E-value=0.018 Score=53.75 Aligned_cols=63 Identities=19% Similarity=0.152 Sum_probs=41.0
Q ss_pred eechHHHHHHHhcCChHHHHHHHHHHHHCCCCCC--HHHHHHHHHHHHccCCHHHHHHHHHHhHH
Q 003584 504 ITWTALIMGCAQNGKGKEALQFYDQMLARGTKPD--YITFVGLLFACSHAGLAENARWYFESMDK 566 (809)
Q Consensus 504 ~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~pd--~~t~~~ll~a~~~~g~~~~a~~~~~~m~~ 566 (809)
..|..+...+...|++++|+..|++.......|. ..++..+...+...|+.++|...++....
T Consensus 36 ~~~~~~g~~~~~~g~~~~A~~~~~~al~l~~~~~~~~~~~~~lg~~~~~~g~~~eA~~~~~~Al~ 100 (168)
T CHL00033 36 FTYYRDGMSAQSEGEYAEALQNYYEAMRLEIDPYDRSYILYNIGLIHTSNGEHTKALEYYFQALE 100 (168)
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHhccccchhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 3455666667777888888888877776422221 23566666777777777777777766653
No 178
>PF14559 TPR_19: Tetratricopeptide repeat; PDB: 2R5S_A 3QDN_B 3QOU_A 3ASG_A 3ASD_A 3AS5_A 3AS4_A 3ASH_B 3FP3_A 3LCA_A ....
Probab=97.03 E-value=0.0005 Score=52.89 Aligned_cols=53 Identities=15% Similarity=0.281 Sum_probs=39.1
Q ss_pred HhcCChhHHHHHHHHHhccCCCCCccHHhHhhhhhhcCChhHHHHHHHHHHhC
Q 003584 617 RVHGDLELGERAANNLFELEPMNAMPYVQLSNMYSTAGKWEDAARVRKLMKSR 669 (809)
Q Consensus 617 ~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~ 669 (809)
...|++++|+..++++++.+|+++.+...++.+|.+.|++++|.++++++...
T Consensus 2 l~~~~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~l~~~~~~ 54 (68)
T PF14559_consen 2 LKQGDYDEAIELLEKALQRNPDNPEARLLLAQCYLKQGQYDEAEELLERLLKQ 54 (68)
T ss_dssp HHTTHHHHHHHHHHHHHHHTTTSHHHHHHHHHHHHHTT-HHHHHHHHHCCHGG
T ss_pred hhccCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Confidence 35677777788888877778877777777888888888888887777766544
No 179
>PF04840 Vps16_C: Vps16, C-terminal region; InterPro: IPR006925 This protein forms part of the Class C vacuolar protein sorting (Vps) complex. Vps16 is essential for vacuolar protein sorting, which is essential for viability in plants, but not yeast []. The Class C Vps complex is required for SNARE-mediated membrane fusion at the lysosome-like yeast vacuole. It is thought to play essential roles in membrane docking and fusion at the Golgi-to-endosome and endosome-to-vacuole stages of transport []. The role of VPS16 in this complex is not known.; GO: 0006886 intracellular protein transport, 0005737 cytoplasm
Probab=97.03 E-value=0.51 Score=48.63 Aligned_cols=107 Identities=17% Similarity=0.147 Sum_probs=81.1
Q ss_pred HHHHHHHHHHhCCChHHHHHHHhccCCCCeeeHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCcccHHHHHHHhhcCCC
Q 003584 272 VQSALIDMYAKCGDLDSARRLLEYSEIDNEVSWNSMIVGFARQGFHKEALSLFKKMHARDIKIDDFTYPSVLNCFASNID 351 (809)
Q Consensus 272 ~~~~Li~~y~~~g~~~~A~~~f~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~ 351 (809)
+.+..|.-+...|+...|.++..+...||..-|...|.+|+..++|++-.++... +-.+.-|...+.+|...|+
T Consensus 179 Sl~~Ti~~li~~~~~k~A~kl~k~Fkv~dkrfw~lki~aLa~~~~w~eL~~fa~s------kKsPIGyepFv~~~~~~~~ 252 (319)
T PF04840_consen 179 SLNDTIRKLIEMGQEKQAEKLKKEFKVPDKRFWWLKIKALAENKDWDELEKFAKS------KKSPIGYEPFVEACLKYGN 252 (319)
T ss_pred CHHHHHHHHHHCCCHHHHHHHHHHcCCcHHHHHHHHHHHHHhcCCHHHHHHHHhC------CCCCCChHHHHHHHHHCCC
Confidence 3444466667788999999999888889999999999999999999887765432 2245788888888888888
Q ss_pred hHHHHHHHHHHHHhccCCchHHHHHHHHHHHhcCCHHHHHHHH
Q 003584 352 LNNAKSVHSLIVKTGFEGYKFVNNALIDMYAKQGNLDCAFMVF 394 (809)
Q Consensus 352 ~~~a~~i~~~~~~~g~~~~~~~~~~li~~y~~~g~~~~A~~~f 394 (809)
..+|......+ .+..-+.+|.++|++.+|.+.-
T Consensus 253 ~~eA~~yI~k~----------~~~~rv~~y~~~~~~~~A~~~A 285 (319)
T PF04840_consen 253 KKEASKYIPKI----------PDEERVEMYLKCGDYKEAAQEA 285 (319)
T ss_pred HHHHHHHHHhC----------ChHHHHHHHHHCCCHHHHHHHH
Confidence 88877766551 1255677888888888886653
No 180
>PF07079 DUF1347: Protein of unknown function (DUF1347); InterPro: IPR010764 This family consists of several hypothetical bacterial proteins of around 610 residues in length. Members of this family are highly conserved and seem to be specific to Chlamydia species. The function of this family is unknown.
Probab=97.02 E-value=0.55 Score=48.90 Aligned_cols=270 Identities=13% Similarity=0.064 Sum_probs=145.6
Q ss_pred HhcCCChHHHHHHHHhcCCC---C------cchHHHHHHHHHccCChhHHHHHhhhCCCCC-cchHHHHHHHH--HcCCC
Q 003584 46 FSNSGEIDEAGQLFEKMSDR---D------GFTWNTMIAAYANSGRLREAKKLFNETPFKN-FFTWSSLIYGY--SNYGL 113 (809)
Q Consensus 46 ~~~~~~~~~a~~~~~~~~~~---~------~~~~~~li~~~~~~g~~~~A~~~f~~~~~~~-~~~~~~li~~~--~~~g~ 113 (809)
+-+.+++.+|..+|.+..+. + .+..+.++++|.. .+++.......+..+.. ...|-.|..+. -+.+.
T Consensus 16 Lqkq~~~~esEkifskI~~e~~~~~f~lkeEvl~grilnAffl-~nld~Me~~l~~l~~~~~~s~~l~LF~~L~~Y~~k~ 94 (549)
T PF07079_consen 16 LQKQKKFQESEKIFSKIYDEKESSPFLLKEEVLGGRILNAFFL-NNLDLMEKQLMELRQQFGKSAYLPLFKALVAYKQKE 94 (549)
T ss_pred HHHHhhhhHHHHHHHHHHHHhhcchHHHHHHHHhhHHHHHHHH-hhHHHHHHHHHHHHHhcCCchHHHHHHHHHHHHhhh
Confidence 35678899999998877642 2 3456778888864 45665555555544322 34566666554 36788
Q ss_pred chhHHHHHHHHHHc--CCCCC-----------cccH-HHHHHHhhcCCCchHHHHHHHHHHHhCCC----CchHHHHHHH
Q 003584 114 DIEAFELFWQMQLE--GYRPS-----------QYTL-DNVLRLCSLKGLLQRGEQFHGYAIKTCFD----LNAFVVTGLV 175 (809)
Q Consensus 114 ~~~A~~~~~~m~~~--g~~p~-----------~~t~-~~ll~~~~~~~~~~~a~~~~~~~~~~g~~----~~~~~~~~li 175 (809)
+.+|++.+..-.+. +..|. .+.+ +.....+...|.+.+|+.+..+++..=+. -+...|+.++
T Consensus 95 ~~kal~~ls~w~~~~~~~~~~~Ld~ni~~l~~df~l~~i~a~sLIe~g~f~EgR~iLn~i~~~llkrE~~w~~d~yd~~v 174 (549)
T PF07079_consen 95 YRKALQALSVWKEQIKGTESPWLDTNIQQLFSDFFLDEIEAHSLIETGRFSEGRAILNRIIERLLKRECEWNSDMYDRAV 174 (549)
T ss_pred HHHHHHHHHHHHhhhcccccchhhhhHHHHhhHHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHhhhhhcccHHHHHHHH
Confidence 88998888776654 32221 1111 22345667888888888888877755443 6778888877
Q ss_pred HhhhcCCChhHHHHHhhhCCCCCCcccHHHHHHHHhhCCChHHHHHHHHHHHHCCCCCCcchHHHHHHHHhcc--CChHH
Q 003584 176 DMYAKCKCIFEAEYLFKMFPDGKNHVAWTTMITGYSQNGYGFKAIECFRDMRVEGVESNQFTFPSILTACAAV--SARDF 253 (809)
Q Consensus 176 ~~y~~~g~~~~A~~~f~~~~~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~~~~~~--~~~~~ 253 (809)
-++++.=-++-- +.+.. .=..-|--||..|.+.=..-+ .-.-..+.|....+..++...... ..+.-
T Consensus 175 lmlsrSYfLEl~----e~~s~-dl~pdyYemilfY~kki~~~d------~~~Y~k~~peeeL~s~imqhlfi~p~e~l~~ 243 (549)
T PF07079_consen 175 LMLSRSYFLELK----ESMSS-DLYPDYYEMILFYLKKIHAFD------QRPYEKFIPEEELFSTIMQHLFIVPKERLPP 243 (549)
T ss_pred HHHhHHHHHHHH----Hhccc-ccChHHHHHHHHHHHHHHHHh------hchHHhhCcHHHHHHHHHHHHHhCCHhhccH
Confidence 777764222211 11111 111235566666654321111 111112345555555555544322 23334
Q ss_pred HHHHHHHHHHhCCCCchh-HHHHHHHHHHhCCChHHHHHHHhccC--------CCCeeeHHHHHHHHHhcCChhHHHHHH
Q 003584 254 GAQVHGCILSSGFEANVY-VQSALIDMYAKCGDLDSARRLLEYSE--------IDNEVSWNSMIVGFARQGFHKEALSLF 324 (809)
Q Consensus 254 a~~~~~~~~~~g~~~~~~-~~~~Li~~y~~~g~~~~A~~~f~~~~--------~~~~~~~~~li~~~~~~g~~~~A~~~~ 324 (809)
-.+++....+.-+.|+.. +...|+.-+.+ +.+++..+-+.+. +.=+.++..++....+.++..+|-+.+
T Consensus 244 ~mq~l~~We~~yv~p~~~LVi~~L~~~f~~--~~e~~~~~ce~ia~~~i~~Lke~li~~F~~~Ls~~Vk~~~T~~a~q~l 321 (549)
T PF07079_consen 244 LMQILENWENFYVHPNYDLVIEPLKQQFMS--DPEQVGHFCEAIASSKIEKLKEELIDRFGNLLSFKVKQVQTEEAKQYL 321 (549)
T ss_pred HHHHHHHHHhhccCCchhHHHHHHHHHHhc--ChHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHH
Confidence 445555554444555533 34445555544 4444444433221 122345666666666666666666666
Q ss_pred HHHHH
Q 003584 325 KKMHA 329 (809)
Q Consensus 325 ~~m~~ 329 (809)
.-+..
T Consensus 322 ~lL~~ 326 (549)
T PF07079_consen 322 ALLKI 326 (549)
T ss_pred HHHHh
Confidence 55543
No 181
>PF14938 SNAP: Soluble NSF attachment protein, SNAP; PDB: 1QQE_A 2IFU_A.
Probab=97.02 E-value=0.5 Score=48.28 Aligned_cols=98 Identities=15% Similarity=0.116 Sum_probs=53.7
Q ss_pred HHHHHHHhcCChHHHHHHHHHHHHCCCCC-----CHH-HHHHHHHHHHccCCHHHHHHHHHHhHHh-hCCCCC--hHHHH
Q 003584 508 ALIMGCAQNGKGKEALQFYDQMLARGTKP-----DYI-TFVGLLFACSHAGLAENARWYFESMDKV-YGIKPG--PDHYA 578 (809)
Q Consensus 508 ~li~~~~~~g~~~~A~~l~~~m~~~g~~p-----d~~-t~~~ll~a~~~~g~~~~a~~~~~~m~~~-~~~~p~--~~~~~ 578 (809)
.+...+.+.|++++|+++|++....-... +.. .|...+-++...|+...|.+.++..... .++..+ .....
T Consensus 160 ~~A~l~~~l~~y~~A~~~~e~~~~~~l~~~l~~~~~~~~~l~a~l~~L~~~D~v~A~~~~~~~~~~~~~F~~s~E~~~~~ 239 (282)
T PF14938_consen 160 KAADLYARLGRYEEAIEIYEEVAKKCLENNLLKYSAKEYFLKAILCHLAMGDYVAARKALERYCSQDPSFASSREYKFLE 239 (282)
T ss_dssp HHHHHHHHTT-HHHHHHHHHHHHHTCCCHCTTGHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHGTTSTTSTTSHHHHHHH
T ss_pred HHHHHHHHhCCHHHHHHHHHHHHHHhhcccccchhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCCCcHHHHHHH
Confidence 45566778888888888888877643221 111 2333344556678888888888776532 122222 23444
Q ss_pred HHHHHHhh--cCCHHHHHHHHHhCcCCCCH
Q 003584 579 CMIDLLGR--SGKLIEAKALLDQMVGEPDA 606 (809)
Q Consensus 579 ~li~~~~~--~g~~~eA~~~~~~m~~~p~~ 606 (809)
.|++++-. ...+++|..-|+.+. +.|.
T Consensus 240 ~l~~A~~~~D~e~f~~av~~~d~~~-~ld~ 268 (282)
T PF14938_consen 240 DLLEAYEEGDVEAFTEAVAEYDSIS-RLDN 268 (282)
T ss_dssp HHHHHHHTT-CCCHHHHCHHHTTSS----H
T ss_pred HHHHHHHhCCHHHHHHHHHHHcccC-ccHH
Confidence 55555543 345667777776665 4443
No 182
>PRK10153 DNA-binding transcriptional activator CadC; Provisional
Probab=97.01 E-value=0.0092 Score=65.88 Aligned_cols=144 Identities=16% Similarity=0.129 Sum_probs=105.5
Q ss_pred cCCCCeeechHHHHHHHhc--C---ChHHHHHHHHHHHHCCCCCCHH-HHHHHHHHHHcc--------CCHHHHHHHHHH
Q 003584 498 MHTRDVITWTALIMGCAQN--G---KGKEALQFYDQMLARGTKPDYI-TFVGLLFACSHA--------GLAENARWYFES 563 (809)
Q Consensus 498 ~~~~~~~~~~~li~~~~~~--g---~~~~A~~l~~~m~~~g~~pd~~-t~~~ll~a~~~~--------g~~~~a~~~~~~ 563 (809)
....|...|...+.|.... + ...+|..+|++.++ ..||.. .+..+..++... +++..+.+..+.
T Consensus 332 ~~~~~~~Ay~~~lrg~~~~~~~~~~~~~~A~~lle~Ai~--ldP~~a~a~A~la~~~~~~~~~~~~~~~~l~~a~~~~~~ 409 (517)
T PRK10153 332 GLPHQGAALTLFYQAHHYLNSGDAKSLNKASDLLEEILK--SEPDFTYAQAEKALADIVRHSQQPLDEKQLAALSTELDN 409 (517)
T ss_pred cCCCCHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHH--hCCCcHHHHHHHHHHHHHHHhcCCccHHHHHHHHHHHHH
Confidence 3356788999999886543 2 36799999999999 478764 555554444322 123344444443
Q ss_pred hHHhhCCCCChHHHHHHHHHHhhcCCHHHHHHHHHhCcC-CCCHHHHHHHHHHHHhcCChhHHHHHHHHHhccCCCCCcc
Q 003584 564 MDKVYGIKPGPDHYACMIDLLGRSGKLIEAKALLDQMVG-EPDATVWKALLSACRVHGDLELGERAANNLFELEPMNAMP 642 (809)
Q Consensus 564 m~~~~~~~p~~~~~~~li~~~~~~g~~~eA~~~~~~m~~-~p~~~~~~~ll~a~~~~g~~~~A~~~~~~~~~~~p~~~~~ 642 (809)
.........+...|..+.-.....|++++|...++++.. .|+...|..+...+...|+.++|...+++++.++|.++..
T Consensus 410 a~al~~~~~~~~~~~ala~~~~~~g~~~~A~~~l~rAl~L~ps~~a~~~lG~~~~~~G~~~eA~~~~~~A~~L~P~~pt~ 489 (517)
T PRK10153 410 IVALPELNVLPRIYEILAVQALVKGKTDEAYQAINKAIDLEMSWLNYVLLGKVYELKGDNRLAADAYSTAFNLRPGENTL 489 (517)
T ss_pred hhhcccCcCChHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCchH
Confidence 322112333557788887777788999999999999885 5888899999999999999999999999999999998864
Q ss_pred H
Q 003584 643 Y 643 (809)
Q Consensus 643 ~ 643 (809)
|
T Consensus 490 ~ 490 (517)
T PRK10153 490 Y 490 (517)
T ss_pred H
Confidence 3
No 183
>PF13414 TPR_11: TPR repeat; PDB: 2HO1_B 2FI7_B 2DBA_A 3Q4A_B 2C2L_D 3Q47_B 3Q49_B 2PL2_B 3IEG_B 2FBN_A ....
Probab=97.00 E-value=0.0013 Score=50.73 Aligned_cols=65 Identities=18% Similarity=0.277 Sum_probs=53.8
Q ss_pred ChHHHHHHHHHHhhcCCHHHHHHHHHhCcC-CC-CHHHHHHHHHHHHhcC-ChhHHHHHHHHHhccCC
Q 003584 573 GPDHYACMIDLLGRSGKLIEAKALLDQMVG-EP-DATVWKALLSACRVHG-DLELGERAANNLFELEP 637 (809)
Q Consensus 573 ~~~~~~~li~~~~~~g~~~eA~~~~~~m~~-~p-~~~~~~~ll~a~~~~g-~~~~A~~~~~~~~~~~p 637 (809)
+...|..+...+.+.|++++|+..|++... .| ++..|..+..++...| +.++|+..++++++++|
T Consensus 2 ~a~~~~~~g~~~~~~~~~~~A~~~~~~ai~~~p~~~~~~~~~g~~~~~~~~~~~~A~~~~~~al~l~P 69 (69)
T PF13414_consen 2 NAEAWYNLGQIYFQQGDYEEAIEYFEKAIELDPNNAEAYYNLGLAYMKLGKDYEEAIEDFEKALKLDP 69 (69)
T ss_dssp SHHHHHHHHHHHHHTTHHHHHHHHHHHHHHHSTTHHHHHHHHHHHHHHTTTHHHHHHHHHHHHHHHST
T ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHhCccHHHHHHHHHHHHHcCc
Confidence 345677788888888888888888887764 34 4558999999999999 79999999999999887
No 184
>PF14559 TPR_19: Tetratricopeptide repeat; PDB: 2R5S_A 3QDN_B 3QOU_A 3ASG_A 3ASD_A 3AS5_A 3AS4_A 3ASH_B 3FP3_A 3LCA_A ....
Probab=96.91 E-value=0.001 Score=51.13 Aligned_cols=56 Identities=21% Similarity=0.326 Sum_probs=27.0
Q ss_pred hcCCHHHHHHHHHhCcC-CC-CHHHHHHHHHHHHhcCChhHHHHHHHHHhccCCCCCc
Q 003584 586 RSGKLIEAKALLDQMVG-EP-DATVWKALLSACRVHGDLELGERAANNLFELEPMNAM 641 (809)
Q Consensus 586 ~~g~~~eA~~~~~~m~~-~p-~~~~~~~ll~a~~~~g~~~~A~~~~~~~~~~~p~~~~ 641 (809)
..|++++|.++|+++.. .| +..++..+..+|...|++++|...++++...+|+++.
T Consensus 3 ~~~~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~l~~~~~~~~~~~~ 60 (68)
T PF14559_consen 3 KQGDYDEAIELLEKALQRNPDNPEARLLLAQCYLKQGQYDEAEELLERLLKQDPDNPE 60 (68)
T ss_dssp HTTHHHHHHHHHHHHHHHTTTSHHHHHHHHHHHHHTT-HHHHHHHHHCCHGGGTTHHH
T ss_pred hccCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCcCHHH
Confidence 34445555555544432 12 3334445555555555555555555555555555433
No 185
>PF14938 SNAP: Soluble NSF attachment protein, SNAP; PDB: 1QQE_A 2IFU_A.
Probab=96.90 E-value=0.072 Score=54.43 Aligned_cols=92 Identities=17% Similarity=0.237 Sum_probs=49.5
Q ss_pred HHcc-CCHHHHHHHHHHhHHhhCCCCC----hHHHHHHHHHHhhcCCHHHHHHHHHhCcCC----C----CHH-HHHHHH
Q 003584 548 CSHA-GLAENARWYFESMDKVYGIKPG----PDHYACMIDLLGRSGKLIEAKALLDQMVGE----P----DAT-VWKALL 613 (809)
Q Consensus 548 ~~~~-g~~~~a~~~~~~m~~~~~~~p~----~~~~~~li~~~~~~g~~~eA~~~~~~m~~~----p----~~~-~~~~ll 613 (809)
|... |++++|.++|+...+.+.-... ...+..++.++.+.|++++|.++|++.... + +.. .+-..+
T Consensus 124 ye~~~~d~e~Ai~~Y~~A~~~y~~e~~~~~a~~~~~~~A~l~~~l~~y~~A~~~~e~~~~~~l~~~l~~~~~~~~~l~a~ 203 (282)
T PF14938_consen 124 YEEQLGDYEKAIEYYQKAAELYEQEGSPHSAAECLLKAADLYARLGRYEEAIEIYEEVAKKCLENNLLKYSAKEYFLKAI 203 (282)
T ss_dssp HCCTT--HHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHTCCCHCTTGHHHHHHHHHHH
T ss_pred HHHHcCCHHHHHHHHHHHHHHHHHCCChhhHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHhhcccccchhHHHHHHHHH
Confidence 4444 5555555555554433222222 134455667778888888888888765421 1 111 122223
Q ss_pred HHHHhcCChhHHHHHHHHHhccCCCC
Q 003584 614 SACRVHGDLELGERAANNLFELEPMN 639 (809)
Q Consensus 614 ~a~~~~g~~~~A~~~~~~~~~~~p~~ 639 (809)
-.+...||...|...+++..+.+|.-
T Consensus 204 l~~L~~~D~v~A~~~~~~~~~~~~~F 229 (282)
T PF14938_consen 204 LCHLAMGDYVAARKALERYCSQDPSF 229 (282)
T ss_dssp HHHHHTT-HHHHHHHHHHHGTTSTTS
T ss_pred HHHHHcCCHHHHHHHHHHHHhhCCCC
Confidence 34556678888888888888887753
No 186
>PF08579 RPM2: Mitochondrial ribonuclease P subunit (RPM2); InterPro: IPR013888 Ribonuclease P (RNase P) generates mature tRNA molecules by cleaving their 5' ends. Rpm2 is a protein subunit of the yeast mitochondrial RNase P. It has the ability to act as a transcriptional activator in the nucleus, where it plays a role in defining the steady-state levels of mRNAs for some nucleus-encoded mitochondrial components. Rpm2p is also involved in maturation of Rpm1 and in translation of mitochondrial mRNAs [, , ].
Probab=96.90 E-value=0.0081 Score=49.58 Aligned_cols=81 Identities=14% Similarity=0.042 Sum_probs=68.3
Q ss_pred cHHHHHHHHhhCCChHHHHHHHHHHHHCCC-CCCcchHHHHHHHHhccC--------ChHHHHHHHHHHHHhCCCCchhH
Q 003584 202 AWTTMITGYSQNGYGFKAIECFRDMRVEGV-ESNQFTFPSILTACAAVS--------ARDFGAQVHGCILSSGFEANVYV 272 (809)
Q Consensus 202 ~~~~li~~~~~~g~~~~A~~l~~~m~~~g~-~p~~~t~~~ll~~~~~~~--------~~~~a~~~~~~~~~~g~~~~~~~ 272 (809)
+-...|..+..++++.....+|+.+++.|+ .|+..+|+.+|.+.++.. .+-....+++.|+..+++|+..+
T Consensus 27 t~i~~I~~~~~~~d~N~I~~lYqslkRN~i~lPsv~~Yn~VL~Si~~R~lD~~~ie~kl~~LLtvYqDiL~~~lKP~~et 106 (120)
T PF08579_consen 27 TQIDNINSCFENEDYNIINPLYQSLKRNGITLPSVELYNKVLKSIAKRELDSEDIENKLTNLLTVYQDILSNKLKPNDET 106 (120)
T ss_pred HHHHHHHHHHhhcchHHHHHHHHHHHhcCCCCCcHHHHHHHHHHHHHccccchhHHHHHHHHHHHHHHHHHhccCCcHHH
Confidence 334556677777999999999999999999 999999999999987543 34567789999999999999999
Q ss_pred HHHHHHHHHh
Q 003584 273 QSALIDMYAK 282 (809)
Q Consensus 273 ~~~Li~~y~~ 282 (809)
|+.++..+.+
T Consensus 107 Ynivl~~Llk 116 (120)
T PF08579_consen 107 YNIVLGSLLK 116 (120)
T ss_pred HHHHHHHHHH
Confidence 9999987765
No 187
>PRK10866 outer membrane biogenesis protein BamD; Provisional
Probab=96.88 E-value=0.088 Score=52.16 Aligned_cols=170 Identities=14% Similarity=0.047 Sum_probs=102.0
Q ss_pred HHHHHhcCCHHHHHHHHHhcCC--CCe-ee---chHHHHHHHhcCChHHHHHHHHHHHHCCCCCCH--HHHHHHHHHHHc
Q 003584 479 VLVYAKCGCINDANRVFDSMHT--RDV-IT---WTALIMGCAQNGKGKEALQFYDQMLARGTKPDY--ITFVGLLFACSH 550 (809)
Q Consensus 479 i~~y~k~g~~~~A~~~~~~~~~--~~~-~~---~~~li~~~~~~g~~~~A~~l~~~m~~~g~~pd~--~t~~~ll~a~~~ 550 (809)
...+.+.|++++|.+.|+.+.. |+. .. .-.++.+|.+.+++++|...|++.++. .|+. .-+...+.+.+.
T Consensus 39 A~~~~~~g~y~~Ai~~f~~l~~~yP~s~~a~~a~l~la~ayy~~~~y~~A~~~~e~fi~~--~P~~~~~~~a~Y~~g~~~ 116 (243)
T PRK10866 39 AQQKLQDGNWKQAITQLEALDNRYPFGPYSQQVQLDLIYAYYKNADLPLAQAAIDRFIRL--NPTHPNIDYVLYMRGLTN 116 (243)
T ss_pred HHHHHHCCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHh--CcCCCchHHHHHHHHHhh
Confidence 3345567888888888888763 222 11 123456677888888888888888874 3433 234344443331
Q ss_pred --cC---------------C---HHHHHHHHHHhHHhhCCCCChHHHHHHHHHHhhcCCHHHHHHHHHhCcCCCCHHHHH
Q 003584 551 --AG---------------L---AENARWYFESMDKVYGIKPGPDHYACMIDLLGRSGKLIEAKALLDQMVGEPDATVWK 610 (809)
Q Consensus 551 --~g---------------~---~~~a~~~~~~m~~~~~~~p~~~~~~~li~~~~~~g~~~eA~~~~~~m~~~p~~~~~~ 610 (809)
.+ + ..+|.+.|+.+.+ -|-...-..+|...+..+...--..-+
T Consensus 117 ~~~~~~~~~~~~~~~~~~rD~~~~~~A~~~~~~li~----------------~yP~S~ya~~A~~rl~~l~~~la~~e~- 179 (243)
T PRK10866 117 MALDDSALQGFFGVDRSDRDPQHARAAFRDFSKLVR----------------GYPNSQYTTDATKRLVFLKDRLAKYEL- 179 (243)
T ss_pred hhcchhhhhhccCCCccccCHHHHHHHHHHHHHHHH----------------HCcCChhHHHHHHHHHHHHHHHHHHHH-
Confidence 11 1 1233344444433 333333344554444333211000111
Q ss_pred HHHHHHHhcCChhHHHHHHHHHhccCCCCC---ccHHhHhhhhhhcCChhHHHHHHHHHH
Q 003584 611 ALLSACRVHGDLELGERAANNLFELEPMNA---MPYVQLSNMYSTAGKWEDAARVRKLMK 667 (809)
Q Consensus 611 ~ll~a~~~~g~~~~A~~~~~~~~~~~p~~~---~~~~~l~~~~~~~g~~~~A~~~~~~m~ 667 (809)
....-|.+.|.+.-|..-++.+++.-|+.+ .+...+..+|...|..++|..+.....
T Consensus 180 ~ia~~Y~~~~~y~AA~~r~~~v~~~Yp~t~~~~eal~~l~~ay~~lg~~~~a~~~~~~l~ 239 (243)
T PRK10866 180 SVAEYYTKRGAYVAVVNRVEQMLRDYPDTQATRDALPLMENAYRQLQLNAQADKVAKIIA 239 (243)
T ss_pred HHHHHHHHcCchHHHHHHHHHHHHHCCCCchHHHHHHHHHHHHHHcCChHHHHHHHHHHh
Confidence 334557888999999999999999887654 456788899999999999998877654
No 188
>PF12688 TPR_5: Tetratrico peptide repeat
Probab=96.85 E-value=0.03 Score=48.12 Aligned_cols=93 Identities=18% Similarity=0.142 Sum_probs=69.4
Q ss_pred HHHHHHhcCChHHHHHHHHHHHHCCCCCCH--HHHHHHHHHHHccCCHHHHHHHHHHhHHhhCCCC-ChHHHHHHHHHHh
Q 003584 509 LIMGCAQNGKGKEALQFYDQMLARGTKPDY--ITFVGLLFACSHAGLAENARWYFESMDKVYGIKP-GPDHYACMIDLLG 585 (809)
Q Consensus 509 li~~~~~~g~~~~A~~l~~~m~~~g~~pd~--~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p-~~~~~~~li~~~~ 585 (809)
+..++-..|+.++|+.+|++....|+.... ..+..+.+++...|++++|..+++.....+.-.+ +......+..++.
T Consensus 7 ~A~a~d~~G~~~~Ai~~Y~~Al~~gL~~~~~~~a~i~lastlr~LG~~deA~~~L~~~~~~~p~~~~~~~l~~f~Al~L~ 86 (120)
T PF12688_consen 7 LAWAHDSLGREEEAIPLYRRALAAGLSGADRRRALIQLASTLRNLGRYDEALALLEEALEEFPDDELNAALRVFLALALY 86 (120)
T ss_pred HHHHHHhcCCHHHHHHHHHHHHHcCCCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCccccHHHHHHHHHHHH
Confidence 445677889999999999999998877653 4677888899999999999999998876532211 2223333456788
Q ss_pred hcCCHHHHHHHHHhCc
Q 003584 586 RSGKLIEAKALLDQMV 601 (809)
Q Consensus 586 ~~g~~~eA~~~~~~m~ 601 (809)
..|+.+||++.+-...
T Consensus 87 ~~gr~~eAl~~~l~~l 102 (120)
T PF12688_consen 87 NLGRPKEALEWLLEAL 102 (120)
T ss_pred HCCCHHHHHHHHHHHH
Confidence 8899999998875544
No 189
>PF12895 Apc3: Anaphase-promoting complex, cyclosome, subunit 3; PDB: 3KAE_D 3Q4A_B 2C2L_D 3Q47_B 3Q49_B 2XPI_A 3ULQ_A.
Probab=96.81 E-value=0.0038 Score=50.36 Aligned_cols=80 Identities=21% Similarity=0.308 Sum_probs=45.6
Q ss_pred cCChHHHHHHHHHHHHCCC-CCCHHHHHHHHHHHHccCCHHHHHHHHHHhHHhhCCCCCh-HHHHHHHHHHhhcCCHHHH
Q 003584 516 NGKGKEALQFYDQMLARGT-KPDYITFVGLLFACSHAGLAENARWYFESMDKVYGIKPGP-DHYACMIDLLGRSGKLIEA 593 (809)
Q Consensus 516 ~g~~~~A~~l~~~m~~~g~-~pd~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~~-~~~~~li~~~~~~g~~~eA 593 (809)
.|++++|+.+|+++.+... .|+...+..+..++.+.|++++|..+++.. ...|.. .....+...+.+.|++++|
T Consensus 2 ~~~y~~Ai~~~~k~~~~~~~~~~~~~~~~la~~~~~~~~y~~A~~~~~~~----~~~~~~~~~~~l~a~~~~~l~~y~eA 77 (84)
T PF12895_consen 2 QGNYENAIKYYEKLLELDPTNPNSAYLYNLAQCYFQQGKYEEAIELLQKL----KLDPSNPDIHYLLARCLLKLGKYEEA 77 (84)
T ss_dssp TT-HHHHHHHHHHHHHHHCGTHHHHHHHHHHHHHHHTTHHHHHHHHHHCH----THHHCHHHHHHHHHHHHHHTT-HHHH
T ss_pred CccHHHHHHHHHHHHHHCCCChhHHHHHHHHHHHHHCCCHHHHHHHHHHh----CCCCCCHHHHHHHHHHHHHhCCHHHH
Confidence 5677777777777776422 123334445667777777777777777651 222222 3333445666677777777
Q ss_pred HHHHHh
Q 003584 594 KALLDQ 599 (809)
Q Consensus 594 ~~~~~~ 599 (809)
++.+++
T Consensus 78 i~~l~~ 83 (84)
T PF12895_consen 78 IKALEK 83 (84)
T ss_dssp HHHHHH
T ss_pred HHHHhc
Confidence 766654
No 190
>PLN03098 LPA1 LOW PSII ACCUMULATION1; Provisional
Probab=96.80 E-value=0.0038 Score=65.24 Aligned_cols=65 Identities=14% Similarity=-0.003 Sum_probs=41.5
Q ss_pred CHHHHHHHHHHHHhcCChhHHHHHHHHHhccCCCCCcc---HHhHhhhhhhcCChhHHHHHHHHHHhC
Q 003584 605 DATVWKALLSACRVHGDLELGERAANNLFELEPMNAMP---YVQLSNMYSTAGKWEDAARVRKLMKSR 669 (809)
Q Consensus 605 ~~~~~~~ll~a~~~~g~~~~A~~~~~~~~~~~p~~~~~---~~~l~~~~~~~g~~~~A~~~~~~m~~~ 669 (809)
+...|+.+..+|...|++++|+..++++++++|++..+ |..++.+|...|+.++|...+++..+.
T Consensus 74 ~a~a~~NLG~AL~~lGryeEAIa~f~rALeL~Pd~aeA~~A~yNLAcaya~LGr~dEAla~LrrALel 141 (453)
T PLN03098 74 TAEDAVNLGLSLFSKGRVKDALAQFETALELNPNPDEAQAAYYNKACCHAYREEGKKAADCLRTALRD 141 (453)
T ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Confidence 34466666666666666666666666666666666533 666666666666666666666666553
No 191
>PF10037 MRP-S27: Mitochondrial 28S ribosomal protein S27; InterPro: IPR019266 Ribosomes are the particles that catalyse mRNA-directed protein synthesis in all organisms. The codons of the mRNA are exposed on the ribosome to allow tRNA binding. This leads to the incorporation of amino acids into the growing polypeptide chain in accordance with the genetic information. Incoming amino acid monomers enter the ribosomal A site in the form of aminoacyl-tRNAs complexed with elongation factor Tu (EF-Tu) and GTP. The growing polypeptide chain, situated in the P site as peptidyl-tRNA, is then transferred to aminoacyl-tRNA and the new peptidyl-tRNA, extended by one residue, is translocated to the P site with the aid the elongation factor G (EF-G) and GTP as the deacylated tRNA is released from the ribosome through one or more exit sites [, ]. About 2/3 of the mass of the ribosome consists of RNA and 1/3 of protein. The proteins are named in accordance with the subunit of the ribosome which they belong to - the small (S1 to S31) and the large (L1 to L44). Usually they decorate the rRNA cores of the subunits. Many ribosomal proteins, particularly those of the large subunit, are composed of a globular, surfaced-exposed domain with long finger-like projections that extend into the rRNA core to stabilise its structure. Most of the proteins interact with multiple RNA elements, often from different domains. In the large subunit, about 1/3 of the 23S rRNA nucleotides are at least in van der Waal's contact with protein, and L22 interacts with all six domains of the 23S rRNA. Proteins S4 and S7, which initiate assembly of the 16S rRNA, are located at junctions of five and four RNA helices, respectively. In this way proteins serve to organise and stabilise the rRNA tertiary structure. While the crucial activities of decoding and peptide transfer are RNA based, proteins play an active role in functions that may have evolved to streamline the process of protein synthesis. In addition to their function in the ribosome, many ribosomal proteins have some function 'outside' the ribosome [, ]. This entry represents a family of small ribosomal proteins possessing one of three conserved sequence blocks found in proteins that stimulate the dissociation of guanine nucleotides from G-proteins. This leaves open the possibility that they may be functional partners of GTP-binding ribosomal proteins [].
Probab=96.78 E-value=0.014 Score=61.84 Aligned_cols=114 Identities=12% Similarity=0.052 Sum_probs=82.9
Q ss_pred HHHHHHHhhhcCCChhHHHHHhhhCCCCC-----CcccHHHHHHHHhhCCChHHHHHHHHHHHHCCCCCCcchHHHHHHH
Q 003584 170 VVTGLVDMYAKCKCIFEAEYLFKMFPDGK-----NHVAWTTMITGYSQNGYGFKAIECFRDMRVEGVESNQFTFPSILTA 244 (809)
Q Consensus 170 ~~~~li~~y~~~g~~~~A~~~f~~~~~~~-----~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~~ 244 (809)
....+++......+++++..++-+...++ -..+..++|+.|.+.|..++++++++.=...|+-||.+|++.+++.
T Consensus 68 dld~fvn~~~~~~~~d~~~~~L~k~R~s~~~~~~~~~t~ha~vR~~l~~~~~~~~l~~L~n~~~yGiF~D~~s~n~Lmd~ 147 (429)
T PF10037_consen 68 DLDIFVNNVESKDDLDEVEDVLYKFRHSPNCSYLLPSTHHALVRQCLELGAEDELLELLKNRLQYGIFPDNFSFNLLMDH 147 (429)
T ss_pred HHHHHHhhcCCHhHHHHHHHHHHHHHcCcccccccCccHHHHHHHHHhcCCHHHHHHHHhChhhcccCCChhhHHHHHHH
Confidence 33344444444555666666655444322 1235568889999999999999998888888999999999999999
Q ss_pred HhccCChHHHHHHHHHHHHhCCCCchhHHHHHHHHHHhC
Q 003584 245 CAAVSARDFGAQVHGCILSSGFEANVYVQSALIDMYAKC 283 (809)
Q Consensus 245 ~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~Li~~y~~~ 283 (809)
+.+.|++..|.++...|...+...+..|+..-+..+.+.
T Consensus 148 fl~~~~~~~A~~V~~~~~lQe~~~~~~t~~L~l~~~~~~ 186 (429)
T PF10037_consen 148 FLKKGNYKSAAKVATEMMLQEEFDNPSTQALALYSCYKY 186 (429)
T ss_pred HhhcccHHHHHHHHHHHHHhhccCCchHHHHHHHHHHHh
Confidence 999999999999888888887767777766656555555
No 192
>KOG1538 consensus Uncharacterized conserved protein WDR10, contains WD40 repeats [General function prediction only]
Probab=96.75 E-value=0.54 Score=50.89 Aligned_cols=260 Identities=15% Similarity=0.112 Sum_probs=130.1
Q ss_pred ccHHHHHHHHhhCCChHHHHHHH---------HHHHHCCCCCCcchHHHHHHHHhccCChHHHHHH--HHHHHHhCCCCc
Q 003584 201 VAWTTMITGYSQNGYGFKAIECF---------RDMRVEGVESNQFTFPSILTACAAVSARDFGAQV--HGCILSSGFEAN 269 (809)
Q Consensus 201 ~~~~~li~~~~~~g~~~~A~~l~---------~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~--~~~~~~~g~~~~ 269 (809)
+.+.+-+-.|...|.+++|.++- +.+-.+ ..+.-.|++.=++|.+.++..--+-+ ++.+.++|-.|+
T Consensus 557 vp~~~~m~q~Ieag~f~ea~~iaclgVv~~DW~~LA~~--ALeAL~f~~ARkAY~rVRdl~~L~li~EL~~~k~rge~P~ 634 (1081)
T KOG1538|consen 557 VPQSAPMYQYIERGLFKEAYQIACLGVTDTDWRELAME--ALEALDFETARKAYIRVRDLRYLELISELEERKKRGETPN 634 (1081)
T ss_pred ccccccchhhhhccchhhhhcccccceecchHHHHHHH--HHhhhhhHHHHHHHHHHhccHHHHHHHHHHHHHhcCCCch
Confidence 44555556677777777776542 111110 12333455555666666665443332 445667776676
Q ss_pred hhHHHHHHHHHHhCCChHHHHHHHhccCCCCeeeHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCcccHHHHHHHhhcC
Q 003584 270 VYVQSALIDMYAKCGDLDSARRLLEYSEIDNEVSWNSMIVGFARQGFHKEALSLFKKMHARDIKIDDFTYPSVLNCFASN 349 (809)
Q Consensus 270 ~~~~~~Li~~y~~~g~~~~A~~~f~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~ 349 (809)
... +.+.++-.|++.+|.++|.+ +|.-..|+++|.+|+-- -...-+...
T Consensus 635 ~iL---lA~~~Ay~gKF~EAAklFk~------------------~G~enRAlEmyTDlRMF----------D~aQE~~~~ 683 (1081)
T KOG1538|consen 635 DLL---LADVFAYQGKFHEAAKLFKR------------------SGHENRALEMYTDLRMF----------DYAQEFLGS 683 (1081)
T ss_pred HHH---HHHHHHhhhhHHHHHHHHHH------------------cCchhhHHHHHHHHHHH----------HHHHHHhhc
Confidence 643 44566677889999988863 56666677777666421 112223333
Q ss_pred CChHHHHHHHHHHHHhccCCchHHHHHHHHHHHhcCCHHHHHHHHhhcCCCCHhHHHHHHHHHHhcCCHHHHHHHHHHHh
Q 003584 350 IDLNNAKSVHSLIVKTGFEGYKFVNNALIDMYAKQGNLDCAFMVFNLMQDKDVISWTSLITGCAYHGSYEEALKYFSDMR 429 (809)
Q Consensus 350 ~~~~~a~~i~~~~~~~g~~~~~~~~~~li~~y~~~g~~~~A~~~f~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~ 429 (809)
|+.++-+.+.+.-.+.-. +..--.+-..++...|+.++|..+. ..+|-.+-++++-+++.
T Consensus 684 g~~~eKKmL~RKRA~WAr--~~kePkaAAEmLiSaGe~~KAi~i~------------------~d~gW~d~lidI~rkld 743 (1081)
T KOG1538|consen 684 GDPKEKKMLIRKRADWAR--NIKEPKAAAEMLISAGEHVKAIEIC------------------GDHGWVDMLIDIARKLD 743 (1081)
T ss_pred CChHHHHHHHHHHHHHhh--hcCCcHHHHHHhhcccchhhhhhhh------------------hcccHHHHHHHHHhhcc
Confidence 333333333222111100 0000022344455556666554432 22333333333333332
Q ss_pred hcCCccCHhHHHHHHHHHhcccchhHHHHHHHHHHHhCCCCChhHHhHHHHHHHhcCCHHHHHHHHHhcCCCCeeechHH
Q 003584 430 ISGICPDHVVVSSILSACAELTVLEFGQQVHAVFLKSGGCSSLSVDNSLVLVYAKCGCINDANRVFDSMHTRDVITWTAL 509 (809)
Q Consensus 430 ~~g~~p~~~t~~~ll~a~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~y~k~g~~~~A~~~~~~~~~~~~~~~~~l 509 (809)
. .+..+...+..-+-+...+..|.++|..+-.. .+++++....+++.+|..+-++.++--...|---
T Consensus 744 ~----~ere~l~~~a~ylk~l~~~gLAaeIF~k~gD~---------ksiVqlHve~~~W~eAFalAe~hPe~~~dVy~py 810 (1081)
T KOG1538|consen 744 K----AEREPLLLCATYLKKLDSPGLAAEIFLKMGDL---------KSLVQLHVETQRWDEAFALAEKHPEFKDDVYMPY 810 (1081)
T ss_pred h----hhhhHHHHHHHHHhhccccchHHHHHHHhccH---------HHHhhheeecccchHhHhhhhhCccccccccchH
Confidence 1 12233333333344455556666666555332 3567788888899999988888875322223333
Q ss_pred HHHHHhcCChHHHHHHH
Q 003584 510 IMGCAQNGKGKEALQFY 526 (809)
Q Consensus 510 i~~~~~~g~~~~A~~l~ 526 (809)
..-++...+++||.+.|
T Consensus 811 aqwLAE~DrFeEAqkAf 827 (1081)
T KOG1538|consen 811 AQWLAENDRFEEAQKAF 827 (1081)
T ss_pred HHHhhhhhhHHHHHHHH
Confidence 33344455555554443
No 193
>PF08579 RPM2: Mitochondrial ribonuclease P subunit (RPM2); InterPro: IPR013888 Ribonuclease P (RNase P) generates mature tRNA molecules by cleaving their 5' ends. Rpm2 is a protein subunit of the yeast mitochondrial RNase P. It has the ability to act as a transcriptional activator in the nucleus, where it plays a role in defining the steady-state levels of mRNAs for some nucleus-encoded mitochondrial components. Rpm2p is also involved in maturation of Rpm1 and in translation of mitochondrial mRNAs [, , ].
Probab=96.68 E-value=0.03 Score=46.36 Aligned_cols=79 Identities=15% Similarity=0.202 Sum_probs=65.1
Q ss_pred hHHHHHHHhcCChHHHHHHHHHHHHCCC-CCCHHHHHHHHHHHHccC--------CHHHHHHHHHHhHHhhCCCCChHHH
Q 003584 507 TALIMGCAQNGKGKEALQFYDQMLARGT-KPDYITFVGLLFACSHAG--------LAENARWYFESMDKVYGIKPGPDHY 577 (809)
Q Consensus 507 ~~li~~~~~~g~~~~A~~l~~~m~~~g~-~pd~~t~~~ll~a~~~~g--------~~~~a~~~~~~m~~~~~~~p~~~~~ 577 (809)
...|..+...|++.....+|+.+++.|+ .|+..+|+.++.+..+.. .+-+...+|+.|... +++|+.++|
T Consensus 29 i~~I~~~~~~~d~N~I~~lYqslkRN~i~lPsv~~Yn~VL~Si~~R~lD~~~ie~kl~~LLtvYqDiL~~-~lKP~~etY 107 (120)
T PF08579_consen 29 IDNINSCFENEDYNIINPLYQSLKRNGITLPSVELYNKVLKSIAKRELDSEDIENKLTNLLTVYQDILSN-KLKPNDETY 107 (120)
T ss_pred HHHHHHHHhhcchHHHHHHHHHHHhcCCCCCcHHHHHHHHHHHHHccccchhHHHHHHHHHHHHHHHHHh-ccCCcHHHH
Confidence 3456666677999999999999999999 899999999999876543 345677889999876 899999999
Q ss_pred HHHHHHHhh
Q 003584 578 ACMIDLLGR 586 (809)
Q Consensus 578 ~~li~~~~~ 586 (809)
+.++..+.+
T Consensus 108 nivl~~Llk 116 (120)
T PF08579_consen 108 NIVLGSLLK 116 (120)
T ss_pred HHHHHHHHH
Confidence 999887754
No 194
>COG4700 Uncharacterized protein conserved in bacteria containing a divergent form of TPR repeats [Function unknown]
Probab=96.68 E-value=0.17 Score=45.90 Aligned_cols=132 Identities=11% Similarity=0.044 Sum_probs=92.5
Q ss_pred CCCCHHHHHHHHHHHHccCCHHHHHHHHHHhHHhhCCCCChHHHHHHHHHHhhcCCHHHHHHHHHhCcC-CC---CHHHH
Q 003584 534 TKPDYITFVGLLFACSHAGLAENARWYFESMDKVYGIKPGPDHYACMIDLLGRSGKLIEAKALLDQMVG-EP---DATVW 609 (809)
Q Consensus 534 ~~pd~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~~~~~~~li~~~~~~g~~~eA~~~~~~m~~-~p---~~~~~ 609 (809)
+.|....-..|..+....|+..||...|++...- -+.-|....-.+..+....+++.+|...++.... .| .+..-
T Consensus 85 ~ApTvqnr~rLa~al~elGr~~EA~~hy~qalsG-~fA~d~a~lLglA~Aqfa~~~~A~a~~tLe~l~e~~pa~r~pd~~ 163 (251)
T COG4700 85 IAPTVQNRYRLANALAELGRYHEAVPHYQQALSG-IFAHDAAMLLGLAQAQFAIQEFAAAQQTLEDLMEYNPAFRSPDGH 163 (251)
T ss_pred hchhHHHHHHHHHHHHHhhhhhhhHHHHHHHhcc-ccCCCHHHHHHHHHHHHhhccHHHHHHHHHHHhhcCCccCCCCch
Confidence 3566666667777888888888888888776542 2334556666677777777888888877776553 11 22233
Q ss_pred HHHHHHHHhcCChhHHHHHHHHHhccCCCCCccHHhHhhhhhhcCChhHHHHHHHHHH
Q 003584 610 KALLSACRVHGDLELGERAANNLFELEPMNAMPYVQLSNMYSTAGKWEDAARVRKLMK 667 (809)
Q Consensus 610 ~~ll~a~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~ 667 (809)
-.+...+...|....|+..|+.++.-.|+ +..-...+..+.++|+.++|..-+....
T Consensus 164 Ll~aR~laa~g~~a~Aesafe~a~~~ypg-~~ar~~Y~e~La~qgr~~ea~aq~~~v~ 220 (251)
T COG4700 164 LLFARTLAAQGKYADAESAFEVAISYYPG-PQARIYYAEMLAKQGRLREANAQYVAVV 220 (251)
T ss_pred HHHHHHHHhcCCchhHHHHHHHHHHhCCC-HHHHHHHHHHHHHhcchhHHHHHHHHHH
Confidence 45678888899999999999999888874 5555666778889998888766555443
No 195
>KOG2041 consensus WD40 repeat protein [General function prediction only]
Probab=96.64 E-value=0.078 Score=57.47 Aligned_cols=31 Identities=16% Similarity=-0.077 Sum_probs=18.5
Q ss_pred CCchHHHHHHHHHHHhcCCHHHHHHHHhhcC
Q 003584 368 EGYKFVNNALIDMYAKQGNLDCAFMVFNLMQ 398 (809)
Q Consensus 368 ~~~~~~~~~li~~y~~~g~~~~A~~~f~~~~ 398 (809)
.|.+..|..|...-.+.-.++.|+..|-+..
T Consensus 689 nPHprLWrllAe~Al~Kl~l~tAE~AFVrc~ 719 (1189)
T KOG2041|consen 689 NPHPRLWRLLAEYALFKLALDTAEHAFVRCG 719 (1189)
T ss_pred CCchHHHHHHHHHHHHHHhhhhHhhhhhhhc
Confidence 4666666666665555555666666555443
No 196
>PF13428 TPR_14: Tetratricopeptide repeat
Probab=96.63 E-value=0.0029 Score=43.49 Aligned_cols=42 Identities=26% Similarity=0.423 Sum_probs=37.6
Q ss_pred HHHHHHHHHHHhcCChhHHHHHHHHHhccCCCCCccHHhHhh
Q 003584 607 TVWKALLSACRVHGDLELGERAANNLFELEPMNAMPYVQLSN 648 (809)
Q Consensus 607 ~~~~~ll~a~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~ 648 (809)
.+|..+..+|...|+.++|+++++++++.+|+|+..+..|+.
T Consensus 2 ~~~~~la~~~~~~G~~~~A~~~~~~~l~~~P~~~~a~~~La~ 43 (44)
T PF13428_consen 2 AAWLALARAYRRLGQPDEAERLLRRALALDPDDPEAWRALAQ 43 (44)
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHHCcCCHHHHHHhhh
Confidence 468889999999999999999999999999999988887764
No 197
>PF06239 ECSIT: Evolutionarily conserved signalling intermediate in Toll pathway; InterPro: IPR010418 Activation of NF-kappaB as a consequence of signalling through the Toll and IL-1 receptors is a major element of innate immune responses. ECSIT plays an important role in signalling to NF-kappaB, functioning as the intermediate in the signalling pathways between TRAF-6 and MEKK-1 [].
Probab=96.62 E-value=0.066 Score=50.22 Aligned_cols=113 Identities=19% Similarity=0.103 Sum_probs=68.1
Q ss_pred CHhHHHHHHHHHhc-----ccchhHHHHHHHHHHHhCCCCChhHHhHHHHHHHhcCCHHHHHHHHHhcCCCCeeechHHH
Q 003584 436 DHVVVSSILSACAE-----LTVLEFGQQVHAVFLKSGGCSSLSVDNSLVLVYAKCGCINDANRVFDSMHTRDVITWTALI 510 (809)
Q Consensus 436 ~~~t~~~ll~a~~~-----~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~y~k~g~~~~A~~~~~~~~~~~~~~~~~li 510 (809)
|..+|..++..+.+ .|.++-....+..|.+.|+..|..+|+.|++.+=| |.+- =..++
T Consensus 46 ~K~~F~~~V~~f~~~~~~RRGHVeFI~aAL~~M~efgv~kDL~~Y~~LLDvFPK-g~fv----------------p~n~f 108 (228)
T PF06239_consen 46 DKATFLEAVDIFKQRDVRRRGHVEFIYAALKKMDEFGVEKDLEVYKALLDVFPK-GKFV----------------PRNFF 108 (228)
T ss_pred cHHHHHHHHHHHHhcCCCCcChHHHHHHHHHHHHHcCCcccHHHHHHHHHhCCC-CCcc----------------cccHH
Confidence 44444444444432 34555555566667777777777777777776654 2221 11112
Q ss_pred HHHH--hcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCCH-HHHHHHHHHhH
Q 003584 511 MGCA--QNGKGKEALQFYDQMLARGTKPDYITFVGLLFACSHAGLA-ENARWYFESMD 565 (809)
Q Consensus 511 ~~~~--~~g~~~~A~~l~~~m~~~g~~pd~~t~~~ll~a~~~~g~~-~~a~~~~~~m~ 565 (809)
.+-. ...+-+-|++++++|...|+-||..|+..|++.+.+.+.. .+..++.-.|.
T Consensus 109 Q~~F~hyp~Qq~c~i~lL~qME~~gV~Pd~Et~~~ll~iFG~~s~p~~K~~rmmYWmp 166 (228)
T PF06239_consen 109 QAEFMHYPRQQECAIDLLEQMENNGVMPDKETEQMLLNIFGRKSHPMKKYRRMMYWMP 166 (228)
T ss_pred HHHhccCcHHHHHHHHHHHHHHHcCCCCcHHHHHHHHHHhccccHHHHHHHHHHHHHH
Confidence 2111 1234567899999999999999999999999988776653 33334433443
No 198
>KOG1130 consensus Predicted G-alpha GTPase interaction protein, contains GoLoco domain [Signal transduction mechanisms]
Probab=96.60 E-value=0.0082 Score=60.72 Aligned_cols=129 Identities=11% Similarity=0.040 Sum_probs=92.3
Q ss_pred HHHHHHHHHHccCCHHHHHHHHHH---hHHhhCCCC-ChHHHHHHHHHHhhcCCHHHHHHHHHhCcC--------CCCHH
Q 003584 540 TFVGLLFACSHAGLAENARWYFES---MDKVYGIKP-GPDHYACMIDLLGRSGKLIEAKALLDQMVG--------EPDAT 607 (809)
Q Consensus 540 t~~~ll~a~~~~g~~~~a~~~~~~---m~~~~~~~p-~~~~~~~li~~~~~~g~~~eA~~~~~~m~~--------~p~~~ 607 (809)
.|..|.+.|.-.|+++.|+..++. +.+.||-.. ....++.|.+.+.-.|+++.|.+.++.... .-.+.
T Consensus 197 a~GnLGNTyYlLGdf~~ai~~H~~RL~ia~efGDrAaeRRA~sNlgN~hiflg~fe~A~ehYK~tl~LAielg~r~vEAQ 276 (639)
T KOG1130|consen 197 AYGNLGNTYYLLGDFDQAIHFHKLRLEIAQEFGDRAAERRAHSNLGNCHIFLGNFELAIEHYKLTLNLAIELGNRTVEAQ 276 (639)
T ss_pred hhcccCceeeeeccHHHHHHHHHHHHHHHHHhhhHHHHHHhhcccchhhhhhcccHhHHHHHHHHHHHHHHhcchhHHHH
Confidence 455666666677889998887753 233344333 235677888888889999999988876441 13445
Q ss_pred HHHHHHHHHHhcCChhHHHHHHHHHhcc----C--CCCCccHHhHhhhhhhcCChhHHHHHHHHHHh
Q 003584 608 VWKALLSACRVHGDLELGERAANNLFEL----E--PMNAMPYVQLSNMYSTAGKWEDAARVRKLMKS 668 (809)
Q Consensus 608 ~~~~ll~a~~~~g~~~~A~~~~~~~~~~----~--p~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~ 668 (809)
+.-+|.++|....+++.|+..+.+-+.+ + -....++..|+++|...|..+.|..+.+.-++
T Consensus 277 scYSLgNtytll~e~~kAI~Yh~rHLaIAqeL~DriGe~RacwSLgna~~alg~h~kAl~fae~hl~ 343 (639)
T KOG1130|consen 277 SCYSLGNTYTLLKEVQKAITYHQRHLAIAQELEDRIGELRACWSLGNAFNALGEHRKALYFAELHLR 343 (639)
T ss_pred HHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHhhhhHHHHHHHHHHHHH
Confidence 6778889998888999999888765443 2 23455788999999999999999888776543
No 199
>PRK15363 pathogenicity island 2 chaperone protein SscA; Provisional
Probab=96.60 E-value=0.041 Score=49.18 Aligned_cols=92 Identities=12% Similarity=0.043 Sum_probs=67.2
Q ss_pred HHHHHHHhcCCHHHHHHHHHhcC--CC-CeeechHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCC
Q 003584 477 SLVLVYAKCGCINDANRVFDSMH--TR-DVITWTALIMGCAQNGKGKEALQFYDQMLARGTKPDYITFVGLLFACSHAGL 553 (809)
Q Consensus 477 ~li~~y~k~g~~~~A~~~~~~~~--~~-~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~pd~~t~~~ll~a~~~~g~ 553 (809)
++...+...|++++|..+|+-+. .| +..-|-.|...+...|++++|+..|....... +-|..++-.+..++...|+
T Consensus 40 ~~A~~ly~~G~l~~A~~~f~~L~~~Dp~~~~y~~gLG~~~Q~~g~~~~AI~aY~~A~~L~-~ddp~~~~~ag~c~L~lG~ 118 (157)
T PRK15363 40 RYAMQLMEVKEFAGAARLFQLLTIYDAWSFDYWFRLGECCQAQKHWGEAIYAYGRAAQIK-IDAPQAPWAAAECYLACDN 118 (157)
T ss_pred HHHHHHHHCCCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcC-CCCchHHHHHHHHHHHcCC
Confidence 34444567788888888888765 33 45667778888888888888888888888753 2344577778888888888
Q ss_pred HHHHHHHHHHhHHhhC
Q 003584 554 AENARWYFESMDKVYG 569 (809)
Q Consensus 554 ~~~a~~~~~~m~~~~~ 569 (809)
.+.|++.|+......+
T Consensus 119 ~~~A~~aF~~Ai~~~~ 134 (157)
T PRK15363 119 VCYAIKALKAVVRICG 134 (157)
T ss_pred HHHHHHHHHHHHHHhc
Confidence 8888888887765533
No 200
>PF12688 TPR_5: Tetratrico peptide repeat
Probab=96.56 E-value=0.013 Score=50.34 Aligned_cols=86 Identities=20% Similarity=0.060 Sum_probs=56.5
Q ss_pred HHHHhhcCCHHHHHHHHHhCcCC----CC-HHHHHHHHHHHHhcCChhHHHHHHHHHhccCCC---CCccHHhHhhhhhh
Q 003584 581 IDLLGRSGKLIEAKALLDQMVGE----PD-ATVWKALLSACRVHGDLELGERAANNLFELEPM---NAMPYVQLSNMYST 652 (809)
Q Consensus 581 i~~~~~~g~~~eA~~~~~~m~~~----p~-~~~~~~ll~a~~~~g~~~~A~~~~~~~~~~~p~---~~~~~~~l~~~~~~ 652 (809)
..++...|+.++|..+|++.... ++ ...+-.+.+.++..|+.++|+.++++.++..|+ +......++-++..
T Consensus 8 A~a~d~~G~~~~Ai~~Y~~Al~~gL~~~~~~~a~i~lastlr~LG~~deA~~~L~~~~~~~p~~~~~~~l~~f~Al~L~~ 87 (120)
T PF12688_consen 8 AWAHDSLGREEEAIPLYRRALAAGLSGADRRRALIQLASTLRNLGRYDEALALLEEALEEFPDDELNAALRVFLALALYN 87 (120)
T ss_pred HHHHHhcCCHHHHHHHHHHHHHcCCCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCccccHHHHHHHHHHHHH
Confidence 34555666677777776665531 11 225556777777788888888888777776666 55555666677777
Q ss_pred cCChhHHHHHHHHH
Q 003584 653 AGKWEDAARVRKLM 666 (809)
Q Consensus 653 ~g~~~~A~~~~~~m 666 (809)
.|++++|.+.+-..
T Consensus 88 ~gr~~eAl~~~l~~ 101 (120)
T PF12688_consen 88 LGRPKEALEWLLEA 101 (120)
T ss_pred CCCHHHHHHHHHHH
Confidence 78888877766543
No 201
>COG4700 Uncharacterized protein conserved in bacteria containing a divergent form of TPR repeats [Function unknown]
Probab=96.51 E-value=0.058 Score=48.79 Aligned_cols=105 Identities=18% Similarity=0.228 Sum_probs=92.5
Q ss_pred HHhhCCCCChHHHHHHHHHHhhcCCHHHHHHHHHhCcC---CCCHHHHHHHHHHHHhcCChhHHHHHHHHHhccCCC--C
Q 003584 565 DKVYGIKPGPDHYACMIDLLGRSGKLIEAKALLDQMVG---EPDATVWKALLSACRVHGDLELGERAANNLFELEPM--N 639 (809)
Q Consensus 565 ~~~~~~~p~~~~~~~li~~~~~~g~~~eA~~~~~~m~~---~p~~~~~~~ll~a~~~~g~~~~A~~~~~~~~~~~p~--~ 639 (809)
.+...+.|++.+-..|...+.+.|+..||...|++... ..|....-.+.++....++...|...++++.+-.|. .
T Consensus 80 ~~~~~~ApTvqnr~rLa~al~elGr~~EA~~hy~qalsG~fA~d~a~lLglA~Aqfa~~~~A~a~~tLe~l~e~~pa~r~ 159 (251)
T COG4700 80 TEELAIAPTVQNRYRLANALAELGRYHEAVPHYQQALSGIFAHDAAMLLGLAQAQFAIQEFAAAQQTLEDLMEYNPAFRS 159 (251)
T ss_pred HHHHhhchhHHHHHHHHHHHHHhhhhhhhHHHHHHHhccccCCCHHHHHHHHHHHHhhccHHHHHHHHHHHhhcCCccCC
Confidence 34446778998888999999999999999999998875 368888899999999999999999999999998875 5
Q ss_pred CccHHhHhhhhhhcCChhHHHHHHHHHHhC
Q 003584 640 AMPYVQLSNMYSTAGKWEDAARVRKLMKSR 669 (809)
Q Consensus 640 ~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~ 669 (809)
+.....++..|...|++.+|...|+...+.
T Consensus 160 pd~~Ll~aR~laa~g~~a~Aesafe~a~~~ 189 (251)
T COG4700 160 PDGHLLFARTLAAQGKYADAESAFEVAISY 189 (251)
T ss_pred CCchHHHHHHHHhcCCchhHHHHHHHHHHh
Confidence 667888999999999999999999988765
No 202
>PRK10803 tol-pal system protein YbgF; Provisional
Probab=96.47 E-value=0.014 Score=58.36 Aligned_cols=89 Identities=13% Similarity=0.093 Sum_probs=47.6
Q ss_pred HHHHhhcCCHHHHHHHHHhCcC-CCCH----HHHHHHHHHHHhcCChhHHHHHHHHHhccCCCCC---ccHHhHhhhhhh
Q 003584 581 IDLLGRSGKLIEAKALLDQMVG-EPDA----TVWKALLSACRVHGDLELGERAANNLFELEPMNA---MPYVQLSNMYST 652 (809)
Q Consensus 581 i~~~~~~g~~~eA~~~~~~m~~-~p~~----~~~~~ll~a~~~~g~~~~A~~~~~~~~~~~p~~~---~~~~~l~~~~~~ 652 (809)
++.+.+.|++++|...|+.... -|+. .++--++.+|...|+++.|...|+++++..|+++ .++..++.+|..
T Consensus 150 ~~l~~~~~~y~~Ai~af~~fl~~yP~s~~a~~A~y~LG~~y~~~g~~~~A~~~f~~vv~~yP~s~~~~dAl~klg~~~~~ 229 (263)
T PRK10803 150 IALVQDKSRQDDAIVAFQNFVKKYPDSTYQPNANYWLGQLNYNKGKKDDAAYYFASVVKNYPKSPKAADAMFKVGVIMQD 229 (263)
T ss_pred HHHHHhcCCHHHHHHHHHHHHHHCcCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCCcchhHHHHHHHHHHHH
Confidence 3333444555555555554442 1322 2444455566666666666666666665555432 334445556666
Q ss_pred cCChhHHHHHHHHHHhC
Q 003584 653 AGKWEDAARVRKLMKSR 669 (809)
Q Consensus 653 ~g~~~~A~~~~~~m~~~ 669 (809)
.|++++|.++++...+.
T Consensus 230 ~g~~~~A~~~~~~vi~~ 246 (263)
T PRK10803 230 KGDTAKAKAVYQQVIKK 246 (263)
T ss_pred cCCHHHHHHHHHHHHHH
Confidence 66666666666655543
No 203
>PF03704 BTAD: Bacterial transcriptional activator domain; InterPro: IPR005158 Found in the DNRI/REDD/AFSR family of regulators, this region of AFSR (P25941 from SWISSPROT) along with the C-terminal region is capable of independently directing actinorhodin production. It is important for the formation of secondary metabolites.; PDB: 2FF4_B 2FEZ_A.
Probab=96.47 E-value=0.022 Score=51.62 Aligned_cols=62 Identities=23% Similarity=0.295 Sum_probs=53.6
Q ss_pred HHHHHHHHHHHhcCChhHHHHHHHHHhccCCCCCccHHhHhhhhhhcCChhHHHHHHHHHHh
Q 003584 607 TVWKALLSACRVHGDLELGERAANNLFELEPMNAMPYVQLSNMYSTAGKWEDAARVRKLMKS 668 (809)
Q Consensus 607 ~~~~~ll~a~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~ 668 (809)
.+...++..+...|+.+.|+..+++++..+|-+...|..++.+|...|+..+|.++++++..
T Consensus 63 ~~~~~l~~~~~~~~~~~~a~~~~~~~l~~dP~~E~~~~~lm~~~~~~g~~~~A~~~Y~~~~~ 124 (146)
T PF03704_consen 63 DALERLAEALLEAGDYEEALRLLQRALALDPYDEEAYRLLMRALAAQGRRAEALRVYERYRR 124 (146)
T ss_dssp HHHHHHHHHHHHTT-HHHHHHHHHHHHHHSTT-HHHHHHHHHHHHHTT-HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhccCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHCcCHHHHHHHHHHHHH
Confidence 35666778888999999999999999999999999999999999999999999999998853
No 204
>PF05843 Suf: Suppressor of forked protein (Suf); InterPro: IPR008847 This domain consists of several eukaryotic suppressor of forked (Suf) like proteins. The Drosophila melanogaster suppressor of forked [Su(f)] protein shares homology with the Saccharomyces cerevisiae RNA14 protein and the 77 kDa subunit of Homo sapiens cleavage stimulation factor, which are proteins involved in mRNA 3' end formation. This suggests a role for Su(f) in mRNA 3' end formation in Drosophila. The su(f) gene produces three transcripts; two of them are polyadenylated at the end of the transcription unit, and one is a truncated transcript, polyadenylated in intron 4. It is thought that su(f) plays a role in the regulation of poly(A) site utilisation and the GU-rich sequence is important for this regulation to occur [].; GO: 0006397 mRNA processing, 0005634 nucleus; PDB: 2L9B_B 2OND_B 2OOE_A 4E85_B 4EBA_C 4E6H_A 2UY1_B.
Probab=96.44 E-value=0.055 Score=55.06 Aligned_cols=79 Identities=14% Similarity=0.037 Sum_probs=48.6
Q ss_pred chhHHHHHHHHHHHhCCCCChhHHhHHHHHHHhcCCHHHHHHHHHhcCCC------CeeechHHHHHHHhcCChHHHHHH
Q 003584 452 VLEFGQQVHAVFLKSGGCSSLSVDNSLVLVYAKCGCINDANRVFDSMHTR------DVITWTALIMGCAQNGKGKEALQF 525 (809)
Q Consensus 452 ~~~~a~~~~~~~~~~g~~~~~~~~~~li~~y~k~g~~~~A~~~~~~~~~~------~~~~~~~li~~~~~~g~~~~A~~l 525 (809)
+.+.|..+|+..++. ++.+...+...++.+.+.|+.+.|+.+|++.... -...|...+.--.+.|+.+.+.++
T Consensus 51 d~~~A~~Ife~glk~-f~~~~~~~~~Y~~~l~~~~d~~~aR~lfer~i~~l~~~~~~~~iw~~~i~fE~~~Gdl~~v~~v 129 (280)
T PF05843_consen 51 DPKRARKIFERGLKK-FPSDPDFWLEYLDFLIKLNDINNARALFERAISSLPKEKQSKKIWKKFIEFESKYGDLESVRKV 129 (280)
T ss_dssp -HHHHHHHHHHHHHH-HTT-HHHHHHHHHHHHHTT-HHHHHHHHHHHCCTSSCHHHCHHHHHHHHHHHHHHS-HHHHHHH
T ss_pred CHHHHHHHHHHHHHH-CCCCHHHHHHHHHHHHHhCcHHHHHHHHHHHHHhcCchhHHHHHHHHHHHHHHHcCCHHHHHHH
Confidence 334445555444443 3455666667777777778888888888776631 223677777777777777777777
Q ss_pred HHHHHH
Q 003584 526 YDQMLA 531 (809)
Q Consensus 526 ~~~m~~ 531 (809)
.+++.+
T Consensus 130 ~~R~~~ 135 (280)
T PF05843_consen 130 EKRAEE 135 (280)
T ss_dssp HHHHHH
T ss_pred HHHHHH
Confidence 777776
No 205
>PF10037 MRP-S27: Mitochondrial 28S ribosomal protein S27; InterPro: IPR019266 Ribosomes are the particles that catalyse mRNA-directed protein synthesis in all organisms. The codons of the mRNA are exposed on the ribosome to allow tRNA binding. This leads to the incorporation of amino acids into the growing polypeptide chain in accordance with the genetic information. Incoming amino acid monomers enter the ribosomal A site in the form of aminoacyl-tRNAs complexed with elongation factor Tu (EF-Tu) and GTP. The growing polypeptide chain, situated in the P site as peptidyl-tRNA, is then transferred to aminoacyl-tRNA and the new peptidyl-tRNA, extended by one residue, is translocated to the P site with the aid the elongation factor G (EF-G) and GTP as the deacylated tRNA is released from the ribosome through one or more exit sites [, ]. About 2/3 of the mass of the ribosome consists of RNA and 1/3 of protein. The proteins are named in accordance with the subunit of the ribosome which they belong to - the small (S1 to S31) and the large (L1 to L44). Usually they decorate the rRNA cores of the subunits. Many ribosomal proteins, particularly those of the large subunit, are composed of a globular, surfaced-exposed domain with long finger-like projections that extend into the rRNA core to stabilise its structure. Most of the proteins interact with multiple RNA elements, often from different domains. In the large subunit, about 1/3 of the 23S rRNA nucleotides are at least in van der Waal's contact with protein, and L22 interacts with all six domains of the 23S rRNA. Proteins S4 and S7, which initiate assembly of the 16S rRNA, are located at junctions of five and four RNA helices, respectively. In this way proteins serve to organise and stabilise the rRNA tertiary structure. While the crucial activities of decoding and peptide transfer are RNA based, proteins play an active role in functions that may have evolved to streamline the process of protein synthesis. In addition to their function in the ribosome, many ribosomal proteins have some function 'outside' the ribosome [, ]. This entry represents a family of small ribosomal proteins possessing one of three conserved sequence blocks found in proteins that stimulate the dissociation of guanine nucleotides from G-proteins. This leaves open the possibility that they may be functional partners of GTP-binding ribosomal proteins [].
Probab=96.41 E-value=0.038 Score=58.54 Aligned_cols=72 Identities=19% Similarity=0.242 Sum_probs=33.2
Q ss_pred HHHHHHHhcCCHHHHHHHHhhcCC----CCHhHHHHHHHHHHhcCCHHHHHHHHHHHhhcCCccCHhHHHHHHHHH
Q 003584 376 ALIDMYAKQGNLDCAFMVFNLMQD----KDVISWTSLITGCAYHGSYEEALKYFSDMRISGICPDHVVVSSILSAC 447 (809)
Q Consensus 376 ~li~~y~~~g~~~~A~~~f~~~~~----~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~ 447 (809)
++|..|.+.|..+.+..++..-.. +|..++|.||..+.+.|++..|.++..+|...+...+..|+...+.+|
T Consensus 108 a~vR~~l~~~~~~~~l~~L~n~~~yGiF~D~~s~n~Lmd~fl~~~~~~~A~~V~~~~~lQe~~~~~~t~~L~l~~~ 183 (429)
T PF10037_consen 108 ALVRQCLELGAEDELLELLKNRLQYGIFPDNFSFNLLMDHFLKKGNYKSAAKVATEMMLQEEFDNPSTQALALYSC 183 (429)
T ss_pred HHHHHHHhcCCHHHHHHHHhChhhcccCCChhhHHHHHHHHhhcccHHHHHHHHHHHHHhhccCCchHHHHHHHHH
Confidence 444444444444444444443332 344444444444444455555555554444444444444444444443
No 206
>PRK10866 outer membrane biogenesis protein BamD; Provisional
Probab=96.36 E-value=0.43 Score=47.32 Aligned_cols=70 Identities=10% Similarity=0.041 Sum_probs=43.6
Q ss_pred HHHHHhCCChHHHHHHHhccCCCCeee------HHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCcccHHHHHHHh
Q 003584 277 IDMYAKCGDLDSARRLLEYSEIDNEVS------WNSMIVGFARQGFHKEALSLFKKMHARDIKIDDFTYPSVLNCF 346 (809)
Q Consensus 277 i~~y~~~g~~~~A~~~f~~~~~~~~~~------~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~ 346 (809)
...+.+.|++++|...|+.+....+.+ .-.++.+|.+.+++++|...|++..+..+.-...-+...+.+.
T Consensus 39 A~~~~~~g~y~~Ai~~f~~l~~~yP~s~~a~~a~l~la~ayy~~~~y~~A~~~~e~fi~~~P~~~~~~~a~Y~~g~ 114 (243)
T PRK10866 39 AQQKLQDGNWKQAITQLEALDNRYPFGPYSQQVQLDLIYAYYKNADLPLAQAAIDRFIRLNPTHPNIDYVLYMRGL 114 (243)
T ss_pred HHHHHHCCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCcCCCchHHHHHHHHH
Confidence 344556788888888887765432211 2235567788888888888888887765443344444444443
No 207
>KOG2796 consensus Uncharacterized conserved protein [Function unknown]
Probab=96.35 E-value=0.3 Score=46.96 Aligned_cols=169 Identities=10% Similarity=0.010 Sum_probs=111.4
Q ss_pred HHHHHHHHHhcCCHHHHHHHHhhcCCC--C--------HhHHHHHHHHHHhcCCHHHHHHHHHHHhhcCCccCHhHHHHH
Q 003584 374 NNALIDMYAKQGNLDCAFMVFNLMQDK--D--------VISWTSLITGCAYHGSYEEALKYFSDMRISGICPDHVVVSSI 443 (809)
Q Consensus 374 ~~~li~~y~~~g~~~~A~~~f~~~~~~--~--------~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~l 443 (809)
+++|...|.-..-+++-...|+.-..+ . ....+.++..+.-.|.+.-.+.++.+..+..-+.++.....+
T Consensus 139 qesLdRl~~L~~~V~~ii~~~e~~~~~ESsv~lW~KRl~~Vmy~~~~~llG~kEy~iS~d~~~~vi~~~~e~~p~L~s~L 218 (366)
T KOG2796|consen 139 QESLDRLHKLKTVVSKILANLEQGLAEESSIRLWRKRLGRVMYSMANCLLGMKEYVLSVDAYHSVIKYYPEQEPQLLSGL 218 (366)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhccchhhHHHHHHHHHHHHHHHHHHHHhcchhhhhhHHHHHHHHHhCCcccHHHHHHH
Confidence 355555555444444444444443221 1 233456677777778888888888888886655667777777
Q ss_pred HHHHhcccchhHHHHHHHHHHHhCCCCChh-----HHhHHHHHHHhcCCHHHHHHHHHhcCC---CCeeechHHHHHHHh
Q 003584 444 LSACAELTVLEFGQQVHAVFLKSGGCSSLS-----VDNSLVLVYAKCGCINDANRVFDSMHT---RDVITWTALIMGCAQ 515 (809)
Q Consensus 444 l~a~~~~~~~~~a~~~~~~~~~~g~~~~~~-----~~~~li~~y~k~g~~~~A~~~~~~~~~---~~~~~~~~li~~~~~ 515 (809)
.+.-.+.|+.+.+...++...+.....+.. +.......|.-..++..|...|++++. .|++.-|.-.-....
T Consensus 219 gr~~MQ~GD~k~a~~yf~~vek~~~kL~~~q~~~~V~~n~a~i~lg~nn~a~a~r~~~~i~~~D~~~~~a~NnKALcllY 298 (366)
T KOG2796|consen 219 GRISMQIGDIKTAEKYFQDVEKVTQKLDGLQGKIMVLMNSAFLHLGQNNFAEAHRFFTEILRMDPRNAVANNNKALCLLY 298 (366)
T ss_pred HHHHHhcccHHHHHHHHHHHHHHHhhhhccchhHHHHhhhhhheecccchHHHHHHHhhccccCCCchhhhchHHHHHHH
Confidence 777888899998888888777644333333 333334455667788888888888773 455666665555666
Q ss_pred cCChHHHHHHHHHHHHCCCCCCHHHHHHH
Q 003584 516 NGKGKEALQFYDQMLARGTKPDYITFVGL 544 (809)
Q Consensus 516 ~g~~~~A~~l~~~m~~~g~~pd~~t~~~l 544 (809)
.|+..+|++..+.|... .|...+-+++
T Consensus 299 lg~l~DAiK~~e~~~~~--~P~~~l~es~ 325 (366)
T KOG2796|consen 299 LGKLKDALKQLEAMVQQ--DPRHYLHESV 325 (366)
T ss_pred HHHHHHHHHHHHHHhcc--CCccchhhhH
Confidence 78999999999999884 5665554443
No 208
>PF13371 TPR_9: Tetratricopeptide repeat
Probab=96.35 E-value=0.0088 Score=46.60 Aligned_cols=63 Identities=17% Similarity=0.246 Sum_probs=51.8
Q ss_pred HHHhhcCCHHHHHHHHHhCcC-CC-CHHHHHHHHHHHHhcCChhHHHHHHHHHhccCCCCCccHH
Q 003584 582 DLLGRSGKLIEAKALLDQMVG-EP-DATVWKALLSACRVHGDLELGERAANNLFELEPMNAMPYV 644 (809)
Q Consensus 582 ~~~~~~g~~~eA~~~~~~m~~-~p-~~~~~~~ll~a~~~~g~~~~A~~~~~~~~~~~p~~~~~~~ 644 (809)
.+|.+.+++++|.+.++++.. .| ++..|......+...|++++|...+++.++..|+++....
T Consensus 3 ~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~~a~~~~~~g~~~~A~~~l~~~l~~~p~~~~~~~ 67 (73)
T PF13371_consen 3 QIYLQQEDYEEALEVLERALELDPDDPELWLQRARCLFQLGRYEEALEDLERALELSPDDPDARA 67 (73)
T ss_pred HHHHhCCCHHHHHHHHHHHHHhCcccchhhHHHHHHHHHhccHHHHHHHHHHHHHHCCCcHHHHH
Confidence 467888899999999888875 34 5558888899999999999999999999999998765443
No 209
>COG3898 Uncharacterized membrane-bound protein [Function unknown]
Probab=96.33 E-value=1.5 Score=44.82 Aligned_cols=243 Identities=17% Similarity=0.135 Sum_probs=157.1
Q ss_pred hcCCHHHHHHHHHHHhhcCCccCHh--HHHHHHHHHhcccchhHHHHHHHHHHHhCCCCChhHHhHHHHHHHhcCCHHHH
Q 003584 414 YHGSYEEALKYFSDMRISGICPDHV--VVSSILSACAELTVLEFGQQVHAVFLKSGGCSSLSVDNSLVLVYAKCGCINDA 491 (809)
Q Consensus 414 ~~g~~~~A~~~~~~m~~~g~~p~~~--t~~~ll~a~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~y~k~g~~~~A 491 (809)
-.|+++.|.+-|+.|... |... -+..+.-.-...|+.+.++++-...-... +.-...+.+.++..+..|+++.|
T Consensus 132 ~eG~~~~Ar~kfeAMl~d---PEtRllGLRgLyleAqr~GareaAr~yAe~Aa~~A-p~l~WA~~AtLe~r~~~gdWd~A 207 (531)
T COG3898 132 LEGDYEDARKKFEAMLDD---PETRLLGLRGLYLEAQRLGAREAARHYAERAAEKA-PQLPWAARATLEARCAAGDWDGA 207 (531)
T ss_pred hcCchHHHHHHHHHHhcC---hHHHHHhHHHHHHHHHhcccHHHHHHHHHHHHhhc-cCCchHHHHHHHHHHhcCChHHH
Confidence 357777777777777642 2211 12222223345677777776666554433 23345567788888889999999
Q ss_pred HHHHHhcC-----CCCee--echHHHHHHH---hcCChHHHHHHHHHHHHCCCCCCHH-HHHHHHHHHHccCCHHHHHHH
Q 003584 492 NRVFDSMH-----TRDVI--TWTALIMGCA---QNGKGKEALQFYDQMLARGTKPDYI-TFVGLLFACSHAGLAENARWY 560 (809)
Q Consensus 492 ~~~~~~~~-----~~~~~--~~~~li~~~~---~~g~~~~A~~l~~~m~~~g~~pd~~-t~~~ll~a~~~~g~~~~a~~~ 560 (809)
+++.+.-. ++|+. .--.|+.+-+ -.-+...|...-.+..+ +.||.+ .-..-..++.+.|++.++-.+
T Consensus 208 lkLvd~~~~~~vie~~~aeR~rAvLLtAkA~s~ldadp~~Ar~~A~~a~K--L~pdlvPaav~AAralf~d~~~rKg~~i 285 (531)
T COG3898 208 LKLVDAQRAAKVIEKDVAERSRAVLLTAKAMSLLDADPASARDDALEANK--LAPDLVPAAVVAARALFRDGNLRKGSKI 285 (531)
T ss_pred HHHHHHHHHHHhhchhhHHHHHHHHHHHHHHHHhcCChHHHHHHHHHHhh--cCCccchHHHHHHHHHHhccchhhhhhH
Confidence 99888654 44442 2222333322 12345666666555555 688876 444556789999999999999
Q ss_pred HHHhHHhhCCCCChHHHHHHHHHHhhcCCHHHH--H--HHHHhCcCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHhccC
Q 003584 561 FESMDKVYGIKPGPDHYACMIDLLGRSGKLIEA--K--ALLDQMVGEPDATVWKALLSACRVHGDLELGERAANNLFELE 636 (809)
Q Consensus 561 ~~~m~~~~~~~p~~~~~~~li~~~~~~g~~~eA--~--~~~~~m~~~p~~~~~~~ll~a~~~~g~~~~A~~~~~~~~~~~ 636 (809)
++.+- ...|.+..+...+ +.|.|+.... . +-+..|. +.+..+.-+...+-...|++..|..-.+.+....
T Consensus 286 lE~aW---K~ePHP~ia~lY~--~ar~gdta~dRlkRa~~L~slk-~nnaes~~~va~aAlda~e~~~ARa~Aeaa~r~~ 359 (531)
T COG3898 286 LETAW---KAEPHPDIALLYV--RARSGDTALDRLKRAKKLESLK-PNNAESSLAVAEAALDAGEFSAARAKAEAAAREA 359 (531)
T ss_pred HHHHH---hcCCChHHHHHHH--HhcCCCcHHHHHHHHHHHHhcC-ccchHHHHHHHHHHHhccchHHHHHHHHHHhhhC
Confidence 99886 4567776654433 3455543211 1 1123332 3455577778888899999999999999999999
Q ss_pred CCCCccHHhHhhhhhhc-CChhHHHHHHHHHHhC
Q 003584 637 PMNAMPYVQLSNMYSTA-GKWEDAARVRKLMKSR 669 (809)
Q Consensus 637 p~~~~~~~~l~~~~~~~-g~~~~A~~~~~~m~~~ 669 (809)
|. .+.|..|.++-... |+-.++..++-+....
T Consensus 360 pr-es~~lLlAdIeeAetGDqg~vR~wlAqav~A 392 (531)
T COG3898 360 PR-ESAYLLLADIEEAETGDQGKVRQWLAQAVKA 392 (531)
T ss_pred ch-hhHHHHHHHHHhhccCchHHHHHHHHHHhcC
Confidence 95 56888898887665 9999998888776543
No 210
>KOG4555 consensus TPR repeat-containing protein [Function unknown]
Probab=96.31 E-value=0.021 Score=48.19 Aligned_cols=90 Identities=23% Similarity=0.213 Sum_probs=76.2
Q ss_pred HHHhhcCCHHHHHHHHHhCcC--CCCHHHHHHHHHHHHhcCChhHHHHHHHHHhccCCCCC----ccHHhHhhhhhhcCC
Q 003584 582 DLLGRSGKLIEAKALLDQMVG--EPDATVWKALLSACRVHGDLELGERAANNLFELEPMNA----MPYVQLSNMYSTAGK 655 (809)
Q Consensus 582 ~~~~~~g~~~eA~~~~~~m~~--~p~~~~~~~ll~a~~~~g~~~~A~~~~~~~~~~~p~~~----~~~~~l~~~~~~~g~ 655 (809)
-+++..|++++|++.|.+... +..+..||.-..+++-+|+.++|+.-+++++++.-+.. ..|+.-+.+|...|+
T Consensus 51 valaE~g~Ld~AlE~F~qal~l~P~raSayNNRAQa~RLq~~~e~ALdDLn~AleLag~~trtacqa~vQRg~lyRl~g~ 130 (175)
T KOG4555|consen 51 IALAEAGDLDGALELFGQALCLAPERASAYNNRAQALRLQGDDEEALDDLNKALELAGDQTRTACQAFVQRGLLYRLLGN 130 (175)
T ss_pred HHHHhccchHHHHHHHHHHHHhcccchHhhccHHHHHHHcCChHHHHHHHHHHHHhcCccchHHHHHHHHHHHHHHHhCc
Confidence 357788999999999988764 45778999999999999999999999999999853332 258888999999999
Q ss_pred hhHHHHHHHHHHhCCC
Q 003584 656 WEDAARVRKLMKSRGI 671 (809)
Q Consensus 656 ~~~A~~~~~~m~~~~~ 671 (809)
-+.|..-|+...+.|.
T Consensus 131 dd~AR~DFe~AA~LGS 146 (175)
T KOG4555|consen 131 DDAARADFEAAAQLGS 146 (175)
T ss_pred hHHHHHhHHHHHHhCC
Confidence 9999999999887764
No 211
>PF13281 DUF4071: Domain of unknown function (DUF4071)
Probab=96.30 E-value=0.21 Score=51.88 Aligned_cols=159 Identities=21% Similarity=0.208 Sum_probs=97.2
Q ss_pred HHHHHHHhcCCHHHHHHHHHhcCCC---Ceee----chHHHHHHHh---cCChHHHHHHHHHHHHCCCCCCHHHHHHHHH
Q 003584 477 SLVLVYAKCGCINDANRVFDSMHTR---DVIT----WTALIMGCAQ---NGKGKEALQFYDQMLARGTKPDYITFVGLLF 546 (809)
Q Consensus 477 ~li~~y~k~g~~~~A~~~~~~~~~~---~~~~----~~~li~~~~~---~g~~~~A~~l~~~m~~~g~~pd~~t~~~ll~ 546 (809)
.|+-.|-...+++...++.+.+... ++.. --...-++.+ .|+.++|+.++..+....-.++..||..+..
T Consensus 146 ~lllSyRdiqdydamI~Lve~l~~~p~~~~~~~~~i~~~yafALnRrn~~gdre~Al~il~~~l~~~~~~~~d~~gL~GR 225 (374)
T PF13281_consen 146 NLLLSYRDIQDYDAMIKLVETLEALPTCDVANQHNIKFQYAFALNRRNKPGDREKALQILLPVLESDENPDPDTLGLLGR 225 (374)
T ss_pred HHHHHhhhhhhHHHHHHHHHHhhccCccchhcchHHHHHHHHHHhhcccCCCHHHHHHHHHHHHhccCCCChHHHHHHHH
Confidence 3444577778888888888887743 2111 1123344555 7889999999998766666788888887776
Q ss_pred HHHc---------cCCHHHHHHHHHHhHHhhCCCCChHHHHHHHHHHhhcCCHHHHH----HHH---HhCc-----CC--
Q 003584 547 ACSH---------AGLAENARWYFESMDKVYGIKPGPDHYACMIDLLGRSGKLIEAK----ALL---DQMV-----GE-- 603 (809)
Q Consensus 547 a~~~---------~g~~~~a~~~~~~m~~~~~~~p~~~~~~~li~~~~~~g~~~eA~----~~~---~~m~-----~~-- 603 (809)
.|-. ....++|+..|.+ .+.+.|+..+--.++.++.-+|...+.. ++- .... .+
T Consensus 226 IyKD~~~~s~~~d~~~ldkAi~~Y~k---gFe~~~~~Y~GIN~AtLL~~~g~~~~~~~el~~i~~~l~~llg~kg~~~~~ 302 (374)
T PF13281_consen 226 IYKDLFLESNFTDRESLDKAIEWYRK---GFEIEPDYYSGINAATLLMLAGHDFETSEELRKIGVKLSSLLGRKGSLEKM 302 (374)
T ss_pred HHHHHHHHcCccchHHHHHHHHHHHH---HHcCCccccchHHHHHHHHHcCCcccchHHHHHHHHHHHHHHHhhcccccc
Confidence 6532 2246677777653 3466676654444555555555432222 211 1111 01
Q ss_pred CCHHHHHHHHHHHHhcCChhHHHHHHHHHhccCCC
Q 003584 604 PDATVWKALLSACRVHGDLELGERAANNLFELEPM 638 (809)
Q Consensus 604 p~~~~~~~ll~a~~~~g~~~~A~~~~~~~~~~~p~ 638 (809)
.|--.+.+++.++.-.|+.+.|.+++++++.+.|+
T Consensus 303 ~dYWd~ATl~Ea~vL~~d~~ka~~a~e~~~~l~~~ 337 (374)
T PF13281_consen 303 QDYWDVATLLEASVLAGDYEKAIQAAEKAFKLKPP 337 (374)
T ss_pred ccHHHHHHHHHHHHHcCCHHHHHHHHHHHhhcCCc
Confidence 23335567778888888888888888888877764
No 212
>KOG2796 consensus Uncharacterized conserved protein [Function unknown]
Probab=96.29 E-value=0.19 Score=48.18 Aligned_cols=168 Identities=11% Similarity=0.041 Sum_probs=105.5
Q ss_pred HhHHHHHHHhcCCHHHHHHHHHhcCCC--Cee--------echHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHH
Q 003584 475 DNSLVLVYAKCGCINDANRVFDSMHTR--DVI--------TWTALIMGCAQNGKGKEALQFYDQMLARGTKPDYITFVGL 544 (809)
Q Consensus 475 ~~~li~~y~k~g~~~~A~~~~~~~~~~--~~~--------~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~pd~~t~~~l 544 (809)
+++|...|.-..-+++-...|+.-..| .+. .-+.++..+.-+|.+.-.+.++++.++...+-+..-...|
T Consensus 139 qesLdRl~~L~~~V~~ii~~~e~~~~~ESsv~lW~KRl~~Vmy~~~~~llG~kEy~iS~d~~~~vi~~~~e~~p~L~s~L 218 (366)
T KOG2796|consen 139 QESLDRLHKLKTVVSKILANLEQGLAEESSIRLWRKRLGRVMYSMANCLLGMKEYVLSVDAYHSVIKYYPEQEPQLLSGL 218 (366)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhccchhhHHHHHHHHHHHHHHHHHHHHhcchhhhhhHHHHHHHHHhCCcccHHHHHHH
Confidence 345555555444444444444433221 122 2345566666677888888889998886555566677788
Q ss_pred HHHHHccCCHHHHHHHHHHhHHhhC----CCCChHHHHHHHHHHhhcCCHHHHHHHHHhCcCC--CCHHHHHHHHHHHHh
Q 003584 545 LFACSHAGLAENARWYFESMDKVYG----IKPGPDHYACMIDLLGRSGKLIEAKALLDQMVGE--PDATVWKALLSACRV 618 (809)
Q Consensus 545 l~a~~~~g~~~~a~~~~~~m~~~~~----~~p~~~~~~~li~~~~~~g~~~eA~~~~~~m~~~--p~~~~~~~ll~a~~~ 618 (809)
.+.-.+.|+.+.|..+|+...+..+ +.-...+...+...|.-++++.+|...+.+++.. .|+...|+-.-...-
T Consensus 219 gr~~MQ~GD~k~a~~yf~~vek~~~kL~~~q~~~~V~~n~a~i~lg~nn~a~a~r~~~~i~~~D~~~~~a~NnKALcllY 298 (366)
T KOG2796|consen 219 GRISMQIGDIKTAEKYFQDVEKVTQKLDGLQGKIMVLMNSAFLHLGQNNFAEAHRFFTEILRMDPRNAVANNNKALCLLY 298 (366)
T ss_pred HHHHHhcccHHHHHHHHHHHHHHHhhhhccchhHHHHhhhhhheecccchHHHHHHHhhccccCCCchhhhchHHHHHHH
Confidence 8888899999999999987765422 2222333334445566677788888888777752 344444444444455
Q ss_pred cCChhHHHHHHHHHhccCCCCCcc
Q 003584 619 HGDLELGERAANNLFELEPMNAMP 642 (809)
Q Consensus 619 ~g~~~~A~~~~~~~~~~~p~~~~~ 642 (809)
.|+...|++..+.+.+..|.....
T Consensus 299 lg~l~DAiK~~e~~~~~~P~~~l~ 322 (366)
T KOG2796|consen 299 LGKLKDALKQLEAMVQQDPRHYLH 322 (366)
T ss_pred HHHHHHHHHHHHHHhccCCccchh
Confidence 677888888888888887764443
No 213
>KOG0543 consensus FKBP-type peptidyl-prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones]
Probab=96.22 E-value=0.033 Score=57.08 Aligned_cols=64 Identities=13% Similarity=0.093 Sum_probs=59.3
Q ss_pred HHHHHHHHHHHHhcCChhHHHHHHHHHhccCCCCCccHHhHhhhhhhcCChhHHHHHHHHHHhC
Q 003584 606 ATVWKALLSACRVHGDLELGERAANNLFELEPMNAMPYVQLSNMYSTAGKWEDAARVRKLMKSR 669 (809)
Q Consensus 606 ~~~~~~ll~a~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~ 669 (809)
..++..|...|.+.+++..|++..++.++++|+|.-+...-+.+|...|.++.|+..|+++.+.
T Consensus 257 ~~~~lNlA~c~lKl~~~~~Ai~~c~kvLe~~~~N~KALyRrG~A~l~~~e~~~A~~df~ka~k~ 320 (397)
T KOG0543|consen 257 LACHLNLAACYLKLKEYKEAIESCNKVLELDPNNVKALYRRGQALLALGEYDLARDDFQKALKL 320 (397)
T ss_pred HHHhhHHHHHHHhhhhHHHHHHHHHHHHhcCCCchhHHHHHHHHHHhhccHHHHHHHHHHHHHh
Confidence 4567788888999999999999999999999999999999999999999999999999999865
No 214
>PF06239 ECSIT: Evolutionarily conserved signalling intermediate in Toll pathway; InterPro: IPR010418 Activation of NF-kappaB as a consequence of signalling through the Toll and IL-1 receptors is a major element of innate immune responses. ECSIT plays an important role in signalling to NF-kappaB, functioning as the intermediate in the signalling pathways between TRAF-6 and MEKK-1 [].
Probab=96.06 E-value=0.043 Score=51.42 Aligned_cols=98 Identities=18% Similarity=0.260 Sum_probs=75.5
Q ss_pred HHHHHhc--CCCCeeechHHHHHHHh-----cCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHcc-------------
Q 003584 492 NRVFDSM--HTRDVITWTALIMGCAQ-----NGKGKEALQFYDQMLARGTKPDYITFVGLLFACSHA------------- 551 (809)
Q Consensus 492 ~~~~~~~--~~~~~~~~~~li~~~~~-----~g~~~~A~~l~~~m~~~g~~pd~~t~~~ll~a~~~~------------- 551 (809)
...|+.. ..+|-.+|..++..|.+ .|..+=....++.|.+-|+.-|..+|+.||+.+=+.
T Consensus 34 ~~~f~~~~~~~k~K~~F~~~V~~f~~~~~~RRGHVeFI~aAL~~M~efgv~kDL~~Y~~LLDvFPKg~fvp~n~fQ~~F~ 113 (228)
T PF06239_consen 34 EELFERAPGQAKDKATFLEAVDIFKQRDVRRRGHVEFIYAALKKMDEFGVEKDLEVYKALLDVFPKGKFVPRNFFQAEFM 113 (228)
T ss_pred HHHHHHHhhccccHHHHHHHHHHHHhcCCCCcChHHHHHHHHHHHHHcCCcccHHHHHHHHHhCCCCCcccccHHHHHhc
Confidence 3445554 35666677777777764 467777778889999999999999999999876542
Q ss_pred ---CCHHHHHHHHHHhHHhhCCCCChHHHHHHHHHHhhcCCH
Q 003584 552 ---GLAENARWYFESMDKVYGIKPGPDHYACMIDLLGRSGKL 590 (809)
Q Consensus 552 ---g~~~~a~~~~~~m~~~~~~~p~~~~~~~li~~~~~~g~~ 590 (809)
.+-+-|+++++.|... |+.||.+++..|++.+++.+..
T Consensus 114 hyp~Qq~c~i~lL~qME~~-gV~Pd~Et~~~ll~iFG~~s~p 154 (228)
T PF06239_consen 114 HYPRQQECAIDLLEQMENN-GVMPDKETEQMLLNIFGRKSHP 154 (228)
T ss_pred cCcHHHHHHHHHHHHHHHc-CCCCcHHHHHHHHHHhccccHH
Confidence 2346788999999765 9999999999999999887753
No 215
>PRK10803 tol-pal system protein YbgF; Provisional
Probab=96.05 E-value=0.068 Score=53.40 Aligned_cols=92 Identities=16% Similarity=0.130 Sum_probs=61.3
Q ss_pred HccCCHHHHHHHHHHhHHhhCCCC-ChHHHHHHHHHHhhcCCHHHHHHHHHhCcCC-CC----HHHHHHHHHHHHhcCCh
Q 003584 549 SHAGLAENARWYFESMDKVYGIKP-GPDHYACMIDLLGRSGKLIEAKALLDQMVGE-PD----ATVWKALLSACRVHGDL 622 (809)
Q Consensus 549 ~~~g~~~~a~~~~~~m~~~~~~~p-~~~~~~~li~~~~~~g~~~eA~~~~~~m~~~-p~----~~~~~~ll~a~~~~g~~ 622 (809)
...|++++|...|+.+.+.|.-.+ ....+.-+..+|...|++++|...|+.+... |+ ...|-.++..+...|+.
T Consensus 154 ~~~~~y~~Ai~af~~fl~~yP~s~~a~~A~y~LG~~y~~~g~~~~A~~~f~~vv~~yP~s~~~~dAl~klg~~~~~~g~~ 233 (263)
T PRK10803 154 QDKSRQDDAIVAFQNFVKKYPDSTYQPNANYWLGQLNYNKGKKDDAAYYFASVVKNYPKSPKAADAMFKVGVIMQDKGDT 233 (263)
T ss_pred HhcCCHHHHHHHHHHHHHHCcCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCCcchhHHHHHHHHHHHHcCCH
Confidence 445666677666666665432111 0234556677777777777777777776531 32 33566667778888999
Q ss_pred hHHHHHHHHHhccCCCCC
Q 003584 623 ELGERAANNLFELEPMNA 640 (809)
Q Consensus 623 ~~A~~~~~~~~~~~p~~~ 640 (809)
+.|...++++++..|++.
T Consensus 234 ~~A~~~~~~vi~~yP~s~ 251 (263)
T PRK10803 234 AKAKAVYQQVIKKYPGTD 251 (263)
T ss_pred HHHHHHHHHHHHHCcCCH
Confidence 999999999999888765
No 216
>KOG0550 consensus Molecular chaperone (DnaJ superfamily) [Posttranslational modification, protein turnover, chaperones]
Probab=95.90 E-value=0.54 Score=48.37 Aligned_cols=87 Identities=17% Similarity=0.101 Sum_probs=59.4
Q ss_pred HHccCCHHHHHHHHHHhHHhhCCCC-----ChHHHHHHHHHHhhcCCHHHHHHHHHhCcCCCCHH-HHHHHHH--HHHhc
Q 003584 548 CSHAGLAENARWYFESMDKVYGIKP-----GPDHYACMIDLLGRSGKLIEAKALLDQMVGEPDAT-VWKALLS--ACRVH 619 (809)
Q Consensus 548 ~~~~g~~~~a~~~~~~m~~~~~~~p-----~~~~~~~li~~~~~~g~~~eA~~~~~~m~~~p~~~-~~~~ll~--a~~~~ 619 (809)
..+.|.+.+|.+.|.... ++.| +...|........+.|++.+|+.--+... +-|+. ++.-+.. ++...
T Consensus 259 ~fk~G~y~~A~E~Yteal---~idP~n~~~naklY~nra~v~~rLgrl~eaisdc~~Al-~iD~syikall~ra~c~l~l 334 (486)
T KOG0550|consen 259 AFKNGNYRKAYECYTEAL---NIDPSNKKTNAKLYGNRALVNIRLGRLREAISDCNEAL-KIDSSYIKALLRRANCHLAL 334 (486)
T ss_pred HhhccchhHHHHHHHHhh---cCCccccchhHHHHHHhHhhhcccCCchhhhhhhhhhh-hcCHHHHHHHHHHHHHHHHH
Confidence 345677777777776655 4444 44567777777888899999888877766 44444 4433333 34556
Q ss_pred CChhHHHHHHHHHhccCCC
Q 003584 620 GDLELGERAANNLFELEPM 638 (809)
Q Consensus 620 g~~~~A~~~~~~~~~~~p~ 638 (809)
+++++|.+-++++.+++.+
T Consensus 335 e~~e~AV~d~~~a~q~~~s 353 (486)
T KOG0550|consen 335 EKWEEAVEDYEKAMQLEKD 353 (486)
T ss_pred HHHHHHHHHHHHHHhhccc
Confidence 7888999999988887654
No 217
>PF13424 TPR_12: Tetratricopeptide repeat; PDB: 3RO2_A 3Q15_A 3ASG_A 3ASD_A 3AS5_A 3AS4_A 3ASH_B 4A1S_B 3CEQ_B 3EDT_H ....
Probab=95.88 E-value=0.0082 Score=47.52 Aligned_cols=60 Identities=15% Similarity=0.177 Sum_probs=41.0
Q ss_pred HHHHHHHHHHhcCChhHHHHHHHHHhcc----CCC---CCccHHhHhhhhhhcCChhHHHHHHHHHH
Q 003584 608 VWKALLSACRVHGDLELGERAANNLFEL----EPM---NAMPYVQLSNMYSTAGKWEDAARVRKLMK 667 (809)
Q Consensus 608 ~~~~ll~a~~~~g~~~~A~~~~~~~~~~----~p~---~~~~~~~l~~~~~~~g~~~~A~~~~~~m~ 667 (809)
+++.+...|...|++++|+..+++++++ .++ -..++..++.+|...|++++|.+++++..
T Consensus 7 ~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~a~~~~~lg~~~~~~g~~~~A~~~~~~al 73 (78)
T PF13424_consen 7 AYNNLARVYRELGRYDEALDYYEKALDIEEQLGDDHPDTANTLNNLGECYYRLGDYEEALEYYQKAL 73 (78)
T ss_dssp HHHHHHHHHHHTT-HHHHHHHHHHHHHHHHHTTTHHHHHHHHHHHHHHHHHHTTHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 5666777777777777777777766543 222 24467788888888888888888887654
No 218
>COG0457 NrfG FOG: TPR repeat [General function prediction only]
Probab=95.81 E-value=2 Score=41.73 Aligned_cols=193 Identities=23% Similarity=0.205 Sum_probs=119.9
Q ss_pred hHHhHHHHHHHhcCCHHHHHHHHHhcC-----CCCeeechHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHH-
Q 003584 473 SVDNSLVLVYAKCGCINDANRVFDSMH-----TRDVITWTALIMGCAQNGKGKEALQFYDQMLARGTKPDYITFVGLLF- 546 (809)
Q Consensus 473 ~~~~~li~~y~k~g~~~~A~~~~~~~~-----~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~pd~~t~~~ll~- 546 (809)
.........+...+.+..+...+.... ......+..+...+...+.+.++...+.........+. ........
T Consensus 60 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~ 138 (291)
T COG0457 60 GLLLLLALALLKLGRLEEALELLEKALELELLPNLAEALLNLGLLLEALGKYEEALELLEKALALDPDPD-LAEALLALG 138 (291)
T ss_pred HHHHHHHHHHHHcccHHHHHHHHHHHHhhhhccchHHHHHHHHHHHHHHhhHHHHHHHHHHHHcCCCCcc-hHHHHHHHH
Confidence 444455556666666666666665543 22333455555556666667777777777766432221 11222222
Q ss_pred HHHccCCHHHHHHHHHHhHHhhCCCC----ChHHHHHHHHHHhhcCCHHHHHHHHHhCcCC-CC--HHHHHHHHHHHHhc
Q 003584 547 ACSHAGLAENARWYFESMDKVYGIKP----GPDHYACMIDLLGRSGKLIEAKALLDQMVGE-PD--ATVWKALLSACRVH 619 (809)
Q Consensus 547 a~~~~g~~~~a~~~~~~m~~~~~~~p----~~~~~~~li~~~~~~g~~~eA~~~~~~m~~~-p~--~~~~~~ll~a~~~~ 619 (809)
++...|++++|...+..... ..| ....+......+...++.++|...+.+.... ++ ...+..+...+...
T Consensus 139 ~~~~~~~~~~a~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 215 (291)
T COG0457 139 ALYELGDYEEALELYEKALE---LDPELNELAEALLALGALLEALGRYEEALELLEKALKLNPDDDAEALLNLGLLYLKL 215 (291)
T ss_pred HHHHcCCHHHHHHHHHHHHh---cCCCccchHHHHHHhhhHHHHhcCHHHHHHHHHHHHhhCcccchHHHHHhhHHHHHc
Confidence 56777777777777776632 222 2333444444466677888888877776642 33 45777777788888
Q ss_pred CChhHHHHHHHHHhccCCCCCccHHhHhhhhhhcCChhHHHHHHHHHHhC
Q 003584 620 GDLELGERAANNLFELEPMNAMPYVQLSNMYSTAGKWEDAARVRKLMKSR 669 (809)
Q Consensus 620 g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~ 669 (809)
++.+.|...+...+...|.....+..++..+...|.++++...+......
T Consensus 216 ~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 265 (291)
T COG0457 216 GKYEEALEYYEKALELDPDNAEALYNLALLLLELGRYEEALEALEKALEL 265 (291)
T ss_pred ccHHHHHHHHHHHHhhCcccHHHHhhHHHHHHHcCCHHHHHHHHHHHHHh
Confidence 88888888888888888765556666666666667788887777766554
No 219
>PF07079 DUF1347: Protein of unknown function (DUF1347); InterPro: IPR010764 This family consists of several hypothetical bacterial proteins of around 610 residues in length. Members of this family are highly conserved and seem to be specific to Chlamydia species. The function of this family is unknown.
Probab=95.72 E-value=3.3 Score=43.47 Aligned_cols=391 Identities=14% Similarity=0.042 Sum_probs=186.2
Q ss_pred cHHHHHHHH--hhCCChHHHHHHHHHHHHC--CCCC------------CcchHHHHHHHHhccCChHHHHHHHHHHHHhC
Q 003584 202 AWTTMITGY--SQNGYGFKAIECFRDMRVE--GVES------------NQFTFPSILTACAAVSARDFGAQVHGCILSSG 265 (809)
Q Consensus 202 ~~~~li~~~--~~~g~~~~A~~l~~~m~~~--g~~p------------~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~g 265 (809)
.|-.+..++ .+.+.+.+|++.+..-.+. +-.| |-.-=+..+.++...|.+.+|+.++..++..=
T Consensus 79 ~~l~LF~~L~~Y~~k~~~kal~~ls~w~~~~~~~~~~~Ld~ni~~l~~df~l~~i~a~sLIe~g~f~EgR~iLn~i~~~l 158 (549)
T PF07079_consen 79 AYLPLFKALVAYKQKEYRKALQALSVWKEQIKGTESPWLDTNIQQLFSDFFLDEIEAHSLIETGRFSEGRAILNRIIERL 158 (549)
T ss_pred hHHHHHHHHHHHHhhhHHHHHHHHHHHHhhhcccccchhhhhHHHHhhHHHHHHHHHHHHHhcCCcchHHHHHHHHHHHH
Confidence 344444432 4567777777777665443 2211 11112344566778999999999888887755
Q ss_pred CC----CchhHHHHHHHHHHhCCChHHHHHHHhccCCCCeeeHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCcccHHH
Q 003584 266 FE----ANVYVQSALIDMYAKCGDLDSARRLLEYSEIDNEVSWNSMIVGFARQGFHKEALSLFKKMHARDIKIDDFTYPS 341 (809)
Q Consensus 266 ~~----~~~~~~~~Li~~y~~~g~~~~A~~~f~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ 341 (809)
++ -+..+|+.++-++++.=-++- -+.+...=..-|--||-.|.+.=+.-++ -.=..+.|....+..
T Consensus 159 lkrE~~w~~d~yd~~vlmlsrSYfLEl----~e~~s~dl~pdyYemilfY~kki~~~d~------~~Y~k~~peeeL~s~ 228 (549)
T PF07079_consen 159 LKRECEWNSDMYDRAVLMLSRSYFLEL----KESMSSDLYPDYYEMILFYLKKIHAFDQ------RPYEKFIPEEELFST 228 (549)
T ss_pred hhhhhcccHHHHHHHHHHHhHHHHHHH----HHhcccccChHHHHHHHHHHHHHHHHhh------chHHhhCcHHHHHHH
Confidence 44 788899988888776432221 1111111122355566665543211111 000012222222222
Q ss_pred HHHHhhcC--CChHHHHHHHHHHHHhccCCchH-HHHHHHHHHHhcCCHHHHHHHHhhcC--------CCCHhHHHHHHH
Q 003584 342 VLNCFASN--IDLNNAKSVHSLIVKTGFEGYKF-VNNALIDMYAKQGNLDCAFMVFNLMQ--------DKDVISWTSLIT 410 (809)
Q Consensus 342 ll~~~~~~--~~~~~a~~i~~~~~~~g~~~~~~-~~~~li~~y~~~g~~~~A~~~f~~~~--------~~~~~~~~~li~ 410 (809)
++.-..-. ..+.--.+++..-...-+.|+-. +...|+.-+.+ +.+++..+-+.+. +.=+.++..++.
T Consensus 229 imqhlfi~p~e~l~~~mq~l~~We~~yv~p~~~LVi~~L~~~f~~--~~e~~~~~ce~ia~~~i~~Lke~li~~F~~~Ls 306 (549)
T PF07079_consen 229 IMQHLFIVPKERLPPLMQILENWENFYVHPNYDLVIEPLKQQFMS--DPEQVGHFCEAIASSKIEKLKEELIDRFGNLLS 306 (549)
T ss_pred HHHHHHhCCHhhccHHHHHHHHHHhhccCCchhHHHHHHHHHHhc--ChHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHH
Confidence 22221111 11222223333333333344322 22333333333 3333333222221 123346677777
Q ss_pred HHHhcCCHHHHHHHHHHHhhcCCccCHh----------HHHHHHHH-HhcccchhHHHHHHHHHHHhCCCCChhH--HhH
Q 003584 411 GCAYHGSYEEALKYFSDMRISGICPDHV----------VVSSILSA-CAELTVLEFGQQVHAVFLKSGGCSSLSV--DNS 477 (809)
Q Consensus 411 ~~~~~g~~~~A~~~~~~m~~~g~~p~~~----------t~~~ll~a-~~~~~~~~~a~~~~~~~~~~g~~~~~~~--~~~ 477 (809)
...+.++..+|.+.+.-+.-. .|+.. ++..++.. =....++..-..++..+....+....-+ .--
T Consensus 307 ~~Vk~~~T~~a~q~l~lL~~l--dp~~svs~Kllls~~~lq~Iv~~DD~~~Tklr~yL~lwe~~qs~DiDrqQLvh~L~~ 384 (549)
T PF07079_consen 307 FKVKQVQTEEAKQYLALLKIL--DPRISVSEKLLLSPKVLQDIVCEDDESYTKLRDYLNLWEEIQSYDIDRQQLVHYLVF 384 (549)
T ss_pred HHHHHHhHHHHHHHHHHHHhc--CCcchhhhhhhcCHHHHHHHHhcchHHHHHHHHHHHHHHHHHhhcccHHHHHHHHHH
Confidence 777778877777776655432 23221 11111100 0000111111222222222222111000 000
Q ss_pred HHHHHHhcCC-HHHHHHHHHhcC---CCCeeechHHH----HHHHhc---CChHHHHHHHHHHHHCCCCCCHHH----HH
Q 003584 478 LVLVYAKCGC-INDANRVFDSMH---TRDVITWTALI----MGCAQN---GKGKEALQFYDQMLARGTKPDYIT----FV 542 (809)
Q Consensus 478 li~~y~k~g~-~~~A~~~~~~~~---~~~~~~~~~li----~~~~~~---g~~~~A~~l~~~m~~~g~~pd~~t----~~ 542 (809)
-..-+-+.|. -++|..++..+. .-|...-|... .+|.+. ....+-+++-+-..+.|++|-.+. -+
T Consensus 385 ~Ak~lW~~g~~dekalnLLk~il~ft~yD~ec~n~v~~fvKq~Y~qaLs~~~~~rLlkLe~fi~e~gl~~i~i~e~eian 464 (549)
T PF07079_consen 385 GAKHLWEIGQCDEKALNLLKLILQFTNYDIECENIVFLFVKQAYKQALSMHAIPRLLKLEDFITEVGLTPITISEEEIAN 464 (549)
T ss_pred HHHHHHhcCCccHHHHHHHHHHHHhccccHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHhcCCCcccccHHHHHH
Confidence 1122333444 677777777665 33443333322 122221 123333444444556777774432 23
Q ss_pred HHHHH--HHccCCHHHHHHHHHHhHHhhCCCCChHHHHHHHHHHhhcCCHHHHHHHHHhCcCCCCHHHHHH
Q 003584 543 GLLFA--CSHAGLAENARWYFESMDKVYGIKPGPDHYACMIDLLGRSGKLIEAKALLDQMVGEPDATVWKA 611 (809)
Q Consensus 543 ~ll~a--~~~~g~~~~a~~~~~~m~~~~~~~p~~~~~~~li~~~~~~g~~~eA~~~~~~m~~~p~~~~~~~ 611 (809)
.|..| +...|++.++.-+-..+. .+.|++.+|..+.-.+....+++||.+++...| |+..+|++
T Consensus 465 ~LaDAEyLysqgey~kc~~ys~WL~---~iaPS~~~~RLlGl~l~e~k~Y~eA~~~l~~LP--~n~~~~ds 530 (549)
T PF07079_consen 465 FLADAEYLYSQGEYHKCYLYSSWLT---KIAPSPQAYRLLGLCLMENKRYQEAWEYLQKLP--PNERMRDS 530 (549)
T ss_pred HHHHHHHHHhcccHHHHHHHHHHHH---HhCCcHHHHHHHHHHHHHHhhHHHHHHHHHhCC--CchhhHHH
Confidence 33333 455688888876654443 678888888888888888888889998888886 56666654
No 220
>COG3898 Uncharacterized membrane-bound protein [Function unknown]
Probab=95.56 E-value=3.3 Score=42.48 Aligned_cols=267 Identities=16% Similarity=0.098 Sum_probs=154.0
Q ss_pred CCcccHHHHHHHhh--cCCChHHHHHHHHHHHHhccCCchHH--HHHHHHHHHhcCCHHHHHHHHhhcCCC---CHhHHH
Q 003584 334 IDDFTYPSVLNCFA--SNIDLNNAKSVHSLIVKTGFEGYKFV--NNALIDMYAKQGNLDCAFMVFNLMQDK---DVISWT 406 (809)
Q Consensus 334 p~~~t~~~ll~~~~--~~~~~~~a~~i~~~~~~~g~~~~~~~--~~~li~~y~~~g~~~~A~~~f~~~~~~---~~~~~~ 406 (809)
.|...+..++.+-. -.|+.+.|++-|+.|... |.... ...|.-.--+.|..+.|...-+..-+. -...|.
T Consensus 116 sDqepLIhlLeAQaal~eG~~~~Ar~kfeAMl~d---PEtRllGLRgLyleAqr~GareaAr~yAe~Aa~~Ap~l~WA~~ 192 (531)
T COG3898 116 SDQEPLIHLLEAQAALLEGDYEDARKKFEAMLDD---PETRLLGLRGLYLEAQRLGAREAARHYAERAAEKAPQLPWAAR 192 (531)
T ss_pred ccchHHHHHHHHHHHHhcCchHHHHHHHHHHhcC---hHHHHHhHHHHHHHHHhcccHHHHHHHHHHHHhhccCCchHHH
Confidence 34444444444332 236666666666655531 11111 111222223567777777766655432 235677
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHhhc-CCccCHh--HHHHHHHHHhc---ccchhHHHHHHHHHHHhCCCCChhHHh-HHH
Q 003584 407 SLITGCAYHGSYEEALKYFSDMRIS-GICPDHV--VVSSILSACAE---LTVLEFGQQVHAVFLKSGGCSSLSVDN-SLV 479 (809)
Q Consensus 407 ~li~~~~~~g~~~~A~~~~~~m~~~-g~~p~~~--t~~~ll~a~~~---~~~~~~a~~~~~~~~~~g~~~~~~~~~-~li 479 (809)
+.+...+..|+++.|+++.+.-+.. -+.++.. .-..+|.+-+. ..+...++..-.+..| +.|+..-.. .-.
T Consensus 193 AtLe~r~~~gdWd~AlkLvd~~~~~~vie~~~aeR~rAvLLtAkA~s~ldadp~~Ar~~A~~a~K--L~pdlvPaav~AA 270 (531)
T COG3898 193 ATLEARCAAGDWDGALKLVDAQRAAKVIEKDVAERSRAVLLTAKAMSLLDADPASARDDALEANK--LAPDLVPAAVVAA 270 (531)
T ss_pred HHHHHHHhcCChHHHHHHHHHHHHHHhhchhhHHHHHHHHHHHHHHHHhcCChHHHHHHHHHHhh--cCCccchHHHHHH
Confidence 8888899999999999999877653 2345432 22334433221 1234444444444443 334332221 124
Q ss_pred HHHHhcCCHHHHHHHHHhcC--CCCeeechHHHHHHHhcCChHHHHHHHHHHHH-CCCCCCH-HHHHHHHHHHHccCCHH
Q 003584 480 LVYAKCGCINDANRVFDSMH--TRDVITWTALIMGCAQNGKGKEALQFYDQMLA-RGTKPDY-ITFVGLLFACSHAGLAE 555 (809)
Q Consensus 480 ~~y~k~g~~~~A~~~~~~~~--~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~-~g~~pd~-~t~~~ll~a~~~~g~~~ 555 (809)
..|.+.|++.++-.+++.+- +|.+..| ..|....-.+.++.-+++... ..++||. .+...+..+-...|++.
T Consensus 271 ralf~d~~~rKg~~ilE~aWK~ePHP~ia----~lY~~ar~gdta~dRlkRa~~L~slk~nnaes~~~va~aAlda~e~~ 346 (531)
T COG3898 271 RALFRDGNLRKGSKILETAWKAEPHPDIA----LLYVRARSGDTALDRLKRAKKLESLKPNNAESSLAVAEAALDAGEFS 346 (531)
T ss_pred HHHHhccchhhhhhHHHHHHhcCCChHHH----HHHHHhcCCCcHHHHHHHHHHHHhcCccchHHHHHHHHHHHhccchH
Confidence 56788899999999888876 3443333 334443333444444444332 2256765 46777778888888888
Q ss_pred HHHHHHHHhHHhhCCCCChHHHHHHHHHHhhc-CCHHHHHHHHHhCcCCCCHHHHHHH
Q 003584 556 NARWYFESMDKVYGIKPGPDHYACMIDLLGRS-GKLIEAKALLDQMVGEPDATVWKAL 612 (809)
Q Consensus 556 ~a~~~~~~m~~~~~~~p~~~~~~~li~~~~~~-g~~~eA~~~~~~m~~~p~~~~~~~l 612 (809)
.|..--+... ...|....|..|.+.-.-. |+-.++...+-+....|....|...
T Consensus 347 ~ARa~Aeaa~---r~~pres~~lLlAdIeeAetGDqg~vR~wlAqav~APrdPaW~ad 401 (531)
T COG3898 347 AARAKAEAAA---REAPRESAYLLLADIEEAETGDQGKVRQWLAQAVKAPRDPAWTAD 401 (531)
T ss_pred HHHHHHHHHh---hhCchhhHHHHHHHHHhhccCchHHHHHHHHHHhcCCCCCccccc
Confidence 8877665544 5678888888888876554 8888888888877766666666543
No 221
>PF09205 DUF1955: Domain of unknown function (DUF1955); InterPro: IPR015288 Members of this family are found in hypothetical proteins synthesised by the Archaeal organism Sulfolobus. Their exact function has not, as yet, been determined. ; PDB: 1WY6_A.
Probab=95.50 E-value=0.75 Score=39.33 Aligned_cols=141 Identities=15% Similarity=0.193 Sum_probs=84.0
Q ss_pred HHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHhHHhhCCCCChHHHHHHHHHHhhcCCHHH
Q 003584 513 CAQNGKGKEALQFYDQMLARGTKPDYITFVGLLFACSHAGLAENARWYFESMDKVYGIKPGPDHYACMIDLLGRSGKLIE 592 (809)
Q Consensus 513 ~~~~g~~~~A~~l~~~m~~~g~~pd~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~~~~~~~li~~~~~~g~~~e 592 (809)
+.-.|..++..++..+...+ .+..-++.++--....-+-+-..+.++.+-+-|.+. .+|++..
T Consensus 12 ~ildG~V~qGveii~k~v~S---sni~E~NWvICNiiDaa~C~yvv~~LdsIGkiFDis--------------~C~NlKr 74 (161)
T PF09205_consen 12 RILDGDVKQGVEIIEKTVNS---SNIKEYNWVICNIIDAADCDYVVETLDSIGKIFDIS--------------KCGNLKR 74 (161)
T ss_dssp HHHTT-HHHHHHHHHHHHHH---S-HHHHTHHHHHHHHH--HHHHHHHHHHHGGGS-GG--------------G-S-THH
T ss_pred HHHhchHHHHHHHHHHHcCc---CCccccceeeeecchhhchhHHHHHHHHHhhhcCch--------------hhcchHH
Confidence 34567788888888887763 234445555544444445555566666654443332 3344444
Q ss_pred HHHHHHhCcCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHhccCCCCCccHHhHhhhhhhcCChhHHHHHHHHHHhCCCc
Q 003584 593 AKALLDQMVGEPDATVWKALLSACRVHGDLELGERAANNLFELEPMNAMPYVQLSNMYSTAGKWEDAARVRKLMKSRGIR 672 (809)
Q Consensus 593 A~~~~~~m~~~p~~~~~~~ll~a~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~ 672 (809)
....+-.+. .+......-+.+...+|.-+.-.+++..+.+.+..+|.....++++|.+.|+..++.+++.+.-++|++
T Consensus 75 Vi~C~~~~n--~~se~vD~ALd~lv~~~kkDqLdki~~~l~kn~~~~p~~L~kia~Ay~klg~~r~~~ell~~ACekG~k 152 (161)
T PF09205_consen 75 VIECYAKRN--KLSEYVDLALDILVKQGKKDQLDKIYNELKKNEEINPEFLVKIANAYKKLGNTREANELLKEACEKGLK 152 (161)
T ss_dssp HHHHHHHTT-----HHHHHHHHHHHHTT-HHHHHHHHHHH-----S-HHHHHHHHHHHHHTT-HHHHHHHHHHHHHTT-H
T ss_pred HHHHHHHhc--chHHHHHHHHHHHHHhccHHHHHHHHHHHhhccCCCHHHHHHHHHHHHHhcchhhHHHHHHHHHHhchH
Confidence 444333322 223334455677888999999889999888766668899999999999999999999999999999874
No 222
>KOG1130 consensus Predicted G-alpha GTPase interaction protein, contains GoLoco domain [Signal transduction mechanisms]
Probab=95.37 E-value=0.23 Score=50.67 Aligned_cols=131 Identities=12% Similarity=-0.032 Sum_probs=88.3
Q ss_pred eechHHHHHHHhcCChHHHHHHHHHHH----HCCCCCC-HHHHHHHHHHHHccCCHHHHHHHHHHhHHh----hCCCCCh
Q 003584 504 ITWTALIMGCAQNGKGKEALQFYDQML----ARGTKPD-YITFVGLLFACSHAGLAENARWYFESMDKV----YGIKPGP 574 (809)
Q Consensus 504 ~~~~~li~~~~~~g~~~~A~~l~~~m~----~~g~~pd-~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~----~~~~p~~ 574 (809)
..|..|.+.|.-.|+++.|+..-+.-+ +-|-+.. ...+..+.+++.-.|+++.|.+.|+..... ..-....
T Consensus 196 Ra~GnLGNTyYlLGdf~~ai~~H~~RL~ia~efGDrAaeRRA~sNlgN~hiflg~fe~A~ehYK~tl~LAielg~r~vEA 275 (639)
T KOG1130|consen 196 RAYGNLGNTYYLLGDFDQAIHFHKLRLEIAQEFGDRAAERRAHSNLGNCHIFLGNFELAIEHYKLTLNLAIELGNRTVEA 275 (639)
T ss_pred chhcccCceeeeeccHHHHHHHHHHHHHHHHHhhhHHHHHHhhcccchhhhhhcccHhHHHHHHHHHHHHHHhcchhHHH
Confidence 356666677777888888887654322 2232222 246778888888899999999888654321 0111223
Q ss_pred HHHHHHHHHHhhcCCHHHHHHHHHhCcC---C-----CCHHHHHHHHHHHHhcCChhHHHHHHHHHhc
Q 003584 575 DHYACMIDLLGRSGKLIEAKALLDQMVG---E-----PDATVWKALLSACRVHGDLELGERAANNLFE 634 (809)
Q Consensus 575 ~~~~~li~~~~~~g~~~eA~~~~~~m~~---~-----p~~~~~~~ll~a~~~~g~~~~A~~~~~~~~~ 634 (809)
....+|.+.|.-...+++|+.++.+-.. + ....++-+|..++...|..+.|+..+++.++
T Consensus 276 QscYSLgNtytll~e~~kAI~Yh~rHLaIAqeL~DriGe~RacwSLgna~~alg~h~kAl~fae~hl~ 343 (639)
T KOG1130|consen 276 QSCYSLGNTYTLLKEVQKAITYHQRHLAIAQELEDRIGELRACWSLGNAFNALGEHRKALYFAELHLR 343 (639)
T ss_pred HHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHhhhhHHHHHHHHHHHHH
Confidence 4455677788777888889888876442 1 3445777899999999999999988887655
No 223
>PF13424 TPR_12: Tetratricopeptide repeat; PDB: 3RO2_A 3Q15_A 3ASG_A 3ASD_A 3AS5_A 3AS4_A 3ASH_B 4A1S_B 3CEQ_B 3EDT_H ....
Probab=95.33 E-value=0.021 Score=45.16 Aligned_cols=59 Identities=19% Similarity=0.251 Sum_probs=32.8
Q ss_pred HHHHHHHHhhcCCHHHHHHHHHhCcC--------CCC-HHHHHHHHHHHHhcCChhHHHHHHHHHhcc
Q 003584 577 YACMIDLLGRSGKLIEAKALLDQMVG--------EPD-ATVWKALLSACRVHGDLELGERAANNLFEL 635 (809)
Q Consensus 577 ~~~li~~~~~~g~~~eA~~~~~~m~~--------~p~-~~~~~~ll~a~~~~g~~~~A~~~~~~~~~~ 635 (809)
|+.+...|.+.|++++|++.+++... .|+ ..++..+...+...|+.++|++.+++++++
T Consensus 8 ~~~la~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~a~~~~~lg~~~~~~g~~~~A~~~~~~al~i 75 (78)
T PF13424_consen 8 YNNLARVYRELGRYDEALDYYEKALDIEEQLGDDHPDTANTLNNLGECYYRLGDYEEALEYYQKALDI 75 (78)
T ss_dssp HHHHHHHHHHTT-HHHHHHHHHHHHHHHHHTTTHHHHHHHHHHHHHHHHHHTTHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhh
Confidence 34444444444444444444443331 122 346677777777777777777777776543
No 224
>KOG2280 consensus Vacuolar assembly/sorting protein VPS16 [Intracellular trafficking, secretion, and vesicular transport]
Probab=95.25 E-value=6.6 Score=43.97 Aligned_cols=359 Identities=12% Similarity=-0.031 Sum_probs=174.3
Q ss_pred HHHcCCCchhHHHHHHH--------HHHcCCCCCcccHHH-----HHHHhhcCCCchHHHHHHHHHHHhCCCCchHHHHH
Q 003584 107 GYSNYGLDIEAFELFWQ--------MQLEGYRPSQYTLDN-----VLRLCSLKGLLQRGEQFHGYAIKTCFDLNAFVVTG 173 (809)
Q Consensus 107 ~~~~~g~~~~A~~~~~~--------m~~~g~~p~~~t~~~-----ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~ 173 (809)
++.+.-++++-..+-.. +..-|++.+..-|.. +|.-+...+.+..|.++-..+-..-.+. ..++..
T Consensus 398 ~~l~~~~~d~~~~v~~~lrVln~~r~~~~gIplT~~qy~~l~~~~vi~Rl~~r~~Y~vaIQva~~l~~p~~~~-~~Vl~~ 476 (829)
T KOG2280|consen 398 ASLRTPNPDEYMRVCRELRVLNALRDVRIGIPLTHEQYRHLSEEVVIDRLVDRHLYSVAIQVAKLLNLPESQG-DRVLLE 476 (829)
T ss_pred cccccCChHHHHHHHHHHHHHhhhcccccCccccHHHHhhhchhhhhHHHHhcchhHHHHHHHHHhCCccccc-cHHHHH
Confidence 34444555554433333 234466655554443 4556666777777777766553222122 567777
Q ss_pred HHHhhhcCCCh---hHHHHHhhhCCCC-CCcccHHHHHHHHhhCCChHHHHHHHHHHHHCCC----CCCcchHHHHHHHH
Q 003584 174 LVDMYAKCKCI---FEAEYLFKMFPDG-KNHVAWTTMITGYSQNGYGFKAIECFRDMRVEGV----ESNQFTFPSILTAC 245 (809)
Q Consensus 174 li~~y~~~g~~---~~A~~~f~~~~~~-~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~----~p~~~t~~~ll~~~ 245 (809)
...-+.+..+. +-+..+=+++... ...++|..+.+--.+.|+++-|..+++.=...+- -.+-.-+...+.-+
T Consensus 477 Wa~~kI~~~d~~d~~vld~I~~kls~~~~~~iSy~~iA~~Ay~~GR~~LA~kLle~E~~~~~qV~lLL~m~~~~~AL~ka 556 (829)
T KOG2280|consen 477 WARRKIKQSDKMDEEVLDKIDEKLSAKLTPGISYAAIARRAYQEGRFELARKLLELEPRSGEQVPLLLKMKDSSLALKKA 556 (829)
T ss_pred HHHHHHhccCccchHHHHHHHHHhcccCCCceeHHHHHHHHHhcCcHHHHHHHHhcCCCccchhHHHhccchHHHHHHHH
Confidence 77777665332 2223333333331 3567888888888899999999888764322211 11233355556666
Q ss_pred hccCChHHHHHHHHHHHHhCCCCchhHHHHHHHHHHhCCChHHHHHHHhccCC-CCeeeHHHHHHHHHhcCChhHHHHHH
Q 003584 246 AAVSARDFGAQVHGCILSSGFEANVYVQSALIDMYAKCGDLDSARRLLEYSEI-DNEVSWNSMIVGFARQGFHKEALSLF 324 (809)
Q Consensus 246 ~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~Li~~y~~~g~~~~A~~~f~~~~~-~~~~~~~~li~~~~~~g~~~~A~~~~ 324 (809)
...|+.+...+++-++...- +...+... ..+...|..++..... .|..+ +..+.+.++-.+++..|
T Consensus 557 ies~d~~Li~~Vllhlk~~~---~~s~l~~~------l~~~p~a~~lY~~~~r~~~~~~----l~d~y~q~dn~~~~a~~ 623 (829)
T KOG2280|consen 557 IESGDTDLIIQVLLHLKNKL---NRSSLFMT------LRNQPLALSLYRQFMRHQDRAT----LYDFYNQDDNHQALASF 623 (829)
T ss_pred HhcCCchhHHHHHHHHHHHH---HHHHHHHH------HHhchhhhHHHHHHHHhhchhh----hhhhhhcccchhhhhhh
Confidence 66676666666555544321 00111100 1122233333322111 11110 11111222222222222
Q ss_pred HHHH--H-CCCCCCcccHHHHHHHhhcCCChHHHHHHHHHHH-----------HhccCCchHHHHHHHHHHHhcCCHHHH
Q 003584 325 KKMH--A-RDIKIDDFTYPSVLNCFASNIDLNNAKSVHSLIV-----------KTGFEGYKFVNNALIDMYAKQGNLDCA 390 (809)
Q Consensus 325 ~~m~--~-~g~~p~~~t~~~ll~~~~~~~~~~~a~~i~~~~~-----------~~g~~~~~~~~~~li~~y~~~g~~~~A 390 (809)
..-. . ..+.+-........+++++........+..+.-. +.|..-...+.+--+.-+...|+..+|
T Consensus 624 ~~q~~~~~~~~~~r~~~lk~~a~~~a~sk~~s~e~ka~ed~~kLl~lQ~~Le~q~~~~f~dlSl~dTv~~li~~g~~k~a 703 (829)
T KOG2280|consen 624 HLQASYAAETIEGRIPALKTAANAFAKSKEKSFEAKALEDQMKLLKLQRTLEDQFGGSFVDLSLHDTVTTLILIGQNKRA 703 (829)
T ss_pred hhhhhhhhhhhcccchhHHHHHHHHhhhhhhhhHHHHHHHHHHHHHHHHHHHHHhccccccCcHHHHHHHHHHccchHHH
Confidence 1100 0 0011122222333344444443222222211111 112112222233344445667788888
Q ss_pred HHHHhhcCCCCHhHHHHHHHHHHhcCCHHHHHHHHHHHhhcCCccCHhHHHHHHHHHhcccchhHHHHHHHHHHHhCCCC
Q 003584 391 FMVFNLMQDKDVISWTSLITGCAYHGSYEEALKYFSDMRISGICPDHVVVSSILSACAELTVLEFGQQVHAVFLKSGGCS 470 (809)
Q Consensus 391 ~~~f~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~~~~~~a~~~~~~~~~~g~~~ 470 (809)
.++-.+..-+|-..|---+.+++..+++++-+++-+.+.. +.-|.-+..+|.+.|+.++|..+....-.
T Consensus 704 ~ql~~~FkipdKr~~wLk~~aLa~~~kweeLekfAkskks------PIGy~PFVe~c~~~~n~~EA~KYiprv~~----- 772 (829)
T KOG2280|consen 704 EQLKSDFKIPDKRLWWLKLTALADIKKWEELEKFAKSKKS------PIGYLPFVEACLKQGNKDEAKKYIPRVGG----- 772 (829)
T ss_pred HHHHHhcCCcchhhHHHHHHHHHhhhhHHHHHHHHhccCC------CCCchhHHHHHHhcccHHHHhhhhhccCC-----
Confidence 8888887777777777777788888888776666555441 34455566667777776666665443211
Q ss_pred ChhHHhHHHHHHHhcCCHHHHHHH
Q 003584 471 SLSVDNSLVLVYAKCGCINDANRV 494 (809)
Q Consensus 471 ~~~~~~~li~~y~k~g~~~~A~~~ 494 (809)
+.-.+.+|.++|++.+|.++
T Consensus 773 ----l~ekv~ay~~~~~~~eAad~ 792 (829)
T KOG2280|consen 773 ----LQEKVKAYLRVGDVKEAADL 792 (829)
T ss_pred ----hHHHHHHHHHhccHHHHHHH
Confidence 01345566666666665544
No 225
>KOG1920 consensus IkappaB kinase complex, IKAP component [Transcription]
Probab=95.24 E-value=5.4 Score=47.05 Aligned_cols=158 Identities=18% Similarity=0.181 Sum_probs=89.4
Q ss_pred CCHHHHHHHHhhcCCCCHhHHHHHHHHHHhcCCHHHHHHHHHHHhhcCCccCHhHHHHHHHHHhcccchhHHHHHHHHHH
Q 003584 385 GNLDCAFMVFNLMQDKDVISWTSLITGCAYHGSYEEALKYFSDMRISGICPDHVVVSSILSACAELTVLEFGQQVHAVFL 464 (809)
Q Consensus 385 g~~~~A~~~f~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~~~~~~a~~~~~~~~ 464 (809)
+++++|+.-+.++. ...|.-.+..--++|.+.+|+.++ .|+...+..+..+|+.. +.
T Consensus 894 ~ry~~AL~hLs~~~---~~~~~e~~n~I~kh~Ly~~aL~ly--------~~~~e~~k~i~~~ya~h------------L~ 950 (1265)
T KOG1920|consen 894 KRYEDALSHLSECG---ETYFPECKNYIKKHGLYDEALALY--------KPDSEKQKVIYEAYADH------------LR 950 (1265)
T ss_pred HHHHHHHHHHHHcC---ccccHHHHHHHHhcccchhhhhee--------ccCHHHHHHHHHHHHHH------------HH
Confidence 34444444444443 122333333334445555555444 57777776666655431 11
Q ss_pred HhCCCCChhHHhHHHHHHHhcCCHHHHHHHHHhcCCCCeeechHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHH--HH
Q 003584 465 KSGGCSSLSVDNSLVLVYAKCGCINDANRVFDSMHTRDVITWTALIMGCAQNGKGKEALQFYDQMLARGTKPDYIT--FV 542 (809)
Q Consensus 465 ~~g~~~~~~~~~~li~~y~k~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~pd~~t--~~ 542 (809)
+.. .++--.-+|.++|+.++|.+.+ ...|++.+|+.+-.+|.. .-|... -.
T Consensus 951 ~~~------~~~~Aal~Ye~~GklekAl~a~------------------~~~~dWr~~l~~a~ql~~---~~de~~~~a~ 1003 (1265)
T KOG1920|consen 951 EEL------MSDEAALMYERCGKLEKALKAY------------------KECGDWREALSLAAQLSE---GKDELVILAE 1003 (1265)
T ss_pred Hhc------cccHHHHHHHHhccHHHHHHHH------------------HHhccHHHHHHHHHhhcC---CHHHHHHHHH
Confidence 111 1222234688888888886554 456888888888777642 222222 24
Q ss_pred HHHHHHHccCCHHHHHHHHHHhHHhhCCCCChHHHHHHHHHHhhcCCHHHHHHHHHhCc
Q 003584 543 GLLFACSHAGLAENARWYFESMDKVYGIKPGPDHYACMIDLLGRSGKLIEAKALLDQMV 601 (809)
Q Consensus 543 ~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~~~~~~~li~~~~~~g~~~eA~~~~~~m~ 601 (809)
.|..-+...++.-+|-++......+ +.--+..|+++..+++|..+.....
T Consensus 1004 ~L~s~L~e~~kh~eAa~il~e~~sd---------~~~av~ll~ka~~~~eAlrva~~~~ 1053 (1265)
T KOG1920|consen 1004 ELVSRLVEQRKHYEAAKILLEYLSD---------PEEAVALLCKAKEWEEALRVASKAK 1053 (1265)
T ss_pred HHHHHHHHcccchhHHHHHHHHhcC---------HHHHHHHHhhHhHHHHHHHHHHhcc
Confidence 5667777888888887777655432 2334566777888888887765544
No 226
>KOG1585 consensus Protein required for fusion of vesicles in vesicular transport, gamma-SNAP [Intracellular trafficking, secretion, and vesicular transport]
Probab=95.20 E-value=3.1 Score=39.89 Aligned_cols=87 Identities=16% Similarity=0.130 Sum_probs=55.0
Q ss_pred HHHHHHHHHhhcCCHHHHHHHHHhCcC-------CCCHH-HHHHHHHHHHhcCChhHHHHHHHHHhcc----CCCCCccH
Q 003584 576 HYACMIDLLGRSGKLIEAKALLDQMVG-------EPDAT-VWKALLSACRVHGDLELGERAANNLFEL----EPMNAMPY 643 (809)
Q Consensus 576 ~~~~li~~~~~~g~~~eA~~~~~~m~~-------~p~~~-~~~~ll~a~~~~g~~~~A~~~~~~~~~~----~p~~~~~~ 643 (809)
.|......|.|..+++||-..|.+-.. -|+.. .+-+.+-.+....++..|+..++.-.+. .|++..+.
T Consensus 152 l~gk~sr~lVrl~kf~Eaa~a~lKe~~~~~~~~~y~~~~k~~va~ilv~L~~~Dyv~aekc~r~~~qip~f~~sed~r~l 231 (308)
T KOG1585|consen 152 LYGKCSRVLVRLEKFTEAATAFLKEGVAADKCDAYNSQCKAYVAAILVYLYAHDYVQAEKCYRDCSQIPAFLKSEDSRSL 231 (308)
T ss_pred HHHHhhhHhhhhHHhhHHHHHHHHhhhHHHHHhhcccHHHHHHHHHHHHhhHHHHHHHHHHhcchhcCccccChHHHHHH
Confidence 344455667777888887776655432 13332 3445555566667888888888876553 46666777
Q ss_pred HhHhhhhhhcCChhHHHHHH
Q 003584 644 VQLSNMYSTAGKWEDAARVR 663 (809)
Q Consensus 644 ~~l~~~~~~~g~~~~A~~~~ 663 (809)
..|+..| ..|+.+++.++.
T Consensus 232 enLL~ay-d~gD~E~~~kvl 250 (308)
T KOG1585|consen 232 ENLLTAY-DEGDIEEIKKVL 250 (308)
T ss_pred HHHHHHh-ccCCHHHHHHHH
Confidence 7777665 457777776554
No 227
>PF12921 ATP13: Mitochondrial ATPase expression; InterPro: IPR024319 ATPase expression protein 2 (also known as ATP13 in some species) is necessary for the expression of subunit 9 of mitochondrial ATPase. The protein has a basic amino terminal signal sequence that is cleaved upon import into mitochondria [].
Probab=95.17 E-value=0.084 Score=45.92 Aligned_cols=94 Identities=12% Similarity=0.177 Sum_probs=60.1
Q ss_pred hHHhHHHHHHHhcCCHHHHHHHHHhcCCCCeeechHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccC
Q 003584 473 SVDNSLVLVYAKCGCINDANRVFDSMHTRDVITWTALIMGCAQNGKGKEALQFYDQMLARGTKPDYITFVGLLFACSHAG 552 (809)
Q Consensus 473 ~~~~~li~~y~k~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~pd~~t~~~ll~a~~~~g 552 (809)
.++.+++.++++.|+++....+++..=..|+. +-...+. --....+.|+..++.+++.+++..|
T Consensus 3 ~~~~~ii~al~r~g~~~~i~~~i~~~WgI~~~-------~~~~~~~---------~~~~spl~Pt~~lL~AIv~sf~~n~ 66 (126)
T PF12921_consen 3 ELLCNIIYALGRSGQLDSIKSYIKSVWGIDVN-------GKKKEGD---------YPPSSPLYPTSRLLIAIVHSFGYNG 66 (126)
T ss_pred HHHHHHHHHHhhcCCHHHHHHHHHHhcCCCCC-------CccccCc---------cCCCCCCCCCHHHHHHHHHHHHhcc
Confidence 34556666667777777666666554321111 1011111 1122346788888888888888888
Q ss_pred CHHHHHHHHHHhHHhhCCCCChHHHHHHHH
Q 003584 553 LAENARWYFESMDKVYGIKPGPDHYACMID 582 (809)
Q Consensus 553 ~~~~a~~~~~~m~~~~~~~p~~~~~~~li~ 582 (809)
++..|.++.+...+.|+++-+...|..|+.
T Consensus 67 ~i~~al~~vd~fs~~Y~I~i~~~~W~~Ll~ 96 (126)
T PF12921_consen 67 DIFSALKLVDFFSRKYPIPIPKEFWRRLLE 96 (126)
T ss_pred cHHHHHHHHHHHHHHcCCCCCHHHHHHHHH
Confidence 888888888888888887777777776654
No 228
>PRK11906 transcriptional regulator; Provisional
Probab=95.09 E-value=0.23 Score=52.43 Aligned_cols=79 Identities=14% Similarity=-0.014 Sum_probs=51.6
Q ss_pred HHHHHHHHHhCcC--CCCHHHHHHHHHHHHhcCChhHHHHHHHHHhccCCCCCccHHhHhhhhhhcCChhHHHHHHHHHH
Q 003584 590 LIEAKALLDQMVG--EPDATVWKALLSACRVHGDLELGERAANNLFELEPMNAMPYVQLSNMYSTAGKWEDAARVRKLMK 667 (809)
Q Consensus 590 ~~eA~~~~~~m~~--~p~~~~~~~ll~a~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~ 667 (809)
..+|.++.++... +.|+.....+..+....|+.+.|...|+++..++|+.+.++...+......|+.++|.+.+++..
T Consensus 320 ~~~a~~~A~rAveld~~Da~a~~~~g~~~~~~~~~~~a~~~f~rA~~L~Pn~A~~~~~~~~~~~~~G~~~~a~~~i~~al 399 (458)
T PRK11906 320 AQKALELLDYVSDITTVDGKILAIMGLITGLSGQAKVSHILFEQAKIHSTDIASLYYYRALVHFHNEKIEEARICIDKSL 399 (458)
T ss_pred HHHHHHHHHHHHhcCCCCHHHHHHHHHHHHhhcchhhHHHHHHHHhhcCCccHHHHHHHHHHHHHcCCHHHHHHHHHHHh
Confidence 3445555544443 34566666666666666667777777777777777777777777777777777777777776644
Q ss_pred h
Q 003584 668 S 668 (809)
Q Consensus 668 ~ 668 (809)
+
T Consensus 400 r 400 (458)
T PRK11906 400 Q 400 (458)
T ss_pred c
Confidence 3
No 229
>KOG2114 consensus Vacuolar assembly/sorting protein PEP5/VPS11 [Intracellular trafficking, secretion, and vesicular transport]
Probab=95.00 E-value=8.3 Score=43.79 Aligned_cols=120 Identities=13% Similarity=0.003 Sum_probs=76.9
Q ss_pred hHHHHHHHHHccCChhHHHHHhhhCCCCCcchHHHHHH----HHHcCCCchhHHHHHHHHHHcCCCCCcccHHHHHHHhh
Q 003584 69 TWNTMIAAYANSGRLREAKKLFNETPFKNFFTWSSLIY----GYSNYGLDIEAFELFWQMQLEGYRPSQYTLDNVLRLCS 144 (809)
Q Consensus 69 ~~~~li~~~~~~g~~~~A~~~f~~~~~~~~~~~~~li~----~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~ 144 (809)
....-++.+.+-.-++.|..+-..-..+ ..+--.+.. -+-+.|++++|...|-+-... +.| +.+++-+.
T Consensus 336 ~le~kL~iL~kK~ly~~Ai~LAk~~~~d-~d~~~~i~~kYgd~Ly~Kgdf~~A~~qYI~tI~~-le~-----s~Vi~kfL 408 (933)
T KOG2114|consen 336 DLETKLDILFKKNLYKVAINLAKSQHLD-EDTLAEIHRKYGDYLYGKGDFDEATDQYIETIGF-LEP-----SEVIKKFL 408 (933)
T ss_pred cHHHHHHHHHHhhhHHHHHHHHHhcCCC-HHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHccc-CCh-----HHHHHHhc
Confidence 3456677888888888888887654432 222223333 345789999999888776532 233 45666665
Q ss_pred cCCCchHHHHHHHHHHHhCCCCchHHHHHHHHhhhcCCChhHHHHHhhhCCC
Q 003584 145 LKGLLQRGEQFHGYAIKTCFDLNAFVVTGLVDMYAKCKCIFEAEYLFKMFPD 196 (809)
Q Consensus 145 ~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~y~~~g~~~~A~~~f~~~~~ 196 (809)
....+..-...++.+.+.|+. +...-+.|+.+|.|.++.+.-.+..+..+.
T Consensus 409 daq~IknLt~YLe~L~~~gla-~~dhttlLLncYiKlkd~~kL~efI~~~~~ 459 (933)
T KOG2114|consen 409 DAQRIKNLTSYLEALHKKGLA-NSDHTTLLLNCYIKLKDVEKLTEFISKCDK 459 (933)
T ss_pred CHHHHHHHHHHHHHHHHcccc-cchhHHHHHHHHHHhcchHHHHHHHhcCCC
Confidence 555566666667777777754 344556777888888777776666665553
No 230
>KOG0543 consensus FKBP-type peptidyl-prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones]
Probab=94.93 E-value=0.48 Score=48.84 Aligned_cols=94 Identities=13% Similarity=0.122 Sum_probs=76.7
Q ss_pred HHHHHHHHHhhcCCHHHHHHHHHhCcC--CCCHHHHHHHHHHHHhcCChhHHHHHHHHHhccCCCCCccHHhHhhhhhhc
Q 003584 576 HYACMIDLLGRSGKLIEAKALLDQMVG--EPDATVWKALLSACRVHGDLELGERAANNLFELEPMNAMPYVQLSNMYSTA 653 (809)
Q Consensus 576 ~~~~li~~~~~~g~~~eA~~~~~~m~~--~p~~~~~~~ll~a~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~ 653 (809)
.+..|.-.|.+.+.+.+|++.-++... ++|.-..--=..+|...|+++.|...|+++++++|+|-.+-..|+.+-.+.
T Consensus 259 ~~lNlA~c~lKl~~~~~Ai~~c~kvLe~~~~N~KALyRrG~A~l~~~e~~~A~~df~ka~k~~P~Nka~~~el~~l~~k~ 338 (397)
T KOG0543|consen 259 CHLNLAACYLKLKEYKEAIESCNKVLELDPNNVKALYRRGQALLALGEYDLARDDFQKALKLEPSNKAARAELIKLKQKI 338 (397)
T ss_pred HhhHHHHHHHhhhhHHHHHHHHHHHHhcCCCchhHHHHHHHHHHhhccHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHH
Confidence 456677778888888888888877764 456666666788999999999999999999999999998888888887777
Q ss_pred CChhHH-HHHHHHHHhC
Q 003584 654 GKWEDA-ARVRKLMKSR 669 (809)
Q Consensus 654 g~~~~A-~~~~~~m~~~ 669 (809)
....+. .++|..|-.+
T Consensus 339 ~~~~~kekk~y~~mF~k 355 (397)
T KOG0543|consen 339 REYEEKEKKMYANMFAK 355 (397)
T ss_pred HHHHHHHHHHHHHHhhc
Confidence 766655 7888888654
No 231
>COG4235 Cytochrome c biogenesis factor [Posttranslational modification, protein turnover, chaperones]
Probab=94.82 E-value=0.85 Score=45.28 Aligned_cols=102 Identities=22% Similarity=0.192 Sum_probs=68.8
Q ss_pred CHHHHHHHHHHHHccCCHHHHHHHHHHhHHhhCCCCChHHHHHHHHHHhhcC---CHHHHHHHHHhCcC-CC-CHHHHHH
Q 003584 537 DYITFVGLLFACSHAGLAENARWYFESMDKVYGIKPGPDHYACMIDLLGRSG---KLIEAKALLDQMVG-EP-DATVWKA 611 (809)
Q Consensus 537 d~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~~~~~~~li~~~~~~g---~~~eA~~~~~~m~~-~p-~~~~~~~ 611 (809)
|...|..|..+|...|+.+.|...|....+- ..++...+..+..++..+. ...++.++|+++.. +| |+.+..-
T Consensus 155 d~egW~~Lg~~ym~~~~~~~A~~AY~~A~rL--~g~n~~~~~g~aeaL~~~a~~~~ta~a~~ll~~al~~D~~~iral~l 232 (287)
T COG4235 155 DAEGWDLLGRAYMALGRASDALLAYRNALRL--AGDNPEILLGLAEALYYQAGQQMTAKARALLRQALALDPANIRALSL 232 (287)
T ss_pred CchhHHHHHHHHHHhcchhHHHHHHHHHHHh--CCCCHHHHHHHHHHHHHhcCCcccHHHHHHHHHHHhcCCccHHHHHH
Confidence 4457777777777777777777777766542 2234445555555444332 34567788887774 34 4557777
Q ss_pred HHHHHHhcCChhHHHHHHHHHhccCCCCC
Q 003584 612 LLSACRVHGDLELGERAANNLFELEPMNA 640 (809)
Q Consensus 612 ll~a~~~~g~~~~A~~~~~~~~~~~p~~~ 640 (809)
|..++...|++.+|...++.|+++.|.+.
T Consensus 233 LA~~afe~g~~~~A~~~Wq~lL~~lp~~~ 261 (287)
T COG4235 233 LAFAAFEQGDYAEAAAAWQMLLDLLPADD 261 (287)
T ss_pred HHHHHHHcccHHHHHHHHHHHHhcCCCCC
Confidence 77888999999999999999998877654
No 232
>KOG2114 consensus Vacuolar assembly/sorting protein PEP5/VPS11 [Intracellular trafficking, secretion, and vesicular transport]
Probab=94.82 E-value=9.3 Score=43.44 Aligned_cols=115 Identities=12% Similarity=0.045 Sum_probs=65.1
Q ss_pred HHHhhhcCCChhHHHHHhhhCCCCCCcccHHHHH----HHHhhCCChHHHHHHHHHHHHCCCCCCcchHHHHHHHHhccC
Q 003584 174 LVDMYAKCKCIFEAEYLFKMFPDGKNHVAWTTMI----TGYSQNGYGFKAIECFRDMRVEGVESNQFTFPSILTACAAVS 249 (809)
Q Consensus 174 li~~y~~~g~~~~A~~~f~~~~~~~~~~~~~~li----~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~~~~~~~ 249 (809)
-+++..+...++-|..+-+.-.. |...-..+. +-+.+.|++++|.+.|-+-... +.| ..++.-+-...
T Consensus 340 kL~iL~kK~ly~~Ai~LAk~~~~--d~d~~~~i~~kYgd~Ly~Kgdf~~A~~qYI~tI~~-le~-----s~Vi~kfLdaq 411 (933)
T KOG2114|consen 340 KLDILFKKNLYKVAINLAKSQHL--DEDTLAEIHRKYGDYLYGKGDFDEATDQYIETIGF-LEP-----SEVIKKFLDAQ 411 (933)
T ss_pred HHHHHHHhhhHHHHHHHHHhcCC--CHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHccc-CCh-----HHHHHHhcCHH
Confidence 34444555555555555544332 222222222 3345678888888877665422 222 23444444444
Q ss_pred ChHHHHHHHHHHHHhCCCCchhHHHHHHHHHHhCCChHHHHHHHhccC
Q 003584 250 ARDFGAQVHGCILSSGFEANVYVQSALIDMYAKCGDLDSARRLLEYSE 297 (809)
Q Consensus 250 ~~~~a~~~~~~~~~~g~~~~~~~~~~Li~~y~~~g~~~~A~~~f~~~~ 297 (809)
.+..--.+++.+.+.|+. +...-+.|+..|.|.++.++-.++.+...
T Consensus 412 ~IknLt~YLe~L~~~gla-~~dhttlLLncYiKlkd~~kL~efI~~~~ 458 (933)
T KOG2114|consen 412 RIKNLTSYLEALHKKGLA-NSDHTTLLLNCYIKLKDVEKLTEFISKCD 458 (933)
T ss_pred HHHHHHHHHHHHHHcccc-cchhHHHHHHHHHHhcchHHHHHHHhcCC
Confidence 555555666777777743 44455678888888888887777766555
No 233
>PLN03098 LPA1 LOW PSII ACCUMULATION1; Provisional
Probab=94.81 E-value=0.16 Score=53.54 Aligned_cols=62 Identities=8% Similarity=0.059 Sum_probs=39.0
Q ss_pred hHHHHHHHHHHhhcCCHHHHHHHHHhCcC-CCCH----HHHHHHHHHHHhcCChhHHHHHHHHHhcc
Q 003584 574 PDHYACMIDLLGRSGKLIEAKALLDQMVG-EPDA----TVWKALLSACRVHGDLELGERAANNLFEL 635 (809)
Q Consensus 574 ~~~~~~li~~~~~~g~~~eA~~~~~~m~~-~p~~----~~~~~ll~a~~~~g~~~~A~~~~~~~~~~ 635 (809)
...+..+..+|.+.|++++|+..|++... .|+. .+|..+..+|...|+.++|+..+++++++
T Consensus 75 a~a~~NLG~AL~~lGryeEAIa~f~rALeL~Pd~aeA~~A~yNLAcaya~LGr~dEAla~LrrALel 141 (453)
T PLN03098 75 AEDAVNLGLSLFSKGRVKDALAQFETALELNPNPDEAQAAYYNKACCHAYREEGKKAADCLRTALRD 141 (453)
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Confidence 35555666666666666666666665443 3443 24677777777777777777777777665
No 234
>PF13525 YfiO: Outer membrane lipoprotein; PDB: 3TGO_A 3Q5M_A 2YHC_A.
Probab=94.77 E-value=1 Score=43.37 Aligned_cols=140 Identities=19% Similarity=0.223 Sum_probs=75.4
Q ss_pred HHHHHhcCChHHHHHHHHHHHHCCCC-CC-HHHHHHHHHHHHccCCHHHHHHHHHHhHHhhCCCCChHHHHHHHHHHhhc
Q 003584 510 IMGCAQNGKGKEALQFYDQMLARGTK-PD-YITFVGLLFACSHAGLAENARWYFESMDKVYGIKPGPDHYACMIDLLGRS 587 (809)
Q Consensus 510 i~~~~~~g~~~~A~~l~~~m~~~g~~-pd-~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~~~~~~~li~~~~~~ 587 (809)
...+.+.|++.+|...|+++...-.. |- ......++.++.+.|++++|...++...+.+.-.|... +.....+++..
T Consensus 12 a~~~~~~g~y~~Ai~~f~~l~~~~P~s~~a~~A~l~la~a~y~~~~y~~A~~~~~~fi~~yP~~~~~~-~A~Y~~g~~~~ 90 (203)
T PF13525_consen 12 ALEALQQGDYEEAIKLFEKLIDRYPNSPYAPQAQLMLAYAYYKQGDYEEAIAAYERFIKLYPNSPKAD-YALYMLGLSYY 90 (203)
T ss_dssp HHHHHHCT-HHHHHHHHHHHHHH-TTSTTHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHH-TT-TTHH-HHHHHHHHHHH
T ss_pred HHHHHHCCCHHHHHHHHHHHHHHCCCChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCCcchh-hHHHHHHHHHH
Confidence 34456778888888888888764211 11 12455667777788888888888888777654444331 11111111100
Q ss_pred CCHHHHHHHHHhCcCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHhccCCCCCc-----------------cHHhHhhhh
Q 003584 588 GKLIEAKALLDQMVGEPDATVWKALLSACRVHGDLELGERAANNLFELEPMNAM-----------------PYVQLSNMY 650 (809)
Q Consensus 588 g~~~eA~~~~~~m~~~p~~~~~~~ll~a~~~~g~~~~A~~~~~~~~~~~p~~~~-----------------~~~~l~~~~ 650 (809)
...... + ......+....|...++.+++.-|+++- .-..++..|
T Consensus 91 ~~~~~~---~----------------~~~~D~~~~~~A~~~~~~li~~yP~S~y~~~A~~~l~~l~~~la~~e~~ia~~Y 151 (203)
T PF13525_consen 91 KQIPGI---L----------------RSDRDQTSTRKAIEEFEELIKRYPNSEYAEEAKKRLAELRNRLAEHELYIARFY 151 (203)
T ss_dssp HHHHHH---H-----------------TT---HHHHHHHHHHHHHHHH-TTSTTHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HhCccc---h----------------hcccChHHHHHHHHHHHHHHHHCcCchHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 000000 0 1112223345566666666666665442 223567889
Q ss_pred hhcCChhHHHHHHHHHHhC
Q 003584 651 STAGKWEDAARVRKLMKSR 669 (809)
Q Consensus 651 ~~~g~~~~A~~~~~~m~~~ 669 (809)
.+.|.+..|..-++.+.+.
T Consensus 152 ~~~~~y~aA~~r~~~v~~~ 170 (203)
T PF13525_consen 152 YKRGKYKAAIIRFQYVIEN 170 (203)
T ss_dssp HCTT-HHHHHHHHHHHHHH
T ss_pred HHcccHHHHHHHHHHHHHH
Confidence 9999999999999998765
No 235
>PF13525 YfiO: Outer membrane lipoprotein; PDB: 3TGO_A 3Q5M_A 2YHC_A.
Probab=94.66 E-value=0.88 Score=43.80 Aligned_cols=162 Identities=17% Similarity=0.133 Sum_probs=93.0
Q ss_pred HHHHhcCCHHHHHHHHHhcCC--CC----eeechHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHH--HHHHHHHHHHcc
Q 003584 480 LVYAKCGCINDANRVFDSMHT--RD----VITWTALIMGCAQNGKGKEALQFYDQMLARGTKPDYI--TFVGLLFACSHA 551 (809)
Q Consensus 480 ~~y~k~g~~~~A~~~~~~~~~--~~----~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~pd~~--t~~~ll~a~~~~ 551 (809)
..+...|++++|.+.|+.+.. |+ ..+.-.++.++.+.|++++|...|++.++. -|+.. -+...+.+.+.-
T Consensus 13 ~~~~~~g~y~~Ai~~f~~l~~~~P~s~~a~~A~l~la~a~y~~~~y~~A~~~~~~fi~~--yP~~~~~~~A~Y~~g~~~~ 90 (203)
T PF13525_consen 13 LEALQQGDYEEAIKLFEKLIDRYPNSPYAPQAQLMLAYAYYKQGDYEEAIAAYERFIKL--YPNSPKADYALYMLGLSYY 90 (203)
T ss_dssp HHHHHCT-HHHHHHHHHHHHHH-TTSTTHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHH---TT-TTHHHHHHHHHHHHH
T ss_pred HHHHHCCCHHHHHHHHHHHHHHCCCChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH--CCCCcchhhHHHHHHHHHH
Confidence 345567888888888887762 22 124455777888899999999999998874 44432 222222222211
Q ss_pred -------------CCHHHHHHHHHHhHHhhCCCCChHHHHHHHHHHhhcCCHHHHHHHHHhCcCCCCHHHHHHHHHHHHh
Q 003584 552 -------------GLAENARWYFESMDKVYGIKPGPDHYACMIDLLGRSGKLIEAKALLDQMVGEPDATVWKALLSACRV 618 (809)
Q Consensus 552 -------------g~~~~a~~~~~~m~~~~~~~p~~~~~~~li~~~~~~g~~~eA~~~~~~m~~~p~~~~~~~ll~a~~~ 618 (809)
+...+|...|+.+ +.-|-......+|...+..+...--. ---.+..-|.+
T Consensus 91 ~~~~~~~~~~~D~~~~~~A~~~~~~l----------------i~~yP~S~y~~~A~~~l~~l~~~la~-~e~~ia~~Y~~ 153 (203)
T PF13525_consen 91 KQIPGILRSDRDQTSTRKAIEEFEEL----------------IKRYPNSEYAEEAKKRLAELRNRLAE-HELYIARFYYK 153 (203)
T ss_dssp HHHHHHH-TT---HHHHHHHHHHHHH----------------HHH-TTSTTHHHHHHHHHHHHHHHHH-HHHHHHHHHHC
T ss_pred HhCccchhcccChHHHHHHHHHHHHH----------------HHHCcCchHHHHHHHHHHHHHHHHHH-HHHHHHHHHHH
Confidence 1223344444443 44444445555555554443311000 11124566788
Q ss_pred cCChhHHHHHHHHHhccCCCCCc---cHHhHhhhhhhcCChhHHH
Q 003584 619 HGDLELGERAANNLFELEPMNAM---PYVQLSNMYSTAGKWEDAA 660 (809)
Q Consensus 619 ~g~~~~A~~~~~~~~~~~p~~~~---~~~~l~~~~~~~g~~~~A~ 660 (809)
.|.+..|..-++.+++.-|+.+. +...++.+|.+.|..+.|.
T Consensus 154 ~~~y~aA~~r~~~v~~~yp~t~~~~~al~~l~~~y~~l~~~~~a~ 198 (203)
T PF13525_consen 154 RGKYKAAIIRFQYVIENYPDTPAAEEALARLAEAYYKLGLKQAAD 198 (203)
T ss_dssp TT-HHHHHHHHHHHHHHSTTSHHHHHHHHHHHHHHHHTT-HHHHH
T ss_pred cccHHHHHHHHHHHHHHCCCCchHHHHHHHHHHHHHHhCChHHHH
Confidence 88999999999999988887544 4567788888888888543
No 236
>PRK11906 transcriptional regulator; Provisional
Probab=94.64 E-value=1.7 Score=46.11 Aligned_cols=158 Identities=15% Similarity=0.121 Sum_probs=106.4
Q ss_pred eec--hHHHHHHHhc-----CChHHHHHHHHHHHH-CCCCCCHH-HHHHHHHHHHc---------cCCHHHHHHHHHHhH
Q 003584 504 ITW--TALIMGCAQN-----GKGKEALQFYDQMLA-RGTKPDYI-TFVGLLFACSH---------AGLAENARWYFESMD 565 (809)
Q Consensus 504 ~~~--~~li~~~~~~-----g~~~~A~~l~~~m~~-~g~~pd~~-t~~~ll~a~~~---------~g~~~~a~~~~~~m~ 565 (809)
..| ..++.|.... -..+.|+.+|.+... +.+.|+.. .|..+..++.. .....+|.+.-+...
T Consensus 252 ~a~~~d~ylrg~~~~~~~t~~~~~~Al~lf~ra~~~~~ldp~~a~a~~~lA~~h~~~~~~g~~~~~~~~~~a~~~A~rAv 331 (458)
T PRK11906 252 NHYLSDEMLAGKKELYDFTPESIYRAMTIFDRLQNKSDIQTLKTECYCLLAECHMSLALHGKSELELAAQKALELLDYVS 331 (458)
T ss_pred cchhhHHHHHHHHHhhccCHHHHHHHHHHHHHHhhcccCCcccHHHHHHHHHHHHHHHHhcCCCchHHHHHHHHHHHHHH
Confidence 566 5566655442 134678889999882 23677754 44444333221 223456666665555
Q ss_pred HhhCCCC-ChHHHHHHHHHHhhcCCHHHHHHHHHhCcC-CCC-HHHHHHHHHHHHhcCChhHHHHHHHHHhccCCCCCcc
Q 003584 566 KVYGIKP-GPDHYACMIDLLGRSGKLIEAKALLDQMVG-EPD-ATVWKALLSACRVHGDLELGERAANNLFELEPMNAMP 642 (809)
Q Consensus 566 ~~~~~~p-~~~~~~~li~~~~~~g~~~eA~~~~~~m~~-~p~-~~~~~~ll~a~~~~g~~~~A~~~~~~~~~~~p~~~~~ 642 (809)
.+.| |......+..++.-.|+++.|...|++... .|| +.+|......+.-.|+.++|.+.++++++++|....+
T Consensus 332 ---eld~~Da~a~~~~g~~~~~~~~~~~a~~~f~rA~~L~Pn~A~~~~~~~~~~~~~G~~~~a~~~i~~alrLsP~~~~~ 408 (458)
T PRK11906 332 ---DITTVDGKILAIMGLITGLSGQAKVSHILFEQAKIHSTDIASLYYYRALVHFHNEKIEEARICIDKSLQLEPRRRKA 408 (458)
T ss_pred ---hcCCCCHHHHHHHHHHHHhhcchhhHHHHHHHHhhcCCccHHHHHHHHHHHHHcCCHHHHHHHHHHHhccCchhhHH
Confidence 3444 556666777777888889999999998875 465 4588888888999999999999999999999976554
Q ss_pred HH--hHhhhhhhcCChhHHHHHHHH
Q 003584 643 YV--QLSNMYSTAGKWEDAARVRKL 665 (809)
Q Consensus 643 ~~--~l~~~~~~~g~~~~A~~~~~~ 665 (809)
-. ..+++|+..+ .++|.+++-+
T Consensus 409 ~~~~~~~~~~~~~~-~~~~~~~~~~ 432 (458)
T PRK11906 409 VVIKECVDMYVPNP-LKNNIKLYYK 432 (458)
T ss_pred HHHHHHHHHHcCCc-hhhhHHHHhh
Confidence 33 3445676655 4666666543
No 237
>PF00515 TPR_1: Tetratricopeptide repeat; InterPro: IPR001440 The tetratrico peptide repeat (TPR) is a structural motif present in a wide range of proteins [, , ]. It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. The X-ray structure of a domain containing three TPRs from protein phosphatase 5 revealed that TPR adopts a helix-turn-helix arrangement, with adjacent TPR motifs packing in a parallel fashion, resulting in a spiral of repeating anti-parallel alpha-helices []. The two helices are denoted helix A and helix B. The packing angle between helix A and helix B is ~24 degrees; within a single TPR and generates a right-handed superhelical shape. Helix A interacts with helix B and with helix A' of the next TPR. Two protein surfaces are generated: the inner concave surface is contributed to mainly by residue on helices A, and the other surface presents residues from both helices A and B. ; GO: 0005515 protein binding; PDB: 3SF4_C 2LNI_A 1ELW_A 2C0M_A 1FCH_B 3R9A_B 2J9Q_A 2C0L_A 1KT1_A 3FWV_A ....
Probab=94.59 E-value=0.049 Score=34.74 Aligned_cols=33 Identities=27% Similarity=0.242 Sum_probs=27.8
Q ss_pred HHHHHHHHHHHhcCChhHHHHHHHHHhccCCCC
Q 003584 607 TVWKALLSACRVHGDLELGERAANNLFELEPMN 639 (809)
Q Consensus 607 ~~~~~ll~a~~~~g~~~~A~~~~~~~~~~~p~~ 639 (809)
.+|..++..+...|++++|+..++++++++|++
T Consensus 2 ~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~ 34 (34)
T PF00515_consen 2 EAYYNLGNAYFQLGDYEEALEYYQRALELDPDN 34 (34)
T ss_dssp HHHHHHHHHHHHTT-HHHHHHHHHHHHHHSTTH
T ss_pred HHHHHHHHHHHHhCCchHHHHHHHHHHHHCcCC
Confidence 478888999999999999999999999998863
No 238
>COG0457 NrfG FOG: TPR repeat [General function prediction only]
Probab=94.54 E-value=4.9 Score=38.94 Aligned_cols=164 Identities=21% Similarity=0.167 Sum_probs=114.1
Q ss_pred ChhHHhHHHHHHHhcCCHHHHHHHHHhcCC--CCe-eechHHHH-HHHhcCChHHHHHHHHHHHHCCCCC----CHHHHH
Q 003584 471 SLSVDNSLVLVYAKCGCINDANRVFDSMHT--RDV-ITWTALIM-GCAQNGKGKEALQFYDQMLARGTKP----DYITFV 542 (809)
Q Consensus 471 ~~~~~~~li~~y~k~g~~~~A~~~~~~~~~--~~~-~~~~~li~-~~~~~g~~~~A~~l~~~m~~~g~~p----d~~t~~ 542 (809)
....+..+...+...+.+..+.+.+..... ++. ..+..... .+...|++++|...|++... ..| ....+.
T Consensus 94 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~--~~~~~~~~~~~~~ 171 (291)
T COG0457 94 LAEALLNLGLLLEALGKYEEALELLEKALALDPDPDLAEALLALGALYELGDYEEALELYEKALE--LDPELNELAEALL 171 (291)
T ss_pred hHHHHHHHHHHHHHHhhHHHHHHHHHHHHcCCCCcchHHHHHHHHHHHHcCCHHHHHHHHHHHHh--cCCCccchHHHHH
Confidence 344444555556666667777777776653 222 22333333 67888999999999998855 343 233444
Q ss_pred HHHHHHHccCCHHHHHHHHHHhHHhhCCCC-ChHHHHHHHHHHhhcCCHHHHHHHHHhCcC-CCC-HHHHHHHHHHHHhc
Q 003584 543 GLLFACSHAGLAENARWYFESMDKVYGIKP-GPDHYACMIDLLGRSGKLIEAKALLDQMVG-EPD-ATVWKALLSACRVH 619 (809)
Q Consensus 543 ~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p-~~~~~~~li~~~~~~g~~~eA~~~~~~m~~-~p~-~~~~~~ll~a~~~~ 619 (809)
.....+...++.+++...+...... ... ....+..+...+...+.+++|...+..... .|+ ...+..+...+...
T Consensus 172 ~~~~~~~~~~~~~~a~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 249 (291)
T COG0457 172 ALGALLEALGRYEEALELLEKALKL--NPDDDAEALLNLGLLYLKLGKYEEALEYYEKALELDPDNAEALYNLALLLLEL 249 (291)
T ss_pred HhhhHHHHhcCHHHHHHHHHHHHhh--CcccchHHHHHhhHHHHHcccHHHHHHHHHHHHhhCcccHHHHhhHHHHHHHc
Confidence 4555577788999999999887753 222 367777888888999999999999988775 344 45666666666677
Q ss_pred CChhHHHHHHHHHhccCCC
Q 003584 620 GDLELGERAANNLFELEPM 638 (809)
Q Consensus 620 g~~~~A~~~~~~~~~~~p~ 638 (809)
++.+.+...+++.++..|.
T Consensus 250 ~~~~~~~~~~~~~~~~~~~ 268 (291)
T COG0457 250 GRYEEALEALEKALELDPD 268 (291)
T ss_pred CCHHHHHHHHHHHHHhCcc
Confidence 7899999999999999886
No 239
>PF04184 ST7: ST7 protein; InterPro: IPR007311 The ST7 (for suppression of tumorigenicity 7) protein is thought to be a tumour suppressor gene. The molecular function of this protein is uncertain.
Probab=94.37 E-value=1.2 Score=47.37 Aligned_cols=115 Identities=13% Similarity=0.076 Sum_probs=68.7
Q ss_pred HHHHHHHHHHHHhcCChhHHHHHHHHHhccCCC--CCccHHhHhhhhhhcCChhHHHHHHHHHHhCCCccCCceeEEEEC
Q 003584 606 ATVWKALLSACRVHGDLELGERAANNLFELEPM--NAMPYVQLSNMYSTAGKWEDAARVRKLMKSRGIRKEPGCSWVETN 683 (809)
Q Consensus 606 ~~~~~~ll~a~~~~g~~~~A~~~~~~~~~~~p~--~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~s~~~~~ 683 (809)
..+-..|...+++.|+.++|++.++.+++..|. +-..+..|+..|...+.+.++..++.+--+....|....+|..-.
T Consensus 259 ~y~KrRLAmCarklGr~~EAIk~~rdLlke~p~~~~l~IrenLie~LLelq~Yad~q~lL~kYdDi~lpkSAti~YTaAL 338 (539)
T PF04184_consen 259 VYAKRRLAMCARKLGRLREAIKMFRDLLKEFPNLDNLNIRENLIEALLELQAYADVQALLAKYDDISLPKSATICYTAAL 338 (539)
T ss_pred hhhHHHHHHHHHHhCChHHHHHHHHHHHhhCCccchhhHHHHHHHHHHhcCCHHHHHHHHHHhccccCCchHHHHHHHHH
Confidence 334455677778888888888888888877664 445677888888888888888888877654444444433331100
Q ss_pred CEEEEEEeCCCCCcc-------hHHHHHHHHHHHHHHHHcCCccCC
Q 003584 684 SQVHIFISEDRGHPL-------RTDIYSKIDEIMLLIKEAGYVPDM 722 (809)
Q Consensus 684 ~~~~~~~~~~~~~~~-------~~~i~~~l~~l~~~~~~~g~~~~~ 722 (809)
-+ .-..+|+..|. .......++-+.+.++..+++|+=
T Consensus 339 Lk--aRav~d~fs~e~a~rRGls~ae~~aveAi~RAvefNPHVp~Y 382 (539)
T PF04184_consen 339 LK--ARAVGDKFSPEAASRRGLSPAEMNAVEAIHRAVEFNPHVPKY 382 (539)
T ss_pred HH--HHhhccccCchhhhhcCCChhHHHHHHHHHHHHHhCCCCchh
Confidence 00 00012221121 122233456677778888888853
No 240
>PF07719 TPR_2: Tetratricopeptide repeat; InterPro: IPR013105 The tetratrico peptide repeat (TPR) is a structural motif present in a wide range of proteins [, , ]. It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. This repeat includes outlying Tetratricopeptide-like repeats (TPR) that are not matched by IPR001440 from INTERPRO.; PDB: 1XNF_B 3Q15_A 4ABN_A 1OUV_A 3U4T_A 3MA5_C 2KCV_A 2KCL_A 2XEV_A 3NF1_A ....
Probab=94.37 E-value=0.081 Score=33.61 Aligned_cols=33 Identities=27% Similarity=0.322 Sum_probs=27.0
Q ss_pred HHHHHHHHHHHhcCChhHHHHHHHHHhccCCCC
Q 003584 607 TVWKALLSACRVHGDLELGERAANNLFELEPMN 639 (809)
Q Consensus 607 ~~~~~ll~a~~~~g~~~~A~~~~~~~~~~~p~~ 639 (809)
..|..+...+...|++++|++.++++++++|+|
T Consensus 2 ~~~~~lg~~~~~~~~~~~A~~~~~~al~l~p~~ 34 (34)
T PF07719_consen 2 EAWYYLGQAYYQLGNYEEAIEYFEKALELDPNN 34 (34)
T ss_dssp HHHHHHHHHHHHTT-HHHHHHHHHHHHHHSTTS
T ss_pred HHHHHHHHHHHHhCCHHHHHHHHHHHHHHCcCC
Confidence 467778888899999999999999999988864
No 241
>PF04053 Coatomer_WDAD: Coatomer WD associated region ; InterPro: IPR006692 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the WD-associated region found in coatomer subunits alpha, beta and beta' subunits. The alpha-subunit (RET1P) of the coatomer complex in Saccharomyces cerevisiae (Baker's yeast), participates in membrane transport between the endoplasmic reticulum and Golgi apparatus. The protein contains six WD-40 repeat motifs in its N-terminal region []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006886 intracellular protein transport, 0016192 vesicle-mediated transport, 0030117 membrane coat; PDB: 3MKQ_B.
Probab=94.28 E-value=0.35 Score=52.26 Aligned_cols=133 Identities=21% Similarity=0.260 Sum_probs=90.7
Q ss_pred HHHhcCChHHHHHHHHH-HHHCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHhHHhhCCCCChHHHHHHHHHHhhcCCH
Q 003584 512 GCAQNGKGKEALQFYDQ-MLARGTKPDYITFVGLLFACSHAGLAENARWYFESMDKVYGIKPGPDHYACMIDLLGRSGKL 590 (809)
Q Consensus 512 ~~~~~g~~~~A~~l~~~-m~~~g~~pd~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~~~~~~~li~~~~~~g~~ 590 (809)
....+|+++++.++... -.-..++ ..-...++.-+.+.|..+.|.++-..-..+ .++..+.|++
T Consensus 270 ~av~~~d~~~v~~~i~~~~ll~~i~--~~~~~~i~~fL~~~G~~e~AL~~~~D~~~r-------------FeLAl~lg~L 334 (443)
T PF04053_consen 270 TAVLRGDFEEVLRMIAASNLLPNIP--KDQGQSIARFLEKKGYPELALQFVTDPDHR-------------FELALQLGNL 334 (443)
T ss_dssp HHHHTT-HHH-----HHHHTGGG----HHHHHHHHHHHHHTT-HHHHHHHSS-HHHH-------------HHHHHHCT-H
T ss_pred HHHHcCChhhhhhhhhhhhhcccCC--hhHHHHHHHHHHHCCCHHHHHhhcCChHHH-------------hHHHHhcCCH
Confidence 34567888887776641 1111122 334667788888999999999876443322 4667789999
Q ss_pred HHHHHHHHhCcCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHhccCCCCCccHHhHhhhhhhcCChhHHHHHHHHHHhCC
Q 003584 591 IEAKALLDQMVGEPDATVWKALLSACRVHGDLELGERAANNLFELEPMNAMPYVQLSNMYSTAGKWEDAARVRKLMKSRG 670 (809)
Q Consensus 591 ~eA~~~~~~m~~~p~~~~~~~ll~a~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~ 670 (809)
+.|.++.++. ++...|..|......+|+++.|++++++. .-+..|+-+|...|+.+.-.++.+....+|
T Consensus 335 ~~A~~~a~~~---~~~~~W~~Lg~~AL~~g~~~lAe~c~~k~--------~d~~~L~lLy~~~g~~~~L~kl~~~a~~~~ 403 (443)
T PF04053_consen 335 DIALEIAKEL---DDPEKWKQLGDEALRQGNIELAEECYQKA--------KDFSGLLLLYSSTGDREKLSKLAKIAEERG 403 (443)
T ss_dssp HHHHHHCCCC---STHHHHHHHHHHHHHTTBHHHHHHHHHHC--------T-HHHHHHHHHHCT-HHHHHHHHHHHHHTT
T ss_pred HHHHHHHHhc---CcHHHHHHHHHHHHHcCCHHHHHHHHHhh--------cCccccHHHHHHhCCHHHHHHHHHHHHHcc
Confidence 9999987665 47889999999999999999999999964 457788889999999888777777766665
No 242
>COG5107 RNA14 Pre-mRNA 3'-end processing (cleavage and polyadenylation) factor [RNA processing and modification]
Probab=94.20 E-value=8.5 Score=40.40 Aligned_cols=145 Identities=19% Similarity=0.208 Sum_probs=98.3
Q ss_pred hhHHhHHHHHHHhcCCHHHHHHHHHhcC-----CCCeeechHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHH-HHH
Q 003584 472 LSVDNSLVLVYAKCGCINDANRVFDSMH-----TRDVITWTALIMGCAQNGKGKEALQFYDQMLARGTKPDYITFV-GLL 545 (809)
Q Consensus 472 ~~~~~~li~~y~k~g~~~~A~~~~~~~~-----~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~pd~~t~~-~ll 545 (809)
..++..+++.-.+..-++.|..+|-+.. .+++..++++|.-++ .|++.-|..+|+--... -||...|. -.+
T Consensus 397 t~v~C~~~N~v~r~~Gl~aaR~~F~k~rk~~~~~h~vyi~~A~~E~~~-~~d~~ta~~ifelGl~~--f~d~~~y~~kyl 473 (660)
T COG5107 397 TFVFCVHLNYVLRKRGLEAARKLFIKLRKEGIVGHHVYIYCAFIEYYA-TGDRATAYNIFELGLLK--FPDSTLYKEKYL 473 (660)
T ss_pred hhHHHHHHHHHHHHhhHHHHHHHHHHHhccCCCCcceeeeHHHHHHHh-cCCcchHHHHHHHHHHh--CCCchHHHHHHH
Confidence 4556666777777777888888887765 357778888887666 46777788888765552 56665443 456
Q ss_pred HHHHccCCHHHHHHHHHHhHHhhCCCCC--hHHHHHHHHHHhhcCCHHHHHHHHHhCcCC-CCHHHHHHHHHHHHhcCC
Q 003584 546 FACSHAGLAENARWYFESMDKVYGIKPG--PDHYACMIDLLGRSGKLIEAKALLDQMVGE-PDATVWKALLSACRVHGD 621 (809)
Q Consensus 546 ~a~~~~g~~~~a~~~~~~m~~~~~~~p~--~~~~~~li~~~~~~g~~~eA~~~~~~m~~~-p~~~~~~~ll~a~~~~g~ 621 (809)
.-+...++-+.|+.+|+....+ +..+ ...|..|++-=..-|++..+..+=+++... |...+...+.+-|....+
T Consensus 474 ~fLi~inde~naraLFetsv~r--~~~~q~k~iy~kmi~YEs~~G~lN~v~sLe~rf~e~~pQen~~evF~Sry~ik~d 550 (660)
T COG5107 474 LFLIRINDEENARALFETSVER--LEKTQLKRIYDKMIEYESMVGSLNNVYSLEERFRELVPQENLIEVFTSRYAIKAD 550 (660)
T ss_pred HHHHHhCcHHHHHHHHHHhHHH--HHHhhhhHHHHHHHHHHHhhcchHHHHhHHHHHHHHcCcHhHHHHHHHHHhhhcc
Confidence 6677788888888888855442 2333 567888888888889998888776666532 544454555555655443
No 243
>PF10300 DUF3808: Protein of unknown function (DUF3808); InterPro: IPR019412 This entry represents a family of proteins conserved from fungi to humans. In humans this protein is expressed in primary breast carcinomas but not in normal breast tissue, and has a putative eukaryotic RNP-1 RNA binding region and a candidate anchoring transmembrane domain. The human protein is coordinately regulated with oestrogen receptor, but is not necessarily oestradiol-responsive []. Members of this family carry a tetratricopeptide repeat (IPR013105 from INTERPRO) at their C terminus.
Probab=94.14 E-value=1.2 Score=49.04 Aligned_cols=160 Identities=13% Similarity=0.053 Sum_probs=105.1
Q ss_pred hHHHHHHHhcCChHHHHHHHHHHHHCC-CCCCH-----HHHHHHHHHHHc----cCCHHHHHHHHHHhHHhhCCCCChHH
Q 003584 507 TALIMGCAQNGKGKEALQFYDQMLARG-TKPDY-----ITFVGLLFACSH----AGLAENARWYFESMDKVYGIKPGPDH 576 (809)
Q Consensus 507 ~~li~~~~~~g~~~~A~~l~~~m~~~g-~~pd~-----~t~~~ll~a~~~----~g~~~~a~~~~~~m~~~~~~~p~~~~ 576 (809)
..++....-.|+-+.+++++.+..+.+ +.-.. .+|..++..+.. ....+.|.++++.+.+. -|+...
T Consensus 192 ~kll~~vGF~gdR~~GL~~L~~~~~~~~i~~~la~L~LL~y~~~~~~~~~~~~~~~~~~~a~~lL~~~~~~---yP~s~l 268 (468)
T PF10300_consen 192 LKLLSFVGFSGDRELGLRLLWEASKSENIRSPLAALVLLWYHLVVPSFLGIDGEDVPLEEAEELLEEMLKR---YPNSAL 268 (468)
T ss_pred HHHHhhcCcCCcHHHHHHHHHHHhccCCcchHHHHHHHHHHHHHHHHHcCCcccCCCHHHHHHHHHHHHHh---CCCcHH
Confidence 345555556677777777776655422 21111 123333333222 45678888888888765 367665
Q ss_pred HHHH-HHHHhhcCCHHHHHHHHHhCcCC------CCHHHHHHHHHHHHhcCChhHHHHHHHHHhccCCCCCccHH-hHhh
Q 003584 577 YACM-IDLLGRSGKLIEAKALLDQMVGE------PDATVWKALLSACRVHGDLELGERAANNLFELEPMNAMPYV-QLSN 648 (809)
Q Consensus 577 ~~~l-i~~~~~~g~~~eA~~~~~~m~~~------p~~~~~~~ll~a~~~~g~~~~A~~~~~~~~~~~p~~~~~~~-~l~~ 648 (809)
|... ...+...|++++|.+.|+++... -....+--+...+...+++++|...+.++.+...-+...|. ..+-
T Consensus 269 fl~~~gR~~~~~g~~~~Ai~~~~~a~~~q~~~~Ql~~l~~~El~w~~~~~~~w~~A~~~f~~L~~~s~WSka~Y~Y~~a~ 348 (468)
T PF10300_consen 269 FLFFEGRLERLKGNLEEAIESFERAIESQSEWKQLHHLCYFELAWCHMFQHDWEEAAEYFLRLLKESKWSKAFYAYLAAA 348 (468)
T ss_pred HHHHHHHHHHHhcCHHHHHHHHHHhccchhhHHhHHHHHHHHHHHHHHHHchHHHHHHHHHHHHhccccHHHHHHHHHHH
Confidence 5433 35677789999999999876531 23335556777888899999999999999997766555555 4466
Q ss_pred hhhhcCCh-------hHHHHHHHHHHhC
Q 003584 649 MYSTAGKW-------EDAARVRKLMKSR 669 (809)
Q Consensus 649 ~~~~~g~~-------~~A~~~~~~m~~~ 669 (809)
+|...|+. ++|.+++++....
T Consensus 349 c~~~l~~~~~~~~~~~~a~~l~~~vp~l 376 (468)
T PF10300_consen 349 CLLMLGREEEAKEHKKEAEELFRKVPKL 376 (468)
T ss_pred HHHhhccchhhhhhHHHHHHHHHHHHHH
Confidence 67788888 8888888877543
No 244
>PF13512 TPR_18: Tetratricopeptide repeat
Probab=94.02 E-value=0.76 Score=40.46 Aligned_cols=61 Identities=21% Similarity=0.185 Sum_probs=45.8
Q ss_pred HHHhhcCCHHHHHHHHHhCcCC-C----CHHHHHHHHHHHHhcCChhHHHHHHHHHhccCCCCCcc
Q 003584 582 DLLGRSGKLIEAKALLDQMVGE-P----DATVWKALLSACRVHGDLELGERAANNLFELEPMNAMP 642 (809)
Q Consensus 582 ~~~~~~g~~~eA~~~~~~m~~~-p----~~~~~~~ll~a~~~~g~~~~A~~~~~~~~~~~p~~~~~ 642 (809)
....+.|++++|.+.|+.+..+ | ...+--.|+.+|...|++++|...+++.+++.|.++.+
T Consensus 18 ~~~l~~~~Y~~A~~~le~L~~ryP~g~ya~qAqL~l~yayy~~~~y~~A~a~~~rFirLhP~hp~v 83 (142)
T PF13512_consen 18 QEALQKGNYEEAIKQLEALDTRYPFGEYAEQAQLDLAYAYYKQGDYEEAIAAYDRFIRLHPTHPNV 83 (142)
T ss_pred HHHHHhCCHHHHHHHHHHHHhcCCCCcccHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCCCc
Confidence 3345678888888888776642 2 23356678889999999999999999999999887653
No 245
>COG1729 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=93.86 E-value=0.49 Score=46.34 Aligned_cols=98 Identities=26% Similarity=0.268 Sum_probs=63.5
Q ss_pred chHHHHHHHhcCChHHHHHHHHHHHHCCCCCCH----HHHHHHHHHHHccCCHHHHHHHHHHhHHhhCCCCCh-HHHHHH
Q 003584 506 WTALIMGCAQNGKGKEALQFYDQMLARGTKPDY----ITFVGLLFACSHAGLAENARWYFESMDKVYGIKPGP-DHYACM 580 (809)
Q Consensus 506 ~~~li~~~~~~g~~~~A~~l~~~m~~~g~~pd~----~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~~-~~~~~l 580 (809)
|+.-+. +.+.|++.+|...|...++.. |+. ..+-.|..++...|++++|..+|..+.+.+.-.|.. +.+--|
T Consensus 145 Y~~A~~-~~ksgdy~~A~~~F~~fi~~Y--P~s~~~~nA~yWLGe~~y~qg~y~~Aa~~f~~~~k~~P~s~KApdallKl 221 (262)
T COG1729 145 YNAALD-LYKSGDYAEAEQAFQAFIKKY--PNSTYTPNAYYWLGESLYAQGDYEDAAYIFARVVKDYPKSPKAPDALLKL 221 (262)
T ss_pred HHHHHH-HHHcCCHHHHHHHHHHHHHcC--CCCcccchhHHHHHHHHHhcccchHHHHHHHHHHHhCCCCCCChHHHHHH
Confidence 444433 345677888888888877742 322 245567777777778888777777777766555543 666666
Q ss_pred HHHHhhcCCHHHHHHHHHhCcCC-CCH
Q 003584 581 IDLLGRSGKLIEAKALLDQMVGE-PDA 606 (809)
Q Consensus 581 i~~~~~~g~~~eA~~~~~~m~~~-p~~ 606 (809)
.....+.|+.++|...+++...+ |+.
T Consensus 222 g~~~~~l~~~d~A~atl~qv~k~YP~t 248 (262)
T COG1729 222 GVSLGRLGNTDEACATLQQVIKRYPGT 248 (262)
T ss_pred HHHHHHhcCHHHHHHHHHHHHHHCCCC
Confidence 67777777777777777766643 443
No 246
>COG3118 Thioredoxin domain-containing protein [Posttranslational modification, protein turnover, chaperones]
Probab=93.75 E-value=2.6 Score=41.84 Aligned_cols=119 Identities=18% Similarity=0.116 Sum_probs=49.6
Q ss_pred HHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHhHHhhCCCCChHHHHHHHHHHhhcCCHHH
Q 003584 513 CAQNGKGKEALQFYDQMLARGTKPDYITFVGLLFACSHAGLAENARWYFESMDKVYGIKPGPDHYACMIDLLGRSGKLIE 592 (809)
Q Consensus 513 ~~~~g~~~~A~~l~~~m~~~g~~pd~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~~~~~~~li~~~~~~g~~~e 592 (809)
....|+..+|..+|+...... +-+...-..+..++...|+++.|..++..+-.+ --.........-+..+.+.....+
T Consensus 144 ~~~~e~~~~a~~~~~~al~~~-~~~~~~~~~la~~~l~~g~~e~A~~iL~~lP~~-~~~~~~~~l~a~i~ll~qaa~~~~ 221 (304)
T COG3118 144 LIEAEDFGEAAPLLKQALQAA-PENSEAKLLLAECLLAAGDVEAAQAILAALPLQ-AQDKAAHGLQAQIELLEQAAATPE 221 (304)
T ss_pred hhhccchhhHHHHHHHHHHhC-cccchHHHHHHHHHHHcCChHHHHHHHHhCccc-chhhHHHHHHHHHHHHHHHhcCCC
Confidence 345556666666666555531 112233344455555555555555555443211 000000111122333444444443
Q ss_pred HHHHHHhCcCCC-CHHHHHHHHHHHHhcCChhHHHHHHHHHh
Q 003584 593 AKALLDQMVGEP-DATVWKALLSACRVHGDLELGERAANNLF 633 (809)
Q Consensus 593 A~~~~~~m~~~p-~~~~~~~ll~a~~~~g~~~~A~~~~~~~~ 633 (809)
..++-++.-..| |...--.|...+...|+.+.|.+.+-.++
T Consensus 222 ~~~l~~~~aadPdd~~aa~~lA~~~~~~g~~e~Ale~Ll~~l 263 (304)
T COG3118 222 IQDLQRRLAADPDDVEAALALADQLHLVGRNEAALEHLLALL 263 (304)
T ss_pred HHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 333333333333 33344444444455555555444443333
No 247
>smart00299 CLH Clathrin heavy chain repeat homology.
Probab=93.61 E-value=2.1 Score=38.24 Aligned_cols=66 Identities=18% Similarity=0.195 Sum_probs=34.6
Q ss_pred HHHHHHHHHHHccCCHHHHHHHHHHhHHhhCCCCChHHHHHHHHHHhhc-CCHHHHHHHHHhCcCCCCHHHHHHHHHHHH
Q 003584 539 ITFVGLLFACSHAGLAENARWYFESMDKVYGIKPGPDHYACMIDLLGRS-GKLIEAKALLDQMVGEPDATVWKALLSACR 617 (809)
Q Consensus 539 ~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~~~~~~~li~~~~~~-g~~~eA~~~~~~m~~~p~~~~~~~ll~a~~ 617 (809)
.....++..|.+.+.++++..++..+.. |...++.+... ++.+.|.+++.+- .++..|..++..+.
T Consensus 70 yd~~~~~~~c~~~~l~~~~~~l~~k~~~----------~~~Al~~~l~~~~d~~~a~~~~~~~---~~~~lw~~~~~~~l 136 (140)
T smart00299 70 YDIEKVGKLCEKAKLYEEAVELYKKDGN----------FKDAIVTLIEHLGNYEKAIEYFVKQ---NNPELWAEVLKALL 136 (140)
T ss_pred CCHHHHHHHHHHcCcHHHHHHHHHhhcC----------HHHHHHHHHHcccCHHHHHHHHHhC---CCHHHHHHHHHHHH
Confidence 3344455566666666666666544421 12223333333 6677777776652 25556666665554
No 248
>PF03704 BTAD: Bacterial transcriptional activator domain; InterPro: IPR005158 Found in the DNRI/REDD/AFSR family of regulators, this region of AFSR (P25941 from SWISSPROT) along with the C-terminal region is capable of independently directing actinorhodin production. It is important for the formation of secondary metabolites.; PDB: 2FF4_B 2FEZ_A.
Probab=93.43 E-value=0.61 Score=42.14 Aligned_cols=69 Identities=25% Similarity=0.302 Sum_probs=38.7
Q ss_pred hHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHhH----HhhCCCCChHH
Q 003584 507 TALIMGCAQNGKGKEALQFYDQMLARGTKPDYITFVGLLFACSHAGLAENARWYFESMD----KVYGIKPGPDH 576 (809)
Q Consensus 507 ~~li~~~~~~g~~~~A~~l~~~m~~~g~~pd~~t~~~ll~a~~~~g~~~~a~~~~~~m~----~~~~~~p~~~~ 576 (809)
..++..+...|++++|+.+.+++.... +-|...+..++.++...|+..+|.++|+.+. +..|+.|+..+
T Consensus 66 ~~l~~~~~~~~~~~~a~~~~~~~l~~d-P~~E~~~~~lm~~~~~~g~~~~A~~~Y~~~~~~l~~elg~~Ps~~~ 138 (146)
T PF03704_consen 66 ERLAEALLEAGDYEEALRLLQRALALD-PYDEEAYRLLMRALAAQGRRAEALRVYERYRRRLREELGIEPSPET 138 (146)
T ss_dssp HHHHHHHHHTT-HHHHHHHHHHHHHHS-TT-HHHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHHHHS----HHH
T ss_pred HHHHHHHHhccCHHHHHHHHHHHHhcC-CCCHHHHHHHHHHHHHCcCHHHHHHHHHHHHHHHHHHhCcCcCHHH
Confidence 344555666777777777777776641 3345567777777777777777777766542 34577776654
No 249
>KOG1941 consensus Acetylcholine receptor-associated protein of the synapse (rapsyn) [Extracellular structures]
Probab=93.38 E-value=0.41 Score=48.19 Aligned_cols=123 Identities=15% Similarity=0.053 Sum_probs=68.2
Q ss_pred HHHHHHHccCCHHHHHHHHHHhHHhhCCCC----ChHHHHHHHHHHhhcCCHHHHHHHHHhCcC-----C-CCH------
Q 003584 543 GLLFACSHAGLAENARWYFESMDKVYGIKP----GPDHYACMIDLLGRSGKLIEAKALLDQMVG-----E-PDA------ 606 (809)
Q Consensus 543 ~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p----~~~~~~~li~~~~~~g~~~eA~~~~~~m~~-----~-p~~------ 606 (809)
++..|....+.++++.+.|+...+--.-.. ...+|..|...|++..++++|.-+..+... . .|.
T Consensus 127 ~~~~Ahlgls~fq~~Lesfe~A~~~A~~~~D~~LElqvcv~Lgslf~~l~D~~Kal~f~~kA~~lv~s~~l~d~~~kyr~ 206 (518)
T KOG1941|consen 127 SMGNAHLGLSVFQKALESFEKALRYAHNNDDAMLELQVCVSLGSLFAQLKDYEKALFFPCKAAELVNSYGLKDWSLKYRA 206 (518)
T ss_pred hHHHHhhhHHHHHHHHHHHHHHHHHhhccCCceeeeehhhhHHHHHHHHHhhhHHhhhhHhHHHHHHhcCcCchhHHHHH
Confidence 344555555667777777765543211111 124666777777777777776655544331 0 111
Q ss_pred HHHHHHHHHHHhcCChhHHHHHHHHHhcc--CCCC----CccHHhHhhhhhhcCChhHHHHHHHH
Q 003584 607 TVWKALLSACRVHGDLELGERAANNLFEL--EPMN----AMPYVQLSNMYSTAGKWEDAARVRKL 665 (809)
Q Consensus 607 ~~~~~ll~a~~~~g~~~~A~~~~~~~~~~--~p~~----~~~~~~l~~~~~~~g~~~~A~~~~~~ 665 (809)
.+.--|.-+++..|..-.|.+..+++.++ ...| ......++++|...|+.|.|..-++.
T Consensus 207 ~~lyhmaValR~~G~LgdA~e~C~Ea~klal~~Gdra~~arc~~~~aDIyR~~gd~e~af~rYe~ 271 (518)
T KOG1941|consen 207 MSLYHMAVALRLLGRLGDAMECCEEAMKLALQHGDRALQARCLLCFADIYRSRGDLERAFRRYEQ 271 (518)
T ss_pred HHHHHHHHHHHHhcccccHHHHHHHHHHHHHHhCChHHHHHHHHHHHHHHHhcccHhHHHHHHHH
Confidence 12223445677777777777776666443 2222 22344677777777777776665554
No 250
>smart00299 CLH Clathrin heavy chain repeat homology.
Probab=93.38 E-value=5.2 Score=35.68 Aligned_cols=84 Identities=18% Similarity=0.143 Sum_probs=41.5
Q ss_pred HHHHHHhccCChHHHHHHHHHHHHhCCCCchhHHHHHHHHHHhCCChHHHHHHHhccCCCCeeeHHHHHHHHHhcCChhH
Q 003584 240 SILTACAAVSARDFGAQVHGCILSSGFEANVYVQSALIDMYAKCGDLDSARRLLEYSEIDNEVSWNSMIVGFARQGFHKE 319 (809)
Q Consensus 240 ~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~Li~~y~~~g~~~~A~~~f~~~~~~~~~~~~~li~~~~~~g~~~~ 319 (809)
.++..+...+........++.+++.+ ..+....|.++..|++.. .++....++. ..+......++..+.+.+.+++
T Consensus 12 ~vv~~~~~~~~~~~l~~yLe~~~~~~-~~~~~~~~~li~ly~~~~-~~~ll~~l~~--~~~~yd~~~~~~~c~~~~l~~~ 87 (140)
T smart00299 12 EVVELFEKRNLLEELIPYLESALKLN-SENPALQTKLIELYAKYD-PQKEIERLDN--KSNHYDIEKVGKLCEKAKLYEE 87 (140)
T ss_pred HHHHHHHhCCcHHHHHHHHHHHHccC-ccchhHHHHHHHHHHHHC-HHHHHHHHHh--ccccCCHHHHHHHHHHcCcHHH
Confidence 44444444455555555555555554 355667777777777653 2333333331 1222333334444555555555
Q ss_pred HHHHHHHH
Q 003584 320 ALSLFKKM 327 (809)
Q Consensus 320 A~~~~~~m 327 (809)
+.-++.++
T Consensus 88 ~~~l~~k~ 95 (140)
T smart00299 88 AVELYKKD 95 (140)
T ss_pred HHHHHHhh
Confidence 55444443
No 251
>COG1729 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=93.33 E-value=0.38 Score=47.06 Aligned_cols=82 Identities=20% Similarity=0.285 Sum_probs=48.2
Q ss_pred hcCCHHHHHHHHHhCcC-------CCCHHHHHHHHHHHHhcCChhHHHHHHHHHhccCCCC---CccHHhHhhhhhhcCC
Q 003584 586 RSGKLIEAKALLDQMVG-------EPDATVWKALLSACRVHGDLELGERAANNLFELEPMN---AMPYVQLSNMYSTAGK 655 (809)
Q Consensus 586 ~~g~~~eA~~~~~~m~~-------~p~~~~~~~ll~a~~~~g~~~~A~~~~~~~~~~~p~~---~~~~~~l~~~~~~~g~ 655 (809)
+.|++.+|...|..... .||+.-| |+.++...|+++.|...|..+.+-.|++ |..+.-|+.+..+.|+
T Consensus 153 ksgdy~~A~~~F~~fi~~YP~s~~~~nA~yW--LGe~~y~qg~y~~Aa~~f~~~~k~~P~s~KApdallKlg~~~~~l~~ 230 (262)
T COG1729 153 KSGDYAEAEQAFQAFIKKYPNSTYTPNAYYW--LGESLYAQGDYEDAAYIFARVVKDYPKSPKAPDALLKLGVSLGRLGN 230 (262)
T ss_pred HcCCHHHHHHHHHHHHHcCCCCcccchhHHH--HHHHHHhcccchHHHHHHHHHHHhCCCCCCChHHHHHHHHHHHHhcC
Confidence 34445555554444332 1445555 5666666666666666666666654443 3456666677777777
Q ss_pred hhHHHHHHHHHHhC
Q 003584 656 WEDAARVRKLMKSR 669 (809)
Q Consensus 656 ~~~A~~~~~~m~~~ 669 (809)
.++|..+++...++
T Consensus 231 ~d~A~atl~qv~k~ 244 (262)
T COG1729 231 TDEACATLQQVIKR 244 (262)
T ss_pred HHHHHHHHHHHHHH
Confidence 77777777666544
No 252
>KOG2066 consensus Vacuolar assembly/sorting protein VPS41 [Intracellular trafficking, secretion, and vesicular transport]
Probab=93.18 E-value=18 Score=40.90 Aligned_cols=75 Identities=20% Similarity=0.230 Sum_probs=42.6
Q ss_pred hHHHHHHHHHHhCCChHHHHHHHhccCCCCeeeHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCcccHHHHHHHhhc
Q 003584 271 YVQSALIDMYAKCGDLDSARRLLEYSEIDNEVSWNSMIVGFARQGFHKEALSLFKKMHARDIKIDDFTYPSVLNCFAS 348 (809)
Q Consensus 271 ~~~~~Li~~y~~~g~~~~A~~~f~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~ 348 (809)
.++...|+.+.-.|++++|....-.|...+..-|.-.+..+...++......+ +.......+...|..+|..+..
T Consensus 393 kv~~~yI~HLl~~~~y~~Aas~~p~m~gn~~~eWe~~V~~f~e~~~l~~Ia~~---lPt~~~rL~p~vYemvLve~L~ 467 (846)
T KOG2066|consen 393 KVGKTYIDHLLFEGKYDEAASLCPKMLGNNAAEWELWVFKFAELDQLTDIAPY---LPTGPPRLKPLVYEMVLVEFLA 467 (846)
T ss_pred HHHHHHHHHHHhcchHHHHHhhhHHHhcchHHHHHHHHHHhccccccchhhcc---CCCCCcccCchHHHHHHHHHHH
Confidence 34556666666677777777777766666666676666666666655443322 2221222344455555555544
No 253
>PF04053 Coatomer_WDAD: Coatomer WD associated region ; InterPro: IPR006692 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the WD-associated region found in coatomer subunits alpha, beta and beta' subunits. The alpha-subunit (RET1P) of the coatomer complex in Saccharomyces cerevisiae (Baker's yeast), participates in membrane transport between the endoplasmic reticulum and Golgi apparatus. The protein contains six WD-40 repeat motifs in its N-terminal region []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006886 intracellular protein transport, 0016192 vesicle-mediated transport, 0030117 membrane coat; PDB: 3MKQ_B.
Probab=93.09 E-value=1.2 Score=48.25 Aligned_cols=101 Identities=16% Similarity=0.204 Sum_probs=56.0
Q ss_pred HHHHhCCChHHHHHHHhccCCCCeeeHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCcccHHHHHHHhhcCCChHHHHH
Q 003584 278 DMYAKCGDLDSARRLLEYSEIDNEVSWNSMIVGFARQGFHKEALSLFKKMHARDIKIDDFTYPSVLNCFASNIDLNNAKS 357 (809)
Q Consensus 278 ~~y~~~g~~~~A~~~f~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~ 357 (809)
+...++|+++.|.++-++.. +...|..|.....+.|+++-|.+.|.+..+ +..++-.+...|+.+.-.+
T Consensus 326 eLAl~lg~L~~A~~~a~~~~--~~~~W~~Lg~~AL~~g~~~lAe~c~~k~~d---------~~~L~lLy~~~g~~~~L~k 394 (443)
T PF04053_consen 326 ELALQLGNLDIALEIAKELD--DPEKWKQLGDEALRQGNIELAEECYQKAKD---------FSGLLLLYSSTGDREKLSK 394 (443)
T ss_dssp HHHHHCT-HHHHHHHCCCCS--THHHHHHHHHHHHHTTBHHHHHHHHHHCT----------HHHHHHHHHHCT-HHHHHH
T ss_pred HHHHhcCCHHHHHHHHHhcC--cHHHHHHHHHHHHHcCCHHHHHHHHHhhcC---------ccccHHHHHHhCCHHHHHH
Confidence 34456677777777766554 445777777777777777777777776532 4445555555566555555
Q ss_pred HHHHHHHhccCCchHHHHHHHHHHHhcCCHHHHHHHHh
Q 003584 358 VHSLIVKTGFEGYKFVNNALIDMYAKQGNLDCAFMVFN 395 (809)
Q Consensus 358 i~~~~~~~g~~~~~~~~~~li~~y~~~g~~~~A~~~f~ 395 (809)
+.......|- +|.-..++.-.|++++..+++.
T Consensus 395 l~~~a~~~~~------~n~af~~~~~lgd~~~cv~lL~ 426 (443)
T PF04053_consen 395 LAKIAEERGD------INIAFQAALLLGDVEECVDLLI 426 (443)
T ss_dssp HHHHHHHTT-------HHHHHHHHHHHT-HHHHHHHHH
T ss_pred HHHHHHHccC------HHHHHHHHHHcCCHHHHHHHHH
Confidence 5555544441 2333334444555555555443
No 254
>PF12921 ATP13: Mitochondrial ATPase expression; InterPro: IPR024319 ATPase expression protein 2 (also known as ATP13 in some species) is necessary for the expression of subunit 9 of mitochondrial ATPase. The protein has a basic amino terminal signal sequence that is cleaved upon import into mitochondria [].
Probab=92.94 E-value=0.93 Score=39.46 Aligned_cols=82 Identities=18% Similarity=0.317 Sum_probs=46.6
Q ss_pred CHHHHHHHHHHHHccCCHHHHHHHHHHhH--------------HhhCCCCChHHHHHHHHHHhhcCCHHHHHHHHHhCcC
Q 003584 537 DYITFVGLLFACSHAGLAENARWYFESMD--------------KVYGIKPGPDHYACMIDLLGRSGKLIEAKALLDQMVG 602 (809)
Q Consensus 537 d~~t~~~ll~a~~~~g~~~~a~~~~~~m~--------------~~~~~~p~~~~~~~li~~~~~~g~~~eA~~~~~~m~~ 602 (809)
|..++.+++.++++.|+++....+.+..- ....+.|+.....+++.+|+..|++..|+++++....
T Consensus 1 de~~~~~ii~al~r~g~~~~i~~~i~~~WgI~~~~~~~~~~~~~~spl~Pt~~lL~AIv~sf~~n~~i~~al~~vd~fs~ 80 (126)
T PF12921_consen 1 DEELLCNIIYALGRSGQLDSIKSYIKSVWGIDVNGKKKEGDYPPSSPLYPTSRLLIAIVHSFGYNGDIFSALKLVDFFSR 80 (126)
T ss_pred ChHHHHHHHHHHhhcCCHHHHHHHHHHhcCCCCCCccccCccCCCCCCCCCHHHHHHHHHHHHhcccHHHHHHHHHHHHH
Confidence 34556666666666666666666654321 1123445666666666666666777666666655442
Q ss_pred ----CCCHHHHHHHHHHHHh
Q 003584 603 ----EPDATVWKALLSACRV 618 (809)
Q Consensus 603 ----~p~~~~~~~ll~a~~~ 618 (809)
+-+...|..|+.-+..
T Consensus 81 ~Y~I~i~~~~W~~Ll~W~~v 100 (126)
T PF12921_consen 81 KYPIPIPKEFWRRLLEWAYV 100 (126)
T ss_pred HcCCCCCHHHHHHHHHHHHH
Confidence 2234566666654433
No 255
>COG3118 Thioredoxin domain-containing protein [Posttranslational modification, protein turnover, chaperones]
Probab=92.72 E-value=4.1 Score=40.50 Aligned_cols=121 Identities=11% Similarity=0.029 Sum_probs=87.5
Q ss_pred HHHHccCCHHHHHHHHHHhHHhhCCCCChHHHHHHHHHHhhcCCHHHHHHHHHhCcCCCCHHHHHH---HHHHHHhcCCh
Q 003584 546 FACSHAGLAENARWYFESMDKVYGIKPGPDHYACMIDLLGRSGKLIEAKALLDQMVGEPDATVWKA---LLSACRVHGDL 622 (809)
Q Consensus 546 ~a~~~~g~~~~a~~~~~~m~~~~~~~p~~~~~~~li~~~~~~g~~~eA~~~~~~m~~~p~~~~~~~---ll~a~~~~g~~ 622 (809)
......|+..+|...|...... ..-+...-..|+..|...|+.++|..++..++.+-...-|.. -+..+.+..+.
T Consensus 142 ~~~~~~e~~~~a~~~~~~al~~--~~~~~~~~~~la~~~l~~g~~e~A~~iL~~lP~~~~~~~~~~l~a~i~ll~qaa~~ 219 (304)
T COG3118 142 KELIEAEDFGEAAPLLKQALQA--APENSEAKLLLAECLLAAGDVEAAQAILAALPLQAQDKAAHGLQAQIELLEQAAAT 219 (304)
T ss_pred hhhhhccchhhHHHHHHHHHHh--CcccchHHHHHHHHHHHcCChHHHHHHHHhCcccchhhHHHHHHHHHHHHHHHhcC
Confidence 3456788999999999887753 223456677889999999999999999999997533333333 22333333333
Q ss_pred hHHHHHHHHHhccCCCCCccHHhHhhhhhhcCChhHHHHHHHHHHhC
Q 003584 623 ELGERAANNLFELEPMNAMPYVQLSNMYSTAGKWEDAARVRKLMKSR 669 (809)
Q Consensus 623 ~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~ 669 (809)
.+... +++-+..+|+|...-..|+..|...|+.++|.+.+-.+..+
T Consensus 220 ~~~~~-l~~~~aadPdd~~aa~~lA~~~~~~g~~e~Ale~Ll~~l~~ 265 (304)
T COG3118 220 PEIQD-LQRRLAADPDDVEAALALADQLHLVGRNEAALEHLLALLRR 265 (304)
T ss_pred CCHHH-HHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Confidence 33222 34455678999999999999999999999999888777655
No 256
>PF04184 ST7: ST7 protein; InterPro: IPR007311 The ST7 (for suppression of tumorigenicity 7) protein is thought to be a tumour suppressor gene. The molecular function of this protein is uncertain.
Probab=92.57 E-value=11 Score=40.40 Aligned_cols=55 Identities=15% Similarity=0.135 Sum_probs=32.8
Q ss_pred HHHHHHhcCChHHHHHHHHHHHHCCCCC--CHHHHHHHHHHHHccCCHHHHHHHHHHh
Q 003584 509 LIMGCAQNGKGKEALQFYDQMLARGTKP--DYITFVGLLFACSHAGLAENARWYFESM 564 (809)
Q Consensus 509 li~~~~~~g~~~~A~~l~~~m~~~g~~p--d~~t~~~ll~a~~~~g~~~~a~~~~~~m 564 (809)
+.....+.|+.+||++.|++|.+.. ++ +......|+.++...+.+.++..++.+.
T Consensus 265 LAmCarklGr~~EAIk~~rdLlke~-p~~~~l~IrenLie~LLelq~Yad~q~lL~kY 321 (539)
T PF04184_consen 265 LAMCARKLGRLREAIKMFRDLLKEF-PNLDNLNIRENLIEALLELQAYADVQALLAKY 321 (539)
T ss_pred HHHHHHHhCChHHHHHHHHHHHhhC-CccchhhHHHHHHHHHHhcCCHHHHHHHHHHh
Confidence 4455556677777777777776542 12 1224556666666666666666666544
No 257
>PRK15331 chaperone protein SicA; Provisional
Probab=92.45 E-value=2.3 Score=38.47 Aligned_cols=85 Identities=13% Similarity=0.008 Sum_probs=34.9
Q ss_pred hcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHhHHhhCCCCChHHHHHHHHHHhhcCCHHHHH
Q 003584 515 QNGKGKEALQFYDQMLARGTKPDYITFVGLLFACSHAGLAENARWYFESMDKVYGIKPGPDHYACMIDLLGRSGKLIEAK 594 (809)
Q Consensus 515 ~~g~~~~A~~l~~~m~~~g~~pd~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~~~~~~~li~~~~~~g~~~eA~ 594 (809)
+.|++++|..+|+-+...+ .-|..-+..|..+|-..+.+++|...|........-.|.+ +--....|...|+.++|+
T Consensus 49 ~~Gk~~eA~~~F~~L~~~d-~~n~~Y~~GLaa~~Q~~k~y~~Ai~~Y~~A~~l~~~dp~p--~f~agqC~l~l~~~~~A~ 125 (165)
T PRK15331 49 NQGRLDEAETFFRFLCIYD-FYNPDYTMGLAAVCQLKKQFQKACDLYAVAFTLLKNDYRP--VFFTGQCQLLMRKAAKAR 125 (165)
T ss_pred HCCCHHHHHHHHHHHHHhC-cCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccCCCCc--cchHHHHHHHhCCHHHHH
Confidence 4455555555555444421 1111222333334444455555555554332211111222 222344445555555555
Q ss_pred HHHHhCcC
Q 003584 595 ALLDQMVG 602 (809)
Q Consensus 595 ~~~~~m~~ 602 (809)
..|.....
T Consensus 126 ~~f~~a~~ 133 (165)
T PRK15331 126 QCFELVNE 133 (165)
T ss_pred HHHHHHHh
Confidence 55554443
No 258
>KOG2610 consensus Uncharacterized conserved protein [Function unknown]
Probab=91.78 E-value=4.5 Score=40.63 Aligned_cols=152 Identities=14% Similarity=0.109 Sum_probs=95.3
Q ss_pred cCCHHHHHHHHHhcC---CCCeeechHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHH----HHHHHHHccCCHHHH
Q 003584 485 CGCINDANRVFDSMH---TRDVITWTALIMGCAQNGKGKEALQFYDQMLARGTKPDYITFV----GLLFACSHAGLAENA 557 (809)
Q Consensus 485 ~g~~~~A~~~~~~~~---~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~pd~~t~~----~ll~a~~~~g~~~~a 557 (809)
.|+..+|...++++. +.|..+|+---.+|..+|+.+.-...+++.... ..||...|. .+.-++...|-+++|
T Consensus 116 ~g~~h~a~~~wdklL~d~PtDlla~kfsh~a~fy~G~~~~~k~ai~kIip~-wn~dlp~~sYv~GmyaFgL~E~g~y~dA 194 (491)
T KOG2610|consen 116 RGKHHEAAIEWDKLLDDYPTDLLAVKFSHDAHFYNGNQIGKKNAIEKIIPK-WNADLPCYSYVHGMYAFGLEECGIYDDA 194 (491)
T ss_pred cccccHHHHHHHHHHHhCchhhhhhhhhhhHHHhccchhhhhhHHHHhccc-cCCCCcHHHHHHHHHHhhHHHhccchhH
Confidence 567777777777766 357788888888888888888888888887754 355554333 223345677888888
Q ss_pred HHHHHHhHHhhCCCC-ChHHHHHHHHHHhhcCCHHHHHHHHHhCcCCCC-------HHHHHHHHHHHHhcCChhHHHHHH
Q 003584 558 RWYFESMDKVYGIKP-GPDHYACMIDLLGRSGKLIEAKALLDQMVGEPD-------ATVWKALLSACRVHGDLELGERAA 629 (809)
Q Consensus 558 ~~~~~~m~~~~~~~p-~~~~~~~li~~~~~~g~~~eA~~~~~~m~~~p~-------~~~~~~ll~a~~~~g~~~~A~~~~ 629 (809)
.+.-++.. .+.| |.-.-.++...+.-.|+..|+.++..+-...-+ ..-|..-+ .+...+.++.|+++|
T Consensus 195 Ek~A~ral---qiN~~D~Wa~Ha~aHVlem~~r~Keg~eFM~~ted~Wr~s~mlasHNyWH~Al-~~iE~aeye~aleIy 270 (491)
T KOG2610|consen 195 EKQADRAL---QINRFDCWASHAKAHVLEMNGRHKEGKEFMYKTEDDWRQSWMLASHNYWHTAL-FHIEGAEYEKALEIY 270 (491)
T ss_pred HHHHHhhc---cCCCcchHHHHHHHHHHHhcchhhhHHHHHHhcccchhhhhHHHhhhhHHHHH-hhhcccchhHHHHHH
Confidence 88776554 3333 333444666777788888888888877553211 11122221 233446788888888
Q ss_pred HHH--hccCCCCCc
Q 003584 630 NNL--FELEPMNAM 641 (809)
Q Consensus 630 ~~~--~~~~p~~~~ 641 (809)
+.- -+++.+|+.
T Consensus 271 D~ei~k~l~k~Da~ 284 (491)
T KOG2610|consen 271 DREIWKRLEKDDAV 284 (491)
T ss_pred HHHHHHHhhccchh
Confidence 643 245555553
No 259
>COG4105 ComL DNA uptake lipoprotein [General function prediction only]
Probab=91.76 E-value=13 Score=36.28 Aligned_cols=166 Identities=19% Similarity=0.223 Sum_probs=88.0
Q ss_pred HhcCCHHHHHHHHHhcCCCCe---e---echHHHHHHHhcCChHHHHHHHHHHHHC-CCCCCHHHHHHHHHHHH---cc-
Q 003584 483 AKCGCINDANRVFDSMHTRDV---I---TWTALIMGCAQNGKGKEALQFYDQMLAR-GTKPDYITFVGLLFACS---HA- 551 (809)
Q Consensus 483 ~k~g~~~~A~~~~~~~~~~~~---~---~~~~li~~~~~~g~~~~A~~l~~~m~~~-g~~pd~~t~~~ll~a~~---~~- 551 (809)
.+.|++++|.+.|+.+....+ . +--.++-++-+.+++++|+..+++.... +-.||. -|...|.+++ ..
T Consensus 45 L~~gn~~~A~~~fe~l~~~~p~s~~~~qa~l~l~yA~Yk~~~y~~A~~~~drFi~lyP~~~n~-dY~~YlkgLs~~~~i~ 123 (254)
T COG4105 45 LQKGNYEEAIKYFEALDSRHPFSPYSEQAQLDLAYAYYKNGEYDLALAYIDRFIRLYPTHPNA-DYAYYLKGLSYFFQID 123 (254)
T ss_pred HhcCCHHHHHHHHHHHHHcCCCCcccHHHHHHHHHHHHhcccHHHHHHHHHHHHHhCCCCCCh-hHHHHHHHHHHhccCC
Confidence 356888888888888773322 2 2223445566788888888888887763 222332 3333333333 21
Q ss_pred ---CCHH---HHHHHHHHhHHhhCCCCChHHHHHHHHHHhhcCCHHHHHHHHHhCcCCCCHHH--HHHHHHHHHhcCChh
Q 003584 552 ---GLAE---NARWYFESMDKVYGIKPGPDHYACMIDLLGRSGKLIEAKALLDQMVGEPDATV--WKALLSACRVHGDLE 623 (809)
Q Consensus 552 ---g~~~---~a~~~~~~m~~~~~~~p~~~~~~~li~~~~~~g~~~eA~~~~~~m~~~p~~~~--~~~ll~a~~~~g~~~ 623 (809)
.+.. +|..-|+.+.++| |+. .-..+|..-+.... |... =.+...-|.+.|.+.
T Consensus 124 ~~~rDq~~~~~A~~~f~~~i~ry---PnS-------------~Ya~dA~~~i~~~~---d~LA~~Em~IaryY~kr~~~~ 184 (254)
T COG4105 124 DVTRDQSAARAAFAAFKELVQRY---PNS-------------RYAPDAKARIVKLN---DALAGHEMAIARYYLKRGAYV 184 (254)
T ss_pred ccccCHHHHHHHHHHHHHHHHHC---CCC-------------cchhhHHHHHHHHH---HHHHHHHHHHHHHHHHhcChH
Confidence 1222 2333333333322 221 11111111111110 1110 112456677888888
Q ss_pred HHHHHHHHHhccCCCCCc---cHHhHhhhhhhcCChhHHHHHHHHHHh
Q 003584 624 LGERAANNLFELEPMNAM---PYVQLSNMYSTAGKWEDAARVRKLMKS 668 (809)
Q Consensus 624 ~A~~~~~~~~~~~p~~~~---~~~~l~~~~~~~g~~~~A~~~~~~m~~ 668 (809)
.|..-++.+++.-|+.+. .+..|..+|.+.|..++|.+.-+-+..
T Consensus 185 AA~nR~~~v~e~y~~t~~~~eaL~~l~eaY~~lgl~~~a~~~~~vl~~ 232 (254)
T COG4105 185 AAINRFEEVLENYPDTSAVREALARLEEAYYALGLTDEAKKTAKVLGA 232 (254)
T ss_pred HHHHHHHHHHhccccccchHHHHHHHHHHHHHhCChHHHHHHHHHHHh
Confidence 888888888877655443 355667778888888888777666554
No 260
>KOG3941 consensus Intermediate in Toll signal transduction pathway (ECSIT) [Signal transduction mechanisms]
Probab=91.73 E-value=1 Score=43.86 Aligned_cols=100 Identities=17% Similarity=0.199 Sum_probs=78.4
Q ss_pred HHHHHHhcC--CCCeeechHHHHHHHhc-----CChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccC-----------
Q 003584 491 ANRVFDSMH--TRDVITWTALIMGCAQN-----GKGKEALQFYDQMLARGTKPDYITFVGLLFACSHAG----------- 552 (809)
Q Consensus 491 A~~~~~~~~--~~~~~~~~~li~~~~~~-----g~~~~A~~l~~~m~~~g~~pd~~t~~~ll~a~~~~g----------- 552 (809)
.+..|.... ++|-.+|-+++..+..+ +..+=....++.|.+-|+.-|..+|..||+.+-+..
T Consensus 53 ~e~~F~aa~~~~RdK~sfl~~V~~F~E~sVr~R~HveFIy~ALk~m~eyGVerDl~vYk~LlnvfPKgkfiP~nvfQ~~F 132 (406)
T KOG3941|consen 53 VEKQFEAAEPEKRDKDSFLAAVATFKEKSVRGRTHVEFIYTALKYMKEYGVERDLDVYKGLLNVFPKGKFIPQNVFQKVF 132 (406)
T ss_pred hhhhhhccCcccccHHHHHHHHHHHHHhhhcccchHHHHHHHHHHHHHhcchhhHHHHHHHHHhCcccccccHHHHHHHH
Confidence 345566666 66777888888887654 556667777899999999999999999998765432
Q ss_pred -----CHHHHHHHHHHhHHhhCCCCChHHHHHHHHHHhhcCCHH
Q 003584 553 -----LAENARWYFESMDKVYGIKPGPDHYACMIDLLGRSGKLI 591 (809)
Q Consensus 553 -----~~~~a~~~~~~m~~~~~~~p~~~~~~~li~~~~~~g~~~ 591 (809)
+-+=++.+++.|... |+.||.++-..|+.+++|.|..-
T Consensus 133 ~HYP~QQ~C~I~vLeqME~h-GVmPdkE~e~~lvn~FGr~~~p~ 175 (406)
T KOG3941|consen 133 LHYPQQQNCAIKVLEQMEWH-GVMPDKEIEDILVNAFGRWNFPT 175 (406)
T ss_pred hhCchhhhHHHHHHHHHHHc-CCCCchHHHHHHHHHhccccccH
Confidence 223478899999754 99999999999999999998643
No 261
>KOG1920 consensus IkappaB kinase complex, IKAP component [Transcription]
Probab=91.51 E-value=34 Score=40.83 Aligned_cols=107 Identities=17% Similarity=0.109 Sum_probs=64.0
Q ss_pred HhcCCHHHHHHHHHhcCCCCeeechHHH----HHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCCHHHHH
Q 003584 483 AKCGCINDANRVFDSMHTRDVITWTALI----MGCAQNGKGKEALQFYDQMLARGTKPDYITFVGLLFACSHAGLAENAR 558 (809)
Q Consensus 483 ~k~g~~~~A~~~~~~~~~~~~~~~~~li----~~~~~~g~~~~A~~l~~~m~~~g~~pd~~t~~~ll~a~~~~g~~~~a~ 558 (809)
-+.|.+.+|..++ .+|...+.... .-+...+.+++|.-+|+..-+ ..-.+.+|...|+|++|.
T Consensus 919 ~kh~Ly~~aL~ly----~~~~e~~k~i~~~ya~hL~~~~~~~~Aal~Ye~~Gk---------lekAl~a~~~~~dWr~~l 985 (1265)
T KOG1920|consen 919 KKHGLYDEALALY----KPDSEKQKVIYEAYADHLREELMSDEAALMYERCGK---------LEKALKAYKECGDWREAL 985 (1265)
T ss_pred Hhcccchhhhhee----ccCHHHHHHHHHHHHHHHHHhccccHHHHHHHHhcc---------HHHHHHHHHHhccHHHHH
Confidence 3444444444444 33443333333 333445666666666654322 223466778888899888
Q ss_pred HHHHHhHHhhCCCCChHHHHHHHHHHhhcCCHHHHHHHHHhCcCCC
Q 003584 559 WYFESMDKVYGIKPGPDHYACMIDLLGRSGKLIEAKALLDQMVGEP 604 (809)
Q Consensus 559 ~~~~~m~~~~~~~p~~~~~~~li~~~~~~g~~~eA~~~~~~m~~~p 604 (809)
.+..++.. +-.--..+-..|+.-+..+++.-||-++..+....|
T Consensus 986 ~~a~ql~~--~~de~~~~a~~L~s~L~e~~kh~eAa~il~e~~sd~ 1029 (1265)
T KOG1920|consen 986 SLAAQLSE--GKDELVILAEELVSRLVEQRKHYEAAKILLEYLSDP 1029 (1265)
T ss_pred HHHHhhcC--CHHHHHHHHHHHHHHHHHcccchhHHHHHHHHhcCH
Confidence 88776532 111122344678888889999999999888877554
No 262
>KOG3941 consensus Intermediate in Toll signal transduction pathway (ECSIT) [Signal transduction mechanisms]
Probab=91.49 E-value=1.5 Score=42.72 Aligned_cols=99 Identities=7% Similarity=0.001 Sum_probs=68.2
Q ss_pred HHHHHhhhCC--CCCcchHHHHHHHHHc-----CCCchhHHHHHHHHHHcCCCCCcccHHHHHHHhhcCCCc--------
Q 003584 85 EAKKLFNETP--FKNFFTWSSLIYGYSN-----YGLDIEAFELFWQMQLEGYRPSQYTLDNVLRLCSLKGLL-------- 149 (809)
Q Consensus 85 ~A~~~f~~~~--~~~~~~~~~li~~~~~-----~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~-------- 149 (809)
..+..|...+ ++|-.+|-.++.-+.. .+..+-....+..|.+-|+.-|..+|..||+.+-+..-+
T Consensus 52 ~~e~~F~aa~~~~RdK~sfl~~V~~F~E~sVr~R~HveFIy~ALk~m~eyGVerDl~vYk~LlnvfPKgkfiP~nvfQ~~ 131 (406)
T KOG3941|consen 52 HVEKQFEAAEPEKRDKDSFLAAVATFKEKSVRGRTHVEFIYTALKYMKEYGVERDLDVYKGLLNVFPKGKFIPQNVFQKV 131 (406)
T ss_pred chhhhhhccCcccccHHHHHHHHHHHHHhhhcccchHHHHHHHHHHHHHhcchhhHHHHHHHHHhCcccccccHHHHHHH
Confidence 3455666665 5666777777776654 345566667788899999999999999998877654322
Q ss_pred --------hHHHHHHHHHHHhCCCCchHHHHHHHHhhhcCCC
Q 003584 150 --------QRGEQFHGYAIKTCFDLNAFVVTGLVDMYAKCKC 183 (809)
Q Consensus 150 --------~~a~~~~~~~~~~g~~~~~~~~~~li~~y~~~g~ 183 (809)
.-+..++++|...|+.||-.+-..|++++.+.+.
T Consensus 132 F~HYP~QQ~C~I~vLeqME~hGVmPdkE~e~~lvn~FGr~~~ 173 (406)
T KOG3941|consen 132 FLHYPQQQNCAIKVLEQMEWHGVMPDKEIEDILVNAFGRWNF 173 (406)
T ss_pred HhhCchhhhHHHHHHHHHHHcCCCCchHHHHHHHHHhccccc
Confidence 2355667777777777777777777777766654
No 263
>PF13512 TPR_18: Tetratricopeptide repeat
Probab=91.34 E-value=4.1 Score=35.96 Aligned_cols=111 Identities=17% Similarity=0.120 Sum_probs=52.6
Q ss_pred HHhcCChHHHHHHHHHHHHCCCCCC---HHHHHHHHHHHHccCCHHHHHHHHHHhHHhhCCCCChHHHHHHHHHHhhcCC
Q 003584 513 CAQNGKGKEALQFYDQMLARGTKPD---YITFVGLLFACSHAGLAENARWYFESMDKVYGIKPGPDHYACMIDLLGRSGK 589 (809)
Q Consensus 513 ~~~~g~~~~A~~l~~~m~~~g~~pd---~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~~~~~~~li~~~~~~g~ 589 (809)
..+.|++++|.+.|+.+... .+.. ...-..++.++.+.+++++|...+++..+.+--.|+ ..|.....+++.-..
T Consensus 20 ~l~~~~Y~~A~~~le~L~~r-yP~g~ya~qAqL~l~yayy~~~~y~~A~a~~~rFirLhP~hp~-vdYa~Y~~gL~~~~~ 97 (142)
T PF13512_consen 20 ALQKGNYEEAIKQLEALDTR-YPFGEYAEQAQLDLAYAYYKQGDYEEAIAAYDRFIRLHPTHPN-VDYAYYMRGLSYYEQ 97 (142)
T ss_pred HHHhCCHHHHHHHHHHHHhc-CCCCcccHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCCC-ccHHHHHHHHHHHHH
Confidence 34556666666666666553 1111 123445556666666666666666666544322232 223222222222222
Q ss_pred HHHHHHHHHhCcCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHhccCCCCC
Q 003584 590 LIEAKALLDQMVGEPDATVWKALLSACRVHGDLELGERAANNLFELEPMNA 640 (809)
Q Consensus 590 ~~eA~~~~~~m~~~p~~~~~~~ll~a~~~~g~~~~A~~~~~~~~~~~p~~~ 640 (809)
.+.+ +..+. ..=+..+....|...|++++..-|++.
T Consensus 98 ~~~~---~~~~~------------~~drD~~~~~~A~~~f~~lv~~yP~S~ 133 (142)
T PF13512_consen 98 DEGS---LQSFF------------RSDRDPTPARQAFRDFEQLVRRYPNSE 133 (142)
T ss_pred hhhH---Hhhhc------------ccccCcHHHHHHHHHHHHHHHHCcCCh
Confidence 1111 11111 001111235677788888888888754
No 264
>PRK09687 putative lyase; Provisional
Probab=91.16 E-value=19 Score=36.57 Aligned_cols=79 Identities=13% Similarity=0.120 Sum_probs=39.1
Q ss_pred CchHHHHHHHHHHHhcCCHHHHHHHHhhcCCCCHhHHHHHHHHHHhcCCH----HHHHHHHHHHhhcCCccCHhHHHHHH
Q 003584 369 GYKFVNNALIDMYAKQGNLDCAFMVFNLMQDKDVISWTSLITGCAYHGSY----EEALKYFSDMRISGICPDHVVVSSIL 444 (809)
Q Consensus 369 ~~~~~~~~li~~y~~~g~~~~A~~~f~~~~~~~~~~~~~li~~~~~~g~~----~~A~~~~~~m~~~g~~p~~~t~~~ll 444 (809)
+|..+.-..+..+...|..+....+..-+..+|...-...+.++.+.|+. .++...+..+... .|+...-...+
T Consensus 35 ~d~~vR~~A~~aL~~~~~~~~~~~l~~ll~~~d~~vR~~A~~aLg~lg~~~~~~~~a~~~L~~l~~~--D~d~~VR~~A~ 112 (280)
T PRK09687 35 HNSLKRISSIRVLQLRGGQDVFRLAIELCSSKNPIERDIGADILSQLGMAKRCQDNVFNILNNLALE--DKSACVRASAI 112 (280)
T ss_pred CCHHHHHHHHHHHHhcCcchHHHHHHHHHhCCCHHHHHHHHHHHHhcCCCccchHHHHHHHHHHHhc--CCCHHHHHHHH
Confidence 44445555555555555443333333333445555555556666666652 3556666555332 34444444444
Q ss_pred HHHhc
Q 003584 445 SACAE 449 (809)
Q Consensus 445 ~a~~~ 449 (809)
.++..
T Consensus 113 ~aLG~ 117 (280)
T PRK09687 113 NATGH 117 (280)
T ss_pred HHHhc
Confidence 44433
No 265
>KOG2610 consensus Uncharacterized conserved protein [Function unknown]
Probab=90.93 E-value=1.9 Score=43.09 Aligned_cols=159 Identities=14% Similarity=0.046 Sum_probs=117.8
Q ss_pred hcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHhHHhhCCCCChHHHH----HHHHHHhhcCCH
Q 003584 515 QNGKGKEALQFYDQMLARGTKPDYITFVGLLFACSHAGLAENARWYFESMDKVYGIKPGPDHYA----CMIDLLGRSGKL 590 (809)
Q Consensus 515 ~~g~~~~A~~l~~~m~~~g~~pd~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~~~~~~----~li~~~~~~g~~ 590 (809)
-+|+..+|-..++++++. .+.|...+.-.=.+|...|+.+.-...++.+... -.|+...|+ .+.-.+..+|-+
T Consensus 115 ~~g~~h~a~~~wdklL~d-~PtDlla~kfsh~a~fy~G~~~~~k~ai~kIip~--wn~dlp~~sYv~GmyaFgL~E~g~y 191 (491)
T KOG2610|consen 115 GRGKHHEAAIEWDKLLDD-YPTDLLAVKFSHDAHFYNGNQIGKKNAIEKIIPK--WNADLPCYSYVHGMYAFGLEECGIY 191 (491)
T ss_pred ccccccHHHHHHHHHHHh-CchhhhhhhhhhhHHHhccchhhhhhHHHHhccc--cCCCCcHHHHHHHHHHhhHHHhccc
Confidence 478999999999999886 6777788888889999999999999888887653 344543333 334456689999
Q ss_pred HHHHHHHHhCcC--CCCHHHHHHHHHHHHhcCChhHHHHHHHHHhccCCC----CCccHHhHhhhhhhcCChhHHHHHHH
Q 003584 591 IEAKALLDQMVG--EPDATVWKALLSACRVHGDLELGERAANNLFELEPM----NAMPYVQLSNMYSTAGKWEDAARVRK 664 (809)
Q Consensus 591 ~eA~~~~~~m~~--~p~~~~~~~ll~a~~~~g~~~~A~~~~~~~~~~~p~----~~~~~~~l~~~~~~~g~~~~A~~~~~ 664 (809)
++|.+.-++..+ +.|.-.-.++.......|+..++.+..++--..=.. -...|-..+-.|...+.++.|.++|+
T Consensus 192 ~dAEk~A~ralqiN~~D~Wa~Ha~aHVlem~~r~Keg~eFM~~ted~Wr~s~mlasHNyWH~Al~~iE~aeye~aleIyD 271 (491)
T KOG2610|consen 192 DDAEKQADRALQINRFDCWASHAKAHVLEMNGRHKEGKEFMYKTEDDWRQSWMLASHNYWHTALFHIEGAEYEKALEIYD 271 (491)
T ss_pred hhHHHHHHhhccCCCcchHHHHHHHHHHHhcchhhhHHHHHHhcccchhhhhHHHhhhhHHHHHhhhcccchhHHHHHHH
Confidence 999999998875 345556667778888999999998876654322111 12346666777888899999999999
Q ss_pred HHHhCCCccCCc
Q 003584 665 LMKSRGIRKEPG 676 (809)
Q Consensus 665 ~m~~~~~~~~~~ 676 (809)
.-.-+.+.|+.+
T Consensus 272 ~ei~k~l~k~Da 283 (491)
T KOG2610|consen 272 REIWKRLEKDDA 283 (491)
T ss_pred HHHHHHhhccch
Confidence 876555555554
No 266
>PRK09687 putative lyase; Provisional
Probab=90.86 E-value=20 Score=36.37 Aligned_cols=76 Identities=9% Similarity=0.008 Sum_probs=41.3
Q ss_pred CCChhHHhHHHHHHHhcCCHHHHHHHHHhcCCCCeeechHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHH
Q 003584 469 CSSLSVDNSLVLVYAKCGCINDANRVFDSMHTRDVITWTALIMGCAQNGKGKEALQFYDQMLARGTKPDYITFVGLLFAC 548 (809)
Q Consensus 469 ~~~~~~~~~li~~y~k~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~pd~~t~~~ll~a~ 548 (809)
.++..+-..-+.++++.|+.+..-.+.+.+..++ ..-..+.++...|.. +|+..+.++.+. .||...-...+.+|
T Consensus 203 D~~~~VR~~A~~aLg~~~~~~av~~Li~~L~~~~--~~~~a~~ALg~ig~~-~a~p~L~~l~~~--~~d~~v~~~a~~a~ 277 (280)
T PRK09687 203 DKNEEIRIEAIIGLALRKDKRVLSVLIKELKKGT--VGDLIIEAAGELGDK-TLLPVLDTLLYK--FDDNEIITKAIDKL 277 (280)
T ss_pred CCChHHHHHHHHHHHccCChhHHHHHHHHHcCCc--hHHHHHHHHHhcCCH-hHHHHHHHHHhh--CCChhHHHHHHHHH
Confidence 3444555555666666666433333333333333 233566677777775 577777777763 45665555555544
Q ss_pred H
Q 003584 549 S 549 (809)
Q Consensus 549 ~ 549 (809)
.
T Consensus 278 ~ 278 (280)
T PRK09687 278 K 278 (280)
T ss_pred h
Confidence 3
No 267
>KOG4234 consensus TPR repeat-containing protein [General function prediction only]
Probab=90.82 E-value=0.57 Score=43.18 Aligned_cols=89 Identities=16% Similarity=0.163 Sum_probs=71.2
Q ss_pred HHHhhcCCHHHHHHHHHhCcC--C-----CCHHHHHHHHHHHHhcCChhHHHHHHHHHhccCCCCCccHHhHhhhhhhcC
Q 003584 582 DLLGRSGKLIEAKALLDQMVG--E-----PDATVWKALLSACRVHGDLELGERAANNLFELEPMNAMPYVQLSNMYSTAG 654 (809)
Q Consensus 582 ~~~~~~g~~~eA~~~~~~m~~--~-----p~~~~~~~ll~a~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g 654 (809)
+-+.+.|.+++|..-|..... + -..+.|..-..+..+.+.++.|+....+++++.|....+...-+.+|.+..
T Consensus 103 N~~F~ngdyeeA~skY~~Ale~cp~~~~e~rsIly~Nraaa~iKl~k~e~aI~dcsKaiel~pty~kAl~RRAeayek~e 182 (271)
T KOG4234|consen 103 NELFKNGDYEEANSKYQEALESCPSTSTEERSILYSNRAAALIKLRKWESAIEDCSKAIELNPTYEKALERRAEAYEKME 182 (271)
T ss_pred HHhhhcccHHHHHHHHHHHHHhCccccHHHHHHHHhhhHHHHHHhhhHHHHHHHHHhhHhcCchhHHHHHHHHHHHHhhh
Confidence 345567778888777766553 1 123456666677889999999999999999999998888888899999999
Q ss_pred ChhHHHHHHHHHHhCC
Q 003584 655 KWEDAARVRKLMKSRG 670 (809)
Q Consensus 655 ~~~~A~~~~~~m~~~~ 670 (809)
++++|..-++++.+..
T Consensus 183 k~eealeDyKki~E~d 198 (271)
T KOG4234|consen 183 KYEEALEDYKKILESD 198 (271)
T ss_pred hHHHHHHHHHHHHHhC
Confidence 9999999999998764
No 268
>PF10300 DUF3808: Protein of unknown function (DUF3808); InterPro: IPR019412 This entry represents a family of proteins conserved from fungi to humans. In humans this protein is expressed in primary breast carcinomas but not in normal breast tissue, and has a putative eukaryotic RNP-1 RNA binding region and a candidate anchoring transmembrane domain. The human protein is coordinately regulated with oestrogen receptor, but is not necessarily oestradiol-responsive []. Members of this family carry a tetratricopeptide repeat (IPR013105 from INTERPRO) at their C terminus.
Probab=90.64 E-value=4.1 Score=44.91 Aligned_cols=81 Identities=14% Similarity=0.160 Sum_probs=36.6
Q ss_pred CCHHHHHHHHHhcCC--CCeeechHHH-HHHHhcCChHHHHHHHHHHHHCCC---CCCHHHHHHHHHHHHccCCHHHHHH
Q 003584 486 GCINDANRVFDSMHT--RDVITWTALI-MGCAQNGKGKEALQFYDQMLARGT---KPDYITFVGLLFACSHAGLAENARW 559 (809)
Q Consensus 486 g~~~~A~~~~~~~~~--~~~~~~~~li-~~~~~~g~~~~A~~l~~~m~~~g~---~pd~~t~~~ll~a~~~~g~~~~a~~ 559 (809)
...+.|.++++.+.+ |+...|.-.- ..+...|+.++|++.|++...... +.....+--+...+.-..++++|.+
T Consensus 247 ~~~~~a~~lL~~~~~~yP~s~lfl~~~gR~~~~~g~~~~Ai~~~~~a~~~q~~~~Ql~~l~~~El~w~~~~~~~w~~A~~ 326 (468)
T PF10300_consen 247 VPLEEAEELLEEMLKRYPNSALFLFFEGRLERLKGNLEEAIESFERAIESQSEWKQLHHLCYFELAWCHMFQHDWEEAAE 326 (468)
T ss_pred CCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHhcCHHHHHHHHHHhccchhhHHhHHHHHHHHHHHHHHHHchHHHHHH
Confidence 445556666665553 4444443322 223445666666666665442100 0111222233334444555555555
Q ss_pred HHHHhHH
Q 003584 560 YFESMDK 566 (809)
Q Consensus 560 ~~~~m~~ 566 (809)
.|..+.+
T Consensus 327 ~f~~L~~ 333 (468)
T PF10300_consen 327 YFLRLLK 333 (468)
T ss_pred HHHHHHh
Confidence 5555543
No 269
>COG4105 ComL DNA uptake lipoprotein [General function prediction only]
Probab=90.56 E-value=18 Score=35.37 Aligned_cols=138 Identities=18% Similarity=0.226 Sum_probs=83.6
Q ss_pred HHHHHHHhcCChHHHHHHHHHHHHCCC-CC-CHHHHHHHHHHHHccCCHHHHHHHHHHhHHhhCCCCChHHHHHHHHHHh
Q 003584 508 ALIMGCAQNGKGKEALQFYDQMLARGT-KP-DYITFVGLLFACSHAGLAENARWYFESMDKVYGIKPGPDHYACMIDLLG 585 (809)
Q Consensus 508 ~li~~~~~~g~~~~A~~l~~~m~~~g~-~p-d~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~~~~~~~li~~~~ 585 (809)
.=+..-.+.|++++|.+.|+.+..+-. .| ...+...++-++-+.++.++|....++....++-.|+.. |...+.+++
T Consensus 39 ~~g~~~L~~gn~~~A~~~fe~l~~~~p~s~~~~qa~l~l~yA~Yk~~~y~~A~~~~drFi~lyP~~~n~d-Y~~YlkgLs 117 (254)
T COG4105 39 NEGLTELQKGNYEEAIKYFEALDSRHPFSPYSEQAQLDLAYAYYKNGEYDLALAYIDRFIRLYPTHPNAD-YAYYLKGLS 117 (254)
T ss_pred HHHHHHHhcCCHHHHHHHHHHHHHcCCCCcccHHHHHHHHHHHHhcccHHHHHHHHHHHHHhCCCCCChh-HHHHHHHHH
Confidence 334445677888888888888886421 11 234566677778888888888888888887776666653 222233332
Q ss_pred hcCCHHHHHHHHHhCcC-CCCHHHHHHHHHHHHhcCChhHHHHHHHHHhccCCCCC-----------------ccHHhHh
Q 003584 586 RSGKLIEAKALLDQMVG-EPDATVWKALLSACRVHGDLELGERAANNLFELEPMNA-----------------MPYVQLS 647 (809)
Q Consensus 586 ~~g~~~eA~~~~~~m~~-~p~~~~~~~ll~a~~~~g~~~~A~~~~~~~~~~~p~~~-----------------~~~~~l~ 647 (809)
.|..+.. ..|.. -...|...++.+++.-|++. +.=..++
T Consensus 118 ----------~~~~i~~~~rDq~-------------~~~~A~~~f~~~i~ryPnS~Ya~dA~~~i~~~~d~LA~~Em~Ia 174 (254)
T COG4105 118 ----------YFFQIDDVTRDQS-------------AARAAFAAFKELVQRYPNSRYAPDAKARIVKLNDALAGHEMAIA 174 (254)
T ss_pred ----------HhccCCccccCHH-------------HHHHHHHHHHHHHHHCCCCcchhhHHHHHHHHHHHHHHHHHHHH
Confidence 1111110 01111 12334444455555555432 1223678
Q ss_pred hhhhhcCChhHHHHHHHHHHhC
Q 003584 648 NMYSTAGKWEDAARVRKLMKSR 669 (809)
Q Consensus 648 ~~~~~~g~~~~A~~~~~~m~~~ 669 (809)
+.|.+.|.|..|..-++.|.+.
T Consensus 175 ryY~kr~~~~AA~nR~~~v~e~ 196 (254)
T COG4105 175 RYYLKRGAYVAAINRFEEVLEN 196 (254)
T ss_pred HHHHHhcChHHHHHHHHHHHhc
Confidence 8899999999999999999876
No 270
>KOG1258 consensus mRNA processing protein [RNA processing and modification]
Probab=90.53 E-value=31 Score=37.98 Aligned_cols=410 Identities=12% Similarity=0.072 Sum_probs=218.1
Q ss_pred CCcccHHHHHHHHhhCCChHHHHHHHHHHHHCCCCCCcchHHH-HHHHHhccCChHHHHHHHHHHHHhCCCCchhHHHHH
Q 003584 198 KNHVAWTTMITGYSQNGYGFKAIECFRDMRVEGVESNQFTFPS-ILTACAAVSARDFGAQVHGCILSSGFEANVYVQSAL 276 (809)
Q Consensus 198 ~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~-ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~L 276 (809)
-+...|+.+|..--+....+.+...+..++.. .|..+-|-. ...-=.+.|..+.+.++|+..++. ++.++..|...
T Consensus 43 ~~f~~wt~li~~~~~~~~~~~~r~~y~~fL~k--yPl~~gyW~kfA~~E~klg~~~~s~~Vfergv~a-ip~SvdlW~~Y 119 (577)
T KOG1258|consen 43 LDFDAWTTLIQENDSIEDVDALREVYDIFLSK--YPLCYGYWKKFADYEYKLGNAENSVKVFERGVQA-IPLSVDLWLSY 119 (577)
T ss_pred hcccchHHHHhccCchhHHHHHHHHHHHHHhh--CccHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHh-hhhHHHHHHHH
Confidence 46678999888776666777777788877743 455544332 222234677888888888877754 45666666666
Q ss_pred HHHHH-hCCChHHHHHHHhccCC------CCeeeHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCcccHHHHHHHhh--
Q 003584 277 IDMYA-KCGDLDSARRLLEYSEI------DNEVSWNSMIVGFARQGFHKEALSLFKKMHARDIKIDDFTYPSVLNCFA-- 347 (809)
Q Consensus 277 i~~y~-~~g~~~~A~~~f~~~~~------~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~-- 347 (809)
+.... ..|+.+..++.|+.... .....|...|.--...+++.....+|++..+.... .|+....-+.
T Consensus 120 ~~f~~n~~~d~~~lr~~fe~A~~~vG~dF~S~~lWdkyie~en~qks~k~v~~iyeRileiP~~----~~~~~f~~f~~~ 195 (577)
T KOG1258|consen 120 LAFLKNNNGDPETLRDLFERAKSYVGLDFLSDPLWDKYIEFENGQKSWKRVANIYERILEIPLH----QLNRHFDRFKQL 195 (577)
T ss_pred HHHHhccCCCHHHHHHHHHHHHHhcccchhccHHHHHHHHHHhccccHHHHHHHHHHHHhhhhh----HhHHHHHHHHHH
Confidence 55444 44666677777765432 24455777777777777788888888877653211 1111111110
Q ss_pred -cCC------ChHHHHHHHHHHHHhccCCchHHHHHHHHHHHhcCCHHHHHHHHhhcCCCCHhHHHHHHHHHHh-cCCHH
Q 003584 348 -SNI------DLNNAKSVHSLIVKTGFEGYKFVNNALIDMYAKQGNLDCAFMVFNLMQDKDVISWTSLITGCAY-HGSYE 419 (809)
Q Consensus 348 -~~~------~~~~a~~i~~~~~~~g~~~~~~~~~~li~~y~~~g~~~~A~~~f~~~~~~~~~~~~~li~~~~~-~g~~~ 419 (809)
+.. ..++..++-...... ..-...+ +....+..-+.--.. .+..+
T Consensus 196 l~~~~~~~l~~~d~~~~l~~~~~~~-------------~~~~~~~--------------~~~e~~~~~v~~~~~~s~~l~ 248 (577)
T KOG1258|consen 196 LNQNEEKILLSIDELIQLRSDVAER-------------SKITHSQ--------------EPLEELEIGVKDSTDPSKSLT 248 (577)
T ss_pred HhcCChhhhcCHHHHHHHhhhHHhh-------------hhccccc--------------ChhHHHHHHHhhccCccchhh
Confidence 000 011111110000000 0000000 011111111110000 01111
Q ss_pred HHHHHHHHHhhcCCccCHhHHHHHHHHHhcccchhHHHHHHHHHHHh-------CCCCChhHHhHHHHHHHhcCCHHHHH
Q 003584 420 EALKYFSDMRISGICPDHVVVSSILSACAELTVLEFGQQVHAVFLKS-------GGCSSLSVDNSLVLVYAKCGCINDAN 492 (809)
Q Consensus 420 ~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~~~~~~a~~~~~~~~~~-------g~~~~~~~~~~li~~y~k~g~~~~A~ 492 (809)
++.....+.... -.. .+-..-.....+..++.-++. -..++..+|..-++--.+.|+.+.+.
T Consensus 249 ~~~~~l~~~~~~----~~~-------~~~~s~~~~~kr~~fE~~IkrpYfhvkpl~~aql~nw~~yLdf~i~~g~~~~~~ 317 (577)
T KOG1258|consen 249 EEKTILKRIVSI----HEK-------VYQKSEEEEEKRWGFEEGIKRPYFHVKPLDQAQLKNWRYYLDFEITLGDFSRVF 317 (577)
T ss_pred HHHHHHHHHHHH----HHH-------HHHhhHhHHHHHHhhhhhccccccccCcccHHHHHHHHHHhhhhhhcccHHHHH
Confidence 111111110000 000 000000111111112211211 11234556777777778888888888
Q ss_pred HHHHhcCCCC---eeechHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHhHHhhC
Q 003584 493 RVFDSMHTRD---VITWTALIMGCAQNGKGKEALQFYDQMLARGTKPDYITFVGLLFACSHAGLAENARWYFESMDKVYG 569 (809)
Q Consensus 493 ~~~~~~~~~~---~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~pd~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~ 569 (809)
-+|+...-|= ...|-..+.-....|+.+-|..++....+--.+-...+-..-..-+-..|+.+.|..+++.+.+.+
T Consensus 318 ~l~ercli~cA~Y~efWiky~~~m~~~~~~~~~~~~~~~~~~i~~k~~~~i~L~~a~f~e~~~n~~~A~~~lq~i~~e~- 396 (577)
T KOG1258|consen 318 ILFERCLIPCALYDEFWIKYARWMESSGDVSLANNVLARACKIHVKKTPIIHLLEARFEESNGNFDDAKVILQRIESEY- 396 (577)
T ss_pred HHHHHHHhHHhhhHHHHHHHHHHHHHcCchhHHHHHHHhhhhhcCCCCcHHHHHHHHHHHhhccHHHHHHHHHHHHhhC-
Confidence 8888876431 223444444444458888887777666554333233333222333567789999999999998753
Q ss_pred CCCCh-HHHHHHHHHHhhcCCHHHHH---HHHHhCcC-CCCHHHHHHHHH-----HHHhcCChhHHHHHHHHHhccCCCC
Q 003584 570 IKPGP-DHYACMIDLLGRSGKLIEAK---ALLDQMVG-EPDATVWKALLS-----ACRVHGDLELGERAANNLFELEPMN 639 (809)
Q Consensus 570 ~~p~~-~~~~~li~~~~~~g~~~eA~---~~~~~m~~-~p~~~~~~~ll~-----a~~~~g~~~~A~~~~~~~~~~~p~~ 639 (809)
|+. ..-.--+....|.|..+.+. +++..... +-+..+...+.- -+...++.+.|..++.++.+..|++
T Consensus 397 --pg~v~~~l~~~~~e~r~~~~~~~~~~~~l~s~~~~~~~~~~i~~~l~~~~~r~~~~i~~d~~~a~~~l~~~~~~~~~~ 474 (577)
T KOG1258|consen 397 --PGLVEVVLRKINWERRKGNLEDANYKNELYSSIYEGKENNGILEKLYVKFARLRYKIREDADLARIILLEANDILPDC 474 (577)
T ss_pred --CchhhhHHHHHhHHHHhcchhhhhHHHHHHHHhcccccCcchhHHHHHHHHHHHHHHhcCHHHHHHHHHHhhhcCCcc
Confidence 654 23334466778899999888 55554442 233333333332 2456688999999999999999999
Q ss_pred CccHHhHhhhhhhcCC
Q 003584 640 AMPYVQLSNMYSTAGK 655 (809)
Q Consensus 640 ~~~~~~l~~~~~~~g~ 655 (809)
-..|..+++.....+-
T Consensus 475 k~~~~~~~~~~~~~~~ 490 (577)
T KOG1258|consen 475 KVLYLELIRFELIQPS 490 (577)
T ss_pred HHHHHHHHHHHHhCCc
Confidence 9999999888776663
No 271
>PF02259 FAT: FAT domain; InterPro: IPR003151 The FAT domain is a domain present in the PIK-related kinases. Members of the family of PIK-related kinases may act as intracellular sensors that govern radial and horizontal pathways [].; GO: 0005515 protein binding
Probab=90.40 E-value=18 Score=38.15 Aligned_cols=147 Identities=14% Similarity=0.013 Sum_probs=76.5
Q ss_pred CeeechHHHHHHHhcCChHHHHHHHHHHHHCCCCC---CHHHHHHHHHHHHccCCHHHHHHHHHHhHHhhCCCCC--hHH
Q 003584 502 DVITWTALIMGCAQNGKGKEALQFYDQMLARGTKP---DYITFVGLLFACSHAGLAENARWYFESMDKVYGIKPG--PDH 576 (809)
Q Consensus 502 ~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p---d~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~--~~~ 576 (809)
...+|..++..+.+.|+++.|...+.++...+..+ +......-....-..|+..+|...++..... .+... ...
T Consensus 145 ~~~~~l~~a~~aRk~g~~~~A~~~l~~~~~~~~~~~~~~~~v~~e~akllw~~g~~~~Ai~~L~~~~~~-~~~~~~~~~~ 223 (352)
T PF02259_consen 145 LAETWLKFAKLARKAGNFQLALSALNRLFQLNPSSESLLPRVFLEYAKLLWAQGEQEEAIQKLRELLKC-RLSKNIDSIS 223 (352)
T ss_pred HHHHHHHHHHHHHHCCCcHHHHHHHHHHhccCCcccCCCcchHHHHHHHHHHcCCHHHHHHHHHHHHHH-Hhhhcccccc
Confidence 44577788888888888888888888877643222 2223333444555677788888877766652 11111 111
Q ss_pred HHHHHHHHhhcCCHHHHHHH-HHhCcCCCCHHHHHHHHHHHHhc------CChhHHHHHHHHHhccCCCCCccHHhHhhh
Q 003584 577 YACMIDLLGRSGKLIEAKAL-LDQMVGEPDATVWKALLSACRVH------GDLELGERAANNLFELEPMNAMPYVQLSNM 649 (809)
Q Consensus 577 ~~~li~~~~~~g~~~eA~~~-~~~m~~~p~~~~~~~ll~a~~~~------g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~ 649 (809)
...+...+.. ..+..... ......+.-..++..+..-+... ++.+.+...|+++.++.|.....+..++..
T Consensus 224 ~~~~~~~~~~--~~~~~~~~~~~~~~~~~~a~~~l~~a~w~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~k~~~~~a~~ 301 (352)
T PF02259_consen 224 NAELKSGLLE--SLEVISSTNLDKESKELKAKAFLLLAKWLDELYSKLSSESSDEILKYYKEATKLDPSWEKAWHSWALF 301 (352)
T ss_pred HHHHhhcccc--ccccccccchhhhhHHHHHHHHHHHHHHHHhhccccccccHHHHHHHHHHHHHhChhHHHHHHHHHHH
Confidence 1111100000 00000000 00000000112333333334444 778889999999999999877777766655
Q ss_pred hh
Q 003584 650 YS 651 (809)
Q Consensus 650 ~~ 651 (809)
+.
T Consensus 302 ~~ 303 (352)
T PF02259_consen 302 ND 303 (352)
T ss_pred HH
Confidence 43
No 272
>PF13181 TPR_8: Tetratricopeptide repeat; PDB: 3GW4_B 3MA5_C 2KCV_A 2KCL_A 3FP3_A 3LCA_A 3FP4_A 3FP2_A 1W3B_B 1ELW_A ....
Probab=90.37 E-value=0.39 Score=30.41 Aligned_cols=31 Identities=23% Similarity=0.201 Sum_probs=24.0
Q ss_pred HHHHHHHHHHhcCChhHHHHHHHHHhccCCC
Q 003584 608 VWKALLSACRVHGDLELGERAANNLFELEPM 638 (809)
Q Consensus 608 ~~~~ll~a~~~~g~~~~A~~~~~~~~~~~p~ 638 (809)
+|..+...|...|+.++|...+++.++++|+
T Consensus 3 ~~~~lg~~y~~~~~~~~A~~~~~~a~~~~~~ 33 (34)
T PF13181_consen 3 AYYNLGKIYEQLGDYEEALEYFEKALELNPD 33 (34)
T ss_dssp HHHHHHHHHHHTTSHHHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHhhCCC
Confidence 5667777788888888888888888887774
No 273
>PF13281 DUF4071: Domain of unknown function (DUF4071)
Probab=90.29 E-value=26 Score=36.79 Aligned_cols=70 Identities=14% Similarity=0.071 Sum_probs=45.9
Q ss_pred HHHHHHhcCCHHHHHHHHhhcCCC-------CHhHHHHHHHHHHh---cCCHHHHHHHHHHHhhcCCccCHhHHHHHHHH
Q 003584 377 LIDMYAKQGNLDCAFMVFNLMQDK-------DVISWTSLITGCAY---HGSYEEALKYFSDMRISGICPDHVVVSSILSA 446 (809)
Q Consensus 377 li~~y~~~g~~~~A~~~f~~~~~~-------~~~~~~~li~~~~~---~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a 446 (809)
|+-.|....+++...++.+.+... ....-....-++.+ .|+.++|++++..+....-.+++.|+..+-..
T Consensus 147 lllSyRdiqdydamI~Lve~l~~~p~~~~~~~~~i~~~yafALnRrn~~gdre~Al~il~~~l~~~~~~~~d~~gL~GRI 226 (374)
T PF13281_consen 147 LLLSYRDIQDYDAMIKLVETLEALPTCDVANQHNIKFQYAFALNRRNKPGDREKALQILLPVLESDENPDPDTLGLLGRI 226 (374)
T ss_pred HHHHhhhhhhHHHHHHHHHHhhccCccchhcchHHHHHHHHHHhhcccCCCHHHHHHHHHHHHhccCCCChHHHHHHHHH
Confidence 344477788888888888877653 11122233445556 78899999998886666566777777655544
No 274
>KOG4555 consensus TPR repeat-containing protein [Function unknown]
Probab=89.91 E-value=1.8 Score=37.00 Aligned_cols=87 Identities=15% Similarity=0.026 Sum_probs=39.8
Q ss_pred HccCCHHHHHHHHHHhHHhhCCCCChHHHHHHHHHHhhcCCHHHHHHHHHhCcCC--C-CH---HHHHHHHHHHHhcCCh
Q 003584 549 SHAGLAENARWYFESMDKVYGIKPGPDHYACMIDLLGRSGKLIEAKALLDQMVGE--P-DA---TVWKALLSACRVHGDL 622 (809)
Q Consensus 549 ~~~g~~~~a~~~~~~m~~~~~~~p~~~~~~~li~~~~~~g~~~eA~~~~~~m~~~--p-~~---~~~~~ll~a~~~~g~~ 622 (809)
+..|+++.|++.|..... -.+.....|+.-..+|.-+|+.++|++=+++...- | .. ..|-.-...|+..|+.
T Consensus 54 aE~g~Ld~AlE~F~qal~--l~P~raSayNNRAQa~RLq~~~e~ALdDLn~AleLag~~trtacqa~vQRg~lyRl~g~d 131 (175)
T KOG4555|consen 54 AEAGDLDGALELFGQALC--LAPERASAYNNRAQALRLQGDDEEALDDLNKALELAGDQTRTACQAFVQRGLLYRLLGND 131 (175)
T ss_pred HhccchHHHHHHHHHHHH--hcccchHhhccHHHHHHHcCChHHHHHHHHHHHHhcCccchHHHHHHHHHHHHHHHhCch
Confidence 344444444444444331 11123344444444444455555555444444320 1 00 1223333456666777
Q ss_pred hHHHHHHHHHhccCC
Q 003584 623 ELGERAANNLFELEP 637 (809)
Q Consensus 623 ~~A~~~~~~~~~~~p 637 (809)
+.|..-|+.+-++..
T Consensus 132 d~AR~DFe~AA~LGS 146 (175)
T KOG4555|consen 132 DAARADFEAAAQLGS 146 (175)
T ss_pred HHHHHhHHHHHHhCC
Confidence 777666666655543
No 275
>PF13176 TPR_7: Tetratricopeptide repeat; PDB: 3SF4_C 3RO3_A 3RO2_A.
Probab=89.90 E-value=0.41 Score=30.96 Aligned_cols=26 Identities=19% Similarity=0.147 Sum_probs=15.3
Q ss_pred HHHHHHHHHhcCChhHHHHHHHHHhc
Q 003584 609 WKALLSACRVHGDLELGERAANNLFE 634 (809)
Q Consensus 609 ~~~ll~a~~~~g~~~~A~~~~~~~~~ 634 (809)
|..|...|...|++++|+.++++++.
T Consensus 2 l~~Lg~~~~~~g~~~~Ai~~y~~aL~ 27 (36)
T PF13176_consen 2 LNNLGRIYRQQGDYEKAIEYYEQALA 27 (36)
T ss_dssp HHHHHHHHHHCT-HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 55566666666666666666666443
No 276
>COG4785 NlpI Lipoprotein NlpI, contains TPR repeats [General function prediction only]
Probab=89.84 E-value=8.5 Score=36.33 Aligned_cols=180 Identities=19% Similarity=0.124 Sum_probs=93.9
Q ss_pred hcCCHHHHHHHHHhcC--CCC-eeechHHHHHHHhcCChHHHHHHHHHHHHCCCCCCH-HHHHHHHHHHHccCCHHHHHH
Q 003584 484 KCGCINDANRVFDSMH--TRD-VITWTALIMGCAQNGKGKEALQFYDQMLARGTKPDY-ITFVGLLFACSHAGLAENARW 559 (809)
Q Consensus 484 k~g~~~~A~~~~~~~~--~~~-~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~pd~-~t~~~ll~a~~~~g~~~~a~~ 559 (809)
..|-..-|+--|.... .|+ +..||-+.--+...|+++.|.+.|+...+. .|.. .++..-.-++--.|++.-|.+
T Consensus 77 SlGL~~LAR~DftQaLai~P~m~~vfNyLG~Yl~~a~~fdaa~eaFds~~EL--Dp~y~Ya~lNRgi~~YY~gR~~LAq~ 154 (297)
T COG4785 77 SLGLRALARNDFSQALAIRPDMPEVFNYLGIYLTQAGNFDAAYEAFDSVLEL--DPTYNYAHLNRGIALYYGGRYKLAQD 154 (297)
T ss_pred hhhHHHHHhhhhhhhhhcCCCcHHHHHHHHHHHHhcccchHHHHHhhhHhcc--CCcchHHHhccceeeeecCchHhhHH
Confidence 3344444444444333 233 345666666667777777777777777663 3322 233222233444567776666
Q ss_pred HHHHhHHhhCCCCChHHHHHHHHHHhhcCCHHHHHHHHHhCcCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHhccCCCC
Q 003584 560 YFESMDKVYGIKPGPDHYACMIDLLGRSGKLIEAKALLDQMVGEPDATVWKALLSACRVHGDLELGERAANNLFELEPMN 639 (809)
Q Consensus 560 ~~~~m~~~~~~~p~~~~~~~li~~~~~~g~~~eA~~~~~~m~~~p~~~~~~~ll~a~~~~g~~~~A~~~~~~~~~~~p~~ 639 (809)
-+...-+.-.-+|-...|-- +-.+.-+..+|..-+.+--...|..-|+.-+-.+.-..-.+ +.+++++.+-..++
T Consensus 155 d~~~fYQ~D~~DPfR~LWLY---l~E~k~dP~~A~tnL~qR~~~~d~e~WG~~iV~~yLgkiS~--e~l~~~~~a~a~~n 229 (297)
T COG4785 155 DLLAFYQDDPNDPFRSLWLY---LNEQKLDPKQAKTNLKQRAEKSDKEQWGWNIVEFYLGKISE--ETLMERLKADATDN 229 (297)
T ss_pred HHHHHHhcCCCChHHHHHHH---HHHhhCCHHHHHHHHHHHHHhccHhhhhHHHHHHHHhhccH--HHHHHHHHhhccch
Confidence 55433322122222222222 22233455566543332222455566666555443322111 12233333222222
Q ss_pred -------CccHHhHhhhhhhcCChhHHHHHHHHHHhCC
Q 003584 640 -------AMPYVQLSNMYSTAGKWEDAARVRKLMKSRG 670 (809)
Q Consensus 640 -------~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~ 670 (809)
.++|..|+.-|...|+.++|..+|+.....+
T Consensus 230 ~~~Ae~LTEtyFYL~K~~l~~G~~~~A~~LfKLaiann 267 (297)
T COG4785 230 TSLAEHLTETYFYLGKYYLSLGDLDEATALFKLAVANN 267 (297)
T ss_pred HHHHHHHHHHHHHHHHHHhccccHHHHHHHHHHHHHHh
Confidence 3578999999999999999999999877554
No 277
>PF09205 DUF1955: Domain of unknown function (DUF1955); InterPro: IPR015288 Members of this family are found in hypothetical proteins synthesised by the Archaeal organism Sulfolobus. Their exact function has not, as yet, been determined. ; PDB: 1WY6_A.
Probab=88.77 E-value=5.5 Score=34.34 Aligned_cols=63 Identities=10% Similarity=0.147 Sum_probs=36.0
Q ss_pred HHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCcccHHHHHHHhhcCCChHHHHHHHHHHHHhcc
Q 003584 304 WNSMIVGFARQGFHKEALSLFKKMHARDIKIDDFTYPSVLNCFASNIDLNNAKSVHSLIVKTGF 367 (809)
Q Consensus 304 ~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~i~~~~~~~g~ 367 (809)
.+..++.+.+.|+-+.-.+++.++.+ +-++++..+..+..+|.+.|+..++.+++..+-+.|+
T Consensus 89 vD~ALd~lv~~~kkDqLdki~~~l~k-n~~~~p~~L~kia~Ay~klg~~r~~~ell~~ACekG~ 151 (161)
T PF09205_consen 89 VDLALDILVKQGKKDQLDKIYNELKK-NEEINPEFLVKIANAYKKLGNTREANELLKEACEKGL 151 (161)
T ss_dssp HHHHHHHHHHTT-HHHHHHHHHHH------S-HHHHHHHHHHHHHTT-HHHHHHHHHHHHHTT-
T ss_pred HHHHHHHHHHhccHHHHHHHHHHHhh-ccCCCHHHHHHHHHHHHHhcchhhHHHHHHHHHHhch
Confidence 34455666667777666667666654 2355666666666777777777777777666666654
No 278
>PF13176 TPR_7: Tetratricopeptide repeat; PDB: 3SF4_C 3RO3_A 3RO2_A.
Probab=88.67 E-value=0.6 Score=30.17 Aligned_cols=26 Identities=19% Similarity=0.317 Sum_probs=22.4
Q ss_pred cHHhHhhhhhhcCChhHHHHHHHHHH
Q 003584 642 PYVQLSNMYSTAGKWEDAARVRKLMK 667 (809)
Q Consensus 642 ~~~~l~~~~~~~g~~~~A~~~~~~m~ 667 (809)
+|..|+++|.+.|+|++|.+++++..
T Consensus 1 al~~Lg~~~~~~g~~~~Ai~~y~~aL 26 (36)
T PF13176_consen 1 ALNNLGRIYRQQGDYEKAIEYYEQAL 26 (36)
T ss_dssp HHHHHHHHHHHCT-HHHHHHHHHHHH
T ss_pred CHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 46789999999999999999999854
No 279
>PF13428 TPR_14: Tetratricopeptide repeat
Probab=88.35 E-value=0.97 Score=30.77 Aligned_cols=38 Identities=29% Similarity=0.540 Sum_probs=23.7
Q ss_pred HHHHHHHHHhhcCCHHHHHHHHHhCcC-CC-CHHHHHHHH
Q 003584 576 HYACMIDLLGRSGKLIEAKALLDQMVG-EP-DATVWKALL 613 (809)
Q Consensus 576 ~~~~li~~~~~~g~~~eA~~~~~~m~~-~p-~~~~~~~ll 613 (809)
.+..+...|.+.|++++|.++++++.. .| |...|..|.
T Consensus 3 ~~~~la~~~~~~G~~~~A~~~~~~~l~~~P~~~~a~~~La 42 (44)
T PF13428_consen 3 AWLALARAYRRLGQPDEAERLLRRALALDPDDPEAWRALA 42 (44)
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHCcCCHHHHHHhh
Confidence 455666777777777777777777664 24 344555543
No 280
>KOG2063 consensus Vacuolar assembly/sorting proteins VPS39/VAM6/VPS3 [Intracellular trafficking, secretion, and vesicular transport]
Probab=88.33 E-value=50 Score=38.87 Aligned_cols=141 Identities=12% Similarity=0.162 Sum_probs=75.2
Q ss_pred hhHHHHHhhhCCCCCCcccHHHHHHHHhhCCChHHHHHHHHHHHHCCCCCCcchHHHHHHHHhccCChHHHHHHHHHHHH
Q 003584 184 IFEAEYLFKMFPDGKNHVAWTTMITGYSQNGYGFKAIECFRDMRVEGVESNQFTFPSILTACAAVSARDFGAQVHGCILS 263 (809)
Q Consensus 184 ~~~A~~~f~~~~~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~ 263 (809)
+++...++.+-+. |..|+.-|...|+.++|++++.+....--.-|. ...+.-..+.+.+.+
T Consensus 494 vee~e~~L~k~~~------y~~Li~LY~~kg~h~~AL~ll~~l~d~~~~~d~-------------~~~~~~e~ii~YL~~ 554 (877)
T KOG2063|consen 494 VEEIETVLKKSKK------YRELIELYATKGMHEKALQLLRDLVDEDSDTDS-------------FQLDGLEKIIEYLKK 554 (877)
T ss_pred hHHHHHHHHhccc------HHHHHHHHHhccchHHHHHHHHHHhcccccccc-------------chhhhHHHHHHHHHH
Confidence 4444444444444 899999999999999999999998753100011 011112224444444
Q ss_pred hCCC--CchhHHHHHHHHHHhCCChHHHHHHHhccCCCCeeeHH-HHHHHHHhcCChhHHHHHHHHHHHCCCCCCcccHH
Q 003584 264 SGFE--ANVYVQSALIDMYAKCGDLDSARRLLEYSEIDNEVSWN-SMIVGFARQGFHKEALSLFKKMHARDIKIDDFTYP 340 (809)
Q Consensus 264 ~g~~--~~~~~~~~Li~~y~~~g~~~~A~~~f~~~~~~~~~~~~-~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~ 340 (809)
.+-+ +-...|.. +.-..+.+...++|-.-......+.+ .-+-.|......+-+...++.+....-.++..-.+
T Consensus 555 l~~~~~~Li~~y~~----wvl~~~p~~gi~Ift~~~~~~~~sis~~~Vl~~l~~~~~~l~I~YLE~li~~~~~~~~~lht 630 (877)
T KOG2063|consen 555 LGAENLDLILEYAD----WVLNKNPEAGIQIFTSEDKQEAESISRDDVLNYLKSKEPKLLIPYLEHLISDNRLTSTLLHT 630 (877)
T ss_pred hcccchhHHHHHhh----hhhccCchhheeeeeccChhhhccCCHHHHHHHhhhhCcchhHHHHHHHhHhccccchHHHH
Confidence 4422 11111111 11234455666666441110111111 12345666777778888888887766566666666
Q ss_pred HHHHHhh
Q 003584 341 SVLNCFA 347 (809)
Q Consensus 341 ~ll~~~~ 347 (809)
.++..|+
T Consensus 631 ~ll~ly~ 637 (877)
T KOG2063|consen 631 VLLKLYL 637 (877)
T ss_pred HHHHHHH
Confidence 6666554
No 281
>PF04097 Nic96: Nup93/Nic96; InterPro: IPR007231 Nup93/Nic96 is a component of the nuclear pore complex. It is required for the correct assembly of the nuclear pore complex []. In Saccharomyces cerevisiae, Nic96 has been shown to be involved in the distribution and cellular concentration of the GTPase Gsp1 []. The structure of Nic96 has revealed a mostly alpha helical structure [].; GO: 0006810 transport, 0005643 nuclear pore; PDB: 2QX5_B 2RFO_A.
Probab=88.28 E-value=14 Score=42.39 Aligned_cols=85 Identities=16% Similarity=0.078 Sum_probs=39.7
Q ss_pred HHHHhcCCHHHHHHHHHHHhhcCCccCHhHHHHHHHHHhcccchhHHHHHHHHHHHhC-CCCChhHHhHHHHHHHh---c
Q 003584 410 TGCAYHGSYEEALKYFSDMRISGICPDHVVVSSILSACAELTVLEFGQQVHAVFLKSG-GCSSLSVDNSLVLVYAK---C 485 (809)
Q Consensus 410 ~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~~~~~~a~~~~~~~~~~g-~~~~~~~~~~li~~y~k---~ 485 (809)
..+.-.|+++.|++.+.+ ..+...|.+.+...|..+.-..-.+... ..+.... -.+...-+..||..|.+ .
T Consensus 266 ~~LlLtgqFE~AI~~L~~--~~~~~~dAVH~AIaL~~~gLL~~~~~~~---~~lls~~~~~~~~ln~arLI~~Y~~~F~~ 340 (613)
T PF04097_consen 266 QVLLLTGQFEAAIEFLYR--NEFNRVDAVHFAIALAYYGLLRVSDSSS---APLLSVDPGDPPPLNFARLIGQYTRSFEI 340 (613)
T ss_dssp HHHHHTT-HHHHHHHHHT----T-HHHHHHHHHHHHHTT---------------------------HHHHHHHHHHTTTT
T ss_pred HHHHHHhhHHHHHHHHHh--hccCcccHHHHHHHHHHcCCCCCCCccc---cceeeecCCCCCCcCHHHHHHHHHHHHhc
Confidence 445567889999988876 3344667777777666554332222211 2221111 11112445667777775 3
Q ss_pred CCHHHHHHHHHhcC
Q 003584 486 GCINDANRVFDSMH 499 (809)
Q Consensus 486 g~~~~A~~~~~~~~ 499 (809)
.+..+|.+.|--+.
T Consensus 341 td~~~Al~Y~~li~ 354 (613)
T PF04097_consen 341 TDPREALQYLYLIC 354 (613)
T ss_dssp T-HHHHHHHHHGGG
T ss_pred cCHHHHHHHHHHHH
Confidence 56777777776655
No 282
>PF09613 HrpB1_HrpK: Bacterial type III secretion protein (HrpB1_HrpK); InterPro: IPR013394 This family of proteins is encoded by genes found within type III secretion operons in a limited range of species including Xanthomonas, Ralstonia and Burkholderia.
Probab=87.30 E-value=15 Score=33.19 Aligned_cols=90 Identities=20% Similarity=0.113 Sum_probs=58.3
Q ss_pred HHHHHccCCHHHHHHHHHHhHHhhCCCCChH-HHHHHHHHHhhcCCHHHHHHHHHhCcCC-CCHHHHHHHHHHHHhcCCh
Q 003584 545 LFACSHAGLAENARWYFESMDKVYGIKPGPD-HYACMIDLLGRSGKLIEAKALLDQMVGE-PDATVWKALLSACRVHGDL 622 (809)
Q Consensus 545 l~a~~~~g~~~~a~~~~~~m~~~~~~~p~~~-~~~~li~~~~~~g~~~eA~~~~~~m~~~-p~~~~~~~ll~a~~~~g~~ 622 (809)
++.-...++.+++..+++.+. -+.|... .-..-+-.+.+.|++.+|..+|+++... |....-.+|+..|.....-
T Consensus 17 ~~~al~~~~~~D~e~lL~ALr---vLRP~~~e~~~~~~~l~i~r~~w~dA~rlLr~l~~~~~~~p~~kALlA~CL~~~~D 93 (160)
T PF09613_consen 17 LSVALRLGDPDDAEALLDALR---VLRPEFPELDLFDGWLHIVRGDWDDALRLLRELEERAPGFPYAKALLALCLYALGD 93 (160)
T ss_pred HHHHHccCChHHHHHHHHHHH---HhCCCchHHHHHHHHHHHHhCCHHHHHHHHHHHhccCCCChHHHHHHHHHHHHcCC
Confidence 334456678888888887775 4556542 2223345677899999999999998754 5555566777666655544
Q ss_pred hHHHHHHHHHhccCC
Q 003584 623 ELGERAANNLFELEP 637 (809)
Q Consensus 623 ~~A~~~~~~~~~~~p 637 (809)
..=....+++++..|
T Consensus 94 ~~Wr~~A~evle~~~ 108 (160)
T PF09613_consen 94 PSWRRYADEVLESGA 108 (160)
T ss_pred hHHHHHHHHHHhcCC
Confidence 444455666666665
No 283
>COG3629 DnrI DNA-binding transcriptional activator of the SARP family [Signal transduction mechanisms]
Probab=87.01 E-value=2.9 Score=41.80 Aligned_cols=74 Identities=16% Similarity=0.160 Sum_probs=57.2
Q ss_pred hHHhHHHHHHHhcCCHHHHHHHHHhcCC---CCeeechHHHHHHHhcCChHHHHHHHHHHHH-----CCCCCCHHHHHHH
Q 003584 473 SVDNSLVLVYAKCGCINDANRVFDSMHT---RDVITWTALIMGCAQNGKGKEALQFYDQMLA-----RGTKPDYITFVGL 544 (809)
Q Consensus 473 ~~~~~li~~y~k~g~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~-----~g~~pd~~t~~~l 544 (809)
.++..++..+..+|+.+.+.+.+++... -|...|..++.+|.+.|+...|+..|+++.. .|+.|-..+....
T Consensus 154 ~~l~~lae~~~~~~~~~~~~~~l~~Li~~dp~~E~~~~~lm~~y~~~g~~~~ai~~y~~l~~~~~edlgi~P~~~~~~~y 233 (280)
T COG3629 154 KALTKLAEALIACGRADAVIEHLERLIELDPYDEPAYLRLMEAYLVNGRQSAAIRAYRQLKKTLAEELGIDPAPELRALY 233 (280)
T ss_pred HHHHHHHHHHHhcccHHHHHHHHHHHHhcCccchHHHHHHHHHHHHcCCchHHHHHHHHHHHHhhhhcCCCccHHHHHHH
Confidence 3456778888999999999998888763 3667899999999999999999999988775 4666665554443
Q ss_pred HH
Q 003584 545 LF 546 (809)
Q Consensus 545 l~ 546 (809)
..
T Consensus 234 ~~ 235 (280)
T COG3629 234 EE 235 (280)
T ss_pred HH
Confidence 33
No 284
>PRK13800 putative oxidoreductase/HEAT repeat-containing protein; Provisional
Probab=86.81 E-value=83 Score=38.22 Aligned_cols=255 Identities=10% Similarity=-0.072 Sum_probs=121.7
Q ss_pred HHHhhcCCCCHhHHHHHHHHHHhcCCHHHHHHHHHHHhhcCCccCHhHHHHHHHHHhcccchhHHHHHHHHHHHhCCCCC
Q 003584 392 MVFNLMQDKDVISWTSLITGCAYHGSYEEALKYFSDMRISGICPDHVVVSSILSACAELTVLEFGQQVHAVFLKSGGCSS 471 (809)
Q Consensus 392 ~~f~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~~~~~~a~~~~~~~~~~g~~~~ 471 (809)
.+...+.++|+..-..-+..+.+.+..+ +...+.++.. .+|...-...+.++...+........+..+++ .++
T Consensus 625 ~L~~~L~D~d~~VR~~Av~~L~~~~~~~-~~~~L~~aL~---D~d~~VR~~Aa~aL~~l~~~~~~~~~L~~~L~---~~d 697 (897)
T PRK13800 625 ELAPYLADPDPGVRRTAVAVLTETTPPG-FGPALVAALG---DGAAAVRRAAAEGLRELVEVLPPAPALRDHLG---SPD 697 (897)
T ss_pred HHHHHhcCCCHHHHHHHHHHHhhhcchh-HHHHHHHHHc---CCCHHHHHHHHHHHHHHHhccCchHHHHHHhc---CCC
Confidence 4444455666666666666666665433 4444444442 23333333444444333221111122222222 245
Q ss_pred hhHHhHHHHHHHhcCCHHHHHHHHHhcCCCCeeechHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHcc
Q 003584 472 LSVDNSLVLVYAKCGCINDANRVFDSMHTRDVITWTALIMGCAQNGKGKEALQFYDQMLARGTKPDYITFVGLLFACSHA 551 (809)
Q Consensus 472 ~~~~~~li~~y~k~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~pd~~t~~~ll~a~~~~ 551 (809)
..+-.+.++.+...+.- ....+...+..+|...-...+.++.+.+..+. +.... -.+|...-.....++...
T Consensus 698 ~~VR~~A~~aL~~~~~~-~~~~l~~~L~D~d~~VR~~Av~aL~~~~~~~~----l~~~l---~D~~~~VR~~aa~aL~~~ 769 (897)
T PRK13800 698 PVVRAAALDVLRALRAG-DAALFAAALGDPDHRVRIEAVRALVSVDDVES----VAGAA---TDENREVRIAVAKGLATL 769 (897)
T ss_pred HHHHHHHHHHHHhhccC-CHHHHHHHhcCCCHHHHHHHHHHHhcccCcHH----HHHHh---cCCCHHHHHHHHHHHHHh
Confidence 55555555555543311 12234444556666555555566655544322 12222 245555555555566655
Q ss_pred CCHHH-HHHHHHHhHHhhCCCCChHHHHHHHHHHhhcCCHHHHHHHHHhCcCCCCHHHHHHHHHHHHhcCChhHHHHHHH
Q 003584 552 GLAEN-ARWYFESMDKVYGIKPGPDHYACMIDLLGRSGKLIEAKALLDQMVGEPDATVWKALLSACRVHGDLELGERAAN 630 (809)
Q Consensus 552 g~~~~-a~~~~~~m~~~~~~~p~~~~~~~li~~~~~~g~~~eA~~~~~~m~~~p~~~~~~~ll~a~~~~g~~~~A~~~~~ 630 (809)
+..+. +...+..+.+ .++...-...+..+++.|..+.+...+..+...+|..+-..-+.++...+. +++...+.
T Consensus 770 ~~~~~~~~~~L~~ll~----D~d~~VR~aA~~aLg~~g~~~~~~~~l~~aL~d~d~~VR~~Aa~aL~~l~~-~~a~~~L~ 844 (897)
T PRK13800 770 GAGGAPAGDAVRALTG----DPDPLVRAAALAALAELGCPPDDVAAATAALRASAWQVRQGAARALAGAAA-DVAVPALV 844 (897)
T ss_pred ccccchhHHHHHHHhc----CCCHHHHHHHHHHHHhcCCcchhHHHHHHHhcCCChHHHHHHHHHHHhccc-cchHHHHH
Confidence 54332 2333333332 356666667777777777765554445555556666666666666666654 34445444
Q ss_pred HHhccCCCCCccHHhHhhhhhhcCChhHHHHHHHHHHh
Q 003584 631 NLFELEPMNAMPYVQLSNMYSTAGKWEDAARVRKLMKS 668 (809)
Q Consensus 631 ~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~ 668 (809)
.+++ +| +...-...+.++.+.+.-.++...+....+
T Consensus 845 ~~L~-D~-~~~VR~~A~~aL~~~~~~~~a~~~L~~al~ 880 (897)
T PRK13800 845 EALT-DP-HLDVRKAAVLALTRWPGDPAARDALTTALT 880 (897)
T ss_pred HHhc-CC-CHHHHHHHHHHHhccCCCHHHHHHHHHHHh
Confidence 4443 22 233444444555443223345555544443
No 285
>COG2976 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=86.40 E-value=25 Score=32.85 Aligned_cols=114 Identities=15% Similarity=0.074 Sum_probs=69.8
Q ss_pred HHHHHHHHHHHCCCCCCHHHHH--HHHHHHHccCCHHHHHHHHHHhHHhhCCCCChHHHHH-----HHHHHhhcCCHHHH
Q 003584 521 EALQFYDQMLARGTKPDYITFV--GLLFACSHAGLAENARWYFESMDKVYGIKPGPDHYAC-----MIDLLGRSGKLIEA 593 (809)
Q Consensus 521 ~A~~l~~~m~~~g~~pd~~t~~--~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~~~~~~~-----li~~~~~~g~~~eA 593 (809)
+.....+++....-+....++. .+...+...|++++|...++..... |..+.+.. |.......|.+++|
T Consensus 70 ~~~~~~ekf~~~n~~t~Ya~laaL~lAk~~ve~~~~d~A~aqL~~~l~~----t~De~lk~l~~lRLArvq~q~~k~D~A 145 (207)
T COG2976 70 KSIAAAEKFVQANGKTIYAVLAALELAKAEVEANNLDKAEAQLKQALAQ----TKDENLKALAALRLARVQLQQKKADAA 145 (207)
T ss_pred hhHHHHHHHHhhccccHHHHHHHHHHHHHHHhhccHHHHHHHHHHHHcc----chhHHHHHHHHHHHHHHHHHhhhHHHH
Confidence 4455555665542122222222 2344577788888888887755422 33333333 45567788999999
Q ss_pred HHHHHhCcCCC-CHHHHHHHHHHHHhcCChhHHHHHHHHHhccCCC
Q 003584 594 KALLDQMVGEP-DATVWKALLSACRVHGDLELGERAANNLFELEPM 638 (809)
Q Consensus 594 ~~~~~~m~~~p-~~~~~~~ll~a~~~~g~~~~A~~~~~~~~~~~p~ 638 (809)
+..++....+. ....-..-..++...|+.++|...|+++++.+++
T Consensus 146 L~~L~t~~~~~w~~~~~elrGDill~kg~k~~Ar~ay~kAl~~~~s 191 (207)
T COG2976 146 LKTLDTIKEESWAAIVAELRGDILLAKGDKQEARAAYEKALESDAS 191 (207)
T ss_pred HHHHhccccccHHHHHHHHhhhHHHHcCchHHHHHHHHHHHHccCC
Confidence 99987765321 1222333456788889999999999998888754
No 286
>PF04097 Nic96: Nup93/Nic96; InterPro: IPR007231 Nup93/Nic96 is a component of the nuclear pore complex. It is required for the correct assembly of the nuclear pore complex []. In Saccharomyces cerevisiae, Nic96 has been shown to be involved in the distribution and cellular concentration of the GTPase Gsp1 []. The structure of Nic96 has revealed a mostly alpha helical structure [].; GO: 0006810 transport, 0005643 nuclear pore; PDB: 2QX5_B 2RFO_A.
Probab=86.39 E-value=68 Score=36.85 Aligned_cols=47 Identities=23% Similarity=0.277 Sum_probs=29.5
Q ss_pred cccHHHHHHHHhhCCChHHHHHHHHHHHHCCCCCCcchHHHHHHHHhcc
Q 003584 200 HVAWTTMITGYSQNGYGFKAIECFRDMRVEGVESNQFTFPSILTACAAV 248 (809)
Q Consensus 200 ~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~~~~~~ 248 (809)
...| ++|--+.|.|++++|.++..+... +.......|...+..+...
T Consensus 112 ~p~W-a~Iyy~LR~G~~~~A~~~~~~~~~-~~~~~~~~f~~~l~~~~~s 158 (613)
T PF04097_consen 112 DPIW-ALIYYCLRCGDYDEALEVANENRN-QFQKIERSFPTYLKAYASS 158 (613)
T ss_dssp EEHH-HHHHHHHTTT-HHHHHHHHHHTGG-GS-TTTTHHHHHHHHCTTT
T ss_pred CccH-HHHHHHHhcCCHHHHHHHHHHhhh-hhcchhHHHHHHHHHHHhC
Confidence 3345 456667788888888888755543 3455566777777777654
No 287
>COG3629 DnrI DNA-binding transcriptional activator of the SARP family [Signal transduction mechanisms]
Probab=85.99 E-value=2.6 Score=42.02 Aligned_cols=61 Identities=23% Similarity=0.329 Sum_probs=44.8
Q ss_pred HHHHHHHHHHhcCChhHHHHHHHHHhccCCCCCccHHhHhhhhhhcCChhHHHHHHHHHHh
Q 003584 608 VWKALLSACRVHGDLELGERAANNLFELEPMNAMPYVQLSNMYSTAGKWEDAARVRKLMKS 668 (809)
Q Consensus 608 ~~~~ll~a~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~ 668 (809)
++..++.++...|+.+.+...++++++.+|-+...|..+..+|...|+...|+..++.+..
T Consensus 155 ~l~~lae~~~~~~~~~~~~~~l~~Li~~dp~~E~~~~~lm~~y~~~g~~~~ai~~y~~l~~ 215 (280)
T COG3629 155 ALTKLAEALIACGRADAVIEHLERLIELDPYDEPAYLRLMEAYLVNGRQSAAIRAYRQLKK 215 (280)
T ss_pred HHHHHHHHHHhcccHHHHHHHHHHHHhcCccchHHHHHHHHHHHHcCCchHHHHHHHHHHH
Confidence 4555666667777777777777777777777777777777777777777777777777765
No 288
>KOG1941 consensus Acetylcholine receptor-associated protein of the synapse (rapsyn) [Extracellular structures]
Probab=85.81 E-value=34 Score=35.16 Aligned_cols=52 Identities=19% Similarity=0.060 Sum_probs=26.7
Q ss_pred HHHHHhcccchhHHHHHHHHHHHhCC-----CCChhHHhHHHHHHHhcCCHHHHHHH
Q 003584 443 ILSACAELTVLEFGQQVHAVFLKSGG-----CSSLSVDNSLVLVYAKCGCINDANRV 494 (809)
Q Consensus 443 ll~a~~~~~~~~~a~~~~~~~~~~g~-----~~~~~~~~~li~~y~k~g~~~~A~~~ 494 (809)
+-.+....+.++++.+.++.+.+... .....++-+|...|++..++++|.-.
T Consensus 128 ~~~Ahlgls~fq~~Lesfe~A~~~A~~~~D~~LElqvcv~Lgslf~~l~D~~Kal~f 184 (518)
T KOG1941|consen 128 MGNAHLGLSVFQKALESFEKALRYAHNNDDAMLELQVCVSLGSLFAQLKDYEKALFF 184 (518)
T ss_pred HHHHhhhHHHHHHHHHHHHHHHHHhhccCCceeeeehhhhHHHHHHHHHhhhHHhhh
Confidence 33455555556666665555544211 11234555666666666666655443
No 289
>PF09613 HrpB1_HrpK: Bacterial type III secretion protein (HrpB1_HrpK); InterPro: IPR013394 This family of proteins is encoded by genes found within type III secretion operons in a limited range of species including Xanthomonas, Ralstonia and Burkholderia.
Probab=85.45 E-value=2.5 Score=38.11 Aligned_cols=57 Identities=23% Similarity=0.236 Sum_probs=40.9
Q ss_pred HHHHhcCChhHHHHHHHHHhccCCCCCccHHhHhhhhhhcCChhHHHHHHHHHHhCC
Q 003584 614 SACRVHGDLELGERAANNLFELEPMNAMPYVQLSNMYSTAGKWEDAARVRKLMKSRG 670 (809)
Q Consensus 614 ~a~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~ 670 (809)
+.-..+++.+.++.++..+.-+.|..+..-..-++++...|+|.+|.++++.+.+..
T Consensus 18 ~~al~~~~~~D~e~lL~ALrvLRP~~~e~~~~~~~l~i~r~~w~dA~rlLr~l~~~~ 74 (160)
T PF09613_consen 18 SVALRLGDPDDAEALLDALRVLRPEFPELDLFDGWLHIVRGDWDDALRLLRELEERA 74 (160)
T ss_pred HHHHccCChHHHHHHHHHHHHhCCCchHHHHHHHHHHHHhCCHHHHHHHHHHHhccC
Confidence 333456677777777777777777777777777777777777777777777766553
No 290
>KOG2396 consensus HAT (Half-A-TPR) repeat-containing protein [General function prediction only]
Probab=85.42 E-value=58 Score=35.15 Aligned_cols=103 Identities=17% Similarity=0.157 Sum_probs=75.9
Q ss_pred CCCCHHHHH-HHHHHHHccCCHHHHHHHHHHhHHhhCCCCChHHHHHHHHH---HhhcCCHHHHHHHHHhCcC--CCCHH
Q 003584 534 TKPDYITFV-GLLFACSHAGLAENARWYFESMDKVYGIKPGPDHYACMIDL---LGRSGKLIEAKALLDQMVG--EPDAT 607 (809)
Q Consensus 534 ~~pd~~t~~-~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~~~~~~~li~~---~~~~g~~~eA~~~~~~m~~--~p~~~ 607 (809)
..|+..|+. .++.-+-..|-..+|...+..+.. --+|+...|..||.. ...+| +..+.++++.|.. -.|+.
T Consensus 455 ~~~~~~tl~s~~l~~~~e~~~~~~ark~y~~l~~--lpp~sl~l~r~miq~e~~~~sc~-l~~~r~~yd~a~~~fg~d~~ 531 (568)
T KOG2396|consen 455 IGADSVTLKSKYLDWAYESGGYKKARKVYKSLQE--LPPFSLDLFRKMIQFEKEQESCN-LANIREYYDRALREFGADSD 531 (568)
T ss_pred cCCceeehhHHHHHHHHHhcchHHHHHHHHHHHh--CCCccHHHHHHHHHHHhhHhhcC-chHHHHHHHHHHHHhCCChH
Confidence 577887765 577777888889999999988864 344566778777754 33444 7778888888774 26788
Q ss_pred HHHHHHHHHHhcCChhHHHHHHHHHhc-cCCCC
Q 003584 608 VWKALLSACRVHGDLELGERAANNLFE-LEPMN 639 (809)
Q Consensus 608 ~~~~ll~a~~~~g~~~~A~~~~~~~~~-~~p~~ 639 (809)
.|...+.--..+|..+.+-.++.++.+ ++|..
T Consensus 532 lw~~y~~~e~~~g~~en~~~~~~ra~ktl~~~~ 564 (568)
T KOG2396|consen 532 LWMDYMKEELPLGRPENCGQIYWRAMKTLQGES 564 (568)
T ss_pred HHHHHHHhhccCCCcccccHHHHHHHHhhChhh
Confidence 888888888888888888888877765 55543
No 291
>KOG4648 consensus Uncharacterized conserved protein, contains LRR repeats [Function unknown]
Probab=85.28 E-value=1.2 Score=44.58 Aligned_cols=110 Identities=12% Similarity=0.076 Sum_probs=77.6
Q ss_pred HHHHHHccCCHHHHHHHHHHhHHhhCCCC-ChHHHHHHHHHHhhcCCHHHHHHHHHhCcC--CCCHHHHHHHHHHHHhcC
Q 003584 544 LLFACSHAGLAENARWYFESMDKVYGIKP-GPDHYACMIDLLGRSGKLIEAKALLDQMVG--EPDATVWKALLSACRVHG 620 (809)
Q Consensus 544 ll~a~~~~g~~~~a~~~~~~m~~~~~~~p-~~~~~~~li~~~~~~g~~~eA~~~~~~m~~--~p~~~~~~~ll~a~~~~g 620 (809)
-.+-|.+.|.+++|+..|.... .+.| +...|..-..+|.+..++..|..=-+.... +.-.-.|.--+.+-...|
T Consensus 103 ~GN~yFKQgKy~EAIDCYs~~i---a~~P~NpV~~~NRA~AYlk~K~FA~AE~DC~~AiaLd~~Y~KAYSRR~~AR~~Lg 179 (536)
T KOG4648|consen 103 RGNTYFKQGKYEEAIDCYSTAI---AVYPHNPVYHINRALAYLKQKSFAQAEEDCEAAIALDKLYVKAYSRRMQARESLG 179 (536)
T ss_pred hhhhhhhccchhHHHHHhhhhh---ccCCCCccchhhHHHHHHHHHHHHHHHHhHHHHHHhhHHHHHHHHHHHHHHHHHh
Confidence 3566889999999999997655 5566 777888888899999998877765555442 112235666666666778
Q ss_pred ChhHHHHHHHHHhccCCCCCccHHhHhhhhhhcCChhHHH
Q 003584 621 DLELGERAANNLFELEPMNAMPYVQLSNMYSTAGKWEDAA 660 (809)
Q Consensus 621 ~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~ 660 (809)
+..+|.+-++..++++|++.. |-..|.......|+.
T Consensus 180 ~~~EAKkD~E~vL~LEP~~~E----LkK~~a~i~Sl~E~~ 215 (536)
T KOG4648|consen 180 NNMEAKKDCETVLALEPKNIE----LKKSLARINSLRERK 215 (536)
T ss_pred hHHHHHHhHHHHHhhCcccHH----HHHHHHHhcchHhhh
Confidence 999999999999999998654 333344444444443
No 292
>COG5107 RNA14 Pre-mRNA 3'-end processing (cleavage and polyadenylation) factor [RNA processing and modification]
Probab=85.26 E-value=55 Score=34.73 Aligned_cols=151 Identities=13% Similarity=0.105 Sum_probs=112.4
Q ss_pred CCHHHHHHHHHhcCCCCeeechHHHHHHHhcCChHHHHHHHHHHHHCC-CCCCHHHHHHHHHHHHccCCHHHHHHHHHHh
Q 003584 486 GCINDANRVFDSMHTRDVITWTALIMGCAQNGKGKEALQFYDQMLARG-TKPDYITFVGLLFACSHAGLAENARWYFESM 564 (809)
Q Consensus 486 g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g-~~pd~~t~~~ll~a~~~~g~~~~a~~~~~~m 564 (809)
|+++.-.+++-+-..+=...|...++.-.+..-.+.|..+|-+..+.| +.++...+++++.-++ .|+...|..+|+.=
T Consensus 380 ~N~e~~~Ell~kr~~k~t~v~C~~~N~v~r~~Gl~aaR~~F~k~rk~~~~~h~vyi~~A~~E~~~-~~d~~ta~~ifelG 458 (660)
T COG5107 380 NNFEYSKELLLKRINKLTFVFCVHLNYVLRKRGLEAARKLFIKLRKEGIVGHHVYIYCAFIEYYA-TGDRATAYNIFELG 458 (660)
T ss_pred CCccccHHHHHHHHhhhhhHHHHHHHHHHHHhhHHHHHHHHHHHhccCCCCcceeeeHHHHHHHh-cCCcchHHHHHHHH
Confidence 334333333333233445678888888888888899999999999999 5677778888887655 57888899999765
Q ss_pred HHhhCCCCChHHH-HHHHHHHhhcCCHHHHHHHHHhCcCC--CC--HHHHHHHHHHHHhcCChhHHHHHHHHHhccCCCC
Q 003584 565 DKVYGIKPGPDHY-ACMIDLLGRSGKLIEAKALLDQMVGE--PD--ATVWKALLSACRVHGDLELGERAANNLFELEPMN 639 (809)
Q Consensus 565 ~~~~~~~p~~~~~-~~li~~~~~~g~~~eA~~~~~~m~~~--p~--~~~~~~ll~a~~~~g~~~~A~~~~~~~~~~~p~~ 639 (809)
... -||...| .-.++-+.+-++-+.|..+|+....+ .+ ..+|..++.--..-|+...+..+-+++.++-|..
T Consensus 459 l~~---f~d~~~y~~kyl~fLi~inde~naraLFetsv~r~~~~q~k~iy~kmi~YEs~~G~lN~v~sLe~rf~e~~pQe 535 (660)
T COG5107 459 LLK---FPDSTLYKEKYLLFLIRINDEENARALFETSVERLEKTQLKRIYDKMIEYESMVGSLNNVYSLEERFRELVPQE 535 (660)
T ss_pred HHh---CCCchHHHHHHHHHHHHhCcHHHHHHHHHHhHHHHHHhhhhHHHHHHHHHHHhhcchHHHHhHHHHHHHHcCcH
Confidence 543 2444444 35667788999999999999966542 33 4589999999999999999999989999988875
Q ss_pred C
Q 003584 640 A 640 (809)
Q Consensus 640 ~ 640 (809)
.
T Consensus 536 n 536 (660)
T COG5107 536 N 536 (660)
T ss_pred h
Confidence 3
No 293
>PRK11619 lytic murein transglycosylase; Provisional
Probab=85.16 E-value=79 Score=36.46 Aligned_cols=74 Identities=11% Similarity=0.055 Sum_probs=40.0
Q ss_pred HHHHHHHhcCCHHHHHHHHhhcCCCCHhHHHHHHHHHHhcCCHHHHHHHHHHHhhcCCccCHhHHHHHHHHHhccc
Q 003584 376 ALIDMYAKQGNLDCAFMVFNLMQDKDVISWTSLITGCAYHGSYEEALKYFSDMRISGICPDHVVVSSILSACAELT 451 (809)
Q Consensus 376 ~li~~y~~~g~~~~A~~~f~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~~ 451 (809)
..+..+.+.+++.....++..- ..+...-.....+....|+.++|....+.+-..|- ..+..-..++..+.+.|
T Consensus 104 ~~l~~La~~~~w~~~~~~~~~~-p~~~~~~c~~~~A~~~~G~~~~A~~~a~~lW~~g~-~~p~~cd~l~~~~~~~g 177 (644)
T PRK11619 104 RFVNELARREDWRGLLAFSPEK-PKPVEARCNYYYAKWATGQQQEAWQGAKELWLTGK-SLPNACDKLFSVWQQSG 177 (644)
T ss_pred HHHHHHHHccCHHHHHHhcCCC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHhccCC-CCChHHHHHHHHHHHcC
Confidence 3444455667777766633222 23444455566667777777777666666655442 22334444454444333
No 294
>PF13170 DUF4003: Protein of unknown function (DUF4003)
Probab=84.75 E-value=11 Score=38.47 Aligned_cols=92 Identities=16% Similarity=0.209 Sum_probs=54.4
Q ss_pred HHHHHHHHHhcCC-------CCeeechHHHHHHHhcCC----hHHHHHHHHHHHHCCCCCCHH--HHHHHHHHHHccCC-
Q 003584 488 INDANRVFDSMHT-------RDVITWTALIMGCAQNGK----GKEALQFYDQMLARGTKPDYI--TFVGLLFACSHAGL- 553 (809)
Q Consensus 488 ~~~A~~~~~~~~~-------~~~~~~~~li~~~~~~g~----~~~A~~l~~~m~~~g~~pd~~--t~~~ll~a~~~~g~- 553 (809)
...|.++|+.|.+ ++-..+..|+.. ..++ .+++..+|+.+.+.|+..+.. ....++..+.....
T Consensus 119 ~~ra~~iy~~mKk~H~fLTs~~D~~~a~lLA~--~~~~~e~l~~~~E~~Y~~L~~~~f~kgn~LQ~LS~iLaL~~~~~~~ 196 (297)
T PF13170_consen 119 IQRAKEIYKEMKKKHPFLTSPEDYPFAALLAM--TSEDVEELAERMEQCYQKLADAGFKKGNDLQFLSHILALSEGDDQE 196 (297)
T ss_pred HHHHHHHHHHHHHhCccccCccchhHHHHHhc--ccccHHHHHHHHHHHHHHHHHhCCCCCcHHHHHHHHHHhccccchH
Confidence 3455666666652 233444444433 2222 356778888888888776543 33344433332222
Q ss_pred -HHHHHHHHHHhHHhhCCCCChHHHHHHHH
Q 003584 554 -AENARWYFESMDKVYGIKPGPDHYACMID 582 (809)
Q Consensus 554 -~~~a~~~~~~m~~~~~~~p~~~~~~~li~ 582 (809)
+.++.++++.+.+. ++++...+|..+.-
T Consensus 197 ~v~r~~~l~~~l~~~-~~kik~~~yp~lGl 225 (297)
T PF13170_consen 197 KVARVIELYNALKKN-GVKIKYMHYPTLGL 225 (297)
T ss_pred HHHHHHHHHHHHHHc-CCccccccccHHHH
Confidence 45778888888776 99988888876643
No 295
>KOG1585 consensus Protein required for fusion of vesicles in vesicular transport, gamma-SNAP [Intracellular trafficking, secretion, and vesicular transport]
Probab=84.31 E-value=42 Score=32.58 Aligned_cols=144 Identities=17% Similarity=0.174 Sum_probs=85.3
Q ss_pred HHhHHHHHHHhcCCHHHHHHHHHhcCCCCeeechHHHHHHHhcCChHHHHHHHHHHHHCCC--CCCHH---HHHHHHHHH
Q 003584 474 VDNSLVLVYAKCGCINDANRVFDSMHTRDVITWTALIMGCAQNGKGKEALQFYDQMLARGT--KPDYI---TFVGLLFAC 548 (809)
Q Consensus 474 ~~~~li~~y~k~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~--~pd~~---t~~~ll~a~ 548 (809)
.++--..+|..+|.++.|-..+++..+ ...+-++++|+++|++...-=. ..+.. -+..+-..+
T Consensus 93 l~eKAs~lY~E~GspdtAAmaleKAak------------~lenv~Pd~AlqlYqralavve~~dr~~ma~el~gk~sr~l 160 (308)
T KOG1585|consen 93 LYEKASELYVECGSPDTAAMALEKAAK------------ALENVKPDDALQLYQRALAVVEEDDRDQMAFELYGKCSRVL 160 (308)
T ss_pred HHHHHHHHHHHhCCcchHHHHHHHHHH------------HhhcCCHHHHHHHHHHHHHHHhccchHHHHHHHHHHhhhHh
Confidence 345556778888888877776665421 2345567888888877654200 11111 233344456
Q ss_pred HccCCHHHHHHHHHHhHH---hhCCCCCh-HHHHHHHHHHhhcCCHHHHHHHHHhCcC------CCCHHHHHHHHHHHHh
Q 003584 549 SHAGLAENARWYFESMDK---VYGIKPGP-DHYACMIDLLGRSGKLIEAKALLDQMVG------EPDATVWKALLSACRV 618 (809)
Q Consensus 549 ~~~g~~~~a~~~~~~m~~---~~~~~p~~-~~~~~li~~~~~~g~~~eA~~~~~~m~~------~p~~~~~~~ll~a~~~ 618 (809)
.+...+++|-..+..-.. ...--|+. ..|...|-.|.-..++..|...++.... ..|..+...|+.+|-
T Consensus 161 Vrl~kf~Eaa~a~lKe~~~~~~~~~y~~~~k~~va~ilv~L~~~Dyv~aekc~r~~~qip~f~~sed~r~lenLL~ayd- 239 (308)
T KOG1585|consen 161 VRLEKFTEAATAFLKEGVAADKCDAYNSQCKAYVAAILVYLYAHDYVQAEKCYRDCSQIPAFLKSEDSRSLENLLTAYD- 239 (308)
T ss_pred hhhHHhhHHHHHHHHhhhHHHHHhhcccHHHHHHHHHHHHhhHHHHHHHHHHhcchhcCccccChHHHHHHHHHHHHhc-
Confidence 667777777665543211 01111222 3455566667778899999999988332 235558888888874
Q ss_pred cCChhHHHHHHH
Q 003584 619 HGDLELGERAAN 630 (809)
Q Consensus 619 ~g~~~~A~~~~~ 630 (809)
.|+.++...++.
T Consensus 240 ~gD~E~~~kvl~ 251 (308)
T KOG1585|consen 240 EGDIEEIKKVLS 251 (308)
T ss_pred cCCHHHHHHHHc
Confidence 567777666553
No 296
>TIGR02508 type_III_yscG type III secretion protein, YscG family. YscG is a molecular chaperone for YscE, where both are part of the type III secretion system that in Yersinia is designated Ysc (Yersinia secretion). The secretion system delivers effector proteins, designate Yops (Yersinia outer proteins) in Yersinia. This family consists of YscG of Yersinia, and functionally equivalent type III secretion machinery protein in other species: AscG in Aeromonas, LscG in Photorhabdus luminescens, etc.
Probab=84.30 E-value=8.4 Score=31.34 Aligned_cols=58 Identities=24% Similarity=0.303 Sum_probs=43.3
Q ss_pred HHhcCCHHHHHHHHHhcCCCCeeechHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHH
Q 003584 482 YAKCGCINDANRVFDSMHTRDVITWTALIMGCAQNGKGKEALQFYDQMLARGTKPDYITFV 542 (809)
Q Consensus 482 y~k~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~pd~~t~~ 542 (809)
+...|++++|..+.+.+..||+..|-++-. .+.|..+++..-+.+|..+| .|...+|.
T Consensus 49 LmNrG~Yq~Al~l~~~~~~pdlepw~ALce--~rlGl~s~l~~rl~rla~sg-~p~lq~Fa 106 (115)
T TIGR02508 49 LMNRGDYQSALQLGNKLCYPDLEPWLALCE--WRLGLGSALESRLNRLAASG-DPRLQTFV 106 (115)
T ss_pred HHccchHHHHHHhcCCCCCchHHHHHHHHH--HhhccHHHHHHHHHHHHhCC-CHHHHHHH
Confidence 456788999999998888899998887754 36677777777777777776 55555554
No 297
>TIGR02561 HrpB1_HrpK type III secretion protein HrpB1/HrpK. This gene is found within type III secretion operons in a limited range of species including Xanthomonas, Ralstonia and Burkholderia.
Probab=84.24 E-value=4.5 Score=35.81 Aligned_cols=54 Identities=17% Similarity=0.080 Sum_probs=46.6
Q ss_pred hcCChhHHHHHHHHHhccCCCCCccHHhHhhhhhhcCChhHHHHHHHHHHhCCC
Q 003584 618 VHGDLELGERAANNLFELEPMNAMPYVQLSNMYSTAGKWEDAARVRKLMKSRGI 671 (809)
Q Consensus 618 ~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~ 671 (809)
..++.++++.++..+.-+.|+.+..-..-++++...|+|+||.++++...+.+.
T Consensus 22 ~~~d~~D~e~lLdALrvLrP~~~e~d~~dg~l~i~rg~w~eA~rvlr~l~~~~~ 75 (153)
T TIGR02561 22 RSADPYDAQAMLDALRVLRPNLKELDMFDGWLLIARGNYDEAARILRELLSSAG 75 (153)
T ss_pred hcCCHHHHHHHHHHHHHhCCCccccchhHHHHHHHcCCHHHHHHHHHhhhccCC
Confidence 478888899999888889999988888889999999999999999988876653
No 298
>PF07035 Mic1: Colon cancer-associated protein Mic1-like; InterPro: IPR009755 This entry represents the C terminus (approximately 160 residues) of a number of proteins that resemble colon cancer-associated protein Mic1.
Probab=83.93 E-value=35 Score=31.33 Aligned_cols=132 Identities=12% Similarity=0.103 Sum_probs=71.1
Q ss_pred HHHHHHHHCCCCCCcchHHHHHHHHhccCChHHHHHHHHHHHHhCCCCchhH-HHHHHHHHHhC-CChHHHHHHHhccCC
Q 003584 221 ECFRDMRVEGVESNQFTFPSILTACAAVSARDFGAQVHGCILSSGFEANVYV-QSALIDMYAKC-GDLDSARRLLEYSEI 298 (809)
Q Consensus 221 ~l~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~-~~~Li~~y~~~-g~~~~A~~~f~~~~~ 298 (809)
+..+.+.+.|++|+...+..+++.+.+.|.+..-. ++++.++-+|... .-.|++.-.+. .-..-|.+++.++.
T Consensus 15 EYirSl~~~~i~~~~~L~~lli~lLi~~~~~~~L~----qllq~~Vi~DSk~lA~~LLs~~~~~~~~~Ql~lDMLkRL~- 89 (167)
T PF07035_consen 15 EYIRSLNQHNIPVQHELYELLIDLLIRNGQFSQLH----QLLQYHVIPDSKPLACQLLSLGNQYPPAYQLGLDMLKRLG- 89 (167)
T ss_pred HHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHHHHH----HHHhhcccCCcHHHHHHHHHhHccChHHHHHHHHHHHHhh-
Confidence 44555556677777777777777777777655433 3344444444333 22222221111 01223334444333
Q ss_pred CCeeeHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCcccHHHHHHHhhcCCChHHHHHHHHHHHH
Q 003584 299 DNEVSWNSMIVGFARQGFHKEALSLFKKMHARDIKIDDFTYPSVLNCFASNIDLNNAKSVHSLIVK 364 (809)
Q Consensus 299 ~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~i~~~~~~ 364 (809)
..+..++..+...|++-+|+++.+.... .+......++.+..+.+|...--.++....+
T Consensus 90 ---~~~~~iievLL~~g~vl~ALr~ar~~~~----~~~~~~~~fLeAA~~~~D~~lf~~V~~ff~~ 148 (167)
T PF07035_consen 90 ---TAYEEIIEVLLSKGQVLEALRYARQYHK----VDSVPARKFLEAAANSNDDQLFYAVFRFFEE 148 (167)
T ss_pred ---hhHHHHHHHHHhCCCHHHHHHHHHHcCC----cccCCHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 2456677778888888888888776522 2333345566666666665555555555444
No 299
>KOG4648 consensus Uncharacterized conserved protein, contains LRR repeats [Function unknown]
Probab=83.84 E-value=3.1 Score=41.83 Aligned_cols=86 Identities=19% Similarity=0.159 Sum_probs=60.4
Q ss_pred HHHHHhcCChHHHHHHHHHHHHCCCCC-CHHHHHHHHHHHHccCCHHHHHHHHHHhHHhhCCCCChHHHHHHHHHHhhcC
Q 003584 510 IMGCAQNGKGKEALQFYDQMLARGTKP-DYITFVGLLFACSHAGLAENARWYFESMDKVYGIKPGPDHYACMIDLLGRSG 588 (809)
Q Consensus 510 i~~~~~~g~~~~A~~l~~~m~~~g~~p-d~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~~~~~~~li~~~~~~g 588 (809)
.+-|.++|.+++|+..|.+... +.| |.+++..-..||.+...+..|..-....... -...+.+|.|.|
T Consensus 104 GN~yFKQgKy~EAIDCYs~~ia--~~P~NpV~~~NRA~AYlk~K~FA~AE~DC~~AiaL---------d~~Y~KAYSRR~ 172 (536)
T KOG4648|consen 104 GNTYFKQGKYEEAIDCYSTAIA--VYPHNPVYHINRALAYLKQKSFAQAEEDCEAAIAL---------DKLYVKAYSRRM 172 (536)
T ss_pred hhhhhhccchhHHHHHhhhhhc--cCCCCccchhhHHHHHHHHHHHHHHHHhHHHHHHh---------hHHHHHHHHHHH
Confidence 3569999999999999998877 567 8999999999999999988887766554421 123456666654
Q ss_pred -------CHHHHHHHHHhCcC-CCCH
Q 003584 589 -------KLIEAKALLDQMVG-EPDA 606 (809)
Q Consensus 589 -------~~~eA~~~~~~m~~-~p~~ 606 (809)
+++||.+=.+.... +|+.
T Consensus 173 ~AR~~Lg~~~EAKkD~E~vL~LEP~~ 198 (536)
T KOG4648|consen 173 QARESLGNNMEAKKDCETVLALEPKN 198 (536)
T ss_pred HHHHHHhhHHHHHHhHHHHHhhCccc
Confidence 45555554444432 4553
No 300
>PF10602 RPN7: 26S proteasome subunit RPN7; InterPro: IPR019585 This entry represents the regulatory subunit RPN7 (known as the non-ATPase regulatory subunit 6 in higher eukaryotes) of the 26S proteasome. This entry also matches the evolutionarily related subunit 1 of the COP9 signalosome complex (CSN) from Arabidopsis []. The 26S proteasome plays a major role in ATP-dependent degradation of ubiquitinated proteins. Substrate specificity is conferred by the regulatory particle (RP), which can dissociate into stable lid and base subcomplexes. The regulatory subunit RPN7 is one of the lid subunits of the 26S proteasome and has been shown in Saccharomyces cerevisiae (Baker's yeast) to be required for structural integrity []. The COP9 signalosome is a conserved protein complex composed of eight subunits, where Individual subunits of the complex have been linked to various signal transduction pathways leading to gene expression and cell cycle control []. The overall organisation and the amino acid sequences of the COP9 signalosome subunits resemble the lid subcomplex of the 19 S regulatory particle for the 26 S proteasome []. COP9 subunit 1 (CSN1 or GPS1) of the COP9 complex is an essential subunit of the complex with regard to both structural integrity and functionality. The N-terminal region of subunit 1 (CSN1-N) can inhibit c-fos expression from either a transfected template or a chromosomal transgene (fos-lacZ), and may contain the activity domain that confers most of the repression functions of CSN1. The C-terminal region of subunit 1 (CSN1-C) allows integration of the protein into the COP9 signalosome.
Probab=83.73 E-value=12 Score=34.87 Aligned_cols=94 Identities=16% Similarity=0.095 Sum_probs=48.1
Q ss_pred chHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHH--HHHHHHHHHHccCCHHHHHHHHHHhHHhhCC--CCC----hHHH
Q 003584 506 WTALIMGCAQNGKGKEALQFYDQMLARGTKPDYI--TFVGLLFACSHAGLAENARWYFESMDKVYGI--KPG----PDHY 577 (809)
Q Consensus 506 ~~~li~~~~~~g~~~~A~~l~~~m~~~g~~pd~~--t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~--~p~----~~~~ 577 (809)
+..+..-|.+.|+.++|++.|.++.+....|... .+..++..+...+++..+..+.........- +++ ...|
T Consensus 39 ~~~l~~~~~~~Gd~~~A~k~y~~~~~~~~~~~~~id~~l~~irv~i~~~d~~~v~~~i~ka~~~~~~~~d~~~~nrlk~~ 118 (177)
T PF10602_consen 39 LEDLADHYCKIGDLEEALKAYSRARDYCTSPGHKIDMCLNVIRVAIFFGDWSHVEKYIEKAESLIEKGGDWERRNRLKVY 118 (177)
T ss_pred HHHHHHHHHHhhhHHHHHHHHHHHhhhcCCHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHhccchHHHHHHHHHH
Confidence 3445555666666666666666665544444432 3445555566666666666555544332111 111 1223
Q ss_pred HHHHHHHhhcCCHHHHHHHHHhCc
Q 003584 578 ACMIDLLGRSGKLIEAKALLDQMV 601 (809)
Q Consensus 578 ~~li~~~~~~g~~~eA~~~~~~m~ 601 (809)
..|. +...|++.+|-+.|-...
T Consensus 119 ~gL~--~l~~r~f~~AA~~fl~~~ 140 (177)
T PF10602_consen 119 EGLA--NLAQRDFKEAAELFLDSL 140 (177)
T ss_pred HHHH--HHHhchHHHHHHHHHccC
Confidence 3332 234567777777776655
No 301
>PF13170 DUF4003: Protein of unknown function (DUF4003)
Probab=83.11 E-value=26 Score=35.80 Aligned_cols=60 Identities=13% Similarity=0.070 Sum_probs=31.1
Q ss_pred HHHHHHHHHHhhcCCccCH--hHHHHHHHHHhcccc--hhHHHHHHHHHHHhCCCCChhHHhHH
Q 003584 419 EEALKYFSDMRISGICPDH--VVVSSILSACAELTV--LEFGQQVHAVFLKSGGCSSLSVDNSL 478 (809)
Q Consensus 419 ~~A~~~~~~m~~~g~~p~~--~t~~~ll~a~~~~~~--~~~a~~~~~~~~~~g~~~~~~~~~~l 478 (809)
+++..+|+.+.+.|+..+. ...+.+|..+..... ...+..++..+.+.|++.....|..+
T Consensus 160 ~~~E~~Y~~L~~~~f~kgn~LQ~LS~iLaL~~~~~~~~v~r~~~l~~~l~~~~~kik~~~yp~l 223 (297)
T PF13170_consen 160 ERMEQCYQKLADAGFKKGNDLQFLSHILALSEGDDQEKVARVIELYNALKKNGVKIKYMHYPTL 223 (297)
T ss_pred HHHHHHHHHHHHhCCCCCcHHHHHHHHHHhccccchHHHHHHHHHHHHHHHcCCccccccccHH
Confidence 4566677777776665532 233333333322222 33555666666666666655555443
No 302
>PF08631 SPO22: Meiosis protein SPO22/ZIP4 like; InterPro: IPR013940 SPO22 is a meiosis-specific protein with similarity to phospholipase A2, involved in completion of nuclear divisions during meiosis; induced early in meiosis []. It is also involved in sporulation [].
Probab=83.05 E-value=57 Score=33.13 Aligned_cols=19 Identities=0% Similarity=-0.274 Sum_probs=12.4
Q ss_pred HHHHhcCChhHHHHHHHHH
Q 003584 614 SACRVHGDLELGERAANNL 632 (809)
Q Consensus 614 ~a~~~~g~~~~A~~~~~~~ 632 (809)
..+.+.++++.|...|+-.
T Consensus 254 ~~~~~~k~y~~A~~w~~~a 272 (278)
T PF08631_consen 254 KKHYKAKNYDEAIEWYELA 272 (278)
T ss_pred HHHHhhcCHHHHHHHHHHH
Confidence 4456667777777777643
No 303
>KOG1464 consensus COP9 signalosome, subunit CSN2 [Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=82.98 E-value=48 Score=32.52 Aligned_cols=231 Identities=19% Similarity=0.248 Sum_probs=129.2
Q ss_pred cCCHHHHHHHHhhcCC----C---CHhHHHHHHHHHHhcCCHHHHHHHHHHHhh---cCC--ccCHhHHHHHHHHHhccc
Q 003584 384 QGNLDCAFMVFNLMQD----K---DVISWTSLITGCAYHGSYEEALKYFSDMRI---SGI--CPDHVVVSSILSACAELT 451 (809)
Q Consensus 384 ~g~~~~A~~~f~~~~~----~---~~~~~~~li~~~~~~g~~~~A~~~~~~m~~---~g~--~p~~~t~~~ll~a~~~~~ 451 (809)
...+++|+.-|+.+.+ + .--+.-.+|..+.+.|++++.++.+.+|.. ..+ .-+..+.++++.-.+...
T Consensus 40 e~~p~~Al~sF~kVlelEgEKgeWGFKALKQmiKI~f~l~~~~eMm~~Y~qlLTYIkSAVTrNySEKsIN~IlDyiStS~ 119 (440)
T KOG1464|consen 40 EDEPKEALSSFQKVLELEGEKGEWGFKALKQMIKINFRLGNYKEMMERYKQLLTYIKSAVTRNYSEKSINSILDYISTSK 119 (440)
T ss_pred ccCHHHHHHHHHHHHhcccccchhHHHHHHHHHHHHhccccHHHHHHHHHHHHHHHHHHHhccccHHHHHHHHHHHhhhh
Confidence 3467777777776643 1 223445678888888888888888888753 111 123556677777666555
Q ss_pred chhHHHHHHHHHHHh-----CCCCChhHHhHHHHHHHhcCCHHHHHHHHHhcCC--------CCe-------eechHHHH
Q 003584 452 VLEFGQQVHAVFLKS-----GGCSSLSVDNSLVLVYAKCGCINDANRVFDSMHT--------RDV-------ITWTALIM 511 (809)
Q Consensus 452 ~~~~a~~~~~~~~~~-----g~~~~~~~~~~li~~y~k~g~~~~A~~~~~~~~~--------~~~-------~~~~~li~ 511 (809)
+.+.-...++.-++. +-..-..+-+.|...|...|.+..-.+++.++.. .|. ..|..=|.
T Consensus 120 ~m~LLQ~FYeTTL~ALkdAKNeRLWFKTNtKLgkl~fd~~e~~kl~KIlkqLh~SCq~edGedD~kKGtQLLEiYAlEIQ 199 (440)
T KOG1464|consen 120 NMDLLQEFYETTLDALKDAKNERLWFKTNTKLGKLYFDRGEYTKLQKILKQLHQSCQTEDGEDDQKKGTQLLEIYALEIQ 199 (440)
T ss_pred hhHHHHHHHHHHHHHHHhhhcceeeeeccchHhhhheeHHHHHHHHHHHHHHHHHhccccCchhhhccchhhhhHhhHhh
Confidence 555555555433221 1122233345567777777887777777776641 111 24555566
Q ss_pred HHHhcCChHHHHHHHHHHHHCC-CCCCHHHHHHHHHHH-----HccCCHHHHHHHHHHhHHhhCCC--CCh---HHHHHH
Q 003584 512 GCAQNGKGKEALQFYDQMLARG-TKPDYITFVGLLFAC-----SHAGLAENARWYFESMDKVYGIK--PGP---DHYACM 580 (809)
Q Consensus 512 ~~~~~g~~~~A~~l~~~m~~~g-~~pd~~t~~~ll~a~-----~~~g~~~~a~~~~~~m~~~~~~~--p~~---~~~~~l 580 (809)
.|....+-..-..++++.+.-. --|.+. ...++.-| .+.|.+++|..-|-+.-+.|.-. |.. --|-.|
T Consensus 200 mYT~qKnNKkLK~lYeqalhiKSAIPHPl-ImGvIRECGGKMHlreg~fe~AhTDFFEAFKNYDEsGspRRttCLKYLVL 278 (440)
T KOG1464|consen 200 MYTEQKNNKKLKALYEQALHIKSAIPHPL-IMGVIRECGGKMHLREGEFEKAHTDFFEAFKNYDESGSPRRTTCLKYLVL 278 (440)
T ss_pred hhhhhcccHHHHHHHHHHHHhhccCCchH-HHhHHHHcCCccccccchHHHHHhHHHHHHhcccccCCcchhHHHHHHHH
Confidence 6777777777777787766422 123332 33445544 35677887765443333333222 221 235566
Q ss_pred HHHHhhcCC----HHHHHHHHHhCcCCCCHHHHHHHHHHHHhc
Q 003584 581 IDLLGRSGK----LIEAKALLDQMVGEPDATVWKALLSACRVH 619 (809)
Q Consensus 581 i~~~~~~g~----~~eA~~~~~~m~~~p~~~~~~~ll~a~~~~ 619 (809)
.+++.+.|- -+||.-+ ...|.......|+.+|..+
T Consensus 279 ANMLmkS~iNPFDsQEAKPy----KNdPEIlAMTnlv~aYQ~N 317 (440)
T KOG1464|consen 279 ANMLMKSGINPFDSQEAKPY----KNDPEILAMTNLVAAYQNN 317 (440)
T ss_pred HHHHHHcCCCCCcccccCCC----CCCHHHHHHHHHHHHHhcc
Confidence 677777662 1121110 0135556777888888654
No 304
>KOG1586 consensus Protein required for fusion of vesicles in vesicular transport, alpha-SNAP [Intracellular trafficking, secretion, and vesicular transport]
Probab=82.68 E-value=36 Score=32.81 Aligned_cols=17 Identities=6% Similarity=0.321 Sum_probs=11.1
Q ss_pred HHhcCCHHHHHHHHHhc
Q 003584 482 YAKCGCINDANRVFDSM 498 (809)
Q Consensus 482 y~k~g~~~~A~~~~~~~ 498 (809)
++-.+++++|.++|.+.
T Consensus 24 fgg~~k~eeAadl~~~A 40 (288)
T KOG1586|consen 24 FGGSNKYEEAAELYERA 40 (288)
T ss_pred cCCCcchHHHHHHHHHH
Confidence 44455777777777655
No 305
>PF14853 Fis1_TPR_C: Fis1 C-terminal tetratricopeptide repeat; PDB: 1IYG_A 1PC2_A 1NZN_A 3UUX_C 1Y8M_A 2PQR_A 2PQN_A 3O48_A.
Probab=82.63 E-value=3.7 Score=29.28 Aligned_cols=32 Identities=28% Similarity=0.338 Sum_probs=25.7
Q ss_pred HHHHHHHhcCChhHHHHHHHHHhccCCCCCcc
Q 003584 611 ALLSACRVHGDLELGERAANNLFELEPMNAMP 642 (809)
Q Consensus 611 ~ll~a~~~~g~~~~A~~~~~~~~~~~p~~~~~ 642 (809)
.+.-++.+.|+++.|.+..+.+++.+|+|..+
T Consensus 6 ~lAig~ykl~~Y~~A~~~~~~lL~~eP~N~Qa 37 (53)
T PF14853_consen 6 YLAIGHYKLGEYEKARRYCDALLEIEPDNRQA 37 (53)
T ss_dssp HHHHHHHHTT-HHHHHHHHHHHHHHTTS-HHH
T ss_pred HHHHHHHHhhhHHHHHHHHHHHHhhCCCcHHH
Confidence 35668899999999999999999999987643
No 306
>KOG2066 consensus Vacuolar assembly/sorting protein VPS41 [Intracellular trafficking, secretion, and vesicular transport]
Probab=82.52 E-value=97 Score=35.46 Aligned_cols=28 Identities=18% Similarity=0.253 Sum_probs=21.7
Q ss_pred hHHHHHHHhcCCHHHHHHHHHhcCCCCe
Q 003584 476 NSLVLVYAKCGCINDANRVFDSMHTRDV 503 (809)
Q Consensus 476 ~~li~~y~k~g~~~~A~~~~~~~~~~~~ 503 (809)
..|+..|...+++..|..++-...++++
T Consensus 509 e~La~LYl~d~~Y~~Al~~ylklk~~~v 536 (846)
T KOG2066|consen 509 EVLAHLYLYDNKYEKALPIYLKLQDKDV 536 (846)
T ss_pred HHHHHHHHHccChHHHHHHHHhccChHH
Confidence 4478888888888888888877776654
No 307
>COG4649 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=82.50 E-value=19 Score=32.85 Aligned_cols=49 Identities=18% Similarity=0.142 Sum_probs=23.7
Q ss_pred CCChHHHHHHHhccCCCCeeeHHHHH-----HHHHhcCChhHHHHHHHHHHHCC
Q 003584 283 CGDLDSARRLLEYSEIDNEVSWNSMI-----VGFARQGFHKEALSLFKKMHARD 331 (809)
Q Consensus 283 ~g~~~~A~~~f~~~~~~~~~~~~~li-----~~~~~~g~~~~A~~~~~~m~~~g 331 (809)
.+..++|..-|..+...+--+|-.|. ....+.|+..+|...|++.-...
T Consensus 71 ~~k~d~Alaaf~~lektg~g~YpvLA~mr~at~~a~kgdta~AV~aFdeia~dt 124 (221)
T COG4649 71 ENKTDDALAAFTDLEKTGYGSYPVLARMRAATLLAQKGDTAAAVAAFDEIAADT 124 (221)
T ss_pred cCCchHHHHHHHHHHhcCCCcchHHHHHHHHHHHhhcccHHHHHHHHHHHhccC
Confidence 34445555555544444444443332 23345566666666666655443
No 308
>PF10602 RPN7: 26S proteasome subunit RPN7; InterPro: IPR019585 This entry represents the regulatory subunit RPN7 (known as the non-ATPase regulatory subunit 6 in higher eukaryotes) of the 26S proteasome. This entry also matches the evolutionarily related subunit 1 of the COP9 signalosome complex (CSN) from Arabidopsis []. The 26S proteasome plays a major role in ATP-dependent degradation of ubiquitinated proteins. Substrate specificity is conferred by the regulatory particle (RP), which can dissociate into stable lid and base subcomplexes. The regulatory subunit RPN7 is one of the lid subunits of the 26S proteasome and has been shown in Saccharomyces cerevisiae (Baker's yeast) to be required for structural integrity []. The COP9 signalosome is a conserved protein complex composed of eight subunits, where Individual subunits of the complex have been linked to various signal transduction pathways leading to gene expression and cell cycle control []. The overall organisation and the amino acid sequences of the COP9 signalosome subunits resemble the lid subcomplex of the 19 S regulatory particle for the 26 S proteasome []. COP9 subunit 1 (CSN1 or GPS1) of the COP9 complex is an essential subunit of the complex with regard to both structural integrity and functionality. The N-terminal region of subunit 1 (CSN1-N) can inhibit c-fos expression from either a transfected template or a chromosomal transgene (fos-lacZ), and may contain the activity domain that confers most of the repression functions of CSN1. The C-terminal region of subunit 1 (CSN1-C) allows integration of the protein into the COP9 signalosome.
Probab=82.44 E-value=8.2 Score=36.03 Aligned_cols=60 Identities=20% Similarity=0.150 Sum_probs=32.2
Q ss_pred hHHHHHHHHHcCCCchhHHHHHHHHHHcCCCCCcc--cHHHHHHHhhcCCCchHHHHHHHHH
Q 003584 100 TWSSLIYGYSNYGLDIEAFELFWQMQLEGYRPSQY--TLDNVLRLCSLKGLLQRGEQFHGYA 159 (809)
Q Consensus 100 ~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~--t~~~ll~~~~~~~~~~~a~~~~~~~ 159 (809)
.|..+..-|++.|+.++|++.|.++++....|... .+..+|+.+...+++..+......+
T Consensus 38 ~~~~l~~~~~~~Gd~~~A~k~y~~~~~~~~~~~~~id~~l~~irv~i~~~d~~~v~~~i~ka 99 (177)
T PF10602_consen 38 ALEDLADHYCKIGDLEEALKAYSRARDYCTSPGHKIDMCLNVIRVAIFFGDWSHVEKYIEKA 99 (177)
T ss_pred HHHHHHHHHHHhhhHHHHHHHHHHHhhhcCCHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHH
Confidence 45555566666666666666666666544333322 2444555555555555555544443
No 309
>PF07035 Mic1: Colon cancer-associated protein Mic1-like; InterPro: IPR009755 This entry represents the C terminus (approximately 160 residues) of a number of proteins that resemble colon cancer-associated protein Mic1.
Probab=82.35 E-value=40 Score=30.92 Aligned_cols=39 Identities=18% Similarity=0.308 Sum_probs=26.0
Q ss_pred HHHHHHHhCCCCchhHHHHHHHHHHhCCChHHHHHHHhc
Q 003584 257 VHGCILSSGFEANVYVQSALIDMYAKCGDLDSARRLLEY 295 (809)
Q Consensus 257 ~~~~~~~~g~~~~~~~~~~Li~~y~~~g~~~~A~~~f~~ 295 (809)
....+.+.+++|+...+..+++.+.+.|++.....++..
T Consensus 16 YirSl~~~~i~~~~~L~~lli~lLi~~~~~~~L~qllq~ 54 (167)
T PF07035_consen 16 YIRSLNQHNIPVQHELYELLIDLLIRNGQFSQLHQLLQY 54 (167)
T ss_pred HHHHHHHcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHhh
Confidence 344455667777777777777777777776665555543
No 310
>PF00515 TPR_1: Tetratricopeptide repeat; InterPro: IPR001440 The tetratrico peptide repeat (TPR) is a structural motif present in a wide range of proteins [, , ]. It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. The X-ray structure of a domain containing three TPRs from protein phosphatase 5 revealed that TPR adopts a helix-turn-helix arrangement, with adjacent TPR motifs packing in a parallel fashion, resulting in a spiral of repeating anti-parallel alpha-helices []. The two helices are denoted helix A and helix B. The packing angle between helix A and helix B is ~24 degrees; within a single TPR and generates a right-handed superhelical shape. Helix A interacts with helix B and with helix A' of the next TPR. Two protein surfaces are generated: the inner concave surface is contributed to mainly by residue on helices A, and the other surface presents residues from both helices A and B. ; GO: 0005515 protein binding; PDB: 3SF4_C 2LNI_A 1ELW_A 2C0M_A 1FCH_B 3R9A_B 2J9Q_A 2C0L_A 1KT1_A 3FWV_A ....
Probab=82.22 E-value=1.9 Score=27.16 Aligned_cols=27 Identities=30% Similarity=0.394 Sum_probs=19.4
Q ss_pred echHHHHHHHhcCChHHHHHHHHHHHH
Q 003584 505 TWTALIMGCAQNGKGKEALQFYDQMLA 531 (809)
Q Consensus 505 ~~~~li~~~~~~g~~~~A~~l~~~m~~ 531 (809)
+|..+...|...|++++|+..|++.++
T Consensus 3 ~~~~~g~~~~~~~~~~~A~~~~~~al~ 29 (34)
T PF00515_consen 3 AYYNLGNAYFQLGDYEEALEYYQRALE 29 (34)
T ss_dssp HHHHHHHHHHHTT-HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhCCchHHHHHHHHHHH
Confidence 466677777777788888887777776
No 311
>KOG0890 consensus Protein kinase of the PI-3 kinase family involved in mitotic growth, DNA repair and meiotic recombination [Signal transduction mechanisms; Chromatin structure and dynamics; Replication, recombination and repair; Cell cycle control, cell division, chromosome partitioning]
Probab=81.89 E-value=1.8e+02 Score=38.13 Aligned_cols=307 Identities=14% Similarity=0.074 Sum_probs=156.1
Q ss_pred HhhcCCChHHHHHHHHHHHHhcc--CCchHHHHHHHHHHHhcCCHHHHHHHHhh-cCCCCHhHHHHHHHHHHhcCCHHHH
Q 003584 345 CFASNIDLNNAKSVHSLIVKTGF--EGYKFVNNALIDMYAKQGNLDCAFMVFNL-MQDKDVISWTSLITGCAYHGSYEEA 421 (809)
Q Consensus 345 ~~~~~~~~~~a~~i~~~~~~~g~--~~~~~~~~~li~~y~~~g~~~~A~~~f~~-~~~~~~~~~~~li~~~~~~g~~~~A 421 (809)
+--+.+.+.+|...++.-..... ......+-.+...|+..+++|....+... ..++++ ..-|.-....|++..|
T Consensus 1392 aSfrc~~y~RalmylEs~~~~ek~~~~~e~l~fllq~lY~~i~dpDgV~Gv~~~r~a~~sl---~~qil~~e~~g~~~da 1468 (2382)
T KOG0890|consen 1392 ASFRCKAYARALMYLESHRSTEKEKETEEALYFLLQNLYGSIHDPDGVEGVSARRFADPSL---YQQILEHEASGNWADA 1468 (2382)
T ss_pred HHHhhHHHHHHHHHHHHhccccchhHHHHHHHHHHHHHHHhcCCcchhhhHHHHhhcCccH---HHHHHHHHhhccHHHH
Confidence 44445555555555554200000 11122334444467777777766666552 333332 2234445667888888
Q ss_pred HHHHHHHhhcCCccC-HhHHHHHHHHHhcccchhHHHHHHHHHHHhCCCCChhHHhH-HHHHHHhcCCHHHHHHHHHhcC
Q 003584 422 LKYFSDMRISGICPD-HVVVSSILSACAELTVLEFGQQVHAVFLKSGGCSSLSVDNS-LVLVYAKCGCINDANRVFDSMH 499 (809)
Q Consensus 422 ~~~~~~m~~~g~~p~-~~t~~~ll~a~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~-li~~y~k~g~~~~A~~~~~~~~ 499 (809)
...|+.+.+.+ |+ ..+++.++..-...+.++......+...... .+...-+++ =+.+--+.++++.......
T Consensus 1469 ~~Cye~~~q~~--p~~~~~~~g~l~sml~~~~l~t~i~~~dg~~~~~-se~~~~~~s~~~eaaW~l~qwD~~e~~l~--- 1542 (2382)
T KOG0890|consen 1469 AACYERLIQKD--PDKEKHHSGVLKSMLAIQHLSTEILHLDGLIINR-SEEVDELNSLGVEAAWRLSQWDLLESYLS--- 1542 (2382)
T ss_pred HHHHHHhhcCC--CccccchhhHHHhhhcccchhHHHhhhcchhhcc-CHHHHHHHHHHHHHHhhhcchhhhhhhhh---
Confidence 88888887653 44 5566666666555566555554333322221 222222222 2344456677776666555
Q ss_pred CCCeeechHH-H-HHHHhcC--ChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCCHHHHHHHHH----------HhH
Q 003584 500 TRDVITWTAL-I-MGCAQNG--KGKEALQFYDQMLARGTKPDYITFVGLLFACSHAGLAENARWYFE----------SMD 565 (809)
Q Consensus 500 ~~~~~~~~~l-i-~~~~~~g--~~~~A~~l~~~m~~~g~~pd~~t~~~ll~a~~~~g~~~~a~~~~~----------~m~ 565 (809)
..+..+|.+. + ..+.+.. +.-.-.++.+.+.+.-+.| +.+|+..|.+..+.++.- ...
T Consensus 1543 ~~n~e~w~~~~~g~~ll~~~~kD~~~~~~~i~~~r~~~i~~--------lsa~s~~~Sy~~~Y~~~~kLH~l~el~~~~~ 1614 (2382)
T KOG0890|consen 1543 DRNIEYWSVESIGKLLLRNKKKDEIATLDLIENSRELVIEN--------LSACSIEGSYVRSYEILMKLHLLLELENSIE 1614 (2382)
T ss_pred cccccchhHHHHHHHHHhhcccchhhHHHHHHHHHHHhhhh--------HHHhhccchHHHHHHHHHHHHHHHHHHHHHH
Confidence 5566677665 2 2222221 1111112333333221111 223333333222222211 111
Q ss_pred HhhCCCCCh------HHHHHHHHHHhhcCCHHHHHHHHHhCc----CC-----CCHHHHHHHHHHHHhcCChhHHHHHHH
Q 003584 566 KVYGIKPGP------DHYACMIDLLGRSGKLIEAKALLDQMV----GE-----PDATVWKALLSACRVHGDLELGERAAN 630 (809)
Q Consensus 566 ~~~~~~p~~------~~~~~li~~~~~~g~~~eA~~~~~~m~----~~-----p~~~~~~~ll~a~~~~g~~~~A~~~~~ 630 (809)
...+..++. ..|..-...-....+..|-.--+++.. .+ .-..+|-.....++..|.++.|-.+.-
T Consensus 1615 ~l~~~s~~~~s~~~sd~W~~Rl~~tq~s~~~~epILa~RRs~l~~~~~~~~~~~~ge~wLqsAriaR~aG~~q~A~nall 1694 (2382)
T KOG0890|consen 1615 ELKKVSYDEDSANNSDNWKNRLERTQPSFRIKEPILAFRRSMLDLRMRSNLKSRLGECWLQSARIARLAGHLQRAQNALL 1694 (2382)
T ss_pred HhhccCccccccccchhHHHHHHHhchhHHHHhHHHHHHHHHHHHhccccccchhHHHHHHHHHHHHhcccHHHHHHHHH
Confidence 112333322 122211111111112222222222111 12 234589999999999999999998888
Q ss_pred HHhccCCCCCccHHhHhhhhhhcCChhHHHHHHHHHHhCC
Q 003584 631 NLFELEPMNAMPYVQLSNMYSTAGKWEDAARVRKLMKSRG 670 (809)
Q Consensus 631 ~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~ 670 (809)
++.+..+ +..+.-.+......|+-..|..+++.-.+..
T Consensus 1695 ~A~e~r~--~~i~~E~AK~lW~~gd~~~Al~~Lq~~l~~~ 1732 (2382)
T KOG0890|consen 1695 NAKESRL--PEIVLERAKLLWQTGDELNALSVLQEILSKN 1732 (2382)
T ss_pred hhhhccc--chHHHHHHHHHHhhccHHHHHHHHHHHHHhh
Confidence 8777764 6788999999999999999999999887653
No 312
>COG1747 Uncharacterized N-terminal domain of the transcription elongation factor GreA [Function unknown]
Probab=81.19 E-value=86 Score=33.97 Aligned_cols=92 Identities=12% Similarity=0.030 Sum_probs=61.9
Q ss_pred hHHHHHHHHHHhcCCHHHHHHHHHHHhhcCCccCHhHHHHHHHHHhcccchhHHHHHHHHHHHhCCCCChhHHhHHHHHH
Q 003584 403 ISWTSLITGCAYHGSYEEALKYFSDMRISGICPDHVVVSSILSACAELTVLEFGQQVHAVFLKSGGCSSLSVDNSLVLVY 482 (809)
Q Consensus 403 ~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~y 482 (809)
...-+++..+.++..+.-...+..+|..-| -+...|..++..|... ..+.--.++..+.+..+ .|+....-|++.|
T Consensus 67 ~~l~~~~~~f~~n~k~~~veh~c~~~l~~~--e~kmal~el~q~y~en-~n~~l~~lWer~ve~df-nDvv~~ReLa~~y 142 (711)
T COG1747 67 SCLVTLLTIFGDNHKNQIVEHLCTRVLEYG--ESKMALLELLQCYKEN-GNEQLYSLWERLVEYDF-NDVVIGRELADKY 142 (711)
T ss_pred hHHHHHHHHhccchHHHHHHHHHHHHHHhc--chHHHHHHHHHHHHhc-CchhhHHHHHHHHHhcc-hhHHHHHHHHHHH
Confidence 344566777777777777777777877654 4566677777777666 45556666776666654 3455556677777
Q ss_pred HhcCCHHHHHHHHHhcC
Q 003584 483 AKCGCINDANRVFDSMH 499 (809)
Q Consensus 483 ~k~g~~~~A~~~~~~~~ 499 (809)
.+ ++.+.+...|.++.
T Consensus 143 Ek-ik~sk~a~~f~Ka~ 158 (711)
T COG1747 143 EK-IKKSKAAEFFGKAL 158 (711)
T ss_pred HH-hchhhHHHHHHHHH
Confidence 76 77777777777654
No 313
>PF10345 Cohesin_load: Cohesin loading factor; InterPro: IPR019440 Cohesin loading factor is a conserved protein that has been characterised in fungi. It is associated with the cohesin complex and is required in G1 for cohesin binding to chromosomes, but is dispensable in G2 when cohesion has been established. It is often referred to as Ssl3 in Schizosaccharomyces pombe (Fission yeast), and Scc4 in Saccharomyces cerevisiae (Baker's yeast). It complexes with Mis4 [].
Probab=81.14 E-value=1.1e+02 Score=35.21 Aligned_cols=50 Identities=18% Similarity=0.326 Sum_probs=27.8
Q ss_pred hcCChhHHHHHHHHHhccC---CCCCc-cH-----HhHhhhhhhcCChhHHHHHHHHHH
Q 003584 618 VHGDLELGERAANNLFELE---PMNAM-PY-----VQLSNMYSTAGKWEDAARVRKLMK 667 (809)
Q Consensus 618 ~~g~~~~A~~~~~~~~~~~---p~~~~-~~-----~~l~~~~~~~g~~~~A~~~~~~m~ 667 (809)
-.|+..+..........+- |+... .+ ..+.+.|...|+.++|.....+..
T Consensus 546 f~~~~~e~~~~s~~a~~~A~k~~d~~~~LW~~v~~~~l~~~~~~~G~~~ka~~~~~~~~ 604 (608)
T PF10345_consen 546 FEGDVGEQAKKSARAFQLAKKSSDYSDQLWHLVASGMLADSYEVQGDRDKAEEARQQLD 604 (608)
T ss_pred HcCCHHHHHHHHHHHHHHHHhhhhhhhHHHHHHHHHHHHHHHHHcCcHHHHHHHHHHHH
Confidence 3677666555544444322 32222 22 244555777888888887776653
No 314
>KOG0276 consensus Vesicle coat complex COPI, beta' subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=80.61 E-value=18 Score=39.61 Aligned_cols=148 Identities=16% Similarity=0.020 Sum_probs=97.3
Q ss_pred hcCCHHHHHHHHHhcCCCCeeechHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHH-HHHHHHHHHHccCCHHHHHHHHH
Q 003584 484 KCGCINDANRVFDSMHTRDVITWTALIMGCAQNGKGKEALQFYDQMLARGTKPDYI-TFVGLLFACSHAGLAENARWYFE 562 (809)
Q Consensus 484 k~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~pd~~-t~~~ll~a~~~~g~~~~a~~~~~ 562 (809)
-.|+++.|..++..++++ .-+.++.-+...|..++|+++ .||.. -|.. ..+.|+++.|.++..
T Consensus 598 mrrd~~~a~~vLp~I~k~---~rt~va~Fle~~g~~e~AL~~---------s~D~d~rFel----al~lgrl~iA~~la~ 661 (794)
T KOG0276|consen 598 LRRDLEVADGVLPTIPKE---IRTKVAHFLESQGMKEQALEL---------STDPDQRFEL----ALKLGRLDIAFDLAV 661 (794)
T ss_pred hhccccccccccccCchh---hhhhHHhHhhhccchHhhhhc---------CCChhhhhhh----hhhcCcHHHHHHHHH
Confidence 357777777777666632 234556666777777777764 34433 2322 246788888888765
Q ss_pred HhHHhhCCCCChHHHHHHHHHHhhcCCHHHHHHHHHhCcCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHhccCCCCCcc
Q 003584 563 SMDKVYGIKPGPDHYACMIDLLGRSGKLIEAKALLDQMVGEPDATVWKALLSACRVHGDLELGERAANNLFELEPMNAMP 642 (809)
Q Consensus 563 ~m~~~~~~~p~~~~~~~li~~~~~~g~~~eA~~~~~~m~~~p~~~~~~~ll~a~~~~g~~~~A~~~~~~~~~~~p~~~~~ 642 (809)
+.. +..-|..|.++...+|++..|.+.|.+.. -|.+|+-.+...|+.+.-..+.....+....|
T Consensus 662 e~~-------s~~Kw~~Lg~~al~~~~l~lA~EC~~~a~------d~~~LlLl~t~~g~~~~l~~la~~~~~~g~~N--- 725 (794)
T KOG0276|consen 662 EAN-------SEVKWRQLGDAALSAGELPLASECFLRAR------DLGSLLLLYTSSGNAEGLAVLASLAKKQGKNN--- 725 (794)
T ss_pred hhc-------chHHHHHHHHHHhhcccchhHHHHHHhhc------chhhhhhhhhhcCChhHHHHHHHHHHhhcccc---
Confidence 432 44568889999999999999999887754 36677777777787765545544444443333
Q ss_pred HHhHhhhhhhcCChhHHHHHHHH
Q 003584 643 YVQLSNMYSTAGKWEDAARVRKL 665 (809)
Q Consensus 643 ~~~l~~~~~~~g~~~~A~~~~~~ 665 (809)
.--.+|...|+++++.+++.+
T Consensus 726 --~AF~~~~l~g~~~~C~~lLi~ 746 (794)
T KOG0276|consen 726 --LAFLAYFLSGDYEECLELLIS 746 (794)
T ss_pred --hHHHHHHHcCCHHHHHHHHHh
Confidence 233467788999999887754
No 315
>COG4649 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=80.55 E-value=46 Score=30.45 Aligned_cols=119 Identities=17% Similarity=0.152 Sum_probs=57.5
Q ss_pred HHhcCChHHHHHHHHHHHHCCCCCCHH-HHHHHHHHHHccCCHHHHHHHHHHhHHhhCCCCChH-HHHHH--HHHHhhcC
Q 003584 513 CAQNGKGKEALQFYDQMLARGTKPDYI-TFVGLLFACSHAGLAENARWYFESMDKVYGIKPGPD-HYACM--IDLLGRSG 588 (809)
Q Consensus 513 ~~~~g~~~~A~~l~~~m~~~g~~pd~~-t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~~~-~~~~l--i~~~~~~g 588 (809)
+++.+..++|+.-|..+.+.|...=.+ ..........+.|+...|...|+++-.. .-.|... -..-| .-++...|
T Consensus 68 lA~~~k~d~Alaaf~~lektg~g~YpvLA~mr~at~~a~kgdta~AV~aFdeia~d-t~~P~~~rd~ARlraa~lLvD~g 146 (221)
T COG4649 68 LAQENKTDDALAAFTDLEKTGYGSYPVLARMRAATLLAQKGDTAAAVAAFDEIAAD-TSIPQIGRDLARLRAAYLLVDNG 146 (221)
T ss_pred HHHcCCchHHHHHHHHHHhcCCCcchHHHHHHHHHHHhhcccHHHHHHHHHHHhcc-CCCcchhhHHHHHHHHHHHhccc
Confidence 456677788888888887766443222 2223334456667777777777766544 2222221 11111 11234455
Q ss_pred CHHHHHHHHHhCcCCCCH---HHHHHHHHHHHhcCChhHHHHHHHHH
Q 003584 589 KLIEAKALLDQMVGEPDA---TVWKALLSACRVHGDLELGERAANNL 632 (809)
Q Consensus 589 ~~~eA~~~~~~m~~~p~~---~~~~~ll~a~~~~g~~~~A~~~~~~~ 632 (809)
.+++.....+-+..+.++ ..-.+|.-+-.+.|++..|...|+++
T Consensus 147 sy~dV~srvepLa~d~n~mR~sArEALglAa~kagd~a~A~~~F~qi 193 (221)
T COG4649 147 SYDDVSSRVEPLAGDGNPMRHSAREALGLAAYKAGDFAKAKSWFVQI 193 (221)
T ss_pred cHHHHHHHhhhccCCCChhHHHHHHHHhHHHHhccchHHHHHHHHHH
Confidence 555555444444332221 12333444444444444444444444
No 316
>smart00028 TPR Tetratricopeptide repeats. Repeats present in 4 or more copies in proteins. Contain a minimum of 34 amino acids each and self-associate via a "knobs and holes" mechanism.
Probab=80.38 E-value=3 Score=25.02 Aligned_cols=31 Identities=23% Similarity=0.182 Sum_probs=19.8
Q ss_pred HHHHHHHHHHhcCChhHHHHHHHHHhccCCC
Q 003584 608 VWKALLSACRVHGDLELGERAANNLFELEPM 638 (809)
Q Consensus 608 ~~~~ll~a~~~~g~~~~A~~~~~~~~~~~p~ 638 (809)
.|..+...+...|+.+.|...+++.+++.|+
T Consensus 3 ~~~~~a~~~~~~~~~~~a~~~~~~~~~~~~~ 33 (34)
T smart00028 3 ALYNLGNAYLKLGDYDEALEYYEKALELDPN 33 (34)
T ss_pred HHHHHHHHHHHHhhHHHHHHHHHHHHccCCC
Confidence 4555666666666677777766666666653
No 317
>KOG0890 consensus Protein kinase of the PI-3 kinase family involved in mitotic growth, DNA repair and meiotic recombination [Signal transduction mechanisms; Chromatin structure and dynamics; Replication, recombination and repair; Cell cycle control, cell division, chromosome partitioning]
Probab=80.33 E-value=2e+02 Score=37.71 Aligned_cols=365 Identities=13% Similarity=0.054 Sum_probs=173.0
Q ss_pred HHhccCChHHHHHHHHHHHHhCC--CCchhHHHHHHHHHHhCCChHHHHHHHhc-cCCCCeeeHHHHHHHHHhcCChhHH
Q 003584 244 ACAAVSARDFGAQVHGCILSSGF--EANVYVQSALIDMYAKCGDLDSARRLLEY-SEIDNEVSWNSMIVGFARQGFHKEA 320 (809)
Q Consensus 244 ~~~~~~~~~~a~~~~~~~~~~g~--~~~~~~~~~Li~~y~~~g~~~~A~~~f~~-~~~~~~~~~~~li~~~~~~g~~~~A 320 (809)
+--+.+.+..|...++.-..... ......+-.|...|+.-+++|....+... ...+ +...-|--....|++..|
T Consensus 1392 aSfrc~~y~RalmylEs~~~~ek~~~~~e~l~fllq~lY~~i~dpDgV~Gv~~~r~a~~---sl~~qil~~e~~g~~~da 1468 (2382)
T KOG0890|consen 1392 ASFRCKAYARALMYLESHRSTEKEKETEEALYFLLQNLYGSIHDPDGVEGVSARRFADP---SLYQQILEHEASGNWADA 1468 (2382)
T ss_pred HHHhhHHHHHHHHHHHHhccccchhHHHHHHHHHHHHHHHhcCCcchhhhHHHHhhcCc---cHHHHHHHHHhhccHHHH
Confidence 33445555566655555200000 11223344455578888887776666552 2222 233445556677999999
Q ss_pred HHHHHHHHHCCCCCCcccHHHHHHHhhcCCChHHHHHHHHHHHHhccCCchHHH-HHHHHHHHhcCCHHHHHHHHhhcCC
Q 003584 321 LSLFKKMHARDIKIDDFTYPSVLNCFASNIDLNNAKSVHSLIVKTGFEGYKFVN-NALIDMYAKQGNLDCAFMVFNLMQD 399 (809)
Q Consensus 321 ~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~i~~~~~~~g~~~~~~~~-~~li~~y~~~g~~~~A~~~f~~~~~ 399 (809)
...|+.+.+.+ ++...+++.++......+.++...-..+.....- .+...-+ +.=+.+--+.+++|....... .
T Consensus 1469 ~~Cye~~~q~~-p~~~~~~~g~l~sml~~~~l~t~i~~~dg~~~~~-se~~~~~~s~~~eaaW~l~qwD~~e~~l~---~ 1543 (2382)
T KOG0890|consen 1469 AACYERLIQKD-PDKEKHHSGVLKSMLAIQHLSTEILHLDGLIINR-SEEVDELNSLGVEAAWRLSQWDLLESYLS---D 1543 (2382)
T ss_pred HHHHHHhhcCC-CccccchhhHHHhhhcccchhHHHhhhcchhhcc-CHHHHHHHHHHHHHHhhhcchhhhhhhhh---c
Confidence 99999998764 2236778888888777777776665443333221 2222222 223344456677776666555 4
Q ss_pred CCHhHHHHH-H-HHHHhcCC--HHHHHHHHHHHhhcCCccCHhHHHHHHHHHhcccchhHHHHHHHHHHHhCCCCChhHH
Q 003584 400 KDVISWTSL-I-TGCAYHGS--YEEALKYFSDMRISGICPDHVVVSSILSACAELTVLEFGQQVHAVFLKSGGCSSLSVD 475 (809)
Q Consensus 400 ~~~~~~~~l-i-~~~~~~g~--~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~~~~~~a~~~~~~~~~~g~~~~~~~~ 475 (809)
.+..+|.+. + ..+.+... .-.-.++.+.+++.-+. =+.+|+..+.+. ..|
T Consensus 1544 ~n~e~w~~~~~g~~ll~~~~kD~~~~~~~i~~~r~~~i~--------~lsa~s~~~Sy~------------------~~Y 1597 (2382)
T KOG0890|consen 1544 RNIEYWSVESIGKLLLRNKKKDEIATLDLIENSRELVIE--------NLSACSIEGSYV------------------RSY 1597 (2382)
T ss_pred ccccchhHHHHHHHHHhhcccchhhHHHHHHHHHHHhhh--------hHHHhhccchHH------------------HHH
Confidence 555566554 2 22222111 11111222222221111 122222222111 122
Q ss_pred hHHHHHHHhcCCHHHHHHHHHhcCCCC-----eeechHHHHHHHhcCChHHHHHHHHHHH-HC----CCCCC-HHHHHHH
Q 003584 476 NSLVLVYAKCGCINDANRVFDSMHTRD-----VITWTALIMGCAQNGKGKEALQFYDQML-AR----GTKPD-YITFVGL 544 (809)
Q Consensus 476 ~~li~~y~k~g~~~~A~~~~~~~~~~~-----~~~~~~li~~~~~~g~~~~A~~l~~~m~-~~----g~~pd-~~t~~~l 544 (809)
..++....-+. .+.-.+.+......+ ..-|..-+.-=....+..+-+--+++.. .. +.+-. ..+|...
T Consensus 1598 ~~~~kLH~l~e-l~~~~~~l~~~s~~~~s~~~sd~W~~Rl~~tq~s~~~~epILa~RRs~l~~~~~~~~~~~~ge~wLqs 1676 (2382)
T KOG0890|consen 1598 EILMKLHLLLE-LENSIEELKKVSYDEDSANNSDNWKNRLERTQPSFRIKEPILAFRRSMLDLRMRSNLKSRLGECWLQS 1676 (2382)
T ss_pred HHHHHHHHHHH-HHHHHHHhhccCccccccccchhHHHHHHHhchhHHHHhHHHHHHHHHHHHhccccccchhHHHHHHH
Confidence 22222222221 122222222222111 1123222221111111222222222211 11 12222 2367777
Q ss_pred HHHHHccCCHHHHHHHHHHhHHhhCCCCChHHHHHHHHHHhhcCCHHHHHHHHHhCcC--CCC--------HHHHHHHHH
Q 003584 545 LFACSHAGLAENARWYFESMDKVYGIKPGPDHYACMIDLLGRSGKLIEAKALLDQMVG--EPD--------ATVWKALLS 614 (809)
Q Consensus 545 l~a~~~~g~~~~a~~~~~~m~~~~~~~p~~~~~~~li~~~~~~g~~~eA~~~~~~m~~--~p~--------~~~~~~ll~ 614 (809)
...+...|.++.|....-...+. + .| ..+--.+..+-..|+-..|+.++++... .|+ +..-|.++.
T Consensus 1677 AriaR~aG~~q~A~nall~A~e~-r-~~--~i~~E~AK~lW~~gd~~~Al~~Lq~~l~~~~~~~~~~~~~~p~~~n~~i~ 1752 (2382)
T KOG0890|consen 1677 ARIARLAGHLQRAQNALLNAKES-R-LP--EIVLERAKLLWQTGDELNALSVLQEILSKNFPDLHTPYTDTPQSVNLLIF 1752 (2382)
T ss_pred HHHHHhcccHHHHHHHHHhhhhc-c-cc--hHHHHHHHHHHhhccHHHHHHHHHHHHHhhcccccCCccccchhhhhhhh
Confidence 77788888888888776555432 2 23 3344556777788888888888876552 122 222232222
Q ss_pred H--------H-HhcCC--hhHHHHHHHHHhccCCCCCccHHhHh
Q 003584 615 A--------C-RVHGD--LELGERAANNLFELEPMNAMPYVQLS 647 (809)
Q Consensus 615 a--------~-~~~g~--~~~A~~~~~~~~~~~p~~~~~~~~l~ 647 (809)
. | ...|+ .+.-++.|.++.+..|.....|+.|+
T Consensus 1753 ~~~~L~~~~~~~es~n~~s~~ilk~Y~~~~ail~ewe~~hy~l~ 1796 (2382)
T KOG0890|consen 1753 KKAKLKITKYLEESGNFESKDILKYYHDAKAILPEWEDKHYHLG 1796 (2382)
T ss_pred hhHHHHHHHHHHHhcchhHHHHHHHHHHHHHHcccccCceeeHH
Confidence 2 1 12233 34455677888888886555555555
No 318
>PF13174 TPR_6: Tetratricopeptide repeat; PDB: 3QKY_A 2XEV_A 3URZ_B 2Q7F_A.
Probab=78.56 E-value=2.9 Score=25.89 Aligned_cols=27 Identities=19% Similarity=0.113 Sum_probs=15.3
Q ss_pred HHHHHHhcCChhHHHHHHHHHhccCCC
Q 003584 612 LLSACRVHGDLELGERAANNLFELEPM 638 (809)
Q Consensus 612 ll~a~~~~g~~~~A~~~~~~~~~~~p~ 638 (809)
+..++...|+.++|...++++++..|+
T Consensus 6 ~a~~~~~~g~~~~A~~~~~~~~~~~P~ 32 (33)
T PF13174_consen 6 LARCYYKLGDYDEAIEYFQRLIKRYPD 32 (33)
T ss_dssp HHHHHHHHCHHHHHHHHHHHHHHHSTT
T ss_pred HHHHHHHccCHHHHHHHHHHHHHHCcC
Confidence 444555556666666666666555554
No 319
>PF02259 FAT: FAT domain; InterPro: IPR003151 The FAT domain is a domain present in the PIK-related kinases. Members of the family of PIK-related kinases may act as intracellular sensors that govern radial and horizontal pathways [].; GO: 0005515 protein binding
Probab=78.34 E-value=90 Score=32.78 Aligned_cols=68 Identities=21% Similarity=0.366 Sum_probs=55.9
Q ss_pred CCHHHHHHHHHHHHhcCChhHHHHHHHHHhccCC----CCCccHHhHhhhhhhcCChhHHHHHHHHHHhCCC
Q 003584 604 PDATVWKALLSACRVHGDLELGERAANNLFELEP----MNAMPYVQLSNMYSTAGKWEDAARVRKLMKSRGI 671 (809)
Q Consensus 604 p~~~~~~~ll~a~~~~g~~~~A~~~~~~~~~~~p----~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~ 671 (809)
....+|..+...++++|+++.|...+.++.+.++ ..+.....-+......|+.++|...++...+..+
T Consensus 144 ~~~~~~l~~a~~aRk~g~~~~A~~~l~~~~~~~~~~~~~~~~v~~e~akllw~~g~~~~Ai~~L~~~~~~~~ 215 (352)
T PF02259_consen 144 ELAETWLKFAKLARKAGNFQLALSALNRLFQLNPSSESLLPRVFLEYAKLLWAQGEQEEAIQKLRELLKCRL 215 (352)
T ss_pred HHHHHHHHHHHHHHHCCCcHHHHHHHHHHhccCCcccCCCcchHHHHHHHHHHcCCHHHHHHHHHHHHHHHh
Confidence 3455899999999999999999999999988652 2456666778899999999999999988877433
No 320
>PRK11619 lytic murein transglycosylase; Provisional
Probab=77.59 E-value=1.4e+02 Score=34.42 Aligned_cols=379 Identities=11% Similarity=-0.010 Sum_probs=179.3
Q ss_pred HHHHHhCCChHHHHHHHhccCCCCeeeHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCcccHHHHHHHhhcCCChHHHH
Q 003584 277 IDMYAKCGDLDSARRLLEYSEIDNEVSWNSMIVGFARQGFHKEALSLFKKMHARDIKIDDFTYPSVLNCFASNIDLNNAK 356 (809)
Q Consensus 277 i~~y~~~g~~~~A~~~f~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~ 356 (809)
+..+.+.++.+...+ |..-+..+...-.....+....|+.++|....+.+-..|. ........++..+.+.|.+....
T Consensus 106 l~~La~~~~w~~~~~-~~~~~p~~~~~~c~~~~A~~~~G~~~~A~~~a~~lW~~g~-~~p~~cd~l~~~~~~~g~lt~~d 183 (644)
T PRK11619 106 VNELARREDWRGLLA-FSPEKPKPVEARCNYYYAKWATGQQQEAWQGAKELWLTGK-SLPNACDKLFSVWQQSGKQDPLA 183 (644)
T ss_pred HHHHHHccCHHHHHH-hcCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHhccCC-CCChHHHHHHHHHHHcCCCCHHH
Confidence 344455666666666 3322233444445566666677777667666666654442 24455666666665554433221
Q ss_pred --HHHHHHHHhc-----------cCCc-hHHHHHHHHHHHhcCCHHHHHHHHhhcCCCCHhHHHHHHHHHH--hcCCHHH
Q 003584 357 --SVHSLIVKTG-----------FEGY-KFVNNALIDMYAKQGNLDCAFMVFNLMQDKDVISWTSLITGCA--YHGSYEE 420 (809)
Q Consensus 357 --~i~~~~~~~g-----------~~~~-~~~~~~li~~y~~~g~~~~A~~~f~~~~~~~~~~~~~li~~~~--~~g~~~~ 420 (809)
+=+..+...| +.++ ......++..+.+ ...+...+.... ++...-..++.++. ...+.+.
T Consensus 184 ~w~R~~~al~~~~~~lA~~l~~~l~~~~~~~a~a~~al~~~---p~~~~~~~~~~~-~~~~~~~~~~~~l~Rlar~d~~~ 259 (644)
T PRK11619 184 YLERIRLAMKAGNTGLVTYLAKQLPADYQTIASALIKLQND---PNTVETFARTTG-PTDFTRQMAAVAFASVARQDAEN 259 (644)
T ss_pred HHHHHHHHHHCCCHHHHHHHHHhcChhHHHHHHHHHHHHHC---HHHHHHHhhccC-CChhhHHHHHHHHHHHHHhCHHH
Confidence 1111111111 0111 1122223332222 222222222221 11111111111221 2345677
Q ss_pred HHHHHHHHhhc-CCccCHhH--HHHHHHHHhcccchhHHHHHHHHHHHhCCCCChhHHhHHHHHHHhcCCHHHHHHHHHh
Q 003584 421 ALKYFSDMRIS-GICPDHVV--VSSILSACAELTVLEFGQQVHAVFLKSGGCSSLSVDNSLVLVYAKCGCINDANRVFDS 497 (809)
Q Consensus 421 A~~~~~~m~~~-g~~p~~~t--~~~ll~a~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~y~k~g~~~~A~~~~~~ 497 (809)
|..++...... ++.+.... ...+..........+.+...+....... .+..+...-+....+.++++.+...|..
T Consensus 260 A~~~~~~~~~~~~~~~~~~~~~~~~lA~~~a~~~~~~~a~~w~~~~~~~~--~~~~~~e~r~r~Al~~~dw~~~~~~i~~ 337 (644)
T PRK11619 260 ARLMIPSLVRAQKLNEDQRQELRDIVAWRLMGNDVTDEQAKWRDDVIMRS--QSTSLLERRVRMALGTGDRRGLNTWLAR 337 (644)
T ss_pred HHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHhccCCHHHHHHHHhccccc--CCcHHHHHHHHHHHHccCHHHHHHHHHh
Confidence 88888776443 23222221 1222111112111334444444332221 2344444555555678888888888888
Q ss_pred cCC--CCeeechH-HHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCCHHH-HHHHHHHhHHhhCCCCC
Q 003584 498 MHT--RDVITWTA-LIMGCAQNGKGKEALQFYDQMLARGTKPDYITFVGLLFACSHAGLAEN-ARWYFESMDKVYGIKPG 573 (809)
Q Consensus 498 ~~~--~~~~~~~~-li~~~~~~g~~~~A~~l~~~m~~~g~~pd~~t~~~ll~a~~~~g~~~~-a~~~~~~m~~~~~~~p~ 573 (809)
|+. .+...|.- +..++...|+.++|...|+++.. . .+|-.++.+- +.|..-. .......-.....-.|
T Consensus 338 L~~~~~~~~rw~YW~aRa~~~~g~~~~A~~~~~~~a~---~---~~fYG~LAa~-~Lg~~~~~~~~~~~~~~~~~~~~~- 409 (644)
T PRK11619 338 LPMEAKEKDEWRYWQADLLLEQGRKAEAEEILRQLMQ---Q---RGFYPMVAAQ-RLGEEYPLKIDKAPKPDSALTQGP- 409 (644)
T ss_pred cCHhhccCHhhHHHHHHHHHHcCCHHHHHHHHHHHhc---C---CCcHHHHHHH-HcCCCCCCCCCCCCchhhhhccCh-
Confidence 863 22222222 44555667888888888888743 1 2344444321 1121100 0000000000000001
Q ss_pred hHHHHHHHHHHhhcCCHHHHHHHHHhCcCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHhccC---CCCCccHHhHhhhh
Q 003584 574 PDHYACMIDLLGRSGKLIEAKALLDQMVGEPDATVWKALLSACRVHGDLELGERAANNLFELE---PMNAMPYVQLSNMY 650 (809)
Q Consensus 574 ~~~~~~li~~~~~~g~~~eA~~~~~~m~~~p~~~~~~~ll~a~~~~g~~~~A~~~~~~~~~~~---p~~~~~~~~l~~~~ 650 (809)
-..-+..+...|...+|...+..+....+......+.......|..+.++....+....+ -.-+..|.-....+
T Consensus 410 ---~~~ra~~L~~~g~~~~a~~ew~~~~~~~~~~~~~~la~~A~~~g~~~~ai~~~~~~~~~~~~~~rfp~~~~~~~~~~ 486 (644)
T PRK11619 410 ---EMARVRELMYWNMDNTARSEWANLVASRSKTEQAQLARYAFNQQWWDLSVQATIAGKLWDHLEERFPLAWNDEFRRY 486 (644)
T ss_pred ---HHHHHHHHHHCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCHHHHHHHHhhchhHHHHHHhCCcchHHHHHHH
Confidence 112245567789999999988877766666666777777788899998888776443211 11234566666666
Q ss_pred hhcCChhHHHHHHHHHHhCCCccC
Q 003584 651 STAGKWEDAARVRKLMKSRGIRKE 674 (809)
Q Consensus 651 ~~~g~~~~A~~~~~~m~~~~~~~~ 674 (809)
++.-..+.+.-.---..|.+..+.
T Consensus 487 a~~~~v~~~lv~ai~rqES~f~p~ 510 (644)
T PRK11619 487 TSGKGIPQSYAMAIARQESAWNPK 510 (644)
T ss_pred HHHcCCCHHHHHHHHHHhcCCCCC
Confidence 666666666543333345555443
No 321
>PF07721 TPR_4: Tetratricopeptide repeat; InterPro: IPR011717 This entry includes tetratricopeptide-like repeats not detected by the IPR001440 from INTERPRO, IPR013105 from INTERPRO and IPR011716 from INTERPRO models. The tetratricopeptide repeat (TPR) motif is a protein-protein interaction module found in multiple copies in a number of functionally different proteins that facilitates specific interactions with a partner protein(s) [].; GO: 0042802 identical protein binding
Probab=77.55 E-value=2.3 Score=25.03 Aligned_cols=23 Identities=17% Similarity=0.291 Sum_probs=16.5
Q ss_pred cHHhHhhhhhhcCChhHHHHHHH
Q 003584 642 PYVQLSNMYSTAGKWEDAARVRK 664 (809)
Q Consensus 642 ~~~~l~~~~~~~g~~~~A~~~~~ 664 (809)
....|+.++...|++++|..+++
T Consensus 3 a~~~la~~~~~~G~~~eA~~~l~ 25 (26)
T PF07721_consen 3 ARLALARALLAQGDPDEAERLLR 25 (26)
T ss_pred HHHHHHHHHHHcCCHHHHHHHHh
Confidence 45667777777788877777664
No 322
>PRK12798 chemotaxis protein; Reviewed
Probab=77.32 E-value=1e+02 Score=32.68 Aligned_cols=206 Identities=16% Similarity=0.182 Sum_probs=132.3
Q ss_pred cCCHHHHHHHHHhcCC----CCeeechHHHHHHH-hcCChHHHHHHHHHHHHCCCCCCH----HHHHHHHHHHHccCCHH
Q 003584 485 CGCINDANRVFDSMHT----RDVITWTALIMGCA-QNGKGKEALQFYDQMLARGTKPDY----ITFVGLLFACSHAGLAE 555 (809)
Q Consensus 485 ~g~~~~A~~~~~~~~~----~~~~~~~~li~~~~-~~g~~~~A~~l~~~m~~~g~~pd~----~t~~~ll~a~~~~g~~~ 555 (809)
.|+-++|.+.+..+.. +.+..+-.|+.+-. ...++.+|+++|++..-. -|-. .....-+....+.|+.+
T Consensus 125 ~Gr~~~a~~~La~i~~~~l~~~lg~~laLv~a~l~~~~dP~~Al~~lD~aRLl--aPGTLvEEAALRRsi~la~~~g~~~ 202 (421)
T PRK12798 125 SGRGREARKLLAGVAPEYLPAELGAYLALVQGNLMVATDPATALKLLDQARLL--APGTLVEEAALRRSLFIAAQLGDAD 202 (421)
T ss_pred cCCHHHHHHHhhcCChhhcCchhhhHHHHHHHHHhcccCHHHHHHHHHHHHHh--CCchHHHHHHHHHhhHHHHhcCcHH
Confidence 5889999999988873 34556777776644 456899999999987762 4532 34455556678899999
Q ss_pred HHHHHHHHhHHhhCCCCChHHHH-HHHHHHhh---cCCHHHHHHHHHhCcCCCCHHHHHHHHHHHHhcCChhHHHHHHHH
Q 003584 556 NARWYFESMDKVYGIKPGPDHYA-CMIDLLGR---SGKLIEAKALLDQMVGEPDATVWKALLSACRVHGDLELGERAANN 631 (809)
Q Consensus 556 ~a~~~~~~m~~~~~~~p~~~~~~-~li~~~~~---~g~~~eA~~~~~~m~~~p~~~~~~~ll~a~~~~g~~~~A~~~~~~ 631 (809)
++..+-......|...|=...|. -++..+.+ .-..+.-.+++..|...--..+|..+...-...|+.+.|..+.++
T Consensus 203 rf~~la~~Y~rRF~~S~YA~~F~~~F~~~~~~~~d~~~~~~l~~~ls~~d~~~q~~lYL~iAR~Ali~Gk~~lA~~As~~ 282 (421)
T PRK12798 203 KFEALARNYLRRFRHSPYASQFAQRFVDLVVRLDDEIRDARLVEILSFMDPERQRELYLRIARAALIDGKTELARFASER 282 (421)
T ss_pred HHHHHHHHHHHHhccCchHHHHHHHHHHHHHhccccccHHHHHHHHHhcCchhHHHHHHHHHHHHHHcCcHHHHHHHHHH
Confidence 98888777777776666543332 23333333 334455555666665333345888889999999999999999999
Q ss_pred HhccCCCCCccHHhHhhhhh-----hcCChhHHHHHHHHHHhCCCccCCceeEEEECCEEEEEEeCCCCCcchHHHHHHH
Q 003584 632 LFELEPMNAMPYVQLSNMYS-----TAGKWEDAARVRKLMKSRGIRKEPGCSWVETNSQVHIFISEDRGHPLRTDIYSKI 706 (809)
Q Consensus 632 ~~~~~p~~~~~~~~l~~~~~-----~~g~~~~A~~~~~~m~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~i~~~l 706 (809)
++.+... ...-...+..|. -..+.++|.+.+..+-.. ..+|.-..+....
T Consensus 283 A~~L~~~-~~~~~~ra~LY~aaa~v~s~~~~~al~~L~~I~~~------------------------~L~~~Dr~Ll~AA 337 (421)
T PRK12798 283 ALKLADP-DSADAARARLYRGAALVASDDAESALEELSQIDRD------------------------KLSERDRALLEAA 337 (421)
T ss_pred HHHhccC-CCcchHHHHHHHHHHccCcccHHHHHHHHhcCChh------------------------hCChhhHHHHHHH
Confidence 9888633 333333344443 234466666666544322 2245555555555
Q ss_pred HHHHHHHHHcC
Q 003584 707 DEIMLLIKEAG 717 (809)
Q Consensus 707 ~~l~~~~~~~g 717 (809)
..+-..+.+.+
T Consensus 338 ~~va~~V~~~p 348 (421)
T PRK12798 338 RSVARQVRRAP 348 (421)
T ss_pred HHHHHHHhcCc
Confidence 56666666544
No 323
>PF00637 Clathrin: Region in Clathrin and VPS; InterPro: IPR000547 Proteins synthesized on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. These vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transport []. Clathrin coats contain both clathrin (acts as a scaffold) and adaptor complexes that link clathrin to receptors in coated vesicles. Clathrin-associated protein complexes are believed to interact with the cytoplasmic tails of membrane proteins, leading to their selection and concentration. The two major types of clathrin adaptor complexes are the heterotetrameric adaptor protein (AP) complexes, and the monomeric GGA (Golgi-localising, Gamma-adaptin ear domain homology, ARF-binding proteins) adaptors [, ]. Clathrin is a trimer composed of three heavy chains and three light chains, each monomer projecting outwards like a leg; this three-legged structure is known as a triskelion [, ]. The heavy chains form the legs, their N-terminal beta-propeller regions extending outwards, while their C-terminal alpha-alpha-superhelical regions form the central hub of the triskelion. Peptide motifs can bind between the beta-propeller blades. The light chains appear to have a regulatory role, and may help orient the assembly and disassembly of clathrin coats as they interact with hsc70 uncoating ATPase []. Clathrin triskelia self-polymerise into a curved lattice by twisting individual legs together. The clathrin lattice forms around a vesicle as it buds from the TGN, plasma membrane or endosomes, acting to stabilise the vesicle and facilitate the budding process []. The multiple blades created when the triskelia polymerise are involved in multiple protein interactions, enabling the recruitment of different cargo adaptors and membrane attachment proteins []. This entry represents the 7-fold alpha-alpha-superhelical ARM-type repeat found at the C-terminal of clathrin heavy chains and in VPS (vacuolar protein sorting-associated) proteins. In clathrin heavy chains, the C-terminal 7-fold ARM-type repeats interact to form the central hub of the triskelion. VPS proteins are required for vacuolar assembly and vacuolar traffick, and contain one clathrin-type repeat []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0006886 intracellular protein transport, 0016192 vesicle-mediated transport; PDB: 3LVH_A 3LVG_C 1B89_A 3QIL_L.
Probab=77.02 E-value=3 Score=37.39 Aligned_cols=86 Identities=12% Similarity=0.061 Sum_probs=62.3
Q ss_pred HHHHHhhcCCCchHHHHHHHHHHHhCCCCchHHHHHHHHhhhcCCChhHHHHHhhhCCCCCCcccHHHHHHHHhhCCChH
Q 003584 138 NVLRLCSLKGLLQRGEQFHGYAIKTCFDLNAFVVTGLVDMYAKCKCIFEAEYLFKMFPDGKNHVAWTTMITGYSQNGYGF 217 (809)
Q Consensus 138 ~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~y~~~g~~~~A~~~f~~~~~~~~~~~~~~li~~~~~~g~~~ 217 (809)
.+++.+...+.+.....+++.+++.+...+....+.++..|++.+..+...+.++.... .-...++..+.+.|.++
T Consensus 12 ~vi~~~~~~~~~~~l~~yLe~~~~~~~~~~~~~~~~L~~ly~~~~~~~~l~~~L~~~~~----yd~~~~~~~c~~~~l~~ 87 (143)
T PF00637_consen 12 EVISAFEERNQPEELIEYLEALVKENKENNPDLHTLLLELYIKYDPYEKLLEFLKTSNN----YDLDKALRLCEKHGLYE 87 (143)
T ss_dssp CCHHHCTTTT-GGGCTCCHHHHHHTSTC-SHHHHHHHHHHHHCTTTCCHHHHTTTSSSS----S-CTHHHHHHHTTTSHH
T ss_pred HHHHHHHhCCCHHHHHHHHHHHHhcccccCHHHHHHHHHHHHhcCCchHHHHHcccccc----cCHHHHHHHHHhcchHH
Confidence 34556666666677777777777766667788999999999999888888888884333 44567777788888888
Q ss_pred HHHHHHHHHH
Q 003584 218 KAIECFRDMR 227 (809)
Q Consensus 218 ~A~~l~~~m~ 227 (809)
+|.-++.++.
T Consensus 88 ~a~~Ly~~~~ 97 (143)
T PF00637_consen 88 EAVYLYSKLG 97 (143)
T ss_dssp HHHHHHHCCT
T ss_pred HHHHHHHHcc
Confidence 8888877764
No 324
>KOG4570 consensus Uncharacterized conserved protein [Function unknown]
Probab=76.79 E-value=14 Score=37.06 Aligned_cols=102 Identities=18% Similarity=0.094 Sum_probs=69.8
Q ss_pred hCCCCChhHHhHHHHHHHhcCCHHHHHHHHHhcC-CCCe---eechH-HHHHHHhcCChHHHHHHHHHHHHCCCCCCHHH
Q 003584 466 SGGCSSLSVDNSLVLVYAKCGCINDANRVFDSMH-TRDV---ITWTA-LIMGCAQNGKGKEALQFYDQMLARGTKPDYIT 540 (809)
Q Consensus 466 ~g~~~~~~~~~~li~~y~k~g~~~~A~~~~~~~~-~~~~---~~~~~-li~~~~~~g~~~~A~~l~~~m~~~g~~pd~~t 540 (809)
.|.+....+...++..-....+++++...+-++. .|+. .-|+. .+.-++..=++++++.++..=+..|+-||..|
T Consensus 58 ~g~~~s~~~Vd~~V~v~~~~~~idd~~~~LyKlRhs~~a~~~~~~~~~~~irlllky~pq~~i~~l~npIqYGiF~dqf~ 137 (418)
T KOG4570|consen 58 RGLPVSSLTVDRLVDVISSREEIDDAEYYLYKLRHSPNAWYLRNWTIHTWIRLLLKYDPQKAIYTLVNPIQYGIFPDQFT 137 (418)
T ss_pred cCCCcceeehhhhhhccccccchhHHHHHHHHHhcCcchhhhccccHHHHHHHHHccChHHHHHHHhCcchhccccchhh
Confidence 3555555566667777777778888888887776 2321 11111 11122333467788888888888899999999
Q ss_pred HHHHHHHHHccCCHHHHHHHHHHhHHh
Q 003584 541 FVGLLFACSHAGLAENARWYFESMDKV 567 (809)
Q Consensus 541 ~~~ll~a~~~~g~~~~a~~~~~~m~~~ 567 (809)
+..++..+.+.++..+|.++.-.|...
T Consensus 138 ~c~l~D~flk~~n~~~aa~vvt~~~~q 164 (418)
T KOG4570|consen 138 FCLLMDSFLKKENYKDAASVVTEVMMQ 164 (418)
T ss_pred HHHHHHHHHhcccHHHHHHHHHHHHHH
Confidence 999999999999988888876665543
No 325
>PF07719 TPR_2: Tetratricopeptide repeat; InterPro: IPR013105 The tetratrico peptide repeat (TPR) is a structural motif present in a wide range of proteins [, , ]. It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. This repeat includes outlying Tetratricopeptide-like repeats (TPR) that are not matched by IPR001440 from INTERPRO.; PDB: 1XNF_B 3Q15_A 4ABN_A 1OUV_A 3U4T_A 3MA5_C 2KCV_A 2KCL_A 2XEV_A 3NF1_A ....
Probab=76.75 E-value=3.5 Score=25.73 Aligned_cols=26 Identities=27% Similarity=0.500 Sum_probs=17.2
Q ss_pred chHHHHHHHhcCChHHHHHHHHHHHH
Q 003584 506 WTALIMGCAQNGKGKEALQFYDQMLA 531 (809)
Q Consensus 506 ~~~li~~~~~~g~~~~A~~l~~~m~~ 531 (809)
|..+...|...|++++|++.|++.++
T Consensus 4 ~~~lg~~~~~~~~~~~A~~~~~~al~ 29 (34)
T PF07719_consen 4 WYYLGQAYYQLGNYEEAIEYFEKALE 29 (34)
T ss_dssp HHHHHHHHHHTT-HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhCCHHHHHHHHHHHHH
Confidence 45566667777777777777777666
No 326
>PF06552 TOM20_plant: Plant specific mitochondrial import receptor subunit TOM20; InterPro: IPR010547 This family consists of several plant specific mitochondrial import receptor subunit TOM20 (translocase of outer membrane 20 kDa subunit) proteins. Most mitochondrial proteins are encoded by the nuclear genome, and are synthesised in the cytosol. TOM20 is a general import receptor that binds to mitochondrial pre-sequences in the early step of protein import into the mitochondria [].; GO: 0045040 protein import into mitochondrial outer membrane, 0005742 mitochondrial outer membrane translocase complex; PDB: 1ZU2_A.
Probab=76.51 E-value=13 Score=34.32 Aligned_cols=46 Identities=13% Similarity=0.096 Sum_probs=32.0
Q ss_pred hhHHHHHHHHHhccCCCCCccHHhHhhhhhhcCC----hhHHHHHHHHHH
Q 003584 622 LELGERAANNLFELEPMNAMPYVQLSNMYSTAGK----WEDAARVRKLMK 667 (809)
Q Consensus 622 ~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~----~~~A~~~~~~m~ 667 (809)
+++|+.-+++++.++|+...++.+++++|...|. ..+|..+|++..
T Consensus 51 iedAisK~eeAL~I~P~~hdAlw~lGnA~ts~A~l~~d~~~A~~~F~kA~ 100 (186)
T PF06552_consen 51 IEDAISKFEEALKINPNKHDALWCLGNAYTSLAFLTPDTAEAEEYFEKAT 100 (186)
T ss_dssp HHHHHHHHHHHHHH-TT-HHHHHHHHHHHHHHHHH---HHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhcCCchHHHHHHHHHHHHHHHhhcCChHHHHHHHHHHH
Confidence 4566777888899999999999999999977654 334555555543
No 327
>PRK10941 hypothetical protein; Provisional
Probab=76.51 E-value=13 Score=37.36 Aligned_cols=62 Identities=16% Similarity=0.169 Sum_probs=54.8
Q ss_pred HHHHHHHHHHhcCChhHHHHHHHHHhccCCCCCccHHhHhhhhhhcCChhHHHHHHHHHHhC
Q 003584 608 VWKALLSACRVHGDLELGERAANNLFELEPMNAMPYVQLSNMYSTAGKWEDAARVRKLMKSR 669 (809)
Q Consensus 608 ~~~~ll~a~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~ 669 (809)
..+.|-.+|.+.++++.|+.+.+.++.+.|+++.-+--.+-+|.+.|.+..|..-++...+.
T Consensus 183 ml~nLK~~~~~~~~~~~AL~~~e~ll~l~P~dp~e~RDRGll~~qL~c~~~A~~DL~~fl~~ 244 (269)
T PRK10941 183 LLDTLKAALMEEKQMELALRASEALLQFDPEDPYEIRDRGLIYAQLDCEHVALSDLSYFVEQ 244 (269)
T ss_pred HHHHHHHHHHHcCcHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCcHHHHHHHHHHHHh
Confidence 35677788999999999999999999999999988888899999999999999988887665
No 328
>KOG0276 consensus Vesicle coat complex COPI, beta' subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=76.08 E-value=20 Score=39.24 Aligned_cols=101 Identities=22% Similarity=0.189 Sum_probs=63.3
Q ss_pred HHhCCChHHHHHHHhccCCCCeeeHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCcccHHHHHHHhhcCCChHHHHHHH
Q 003584 280 YAKCGDLDSARRLLEYSEIDNEVSWNSMIVGFARQGFHKEALSLFKKMHARDIKIDDFTYPSVLNCFASNIDLNNAKSVH 359 (809)
Q Consensus 280 y~~~g~~~~A~~~f~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~i~ 359 (809)
..+.|+++.|.++..+. .+..-|..|..+..+.|++..|.+.|.+... |..|+-.+...|+-+....+-
T Consensus 647 al~lgrl~iA~~la~e~--~s~~Kw~~Lg~~al~~~~l~lA~EC~~~a~d---------~~~LlLl~t~~g~~~~l~~la 715 (794)
T KOG0276|consen 647 ALKLGRLDIAFDLAVEA--NSEVKWRQLGDAALSAGELPLASECFLRARD---------LGSLLLLYTSSGNAEGLAVLA 715 (794)
T ss_pred hhhcCcHHHHHHHHHhh--cchHHHHHHHHHHhhcccchhHHHHHHhhcc---------hhhhhhhhhhcCChhHHHHHH
Confidence 34557777777665433 3456688888888888888888888876643 445666666666666555555
Q ss_pred HHHHHhccCCchHHHHHHHHHHHhcCCHHHHHHHHhhc
Q 003584 360 SLIVKTGFEGYKFVNNALIDMYAKQGNLDCAFMVFNLM 397 (809)
Q Consensus 360 ~~~~~~g~~~~~~~~~~li~~y~~~g~~~~A~~~f~~~ 397 (809)
....+.|.. |.-.-+|...|+++++.+++.+-
T Consensus 716 ~~~~~~g~~------N~AF~~~~l~g~~~~C~~lLi~t 747 (794)
T KOG0276|consen 716 SLAKKQGKN------NLAFLAYFLSGDYEECLELLIST 747 (794)
T ss_pred HHHHhhccc------chHHHHHHHcCCHHHHHHHHHhc
Confidence 555555522 22333466677777777766544
No 329
>PF14853 Fis1_TPR_C: Fis1 C-terminal tetratricopeptide repeat; PDB: 1IYG_A 1PC2_A 1NZN_A 3UUX_C 1Y8M_A 2PQR_A 2PQN_A 3O48_A.
Probab=76.00 E-value=14 Score=26.42 Aligned_cols=49 Identities=20% Similarity=0.118 Sum_probs=34.8
Q ss_pred HHhHhhhhhhcCChhHHHHHHHHHHhCCCccCCceeEEEECCEEEEEEeCCCCCcchHHHHHHHHHHHHHHHHcC
Q 003584 643 YVQLSNMYSTAGKWEDAARVRKLMKSRGIRKEPGCSWVETNSQVHIFISEDRGHPLRTDIYSKIDEIMLLIKEAG 717 (809)
Q Consensus 643 ~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~i~~~l~~l~~~~~~~g 717 (809)
...++-++.+.|++++|.+..+.+.+. .|...+.......+.+.|++.|
T Consensus 4 lY~lAig~ykl~~Y~~A~~~~~~lL~~--------------------------eP~N~Qa~~L~~~i~~~i~kdg 52 (53)
T PF14853_consen 4 LYYLAIGHYKLGEYEKARRYCDALLEI--------------------------EPDNRQAQSLKELIEDKIQKDG 52 (53)
T ss_dssp HHHHHHHHHHTT-HHHHHHHHHHHHHH--------------------------TTS-HHHHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHhhhHHHHHHHHHHHHhh--------------------------CCCcHHHHHHHHHHHHHHhccC
Confidence 456778899999999999999998865 2445555555556667777766
No 330
>KOG4642 consensus Chaperone-dependent E3 ubiquitin protein ligase (contains TPR repeats) [Posttranslational modification, protein turnover, chaperones]
Probab=75.95 E-value=16 Score=35.19 Aligned_cols=83 Identities=12% Similarity=0.083 Sum_probs=65.3
Q ss_pred cCCHHHHHHHHHhCcC-CCCHH-HHHHHHHHHHhcCChhHHHHHHHHHhccCCCCCccHHhHhhhhhhcCChhHHHHHHH
Q 003584 587 SGKLIEAKALLDQMVG-EPDAT-VWKALLSACRVHGDLELGERAANNLFELEPMNAMPYVQLSNMYSTAGKWEDAARVRK 664 (809)
Q Consensus 587 ~g~~~eA~~~~~~m~~-~p~~~-~~~~ll~a~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~ 664 (809)
..++++|..-+.+... .|... -|..=+-.+.+..+++.+..-..+++++.|+....+..|+........+++|+..+.
T Consensus 23 ~k~y~~ai~~y~raI~~nP~~~~Y~tnralchlk~~~~~~v~~dcrralql~~N~vk~h~flg~~~l~s~~~~eaI~~Lq 102 (284)
T KOG4642|consen 23 PKRYDDAIDCYSRAICINPTVASYYTNRALCHLKLKHWEPVEEDCRRALQLDPNLVKAHYFLGQWLLQSKGYDEAIKVLQ 102 (284)
T ss_pred hhhhchHHHHHHHHHhcCCCcchhhhhHHHHHHHhhhhhhhhhhHHHHHhcChHHHHHHHHHHHHHHhhccccHHHHHHH
Confidence 3445566665554443 57664 556666667778889999999999999999999999999999999999999999999
Q ss_pred HHHhC
Q 003584 665 LMKSR 669 (809)
Q Consensus 665 ~m~~~ 669 (809)
+..+.
T Consensus 103 ra~sl 107 (284)
T KOG4642|consen 103 RAYSL 107 (284)
T ss_pred HHHHH
Confidence 88543
No 331
>PHA02875 ankyrin repeat protein; Provisional
Probab=75.68 E-value=1.2e+02 Score=32.92 Aligned_cols=146 Identities=8% Similarity=-0.070 Sum_probs=61.7
Q ss_pred hhhcCCChhHHHHHhhhCCCC---CCcccHHHHHHHHhhCCChHHHHHHHHHHHHCCCCCCcchH--HHHHHHHhccCCh
Q 003584 177 MYAKCKCIFEAEYLFKMFPDG---KNHVAWTTMITGYSQNGYGFKAIECFRDMRVEGVESNQFTF--PSILTACAAVSAR 251 (809)
Q Consensus 177 ~y~~~g~~~~A~~~f~~~~~~---~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~--~~ll~~~~~~~~~ 251 (809)
..++.|+.+.+..+++.-... .+..-++ .+...+..|+. ++++.+.+.|..|+.... .+.+...+..|+.
T Consensus 74 ~A~~~g~~~~v~~Ll~~~~~~~~~~~~~g~t-pL~~A~~~~~~----~iv~~Ll~~gad~~~~~~~g~tpLh~A~~~~~~ 148 (413)
T PHA02875 74 DAVEEGDVKAVEELLDLGKFADDVFYKDGMT-PLHLATILKKL----DIMKLLIARGADPDIPNTDKFSPLHLAVMMGDI 148 (413)
T ss_pred HHHHCCCHHHHHHHHHcCCcccccccCCCCC-HHHHHHHhCCH----HHHHHHHhCCCCCCCCCCCCCCHHHHHHHcCCH
Confidence 344556666655555543220 1111122 22333344544 344455556665543221 1233333445554
Q ss_pred HHHHHHHHHHHHhCCCCchh--HHHHHHHHHHhCCChHHHHHHHhccCCCCeee---HHHHHHHHHhcCChhHHHHHHHH
Q 003584 252 DFGAQVHGCILSSGFEANVY--VQSALIDMYAKCGDLDSARRLLEYSEIDNEVS---WNSMIVGFARQGFHKEALSLFKK 326 (809)
Q Consensus 252 ~~a~~~~~~~~~~g~~~~~~--~~~~Li~~y~~~g~~~~A~~~f~~~~~~~~~~---~~~li~~~~~~g~~~~A~~~~~~ 326 (809)
+..+ .+++.|..++.. ...+-+...+..|+.+-+..+++....++... ..+.+...+..|+. ++.+.
T Consensus 149 ~~v~----~Ll~~g~~~~~~d~~g~TpL~~A~~~g~~eiv~~Ll~~ga~~n~~~~~~~~t~l~~A~~~~~~----~iv~~ 220 (413)
T PHA02875 149 KGIE----LLIDHKACLDIEDCCGCTPLIIAMAKGDIAICKMLLDSGANIDYFGKNGCVAALCYAIENNKI----DIVRL 220 (413)
T ss_pred HHHH----HHHhcCCCCCCCCCCCCCHHHHHHHcCCHHHHHHHHhCCCCCCcCCCCCCchHHHHHHHcCCH----HHHHH
Confidence 4333 333444333221 11223334455566666666666554443221 12333333344443 23444
Q ss_pred HHHCCCCCC
Q 003584 327 MHARDIKID 335 (809)
Q Consensus 327 m~~~g~~p~ 335 (809)
+.+.|..++
T Consensus 221 Ll~~gad~n 229 (413)
T PHA02875 221 FIKRGADCN 229 (413)
T ss_pred HHHCCcCcc
Confidence 445555554
No 332
>PF00637 Clathrin: Region in Clathrin and VPS; InterPro: IPR000547 Proteins synthesized on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. These vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transport []. Clathrin coats contain both clathrin (acts as a scaffold) and adaptor complexes that link clathrin to receptors in coated vesicles. Clathrin-associated protein complexes are believed to interact with the cytoplasmic tails of membrane proteins, leading to their selection and concentration. The two major types of clathrin adaptor complexes are the heterotetrameric adaptor protein (AP) complexes, and the monomeric GGA (Golgi-localising, Gamma-adaptin ear domain homology, ARF-binding proteins) adaptors [, ]. Clathrin is a trimer composed of three heavy chains and three light chains, each monomer projecting outwards like a leg; this three-legged structure is known as a triskelion [, ]. The heavy chains form the legs, their N-terminal beta-propeller regions extending outwards, while their C-terminal alpha-alpha-superhelical regions form the central hub of the triskelion. Peptide motifs can bind between the beta-propeller blades. The light chains appear to have a regulatory role, and may help orient the assembly and disassembly of clathrin coats as they interact with hsc70 uncoating ATPase []. Clathrin triskelia self-polymerise into a curved lattice by twisting individual legs together. The clathrin lattice forms around a vesicle as it buds from the TGN, plasma membrane or endosomes, acting to stabilise the vesicle and facilitate the budding process []. The multiple blades created when the triskelia polymerise are involved in multiple protein interactions, enabling the recruitment of different cargo adaptors and membrane attachment proteins []. This entry represents the 7-fold alpha-alpha-superhelical ARM-type repeat found at the C-terminal of clathrin heavy chains and in VPS (vacuolar protein sorting-associated) proteins. In clathrin heavy chains, the C-terminal 7-fold ARM-type repeats interact to form the central hub of the triskelion. VPS proteins are required for vacuolar assembly and vacuolar traffick, and contain one clathrin-type repeat []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0006886 intracellular protein transport, 0016192 vesicle-mediated transport; PDB: 3LVH_A 3LVG_C 1B89_A 3QIL_L.
Probab=75.58 E-value=2.1 Score=38.36 Aligned_cols=84 Identities=15% Similarity=0.247 Sum_probs=57.7
Q ss_pred HHHHHhccCChHHHHHHHHHHHHhCCCCchhHHHHHHHHHHhCCChHHHHHHHhccCCCCeeeHHHHHHHHHhcCChhHH
Q 003584 241 ILTACAAVSARDFGAQVHGCILSSGFEANVYVQSALIDMYAKCGDLDSARRLLEYSEIDNEVSWNSMIVGFARQGFHKEA 320 (809)
Q Consensus 241 ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~Li~~y~~~g~~~~A~~~f~~~~~~~~~~~~~li~~~~~~g~~~~A 320 (809)
++..+.+.+.++....+++.+++.+...+....+.|+..|++.++.+...++++.... .-...++..+-+.|.+++|
T Consensus 13 vi~~~~~~~~~~~l~~yLe~~~~~~~~~~~~~~~~L~~ly~~~~~~~~l~~~L~~~~~---yd~~~~~~~c~~~~l~~~a 89 (143)
T PF00637_consen 13 VISAFEERNQPEELIEYLEALVKENKENNPDLHTLLLELYIKYDPYEKLLEFLKTSNN---YDLDKALRLCEKHGLYEEA 89 (143)
T ss_dssp CHHHCTTTT-GGGCTCCHHHHHHTSTC-SHHHHHHHHHHHHCTTTCCHHHHTTTSSSS---S-CTHHHHHHHTTTSHHHH
T ss_pred HHHHHHhCCCHHHHHHHHHHHHhcccccCHHHHHHHHHHHHhcCCchHHHHHcccccc---cCHHHHHHHHHhcchHHHH
Confidence 4455555666666666777777666566788889999999999888888888874332 3345667777777777777
Q ss_pred HHHHHHH
Q 003584 321 LSLFKKM 327 (809)
Q Consensus 321 ~~~~~~m 327 (809)
.-++.++
T Consensus 90 ~~Ly~~~ 96 (143)
T PF00637_consen 90 VYLYSKL 96 (143)
T ss_dssp HHHHHCC
T ss_pred HHHHHHc
Confidence 7777765
No 333
>KOG4570 consensus Uncharacterized conserved protein [Function unknown]
Probab=75.42 E-value=25 Score=35.34 Aligned_cols=100 Identities=21% Similarity=0.150 Sum_probs=55.8
Q ss_pred CCchHHHHHHHHhhhcCCChhHHHHHhhhCCCCCCc-----ccHHHHHHHHhhCCChHHHHHHHHHHHHCCCCCCcchHH
Q 003584 165 DLNAFVVTGLVDMYAKCKCIFEAEYLFKMFPDGKNH-----VAWTTMITGYSQNGYGFKAIECFRDMRVEGVESNQFTFP 239 (809)
Q Consensus 165 ~~~~~~~~~li~~y~~~g~~~~A~~~f~~~~~~~~~-----~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~ 239 (809)
.....+...++..-....+++++...+-++..+++. .+-.+.++-+ -.-++++++-++..=.+-|+-||.+|++
T Consensus 61 ~~s~~~Vd~~V~v~~~~~~idd~~~~LyKlRhs~~a~~~~~~~~~~~irll-lky~pq~~i~~l~npIqYGiF~dqf~~c 139 (418)
T KOG4570|consen 61 PVSSLTVDRLVDVISSREEIDDAEYYLYKLRHSPNAWYLRNWTIHTWIRLL-LKYDPQKAIYTLVNPIQYGIFPDQFTFC 139 (418)
T ss_pred CcceeehhhhhhccccccchhHHHHHHHHHhcCcchhhhccccHHHHHHHH-HccChHHHHHHHhCcchhccccchhhHH
Confidence 334444445555555556666666666555442221 1111222222 2235566776666666677777777777
Q ss_pred HHHHHHhccCChHHHHHHHHHHHHhC
Q 003584 240 SILTACAAVSARDFGAQVHGCILSSG 265 (809)
Q Consensus 240 ~ll~~~~~~~~~~~a~~~~~~~~~~g 265 (809)
.+++.+.+.+++..|.++.-.|+...
T Consensus 140 ~l~D~flk~~n~~~aa~vvt~~~~qe 165 (418)
T KOG4570|consen 140 LLMDSFLKKENYKDAASVVTEVMMQE 165 (418)
T ss_pred HHHHHHHhcccHHHHHHHHHHHHHHH
Confidence 77777777777777666666655544
No 334
>PRK15180 Vi polysaccharide biosynthesis protein TviD; Provisional
Probab=75.39 E-value=26 Score=37.15 Aligned_cols=120 Identities=18% Similarity=0.200 Sum_probs=69.5
Q ss_pred hcCChHHHH-HHHHHHHHCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHhHHhhCCCCChHHHHHHHHHHhhcCCHHHH
Q 003584 515 QNGKGKEAL-QFYDQMLARGTKPDYITFVGLLFACSHAGLAENARWYFESMDKVYGIKPGPDHYACMIDLLGRSGKLIEA 593 (809)
Q Consensus 515 ~~g~~~~A~-~l~~~m~~~g~~pd~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~~~~~~~li~~~~~~g~~~eA 593 (809)
..|+.-.|- ++|..+....-.|+.+-+.+.+ ..+.|.++.+.+.+....+ -+.....+..+++..+.+.|++++|
T Consensus 301 ~~gd~~aas~~~~~~lr~~~~~p~~i~l~~~i--~~~lg~ye~~~~~~s~~~~--~~~s~~~~~~~~~r~~~~l~r~~~a 376 (831)
T PRK15180 301 ADGDIIAASQQLFAALRNQQQDPVLIQLRSVI--FSHLGYYEQAYQDISDVEK--IIGTTDSTLRCRLRSLHGLARWREA 376 (831)
T ss_pred hccCHHHHHHHHHHHHHhCCCCchhhHHHHHH--HHHhhhHHHHHHHhhchhh--hhcCCchHHHHHHHhhhchhhHHHH
Confidence 456665554 4555555544455555444443 5677777777777665543 2334455666677777777777777
Q ss_pred HHHHHhCcCC--CCHHHHHHHHHHHHhcCChhHHHHHHHHHhccCCC
Q 003584 594 KALLDQMVGE--PDATVWKALLSACRVHGDLELGERAANNLFELEPM 638 (809)
Q Consensus 594 ~~~~~~m~~~--p~~~~~~~ll~a~~~~g~~~~A~~~~~~~~~~~p~ 638 (809)
...-..|... .++.+...-.......|-++++.-.+++++.+.|+
T Consensus 377 ~s~a~~~l~~eie~~ei~~iaa~sa~~l~~~d~~~~~wk~~~~~~~~ 423 (831)
T PRK15180 377 LSTAEMMLSNEIEDEEVLTVAAGSADALQLFDKSYHYWKRVLLLNPE 423 (831)
T ss_pred HHHHHHHhccccCChhheeeecccHHHHhHHHHHHHHHHHHhccCCh
Confidence 7776666542 23333333334445556667777677777666654
No 335
>PF13374 TPR_10: Tetratricopeptide repeat; PDB: 3CEQ_B 3EDT_H 3NF1_A.
Probab=75.07 E-value=4.9 Score=26.52 Aligned_cols=26 Identities=19% Similarity=0.219 Sum_probs=12.7
Q ss_pred HHHHHHHHHHhcCChhHHHHHHHHHh
Q 003584 608 VWKALLSACRVHGDLELGERAANNLF 633 (809)
Q Consensus 608 ~~~~ll~a~~~~g~~~~A~~~~~~~~ 633 (809)
+++.|...|...|++++|+.++++++
T Consensus 4 ~~~~la~~~~~~g~~~~A~~~~~~al 29 (42)
T PF13374_consen 4 ALNNLANAYRAQGRYEEALELLEEAL 29 (42)
T ss_dssp HHHHHHHHHHHCT-HHHHHHHHHHHH
T ss_pred HHHHHHHHHHhhhhcchhhHHHHHHH
Confidence 44455555555555555555555443
No 336
>KOG1308 consensus Hsp70-interacting protein Hip/Transient component of progesterone receptor complexes and an Hsp70-binding protein [Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=74.82 E-value=1.7 Score=43.86 Aligned_cols=90 Identities=19% Similarity=0.178 Sum_probs=71.2
Q ss_pred hcCCHHHHHHHHHhCcC--CCCHHHHHHHHHHHHhcCChhHHHHHHHHHhccCCCCCccHHhHhhhhhhcCChhHHHHHH
Q 003584 586 RSGKLIEAKALLDQMVG--EPDATVWKALLSACRVHGDLELGERAANNLFELEPMNAMPYVQLSNMYSTAGKWEDAARVR 663 (809)
Q Consensus 586 ~~g~~~eA~~~~~~m~~--~p~~~~~~~ll~a~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~ 663 (809)
..|.+++|++.|..... .|....+..-.+++.+.+....|++-+..+++++|+...-|-.-+.+....|+|++|.+.+
T Consensus 126 n~G~~~~ai~~~t~ai~lnp~~a~l~~kr~sv~lkl~kp~~airD~d~A~ein~Dsa~~ykfrg~A~rllg~~e~aa~dl 205 (377)
T KOG1308|consen 126 NDGEFDTAIELFTSAIELNPPLAILYAKRASVFLKLKKPNAAIRDCDFAIEINPDSAKGYKFRGYAERLLGNWEEAAHDL 205 (377)
T ss_pred cCcchhhhhcccccccccCCchhhhcccccceeeeccCCchhhhhhhhhhccCcccccccchhhHHHHHhhchHHHHHHH
Confidence 45678888888877664 2445566666777888888888999899999999998888888888888899999999999
Q ss_pred HHHHhCCCccCC
Q 003584 664 KLMKSRGIRKEP 675 (809)
Q Consensus 664 ~~m~~~~~~~~~ 675 (809)
....+.++....
T Consensus 206 ~~a~kld~dE~~ 217 (377)
T KOG1308|consen 206 ALACKLDYDEAN 217 (377)
T ss_pred HHHHhccccHHH
Confidence 888877765443
No 337
>TIGR02508 type_III_yscG type III secretion protein, YscG family. YscG is a molecular chaperone for YscE, where both are part of the type III secretion system that in Yersinia is designated Ysc (Yersinia secretion). The secretion system delivers effector proteins, designate Yops (Yersinia outer proteins) in Yersinia. This family consists of YscG of Yersinia, and functionally equivalent type III secretion machinery protein in other species: AscG in Aeromonas, LscG in Photorhabdus luminescens, etc.
Probab=74.64 E-value=46 Score=27.29 Aligned_cols=61 Identities=16% Similarity=0.184 Sum_probs=46.2
Q ss_pred HHHHHhcCCHHHHHHHHhhcCCCCHhHHHHHHHHHHhcCCHHHHHHHHHHHhhcCCccCHhHHH
Q 003584 378 IDMYAKQGNLDCAFMVFNLMQDKDVISWTSLITGCAYHGSYEEALKYFSDMRISGICPDHVVVS 441 (809)
Q Consensus 378 i~~y~~~g~~~~A~~~f~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~ 441 (809)
+..+...|++++|..+.+....||...|-+|-. .+.|..+++..-+.+|..+| .|...+|.
T Consensus 46 lsSLmNrG~Yq~Al~l~~~~~~pdlepw~ALce--~rlGl~s~l~~rl~rla~sg-~p~lq~Fa 106 (115)
T TIGR02508 46 LSSLMNRGDYQSALQLGNKLCYPDLEPWLALCE--WRLGLGSALESRLNRLAASG-DPRLQTFV 106 (115)
T ss_pred HHHHHccchHHHHHHhcCCCCCchHHHHHHHHH--HhhccHHHHHHHHHHHHhCC-CHHHHHHH
Confidence 445677899999999999999999999988755 36677777777777777766 55555553
No 338
>KOG1550 consensus Extracellular protein SEL-1 and related proteins [Cell wall/membrane/envelope biogenesis; Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=74.42 E-value=1.6e+02 Score=33.41 Aligned_cols=77 Identities=17% Similarity=0.008 Sum_probs=43.4
Q ss_pred CHHHHHHHHHhCcCCCCHHHHHHHHHHHHhc----CChhHHHHHHHHHhccCCCCCccHHhHhhhhhh----cCChhHHH
Q 003584 589 KLIEAKALLDQMVGEPDATVWKALLSACRVH----GDLELGERAANNLFELEPMNAMPYVQLSNMYST----AGKWEDAA 660 (809)
Q Consensus 589 ~~~eA~~~~~~m~~~p~~~~~~~ll~a~~~~----g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~----~g~~~~A~ 660 (809)
+.+.+...+.+...+-+......|...|..- .+.+.|...+.++.+.. +.....|+.++-+ .. +..|.
T Consensus 454 ~~~~~~~~~~~a~~~g~~~a~~~lgd~y~~g~g~~~d~~~a~~~y~~a~~~~---~~~~~nlg~~~e~g~g~~~-~~~a~ 529 (552)
T KOG1550|consen 454 TLERAFSLYSRAAAQGNADAILKLGDYYYYGLGTGRDPEKAAAQYARASEQG---AQALFNLGYMHEHGEGIKV-LHLAK 529 (552)
T ss_pred chhHHHHHHHHHHhccCHHHHhhhcceeeecCCCCCChHHHHHHHHHHHHhh---hHHHhhhhhHHhcCcCcch-hHHHH
Confidence 4555666666555445555555555444333 24666666666665544 5556666666643 23 56777
Q ss_pred HHHHHHHhC
Q 003584 661 RVRKLMKSR 669 (809)
Q Consensus 661 ~~~~~m~~~ 669 (809)
++++...+.
T Consensus 530 ~~~~~~~~~ 538 (552)
T KOG1550|consen 530 RYYDQASEE 538 (552)
T ss_pred HHHHHHHhc
Confidence 777766554
No 339
>PF13374 TPR_10: Tetratricopeptide repeat; PDB: 3CEQ_B 3EDT_H 3NF1_A.
Probab=73.94 E-value=4.3 Score=26.78 Aligned_cols=29 Identities=21% Similarity=0.322 Sum_probs=24.4
Q ss_pred ccHHhHhhhhhhcCChhHHHHHHHHHHhC
Q 003584 641 MPYVQLSNMYSTAGKWEDAARVRKLMKSR 669 (809)
Q Consensus 641 ~~~~~l~~~~~~~g~~~~A~~~~~~m~~~ 669 (809)
.++..|+.+|...|++++|..++++..+.
T Consensus 3 ~~~~~la~~~~~~g~~~~A~~~~~~al~~ 31 (42)
T PF13374_consen 3 SALNNLANAYRAQGRYEEALELLEEALEI 31 (42)
T ss_dssp HHHHHHHHHHHHCT-HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhhhhcchhhHHHHHHHHH
Confidence 35788999999999999999999988653
No 340
>COG4785 NlpI Lipoprotein NlpI, contains TPR repeats [General function prediction only]
Probab=73.86 E-value=8.9 Score=36.20 Aligned_cols=91 Identities=18% Similarity=0.210 Sum_probs=57.7
Q ss_pred HHHccCCHHHHHHHHHHhHHhhCCCCCh-HHHHHHHHHHhhcCCHHHHHHHHHhCcC-CCC-HHHHHHHHHHHHhcCChh
Q 003584 547 ACSHAGLAENARWYFESMDKVYGIKPGP-DHYACMIDLLGRSGKLIEAKALLDQMVG-EPD-ATVWKALLSACRVHGDLE 623 (809)
Q Consensus 547 a~~~~g~~~~a~~~~~~m~~~~~~~p~~-~~~~~li~~~~~~g~~~eA~~~~~~m~~-~p~-~~~~~~ll~a~~~~g~~~ 623 (809)
-|-..|.+.-|+.-|.... .+.|+. .+||-|.--+...|+++.|.+.|+...+ .|. ..+...-.-++.--|+++
T Consensus 74 lYDSlGL~~LAR~DftQaL---ai~P~m~~vfNyLG~Yl~~a~~fdaa~eaFds~~ELDp~y~Ya~lNRgi~~YY~gR~~ 150 (297)
T COG4785 74 LYDSLGLRALARNDFSQAL---AIRPDMPEVFNYLGIYLTQAGNFDAAYEAFDSVLELDPTYNYAHLNRGIALYYGGRYK 150 (297)
T ss_pred hhhhhhHHHHHhhhhhhhh---hcCCCcHHHHHHHHHHHHhcccchHHHHHhhhHhccCCcchHHHhccceeeeecCchH
Confidence 3566677777777666544 566653 5677777677778888888888877663 221 112222223344557778
Q ss_pred HHHHHHHHHhccCCCCC
Q 003584 624 LGERAANNLFELEPMNA 640 (809)
Q Consensus 624 ~A~~~~~~~~~~~p~~~ 640 (809)
.|.+-+.+..+.+|+||
T Consensus 151 LAq~d~~~fYQ~D~~DP 167 (297)
T COG4785 151 LAQDDLLAFYQDDPNDP 167 (297)
T ss_pred hhHHHHHHHHhcCCCCh
Confidence 88777777777777765
No 341
>cd00923 Cyt_c_Oxidase_Va Cytochrome c oxidase subunit Va. Cytochrome c oxidase (CcO), the terminal oxidase in the respiratory chains of eukaryotes and most bacteria, is a multi-chain transmembrane protein located in the inner membrane of mitochondria and the cell membrane of prokaryotes. It catalyzes the reduction of O2 and simultaneously pumps protons across the membrane. The number of subunits varies from three to five in bacteria and up to 13 in mammalian mitochondria. Subunits I, II, and III of mammalian CcO are encoded within the mitochondrial genome and the remaining 10 subunits are encoded within the nuclear genome. Found only in eukaryotes, subunit Va is one of three mammalian subunits that lacks a transmembrane region. Subunit Va is located on the matrix side of the membrane and binds thyroid hormone T2, releasing allosteric inhibition caused by the binding of ATP to subunit IV and allowing high turnover at elevated intramitochondrial ATP/ADP ratios.
Probab=73.80 E-value=27 Score=28.39 Aligned_cols=62 Identities=16% Similarity=0.199 Sum_probs=47.4
Q ss_pred ChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHhHHhhCCCCChHHHHHHH
Q 003584 518 KGKEALQFYDQMLARGTKPDYITFVGLLFACSHAGLAENARWYFESMDKVYGIKPGPDHYACMI 581 (809)
Q Consensus 518 ~~~~A~~l~~~m~~~g~~pd~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~~~~~~~li 581 (809)
+.-++.+-++.+....+-|+.....+.+.||.+.+++..|..+|+..+.+.+. +...|..++
T Consensus 22 D~we~rr~mN~l~~~DlVP~P~ii~aaLrAcRRvND~alAVR~lE~vK~K~~~--~~~~y~~~l 83 (103)
T cd00923 22 DGWELRRGLNNLFGYDLVPEPKVIEAALRACRRVNDFALAVRILEAIKDKCGA--HKEIYPYIL 83 (103)
T ss_pred cHHHHHHHHHHHhccccCCCcHHHHHHHHHHHHhhhHHHHHHHHHHHHHHccC--chhhHHHHH
Confidence 34466666777777788999999999999999999999999999887754332 444565554
No 342
>PF13431 TPR_17: Tetratricopeptide repeat
Probab=73.75 E-value=5.4 Score=25.30 Aligned_cols=24 Identities=25% Similarity=0.374 Sum_probs=17.4
Q ss_pred CCchhHHHHHHHHHHhCCChHHHH
Q 003584 267 EANVYVQSALIDMYAKCGDLDSAR 290 (809)
Q Consensus 267 ~~~~~~~~~Li~~y~~~g~~~~A~ 290 (809)
+.|...|+.|...|...|+.++|+
T Consensus 10 P~n~~a~~nla~~~~~~g~~~~A~ 33 (34)
T PF13431_consen 10 PNNAEAYNNLANLYLNQGDYEEAI 33 (34)
T ss_pred CCCHHHHHHHHHHHHHCcCHHhhc
Confidence 456677777777777777777765
No 343
>PF02284 COX5A: Cytochrome c oxidase subunit Va; InterPro: IPR003204 Cytochrome c oxidase (1.9.3.1 from EC) is an oligomeric enzymatic complex which is a component of the respiratory chain complex and is involved in the transfer of electrons from cytochrome c to oxygen []. In eukaryotes this enzyme complex is located in the mitochondrial inner membrane; in aerobic prokaryotes it is found in the plasma membrane. In eukaryotes, in addition to the three large subunits, I, II and III, that form the catalytic centre of the enzyme complex, there are a variable number of small polypeptidic subunits. One of these subunits is known as Va.; GO: 0004129 cytochrome-c oxidase activity; PDB: 2DYR_R 3AG1_E 3ABL_E 1V54_R 2EIJ_R 1OCR_E 2DYS_E 2EIM_E 2OCC_E 3ASN_R ....
Probab=72.97 E-value=30 Score=28.48 Aligned_cols=60 Identities=17% Similarity=0.198 Sum_probs=42.5
Q ss_pred HHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHhHHhhCCCCChHHHHHHHH
Q 003584 521 EALQFYDQMLARGTKPDYITFVGLLFACSHAGLAENARWYFESMDKVYGIKPGPDHYACMID 582 (809)
Q Consensus 521 ~A~~l~~~m~~~g~~pd~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~~~~~~~li~ 582 (809)
+..+-++.+....+-|+.....+.|.||.+.+++..|..+|+.++.+.+.. ...|..+++
T Consensus 28 e~rrglN~l~~~DlVP~P~ii~aALrAcRRvND~a~AVR~lE~iK~K~~~~--~~~Y~~~lq 87 (108)
T PF02284_consen 28 ELRRGLNNLFGYDLVPEPKIIEAALRACRRVNDFALAVRILEGIKDKCGNK--KEIYPYILQ 87 (108)
T ss_dssp HHHHHHHHHTTSSB---HHHHHHHHHHHHHTT-HHHHHHHHHHHHHHTTT---TTHHHHHHH
T ss_pred HHHHHHHHHhccccCCChHHHHHHHHHHHHhhhHHHHHHHHHHHHHHccCh--HHHHHHHHH
Confidence 555666677777889999999999999999999999999999887764433 335665543
No 344
>KOG1586 consensus Protein required for fusion of vesicles in vesicular transport, alpha-SNAP [Intracellular trafficking, secretion, and vesicular transport]
Probab=72.80 E-value=95 Score=30.08 Aligned_cols=60 Identities=18% Similarity=0.272 Sum_probs=34.1
Q ss_pred HHhhcCCHHHHHHHHHhCcC---CCCHHHHHH---HH--HHHHhc-CChhHHHHHHHHHhccCCCCCcc
Q 003584 583 LLGRSGKLIEAKALLDQMVG---EPDATVWKA---LL--SACRVH-GDLELGERAANNLFELEPMNAMP 642 (809)
Q Consensus 583 ~~~~~g~~~eA~~~~~~m~~---~p~~~~~~~---ll--~a~~~~-g~~~~A~~~~~~~~~~~p~~~~~ 642 (809)
.-+..|++.+|+++|++... ..+..-|.. ++ ..|.-. .+.-.+...+++-.+++|.-..+
T Consensus 163 yaa~leqY~~Ai~iyeqva~~s~~n~LLKys~KdyflkAgLChl~~~D~v~a~~ALeky~~~dP~F~ds 231 (288)
T KOG1586|consen 163 YAAQLEQYSKAIDIYEQVARSSLDNNLLKYSAKDYFLKAGLCHLCKADEVNAQRALEKYQELDPAFTDS 231 (288)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhccchHHHhHHHHHHHHHHHHhHhcccHHHHHHHHHHHHhcCCccccc
Confidence 34456777888888776652 122222322 11 122222 56666778888888899964443
No 345
>PF06552 TOM20_plant: Plant specific mitochondrial import receptor subunit TOM20; InterPro: IPR010547 This family consists of several plant specific mitochondrial import receptor subunit TOM20 (translocase of outer membrane 20 kDa subunit) proteins. Most mitochondrial proteins are encoded by the nuclear genome, and are synthesised in the cytosol. TOM20 is a general import receptor that binds to mitochondrial pre-sequences in the early step of protein import into the mitochondria [].; GO: 0045040 protein import into mitochondrial outer membrane, 0005742 mitochondrial outer membrane translocase complex; PDB: 1ZU2_A.
Probab=72.52 E-value=30 Score=31.99 Aligned_cols=43 Identities=16% Similarity=0.287 Sum_probs=25.0
Q ss_pred hhHHHHHHHHHhccCCCCCccHHhHhhhhhhcCChhHHHHHHHHHHhCCC
Q 003584 622 LELGERAANNLFELEPMNAMPYVQLSNMYSTAGKWEDAARVRKLMKSRGI 671 (809)
Q Consensus 622 ~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~ 671 (809)
+++|...|+++...+|+|.. |..-..+. .+|-++-.++...+.
T Consensus 96 F~kA~~~FqkAv~~~P~ne~-Y~ksLe~~------~kap~lh~e~~~~~~ 138 (186)
T PF06552_consen 96 FEKATEYFQKAVDEDPNNEL-YRKSLEMA------AKAPELHMEIHKQGL 138 (186)
T ss_dssp HHHHHHHHHHHHHH-TT-HH-HHHHHHHH------HTHHHHHHHHHHSSS
T ss_pred HHHHHHHHHHHHhcCCCcHH-HHHHHHHH------HhhHHHHHHHHHHHh
Confidence 56777888888999997754 33322332 345566666655554
No 346
>COG3947 Response regulator containing CheY-like receiver and SARP domains [Signal transduction mechanisms]
Probab=72.48 E-value=9.5 Score=37.73 Aligned_cols=60 Identities=13% Similarity=0.071 Sum_probs=53.4
Q ss_pred HHHHHHHHHhcCChhHHHHHHHHHhccCCCCCccHHhHhhhhhhcCChhHHHHHHHHHHh
Q 003584 609 WKALLSACRVHGDLELGERAANNLFELEPMNAMPYVQLSNMYSTAGKWEDAARVRKLMKS 668 (809)
Q Consensus 609 ~~~ll~a~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~ 668 (809)
.+.....|...|.+.+|.++.++++.++|-+...+-.|.+.|+..|+--.|.+-++++.+
T Consensus 282 lgkva~~yle~g~~neAi~l~qr~ltldpL~e~~nk~lm~~la~~gD~is~~khyerya~ 341 (361)
T COG3947 282 LGKVARAYLEAGKPNEAIQLHQRALTLDPLSEQDNKGLMASLATLGDEISAIKHYERYAE 341 (361)
T ss_pred HHHHHHHHHHcCChHHHHHHHHHHhhcChhhhHHHHHHHHHHHHhccchhhhhHHHHHHH
Confidence 344457889999999999999999999999999999999999999999999888888864
No 347
>KOG3364 consensus Membrane protein involved in organellar division [Cell wall/membrane/envelope biogenesis]
Probab=71.30 E-value=44 Score=29.19 Aligned_cols=49 Identities=12% Similarity=0.087 Sum_probs=26.8
Q ss_pred ChhHHHHHHHHHhc-cCCCCC-ccHHhHhhhhhhcCChhHHHHHHHHHHhC
Q 003584 621 DLELGERAANNLFE-LEPMNA-MPYVQLSNMYSTAGKWEDAARVRKLMKSR 669 (809)
Q Consensus 621 ~~~~A~~~~~~~~~-~~p~~~-~~~~~l~~~~~~~g~~~~A~~~~~~m~~~ 669 (809)
+..+++.+++.+++ -.|... .....|+-.+++.|+++.+.++.+...+.
T Consensus 50 dv~~GI~iLe~l~~~~~~~~rRe~lyYLAvg~yRlkeY~~s~~yvd~ll~~ 100 (149)
T KOG3364|consen 50 DVQEGIVILEDLLKSAHPERRRECLYYLAVGHYRLKEYSKSLRYVDALLET 100 (149)
T ss_pred HHHHhHHHHHHHhhhcCcccchhhhhhhHHHHHHHhhHHHHHHHHHHHHhh
Confidence 35556666666665 233322 22334555666666666666666665543
No 348
>KOG4279 consensus Serine/threonine protein kinase [Signal transduction mechanisms]
Probab=71.14 E-value=57 Score=36.88 Aligned_cols=184 Identities=18% Similarity=0.249 Sum_probs=106.9
Q ss_pred hHHHHHHHHHHhcCCHHHHHHHHHHHhhcCCccCHh----------HHHHHHHHHhcccchhHHHHHHHHHHHhCCCCCh
Q 003584 403 ISWTSLITGCAYHGSYEEALKYFSDMRISGICPDHV----------VVSSILSACAELTVLEFGQQVHAVFLKSGGCSSL 472 (809)
Q Consensus 403 ~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~----------t~~~ll~a~~~~~~~~~a~~~~~~~~~~g~~~~~ 472 (809)
.+-..++-.|-...+++..+++.+.++.. ||.. .|...|+-=-+-|+-++|....--+++...+..+
T Consensus 202 d~V~nlmlSyRDvQdY~amirLVe~Lk~i---P~t~~vve~~nv~f~YaFALNRRNr~GDRakAL~~~l~lve~eg~vap 278 (1226)
T KOG4279|consen 202 DTVSNLMLSYRDVQDYDAMIRLVEDLKRI---PDTLKVVETHNVRFHYAFALNRRNRPGDRAKALNTVLPLVEKEGPVAP 278 (1226)
T ss_pred HHHHHHHhhhccccchHHHHHHHHHHHhC---cchhhhhccCceEEEeeehhcccCCCccHHHHHHHHHHHHHhcCCCCC
Confidence 34556667788888888888888888763 4322 2222333333445666666554444432211111
Q ss_pred hHHhHHHHHHHhcCCHHHHHHHHHhcCCCCeeechHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHH---HHHHHHHHH
Q 003584 473 SVDNSLVLVYAKCGCINDANRVFDSMHTRDVITWTALIMGCAQNGKGKEALQFYDQMLARGTKPDYIT---FVGLLFACS 549 (809)
Q Consensus 473 ~~~~~li~~y~k~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~pd~~t---~~~ll~a~~ 549 (809)
++|+-||++ +..|- +-+.|...+..+.|.+.|++.-+ +.|+..+ +..|+.+-.
T Consensus 279 -------Dm~Cl~GRI------YKDmF---------~~S~ytDa~s~~~a~~WyrkaFe--veP~~~sGIN~atLL~aaG 334 (1226)
T KOG4279|consen 279 -------DMYCLCGRI------YKDMF---------IASNYTDAESLNHAIEWYRKAFE--VEPLEYSGINLATLLRAAG 334 (1226)
T ss_pred -------ceeeeechh------hhhhh---------hccCCcchhhHHHHHHHHHHHhc--cCchhhccccHHHHHHHhh
Confidence 345555543 22221 12234556667888899988877 5777643 444444322
Q ss_pred ccCCHHHHHHHHHHhHHhhCCCCChHHHHHHHHHHhhcCCHHHHHHHHHhCcCCCCHHHHHHHHHHHHhcCChhHHHHHH
Q 003584 550 HAGLAENARWYFESMDKVYGIKPGPDHYACMIDLLGRSGKLIEAKALLDQMVGEPDATVWKALLSACRVHGDLELGERAA 629 (809)
Q Consensus 550 ~~g~~~~a~~~~~~m~~~~~~~p~~~~~~~li~~~~~~g~~~eA~~~~~~m~~~p~~~~~~~ll~a~~~~g~~~~A~~~~ 629 (809)
+ .++...++ .. .--.|-.+++|.|.++.-.++++-. ..+.+-.-.+|+..|.++.
T Consensus 335 ~--~Fens~El----q~---------IgmkLn~LlgrKG~leklq~YWdV~----------~y~~asVLAnd~~kaiqAa 389 (1226)
T KOG4279|consen 335 E--HFENSLEL----QQ---------IGMKLNSLLGRKGALEKLQEYWDVA----------TYFEASVLANDYQKAIQAA 389 (1226)
T ss_pred h--hccchHHH----HH---------HHHHHHHHhhccchHHHHHHHHhHH----------HhhhhhhhccCHHHHHHHH
Confidence 1 11111111 10 1123456789999999888887542 2456666778999999999
Q ss_pred HHHhccCCC
Q 003584 630 NNLFELEPM 638 (809)
Q Consensus 630 ~~~~~~~p~ 638 (809)
++|+++.|+
T Consensus 390 e~mfKLk~P 398 (1226)
T KOG4279|consen 390 EMMFKLKPP 398 (1226)
T ss_pred HHHhccCCc
Confidence 999999985
No 349
>KOG0403 consensus Neoplastic transformation suppressor Pdcd4/MA-3, contains MA3 domain [Signal transduction mechanisms]
Probab=70.92 E-value=1.5e+02 Score=31.59 Aligned_cols=58 Identities=16% Similarity=0.202 Sum_probs=46.2
Q ss_pred HHHHHHHHhcCCHHHHHHHHhhcCCC---CHhHHHHHHHHHHhcCCHHHHHHHHHHHhhcC
Q 003584 375 NALIDMYAKQGNLDCAFMVFNLMQDK---DVISWTSLITGCAYHGSYEEALKYFSDMRISG 432 (809)
Q Consensus 375 ~~li~~y~~~g~~~~A~~~f~~~~~~---~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g 432 (809)
..|+.-|...|++.+|.....++.-| ..+.+.+++.+.-+.|+-...+.++++.-..|
T Consensus 513 ~~LLeEY~~~GdisEA~~CikeLgmPfFhHEvVkkAlVm~mEkk~d~t~~ldLLk~cf~sg 573 (645)
T KOG0403|consen 513 DMLLEEYELSGDISEACHCIKELGMPFFHHEVVKKALVMVMEKKGDSTMILDLLKECFKSG 573 (645)
T ss_pred HHHHHHHHhccchHHHHHHHHHhCCCcchHHHHHHHHHHHHHhcCcHHHHHHHHHHHHhcC
Confidence 45777788899999999999887765 45778888888888888877777777776665
No 350
>TIGR02561 HrpB1_HrpK type III secretion protein HrpB1/HrpK. This gene is found within type III secretion operons in a limited range of species including Xanthomonas, Ralstonia and Burkholderia.
Probab=70.82 E-value=68 Score=28.65 Aligned_cols=65 Identities=20% Similarity=0.201 Sum_probs=39.3
Q ss_pred HccCCHHHHHHHHHHhHHhhCCCCChH-HHHHHHHHHhhcCCHHHHHHHHHhCcCCC-CHHHHHHHHHHH
Q 003584 549 SHAGLAENARWYFESMDKVYGIKPGPD-HYACMIDLLGRSGKLIEAKALLDQMVGEP-DATVWKALLSAC 616 (809)
Q Consensus 549 ~~~g~~~~a~~~~~~m~~~~~~~p~~~-~~~~li~~~~~~g~~~eA~~~~~~m~~~p-~~~~~~~ll~a~ 616 (809)
...++.+++..+++.|. -+.|+.. .-..-+-.+.+.|+++||..+|++....+ ....-..|+..|
T Consensus 21 L~~~d~~D~e~lLdALr---vLrP~~~e~d~~dg~l~i~rg~w~eA~rvlr~l~~~~~~~p~~kAL~A~C 87 (153)
T TIGR02561 21 LRSADPYDAQAMLDALR---VLRPNLKELDMFDGWLLIARGNYDEAARILRELLSSAGAPPYGKALLALC 87 (153)
T ss_pred HhcCCHHHHHHHHHHHH---HhCCCccccchhHHHHHHHcCCHHHHHHHHHhhhccCCCchHHHHHHHHH
Confidence 34677777777777775 4455432 22223345678888888888888887653 333333444444
No 351
>KOG0376 consensus Serine-threonine phosphatase 2A, catalytic subunit [General function prediction only]
Probab=70.61 E-value=8.1 Score=41.12 Aligned_cols=87 Identities=15% Similarity=0.120 Sum_probs=69.8
Q ss_pred HHHhhcCCHHHHHHHHHhCcC-CCCHH-HHHHHHHHHHhcCChhHHHHHHHHHhccCCCCCccHHhHhhhhhhcCChhHH
Q 003584 582 DLLGRSGKLIEAKALLDQMVG-EPDAT-VWKALLSACRVHGDLELGERAANNLFELEPMNAMPYVQLSNMYSTAGKWEDA 659 (809)
Q Consensus 582 ~~~~~~g~~~eA~~~~~~m~~-~p~~~-~~~~ll~a~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A 659 (809)
+-+...+.++.|..++.++.. +|+-. .|..-..++.+.+++..|+.-+.++++++|.....|+.-+.++.+.+++.+|
T Consensus 12 n~~l~~~~fd~avdlysKaI~ldpnca~~~anRa~a~lK~e~~~~Al~Da~kaie~dP~~~K~Y~rrg~a~m~l~~~~~A 91 (476)
T KOG0376|consen 12 NEALKDKVFDVAVDLYSKAIELDPNCAIYFANRALAHLKVESFGGALHDALKAIELDPTYIKAYVRRGTAVMALGEFKKA 91 (476)
T ss_pred hhhcccchHHHHHHHHHHHHhcCCcceeeechhhhhheeechhhhHHHHHHhhhhcCchhhheeeeccHHHHhHHHHHHH
Confidence 345566778888888887775 56544 4444447888999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHh
Q 003584 660 ARVRKLMKS 668 (809)
Q Consensus 660 ~~~~~~m~~ 668 (809)
...++....
T Consensus 92 ~~~l~~~~~ 100 (476)
T KOG0376|consen 92 LLDLEKVKK 100 (476)
T ss_pred HHHHHHhhh
Confidence 998887553
No 352
>COG2909 MalT ATP-dependent transcriptional regulator [Transcription]
Probab=70.11 E-value=2.3e+02 Score=33.31 Aligned_cols=184 Identities=15% Similarity=0.151 Sum_probs=95.2
Q ss_pred hcCCHHHHHHHHHhcC----CCCe-------eechHHHHH-HHhcCChHHHHHHHHHHHHC----CCCCCHHHHHHHHHH
Q 003584 484 KCGCINDANRVFDSMH----TRDV-------ITWTALIMG-CAQNGKGKEALQFYDQMLAR----GTKPDYITFVGLLFA 547 (809)
Q Consensus 484 k~g~~~~A~~~~~~~~----~~~~-------~~~~~li~~-~~~~g~~~~A~~l~~~m~~~----g~~pd~~t~~~ll~a 547 (809)
...++++|..+..+.. .|+. ..|+++-.- ....|++++|+++-+..... -..+..+.+..+..+
T Consensus 427 s~~r~~ea~~li~~l~~~l~~~~~~~~~~l~ae~~aL~a~val~~~~~e~a~~lar~al~~L~~~~~~~r~~~~sv~~~a 506 (894)
T COG2909 427 SQHRLAEAETLIARLEHFLKAPMHSRQGDLLAEFQALRAQVALNRGDPEEAEDLARLALVQLPEAAYRSRIVALSVLGEA 506 (894)
T ss_pred HccChHHHHHHHHHHHHHhCcCcccchhhHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhcccccchhhhhhhhhhhHH
Confidence 3456666666655443 2222 144444332 23467778888877776653 122334455666667
Q ss_pred HHccCCHHHHHHHHHHhHHhhCCCCChHHHHHHH-----HHHhhcCCHHH--HHHHHHhCcC-----CC----CHHHHHH
Q 003584 548 CSHAGLAENARWYFESMDKVYGIKPGPDHYACMI-----DLLGRSGKLIE--AKALLDQMVG-----EP----DATVWKA 611 (809)
Q Consensus 548 ~~~~g~~~~a~~~~~~m~~~~~~~p~~~~~~~li-----~~~~~~g~~~e--A~~~~~~m~~-----~p----~~~~~~~ 611 (809)
..-.|++++|..+.+...+. .-.-+..++..++ ..+..+|+... ....|..... +| -..+...
T Consensus 507 ~~~~G~~~~Al~~~~~a~~~-a~~~~~~~l~~~~~~~~s~il~~qGq~~~a~~~~~~~~~~~q~l~q~~~~~f~~~~r~~ 585 (894)
T COG2909 507 AHIRGELTQALALMQQAEQM-ARQHDVYHLALWSLLQQSEILEAQGQVARAEQEKAFNLIREQHLEQKPRHEFLVRIRAQ 585 (894)
T ss_pred HHHhchHHHHHHHHHHHHHH-HHHcccHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHhhhcccchhHHHHHHH
Confidence 77778888888776655433 2222333333222 23455663222 2222222111 12 1223444
Q ss_pred HHHHHHhcCChhHHHHHHHHHhccC----CCCCc---cHHhHhhhhhhcCChhHHHHHHHHHHhCCC
Q 003584 612 LLSACRVHGDLELGERAANNLFELE----PMNAM---PYVQLSNMYSTAGKWEDAARVRKLMKSRGI 671 (809)
Q Consensus 612 ll~a~~~~g~~~~A~~~~~~~~~~~----p~~~~---~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~ 671 (809)
++.++.+ .+.+..-+.+.+++. |..-. .+..|+.++...|+.++|...+..+..-..
T Consensus 586 ll~~~~r---~~~~~~ear~~~~~~~~~~~~~~~~~~~~~~LA~l~~~~Gdl~~A~~~l~~~~~l~~ 649 (894)
T COG2909 586 LLRAWLR---LDLAEAEARLGIEVGSVYTPQPLLSRLALSMLAELEFLRGDLDKALAQLDELERLLL 649 (894)
T ss_pred HHHHHHH---HhhhhHHhhhcchhhhhcccchhHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHhc
Confidence 4444443 555555555444432 22111 233678888888999999888888876543
No 353
>PF15161 Neuropep_like: Neuropeptide-like
Probab=69.41 E-value=2.1 Score=29.87 Aligned_cols=18 Identities=28% Similarity=0.654 Sum_probs=13.0
Q ss_pred cccccCcchhHHHHHHhhh
Q 003584 764 KNLRVCGDCHTAMKYISAV 782 (809)
Q Consensus 764 kn~r~c~dch~~~k~~s~~ 782 (809)
..-|-|.|||.+- |+-+.
T Consensus 11 aesRPCVDCHAFe-fmqRA 28 (65)
T PF15161_consen 11 AESRPCVDCHAFE-FMQRA 28 (65)
T ss_pred CCCCCchhhHHHH-HHHHH
Confidence 4578999999875 55543
No 354
>PF13174 TPR_6: Tetratricopeptide repeat; PDB: 3QKY_A 2XEV_A 3URZ_B 2Q7F_A.
Probab=69.29 E-value=4.6 Score=24.94 Aligned_cols=28 Identities=18% Similarity=0.348 Sum_probs=24.6
Q ss_pred cHHhHhhhhhhcCChhHHHHHHHHHHhC
Q 003584 642 PYVQLSNMYSTAGKWEDAARVRKLMKSR 669 (809)
Q Consensus 642 ~~~~l~~~~~~~g~~~~A~~~~~~m~~~ 669 (809)
++..++.+|.+.|++++|.+.++++.+.
T Consensus 2 a~~~~a~~~~~~g~~~~A~~~~~~~~~~ 29 (33)
T PF13174_consen 2 ALYRLARCYYKLGDYDEAIEYFQRLIKR 29 (33)
T ss_dssp HHHHHHHHHHHHCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHccCHHHHHHHHHHHHHH
Confidence 4567899999999999999999998765
No 355
>PF11207 DUF2989: Protein of unknown function (DUF2989); InterPro: IPR021372 Some members in this bacterial family of proteins are annotated as lipoproteins however this cannot be confirmed.
Probab=69.09 E-value=40 Score=31.81 Aligned_cols=74 Identities=11% Similarity=-0.017 Sum_probs=40.3
Q ss_pred HHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHhHHhhC--CCCChHHHHHHHHHHhhcCCHHHHH
Q 003584 520 KEALQFYDQMLARGTKPDYITFVGLLFACSHAGLAENARWYFESMDKVYG--IKPGPDHYACMIDLLGRSGKLIEAK 594 (809)
Q Consensus 520 ~~A~~l~~~m~~~g~~pd~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~--~~p~~~~~~~li~~~~~~g~~~eA~ 594 (809)
++|...|-++...+.--+...... +..|-...+.+++++++....+.+. -.+|++.+.+|+..|.+.|+++.|.
T Consensus 123 ~~A~~~fL~~E~~~~l~t~elq~a-LAtyY~krD~~Kt~~ll~~~L~l~~~~~~~n~eil~sLas~~~~~~~~e~AY 198 (203)
T PF11207_consen 123 QEALRRFLQLEGTPELETAELQYA-LATYYTKRDPEKTIQLLLRALELSNPDDNFNPEILKSLASIYQKLKNYEQAY 198 (203)
T ss_pred HHHHHHHHHHcCCCCCCCHHHHHH-HHHHHHccCHHHHHHHHHHHHHhcCCCCCCCHHHHHHHHHHHHHhcchhhhh
Confidence 456666666666553333333333 3333335566666666655544322 1355666666666666666666654
No 356
>KOG4234 consensus TPR repeat-containing protein [General function prediction only]
Probab=68.97 E-value=39 Score=31.67 Aligned_cols=61 Identities=20% Similarity=0.088 Sum_probs=35.1
Q ss_pred HHHHhhcCCHHHHHHHHHhCcCCCCHHHHHHH---HHHHHhcCChhHHHHHHHHHhccCCCCCcc
Q 003584 581 IDLLGRSGKLIEAKALLDQMVGEPDATVWKAL---LSACRVHGDLELGERAANNLFELEPMNAMP 642 (809)
Q Consensus 581 i~~~~~~g~~~eA~~~~~~m~~~p~~~~~~~l---l~a~~~~g~~~~A~~~~~~~~~~~p~~~~~ 642 (809)
..++.+.+.++.|++--.+.. +-++.--.+| ..+|.+...++.|++-|+++++++|....+
T Consensus 141 aaa~iKl~k~e~aI~dcsKai-el~pty~kAl~RRAeayek~ek~eealeDyKki~E~dPs~~ea 204 (271)
T KOG4234|consen 141 AAALIKLRKWESAIEDCSKAI-ELNPTYEKALERRAEAYEKMEKYEEALEDYKKILESDPSRREA 204 (271)
T ss_pred HHHHHHhhhHHHHHHHHHhhH-hcCchhHHHHHHHHHHHHhhhhHHHHHHHHHHHHHhCcchHHH
Confidence 344555555555555544443 2222212222 335666677888888888888888865433
No 357
>PRK15180 Vi polysaccharide biosynthesis protein TviD; Provisional
Probab=68.78 E-value=31 Score=36.67 Aligned_cols=129 Identities=13% Similarity=0.008 Sum_probs=80.3
Q ss_pred HhcCCHHHH-HHHHHhcC----CCCeeechHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCCHHHH
Q 003584 483 AKCGCINDA-NRVFDSMH----TRDVITWTALIMGCAQNGKGKEALQFYDQMLARGTKPDYITFVGLLFACSHAGLAENA 557 (809)
Q Consensus 483 ~k~g~~~~A-~~~~~~~~----~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~pd~~t~~~ll~a~~~~g~~~~a 557 (809)
...|++..| .++|+.+. .|+.+... ...+...|+++.++..+...... +-....|...++......|++++|
T Consensus 300 ~~~gd~~aas~~~~~~lr~~~~~p~~i~l~--~~i~~~lg~ye~~~~~~s~~~~~-~~s~~~~~~~~~r~~~~l~r~~~a 376 (831)
T PRK15180 300 LADGDIIAASQQLFAALRNQQQDPVLIQLR--SVIFSHLGYYEQAYQDISDVEKI-IGTTDSTLRCRLRSLHGLARWREA 376 (831)
T ss_pred hhccCHHHHHHHHHHHHHhCCCCchhhHHH--HHHHHHhhhHHHHHHHhhchhhh-hcCCchHHHHHHHhhhchhhHHHH
Confidence 345776655 44555444 23433333 33456789999999888766543 445567888889999999999999
Q ss_pred HHHHHHhHHhhCCCCChHHHHHHHHHHhhcCCHHHHHHHHHhCcC--CCCHHHHHHHHHHH
Q 003584 558 RWYFESMDKVYGIKPGPDHYACMIDLLGRSGKLIEAKALLDQMVG--EPDATVWKALLSAC 616 (809)
Q Consensus 558 ~~~~~~m~~~~~~~p~~~~~~~li~~~~~~g~~~eA~~~~~~m~~--~p~~~~~~~ll~a~ 616 (809)
...-+.|... .++ +.+....-...--..|-++++.-.+++... +|...-|-.+++.-
T Consensus 377 ~s~a~~~l~~-eie-~~ei~~iaa~sa~~l~~~d~~~~~wk~~~~~~~~~~~g~v~~~~~~ 435 (831)
T PRK15180 377 LSTAEMMLSN-EIE-DEEVLTVAAGSADALQLFDKSYHYWKRVLLLNPETQSGWVNFLSST 435 (831)
T ss_pred HHHHHHHhcc-ccC-ChhheeeecccHHHHhHHHHHHHHHHHHhccCChhcccceeeeccc
Confidence 9988877754 333 222222112222345778888888887653 45555676666543
No 358
>PF13181 TPR_8: Tetratricopeptide repeat; PDB: 3GW4_B 3MA5_C 2KCV_A 2KCL_A 3FP3_A 3LCA_A 3FP4_A 3FP2_A 1W3B_B 1ELW_A ....
Probab=68.67 E-value=7.6 Score=24.21 Aligned_cols=28 Identities=21% Similarity=0.376 Sum_probs=24.9
Q ss_pred ccHHhHhhhhhhcCChhHHHHHHHHHHh
Q 003584 641 MPYVQLSNMYSTAGKWEDAARVRKLMKS 668 (809)
Q Consensus 641 ~~~~~l~~~~~~~g~~~~A~~~~~~m~~ 668 (809)
.+|..++.+|...|++++|.+.+++..+
T Consensus 2 ~~~~~lg~~y~~~~~~~~A~~~~~~a~~ 29 (34)
T PF13181_consen 2 EAYYNLGKIYEQLGDYEEALEYFEKALE 29 (34)
T ss_dssp HHHHHHHHHHHHTTSHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHh
Confidence 3678899999999999999999998765
No 359
>KOG0292 consensus Vesicle coat complex COPI, alpha subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=68.15 E-value=11 Score=43.03 Aligned_cols=118 Identities=20% Similarity=0.272 Sum_probs=78.6
Q ss_pred cCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHhHHhhCCCCChHHHHHHHHHHhhcCCHHHHHH
Q 003584 516 NGKGKEALQFYDQMLARGTKPDYITFVGLLFACSHAGLAENARWYFESMDKVYGIKPGPDHYACMIDLLGRSGKLIEAKA 595 (809)
Q Consensus 516 ~g~~~~A~~l~~~m~~~g~~pd~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~~~~~~~li~~~~~~g~~~eA~~ 595 (809)
+.++++.+.+.+...--| .++|.-+.+.|-.+-|+.+.+.=..+ .++...+|+++.|++
T Consensus 606 ~k~ydeVl~lI~ns~LvG--------qaiIaYLqKkgypeiAL~FVkD~~tR-------------F~LaLe~gnle~ale 664 (1202)
T KOG0292|consen 606 NKKYDEVLHLIKNSNLVG--------QAIIAYLQKKGYPEIALHFVKDERTR-------------FELALECGNLEVALE 664 (1202)
T ss_pred hhhhHHHHHHHHhcCccc--------HHHHHHHHhcCCcceeeeeecCcchh-------------eeeehhcCCHHHHHH
Confidence 456666665554432222 23445556777777777766433322 234557899999999
Q ss_pred HHHhCcCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHhccCCCCCccHHhHhhhhhhcCChhHHHHHHHH
Q 003584 596 LLDQMVGEPDATVWKALLSACRVHGDLELGERAANNLFELEPMNAMPYVQLSNMYSTAGKWEDAARVRKL 665 (809)
Q Consensus 596 ~~~~m~~~p~~~~~~~ll~a~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~ 665 (809)
.-.+.- |..+|..|+.....+||.+.|+..|++... +..|+.+|.-.|+.++-.++.+.
T Consensus 665 ~akkld---d~d~w~rLge~Al~qgn~~IaEm~yQ~~kn--------fekLsfLYliTgn~eKL~Km~~i 723 (1202)
T KOG0292|consen 665 AAKKLD---DKDVWERLGEEALRQGNHQIAEMCYQRTKN--------FEKLSFLYLITGNLEKLSKMMKI 723 (1202)
T ss_pred HHHhcC---cHHHHHHHHHHHHHhcchHHHHHHHHHhhh--------hhheeEEEEEeCCHHHHHHHHHH
Confidence 887764 778999999999999999999999986533 44556666667776655444433
No 360
>PF11207 DUF2989: Protein of unknown function (DUF2989); InterPro: IPR021372 Some members in this bacterial family of proteins are annotated as lipoproteins however this cannot be confirmed.
Probab=68.05 E-value=20 Score=33.80 Aligned_cols=75 Identities=23% Similarity=0.244 Sum_probs=49.5
Q ss_pred hhcCCHHHHHHHHHhCcCCC--CHHHHHHHHHHHHhcCChhHHHHHHHHHhccCC----CCCccHHhHhhhhhhcCChhH
Q 003584 585 GRSGKLIEAKALLDQMVGEP--DATVWKALLSACRVHGDLELGERAANNLFELEP----MNAMPYVQLSNMYSTAGKWED 658 (809)
Q Consensus 585 ~~~g~~~eA~~~~~~m~~~p--~~~~~~~ll~a~~~~g~~~~A~~~~~~~~~~~p----~~~~~~~~l~~~~~~~g~~~~ 658 (809)
.|.|+ ++|...|-.+...| +....-.-+..|....|.+.++.++.+++++.+ -|+..+..|+.+|.+.|+++.
T Consensus 118 sr~~d-~~A~~~fL~~E~~~~l~t~elq~aLAtyY~krD~~Kt~~ll~~~L~l~~~~~~~n~eil~sLas~~~~~~~~e~ 196 (203)
T PF11207_consen 118 SRFGD-QEALRRFLQLEGTPELETAELQYALATYYTKRDPEKTIQLLLRALELSNPDDNFNPEILKSLASIYQKLKNYEQ 196 (203)
T ss_pred hccCc-HHHHHHHHHHcCCCCCCCHHHHHHHHHHHHccCHHHHHHHHHHHHHhcCCCCCCCHHHHHHHHHHHHHhcchhh
Confidence 34444 45666666665433 233333344555557788888888888887642 257788889999999998888
Q ss_pred HH
Q 003584 659 AA 660 (809)
Q Consensus 659 A~ 660 (809)
|.
T Consensus 197 AY 198 (203)
T PF11207_consen 197 AY 198 (203)
T ss_pred hh
Confidence 74
No 361
>COG4455 ImpE Protein of avirulence locus involved in temperature-dependent protein secretion [General function prediction only]
Probab=67.73 E-value=16 Score=34.66 Aligned_cols=63 Identities=25% Similarity=0.188 Sum_probs=47.9
Q ss_pred HHHHHHHhhcCCHHHHHHHHHhC-cCCC-CHHHHHHHHHHHHhcCChhHHHHHHHHHhccCCCCC
Q 003584 578 ACMIDLLGRSGKLIEAKALLDQM-VGEP-DATVWKALLSACRVHGDLELGERAANNLFELEPMNA 640 (809)
Q Consensus 578 ~~li~~~~~~g~~~eA~~~~~~m-~~~p-~~~~~~~ll~a~~~~g~~~~A~~~~~~~~~~~p~~~ 640 (809)
..-+..+.+.+++++|+...+.- ..+| |...-..|+..++..|+++.|..-++-+-++.|++.
T Consensus 5 ~~t~seLL~~~sL~dai~~a~~qVkakPtda~~RhflfqLlcvaGdw~kAl~Ql~l~a~l~p~~t 69 (273)
T COG4455 5 RDTISELLDDNSLQDAIGLARDQVKAKPTDAGGRHFLFQLLCVAGDWEKALAQLNLAATLSPQDT 69 (273)
T ss_pred HHHHHHHHHhccHHHHHHHHHHHHhcCCccccchhHHHHHHhhcchHHHHHHHHHHHhhcCcccc
Confidence 34456777888999998876543 3345 455777788889999999999988888888888754
No 362
>KOG0545 consensus Aryl-hydrocarbon receptor-interacting protein [Posttranslational modification, protein turnover, chaperones]
Probab=67.49 E-value=44 Score=32.44 Aligned_cols=56 Identities=7% Similarity=-0.027 Sum_probs=47.5
Q ss_pred HHHHhcCChhHHHHHHHHHhccCCCCCccHHhHhhhhhhcCChhHHHHHHHHHHhC
Q 003584 614 SACRVHGDLELGERAANNLFELEPMNAMPYVQLSNMYSTAGKWEDAARVRKLMKSR 669 (809)
Q Consensus 614 ~a~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~ 669 (809)
..+...|++-++++.....+..+|.|..+|..-+.+.+..=+..+|..-+....+.
T Consensus 238 QC~L~~~e~yevleh~seiL~~~~~nvKA~frRakAhaa~Wn~~eA~~D~~~vL~l 293 (329)
T KOG0545|consen 238 QCLLKKEEYYEVLEHCSEILRHHPGNVKAYFRRAKAHAAVWNEAEAKADLQKVLEL 293 (329)
T ss_pred HHHhhHHHHHHHHHHHHHHHhcCCchHHHHHHHHHHHHhhcCHHHHHHHHHHHHhc
Confidence 44557789999999999999999999999999998888888888888888877654
No 363
>KOG1498 consensus 26S proteasome regulatory complex, subunit RPN5/PSMD12 [Posttranslational modification, protein turnover, chaperones]
Probab=67.46 E-value=1.7e+02 Score=30.77 Aligned_cols=193 Identities=13% Similarity=0.159 Sum_probs=114.2
Q ss_pred ChhHHhHHHHHHHhcCCHHHHHHHHHhcCCCCeeechHHHHHHHhcCChHHHHHH--HHHHHHCCCCCCHHHHHHHHHHH
Q 003584 471 SLSVDNSLVLVYAKCGCINDANRVFDSMHTRDVITWTALIMGCAQNGKGKEALQF--YDQMLARGTKPDYITFVGLLFAC 548 (809)
Q Consensus 471 ~~~~~~~li~~y~k~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~l--~~~m~~~g~~pd~~t~~~ll~a~ 548 (809)
+..+...+++++...++|+.--+.. ....-++|+...|+.- .+-|.-..-.||..|-..++..+
T Consensus 51 ~~kv~~~i~~lc~~~~~w~~Lne~i--------------~~Lskkrgqlk~ai~~Mvq~~~~y~~~~~d~~~k~~li~tL 116 (439)
T KOG1498|consen 51 NTKVLEEIMKLCFSAKDWDLLNEQI--------------RLLSKKRGQLKQAIQSMVQQAMTYIDGTPDLETKIKLIETL 116 (439)
T ss_pred HHHHHHHHHHHHhccccHHHHHHHH--------------HHHHHHhhHHHHHHHHHHHHHHHhccCCCCchhHHHHHHHH
Confidence 3444455566666666665432222 1123356777776652 22232222356666666666543
Q ss_pred HccCCHHHHHHHHHHhHHhhCCCCChHHHHHHHHHHhhcCCHHHHHHHHHhCcCCCCHHHHHHH------------HHHH
Q 003584 549 SHAGLAENARWYFESMDKVYGIKPGPDHYACMIDLLGRSGKLIEAKALLDQMVGEPDATVWKAL------------LSAC 616 (809)
Q Consensus 549 ~~~g~~~~a~~~~~~m~~~~~~~p~~~~~~~li~~~~~~g~~~eA~~~~~~m~~~p~~~~~~~l------------l~a~ 616 (809)
... .++. +|-+.. ....-..|...+-.+|++++|.+++.+.+. .||+++ +..|
T Consensus 117 r~V---tegk-IyvEvE-------RarlTk~L~~ike~~Gdi~~Aa~il~el~V----ETygsm~~~ekV~fiLEQmrKO 181 (439)
T KOG1498|consen 117 RTV---TEGK-IYVEVE-------RARLTKMLAKIKEEQGDIAEAADILCELQV----ETYGSMEKSEKVAFILEQMRLC 181 (439)
T ss_pred HHh---hcCc-eEEeeh-------HHHHHHHHHHHHHHcCCHHHHHHHHHhcch----hhhhhhHHHHHHHHHHHHHHHH
Confidence 221 1111 110000 112223466778889999999999988773 233332 4667
Q ss_pred HhcCChhHHHHHHHHHhcc---CCC----CCccHHhHhhhhhhcCChhHHHHHHHHHHhCCCccCCceeEEEECCEEEEE
Q 003584 617 RVHGDLELGERAANNLFEL---EPM----NAMPYVQLSNMYSTAGKWEDAARVRKLMKSRGIRKEPGCSWVETNSQVHIF 689 (809)
Q Consensus 617 ~~~g~~~~A~~~~~~~~~~---~p~----~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~s~~~~~~~~~~~ 689 (809)
...+|+-.|-.+.++.... +|+ ....|..++.+..+.+.+=++.+.++..-+-|-.+...--|+++-..+-.|
T Consensus 182 G~~~D~vra~i~skKI~~K~F~~~~~~~lKlkyY~lmI~l~lh~~~Yl~v~~~Yraiy~t~~vk~d~~kw~~vL~~iv~f 261 (439)
T KOG1498|consen 182 LLRLDYVRAQIISKKINKKFFEKPDVQELKLKYYELMIRLGLHDRAYLNVCRSYRAIYDTGNVKEDPEKWIEVLRSIVSF 261 (439)
T ss_pred HHhhhHHHHHHHHHHhhHHhcCCccHHHHHHHHHHHHHHhcccccchhhHHHHHHHHhcccccccChhhhhhhhhhheeE
Confidence 8888998888887776442 232 123688999999999999999999999887766655445577766655555
Q ss_pred EeC
Q 003584 690 ISE 692 (809)
Q Consensus 690 ~~~ 692 (809)
+.-
T Consensus 262 ~~L 264 (439)
T KOG1498|consen 262 CVL 264 (439)
T ss_pred Eee
Confidence 543
No 364
>PF08631 SPO22: Meiosis protein SPO22/ZIP4 like; InterPro: IPR013940 SPO22 is a meiosis-specific protein with similarity to phospholipase A2, involved in completion of nuclear divisions during meiosis; induced early in meiosis []. It is also involved in sporulation [].
Probab=67.19 E-value=1.5e+02 Score=30.09 Aligned_cols=18 Identities=17% Similarity=0.281 Sum_probs=11.9
Q ss_pred HHHhcCChHHHHHHHHHH
Q 003584 512 GCAQNGKGKEALQFYDQM 529 (809)
Q Consensus 512 ~~~~~g~~~~A~~l~~~m 529 (809)
.+.+.+++++|.+.|+-.
T Consensus 255 ~~~~~k~y~~A~~w~~~a 272 (278)
T PF08631_consen 255 KHYKAKNYDEAIEWYELA 272 (278)
T ss_pred HHHhhcCHHHHHHHHHHH
Confidence 345667777777777643
No 365
>KOG0403 consensus Neoplastic transformation suppressor Pdcd4/MA-3, contains MA3 domain [Signal transduction mechanisms]
Probab=65.88 E-value=1.9e+02 Score=30.87 Aligned_cols=57 Identities=19% Similarity=0.296 Sum_probs=34.4
Q ss_pred HHHHHHHhcCCHHHHHHHHHhcCCC---CeeechHHHHHHHhcCChHHHHHHHHHHHHCC
Q 003584 477 SLVLVYAKCGCINDANRVFDSMHTR---DVITWTALIMGCAQNGKGKEALQFYDQMLARG 533 (809)
Q Consensus 477 ~li~~y~k~g~~~~A~~~~~~~~~~---~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g 533 (809)
.|+.-|...|++.+|...+.++.-| ..+.+.+++.+.-+.|+-..-+.++++.-.+|
T Consensus 514 ~LLeEY~~~GdisEA~~CikeLgmPfFhHEvVkkAlVm~mEkk~d~t~~ldLLk~cf~sg 573 (645)
T KOG0403|consen 514 MLLEEYELSGDISEACHCIKELGMPFFHHEVVKKALVMVMEKKGDSTMILDLLKECFKSG 573 (645)
T ss_pred HHHHHHHhccchHHHHHHHHHhCCCcchHHHHHHHHHHHHHhcCcHHHHHHHHHHHHhcC
Confidence 3555666677777777777766544 34556666666666666555555555554444
No 366
>cd00923 Cyt_c_Oxidase_Va Cytochrome c oxidase subunit Va. Cytochrome c oxidase (CcO), the terminal oxidase in the respiratory chains of eukaryotes and most bacteria, is a multi-chain transmembrane protein located in the inner membrane of mitochondria and the cell membrane of prokaryotes. It catalyzes the reduction of O2 and simultaneously pumps protons across the membrane. The number of subunits varies from three to five in bacteria and up to 13 in mammalian mitochondria. Subunits I, II, and III of mammalian CcO are encoded within the mitochondrial genome and the remaining 10 subunits are encoded within the nuclear genome. Found only in eukaryotes, subunit Va is one of three mammalian subunits that lacks a transmembrane region. Subunit Va is located on the matrix side of the membrane and binds thyroid hormone T2, releasing allosteric inhibition caused by the binding of ATP to subunit IV and allowing high turnover at elevated intramitochondrial ATP/ADP ratios.
Probab=65.81 E-value=39 Score=27.54 Aligned_cols=46 Identities=11% Similarity=0.148 Sum_probs=34.1
Q ss_pred HHHHHHHHHHHHCCCCCCcchHHHHHHHHhccCChHHHHHHHHHHH
Q 003584 217 FKAIECFRDMRVEGVESNQFTFPSILTACAAVSARDFGAQVHGCIL 262 (809)
Q Consensus 217 ~~A~~l~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~ 262 (809)
-++.+-++.+....+.|+.....+.|+||.+.+++..|.++++-+.
T Consensus 24 we~rr~mN~l~~~DlVP~P~ii~aaLrAcRRvND~alAVR~lE~vK 69 (103)
T cd00923 24 WELRRGLNNLFGYDLVPEPKVIEAALRACRRVNDFALAVRILEAIK 69 (103)
T ss_pred HHHHHHHHHHhccccCCCcHHHHHHHHHHHHhhhHHHHHHHHHHHH
Confidence 3455555666666778888888888888888888888888887665
No 367
>PF07575 Nucleopor_Nup85: Nup85 Nucleoporin; InterPro: IPR011502 This is a family of nucleoporins conserved from yeast to human. Nup85 Nucleoporin is an essential component of the nuclear pore complex (NPC) that seems to be required for NPC assembly and maintenance. As part of the NPC Nup107-160 subcomplex plays a role in RNA export and in tethering NUP98/Nup98 and NUP153 to the nucleus. The Nup107-160 complex seems to be required for spindle assembly during mitosis. NUP85 is required for membrane clustering of CCL2-activated CCR2. Seems to be involved in CCR2-mediated chemotaxis of monocytes and may link activated CCR2 to the phosphatidyl-inositol-3-kinase-Rac-lammellipodium protrusion cascade [, , ]. ; PDB: 3F3F_D 3F3P_G 3F3G_G 3EWE_B.
Probab=65.60 E-value=2.3e+02 Score=32.27 Aligned_cols=31 Identities=19% Similarity=0.262 Sum_probs=0.0
Q ss_pred cCCHHHHHHHHHHHhhcCCccCHhHHHHHHH
Q 003584 415 HGSYEEALKYFSDMRISGICPDHVVVSSILS 445 (809)
Q Consensus 415 ~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~ 445 (809)
.|++.+|.+.+-.+......|...-...+..
T Consensus 508 ~~~~~~Aa~~Lv~Ll~~~~~Pk~f~~~LL~d 538 (566)
T PF07575_consen 508 EGDFREAASLLVSLLKSPIAPKSFWPLLLCD 538 (566)
T ss_dssp -------------------------------
T ss_pred hhhHHHHHHHHHHHHCCCCCcHHHHHHHHHH
Confidence 4666777776666666666666555544444
No 368
>PHA02875 ankyrin repeat protein; Provisional
Probab=63.31 E-value=2.2e+02 Score=30.74 Aligned_cols=75 Identities=16% Similarity=-0.043 Sum_probs=41.5
Q ss_pred HhcCCChHHHHHHHHhcCCCCcc--hHHHHHHHHHccCChhHHHHHhhhCCCCCcc---hHHHHHHHHHcCCCchhHHHH
Q 003584 46 FSNSGEIDEAGQLFEKMSDRDGF--TWNTMIAAYANSGRLREAKKLFNETPFKNFF---TWSSLIYGYSNYGLDIEAFEL 120 (809)
Q Consensus 46 ~~~~~~~~~a~~~~~~~~~~~~~--~~~~li~~~~~~g~~~~A~~~f~~~~~~~~~---~~~~li~~~~~~g~~~~A~~~ 120 (809)
....|+++.+..+++.+..++.. ...+.+...++.|+.+-+..+++.-..++.. .++ .+...++.|+.+.+..+
T Consensus 9 A~~~g~~~iv~~Ll~~g~~~n~~~~~g~tpL~~A~~~~~~~~v~~Ll~~ga~~~~~~~~~~t-~L~~A~~~g~~~~v~~L 87 (413)
T PHA02875 9 AILFGELDIARRLLDIGINPNFEIYDGISPIKLAMKFRDSEAIKLLMKHGAIPDVKYPDIES-ELHDAVEEGDVKAVEEL 87 (413)
T ss_pred HHHhCCHHHHHHHHHCCCCCCccCCCCCCHHHHHHHcCCHHHHHHHHhCCCCccccCCCccc-HHHHHHHCCCHHHHHHH
Confidence 34567888888888877765532 2334455556677777666666543333321 222 33444556666554443
Q ss_pred H
Q 003584 121 F 121 (809)
Q Consensus 121 ~ 121 (809)
+
T Consensus 88 l 88 (413)
T PHA02875 88 L 88 (413)
T ss_pred H
Confidence 3
No 369
>PF04910 Tcf25: Transcriptional repressor TCF25; InterPro: IPR006994 This entry appears to represent a novel family of basic helix-loop-helix (bHLH) proteins that control differentiation and development of a variety of organs [, ]. Human Nulp1 (Q2MK75 from SWISSPROT) is a basic helix-loop-helix protein expressed broadly during early embryonic organogenesis. Over expression of human Nulp1 in COS-7 cells inhibits the transcriptional activity of serum response factor (SRF), suggesting that Nulp1 may act as a novel bHLH transcriptional repressor in the SRF signalling pathway to mediate cellular functions [].
Probab=61.97 E-value=2.1e+02 Score=30.31 Aligned_cols=64 Identities=11% Similarity=0.164 Sum_probs=49.2
Q ss_pred CHHHHHHH---HHHHHhcCChhHHHHHHHHHhccCCC-CCccHHhHhhhhh-hcCChhHHHHHHHHHHh
Q 003584 605 DATVWKAL---LSACRVHGDLELGERAANNLFELEPM-NAMPYVQLSNMYS-TAGKWEDAARVRKLMKS 668 (809)
Q Consensus 605 ~~~~~~~l---l~a~~~~g~~~~A~~~~~~~~~~~p~-~~~~~~~l~~~~~-~~g~~~~A~~~~~~m~~ 668 (809)
|...|.+| +..+.+.|-+.-|.+..+-++.++|. ||-.-...++.|+ ++++++--.++.+....
T Consensus 99 NR~fflal~r~i~~L~~RG~~rTAlE~~KlLlsLdp~~DP~g~ll~ID~~ALrs~~y~~Li~~~~~~~~ 167 (360)
T PF04910_consen 99 NRQFFLALFRYIQSLGRRGCWRTALEWCKLLLSLDPDEDPLGVLLFIDYYALRSRQYQWLIDFSESPLA 167 (360)
T ss_pred chHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHhcCCCCCcchhHHHHHHHHHhcCCHHHHHHHHHhHhh
Confidence 44555554 45678889999999999999999998 7777777777776 66788777777776554
No 370
>PF09986 DUF2225: Uncharacterized protein conserved in bacteria (DUF2225); InterPro: IPR018708 This conserved bacterial family has no known function.
Probab=61.43 E-value=29 Score=33.56 Aligned_cols=64 Identities=19% Similarity=0.180 Sum_probs=45.2
Q ss_pred HHHHHHHHHHHhcCChh-------HHHHHHHHHhccC--CC----CCccHHhHhhhhhhcCChhHHHHHHHHHHhCC
Q 003584 607 TVWKALLSACRVHGDLE-------LGERAANNLFELE--PM----NAMPYVQLSNMYSTAGKWEDAARVRKLMKSRG 670 (809)
Q Consensus 607 ~~~~~ll~a~~~~g~~~-------~A~~~~~~~~~~~--p~----~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~ 670 (809)
.++--+.+.|+..|+.+ .|.+.|+++++.+ |. .......++.++.+.|+.++|.+.|.++...+
T Consensus 119 ~l~LrlAWlyR~~~~~~~E~~fl~~Al~~y~~a~~~e~~~~~~~~~~~l~YLigeL~rrlg~~~eA~~~fs~vi~~~ 195 (214)
T PF09986_consen 119 GLCLRLAWLYRDLGDEENEKRFLRKALEFYEEAYENEDFPIEGMDEATLLYLIGELNRRLGNYDEAKRWFSRVIGSK 195 (214)
T ss_pred HHHHHHHHHhhccCCHHHHHHHHHHHHHHHHHHHHhCcCCCCCchHHHHHHHHHHHHHHhCCHHHHHHHHHHHHcCC
Confidence 35666777788888744 4555555555543 22 23456788999999999999999999987653
No 371
>KOG1258 consensus mRNA processing protein [RNA processing and modification]
Probab=61.38 E-value=2.7e+02 Score=31.07 Aligned_cols=401 Identities=12% Similarity=0.042 Sum_probs=211.5
Q ss_pred chHHHHHHHHhhhcCCChhHHHHHhhhCCC-CCCcc-cHHHHHHHHhhCCChHHHHHHHHHHHHCCCCCCcchHHHHHHH
Q 003584 167 NAFVVTGLVDMYAKCKCIFEAEYLFKMFPD-GKNHV-AWTTMITGYSQNGYGFKAIECFRDMRVEGVESNQFTFPSILTA 244 (809)
Q Consensus 167 ~~~~~~~li~~y~~~g~~~~A~~~f~~~~~-~~~~~-~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~~ 244 (809)
+...|+.||.---...+++.++.+++.+.. -|... -|-....-=.+-|..+.+.++|++-++ |++-....|...+.-
T Consensus 44 ~f~~wt~li~~~~~~~~~~~~r~~y~~fL~kyPl~~gyW~kfA~~E~klg~~~~s~~Vfergv~-aip~SvdlW~~Y~~f 122 (577)
T KOG1258|consen 44 DFDAWTTLIQENDSIEDVDALREVYDIFLSKYPLCYGYWKKFADYEYKLGNAENSVKVFERGVQ-AIPLSVDLWLSYLAF 122 (577)
T ss_pred cccchHHHHhccCchhHHHHHHHHHHHHHhhCccHHHHHHHHHHHHHHhhhHHHHHHHHHHHHH-hhhhHHHHHHHHHHH
Confidence 445667777655555556677777776654 23332 355555555678999999999999875 466566666666655
Q ss_pred Hh-ccCChHHHHHHHHHHHHh-CCC-CchhHHHHHHHHHHhCCChHHHHHHHhccCCCCeeeHHHHHHHHHh---c----
Q 003584 245 CA-AVSARDFGAQVHGCILSS-GFE-ANVYVQSALIDMYAKCGDLDSARRLLEYSEIDNEVSWNSMIVGFAR---Q---- 314 (809)
Q Consensus 245 ~~-~~~~~~~a~~~~~~~~~~-g~~-~~~~~~~~Li~~y~~~g~~~~A~~~f~~~~~~~~~~~~~li~~~~~---~---- 314 (809)
+. ..|+.+..+..|+..+.. |.. .....|...|..-..+++......+++++.+-....++..-.-|.+ .
T Consensus 123 ~~n~~~d~~~lr~~fe~A~~~vG~dF~S~~lWdkyie~en~qks~k~v~~iyeRileiP~~~~~~~f~~f~~~l~~~~~~ 202 (577)
T KOG1258|consen 123 LKNNNGDPETLRDLFERAKSYVGLDFLSDPLWDKYIEFENGQKSWKRVANIYERILEIPLHQLNRHFDRFKQLLNQNEEK 202 (577)
T ss_pred HhccCCCHHHHHHHHHHHHHhcccchhccHHHHHHHHHHhccccHHHHHHHHHHHHhhhhhHhHHHHHHHHHHHhcCChh
Confidence 54 567888888888888764 322 2345677777777788889999999988776555555544444432 2
Q ss_pred --CChhHHHHHHHHHHHC-CC---CCCcccHHHHHHHhh-cCCChHHHHHHHHHHHHhccCCchHHHHHHHHHHHhcCCH
Q 003584 315 --GFHKEALSLFKKMHAR-DI---KIDDFTYPSVLNCFA-SNIDLNNAKSVHSLIVKTGFEGYKFVNNALIDMYAKQGNL 387 (809)
Q Consensus 315 --g~~~~A~~~~~~m~~~-g~---~p~~~t~~~ll~~~~-~~~~~~~a~~i~~~~~~~g~~~~~~~~~~li~~y~~~g~~ 387 (809)
-..+++.++-...... .. .+.......-+.-.. ..+.++.+..+..... +.--.+|-+.-..
T Consensus 203 ~l~~~d~~~~l~~~~~~~~~~~~~~~~~e~~~~~v~~~~~~s~~l~~~~~~l~~~~-----------~~~~~~~~~s~~~ 271 (577)
T KOG1258|consen 203 ILLSIDELIQLRSDVAERSKITHSQEPLEELEIGVKDSTDPSKSLTEEKTILKRIV-----------SIHEKVYQKSEEE 271 (577)
T ss_pred hhcCHHHHHHHhhhHHhhhhcccccChhHHHHHHHhhccCccchhhHHHHHHHHHH-----------HHHHHHHHhhHhH
Confidence 1223333332222211 00 001111111111111 1111222222111111 1111223333444
Q ss_pred HHHHHHHhhcCC-----------CCHhHHHHHHHHHHhcCCHHHHHHHHHHHhhcCCccCHhHHHHHHHHHhcccchhHH
Q 003584 388 DCAFMVFNLMQD-----------KDVISWTSLITGCAYHGSYEEALKYFSDMRISGICPDHVVVSSILSACAELTVLEFG 456 (809)
Q Consensus 388 ~~A~~~f~~~~~-----------~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~~~~~~a 456 (809)
.+.+..|+.-.. .+..+|...+.--...|+.+.+.-+|+...-. |+.
T Consensus 272 ~~kr~~fE~~IkrpYfhvkpl~~aql~nw~~yLdf~i~~g~~~~~~~l~ercli~---------------cA~------- 329 (577)
T KOG1258|consen 272 EEKRWGFEEGIKRPYFHVKPLDQAQLKNWRYYLDFEITLGDFSRVFILFERCLIP---------------CAL------- 329 (577)
T ss_pred HHHHHhhhhhccccccccCcccHHHHHHHHHHhhhhhhcccHHHHHHHHHHHHhH---------------Hhh-------
Confidence 444555554332 24567888777777888888888777766421 100
Q ss_pred HHHHHHHHHhCCCCChhHHhHHHHHHHhcCCHHHHHHHHHhcC---CCCeeechHHHHHH-HhcCChHHHHHHHHHHHHC
Q 003584 457 QQVHAVFLKSGGCSSLSVDNSLVLVYAKCGCINDANRVFDSMH---TRDVITWTALIMGC-AQNGKGKEALQFYDQMLAR 532 (809)
Q Consensus 457 ~~~~~~~~~~g~~~~~~~~~~li~~y~k~g~~~~A~~~~~~~~---~~~~~~~~~li~~~-~~~g~~~~A~~l~~~m~~~ 532 (809)
-...|--.+.-....|+.+-|..++.... .|+...-..+-.++ -.+|++..|..+++....+
T Consensus 330 --------------Y~efWiky~~~m~~~~~~~~~~~~~~~~~~i~~k~~~~i~L~~a~f~e~~~n~~~A~~~lq~i~~e 395 (577)
T KOG1258|consen 330 --------------YDEFWIKYARWMESSGDVSLANNVLARACKIHVKKTPIIHLLEARFEESNGNFDDAKVILQRIESE 395 (577)
T ss_pred --------------hHHHHHHHHHHHHHcCchhHHHHHHHhhhhhcCCCCcHHHHHHHHHHHhhccHHHHHHHHHHHHhh
Confidence 00011111111222255555554444332 22222112222222 2467888888888888876
Q ss_pred CCCCCHHH-HHHHHHHHHccCCHHHHHH---HHHHhHHhhCCCCChHHHHHHHHH-----HhhcCCHHHHHHHHHhCcC-
Q 003584 533 GTKPDYIT-FVGLLFACSHAGLAENARW---YFESMDKVYGIKPGPDHYACMIDL-----LGRSGKLIEAKALLDQMVG- 602 (809)
Q Consensus 533 g~~pd~~t-~~~ll~a~~~~g~~~~a~~---~~~~m~~~~~~~p~~~~~~~li~~-----~~~~g~~~eA~~~~~~m~~- 602 (809)
. |+.+- -..-+....+.|..+.+.. ++..... ..-+......+.-- +.-.++.+.|..++.++..
T Consensus 396 -~-pg~v~~~l~~~~~e~r~~~~~~~~~~~~l~s~~~~---~~~~~~i~~~l~~~~~r~~~~i~~d~~~a~~~l~~~~~~ 470 (577)
T KOG1258|consen 396 -Y-PGLVEVVLRKINWERRKGNLEDANYKNELYSSIYE---GKENNGILEKLYVKFARLRYKIREDADLARIILLEANDI 470 (577)
T ss_pred -C-CchhhhHHHHHhHHHHhcchhhhhHHHHHHHHhcc---cccCcchhHHHHHHHHHHHHHHhcCHHHHHHHHHHhhhc
Confidence 3 66542 2233444556677776663 3222211 11122222222211 2336788999999998885
Q ss_pred -CCCHHHHHHHHHHHHhcC
Q 003584 603 -EPDATVWKALLSACRVHG 620 (809)
Q Consensus 603 -~p~~~~~~~ll~a~~~~g 620 (809)
+++...|..++.-+..++
T Consensus 471 ~~~~k~~~~~~~~~~~~~~ 489 (577)
T KOG1258|consen 471 LPDCKVLYLELIRFELIQP 489 (577)
T ss_pred CCccHHHHHHHHHHHHhCC
Confidence 467778988888887776
No 372
>PF09670 Cas_Cas02710: CRISPR-associated protein (Cas_Cas02710)
Probab=61.25 E-value=1.2e+02 Score=32.55 Aligned_cols=121 Identities=13% Similarity=0.018 Sum_probs=61.3
Q ss_pred HHhcCChHHHHHHHHHHHHCCCCCCHH--HHHHHHHHHHc--cCCHHHHHHHHHHhHHhhCC-CCChHHHHHHHHHHhhc
Q 003584 513 CAQNGKGKEALQFYDQMLARGTKPDYI--TFVGLLFACSH--AGLAENARWYFESMDKVYGI-KPGPDHYACMIDLLGRS 587 (809)
Q Consensus 513 ~~~~g~~~~A~~l~~~m~~~g~~pd~~--t~~~ll~a~~~--~g~~~~a~~~~~~m~~~~~~-~p~~~~~~~li~~~~~~ 587 (809)
+...+++..|.++|+++... ++++.. .+..+..+|.. .-++++|.+.++........ .-....+..++...-..
T Consensus 141 l~n~~~y~aA~~~l~~l~~r-l~~~~~~~~~~~l~~~y~~WD~fd~~~A~~~l~~~~~~~~~l~~~~~~l~~~~~~~~~~ 219 (379)
T PF09670_consen 141 LFNRYDYGAAARILEELLRR-LPGREEYQRYKDLCEGYDAWDRFDHKEALEYLEKLLKRDKALNQEREGLKELVEVLKAL 219 (379)
T ss_pred HHhcCCHHHHHHHHHHHHHh-CCchhhHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHhhhhHhHHHHHHHHHHHHHHH
Confidence 34678899999999998886 566554 34444455543 45677888888776543111 01122233333322222
Q ss_pred CCHHHHHHHHHhCcCCCCH-HHHHHHHHHHH--hcCChhHHHHHHHHHhc
Q 003584 588 GKLIEAKALLDQMVGEPDA-TVWKALLSACR--VHGDLELGERAANNLFE 634 (809)
Q Consensus 588 g~~~eA~~~~~~m~~~p~~-~~~~~ll~a~~--~~g~~~~A~~~~~~~~~ 634 (809)
..+.........-..++.. .+...+.+|-+ ..|+++.|...+-+++|
T Consensus 220 ~~~~~~~~~~~~~~~~~~~~ll~dLl~NA~RRa~~gryddAvarlYR~lE 269 (379)
T PF09670_consen 220 ESILSALEDKKQRQKKLYYALLADLLANAERRAAQGRYDDAVARLYRALE 269 (379)
T ss_pred HhhccchhhhhccccccHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHH
Confidence 2222222211111111212 23344445554 46888888765555544
No 373
>cd08819 CARD_MDA5_2 Caspase activation and recruitment domain found in MDA5, second repeat. Caspase activation and recruitment domain (CARD) found in MDA5 (melanoma-differentiation-associated gene 5), second repeat. MDA5, also known as IFIH1, contains two N-terminal CARD domains and a C-terminal RNA helicase domain. MDA5 is a cytoplasmic DEAD box RNA helicase that plays an important role in host antiviral response by sensing incoming viral RNA. Upon activation, the signal is transferred to downstream pathways via the adaptor molecule IPS-1 (MAVS, VISA, CARDIF), leading to the induction of type I interferons. Although very similar in sequence, MDA5 recognizes different sets of viruses compared to RIG-I, a related RNA helicase. MDA5 associates with IPS-1 through a CARD-CARD interaction. In general, CARDs are death domains (DDs) found associated with caspases. They are known to be important in the signaling pathways for apoptosis, inflammation, and host-defense mechanisms. DDs are protei
Probab=59.91 E-value=31 Score=27.44 Aligned_cols=63 Identities=14% Similarity=0.036 Sum_probs=43.7
Q ss_pred HHHHHHhcCCCCcchHHHHHHHHH---ccCChhHHHHHhhhCCCCCcchHHHHHHHHHcCCCchhHH
Q 003584 55 AGQLFEKMSDRDGFTWNTMIAAYA---NSGRLREAKKLFNETPFKNFFTWSSLIYGYSNYGLDIEAF 118 (809)
Q Consensus 55 a~~~~~~~~~~~~~~~~~li~~~~---~~g~~~~A~~~f~~~~~~~~~~~~~li~~~~~~g~~~~A~ 118 (809)
+..+++...+.+++|.+-.=..-+ +.|+.+.|+++++.++ +++..|...+.++-..|+-.-|.
T Consensus 21 ~~~v~d~ll~~~ilT~~d~e~I~aa~~~~g~~~~ar~LL~~L~-rg~~aF~~Fl~aLreT~~~~LA~ 86 (88)
T cd08819 21 TRDVCDKCLEQGLLTEEDRNRIEAATENHGNESGARELLKRIV-QKEGWFSKFLQALRETEHHELAR 86 (88)
T ss_pred HHHHHHHHHhcCCCCHHHHHHHHHhccccCcHHHHHHHHHHhc-cCCcHHHHHHHHHHHcCchhhhh
Confidence 344556666666666554433333 5688889999999888 88888888888888777655443
No 374
>KOG4507 consensus Uncharacterized conserved protein, contains TPR repeats [Function unknown]
Probab=59.89 E-value=18 Score=39.39 Aligned_cols=97 Identities=15% Similarity=0.070 Sum_probs=67.2
Q ss_pred ccCCHHHHHHHHHHhHHhhCCCCCh--HHHHHHHHHHhhcCCHHHHHHHHHhCcC--CCCHHHHHHHHHHHHhcCChhHH
Q 003584 550 HAGLAENARWYFESMDKVYGIKPGP--DHYACMIDLLGRSGKLIEAKALLDQMVG--EPDATVWKALLSACRVHGDLELG 625 (809)
Q Consensus 550 ~~g~~~~a~~~~~~m~~~~~~~p~~--~~~~~li~~~~~~g~~~eA~~~~~~m~~--~p~~~~~~~ll~a~~~~g~~~~A 625 (809)
..|+...|...+.... ...|.. .....|..++.+.|...+|..++.+... ...+.++-++.+++....+++.|
T Consensus 619 ~~gn~~~a~~cl~~a~---~~~p~~~~v~~v~la~~~~~~~~~~da~~~l~q~l~~~~sepl~~~~~g~~~l~l~~i~~a 695 (886)
T KOG4507|consen 619 AVGNSTFAIACLQRAL---NLAPLQQDVPLVNLANLLIHYGLHLDATKLLLQALAINSSEPLTFLSLGNAYLALKNISGA 695 (886)
T ss_pred ecCCcHHHHHHHHHHh---ccChhhhcccHHHHHHHHHHhhhhccHHHHHHHHHhhcccCchHHHhcchhHHHHhhhHHH
Confidence 4566666766665543 334422 2344566667777777778777765542 23455777888899999999999
Q ss_pred HHHHHHHhccCCCCCccHHhHhhh
Q 003584 626 ERAANNLFELEPMNAMPYVQLSNM 649 (809)
Q Consensus 626 ~~~~~~~~~~~p~~~~~~~~l~~~ 649 (809)
++.++++++++|+++..-..|..+
T Consensus 696 ~~~~~~a~~~~~~~~~~~~~l~~i 719 (886)
T KOG4507|consen 696 LEAFRQALKLTTKCPECENSLKLI 719 (886)
T ss_pred HHHHHHHHhcCCCChhhHHHHHHH
Confidence 999999999999988776665444
No 375
>PF10345 Cohesin_load: Cohesin loading factor; InterPro: IPR019440 Cohesin loading factor is a conserved protein that has been characterised in fungi. It is associated with the cohesin complex and is required in G1 for cohesin binding to chromosomes, but is dispensable in G2 when cohesion has been established. It is often referred to as Ssl3 in Schizosaccharomyces pombe (Fission yeast), and Scc4 in Saccharomyces cerevisiae (Baker's yeast). It complexes with Mis4 [].
Probab=59.16 E-value=3.3e+02 Score=31.38 Aligned_cols=44 Identities=16% Similarity=0.203 Sum_probs=23.7
Q ss_pred hcCCHHHHHHHHhhcCC-----C-----CHhHHHHHH--HHHHhcCCHHHHHHHHH
Q 003584 383 KQGNLDCAFMVFNLMQD-----K-----DVISWTSLI--TGCAYHGSYEEALKYFS 426 (809)
Q Consensus 383 ~~g~~~~A~~~f~~~~~-----~-----~~~~~~~li--~~~~~~g~~~~A~~~~~ 426 (809)
-.+++..|...++.+.+ + ....+..++ -.+...|+.+.|+..|.
T Consensus 373 ~~~~~~~a~~~l~~~~~~~~~~~~~~~~~~~~~~~yL~gl~~q~~g~l~~A~~~y~ 428 (608)
T PF10345_consen 373 IRGDWSKATQELEFMRQLCQRSPSKLYESLYPLLHYLLGLYYQSTGDLEAALYQYQ 428 (608)
T ss_pred HCcCHHHHHHHHHHHHHHHhcCccchhhhhhHHHHHHHHHHHHHcCCHHHHHHHHh
Confidence 35666666666665542 1 112222222 23344678888888886
No 376
>PRK13342 recombination factor protein RarA; Reviewed
Probab=58.43 E-value=2e+02 Score=31.25 Aligned_cols=48 Identities=19% Similarity=0.225 Sum_probs=35.1
Q ss_pred HHHHHHHHHHh---cCCHHHHHHHHHHHhhcCCccCHhHHHHHHHHHhccc
Q 003584 404 SWTSLITGCAY---HGSYEEALKYFSDMRISGICPDHVVVSSILSACAELT 451 (809)
Q Consensus 404 ~~~~li~~~~~---~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~~ 451 (809)
.+..+++++.+ .++.+.|+..+..|.+.|..|....-..+..++...|
T Consensus 229 ~~~~~isa~~ks~rgsd~~aal~~l~~~l~~G~d~~~i~rrl~~~a~edig 279 (413)
T PRK13342 229 EHYDLISALHKSIRGSDPDAALYYLARMLEAGEDPLFIARRLVIIASEDIG 279 (413)
T ss_pred HHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHhhc
Confidence 34455555555 4789999999999999998888776666666655444
No 377
>PF13929 mRNA_stabil: mRNA stabilisation
Probab=57.88 E-value=2.2e+02 Score=28.81 Aligned_cols=60 Identities=15% Similarity=0.172 Sum_probs=41.0
Q ss_pred cCCchHHHHHHHHHHHhcCCHHHHHHHHhhcCC-----CCHhHHHHHHHHHHhcCCHHHHHHHHH
Q 003584 367 FEGYKFVNNALIDMYAKQGNLDCAFMVFNLMQD-----KDVISWTSLITGCAYHGSYEEALKYFS 426 (809)
Q Consensus 367 ~~~~~~~~~~li~~y~~~g~~~~A~~~f~~~~~-----~~~~~~~~li~~~~~~g~~~~A~~~~~ 426 (809)
-.++..+....+..+++.+++.+-.++++.... .|...|..+|......|+..-...+..
T Consensus 198 ~~l~~~vi~~Il~~L~~~~dW~kl~~fW~~~~~~~~~~~D~rpW~~FI~li~~sgD~~~~~kiI~ 262 (292)
T PF13929_consen 198 KSLTRNVIISILEILAESRDWNKLFQFWEQCIPNSVPGNDPRPWAEFIKLIVESGDQEVMRKIID 262 (292)
T ss_pred cCCChhHHHHHHHHHHhcccHHHHHHHHHHhcccCCCCCCCchHHHHHHHHHHcCCHHHHHHHhh
Confidence 345556666777777777777777777766432 477788888888888888665544443
No 378
>PF04910 Tcf25: Transcriptional repressor TCF25; InterPro: IPR006994 This entry appears to represent a novel family of basic helix-loop-helix (bHLH) proteins that control differentiation and development of a variety of organs [, ]. Human Nulp1 (Q2MK75 from SWISSPROT) is a basic helix-loop-helix protein expressed broadly during early embryonic organogenesis. Over expression of human Nulp1 in COS-7 cells inhibits the transcriptional activity of serum response factor (SRF), suggesting that Nulp1 may act as a novel bHLH transcriptional repressor in the SRF signalling pathway to mediate cellular functions [].
Probab=57.26 E-value=2.6e+02 Score=29.61 Aligned_cols=89 Identities=15% Similarity=0.079 Sum_probs=54.7
Q ss_pred HHHHHccCCHHHHHHHHHHhHHhhCCCCC--hHHHHHHHHHHh-hcCCHHHHHHHHHhCcC--CCC------HHHHHHHH
Q 003584 545 LFACSHAGLAENARWYFESMDKVYGIKPG--PDHYACMIDLLG-RSGKLIEAKALLDQMVG--EPD------ATVWKALL 613 (809)
Q Consensus 545 l~a~~~~g~~~~a~~~~~~m~~~~~~~p~--~~~~~~li~~~~-~~g~~~eA~~~~~~m~~--~p~------~~~~~~ll 613 (809)
+..+.+.|.+..|.++.+-+. .+.|+ +.....+||.|+ ++++++--+++.+.... ..+ ...|+.-+
T Consensus 110 i~~L~~RG~~rTAlE~~KlLl---sLdp~~DP~g~ll~ID~~ALrs~~y~~Li~~~~~~~~~~~~~~~~~lPn~a~S~aL 186 (360)
T PF04910_consen 110 IQSLGRRGCWRTALEWCKLLL---SLDPDEDPLGVLLFIDYYALRSRQYQWLIDFSESPLAKCYRNWLSLLPNFAFSIAL 186 (360)
T ss_pred HHHHHhcCcHHHHHHHHHHHH---hcCCCCCcchhHHHHHHHHHhcCCHHHHHHHHHhHhhhhhhhhhhhCccHHHHHHH
Confidence 456778888888888887665 45554 444445667664 67777777777766443 111 12333333
Q ss_pred HHHHhcCCh---------------hHHHHHHHHHhccCC
Q 003584 614 SACRVHGDL---------------ELGERAANNLFELEP 637 (809)
Q Consensus 614 ~a~~~~g~~---------------~~A~~~~~~~~~~~p 637 (809)
|+...++. +.|...+.+++..-|
T Consensus 187 -A~~~l~~~~~~~~~~~~~~~~~~~~A~~~L~~Ai~~fP 224 (360)
T PF04910_consen 187 -AYFRLEKEESSQSSAQSGRSENSESADEALQKAILRFP 224 (360)
T ss_pred -HHHHhcCccccccccccccccchhHHHHHHHHHHHHhH
Confidence 33334444 778888888877776
No 379
>PF13762 MNE1: Mitochondrial splicing apparatus component
Probab=57.07 E-value=1.4e+02 Score=26.69 Aligned_cols=51 Identities=8% Similarity=0.210 Sum_probs=41.8
Q ss_pred CCcccHHHHHHHHhhCCC-hHHHHHHHHHHHHCCCCCCcchHHHHHHHHhcc
Q 003584 198 KNHVAWTTMITGYSQNGY-GFKAIECFRDMRVEGVESNQFTFPSILTACAAV 248 (809)
Q Consensus 198 ~~~~~~~~li~~~~~~g~-~~~A~~l~~~m~~~g~~p~~~t~~~ll~~~~~~ 248 (809)
.+-.+|++++.+..+... ---+..+|..|++.+.+++..-|..++++|.+.
T Consensus 77 ~~~ssf~~if~SlsnSsSaK~~~~~Lf~~Lk~~~~~~t~~dy~~li~~~l~g 128 (145)
T PF13762_consen 77 LDNSSFHIIFKSLSNSSSAKLTSLTLFNFLKKNDIEFTPSDYSCLIKAALRG 128 (145)
T ss_pred cccchHHHHHHHHccChHHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHcC
Confidence 566789999998877666 455788899999888899999999999988765
No 380
>PF14561 TPR_20: Tetratricopeptide repeat; PDB: 3QOU_A 2R5S_A 3QDN_B.
Probab=57.01 E-value=20 Score=29.05 Aligned_cols=43 Identities=19% Similarity=0.191 Sum_probs=26.5
Q ss_pred HHHHHHhccCCCCCccHHhHhhhhhhcCChhHHHHHHHHHHhC
Q 003584 627 RAANNLFELEPMNAMPYVQLSNMYSTAGKWEDAARVRKLMKSR 669 (809)
Q Consensus 627 ~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~ 669 (809)
..+++.++.+|+|...-..++..|...|++++|.+.+-.+...
T Consensus 9 ~al~~~~a~~P~D~~ar~~lA~~~~~~g~~e~Al~~Ll~~v~~ 51 (90)
T PF14561_consen 9 AALEAALAANPDDLDARYALADALLAAGDYEEALDQLLELVRR 51 (90)
T ss_dssp HHHHHHHHHSTT-HHHHHHHHHHHHHTT-HHHHHHHHHHHHCC
T ss_pred HHHHHHHHcCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHh
Confidence 3455556666777666667777777777777776666665544
No 381
>COG1747 Uncharacterized N-terminal domain of the transcription elongation factor GreA [Function unknown]
Probab=56.45 E-value=3e+02 Score=30.10 Aligned_cols=172 Identities=14% Similarity=0.150 Sum_probs=113.3
Q ss_pred CcccHHHHHHHHhhCCChHHHHHHHHHHHHCCCCCCcchHHHHHHHHhccCChHHHHHHHHHHHHhCCCCchhHHHHHHH
Q 003584 199 NHVAWTTMITGYSQNGYGFKAIECFRDMRVEGVESNQFTFPSILTACAAVSARDFGAQVHGCILSSGFEANVYVQSALID 278 (809)
Q Consensus 199 ~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~Li~ 278 (809)
|....-+++..+.++....-...+-.+|.+-| .+...|..+++.+... ..+.-..+++.+++..+ .|++...-|++
T Consensus 65 ~d~~l~~~~~~f~~n~k~~~veh~c~~~l~~~--e~kmal~el~q~y~en-~n~~l~~lWer~ve~df-nDvv~~ReLa~ 140 (711)
T COG1747 65 DDSCLVTLLTIFGDNHKNQIVEHLCTRVLEYG--ESKMALLELLQCYKEN-GNEQLYSLWERLVEYDF-NDVVIGRELAD 140 (711)
T ss_pred cchHHHHHHHHhccchHHHHHHHHHHHHHHhc--chHHHHHHHHHHHHhc-CchhhHHHHHHHHHhcc-hhHHHHHHHHH
Confidence 45566778888888888888888888888754 4667788888888777 55666778888887764 35555666777
Q ss_pred HHHhCCChHHHHHHHhccCCC------Ce---eeHHHHHHHHHhcCChhHHHHHHHHHHHC-CCCCCcccHHHHHHHhhc
Q 003584 279 MYAKCGDLDSARRLLEYSEID------NE---VSWNSMIVGFARQGFHKEALSLFKKMHAR-DIKIDDFTYPSVLNCFAS 348 (809)
Q Consensus 279 ~y~~~g~~~~A~~~f~~~~~~------~~---~~~~~li~~~~~~g~~~~A~~~~~~m~~~-g~~p~~~t~~~ll~~~~~ 348 (809)
.|-+ ++.+.+...|.+...+ +. ..|.-++..- ..+.+..+.+..++... |...-.+.+.-+-.-|..
T Consensus 141 ~yEk-ik~sk~a~~f~Ka~yrfI~~~q~~~i~evWeKL~~~i--~dD~D~fl~l~~kiqt~lg~~~~~Vl~qdv~~~Ys~ 217 (711)
T COG1747 141 KYEK-IKKSKAAEFFGKALYRFIPRRQNAAIKEVWEKLPELI--GDDKDFFLRLQKKIQTKLGEGRGSVLMQDVYKKYSE 217 (711)
T ss_pred HHHH-hchhhHHHHHHHHHHHhcchhhhhhHHHHHHHHHHhc--cccHHHHHHHHHHHHHhhccchHHHHHHHHHHHhcc
Confidence 7766 7888888777654321 11 1455555421 24556666666666543 444444555666677788
Q ss_pred CCChHHHHHHHHHHHHhccCCchHHHHHHH
Q 003584 349 NIDLNNAKSVHSLIVKTGFEGYKFVNNALI 378 (809)
Q Consensus 349 ~~~~~~a~~i~~~~~~~g~~~~~~~~~~li 378 (809)
..++.++.+++..+++.. ..|...-..++
T Consensus 218 ~eN~~eai~Ilk~il~~d-~k~~~ar~~~i 246 (711)
T COG1747 218 NENWTEAIRILKHILEHD-EKDVWARKEII 246 (711)
T ss_pred ccCHHHHHHHHHHHhhhc-chhhhHHHHHH
Confidence 888888888888877765 33333333333
No 382
>PRK13800 putative oxidoreductase/HEAT repeat-containing protein; Provisional
Probab=56.32 E-value=4.5e+02 Score=32.04 Aligned_cols=254 Identities=10% Similarity=-0.027 Sum_probs=133.0
Q ss_pred HHHhccCCCCeeeHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCcccHHHHHHHhhcCCChHHHHHHHHHHHHhccCCc
Q 003584 291 RLLEYSEIDNEVSWNSMIVGFARQGFHKEALSLFKKMHARDIKIDDFTYPSVLNCFASNIDLNNAKSVHSLIVKTGFEGY 370 (809)
Q Consensus 291 ~~f~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~i~~~~~~~g~~~~ 370 (809)
.+.+.+..+|...-...+..+.+.+. +++...+.+.... +|...=...+.++...+........+..+++ .+|
T Consensus 625 ~L~~~L~D~d~~VR~~Av~~L~~~~~-~~~~~~L~~aL~D---~d~~VR~~Aa~aL~~l~~~~~~~~~L~~~L~---~~d 697 (897)
T PRK13800 625 ELAPYLADPDPGVRRTAVAVLTETTP-PGFGPALVAALGD---GAAAVRRAAAEGLRELVEVLPPAPALRDHLG---SPD 697 (897)
T ss_pred HHHHHhcCCCHHHHHHHHHHHhhhcc-hhHHHHHHHHHcC---CCHHHHHHHHHHHHHHHhccCchHHHHHHhc---CCC
Confidence 44444455666555555666665554 3344444444321 2322223333333333221111122222222 245
Q ss_pred hHHHHHHHHHHHhcCCHHHHHHHHhhcCCCCHhHHHHHHHHHHhcCCHHHHHHHHHHHhhcCCccCHhHHHHHHHHHhcc
Q 003584 371 KFVNNALIDMYAKQGNLDCAFMVFNLMQDKDVISWTSLITGCAYHGSYEEALKYFSDMRISGICPDHVVVSSILSACAEL 450 (809)
Q Consensus 371 ~~~~~~li~~y~~~g~~~~A~~~f~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~ 450 (809)
..+-...++.+...+.- ....+...+.++|...-...+.++.+.+..+.. ..... .++...-.....++...
T Consensus 698 ~~VR~~A~~aL~~~~~~-~~~~l~~~L~D~d~~VR~~Av~aL~~~~~~~~l----~~~l~---D~~~~VR~~aa~aL~~~ 769 (897)
T PRK13800 698 PVVRAAALDVLRALRAG-DAALFAAALGDPDHRVRIEAVRALVSVDDVESV----AGAAT---DENREVRIAVAKGLATL 769 (897)
T ss_pred HHHHHHHHHHHHhhccC-CHHHHHHHhcCCCHHHHHHHHHHHhcccCcHHH----HHHhc---CCCHHHHHHHHHHHHHh
Confidence 56656666666544321 123445566667776666677777666554321 12221 34555555556666665
Q ss_pred cchhH-HHHHHHHHHHhCCCCChhHHhHHHHHHHhcCCHHHHH-HHHHhcCCCCeeechHHHHHHHhcCChHHHHHHHHH
Q 003584 451 TVLEF-GQQVHAVFLKSGGCSSLSVDNSLVLVYAKCGCINDAN-RVFDSMHTRDVITWTALIMGCAQNGKGKEALQFYDQ 528 (809)
Q Consensus 451 ~~~~~-a~~~~~~~~~~g~~~~~~~~~~li~~y~k~g~~~~A~-~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~l~~~ 528 (809)
+..+. +...+..+. -.++..+-.+.+..+.+.|..+.+. .+...+.++|...-...+.++...+. +++...+..
T Consensus 770 ~~~~~~~~~~L~~ll---~D~d~~VR~aA~~aLg~~g~~~~~~~~l~~aL~d~d~~VR~~Aa~aL~~l~~-~~a~~~L~~ 845 (897)
T PRK13800 770 GAGGAPAGDAVRALT---GDPDPLVRAAALAALAELGCPPDDVAAATAALRASAWQVRQGAARALAGAAA-DVAVPALVE 845 (897)
T ss_pred ccccchhHHHHHHHh---cCCCHHHHHHHHHHHHhcCCcchhHHHHHHHhcCCChHHHHHHHHHHHhccc-cchHHHHHH
Confidence 54332 223333332 2456777788888888888766553 34444556665555556666766665 456676666
Q ss_pred HHHCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHhHH
Q 003584 529 MLARGTKPDYITFVGLLFACSHAGLAENARWYFESMDK 566 (809)
Q Consensus 529 m~~~g~~pd~~t~~~ll~a~~~~g~~~~a~~~~~~m~~ 566 (809)
+.+ .|+...-...+.++........+...+....+
T Consensus 846 ~L~---D~~~~VR~~A~~aL~~~~~~~~a~~~L~~al~ 880 (897)
T PRK13800 846 ALT---DPHLDVRKAAVLALTRWPGDPAARDALTTALT 880 (897)
T ss_pred Hhc---CCCHHHHHHHHHHHhccCCCHHHHHHHHHHHh
Confidence 665 56776666777777775434456666655544
No 383
>PF09477 Type_III_YscG: Bacterial type II secretion system chaperone protein (type_III_yscG); InterPro: IPR013348 YscG is a molecular chaperone for YscE, where both are part of the type III secretion system that in Yersinia is designated Ysc (Yersinia secretion). The secretion system delivers effector proteins, designated Yops (Yersinia outer proteins), in Yersinia. This entry consists of YscG from Yersinia, and functionally equivalent type III secretion proteins in other species: e.g. AscG in Aeromonas and LscG in Photorhabdus luminescens.; GO: 0009405 pathogenesis; PDB: 3PH0_D 2UWJ_G 2P58_C.
Probab=56.16 E-value=1.2e+02 Score=25.36 Aligned_cols=86 Identities=14% Similarity=0.159 Sum_probs=51.8
Q ss_pred ChHHHHHHHHHHHHhccCCchHHHHHHHHHHHhcCCHHHHHHHHhhcCCCCHhHHHHHHHHHHhcCCHHHHHHHHHHHhh
Q 003584 351 DLNNAKSVHSLIVKTGFEGYKFVNNALIDMYAKQGNLDCAFMVFNLMQDKDVISWTSLITGCAYHGSYEEALKYFSDMRI 430 (809)
Q Consensus 351 ~~~~a~~i~~~~~~~g~~~~~~~~~~li~~y~~~g~~~~A~~~f~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~ 430 (809)
..++|..|.+.+...+- ....+--.-+..+...|++++|...=.....||...|-+|-. .+.|..+++...+.++-.
T Consensus 21 cH~EA~tIa~wL~~~~~-~~E~v~lIr~~sLmNrG~Yq~ALl~~~~~~~pdL~p~~AL~a--~klGL~~~~e~~l~rla~ 97 (116)
T PF09477_consen 21 CHQEANTIADWLEQEGE-MEEVVALIRLSSLMNRGDYQEALLLPQCHCYPDLEPWAALCA--WKLGLASALESRLTRLAS 97 (116)
T ss_dssp -HHHHHHHHHHHHHTTT-THHHHHHHHHHHHHHTT-HHHHHHHHTTS--GGGHHHHHHHH--HHCT-HHHHHHHHHHHCT
T ss_pred HHHHHHHHHHHHHhCCc-HHHHHHHHHHHHHHhhHHHHHHHHhcccCCCccHHHHHHHHH--HhhccHHHHHHHHHHHHh
Confidence 34555555555555442 233333344555778899999966555566689999987754 477888888888888877
Q ss_pred cCCccCHhHH
Q 003584 431 SGICPDHVVV 440 (809)
Q Consensus 431 ~g~~p~~~t~ 440 (809)
+| .|....|
T Consensus 98 ~g-~~~~q~F 106 (116)
T PF09477_consen 98 SG-SPELQAF 106 (116)
T ss_dssp -S-SHHHHHH
T ss_pred CC-CHHHHHH
Confidence 66 4444444
No 384
>PF02284 COX5A: Cytochrome c oxidase subunit Va; InterPro: IPR003204 Cytochrome c oxidase (1.9.3.1 from EC) is an oligomeric enzymatic complex which is a component of the respiratory chain complex and is involved in the transfer of electrons from cytochrome c to oxygen []. In eukaryotes this enzyme complex is located in the mitochondrial inner membrane; in aerobic prokaryotes it is found in the plasma membrane. In eukaryotes, in addition to the three large subunits, I, II and III, that form the catalytic centre of the enzyme complex, there are a variable number of small polypeptidic subunits. One of these subunits is known as Va.; GO: 0004129 cytochrome-c oxidase activity; PDB: 2DYR_R 3AG1_E 3ABL_E 1V54_R 2EIJ_R 1OCR_E 2DYS_E 2EIM_E 2OCC_E 3ASN_R ....
Probab=56.05 E-value=91 Score=25.81 Aligned_cols=46 Identities=11% Similarity=0.241 Sum_probs=32.5
Q ss_pred HHHHHHHHHhhcCCccCHhHHHHHHHHHhcccchhHHHHHHHHHHH
Q 003584 420 EALKYFSDMRISGICPDHVVVSSILSACAELTVLEFGQQVHAVFLK 465 (809)
Q Consensus 420 ~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~~~~~~a~~~~~~~~~ 465 (809)
+..+-+..+....+.|++....+.|.||.+.+++..|.++++.+..
T Consensus 28 e~rrglN~l~~~DlVP~P~ii~aALrAcRRvND~a~AVR~lE~iK~ 73 (108)
T PF02284_consen 28 ELRRGLNNLFGYDLVPEPKIIEAALRACRRVNDFALAVRILEGIKD 73 (108)
T ss_dssp HHHHHHHHHTTSSB---HHHHHHHHHHHHHTT-HHHHHHHHHHHHH
T ss_pred HHHHHHHHHhccccCCChHHHHHHHHHHHHhhhHHHHHHHHHHHHH
Confidence 4455556666677888888888999999988888888888887654
No 385
>PF07163 Pex26: Pex26 protein; InterPro: IPR010797 This family consists of Pex26 and related mammalian proteins. Pex26 is a type II peroxisomal membrane protein that recruits Pex6-Pex1 complexes to peroxisomes []. Mutations in Pex26 can lead to human disorders [].; GO: 0032403 protein complex binding, 0045046 protein import into peroxisome membrane, 0005779 integral to peroxisomal membrane
Probab=54.88 E-value=1.2e+02 Score=30.26 Aligned_cols=87 Identities=15% Similarity=0.083 Sum_probs=52.4
Q ss_pred HHHHHhcCChHHHHHHHHHHHH--CCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHhHHhhCCCCChHHHHHHHHHHhh-
Q 003584 510 IMGCAQNGKGKEALQFYDQMLA--RGTKPDYITFVGLLFACSHAGLAENARWYFESMDKVYGIKPGPDHYACMIDLLGR- 586 (809)
Q Consensus 510 i~~~~~~g~~~~A~~l~~~m~~--~g~~pd~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~~~~~~~li~~~~~- 586 (809)
|.+++..+++.+++...-+--+ +.++|...-... --|++.+....+.++-...... .-.-+..-|.+++.+|..
T Consensus 90 IQALAEmnrWreVLsWvlqyYq~pEklPpkIleLCI--LLysKv~Ep~amlev~~~WL~~-p~Nq~lp~y~~vaELyLl~ 166 (309)
T PF07163_consen 90 IQALAEMNRWREVLSWVLQYYQVPEKLPPKILELCI--LLYSKVQEPAAMLEVASAWLQD-PSNQSLPEYGTVAELYLLH 166 (309)
T ss_pred HHHHHHHhhHHHHHHHHHHHhcCcccCCHHHHHHHH--HHHHHhcCHHHHHHHHHHHHhC-cccCCchhhHHHHHHHHHH
Confidence 6677777888777665433332 224444433333 3477888888777777666554 222223347777766654
Q ss_pred ----cCCHHHHHHHHHh
Q 003584 587 ----SGKLIEAKALLDQ 599 (809)
Q Consensus 587 ----~g~~~eA~~~~~~ 599 (809)
.|.++||.+++..
T Consensus 167 VLlPLG~~~eAeelv~g 183 (309)
T PF07163_consen 167 VLLPLGHFSEAEELVVG 183 (309)
T ss_pred HHhccccHHHHHHHHhc
Confidence 5888888888843
No 386
>PF13762 MNE1: Mitochondrial splicing apparatus component
Probab=53.62 E-value=55 Score=29.18 Aligned_cols=81 Identities=9% Similarity=0.103 Sum_probs=60.5
Q ss_pred chHHHHHHHHHccCChhHHHHHhhhCCC---------CCcchHHHHHHHHHcCCC-chhHHHHHHHHHHcCCCCCcccHH
Q 003584 68 FTWNTMIAAYANSGRLREAKKLFNETPF---------KNFFTWSSLIYGYSNYGL-DIEAFELFWQMQLEGYRPSQYTLD 137 (809)
Q Consensus 68 ~~~~~li~~~~~~g~~~~A~~~f~~~~~---------~~~~~~~~li~~~~~~g~-~~~A~~~~~~m~~~g~~p~~~t~~ 137 (809)
...|.+++-.+.-+++.....+++.+.. .+-.+|+.++.+..+... ---+..+|.-|.+.+.+++..-|.
T Consensus 40 ~fiN~iL~hl~~~~nf~~~v~~L~~l~~l~~~~~~~~~~~ssf~~if~SlsnSsSaK~~~~~Lf~~Lk~~~~~~t~~dy~ 119 (145)
T PF13762_consen 40 IFINCILNHLASYQNFSGVVSILEHLHFLNTDNIIGWLDNSSFHIIFKSLSNSSSAKLTSLTLFNFLKKNDIEFTPSDYS 119 (145)
T ss_pred HHHHHHHHHHHHccchHHHHHHHHHHHHhhHHHHhhhcccchHHHHHHHHccChHHHHHHHHHHHHHHHcCCCCCHHHHH
Confidence 3467777777777777777777766532 345689999999877766 445778899999888889999999
Q ss_pred HHHHHhhcCCC
Q 003584 138 NVLRLCSLKGL 148 (809)
Q Consensus 138 ~ll~~~~~~~~ 148 (809)
.++++|.+...
T Consensus 120 ~li~~~l~g~~ 130 (145)
T PF13762_consen 120 CLIKAALRGYF 130 (145)
T ss_pred HHHHHHHcCCC
Confidence 99998876643
No 387
>PF11768 DUF3312: Protein of unknown function (DUF3312); InterPro: IPR024511 This is a eukaryotic family of uncharacterised proteins that contain WD40 repeats.
Probab=53.35 E-value=98 Score=34.11 Aligned_cols=23 Identities=30% Similarity=0.540 Sum_probs=19.9
Q ss_pred HHHHHHHhcCCHHHHHHHHHhcC
Q 003584 477 SLVLVYAKCGCINDANRVFDSMH 499 (809)
Q Consensus 477 ~li~~y~k~g~~~~A~~~~~~~~ 499 (809)
.|+.-|.+++++++|..++..|.
T Consensus 413 eL~~~yl~~~qi~eAi~lL~smn 435 (545)
T PF11768_consen 413 ELISQYLRCDQIEEAINLLLSMN 435 (545)
T ss_pred HHHHHHHhcCCHHHHHHHHHhCC
Confidence 46677999999999999999886
No 388
>PF09477 Type_III_YscG: Bacterial type II secretion system chaperone protein (type_III_yscG); InterPro: IPR013348 YscG is a molecular chaperone for YscE, where both are part of the type III secretion system that in Yersinia is designated Ysc (Yersinia secretion). The secretion system delivers effector proteins, designated Yops (Yersinia outer proteins), in Yersinia. This entry consists of YscG from Yersinia, and functionally equivalent type III secretion proteins in other species: e.g. AscG in Aeromonas and LscG in Photorhabdus luminescens.; GO: 0009405 pathogenesis; PDB: 3PH0_D 2UWJ_G 2P58_C.
Probab=53.09 E-value=89 Score=26.09 Aligned_cols=79 Identities=11% Similarity=0.129 Sum_probs=45.0
Q ss_pred ChHHHHHHHHHHHHhCCCCchhHHHHHHHHHHhCCChHHHHHHHhccCCCCeeeHHHHHHHHHhcCChhHHHHHHHHHHH
Q 003584 250 ARDFGAQVHGCILSSGFEANVYVQSALIDMYAKCGDLDSARRLLEYSEIDNEVSWNSMIVGFARQGFHKEALSLFKKMHA 329 (809)
Q Consensus 250 ~~~~a~~~~~~~~~~g~~~~~~~~~~Li~~y~~~g~~~~A~~~f~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~ 329 (809)
.-++|..|.+.+...+- ....+--.-+..+...|++++|...=.....||...|-+|-.+ +.|..+++...+.++..
T Consensus 21 cH~EA~tIa~wL~~~~~-~~E~v~lIr~~sLmNrG~Yq~ALl~~~~~~~pdL~p~~AL~a~--klGL~~~~e~~l~rla~ 97 (116)
T PF09477_consen 21 CHQEANTIADWLEQEGE-MEEVVALIRLSSLMNRGDYQEALLLPQCHCYPDLEPWAALCAW--KLGLASALESRLTRLAS 97 (116)
T ss_dssp -HHHHHHHHHHHHHTTT-THHHHHHHHHHHHHHTT-HHHHHHHHTTS--GGGHHHHHHHHH--HCT-HHHHHHHHHHHCT
T ss_pred HHHHHHHHHHHHHhCCc-HHHHHHHHHHHHHHhhHHHHHHHHhcccCCCccHHHHHHHHHH--hhccHHHHHHHHHHHHh
Confidence 45666666666666552 2333333444556677888888544455566788877776544 66777777777776654
Q ss_pred CC
Q 003584 330 RD 331 (809)
Q Consensus 330 ~g 331 (809)
.|
T Consensus 98 ~g 99 (116)
T PF09477_consen 98 SG 99 (116)
T ss_dssp -S
T ss_pred CC
Confidence 43
No 389
>PF10366 Vps39_1: Vacuolar sorting protein 39 domain 1; InterPro: IPR019452 This entry represents a domain found in the vacuolar sorting protein Vps39 and transforming growth factor beta receptor-associated protein Trap1. Vps39, a component of the C-Vps complex, is thought to be required for the fusion of endosomes and other types of transport intermediates with the vacuole [, ]. In Saccharomyces cerevisiae (Baker's yeast), Vps39 has been shown to stimulate nucleotide exchange []. Trap1 plays a role in the TGF-beta/activin signaling pathway. It associates with inactive heteromeric TGF-beta and activin receptor complexes, mainly through the type II receptor, and is released upon activation of signaling [, ]. The precise function of this domain has not been characterised.
Probab=51.37 E-value=89 Score=26.33 Aligned_cols=28 Identities=25% Similarity=0.536 Sum_probs=25.4
Q ss_pred eeHHHHHHHHHhcCChhHHHHHHHHHHH
Q 003584 302 VSWNSMIVGFARQGFHKEALSLFKKMHA 329 (809)
Q Consensus 302 ~~~~~li~~~~~~g~~~~A~~~~~~m~~ 329 (809)
.-|..|+.-|...|..++|++++.+...
T Consensus 40 ~~~~eL~~lY~~kg~h~~AL~ll~~l~~ 67 (108)
T PF10366_consen 40 GKYQELVDLYQGKGLHRKALELLKKLAD 67 (108)
T ss_pred CCHHHHHHHHHccCccHHHHHHHHHHhc
Confidence 3589999999999999999999999877
No 390
>TIGR03504 FimV_Cterm FimV C-terminal domain. This protein is found at the extreme C-terminus of FimV from Pseudomonas aeruginosa, and of TspA of Neisseria meningitidis. Disruption of the former blocks twitching motility from type IV pili; Semmler, et al. suggest a role in peptidoglycan layer remodelling required by type IV fimbrial systems.
Probab=51.19 E-value=34 Score=23.29 Aligned_cols=25 Identities=16% Similarity=0.308 Sum_probs=16.2
Q ss_pred HHHHHHhcCChHHHHHHHHHHHHCC
Q 003584 509 LIMGCAQNGKGKEALQFYDQMLARG 533 (809)
Q Consensus 509 li~~~~~~g~~~~A~~l~~~m~~~g 533 (809)
+..+|...|+.+.|.+++++....|
T Consensus 5 LA~ayie~Gd~e~Ar~lL~evl~~~ 29 (44)
T TIGR03504 5 LARAYIEMGDLEGARELLEEVIEEG 29 (44)
T ss_pred HHHHHHHcCChHHHHHHHHHHHHcC
Confidence 4556666777777777777666543
No 391
>PF14427 Pput2613-deam: Pput_2613-like deaminase
Probab=50.76 E-value=42 Score=27.74 Aligned_cols=58 Identities=22% Similarity=0.138 Sum_probs=49.7
Q ss_pred hhhhhchHHHHHHHHhhCCCCCCcEEEEcccccCcchhHHHHHHhhhhceEEEEecCC
Q 003584 736 IGLAYHSEKLAVAFGLLTLPQGAPIRIFKNLRVCGDCHTAMKYISAVYLRHIILRDSN 793 (809)
Q Consensus 736 ~~~~~hse~la~~~~~~~~~~~~~~~i~kn~r~c~dch~~~k~~s~~~~r~i~~rd~~ 793 (809)
..|.-|.|.-++----.+..+|..+.|---.+-|..|..+|.-.|.-+|-.|+-++.+
T Consensus 45 ~slaTHTE~ri~~~l~~~~~~Gd~m~I~G~ypPC~~CkG~Mr~~s~~~g~~I~Y~w~~ 102 (118)
T PF14427_consen 45 SSLATHTEARITRDLPLNQVPGDRMLIDGQYPPCNSCKGKMRRASEKSGATIQYTWPN 102 (118)
T ss_pred hhhhhhhHhHHHhhcCccccCCceEEEeeecCCCchhHHHHHHhhhccCcEEEEecCC
Confidence 4577899987777666666679999999999999999999999999999999988744
No 392
>KOG2034 consensus Vacuolar sorting protein PEP3/VPS18 [Intracellular trafficking, secretion, and vesicular transport]
Probab=50.19 E-value=4.9e+02 Score=30.69 Aligned_cols=176 Identities=13% Similarity=0.114 Sum_probs=92.8
Q ss_pred HHHHHHHhcCCChHHHHHHHHhcCCCCcchHHHHHHHHHccCChhHHHHHhhhCCCCCcchHHHHHHHHHcCCCchhHHH
Q 003584 40 NRALVDFSNSGEIDEAGQLFEKMSDRDGFTWNTMIAAYANSGRLREAKKLFNETPFKNFFTWSSLIYGYSNYGLDIEAFE 119 (809)
Q Consensus 40 ~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~f~~~~~~~~~~~~~li~~~~~~g~~~~A~~ 119 (809)
+.+=+.|...|.++.|.++-+.-++.=..++-.-.+.|...+++..|-+.+.++ ..++-.+.--+....+.+ ++.
T Consensus 362 R~vWk~yLd~g~y~kAL~~ar~~p~~le~Vl~~qAdf~f~~k~y~~AA~~yA~t----~~~FEEVaLKFl~~~~~~-~L~ 436 (911)
T KOG2034|consen 362 RDVWKTYLDKGEFDKALEIARTRPDALETVLLKQADFLFQDKEYLRAAEIYAET----LSSFEEVALKFLEINQER-ALR 436 (911)
T ss_pred HHHHHHHHhcchHHHHHHhccCCHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHh----hhhHHHHHHHHHhcCCHH-HHH
Confidence 445566777888888888755442211123333345566677788888888776 334444544555555544 555
Q ss_pred HHHHHHHcCCCCCcccHHHHHHH------hhcCCCch----HHHHHHHH----H----HH-hCCCCchHHHHHHHHhhhc
Q 003584 120 LFWQMQLEGYRPSQYTLDNVLRL------CSLKGLLQ----RGEQFHGY----A----IK-TCFDLNAFVVTGLVDMYAK 180 (809)
Q Consensus 120 ~~~~m~~~g~~p~~~t~~~ll~~------~~~~~~~~----~a~~~~~~----~----~~-~g~~~~~~~~~~li~~y~~ 180 (809)
.|-.=+-..++|...+-..+|.. +.+.++++ ++..-+.. . .+ .....+.....+.......
T Consensus 437 ~~L~KKL~~lt~~dk~q~~~Lv~WLlel~L~~Ln~l~~~de~~~en~~~~~~~~~re~~~~~~~~~~~~nretv~~l~~~ 516 (911)
T KOG2034|consen 437 TFLDKKLDRLTPEDKTQRDALVTWLLELYLEQLNDLDSTDEEALENWRLEYDEVQREFSKFLVLHKDELNRETVYQLLAS 516 (911)
T ss_pred HHHHHHHhhCChHHHHHHHHHHHHHHHHHHHHHhcccccChhHHHHHHHHHHHHHHHHHHHHHhhHHhhhHHHHHHHHHH
Confidence 44333333455544433332211 11222222 22221111 1 11 1112223333444455566
Q ss_pred CCChhHHHHHhhhCCCCCCcccHHHHHHHHhhCCChHHHHHHHHHH
Q 003584 181 CKCIFEAEYLFKMFPDGKNHVAWTTMITGYSQNGYGFKAIECFRDM 226 (809)
Q Consensus 181 ~g~~~~A~~~f~~~~~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m 226 (809)
.|+.+....+-.-|.. |..++.-+.+.|.+++|++++..-
T Consensus 517 ~~~~e~ll~fA~l~~d------~~~vv~~~~q~e~yeeaLevL~~~ 556 (911)
T KOG2034|consen 517 HGRQEELLQFANLIKD------YEFVVSYWIQQENYEEALEVLLNQ 556 (911)
T ss_pred ccCHHHHHHHHHHHHH------HHHHHHHHHHHHHHHHHHHHHHhc
Confidence 6777776665555554 778888889999999999887553
No 393
>PF07720 TPR_3: Tetratricopeptide repeat; InterPro: IPR011716 This entry includes tetratricopeptide-like repeats found in the LcrH/SycD-like chaperones [].; PDB: 3KS2_O 3GZ2_A 3GZ1_A 3GYZ_A 4AM9_A 2VGX_A 2VGY_A.
Probab=49.56 E-value=33 Score=22.17 Aligned_cols=30 Identities=13% Similarity=0.018 Sum_probs=19.0
Q ss_pred HHHHHHHHHhcCChhHHHHH--HHHHhccCCC
Q 003584 609 WKALLSACRVHGDLELGERA--ANNLFELEPM 638 (809)
Q Consensus 609 ~~~ll~a~~~~g~~~~A~~~--~~~~~~~~p~ 638 (809)
|-++...+...|+.++|+.+ ++-+..++|.
T Consensus 4 ~y~~a~~~y~~~ky~~A~~~~~y~~l~~ld~~ 35 (36)
T PF07720_consen 4 LYGLAYNFYQKGKYDEAIHFFQYAFLCALDKY 35 (36)
T ss_dssp HHHHHHHHHHTT-HHHHHHHHHHHHHHHHTTT
T ss_pred HHHHHHHHHHHhhHHHHHHHHHHHHHHHhccc
Confidence 55566677777777777777 3366555554
No 394
>PF14561 TPR_20: Tetratricopeptide repeat; PDB: 3QOU_A 2R5S_A 3QDN_B.
Probab=49.23 E-value=1.2e+02 Score=24.45 Aligned_cols=62 Identities=18% Similarity=0.157 Sum_probs=38.7
Q ss_pred CHHHHHHHHHHHHhcCChhHHHHHHHHHhccCCC--CCccHHhHhhhhhhcCChh-HHHHHHHHH
Q 003584 605 DATVWKALLSACRVHGDLELGERAANNLFELEPM--NAMPYVQLSNMYSTAGKWE-DAARVRKLM 666 (809)
Q Consensus 605 ~~~~~~~ll~a~~~~g~~~~A~~~~~~~~~~~p~--~~~~~~~l~~~~~~~g~~~-~A~~~~~~m 666 (809)
|....-.+...+...|+++.|++.+-.+++.+|+ +...-..|+.++...|.-+ -+.+.+++|
T Consensus 21 D~~ar~~lA~~~~~~g~~e~Al~~Ll~~v~~dr~~~~~~ar~~ll~~f~~lg~~~plv~~~RRkL 85 (90)
T PF14561_consen 21 DLDARYALADALLAAGDYEEALDQLLELVRRDRDYEDDAARKRLLDIFELLGPGDPLVSEYRRKL 85 (90)
T ss_dssp -HHHHHHHHHHHHHTT-HHHHHHHHHHHHCC-TTCCCCHHHHHHHHHHHHH-TT-HHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCccccccHHHHHHHHHHHHcCCCChHHHHHHHHH
Confidence 4456777777888888888888888888777654 3555666777776666643 445555444
No 395
>KOG0991 consensus Replication factor C, subunit RFC2 [Replication, recombination and repair]
Probab=48.97 E-value=2.6e+02 Score=27.19 Aligned_cols=147 Identities=15% Similarity=0.243 Sum_probs=82.1
Q ss_pred HHHHHHhCCChHHHHHHHhccCCCCeeeHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCcccHHHHHHHhhcCCChHHH
Q 003584 276 LIDMYAKCGDLDSARRLLEYSEIDNEVSWNSMIVGFARQGFHKEALSLFKKMHARDIKIDDFTYPSVLNCFASNIDLNNA 355 (809)
Q Consensus 276 Li~~y~~~g~~~~A~~~f~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a 355 (809)
.+..|.+.-++.-|...++++.+|= .+-.++ --|.+..+.+---++.+-...+++.-+..-+..++ +...|+..+|
T Consensus 136 tMEiyS~ttRFalaCN~s~KIiEPI-QSRCAi-LRysklsd~qiL~Rl~~v~k~Ekv~yt~dgLeaii--fta~GDMRQa 211 (333)
T KOG0991|consen 136 TMEIYSNTTRFALACNQSEKIIEPI-QSRCAI-LRYSKLSDQQILKRLLEVAKAEKVNYTDDGLEAII--FTAQGDMRQA 211 (333)
T ss_pred HHHHHcccchhhhhhcchhhhhhhH-HhhhHh-hhhcccCHHHHHHHHHHHHHHhCCCCCcchHHHhh--hhccchHHHH
Confidence 3566777777777776666665541 111122 22333333322233333344455555555444443 3445666665
Q ss_pred HHHHHHHHHhccCCchHHHHHHHHHHHhcCCHHHHHHHHhhcCCCCHhHHHHHHHHHHhcCCHHHHHHHHHHHhhcCCcc
Q 003584 356 KSVHSLIVKTGFEGYKFVNNALIDMYAKQGNLDCAFMVFNLMQDKDVISWTSLITGCAYHGSYEEALKYFSDMRISGICP 435 (809)
Q Consensus 356 ~~i~~~~~~~g~~~~~~~~~~li~~y~~~g~~~~A~~~f~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p 435 (809)
...++.-... -| +-.+..+|.-..+|.+.....|+..+ ..+++++|.+++.++-+.|+.|
T Consensus 212 lNnLQst~~g------------------~g-~Vn~enVfKv~d~PhP~~v~~ml~~~-~~~~~~~A~~il~~lw~lgysp 271 (333)
T KOG0991|consen 212 LNNLQSTVNG------------------FG-LVNQENVFKVCDEPHPLLVKKMLQAC-LKRNIDEALKILAELWKLGYSP 271 (333)
T ss_pred HHHHHHHhcc------------------cc-ccchhhhhhccCCCChHHHHHHHHHH-HhccHHHHHHHHHHHHHcCCCH
Confidence 5444332211 11 22345667777778877777777765 4578999999999999999988
Q ss_pred CHhHHHHHHHHH
Q 003584 436 DHVVVSSILSAC 447 (809)
Q Consensus 436 ~~~t~~~ll~a~ 447 (809)
.... +++.+.+
T Consensus 272 ~Dii-~~~FRv~ 282 (333)
T KOG0991|consen 272 EDII-TTLFRVV 282 (333)
T ss_pred HHHH-HHHHHHH
Confidence 7543 3344443
No 396
>KOG1550 consensus Extracellular protein SEL-1 and related proteins [Cell wall/membrane/envelope biogenesis; Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=48.69 E-value=4.5e+02 Score=29.82 Aligned_cols=110 Identities=11% Similarity=-0.041 Sum_probs=55.0
Q ss_pred hhHHHHHhhhCCCCCCcccHHHHH----HH-HhhCCChHHHHHHHHHHHH-------CCCCCCcchHHHHHHHHhcc---
Q 003584 184 IFEAEYLFKMFPDGKNHVAWTTMI----TG-YSQNGYGFKAIECFRDMRV-------EGVESNQFTFPSILTACAAV--- 248 (809)
Q Consensus 184 ~~~A~~~f~~~~~~~~~~~~~~li----~~-~~~~g~~~~A~~l~~~m~~-------~g~~p~~~t~~~ll~~~~~~--- 248 (809)
...|.+.++......++..-..+. .+ +....+++.|+..|+...+ .| +.....-+-.+|.+.
T Consensus 228 ~~~a~~~~~~~a~~g~~~a~~~~g~~y~~G~~g~~~d~e~a~~~l~~aa~~~~~~a~~~---~~~a~~~lg~~Y~~g~~~ 304 (552)
T KOG1550|consen 228 LSEAFKYYREAAKLGHSEAQYALGICYLAGTYGVTQDLESAIEYLKLAAESFKKAATKG---LPPAQYGLGRLYLQGLGV 304 (552)
T ss_pred hhHHHHHHHHHHhhcchHHHHHHHHHHhhccccccccHHHHHHHHHHHHHHHHHHHhhc---CCccccHHHHHHhcCCCC
Confidence 455666666555423333322222 22 4556678888888877765 44 222333444444332
Q ss_pred -C-ChHHHHHHHHHHHHhCCCCchhHHHHHHHHHHh-CCChHHHHHHHhccC
Q 003584 249 -S-ARDFGAQVHGCILSSGFEANVYVQSALIDMYAK-CGDLDSARRLLEYSE 297 (809)
Q Consensus 249 -~-~~~~a~~~~~~~~~~g~~~~~~~~~~Li~~y~~-~g~~~~A~~~f~~~~ 297 (809)
. +.+.|..++....+.| .|+....-..+..... ..+...|.++|....
T Consensus 305 ~~~d~~~A~~~~~~aA~~g-~~~a~~~lg~~~~~g~~~~d~~~A~~yy~~Aa 355 (552)
T KOG1550|consen 305 EKIDYEKALKLYTKAAELG-NPDAQYLLGVLYETGTKERDYRRAFEYYSLAA 355 (552)
T ss_pred ccccHHHHHHHHHHHHhcC-CchHHHHHHHHHHcCCccccHHHHHHHHHHHH
Confidence 2 4566777777777666 3333333322222222 234556666665433
No 397
>KOG2396 consensus HAT (Half-A-TPR) repeat-containing protein [General function prediction only]
Probab=48.60 E-value=4e+02 Score=29.18 Aligned_cols=106 Identities=13% Similarity=0.095 Sum_probs=67.5
Q ss_pred HHHHHHHHhcCCCCeeec-hHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHH--ccCCHHHHHHHHHHhH
Q 003584 489 NDANRVFDSMHTRDVITW-TALIMGCAQNGKGKEALQFYDQMLARGTKPDYITFVGLLFACS--HAGLAENARWYFESMD 565 (809)
Q Consensus 489 ~~A~~~~~~~~~~~~~~~-~~li~~~~~~g~~~~A~~l~~~m~~~g~~pd~~t~~~ll~a~~--~~g~~~~a~~~~~~m~ 565 (809)
+.....+..+..++..+. +..+.-+.+.|-.++|...|..+... .+|+..-|..++.-=. .+-++.-++.+++.|.
T Consensus 445 ~~Ii~a~~s~~~~~~~tl~s~~l~~~~e~~~~~~ark~y~~l~~l-pp~sl~l~r~miq~e~~~~sc~l~~~r~~yd~a~ 523 (568)
T KOG2396|consen 445 DLIISALLSVIGADSVTLKSKYLDWAYESGGYKKARKVYKSLQEL-PPFSLDLFRKMIQFEKEQESCNLANIREYYDRAL 523 (568)
T ss_pred HHHHHHHHHhcCCceeehhHHHHHHHHHhcchHHHHHHHHHHHhC-CCccHHHHHHHHHHHhhHhhcCchHHHHHHHHHH
Confidence 334455566667777766 45667777888888999998888875 3455556666654311 1223788899999999
Q ss_pred HhhCCCCChHHHHHHHHHHhhcCCHHHHHHHH
Q 003584 566 KVYGIKPGPDHYACMIDLLGRSGKLIEAKALL 597 (809)
Q Consensus 566 ~~~~~~p~~~~~~~li~~~~~~g~~~eA~~~~ 597 (809)
..+| .++..|--....=...|..+.+-.++
T Consensus 524 ~~fg--~d~~lw~~y~~~e~~~g~~en~~~~~ 553 (568)
T KOG2396|consen 524 REFG--ADSDLWMDYMKEELPLGRPENCGQIY 553 (568)
T ss_pred HHhC--CChHHHHHHHHhhccCCCcccccHHH
Confidence 9888 55555654444434555555444443
No 398
>COG2976 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=48.42 E-value=2.4e+02 Score=26.62 Aligned_cols=88 Identities=11% Similarity=0.032 Sum_probs=52.6
Q ss_pred HhhcCCChHHHHHHHHHHHHhccCCc--hHHHHHHHHHHHhcCCHHHHHHHHhhcCCCCHhH--HHHHHHHHHhcCCHHH
Q 003584 345 CFASNIDLNNAKSVHSLIVKTGFEGY--KFVNNALIDMYAKQGNLDCAFMVFNLMQDKDVIS--WTSLITGCAYHGSYEE 420 (809)
Q Consensus 345 ~~~~~~~~~~a~~i~~~~~~~g~~~~--~~~~~~li~~y~~~g~~~~A~~~f~~~~~~~~~~--~~~li~~~~~~g~~~~ 420 (809)
.+...++++.|...+...+...-..+ ..+---|.......|.+|+|+.+++...+++-.+ -..-.+.+...|+-++
T Consensus 98 ~~ve~~~~d~A~aqL~~~l~~t~De~lk~l~~lRLArvq~q~~k~D~AL~~L~t~~~~~w~~~~~elrGDill~kg~k~~ 177 (207)
T COG2976 98 AEVEANNLDKAEAQLKQALAQTKDENLKALAALRLARVQLQQKKADAALKTLDTIKEESWAAIVAELRGDILLAKGDKQE 177 (207)
T ss_pred HHHhhccHHHHHHHHHHHHccchhHHHHHHHHHHHHHHHHHhhhHHHHHHHHhccccccHHHHHHHHhhhHHHHcCchHH
Confidence 34455555555555554443211111 1112234556677888888888888887764333 2233456788888888
Q ss_pred HHHHHHHHhhcC
Q 003584 421 ALKYFSDMRISG 432 (809)
Q Consensus 421 A~~~~~~m~~~g 432 (809)
|..-|.+..+.+
T Consensus 178 Ar~ay~kAl~~~ 189 (207)
T COG2976 178 ARAAYEKALESD 189 (207)
T ss_pred HHHHHHHHHHcc
Confidence 888888887765
No 399
>PF11838 ERAP1_C: ERAP1-like C-terminal domain; InterPro: IPR024571 This entry represents the uncharacterised C-terminal domain of zinc metallopeptidases belonging to MEROPS peptidase family M1 (aminopeptidase N, clan MA), with a single member characterised in Streptomyces lividans: aminopeptidase G []. The rest of the members of this family are identified as aminopeptidase N of the actinomycete-type. The spectrum of activity may differ somewhat from the aminopeptidase N clade of Escherichia coli and most other proteobacteria, which are well separated phylogenetically within the M1 family. ; PDB: 3MDJ_A 2YD0_A 3QNF_C 3RJO_A 1Z5H_A 3Q7J_A 1Z1W_A 3SE6_B.
Probab=48.09 E-value=3.3e+02 Score=28.09 Aligned_cols=83 Identities=22% Similarity=0.071 Sum_probs=58.5
Q ss_pred CHHHHHHHHHHhHHhhCC---CCChHHHHHHHHHHhhcCCHHHHHHHHHhCcCCCCHHHHHHHHHHHHhcCChhHHHHHH
Q 003584 553 LAENARWYFESMDKVYGI---KPGPDHYACMIDLLGRSGKLIEAKALLDQMVGEPDATVWKALLSACRVHGDLELGERAA 629 (809)
Q Consensus 553 ~~~~a~~~~~~m~~~~~~---~p~~~~~~~li~~~~~~g~~~eA~~~~~~m~~~p~~~~~~~ll~a~~~~g~~~~A~~~~ 629 (809)
-.++|.+.|+.......- ..++.....+.....+.|..++-..+++.....++......++.+.....+.+.-.+++
T Consensus 145 ~~~~a~~~~~~~~~~~~~~~~~i~~dlr~~v~~~~~~~g~~~~~~~l~~~~~~~~~~~~k~~~l~aLa~~~d~~~~~~~l 224 (324)
T PF11838_consen 145 CVAEARELFKAWLDGNDSPESSIPPDLRWAVYCAGVRNGDEEEWDFLWELYKNSTSPEEKRRLLSALACSPDPELLKRLL 224 (324)
T ss_dssp HHHHHHHHHHHHHHTTT-TTSTS-HHHHHHHHHHHTTS--HHHHHHHHHHHHTTSTHHHHHHHHHHHTT-S-HHHHHHHH
T ss_pred HHHHHHHHHHHHhcCCcccccccchHHHHHHHHHHHHHhhHhhHHHHHHHHhccCCHHHHHHHHHhhhccCCHHHHHHHH
Confidence 367888888887763111 34566667777788888887777777777666678888889999999898988888888
Q ss_pred HHHhcc
Q 003584 630 NNLFEL 635 (809)
Q Consensus 630 ~~~~~~ 635 (809)
+.++.-
T Consensus 225 ~~~l~~ 230 (324)
T PF11838_consen 225 DLLLSN 230 (324)
T ss_dssp HHHHCT
T ss_pred HHHcCC
Confidence 888874
No 400
>PF11525 CopK: Copper resistance protein K; InterPro: IPR021604 CopK is a periplasmic dimeric protein which is strongly up-regulated in the presence of copper, leading to a high periplasmic accumulation []. CopK has two different binding sites for Cu(I), each with a different affinity for the metal. Binding of the first Cu(I) ion induces a conformational change of CopK which involves dissociation of the dimeric apo-protein. Binding of a second Cu(I) further increases the plasticity of the protein. CopK has features that are common with functionally related proteins such as a structure consisting of an all-beta fold and a methionine-rich Cu(I) binding site []. ; PDB: 3N7E_B 3N7D_B 3DSP_A 3DSO_A 2K0Q_A 2KM0_A 2LEL_A.
Probab=47.72 E-value=6.7 Score=29.06 Aligned_cols=20 Identities=30% Similarity=0.494 Sum_probs=16.0
Q ss_pred eEEEEecCCccccccCCcCC
Q 003584 785 RHIILRDSNRFHHFKAGNCS 804 (809)
Q Consensus 785 r~i~~rd~~~~h~f~~g~cs 804 (809)
..|=+.|.+-.|+||||+-+
T Consensus 8 ksi~LkDGstvyiFKDGKMa 27 (73)
T PF11525_consen 8 KSIPLKDGSTVYIFKDGKMA 27 (73)
T ss_dssp EEEEBTTSEEEEEETTS-EE
T ss_pred eeEecCCCCEEEEEcCCcee
Confidence 45778999999999999853
No 401
>KOG2300 consensus Uncharacterized conserved protein [Function unknown]
Probab=47.56 E-value=4.1e+02 Score=28.97 Aligned_cols=145 Identities=18% Similarity=0.209 Sum_probs=85.5
Q ss_pred HHHHHHHHhhcCCCCH----------hHHHHHHHHHHhcCCHHHHHHHHHHHhhcC-CccC-------HhHHHHHHHH-H
Q 003584 387 LDCAFMVFNLMQDKDV----------ISWTSLITGCAYHGSYEEALKYFSDMRISG-ICPD-------HVVVSSILSA-C 447 (809)
Q Consensus 387 ~~~A~~~f~~~~~~~~----------~~~~~li~~~~~~g~~~~A~~~~~~m~~~g-~~p~-------~~t~~~ll~a-~ 447 (809)
.|+|+...++.++.|. .+...++.+-.-.|++.+|++-..+|.+-- -.|. ......++.- |
T Consensus 298 tDe~i~q~eklkq~d~~srilsm~km~~LE~iv~c~lv~~~~~~al~~i~dm~~w~~r~p~~~Llr~~~~~ih~LlGlys 377 (629)
T KOG2300|consen 298 TDEAIKQTEKLKQADLMSRILSMFKMILLEHIVMCRLVRGDYVEALEEIVDMKNWCTRFPTPLLLRAHEAQIHMLLGLYS 377 (629)
T ss_pred HHHHHHHHhhcccccchhHHHHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHhCCchHHHHHhHHHHHHHHhhHh
Confidence 4556666666665541 122233334445799999999999998631 1233 1122334443 4
Q ss_pred hcccchhHHHHHHHHHHHhCCCCChhH--HhHHHHHHHhcCCHHHHHHHHHhcCCCCeeechHH--------HHHH--Hh
Q 003584 448 AELTVLEFGQQVHAVFLKSGGCSSLSV--DNSLVLVYAKCGCINDANRVFDSMHTRDVITWTAL--------IMGC--AQ 515 (809)
Q Consensus 448 ~~~~~~~~a~~~~~~~~~~g~~~~~~~--~~~li~~y~k~g~~~~A~~~~~~~~~~~~~~~~~l--------i~~~--~~ 515 (809)
...+-.+.|+.-+..+.+.--..|... -..+.-.|.+.|+.+.-.++++.+..+|..++.+- +.|+ ..
T Consensus 378 ~sv~~~enAe~hf~~a~k~t~~~dl~a~~nlnlAi~YL~~~~~ed~y~~ld~i~p~nt~s~ssq~l~a~~~~v~glfaf~ 457 (629)
T KOG2300|consen 378 HSVNCYENAEFHFIEATKLTESIDLQAFCNLNLAISYLRIGDAEDLYKALDLIGPLNTNSLSSQRLEASILYVYGLFAFK 457 (629)
T ss_pred hhcchHHHHHHHHHHHHHhhhHHHHHHHHHHhHHHHHHHhccHHHHHHHHHhcCCCCCCcchHHHHHHHHHHHHHHHHHH
Confidence 556778888877777766443333322 23356678888888888888888887766555431 1111 24
Q ss_pred cCChHHHHHHHHHHHH
Q 003584 516 NGKGKEALQFYDQMLA 531 (809)
Q Consensus 516 ~g~~~~A~~l~~~m~~ 531 (809)
.+++.||...+.+-.+
T Consensus 458 qn~lnEaK~~l~e~Lk 473 (629)
T KOG2300|consen 458 QNDLNEAKRFLRETLK 473 (629)
T ss_pred hccHHHHHHHHHHHHh
Confidence 5677777777666554
No 402
>COG3947 Response regulator containing CheY-like receiver and SARP domains [Signal transduction mechanisms]
Probab=47.10 E-value=3.2e+02 Score=27.62 Aligned_cols=55 Identities=16% Similarity=0.059 Sum_probs=44.8
Q ss_pred HHHHHHHhhcCCHHHHHHHHHhCcC--CCCHHHHHHHHHHHHhcCChhHHHHHHHHH
Q 003584 578 ACMIDLLGRSGKLIEAKALLDQMVG--EPDATVWKALLSACRVHGDLELGERAANNL 632 (809)
Q Consensus 578 ~~li~~~~~~g~~~eA~~~~~~m~~--~p~~~~~~~ll~a~~~~g~~~~A~~~~~~~ 632 (809)
+.....|..+|.+.+|.++.++... +.+...|..|+..+...||--.+...++++
T Consensus 283 gkva~~yle~g~~neAi~l~qr~ltldpL~e~~nk~lm~~la~~gD~is~~khyery 339 (361)
T COG3947 283 GKVARAYLEAGKPNEAIQLHQRALTLDPLSEQDNKGLMASLATLGDEISAIKHYERY 339 (361)
T ss_pred HHHHHHHHHcCChHHHHHHHHHHhhcChhhhHHHHHHHHHHHHhccchhhhhHHHHH
Confidence 3445678899999999999998875 457779999999999999977777776655
No 403
>PF15469 Sec5: Exocyst complex component Sec5
Probab=46.87 E-value=2.2e+02 Score=26.64 Aligned_cols=25 Identities=16% Similarity=0.183 Sum_probs=14.9
Q ss_pred HHHHHHHccCCHHHHHHHHHHhHHh
Q 003584 543 GLLFACSHAGLAENARWYFESMDKV 567 (809)
Q Consensus 543 ~ll~a~~~~g~~~~a~~~~~~m~~~ 567 (809)
.-|.-|...|+++.+...|......
T Consensus 91 ~~L~~~i~~~dy~~~i~dY~kak~l 115 (182)
T PF15469_consen 91 SNLRECIKKGDYDQAINDYKKAKSL 115 (182)
T ss_pred HHHHHHHHcCcHHHHHHHHHHHHHH
Confidence 3445566667777776666655443
No 404
>PF10579 Rapsyn_N: Rapsyn N-terminal myristoylation and linker region; InterPro: IPR019568 Neuromuscular junction formation relies upon the clustering of acetylcholine receptors and other proteins in the muscle membrane. Rapsyn is a peripheral membrane protein that is selectively concentrated at the neuromuscular junction and is essential for the formation of synaptic acetylcholine receptor aggregates. Acetylcholine receptors fail to aggregate beneath nerve terminals in mice where rapsyn has been knocked out. The N-terminal six amino acids of rapsyn are its myristoylation site, and myristoylation is necessary for the targeting of the protein to the membrane []. ; GO: 0008270 zinc ion binding, 0033130 acetylcholine receptor binding, 0007268 synaptic transmission, 0005856 cytoskeleton, 0030054 cell junction, 0045211 postsynaptic membrane
Probab=46.44 E-value=48 Score=25.90 Aligned_cols=16 Identities=25% Similarity=0.125 Sum_probs=6.5
Q ss_pred HHHHHHhhcCCHHHHH
Q 003584 579 CMIDLLGRSGKLIEAK 594 (809)
Q Consensus 579 ~li~~~~~~g~~~eA~ 594 (809)
+|+.+|+..|++.+++
T Consensus 48 ~l~qA~~e~Gkyr~~L 63 (80)
T PF10579_consen 48 YLIQAHMEWGKYREML 63 (80)
T ss_pred HHHHHHHHHHHHHHHH
Confidence 3334444444444433
No 405
>cd00280 TRFH Telomeric Repeat binding Factor or TTAGGG Repeat binding Factor, central (dimerization) domain Homology; TRFH. Telomeres are protein/DNA complexes that make up the physical ends of eukaryotic linear chromosomes and are essential for chromosome stability, protecting the chromosome ends from degradation and end-to-end fusion. Proteins TRF1, TRF2 and Taz1 bind telomeric DNA and are also involved in recruiting interacting proteins, TIN2, and Rap1, to the telomeres. It has also been demonstrated that PARP1 associates with TRF2 and is capable of poly(ADP-ribosyl)ation of TRF2, which affects binding of TRF2 to telomeric DNA. TRF1, TRF2 and Taz1 proteins contain three functional domains: an N-terminal acidic domain, a central TRF-specific/dimerization domain, and a C-terminal DNA binding domain with a single Myb-like repeat. Homodimerization, a prerequisite to DNA binding, results in the juxtaposition of two Myb DNA binding domains.
Probab=46.05 E-value=1.3e+02 Score=27.91 Aligned_cols=28 Identities=21% Similarity=0.546 Sum_probs=19.7
Q ss_pred HHHHHhcCChhHHHHHHHHHhccCCCCCc
Q 003584 613 LSACRVHGDLELGERAANNLFELEPMNAM 641 (809)
Q Consensus 613 l~a~~~~g~~~~A~~~~~~~~~~~p~~~~ 641 (809)
+..|.+.|.+++|.+++++..+ +|++..
T Consensus 118 V~VCm~~g~Fk~A~eiLkr~~~-d~~~~~ 145 (200)
T cd00280 118 VAVCMENGEFKKAEEVLKRLFS-DPESQK 145 (200)
T ss_pred HHHHHhcCchHHHHHHHHHHhc-CCCchh
Confidence 4567777777777777777777 665543
No 406
>TIGR02710 CRISPR-associated protein, TIGR02710 family. Members of this family are found, exclusively in the vicinity of CRISPR repeats and other CRISPR-associated (cas) genes, in Methanothermobacter thermautotrophicus (Archaea), Thermus thermophilus (Deinococcus-Thermus), Chloroflexus aurantiacus (Chloroflexi), and Thermomicrobium roseum (Thermomicrobia).
Probab=45.83 E-value=3.1e+02 Score=29.09 Aligned_cols=29 Identities=14% Similarity=-0.160 Sum_probs=20.3
Q ss_pred HHHhcCChHHHHHHHHHHHHCCCCCCHHH
Q 003584 512 GCAQNGKGKEALQFYDQMLARGTKPDYIT 540 (809)
Q Consensus 512 ~~~~~g~~~~A~~l~~~m~~~g~~pd~~t 540 (809)
.+...+++..|.++|+++....++|+..+
T Consensus 139 ~l~n~~dy~aA~~~~~~L~~r~l~~~~~~ 167 (380)
T TIGR02710 139 RAINAFDYLFAHARLETLLRRLLSAVNHT 167 (380)
T ss_pred HHHHhcChHHHHHHHHHHHhcccChhhhh
Confidence 34567788888888888887755555443
No 407
>PRK10941 hypothetical protein; Provisional
Probab=45.65 E-value=74 Score=31.99 Aligned_cols=65 Identities=9% Similarity=0.011 Sum_probs=50.8
Q ss_pred HHHHHHHhhcCCHHHHHHHHHhCcC-CC-CHHHHHHHHHHHHhcCChhHHHHHHHHHhccCCCCCcc
Q 003584 578 ACMIDLLGRSGKLIEAKALLDQMVG-EP-DATVWKALLSACRVHGDLELGERAANNLFELEPMNAMP 642 (809)
Q Consensus 578 ~~li~~~~~~g~~~eA~~~~~~m~~-~p-~~~~~~~ll~a~~~~g~~~~A~~~~~~~~~~~p~~~~~ 642 (809)
+.+-..|.+.++++.|+...+.+.. .| |+.-|.--+-.|.+.|....|..-++..++..|+++.+
T Consensus 185 ~nLK~~~~~~~~~~~AL~~~e~ll~l~P~dp~e~RDRGll~~qL~c~~~A~~DL~~fl~~~P~dp~a 251 (269)
T PRK10941 185 DTLKAALMEEKQMELALRASEALLQFDPEDPYEIRDRGLIYAQLDCEHVALSDLSYFVEQCPEDPIS 251 (269)
T ss_pred HHHHHHHHHcCcHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCcHHHHHHHHHHHHhCCCchhH
Confidence 3455677888888888888887764 34 45568778888889999999999899888888887754
No 408
>cd08326 CARD_CASP9 Caspase activation and recruitment domain of Caspase-9. Caspase activation and recruitment domain (CARD) similar to that found in caspase-9 (CASP9, MCH6, APAF3), which interacts with the CARD of apoptotic protease-activating factor 1 (APAF-1). Caspases are aspartate-specific cysteine proteases with functions in apoptosis and immune signaling. Initiator caspases are the first to be activated following death- or inflammation-inducing signals. Caspase-9 is the initiator caspase associated with the intrinsic or mitochondrial pathway of apoptosis, induced by many pro-apoptotic signals. Together with APAF-1, it forms the heptameric 'apoptosome' in response to the release of cytochrome c from mitochondria. Activated caspase-9 cleaves and activates downstream effector caspases, like caspase-3, caspase-6, and caspase-7, resulting in apoptosis. In general, CARDs are death domains (DDs) associated with caspases. They are known to be important in the signaling pathways for apopt
Probab=45.53 E-value=50 Score=26.31 Aligned_cols=61 Identities=16% Similarity=0.201 Sum_probs=44.5
Q ss_pred HHHHhcCCCCcchHHHHHHHHHccCChhHHHHHhhhCCCCCcchHHHHHHHHHcCCCchhH
Q 003584 57 QLFEKMSDRDGFTWNTMIAAYANSGRLREAKKLFNETPFKNFFTWSSLIYGYSNYGLDIEA 117 (809)
Q Consensus 57 ~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~f~~~~~~~~~~~~~li~~~~~~g~~~~A 117 (809)
.+++.+.+.++.+....=...+...+.+.|.++++-++.++..+|.....++-..|...-|
T Consensus 20 ~v~~~L~~~~Vlt~~~~e~I~~~~tr~~q~~~LLd~L~~RG~~AF~~F~~aL~~~~~~~LA 80 (84)
T cd08326 20 YLWDHLLSRGVFTPDMIEEIQAAGSRRDQARQLLIDLETRGKQAFPAFLSALRETGQTDLA 80 (84)
T ss_pred HHHHHHHhcCCCCHHHHHHHHcCCCHHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCchHHH
Confidence 3455555666666665555556667788899999999999999998888888877755433
No 409
>PF11846 DUF3366: Domain of unknown function (DUF3366); InterPro: IPR021797 This domain is functionally uncharacterised. This domain is found in bacteria. This presumed domain is about 200 amino acids in length.
Probab=45.23 E-value=79 Score=29.95 Aligned_cols=34 Identities=26% Similarity=0.302 Sum_probs=17.8
Q ss_pred CCHHHHHHHHHHHHhcCChhHHHHHHHHHhccCC
Q 003584 604 PDATVWKALLSACRVHGDLELGERAANNLFELEP 637 (809)
Q Consensus 604 p~~~~~~~ll~a~~~~g~~~~A~~~~~~~~~~~p 637 (809)
|++.++..++.++...|+.++|.+..+++..+-|
T Consensus 142 P~~~~~~~~a~~l~~~G~~~eA~~~~~~~~~lyP 175 (193)
T PF11846_consen 142 PDPNVYQRYALALALLGDPEEARQWLARARRLYP 175 (193)
T ss_pred CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCC
Confidence 4555555555555555555555555555555554
No 410
>PF12968 DUF3856: Domain of Unknown Function (DUF3856); InterPro: IPR024552 This domain of unknown function is found in a small group of tetratricopeptide-like proteins, which includes the uncharacterised protein Q8KAL8 from SWISSPROT. The structure of Q8KAL8 is known and belongs to the SCOP all alpha class, TPR-like superfamily, CT2138-like family.; PDB: 2HR2_D.
Probab=45.22 E-value=1.1e+02 Score=26.26 Aligned_cols=61 Identities=16% Similarity=0.145 Sum_probs=33.0
Q ss_pred HHHHHHHHHHHHhcCChhHHHHHHHHHh-------ccCCCCCccHH----hHhhhhhhcCChhHHHHHHHHH
Q 003584 606 ATVWKALLSACRVHGDLELGERAANNLF-------ELEPMNAMPYV----QLSNMYSTAGKWEDAARVRKLM 666 (809)
Q Consensus 606 ~~~~~~ll~a~~~~g~~~~A~~~~~~~~-------~~~p~~~~~~~----~l~~~~~~~g~~~~A~~~~~~m 666 (809)
...+..|-.++...|++++++...++.+ +++.+....|. .-+.++...|+.++|.+.|+..
T Consensus 55 A~chA~Ls~A~~~Lgry~e~L~sA~~aL~YFNRRGEL~qdeGklWIaaVfsra~Al~~~Gr~~eA~~~fr~a 126 (144)
T PF12968_consen 55 AFCHAGLSGALAGLGRYDECLQSADRALRYFNRRGELHQDEGKLWIAAVFSRAVALEGLGRKEEALKEFRMA 126 (144)
T ss_dssp HHHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHHH--TTSTHHHHHHHHHHHHHHHHHHTT-HHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhhccHHHHHHHHHHHHHHHhhccccccccchhHHHHHHHHHHHHHhcCChHHHHHHHHHH
Confidence 3444455555566666655555444443 34444433333 3345667788999998888764
No 411
>PF10366 Vps39_1: Vacuolar sorting protein 39 domain 1; InterPro: IPR019452 This entry represents a domain found in the vacuolar sorting protein Vps39 and transforming growth factor beta receptor-associated protein Trap1. Vps39, a component of the C-Vps complex, is thought to be required for the fusion of endosomes and other types of transport intermediates with the vacuole [, ]. In Saccharomyces cerevisiae (Baker's yeast), Vps39 has been shown to stimulate nucleotide exchange []. Trap1 plays a role in the TGF-beta/activin signaling pathway. It associates with inactive heteromeric TGF-beta and activin receptor complexes, mainly through the type II receptor, and is released upon activation of signaling [, ]. The precise function of this domain has not been characterised.
Probab=44.51 E-value=1.7e+02 Score=24.60 Aligned_cols=27 Identities=15% Similarity=0.193 Sum_probs=24.4
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHhh
Q 003584 404 SWTSLITGCAYHGSYEEALKYFSDMRI 430 (809)
Q Consensus 404 ~~~~li~~~~~~g~~~~A~~~~~~m~~ 430 (809)
-|..|+.-|...|..++|++++.+...
T Consensus 41 ~~~eL~~lY~~kg~h~~AL~ll~~l~~ 67 (108)
T PF10366_consen 41 KYQELVDLYQGKGLHRKALELLKKLAD 67 (108)
T ss_pred CHHHHHHHHHccCccHHHHHHHHHHhc
Confidence 488899999999999999999998877
No 412
>TIGR03504 FimV_Cterm FimV C-terminal domain. This protein is found at the extreme C-terminus of FimV from Pseudomonas aeruginosa, and of TspA of Neisseria meningitidis. Disruption of the former blocks twitching motility from type IV pili; Semmler, et al. suggest a role in peptidoglycan layer remodelling required by type IV fimbrial systems.
Probab=44.37 E-value=50 Score=22.49 Aligned_cols=23 Identities=17% Similarity=0.160 Sum_probs=12.6
Q ss_pred HHHHHHhcCCHHHHHHHHHHHhh
Q 003584 408 LITGCAYHGSYEEALKYFSDMRI 430 (809)
Q Consensus 408 li~~~~~~g~~~~A~~~~~~m~~ 430 (809)
+..+|...|+.+.|.+++++...
T Consensus 5 LA~ayie~Gd~e~Ar~lL~evl~ 27 (44)
T TIGR03504 5 LARAYIEMGDLEGARELLEEVIE 27 (44)
T ss_pred HHHHHHHcCChHHHHHHHHHHHH
Confidence 34455555555555555555554
No 413
>TIGR01503 MthylAspMut_E methylaspartate mutase, E subunit. This model represents the E (epsilon) subunit of methylaspartate mutase (glutamate mutase), a cobalamin-dependent enzyme that catalyzes the first step in a pathway of glutamate fermentation.
Probab=44.21 E-value=38 Score=36.22 Aligned_cols=109 Identities=12% Similarity=0.066 Sum_probs=55.2
Q ss_pred chhHHHHHHHHHHHhCCCCChhHHhHHHHHHHhcCCHHHHHHHHHhcCCCC-------------eeechHHHHHH-----
Q 003584 452 VLEFGQQVHAVFLKSGGCSSLSVDNSLVLVYAKCGCINDANRVFDSMHTRD-------------VITWTALIMGC----- 513 (809)
Q Consensus 452 ~~~~a~~~~~~~~~~g~~~~~~~~~~li~~y~k~g~~~~A~~~~~~~~~~~-------------~~~~~~li~~~----- 513 (809)
.+++-.++++.+.+.|- +| +...-|+.|.+.+++++|..-+++-.+.+ +..-..++.+.
T Consensus 69 ~~~e~i~lL~~l~~~g~-ad--~lp~TIDSyTR~n~y~~A~~~l~~s~~~~~s~LNGfP~VnhGv~~~R~l~~~v~~PvQ 145 (480)
T TIGR01503 69 LLDEHIELLRTLQEEGG-AD--FLPSTIDAYTRQNRYDEAAVGIKESIKAGRSLLNGFPGVNHGVKGCRKVLEAVNLPLQ 145 (480)
T ss_pred cHHHHHHHHHHHHHccC-CC--ccceeeecccccccHHHHHHHHHhhhhcCcccccCCCcccccHHHHHHHHHhCCCCee
Confidence 34555555555555541 12 33445677777777777777776543211 11112222221
Q ss_pred HhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHh
Q 003584 514 AQNGKGKEALQFYDQMLARGTKPDYITFVGLLFACSHAGLAENARWYFESM 564 (809)
Q Consensus 514 ~~~g~~~~A~~l~~~m~~~g~~pd~~t~~~ll~a~~~~g~~~~a~~~~~~m 564 (809)
.+||.+ +|..+++-+...|+....--..+.---|++.=-+++++..|+.+
T Consensus 146 vRHGtp-DarlL~e~~~a~G~~a~EGG~ISYnlPYsK~vpLe~si~~Wqyv 195 (480)
T TIGR01503 146 IRHGTP-DARLLAEIILAGGFTSFEGGGISYNIPYAKNVTLEKSLEDWQYC 195 (480)
T ss_pred ccCCCC-cHHHHHHHHHHcCCCccCCCcceeccccCCCCCHHHHHHHHHHH
Confidence 244444 36677777777776544321111112344444566666666533
No 414
>PRK13342 recombination factor protein RarA; Reviewed
Probab=43.84 E-value=4.5e+02 Score=28.45 Aligned_cols=48 Identities=23% Similarity=0.330 Sum_probs=34.7
Q ss_pred echHHHHHHHh---cCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccC
Q 003584 505 TWTALIMGCAQ---NGKGKEALQFYDQMLARGTKPDYITFVGLLFACSHAG 552 (809)
Q Consensus 505 ~~~~li~~~~~---~g~~~~A~~l~~~m~~~g~~pd~~t~~~ll~a~~~~g 552 (809)
.+..+++++.+ .++.+.|+..+.+|.+.|..|..+.-..+..++...|
T Consensus 229 ~~~~~isa~~ks~rgsd~~aal~~l~~~l~~G~d~~~i~rrl~~~a~edig 279 (413)
T PRK13342 229 EHYDLISALHKSIRGSDPDAALYYLARMLEAGEDPLFIARRLVIIASEDIG 279 (413)
T ss_pred HHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHhhc
Confidence 34455666655 4789999999999999998888776666665555444
No 415
>COG4976 Predicted methyltransferase (contains TPR repeat) [General function prediction only]
Probab=43.82 E-value=39 Score=32.44 Aligned_cols=58 Identities=24% Similarity=0.340 Sum_probs=44.6
Q ss_pred HHhhcCCHHHHHHHHHhCcC--CCCHHHHHHHHHHHHhcCChhHHHHHHHHHhccCCCCC
Q 003584 583 LLGRSGKLIEAKALLDQMVG--EPDATVWKALLSACRVHGDLELGERAANNLFELEPMNA 640 (809)
Q Consensus 583 ~~~~~g~~~eA~~~~~~m~~--~p~~~~~~~ll~a~~~~g~~~~A~~~~~~~~~~~p~~~ 640 (809)
+..+.|+.+.|.+++.+... +.....|--+...-.+.|+.+.|.+.+++.++++|++.
T Consensus 4 ~~~~~~D~~aaaely~qal~lap~w~~gwfR~g~~~ekag~~daAa~a~~~~L~ldp~D~ 63 (287)
T COG4976 4 MLAESGDAEAAAELYNQALELAPEWAAGWFRLGEYTEKAGEFDAAAAAYEEVLELDPEDH 63 (287)
T ss_pred hhcccCChHHHHHHHHHHhhcCchhhhhhhhcchhhhhcccHHHHHHHHHHHHcCCcccc
Confidence 34567778888888887764 23455788888888888999999999999999888763
No 416
>KOG0551 consensus Hsp90 co-chaperone CNS1 (contains TPR repeats) [Posttranslational modification, protein turnover, chaperones]
Probab=43.78 E-value=76 Score=32.41 Aligned_cols=87 Identities=10% Similarity=0.114 Sum_probs=69.4
Q ss_pred HHHHHhhcCCHHHHHHHHHhCcC----CC--CHHHHHHHHHHHHhcCChhHHHHHHHHHhccCCCCCccHHhHhhhhhhc
Q 003584 580 MIDLLGRSGKLIEAKALLDQMVG----EP--DATVWKALLSACRVHGDLELGERAANNLFELEPMNAMPYVQLSNMYSTA 653 (809)
Q Consensus 580 li~~~~~~g~~~eA~~~~~~m~~----~p--~~~~~~~ll~a~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~ 653 (809)
=.+-|.+..++..|.+.|.+-.. .| +++.|+.-..+-...||+..|+.-..+++.++|.+...|..=+.++...
T Consensus 87 eGN~~fK~Kryk~A~~~Yt~Glk~kc~D~dlnavLY~NRAAa~~~l~NyRs~l~Dcs~al~~~P~h~Ka~~R~Akc~~eL 166 (390)
T KOG0551|consen 87 EGNEYFKEKRYKDAVESYTEGLKKKCADPDLNAVLYTNRAAAQLYLGNYRSALNDCSAALKLKPTHLKAYIRGAKCLLEL 166 (390)
T ss_pred HhHHHHHhhhHHHHHHHHHHHHhhcCCCccHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHhcCcchhhhhhhhhHHHHHH
Confidence 34567888999999999987664 23 3557888777888889999999999999999999999998888888888
Q ss_pred CChhHHHHHHHHH
Q 003584 654 GKWEDAARVRKLM 666 (809)
Q Consensus 654 g~~~~A~~~~~~m 666 (809)
.++.+|..+.+.-
T Consensus 167 e~~~~a~nw~ee~ 179 (390)
T KOG0551|consen 167 ERFAEAVNWCEEG 179 (390)
T ss_pred HHHHHHHHHHhhh
Confidence 8876666655443
No 417
>PHA02537 M terminase endonuclease subunit; Provisional
Probab=43.60 E-value=1.4e+02 Score=29.07 Aligned_cols=104 Identities=22% Similarity=0.186 Sum_probs=53.9
Q ss_pred HHhcCChHHHHHHHHHHHHCCCC-CCHH--HHHHHHHHHHccCCHHHHHHHHHHhHHhh--CCCCChHHHHHHHHHHhhc
Q 003584 513 CAQNGKGKEALQFYDQMLARGTK-PDYI--TFVGLLFACSHAGLAENARWYFESMDKVY--GIKPGPDHYACMIDLLGRS 587 (809)
Q Consensus 513 ~~~~g~~~~A~~l~~~m~~~g~~-pd~~--t~~~ll~a~~~~g~~~~a~~~~~~m~~~~--~~~p~~~~~~~li~~~~~~ 587 (809)
....|+++.|+++.+-+++.|.+ |+.. ++-+++ |.++++.....+ |-..++.....+..+-...
T Consensus 93 ~~D~Gd~~~AL~ia~yAI~~~l~~Pd~f~R~~~t~v-----------aeev~~~A~~~~~ag~~~e~~~~~~~~~l~~~~ 161 (230)
T PHA02537 93 RFDIGDFDGALEIAEYALEHGLTMPDQFRRTLANFV-----------AEEVANAALKAASAGESVEPYFLRVFLDLTTEW 161 (230)
T ss_pred eeeccCHHHHHHHHHHHHHcCCCCCccccCCchHHH-----------HHHHHHHHHHHHHcCCCCChHHHHHHHHHHhcC
Confidence 35679999999999999998854 5432 222222 222222221111 3333333222221111111
Q ss_pred CCHHHHHHHHHhCcCCCCHHHHHHHHHHHH---------hcCChhHHHHHHHHHhccCCC
Q 003584 588 GKLIEAKALLDQMVGEPDATVWKALLSACR---------VHGDLELGERAANNLFELEPM 638 (809)
Q Consensus 588 g~~~eA~~~~~~m~~~p~~~~~~~ll~a~~---------~~g~~~~A~~~~~~~~~~~p~ 638 (809)
.|+.+...-.|..+...+. ..++...|...++++++++|.
T Consensus 162 -----------dmpd~vrAKl~K~~G~~llr~~~g~~~~d~~~l~~Al~~L~rA~~l~~k 210 (230)
T PHA02537 162 -----------DMPDEVRAKLYKAAGYLLLRNEKGEPIGDAETLQLALALLQRAFQLNDK 210 (230)
T ss_pred -----------CCChHHHHHHHHHHHHHHhhcccCCCccCcccHHHHHHHHHHHHHhCCC
Confidence 2222222334555555552 345677899999999999885
No 418
>PF07163 Pex26: Pex26 protein; InterPro: IPR010797 This family consists of Pex26 and related mammalian proteins. Pex26 is a type II peroxisomal membrane protein that recruits Pex6-Pex1 complexes to peroxisomes []. Mutations in Pex26 can lead to human disorders [].; GO: 0032403 protein complex binding, 0045046 protein import into peroxisome membrane, 0005779 integral to peroxisomal membrane
Probab=43.04 E-value=2.3e+02 Score=28.43 Aligned_cols=19 Identities=21% Similarity=0.298 Sum_probs=12.2
Q ss_pred HHHHHhcCCHHHHHHHHHH
Q 003584 409 ITGCAYHGSYEEALKYFSD 427 (809)
Q Consensus 409 i~~~~~~g~~~~A~~~~~~ 427 (809)
|.+++..|++.+++...-+
T Consensus 90 IQALAEmnrWreVLsWvlq 108 (309)
T PF07163_consen 90 IQALAEMNRWREVLSWVLQ 108 (309)
T ss_pred HHHHHHHhhHHHHHHHHHH
Confidence 5667777777776665433
No 419
>PF11663 Toxin_YhaV: Toxin with endonuclease activity YhaV; InterPro: IPR021679 YhaV causes reversible bacteriostasis and is part of a toxin-antitoxin system in Escherichia coli along with PrlF. The toxicity of YhaV is counteracted by PrlF by the formation of a tight complex which binds to the promoter of the prlF-yhaV operon. In vitro, YhaV also has endonuclease activity [].
Probab=43.03 E-value=32 Score=29.95 Aligned_cols=31 Identities=29% Similarity=0.578 Sum_probs=24.3
Q ss_pred CCCchhHHHHHHHHHHcCCCCCcccHHHHHHHh
Q 003584 111 YGLDIEAFELFWQMQLEGYRPSQYTLDNVLRLC 143 (809)
Q Consensus 111 ~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~ 143 (809)
.|.-.+|..+|..|+++|-+|| .|+.||..+
T Consensus 108 ygsk~DaY~VF~kML~~G~pPd--dW~~Ll~~a 138 (140)
T PF11663_consen 108 YGSKTDAYAVFRKMLERGNPPD--DWDALLKEA 138 (140)
T ss_pred hccCCcHHHHHHHHHhCCCCCc--cHHHHHHHh
Confidence 3566789999999999999997 466666654
No 420
>KOG4077 consensus Cytochrome c oxidase, subunit Va/COX6 [Energy production and conversion]
Probab=42.87 E-value=1.7e+02 Score=25.31 Aligned_cols=59 Identities=14% Similarity=0.138 Sum_probs=45.0
Q ss_pred HHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHhHHhhCCCCChHHHHHHH
Q 003584 521 EALQFYDQMLARGTKPDYITFVGLLFACSHAGLAENARWYFESMDKVYGIKPGPDHYACMI 581 (809)
Q Consensus 521 ~A~~l~~~m~~~g~~pd~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~~~~~~~li 581 (809)
|..+-++.+....+-|+......-+.||.+.+++..|..+|+.++.+ ..+....|-.++
T Consensus 67 EvrkglN~l~~yDlVP~pkvIEaaLRA~RRvNDfa~aVRilE~iK~K--~g~~k~~Y~y~v 125 (149)
T KOG4077|consen 67 EVRKGLNNLFDYDLVPSPKVIEAALRACRRVNDFATAVRILEAIKDK--CGAQKQVYPYYV 125 (149)
T ss_pred HHHHHHHhhhccccCCChHHHHHHHHHHHHhccHHHHHHHHHHHHHh--cccHHHHHHHHH
Confidence 44555666677778999999999999999999999999999888654 333334555554
No 421
>PF13934 ELYS: Nuclear pore complex assembly
Probab=41.80 E-value=3.4e+02 Score=26.46 Aligned_cols=106 Identities=19% Similarity=0.208 Sum_probs=55.4
Q ss_pred chHHHHHHH--hcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHhHHhhCCCCChHHHHHHHHH
Q 003584 506 WTALIMGCA--QNGKGKEALQFYDQMLARGTKPDYITFVGLLFACSHAGLAENARWYFESMDKVYGIKPGPDHYACMIDL 583 (809)
Q Consensus 506 ~~~li~~~~--~~g~~~~A~~l~~~m~~~g~~pd~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~~~~~~~li~~ 583 (809)
+...+.||. .++++++|++++-.- .+.|+.. .-++.++...|+.+.|..+++.+. ..-.+......+...
T Consensus 79 ~~~~~~g~W~LD~~~~~~A~~~L~~p---s~~~~~~--~~Il~~L~~~~~~~lAL~y~~~~~---p~l~s~~~~~~~~~~ 150 (226)
T PF13934_consen 79 YIKFIQGFWLLDHGDFEEALELLSHP---SLIPWFP--DKILQALLRRGDPKLALRYLRAVG---PPLSSPEALTLYFVA 150 (226)
T ss_pred HHHHHHHHHHhChHhHHHHHHHhCCC---CCCcccH--HHHHHHHHHCCChhHHHHHHHhcC---CCCCCHHHHHHHHHH
Confidence 334455543 345566666655211 1122211 135566666677777777776542 111122223333333
Q ss_pred HhhcCCHHHHHHHHHhCcCCCCHHHHHHHHHHHHhcC
Q 003584 584 LGRSGKLIEAKALLDQMVGEPDATVWKALLSACRVHG 620 (809)
Q Consensus 584 ~~~~g~~~eA~~~~~~m~~~p~~~~~~~ll~a~~~~g 620 (809)
..+|.+.||..+.+....+-....|..++..|....
T Consensus 151 -La~~~v~EAf~~~R~~~~~~~~~l~e~l~~~~~~~~ 186 (226)
T PF13934_consen 151 -LANGLVTEAFSFQRSYPDELRRRLFEQLLEHCLEEC 186 (226)
T ss_pred -HHcCCHHHHHHHHHhCchhhhHHHHHHHHHHHHHHh
Confidence 556788888888777664323446777776666444
No 422
>smart00386 HAT HAT (Half-A-TPR) repeats. Present in several RNA-binding proteins. Structurally and sequentially thought to be similar to TPRs.
Probab=41.54 E-value=31 Score=20.81 Aligned_cols=28 Identities=18% Similarity=0.324 Sum_probs=17.8
Q ss_pred CChhHHHHHHHHHhccCCCCCccHHhHh
Q 003584 620 GDLELGERAANNLFELEPMNAMPYVQLS 647 (809)
Q Consensus 620 g~~~~A~~~~~~~~~~~p~~~~~~~~l~ 647 (809)
|+.+.|..++++++...|.++..+...+
T Consensus 1 ~~~~~~r~i~e~~l~~~~~~~~~W~~y~ 28 (33)
T smart00386 1 GDIERARKIYERALEKFPKSVELWLKYA 28 (33)
T ss_pred CcHHHHHHHHHHHHHHCCCChHHHHHHH
Confidence 4566677777777777776665555443
No 423
>KOG3824 consensus Huntingtin interacting protein HYPE [General function prediction only]
Probab=40.98 E-value=39 Score=33.83 Aligned_cols=61 Identities=16% Similarity=0.318 Sum_probs=43.2
Q ss_pred hhcCCHHHHHHHHHhCcC-CC-CHHHHHHHHHHHHhcCChhHHHHHHHHHhccCCCCCccHHh
Q 003584 585 GRSGKLIEAKALLDQMVG-EP-DATVWKALLSACRVHGDLELGERAANNLFELEPMNAMPYVQ 645 (809)
Q Consensus 585 ~~~g~~~eA~~~~~~m~~-~p-~~~~~~~ll~a~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~ 645 (809)
-+.|+.++|..+|+.... .| ++.+..-+......+++.-+|.++|-+++.+.|.+..+.+.
T Consensus 127 ~~~Gk~ekA~~lfeHAlalaP~~p~~L~e~G~f~E~~~~iv~ADq~Y~~ALtisP~nseALvn 189 (472)
T KOG3824|consen 127 RKDGKLEKAMTLFEHALALAPTNPQILIEMGQFREMHNEIVEADQCYVKALTISPGNSEALVN 189 (472)
T ss_pred HhccchHHHHHHHHHHHhcCCCCHHHHHHHhHHHHhhhhhHhhhhhhheeeeeCCCchHHHhh
Confidence 467888888888876553 34 34466666666667777888888888888888888766553
No 424
>cd02679 MIT_spastin MIT: domain contained within Microtubule Interacting and Trafficking molecules. This MIT domain sub-family is found in the AAA protein spastin, a probable ATPase involved in the assembly or function of nuclear protein complexes; spastins might also be involved in microtubule dynamics. The molecular function of the MIT domain is unclear.
Probab=40.52 E-value=27 Score=27.39 Aligned_cols=58 Identities=21% Similarity=0.260 Sum_probs=37.1
Q ss_pred CHHHHHHHHHhCcCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHhcc-C-----CCCCccHHhHhhhhhhcCChhHHHHH
Q 003584 589 KLIEAKALLDQMVGEPDATVWKALLSACRVHGDLELGERAANNLFEL-E-----PMNAMPYVQLSNMYSTAGKWEDAARV 662 (809)
Q Consensus 589 ~~~eA~~~~~~m~~~p~~~~~~~ll~a~~~~g~~~~A~~~~~~~~~~-~-----p~~~~~~~~l~~~~~~~g~~~~A~~~ 662 (809)
.++.|.+.+++.. .+-..|+.+.|+..|++.++. . |.. .....-.|++|.++
T Consensus 4 ~~~~A~~~I~kaL-------------~~dE~g~~e~Al~~Y~~gi~~l~eg~ai~~~---------~~~~~~~w~~ar~~ 61 (79)
T cd02679 4 YYKQAFEEISKAL-------------RADEWGDKEQALAHYRKGLRELEEGIAVPVP---------SAGVGSQWERARRL 61 (79)
T ss_pred HHHHHHHHHHHHh-------------hhhhcCCHHHHHHHHHHHHHHHHHHcCCCCC---------cccccHHHHHHHHH
Confidence 3566666666654 122347777788877776542 1 211 34566789999999
Q ss_pred HHHHHh
Q 003584 663 RKLMKS 668 (809)
Q Consensus 663 ~~~m~~ 668 (809)
.++|+.
T Consensus 62 ~~Km~~ 67 (79)
T cd02679 62 QQKMKT 67 (79)
T ss_pred HHHHHH
Confidence 999975
No 425
>PF04190 DUF410: Protein of unknown function (DUF410) ; InterPro: IPR007317 This is a family of conserved eukaryotic proteins with undetermined function.; PDB: 3LKU_E 2WPV_G.
Probab=40.13 E-value=4e+02 Score=26.71 Aligned_cols=81 Identities=15% Similarity=0.153 Sum_probs=42.5
Q ss_pred ChhHHhHHHHHHHhcCCHHHHHHHHHhcCCCCeeechHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHH-HHHHHHH
Q 003584 471 SLSVDNSLVLVYAKCGCINDANRVFDSMHTRDVITWTALIMGCAQNGKGKEALQFYDQMLARGTKPDYITFV-GLLFACS 549 (809)
Q Consensus 471 ~~~~~~~li~~y~k~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~pd~~t~~-~ll~a~~ 549 (809)
++.....+...|.+.|++.+|+.-|-.-..++...+..++.-... .|.+.+...|. ..+--|.
T Consensus 89 dp~LH~~~a~~~~~e~~~~~A~~Hfl~~~~~~~~~~~~ll~~~~~----------------~~~~~e~dlfi~RaVL~yL 152 (260)
T PF04190_consen 89 DPELHHLLAEKLWKEGNYYEAERHFLLGTDPSAFAYVMLLEEWST----------------KGYPSEADLFIARAVLQYL 152 (260)
T ss_dssp -HHHHHHHHHHHHHTT-HHHHHHHHHTS-HHHHHHHHHHHHHHHH----------------HTSS--HHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHhhccHHHHHHHHHhcCChhHHHHHHHHHHHHH----------------hcCCcchhHHHHHHHHHHH
Confidence 566777788899999999999887744332222222112211111 22222222222 2233456
Q ss_pred ccCCHHHHHHHHHHhHHh
Q 003584 550 HAGLAENARWYFESMDKV 567 (809)
Q Consensus 550 ~~g~~~~a~~~~~~m~~~ 567 (809)
..+++..|...++...+.
T Consensus 153 ~l~n~~~A~~~~~~f~~~ 170 (260)
T PF04190_consen 153 CLGNLRDANELFDTFTSK 170 (260)
T ss_dssp HTTBHHHHHHHHHHHHHH
T ss_pred HhcCHHHHHHHHHHHHHH
Confidence 677888888877766554
No 426
>PF00244 14-3-3: 14-3-3 protein; InterPro: IPR023410 The 14-3-3 proteins are a large family of approximately 30kDa acidic proteins which exist primarily as homo- and heterodimeric within all eukaryotic cells [, ]. There is a high degree of sequence identity and conservation between all the 14-3-3 isotypes, particularly in the regions which form the dimer interface or line the central ligand binding channel of the dimeric molecule. Each 14-3-3 protein sequence can be roughly divided into three sections: a divergent amino terminus, the conserved core region and a divergent carboxyl terminus. The conserved middle core region of the 14-3-3s encodes an amphipathic groove that forms the main functional domain, a cradle for interacting with client proteins. The monomer consists of nine helices organised in an antiparallel manner, forming an L-shaped structure. The interior of the L-structure is composed of four helices: H3 and H5, which contain many charged and polar amino acids, and H7 and H9, which contain hydrophobic amino acids. These four helices form the concave amphipathic groove that interacts with target peptides. 14-3-3 proteins mainly bind proteins containing phosphothreonine or phosphoserine motifs however exceptions to this rule do exist. Extensive investigation of the 14-3-3 binding site of the mammalian serine/threonine kinase Raf-1 has produced a consensus sequence for 14-3-3-binding, RSxpSxP (in the single-letter amino-acid code, where x denotes any amino acid and p indicates that the next residue is phosphorylated). 14-3-3 proteins appear to effect intracellular signalling in one of three ways - by direct regulation of the catalytic activity of the bound protein, by regulating interactions between the bound protein and other molecules in the cell by sequestration or modification or by controlling the subcellular localisation of the bound ligand. Proteins appear to initially bind to a single dominant site and then subsequently to many, much weaker secondary interaction sites. The 14-3-3 dimer is capable of changing the conformation of its bound ligand whilst itself undergoing minimal structural alteration. This entry represents the structural domain found in 14-3-3 proteins.; PDB: 2O8P_A 3AXY_D 2C74_A 2C63_A 4DX0_A 1YWT_A 3P1O_A 3P1N_A 4DAU_A 3U9X_A ....
Probab=39.81 E-value=3.8e+02 Score=26.38 Aligned_cols=162 Identities=15% Similarity=0.104 Sum_probs=77.2
Q ss_pred HHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHc-cCCHHHHHHHHHHhHHhhCCCCChHHHHHHHHHHhhc
Q 003584 509 LIMGCAQNGKGKEALQFYDQMLARGTKPDYITFVGLLFACSH-AGLAENARWYFESMDKVYGIKPGPDHYACMIDLLGRS 587 (809)
Q Consensus 509 li~~~~~~g~~~~A~~l~~~m~~~g~~pd~~t~~~ll~a~~~-~g~~~~a~~~~~~m~~~~~~~p~~~~~~~li~~~~~~ 587 (809)
++...-+.|+++++...++++...+...+..--+.+-.||-. .|....+++++..+.+...-..+ .....++.-|.+.
T Consensus 7 ~Aklaeq~eRy~dmv~~mk~~~~~~~eLt~eERnLlsvayKn~i~~~R~s~R~l~~~e~~~~~~~~-~~~~~~i~~yk~k 85 (236)
T PF00244_consen 7 LAKLAEQAERYDDMVEYMKQLIEMNPELTEEERNLLSVAYKNVIGSRRASWRILSSIEQKEENKGN-EKQVKLIKDYKKK 85 (236)
T ss_dssp HHHHHHHTTHHHHHHHHHHHHHHTSS---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTTT-HHHHHHHHHHHHH
T ss_pred HHHHHHHhcCHHHHHHHHHHHHccCCCCCHHHHHHHHHHHHhccccchHHHHhhhhHhhhhcccch-hHHHHHHHHHHHH
Confidence 455667788888888888888887655554444444444422 23444555555554433222211 1112222211110
Q ss_pred ------CCHHHHHHHHHhCcCC----CCHH-HHHHH-HHHHH---h-------cCChhHHHHHHHHHhc-----cCCCCC
Q 003584 588 ------GKLIEAKALLDQMVGE----PDAT-VWKAL-LSACR---V-------HGDLELGERAANNLFE-----LEPMNA 640 (809)
Q Consensus 588 ------g~~~eA~~~~~~m~~~----p~~~-~~~~l-l~a~~---~-------~g~~~~A~~~~~~~~~-----~~p~~~ 640 (809)
.--.+...+++....+ +... .|.-+ +.-|+ . ..-.+.|...|+++.+ +.|.+|
T Consensus 86 ie~EL~~~C~eii~lId~~Lip~~~~~eskvfy~KmkgDyyRYlaE~~~~~~~~~~~~~a~~aY~~A~~~a~~~L~~~~p 165 (236)
T PF00244_consen 86 IEDELIDICNEIIRLIDKSLIPSATSPESKVFYYKMKGDYYRYLAEFDSGDEKKEAAEKALEAYEEALEIAKKELPPTHP 165 (236)
T ss_dssp HHHHHHHHHHHHHHHHHHTCHHHS-SHHHHHHHHHHHHHHHHHHHHCTTHHHHHHHHHHHHHHHHHHHHHHHHHSCTTSH
T ss_pred HHHHHHHHHHHHHHHHHHHHhccccchhHHHHHHHHhccccccccccccchhhHHHHHHHHHhhhhHHHHHhcccCCCCc
Confidence 1123444444443311 1111 11111 11111 1 1124667777777654 567666
Q ss_pred ccHHhHh----hhhhhcCChhHHHHHHHHHHhCCC
Q 003584 641 MPYVQLS----NMYSTAGKWEDAARVRKLMKSRGI 671 (809)
Q Consensus 641 ~~~~~l~----~~~~~~g~~~~A~~~~~~m~~~~~ 671 (809)
....... ..|-..|+.++|.++-+...+..+
T Consensus 166 ~rLgl~LN~svF~yei~~~~~~A~~ia~~afd~a~ 200 (236)
T PF00244_consen 166 LRLGLALNYSVFYYEILNDPEKAIEIAKQAFDEAI 200 (236)
T ss_dssp HHHHHHHHHHHHHHHTSS-HHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHH
Confidence 5433222 235668999999998888765543
No 427
>COG4455 ImpE Protein of avirulence locus involved in temperature-dependent protein secretion [General function prediction only]
Probab=39.71 E-value=3.6e+02 Score=26.07 Aligned_cols=125 Identities=18% Similarity=0.137 Sum_probs=72.5
Q ss_pred echHHHHHHHhcCChHHHHHHHHHHHHCCCCC-CHHHHHHHHHHHHccCCHHHHHHHHHHhHHhhCCCCC----hHHHHH
Q 003584 505 TWTALIMGCAQNGKGKEALQFYDQMLARGTKP-DYITFVGLLFACSHAGLAENARWYFESMDKVYGIKPG----PDHYAC 579 (809)
Q Consensus 505 ~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p-d~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~----~~~~~~ 579 (809)
|.+..++.+.+.+...+|+.+.++-++. +| |..+-..++.-++-.|++++|..-++-.. .+.|+ ...|..
T Consensus 3 Tl~~t~seLL~~~sL~dai~~a~~qVka--kPtda~~RhflfqLlcvaGdw~kAl~Ql~l~a---~l~p~~t~~a~lyr~ 77 (273)
T COG4455 3 TLRDTISELLDDNSLQDAIGLARDQVKA--KPTDAGGRHFLFQLLCVAGDWEKALAQLNLAA---TLSPQDTVGASLYRH 77 (273)
T ss_pred chHHHHHHHHHhccHHHHHHHHHHHHhc--CCccccchhHHHHHHhhcchHHHHHHHHHHHh---hcCcccchHHHHHHH
Confidence 3445567778888888999888887775 45 44466677788888999999887776543 23343 355555
Q ss_pred HHHHHhhcCCHHHHH-HHHHhCcCC----CCHHHHHHHH-HHHHhc--CChhHHHHHHHHHhccCCCCCc
Q 003584 580 MIDLLGRSGKLIEAK-ALLDQMVGE----PDATVWKALL-SACRVH--GDLELGERAANNLFELEPMNAM 641 (809)
Q Consensus 580 li~~~~~~g~~~eA~-~~~~~m~~~----p~~~~~~~ll-~a~~~~--g~~~~A~~~~~~~~~~~p~~~~ 641 (809)
+|.. +.+. ++|..-..+ .....|-..+ .+..-+ |..+.+..+-+.+++-.|..++
T Consensus 78 lir~-------ea~R~evfag~~~Pgflg~p~p~wva~L~aala~h~dg~gea~~alreqal~aa~~~iG 140 (273)
T COG4455 78 LIRC-------EAARNEVFAGGAVPGFLGGPSPEWVAALLAALALHSDGAGEARTALREQALKAAPVPIG 140 (273)
T ss_pred HHHH-------HHHHHHHhccCCCCCCcCCCCHHHHHHHHHHHhcccCCcchHHHHHHHHHHhhCCCCCc
Confidence 5542 2222 233221111 1234555444 443333 3445455666777777665443
No 428
>KOG0292 consensus Vesicle coat complex COPI, alpha subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=38.85 E-value=3.4e+02 Score=31.91 Aligned_cols=131 Identities=17% Similarity=0.171 Sum_probs=85.1
Q ss_pred HHHHhcCCHHHHHHHHHhcCCCCeeechHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCCHHHHHH
Q 003584 480 LVYAKCGCINDANRVFDSMHTRDVITWTALIMGCAQNGKGKEALQFYDQMLARGTKPDYITFVGLLFACSHAGLAENARW 559 (809)
Q Consensus 480 ~~y~k~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~pd~~t~~~ll~a~~~~g~~~~a~~ 559 (809)
+....||+++.|.+.-.++.++ ..|..|...-...|+.+-|...|++... |..|---|.-.|+.++-.+
T Consensus 651 ~LaLe~gnle~ale~akkldd~--d~w~rLge~Al~qgn~~IaEm~yQ~~kn---------fekLsfLYliTgn~eKL~K 719 (1202)
T KOG0292|consen 651 ELALECGNLEVALEAAKKLDDK--DVWERLGEEALRQGNHQIAEMCYQRTKN---------FEKLSFLYLITGNLEKLSK 719 (1202)
T ss_pred eeehhcCCHHHHHHHHHhcCcH--HHHHHHHHHHHHhcchHHHHHHHHHhhh---------hhheeEEEEEeCCHHHHHH
Confidence 4456789999999888777654 4799999999999999999999888664 2333334556788887776
Q ss_pred HHHHhHHhhCCCCChHHHHHHHHHHhhcCCHHHHHHHHHhCcCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHhc
Q 003584 560 YFESMDKVYGIKPGPDHYACMIDLLGRSGKLIEAKALLDQMVGEPDATVWKALLSACRVHGDLELGERAANNLFE 634 (809)
Q Consensus 560 ~~~~m~~~~~~~p~~~~~~~li~~~~~~g~~~eA~~~~~~m~~~p~~~~~~~ll~a~~~~g~~~~A~~~~~~~~~ 634 (809)
+......+ -|... ..+..+ -.|+.++-.++++....-|- .|. .-..+|.-++|+++.+++-.
T Consensus 720 m~~iae~r----~D~~~-~~qnal--Yl~dv~ervkIl~n~g~~~l--ayl----ta~~~G~~~~ae~l~ee~~~ 781 (1202)
T KOG0292|consen 720 MMKIAEIR----NDATG-QFQNAL--YLGDVKERVKILENGGQLPL--AYL----TAAAHGLEDQAEKLGEELEK 781 (1202)
T ss_pred HHHHHHhh----hhhHH-HHHHHH--HhccHHHHHHHHHhcCcccH--HHH----HHhhcCcHHHHHHHHHhhcc
Confidence 65544322 12211 011111 25788888888876653222 221 23567888889888887755
No 429
>PF04190 DUF410: Protein of unknown function (DUF410) ; InterPro: IPR007317 This is a family of conserved eukaryotic proteins with undetermined function.; PDB: 3LKU_E 2WPV_G.
Probab=38.53 E-value=4.2e+02 Score=26.53 Aligned_cols=37 Identities=24% Similarity=0.208 Sum_probs=24.3
Q ss_pred CchHHHHHHHHHHHhcCCHHHHHHHHhhcCCCCHhHH
Q 003584 369 GYKFVNNALIDMYAKQGNLDCAFMVFNLMQDKDVISW 405 (809)
Q Consensus 369 ~~~~~~~~li~~y~~~g~~~~A~~~f~~~~~~~~~~~ 405 (809)
-|+.....+...|.+.|++.+|+..|-.-.+++...+
T Consensus 88 Gdp~LH~~~a~~~~~e~~~~~A~~Hfl~~~~~~~~~~ 124 (260)
T PF04190_consen 88 GDPELHHLLAEKLWKEGNYYEAERHFLLGTDPSAFAY 124 (260)
T ss_dssp --HHHHHHHHHHHHHTT-HHHHHHHHHTS-HHHHHHH
T ss_pred CCHHHHHHHHHHHHhhccHHHHHHHHHhcCChhHHHH
Confidence 4667778888889999999999887765544444333
No 430
>KOG2063 consensus Vacuolar assembly/sorting proteins VPS39/VAM6/VPS3 [Intracellular trafficking, secretion, and vesicular transport]
Probab=38.21 E-value=7.8e+02 Score=29.54 Aligned_cols=129 Identities=13% Similarity=0.114 Sum_probs=62.8
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHhhcCCccCHhHHHHHHHHHhcccchhHHHHHHHHHHHhCCC--CChhHHhHHHHH
Q 003584 404 SWTSLITGCAYHGSYEEALKYFSDMRISGICPDHVVVSSILSACAELTVLEFGQQVHAVFLKSGGC--SSLSVDNSLVLV 481 (809)
Q Consensus 404 ~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~~~~~~a~~~~~~~~~~g~~--~~~~~~~~li~~ 481 (809)
-|..|+..|...|+.++|++++.+.....-.-|... .+.-+.+.+++.+.+-+ +-...|...
T Consensus 506 ~y~~Li~LY~~kg~h~~AL~ll~~l~d~~~~~d~~~-------------~~~~e~ii~YL~~l~~~~~~Li~~y~~w--- 569 (877)
T KOG2063|consen 506 KYRELIELYATKGMHEKALQLLRDLVDEDSDTDSFQ-------------LDGLEKIIEYLKKLGAENLDLILEYADW--- 569 (877)
T ss_pred cHHHHHHHHHhccchHHHHHHHHHHhccccccccch-------------hhhHHHHHHHHHHhcccchhHHHHHhhh---
Confidence 377888889999999999999988876320011100 01111233333333322 111111111
Q ss_pred HHhcCCHHHHHHHHHhcCCCCeeechH-HHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHH
Q 003584 482 YAKCGCINDANRVFDSMHTRDVITWTA-LIMGCAQNGKGKEALQFYDQMLARGTKPDYITFVGLLFACS 549 (809)
Q Consensus 482 y~k~g~~~~A~~~~~~~~~~~~~~~~~-li~~~~~~g~~~~A~~l~~~m~~~g~~pd~~t~~~ll~a~~ 549 (809)
.-..+.+...++|..-.+....+.+. -+-.|......+-++.+++.+....-.++..-++.++.-|.
T Consensus 570 -vl~~~p~~gi~Ift~~~~~~~~sis~~~Vl~~l~~~~~~l~I~YLE~li~~~~~~~~~lht~ll~ly~ 637 (877)
T KOG2063|consen 570 -VLNKNPEAGIQIFTSEDKQEAESISRDDVLNYLKSKEPKLLIPYLEHLISDNRLTSTLLHTVLLKLYL 637 (877)
T ss_pred -hhccCchhheeeeeccChhhhccCCHHHHHHHhhhhCcchhHHHHHHHhHhccccchHHHHHHHHHHH
Confidence 11234455555554411101111111 23345566667777777777776655556555555555443
No 431
>PF12862 Apc5: Anaphase-promoting complex subunit 5
Probab=37.86 E-value=72 Score=25.96 Aligned_cols=52 Identities=17% Similarity=0.232 Sum_probs=34.3
Q ss_pred HhcCChhHHHHHHHHHhccCCCC---------CccHHhHhhhhhhcCChhHHHHHHHHHHh
Q 003584 617 RVHGDLELGERAANNLFELEPMN---------AMPYVQLSNMYSTAGKWEDAARVRKLMKS 668 (809)
Q Consensus 617 ~~~g~~~~A~~~~~~~~~~~p~~---------~~~~~~l~~~~~~~g~~~~A~~~~~~m~~ 668 (809)
.+.||+..|.+.+.+.+...... ..+...++.++...|.+++|...+++..+
T Consensus 9 ~~~~dy~~A~d~L~~~fD~~~~~~~~~~~~~~~~all~lA~~~~~~G~~~~A~~~l~eAi~ 69 (94)
T PF12862_consen 9 LRSGDYSEALDALHRYFDYAKQSNNSSSNSGLAYALLNLAELHRRFGHYEEALQALEEAIR 69 (94)
T ss_pred HHcCCHHHHHHHHHHHHHHHhhcccchhhHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHH
Confidence 45567777766666665432111 12345677888889999999998888754
No 432
>PF08225 Antimicrobial19: Pseudin antimicrobial peptide; InterPro: IPR013156 Pseudins are a subfamily of the FSAP family (Frog Secreted Active Peptides) extracted from the skin of the paradoxical frog Pseudis paradoxa (Paradoxical frog). The pseudins belong to the class of cationic, amphipathic-helical antimicrobial peptides [].; GO: 0006952 defense response
Probab=37.33 E-value=23 Score=19.29 Aligned_cols=10 Identities=30% Similarity=0.507 Sum_probs=7.3
Q ss_pred chhHHHHHHh
Q 003584 771 DCHTAMKYIS 780 (809)
Q Consensus 771 dch~~~k~~s 780 (809)
.-|.++|+||
T Consensus 11 glhe~ikli~ 20 (23)
T PF08225_consen 11 GLHEVIKLIN 20 (23)
T ss_pred HHHHHHHHHh
Confidence 4578888876
No 433
>cd08332 CARD_CASP2 Caspase activation and recruitment domain of Caspase-2. Caspase activation and recruitment domain (CARD) similar to that found in caspase-2. Caspases are aspartate-specific cysteine proteases with functions in apoptosis and immune signaling. Caspase-2 (also known as ICH1, NEDD2, or CASP2) is one of the most evolutionarily conserved caspases, and plays a role in apoptosis, DNA damage response, cell cycle regulation, and tumor suppression. It is localized in the nucleus and exhibits properties of both an initiator and an effector caspase. In general, CARDs are death domains (DDs) found associated with caspases. They are known to be important in the signaling pathways for apoptosis, inflammation, and host-defense mechanisms. DDs are protein-protein interaction domains found in a variety of domain architectures. Their common feature is that they form homodimers by self-association or heterodimers by associating with other members of the DD superfamily including PYRIN and
Probab=37.33 E-value=81 Score=25.51 Aligned_cols=56 Identities=14% Similarity=0.109 Sum_probs=38.8
Q ss_pred HHHhcCCCCcchHHHHHHHHHccCChhHHHHHhhhCCCCCcchHHHHHHHHHcCCC
Q 003584 58 LFEKMSDRDGFTWNTMIAAYANSGRLREAKKLFNETPFKNFFTWSSLIYGYSNYGL 113 (809)
Q Consensus 58 ~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~f~~~~~~~~~~~~~li~~~~~~g~ 113 (809)
+++...+.++.+-...-...+..-+.+.+.++++.++.++..+|..+..++-..+.
T Consensus 25 v~~~L~~~gvlt~~~~~~I~~~~t~~~k~~~Lld~L~~RG~~AF~~F~~aL~~~~~ 80 (90)
T cd08332 25 LLIHLLQKDILTDSMAESIMAKPTSFSQNVALLNLLPKRGPRAFSAFCEALRETSQ 80 (90)
T ss_pred HHHHHHHcCCCCHHHHHHHHcCCCcHHHHHHHHHHHHHhChhHHHHHHHHHHhcCh
Confidence 34444444555555544445555678888999999999998888888888866554
No 434
>COG3019 Predicted metal-binding protein [General function prediction only]
Probab=36.35 E-value=54 Score=28.60 Aligned_cols=43 Identities=16% Similarity=0.264 Sum_probs=30.2
Q ss_pred HHHHHHhhCCCCCC----cEEEEcccccCcchhHHHHHHhhhhceEEEE
Q 003584 745 LAVAFGLLTLPQGA----PIRIFKNLRVCGDCHTAMKYISAVYLRHIIL 789 (809)
Q Consensus 745 la~~~~~~~~~~~~----~~~i~kn~r~c~dch~~~k~~s~~~~r~i~~ 789 (809)
...+++|+.|.++. .+.+.|| .-|+-||.+++++- .-|=+|-+
T Consensus 9 ~l~a~~l~~~~~~~a~~~~~~vyks-PnCGCC~~w~~~mk-~~Gf~Vk~ 55 (149)
T COG3019 9 SLAALGLGSTGPAQAQATEMVVYKS-PNCGCCDEWAQHMK-ANGFEVKV 55 (149)
T ss_pred HHHHHHhhcccchhcceeeEEEEeC-CCCccHHHHHHHHH-hCCcEEEE
Confidence 45566777777653 4666666 46999999999987 55555543
No 435
>KOG2297 consensus Predicted translation factor, contains W2 domain [Translation, ribosomal structure and biogenesis]
Probab=36.26 E-value=4.8e+02 Score=26.55 Aligned_cols=61 Identities=20% Similarity=0.233 Sum_probs=33.7
Q ss_pred HHHhcCC-HHHHHHHHhhcCC-CCHhHHHHHHHHHHhcCCHHHHHHHHHHHhhcCCccCHhHHHHHHHHHhccc
Q 003584 380 MYAKQGN-LDCAFMVFNLMQD-KDVISWTSLITGCAYHGSYEEALKYFSDMRISGICPDHVVVSSILSACAELT 451 (809)
Q Consensus 380 ~y~~~g~-~~~A~~~f~~~~~-~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~~ 451 (809)
.+.+.|- ..-|.++|..... +| .+.+|+++-+.+.-+.-+++| +|+..+.-.....+...|
T Consensus 175 ~LVkeGi~l~F~~~lFk~~~~Ek~---i~~lis~Lrkg~md~rLmeff--------Ppnkrs~E~Fak~Ft~ag 237 (412)
T KOG2297|consen 175 NLVKEGIALSFAVKLFKEWLVEKD---INDLISSLRKGKMDDRLMEFF--------PPNKRSVEHFAKYFTDAG 237 (412)
T ss_pred hHHHHhHHHHHHHHHHHHHHhhcc---HHHHHHHHHhcChHhHHHHhc--------CCcchhHHHHHHHHhHhh
Confidence 3444443 3446667766543 33 356677766666555555554 677766665555554444
No 436
>KOG2659 consensus LisH motif-containing protein [Cytoskeleton]
Probab=36.04 E-value=2.7e+02 Score=27.04 Aligned_cols=94 Identities=18% Similarity=0.140 Sum_probs=51.6
Q ss_pred echHHHHHHHhcCChHHHHHHHHHHHHCCCCC---CHHHH--HHHHHHHHccCCHHHHHHHHHHhHHhhCCCCChHHHHH
Q 003584 505 TWTALIMGCAQNGKGKEALQFYDQMLARGTKP---DYITF--VGLLFACSHAGLAENARWYFESMDKVYGIKPGPDHYAC 579 (809)
Q Consensus 505 ~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p---d~~t~--~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~~~~~~~ 579 (809)
-.|.|+--|.-+..+.+|-+.|.+ ..|+.| |..++ ..-+......|++++|++....+... -+..|.+.+--
T Consensus 28 d~n~LVmnylv~eg~~EaA~~Fa~--e~~i~~~~~d~~~~~eR~~Ir~~I~~G~Ie~Aie~in~l~Pe-iLd~n~~l~F~ 104 (228)
T KOG2659|consen 28 DLNRLVMNYLVHEGYVEAAEKFAK--ESGIKPPSIDLDSMDERLQIRRAIEEGQIEEAIEKVNQLNPE-ILDTNRELFFH 104 (228)
T ss_pred hHHHHHHHHHHhccHHHHHHHhcc--ccCCCCccCchhhHhHHHHHHHHHHhccHHHHHHHHHHhChH-HHccchhHHHH
Confidence 345555555555555555555543 334444 22222 23455566777888777777655433 33334322222
Q ss_pred HH----HHHhhcCCHHHHHHHHHhCc
Q 003584 580 MI----DLLGRSGKLIEAKALLDQMV 601 (809)
Q Consensus 580 li----~~~~~~g~~~eA~~~~~~m~ 601 (809)
|. --+.|.|..++|+++.+.-.
T Consensus 105 Lq~q~lIEliR~~~~eeal~F~q~~L 130 (228)
T KOG2659|consen 105 LQQLHLIELIREGKTEEALEFAQTKL 130 (228)
T ss_pred HHHHHHHHHHHhhhHHHHHHHHHHHc
Confidence 21 12568888999999887654
No 437
>COG2178 Predicted RNA-binding protein of the translin family [Translation, ribosomal structure and biogenesis]
Probab=35.81 E-value=3e+02 Score=25.90 Aligned_cols=51 Identities=16% Similarity=0.200 Sum_probs=29.4
Q ss_pred HHhcCCHHHHHHHHHhcCC------CCeeechHHHH-HHHhcCC--hHHHHHHHHHHHHC
Q 003584 482 YAKCGCINDANRVFDSMHT------RDVITWTALIM-GCAQNGK--GKEALQFYDQMLAR 532 (809)
Q Consensus 482 y~k~g~~~~A~~~~~~~~~------~~~~~~~~li~-~~~~~g~--~~~A~~l~~~m~~~ 532 (809)
....|++++|..-++++.+ +-...|..+.. +++.++. +-+|..++.-....
T Consensus 39 ~~H~~~~eeA~~~l~~a~~~v~~Lk~~l~~~pel~~ag~~~~a~QEyvEA~~l~~~l~~~ 98 (204)
T COG2178 39 LLHRGDFEEAEKKLKKASEAVEKLKRLLAGFPELYFAGFVTTALQEYVEATLLYSILKDG 98 (204)
T ss_pred HHHhccHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHhhcchHHHHHHHHHHHHHHhcC
Confidence 3445666766666665541 23345665555 6676664 55676666665554
No 438
>PF11846 DUF3366: Domain of unknown function (DUF3366); InterPro: IPR021797 This domain is functionally uncharacterised. This domain is found in bacteria. This presumed domain is about 200 amino acids in length.
Probab=35.44 E-value=1.1e+02 Score=28.96 Aligned_cols=53 Identities=21% Similarity=0.204 Sum_probs=35.8
Q ss_pred HccCCHHHHHHHHHHhHHhhCCCCChHHHHHHHHHHhhcCCHHHHHHHHHhCc
Q 003584 549 SHAGLAENARWYFESMDKVYGIKPGPDHYACMIDLLGRSGKLIEAKALLDQMV 601 (809)
Q Consensus 549 ~~~g~~~~a~~~~~~m~~~~~~~p~~~~~~~li~~~~~~g~~~eA~~~~~~m~ 601 (809)
....+.+......+.+.+.....|+...|..++.++...|+.++|....+++.
T Consensus 119 ~~~~~~~~l~~~~~~a~~~l~~~P~~~~~~~~a~~l~~~G~~~eA~~~~~~~~ 171 (193)
T PF11846_consen 119 RLPPDPEMLEAYIEWAERLLRRRPDPNVYQRYALALALLGDPEEARQWLARAR 171 (193)
T ss_pred cCCCCHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 35555555555555555544666777777777777888888888877777665
No 439
>PF10579 Rapsyn_N: Rapsyn N-terminal myristoylation and linker region; InterPro: IPR019568 Neuromuscular junction formation relies upon the clustering of acetylcholine receptors and other proteins in the muscle membrane. Rapsyn is a peripheral membrane protein that is selectively concentrated at the neuromuscular junction and is essential for the formation of synaptic acetylcholine receptor aggregates. Acetylcholine receptors fail to aggregate beneath nerve terminals in mice where rapsyn has been knocked out. The N-terminal six amino acids of rapsyn are its myristoylation site, and myristoylation is necessary for the targeting of the protein to the membrane []. ; GO: 0008270 zinc ion binding, 0033130 acetylcholine receptor binding, 0007268 synaptic transmission, 0005856 cytoskeleton, 0030054 cell junction, 0045211 postsynaptic membrane
Probab=35.42 E-value=1e+02 Score=24.20 Aligned_cols=47 Identities=17% Similarity=0.102 Sum_probs=33.8
Q ss_pred hcCChHHHHHHHHHHHHCCCCCC-H-HHHHHHHHHHHccCCHHHHHHHH
Q 003584 515 QNGKGKEALQFYDQMLARGTKPD-Y-ITFVGLLFACSHAGLAENARWYF 561 (809)
Q Consensus 515 ~~g~~~~A~~l~~~m~~~g~~pd-~-~t~~~ll~a~~~~g~~~~a~~~~ 561 (809)
...+.++|+..|+..++.-..|. . .++..++.|++..|.+++.+++-
T Consensus 18 ~~~~~~~Al~~W~~aL~k~~~~~~rf~~lG~l~qA~~e~Gkyr~~L~fA 66 (80)
T PF10579_consen 18 HQNETQQALQKWRKALEKITDREDRFRVLGYLIQAHMEWGKYREMLAFA 66 (80)
T ss_pred ccchHHHHHHHHHHHHhhcCChHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 55667888888888877533332 2 36778888899999888877653
No 440
>COG0790 FOG: TPR repeat, SEL1 subfamily [General function prediction only]
Probab=35.34 E-value=4.9e+02 Score=26.35 Aligned_cols=76 Identities=14% Similarity=-0.007 Sum_probs=40.5
Q ss_pred HHHHHHHhCcCCCCHHHHHHHHHHHHh----cCChhHHHHHHHHHhccCCCCCccHHhHhhhhhhcC-------------
Q 003584 592 EAKALLDQMVGEPDATVWKALLSACRV----HGDLELGERAANNLFELEPMNAMPYVQLSNMYSTAG------------- 654 (809)
Q Consensus 592 eA~~~~~~m~~~p~~~~~~~ll~a~~~----~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g------------- 654 (809)
.|...+.++...-+......|...|.. ..|.++|...|+++-+.+. ......++ .+...|
T Consensus 173 ~A~~~~~~aa~~~~~~a~~~lg~~y~~G~Gv~~d~~~A~~wy~~Aa~~g~--~~a~~~~~-~~~~~g~g~~~~~~~~~~~ 249 (292)
T COG0790 173 KALYLYRKAAELGNPDAQLLLGRMYEKGLGVPRDLKKAFRWYKKAAEQGD--GAACYNLG-LMYLNGEGVKKAAFLTAAK 249 (292)
T ss_pred hHHHHHHHHHHhcCHHHHHHHHHHHHcCCCCCcCHHHHHHHHHHHHHCCC--HHHHHHHH-HHHhcCCCchhhhhccccc
Confidence 455555555443344444444433322 2356777777777766655 34444444 444444
Q ss_pred --ChhHHHHHHHHHHhCC
Q 003584 655 --KWEDAARVRKLMKSRG 670 (809)
Q Consensus 655 --~~~~A~~~~~~m~~~~ 670 (809)
+...|...+......+
T Consensus 250 ~~~~~~a~~~~~~~~~~~ 267 (292)
T COG0790 250 EEDKKQALEWLQKACELG 267 (292)
T ss_pred CCCHHHHHHHHHHHHHcC
Confidence 5666666666665554
No 441
>KOG3824 consensus Huntingtin interacting protein HYPE [General function prediction only]
Probab=34.90 E-value=52 Score=32.99 Aligned_cols=53 Identities=15% Similarity=0.177 Sum_probs=45.1
Q ss_pred HHHhcCChhHHHHHHHHHhccCCCCCccHHhHhhhhhhcCChhHHHHHHHHHH
Q 003584 615 ACRVHGDLELGERAANNLFELEPMNAMPYVQLSNMYSTAGKWEDAARVRKLMK 667 (809)
Q Consensus 615 a~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~ 667 (809)
-..+.|+.+.|..+|+.++.+.|.++.....++.......+.-+|..++-+..
T Consensus 125 ~~~~~Gk~ekA~~lfeHAlalaP~~p~~L~e~G~f~E~~~~iv~ADq~Y~~AL 177 (472)
T KOG3824|consen 125 RSRKDGKLEKAMTLFEHALALAPTNPQILIEMGQFREMHNEIVEADQCYVKAL 177 (472)
T ss_pred HHHhccchHHHHHHHHHHHhcCCCCHHHHHHHhHHHHhhhhhHhhhhhhheee
Confidence 35678999999999999999999999999988888877788888887776543
No 442
>PF12796 Ank_2: Ankyrin repeats (3 copies); InterPro: IPR020683 This entry represents the ankyrin repeat-containing domain. These domains contain multiple repeats of a beta(2)-alpha(2) motif. The ankyrin repeat is one of the most common protein-protein interaction motifs in nature. Ankyrin repeats are tandemly repeated modules of about 33 amino acids. They occur in a large number of functionally diverse proteins mainly from eukaryotes. The few known examples from prokaryotes and viruses may be the result of horizontal gene transfers []. The repeat has been found in proteins of diverse function such as transcriptional initiators, cell-cycle regulators, cytoskeletal, ion transporters and signal transducers. The ankyrin fold appears to be defined by its structure rather than its function since there is no specific sequence or structure which is universally recognised by it. The conserved fold of the ankyrin repeat unit is known from several crystal and solution structures [, , , ]. Each repeat folds into a helix-loop-helix structure with a beta-hairpin/loop region projecting out from the helices at a 90o angle. The repeats stack together to form an L-shaped structure [, ].; PDB: 3AAA_C 3F6Q_A 2KBX_A 3IXE_A 3TWR_D 3TWV_A 3TWT_B 3TWQ_A 3TWS_A 3TWX_B ....
Probab=34.37 E-value=2e+02 Score=22.64 Aligned_cols=80 Identities=23% Similarity=0.177 Sum_probs=42.8
Q ss_pred HhcCCChHHHHHHHHhcCCCCcchHHHHHHHHHccCChhHHHHHhhhCCCCCc---chHHHHHHHHHcCCCchhHHHHHH
Q 003584 46 FSNSGEIDEAGQLFEKMSDRDGFTWNTMIAAYANSGRLREAKKLFNETPFKNF---FTWSSLIYGYSNYGLDIEAFELFW 122 (809)
Q Consensus 46 ~~~~~~~~~a~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~f~~~~~~~~---~~~~~li~~~~~~g~~~~A~~~~~ 122 (809)
.++.|+++..+.+++...+.+. .++.+...+..|+.+-+..+++.-..++. .-++.|..+. ..|+ .++++
T Consensus 4 A~~~~~~~~~~~ll~~~~~~~~--~~~~l~~A~~~~~~~~~~~Ll~~g~~~~~~~~~g~t~L~~A~-~~~~----~~~~~ 76 (89)
T PF12796_consen 4 AAQNGNLEILKFLLEKGADINL--GNTALHYAAENGNLEIVKLLLENGADINSQDKNGNTALHYAA-ENGN----LEIVK 76 (89)
T ss_dssp HHHTTTHHHHHHHHHTTSTTTS--SSBHHHHHHHTTTHHHHHHHHHTTTCTT-BSTTSSBHHHHHH-HTTH----HHHHH
T ss_pred HHHcCCHHHHHHHHHCcCCCCC--CCCHHHHHHHcCCHHHHHHHHHhcccccccCCCCCCHHHHHH-HcCC----HHHHH
Confidence 4566777777777775555443 33355555566777777777765444333 2344444432 2332 34455
Q ss_pred HHHHcCCCCC
Q 003584 123 QMQLEGYRPS 132 (809)
Q Consensus 123 ~m~~~g~~p~ 132 (809)
.+.+.|..|+
T Consensus 77 ~Ll~~g~~~~ 86 (89)
T PF12796_consen 77 LLLEHGADVN 86 (89)
T ss_dssp HHHHTTT-TT
T ss_pred HHHHcCCCCC
Confidence 5555565554
No 443
>cd08819 CARD_MDA5_2 Caspase activation and recruitment domain found in MDA5, second repeat. Caspase activation and recruitment domain (CARD) found in MDA5 (melanoma-differentiation-associated gene 5), second repeat. MDA5, also known as IFIH1, contains two N-terminal CARD domains and a C-terminal RNA helicase domain. MDA5 is a cytoplasmic DEAD box RNA helicase that plays an important role in host antiviral response by sensing incoming viral RNA. Upon activation, the signal is transferred to downstream pathways via the adaptor molecule IPS-1 (MAVS, VISA, CARDIF), leading to the induction of type I interferons. Although very similar in sequence, MDA5 recognizes different sets of viruses compared to RIG-I, a related RNA helicase. MDA5 associates with IPS-1 through a CARD-CARD interaction. In general, CARDs are death domains (DDs) found associated with caspases. They are known to be important in the signaling pathways for apoptosis, inflammation, and host-defense mechanisms. DDs are protei
Probab=34.27 E-value=2.2e+02 Score=22.86 Aligned_cols=65 Identities=17% Similarity=0.159 Sum_probs=38.2
Q ss_pred HHHHHHHHHhCCCCchhHHHHHHHHHHhCCChHHHHHHHhccCCCCeeeHHHHHHHHHhcCChhHHH
Q 003584 255 AQVHGCILSSGFEANVYVQSALIDMYAKCGDLDSARRLLEYSEIDNEVSWNSMIVGFARQGFHKEAL 321 (809)
Q Consensus 255 ~~~~~~~~~~g~~~~~~~~~~Li~~y~~~g~~~~A~~~f~~~~~~~~~~~~~li~~~~~~g~~~~A~ 321 (809)
.++++.+++.|+- +......+-..-...|+.+.|+.+++.++ +....|...++++-+.|.-.-|.
T Consensus 22 ~~v~d~ll~~~il-T~~d~e~I~aa~~~~g~~~~ar~LL~~L~-rg~~aF~~Fl~aLreT~~~~LA~ 86 (88)
T cd08819 22 RDVCDKCLEQGLL-TEEDRNRIEAATENHGNESGARELLKRIV-QKEGWFSKFLQALRETEHHELAR 86 (88)
T ss_pred HHHHHHHHhcCCC-CHHHHHHHHHhccccCcHHHHHHHHHHhc-cCCcHHHHHHHHHHHcCchhhhh
Confidence 3455555555532 11122222222224577788888888888 77777888888877777655443
No 444
>PHA03100 ankyrin repeat protein; Provisional
Probab=33.60 E-value=6.9e+02 Score=27.55 Aligned_cols=15 Identities=13% Similarity=0.264 Sum_probs=6.9
Q ss_pred HccCChhHHHHHhhh
Q 003584 78 ANSGRLREAKKLFNE 92 (809)
Q Consensus 78 ~~~g~~~~A~~~f~~ 92 (809)
++.|+.+-...+++.
T Consensus 43 ~~~~~~~ivk~Ll~~ 57 (480)
T PHA03100 43 KEARNIDVVKILLDN 57 (480)
T ss_pred hccCCHHHHHHHHHc
Confidence 344444444444443
No 445
>PRK10564 maltose regulon periplasmic protein; Provisional
Probab=32.82 E-value=70 Score=32.34 Aligned_cols=41 Identities=20% Similarity=0.312 Sum_probs=32.7
Q ss_pred echHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHH
Q 003584 505 TWTALIMGCAQNGKGKEALQFYDQMLARGTKPDYITFVGLL 545 (809)
Q Consensus 505 ~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~pd~~t~~~ll 545 (809)
-||..|..-.+.|++++|+.+++|..+.|+.--..||..-+
T Consensus 259 Yy~~aI~~AVk~gDi~KAL~LldEAe~LG~~~Ar~tFik~V 299 (303)
T PRK10564 259 YFNQAIKQAVKKGDVDKALKLLDEAERLGSTSARSTFISSV 299 (303)
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHhCCchHHHHHHHHh
Confidence 36788888899999999999999999998776666665443
No 446
>PF14689 SPOB_a: Sensor_kinase_SpoOB-type, alpha-helical domain; PDB: 1F51_C 2FTK_B 1IXM_B.
Probab=32.65 E-value=99 Score=22.90 Aligned_cols=30 Identities=20% Similarity=0.498 Sum_probs=15.6
Q ss_pred CHHHHHHHHHHHHccCCHHHHHHHHHHhHH
Q 003584 537 DYITFVGLLFACSHAGLAENARWYFESMDK 566 (809)
Q Consensus 537 d~~t~~~ll~a~~~~g~~~~a~~~~~~m~~ 566 (809)
|..-...++.++.+.|++++|.++.+.+.+
T Consensus 22 D~~NhLqvI~gllqlg~~~~a~eYi~~~~~ 51 (62)
T PF14689_consen 22 DFLNHLQVIYGLLQLGKYEEAKEYIKELSK 51 (62)
T ss_dssp HHHHHHHHHHHHHHTT-HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHCCCHHHHHHHHHHHHH
Confidence 333444555566666666666665555543
No 447
>PF11848 DUF3368: Domain of unknown function (DUF3368); InterPro: IPR021799 This domain is functionally uncharacterised. This domain is found in bacteria and archaea. This presumed domain is about 50 amino acids in length.
Probab=32.52 E-value=1e+02 Score=21.37 Aligned_cols=32 Identities=13% Similarity=0.134 Sum_probs=16.3
Q ss_pred hhCCChHHHHHHHHHHHHCCCCCCcchHHHHH
Q 003584 211 SQNGYGFKAIECFRDMRVEGVESNQFTFPSIL 242 (809)
Q Consensus 211 ~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll 242 (809)
.+.|-..++..++++|.+.|+.-+...|..++
T Consensus 13 k~~GlI~~~~~~l~~l~~~g~~is~~l~~~~L 44 (48)
T PF11848_consen 13 KRRGLISEVKPLLDRLQQAGFRISPKLIEEIL 44 (48)
T ss_pred HHcCChhhHHHHHHHHHHcCcccCHHHHHHHH
Confidence 34455555555555555555554444444443
No 448
>PF09986 DUF2225: Uncharacterized protein conserved in bacteria (DUF2225); InterPro: IPR018708 This conserved bacterial family has no known function.
Probab=32.45 E-value=4.1e+02 Score=25.66 Aligned_cols=27 Identities=26% Similarity=0.356 Sum_probs=17.5
Q ss_pred HHHHHHhhcCCHHHHHHHHHhCcCCCC
Q 003584 579 CMIDLLGRSGKLIEAKALLDQMVGEPD 605 (809)
Q Consensus 579 ~li~~~~~~g~~~eA~~~~~~m~~~p~ 605 (809)
.+..+..|.|+.++|...|.++...++
T Consensus 170 LigeL~rrlg~~~eA~~~fs~vi~~~~ 196 (214)
T PF09986_consen 170 LIGELNRRLGNYDEAKRWFSRVIGSKK 196 (214)
T ss_pred HHHHHHHHhCCHHHHHHHHHHHHcCCC
Confidence 455666677777777777777665433
No 449
>PF14689 SPOB_a: Sensor_kinase_SpoOB-type, alpha-helical domain; PDB: 1F51_C 2FTK_B 1IXM_B.
Probab=31.88 E-value=76 Score=23.52 Aligned_cols=27 Identities=26% Similarity=0.334 Sum_probs=20.4
Q ss_pred echHHHHHHHhcCChHHHHHHHHHHHH
Q 003584 505 TWTALIMGCAQNGKGKEALQFYDQMLA 531 (809)
Q Consensus 505 ~~~~li~~~~~~g~~~~A~~l~~~m~~ 531 (809)
-.-.+|.||.+.|++++|.++.+++..
T Consensus 25 NhLqvI~gllqlg~~~~a~eYi~~~~~ 51 (62)
T PF14689_consen 25 NHLQVIYGLLQLGKYEEAKEYIKELSK 51 (62)
T ss_dssp HHHHHHHHHHHTT-HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHH
Confidence 334578889999999999988888765
No 450
>PF11848 DUF3368: Domain of unknown function (DUF3368); InterPro: IPR021799 This domain is functionally uncharacterised. This domain is found in bacteria and archaea. This presumed domain is about 50 amino acids in length.
Probab=31.80 E-value=1.7e+02 Score=20.28 Aligned_cols=33 Identities=15% Similarity=0.122 Sum_probs=22.2
Q ss_pred HhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHH
Q 003584 514 AQNGKGKEALQFYDQMLARGTKPDYITFVGLLF 546 (809)
Q Consensus 514 ~~~g~~~~A~~l~~~m~~~g~~pd~~t~~~ll~ 546 (809)
.+.|-.+++..++++|.+.|+.-+...+..++.
T Consensus 13 k~~GlI~~~~~~l~~l~~~g~~is~~l~~~~L~ 45 (48)
T PF11848_consen 13 KRRGLISEVKPLLDRLQQAGFRISPKLIEEILR 45 (48)
T ss_pred HHcCChhhHHHHHHHHHHcCcccCHHHHHHHHH
Confidence 456666777777777777777766666655543
No 451
>COG4941 Predicted RNA polymerase sigma factor containing a TPR repeat domain [Transcription]
Probab=31.23 E-value=5.1e+02 Score=26.80 Aligned_cols=120 Identities=15% Similarity=0.104 Sum_probs=76.1
Q ss_pred CChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHc------cCCHHHHHHHHHHhHHhhCCCCChHHHHHHHHHHhhcCCH
Q 003584 517 GKGKEALQFYDQMLARGTKPDYITFVGLLFACSH------AGLAENARWYFESMDKVYGIKPGPDHYACMIDLLGRSGKL 590 (809)
Q Consensus 517 g~~~~A~~l~~~m~~~g~~pd~~t~~~ll~a~~~------~g~~~~a~~~~~~m~~~~~~~p~~~~~~~li~~~~~~g~~ 590 (809)
+-+++++.++++....+. |-.......|.+|-. .-+|..-..+|+.+. .+.|++.+--.=.-+++..--.
T Consensus 270 ~lI~eg~all~rA~~~~~-pGPYqlqAAIaa~HA~a~~aedtDW~~I~aLYdaL~---~~apSPvV~LNRAVAla~~~Gp 345 (415)
T COG4941 270 ALIDEGLALLDRALASRR-PGPYQLQAAIAALHARARRAEDTDWPAIDALYDALE---QAAPSPVVTLNRAVALAMREGP 345 (415)
T ss_pred HHHHHHHHHHHHHHHcCC-CChHHHHHHHHHHHHhhcccCCCChHHHHHHHHHHH---HhCCCCeEeehHHHHHHHhhhH
Confidence 345788888888888764 888888877776632 235667777776665 3445442221112233334445
Q ss_pred HHHHHHHHhCcCCCC----HHHHHHHHHHHHhcCChhHHHHHHHHHhccCCCCC
Q 003584 591 IEAKALLDQMVGEPD----ATVWKALLSACRVHGDLELGERAANNLFELEPMNA 640 (809)
Q Consensus 591 ~eA~~~~~~m~~~p~----~~~~~~ll~a~~~~g~~~~A~~~~~~~~~~~p~~~ 640 (809)
+.++..++....+|. ...|..-...+.+.|+.++|...|++++.+.++..
T Consensus 346 ~agLa~ve~L~~~~~L~gy~~~h~~RadlL~rLgr~~eAr~aydrAi~La~~~a 399 (415)
T COG4941 346 AAGLAMVEALLARPRLDGYHLYHAARADLLARLGRVEEARAAYDRAIALARNAA 399 (415)
T ss_pred HhHHHHHHHhhcccccccccccHHHHHHHHHHhCChHHHHHHHHHHHHhcCChH
Confidence 666666666655432 22455556677888999999999999888877544
No 452
>KOG4507 consensus Uncharacterized conserved protein, contains TPR repeats [Function unknown]
Probab=31.22 E-value=1.9e+02 Score=32.15 Aligned_cols=126 Identities=13% Similarity=0.065 Sum_probs=83.4
Q ss_pred HHHHHHHHHhcCCCCeeechHHHH--HH-HhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHh
Q 003584 488 INDANRVFDSMHTRDVITWTALIM--GC-AQNGKGKEALQFYDQMLARGTKPDYITFVGLLFACSHAGLAENARWYFESM 564 (809)
Q Consensus 488 ~~~A~~~~~~~~~~~~~~~~~li~--~~-~~~g~~~~A~~l~~~m~~~g~~pd~~t~~~ll~a~~~~g~~~~a~~~~~~m 564 (809)
-+-|-.+|-.|..++...|-+|=. .| ...|+...|.+.+.........-..+....|.+...+.|.+.+|..++...
T Consensus 589 ~e~~~~~~~~~~~~~~p~w~~ln~aglywr~~gn~~~a~~cl~~a~~~~p~~~~v~~v~la~~~~~~~~~~da~~~l~q~ 668 (886)
T KOG4507|consen 589 EEIGSFLFHAINKPNAPIWLILNEAGLYWRAVGNSTFAIACLQRALNLAPLQQDVPLVNLANLLIHYGLHLDATKLLLQA 668 (886)
T ss_pred HHHHHHHHHHhcCCCCCeEEEeecccceeeecCCcHHHHHHHHHHhccChhhhcccHHHHHHHHHHhhhhccHHHHHHHH
Confidence 355667777788777776655422 23 346888999988887776322223356777778888888888888887665
Q ss_pred HHhhCCCCChHHHHHHHHHHhhcCCHHHHHHHHHhCcC-C-CCHHHHHHHHHH
Q 003584 565 DKVYGIKPGPDHYACMIDLLGRSGKLIEAKALLDQMVG-E-PDATVWKALLSA 615 (809)
Q Consensus 565 ~~~~~~~p~~~~~~~li~~~~~~g~~~eA~~~~~~m~~-~-p~~~~~~~ll~a 615 (809)
..-. ...+-++-.+..+|.-..+++.|++.|+.... . .+...-+.|...
T Consensus 669 l~~~--~sepl~~~~~g~~~l~l~~i~~a~~~~~~a~~~~~~~~~~~~~l~~i 719 (886)
T KOG4507|consen 669 LAIN--SSEPLTFLSLGNAYLALKNISGALEAFRQALKLTTKCPECENSLKLI 719 (886)
T ss_pred Hhhc--ccCchHHHhcchhHHHHhhhHHHHHHHHHHHhcCCCChhhHHHHHHH
Confidence 5431 33445566777888888889999998887664 2 344455555543
No 453
>KOG3507 consensus DNA-directed RNA polymerase, subunit RPB7.0 [Transcription]
Probab=31.05 E-value=15 Score=26.30 Aligned_cols=11 Identities=36% Similarity=1.053 Sum_probs=8.5
Q ss_pred cccCcchhHHH
Q 003584 766 LRVCGDCHTAM 776 (809)
Q Consensus 766 ~r~c~dch~~~ 776 (809)
..+|+|||.--
T Consensus 20 iYiCgdC~~en 30 (62)
T KOG3507|consen 20 IYICGDCGQEN 30 (62)
T ss_pred EEEeccccccc
Confidence 56899999643
No 454
>PF14376 Haem_bd: Haem-binding domain
Probab=30.13 E-value=15 Score=32.46 Aligned_cols=8 Identities=50% Similarity=1.269 Sum_probs=6.8
Q ss_pred ccCcchhH
Q 003584 767 RVCGDCHT 774 (809)
Q Consensus 767 r~c~dch~ 774 (809)
+-|.||||
T Consensus 42 ~~CydCHS 49 (137)
T PF14376_consen 42 NSCYDCHS 49 (137)
T ss_pred ccccccCC
Confidence 57999996
No 455
>COG2909 MalT ATP-dependent transcriptional regulator [Transcription]
Probab=29.69 E-value=1e+03 Score=28.32 Aligned_cols=252 Identities=13% Similarity=0.001 Sum_probs=121.6
Q ss_pred HhcCCHHHHHHHHhhcC----CCC-------HhHHHHHHHH-HHhcCCHHHHHHHHHHHhhc----CCccCHhHHHHHHH
Q 003584 382 AKQGNLDCAFMVFNLMQ----DKD-------VISWTSLITG-CAYHGSYEEALKYFSDMRIS----GICPDHVVVSSILS 445 (809)
Q Consensus 382 ~~~g~~~~A~~~f~~~~----~~~-------~~~~~~li~~-~~~~g~~~~A~~~~~~m~~~----g~~p~~~t~~~ll~ 445 (809)
....++++|..+..+.. .++ ...|+++-.. ....|++++|.++.+..... -..+..+.+..+..
T Consensus 426 ~s~~r~~ea~~li~~l~~~l~~~~~~~~~~l~ae~~aL~a~val~~~~~e~a~~lar~al~~L~~~~~~~r~~~~sv~~~ 505 (894)
T COG2909 426 ASQHRLAEAETLIARLEHFLKAPMHSRQGDLLAEFQALRAQVALNRGDPEEAEDLARLALVQLPEAAYRSRIVALSVLGE 505 (894)
T ss_pred HHccChHHHHHHHHHHHHHhCcCcccchhhHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhcccccchhhhhhhhhhhH
Confidence 34566777777666543 221 1346655433 33467788888777766543 12233444555555
Q ss_pred HHhcccchhHHHHHHHHHHHhCCCCChhHHhHH-----HHHHHhcCCHH--HHHHHHHhcC-----CCCe-----eechH
Q 003584 446 ACAELTVLEFGQQVHAVFLKSGGCSSLSVDNSL-----VLVYAKCGCIN--DANRVFDSMH-----TRDV-----ITWTA 508 (809)
Q Consensus 446 a~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~l-----i~~y~k~g~~~--~A~~~~~~~~-----~~~~-----~~~~~ 508 (809)
+..-.|++++|..+.+...+..-..++..+..+ ...+...|+.. +....|.... +... .....
T Consensus 506 a~~~~G~~~~Al~~~~~a~~~a~~~~~~~l~~~~~~~~s~il~~qGq~~~a~~~~~~~~~~~q~l~q~~~~~f~~~~r~~ 585 (894)
T COG2909 506 AAHIRGELTQALALMQQAEQMARQHDVYHLALWSLLQQSEILEAQGQVARAEQEKAFNLIREQHLEQKPRHEFLVRIRAQ 585 (894)
T ss_pred HHHHhchHHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHhhhcccchhHHHHHHH
Confidence 666678888888777776655333333333222 22334456322 2233333222 1111 22233
Q ss_pred HHHHHHh-cCChHHHHHHHHHHHHCCCCCCHHHH--HHHHHHHHccCCHHHHHHHHHHhHHhhCCCC--Ch--HHHHHHH
Q 003584 509 LIMGCAQ-NGKGKEALQFYDQMLARGTKPDYITF--VGLLFACSHAGLAENARWYFESMDKVYGIKP--GP--DHYACMI 581 (809)
Q Consensus 509 li~~~~~-~g~~~~A~~l~~~m~~~g~~pd~~t~--~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p--~~--~~~~~li 581 (809)
+..++.+ .+...+|..-++--......|-.... ..|.......|+.++|....+++..- ...+ .+ ..-.+.+
T Consensus 586 ll~~~~r~~~~~~ear~~~~~~~~~~~~~~~~~~~~~~LA~l~~~~Gdl~~A~~~l~~~~~l-~~~~~~~~~~~a~~~~v 664 (894)
T COG2909 586 LLRAWLRLDLAEAEARLGIEVGSVYTPQPLLSRLALSMLAELEFLRGDLDKALAQLDELERL-LLNGQYHVDYLAAAYKV 664 (894)
T ss_pred HHHHHHHHhhhhHHhhhcchhhhhcccchhHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHH-hcCCCCCchHHHHHHHh
Confidence 3333333 12222222222222222222222222 25666777889999999888887654 2222 11 1122222
Q ss_pred --HHHhhcCCHHHHHHHHHhCcCC------CCHHHHHHHHHHHHhcCChhHHHHHHHHHhc
Q 003584 582 --DLLGRSGKLIEAKALLDQMVGE------PDATVWKALLSACRVHGDLELGERAANNLFE 634 (809)
Q Consensus 582 --~~~~~~g~~~eA~~~~~~m~~~------p~~~~~~~ll~a~~~~g~~~~A~~~~~~~~~ 634 (809)
..-...|+.++|.....+-... --...|..+...-...|-..+++.....+.+
T Consensus 665 ~~~lwl~qg~~~~a~~~l~~s~~~~~~~~~~~~~~~r~i~~~~~~Lg~~~eae~al~~l~~ 725 (894)
T COG2909 665 KLILWLAQGDKELAAEWLLKSGDPDKANAHFPQLQWRLIAREQILLGILLEAELALDELAS 725 (894)
T ss_pred hHHHhcccCCHHHHHHHHHhccCchhhhhhcccccccccchHHHHHhhhhHHHHHHHHHhh
Confidence 2345678888887777663311 1111344333444444555555555554433
No 456
>KOG1308 consensus Hsp70-interacting protein Hip/Transient component of progesterone receptor complexes and an Hsp70-binding protein [Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=29.35 E-value=26 Score=35.80 Aligned_cols=61 Identities=16% Similarity=0.166 Sum_probs=51.9
Q ss_pred HhcCChhHHHHHHHHHhccCCCCCccHHhHhhhhhhcCChhHHHHHHHHHHhCCCccCCce
Q 003584 617 RVHGDLELGERAANNLFELEPMNAMPYVQLSNMYSTAGKWEDAARVRKLMKSRGIRKEPGC 677 (809)
Q Consensus 617 ~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~ 677 (809)
...|.++.|++.+..+++++|.....|..-++++.+.+++..|++-.....+.+.....++
T Consensus 125 ln~G~~~~ai~~~t~ai~lnp~~a~l~~kr~sv~lkl~kp~~airD~d~A~ein~Dsa~~y 185 (377)
T KOG1308|consen 125 LNDGEFDTAIELFTSAIELNPPLAILYAKRASVFLKLKKPNAAIRDCDFAIEINPDSAKGY 185 (377)
T ss_pred hcCcchhhhhcccccccccCCchhhhcccccceeeeccCCchhhhhhhhhhccCccccccc
Confidence 3567899999999999999999999999999999999999999998888776655444443
No 457
>PF09670 Cas_Cas02710: CRISPR-associated protein (Cas_Cas02710)
Probab=28.66 E-value=5.4e+02 Score=27.51 Aligned_cols=54 Identities=11% Similarity=0.019 Sum_probs=39.5
Q ss_pred HHHccCCHHHHHHHHHHhHHhhCCCCChH--HHHHHHHHHhh--cCCHHHHHHHHHhCcC
Q 003584 547 ACSHAGLAENARWYFESMDKVYGIKPGPD--HYACMIDLLGR--SGKLIEAKALLDQMVG 602 (809)
Q Consensus 547 a~~~~g~~~~a~~~~~~m~~~~~~~p~~~--~~~~li~~~~~--~g~~~eA~~~~~~m~~ 602 (809)
...+.+++..|.++++.+... +.++.. .|..+..+|.. .-++++|.+.++....
T Consensus 140 ~l~n~~~y~aA~~~l~~l~~r--l~~~~~~~~~~~l~~~y~~WD~fd~~~A~~~l~~~~~ 197 (379)
T PF09670_consen 140 ELFNRYDYGAAARILEELLRR--LPGREEYQRYKDLCEGYDAWDRFDHKEALEYLEKLLK 197 (379)
T ss_pred HHHhcCCHHHHHHHHHHHHHh--CCchhhHHHHHHHHHHHHHHHccCHHHHHHHHHHHHH
Confidence 345778999999999999864 555554 55566666654 4578899999988763
No 458
>PF14863 Alkyl_sulf_dimr: Alkyl sulfatase dimerisation; PDB: 2YHE_C 2CG2_A 2CG3_A 2CFU_A 2CFZ_A.
Probab=27.83 E-value=1.4e+02 Score=26.50 Aligned_cols=63 Identities=17% Similarity=0.091 Sum_probs=40.8
Q ss_pred HHHHHHHHhCcCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHhccCCCCCccHHhHhhhhhhcCCh
Q 003584 591 IEAKALLDQMVGEPDATVWKALLSACRVHGDLELGERAANNLFELEPMNAMPYVQLSNMYSTAGKW 656 (809)
Q Consensus 591 ~eA~~~~~~m~~~p~~~~~~~ll~a~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~ 656 (809)
+.|.++.+-|- .....-.........|++..|.++.+.++..+|+|..+-...+++|...|.-
T Consensus 58 ~~A~~~v~l~G---G~d~vl~~A~~~~~~gd~~wA~~L~d~l~~adp~n~~ar~l~A~al~~lg~~ 120 (141)
T PF14863_consen 58 EEAKRYVELAG---GADKVLERAQAALAAGDYQWAAELLDHLVFADPDNEEARQLKADALEQLGYQ 120 (141)
T ss_dssp HHHHHHHHHTT---CHHHHHHHHHHHHHCT-HHHHHHHHHHHHHH-TT-HHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHcC---CHHHHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHHHHh
Confidence 44555555543 2233334455567789999999999999999999988877777776655543
No 459
>KOG3364 consensus Membrane protein involved in organellar division [Cell wall/membrane/envelope biogenesis]
Probab=27.69 E-value=4.3e+02 Score=23.37 Aligned_cols=70 Identities=19% Similarity=0.145 Sum_probs=42.2
Q ss_pred CChHHHHHHHHHHhhcCCH---HHHHHHHHhCcC--CCC--HHHHHHHHHHHHhcCChhHHHHHHHHHhccCCCCCc
Q 003584 572 PGPDHYACMIDLLGRSGKL---IEAKALLDQMVG--EPD--ATVWKALLSACRVHGDLELGERAANNLFELEPMNAM 641 (809)
Q Consensus 572 p~~~~~~~li~~~~~~g~~---~eA~~~~~~m~~--~p~--~~~~~~ll~a~~~~g~~~~A~~~~~~~~~~~p~~~~ 641 (809)
++..+--.+.-++.+..+. .+.+.+++.... .|+ ....--|.-++.+.++++.+.+..+.+++.+|+|..
T Consensus 30 ~s~~s~f~lAwaLV~S~~~~dv~~GI~iLe~l~~~~~~~~rRe~lyYLAvg~yRlkeY~~s~~yvd~ll~~e~~n~Q 106 (149)
T KOG3364|consen 30 VSKQSQFNLAWALVRSRDTEDVQEGIVILEDLLKSAHPERRRECLYYLAVGHYRLKEYSKSLRYVDALLETEPNNRQ 106 (149)
T ss_pred chHHHHHHHHHHHHcccchHHHHHhHHHHHHHhhhcCcccchhhhhhhHHHHHHHhhHHHHHHHHHHHHhhCCCcHH
Confidence 3333333444445544433 334445544442 222 223334666889999999999999999999998753
No 460
>COG5431 Uncharacterized metal-binding protein [Function unknown]
Probab=27.63 E-value=18 Score=29.33 Aligned_cols=12 Identities=42% Similarity=1.066 Sum_probs=9.5
Q ss_pred cccCCcCCCCCC
Q 003584 797 HFKAGNCSCGDY 808 (809)
Q Consensus 797 ~f~~g~csc~~~ 808 (809)
-.+.|.|||.||
T Consensus 46 Il~~gfCSCp~~ 57 (117)
T COG5431 46 ILEGGFCSCPDF 57 (117)
T ss_pred EEEcCcccCHHH
Confidence 456789999886
No 461
>KOG3807 consensus Predicted membrane protein ST7 (tumor suppressor in humans) [General function prediction only]
Probab=27.52 E-value=5.6e+02 Score=26.30 Aligned_cols=103 Identities=17% Similarity=0.223 Sum_probs=53.6
Q ss_pred cccchhHHHHHHHHHHHhCCCCChhHHhHHHHHHHhcCCHHHHHHHHHhcCCCC--eeec--hHHHHHHHhcCChHHHHH
Q 003584 449 ELTVLEFGQQVHAVFLKSGGCSSLSVDNSLVLVYAKCGCINDANRVFDSMHTRD--VITW--TALIMGCAQNGKGKEALQ 524 (809)
Q Consensus 449 ~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~y~k~g~~~~A~~~~~~~~~~~--~~~~--~~li~~~~~~g~~~~A~~ 524 (809)
...-+.+|+.+++.+++.+- . .|-+..+...--...+.+.++| +.+| ..+..+-.+.|+..+|.+
T Consensus 228 Ea~Ti~~AE~l~k~ALka~e----~-------~yr~sqq~qh~~~~~da~~rRDtnvl~YIKRRLAMCARklGrlrEA~K 296 (556)
T KOG3807|consen 228 EATTIVDAERLFKQALKAGE----T-------IYRQSQQCQHQSPQHEAQLRRDTNVLVYIKRRLAMCARKLGRLREAVK 296 (556)
T ss_pred hhhhHHHHHHHHHHHHHHHH----H-------HHhhHHHHhhhccchhhhhhcccchhhHHHHHHHHHHHHhhhHHHHHH
Confidence 34456677788877777551 1 1222222222112223333343 3333 223444456788888988
Q ss_pred HHHHHHHCCCCCCHH---HHHHHHHHHHccCCHHHHHHHHHHh
Q 003584 525 FYDQMLARGTKPDYI---TFVGLLFACSHAGLAENARWYFESM 564 (809)
Q Consensus 525 l~~~m~~~g~~pd~~---t~~~ll~a~~~~g~~~~a~~~~~~m 564 (809)
.|+.+.+. .|-.. ....|+.+|....-+.+...++.+.
T Consensus 297 ~~RDL~ke--~pl~t~lniheNLiEalLE~QAYADvqavLakY 337 (556)
T KOG3807|consen 297 IMRDLMKE--FPLLTMLNIHENLLEALLELQAYADVQAVLAKY 337 (556)
T ss_pred HHHHHhhh--ccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 88887764 33221 2335677776665555555555433
No 462
>COG5159 RPN6 26S proteasome regulatory complex component [Posttranslational modification, protein turnover, chaperones]
Probab=27.06 E-value=6.6e+02 Score=25.32 Aligned_cols=141 Identities=15% Similarity=0.132 Sum_probs=0.0
Q ss_pred HHHHHHhcCCHHHHHHHHHHHhhcCCccCHhHHHHHHHHHhcccchhHHHHHHHHHHHhCCCCChhHHhHHHHHHHhcCC
Q 003584 408 LITGCAYHGSYEEALKYFSDMRISGICPDHVVVSSILSACAELTVLEFGQQVHAVFLKSGGCSSLSVDNSLVLVYAKCGC 487 (809)
Q Consensus 408 li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~y~k~g~ 487 (809)
+.+-..+.+++++|+..+.+....|+..|..+. .....+..-+.+.|...|+
T Consensus 9 ~a~~~v~~~~~~~ai~~yk~iL~kg~s~dek~~----------------------------nEqE~tvlel~~lyv~~g~ 60 (421)
T COG5159 9 LANNAVKSNDIEKAIGEYKRILGKGVSKDEKTL----------------------------NEQEATVLELFKLYVSKGD 60 (421)
T ss_pred HHHHhhhhhhHHHHHHHHHHHhcCCCChhhhhh----------------------------hHHHHHHHHHHHHHHhcCC
Q ss_pred HHHHHHHHHhcCCCCeeechHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHhHHh
Q 003584 488 INDANRVFDSMHTRDVITWTALIMGCAQNGKGKEALQFYDQMLARGTKPDYITFVGLLFACSHAGLAENARWYFESMDKV 567 (809)
Q Consensus 488 ~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~pd~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~ 567 (809)
...-.+..... .-.+.-+.+..-..-...++++... .+.+..--.-++.+|..-.+-+.-.-+-..+..+
T Consensus 61 ~~~l~~~i~~s--------re~m~~ftk~k~~KiirtLiekf~~--~~dsl~dqi~v~~~~iewA~rEkr~fLr~~Le~K 130 (421)
T COG5159 61 YCSLGDTITSS--------REAMEDFTKPKITKIIRTLIEKFPY--SSDSLEDQIKVLTALIEWADREKRKFLRLELECK 130 (421)
T ss_pred cchHHHHHHhh--------HHHHHHhcchhHHHHHHHHHHhcCC--CCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_pred hCCCCChHHHHHHHHHHhhcCCHHHHHHHHH
Q 003584 568 YGIKPGPDHYACMIDLLGRSGKLIEAKALLD 598 (809)
Q Consensus 568 ~~~~p~~~~~~~li~~~~~~g~~~eA~~~~~ 598 (809)
++.++.+.|++.+|+.+++
T Consensus 131 ------------li~l~y~~~~YsdalalIn 149 (421)
T COG5159 131 ------------LIYLLYKTGKYSDALALIN 149 (421)
T ss_pred ------------HHHHHHhcccHHHHHHHHH
No 463
>smart00544 MA3 Domain in DAP-5, eIF4G, MA-3 and other proteins. Highly alpha-helical. May contain repeats and/or regions similar to MIF4G domains Ponting (TIBS) "Novel eIF4G domain homologues" in press
Probab=26.64 E-value=3.8e+02 Score=22.41 Aligned_cols=22 Identities=23% Similarity=0.384 Sum_probs=10.1
Q ss_pred HHHHHHhcCCHHHHHHHHhhcC
Q 003584 377 LIDMYAKQGNLDCAFMVFNLMQ 398 (809)
Q Consensus 377 li~~y~~~g~~~~A~~~f~~~~ 398 (809)
++.-|...|++++|...+.++.
T Consensus 8 ~l~ey~~~~D~~ea~~~l~~L~ 29 (113)
T smart00544 8 IIEEYLSSGDTDEAVHCLLELK 29 (113)
T ss_pred HHHHHHHcCCHHHHHHHHHHhC
Confidence 3334444444554444444443
No 464
>PF08311 Mad3_BUB1_I: Mad3/BUB1 homology region 1; InterPro: IPR013212 Proteins containing this domain are checkpoint proteins involved in cell division. This region has been shown to be essential for the binding of BUB1 and MAD3 to CDC20p [].; PDB: 3ESL_B 4AEZ_I 4A1G_B 2LAH_A 2WVI_A 3SI5_B.
Probab=26.58 E-value=2.9e+02 Score=24.01 Aligned_cols=42 Identities=14% Similarity=0.243 Sum_probs=32.6
Q ss_pred HHHHHHHHHhc--cCCCCCccHHhHhhhhhhcCChhHHHHHHHH
Q 003584 624 LGERAANNLFE--LEPMNAMPYVQLSNMYSTAGKWEDAARVRKL 665 (809)
Q Consensus 624 ~A~~~~~~~~~--~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~ 665 (809)
.+..+|+.|.. +.-..+..|...+..+...|++++|.++++.
T Consensus 81 ~~~~if~~l~~~~IG~~~A~fY~~wA~~le~~~~~~~A~~I~~~ 124 (126)
T PF08311_consen 81 DPREIFKFLYSKGIGTKLALFYEEWAEFLEKRGNFKKADEIYQL 124 (126)
T ss_dssp HHHHHHHHHHHHTTSTTBHHHHHHHHHHHHHTT-HHHHHHHHHH
T ss_pred CHHHHHHHHHHcCccHHHHHHHHHHHHHHHHcCCHHHHHHHHHh
Confidence 77788887765 4566677888888899999999999888875
No 465
>PF02847 MA3: MA3 domain; InterPro: IPR003891 This entry represents the MI domain (after MA-3 and eIF4G), it is a protein-protein interaction module of ~130 amino acids [, , ]. It appears in several translation factors and is found in: One copy in plant and animal eIF4G 1 and 2 (DAP-5/NAT1/p97) Two copies in the animal programmed cell death protein 4 (PDCD4) or MA-3 that is induced during programmed cell death and inhibits neoplastic transformation Four tandem-repeated copies in a group of uncharacterised plant proteins The MI domain consists of seven alpha-helices, which pack into a globular form. The packing arrangement consists of repeating pairs of antiparallel helices packed one upon the other such that a superhelical axis is generated perpendicular to the alpha-helical axes []. The MI domain has also been named MA3 domain.; PDB: 2ION_A 2IOL_B 2NSZ_A 3EIQ_C 2HM8_A 2KZT_B 2IOS_A 2RG8_B 2ZU6_E 3EIJ_A ....
Probab=26.53 E-value=2.1e+02 Score=24.05 Aligned_cols=23 Identities=17% Similarity=0.284 Sum_probs=10.7
Q ss_pred HHHHHHhcCCHHHHHHHHhhcCC
Q 003584 377 LIDMYAKQGNLDCAFMVFNLMQD 399 (809)
Q Consensus 377 li~~y~~~g~~~~A~~~f~~~~~ 399 (809)
++.-|...|+.++|...+.++..
T Consensus 8 ~l~ey~~~~d~~ea~~~l~el~~ 30 (113)
T PF02847_consen 8 ILMEYFSSGDVDEAVECLKELKL 30 (113)
T ss_dssp HHHHHHHHT-HHHHHHHHHHTT-
T ss_pred HHHHHhcCCCHHHHHHHHHHhCC
Confidence 34445555555555555555433
No 466
>COG4855 Uncharacterized protein conserved in archaea [Function unknown]
Probab=25.96 E-value=26 Score=25.78 Aligned_cols=10 Identities=50% Similarity=1.272 Sum_probs=9.1
Q ss_pred cCcchhHHHH
Q 003584 768 VCGDCHTAMK 777 (809)
Q Consensus 768 ~c~dch~~~k 777 (809)
+|.-||+++|
T Consensus 65 lC~~C~~a~~ 74 (76)
T COG4855 65 LCVECHEAIK 74 (76)
T ss_pred eeHHHHHHhh
Confidence 7999999987
No 467
>COG4976 Predicted methyltransferase (contains TPR repeat) [General function prediction only]
Probab=25.67 E-value=1.1e+02 Score=29.49 Aligned_cols=56 Identities=23% Similarity=0.252 Sum_probs=50.2
Q ss_pred HHhcCChhHHHHHHHHHhccCCCCCccHHhHhhhhhhcCChhHHHHHHHHHHhCCC
Q 003584 616 CRVHGDLELGERAANNLFELEPMNAMPYVQLSNMYSTAGKWEDAARVRKLMKSRGI 671 (809)
Q Consensus 616 ~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~ 671 (809)
....|+.+.+-+++.+++++-|+....+..++..-.++|+.+.|.+.+++..+...
T Consensus 5 ~~~~~D~~aaaely~qal~lap~w~~gwfR~g~~~ekag~~daAa~a~~~~L~ldp 60 (287)
T COG4976 5 LAESGDAEAAAELYNQALELAPEWAAGWFRLGEYTEKAGEFDAAAAAYEEVLELDP 60 (287)
T ss_pred hcccCChHHHHHHHHHHhhcCchhhhhhhhcchhhhhcccHHHHHHHHHHHHcCCc
Confidence 35678899999999999999999999999999999999999999999998876543
No 468
>cd08323 CARD_APAF1 Caspase activation and recruitment domain similar to that found in Apoptotic Protease-Activating Factor 1. Caspase activation and recruitment domain (CARD) similar to that found in apoptotic protease-activating factor 1 (APAF-1), which is an activator of caspase-9. APAF-1 contains WD-40 repeats, a CARD, and an ATPase domain. Upon stimulation, APAF-1, together with caspase-9, forms the heptameric 'apoptosome', which leads to the processing and activation of caspase-9, starting a caspase cascade which leads to apoptosis. In general, CARDs are death domains (DDs) found associated with caspases. They are known to be important in the signaling pathways for apoptosis, inflammation, and host-defense mechanisms. DDs are protein-protein interaction domains found in a variety of domain architectures. Their common feature is that they form homodimers by self-association or heterodimers by associating with other members of the DD superfamily including PYRIN and DED (Death Effect
Probab=25.41 E-value=2e+02 Score=23.06 Aligned_cols=59 Identities=14% Similarity=0.095 Sum_probs=40.3
Q ss_pred HHHHhcCCCCcchHHHHHHHHHccCChhHHHHHhhhCCCCCcchHHHHHHHHHcCCCch
Q 003584 57 QLFEKMSDRDGFTWNTMIAAYANSGRLREAKKLFNETPFKNFFTWSSLIYGYSNYGLDI 115 (809)
Q Consensus 57 ~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~f~~~~~~~~~~~~~li~~~~~~g~~~ 115 (809)
.+++.+.+.++.+-.-.=..-++..+-+.|+++.+-++.++..+|.+...++-..|...
T Consensus 18 ~ild~L~~~gvlt~~~~e~I~~~~t~~~qa~~Lld~L~trG~~Af~~F~~aL~~~~~~~ 76 (86)
T cd08323 18 YIMDHMISDGVLTLDEEEKVKSKATQKEKAVMLINMILTKDNHAYVSFYNALLHEGYKD 76 (86)
T ss_pred HHHHHHHhcCCCCHHHHHHHHcCCChHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCChH
Confidence 34555555566555554444556677888888888888888888888888876655433
No 469
>COG3043 NapB Nitrate reductase cytochrome c-type subunit [Energy production and conversion]
Probab=25.28 E-value=45 Score=29.25 Aligned_cols=24 Identities=25% Similarity=0.311 Sum_probs=19.2
Q ss_pred EEEEcccccCcchhHHHHHHhhhhce
Q 003584 760 IRIFKNLRVCGDCHTAMKYISAVYLR 785 (809)
Q Consensus 760 ~~i~kn~r~c~dch~~~k~~s~~~~r 785 (809)
++|.||.-.|--||+.- +|+.+|-
T Consensus 80 Yqvtkn~N~CLsCH~~e--~s~~tGA 103 (155)
T COG3043 80 YQVTKNTNRCLSCHSVE--NSRTTGA 103 (155)
T ss_pred ceeecccchhhhccCHH--HHhhcCC
Confidence 79999999999999854 5555554
No 470
>PF07575 Nucleopor_Nup85: Nup85 Nucleoporin; InterPro: IPR011502 This is a family of nucleoporins conserved from yeast to human. Nup85 Nucleoporin is an essential component of the nuclear pore complex (NPC) that seems to be required for NPC assembly and maintenance. As part of the NPC Nup107-160 subcomplex plays a role in RNA export and in tethering NUP98/Nup98 and NUP153 to the nucleus. The Nup107-160 complex seems to be required for spindle assembly during mitosis. NUP85 is required for membrane clustering of CCL2-activated CCR2. Seems to be involved in CCR2-mediated chemotaxis of monocytes and may link activated CCR2 to the phosphatidyl-inositol-3-kinase-Rac-lammellipodium protrusion cascade [, , ]. ; PDB: 3F3F_D 3F3P_G 3F3G_G 3EWE_B.
Probab=24.92 E-value=7.1e+02 Score=28.36 Aligned_cols=58 Identities=12% Similarity=0.130 Sum_probs=19.8
Q ss_pred CHhHHHHHHHHHhcccchhHHHHHHHHHHHhCCCCChhHHhHHHHHHHhcCCHHHHHHHH
Q 003584 436 DHVVVSSILSACAELTVLEFGQQVHAVFLKSGGCSSLSVDNSLVLVYAKCGCINDANRVF 495 (809)
Q Consensus 436 ~~~t~~~ll~a~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~y~k~g~~~~A~~~~ 495 (809)
+.....-++..|.+.|..+.+..+...+-..-.. ..-|..-+..+.++|+.+....+-
T Consensus 404 t~~~~~k~l~iC~~~~L~~~a~~I~~~~~~~~~~--~~~~g~AL~~~~ra~d~~~v~~i~ 461 (566)
T PF07575_consen 404 TNDDAEKLLEICAELGLEDVAREICKILGQRLLK--EGRYGEALSWFIRAGDYSLVTRIA 461 (566)
T ss_dssp SHHHHHHHHHHHHHHT-HHHHHHHHHHHHHHHHH--HHHHHHHHHHHH------------
T ss_pred chHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHH--CCCHHHHHHHHHHCCCHHHHHHHH
Confidence 3444455555555555555555555443322111 112333344455555555444433
No 471
>KOG4642 consensus Chaperone-dependent E3 ubiquitin protein ligase (contains TPR repeats) [Posttranslational modification, protein turnover, chaperones]
Probab=24.64 E-value=6.8e+02 Score=24.65 Aligned_cols=112 Identities=12% Similarity=-0.011 Sum_probs=65.7
Q ss_pred cCCHHHHHHHHHhcC--CCCee-echHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHH-HHHHHHHHHHccCCHHHHHHH
Q 003584 485 CGCINDANRVFDSMH--TRDVI-TWTALIMGCAQNGKGKEALQFYDQMLARGTKPDYI-TFVGLLFACSHAGLAENARWY 560 (809)
Q Consensus 485 ~g~~~~A~~~~~~~~--~~~~~-~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~pd~~-t~~~ll~a~~~~g~~~~a~~~ 560 (809)
..+++.|...+.+.. .|++. -|+.-+..+.+..+++.+..--.+.++ +.||.+ ....+..+......+++|+..
T Consensus 23 ~k~y~~ai~~y~raI~~nP~~~~Y~tnralchlk~~~~~~v~~dcrralq--l~~N~vk~h~flg~~~l~s~~~~eaI~~ 100 (284)
T KOG4642|consen 23 PKRYDDAIDCYSRAICINPTVASYYTNRALCHLKLKHWEPVEEDCRRALQ--LDPNLVKAHYFLGQWLLQSKGYDEAIKV 100 (284)
T ss_pred hhhhchHHHHHHHHHhcCCCcchhhhhHHHHHHHhhhhhhhhhhHHHHHh--cChHHHHHHHHHHHHHHhhccccHHHHH
Confidence 345555655555443 55553 456667777778888888777776666 678776 444555566777788888887
Q ss_pred HHHhHHh---hCCCCChHHHHHHHHHHhhcCCHHHHHHHHH
Q 003584 561 FESMDKV---YGIKPGPDHYACMIDLLGRSGKLIEAKALLD 598 (809)
Q Consensus 561 ~~~m~~~---~~~~p~~~~~~~li~~~~~~g~~~eA~~~~~ 598 (809)
+++.... ..+.|.......|-++--..-...++..+.+
T Consensus 101 Lqra~sl~r~~~~~~~~di~~~L~~ak~~~w~v~e~~Ri~Q 141 (284)
T KOG4642|consen 101 LQRAYSLLREQPFTFGDDIPKALRDAKKKRWEVSEEKRIRQ 141 (284)
T ss_pred HHHHHHHHhcCCCCCcchHHHHHHHHHhCccchhHHHHHHH
Confidence 7765322 2344444555555544333333444444433
No 472
>COG3058 FdhE Uncharacterized protein involved in formate dehydrogenase formation [Posttranslational modification, protein turnover, chaperones]
Probab=24.63 E-value=40 Score=33.12 Aligned_cols=19 Identities=26% Similarity=0.567 Sum_probs=14.6
Q ss_pred ccCcchhHHHHHHhhhhce
Q 003584 767 RVCGDCHTAMKYISAVYLR 785 (809)
Q Consensus 767 r~c~dch~~~k~~s~~~~r 785 (809)
-.|+|||+.+|.+=.-.++
T Consensus 253 EtC~~C~sYlKilyqekdp 271 (308)
T COG3058 253 ETCGDCNSYLKILYQEKDP 271 (308)
T ss_pred hcCCcHHHHHHHHHHhcCC
Confidence 4799999999988654433
No 473
>PF10475 DUF2450: Protein of unknown function N-terminal domain (DUF2450) ; InterPro: IPR019515 This entry represents Vacuolar protein sorting-associated protein 54, and is thought to be involved in retrograde transport from early and late endosomes to late Golgi found in eukaryotes, but its function is not known.
Probab=24.53 E-value=4.4e+02 Score=26.88 Aligned_cols=52 Identities=17% Similarity=0.231 Sum_probs=33.9
Q ss_pred HHHHHHhcCCHHHHHHHHhhcCCCCHhHHHHHHHHHHhcCCHHHHHHHHHHHhh
Q 003584 377 LIDMYAKQGNLDCAFMVFNLMQDKDVISWTSLITGCAYHGSYEEALKYFSDMRI 430 (809)
Q Consensus 377 li~~y~~~g~~~~A~~~f~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~ 430 (809)
++..+.+.+++......+..+. .+..-...+..+...|++..|++++.+.++
T Consensus 104 Il~~~rkr~~l~~ll~~L~~i~--~v~~~~~~l~~ll~~~dy~~Al~li~~~~~ 155 (291)
T PF10475_consen 104 ILRLQRKRQNLKKLLEKLEQIK--TVQQTQSRLQELLEEGDYPGALDLIEECQQ 155 (291)
T ss_pred HHHHHHHHHHHHHHHHHHHHHH--HHHHHHHHHHHHHhcCCHHHHHHHHHHHHH
Confidence 4455555555555555555552 334445567777888999999988887765
No 474
>KOG4334 consensus Uncharacterized conserved protein, contains double-stranded RNA-binding motif and WW domain [General function prediction only]
Probab=24.12 E-value=55 Score=34.81 Aligned_cols=145 Identities=11% Similarity=0.052 Sum_probs=79.4
Q ss_pred CCCCCcccHHHHHHHhhcCCCchHHHHHHHHHHHhCCCCchHHHHH--HHHhhhcCCChhHHHHHhhhCCCC-CC-----
Q 003584 128 GYRPSQYTLDNVLRLCSLKGLLQRGEQFHGYAIKTCFDLNAFVVTG--LVDMYAKCKCIFEAEYLFKMFPDG-KN----- 199 (809)
Q Consensus 128 g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~--li~~y~~~g~~~~A~~~f~~~~~~-~~----- 199 (809)
|+.||.++|.+=..+-.+......|+..+..++ ||...... -=..-...|.-..-+.+|+.+.-. |.
T Consensus 410 ~v~~d~~~yGsG~g~sKK~Ak~~AAR~tLeiLI-----Pd~~~~~~n~~d~k~~~~~k~q~~le~F~~I~Iedprv~e~c 484 (650)
T KOG4334|consen 410 GVLPDLFPYGSGVGASKKTAKLVAARDTLEILI-----PDLRVSEDNVCDGKVEEDGKQQGFLELFKKIKIEDPRVVEMC 484 (650)
T ss_pred cccccccccccccccchHHHHHHHHHHHHHHhc-----chhhhcccccccccccccccchhHHHHhhcccccCchHHHHh
Confidence 566777666654444444445555665555443 33222211 000011123344457788876541 22
Q ss_pred -----cccHHHHHHHHhhCCChHHHHHHHHHHHHCCCCCCcchHHHHHHHHhc------cCChHHHHHHHHHHHHhCCCC
Q 003584 200 -----HVAWTTMITGYSQNGYGFKAIECFRDMRVEGVESNQFTFPSILTACAA------VSARDFGAQVHGCILSSGFEA 268 (809)
Q Consensus 200 -----~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~~~~~------~~~~~~a~~~~~~~~~~g~~~ 268 (809)
...|+.|..++.++-.+.+ +.+=.+|...|-.-+.+ +-+|.+ ..+...|.++-.+.+-.-+.|
T Consensus 485 tk~~~psPy~iL~~cl~Rn~g~~d-~~ik~E~i~~~nqkse~-----im~~Gkht~~~~cknkr~gkQlASQ~ilq~lHP 558 (650)
T KOG4334|consen 485 TKCAIPSPYNILRDCLSRNLGWND-LVIKKEMIGNGNQKSEV-----IMILGKHTEEAECKNKRQGKQLASQRILQKLHP 558 (650)
T ss_pred hhcCCCCHHHHHHHHHHhhcCCcc-eeeeeeccCCCCcccee-----EeeeccceeeeeeechhHHHHHHHHHHHHHhCH
Confidence 2357888888877765531 22223444333333333 223322 235677888888777777789
Q ss_pred chhHHHHHHHHHHhC
Q 003584 269 NVYVQSALIDMYAKC 283 (809)
Q Consensus 269 ~~~~~~~Li~~y~~~ 283 (809)
...+|.+|+++|.+.
T Consensus 559 h~~twGSlLriYGr~ 573 (650)
T KOG4334|consen 559 HLLTWGSLLRIYGRL 573 (650)
T ss_pred HhhhHHHHHHHhhhh
Confidence 999999999999876
No 475
>PRK10564 maltose regulon periplasmic protein; Provisional
Probab=23.83 E-value=1e+02 Score=31.22 Aligned_cols=36 Identities=22% Similarity=0.230 Sum_probs=25.3
Q ss_pred HHHHHHHHhhCCChHHHHHHHHHHHHCCCCCCcchH
Q 003584 203 WTTMITGYSQNGYGFKAIECFRDMRVEGVESNQFTF 238 (809)
Q Consensus 203 ~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~ 238 (809)
||..|..-++.|+.++|+.++++..+.|+.--..||
T Consensus 260 y~~aI~~AVk~gDi~KAL~LldEAe~LG~~~Ar~tF 295 (303)
T PRK10564 260 FNQAIKQAVKKGDVDKALKLLDEAERLGSTSARSTF 295 (303)
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHhCCchHHHHH
Confidence 567777778888888888888887777755433333
No 476
>PF11663 Toxin_YhaV: Toxin with endonuclease activity YhaV; InterPro: IPR021679 YhaV causes reversible bacteriostasis and is part of a toxin-antitoxin system in Escherichia coli along with PrlF. The toxicity of YhaV is counteracted by PrlF by the formation of a tight complex which binds to the promoter of the prlF-yhaV operon. In vitro, YhaV also has endonuclease activity [].
Probab=23.81 E-value=55 Score=28.53 Aligned_cols=41 Identities=27% Similarity=0.396 Sum_probs=28.3
Q ss_pred echHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHH
Q 003584 505 TWTALIMGCAQNGKGKEALQFYDQMLARGTKPDYITFVGLLFA 547 (809)
Q Consensus 505 ~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~pd~~t~~~ll~a 547 (809)
.|-.=-......|.-.+|..+|++|++.|-+||.. +.|+.+
T Consensus 97 aWvNDe~tlR~ygsk~DaY~VF~kML~~G~pPddW--~~Ll~~ 137 (140)
T PF11663_consen 97 AWVNDEQTLRAYGSKTDAYAVFRKMLERGNPPDDW--DALLKE 137 (140)
T ss_pred EEeCCCcchhhhccCCcHHHHHHHHHhCCCCCccH--HHHHHH
Confidence 45432223445577788999999999999999863 445543
No 477
>PF12796 Ank_2: Ankyrin repeats (3 copies); InterPro: IPR020683 This entry represents the ankyrin repeat-containing domain. These domains contain multiple repeats of a beta(2)-alpha(2) motif. The ankyrin repeat is one of the most common protein-protein interaction motifs in nature. Ankyrin repeats are tandemly repeated modules of about 33 amino acids. They occur in a large number of functionally diverse proteins mainly from eukaryotes. The few known examples from prokaryotes and viruses may be the result of horizontal gene transfers []. The repeat has been found in proteins of diverse function such as transcriptional initiators, cell-cycle regulators, cytoskeletal, ion transporters and signal transducers. The ankyrin fold appears to be defined by its structure rather than its function since there is no specific sequence or structure which is universally recognised by it. The conserved fold of the ankyrin repeat unit is known from several crystal and solution structures [, , , ]. Each repeat folds into a helix-loop-helix structure with a beta-hairpin/loop region projecting out from the helices at a 90o angle. The repeats stack together to form an L-shaped structure [, ].; PDB: 3AAA_C 3F6Q_A 2KBX_A 3IXE_A 3TWR_D 3TWV_A 3TWT_B 3TWQ_A 3TWS_A 3TWX_B ....
Probab=23.57 E-value=2.6e+02 Score=21.90 Aligned_cols=13 Identities=38% Similarity=0.649 Sum_probs=4.9
Q ss_pred hCCChHHHHHHHh
Q 003584 282 KCGDLDSARRLLE 294 (809)
Q Consensus 282 ~~g~~~~A~~~f~ 294 (809)
..|+.+-+..+++
T Consensus 35 ~~~~~~~~~~Ll~ 47 (89)
T PF12796_consen 35 ENGNLEIVKLLLE 47 (89)
T ss_dssp HTTTHHHHHHHHH
T ss_pred HcCCHHHHHHHHH
Confidence 3333333333333
No 478
>PF01147 Crust_neurohorm: Crustacean CHH/MIH/GIH neurohormone family; InterPro: IPR001166 Arthropod express a family of neuropeptides [] which so far consist of the following types of neurohormones: Crustacean hyperglycemic hormone (CHH). CHH is primarily involved in blood sugar regulation, but also plays a role in the control of molting and reproduction. Molt-inhibiting hormone (MIH). MIH inhibits Y-organs where molting hormone (ecdysteroid) is secreted. A molting cycle is initiated when MIH secretion diminishes or stops. Gonad-inhibiting hormone (GIH), also known as vitellogenesis-inhibiting hormone (VIH) because of its role in inhibiting vitellogenesis in female animals. Mandibular organ-inhibiting hormone (MOIH). MOIH represses the synthesis of methyl farnesoate, the precursor of insect juvenile hormone III in the mandibular organ. Ion transport peptide (ITP) from locust. ITP stimulates salt and water reabsorption and inhibits acid secretion in the ileum of the locust. Caenorhabditis elegans hypothetical protein ZC168.2. These neurohormones are peptides of 70 to 80 residues which are processed from larger size precursors. They contain six conserved cysteines that are involved in disulphide bonds, as shown in the following schematic representation. ; GO: 0005184 neuropeptide hormone activity, 0005576 extracellular region; PDB: 1J0T_A.
Probab=23.36 E-value=20 Score=27.51 Aligned_cols=14 Identities=43% Similarity=0.797 Sum_probs=10.7
Q ss_pred cccccCcchhHHHH
Q 003584 764 KNLRVCGDCHTAMK 777 (809)
Q Consensus 764 kn~r~c~dch~~~k 777 (809)
|--|||.|||+...
T Consensus 18 kldrVC~DCyNl~R 31 (73)
T PF01147_consen 18 KLDRVCDDCYNLFR 31 (73)
T ss_dssp HHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHc
Confidence 34689999998753
No 479
>cd08326 CARD_CASP9 Caspase activation and recruitment domain of Caspase-9. Caspase activation and recruitment domain (CARD) similar to that found in caspase-9 (CASP9, MCH6, APAF3), which interacts with the CARD of apoptotic protease-activating factor 1 (APAF-1). Caspases are aspartate-specific cysteine proteases with functions in apoptosis and immune signaling. Initiator caspases are the first to be activated following death- or inflammation-inducing signals. Caspase-9 is the initiator caspase associated with the intrinsic or mitochondrial pathway of apoptosis, induced by many pro-apoptotic signals. Together with APAF-1, it forms the heptameric 'apoptosome' in response to the release of cytochrome c from mitochondria. Activated caspase-9 cleaves and activates downstream effector caspases, like caspase-3, caspase-6, and caspase-7, resulting in apoptosis. In general, CARDs are death domains (DDs) associated with caspases. They are known to be important in the signaling pathways for apopt
Probab=23.26 E-value=2.3e+02 Score=22.58 Aligned_cols=61 Identities=20% Similarity=0.231 Sum_probs=37.5
Q ss_pred HHHHHHHHhCCCCchhHHHHHHHHHHhCCChHHHHHHHhccCCCCeeeHHHHHHHHHhcCChhHH
Q 003584 256 QVHGCILSSGFEANVYVQSALIDMYAKCGDLDSARRLLEYSEIDNEVSWNSMIVGFARQGFHKEA 320 (809)
Q Consensus 256 ~~~~~~~~~g~~~~~~~~~~Li~~y~~~g~~~~A~~~f~~~~~~~~~~~~~li~~~~~~g~~~~A 320 (809)
.++..+++.|+- +....-..-+...+.+.|.++++.++.+...+|.....++-..|+..-|
T Consensus 20 ~v~~~L~~~~Vl----t~~~~e~I~~~~tr~~q~~~LLd~L~~RG~~AF~~F~~aL~~~~~~~LA 80 (84)
T cd08326 20 YLWDHLLSRGVF----TPDMIEEIQAAGSRRDQARQLLIDLETRGKQAFPAFLSALRETGQTDLA 80 (84)
T ss_pred HHHHHHHhcCCC----CHHHHHHHHcCCCHHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCchHHH
Confidence 355555555532 2222222333445677788888888888888888888887777665443
No 480
>PRK11639 zinc uptake transcriptional repressor; Provisional
Probab=23.20 E-value=2.3e+02 Score=26.21 Aligned_cols=51 Identities=10% Similarity=-0.070 Sum_probs=30.7
Q ss_pred cccHHHHHHHHhhCCChHHHHHHHHHHHHCCCCCCcchHHHHHHHHhccCC
Q 003584 200 HVAWTTMITGYSQNGYGFKAIECFRDMRVEGVESNQFTFPSILTACAAVSA 250 (809)
Q Consensus 200 ~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~~~~~~~~ 250 (809)
+..-..++..+...++.-.|.++++.+.+.+..++..|..-.|..+...|-
T Consensus 25 T~qR~~IL~~l~~~~~hlSa~eI~~~L~~~~~~is~aTVYRtL~~L~e~Gl 75 (169)
T PRK11639 25 TPQRLEVLRLMSLQPGAISAYDLLDLLREAEPQAKPPTVYRALDFLLEQGF 75 (169)
T ss_pred CHHHHHHHHHHHhcCCCCCHHHHHHHHHhhCCCCCcchHHHHHHHHHHCCC
Confidence 333445555555555666777777777777766666666555555555443
No 481
>PF11768 DUF3312: Protein of unknown function (DUF3312); InterPro: IPR024511 This is a eukaryotic family of uncharacterised proteins that contain WD40 repeats.
Probab=23.17 E-value=5.3e+02 Score=28.69 Aligned_cols=56 Identities=11% Similarity=0.016 Sum_probs=35.3
Q ss_pred HHHHHHHHhcCCHHHHHHHHhhcCCC--CH---hHHHHHHHHHHhcCCHHHHHHHHHHHhh
Q 003584 375 NALIDMYAKQGNLDCAFMVFNLMQDK--DV---ISWTSLITGCAYHGSYEEALKYFSDMRI 430 (809)
Q Consensus 375 ~~li~~y~~~g~~~~A~~~f~~~~~~--~~---~~~~~li~~~~~~g~~~~A~~~~~~m~~ 430 (809)
..|+.-|.+.+++++|..++..|.=. .. .+.+.+.+.+.+..--.+....++.+..
T Consensus 412 ~eL~~~yl~~~qi~eAi~lL~smnW~~~g~~C~~~L~~I~n~Ll~~pl~~ere~~le~alg 472 (545)
T PF11768_consen 412 VELISQYLRCDQIEEAINLLLSMNWNTMGEQCFHCLSAIVNHLLRQPLTPEREAQLEAALG 472 (545)
T ss_pred HHHHHHHHhcCCHHHHHHHHHhCCccccHHHHHHHHHHHHHHHhcCCCChHHHHHHHHHHh
Confidence 35777899999999999999999632 11 2334444555555444444455555543
No 482
>PRK11639 zinc uptake transcriptional repressor; Provisional
Probab=23.05 E-value=2.6e+02 Score=25.80 Aligned_cols=48 Identities=10% Similarity=-0.040 Sum_probs=29.5
Q ss_pred HHHHHHHHhcCChhHHHHHHHHHHHCCCCCCcccHHHHHHHhhcCCCh
Q 003584 305 NSMIVGFARQGFHKEALSLFKKMHARDIKIDDFTYPSVLNCFASNIDL 352 (809)
Q Consensus 305 ~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~ 352 (809)
..++..+...+..-.|.++++++.+.+..++..|....|..+...|-+
T Consensus 29 ~~IL~~l~~~~~hlSa~eI~~~L~~~~~~is~aTVYRtL~~L~e~Glv 76 (169)
T PRK11639 29 LEVLRLMSLQPGAISAYDLLDLLREAEPQAKPPTVYRALDFLLEQGFV 76 (169)
T ss_pred HHHHHHHHhcCCCCCHHHHHHHHHhhCCCCCcchHHHHHHHHHHCCCE
Confidence 344555555555667777777777777666666665555555555443
No 483
>PRK11509 hydrogenase-1 operon protein HyaE; Provisional
Probab=22.73 E-value=2.1e+02 Score=25.18 Aligned_cols=71 Identities=21% Similarity=0.405 Sum_probs=45.8
Q ss_pred EEEECCEEEEEEeCC-CCCcchHHHHHHHHHHHHHHHHcCCccCCccccccccchhhhhhhhhchHHHHHHHHhhCCCCC
Q 003584 679 WVETNSQVHIFISED-RGHPLRTDIYSKIDEIMLLIKEAGYVPDMNFALHNVEEEGKEIGLAYHSEKLAVAFGLLTLPQG 757 (809)
Q Consensus 679 ~~~~~~~~~~~~~~~-~~~~~~~~i~~~l~~l~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~hse~la~~~~~~~~~~~ 757 (809)
|+.-.+..-.|..|| ..+|...++--.|+++.+++.... -.+..-|+++ .+.||..||..+.|
T Consensus 30 ~~~~~~~~vl~~~gdp~r~~E~~D~avvleELa~e~~~~~----v~~akVDiD~----------~~~LA~~fgV~siP-- 93 (132)
T PRK11509 30 WLTQAPDGVVLLSSDPKRTPEVSDNPVMIGELLREFPDYT----WQVAIADLEQ----------SEAIGDRFGVFRFP-- 93 (132)
T ss_pred HHhCCCcEEEEeCCCCCcCCccccHHHHHHHHHHHhcCCc----eEEEEEECCC----------CHHHHHHcCCccCC--
Confidence 333334455788998 478999999888988877763110 1122234443 35599999999888
Q ss_pred CcEEEEccc
Q 003584 758 APIRIFKNL 766 (809)
Q Consensus 758 ~~~~i~kn~ 766 (809)
++.++||=
T Consensus 94 -TLl~FkdG 101 (132)
T PRK11509 94 -ATLVFTGG 101 (132)
T ss_pred -EEEEEECC
Confidence 45666653
No 484
>PF06957 COPI_C: Coatomer (COPI) alpha subunit C-terminus; InterPro: IPR010714 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the C terminus (approximately 500 residues) of the eukaryotic coatomer alpha subunit [, ]. This domain is found along with the IPR006692 from INTERPRO domain. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0005515 protein binding, 0006886 intracellular protein transport, 0016192 vesicle-mediated transport, 0030126 COPI vesicle coat; PDB: 3MKR_B 3MV2_E 3MKQ_B 3MV3_A.
Probab=22.30 E-value=1.9e+02 Score=31.14 Aligned_cols=32 Identities=19% Similarity=0.214 Sum_probs=26.1
Q ss_pred HHHHHHHHHHhcCChhHHHHHHHHHhccCCCC
Q 003584 608 VWKALLSACRVHGDLELGERAANNLFELEPMN 639 (809)
Q Consensus 608 ~~~~ll~a~~~~g~~~~A~~~~~~~~~~~p~~ 639 (809)
++.+-++.+.+++|+..|-..+++++++.|..
T Consensus 302 aLr~AM~~~~K~KNf~tAa~FArRLLel~p~~ 333 (422)
T PF06957_consen 302 ALRSAMSQAFKLKNFITAASFARRLLELNPSP 333 (422)
T ss_dssp HHHHHHHHCCCTTBHHHHHHHHHHHHCT--SC
T ss_pred HHHHHHHHHHHhccHHHHHHHHHHHHHcCCCH
Confidence 66777788889999999999999999998853
No 485
>PF10255 Paf67: RNA polymerase I-associated factor PAF67; InterPro: IPR019382 RNA polymerase I is a multi-subunit enzyme and its transcription competence is dependent on the presence of PAF67 [].
Probab=21.70 E-value=1.6e+02 Score=31.60 Aligned_cols=57 Identities=18% Similarity=0.262 Sum_probs=34.3
Q ss_pred HHHHHHHhcCChhHHHHHHHHH-------h-ccCCCCCccHHhHhhhhhhcCChhHHHHHHHHHH
Q 003584 611 ALLSACRVHGDLELGERAANNL-------F-ELEPMNAMPYVQLSNMYSTAGKWEDAARVRKLMK 667 (809)
Q Consensus 611 ~ll~a~~~~g~~~~A~~~~~~~-------~-~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~ 667 (809)
.|++..+-.||+..|+++++.+ . ..-+-...+|..++-+|...+++.+|.+.|....
T Consensus 127 gLlRvh~LLGDY~~Alk~l~~idl~~~~l~~~V~~~~is~~YyvGFaylMlrRY~DAir~f~~iL 191 (404)
T PF10255_consen 127 GLLRVHCLLGDYYQALKVLENIDLNKKGLYTKVPACHISTYYYVGFAYLMLRRYADAIRTFSQIL 191 (404)
T ss_pred HHHHHHHhccCHHHHHHHhhccCcccchhhccCcchheehHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444455556666666555432 1 1122345667777888888888888888777654
No 486
>COG2912 Uncharacterized conserved protein [Function unknown]
Probab=21.66 E-value=2e+02 Score=28.71 Aligned_cols=60 Identities=20% Similarity=0.220 Sum_probs=49.3
Q ss_pred HHHHHHHHhcCChhHHHHHHHHHhccCCCCCccHHhHhhhhhhcCChhHHHHHHHHHHhC
Q 003584 610 KALLSACRVHGDLELGERAANNLFELEPMNAMPYVQLSNMYSTAGKWEDAARVRKLMKSR 669 (809)
Q Consensus 610 ~~ll~a~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~ 669 (809)
..+=+++...++++.|....++.+.++|+++.-..--+-+|.+.|-..-|..-++...+.
T Consensus 185 ~~lk~~~~~e~~~~~al~~~~r~l~l~P~dp~eirDrGliY~ql~c~~vAl~dl~~~~~~ 244 (269)
T COG2912 185 RNLKAALLRELQWELALRVAERLLDLNPEDPYEIRDRGLIYAQLGCYHVALEDLSYFVEH 244 (269)
T ss_pred HHHHHHHHHhhchHHHHHHHHHHHhhCCCChhhccCcHHHHHhcCCchhhHHHHHHHHHh
Confidence 344567788889999999999999999998877777888899999999888888775544
No 487
>COG0735 Fur Fe2+/Zn2+ uptake regulation proteins [Inorganic ion transport and metabolism]
Probab=21.63 E-value=2.6e+02 Score=24.99 Aligned_cols=46 Identities=15% Similarity=0.089 Sum_probs=25.0
Q ss_pred cHHHHHHHHhhCCChHHHHHHHHHHHHCCCCCCcchHHHHHHHHhc
Q 003584 202 AWTTMITGYSQNGYGFKAIECFRDMRVEGVESNQFTFPSILTACAA 247 (809)
Q Consensus 202 ~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~~~~~ 247 (809)
.-..++..+.+.+..-.|.++|+++.+.+...+..|....|+.+..
T Consensus 22 qR~~vl~~L~~~~~~~sAeei~~~l~~~~p~islaTVYr~L~~l~e 67 (145)
T COG0735 22 QRLAVLELLLEADGHLSAEELYEELREEGPGISLATVYRTLKLLEE 67 (145)
T ss_pred HHHHHHHHHHhcCCCCCHHHHHHHHHHhCCCCCHhHHHHHHHHHHH
Confidence 3445555566565556666666666665555444444444444433
No 488
>PF13929 mRNA_stabil: mRNA stabilisation
Probab=21.58 E-value=8.6e+02 Score=24.70 Aligned_cols=35 Identities=11% Similarity=0.210 Sum_probs=22.2
Q ss_pred hcCCChHHHHHHHHhcCCCCcchHHHHHHHHHccC
Q 003584 47 SNSGEIDEAGQLFEKMSDRDGFTWNTMIAAYANSG 81 (809)
Q Consensus 47 ~~~~~~~~a~~~~~~~~~~~~~~~~~li~~~~~~g 81 (809)
....+++.|..+...-...+......+.+.+.+..
T Consensus 7 L~~~df~~a~~ll~~~~~~~l~~L~~i~~~l~~l~ 41 (292)
T PF13929_consen 7 LSKQDFDEANKLLQSNPENSLDPLKSIVSTLSQLP 41 (292)
T ss_pred HHHhhHHHHHHHHccCCcchhHHHHHHHHHHHhCc
Confidence 34566777777775554445566677777776553
No 489
>COG5071 RPN5 26S proteasome regulatory complex component [Posttranslational modification, protein turnover, chaperones]
Probab=21.56 E-value=5.3e+02 Score=26.10 Aligned_cols=114 Identities=12% Similarity=0.105 Sum_probs=73.9
Q ss_pred HHHHHHhhcCCHHHHHHHHHhCcCCC------CHHH--HHHHHHHHHhcCChhHHHHHHHHHhcc---CCC----CCccH
Q 003584 579 CMIDLLGRSGKLIEAKALLDQMVGEP------DATV--WKALLSACRVHGDLELGERAANNLFEL---EPM----NAMPY 643 (809)
Q Consensus 579 ~li~~~~~~g~~~eA~~~~~~m~~~p------~~~~--~~~ll~a~~~~g~~~~A~~~~~~~~~~---~p~----~~~~~ 643 (809)
-|...+-.+|++++|.+++-..|.+. +..+ .---+..|...+++-.|-...++..+. +|+ ....|
T Consensus 136 ~L~~ikee~Gdi~sA~Dilcn~pVETygs~~~Sekv~fiLEQ~rL~vl~~Dy~~A~~~~kKI~KK~Fe~~d~~slKlkyY 215 (439)
T COG5071 136 LLSQIKEEQGDIKSAQDILCNEPVETYGSFDLSEKVAFILEQVRLFLLRSDYYMASTYTKKINKKFFEKEDVQSLKLKYY 215 (439)
T ss_pred HHHHHHHHhcchhHHHHHHhcCchhhccchhHHHHHHHHHHHHHHHHhccchHHHHHHHHHHHHHHhccccHHHHHHHHH
Confidence 45667778899999998887776421 1111 112246678889999998877777653 232 23467
Q ss_pred HhHhhhhhhcCChhHHHHHHHHHHhCCCccCCceeEEEECCEEEEEEeC
Q 003584 644 VQLSNMYSTAGKWEDAARVRKLMKSRGIRKEPGCSWVETNSQVHIFISE 692 (809)
Q Consensus 644 ~~l~~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~s~~~~~~~~~~~~~~ 692 (809)
..+..+..+...+-+|.++++..-.....+.....|-++...+..|+.-
T Consensus 216 eL~V~i~Lh~R~Yl~v~~y~~~vY~t~~~~~d~Akwk~VLS~~v~F~iL 264 (439)
T COG5071 216 ELKVRIGLHDRAYLDVCKYYRAVYDTAVVQEDPAKWKEVLSNVVCFALL 264 (439)
T ss_pred HHhheeecccHHHHHHHHHHHHHHHHHHhccCcccccchhhcceeeEEe
Confidence 8888888888888899877766644333333335677777766666543
No 490
>PRK14700 recombination factor protein RarA; Provisional
Probab=21.54 E-value=6.3e+02 Score=25.83 Aligned_cols=48 Identities=13% Similarity=0.123 Sum_probs=37.8
Q ss_pred HHHHHHHHHh---cCCHHHHHHHHHHHhhcCCccCHhHHHHHHHHHhcccc
Q 003584 405 WTSLITGCAY---HGSYEEALKYFSDMRISGICPDHVVVSSILSACAELTV 452 (809)
Q Consensus 405 ~~~li~~~~~---~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~~~ 452 (809)
+.-+|+++.+ ..+++.|+-.+.+|.+.|-.|....-..++-|+...|.
T Consensus 126 HYd~iSAf~KSiRGSDpDAAlYyLArml~~GEDp~~IaRRLii~AsEDIGl 176 (300)
T PRK14700 126 FYEQLSAFHKSVRGTDPDAAIFWLSVMLDNGVDPLVIARRMLCIASEDIGN 176 (300)
T ss_pred hHHHHHHHHHHhhcCCccHHHHHHHHHHHcCCCHHHHHHHHHHHHHhhccC
Confidence 3345666654 57899999999999999999988888888888777764
No 491
>PRK13341 recombination factor protein RarA/unknown domain fusion protein; Reviewed
Probab=21.52 E-value=1.4e+03 Score=27.05 Aligned_cols=58 Identities=17% Similarity=0.216 Sum_probs=38.6
Q ss_pred HhcCCHHHHHHHHHHHhhcCCccCHhHHHHHHHHHhcccc-----hhHHHHHHHHHHHhCCCC
Q 003584 413 AYHGSYEEALKYFSDMRISGICPDHVVVSSILSACAELTV-----LEFGQQVHAVFLKSGGCS 470 (809)
Q Consensus 413 ~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~~~-----~~~a~~~~~~~~~~g~~~ 470 (809)
++.++++.|+..+.+|.+.|..|....-..++.+....|. +..+...+......|++.
T Consensus 269 irgsD~daAl~~la~ml~~Gedp~~I~Rrl~~~asEdigladp~al~~~~~~~~a~~~~g~pE 331 (725)
T PRK13341 269 LRGSDPDAALYWLARMVEAGEDPRFIFRRMLIAASEDVGLADPQALVVVEACAAAFERVGLPE 331 (725)
T ss_pred HhcCCHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHhccCCCChHHHHHHHHHHHHHHHhCCcc
Confidence 3468899999999999999988887777666666655553 222333344444555543
No 492
>KOG4077 consensus Cytochrome c oxidase, subunit Va/COX6 [Energy production and conversion]
Probab=21.51 E-value=4e+02 Score=23.15 Aligned_cols=45 Identities=13% Similarity=0.218 Sum_probs=34.1
Q ss_pred HHHHHHHHhhcCCccCHhHHHHHHHHHhcccchhHHHHHHHHHHH
Q 003584 421 ALKYFSDMRISGICPDHVVVSSILSACAELTVLEFGQQVHAVFLK 465 (809)
Q Consensus 421 A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~~~~~~a~~~~~~~~~ 465 (809)
..+-+..+..-.+.|++...-..|.||.+.+++..|.++++-+..
T Consensus 68 vrkglN~l~~yDlVP~pkvIEaaLRA~RRvNDfa~aVRilE~iK~ 112 (149)
T KOG4077|consen 68 VRKGLNNLFDYDLVPSPKVIEAALRACRRVNDFATAVRILEAIKD 112 (149)
T ss_pred HHHHHHhhhccccCCChHHHHHHHHHHHHhccHHHHHHHHHHHHH
Confidence 334445555667788888888899999999998888888876643
No 493
>COG0790 FOG: TPR repeat, SEL1 subfamily [General function prediction only]
Probab=21.34 E-value=8.5e+02 Score=24.54 Aligned_cols=129 Identities=14% Similarity=0.116 Sum_probs=70.0
Q ss_pred CHHHHHHHHHhcCCCC-eeechHHHHHHHh----cCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHcc----C---CH
Q 003584 487 CINDANRVFDSMHTRD-VITWTALIMGCAQ----NGKGKEALQFYDQMLARGTKPDYITFVGLLFACSHA----G---LA 554 (809)
Q Consensus 487 ~~~~A~~~~~~~~~~~-~~~~~~li~~~~~----~g~~~~A~~l~~~m~~~g~~pd~~t~~~ll~a~~~~----g---~~ 554 (809)
+..+|.++|....+.. ......|...|.. ..+..+|...|++..+.|..+-..+...+...+... + +.
T Consensus 92 ~~~~A~~~~~~~a~~g~~~a~~~lg~~~~~G~gv~~d~~~A~~~~~~Aa~~g~~~a~~~~~~l~~~~~~g~~~~~~~~~~ 171 (292)
T COG0790 92 DKTKAADWYRCAAADGLAEALFNLGLMYANGRGVPLDLVKALKYYEKAAKLGNVEAALAMYRLGLAYLSGLQALAVAYDD 171 (292)
T ss_pred cHHHHHHHHHHHhhcccHHHHHhHHHHHhcCCCcccCHHHHHHHHHHHHHcCChhHHHHHHHHHHHHHcChhhhcccHHH
Confidence 3555666665444332 2222333333333 236788888888888887555422233333333332 1 23
Q ss_pred HHHHHHHHHhHHhhCCCCChHHHHHHHHHHh----hcCCHHHHHHHHHhCcCCCCHHHHHHHHHHHHhcC
Q 003584 555 ENARWYFESMDKVYGIKPGPDHYACMIDLLG----RSGKLIEAKALLDQMVGEPDATVWKALLSACRVHG 620 (809)
Q Consensus 555 ~~a~~~~~~m~~~~~~~p~~~~~~~li~~~~----~~g~~~eA~~~~~~m~~~p~~~~~~~ll~a~~~~g 620 (809)
..|...+..+... + +......|..+|. -..+.++|...|.+....-+...+..+. .+...|
T Consensus 172 ~~A~~~~~~aa~~-~---~~~a~~~lg~~y~~G~Gv~~d~~~A~~wy~~Aa~~g~~~a~~~~~-~~~~~g 236 (292)
T COG0790 172 KKALYLYRKAAEL-G---NPDAQLLLGRMYEKGLGVPRDLKKAFRWYKKAAEQGDGAACYNLG-LMYLNG 236 (292)
T ss_pred HhHHHHHHHHHHh-c---CHHHHHHHHHHHHcCCCCCcCHHHHHHHHHHHHHCCCHHHHHHHH-HHHhcC
Confidence 3677777777654 3 3334444444443 3457889999998887655544444444 555555
No 494
>PRK09169 hypothetical protein; Validated
Probab=21.32 E-value=2.1e+03 Score=29.20 Aligned_cols=365 Identities=11% Similarity=0.010 Sum_probs=189.1
Q ss_pred eeHHHHHHHHHhcCChhHHHHHHHHH---HHC--C--CCCCcccHHHHHHHhhcCCChHHHHHHHHHHHH-------hcc
Q 003584 302 VSWNSMIVGFARQGFHKEALSLFKKM---HAR--D--IKIDDFTYPSVLNCFASNIDLNNAKSVHSLIVK-------TGF 367 (809)
Q Consensus 302 ~~~~~li~~~~~~g~~~~A~~~~~~m---~~~--g--~~p~~~t~~~ll~~~~~~~~~~~a~~i~~~~~~-------~g~ 367 (809)
.....++++++|-.+.+.+...-..+ +.. + ...|.--+...++++++-.+-+.+...-..+.. ..-
T Consensus 247 q~va~~LNAlSKWp~~~~c~~aa~~lA~rla~~~~lr~~~~~Q~vAN~LNALSKwp~~~~cr~aa~~LA~rL~~~~~l~~ 326 (2316)
T PRK09169 247 QEVALLLNALSKWPDDEACRQAAEALAARLAREPGLRLALDPQGVANALNALSKWPDTEACRQAAEALAERLAQERGLLQ 326 (2316)
T ss_pred HHHHHHHHHHhcCCCChHHHHHHHHHHHHHhcChhhhhhcCHHHHHHHHHHHHhCCCchHHHHHHHHHHHHHHhChhhhh
Confidence 34455666666655444332222211 111 0 123445566777777777655443322222111 111
Q ss_pred CCchHHHHHHHHHHHhcCCHHHHHHH----HhhcC-------CCCHhHHHHHHHHHHhcCCHHH----HHHHHHHHhhc-
Q 003584 368 EGYKFVNNALIDMYAKQGNLDCAFMV----FNLMQ-------DKDVISWTSLITGCAYHGSYEE----ALKYFSDMRIS- 431 (809)
Q Consensus 368 ~~~~~~~~~li~~y~~~g~~~~A~~~----f~~~~-------~~~~~~~~~li~~~~~~g~~~~----A~~~~~~m~~~- 431 (809)
..+..-....+++++|..+.+.+... -+.+. .-|..-....+.++.+-++-+. |..+...+...
T Consensus 327 ~~~aQ~vAN~LNALSKWp~~~~c~~Aa~~LA~rL~~~~~l~~~~npQelANaLnALSKwp~~~~cr~AA~aLA~rL~~~~ 406 (2316)
T PRK09169 327 AMNAQAVANALNALSKWPDEEACRAAAEALAARLARDAGLRRALNAQELANALNALSKWPDEEACRAAAEALAARLARDA 406 (2316)
T ss_pred hCCHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHHhChhhhhhCCHHHHHHHHHHHHcCCCchHHHHHHHHHHHHHHhch
Confidence 23444445566777777765543322 22221 1244555566777777665432 33333333321
Q ss_pred C--CccCHhHHHHHHHHHhcccchhHHHHHHHHHHH---h----CCCCChhHHhHHHHHHHhcCCHHH----HHHHHHhc
Q 003584 432 G--ICPDHVVVSSILSACAELTVLEFGQQVHAVFLK---S----GGCSSLSVDNSLVLVYAKCGCIND----ANRVFDSM 498 (809)
Q Consensus 432 g--~~p~~~t~~~ll~a~~~~~~~~~a~~~~~~~~~---~----g~~~~~~~~~~li~~y~k~g~~~~----A~~~~~~~ 498 (809)
+ -..|..-....+.+|++.+.-+...+....+.. . .-..+..-....+.+++|.++-+. |..+...+
T Consensus 407 ~l~~~fnaQ~vANaLnALsKWp~~~~c~~aa~aLA~rl~~~a~lr~~fn~QeLaN~LnALsKWp~~~~c~~aa~~LA~rl 486 (2316)
T PRK09169 407 GLRAALNAQGVANALNALSKWPGAEACRQAALALAARLAADARLRNALSAQELANALNALSKWPDEAACRRAAEALAARL 486 (2316)
T ss_pred hhhhhcChHHHHHHHHHHhcCCCchHHHHHHHHHHHHHhhchhhhhhCCHHHHHHHHHHHhcCCchHHHHHHHHHHHHHH
Confidence 1 124666778889999988766644433322211 0 012334445556677888776442 33333333
Q ss_pred C-C------CCeeechHHHHHHHhcCChHHHHH----HHHHHHHC---CCCCCHHHHHHHHHHHHccCCHHHHH----HH
Q 003584 499 H-T------RDVITWTALIMGCAQNGKGKEALQ----FYDQMLAR---GTKPDYITFVGLLFACSHAGLAENAR----WY 560 (809)
Q Consensus 499 ~-~------~~~~~~~~li~~~~~~g~~~~A~~----l~~~m~~~---g~~pd~~t~~~ll~a~~~~g~~~~a~----~~ 560 (809)
. . -+..-....+.++++-++.+.... +..++... --.-|..-+.+.++++++-.+.+... .+
T Consensus 487 ~~~~~l~~af~~Q~lAN~LnALsKwp~~~~c~~aA~aLA~rla~~~~l~~afnpQ~lAN~LnALSKWP~~~~cr~AA~aL 566 (2316)
T PRK09169 487 AGDAELRQALDAQGLANALNALSKWPDSDACRAAAEALADRLAQDPALLQAMDAQGLANTLNALSKWPEEPDCRAAAEAL 566 (2316)
T ss_pred hcChhhhhhcChHHHHHHHHHHhcCCccHHHHHHHHHHHHHHhcChhhhhhcCHHHHHHHHHHHHcCCCchHHHHHHHHH
Confidence 2 1 134455667888888877655432 33322221 01235556778899999887643322 23
Q ss_pred HHHhHHhhC--CCCChHHHHHHHHHHhhcCCHH----HHHHHHHhCcC------CCCHHHHHHHHHHHHhcCChhHHHHH
Q 003584 561 FESMDKVYG--IKPGPDHYACMIDLLGRSGKLI----EAKALLDQMVG------EPDATVWKALLSACRVHGDLELGERA 628 (809)
Q Consensus 561 ~~~m~~~~~--~~p~~~~~~~li~~~~~~g~~~----eA~~~~~~m~~------~p~~~~~~~ll~a~~~~g~~~~A~~~ 628 (809)
...+..+-+ -..+.......+.+++|.+.-. -|..+...... .-|+.-+.++++++.+-.+.+.+..+
T Consensus 567 A~~la~~~~l~~~~naQ~LAN~LnALSKWP~~~acr~Aa~aLA~rla~~~~~~~afn~Q~lAN~LnALSKWP~~~~cr~A 646 (2316)
T PRK09169 567 AARLARRPDLRSALNAQGLANLLNALSKWPDEDACRAAAEALAGRLARDAGLLDAFNAQDLANLLNGLSKWPDEDDCRQA 646 (2316)
T ss_pred HHHHhcChhhhhccCHHHHHHHHHHHhhCCCchhHHHHHHHHHHHHHhccccccccCHHHHHHHHHHHhcCCCchhHHHH
Confidence 333222111 1234566777888899887642 23334444332 24777889999999998887766655
Q ss_pred HHHHhc---cCC-----CCCccHHhHhhhhhhcCChhHHHHHHHHH
Q 003584 629 ANNLFE---LEP-----MNAMPYVQLSNMYSTAGKWEDAARVRKLM 666 (809)
Q Consensus 629 ~~~~~~---~~p-----~~~~~~~~l~~~~~~~g~~~~A~~~~~~m 666 (809)
...+-+ .+| -++....++.|++++-.+.+.+.+....+
T Consensus 647 a~aLA~~L~~~~~l~~af~aQ~LaN~LnALSKWp~~~~c~~Aa~aL 692 (2316)
T PRK09169 647 AEALAARLLRDAGLPRAFDAQGLANALNALSKWPDEAACRAAALAL 692 (2316)
T ss_pred HHHHHHHHhhcchhHHhcCcHHHHHHHHHHHhCCCcHHHHHHHHHH
Confidence 444322 121 23445666777777777665544444433
No 495
>COG0735 Fur Fe2+/Zn2+ uptake regulation proteins [Inorganic ion transport and metabolism]
Probab=21.19 E-value=2.9e+02 Score=24.69 Aligned_cols=44 Identities=14% Similarity=0.074 Sum_probs=23.9
Q ss_pred HHHHHHHHhcCChhHHHHHHHHHHHCCCCCCcccHHHHHHHhhc
Q 003584 305 NSMIVGFARQGFHKEALSLFKKMHARDIKIDDFTYPSVLNCFAS 348 (809)
Q Consensus 305 ~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~ 348 (809)
..++..+.+.+..-.|.++++++.+.++..+..|.-..|..+..
T Consensus 24 ~~vl~~L~~~~~~~sAeei~~~l~~~~p~islaTVYr~L~~l~e 67 (145)
T COG0735 24 LAVLELLLEADGHLSAEELYEELREEGPGISLATVYRTLKLLEE 67 (145)
T ss_pred HHHHHHHHhcCCCCCHHHHHHHHHHhCCCCCHhHHHHHHHHHHH
Confidence 34555555555556666666666666555555554444444333
No 496
>PF12968 DUF3856: Domain of Unknown Function (DUF3856); InterPro: IPR024552 This domain of unknown function is found in a small group of tetratricopeptide-like proteins, which includes the uncharacterised protein Q8KAL8 from SWISSPROT. The structure of Q8KAL8 is known and belongs to the SCOP all alpha class, TPR-like superfamily, CT2138-like family.; PDB: 2HR2_D.
Probab=21.17 E-value=5.4e+02 Score=22.20 Aligned_cols=58 Identities=17% Similarity=0.125 Sum_probs=29.6
Q ss_pred HHHHHHHHhhcCCHHHHHH-------HHHhCcC--CCCHHHHHHHH----HHHHhcCChhHHHHHHHHHhc
Q 003584 577 YACMIDLLGRSGKLIEAKA-------LLDQMVG--EPDATVWKALL----SACRVHGDLELGERAANNLFE 634 (809)
Q Consensus 577 ~~~li~~~~~~g~~~eA~~-------~~~~m~~--~p~~~~~~~ll----~a~~~~g~~~~A~~~~~~~~~ 634 (809)
+..|..++.+.|++++++. +|++=-. +.....|-+.+ .++...|+.++|...|++.-+
T Consensus 58 hA~Ls~A~~~Lgry~e~L~sA~~aL~YFNRRGEL~qdeGklWIaaVfsra~Al~~~Gr~~eA~~~fr~agE 128 (144)
T PF12968_consen 58 HAGLSGALAGLGRYDECLQSADRALRYFNRRGELHQDEGKLWIAAVFSRAVALEGLGRKEEALKEFRMAGE 128 (144)
T ss_dssp HHHHHHHHHHTT-HHHHHHHHHHHHHHHHHH--TTSTHHHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHHH
T ss_pred HHHHHHHHHhhccHHHHHHHHHHHHHHHhhccccccccchhHHHHHHHHHHHHHhcCChHHHHHHHHHHHH
Confidence 4445555555666555443 3333221 22333565443 456677888888888876543
No 497
>COG2178 Predicted RNA-binding protein of the translin family [Translation, ribosomal structure and biogenesis]
Probab=20.91 E-value=7.2e+02 Score=23.54 Aligned_cols=18 Identities=33% Similarity=0.551 Sum_probs=13.7
Q ss_pred hhcCChhHHHHHHHHHHh
Q 003584 651 STAGKWEDAARVRKLMKS 668 (809)
Q Consensus 651 ~~~g~~~~A~~~~~~m~~ 668 (809)
.+.|++++|.+.++-|.+
T Consensus 132 l~~~~~~~Ae~~~~~ME~ 149 (204)
T COG2178 132 LRKGSFEEAERFLKFMEK 149 (204)
T ss_pred HHhccHHHHHHHHHHHHH
Confidence 457888888888888764
No 498
>PHA03100 ankyrin repeat protein; Provisional
Probab=20.90 E-value=1.1e+03 Score=25.80 Aligned_cols=87 Identities=16% Similarity=0.064 Sum_probs=49.4
Q ss_pred HHHHHhcCCChHHHHHHHHhcCCCCcch--HHHHHHH-----HHccCChhHHHHHhhhCCCC---CcchHHHHHHHHH-c
Q 003584 42 ALVDFSNSGEIDEAGQLFEKMSDRDGFT--WNTMIAA-----YANSGRLREAKKLFNETPFK---NFFTWSSLIYGYS-N 110 (809)
Q Consensus 42 ll~~~~~~~~~~~a~~~~~~~~~~~~~~--~~~li~~-----~~~~g~~~~A~~~f~~~~~~---~~~~~~~li~~~~-~ 110 (809)
.+....+.|+.+-.+.+++.+..++... ..+.+.. .+..|..+-+.-+++.-... +...++.|..+.. +
T Consensus 38 ~L~~A~~~~~~~ivk~Ll~~g~~~~~~~~~~~t~L~~~~~~~a~~~~~~~iv~~Ll~~ga~i~~~d~~g~tpL~~A~~~~ 117 (480)
T PHA03100 38 PLYLAKEARNIDVVKILLDNGADINSSTKNNSTPLHYLSNIKYNLTDVKEIVKLLLEYGANVNAPDNNGITPLLYAISKK 117 (480)
T ss_pred hhhhhhccCCHHHHHHHHHcCCCCCCccccCcCHHHHHHHHHHHhhchHHHHHHHHHCCCCCCCCCCCCCchhhHHHhcc
Confidence 3444567788888888899888765322 2234444 56667777777776654332 3334455554443 4
Q ss_pred CCCchhHHHHHHHHHHcCCCCC
Q 003584 111 YGLDIEAFELFWQMQLEGYRPS 132 (809)
Q Consensus 111 ~g~~~~A~~~~~~m~~~g~~p~ 132 (809)
.|+. ++++.+.+.|..++
T Consensus 118 ~~~~----~iv~~Ll~~g~~~~ 135 (480)
T PHA03100 118 SNSY----SIVEYLLDNGANVN 135 (480)
T ss_pred cChH----HHHHHHHHcCCCCC
Confidence 4443 34444555665553
No 499
>PF08311 Mad3_BUB1_I: Mad3/BUB1 homology region 1; InterPro: IPR013212 Proteins containing this domain are checkpoint proteins involved in cell division. This region has been shown to be essential for the binding of BUB1 and MAD3 to CDC20p [].; PDB: 3ESL_B 4AEZ_I 4A1G_B 2LAH_A 2WVI_A 3SI5_B.
Probab=20.32 E-value=5.7e+02 Score=22.15 Aligned_cols=43 Identities=9% Similarity=0.106 Sum_probs=29.8
Q ss_pred HHHHHHHHHHHhCCCC-ChhHHhHHHHHHHhcCCHHHHHHHHHh
Q 003584 455 FGQQVHAVFLKSGGCS-SLSVDNSLVLVYAKCGCINDANRVFDS 497 (809)
Q Consensus 455 ~a~~~~~~~~~~g~~~-~~~~~~~li~~y~k~g~~~~A~~~~~~ 497 (809)
.+..++..|...|+.. ....|......+.+.|++++|.++|+.
T Consensus 81 ~~~~if~~l~~~~IG~~~A~fY~~wA~~le~~~~~~~A~~I~~~ 124 (126)
T PF08311_consen 81 DPREIFKFLYSKGIGTKLALFYEEWAEFLEKRGNFKKADEIYQL 124 (126)
T ss_dssp HHHHHHHHHHHHTTSTTBHHHHHHHHHHHHHTT-HHHHHHHHHH
T ss_pred CHHHHHHHHHHcCccHHHHHHHHHHHHHHHHcCCHHHHHHHHHh
Confidence 6677777777766643 445566777778888888888888764
No 500
>cd08327 CARD_RAIDD Caspase activation and recruitment domain of RIP-associated ICH-1 homologous protein with a death domain. Caspase activation and recruitment domain (CARD) of RAIDD (RIP-associated ICH-1 homologous protein with a death domain), also known as CRADD (Caspase and RIP adaptor). RAIDD is an adaptor protein that together with the p53-inducible protein PIDD and caspase-2, forms the PIDDosome complex, which is required for caspase-2 activation and plays a role in mediating stress-induced apoptosis. RAIDD contains an N-terminal CARD, which interacts with the caspase-2 CARD, and a C-terminal Death domain (DD), which interacts with the DD of PIDD. In general, CARDs are DDs associated with caspases. They are known to be important in the signaling pathways for apoptosis, inflammation and host-defense mechanisms. DDs are protein-protein interaction domains found in a variety of domain architectures. Their common feature is that they form homodimers by self-association or heterodime
Probab=20.29 E-value=3.7e+02 Score=21.96 Aligned_cols=50 Identities=10% Similarity=0.098 Sum_probs=38.5
Q ss_pred HhcCCCCcchHHHHHHHHHccCChhHHHHHhhhCCCCCcchHHHHHHHHH
Q 003584 60 EKMSDRDGFTWNTMIAAYANSGRLREAKKLFNETPFKNFFTWSSLIYGYS 109 (809)
Q Consensus 60 ~~~~~~~~~~~~~li~~~~~~g~~~~A~~~f~~~~~~~~~~~~~li~~~~ 109 (809)
+.+.+.++.|.+..-..-+..-+.+.|.++++-+|.++..+|.....++-
T Consensus 28 ~~L~~~gIlT~~~~e~I~a~~T~~~k~~~LLdiLp~RG~~AF~~F~~aL~ 77 (94)
T cd08327 28 QYLYQEGILTESHVEEIESQTTSRRKTMKLLDILPSRGPKAFHAFLDSLE 77 (94)
T ss_pred HHHHhCCCCCHHHHHHHHccCChHHHHHHHHHHHHhhChhHHHHHHHHHH
Confidence 33445566676666666667778899999999999999998888888874
Done!