Query 003584
Match_columns 809
No_of_seqs 797 out of 5031
Neff 10.5
Searched_HMMs 29240
Date Tue Mar 26 18:01:34 2013
Command hhsearch -i /local_scratch/syshi/lefta3m/003584.a3m -d /local_scratch/syshi/pdb70.hhm -v 0 -o /local_scratch/syshi/H1_1633-1637//hhsearch_pdb/003584hhsearch_pdb
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 2xpi_A Anaphase-promoting comp 1.0 1 1 334.7 37.7 482 76-669 62-579 (597)
2 2xpi_A Anaphase-promoting comp 1.0 1 1 331.4 39.6 498 47-652 64-596 (597)
3 4g26_A Pentatricopeptide repea 1.0 1 1 210.9 17.7 133 317-449 86-222 (501)
4 4g26_A Pentatricopeptide repea 1.0 1 1 210.5 23.3 181 203-383 29-222 (501)
5 1w3b_A UDP-N-acetylglucosamine 1.0 1 1 204.0 38.4 370 207-655 6-388 (388)
6 1w3b_A UDP-N-acetylglucosamine 1.0 1 1 197.7 38.3 351 309-669 7-368 (388)
7 2gw1_A Mitochondrial precursor 1.0 1 1 190.5 32.1 223 443-670 243-479 (514)
8 2gw1_A Mitochondrial precursor 1.0 1 1 185.4 29.3 241 403-647 238-490 (514)
9 2y4t_A DNAJ homolog subfamily 1.0 1 1 180.4 32.9 171 473-648 178-371 (450)
10 3fp2_A TPR repeat-containing p 1.0 1 1 179.4 31.1 228 405-669 246-491 (537)
No 1
>2xpi_A Anaphase-promoting complex subunit CUT9; cell cycle, TPR, ubiquitin ligase; 2.60A {Schizosaccharomyces pombe}
Probab=1.00 E-value=1 Score=334.69 Aligned_cols=482 Identities=10% Similarity=-0.044 Sum_probs=230.1
Q ss_pred HHHCCCCHHHHHHHHHHCCCCCCCHHHHHHHHHHCCCCCHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHCCCCCHHHHHH
Q ss_conf 98715993489999601999991108999999980899046999999979869998914189899886237980599999
Q 003584 76 AYANSGRLREAKKLFNETPFKNFFTWSSLIYGYSNYGLDIEAFELFWQMQLEGYRPSQYTLDNVLRLCSLKGLLQRGEQF 155 (809)
Q Consensus 76 ~~~~~g~~~~A~~~f~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~ 155 (809)
.+.+.|.+..++..|+.++.+++..|+.++..+.+.|++++|..+|++|.. ..|+..++..+...+...|+++.|..+
T Consensus 62 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~~~~--~~p~~~~~~~l~~~~~~~g~~~~A~~~ 139 (597)
T 2xpi_A 62 NTSTDGSFLKERNAQNTDSLSREDYLRLWRHDALMQQQYKCAAFVGEKVLD--ITGNPNDAFWLAQVYCCTGDYARAKCL 139 (597)
T ss_dssp --------------------CHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH--HHCCHHHHHHHHHHHHHTTCHHHHHHH
T ss_pred CCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHH--HCCCCHHHHHHHHHHHHCCCHHHHHHH
T ss_conf 665567667887754663378999999999999874583479999999996--089935799999999974769999999
Q ss_pred HHHHHHHCCCCCHHHHHHHHHHHHCCCCHHHHHHHHHHCCCCC------------------CCCCHHHHHHHHHHCCCHH
Q ss_conf 9999993889766889999994360799247999762189999------------------9334889998873079948
Q 003584 156 HGYAIKTCFDLNAFVVTGLVDMYAKCKCIFEAEYLFKMFPDGK------------------NHVAWTTMITGYSQNGYGF 217 (809)
Q Consensus 156 ~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~f~~~~~~~------------------~~~~~~~li~~~~~~g~~~ 217 (809)
++.+... +++..+++.++.+|.++|++++|.++|+++.... +..+|+.++.+|.+.|+++
T Consensus 140 ~~~~~~~--~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~ 217 (597)
T 2xpi_A 140 LTKEDLY--NRSSACRYLAAFCLVKLYDWQGALNLLGETNPFRKDEKNANKLLMQDGGIKLEASMCYLRGQVYTNLSNFD 217 (597)
T ss_dssp HHHTCGG--GTCHHHHHHHHHHHHHTTCHHHHHHHHCSSCTTC----------CCCSSCCHHHHHHHHHHHHHHHTTCHH
T ss_pred HHHHHCC--CCCHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHCCCHH
T ss_conf 9987335--45650899999999988669999999842488632232343343211235125899999889999839989
Q ss_pred HHHHHHHHHHHCCCCCCCCH-HHHHHHHHHCCCCHH--HHHHH-HHHHHHHCCCCCHHHHHHHHHHHHHCCCHHHHHHHH
Q ss_conf 99999999777799999400-999999973239907--99999-999998199984448999999888079947999998
Q 003584 218 KAIECFRDMRVEGVESNQFT-FPSILTACAAVSARD--FGAQV-HGCILSSGFEANVYVQSALIDMYAKCGDLDSARRLL 293 (809)
Q Consensus 218 ~A~~~~~~m~~~g~~p~~~t-~~~ll~~~~~~~~~~--~a~~i-~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~ 293 (809)
+|+++|++|.+.+ |+... +..+...+...+... .+..+ +..+...+......+++.++..|.+.|++++|..+|
T Consensus 218 ~A~~~~~~~~~~~--p~~~~~~~~l~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~ 295 (597)
T 2xpi_A 218 RAKECYKEALMVD--AKCYEAFDQLVSNHLLTADEEWDLVLKLNYSTYSKEDAAFLRSLYMLKLNKTSHEDELRRAEDYL 295 (597)
T ss_dssp HHHHHHHHHHHHC--TTCHHHHHHHHHTTCSCHHHHHHHHHHSCTHHHHGGGHHHHHHHHHTTSCTTTTHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHC--CHHHHHHHHHHHHHCCCCHHHHHHHHHCCCCCCCCCHHHHHHHHHHHHHHHHCCCCHHHHHHHHH
T ss_conf 9999999999729--32569999999850346156789998657742344308899999999999980731399999999
Q ss_pred HCCCCCCEEEHHHHHHHHHHCCCHHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHCCCCHHHHHHHHHHHHHHCCCCCHHH
Q ss_conf 50699992219999999992599168999999979889999964178899986147993779999999998435783479
Q 003584 294 EYSEIDNEVSWNSMIVGFARQGFHKEALSLFKKMHARDIKIDDFTYPSVLNCFASNIDLNNAKSVHSLIVKTGFEGYKFV 373 (809)
Q Consensus 294 ~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~ 373 (809)
T Consensus 296 -------------------------------------------------------------------------------- 295 (597)
T 2xpi_A 296 -------------------------------------------------------------------------------- 295 (597)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred --------------------------------------------------------------------------------
T ss_conf --------------------------------------------------------------------------------
Q ss_pred HHHHHHHHHHCCCHHHHHHHHHHCCC--CCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHCCC
Q ss_conf 99999999942998899999952599--9876999999988715999999999999843297668858999999973006
Q 003584 374 NNALIDMYAKQGNLDCAFMVFNLMQD--KDVISWTSLITGCAYHGSYEEALKYFSDMRISGICPDHVVVSSILSACAELT 451 (809)
Q Consensus 374 ~~~li~~~~~~g~~~~A~~~~~~~~~--~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~~ 451 (809)
+.+.+ ++..+|+.++..|.+.|++++|+.+|+++.+.+ +.+..++..++..+...|
T Consensus 296 ---------------------~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~g 353 (597)
T 2xpi_A 296 ---------------------SSINGLEKSSDLLLCKADTLFVRSRFIDVLAITTKILEID-PYNLDVYPLHLASLHESG 353 (597)
T ss_dssp ---------------------HTSTTGGGCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCCTTHHHHHHHHHHHT
T ss_pred ---------------------HHHHCCCCHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHCC-CCCHHHHHHHHHHHHHHC
T ss_conf ---------------------8764388309999999999998468999999999999729-553799999999999827
Q ss_pred CHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHCC---CCCEEECHHHHHHHHHCCCHHHHHHHHHH
Q ss_conf 504899999999991999880487499887994099999999997249---99900023999999964994999999999
Q 003584 452 VLEFGQQVHAVFLKSGGCSSLSVDNSLVLVYAKCGCINDANRVFDSMH---TRDVITWTALIMGCAQNGKGKEALQFYDQ 528 (809)
Q Consensus 452 ~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~---~~~~~~~~~li~~~~~~g~~~~A~~~~~~ 528 (809)
+.+.+..++..+.+.. +.+..+++.++.+|.+.|++++|.++|+++. ..+..+|+.++.+|.+.|++++|+.+|++
T Consensus 354 ~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~ 432 (597)
T 2xpi_A 354 EKNKLYLISNDLVDRH-PEKAVTWLAVGIYYLCVNKISEARRYFSKSSTMDPQFGPAWIGFAHSFAIEGEHDQAISAYTT 432 (597)
T ss_dssp CHHHHHHHHHHHHHHC-TTSHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHCCCHHHHHHHHHH
T ss_conf 7779999999998518-354799999999999835699999999999872977789999999999975777999999999
Q ss_pred HHHCCCCCCHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHCCC------
Q ss_conf 99889998887899999999803979999999999678509998869999999998421998999999986769------
Q 003584 529 MLARGTKPDYITFVGLLFACSHAGLAENARWYFESMDKVYGIKPGPDHYACMIDLLGRSGKLIEAKALLDQMVG------ 602 (809)
Q Consensus 529 m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~~~~~~~l~~~~~~~g~~~eA~~~~~~~~~------ 602 (809)
+...+ +.+..++..++.+|.+.|++++|..+|+.+.+. .+.+...|..++.+|.+.|++++|.++++++..
T Consensus 433 ~~~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~--~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~ 509 (597)
T 2xpi_A 433 AARLF-QGTHLPYLFLGMQHMQLGNILLANEYLQSSYAL--FQYDPLLLNELGVVAFNKSDMQTAINHFQNALLLVKKTQ 509 (597)
T ss_dssp HHHTT-TTCSHHHHHHHHHHHHHTCHHHHHHHHHHHHHH--CCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSC
T ss_pred HHHHC-CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHH--CCCCHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHCCC
T ss_conf 99868-134389999999999857999999999999984--888767999999999981899999999999998532345
Q ss_pred -CCC--HHHHHHHHHHHHHCCCHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHCCCHHHHHHHHHHHHHC
Q ss_conf -999--8789999999996199549999998875369999710786961532159926999999999858
Q 003584 603 -EPD--ATVWKALLSACRVHGDLELGERAANNLFELEPMNAMPYVQLSNMYSTAGKWEDAARVRKLMKSR 669 (809)
Q Consensus 603 -~p~--~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~ 669 (809)
.|+ ..+|..++.+|...|++++|...++++++++|+++.+|..++.+|...|++++|.+.++++.+.
T Consensus 510 ~~p~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~l~~ 579 (597)
T 2xpi_A 510 SNEKPWAATWANLGHAYRKLKMYDAAIDALNQGLLLSTNDANVHTAIALVYLHKKIPGLAITHLHESLAI 579 (597)
T ss_dssp CCSGGGHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHCCHHHHHHHHHHHHHC
T ss_conf 4535499999999999998047999999999999738997389999999999817899999999999720
No 2
>2xpi_A Anaphase-promoting complex subunit CUT9; cell cycle, TPR, ubiquitin ligase; 2.60A {Schizosaccharomyces pombe}
Probab=1.00 E-value=1 Score=331.41 Aligned_cols=498 Identities=12% Similarity=-0.054 Sum_probs=330.5
Q ss_pred HCCCCHHHHHHHHHHCCCCCCCHHHHHHHHHHCCCCHHHHHHHHHHCC--CCCCCHHHHHHHHHHCCCCCHHHHHHHHHH
Q ss_conf 527993999999984189982359999999871599348999960199--999110899999998089904699999997
Q 003584 47 SNSGEIDEAGQLFEKMSDRDGFTWNTMIAAYANSGRLREAKKLFNETP--FKNFFTWSSLIYGYSNYGLDIEAFELFWQM 124 (809)
Q Consensus 47 ~~~~~~~~a~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~f~~~~--~~~~~~~~~li~~~~~~g~~~~a~~~~~~m 124 (809)
...+.+..+...+..+..++...++.++..|.+.|++++|..+|+++. .|+..+|+.++.+|.+.|++++|..+|+.+
T Consensus 64 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~ 143 (597)
T 2xpi_A 64 STDGSFLKERNAQNTDSLSREDYLRLWRHDALMQQQYKCAAFVGEKVLDITGNPNDAFWLAQVYCCTGDYARAKCLLTKE 143 (597)
T ss_dssp ------------------CHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHTTCHHHHHHHHHHT
T ss_pred CCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHCCCCHHHHHHHHHHHHCCCHHHHHHHHHHH
T ss_conf 55676678877546633789999999999998745834799999999960899357999999999747699999999987
Q ss_pred HHCCCCCCCCCHHHHHHHHHCCCCCHHHHHHHHHHHHH---------------CCCCCHHHHHHHHHHHHCCCCHHHHHH
Q ss_conf 98699989141898998862379805999999999993---------------889766889999994360799247999
Q 003584 125 QLEGYRPSQYTLDNVLRLCSLKGLLQRGEQFHGYAIKT---------------CFDLNAFVVTGLVDMYAKCKCIFEAEY 189 (809)
Q Consensus 125 ~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~---------------g~~~~~~~~~~li~~~~~~g~~~~A~~ 189 (809)
.. .+++..++..+...+...|++++|..+++.+... +.+.+..+++.++..|.+.|++++|..
T Consensus 144 ~~--~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~ 221 (597)
T 2xpi_A 144 DL--YNRSSACRYLAAFCLVKLYDWQGALNLLGETNPFRKDEKNANKLLMQDGGIKLEASMCYLRGQVYTNLSNFDRAKE 221 (597)
T ss_dssp CG--GGTCHHHHHHHHHHHHHTTCHHHHHHHHCSSCTTC----------CCCSSCCHHHHHHHHHHHHHHHTTCHHHHHH
T ss_pred HC--CCCCHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHCCCHHHHHH
T ss_conf 33--5456508999999999886699999998424886322323433432112351258999998899998399899999
Q ss_pred HHHHCCCC--CCCCCHHHHHHHHHHCCCHHHHHHH---HHHHHHCCCCCCCCHHHHHHHHHHCCCCHHHHHHHHHHHHHH
Q ss_conf 76218999--9933488999887307994899999---999777799999400999999973239907999999999981
Q 003584 190 LFKMFPDG--KNHVAWTTMITGYSQNGYGFKAIEC---FRDMRVEGVESNQFTFPSILTACAAVSARDFGAQVHGCILSS 264 (809)
Q Consensus 190 ~f~~~~~~--~~~~~~~~li~~~~~~g~~~~A~~~---~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~i~~~~~~~ 264 (809)
.|+++... .+...|..+...+...+....+... +..+...+..+...+|..++..+...|++++|.++++.+.+.
T Consensus 222 ~~~~~~~~~p~~~~~~~~l~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~~~~~ 301 (597)
T 2xpi_A 222 CYKEALMVDAKCYEAFDQLVSNHLLTADEEWDLVLKLNYSTYSKEDAAFLRSLYMLKLNKTSHEDELRRAEDYLSSINGL 301 (597)
T ss_dssp HHHHHHHHCTTCHHHHHHHHHTTCSCHHHHHHHHHHSCTHHHHGGGHHHHHHHHHTTSCTTTTHHHHHHHHHHHHTSTTG
T ss_pred HHHHHHHHCCHHHHHHHHHHHHHCCCCHHHHHHHHHCCCCCCCCCHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHCC
T ss_conf 99999972932569999999850346156789998657742344308899999999999980731399999999876438
Q ss_pred CCCCCHHHHHHHHHHHHHCCCHHHHHHHHHCCC---CCCEEEHHHHHHHHHHCCCHHHHHHHHHHHHHCCCCCCCCCHHH
Q ss_conf 999844489999998880799479999985069---99922199999999925991689999999798899999641788
Q 003584 265 GFEANVYVQSALIDMYAKCGDLDSARRLLEYSE---IDNEVSWNSMIVGFARQGFHKEALSLFKKMHARDIKIDDFTYPS 341 (809)
Q Consensus 265 g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~---~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~t~~~ 341 (809)
+++..+++.++..|.+.|++++|..+|+++. ..+..+|+.++..+.+.|+.++|..+++++...
T Consensus 302 --~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~----------- 368 (597)
T 2xpi_A 302 --EKSSDLLLCKADTLFVRSRFIDVLAITTKILEIDPYNLDVYPLHLASLHESGEKNKLYLISNDLVDR----------- 368 (597)
T ss_dssp --GGCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCCTTHHHHHHHHHHHTCHHHHHHHHHHHHHH-----------
T ss_pred --CCHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHCCHHHHHHHHHHHHHH-----------
T ss_conf --8309999999999998468999999999999729553799999999999827777999999999851-----------
Q ss_pred HHHHHHCCCCHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHCCC---CCHHHHHHHHHHHHHCCCH
Q ss_conf 9998614799377999999999843578347999999999942998899999952599---9876999999988715999
Q 003584 342 VLNCFASNIDLNNAKSVHSLIVKTGFEGYKFVNNALIDMYAKQGNLDCAFMVFNLMQD---KDVISWTSLITGCAYHGSY 418 (809)
Q Consensus 342 ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~g~~ 418 (809)
. +.+..+++.++.+|.++|++++|..+|+++.+ .+..+|+.++.+|.+.|++
T Consensus 369 ------------------------~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~ 423 (597)
T 2xpi_A 369 ------------------------H-PEKAVTWLAVGIYYLCVNKISEARRYFSKSSTMDPQFGPAWIGFAHSFAIEGEH 423 (597)
T ss_dssp ------------------------C-TTSHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCH
T ss_pred ------------------------C-CCCHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHCCCH
T ss_conf ------------------------8-354799999999999835699999999999872977789999999999975777
Q ss_pred HHHHHHHHHHHHCCCCCCHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHC
Q ss_conf 99999999984329766885899999997300650489999999999199988048749988799409999999999724
Q 003584 419 EEALKYFSDMRISGICPDHVVVSSILSACAELTVLEFGQQVHAVFLKSGGCSSLSVDNSLVLVYAKCGCINDANRVFDSM 498 (809)
Q Consensus 419 ~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~ 498 (809)
++|+++|++|...+
T Consensus 424 ~~A~~~~~~~~~~~------------------------------------------------------------------ 437 (597)
T 2xpi_A 424 DQAISAYTTAARLF------------------------------------------------------------------ 437 (597)
T ss_dssp HHHHHHHHHHHHTT------------------------------------------------------------------
T ss_pred HHHHHHHHHHHHHC------------------------------------------------------------------
T ss_conf 99999999999868------------------------------------------------------------------
Q ss_pred CCCCEEECHHHHHHHHHCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHH---CCCCC--
Q ss_conf 9999000239999999649949999999999988999888789999999980397999999999967850---99988--
Q 003584 499 HTRDVITWTALIMGCAQNGKGKEALQFYDQMLARGTKPDYITFVGLLFACSHAGLAENARWYFESMDKVY---GIKPG-- 573 (809)
Q Consensus 499 ~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~---~~~p~-- 573 (809)
..+..+|+.++.+|...|++++|..+|+++.... +.+..++..++..+...|++++|..+|+.+.+.. +..|+
T Consensus 438 -~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~p~~~ 515 (597)
T 2xpi_A 438 -QGTHLPYLFLGMQHMQLGNILLANEYLQSSYALF-QYDPLLLNELGVVAFNKSDMQTAINHFQNALLLVKKTQSNEKPW 515 (597)
T ss_dssp -TTCSHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCCSGGG
T ss_pred -CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHCCCCCHHHH
T ss_conf -1343899999999998579999999999999848-88767999999999981899999999999998532345453549
Q ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHCCC--CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHCCCCCCCCCHHHHHHHHH
Q ss_conf 69999999998421998999999986769--9998789999999996199549999998875369999710786961532
Q 003584 574 PDHYACMIDLLGRSGKLIEAKALLDQMVG--EPDATVWKALLSACRVHGDLELGERAANNLFELEPMNAMPYVQLSNMYS 651 (809)
Q Consensus 574 ~~~~~~l~~~~~~~g~~~eA~~~~~~~~~--~p~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~ 651 (809)
...|..++.+|.+.|++++|.+.++++.. +.+..+|..++.+|...|++++|...++++++++|+++..+..++++|.
T Consensus 516 ~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~l~~~~~ 595 (597)
T 2xpi_A 516 AATWANLGHAYRKLKMYDAAIDALNQGLLLSTNDANVHTAIALVYLHKKIPGLAITHLHESLAISPNEIMASDLLKRALE 595 (597)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHTTC
T ss_pred HHHHHHHHHHHHHHCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHCCHHHHHHHHHHHHHCCCCCHHHHHHHHHHHH
T ss_conf 99999999999980479999999999997389973899999999998178999999999997208887489999999874
Q ss_pred H
Q ss_conf 1
Q 003584 652 T 652 (809)
Q Consensus 652 ~ 652 (809)
.
T Consensus 596 ~ 596 (597)
T 2xpi_A 596 E 596 (597)
T ss_dssp -
T ss_pred C
T ss_conf 3
No 3
>4g26_A Pentatricopeptide repeat-containing protein AT2G3 mitochondrial; metallonuclease, prorp, ribonuclease, PIN, tRNA processing, NYN domain; 1.75A {Arabidopsis thaliana} PDB: 4g23_A* 4g25_A 4g24_A
Probab=1.00 E-value=1 Score=210.87 Aligned_cols=133 Identities=12% Similarity=0.069 Sum_probs=65.2
Q ss_pred HHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHCCCCHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHH
Q ss_conf 16899999997988999996417889998614799377999999999843578347999999999942998899999952
Q 003584 317 HKEALSLFKKMHARDIKIDDFTYPSVLNCFASNIDLNNAKSVHSLIVKTGFEGYKFVNNALIDMYAKQGNLDCAFMVFNL 396 (809)
Q Consensus 317 ~~~A~~~~~~m~~~~~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~ 396 (809)
.+.|.++|++|...|+.||..||+.++.+|++.|+++.|.++++.|.+.|+.||..+|+.+|.+|++.|++++|.++|++
T Consensus 86 l~~A~~lf~~M~~~G~~Pd~~tyn~lI~~~~~~g~~~~A~~l~~~M~~~g~~Pd~~tyn~lI~~~~~~g~~~~A~~l~~~ 165 (501)
T 4g26_A 86 LSRGFDIFKQMIVDKVVPNEATFTNGARLAVAKDDPEMAFDMVKQMKAFGIQPRLRSYGPALFGFCRKGDADKAYEVDAH 165 (501)
T ss_dssp HHHHHHHHHHHHHTTCCCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHTTCCCCHHHHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHCCCCCCCCEEHHHHHHHHHCCCHHHHHHHHHH
T ss_conf 99999999999980899989999999999984697788999999999728988611104899999988899999999999
Q ss_pred CCC----CCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHC
Q ss_conf 599----98769999999887159999999999998432976688589999999730
Q 003584 397 MQD----KDVISWTSLITGCAYHGSYEEALKYFSDMRISGICPDHVVVSSILSACAE 449 (809)
Q Consensus 397 ~~~----~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~ 449 (809)
|.+ ||..+|+++|.+|++.|+.++|.++|++|++.|..|+..||..++..++.
T Consensus 166 M~~~G~~Pd~~ty~~Li~~~~~~g~~d~A~~ll~~Mr~~g~~ps~~T~~~l~~~F~s 222 (501)
T 4g26_A 166 MVESEVVPEEPELAALLKVSMDTKNADKVYKTLQRLRDLVRQVSKSTFDMIEEWFKS 222 (501)
T ss_dssp HHHTTCCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTSSBCHHHHHHHHHHHHS
T ss_pred HHHCCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHC
T ss_conf 986299999999999999985389899999999999994899699999999999830
No 4
>4g26_A Pentatricopeptide repeat-containing protein AT2G3 mitochondrial; metallonuclease, prorp, ribonuclease, PIN, tRNA processing, NYN domain; 1.75A {Arabidopsis thaliana} PDB: 4g23_A* 4g25_A 4g24_A
Probab=1.00 E-value=1 Score=210.46 Aligned_cols=181 Identities=13% Similarity=0.161 Sum_probs=88.9
Q ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHCCCC---------HHHHHHHHHHHHHHCCCCCHHHH
Q ss_conf 889998873079948999999997777999994009999999732399---------07999999999981999844489
Q 003584 203 WTTMITGYSQNGYGFKAIECFRDMRVEGVESNQFTFPSILTACAAVSA---------RDFGAQVHGCILSSGFEANVYVQ 273 (809)
Q Consensus 203 ~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~---------~~~a~~i~~~~~~~g~~~~~~~~ 273 (809)
++.+|.+|++.|+.++|+++|++|.+.|+.||..||+++|.+|+..+. ++.|.++++.|.+.|+.||..+|
T Consensus 29 l~~~id~c~k~G~~~~A~~lf~~M~~~Gv~pd~~tyn~Li~~c~~~~~~~~~~~~~~l~~A~~lf~~M~~~G~~Pd~~ty 108 (501)
T 4g26_A 29 LKQKLDMCSKKGDVLEALRLYDEARRNGVQLSQYHYNVLLYVCSLAEAATESSPNPGLSRGFDIFKQMIVDKVVPNEATF 108 (501)
T ss_dssp HHHHHHHTTTSCCHHHHHHHHHHHHHHTCCCCHHHHHHHHHHHTTCCCCSSSSCCHHHHHHHHHHHHHHHTTCCCCHHHH
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHCCCHHHHHHCCHHHHHHHHHHHHHHHCCCCCHHHH
T ss_conf 99999999859899999999999998189987839999999998578304333212499999999999980899989999
Q ss_pred HHHHHHHHHCCCHHHHHHHHHCCC----CCCEEEHHHHHHHHHHCCCHHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHCC
Q ss_conf 999998880799479999985069----9992219999999992599168999999979889999964178899986147
Q 003584 274 SALIDMYAKCGDLDSARRLLEYSE----IDNEVSWNSMIVGFARQGFHKEALSLFKKMHARDIKIDDFTYPSVLNCFASN 349 (809)
Q Consensus 274 ~~li~~~~~~g~~~~A~~~~~~~~----~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~t~~~ll~~~~~~ 349 (809)
+.||.+|++.|++++|..+|++|. .||..+|+.+|.+|++.|+.++|.++|++|.+.|+.||..||+.++.+|++.
T Consensus 109 n~lI~~~~~~g~~~~A~~l~~~M~~~g~~Pd~~tyn~lI~~~~~~g~~~~A~~l~~~M~~~G~~Pd~~ty~~Li~~~~~~ 188 (501)
T 4g26_A 109 TNGARLAVAKDDPEMAFDMVKQMKAFGIQPRLRSYGPALFGFCRKGDADKAYEVDAHMVESEVVPEEPELAALLKVSMDT 188 (501)
T ss_dssp HHHHHHHHHHTCHHHHHHHHHHHHHTTCCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCCCCHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHCCCHHHHHHHHHHHHHCCCCCCCCEEHHHHHHHHHCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHC
T ss_conf 99999998469778899999999972898861110489999998889999999999998629999999999999998538
Q ss_pred CCHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHH
Q ss_conf 9937799999999984357834799999999994
Q 003584 350 IDLNNAKSVHSLIVKTGFEGYKFVNNALIDMYAK 383 (809)
Q Consensus 350 ~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~ 383 (809)
|+.+.|.++++.|.+.|..|+..+++.++..+..
T Consensus 189 g~~d~A~~ll~~Mr~~g~~ps~~T~~~l~~~F~s 222 (501)
T 4g26_A 189 KNADKVYKTLQRLRDLVRQVSKSTFDMIEEWFKS 222 (501)
T ss_dssp TCHHHHHHHHHHHHHHTSSBCHHHHHHHHHHHHS
T ss_pred CCHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHC
T ss_conf 9899999999999994899699999999999830
No 5
>1w3b_A UDP-N-acetylglucosamine--peptide N-acetylglucosaminyltransferase 110; OGT, glcnac, nucleoporin, O-linked glycosylation, TPR repeat, protein binding; 2.85A {Homo sapiens} SCOP: a.118.8.1
Probab=1.00 E-value=1 Score=203.96 Aligned_cols=370 Identities=14% Similarity=0.101 Sum_probs=220.1
Q ss_pred HHHHHHCCCHHHHHHHHHHHHHCCCCCCC-CHHHHHHHHHHCCCCHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHCCC
Q ss_conf 98873079948999999997777999994-00999999973239907999999999981999844489999998880799
Q 003584 207 ITGYSQNGYGFKAIECFRDMRVEGVESNQ-FTFPSILTACAAVSARDFGAQVHGCILSSGFEANVYVQSALIDMYAKCGD 285 (809)
Q Consensus 207 i~~~~~~g~~~~A~~~~~~m~~~g~~p~~-~t~~~ll~~~~~~~~~~~a~~i~~~~~~~g~~~~~~~~~~li~~~~~~g~ 285 (809)
...+.+.|++++|.+.+..+.+. .|+. ..+..+...+...++.+.+...+...++.. +.+...+..+...|.+.|+
T Consensus 6 a~~~~~~g~~~~A~~~~~~~~~~--~p~~~~~~~~l~~~~~~~~~~~~a~~~~~~a~~~~-p~~~~~~~~lg~~~~~~g~ 82 (388)
T 1w3b_A 6 AHREYQAGDFEAAERHCMQLWRQ--EPDNTGVLLLLSSIHFQCRRLDRSAHFSTLAIKQN-PLLAEAYSNLGNVYKERGQ 82 (388)
T ss_dssp HHHHHHHTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTC
T ss_pred HHHHHHCCCHHHHHHHHHHHHHH--CCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHCC-CCCHHHHHHHHHHHHHCCC
T ss_conf 99998779999999999999984--97889999999999998689999999999997619-7866999999999987799
Q ss_pred HHHHHHHHHCCC---CCCEEEHHHHHHHHHHCCCHHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHCCCCHHHHHHHHHHH
Q ss_conf 479999985069---99922199999999925991689999999798899999641788999861479937799999999
Q 003584 286 LDSARRLLEYSE---IDNEVSWNSMIVGFARQGFHKEALSLFKKMHARDIKIDDFTYPSVLNCFASNIDLNNAKSVHSLI 362 (809)
Q Consensus 286 ~~~A~~~~~~~~---~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~ 362 (809)
+++|...|+.+. ..+...|..+...+...|++++|...|+++.+
T Consensus 83 ~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~--------------------------------- 129 (388)
T 1w3b_A 83 LQEAIEHYRHALRLKPDFIDGYINLAAALVAAGDMEGAVQAYVSALQ--------------------------------- 129 (388)
T ss_dssp HHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHSCSSHHHHHHHHHHH---------------------------------
T ss_pred HHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHCCCHHHHHHHHHHHHH---------------------------------
T ss_conf 99999999999874965399999999999985899999999999997---------------------------------
Q ss_pred HHHCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHCCC---CCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHCCCCCCHHH
Q ss_conf 9843578347999999999942998899999952599---9876999999988715999999999999843297668858
Q 003584 363 VKTGFEGYKFVNNALIDMYAKQGNLDCAFMVFNLMQD---KDVISWTSLITGCAYHGSYEEALKYFSDMRISGICPDHVV 439 (809)
Q Consensus 363 ~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t 439 (809)
.. +.+...+..+...+...|++++|...|+.+.+ .+..+|..+...+...|++++|+..|+++.... |+
T Consensus 130 --~~-p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~--p~--- 201 (388)
T 1w3b_A 130 --YN-PDLYCVRSDLGNLLKALGRLEEAKACYLKAIETQPNFAVAWSNLGCVFNAQGEIWLAIHHFEKAVTLD--PN--- 201 (388)
T ss_dssp --HC-TTCTHHHHHHHHHHHTTSCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHC--TT---
T ss_pred --HC-CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHCC--CC---
T ss_conf --59-89689999999999984689999999999987298978999999999998599999999999998559--88---
Q ss_pred HHHHHHHHHCCCCHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHCC---CCCEEECHHHHHHHHHC
Q ss_conf 999999973006504899999999991999880487499887994099999999997249---99900023999999964
Q 003584 440 VSSILSACAELTVLEFGQQVHAVFLKSGGCSSLSVDNSLVLVYAKCGCINDANRVFDSMH---TRDVITWTALIMGCAQN 516 (809)
Q Consensus 440 ~~~ll~a~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~---~~~~~~~~~li~~~~~~ 516 (809)
+...+..+...+...|++++|...|++.. ..+...|..+...|...
T Consensus 202 -------------------------------~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~ 250 (388)
T 1w3b_A 202 -------------------------------FLDAYINLGNVLKEARIFDRAVAAYLRALSLSPNHAVVHGNLACVYYEQ 250 (388)
T ss_dssp -------------------------------CHHHHHHHHHHHHTTTCTTHHHHHHHHHHHHCTTCHHHHHHHHHHHHHT
T ss_pred -------------------------------CHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHC
T ss_conf -------------------------------6799999999999857899999999999852968789999999999986
Q ss_pred CCHHHHHHHHHHHHHCCCCC-CHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHCCCHHHHHH
Q ss_conf 99499999999999889998-88789999999980397999999999967850999886999999999842199899999
Q 003584 517 GKGKEALQFYDQMLARGTKP-DYITFVGLLFACSHAGLAENARWYFESMDKVYGIKPGPDHYACMIDLLGRSGKLIEAKA 595 (809)
Q Consensus 517 g~~~~A~~~~~~m~~~g~~p-~~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~~~~~~~l~~~~~~~g~~~eA~~ 595 (809)
|++++|+..|+++... .| +..++..+..++...|++++|...++.+.+. .+.+...+..++.++.+.|++++|..
T Consensus 251 g~~~~A~~~~~~al~~--~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~--~p~~~~~~~~l~~~~~~~g~~~~A~~ 326 (388)
T 1w3b_A 251 GLIDLAIDTYRRAIEL--QPHFPDAYCNLANALKEKGSVAEAEDCYNTALRL--CPTHADSLNNLANIKREQGNIEEAVR 326 (388)
T ss_dssp TCHHHHHHHHHHHHHT--CSSCHHHHHHHHHHHHHHSCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHTTTCHHHHHH
T ss_pred CCHHHHHHHHHHHHHH--CCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHH--CCCCHHHHHHHHHHHHHCCCHHHHHH
T ss_conf 8899999999999864--9998899999999999869979999999999864--94449999999999998489999999
Q ss_pred HHHHCCC--CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHCCC
Q ss_conf 9986769--99987899999999961995499999988753699997107869615321599
Q 003584 596 LLDQMVG--EPDATVWKALLSACRVHGDLELGERAANNLFELEPMNAMPYVQLSNMYSTAGK 655 (809)
Q Consensus 596 ~~~~~~~--~p~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~ 655 (809)
.++++.. +.+...|..++..+...|++++|...+++++++.|+++..|..++.++...|+
T Consensus 327 ~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~p~~~~a~~~lg~~~~~~~~ 388 (388)
T 1w3b_A 327 LYRKALEVFPEFAAAHSNLASVLQQQGKLQEALMHYKEAIRISPTFADAYSNMGNTLKEMQD 388 (388)
T ss_dssp HHHHHTTSCTTCHHHHHHHHHHHHTTTCCHHHHHHHHHHHTTCTTCHHHHHHHHHHHHHTCC
T ss_pred HHHHHHHCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHCCC
T ss_conf 99999860987399997799999986888999999999986199978999859999987459
No 6
>1w3b_A UDP-N-acetylglucosamine--peptide N-acetylglucosaminyltransferase 110; OGT, glcnac, nucleoporin, O-linked glycosylation, TPR repeat, protein binding; 2.85A {Homo sapiens} SCOP: a.118.8.1
Probab=1.00 E-value=1 Score=197.72 Aligned_cols=351 Identities=17% Similarity=0.106 Sum_probs=255.1
Q ss_pred HHHHHCCCHHHHHHHHHHHHHCCCCCCC-CCHHHHHHHHHCCCCHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHCCCH
Q ss_conf 9999259916899999997988999996-417889998614799377999999999843578347999999999942998
Q 003584 309 VGFARQGFHKEALSLFKKMHARDIKIDD-FTYPSVLNCFASNIDLNNAKSVHSLIVKTGFEGYKFVNNALIDMYAKQGNL 387 (809)
Q Consensus 309 ~~~~~~g~~~~A~~~~~~m~~~~~~p~~-~t~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~ 387 (809)
..+.+.|++++|...+.++.+. .|+. ..+..+...+...++.+.+...+....+.. +.+...+..+...|.+.|++
T Consensus 7 ~~~~~~g~~~~A~~~~~~~~~~--~p~~~~~~~~l~~~~~~~~~~~~a~~~~~~a~~~~-p~~~~~~~~lg~~~~~~g~~ 83 (388)
T 1w3b_A 7 HREYQAGDFEAAERHCMQLWRQ--EPDNTGVLLLLSSIHFQCRRLDRSAHFSTLAIKQN-PLLAEAYSNLGNVYKERGQL 83 (388)
T ss_dssp HHHHHHTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCH
T ss_pred HHHHHCCCHHHHHHHHHHHHHH--CCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHCC-CCCHHHHHHHHHHHHHCCCH
T ss_conf 9998779999999999999984--97889999999999998689999999999997619-78669999999999877999
Q ss_pred HHHHHHHHHCCC--C-CHHHHHHHHHHHHHCCCHHHHHHHHHHHHHCCCCCCH-HHHHHHHHHHHCCCCHHHHHHHHHHH
Q ss_conf 899999952599--9-8769999999887159999999999998432976688-58999999973006504899999999
Q 003584 388 DCAFMVFNLMQD--K-DVISWTSLITGCAYHGSYEEALKYFSDMRISGICPDH-VVVSSILSACAELTVLEFGQQVHAVF 463 (809)
Q Consensus 388 ~~A~~~~~~~~~--~-~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~-~t~~~ll~a~~~~~~~~~a~~~~~~~ 463 (809)
++|...|+.+.+ | +...|..+...+...|++++|...|+++... .|+. ..+..+...+...|+.+.|...+..+
T Consensus 84 ~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~--~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~a 161 (388)
T 1w3b_A 84 QEAIEHYRHALRLKPDFIDGYINLAAALVAAGDMEGAVQAYVSALQY--NPDLYCVRSDLGNLLKALGRLEEAKACYLKA 161 (388)
T ss_dssp HHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHSCSSHHHHHHHHHHHH--CTTCTHHHHHHHHHHHTTSCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHCCCCHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHH--CCCCHHHHHHHHHHHHHCCCHHHHHHHHHHH
T ss_conf 99999999998749653999999999999858999999999999975--9896899999999999846899999999999
Q ss_pred HHHCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHCC--C-CCEEECHHHHHHHHHCCCHHHHHHHHHHHHHCCCCCC-HH
Q ss_conf 991999880487499887994099999999997249--9-9900023999999964994999999999998899988-87
Q 003584 464 LKSGGCSSLSVDNSLVLVYAKCGCINDANRVFDSMH--T-RDVITWTALIMGCAQNGKGKEALQFYDQMLARGTKPD-YI 539 (809)
Q Consensus 464 ~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~--~-~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~-~~ 539 (809)
.+.. +.+...+..+...|.+.|++++|...|+++. . .+...|..+...+...|++++|+..|++.... .|+ ..
T Consensus 162 l~~~-p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~--~p~~~~ 238 (388)
T 1w3b_A 162 IETQ-PNFAVAWSNLGCVFNAQGEIWLAIHHFEKAVTLDPNFLDAYINLGNVLKEARIFDRAVAAYLRALSL--SPNHAV 238 (388)
T ss_dssp HHHC-TTCHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHTTTCTTHHHHHHHHHHHH--CTTCHH
T ss_pred HHHC-CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHH--CCCCHH
T ss_conf 8729-8978999999999998599999999999998559886799999999999857899999999999852--968789
Q ss_pred HHHHHHHHHHCCCCHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHCCC--CCCHHHHHHHHHHHH
Q ss_conf 899999999803979999999999678509998869999999998421998999999986769--999878999999999
Q 003584 540 TFVGLLFACSHAGLAENARWYFESMDKVYGIKPGPDHYACMIDLLGRSGKLIEAKALLDQMVG--EPDATVWKALLSACR 617 (809)
Q Consensus 540 t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~~~~~~~l~~~~~~~g~~~eA~~~~~~~~~--~p~~~~~~~ll~~~~ 617 (809)
++..+..++...|++++|...|+.+... .+.+...+..++..+.+.|++++|.+.++++.. +.+..+|..++..+.
T Consensus 239 ~~~~l~~~~~~~g~~~~A~~~~~~al~~--~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~ 316 (388)
T 1w3b_A 239 VHGNLACVYYEQGLIDLAIDTYRRAIEL--QPHFPDAYCNLANALKEKGSVAEAEDCYNTALRLCPTHADSLNNLANIKR 316 (388)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHT--CSSCHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHHH--CCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHH
T ss_conf 9999999999868899999999999864--99988999999999998699799999999998649444999999999999
Q ss_pred HCCCHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHCCCHHHHHHHHHHHHHC
Q ss_conf 6199549999998875369999710786961532159926999999999858
Q 003584 618 VHGDLELGERAANNLFELEPMNAMPYVQLSNMYSTAGKWEDAARVRKLMKSR 669 (809)
Q Consensus 618 ~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~ 669 (809)
..|+++.|...+++++++.|+++..+..++.+|...|++++|...++++.+.
T Consensus 317 ~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~ 368 (388)
T 1w3b_A 317 EQGNIEEAVRLYRKALEVFPEFAAAHSNLASVLQQQGKLQEALMHYKEAIRI 368 (388)
T ss_dssp TTTCHHHHHHHHHHHTTSCTTCHHHHHHHHHHHHTTTCCHHHHHHHHHHHTT
T ss_pred HCCCHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHH
T ss_conf 8489999999999998609873999977999999868889999999999861
No 7
>2gw1_A Mitochondrial precursor proteins import receptor; TPR, protein transport; 3.00A {Saccharomyces cerevisiae}
Probab=1.00 E-value=1 Score=190.51 Aligned_cols=223 Identities=8% Similarity=-0.037 Sum_probs=148.1
Q ss_pred HHHHHHCCCCHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHCC---CCCEEECHHHHHHHHHCCCH
Q ss_conf 999973006504899999999991999880487499887994099999999997249---99900023999999964994
Q 003584 443 ILSACAELTVLEFGQQVHAVFLKSGGCSSLSVDNSLVLVYAKCGCINDANRVFDSMH---TRDVITWTALIMGCAQNGKG 519 (809)
Q Consensus 443 ll~a~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~---~~~~~~~~~li~~~~~~g~~ 519 (809)
+...+...|+++.+...+..+.+.... ...+..+...|...|++++|...++++. ..+...|..+...+...|++
T Consensus 243 ~~~~~~~~~~~~~A~~~~~~~l~~~~~--~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~ 320 (514)
T 2gw1_A 243 TGIFKFLKNDPLGAHEDIKKAIELFPR--VNSYIYMALIMADRNDSTEYYNYFDKALKLDSNNSSVYYHRGQMNFILQNY 320 (514)
T ss_dssp HHHHHHHSSCHHHHHHHHHHHHHHCCC--HHHHHHHHHHHHTSSCCTTGGGHHHHHHTTCTTCTHHHHHHHHHHHHTTCT
T ss_pred HHHHHHHCCCHHHHHHHHHHHHHHCCC--HHHHHHHHHHHHHCCCHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHCCH
T ss_conf 999999878999999999999863864--899999999999888899999999998613867789999999999980779
Q ss_pred HHHHHHHHHHHHCCCCCCHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHH
Q ss_conf 99999999999889998887899999999803979999999999678509998869999999998421998999999986
Q 003584 520 KEALQFYDQMLARGTKPDYITFVGLLFACSHAGLAENARWYFESMDKVYGIKPGPDHYACMIDLLGRSGKLIEAKALLDQ 599 (809)
Q Consensus 520 ~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~~~~~~~l~~~~~~~g~~~eA~~~~~~ 599 (809)
++|...|+++.... +.+...+..+...+...|++++|...++.+.+. .+.+...+..++..+.+.|++++|...+++
T Consensus 321 ~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~--~~~~~~~~~~la~~~~~~~~~~~A~~~~~~ 397 (514)
T 2gw1_A 321 DQAGKDFDKAKELD-PENIFPYIQLACLAYRENKFDDCETLFSEAKRK--FPEAPEVPNFFAEILTDKNDFDKALKQYDL 397 (514)
T ss_dssp THHHHHHHHHHHTC-SSCSHHHHHHHHHTTTTTCHHHHHHHHHHHHHH--STTCSHHHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHC-HHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHH--CCCCHHHHHHHHHHHHHCCCHHHHHHHHHH
T ss_conf 99999999998738-502899999999999868999999999999987--546778999999999878899999999999
Q ss_pred CCC----CCC----HHHHHHHHHHHHH---CCCHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHCCCHHHHHHHHHHHHH
Q ss_conf 769----999----8789999999996---19954999999887536999971078696153215992699999999985
Q 003584 600 MVG----EPD----ATVWKALLSACRV---HGDLELGERAANNLFELEPMNAMPYVQLSNMYSTAGKWEDAARVRKLMKS 668 (809)
Q Consensus 600 ~~~----~p~----~~~~~~ll~~~~~---~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~ 668 (809)
+.. .++ ...|..++..+.. .|+++.|...++++++..|+++..+..++.+|...|++++|...+++..+
T Consensus 398 a~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~ 477 (514)
T 2gw1_A 398 AIELENKLDGIYVGIAPLVGKATLLTRNPTVENFIEATNLLEKASKLDPRSEQAKIGLAQMKLQQEDIDEAITLFEESAD 477 (514)
T ss_dssp HHHHHHTSSSCSSCSHHHHHHHHHHHTSCCTTHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHCCCHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHCCHHHHHHHHHHHHH
T ss_conf 99761233217899999999999986633258889999999999875855589999999999982579999999999987
Q ss_pred CC
Q ss_conf 89
Q 003584 669 RG 670 (809)
Q Consensus 669 ~g 670 (809)
..
T Consensus 478 ~~ 479 (514)
T 2gw1_A 478 LA 479 (514)
T ss_dssp HC
T ss_pred HC
T ss_conf 66
No 8
>2gw1_A Mitochondrial precursor proteins import receptor; TPR, protein transport; 3.00A {Saccharomyces cerevisiae}
Probab=1.00 E-value=1 Score=185.36 Aligned_cols=241 Identities=11% Similarity=-0.055 Sum_probs=172.1
Q ss_pred HHHHHHHHHHHHCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHCCCCCHHHHHHHHHHH
Q ss_conf 69999999887159999999999998432976688589999999730065048999999999919998804874998879
Q 003584 403 ISWTSLITGCAYHGSYEEALKYFSDMRISGICPDHVVVSSILSACAELTVLEFGQQVHAVFLKSGGCSSLSVDNSLVLVY 482 (809)
Q Consensus 403 ~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~ 482 (809)
..|..+...+...|++++|...|+++.... |+...+..+...+...|+++.+...+..+.+.. +.+...+..+...|
T Consensus 238 ~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~--~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~ 314 (514)
T 2gw1_A 238 ISLEHTGIFKFLKNDPLGAHEDIKKAIELF--PRVNSYIYMALIMADRNDSTEYYNYFDKALKLD-SNNSSVYYHRGQMN 314 (514)
T ss_dssp HHHHHHHHHHHHSSCHHHHHHHHHHHHHHC--CCHHHHHHHHHHHHTSSCCTTGGGHHHHHHTTC-TTCTHHHHHHHHHH
T ss_pred HHHHHHHHHHHHCCCHHHHHHHHHHHHHHC--CCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHCC-CCCHHHHHHHHHHH
T ss_conf 999999999998789999999999998638--648999999999998888999999999986138-67789999999999
Q ss_pred HHCCCHHHHHHHHHHCC---CCCEEECHHHHHHHHHCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHCCCCHHHHHH
Q ss_conf 94099999999997249---999000239999999649949999999999988999888789999999980397999999
Q 003584 483 AKCGCINDANRVFDSMH---TRDVITWTALIMGCAQNGKGKEALQFYDQMLARGTKPDYITFVGLLFACSHAGLAENARW 559 (809)
Q Consensus 483 ~~~g~~~~A~~~~~~~~---~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~ 559 (809)
...|++++|...|++.. ..+...|..+...+...|++++|+..++++.... +.+...+..+...+...|++++|..
T Consensus 315 ~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~la~~~~~~~~~~~A~~ 393 (514)
T 2gw1_A 315 FILQNYDQAGKDFDKAKELDPENIFPYIQLACLAYRENKFDDCETLFSEAKRKF-PEAPEVPNFFAEILTDKNDFDKALK 393 (514)
T ss_dssp HHTTCTTHHHHHHHHHHHTCSSCSHHHHHHHHHTTTTTCHHHHHHHHHHHHHHS-TTCSHHHHHHHHHHHHTTCHHHHHH
T ss_pred HHHCCHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHHCCCHHHHHH
T ss_conf 980779999999999987385028999999999998689999999999999875-4677899999999987889999999
Q ss_pred HHHHHHHHHCCCCC----HHHHHHHHHHHHH---CCCHHHHHHHHHHCCC--CCCHHHHHHHHHHHHHCCCHHHHHHHHH
Q ss_conf 99996785099988----6999999999842---1998999999986769--9998789999999996199549999998
Q 003584 560 YFESMDKVYGIKPG----PDHYACMIDLLGR---SGKLIEAKALLDQMVG--EPDATVWKALLSACRVHGDLELGERAAN 630 (809)
Q Consensus 560 ~~~~m~~~~~~~p~----~~~~~~l~~~~~~---~g~~~eA~~~~~~~~~--~p~~~~~~~ll~~~~~~g~~~~A~~~~~ 630 (809)
.++.+.....-.+. ...+..++..+.. .|++++|...++++.. +.+...|..++..+...|+.+.|...++
T Consensus 394 ~~~~a~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~ 473 (514)
T 2gw1_A 394 QYDLAIELENKLDGIYVGIAPLVGKATLLTRNPTVENFIEATNLLEKASKLDPRSEQAKIGLAQMKLQQEDIDEAITLFE 473 (514)
T ss_dssp HHHHHHHHHHTSSSCSSCSHHHHHHHHHHHTSCCTTHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHH
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHCCHHHHHHHHH
T ss_conf 99999976123321789999999999998663325888999999999987585558999999999998257999999999
Q ss_pred HHHCCCCCCCCCHHHHH
Q ss_conf 87536999971078696
Q 003584 631 NLFELEPMNAMPYVQLS 647 (809)
Q Consensus 631 ~~~~~~p~~~~~~~~l~ 647 (809)
+++++.|.++..+..+.
T Consensus 474 ~a~~~~~~~~~~~~~~~ 490 (514)
T 2gw1_A 474 ESADLARTMEEKLQAIT 490 (514)
T ss_dssp HHHHHCSSHHHHHHHHH
T ss_pred HHHHHCCCCHHHHHHHH
T ss_conf 99876614688999999
No 9
>2y4t_A DNAJ homolog subfamily C member 3; chaperone, endoplasmic reticulum, protein folding, tetratricopeptiderepeat, J domain, unfolded protein respons; 3.00A {Homo sapiens} PDB: 2y4u_A
Probab=1.00 E-value=1 Score=180.41 Aligned_cols=171 Identities=13% Similarity=0.054 Sum_probs=120.2
Q ss_pred HHHHHHHHHHHHCCCHHHHHHHHHHCC---CCCEEECHHHHHHHHHCCCHHHHHHHHHHHHHCCCCCCHH-HHHHH----
Q ss_conf 487499887994099999999997249---9990002399999996499499999999999889998887-89999----
Q 003584 473 SVDNSLVLVYAKCGCINDANRVFDSMH---TRDVITWTALIMGCAQNGKGKEALQFYDQMLARGTKPDYI-TFVGL---- 544 (809)
Q Consensus 473 ~~~~~li~~~~~~g~~~~A~~~~~~~~---~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~-t~~~l---- 544 (809)
.++..+..+|.+.|++++|...|+++. ..+...|..+...|...|++++|+..|+++... .|+.. .+..+
T Consensus 178 ~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~--~p~~~~~~~~~~~~~ 255 (450)
T 2y4t_A 178 ELRELRAECFIKEGEPRKAISDLKAASKLKNDNTEAFYKISTLYYQLGDHELSLSEVRECLKL--DQDHKRCFAHYKQVK 255 (450)
T ss_dssp HHHHHHHHHHHHTTCGGGGHHHHHHHHHHHCSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHCCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHH--CCCHHHHHHHHHHHH
T ss_conf 999999999987799999999999999868898799999999999759999999999999875--998089999999999
Q ss_pred --------HHHHHCCCCHHHHHHHHHHHHHHHCCCCC-----HHHHHHHHHHHHHCCCHHHHHHHHHHCCC--CCCHHHH
Q ss_conf --------99998039799999999996785099988-----69999999998421998999999986769--9998789
Q 003584 545 --------LFACSHAGLAENARWYFESMDKVYGIKPG-----PDHYACMIDLLGRSGKLIEAKALLDQMVG--EPDATVW 609 (809)
Q Consensus 545 --------l~a~~~~g~~~~a~~~~~~m~~~~~~~p~-----~~~~~~l~~~~~~~g~~~eA~~~~~~~~~--~p~~~~~ 609 (809)
...+...|++++|...|+.+... .|+ ..++..++.++.+.|++++|...++++.. +.+...|
T Consensus 256 ~~~~~~~~~~~~~~~g~~~~A~~~~~~~l~~---~p~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~p~~~~~~ 332 (450)
T 2y4t_A 256 KLNKLIESAEELIRDGRYTDATSKYESVMKT---EPSIAEYTVRSKERICHCFSKDEKPVEAIRVCSEVLQMEPDNVNAL 332 (450)
T ss_dssp HHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH---CCSSHHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHCTTCHHHH
T ss_pred HHHHHHHHHHHHHHCCCHHHHHHHHHHHHHC---CCCCHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCCCCHHHH
T ss_conf 9999999999998717999999999999850---8733689999999999999987889999999999988484548999
Q ss_pred HHHHHHHHHCCCHHHHHHHHHHHHCCCCCCCCCHHHHHH
Q ss_conf 999999996199549999998875369999710786961
Q 003584 610 KALLSACRVHGDLELGERAANNLFELEPMNAMPYVQLSN 648 (809)
Q Consensus 610 ~~ll~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~ 648 (809)
..++.+|...|+++.|...++++++++|+++..+..++.
T Consensus 333 ~~l~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~ 371 (450)
T 2y4t_A 333 KDRAEAYLIEEMYDEAIQDYETAQEHNENDQQIREGLEK 371 (450)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHTTSSSCHHHHHHHHH
T ss_pred HHHHHHHHHHCCHHHHHHHHHHHHHHCCCHHHHHHHHHH
T ss_conf 999999987037999999999998859352999999999
No 10
>3fp2_A TPR repeat-containing protein YHR117W; TOM71, mitochondria translocation, allosteric REG phosphoprotein, TPR repeat, ATP-binding; 1.98A {Saccharomyces cerevisiae} PDB: 3fp3_A 3fp4_A 3lca_A
Probab=1.00 E-value=1 Score=179.38 Aligned_cols=228 Identities=9% Similarity=-0.022 Sum_probs=110.5
Q ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHH
Q ss_conf 99999988715999999999999843297668858999999973006504899999999991999880487499887994
Q 003584 405 WTSLITGCAYHGSYEEALKYFSDMRISGICPDHVVVSSILSACAELTVLEFGQQVHAVFLKSGGCSSLSVDNSLVLVYAK 484 (809)
Q Consensus 405 ~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~ 484 (809)
+..+...+...|++++|...|+++... .|+...+..+...+...|+++.+...+..+.+.. +.+..++..+...|..
T Consensus 246 ~~~~g~~~~~~~~~~~A~~~~~~~~~~--~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~ 322 (537)
T 3fp2_A 246 LCYTGIFHFLKNNLLDAQVLLQESINL--HPTPNSYIFLALTLADKENSQEFFKFFQKAVDLN-PEYPPTYYHRGQMYFI 322 (537)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHH--CCCHHHHHHHHHHTCCSSCCHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHHC--CCCCHHHHHHHHHHHHHCCHHHHHHHHHHHHCCC-CCCHHHHHHHHHHHHH
T ss_conf 999999987545578999999999866--9874699999999998037999999999975459-9987999999999986
Q ss_pred CCCHHHHHHHHHHCCCCCEEECHHHHHHHHHCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHCCCCHHHHHHHHHHH
Q ss_conf 09999999999724999900023999999964994999999999998899988878999999998039799999999996
Q 003584 485 CGCINDANRVFDSMHTRDVITWTALIMGCAQNGKGKEALQFYDQMLARGTKPDYITFVGLLFACSHAGLAENARWYFESM 564 (809)
Q Consensus 485 ~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~m 564 (809)
.|++++|...|+ ++.... +.+...+..+...+...|++++|...++.+
T Consensus 323 ~~~~~~A~~~~~-------------------------------~a~~~~-~~~~~~~~~la~~~~~~g~~~~A~~~~~~~ 370 (537)
T 3fp2_A 323 LQDYKNAKEDFQ-------------------------------KAQSLN-PENVYPYIQLACLLYKQGKFTESEAFFNET 370 (537)
T ss_dssp TTCHHHHHHHHH-------------------------------HHHHHC-TTCSHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred CCCHHHHHHHHH-------------------------------HHHHHC-CCCHHHHHHHHHHHHHCCCHHHHHHHHHHH
T ss_conf 689999999999-------------------------------999859-997799999999999847799999999999
Q ss_pred HHHHCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHCCC----C----CCHHHHHHHHHHHHHC----------CCHHHHH
Q ss_conf 78509998869999999998421998999999986769----9----9987899999999961----------9954999
Q 003584 565 DKVYGIKPGPDHYACMIDLLGRSGKLIEAKALLDQMVG----E----PDATVWKALLSACRVH----------GDLELGE 626 (809)
Q Consensus 565 ~~~~~~~p~~~~~~~l~~~~~~~g~~~eA~~~~~~~~~----~----p~~~~~~~ll~~~~~~----------g~~~~A~ 626 (809)
... .+.+...+..++..+...|++++|...++++.. . .....+..+...+... |+++.|.
T Consensus 371 ~~~--~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~A~ 448 (537)
T 3fp2_A 371 KLK--FPTLPEVPTFFAEILTDRGDFDTAIKQYDIAKRLEEVQEKIHVGIGPLIGKATILARQSSQDPTQLDEEKFNAAI 448 (537)
T ss_dssp HHH--CTTCTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHCSSCSSTTHHHHHHHHHHHHHHTC----CCHHHHHHHH
T ss_pred HHH--CCCCHHHHHHHHHHHHHHCCHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHH
T ss_conf 873--999859999999999883788999999999987097624468889999988999999764010022475799999
Q ss_pred HHHHHHHCCCCCCCCCHHHHHHHHHHCCCHHHHHHHHHHHHHC
Q ss_conf 9998875369999710786961532159926999999999858
Q 003584 627 RAANNLFELEPMNAMPYVQLSNMYSTAGKWEDAARVRKLMKSR 669 (809)
Q Consensus 627 ~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~ 669 (809)
..++++++..|+++..+..++.+|...|++++|...+++..+.
T Consensus 449 ~~~~~a~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~ 491 (537)
T 3fp2_A 449 KLLTKACELDPRSEQAKIGLAQLKLQMEKIDEAIELFEDSAIL 491 (537)
T ss_dssp HHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHCCCCHHHHHHHHHHHHHHCCHHHHHHHHHHHHHH
T ss_conf 9999999749997899999999999851499999999999986
Done!